# hmmscan :: search sequence(s) against a profile database
# HMMER 3.2.1 (June 2018); http://hmmer.org/
# Copyright (C) 2018 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Micromonospora_carbonacea_JXNU-1-ASM87622v1/GCA_000876225.1_ASM87622v1_protein.faa
# target HMM database:             /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# output directed to file:         /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Micromonospora_carbonacea_JXNU-1-ASM87622v1/GCA_000876225.1_ASM87622v1_protein.PFam32-A
# per-seq hits tabular output:     /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Micromonospora_carbonacea_JXNU-1-ASM87622v1/GCA_000876225.1_ASM87622v1_protein.PFam32-A.tblout
# number of worker threads:        20
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       KIR60544.1  [L=226]
Description: hypothetical protein TK50_21680 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.019   15.2   0.1      0.027   14.8   0.1    1.2  1  RskA      Anti-sigma-K factor rskA


Domain annotation for each model (and alignments):
>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   1.5e-06     0.027      25      99 ..      30     124 ..      16     145 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-06
                 ...................XXXXXXXXXXXXXX........................XXXXXXXX.XXXXXXXXXXX.....XXXX.XXXXXXXXX CS
        RskA  25 aaaaapppaaapaararr.laaaaAaalllvlg..............qlavasaaldplrqsaaq.aeavvavlaap.....daagatatvvdsas 99 
                 + +a  p  +ap+ r+rr ++a++ aa l+++g              ++ ++ ++++ lr+++++ a+++++ l+++     d + + +tv+ ++ 
  KIR60544.1  30 QDPADGP-GRAPRSRRRRiVLAVVLAAGLAGVGalgiagwrvaqqkdTELSSPDTVAGLRRDDSErARSTAEYLRDGlsadiDLDRSFGTVYRDPA 124
                 3344333.3333334444444444444445555344666666666665555555555555555541333333344445555655556666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.32s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 1415.28
//
Query:       KIR60545.1  [L=872]
Description: valyl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-191  638.0   0.0   7.8e-189  628.8   0.0    2.9  1  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)
    4.7e-41  140.3   0.0    7.5e-41  139.6   0.0    1.3  1  Anticodon_1      Anticodon-binding domain of tRNA
    1.8e-20   73.1   0.0    7.5e-06   24.9   0.0    4.0  4  tRNA-synt_1g     tRNA synthetases class I (M)
    5.5e-15   55.4   3.3    1.2e-14   54.3   3.3    1.6  1  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
    5.1e-07   29.4   0.1    8.9e-06   25.3   0.0    2.2  2  tRNA-synt_1_2    Leucyl-tRNA synthetase, Domain 2
     0.0075   15.6   0.0        1.1    8.6   0.0    2.2  2  tRNA-synt_1e     tRNA synthetases class I (C) catalytic domai
     0.0097   14.9   0.0      0.017   14.0   0.0    1.3  1  tRNA-synt_1f     tRNA synthetases class I (K)


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  628.8   0.0    3e-192  7.8e-189       2     600 ..      28     565 ..      27     567 .. 0.95

  Alignments for each domain:
  == domain 1  score: 628.8 bits;  conditional E-value: 3e-192
  tRNA-synt_1   2 lyekWeeedvfkkelekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgree 99 
                  +ye+W + + f+++  ++ +k++f++v++PP+vtGslH+Gha+++tl+d ++r krm+G+e+l++pG+DhaG+a++  ve++l+ ++  +r++lgre+
   KIR60545.1  28 RYEQWVAGGRFRAS--AQSDKPPFTVVIPPPNVTGSLHMGHAFEHTLMDALTRRKRMQGYEALWLPGMDHAGIATQNLVERQLAGEG-LSRHDLGREK 122
                  79***********9..8889***************************************************************6655.7********* PP

  tRNA-synt_1 100 frekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkkdalihvafpladk 197
                  f+e+v++wkae+   i  q++rlG  vD+dre++T+d +l+ av+ +f++l+d+gliyr+++++nw++++ tals++Eve+ d ++ l+++++ +   
   KIR60545.1 123 FVERVWQWKAESGGAILGQMRRLGDAVDWDRERFTMDAGLSRAVQTMFKKLFDDGLIYRANRIINWCPRCLTALSDIEVEHTDDDGELVSIRYSA--- 217
                  *********************************************************************************************74... PP

  tRNA-synt_1 198 eevklviaTTtPeTllgdtavavnpeldyvitkeklilaeallkslvkkesekkiledergkeLegkevelplvnrkipiiaddyvdkeaGtGvVkia 295
                      +v+aTT+ eT+lgdtavav+p+                               der+++L+g eve pl++r+ipi+ad++vd  +GtG+Vk++
   KIR60545.1 218 ---DVVVATTRAETMLGDTAVAVHPD-------------------------------DERYQHLIGTEVEVPLTGRRIPIVADEHVDPAFGTGMVKVT 281
                  ...58*********************...............................9**************************************** PP

  tRNA-synt_1 296 PahdedDyevgkkynlevinildedgtlteeaaefeglkvfdarkkvveelkekglll.kaekiehsvpfcerskkpiiyrateqWfvrvkeladaal 392
                  Pahd++D+e+g++++l+ + i+de g++t + + f+gl++ +ar ++v++l+e+gl++ ++ +  h v++c+r k+ +++r++ qWfv+  +la+aa 
   KIR60545.1 282 PAHDPNDFEIGQRHGLPALAIMDERGVITAH-GPFQGLDRYEARPAIVAALREQGLIVaEKRPYVHAVGHCSRCKTTVEPRLSLQWFVNTGPLAKAAG 378
                  ****************************976.68*********************987256689********************************** PP

  tRNA-synt_1 393 kave..kvqfvpkskekryaswleniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeeeaekkalekeakdklkkekgelekdedvlD 488
                  +av+  +v++ p    kry+ w+ n++dWciSRq+wWGhrip+++  + +e+v+       v   ee  + +                 +++dedvlD
   KIR60545.1 379 DAVRdgRVKIEPAELAKRYFAWVDNMHDWCISRQLWWGHRIPVWYGPD-GEIVC-------VGPDEEPPTGAG----------------WHQDEDVLD 452
                  ****999****************************************9.55888.......332233333333................479****** PP

  tRNA-synt_1 489 vWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillsl.altgsePfkevlvhglvrdeeGrKmSKslgNvidpldvikkygada 585
                  +WFsSg+wpfstlg+pe+ t++l+kf+p+++l++G+Di+++Wvar+++++l a+ g++Pf  v +hg+vrde+G+KmSKs gNv+dpld i++ gada
   KIR60545.1 453 TWFSSGLWPFSTLGWPEQ-TPDLAKFYPTSVLVTGYDILFFWVARMMMFGLyAMDGRQPFDVVALHGMVRDEHGKKMSKSFGNVVDPLDWIDRFGADA 549
                  ******************.*******************************858999****************************************** PP

  tRNA-synt_1 586 lRltli.lsdvgrdin 600
                   R+tl+  ++ g+d+ 
   KIR60545.1 550 TRFTLArGANPGQDVP 565
                  ******9999999986 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.6   0.0   2.9e-44   7.5e-41       1     147 [.     609     750 ..     609     755 .. 0.92

  Alignments for each domain:
  == domain 1  score: 139.6 bits;  conditional E-value: 2.9e-44
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkraaqevllevletllrllaPfmPfitEelwqreeeelgk 98 
                  drwils+l+++ +ev+e +e y+f+k+++ ly+f w+d+cdwy+el+kp l+   +  ++a+++vl +vl++llrll+P++Pf+t+elw      l +
   KIR60545.1 609 DRWILSRLAHVTAEVDEQFEAYEFAKVCDLLYHFAWDDVCDWYVELSKPVLAEGGP-GADATRRVLGHVLDQLLRLLHPVIPFVTDELW----IALTG 701
                  9**************************************************76554.335799**************************....999** PP

  Anticodon_1  99 kesimlaewpe.kaeelekeleeeevellkeivkairklrselkikpsse 147
                   e++m a+wp+ + +  ++++ e ev  ++++v+ ir++rs++++ p ++
   KIR60545.1 702 GETVMTAAWPAaDRTGIDDAA-EGEVGTVQRVVTEIRRFRSDQGLRPTQR 750
                  **********86665557777.89********************999886 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.1e-08   5.5e-05       6      54 ..      54     102 ..      49     131 .. 0.89
   2 !    6.6   0.0    0.0011       2.8      95     137 ..     161     203 ..     141     206 .. 0.88
   3 !   14.2   0.0   5.5e-06     0.014     168     239 ..     350     424 ..     342     435 .. 0.87
   4 !   24.9   0.0   2.9e-09   7.5e-06     306     371 ..     504     571 ..     474     585 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.1e-08
                   --B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHH CS
  tRNA-synt_1g   6 alpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpiel 54 
                   + p ++g+lH+Gh+ e+   D+++R kr++g+e l++ g+D+ G++++ 
    KIR60545.1  54 PPPNVTGSLHMGHAFEHTLMDALTRRKRMQGYEALWLPGMDHAGIATQN 102
                   557789**************************************99875 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0011
                   HHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-EE CS
  tRNA-synt_1g  95 ehkelvqeifkklkekgliyekeieqlycpkderflpdryveg 137
                     +++vq +fkkl + gliy+ +    +cp++ + l+d +ve 
    KIR60545.1 161 GLSRAVQTMFKKLFDDGLIYRANRIINWCPRCLTALSDIEVEH 203
                   55789*********************************99875 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 5.5e-06
                   .........EEE.EEEEEE-GGGGHHHHHHHH.HH-TT.SHHHHHHHH.HHHHT----EE-ESS-SSS-EET...T CS
  tRNA-synt_1g 168 ksaisgskpevketehlffklskfekklkewieeeeke.leenvkkivkewlkegLkdlaisrdldwGipvP...g 239
                   +++ ++++ e + + ++f +   ++k+  + ++  + + ++ +  k   +w+++ ++d++isr+l wG ++P   g
    KIR60545.1 350 HCSRCKTTVEPRLSLQWFVNTGPLAKAAGDAVRDGRVKiEPAELAKRYFAWVDN-MHDWCISRQLWWGHRIPvwyG 424
                   799999**************************88887788888888888***99.***************996654 PP

  == domain 4  score: 24.9 bits;  conditional E-value: 2.9e-09
                   HTT----.S-EEEE--EEE.--------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE-HHHH CS
  tRNA-synt_1g 306 gaelklp.kkvvaheyltv.egkKlSkSrgvvvkakealerldadllRYylaaeapekkDldfswedf 371
                   + + ++p + v+ h+++   +gkK+SkS g+vv++ ++++r+ ad+ R+ la+ a+  +D+  s++  
    KIR60545.1 504 AMDGRQPfDVVALHGMVRDeHGKKMSKSFGNVVDPLDWIDRFGADATRFTLARGANPGQDVPVSEDWC 571
                   34444551445568888651599******************************999999998877655 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   3.3   4.6e-18   1.2e-14       1      65 [.     806     870 ..     806     871 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 4.6e-18
  Val_tRNA-synt_C   1 DvekeraRLeKeLaklekeiervqkKLanpgFveKAPaeVVeeekaklaeleeqaeklkerLskL 65 
                      Dv++eraRL+K+ a +eke+++++ KL np Fv KAP+ VV + +++la++e+   ++ ++L+ L
       KIR60545.1 806 DVAAERARLTKDRAAAEKEVAQARAKLDNPAFVGKAPEPVVAKIRERLATAEADLVRIDAALEAL 870
                      9*****************************************************99999999876 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.047   1.2e+02      21      50 ..     217     246 ..     199     254 .. 0.83
   2 !   25.3   0.0   3.5e-09   8.9e-06      86     142 ..     249     305 ..     242     316 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.047
  tRNA-synt_1_2  21 eklevfttrpdtlfGvtfvalapehplvek 50 
                    +++ v ttr +t+ G t va+ p+ +  ++
     KIR60545.1 217 ADVVVATTRAETMLGDTAVAVHPDDERYQH 246
                    478899***************999876665 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 3.5e-09
  tRNA-synt_1_2  86 glkaihPitgekipiwvanyvlmeygtgavmavPahdqrDfeFakkynlpikqvikp 142
                    g+++  P+tg++ipi   ++v   +gtg v   Pahd +Dfe  ++++lp   ++ +
     KIR60545.1 249 GTEVEVPLTGRRIPIVADEHVDPAFGTGMVKVTPAHDPNDFEIGQRHGLPALAIMDE 305
                    778899********************************************9888765 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0066        17      17      49 ..      56      88 ..      43      93 .. 0.88
   2 !    8.6   0.0   0.00041       1.1     245     281 ..     518     555 ..     496     560 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0066
                  EBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEE CS
  tRNA-synt_1e 17 ptvydashlGhaRslvafDilrrilqalgYdvq 49
                  p v    h+Gha +   +D l r  +++gY+  
    KIR60545.1 56 PNVTGSLHMGHAFEHTLMDALTRRKRMQGYEAL 88
                  6788999***********************965 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00041
                   --EE.ETTBE--TTTT---BHHHHHTTS-HHHHHHHHH CS
  tRNA-synt_1e 245 ghlk.iegekmsksLknfitikdvlkkfdprqlRllll 281
                   g+++  +g+kmsks +n++   d + +f + + R+ l+
    KIR60545.1 518 GMVRdEHGKKMSKSFGNVVDPLDWIDRFGADATRFTLA 555
                   555514589*************************9987 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   6.7e-06     0.017     270     315 ..     516     562 ..     503     571 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.7e-06
  tRNA-synt_1f 270 vYelillkggekmssSkGnvltledwlevaepevlrflilrr.kPkk 315
                      ++ +++g+kms+S Gnv+ + dw++    +  rf ++r  +P +
    KIR60545.1 516 LHGMVRDEHGKKMSKSFGNVVDPLDWIDRFGADATRFTLARGaNPGQ 562
                   467999*******************************9998425555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (872 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 5289.54
//
Query:       KIR60546.1  [L=138]
Description: hypothetical protein TK50_21695 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-21   74.9  17.2    6.2e-21   74.7  17.2    1.0  1  DUF4233   Protein of unknown function (DUF4233)


Domain annotation for each model (and alignments):
>> DUF4233  Protein of unknown function (DUF4233)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7  17.2   3.5e-25   6.2e-21       1      98 [.      38     135 ..      38     138 .] 0.89

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 3.5e-25
     DUF4233   1 RgvmagtLvlEaivvlLallv....aiglrdtepatvlsvggvlavallllagllrrpwglalglvlQvlliaagfvvpamfvvgvvFaavWvyalvlg 95 
                 Rg+ agtL lEa+v+lLa+      +         ++++v+++lava+++lag++rrpw++++g+vlQ +l++ag++  +++++g++Fa+vW yal+++
  KIR60546.1  38 RGLGAGTLGLEALVLLLAIQPirvvG----GELSGAAVAVIVLLAVAAVALAGMMRRPWAWHAGTVLQGALMLAGLLHWSLLALGIIFALVWGYALHVR 132
                 89*****************9965432....233355888999******************************9997666******************** PP

     DUF4233  96 rri 98 
                 r i
  KIR60546.1 133 RVI 135
                 988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 933.00
//
Query:       KIR60547.1  [L=460]
Description: glyoxalase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-12   45.5   0.0    1.7e-11   44.4   0.0    1.6  2  Glyoxalase       Glyoxalase/Bleomycin resistance protein/Diox
    6.9e-09   36.5   0.6    3.1e-08   34.4   0.1    2.3  2  Glyoxalase_6     Glyoxalase-like domain
     0.0091   16.3   0.0       0.32   11.3   0.0    2.4  1  Glyoxalase_4     Glyoxalase/Bleomycin resistance protein/Diox
  ------ inclusion threshold ------
      0.084   12.8   0.0        0.2   11.6   0.0    1.5  1  Glyoxalase_2     Glyoxalase-like domain
       0.71    9.9   9.5        1.4    9.0   9.5    1.4  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       4.5   1.6e+04      40      64 ..     119     143 ..     115     146 .. 0.73
   2 !   44.4   0.0   4.6e-15   1.7e-11       5     126 ..     343     449 ..     341     451 .. 0.81

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 4.5
                 EEEEEEETTTSEEEEEEEECCTTSC CS
  Glyoxalase  40 lriaffhaggghielvlneapsgaa 64 
                 l i++  ++++h+ +++  +p +a+
  KIR60547.1 119 LPIRVALDDQRHVRVLWDDVPTHAE 143
                 5667777888888888888888776 PP

  == domain 2  score: 44.4 bits;  conditional E-value: 4.6e-15
                 EEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGEEEE CS
  Glyoxalase   5 vallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvkvva 103
                 ++llv+dl +sl+FY++ LGf+ v++          + a++   +g   lvl+e+++ a+ +          + ++ l+v+d+  a++r+++ gv+++ 
  KIR60547.1 343 ITLLVTDLGRSLEFYRDTLGFTEVDRGS--------GNAVL--ASGATRLVLREVAGAAPMSR--------RLVHVNLEVDDIQGAYERMRDSGVRFTY 423
                 789*************************........55555..55566677777777777777........68999**********************8 PP

                 EE...ECHHCTEEEEEEEEETTSEEE CS
  Glyoxalase 104 ep...grhyfgalysfyfrDpdGill 126
                  p   +r     ++ + frDpdG+ +
  KIR60547.1 424 APrvvNRGTKLEVWAAAFRDPDGHGV 449
                 7711145555556666*******966 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         1   3.6e+03      59      87 ..     128     156 ..      91     167 .. 0.71
   2 !   34.4   0.1   8.5e-12   3.1e-08       2     104 ..     343     449 ..     342     452 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1
  Glyoxalase_6  59 rvHldlavedldaevarlvalGArvlrep 87 
                   + H+ +  +d+ ++++ + a+ A    e 
    KIR60547.1 128 QRHVRVLWDDVPTHAETAAAAVADLPPEF 156
                   45777777888888887777766665555 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 8.5e-12
  Glyoxalase_6   2 vvldaadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpe..paknr.vHldlavedldaevarlvalGArvlreprdgthgr. 94 
                   ++l ++d ++  +F+++ lg++ +++       +g +  a +a++l++++v    p  +r vH++l+v+d++ + +r+ + G r   +pr  ++g+ 
    KIR60547.1 343 ITLLVTDLGRSLEFYRDTLGFTEVDRG------SGNAVLASGATRLVLREVAGaaPMSRRlVHVNLEVDDIQGAYERMRDSGVRFTYAPRVVNRGTk 433
                   677889********************9......77777889************88444445***********************9999999998889 PP

  Glyoxalase_6  95 ......vlaDPeGneF 104
                          ++DP+G+  
    KIR60547.1 434 levwaaAFRDPDGHGV 449
                   99999********975 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0     9e-05      0.32       6     102 ..     346     429 ..     343     435 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9e-05
                   E-S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETTEEEEEEEESSTT-THHHTS-EEEEEEEEES-HHHHHHHHCTTTEEEEEEEE-GGG CS
  Glyoxalase_4   6 vVeDleaavarfsallGvgpwqryrdepqevdlafallgsgsvqieLieplegpeflaehgeglhhlaywvddldaavarleeqGfevvqkgvraga 102
                    V+Dl + ++++ ++lG+++ +r +       +a++ +g    ++ L e    + +       l h+ ++vdd++ a +r+++ G++++ +  r+  
    KIR60547.1 346 LVTDLGRSLEFYRDTLGFTEVDRGSG------NAVLASGA--TRLVLREVAGAAPM----SRRLVHVNLEVDDIQGAYERMRDSGVRFTYAP-RVVN 429
                   56666666666666666655555433......23444444..35555555544333....45699**********************98764.4444 PP

>> Glyoxalase_2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.5e-05       0.2       4     111 ..     343     449 ..     341     453 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.5e-05
                   ---EES-HHHHHHHHHHTT--.-EEEE-SSEEEETTS-EEEEHHHHHH-------S--SS-EEEEEES-HHHHHHHH..GGGS-EEEEEEE-TTS-E CS
  Glyoxalase_2   4 illvvkdieeskkFYedvlel.kikldfGenvsfetgfalkedlkelinldesiaeqsnnfeLyFevedvdaflqklkeaeniellhelkekpWgqr 99 
                   i l+v d+ +s +FY+d l   ++    G+ v  ++ + l   l+e+ +        ++ +++  ev+d++ + +++++ + +++ + +++ + g +
    KIR60547.1 343 ITLLVTDLGRSLEFYRDTLGFtEVDRGSGNAVLASGATRLV--LREVAG---AAPMSRRLVHVNLEVDDIQGAYERMRDSG-VRFTYAPRVVNRGTK 433
                   56899**************9626888899999888888763..333333...44456677778889***********9998.999999998888876 PP

                   E....EEEE-TT--EE CS
  Glyoxalase_2 100 v....irfyDpDkhii 111
                   +    + f DpD+h +
    KIR60547.1 434 LevwaAAFRDPDGHGV 449
                   4333367999999976 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   9.5   0.00038       1.4      34      89 ..      14      60 ..      11      76 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00038
  Phage_holin_3_6 34 gsgagllgaagvlallalllllvalalalaalwlaalivaavllvlagvlalvglk 89
                     +++a+l  +a +++l++l++ ++a++++          va+v+l++a++ ++ g +
       KIR60547.1 14 LIAAVLGTVATFVVLFGLGMTSWAIVALG---------VALVVLAIALATVRGGGR 60
                     56788888999999999999999998777.........899999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3119.02
//
Query:       KIR60548.1  [L=141]
Description: nucleoside diphosphate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-50  169.3   0.0    4.5e-50  169.2   0.0    1.0  1  NDK       Nucleoside diphosphate kinase
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.26   11.1   0.0    1.6  1  ACT       ACT domain


Domain annotation for each model (and alignments):
>> NDK  Nucleoside diphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.2   0.0     5e-54   4.5e-50       1     132 [.       8     139 ..       8     141 .] 0.99

  Alignments for each domain:
  == domain 1  score: 169.2 bits;  conditional E-value: 5e-54
                 EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEECE-HHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHHHHHHHHH--SSTTTSSTTS CS
         NDK   1 ertlvliKPdavkrgligeiisrleekglkivalkmlrlteeqaeehYaehkgkpffeelvefmtsgpvvalvlegedaiekvreliGatnpaeaapgt 99 
                 ertlvliKPdav+rgl+gei+sr+e+kgl+i a+   +++ + a++hYaeh +kpf++ l  fmt gp+valvl g+++ie+vr +iG+t+ ++aa+gt
  KIR60548.1   8 ERTLVLIKPDAVRRGLVGEILSRFERKGLRIDAMVSRTMDGDFADQHYAEHVDKPFYPPLKGFMTGGPLVALVLAGDQVIEVVRGMIGSTDGRRAAAGT 106
                 89************************************************************************************************* PP

                 HHHHH-SSSTT-SEEE-SSHHHHHHHHHHHSTG CS
         NDK 100 iRadfgvslgeNlvHgSdseesaereiklfFke 132
                 iR+df++s +eNlvH+Sds++sa+rei+l+F+e
  KIR60548.1 107 IRGDFSLSNRENLVHASDSTDSAKREIALWFPE 139
                 *******************************97 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.9e-05      0.26      10      44 ..      20      54 ..      20      65 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.9e-05
                STTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEE CS
         ACT 10 rPGlLarvfgaladrgiNidsieqrssedkvagiv 44
                r Gl +++++ + + g+ id + +r+++  +a+ +
  KIR60548.1 20 RRGLVGEILSRFERKGLRIDAMVSRTMDGDFADQH 54
                67*************************98766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1006.60
//
Query:       KIR60549.1  [L=146]
Description: alkylhydroperoxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-18   64.5   4.7    9.1e-18   64.1   1.6    2.0  2  CMD            Carboxymuconolactone decarboxylase family
  ------ inclusion threshold ------
      0.076   12.4   0.0       0.12   11.7   0.0    1.3  1  Brucella_OMP2  Brucella outer membrane protein 2


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   1.6     1e-21   9.1e-18       5      84 ..      12      91 ..       9      92 .. 0.90
   2 ?    1.4   0.1     0.037   3.3e+02      24      37 ..     114     127 ..     103     140 .. 0.74

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 1e-21
                HHHHHHHHHHCC.GSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHHHH CS
         CMD  5 raltalrealla.reggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaaraAlaaae 84
                +a+ a+ + + + r++ +d++  eL++l++s++ngc++Cvd+H r+Al aG++  ++ +v+a+++a  + +++r Ala+++
  KIR60549.1 12 DAYRAVSGLERYaRDN-VDHTVLELVKLRASMLNGCAFCVDMHSREALAAGESSRRLFAVAAWREAPFFDERERTALALTD 91
                5666666667776777.************************************************************9986 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.037
                 HHHHHHHHHHHHHT CS
         CMD  24 kereLialavsaan 37 
                  e+eL+ l+v++a+
  KIR60549.1 114 SEKELADLTVAIAT 127
                 57777777777765 PP

>> Brucella_OMP2  Brucella outer membrane protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.3e-05      0.12      85     139 ..      24      75 ..      10      87 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.3e-05
  Brucella_OMP2  85 aannvrhvavdvvvgrasvvvvvvatlfesdhsreavsasegvrdlagavgasrd 139
                    a +nv h  ++ v  ras+     a +    hsrea++a+e  r l  av a r+
     KIR60549.1  24 ARDNVDHTVLELVKLRASMLNGC-A-FCVDMHSREALAAGESSRRLF-AVAAWRE 75 
                    779**********9999987543.3.33356***********99985.6777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1010.59
//
Query:       KIR60550.1  [L=527]
Description: alkaline phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-76  257.4   0.0    2.3e-76  257.1   0.0    1.1  1  PhoD      PhoD-like phosphatase
      8e-18   64.8   0.6    2.1e-17   63.4   0.0    2.1  2  PhoD_N    PhoD-like phosphatase, N-terminal domain


Domain annotation for each model (and alignments):
>> PhoD  PhoD-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.1   0.0   2.5e-80   2.3e-76       4     348 ..     166     507 ..     160     509 .. 0.87

  Alignments for each domain:
  == domain 1  score: 257.1 bits;  conditional E-value: 2.5e-80
        PhoD   4 vSCqny....eagyfnayrelaeeedlDlvlhlGDyiYeyg..pgeyaseaaelgrevepp...keivtladYReryaqyktdadlqaahaaapfivvw 93 
                 +++q++    ++g ++++++++   ++D++l++GD++Y++g  +++++ ++++++r+ ++p   k+++tla+YR ++a+++ d++l+a+ a++p + +w
  KIR60550.1 166 IAGQGWgiapDFGGMRIFQAMRSV-RPDFFLCSGDTVYADGplAETVTLPDGRIWRNLVTPeksKVAETLAEYRGQFAYNLLDEHLRAFVAEVPQVNQW 263
                 578899777448***********9.***************9888999999*********99999*********************************** PP

        PhoD  94 DDHEvaNnswsggaenhq.eetegdfekrkaaAlqAyfEwmPireakpgeeeriyrsfeyGdladlflLDtRqyrrdqavsyegdeleaaeaevkdpar 191
                 DDHEv+Nn w++g+   + ++te++++ ++a+A+qA+ Ew+P+ +        +yr+++yG+l+d+f+LD+R+y+++++            ++ +dp r
  KIR60550.1 264 DDHEVTNN-WYPGEVLADaRYTEQRVDVLAARARQAFGEWLPVPAG-----GPLYRKLSYGPLLDVFVLDMRTYKDPNDG-----------NTYADPLR 345
                 ********.*****999999**********************9766.....68*************************96...........56789*** PP

        PhoD 192 tlLGeeQeqwLkaeLkasrarWkvlaqqvlmskvdldaelaegalpvnlDawdGypaeRe....rlletikeakirnvVvLtGDvHaawandld..... 281
                  lLG+eQ++wL +eLk+sra+Wkv+a++++++ v  d +++eg     ++   G pa+Re    ++l  +++a+++ +V+Lt+DvH+++a+++d     
  KIR60550.1 346 GLLGREQREWLVRELKRSRATWKVIANDLPIGLVVPDGSAQEGV----AQGDPGAPAGRElefaEVLGSAHRAGVTGIVFLTADVHYTAAHHYDparaa 440
                 ***********************************666666666....6666677777777777*****************************644334 PP

        PhoD 282 ykdpdgeavgvEfvtgsvssgglgeylaeaadateeallaanpelky...telderGyveldlteeavta 348
                 ++d+++   ++Efv+g+ ++g++g+++   +  +++ +++a p+++       +++G v +d +++a t+
  KIR60550.1 441 VADFTP---FWEFVSGPAHAGAFGPNALDGTFGPKAVFVNAPPRANTspaEGFQHFGEVAIDGESGAFTV 507
                 555555...******************9555555555555555554422234588999999999888776 PP

>> PhoD_N  PhoD-like phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   2.3e-21   2.1e-17       1      89 [.      57     147 ..      57     148 .. 0.89
   2 ?   -2.4   0.1      0.81   7.3e+03       2       9 ..     388     395 ..     387     397 .. 0.86

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 2.3e-21
      PhoD_N   1 hGVasGDptadsvilWTRvapeseerpvrvevevaedeafkkvvrkgtalatseldytvkvevtgLkpgqeyfYrfr......agsesspv.Grtr 89 
                 hGV+sGD+tads+++WTR++     rp r+ vev+++++++ ++  ++++ +++ dyt +v+v+gL+ g++++Yr+       +g +s+p+ G++ 
  KIR60550.1  57 HGVQSGDVTADSALVWTRAD-----RPGRMWVEVSRRPDLRGARLLRGPVLDPSADYTGRVRVRGLPCGERLHYRVSvesldrHGVRSEPLvGSFA 147
                 9*******************.....***************************************************97666544445555556665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.81
      PhoD_N   2 GVasGDpt 9  
                 GVa GDp 
  KIR60550.1 388 GVAQGDPG 395
                 9*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3518.91
//
Query:       KIR60551.1  [L=1057]
Description: isoleucine--tRNA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.5e-181  604.7   0.0   2.1e-181  604.3   0.0    1.1  1  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
      4e-27   95.1   0.0    7.8e-27   94.1   0.0    1.5  1  Anticodon_1   Anticodon-binding domain of tRNA
    1.3e-17   63.6   0.7    2.9e-07   29.6   0.0    4.0  3  tRNA-synt_1g  tRNA synthetases class I (M)
     0.0019   17.6   0.0     0.0047   16.3   0.0    1.6  2  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  604.3   0.0  4.7e-185  2.1e-181       2     597 ..      26     654 ..      25     658 .. 0.95

  Alignments for each domain:
  == domain 1  score: 604.3 bits;  conditional E-value: 4.7e-185
  tRNA-synt_1   2 lyekWeeedvfkkeleke...ke.kkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkkl 95 
                  ++e+W ++++f++++e++   ++ k+e++++dgPP+++G +H+Gh ++  +kd v ry++m+G +v++++GwD++Gl+ e + ek+lg++ k e  +l
   KIR60551.1  26 VLEHWAADKTFEASVEARpagDDgKNEYVFYDGPPFANGLPHYGHLFTGYVKDAVPRYQTMRGRHVERRFGWDCHGLPAEVVAEKQLGITSKAEILDL 123
                  689**********9987533334599************************************************************************ PP

  tRNA-synt_1  96 greefrekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEv....eykdkkdalih 189
                  g+++f+e +r  + e+++++++ v+r  ++vDf ++y+Tld +++e+v+++f+ l+dkgl+y+g +++ ++++++t+ls+ E+     ykd +d++++
   KIR60551.1 124 GVARFNEACRTSVLEFTQDWERYVTRQARWVDFANDYKTLDLDYMESVMWAFKTLHDKGLVYEGFRVLAYCWRCETPLSNTETrmddVYKDRHDPTLT 221
                  ***********************************************************************************888789999****** PP

  tRNA-synt_1 190 vafpladkee........vklviaTTtPeTllgdtavavnpeldyv...itkeklilaeallkslvkkesekkiledergkeLegkevelpl...... 270
                  v f+l+++++        v+l ++TTtP+Tl++++a+av p+++y+    ++ ++++  a+l + +k+ + ++ + ++ g++L+g++++++       
   KIR60551.1 222 VWFELTADDAapellrgpVRLGVWTTTPWTLPSNLALAVGPDIEYAvleRDGSRYVVGAARLGAYAKELEGYEQVGTVYGRDLVGRRYTPLYdflvsr 319
                  *****87777799*********************************88888999*************99********************999999999 PP

  tRNA-synt_1 271 .vnrkipiiaddyvdkeaGtGvVkiaPahdedDyevgkkynlevinildedgtlteeaaefeglkvfdarkkvveelkekglllkaekiehsvpfcer 367
                    +++ +++  ++v++e GtG+V++aPa++edD +v++  ++++++++d++ ++t  ++ ++g +vfd +k v++elke+g+ l++++ +hs+p+c+r
   KIR60551.1 320 aGENAYQVLGAEFVTTEDGTGIVHLAPAFGEDDQNVCNAAGIPTVVTVDDHTRFTALVPPYQGEQVFDVNKPVIRELKERGVVLRQDTYTHSYPHCWR 417
                  8788999******************************************************************************************* PP

  tRNA-synt_1 368 skkpiiyrateqWfvrvkeladaalkavekvqfvpks.kekryaswleniqdWciSRqrwWGhriplfvsketeevvvreelke.lvagreeeeaekk 463
                   ++p++y+a+++Wfv v++++d +++ +++++++p   k+ ++ +wl+n++dW iSR+r+WG +ip++ s++ +  + r ++   l + +    ++ +
   KIR60551.1 418 CDTPLVYKAVSSWFVAVTQFKDRMVELNQQINWTPGHiKDGSFGKWLANARDWSISRNRFWGSPIPVWKSDDPN--YPRLDVYGsLDEIERDFGVRLT 513
                  ***********************************998999******************************988..6655555404444455678899 PP

  tRNA-synt_1 464 alekeakdkl.......kkekgelekdedvlDvWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillslaltgsePfkevlvhg 554
                  +l++ a+d+l        +++ +++++++vlD+WF+Sgs+pf++++yp+e+++ +++ +p d+++e + ++rgW++++ +l++al+++  f++ l hg
   KIR60551.1 514 DLHRPAVDDLvrpnpddPTGRSTMRRVPEVLDCWFESGSMPFAQVHYPFENRDWFEHHYPGDFIVEYIGQTRGWFYTMHVLATALFDRPAFRNCLSHG 611
                  **********9**998888999**************************************************************************** PP

  tRNA-synt_1 555 lvrdeeGrKmSKslgNvidpldvikkygadalRltlilsdvgr 597
                  +++ ++GrKmSKsl N++d  +v ++yg da+R++l++s+v+r
   KIR60551.1 612 ILLGSDGRKMSKSLRNYPDVYHVFDSYGSDAMRWMLMSSPVLR 654
                  *************************************999876 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.0   1.7e-30   7.8e-27       1     148 [.     705     843 ..     705     847 .. 0.90

  Alignments for each domain:
  == domain 1  score: 94.1 bits;  conditional E-value: 1.7e-30
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkraaqevllevletllrllaPfmPfitEelwqreeeelgk 98 
                  dr++l+++n+lv+++++ +++y+++ a++ + +f +++l +wy++ +++r++s +a+    a  +l++vletl+r+ aP +P ++Ee+w    + l +
   KIR60551.1 705 DRYVLAKTNELVATAQAQLDSYDISGACATVRSF-LDALTNWYVRRSRDRFWSGDAD----AFDTLWTVLETLCRVVAPLAPLTAEEIW----RGLTG 793
                  8********************************6.9****************98864....55**************************....999** PP

  Anticodon_1  99 kesimlaewpekaeel..ekeleeeevellkeivkairklrselkikpssel 148
                  ++s++l +wp+ aee   + +l  ++++ ++++++a+ +lr+ +++  + +l
   KIR60551.1 794 ERSVHLTDWPA-AEEFpaDHDL-VAAMDAVRDVCSAALSLRKAKGLRVRLPL 843
                  **********5.5444355444.88******************999877765 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   6.4e-11   2.9e-07       8     133 ..      60     204 ..      57     209 .. 0.70
   2 !   15.1   0.1   1.6e-06    0.0073     166     239 ..     412     486 ..     392     496 .. 0.86
   3 !   13.1   0.0   6.4e-06     0.029     311     357 ..     603     650 ..     546     673 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 6.4e-11
                   B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHT.TS-HHH.H....HHHHHH.......HHHHHHHHTT......--- CS
  tRNA-synt_1g   8 pYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAeke.gvtpee.l....vekvhe.......eikelfkkln......isf 85 
                   p+ang +H Ghl +    D++ Ry+ +rg++v    g D hG p e+ Aek+ g+t ++ +    v++++e       e++++++++       + f
    KIR60551.1  60 PFANGLPHYGHLFTGYVKDAVPRYQTMRGRHVERRFGWDCHGLPAEVVAEKQlGITSKAeIldlgVARFNEacrtsvlEFTQDWERYVtrqarwVDF 156
                   89***********9999********************************986588775312111223333300000003444444332111222344 PP

                   SEEEETTSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GG CS
  tRNA-synt_1g  86 dkygrttseehkelvqeifkklkekgliyekeieqlycpkderflpdr 133
                    + ++t + +  e v   fk+l++kgl+ye+    +yc ++e+ l++ 
    KIR60551.1 157 ANDYKTLDLDYMESVMWAFKTLHDKGLVYEGFRVLAYCWRCETPLSNT 204
                   444567777778888888999999999999999999999999888765 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.6e-06
                   ...........EEE.EEEEEE-GGGGHHHHHHHH.HH-TTSHHHHHHHH.HHHHT----EE-ESS-SSS-EET..T CS
  tRNA-synt_1g 166 npksaisgskpevketehlffklskfekklkewieeeekeleenvkkivkewlkegLkdlaisrdldwGipvP..g 239
                    p++  +++  ++k  +++f  + +f++++ e  ++ + +  +       +wl +  +d++isr+  wG p+P  +
    KIR60551.1 412 YPHCWRCDTPLVYKAVSSWFVAVTQFKDRMVELNQQINWTPGHIKDGSFGKWLAN-ARDWSISRNRFWGSPIPvwK 486
                   599*****************************996666555555667889***99.9***************9652 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 6.4e-06
                   --S-EEEE--.EEE--------------HHHHHHHH-HHHHHHHHHHH CS
  tRNA-synt_1g 311 lpkkvvahey.ltvegkKlSkSrgvvvkakealerldadllRYylaae 357
                   + ++  +h+  l  +g+K+SkS ++  ++ ++ +++ +d++R++l+++
    KIR60551.1 603 AFRNCLSHGIlLGSDGRKMSKSLRNYPDVYHVFDSYGSDAMRWMLMSS 650
                   445566666515689******************************985 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     1e-06    0.0047     230     282 ..     596     649 ..     592     654 .. 0.84
   2 ?   -3.9   0.0       1.5   6.7e+03      88     112 ..     884     908 ..     866     909 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1e-06
                   HHHSS.S--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHS CS
  tRNA-synt_1e 230 eaafd.kqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlRlllls 282
                   +a+fd   + +   h   l  +g+kmsksL+n+  + +v+ ++ + ++R++l+s
    KIR60551.1 596 TALFDrPAFRNCLSHGILLGSDGRKMSKSLRNYPDVYHVFDSYGSDAMRWMLMS 649
                   688894455566666667889******************************997 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.5
                   HHTT----SB--BGGGGHHHHHHHH CS
  tRNA-synt_1e  88 eaLnvlkptleprvsekvdeiielv 112
                   + L v +  l prv ++v+++i+ v
    KIR60551.1 884 QVLTVVPRALGPRVGKQVQQVIKAV 908
                   4688899999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1057 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.48
# Mc/sec: 6630.04
//
Query:       KIR60552.1  [L=233]
Description: glycerol acyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-23   80.5   0.0    1.1e-22   80.1   0.0    1.2  1  Acyltransferase  Acyltransferase
  ------ inclusion threshold ------
       0.04   13.5   0.1       0.08   12.5   0.1    1.5  1  DUF374           Domain of unknown function (DUF374)


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   1.3e-26   1.1e-22       2     134 ..      22     152 ..      21     153 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 1.3e-26
  Acyltransferase   2 vrvtglenlpekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsi.pllgflmr....llgfifidRksnaraagsleniselle 90 
                       +v+gle++pe g+ai++ NH s +D l+l  ++     pr + + ak e+++   + g +++     lg+i+++R + + a ++ + + ++l+
       KIR60552.1  22 PTVEGLEHIPETGGAIFAGNHLSVADELFLGTVV-----PRHLAFWAKSEYFKGtGVKGAFSKfvltGLGAIPVERAGGRAALSAFDAAIPALR 110
                      689*******************************.....9**************555555555877789*******99999999999999**** PP

  Acyltransferase  91 egklvviFPEGtrsregellpfkkGlvrlaakakkgvpivPvai 134
                       g+lv ++PEGtrs +g+l++ ++G++rla+ a  gvpi+Pv++
       KIR60552.1 111 GGDLVAVYPEGTRSPDGRLYRGRTGAARLAVAA--GVPIIPVGM 152
                      *********************************..*******97 PP

>> DUF374  Domain of unknown function (DUF374)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   8.9e-06      0.08      18      68 ..      75     125 ..      74     126 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.9e-06
      DUF374  18 GeliarvlerlGiktirGSsskggaealremlralkegesvaitpDgPrGP 68 
                 G +   vl+ lG  ++  ++ + + +a+ +++ al+ g  va+ p g r P
  KIR60552.1  75 GAFSKFVLTGLGAIPVERAGGRAALSAFDAAIPALRGGDLVAVYPEGTRSP 125
                 566667899999***********************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1689.61
//
Query:       KIR60553.1  [L=489]
Description: deoxyribodipyrimidine photolyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-34  118.6   0.0    5.3e-33  114.7   0.0    2.1  2  DPRP      Deoxyribodipyrimidine photo-lyase-related protein


Domain annotation for each model (and alignments):
>> DPRP  Deoxyribodipyrimidine photo-lyase-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.7   0.0     3e-37   5.3e-33       2     209 ..       5     191 ..       4     202 .. 0.89
   2 ?    1.4   0.0     0.014   2.5e+02     168     192 ..     441     465 ..     433     487 .. 0.79

  Alignments for each domain:
  == domain 1  score: 114.7 bits;  conditional E-value: 3e-37
                 E--TT---TT-HHHCT--TTT-EEEEE--HCCCCSTTS-HHHHHHHHHHHHHHHHHHHHTT-EEEEE-TT-TT--SHHHHHHHHHHHH--SEEEEE--S CS
        DPRP   2 lilgdqLskehsalkeadkkedrvlliEsaqeatyvrhHkqKlvlifaaMrhFaeeLrekgvevtylelddkenesleeelealleelkieelevtepd 100
                 +++ dqL ++   l++   ++++vlliEs++ ++++ +H+qK  li++a+rh a+eL   g + tyl+++     +++e l+++ e      +ev++p+
  KIR60553.1   5 WLFADQLGPH--FLDD---RRQPVLLIESKAVFRRRVYHRQKAHLILSALRHRAAEL---GAQATYLRTE-----TYAEGLRKVRE-----PVEVCHPT 85 
                 6777777654..3444...468*********************************99...66799**999.....78888888765.....699***** PP

                 SHHHHHHHHCHHHHCTSEEEEE--TTSSS-HHHHHHHHC.C-SS--HHHHHHHHHHHHTTTEETTE.EGGGSS--GGGS-------..TTS-------- CS
        DPRP 101 dkrleqrleelaeklelevevledehFltsreefkewak.grkklrmedFYremRkrlgiLmdedgkPvGGkWnfDaeNRkklpkk..levpkplrfep 196
                  +r ++ +++     +++v  l+ + F+ts ++f+ewa+ +r  lrme FYr  R ++++L+d+d+ PvGG+W++D eNR+++pk+  l vp+ + +++
  KIR60553.1  86 SRRALEFVRRR---DGVTV--LPPRGFVTSLDDFAEWADgRRGALRMEAFYRFAREHHRVLVDGDE-PVGGRWSLDVENREPPPKDgkLAVPAAPVPKE 178
                 *******9995...68999..******************445789******************997.******************9999********** PP

                 -HHHHHHHHHHHH CS
        DPRP 197 daitkevielvek 209
                 d+i  ev +++++
  KIR60553.1 179 DDIDAEVRADLDR 191
                 *******998876 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.014
                 GGGSS--GGGS-------TTS---- CS
        DPRP 168 vGGkWnfDaeNRkklpkklevpkpl 192
                 + G W f + NR ++p+++++ +++
  KIR60553.1 441 TAGYWAFLDRNRDRIPANARMARTM 465
                 5799**************8877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3427.91
//
Query:       KIR60554.1  [L=181]
Description: hypothetical protein TK50_21740 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   11.4   0.0       0.22   11.2   0.0    1.2  1  PHZA_PHZB  Phenazine biosynthesis protein A/B


Domain annotation for each model (and alignments):
>> PHZA_PHZB  Phenazine biosynthesis protein A/B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.2e-05      0.22      25      56 ..      53      84 ..      35     125 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.2e-05
                GGGGGGGGGEEEEEEEEESS-TTSS-EEEESH CS
   PHZA_PHZB 25 eerlkrhelfvedgvaglwttdsgepivirgr 56
                e+  +  +l++ed  ag++++ +g+p+v+ g 
  KIR60554.1 53 EAETREAHLLAEDTFAGVYASSAGKPVVVFGG 84
                5566777899*****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1151.62
//
Query:       KIR60555.1  [L=663]
Description: Fe-S oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-17   62.4   0.0    3.1e-16   60.2   0.0    2.2  3  Radical_SAM  Radical SAM superfamily
    0.00047   20.2   0.1     0.0013   18.8   0.1    1.7  1  B12-binding  B12 binding domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.88   7.8e+03      50      88 ..     155     192 ..     146     219 .. 0.61
   2 !   60.2   0.0   3.4e-20   3.1e-16       1     166 [.     278     443 ..     278     444 .. 0.97
   3 ?   -0.7   0.0      0.18   1.6e+03      63      91 ..     443     485 ..     437     501 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.88
                  EEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  50 vilgggepllypdfvellerlaklavpgiritvetngtl 88 
                  vi+ gg+  ++p+ + +   +a l  +g + ++e+ +++
   KIR60555.1 155 VIVAGGHAAFNPEPIADFVDAAVLG-DGEEAVLEITAIV 192
                  6777777777777666666666663.5555555555444 PP

  == domain 2  score: 60.2 bits;  conditional E-value: 3.4e-20
                  EEEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHG...HHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxx RF
  Radical_SAM   1 vvvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpd...eekle 95 
                  v+++rgC+++C+fC+ +     ++++r++s+  + + v+++ +  g +ev l++    +++++ +    la+   +g +++++ + t++d    + ++
   KIR60555.1 278 VEIFRGCTRGCRFCQAGM---ITRPVRERSITTVGQMVQQGLEFSGFHEVGLLSLSSADHSEIGDMCSGLAEQY-AGTNVSLSLPSTRVDafnIDLAQ 371
                  6799*************9...6*******************98889***************************8.*********************** PP

                  HHHHTT.-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET.EEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  96 rllelg.vdrvslgleaaddekvlklmnrghtfeevlealeklreagikr.vvdrivglpGendeeleellel 166
                  +l + g  + +++  e ++++ ++k +n++ + e++++++ ++  +g++    +++ glp e+d+++ e++++
   KIR60555.1 372 ELSRNGrRTGLTFAPEGGSER-IRKVINKMVSKEDLIRTVVTAYTNGWRQvKLYFMCGLPTETDADVLEIADM 443
                  *********************.****************************99*****************9985 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.18
                  HHHHHHHHHHTC..CCTEEEEEEECSSCHG............H CS
                  xxxxxxxxxxxx..xxxxxxxxxxxxxxxx............x RF
  Radical_SAM  63 fvellerlakla..vpgiritvetngtlpd............e 91 
                  ++ ++ r+ + a  +++ir+tv++ g++p             +
   KIR60555.1 443 MAHEVIRAGRAAtgSKDIRCTVSIGGFVPKphtpfqwaamerP 485
                  55555555555577899*******9999987665555544442 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   1.4e-07    0.0013      50     120 ..     114     188 ..      99     189 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.4e-07
  B12-binding  50 e.kpdvvglSalltsqleavkelvel.......lkrirprvkvvvGGahpsldpeetleaklgiddvvvgegedaleal 120
                    ++dv g+S+     +++    ++l       + r +++  +v+GG h+ + pe +      +d +v+g+ge+a+ ++
   KIR60555.1 114 VrDFDVFGVSFSTELGYTNLLTAIDLagipllaADRTDADPVIVAGG-HAAFNPEPIA---DFVDAAVLGDGEEAVLEI 188
                  33779999999877778888777777888999777777776777777.89******54...788***********9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4527.62
//
Query:       KIR60556.1  [L=1102]
Description: ribonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     4e-104  347.8   0.0   5.4e-104  347.4   0.0    1.2  1  RNase_E_G  Ribonuclease E/G family
    0.00052   20.3   0.0     0.0012   19.2   0.0    1.5  1  S1         S1 RNA binding domain
  ------ inclusion threshold ------
        5.3    6.5   8.9        9.4    5.7   8.9    1.4  1  PPP4R2     PPP4R2


Domain annotation for each model (and alignments):
>> RNase_E_G  Ribonuclease E/G family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.4   0.0    9e-108  5.4e-104       2     270 .]     669     937 ..     668     937 .. 0.99

  Alignments for each domain:
  == domain 1  score: 347.4 bits;  conditional E-value: 9e-108
   RNase_E_G   2 laGrylVllpegkkvgvSkkiedeeererlkelleelkpeevGlIvRtaaegaseeelekdleelkkkweeilekakkrkapsllyeeedlllrvlrdl 100
                 l+Gr lV++p+g++ g+S+k++d +er+rl+++l++l+p+++G+IvRtaaegase+el++d+++l+ +we+i++ka++  ap llyee+dl++rv+rdl
  KIR60556.1 669 LSGRHLVYVPNGNASGISRKLPD-TERKRLRDALKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDIQAKAASGGAPVLLYEEPDLVIRVVRDL 766
                 89*********************.88**************************************************99********************* PP

   RNase_E_G 101 lnedieeivvddkelyeeikeyleevapeleekvelyeeeeplfelysiekqiekalsrkvwlksGgylvIeqTEAltvIDVNsGkftgkk.nleetvl 198
                 +ned++e+v++ +e+y ++++yl++v+p+l ++v+ + +++++f+ y+i++qi k l+rkv l+sGg+lvI++TEA+tvIDVN+Gk+tg+  nleetv+
  KIR60556.1 767 FNEDFRELVIEGDESYGMVESYLSHVSPDLVDRVRRHAGTTDVFATYRIDEQILKGLDRKVFLPSGGSLVIDRTEAMTVIDVNTGKYTGSGgNLEETVT 865
                 *************************************9999**********************************************99988******* PP

   RNase_E_G 199 ktNleAaeeiarqlrLRnlgGiIviDFIdmkeeenreevleelkealkkDraktqvleitklgLveitRkrv 270
                 ++NleAaeei+rqlrLR++gGi+viDFIdm  e+nre vl++l+e+l +Dr+k+qv+eit+lgLv++tRkr+
  KIR60556.1 866 RNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGLVQMTRKRI 937
                 **********************************************************************95 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.9e-07    0.0012       4      62 ..     588     653 ..     586     654 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.9e-07
                 TTCEEEEEEEEEET..TEEEEEETTTEEEEEEGGGSSSS.....CEESCHHHCEETTEEEEEEEEE CS
          S1   4 kgevveGeVtsvtk..gGafVelgngvegfvpaselsrd.....arvedpdevlkvGdevkvkvlk 62 
                 +g+v+ G+V++v +  ++afV++g g  + + a e+ +d      r +++++ l+ Gd v v+v+k
  KIR60556.1 588 AGNVYLGKVQNVLPsmEAAFVDIGRGRNAVLYAGEVNWDttgleGRARSIEQALRSGDSVLVQVTK 653
                 79************99****************************899*****************97 PP

>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   8.9    0.0016       9.4     185     285 ..     354     465 ..     316     468 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0016
      PPP4R2 185 vsipwvdekteselspfikeidsimsvnlgfedeeekeeddneseesaseseeiteekdesvkvee................kdddeeddeedtdyvee 267
                 vs p  +e  e++ +p+++       v++ ++ e   e+    +ee a+e+ee  +++de+++ ++                   de dd+e +++ + 
  KIR60556.1 354 VSTPVEPEPVEEQPEPSRRRRRARREVEPVEQAEA-PEV----EEEPAAEAEEPEAAEDEEDEETAarrrrrrgrrgrgrgkGGADEADDDEAEEAAQA 447
                 45555555555556666555555544544333333.333....45555666665555555555555677888999999988755666666666666666 PP

      PPP4R2 268 eeddesedddeeeeeeee 285
                 ee + +++ de+e e++e
  KIR60556.1 448 EEPEAEAEGDEDEGETDE 465
                 666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.15u 0.34s 00:00:01.49 Elapsed: 00:00:00.53
# Mc/sec: 6314.38
//
Query:       KIR60557.1  [L=176]
Description: hypothetical protein TK50_21760 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1285.60
//
Query:       KIR60558.1  [L=104]
Description: 50S ribosomal protein L21 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-36  122.4   1.3    8.4e-36  122.3   1.3    1.0  1  Ribosomal_L21p  Ribosomal prokaryotic L21 protein


Domain annotation for each model (and alignments):
>> Ribosomal_L21p  Ribosomal prokaryotic L21 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   1.3   4.7e-40   8.4e-36       1     101 []       1     100 [.       1     100 [. 0.94

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 4.7e-40
                     XEEEEECSTEEEEESSSEEEEEESSSSSTTCEEEESSEEE....EE.ECTSSSESSTCEEEEEEEEEE---EEEEEEETTTTEEEEEEE--EEEE CS
  Ribosomal_L21p   1 myAiietgGkqykVeegdvlkvekleaevgdkveldkVllvgskddvkvGaplvegakVeaevvehgkgkkiivfkkkrrknyrrkqghRqkytk 95 
                     myAi++tgGkqykV+egdv++vekl++++gd v+l+ Vllv+++ d++++a  ++++ V++e+ +h+kg+ki+++k+k++++y+++qghRq++t+
      KIR60558.1   1 MYAIVKTGGKQYKVAEGDVIEVEKLAGAPGDAVKLTAVLLVDGD-DLVTDAAKLAEVAVSGEIAAHTKGPKIKIHKFKNKTGYHKRQGHRQPLTQ 94 
                     9***************************************7775.56666666777*************************************** PP

                     EEEEEE CS
  Ribosomal_L21p  96 lrItkI 101
                     +++t+I
      KIR60558.1  95 VKVTGI 100
                     ****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 721.79
//
Query:       KIR60559.1  [L=84]
Description: 50S ribosomal protein L27 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-35  119.2   1.6    6.2e-35  119.1   1.6    1.0  1  Ribosomal_L27  Ribosomal L27 protein


Domain annotation for each model (and alignments):
>> Ribosomal_L27  Ribosomal L27 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   1.6   3.5e-39   6.2e-35       1      79 []       2      80 ..       2      80 .. 0.99

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 3.5e-39
  Ribosomal_L27  1 AhkkagGstkngrdskgkrlGvKkfggqlvkagnIivrQrgtkfhpGenvgiGkdhtlfAlvdGvVkfekkkkrkyvsv 79
                   Ahkk+++s++ngrds+++rlGvK+fggq+v+ag+I++rQrgtkfhpG+ vg+G d+tlfAl++G V f +k+ rk+vs+
     KIR60559.1  2 AHKKGASSSRNGRDSAAQRLGVKRFGGQVVSAGEILIRQRGTKFHPGDLVGRGGDDTLFALAAGSVLFGTKRGRKTVSI 80
                   9****************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       180  (0.0100396); expected 358.6 (0.02)
Passed bias filter:                      157  (0.00875676); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 599.14
//
Query:       KIR60560.1  [L=501]
Description: GTPase CgtA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-50  169.4  10.7    5.9e-50  168.9  10.7    1.2  1  GTP1_OBG     GTP1/OBG
    7.5e-28   96.3   0.0    1.3e-27   95.6   0.0    1.4  1  DUF1967      Domain of unknown function (DUF1967)
      9e-23   80.5   0.0    1.5e-22   79.8   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
    2.7e-10   40.0   0.0    1.3e-09   37.8   0.0    1.9  1  FeoB_N       Ferrous iron transport protein B
    0.00018   21.0   0.0    0.00036   20.0   0.0    1.4  1  Arf          ADP-ribosylation factor family
     0.0017   18.3   0.0      0.073   13.0   0.0    2.5  3  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.031   14.0   0.0      0.062   13.0   0.0    1.5  1  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
      0.078   12.3   0.0       0.12   11.7   0.0    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region


Domain annotation for each model (and alignments):
>> GTP1_OBG  GTP1/OBG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.9  10.7   2.6e-53   5.9e-50       1     154 [.       5     157 ..       5     158 .. 0.99

  Alignments for each domain:
  == domain 1  score: 168.9 bits;  conditional E-value: 2.6e-53
                 EEEEEEEEE----------BEEETTCCCEEB-S--------EEEEE-TT--SSGCCCTSSEEE-------BTTTB-------EEEEESTTEEEEETTTT CS
    GTP1_OBG   1 vdevkikvkaGkGGdGcvsfrrekyvpkggpdGGdGGkGGdvileadeklntlldlkykkkikAenGenGkgknksGkkgkdlvikvPvgtvvkdeetg 99 
                 vd+v ++++aG+GG+Gcvs++rek++p+ggpdGG+GG+GG+v l++d++++tlld+++++++k+enG+ G g+n++G++g+ lv+kvP gtvv+ +  g
  KIR60560.1   5 VDRVVLHLQAGDGGHGCVSIHREKFKPFGGPDGGNGGHGGSVTLVVDPQVHTLLDFHFHPHVKGENGKGGAGSNRDGANGRGLVLKVPNGTVVQ-TPGG 102
                 79*******************************************************************************************9.6899 PP

                 EEEEEE-STT-EEEEE-----EE-GGGC-CSSCSS--EEEE-----EEEEEEEEC CS
    GTP1_OBG 100 evladltedgeevlvakGGkgGkGnaafksstnraprfaekGeegeereleLelk 154
                 evlad+  +g+++ va+GG+gG+Gna++++++++ap fae Ge+ge+ ++ Lelk
  KIR60560.1 103 EVLADMVGAGTTFEVARGGRGGRGNASLANARRKAPGFAELGEPGEQLDVVLELK 157
                 9*****************************************************9 PP

>> DUF1967  Domain of unknown function (DUF1967)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.0   5.6e-31   1.3e-27       1      70 []     356     424 ..     356     424 .. 0.97

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 5.6e-31
                 ..EE.EEETTEEEEE-HHHHHHHTTEEE-TGGGHHHHHHHHHHTTHHHHHHTTT--TT-EEEETTEEEE- CS
     DUF1967   1 ftiekkdeegvfvVeGekierlvkqtnfeneeavrrfarrLkklGvedaLrkaGakeGdtVrIgdveFey 70 
                 fti+  + +g f V+G+++er+v+qtnf+n+eav+++a+rL++lGved+L kaGa++Gd VrIg+ eF++
  KIR60560.1 356 FTIT-AEPDGSFTVRGDRPERWVRQTNFDNDEAVGYLADRLARLGVEDKLAKAGANPGDLVRIGEREFDW 424
                 8999.6678************************************************************9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   6.8e-26   1.5e-22       1     114 []     161     283 ..     161     283 .. 0.91

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 6.8e-26
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT........TTCS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvdas........eekl 90 
                 +v++vG p +GKS+Li+ ++ +k +++d+p+tT+ +n g v+++++ ++++D+pGli ga ++kglg +fl++ e + ++++v+d +         +++
  KIR60560.1 161 DVGLVGFPSAGKSSLISVISAAKPKIADYPFTTLVPNLGVVRVDNHTFTVADVPGLIPGAATGKGLGLEFLRHVErCAVLVHVIDTAtlepgrdpLADI 259
                 599*********************************************************************9988*********77888876664457 PP

                 HHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  91 kpldeeleelleeakkplilvlnk 114
                 +++++el ++   a++p +++lnk
  KIR60560.1 260 DAIESELSQYGGLADRPRLVALNK 283
                 777788888877799999999998 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   5.7e-13   1.3e-09       3     153 ..     162     322 ..     160     325 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 5.7e-13
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHC.TSSSEEEEEEEGGGHH..HHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflle.eepdvvvnvvdatnle..rnLyLt 98 
                 v lvG p +Gk++l+  ++ ak k++ +p +t   + g ++++++++++ D+PG   +   ++ + +  +fl + e+  v+v+v+d+++le  r+ +  
  KIR60560.1 162 VGLVGFPSAGKSSLISVISAAKPKIADYPFTTLVPNLGVVRVDNHTFTVADVPGL--IPGAATGKGLGLEFLRHvERCAVLVHVIDTATLEpgRDPLAD 258
                 789***************************************************8..567778889999***85378999**********965555555 PP

                 HHHHH.....TT....SSEEEEEETHHHHHHTT.EEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH CS
      FeoB_N  99 lqlle.....lg....vpvvlalnmideaekkg.ieidlkkLsekLgvpvvktsakkkegieell 153
                 ++ +e      g     p ++aln+id+ + +   ei  + L+++ g+ v ++sa+++eg++el+
  KIR60560.1 259 IDAIEselsqYGgladRPRLVALNKIDVPDGRDlAEIVRADLEAR-GLRVFEVSAATREGLKELM 322
                 55554111113233336899********98776368999999876.9***************997 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.6e-07   0.00036      19     171 ..     164     325 ..     150     329 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.6e-07
                 EEESTTSSHHHHHHHHHHSSCEE...CSSSSSEEEEEEEETTEEEEEEEE-S....SGGGGGGGGGGCTTES...EEEEEEETT-CTTHHHHHHHH... CS
         Arf  19 llGLDnaGKtTilkklkleelvt...tvPTigfnveeleiknlkftvwDvGG....qeklRplWknYfektd...avifvvDsadreRleeakeeL... 104
                 l+G  +aGK+ ++  ++  + +       T+ +n   +++ n +ftv Dv G      + + l  +++++++   ++++v+D+a  e  ++  +++   
  KIR60560.1 164 LVGFPSAGKSSLISVISAAKPKIadyPFTTLVPNLGVVRVDNHTFTVADVPGlipgAATGKGLGLEFLRHVErcaVLVHVIDTATLEPGRDPLADIdai 262
                 789999****999887665433321256799******************96522225666777667776665111666777766655333333333000 PP

                 .HHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHH CS
         Arf 105 .kalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewl 171
                  ++l +   l++ + lv  NK+D+p+  + +e+ +     +l+ +r l ++++sa ++eglke +  +
  KIR60560.1 263 eSELSQYGGLADRPRLVALNKIDVPDGRDLAEIVR----ADLE-ARGLRVFEVSAATREGLKELMFAM 325
                 0344555667799**************99998754....4667.78888**************98655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         5   1.1e+04     148     160 ..      90     101 ..      88     103 .. 0.83
   2 ?    2.4   0.0      0.06   1.3e+02     102     121 ..     162     181 ..     141     189 .. 0.73
   3 !   13.0   0.0   3.3e-05     0.073      50      98 ..     278     326 ..     266     331 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 5
                  EETTTEEEESS-S CS
  RsgA_GTPase 148 elaegglliDtPG 160
                  +++ +g+++ tPG
   KIR60560.1  90 KVP-NGTVVQTPG 101
                  677.999*****9 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.06
                  EEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallp 121
                  + lvG   +GKS+Li ++  
   KIR60560.1 162 VGLVGFPSAGKSSLISVISA 181
                  457888889******99875 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 3.3e-05
                  EEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCT CS
  RsgA_GTPase  50 vivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellk 98 
                  +++lnKiD+ + ++ +e ++++lea g++v+ vsa t+egl+el  +++
   KIR60560.1 278 LVALNKIDVPDGRDLAEIVRADLEARGLRVFEVSAATREGLKELMFAMA 326
                  799***********999999************************98776 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.8e-05     0.062      91     140 ..     276     324 ..     258     327 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.8e-05
   PduV-EutP  91 eviGiitkidlaedeenieaveelLksaGaekifevsavekegieellky 140
                 + +  + kid+++ ++  e+v+  L++ G  ++fevsa ++eg++el+  
  KIR60560.1 276 PRLVALNKIDVPDGRDLAEIVRADLEARGL-RVFEVSAATREGLKELMFA 324
                 5555678*****999999***********8.69*************9865 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.3e-05      0.12       4     108 ..     164     269 ..     162     301 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.3e-05
   Gtr1_RagA   4 LmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafvee..ylssqkeeifrnvgvliyVfDvesre.leedletlk 99 
                 L+G  ++GK+s+ s+i +   ++       t+ v +  v  ++n t+ + D++G     ++   l  +  +  ++++vl++V+D  + e  ++ l+++ 
  KIR60560.1 164 LVGFPSAGKSSLISVISA-AKPKI-ADYPFTTLVPNLGVVRVDNHTFTVADVPGLIPGAATgkGLGLEFLRHVERCAVLVHVIDTATLEpGRDPLADID 260
                 789999*********954.55654.4555555555555657999**********87554442378888888999999********98776777777777 PP

   Gtr1_RagA 100 eilealrqy 108
                  i ++l+qy
  KIR60560.1 261 AIESELSQY 269
                 777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3374.71
//
Query:       KIR60561.1  [L=149]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-15   56.2   0.1    4.3e-15   56.0   0.1    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.6e-12   46.5   0.0    4.5e-12   46.2   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.6e-11   44.2   0.0    2.2e-11   43.8   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    2.6e-05   24.1   0.0    4.2e-05   23.4   0.0    1.3  1  FR47             FR47-like protein
    4.7e-05   24.1   0.0    5.7e-05   23.8   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
     0.0005   20.1   0.0    0.00078   19.5   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
     0.0087   16.2   0.0      0.011   15.9   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.024   14.6   0.0      0.042   13.8   0.0    1.3  1  Acetyltransf_13  ESCO1/2 acetyl-transferase
      0.052   13.3   0.0      0.099   12.4   0.0    1.4  1  PanZ             Acetyltransferase (GNAT) domain, PanZ
      0.059   12.8   0.0      0.086   12.3   0.0    1.2  1  Acetyltransf_15  Putative acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.1   2.4e-18   4.3e-15      31     117 .]      39     123 ..      11     123 .. 0.88

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 2.4e-18
                     TTC.EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  31 eae.gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     +++ ++l++ + g+ +++ ++   ++   +++++ +++V+p++rg+G++++Ll ale+ a+++g+ ++ l++ +   aai+lY+ +G+
      KIR60561.1  39 HDDiRYLAVVDAGRAVACGGIQELDP---RTGELKRMYVRPAFRGRGIARQLLAALEDLAFQQGYAELRLETGSYLPAAIGLYTSCGY 123
                     455456667888999***99999999...9***********************************999***************99**8 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   2.5e-15   4.5e-12       8      75 ..      47     124 ..      15     125 .. 0.75

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 2.5e-15
                     EEETTEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHHTT.....SEEE...EE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7   8 aeddgkivGfialslld...aeitrlaVdpeyrgkGiGraLleaae.....kgii...le.qlelnaekaikfYeklGFe 75 
                     + d g+ v + ++++ld   +e++r++V+p++rg+Gi+r+Ll+a e     +g+    le  ++l  ++ai++Y ++G+ 
      KIR60561.1  47 VVDAGRAVACGGIQELDprtGELKRMYVRPAFRGRGIARQLLAALEdlafqQGYAelrLEtGSYL--PAAIGLYTSCGYA 124
                     3334888888888888899889999*****************98223455666332224445555..479********96 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   1.2e-14   2.2e-11      28     109 ..      39     126 ..      31     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.2e-14
  Acetyltransf_10  28 egealllvaeeggkiv..Gvi.el.rdgshisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkav 109
                      + +  +l++ + g+ v  G i el  +++++ +++V+p++rg+Gi+++Ll a+e+ a ++g+++ +l+  +   +a+++Y ++G+ ++
       KIR60561.1  39 HDDIRYLAVVDAGRAVacGGIqELdPRTGELKRMYVRPAFRGRGIARQLLAALEDLAFQQGYAElRLETGSYLpAAIGLYTSCGYAPI 126
                      55667788888888886744458988888***************************99*****99999999878***********875 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.3e-08   4.2e-05      18      78 ..      63     124 ..      46     131 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.3e-08
                 E-TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EE.EEEETT-HHHHHHHHHHT-E CS
        FR47  18 rkdggelgalqvlpehrrrGlgsrlvkalakeiaergktvl.lvvvasNtpsirlyeklGfe 78 
                  +  gel  ++v+p +r+rG +++l +al     ++g+  l l ++    ++i ly++ G+ 
  KIR60561.1  63 DPRTGELKRMYVRPAFRGRGIARQLLAALEDLAFQQGYAELrLETGSYLPAAIGLYTSCGYA 124
                 4567*************************999999998655156667777889999999986 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   3.2e-08   5.7e-05      20     137 ..       9     123 ..       4     124 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3.2e-08
  Acetyltransf_3  20 sdpevmry.lpepltleeaeewlerawaeeseeegygwaivlkdtgviGsvglrdleeedeeaelg.ymlapsfwgkGyateavralleyafeel 112
                     +dpe+ +  + ++++l ea+  l+   +   ++++  ++ v+ +++++ + g+++l++++  +el  ++++p+f+g+G+a+  ++al ++af++ 
      KIR60561.1   9 TDPEIATLvVAQQRELREADGGLDGQVTV--THDDIRYLAVVDAGRAVACGGIQELDPRT--GELKrMYVRPAFRGRGIARQLLAALEDLAFQQG 99 
                     68887776577788888888888866443..3566554443455547***********97..89994556788*******************888 PP

  Acetyltransf_3 113 glerlvavidkeNeaSirvleklGf 137
                      + +l+ ++    +a i +++++G+
      KIR60561.1 100 -YAELRLETGSYLPAAIGLYTSCGY 123
                     .888999999998888888888885 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.3e-07   0.00078      21      58 ..      63     100 ..      43     102 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.3e-07
  Acetyltransf_CG  21 kegvldfthTeVpeelrGkGiAkkLvkaalddareegl 58 
                      +  + ++   +V +++rG+GiA++L  a  d a ++g+
       KIR60561.1  63 DPRTGELKRMYVRPAFRGRGIARQLLAALEDLAFQQGY 100
                      5556688999*****************99998888875 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     6e-06     0.011      52     134 ..      45     123 ..      20     127 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6e-06
  Acetyltransf_4  52 flvaesdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkalGF 134
                     + v +++r v+   ++++++r  +++ +  +y+ + + + +g++r+l++ale+ + +q++ +l  e+ s   ++i ++ + G+
      KIR60561.1  45 LAVVDAGRAVACGGIQELDPR--TGE-LKRMYV-RPAFRGRGIARQLLAALEDLAFQQGYAELRLETGSYLPAAIGLYTSCGY 123
                     456779999999999999993..332.335788.588999***************************9999999999999999 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.3e-05     0.042       8      29 ..      70      91 ..      69     104 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
  Acetyltransf_13  8 sriWvssshRrkgiAtkLldaa 29
                     +r++v +++R +giA++Ll a+
       KIR60561.1 70 KRMYVRPAFRGRGIARQLLAAL 91
                     69*****************876 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.5e-05     0.099      57      89 ..      62      94 ..      50     126 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.5e-05
        PanZ 57 ledkeaelsdlcVRevTRrRGVgsyLleearrq 89
                l+ +++el+ + VR   R RG+++ Ll    + 
  KIR60561.1 62 LDPRTGELKRMYVRPAFRGRGIARQLLAALEDL 94
                455789********************9766554 PP

>> Acetyltransf_15  Putative acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.8e-05     0.086      77      96 ..      71      90 ..      64     103 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.8e-05
  Acetyltransf_15 77 tlyvsekyrgkGlakklLee 96
                      +yv + +rg+G+a++lL  
       KIR60561.1 71 RMYVRPAFRGRGIARQLLAA 90
                     79***************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1026.96
//
Query:       KIR60562.1  [L=159]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-40  136.5  19.8    6.3e-40  136.3  19.8    1.0  1  DUF4383   Domain of unknown function (DUF4383)


Domain annotation for each model (and alignments):
>> DUF4383  Domain of unknown function (DUF4383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3  19.8   3.5e-44   6.3e-40       1     123 [.      13     140 ..      13     141 .. 0.97

  Alignments for each domain:
  == domain 1  score: 136.3 bits;  conditional E-value: 3.5e-44
     DUF4383   1 rvlallvGlvfllvGvlGfiPgltseydelalageasgakllglfqvnllhnlvhllvGvlglaaarsasgarlyllllgvvylllailgllvldkt.. 97 
                 +v+a++v+++fll+GvlGf+Pg+t+ yd+l++ag++sga+llglfqv++lhn++hl++G++gla+ars +garl+l ++g++yl l+++gl+v + +  
  KIR60562.1  13 QVAAVAVAALFLLLGVLGFVPGITTGYDDLTFAGHHSGAELLGLFQVSVLHNALHLVFGLAGLALARSVAGARLFLAGGGALYLGLCLYGLFV-RFAgn 110
                 899*****************************************************************************************9.44457 PP

     DUF4383  98 ....anllplngadnwlhlllalvllalgl 123
                     an++plngad++lhlll+l++lalgl
  KIR60562.1 111 ehgaANFIPLNGADDFLHLLLGLGMLALGL 140
                 79**************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1127.41
//
Query:       KIR60563.1  [L=261]
Description: hypothetical protein TK50_21790 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0011   19.5  11.4       0.58   10.8   3.9    2.8  2  DUF883    Bacterial protein of unknown function (DUF883)
  ------ inclusion threshold ------
      0.014   14.4   0.0      0.017   14.1   0.0    1.2  1  DUF3987   Protein of unknown function (DUF3987)


Domain annotation for each model (and alignments):
>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   3.9   6.4e-05      0.58      10      62 ..      22      74 ..      14      81 .. 0.88
   2 !    9.4   9.0   0.00018       1.6       8      88 ..      42     158 ..      38     162 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.4e-05
      DUF883 10 lladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaa 62
                ++++++++ +eaa  +g  a+++Re+ +e + +a  ++r+++ +++++    a
  KIR60563.1 22 VRDQARQVGSEAAHAGGAVAQTAREQGREVVGEAARQARNLYGEARDQLAGQA 74
                788999999*************************************9987655 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00018
      DUF883   8 eslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddy....................................Vr 70 
                 ++++++ +e++ eaa++a++ + e+R++l  ++ + + r++   +++a++++++a++  +                                     +r
  KIR60563.1  42 QTAREQGREVVGEAARQARNLYGEARDQLAGQAGEQQRRAAGGLRSLADEMRAMAQHSGQSgpvtelahqaaervngvagwleerqpgdiltevkdyAR 140
                 7889999************************************************99887777666666666666666666666666666666666666 PP

      DUF883  71 enPwqavGiAagvGlllG 88 
                 +nP + +  Aa++G+l+G
  KIR60563.1 141 RNPGTFLVGAAVLGVLAG 158
                 666666666666666666 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.9e-06     0.017     250     332 ..      78     158 ..      42     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.9e-06
     DUF3987 250 leayearfrellaep.elellegelepitlrlsdeAkerfneffnelesrlrpggdledirdwasKlagnvaRiAgilhllred 332
                 +++++  +r+l++e+ + ++++g  + ++ +l ++A+er+n ++  le+r+ pg+ l +++d+a + +g+++  A++l +l   
  KIR60563.1  78 QRRAAGGLRSLADEMrAMAQHSG-QSGPVTELAHQAAERVNGVAGWLEERQ-PGDILTEVKDYARRNPGTFLVGAAVLGVLA-G 158
                 45777788999999744455555.69999*********************7.8888888*******************9994.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1737.97
//
Query:       KIR60564.1  [L=154]
Description: hypothetical protein TK50_21795 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-29  102.4   4.7    1.6e-29  102.2   4.7    1.0  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
  ------ inclusion threshold ------
      0.018   15.2   0.2      0.026   14.8   0.2    1.2  1  VirB3            Type IV secretory pathway, VirB3-like protei
       0.14   12.1   1.0       0.14   12.0   0.1    1.5  2  MtrG             Tetrahydromethanopterin S-methyltransferase,
       0.17   12.0   0.0        0.3   11.2   0.0    1.5  1  DUF2615          Protein of unknown function (DUF2615)
       0.18   12.0   0.0       0.28   11.4   0.0    1.3  1  DUF4330          Domain of unknown function (DUF4330)
       0.19   10.4   0.0       0.22   10.2   0.0    1.0  1  DUF2207          Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   4.7   5.3e-33   1.6e-29       1     113 []      32     146 ..      32     146 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 5.3e-33
  Phage_holin_3_6   1 gelvrrltaqlssLvrteleLakaElkeeakragsgagllgaagvlallalllllvalalala.a..lwlaalivaavllvlagvlalvglkkl 91 
                      gel+r+++++ls+L+r+e+eLakaE+++e+++ag++agl+g+ag+ +++ +l+l++al+++l+ +  + +aaliva+++ ++a+vl  +++k +
       KIR60564.1  32 GELLRQVSTDLSTLMRQEVELAKAEIRQEGRKAGKAAGLFGGAGFGGYMVALFLSIALWAGLSnVldAGWAALIVAVLWGAIAAVLYSMAKKHA 125
                      79************************************************************998***************************** PP

  Phage_holin_3_6  92 kkakplpertieelkedvaalk 113
                      +++++ +++t +++++  +alk
       KIR60564.1 126 QRVRG-LRQTNDSVQRIPDALK 146
                      **999.9**********99997 PP

>> VirB3  Type IV secretory pathway, VirB3-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.2   8.6e-06     0.026      17      67 ..      73     131 ..      63     140 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.6e-06
       VirB3  17 Gvplelvllnllvsvilfl........vglslwillllvplhlvlrliakrDpqmfrvl 67 
                 G+ +   +++l++s+ l+          + +l +++l+ ++ +vl+ +ak++ q++r l
  KIR60564.1  73 GAGFGGYMVALFLSIALWAglsnvldaGWAALIVAVLWGAIAAVLYSMAKKHAQRVRGL 131
                 5555556777777777777888889987888888889999**************99866 PP

>> MtrG  Tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   4.8e-05      0.14      22      63 ..      46      86 ..      35      87 .. 0.86
   2 ?   -3.1   0.1       2.5   7.4e+03      47      57 ..     108     118 ..     106     121 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.8e-05
        MtrG 22 ieekvefvnsEiaqriGkkvGRdiGilYGlviGliillvyil 63
                + + ve +++Ei q  G+k G+  G+  G+ +G +++ ++++
  KIR60564.1 46 MRQEVELAKAEIRQE-GRKAGKAAGLFGGAGFGGYMVALFLS 86
                4578*******9885.*****************999999876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.5
        MtrG  47 ilYGlviGlii 57 
                 +l+G+++ ++ 
  KIR60564.1 108 VLWGAIAAVLY 118
                 77888776654 PP

>> DUF2615  Protein of unknown function (DUF2615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0001       0.3      51      90 ..      98     137 ..      75     151 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
     DUF2615  51 eggsslfliallwlvvaavlfllrPsslrnasaknkpsrk 90 
                 + g   +++a+lw ++aavl+ +  + +++ +  ++ +++
  KIR60564.1  98 DAGWAALIVAVLWGAIAAVLYSMAKKHAQRVRGLRQTNDS 137
                 56677899***************99877776444444433 PP

>> DUF4330  Domain of unknown function (DUF4330)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.3e-05      0.28      12      45 ..      92     125 ..      90     141 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.3e-05
     DUF4330  12 gkvnilDllailvilavivgiflkpgtsgsvaqa 45 
                 g  n+lD++ +++i+av++g ++ + +s + ++a
  KIR60564.1  92 GLSNVLDAGWAALIVAVLWGAIAAVLYSMAKKHA 125
                 5569*******************99999333332 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   7.4e-05      0.22     364     436 ..      46     127 ..      19     136 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.4e-05
     DUF2207 364 vkk...kergyfdkkgkkklkklsalglgliilglilillallllvll......lvfllilllillliaiivlllfsrllgr 436
                 +++    ++  ++++g+k  k  +++g +++  ++++++l+++l ++l         +li++++++ ia++++ ++++  +r
  KIR60564.1  46 MRQeveLAKAEIRQEGRKAGKAAGLFGGAGFGGYMVALFLSIALWAGLsnvldaGWAALIVAVLWGAIAAVLYSMAKKHAQR 127
                 3334443555666676666666666666666666666666655544448877766666666666666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       984  (0.0548832); expected 358.6 (0.02)
Passed bias filter:                      676  (0.0377043); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1149.47
//
Query:       KIR60565.1  [L=216]
Description: hypothetical protein TK50_21800 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-18   64.5   1.9    7.9e-18   64.5   1.9    5.0  5  DUF3618          Protein of unknown function (DUF3618)
    2.6e-09   37.3  17.7    8.8e-05   22.5   9.7    2.2  2  Apolipoprotein   Apolipoprotein A1/A4/E domain
    9.9e-08   32.5  24.1    0.00051   20.6   5.9    3.9  3  DUF883           Bacterial protein of unknown function (DUF88
     0.0041   17.6  12.1       0.19   12.3   0.3    3.9  3  YtxH             YtxH-like protein
  ------ inclusion threshold ------
      0.015   14.9   0.0       0.02   14.5   0.0    1.1  1  Gpr1_Fun34_YaaH  GPR1/FUN34/yaaH family
      0.019   15.1   4.2       0.15   12.2   0.8    2.9  2  ApoLp-III        Apolipophorin-III precursor (apoLp-III)
      0.059   12.4   2.1      0.083   11.9   2.1    1.3  1  FAM199X          Protein family FAM199X
        0.1   12.8   7.9        1.3    9.2   2.9    2.6  2  Synuclein        Synuclein
       0.31   11.0  12.2       0.75    9.8   4.2    3.5  2  Phasin           Poly(hydroxyalcanoate) granule associated pr
       0.32   11.2  10.1       0.18   12.1   0.5    3.6  3  WXG100           Proteins of 100 residues with WXG
          1    9.4   9.5        2.8    7.9   2.4    2.7  2  Chlorosome_CsmC  Chlorosome envelope protein C
        3.2    6.7   4.8       0.31   10.1   0.3    1.5  2  Atg14            Vacuolar sorting 38 and autophagy-related su
        7.8    6.3   9.1          6    6.7   6.8    2.0  2  CAP160           CAP160 repeat


Domain annotation for each model (and alignments):
>> DUF3618  Protein of unknown function (DUF3618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   1.9   5.7e-21   7.9e-18       2      46 ..       3      47 ..       2      48 .. 0.96
   2 ?   -0.2   1.5      0.92   1.3e+03      23      43 ..      70      91 ..      66     100 .. 0.64
   3 ?    0.5   1.0      0.53   7.3e+02      28      45 ..     141     158 ..     134     160 .. 0.62
   4 ?    1.6   1.4      0.24   3.3e+02      30      44 ..     180     194 ..     164     197 .. 0.84
   5 ?   -0.2   0.1      0.89   1.2e+03      30      38 ..     202     210 ..     196     215 .. 0.51

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 5.7e-21
     DUF3618  2 rdpeeIerdIertRaeLaeTvdeLaaradPkrladrakarvkarv 46
                +dp++I+r+Ie+tR+ L+ +vd+La +++P+r++d++k+r++ ++
  KIR60565.1  3 TDPDQIRREIEATRNSLSTDVDALAYKVSPGRIVDDRKQRARNAL 47
                7*****************************************987 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.92
     DUF3618 23 deLaara.dPkrladrakarvk 43
                ++ a+ra + +  + ++++++ 
  KIR60565.1 70 HAVADRAsSAASTVSDKAHSAA 91
                5666666666666666666665 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.53
     DUF3618  28 radPkrladrakarvkar 45 
                  a ++++a   +++vk++
  KIR60565.1 141 AAQVRERAGAHAGAVKEK 158
                 455666666666666666 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.24
     DUF3618  30 dPkrladrakarvka 44 
                 ++k+ a++a+++v++
  KIR60565.1 180 SVKATAQDAVHAVRD 194
                 789999999999997 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.89
     DUF3618  30 dPkrladra 38 
                 d+k  a++ 
  KIR60565.1 202 DVKDHAQQS 210
                 455555555 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   1.0   4.8e-07   0.00066      85     184 ..       7     108 ..       5     116 .. 0.81
   2 !   22.5   9.7   6.4e-08   8.8e-05      98     173 ..     138     213 ..     132     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.8e-07
                     HHHHCHHCCHHCHCCHCHHHHHHHHHH..HHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS--XX CS
  Apolipoprotein  85 rlaadaeelqeqlavyaeelrerlerh..vealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelrekleeqaeelrerlean 177
                     ++++++e+ +++l++  + l  +++ +  v++ k+r    ++++r+k+   + + + s   +a +v +r+ss ++ +++k+  +a+ + + ++++
      KIR60565.1   7 QIRREIEATRNSLSTDVDALAYKVSPGriVDDRKQRARNALQNVRDKVMGTASDYGHSTGHAAHAVADRASSAASTVSDKAHSAASTVGDAAQRA 101
                     67788888888888888888888876666888888888888888888888888888888888999999999999999999999888888888888 PP

                     XXXXXXX CS
  Apolipoprotein 178 leelkaq 184
                      + l+++
      KIR60565.1 102 PQVLREK 108
                     7777765 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 6.4e-08
                     CCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS CS
  Apolipoprotein  98 avyaeelrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelrekleeqaeelrer 173
                     +++a+++rer+ +h++a+k++l++ + elr++l+e ++  +es+++ a+    ++++  + + + +++ a++ r +
      KIR60565.1 138 QQVAAQVRERAGAHAGAVKEKLGEVAGELREELREPAQHAGESVKATAQDAVHAVRDDTRSAAHDVKDHAQQSRGQ 213
                     68999*******************************************9988899999999999999999999876 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   5.9   3.7e-07   0.00051       3      91 ..      43     131 ..      10     136 .. 0.95
   2 !   14.4   2.8   3.2e-05     0.045      22      71 ..     134     183 ..     132     185 .. 0.90
   3 !    8.4   3.6    0.0024       3.3      27      61 ..     176     210 ..     174     215 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.7e-07
      DUF883   3 leaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVrenPwqavGiAagvGlllGlLl 91 
                 +++ l+++++++   +++ + ++g+ a+++ +r++++++++ ++++ a+ +v + a++a +  ++  + nP++a  iA gvG+l+  L+
  KIR60565.1  43 ARNALQNVRDKVMGTASDYGHSTGHAAHAVADRASSAASTVSDKAHSAASTVGDAAQRAPQVLREKSEGNPLAAGLIAFGVGMLVSSLI 131
                 56678999999**************************************************************************9987 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 3.2e-05
      DUF883  22 adeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVre 71 
                 +++ ++ a+++Rer+ +++ +++e+l +++ +++e+ +e a++a + V++
  KIR60565.1 134 SRREQQVAAQVRERAGAHAGAVKEKLGEVAGELREELREPAQHAGESVKA 183
                 567788999**********************************9998875 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0024
      DUF883  27 eeaeelRerleerlerarerlrdaeeavaerakea 61 
                 +  e++++ ++++++++r+ +r a+++v+++a++ 
  KIR60565.1 176 HAGESVKATAQDAVHAVRDDTRSAAHDVKDHAQQS 210
                 56678888889999999999998888888888875 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.9    0.0017       2.3      25      70 ..      49      94 ..       8     110 .. 0.69
   2 !   10.9   1.6   0.00036      0.49      25      71 ..     143     189 ..     113     193 .. 0.90
   3 !   12.3   0.3   0.00014      0.19      24      65 ..     168     209 ..     163     215 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0017
        YtxH 25 etRkdlkekaddlkekakelleeakekakekaedlkekvkekadel 70
                ++R+++  +a+d+  ++  +++ ++++a++ a+ +++k+ + a+ +
  KIR60565.1 49 NVRDKVMGTASDYGHSTGHAAHAVADRASSAASTVSDKAHSAASTV 94
                3455566666666666666666665555555555555555555444 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00036
        YtxH  25 etRkdlkekaddlkekakelleeakekakekaedlkekvkekadelk 71 
                 ++R+++   a ++kek+ e++ e++e  +e a+ + e+vk +a++++
  KIR60565.1 143 QVRERAGAHAGAVKEKLGEVAGELREELREPAQHAGESVKATAQDAV 189
                 689999999********************************999876 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00014
        YtxH  24 ketRkdlkekaddlkekakelleeakekakekaedlkekvke 65 
                 +e+R+ ++++ + +k  a+++++ +++ +++ a d+k+ +++
  KIR60565.1 168 EELREPAQHAGESVKATAQDAVHAVRDDTRSAAHDVKDHAQQ 209
                 577777777788888888888888877777777777777664 PP

>> Gpr1_Fun34_YaaH  GPR1/FUN34/yaaH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.5e-05      0.02      13      48 ..     106     141 ..      95     157 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
  Gpr1_Fun34_YaaH  13 pkrkfaNPaPlgllafalttfvlslvnlgargitep 48 
                       +++ +NP + gl+af++ ++v sl+ +  r+ ++ 
       KIR60565.1 106 REKSEGNPLAAGLIAFGVGMLVSSLIPASRREQQVA 141
                      566789********************9988876655 PP

>> ApoLp-III  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.075     1e+02      57      76 ..      44      63 ..       4     110 .. 0.50
   2 ?   12.2   0.8   0.00011      0.15      63     118 ..     155     211 ..     134     215 .. 0.66

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.075
   ApoLp-III 57 eealkevkkkieetadklse 76
                 +al++v++k+  ta +   
  KIR60565.1 44 RNALQNVRDKVMGTASDYGH 63
                33333333333333333333 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00011
   ApoLp-III  63 vkkkieetadklseenPevkkka.qelqekvQsgvqslvkesqklaeslkensqeak 118
                 vk+k+ e+a +l+ee  e ++ a +  +++ Q++v ++  ++  +a ++k+++q+  
  KIR60565.1 155 VKEKLGEVAGELREELREPAQHAgESVKATAQDAVHAVRDDTRSAAHDVKDHAQQSR 211
                 456666666666666555555552557888888899888889999998888888765 PP

>> FAM199X  Protein family FAM199X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.1     6e-05     0.083     179     254 ..      42     113 ..      12     162 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6e-05
     FAM199X 179 qvrnyikehsprqrasstreswkrssyssastsgvsaasssnasmvssassstasvgssaansaanisrahsdsnl 254
                 + rn +++   r +   t  ++  s+    ++  v+  +ss+as vs  + s+as+  +aa+ a ++ r +s++n 
  KIR60565.1  42 RARNALQN--VRDKVMGTASDYGHSTGH--AAHAVADRASSAASTVSDKAHSAASTVGDAAQRAPQVLREKSEGNP 113
                 44444443..233333444444444333..345688899*********9999999999999***********9984 PP

>> Synuclein  Synuclein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.9   0.00097       1.3      46     107 ..      74     138 ..      35     169 .. 0.65
   2 ?    5.8   0.9     0.011        15      30      77 ..     167     214 ..     146     216 .] 0.78

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00097
   Synuclein  46 egvvqsvttvaektkeqasvvgeavvtsvnavaektve...gaeniaaatGlvkkedlekdlpee 107
                 ++   + +tv +k+++ as+vg+a++ + + + ek+     +a+ ia ++G++ ++ ++ + +e+
  KIR60565.1  74 DRASSAASTVSDKAHSAASTVGDAAQRAPQVLREKSEGnplAAGLIAFGVGMLVSSLIPASRREQ 138
                 44455667777777777777777777766655555543222467777777766666454444333 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.011
   Synuclein  30 AektKeGvlyvGsktkegvvqsvttvaektkeqasvvgeavvtsvnav 77 
                  e  +e   + G+ +k   +++v +v + t++ a  v++++++s  +v
  KIR60565.1 167 REELREPAQHAGESVKATAQDAVHAVRDDTRSAAHDVKDHAQQSRGQV 214
                 55666777788999999999*******************999998776 PP

>> Phasin  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   1.1     0.043        59      57      86 ..      67      96 ..       6     109 .. 0.74
   2 ?    9.8   4.2   0.00054      0.75      27      83 ..     157     213 ..     134     215 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.043
      Phasin 57 ekleevresvkskveevkekaeeqwdklek 86
                +++++v ++++s++++v++ka+++ + +  
  KIR60565.1 67 HAAHAVADRASSAASTVSDKAHSAASTVGD 96
                445555566666666666666655555544 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00054
      Phasin  27 akvqeeGsklfeaLvkeGeklekktkkvaeekleevresvkskveevkekaeeqwdk 83 
                 +k+ e +++l e+L +  +++ ++ k++a++++++vr+ ++s++++vk++a+++  +
  KIR60565.1 157 EKLGEVAGELREELREPAQHAGESVKATAQDAVHAVRDDTRSAAHDVKDHAQQSRGQ 213
                 4777788999999**************************************998665 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.95   1.3e+03      17      37 ..       6      26 ..       1      29 [. 0.69
   2 ?   12.1   0.5   0.00013      0.18      16      80 ..      36     100 ..      33     103 .. 0.96
   3 ?    2.6   0.2      0.12   1.6e+02       7      27 ..     194     214 ..     188     216 .] 0.88

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.95
                HHHHHHHHHHHHHHHHHHHHC CS
      WXG100 17 qkqaeeledelqrlkaevdal 37
                ++++ e+e+  ++l  +vdal
  KIR60565.1  6 DQIRREIEATRNSLSTDVDAL 26
                456667777777777777776 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00013
                 HHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  16 fqkqaeeledelqrlkaevdalqsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaana 80 
                 +++ +++ +++lq+++ +v   +s++  +++ a +a+ ++   aa ++ d+ ++ ++++  aa++
  KIR60565.1  36 VDDRKQRARNALQNVRDKVMGTASDYGHSTGHAAHAVADRASSAASTVSDKAHSAASTVGDAAQR 100
                 67899********************************************************9985 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHHHHH CS
      WXG100   7 eelrqaaarfqkqaeeledel 27 
                 ++ r+aa +++++a++ ++++
  KIR60565.1 194 DDTRSAAHDVKDHAQQSRGQV 214
                 6789************99987 PP

>> Chlorosome_CsmC  Chlorosome envelope protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.4     0.002       2.8      88     126 ..      68     106 ..      17     112 .. 0.68
   2 ?    5.3   0.7     0.013        18      85     120 ..     174     209 ..     113     215 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.002
  Chlorosome_CsmC  88 vsraaGelysdavknvenvtdnaakavGdvgvsasevvk 126
                      +++a  +  s a+ +v + +++aa +vGd++  a +v++
       KIR60565.1  68 AAHAVADRASSAASTVSDKAHSAASTVGDAAQRAPQVLR 106
                      333334445667788888888888888888888887776 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.013
  Chlorosome_CsmC  85 vkdvsraaGelysdavknvenvtdnaakavGdvgvs 120
                       + ++ +     +dav++v + t +aa+ v d + +
       KIR60565.1 174 AQHAGESVKATAQDAVHAVRDDTRSAAHDVKDHAQQ 209
                      334444444455666777777777777666666555 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00023      0.31      90     161 ..       5      83 ..       1     112 [. 0.70
   2 ?   -2.4   0.5       1.4   1.9e+03     111     141 ..     166     197 ..     133     213 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00023
       Atg14  90 lsqlkkeieekkkklaklsdklk..........kRrsdleslqneleerrkkqiaklqdaikrieqklsslssktlesrssl 161
                  +q ++eie++++ l++  d+l+          +R+++   ++n l++ r k + + +d+ + + +  +++ +   ++ s+ 
  KIR60565.1   5 PDQIRREIEATRNSLSTDVDALAykvspgrivdDRKQR---ARNALQNVRDKVMGTASDYGHSTGHAAHAVADRASSAASTV 83 
                 5899*******************777777777666666...67777777777777777777777666666666555543322 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
       Atg14 111 lk.kRrsdleslqneleerrkkqiaklqdaik 141
                 l  + r+ ++ + +++++  ++ +  + d+++
  KIR60565.1 166 LReELREPAQHAGESVKATAQDAVHAVRDDTR 197
                 22333444444444444444444444444433 PP

>> CAP160  CAP160 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.4      0.12   1.6e+02       4      15 ..      68      79 ..      66      79 .. 0.88
   2 ?    6.7   6.8    0.0044         6       2      18 ..      77      93 ..      76      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.12
      CAP160  4 ATSaiaDKAvaA 15
                A+ a+aD A +A
  KIR60565.1 68 AAHAVADRASSA 79
                778******998 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0044
      CAP160  2 SSATSaiaDKAvaAKNv 18
                SSA+S + DKA +A  +
  KIR60565.1 77 SSAASTVSDKAHSAAST 93
                9************9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       941  (0.0524848); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 1657.59
//
Query:       KIR60566.1  [L=415]
Description: cytochrome P450 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-12   47.4   0.1    1.8e-12   46.8   0.1    1.2  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.1     1e-16   1.8e-12     325     439 ..     275     388 ..     259     407 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 1e-16
                 HHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGG....S-TTHHHHH CS
        p450 325 davikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpR....nCiGerlAr 419
                 + +++E+ R++p+ p     +v +    +g+++p+G +v++ ly++++ ++++p+Pe+F+peRF   +g    +++a +P G G +     C Ge + +
  KIR60566.1 275 ECFVQEVRRYYPFFP-VAAARVRRSFDWQGHHFPQGRRVLLDLYGTNHHEALWPEPERFRPERFAGWRG----DPYALVPQGGGEHltghRCAGEWITI 368
                 56799**********.555668999******************************************87....7**********853333799998887 PP

                 HHHHHHHHHHHHHEEEEEST CS
        p450 420 melklflatlLqnFevelqp 439
                   lk ++++l  + + e++p
  KIR60566.1 369 ELLKRAVTNLTTTMRYEVPP 388
                 77777777776666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2771.85
//
Query:       KIR60567.1  [L=133]
Description: hypothetical protein TK50_21810 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       170  (0.00948185); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1042.55
//
Query:       KIR60568.1  [L=72]
Description: hypothetical protein TK50_21815 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-14   52.3   0.2    5.2e-14   52.0   0.2    1.1  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.2   2.9e-18   5.2e-14       2      53 ..      15      64 ..      14      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 2.9e-18
      DUF397  2 tWrKSsySgggggnCVEvaalpdavavRDSkdpdgpvLtftpaewaaFlagv 53
                +W++    +++g   VEva+++d +++R+S +pdgpvL+ft+aew+aF+ag+
  KIR60568.1 15 VWQRAEGDTSEG--AVEVAFVDDLIGMRNSAEPDGPVLVFTQAEWDAFVAGA 64
                799999888887..5********677************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       188  (0.0104858); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 545.54
//
Query:       KIR60569.1  [L=838]
Description: aminopeptidase N [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-54  185.1   0.0    1.7e-54  184.7   0.0    1.1  1  Peptidase_M1    Peptidase family M1 domain
    2.3e-44  152.3   1.1    2.3e-44  152.3   1.1    1.8  2  ERAP1_C         ERAP1-like C-terminal domain
     0.0023   18.2   0.0     0.0075   16.5   0.0    1.7  2  Peptidase_M1_N  Peptidase M1 N-terminal domain
  ------ inclusion threshold ------
      0.043   13.7   0.0      0.095   12.6   0.0    1.5  1  Peptidase_M78   IrrE N-terminal-like domain


Domain annotation for each model (and alignments):
>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.7   0.0   3.8e-58   1.7e-54       3     218 .]     222     436 ..     220     436 .. 0.96

  Alignments for each domain:
  == domain 1  score: 184.7 bits;  conditional E-value: 3.8e-58
                   HHHHHHHHHHHHHHHTS--SSSEEEEEEESSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHHHHH CS
  Peptidase_M1   3 levtkkllefleeyfkvpYplpkldlvalpdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnEGfa 99 
                   l vt+++l+ ++e f   Yp+ k+d+ ++p+f+agAMEn+gl+t+r+ l+     + ++++++  a++iaHE+aH+WfG+lVtm+wWddlwLnE+fa
    KIR60569.1 222 LTVTRQCLDRFHELFAERYPFGKYDQAFVPEFNAGAMENPGLVTFRDDLVFRS--AVTDTQRELRATTIAHEMAHMWFGDLVTMRWWDDLWLNESFA 316
                   56899******************************************998888..67777889999******************************* PP

                   HHHHHHHHHHHSCCCHCHHHHHHHCHHHHHHHHTSTTHHHSS.GG-GSHHHHHHTSSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHCTTEEE- CS
  Peptidase_M1 100 tyleylildklepewevseqllleeveealsedaldeshpit.qevekpseidevFdsiaYeKGasllrmlekllgeevFqkglksYlkefkyknae 195
                   +yl  +++ ++   +  ++++ l++     + d+  ++hp+  +ev +++     Fd i+Y+KGas+lr l ++lg++ F  gl++ ++ ++++na+
    KIR60569.1 317 EYLGTRVTAEATRFAGAWTTFALRRKGWGYAADQRPSTHPVApEEVADAALALLNFDGISYAKGASVLRQLVAWLGDDAFLAGLNAHFAAHRFGNAT 413
                   **********9998889*************************77***************************************************** PP

                   HHHHHHHHHHCCCSCHHTHHHHH CS
  Peptidase_M1 196 tedlwdaleealnkdisevmdtw 218
                     dl+ al++a++ d+s   ++w
    KIR60569.1 414 LADLLGALSTAAGRDLSGWAERW 436
                   ****************9999998 PP

>> ERAP1_C  ERAP1-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2      0.63   2.8e+03     133     187 ..     385     437 ..     364     463 .. 0.67
   2 !  152.3   1.1     5e-48   2.3e-44       1     315 []     518     825 ..     518     825 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.63
                 HHHH.HTT-HHHHHHHHHHHHHHHCSTT-S-HHHHHHHHHHHHHHS.-HHHHHHHHH CS
     ERAP1_C 133 saac.aagdpevveearklfkawlegddlippdlrwavycalaang.geaewdalle 187
                 ++++  +gd++ ++ +++ f+a++ g+ +  +dl +a+ +a+   g + ++w + + 
  KIR60569.1 385 RQLVaWLGDDAFLAGLNAHFAAHRFGN-ATLADLLGALSTAA---GrDLSGWAERWL 437
                 444335577777777777777776552.36666666666666...335666666663 PP

  == domain 2  score: 152.3 bits;  conditional E-value: 5e-48
                 -EEESGGG-SSSEEEE-HHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHGGG..GGGG--SHHHHHHHHHHHHHHHHHHTTSTTHHH CS
     ERAP1_C   1 lvllNdddtGyyrVnYdeeslaalleqllskklspldRaglisdafalaragelsaadlldlll.gylanEtdylvwsqalsqlatlksllsadplyaa 98 
                 l+l+N++d++++++++d++s +a+    l+++ +pl+Ra+l++ a + a +ge ++a+l++l++ ++ ++Et+ ++++ +l+ ++ l++++  dpl  a
  KIR60569.1 518 LLLPNAGDLTFAKIRLDPASVDAVPL-VLPTLADPLARALLWGEALDAATDGERPVAALVELVAaAL-PGETEVIIVEDVLRTVRPLVDRY-LDPL--A 611
                 579*********************88.88***********************************566.***********************.8884..8 PP

                 HHHHHHHHHHHHHHHHHH.T.TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHCSTT....-.S-HHHHHHHHHHHHHHS..-HHHHHHHHHHH CS
     ERAP1_C  99 lkaflrklleplaeklgw.epgeshldaqlrslllsaacaagdpevveearklfkawlegdd....l.ippdlrwavycalaang..geaewdallery 189
                 ++a l++l+ +  + l++ epg     +ql   + +a+  a+      + ++l+++wl+gd+    l ++++lrwa++ +l+  g  geae+ a+ +  
  KIR60569.1 612 RDAALLRLAGAGQRLLAAaEPG---GSRQLA--AARALIGAS------NDADLLAGWLAGDGvpagLaVDAELRWALLGRLVVLGaaGEAEIAAERAA- 698
                 8888999999999999875788...666666..334443222......23579999999877889845**************99989********999. PP

                 HC-SSHHHHHHHHHHHCC-S-HHHHHHHHHHCTTT..S-GGGHHHHHHHH.HSTTHHHHHH.HHHHHCHCCHHHHTS..STSCHHHHHHHHHTT--.SH CS
     ERAP1_C 190 kdtsapsekeaalralaatpdpellerllnfvlesdevrnqdlrallaglannpegrellw.efvkenwdalakrws..ggeildrivkgllpgft.se 284
                  d+sa ++ e+a+r++aa pdp++++++++ v+ + e++n  ++a+++g+ + ++ + +l  ++v+++++++ +  +  +  ++d++   ++p+++  +
  KIR60569.1 699 -DPSA-TGAERAARCRAALPDPAAKAAAWEIVVRNTELSNRLVEAAAQGF-W-HPEQAELTgPYVERYFADMPAAARrrTPWVADQVAADAYPRYAvAQ 793
                 .****.**************************9899**************.5.555555555**********9988643567**************778 PP

                 HHHHHHHHHHCHTT.--GGGHHHHHHHHHHHH CS
     ERAP1_C 285 eelaeieaffadkd.tpglrrtlkqaletvrr 315
                  + + + a++a +d tpglrr++ +a +++rr
  KIR60569.1 794 PTRELAAALLARDDvTPGLRRVVTDADDDLRR 825
                 888888888888866*************9987 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.59   2.7e+03       3      29 ..      19      45 ..      18      54 .. 0.84
   2 !   16.5   0.0   1.7e-06    0.0075      95     186 .]      97     182 ..      80     182 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.59
                    EEEEEEEEEETTTTEEEEEEEEEEEES CS
  Peptidase_M1_N  3 ehYdldlkidlkektfkGsvtitlqlk 29
                    e+Y +dl++   e+ f+ ++ti+++++
      KIR60569.1 19 ESYHVDLDLTAGEERFRSHATIRFRAT 45
                    579999999999**********99887 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.7e-06
                     E-BSSSSEEEEEEEEE..TSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTSEEEESSECCCEEEETTCEEEEEEEEEESBEGGG CS
  Peptidase_M1_N  95 elndklaGlykstYtd..kgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkeetalSnmpeeeseklengqkiteFeqtpkmstYL 186
                      ++++ +Gl +  ++d  +ge+  ++++ ++   A ++f  fD+P+ KA  ++ ++ap + t+ +n+   ++ + +     +eF+ t +   YL
      KIR60569.1  97 AYSNTGEGLHR--FVDpaDGETYLYAMSFLD--NAQRIFAAFDQPELKAPVRLAVTAPPQWTVAANGALAATPRPG----RWEFAPTAPLAPYL 182
                     55666667766..445435555444444443..6999*****************************9988554443....26777777776665 PP

>> Peptidase_M78  IrrE N-terminal-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.1e-05     0.095      42      84 ..     284     333 ..     277     335 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
  Peptidase_M78  42 qrftlaHElgHlllhherdkf.......reegdskaqerlereanafAae 84 
                    ++ t+aHE +H+++++   ++       +e +      r   ea++fA++
     KIR60569.1 284 RATTIAHEMAHMWFGDLVTMRwwddlwlNESFAEYLGTRVTAEATRFAGA 333
                    788***************999*******9******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 6102.13
//
Query:       KIR60570.1  [L=198]
Description: nicotinate-nucleotide adenylyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-32  112.5   0.0    2.1e-32  112.3   0.0    1.0  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   0.0   1.2e-36   2.1e-32       1     143 []      10     171 ..      10     171 .. 0.97

  Alignments for each domain:
  == domain 1  score: 112.3 bits;  conditional E-value: 1.2e-36
                      EEEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHH...........HHHHHTTTT CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkkkplasaeeRlemlelakevdevisvdpweltr...........evlkklkpd 83 
                      ++gGtFDpiH+GHl  + ++++ +++d +v+vp+ +p +k  +p+++ae+R+ m+  a+ +++ + v+  +++r           ++  +++p+
       KIR60570.1  10 IMGGTFDPIHHGHLVAASEVADRFGLDEVVFVPTGQPWQKADQPVTPAEDRYLMTVIATASNPRFQVSRVDIDRggptytvdtlrDLHAEYGPK 103
                      689******************************************************************************9999999999999 PP

                      .EEEEEEEHHHHHHHHCHHHHHHHHHHHHHEEEEEE.......HTTCEEEEEEECCTTTCSHHHHHHH CS
  CTP_transf_like  84 .klylvigadvledfsewkeleeilgnvklvvvsrp.......ekqanvllkaekrtngiSstkirer 143
                       +ly++ gad+le + +wk+l+ei++  ++++v rp       + +a  + + + +   iSst++r+r
       KIR60570.1 104 vQLYFITGADALERILSWKDLDEIFALAHFIGVTRPgfeltdkHVPADTVSLVQVPAMAISSTDCRAR 171
                      ****************************************9988888888****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1513.31
//
Query:       KIR60571.1  [L=136]
Description: Iojap-like protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-22   79.3   0.1    2.6e-22   79.1   0.1    1.1  1  RsfS      Ribosomal silencing factor during starvation
  ------ inclusion threshold ------
       0.19   11.5   0.0       0.27   11.0   0.0    1.3  1  PAZ       PAZ domain


Domain annotation for each model (and alignments):
>> RsfS  Ribosomal silencing factor during starvation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.1   2.9e-26   2.6e-22       3      99 .]      14     110 ..      12     110 .. 0.92

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 2.9e-26
                 HHHHHHHTT-EEEEEEE-TTTTBSS-SEEEEEEESSHHHHHHHHHHHHHHHHHC...C---EEECBTTS.SEEEEE-SSEEEEEEECCCHHHHHHHHHC CS
        RsfS   3 iaealedkkaedivvidlrekkssladymviatakserhlkalaeelekklkee..aaealsveGlnegddWvlvdlgdvvVhllteeaReeydLEelW 99 
                 +a+a+ dkka+div+id+ + +  ++d +++a a +er++ a+++++e+ l e   +a++++ eG+ +g +Wvl+d+ d+vVh+ + e+Re+y L++lW
  KIR60571.1  14 AAQAAADKKAQDIVIIDVGD-QLAITDAFLLAAAPNERQVLAIVDAIEERLLELpeKAKPVRREGE-RGGRWVLLDYVDMVVHVQHTEEREFYALDRLW 110
                 57899***************.8****************************987743344999****.677***************************** PP

>> PAZ  PAZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.1e-05      0.27      23      62 ..      84     122 ..      56     127 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.1e-05
                 HCCCCTTBEEEETTTTS-CEEEEEEEESS--TTSEECCTT CS
         PAZ  23 aaealkgliVmtwynnrnktyyvadittdlapsstFpdkd 62 
                 +  ++ +++V++++++ ++++y  d +++ +p+  F d+d
  KIR60571.1  84 VLLDYVDMVVHVQHTE-EREFYALDRLWKDCPQIPFVDRD 122
                 556899********77.5999999999*********9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1058.20
//
Query:       KIR60572.1  [L=209]
Description: phosphoglycerate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-54  184.5   5.1    1.8e-54  184.4   5.1    1.0  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.4   5.1     1e-58   1.8e-54       1     192 [.       4     196 ..       4     198 .. 0.95

  Alignments for each domain:
  == domain 1  score: 184.4 bits;  conditional E-value: 1e-58
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH..H CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidaiysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiaeeype 99 
                 l++ RHG+t+wna+ r+qg+tdvpL+++GreqA+a+a  la+ ++dai++S+l+Ra +Ta+++a+ +glpv+ d++LrE++fG+w+gl+ +e++++yp+
  KIR60572.1   4 LIVWRHGNTDWNAASRVQGQTDVPLNDLGREQAAAAAPLLAALRPDAIVASDLRRAADTAAALAALTGLPVRADARLRERHFGRWQGLELTEAEQRYPD 102
                 6889*********************************************************************************************** PP

                 SHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB--.-TT-EEEEEE-S.S-EEEEEEE CS
  His_Phos_1 100 eleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglpleelrrlel.dnaslsvlefde.ggwrlvrln 192
                 e+++w+++++d +  + Esl+d+ +Rv aal+++a++ +g+t++v +Hgg+ r  + +llg++ + lr +    n+ +++l+  + +gw+l+++n
  KIR60572.1 103 EHARWRAGDPD-PGADIESLDDLGKRVGAALQDAADAAPGGTIVVATHGGAARQGCGHLLGWDHAVLRAIGSlRNCHWTELRDSGtRGWHLRAHN 196
                 ********996.4445****************************************************99888********75552668888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1715.55
//
Query:       KIR60573.1  [L=257]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-46  156.6   1.5    8.6e-46  156.4   1.5    1.0  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    2.1e-35  122.0   0.1    2.7e-35  121.6   0.1    1.1  1  adh_short       short chain dehydrogenase
    7.6e-11   42.2   0.5      1e-10   41.8   0.5    1.2  1  KR              KR domain
    5.7e-07   29.2   0.1    1.2e-06   28.2   0.1    1.5  1  Epimerase       NAD dependent epimerase/dehydratase family
    0.00025   21.0   3.9    0.00043   20.2   3.9    1.4  1  NAD_binding_10  NAD(P)H-binding
    0.00045   20.5   0.1    0.00091   19.5   0.1    1.5  1  TrkA_N          TrkA-N domain
     0.0038   16.7   0.0        0.2   11.0   0.0    2.1  2  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
  ------ inclusion threshold ------
       0.16   10.9   0.0        0.2   10.6   0.0    1.1  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4   1.5   3.8e-49   8.6e-46       4     232 ..      12     246 ..       7     248 .. 0.88

  Alignments for each domain:
  == domain 1  score: 156.4 bits;  conditional E-value: 3.8e-49
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdrald 100
                   +gIGrai+++l + G +vv+  ++ +  + +++ ++    +++  D+ d ++ +++++  +e+   l + vnna++ ++  g + +t+ +e+ + + 
    KIR60573.1  12 RGIGRAIVERLLAPGDTVVVLERDPATTEWTRTHHAGDRVRAVVGDAGDADDAARAADL-AERAAPLAGWVNNAAVFRD--GAADSTDPAELYELIG 105
                   8*************************9666666666555668***********999775.66778**************..**9************* PP

                   HHTHHHHHHHHHHHH...HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT......HHHH CS
  adh_short_C2 101 vnlyslfllakaalp...lmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg......fdel 188
                    n++ ++  a  a++   ++ +gg+ivn+ss +a+r+vp+   y++aKaale+ltr+lAv+ g++giR Nav+ g + T+  + +        + ++
    KIR60573.1 106 LNVRPAVVGAATAVRrfrAAGRGGAIVNVSSHQARRAVPGALPYSVAKAALEGLTRALAVDHGRHGIRTNAVALGSVVTERHETFLAglppaeAARV 202
                   ****8888777777745444455********************************************************996654333444446669 PP

                   HHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 189 leelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                   ++el + +p+gr+g+p+evaea+++L+s++as+++G tl vDgG
    KIR60573.1 203 EAELGRLHPVGRIGRPDEVAEAVAYLLSPQASFVNGVTLPVDGG 246
                   9999***************************************9 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   0.1   1.2e-38   2.7e-35       4     187 ..       6     187 ..       4     193 .. 0.94

  Alignments for each domain:
  == domain 1  score: 121.6 bits;  conditional E-value: 1.2e-38
                 EEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHHH CS
   adh_short   4 lvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeewe 102
                 +vtG+++GIGrai+++l++ G +vvv++r +++ e + ++    g+++ a+ +D  d++++ ++ + a ++  +l   vnNA++ ++g++ +++ +e  
  KIR60573.1   6 VVTGGGRGIGRAIVERLLAPGDTVVVLERDPATTEWTRTHHA--GDRVRAVVGDAGDADDAARAADLA-ERAAPLAGWVNNAAVFRDGAADSTDPAELY 101
                 8*****************************998855555543..799**************9998877.999*************************** PP

                 HHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short 103 rvievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 ++i +N+  ++  ++++++ +  ++++G+IvnvsS +++ +v+g  +Ys +Kaa++gltr+la ++ ++gir nava G v T+  
  KIR60573.1 102 ELIGLNVRPAVVGAATAVRRFRaAGRGGAIVNVSSHQARRAVPGALPYSVAKAALEGLTRALAVDHGRHGIRTNAVALGSVVTERH 187
                 ********************99999*********************************************************9876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.5   4.6e-14     1e-10       1     164 [.       3     164 ..       3     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 4.6e-14
                 SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT CS
          KR   1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkllee 99 
                 g++++tGG  g+G+++++ l++ g + +v+l R++a     + + ++ ++ g +v++v  D  d+d+ +++ + ++ +++p++G ++ A v+rd++ ++
  KIR60573.1   3 GSFVVTGGGRGIGRAIVERLLAPGDT-VVVLERDPA----TT-EWTRTHHAGDRVRAVVGDAGDADDAARAADLAE-RAAPLAGWVNNAAVFRDGAADS 94 
                 789********************975.667788833....33.33456778********************99987.556******************* PP

                 --HHHHHHH....HTTTTHHHHHHHHHTTT.S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHH CS
          KR 100 mtaedleqv....lapKvkGawnLhelled.esldffvlfSSiagllgsagqanYaaaNaflDalaeyrr 164
                 ++ ++l ++    ++p v Ga    + ++   +   +v +SS  +    +g   Y+ a a l++l +  +
  KIR60573.1  95 TDPAELYELiglnVRPAVVGAATAVRRFRAaGRGGAIVNVSSHQARRAVPGALPYSVAKAALEGLTRALA 164
                 *****9997232246888887766666655599*****************************98876543 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1   5.2e-10   1.2e-06       2     188 ..       6     197 ..       5     229 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 5.2e-10
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHH.T-SEEEE--S.---HHHHHHSHHHHHH.H CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkee.qpdavihlAa.vggvaassedpadfie.k 90 
                 +VtG+   iG+a+v++ll+ g +v++l r++ + ++ r +++           +d  d+++ ++l ++       ++ Aa   + aa s+dpa+++e +
  KIR60573.1   6 VVTGGGRGIGRAIVERLLAPGDTVVVLERDPATTEWTRTHHAgdrvravVGDAGDADDAARAADLAERAaPLAGWVNNAAvFRDGAADSTDPAELYElI 104
                 79************************************9999****66655566677777778888888344445666777999999*******99956 PP

                 HTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT...-EEEEEEESEEESTTS-TTSTTSHH CS
   Epimerase  91 nlqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyg...lnaiilrlfnlyGprngegevsrvi 186
                  l++   ++ aa    v+r+  ++      ++ +  +   +    ++   pY++aK+a e l++a+a ++g   +++ ++ l +++ +r +e++ +++ 
  KIR60573.1 105 GLNVRPAVVGAAT--AVRRFRAAGRGGAIVNVSSH-QARRA----VPGALPYSVAKAALEGLTRALAVDHGrhgIRTNAVALGSVVTER-HETFLAGLP 195
                 6666666666665..78899999885555555552.33333....46778****************99988333444444444444444.666666655 PP

                 HH CS
   Epimerase 187 pa 188
                 pa
  KIR60573.1 196 PA 197
                 55 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   3.9   1.9e-07   0.00043       1     108 [.       9     146 ..       9     167 .. 0.65

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.9e-07
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH...CTTTCEEEE--TT-CCHHHHHHT............T-SEEEES---TCCHHHH... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele...aeeglevvegdvtdvedlaealk............gadaVvsalggggkdeeg... 77 
                     G+  ++Gr++v++lla g  +v++l R+p+ ++  +   a +++++v+gd+ d++d a+a +            +  aV+  ++++++d      
      KIR60573.1   9 GGGRGIGRAIVERLLAPG-DTVVVLERDPATTEWTRthhAGDRVRAVVGDAGDADDAARAADlaeraaplagwvNNAAVFRDGAADSTDPAElye 102
                     77789************6.8**********998555322458*****************998555555555544444555555555443222455 PP

                     ............HHHHHHHHHHCT.--EEEEEEETTTTSGCGCH CS
  NAD_binding_10  78 ............aknivdaakeag.vkRfvlvsaigvgdevpge 108
                                 a+++v+  ++ag    +v vs+ ++++ vpg+
      KIR60573.1 103 liglnvrpavvgAATAVRRFRAAGrGGAIVNVSSHQARRAVPGA 146
                     55555555555544444444444423445556666666655555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   4.1e-07   0.00091       1      53 [.       5      62 ..       5      75 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.1e-07
                EEEES-SH.HHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTT....SEEEES-TTSHH CS
      TrkA_N  1 iiiiGlGr.vGrslaeeLse.ggkdvvvidkdeerveelreeg....levvvgdatdee 53
                +++ G Gr +Gr+++e+L + g   vvv ++d+++ e  r +     +++vvgda d +
  KIR60573.1  5 FVVTGGGRgIGRAIVERLLApGD-TVVVLERDPATTEWTRTHHagdrVRAVVGDAGDAD 62
                6888999879**********666.6**********99998777667788*****98865 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   8.9e-05       0.2       2      66 ..       7      63 ..       6      76 .. 0.79
   2 ?    3.7   0.0     0.015        33     152     196 ..     148     194 ..     137     217 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.9e-05
                   EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHH CS
  GDP_Man_Dehyd  2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDsss 66
                   +TG+   iG  ++e+Ll+ g +v+++ r+ ++++ +r +h  +        +++ + gD  D++ 
     KIR60573.1  7 VTGGGRGIGRAIVERLLAPGDTVVVLERDPATTEWTRTHHAGD--------RVRAVVGDAGDADD 63
                   8998888*************************99999988764........44555555555544 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.015
                    HHHHHHHHHHHHHHHHHHHH---EEEEEE-E..EESTTS-TTSCCCH CS
  GDP_Man_Dehyd 152 PYaaaKlyadwivvnyreayglfavngilfn..hesprrgetfvtrk 196
                    PY++aK++ + ++++    +g + + ++          r+etf   +
     KIR60573.1 148 PYSVAKAALEGLTRALAVDHGRHGIRTNAVAlgSVVTERHETFLAGL 194
                    **************998888877666665541133344555565555 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     9e-05       0.2       1      75 [.       6      79 ..       6      95 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9e-05
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlas 75
                vvtGg+  +Gra+v++L+  ++   v   D ++ ++++ +    +v+  + gD  d+d+  +a + ++    la+
  KIR60573.1  6 VVTGGGRGIGRAIVERLLAPGDTVVVLERDPATTEWTRTHHAGDRVR-AVVGDAGDADDAARAADLAERAAPLAG 79
                79***999*************86666666666666665554444444.9999*9999999999887766555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1843.22
//
Query:       KIR60574.1  [L=326]
Description: hypothetical protein TK50_21860 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-06   26.3   0.0    7.2e-06   25.9   0.0    1.2  1  DNA_pol3_delta   DNA polymerase III, delta subunit
    4.9e-05   23.3   0.1    0.00014   21.8   0.0    1.8  2  DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau do


Domain annotation for each model (and alignments):
>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0     8e-10   7.2e-06      47     168 ..      57     173 ..      14     178 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 8e-10
                     TTSTTTTSSSSEEEEEEE--.....TT-S-TTHHHHHHHHTTT--SSEEEEEEES.S--HHHHHHHHHTT.TEEEEEE----TT.THHHHHHHHH CS
  DNA_pol3_delta  47 eecetlpffsdkrivvlknpklltkesklnekllkeLeeylsnlpedtlLiliapkklderkklvklLkk.katvveaktlkee.elkkwiqkra 139
                      e+ ++++f+++r++vl +       ++  ++l+++L +y +n++++++L++      ++ k   + L    atvv a +lk+  e   ++ + +
      KIR60574.1  57 AEMLSPSLFGGRRVLVLRSG------QDARKDLVAALLAYAKNPDPEVHLVVLHL-GAAKGKAFADGLRAaGATVVPAAKLKGHrERVAFVRDEV 144
                     58899************999......55899*********************999.5555666666666548*********87527889****** PP

                     HHTT-EE-HHHHHHHHHHHTT-HHHHHHH CS
  DNA_pol3_delta 140 qelglkiekealelLlelvennlsaikqe 168
                     ++ g k +++a+e L+ +v+ +l+ ++ +
      KIR60574.1 145 RRAGGKCTDDAAEALIAAVGTDLRELAAA 173
                     ***********************998765 PP

>> DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.59   5.3e+03      60      84 ..      30      53 ..      21      63 .. 0.49
   2 !   21.8   0.0   1.6e-08   0.00014      19     129 ..     203     319 ..     199     323 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.59
  DNA_pol3_gamma3 60 qltllkvlpeaaedlslpeeererl 84
                     +++++++++ a+ d   +++ + ++
       KIR60574.1 30 AVARVRAVD-AGVDVREYQAGALAV 53
                     344444443.344444444444444 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 1.6e-08
  DNA_pol3_gamma3  19 ldlleallegdaaaalaelreqyaaGadpvvvlrdLlellhqltllkvlp.....eaaedlslpeeererlkelaeklsleqLqrlWqlllkgi 107
                      + + +a + gd+ aal+ lr ++  G+dpv + + L++ +++++++ +++     + a +l +p+ + +  ++ a+  ++e L r+ q   +  
       KIR60574.1 203 FTVADATMVGDVPAALEALRWALHVGVDPVPIADALADGVRTVARVAAAGrgdpyQLASSLGMPAWKVKSAQQRARGWTPEGLVRAMQAAAECN 296
                      56889*******************************************9752112234455688889999999999999999999999999999 PP

  DNA_pol3_gamma3 108 eevkn.apdpraaaEmvLlRlaa 129
                      + vk  + d++ a+E ++  +aa
       KIR60574.1 297 AAVKGgSDDRAYALERAVFSVAA 319
                      99986244556677777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2332.09
//
Query:       KIR60575.1  [L=88]
Description: 30S ribosomal protein S20 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-28   97.9  16.8    4.3e-28   97.8  16.8    1.0  1  Ribosomal_S20p  Ribosomal protein S20
     0.0036   17.9   1.7     0.0036   17.9   1.7    1.5  2  DUF4398         Domain of unknown function (DUF4398)
     0.0061   16.8   2.2     0.0067   16.6   2.2    1.2  1  SMBP            Small metal-binding protein
  ------ inclusion threshold ------
      0.028   14.7   0.6      0.035   14.4   0.4    1.3  1  DUF4878         Domain of unknown function (DUF4878)


Domain annotation for each model (and alignments):
>> Ribosomal_S20p  Ribosomal protein S20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8  16.8   9.5e-32   4.3e-28       1      81 [.       2      83 ..       2      84 .. 0.99

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 9.5e-32
                    ..SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC.-HHHHHHHHHHHHHHHHHHHCTTSSTCCHHHHHHHHHHHHH CS
  Ribosomal_S20p  1 ANikSakKrirqnekrrlrNrsyksavrtaiKkvraaiea.dkekaqealkkaiskidkaakkgvihkNtAaRkkSrlakki 81
                    ANikS++Kr rqnekrrlrN+s+ks+++tai+k+++a+ea d+eka  ++++a +k+dka++kgvih N+Aa++kS +ak++
      KIR60575.1  2 ANIKSQIKRNRQNEKRRLRNKSVKSSLKTAIRKFHEAAEAgDAEKAAVLMRDASRKLDKAVSKGVIHSNQAANRKSAIAKRV 83
                    9*************************************999***************************************97 PP

>> DUF4398  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1         3   1.4e+04      62      67 ..       9      14 ..       2      20 .. 0.45
   2 !   17.9   1.7     8e-07    0.0036       4      57 ..      29      82 ..      26      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3
     DUF4398 62 AearAk 67
                ++ r +
  KIR60575.1  9 KRNRQN 14
                333322 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 8e-07
     DUF4398  4 adAraaleaAraagaeeyApaeleeAreaLaqAeaamaekdyeeAdhlaylAer 57
                  A  ++++A++ag++e A++ +++A ++L++A ++    ++++A++    A+r
  KIR60575.1 29 KTAIRKFHEAAEAGDAEKAAVLMRDASRKLDKAVSKGVIHSNQAANRKSAIAKR 82
                56778899*************************996666666667776666665 PP

>> SMBP  Small metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   2.2   1.5e-06    0.0067      25      71 ..      26      73 ..       5      87 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.5e-06
                -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH......----- CS
        SMBP 25 ehlaeAiehaeaAvahgkaghakalveHaeealkhakaa...aekakeee 71
                ++l+ Ai++ ++A+++g+a++a +l+  a + l +a +       +++++
  KIR60575.1 26 SSLKTAIRKFHEAAEAGDAEKAAVLMRDASRKLDKAVSKgviH--SNQAA 73
                48899*****************************999885432..22222 PP

>> DUF4878  Domain of unknown function (DUF4878)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.4   7.8e-06     0.035       8      55 ..      27      74 ..      21      85 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.8e-06
     DUF4878  8 tpeeavknFleavkeGdvedaikyltestreedalaeklkgkfkelka 55
                + ++a+  F ea++ Gd+e+a+ ++ +++r+ d+  +k    ++++++
  KIR60575.1 27 SLKTAIRKFHEAAEAGDAEKAAVLMRDASRKLDKAVSKGVIHSNQAAN 74
                55899**************************99998886666665333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1434  (0.0799822); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.31s 00:00:00.76 Elapsed: 00:00:00.48
# Mc/sec: 552.87
//
Query:       KIR60576.1  [L=177]
Description: hypothetical protein TK50_21880 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-42  143.7   0.7    4.5e-42  143.2   0.7    1.2  1  DUF4240   Protein of unknown function (DUF4240)


Domain annotation for each model (and alignments):
>> DUF4240  Protein of unknown function (DUF4240)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   0.7   2.5e-46   4.5e-42       1     127 [.       1     130 [.       1     131 [. 0.99

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 2.5e-46
     DUF4240   1 MdedeFWaliesareaaggddeevaerleaeLaklppeeivaFekildellralytwdlwaaaylinggcsddgFlyfrawliaqGrevyeevladpds 99 
                 M++d+FW+li++ar+  gg + +va+r++a La+++ ++i++++++ +++++a+y+ +lw+aaylingg sddgF+yfr+wl++qGr+v+++++adpds
  KIR60576.1   1 MRTDDFWQLIDQARAGGGGAAGAVAARAVALLAERDAADIIGYARHQRRVMAASYRAELWGAAYLINGGASDDGFEYFRGWLMTQGRQVFARAVADPDS 99 
                 99************************************************************************************************* PP

     DUF4240 100 Laelpave...deeeelefeellyvaaeaYe 127
                 Laelp+++    ++ee+e+e +l+va+eaY+
  KIR60576.1 100 LAELPKIRqaaLTGEEFEAEAMLTVAEEAYR 130
                 ********99999*****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1305.71
//
Query:       KIR60577.1  [L=625]
Description: GTP-binding protein LepA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-51  173.8   0.0    4.3e-51  173.2   0.0    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    2.8e-49  165.8   0.4    5.4e-49  164.8   0.4    1.5  1  LepA_C       GTP-binding protein LepA C-terminus
    7.2e-23   80.4   0.0    1.6e-22   79.3   0.0    1.7  1  EFG_C        Elongation factor G C-terminus
    2.8e-07   30.8   3.5    5.7e-07   29.8   3.5    1.6  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    0.00018   21.6   0.0    0.00031   20.8   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0002   21.4   0.0    0.00077   19.5   0.0    1.9  1  EFG_II       Elongation Factor G, domain II
  ------ inclusion threshold ------
      0.016   15.0   0.0       0.03   14.1   0.0    1.4  1  RF3_C        Class II release factor RF3, C-terminal domain


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.2   0.0   1.7e-54   4.3e-51       2     191 ..      19     199 ..      18     202 .. 0.95

  Alignments for each domain:
  == domain 1  score: 173.2 bits;  conditional E-value: 1.7e-54
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE.......TTCSSEEEEEEEESSSGGGHHHHHHHHHT CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle.......ketkkylinliDtPGHvdFskevirglrv 93 
                 rirn++ii+h+DhGK+TL dr+l+ tg ++ ++++a+   +lD+++ ErergiTiks+a+ +        + +++  +n+iDtPGHvdF+ ev+r+l++
  KIR60577.1  19 RIRNFCIIAHIDHGKSTLADRMLQLTGVVDPRQMRAQ---YLDRMDIERERGITIKSQAVRMPwtiregdRAGEQAVLNMIDTPGHVDFTYEVSRSLAA 114
                 79*****************************999986...8**************************99779*************************** PP

                 -SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHH CS
    GTP_EFTU  94 lDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvel 191
                 ++ga+l+vda++G+e+qt  +l+lal+++++ii ++NK+D + a+ ++ +ee+ + +             g +   ++++S+++g+gv  ll+ +v+ 
  KIR60577.1 115 CEGALLLVDAAQGIEAQTLANLYLALENDLKIIPVLNKIDLPAAQPEKYAEELAHLI------------GG-DPADCIRVSGKTGDGVPYLLDEIVRQ 199
                 ******************************************************555............45.3678*****************99975 PP

>> LepA_C  GTP-binding protein LepA C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.8   0.4   2.1e-52   5.4e-49       2     106 ..     508     612 ..     507     613 .. 0.98

  Alignments for each domain:
  == domain 1  score: 164.8 bits;  conditional E-value: 2.1e-52
                 SSCB-GGG-EEEETTTHHHHHHHHHHHHHHHS---SS-EEEEEEETTEEEEEEEE----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      LepA_C   2 ngekvdaLslivhrskaeergrklvekLkeliprqlfevaiqaaigskviaretikalrkdvlaklyggditrkkKllekqkegkkrlkkignveipqe 100
                 +ge+vda+s ivh++ka++ g ++++kL++liprq+fev+iqaaigs+viareti+a+rkdvlak+yggdi+rk+Kllekqkegkkr+k++g+ve+pqe
  KIR60577.1 508 HGEPVDAFSAIVHKDKAYNYGVTIAAKLRNLIPRQQFEVPIQAAIGSRVIARETIRAIRKDVLAKCYGGDISRKRKLLEKQKEGKKRMKMVGRVEVPQE 606
                 799************************************************************************************************ PP

                 XXXXXX CS
      LepA_C 101 aflavl 106
                 af+a l
  KIR60577.1 607 AFIAAL 612
                 ***988 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.0   6.4e-26   1.6e-22       2      87 ..     418     504 ..     417     506 .. 0.94

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 6.4e-26
                 EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-T.THHHCHHHCTTTS-EEEEEEEEEEE--HHHHH CS
       EFG_C   2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeli.gfateLrslTkGegsfsmefsgYeevpgdkld 87 
                 ++EP+v++++ +p++yvg+v+++++ rrG +++m++ + +rv +++++Plae+i +f+++L+s TkG++s+++e sg + ++ +k+d
  KIR60577.1 418 VYEPVVRATVLTPNDYVGAVMELCQGRRGSLLGMDYLSADRVELRYTLPLAEIIfDFFDQLKSRTKGYASLDYEPSGEQASDLVKVD 504
                 79*************************************************************************998887777766 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   3.5   2.2e-10   5.7e-07       1      74 []     225     295 ..     225     295 .. 0.96

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.2e-10
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  G+v+++rv++G +   d++++  ++t+  +++ +i+ +  ++ + d + +g+++++i+++k++ ++ +vGdt+t
   KIR60577.1 225 GVVTYVRVIDGRISARDRIKM--MSTGAVHELLEIGVISPEMVKADALGVGEVGYLITGVKDVRQS-RVGDTVT 295
                  89*******************..8887778***********************************6.*****96 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.2e-07   0.00031       4     114 .]      25     152 ..      22     152 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.2e-07
                 EEESTTSSHHHHHHHHHT...............STEEESSSTTSSSSEEEEEEEETTEE.........EEEEECGGCSSHHHHHHHHHHHHHHHHCTSE CS
    MMR_HSR1   4 ivGrpNvGKStLinaltg...............ekaivsdkpgtTrdinegrvklkgke.........ielvDtpGliegaseekglgkaflaleeadl 78 
                 i+ +   GKStL  ++++               ++  ++++ g T++ +  r+ +  +e         ++++DtpG ++      +++++++    ++ 
  KIR60577.1  25 IIAHIDHGKSTLADRMLQltgvvdprqmraqylDRMDIERERGITIKSQAVRMPWTIREgdrageqavLNMIDTPGHVD---FTYEVSRSLA---ACEG 117
                 5556678*********9777777787777765559999************9998542223334445559*******655...1223444444...489* PP

                 EEEEEETTTTCSHHHHHHHHHHHHH..TTSEEEEEEES CS
    MMR_HSR1  79 illvvdaseeklkpldeeleellee..akkplilvlnk 114
                 +ll+vda+++ ++++  +l++l     ++ ++i vlnk
  KIR60577.1 118 ALLLVDAAQG-IEAQ--TLANLYLAleNDLKIIPVLNK 152
                 ******8844.6433..444443222266778889997 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     3e-07   0.00077       2      71 ..     311     383 ..     311     387 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3e-07
      EFG_II   2 PePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsG.....mGelHleivverlkreykvev 71 
                 P+P++   + p + +d  +l +aL++l   D  l++e  +eT   +  G     +G lHlei+ erl+rey++++
  KIR60577.1 311 PKPMVYSGLYPIDGSDYPNLREALDKLKLNDAALDYE--PETSGALGFGfrcgfLGLLHLEIIRERLEREYNLDL 383
                 899*****************************99875..7888777655333457*****************986 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.2e-05      0.03      20      91 ..     324     397 ..     312     423 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
                 GGGHHHHHHHHHHHHHCTSSEEEEET.TS...S-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--EEEEEE- CS
       RF3_C  20 plkrkqlrkgleqLaeEGavqvfkeeeag...eelilgaVGqLQfeVveeRlknEYgvevrleslpyslarwves 91 
                  + + +lr++l++L+   a+  +++e++g     +  g +G L +e+++eRl++EY++++  +  p  + r +++
  KIR60577.1 324 GSDYPNLREALDKLKLNDAALDYEPETSGalgFGFRCGFLGLLHLEIIRERLEREYNLDLISTA-PNVVYRAITE 397
                 5556667777777777777777777766533223668999*******************86554.4445555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4411.22
//
Query:       KIR60578.1  [L=95]
Description: transglycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.014   15.7   9.7      0.014   15.7   9.7    2.2  2  Transgly_assoc  Transglycosylase associated protein
      0.063   13.7   1.4      0.063   13.7   1.4    1.9  2  DUF983          Protein of unknown function (DUF983)
        2.6    7.5   4.8        3.3    7.1   4.8    1.1  1  DUF1129         Protein of unknown function (DUF1129)
          7    7.2   6.6         35    4.9   6.6    1.9  1  DUF4231         Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> Transgly_assoc  Transglycosylase associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   2.6      0.02        90       2      19 ..       5      22 ..       2      29 .. 0.54
   2 ?   15.7   9.7   3.1e-06     0.014       1      45 [.      38      84 ..      38      88 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.02
  Transgly_assoc  2 ilGivGAfvGgfllgllg 19
                    + Gi+ A+v g++ g+lg
      KIR60578.1  5 VWGIITAIVVGLIVGALG 22
                    344444444444444444 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 3.1e-06
  Transgly_assoc  1 IilGivGAfvGgfllgllgi..gvgggelaslivaiiGAiILLfivr 45
                    +++Gi  A++G++l++++gi  +++g +++ l+v ++ A I +++v 
      KIR60578.1 38 MLIGIGAALLGTVLARAMGIatETAGVDWGELLVQVVLAAIAVALVA 84
                    589**9*************************************9985 PP

>> DUF983  Protein of unknown function (DUF983)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.4   1.4e-05     0.063      30      71 ..       9      51 ..       5      58 .. 0.83
   2 ?    0.2   0.2      0.24   1.1e+03      28      42 ..      68      82 ..      55      90 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.4e-05
      DUF983 30 fvilivghlvvpla.llvevayepplwvhlliwlpltlllsll 71
                ++ ++vg +v +l  l+v  + ++p+w+h+li +  +ll ++l
  KIR60578.1  9 ITAIVVGLIVGALGrLVVPGRQNMPIWLHMLIGIGAALLGTVL 51
                5667777777776689****************99999988875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.24
      DUF983 28 ayfvilivghlvvpl 42
                  +v +++++++v+l
  KIR60578.1 68 ELLVQVVLAAIAVAL 82
                444444444444444 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.8   0.00074       3.3     117     193 ..       8      82 ..       2      93 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00074
     DUF1129 117 llvalvgGlamvlvyrlltrekkkkkrpplwkrllilllllvvwlvlftlvallpaviNpvL.pplvliiigviafvv 193
                 +++a+v+Gl+   + rl+ +     +  p+w  +li +++ ++ +vl  ++++ +++  +   + lv++++++ia+++
  KIR60578.1   8 IITAIVVGLIVGALGRLVVP---GRQNMPIWLHMLIGIGAALLGTVLARAMGIATETAGVDWgELLVQVVLAAIAVAL 82 
                 56777777777888899987...7778999999999999999999999999998888777762446788888888765 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   6.6    0.0078        35      15      59 ..      31      80 ..       2      95 .] 0.75

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0078
     DUF4231 15 rrfrllrlitivlgallpilvs.....sklgagvsvlkiltallsalvai 59
                ++  +l++++ +++all ++ +      ++ agv++  +l+ ++ a++a+
  KIR60578.1 31 NMPIWLHMLIGIGAALLGTVLAramgiATETAGVDWGELLVQVVLAAIAV 80
                55567888888888888888888998977888888888887666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       903  (0.0503653); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 702.07
//
Query:       KIR60579.1  [L=93]
Description: transglycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0063   16.7  11.9     0.0063   16.7  11.9    2.1  2  Transgly_assoc   Transglycosylase associated protein
  ------ inclusion threshold ------
       0.02   15.3   1.3       0.02   15.3   1.3    1.9  2  DUF983           Protein of unknown function (DUF983)
      0.051   13.3   2.1      0.051   13.3   2.1    2.8  3  PRD1_DD          PRD1 phage membrane DNA delivery
       0.85   10.0   7.0       0.34   11.3   3.0    2.0  2  Tmemb_170        Putative transmembrane protein 170
          4    8.0   5.5         10    6.7   5.5    1.7  1  DUF4231          Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> Transgly_assoc  Transglycosylase associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   1.9    0.0058        21       1      20 [.       2      21 ..       2      30 .. 0.86
   2 !   16.7  11.9   1.8e-06    0.0063       2      45 ..      37      82 ..      36      86 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0058
  Transgly_assoc  1 IilGivGAfvGgfllgllgi 20
                    +++Gi+ A++ g++ g+lg 
      KIR60579.1  2 TVVGIITALIVGLIVGALGR 21
                    5999999*****99999996 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.8e-06
  Transgly_assoc  2 ilGivGAfvGgfllgllgi..gvgggelaslivaiiGAiILLfivr 45
                    ++G+  A++G++l++++gi  +++g +++ l+v ++ A I ++iv 
      KIR60579.1 37 LVGVGAALLGTVLARAMGIatETAGVDWGELLVQVVVAAIAVAIVA 82
                    7899999*************************************95 PP

>> DUF983  Protein of unknown function (DUF983)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   1.3   5.7e-06      0.02      29      71 ..       6      49 ..       3      53 .. 0.90
   2 ?    0.7   0.3       0.2   7.1e+02      25      43 ..      63      81 ..      54      87 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.7e-06
      DUF983 29 yfvilivghlvvpla.llvevayepplwvhlliwlpltlllsll 71
                +++ livg +v +l  l+v  + ++p+w+h+l+ +  +ll ++l
  KIR60579.1  6 IITALIVGLIVGALGrLVVPGRQNMPIWLHMLVGVGAALLGTVL 49
                58999****99999889****************99999988875 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.2
      DUF983 25 dgPayfvilivghlvvpla 43
                d +  +v ++v++++v+++
  KIR60579.1 63 DWGELLVQVVVAAIAVAIV 81
                5555566666666666554 PP

>> PRD1_DD  PRD1 phage membrane DNA delivery
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   3.3      0.22   7.7e+02       7      17 ..       2      12 ..       1      24 [. 0.74
   2 ?    0.1   0.1      0.19   6.8e+02      14      34 ..      43      62 ..      34      63 .. 0.50
   3 ?   13.3   2.1   1.4e-05     0.051       3      31 ..      63      91 ..      61      92 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.22
     PRD1_DD  7 tlvtvltAiiG 17
                t+v ++tA+i 
  KIR60579.1  2 TVVGIITALIV 12
                78999999773 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.19
     PRD1_DD 14 AiiGvAilAvlvsrrsntAGv 34
                A++G  +lA  +     tAGv
  KIR60579.1 43 ALLG-TVLARAMGIATETAGV 62
                4443.2344444444566665 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 1.4e-05
     PRD1_DD  3 eFvktlvtvltAiiGvAilAvlvsrrsnt 31
                ++++ lv v+ A i vAi+A +  rrs t
  KIR60579.1 63 DWGELLVQVVVAAIAVAIVAGVGGRRSVT 91
                78899********************9987 PP

>> Tmemb_170  Putative transmembrane protein 170
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.0   9.5e-05      0.34      49      97 ..       2      49 ..       1      58 [. 0.87
   2 ?    0.6   0.1       0.2     7e+02      57      68 ..      71      82 ..      61      89 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.5e-05
   Tmemb_170 49 llvgvlepltagaitsaviaavyraaslemstlyalvwGvgqtillvii 97
                 +vg++++l++g+i++a ++     +  +m ++  +++Gvg ++l  ++
  KIR60579.1  2 TVVGIITALIVGLIVGA-LGRLVVPGRQNMPIWLHMLVGVGAALLGTVL 49
                689************97.577888999**************99987665 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.2
   Tmemb_170 57 ltagaitsavia 68
                ++++ai  a++a
  KIR60579.1 71 VVVAAIAVAIVA 82
                333333333333 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.5    0.0028        10      14      66 ..      28      87 ..       1      93 [] 0.80

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0028
     DUF4231 14 krrfrllrlitivlgallpilvs.....sklgagvsvlkiltal..lsalvailaaleef 66
                +++  +l+++  v++all ++ +      ++ agv++  +l+ +  ++++vai+a++ + 
  KIR60579.1 28 QNMPIWLHMLVGVGAALLGTVLAramgiATETAGVDWGELLVQVvvAAIAVAIVAGVGGR 87
                556678999999999999999999999977888888888887550055666778777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 632.08
//
Query:       KIR60580.1  [L=429]
Description: sugar transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-45  156.8  26.4    1.8e-45  156.3  26.4    1.2  1  SBP_bac_1  Bacterial extracellular solute-binding protein
    7.2e-40  137.6  18.2    1.1e-39  137.0  18.2    1.2  1  SBP_bac_8  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.3  26.4     2e-49   1.8e-45       8     312 ..      51     338 ..      44     341 .. 0.92

  Alignments for each domain:
  == domain 1  score: 156.3 bits;  conditional E-value: 2e-49
                 HHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCEEE CS
   SBP_bac_1   8 aalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkildskv 106
                  a+   v ++f+k+hp+ +V+++++++ +   k+++a+a+G gp Dv   +n+ +  +a + +l+++++ ++a+  +g         ++ lp+    + 
  KIR60580.1  51 TAFLDGVEAEFKKKHPDTDVVVQYIPWLEAPKKFQAALAGGEGP-DVTELGNTETQGWAAQEALADVTAKFAAWP-EG---------KDILPDLVRNAQ 138
                 4666667688**********************************.****************************94.33.........235555555322 PP

                 ....ES.EEEEE.EEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT....HHCSHHHHS CS
   SBP_bac_1 107 ....ly.vPlya.argliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgg....gldnpegvt 195
                     +y vP+ya +r+l+Y++d+f++ag++pp++Wdelv+aak + +k +++    +g +  g+  + ++ +++++gg+ +++ g     g ++p +++
  KIR60580.1 139 ldgkQYgVPWYAgVRALYYRTDWFAEAGVKPPTNWDELVAAAKAVQAKKPGT----YGIALPGNSELPFYSFLWGAGGEIATQQGDtwksGYTSPQAQQ 233
                 35789******77***************************************....******************************************* PP

                 HHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE.EEEEEEEEBT CS
   SBP_bac_1 196 aatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi.lgayglaipk 293
                 a++++++l+      ++ +++ a+++++ +a+++f++G+aama++g+w+         ++a ++d ++ ++ +g +p+P+ +g++ +   g++ +a++ 
  KIR60580.1 234 AVKFWTDLV----TVHKVAPPAAAGWNEIDARTQFATGKAAMAFAGSWQ---------AGAIKKDNPEIEKVWGTFPIPGPDGKPAPAfAGGSDIALWQ 319
                 *********....7779********************************.........9********************998888888*********** PP

                 TCSTHHHHHHHHHHHTSHH CS
   SBP_bac_1 294 gsknpeaAkkFldfllspe 312
                 +sk+++ A+++l+ lls++
  KIR60580.1 320 DSKKQDLAWDYLTVLLSKQ 338
                 ****************986 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0  18.2   1.2e-43   1.1e-39       4     281 ..      59     369 ..      57     370 .. 0.82

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 1.2e-43
                 HHHHHH-.TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GG....GSTTHHH.-HHHHHTT--TS.----EEEEEEE-E CS
   SBP_bac_8   4 kefekkt.gvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladls....dldnldd.ltdalaavgydgklygvPyasetpyv 96 
                 +ef+kk+ + +v v+++++ ++  k++aala g++pd+ ++++n    + +a++ +lad++      ++ +d l+d ++ +++dgk ygvP+ ++   +
  KIR60580.1  59 AEFKKKHpDTDVVVQYIPWLEAPKKFQAALAGGEGPDV-TELGN-TETQGWAAQEALADVTakfaAWPEGKDiLPDLVRNAQLDGKQYGVPWYAGV-RA 154
                 69**********************************96.57776.56788***********9775335555536**9999***************7.9* PP

                 EEEEHHHHHHS...---BHHHHHHHHHHH....HHH-SEGG---G...GGGGGTHHETTEE---H.........HHH.HHHHHHHHHHHHTT-EE.... CS
   SBP_bac_8  97 liynkdlleka..edpktwdellaaakkl....kgkfglpdpasg...wlqaallakdgksldddg.......gkdglkealellkklkdngkty.... 175
                 l+y++d + +a  ++p+ wdel+aaak++    +g +g++ p+++   + + +l+ ++g+  ++ g       ++++  +a++++++l+   k+     
  KIR60580.1 155 LYYRTDWFAEAgvKPPTNWDELVAAAKAVqakkPGTYGIALPGNSelpF-YSFLWGAGGEIATQQGdtwksgyTSPQAQQAVKFWTDLVTVHKVAppaa 252
                 **********9**************999966555777888888766652.44444434444455433322223566669999*****997777666777 PP

                 ..-S..--SSTTTTTSBSEEEE-TTHHHHHH-TTTSEEEE...--...S--....EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH--- CS
   SBP_bac_8 176 ..dtgadavsefanGevaftingswdiaaaqkagkklgai...vp...kqg....sfaggkglavpknaknedlaAldFlkwltspenqaalaektgyi 262
                   ++  da   fa+G++a++++gsw++ a++k++++++ +   +p   ++g    +fagg+ +a   ++k++dl A+d l+ l+s++  +++a   g++
  KIR60580.1 253 agWNEIDARTQFATGKAAMAFAGSWQAGAIKKDNPEIEKVwgtFPipgPDGkpapAFAGGSDIALWQDSKKQDL-AWDYLTVLLSKQKDKEFASSLGFF 350
                 5444459999*********************9999888763333545734455689*****************9.************************ PP

                 BS-S-TTTHHHHHH-HHH. CS
   SBP_bac_8 263 pvnksaalspevkkdpalp 281
                 pv  ++    e+++d+ ++
  KIR60580.1 351 PVYSDLVGGGEYANDKIMA 369
                 *******999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3176.91
//
Query:       KIR60581.1  [L=328]
Description: sugar ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-17   62.6  17.5    3.9e-17   62.6  17.5    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   1.4     0.033     6e+02      43     118 ..      77     106 ..      18     111 .. 0.51
   2 !   62.6  17.5   2.2e-21   3.9e-17       1     177 [.     109     318 ..     105     324 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.033
  BPD_transp_1  43 f........vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilaf 118
                            ++ ++l                                                      +n++  +++ ++l++
    KIR60581.1  77 NyaeilgdpFFRTVL------------------------------------------------------RNTVLFAAANVVLTM 106
                   044444444444444......................................................444444444444443 PP

  == domain 2  score: 62.6 bits;  conditional E-value: 2.2e-21
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf...............................vilsilghlilp.viillllsaa 65 
                   g+l+G+l+  + +++   ++  ++ + +++P +   i++ ++f                                ++++   ++++ + ++++++++
    KIR60581.1 109 GTLVGLLLN-RLGRRMATFVASCVMLAWATPALTGTIVWKWLFddtsglvtwlfnalpdglsnalfgradwtgyGWFNSPL-MFFSiLTLVVVWHSF 203
                   455566666.************************9999999999999999999***************9998865554444.44443789999**** PP

  BPD_transp_1  66 pyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis.....ngg 157
                   p++ + + a+l+s+p++l eaar++Ga++w++f+k+++P++ p++  +++l+ ++ ++ ++    l+  +G +++ +  +++y y+e+      +g+
    KIR60581.1 204 PFIAVSVLAGLKSVPSELHEAARVDGAGPWKVFWKITFPLLRPVFGILVVLSTIWDFKVFTQQFVLA--GGTQDRPTFMLSIYSYAEAFspppkYGL 298
                   ********************************************99999999999999888887777..5678888888888888888888***888 PP

  BPD_transp_1 158 vlalviavlllnlvadilqr 177
                    +a+++++ l++lv+  l+ 
    KIR60581.1 299 GAAIAVILTLILLVVTGLYV 318
                   88888888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2389.18
//
Query:       KIR60582.1  [L=214]
Description: molybdenum cofactor biosysynthesis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-20   73.7   0.0    1.9e-20   73.2   0.0    1.2  1  MOSC      MOSC domain
    3.8e-06   26.7   0.2    6.6e-06   25.9   0.2    1.4  1  3-alpha   3-alpha domain


Domain annotation for each model (and alignments):
>> MOSC  MOSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   2.1e-24   1.9e-20       2     131 .]      52     163 ..      51     163 .. 0.93

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 2.1e-24
                 XX---GGGGSEEEEETHHHHHHHHHS..GGGGG-STTTT--SEEE.S-.......-TTT-BTT-E.EEETT.....................EE----T CS
        MOSC   2 rkihggdekavllisresldalneelkegrsveldpgrfreNivv.ggaaafeEdtwkelrigdrrfrlggacsRcqmvnvdqetga.....rprepck 94 
                 r +hgg+++ v+++++e+ +++++el  gr  +++pg+f+eN+++ ++       + +++ +g+r +++g+               a     +pr+pc+
  KIR60582.1  52 RAHHGGPDQIVYAYAEEDAAWWAAEL--GR--DIRPGAFGENLTTyAV-------DVTGAVVGER-WQIGT---------------AllevtKPRTPCR 123
                 689***********************..77..7************999.......**********.****8...............335567******* PP

                 HHHHH...TTHHHHHHHHT---EEEEEEE-EEEETTS-EE CS
        MOSC  95 tlakf...rrvdkrvkgkgrfGvylrvleegtvrvGdeve 131
                 t+a f   +++ kr++ +   G+ylrvl+eg+v +Gd+ve
  KIR60582.1 124 TFAGFwgvPDLIKRFTVRAAPGAYLRVLREGEVGAGDPVE 163
                 ****76**99999*************************96 PP

>> 3-alpha  3-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.2   7.4e-10   6.6e-06      14      43 ..     182     211 ..     172     211 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 7.4e-10
                 ---HHHHHHHHTSTT--HHHHHHHHHHHHH CS
     3-alpha  14 kldrealrrllelpaLspsWrktfekRLes 43 
                 +l++e l rll++p+L++s r+++++RL++
  KIR60582.1 182 TLEPELLPRLLDVPELPESLRRKVARRLAT 211
                 7899************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       178  (0.00992805); expected 358.6 (0.02)
Passed bias filter:                      158  (0.00881254); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1568.89
//
Query:       KIR60583.1  [L=300]
Description: phytanoyl-CoA dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-16   61.3   0.3    2.3e-16   60.7   0.3    1.3  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)
  ------ inclusion threshold ------
      0.073   12.8   0.0       0.13   12.0   0.0    1.4  1  Cupin_2   Cupin domain


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.3   2.6e-20   2.3e-16       1     211 []      21     222 ..      21     222 .. 0.78

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 2.6e-20
                 HHHHSEEEETTSS-HHHHHHHHHHHHHHHHHCHTTCCSEEEEECEEESTTCCCEECCCHHCHHHHTTHHHHHHHHHHHHTSCEEEEEEEEEEEEE...E CS
        PhyH   1 feedGylviegflsaeevealraeiealldralesgdkidfffeekaaadedglleksinkvghflhprkvadlvrailgqdvyvaavlqsmyqd...i 96 
                 f+e+G+l+++++l+++  +al ++++++   ++e++ k  + ++++ +    g+le+++ + + + hp  +   +  + + + y    ++ ++ d    
  KIR60583.1  21 FHEQGFLLLRNVLTEDHRAALEEAVDRV---YAEEKAKGNTTKDGTLHLL--GFLERDELFGQLLTHPIAFPYMWGLAGW-NIYT---HHNHL-DvtpP 109
                 89*************************9...8899999999999999999..99999***********555544444444.4443...33333.22233 PP

                 EE-TTTCB-EEEEE-SGGGSTEES.........GCCEEEEEEESS-B-TT.BT-EEEETTGGGS-CCGTCCHHCSGCCTTSCCCTTTGHGSCEEEE.BT CS
        PhyH  97 fkqpkiGgevqpwHqDstflptdp.........eesvvgvwialedatee.nGclrfiPGSHkweegplrrrlpeddteaeddeakkedeeeavpvevk 185
                 + +p+  +    wHqD ++ + dp         +  ++ v++ l d +e+ +G++ +iPGSH+w   p+    p d t       +++d e++v+++ +
  KIR60583.1 110 ALEPE-KPY-WGWHQDGYRQNSDPetmdpnlprPMFSLKVAYVLSDLSETgRGATKVIPGSHLWNSLPR----PADLTV------HNPDPEGTVEITAN 196
                 33442.444.5**********555555457766677777********99769************55543....333333......447889******** PP

                 TTEEEEEETTSEEEE-TB.SSSXEEE CS
        PhyH 186 aGdavlfhgrllHgsgaNrsdksRra 211
                 +Gda++f+ r +H  ++N+s+ +R++
  KIR60583.1 197 PGDAFIFDRRQWHSRSTNLSNITRKM 222
                 *********************99985 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.4e-05      0.13      36      57 ..     190     211 ..     180     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
                 TEEEEEETTEEEEE-TT-EEEE CS
     Cupin_2  36 geeveleaGdsvyfpagtpHrf 57 
                   e++ ++Gd+++f++ ++H  
  KIR60583.1 190 TVEITANPGDAFIFDRRQWHSR 211
                 458999**************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2143.00
//
Query:       KIR60584.1  [L=260]
Description: enoyl-CoA hydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-50  170.9   0.0    3.6e-50  170.6   0.0    1.0  1  ECH_1     Enoyl-CoA hydratase/isomerase
    1.7e-27   96.8   0.2    2.3e-27   96.4   0.2    1.3  1  ECH_2     Enoyl-CoA hydratase/isomerase
  ------ inclusion threshold ------
        1.9    8.5   5.7        4.6    7.2   0.0    2.9  3  SPDY      Domain of unknown function (DUF317)


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.6   0.0   6.1e-54   3.6e-50       3     248 ..      13     256 ..      11     258 .. 0.96

  Alignments for each domain:
  == domain 1  score: 170.6 bits;  conditional E-value: 6.1e-54
                 ETTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHCHHHHHHHCCHHHHHHHHHHSSSEEEEEE-SEEET CS
       ECH_1   3 eagvaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeekakqallkeevlelwtklytvpkpviaavnGaaig 101
                   gv  ++l+ P++ Nals  l+tEl++ l+ +  d +vr+vvL   + +F++Gadlke a+  +a  +++   + + + ++ ++pkpv+a v G a +
  KIR60584.1  13 ARGVTTLTLDSPHNRNALSTPLMTELLAGLAAAVADDAVRVVVLDHTGPVFCSGADLKETAAA-YASGTVPAGMLGDVLAAVWECPKPVVARVAGPARA 110
                 5799**********************************************************6.8********************************** PP

                 HHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHHHSCHHHHHH CS
       ECH_1 102 GGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaeklaekspaalrq 200
                 GGl l  a+D++i+a++a f+ +e+++G+ip++    +l+r  + ++A e+ l+g+ + +  a+++Glv  +vp++ l      +++ l++ +p+al+ 
  KIR60584.1 111 GGLGLIAAADLAICAQEATFAFTEVRIGVIPAVISATVLPRLAP-RAAAELYLTGDTFDGRRAAEIGLVTSAVPADALDAAVARACASLVRGAPNALAG 208
                 *******************************8888888887665.667799************************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHHHHHHHHTCSH--- CS
       ECH_1 201 lkealnakledalaeqleaeaklfestfskddikeGlqaflEkrkpef 248
                 +ke l+++    l ++++  a l + +f +d+ +eG+ af Ekr++++
  KIR60584.1 209 AKELLRRPPAADLRAGVAELAALSTGFFLSDEGREGVLAFREKRDASW 256
                 **********************************************99 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.2   3.9e-31   2.3e-27       2     186 ..      17     196 ..      16     257 .. 0.89

  Alignments for each domain:
  == domain 1  score: 96.4 bits;  conditional E-value: 3.9e-31
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEET CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivmG 100
                 +++tL+ p++ NaLs++++++l + l +  +dd+v++vvl+ +g   fC+G D+++ + a  +g+  +        ++ +++ ++pkpvva + G +  
  KIR60584.1  17 TTLTLDSPHNRNALSTPLMTELLAGLAAAVADDAVRVVVLDHTG-PVFCSGADLKETAAAYASGTVPA----GMLGDVLAAVWECPKPVVARVAGPARA 110
                 689***************************************88.8*****************98773....44446788999**************** PP

                 HHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSSTTHHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHT CS
       ECH_2 101 gGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpgelGlylalTGarlkgadalaaglathyvpseklealeeaLae 186
                 gG+Gl + + + +  ++++fA  E++IG++P v    +L+rl  + +  l lTG++++g+ a ++gl t  vp+++l+a  ++ ++
  KIR60584.1 111 GGLGLIAAADLAICAQEATFAFTEVRIGVIPAVISATVLPRLAPRAAAELYLTGDTFDGRRAAEIGLVTSAVPADALDAAVARACA 196
                 *****************************************************************************887766554 PP

>> SPDY  Domain of unknown function (DUF317)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.4     0.016        96      47      60 ..      37      50 ..      31      51 .. 0.89
   2 ?    7.2   0.0   0.00077       4.6      38      62 .]      75     100 ..      72     100 .. 0.92
   3 ?   -2.2   0.1      0.68     4e+03      42      54 ..     180     192 ..     179     203 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.016
        SPDY 47 elvaaftaaLadpa 60
                el+a+++aa+ad+a
  KIR60584.1 37 ELLAGLAAAVADDA 50
                9**********985 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00077
        SPDY  38 atFtaatPaelvaaftaaL.adpapv 62 
                 a++++++Pa  + +++aa+   p+pv
  KIR60584.1  75 AYASGTVPAGMLGDVLAAVwECPKPV 100
                 9******************8888886 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.68
        SPDY  42 aatPaelvaafta 54 
                 +a+Pa+++ a +a
  KIR60584.1 180 SAVPADALDAAVA 192
                 6788877766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2015.30
//
Query:       KIR60585.1  [L=207]
Description: hypothetical protein TK50_21940 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-26   91.2   4.0    4.8e-26   91.0   4.0    1.0  1  DUF4870   Domain of unknown function (DUF4870)


Domain annotation for each model (and alignments):
>> DUF4870  Domain of unknown function (DUF4870)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   4.0   2.7e-30   4.8e-26       1     110 []      98     206 ..      98     206 .. 0.96

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 2.7e-30
     DUF4870   1 ernlaalihlsalsklli..plgniilPlviwllkkdksefvdeqgkealNFqislliysiilivlsllvligflllllllllllnlvlviiaaikane 97 
                 ++++ +++h+ + + +++  +++++++Pl+ +l++ ++s+ v++++  alNFq+ ++++++i+++l +++l+g+  l+ + ++++ +++ i+a ikane
  KIR60585.1  98 DKTWVLVAHFGGAAGMFLggGVLGWLAPLIALLARGNQSPTVRAHAVAALNFQLLWSVIALIGWIL-TCILVGL--LIGFGAMIVGIIFGIVAGIKANE 193
                 79***********777766699********************************************.9*****9..999******************** PP

     DUF4870  98 geeyrypltirfi 110
                 g +yryp+t+++i
  KIR60585.1 194 GSPYRYPMTVNLI 206
                 **********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 1754.33
//
Query:       KIR60586.1  [L=340]
Description: HrcA family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-62  209.8   0.4    5.8e-62  209.5   0.4    1.1  1  HrcA            HrcA protein C terminal domain
    2.7e-06   27.0   0.0    2.6e-05   23.9   0.0    2.4  2  HTH_DeoR        DeoR-like helix-turn-helix domain
    0.00088   19.2   0.0     0.0025   17.7   0.0    1.8  1  HTH_11          HTH domain
  ------ inclusion threshold ------
      0.017   14.8   0.0      0.069   12.8   0.0    2.0  2  HrcA_DNA-bdg    Winged helix-turn-helix transcription repress
      0.026   14.1   0.0       0.31   10.6   0.0    2.7  3  HTH_24          Winged helix-turn-helix DNA-binding
      0.029   14.4   1.2        0.1   12.7   0.0    2.5  3  HTH_20          Helix-turn-helix domain
      0.083   12.7   0.0      0.083   12.7   0.0    4.3  4  HTH_IclR        IclR helix-turn-helix domain
      0.094   12.4   0.0       0.14   11.9   0.0    1.2  1  DUF1131         Protein of unknown function (DUF1131)
      0.094   12.9   0.0       0.26   11.5   0.0    1.8  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.14   12.0   0.0       0.36   10.8   0.0    1.8  1  RuvB_C          RuvB C-terminal winged helix domain


Domain annotation for each model (and alignments):
>> HrcA  HrcA protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.5   0.4   3.3e-65   5.8e-62       1     220 []     104     323 ..     104     323 .. 0.93

  Alignments for each domain:
  == domain 1  score: 209.5 bits;  conditional E-value: 3.3e-65
        HrcA   1 edllqraarlLseltgyvavvlapslskaklkhielvplsssrllvvlvtdsgrvenrllelpeevseeelaklsnllneklagltlseiaerlreekl 99 
                 +d+++r++rlL++lt++vavv++psl++++++h+elvp+s++rl++v++ d+grve+rl+elp++vs +++ +l++l+nekl+g +lse    ++ + +
  KIR60586.1 104 DDVVHRTVRLLAQLTRQVAVVQYPSLARSSVRHLELVPISTTRLMLVMIADTGRVEQRLVELPAPVSADDVTDLRRLVNEKLVGSRLSETPPLVQAL-V 201
                 79*************************************999***********************************************99977777.6 PP

        HrcA 100 keelseyeelleqllealeeale..rseelyvsGtsnllrqpefsdd.eklrellelleekvvllkllselsdaegvsvrIGsEneleelkdcSvVtat 195
                 +e + ++   +++l ++l e+l   ++e++ ++Gt+nl+r   + d+  +lr++le+lee+vv+lkl+ e++ +++ +v IG+Ene+++l+ +SvV+++
  KIR60586.1 202 EESSPHLRGTMTTLSTVLLETLVerHEERIALAGTANLTRGGLL-DFqGSLRPILEALEEEVVMLKLIGEAE-STTTRVLIGDENEIDNLRAASVVSTG 298
                 6666676799******9988888777888***********9977.888********************6654.4569********************** PP

        HrcA 196 YglggepvgtigviGPtrMdYakvi 220
                 Yg g +++g +gv+GPtrMdY+ +i
  KIR60586.1 299 YGPGATALGGLGVVGPTRMDYPGTI 323
                 **********************998 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.5e-08   2.6e-05       7      49 ..      17      61 ..      12      67 .. 0.81
   2 ?   -0.3   0.0       0.5     9e+02      35      56 ..     255     276 ..     255     277 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.5e-08
    HTH_DeoR  7 ellkqqgklsveelve..llgvSeaTiRRDLneLeeqglltRthG 49
                ++++ q  +  + lve  +lgvS+aT+R+D++ Lee+g ++  h 
  KIR60586.1 17 DYVATQEPVGSKALVErhQLGVSPATVRNDMAVLEEEGYIRQPHT 61
                67777777777888873359*******************998885 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.5
    HTH_DeoR  35 LneLeeqglltRthGGavsiss 56 
                 L+ Lee++++ +  G a+s ++
  KIR60586.1 255 LEALEEEVVMLKLIGEAESTTT 276
                 6789*********999998765 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.4e-06    0.0025      24      44 ..      35      55 ..      11      58 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.4e-06
      HTH_11 24 eLnvSrrtvrrdIkaLeelgv 44
                +L+vS +tvr+d++ Lee g+
  KIR60586.1 35 QLGVSPATVRNDMAVLEEEGY 55
                6******************96 PP

>> HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor, HrcA DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.9e-05     0.069       8      71 ..       9      73 ..       3      78 .. 0.85
   2 ?   -2.9   0.0       3.1   5.5e+03      42      59 ..     284     301 ..     283     305 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.9e-05
  HrcA_DNA-bdg  8 eilqaLielyrkkkravKgeeiAe..vlkrneGtvRNqlqsLkalgLvegvpGPkGGYkPtlkaye 71
                   +l+a++e y   +++v ++ + e  +l+  + tvRN + +L   g +  +p  + G +Pt + y+
    KIR60586.1  9 AVLRAIVEDYVATQEPVGSKALVErhQLGVSPATVRNDMAVLEEEGYIR-QPHTSAGRVPTDRGYR 73
                  69*******************987336999************9999987.5777888889888886 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.1
  HrcA_DNA-bdg  42 NqlqsLkalgLvegvpGP 59 
                   N +  L+a  +v++  GP
    KIR60586.1 284 NEIDNLRAASVVSTGYGP 301
                   778889999998888887 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.56     1e+03       1      19 [.       3      21 ..       3      24 .. 0.83
   2 ?   10.6   0.0   0.00017      0.31      26      48 .]      35      57 ..      34      57 .. 0.95
   3 ?   -2.9   0.0       2.9   5.1e+03      31      42 ..     326     337 ..     325     339 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.56
      HTH_24  1 ldetdrkILelLqknpris 19
                ld+ ++++L+++ ++   +
  KIR60586.1  3 LDDRKLAVLRAIVEDYVAT 21
                79999*******9986555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00017
      HTH_24 26 rlglSpstvnrrlkrLeeeGlIk 48
                +lg+Sp+tv+  +  LeeeG+I+
  KIR60586.1 35 QLGVSPATVRNDMAVLEEEGYIR 57
                79********************7 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.9
      HTH_24  31 pstvnrrlkrLe 42 
                 + +v r++ +L 
  KIR60586.1 326 VRAVARYVGELL 337
                 56899**99996 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.7e-05       0.1      16      56 ..      11      58 ..       5      62 .. 0.76
   2 ?   -2.3   0.1       2.8     5e+03      12      19 ..      90      97 ..      88     135 .. 0.69
   3 ?   -3.0   0.0       4.6   8.2e+03      34      45 ..     208     219 ..     198     226 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.7e-05
                HHHH.....STCTTB-HHHHHHHH..TS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 16 lraL.....araegltaselaerl..dlskntlsyHLrvLeeagLvev 56
                lra+     a+ e++  ++l er   ++s++t+++ ++vLee g++++
  KIR60586.1 11 LRAIvedyvATQEPVGSKALVERHqlGVSPATVRNDMAVLEEEGYIRQ 58
                555555555677777777777776669******************986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.8
                HHHHHHHH CS
      HTH_20 12 RrrilraL 19
                Rr+i+r L
  KIR60586.1 90 RRAIERFL 97
                78888877 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.6
                 HTS-HHHHHHHH CS
      HTH_20  34 ldlskntlsyHL 45 
                 l+++++tls  L
  KIR60586.1 208 LRGTMTTLSTVL 219
                 678888888655 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.7e-05     0.083      26      50 ..      34      58 ..       5      60 .. 0.90
   2 ?    0.7   0.5      0.26   4.6e+02       2      16 ..     107     121 ..     106     137 .. 0.63
   3 ?   -2.4   0.0       2.5   4.5e+03      31      50 ..     141     160 ..     140     161 .. 0.77
   4 ?   -2.8   0.4       3.2   5.7e+03      38      45 ..     219     226 ..     211     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.7e-05
                HHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR 26 rrtglpkStvhRlLqtLvelGyveq 50
                +++g++++tv++ ++ L+e+Gy++q
  KIR60586.1 34 HQLGVSPATVRNDMAVLEEEGYIRQ 58
                489*********************9 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.26
                 HHHHHHHHCT-CTTB CS
    HTH_IclR   2 ldRalaiLdalaeap 16 
                 + R++++L +l+++ 
  KIR60586.1 107 VHRTVRLLAQLTRQV 121
                 567777777777764 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.5
                 -HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR  31 pkStvhRlLqtLvelGyveq 50 
                 p St++ +L      G veq
  KIR60586.1 141 PISTTRLMLVMIADTGRVEQ 160
                 77899888888888887777 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 3.2
                 HHHHHHHT CS
    HTH_IclR  38 lLqtLvel 45 
                 lL tLve+
  KIR60586.1 219 LLETLVER 226
                 89999985 PP

>> DUF1131  Protein of unknown function (DUF1131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.9e-05      0.14      41      92 ..     232     284 ..     205     298 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.9e-05
     DUF1131  41 aldgdyrl.rsGmetenGkivsifqalkddkvklvisGqekgkveridvldke 92 
                 al g+ +l r+G+   +G++  i++al+++ v l++ G+++++ +r+ + d++
  KIR60586.1 232 ALAGTANLtRGGLLDFQGSLRPILEALEEEVVMLKLIGEAESTTTRVLIGDEN 284
                 5555555438999999*******************************999874 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00015      0.26      19      53 ..      21      57 ..       5      63 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
                    HHSSB-HHHHHHH..HTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 19 ekkvvktkdlaer..LnvspssVsemlkkLekdGyve 53
                    ++++v+ k l er  L+vsp++V   +  Le++Gy+ 
      KIR60586.1 21 TQEPVGSKALVERhqLGVSPATVRNDMAVLEEEGYIR 57
                    566677777776555********************86 PP

>> RuvB_C  RuvB C-terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0002      0.36       2      71 ..       1      75 [.       1      76 [. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
                T---HHHHHHHHHHHHT...TT--B-HHHHH..HHTT--HHHHHHTTHHHHHHTTSEEE..ETTEEEE-HHHHHHH CS
      RuvB_C  2 lGLdeldikyLkllkekf..kggpvglktla..ailgeeketiedviEPyLlkeglIer..tsrGRilTkkglkyl 71
                +GLd+    +L+++ e +   ++pvg k+l+  + lg++  t+ + +  +L +eg+I++  ts GR  T++g++++
  KIR60586.1  1 MGLDDRKLAVLRAIVEDYvaTQEPVGSKALVerHQLGVSPATVRNDM-AVLEEEGYIRQphTSAGRVPTDRGYRLF 75
                69****************66689*******84457999******999.69999****9555***********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2656.50
//
Query:       KIR60587.1  [L=387]
Description: molecular chaperone DnaJ [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-38  131.1   0.0    4.1e-38  130.8   0.0    1.1  1  DnaJ_C           DnaJ C terminal domain
    1.4e-26   92.3   0.7    2.2e-26   91.7   0.7    1.3  1  DnaJ             DnaJ domain
    2.2e-11   44.0  13.3    3.6e-11   43.3  13.3    1.4  1  DnaJ_CXXCXGXG    DnaJ central domain
    0.00022   21.1   9.7      0.092   12.7   2.4    2.5  2  Anti-TRAP        Tryptophan RNA-binding attenuator protein in
  ------ inclusion threshold ------
        8.1    6.9   8.8        6.2    7.3   0.9    2.8  3  Lar_restr_allev  Restriction alleviation protein Lar
        8.4    6.5   7.3    3.4e+02    1.3   7.3    2.2  1  HypA             Hydrogenase/urease nickel incorporation, met


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   0.0   1.4e-41   4.1e-38       4     148 .]     130     344 ..     127     344 .. 0.95

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 1.4e-41
                 EEEE-HHHHHH-.EEE.EEEE.........................................................................TEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx..................................................................xxxxxxxxx RF
      DnaJ_C   4 eleisleelykGktkkikikrnvi..................................................................kkekktlev 36 
                 +le++l+e ++G++  i+++  v                                                                   ++ +++l+v
  KIR60587.1 130 RLELDLHETAFGVEAPITVDTAVLcttcsgagtaagthlatceacggrgevqsvqrtflgqvvsarpctvcqgygttiphpcptctgdgrVRTRRSLTV 228
                 799****************99888*****************************************************************6555559*** PP

                 EE-TT--TT-EEEETT-SS..SS..S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEEEEEE-SS-EEEEEE...--TT-EEEETT-S-EET CS
                 xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx RF
      DnaJ_C  37 kipaGikdgqkirlegeGd..eeggepGDlivtikvkphpvFkrkgndlyveveislaeallGgklevptldgkvklki...tqpgevlrikgkGmpkl 130
                 kipaG++dg++irl+++G+  ++gg +GDl+v+i+++ph+v++rkg+dl+++v+++++ a+lG++l+++tld + ++++   tqpg++lr++ +G+p+l
  KIR60587.1 229 KIPAGVEDGMRIRLAQQGEvgPGGGTAGDLYVEIHERPHDVYSRKGDDLHCRVTVPMTAAALGTRLTIKTLDSEETVDVkagTQPGSTLRLRARGVPHL 327
                 *******************65555***********************************************9999998888****************** PP

                 ...TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxxxxxx RF
      DnaJ_C 131 kkpgkrGdlyvevkvefP 148
                 + +++rGdlyv+++v +P
  KIR60587.1 328 R-GTGRGDLYVHLDVRTP 344
                 8.*************999 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.7   7.5e-30   2.2e-26       1      63 []      10      71 ..      10      71 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 7.5e-30
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                dyY iLgvs++as+deIk+aYrkla+++HPD n  dpea+ekFk in+AyevLsd++kR++ D
  KIR60587.1 10 DYYGILGVSREASDDEIKRAYRKLARQFHPDVN-PDPEAQEKFKDINAAYEVLSDDRKRQIVD 71
                8********************************.99************************987 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3  13.3   1.2e-14   3.6e-11       1      67 []     154     218 ..     154     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 1.2e-14
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgk.kktCktCkGsGvvreeqkt.lgpfvqqsqstCpeCeGtGkvikekdkCkkCkGkg 67 
                    C++C+G g+++g+   tC++C+G+G+v++ q+t lg++v  s ++C+ C+G G++i   ++C++C G+g
     KIR60587.1 154 CTTCSGAGTAAGThLATCEACGGRGEVQSVQRTfLGQVV--SARPCTVCQGYGTTI--PHPCPTCTGDG 218
                    ********988666999********88888877577766..679************..889******86 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.8   4.5e-05      0.13      11      42 ..     152     180 ..     146     188 .. 0.83
   2 !   12.7   2.4   3.1e-05     0.092      12      45 ..     196     223 ..     194     227 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.5e-05
                 EE-TTTTTTSEETTE......E-TTTTTSSEE CS
   Anti-TRAP  11 tkCdaCngsGkiepeeprasleCPkCsGkgli 42 
                 + C +C g+G ++++ + a   C +C+G+g +
  KIR60587.1 152 VLCTTCSGAGTAAGT-HLA--TCEACGGRGEV 180
                 57*************.555..7******9965 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.1e-05
                 E-TTTTTTSEETTE......E-TTTTTSSEEE-H CS
   Anti-TRAP  12 kCdaCngsGkiepeeprasleCPkCsGkglipTa 45 
                 +C  C+g G   p       +CP C G g + T 
  KIR60587.1 196 PCTVCQGYGTTIPH------PCPTCTGDGRVRTR 223
                 8*************......********998885 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.7   1.4e+04      28      35 ..     151     158 ..     138     163 .. 0.71
   2 ?    7.3   0.9    0.0021       6.2       3      36 ..     168     199 ..     166     209 .. 0.74
   3 ?    4.2   0.4     0.019        57       4      19 ..     209     224 ..     206     232 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.7
  Lar_restr_allev  28 cvyCadCg 35 
                       v C+ C 
       KIR60587.1 151 AVLCTTCS 158
                      56677775 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0021
  Lar_restr_allev   3 LkpCPfCggravlersqrvvaeigqcvyCadCga 36 
                      L  C  Cggr++++  qr+    gq+v+   C +
       KIR60587.1 168 LATCEACGGRGEVQSVQRTFL--GQVVSARPCTV 199
                      889************999975..45444333544 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.019
  Lar_restr_allev   4 kpCPfCggravlersq 19 
                       pCP C g++ + ++ 
       KIR60587.1 209 HPCPTCTGDGRVRTRR 224
                      59******98776665 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   7.3      0.11   3.4e+02      71      84 ..     169     182 ..     133     230 .. 0.59

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.11
                 EEETTTS-EEECHH CS
        HypA  71 vrCreCgkefelee 84 
                 ++C+ Cg ++e+++
  KIR60587.1 169 ATCEACGGRGEVQS 182
                 34444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2541.52
//
Query:       KIR60588.1  [L=244]
Description: 16S rRNA methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-57  193.2   0.0    4.3e-57  193.1   0.0    1.0  1  Methyltrans_RNA  RNA methyltransferase


Domain annotation for each model (and alignments):
>> Methyltrans_RNA  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.1   0.0   2.4e-61   4.3e-57       2     224 ..      18     237 ..      17     239 .. 0.95

  Alignments for each domain:
  == domain 1  score: 193.1 bits;  conditional E-value: 2.4e-61
                      EEEHHHHHHHHTTTT--TT-EEEEEESSSEEEEEEEEEEESSEEEEEEEEEEE---SSSSEEEEEEE--SSHHHHHHHHHHHHTT-SEEEEEE- CS
  Methyltrans_RNA   2 sltdeeahHlvkVlRlkegdeiklfdgdgkeyeaeieeiskkkvtvkilekeeenkespekitlaqalpkgdklelilqkatElGvseivplis 95 
                      +l + e hH+++V Rl+ g+e+ l dg+g+ + a ++++ +  +++++ ++  ++++ p+ ++++q++ kgd+ el++q +tE+Gv+eivp+ +
       KIR60588.1  18 TLGGPEGHHAATVQRLRTGEELLLADGRGGTAAAVVTAVGRGALDLRVTSRGYVDAPVPR-LVVVQGIAKGDRGELAVQAMTEVGVDEIVPWAA 110
                      577889***************************************************999.********************************* PP

                      TTSSS...HHHHHHHHHHHHHHHHHHHHHHT-SS--EEEEEE..EHHHHHHHCSCCEEEEEEETTSSEBGGGSSHCCHTHHCSEEEEEE--TT- CS
  Methyltrans_RNA  96 ersvvkldekkkdkklerwqkilieAaeQsgrtrlpevkepi..slkelleelkeadlklildeeekksleelsekkkelkevkvlliiGPEGG 187
                      +rsv+++ +++     e+w + ++eAa+Q++r++lp v  +   s++++ ++++ a ++++l+ee+++ l+ ++   ++    +++l++GPEGG
       KIR60588.1 111 ARSVAQWRGDRGVRAREKWAATAREAAKQARRAWLPVVAGAPdeSTATVARRIAGAAAAFVLHEEAQEPLTAAKLPDAG----EIVLVVGPEGG 200
                      **************************************98865488888899999999*******88887777777766....9********** PP

                      --HHHHHHHHHTTCEEEB-SSS---HHHHHHHHHHHH CS
  Methyltrans_RNA 188 fsekEiellkeagfkpvsLgpriLRteTAalaalsal 224
                      ++++E+ ++++ag++pv+Lgp++LRt+TA++aal +l
       KIR60588.1 201 ITDAEVTAFTQAGARPVRLGPHVLRTSTAGVAALCVL 237
                      *********************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1608.71
//
Query:       KIR60589.1  [L=253]
Description: 3-oxoacyl-ACP reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-52  176.2   1.4    9.6e-52  175.9   1.4    1.0  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    7.4e-50  169.1   0.0    9.2e-50  168.8   0.0    1.1  1  adh_short       short chain dehydrogenase
    2.5e-08   34.0   0.1    5.7e-08   32.9   0.1    1.5  1  KR              KR domain
    0.00016   21.3   0.1     0.0023   17.4   0.1    2.1  1  Epimerase       NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
        0.1   12.2   0.4       0.18   11.3   0.4    1.4  1  NmrA            NmrA-like family
       0.21   11.6   1.9       0.38   10.8   0.6    2.1  2  HTH_29          Winged helix-turn helix
       0.48   10.3   3.9       0.78    9.6   3.9    1.6  1  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.9   1.4   3.7e-55   9.6e-52       1     231 [.      10     247 ..      10     247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 175.9 bits;  conditional E-value: 3.7e-55
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE...EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG..CSS-GGGH-H CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae...vlecDVtdeeqvealveevvekfgklDilvnnagiapk..lkgpfletsr 92 
                   Ga +gIGra+A ++a+ G +v+++ ++  +   +e+l +el+ +   v+++D +d+e+v+ +v+++++++g+lD+lvnnag+  +     p+  +s 
    KIR60589.1  10 GASRGIGRAVAARFAAGGDRVAIHHRGSGE--LAERLRAELPGDghvVVRADLADPEAVRVMVDDAAARLGGLDVLVNNAGVYGErnAPHPVFGASY 104
                   999***********************9998..5666666665444436**********************************999884445554444 PP

                   ....HHHHHHHHHHTHHHHHHHHHHHHHCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT CS
  adh_short_C2  93 ....eefdraldvnlyslfllakaalplmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg 184
                         ++++l++nl+++++++  a+++m+ + g+ivn+ss ga r+ p++ ayga+Ka+l+al ++lAv l+p+gi v +v+pg+++T+++++   
    KIR60589.1 105 aewqRRWRQVLETNLTGAANVTWCAAQHMRGRgGRIVNVSSRGAFRGEPEQPAYGASKAGLNALGQSLAVALAPYGIAVATVAPGFVETDMTTEHL- 200
                   111156789******************887554**********************************************************88776. PP

                   HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEEST CS
  adh_short_C2 185 fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDg 231
                   + e  + ++a++p+gr+++pee+a+a+ +Las ea++ +G+++  +g
    KIR60589.1 201 AGEGGATIRAQSPFGRVARPEEIAAAVHWLASAEAEWASGTIVDLNG 247
                   688999***********************************987765 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   0.0   3.6e-53   9.2e-50       2     190 ..       5     199 ..       4     204 .. 0.89

  Alignments for each domain:
  == domain 1  score: 168.8 bits;  conditional E-value: 3.6e-53
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHH.HHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.......S--SS CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekl.eevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.......tgsgp 92 
                 +vlvtGas+GIGra+a ++a+ G +v++  r + +l e++ +el   g+  +++++D++d e+v+ +v++a+++lg+ldvLvnNAG+       + +  
  KIR60589.1   5 AVLVTGASRGIGRAVAARFAAGGDRVAIHHRGSGELaERLRAELP--GDGHVVVRADLADPEAVRVMVDDAAARLGGLDVLVNNAGVygernapHPVFG 101
                 79**************************77666555044555555..66799*************************************9988744444 PP

                 GGGCSHHH.HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short  93 fselseee.wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                 +s  + ++ w++v+e+Nltg+ ++t  ++++m  +++GrIvnvsS  ++ + ++++aY+AsKa++++l +sla  lap+gi v +vaPG+v+Tdm++e 
  KIR60589.1 102 ASYAEWQRrWRQVLETNLTGAANVTWCAAQHMR-GRGGRIVNVSSRGAFRGEPEQPAYGASKAGLNALGQSLAVALAPYGIAVATVAPGFVETDMTTEH 199
                 455555556**********************76.*************************************************************9986 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.1   2.2e-11   5.7e-08       3     162 ..       6     171 ..       5     187 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.2e-11
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------....-T CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdk....ll 97 
                 +l+tG+  g+G+++a   a+ g  ++++  R   + e +++l ael   g    vv+aD++d++av+ +++++ a+ + +   ++ Agv  ++    ++
  KIR60589.1   6 VLVTGASRGIGRAVAARFAAGGD-RVAIHHRG--SGELAERLRAELPGDGH--VVVRADLADPEAVRVMVDDAAARLGGLDVLVNNAGVYGERnaphPV 99 
                 79***************998765.57777777..56666767777777665..56899*******************************9876112234 PP

                 TT--....HHHHHHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR  98 eemt....aedleqvlapKvkGawnLhelled...esldffvlfSSiagllgsagqanYaaaNaflDalaey 162
                    +    + +++qvl+  ++Ga n+  + ++    +   +v +SS +++ g+++q +Y a  a l+al ++
  KIR60589.1 100 FGASyaewQRRWRQVLETNLTGAANVTWCAAQhmrGRGGRIVNVSSRGAFRGEPEQPAYGASKAGLNALGQS 171
                 44441111456899*************9999877778899************************99999775 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   9.1e-07    0.0023       1      64 [.       6      74 ..       6     187 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 9.1e-07
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.....EEEE--TT-HHHHHHHHHHHT CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.....elveldltdrsalerlfkeeq 64
                +lVtGa+  iG+a++ ++++ g +v    r s + ++ ++++l      +v++dl d++a++ ++++ +
  KIR60589.1  6 VLVTGASRGIGRAVAARFAAGGDRVAIHHRGSGELAERLRAELpgdghVVVRADLADPEAVRVMVDDAA 74
                79*****************988777666666555555555555****99**********9998888754 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   7.1e-05      0.18       1      65 [.       6      73 ..       6      77 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.1e-05
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S...-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT- CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdt...kselakslkeaGvelvkgdlddkeslvealkgv 65
                +lv+Ga+  +G++v++ +++ g +v +  R +    + l ++l   G ++v +dl d e ++  ++++
  KIR60589.1  6 VLVTGASRGIGRAVAARFAAGGDRVAIHHRGSgelAERLRAELPGDGHVVVRADLADPEAVRVMVDDA 73
                79****************************98887888899999***************999888877 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6   0.00015      0.38      16      60 ..       3      47 ..       1      48 [. 0.92
   2 ?   -2.5   0.0       2.1   5.4e+03      43      55 ..     129     142 ..     127     146 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_29 16 sqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprnrlsee 60
                s+++ ++g sr   + +  rf +gG + ++++r+sg +++rl +e
  KIR60589.1  3 SRAVLVTGASRGIGRAVAARFAAGGDRVAIHHRGSGELAERLRAE 47
                78999********************999********999999876 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.1
      HTH_29  43 alld.rrrsgrprn 55 
                 a+++ r r+gr  n
  KIR60589.1 129 AAQHmRGRGGRIVN 142
                 57788888888766 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.9    0.0003      0.78       1      63 [.      10      75 ..      10     227 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0003
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH.....HHHCTTTCEEEE--TT-CCHHHHHHTT-SE CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpekla.....eleaeeglevvegdvtdvedlaealkgada 63
                    GA+ ++Gr+++++ +a g  +v +  R + +la     el+  +g  vv +d+ d+e+++  +++a a
      KIR60589.1 10 GASRGIGRAVAARFAAGG-DRVAIHHRGSGELAerlraELP-GDGHVVVRADLADPEAVRVMVDDAAA 75
                    9**************995.8999999996665422222455.47889*********999998885433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1840.54
//
Query:       KIR60590.1  [L=116]
Description: histidine triad (HIT) protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-23   81.8   0.0    5.1e-23   81.6   0.0    1.0  1  HIT       HIT domain
    2.1e-17   63.6   0.0    2.4e-17   63.4   0.0    1.0  1  DcpS_C    Scavenger mRNA decapping enzyme C-term binding


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   5.7e-27   5.1e-23       2      95 ..      13     107 ..      12     110 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 5.7e-27
                 GCC-CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCC...HHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-EEEEEEC CS
         HIT   2 keipstvvyeddlvlafldidpkapghlLvipkkhlselhdlt...eeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlHiHvipr 95 
                 +eip+tvv e+  +laf+didpkap+h+Lvipk+h++++  l    ++  ++ll+++  va++++     +g+r++ n+ga +gq+v+h+H Hv+++
  KIR60590.1  13 GEIPATVVRETATTLAFRDIDPKAPVHVLVIPKEHYADVATLGqgdPALAGELLATAAAVAEDEGL--LGDGFRLMFNTGAYGGQEVFHVHAHVLGG 107
                 69*************************************9999999*******************9..679************************97 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   2.7e-21   2.4e-17       2     101 ..       5     106 ..       4     113 .. 0.96

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 2.7e-21
                 -HHHHHHTTSS-B-EEEE-SSEEEEE-SS-SSSEEEEEEESS---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T..-EEEEE--SCCCT--S-S--EE CS
      DcpS_C   2 wvfnilakgkepervvyedekfvvlkDikpkaklhllvipkrdikslrdLtkehlpllkemrekakkvieekyne..vdaeelrvgvhyqPsvyhlHlH 98 
                 ++f++++ g++p++vv e+ ++++++Di+pka++h+lvipk++ +++  L + +  l  e+  +a +v+e++     + +  +++g    + v+h+H H
  KIR60590.1   5 CLFCRIVAGEIPATVVRETATTLAFRDIDPKAPVHVLVIPKEHYADVATLGQGDPALAGELLATAAAVAEDEGLLgdGFRLMFNTGAYGGQEVFHVHAH 103
                 99**********************************************************************976889999****************** PP

                 EEE CS
      DcpS_C  99 vis 101
                 v+ 
  KIR60590.1 104 VLG 106
                 *86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 847.23
//
Query:       KIR60591.1  [L=456]
Description: penicillin-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-51  174.2  11.1    5.2e-51  173.9  11.1    1.1  1  Beta-lactamase  Beta-lactamase
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.24   10.8   0.0    1.5  2  Peptidase_S11   D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.9  11.1   5.8e-55   5.2e-51       3     298 ..      10     305 ..       8     341 .. 0.82

  Alignments for each domain:
  == domain 1  score: 173.9 bits;  conditional E-value: 5.8e-55
                     HHHHHHHHHTTESEEEEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTSTTCTTGGGTTEBHH CS
  Beta-lactamase   3 rlvrelmaqggipGvavavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylPefagpgkgkiTlr 97 
                     r+vr+ +a+g++p va+a  r ++++++  +G    ++   + ++tlfri+SvtKtfta++v+q+ ++G+ldLddpV  +l   + p+ g++T+r
      KIR60591.1  10 RMVRRVQAEGRVPAVAAALHRADRPLWTCEAG--GTGNDTALGPQTLFRIGSVTKTFTAVLVMQCRDAGLLDLDDPVGAHL---DVPAHGELTVR 99 
                     68999999******************987776..5777779****************************************...8889999**** PP

                     HHHTTHSSCSSSSTSTTCTSHHHTH..HHHHHHHHHSBSSSSTTSCEE-SHHHHHHHHHHHHHHHTSHHHHHHHHHTTTTTTSTTEESSTTGGGG CS
  Beta-lactamase  98 dLltHtsGlpdlfasdlleeaaada..aellralatlppkyapGtkwgYsntgygllgellekvtgrsleqllreeilrpLgmkdtelgppesgd 190
                      Ll+HtsGl ++ +++++++    +  +ell+ la+++ + +p  ++ Ysn+g+ +lg+l++++ g ++++ l +++l+pLg++ t+  p +++ 
      KIR60591.1 100 RLLSHTSGLQRE-PHGDVWDTLLAPgaDELLADLARAERVLPPARRFHYSNLGMAVLGQLVARLRGGTWAEVLADRVLAPLGLTATTDRPGPAA- 192
                     *********999.8888888888888*********************************************************99987776666. PP

                     GGBEEEEEEETCEEECSCETTHHHHCTTTBEEEEHHHHHHHH......HHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECC CS
  Beta-lactamase 191 prdaagytgngpearappanlpaeaegagglistardlarfl......glalegglllsaetlaqltaklssgttrpagiraglglGwvladktg 279
                      ++  + +  ++ea+++p+ + a+ ++ag l+sta+d+ar++        ++  g++l+++tl ++  +  + t+   + +ag+glG+ l +++ 
      KIR60591.1 193 -ATGFLVDAYSDEAHPEPPTDFAAVGPAGQLWSTATDMARWAafladpAALDPTGAVLAPATLDEM-RWPLTVTD-ETTWGAGFGLGLILLPQGE 284
                     .5556665566666666666666666****************755555444444555555555554.33333333.3344566688888888888 PP

                     HTEEEEEEE..STEEEEEEEE CS
  Beta-lactamase 280 apgtfghtG..ggygtyvfvd 298
                         +gh+G  +g+ ++v+ +
      KIR60591.1 285 RVVHVGHDGamPGFLAAVYGR 305
                     8********998888877655 PP

>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.7e-05      0.24      35      66 ..      54      85 ..      47     102 .. 0.87
   2 ?   -3.1   0.0      0.48   4.3e+03     152     163 ..     222     233 ..     213     237 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.7e-05
                   -BE-GGGHHHHHHHHHHHHHHTTSS-TTSEEE CS
  Peptidase_S11 35 vveiASltKlmTaylvlealkkgklkeddkvt 66
                     +i S+tK  Ta+lv++  ++g l++dd+v 
     KIR60591.1 54 LFRIGSVTKTFTAVLVMQCRDAGLLDLDDPVG 85
                   56899************************995 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.48
                    CBB-HHHHHHHH CS
  Peptidase_S11 152 qvssArdlaila 163
                    + s+A+d+a+ a
     KIR60591.1 222 LWSTATDMARWA 233
                    579******866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3204.86
//
Query:       KIR60592.1  [L=711]
Description: PhoH [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-88  295.4   0.5    4.9e-50  169.8   0.0    2.2  2  PhoH           PhoH-like protein
    4.2e-10   39.8   0.0    5.4e-07   29.8   0.0    3.0  3  LAGLIDADG_3    LAGLIDADG-like domain
    8.9e-08   32.1   0.4    0.00047   19.9   0.0    2.3  2  AAA_30         AAA domain
    3.5e-06   27.4   0.0      0.075   13.4   0.0    2.3  2  AAA_19         AAA domain
     0.0014   18.4   0.0     0.0027   17.5   0.0    1.3  1  IstB_IS21      IstB-like ATP binding protein
     0.0016   18.7   0.0          5    7.4   0.0    3.3  3  AAA_22         AAA domain
     0.0044   16.7   0.0        2.8    7.5   0.0    2.3  2  Zot            Zonular occludens toxin (Zot)
     0.0099   16.2   0.2        0.2   12.0   0.0    2.6  2  Hint_2         Hint domain
  ------ inclusion threshold ------
       0.01   16.0   0.0      0.027   14.6   0.0    1.7  2  Hom_end        Homing endonuclease
      0.053   13.3   0.5       0.41   10.4   0.2    2.1  2  DEAD           DEAD/DEAH box helicase
      0.053   13.0   0.9          4    6.9   0.1    2.1  2  UvrD-helicase  UvrD/REP helicase N-terminal domain
      0.063   13.2   0.0       0.12   12.2   0.0    1.4  1  Hom_end_hint   Hom_end-associated Hint


Domain annotation for each model (and alignments):
>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.8   0.0   3.3e-53   4.9e-50       2     117 ..     118     233 ..     117     236 .. 0.99
   2 !  123.8   0.1   4.1e-39   6.2e-36     116     204 ..     589     677 ..     558     678 .. 0.95

  Alignments for each domain:
  == domain 1  score: 169.8 bits;  conditional E-value: 3.3e-53
                 ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHHHH CS
        PhoH   2 ikpktkeQkeylealkkndivfaiGpaGtGKtylavalavealkkkkvkriiltrpaveageelGflpgdleekvdpylrplydaLkdllgaekvekll 100
                 i+pkt +Qk+y++a+++++ivf+iGpaGtGKtyla+a av+al++k+v+riiltrpaveage+lGflpg+l+ek+dpylrplydaL+d+l+ e++ kl+
  KIR60592.1 118 IRPKTLGQKKYVDAIDAHTIVFGIGPAGTGKTYLAMAKAVQALQAKQVNRIILTRPAVEAGERLGFLPGTLNEKIDPYLRPLYDALHDMLDPETIPKLM 216
                 99************************************************************************************************* PP

                 HTTSEEEEEGGGGTT-- CS
        PhoH 101 ekgkievaplaymRGrT 117
                  +g+ievaplaymRGr 
  KIR60592.1 217 AAGTIEVAPLAYMRGRA 233
                 ***************95 PP

  == domain 2  score: 123.8 bits;  conditional E-value: 4.1e-39
                 --B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--------------THHHHHHTTT-TTEEEEE--GGG----HHHHHHHHHH CS
        PhoH 116 rTlndafvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlpkgkksGlaealevlknvegieivelkkkdvvRhplvkkivkay 204
                  Tlndaf+ilDEAQntt+eqmkmfltRlG++sk+vvtGdvtq+dlp g++sGl+ ++e+l+nve++++++l+++dvvRh+lv +iv+ay
  KIR60592.1 589 NTLNDAFIILDEAQNTTPEQMKMFLTRLGFGSKIVVTGDVTQVDLPGGTTSGLRVVREILENVEDVHFAQLSSSDVVRHRLVGEIVDAY 677
                 6**************************************************************************************99 PP

>> LAGLIDADG_3  LAGLIDADG-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0      0.01        15       9      44 ..     354     385 ..     351     393 .. 0.88
   2 !   29.8   0.0   3.6e-10   5.4e-07       1      61 [.     445     505 ..     445     525 .. 0.90
   3 ?   -1.1   0.0       1.6   2.4e+03      38      56 ..     607     625 ..     596     650 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.01
                  HHHHHCCECCECSTTTTSEEEEES-HHHHHHHHHHH CS
  LAGLIDADG_3   9 GlfdaDGsvskskkkgvsisltssskelledvqrlL 44 
                  Gl  +DGs+s + +      +++++ el+  + + L
   KIR60592.1 354 GLLLGDGSISCRTT----PAFSTADPELAVALDEAL 385
                  999**********7....7*********98877665 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 3.6e-10
                  HHHHHHHHHHHHHCCECCECSTTTTSEEEEES-HHHHHHHHHHHHHCT.HSCEEEEEEE-S CS
  LAGLIDADG_3   1 evkaafLrGlfdaDGsvskskkkgvsisltssskelledvqrlLlrlGIestiyekkkakg 61 
                  +v +a L+Gl d+DG  +++ +++ ++ ++++s +l +dv +l + lG ++t++ +  +++
   KIR60592.1 445 DVRLAVLQGLLDTDGGPVVQAGRTCRVQYATTSPRLRDDVVYLAQSLGGVATWRVREAEGR 505
                  57899******************999*****************************944443 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.6
                  HHHHHHHHHCT.HSCEEEE CS
  LAGLIDADG_3  38 edvqrlLlrlGIestiyek 56 
                  e+++  L rlG  s+i  +
   KIR60592.1 607 EQMKMFLTRLGFGSKIVVT 625
                  68889999******99776 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.1e-07   0.00047       5      67 ..     124     186 ..     122     239 .. 0.82
   2 !   10.0   0.1   0.00035      0.52      88     128 ..     592     631 ..     563     668 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.1e-07
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKtt.alkalreaweaa.ggrviglAptgkaAkvLaeelg 67 
                 +Q++ v+a+ +++  +++  GpAGtGKt+ a++++++a++a+   r+i+  p  +a ++L+   g
  KIR60592.1 124 GQKKYVDAIDAHT--IVFGIGPAGTGKTYlAMAKAVQALQAKqVNRIILTRPAVEAGERLGFLPG 186
                 6888888775555..9************8468999999999956999999999999999986544 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00035
      AAA_30  88 pgtllivDEagmvdtkqlaallkaaekagakvilvGDerQl 128
                 ++  +i DEa  +  +q++ +l+++   g k+++ GD  Q 
  KIR60592.1 592 NDAFIILDEAQNTTPEQMKMFLTRLGF-GSKIVVTGDVTQV 631
                 45899********************99.**********997 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00014       0.2       9      58 ..     134     181 ..     125     237 .. 0.82
   2 !   13.4   0.0     5e-05     0.075      95     141 ..     586     631 ..     463     635 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakel 58 
                 ++++++ ++++GtGKT++ +++   ++++++v  ++i+l  ++  A ++l
  KIR60592.1 134 AHTIVFGIGPAGTGKTYLAMAKAVQALQAKQV--NRIILTRPAVEAGERL 181
                 3455666999********99998888888877..8999988888877776 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 5e-05
      AAA_19  95 eeekklqeeellivDEfqdvdelqyrLlkallgekkklllvGDpdQl 141
                  ++++l + + +i DE+q++++ q++++ + lg + k+++ GD  Q 
  KIR60592.1 586 VTHNTL-NDAFIILDEAQNTTPEQMKMFLTRLGFGSKIVVTGDVTQV 631
                 356777.7779**********6666666555558888*******995 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.8e-06    0.0027      42      74 ..     130     162 ..     112     172 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.8e-06
   IstB_IS21  42 sfiekkenivllGpsGvGKshlaialgveavra 74 
                 + i+++  +  +Gp+G+GK++la+a +v+a +a
  KIR60592.1 130 DAIDAHTIVFGIGPAGTGKTYLAMAKAVQALQA 162
                 446667777779*****************9985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0033         5       7      33 ..     137     163 ..     132     194 .. 0.75
   2 !    6.0   0.0    0.0093        14      90     116 ..     592     616 ..     578     627 .. 0.73
   3 ?    0.6   0.0      0.41   6.1e+02      43      80 ..     629     667 ..     623     681 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0033
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeea 33 
                 i++ +G++GtGKT+l+   + q+ +++
  KIR60592.1 137 IVFGIGPAGTGKTYLAMAKAVQALQAK 163
                 55558*********9977666665444 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0093
      AAA_22  90 avielliiDEaqhlrseealeeLrsll 116
                    +++i+DEaq+  ++e+++ + ++l
  KIR60592.1 592 N-DAFIILDEAQNT-TPEQMKMFLTRL 616
                 3.489********9.877777665554 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.41
      AAA_22  43 vfvtlpsst.sskdllrellralglelkaerlsseell.e 80 
                   v+lp++t s   + re+l+++++ + a  lss++++ +
  KIR60592.1 629 TQVDLPGGTtSGLRVVREILENVEDVHFA-QLSSSDVVrH 667
                 579999999777888*********99999.6666655523 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0     0.003       4.4       2      35 ..     137     172 ..     136     176 .. 0.79
   2 !    7.5   0.0    0.0019       2.8      58      98 ..     570     610 ..     541     675 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.003
         Zot   2 islvtGapGsgKtsgavkkdllp..alkegRkiitn 35 
                 i++  G+ G+gKt+ a+ k ++   a++  R+i t+
  KIR60592.1 137 IVFGIGPAGTGKTYLAMAKAVQAlqAKQVNRIILTR 172
                 78999************9965543255559999885 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0019
         Zot  58 iridnpegaetlkefakwatidkgallviDEcqeifpvrak 98 
                 i++  +++    + f     + ++a++++DE+q++ p+++k
  KIR60592.1 570 IQVAAEDSLYVTDDFLVTHNTLNDAFIILDEAQNTTPEQMK 610
                 55556777777788888888779**********99887765 PP

>> Hint_2  Hint domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.28   4.3e+02       6      28 ..      13      35 ..      11      64 .. 0.85
   2 !   12.0   0.0   0.00013       0.2       6      39 ..     237     270 ..     235     285 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.28
      Hint_2  6 gtliatpeGevaveeLrvGdlVv 28
                 t+i+ p+ ++ v+ L +Gd+++
  KIR60592.1 13 QTRITVPDSKIMVNLLGAGDEIL 35
                59******************997 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00013
      Hint_2   6 gtliatpeGevaveeLrvGdlVvtadgglqpvrw 39 
                 ++++ tpeG ++  +LrvGdlV+  +g++ pv+ 
  KIR60592.1 237 DARVLTPEGFRPFGSLRVGDLVIGSNGTPTPVIG 270
                 6799************************999975 PP

>> Hom_end  Homing endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         9   1.3e+04      22      38 ..      42      55 ..      42      67 .. 0.76
   2 ?   14.6   0.0   1.8e-05     0.027       2      70 ..     435     505 ..     434     515 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9
     Hom_end 22 vdsdgyvkkekedsatv 38
                vdsd +v+ +   ++t+
  KIR60592.1 42 VDSDVHVRGN---EITI 55
                7999999988...5555 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.8e-05
     Hom_end   2 ipsflaseaievREaFlaGLvdsdgyvkkekedsatvk..tedksvmegivklarsLGikasvktkeekid 70 
                 +p+  + +++ vR a l GL d+dg    +  +++ v+  t+++++ +++v la+sLG  a+   +e++ +
  KIR60592.1 435 VPEVYRNNSLDVRLAVLQGLLDTDGGPVVQAGRTCRVQyaTTSPRLRDDVVYLAQSLGGVATWRVREAEGR 505
                 67777888999999**********987777677666653388999*************9999999888755 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00027      0.41       4      56 ..     125     174 ..     122     181 .. 0.85
   2 ?    0.6   0.0      0.29   4.3e+02     121     144 ..     592     615 ..     571     621 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
                 HHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   4 QaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePt 56 
                 Q++ +++i     v++ ++ G+GKT  ++  ++q++   + k+ +++++  P 
  KIR60592.1 125 QKKYVDAIDAHTIVFGIGPAGTGKTYLAMAKAVQAL---QAKQVNRIILTRPA 174
                 8899999999999***********************...46777777777775 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.29
                 TEEEEEEETHHHHHHTTTHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 121 qvrflVlDEadrlldqgfsdfinr 144
                 +  f++lDEa++   ++++ f+ r
  KIR60592.1 592 NDAFIILDEAQNTTPEQMKMFLTR 615
                 4469******99988877777765 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.013        19      21      47 ..     143     167 ..     125     171 .. 0.82
   2 ?    6.9   0.1    0.0027         4     259     294 ..     595     630 ..     585     631 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.013
                    -TTSSHHHHHHHHHHHHHHTSSSTGGG CS
  UvrD-helicase  21 sAGsGKTfvlaerilrlikeeeiepdr 47 
                     AG+GKT+  +++ ++ +++++  ++r
     KIR60592.1 143 PAGTGKTYLAMAKAVQALQAKQ--VNR 167
                    69*****************995..444 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0027
                    EEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG CS
  UvrD-helicase 259 eiliDEyQDTnkiQyrilkllasgheelfmvGDpkQ 294
                    +i  DE+Q T + Q++++ +     +++++ GD+ Q
     KIR60592.1 595 FIILDEAQNTTPEQMKMFLTRLGFGSKIVVTGDVTQ 630
                    6899************997777777799999**998 PP

>> Hom_end_hint  Hom_end-associated Hint
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.4e-05      0.12      20      54 ..     251     286 ..     240     310 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.4e-05
                   G--TT-EEEBTTSSEEEEEE-.-EEEEEEEEEEE-S CS
                   xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
  Hom_end_hint  20 dievgekvmGkdGkpreVval.prgvetmYevkekt 54 
                   +++vg+ v+G +G+p  V+++ p+g +++Y+v+++ 
    KIR60592.1 251 SLRVGDLVIGSNGTPTPVIGVyPQGPKQVYRVTTQD 286
                   679****************9879*********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.50
# Mc/sec: 4275.87
//
Query:       KIR60593.1  [L=157]
Description: heat-shock protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-39  134.0   0.0    2.9e-39  133.8   0.0    1.0  1  UPF0054   Uncharacterized protein family UPF0054


Domain annotation for each model (and alignments):
>> UPF0054  Uncharacterized protein family UPF0054
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.0   1.6e-43   2.9e-39      12     126 ..      19     149 ..       9     151 .. 0.92

  Alignments for each domain:
  == domain 1  score: 133.8 bits;  conditional E-value: 1.6e-43
     UPF0054  12 kkvleealkkekle...evsvllvdneeirelnkeyrgkdkpTDVLSFpleeeeeeee.............lGDivisvekakeqaeeyghslerelaf 94 
                  +v+++al++++++   e+svllvd ++++eln++++g d pTDVL+Fp++e + ++              lGDiv+++e+a++qa  +ghs ++el++
  KIR60593.1  19 LAVARHALDEMGVNplaELSVLLVDIDYMTELNHRWMGGDGPTDVLAFPMDEGSVDHGpgesssaggepalLGDIVLCPEVAAKQAATAGHSSADELHL 117
                 34568999999999999***********************************99993368899************************************ PP

     UPF0054  95 llvHgllHllGYDHeeeeeekeMeekeeeile 126
                 l+vHg+lHllGYDH e+eee+eM+e++ ++l+
  KIR60593.1 118 LTVHGVLHLLGYDHAEPEEEREMFELQARLLA 149
                 *****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1039.05
//
Query:       KIR60594.1  [L=128]
Description: cytidine deaminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 953.74
//
Query:       KIR60595.1  [L=394]
Description: acyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-21   75.7  32.9    4.3e-21   75.3  32.9    1.1  1  Acyl_transf_3  Acyltransferase family


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3  32.9   2.4e-25   4.3e-21       2     334 ..       4     312 ..       3     317 .. 0.84

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 2.4e-25
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxx RF
  Acyl_transf_3   2 aylDllRgiAillVvflHaliayspdagrgspiqasqssqiaflggfgvplFFllSGfflaamlyrrrglsklikrRilrll..........ipll 87 
                     ylDllR++Ai+ Vv++H+                       +l   +++++F l G ++    +  r+ + ++ rR++rll          +p +
     KIR60595.1   4 RYLDLLRALAIVRVVVYHVTGWATL-----------------TLVFPAMSVMFALAGSLM--AASLDRSGPPAVGRRLRRLLpslwvlaavfVPAM 80 
                    79******************96654.................9*****************..7******************988888888888888 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3  88 iwllliillialvaghiqanasanvtlfdetkglmfllfefpatghlWfLwalfvlylllplllrllrkvrkshlllllilllllslvfirhelfg 183
                    + + l ++  +l   +++a++ an++ +              a ++ W+L  +++++ ++p+ l+l+r+ +++ ll+ ++ll+++ ++ ++++   
     KIR60595.1  81 LLTGLPLTPKVLLWAFPVADPPANYWGA-------------LALSVIWYLRDYLWFVFASPVALWLFRRAPWPTLLAPYALLATIEFGLFPAAP-- 161
                    8888888888888888888888888888.............9***********************************************99885.. PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 184 patsvgllplpsvlallfflfGalladaddrdrnlsrglkislllsllllalillalfgqtdggglvasvliqsaslllvslgimllllllfalps 279
                       +v+         +  ++  +ll+ a++ +  ++++  ++++++l+l +++ ++++++    g+  ++l+ ++   ++++++++l+ + +a +s
     KIR60595.1 162 ---TVLRE-------FGLYFGAWLLGFAHHDGLLRRTANRVLVPAALALGVAGAAWIATHP---GPRGYDLNDIPLGNALWSAAFILVAIGRAPAS 244
                    ...66665.......6666666777777777777777777777788888888888888888...******************************** PP

                    xxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 280 rsafk.......llrylgkiSygiYliHlpllmllqkllrdwgln......lgevlllvlllvvsviv 334
                      ++        ++ +l++ ++++Yl+H+p++++l+ l++  g        l   ++lv++lv +v++
     KIR60595.1 245 AAWVDrsavagrAVTVLNRRALTVYLWHMPFVVALTPLVDVVGWShqdpvgLAIRVVLVFALVGAVTA 312
                    **9999**********************************9955565676633333344444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.34
# Mc/sec: 3452.48
//
Query:       KIR60596.1  [L=271]
Description: UDP pyrophosphate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-71  240.8   0.0    1.4e-71  240.6   0.0    1.0  1  Prenyltransf  Putative undecaprenyl diphosphate synthase


Domain annotation for each model (and alignments):
>> Prenyltransf  Putative undecaprenyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.6   0.0   7.6e-76   1.4e-71       1     224 []      39     259 ..      39     259 .. 0.95

  Alignments for each domain:
  == domain 1  score: 240.6 bits;  conditional E-value: 7.6e-76
                   EE--HHHHHHHTT.S-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEEGGGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEESSGGGS-H CS
  Prenyltransf   1 imDGNrRwAkkrgleereeGhkaGaealkeilelclelgvkvvtvYafSteNfkRskeevdalmellkeellkeelkellkegvrvrviGdlellpe 97 
                   +mDGN+RwAk+rg ++r++Gh++G ++l +++e ++elg+ +++ YafSteN++Rs++ev++lm +  +++++++ ++l++ gvrv + G+  +l +
    KIR60596.1  39 VMDGNGRWAKERG-LPRTKGHEQGEHSLFDTIEGAIELGIPYLSAYAFSTENWRRSPDEVRFLMGFN-RDVIRRRRDQLVDLGVRVVWSGRAGRLWK 133
                   8************.88889**********************************************98.56999999********************* PP

                   HHHHHHHHHHHHHT.TTTSEEEEEEEEE-HHHHHHHHHHHHHHTT..SSSG.GGHSHHHHHCTSTT..TSSS-SEEEEESS--S-TTSSTTTTTT-E CS
  Prenyltransf  98 dvlealekaeeatkknnkklvlniavnYgsrdeiveavrelvkekseekkk.eeideetlekhlytakalpdpDlliRtsGeeRlSnFllwqlayse 193
                   +v ++l++aee+++ n++ l+l+++vnYg+++ei++a+ ++++++++ + + e+++e+t++k+ly   ++pd+Dl++R sGeeR+SnFllwq+ay+e
    KIR60596.1 134 SVISELQTAEEMSRGNST-LTLQFCVNYGGQAEIADAAAAIARDVAAGRLDpERVTEKTVAKYLYH-PEVPDVDLFLRPSGEERISNFLLWQTAYAE 228
                   **************6666.**********************999987776656779*********7.557*************************** PP

                   EEEESSSGGG--HHHHHHHHHHHHHCHHHTT CS
  Prenyltransf 194 lyfldvlWPdfskedllealleyqkrerrfg 224
                   l+fld+lWPdf++++l+ a + y++r+rrfg
    KIR60596.1 229 LVFLDTLWPDFDRRHLWYACELYAQRDRRFG 259
                   *****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1759.49
//
Query:       KIR60597.1  [L=61]
Description: hypothetical protein TK50_22020 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 461.39
//
Query:       KIR60598.1  [L=481]
Description: 6-phosphogluconate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.8e-122  407.6   0.0   3.5e-122  407.3   0.0    1.1  1  6PGD            6-phosphogluconate dehydrogenase, C-terminal 
      6e-50  169.5   0.0    9.8e-50  168.8   0.0    1.3  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    0.00018   22.0   0.0    0.00054   20.5   0.0    1.9  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    0.00029   20.9   0.0    0.00065   19.8   0.0    1.6  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
     0.0018   18.0   0.0      0.004   16.8   0.0    1.6  1  ApbA            Ketopantoate reductase PanE/ApbA
     0.0037   16.6   0.0     0.0063   15.9   0.0    1.3  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
  ------ inclusion threshold ------
       0.02   14.3   0.0      0.038   13.5   0.0    1.3  1  adh_short       short chain dehydrogenase
      0.023   14.6   0.0      0.039   13.8   0.0    1.3  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
       0.06   13.4   0.1       0.13   12.2   0.1    1.6  1  Glyco_transf_4  Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> 6PGD  6-phosphogluconate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  407.3   0.0  1.8e-125  3.5e-122       1     289 []     182     471 ..     182     471 .. 0.98

  Alignments for each domain:
  == domain 1  score: 407.3 bits;  conditional E-value: 1.8e-125
        6PGD   1 GhyVKmvHNGieygdmqliaEaydllkkvlglsneeiaevFeeWnkgelesyLieitakilrkkdeedgkplvdkilDkagqkGTgkwtvqealelgvp 99 
                 Gh+VKmvHNGiey+dmqliaEaydll+ +l+ s++eiae+F+eWn+geles+Lieita++l ++d+++g+ +vd++lD+a+qkGTg+wtvq+al+lg+p
  KIR60598.1 182 GHFVKMVHNGIEYADMQLIAEAYDLLRAGLSASPAEIAEIFREWNTGELESFLIEITAEVLGHTDAATGRAFVDVVLDQAEQKGTGRWTVQSALDLGIP 280
                 9************************************************************************************************** PP

        6PGD 100 vptiaeavfaRllSslkeervkaskll.keeeekeeedkeefiedlrkAlyaskivsYaqglellkaaskeygwnlnlaeiariWrgGCiIrakfldki 197
                 ++ iaea+faR lS +  +r++a++++ ++ e+ + ed+++f+ed+r+Al+askiv+Yaqg++ ++a s+ey+w+++l+  a+iWrgGCiIra+fld+i
  KIR60598.1 281 ITGIAEATFARSLSGHAGQREAARRAFgDAGEKWQVEDRDTFVEDVRRALLASKIVAYAQGFDHIRAGSSEYDWDIDLGGTATIWRGGCIIRARFLDRI 379
                 ***************************43455688999************************************************************* PP

        6PGD 198 keafeknpelenllldpefakelkealealrrvvalaveagipvpalsaalaYldslrserlpanliqaqrDyFGahtyervdkegkfhteW 289
                 kea++++pel++ll++p+fa+++++ ++++rrvv  a++ag+p+pa+s++laY+d+lr+erlpa+l+q+ rD FGahty+rvd++g+fht W
  KIR60598.1 380 KEAYDAEPELPSLLVAPYFAEAVSAGVPSWRRVVIDAARAGVPTPAFSSSLAYFDGLRAERLPAALLQGLRDNFGAHTYRRVDRDGSFHTLW 471
                 *******************************************************************************************9 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   0.0   4.9e-53   9.8e-50       1     152 [.       8     172 ..       8     177 .. 0.96

  Alignments for each domain:
  == domain 1  score: 168.8 bits;  conditional E-value: 4.9e-53
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.....EEE-SSHHHHHHHC...SEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.....akaaesieelvasl...dvvitmvkagkavdeviegllealkkgdilid 88 
                    +ig+ Gl+vMG+n+a+nl+++g++vav+nr++e++++lvae+     +++ es++++v sl   ++vi+mvkag+++d+vi++l++ l++gdi++d
     KIR60598.1   8 QIGVTGLAVMGRNLARNLARNGFTVAVHNRSPERTRSLVAEHgdegtFVPSESLADFVGSLerpRAVIIMVKAGAPTDAVIDELVPLLDEGDIIVD 103
                    69***************************************889999************************************************* PP

                    -S---HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEE......E CS
  NAD_binding_2  89 gstsspedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaiga......k 152
                    +++++++dtr+++++l++kgl+f +++VSGGeegA  G+ sim+GGs+e+++++ p++e+i+a      +
     KIR60598.1 104 CGNAHFADTRRREEALRAKGLHFSGTGVSGGEEGALLGP-SIMPGGSAESYAKLGPMFEKIAAqvdgtsC 172
                    ***************************************.***********************5655544 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.7e-07   0.00054       2      96 ..       9     106 ..       8     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.7e-07
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC......-EEECECHHHHHHH-SEEEE-S-HHH.HHHHHHHCGHHHHTTSE CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg......vkvtavdneeaaeeadvvvlavkped.veevlselakdalkgkl 90 
                    ig+ G   mg+ la++l+++g     + v  +r+pe+ ++l +e g      ++ +  d    +e+   v++ vk  + +++v++el + +++g +
     KIR60598.1   9 IGVTGLAVMGRNLARNLARNG---FTVAV-HNRSPERTRSLVAEHGdegtfvPSESLADFVGSLERPRAVIIMVKAGApTDAVIDELVPLLDEGDI 100
                    8999999**************...99995.5***************88877633333366777789999******97736779999999999**** PP

                    EEEESS CS
  F420_oxidored  91 visvla 96 
                    ++++ +
     KIR60598.1 101 IVDCGN 106
                    ***987 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.3e-07   0.00065      11      70 ..       5      62 ..       1      88 [. 0.82

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.3e-07
                  TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHH CS
  Shikimate_DH 11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelk 70
                  +++++ + G   m++ +a++L+++g++ v+v NR+ er ++l+ e+++e  ++++ e+l 
    KIR60598.1  5 ATAQIGVTGLAVMGRNLARNLARNGFT-VAVHNRSPERTRSLVAEHGDE-GTFVPSESLA 62
                  6789999********************.******************665.5555555554 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     2e-06     0.004       1     103 [.       9     106 ..       9     122 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2e-06
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHH.HHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGG.GHHHHHHHHGGGECTCE CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr.rlea.lkknGlrltseggeeilrppealsaeekselepidlvivtvKay.qteealeeikplldpnt 96 
                 i + G+  +G+ la +La++g +v + +rs+ r  + + ++G        e ++ p+e+l++    +le    vi+ vKa  +t+++++e+ plld+  
  KIR60598.1   9 IGVTGLAVMGRNLARNLARNGFTVAVHNRSPeRTRSlVAEHGD-------EGTFVPSESLADF-VGSLERPRAVIIMVKAGaPTDAVIDELVPLLDEGD 99 
                 7899999************************444444444444.......4555556666666.5899999*********7368888999*******99 PP

                 EEEEESS CS
        ApbA  97 vvlllqN 103
                 +++ + N
  KIR60598.1 100 IIVDCGN 106
                 9986555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.2e-06    0.0063      36     150 ..       6     128 ..       1     142 [. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.2e-06
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH......CHHHHTCEECSHHHH...HHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEE CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkee......eeeelgvelvsleel...laesDivslhlpltpetrhlinaeelakmkkgail 123
                     ++G+ Gl  +G+++a+ l+  g+ v +++rs+++++       +e + v  +sl ++   l++   v++++ + + t  +i+ e   ++ +g i+
    KIR60598.1   6 TAQIGVTGLAVMGRNLARNLARNGFTVAVHNRSPERTRslvaehGDEGTFVPSESLADFvgsLERPRAVIIMVKAGAPTDAVID-ELVPLLDEGDII 101
                   6789*****************************998777554221111112233444432226788899999999999988886.578999999999 PP

                   EESS-GGGB-HHHHHHHHHTTSCCEEE CS
  2-Hacid_dh_C 124 iNtaRGglvdeeaLleaLksgkiagaa 150
                   + ++ +   d++   eaL+++ ++  +
    KIR60598.1 102 VDCGNAHFADTRRREEALRAKGLHFSG 128
                   999999999998888888887776655 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.9e-05     0.038       5      48 ..      11      53 ..       8      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.9e-05
                EESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTT CS
   adh_short  5 vtGassGIGraiakelakeGakvvvvdrseekleevakelkeeg 48
                vtG +  +Gr++a++la++G++v+v +rs+e+ + +++e ++eg
  KIR60598.1 11 VTGLA-VMGRNLARNLARNGFTVAVHNRSPERTRSLVAEHGDEG 53
                66665.69*******************************99874 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     2e-05     0.039       1      39 [.       8      46 ..       8      59 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekal 39
                +++v G  +mG+ +a  +a++g++V + ++s+e+ ++  
  KIR60598.1  8 QIGVTGLAVMGRNLARNLARNGFTVAVHNRSPERTRSLV 46
                589***************************999887655 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   6.7e-05      0.13       2      61 ..      12      71 ..      11      85 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.7e-05
  Glyco_transf_4  2 GGverhvleLaraLarrGheVtvv..tpgddgpleeevelvvrvprvplpllkrllrslafl 61
                     G +++ ++Lar+Lar+G+ V v   +p++ + l  e  ++ +++ vp  +l+++  sl  +
      KIR60598.1 12 TGLAVMGRNLARNLARNGFTVAVHnrSPERTRSLVAE--HGDEGTFVPSESLADFVGSLERP 71
                    5899999*****************6666666666666..77777777766666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3402.97
//
Query:       KIR60599.1  [L=266]
Description: cobalt transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-25   89.0  10.2    4.4e-25   88.6  10.2    1.1  1  CbiQ      Cobalt transport protein


Domain annotation for each model (and alignments):
>> CbiQ  Cobalt transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6  10.2   2.4e-29   4.4e-25       8     211 ..      17     221 ..      11     227 .. 0.79

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 2.4e-29
                 -HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHTTS---.HHHHHHHCCCHCHHHHHH.HHHHE.......EECTTEEE...E-TTHHHHHHHHH CS
        CbiQ   8 ldprvkliwlfllllalvlapnlvtlliiiallllllllvilp.rvlaqalilpllflllgl.lillfqlittegefvfagggqisitseGllrgllla 104
                  +p  k+++ + +++ l     +v++ + i + l++l l +++  vla+ ++ pll+  +g+ ++l+++  +++g +++ +g  + +ts  ll++l la
  KIR60599.1  17 RNPVAKVAAALVFSFTLLATLDPVAPAVAIGVELAVLPLFGIRyGVLARRAA-PLLLSAAGIvVTLVLFAAERTGRTLVEAGP-VAVTSGVLLTALGLA 113
                 4555555555444444444444444444444444444444444456888888.555555555055555778899*********.9999999******** PP

                 HHHHHHHHHHHHHHHHS-HHHHHHHCCC.SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS...SHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        CbiQ 105 lRiltllslllllalTTppeeltssler.lgvPlelalillLayRfiflLleevqrikqAqklRlgds.klgirrslrslgkliaalflralkraerva 201
                 lR+l++ +  +++++TT+p +l+++l + +++P+ +a+ +l a+R+++lL +e q i  A+++R++d+ + +++r lr    +++al++ a++r+ r+a
  KIR60599.1 114 LRMLAVALPGVIVFATTDPTDLADALVQnARAPARFAIGALAAFRLVPLLGQEWQMISMARRARGVDAgRNPVAR-LRLFVSTAFALLVGAIRRGTRLA 211
                 ************************9875389*************************************8888888.*********************** PP

                 HHHHTTS-SS CS
        CbiQ 202 lAmeaRGYtg 211
                  Am+aRG++ 
  KIR60599.1 212 VAMDARGFDA 221
                 ********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1912.86
//
Query:       KIR60600.1  [L=478]
Description: ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-53  178.8   0.0    8.6e-27   94.3   0.0    2.1  2  ABC_tran        ABC transporter
    4.3e-17   62.9   0.1    6.7e-05   22.8   0.0    4.2  4  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    1.4e-09   37.6   0.6    4.7e-05   23.0   0.1    2.4  2  AAA_29          P-loop containing region of AAA domain
    8.7e-07   28.7   1.6      0.007   16.0   0.0    2.7  2  AAA_25          AAA domain
    1.6e-06   28.8   0.0      0.006   17.1   0.0    2.1  2  AAA_23          AAA domain
    3.4e-06   26.6   0.5     0.0068   15.8   0.0    2.6  3  Mg_chelatase    Magnesium chelatase, subunit ChlI
    5.5e-06   26.4   0.2     0.0071   16.3   0.1    2.4  2  RsgA_GTPase     RsgA GTPase
    5.8e-06   26.2   0.2      0.085   12.6   0.0    2.5  2  IstB_IS21       IstB-like ATP binding protein
    7.5e-06   26.4   8.2     0.0014   19.0   0.6    2.7  2  AAA_16          AAA ATPase domain
    1.7e-05   24.4   0.0       0.31   10.4   0.0    3.6  3  SMC_N           RecF/RecN/SMC N terminal domain
     0.0001   22.6   0.0       0.28   11.5   0.0    2.6  2  AAA_22          AAA domain
    0.00039   21.0   0.1       0.38   11.3   0.0    2.4  2  AAA_18          AAA domain
     0.0005   20.4   0.2       0.12   12.6   0.0    2.8  2  AAA_28          AAA domain
     0.0006   19.8   1.0       0.06   13.3   0.0    2.3  2  NACHT           NACHT domain
    0.00064   19.5   0.1       0.47   10.1   0.0    2.4  2  AAA_24          AAA domain
    0.00067   19.7   0.0      0.093   12.8   0.0    2.5  2  MMR_HSR1        50S ribosome-binding GTPase
     0.0008   19.6   0.7       0.92    9.8   0.0    3.9  2  SbcCD_C         Putative exonuclease SbcCD, C subunit
      0.001   19.2   2.0       0.45   10.7   0.1    3.0  3  AAA_33          AAA domain
     0.0011   19.0   1.4        0.1   12.6   0.1    2.4  2  AAA_5           AAA domain (dynein-related subfamily)
     0.0012   18.4   0.3       0.48   10.0   0.1    2.3  2  AAA_27          AAA domain
     0.0029   18.0   0.0       0.55   10.7   0.0    2.4  2  AAA             ATPase family associated with various cellula
     0.0042   16.8   1.9       0.12   12.1   0.0    2.6  2  AAA_30          AAA domain
     0.0042   17.4   0.0       0.66   10.4   0.0    2.2  2  RNA_helicase    RNA helicase
     0.0049   16.9   0.2       0.31   11.1   0.0    2.4  2  CbiA            CobQ/CobB/MinD/ParA nucleotide binding domain
     0.0094   15.5   0.0       0.31   10.5   0.0    2.1  2  AAA_7           P-loop containing dynein motor region
  ------ inclusion threshold ------
      0.014   15.5   0.4        5.5    7.0   0.0    2.1  2  DUF87           Helicase HerA, central domain
      0.025   14.5   0.1        1.8    8.5   0.0    3.0  3  NTPase_1        NTPase
      0.026   14.3   0.7        5.6    6.6   0.1    2.3  2  Cytidylate_kin  Cytidylate kinase
      0.031   13.9   0.3       0.53    9.9   0.0    2.1  2  SRP54           SRP54-type protein, GTPase domain
      0.039   14.2   0.0       0.97    9.7   0.0    2.3  2  Roc             Ras of Complex, Roc, domain of DAPkinase
      0.054   13.4   0.0       0.89    9.4   0.0    2.1  2  Rad17           Rad17 P-loop domain
      0.061   13.3   0.3       0.72    9.8   0.0    2.4  2  Phage_base_V    Type VI secretion system, phage-baseplate inj
      0.088   12.7   0.1        3.1    7.7   0.0    2.2  2  APS_kinase      Adenylylsulphate kinase
      0.088   11.8   1.2        1.4    7.9   0.1    2.5  2  MeaB            Methylmalonyl Co-A mutase-associated GTPase M
      0.092   11.8   0.0          1    8.4   0.0    2.1  2  T2SSE           Type II/IV secretion system protein
      0.097   11.6   0.7          3    6.6   0.1    2.1  2  AAA_PrkA        PrkA AAA domain
        0.1   12.6   0.0        9.3    6.3   0.0    2.3  2  AAA_14          AAA domain
       0.11   11.3   0.2       0.76    8.5   0.0    1.9  2  DLIC            Dynein light intermediate chain (DLIC)
       0.18   11.5   0.2        8.8    6.0   0.0    2.4  2  ATP_bind_1      Conserved hypothetical ATP binding protein
       0.21   11.3   0.1        1.5    8.5   0.0    2.2  2  PduV-EutP       Ethanolamine utilisation - propanediol utilis
       0.23   11.5   0.3        5.1    7.1   0.0    2.2  2  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
       0.28   10.8   1.6        1.6    8.3   0.1    2.3  2  cobW            CobW/HypB/UreG, nucleotide-binding domain
       0.29   10.8   0.0         13    5.3   0.0    2.1  2  AAA_15          AAA ATPase domain
       0.35   10.1   2.0        1.8    7.8   0.1    2.2  2  Zeta_toxin      Zeta toxin


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.0   2.1e-29   8.6e-27       2     137 .]      23     167 ..      22     167 .. 0.90
   2 !   82.7   0.0   8.5e-26   3.4e-23       4     136 ..     274     424 ..     271     425 .. 0.85

  Alignments for each domain:
  == domain 1  score: 94.3 bits;  conditional E-value: 2.1e-29
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSB.HHHH.............HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.............xxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlkeqeleslrkeigvlpqepqlfpelt.vren.............esd 82 
                 + v+l++++ge+v ++G++GaGKStLl++lagll++    +eG++++dg d +       r ++g+++q+p+ +  +  +++              e  
  KIR60600.1  23 RGVDLSVEAGERVLLLGPSGAGKSTLLAALAGLLSDdsgeQEGTVEVDGVDPRA-----DRDRVGIVFQDPESQLVMArCGDDvafglenrgvpagEIW 116
                 5799*******************************9777788888888777666.....9**********66665554366669**9999999999999 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  ++++al+++g ++++d++     + LSgG++qr+ala al+ +p llllDEpta
  KIR60600.1 117 PRVDEALRRVGFPYDRDRPT----AALSGGEQQRLALAGALAPRPGLLLLDEPTA 167
                 99*****************9....*****************************97 PP

  == domain 2  score: 82.7 bits;  conditional E-value: 8.5e-26
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE....EETTCEGGG....B-HHHCCHCEEEE-SS.--S-TTSBHHHH.............H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxx....xxxxxxxxxxxxxxxx.xxxxxxxxxxxx.............x RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGei....lldgkdlke....qeleslrkeigvlpqe.pqlfpeltvren.............e 80 
                  +l +++ge +a++G+nGaGKStL+ ll gll+p +G++    +l g+d  +     + + l ++ig ++q+ ++ f + tv+++             +
  KIR60600.1 274 TDLAVRAGEALAVLGPNGAGKSTLALLLGGLLRPGAGQVaatrELAGRDAATaphrWRAPALARRIGSVFQDpEHQFVTGTVYDElalgprrtghgeaA 372
                 67899**********************************6666455555555888899999***********76667777799999******9988655 PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  ++ ++ +l++l+l  l+  +    p++LSgG+ +r+++a al+++p+ll++DEpt
  KIR60600.1 373 VRATVDGLLDRLRLARLARAN----PYTLSGGEARRLSVATALATAPRLLVCDEPT 424
                 566688888888888855555....5*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.8e-06    0.0012       3      44 ..      36      76 ..      35      91 .. 0.79
   2 !   22.8   0.0   1.6e-07   6.7e-05     220     277 ..     122     179 ..      98     193 .. 0.78
   3 !   11.8   0.0   0.00037      0.15       3      24 ..     285     306 ..     284     348 .. 0.85
   4 ?    4.0   0.0     0.091        37     233     301 ..     393     458 ..     382     460 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.8e-06
      AAA_21  3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirk 44
                +l Gp g+GKS+LL al +l + d+++e++++++ +g+++r 
  KIR60600.1 36 LLLGPSGAGKSTLLAALAGLLS-DDSGEQEGTVEVDGVDPRA 76
                699*****************98.6666666666666666555 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.6e-07
      AAA_21 220 gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHP...kllrr 277
                  ++ +  ++++++p + lS G ++ lal+ al+ ++   +lll+DEp ++L+P   +l+rr
  KIR60600.1 122 ALRRVGFPYDRDRPTAALSGGEQQRLALAGALAPRP---GLLLLDEPTANLDPagaALVRR 179
                 4455556799999999******************99...**************76644444 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00037
      AAA_21   3 vliGpNgsGKSnLLdaldllar 24 
                 ++ GpNg+GKS+L  +l +l r
  KIR60600.1 285 AVLGPNGAGKSTLALLLGGLLR 306
                 578**********999999976 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.091
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpll 301
                 +++ lS G  r l ++tal+ a+   +ll+ DEp  g + +   +l++l+ el+++g  v+++TH+  +
  KIR60600.1 393 NPYTLSGGEARRLSVATALATAP---RLLVCDEPTFGQDRRTWLELVDLFAELRDGGHGVVAVTHDADF 458
                 67778888888889999999988...99999999988888666667777788888**********9755 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   1.2e-07   4.7e-05      16      47 ..      26      57 ..      20      63 .. 0.82
   2 !   12.4   0.0   0.00024     0.098      22      38 ..     280     297 ..     273     303 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.2e-07
      AAA_29 16 tieidlkgatlltGpsGsGKSTllDAiqalLv 47
                +++++  + +ll GpsG+GKSTll A++ lL 
  KIR60600.1 26 DLSVEAGERVLLLGPSGAGKSTLLAALAGLLS 57
                5666655599**************99998885 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00024
      AAA_29  22 kg.atlltGpsGsGKSTl 38 
                 +g a  + Gp+G+GKSTl
  KIR60600.1 280 AGeALAVLGPNGAGKSTL 297
                 3448899**********8 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.7e-05     0.007      22      55 ..      18      54 ..       7      80 .. 0.84
   2 !   11.0   0.4   0.00058      0.24      14      53 ..     263     301 ..     248     305 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.7e-05
      AAA_25 22 rrwlvkg...llpagelallaGapgtGKttlaldlal 55
                r w v+g    + age +ll G++g+GK+tl+  la 
  KIR60600.1 18 RAWAVRGvdlSVEAGERVLLLGPSGAGKSTLLAALAG 54
                67778875554799******************99985 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00058
      AAA_25  14 dlaapppprrwlvkgllpagelallaGapgtGKttlaldl 53 
                 d aa pp++      + +age  ++ G+ g+GK+tlal l
  KIR60600.1 263 DGAALPPRLAPTDLAV-RAGEALAVLGPNGAGKSTLALLL 301
                 4455555555444444.79******************977 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.5e-05     0.006      23      51 ..      36      64 ..      30      93 .. 0.83
   2 !    9.4   0.0    0.0033       1.4      24      35 ..     286     297 ..     284     302 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.5e-05
      AAA_23 23 lItGpNGaGKTTildAiklaLygetprls 51
                l+ Gp GaGK+T+l A+   L  ++++ +
  KIR60600.1 36 LLLGPSGAGKSTLLAALAGLLSDDSGEQE 64
                899***************99998876544 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0033
      AAA_23  24 ItGpNGaGKTTi 35 
                 + GpNGaGK+T+
  KIR60600.1 286 VLGPNGAGKSTL 297
                 57*********8 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.7e-05    0.0068      12      53 ..      22      63 ..      15      82 .. 0.82
   2 ?   -2.8   0.0       8.4   3.4e+03      88     114 ..     137     164 ..     134     168 .. 0.66
   3 !    8.1   0.1    0.0037       1.5      18      48 ..     277     307 ..     272     334 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.7e-05
  Mg_chelatase 12 kraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseee 53
                   r +++++  g  +ll+Gp+G+GK+ l ++l++ll++ s e+
    KIR60600.1 22 VRGVDLSVEAGERVLLLGPSGAGKSTLLAALAGLLSDDSGEQ 63
                  5667778888889**********************9876544 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 8.4
  Mg_chelatase  88 aalvGggskpkpGeisla.hnGvLfLDE 114
                   aal Gg ++    + +la + G+L+LDE
    KIR60600.1 137 AALSGGEQQRLALAGALApRPGLLLLDE 164
                   6777777755555555552459999998 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0037
  Mg_chelatase  18 aaaGgHnlllvGppGsGKtmlakrlpsllpp 48 
                   a+  g  l ++Gp G+GK+ la  l +ll p
    KIR60600.1 277 AVRAGEALAVLGPNGAGKSTLALLLGGLLRP 307
                   6666678999**************9999976 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.7e-05    0.0071      99     122 ..      32      55 ..      22      69 .. 0.83
   2 !    7.7   0.0    0.0077       3.1      99     121 ..     281     303 ..     274     329 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.7e-05
                  TSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpe 122
                  ++ ++l+G+SG+GKStL+ al++ 
   KIR60600.1  32 GERVLLLGPSGAGKSTLLAALAGL 55 
                  46789***************9875 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0077
                  TSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallp 121
                  ++  +++G+ G+GKStL   l +
   KIR60600.1 281 GEALAVLGPNGAGKSTLALLLGG 303
                  5678899*********9876655 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00021     0.085      44      68 ..      29      53 ..      16      59 .. 0.89
   2 !   10.8   0.0   0.00075       0.3      44      68 ..     278     302 ..     269     307 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00021
   IstB_IS21 44 iekkenivllGpsGvGKshlaialg 68
                +e+ e ++llGpsG+GKs l +al+
  KIR60600.1 29 VEAGERVLLLGPSGAGKSTLLAALA 53
                788999**************99997 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00075
   IstB_IS21  44 iekkenivllGpsGvGKshlaialg 68 
                 +++ e++++lGp G+GKs la  lg
  KIR60600.1 278 VRAGEALAVLGPNGAGKSTLALLLG 302
                 67899****************9887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.6   3.5e-06    0.0014      22      89 ..      32     107 ..      24     194 .. 0.55
   2 !   10.6   1.8    0.0014      0.56      20      99 ..     279     355 ..     274     470 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.5e-06
      AAA_16  22 grpelvllsGesGvGKsslvrellralekd....ggif.lrgkcdqlesaipysalaqalareellrqllde.......a 89 
                 g  e vll G+sG GKs+l+ +l+  l++d    +g + + g     ++++ ++ ++ +  +++l+ + + +        
  KIR60600.1  32 G--ERVLLLGPSGAGKSTLLAALAGLLSDDsgeqEGTVeVDGVDP--RADRDRVGIVFQDPESQLVMARCGDdvafgleN 107
                 3..689******************888888666523332222222..223334455555556677766666644444441 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0014
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawre 99 
                 r+g  e++ + G+ G GKs+l+  l   l + g+  ++++ +  +++++ ++  ++a a  + +  + +++e  ++     
  KIR60600.1 279 RAG--EALAVLGPNGAGKSTLALLLG-GLLRPGAGQVAATRELAGRDAATAPhRWRAPALARRIGSVFQDPEH-QFVTGTV 355
                 555..799**************7776.6777765555555555555655555555555444566666666333.3333333 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00076      0.31      28     182 ..      36     180 ..      25     202 .. 0.68
   2 ?    6.5   0.0     0.012       4.9      27      40 ..     284     297 ..     276     302 .. 0.87
   3 ?   -1.4   0.0       3.1   1.3e+03     134     153 ..     394     413 ..     346     425 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00076
                 EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHH.... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.... RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkke.... 122
                  ++Gp G+GKs ll A+  +L+++s       + +  +      +++++ +v i+f++++++         ++ r   +    + ++++ v   e    
  KIR60600.1  36 LLLGPSGAGKSTLLAALAGLLSDDSG------EQEGTVEVDGVDPRADRDRVGIVFQDPESQ--------LVMARCGDD--VAFGLENRGVPAGEiwpr 118
                 578999**********9999997776......334444444677888888888888888888........344444333..345555555555441111 PP

                 HHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHH CS
                 xxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvael 182
                 v e l+++g+  +      +LSgGe++ +ala  +A     +  l llDe  a+LD +  + v + 
  KIR60600.1 119 VDEALRRVGFPYDrdrptaALSGGEQQRLALAGALA----PRPGLLLLDEPTANLDPAGAALVRRA 180
                 566777777766677777788888888777776655....23458888888888888776666555 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.012
                 EEEEESTTSSHHHH CS
                 xxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnl 40 
                  a++GpNG+GKs l
  KIR60600.1 284 LAVLGPNGAGKSTL 297
                 589*********87 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 3.1
                 TTCS-HHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 134 kelLSgGektLvalaLlfAi 153
                 + +LSgGe   +++a  +A+
  KIR60600.1 394 PYTLSGGEARRLSVATALAT 413
                 4589***9998888888875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00068      0.28       9      30 ..      36      57 ..      31      94 .. 0.77
   2 !    8.3   0.0    0.0066       2.7       6      25 ..     282     301 ..     278     352 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00068
      AAA_22  9 vvtGesGtGKTtllrrlleqld 30
                ++ G+sG+GK+tll+ l+  l 
  KIR60600.1 36 LLLGPSGAGKSTLLAALAGLLS 57
                789*************998874 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0066
      AAA_22   6 gilvvtGesGtGKTtllrrl 25 
                   l+v G+ G+GK+tl+  l
  KIR60600.1 282 EALAVLGPNGAGKSTLALLL 301
                 5789************9776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00094      0.38       1      22 [.      35      56 ..      35      85 .. 0.86
   2 ?    7.4   0.0     0.015       6.3       3      19 ..     286     302 ..     284     335 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00094
      AAA_18  1 IlltGtpGvGKttlakeLskrl 22
                +ll G++G+GK+tl  +L+ +l
  KIR60600.1 35 VLLLGPSGAGKSTLLAALAGLL 56
                799*************998665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.015
      AAA_18   3 ltGtpGvGKttlakeLs 19 
                 + G+ G+GK+tla  L 
  KIR60600.1 286 VLGPNGAGKSTLALLLG 302
                 89***********9885 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00029      0.12       1      20 [.      34      53 ..      34      70 .. 0.85
   2 ?    4.9   0.0     0.069        28       3      19 ..     285     301 ..     283     334 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00029
      AAA_28  1 kivitGgestGKTtlleaLa 20
                ++ ++G++++GK+tll+aLa
  KIR60600.1 34 RVLLLGPSGAGKSTLLAALA 53
                689****************9 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.069
      AAA_28   3 vitGgestGKTtlleaL 19 
                 +++G+ ++GK+tl+  L
  KIR60600.1 285 AVLGPNGAGKSTLALLL 301
                 789**********9776 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00015      0.06       2      31 ..      34      63 ..      33      68 .. 0.86
   2 ?    5.0   0.2     0.051        21       3      17 ..     284     298 ..     282     313 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00015
                CEEEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaegklpq 31
                 v+l G++G GK+tLl+ la ++ ++  +q
  KIR60600.1 34 RVLLLGPSGAGKSTLLAALAGLLSDDSGEQ 63
                689*****************9998876655 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.051
                 EEEEC-TTTCHHHHH CS
       NACHT   3 vilqGeaGsGKTtLl 17 
                 +++ G++G GK+tL+
  KIR60600.1 284 LAVLGPNGAGKSTLA 298
                 6899**********8 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0012      0.47       3      22 ..      33      52 ..      31      70 .. 0.87
   2 ?    7.0   0.0     0.011       4.3       5      22 ..     284     301 ..     280     308 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0012
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                 ++l+ Gpsg+GK+tl++ l
  KIR60600.1 33 ERVLLLGPSGAGKSTLLAAL 52
                589*************9877 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.011
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +++ Gp+g+GK+tla+ l
  KIR60600.1 284 LAVLGPNGAGKSTLALLL 301
                 6899**********9876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00023     0.093       1      22 [.      34      55 ..      34      80 .. 0.82
   2 ?    4.2   0.0      0.11        43       3      16 ..     285     298 ..     283     325 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00023
                EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltge 22
                +v+++G + +GKStL+ al g 
  KIR60600.1 34 RVLLLGPSGAGKSTLLAALAGL 55
                689****************984 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.11
                 EEEESTTSSHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLi 16 
                 a++G   +GKStL 
  KIR60600.1 285 AVLGPNGAGKSTLA 298
                 899*********96 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0023      0.92      26      81 ..     132     174 ..     119     182 .. 0.74
   2 ?    3.7   0.1      0.18        73      31      51 ..     395     414 ..     387     440 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0023
     SbcCD_C  26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesi 81 
                  +r +++lSGGe+q l   ala al           p+++l++LDE  ++lD+  +
  KIR60600.1 132 RDRPTAALSGGEQQRL---ALAGAL----------APRPGLLLLDEPTANLDPAGA 174
                 5688999999999653...344333..........357899999999999998765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.18
     SbcCD_C  31 gtlSGGekqflaylalaaala 51 
                  tlSGGe+   +++a a+a a
  KIR60600.1 395 YTLSGGEA-RRLSVATALATA 414
                 58999999.444555554433 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1    0.0011      0.45       2      20 ..      35      53 ..      35      59 .. 0.89
   2 ?    6.2   0.1     0.027        11       4      16 ..     286     298 ..     284     318 .. 0.89
   3 ?   -1.0   0.0       4.5   1.8e+03      27      92 ..     374     439 ..     360     459 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0011
      AAA_33  2 vllvGlpGsGKstlaerll 20
                vll G++G+GKstl+  l+
  KIR60600.1 35 VLLLGPSGAGKSTLLAALA 53
                7899**********99887 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.027
      AAA_33   4 lvGlpGsGKstla 16 
                 + G++G+GKstla
  KIR60600.1 286 VLGPNGAGKSTLA 298
                 67*********98 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 4.5
      AAA_33  27 llssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrrer..arflkla 92 
                 + + d l++rl+     + + yt    ++++    +a+  ++a r ++ d + + +++r   +++ l+
  KIR60600.1 374 RATVDGLLDRLRLARLARANPYTLSGGEARRL--SVATALATAPRLLVCDEPTFGQDRRtwLELVDLF 439
                 55555555555555555555555544444443..4666788888888889888876555224455544 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   0.00025       0.1       2      23 ..      35      56 ..      34      68 .. 0.87
   2 ?    5.2   0.2     0.048        20       4      23 ..     286     305 ..     283     322 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00025
                EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5  2 vlLvGppGtgKselaerlaaal 23
                vlL+Gp+G gKs+l   la +l
  KIR60600.1 35 VLLLGPSGAGKSTLLAALAGLL 56
                8******************998 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.048
                 EE--SSSSHHHHHHHGGGGB CS
       AAA_5   4 LvGppGtgKselaerlaaal 23 
                 ++Gp G gKs+la  l  +l
  KIR60600.1 286 VLGPNGAGKSTLALLLGGLL 305
                 79***********9998777 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1    0.0012      0.48      20      50 ..      26      56 ..      21      58 .. 0.83
   2 ?    6.1   0.0     0.018       7.3      31      43 ..     286     298 ..     274     305 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0012
      AAA_27 20 dfsaeeadlhliyGpNEAGKstalrAisdll 50
                d+s e+ +  l++Gp  AGKst+l+A+  ll
  KIR60600.1 26 DLSVEAGERVLLLGPSGAGKSTLLAALAGLL 56
                666666666799***************9887 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.018
      AAA_27  31 iyGpNEAGKstal 43 
                 ++GpN AGKst+ 
  KIR60600.1 286 VLGPNGAGKSTLA 298
                 89*********75 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0013      0.55       1      23 [.      35      57 ..      35      93 .. 0.79
   2 ?    5.0   0.0     0.076        31       3      19 ..     286     302 ..     284     349 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0013
                EEEESSTTSSHHHHHHHHHHHHT CS
         AAA  1 vllyGppGtGKTllakavakelg 23
                vll Gp G GK++l  a+a  l+
  KIR60600.1 35 VLLLGPSGAGKSTLLAALAGLLS 57
                79*****************9874 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.076
                 EESSTTSSHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakava 19 
                 + Gp G GK++la  + 
  KIR60600.1 286 VLGPNGAGKSTLALLLG 302
                 78***********8776 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0    0.0003      0.12      21      46 ..      35      61 ..      25      77 .. 0.81
   2 ?    3.2   0.9      0.15        63      20      38 ..     283     301 ..     272     441 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0003
      AAA_30 21 avltGpAGtGKttalkalreaweaa.g 46
                ++l Gp G+GK+t+l+al+ ++ ++ g
  KIR60600.1 35 VLLLGPSGAGKSTLLAALAGLLSDDsG 61
                6899**************999887744 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.15
      AAA_30  20 vavltGpAGtGKttalkal 38 
                   ++ Gp G+GK+t+   l
  KIR60600.1 283 ALAVLGPNGAGKSTLALLL 301
                 67889********986555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0016      0.66       1      29 [.      35      63 ..      35      75 .. 0.83
   2 ?    4.8   0.0     0.087        35       3      16 ..     286     299 ..     284     308 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0016
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkklklk 29
                  ++l Gpsg GKStl   La  l+++++++
    KIR60600.1 35 VLLLGPSGAGKSTLLAALAGLLSDDSGEQ 63
                  5799*************999998887554 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.087
  RNA_helicase   3 lyGpsgeGKStlak 16 
                   + Gp+g GKStla 
    KIR60600.1 286 VLGPNGAGKSTLAL 299
                   78*********985 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00076      0.31       7      25 ..      40      58 ..      35      92 .. 0.89
   2 ?    3.4   0.2      0.19        77       9      24 ..     291     306 ..     285     314 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00076
                STTSSHHHHHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
        CbiA  7 kGGvGKTtlaanLaralar 25
                 +G+GK+tl+a+La +l++
  KIR60600.1 40 PSGAGKSTLLAALAGLLSD 58
                59***************98 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.19
                 TSSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxx RF
        CbiA   9 GvGKTtlaanLarala 24 
                 G+GK+tla+ L+ +l 
  KIR60600.1 291 GAGKSTLALLLGGLLR 306
                 99*********99987 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00077      0.31      27      54 ..      26      53 ..      23      62 .. 0.84
   2 ?    2.6   0.0       0.2        83      27      50 ..     275     298 ..     272     304 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00077
       AAA_7 27 elllknkkpvllvGptGtGKtviikdll 54
                +l ++++  vll Gp+G GK++++  l 
  KIR60600.1 26 DLSVEAGERVLLLGPSGAGKSTLLAALA 53
                6789999***************988765 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.2
       AAA_7  27 elllknkkpvllvGptGtGKtvii 50 
                 +l ++++  + + Gp G GK++++
  KIR60600.1 275 DLAVRAGEALAVLGPNGAGKSTLA 298
                 67788999999**********975 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.014       5.5      24      48 ..      33      57 ..      23      67 .. 0.80
   2 ?    6.6   0.1     0.018       7.5      26      45 ..     284     302 ..     273     312 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.014
       DUF87 24 rHlAilgsTGsGKSntvavLleell 48
                ++++ lg +G+GKS++ a L   l 
  KIR60600.1 33 ERVLLLGPSGAGKSTLLAALAGLLS 57
                67899************99976665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.018
       DUF87  26 lAilgsTGsGKSntvavLle 45 
                 lA+lg  G+GKS+++ +Ll 
  KIR60600.1 284 LAVLGPNGAGKSTLA-LLLG 302
                 8***********986.4555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0043       1.8       2      32 ..      35      65 ..      34      92 .. 0.83
   2 ?   -2.3   0.1       8.9   3.6e+03     114     144 ..     177     208 ..     174     212 .. 0.82
   3 ?    2.2   0.0      0.36   1.5e+02       3      18 ..     285     300 ..     283     311 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0043
                EEEE--TTSSHHHHHHHHHHHH...GGGEEE CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkssgvkvgG 32
                v++ Gp+G GK+Tl+  ++ ll+++  + +G
  KIR60600.1 35 VLLLGPSGAGKSTLLAALAGLLSDDSGEQEG 65
                7899***************999877555555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 8.9
                 HHHHHHHHHTTTSEEEEE--SS-.-SHHHHHH CS
    NTPase_1 114 fkeaveevLksekpvlavihrrk.dlalveei 144
                 +++av ++++ ++ ++ v hr    l+lv+++
  KIR60600.1 177 VRRAVADAVTADTALVLVEHRVAeALPLVDRV 208
                 68999999999999999999987788888876 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.36
                 EEE--TTSSHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkk 18 
                 ++ Gp G GK+Tl   
  KIR60600.1 285 AVLGPNGAGKSTLALL 300
                 677*********9865 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.014       5.6       5      21 ..      39      55 ..      35      59 .. 0.85
   2 ?    5.9   0.0     0.024       9.7       2      19 ..     285     302 ..     284     307 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.014
                    -STTSSHHHHHHHHHHH CS
  Cytidylate_kin  5 GPagsGKssvaralaek 21
                    GP+g+GKs++  ala  
      KIR60600.1 39 GPSGAGKSTLLAALAGL 55
                    9*********9999965 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.024
                     EEE-STTSSHHHHHHHHH CS
  Cytidylate_kin   2 aiDGPagsGKssvarala 19 
                     a+ GP g+GKs++a +l+
      KIR60600.1 285 AVLGPNGAGKSTLALLLG 302
                     778***********9886 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0013      0.53       4      28 ..      35      59 ..      33      72 .. 0.85
   2 ?    1.8   0.1       0.4   1.6e+02       4      18 ..     284     298 ..     282     313 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0013
                EEEEESTTSSHHHHHHHHHHHHHHT CS
       SRP54  4 illvGlqGaGKTttlaKLaallkke 28
                +ll+G+ GaGK t la La ll+++
  KIR60600.1 35 VLLLGPSGAGKSTLLAALAGLLSDD 59
                79*****************998876 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.4
                 EEEEESTTSSHHHHH CS
       SRP54   4 illvGlqGaGKTttl 18 
                 ++++G++GaGK t +
  KIR60600.1 284 LAVLGPNGAGKSTLA 298
                 5789*******9975 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0024      0.97       1      22 [.      34      55 ..      34      81 .. 0.72
   2 ?    1.9   0.0      0.62   2.5e+02       3      16 ..     285     298 ..     283     301 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0024
                EEEEESSTTSSHHHHHHCHCT- CS
         Roc  1 KvvlvGdsgvGKtsllkrfved 22
                +v+l+G sg+GK++ll  +   
  KIR60600.1 34 RVLLLGPSGAGKSTLLAALAGL 55
                689*************998763 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.62
                 EEESSTTSSHHHHH CS
         Roc   3 vlvGdsgvGKtsll 16 
                  ++G +g+GK++l+
  KIR60600.1 285 AVLGPNGAGKSTLA 298
                 689*********96 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0022      0.89      46      69 ..      34      56 ..      25      79 .. 0.81
   2 ?    1.5   0.0      0.59   2.4e+02      46      62 ..     282     298 ..     271     309 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0022
       Rad17 46 riLLisGPsGCgkstvvkvLskel 69
                r+ L+ GPsG gkst +  L+  l
  KIR60600.1 34 RV-LLLGPSGAGKSTLLAALAGLL 56
                44.566***********9998766 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.59
       Rad17  46 riLLisGPsGCgkstvv 62 
                 + L + GP G gkst  
  KIR60600.1 282 EALAVLGPNGAGKSTLA 298
                 468899********975 PP

>> Phage_base_V  Type VI secretion system, phage-baseplate injector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0018      0.72      53      85 ..      28      62 ..      12      71 .. 0.76
   2 ?    0.5   0.1       1.3   5.4e+02      54      75 ..     278     299 ..     274     316 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0018
                  XXXTTXEEEEEEXXTTTXXEE..EEEEEXXSSSXX CS
  Phage_base_V 53 apsvGEqvvllspsGelatav..vlpglysdafpa 85
                  ++++GE v+ll psG  +++   +l+gl sd++ +
    KIR60600.1 28 SVEAGERVLLLGPSGAGKSTLlaALAGLLSDDSGE 62
                  4689**********987776522799999998765 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.3
                   XXTTXEEEEEEXXTTTXXEEEE CS
  Phage_base_V  54 psvGEqvvllspsGelatavvl 75 
                   + +GE   +l p+G  +++ +l
    KIR60600.1 278 VRAGEALAVLGPNGAGKSTLAL 299
                   678**********977665544 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0075       3.1       4      30 ..      34      60 ..      31      92 .. 0.80
   2 ?    2.8   0.1      0.24     1e+02       7      25 ..     286     304 ..     280     319 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0075
                EEEEESSTTSSHHHHHHHHHHHHHHTT CS
  APS_kinase  4 vvwltGlsgsGKstianalekkLvekg 30
                 v+l G sg+GKst+  al+  L ++ 
  KIR60600.1 34 RVLLLGPSGAGKSTLLAALAGLLSDDS 60
                58899**************99887654 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.24
                 EESSTTSSHHHHHHHHHHH CS
  APS_kinase   7 ltGlsgsGKstianalekk 25 
                 + G  g+GKst+a  l   
  KIR60600.1 286 VLGPNGAGKSTLALLLGGL 304
                 66999********988655 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0034       1.4      30      70 ..      33      74 ..      25      89 .. 0.77
   2 ?    2.0   0.2      0.21        84      25      57 ..     279     309 ..     272     315 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0034
                EEEEEEE-TTSSHHHHHHHHHHHHHC.TT--EEEEEE----- CS
        MeaB 30 qvvGltGvPGaGkstlvealglelrr.rGkrvavlavDPssp 70
                ++v l G  GaGkstl+ al+  l +  G++ + + vD   p
  KIR60600.1 33 ERVLLLGPSGAGKSTLLAALAGLLSDdSGEQEGTVEVDGVDP 74
                577889999***********9999752688766666654433 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.21
                 G-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT CS
        MeaB  25 kaGraqvvGltGvPGaGkstlvealglelrrrG 57 
                 +aG+a  + + G  GaGkstl   lg  lr   
  KIR60600.1 279 RAGEA--LAVLGPNGAGKSTLALLLGGLLRPGA 309
                 55555..5678999*******988887777554 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0025         1     125     156 ..      28      59 ..      21      75 .. 0.82
   2 ?    0.8   0.0      0.52   2.1e+02     125     146 ..     277     298 ..     272     307 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0025
       T2SSE 125 avrerglilvsGgTgsGKttllyallkeinks 156
                 +v++   +l+ G+ g GK+tll al   + ++
  KIR60600.1  28 SVEAGERVLLLGPSGAGKSTLLAALAGLLSDD 59 
                 5667778999**************99888776 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.52
       T2SSE 125 avrerglilvsGgTgsGKttll 146
                 avr+   + v G+ g GK+tl+
  KIR60600.1 277 AVRAGEALAVLGPNGAGKSTLA 298
                 66777788899*********86 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0075         3      90     112 ..      35      56 ..      24      61 .. 0.80
   2 ?    3.2   0.1     0.083        34      90     108 ..     283     301 ..     272     309 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0075
    AAA_PrkA  90 ilyllGPvggGksslverlkkll 112
                 + +llGP g+Gks+l  +l  ll
  KIR60600.1  35 V-LLLGPSGAGKSTLLAALAGLL 56 
                 4.589**********99987776 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.083
    AAA_PrkA  90 ilyllGPvggGksslverl 108
                  l +lGP g+Gks+l+  l
  KIR60600.1 283 ALAVLGPNGAGKSTLALLL 301
                 5789***********9766 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.023       9.3       5      43 ..      35      76 ..      31      95 .. 0.75
   2 ?    4.0   0.0      0.12        49       3      21 ..     282     300 ..     280     311 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.023
      AAA_14  5 lvitGaRrvGKTtllkqlikell...vkkesilyinldderd 43
                +++ G+  +GK+tll  l+  l     ++e +++++  d+r 
  KIR60600.1 35 VLLLGPSGAGKSTLLAALAGLLSddsGEQEGTVEVDGVDPRA 76
                7899***********999855546666666666666666555 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.12
      AAA_14   3 kilvitGaRrvGKTtllkq 21 
                 ++l++ G+  +GK+tl+  
  KIR60600.1 282 EALAVLGPNGAGKSTLALL 300
                 6899************865 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0019      0.76      24      55 ..      31      62 ..      26      90 .. 0.78
   2 ?    0.4   0.1      0.56   2.3e+02      24      48 ..     280     304 ..     274     312 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0019
        DLIC 24 sgksvlvlGedgsGkttliaklqGveeekkGr 55
                +g  vl+lG +g+Gk+tl+a l G+     G 
  KIR60600.1 31 AGERVLLLGPSGAGKSTLLAALAGLLSDDSGE 62
                7899********************87766665 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.56
        DLIC  24 sgksvlvlGedgsGkttliaklqGv 48 
                 +g ++ vlG +g+Gk+tl   l G+
  KIR60600.1 280 AGEALAVLGPNGAGKSTLALLLGGL 304
                 678899***********98777665 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.022       8.8       2      21 ..      38      57 ..      37      74 .. 0.80
   2 ?    2.9   0.1      0.19        79       1      12 [.     286     297 ..     286     305 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.022
  ATP_bind_1  2 vGpaGsGKttfvgalseile 21
                +Gp G+GK+t+  al+ +l+
  KIR60600.1 38 LGPSGAGKSTLLAALAGLLS 57
                7************9987765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.19
  ATP_bind_1   1 vvGpaGsGKttf 12 
                 v+Gp G+GK+t+
  KIR60600.1 286 VLGPNGAGKSTL 297
                 89*********8 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0038       1.5       2      23 ..      33      54 ..      32      61 .. 0.91
   2 ?   -0.3   0.1         2     8e+02       5      21 ..     285     301 ..     282     305 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0038
   PduV-EutP  2 kkilliGkvgsGKttLtqalkg 23
                +++ll+G++g+GK tL  al g
  KIR60600.1 33 ERVLLLGPSGAGKSTLLAALAG 54
                589**************99987 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 2
   PduV-EutP   5 lliGkvgsGKttLtqal 21 
                  ++G+ g+GK tL+  l
  KIR60600.1 285 AVLGPNGAGKSTLALLL 301
                 579**********8655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.013       5.1      18      41 ..      31      54 ..      16      62 .. 0.80
   2 ?    2.0   0.1      0.48   1.9e+02      16      36 ..     278     298 ..     264     308 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.013
                HTEEEEEEESTTSSHHHHHHHHHH CS
        TsaE 18 lgdvilLeGdLGaGKTtlvrglak 41
                +g+ +lL G+ GaGK+tl  +la 
  KIR60600.1 31 AGERVLLLGPSGAGKSTLLAALAG 54
                36779*************999875 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.48
                 HCHTEEEEEEESTTSSHHHHH CS
        TsaE  16 kalgdvilLeGdLGaGKTtlv 36 
                   +g++++  G+ GaGK+tl+
  KIR60600.1 278 VRAGEALAVLGPNGAGKSTLA 298
                 3346789999*********97 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1     0.004       1.6       4      32 ..      36      67 ..      34     201 .. 0.84
   2 ?    1.4   0.2      0.52   2.1e+02       3      16 ..     284     297 ..     282     312 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.004
                EEEESTTCCHHHHHHHHH...CT--SS-EEEE CS
        cobW  4 vltGflGsGKTtLlnhll...enraglklavi 32
                +l G+ G+GK+tLl +l    ++ +g++   +
  KIR60600.1 36 LLLGPSGAGKSTLLAALAgllSDDSGEQEGTV 67
                6889**********998766666666655555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.52
                 EEEEESTTCCHHHH CS
        cobW   3 tvltGflGsGKTtL 16 
                 + + G+ G+GK+tL
  KIR60600.1 284 LAVLGPNGAGKSTL 297
                 56889********8 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.033        13      25      50 ..      34      59 ..      25      88 .. 0.81
   2 ?    3.1   0.0      0.15        62      27      43 ..     285     301 ..     276     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.033
      AAA_15 25 ltvliGkNnsGKSsilealdlFlnnk 50
                  +l G+ ++GKS++l al  +l+ +
  KIR60600.1 34 RVLLLGPSGAGKSTLLAALAGLLSDD 59
                57899**************9999866 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.15
      AAA_15  27 vliGkNnsGKSsileal 43 
                  + G+N++GKS+++ +l
  KIR60600.1 285 AVLGPNGAGKSTLALLL 301
                 577*********99777 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0045       1.8      19      51 ..      35      71 ..      28      77 .. 0.79
   2 ?    1.4   0.4      0.42   1.7e+02      22      36 ..     287     301 ..     280     313 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0045
  Zeta_toxin 19 illgGqpGAGKselaellkdele....rqgnvvrldp 51
                +ll G +GAGKs+l+++l+  l     +q++ v++d+
  KIR60600.1 35 VLLLGPSGAGKSTLLAALAGLLSddsgEQEGTVEVDG 71
                789999********99988766555557888888876 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.42
  Zeta_toxin  22 gGqpGAGKselaell 36 
                  G  GAGKs+la ll
  KIR60600.1 287 LGPNGAGKSTLALLL 301
                 5889*******9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              44  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 3377.49
//
Query:       KIR60601.1  [L=196]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-41  139.6  14.5    5.3e-41  139.6  14.5    1.7  2  ABC_cobalt  ABC-type cobalt transport system, permease compon
     0.0071   16.4   7.9     0.0071   16.4   7.9    1.6  1  Trep_Strep  Hypothetical bacterial integral membrane protein 


Domain annotation for each model (and alignments):
>> ABC_cobalt  ABC-type cobalt transport system, permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.6  14.5   5.9e-45   5.3e-41       2     120 ..      13     132 ..      12     133 .. 0.97
   2 ?   -0.8   0.1      0.18   1.6e+03       8      20 ..     157     169 ..     140     185 .. 0.59

  Alignments for each domain:
  == domain 1  score: 139.6 bits;  conditional E-value: 5.9e-45
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH..HHH-GGG.GGGGGGGGGHHHHHHHHHH-STTHHHHHHHHHHHHHHHTT-TTTTHHHHHHHHHHHHHHHHH CS
  ABC_cobalt   2 diilvavigvvfGviflawglvynals..aaltPlgaealllGlWllagvlaaliirkpgaallaellaAlvemllgsqwGastllsglvqGlgaElaf 98 
                 di++++vi+v+fGvif+awglv++a++   a++P  a+ ll+G+Wl+++vl++l+irkpgaal++e++aA++++llgsqw  +++ +g+vqGlgaElaf
  KIR60601.1  13 DIVVASVIAVAFGVIFWAWGLVWSATEgaFAFFP-PAQTLLYGVWLMPAVLGGLVIRKPGAALYCETVAAVLSALLGSQWAGTVIPQGMVQGLGAELAF 110
                 9**************************9888889.78************************************************************** PP

                 HHTTT---SHHHHHHHHHHHHH CS
  ABC_cobalt  99 altrYrrftllvlllsgalaai 120
                 a++rYr+f+l+++ll+gal+++
  KIR60601.1 111 AAFRYRSFRLPTALLAGALTGV 132
                 *******************987 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHH CS
  ABC_cobalt   8 vigvvfGviflaw 20 
                 ++ vv++ i+ ++
  KIR60601.1 157 LLTVVSATIIAGA 169
                 3344444443333 PP

>> Trep_Strep  Hypothetical bacterial integral membrane protein (Trep_Strep)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   7.9   7.9e-07    0.0071       3     111 ..      13     125 ..      11     148 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.9e-07
  Trep_Strep   3 Dlitigiftalyfvvvfvvgmlglispvlmlllpaivallagivymllv...akvpkfgailimglllgllllltGhgwl..vlllaiiggliaeliak 96 
                 D++   + ++ + v++++ g++   +   +++ p+   ll g+  m +v     ++k+ga+l + ++ ++l +l G  w   v++  ++ gl ael ++
  KIR60601.1  13 DIVVASVIAVAFGVIFWAWGLVWSATEGAFAFFPPAQTLLYGVWLMPAVlggLVIRKPGAALYCETVAAVLSALLGSQWAgtVIPQGMVQGLGAELAFA 111
                 8888888888899999999995555699999999999999999888777222579**********************8862266779************ PP

  Trep_Strep  97 sggykskkknilsya 111
                 + +y+s++ +  +  
  KIR60601.1 112 AFRYRSFR-LPTALL 125
                 ******97.333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1293.28
//
Query:       KIR60602.1  [L=258]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00099   19.1   0.0     0.0015   18.5   0.0    1.2  1  DUF1980   Domain of unknown function (DUF1980)
     0.0062   16.8   0.6      0.012   15.9   0.6    1.4  1  TctB      Tripartite tricarboxylate transporter TctB family


Domain annotation for each model (and alignments):
>> DUF1980  Domain of unknown function (DUF1980)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.7e-07    0.0015       3     111 ..       6     135 ..       5     149 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.7e-07
     DUF1980   3 rfliLlgFavllfkLhasgeiskYInpkyapllyfamvvllilalvqliraqkkk.........................ecghdHe.eksfikkllsy 75 
                 ++++Ll++++ ++   +++ ++ Y+   + p+l+ a  vl+  a+++l+   +                           ++gh H+ +++      + 
  KIR60602.1   6 QAVVLLLLGGAVVRASVTDLYLRYVKEGLRPFLIAAGLVLIAAAVMTLWYDLRPAprgdapasggdgpasgsgsggqpedDDGHGHGhHGP-----RVG 99 
                 578999999999999********************************99999988999*******************98526666642222.....345 PP

     DUF1980  76 lilviPlllglllptkvldssiakakGfnfslakes 111
                  +l++P+l +ll+ +++l s  +++ G+++  +++s
  KIR60602.1 100 WLLLLPVLGLLLVAPPALGSYAVGQAGTALAGQQQS 135
                 78999***********************99988854 PP

>> TctB  Tripartite tricarboxylate transporter TctB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.6   1.3e-06     0.012       4      94 ..       7     114 ..       4     133 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.3e-06
        TctB   4 gllllllagvafavgald.tgarvgpgffPlllgvllallgllllv...........................aadgekeekearedwrkllklvlall 74 
                 +++llll+g+++ ++ +d + + v  g+ P+l++++l+l++++++                                      ++ed+++      +  
  KIR60602.1   7 AVVLLLLGGAVVRASVTDlYLRYVKEGLRPFLIAAGLVLIAAAVMTlwydlrpaprgdapasggdgpasgsgsG--------GQPEDDDGHGHGHHG-- 95 
                 56667775543334555555588999*******888888884444447****************9876655442........222233333333333.. PP

        TctB  75 aalllyallleplGfilata 94 
                    + ++lll++lG++l ++
  KIR60602.1  96 -PRVGWLLLLPVLGLLLVAP 114
                 .4444555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1780.54
//
Query:       KIR60603.1  [L=249]
Description: sugar isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-40  136.5   1.0    1.1e-39  135.6   0.2    1.7  2  SIS_2     SIS domain
     0.0028   17.5   0.4      0.011   15.5   0.0    2.1  3  SIS       SIS domain
     0.0063   16.2   0.1        1.3    8.7   0.0    2.4  3  DUF2529   Domain of unknown function (DUF2529)


Domain annotation for each model (and alignments):
>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.2   1.8e-43   1.1e-39       1     138 []       7     145 ..       7     145 .. 0.98
   2 ?   -1.1   0.0       0.3   1.8e+03     118     135 ..     193     210 ..     159     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 1.8e-43
                 HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-BTTEEEE--GGGSSSSST...THHHHHTT-TTHHHHHHHH CS
       SIS_2   1 qYlaevteilerivetqaeaiekaaeliadslenggkvlvfGsGhSaalaeelaaragglaeferialpalalhtda.eatkssalerdegyakqilrl 98 
                 +Yla vte++ r++++q ea+ +aa+liad+l+++g+v++fG+GhS+ala+e+a raggl++++rial++++l  +a        lerd+ +a+++++l
  KIR60603.1   7 DYLAVVTETIGRVSASQREAVGRAADLIADALRADGVVHAFGTGHSEALAMEIAGRAGGLVPTNRIALRDVVLRGGApADVLGPLLERDPAVAHRLYEL 105
                 59**************************************************************************98888999*************** PP

                 TT--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2  99 vrlkpgDvLlviSnsGnnavvveaaeaakergmkviAlts 138
                 ++++p+Dv++v+SnsG+n ++ve+a  +  rg++++A+ts
  KIR60603.1 106 APVHPSDVFVVASNSGVNGAIVEFAALVTGRGHRLVAITS 145
                 ***************************************8 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHT-EEEE CS
       SIS_2 118 vvveaaeaakergmkviA 135
                 + + aa+ a+++ ++v+A
  KIR60603.1 193 SSITAALLAQQVTVEVVA 210
                 568899999999999988 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.42   2.5e+03      11      24 ..      47      60 ..      42      61 .. 0.90
   2 !   15.5   0.0   1.9e-06     0.011      45      93 ..     103     150 ..      93     156 .. 0.91
   3 ?   -2.8   0.0      0.89   5.3e+03     112     124 ..     189     201 ..     162     207 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.42
                EESHHHHHHHHHHH CS
         SIS 11 lGaGtsyaiakela 24
                +G+G s a+a+e+a
  KIR60603.1 47 FGTGHSEALAMEIA 60
                799********997 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.9e-06
                 HTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSH CS
         SIS  45 hgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsp 93 
                 ++ la++ + d++++ s sg +   v+ a l++ rg++++aIT+ ++s+
  KIR60603.1 103 YE-LAPVHPSDVFVVASNSGVNGAIVEFAALVTGRGHRLVAITSAQHSA 150
                 45.899*************************************999885 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.89
                 SSHCHHHHHHHHH CS
         SIS 112 vastksltaqlaa 124
                 v++++s+ta l+a
  KIR60603.1 189 VGAVSSITAALLA 201
                 4666777777665 PP

>> DUF2529  Domain of unknown function (DUF2529)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00021       1.3      14      57 ..      17      60 ..      12      77 .. 0.87
   2 !    4.9   0.0     0.003        18      68     131 ..     101     173 ..      93     182 .. 0.83
   3 ?   -2.9   0.0      0.77   4.6e+03      19      32 ..     201     214 ..     189     215 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00021
                HHH.HCCHHHHHHHHHHHHHHHHTT--EEEEE-GGGGGGHHHHH CS
     DUF2529 14 kriqekeeesiedaarlLaqavigdgkvyikgfgeleaveaeal 57
                 r+++ + e++  aa l+a a+ +dg v   g+g  ea++ e+ 
  KIR60603.1 17 GRVSASQREAVGRAADLIADALRADGVVHAFGTGHSEALAMEIA 60
                578889999*************************9999988875 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.003
                 E--TT----TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEESS---T...........TGGGSSS-EE-- CS
     DUF2529  68 kleeekeltetDrvllfsresndkealklakkleekgievvavsskvkeeda.........lteladvfidlk 131
                 +l e + ++++D  ++ s++  +  ++++a+ +  +g  +va++s+++++++         l++ adv +d+ 
  KIR60603.1 101 RLYELAPVHPSDVFVVASNSGVNGAIVEFAALVTGRGHRLVAITSAQHSARMasrhpsgrkLADFADVVLDNG 173
                 56666689999*999999999999**********************999887677777777777777777765 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.77
                 CCHHHHHHHHHHHH CS
     DUF2529  19 keeesiedaarlLa 32 
                  ++  +e +arlLa
  KIR60603.1 201 AQQVTVEVVARLLA 214
                 45667788888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1767.63
//
Query:       KIR60604.1  [L=167]
Description: amine oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0012   17.5   2.9     0.0015   17.2   2.9    1.1  1  AA_permease  Amino acid permease
  ------ inclusion threshold ------
      0.091   11.0   4.1       0.11   10.7   4.1    1.1  1  DUF2070      Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   2.9   1.7e-07    0.0015     349     474 ..      32     150 ..      27     154 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.7e-07
  AA_permease 349 llalllaslnlaapivfnfllais..aliglivwlliilsylrfRkalkyqgrsieelgfkaallplgvilvla.aliiillilalyayltvkkgpkd 443
                  +++ll   ++ + + +++f   ++  al   +  +++i+s + f +al+ qgr+ e+++f  ++++ g+ ++l+ +++++lli+++++          
   KIR60604.1  32 FAFLLTLPFSNGFTRTSDFQKDVYivALLSAAAATAMIISPVAFHRALFRQGRKPELVRFAHRMASGGLAFMLVsMVSAVLLITDFVLDRG------- 122
                  566666666667677777765554004555556678899999**************************99987626788999999997666....... PP

  AA_permease 444 wgaasfaaaylivllfliilvgvklhvknkr 474
                     + f+++ +++++fl ++v   ++ +n+ 
   KIR60604.1 123 ---IAFVLTAVTAVWFLTFWVFLPFARRNWG 150
                  ...89**********************9995 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.1   1.3e-05      0.11      40     148 ..      22     140 ..      12     153 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.3e-05
     DUF2070  40 gillfglpalvaflltlpvlrilggrltykrs.lflalltelivviisllaillsall......qalvllalvls...lalvfalrllvlvavsdesll 128
                 ++   g+ +l+aflltlp+ + + ++ + ++  +++all++  + ++++ ++++   l      ++lv +a  ++   la++++  +  +++++d  l 
  KIR60604.1  22 RVAQTGVQILFAFLLTLPFSNGFTRTSDFQKDvYIVALLSAAAATAMIISPVAFHRALfrqgrkPELVRFAHRMAsggLAFMLVSMVSAVLLITDFVLD 120
                 677889*****************9996666665666666666666666666665554468888866666666655777555555555555555555555 PP

     DUF2070 129 kavlpaliqpllailllvly 148
                 + ++ +l+   ++++l++++
  KIR60604.1 121 RGIAFVLTAVTAVWFLTFWV 140
                 55544333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1043  (0.0581739); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1140.62
//
Query:       KIR60605.1  [L=685]
Description: acyl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-32  112.7   2.0    1.7e-32  112.7   2.0    2.8  4  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    5.4e-23   81.0   0.0    1.1e-22   80.0   0.0    1.6  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    7.1e-23   81.4   0.0    2.3e-22   79.8   0.0    2.0  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
      2e-08   34.1   0.2    4.3e-08   33.1   0.2    1.4  1  DUF1974        Domain of unknown function (DUF1974)
      2e-05   24.9   0.3      2e-05   24.9   0.3    2.6  3  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
    0.00022   21.0   0.0    0.00058   19.6   0.0    1.6  1  HpaB_N         4-hydroxyphenylacetate 3-hydroxylase N termina
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.24   11.0   0.0    1.3  1  MlaE           Permease MlaE


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       0.5   1.3e+03      26      47 ..      59      80 ..      56      83 .. 0.90
   2 ?   -3.8   0.0       5.2   1.3e+04       9      35 ..     158     184 ..     157     187 .. 0.82
   3 !  112.7   2.0   6.8e-36   1.7e-32       1     148 [.     325     483 ..     325     485 .. 0.96
   4 ?   -1.8   0.3       1.3   3.3e+03      36      84 ..     560     606 ..     541     629 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.5
                   HHHHHHHHHHHHHTSB-CC-BG CS
  Acyl-CoA_dh_1 26 arraleealeyarrrkafgkpl 47
                   ar++ e a+e a +r +fgk l
     KIR60605.1 59 ARQVAEAARESAWDRPSFGKEL 80
                   789999*************987 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.2
                    TTT--S-----..-SHHHHHHHHHHHH CS
  Acyl-CoA_dh_1   9 etlnheRlavaaaalglarraleeale 35 
                    ++l++ R+++ a+++  a  al  a++
     KIR60605.1 158 SNLHYCRALMLAGSVSPAIGALLSAHQ 184
                    578999999999999999998877765 PP

  == domain 3  score: 112.7 bits;  conditional E-value: 6.8e-36
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------.HHHHHHHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd.raeasmaKlfa 95 
                    gkG+++a++tln +Rl++ a+++g+ +  l+ a+e+a +r + g+p+++h++v++kla +aa + ++  ++  +  ++d++++d r ea+++Kl+a
     KIR60605.1 325 GKGLKIALTTLNTGRLSLPAMCVGAGKWSLNVAREWAADRVQWGRPVGEHEAVAQKLAFVAATTYGMETMLDLCCLLADDDRNDiRIEAALVKLYA 420
                    79********************************************************************************************** PP

                    HHHHHHHHHHHHHHHGGGTT..........SGGGH...HHHHHHHTHHHHHSSS-HHHHHHHHHHH CS
  Acyl-CoA_dh_1  96 selaqevadlamqllGgaGy..........leeyp...verlyrdarvlrigeGtseiqrniiarr 148
                    se+a+++ d+ +q+ Gg+Gy          +   +   ve+l+rd r++ri+eG++ei+ ++iar 
     KIR60605.1 421 SEMAWKIGDELIQIRGGRGYeiadslaargE---RpaaVEQLLRDLRINRIFEGSTEIMHLLIARE 483
                    ************************9985443...3456**************************97 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.3
                    HHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH-------- CS
  Acyl-CoA_dh_1  36 yarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd 84 
                    ya +r +  +++  +q+   +++++ ael a+ + + ra +  da  ++
     KIR60605.1 560 YAMSRWQ--GKMERKQAFLGRVVDIGAELFAMSAVCVRAYAEKDARPEN 606
                    5555555..4577888888899999999999999999988766655444 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   4.3e-26   1.1e-22       1      97 []     215     313 ..     215     313 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 4.3e-26
                    EEE---SS-SS-GGG---EE.EEETT.EEEEEEEEEEEETTTT-SEEEEEEE..TS---.----EEEEEEE..GGGEEE-----BSS-TTS-EEEE CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvktta.aerdggeyvlnGeKiwitnaaiatlalvlar..tekpd.rarglslflvprdapgvsvrrieeklGlrglptgel 92 
                    af lTEp++Gsd a+++tta  + dg +y+lnG K w tn++ atl++v+ar  +  ++ r++g++ f+v+ da+g++v+r  e +Glrgl+++  
     KIR60605.1 215 AFLLTEPDVGSDPARLATTAePTADGTGYRLNGVKLWATNGTVATLLVVMARvpA--TQgRRGGITAFVVDGDAEGITVERRNEFTGLRGLENSLT 308
                    799*****************99999999************************644..4446******************9999************* PP

                    EEE.. CS
  Acyl-CoA_dh_M  93 vfedv 97 
                    +f+dv
     KIR60605.1 309 RFHDV 313
                    **997 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   9.1e-26   2.3e-22       4     113 .]     104     212 ..     101     212 .. 0.95

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 9.1e-26
                    HHHHHHHHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTH.HHHHHHS- CS
  Acyl-CoA_dh_N   4 qealrdtvrefaeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslva.pailrfGt 98 
                     e++  ++r++++ e+    a +++++++p+e+++ la+lG +g+ +  +ygG+gl++l+++ ++   + ++ ++++ll++h+s+++ +++  fGt
     KIR60605.1 104 AEEFLGRLRAYLAAEVD--GAAIERDARIPDEVFRGLARLGAFGMKIDRKYGGLGLSNLHYCRALMLAGSVSPAIGALLSAHQSIGVpQPLKMFGT 197
                    5789999*********6..788888889**********************************************************989******* PP

                    HHHHHHHHHHHHTTS CS
  Acyl-CoA_dh_N  99 eeqkrryLpklasge 113
                    +eqk+r+Lp+la+ge
     KIR60605.1 198 DEQKQRFLPRLAAGE 212
                    *************98 PP

>> DUF1974  Domain of unknown function (DUF1974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.2   1.7e-11   4.3e-08      60     161 ..     537     639 ..     513     654 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.7e-11
     DUF1974  60 agetkryyrqlnrlSaafAllaDlallvLGGeLKrkerlsaRlgDvlSqLYlasav.LkrfedegrqeedlplvhwalqdalaqaeealdellaNfpnr 157
                  g+++ + rq++r+S ++A  +  a+    G++ rk+ + +R  D+ ++L+ +sav ++ + +++++ e+  l++  +++a  +++  +++l aN +  
  KIR60605.1 537 FGPIAGHLRQVERYSRKLARSTFYAMSRWQGKMERKQAFLGRVVDIGAELFAMSAVcVRAYAEKDARPENVELADLFCRQARLRVDALFTALWANTDPV 635
                 46788999***********************************************85899**************************9999999998655 PP

     DUF1974 158 vval 161
                  va+
  KIR60605.1 636 DVAA 639
                 5555 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.3   7.8e-09     2e-05       4     111 ..     343     441 ..     340     469 .. 0.91
   2 ?   -4.1   0.0       6.9   1.8e+04      10      23 ..     480     493 ..     480     501 .. 0.78
   3 ?   -1.6   0.5       1.2     3e+03      33      78 ..     568     610 ..     552     655 .. 0.57

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 7.8e-09
                    HHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   4 aavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaavd 99 
                     a+++Ga +  l+ + e+a++rv+   g+++ +++a+ ++la +aa     +++l   +     + ++++      r ea++ +++a+e+a ++ d
     KIR60605.1 343 PAMCVGAGKWSLNVAREWAADRVQ--WGRPVGEHEAVAQKLAFVAATTYGMETMLDLCCLL---ADDDRND----IRIEAALVKLYASEMAWKIGD 429
                    5899********************..**************************999998888...3444555....5******************** PP

                    HHHHHCGGGGGB CS
  Acyl-CoA_dh_2 100 alfeaaGgsalr 111
                    +l+++ Gg+++ 
     KIR60605.1 430 ELIQIRGGRGYE 441
                    **********96 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 6.9
                    HHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2  10 aAraalaefvelar 23 
                    +Ar a+++++++a+
     KIR60605.1 480 IAREAVDAHLSVAG 493
                    67888888887775 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.2
                    -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HH CS
  Acyl-CoA_dh_2  33 kladdpatqlalaeaaarldAAralleraaaraealaaagkevtve 78 
                    k++ ++a+  ++ ++ a+l A  a+  ra+a+     a+ ++v+ +
     KIR60605.1 568 KMERKQAFLGRVVDIGAELFAMSAVCVRAYAEK---DARPENVELA 610
                    566666666666666667777666666666662...2222222222 PP

>> HpaB_N  4-hydroxyphenylacetate 3-hydroxylase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.3e-07   0.00058     181     271 ..     245     321 ..     225     321 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.3e-07
                 EEEEEEEEE-.--SSEEEE---SS-..TTSGGG-EEEEEETT-TTEEEEE-------S..-TTT-TTTTT----EEEEEEEEEEEEGGGEE CS
      HpaB_N 181 VrGakvlaTgaaladeilvlptramlkeedkdyavafavpvdapGlklicresfedkleesefdyplssrfdendalvvfDdVfVPwerVf 271
                  +G+k+ aT++ +a  ++v+    + +++ +    af+v  da+G+++  r++f   l             + +++l+ f dVfVP e+V+
  KIR60605.1 245 LNGVKLWATNGTVATLLVVMARV-PATQGRRGGITAFVVDGDAEGITVERRNEFTG-L---------R---GLENSLTRFHDVFVPAENVI 321
                 68*************99999995.5599********************99999987.3.........2...34578999**********95 PP

>> MlaE  Permease MlaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.4e-05      0.24      62     116 ..     165     219 ..     162     220 .. 0.97

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.4e-05
        MlaE  62 allvagrvGsaiaAelGtmrvteeidAlevmgidpikylvvPrvlAlvialplLt 116
                 al++ag v+ ai A l + +  +  + l+++g+d  k  ++Pr++A+ ++++lLt
  KIR60605.1 165 ALMLAGSVSPAIGALLSAHQSIGVPQPLKMFGTDEQKQRFLPRLAAGEVSAFLLT 219
                 9**************************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 5026.72
//
Query:       KIR60606.1  [L=131]
Description: Fur family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-29  102.7   0.0    1.5e-29  102.5   0.0    1.0  1  FUR       Ferric uptake regulator family
  ------ inclusion threshold ------
       0.06   14.0   0.6       0.37   11.4   0.1    2.1  2  HTH_32    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   1.7e-33   1.5e-29       3     119 ..       6     122 ..       4     123 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 1.7e-33
                 THCHHHHHHHHHHHHHHHSSSBEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESSSSSEEEEEETTT--EEEE--HHHHHHH CS
         FUR   3 glklTkqRekilevlekseehlsaeevykelkeedpeislaTVYrtLklleeaglvkelefedgesryelakkehhdhlicekCgkviefkddeiekiq 101
                  ++ T+qR ++ ++l + e + sa++++ +l+e++++++l+TVYrtL+ l++ag ++ +   +ge  y+ +++ hh+hl+c+ Cg++ e+  + +e+++
  KIR60606.1   6 AVRNTRQRSAVSALLGEVEGFHSAQDLHAMLRERGERVGLTTVYRTLQGLADAGEIDVMRPPGGEHLYRRCSEGHHHHLVCRVCGRTVEVAGPTVEAWA 104
                 589************************************************************************************************ PP

                 HHHHHHTT-EEEEEEEEE CS
         FUR 102 eeiaekegfklvshrlel 119
                 e++a+++g+  vsh+le+
  KIR60606.1 105 ERVAAQHGYADVSHTLEI 122
                 ****************98 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   4.2e-05      0.37      32      73 .]      11      52 ..       5      52 .. 0.79
   2 ?    1.0   0.1     0.076   6.8e+02      48      66 ..      99     118 ..      54     119 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.2e-05
      HTH_32 32 evrariiallre.eprWsprqlaarlaeregvkvShstvyriL 73
                ++r ++ all e e   s++ l+a l +++g++v   tvyr L
  KIR60606.1 11 RQRSAVSALLGEvEGFHSAQDLHAML-RERGERVGLTTVYRTL 52
                677777777744233679********.77789*********97 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.076
      HTH_32  48 sprqlaarlaeregvk.vSh 66 
                 + +  a+r+a+++g+  vSh
  KIR60606.1  99 TVEAWAERVAAQHGYAdVSH 118
                 45555566655554444666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 989.37
//
Query:       KIR60607.1  [L=99]
Description: ArsR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-16   59.5   0.1    3.8e-16   58.7   0.1    1.4  1  HTH_5     Bacterial regulatory protein, arsR family
    1.6e-10   40.9   1.7    1.6e-10   40.9   1.7    1.6  2  HTH_20    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.028   14.3   0.7      0.043   13.7   0.7    1.4  1  MarR_2    MarR family
      0.035   14.5   0.1      0.042   14.2   0.1    1.2  1  Rrf2      Transcriptional regulator
       0.04   13.5   0.0      0.061   12.9   0.0    1.4  1  HTH_24    Winged helix-turn-helix DNA-binding
      0.092   12.6   0.0       0.13   12.2   0.0    1.2  1  TrmB      Sugar-specific transcriptional regulator TrmB
       0.13   12.5   0.0       0.17   12.0   0.0    1.2  1  HTH_34    Winged helix DNA-binding domain
       0.13   12.1   0.0       0.17   11.7   0.0    1.2  1  HxlR      HxlR-like helix-turn-helix


Domain annotation for each model (and alignments):
>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.1   1.7e-19   3.8e-16       2      45 ..      23      66 ..      22      67 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 1.7e-19
                HHHHHHHHHHTTSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  2 ptRlkILklLaegelcvcelaeelglsqstvShHLkkLreaGLV 45
                p Rl I++ La+ge+cv+el+e+lg  q+ vS+HL++Lr aG+V
  KIR60607.1 23 PIRLAIVSELAQGERCVHELVEKLGAAQPLVSQHLRVLRGAGVV 66
                89*****************************************9 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   1.7     7e-14   1.6e-10       2      61 .]      15      73 ..      14      73 .. 0.97
   2 ?   -1.5   0.0       1.2   2.7e+03       3      15 ..      75      87 ..      74      94 .. 0.69

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 7e-14
                HHHHHHS-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTEE CS
      HTH_20  2 qiaeALahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvregr 61
                ++++AL+ P R++i ++L   +++++ el e l+ ++  +s+HLrvL+ ag v++ r gr
  KIR60607.1 15 ELLRALSAPIRLAIVSEL-AQGERCVHELVEKLGAAQPLVSQHLRVLRGAGVVRGSRRGR 73
                689***************.**************************************997 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.2
                HHHHHS-HHHHHH CS
      HTH_20  3 iaeALahPvRrri 15
                ia+AL ++  + i
  KIR60607.1 75 IAYALVDEHVAHI 87
                7888877665555 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.7   1.9e-05     0.043      23      54 ..      38      69 ..      16      74 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.9e-05
                EHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2 23 tvgelarrlglsksavsrilkrLvaaGLverr 54
                 v el+++lg  ++ vs++l+ L  aG v+ +
  KIR60607.1 38 CVHELVEKLGAAQPLVSQHLRVLRGAGVVRGS 69
                689**************************866 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.9e-05     0.042      26      70 ..      37      82 ..      18      94 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.9e-05
                B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE.EETTT-TCEEESSH CS
        Rrf2 26 vsseeiaerqnispsylekilakLrkaglvk.svrGkgGGyrLakp 70
                  ++e+ e+ +  ++ +++ l+ Lr ag+v+ s+rG++  y+L  +
  KIR60607.1 37 RCVHELVEKLGAAQPLVSQHLRVLRGAGVVRgSRRGREIAYALVDE 82
                35899*************************86899*9988888765 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.7e-05     0.061       6      48 .]      26      67 ..      22      67 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.7e-05
      HTH_24  6 rkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                ++I ++L + +  +  eL e+lg  ++ v+++l+ L  +G+++
  KIR60607.1 26 LAIVSELAQ-GERCVHELVEKLGAAQPLVSQHLRVLRGAGVVR 67
                555555555.6667889***********************996 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.8e-05      0.13      18      65 ..      32      80 ..      26      82 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.8e-05
                HHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEES.STTTEEEE- CS
        TrmB 18 lklgpatadeiaeelgvprskvYevLrsLedkGlVerek.grpklYrav 65
                l++g+  + e+ e+lg  ++ v + Lr L  +G+V+ ++ gr   Y  v
  KIR60607.1 32 LAQGERCVHELVEKLGAAQPLVSQHLRVLRGAGVVRGSRrGREIAYALV 80
                5789999****************************98873445566666 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.8e-05      0.17       1      44 [.      24      66 ..      24      74 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.8e-05
      HTH_34  1 vRlavlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYi 44
                +Rla++s La+ ++ +  el e+l+a +   s hl++L  ag +
  KIR60607.1 24 IRLAIVSELAQGER-CVHELVEKLGAAQPLVSQHLRVLRGAGVV 66
                8********98665.689********************999966 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.8e-05      0.17       8      50 ..      26      67 ..      22      88 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.8e-05
                HHHHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEE CS
        HxlR  8 llilvellkgkkRfselkralpkisqkmLaqrLreLeqdglie 50
                l i+ el +g++  +el ++l + +q + +q+Lr L   g++ 
  KIR60607.1 26 LAIVSELAQGERCVHELVEKL-GAAQPLVSQHLRVLRGAGVVR 67
                5699*****************.789*************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 759.49
//
Query:       KIR60608.1  [L=288]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.6e-63  212.1  29.3    1.1e-62  211.8  29.3    1.0  1  ABC-3          ABC 3 transport family
      6e-05   22.2  31.7    6.3e-05   22.1  30.4    1.7  1  FecCD          FecCD transport family


Domain annotation for each model (and alignments):
>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.8  29.3   1.3e-66   1.1e-62       1     256 [.       5     260 ..       5     262 .. 0.99

  Alignments for each domain:
  == domain 1  score: 211.8 bits;  conditional E-value: 1.3e-66
       ABC-3   1 qyeflqrallasilvslacallgsfvvlrrqsllgdalsHaalpGvalayllgvnlllgailvgliaavalellkrktklkedtaigivlsvflalglv 99 
                 qy+++qral+++++++la+++lg ++v rr +l+gd++ H+al Gv+ ++ll+ +++l a++v++++ava+el++++ +++ d a+++++  ++a g++
  KIR60608.1   5 QYPYMQRALIGALVIGLAAPALGIYLVQRRLALIGDGVGHVALTGVGAGLLLNRSPVLVAVVVATLGAVAIELVRARGRTSGDLALALLFYGGIAGGVM 103
                 799************************************************************************************************ PP

       ABC-3 100 lvslikkskvdldsyLfGniltisqedliliaiieavvllllllfwkelllitfdeelAkveglsvkllkllllalialavvvalqavGviLviallii 198
                 lv l++ ++++l++yLfG++ tis +dl +i+++ a +l+++l ++  l +++ dee+A+v+gl+v++l+lll++ +a++v +a++avGv+L++al+++
  KIR60608.1 104 LVGLSDATSANLNAYLFGSLTTISPQDLTTIVVLGAAILVTMLALRPALFAVCHDEEYARVAGLPVRALNLLLAVGTAVTVTIAMRAVGVLLISALMVV 202
                 *************************************************************************************************** PP

       ABC-3 199 PaatArrltrslesllivAillglvsvvaGlllSyyldlatGavivlvatllfllall 256
                 P atA+++tr ++  +  A++lgl+++ +G+++ + +d+a+Ga++vl+a++ fl++ +
  KIR60608.1 203 PVATAQQVTRGFRATMTAAMALGLFAAGSGVWVAANADTAPGASVVLLAIASFLAVAV 260
                 **************************************************99998765 PP

>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1  30.4   7.1e-09   6.3e-05      81     285 ..      44     238 ..      38     262 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 7.1e-09
       FecCD  81 sgaalgavlalllllgslslfalplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskv 179
                 ++a  g+ ++l      l   + +l+a++ a l+++ + l+    +g ++  l La +  + ++++++ +   l +++++++++ +l+Gsl ++s +++
  KIR60608.1  44 HVALTGVGAGL------LLNRSPVLVAVVVATLGAVAIELVR--ARGRTSGDLALALLFYGGIAGGVMLVG--L-SDATSANLNAYLFGSLTTISPQDL 131
                 44444444444......4456667777777777777766555..677777788888788887777764333..3.78999******************* PP

       FecCD 180 llllvllllllllllllarkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLi.vPhiarllvgadhrkllplsallGallll 277
                   ++vl +++l+++l+l+  l ++  ++e A+  G++v+ ++lll++ +a+ + +a+ +vG++   +L+ vP    + v + +r ++ +++ lG +   
  KIR60608.1 132 TTIVVLGAAILVTMLALRPALFAVCHDEEYARVAGLPVRALNLLLAVGTAVTVTIAMRAVGVLLISALMvVPVATAQQVTRGFRATMTAAMALGLFAAG 230
                 ***************************************************************9999862688888899999********999987766 PP

       FecCD 278 ladllarl 285
                    ++a +
  KIR60608.1 231 SGVWVAAN 238
                 55555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2027.86
//
Query:       KIR60609.1  [L=253]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-29  103.8   0.0    1.3e-29  103.5   0.0    1.1  1  ABC_tran         ABC transporter
    9.2e-08   32.2   0.1    0.00026   20.9   0.0    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    5.5e-05   22.8   0.1     0.0001   22.0   0.1    1.4  1  AAA_29           P-loop containing region of AAA domain
    0.00026   20.5   0.1     0.0067   15.9   0.1    2.1  2  SMC_N            RecF/RecN/SMC N terminal domain
     0.0015   19.0   0.0     0.0021   18.6   0.0    1.1  1  AAA_23           AAA domain
     0.0092   16.4   2.2      0.035   14.5   2.2    1.8  1  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.015   14.7   0.0       0.02   14.2   0.0    1.2  1  FtsK_SpoIIIE     FtsK/SpoIIIE family
       0.03   14.0   0.8       0.28   10.9   0.1    2.0  2  AAA_30           AAA domain
       0.04   14.0   0.1      0.067   13.3   0.1    1.4  1  MMR_HSR1         50S ribosome-binding GTPase
      0.059   13.3   0.1      0.093   12.6   0.1    1.2  1  RsgA_GTPase      RsgA GTPase
      0.067   13.4   0.3        1.1    9.5   0.3    2.2  1  SbcCD_C          Putative exonuclease SbcCD, C subunit
      0.075   12.9   0.0        0.4   10.6   0.1    1.9  2  NTPase_1         NTPase
      0.077   12.6   0.0       0.12   11.9   0.0    1.2  1  AAA_27           AAA domain
      0.085   13.1   0.0       0.45   10.8   0.0    1.9  2  AAA_22           AAA domain
        0.1   12.5   0.0       0.16   11.9   0.0    1.3  1  NACHT            NACHT domain
       0.13   12.5   0.4       0.27   11.5   0.2    1.6  2  AAA_28           AAA domain
       0.15   11.4   0.2       0.83    9.0   0.0    1.9  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
       0.16   12.1   0.2       0.37   11.0   0.2    1.6  1  AAA_33           AAA domain
       0.19   11.6   0.0       0.27   11.1   0.0    1.1  1  ATPase_2         ATPase domain predominantly from Archaea
       0.23   11.1   0.0       0.35   10.6   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.26   11.0   0.0       0.34   10.6   0.0    1.1  1  AAA_15           AAA ATPase domain
       0.31   10.2   0.1       0.53    9.4   0.1    1.3  1  NB-ARC           NB-ARC domain
       0.33    9.7   0.2        1.1    8.0   0.1    1.7  2  ABC_ATPase       Predicted ATPase of the ABC class


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   0.0   1.6e-32   1.3e-29       1     137 []      21     169 ..      21     169 .. 0.91

  Alignments for each domain:
  == domain 1  score: 103.5 bits;  conditional E-value: 1.6e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS..--S-TTSBHHHH.................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx.................x RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe..pqlfpeltvren.................e 80 
                 l++vsl +  ge+vai+G nG+GKStL+++++gl+   +G++ l g++l++    +  k+ig++pq   +      tvre                  +
  KIR60609.1  21 LRDVSLAVDTGEVVAILGANGSGKSTLIRAVLGLVPLHSGSVSLFGTPLRR---FRQWKRIGYVPQRlgAGGGVPATVREVvasgrlarrgvlrppgrA 116
                 689**********************************************99...566689*******5533333345888899999*******999988 PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +++ +++al+++gl + + ++v    ++LSgGq+qr  +aral+ +p+ll+lDEpta
  KIR60609.1 117 DRAAVDAALASVGLADRAGDPV----ATLSGGQQQRTLIARALAGEPELLVLDEPTA 169
                 8888*****************9....*****************************97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.3e-07   0.00026       2      22 ..      34      54 ..      33      98 .. 0.77
   2 !    9.6   0.0   0.00094      0.73     233     283 ..     137     184 ..     127     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.3e-07
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                 ++ G+NgsGKS+L++a  +l
  KIR60609.1 34 VAILGANGSGKSTLIRAVLGL 54
                689**************9888 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00094
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellk 283
                 p++ lS G+++   l++  l+  +   ll++DEp +g + + ++ +++ l+
  KIR60609.1 137 PVATLSGGQQQR-TLIARALAGEP--ELLVLDEPTAGVDAASQEAFAGALR 184
                 667789999999.89988887666..9**************9999998875 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   1.3e-07    0.0001      16      43 ..      25      52 ..      20      59 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.3e-07
      AAA_29 16 tieidlkgatlltGpsGsGKSTllDAiq 43
                ++ +d+ +++ + G++GsGKSTl+ A+ 
  KIR60609.1 25 SLAVDTGEVVAILGANGSGKSTLIRAVL 52
                567786779***************8876 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   8.5e-06    0.0067      25      45 ..      32      52 ..      22      60 .. 0.86
   2 ?    2.6   0.0       0.1        79     136     184 ..     140     184 ..     103     197 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.5e-06
                SEEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAil 45
                ++ ai+G+NGSGKs l+ A+l
  KIR60609.1 32 EVVAILGANGSGKSTLIRAVL 52
                5789**************983 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.1
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk 184
                 +LSgG+++ + +a  +A        l +lDe  a  D++  +++a  l+
  KIR60609.1 140 TLSGGQQQRTLIARALA----GEPELLVLDEPTAGVDAASQEAFAGALR 184
                 799*9876555554444....3345888999999999998888887765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.7e-06    0.0021      21      39 ..      33      51 ..      19      54 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.7e-06
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                +++I G NG+GK+T+++A+
  KIR60609.1 33 VVAILGANGSGKSTLIRAV 51
                789*************996 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   2.2   4.4e-05     0.035      23      51 ..      30      58 ..      21     196 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.4e-05
      AAA_16 23 rpelvllsGesGvGKsslvrellralekd 51
                ++e+v + G+ G+GKs+l+r++l  +  +
  KIR60609.1 30 TGEVVAILGANGSGKSTLIRAVLGLVPLH 58
                3389*****************99544444 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.6e-05      0.02      19      65 ..       7      56 ..       2      82 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.6e-05
                  EEEEEEET.TS-EEEEEGGGS-....SEEEE--TTSSHHHHHHHHHHHHHT CS
  FtsK_SpoIIIE 19 pvalgkei.sgnplvldlkkma...shllvaGatgsGKStalntLilSlat 65
                  +va g+++  g+p+  d + +      + ++Ga gsGKSt +++  l+l+ 
    KIR60609.1  7 TVAHGVVGyDGRPVLRDVSLAVdtgEVVAILGANGSGKSTLIRAV-LGLVP 56
                  56666667677777777665556666789*************995.45555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00036      0.28      16      41 ..      29      54 ..      23      69 .. 0.78
   2 ?    1.8   0.1      0.21   1.7e+02      52      98 ..     119     168 ..      86     199 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00036
      AAA_30 16 sgdrvavltGpAGtGKttalkalrea 41
                ++  v+++ G+ G+GK+t+++a+  +
  KIR60609.1 29 DTGEVVAILGANGSGKSTLIRAVLGL 54
                444699***************99665 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.21
      AAA_30  52 lAptgkaAkv.Laeelgieastiakllkrlk..grarlepgtllivDEag 98 
                 +A  ++ A v La+ +g + +t+    ++ +  +ra   + +ll+ DE  
  KIR60609.1 119 AAVDAALASVgLADRAGDPVATLSGGQQQRTliARALAGEPELLVLDEPT 168
                 56666766666888888888888887766668755555566999999943 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   8.6e-05     0.067       2      21 ..      34      53 ..      33      76 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.6e-05
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                vai+G   +GKStLi+a +g
  KIR60609.1 34 VAILGANGSGKSTLIRAVLG 53
                89***************987 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   0.00012     0.093      99     131 ..      31      63 ..      16      66 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
                  TSEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelelktgevs 131
                  +++++++G  G GKStLi a+l+   l+ g+vs
   KIR60609.1  31 GEVVAILGANGSGKSTLIRAVLGLVPLHSGSVS 63 
                  5899***************99987777777666 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3    0.0014       1.1      63      89 ..     158     184 ..     123     185 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0014
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllelle 89 
                  ++l++LDE  +++D+ s+++  ++l+
  KIR60609.1 158 EPELLVLDEPTAGVDAASQEAFAGALR 184
                 489**************9999887775 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00052       0.4       2      48 ..      34      81 ..      33     106 .. 0.84
   2 ?    0.1   0.0      0.86   6.7e+02      90     134 ..     152     199 ..     123     214 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00052
                EEEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE-.------EEE CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkssgvkvgGfyteevr.eggrrigFk 48
                v+i G  G+GK+Tl++ vl l+  +  +v+ f t+  r ++ +rig+ 
  KIR60609.1 34 VAILGANGSGKSTLIRAVLGLVPLHSGSVSLFGTPLRRfRQWKRIGYV 81
                6789***************99988888888888888887788888885 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.86
                 HHHH.HHH-EEEE--..-STTGGG-HHHHHHHHHHHTTTSEEEEE--S CS
    NTPase_1  90 rkal.seadviviDE..iGkmElkskkfkeaveevLksekpvlavihr 134
                  +al  e++++v+DE   G    + + f+ a++  L+ +  vl v h+
  KIR60609.1 152 ARALaGEPELLVLDEptAGVDAASQEAFAGALRGFLDGGGTVLLVAHE 199
                 444436778888888544555556667888999999988888888887 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00016      0.12      20      49 ..      25      54 ..      20      70 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00016
      AAA_27 20 dfsaeeadlhliyGpNEAGKstalrAisdl 49
                ++  ++ ++  i+G+N +GKst++rA+  l
  KIR60609.1 25 SLAVDTGEVVAILGANGSGKSTLIRAVLGL 54
                45556778899***************9876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00057      0.45       5      27 ..      31      53 ..      28      75 .. 0.87
   2 ?   -0.3   0.0       1.6   1.2e+03      85      99 ..     149     166 ..     119     198 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00057
      AAA_22  5 agilvvtGesGtGKTtllrrlle 27
                  ++++ G  G+GK+tl+r +l 
  KIR60609.1 31 GEVVAILGANGSGKSTLIRAVLG 53
                66889**************9875 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.6
      AAA_22  85 alrarav...ielliiDE 99 
                  l ara    +ell++DE
  KIR60609.1 149 TLIARALagePELLVLDE 166
                 333333345566888888 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0002      0.16       2      20 ..      33      51 ..      32      73 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0002
                CEEEEC-TTTCHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkl 20
                +v++ G++GsGK+tL++ +
  KIR60609.1 33 VVAILGANGSGKSTLIRAV 51
                799************9976 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00035      0.27       2      18 ..      34      50 ..      33      54 .. 0.92
   2 ?   -2.7   0.0       8.1   6.3e+03     127     161 ..     111     146 ..     103     165 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00035
      AAA_28  2 ivitGgestGKTtllea 18
                ++i+G+ ++GK+tl++a
  KIR60609.1 34 VAILGANGSGKSTLIRA 50
                89*************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 8.1
      AAA_28 127 Rredleereaiderlre..alrelgipviivpsgdve 161
                 R+ + ++r+a+d++l +  + +++g pv+ + sg  +
  KIR60609.1 111 RPPGRADRAAVDAALASvgLADRAGDPVATL-SGGQQ 146
                 5555666666666666544455555555555.54444 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0011      0.83      15      49 ..      24      58 ..      16      66 .. 0.84
   2 ?   -0.1   0.0      0.63   4.9e+02       5      34 ..     141     170 ..     138     178 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
  Mg_chelatase 15 leiaaaGgHnlllvGppGsGKtmlakrlpsllppl 49
                  + +a+  g  + ++G+ GsGK+ l++++ +l+p  
    KIR60609.1 24 VSLAVDTGEVVAILGANGSGKSTLIRAVLGLVPLH 58
                  5667777778899*****************99965 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.63
  Mg_chelatase   5 vkGqeeakraleiaaaGgHnlllvGppGsG 34 
                   + G +++++ +  a aG+ +ll++  p +G
    KIR60609.1 141 LSGGQQQRTLIARALAGEPELLVLDEPTAG 170
                   6788999999999********999999887 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00047      0.37       1      20 [.      33      52 ..      33      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00047
      AAA_33  1 lvllvGlpGsGKstlaerll 20
                +v + G++GsGKstl++ +l
  KIR60609.1 33 VVAILGANGSGKSTLIRAVL 52
                78899***********9986 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00034      0.27      18      59 ..      29      71 ..      23      77 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
    ATPase_2 18 epneiyfiYGpegsGKtaLlkeiienl.edkdkyviyyialre 59
                ++ e++ i G  gsGK++L++ ++    ++++   ++ ++lr+
  KIR60609.1 29 DTGEVVAILGANGSGKSTLIRAVLGLVpLHSGSVSLFGTPLRR 71
                678999***************9998876777777777777776 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00045      0.35       3      21 ..      36      54 ..      34      82 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00045
  Viral_helicase1  3 vhGvpGcGKStlirkllrt 21
                     + G+ G+GKStlir +l  
       KIR60609.1 36 ILGANGSGKSTLIRAVLGL 54
                     7899**********99976 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00044      0.34      19      42 ..      26      50 ..      20      54 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00044
      AAA_15 19 idlsee.ltvliGkNnsGKSsilea 42
                + ++   +  + G+N+sGKS++++a
  KIR60609.1 26 LAVDTGeVVAILGANGSGKSTLIRA 50
                4444444999************988 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00068      0.53      21      41 ..      32      52 ..      23      57 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00068
                EEEEEEESTTSSHHHHHHHHC CS
      NB-ARC 21 lvvalvGmgGvGKttlakqil 41
                 vva+ G  G+GK+tl++ +l
  KIR60609.1 32 EVVAILGANGSGKSTLIRAVL 52
                49**************99875 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1    0.0014       1.1     240     264 ..      26      51 ..      22      57 .. 0.89
   2 ?   -1.5   0.0         1     8e+02     324     351 ..     142     169 ..     138     172 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0014
                 EEE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeAl 264
                 +++ +G v++I G +  GKsTL++A+
  KIR60609.1  26 LAVDTGeVVAILGANGSGKSTLIRAV 51 
                 56778889****************97 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDts 351
                 SG   q   i++al  + +ll++DE t+
  KIR60609.1 142 SGGQQQRTLIARALAGEPELLVLDEPTA 169
                 899999999****************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1819.33
//
Query:       KIR60610.1  [L=322]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-73  246.0   0.0    4.6e-73  245.8   0.0    1.0  1  ZnuA      Zinc-uptake complex component A periplasmic


Domain annotation for each model (and alignments):
>> ZnuA  Zinc-uptake complex component A periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.8   0.0   2.6e-77   4.6e-73       1     256 []      41     318 ..      41     318 .. 0.88

  Alignments for each domain:
  == domain 1  score: 245.8 bits;  conditional E-value: 2.6e-77
                 EEESSHHHHHHHHHHHGGGCEEEECS-TTSTTTT----HHHHHHHHHSSEEEESSTTTSGTHHHHHHHHTTCCCEEEEETT..............TTCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxx RF
        ZnuA   1 VvattsplgdlvrqvaGdrvevtvLvppgadpHsyeptprdvrklaeAdllvynglelEtwldkllasssqatrvevidls..............egve 85 
                 V a ++pl+ ++++v+Gd+v+vt L++pga+pH+ e+tp++v ++++A+l++y   ++++++d+++++s++++  +v  ++              eg +
  KIR60610.1  41 VAAAFYPLQFVAERVGGDAVRVTNLTKPGAEPHDLELTPSQVGEVNQAELVIYL-KGFQPAVDEAITQSGGDRAFDVAGVQpllaasagghdhegEGAG 138
                 7899**************************************************.7**********999763333333222222222222222222334 PP

                 SEBCSS.......ESTGGGSHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGTEGEEEESSSTTHHHHHHTT-EEEEE CS
                 xxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ZnuA  86 eeeeee.......DpHiWlspknaiamveniadaLveadpanadtyeanaaayiekLeeldaeireelaeipeekrklvtthdafgylarayglevagi 177
                 +ee+++       DpH+Wl+p + + +++++a++L +adp++a++y+a+a+++ ++Le+lda++++ l++++  +r +v++h afgyla++y+le++gi
  KIR60610.1 139 QEEHADeegnggkDPHLWLDPTRLAGVADQLAERLGKADPEHAADYTARAKTLRAELEKLDADFAAGLKTCQ--RREIVVSHTAFGYLAERYQLEQVGI 235
                 44444488999**********************************************************888..556********************** PP

                 ESSSSS....HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHHHT-EEEEE-STSSSTSTTSTTSHHHHHHHHHHHHHHH CS
                 xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ZnuA 178 agiste....aaqiaalieeikeagvkaifveplaspklaetlaeeagvkvatlysldslgdegsaetYidmmranleslkea 256
                  g+++e    ++++a++++e++e+g+++if+e+l+spk+aet+a+e g+k+a+l++l++l+++g +++Y+++mr+nl++l++a
  KIR60610.1 236 TGLTPEtepaPQRLAEVAKEAREHGATTIFFETLVSPKVAETIAREVGAKTAVLDPLEGLSADGGGQDYLSVMRTNLQTLRTA 318
                 *************************************************************999999*************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2300.14
//
Query:       KIR60611.1  [L=85]
Description: hypothetical protein TK50_22120 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        2.3    9.0   8.8       0.26   12.0   1.1    2.4  2  ACC_epsilon  Acyl-CoA carboxylase epsilon subunit


Domain annotation for each model (and alignments):
>> ACC_epsilon  Acyl-CoA carboxylase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.1   1.5e-05      0.26       3      27 ..      10      34 ..       9      37 .. 0.88
   2 ?    1.2   1.4     0.035   6.3e+02      16      22 ..      48      54 ..      40      67 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.5e-05
  ACC_epsilon  3 lrVvrGnPtdeELAALtaVLaaraa 27
                 lr  r nPt + LAAL+ VL+ + a
   KIR60611.1 10 LRLARANPTTVFLAALVLVLVGLFA 34
                 78899***************98755 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.035
  ACC_epsilon 16 AALtaVL 22
                 AAL+a+L
   KIR60611.1 48 AALVALL 54
                 5666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 633.47
//
Query:       KIR60612.1  [L=113]
Description: antibiotic biosynthesis monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-08   35.1   0.0    1.4e-08   34.7   0.0    1.2  1  ABM       Antibiotic biosynthesis monooxygenase


Domain annotation for each model (and alignments):
>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   7.7e-13   1.4e-08       3      65 ..       2      63 ..       1      72 [. 0.92

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 7.7e-13
                EEEEEEEESTTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEETSTTEEEEEEEESSHHHHHH CS
         ABM  3 iviaeirvkpgqaeafldafaeavesllaeepGclgyellrstedpdevvvieeWeseaalea 65
                 v++++ ++++ a af ++  +a+ +l a+ pG+l+ ellr  +dp+++ +++eWes   +++
  KIR60612.1  2 LVTNRFVIDEDVAPAFTERAHAALAAL-AARPGYLRGELLRALDDPRHWCLVTEWESVGTYRR 63
                599**********************99.8****************************766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 832.66
//
Query:       KIR60613.1  [L=459]
Description: glycyl-tRNA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-23   83.2   0.1    2.4e-23   82.1   0.1    1.6  1  HGTP_anticodon  Anticodon binding domain
    3.6e-08   33.6   0.0    7.4e-08   32.6   0.0    1.4  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
  ------ inclusion threshold ------
      0.047   13.7   0.1       0.09   12.8   0.1    1.4  1  HypA            Hydrogenase/urease nickel incorporation, meta
      0.082   12.9   0.6        0.3   11.1   0.7    1.9  1  CpXC            CpXC protein
      0.094   12.7   0.5        8.4    6.4   0.1    2.5  2  zinc_ribbon_4   zinc-ribbon domain
       0.11   10.9   0.0       0.15   10.4   0.0    1.1  1  DUF530          Protein of unknown function (DUF530)
       0.11   12.5   0.3       0.21   11.6   0.3    1.4  1  Cytochrome_C7   Cytochrome c7 and related cytochrome c
       0.19   11.8   1.2        3.1    7.9   0.1    2.5  3  DUF2752         Protein of unknown function (DUF2752)


Domain annotation for each model (and alignments):
>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.1   1.1e-26   2.4e-23       1      93 [.     365     454 ..     365     455 .. 0.94

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 1.1e-26
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHHHH CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelveklke 93 
                     +v+v+pl++ +e+l + ak+la++Lr+  + ve+d +++ ig+++r+ d++g+pf+v+v++++l+++ vtvr+rdt++qer+ ld+++ +l+e
      KIR60613.1 365 KVAVLPLSR-NEALSPKAKQLAADLRKR-WVVEFD-DSQAIGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRNRDTMAQERIGLDQVERYLIE 454
                     79*******.666*************99.558887.799**************************************************9987 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   3.3e-11   7.4e-08      11     174 ..     156     331 ..     149     337 .. 0.67

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 3.3e-11
                   EEE-SSSHHHHHHHHHH.HEEEBGGSSEEEEEEEEEEBTTTSTBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHH.HHHHHHHHHTT.SCEEEEEE. CS
                   xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx. RF
  tRNA-synt_2b  11 yiLkPtneetfvelird.evlrskrLPlklyqiqtkyRdEksdsrGLlRvreFhqkdgyvfhaeaslddslrdli.kaisriferlglefraiiel. 104
                    +L+P+  +++   +++ e++  k+ P+ ++q++  +R+E      ++R reF+q + + f+ +++ d++ ++++ ++  +++ +lgl++  ++   
    KIR60613.1 156 HYLRPETAQGIFVNYKNvETVARKKPPFGIAQTGKSFRNEITPGNFIFRTREFEQMEMEFFVEPGT-DEQWHEYWlQERWNWYLDLGLSEENLRFYe 251
                   58999999987655554266666779**************985779******************95.55566655278889*******998887774 PP

                   ..GTTSCBTTSEEEEEEEEETTTS.EEEEEEEEEEEET.HHHHH.....TTEEEECTTS.SEEEEEEEEEEEEHHHHHHH CS
                   ..xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.xxxxx.....xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 105 ..msaksadykdkkefeavseslt.kgieigtiqklgt.rlser.....lgatvldenn.reksvimicaaigveRllsa 174
                      ++ s   k + ++e  ++  +  + e+  i ++ +  ls        ++++ d+++ ++  +++i  a g++R ++a
    KIR60613.1 252 hpKEKLSHYSKRTVDIEYKFQFGGsEFAELEGIANRTDfDLSTHskhsgVDLSYFDQAKgERWIPYVIEPAAGLTRAVLA 331
                   44343444445555666666632214556666766654444433111114446666665355577888888888886665 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     4e-05      0.09      64      96 ..      82     130 ..      54     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4e-05
                 EEEE--EEEETTTS-EEECHH.HHH................S-TTTSSS- CS
        HypA  64 ieevpvkvrCreCgkefelee.kal................rCpkCgsad 96 
                  e v+  ++C++C+k+f+ ++ + +                +Cp+Cg+++
  KIR60613.1  82 AEFVDPLTECQSCHKRFRADHlE-EayeakhgkpltsltelNCPNCGNKG 130
                 57788899**********88743.235889*****************976 PP

>> CpXC  CpXC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.7   0.00014       0.3       2      56 ..      90     139 ..      89     180 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
        CpXC   2 tCpaCgkefeaeiwtsidadedpelkeklldgslfeatCpkCgatakleapllyh 56 
                 +C++C+k+f+a++      +e  e+k+     sl+e  Cp+Cg++++++ p +++
  KIR60613.1  90 ECQSCHKRFRADHL-----EEAYEAKHGKPLTSLTELNCPNCGNKGTFTEPKMFN 139
                 68999999998864.....344455555555789*************99997754 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0038       8.4       3      13 ..      89      99 ..      88     103 .. 0.87
   2 ?    3.9   0.0     0.022        50       4      11 ..     122     129 ..     118     137 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0038
  zinc_ribbon_4  3 itCpsCkakye 13
                   ++C+sC+++++
     KIR60613.1 89 TECQSCHKRFR 99
                   69********8 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.022
  zinc_ribbon_4   4 tCpsCkak 11 
                     Cp+C+ k
     KIR60613.1 122 NCPNCGNK 129
                    36666555 PP

>> DUF530  Protein of unknown function (DUF530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.8e-05      0.15      89     143 ..      48     106 ..      16     131 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.8e-05
      DUF530  89 aqyfRikasakKnildrVksAiasHki..Aignleeya..elkCksCekkyklselele 143
                  q +R++++++ +++      i + k+  A g++ e++    +C+sC+k+++ ++le++
  KIR60613.1  48 RQWWRTMVQQRDDVVGLDSAVILARKVweASGHIAEFVdpLTECQSCHKRFRADHLEEA 106
                 5789999999999998878889999998899******944589***********99863 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   9.4e-05      0.21      12      57 ..      87     130 ..      74     144 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.4e-05
  Cytochrome_C7  12 tgykCtdCHsklfeska.kkkmaemekgkskk.aevesltCgaCHdgk 57 
                      ++C++CH+   ++   +++   +e+++ k  ++ ++l+C +C ++ 
     KIR60613.1  87 PLTECQSCHKRF-RADHlEEA---YEAKHGKPlTSLTELNCPNCGNKG 130
                    5678*****998.33332222...222222220333346699997665 PP

>> DUF2752  Protein of unknown function (DUF2752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.8   8.5e+03      17      37 ..      29      38 ..      27      40 .. 0.52
   2 ?    7.9   0.1    0.0014       3.1       2      15 ..     114     127 ..     114     129 .. 0.89
   3 ?    2.0   0.1       0.1   2.2e+02      13      24 ..     322     333 ..     321     334 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.8
     DUF2752 17 tRavhallhgdfaaAfrynpl 37
                tR            A+ y pl
  KIR60613.1 29 TR-----------SAWDYGPL 38
                44...........45555555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0014
     DUF2752   2 pfkaltGipCPGCG 15 
                 p+ +lt ++CP CG
  KIR60613.1 114 PLTSLTELNCPNCG 127
                 6778*********9 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.1
     DUF2752  13 GCGltRavhall 24 
                 + GltRav+a+l
  KIR60613.1 322 AAGLTRAVLAFL 333
                 569******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3418.60
//
Query:       KIR60614.1  [L=217]
Description: phytochelatin synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-21   77.2   0.1    2.7e-21   76.6   0.1    1.3  1  Peptidase_C39_2  Peptidase_C39 like family
  ------ inclusion threshold ------
      0.014   15.4   0.1      0.044   13.8   0.1    1.8  1  ssDNA_TraI_N     single-stranded DNA binding TraI N-terminal 
      0.042   14.1   0.0      0.083   13.1   0.0    1.5  1  BtrH_N           Butirosin biosynthesis protein H, N-terminal


Domain annotation for each model (and alignments):
>> Peptidase_C39_2  Peptidase_C39 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.1   4.6e-25   2.7e-21       1     144 []      54     192 ..      54     192 .. 0.84

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 4.6e-25
  Peptidase_C39_2   1 ldvplynQldelpngCeptslamvlsylgkkvtqnelakelktnssgdpntgfvgnit....dksglgvynepivklaekyglkvsdtrgssie 90 
                      ldv++++Q   +  +C+p++++++ls++gk+++ +++ake++t++   +n+  +++it    +++g  +y++  +  a+k+ +   + +++  +
       KIR60614.1  54 LDVRYEAQ--PNFFYCGPAAARNALSVQGKNIDVDTMAKEMGTTEA-GTNS--INDITpvlnKETGRKAYHST-EMPADKVDG---KRVEKLRA 138
                      79******..9999******************************92.3333..34444445578888888775.445666555...5788999* PP

  Peptidase_C39_2  91 evkkeidagkPvvvsvtt.fkplndgeikftssgHlvvitGYdekgkrvyvnDPa 144
                      ++++++d+g++vv++++  ++++ dg  +++++gH++ ++GY+e+gk+v+++D+a
       KIR60614.1 139 DIVRAVDDGRAVVANIAGtATDT-DGVSHSFEGGHYISVVGYSEGGKTVTIADSA 192
                      ****************9766665.7889*************************86 PP

>> ssDNA_TraI_N  single-stranded DNA binding TraI N-terminal subdomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   7.3e-06     0.044       4      31 ..     131     158 ..     128     161 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.3e-06
  ssDNA_TraI_N   4 qRYdrLAkefaasvkageeSVAQvsGpr 31 
                    R ++L ++++++v +g+  VA ++G++
    KIR60614.1 131 KRVEKLRADIVRAVDDGRAVVANIAGTA 158
                   68899*********************97 PP

>> BtrH_N  Butirosin biosynthesis protein H, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.4e-05     0.083      64     133 ..     122     190 ..     102     191 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.4e-05
      BtrH_N  64 glkvevketkdpeeawkalkeeLdaGrpvivqvdvyyLpYlpkesrlhfnaHnvvvyGyddeegealvsD 133
                 ++  +    k+ e++ +++ +++d+Gr v++ +     +     ++++ ++H++ v+Gy + +++++++D
  KIR60614.1 122 EMPADKVDGKRVEKLRADIVRAVDDGRAVVANIAGTATDTDGVSHSFE-GGHYISVVGYSEGGKTVTIAD 190
                 5555556677889999999999******99976666666666668998.********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1660.70
//
Query:       KIR60615.1  [L=580]
Description: beta-N-acetylhexosaminidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-79  268.4   0.0    5.1e-77  259.6   0.0    2.0  1  Glyco_hydro_20   Glycosyl hydrolase family 20, catalytic doma
    2.4e-23   83.3   0.0    5.9e-23   82.0   0.0    1.7  2  Glyco_hydro_20b  Glycosyl hydrolase family 20, domain 2
    5.8e-05   23.8   0.0    9.4e-05   23.1   0.0    1.3  1  Glycohydro_20b2  beta-acetyl hexosaminidase like


Domain annotation for each model (and alignments):
>> Glyco_hydro_20  Glycosyl hydrolase family 20, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.6   0.0   8.5e-81   5.1e-77       1     353 [.     205     520 ..     205     521 .. 0.91

  Alignments for each domain:
  == domain 1  score: 259.6 bits;  conditional E-value: 8.5e-81
  Glyco_hydro_20   1 fkyRGlmlDvaRhflsveeikrliDamaaaKlNvlHwHltDdqgwrleikkyPeLtekgakreskeseeelsgfYtkedireiveYAaergieVi 95 
                     f+yRG mlDvaRhf+ v++++r+iD +a +KlN lH+HltDdqgwr++++  P+L+ +g   +        +g Yt++d+r iv+YAa+r+++V+
      KIR60615.1 205 FAYRGAMLDVARHFFGVADVLRVIDHLARYKLNHLHLHLTDDQGWRIAVDGWPRLAAVGGATQVG---GGPGGAYTRADYRRIVSYAARRHVTVV 296
                     99********************************************************9988854...78899********************** PP

  Glyco_hydro_20  96 pEidmPgHaraalkaypelvtkekaeqsveqsvqvevkesvlnptneetyeflekvldevaelfpseyvHiGGDEvkkkqwkkspeiqalikeeg 190
                     pEid+PgH++aal+ayp+l+ +  a    +  +  ev  s+l+p+ e+ty f+++vl eva l p  ++HiGGDE+ k                 
      KIR60615.1 297 PEIDLPGHTNAALTAYPQLAPDGIAP---PPYTGTEVGFSYLDPGDERTYAFVADVLGEVAALTPGPWLHIGGDEAFKV---------------- 372
                     ********************994443...345577777789**********************************9433................ PP

  Glyco_hydro_20 191 lksveelqsyfvkrvekilkekgkkligWdeilekgkasklakknttvqsWrele.keaaeklakkgydvilspadalYlDfgqekkeeeeglei 284
                         ++  ++fv r++ i+++ gk+++gW+ i+  g+     ++  ++q+W +   +  + +++++g +vilsp +++YlD+++   ++  g ++
      KIR60615.1 373 ---PADAYARFVARTQGIVAATGKTVVGWHQIAPAGH-----ADGRVLQWWGTGGdDPVTAEAVRRGARVILSPGNRAYLDMKYA-PDTPIGHDW 458
                     ...3566789**************************8.....77789****99666778899*********************99.4557899** PP

  Glyco_hydro_20 285 atfaslekvynyepvakeaastslseeekkkkilGveaalWtEvirdsaeleyrvfPRlaalAErlWsk 353
                     a++ ++e+ y+++p ++        ++e    +lGvea lWtE +++ ae+e +++PRl alAE  Ws+
      KIR60615.1 459 AGLIDVERAYDWDPGTHLGG----VPAE---AVLGVEAPLWTESVTSLAEIEFMLLPRLPALAELGWSP 520
                     *****************976....3444...59**********************************96 PP

>> Glyco_hydro_20b  Glycosyl hydrolase family 20, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   9.8e-27   5.9e-23       3     123 ..      57     201 ..      56     202 .. 0.87
   2 ?   -3.6   0.0         3   1.8e+04      25      46 ..     331     352 ..     327     357 .. 0.75

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 9.8e-27
  Glyco_hydro_20b   3 aviPePqeveaqege.falgsevtivvee.aadeatadllaevlkaatgirlt.eakepgkgdirllalkd.............aelgaEgYrL 80 
                      +v+P+P++ve++ ++ f+l++++ + v++ +a++++a++la++l+ atg+ l+ +  +p ++ + l+ + +             a lgaEgYrL
       KIR60615.1  57 DVVPAPERVEPDPAAdFTLPADAAVRVSPdPAARDVAEQLAALLRPATGYPLPvTDATPPAEGLTLQLSGTpgpvaagagpgpvAALGAEGYRL 150
                      59*********88777****9999988775899999*****************7555555555544333335699999999999********** PP

  Glyco_hydro_20b  81 avdedtitiegkdtdGlfyGvqTLrqllpqa........aggtlpaveirD 123
                      +v++d ++i++++++Gl++GvqTLrqllp+a        a++++p+++i D
       KIR60615.1 151 DVTPDAVRITAATPAGLLHGVQTLRQLLPPAiesptpvaARWAVPGGVIVD 201
                      *******************************99999999889*******99 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3
  Glyco_hydro_20b  25 tivveeaadeatadllaevlka 46 
                        ++ ++ de+t +++a+vl +
       KIR60615.1 331 GFSYLDPGDERTYAFVADVLGE 352
                      5566677999999999999974 PP

>> Glycohydro_20b2  beta-acetyl hexosaminidase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.6e-08   9.4e-05     103     137 .]     145     177 ..     133     177 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.6e-08
  Glycohydro_20b2 103 dEsYtLsvksasgsakisansvlGalhGLeTlqQL 137
                       E Y+L+v + + ++ i+a +  G+lhG +Tl QL
       KIR60615.1 145 AEGYRLDV-TPD-AVRITAATPAGLLHGVQTLRQL 177
                      599*****.666.9********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 4525.13
//
Query:       KIR60616.1  [L=902]
Description: pyruvate phosphate dikinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-81  272.8   0.0    4.1e-81  272.3   0.0    1.2  1  PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
    2.1e-57  194.9   0.0    3.9e-31  108.5   0.0    4.2  4  PPDK_N           Pyruvate phosphate dikinase, PEP/pyruvate bi
    1.9e-25   88.4   1.7    5.8e-25   86.8   1.7    1.9  1  PEP-utilizers    PEP-utilising enzyme, mobile domain


Domain annotation for each model (and alignments):
>> PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.3   0.0   6.8e-85   4.1e-81       5     291 ..     540     891 ..     536     894 .. 0.93

  Alignments for each domain:
  == domain 1  score: 272.3 bits;  conditional E-value: 6.8e-85
                      TSCCCCCCCHCCCXBCEEEEEESSCHHHHHHHHCTXSSEEEEEHHHHCTTSCCHHHHHH...................HHHHHHHHHHHTTTSE CS
  PEP-utilizers_C   5 gklktllavtkdgkkikvlaNidtpedaekalengaeGiGLlRtEflfmareelpteee...................qaeaykkvleamngrp 79 
                      ++++++++ ++  +++ v aN+dt eda++a+++ga+GiGL+RtE++f+   +   e+                    q++++ ++++ m+g+p
       KIR60616.1 540 RAVHRIMTHADAARRLAVRANADTGEDAARARRFGAQGIGLCRTEHMFLGDRRELVERLiltrtdtersdalaallplQRDDFVEIFREMDGLP 633
                      5677889999999************************************887755555578999****************************** PP

                      EEEEXXXSSCCGGSGGC..........................HHHH.XSXGGGSSXTHHHHCCSHHHHHHHHHHHHHHCCCC.......EEEE CS
  PEP-utilizers_C  80 vvvRtlDiggdkelpel..........................keepeevNPmlGfRgirlglsepelfetqlrAllrasaag.......klei 140
                      v+vR++D++ +++lp l                          ++  +e+NPmlG+Rg+rlgl  p lf +q+rA+ +a++ +         ei
       KIR60616.1 634 VTVRLIDPPLHEFLPPLeqlavdvavaqergedvakeeallaaVRRMHEENPMLGLRGVRLGLVIPGLFAMQVRAIAEAAVRVtreggsaCPEI 727
                      *******************************************99999********************************966678888899** PP

                      EESSXXSHHHHHHHHHHHHHHHHHHHHCTCTXXTTXEEEEEEXSHHHHHTHHHHCTTSSEEEEXHHHHHHHHHTXXCCCHC....HHHH..... CS
  PEP-utilizers_C 141 mlPmvasveeleeakkiieevkeelekegvkkkkkvkvGiMiEvpsaalladklakevdFfSiGtNDLtQytlavdRdnee....vakl..... 225
                      m+P+v  v+ele+ ++ +e++ +e+  +      +v +G+MiEvp+aal+a ++a+ ++FfS+GtNDLtQ+  + +Rd+ e      +l     
       KIR60616.1 728 MVPLVGAVQELETVRAEAEKIIAEVVGD---SGVEVLIGTMIEVPRAALTAGQIAEAAQFFSFGTNDLTQMGWGFSRDDVEgaffWRYLelgif 818
                      *********************8888755...8999**********************************************6665333388999 PP

                      .SXTTTCHHCCCHHHHHHHHHHCC......XEEEEESCCCCSCCCHHHHHHCTXSEEEEXGGGHHHHHHHHHC CS
  PEP-utilizers_C 226 .ydplepavlrlikevikaaeekg......lkvgiCGelagdpsavellvglGldelSmsaasvpaaraalaq 291
                         p+e  ++ ++++++++a e+g      lk+g+CGe++gdp++v++++ +Gld++S+s+++vp+ar ++ +
       KIR60616.1 819 gISPFESIDRDGVGRLVRIAAEEGraarpeLKLGVCGEHGGDPESVHFFHSVGLDYVSCSPFRVPVARLEAGR 891
                      99******************************************************************98765 PP

>> PPDK_N  Pyruvate phosphate dikinase, PEP/pyruvate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   1.3e-14   7.9e-11       2      40 ..      24      61 ..      23      67 .. 0.92
   2 !  108.5   0.0   6.6e-35   3.9e-31      79     216 ..      69     293 ..      64     297 .. 0.97
   3 !   33.9   0.0   3.3e-12     2e-08     263     316 ..     301     352 ..     292     363 .. 0.87
   4 !    5.7   0.0    0.0013       7.6      67     127 ..     520     580 ..     458     602 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.3e-14
      PPDK_N  2 elvGGKganLaellneagipvPpgfaitadafrefleen 40
                +l+GGKganLae+ +++g+pvPpgf+it++a++ +l+++
  KIR60616.1 24 DLLGGKGANLAEM-TNLGLPVPPGFTITTEACKAYLATG 61
                79***********.66*******************9876 PP

  == domain 2  score: 108.5 bits;  conditional E-value: 6.6e-35
      PPDK_N  79 eeleeaikeayeelgkkfgde..elpvaVRSSataEDlpkasfaGqqdtyLnvggeeevle...................................... 137
                  ++e++++++++ +g+++gd   +l+v+VRS+      +k s++G+++t+Lnvg +++ +                                       
  KIR60616.1  69 GQIEAHLESLERGMGRRLGDPhdPLLVSVRSG------AKFSMPGMMETVLNVGLNDRSVVglaaqaggnerfawdsyrrliqmfgktvcevpgeefeh 161
                 58999***************9999********......9*******************9999************************************* PP

      PPDK_N 138 ...................................................aikavfaSlfnerAilYrkekgldheevalavvvqkmvnsdlg...as 182
                                                                    ai+avf+S++ erA+lYr++++++  ++++av+v +mv+++lg    +
  KIR60616.1 162 aldeakrargttsdldldaddlrglvdaykkiflkhtgrdfpqepreqldlAIRAVFESWNAERAVLYRRQERIP-ADLGTAVNVVAMVFGNLGpdsGT 259
                 ***************************************************************************.*********************** PP

      PPDK_N 183 GVafsldpetG...fkdevlinasyGlGeaVVaGrvt 216
                 GVaf++dp++G     + +l na   +Ge+VVaG+++
  KIR60616.1 260 GVAFTRDPASGaqgIYGDYLANA---QGEDVVAGIRN 293
                 ***********777888999999...********986 PP

  == domain 3  score: 33.9 bits;  conditional E-value: 3.3e-12
      PPDK_N 263 laLsdeeveeLaeiakkiekhygtpmdiEfaideeegklyllQaRpetrtsekk 316
                   L+++  +eL  i  ++e hy++  diEf+i+   gkl++lQ+R ++rt +++
  KIR60616.1 301 ERLDKRSYDELLGIMARLEGHYRDLCDIEFTIE--RGKLWMLQTRVGKRTAAAA 352
                 45899999*************************..**************99876 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0013
      PPDK_N  67 eirelilsaelPeeleeaikeayeelgkkfgdeelpvaVRSSa.taEDlpkasfaGqqdtyL 127
                 e+ +++  +  P+e ++a+ +a+ ++ ++ +d++ ++aVR  a t+ED+++a  +G q   L
  KIR60616.1 520 EVVRYFEGTLDPDEADDALVRAVHRIMTH-ADAARRLAVRANAdTGEDAARARRFGAQGIGL 580
                 66777777778999************875.55569******99799*******999987655 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   1.7   9.7e-29   5.8e-25       4      73 .]     426     507 ..     423     507 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 9.7e-29
                    S-EEEEES---HHHHTTS-GEEEEEES--TTHHHHHHHHHHTT--EEE--SSHH.............HH--TEEEEEETTTT CS
  PEP-utilizers   4 egvILvaeetspsdiagldkaaGivterGGmtSHaAivArelgiPaVvgvgeati............elkegdlitvDgstG 73 
                    e vILv++et+p+d+ g+ +a+Gi+t+rGG+tSHaA+vAr++g+ +V+g++e+ +            +++egd++++Dg+tG
     KIR60616.1 426 EAVILVRRETNPDDLNGMIAAKGILTSRGGKTSHAAVVARGMGKTCVSGADEIDVnvpakrfsvagqTVSEGDVVSIDGTTG 507
                    459***************************************************9**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (902 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 6149.53
//
Query:       KIR60617.1  [L=169]
Description: hypothetical protein TK50_22160 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-16   57.7   0.1    1.2e-15   57.1   0.1    1.3  1  Robl_LC7  Roadblock/LC7 domain


Domain annotation for each model (and alignments):
>> Robl_LC7  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.1   6.5e-20   1.2e-15       4      90 ..      13      98 ..      10      99 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 6.5e-20
                HHHHHCCHHCTECEEEEEETTS-EEEECCSSSS-HHHHHHHHHHHHHHHHHHHHHCTSSSECEEEEEETTEEEEEEECTTTEEEEEE CS
    Robl_LC7  4 elleelqsvpgvrgalvvskdGlviatstldnddadqlAalasgllsaakaaarelgegelkelliegkkgelyltpagegalLvvl 90
                el  + q+ p+v g ++   dGl+i++ +l+ +da +lAala++ +++++++a++ + ge++e+++ +++g ++++pag++alL+++
  KIR60617.1 13 ELRGLRQRRPEVAGGVLAGTDGLLISS-DLPTTDATHLAALAAASFGLGHRVADTVRHGEFQESVVFTARGCVVTYPAGRHALLTLV 98
                6778899********************.********************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1182.58
//
Query:       KIR60618.1  [L=116]
Description: glyoxalase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-28   99.1   1.3    2.5e-28   99.0   1.3    1.0  1  Glyoxalase_6  Glyoxalase-like domain
  ------ inclusion threshold ------
      0.016   15.4   0.0      0.031   14.5   0.0    1.4  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge


Domain annotation for each model (and alignments):
>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   1.3   2.8e-32   2.5e-28       2     107 .]       8     112 ..       7     112 .. 0.89

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 2.8e-32
  Glyoxalase_6   2 vvldaadpaalaaFwaaalgweveree...aaledpegvgpaaedaatllfqrvpe..paknrvHldlavedldaevarlvalGArvlreprdgthg 93 
                   +++da+dpa+la++wa+alg++v++e+   ++       +  a++ + ++f +v    +++nr+Hldl+ +d +aev+rlv++GAr+++  ++++ +
    KIR60618.1   8 LTVDARDPARLARWWAEALGYRVVAERpgeVE------IRQSADRLPGIVFLPVSGdkQGRNRLHLDLRPADQEAEVERLVDMGARHVDVGQGDADR 98 
                   79*************************54444......444455556********9999999****************************9999877 PP

  Glyoxalase_6  94 rvlaDPeGneFcvv 107
                   +vlaDPeGneFcv+
    KIR60618.1  99 TVLADPEGNEFCVL 112
                   7***********96 PP

>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.5e-06     0.031       9     127 ..      12     110 ..       7     111 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.5e-06
                 ESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGEEEEEEEC CS
  Glyoxalase   9 vgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvkvvaepgr 107
                 ++d+++ +++++++LG ++v + +     + + i++  +    i ++  + ++ +++             ++ l   d+++ ++rl + g + v++ g 
  KIR60618.1  12 ARDPARLARWWAEALGYRVVAERP-----GEVEIRQSADRLPGIVFLPVSGDKQGRN-----------RLHLDLRPADQEAEVERLVDMGARHVDV-GQ 93 
                 68**********************.....5555555555555554444444444444...........56999999999***********888777.88 PP

                 HHCTEEEEEEEEETTSEEEE CS
  Glyoxalase 108 hyfgalysfyfrDpdGille 127
                    ++ +     Dp G+++ 
  KIR60618.1  94 GDADRTV---LADPEGNEFC 110
                 8888888...9999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 880.10
//
Query:       KIR60619.1  [L=411]
Description: deoxyguanosinetriphosphate triphosphohydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-22   80.1   0.1    3.1e-22   78.9   0.0    1.7  2  HD_assoc  Phosphohydrolase-associated domain
    4.2e-19   68.9   0.0      1e-18   67.7   0.0    1.6  2  HD        HD domain
     0.0016   18.0   0.0     0.0026   17.3   0.0    1.3  1  HDOD      HDOD domain
  ------ inclusion threshold ------
      0.017   14.7   0.1        0.2   11.3   0.1    2.5  2  Nudix_N   Hydrolase of X-linked nucleoside diphosphate N term


Domain annotation for each model (and alignments):
>> HD_assoc  Phosphohydrolase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.6   1.1e+04       9      29 ..      29      49 ..      24      52 .. 0.75
   2 !   78.9   0.0     7e-26   3.1e-22       2      92 .]     316     407 ..     315     407 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.6
    HD_assoc  9 aeiaeLkkflfenvyrhpevq 29
                 ++++L + +f+++  + +v+
  KIR60619.1 29 DRARVLHSAAFRRLAAKTQVH 49
                567788888888888888887 PP

  == domain 2  score: 78.9 bits;  conditional E-value: 7e-26
    HD_assoc   2 avseevaaeiaeLkkflfenvyrhpevqreeekarriireLfealledperllpeefrarleaaedd.araRvVcDyiAgmTDryalrlyar 92 
                 +v+++v+ae+a+Lk +++++v+r+p ++ ++e++r+i++eL++al+++++++l++ f+  +++a dd ar RvV+D++A++TD  a+++++r
  KIR60619.1 316 VVPRRVRAECALLKGLALRYVMRRPGARCRYERQRQILAELVSALTRRAPEALDPVFAPLWRDAPDDaARLRVVIDQVASLTDPAAVAWHER 407
                 799*********************************************999***************************************97 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   2.2e-22     1e-18       1     120 [.      60     205 ..      60     207 .. 0.89
   2 ?   -2.6   0.0       1.4   6.2e+03      79      93 ..     351     365 ..     292     394 .. 0.64

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 2.2e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHH..HHH...CTCCHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHTTCCHHH CS
          HD   1 rleHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekk..eee...fekflaHekvgaeilrevekrlgld.ledvaklirehheswe 93 
                 rl+HsleVa++ar+++ +lg  +d++++ +a+L HD+G++pfg+++e +  + +    ++f+++++  + ++r + k+l     ++ ++l r+ ++   
  KIR60619.1  60 RLTHSLEVAQIAREMGARLG--CDPDVVDTAGLAHDLGHPPFGHNGEAAldQ-LaasCGGFEGNAQTLRVLTRLEAKVLAPGgGSAGLNLTRASLDATA 155
                 789*****************..***************************762.146699999*****************666**************997 PP

                 HHHHH.....................H....HHHCCTSCHHHHHHHHHHHHH CS
          HD  94 gkkrp.....................r....glaerqlslearivklaDrla 120
                   k+p                     +    + ae   +lea+++++aD +a
  KIR60619.1 156 --KYPwprrpaggkfgvyaddrpvfdWlragAPAEGRRCLEAQVMDWADDVA 205
                 ..67777999999999999887776516678******************987 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.4
                 HHHHHHHHTTCCHHH CS
          HD  79 edvaklirehheswe 93 
                 +++a+l+++ +++ +
  KIR60619.1 351 QILAELVSALTRRAP 365
                 344555555555554 PP

>> HDOD  HDOD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.8e-07    0.0026      91     147 ..      56     111 ..      31     132 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.8e-07
                 -HHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHHHTTTHHHHHHHHHSHHHHHHHH CS
        HDOD  91 dlkklwehslavAlvarelaeelgledpeeaflaGLLhdiGklvllsllpeeleell 147
                  l++  +hsl+vA +are+ ++lg++  + + +aGL hd+G   + +  +  l +l+
  KIR60619.1  56 FLRTRLTHSLEVAQIAREMGARLGCDP-DVVDTAGLAHDLGHPPFGHNGEAALDQLA 111
                 3556678******************77.*************9988777777766665 PP

>> Nudix_N  Hydrolase of X-linked nucleoside diphosphate N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.17   7.6e+02      22      47 ..      23      48 ..      22      52 .. 0.85
   2 ?   11.3   0.1   4.5e-05       0.2      29      56 .]     345     372 ..     343     372 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.17
     Nudix_N 22 kdvYDreRYeeLreiaaellaevsdl 47
                + +Y+r+R + L   a   la+++++
  KIR60619.1 23 RSPYERDRARVLHSAAFRRLAAKTQV 48
                679*******9999999999988876 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.5e-05
     Nudix_N  29 RYeeLreiaaellaevsdlpaekvkelf 56 
                 RYe+ r+i ael+++ +   +e +  +f
  KIR60619.1 345 RYERQRQILAELVSALTRRAPEALDPVF 372
                 ********************99998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2946.92
//
Query:       KIR60620.1  [L=276]
Description: FAD-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-41  141.2   0.5    3.6e-41  140.4   0.5    1.4  1  SIP            Siderophore-interacting protein
    1.9e-31  108.8   0.0    3.8e-31  107.8   0.0    1.5  2  FAD_binding_9  Siderophore-interacting FAD-binding domain
  ------ inclusion threshold ------
       0.14   12.5   0.0       0.67   10.3   0.0    1.9  2  FAD_binding_6  Oxidoreductase FAD-binding domain


Domain annotation for each model (and alignments):
>> SIP  Siderophore-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.4   0.5     6e-45   3.6e-41       1     119 []     133     250 ..     133     250 .. 0.99

  Alignments for each domain:
  == domain 1  score: 140.4 bits;  conditional E-value: 6e-45
         SIP   1 adwvllagDeTAlPAiaaiLeelpadaqvravievpdaadelelsapaaveltwlvregaaaagelLaealrelelpagelyvwvagEaavvkalRrhl 99 
                 adw+ll+gDe+AlPAiaa Le+lpa+a +r+++ev+daa+e++l+++ +veltwl+r ++ + ge+L++a+r+l+ p+g+++++v+gEa+ v++lRr+l
  KIR60620.1 133 ADWHLLVGDESALPAIAAALERLPAGAPARVFLEVADAAEEQPLPSKGDVELTWLHRADR-PVGEALVAAVRALDFPPGTVHAFVHGEATFVRELRRLL 230
                 79**********************************************************.************************************** PP

         SIP 100 vkergldrkqvaamgYWrrg 119
                 + erg++r+ ++++gYWrrg
  KIR60620.1 231 RVERGVPREWLSISGYWRRG 250
                 ******************97 PP

>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8   0.0   6.4e-35   3.8e-31       2     120 ..      13     126 ..      12     127 .. 0.93
   2 ?   -3.4   0.0       1.8   1.1e+04      36      70 ..     163     194 ..     157     198 .. 0.53

  Alignments for each domain:
  == domain 1  score: 107.8 bits;  conditional E-value: 6.4e-35
  FAD_binding_9   2 vvrverlspslrrvtltgeelagfk.sdgtDqhikLllpepgqtepelppelteeglqeweelpederpvmRtYtvraldaeaeeldidfvlHgde 96 
                    v r+ r +p+ +r++l+geel+g++  ++tD+++kL++p++g t+pe p++l++ +     +lp++++p +R Ytvr++da+a+el+id v Hgde
     KIR60620.1  13 VLRTWRPTPHVIRLVLGGEELTGLPvGEHTDHYVKLVFPPDGVTYPE-PVDLAAIR-----RLPAEQWPRLRAYTVRSFDAAAGELTIDVVHHGDE 102
                    88999********************456*****************96.77766665.....68********************************* PP

  FAD_binding_9  97 gpaarwAaqAqpGdelaivgPgga 120
                    g+a++wAa+ +pGd + +vgPgga
     KIR60620.1 103 GVAGPWAARLRPGDPVRFVGPGGA 126
                    **********************97 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.8
  FAD_binding_9  36 Lllpepgqtepelppelteeglqeweelpederpv 70 
                    ++l+ ++++e + +p  ++ +  +w  l +++rpv
     KIR60620.1 163 VFLEVADAAEEQPLPSKGDVE-LTW--LHRADRPV 194
                    555555555543233333333.336..67777765 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.42   2.5e+03      25      41 ..      31      47 ..      22      52 .. 0.74
   2 ?   10.3   0.0   0.00011      0.67      44      96 ..      73     126 ..      64     128 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.42
                   TS-----TT-EEEEEEC CS
  FAD_binding_6 25 kqklglpvGqhvflrlk 41
                   ++  glpvG+h   ++k
     KIR60620.1 31 EELTGLPVGEHTDHYVK 47
                   45579999999876665 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00011
                    TCCEEEEEE.BSSTTECCEEEE.EEE--TT-HHHHHHHCS-TT-EEEEEEEE-S CS
  FAD_binding_6  44 geaviRsYtpissenekGelel.lvkvypgGkmsqaLdelkigdtleikGPlGk 96 
                    +   +R+Yt+ s + + Gel + +v +  +G+      +l++gd +++ GP G 
     KIR60620.1  73 QWPRLRAYTVRSFDAAAGELTIdVVHHGDEGVAGPWAARLRPGDPVRFVGPGGA 126
                    55578**************99855566699*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2064.68
//
Query:       KIR60621.1  [L=623]
Description: DNA primase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-38  131.8   0.0      2e-38  131.3   0.0    1.2  1  Toprim_N        DNA primase catalytic core, N-terminal domain
    1.4e-32  111.4   0.0    2.9e-32  110.4   0.0    1.6  1  zf-CHC2         CHC2 zinc finger
    3.3e-25   89.1   0.1    7.1e-25   88.0   0.1    1.6  1  DnaG_DnaB_bind  DNA primase DnaG DnaB-binding
    4.7e-17   62.2   0.1    1.2e-16   60.9   0.1    1.7  1  Toprim_4        Toprim domain
    1.6e-15   57.0   0.5    6.5e-15   55.1   0.3    2.3  2  DnaB_bind       DnaB-helicase binding domain of primase
    8.4e-09   35.7   0.0    2.7e-08   34.1   0.0    1.9  1  Toprim_2        Toprim-like
    2.4e-07   30.9   0.1      7e-07   29.4   0.1    1.8  2  Toprim          Toprim domain
  ------ inclusion threshold ------
      0.012   15.9   1.4      0.038   14.3   0.1    2.5  3  Toprim_3        Toprim domain


Domain annotation for each model (and alignments):
>> Toprim_N  DNA primase catalytic core, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.0     9e-42     2e-38       1     128 []     131     259 ..     131     259 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 9e-42
                 HHHHHHHCSCHHHHHHHHHCTT--HHHHHHCT-EEE-SHSCHHHHHHHHCT-HHHHHCCTTCEECSTTT-EEETTTTEEEEEEE-TTS-EEEEEEEES. CS
    Toprim_N   1 fykeelkseegekaleYLkkRglseetiekFqlGyapkswdnllkllkkkkvseeelleagllskkekgklydrFrnRimfPikdakgkvvgFgGRal. 98 
                 fy+ +l +   + a+e+L++Rg++++ ++++ +G+ap+ wd l+k+l++++++++el++agl + +++g+l+drFr+R+m+Pi+d +g+ +gFg+R+l 
  KIR60621.1 131 FYQAQLGTAGARPAREFLAQRGFDRAAAQRYACGFAPDAWDLLTKHLRQQGFTHDELVTAGLSRPSRSGTLIDRFRRRLMWPIRDITGDPIGFGARKLf 229
                 7999*********************************************************************************************99 PP

                 SS-SS.SEEE--SBTTB-CCC-EETHHHHH CS
    Toprim_N  99 eeeekaKYlNspetelFkKselLYgldeak 128
                 ++++ +KYlN+pet+++kKs++LYg+d+ak
  KIR60621.1 230 DDDDGPKYLNTPETPIYKKSHVLYGIDQAK 259
                 888999*********************986 PP

>> zf-CHC2  CHC2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.0   1.3e-35   2.9e-32       3      95 ..       7     100 ..       5     103 .. 0.94

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 1.3e-35
     zf-CHC2   3 eevidelkeridivdvveeyvkLkkkg.kdyvalCPFHeektpsftvspekqfyyCfgCgagGdaikFlmeieklsfveaveklakklglelea 95 
                 +e i+ ++er+ i++v+++ v+L+ +g  + ++lCPFH+ek+psf+vsp+++++yCfgCgagGdaikFlm+ ++lsfve+ve+la+++g++l++
  KIR60621.1   7 DEDIALVRERTSIAEVISDTVTLRSAGgGNLKGLCPFHDEKSPSFNVSPARNVWYCFGCGAGGDAIKFLMDADHLSFVESVERLAARAGIQLRY 100
                 678999*****************9986268************************************************************9987 PP

>> DnaG_DnaB_bind  DNA primase DnaG DnaB-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.1   3.2e-28   7.1e-25       1     124 []     474     601 ..     474     601 .. 0.93

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 3.2e-28
  DnaG_DnaB_bind   1 vrealallLqhPelagelpdalaleafedpglallrelieal.aaepelntaaLlerlrg.tp...eeallaeLaveelqveeeeelerefadal 90 
                     +real+l+Lq+P lag+++da ++++ ++p + ++re+i+a+ +a     +a ++e++r+ +     +al+ eLave+l+++ e  + r+++ ++
      KIR60621.1 474 EREALKLALQEPVLAGPMFDAVEAAEYQHPVHVAVREAIAAAgGAAAATQGAVWVEAVRDaCAdlaAQALVGELAVEPLRIDGE-PDPRYVSVTI 567
                     69***********************99***************63334457888******9888999******************.6********* PP

  DnaG_DnaB_bind  91 arLqeqlverriaeLkaklrqgL.seeEkeelreL 124
                     arLq   v+ ri++Lk+k  q+  +++ k+e+ +L
      KIR60621.1 568 ARLQWGSVTGRIRDLKSKI-QRInPVSNKDEYFAL 601
                     *******************.***********9765 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.1   5.3e-20   1.2e-16       2      76 ..     267     337 ..     266     349 .. 0.90

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 5.3e-20
    Toprim_4   2 eiiiVEgyaDvlalekagiknvvavlggalspldgirpeklktenlveaekkvkevilaldgDaeGeataerlae 76 
                 ++++VEgy+Dv+a++ a ++++va++g+a+  +d+i+   l++  l++ ++ + e+i+++dgDa+G+++a+r+ +
  KIR60621.1 267 KVVVVEGYTDVMACHLADVPTAVATCGTAF-GADHIS--VLRR-LLLDTDDVAGEIIFTFDGDAAGQKAALRAFD 337
                 79****************************.******..5555.457799999*******************987 PP

>> DnaB_bind  DnaB-helicase binding domain of primase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.3   2.9e-18   6.5e-15       1      54 [.     380     433 ..     380     435 .. 0.96
   2 ?   -1.9   0.0       1.7   3.9e+03      24      54 ..     579     609 ..     579     611 .. 0.80

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 2.9e-18
                 HHHHHHHTTTT--TTSHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHT-- CS
   DnaB_bind   1 seFlierllegydlstpegkaravrealpllaripdpieRdlYirrlAerlgid 54 
                 ++F++++++++ydl+t++g+++a+r+a+p++a+i+d   R +Y+r+lA+ lg++
  KIR60621.1 380 VDFALRHVINRYDLDTVDGRVEAMRRAAPIVAKIKDREKRPEYVRKLAGDLGME 433
                 59*************************************************986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.7
                 HHHHHHHHTTSSSHHHHHHHHHHHHHHHT-- CS
   DnaB_bind  24 vrealpllaripdpieRdlYirrlAerlgid 54 
                 +r ++  ++ri+    +d+Y     e+l+++
  KIR60621.1 579 IRDLKSKIQRINPVSNKDEYFALFGELLSLE 609
                 5778888999977779999999999988876 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.2e-11   2.7e-08       1      87 [.     269     358 ..     269     360 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1.2e-11
    Toprim_2   1 vvfEgaiDalSlaqlgikektnvvalgGtalteaalkllery......pekkvvlalDnDkaGrkaakrlaellreagvrekirelpegkDwn 87 
                 vv+Eg+ D+++++ ++ +    +va+ Gta+   ++++l+r        + ++++ +D D aG+kaa r+ +  +    r  i+  p++ D+ 
  KIR60621.1 269 VVVEGYTDVMACHLADVP---TAVATCGTAFGADHISVLRRLlldtddVAGEIIFTFDGDAAGQKAALRAFDDDQRFVGRTFIAVSPDNMDPC 358
                 79***************9...9*******99999988888886544422247***************99876665555566666667666666 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1   3.1e-10     7e-07       2      99 ..     268     347 ..     267     350 .. 0.90
   2 ?   -3.0   0.0       3.9   8.8e+03      17      37 ..     592     610 ..     574     619 .. 0.49

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 3.1e-10
                 EEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHSTTEEEEEECTTTHHHHHHHHHHHHHHS....EEEEECSSSHHHHHHHHHHHHHHTHHHTTTEE CS
      Toprim   2 lvivEgpsdaktiakalgsgfqavtaslGhildletefkpvyeeiedkkkvlkalkelakrad....eiilatDpDreGeaiawellevlkellenkig 96 
                 +v+vEg++d+++ + a   +  +++a++G+++  ++               +++l++l+++ d    eii+ +D+D +G+++a++++    + +++ +g
  KIR60621.1 268 VVVVEGYTDVMACHLA---DVPTAVATCGTAFGADH---------------ISVLRRLLLDTDdvagEIIFTFDGDAAGQKAALRAF----DDDQRFVG 344
                 79**************...9****************...............9*******88888999******************99....55555666 PP

                 EEE CS
      Toprim  97 rve 99 
                 r++
  KIR60621.1 345 RTF 347
                 665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.9
                 THTSTEEEEEEESSSSEEEHS CS
      Toprim  17 algsgfqavtaslGhildlet 37 
                 +  s++ +++a+ G +l+le+
  KIR60621.1 592 V--SNKDEYFALFGELLSLEQ 610
                 2..344444555555555544 PP

>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       5.8   1.3e+04      65      79 ..      88     103 ..      84     108 .. 0.71
   2 ?   14.3   0.1   1.7e-05     0.038       2      93 ..     268     365 ..     267     366 .. 0.72
   3 ?   -2.1   0.0       2.3   5.2e+03      40      79 ..     436     475 ..     430     479 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.8
    Toprim_3  65 erlea.agieavllep 79 
                 erl+a agi+++++e 
  KIR60621.1  88 ERLAArAGIQLRYVEN 103
                 4555449999999986 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.7e-05
    Toprim_3   2 liivEGietaLsi....leartgaaviAllsa...anlkaiawp..ergkrvviaaDnDaandGreaaeklaerlea.agieavllepaegeDwndvlq 90 
                 +++vEG+ ++++     + + ++++++A ++a   + l+++ ++  + + +++  +D+Daa  G++aa ++ +  ++  g+  ++++p ++ D +d+  
  KIR60621.1 268 VVVVEGYTDVMAChladVPTAVATCGTA-FGAdhiSVLRRLLLDtdDVAGEIIFTFDGDAA--GQKAALRAFDDDQRfVGRTFIAVSP-DNMDPCDLRL 362
                 6899999999999654322333333333.2332335566665556469*************..***********99978888888888.555****999 PP

    Toprim_3  91 keG 93 
                 ++G
  KIR60621.1 363 AKG 365
                 887 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.3
    Toprim_3  40 rgkrvviaaDnDaandGreaaeklaerleaagieavllep 79 
                 +++r v+aa  ++ + G +a +++a  + +a+  ++l+e 
  KIR60621.1 436 PVQRAVLAAASGQPDGGAAAPARAARPAPGADSPMSLVER 475
                 6778888888888777888888998888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4290.29
//
Query:       KIR60622.1  [L=196]
Description: hypothetical protein TK50_22185 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   14.7   2.0      0.035   14.0   2.0    1.2  1  Serglycin  Serglycin


Domain annotation for each model (and alignments):
>> Serglycin  Serglycin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   2.0     2e-06     0.035      94     108 ..      28      42 ..      15      48 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2e-06
   Serglycin  94 sgsGsGsGsGsgsgs 108
                 +gsGsGsGsGsgsg+
  KIR60622.1  28 AGSGSGSGSGSGSGE 42 
                 344444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.44
# Mc/sec: 1350.61
//
Query:       KIR60623.1  [L=392]
Description: ROK family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-54  183.3   0.1      8e-54  183.1   0.1    1.0  1  ROK            ROK family
     0.0004   19.9   0.1    0.00079   18.9   0.1    1.5  1  HTH_24         Winged helix-turn-helix DNA-binding
     0.0014   18.5   2.8     0.0014   18.5   2.8    2.1  2  MarR_2         MarR family
     0.0063   16.6   2.3     0.0063   16.6   2.3    2.1  2  HTH_20         Helix-turn-helix domain
  ------ inclusion threshold ------
        5.9    6.8   7.9        2.2    8.1   3.0    2.6  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.1   0.1   2.2e-57     8e-54       2     293 ..      76     385 ..      75     386 .. 0.90

  Alignments for each domain:
  == domain 1  score: 183.1 bits;  conditional E-value: 2.2e-57
                 EEEEE-SSEEEEEEEETTS-EEEEEEE.EEHCCHHCCHHHHHHHHHHCCCHCCHTEEE.EEEEEESSEEETTCCEBSSGGC.GCCCCTTHHHHHHHHHT CS
         ROK   2 igidiGgtkialalvdeegeilarekv.etptetteetlvdaiaelvdeaerkadeli.avgigspGlisdksgkivstpn.itwenfdlvekleerln 97 
                 +++d+G+  i + +v+   e +a        ++ ++ tl+ + + l +   + a+e+  avgig+pG++s  +g  vs+p  ++w+ f++ e l  + +
  KIR60623.1  76 AAVDLGASSIDVEVVNGRLEPVAAYAEpADIRNGPKVTLQRVNELLHKFRVDGAYERLhAVGIGVPGPVSFRDGVPVSPPImPGWDRFPVRELLTREHG 174
                 58999999999999997777666555422334556667754444455555666666666**********9999999999976999************** PP

                 S-EEEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHHCHTC...... CS
         ROK  98 vpvevenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqgClEtlasgralekraqq...... 190
                 +p +v+nDvn +a +E   g ++ v+++++v +gtG+G G+ + g++++G  G+ag++GHiq+d +g+ c+CGn gClE+l sg+al+++a+       
  KIR60623.1 175 CPAVVDNDVNIMAIGERHGGVAHSVDDFLFVKIGTGIGCGIYLSGEVYRGTDGCAGDIGHIQVDTHGPTCSCGNAGCLEALFSGAALARDANAaarngs 273
                 ********************************************************************************************99***** PP

                 .........CGTTS-HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHH.HHHHHHHHHCCTTTTCCCT-EEEE-S-S CS
         ROK 191 .........kgekleakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadkll.eairklvkkylnkklevpvveivaaklg 279
                          +  +++a+++ + a +gd v  ++++  +++++  +a l+++++p++iv+gGg+    ++l ++ir+ v ++ +  +  +   +v ++lg
  KIR60623.1 274 spalaerlsTRGTVTAEDVAEGAIEGDVVCIQLIRDGGRRVGGVLAGLVSFTNPSMIVIGGGLARLGHILlAEIRSVVYRRSLPLATGNL-PVVLSELG 371
                 ********99999********************************************************99*****99888777776666.59****** PP

                 TTHHHHHHHHHHCC CS
         ROK 280 dkagllGaaaLake 293
                   ag++Gaa+La +
  KIR60623.1 372 PRAGVAGAAVLASD 385
                 ***********976 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   2.2e-07   0.00079       4      47 ..       7      50 ..       5      51 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.2e-07
      HTH_24  4 tdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                +++++L+lL++++  s +eL +rl ++++ +++ l+rL++ G++
  KIR60623.1  7 LHLRLLRLLRDEGAVSRAELGDRLEMPRPRLLAELERLVDLGYV 50
                679****************************************8 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   2.8   3.9e-07    0.0014       4      58 ..       5      59 ..       3      64 .. 0.87
   2 ?   -3.3   0.0       2.4   8.8e+03      42      54 ..     278     290 ..     276     294 .. 0.57

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.9e-07
                -HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE..ESSS CS
      MarR_2  4 tpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr..pgpe 58
                +p ++r+L  L++++   ++ +el +rl ++++++   l+rLv+ G+v +   ++++
  KIR60623.1  5 EPLHLRLLRLLRDEGA--VSRAELGDRLEMPRPRLLAELERLVDLGYVAEAglAASR 59
                7899***********9..******************************876454434 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.4
                 HHHHHHTTSEEEE CS
      MarR_2  42 lkrLvaaGLverr 54 
                  +rL+ +G v+ +
  KIR60623.1 278 AERLSTRGTVTAE 290
                 4566666666544 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   2.3   1.8e-06    0.0063       9      55 ..       5      51 ..       3      54 .. 0.94
   2 ?   -1.1   0.1      0.56     2e+03      26      37 ..     273     284 ..     259     296 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.8e-06
                -HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
      HTH_20  9 hPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLve 55
                +P  +r+lr+L+++++++ +el +rl++++  l   L+ L++ g+v 
  KIR60623.1  5 EPLHLRLLRLLRDEGAVSRAELGDRLEMPRPRLLAELERLVDLGYVA 51
                68889**************************************9996 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.56
                 -HHHHHHHHTS- CS
      HTH_20  26 taselaerldls 37 
                 + ++laerl+++
  KIR60623.1 273 SSPALAERLSTR 284
                 566777777432 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.0   0.00063       2.2       6      41 ..       9      44 ..       7      45 .. 0.90
   2 ?   -0.4   0.2      0.29     1e+03      21      35 ..     368     382 ..     367     383 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00063
  HTH_AsnC-type  6 rkILeaLqedaRisyaeLAervGlSestvlrRvrrL 41
                   +++L++L+  +  s aeL++r+ + +++ l+ ++rL
     KIR60623.1  9 LRLLRLLRDEGAVSRAELGDRLEMPRPRLLAELERL 44
                   59**********************999988877776 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.29
  HTH_AsnC-type  21 aeLAervGlSestvl 35 
                    +eL+ r G++ ++vl
     KIR60623.1 368 SELGPRAGVAGAAVL 382
                    79***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2700.07
//
Query:       KIR60624.1  [L=524]
Description: sugar ABC transporter ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.2e-47  159.2   0.0      7e-25   88.1   0.0    2.2  2  ABC_tran     ABC transporter
    1.9e-09   37.8   0.0     0.0038   17.1   0.0    3.3  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    3.3e-05   23.5   0.1     0.0035   17.1   0.0    2.4  2  AAA_29       P-loop containing region of AAA domain
     0.0001   21.8   0.2        1.4    8.3   0.0    3.2  3  SMC_N        RecF/RecN/SMC N terminal domain
    0.00013   21.9   0.2     0.0032   17.4   0.0    2.4  2  RsgA_GTPase  RsgA GTPase
     0.0016   18.2   5.6     0.0024   17.6   0.0    2.8  2  AAA_30       AAA domain
  ------ inclusion threshold ------
       0.01   15.9   0.0        1.1    9.3   0.0    2.5  2  MMR_HSR1     50S ribosome-binding GTPase
      0.021   15.3   0.0       0.05   14.1   0.0    1.5  2  AAA_23       AAA domain
      0.029   13.2   0.3         11    4.6   0.0    3.5  4  ABC_ATPase   Predicted ATPase of the ABC class
      0.033   13.8   2.0       0.57    9.7   0.3    3.0  2  AAA_25       AAA domain
      0.034   13.4   0.5       0.47    9.7   0.0    2.3  2  Zeta_toxin   Zeta toxin
      0.042   14.2   1.0       0.91    9.9   0.0    2.4  2  AAA_16       AAA ATPase domain
       0.13   12.5   0.0         45    4.4   0.0    3.1  3  SbcCD_C      Putative exonuclease SbcCD, C subunit
       0.15   12.5   0.2        2.2    8.7   0.2    2.4  1  AAA          ATPase family associated with various cellular a
       0.21   11.8   1.0        3.8    7.8   0.1    2.9  2  AAA_22       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.0   5.9e-28     7e-25       3     137 .]      41     189 ..      39     189 .. 0.96
   2 !   69.2   0.0   4.2e-22     5e-19       3     136 ..     293     445 ..     291     446 .. 0.89

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 5.9e-28
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................esdee 84 
                  v+l++++ge++ ++G+nGaGKStL+k+lag ++p++Ge++++g++++  ++   +r+ i+++ qe  l ++l+v+en                ++ ++
  KIR60624.1  41 GVQLEVRAGEVHCLLGQNGAGKSTLIKVLAGVHRPDSGEVQWRGQPVEFaNPQAAMRAGIATIYQELDLVDDLSVAENaflgheprrsgfirrgHMARR 139
                 799*********************************************99999********************************************** PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                   ++l +lg  e++  ++    + L    kq v++aral  +++l+++DEp+a
  KIR60624.1 140 TREILGRLGHGEIPPGRM---VRALPAAGKQIVSMARALSHEARLIIMDEPSA 189
                 **********99776666...69****************************75 PP

  == domain 2  score: 69.2 bits;  conditional E-value: 4.2e-22
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH..................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..................... RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren..................... 79 
                 +vsl +++ge+v+i G  G+G S L+++++g  + ++G++++ g+ l+       +r+ +g+ p+e + +  l ++e                      
  KIR60624.1 293 DVSLRVRAGEIVGIAGLVGSGRSELMETIYGARRADAGTVRMGGHALRPgSVGAAVRAGMGMAPEERKSQALL-LGEPifrnvtlatfgrfarlgftda 390
                 89***********************************************8888999*********95555444.55555555999999*********99 PP

                 .HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                   +++e+e ++++l+l     + v++  ++LSgG +q+v++ r ll   kllllDEpt
  KIR60624.1 391 gRERAEAEGVADSLELRP---RDVRRPVRTLSGGNQQKVVVGRWLLGGTKLLLLDEPT 445
                 999999********9888...5555567*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.2e-06    0.0038       2      25 ..      52      75 ..      51     134 .. 0.81
   2 !    6.8   0.0    0.0043       5.1     254     297 ..     175     218 ..     162     223 .. 0.87
   3 !    9.9   0.0   0.00047      0.57     226     295 ..     407     473 ..     375     479 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.2e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl 25
                 +l G Ng+GKS+L++ l +++r 
  KIR60624.1 52 HCLLGQNGAGKSTLIKVLAGVHRP 75
                689***************999763 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0043
      AAA_21 254 alkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 +  +++l++ DEp + L +  +  l+++++el++ g+ vi  +H
  KIR60624.1 175 LSHEARLIIMDEPSAVLAHDEVGNLFRIIRELTAQGIAVIYISH 218
                 444559************************************** PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00047
      AAA_21 226 ngdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvilt 295
                 ++++  +p+r lS G ++   ++   l      +lll+DEp  g +  + ++l+++++ l++ g+ v+l+
  KIR60624.1 407 RPRDVRRPVRTLSGGNQQK-VVVGRWLLGGT--KLLLLDEPTRGVDVGARAELYQVIRGLAAQGVGVLLV 473
                 6667777888888888888.55555554444..8***********************7777667777654 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.9e-06    0.0035      15      39 ..      42      66 ..      38      79 .. 0.81
   2 ?    3.9   0.0     0.037        45      10      40 ..     289     319 ..     285     323 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.9e-06
      AAA_29 15 htieidlkgatlltGpsGsGKSTll 39
                 ++e++  +++ l G++G+GKSTl+
  KIR60624.1 42 VQLEVRAGEVHCLLGQNGAGKSTLI 66
                67788755699*************9 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.037
      AAA_29  10 gtfdghtieidlkgatlltGpsGsGKSTllD 40 
                 g+f + +++++  +++ ++G  GsG S l+ 
  KIR60624.1 289 GEFADVSLRVRAGEIVGIAGLVGSGRSELME 319
                 67888889998666999**********9985 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0023       2.7      25      42 ..      50      67 ..      33      72 .. 0.79
   2 !    8.3   0.0    0.0012       1.4     157     212 ..     177     233 ..     166     240 .. 0.81
   3 ?    2.2   0.0     0.085     1e+02      26      44 ..     303     321 ..     291     329 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0023
                SEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlld 42
                ++ +++G+NG+GKs l+ 
  KIR60624.1 50 EVHCLLGQNGAGKSTLIK 67
                47899*********9987 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0012
                 S--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 157 kpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgvt 212
                 + a l ++De  a L + +v ++ ++++e + +   +i is+r e +++    v v 
  KIR60624.1 177 HEARLIIMDEPSAVLAHDEVGNLFRIIRELTAQgIAVIYISHRMEEIREIGDRVTVL 233
                 567799***********************9977688999999999888875555555 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.085
                 EEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAi 44 
                 +  i G  GSG+s l++ i
  KIR60624.1 303 IVGIAGLVGSGRSELMETI 321
                 667999***********99 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.6e-06    0.0032      98     130 ..      48      80 ..      36      85 .. 0.82
   2 ?    1.7   0.0      0.18   2.2e+02      97     131 ..     298     333 ..     273     338 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.6e-06
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktgev 130
                  ++++ +l+Gq G+GKStLi++l++ ++   gev
   KIR60624.1  48 AGEVHCLLGQNGAGKSTLIKVLAGVHRPDSGEV 80 
                  56999*****************99766666665 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.18
                  CTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  97 lkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  ++  +++ ++G  G G+S L++++ +  ++  g v+
   KIR60624.1 298 VRAgEIVGIAGLVGSGRSELMETIYGARRADAGTVR 333
                  444489999***************998888777775 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     2e-06    0.0024      19     118 ..      50     209 ..      42     219 .. 0.76
   2 ?   -0.6   3.6      0.77   9.2e+02      20      61 ..     303     363 ..     294     474 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2e-06
      AAA_30  19 rvavltGpAGtGKttalkalreaweaa.g......grviglAptgkaAkvLa.................e............elgieastiakllkrlk 81 
                  v++l G  G+GK+t++k+l+ +++ + g      ++v  + p++++ + +a                 +              g  a+++ ++l rl+
  KIR60624.1  50 EVHCLLGQNGAGKSTLIKVLAGVHRPDsGevqwrgQPVEFANPQAAMRAGIAtiyqeldlvddlsvaenAflgheprrsgfiRRGHMARRTREILGRLG 148
                 4899*********************99679999988899999999988889966655555555555554044445554444466679999999999999 PP

      AAA_30  82 .......................grarlepgtllivDEagmv.dtkqlaallkaaekagak 118
                                        +ra  ++++l+i DE + v + +++ +l++++++  a+
  KIR60624.1 149 hgeippgrmvralpaagkqivsmARALSHEARLIIMDEPSAVlAHDEVGNLFRIIRELTAQ 209
                 9********************9755555666*******99887677777777777664443 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.77
      AAA_30  20 vavltGpAGtGKttalkalreaweaa.g..................grviglAptgkaAkv 61 
                 ++ + G  G+G + +++++  a +a+ g                  +  +g+Ap+++ +++
  KIR60624.1 303 IVGIAGLVGSGRSELMETIYGARRADaGtvrmgghalrpgsvgaavRAGMGMAPEERKSQA 363
                 677899999*******999999998844655555555555555554444555555555555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00096       1.1       3      21 ..      53      71 ..      51      91 .. 0.85
   2 ?    3.9   0.0     0.045        54       2      24 ..     304     327 ..     303     340 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00096
                EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                +++G+  +GKStLi+ l g
  KIR60624.1 53 CLLGQNGAGKSTLIKVLAG 71
                689************9987 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.045
                 EEEEESTTSSHHHHHHHHHTS.TE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.ka 24 
                 v+i+G   +G S L+ ++ g+ +a
  KIR60624.1 304 VGIAGLVGSGRSELMETIYGArRA 327
                 89****************998555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.2e-05      0.05       7      38 ..      36      68 ..      33      72 .. 0.76
   2 ?   -3.2   0.0       8.5     1e+04      35      54 ..     370     389 ..     370     416 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.2e-05
      AAA_23  7 frsfrdqeidFsk.gltlItGpNGaGKTTildA 38
                +r +++++++     + ++ G+NGaGK+T++  
  KIR60624.1 36 VRALGGVQLEVRAgEVHCLLGQNGAGKSTLIKV 68
                566666667774425889************976 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.5
      AAA_23  35 ildAiklaLygetprlsrks 54 
                 i++ ++la++g+++rl+ ++
  KIR60624.1 370 IFRNVTLATFGRFARLGFTD 389
                 56668999999999988764 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.06        72     242     265 ..      46      70 ..      33      78 .. 0.85
   2 ?    0.7   0.0      0.15   1.8e+02     335     368 ..     222     256 ..     213     260 .. 0.77
   3 ?   -2.9   0.0       1.8   2.2e+03     324     349 ..     419     444 ..     416     447 .. 0.84
   4 ?    4.6   0.0    0.0096        11     379     413 ..     459     492 ..     454     501 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.06
                 E-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAle 265
                 ++ G v  + G +  GKsTL++ l+
  KIR60624.1  46 VRAGeVHCLLGQNGAGKSTLIKVLA 70 
                 677889999************9885 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.15
                 HHHHTT-S.EEEEEGGGS-HHHH---HHHHHHS-G CS
  ABC_ATPase 335 ealeagak.llLiDEDtsAtNlmirDermqelvsk 368
                 e  e+g + ++L D  t+A+Nl  rD+  +elv+k
  KIR60624.1 222 EIREIGDRvTVLKDGRTTAANLPARDTPTSELVAK 256
                 5556665514677999*****************87 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.8
                 -HHHHHHHHHHHHHHTT-SEEEEEGG CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDED 349
                 SG   q + + + l  g+kllL+DE 
  KIR60624.1 419 SGGNQQKVVVGRWLLGGTKLLLLDEP 444
                 7777888888888999********96 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.0096
                 CHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEET CS
  ABC_ATPase 379 rvrelykklgvstilvvggsgdyldvAdtvilmee 413
                  +r l +  gv ++lv++ + + l +Ad+v++m+e
  KIR60624.1 459 VIRGL-AAQGVGVLLVSSEVPEVLGLADRVLVMRE 492
                 55666.788************************97 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.3   0.00048      0.57      31      55 ..      47      71 ..      42     219 .. 0.59
   2 ?    0.0   0.1      0.45   5.3e+02      68      98 ..     464     502 ..     454     520 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00048
      AAA_25 31 pagelallaGapgtGKttlaldlal 55
                +age++ l G+ g+GK+tl   la 
  KIR60624.1 47 RAGEVHCLLGQNGAGKSTLIKVLAG 71
                689***************9877664 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.45
      AAA_25  68 apeqgkVlyvsaEdsed.elrrRlravgeal.......r 98 
                 a + + Vl+vs E +e  +l+ R+  ++e +        
  KIR60624.1 464 AAQGVGVLLVSSEVPEVlGLADRVLVMREGRmvreapaG 502
                 457889*********887999999999987755543331 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00039      0.47      21      45 ..      54      78 ..      47      95 .. 0.84
   2 ?    1.1   0.1      0.17     2e+02      18      55 ..     303     340 ..     292     342 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00039
  Zeta_toxin 21 lgGqpGAGKselaellkdelerqgn 45
                l Gq GAGKs+l++ l+  ++++++
  KIR60624.1 54 LLGQNGAGKSTLIKVLAGVHRPDSG 78
                669************9998876555 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.17
  Zeta_toxin  18 lillgGqpGAGKselaellkdelerqgnvvrldpDdlR 55 
                 ++ ++G  G+G sel+e +  + +++ + vr+ +  lR
  KIR60624.1 303 IVGIAGLVGSGRSELMETIYGARRADAGTVRMGGHALR 340
                 56699************999988888888888776666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00076      0.91      20      86 ..      47     114 ..      37     197 .. 0.66
   2 ?    2.5   0.2      0.14   1.7e+02      18      54 ..     297     330 ..     289     350 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00076
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekdggif.lrgkcdql..esaipysalaqalareellrqll 86 
                 r+g  e+  l G+ G GKs+l++ l+   + d g +  rg+ +++  ++a+ ++ +a++  + +l+ +l 
  KIR60624.1  47 RAG--EVHCLLGQNGAGKSTLIKVLAGVHRPDSGEVqWRGQPVEFanPQAAMRAGIATIYQELDLVDDLS 114
                 555..344579***********999965555546666777777774333333344666665555555544 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.14
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekdggi 54 
                 rvr+g  e+v + G  G+G s l+++++ a ++d + 
  KIR60624.1 297 RVRAG--EIVGIAGLVGSGRSELMETIYGARRAD-AG 330
                 67777..899****************99544444.33 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.23   2.8e+02      52      89 ..     167     204 ..     157     205 .. 0.75
   2 ?    4.4   0.0     0.037        45      25      42 ..     410     427 ..     401     434 .. 0.87
   3 ?    2.0   0.0      0.21   2.5e+02      65      88 ..     437     460 ..     433     462 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.23
     SbcCD_C  52 alyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 + +s a++ ++  rl+++DE  + l ++ + +l+++++
  KIR60624.1 167 QIVSMARALSHEARLIIMDEPSAVLAHDEVGNLFRIIR 204
                 4555554457789*******999999999998888876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.037
     SbcCD_C  25 elsrssgtlSGGekqfla 42 
                 +++r ++tlSGG +q+++
  KIR60624.1 410 DVRRPVRTLSGGNQQKVV 427
                 5899**********9876 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.21
     SbcCD_C  65 rlvfLDEAFsklDeesiatllell 88 
                 +l++LDE   ++D   +a+l +++
  KIR60624.1 437 KLLLLDEPTRGVDVGARAELYQVI 460
                 799**********99999988876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.2    0.0018       2.2       2     116 ..      53     224 ..      52     231 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0018
                 EEESSTTSSHHHHHHHHHHH.........HTHEEEEEETTTCSSS...................................................... CS
         AAA   2 llyGppGtGKTllakavake.........lgvefleisgsellsk...................................................... 37 
                 +l G  G GK++l+k +a           +  + +e+  ++                                                          
  KIR60624.1  53 CLLGQNGAGKSTLIKVLAGVhrpdsgevqWRGQPVEFANPQAAMRagiatiyqeldlvddlsvaenaflgheprrsgfirrghmarrtreilgrlghge 151
                 68999**********999983333333221222333333333312344444444555555666777777777777777777777777777888888888 PP

                 .....STTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGST CS
         AAA  38 .....yvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkld 116
                      +v + ++  +++++ a++ + +   +++DE  a+  ++           v  L++ + +++ +   + vi +++r++++ 
  KIR60624.1 152 ippgrMVRALPAAGKQIVSMARALShEARLIIMDEPSAVLAHD----------EVGNLFRIIRELTAQ--GIAVIYISHRMEEIR 224
                 8888877777777777777777777555888888888887777..........588888888888883..588888888888876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0032       3.8       9      60 ..      53     107 ..      47     226 .. 0.60
   2 ?    0.0   0.1      0.79   9.4e+02       8      25 ..     304     321 ..     298     340 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0032
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee...erpevvfvtlpsst..sskdllrel 60 
                 ++ G+ G+GK+tl++ l+  +   ++  e   ++ +v f ++++ +  + +++++el
  KIR60624.1  53 CLLGQNGAGKSTLIKVLAGVHR--PDSGEvqwRGQPVEFANPQAAMraGIATIYQEL 107
                 688***********99887662..333334566666666666666665666666654 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.79
      AAA_22   8 lvvtGesGtGKTtllrrl 25 
                 + + G +G+G++ l++++
  KIR60624.1 304 VGIAGLVGSGRSELMETI 321
                 558899********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.51
# Mc/sec: 3099.96
//
Query:       KIR60625.1  [L=379]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-45  153.9  45.4    4.5e-45  153.9  45.4    1.3  2  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
       0.25   11.3   3.4        1.7    8.7   0.0    2.9  2  DUF543        Domain of unknown function (DUF543)


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1      0.53   4.7e+03     213     221 ..      63      71 ..      40      79 .. 0.50
   2 !  153.9  45.4     5e-49   4.5e-45       1     268 []      92     357 ..      92     357 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.53
  BPD_transp_2 213 gfnaiaavv 221
                   g+ ++++v+
    KIR60625.1  63 GLIGVLVVL 71 
                   333333322 PP

  == domain 2  score: 153.9 bits;  conditional E-value: 5e-49
  BPD_transp_2   1 gilnlltlaailaiaAlGlalvfgiaGvinlghggfmalG.ayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlv 96 
                   +il +l la++++ + +G+++v+ i+G+i+l++g+++al+  ++++l+ ++++     ++  al+vg+ vgl++gllv + k+ ++i+tl+++++++
    KIR60625.1  92 NILTILKLASVVGVVTVGMTFVI-IGGGIDLSVGAIVALAgVWATTLATQSYG--AGGMIFTALAVGLGVGLVNGLLVSYGKLVPFIATLAMMVAAR 185
                   5889*******************.****************5666666666666..6999999*********************************** PP

  BPD_transp_2  97 gltlllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAgla 193
                   gl++    +i+ +++++s+ + + g+a+++   +   +v++++++v+a ++ll+rt fGr+  avg+n+eaar++Ginv+r ++l++++sg++ g+a
    KIR60625.1 186 GLAA----EISDKQTQVSGNSVINGIASTSPLGI-PLLVYILAAVVIAGWVLLNRTTFGRRTVAVGGNPEAARLAGINVRRHTVLLYALSGLCCGIA 277
                   ****....55555555555555555555444433.56679********************************************************* PP

  BPD_transp_2 194 GallalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   +++l+++ +s+++ +   ++++aiaa+++Gg+      g+++g ++G +i++++++ l ++ g +te ++++ g ++++++
    KIR60625.1 278 AIMLTAQANSAQAAMANLYELDAIAAAIIGGTllsggrGTIVGSLLGVIIFSTITN-LFAINGLSTEAQNMVKGGIIVAAV 357
                   ********************************************************.77777778*************986 PP

>> DUF543  Domain of unknown function (DUF543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   1.2     0.038   3.4e+02      32      46 ..     152     166 ..     123     178 .. 0.76
   2 ?    8.7   0.0   0.00019       1.7       4      48 ..     284     329 ..     281     337 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.038
      DUF543  32 vglgllvGvvasvll 46 
                  ++gl+vG v ++l+
  KIR60625.1 152 LAVGLGVGLVNGLLV 166
                 567777777777776 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00019
      DUF543   4 penakssapse.sdldekwDaclsnllvkvglgllvGvvasvllfr 48 
                 ++n+++ a ++ ++ld+   a +  +l+  g g++vG +++v++f 
  KIR60625.1 284 QANSAQAAMANlYELDAIAAAIIGGTLLSGGRGTIVGSLLGVIIFS 329
                 455556666668********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       887  (0.0494729); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2514.96
//
Query:       KIR60626.1  [L=352]
Description: sugar ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-35  121.0   9.4    8.2e-35  120.6   9.4    1.2  1  Peripla_BP_4  Periplasmic binding protein domain
    1.4e-12   47.6   0.8    1.8e-12   47.3   0.8    1.2  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    5.7e-06   26.8   0.1    5.9e-05   23.5   0.0    2.2  2  Peripla_BP_3  Periplasmic binding protein-like domain
    8.2e-05   22.3   4.6    8.2e-05   22.3   4.6    2.7  2  TAT_signal    TAT (twin-arginine translocation) pathway signa


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6   9.4   1.8e-38   8.2e-35       1     257 [.      60     318 ..      60     319 .. 0.89

  Alignments for each domain:
  == domain 1  score: 120.6 bits;  conditional E-value: 1.8e-38
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CE CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerl 97 
                   ig++ ++++++++ a++++++++a ++ + ++    a++daa+Q a++++++a+++d+i++ p d+++l+++  +a++aGIpVv  d++  ++  + 
    KIR60626.1  60 IGFSAPAADHGWIAAITNNAKAQAGAYSDVKFTSVEAGADAAAQRAALSTLVAQKPDVIVLLPHDGKELNAFGLEAMKAGIPVVNLDRAFPDARAYR 156
                   899************************99888889******************************************************33444444 PP

                   EEEEC-HHHHHHHHHHHHHHHCTTH....EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEES CS
  Peripla_BP_4  98 ayvgfdneaaGelqaeylaeklggk...kgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltanp.ldgilaa 190
                     +  dn+ +G ++a  + ++l++k      +  + G  +   ++er +gf ++l++ +g+k+     +a+ +a+ +qqa++ l++a p +d+i+  
    KIR60626.1 157 LQIKGDNYGMGVAAATFIIDQLKAKgvsNPIIGEIPGIDSLELTQERSKGFADTLAA-SGFKVANR-RPAEFTADSGQQAATGLFQALPkIDAIWNH 251
                   499**********************88877778889999999999************.9***9985.4559***************6644******* PP

                   SCCHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSE.EEEE--HHHHHHHHHHHHHHHHTT- CS
  Peripla_BP_4 191 ndgmaegalealeaaglagkvvvtgqDatpealeaikdGtid.atvaqdpyelgyaavelavallkGk 257
                   +d+ ++g+l+a+++a+++  ++v g ++ +++ +  +d t+  atv+ +p  ++ +a+ la+ + +Gk
    KIR60626.1 252 DDDQGIGVLAAVNQANRKEFFMVGGAGSKKAMEDIQADNTVLkATVTYSPS-MASSAISLARLIGQGK 318
                   ****************99888677777777777777777777578888887.99*******9998876 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.8   4.1e-16   1.8e-12       3     204 ..      59     268 ..      57     324 .. 0.85

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 4.1e-16
                   EEEEEES-TTSHHHHHHHHHHH.HHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GG.HHHHHHHHHH.T-EEEEESS--B-TTTS CS
  Peripla_BP_1   3 klglvlpqldePffldlvkgit.kaakehgvdvlllaageeedla.kaidllkakgidgliiatsdts.fdditakaes.gipvialedaidapdgv 95 
                   ++g+  p  d+ + + +++ ++ +a+++ +v+ + ++ag ++ ++ +a++ l a+++d +++   d++  ++    a + gipv+ l++a+ ++ + 
    KIR60626.1  59 TIGFSAPAADHGWIAAITNNAKaQAGAYSDVKFTSVEAGADAAAQrAALSTLVAQKPDVIVLLPHDGKeLNAFGLEAMKaGIPVVNLDRAFPDARAY 155
                   68888899999999999876643899999************999999****************999887888777777778**********999666 PP

                   -EEEE.-HHHHHHHHH....HHHHHHHHHHT.GEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE- CS
  Peripla_BP_1  96 Pcvip.ddtqageest....qkLiaeghkrp.iallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaiva 186
                    + i  d++ +g  +      +L+a+g  +p i  ++g +s   ++er +Gf ++la++G+ v ++  a+ + d   +++a++ l++  P idai  
    KIR60626.1 156 RLQIKgDNYGMGVAAAtfiiDQLKAKGVSNPiIGEIPGIDSLELTQERSKGFADTLAASGFKVANRRPAEFTAD--SGQQAATGLFQALPKIDAIWN 250
                   5555426888887443133379999999**977899999999999****************8888877777766..67789**************** PP

                   SSHHHHHHHHHHHHHTT. CS
  Peripla_BP_1 187 indeaalGavlalkkeGr 204
                     d  ++G   a+++++r
    KIR60626.1 251 HDDDQGIGVLAAVNQANR 268
                   ********9999999997 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.13   5.9e+02     113     137 ..      81     106 ..      59     119 .. 0.76
   2 !   23.5   0.0   1.3e-08   5.9e-05       2      98 ..     176     268 ..     175     278 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.13
                   SCC.CSSSS--EEEE--HHHHHHHHH CS
  Peripla_BP_3 113 ela.alssPplTtvrqpleelGraaa 137
                   + a a+s+ ++T+v+  ++  +++aa
    KIR60626.1  81 AQAgAYSDVKFTSVEAGADAAAQRAA 106
                   55678999999999999999996554 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1.3e-08
                   .HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-S..EEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   2 ehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalP..tAviaasDelAlgvlqalrea 96 
                   ++L+++G  + ++  ++g + ++  +er +gf+++l++ g++++ ++ a+ ++++++ a+  l+ qal     P  +A++ ++D + +gvl+a+++a
    KIR60626.1 176 DQLKAKGVSNPIIGEIPGIDSLELTQERSKGFADTLAASGFKVANRRPAEFTADSGQQAATGLF-QAL-----PkiDAIWNHDDDQGIGVLAAVNQA 266
                   6788888888777778899999********************8888777776766666666553.454.....5227******************99 PP

                   T- CS
  Peripla_BP_3  97 gl 98 
                   + 
    KIR60626.1 267 NR 268
                   75 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   4.6   1.8e-08   8.2e-05       1      25 [.       7      31 ..       7      32 .. 0.94
   2 ?   -2.7   1.0       1.5   6.5e+03      12      17 ..     167     171 ..     165     173 .. 0.41

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.8e-08
  TAT_signal  1 klSRRdFLKgsAAaaAAaalggcaa 25
                +lSRR +L g+AA++A+a+l +c++
  KIR60626.1  7 DLSRRRLLFGGAALGAGALLTACTS 31
                58*********************97 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
  TAT_signal  12 AAaaAA 17 
                 + +aAA
  KIR60626.1 167 G-VAAA 171
                 2.3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2368.72
//
Query:       KIR60627.1  [L=397]
Description: dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-23   82.0   0.2      1e-22   81.2   0.2    1.4  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
    7.3e-12   45.3   0.0    1.5e-11   44.3   0.0    1.7  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 
    1.2e-05   25.9   0.4      3e-05   24.7   0.4    1.6  1  NAD_binding_3   Homoserine dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.2   1.7e-26     1e-22       5     113 ..       1     116 [.       1     122 [. 0.96

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 1.7e-26
                   EETTSHHHHHHHHHHHHTTTTE......EEEEEECSSHHHHHHHHHHTTHE.EESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESS CS
  GFO_IDH_MocA   5 iiGaGkigskhlrplnesqrle......evvalldpdaeraeavaesfgve.aysdleelladpeidavivatpngtheelakaaleagkhvllEKP 94 
                   ++G+ ++g  h ++++  +r +      +++ ++ +d+ +  ++a+++g++   +d+++l++++eid+v ++tp ++h+e+a+aal+agkhvl+EKP
    KIR60627.1   1 MVGYAFMGAAHSQAWRTVNRVYdlpaqvRMALVCGRDTGKVAEAADRLGWDaHTTDWRRLVESDEIDVVDICTPGDSHAEIALAALAAGKHVLCEKP 97 
                   89**9*************99999***9999*********************89999***************************************** PP

                   S-SSHHHHHHHHHHHHHHT CS
  GFO_IDH_MocA  95 lattveeakelvelaekkg 113
                   la tv+ea+e++++a  ++
    KIR60627.1  98 LANTVAEAREMAAAAVAAQ 116
                   *************998776 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   2.5e-15   1.5e-11       1      71 [.     138     210 ..     138     280 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 2.5e-15
                     HHHHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSH..HCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.S CS
  GFO_IDH_MocA_C   1 KelIengklGevvsvdvwtldtragaeakkrwkrrk..kksgGvlgdlgiHdiDllqwLfGqppsvvaalgrm 71 
                     + ++++g+lG++++v   +l+++  ++ ++  +r +  k ++G+lgd+g H+iD++q+ +Gq ++ v+a++ +
      KIR60627.1 138 RRMVAEGRLGTIRHVRAAYLQDWIVDPQFPLVWRLQkdKAGSGALGDIGAHIIDMTQYVTGQRITGVSAITET 210
                     679*************************999887768******************************999854 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.4     5e-09     3e-05      20     110 ..      26     115 ..       2     123 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 5e-09
                    SEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-S--HHHHTTHHHHHHTTEEEE-S--CGGG-HHHHHHHTSSSTTS CS
  NAD_binding_3  20 ielelvavadrdsllskdrkallasealtldlddliahldpdvvVEcasseavaelvlkaLkagkdvvtankgaladealyeeLreaaean 110
                    +++++++v+ rd+ + ++++  l+  a t+d+ +l++  ++dvv  c++ ++ ae++l+aL+agk+v+     a++  a  +e+++aa a+
     KIR60627.1  26 AQVRMALVCGRDTGKVAEAADRLGWDAHTTDWRRLVESDEIDVVDICTPGDSHAEIALAALAAGKHVLCEKPLANT-VAEAREMAAAAVAA 115
                    57999*******7778888999***************7789987777*********************99999998.55555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2600.71
//
Query:       KIR60628.1  [L=403]
Description: myo-inositol-1-phosphate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-44  150.4   0.0    3.7e-41  141.6   0.0    2.9  1  NAD_binding_5   Myo-inositol-1-phosphate synthase
    1.1e-23   83.6   0.0    1.5e-23   83.1   0.0    1.2  1  Inos-1-P_synth  Myo-inositol-1-phosphate synthase
  ------ inclusion threshold ------
       0.23   11.3   4.7       0.24   11.3   0.6    2.4  2  TIP39           TIP39 peptide


Domain annotation for each model (and alignments):
>> NAD_binding_5  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.6   0.0   6.2e-45   3.7e-41       1     305 [.       3     361 ..       3     372 .. 0.93

  Alignments for each domain:
  == domain 1  score: 141.6 bits;  conditional E-value: 6.2e-45
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5   1 lGvllvGlgGnngtTlvagvlankkglswetkeglkkanylGsvtqsstirlGkdeeegedvyvpikdllplvnpndlvfgGwDisslnlaeamer 96 
                    +Gv+lvG++G+++tT + g la + gl+ +t          G+vt++s++r                     +++ dlvfgG+D+ +++la+++e 
     KIR60628.1   3 TGVWLVGARGSVATTSIVGALALRAGLTGPT----------GCVTELSELRG---P--------------AWPSFADLVFGGHDVAATPLAKRAEA 71 
                    69*****************************..........*********98...2..............357899*************9987776 PP

                    ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5  97 ...akvldkdlqeqlkpelekikplksvydkdfiaanqeeradnvlkgkskleqleqirkdireFkkknkldkvivlwtanTEryievipgvndtl 189
                       a v+  +l+ +l +el+++ +                r   v  g+ +++ +  + +d+  F+++++ld+v+v++++ TE  ++ +p  + + 
     KIR60628.1  72 ladAGVVPARLVAALGEELAAVDDD--------------VRPAPVD-GT-QADRAAAVVADLAAFRERHGLDRVVVVNVSATEPAARPHPA-HADP 150
                    666*****************99433..............2222222.22.5666777889*******************************.**** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx................................. RF
  NAD_binding_5 190 enllkaikeneeeispstiyavAailegvpyingsPqntl.vpglvelAekkgvfiaGdDfKt................................. 251
                    ++l +a+++  e ++ps++ya+Aa ++g+py++++P+++  +p+l  lA ++ v++aG+D Kt                                 
     KIR60628.1 151 DALAAALAAGGEVLPPSSLYAYAAFTAGCPYVDFTPSTGArLPALAALAARHAVPYAGHDGKTgetllksvlapmfamrhlavrswsgtnllgggd 246
                    ************************************************************************************************ PP

                    ........................................................................xxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5 252 ........................................................................lLAaPlilDLvllveLaqrvevkk 275
                                                                                             LAaPl+lDL+++++ a+ ++ + 
     KIR60628.1 247 gatlaqpeanaakvaskqrvlgeilgyvpqgdtridyveelgdfktawdlitfagflgtgmrleftwhgcdsALAAPLVLDLARITAAAHAAGRH- 341
                    ***************************************************************************************99999988. PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5 276 ekkkefkklesvlsllsyflKaPlvskgtk 305
                              + l+ l++f+K+Pl + ++ 
     KIR60628.1 342 ----------GPLTDLAFFFKDPLGPADSV 361
                    ..........**************987655 PP

>> Inos-1-P_synth  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   2.5e-27   1.5e-23       1     109 []     214     318 ..     214     318 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 2.5e-27
                     SHHHHHHHHHHHHHHTT-EEEEEEEEEEE-HHHHHHTTSHHHHHHHHHHHHHHHHHHHSS--EEE....EEEEE-GGGTTEEEEEEEEEEEEGGG CS
  Inos-1-P_synth   1 GqTklksvLaellverglkvksivslNilGnnDgknlseeerfksKkisKssvvddivkanellyvdhevvikYvpylgDsKvaldeieseiflg 95 
                     G+T+lksvLa++++ r l v+s+  +N+lG  Dg++l+++e +++K  sK++v+ +i+++ ++ +     +i+Yv+ lgD K+a+d i++ +flg
      KIR60628.1 214 GETLLKSVLAPMFAMRHLAVRSWSGTNLLGGGDGATLAQPEANAAKVASKQRVLGEILGYVPQGD----TRIDYVEELGDFKTAWDLITFAGFLG 304
                     99**********************************************************88765....9************************* PP

                     EEEEEEEEEEEEH. CS
  Inos-1-P_synth  96 gkntielkleceDS 109
                     + +++e++++  DS
      KIR60628.1 305 TGMRLEFTWHGCDS 318
                     *************8 PP

>> TIP39  TIP39 peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.3     0.067     4e+02       7      21 ..      62      76 ..      59      88 .. 0.73
   2 ?   11.3   0.6   4.1e-05      0.24       7      27 ..     104     124 ..     100     127 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.067
       TIP39  7 gaplakRslvlADDA 21
                ++plakR  +lAD  
  KIR60628.1 62 ATPLAKRAEALADAG 76
                7999********954 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.1e-05
       TIP39   7 gaplakRslvlADDAAFREka 27 
                 g++  +   v+AD AAFRE+ 
  KIR60628.1 104 GTQADRAAAVVADLAAFRERH 124
                 6777788899*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2787.15
//
Query:       KIR60629.1  [L=281]
Description: 4-hydroxybenzoate polyprenyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-14   53.8  21.9    1.7e-14   53.8  21.9    2.3  2  UbiA           UbiA prenyltransferase family
  ------ inclusion threshold ------
      0.039   13.7   0.0      0.056   13.2   0.0    1.2  1  Peptidase_C26  Peptidase C26


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8  21.9   1.9e-18   1.7e-14       6     161 ..      24     169 ..      22     218 .. 0.85
   2 ?   -5.3   7.5       1.9   1.7e+04      14      83 ..     197     264 ..     182     276 .. 0.40

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 1.9e-18
        UbiA   6 lvg.lalaaggspdlllllllllgtllaaaaanalNdyfDreiDadmertpnRPlvsGrispkealifaivllilgllllalllnpltallgllallly 103
                 l+g +a++a g  ++     l+++ +l+ +a++a Nd++Dr  Da    +p+RP++sGr+sp +al +a+ l ++g++l+a+  +  +a++++   +++
  KIR60629.1  24 LAGaAAAGALGRRTP----GLAAASVLLYWAGMAANDWADRGLDAV--ERPERPIPSGRVSPPAALGVAAGLTAAGVALAAAAGGRRAAAVAVPLAAAV 116
                 556344444555555....556677899******************..88******************************9999999999999999999 PP

        UbiA 104 vvYtglrlKrrtllgtvvggiafglppllgwaavtgslsllalllalavflltwaial 161
                 ++Y  l  K + + g  v +++ gl +llg+  ++g l   a+ +a+ v+++tw++  
  KIR60629.1 117 WAYD-LAAKNTAA-GPAVMAACRGLDVLLGA--TGGRL-SRAVPAAATVAAHTWTVTA 169
                 ****.55555555.**************775..56785.6778888888999999865 PP

  == domain 2  score: -5.3 bits;  conditional E-value: 1.9
        UbiA  14 ggspdlllllllllgtllaaaaanalNdyfDreiDadmertpnRPlvsGrispkealifaivllilglll 83 
                    p +  + ++l++++la+ ++  +  ++D   ++   r +  +  +G+   + al++ +  ++lgl++
  KIR60629.1 197 AVGPRPAAAPAALAAGYLARYGGAQVRVLADGSAGRV--RAAVGAGITGLPALQGALTARAGAGLLGLAV 264
                 2233333344444444444444444444444444444..3333333333333333333333333333333 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.3e-06     0.056      96     140 ..     120     164 ..     112     191 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.3e-06
  Peptidase_C26  96 aLiraalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhr 140
                     L ++ +++g  +++ CrGl++l  a+GG+l +++ ++ ++  h+
     KIR60629.1 120 DLAAKNTAAGPAVMAACRGLDVLLGATGGRLSRAVPAAATVAAHT 164
                    5777778888889**********************9877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1945.98
//
Query:       KIR60630.1  [L=217]
Description: sugar phosphate isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1421.75
//
Query:       KIR60631.1  [L=394]
Description: xylose isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-10   38.6   0.5    3.8e-09   36.3   0.4    2.2  1  AP_endonuc_2  Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
       0.14   12.5   2.2        2.8    8.3   0.0    2.9  3  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.4   4.2e-13   3.8e-09      18     182 ..      56     234 ..      46     311 .. 0.73

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 4.2e-13
                   TCSHHHHC.HHHHHHHHHHHHHHTTSEEEEEEECCC..HSTCTHC.......HTTCSHHHHHHHHHHHHHHHHHH......TBSEEEEEBCC...GB CS
  AP_endonuc_2  18 dlvpvsel.sdeelrelrkaldelglriaslslftr..fgypded.......erearreesvdalkraielaaaL......GapllvlhpGt...ag 95 
                    +v ++ + ++   r+lr+ l ++gl+++ l++f+   f++p++        +      e ++++ + ++  a+L       + + +l+      ++
    KIR60631.1  56 APVAAALAaDEGLRRRLRAELTARGLEVVTLNGFPYaaFQAPVVKhavyhpdW---TTPERLAYTLDLARVLADLlpddaaRGSVSTLPLAWrtpWD 149
                   4444544467778899***********99999886511555555467664431...23334555555555555557776543333333333244555 PP

                   CTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTCHHHHHHHHHHTTTTEEEEEEHHHHHHHTTTHHHHHHHHHGG CS
  AP_endonuc_2  96 agpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgdeelarlldavdspnvgvclDtgHlliaeedvddalraladr 182
                   a   + ++ +++ la++l  + + +  + v++++E+ +g  ve+   ++a+ll  +d+ ++gvclD +Hl  a e +++al +la  
    KIR60631.1 150 ADRADAARRRLDALAAGLAGIERDT-GRTVRVGFEPEPGCVVEST-GQAAALLAGTDPARLGVCLDLAHLACAWEEPAAALGRLAAA 234
                   5555555599999999999999997.599****************.***************************99999999999876 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.7   1.5e+04      63      77 ..       4      18 ..       3      35 .. 0.61
   2 ?    8.3   0.0   0.00031       2.8      69      97 ..     214     242 ..     210     253 .. 0.88
   3 ?    2.9   0.2     0.015   1.3e+02      55      93 ..     259     304 ..     241     311 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.7
                  HHTS-EEEEEEEEES CS
  Glyoxalase_4 63 aehgeglhhlaywvd 77
                  +++g++  hl+y ++
    KIR60631.1  4 RHGGGETVHLGYCTN 18
                  557778888888763 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00031
                   EEEEEEEES-HHHHHHHHCTTTEEEEEEE CS
  Glyoxalase_4  69 lhhlaywvddldaavarleeqGfevvqkg 97 
                   l hla++ ++  aa+ rl+++G++vv  +
    KIR60631.1 214 LAHLACAWEEPAAALGRLAAAGLPVVKVQ 242
                   78***********************9765 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.015
                   ESSTT-THHH.......TS-EEEEEEEEES-HHHHHHHHCTTTEEE CS
  Glyoxalase_4  55 plegpeflae.......hgeglhhlaywvddldaavarleeqGfev 93 
                   p+ +p fl++       h +     ay+ ddldaa+a++    ++v
    KIR60631.1 259 PWVEPRFLHQtraagcgHAADPADPAYAADDLDAALAAALPGAWRV 304
                   55566666666566666666667779**********9988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3044.21
//
Query:       KIR60632.1  [L=463]
Description: phosphodiesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-55  189.4   0.0    1.5e-55  189.2   0.0    1.0  1  Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosp


Domain annotation for each model (and alignments):
>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.2   0.0   8.5e-60   1.5e-55       1     357 []       5     370 ..       5     370 .. 0.92

  Alignments for each domain:
  == domain 1  score: 189.2 bits;  conditional E-value: 8.5e-60
                   EEEEEETT-BTTHHHHHGSTSHHHHHHHHHSEEESEEE-SSS-SHHHHHHHHHHSS-HHHHS--SSSEEETTTTEEEEEETTTTGGGGGCTTS-HHH CS
  Phosphodiest   1 vlvislDGlradlldrlaellpnlaaLakegvsapnlrpvfPtlTfpnhaslvTGlyPgeHGivgNtfydrktgeyvvfvtededaprwwqgepiwd 97 
                   ++v+ + Gl+++ll +    +p l++ a+ g++ap l +v P++T++ +++++TG  P+ HGivgN +y r++ge++ +++ ++    +++ge++w+
    KIR60632.1   5 LVVLDVVGLTPRLLAH----MPRLRSVADGGFTAP-LGTVLPAVTCAVQSTFLTGEPPAGHGIVGNGWYFRELGEVLLWRQHNA----LVGGEKLWQ 92 
                   699***********87....***************.***************************************988888855....5******** PP

                   HHHHTH.TTCEEEESE...TTTTSEBTTCT.SC...........TBHHSBTCT.CSTTS......CHHHHHHHHHHHHHHHCHTHSHHHHHCTSSES CS
  Phosphodiest  98 taakar.glkaaalfw...pgsevdystyyylvs..........etppryleddfnakv......pledkvdkavlqtwldaafakvvlekelekpd 174
                    a k + g+++a++ w   +g++vd++ + + v+          +t p++l+d+ +ak+      ++++  +   +++w+ +a+++  ++     pd
    KIR60632.1  93 AARKVEpGYTVANVCWwyaMGADVDWTVTPRPVYyadgrkepdcYTDPPELHDALTAKLgtfplfTYWGPGAGLPSSAWICRAAEQILAD---HAPD 186
                   *****9****9999998****************************************************99999999****999887776...99** PP

                   EEEEEECCCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EEEHTTSEEEGGGTSTGGHGEEEEECBHHS.SSEEEE CS
  Phosphodiest 175 lllvyleetDtvgHkfGpdspevedalrrvDkaigdLlealderglsaetniilvSDHGmadvsddkvielndlleekgllhlkdegkggakaliai 271
                   l+lvy++++D+  ++fGp sp+ ++a +++Dk++g L++a++ +      +++ +S++G++dv     +++n+ll+ +gll+++++       + ++
    KIR60632.1 187 LTLVYVPHLDYDLQRFGPSSPQAAAAAAELDKVLGPLIDAARAK----GATVVALSEYGITDV--ACPVDVNRLLRAEGLLRVYTQD-----GMEYL 272
                   *******************************************9....889************..889*******************.....99999 PP

                   EESTEEE.CCCTTHHHHHHHHHHTCHHCCHST.HTT..TEEEEEGGGS-GGGCH.STTS-SEEEEE-TTEEEESSTTCS.........SBS-SEE-- CS
  Phosphodiest 272 npkarelnrvaeaeaeevyaelkakleelrkk.ege..alavylkeaipkrlhy.kkrapdlvlvadpgwsitskdkpd.........eyeikgthG 355
                    p  +++++va++++++vy +  a++++++k   g     +v + +   +++ + ++r+++lvlva+p+ ++t++++ d          +ei++++G
    KIR60632.1 273 DPWTSRAFAVADHQIAHVYVRDPADVPAVAKLcAGLpgVAEVLDAD-GQAAYGLaHPRSGELVLVAEPDAWFTYYYWLDdarapdfarLVEIHRKPG 368
                   998777***********************97777775555555555.222333346***********************999999999999999999 PP

                   SS CS
  Phosphodiest 356 yd 357
                   yd
    KIR60632.1 369 YD 370
                   97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3509.13
//
Query:       KIR60633.1  [L=359]
Description: polyprenyl synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-47  161.6   0.0    2.5e-47  161.1   0.0    1.1  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.1   0.0   1.4e-51   2.5e-47       7     247 ..      43     301 ..      38     311 .. 0.88

  Alignments for each domain:
  == domain 1  score: 161.1 bits;  conditional E-value: 1.4e-51
                      HHHHHHHSSS--HHHHHHHHHHHHHS.CG.HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHC................TCHHH CS
  polyprenyl_synt   7 aleylveagGKrlRpllvllaaealk.ee.eeelekaavlawivellhaasLvhDDimDdsetRRGqpcahrl................vGnkl 82 
                      al+ +v agGKrlRp ++    +  + e+   e    +v+ +++el+ha+ L+hDDi D+s+ RRG+p++hr+                +G ++
       KIR60633.1  43 ALHRFVLAGGKRLRPQFCYWGWRGAGgEDdGGEGTPILVASAALELFHAFALIHDDILDHSDRRRGAPSVHRIfadlhtrsawrgdpeaYGRNT 136
                      6677788****************999533424567899*********************************555555555566666666***** PP

                      HHHHHHHHHHHHHHHHHHHH..STT.HHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC.SHHHHHHHHHHHTH.HHCHHHHHHHHHHTTHHHHH CS
  polyprenyl_synt  83 Aindgdfllarafellaklf..eks.lellelfsevllqtveGqlldleeekdddlskfsleeyleivkyKTa.ylfalpvalaallagasdee 172
                      A++ gd+  a+a ++++++   +++ l+  ++f+ + ++++ G++ldl +    d s   ++  l++++ K a y++  p++++a+lag s+e 
       KIR60633.1 137 ALLCGDLCAAWADQMFHECGlrRDElLRGYAVFALMRTEVIAGEYLDLVSG-VGDGS---VASALTVIRLKAArYTVTRPLQIGAALAGGSPEL 226
                      ******************999644479*********************555.46666...99****************************99** PP

                      HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HHHHHHHHHHTTSSHHHHH CS
  polyprenyl_synt 173 lealkdiglelGlaFQiqDDylDlfgdpevlgKpagtDiqegkctlpilkalelaspeqrkvlkeilgkkaekee 247
                      +eal+++g ++G aFQ++DD+l +fgdp+v+gK + +D++egk t+++  a + a+++q ++l+e++g+   ++e
       KIR60633.1 227 AEALAEFGDPVGDAFQLRDDVLGVFGDPQVTGKSVLDDLREGKPTVMMALARQSADRAQSARLRELFGNADLDDE 301
                      ********************************************************************6654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 3081.93
//
Query:       KIR60634.1  [L=571]
Description: glycosyl hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-80  268.9   2.9    5.8e-80  268.4   2.9    1.2  1  ThuA             Trehalose utilisation
    3.4e-38  131.6   0.5    7.6e-38  130.5   0.0    1.8  2  DUF1080          Domain of Unknown Function (DUF1080)
    8.6e-32  110.1   8.0    8.6e-32  110.1   8.0    1.5  2  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    5.1e-27   94.4  15.9    2.4e-13   50.6   1.2    4.6  4  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
  ------ inclusion threshold ------
       0.54   10.6   3.4         41    4.6   0.1    3.2  3  ET               ET module


Domain annotation for each model (and alignments):
>> ThuA  Trehalose utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.4   2.9   1.6e-83   5.8e-80       2     210 .]      37     247 ..      36     247 .. 0.99

  Alignments for each domain:
  == domain 1  score: 268.4 bits;  conditional E-value: 1.6e-83
                 EEEEE-..-.SHHHH-...HHHHHH-HHHT-EEEEETTS.G--HHHHHT-SEEEEE-G..GS-HHHHHH.HHHHHHTT-EEEEEGGGGS.....HHHH. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThuA   2 VLvfsgtagerhdsieaaieaieklgkengfevdatedaavfteenLaqydvvvflstegevldaaqeaalqryveaGgGfvglhsAadaeerskwfsg 100
                 VLvfs+tag+rhdsi ++++ai++lg++n+f+v+atedaa+ft++nLa++++v+fl+t+g+vl++ q+aa+++y+ aGgG+vg+hsAad+e++++++++
  KIR60634.1  37 VLVFSKTAGFRHDSIAVGTQAIRDLGAANSFTVTATEDAAQFTTANLARFEAVIFLNTTGDVLNDSQQAAFESYIGAGGGYVGVHSAADTEYNWPFYGN 135
                 9************************************************************************************************** PP

                 HH-SEEEEET............TSGGGTT--.SEEEEEEEEE-S---SE...EEEEE.................ETE...TTEEEEEE----TTSGGG- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThuA 101 LiGarfvghppvqeatvkvedrshpateglpeewertdewYnfkpnprg.vhvlatvdestydp..ngadhPiaWcreydgkGrvFytalGhteesyee 196
                 L+Ga f++hp++q+a+vkvedr+h at++l ++w+rtdewY f++n r+ +hvla++des+y++  +g dhP aWc++y g Gr+Fyt+ Gh+++sy+e
  KIR60634.1 136 LVGAWFASHPAIQQARVKVEDRAHAATAHLGQTWTRTDEWYDFRTNARStAHVLASLDESSYSGgaMGGDHPHAWCKTYSG-GRSFYTGGGHSQSSYSE 233
                 *******************************************9999999*************778*************99.***************** PP

                 HHHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxx RF
        ThuA 197 pefrkhllgglkWa 210
                 ++fr+hllgg+++a
  KIR60634.1 234 AAFRSHLLGGIRYA 247
                 ************97 PP

>> DUF1080  Domain of Unknown Function (DUF1080)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   0.0   2.1e-41   7.6e-38       1     185 []     260     434 ..     260     434 .. 0.90
   2 ?   -2.0   0.1      0.93   3.3e+03      84     109 ..     505     533 ..     482     557 .. 0.61

  Alignments for each domain:
  == domain 1  score: 130.5 bits;  conditional E-value: 2.1e-41
                 TEEEST.SSTTTTEEETTSSS..TTEEEETTEEE.CGG.ESSS--EEESSEBSSEEEEEEEEEETTTEEEEEEEES.CTTTSSGGGTSCEEEEE-TTTH CS
     DUF1080   1 gwksLfnGkdldgWkgkegkatseatkvedGvlvaaessgkgggflitkkefgdfeLklefkiseggnSGillrsq.keekgkdavagyevqildseke 98 
                 g+++L nG  ++gW++++ + ++      d +l    ssg+ g + +++k+f+++ Lkl+++i    nSG+++    + + +  + +gyevqi+ ++ +
  KIR60634.1 260 GYTALYNGA-TTGWSQAGPGGFT----NTDATLS---SSGGLGLYWYSAKQFTNYSLKLDWRIPGDDNSGVFVGFPaSSDPNSAMTNGYEVQIDATDSD 350
                 6899****6.9******888776....4799998...6666666666669************77777*********88888889999********9998 PP

                 STCCCSTTSBTTTBTTB--SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETTSHHHHHHSSBEEEEECCC..STEEEEEEEEE CS
     DUF1080  99 kganrstGslydeeskqvkpkakaakppgeWntyeiivkgdrvtvwlNGvlvldftdldaetekgkkgpIaLqdhg..aeveFRnikik 185
                    +r+tGs+y+++s + ++++ a +ppgeWntye++v+g+r++v lNGv+++dft++d++ +    g++++q+hg  ++v+FRni+ik
  KIR60634.1 351 ---DRTTGSIYGVKSADLAARDAALNPPGEWNTYELLVEGERLQVLLNGVKINDFTNTDPARS--LAGYVGIQNHGtgDDVSFRNIRIK 434
                 ...**********999999*****************************************754..99*********777*********8 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.93
                 GGTSCEEEEE-TTTH...STCCCSTTSBT CS
     DUF1080  84 avagyevqildseke...kganrstGsly 109
                  + g  vq++  +++   + a +s Gsl 
  KIR60634.1 505 SADGAKVQLWSCNGGgaqRWAAQSDGSLR 533
                 44555555555444433322333333333 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       4.3   1.6e+04      27      44 ..     153     173 ..     147     186 .. 0.54
   2 !  110.1   8.0   2.4e-35   8.6e-32       2     127 .]     446     567 ..     445     567 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.3
                     EEEE-TSCCGG...GEEEEET CS
  Ricin_B_lectin  27 glydChgskgk...Qlwtltk 44 
                     +++d  ++++    Q wt t+
      KIR60634.1 153 KVEDRAHAATAhlgQTWTRTD 173
                     555553333334668887663 PP

  == domain 2  score: 110.1 bits;  conditional E-value: 2.4e-35
                     EEEEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEETTSEEEETT.TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTTEEE CS
  Ricin_B_lectin   2 sgeirnvasgkCLdvegeska.gapvglydChgskgkQlwtltkdgeirskaqselCldvs..staegakvvlakChkgkgnqrWefdkdgtqir 93 
                     +g+i++   gkCLdv+++s+a g++++l++C+g++g Q+wt+ +d +irs    ++Cldv+  s+a+gakv+l++C+ g+g+qrW  ++dg+ +r
      KIR60634.1 446 TGRIVGL-AGKCLDVRNGSSAdGTQIQLFTCNGAAG-QQWTVGTDSTIRS---LGKCLDVNggSSADGAKVQLWSCN-GGGAQRWAAQSDGS-LR 533
                     6899999.9*************************99.*************...9**********************9.99************.** PP

                     ETTTSEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  94 hkksgkCLdvkgasksne.klilkkcdsgsdsQkW 127
                     +++sgkCLdv+g+s +++  +++++c +g ++QkW
      KIR60634.1 534 NTQSGKCLDVSGNSSADGaVVHQWSC-HGGTNQKW 567
                     ****************9999999999.******** PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.83     3e+03      48      74 ..     165     190 ..     144     203 .. 0.62
   2 !   50.6   1.2   6.6e-17   2.4e-13      22      89 .]     453     514 ..     443     514 .. 0.91
   3 !   30.4   0.8   1.3e-10   4.8e-07      22      58 ..     494     530 ..     487     531 .. 0.88
   4 !   38.9   0.9   3.1e-13   1.1e-09      16      54 ..     531     569 ..     530     571 .] 0.96

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.83
                      GGCEEEEECCESSEEEEEETTTT..EEEE CS
  RicinB_lectin_2  48 anqqWrledtgdgtyrivnkasg..kvLd 74 
                        q+W+    +d++y ++++a +   vL 
       KIR60634.1 165 LGQTWTR---TDEWYDFRTNARStaHVLA 190
                      4688884...3468888775554244554 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 6.6e-17
                      SSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  22 sgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                       gk+Ldv +gs a+g+++q  tc+gaa qqW++        +i++   gk+Ldv+ggs+a+G++vq+w
       KIR60634.1 453 AGKCLDVRNGSSADGTQIQLFTCNGAAGQQWTVG----TDSTIRS--LGKCLDVNGGSSADGAKVQLW 514
                      79******************************92....3568888..689*****99**********9 PP

  == domain 3  score: 30.4 bits;  conditional E-value: 1.3e-10
                      SSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCE CS
  RicinB_lectin_2  22 sgkvLdvaggstanganvqqwtcsgaanqqWrledtg 58 
                       gk+Ldv+ggs a+ga+vq w+c+g+ +q+W  +++g
       KIR60634.1 494 LGKCLDVNGGSSADGAKVQLWSCNGGGAQRWAAQSDG 530
                      39*****************************987665 PP

  == domain 4  score: 38.9 bits;  conditional E-value: 3.1e-13
                      EEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEE CS
  RicinB_lectin_2  16 tiknvasgkvLdvaggstanganvqqwtcsgaanqqWrl 54 
                      +++n +sgk+Ldv+g+s a+ga v+qw+c+g++nq+W+l
       KIR60634.1 531 SLRNTQSGKCLDVSGNSSADGAVVHQWSCHGGTNQKWTL 569
                      589**********************************97 PP

>> ET  ET module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.011        41      20      44 ..     452     476 ..     439     482 .. 0.84
   2 ?    3.2   0.1     0.031   1.1e+02      13      44 ..     486     517 ..     476     523 .. 0.81
   3 ?    1.8   0.1     0.085     3e+02      21      44 ..     537     560 ..     525     564 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.011
          ET  20 CdGeCasvsltttvngqnvtlytCd 44 
                   G+C  v+  +  +g++++l+tC 
  KIR60634.1 452 LAGKCLDVRNGSSADGTQIQLFTCN 476
                 57*******9999***********7 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.031
          ET  13 stgaevaCdGeCasvsltttvngqnvtlytCd 44 
                  t ++    G+C  v+  +  +g++v+l++C 
  KIR60634.1 486 GTDSTIRSLGKCLDVNGGSSADGAKVQLWSCN 517
                 555666667*******99*************6 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.085
          ET  21 dGeCasvsltttvngqnvtlytCd 44 
                 +G+C  vs ++  +g+ v+ ++C 
  KIR60634.1 537 SGKCLDVSGNSSADGAVVHQWSCH 560
                 5**************99**99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4018.11
//
Query:       KIR60635.1  [L=335]
Description: AP endonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-39  134.2   0.7    5.1e-39  133.9   0.7    1.1  1  AP_endonuc_2    Xylose isomerase-like TIM barrel
    4.9e-24   83.8   0.1    1.6e-23   82.2   0.1    1.9  2  AP_endonuc_2_N  AP endonuclease family 2 C terminus


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.7   5.7e-43   5.1e-39       2     202 ..      22     251 ..      21     275 .. 0.92

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 5.7e-43
                   HHHHHCT-SEEEEECCTCSHHHHC...HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHC................HTTCS....HHHHHHHHHHH CS
  AP_endonuc_2   2 aaaaeaGfdgvElfgrdlvpvsel...sdeelrelrkaldelglriaslslftrfgypded................erear....reesvdalkra 75 
                   ++a+e G+dg E+++++++  +++   +d+++++  + l++++l+++ +s +   +++ ++                 +  +    r+++ +++k++
    KIR60635.1  22 RLASEWGYDGLEIACWGDHFEVDKalaDDSYVERKLATLAKHNLKVFTISNHLVGQAVCDHpiderhqgilpariwgDG--EpegvRQRAAEEIKDT 116
                   689*************************************************************999999999996544..34599*********** PP

                   HHHHHHHTBSEEEEEBCC........GBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTCHHHHHHHHHHTTTT.EEEEEEHH CS
  AP_endonuc_2  76 ielaaaLGapllvlhpGt........agagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgdeelarlldavdspn.vgvclDtg 163
                   +++aa+LG++++v ++G+        ++  p++ +e  ++ +a+++n ++d+++++gv++a E ++++ ++++  +++r l+a++++  +g+++D++
    KIR60635.1 117 ARAAAKLGVDTVVGFTGSsiwhtlamFPPVPPEMIERGYQDFADRWNPILDVFDEVGVRFAHEVHPSEIAYDY-YTTKRTLEAIGHRPaFGLNWDPS 212
                   **************************99******************************************999.*************9********* PP

                   HHHHHTTTHHHHHHHHHGGEEEEEE.EESSTTTTSSTTE CS
  AP_endonuc_2 164 HlliaeedvddalraladrikhvHikDakgdlgagrdrh 202
                   H++++e d+  ++  +adri hv +kDak+++g+gr  +
    KIR60635.1 213 HFVWQELDPVNFIFDFADRIYHVDCKDAKVRTGDGRRGR 251
                   ******************************666665444 PP

>> AP_endonuc_2_N  AP endonuclease family 2 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.36   3.2e+03       2      16 ..      17      31 ..      16      32 .. 0.83
   2 !   82.2   0.1   1.7e-27   1.6e-23       1      56 []     276     330 ..     276     330 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.36
  AP_endonuc_2_N  2 wkdifsaLrqiGYdg 16
                    ++++ +   + GYdg
      KIR60635.1 17 FDEVCRLASEWGYDG 31
                    88888888999**98 PP

  == domain 2  score: 82.2 bits;  conditional E-value: 1.7e-27
  AP_endonuc_2_N   1 dwkdifsaLrqiGYdgplSiEwEDslmsreeGareAvaflkdkllieeseaafdwa 56 
                     +w+d f+aL++iGY gp+SiEwED++m+r+ Ga+eA++f+++ l ++ + aafd+a
      KIR60635.1 276 PWEDSFRALNAIGYSGPISIEWEDAGMDRLVGAPEALQFVRR-LAFDAPSAAFDAA 330
                     6****************************************6.***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2255.37
//
Query:       KIR60636.1  [L=394]
Description: ROK family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-47  162.1   0.0    2.4e-47  161.9   0.0    1.0  1  ROK            ROK family
    0.00011   22.1   4.1    0.00011   22.1   4.1    2.6  2  MarR_2         MarR family
     0.0026   17.5   2.2     0.0026   17.5   2.2    2.5  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain
  ------ inclusion threshold ------
      0.053   13.4   0.0       0.11   12.5   0.0    1.5  1  MarR           MarR family
      0.074   13.6   0.1       0.15   12.6   0.1    1.5  1  HTH_27         Winged helix DNA-binding domain
       0.09   12.8   4.3      0.083   13.0   1.2    2.5  2  HTH_20         Helix-turn-helix domain
       0.13   11.8   0.1       0.26   10.9   0.1    1.5  1  HTH_24         Winged helix-turn-helix DNA-binding
       0.43   10.9   1.9       0.66   10.3   1.9    1.2  1  TCR            Tesmin/TSO1-like CXC domain, cysteine-rich dom


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.9   0.0   1.1e-50   2.4e-47       2     293 ..      79     388 ..      78     389 .. 0.90

  Alignments for each domain:
  == domain 1  score: 161.9 bits;  conditional E-value: 1.1e-50
                 EEEEE-SSEEEEEEEETTS-EEEEEEE.EEHCCHHCCHHHHHHHHHHCCCHC.CHTEEEEEEEEESSEEETTCCEBSSGGC.GCCCCTTHHHHHHHHHT CS
         ROK   2 igidiGgtkialalvdeegeilarekv.etptetteetlvdaiaelvdeaer.kadeliavgigspGlisdksgkivstpn.itwenfdlvekleerln 97 
                 +gi iG  +i +a++d e  +lar++     +  +e t+  +++ l +  ++  ++ l +vg+++p+++   +g  vs+p  ++w+ +++ ++l+++l+
  KIR60636.1  79 AGITIGPREIDVAVTDGELSVLARRREpVDVRLGPEATIARTLELLGKVRANlGLGRLTGVGVALPAPVAFREGAPVSPPAlPGWHGYGVRDALAAELG 177
                 69**********************99842333445555555555554433330456788**********9999999999987899************** PP

                 S-EEEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHHCHTC...... CS
         ROK  98 vpvevenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqgClEtlasgralekraqq...... 190
                 +pv v+nD+n +al+E+  g     ++++yv +gt +G G +++g+l++G++  ag + H++  ++g+ c+CG++gClE+++s++al + a        
  KIR60636.1 178 CPVLVDNDANVMALGEQHAGTGRAFDDFLYVKLGTAIGCGLVLGGALHRGATSGAGGIAHLRQSDDGPTCACGETGCLEAYCSDEALVREALAavedgr 276
                 ******************************************************************************************9999***** PP

                 .........CGTTS-HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHC.CCTSTTHHHHHHHHHHHCCTTTTCCCT-EEEE-S-S CS
         ROK 191 .........kgekleakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGg.vseadklleairklvkkylnkklevpvveivaaklg 279
                          +  +l+++++ ++   gd+ a+ +v+  a++l++ ++ l+n+++p  +++gG  v+  + +l++ir+ v ++    +  +   iv + l 
  KIR60636.1 277 spvlaarlaEASALTVADVGRATVAGDPAAQTLVRDAARRLGRVLVGLVNFVNPGIVIIGGTaVGLGPTMLAEIRSVVYRRSPPLATGNL-PIVLSDLD 374
                 ********99999***********************************************963778888889999999888776666666.7******* PP

                 TTHHHHHHHHHHCC CS
         ROK 280 dkagllGaaaLake 293
                 d ag++Gaa La +
  KIR60636.1 375 DTAGVVGAARLASD 388
                 ***********975 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   4.1   4.7e-08   0.00011       6      61 ..      10      62 ..       8      66 .. 0.87
   2 ?    0.8   0.7       0.2   4.5e+02      10      45 ..     279     313 ..     263     318 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.7e-08
                HHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
      MarR_2  6 aqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61
                 qar+L  L++ ++   +  el ++ gls++++   ++rLva GLve+  gp++ R
  KIR60636.1 10 DQARLLRLLRDDGP--RSRVELGDAAGLSRARLVAEVDRLVALGLVETA-GPAASR 62
                599*********99..69****************************988.444544 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.2
                 HHHH.HHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHH CS
      MarR_2  10 vLaa.LgrrpgrdltvgelarrlglsksavsrilkrL 45 
                 vLaa L+ +    ltv+++ r++    +a++ +++++
  KIR60636.1 279 VLAArLAEASA--LTVADVGRATVAGDPAAQTLVRDA 313
                 44444444444..888888888888888888888776 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   2.2   1.2e-06    0.0026       7      40 ..      13      46 ..      11      48 .. 0.88
   2 ?   -1.8   0.1       1.3   2.9e+03      12      25 ..     284     297 ..     273     299 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.2e-06
  HTH_AsnC-type  7 kILeaLqedaRisyaeLAervGlSestvlrRvrr 40
                   ++L++L+ d+ +s  eL+++ GlS+++  + v+r
     KIR60636.1 13 RLLRLLRDDGPRSRVELGDAAGLSRARLVAEVDR 46
                   8************************987666555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
  HTH_AsnC-type  12 LqedaRisyaeLAe 25 
                    L e + +++a++++
     KIR60636.1 284 LAEASALTVADVGR 297
                    55555566666665 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.7e-05      0.11       4      48 ..      10      54 ..       8      55 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.7e-05
                HHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  4 tqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                 q ++Lr+l++ gp s  eL+++ g+s++ +   +drL+  Gl+e
  KIR60636.1 10 DQARLLRLLRDDGPRSRVELGDAAGLSRARLVAEVDRLVALGLVE 54
                699****************************************97 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   6.7e-05      0.15       3      62 ..       9      67 ..       7      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.7e-05
      HTH_27  3 rqqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrv 62
                + qa +L+l+r  +++ +  +l ++  ++ +  +  +++L++ GLve+ g +a+r+ +r 
  KIR60636.1  9 ADQARLLRLLR-DDGPRSRVELGDAAGLSRARLVAEVDRLVALGLVETAGPAASRGGRRS 67
                5688899****.7777777******************************99999998875 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.2   3.7e-05     0.083      12      58 ..      11      57 ..       7      59 .. 0.93
   2 ?   -1.0   0.1      0.83   1.9e+03      47      60 ..     283     296 ..     256     297 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.7e-05
                HHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEEC CS
      HTH_20 12 RrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvr 58
                ++r+lr+L+++++++  el ++ +ls++ l   ++ L+  gLve+ +
  KIR60636.1 11 QARLLRLLRDDGPRSRVELGDAAGLSRARLVAEVDRLVALGLVETAG 57
                799*****************************************976 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.83
                 HHHHCTTEEEECTE CS
      HTH_20  47 vLeeagLvevvreg 60 
                  L+ea +++v ++g
  KIR60636.1 283 RLAEASALTVADVG 296
                 46677777766666 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00012      0.26       7      48 .]      13      54 ..      11      54 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
      HTH_24  7 kILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                ++L+lL++++  s  eL ++ glS++ + + ++rL+  Gl++
  KIR60636.1 13 RLLRLLRDDGPRSRVELGDAAGLSRARLVAEVDRLVALGLVE 54
                78************************9999999999998885 PP

>> TCR  Tesmin/TSO1-like CXC domain, cysteine-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.9   0.00029      0.66       3      17 ..     246     260 ..     245     261 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00029
         TCR   3 gCnCkkskClklYCe 17 
                 +C C  ++Cl+ YC+
  KIR60636.1 246 TCACGETGCLEAYCS 260
                 6*************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2890.82
//
Query:       KIR60637.1  [L=357]
Description: Tat (twin-arginine translocation) pathway signal sequence [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.9e-29  100.3   0.0    1.3e-28   99.9   0.0    1.1  1  AP_endonuc_2  Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
       0.74    9.8   6.8        1.6    8.7   6.8    1.6  1  TAT_signal    TAT (twin-arginine translocation) pathway signa


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.0   1.4e-32   1.3e-28       3     210 .]      79     307 ..      77     307 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 1.4e-32
                   HHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCTTT CS
  AP_endonuc_2   3 aaaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllvlhpGtagagpk 99 
                   ++ae+G++ +E++g+++  +    + + +e+rk+ld++glr  + ++++ ++  ++          ++a++ ++++aa LG+ ++ +++    ++ +
    KIR60637.1  79 RLAEIGYKEIEFAGYNQSTAILGRQITPAEIRKILDDNGLRANGTHASIPSTLTPT-----T----LAAFEAQLDIAATLGMSHIGTGS----DPTN 162
                   689******************99******************888888888888776.....7....**********************5....5*** PP

                   SGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC................HHHHHHHHHHTTTTEEEEEEHHHHHHH............ CS
  AP_endonuc_2 100 gseeeawerlaeslneladyaekegvklalEtlagsgvelgd................eelarlldavdspnvgvclDtgHllia............ 168
                   ++++++w+ +ae++n l+++a+ +g kl+ ++++ ++++l+d                ++l++++ ++++++v + +D+++++ a            
    KIR60637.1 163 SNYKADWDAAAERWNILGEMAASRGLKLYTHNHDAAYNFLLDsgplddlgrptrssgiRKLEYFFAQTNPEWVFFEMDIYWAHVAqhrwhtytdpdg 259
                   ************************************************************************************************* PP

                   .....TTTHHHHHHHHHGGEEEEEE.EESS.TTTTSSTTEESTTSSSS CS
  AP_endonuc_2 169 .....eedvddalraladrikhvHikDakg.dlgagrdrhvpigeGei 210
                         +d+ ++++a   r  ++H+kD+k+ ++  ++ +++p+g+G+i
    KIR60637.1 260 vartdIFDPLATVQARTMRFPLFHAKDGKRnPNVTNGYEFAPLGQGDI 307
                   **99999999999999999***********99999***********97 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   6.8   0.00018       1.6       2      24 ..       8      30 ..       7      31 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00018
  TAT_signal  2 lSRRdFLKgsAAaaAAaalggca 24
                +SRR  L + A++a Aaa gg++
  KIR60637.1  8 MSRRRMLGAVAGVAGAAAIGGAT 30
                9*******999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2633.61
//
Query:       KIR60638.1  [L=142]
Description: hypothetical protein TK50_22285 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 952.05
//
Query:       KIR60639.1  [L=704]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.6e-123  409.5  29.0    1.9e-69  234.1   9.1    2.1  2  MMPL      MMPL family


Domain annotation for each model (and alignments):
>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.1   9.1   1.1e-73   1.9e-69       2     331 ..      45     364 ..      44     366 .. 0.91
   2 !  181.4  11.9   1.2e-57   2.2e-53      19     322 ..     398     692 ..     382     703 .. 0.85

  Alignments for each domain:
  == domain 1  score: 234.1 bits;  conditional E-value: 1.1e-73
        MMPL   2 lspadaesvkamdrleaafpeeadsdkiivvvlaegdealgsaaaeaavdelvdelkkdtkhvgevsdflsdpdvaaafvSkDgkaaralvtlegdpgs 100
                 ++pa ae+++a d l+a+f + ++++++ vv+   ++  +++ a+++ + + ++++ + +++v  + ++         + S+Dg+a++++v ++ +++ 
  KIR60639.1  45 FLPAEAEATRAQD-LTAEFAD-RQTTPALVVYA--RATGITD-ADRQRAAADAARFAQVPGVVTPIPPP---------VPSQDGQALQVVVPID-EAEG 128
                 78999******99.88*****.99999999988..5555555.55666666667777779999999999.........****************.7777 PP

        MMPL 101 teadesvaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglel 199
                 +   + ++++ra++ + r  +gl+v v+Gpa +ladl +++   ++ + +vtl v+lviLl+vyrS+v ++ pll +++s+++a  +v++la++++++l
  KIR60639.1 129 ERIGQVIDELRAIAGDDR--DGLTVDVAGPAGLLADLIEVFGAIDGPLLLVTLSVVLVILLVVYRSPVLWIFPLLAAGTSYALAAVFVYLLADHDVVKL 225
                 77779***********99..******************************************************************************* PP

        MMPL 200 stfvlgllvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTllPAl 298
                 + +++g+l+vl++++GtDYallL++Ryreel+++ +  +a+  a ++++++++a+G tv++++l+L++++l++ +++G+ +a+G++ ++l++lT+lPAl
  KIR60639.1 226 NGQAQGILTVLVFGAGTDYALLLIARYREELHRHGRPWDAMRAAWRGAAPAIIASGGTVILSLLCLLLSSLNSNRALGPIAAIGIAATLLVMLTFLPAL 324
                 *************************************************************************************************** PP

        MMPL 299 lvllGraa.la......kprrkrkkrwWrrlgrlvvrrPl 331
                 lvl Gr+a ++      +++ ++++ +W r++ +v+rr +
  KIR60639.1 325 LVLGGRWAfWPrrpavdQADPQTEHGLWSRIAGFVARRAR 364
                 *******776665555444444555************975 PP

  == domain 2  score: 181.4 bits;  conditional E-value: 1.2e-57
        MMPL  19 afpeeadsdkiivvvlaegdealgsaaaeaavdelvdelkkdtkhvgevsdf.....lsdpdvaaafvSkDgkaaralvtlegdpgsteadesvaaira 112
                 +  ++a+ d i+  + a +++ ++   +++a  ++v+e+ ++ ++v++vs++      + pd +a     Dg+   +  tl+  p+s+ a+++++++r+
  KIR60639.1 398 RTDSVAGQDVIAAHYPAGTGSPATI-FTNQASAQQVAEVAQRVPGVAAVSPVtqgsqAGPPDPNAPPKVVDGRV-EFEATLADPPDSNGAERTIRDLRE 494
                 5555444445555555555555555.566667778888889999999999994444434555777777789997.99999999999999********** PP

        MMPL 113 aveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalgl.vlilalllglelstfvlgl.lvv 209
                 av+  +   g +  v+G +a++ d++das+rd+ +i+ v l+vi+viL++++r+l+a+ll+++tvv+s+la+lgl +li+++ll +   +++++l ++v
  KIR60639.1 495 AVHGVP---GSDTVVGGFTAINVDTSDASARDRNVIIPVVLLVIAVILALLLRALLAPLLLIATVVLSFLATLGLcALIFRHLLDFPGVDQSFPLfAFV 590
                 ******...****************************************************************************99888888877*** PP

        MMPL 210 lliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTll.PAllvllGraal 307
                 +l+a G+DY+++L+sR ree+ +  +r  +v   +a tg+v+t aG+++a+++ +L+v+ l vl ++Gva+a+Gvl+d+ +v++ll PAl   +G +  
  KIR60639.1 591 FLVALGIDYNIFLMSRVREESVHRGTR-PGVLAGLAVTGGVITSAGIVLAATFSALAVLPLVVLVELGVAVAVGVLLDTIVVRSLLvPALSYDIGAR-- 686
                 ********************9876666.5********************************************************************.. PP

        MMPL 308 akprrkrkkrwWrrl 322
                           wW+ +
  KIR60639.1 687 ---------IWWPGR 692
                 .........666433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 4620.57
//
Query:       KIR60640.1  [L=413]
Description: amine oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-37  128.6   0.4    4.9e-37  128.3   0.4    1.1  1  Amino_oxidase  Flavin containing amine oxidoreductase
    9.4e-16   57.8   0.8    2.5e-15   56.5   0.8    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    3.2e-06   26.5   1.9    5.2e-06   25.8   1.9    1.3  1  FAD_binding_2  FAD binding domain
    3.7e-06   26.6   2.9      5e-06   26.1   2.9    1.1  1  FAD_oxidored   FAD dependent oxidoreductase
    6.7e-06   25.6   0.6    1.1e-05   24.8   0.6    1.3  1  FAD_binding_3  FAD binding domain
    3.2e-05   23.3   0.2    5.9e-05   22.4   0.2    1.4  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00016   20.9   0.8    0.00028   20.1   0.4    1.6  2  Lycopene_cycl  Lycopene cyclase protein
    0.00016   20.9   0.1    0.00023   20.4   0.1    1.2  1  GIDA           Glucose inhibited division protein A
    0.00022   20.9   9.0     0.0013   18.4   9.0    2.1  1  DAO            FAD dependent oxidoreductase
    0.00097   17.9   0.1     0.0016   17.2   0.1    1.3  1  HI0933_like    HI0933-like protein
     0.0014   19.2   0.2     0.0024   18.4   0.2    1.3  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0018   17.5   0.1     0.0034   16.7   0.1    1.3  1  Thi4           Thi4 family
  ------ inclusion threshold ------
      0.051   12.8   0.3      0.092   12.0   0.3    1.4  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
       0.13   11.5   0.1       0.22   10.8   0.1    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.3   0.4   3.8e-40   4.9e-37       1     452 []      14     406 ..      14     406 .. 0.83

  Alignments for each domain:
  == domain 1  score: 128.3 bits;  conditional E-value: 3.8e-40
                    HHHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEETTEEEESS--EEETTTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTEECCTTEECHH..H CS
  Amino_oxidase   1 laGLaaArqLlsaGfdVtvlEardrvGGRirtvrsdGylielGamwftgagnpllellkelgledslslpdpgapkrvlskggrefpgdlspv..p 94 
                    laGLaaAr+L++aG++  +lEa dr+GGR++t+  dGyli+ G+++++ a++ l +ll+   l++  ++p       vl ++g+ +  +++p+  p
     KIR60640.1  14 LAGLAAARRLHRAGVSWRLLEAGDRLGGRVATDTIDGYLIDRGFQVLNTAYPRLGTLLDLATLDLGWFTPG------VLVRRGEAVARLVNPLreP 103
                    79**********************************************************99998877443......4455555554444444235 PP

                    HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTSTTTTCBHHHHTC CS
  Amino_oxidase  95 aewealleqgalsaellsleeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagdpselsaklalp 190
                    a+ ++ +      a+  sl ++lr++  a  ++tl   +l +    +++ +l r +++d ++ + l++p       f+sg++    ++l+ +++  
     KIR60640.1 104 AGAAGTAL-----ADVGSLRDRLRFAALATGCATLPPGRLLDAPETTAEGALRRAGLSD-AIIEELLRP-------FLSGVLVD--RALETSSHVL 184
                    55444444.....4888999******99999****************************.99*******.......*****987..8899999999 PP

                    CCCHHHHHTSCCCEETTHTHHHHHHHHHTTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S-HHHHHSSEEESCCSHHHHHHHHHSE CS
  Amino_oxidase 191 llwelegfggslllprgGlsqlpealaeelrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvplgvlkailfsPplpdekaeairnlg 286
                    +   ++  +g + +p  G+++lp+a+a+ l+ + + l+t+V e+       +v+++ ge  +++aV+v+v+++++               a+ ++ 
     KIR60640.1 185 AMVLRSFARGRVGVPAQGMGALPRAIAAPLPADLVELRTPVAEVGP----HRVRTQPGEL-RCRAVLVAVDPPTAG----------TLLPALGRVR 265
                    999999999999999*************99999*************....9999988886.***************..........5589****** PP

                    EEEEEEEEEEESSGGSGCSTSECECECCCEEETTTEEEEECCECCCSTTTEEEEEEEEECHHHHHHHTTS-HHHHHHHHHHHHHHHHTGTSSTCSE CS
  Amino_oxidase 287 fgsvnkvilefdrkfwednalgqgvlvseltttlgeafissdfpsrappgkglvllvyvggdaaneleslsdeelvqavlrdLrklfgeevpepka 382
                    +   +  + ++d+++ ++ +l   v+ ++   ++ + ++s   p +ap g++lv ++ vg         +++e +v   + +L++l+g   p    
     KIR60640.1 266 MHAYTTYYHATDTPPLDEPILL--VDGDRRELVANTVVLSRAAPTYAPAGRHLVATSVVG-PS------APPEPVV---RAELARLYG--RPTADW 347
                    ***************7775551..456677777777777777***********7777777.33......3777765...5688999**..333333 PP

                    EEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHHHHHH CS
  Amino_oxidase 383 tlvtrWhtdplargsysyvsvgpghedydplakpegdprlffAGehtsreypgtvegAilSGlraAaril 452
                    ++ t            +++++ p + +++++ +    ++lf+AG+h       +++gA+ SG+raA ++l
     KIR60640.1 348 AHLTTV------DVPAALPAAPPPQGRLRKPVAL--GGGLFVAGDHRD---SPSIQGALASGWRAAGAVL 406
                    333333......3334466777777777777777..7*********88...555*************997 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.8   1.9e-18   2.5e-15       1      65 [.       9      71 ..       9      73 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 1.9e-18
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEECTS---EEETTHHHHCHHHH CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpgvrvdygahifhgsgyypnvrrll 65
                   IvG+Gl+Gl+aA++L++ag++  lle++drlGGr+a+ +++g+ +d g +++++   yp++ +ll
     KIR60640.1  9 IVGGGLAGLAAARRLHRAGVSWRLLEAGDRLGGRVATDTIDGYLIDRGFQVLNT--AYPRLGTLL 71
                   9*****************************************************..599998876 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   1.9     4e-09   5.2e-06       1      37 [.       6      42 ..       6      50 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 4e-09
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37
                   Dv+++G+GlAGLaAA ++++aG +  ++e +++ gg 
     KIR60640.1  6 DVVIVGGGLAGLAAARRLHRAGVSWRLLEAGDRLGGR 42
                   9*******************************99985 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   2.9   3.9e-09     5e-06       1      39 [.       6      44 ..       6      56 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3.9e-09
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGllt 39
                  Dvv+vGGg+aG+aAA    raG +  L+e  ++lGG ++
    KIR60640.1  6 DVVIVGGGLAGLAAARRLHRAGVSWRLLEAGDRLGGRVA 44
                  9***********************************875 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.6     9e-09   1.1e-05       3      32 ..       6      35 ..       4      41 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 9e-09
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   dV+IVG+G+aGl +a+ L++aGv+ +l+e 
     KIR60640.1  6 DVVIVGGGLAGLAAARRLHRAGVSWRLLEA 35
                   8**************************996 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.2   4.6e-08   5.9e-05       2      37 ..       6      40 ..       5      59 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 4.6e-08
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtcln 37
                 dvv++GgG AGlaaa++l +ag+   l+e  g  l+
   KIR60640.1  6 DVVIVGGGLAGLAAARRLHRAGVSWRLLE-AGDRLG 40
                 8**********************999995.444444 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.4   2.2e-07   0.00028       1      36 [.       6      39 ..       6      46 .. 0.94
   2 ?   -3.5   0.0       3.2   4.1e+03     122     150 ..     286     315 ..     274     319 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.2e-07
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   Dvv++G+G+Agl+ A rl   ++g++  l+ea++ l
     KIR60640.1  6 DVVIVGGGLAGLAAARRL--HRAGVSWRLLEAGDRL 39
                   9*****************..*************986 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.2
  Lycopene_cycl 122 vvleggr.kirarlvvdarglaslkkarrl 150
                      ++g+r ++ a +vv +r ++   +a r+
     KIR60640.1 286 LLVDGDRrELVANTVVLSRAAPTYAPAGRH 315
                    556777779999999999998887766555 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.8e-07   0.00023       1      46 [.       6      50 ..       6      75 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.8e-07
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEE- CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithkldtiaelsCnpsigg 46
                dv+++GgG+AG++AA  + r+G++  L+ +  d+++  +  ++i g
  KIR60640.1  6 DVVIVGGGLAGLAAARRLHRAGVSWRLL-EAGDRLGGRVATDTIDG 50
                79*************************9.88888888887777766 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   9.0     1e-06    0.0013       1     269 [.       6     321 ..       6     402 .. 0.54

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1e-06
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeele 97 
                 dvvi+GGG +Gl++A+ L r+g    lle+gd++g      ++  + ++l +       +++   a+ +l  l +   +d+++  +G+l+  ++e+  +
  KIR60640.1   6 DVVIVGGGLAGLAAARRLHRAGvsWRLLEAGDRLG---GRVATDTIDGYLIDRG-----FQVLNTAYPRLGTLLDLATLDLGWFTPGVLVR-RGEA-VA 94 
                 9*****************999*999**********...4455555555442222.....36677777777777766677888888888887.4432.33 PP

                 HHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEES.............................. CS
         DAO  98 aldkllallleagldaelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveileg.............................. 166
                 +l + l+  ++ag+    l     +++ +  ++l+ a + ++++++ p +l+ a   +ae  G+  + g                              
  KIR60640.1  95 RLVNPLR--EPAGAAGTAL-----ADVGSLRDRLRFAALATGCATLPPGRLLDAPETTAE--GALRRAGlsdaiieellrpflsgvlvdraletsshvl 184
                 3332222..2233322211.....111111123333334444444444444444222222..1111111222222223334444444444444444444 PP

                 ......................................ECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHH..HHHTTCTTTSEEEEEEEEEE CS
         DAO 167 ......................................tevtgleeedgkvwgverttpgendaadavVnaaGawsd..llgllkeldlpispvrgqvl 225
                                                       t+v ++     + ++v rt pge + ++av +a  + +   ll   + l      vr + +
  KIR60640.1 185 amvlrsfargrvgvpaqgmgalpraiaaplpadlvelrTPVAEV-----GPHRV-RTQPGELR-CRAVLVAVDPPTAgtLL---PAL----GRVRMHAY 269
                 44444444444444445688888888888886666666666666.....34566.44447665.59999999999865444...444....33333333 PP

                 EEEECCTHSTGSGCSEEEEEEEETTTTEEEEEE...........TTSEEEEEESS CS
         DAO 226 vlkplseklvspaailpvpetdddgrgvyvtpr...........kdgrvlvGgta 269
                 ++   +  ++ p +  p++  +d++r   v  +           + gr+lv ++ 
  KIR60640.1 270 TT-YYHA-TDTPPLDEPIL-LVDGDRRELVANTvvlsraaptyaPAGRHLVATSV 321
                 33.2111.11111222222.22222221111112222233334434666666654 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.3e-06    0.0016       2      39 ..       6      43 ..       5      46 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.3e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHH CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKi 39
                 dv+++GgG AGl aA +++++g +  lle++++lg ++
   KIR60640.1  6 DVVIVGGGLAGLAAARRLHRAGVSWRLLEAGDRLGGRV 43
                 8********************************99776 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   1.8e-06    0.0024       2      46 ..       7      52 ..       6      63 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.8e-06
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHH CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskil 46
                vv+vGgG+ gl +A  l++ g +  ++e++d+l  r+  +++  +l
  KIR60640.1  7 VVIVGGGLAGLAAARRLHRAGVSWRLLEAGDRLGgRVATDTIDGYL 52
                8*********************************666555554444 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   2.7e-06    0.0034      16      55 ..       3      41 ..       2      46 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.7e-06
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailersvspGG 55
                ae DvvivG+G +GL+aa+ l ++ ++   +le+   +GG
  KIR60640.1  3 AEPDVVIVGGGLAGLAAARRLHRA-GVSWRLLEAGDRLGG 41
                689*******************99.999999998766666 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   7.2e-05     0.092       1      30 [.       8      36 ..       8      44 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.2e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 +I+G+G aGlaaa  l +ag+ ++  lE g
   KIR60640.1  8 VIVGGGLAGLAAARRLHRAGV-SWRLLEAG 36
                 7********************.79999998 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00017      0.22      30      53 ..       6      29 ..       2      40 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
                 EEEEESTSHHHHHHHHHHHHTT-E CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgak 53
                  v+++GgG aGl+A++  ++ g +
   KIR60640.1  6 DVVIVGGGLAGLAAARRLHRAGVS 29
                 69*************998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3043.57
//
Query:       KIR60641.1  [L=136]
Description: ribonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-10   41.0   0.7    2.9e-10   40.7   0.7    1.1  1  PIN       PIN domain


Domain annotation for each model (and alignments):
>> PIN  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.7   1.6e-14   2.9e-10       1     120 [.       2     123 ..       2     125 .. 0.85

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.6e-14
                 EEE-HHHHHHHHTTSHHHHHHHHHHHTS..SEEEEEHHHHHHHHHHHHSSCHCHHHHHHHHHHHHHHHTSEEEEBCHHHHHHHHHHHHHHHSBHHHHHH CS
         PIN   1 ivlDTsvliallrgeekaeaarklleel..eelvtsalvlaEllyvlarrkskrekaaelvelllllsalkilpidaeiaeeaaeialkygllpnDali 97 
                 i+lD+ ++++l+r e  ++ ++ +l++     lv+salv  E+ + l+r  s  ++++ + ++  +l +l+i   d+ i+++aa++ +   l+++Da++
  KIR60641.1   2 IYLDSAAVVKLVRQEACSADLVSWLNAHddVPLVSSALVEVEVPRALRR--SAPQALIGVPAAVGRLFRLEI---DSTIRATAAAFNEPT-LRSLDAIH 94 
                 79************************9999*******************..888888888888888777777...669999999999998.******** PP

                 HHHH....HHHT-E......EE.ESSTHHHHHH CS
         PIN  98 aAtA....kehgik......liatfDedfrrva 120
                 +AtA         +      +++t+D+++ + a
  KIR60641.1  95 LATAqlltN----EsgtaliAFVTYDRRLLECA 123
                 ****65553....224446677799*9987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1107.81
//
Query:       KIR60642.1  [L=92]
Description: prevent-host-death protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-10   39.0   0.0    7.1e-10   38.6   0.0    1.2  1  PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin 


Domain annotation for each model (and alignments):
>> PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0     4e-14   7.1e-10       1      50 [.       1      49 [.       1      58 [. 0.86

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 4e-14
                     CEEEEHHHHHHTHHHHHHHHHHHT-EEEEEETTEEEEEEEEHHHHHHHHH CS
  PhdYeFM_antitox  1 mkivsiseakanlselldeveegeepviItrrGkpvaVlvsleeyerlqe 50
                     m+ ++++e+ +n s++l +v  ge+ v It+rG+p a+lv++   +++++
       KIR60642.1  1 MERIGVRELNQNTSQVLARVSGGET-VEITDRGHPIARLVPVGNDRSMLA 49
                     8889********************9.***************954444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 608.20
//
Query:       KIR60643.1  [L=365]
Description: hypothetical protein TK50_22330 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2506.55
//
Query:       KIR60644.1  [L=358]
Description: iron ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-66  224.0  42.3    2.8e-66  223.7  42.3    1.1  1  FecCD     FecCD transport family


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.7  42.3   1.6e-70   2.8e-66       3     311 ..      44     347 ..      39     348 .. 0.97

  Alignments for each domain:
  == domain 1  score: 223.7 bits;  conditional E-value: 1.6e-70
       FecCD   3 llllllslllgavkispsevfeallgkadsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllgslslf 101
                 + l ++ l lg++++ + ev+ +l g+   l +++vle+rlprv+aa++ GaaL+vaGa++Qt+trNpLa+P+i+G+ +g+  g+++alll+  + +++
  KIR60644.1  44 ATLAVVGLWLGDFPLRVDEVLGVLGGRIGGLTRTVVLEWRLPRVAAAVAFGAALGVAGAIFQTITRNPLASPDIIGLANGSFSGMLVALLLM--GGGWH 140
                 45678889**********************************************************************************96..89999 PP

       FecCD 102 alplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllllllarkl 200
                  l+l ++lg+lla+l ++lla  r g s +++i++G+ vs++l+a +++lll ++ e++  +  w +Gsl++a+ + v+ ++ ++l+ll+++ l a  l
  KIR60644.1 141 LLMLGSLLGGLLAALAIYLLA-YRDGLSGFRFIVVGVGVSSMLAATNTWLLLRADLETALFAAAWGAGSLNTATAEVVWPAAGVVLALLAVTPLWAAAL 238
                 9********************.***************************************************************************** PP

       FecCD 201 dllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptelpvgivta 299
                   lalgde+A++ Gv v r r +l+l++++l++++++++Gpi+Fv+L++P+ia++lv       l ++a +Ga+lll adl+a+ ++ p ++pvg+vt 
  KIR60644.1 239 AQLALGDEVAAASGVAVDRSRAILVLIAVALVSAVTTVAGPISFVALAAPQIAHRLVR-APGLPLAATAGVGAVLLLGADLVAQHVI-PLTVPVGVVTV 335
                 *********************************************************9.889999*********************9.8999******* PP

       FecCD 300 liGapffiylll 311
                 ++G+ ++++ll+
  KIR60644.1 336 TLGGGYLLWLLV 347
                 **********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2500.22
//
Query:       KIR60645.1  [L=312]
Description: iron ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-21   76.8   0.1    2.2e-21   76.5   0.1    1.1  1  Peripla_BP_2   Periplasmic binding protein
  ------ inclusion threshold ------
      0.032   14.7   0.1      0.079   13.5   0.1    1.6  1  Ribosomal_L11  Ribosomal protein L11, RNA binding domain


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.1   2.5e-25   2.2e-21       1     217 [.      62     273 ..      62     278 .. 0.92

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 2.5e-25
                   EEE-SHHHHHHHHHTT-GGGEEEB-GGG--GGGGGGT...TS-BSBESSSB-HHHHHHH--SEEEE-GGG...GGGHHHHHHHS-EEE----TTSHH CS
  Peripla_BP_2   1 iaslspsvteillalGatdkvvgvdtttsdpldadklee.aivevgadgeidvEklaalkPDlvilskglgltdedeellksgiptvivessntges 96 
                   +++l+p + ++ +al +t+  ++v   + ++ ++ ++++  i++vg+ +e++v k+aalkPDl+i+ ++   +++ +++l + +ptv++ s+   + 
    KIR60645.1  62 VVVLEPVQLDTAIALEITPVGAAVLSEAAGVPKYLGDKAaGITTVGTVQEPNVQKIAALKPDLIIGTESR--HSALYDQLTAVAPTVFMASQA--DP 154
                   7999999999999998888777766666666666555556******************************..********************9..** PP

                   HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT.-EEEEEEEETTE..EEEE-TTSTTTHHHHTS--EESTTT--STT-EEE-HHHHHHH- CS
  Peripla_BP_2  97 lkeqiralgellgledeaeklvaeidsklaaaksaidsekpkpvlvfggadeggyvvagsnsyigdlldalgieniaaeskkseyeeisaEqilasd 193
                   ++++++ +++ lg  + a+kl + ++++ a++  +  ++   +++ ++   +g  ++ g  s+ g  l+ +g++    +  +s + +is+E++l+++
    KIR60645.1 155 WQDNVKFTATTLGGAESADKLLTGYQQRCAEIAGKFGTA--GKTAQLIRPRDGVLTLYGPTSFAGSTLECVGFKTPQRDWENSISVDISPERVLEAK 249
                   ***************************************..99999999***************************88877**************** PP

                   -SEEEEEEHHHHT-S--HHHHT-S CS
  Peripla_BP_2 194 pdvifvsgraeadnktgleflken 217
                   +d +fv++ + +d++t+++ + +n
    KIR60645.1 250 ADHVFVTTVDVNDRSTIPASVDAN 273
                   *********999999999888777 PP

>> Ribosomal_L11  Ribosomal protein L11, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   8.9e-06     0.079       2      43 ..      79     122 ..      78     131 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.9e-06
                    --SHHHHHHHHHTXSS..XXSSTTTSXXEEEEHHHHHHHHHHHG CS
  Ribosomal_L11   2 tPptsylLkkaagiek..gsgkpgketvGtvslkqvyeIAkiKk 43 
                    tP  ++ L +aag++k  g++  g +tvGtv+   v +IA  K 
     KIR60645.1  79 TPVGAAVLSEAAGVPKylGDKAAGITTVGTVQEPNVQKIAALKP 122
                    7888999********9889999999***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2340.41
//
Query:       KIR60646.1  [L=283]
Description: hypothetical protein TK50_22355 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-31  109.5   0.0      2e-31  108.7   0.0    1.4  1  FAD_binding_9  Siderophore-interacting FAD-binding domain
    4.8e-20   72.3   0.6    8.6e-20   71.4   0.6    1.4  1  SIP            Siderophore-interacting protein


Domain annotation for each model (and alignments):
>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   0.0   2.3e-35     2e-31       2     120 ..      16     135 ..      15     136 .. 0.94

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 2.3e-35
  FAD_binding_9   2 vvrverlspslrrvtltgeelagfksdgtDqhikLllpepgqtepelppelteegl.qeweelpederpvmRtYtvraldaeaeeldidfvlHgde 96 
                    v++++rlsp ++rvtl+ e l++++ ++ Dq+ik++lp +g     l   l e+g+ +ew++ p+ erp++R+Yt  + +++a+eld+df+lH+ +
     KIR60646.1  16 VTATRRLSPGFVRVTLGDERLRELAPHQLDQRIKIMLPVTGDYPAGLRAGLPEHGWrREWRSTPDRERPLLRSYTAYRTRPAAGELDLDFYLHQPH 111
                    899****************************************9999888877655168************************************* PP

  FAD_binding_9  97 gpaarwAaqAqpGdelaivgPgga 120
                    gpa+ wAa A+pGd+l + gP+++
     KIR60646.1 112 GPASGWAAGARPGDRLMLSGPHVR 135
                    *********************975 PP

>> SIP  Siderophore-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.6   9.6e-24   8.6e-20       2     118 ..     151     274 ..     150     275 .. 0.89

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 9.6e-24
         SIP   2 dwvllagDeTAlPAiaaiLeelpadaqvravievpdaadelelsa.paaveltwlvregaaaagelLaealrelelpag........elyvwvagEaav 91 
                 ++vl+a+DeTA+PA+++iL +l +++++++++e   aad  +l+   a+  ++   r+ga + g+ L++ + ++ +++g        ++y+w+a E++ 
  KIR60646.1 151 TRVLIAADETAYPAVRGILPSLGPGVRATVLLEAGVAADAATLDDvTAGHSVQVGLRSGA-RGGTVLTTMVGDWLVEHGaaaagagtDFYAWAATESSR 248
                 789****************************************98688889999999999.99999999999999974444555667************ PP

         SIP  92 vkalRrhlvkergldrkqvaamgYWrr 118
                 + +lRr++  e  +d ++v+++gYW+ 
  KIR60646.1 249 IANLRRLFA-EARIDPDRVHTQGYWHD 274
                 ******996.778************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2021.23
//
Query:       KIR60647.1  [L=296]
Description: 3-beta hydroxysteroid dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-12   45.0   1.7    5.9e-11   42.3   1.7    2.0  1  Epimerase        NAD dependent epimerase/dehydratase family
    2.4e-10   40.6   5.0    4.8e-10   39.6   5.0    1.6  1  NAD_binding_10   NAD(P)H-binding
    3.8e-07   29.9   3.8    5.5e-07   29.4   3.8    1.2  1  NmrA             NmrA-like family
    7.2e-06   25.3   0.2    1.1e-05   24.7   0.2    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
    1.2e-05   24.9   0.0    1.6e-05   24.5   0.0    1.2  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    2.4e-05   23.5   0.1    3.3e-05   23.0   0.1    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    3.3e-05   23.2   0.0      5e-05   22.6   0.0    1.3  1  NAD_binding_4    Male sterility protein
     0.0041   16.6   0.8     0.0062   16.0   0.8    1.3  1  adh_short        short chain dehydrogenase
  ------ inclusion threshold ------
      0.046   13.9   0.2      0.089   13.0   0.1    1.6  2  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
      0.052   13.8   0.5       0.11   12.8   0.5    1.6  1  TrkA_N           TrkA-N domain
      0.059   13.5   0.7       0.13   12.4   0.7    1.6  1  DapB_N           Dihydrodipicolinate reductase, N-terminus
      0.078   12.9   2.5       0.28   11.1   2.5    1.8  1  KR               KR domain
       0.14   12.8   0.4       0.25   12.0   0.4    1.4  1  Methyltransf_11  Methyltransferase domain
       0.17   11.5   0.3       0.32   10.6   0.3    1.4  1  ApbA             Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   1.7   4.6e-14   5.9e-11       1     116 [.       3     112 ..       3     217 .. 0.79

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 4.6e-14
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnll 99 
                 ++VtGatGf+G+a+v+ ll++g++v+gl+r  s+ +  + + +e +++ l d + l+++ +  ++d v+h A v      ++d a+ ++++l+ +  l 
  KIR60647.1   3 VFVTGATGFVGAAVVRDLLDAGHQVVGLARSDSSAAALAAAGAEAHRGSLEDLAGLRAAAS--AADGVVHTAFVH----DFTDFAAAVRTDLRAVEALG 95 
                 68*****************************999999999999****************99..9*******7643....35555666777777777777 PP

                 HHHHHHTCTEEEEEEEG CS
   Epimerase 100 eaarkagvkrllflsSs 116
                 ea+  +g   ++  +++
  KIR60647.1  96 EALVGSGRPLVVTSGTT 112
                 77777776555555555 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   5.0   3.8e-13   4.8e-10       1      82 [.       7      95 ..       7     135 .. 0.78

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 3.8e-13
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-.........--TCCHHHHHHHHH CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsal.........ggggkdeegakniv 82
                    GAtG vG ++v+ ll++ gh+v+ l+R+ +++a+l+ ++g+e+  g+++d + l++a + ad Vv ++         ++ ++d ++++++ 
      KIR60647.1  7 GATGFVGAAVVRDLLDA-GHQVVGLARSDSSAAALA-AAGAEAHRGSLEDLAGLRAAASAADGVVHTAfvhdftdfaAAVRTDLRAVEALG 95
                    9****************.5**************997.7************************99988844444333322222333344444 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   3.8   4.3e-10   5.5e-07       1      73 [.       3      73 ..       3     100 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 4.3e-10
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE--- CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtg 73
                + v+GaTG  G++vvr ll+agh+v  l R  +s  a++l++aG+e   g+l+d + l++a + +d+v  +  
  KIR60647.1  3 VFVTGATGFVGAAVVRDLLDAGHQVVGLARSDSS--AAALAAAGAEAHRGSLEDLAGLRAAASAADGVVHTAF 73
                579***************************8766..667***************************9986654 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.2   8.4e-09   1.1e-05       1     238 [.       1     244 [.       1     252 [. 0.81

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 8.4e-09
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...............T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre...............eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaea 81 
                    m++ vtGa+G +G ++++ l  +g++v++l r+               +  l+d + ++++ ++   d vv++A+ ++     ++ +aa + + +a
     KIR60647.1   1 MRVFVTGATGFVGAAVVRDLLDAGHQVVGLARSdssaaalaaagaeahRGSLEDLAGLRAAASA--ADGVVHTAFVHDF----TDFAAAVRTDLRA 90 
                    89****************************9999999999999997777777888888877777..677******9998....4678999999*** PP

                    HHHHHHHHHHCT-EEEEEE.EGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHHH-SSEEEEEE-.SEESS.SSS-HHHHHHHHHHH-SEEE CS
  RmlD_sub_bind  82 vealAeaaaavgalLihvS.tDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavlaagkkalivRts.wvyge.kgknfvktmlrlakereelk 174
                    veal ea    g +L+  S t    +G+ +   +edd+ +P   +Gr+  a     +  g +a+++R +  v g+   + f+ +++  a++r    
     KIR60647.1  91 VEALGEALVGSGRPLVVTSgTTLLTPGRVS---TEDDAAGPDFPRGRAEEAT-LGLAGRGVRAVVLRLPpSVHGAgDTRGFLPRLVGIARDRGFSA 182
                    ****************99945555566644...69***********975433.333448889999*995379987577899999999999999999 PP

                    EESS-EE--EEHHHH.HHHHHHHHHHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHCHTTSEE CS
  RmlD_sub_bind 175 vvaDqlgsPTsardl.AevllqllekaaeekelagvyHlanegetswlefArailkeagadseev 238
                     vaD   +  ++++l A+ l+ l+ + a    + + +H ++++++   ++A++i +++++  + +
     KIR60647.1 183 YVADGATRWAAVHRLdAARLFRLALEGAP---AGSRLHGVADEAVPFRAIAEVIGRQLDVPVTSI 244
                    99999999888888855566666655554...677899999999999999999988888766555 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.2e-08   1.6e-05       1      36 [.       4      39 ..       4      72 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.2e-08
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TT CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfnt 36
                   ++TG +Gf+G+ +++ Ll+ g++v+g+ r +ss ++
     KIR60647.1  4 FVTGATGFVGAAVVRDLLDAGHQVVGLARSDSSAAA 39
                   59***************************9998653 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   2.6e-08   3.3e-05       2      81 ..       5      79 ..       4      96 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.6e-08
   3Beta_HSD  2 vtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvag 81
                vtG++GF+G+a+v+ L+++++    +v+ l+ s++    l   + +  + g + d + l++a   +d v+h+a + d + 
  KIR60647.1  5 VTGATGFVGAAVVRDLLDAGH----QVVGLARSDSSAAALAAAGAE-AHRGSLEDLAGLRAAASAADGVVHTAFVHDFTD 79
                9*******************7....788888888887778887777.*************************99988765 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.9e-08     5e-05       1      49 [.       5      51 ..       5      67 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.9e-08
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS- CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekke 49
                   +TGaTGF+G+ ++++LL+     +++ l+R++s+++a++   +e  + +
     KIR60647.1  5 VTGATGFVGAAVVRDLLDAGH--QVVGLARSDSSAAALAAAGAEAHRGS 51
                   7******************98..9**********999887666665555 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.8   4.9e-06    0.0062       3      46 ..       3      46 ..       1      75 [. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.9e-06
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelke 46
                v+vtGa++ +G a+++ l+ +G +vv ++rs++ ++++a+   e
  KIR60647.1  3 VFVTGATGFVGAAVVRDLLDAGHQVVGLARSDSSAAALAAAGAE 46
                89*****************************9999887776444 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     7e-05     0.089       8      48 ..      10      50 ..       3     112 .. 0.80
   2 ?   -3.0   0.0       5.8   7.5e+03     110     124 ..     235     252 ..     220     273 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7e-05
                   SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SS CS
  NAD_binding_2  8 GvMGsnmalnllkagykvavynrtkekveelvaegakaaes 48
                   G  G+  ++ ll+ag++v++  r+ +++ +l+a+ga+a+  
     KIR60647.1 10 GFVGAAVVRDLLDAGHQVVGLARSDSSAAALAAAGAEAHRG 50
                   889********************************665443 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.8
                    EEEEEEEES...HHHHHH CS
  NAD_binding_2 110 kfldaPVSG...GeegAe 124
                    + ld+PV+    G++  +
     KIR60647.1 235 RQLDVPVTSiaaGQADEH 252
                    455666543111333333 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.5   8.6e-05      0.11       7      68 ..      10      70 ..       3      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.6e-05
                SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE CS
      TrkA_N  7 GrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadavia 68
                G vG ++++ L + g+ +vv+  ++++ ++ l++ g+e+  g+  d + L++a  + ad+v+ 
  KIR60647.1 10 GFVGAAVVRDLLDaGH-QVVGLARSDSSAAALAAAGAEAHRGSLEDLAGLRAAA-SAADGVVH 70
                779**********555.8*****************************9998774.55666665 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.7    0.0001      0.13       1      57 [.       1      56 [.       1     119 [. 0.70

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
                EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BE CS
      DapB_N  1 ikvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvav 57
                ++v v+Ga+G +G +vv+ + + +++++v+   +++s++    ag  +++g+l+   
  KIR60647.1  1 MRVFVTGATGFVGAAVVRDLLD-AGHQVVGLARSDSSAAALAAAGAEAHRGSLEDLA 56
                89******************99.9999999999999888888888777777554333 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.5   0.00022      0.28       4     108 ..       4      91 ..       2      94 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00022
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 ++tG++G +G +++r l++ g + +v l+Rs     d  +  a+l+a gae +     + d + ++a+ ++++       Gv+h+A v + + ++    
  KIR60647.1   4 FVTGATGFVGAAVVRDLLDAGHQ-VVGLARS-----D--SSAAALAAAGAEAHRG--SLEDLAGLRAAASAAD-------GVVHTAFVHDFTDFAAAVR 85 
                 79******************975.6778899.....2..2356788888877654..4567777777777775.......9999999999998888777 PP

                 HHHHHH CS
          KR 103 edleqv 108
                  dl++v
  KIR60647.1  86 TDLRAV 91 
                 777665 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   0.00019      0.25       8      89 ..      14      92 ..       8      99 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00019
                     SHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC...TSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEE CS
  Methyltransf_11  8 GrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaek...lpfednsfDlvvssevlhhvedpekalkeiaRvLk 89
                      +++++l ++g++vvg+  s+   ++  +++ e+      +++++e+   l  + +  D vv + ++h + d ++a++   R ++
       KIR60647.1 14 AAVVRDLLDAGHQVVGLARSDSSAAALAAAGAEA------HRGSLEDlagLRAAASAADGVVHTAFVHDFTDFAAAVRTDLRAVE 92
                     56788899999*********99997776666666......4566665111667778*******************9998777766 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   0.00025      0.32       7      47 ..      10      51 ..       3      73 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00025
                SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETT CS
        ApbA  7 GaiGsllaakLakagadvtlilrsr.rlealkknGlrltseg 47
                G +G  +   L  ag++v+ ++rs+  ++al  +G + ++ +
  KIR60647.1 10 GFVGAAVVRDLLDAGHQVVGLARSDsSAAALAAAGAEAHRGS 51
                889**********************99999*****9988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2206.10
//
Query:       KIR60648.1  [L=225]
Description: hypothetical protein TK50_22370 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-27   95.6   3.8      5e-27   95.4   3.8    1.0  1  Amidohydro_2  Amidohydrolase


Domain annotation for each model (and alignments):
>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   3.8   2.8e-31     5e-27      78     290 ..       2     223 ..       1     224 [. 0.83

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 2.8e-31
                   HHHCTTCBECEEECTSSHCHHHHHHHHHHHHTTECEEEEESSTT..TCCTTTCGGHHHHHHHHHHHT-EEEEE....CHHHCHHHHHHHHHHHHHHH CS
  Amidohydro_2  78 akrpdrfvggaavvpldpedaaaeleraveelgfkGvrlnphvg..gddllgdrldrpifealeelglpvdihtGpspewlfggpqettraiqplll 172
                   a++pdr+++  +++   + d+a++  r    +g+ G+r+ + ++  ++ +l+++ +  +++a+e++++pv + ++                 +++ +
    KIR60648.1   2 ARHPDRLAAVLQLDE-TARDVAEQVARLRTRPGILGLRVTTTWPpgNSGRLRAGAYETLLAAAERHRVPVCLLAT----------------GDLPGV 81 
                   578999999877775.7888888888888888*********9962244444444557**************9955................8999** PP

                   CCHHHHCTTSEEEESGGGTT........TTCHHHHHH..HHHHHHHCCEEECCGHHHSSEEECCHHCHHHHHHHHHHH-GGGEEEE--......... CS
  Amidohydro_2 173 sgvarkfPnlkivlaHgGgp........serlraale..llarrpnvyvklsglytellyfdspladppalarlieavgpdrilfGsD......... 250
                   + +ar +P l++v++H+G +        ++++r++ +  +la++pnv vklsg++t +  + ++++ +p+l+++++a+g dr+++++D         
    KIR60648.1  82 AVIARAHPALPLVVDHLGLAqppyqtpdDPAWRDLAHllALAEFPNVSVKLSGAPTLSAAPYPYPDVWPHLRQVLDAFGVDRCMWATDqhrvsgrlp 178
                   ****************************88888765511568***********99999*************************************99 PP

                   .....BTSTTSTSCTTHHHHCHHHHHSSHHHHHHHHTHHHHHHCT CS
  Amidohydro_2 251 .....yPhptleaepealalldlvallsdeerekilggNAarlyg 290
                          hp +  + +al+ l +  +ls++e+++++gg+A+r++g
    KIR60648.1 179 gldplPRHPGYHSYAQALHYLLDRLDLSPAEQAALFGGTARRVLG 223
                   997743355555555555544444449****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1639.99
//
Query:       KIR60649.1  [L=124]
Description: glyoxalase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.4e-07   29.1   0.1    7.4e-06   26.2   0.1    1.9  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    2.8e-05   24.9   0.1    3.6e-05   24.5   0.1    1.2  1  Glyoxalase_6  Glyoxalase-like domain
     0.0089   15.9   0.0       0.12   12.3   0.0    2.1  1  Glyoxalase_2  Glyoxalase-like domain
  ------ inclusion threshold ------
      0.034   14.4   0.1       0.68   10.2   0.1    2.1  2  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
      0.065   12.5   0.0      0.098   12.0   0.0    1.2  1  Rad21_Rec8    Conserved region of Rad21 / Rec8 like protein


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   2.1e-09   7.4e-06       2     128 .]       5     118 ..       4     118 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2.1e-09
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGE CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvk 100
                 ++h+ ++++d e+s++F+++ L +     ++           f  +  +   l+ +  p+ + +         +h af+++d+   ++a++rl e+g++
  KIR60649.1   5 FNHTIIAARDREESARFFRQLLELPEAPSWG----------VFTNIQLTDGVLLQFAEPPVEIQM--------QHYAFLVDDDLF-DRAYRRLCEQGIE 84 
                 68999********************999999..........333333333333333333333333........478999988766.***********99 PP

                 EEEEEECHHCTEEEEE......EEEETTSEEEEE CS
  Glyoxalase 101 vvaepgrhyfgalysf......yfrDpdGillei 128
                   a p+ + +g   +       yf+Dp G+ +e+
  KIR60649.1  85 HWADPQMRRPGETNTEhggrgvYFKDPAGHAIEL 118
                 9999988888887766888899**********96 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1     1e-08   3.6e-05       3     106 ..       9     118 ..       7     119 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1e-08
  Glyoxalase_6   3 vldaadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpepaknrvHldlavedl..daevarlvalGArvlreprdgthgr... 94 
                    ++a+d ++ a+F++++l+++ ++           + + +d++ l f + p+ + +  H  + v+d   d++ +rl + G ++  +p+ +++g+   
    KIR60649.1   9 IIAARDREESARFFRQLLELPEAPSW-----GVFTNIQLTDGVLLQFAEPPV-EIQMQHYAFLVDDDlfDRAYRRLCEQGIEHWADPQMRRPGEtnt 99 
                   6899********************99.....222333457899999999999.44568******665579**********99999999988888899 PP

  Glyoxalase_6  95 .......vlaDPeGneFcv 106
                           ++DP+G+   +
    KIR60649.1 100 ehggrgvYFKDPAGHAIEL 118
                   99*************8766 PP

>> Glyoxalase_2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.4e-05      0.12       1     113 [.       5     118 ..       5     121 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.4e-05
                   ------EES-HHHHHHHHHHTT---EEEE-SSEEEETTS-EEEEHHHHHH----.---S--SS-EEEEEES-HHHHHHHH..GGGS-EEEEEE.... CS
  Glyoxalase_2   1 fklillvvkdieeskkFYedvlelkikldfGenvsfetgfalkedlkelinlde.siaeqsnnfeLyFevedvdaflqklkeaeniellhelk.... 92 
                   f+ ++++++d ees +F++++lel+    +G + +    ++l +++  l+++ e  +  q +++    + + +d +  +l e++ ie   +++    
    KIR60649.1   5 FNHTIIAARDREESARFFRQLLELPEAPSWGVFTN----IQLTDGV--LLQFAEpPVEIQMQHYAFLVDDDLFDRAYRRLCEQG-IEHWADPQmrrp 94 
                   78899********************9999996532....3333332..333333245556666666666777788888887777.777666551111 PP

                   ...E-TTS-EEEEEE-TT--EEEE CS
  Glyoxalase_2  93 ...ekpWgqrvirfyDpDkhiiEi 113
                      + + g r ++f Dp +h+iE+
    KIR60649.1  95 getNTEHGGRGVYFKDPAGHAIEL 118
                   111234677788888888888885 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.03   1.1e+02       2      24 ..       7      29 ..       6      59 .. 0.72
   2 ?   10.2   0.1   0.00019      0.68      68      94 ..      58      86 ..      40     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.03
                  EEEEE-S-HHHHHHHHHH.TT-E CS
  Glyoxalase_4  2 QigivVeDleaavarfsallGvg 24
                  ++ i+ +D e+ +++f +ll + 
    KIR60649.1  7 HTIIAARDREESARFFRQLLELP 29
                  8899**************99863 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00019
                  EEEEEEEEES-..HHHHHHHHCTTTEEEE CS
  Glyoxalase_4 68 glhhlaywvdd..ldaavarleeqGfevv 94
                  +++h a+ vdd  +d+a +rl eqG+e  
    KIR60649.1 58 QMQHYAFLVDDdlFDRAYRRLCEQGIEHW 86
                  689******9999*************965 PP

>> Rad21_Rec8  Conserved region of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.7e-05     0.098       5      30 ..       3      28 ..       1      30 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.7e-05
                HTT----------HHHHHHHHHHHHH CS
  Rad21_Rec8  5 kdslsllpagktRkeAArlFyelLvL 30
                +++  ++ a+++R+e+Ar F +lL+L
  KIR60649.1  3 VTFNHTIIAARDREESARFFRQLLEL 28
                56778999****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 810.70
//
Query:       KIR60650.1  [L=337]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-66  224.3   0.5    2.2e-66  223.9   0.1    1.4  2  NMT1      NMT1/THI5 like
    0.00085   19.1   0.0     0.0054   16.5   0.0    2.2  3  NMT1_2    NMT1-like family


Domain annotation for each model (and alignments):
>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.9   0.1   2.4e-70   2.2e-66       1     215 [.      50     262 ..      50     263 .. 0.98
   2 ?   -3.7   0.0         1   9.2e+03     130     150 ..     311     330 ..     301     332 .. 0.70

  Alignments for each domain:
  == domain 1  score: 223.9 bits;  conditional E-value: 2.4e-70
                 -GGGHHHHHHHHTTHHHHTTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--EEEEEECCC--SSGGGGTTSEEEE- CS
        NMT1   1 npnhaglyvAkekGYFkeeGldVeivepadpsdatelvasgkadfgvsyqesllaarakglpvvsvaallqeplsglivlkdsgikspkDLkGkrigyv 99 
                 n+nh+glyvAk+kG+F+++GldVeiv+p+d +da  lva++k  f++ yqe +++ara+g+p+vs+aa++q+++sg+++ kd+++++p+   Gk++g++
  KIR60650.1  50 NTNHTGLYVAKAKGFFAAHGLDVEIVQPGD-ADASSLVAADKIPFAIGYQEAVTQARAQGAPLVSIAAIVQHNTSGFASPKDRDLTRPAQYVGKTYGGF 147
                 89**************************99.******************************************************************** PP

                 S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT--.---SEEEEEEHHHHHH-HHHHHH CS
        NMT1 100 gspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaaiggyenwegvelesegkelrifaladlgvp.dyyslvlitnekllkenpelvkk 197
                 g+p e+ ll++++a+dggdps +++vnvg  ++++a  +g +D+ + ++++w g+e+e++g++++i +++d++++ d+y+++litnek ++ +pelvk+
  KIR60650.1 148 GGPLEEPLLRTIVAADGGDPSRIKTVNVGDADFFAATKKG-IDFEW-IFYGWTGIEAELRGEPVNIQYVRDYDPAlDFYTPILITNEKRIAGDPELVKA 244
                 *********************************9666666.*****.**************************************************** PP

                 HHHHHHHHHHHHHHSHHH CS
        NMT1 198 FlrAlkkGyeyalahPee 215
                 F +  ++Gy ya+++ +e
  KIR60650.1 245 FTAGASEGYTYAAKNAAE 262
                 *************99665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1
                 T-HHHHHHCTSSSEEECEETT CS
        NMT1 130 tslakalltgkvDaaiggyen 150
                 + la+++l+ +vDa+  +y+n
  KIR60650.1 311 WLLAQKVLATEVDATK-AYTN 330
                 5566778888888887.6666 PP

>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     6e-07    0.0054       5      67 ..      40     101 ..      36     136 .. 0.73
   2 ?   -3.2   0.0      0.62   5.5e+03     138     169 ..     155     185 ..     147     187 .. 0.80
   3 ?   -0.8   0.0      0.11     1e+03     210     252 ..     228     267 ..     222     268 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6e-07
      NMT1_2   5 keqlklGfialtdaaplvvakekglfakeGltvelekqaswaelrdkllagelDaahvltpap 67 
                 k q+ l + ++t+++ l vak kg+fa +Gl+ve+  q + a ++  ++a ++  a+  ++a+
  KIR60650.1  40 KIQVALDWTPNTNHTGLYVAKAKGFFAAHGLDVEI-VQPGDADASSLVAADKIPFAIGYQEAV 101
                 5689999*************************996.567777777777777777777744444 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.62
      NMT1_2 138 llrywLaaaGldpeadvklvvvpppqmvanlk 169
                 llr+ +aa G dp + +k+v v  ++  a+ k
  KIR60650.1 155 LLRTIVAADGGDP-SRIKTVNVGDADFFAATK 185
                 7899999999999.889999988887776655 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.11
      NMT1_2 210 lgvredfveknpntaralvkalleAtkwldakkenraeaakll 252
                 l ++e+ ++  p++++a++    e   +     +n+ae+a++l
  KIR60650.1 228 LITNEKRIAGDPELVKAFTAGASEGYTYAA---KNAAESAQIL 267
                 677788888889999998888777766666...6888998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2379.28
//
Query:       KIR60651.1  [L=255]
Description: nitrate ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-21   77.1  16.8    1.3e-21   77.1  16.8    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1     0.053   9.6e+02     100     118 ..       2      20 ..       1      32 [. 0.76
   2 !   77.1  16.8   7.5e-26   1.3e-21       2     172 ..      72     238 ..      71     243 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.053
  BPD_transp_1 100 kvvlPnalppiitglilaf 118
                   +v+l+  +pp++t+++l+ 
    KIR60651.1   2 TVALRRWAPPVATLVALVG 20 
                   5888999999999988764 PP

  == domain 2  score: 77.1 bits;  conditional E-value: 7.5e-26
  BPD_transp_1   2 illGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                     +G+l+a  l+   +l+ +++pl  v + +P++++a+llv       +lg++i p +++++l  +++v + + ++lr  +     + ++ Ga+r+q
    KIR60651.1  72 AATGLLVAvvLHLVPVLRAAVYPLLVVSQNVPIIAIAPLLV------VWLGFGIAPKLVVIVLVCFFPVAVATLDGLRRGDPVIADYLLMSGANRRQ 162
                   568999999999*****************************......9************************************************* PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlva 172
                   +f     P+alp++++gl +a+++++ gav+ e++gs++G+g+ ++   +++  + + +++++++v+a+l++ lva
    KIR60651.1 163 MFTAFQWPAALPTMFSGLKIAATYSVFGAVISEWIGSDQGIGRYMIVQKSAFRADRMFVAIAVVVVLALLVFGLVA 238
                   *******************************************************999999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       969  (0.0540465); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1842.78
//
Query:       KIR60652.1  [L=458]
Description: 5,10-methylene tetrahydromethanopterin reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-53  182.7  13.8    1.9e-53  181.9  13.8    1.3  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.9  13.8   1.1e-57   1.9e-53      12     310 ..      28     390 ..      17     394 .. 0.85

  Alignments for each domain:
  == domain 1  score: 181.9 bits;  conditional E-value: 1.1e-57
  Bac_luciferase  12 ggalgaasaslrylvelaraaEelGfdavwvaehhggpgga................ldaftllaalaaaTerirlgtavtplytrhPavlAqqa 90 
                     ++++++++ +l+y ++ ar +E+  fda++va+++g+ +                   d++  ++a+aa+T+++++ ++v+++y  +P++ A+  
      KIR60652.1  28 DSQAHRYR-DLDYWLDTARILERGRFDALFVADALGPLDVYqgrvdaalrdgiqtptDDPLLAISAMAAVTRHLGFAVTVSTTY-EQPYAFARKM 120
                     44556666.9**************************9777799*****************************************.********** PP

  Bac_luciferase  91 atLdhlsgGRfglglgtggpaveerrfGv....dhderyarlrEfvevlrrlwrg......................eevdfeGeffsvkgalll 159
                      tLdhl+gGR+g++++t+   + +r+ G+    +hderya+++Ef+e++ rlw++                      ++v +eG +++v ++ l 
      KIR60652.1 121 TTLDHLTGGRIGWNIVTSALDSAARNLGLvtqlPHDERYAMAEEFMEAVYRLWESswaddavvrdaasgifvdparvRPVGHEGTWYRVPDIALA 215
                     *****************************************************669999*****************8888*********888888 PP

  Bac_luciferase 160 prpgqgpiP.vyvaaaspaglelaarhadglllageppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraearaliagld.... 249
                      + +q+  P +y a++spag+++a+rha+g++l    p  a++l+  +r++a +agrdpa++r+ + +tvivadt++eAra+++++ +       
      KIR60652.1 216 EPGVQR-TPvLYQAGTSPAGRAFAGRHAEGVFLSAYLPSMARRLVSGVREQAVAAGRDPASVRFFAIATVIVADTDDEARAKLADYQRYASvega 309
                     777777.8989999999******************************************************************666644446688 PP

  Bac_luciferase 250 ................fyaldsegagreaeaa........eiqeeedanlwagaadavpdelvaatalvGtpeqvaerlaa.yaea 310
                                            ++  + +++        + +++ ++    +a +     ++ + ++vG+p++va++l++ + ea
      KIR60652.1 310 larwsalmhidlsaldL-----DRPLEYVDTDgirgmvelFTTLDPSRTWTPRAIAEFVGVGGGGPVIVGSPATVADELERwMDEA 390
                     89999999999665541.....4444444444334444444444444444444444444446777777***********9955555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3654.07
//
Query:       KIR60653.1  [L=129]
Description: hypothetical protein TK50_22415 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1132.52
//
Query:       KIR60654.1  [L=213]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-23   82.2   0.0    3.7e-23   81.8   0.0    1.2  1  Response_reg  Response regulator receiver domain
      6e-19   67.3   0.0    8.6e-19   66.8   0.0    1.2  1  GerE          Bacterial regulatory proteins, luxR family
     0.0002   21.0   0.0     0.0004   20.0   0.0    1.4  1  Sigma70_r4_2  Sigma-70, region 4
    0.00054   19.5   0.0     0.0012   18.4   0.0    1.5  1  HTH_24        Winged helix-turn-helix DNA-binding
    0.00065   19.5   0.6     0.0019   18.0   0.2    1.9  2  DUF742        Protein of unknown function (DUF742)
    0.00086   18.8   0.0     0.0018   17.7   0.0    1.6  1  Sigma70_r4    Sigma-70, region 4
      0.005   16.6   0.1      0.012   15.4   0.1    1.6  1  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
      0.026   14.6   0.0      0.084   13.0   0.0    1.9  1  HTH_28        Helix-turn-helix domain
       0.12   12.4   1.3        1.7    8.8   0.1    2.9  2  HTH_20        Helix-turn-helix domain
        0.2   12.1   0.0       0.36   11.3   0.0    1.4  1  HTH_40        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   2.1e-26   3.7e-23       1     112 []       4     118 ..       4     118 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 2.1e-26
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealkaga 94 
                   vl++dD+ +vr+++  ++  + ++e v+ea dg ea+el+++ ++d++llDi+mp+++Gl++l+++      + ++v+++t+ + +e++++al+ ga
    KIR60654.1   4 VLVADDQAMVRTGFGMIIGaQPDMELVGEAGDGVEAVELTRRLRPDVVLLDIRMPRLNGLDALRRLAGPGvvDPVRVVVVTTFDLDEYVHAALRNGA 100
                   89*****************99*********************************************99988888*********************** PP

                   SEEEESSG-HHHHHHHHH CS
  Response_reg  95 ddflsKpfdpeeLlkale 112
                    +fl K+  p+ L++a++
    KIR60654.1 101 CGFLLKDSGPALLVEAVR 118
                   **************9985 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   4.8e-22   8.6e-19       3      57 .]     152     206 ..     150     206 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 4.8e-22
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 Ls+RE++v rl+a G +n eIA++l+iS  TVk+h+++++ KL++++rve++ +a
  KIR60654.1 152 LSPRELDVVRLVARGATNAEIAAKLFISVGTVKTHLGSVQAKLDARNRVEIAAWA 206
                 9**************************************************9987 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.2e-07    0.0004      10      47 ..     151     187 ..     150     188 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.2e-07
                   TS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHH CS
  Sigma70_r4_2  10 eLperqreifllryleglsykEIAellgisegtVksrl 47 
                    L++r+  ++ l    g + +EIA++l is+gtVk++l
    KIR60654.1 151 GLSPRELDVVRL-VARGATNAEIAAKLFISVGTVKTHL 187
                   699999999999.789*********************8 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.6e-07    0.0012      17      38 ..     166     187 ..     159     191 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.6e-07
      HTH_24  17 risqreLAerlglSpstvnrrl 38 
                 + +++e+A +l +S++tv+++l
  KIR60654.1 166 GATNAEIAAKLFISVGTVKTHL 187
                 68******************98 PP

>> DUF742  Protein of unknown function (DUF742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.82   1.5e+03      72     111 ..       2      37 ..       1      40 [. 0.68
   2 !   18.0   0.2     1e-06    0.0019      34      79 ..     145     190 ..     116     204 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.82
      DUF742  72 vrvLlsdLldaglltvrapvtdraaeqpdrelLeevlsGL 111
                 +rvL++d  d+ ++++   ++   ++qpd el+ e  +G 
  KIR60654.1   2 IRVLVAD--DQAMVRTGFGMII--GAQPDMELVGEAGDGV 37 
                 5777777..5666666666665..6788988888877775 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1e-06
      DUF742  34 gapeaarlqpehrailrLcreplsVaelaAelklPvgvvrvLlsdL 79 
                 ++p++a l+p + +++rL+++  + ae+aA+l + vg+v+  l++ 
  KIR60654.1 145 ARPDPAGLSPRELDVVRLVARGATNAEIAAKLFISVGTVKTHLGSV 190
                 5566799*********************************998876 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     1e-06    0.0018       4      41 ..     151     187 ..     150     195 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1e-06
                 HS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHH CS
  Sigma70_r4   4 sLpererevlelrfgeglTleEIgerlgiSrerVrqie 41 
                  L++re +v++l+  +g T +EI+++l iS ++V+ ++
  KIR60654.1 151 GLSPRELDVVRLVA-RGATNAEIAAKLFISVGTVKTHL 187
                 7***********96.677*****************875 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   6.7e-06     0.012      10      35 ..     159     184 ..     155     187 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.7e-06
      HTH_23  10 illllaeGlsvreIAreLgvsrrTvy 35 
                 +++l+a+G++ +eIA++L +s  Tv 
  KIR60654.1 159 VVRLVARGATNAEIAAKLFISVGTVK 184
                 89**********************96 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.7e-05     0.084       3      31 ..     157     185 ..     157     188 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.7e-05
      HTH_28   3 leiikllaaGhsvreaArelgisrrtvyr 31 
                 l +++l+a+G + +e+A++l is  tv+ 
  KIR60654.1 157 LDVVRLVARGATNAEIAAKLFISVGTVKT 185
                 579***********************976 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.87   1.6e+03      23      38 ..      35      57 ..      29      81 .. 0.56
   2 ?    8.8   0.1   0.00093       1.7       9      45 ..     153     187 ..     118     190 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.87
                TTB-HHHHHHHHT.......S-H CS
      HTH_20 23 egltaselaerld.......lsk 38
                +g+ a el +rl+       +++
  KIR60654.1 35 DGVEAVELTRRLRpdvvlldIRM 57
                67777788888733333333333 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00093
                 -HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHH CS
      HTH_20   9 hPvRrrilraLaraegltaselaerldlskntlsyHL 45 
                 +P  +++ r+   a+g+t +e+a+ l +s  t+  HL
  KIR60654.1 153 SPRELDVVRLV--ARGATNAEIAAKLFISVGTVKTHL 187
                 45556666666..**********************99 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0002      0.36       7      38 ..     161     192 ..     157     204 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
      HTH_40   7 elleeglsieeIAkerglkesTIegHLaelie 38 
                 +l+  g + +eIA++  ++++T+ +HL +   
  KIR60654.1 161 RLVARGATNAEIAAKLFISVGTVKTHLGSVQA 192
                 6788999********************88655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1683.72
//
Query:       KIR60655.1  [L=250]
Description: peptide ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.5e-30  104.2   0.0    9.6e-30  103.9   0.0    1.1  1  ABC_tran     ABC transporter
    6.7e-09   36.0   0.0     0.0012   18.8   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    3.1e-05   23.6   0.1    5.9e-05   22.7   0.1    1.4  1  AAA_29       P-loop containing region of AAA domain
      7e-05   23.1   0.0    0.00033   21.0   0.0    1.8  1  AAA_22       AAA domain
    0.00024   20.6   0.0      0.025   14.0   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
    0.00046   20.8   0.0     0.0006   20.4   0.0    1.1  1  AAA_23       AAA domain
    0.00083   19.8   0.4     0.0013   19.2   0.4    1.4  1  AAA_16       AAA ATPase domain
     0.0012   18.4   0.3      0.023   14.3   0.1    2.2  2  AAA_25       AAA domain
     0.0019   18.2   0.0     0.0029   17.6   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
     0.0025   17.6   1.3      0.012   15.4   0.5    2.2  2  AAA_30       AAA domain
  ------ inclusion threshold ------
       0.04   13.3   0.0       0.18   11.1   0.0    1.8  2  ATPase       KaiC
       0.13   11.2   0.0        1.6    7.6   0.1    2.0  2  AAA_10       AAA-like domain
       0.15   12.2   0.0       0.26   11.4   0.0    1.6  1  MMR_HSR1     50S ribosome-binding GTPase
       0.21   11.3   0.1       0.45   10.2   0.1    1.6  2  AAA_24       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.0   7.5e-33   9.6e-30       1     136 [.      31     177 ..      31     178 .. 0.91

  Alignments for each domain:
  == domain 1  score: 103.9 bits;  conditional E-value: 7.5e-33
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren...........esdee 84 
                 l+ v++ +++   +ai+G++G+GKStL+ +lagl + t+G++ll g+dl +      +++ r++ig+++q  +l p+lt+++n            ++e 
  KIR60655.1  31 LDGVTVGFRRAAFTAIMGPSGSGKSTLMHCLAGLDTATSGQVLLGGTDLGRqsdrVLTRVRRERIGFVFQSFNLLPQLTAAQNvtlpldlagrgVDREF 129
                 6899********************************************999766555678899*************************99988555555 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++++ lg+ +  +++    ps+LSgGq+qr alaral+++p+++++DEpt
  KIR60655.1 130 LDHVVDALGIGDRLAHR----PSELSGGQQQRAALARALVSRPEVVFADEPT 177
                 99999999999955555....5*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   9.5e-06     0.012       1      27 [.      43      66 ..      43     107 .. 0.70
   2 !   18.8   0.0   9.2e-07    0.0012     233     300 ..     146     211 ..     114     214 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.5e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldr 27
                ++++ Gp gsGKS+L+ +l +l   d+
  KIR60655.1 43 FTAIMGPSGSGKSTLMHCLAGL---DT 66
                79*****************999...33 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 9.2e-07
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQv.iltTHSpl 300
                  ++elS G+++ +al+ al +++    +++ DEp  +L+ ++ +++l+ll+++ r+++Q  +++TH+p+
  KIR60655.1 146 RPSELSGGQQQRAALARALVSRP---EVVFADEPTGNLDSRAGAEVLGLLRDCVRTLGQTvVMVTHDPV 211
                 57899*******99999999999...9****************************888887*******8 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   4.6e-08   5.9e-05      12      41 ..      31      60 ..      29      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.6e-08
      AAA_29 12 fdghtieidlkgatlltGpsGsGKSTllDA 41
                +dg t+ ++++ +t ++GpsGsGKSTl+  
  KIR60655.1 31 LDGVTVGFRRAAFTAIMGPSGSGKSTLMHC 60
                577889999888***************955 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.5e-07   0.00033       4     117 ..      40     197 ..      38     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.5e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.......................................erpevvfvtlpsstsskdllrellra 63 
                 +a +++++G+sG+GK+tl+  l+  +++ +   +                                       ++  ++  +l++ +  +++l +++ a
  KIR60655.1  40 RAAFTAIMGPSGSGKSTLMHCLAGLDTATSG--QvllggtdlgrqsdrvltrvrrerigfvfqsfnllpqltaAQNVTLPLDLAGRGVDREFLDHVVDA 136
                 6789*******************99864433..256999999999999999999999999999999999998877777899999999999999999999 PP

      AAA_22  64 lglelkaerlsseell.ealeqalrarav...ielliiDEaqh.lr.s..eealeeLrslln 117
                 lg +     ++ +el   + ++a+ ara    +e++  DE    l+ +  +e+l  Lr+++ 
  KIR60655.1 137 LGIGDRL-AHRPSELSgGQQQRAALARALvsrPEVVFADEPTGnLDsRagAEVLGLLRDCVR 197
                 9976655.677777777777777777777788889999998777986256999999999988 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.9e-05     0.025      23      44 ..      40      61 ..      27      68 .. 0.84
   2 ?    4.7   0.0     0.013        17     135     208 ..     148     219 ..      87     226 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.9e-05
                TSSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 23 sksftaivGpNGSGKsnlldAi 44
                   ftai+Gp GSGKs l+  +
  KIR60655.1 40 RAAFTAIMGPSGSGKSTLMHCL 61
                467**************99765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.013
                 TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEE.E-SSHHHCCC-SCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.xxxxxxxxxxxxxx RF
       SMC_N 135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfiv.islreemlekadkl 208
                 ++LSgG+++ +ala  +     +p+ +++ De   +LD +  ++v  ll+    +  Q +v ++++    + ad++
  KIR60655.1 148 SELSGGQQQRAALARAL---VSRPE-VVFADEPTGNLDSRAGAEVLGLLRDCVRTlGQTVVmVTHDPVAAAYADRV 219
                 48*******99988553...23444.45569999999999999999999976555456555255555555555655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.7e-07    0.0006       7      40 ..      28      62 ..      26      90 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.7e-07
      AAA_23  7 frsfrdqeidF.skgltlItGpNGaGKTTildAik 40
                +r ++++++ F    +t+I Gp G+GK+T++ ++ 
  KIR60655.1 28 VRALDGVTVGFrRAAFTAIMGPSGSGKSTLMHCLA 62
                677888999996669****************9986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.4   9.9e-07    0.0013      25     107 ..      42     146 ..      19     206 .. 0.58

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 9.9e-07
      AAA_16  25 elvllsGesGvGKsslvrellralekdg.giflrgkcdql.esa.....ipysalaqalareellrqllde......aesaeleawrekleeala.... 106
                   + + G+sG+GKs+l+ +l+  l ++  g +l g +d   +s+     +++  +  ++    ll ql ++      ++ a ++ +re+l+ ++     
  KIR60655.1  42 AFTAIMGPSGSGKSTLMHCLAG-LDTATsGQVLLGGTDLGrQSDrvltrVRRERIGFVFQSFNLLPQLTAAqnvtlpLDLAGRGVDREFLDHVVDalgi 139
                 67889****************5.5555339999998888843335554422233444444457777777765555553333444444444443335555 PP

      AAA_16 107 ......a 107
                        
  KIR60655.1 140 gdrlahR 146
                 5544331 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.8e-05     0.023      28      65 ..      37      75 ..      13     102 .. 0.77
   2 ?    2.1   0.0     0.094   1.2e+02     161     188 ..     181     208 ..     152     214 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.8e-05
      AAA_25 28 gllpagelallaGapgtGKttlaldla.lava.tGkpwlg 65
                g+ ++ ++++++G++g+GK+tl   la l++a +G+ +lg
  KIR60655.1 37 GF-RRAAFTAIMGPSGSGKSTLMHCLAgLDTAtSGQVLLG 75
                66.5899***************988874666656665655 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.094
      AAA_25 161 snsdvgalvealeriarrtgaavllvhH 188
                 ++++ ++++  l++  r +g +v++v H
  KIR60655.1 181 DSRAGAEVLGLLRDCVRTLGQTVVMVTH 208
                 445558899999999999*********9 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.2e-06    0.0029     100     129 ..      42      71 ..      15      93 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.2e-06
                  SEEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktge 129
                   +++++G+SG GKStL+  l++ +++  g+
   KIR60655.1  42 AFTAIMGPSGSGKSTLMHCLAGLDTATSGQ 71 
                  7899****************9976665555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.5   9.2e-06     0.012      19      60 ..      42      84 ..      35     206 .. 0.80
   2 ?    1.2   0.1       0.2   2.6e+02       6      60 ..     156     214 ..     151     247 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.2e-06
      AAA_30 19 rvavltGpAGtGKttalkalreaweaa.ggrviglAptgkaAk 60
                 ++++ Gp G+GK+t++  l+ + +a  g+ ++g +  g++++
  KIR60655.1 42 AFTAIMGPSGSGKSTLMHCLAGLDTATsGQVLLGGTDLGRQSD 84
                57899********************995544445555555555 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.2
      AAA_30   6 QaaavealltsgdrvavltGpAGtGKt....talkalreaweaaggrviglAptgkaAk 60 
                 Q+aa++++l s+  v+++  p G   +     +l+ lr+ +++ g++v+++++   aA+
  KIR60655.1 156 QRAALARALVSRPEVVFADEPTGNLDSragaEVLGLLRDCVRTLGQTVVMVTHDPVAAA 214
                 55555555555555555554444322211114556666666666666666666666554 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00014      0.18       3      35 ..      26      57 ..      24      62 .. 0.89
   2 ?   -0.5   0.0      0.51   6.5e+02     144     169 ..     188     214 ..     179     228 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
      ATPase  3 tgIeglDeilkgGipegrvvlitGepGtGKtif 35
                t +  lD ++  G+ +++ + i+G +G+GK+++
  KIR60655.1 26 TAVRALDGVT-VGFRRAAFTAIMGPSGSGKSTL 57
                7788899986.9******************997 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.51
      ATPase 144 lrqlvrvl.kklgvTailvseksssee 169
                 +  l+r   + lg+T ++v+  ++ + 
  KIR60655.1 188 VLGLLRDCvRTLGQTVVMVTHDPVAAA 214
                 444444433899999999988766544 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0012       1.6      19      52 ..      39      72 ..      19      78 .. 0.76
   2 ?    1.3   0.0     0.097   1.2e+02     242     283 ..     169     210 ..     158     217 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0012
      AAA_10 19 tnasasliiGdlGnGKSvlakllvlyisllggka 52
                 +a  ++i+G+ G GKS l+  l    ++  g++
  KIR60655.1 39 RRAAFTAIMGPSGSGKSTLMHCLAGLDTATSGQV 72
                456678**************99876666666665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.097
      AAA_10 242 kvvifDEawiftssaeGkkllkelvRiG.Rsynaavylvtqsa 283
                 +vv+ DE     +s  G+++l  l+R+  R     v++vt+++
  KIR60655.1 169 EVVFADEPTGNLDSRAGAEVLG-LLRDCvRTLGQTVVMVTHDP 210
                 67888**************986.566666***********986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0002      0.26       3      22 ..      45      64 ..      43     136 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
                EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge 22
                ai+G + +GKStL+  l g 
  KIR60655.1 45 AIMGPSGSGKSTLMHCLAGL 64
                8**************99985 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00035      0.45       5      22 ..      44      61 ..      40      83 .. 0.82
   2 ?   -2.4   0.0       2.6   3.3e+03     107     130 ..     184     208 ..     182     209 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00035
      AAA_24  5 iliyGpsgiGKTtlakel 22
                 +i+Gpsg+GK+tl+  l
  KIR60655.1 44 TAIMGPSGSGKSTLMHCL 61
                589***********9876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.6
      AAA_24 107 laeefrrllkk.lqelrknvifiah 130
                 +++e+  ll++ ++ l+++v+++ h
  KIR60655.1 184 AGAEVLGLLRDcVRTLGQTVVMVTH 208
                 567888899998999999***9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 1628.94
//
Query:       KIR60656.1  [L=390]
Description: hydroxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-25   89.9   8.8    1.7e-25   89.9   8.8    2.1  2  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
    4.5e-08   33.8   0.0    1.1e-07   32.5   0.0    1.6  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    6.1e-08   33.0   1.9    6.6e-08   32.9   0.7    1.6  2  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
      0.004   17.3   0.0     0.0076   16.4   0.0    1.4  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.14   6.3e+02      53      83 ..      12      43 ..       8      48 .. 0.60
   2 !   89.9   8.8   3.7e-29   1.7e-25       3     132 ..     238     369 ..     236     371 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.14
                   HHHHHHHHHHHHHHHH.HHTT----HHHHHHH CS
  Acyl-CoA_dh_2 53 AAralleraaaraeal.aaagkevtvedraea 83
                   A r+l  + a+rae++ aa+g +v+  dr++a
     KIR60656.1 12 AVRELAPELARRAEEIeAARGLPVDLLDRLRA 43
                   55555555566655554566666666666554 PP

  == domain 2  score: 89.9 bits;  conditional E-value: 3.7e-29
                    HHHHHHHHHHHHHHHHHHHHH.HHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---.-HHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   3 iaavalGaAraalaefvelar.ervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkev.tvedraearraaalavelaia 96 
                    ++ava+G+A++al+++v l   +r r +++++lad+pa+  +l++a   ++AArall++ a++  ++a++g +   +++  +++++  +++e ++a
     KIR60656.1 238 LGAVAVGIAQGALDDTVTLLDgGRRRLYARQSLADSPAFRERLGRADLHVRAARALLRSLADDLFRAAHGGGPAaFAALQPRISASLPWVTEVTAA 333
                    78****************9998999**********************************************99944567779999999******** PP

                    HHHHHHHHCGGGGGBTT-HHHHHHHHHHHHCTSGGG CS
  Acyl-CoA_dh_2  97 avdalfeaaGgsalrkesplqRlwRDahaaaaHaal 132
                    avda+++a+Gg a r++sp+qR++RD+h+ ++Haa+
     KIR60656.1 334 AVDACYRATGGGAARDSSPVQRRFRDIHTFSQHAAA 369
                    *********************************986 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   2.4e-11   1.1e-07      10      86 ..      12      87 ..       2      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 2.4e-11
                   HHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHH CS
  Acyl-CoA_dh_N 10 tvrefaeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhs 86
                   +vre+a  ela +a+e+++++  p +l+++l ++G + + vp  +gG ++d+ + + v+e larad +++ +++++ 
     KIR60656.1 12 AVRELAP-ELARRAEEIEAARGLPVDLLDRLRAAGCFRMFVPRSHGGYDADPHTGLAVLEALARADGSTGWTVMIGA 87
                   5677655.477789999988889*9*******************************************999776654 PP

>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.7   7.7e+03      97     115 ..      15      33 ..      12      44 .. 0.68
   2 !   32.9   0.7   1.5e-11   6.6e-08      17     130 ..     237     362 ..     229     366 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.7
                    HHHHHHHHHHHHHHGGGTT CS
  Acyl-CoA_dh_1  97 elaqevadlamqllGgaGy 115
                    ela e+a++a ++  ++G+
     KIR60656.1  15 ELAPELARRAEEIEAARGL 33 
                    5666777777777766665 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 1.5e-11
                    ---..-SHHHHHHHHHHHHHH...HTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH....--------......HHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_1  17 avaaaalglarraleealeya...rrrkafgkplidhqlvreklaemaaeleaarllvyraae....aldagkpd......raeasmaKlfasela 99 
                     ++a a+g+a+ al+ ++ ++   rrr    + l+d+++ re+l++    ++aar+l++ +a     a++ g+ +      ++++s+   +++e+ 
     KIR60656.1 237 HLGAVAVGIAQGALDDTVTLLdggRRRLYARQSLADSPAFRERLGRADLHVRAARALLRSLADdlfrAAHGGG-PaafaalQPRISASLPWVTEVT 331
                    67899************999855456666779******************************96553333333.36*****99************* PP

                    HHHHHHHHHHHGGGTTSGGGHHHHHHHHTHH CS
  Acyl-CoA_dh_1 100 qevadlamqllGgaGyleeypverlyrdarv 130
                      ++d +    Gg +  ++ pv+r +rd+ +
     KIR60656.1 332 AAAVDACYRATGGGAARDSSPVQRRFRDIHT 362
                    ****************************976 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.7e-06    0.0076      21      96 ..     123     204 ..     114     205 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.7e-06
                    EEETT.EEEEEEEEEEEETTTT-SEEEEEEE...TS---.......----EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE. CS
  Acyl-CoA_dh_M  21 aerdggeyvlnGeKiwitnaaiatlalvlar...tekpd.......rarglslflvprdapgvsvrrieeklGlrglptgelvfed 96 
                    ae ++g++ ++G+  + +++++a++++  +        +       +  +++ +l+p  a  v+v+++++ lGlrg+ +++++ + 
     KIR60656.1 123 AELADGGFQVTGRWAFASGSRHADWIFGNCVltgD--GQplpgpagQPVEVRSMLLP--AGQVTVEDTWHALGLRGTGSHDVRVDA 204
                    6778899*******************888887442..33335444666777777888..6789*****************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2669.47
//
Query:       KIR60657.1  [L=220]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-21   76.4   0.0    2.7e-21   75.8   0.0    1.3  1  Response_reg  Response regulator receiver domain
    3.7e-19   68.0   0.0    5.3e-19   67.5   0.0    1.2  1  GerE          Bacterial regulatory proteins, luxR family
    1.4e-06   27.8   0.0      3e-06   26.8   0.0    1.6  1  Sigma70_r4_2  Sigma-70, region 4
    0.00036   20.2   0.1     0.0011   18.6   0.0    1.8  2  HTH_38        Helix-turn-helix domain
    0.00076   18.9   0.2     0.0019   17.7   0.2    1.7  1  Sigma70_r4    Sigma-70, region 4
      0.002   17.8   2.7      0.002   17.8   2.7    1.5  2  TadZ_N        Pilus assembly protein TadZ N-terminal
     0.0059   16.4   0.3      0.025   14.4   0.0    2.1  2  HTH_23        Homeodomain-like domain
     0.0066   16.5   0.3      0.023   14.8   0.1    2.0  2  HTH_20        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.014   15.4   0.1      0.043   13.8   0.1    2.0  1  HTH_29        Winged helix-turn helix
      0.021   15.3   0.0      0.031   14.7   0.0    1.3  1  HTH_40        Helix-turn-helix domain
      0.025   14.1   0.1      0.049   13.2   0.1    1.5  1  HTH_24        Winged helix-turn-helix DNA-binding
       0.06   13.2   0.1        2.9    7.8   0.0    2.5  2  HTH_10        HTH DNA binding domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0   1.8e-24   2.7e-21       1     111 [.      10     122 ..      10     123 .. 0.96

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 1.8e-24
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSS.SEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTES CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpg.mdGlellkeireedpelpviiltahseeedavealkagad 95 
                   v +vdD+p++r +++ ll    g+e+v+ea+d++ea++ ++  ++++i++D+ + g  +G+e+++ei  ++p + v+++t+ ++++ + +al+aga 
    KIR60657.1  10 VAVVDDHPVFRLGMTALLAsTPGLEVVGEAADADEAVRVADLTRPQVIIMDLHLGGgRSGVEATREIVGRHPGIGVLVVTMLDDDDSVFAALRAGAR 106
                   789****************88**********************************989*************************************** PP

                   EEEESSG-HHHHHHHH CS
  Response_reg  96 dflsKpfdpeeLlkal 111
                   ++l K  +p e+  a+
    KIR60657.1 107 GYLLKGAAPGEVDRAV 122
                   *****99998877665 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   3.5e-22   5.3e-19       3      57 .]     158     212 ..     156     212 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 3.5e-22
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 L++RErevL l+a+G+sn  IA++l +S+kTV++h+sn++ KL+v +r++++r a
  KIR60657.1 158 LTDREREVLDLVAQGLSNLVIARRLTLSPKTVRNHLSNVLGKLQVADRSQAIRRA 212
                 9***************************************************976 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0     2e-09     3e-06      10      54 .]     157     200 ..     155     200 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2e-09
                   TS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  10 eLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   eL+ r+re++ l   +gls   IA++l +s++tV+++ls  + kL
    KIR60657.1 157 ELTDREREVLDL-VAQGLSNLVIARRLTLSPKTVRNHLSNVLGKL 200
                   799*********.79***********************9887766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   7.6e-07    0.0011       5      41 ..     158     193 ..     156     195 .. 0.91
   2 ?   -2.3   0.0       2.6   3.8e+03      11      22 ..     207     218 ..     199     219 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 7.6e-07
      HTH_38   5 LsleeReeIerllaeGlslreIArrLgrspsTIsREl 41 
                 L+  eR e  +l a+Gls+  IArrL  sp T+ ++l
  KIR60657.1 158 LTDRER-EVLDLVAQGLSNLVIARRLTLSPKTVRNHL 193
                 888899.7789***********************987 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.6
      HTH_38  11 eeIerllaeGls 22 
                 + I r +++Gl+
  KIR60657.1 207 QAIRRAREAGLG 218
                 357777888876 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   1.2e-06    0.0019       4      49 ..     157     201 ..     155     202 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.2e-06
                 HS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Sigma70_r4   4 sLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLR 49 
                 +L++rerevl l+  +gl+   I++rl +S  +Vr ++++ l kL+
  KIR60657.1 157 ELTDREREVLDLVA-QGLSNLVIARRLTLSPKTVRNHLSNVLGKLQ 201
                 7***********95.8889999**********************96 PP

>> TadZ_N  Pilus assembly protein TadZ N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   2.7   1.3e-06     0.002      22     132 ..      27     139 ..      10     140 .. 0.81
   2 ?   -3.2   0.0       4.2   6.3e+03      56      63 ..     172     179 ..     165     203 .. 0.48

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.3e-06
                 TTTT.EEEEE--ST-HHHHHHHHHHHT-SEEEEEE-TTTHHHHHHHHHHHHHH-TT-EEEEEE-TT-HHHHHHHHHHT-SEEEETT-BHHHHHHHHHHH CS
      TadZ_N  22 lasa.gqvvpagsasleellalldvtaagvlfislgksnlvsqgalveglvsarpmlsvvaigdgldnqlvlaamragardfitygaraseltglirrl 119
                 las+ g  v   +a  +e + + d+t   v+++ l      s       +v   p + v+ +    d++ v+aa+ragar ++  ga   e+   +r +
  KIR60657.1  27 LASTpGLEVVGEAADADEAVRVADLTRPQVIIMDLHLGGGRSGVEATREIVGRHPGIGVLVVTMLDDDDSVFAALRAGARGYLLKGAAPGEVDRAVRAV 125
                 55552444555677889999999999999999999888888888888999*********999999999************************9999987 PP

                 H.TTS-SS--XXXX CS
      TadZ_N 120 g.grlpsvpvsaar 132
                   g +   pv a+r
  KIR60657.1 126 AnGEVLLGPVVASR 139
                 42666666776665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.2
                 -TTTHHHH CS
      TadZ_N  56 gksnlvsq 63 
                 g snlv  
  KIR60657.1 172 GLSNLVIA 179
                 33333322 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.7e-05     0.025       9      38 ..     164     193 ..     157     197 .. 0.89
   2 ?   -1.0   0.1       1.1   1.6e+03       4      17 ..     202     216 ..     199     220 .] 0.69

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTvyrwl 38 
                 ++l l+a+Gls   IAr+L  s+ Tv++ l
  KIR60657.1 164 EVLDLVAQGLSNLVIARRLTLSPKTVRNHL 193
                 699***********************9865 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
      HTH_23   4 ereRlrillllae.G 17 
                 + +R ++++ ++e G
  KIR60657.1 202 VADRSQAIRRAREaG 216
                 567788888888774 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.5   3.8e+03      12      32 ..      20      47 ..      14      56 .. 0.54
   2 !   14.8   0.1   1.5e-05     0.023      13      48 ..     163     197 ..     160     201 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.5
                HHHHHHHH.......STCTTB-HHHHHH CS
      HTH_20 12 RrrilraL.......araegltaselae 32
                R+++ ++L         +e++ a e  +
  KIR60657.1 20 RLGMTALLastpgleVVGEAADADEAVR 47
                7777777755555554444444444444 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.5e-05
                 HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHH.HHH CS
      HTH_20  13 rrilraLaraegltaselaerldlskntlsyHL.rvL 48 
                 r++l++   a+gl+   +a+rl ls++t+++HL +vL
  KIR60657.1 163 REVLDLV--AQGLSNLVIARRLTLSPKTVRNHLsNVL 197
                 6788888..************************7776 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   2.9e-05     0.043       3      33 ..     164     193 ..     163     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.9e-05
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvyrwl 33 
                 ++l l+a+G+s    iA++l ls++tv+++l
  KIR60657.1 164 EVLDLVAQGLS-NLVIARRLTLSPKTVRNHL 193
                 6899******8.****************987 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.1e-05     0.031       4      41 ..     164     201 ..     161     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.1e-05
      HTH_40   4 etlelleeglsieeIAkerglkesTIegHLaelieege 41 
                 e l+l+ +gls   IA++  l+++T+ +HL + + + +
  KIR60657.1 164 EVLDLVAQGLSNLVIARRLTLSPKTVRNHLSNVLGKLQ 201
                 678999************************99887755 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.3e-05     0.049       6      39 ..     163     194 ..     158     196 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.3e-05
      HTH_24   6 rkILelLqknprisqreLAerlglSpstvnrrlk 39 
                 r++L l+ +  ++s+  +A+rl lSp tv+ +l 
  KIR60657.1 163 REVLDLVAQ--GLSNLVIARRLTLSPKTVRNHLS 194
                 555555555..9*******************996 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.07     1e+02       1      10 [.     158     167 ..     158     172 .. 0.90
   2 ?    7.8   0.0    0.0019       2.9      28      51 ..     177     200 ..     171     201 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.07
      HTH_10   1 LTdkqlevlk 10 
                 LTd+++evl 
  KIR60657.1 158 LTDREREVLD 167
                 9*******96 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0019
      HTH_10  28 eLAkelGIskstlsehLrkaeskl 51 
                  +A +l +s+ t+ +hL+++  kl
  KIR60657.1 177 VIARRLTLSPKTVRNHLSNVLGKL 200
                 599*****************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1616.79
//
Query:       KIR60658.1  [L=309]
Description: F420-dependent oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-56  191.6   5.1    1.4e-53  182.4   2.4    2.0  2  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.4   2.4   7.9e-58   1.4e-53      14     244 ..       8     251 ..       1     259 [. 0.93
   2 !   10.6   0.1   1.5e-05      0.27     284     311 ..     254     281 ..     252     284 .. 0.89

  Alignments for each domain:
  == domain 1  score: 182.4 bits;  conditional E-value: 7.9e-58
  Bac_luciferase  14 algaasaslrylvelaraaEelGfdavwvaehhggpgga......ldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhlsgGRfg 102
                     ++++++ s+++l+++ar aE++G+ a++ ++h++  g+        da+t+la la  T+rirlgt  t ++ r P  lA ++a +d++sgGR++
      KIR60658.1   8 EPQQGA-SYDQLLAVARCAEDAGYGAFFRSDHYLKMGSVsgdpgpTDAWTTLAGLARDTSRIRLGTLMTAATFRFPGPLAITVAQVDQMSGGRVE 101
                     334455.9*************************976666******************************************************** PP

  Bac_luciferase 103 lglgtggpaveerrfGv...dhderyarlrEfvevlrrlwrg...eevdfeGeffsvkgalllprpgqgpiP.vyvaaas.paglelaarhadgl 189
                     lg+g+g++a+e+ ++G+   +  er +rl+E + v+ +lw++   e+ df+G+++ v+g   lp+p+q+p+P +++++ +  ++ +laar+ad +
      KIR60658.1 102 LGIGAGWFAEEHSAYGIpfpPLGERFDRLEEQLAVITGLWETpagETFDFAGRYYPVQGSPALPKPVQQPRPpILLGGKGpKRTPRLAARYADEF 196
                     *******************99*******************66774677**********************666*******88899********** PP

  Bac_luciferase 190 llageppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraearal 244
                      l   + ee a+++er+ra+ ae grdpa +    +l ++++++e+e+r++a+a+
      KIR60658.1 197 NLPFVSIEETAAQFERVRAACAEIGRDPAGMNWSNALVLCCGRDEAEVRRRAEAI 251
                     ***************************************************9876 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 1.5e-05
  Bac_luciferase 284 pdelvaatalvGtpeqvaerlaayaeag 311
                     +++ +++++l+Gtp++v++r+ +yae+g
      KIR60658.1 254 EPAELRENGLAGTPAEVVDRIGRYAETG 281
                     56778999******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2063.73
//
Query:       KIR60659.1  [L=541]
Description: hypothetical protein TK50_22460 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-06   25.1   0.0    2.3e-05   23.8   0.0    1.6  2  Hydrolase_4   Serine aminopeptidase, S33
     0.0018   17.7   0.0     0.0029   17.1   0.0    1.2  1  DUF3530       Protein of unknown function (DUF3530)
  ------ inclusion threshold ------
       0.07   12.9   0.0       0.11   12.3   0.0    1.2  1  Palm_thioest  Palmitoyl protein thioesterase


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.53   3.2e+03     155     195 ..     147     188 ..     120     190 .. 0.76
   2 !   23.8   0.0   3.8e-09   2.3e-05      40     118 ..     296     379 ..     287     409 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.53
  Hydrolase_4 155 vaayeadplvhgkitvrl.llelldamkrleeraakitlPll 195
                  ++a   dp+++g +++rl +++ll++++ +++ a ++++P +
   KIR60659.1 147 QRAAMVDPWWRGLPSIRLvGWSLLNLVALTVAGAVAWSVPSW 188
                  556667888888888886247888888888888888888865 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 3.8e-09
  Hydrolase_4  40 rGhGrse..gkrghvpsfddyvdDlaafvekvkeehpel..plfllGhSmGGliallyllrypd.kvaglilsaPalkikaklk 118
                  rG G  +     g  + + ++ d ++ + ++v + h+++  ++ l+G+S G+l+a +yl+++p+  v++l +++P+++    + 
   KIR60659.1 296 RGLGPDGepRPYGPTDTTISMADSVRLLADQVDRLHRQTgrKVALVGESEGALVARTYLAQRPHpAVDALAMFSPLIGAGRAYY 379
                  66666664333344444455556666677888866666666******************665553788*********9887663 PP

>> DUF3530  Protein of unknown function (DUF3530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.9e-07    0.0029     183     231 ..     322     370 ..     303     377 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.9e-07
     DUF3530 183 rlqaaiaflnqrgaenivllghgtgAywaarylaekksakvdaLvlvda 231
                  l   ++ l  ++ ++++l+g+ +gA  a +yla++  ++vdaL + ++
  KIR60659.1 322 LLADQVDRLHRQTGRKVALVGESEGALVARTYLAQRPHPAVDALAMFSP 370
                 5667799999999*******************************99776 PP

>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.8e-05      0.11      44     100 ..     316     368 ..     307     403 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.8e-05
  Palm_thioest  44 kasffgnlndqveavckklelangfhaiGfSQGglflRaliercddkknvrnlislg 100
                   +a ++  l dqv+   ++  + +++ ++G S G+l++R ++ + ++   v+  + + 
    KIR60659.1 316 MADSVRLLADQVDRLHRQ--TGRKVALVGESEGALVARTYLAQRPHPA-VDA-LAMF 368
                   566777788899888777..5799*****************9986554.554.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 3387.61
//
Query:       KIR60660.1  [L=146]
Description: hypothetical protein TK50_22465 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0076   16.0   0.0       0.01   15.6   0.0    1.1  1  MlaC      MlaC protein
  ------ inclusion threshold ------
       0.08   13.2   0.0       0.16   12.3   0.0    1.5  1  DUF4878   Domain of unknown function (DUF4878)


Domain annotation for each model (and alignments):
>> MlaC  MlaC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.2e-06      0.01      83     130 ..      93     140 ..      82     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-06
                 S-EEEE----S-TTTSSEEEEEEEEEETTSEEEEEEEEEEEETTEEEE CS
        MlaC  83 gqkievkperpspkgkkdvvVkteiiqaggkpikvdYrlrkkggewki 130
                 g +i+   ++ s+++++++vV +ei+ +g +  +v+++l+k++g+wk+
  KIR60660.1  93 GFRITDLAVKRSSDAPTQYVVTAEITYPGLPSREVQFHLKKQDGGWKV 140
                 555555677888888999**********8799***************8 PP

>> DUF4878  Domain of unknown function (DUF4878)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.8e-05      0.16      14     112 .]      50     141 ..      39     141 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.8e-05
     DUF4878  14 knFleavkeGdvedaikyltestreedalaeklkgkfkelkakaekkkekqgnlkeveikdeeesgdtAvvtVkvtlkdGkekkeeieliKedgkWkvs 112
                 +++l a+  Gd+  a ++l+ +++  +  a+       ++ a +      +  +++  +k + +   + vvt ++t++       +++l K dg Wkv+
  KIR60660.1  50 EAYLGAAVRGDNGTAYDLLCAAEQRGRSRADW------DATA-SAIVDPTGFRITDLAVKRSSDAPTQYVVTAEITYPGLPSREVQFHLKKQDGGWKVC 141
                 66777777888888888888777776666666......2222.44555556677799999999998899*****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1090.57
//
Query:       KIR60661.1  [L=142]
Description: hypothetical protein TK50_22470 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0081   15.8   3.6     0.0081   15.8   3.6    2.3  2  TSP_3      Thrombospondin type 3 repeat
  ------ inclusion threshold ------
      0.017   15.2   0.4      0.031   14.4   0.4    1.4  1  CagY_I     CagY type 1 repeat
      0.046   13.9  15.5      0.051   13.7   1.8    2.8  3  FG-GAP     FG-GAP repeat
      0.046   14.3  14.6        1.3    9.7   1.4    3.3  4  VCBS       Repeat domain in Vibrio, Colwellia, Bradyrhizobium
       0.11   12.0   9.3        2.2    7.9   0.3    3.2  3  EF-hand_5  EF hand
        4.4    6.2  12.8        5.2    6.0  12.8    1.1  1  DEC-1_N    DEC-1 protein, N-terminal region
        5.4    6.8   8.4         24    4.8   0.2    3.1  3  EF-hand_1  EF hand


Domain annotation for each model (and alignments):
>> TSP_3  Thrombospondin type 3 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   3.6   3.1e-06    0.0081       1      24 [.      97     120 ..      97     121 .. 0.95
   2 ?    1.6   0.3     0.086   2.2e+02      15      23 ..     124     132 ..     123     134 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.1e-06
       TSP_3   1 tDaDsDgvGDaCdkDfDnDgvqdd 24 
                 tD D+Dg+ D+ + D D+Dgv+d 
  KIR60661.1  97 TDLDGDGIADVVQFDLDGDGVPDI 120
                 799*******************96 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.086
       TSP_3  15 DfDnDgvqd 23 
                 D D Dg+ d
  KIR60661.1 124 DSDRDGRLD 132
                 667777766 PP

>> CagY_I  CagY type 1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.4   1.2e-05     0.031      31      55 ..      80     104 ..      79     115 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
      CagY_I  31 eskessdhhldnPtetqtnfdGdks 55 
                 es     hhld  te  t++dGd  
  KIR60661.1  80 ESHSIVTHHLDGSTEVVTDLDGDGI 104
                 6667778****************64 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.8     2e-05     0.051       6      19 ..      95     108 ..      91     108 .. 0.84
   2 ?    9.2   1.6   0.00052       1.3       9      18 ..     111     120 ..     110     121 .. 0.95
   3 ?   -3.4   0.2       4.7   1.2e+04      11      17 ..     126     132 ..     126     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2e-05
                 EEESTSSSSS-EEE CS
      FG-GAP   6 avgDvNGDGyaDLa 19 
                  v+D++GDG aD++
  KIR60661.1  95 VVTDLDGDGIADVV 108
                 689*********97 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00052
                 STSSSSS-EE CS
      FG-GAP   9 DvNGDGyaDL 18 
                 D++GDG++D+
  KIR60661.1 111 DLDGDGVPDI 120
                 9********8 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.7
                 SSSSS-E CS
      FG-GAP  11 NGDGyaD 17 
                 + DG  D
  KIR60661.1 126 DRDGRLD 132
                 7899987 PP

>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.4    0.0005       1.3      47      60 ..      95     108 ..      78     109 .. 0.80
   2 ?    8.5   1.2    0.0012         3      48      59 ..     109     120 ..     107     122 .. 0.82
   3 ?    5.1   0.2     0.013        34      49      61 .]     123     135 ..     120     135 .. 0.78
   4 ?    4.4   0.3     0.023        59      50      61 .]     124     135 ..     124     140 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0005
        VCBS  47 avgDlDgDGdlDll 60 
                 +v DlDgDG +D++
  KIR60661.1  95 VVTDLDGDGIADVV 108
                 57899999999986 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0012
        VCBS  48 vgDlDgDGdlDl 59 
                  +DlDgDG +D+
  KIR60661.1 109 QFDLDGDGVPDI 120
                 579999999998 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.013
        VCBS  49 gDlDgDGdlDllv 61 
                  D D+DG+lD +v
  KIR60661.1 123 LDSDRDGRLDTVV 135
                 6889999999776 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.023
        VCBS  50 DlDgDGdlDllv 61 
                 D D+DG+lD +v
  KIR60661.1 124 DSDRDGRLDTVV 135
                 445555555443 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.7      0.05   1.3e+02       9      14 ..      98     103 ..      98     104 .. 0.92
   2 ?    7.9   0.3   0.00086       2.2       7      14 ..     109     116 ..     108     117 .. 0.91
   3 ?    6.2   0.1    0.0029       7.5       8      17 ..     123     132 ..     121     133 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.05
                 -SS-SS CS
   EF-hand_5   9 DlNgDG 14 
                 Dl+gDG
  KIR60661.1  98 DLDGDG 103
                 9***** PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00086
                 HH-SS-SS CS
   EF-hand_5   7 aiDlNgDG 14 
                 ++Dl+gDG
  KIR60661.1 109 QFDLDGDG 116
                 8******* PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0029
                 H-SS-SSCE- CS
   EF-hand_5   8 iDlNgDGkIs 17 
                 +D ++DG+++
  KIR60661.1 123 LDSDRDGRLD 132
                 7*******98 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  12.8     0.002       5.2      97     145 ..      26      79 ..       6     101 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.002
     DEC-1_N  97 Gaalqsllplqsldg...llGaa.apapalaaapppapapvp.ddpapapaapq 145
                 G   q+  pl++ ++   ++Ga  ap p+++ ap pap pvp  +p pap  p 
  KIR60661.1  26 GPDPQNDAPLGAYPQagpVFGAYpAPSPTPGPAPRPAPGPVPaPSPGPAPRPPV 79 
                 444444444433332111566435888888888889999998445788887773 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.4      0.15   3.7e+02      10      15 ..      98     103 ..      96     106 .. 0.88
   2 ?    4.7   0.2    0.0098        25       8      15 ..     109     116 ..     108     117 .. 0.88
   3 ?    4.8   0.2    0.0093        24       9      18 ..     123     132 ..     120     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.15
                 TTTSSS CS
   EF-hand_1  10 DkDgdG 15 
                 D DgdG
  KIR60661.1  98 DLDGDG 103
                 9****9 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0098
                 HHTTTSSS CS
   EF-hand_1   8 efDkDgdG 15 
                  fD DgdG
  KIR60661.1 109 QFDLDGDG 116
                 59****** PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0093
                 HTTTSSSEEE CS
   EF-hand_1   9 fDkDgdGkId 18 
                 +D D+dG++d
  KIR60661.1 123 LDSDRDGRLD 132
                 8*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1051.01
//
Query:       KIR60662.1  [L=380]
Description: peptidase M50 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-14   54.0   0.5    3.4e-07   30.6   0.0    2.8  3  CBS            CBS domain
    9.5e-12   44.7   8.6    2.1e-08   33.8   0.3    2.5  2  Peptidase_M50  Peptidase family M50


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.53   4.8e+03      24      45 ..      64      85 ..      52      85 .. 0.67
   2 !   30.6   0.0   3.8e-11   3.4e-07       1      51 [.     248     298 ..     248     302 .. 0.92
   3 !   20.6   0.0   5.2e-08   0.00047       8      55 ..     320     366 ..     312     368 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.53
                HHHHHTSSEEEEE.ETTT.BEEEE CS
         CBS 24 lmrekgvsrlPVV.dedg.klvGi 45
                l+  ++vs+  VV   +g ++ Gi
  KIR60662.1 64 LL-AHEVSHA-VVaKRNGlEVSGI 85
                33.7889999.8856666666665 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 3.8e-11
                 HHHHSBSSCEEEETTSBHHHHHHHHH.HHTSSEEEEEETTTBEEEEEEHHHH CS
         CBS   1 Vgdimtrdvvtvppdttleealelmr.ekgvsrlPVVdedgklvGivtlrDl 51 
                 V+d+mt+++ t++ d+t+++ ++ +   +++s+lP + ++g++vG+vtl  +
  KIR60662.1 248 VADVMTPQPQTASGDMTVADFVDHYLfAYRHSALPLT-DEGRPVGLVTLDRV 298
                 89**********************8778889******.6*********9876 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 5.2e-08
                 SCEEEETTSBHHHHHHHHHHHTS..SEEEEEETTTBEEEEEEHHHHHHHH CS
         CBS   8 dvvtvppdttleealelmrekgv..srlPVVdedgklvGivtlrDllral 55 
                 ++v ++pd+ l ++l ++   ++  +r +VV   g+lvGiv+ +D+ ra+
  KIR60662.1 320 QLVLADPDEQLTDLLPRLS--ECadGRALVV-AGGRLVGIVSPSDISRAV 366
                 568899************5..33335666**.689***********9986 PP

>> Peptidase_M50  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   3.9   5.5e-06     0.049       3     105 ..      57     124 ..      55     131 .. 0.87
   2 !   33.8   0.3   2.3e-12   2.1e-08     190     246 ..     142     196 ..     124     202 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.5e-06
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50   3 illlgilvvvHElGHflvAklcgvkveefsigfGpkllsfkkgeteYaiallpLGGyVkmageepeeelseeeakaflkkspwqrllivlAGplan 98 
                    ++++++ ++ HE+ H++vAk++g++v                      i+l+ +GG+ +++ge                ++p ++l+i+  Gpl+ 
     KIR60662.1  57 AVVFFLGLLAHEVSHAVVAKRNGLEVSG--------------------ITLWLFGGVAELRGEA---------------RDPGAELRIAGVGPLVS 117
                    688888999*****************88....................8889999999999988...............66889999999999999 PP

                    XXXXXXX CS
                    xxxxxxx RF
  Peptidase_M50  99 filailv 105
                    +i+++++
     KIR60662.1 118 LIIGVVF 124
                    9998876 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 2.3e-12
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 190 sflqllalisvnLgilNLlPipvLDGghllfalleairrkplserkeevanlvglal 246
                      l++la i++ L+++N lP  +LDGg+ll+a++++ +    ++r+  va ++g +l
     KIR60662.1 142 GALAWLAGINILLAVFNVLPAAPLDGGRLLRAAVWKAT--GDRTRASVVAARAGWVL 196
                    6799*****************************99999..55556666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3019.47
//
Query:       KIR60663.1  [L=103]
Description: hypothetical protein TK50_22495 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 701.84
//
Query:       KIR60664.1  [L=154]
Description: hypothetical protein TK50_22500 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   14.9   0.1      0.036   14.3   0.1    1.3  1  SH3_3     Bacterial SH3 domain


Domain annotation for each model (and alignments):
>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1     2e-06     0.036      35      55 .]     114     139 ..      95     139 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2e-06
       SH3_3  35 e.....WykvrtddgteGwvssgyls 55 
                 +     Wy v  +dg++G+ s  y++
  KIR60664.1 114 GvasniWYEVVLHDGRTGYLSEVYVE 139
                 145566***************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1227.10
//
Query:       KIR60665.1  [L=66]
Description: hypothetical protein TK50_22505 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-23   81.2   0.3    4.6e-23   81.0   0.3    1.0  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.3   2.6e-27   4.6e-23       1      54 []       7      60 ..       7      60 .. 0.89

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 2.6e-27
      DUF397  1 atWrKSsySgggggnCVEvaalpda......vavRDSkdpdgpvLtftpaewaaFlagvk 54
                a+WrKS++S++gg nCVEv     a      v++RDSkd +gpvLtftp++waaF++ vk
  KIR60665.1  7 AVWRKSTRSNNGG-NCVEV-----AdnlpgvVGLRDSKDVAGPVLTFTPSSWAAFIEDVK 60
                58********887.7****.....444455689************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       159  (0.00886831); expected 358.6 (0.02)
Passed bias filter:                      148  (0.00825478); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 475.07
//
Query:       KIR60666.1  [L=301]
Description: hypothetical protein TK50_22520 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-12   46.4   0.0      1e-11   45.5   0.0    1.4  1  YkuD      L,D-transpeptidase catalytic domain


Domain annotation for each model (and alignments):
>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   5.6e-16     1e-11       3     146 .]     170     290 ..     168     290 .. 0.76

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 5.6e-16
                 EEEEETTTTEEEEEEETTEEEEEEE-BEBTTS.TTSE---EEEEECEEEEEEE..EEG.GGGT--TTSTT.EEEEEEEECCCTTCECCCCEEE-STTS- CS
        YkuD   3 yivvdlaeqrllvlyengklvlsfpvsvGgkkegdreTPlGtfrikskvrnptwnvpp.siarkeiypklrkdpeyldkknskvalgkvkfvfpngsgi 100
                  ivv +  +rl ++y++g   +s+ vs+G   ++++eTPlG+ ++        +++pp + +++   + l++ p+  d             +   g +i
  KIR60666.1 170 QIVVERRPHRL-TWYRDGHAKRSWQVSLG---MRGQETPLGRTFVL------GRTPPPePVYGGVDVFALGAIPDDPD----------AIPPGLAGAHI 248
                 58899888777.999**************...88************......33333303344444444444444433..........2235677888* PP

                 EEEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEEEE CS
        YkuD 101 yiHgtgapdlfergkgarrShGCirlseedakelyelvlvgtpvvi 146
                 ++H  +++d++    g++ ++GCirl+ +  ++l + v +g+ v +
  KIR60666.1 249 GLH--AWQDDDTL--GEDVTNGCIRLTRSGQRQLLDEVRPGSVVLV 290
                 ***..99988666..7999**********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2184.30
//
Query:       KIR60667.1  [L=482]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-18   65.6   0.0    1.5e-17   64.2   0.0    1.6  1  Alpha-amylase    Alpha amylase, catalytic domain
    2.4e-12   47.2   0.1    5.4e-12   46.0   0.1    1.6  1  Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
  ------ inclusion threshold ------
       0.21   11.1   0.0       0.34   10.4   0.0    1.3  1  EAL              EAL domain


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   2.4e-21   1.5e-17      43     291 ..      92     308 ..      90     333 .. 0.74

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 2.4e-21
                    CE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSGGGCCC-E......ESS-STTC-TTTTCSCEECTTTTCEEESSS- CS
  Alpha-amylase  43 kidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgepkrdyyiwkegkeekeppnnwkslfdgsaweydekaqeyylhlfl 138
                     i+ + Gt ++++ +++ +h+ g+kvi+D+VvNH+s + +  +      g++++ y       ++++   + +  ++g ++ + + + e   + +l
     KIR60667.1  92 RIESRKGTRAQFQSMVNTCHAAGVKVIVDAVVNHMSGQDAGGTGWA---GSSYGHYDY-PGIYQTQDFHHCGR--NGGDDIANYNDRYE-VQNCEL 180
                    577778******************************9999733332...334444444.11223334444433..44444444333333.346778 PP

                    TTS-BB-TTTCCCCCCCCCCCCCCCTTT-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHTCCGTT-EEEEE-TT-SCCCHCCCC-CGG-SIC CS
  Alpha-amylase 139 kklpdLnteneevrkelkdvvkfwlekgidGfRlDvvkhvskvealesngeflheftqalnetvasrkevmtvgEvssdasedlrvyttearlele 234
                     +l dL te++ vr ++   ++ +l  g+dGfRlD+ kh++           +  ++  l       + +++v Ev  +a e  ++  ++++ +++
     KIR60667.1 181 VNLSDLATESDYVRSKIAGYLNDLLSLGVDGFRLDASKHMPA--------ADIAAIKGRLS------RSAYIVQEVIYGAGEPIQPTEYTGNGDVH 262
                    89****************************************........67777777777......568***********999998888888888 PP

                    ECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-CCCTTCEEES--TTS-- CS
  Alpha-amylase 235 mvldfphldvaqkakikeqlksisakklkellkkwlkaleeaaeeavtflgnHDqeR 291
                           ++ +++ +   +  s +++ lk+  + w + l+  + +a++f++nHD++R
     KIR60667.1 263 ------EFRYGKDLARVFR--SEKLAYLKNFGEGWGH-LP--SGSAAVFVDNHDTQR 308
                    ......4445555553333..4447777776666654.55..479999*******99 PP

>> Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.1     9e-16   5.4e-12       5      94 ..     397     476 ..     394     478 .. 0.88

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 9e-16
                      EETTSSEEEEEECTTTEEEEEEE-SSSSEEE.CEEESSSSSEEEEETTCTTSGCCTTT-SSTSS-EEEECTTCBSEEEEEEESTTEEEEEE CS
  Alpha-amylase_C   5 kdeenkviaFeRgdgekllvvfNfhpsnsrq.dyrvgvpaagkyrdvlntdaeeyggsglgntgkvvtvdddgransltltlpprsalvlk 94 
                       d++n+ iaF+R +  k+++ +N ++ +++   y +g+p ag+y+dv+++d +   g   +++g+v+tvd +g   ++t ++p+  a++++
       KIR60667.1 397 YDNGNNHIAFSRAG--KGYLTMNDEDGAVTGrSYYTGLP-AGRYCDVIHGDFTG--G---TCSGPVITVDANG---WFTANVPAHDAIAIH 476
                      468*********99..9******7776665459******.********999874..5...5************...************998 PP

>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   5.7e-05      0.34     182     216 ..      91     125 ..      84     131 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.7e-05
                 TTTTTSCHHHHHHHHCHHHHCCCT-EEEE-S--SH CS
         EAL 182 adleedeeaqalvkalialakelgikvvaegVete 216
                 +++e+ + ++a +++++++++++g+kv+++ V ++
  KIR60667.1  91 YRIESRKGTRAQFQSMVNTCHAAGVKVIVDAVVNH 125
                 578899999*********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3248.85
//
Query:       KIR60668.1  [L=612]
Description: hypothetical protein TK50_22530 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4137.51
//
Query:       KIR60669.1  [L=488]
Description: NADH dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-29  101.3   0.0    1.3e-28   99.8   0.0    1.7  2  Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subu
    9.2e-15   54.5   0.0    2.1e-14   53.3   0.0    1.6  1  NADH_4Fe-4S   NADH-ubiquinone oxidoreductase-F iron-sulfur bi
    8.8e-11   42.4   0.0    2.5e-10   41.0   0.0    1.8  1  Fer4_15       4Fe-4S single cluster domain
    0.00063   19.6   0.0     0.0025   17.6   0.1    2.1  2  SLBB          SLBB domain
      0.002   18.6   0.0     0.0056   17.2   0.0    1.8  1  Fer4_13       4Fe-4S single cluster domain of Ferredoxin I


Domain annotation for each model (and alignments):
>> Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.0   3.6e-32   1.3e-28       4     150 ..      54     210 ..      51     212 .. 0.91
   2 ?   -1.6   0.0      0.63   2.3e+03      99     132 ..     295     336 ..     278     353 .. 0.70

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 3.6e-32
  Complex1_51K   4 agivGrGGagfPthvKlkakakkkk.....kylivNaaEcEPgltkDrllmreepheileGlkiaaealgaekgvigvrdekpeaiealekalaeak 95 
                    ++ G GGagfP++ Kl+a+ ++ +      +++vNa+E+EP+++kD+ l+ + ph il+G++++a+al a+++vigv d++     +l++al+e++
    KIR60669.1  54 IQLKGKGGAGFPFARKLRAVLESCErqdasAMVVVNATEGEPASWKDKVLLTRAPHLILDGAALVAYALDADEIVIGVADDDV-GRPSLTEALQERR 149
                   6899**************999854478889*************************************************9965.5678999999997 PP

  Complex1_51K  96 aaglldievvklagkYpaGeekaLiesltgr.evprgkpp..advgv.....vvnNveTlaav 150
                       +  ++v+++ ++++Ge  aL++ ++g   +p+g     +d+gv     +++N+eT+a++
    KIR60669.1 150 M--PVPTSIVTVPHRFISGEGGALVNGINGLpHIPPGTKKrsSDSGVgglptLLSNAETYAQL 210
                   4..499*************************99999965556******************987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.63
  Complex1_51K  99 l........ldievvklagkYpaGeekaLiesltgrevprgk 132
                   l          i v   +++ p Ge+ ++++ l g+   +++
    KIR60669.1 295 LtavggtlgAGIIVPLARDTCPLGEAAQVVRYLAGESAGQCG 336
                   244444555667788888999999999999999999665554 PP

>> NADH_4Fe-4S  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0     6e-18   2.1e-14       3      83 ..     320     397 ..     319     399 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 6e-18
                  HHHHHHHHHHH--S--HHHHIIIIHHHHHHHHHTBT---HHHHHHHHHHHHHHSS--SSTHHHHHHHHHHHHHHHHHHHHH CS
  NADH_4Fe-4S   3 arrllefyaaesCGkCtpCreGtkrllelleriaagegteedldlleelaetikgtslCalgdsaanpvlsalrkFreefe 83 
                  a+++++++a es+G+C+pC+ G++ l+++++  ++g++    ++ ++  a  +kg+++C ++d++a++ lsa++ F ++++
   KIR60669.1 320 AAQVVRYLAGESAGQCGPCKMGLPDLARAVDLAVSGSAP---VEIVRAAAGDVKGRGACSHPDGTARFALSAMEVFADDLK 397
                  6889**********************************9...9***********************************987 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   6.9e-14   2.5e-10       2      65 ..     427     483 ..     426     484 .. 0.94

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 6.9e-14
     Fer4_15   2 vvDrdaCigcglCvaeapevfeldedglasvllddgeiaegevpddeeeaaqeAaraCPvdAIr 65 
                 ++D+++C+g+glC+ ++p++++ld++g++ +         ++vp +++e a +A+++CP+ A+r
  KIR60669.1 427 TLDWSRCDGHGLCAHVVPDFIRLDGNGYPAFP-------TTPVPTWLREGAMKAVKVCPELALR 483
                 79***************************777.......47*******************9987 PP

>> SLBB  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.1   7.5e+03      38      52 ..      99     114 ..      93     115 .. 0.78
   2 !   17.6   0.1     7e-07    0.0025       2      29 ..     235     262 ..     234     274 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.1
                 .......-E.EEE-SS CS
        SLBB  38 lksvnLarl.avipgG 52 
                  ++v L+r+  +i++G
  KIR60669.1  99 KDKVLLTRApHLILDG 114
                 4688899999999998 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 7e-07
                 EEEESSBSS-EEEEEETT-BHHHHHHTT CS
        SLBB   2 VtVtGeVkrPgnyevpigttlsdlieqa 29 
                  tVtG+ krP ++e   gt+l+d++e++
  KIR60669.1 235 LTVTGAAKRPAVVECAAGTPLRDILELC 262
                 59************************87 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.6e-06    0.0056       2      55 ..     429     481 ..     428     484 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.6e-06
     Fer4_13   2 DrdtCiacgaCvelaPdvFeeddeggasvvaeqptseeekadaeeAadaCPves 55 
                 D ++C ++g+C+++ Pd+ + d + g+ +++  p+++ +++ a++A++ CP  +
  KIR60669.1 429 DWSRCDGHGLCAHVVPDFIRLDGN-GYPAFPTTPVPTWLREGAMKAVKVCPELA 481
                 5579**************999998.89999*********************866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 3162.59
//
Query:       KIR60670.1  [L=428]
Description: seryl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-27   94.4   0.0    1.1e-26   94.0   0.0    1.2  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    1.3e-14   54.3   6.9    1.9e-14   53.8   6.9    1.3  1  Seryl_tRNA_N    Seryl-tRNA synthetase N-terminal domain
  ------ inclusion threshold ------
      0.037   13.4   5.5      0.055   12.8   5.5    1.2  1  DUF4407         Domain of unknown function (DUF4407)
       0.08   13.5   0.9       0.15   12.6   0.9    1.4  1  ING             Inhibitor of growth proteins N-terminal histo
       0.17   12.3   0.5       0.32   11.3   0.5    1.4  1  YlqD            YlqD protein
       0.24   11.9   4.0       0.46   11.0   4.0    1.5  1  Spectrin        Spectrin repeat
       0.31   11.4   3.6       0.89    9.9   3.6    1.8  1  DUF3813         Protein of unknown function (DUF3813)
        1.6    8.9   4.4        8.8    6.5   4.4    2.1  1  Suppressor_APC  Adenomatous polyposis coli tumour suppressor 
        2.1    8.9   6.1        4.1    7.9   6.1    1.5  1  FlgN            FlgN protein
        4.9    7.7   7.7         17    5.9   5.7    2.7  2  DinB_2          DinB superfamily


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.0   5.9e-30   1.1e-26       9     178 ..     226     401 ..     217     402 .. 0.93

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 5.9e-30
                   EEEEE-SSSHHHHHHHHHHHEEEBGGSSEEEEEEEEEEBTTTS....TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.SCEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   9 reyiLkPtneetfvelirdevlrskrLPlklyqiqtkyRdEks....dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlglefrai 101
                   r   L Pt+e+++  +++de+l    LPlk ++++++yR+E+     d rG +R+++F++ + + f +++++d  l +++  ++ +  rlgl+ +  
    KIR60670.1 226 RGQFLLPTAETAILGAYQDEILDTATLPLKRFAYTPCYRREAAgshsDERGTVRGHQFNKVEIFQFTLPEQADAALGQMVAHVEGLVARLGLHHQTS 322
                   556799**************999999****************77798999*******************************************8888 PP

                   EEEGTTSCBTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTS.SEEEEEEEEEE.EEHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxxxxxxxx RF
  tRNA-synt_2b 102 ielmsaksadykdkkefeavsesltkgieigtiqklgtrlserlgatvldenn.reksvimicaa.igveRllsaileq 178
                   +++ ++ sa+ k+++++e++++s +k+ e+++++  g+++++r  +++ +  + + ++v++++ + ++++Rl  aileq
    KIR60670.1 323 LLSAGDASASMKKTLDIEVWMPSTGKYKEVSSVSWAGDYQARRAAIRYREAGGkQTRFVHTLNGSaLATSRLFPAILEQ 401
                   888*********************************************7777657799*****999************8 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   6.9   1.1e-17   1.9e-14       1     108 []       1     109 [.       1     109 [. 0.92

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 1.1e-17
                   ---HHHHHH-HHHHHHHHCCCT...CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N   1 MLDiklirenpeavkeklkkRg...edkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkele 94 
                   MLD+ lir++ eav+ +l+kR    e +  +de+  ld++rr+l++e+++ +++r++ +++ + ak+++  a e +a  +e  ++l++le +l+e++
    KIR60670.1   1 MLDMELIRKDREAVATALAKRLdpaEVNRALDEIQRLDQERRALITEIDAERQRRKAEARAYAAAKRAG-TAPESVAPEAE-RKQLAELESQLDEVQ 95 
                   *********************9888888999*************************************9.55555555444.5789*********** PP

                   HHHHHHHCTS---- CS
  Seryl_tRNA_N  95 aeleklllaiPNip 108
                   a+l + ++++PN+p
    KIR60670.1  96 ARLRERMSELPNLP 109
                   ************98 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   5.5   3.1e-05     0.055     127     214 ..      22     104 ..       2     123 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.1e-05
     DUF4407 127 laaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaa 214
                 l     ae++++ ++i++l++e +a+ +++da+r+  ++e+     ++  g+a +  a ++ ++ql++++ +l+e++a+   ++r+++
  KIR60670.1  22 L---DPAEVNRALDEIQRLDQERRALITEIDAERQRRKAEARAYAAAKRAGTAPESVAPEAERKQLAELESQLDEVQAR--LRERMSE 104
                 2...344555555555555555555555555555555555544333332334444445555778999999999999999..5555444 PP

>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.9   8.6e-05      0.15      13      77 ..      24     102 ..      22     104 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.6e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..............TS..S-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
         ING  13 PlelqrnltelreiDakvqellkeidskiekfl..............kngslqknekeeelsriqeelkeaqelldeKi 77 
                 P+e++r l+e++ +D++ + l+ eid + ++                + +s +++ ++++l++++++l+e+q  l+e +
  KIR60670.1  24 PAEVNRALDEIQRLDQERRALITEIDAERQRRKaearayaaakragtAPESVAPEAERKQLAELESQLDEVQARLRERM 102
                 89***********************7776666667888999999998778899999999999********999888866 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5   0.00018      0.32      28      96 ..      26     115 ..      12     124 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
        YlqD  28 qieqldkelqqLefqakrlikeikkqsaq.....................qieeiqeqvekekserlekkkqllqqleqvqkLelgsevk 96 
                 +++++  e+q+L+++ + li+ei  + ++                     + e+ ++q+++ +s++ e +++l+++++++ +L+ +  v 
  KIR60670.1  26 EVNRALDEIQRLDQERRALITEIDAERQRrkaearayaaakragtapesvAPEAERKQLAELESQLDEVQARLRERMSELPNLPADDVVP 115
                 567777889999999999999987766667777888888888888888888888889999999999999999999999999999888776 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.0   0.00026      0.46      25     103 ..      23     105 ..      10     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00026
                 CCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHH.HHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  25 ssedlgkdleevqallkkhkaleaelaaqqervkaln...elaekl.ldeghsaseeieerleelnerWeeLkelaaerkqkL 103
                    ++ + l+e+q+l ++ +al  e++a++ r ka     + a++  ++ +  a+e+ +++l+el+++ +e+++++ er  +L
  KIR60670.1  23 DPAEVNRALDEIQRLDQERRALITEIDAERQRRKAEArayAAAKRAgTAPESVAPEAERKQLAELESQLDEVQARLRERMSEL 105
                 55677889********************777777666678777777788889999************************9888 PP

>> DUF3813  Protein of unknown function (DUF3813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.6   0.00049      0.89       7      62 ..      39      93 ..      34      94 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00049
     DUF3813  7 qeArsaVeeakeaaaaseeeqqeaiqrAKnAlssAYanssdaEreqLrqlqeqLdn 62
                qe r+ ++e+ + ++  +  + +a ++AK A  +  + + +aEr+qL +l+ qLd+
  KIR60670.1 39 QERRALITEIDAERQRRK-AEARAYAAAKRAGTAPESVAPEAERKQLAELESQLDE 93
                666677777776666654.445556999999999999999**************96 PP

>> Suppressor_APC  Adenomatous polyposis coli tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.4    0.0049       8.8       5      30 ..      31      56 ..      28     105 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0049
  Suppressor_APC  5 lkrlkeLeqekdlLlqgLeaveraRd 30
                    l  ++ L+qe+ +L+ +++a+ + R+
      KIR60670.1 31 LDEIQRLDQERRALITEIDAERQRRK 56
                    67899***************888775 PP

>> FlgN  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   6.1    0.0023       4.1      49     106 ..      29     101 ..       5     108 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHHHHHHHHHHTT--..............SCHHHHHHHHCT...........TCCHHHHHHHHHHHHHHHHHHHH CS
        FlgN  49 ellekleqleqkrakllaelgls..............aeeatlsellak...........eedeelkelwqelkelleelkel 106
                   l+++++l+q+r++l++e+  +              +          +           +e+++l+el ++l+e+ ++l+e+
  KIR60670.1  29 RALDEIQRLDQERRALITEIDAErqrrkaearayaaaK----------RagtapesvapeAERKQLAELESQLDEVQARLRER 101
                 45566666666666666666666554432222222222..........13433333444688888888888888888888876 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.7    0.0094        17      54     100 ..      70     116 ..       5     129 .. 0.79
   2 ?   -0.9   0.0       1.3   2.3e+03      66      91 ..     292     317 ..     239     333 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0094
      DinB_2  54 eaprpgldpltppsaaealaylaevrarllallealtdadldrplta 100
                 +ap++  ++++   +ae+  +l+ev+arl++ +++l++ ++d+ ++ 
  KIR60670.1  70 TAPESVAPEAERKQLAELESQLDEVQARLRERMSELPNLPADDVVPG 116
                 33344455555699************************998887765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.3
      DinB_2  66 psaaealaylaevrarllallealtd 91 
                 + +++a a+l +++a++  l+++l  
  KIR60670.1 292 TLPEQADAALGQMVAHVEGLVARLGL 317
                 56788889999999999888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1237  (0.0689944); expected 358.6 (0.02)
Passed bias filter:                      852  (0.0475208); expected 358.6 (0.02)
Passed Vit filter:                       127  (0.0070835); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 2891.96
//
Query:       KIR60671.1  [L=394]
Description: saccharopine dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-13   49.6   0.0    7.6e-13   48.9   0.0    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    9.5e-06   25.6   0.4      2e-05   24.6   0.1    1.7  2  NAD_binding_10   NAD(P)H-binding
     0.0097   15.8   0.0      0.023   14.6   0.0    1.6  1  KR               KR domain
  ------ inclusion threshold ------
      0.043   13.4   0.0      0.071   12.7   0.0    1.3  1  NmrA             NmrA-like family
       0.15   12.4   1.1        1.7    9.0   0.1    2.8  3  Lambda_tail_I    Bacteriophage lambda tail assembly protein I


Domain annotation for each model (and alignments):
>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   2.1e-16   7.6e-13       1     126 [.       9     136 ..       9     140 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 2.1e-16
                      EEEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.....TTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGG..GHHHHH CS
  Sacchrp_dh_NADP   1 vliiGa.GsvGqavaellarhfdvdaeitvadrskeklealaaka.....lgvrfeaialdaenyeavLaallkegdlvvnlsppi..ssldvl 86 
                      v+++Ga G++G  +ae+larh +   ++++a+r+ +kl+a+ + +     +   +   + d+ ++e+ L ++ +++ +v + ++p+   +++++
       KIR60671.1   9 VVLFGAtGFTGGLTAEYLARHAPPGLRWALAGRNPAKLAAVRDRLagvdpALAGLPLLTADVTDPES-LRRVAADARVVASTVGPYvhHGEPLV 101
                      799*******************9755****************99999988778889999********.******************88889*** PP

                      HHHHHHT-EEEESS-BCGCCSCHCCSHHHHHTHHHHHHCT CS
  Sacchrp_dh_NADP  87 kaCietgvhyvdtsiskeertnyalreavlklkekakeag 126
                      +aC+++g++y+d+       ++ ++  ++ +++++a + g
       KIR60671.1 102 AACARAGTDYLDITG-----EPEFVDTMYVRHHAEAVRTG 136
                      ************444.....34556666667776666655 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   5.6e-09     2e-05       1      86 [.      13     105 ..      13     114 .. 0.80
   2 ?   -3.0   0.0       1.6   5.6e+03      11      42 ..     158     189 ..     156     206 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 5.6e-09
                     TTTSHHHHHHHHHHHHC-..T-EEEEEETTHHHCHHHH........CTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHHHHHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellarg..ghevtalvRnpeklaele........aeeglevvegdvtdvedlaealkgadaVvsalggggkdeegaknivdaa 85 
                     GAtG +G l ++ l+++   g++  +  Rnp+kla+++        a +gl ++++dvtd+e+l+++ ++a +V s++g+        + +v+a+
      KIR60671.1  13 GATGFTGGLTAEYLARHAppGLRWALAGRNPAKLAAVRdrlagvdpALAGLPLLTADVTDPESLRRVAADARVVASTVGPYVH---HGEPLVAAC 104
                     9***********9999999***************9877333333223358889*************************86433...344444444 PP

                     H CS
  NAD_binding_10  86 k 86 
                      
      KIR60671.1 105 A 105
                     4 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.6
                     HHHHHHC-T-EEEEEETTHHHCHHHHCTTTCE CS
  NAD_binding_10  11 vkellargghevtalvRnpeklaeleaeegle 42 
                     v++l a+g ++v  +vR   ++++   +++l+
      KIR60671.1 158 VTQLPADGPVTVDGFVRAGGRFSAGTYHSALT 189
                     67788888888888888777776554555554 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.4e-06     0.023       4      81 ..      10      89 ..       8     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.4e-06
                EEETTTSHHHHHHHHHHHHHH..S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS- CS
          KR  4 litGGlGgLGlelarwlaekg..arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeepp 81
                ++ G++G  G  +a+ la+++    + +l +R++a+ ++ ++++a +    a   ++ aDv+d+++++++ ++++  +++
  KIR60671.1 10 VLFGATGFTGGLTAEYLARHAppGLRWALAGRNPAKLAAVRDRLAGVDPALAGLPLLTADVTDPESLRRVAADARVVAST 89
                678*****************96566779******************************************9998766555 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     2e-05     0.071       1      94 [.       9     109 ..       9     112 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2e-05
                 EEESSTTSHHHHHHHHHHHH...HT-EEEEEES-S.......-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GGS-HHHHHHHHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallk...aghkvralvRdt.......kselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfyskeiedgkklvdAa 89 
                 ++ +GaTG  G+  +++l++    g +     R++       ++ +    + aG  l+ +d+ d esl+++  ++ vv s++g     ++ g  lv+A 
  KIR60671.1   9 VVLFGATGFTGGLTAEYLARhapPGLRWALAGRNPaklaavrDRLAGVDPALAGLPLLTADVTDPESLRRVAADARVVASTVG---PYVHHGEPLVAAC 104
                 5679999999999999999987767777777788866555322222223345788899************************9...89*********** PP

                 HHHS- CS
        NmrA  90 keaGv 94 
                 ++aG 
  KIR60671.1 105 ARAGT 109
                 ***95 PP

>> Lambda_tail_I  Bacteriophage lambda tail assembly protein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00047       1.7       7      36 ..     114     146 ..     109     165 .. 0.87
   2 ?    0.4   0.0      0.23   8.4e+02      21      42 ..     179     200 ..     165     209 .. 0.82
   3 ?   -2.8   0.0       2.3   8.2e+03      46      59 ..     312     325 ..     301     334 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00047
  Lambda_tail_I   7 ltgsle...rrfgvdvveavktleeairalssq 36 
                    +tg +e     +++++ eav t++ ++ a++ +
     KIR60671.1 114 ITGEPEfvdTMYVRHHAEAVRTGARLVHACGFD 146
                    788888888899******************865 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.23
  Lambda_tail_I  21 eavktleeairalssqldafke 42 
                     + +t+ +a+ als + +a ++
     KIR60671.1 179 FSAGTYHSALTALSRAAEAGRA 200
                    5779*********998877655 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.3
  Lambda_tail_I  46 rskfavrvagvdVg 59 
                    +s+f vr  g + g
     KIR60671.1 312 KSWFRVRFVGSGGG 325
                    56776666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2758.91
//
Query:       KIR60672.1  [L=135]
Description: hypothetical protein TK50_22590 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 963.56
//
Query:       KIR60673.1  [L=120]
Description: anti-anti-sigma factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-10   39.2   0.0    9.1e-10   38.8   0.0    1.1  1  STAS_2    STAS domain
    1.5e-08   34.3   0.0    1.8e-08   34.0   0.0    1.0  1  STAS      STAS domain


Domain annotation for each model (and alignments):
>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0     1e-13   9.1e-10       5      79 ..      21      97 ..      20      98 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 1e-13
      STAS_2  5 Geldldtaaelreqllealaag..aevvvDlsgvervDsaalalLlalartarargrrlvlrglppalrrlldlyGl 79
                Ge+d dta e+re+ +e+l+ g  a++++ ++ v+++Ds ++++ +a   ta+ +g +lv++ +++ ++r l ++Gl
  KIR60673.1 21 GEIDVDTAYEVREAIAEVLTKGrpARIELNMRLVTFIDSVGISAMVAGFQTAEVSGVKLVVTEPSRFVHRQLWVTGL 97
                9******************777779***********************************************99998 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0     2e-12   1.8e-08       9     105 ..      13     101 ..       9     108 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 2e-12
                 TEEEEEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHHHTTCGGCC CS
        STAS   9 gililrldgpidfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevreklektgffdev 105
                 g++ +  +g+id  +a +++e + +++ +++        +  + l++  v+fiDs+G++a++  ++  +  gv++v+  ++  v++ l  tg++  +
  KIR60673.1  13 GVIEIAPRGEIDVDTAYEVREAIAEVLTKGR--------PARIELNMRLVTFIDSVGISAMVAGFQTAEVSGVKLVVTEPSRFVHRQLWVTGLLGLF 101
                 66667889**********************5........9***********************************************9999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 871.13
//
Query:       KIR60674.1  [L=149]
Description: hypothetical protein TK50_22600 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0018   18.5   0.2     0.0022   18.3   0.2    1.1  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra


Domain annotation for each model (and alignments):
>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.2   1.2e-07    0.0022       4     129 ..       7     129 ..       4     147 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.2e-07
                      EEEEEEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSE.STSSS.......TTTEEEEECCCSSEEEEEEEEEETTTTEEEEEEE.SSS-TSEE CS
  Polyketide_cyc2   4 vtvsvviaappekVwalvsdfenwprWhpevarveleg.gggpa.......rgvegtvrvggrgtvreelvevdpegrllsyrivkpvpvanyv 89 
                      ++ sv+  ++ +++ al+sd++   + hp ++rv++ + ++g++       + ++g vr+g   t +  ++ v++   +++     ++p+++++
       KIR60674.1   7 FQYSVQARCSRAEAVALLSDPARQTELHPLITRVRRLSpRPGALasyaitdQLAAGPVRFGV--TYQADVLVVTD-DEIVTVAR--QRPATTVR 95 
                      678899999*************************8887445554676665555556666655..47777777776.45555555..49999999 PP

                      EEEEEEECCET.EEEEEEEEEEEE--TT--HHHHHHHHHHH CS
  Polyketide_cyc2  90 atwtvtpdggg.trvtwtgefdagplggpfekpaaakavkg 129
                         ++ ++++g  rv  ++++ a     p  +p++a a++ 
       KIR60674.1  96 NHTRLRDEPDGlVRVDVEITLVA-----P--TPLFAYAFRQ 129
                      99999999999755444443332.....1..2334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 1157.54
//
Query:       KIR60675.1  [L=356]
Description: hypothetical protein TK50_22605 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.47    8.6   3.6        2.7    6.1   1.3    2.0  2  HOOK      HOOK protein


Domain annotation for each model (and alignments):
>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0    0.0015        28     354     393 ..      56      95 ..      48     113 .. 0.75
   2 ?    6.1   1.3   0.00015       2.7     475     532 ..     144     201 ..     137     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0015
        HOOK 354 alrsqlelykkqvqelhkklseeskkadklefelkkleek 393
                 alr+qle+  k   e+++ l+   k++++l  +lk++e+ 
  KIR60675.1  56 ALRAQLEAASKGYLEAKTALDRSVKRQQQLGGQLKTVEAE 95 
                 6777777777777777777777777777777777776655 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.00015
        HOOK 475 seeekltelqelledanrrkneLetenrlanqrileLeaqveelqkalqeqgskaeds 532
                 +e++ l el +  ++a ++++ L+ e r +++++  + ++ e+ ++al+  ++ka +s
  KIR60675.1 144 NEDRALRELLTTRDEATKTRQALDGEIREQRKQVALMGKRKEQAERALTVANNKASSS 201
                 6678899999******************************9*****999999998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2456.86
//
Query:       KIR60676.1  [L=705]
Description: ATP-dependent DNA helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-14   52.9   0.0    2.1e-13   50.8   0.0    2.0  1  AAA_19           AAA domain
    3.5e-11   43.2   0.0    0.00023   20.8   0.0    2.1  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
      3e-08   33.4   0.1    9.8e-08   31.7   0.1    2.0  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    5.5e-07   29.2   0.0     0.0075   15.7   0.0    2.2  2  PhoH             PhoH-like protein
    1.9e-06   27.8   1.0      0.021   14.5   0.0    2.6  2  AAA_30           AAA domain
    3.9e-06   26.9   0.0    8.9e-05   22.4   0.0    2.6  3  AAA_11           AAA domain
      8e-06   25.8   0.0    0.00049   19.9   0.0    2.8  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0021   17.4   0.8      0.011   15.0   0.2    2.1  2  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0068   15.8   0.0      0.089   12.1   0.0    2.2  2  UvrD_C           UvrD-like helicase C-terminal domain
     0.0093   15.8   0.0      0.053   13.3   0.0    2.2  3  DEAD             DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.016   14.8   0.7       0.11   12.0   0.0    2.6  3  AAA_25           AAA domain
      0.026   14.9   1.9       0.05   14.0   0.0    2.5  2  AAA_16           AAA ATPase domain
      0.062   13.6   0.3         12    6.2   0.1    2.5  2  AAA_22           AAA domain
       0.13   11.3   0.0       0.23   10.5   0.0    1.3  1  T2SSE            Type II/IV secretion system protein


Domain annotation for each model (and alignments):
>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   1.6e-16   2.1e-13       1     144 [.     187     537 ..     187     539 .. 0.92

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 1.6e-16
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelggvkp..eeillvaftgrAakelrerlaalgaeatTiHrlal.................... 77 
                 q ea++  +++v +v +GpGtGKT v  h+ a+l+   +       il+v +    ++ ++  l +lg+e+ T+ +l+                     
  KIR60676.1 187 QDEAIRSPASGVTIVSGGPGTGKTAVALHRAAYLLYSDRSRYagGGILVVGPSAVFVEYIASVLPSLGEETATLRSLGSmfpgmgatrtdppevaavkg 285
                 7899999999**********************99877655443489*******************************999******************* PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  KIR60676.1 286 slrmrrvleravrdavpggpgelrllyrgellrldrreldgirdralgrgarrnesrragfdgvfaalwaqarrlgigrlpeqrafedeiaerpefref 384
                 *************************************************************************************************** PP

      AAA_19  78 ..........................................................................................ldfddllte 86 
                                                                                                               d++  
  KIR60676.1 385 lkawwprlhprhvlgwlarpdrlrryaagvlsraevgllveayraldvegltiadvalldeldallgkplqpkrarrdpfqlaggvrelsT-HADRQRA 482
                 *************************************************************************999999999999988532.2233323 PP

      AAA_19  87 alelleeaeeekklqeeellivDEfqdvdelqyrLlkallgekkklllvGDpdQliyv 144
                 a e+   +e+ ++ ++ ++++vDE+qdv+++q+r++ +   + ++ ++vGDp Q+   
  KIR60676.1 483 AREA--ARERPEDYRDFAHVVVDEAQDVSPMQWRMIGRRG-RLASWTVVGDPAQTAWT 537
                 3344..556677775556********************99.55669********9765 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.8e-07   0.00023       3      42 ..     185     225 ..     183     237 .. 0.84
   2 !   20.4   0.0   2.4e-07   0.00031     256     295 ..     496     534 ..     454     537 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.8e-07
                    HHHHHHHHS.-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS CS
  UvrD-helicase   3 peqreaias.lggpilveAsAGsGKTfvlaerilrlikeee 42 
                    +eq eai+s  +g ++v+ ++G+GKT+v  +r ++l+   +
     KIR60676.1 185 REQDEAIRSpASGVTIVSGGPGTGKTAVALHRAAYLLYSDR 225
                    79*******99999**********************97764 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 2.4e-07
                    HSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG- CS
  UvrD-helicase 256 rykeiliDEyQDTnkiQyrilkllasgheelfmvGDpkQs 295
                     + ++ +DE+QD +++Q+r++ +  +     ++vGDp Q 
     KIR60676.1 496 DFAHVVVDEAQDVSPMQWRMIGRRGRLA-SWTVVGDPAQT 534
                    589******************9876665.699*****995 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   7.7e-11   9.8e-08       4      52 .]     654     701 ..     652     701 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 7.7e-11
    UvrD_C_2   4 altihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRAreklilv 52 
                 ++t  +a+G e++ V++++p +  a+ g    r LY+a++RA+++l+ v
  KIR60676.1 654 VVTSLQAKGMEYDGVVLVAPGEIRADPG-SGVRTLYVALSRATQRLVTV 701
                 688899***************7776644.47***************976 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00015      0.19       9      46 ..     184     223 ..     179     230 .. 0.81
   2 !   15.7   0.0   5.9e-06    0.0075     121     161 ..     498     537 ..     495     568 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                 HHHHHHHHH..H-SEEEEE--TTSSTTHHHHHHHHHHHHT CS
        PhoH   9 Qkeylealk..kndivfaiGpaGtGKtylavalavealkk 46 
                 Q+e  ea++  ++ ++++ G  GtGKt +a+  a+ +l +
  KIR60676.1 184 QREQDEAIRspASGVTIVSGGPGTGKTAVALHRAAYLLYS 223
                 66666777766788******************99988765 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 5.9e-06
                 EEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE-------- CS
        PhoH 121 afvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlp 161
                 a v++DEAQ+++++q +m+  R G+ +   v+Gd++q+   
  KIR60676.1 498 AHVVVDEAQDVSPMQWRMIGRR-GRLASWTVVGDPAQTAWT 537
                 679***************9755.999999999*****8765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.6e-05     0.021       3      61 ..     184     245 ..     182     292 .. 0.65
   2 !   11.2   0.2   0.00018      0.23      87     171 ..     495     581 ..     464     597 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.6e-05
      AAA_30   3 naeQaaavealltsgdrvavltGpAGtGKttalkal.reaweaag.....grviglAptgkaAkv 61 
                 + eQ +a+++ + sg  v+++ G++GtGKt +  +  + ++ ++      g ++++ p++   + 
  KIR60676.1 184 QREQDEAIRSPA-SG--VTIVSGGPGTGKTAVALHRaAYLLYSDRsryagGGILVVGPSAVFVEY 245
                 678999998665.44..89***********86433202222222124444566666666655555 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00018
      AAA_30  87 epgtllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlvea....agigtaeLtevvRqkeseeraaalalre 171
                 ++   ++vDEa  v+  q++ + ++ +   a+  +vGD++Q a  +  + l+   +a    ++ ++ eLt+++R + + ++ a  ++r+
  KIR60676.1 495 RDFAHVVVDEAQDVSPMQWRMIGRRGRL--ASWTVVGDPAQTAWTGDPEELTRARDAalgrRRRHQFELTTNYRNSAEIFAVAEAEIRR 581
                 444789******************9988..99999*******999988877777555555578899********987777777777775 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.86   1.1e+03      67      97 ..      18      49 ..      12      75 .. 0.80
   2 !   22.4   0.0   6.9e-08   8.9e-05       3      73 ..     184     249 ..     182     287 .. 0.86
   3 ?    0.4   0.0      0.36   4.6e+02     209     253 ..     489     533 ..     482     534 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.86
      AAA_11 67 vDellerllr.glldsegekykpkivRvgnee 97
                 D + +rl++ + + ++ ek + +++Rvgn  
  KIR60676.1 18 LDRVYARLAElRHFAAQAEKDGYRLARVGNFG 49
                689999**999999***************966 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 6.9e-08
      AAA_11   3 ndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDeller 73 
                  ++q eai+s+ s    t+++G PGtgKT + ++  ++ll    s++++ a+  iLv +pS + v  +++ 
  KIR60676.1 184 QREQDEAIRSPASGV--TIVSGGPGTGKTAVALHRAAYLLY---SDRSRYAGGGILVVGPSAVFVEYIASV 249
                 578999999998776..89********************43...6889*************9988877665 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.36
      AAA_11 209 klleklakkfdvviIDEAaqavEpstliPl..rlgakkvvLvGDpkQ 253
                 ++ e+++ +f  v++DEA q v p  +  +  r + +    vGDp Q
  KIR60676.1 489 ERPEDYR-DFAHVVVDEA-QDVSPMQWRMIgrRGRLASWTVVGDPAQ 533
                 5555664.99*******8.4444444444421333456666666666 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.08     1e+02       1      15 [.     199     213 ..     199     226 .. 0.83
   2 ?   -2.1   0.0         2   2.5e+03      90     126 ..     446     481 ..     440     488 .. 0.82
   3 !   19.9   0.0   3.8e-07   0.00049      61     231 ..     495     699 ..     467     702 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.08
  Viral_helicase1   1 ivvhGvpGcGKStli 15 
                      ++v+G pG GK+ + 
       KIR60676.1 199 TIVSGGPGTGKTAVA 213
                      68**********865 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2
  Viral_helicase1  90 lvilfGDplQipfhsrnasfllahlpsslshrvgrrt 126
                      l +l+G plQ p   r++ f+la  + +ls +  r++
       KIR60676.1 446 LDALLGKPLQ-PKRARRDPFQLAGGVRELSTHADRQR 481
                      57899*****.88999999999999999977776665 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 3.8e-07
  Viral_helicase1  61 tkgkililDEylllhaGyilllaalskaklvilfGDplQipfhsrnasfllahlpssl...shrvgrrttyllpsdvaeilsakvgtevevers 151
                       ++  +++DE++ + + +  ++ ++ ++    ++GDp+Q       ++  +a+         h ++ +t y++ +  +++ +a    + + + +
       KIR60676.1 495 RDFAHVVVDEAQDVSPMQWRMIGRRGRLASWTVVGDPAQTAWTGDPEELTRARDAALGrrrRHQFELTTNYRNSAEIFAVAEAE-IRRLYPDLA 587
                      5678899*******9999999999999************88887766666655444447779999999**************99.667777777 PP

  Viral_helicase1 152 gelkvetepkgq.e.kvlvyltftqalkealgvr.................................evttvhevqGltfdkVtlvllketdle 210
                       +   ++ + g+ + + +v+ ++ +a++ a   +                                 +v t+ ++ G ++d V+lv   e   +
       KIR60676.1 588 LPR--AVRSTGVaPvELTVPAAELAAATVAAVGDllgevegtvgvitpvprrdevagwlagraaprlQVVTSLQAKGMEYDGVVLVAPGEIRAD 679
                      777..55555553444444444433333322222366699999999******************************************999988 PP

  Viral_helicase1 211 lisesrenllvAlTRhrkslv 231
                        s +  +l+vAl+R++++lv
       KIR60676.1 680 PGS-GVRTLYVALSRATQRLV 699
                      666.5999**********997 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   8.8e-06     0.011       3      28 ..     198     223 ..     196     243 .. 0.80
   2 ?    0.3   0.0      0.26   3.3e+02      79      98 ..     487     506 ..     462     550 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.8e-06
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeledd 28 
                 v +V+G++GtGKt v+l+ +a l  +
  KIR60676.1 198 VTIVSGGPGTGKTAVALHRAAYLLYS 223
                 789***************99988333 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.26
     DUF2075  79 kaeekkeepkedvvivDEAh 98 
                  +e+ ++ +++  v+vDEA+
  KIR60676.1 487 ARERPEDYRDFAHVVVDEAQ 506
                 456667778889999****9 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.17   2.2e+02       2      27 ..     560     585 ..     559     604 .. 0.86
   2 !   12.1   0.0     7e-05     0.089     285     343 ..     650     699 ..     645     702 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.17
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C   2 vLekNyRStksLlkaankflenilnr 27 
                  L++NyR +++++ +a++ +++ +++
  KIR60676.1 560 ELTTNYRNSAEIFAVAEAEIRRLYPD 585
                 699*************9988887765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 7e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 285 ekipiiTiHqAKGlEFdvVflagleegtfPsyrskkekrleEEkRlfYVaiTRAkkrLf 343
                 ++ +++T  qAKG E+d V+l+       P  +  +        R++YVa++RA +rL+
  KIR60676.1 650 PRLQVVTSLQAKGMEYDGVVLVA------PGEIRADP---GSGVRTLYVALSRATQRLV 699
                 678899999*************9......86665553...4578*************96 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   4.1e-05     0.053       4      78 ..     187     262 ..     182     283 .. 0.83
   2 ?   -1.5   0.0       1.5   1.9e+03     120     136 ..     495     511 ..     479     519 .. 0.80
   3 ?   -3.9   0.0       7.7   9.8e+03      54      89 ..     604     638 ..     602     642 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.1e-05
                 HHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.TTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
        DEAD   4 QaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.kgktgpkalivePtreLaeqtlnnlkkfkky.idlrv 78 
                 Q+eai      g  +v++  G+GKT+++l  +   +y++  +  g  +l+v P+   +e +++ l +++++ ++lr 
  KIR60676.1 187 QDEAIRSPA-SGVTIVSGGPGTGKTAVALHRAAYLLYSDrSRYAGGGILVVGPSAVFVEYIASVLPSLGEEtATLRS 262
                 666776666.45899**********************998799999*************999999999887333554 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.5
                 TTEEEEEEETHHHHHHT CS
                 xxxxxxxxxxxxxxxxx RF
        DEAD 120 sqvrflVlDEadrlldq 136
                 +++  +V+DEa+ ++ +
  KIR60676.1 495 RDFAHVVVDEAQDVSPM 511
                 566789*****998776 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 7.7
                 ESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  54 ePtreLaeqtlnnlkkfkkyidlrvlliiggvaard 89 
                 +P  eLa  t+  +  ++ +++  ++ +i+ v++rd
  KIR60676.1 604 VPAAELAAATVAAVGDLLGEVEG-TVGVITPVPRRD 638
                 79999999999999888887663.334556666666 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.8e-05      0.11      31      56 ..     194     219 ..     178     238 .. 0.89
   2 ?   -3.3   0.0       4.5   5.7e+03      17      39 ..     402     424 ..     395     424 .. 0.86
   3 ?   -0.8   0.0      0.76   9.7e+02     126     154 ..     480     508 ..     448     512 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.8e-05
      AAA_25  31 pagelallaGapgtGKttlaldlala 56 
                 pa +++++ G pgtGKt++al+ a+ 
  KIR60676.1 194 PASGVTIVSGGPGTGKTAVALHRAAY 219
                 899******************98875 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.5
      AAA_25  17 apppprrwlvkgllpagelalla 39 
                 a+p ++r +  g+l + e++ll+
  KIR60676.1 402 ARPDRLRRYAAGVLSRAEVGLLV 424
                 78999999999***999999985 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.76
      AAA_25 126 ltadvdaleaaieevegvrlvviDplsra 154
                   a+ +a +++ e++ + ++vv+D  + +
  KIR60676.1 480 QRAAREAARERPEDYRDFAHVVVDEAQDV 508
                 2344555667777778899****988876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.9e-05      0.05      18      88 ..     190     256 ..     175     310 .. 0.60
   2 ?   -1.8   0.1       2.7   3.5e+03     117     117 ..     473     473 ..     371     522 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.9e-05
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekd.......ggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 ++rs+ ++++++sG +G+GK++++ + + +l  +       ggi++ g             +++++ + ++l  l++e
  KIR60676.1 190 AIRSPASGVTIVSGGPGTGKTAVALHRAAYLLYSdrsryagGGILVVGPSAV---------FVEYI-A-SVLPSLGEE 256
                 67788889****************5555455544344444323333333333.........45555.4.555555555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.7
      AAA_16 117 s 117
                  
  KIR60676.1 473 L 473
                 2 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0094        12       6      22 ..     197     213 ..     194     246 .. 0.90
   2 ?    4.8   0.0     0.024        31      70     110 ..     456     514 ..     423     533 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0094
      AAA_22   6 gilvvtGesGtGKTtll 22 
                 g+++v G +GtGKT ++
  KIR60676.1 197 GVTIVSGGPGTGKTAVA 213
                 789***********997 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.024
      AAA_22  70 a..............erlsseell.ealeqalrarav....ielliiDEaqhlrseeale 110
                                ++ls+++ + +a ++a+r+r       + +++DEaq + s+ +++
  KIR60676.1 456 PkrarrdpfqlaggvRELSTHADRqRAAREAARERPEdyrdFAHVVVDEAQDV-SPMQWR 514
                 45555666666666666777777744444444444448888999*******99.755554 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00018      0.23     113     146 ..     182     213 ..     168     226 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00018
       T2SSE 113 alkekiaevlrkavrerglilvsGgTgsGKttll 146
                 + + +++e++r++  + g+ +vsGg g+GKt ++
  KIR60676.1 182 TIQREQDEAIRSP--ASGVTIVSGGPGTGKTAVA 213
                 55678999*****..99**************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 4316.63
//
Query:       KIR60677.1  [L=307]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-27   96.7  16.8    3.5e-27   96.4  16.8    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    1.7e-21   76.6   1.4    1.1e-20   73.9   1.4    1.9  1  Hydrolase_4    Serine aminopeptidase, S33
    1.8e-16   60.6   0.1      4e-13   49.6   0.4    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
    1.2e-07   32.1   0.1    3.4e-07   30.6   0.1    1.6  2  Thioesterase   Thioesterase domain
    0.00025   20.8   0.0    0.00034   20.3   0.0    1.3  1  Esterase       Putative esterase
    0.00082   19.3   0.1      0.032   14.1   0.1    2.2  2  Ser_hydrolase  Serine hydrolase
      0.001   19.2   1.5       0.67   10.1   0.0    3.1  4  Abhydrolase_4  TAP-like protein
  ------ inclusion threshold ------
      0.014   14.9   0.9       0.26   10.7   0.5    2.5  3  Peptidase_S9   Prolyl oligopeptidase family
      0.034   13.9   0.1       0.06   13.1   0.1    1.4  1  Abhydrolase_5  Alpha/beta hydrolase family
       0.06   12.0   0.0      0.094   11.4   0.0    1.4  1  Ndr            Ndr family
        0.1   12.4   0.0       0.12   12.2   0.0    1.1  1  Palm_thioest   Palmitoyl protein thioesterase
       0.11   12.0   0.0        6.6    6.2   0.0    2.2  2  DLH            Dienelactone hydrolase family
       0.11   12.2   0.3       0.17   11.6   0.3    1.2  1  PGAP1          PGAP1-like protein
       0.11   11.8   0.0       0.25   10.7   0.1    1.4  2  DUF915         Alpha/beta hydrolase of unknown function (DUF9
       0.18   10.9   0.0       0.23   10.6   0.0    1.1  1  LCAT           Lecithin:cholesterol acyltransferase


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4  16.8   2.9e-30   3.5e-27       2     220 .]      30     288 ..      29     288 .. 0.68

  Alignments for each domain:
  == domain 1  score: 96.4 bits;  conditional E-value: 2.9e-30
                    EEE--GC.....GC..HHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHHC....HHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC..... CS
  Abhydrolase_6   2 lllHGagssassWl..vapLaallaagvhvlapDlpGhGrsdpppldledl....adlaalldelaagggpvvlvGHSlGGalalaaapla..... 86 
                    +llHG  ++++sW+   a+L+++++++v+v+++D++GhGrs +++l  + l    +dlaa+ld++a  +gpvvlvGHS+GG+  +++a+       
     KIR60677.1  30 VLLHGWTLDGRSWHrqLAELRERFGDRVRVVTYDARGHGRSGCMALRTATLaqlgDDLAAVLDAVA-PAGPVVLVGHSMGGMTIMEYAHRHpghfa 124
                    9************65688999999999************998888666554222455577777777.88999**************6666699988 PP

                    ...EE.EEES-.........................----TTTS----TTHHHHHHTT-C.CCCHCCH.....S-HSCCCCHHHCCCCHCHCCCGH CS
  Abhydrolase_6  87 .lvvg.vlldp............pp...........talpagllaaalelllallallrl.lawlsre.....plprlfladedadaawrarlarl 151
                     + +g v++++             p           t+++ + +  a+++++all++lr+  +w+  +      + rl  +     a  ra+l+  
     KIR60677.1 125 aRTAGlVFVSTtaeghthtvyglSPriarlirlaetTGAGVLARCGAWRPPRALLRALRPsIRWMLFGdrcdpTDIRLVTS-----AVARATLRSI 215
                    866778999995554544443331133333333332333333355555555555554444456663222333222223333.....5566666666 PP

                    HHHCCHHC....HTTCCHHTT-TTGCEEECTT-CHHHHCHHCCCH..STTEEETCE...SSS-HHHHSHHHHHHH CS
  Abhydrolase_6 152 aallaglg....llpaaawadlpvpllvlggeDplvprllerlla..qagarlpvvlpgaGHlphleepdevaea 220
                      ++a+ g    l ++aa+a+lp++ lv g++D+l p+  ++  a  ++  +l +v pgaGH++++e+p++v++a
     KIR60677.1 216 GGFRASIGaqhrLDTLAALAHLPAAALV-GDRDRLTPPPCAESIAaaLPATEL-TVCPGAGHMLMMERPEQVNAA 288
                    65555444433366799*********77.*****9998888888878899999.******************975 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   1.4   9.3e-24   1.1e-20      32     238 ..      57     281 ..      24     282 .. 0.78

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 9.3e-24
  Hydrolase_4  32 favyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypd....kvaglilsaPalkikakl........ 117
                  + v+++D+rGhGrs+    + + + ++ dDlaa++++v+   p  p++l+GhSmGG++ ++y++r+p     + agl+++++  + ++++        
   KIR60677.1  57 VRVVTYDARGHGRSGCMALRTATLAQLGDDLAAVLDAVA---PAGPVVLVGHSMGGMTIMEYAHRHPGhfaaRTAGLVFVSTTAEGHTHTvyglspri 151
                  689***********9999999**************9999...999**********************977767789**********999888877644 PP

  Hydrolase_4 118 .kappllkl....llkllgkllpklqv..........snnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrleeraakitlPllllhGe 200
                   +   l +l     + +l+++  + ++           + +++ +   dp  ++++ +        +++ ++  + a+ rl + aa ++lP   l G+
   KIR60677.1 152 aR---LIRLaettGAGVLARCGAWRPPrallralrpsIRWMLFGD-RCDPTDIRLVTSAVARATLRSIGGFRASIGAQHRLDTLAALAHLPAAALVGD 245
                  42...3332222333333333333333666676644311122222.23677778777777778888899999999999******************** PP

  Hydrolase_4 201 aDkvvdpeasrelyerlgskdktlklypglyHellnEp 238
                  +D++++p  ++ ++++l++   +l++ pg+ H+l++E+
   KIR60677.1 246 RDRLTPPPCAESIAAALPA--TELTVCPGAGHMLMMER 281
                  ******************5..99************996 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.4   3.3e-16     4e-13       4     100 ..      30     125 ..      29     145 .. 0.87
   2 !    8.8   0.0   0.00094       1.1     212     257 .]     235     282 ..     185     282 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 3.3e-16
                    EEE-STTTCGGGGTTGHHHHHHHHT...TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEE.EEEETHHHHHHHHHHHHHG CS
  Abhydrolase_1   4 vilhGlpgssdvwaerglapaLakd...gfdvillDlrGvgySspapacinddygtasvaddldrildalgddklt.lvGhSmGGmialayaaeyp 95 
                    v+lhG++  + +w++      L ++   + +v+++D rG+g+S         + ++a + ddl ++lda     ++ lvGhSmGGm+ ++ya ++p
     KIR60677.1  30 VLLHGWTLDGRSWHR--QLAELRERfgdRVRVVTYDARGHGRSGCMAL---RTATLAQLGDDLAAVLDAVAPAGPVvLVGHSMGGMTIMEYAHRHP 120
                    89*************..9999*999******************77666...567999999*********97776666******************8 PP

                    GGEEE CS
  Abhydrolase_1  96 erVka 100
                     + +a
     KIR60677.1 121 GHFAA 125
                    77654 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00094
                    S..EEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 212 a..ptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlaflegp 257
                    a  p+  + g+ D+l+pp   e +a++lp  +l v ++agH++ +e+p
     KIR60677.1 235 AhlPAAALVGDRDRLTPPPCAESIAAALPATELTVCPGAGHMLMMERP 282
                    256889999**********************************99976 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.1   2.8e-10   3.4e-07      18      91 ..      48     125 ..      43     154 .. 0.76
   2 ?   -1.8   0.0       2.3   2.8e+03     170     223 ..     236     285 ..     203     290 .. 0.64

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 2.8e-10
                   HHHHHCTTCEEEEEEECSTTST.SHHHCT..TCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHC..T CS
  Thioesterase  18 slasklsdpvvevlavqlpgre.rdeppl..esieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesq..G 91 
                    l++++ d+ v+v+++ ++g++ ++  +l   ++++l + +a+ l ++ p gP++l+GhS+Gg+  +e A++      +
    KIR60677.1  48 ELRERFGDR-VRVVTYDARGHGrSGCMALrtATLAQLGDDLAAVLDAVAPAGPVVLVGHSMGGMTIMEYAHRHPGHfaA 125
                   577888887.9999999999996333333125789999********************************987666633 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.3
                   HHCEEEEEEGSS-CTCCCCCCCHCHCHCTCESCEEEEEESSHCCHHHSHHHHHH CS
  Thioesterase 170 klratlfngsddklkdldtlelaerweqktsgevsvhvlegdhfylledrleav 223
                    l+a+ ++g++d+l+       ae+ ++  +    +    ++h+ ++e r+e+v
    KIR60677.1 236 HLPAAALVGDRDRLTPPP---CAESIAAALPATELTVCPGAGHMLMME-RPEQV 285
                   566777777777777766...455466666666666666677777776.66665 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.8e-07   0.00034      98     144 ..      83     125 ..      34     174 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.8e-07
                 HHTHHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCEEE CS
    Esterase  98 ltqeLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFgsvs 144
                 l + L+ +lda  +  p   +++G+SmGG++ + +a +hp++F  ++
  KIR60677.1  83 LGDDLAAVLDAVAPAGPV--VLVGHSMGGMTIMEYAHRHPGHF--AA 125
                 555666666666666666..***********************..44 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   2.7e-05     0.032      38      91 ..      79     137 ..      29     153 .. 0.74
   2 ?    3.2   0.0     0.058        70     113     157 ..     235     280 ..     206     290 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.7e-05
                    -HHHHHHHHHHHHHC-..STTEEEEEETCHHHHHHHHHH...HTTSSSEEEEEEET--S CS
  Ser_hydrolase  38 dledWvaaleaaveaa..eekvvlvAHSlgclavlhaae...lqlakkvagalLVapad 91 
                    +l++  + l+a ++a+   ++vvlv HS+g ++++++a+    + a++ ag ++V+  +
     KIR60677.1  79 TLAQLGDDLAAVLDAVapAGPVVLVGHSMGGMTIMEYAHrhpGHFAARTAGLVFVSTTA 137
                    555555556666655511467*****************987778889999999998765 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.058
                    HCCHCEEEEETTBTTC-HHHHHHHHHHCT-.EEEEETT-TTSSGGG CS
  Ser_hydrolase 113 lpfpslvvaSenDpyvsfeeaeelaeawga.elvdlgeaGHinads 157
                    +++p++ +  + D + +   ae++a+a+ a el++ + aGH+ + +
     KIR60677.1 235 AHLPAAALVGDRDRLTPPPCAESIAAALPAtELTVCPGAGHMLMME 280
                    5677788888999*************9976379999*****98755 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0     0.008       9.6      33      76 ..      26      70 ..      10      84 .. 0.81
   2 ?   -0.9   0.0       1.5   1.8e+03      36      75 ..      99     142 ..      88     155 .. 0.59
   3 ?   -2.6   0.0       5.2   6.2e+03      14      46 ..     168     197 ..     159     210 .. 0.63
   4 !   10.1   0.0   0.00056      0.67      39      82 ..     241     284 ..     221     294 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.008
  Abhydrolase_4 33 gaapvLllqnerDpaTPyegakklakalgg.avlvtvegeGHgal 76
                   + + vLl + + D    +++ ++l++++g+  ++vt++  GHg +
     KIR60677.1 26 DVTAVLLHGWTLDGRSWHRQLAELRERFGDrVRVVTYDARGHGRS 70
                   337899999999999999999*********889*********975 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
  Abhydrolase_4  36 pvLllqnerDpaTPyegakklakalgg..a..vlvtvegeGHga 75 
                    pv l++     +T +e a +    +    a  v v+ + eGH+ 
     KIR60677.1  99 PVVLVGHSMGGMTIMEYAHRHPGHFAArtAglVFVSTTAEGHTH 142
                    56666666666666666666655555333344444444555553 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 5.2
  Abhydrolase_4  14 sCagwpvspqrprdestakgaapvLllqnerDp 46 
                     C +w  +++  r   +    ++ +l++ + Dp
     KIR60677.1 168 RCGAWRPPRALLRALRPS---IRWMLFGDRCDP 197
                    477774443333333223...677777777777 PP

  == domain 4  score: 10.1 bits;  conditional E-value: 0.00056
  Abhydrolase_4  39 llqnerDpaTPyegakklakalggavlvtvegeGHgalaagntC 82 
                     l + rD  TP+  a+++a al+  +l +  g+GH  + +  + 
     KIR60677.1 241 ALVGDRDRLTPPPCAESIAAALPATELTVCPGAGHMLMMERPEQ 284
                    566889*****************8888889999**988755444 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.3   1.5e+03     166     187 ..      46      68 ..      29      83 .. 0.69
   2 ?   10.7   0.5   0.00022      0.26      65     103 ..      99     137 ..      57     151 .. 0.79
   3 ?    1.5   0.0      0.14   1.7e+02     149     192 ..     242     281 ..     223     291 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.3
                   HHHHH.--S-SEEEEEETTS-SS CS
  Peptidase_S9 166 vaaLq.kkgknvlllifpdegHg 187
                   +a+L+ + g+ v+++++   gHg
    KIR60677.1  46 LAELReRFGDRVRVVTYDARGHG 68 
                   34455444555777777777775 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00022
                   GEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCC CS
  Peptidase_S9  65 rlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlr 103
                    +++ G+S GG++++  + ++p  F+a  a+  +v  ++
    KIR60677.1  99 PVVLVGHSMGGMTIMEYAHRHPGHFAARTAGLVFVSTTA 137
                   4689***********************999877777665 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.14
                   EEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSH CS
  Peptidase_S9 149 ihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkpr 192
                   ++G+ D  +pp  a+ ++aaL      ++l + p++gH + ++r
    KIR60677.1 242 LVGDRDRLTPPPCAESIAAALPA----TELTVCPGAGHMLMMER 281
                   68999999999999999999977....799999*****877665 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1     5e-05      0.06      37      87 ..      79     133 ..      65     145 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5e-05
  Abhydrolase_5  37 nlavlgknkaeeiikeapklekfvvgGhslGGvvasrfaaee.....ekiegvvfl 87 
                     la lg + a+ +   ap     v+ Ghs+GG+ + ++a+++      +  g+vf+
     KIR60677.1  79 TLAQLGDDLAAVLDAVAP-AGPVVLVGHSMGGMTIMEYAHRHpghfaARTAGLVFV 133
                    577788777665444445.5669*****************8742221245566665 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.8e-05     0.094      79     137 ..      77     140 ..      50     170 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.8e-05
                 ---HHHHHTTHHHHHHHHT.---EEEEEETHHHHHHHHHHHHSG....GGEEEEEEES---S-- CS
         Ndr  79 fpslddladqllavldhfk.lksviglGvgaGAyilarfalkhp....erveglvLinitskaa 137
                   +l +l+d+l avld       v+ +G   G   ++ +a +hp     r  glv +++t++ +
  KIR60677.1  77 TATLAQLGDDLAAVLDAVApAGPVVLVGHSMGGMTIMEYAHRHPghfaARTAGLVFVSTTAEGH 140
                 5799************9973678******************998333357899**999987765 PP

>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.9e-05      0.12       3     106 ..      30     140 ..      28     203 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.9e-05
  Palm_thioest   3 viwhGl..dsaesn.....mqklaeliekligtyvknve.....igeseaedrkasffgnlndqveavckklelangfhaiGfSQGglflRalierc 87 
                   v++hG   d          + +l+e + +++     +v+      g+s ++  +   + +l d ++av ++   a  + ++G+S Gg+ +  ++ r+
    KIR60677.1  30 VLLHGWtlDG---RswhrqLAELRERFGDRV----RVVTydargHGRSGCMALRTATLAQLGDDLAAVLDAVAPAGPVVLVGHSMGGMTIMEYAHRH 119
                   7789995422...123234555555555554....44443344588888899999999999999999*9996689*********************9 PP

  Palm_thioest  88 ddkkn..vrnlislggpqaGv 106
                   + +       l+ +++  +G 
    KIR60677.1 120 PGHFAarTAGLVFVSTTAEGH 140
                   877656644555555555554 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.037        44      97     120 ..      97     120 ..      69     135 .. 0.74
   2 ?    6.2   0.0    0.0056       6.6     140     200 ..     232     288 ..     216     293 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.037
         DLH  97 tkkvgvvGfCmGGalalllaaevp 120
                  + v++vG  mGG   +++a + p
  KIR60677.1  97 AGPVVLVGHSMGGMTIMEYAHRHP 120
                 35799***************9985 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0056
         DLH 140 aakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsresynee 200
                 aa +  p  al+g++D   p   +e ++ al    ++ el v pgagH  + +++e+ n++
  KIR60677.1 232 AALAHLPAAALVGDRDRLTPPPCAESIAAAL----PATELTVCPGAGHMLMMERPEQVNAA 288
                 555677999999*****99999766666666....99************999999988876 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   0.00014      0.17      92     103 ..      99     110 ..      87     140 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
       PGAP1  92 sviliGHSmGGi 103
                  v+l+GHSmGG+
  KIR60677.1  99 PVVLVGHSMGGM 110
                 69*********8 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       5.2   6.3e+03      14      39 ..      29      54 ..      23      63 .. 0.61
   2 ?   10.7   0.1   0.00021      0.25     107     122 ..     102     117 ..      99     120 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 5.2
      DUF915 14 tifihGyggtaeslnemvkqlenkeg 39
                 +++hG+  + +s ++ +++l +  g
  KIR60677.1 29 AVLLHGWTLDGRSWHRQLAELRERFG 54
                46677777777777776666654444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00021
      DUF915 107 avGhSmGglaltsYle 122
                 +vGhSmGg++++ Y+ 
  KIR60677.1 102 LVGHSMGGMTIMEYAH 117
                 8*************75 PP

>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00019      0.23     118     138 ..      95     115 ..      40     140 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
        LCAT 118 lsgkkvvliaHSmGnllvlyf 138
                 + +++vvl++HSmG+  ++++
  KIR60677.1  95 APAGPVVLVGHSMGGMTIMEY 115
                 56789**********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2183.55
//
Query:       KIR60678.1  [L=109]
Description: hypothetical protein TK50_22625 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 773.54
//
Query:       KIR60679.1  [L=163]
Description: hypothetical protein TK50_22630 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-68  229.3   0.1    1.6e-68  229.2   0.1    1.0  1  DUF3145   Protein of unknown function (DUF3145)


Domain annotation for each model (and alignments):
>> DUF3145  Protein of unknown function (DUF3145)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.2   0.1   9.1e-73   1.6e-68       1     157 []       6     161 ..       6     161 .. 0.99

  Alignments for each domain:
  == domain 1  score: 229.2 bits;  conditional E-value: 9.1e-73
     DUF3145   1 vvyvhsapaalcpHvewavssvlgarvslkWtaqpaapgslraelsWegevgtaarlasaLraweelrfevtedpsegvdgeRysvtPelGlfsaatsa 99 
                 vvyvhs+p a+c+Hvewa+++vl a+v+l+Wtaqp++pg+ rae+ W+g++gt+a+la+aLr+w+++rfevte+ps+gvdgeR++++P++Glf+a+++a
  KIR60679.1   6 VVYVHSTPLAVCSHVEWAIARVLAAPVNLQWTAQPVDPGARRAECGWTGRPGTGAELAAALRQWPMIRFEVTEEPSAGVDGERFMYVPGRGLFRATVGA 104
                 89************************************************************************************************* PP

     DUF3145 100 nGdvvvsEdrlrallekaaedeeelaeeldkllGtawDeeLepfRsagegaevrwLhr 157
                 +Gd+ ++Edrlr ++++a + +e+la++ldk+lGtawD+eLep+R+ag+ga+v+ L+r
  KIR60679.1 105 AGDIQLGEDRLRGIMAAA-RAPEALAHALDKALGTAWDAELEPYRYAGDGAPVTLLTR 161
                 ***************977.99*********************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1173.48
//
Query:       KIR60680.1  [L=578]
Description: glycoside hydrolase family 3 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-83  280.8   0.2    2.6e-83  280.1   0.0    1.4  2  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
     0.0027   17.7   0.5      0.021   14.8   0.2    2.2  2  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
  ------ inclusion threshold ------
       0.12   12.4   0.2       0.28   11.3   0.2    1.6  1  Rv2175c_C        Rv2175c C-terminal domain of unknown functio


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.1   0.0   4.3e-87   2.6e-83       6     318 ..      75     418 ..      71     419 .. 0.94
   2 ?   -4.1   0.0       1.3   7.9e+03     170     187 ..     500     517 ..     488     521 .. 0.77

  Alignments for each domain:
  == domain 1  score: 280.1 bits;  conditional E-value: 4.3e-87
                    HHHTEE-B-SE................-S--HHHHHHHHHH--SEEE--GG.............GTSSHHHHHHHHHHHHHH-SS.....S--EEE CS
  Glyco_hydro_3   6 igqLlvvevse................ekkseeaaellkkyqvGgiilfae.............nledtkqleelieaarqaseksrlg.iPllla 71 
                    +gq l++ +++                 +  ++ ae+++ky++Gg+il +              n+ +++q++el+ ++r a  k ++g  Pll++
     KIR60680.1  75 VGQVLMPYAYGdnatkvstgsaagnraLAGVDTPAEMVAKYRLGGLILVGFsaddptsgnqettNVDNPQQVRELTTGLRDAAGKLPAGaAPLLIG 170
                    6677777766667777777777776666778899**************987999**************************99999887737***** PP

                    E---BTTB---SSS.---S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE---B-----STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHTT-E CS
  Glyco_hydro_3  72 vDqegGlvqrlgeg.tlfPsalalaatssldlikelgriiakelralgididfaPvvdvnrdprngigvrsFsedpelvaalaaamvkGlqgagva 166
                    +Dqe G+v+r+ +g tl+Ps+la +a+ ++ l +++ r++++el+a+gi++dfaPv+dv       ig+rsF++dp+ ++a +a  v+Glqgagva
     KIR60680.1 171 TDQEYGVVTRITDGvTLLPSPLAAGAAGDPALTEAAWRAAGQELAAMGINLDFAPVADVLVTRSTVIGSRSFGADPKRASAQVAGAVRGLQGAGVA 266
                    **************************************************************9999****************************** PP

                    EEEEEETTGTT-SSETTTSEEB----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT-.--BGGG-HHHHIIIIIIIS---SEEEES-TTSHHH CS
  Glyco_hydro_3 167 atvKHFpghGdgavdshkelptvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpald.gtpatgskklltdvLRkelGFdGvvvsDalamkei 261
                    a+vKHFpghG +a+dsh elp+v +s++ l +    pf+a i+ag+ +VM aH++++a+d gtpat s+kllt+vLR +lGF+Gvv++D ++m+  
     KIR60680.1 267 ASVKHFPGHGLSAADSHEELPVVGQSRKVLDSTAFPPFSAGIDAGALAVMSAHLDVTAVDpGTPATFSHKLLTGVLRGQLGFKGVVITDGMNMAP- 361
                    ************************************************************556*****************************987. PP

                    HCCS-HHHHHHHHHHHT-SBEES-S---SGHHHHHHHHHTTSS-HHHHHHHHHHHHH CS
  Glyco_hydro_3 262 adrggkeeavvlaLkAGvDilLvpeertseikalkkavkeGeltearidesvrrvlr 318
                    a+r ++ ea+v+aLkAG+D++L+p+++t+++++l++a+++G+l++ar+ e+v+rvl+
     KIR60680.1 362 AKRWSPGEAAVRALKAGNDLILMPPNVTQAYDGLLAALRDGSLPRARLVEAVTRVLT 418
                    57899**************************************************97 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1.3
                    EEETTGTT-SSETTTSEE CS
  Glyco_hydro_3 170 KHFpghGdgavdshkelp 187
                     H  g+Gdg+ d   + +
     KIR60680.1 500 VHLVGYGDGSGDLAADAA 517
                    5999****9999766655 PP

>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.06   3.6e+02      21      59 ..     121     216 ..      83     450 .. 0.79
   2 !   14.8   0.2   3.4e-06     0.021     117     168 ..     518     566 ..     512     570 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.06
                      EEESGGGSSS-SS-BSSS--..--S---HHHHHHHHHHH....................................................... CS
                      xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx...................................................... RF
  Glyco_hydro_3_C  21 aviGpnadetlklGggsgtv..tvsylvsplegirerles...................................................... 58 
                       ++G +ad   ++G++  t   ++++++++ +g+r+++++                                                      
       KIR60680.1 121 ILVGFSAD-DPTSGNQETTNvdNPQQVRELTTGLRDAAGKlpagaaplligtdqeygvvtritdgvtllpsplaagaagdpalteaawraagqe 213
                      56777788.6666666666668787888888999999888888888888888888888888877777777777777777544444444444444 PP

                      ... CS
                      ..x RF
  Glyco_hydro_3_C  59 ..e 59 
                        +
       KIR60680.1 214 laA 216
                      330 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 3.4e-06
                      EEEEESSGG--TTTGTTTEEEEEE-S--GCCHHHHHHHHHTTSS---B--SS CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C 117 vvlqsggpvavepwkeenvkAilaawlpGqegGtaiadvLfGdvnPsGkLpv 168
                      v +   +p++++   +++ + +la++    ++ ta+a+vL G++ P+G+ pv
       KIR60680.1 518 VTVAMDTPYVLA---KAKSPTLLATYSSSAASMTALANVLAGRARPTGRSPV 566
                      666677788774...5589******************************998 PP

>> Rv2175c_C  Rv2175c C-terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   4.6e-05      0.28       5      56 .]     393     447 ..     390     447 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.6e-05
   Rv2175c_C   5 pGtltvLrDgGfdd...eeilrWLFteDesLpgrPidALregrkrEVkRrAqAlA 56 
                  G+l+ LrDg   +    e+++  +t   +L g+P  A+ + +  E +R A AlA
  KIR60680.1 393 DGLLAALRDGSLPRarlVEAVTRVLTMKFTLAGTPAPAMSTLNDPEHRRAAEALA 447
                 6999******9865222699999******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3917.20
//
Query:       KIR60681.1  [L=334]
Description: glucosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-35  119.9   0.0    1.3e-34  119.5   0.0    1.2  1  Glycos_transf_2  Glycosyl transferase family 2
    3.6e-11   43.4   0.0    5.4e-11   42.8   0.0    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
     0.0002   20.9   0.0    0.00035   20.1   0.0    1.3  1  Glyco_transf_21  Glycosyl transferase family 21
     0.0004   20.8   0.0    0.00085   19.8   0.0    1.5  1  Glyco_tranf_2_4  Glycosyl transferase family 2
    0.00094   19.0   0.4     0.0013   18.6   0.4    1.3  1  Amidohydro_2     Amidohydrolase


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.0   3.5e-38   1.3e-34       1     168 [.       9     172 ..       9     174 .. 0.96

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 3.5e-38
                      EEEEEESS-...TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEE CS
  Glycos_transf_2   1 svviptyNe...ektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDde 91 
                      svv+p++Ne    ++ +  l+++l+    + +e++vvDDgStD+t++ l  l+++ p++rv+r+ +n G+++al ag+ +a+g++++ lDaD++
       KIR60681.1   9 SVVVPMFNEesvLPLFAPRLRAVLDA-LGEPYEVLVVDDGSTDGTPAGLAGLRARWPQLRVLRLRRNSGHQAALVAGVLRARGRWVVSLDADLQ 101
                      8********77777778888889998.******************************************************************* PP

                      E-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHH CS
  Glycos_transf_2  92 pdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrrealee 168
                       +p+++ ++++++ +dg d+v+g r  ++ +t++++++        +y++  +r  + +++   g ++ll+r a+e 
       KIR60681.1 102 DPPETVAEMLRRARADGLDIVYGVRADRSRDTRFKRWT------AAGYYRLMRRLVGKQVPAQAGDFRLLSRAAVEA 172
                      ************************************98......79***************************9976 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   1.5e-14   5.4e-11       1     176 [.       6     174 ..       4     191 .. 0.81

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 1.5e-14
  Glyco_tranf_2_3   1 prdlavlVptfneedvlge...vlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlv 91 
                      p  l+v+Vp fnee+vl      l+++l     ++ev vv+d+s+++t + + +l a+ p+  +rv++  rn    g   al+ ++ ++++++v
       KIR60681.1   6 PA-LSVVVPMFNEESVLPLfapRLRAVLDALGEPYEVLVVDDGSTDGTPAGLAGLRARWPQ--LRVLRLRRNS---GHQAALVAGVLRARGRWV 93 
                      45.9***********7765444899999755689*************************99..5888887764...5677899*********** PP

  Glyco_tranf_2_3  92 llvDdDtvvePdtlkrllqffltpkvgavgtpvfllnrstlvsalgalefaerhlrflaarralg.vltlnGsgslirrevlkele 176
                      + +D+D    P+t++ +l+ +++++ ++v++ +  + r+t + +++a  ++     +l +r+ ++ v++ +G + l  r+ +++l+
       KIR60681.1  94 VSLDADLQDPPETVAEMLRRARADGLDIVYGVRADRSRDTRFKRWTAAGYY-----RLMRRLVGKqVPAQAGDFRLLSRAAVEALR 174
                      *******************************99888888888888874422.....222333333356566788777777777775 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   9.7e-08   0.00035      21     116 ..      80     173 ..      65     178 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 9.7e-08
  Glyco_transf_21  21 nllqaleaakydllvisDsdvrvkpdyLeellaaledpkvglVtslpvgsdakglaaaleaaflntlagvlqaklsglgfavGksmalrreaLe 114
                      +l+ ++ +a+ +++v +D+d   +p++++e+l++ + ++  +V ++ +   +++  ++  aa  + l+++l    +++    G + +l+r+a+e
       KIR60681.1  80 ALVAGVLRARGRWVVSLDADLQDPPETVAEMLRRARADGLDIVYGVRADRSRDTRFKRWTAAGYYRLMRRLVG--KQVPAQAGDFRLLSRAAVE 171
                      68899999*****************************************999999999999999999999998..8999999********9999 PP

  Glyco_transf_21 115 ai 116
                      a+
       KIR60681.1 172 AL 173
                      86 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.4e-07   0.00085      17      81 ..      35      99 ..      15     100 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.4e-07
  Glyco_tranf_2_4 17 lgf.drilvydndstDgtrailke....lpevkllhvdksyederrqvellkallaryaeadwvlvvDaD 81
                     lg   ++lv+d++stDgt a l+     +p++++l+ + +      q +l   +l+  a+++wv+ +DaD
       KIR60681.1 35 LGEpYEVLVVDDGSTDGTPAGLAGlrarWPQLRVLRLRRNSG---HQAALVAGVLR--ARGRWVVSLDAD 99
                     3322359***********999955444489999999999765...57777777773..479********9 PP

>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.4   3.7e-07    0.0013      68     193 ..      76     199 ..      25     232 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.7e-07
                   HHHHHHHHHHHHHCTTCBECEEECTSSHCHHHHHHHHHHHHTTECEEEEESSTTTCCTTTCGGH.......HHHHHHHHHHT-EEEEE....CHHHC CS
  Amidohydro_2  68 gannrvlaeaakrpdrfvggaavvpldpedaaaeleraveelgfkGvrlnphvggddllgdrld.......rpifealeelglpvdihtGpspewlf 157
                   g ++ ++a ++++ +r v + + +++dp++++ae+ r++   ++ G+ +   v+ d+  + r+        ++++++l+  ++p +           
    KIR60681.1  76 GHQAALVAGVLRARGRWVVSLDADLQDPPETVAEMLRRA---RADGLDIVYGVRADRSRDTRFKrwtaagyYRLMRRLVGKQVPAQAG--------- 160
                   45589999*******************************...777766666666666666666666777777**************99......... PP

                   HHHHHHHHHHHHHHHCCHHHHCTT....SEEEESGGGTT.....T CS
  Amidohydro_2 158 ggpqettraiqplllsgvarkfPn....lkivlaHgGgp.....s 193
                             ++ ++ +++r++P+    l++v+  +G+p     +
    KIR60681.1 161 ------DFRLLSRAAVEALRELPErspvLRLVVPWLGFPsgevtY 199
                   ......556667777777777777777799999988888666441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2351.78
//
Query:       KIR60682.1  [L=775]
Description: hypothetical protein TK50_22645 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5201.26
//
Query:       KIR60683.1  [L=905]
Description: hypothetical protein TK50_22650 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-22   80.5   0.0    2.3e-22   79.8   0.0    1.4  1  CBM9_1       Carbohydrate family 9 binding domain-like
    2.5e-22   79.9   0.0    5.6e-22   78.8   0.0    1.6  1  PIG-L        GlcNAc-PI de-N-acetylase
    2.4e-12   46.9  20.3    7.8e-09   35.7   2.3    4.9  5  NPCBM_assoc  NPCBM-associated, NEW3 domain of alpha-galactosi
     0.0013   18.9   0.8        4.9    7.4   0.0    4.3  5  FixG_C       IG-like fold at C-terminal of FixG, putative oxi
     0.0061   16.6   0.5         14    5.9   0.0    4.3  4  Fn3-like     Fibronectin type III-like domain
  ------ inclusion threshold ------
      0.027   14.7  14.3       0.74   10.2   0.6    4.7  3  DUF11        Domain of unknown function DUF11
      0.097   11.7   0.0       0.24   10.5   0.0    1.6  2  LpxK         Tetraacyldisaccharide-1-P 4'-kinase
      0.098   13.1   0.1        1.3    9.6   0.0    2.9  3  MG2          MG2 domain
       0.12   13.1   1.4         45    4.8   0.1    4.2  5  fn3_5        Fn3-like domain


Domain annotation for each model (and alignments):
>> CBM9_1  Carbohydrate family 9 binding domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   1.2e-25   2.3e-22       1     183 [.     576     776 ..     576     778 .. 0.84

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 1.2e-25
                 SSSS-.-GGGGGS-EEE--EEEES-T..TTS-EEEEEEEE-SSEEEEEEEEE-SS----SSSG.....GGSSEEEEEEETT---.-SS--TTEEEEEEE CS
      CBM9_1   1 IDGkv.devWskaqsleiskllegtvpsssdasgtfkvlwdekaLYvlvevtDdvlndssadp.....wedDsvEiflDennsk.tteynandfqyrvn 92 
                 +DG + +  +   + l+ s+++eg+ +  +das++ +++w ++aL v v+vtDdvl  +   +      ++DsvEi +D++ ++ +t+   +++ + v 
  KIR60683.1 576 VDGVAsAGEYPGQE-LDFSRIWEGQATTPQDASAKGRIAWTADALKVFVQVTDDVLGRKVVPQdckrqRRTDSVEIIVDPKGNStDTSTVFKAGIFPVT 673
                 68998888888877.**********9888**************************65544433588889**********99988455555566666665 PP

                 TT--EE......E-TT-.........-GGGEEEEEEEET..TEEEEEEEEE-SS-.---TTEEEEEEEEEEE.E-TTS-EEEEEESS-SSS-TTT-GGG CS
      CBM9_1  93 ldneas......vdegkkk......liaegvtsaskkse..ggYivEaaiplktiatpaegkviGfdlaind.dddggtregiigwsdttgnnyqdpsv 176
                  d + +         + ++      ++a g+t++sk ++  +gY++Ea+ip++ ++   +++++Gf++ ++d d+++   ++++gws +tg+   dp++
  KIR60683.1 674 DDPANGdppcwqR--DADNrqgpgaTTAPGMTVVSKVTSpyAGYTIEASIPFAVLPDAVDPNRMGFNVLVYDsDTQDLSSQSRLGWSTFTGVR-ADPYR 769
                 5555545577532..222246788899********999999***********999*****************99999****************.***** PP

                 SEEEEEE CS
      CBM9_1 177 fGkltLk 183
                 +G +tL 
  KIR60683.1 770 YGLATLP 776
                 **99995 PP

>> PIG-L  GlcNAc-PI de-N-acetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   2.8e-25   5.6e-22       1     131 []      48     186 ..      48     186 .. 0.92

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 2.8e-25
                 EEEESSTTHHHHHHHHHHHHHHHTT-EEEEEECE--TT---STTTTHH-HHHHHHHHHHHHHHHHCTE..EEEEECCCBTT-STT........S-CHHH CS
       PIG-L   1 llvlAHpDDellfaggtiaklvaagvevkivcltaGdagsplatleekeelaeiRekEaraaakhlgvadedvffldfpDgsles........ydedel 91 
                 l+v+AHpDDe+ + + + +   + g++  +v++t+G+ g ++  lee   l+ iRe+E+r a+   gv  e+++ ld  D ++          + +d++
  KIR60683.1  48 LFVSAHPDDEAGSLATLGQWKEKYGAKAGVVTITRGEGGGNAVGLEEGPPLGIIREREERTAIGRAGV--ENLYNLDRVDFWYTAsaplseriWGHDDT 144
                 79*********9996555555555**********************99********************..*******7777777777888********* PP

                 HHHHHHHHHHH--SEEEEE-TTTT..H-HHHHHHHHHHHHH. CS
       PIG-L  92 lddlaklieryrPdvvltldpegd..dhpDHtavasaavaal 131
                 l +++++i+++rP++v+t++p +   +h +H+ +a++a++a+
  KIR60683.1 145 LGQIVRVIRQTRPEIVMTMNPSPTpgNHGNHQQAARFAAEAF 186
                 ********************999999************9985 PP

>> NPCBM_assoc  NPCBM-associated, NEW3 domain of alpha-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0     0.007        14      46      64 ..     335     353 ..     330     356 .. 0.88
   2 !   35.7   2.3   3.9e-12   7.8e-09       2      73 ..     337     407 ..     336     413 .. 0.91
   3 !   19.3   2.0     5e-07     0.001       3      65 ..     467     527 ..     465     549 .. 0.84
   4 ?   -1.8   0.0       1.9   3.8e+03       3      31 ..     694     722 ..     684     722 .. 0.81
   5 ?    0.6   0.2      0.34   6.7e+02      34      63 ..     854     883 ..     853     890 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.007
  NPCBM_assoc  46 slapGetveatvkVtppag 64 
                  +lapGetv++t+ V++p +
   KIR60683.1 335 DLAPGETVKVTAHVRAPRD 353
                  79**************976 PP

  == domain 2  score: 35.7 bits;  conditional E-value: 3.9e-12
  NPCBM_assoc   2 epGetvtltltvtndgtaaatnvslslslPeGWtvvevspasaaslapGetveatvkVtppagaaaGdyevt 73 
                   pGetv++t+ v    ++a+ + +++l+lP+GWt  + s+a   s+++G++ +at++V +paga++ +++++
   KIR60683.1 337 APGETVKVTAHVRAPRDRALAAPRIDLRLPQGWT-AKGSGALRGSVPAGKERTATFTVAVPAGADTNQQQLV 407
                  69********************************.888888888********************99887665 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 5e-07
  NPCBM_assoc   3 pGetvtltltvtndgtaaatnvslslslPeGWtvvevspasaaslapGetveatvkVtppaga 65 
                   G++ ++++ + n+g+a ++++ ++l lP+G t   ++++s + lapG+t  +t++Vt  + +
   KIR60683.1 467 SGQSRSVRVDLRNHGEA-TRSGTVTLGLPAGFT-ADAATKSYTGLAPGATGAVTFTVTNTDAT 527
                  5999999******9975.6899***********.99*********************965544 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.9
  NPCBM_assoc   3 pGetvtltltvtndgtaaatnvslslslP 31 
                  pG+t++  +tv+++ t++  +  +++s P
   KIR60683.1 694 PGATTAPGMTVVSKVTSPYAGYTIEASIP 722
                  67888888888888888888888887777 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.34
  NPCBM_assoc  34 WtvvevspasaaslapGetveatvkVtppa 63 
                  W  +++ +++  +l+++++v++ v Vt++ 
   KIR60683.1 854 WDGSAALGDRTVELKANRSVTVVVPVTSGR 883
                  555566677888999999999999999876 PP

>> FixG_C  IG-like fold at C-terminal of FixG, putative oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0024       4.9      58      91 ..     324     356 ..     316     372 .. 0.76
   2 ?    4.3   0.0     0.022        44      67      97 ..     377     407 ..     359     427 .. 0.75
   3 ?    1.9   0.0      0.13   2.5e+02      36      89 ..     474     527 ..     460     557 .. 0.73
   4 ?   -2.7   0.1       3.3   6.5e+03      90     116 ..     640     665 ..     618     667 .. 0.65
   5 ?   -1.5   0.0       1.4   2.9e+03      61      85 ..     860     881 ..     837     892 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0024
                 S-EE.E.S--EEEE-TT-EEEEEEEEEE-GGG-S CS
      FixG_C  58 glelagraekeitvapgekrkvpvfvrvpaealk 91 
                 g+el   +++ +++apge++kv++ vr+p++ + 
  KIR60683.1 324 GTEL-YLTTDRFDLAPGETVKVTAHVRAPRDRAL 356
                 5666.435799******************98843 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.022
                 -EEEE-TT-EEEEEEEEEE-GGG-SSSEEEE CS
      FixG_C  67 keitvapgekrkvpvfvrvpaealkkkstpi 97 
                    +v++g++r+ +++v vpa+a +++++ +
  KIR60683.1 377 LRGSVPAGKERTATFTVAVPAGADTNQQQLV 407
                 55689*****************977766644 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.13
                 EEEEEE-SSS-EEEEEEEES-SS-EE.E.S--EEEE-TT-EEEEEEEEEE-GGG CS
      FixG_C  36 tlkilNktekprrytlsveglpglelagraekeitvapgekrkvpvfvrvpaea 89 
                 ++ ++N  e +r+ t+++   +g++ +  +++ + +apg +  v+++v+ + + 
  KIR60683.1 474 RVDLRNHGEATRSGTVTLGLPAGFTADAATKSYTGLAPGATGAVTFTVTNTDAT 527
                 567888888888888888744588885566788889999999999999876555 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 3.3
                 -SSSEE.EEEEEEEEGGGTEEEEEEEEE CS
      FixG_C  90 lkkkst.pitfkvtdddeketverksrF 116
                 +++ +t  +++ v  d++++++ ++++F
  KIR60683.1 640 KRQRRTdSVEIIV--DPKGNSTDTSTVF 665
                 4556666888888..6778888888888 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 1.4
                 E.E.S--EEEE-TT-EEEEEEEEEE CS
      FixG_C  61 lagraekeitvapgekrkvpvfvrv 85 
                 l g  +++++++++ +++v+v v+ 
  KIR60683.1 860 L-G--DRTVELKANRSVTVVVPVTS 881
                 4.3..48999999999999998876 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.027        53      26      45 ..     333     353 ..     332     368 .. 0.79
   2 ?   -0.5   0.0      0.68   1.3e+03      29      42 ..     381     394 ..     378     405 .. 0.86
   3 !    5.9   0.0    0.0071        14      27      53 ..     507     533 ..     505     548 .. 0.73
   4 ?   -0.0   0.0      0.49   9.8e+02      27      43 ..     865     881 ..     862     896 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.027
                 EEEE-TT-EEEEEEEEEC.GG CS
    Fn3-like  26 kveLapGesktvtftldr.kd 45 
                 + +LapGe+ +vt  + + +d
  KIR60683.1 333 RFDLAPGETVKVTAHVRApRD 353
                 679**********99985455 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.68
                 E-TT-EEEEEEEEE CS
    Fn3-like  29 LapGesktvtftld 42 
                 +++G+++t+tft+ 
  KIR60683.1 381 VPAGKERTATFTVA 394
                 899********996 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0071
                 EEE-TT-EEEEEEEEECGGG-EEETTT CS
    Fn3-like  27 veLapGesktvtftldrkdlsvwdeek 53 
                 + LapG++  vtft++ +d      ++
  KIR60683.1 507 TGLAPGATGAVTFTVTNTDATLPTANA 533
                 459*************99976655554 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.49
                 EEE-TT-EEEEEEEEEC CS
    Fn3-like  27 veLapGesktvtftldr 43 
                 veL++  s tv +++++
  KIR60683.1 865 VELKANRSVTVVVPVTS 881
                 889********999986 PP

>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.6   0.00037      0.74       9      87 ..     335     404 ..     312     408 .. 0.75
   2 ?    6.4   4.3    0.0054        11      12      81 ..     467     526 ..     457     533 .. 0.78
   3 ?   -2.9   0.0       4.4   8.7e+03      40      51 ..     699     710 ..     623     726 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00037
       DUF11   9 evrpGdtvtytltvtNtgpasangvvvtDtlPaglayvsvsasqgtasaltsv..gsLeagesatlsftvrvtrtaasgal 87 
                 +++pG+tv++t  v+ +  ++++  ++   lP+g ++             +++  gs++ag+++t +ftv v++ a+++++
  KIR60683.1 335 DLAPGETVKVTAHVRAPRDRALAAPRIDLRLPQGWTAKG-----------SGAlrGSVPAGKERTATFTVAVPAGADTNQQ 404
                 566777777777777777777777777777777766322...........2223489*****************9999873 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0054
       DUF11  12 pGdtvtytltvtNtgpasangvvvtDtlPaglayvsvsasqgtasaltsvgsLeagesatlsftvrvtrt 81 
                 +G+  ++ + ++N g a+++g+v    lPag+++  ++ s+         + L++g++  ++ftv+ t +
  KIR60683.1 467 SGQSRSVRVDLRNHGEATRSGTVTL-GLPAGFTADAATKSY---------TGLAPGATGAVTFTVTNTDA 526
                 6888889999999999999665555.599999988888882.........56999999999999887665 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.4
       DUF11  40 Paglayvsvsas 51 
                  +g++ vs  +s
  KIR60683.1 699 APGMTVVSKVTS 710
                 567776666555 PP

>> LpxK  Tetraacyldisaccharide-1-P 4'-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00012      0.24     175     259 ..     120     212 ..     115     213 .. 0.73
   2 ?   -3.1   0.0       1.6   3.1e+03      92     129 ..     857     896 ..     849     898 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
                 GGGG-SEEEE..........-TTTS.........SSS-EEEEEEEE.EETTS-EE-GGGGTTS-EEEEESSTTHHHHHHHHHHHT--EEEEEEE CS
        LpxK 175 rlkradlvilngakaeeeeaekaee.........ksipvlrmrlepkklallaaaeeealagkkvlavaGignPerFfktLealglevvetlaf 259
                 +l+r+d+ ++++a  +e+   + ++         +++p++ m+++p+  +  +++++++ a++++ a+ + ++P++F ++L+++gl+  ++++f
  KIR60683.1 120 NLDRVDFWYTASAPLSERIWGHDDTlgqivrvirQTRPEIVMTMNPSP-TPGNHGNHQQAARFAAEAFHAAADPKAFPEQLRKEGLKPFRAAKF 212
                 666666666655555444433322255556666688999999999955.4555789999999999*********************99887776 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.6
                 HHHH-HHHHHHHHHST..SEEEEESSHHHHHHHHHHHC-- CS
        LpxK  92 aaevGDEplllarrtg..vpvvVgsdRvaaarallakael 129
                 +a  GD ++ l+++    v v V s R  a+ a+ +++++
  KIR60683.1 857 SAALGDRTVELKANRSvtVVVPVTSGRPTALLAAYESHGA 896
                 5678999998887665346777889999999999888875 PP

>> MG2  MG2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.3   2.6e+03       7      24 ..      33      50 ..      30      66 .. 0.81
   2 ?    9.6   0.0   0.00063       1.3       2      40 ..     327     365 ..     326     409 .. 0.75
   3 ?   -2.8   0.0       4.7   9.4e+03      73      87 ..     537     551 ..     513     585 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.3
                S-SEE-TT-EEEEEEEEE CS
         MG2  7 DRglYrPgetVslkallr 24
                DR   r+g+tV l +l  
  KIR60683.1 33 DRHGGRAGDTVDLDVLFV 50
                666669******999875 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00063
                 EEEEES-SEE-TT-EEEEEEEEESTTCSB---EEEEEEE CS
         MG2   2 afvytDRglYrPgetVslkallrdetlqglaklplklti 40 
                 +++ tDR  + PgetV+++a +r ++ ++la  ++ l++
  KIR60683.1 327 LYLTTDRFDLAPGETVKVTAHVRAPRDRALAAPRIDLRL 365
                 7899********************999999885554444 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 4.7
                 SEEEEEEEEECSTTT CS
         MG2  73 lGeysvelsadsaee 87 
                  G+y +++ + sa++
  KIR60683.1 537 DGDYGITITTTSAAG 551
                 344444443332222 PP

>> fn3_5  Fn3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.61   1.2e+03      57      85 ..     325     353 ..     302     362 .. 0.83
   2 ?    4.8   0.1     0.023        45      68      94 ..     381     407 ..     372     415 .. 0.86
   3 ?   -0.8   0.0       1.2   2.4e+03      64      82 ..     461     479 ..     454     496 .. 0.77
   4 ?   -0.7   0.1       1.1   2.2e+03      31      31 ..     492     492 ..     463     558 .. 0.54
   5 ?    1.8   0.0      0.19   3.7e+02      62      83 ..     861     882 ..     828     893 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.61
       fn3_5  57 aaltfetskvtvpAnssktvtvtldlpsd 85 
                 + l ++t  + + ++++++vt+ + +p+d
  KIR60683.1 325 TELYLTTDRFDLAPGETVKVTAHVRAPRD 353
                 66777889999***********9999875 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.023
       fn3_5  68 vpAnssktvtvtldlpsdakkkngyfv 94 
                 vpA++++t t+t+ +p +a+ +++++v
  KIR60683.1 381 VPAGKERTATFTVAVPAGADTNQQQLV 407
                 9***************99999555544 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.2
       fn3_5  64 skvtvpAnssktvtvtldl 82 
                 + +t++ ++s+ v+v+l  
  KIR60683.1 461 PVLTIGSGQSRSVRVDLRN 479
                 6789999999999998865 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.1
       fn3_5  31 n 31 
                  
  KIR60683.1 492 G 492
                 2 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.19
       fn3_5  62 etskvtvpAnssktvtvtldlp 83 
                   ++v ++An+s+tv v ++ +
  KIR60683.1 861 GDRTVELKANRSVTVVVPVTSG 882
                 5689*************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (905 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 6255.30
//
Query:       KIR60684.1  [L=387]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-27   97.4   0.0    1.3e-27   97.1   0.0    1.1  1  ROK       ROK family
     0.0019   18.0   2.0     0.0036   17.2   0.3    2.4  2  MarR_2    MarR family
     0.0068   16.2   0.6      0.026   14.3   0.6    2.1  1  HTH_IclR  IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.014   14.9   0.1      0.028   14.0   0.1    1.5  1  HTH_24    Winged helix-turn-helix DNA-binding
      0.082   12.9   0.0       0.16   11.9   0.0    1.4  1  MarR      MarR family
       0.18   12.5   2.8       0.89   10.2   0.1    3.0  3  HTH_32    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.0   4.3e-31   1.3e-27      12     291 ..     101     372 ..      91     375 .. 0.83

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 4.3e-31
                 EEEEEETTS-EEEEEEEEEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCC.CCTTHHHHHHHHHTS-EEEEEHHHHH CS
         ROK  12 alalvdeegeilarekvetptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitw.enfdlvekleerlnvpvevenDvnaa 109
                  + + d++g+++a++ v + + ++ +t+  ++ el  +   +++   +v+i++pG+     g +  +p ++  e  ++ e+++ +l+vpv+v+nDvn +
  KIR60684.1 101 SCEIADSDGTVVAHRTV-RLAGDIIDTICRSVPELAGDGLPALR---GVAIAAPGVS--SGGAVRLAPSVGLvEGRPIGEAVQRHLGVPVVVDNDVNLM 193
                 67788999999999999.88888888888888888877755555...********76..77888899999999************************** PP

                 HHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-..TTS-B-TTS-BSBHHHCCSHHHHHHCHTC....CGTTS-HHHHHH CS
         ROK 110 alaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqld..pegekcgCGnqgClEtlasgralekraqq....kgekleakeiik 202
                 a +E+  ga +dv +++++ v  G+GaG +++g++++G++G age+G ++ld  + g  +  +    +E+  s++a+++r+      +  +++++ +++
  KIR60684.1 194 AAGEHAAGAGSDVADLLLLHVADGIGAGLVLDGQVRRGAGGAAGEVGFLPLDpaDRGHDGVGP----FEARWSENAVAERVVAlapgRRPDAPVAALVE 288
                 ****************************************************44444445555....55555555555555555555788899999999 PP

                 HHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHHHHHHHHHHHCCTTTTCCCT-EEEE-S-STTHHHHHHHHHH CS
         ROK 203 laekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadklleairklvkkylnkklevpvveivaaklgdkagllGaaaLa 291
                 la+  de a++ ++++  +  ++i+  + ++dp ++ l G   + d+        ++++++ +++ +  e++ a lgd a l Ga++ a
  KIR60684.1 289 LARA-DERAAAYLDEVLTAWSRLIVSCVCVIDPGRVLLSGAAAQLDDPA---VDRLQALVAAAAPSTT-EVRRAVLGDRAVLHGAVSYA 372
                 9998.***********************************998888766...3444444445555555.5889***********99876 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   1.2e-06    0.0036      22      61 ..      35      73 ..      23      76 .. 0.83
   2 ?   -2.0   0.1       1.2   3.5e+03      10      20 ..     285     295 ..     277     304 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-06
                EEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE.ESSSSSS CS
      MarR_2 22 ltvgelarrlglsksavsrilkrLvaaGLverr.pgpeDkR 61
                l+ +el++ +gls+++++ ++++L a G++ +r pg  + R
  KIR60684.1 35 LSRAELTELTGLSPATLTPLVRELIAEGYLIERgPG--ASR 73
                5779*************************9877444..555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.2
                 HHHHHHCTTTS CS
      MarR_2  10 vLaaLgrrpgr 20 
                 +L +L+r+++r
  KIR60684.1 285 ALVELARADER 295
                 67788888874 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.6   8.7e-06     0.026      14      48 ..      30      64 ..      23      68 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.7e-06
                TTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR 14 eapqeltlselArrtglpkStvhRlLqtLvelGyv 48
                ++ + l+ +el + tgl+++t   l++ L+ +Gy+
  KIR60684.1 30 RQVRVLSRAELTELTGLSPATLTPLVRELIAEGYL 64
                444558889*************************8 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   9.3e-06     0.028      18      47 ..      35      64 ..      29      65 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.3e-06
      HTH_24 18 isqreLAerlglSpstvnrrlkrLeeeGlI 47
                +s +eL e +glSp+t++  +++L+ eG++
  KIR60684.1 35 LSRAELTELTGLSPATLTPLVRELIAEGYL 64
                7899************************96 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.4e-05      0.16      16      47 ..      33      64 ..      19      69 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.4e-05
                TTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR 16 gplsvseLakklgvskstvtrvldrLekkGli 47
                  ls +eL +  g+s++t+t ++++L+ +G++
  KIR60684.1 33 RVLSRAELTELTGLSPATLTPLVRELIAEGYL 64
                4456679***********************75 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1    0.0003      0.89      17      70 ..      64     118 ..      33     119 .. 0.84
   2 ?    0.7   0.1      0.27   8.2e+02       5      42 ..     261     291 ..     258     313 .. 0.50
   3 ?   -2.3   0.0       2.5   7.4e+03      28      49 ..     331     351 ..     326     370 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0003
      HTH_32  17 Lkdr....prrgrpr.klsdevrariiallreeprWsprqlaarlaeregvkvShstvy 70 
                 L +r    +r+grpr  l    ra+++a +     + p++l+ ++a+ +g +v+h+tv+
  KIR60684.1  64 LIERgpgaSRAGRPRaMLEFNPRAELVAAV----SLEPSRLSCEIADSDGTVVAHRTVR 118
                 44555555899****66*************....456888888888889999*****98 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.27
      HTH_32   5 wlkRyneeGlegLkdrprrgrprklsdevrariiallr 42 
                 w +   +e + +L++ +r+ +p       +a++++l+r
  KIR60684.1 261 WSENAVAERVVALAPGRRPDAP-------VAALVELAR 291
                 5555555555566655555444.......444444442 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.5
      HTH_32  28 klsdevrariiallreeprWsp 49 
                 +l+d  ++r+ al+  + + s+
  KIR60684.1 331 QLDDPAVDRLQALVA-AAAPST 351
                 567777777777763.223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2627.42
//
Query:       KIR60685.1  [L=348]
Description: iron ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-28   99.4   6.0    2.1e-28   99.4   6.0    1.5  2  SBP_bac_6   Bacterial extracellular solute-binding protein
    2.6e-14   53.7   8.3    3.8e-14   53.2   8.3    1.1  1  SBP_bac_8   Bacterial extracellular solute-binding protein
    8.9e-14   51.8   2.7    2.4e-13   50.4   2.7    1.6  1  SBP_bac_11  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       0.4   2.4e+03      83      93 ..      60      70 ..      59      75 .. 0.86
   2 !   99.4   6.0   3.4e-32   2.1e-28       1     245 []      86     332 ..      86     332 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.4
   SBP_bac_6 83 Peykgkvalpg 93
                Peykgkv + +
  KIR60685.1 60 PEYKGKVEILN 70
                9******9987 PP

  == domain 2  score: 99.4 bits;  conditional E-value: 3.4e-32
   SBP_bac_6   1 nplpdlilsfdkdflekfieeglfqpldpanlpnvnkdfaeeglkdpdgkyypygvgplvlavnkdrlkgrpvPksWaDLldPeykgkvalpgnngsdl 99 
                 np +d+ ++ +++ l+  ++e+l+++++pa +++++     +++kd +g++ +    p v+++n ++l+ +++Pk+W+DLl+Pe+k+k+++++ + s++
  KIR60685.1  86 NPQADVWWGGTQQGLSAGASEDLLTGWQPAFAAKMD-----AKYKDAEGRWFGEILLPEVIMYNNKALTPEQAPKDWDDLLKPEWKDKIVIRDVAASGT 179
                 6889999999999999999*****************.....****************************************************999666 PP

   SBP_bac_6 100 fealllalyk....dfg.edgvkkllrnlkanlhpaq...mvkaagslesgepavsvvpyffadilpekkkgknlkvvwPedGalvspifmlvkkgkkk 190
                    + +a+ +    d    +++ ++l++l an  +++    + +++   +    v  +++    +l++++++ ++  v P +Ga+v ++ ++ +kg + 
  KIR60685.1 180 MRSIYAAMIMrqspDGSnPQPGYDWLKKLDANTGSYAanpADLYLKLSRQQ--GVLSAWNLQDILLQANQSNMPFGYVMPASGAPVLVDGIAAVKGGNT 276
                 66555555555999555599*****************97444444444444..59999999999999999999********************9999** PP

   SBP_bac_6 191 elakafidfllspevqailakaggvfPvvtnpavlne.lpegaklkwldwdyirkn 245
                   a++f++fl+++ ++a+lak+++++P+v+ +++ +  ++ + k+++++wd i kn
  KIR60685.1 277 TGAQKFMEFLFDDALRADLAKDYYQIPAVEIAEKPQWlAELNLKPLDVNWDVIGKN 332
                 ****************************9444444431344888999999988765 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   8.3   6.3e-18   3.8e-14       2     273 ..      51     313 ..      51     320 .. 0.74

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 6.3e-18
                 HHHHHHHH-.T..EEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GG...GSTTHHH-HHHHHTT--TS.----EEEEEEE CS
   SBP_bac_8   2 lakefekkt.g..vkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladls...dldnlddltdalaavgydgklygvPyasetp 94 
                 ++++f++k+     kv++ + + +++ + ++a+ a    p++dv+w+ + +      +g+ +dl    +   +++++++++++++ +   g  +    p
  KIR60685.1  51 VVDQFTAKYpEykGKVEILNLGAQEILERVRAEKA---NPQADVWWGGTQQ---GLSAGASEDLLtgwQPAFAAKMDAKYKDAEGRW--FGEILL---P 138
                 689****8765447899999999*********865...5889988886544...444577777665655567788999999998888..555544...4 PP

                 -EEEEEHHHH.HHS.---BHHHHHHHHHHHHHH-SEGG--.-GGG..GGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE-S....--SSTTTT CS
   SBP_bac_8  95 yvliynkdll.ekaedpktwdellaaakklkgkfglpdpa.sgwl..qaallakdgksldddggkdglkealellkklkdngktydtg..adavsefan 187
                 +v++yn ++l ++   pk+wd+ll+  +++k k+ + d a sg++  + a+++   +s+d+   +       ++lkkl +n   y ++  + + ++ ++
  KIR60685.1 139 EVIMYNNKALtPEQ-APKDWDDLLK--PEWKDKIVIRDVAaSGTMrsIYAAMI-MRQSPDGS--N--PQPGYDWLKKLDANTGSYAANpaDLYLKLSRQ 229
                 56666655552555.9*********..*********99652675544555555.56777765..2..25678**********99976543445555555 PP

                 TSBSEEEE-TTHHHHHH-TTTSEEEE--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---BS-S-TTTHHH CS
   SBP_bac_8 188 GevaftingswdiaaaqkagkklgaivpkqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektgyipvnksaalspe 273
                 + v+ + n   ++ +a++ + ++g+++p++g+++ ++g+a+ k+ +     A++F+++l +++  a+la+++  ip+   a+ + +
  KIR60685.1 230 QGVLSAWNLQDILLQANQSNMPFGYVMPASGAPVLVDGIAAVKGGNTTG--AQKFMEFLFDDALRADLAKDYYQIPAVEIAEKPQW 313
                 555555555555556666678***********************99888..*******************9988888777665555 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   2.7   4.1e-17   2.4e-13       1     229 [.      37     300 ..      37     301 .. 0.81

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 4.1e-17
                 .EEEE-SSTHHHHHHHHHHH.HHHH-..--EEEEESSHHHHHHHHHHH.....-SEEEESSH.HHHHHHHHGGGGG.................GG-EEE CS
  SBP_bac_11   1 ltvaaagslaaalrelaaaF.eahtg..vkvevsaggsgklarqiadga...rpDvwipassawlellaaaglvqa.................esavpl 76 
                 lt+++a + +++ + ++++F +++++   kve+   g++++++++++++   ++Dvw+ +++  l + a+++l++                  ++    
  KIR60685.1  37 LTIYTARD-KKVSTFVVDQFtAKYPEykGKVEILNLGAQEILERVRAEKanpQADVWWGGTQQGLSAGASEDLLTGwqpafaakmdakykdaeGRWFGE 134
                 79999999.899999*****55555566*****************7777788*********99999999999998777777777777776533222222 PP

                 EEEEEEEEESTT-..TT.---SHHHHHHSS-..-EEEE--T-TTTTH..H.HHHHGGG--.......HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SE CS
  SBP_bac_11  77 assplviavpkgn..pk.kikgwadLlkpgl..klavadPttspsGl..aalalleaaga.......qellkalekkvvklgessrqlltaveageada 161
                    p vi+++  +  p+  +k+w+dLlkp++  k+++ d ++s++ +  +a ++++++ +       +++lk+l  ++  ++ ++ +l+  + + +  +
  KIR60685.1 135 ILLPEVIMYNNKAltPEqAPKDWDDLLKPEWkdKIVIRDVAASGTMRsiYAAMIMRQSPDgsnpqpgYDWLKKLDANTGSYAANPADLYLKLSRQQGVL 233
                 334567777776677554899**********888******99999998877788887733456666799****************************** PP

                 EEEEHHHHH..HSTTSSEEEE--TTT--...EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHTT- CS
  SBP_bac_11 162 givyeseakaaengdkleavylpeglnldpldypaavlkkaakreaAraFlafLrspeaqailrkyGf 229
                    +++++++++n+ + ++ y+ +   + p+ +  + + k+++ + A++F++fL  ++ +a l+k+ +
  KIR60685.1 234 SAWNLQDILLQANQSNMPFGYVMPASGA-PVLVDGIAAVKGGNTTGAQKFMEFLFDDALRADLAKDYY 300
                 ********99999998888766444443.6777777777888***************99999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2645.96
//
Query:       KIR60686.1  [L=357]
Description: spermidine/putrescine ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-32  112.6   0.0      4e-32  111.6   0.0    1.5  2  ABC_tran         ABC transporter
    3.1e-14   52.9   3.7    3.2e-13   49.7   0.8    2.9  2  TOBE_2           TOBE domain
    1.7e-06   28.1   0.0     0.0012   18.8   0.0    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
  ------ inclusion threshold ------
      0.014   15.7   3.5      0.064   13.6   0.5    2.6  2  TOBE             TOBE domain
      0.023   15.0   0.1      0.078   13.2   0.0    1.8  2  AAA_22           AAA domain
      0.026   14.9   0.5       0.05   14.0   0.4    1.7  1  AAA_16           AAA ATPase domain
      0.027   14.4   0.0      0.039   13.9   0.0    1.2  1  Rad17            Rad17 P-loop domain
       0.03   14.7   0.2      0.083   13.3   0.1    1.8  2  AAA              ATPase family associated with various cellul
      0.036   14.6   0.7      0.036   14.6   0.7    3.2  5  CysA_C_terminal  CysA C-terminal regulatory domain
      0.086   12.7   0.1       0.22   11.4   0.1    1.6  1  Rop              Rop protein
      0.095   12.9   0.1        1.4    9.2   0.1    2.3  1  SbcCD_C          Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.0   2.5e-35     4e-32       3     136 ..      24     164 ..      22     165 .. 0.98
   2 ?   -3.2   0.0         7   1.1e+04      54      70 ..     172     188 ..     167     217 .. 0.64

  Alignments for each domain:
  == domain 1  score: 111.6 bits;  conditional E-value: 2.5e-35
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeieka 88 
                 +v++++ +ge   ++G++G+GK+t l+++ag + pt+G+i++  +d+++  ++  ++  g+++q+  lfp+l+v++n             es++++e+a
  KIR60686.1  24 DVDITIAAGEFFTLLGPSGCGKTTTLRMVAGFYFPTSGRIRFGTEDVTR--RPPNKRDTGMVFQNYALFPHLSVAQNvayglkirkvgrvESKRRVEEA 120
                 899**********************************************..9999******************************************** PP

                 HHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  89 lsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 l ++ l +  d+++     +LSgGq+qrvalaral+ +pk lllDEp 
  KIR60686.1 121 LGQVHLAGYGDRRI----DELSGGQQQRVALARALVIRPKTLLLDEPL 164
                 **************....*****************************7 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7
                 HHHCCHCEEEE-SS--S CS
                 xxxxxxxxxxxxxxxxx RF
    ABC_tran  54 leslrkeigvlpqepql 70 
                 +e++r ei+ ++qe+  
  KIR60686.1 172 REETRTEIRRIQQEAGT 188
                 56667777777777443 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.017        27      30      67 ..     249     284 ..     241     285 .. 0.83
   2 !   49.7   0.8   1.9e-16   3.2e-13       1      75 [.     283     354 ..     283     355 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.017
      TOBE_2  30 Gsstryv.velaggqlvvvrqpnadrdsalapGdtVels 67 
                 G++ r+v v l+gg ++ v  p+ +    l+ G+t ++s
  KIR60686.1 249 GATERTVtVGLPGGGEIDVPAPADH---GLRQGETAQVS 284
                 55555554********999999999...9******9998 PP

  == domain 2  score: 49.7 bits;  conditional E-value: 1.9e-16
      TOBE_2   1 laiRPEklrlaaagganglsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswdpddavv 75 
                 +++RPE++ l + + a++l+G+V ++e+ G  t +vv++ag++ +v+++++ +    +a+Gd+V+l+++ d+++v
  KIR60686.1 283 VSVRPEHIGLTSTTEAGALPGRVAELEFTGMATNLVVDTAGERMQVAAVDVPA---GIAVGDQVGLRLNRDRMWV 354
                 79********6333357************************************...9**************9987 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0019       3.1       2      43 ..      35      69 ..      34      90 .. 0.67
   2 !   18.8   0.0   7.2e-07    0.0012     220     298 ..     120     196 ..      89     202 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0019
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggir 43
                  l Gp g+GK++ L+   ++ +        t+ + ++g+++
  KIR60686.1 35 FTLLGPSGCGKTTTLRMVAGFYF-------PTSGRIRFGTED 69
                6799************9988754.......333333333333 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 7.2e-07
      AAA_21 220 gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQv.iltTHS 298
                  + +++  +++++ ++elS G+++  al+ al  ++   ++ll+DEp ++L+ kl ++  + +++ +++ +   i +TH+
  KIR60686.1 120 ALGQVHLAGYGDRRIDELSGGQQQRVALARALVIRP---KTLLLDEPLSNLDAKLREETRTEIRRIQQEAGTTgIYVTHD 196
                 666667778899999**********9********99...88****************99999977777555555999998 PP

>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.16   2.5e+02      19      60 ..     251     288 ..     242     291 .. 0.74
   2 ?   13.6   0.5   3.9e-05     0.064       4      57 ..     298     347 ..     295     352 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.16
        TOBE  19 seveVrvdlgggatLtArvtrrsaeeLgLapGeeVfalikaa 60 
                  e +V+v l+gg ++ +  + ++    gL+ Ge++ +++ ++
  KIR60686.1 251 TERTVTVGLPGGGEIDVPAPADH----GLRQGETAQVSVRPE 288
                 67789999999995555555333....466999999999887 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.9e-05
        TOBE   4 rNqlpgtVvvveplgseveVrvdlgggatLtArvtrrsaeeLgLapGeeVfali 57 
                  ++lpg+V ++e++g  + + vd++g+  +++    +  +   +a+G++V +++
  KIR60686.1 298 AGALPGRVAELEFTGMATNLVVDTAGER-MQVAA-VDVPAG--IAVGDQVGLRL 347
                 589*************************.77776.566666..88999997765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.8e-05     0.078       7      26 ..      34      53 ..      30      90 .. 0.91
   2 ?   -0.9   0.0       1.1   1.9e+03      87     120 ..     147     185 ..      91     201 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.8e-05
      AAA_22  7 ilvvtGesGtGKTtllrrll 26
                + ++ G+sG+GKTt+lr+++
  KIR60686.1 34 FFTLLGPSGCGKTTTLRMVA 53
                67899************987 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.1
      AAA_22  87 rarav...ielliiDEaqh.lr...seealeeLrsllnlsr 120
                  ara    ++ l++DE    l+   +ee  +e+r+++   +
  KIR60686.1 147 LARALvirPKTLLLDEPLSnLDaklREETRTEIRRIQQ--E 185
                 22222344446777763333544334555555655555..4 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4   3.1e-05      0.05      22      46 ..      32      54 ..      13     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.1e-05
      AAA_16 22 grpelvllsGesGvGKsslvrellr 46
                g  e   l G+sG+GK++ +r+++ 
  KIR60686.1 32 G--EFFTLLGPSGCGKTTTLRMVAG 54
                3..67889*************9984 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.4e-05     0.039      49      68 ..      36      55 ..      26      97 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.4e-05
       Rad17 49 LisGPsGCgkstvvkvLske 68
                 + GPsGCgk+t++++++  
  KIR60686.1 36 TLLGPSGCGKTTTLRMVAGF 55
                578************98865 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   5.1e-05     0.083       3      20 ..      37      54 ..      35      69 .. 0.90
   2 ?   -2.1   0.0       2.9   4.7e+03      32      50 ..     165     183 ..     132     209 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.1e-05
                EESSTTSSHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavak 20
                l Gp G+GKT++ + va 
  KIR60686.1 37 LLGPSGCGKTTTLRMVAG 54
                89**************96 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.9
                 TTCSSSSTTHHHHHHHHHH CS
         AAA  32 sellskyvgesekkirelf 50 
                 s+l  k+ +e+  +ir + 
  KIR60686.1 165 SNLDAKLREETRTEIRRIQ 183
                 3333334444444444444 PP

>> CysA_C_terminal  CysA C-terminal regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       8.8   1.4e+04      10      18 ..      61      69 ..      60      71 .. 0.77
   2 ?   -3.2   0.1       8.5   1.4e+04      10      31 ..     122     144 ..     120     146 .. 0.56
   3 ?   -1.5   0.0       2.5   4.1e+03      20      35 ..     244     258 ..     241     259 .. 0.74
   4 ?   14.6   0.7   2.2e-05     0.036      15      42 ..     263     291 ..     261     292 .. 0.86
   5 ?   -3.2   0.1       8.1   1.3e+04      17      30 ..     329     341 ..     325     343 .. 0.60

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8.8
  CysA_C_terminal 10 GklriGgla 18
                     G++r+G  +
       KIR60686.1 61 GRIRFGTED 69
                     999999765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.5
  CysA_C_terminal  10 GklriGglalp.vPelagadgqe 31 
                      G+++++g+    + el g ++q+
       KIR60686.1 122 GQVHLAGYGDRrIDELSGGQQQR 144
                      66777664333355566665555 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.5
  CysA_C_terminal  20 pvPelagadgqevvay 35 
                       +P  +ga ++ v+++
       KIR60686.1 244 TLP-VQGATERTVTVG 258
                      455.468889999998 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 2.2e-05
  CysA_C_terminal  15 GglalpvP.elagadgqevvayVRPhDle 42 
                      G++++p+P +++ ++g+ +++ VRP+++ 
       KIR60686.1 263 GEIDVPAPaDHGLRQGETAQVSVRPEHIG 291
                      67889999888888*************96 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 8.1
  CysA_C_terminal  17 lalpvPelagadgq 30 
                      +a++vP ++ a g+
       KIR60686.1 329 AAVDVP-AGIAVGD 341
                      578888.3444555 PP

>> Rop  Rop protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00013      0.22       3      31 ..     141     169 ..     140     175 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
         Rop   3 KQektALnmAkFIksQsLlLLeKLneLdl 31 
                  Q++ AL  A  I+  +LlL e L +Ld+
  KIR60686.1 141 QQQRVALARALVIRPKTLLLDEPLSNLDA 169
                 69*************************97 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00088       1.4      27      83 ..     131     174 ..     105     180 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00088
     SbcCD_C  27 srssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiat 83 
                 +r++ +lSGG++q    +ala a    +        ++++++LDE  s+lD++ +++
  KIR60686.1 131 DRRIDELSGGQQQR---VALARA----LV------IRPKTLLLDEPLSNLDAKLREE 174
                 57778888888843...334433....33......357899**********998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2254.13
//
Query:       KIR60687.1  [L=320]
Description: 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-37  129.4   9.7    2.7e-37  129.1   9.7    1.1  1  Amidohydro_2  Amidohydrolase


Domain annotation for each model (and alignments):
>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   9.7   1.5e-41   2.7e-37       2     291 .]      11     315 ..      10     315 .. 0.84

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 1.5e-41
                   EEEEEE..SHHH...........................CCCCCCGGCTSCCCHHHHHCHHTSSECCCEHCHHHHHHHHTSHHCHHHHHHHHHHHHH CS
  Amidohydro_2   2 DvHaHllppeaa...........................irddgepngfdpeerlafmkragvdpqlaspeallvlnaaagiaravivaalcrgann 71 
                   D H+H+  + ++                           + ++++++++  ++ ++ ++r++          + ++    +++rav+v++ +   n+
    KIR60687.1  11 DFHLHFRIAADPtiqacehaagmhpggeheravraagsaPYAAKWRRAWAFADPEPPAQRWEDEAD-----RWAEELRRVDVRRAVFVTGGG---ND 99 
                   777776333333777777777777777777777777777666666666666666666666655555.....88888888899**********...99 PP

                   HHHHHHHHHCTTCBECEEECTSSHCHHHHHHHHHHHHTTECEEEEESSTTTCCTTTCGGHHHHHHHHHHHT-EEEEE....CHHHCHHHHHHHHHHH CS
  Amidohydro_2  72 rvlaeaakrpdrfvggaavvpldpedaaaeleraveelgfkGvrlnphvggddllgdrldrpifealeelglpvdihtGpspewlfggpqettraiq 168
                    v++ ++++pd ++g+a+ +p   + aaaelerav e+g++G++l      ++l++++ld p+++ +++lg+pv ih+G    ++  g   + r+  
    KIR60687.1 100 TVADVVDRHPDLLLGLAHHDP-YSPGAAAELERAVTERGLRGLKLFAPLLRGPLDHADLD-PLWATAQRLGVPVLIHIG---HYGSAGGLSFGRHGG 191
                   999999999999999988888.8889**********************************.******************...444444455899999 PP

                   HHHHCCHHHHCTTSEEEESGGGTTTTCHHHHHHHHHHHHHCCEEECCGHHHSSEEECCHHCHHHHHHHHHHH-GGGEEEE--BTSTTSTSCTTHHHH CS
  Amidohydro_2 169 plllsgvarkfPnlkivlaHgGgpserlraalellarrpnvyvklsglytellyfdspladppalarlieavgpdrilfGsDyPhptleaepealal 265
                   p +l+++ar+fP+l +v+ H+G+    ++++l +++ +pn++v++sg  + + +    l+    ++r  e++gp ri++GsD  + +++    +l++
    KIR60687.1 192 PDELARMARRFPELAVVVPHFGVQ--HVQDLLFAAWGCPNIHVDTSGSNQWVRWMPYKLTLEDLFRRCYETIGPHRIVYGSDSSWFPRGYVTRYLDD 286
                   ************************..*********************44424444444555666************************999999999 PP

                   CHHHHH...SSHHHHHHHHTHHHHHHCTB CS
  Amidohydro_2 266 ldlval...lsdeerekilggNAarlygl 291
                     +v++   l+d+ +++i+ gNA+rl+gl
    KIR60687.1 287 QLRVCHelgLPDDHLRAIFAGNAERLLGL 315
                   999999999******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2375.30
//
Query:       KIR60688.1  [L=485]
Description: argininosuccinate lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-32  111.5   0.0    7.7e-32  110.9   0.0    1.2  1  Lyase_1   Lyase
    2.7e-09   37.6   1.7    2.7e-09   37.6   1.7    2.6  3  ASL_C2    Argininosuccinate lyase C-terminal
  ------ inclusion threshold ------
       0.42   10.0   5.7       0.83    9.0   5.7    1.4  1  CobT      Cobalamin biosynthesis protein CobT


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   0.0   1.3e-35   7.7e-32      42     307 ..      43     290 ..      10     293 .. 0.85

  Alignments for each domain:
  == domain 1  score: 110.9 bits;  conditional E-value: 1.3e-35
                 TTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTTHSSGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHH CS
     Lyase_1  42 anvdlkeeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellgekvepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLid 140
                  +++++e  a  +++l e+++  + d++ + +   e++   ++ +l    g     + + + +v +++S+nD  +  +r++l+++l   +l+ +     
  KIR60688.1  43 QGLIPAERGARLLRGLAELRA--DTDPAPPFDGTFEDTYYLLEKRLAAACG-----VPASELDVQMARSRNDLDAGVFRMLLRDQLVG-VLDRVLATGA 133
                 555556666666666666666..4455556666666666666666666666.....7788899***********************76.6666666666 PP

                 HHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEETTTTTTTSSTTTSCCTHHHHHHHHHHHHHCSTEESSSHHHHH CS
     Lyase_1 141 alkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvellgggtavgtglnadpefaelvakelakvtglpvkapnsfeav 239
                 +  + a  ++dvv  G+Th ++A+P+t+g+ l++yaeal  +   + +l + l+v++lg+ + +gt l++dp    +va+ l+ ++g      ns eav
  KIR60688.1 134 TALAAADRYADVVITGYTHRRPAQPTTIGHALAGYAEALAGEAAAYADLIDALNVSPLGSCAFAGTDLDIDPA---RVAELLG-FAG---LVTNSYEAV 225
                 666789*******************************************************************...*******.999...99******* PP

                 HC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTSTTTEBTHHHHHHHHHH CS
     Lyase_1 240 sdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiMPgKvNPvqlElltgva 307
                 +  D++v +    +   +   ++a+ l+   s   + v+     ++ GSSiMP+K+NPv lE l + a
  KIR60688.1 226 AGADHLVRVGTLNAQALATGARLARTLMDWLS--WRWVTTPGDFTQ-GSSIMPQKRNPVVLEHLVSYA 290
                 ********9999888888899******99999..9**********9.***************987766 PP

>> ASL_C2  Argininosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         3   1.8e+04      33      59 ..      88     113 ..      85     117 .. 0.60
   2 ?   -2.8   0.1       1.9   1.1e+04       8      15 ..     228     235 ..     223     249 .. 0.81
   3 !   37.6   1.7   4.6e-13   2.7e-09       3      50 ..     361     403 ..     360     431 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3
                 HHTT--GGG--HHHHHHH-TT.--GGGG CS
      ASL_C2  33 eekgkeleeltleelkeispl.leedve 59 
                  + g++++el+++  +  s+  l++ v+
  KIR60688.1  88 AACGVPASELDVQMAR--SRNdLDAGVF 113
                 4457778888888777..3334555555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.9
                 HHHHHHCT CS
      ASL_C2   8 ADyLvrkG 15 
                 AD+Lvr G
  KIR60688.1 228 ADHLVRVG 235
                 99999876 PP

  == domain 3  score: 37.6 bits;  conditional E-value: 4.6e-13
                 THHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHTT--GGG--HHHHHHH CS
      ASL_C2   3 tATdlADyLvrkGlpFReAHeivgravrlaeekgkeleeltleelkei 50 
                 t T  AD+L+r+G+pFR AH +vgr+vr+      ++++ t e ++++
  KIR60688.1 361 TTTAAADALTRHGVPFRAAHSVVGRLVRAG-----APDTWTAEGVRAA 403
                 7899************************93.....3444444444433 PP

>> CobT  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.7   0.00014      0.83       8      86 ..     401     479 ..     396     483 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00014
        CobT   8 kralasavralagdpeleVafsadepglsgervrlpepsrklsaeevaavRGaaDslALrlrhHDakvharlapegkaA 86 
                 + a ++++  l +d+  +   +a +p+l  +r+++  p r + +++vaa+RG+ D +A rl+   a+++a+ a+ ++ A
  KIR60688.1 401 RAAAQGVTDRLDDDAIADLLAAAVRPELVLDRAQVDGPGRCAVRNQVAALRGHFDTVAGRLAAVRARLAAADAELDAVA 479
                 56666666666666666677778899999**************************************999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3391.15
//
Query:       KIR60689.1  [L=211]
Description: hypothetical protein TK50_22695 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1641.57
//
Query:       KIR60690.1  [L=238]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-15   55.7   0.0    7.1e-15   55.2   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    6.6e-15   55.5   0.1    1.8e-14   54.2   0.0    1.7  2  Methyltransf_11  Methyltransferase domain
    5.8e-10   39.7   0.0    1.2e-09   38.8   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
      2e-05   25.3   0.0    4.8e-05   24.0   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
       0.02   14.7   0.0      0.025   14.4   0.0    1.2  1  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0     2e-18   7.1e-15       3     164 ..      20     173 ..      17     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 2e-18
  Methyltransf_23   3 aqreeelsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.....kakkaqkdqfdeqeaaepqgkfdlIvlrev 91 
                      ++r+  l+++l rl+++   +gr Ld+G++ G +++vlr++g++ ++ + spe  + a+              +d+   + p+++  l+++++ 
       KIR60690.1  20 RERRVLLARALRRLAATGHVPGRALDVGAAGGGNTRVLRAHGWQPVALEYSPEGAGVARergldV------IRADARHLPLPSASLGLVTAFDI 107
                      45667899*********************************************999885443321......222233455699*********** PP

  Methyltransf_23  92 lehvpdppellrqiatllkpgGylllseplaslkedrllldwlylvpagrhisffsarslkelleeaGlevve 164
                      leh++  + + + i++ l+pgG++l+ +p+       ++  w + + a +h++ +++ sl+  +e+aGl v+e
       KIR60690.1 108 LEHFDEDHLAAAEIRRTLRPGGVALIAVPA-------DMALWSAHDVAVGHVRRYDRASLRAVVEKAGLVVDE 173
                      *****888889999999************4.......355788888899********************9986 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.6   5.8e+03      72      93 ..      16      38 ..      11      39 .. 0.76
   2 !   54.2   0.0   4.9e-18   1.8e-14       1      95 [.      44     132 ..      44     133 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.6
                     CC-.CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11 72 hhv.edpekalkeiaRvLkpgGl 93
                     h++  +++ +l+ + R L   G+
       KIR60690.1 16 HWWyRERRVLLARALRRLAATGH 38
                     56668888899999998887776 PP

  == domain 2  score: 54.2 bits;  conditional E-value: 4.9e-18
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                      LdvG+ +G +++ l  +g + v++++s+e   +a+e++      +++++ada++lp++++s  lv+++  l+h+++ + a +ei+R L+pgG+ 
       KIR60690.1  44 LDVGAAGGGNTRVLRAHGWQPVALEYSPEGAGVARERG------LDVIRADARHLPLPSASLGLVTAFDILEHFDEDHLAAAEIRRTLRPGGVA 131
                      8*********************************8887......5679********************************************97 PP

                      E CS
  Methyltransf_11  95 v 95 
                      +
       KIR60690.1 132 L 132
                      6 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   3.3e-13   1.2e-09       2      97 .]      44     129 ..      43     129 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 3.3e-13
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkp 95 
                      Ld+G+  G +t+ l +++   + +++++s+e    arer       ++++++da++lp++++s  lv+++  l+h+++++   a +ei+r L+p
       KIR60690.1  44 LDVGAAGGGNTRVLRAHG--WQPVALEYSPEGAGVARERG------LDVIRADARHLPLPSASLGLVTAFDILEHFDEDH--LAAAEIRRTLRP 127
                      9**************995..*******************9......9**********************655****9665..579********* PP

                      EE CS
  Methyltransf_25  96 gG 97 
                      gG
       KIR60690.1 128 GG 129
                      *9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.3e-08   4.8e-05       1      98 [.      44     130 ..      44     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.3e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+  G ++r+l+++  +++ +++++sp+    a+e+  + ++ ++ ++ l            s  lv+a++ l+h+++ + + ++ir+ L+
       KIR60690.1  44 LDVGAAGGGNTRVLRAH--GWQPVALEYSPEGAGVARERGLDVIRADARHLPLPSA---------SLGLVTAFDILEHFDEDHLAAAEIRRTLR 126
                      8****************..**************99999988888644444444433.........777************************** PP

  Methyltransf_12  95 pgGr 98 
                      pgG+
       KIR60690.1 127 PGGV 130
                      ***7 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     7e-06     0.025       6     114 ..      42     141 ..      38     192 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7e-06
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeier 99 
                      r lD+G++ G  t +l      + + v +++s+e   +Are+    gld   + ++d+ +l+  l  ++  l++++++l ++ +   +  ei r
       KIR60690.1  42 RALDVGAAGGGNTRVLR---AHGWQPVALEYSPEGAGVARER----GLD---VIRADARHLP--LPSASLGLVTAFDILEHFDEDHLAAAEIRR 123
                      67999999999999999...346779999*****99999997....665...999*******..999*************************** PP

  Methyltransf_31 100 vlkpggilliedpr...l 114
                       l+pgg+ li+ p    l
       KIR60690.1 124 TLRPGGVALIAVPAdmaL 141
                      *********998885552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1766.16
//
Query:       KIR60691.1  [L=59]
Description: hypothetical protein TK50_22705 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.46
# Mc/sec: 389.62
//
Query:       KIR60692.1  [L=257]
Description: hypothetical protein TK50_22715 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-12   47.8   1.6    1.4e-12   47.8   1.6    2.2  3  HTH_31    Helix-turn-helix domain
    6.5e-09   35.7   0.0    1.3e-08   34.8   0.0    1.4  1  HTH_3     Helix-turn-helix
      8e-09   35.4   0.0    1.7e-08   34.4   0.0    1.5  1  HTH_19    Helix-turn-helix domain
     0.0088   15.9   0.0      0.023   14.6   0.0    1.7  1  HTH_25    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   1.6     3e-16   1.4e-12       2      57 ..       5      59 ..       5      73 .. 0.94
   2 ?   -3.0   0.1       2.3     1e+04      37      53 ..      96     111 ..      84     117 .. 0.58
   3 ?   -2.8   0.1       1.8   8.3e+03      51      53 ..     233     235 ..     214     247 .. 0.59

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 3e-16
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                L+  L++ R ++GL+q++vAe+++vs s +   E+Grr +p+p++ ++l ++lg+ 
  KIR60692.1  5 LALVLKHERGKRGLTQDQVAEAVHVSGSLIAMFETGRR-VPQPDTARRLDELLGTG 59
                7889**********************************.7**************95 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.3
      HTH_31  37 Grrgrpspavlealara 53 
                 +++ +p + + ea+ara
  KIR60692.1  96 ATI-VPGLLQTEAYARA 111
                 444.3544455555554 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.8
      HTH_31  51 ara 53 
                  +a
  KIR60692.1 233 WEA 235
                 222 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   2.8e-12   1.3e-08       1      50 [.       9      58 ..       9      60 .. 0.96

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 2.8e-12
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTS CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgv 50
                lk  R ++gl+q ++Ae++ vs s i++ E G+r P ++t+ +l + Lg+
  KIR60692.1  9 LKHERGKRGLTQDQVAEAVHVSGSLIAMFETGRRVPQPDTARRLDELLGT 58
                677899*****************************************996 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   3.7e-12   1.7e-08       8      53 ..      13      57 ..       8      58 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 3.7e-12
      HTH_19  8 ReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealg 53
                R ++gltq+++ae +++s s i+++E+g++ vp +++ +++ e+lg
  KIR60692.1 13 RGKRGLTQDQVAEAVHVSGSLIAMFETGRR-VPQPDTARRLDELLG 57
                99****************************.*************99 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.1e-06     0.023       2      34 ..       9      41 ..       8      50 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.1e-06
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT- CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEedd 34
                L+ +R +rgl+ ++va+  +++ +++  +E ++
  KIR60692.1  9 LKHERGKRGLTQDQVAEAVHVSGSLIAMFETGR 41
                899***********************9999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1699.61
//
Query:       KIR60693.1  [L=63]
Description: regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-19   68.5   0.4    4.1e-19   68.4   0.4    1.0  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.4   2.3e-23   4.1e-19       2      54 .]       7      60 ..       6      60 .. 0.90

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 2.3e-23
      DUF397  2 tWrKSsySgggggnCVEvaalpda......vavRDSkdpdgpvLtftpaewaaFlagvk 54
                +Wr  ++S+ +gg+CVEv     a      v vRDSk++d ++L+f p++w+aF+a ++
  KIR60693.1  7 RWRTATRSNTNGGECVEV-----AdnlpgvVLVRDSKARDAGTLAFAPSAWRAFVADLR 60
                7*****************.....444455689************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 525.42
//
Query:       KIR60694.1  [L=408]
Description: 3-oxoacyl-ACP synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-54  183.8   5.0    4.1e-54  183.8   5.0    1.7  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    6.2e-32  110.1   1.4    1.3e-31  109.0   1.4    1.6  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    1.1e-07   31.5   1.7    1.8e-07   30.8   0.3    2.0  2  Thiolase_N       Thiolase, N-terminal domain
  ------ inclusion threshold ------
       0.05   13.5   1.4        5.7    6.9   0.0    2.5  2  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.8   5.0   9.3e-58   4.1e-54       2     253 .]       4     246 ..       3     246 .. 0.92
   2 ?   -2.6   0.0      0.71   3.2e+03      93     114 ..     280     301 ..     279     343 .. 0.75

  Alignments for each domain:
  == domain 1  score: 183.8 bits;  conditional E-value: 9.3e-58
                    --EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..STTEGGTTSTHHHHHHHCTS-HHHHHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfldvddfdpeffgispreaeamdpqqrllleaaw 97 
                    ++v+++G+ga++P g dv ++w+++l+gr+++++l +   ++ ++  +p r+a++  +         d  + +++++ r   ++d+++ +++ aa+
     KIR60694.1   4 SDVVVTGLGATTPLGGDVASTWDAMLAGRSGVGPLTQ---EWAAQ--LPVRIAAQLAV---------DPSEVLDRVKMR---RLDRSEAIAIIAAR 82 
                    58*********************************94...33333..47999999999.........899999******...************** PP

                    HHHHHHTS-HHTCTTGGEEEEEEESSTHH....HHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHH CS
  ketoacyl-synt  98 ealedagltpeeldgsrvgvfiGvgagdy....aalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqsl 189
                    +a++dagl +  ldg+r +v +G+g+g      a+ + l+  g ++++sp++++++++n  a+ + ++lg+++ ++tv +AC++++ a+++ ++ +
     KIR60694.1  83 QAWADAGLADSGLDGERLAVSVGSGIGGAttllAQDDILEASG-PRRVSPHTIPMLMPNGPAAWVGLELGAKAGVHTVASACATGAEAIALGLDII 177
                    ***************************5523544444554444.9*************************************************** PP

                    HTTS-SEEEEEEEE---SHHHHHHHHHTT.BB-TT.SGGGTTBTTB...-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 190 rsgeadvalaGGvellltpeavagfsaag.llspd.grckafdpka...dGfvlGEGvGavvLkrleda 253
                    rsg+adv++aGG+e+ +++  +agf++++ +++++ ++++a++p++   dGfvlGEG+G++vL+r+e+a
     KIR60694.1 178 RSGRADVVVAGGTEAVIHALPIAGFASMRaMSTRNdEPERASRPWDtgrDGFVLGEGAGVLVLERAEHA 246
                    *****************************9999999******************************987 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.71
                    HHHHHHHHHHHTS-HHTCTTGG CS
  ketoacyl-synt  93 leaawealedagltpeeldgsr 114
                    ++a ++a++da +  e++ + +
     KIR60694.1 280 IRAIKKAIADADIAREDIVHVN 301
                    6788999999999998886554 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   1.4     3e-35   1.3e-31       1     117 [.     254     365 ..     254     366 .. 0.98

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 3e-35
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      ya ++g++++sd++++  ++ +ge++ rai+ka+a+a+++ ed+ +v+ah+t+tp+gD  E+ al++++g++       ++++Ks++GHl++Aa
       KIR60694.1 254 YARLAGAGITSDAYDIVQPHAEGEGAIRAIKKAIADADIAREDIVHVNAHATSTPVGDMLEIGALRAALGDHP-----VLTATKSMTGHLLGAA 342
                      899********************************************************************98.....79************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      G++e i+++l++++gv+ppt+nl
       KIR60694.1 343 GALESIATILSIRDGVVPPTINL 365
                      **********************8 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.3     4e-11   1.8e-07      68     118 ..     146     196 ..     140     219 .. 0.84
   2 ?   -1.9   0.1      0.39   1.7e+03      29      48 ..     281     300 ..     279     308 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 4e-11
                 HHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS CS
  Thiolase_N  68 lkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsna 118
                 + +++  ++ ++tv  +c+ g++a+al+ + i++g+advvvagG+E   +a
  KIR60694.1 146 VGLELGAKAGVHTVASACATGAEAIALGLDIIRSGRADVVVAGGTEAVIHA 196
                 56677789999***********************************97665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.39
                 HHHHHHHHHHTS-GGGCCEE CS
  Thiolase_N  29 ealkallekagvdpeevdev 48 
                 +a+k+++++a ++ e++ +v
  KIR60694.1 281 RAIKKAIADADIAREDIVHV 300
                 5899*********9999887 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.5     0.006        27       4      35 ..     160     191 ..     158     197 .. 0.82
   2 ?    6.9   0.0    0.0013       5.7      43      67 ..     222     246 ..     214     257 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.006
                  E-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEE CS
  ACP_syn_III   4 naaCsgfvyalsvAdaliesgaakrvLvigae 35 
                   +aC++   a+++  ++i+sg+a  v+  g+e
   KIR60694.1 160 ASACATGAEAIALGLDIIRSGRADVVVAGGTE 191
                  689******************88766554444 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0013
                  TTTHHHHTTB-EEEEEEEEEEESSS CS
  ACP_syn_III  43 wkdrstavlfGDGAgAvvleaseee 67 
                  w+  +  +++G GAg +vle+ e+ 
   KIR60694.1 222 WDTGRDGFVLGEGAGVLVLERAEHA 246
                  444667799***********98644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3126.29
//
Query:       KIR60695.1  [L=79]
Description: acyl carrier protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-14   53.8   0.1    2.1e-14   53.6   0.1    1.0  1  PP-binding     Phosphopantetheine attachment site
    0.00087   19.5   0.3    0.00097   19.3   0.3    1.1  1  PP-binding_2   Acyl-carrier
     0.0055   16.8   0.0     0.0058   16.8   0.0    1.2  1  Ribosomal_L50  Ribosomal subunit 39S
  ------ inclusion threshold ------
      0.012   15.5   0.0       0.69    9.9   0.0    2.2  2  DEK_C          DEK C terminal domain


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.1   4.6e-18   2.1e-14       3      67 .]      10      75 ..       8      75 .. 0.95

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 4.6e-18
  PP-binding  3 lrelvaevlgvpleeidpdtdlf.dlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67
                l e+++ev gv++++++   ++  dl +DSl++ve+++a ee+fgv+ip+ ++ +++t+++ + y+
  KIR60695.1 10 LAEILEEVAGVNPDDVAEGKSFTdDLDVDSLSMVEVVVAAEEKFGVKIPDNEVQNLKTVGDAVSYI 75
                899********************77****************************88******99887 PP

>> PP-binding_2  Acyl-carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.3   2.2e-07   0.00097      22      85 ..      13      76 ..       4      79 .] 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.2e-07
  PP-binding_2 22 vlrkgekvtpsskleelrtredrlwdgldtvefvedveelfdvivsdevadnfetlqeiadlvv 85
                  +l++   v p    e     +d   d+l  ve v   ee f v ++d+ ++n++t+ +   ++ 
    KIR60695.1 13 ILEEVAGVNPDDVAEGKSFTDDLDVDSLSMVEVVVAAEEKFGVKIPDNEVQNLKTVGDAVSYIE 76
                  5666666677666666666778889******************************988777665 PP

>> Ribosomal_L50  Ribosomal subunit 39S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.3e-06    0.0058      39      76 ..      40      77 ..       3      79 .] 0.76

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.3e-06
  Ribosomal_L50 39 elKFaflkrlqqllgheipDykltklhtvkdlveylee 76
                       +++    ++ g  ipD ++ +l+tv d+v+y+e 
     KIR60695.1 40 LSMVEVVVAAEEKFGVKIPDNEVQNLKTVGDAVSYIEA 77
                   5566777788999**********************964 PP

>> DEK_C  DEK C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.014        62       2      17 ..       2      17 ..       1      22 [. 0.88
   2 ?    9.9   0.0   0.00015      0.69      18      38 ..      36      56 ..      31      60 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.014
       DEK_C  2 sdeeirkaireiLrea 17
                + +ei++ + eiL e+
  KIR60695.1  2 TRDEITAGLAEILEEV 17
                789**********986 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00015
       DEK_C 18 DLdtvTkkkvReqLeeklgvd 38
                D d++++ +v+ ++eek+gv 
  KIR60695.1 36 DVDSLSMVEVVVAAEEKFGVK 56
                8899**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 584.12
//
Query:       KIR60696.1  [L=314]
Description: 3-oxoacyl-ACP synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-30  105.5   0.0    3.8e-29  100.7   0.0    2.6  2  ACP_syn_III_C    3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    1.1e-27   95.7   0.7    4.5e-27   93.7   0.7    2.0  1  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    1.8e-08   34.1   2.0    2.6e-08   33.6   0.7    1.8  2  Thiolase_N       Thiolase, N-terminal domain
  ------ inclusion threshold ------
      0.014   14.8   0.0      0.019   14.3   0.0    1.2  1  FAE1_CUT1_RppA   FAE1/Type III polyketide synthase-like prote
      0.046   13.3   7.4      0.083   12.4   5.4    2.3  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
       0.05   13.0   3.5       0.55    9.6   3.2    2.5  2  Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal 


Domain annotation for each model (and alignments):
>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.074   2.2e+02       1      16 [.      63      78 ..      63     101 .. 0.90
   2 !  100.7   0.0   1.3e-32   3.8e-29       1      89 [.     224     312 ..     224     313 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.074
                   HHHTT--GGG-SEEEE CS
  ACP_syn_III_C  1 Lekagltpedidalvp 16
                   L+++glt++did++v 
     KIR60696.1 63 LANSGLTAADIDLVVV 78
                   7899*********997 PP

  == domain 2  score: 100.7 bits;  conditional E-value: 1.3e-32
                    HHHTT--GGG-SEEEE-SSSHHHHHHHHHHHT--GGGB--THHHH-B-GGGHHHHHHHHHHHTTSS-TT-EEEEEEEETTTEEEEEEEE CS
  ACP_syn_III_C   1 LekagltpedidalvphqanlriidavakklglpeekvvvnldeyGntsaasiplaLdeaveegklkpgdlvllvgfGaGltwgaallr 89 
                    +e+ag++p+++ a+vphqan riid +ak+lg+p+  +++++ e Gntsaas+plaL++++e++++ +g  vll+gfG+Glt++++++r
     KIR60696.1 224 CERAGVAPSELAAFVPHQANSRIIDGIAKRLGIPDAIIAKDIVESGNTSAASVPLALSKLIERREVPSGAPVLLFGFGGGLTYAGQVVR 312
                    789************************************************************************************98 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.7   0.7   1.5e-30   4.5e-27       1      72 [.     106     178 ..     106     185 .. 0.90

  Alignments for each domain:
  == domain 1  score: 93.7 bits;  conditional E-value: 1.5e-30
                  EEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGCS-TTTHHHHTTB-EEEEEEEEEEE.SSSSCEEE CS
  ACP_syn_III   1 fDlnaaCsgfvyalsvAdaliesgaakrvLvigaetlskilDwkdrstavlfGDGAgAvvleas.eeegaril 72 
                  +D+n+aCsgf yal ++d++i++ga ++++vigae+ls+++Dw+drst+++fGDGAgA+v++a+ e e a++ 
   KIR60696.1 106 YDINTACSGFAYALGTVDHAIRAGASRNAIVIGAEKLSDFTDWTDRSTCIIFGDGAGAAVVTATaEGEPAGVG 178
                  7**************************************************************9644444455 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.7   8.7e-12   2.6e-08      19     119 ..      47     146 ..      35     169 .. 0.92
   2 ?   -1.2   0.0      0.34     1e+03      58      96 ..     242     280 ..     199     286 .. 0.64

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 8.7e-12
                 TTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N  19 kdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117
                  d ++++++a+a+ ++l++ g++++++d v+v++  +     n+a  +a k+gi     a  +n +cs  + a+ ++  +i+ag++  ++++G+E++s+
  KIR60696.1  47 GDETVSDMAAAAAGKALANSGLTAADIDLVVVATCTSIDRSPNVACRVAAKLGI-TAPGAYDINTACSGFAYALGTVDHAIRAGASRNAIVIGAEKLSD 144
                 578899************************************************.6667999************************************8 PP

                 S- CS
  Thiolase_N 118 ap 119
                  +
  KIR60696.1 145 FT 146
                 65 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.34
                 STSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHH CS
  Thiolase_N  58 egqniarqaalkagipeevpavtvnkvcsSglkavalaa 96 
                 +++ i   +a ++gip+ ++a  + +    ++++v la 
  KIR60696.1 242 ANSRIIDGIAKRLGIPDAIIAKDIVESGNTSAASVPLAL 280
                 334455556777888888888888777777777776665 PP

>> FAE1_CUT1_RppA  FAE1/Type III polyketide synthase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   6.3e-06     0.019      83     177 ..      51     144 ..      30     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.3e-06
  FAE1_CUT1_RppA  83 aeevlfgavdellaktkvspkdidilvvn.cslfsptPslsamvvnryklredvksynLsgmGCsAglisidlaknllqvhkntlalvvstEnit 176
                     ++++  +a  + la+++++++did++vv+ c+    +P ++ +v  + ++     +y++    Cs    ++  + + +++     a+v+  E+++
      KIR60696.1  51 VSDMAAAAAGKALANSGLTAADIDLVVVAtCTSIDRSPNVACRVAAKLGITAP-GAYDINT-ACSGFAYALGTVDHAIRAGASRNAIVIGAEKLS 143
                     445666778899************99885389999**************9875.6788876.8*****************************998 PP

  FAE1_CUT1_RppA 177 l 177
                      
      KIR60696.1 144 D 144
                     5 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   5.4   2.8e-05     0.083     103     205 ..      38     142 ..      12     154 .. 0.71
   2 ?   -2.3   0.0      0.89   2.7e+03     237     248 ..     156     167 ..     145     171 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.8e-05
                    HTS-HHTCTTGGEEEEEEESSTHH....HHHHHHHHHTTGGGSCT.THHHHHSTTHHHHHHHHHHT--SS.EEEEESGGGHHHHHHHHHHHHHHTT CS
  ketoacyl-synt 103 agltpeeldgsrvgvfiGvgagdy....aalaaldedgsevkasp.kavgavlanviagrisyalglrGp.svtvdtACsSslvavhaavqslrsg 192
                     g+  +++ g+++   ++++a+ +    ++l+a d d +   +     ++  ++n +a+r++ +lg+++p ++ + tACs  + a+  + +++r+g
     KIR60696.1  38 VGIASRRIAGDETVSDMAAAAAGKalanSGLTAADIDLV--VVATcTSIDR-SPN-VACRVAAKLGITAPgAYDINTACSGFAYALGTVDHAIRAG 129
                    578888888888555555555533232233333332222..2222123333.444.688**********97899******9999999999****** PP

                    S-SEEEEEEEE-- CS
  ketoacyl-synt 193 eadvalaGGvell 205
                     +  a++ G+e l
     KIR60696.1 130 ASRNAIVIGAEKL 142
                    *********9965 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.89
                    -BB-EEEEEEEE CS
  ketoacyl-synt 237 vlGEGvGavvLk 248
                    ++G+G+Ga v+ 
     KIR60696.1 156 IFGDGAGAAVVT 167
                    789****99986 PP

>> Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.2   5.9e+02      15      35 ..       5      25 ..       2      38 .. 0.85
   2 ?    9.6   3.2   0.00018      0.55      94     223 ..      46     168 ..      34     170 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.2
  Chal_sti_synt_N 15 tllalGkalPeqvveqeklvd 35
                      +lalG+  P+++v+ +++++
       KIR60696.1  5 RILALGHYQPSRIVTNDDIAQ 25
                     69************9998875 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00018
  Chal_sti_synt_N  94 ivnaevlklgkeaalkalkewGrPkskithlvfvssseve.lPGadlklakklGlrpsvkrvmlyflGcygGatvlrlakdiaennkGarvlvv 186
                         + v ++++ aa kal + G  +++i  +v  + + ++  P     +a+klG+ +           c+g a +l +  d a     +r  +v
       KIR60696.1  46 AGDETVSDMAAAAAGKALANSGLTAADIDLVVVATCTSIDrSPNVACRVAAKLGITAPGA--YDINTACSGFAYALGTV-DHAIRAGASRNAIV 136
                      4567899**********************999998888752799**********987544..44577899999898876.55656666666655 PP

  Chal_sti_synt_N 187 aseitvlgfrgPskdrlddlvGaalfGdGaaaviiGa 223
                           +  f   ++          +fGdGa a+++ a
       KIR60696.1 137 IGAEKLSDFTDWTDR-----STCIIFGDGAGAAVVTA 168
                      555556666554433.....34567999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2203.26
//
Query:       KIR60697.1  [L=388]
Description: biotin attachment protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-15   57.0   0.2    3.1e-15   56.5   0.2    1.2  1  Acyl_transf_1  Acyl transferase domain
  ------ inclusion threshold ------
      0.083   12.7   0.0       0.16   11.8   0.0    1.5  1  Biotin_lipoyl  Biotin-requiring enzyme


Domain annotation for each model (and alignments):
>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.2   3.5e-19   3.1e-15      40     279 ..      37     277 ..       5     297 .. 0.81

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 3.5e-19
                    HT--HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHT..S-EECCEEC CS
  Acyl_transf_1  40 ygfsvldvlrnnpeglldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGElAaavvagalsseeallavvlrsrlmmqla..gpgdmaave 133
                    +g  + ++ + +   +++++  +qp L+a  + +ae+l    v+  + +GHS+GEl aa+ ag l +e a+  + +r+r m+ +    p +maav 
     KIR60697.1  37 AGVDLVHLGTTAGAEEIQDTARTQPLLVAAALLAAEHLPMHDVT--LTAGHSVGELGAAALAGVLPAETAITLAGVRGREMAAACaiEPTGMAAVL 130
                    56777777777777899*********************998776..789******************************99987667899****98 PP

                    S..HHHHHHH...TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHH CS
  Acyl_transf_1 134 l.aeeeeklr.cqddvvgavansprrvvisgsqealrelvervskegvgalvenvnvavhspqvdaiadalasaladiaprkpkvakisstsldes 227
                      ++ e  ++ +   +  a  n+ +++v++gs+  +++lv++   +  ++ + +v  a+h p++++++ ala   a i+p  p     s +   + 
     KIR60697.1 131 GgDTDEVLAAlDRHGLHAANRNGAGQIVAAGSTTGIDALVAEPPTKA-RVVRLKVAGAFHTPYMAPAEAALAGVAAGITPARPARILLSNLDGTAV 225
                    864444444459999****************************9999.888889999****************99999977765555555555554 PP

                    .HHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCC CS
  Acyl_transf_1 228 .serelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektl 279
                       rel+++  v+ + spvr +  ++ +a+ +   +ve++p  +l+  +++ l
     KIR60697.1 226 hHGRELVQR-LVRQVTSPVRWDLCMRTLADLGVTGVVELPPAGTLAGLIKREL 277
                    366777766.578899*************************999887777665 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.8e-05      0.16       3      73 .]     318     384 ..     316     384 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.8e-05
                    EEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl   3 iksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73 
                    +++P++G++      +    +G++ k gqv+  v +    +e++a++ G ++e l+  ++ v  g++la+i
     KIR60697.1 318 VTAPAPGVFQP----AQGLTEGQALKIGQVIGHVVTGRGPVEVTAHDGGPLTEWLAHHDAPVAPGQPLARI 384
                    67777777777....367789************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2987.44
//
Query:       KIR60698.1  [L=411]
Description: PucR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-22   77.7   1.2    7.2e-22   77.0   0.2    2.0  2  HTH_30    PucR C-terminal helix-turn-helix domain
    3.9e-12   46.5   1.4    3.9e-12   46.5   1.4    3.2  3  GGDEF_2   GGDEF-like domain
  ------ inclusion threshold ------
       0.02   14.7   0.0       0.13   12.1   0.0    2.4  2  HTH_23    Homeodomain-like domain
       0.04   13.7   0.0       0.13   12.0   0.0    1.9  1  HTH_8     Bacterial regulatory protein, Fis family
      0.041   14.0   0.1       0.21   11.8   0.0    2.3  2  HTH_28    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         2     7e+03      33      41 ..      13      21 ..      11      31 .. 0.66
   2 !   77.0   0.2     2e-25   7.2e-22       1      58 [.     327     384 ..     327     385 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2
                HHHHHHHHS CS
      HTH_30 33 Lrrieellg 41
                Lrrie+  g
  KIR60698.1 13 LRRIERAAG 21
                566666555 PP

  == domain 2  score: 77.0 bits;  conditional E-value: 2e-25
                 ...HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHH CS
      HTH_30   1 LleTLraylenggnisatAkaLhvHrnTlryRLrrieellgldlddpddrlaLylAlr 58 
                 LleTL+a++++gg ++ +A+aL+vH+nT+ryRLrri +++gl++  p+d++aL++Al 
  KIR60698.1 327 LLETLDAFFAAGGTLESAARALFVHPNTVRYRLRRIADVTGLSPLTPRDAFALQVALT 384
                 89******************************************************96 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   4.6      0.29   1.1e+03      23     108 ..      48     155 ..       4     163 .. 0.66
   2 !   46.5   1.4   1.1e-15   3.9e-12       2     112 ..     169     276 ..     168     280 .. 0.94
   3 ?   -2.0   0.1       1.1   4.1e+03      74      98 ..     311     342 ..     297     347 .. 0.54

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.29
     GGDEF_2  23 yvvvviel..........ee.daerllraleealralgpdalva.vrgdrlvlllpaedeedae...........allerlarrlgglsvriGiGspve 98 
                 +v++v+++          ++  + +  +++++++ a++p al+  +  ++ v+l+++  +   e           + l+++  r+++ ++ +++ ++++
  KIR60698.1  48 WVMLVAQAgarslvqwlrDGgGTADSTQEVSDEVFATAPLALARsISLQQTVALIKVTIDVVEEqvgtlaaegeeQQLREAVLRFSR-EIAFAAARVYA 145
                 555555555555554443213333345555555544444444441566688888885544222222334444556777777777777.89999999999 PP

     GGDEF_2  99 glaglrrSyr 108
                 ++a+ r S+ 
  KIR60698.1 146 RAAESRGSWD 155
                 9999888876 PP

  == domain 2  score: 46.5 bits;  conditional E-value: 1.1e-15
     GGDEF_2   2 grsdeellerarrlgldldgpyvvvvielee.daerllraleealralgpdalvavrgdrlvlllpaedeedaeallerlarrlgglsvriGiGspveg 99 
                 g+s++ l++r+++lg++ + p++v+v + ++ +  ++l ++++++r+ g +++ +v+gdrlv++l ++++  + a+  +l+ ++g+    + +G+ v++
  KIR60698.1 169 GDSPDVLASRGAALGWSDAPPVAVAVGRSPGgEVAAVLHTVHRLARRVGVEVIGGVHGDRLVIVLGGAAD--PMAATGKLLPAFGE--GPVVVGPAVPS 263
                 788899**********************88879999******************************9996..7899*********9..*********** PP

     GGDEF_2 100 laglrrSyreArr 112
                 l+++ +S r A++
  KIR60698.1 264 LDEATDSARAALA 276
                 *********9986 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.1
     GGDEF_2  74 e...allerlarrlgg....lsvriGiGspve 98 
                 +   +++++lar+ g+    l++ +++G++ e
  KIR60698.1 311 RlrhDVYATLARAGGElletLDAFFAAGGTLE 342
                 13344555555554445555666666666655 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3   4.5e+03      18      29 ..     207     218 ..     202     219 .. 0.61
   2 ?   12.1   0.0   3.7e-05      0.13      16      49 ..     337     371 ..     327     372 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
      HTH_23  18 lsvreIAreLgv 29 
                 ++v++ Ar+ gv
  KIR60698.1 207 HTVHRLARRVGV 218
                 566666666665 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.7e-05
      HTH_23  16 eGlsvreIAreLgvsrrTvyrwlkryre.eGlegl 49 
                  G + + +Ar+L v+++Tv+  l+r +   Gl++l
  KIR60698.1 337 AGGTLESAARALFVHPNTVRYRLRRIADvTGLSPL 371
                 4889999*************777776666888887 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.8e-05      0.13      16      41 ..     336     361 ..     332     361 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.8e-05
                 HTTT-HHHHHHHHTS-HHHHHHHHHH CS
       HTH_8  16 rtgGnkskAArlLGisRrtLyrKLkk 41 
                 ++gG +  AAr L ++++t++++L++
  KIR60698.1 336 AAGGTLESAARALFVHPNTVRYRLRR 361
                 58999*******************97 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.1   4.1e+03      31      48 ..      47      66 ..      46      70 .. 0.61
   2 ?   11.8   0.0   5.7e-05      0.21      10      47 ..     336     374 ..     328     376 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.1
      HTH_28 31 rWikryeegGiagLvp..rr 48
                +W+    + G  +Lv+  r 
  KIR60698.1 47 SWVMLVAQAGARSLVQwlRD 66
                67766677777777665444 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 5.7e-05
      HTH_28  10 aaGhsvreaArelgisrrtv.yrWikryeegGiagLvpr 47 
                 aaG++   aAr+l +++ tv yr+++  +  G+  L pr
  KIR60698.1 336 AAGGTLESAARALFVHPNTVrYRLRRIADVTGLSPLTPR 374
                 6899****************7777777777999888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3035.80
//
Query:       KIR60699.1  [L=408]
Description: hypothetical protein TK50_22765 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-14   52.3   2.4    6.2e-14   52.3   2.4    3.1  3  HisKA_3   Histidine kinase
  ------ inclusion threshold ------
       0.19   11.9   0.5        4.3    7.5   0.0    2.3  2  DUF872    Eukaryotic protein of unknown function (DUF872)
        5.4    7.3   6.3        3.7    7.8   1.4    2.3  2  YesK      YesK-like protein


Domain annotation for each model (and alignments):
>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   1.7      0.19   1.2e+03      29      58 ..     163     192 ..     151     196 .. 0.60
   2 !   52.3   2.4     1e-17   6.2e-14       1      65 [.     197     262 ..     197     265 .. 0.96
   3 ?   -0.5   0.1      0.31   1.9e+03      41      67 ..     273     299 ..     269     300 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.19
                 HHTTT-HHHHHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3  29 rllekdpekaaeqlreieelarealqevRr 58 
                  +++++ ++aae+ +++e++ar a  + R+
  KIR60699.1 163 DQAAAERARAAEERARAEQTARLAELDRRE 192
                 444455556666667777776666555555 PP

  == domain 2  score: 52.3 bits;  conditional E-value: 1e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLr.p 65 
                 ER r+ARELHD+v+ +L a+++++ +a      d e++a  lr i+e++ + l+e+R+l++ Lr p
  KIR60699.1 197 ERSRMARELHDVVANHLGAVAIHATAALSVPGLDREQVASSLRVIRENSVQGLAEMRQLIGLLReP 262
                 9***************************99999*******************************44 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHHHHHHHHHHHHHTTHH CS
     HisKA_3  41 qlreieelarealqevRrllhnLrpaa 67 
                 +++ +ee+ r  l+e+ rl++++r a 
  KIR60699.1 273 AVDPAEEATRVRLAELDRLVGRMRAAG 299
                 567788889999999999999999765 PP

>> DUF872  Eukaryotic protein of unknown function (DUF872)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   0.00072       4.3      44      80 ..      14      50 ..       7      56 .. 0.88
   2 ?    2.0   0.2     0.036   2.2e+02      42      67 ..     134     159 ..     118     169 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00072
      DUF872 44 kvvlaallLlllGlvLlllgvvilvepseGvssavfl 80
                + v++a + l+ Gl+Ll lg+ ++++p +Gv +a+fl
  KIR60699.1 14 RDVALAGVALAGGLALLGLGTHLAITPRPGVPTAAFL 50
                668888888999***********************97 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.036
      DUF872  42 nrkvvlaallLlllGlvLlllgvvil 67 
                  ++ v++ + ++l+G+v +l+g+ + 
  KIR60699.1 134 HWRGVALGVPVVLVGVVPVLTGISVR 159
                 7999*****************99886 PP

>> YesK  YesK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.3     0.051   3.1e+02      56      76 ..      70      92 ..      48      98 .. 0.80
   2 ?    7.8   1.4   0.00062       3.7      30      75 ..     111     156 ..     103     162 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.051
        YesK 56 Gmglg..ilgvsvligtllglii 76
                G++lg  +lgv v +gt lg+++
  KIR60699.1 70 GLALGtaALGVDVALGTTLGTAL 92
                666663268999********975 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00062
        YesK  30 iilllilillslivvlysllvvGGweGmglgilgvsvligtllgli 75 
                  +ll  ++ lsl + +  +lv G w G++lg+  v v +  +l+ i
  KIR60699.1 111 RWLLRGSVALSLLAAVGGVLVFGHWRGVALGVPVVLVGVVPVLTGI 156
                 58888899999999999999************98888776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 2584.61
//
Query:       KIR60700.1  [L=179]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   11.7   0.3       0.19   11.1   0.0    1.4  2  DUF2417   Region of unknown function (DUF2417)
        3.6    7.9  12.2        7.8    6.8  12.2    1.7  1  TctB      Tripartite tricarboxylate transporter TctB family


Domain annotation for each model (and alignments):
>> DUF2417  Region of unknown function (DUF2417)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.1e-05      0.19     111     204 ..      35     139 ..      11     142 .. 0.83
   2 ?   -4.1   1.0      0.94   8.4e+03     138     148 ..     156     166 ..     147     173 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.1e-05
     DUF2417 111 ivlavLllvnllllllvkytReregfvgiasvlWaaltfllgilldr.yvekgkkeeeerltgreet...........rhtlkewlsilvrniikllll 197
                   l+ + lv+l+ll +   +  r g +  a++  aa+  ++++++ +  + +  + +  r +g +             rh ++ew + l+   + ++ll
  KIR60700.1  35 ALLVCVPLVDLVLLAA-AALDLRRGATADATHGLAAAYLGFSVAFGHsLIRWADQRFAHRFAGGPPPvrpprygwaraRHEWREWAKGLLGWAVACALL 132
                 5677889999988765.56788888888888888888887777765516789999999**9999988999***************************** PP

     DUF2417 198 vvlillt 204
                 v++i ++
  KIR60700.1 133 VAAIAFV 139
                 *999885 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 0.94
     DUF2417 138 giasvlWaalt 148
                 ++a+v+W ++ 
  KIR60700.1 156 TVALVIWLVAF 166
                 44555555544 PP

>> TctB  Tripartite tricarboxylate transporter TctB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  12.2   0.00087       7.8      28     125 ..      26     164 ..       1     169 [. 0.61

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00087
        TctB  28 pgffPlllgvllallgllllv..aadgekeekearedwrkllklvlallaalllyal.llepl.................................... 87 
                 p   P+l ++ll+++ l+ lv  aa++ + ++ a++  ++  +l +a+l   ++++  l++++                                    
  KIR60700.1  26 PLRRPRLGAALLVCVPLVDLVllAAAALDLRRGATA--DATHGLAAAYLGFSVAFGHsLIRWAdqrfahrfaggpppvrpprygwararhewrewakgl 122
                 223455544444444455555542333333333332..3333356666778888888899996666667777777777777777777777777777777 PP

        TctB  88 .Gfilatalflllll..g.reerkwlkalilavvlallvyll 125
                  G+ +a+al++++++  g  e+ + l++++ ++ +al+++l+
  KIR60700.1 123 lGWAVACALLVAAIAfvGdAERTRALWDFARTLTVALVIWLV 164
                 7*******9998888653756677899999999999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1322.98
//
Query:       KIR60701.1  [L=116]
Description: hypothetical protein TK50_22775 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      112  (0.00624686); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 904.38
//
Query:       KIR60702.1  [L=251]
Description: hypothetical protein TK50_22780 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1606.28
//
Query:       KIR60703.1  [L=456]
Description: glutamyl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-66  222.0   0.0    1.4e-65  221.2   0.0    1.4  1  tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic d


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.2   0.0     8e-70   1.4e-65      14     313 ..       2     287 ..       1     288 [. 0.96

  Alignments for each domain:
  == domain 1  score: 221.2 bits;  conditional E-value: 8e-70
                   -BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---S..SEEEEGGGGHHHHHHHHHHHHHTTSEEEE-STHHHHHHHH CS
  tRNA-synt_1c  14 LHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwd..ekptyqsdrfdelkkyaeeLikkGkAYvcectkeeleeer 108
                    H+G+a++al n+ fA++++G f+lR+eDTd++r+ +e +e il +l+w+gi     e+p+ qs +  e ++ a++L + G AY c+ct e +++  
    KIR60703.1   2 FHVGGARSALQNWIFARQQGGVFVLRVEDTDAARNRPEWTEGILSALDWIGIARGsyEGPYFQSSYAAEHRAAAQRLHEGGRAYYCDCTREAVQART 98 
                   6***************************************************9888899*********************************98877 PP

                   CCSSHSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSSGGGSSTEEEEEEESGGGSBTTTBTSTSEEE-HHHHHHHHHHHTT-SEEEE CS
  tRNA-synt_1c 109 eeqeklgskerdrydeenlklfeeemkkgkaegekavvRlkideessvefrDlvrgriklepqeihdlvivksdiyPtYdfavvidDaleeithvlr 205
                   ++  +      + yd+ +++           +ge   +R++ +  +++++ Dl+rg+  +e+  i+d+vi + d++P + +a+v+dD+ ++ithv+r
    KIR60703.1  99 GS--Q-----YSGYDGFCRDRG-------LPAGEGRALRFRTPDTGETVVVDLIRGEPTFENRLIEDFVIARGDGSPVFLLANVVDDMTMGITHVIR 181
                   66..3.....346999999887.......7899999************************************************************* PP

                   EGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHHHHHHHHHHCCCSSS.EEEEHH CS
  tRNA-synt_1c 206 teefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpekerelftreeliksfdlnresk 302
                   +ee+l ntpk+ +l +alg+++p+ +h+++++n++++klSKR  ++    ++++++++l  a+ n+l++lGw p+++re++    ++ +f l+ +  
    KIR60703.1 182 AEEHLPNTPKQQLLWDALGVKPPVWAHVPVVVNEKRQKLSKRRDKVA--LEAYRDEGYLADAMRNYLMLLGWAPSGDREIVPWSVIEDEFRLEEVNP 276
                   ********************************************999..************************************************ PP

                   HHHHHHHHHHH CS
  tRNA-synt_1c 303 sleafdrkkLe 313
                   s++ fd+kkL+
    KIR60703.1 277 SPAFFDEKKLR 287
                   *********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:01.54
# Mc/sec: 894.23
//
Query:       KIR60704.1  [L=425]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-30  103.7  47.5    3.7e-20   72.1  15.0    2.6  2  MFS_1         Major Facilitator Superfamily
    5.4e-12   45.0  17.7    5.4e-12   45.0  17.7    2.0  2  MFS_2         MFS/sugar transport protein
    5.4e-07   28.8   3.3    5.4e-07   28.8   3.3    2.4  2  Sugar_tr      Sugar (and other) transporter
     0.0021   17.0   1.4      0.038   12.9   1.3    2.3  2  MFS_1_like    MFS_1 like family
     0.0026   16.3   2.7     0.0026   16.3   2.7    1.9  2  TRI12         Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
      0.033   13.0   1.0       0.38    9.5   0.6    2.2  2  LacY_symp     LacY proton/sugar symporter
       0.19   10.3   5.3      0.069   11.8   1.9    2.0  2  ATG22         Vacuole effluxer Atg22 like


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6  26.0   1.9e-12   4.7e-09      33     241 ..      64     275 ..      26     286 .. 0.71
   2 !   72.1  15.0   1.5e-23   3.7e-20      37     168 ..     284     418 ..     274     423 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 1.9e-12
       MFS_1  33 eigllltlyalgaavaslplGrlsdr.f........Grrr.vlllglllfalglllllfa..sslwlllvlrvlqGlgagalfpagaaliadwfpkeer 119
                  +  +++l al+a++a++++G+lsdr +        Grr  +   g++l al+ l+ll a   ++  ++v++v + ++  a++++  a i d +p  +r
  KIR60704.1  64 MFAVVTGLGALAAVLANPLAGALSDRtClrvggrelGRRHvWTAGGAVLGALA-LVLL-ArqDTIAGVAVGWVAAQVCFNAMLASLTAGIPDRVPVLQR 160
                 466688889****************533555555559***5555555555555.6666.54455668******************************** PP

       MFS_1 120 graigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvl.williall 217
                 g + g++++  slG +lg++l  +++      a+ y+  ++++l++ l ++ll++++p ++  +p  +    ++a l++ w + +++p + w++l+ +l
  KIR60704.1 161 GGVSGWVGIPQSLGLVLGAVLVTAVV---TGNAAGYATIALAVLLLSLPFALLTADDPLPRAHRPPLR----VGALLASMWISPRRHPDFaWAWLTRFL 252
                 ******************99999999...344454444444444444555666666666666666666....688888889999999988896666666 PP

       MFS_1 218 lfffgfsg.lltllplylqevlgls 241
                 +   g+++ +l+ll + l +   ++
  KIR60704.1 253 VQL-GNALgTLYLLYF-LADGVRYP 275
                 665.555525555554.57776666 PP

  == domain 2  score: 72.1 bits;  conditional E-value: 1.5e-23
       MFS_1  37 lltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpk.eergraigllsagfsl 132
                 l+ ly+lg+++++++ Grlsdr Grr+ +++++ l++a+++lll++ +++w + +v+ vl G+g+g+++++ aali+++ p  ++r++ +g++++++s+
  KIR60704.1 284 LILLYTLGMILTAVVSGRLSDRSGRRKvFVITSGLVMAVAALLLAV-APVWpMAMVAAVLLGAGYGVYLSVDAALITEVLPAaTDRAKDLGVINIANSA 381
                 4556***********************8889999999999777775.99999*********************************************** PP

       MFS_1 133 Gailgpllgglla.sslgWravfyilaivsllafvlf 168
                   +lgp+l++ ++ +++g++ ++ + a+v+ll+  l+
  KIR60704.1 382 PQVLGPALSAPIVvHLGGYPTLYAATAAVTLLGSALV 418
                 *********977759999**************97753 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0  17.7   2.1e-15   5.4e-12      33     343 ..      63     362 ..      27     370 .. 0.87
   2 ?    0.4   0.1     0.072   1.8e+02     262     307 ..     373     419 ..     364     423 .. 0.76

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 2.1e-15
       MFS_2  33 alvglvllvarlvDaitDpivGtlidktstr.....wGrrrPwlllsaiilavsiillftppelsqsakfiwllvtyillrilytlfeipyvslvpvlt 126
                 a++++v  +  l  ++ +p++G+l+d+t +r     +Grr+ w   +a++ a++++ll  + ++  +  + w++++ +  ++l + ++  +   vpvl 
  KIR60704.1  63 AMFAVVTGLGALAAVLANPLAGALSDRTCLRvggreLGRRHVWTAGGAVLGALALVLLARQDTI-AGVAVGWVAAQVCFNAMLAS-LTAGIPDRVPVL- 158
                 67888888899999***************993333346888*****************999885.55999999999998555554.456667889999. PP

       MFS_2 127 kdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkervemrkkekteqkeklslleqlkevfrnra 225
                     +R  ++++  + + lg vl+a+l++++v   ++      gy ++al   lL+l  +++++     r     +++++ +    l  ++ +  r++ 
  KIR60704.1 159 ----QRGGVSGWVGIPQSLGLVLGAVLVTAVVTGNAA------GYATIALAVLLLSLPFALLTADDPLPR-----AHRPPLRVGALLASMWISPRRHPD 242
                 ....***************************999888......***************999995544444.....4557777777788999999***** PP

       MFS_2 226 flillllfllaalalgvlnglllYyltyvlg..ngsaasvfllvv.tisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvll 321
                 f +  l+ +l++l+ +++   llY+l + ++  + +   ++l+++ t++++l++++  +l  r g+++++++ + l+++  +l+l++ +  + +++v++
  KIR60704.1 243 FAWAWLTRFLVQLGNALGTLYLLYFLADGVRypDPEGGLLVLILLyTLGMILTAVVSGRLSDRSGRRKVFVITSGLVMAVAALLLAV-APVWPMAMVAA 340
                 ****99**********************9998666666666666679****************************************.*********** PP

       MFS_2 322 viagfgvgvaallpwsmladvv 343
                 v+ g g+gv  ++ ++++++v 
  KIR60704.1 341 VLLGAGYGVYLSVDAALITEVL 362
                 ******************9986 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.072
       MFS_2 262 svfllvvtisallgiplwqplakrlgkk.ntyllgalltivllvlvl 307
                  v+ ++  ++++lg +l +p++ +lg + ++y++ a++t+++++lv+
  KIR60704.1 373 GVINIANSAPQVLGPALSAPIVVHLGGYpTLYAATAAVTLLGSALVV 419
                 55666666788888888888999998887888888888888888876 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   4.5       4.8   1.2e+04     124     173 ..     142     196 ..     107     211 .. 0.59
   2 !   28.8   3.3   2.1e-10   5.4e-07      51     135 ..     284     366 ..     227     422 .. 0.86

  Alignments for each domain:
  == domain 1  score: -5.3 bits;  conditional E-value: 4.8
                 HHHHHTTS......-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHH CS
    Sugar_tr 124 PmyisEiA......pkklRgalvslyqlaitfGilvaaifglglnktsnadgwril 173
                  m++s  A      p   Rg + ++     ++G +++a++ +++ + ++  g+   
  KIR60704.1 142 AMLASLTAgipdrvPVLQRGGVSGWVGIPQSLGLVLGAVLVTAVVTGNA-AGYATI 196
                 4444444455555566667777777777777777777777777777777.444433 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 2.1e-10
                 HHHTHHHHHHHHHHHHHHHHHHTTHHHHHHH.HHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCC CS
    Sugar_tr  51 ivsiflvGaiiGslfagllgdrfGRkkslli.aavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkkl 135
                 +  ++ +G i++++++g l+dr GR+k+++i +++++ ++a+l a+a+    + + +v+ vl+G g G+   +   +i E+ p++ 
  KIR60704.1 284 LILLYTLGMILTAVVSGRLSDRSGRRKVFVItSGLVMAVAALLLAVAP---VWPMAMVAAVLLGAGYGVYLSVDAALITEVLPAAT 366
                 556789***********************997899999**********...999*****************999999999987654 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.027        69      36      62 ..      65      91 ..      59     122 .. 0.89
   2 !   12.9   1.3   1.5e-05     0.038     221     345 ..     237     365 ..     161     410 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.027
  MFS_1_like 36 igiitlilpltsilsppiwgvlaDrfg 62
                 +++t +  l ++l+ p+ g+l+Dr+ 
  KIR60704.1 65 FAVVTGLGALAAVLANPLAGALSDRTC 91
                57899999*****************85 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.5e-05
  MFS_1_like 221 ilknpeviifllvalilgmswgiienFlflYL.kelgasntllGslv..algvvaeiplfffaeklleklGhvkllii.allayilrfllyaiienawl 315
                   ++p  ++  l+ ++++  +++   +l  +L + + ++    G lv   l +++ i + +++ +l ++ G +k+ +i + l++++  ll+a+  ++ +
  KIR60704.1 237 PRRHPDFAWAWLTRFLVQLGNALGTLYLLYFLaDGVRYPDPEGGLLVliLLYTLGMILTAVVSGRLSDRSGRRKVFVItSGLVMAVAALLLAVAPVWPM 335
                 456788888888888888888888888888888888888887776541167888899999999999999999887544156778888888888888889 PP

  MFS_1_like 316 vlpievLhgisfgllwaaaveyvskiapks 345
                 ++++ vL g+ +g++ ++ +  + ++ p  
  KIR60704.1 336 AMVAAVLLGAGYGVYLSVDAALITEVLPAA 365
                 999999999999988888777777777765 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   1.2       0.3   7.8e+02      67     158 ..      49     144 ..      26     169 .. 0.68
   2 !   16.3   2.7     1e-06    0.0026      85     175 ..     286     383 ..     278     404 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.3
       TRI12  67 lpnilqdvgqsensslfstlwttgqavsil...vmgrltdrfgrrp...fvilthilglvgaivgctatkfntllaamtllgvaagpagasplfvgel 158
                 lp+ ++ +   +++++f+ +  +g   ++l   + g l+dr   r     +   h+    ga++g+ a     l    t+ gva g   a   f   l
  KIR60704.1  49 LPQQIERIAPGDKEAMFAVVTGLGALAAVLanpLAGALSDRTCLRVggrELGRRHVWTAGGAVLGALALV--LLARQDTIAGVAVGWVAAQVCFNAML 144
                 6777777777777788887777777666663335677777755443111234578888888888877643..34445678888888777766665544 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1e-06
       TRI12  85 tlwttgqavsilvmgrltdrfgrrp.fvilthilglvgaivgctatkfntllaamtllgvaagpaga.splfvgelm...snktkflglliv..sipv 175
                  l+t+g  ++ +v grl+dr grr  fvi + ++  v a++ + a  +   + a  llg   g   +    ++ e++   ++++k lg++ +  s+p 
  KIR60704.1 286 LLYTLGMILTAVVSGRLSDRSGRRKvFVITSGLVMAVAALLLAVAPVWPMAMVAAVLLGAGYGVYLSvDAALITEVLpaaTDRAKDLGVINIanSAPQ 383
                 689*******************98548999999999*************999999****999976541456778876222345567776654224444 PP

>> LacY_symp  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.035        90      16      73 ..      31      93 ..      23     145 .. 0.82
   2 ?    9.5   0.6   0.00015      0.38      52     113 ..     288     347 ..     240     374 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.035
   LacY_symp 16 fffyffimsayfplfpvwl.kevlglsktetGivfsvi....slfsilfqplfGlisdklGlk 73
                f     ++ a+f+ + v l +++  ++ ++   +f+v+     l ++l  pl G +sd+  l+
  KIR60704.1 31 FAANLGVWMAFFTPIQVLLpQQIERIAPGDKEAMFAVVtglgALAAVLANPLAGALSDRTCLR 93
                555555677777666777735567899999999999973333589999**********99887 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00015
   LacY_symp  52 islfsilfqplfGlisdklGlkkellwvislllvlfapfliyvfepllqlnilvGalvGgvf 113
                  +l  il  ++ G +sd+ G +k  ++vi+  lv+    l+   +p+  + +++ +l+G+ +
  KIR60704.1 288 YTLGMILTAVVSGRLSDRSGRRK--VFVITSGLVMAVAALLLAVAPVWPMAMVAAVLLGAGY 347
                 34445666667777777777776..4556666666666667777777777777777777644 PP

>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.58   1.5e+03      17     252 ..      34      52 ..      23      77 .. 0.59
   2 ?   11.8   1.9   2.7e-05     0.069      79     152 ..     287     358 ..     280     373 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.58
       ATG22  17 evfavvavgsfvPllleqlarenGvllsdksapCsakgdeqcvvkflgieidtaSfvlytfslsvllqavvvislsglADygnyrknlLlafaligsls 115
                 +                                                                                                  
  KIR60704.1  34 NLG------------------------------------------------------------------------------------------------ 36 
                 333................................................................................................ PP

       ATG22 116 tilfllvtpkkYllgavlyivsntcfgaslvllnsfLPllvredpelqeaeeeeeeeeessetaeeeeskelklstriSslGlaigylgailvqiisil 214
                                                                                                                    
  KIR60704.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

       ATG22 215 ivialgstatfslrlalllvGlwWliftipaalllkkr 252
                                       +W++f +p+ +ll+++
  KIR60704.1  37 ----------------------VWMAFFTPIQVLLPQQ 52 
                 ......................4555555666666554 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.7e-05
       ATG22  79 lsvllqavvvislsglADygnyrknlLlafaligslstilfllvtpkkYllgavlyivsntcfgaslvllnsfL 152
                 l++l  ++++++ + l+D++  rk ++++++l+ +++++l+++     + +++v +++  + +g++l++  +++
  KIR60704.1 287 LYTLGMILTAVVSGRLSDRSGRRKVFVITSGLVMAVAALLLAV--APVWPMAMVAAVLLGAGYGVYLSVDAALI 358
                 556666777888888********************99998887..889******************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       905  (0.0504769); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.48
# Mc/sec: 2667.86
//
Query:       KIR60705.1  [L=148]
Description: cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-12   48.1   2.7    1.6e-12   47.9   2.7    1.0  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
    1.6e-06   28.4   0.0    1.9e-06   28.1   0.0    1.1  1  AHSA1            Activator of Hsp90 ATPase homolog 1-like pro
    1.5e-05   25.2   0.2    2.9e-05   24.3   0.2    1.5  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
  ------ inclusion threshold ------
      0.027   14.2   0.0      0.049   13.4   0.0    1.6  1  COXG             Carbon monoxide dehydrogenase subunit G (Cox


Domain annotation for each model (and alignments):
>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   2.7   3.5e-16   1.6e-12       1     141 [.       1     144 [.       1     146 [. 0.70

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 3.5e-16
                      EEEEEEEEEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSESTSSSTTTEEEEECCCS.SEEEEEEEEEETTTTEEEEEEE.....SSS-TSEE CS
  Polyketide_cyc2   1 mvkvtvsvviaappekVwalvsdfenwprWhpevarveleggggpargvegtvrvggr.gtvreelvevdpegrllsyriv....kpvpvanyv 89 
                      m+ v++s+++ ap+e+Vw++v+  e++p+W  +v+ +e+ +g+g   g++  v++g r +  + e++++++ ++l+++r +    + +  a+ +
       KIR60705.1   1 MILVERSAHVMAPVEAVWEVVQRAEQLPAWLAGVRAAEVLSGEGF--GRRQLVQAG-RgSAHEAEVIAFQE-PTLIGWRERakgaGARAEARTE 90 
                      5679**********************************9995555..554555555.53545669999997.9*******65554444444456 PP

                      EEEEEEECC..ETEEEEEEEEEE.E.E--TT--HHHHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  90 atwtvtpdg..ggtrvtwtgefd.a.gplggpfekpaaakavkgdleagLerLkar 141
                       ++++t+d+  ggt v+  + ++ + gp+++ +    + + v++dle++L+rL  +
       KIR60705.1  91 IYVQLTADEeeGGTIVRLIV-VRwPaGPVKAALLRLGL-RRVGADLEDSLARLTDL 144
                      66888888863456666555.44233555544443333.36677799999999765 PP

>> AHSA1  Activator of Hsp90 ATPase homolog 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   4.2e-10   1.9e-06       2     122 ..      12     136 ..      11     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 4.2e-10
                 S-HHHHHHHHH-HHHHHHHEEEEEEEE--STTEEEEE.EETTTSEEEEEEEEEEEEETTTEEEEEEEEETSET..EEEEEEEEEEEE..ETTEEEEEEE CS
       AHSA1   2 apperVfraltdpellkrWftlteaemdlrpGgkfrl.rdspdgkefgnegeylevvpperlvytwrledepe..eeestvtielee..egggTrltlt 95 
                 ap+e V+++  ++e+l +W    +   ++  G  f   +  + g+   +e+e+++ ++p+ + ++ r ++ ++  e+++++ ++l++  e+ggT ++l 
  KIR60705.1  12 APVEAVWEVVQRAEQLPAW-LAGVRAAEVLSGEGFGRrQLVQAGRGSAHEAEVIAFQEPTLIGWRERAKGAGAraEARTEIYVQLTAdeEEGGTIVRLI 109
                 8******************.55555555555655655555688999999999*************9999555566778888888887758888****** PP

                 EEEEEHCHHHHHHHHHHHHHHHHHHHH CS
       AHSA1  96 htglprkqkeeegveeGweqsldqLka 122
                   ++p++  +++  + G +++ + L++
  KIR60705.1 110 VVRWPAGPVKAALLRLGLRRVGADLED 136
                 *99999999998788888777766665 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.2   6.4e-09   2.9e-05       2     110 ..      11     119 ..      10     139 .. 0.59

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 6.4e-09
                     SS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE.....E.........................EEECSTTSSCEEEEEEEEEEETTTEEECT CS
  Polyketide_cyc   2 papadqvyalvadvesypeflphcssvevleeaes..glsa.........................dlevgfggltesftarvtldppeeitfkl 69 
                      ap++ v+++v++ e++p +l +++ +evl+ ++   +                            + + + +g +++  ++++ +  ++  ++ 
      KIR60705.1  11 MAPVEAVWEVVQRAEQLPAWLAGVRAAEVLSGEGFgrR--QlvqagrgsaheaeviafqeptligwRERAKGAGARAEARTEIYVQLTAD--EE- 100
                     59*******************************96330..12333555555555555555555544444444444444444444444444..11. PP

                     TCCCCCEEEEEEEECTECCEEECEEEEEEEEEEEE-SSCHH CS
  Polyketide_cyc  70 vegdfkslegkWtieslppnsggtrtkvalevdfkfaspll 110
                                           + +t v+l v   +a+p+ 
      KIR60705.1 101 ----------------------EGGTIVRLIVVRWPAGPVK 119
                     ......................4444444444444455555 PP

>> COXG  Carbon monoxide dehydrogenase subunit G (CoxG)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.1e-05     0.049       3      49 ..       8      55 ..       6     109 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.1e-05
                EEESS-HHHHHHHHT-HHHHGGGSTTEEEEEEET.TEEEEEEEEESSS CS
        COXG  3 frvaapkeavwefLndpeklarciPGvksvekeg.deykvkvklkvGp 49
                 +v ap eavwe+++ +e+l + + Gv   e+ + + +     ++ G 
  KIR60705.1  8 AHVMAPVEAVWEVVQRAEQLPAWLAGVRAAEVLSgEGFGRRQLVQAGR 55
                699*************************99998866666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1162.12
//
Query:       KIR60706.1  [L=914]
Description: pyruvate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.9e-113  376.4   0.1   6.9e-113  375.8   0.1    1.2  1  PDH_E1_M         Pyruvate dehydrogenase E1 component middle d
    1.6e-13   50.3   0.0    3.6e-09   36.0   0.0    2.3  2  Transketolase_N  Transketolase, thiamine diphosphate binding 
  ------ inclusion threshold ------
      0.013   15.3   0.0       0.07   13.0   0.0    2.1  2  Transketolase_C  Transketolase, C-terminal domain


Domain annotation for each model (and alignments):
>> PDH_E1_M  Pyruvate dehydrogenase E1 component middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.8   0.1  1.2e-116  6.9e-113       3     229 .]     492     717 ..     490     717 .. 0.98

  Alignments for each domain:
  == domain 1  score: 375.8 bits;  conditional E-value: 1.2e-116
    PDH_E1_M   3 lpdeddktyeiqrkgsktrevattmafvrvlkdlvkdkkigkrvvpiipdeartfgmealfrtlkiytsegqkyesvdknlilsykedkegqileegit 101
                 +p  +   ++  ++gs+ ++vattmafvr+lkd++kdk+ gkr vpiipdeartfgm++lf+t kiy+++gq+y svd++l+lsyke++ gqil+egi+
  KIR60706.1 492 IPGSER--FSDVKRGSGKQKVATTMAFVRLLKDIMKDKEFGKRWVPIIPDEARTFGMDSLFPTQKIYSPHGQRYTSVDRELFLSYKESTTGQILHEGIN 588
                 555555..888999************************************************************************************* PP

    PDH_E1_M 102 eagavaafiaaassydthdltllpvyvyysmfgfqrvgdliwaaadqlargflvgatagkttlageglqhqdghshllaasipavvsydpayayevavl 200
                 eag+va+f+aa+++y th  +++p+y++ysmfgfqr+gd  waaadq+argf++gatag+ttl+geglqh dghs llaa++pavv+yd a+a+e+a++
  KIR60706.1 589 EAGSVASFTAAGTAYATHGEPMIPLYIFYSMFGFQRTGDGFWAAADQMARGFVLGATAGRTTLNGEGLQHEDGHSLLLAATNPAVVAYDAAFAFELAHI 687
                 *************************************************************************************************** PP

    PDH_E1_M 201 vaeglkrmyae.kenviyyltvlnenlvqp 229
                 +++gl+rmy+e  en++yyltv+ne++ qp
  KIR60706.1 688 MENGLHRMYGEqPENIFYYLTVYNEPIHQP 717
                 ***********88**************998 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0     6e-13   3.6e-09      58     218 ..     148     311 ..      90     322 .. 0.82
   2 !   11.8   0.0   1.4e-05     0.082     214     278 ..     375     441 ..     367     448 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 6e-13
                      EEESSGGGHHHHHHHHHHTTSS--HHHHTTTTSTT-SS-S.S--TTTSTT-....-S---STTHHHHHHHHHHHHHHHHHHHH-BTTB-S---- CS
  Transketolase_N  58 fvLsnGhaslllYsllhLtGydlsledlksfrqlgsktpG.hPelghtagv....evttGPLGqGianavglalaektlaatynkpgfdivdhy 146
                       +  +Ghas  +Y+  +L G  ls ++l  frq  s+  G  P + h + +    e  t  +G G  na+  a+ ++ l  +     +d ++++
       KIR60706.1 148 HIFYQGHASPGMYARAFLEG-RLSENQLDGFRQELSHPGGgLPSYPHPRLMpdfwEFPTVSMGLGPLNAIYQARFNRYLHHRGI---KDTSQQH 237
                      57789***************.6999*******8777654334555544332222399*******************99987665...67889** PP

                      EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTEEGG..GT--S-HHHHHHHTT-EEEEETTTT- CS
  Transketolase_N 147 tyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidGete..isftedvakrfeaygWhvievedged 218
                      ++++lgDg + e  s  a+ +a+  +L++L  + + n   +dG +     + ++ ++ f+  gW+vi+v  g +
       KIR60706.1 238 VWAFLGDGEMDEVESLGAIGVAAREELDNLTFVINCNLQRLDGPVRgnGKIMQELEAFFRGAGWNVIKVVWGRE 311
                      *******************************************9962257899***************976665 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 1.4e-05
                      TTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTT..TSTTTTTSGGGTSS.---HHHHHHHHHHTTS- CS
  Transketolase_N 214 edgedveaikaaieeakaekdkPsliklrtviGy..gspakagtedvhGa.pLgedevaalkkklGfd 278
                      ++g+d +++ aa ++a +++ +P++i  +t+ G+  gs   +g +++h    L  d+++  + +l +d
       KIR60706.1 375 RGGHDYRKLYAAYKAAMEHTGQPTVILAKTIKGWtlGS-HFEGRNATHQMkKLTLDDLKLFRDRLYLD 441
                      589******************************73366.88999999975268889998888887655 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.51     3e+03      64      86 ..     103     125 ..      93     131 .. 0.79
   2 ?   13.0   0.0   1.2e-05      0.07       5      55 ..     741     792 ..     739     802 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.51
                      EEEEEEEESTTSHHHHHHHHHHH CS
  Transketolase_C  64 lvvveeavkrgGigsevaaalae 86 
                      ++v   ++++ G+g +++++ + 
       KIR60706.1 103 MLVHRAQRPEIGVGGHISTFASS 125
                      5666778899********99887 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.2e-05
                      EEETTSSEEEEEETTHHHHHHHHHHHHHTT.TTCEEEEE-SEEESHHHHHHH CS
  Transketolase_C   5 ilregkdvtlvayGsmveealeAaeeLeke.gisaeVvdlrtvkplDketil 55 
                      ++ +g++  ++a G+ ++ al+A + L+++ g+ a+V+++ +   l ++ ++
       KIR60706.1 741 VDGDGPRANILASGTGMQWALKAQQLLAQDwGVAADVWSVTSWTELRRDAVE 792
                      67789999********************************998888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (914 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 6087.93
//
Query:       KIR60707.1  [L=550]
Description: alkaline phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.1e-111  370.4   2.4     1e-110  370.1   2.4    1.1  1  PhoD             PhoD-like phosphatase
    1.3e-32  112.2   0.0    2.4e-32  111.3   0.0    1.5  1  PhoD_N           PhoD-like phosphatase, N-terminal domain
    0.00034   21.1   0.0    0.00077   20.0   0.0    1.7  1  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
     0.0027   17.5   6.3     0.0027   17.5   6.3    2.6  2  TAT_signal       TAT (twin-arginine translocation) pathway si


Domain annotation for each model (and alignments):
>> PhoD  PhoD-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.1   2.4  2.3e-114    1e-110       1     350 []     154     488 ..     154     488 .. 0.93

  Alignments for each domain:
  == domain 1  score: 370.1 bits;  conditional E-value: 2.3e-114
        PhoD   1 lavvSCqnyeagyfnayrelaeeedlDlvlhlGDyiYeygpgeyaseaaelgreveppkeivtladYReryaqyktdadlqaahaaapfivvwDDHEva 99 
                 +++vSC++ye+gyf+ayr+lae+ +++l+lhlGDy Yey++g+y+   ++  r++e p e+ tla+YR+r+aqyktdadlqaaha ap++vv+DDHEv+
  KIR60707.1 154 MGFVSCSQYEHGYFTAYRRLAET-EPELILHLGDYQYEYEKGTYTV-PGGNPRDHEGP-ETRTLANYRQRHAQYKTDADLQAAHAVAPWVVVFDDHEVE 249
                 679********************.***************9999999.77888999999.9*************************************** PP

        PhoD 100 NnswsggaenhqeetegdfekrkaaAlqAyfEwmPirea.kp.geeeriyrsfeyGdladlflLDtRqyrrdqavsyegdeleaaeaevkdpartlLGe 196
                 Nn w+++  +     + df +r+aaA+qAy+E+mP+r++  p g ++++yr++++G+la++++LDtRqyr+dqa+   gd   +++a+++dpar++ G+
  KIR60707.1 250 NN-WADEVPEAP---DPDFLARRAAAFQAYYENMPLRRTsLPrGIDMQLYRRVRWGRLATFHMLDTRQYRDDQAC---GD-GYKECAAAADPARSITGA 340
                 **.***887777...99********************996656889*****************************...44.456889999********* PP

        PhoD 197 eQeqwLkaeLkasrarWkvlaqqvlmskvdldaelaegalpvnlDawdGypaeRerlletikeakirnvVvLtGDvHaawandl..dykdpdgeavgvE 293
                 eQe+wL +++++s+arW +l+qqv++++ d   +++ + ++ ++DawdGy a+R+r+++ + +a++rn VvLtGDvHa+wa+dl  dy+dp++++vg E
  KIR60707.1 341 EQEAWLLDGFRRSDARWDILGQQVFFAQRD---NNSGPLTVTSMDAWDGYVASRDRITRGWLAAGVRNPVVLTGDVHAHWASDLklDYADPTSRTVGSE 436
                 ******************************...444455689******************************************777************ PP

        PhoD 294 fvtgsvssgglgeylaeaadateeallaanpelkytelderGyveldlteeavtadl 350
                 +v++sv+s+g g+++       + +  a np+l++ +++ rGyv++++t+ ++ ad+
  KIR60707.1 437 LVCSSVTSTGDGADSP---TGSHPW-FAFNPHLRF-QNNLRGYVRTTITPAQLAADF 488
                 **************99...444444.599******.99*************999876 PP

>> PhoD_N  PhoD-like phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.3   0.0   5.4e-36   2.4e-32       1      90 []      43     141 ..      43     141 .. 0.99

  Alignments for each domain:
  == domain 1  score: 111.3 bits;  conditional E-value: 5.4e-36
      PhoD_N   1 hGVasGDptadsvilWTRvapesee.........rpvrvevevaedeafkkvvrkgtalatseldytvkvevtgLkpgqeyfYrfragsesspvGrtrT 90 
                 +GVasGDp++++++lWTR+ap++ +         rpv+v++eva+de++++vvr+g a+a++e +++v+ve+ gL pg+eyfYrfra++ +spvGrtrT
  KIR60707.1  43 LGVASGDPDHEGFVLWTRLAPQPLAedglggmpaRPVAVTWEVAADEGLRHVVRRGVAQARPEAAHSVHVELGGLLPGREYFYRFRAEGYASPVGRTRT 141
                 59**********************9*************************************************************************9 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.7e-07   0.00077      56      94 .]     104     141 ..      45     141 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.7e-07
  Pur_ac_phosph_N  56 yksgyshkatltgLepgttYyYrvgddeggwSevysfkT 94 
                       +  +s +++l gL pg +Y+Yr+++++   S+v++++T
       KIR60707.1 104 PEAAHSVHVELGGLLPGREYFYRFRAEG-YASPVGRTRT 141
                      4678899*********************.9*****9998 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   6.3     6e-07    0.0027       2      24 ..       3      25 ..       2      27 .. 0.92
   2 ?   -3.6   5.1       2.8   1.3e+04      13      19 ..      27      33 ..      26      33 .. 0.51

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6e-07
  TAT_signal  2 lSRRdFLKgsAAaaAAaalggca 24
                lSRR+ L  +AA++AA+a++g+ 
  KIR60707.1  3 LSRRTILLSGAAVGAAGAVAGLP 25
                8*******************975 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.8
  TAT_signal 13 AaaAAaa 19
                Aa+AAaa
  KIR60707.1 27 AAGAAAA 33
                4555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 4009.99
//
Query:       KIR60708.1  [L=160]
Description: MarR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-15   55.7   1.7    3.2e-15   55.7   1.7    2.4  3  MarR_2          MarR family
    3.7e-14   52.4   0.1    8.3e-14   51.3   0.1    1.6  1  MarR            MarR family
    4.5e-12   46.3   1.2    6.6e-12   45.7   0.2    1.8  2  HTH_27          Winged helix DNA-binding domain
    5.4e-06   26.4   0.9    1.2e-05   25.2   0.2    1.9  2  HTH_20          Helix-turn-helix domain
    7.2e-05   22.9   0.0    0.00013   22.1   0.0    1.4  1  HTH_34          Winged helix DNA-binding domain
    0.00019   21.3   0.0    0.00035   20.4   0.0    1.5  1  TrmB            Sugar-specific transcriptional regulator TrmB
     0.0014   18.7   0.0     0.0021   18.1   0.0    1.3  1  DUF2250         Uncharacterized protein conserved in archaea 
     0.0081   16.1   0.3      0.017   15.1   0.1    1.8  2  HTH_Crp_2       Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
       0.01   15.8   0.1      0.017   15.1   0.1    1.3  1  PadR            Transcriptional regulator PadR-like family
      0.011   15.6   0.5      0.011   15.6   0.5    2.8  3  HTH_IclR        IclR helix-turn-helix domain
      0.015   15.5   0.0      0.024   14.8   0.0    1.3  1  B-block_TFIIIC  B-block binding subunit of TFIIIC
      0.015   15.0   0.3      0.018   14.7   0.3    1.1  1  MctB            Copper transport outer membrane protein, MctB
      0.022   14.4   0.0      0.046   13.4   0.0    1.5  1  GntR            Bacterial regulatory proteins, gntR family
      0.028   14.4   0.0       0.16   11.9   0.0    2.0  2  HTH_36          Helix-turn-helix domain
      0.038   13.6   0.0      0.093   12.3   0.0    1.6  1  HTH_CodY        CodY helix-turn-helix domain
      0.065   13.6   0.0       0.14   12.5   0.0    1.5  1  Rrf2            Transcriptional regulator
      0.067   12.8   0.0       0.14   11.7   0.0    1.6  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.086   13.1   0.1       0.13   12.4   0.1    1.4  1  SgrR_N          Sugar transport-related sRNA regulator N-term
       0.14   11.9   0.0       0.19   11.4   0.0    1.2  1  DUF4423         Domain of unknown function (DUF4423)


Domain annotation for each model (and alignments):
>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         8   7.5e+03      22      32 ..      19      29 ..      13      33 .. 0.47
   2 !   55.7   1.7   3.4e-18   3.2e-15       1      62 []      45     104 ..      45     104 .. 0.97
   3 ?    0.1   0.0      0.79   7.5e+02       2      14 ..     132     144 ..     127     147 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 8
                EEHHHHHHHHT CS
      MarR_2 22 ltvgelarrlg 32
                l+ +++ r ++
  KIR60708.1 19 LAGAAVRRIMH 29
                33333444444 PP

  == domain 2  score: 55.7 bits;  conditional E-value: 3.4e-18
                 TT--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2   1 lgltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62 
                 lgltpa ar+L++L    +  l ++ la+ l+ ++s+v+ ++++L++aGLverr++p+D+R+
  KIR60708.1  45 LGLTPAVARALHVLDPDRP--LPARTLADQLRCDRSNVTTLVDKLEQAGLVERRADPTDRRQ 104
                 69************99999..****************************************5 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.79
                 T--HHHHHHHHHH CS
      MarR_2   2 gltpaqarvLaaL 14 
                 glt a++  L++L
  KIR60708.1 132 GLTDAELATLHEL 144
                 6777777777776 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.1   8.8e-17   8.3e-14       1      58 [.      47     104 ..      47     105 .. 0.93

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 8.8e-17
                 --HHHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR   1 ltltqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRskspeDrRe 58 
                 lt++  ++L+ l+   pl    La++l +++s+vt+++d+Le++Gl+eR+ +p DrR+
  KIR60708.1  47 LTPAVARALHVLDPDRPLPARTLADQLRCDRSNVTTLVDKLEQAGLVERRADPTDRRQ 104
                 5677778899999999*****************************************8 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         9   8.5e+03      24      46 ..      19      41 ..      17      42 .. 0.59
   2 !   45.7   0.2     7e-15   6.6e-12       6      68 .]      52     113 ..      47     113 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 9
      HTH_27 24 lcgrlnvedshisyslkkLtekG 46
                l+g+  +   h+++++++  e+G
  KIR60708.1 19 LAGAAVRRIMHVASAIRHRQEAG 41
                55555555567777777766655 PP

  == domain 2  score: 45.7 bits;  conditional E-value: 7e-15
      HTH_27   6 alvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                 a  Lh++  ++r+  ++ l++ l ++ s++   ++kL+ +GLver +d++drr+k++ +T++G
  KIR60708.1  52 ARALHVLD-PDRPLPARTLADQLRCDRSNVTTLVDKLEQAGLVERRADPTDRRQKTLVVTEAG 113
                 5579****.****************************************************99 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.2   1.3e-08   1.2e-05      16      57 ..      55      96 ..      47      99 .. 0.89
   2 ?   -1.6   0.0       3.2     3e+03      15      31 ..     129     145 ..     122     154 .. 0.67

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.3e-08
                HHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 16 lraLaraegltaselaerldlskntlsyHLrvLeeagLvevv 57
                l  L ++++l a  la++l+++++++   +++Le+agLve++
  KIR60708.1 55 LHVLDPDRPLPARTLADQLRCDRSNVTTLVDKLEQAGLVERR 96
                455699**********************************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.2
                 HHHHHSTCTTB-HHHHH CS
      HTH_20  15 ilraLaraegltasela 31 
                 +l+ L++ae +t+ el+
  KIR60708.1 129 LLAGLTDAELATLHELM 145
                 55555666666666665 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.4e-07   0.00013       6      69 ..      55     117 ..      52     126 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.4e-07
      HTH_34   6 lsyLasvdeadfvelkealeatdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGreaf 69 
                 l++L  ++   +++l ++l+   +n  + ++kLe+ag +e++ +  ++ ++ +l +T++Gr   
  KIR60708.1  55 LHVLDPDRPLPARTLADQLRCDRSNVTTLVDKLEQAGLVERRADPTDR-RQKTLVVTEAGRRMR 117
                 67777778888999**********************************.5555669****9764 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.7e-07   0.00035       4      57 ..      45      98 ..      42     112 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.7e-07
                CHHHHHCCCHCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB  4 lGLseyEakvYlaLlklgpatadeiaeelgvprskvYevLrsLedkGlVerekg 57
                lGL+   a++  +L    p+ a+++a +l  +rs+v   + +Le++GlVer+  
  KIR60708.1 45 LGLTPAVARALHVLDPDRPLPARTLADQLRCDRSNVTTLVDKLEQAGLVERRAD 98
                7888888899888889999********************************975 PP

>> DUF2250  Uncharacterized protein conserved in archaea (DUF2250)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.3e-06    0.0021      25      59 ..      66     100 ..      47     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.3e-06
     DUF2250  25 aksiakeleipleevrellkkLeelGLlervegkt 59 
                 a+++a++l+ ++++v+ l++kLe++GL+er    t
  KIR60708.1  66 ARTLADQLRCDRSNVTTLVDKLEQAGLVERRADPT 100
                 799**************************987665 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.8e-05     0.017       4      54 ..      52      96 ..      30     109 .. 0.84
   2 ?   -3.3   0.0       9.8   9.3e+03      40      49 ..     128     137 ..     122     142 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.8e-05
                HHHHHHHHCTTTCEEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2  4 ArfLlrlaeraggeielpltqeelAsmlGltretvsrilseLkreglisrg 54
                Ar L+ l+       + pl  + lA+ l   r+ v+ +  +L+++gl++r+
  KIR60708.1 52 ARALHVLDP------DRPLPARTLADQLRCDRSNVTTLVDKLEQAGLVERR 96
                555544411......3589999***************************75 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.8
                 HHHHHHHHTT CS
   HTH_Crp_2  40 rilseLkreg 49 
                 r+l+ L ++ 
  KIR60708.1 128 RLLAGLTDAE 137
                 4444444443 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.1   1.8e-05     0.017      32      72 ..      78     116 ..      67     119 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHH CS
        PadR  32 GslYpaLkrLekeglveseweesgegpprkyYrlTdaGrre 72 
                 +++ ++ ++Le+ glve++ +++  +++ k+  +T+aGrr 
  KIR60708.1  78 SNVTTLVDKLEQAGLVERRADPT--DRRQKTLVVTEAGRRM 116
                 56667889***********9985..99************86 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.8   3.6e+03      28      40 ..      17      29 ..      16      30 .. 0.79
   2 ?   15.6   0.5   1.1e-05     0.011       2      51 ..      51      96 ..      50      97 .. 0.87
   3 ?   -2.0   0.1       3.5   3.3e+03      37      47 ..     128     138 ..     127     144 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.8
                HTS-HHHHHHHHH CS
    HTH_IclR 28 tglpkStvhRlLq 40
                ++l+ ++v+R+++
  KIR60708.1 17 ADLAGAAVRRIMH 29
                6788899999876 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.1e-05
                HHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR  2 ldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                ++Ral++Ld     +++l  + lA+++   +S+v  l+  L++ G+ve+ 
  KIR60708.1 51 VARALHVLD----PDRPLPARTLADQLRCDRSNVTTLVDKLEQAGLVERR 96
                667777776....47889******************************85 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.5
                 HHHHHHHHTTS CS
    HTH_IclR  37 RlLqtLvelGy 47 
                 RlL+ L+   +
  KIR60708.1 128 RLLAGLTDAEL 138
                 56666654433 PP

>> B-block_TFIIIC  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.5e-05     0.024      23      61 ..      68     107 ..      65     113 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.5e-05
  B-block_TFIIIC  23 dLakeskqdprslfyrlksLekkgLIvkqsii.dsatkks 61 
                      La  ++ d ++++ ++++Le+ gL+++++ + d+ +k+ 
      KIR60708.1  68 TLADQLRCDRSNVTTLVDKLEQAGLVERRADPtDRRQKTL 107
                     57888999********************998665555555 PP

>> MctB  Copper transport outer membrane protein, MctB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.3     2e-05     0.018     159     235 ..      50     138 ..      12     142 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2e-05
        MctB 159 llgaallt.............aeeeasseeraavlaaLreaglvtvedetvapadavvvvteaegstsedaekaaailarlaaalderga 235
                 ++++al                +   + ++ ++++++L++aglv+ + +++ + +  +vvt ++g    d  ++ +++ rl+a+l ++  
  KIR60708.1  50 AVARALHVldpdrplpartlaDQLRCDRSNVTTLVDKLEQAGLVERRADPTDRRQKTLVVT-EAGRRMRDRVERVMSDSRLLAGLTDAEL 138
                 555555555555555555554445567888999****************************.888999***************9998876 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.9e-05     0.046      18      57 ..      58      96 ..      54      98 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.9e-05
                S-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        GntR 18 lrpGdkLPsereLaaefgVsrttvReALrrLeaeglverr 57
                l p  +L + r La+++  +r+ v    ++Le++glverr
  KIR60708.1 58 LDPDRPL-PARTLADQLRCDRSNVTTLVDKLEQAGLVERR 96
                7788999.89****************************98 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00017      0.16      29      55 .]      67      93 ..      63      93 .. 0.95
   2 ?   -0.3   0.0       1.1   1.1e+03       2      15 ..     132     145 ..     131     152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
      HTH_36 29 etlakrlglsknTvsraikeLeqlGyi 55
                +tla +l ++++ v + +++Leq+G++
  KIR60708.1 67 RTLADQLRCDRSNVTTLVDKLEQAGLV 93
                69***********************85 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.1
      HTH_36   2 rLspsaklllgsla 15 
                 +L++ + ++l++l+
  KIR60708.1 132 GLTDAELATLHELM 145
                 69999999999987 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.8e-05     0.093       5      37 ..      64      96 ..      62      98 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.8e-05
    HTH_CodY  5 LtaskiaDriGitrsvivnaLrkLesaGiiesr 37
                L a ++aD++   rs +   + kLe aG++e r
  KIR60708.1 64 LPARTLADQLRCDRSNVTTLVDKLEQAGLVERR 96
                568899*************************98 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00015      0.14      20      57 ..      58      95 ..      50      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00015
                SSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        Rrf2 20 eeeeepvsseeiaerqnispsylekilakLrkaglvks 57
                 + ++p+ ++++a++    +s +  ++ kL++aglv+ 
  KIR60708.1 58 LDPDRPLPARTLADQLRCDRSNVTTLVDKLEQAGLVER 95
                567789******************************85 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015      0.14      18      48 .]      64      94 ..      53      94 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
      HTH_24 18 isqreLAerlglSpstvnrrlkrLeeeGlIk 48
                ++ r LA++l   +s+v++ +++Le++Gl++
  KIR60708.1 64 LPARTLADQLRCDRSNVTTLVDKLEQAGLVE 94
                677889***********************96 PP

>> SgrR_N  Sugar transport-related sRNA regulator N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00014      0.13      24      54 ..      68      98 ..      61     139 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
      SgrR_N 24 elAdvlfCsrRhartlLkkmqeegwleWqpe 54
                 lAd l C r +++tl  k++++g++e ++ 
  KIR60708.1 68 TLADQLRCDRSNVTTLVDKLEQAGLVERRAD 98
                69***********************987765 PP

>> DUF4423  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0002      0.19      39      83 ..      66     107 ..      48     124 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
     DUF4423  39 peelakrlrpkisaeevekalefLlklgllkkdedgkyrqteksl 83 
                  ++la++lr  ++ + v + ++ L+++gl+++ +d    + +k l
  KIR60708.1  66 ARTLADQLR--CDRSNVTTLVDKLEQAGLVERRAD-PTDRRQKTL 107
                 4689*****..***********************9.444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1049.98
//
Query:       KIR60709.1  [L=854]
Description: transketolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-21   76.8   0.4    3.4e-21   75.4   0.4    1.7  1  Transketolase_C  Transketolase, C-terminal domain
    2.9e-21   76.0   0.0    5.9e-21   74.9   0.0    1.5  1  Transket_pyr     Transketolase, pyrimidine binding domain
    1.7e-20   73.2   0.0    3.4e-20   72.2   0.0    1.4  1  E1_dh            Dehydrogenase E1 component


Domain annotation for each model (and alignments):
>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.4   5.8e-25   3.4e-21       9     109 ..     734     832 ..     726     844 .. 0.86

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 5.8e-25
                      TSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSSEEEEEEE- CS
  Transketolase_C   9 gkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdgldapvkrvggp 102
                       +dvt+v++G+ v+++l+Aa++L++egi+ +Vvdlr++ pl  ++i   +  tgr++vv+e +++gG+g+ v+aal +    g  ++ +rv+  
       KIR60709.1 734 AEDVTIVTFGNGVPMSLRAAATLADEGIGSRVVDLRWIAPLPVADIVREASVTGRVLVVDETRRSGGVGEGVLAALVD---GGYVGAARRVASV 824
                      68****************************************************************************...6677777777777 PP

                      SS.SSSSG CS
  Transketolase_C 103 dv.iepgs 109
                      d  ++ g+
       KIR60709.1 825 DSfVPLGP 832
                      66333333 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.0   9.8e-25   5.9e-21       3     170 ..     514     688 ..     512     695 .. 0.88

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 9.8e-25
                   EEHHHHHHHHHHHHHCTTTTEEEEESSTH..HHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGG..HHGGHHH CS
  Transket_pyr   3 iawrkaeaealaellkedpevvligaDva..ggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangA..qiyadqa 95 
                   ++ ++ ++ ala  + + p +v++g+Dva  gg+++v+kgl++  g+ rv+d+ + E  +lg  +Ga lag ll++ e+q++ ++ +A  q++ ++a
    KIR60709.1 514 LTLAQSINAALADGMLDHPGMVVFGEDVAarGGVYGVTKGLRDRYGAARVFDTLLDETSILGLGLGAGLAG-LLPVPEIQYLAYLHNAedQLRGEAA 609
                   5778899****************************************************************.9************************ PP

                   HHCHHHHHT--EEEEESBSGGG..STTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHS..SS.SEEEEEE CS
  Transket_pyr  96 irsgeakgklkvgvvtrlpigv..gedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairr..edrkPvvlrl 170
                    ++  + g ++ ++v+r p  +  ++ G   +  + +a+lr +pgl +++P+ p ++++++r+ +++   d   +vl++
    KIR60709.1 610 TMRFFSSGAFRNPMVVRVPGLAyqEGFGGHFHNDNSLAVLRDVPGLVIAVPARPDDAAAMVRTCLASaaVDGSVCVLVE 688
                   *************88888865412344677788999**************************99987632334444444 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.0   5.6e-24   3.4e-20      81     275 ..     220     440 ..     204     463 .. 0.79

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 5.6e-24
                 SGTT-.-E..BTT..BEEE-SSTTTHHHHHHHHHHHHH..........................HHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT.. CS
       E1_dh  81 ggsrhelmyaekesrilggngivgaqvplvaGialaak..........................iegkkevailliGDgAanqGdvyealnlaalwk.. 151
                  g+rh++  ++    i+++ +++++  p + G+ la                                ++++++ +GD++ n+  + +a+n a  ++  
  KIR60709.1 220 AGGRHKVF-GRADLAIVPTTSTIASHLPRAVGAGLALErlrrrdpagrragadplgdvgqpprsPWPPDAIVVCSFGDASVNHASATAAFNTAGWYDht 317
                 55666333.455556666666666665555555555555566666666666666666666665544568899*********************987522 PP

                 ...--EEEEEEEESEETTEEHHHH-S---GGG..TTTTS-EEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHH CS
       E1_dh 152 ...lpvifvveNNkygisTeaekasaskeladrargvgipglrVdgnDplavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreevee 247
                    +pv+fv+e N+ gis+ + k+    +l       gi ++  dg+Dp+  yeA+ +Aa + r+  +p+++ l t+R+ gH   D   +yr++ e+  
  KIR60709.1 318 glrIPVLFVCEDNGLGISVRSPKGWVEATLRS---KPGIRYFSADGTDPVQAYEAAVEAAGWVRRHRRPAVLHLSTVRLMGHAGADAEAAYRSSGEIA- 412
                 222789*************9998877777666...589******************************************************999986. PP

                 HHHHH-HHHHHHHHHHHTTSS-HHHHHH CS
       E1_dh 248 vrkkkdpiqrlkelLvkkgvvseeelke 275
                 ++  +dp+   ++lLv++gv++ +el +
  KIR60709.1 413 ADLDRDPLLATARLLVAAGVATTDELLA 440
                 57778****************9998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 5791.13
//
Query:       KIR60710.1  [L=145]
Description: hypothetical protein TK50_22835 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-53  179.5   1.4    2.5e-53  179.3   1.4    1.0  1  DUF3052   Protein of unknown function (DUF3052)


Domain annotation for each model (and alignments):
>> DUF3052  Protein of unknown function (DUF3052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.3   1.4   1.4e-57   2.5e-53       1     124 [.      16     138 ..      16     139 .. 0.98

  Alignments for each domain:
  == domain 1  score: 179.3 bits;  conditional E-value: 1.4e-57
     DUF3052   1 aeklglkagqvvqelgwDdDvdedlreaiedligeelvdedadevvDvvllWwrddDgdLvdalvdaltsLadegviwlltpkagreghvepseiaeaa 99 
                 a+++g+++g+vv+e+g+D+Dvd+dlr+a++d +g elvded+devvD+vl+W+rd+DgdL + lvdal++Lad+gv+wlltpkagreghvepseiae+a
  KIR60710.1  16 ADRFGIEPGMVVMEMGYDEDVDQDLRDALTDRCG-ELVDEDTDEVVDAVLVWYRDGDGDLFELLVDALGPLADNGVVWLLTPKAGREGHVEPSEIAESA 113
                 799******************************9.8*************************************************************** PP

     DUF3052 100 ktaGLvqtssvsvskdwsgtrlvar 124
                 +taGL+qts+v++++dwsg+rlv r
  KIR60710.1 114 PTAGLQQTSTVNAGRDWSGARLVLR 138
                 **********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1229.28
//
Query:       KIR60711.1  [L=155]
Description: peroxiredoxin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-37  128.8   0.0    1.2e-37  128.6   0.0    1.0  1  AhpC-TSA   AhpC/TSA family
    3.3e-23   82.0   0.0    3.9e-23   81.8   0.0    1.0  1  Redoxin    Redoxin
    0.00068   19.6   0.0      0.001   19.0   0.0    1.2  1  SCO1-SenC  SCO1/SenC


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   0.0     2e-41   1.2e-37       1     123 [.       5     130 ..       5     131 .. 0.98

  Alignments for each domain:
  == domain 1  score: 128.6 bits;  conditional E-value: 2e-41
                 TTSB----EEESTTCEEEECHHHTT.SEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-..TTSHHHH CS
    AhpC-TSA   1 vgdkapdfelknadgetvslsdykg.kpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsD..eegkvak 96 
                 vg +apdf lk+++ ++v+lsd++g + v+l+fyp +++  C+ el++ +++++e+ + +v+v+ vsvds+++hk ++eke+++fpll+D  ++g+va+
  KIR60711.1   5 VGAEAPDFVLKDQNNQEVRLSDFRGkRTVLLVFYPLAFTGICQGELCEVRDNLNEYVNDDVQVLTVSVDSVYAHKIWAEKEGYQFPLLADfwPHGAVAQ 103
                 799**********************7788899******************************************************************* PP

                 HTT-EETTTTECSCEEEEE-TTSBEEE CS
    AhpC-TSA  97 aygvlkeekglalratfvidkegkiry 123
                 aygv+++ +g+a r+tfvidk g++r+
  KIR60711.1 104 AYGVFNDVAGIANRGTFVIDKAGVVRF 130
                 *************************97 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   6.6e-27   3.9e-23       2     131 ..       5     132 ..       4     143 .. 0.85

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 6.6e-27
                 TTSBB---ECCEETTCEEEEEHHHHTTSE.EEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH.TT-TSEEEE-..TTSH CS
     Redoxin   2 agdkaPdftlplaatdgnsvslsefkgkk.vvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgk.eglkfpvlsD..gsaa 96 
                 +g++aPdf+l++  +++++v ls+f+gk+ v+++f+p af++ C+ e++++++  +++ + +v+v+ v++d+  ++ + w++ eg +fp+l+D  + +a
  KIR60711.1   5 VGAEAPDFVLKD--QNNQEVRLSDFRGKRtVLLVFYPLAFTGICQGELCEVRDNLNEYVNDDVQVLTVSVDSV-YAHKIWAEkEGYQFPLLADfwPHGA 100
                 899*******88..**********999985888****************666665566999999977666655.566666655************9*** PP

                 HHHHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEE CS
     Redoxin  97 ftkalGlrleedaseglrtpryavidedgkvvyle 131
                 +++a+G  + +d  +g++ + ++vid+ g+v+  e
  KIR60711.1 101 VAQAYG--VFND-VAGIANRGTFVIDKAGVVRFAE 132
                 ******..5554.5669**************9765 PP

>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.7e-07     0.001       3      66 ..      11      73 ..       9      76 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.7e-07
   SCO1-SenC  3 pFelvdqdgeavteedlegkpslvffgFt.hCpdvCpttlanmaevldalgeeaekvqplfiTvD 66
                +F l dq+ ++v+ +d++gk +++ +++    + +C  +l ++++ l+++ ++  +vq+l+++vD
  KIR60711.1 11 DFVLKDQNNQEVRLSDFRGKRTVLLVFYPlAFTGICQGELCEVRDNLNEYVND--DVQVLTVSVD 73
                8*******************99999888615678************9999998..9********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1061.47
//
Query:       KIR60712.1  [L=399]
Description: pectate lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-73  245.7   8.2    7.5e-73  244.4   4.8    2.1  2  Pectate_lyase  Pectate lyase
    9.2e-05   22.6   2.1    0.00019   21.6   0.4    2.2  2  F5_F8_type_C   F5/8 type C domain
  ------ inclusion threshold ------
       0.96    9.0  13.7          2    8.0  13.7    1.4  1  PT             PT repeat


Domain annotation for each model (and alignments):
>> Pectate_lyase  Pectate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.015        90      99     139 ..      71     112 ..      62     138 .. 0.74
   2 !  244.4   4.8   1.3e-76   7.5e-73       2     202 ..     180     373 ..     179     375 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.015
  Pectate_lyase  99 gsgtstivgGgAkkasD.KvvQhNgagtvkiknFtaedfGkl 139
                    ++gt+ ++ GgA   s   +vQ  g+g+++  + t +d G +
     KIR60712.1  71 STGTISVKWGGATTVSSaVIVQASGGGSISGWQLTNHDTGAV 112
                    457999999999976551678999999876555555566665 PP

  == domain 2  score: 244.4 bits;  conditional E-value: 1.3e-76
  Pectate_lyase   2 talptasgskslkatitvkagetfDggmkrfdrgssckgqsegeekdavfiledGAtlknviiganqaeGvhckgsctienVwwedVcEDAitikg 97 
                     a+p+++gs+s++ t+ v++  tfDggmk++     ++++++ge++d++f++++G+tl+nvi+g+++ +Gvhc+g+ct++nVww+d++EDA+t+k+
     KIR60712.1 180 GAWPSSAGSVSISGTVNVSG--TFDGGMKTYC---CIGDGGQGESQDPMFKIANGGTLQNVILGSPAGDGVHCEGTCTLRNVWWNDIGEDAATFKQ 270
                    689*****************..**********...59**********************************************************9 PP

  Pectate_lyase  98 qgsgtstivgGgAkkasDKvvQhNgagtvkiknFtaedfGklyRscGncktngkrnvtienvtakngkslaginsnygdtatikklnikaskvkki 193
                    ++ gts+++gGgA++ sDK +QhNg+gtv+i++F+++  GklyR cGnc+t++ r+v i+nv ++++++laginsn+ dtati+  ++    +++i
     KIR60712.1 271 TNGGTSYVIGGGARSGSDKTFQHNGNGTVNISGFYLKGSGKLYRGCGNCSTSYTRHVRIDNVLVDDIDMLAGINSNWNDTATIT--RVVVIGSATI 364
                    9999********************************************************************************..6677777889 PP

  Pectate_lyase 194 ceeykgvek 202
                    c +ykgv k
     KIR60712.1 365 CGKYKGVPK 373
                    ******876 PP

>> F5_F8_type_C  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.4   3.2e-08   0.00019       5      74 ..      46     110 ..      42     150 .. 0.70
   2 ?   -0.4   0.1       0.2   1.2e+03      35      74 ..     289     331 ..     261     358 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 3.2e-08
                   SSCSSTTTGGGGGGSSSTTSSEEESSSSTTEEEEEEEEEEEEEEEEEEEECSSTTSSEEEEEEEEEESSS CS
  F5_F8_type_C   5 sseesgewpaaaaldGnkntaWsssssddkqwlqvdLgkpkkidgvvtqgrqdggnayvksykiqvsddg 74 
                   ss  +++ +  +++dGn++t+Ws+s+s+   +++v+ g ++++++ v++++++  ++ ++ +++   d g
    KIR60712.1  46 SSK-ASGTSYGNVIDGNTSTFWSPSGST--GTISVKWGGATTVSSAVIVQASG--GGSISGWQLTNHDTG 110
                   555.66778899***********99999..7*************999999965..567776666666655 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.2
                   EEEEEEEEEEEEEEEEEEEECSSTT...SSEEEEEEEEEESSS CS
  F5_F8_type_C  35 qwlqvdLgkpkkidgvvtqgrqdgg...nayvksykiqvsddg 74 
                   +++q + + + +i+g+ ++g +      +++ +sy+  v  d+
    KIR60712.1 289 KTFQHNGNGTVNISGFYLKGSGKLYrgcGNCSTSYTRHVRIDN 331
                   6777777788889999999887766777888888877777776 PP

>> PT  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  13.7   0.00033         2       9      28 ..     158     177 ..     156     186 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00033
          PT   9 qPTvqPTgqPtaqPTdqPta 28 
                  PT++PT  Pt++PT+ P+a
  KIR60712.1 158 TPTTSPTSGPTSGPTSNPGA 177
                 47777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2893.06
//
Query:       KIR60713.1  [L=94]
Description: hypothetical protein TK50_22855 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.12   12.5   0.0    1.2  1  Abhydrolase_4  TAP-like protein


Domain annotation for each model (and alignments):
>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.5e-06      0.12      53      94 ..      45      86 ..      17      93 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.5e-06
  Abhydrolase_4 53 akklakalggavlvtvegeGHgalaagntCvdkavdaYLltG 94
                    ++la al+ a+ ++v  +GH+al++  + + +a++++++ +
     KIR60713.1 45 NEALAGALPHARTLVVPRAGHDALNRAPRHLVDALAEFFTAP 86
                   67899*******************977777778888898866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       172  (0.0095934); expected 358.6 (0.02)
Passed bias filter:                      143  (0.0079759); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 755.72
//
Query:       KIR60714.1  [L=110]
Description: hypothetical protein TK50_22865 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 829.82
//
Query:       KIR60715.1  [L=274]
Description: hypothetical protein TK50_22870 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.31   11.3   4.3        0.9    9.8   1.1    3.1  3  CC        CC domain


Domain annotation for each model (and alignments):
>> CC  CC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.1     5e-05       0.9      19      29 ..      46      56 ..      44      57 .. 0.92
   2 ?   -1.1   0.0      0.13   2.3e+03      18      23 ..     131     136 ..     128     140 .. 0.77
   3 ?   -0.2   0.1     0.065   1.2e+03      19      25 ..     216     222 ..     214     223 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 5e-05
          CC 19 CPtGyvvvkGn 29
                CPtG++v++G+
  KIR60715.1 46 CPTGTTVIGGG 56
                **********8 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.13
          CC  18 vCPtGy 23 
                 +CP+G 
  KIR60715.1 131 SCPAGK 136
                 7**996 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.065
          CC  19 CPtGyvv 25 
                 CP+G+ v
  KIR60715.1 216 CPAGTRV 222
                 ****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2094.50
//
Query:       KIR60716.1  [L=265]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-19   68.3   0.4      2e-18   67.0   0.4    1.7  1  Abhydrolase_1  alpha/beta hydrolase fold
      7e-16   59.5  19.1    8.6e-16   59.2  19.1    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    1.6e-11   43.9   0.9    8.7e-11   41.5   0.4    1.9  2  Hydrolase_4    Serine aminopeptidase, S33
    5.9e-09   36.4   0.1      7e-09   36.1   0.1    1.2  1  Thioesterase   Thioesterase domain
    2.7e-05   23.0   0.0    3.6e-05   22.6   0.0    1.1  1  Ndr            Ndr family
      0.003   17.3   0.1     0.0038   16.9   0.1    1.3  1  Esterase       Putative esterase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.4   6.6e-22     2e-18       2     110 ..      21     120 ..      20     207 .. 0.89

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 6.6e-22
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyper 97 
                    +lv+lhG+ g ++++a   l pa+a  + +v+++Dl G+g++    ++     ++ s+add+ ++  +lg+++  ++G+S+GG +al +a ++p  
     KIR60716.1  21 PLVLLHGGYGAAESFAP--LLPAFAG-RRRVVTVDLQGHGRTADVDRP----LRFESMADDVAALIRHLGLGEADVLGYSLGGGVALRLAIQHPAL 109
                    8****************..*******.**************9666654....78999*************************************** PP

                    EEEEEEESECSSC CS
  Abhydrolase_1  98 Vkalvllgaidpa 110
                    V++lv ++a  p+
     KIR60716.1 110 VRRLVVVSA--PC 120
                    ********9..44 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2  19.1   2.9e-19   8.6e-16       1     215 [.      22     248 ..      22     253 .. 0.65

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 2.9e-19
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH...CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC....... CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldled...ladlaalldelaagggpvvlvGHSlGGalalaaapla.....lv 88 
                    ++llHG+ + a+s++  pL++++a++ +v+++Dl GhGr+ + +  l+    ++d+aal+++l+   g++ ++G+SlGG +al+   la     lv
     KIR60716.1  22 LVLLHGGYGAAESFA--PLLPAFAGRRRVVTVDLQGHGRTADVDRPLRFesmADDVAALIRHLG--LGEADVLGYSLGGGVALR---LAiqhpaLV 110
                    79****999999998..999999999899*********886666555555566777*******6..9*****************...444447677 PP

                    EE.EEES-..----TTTS----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHH.CCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEE.CTT-C CS
  Abhydrolase_6  89 vg.vlldppptalpagllaaalelllallallrllawlsreplprlfladed.adaawrarlarlaallaglgllpaaawadlpvpllvl.ggeDp 181
                    ++ v++++    ++ g   + +  + a+ ++++  +++    +p++++a  +   ++w a +a    ll  ++ +  a +a+l  p+l++ +++D 
     KIR60716.1 111 RRlVVVSA---PCRSGGWYPEVLAAMAAQDAATGERMRG--TPPHELYARIApRPQDWPALWAKTGELLRRDYDW-SAQVAALANPTLLVfADADS 200
                    77788888...4444442222222222222333334443..3555666644424688888888888888888844.22444444444444367777 PP

                    ....HHHHCHHCCCH.STTEEET.........CE...SSS-HHHHSHH CS
  Abhydrolase_6 182 ....lvprllerlla.qagarlp.........vvlpgaGHlphleepd 215
                        +v++++  l+   ++a+++          vlpg  H+ +l++p+
     KIR60716.1 201 vptsHVAEFFGLLGGgHRDAGWDgsdrpasrlAVLPGLTHYEMLDSPA 248
                    7777666665544444333333244444666699******99998875 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.4   2.9e-14   8.7e-11       7     125 ..      22     132 ..      19     159 .. 0.80
   2 ?    0.5   0.0     0.097   2.9e+02     182     205 ..     179     202 ..     164     218 .. 0.79

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 2.9e-14
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvagl 104
                  +vl+HG    ++ +a l  a+a +   v+++D +GhGr++    +  +f+++ dD+aa+++++   + +    +lG S+GG +al+++ ++p+ v++l
   KIR60716.1  22 LVLLHGGYGAAESFAPLLPAFAGR-RRVVTVDLQGHGRTA-DVDRPLRFESMADDVAALIRHLGLGEAD----VLGYSLGGGVALRLAIQHPALVRRL 113
                  799******************998.6899**********5.3334569************999965554....6**********************77 PP

  Hydrolase_4 105 ilsaPalkikaklkappllkl 125
                  +++++ ++      +p++l++
   KIR60716.1 114 VVVSAPCRSGGW--YPEVLAA 132
                  666655554422..3444443 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.097
  Hydrolase_4 182 rleeraakitlPllllhGeaDkvv 205
                  +  +++a++  P+ll+ ++aD v 
   KIR60716.1 179 DWSAQVAALANPTLLVFADADSVP 202
                  55677888899**********985 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.1   2.4e-12     7e-09       1     107 [.      20     129 ..      20     184 .. 0.76

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2.4e-12
                   EEEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST..SHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHH...HHHCT- CS
  Thioesterase   1 rpLflfppagGsasvfrslasklsdpvvevlavqlpgre..rdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArq...LesqGl 92 
                   rpL+l++++ G+a++f+ l  ++ ++  +v++v l g++   d   +  +e++a+ +a+ +r     g  ++ G+SlGg +A ++A q   L+++  
    KIR60716.1  20 RPLVLLHGGYGAAESFAPLLPAFAGR-RRVVTVDLQGHGrtADVDRPLRFESMADDVAALIRHL-GLGEADVLGYSLGGGVALRLAIQhpaLVRRLV 114
                   69***********************9.6666666666665578888889********9988865.5669**************99976222444444 PP

                   SEEEEEEESCCCCCC CS
  Thioesterase  93 avkslflidssapse 107
                    v +   +++++p++
    KIR60716.1 115 VVSAPCRSGGWYPEV 129
                   444444444444443 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.2e-08   3.6e-05      82     140 ..      68     126 ..      46     138 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.2e-08
                 HHHHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HH CS
         Ndr  82 lddladqllavldhfklksviglGvgaGAyilarfalkhperveglvLinitskaagwv 140
                  +++ad++ a++ h+ l ++  lG   G  + +r a++hp +v  lv +++ +++ gw 
  KIR60716.1  68 FESMADDVAALIRHLGLGEADVLGYSLGGGVALRLAIQHPALVRRLVVVSAPCRSGGWY 126
                 6899******************************************************7 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.3e-06    0.0038     119     160 ..      89     175 ..      71     225 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.3e-06
                 EEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CC........................................HCHHHC.....T CS
    Esterase 119 vaGqSmGGlgALilalkhpdrFgsvssfSpivnps........................................namWgq.....e 160
                 v+G S+GG +AL la++hp +  +  + S+++                                           +a+W +      
  KIR60716.1  89 VLGYSLGGGVALRLAIQHPALVRRLVVVSAPCRSGgwypevlaamaaqdaatgermrgtpphelyariaprpqdwPALWAKtgellR 175
                 89***************************6644447777777655555555555555555555555555555555555555444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1997.24
//
Query:       KIR60717.1  [L=222]
Description: deaminase/reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-10   39.7   0.0    2.1e-09   37.5   0.0    2.0  1  RibD_C    RibD C-terminal domain
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.022   14.5   0.0    1.1  1  DHFR_1    Dihydrofolate reductase


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   2.4e-13   2.1e-09       2     200 .]       7     187 ..       6     187 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 2.4e-13
                 EEEEEEEEETTSBSSCTTSSGCT.SS-HH..................HHHHHHHHHHTSSEEEEEHHHHHHHT--SS--SSCHSCHHHTT.GSS-EEEE CS
      RibD_C   2 yvilklavSlDGklaaaggeskw.itgee..................aradvhelraeadailvGrgtvladnpsltvrwvkkreaeadaearqpvrvV 81 
                 ++++ +a +lDG++aa++g+ +  + +++                   +  +++ +   da+l+Gr t   ++p+l v               + + +V
  KIR60717.1   7 KLVYYVASTLDGFIAAPDGSYDFfPLEPDvaahltagwpqtfptfshPQLGIDRPTGRFDAVLMGRAT---YDPALRVGITSPY--------AHLRQYV 94 
                 78888999***********9996444444888999999999*9999888889999999********88...6787777776664........89***** PP

                 EETTS-S-TTSH....HHHSSS-EEEEESSCSCHHHHHHCCESE-HHHHHHHHHHTT--EEEEEETHHHHHHHHHTTT-SEEEEEEESCE--TTSBCSS CS
      RibD_C  82 vdstlrvpldak....vltddaptlvatteeadkekveklkvrvdlkelleeLkergirsllveGGatLagsllraglvDelrlyiaPkllGgagktlf 176
                 ++++l   +++     v+ +d                        +++ ++eLk r ++++++ GG++Lag+ll +  vDel++  +P++ G+ g +l 
  KIR60717.1  95 FSRSLP--PSTGpgleVVAGD------------------------PVAFVRELKGRPGGDIWLCGGGNLAGQLLPE--VDELVVKLHPIVAGS-GIPLA 164
                 ****85..5555689899998........................*****************************99..***************.55555 PP

                 SSST-SSEEEEEEEEEEETTEEEE CS
      RibD_C 177 dgegfkalklklvksealgegvvl 200
                    gf a +++l++++ +++g+vl
  KIR60717.1 165 A-RGFAAHRFTLTGTQSFDSGLVL 187
                 5.557779***********99986 PP

>> DHFR_1  Dihydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.5e-06     0.022      39     115 ..      67     150 ..      60     157 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.5e-06
                 EEEEEHHHHH.CC-....S--TTCEEEEE-S-TT---.TTEE.EESSHHHHCCCCTTS..SEEEEEE-HHHHHHCGGG-SEEEE CS
      DHFR_1  39 pvimGrkTfe.slg...krpLpnrkniVltrnedlkv.egve.vvssleealalakee.keevfviGGaeiYkqalpladklyl 115
                 +v+mGr T++ +l+   + p  + +++V +r+   ++ +g e v+ +  ++++  k +   +++++GG+++  q+lp +d+l++
  KIR60717.1  67 AVLMGRATYDpALRvgiTSPYAHLRQYVFSRSLPPSTgPGLEvVAGDPVAFVRELKGRpGGDIWLCGGGNLAGQLLPEVDELVV 150
                 79*******9434344668************988655468884666777777766666699********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       165  (0.00920297); expected 358.6 (0.02)
Passed bias filter:                      139  (0.0077528); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1458.15
//
Query:       KIR60718.1  [L=383]
Description: polysaccharide pyruvyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-44  152.6   0.0    2.6e-44  152.3   0.0    1.1  1  PS_pyruv_trans  Polysaccharide pyruvyl transferase


Domain annotation for each model (and alignments):
>> PS_pyruv_trans  Polysaccharide pyruvyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.3   0.0   1.5e-48   2.6e-44       1     284 [.      19     302 ..      19     304 .. 0.90

  Alignments for each domain:
  == domain 1  score: 152.3 bits;  conditional E-value: 1.5e-48
                     -HHHHHHHHHHHHHHHHTT-EEEEEESSTTT--HHHHHHHHHTS-GGGEE......................EEE--E....EEEETT-HHHHHH CS
  PS_pyruv_trans   1 NyGDelilealvklLrelgpdaeiivltpdpsetkkllkvktpilkklskvllkrlrkkdi......ddaddviivGgdgtlgndgdlsrlpdal 89 
                     N+GDe+il +l+  Lr++ pda iiv++ +p  t +++++ +  ++  +                   +++d++i Gg g+ + d+ ++r+   l
      KIR60718.1  19 NLGDEAILSGLLADLRSHEPDARIIVFSRNPAHTAQAHPDVEAVPWEGVS----------RvdsaevLAELDLLILGG-GGILYDREARRY---L 99 
                     9****************************************998876654..........033456767888888888.678999999999...* PP

                     HHHHHHHS-SSEEEE-SEEE..-S-HHHHHHHHHHHHHTTEEEESSHHHHH.HHHHHHTT-EEE---GGGGG---HHHHHHS-...........- CS
  PS_pyruv_trans  90 rllflakkagkpviilgqgiGpflnealrkllkkilakadlisvRdelSaelleslglkrnveltpDpaflleqlapseilet...........d 173
                     r  ++a+ +g p+  +++g+Gp+++     ++++ la a+ ++vRd+ S+ +le++gl + + +t+Dpaflle+      l +            
      KIR60718.1 100 RVVRVAQERGLPLLTYAVGVGPLSDGVDTGMVRETLAGATEVTVRDQESRMVLEEAGLLNPITVTADPAFLLEPEEFPAHLLReegvpngkrlvG 194
                     **********************************************************************7775544444444699999988885 PP

                     -----------SS--EE---SSS---HH................................HH-TTS-HHHHHHHHHHHHHHHHHTSSEEEE--HH CS
  PS_pyruv_trans 174 krkylrvakssekdledleellakvydllle.kgarllllpivkkdglelddlyllllraaakkekvtildrfaspeellsliaradfvitsRlH 267
                      ++  +  +  + d++++ +l+a++ d l+   +a++l++p++  d  + +  +      +  +++  il++++sp+++l+l++++d+ +++RlH
      KIR60718.1 195 LSVREPGRAAERLDVDGYHRLIAQIADFLIHrIDAHVLFVPMERDDIRHSHGVMSH----MTAADRGRILHGDYSPRQVLGLMRHFDLAVGMRLH 285
                     55555555555577****************************************99....888999***************************** PP

                     HHHHHHHHT--EEEE-- CS
  PS_pyruv_trans 268 glifalsfgvPvigisy 284
                      lif+++ g+P++++ y
      KIR60718.1 286 FLIFSAMVGTPFLPLPY 302
                     **************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 2394.71
//
Query:       KIR60719.1  [L=68]
Description: hypothetical protein TK50_22900 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       193  (0.0107647); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 488.16
//
Query:       KIR60720.1  [L=173]
Description: mini-circle protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-48  164.2   0.6      3e-48  164.0   0.6    1.0  1  DUF664    Protein of unknown function (DUF664)
    3.2e-11   43.8   0.4    4.3e-11   43.4   0.4    1.1  1  DinB_2    DinB superfamily
    5.3e-05   23.2   0.0    8.6e-05   22.5   0.0    1.3  1  DinB      DinB family
    0.00047   20.9   6.1    0.00068   20.3   6.1    1.2  1  MDMPI_N   Mycothiol maleylpyruvate isomerase N-terminal domai


Domain annotation for each model (and alignments):
>> DUF664  Protein of unknown function (DUF664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.0   0.6   6.7e-52     3e-48       2     150 .]      24     168 ..      23     168 .. 0.96

  Alignments for each domain:
  == domain 1  score: 164.0 bits;  conditional E-value: 6.7e-52
                 HHHHHHHHHHHHHHHHTT--GGGTT--BTTB-S-HHHHHHHHHHHHHHHHHHHTT-S---TTTSHHTTTSSS---SS---HHHHHHHHHHHHHHHHHHH CS
      DUF664   2 LeafLdrqretllakleGLsdeqarrravpsstsllgLvkHvaevErgwfrrvlggeeevpldrsaadpdadfelaedetladllaeyrravaradavv 100
                 Le+fLd +r  +l+k++GLsd++arrr+vps t+l+gLvkH++ vEr+wf   l+  +     + +ad+ ++f+l   +t+++l+a y+ra+ar+++v+
  KIR60720.1  24 LESFLDFHRGIVLRKVAGLSDADARRRLVPSRTTLAGLVKHLTLVERNWFPALLAPGPGDVHVTGEADAVDSFTLDGSDTVESLVAGYERACARSREVA 122
                 89**************************************************99988666666667********************************* PP

                 TT--HHHHTSB-T-......SBHHHHHHHHHHHHHHHHHHHHHHHHHH-X CS
      DUF664 101 aaeldldetvrvpkapwgeevslrwvlvhlieetarHaGhadilRelidG 150
                 a + dld++v+   +p+  evslrw+l+h+ieetarHaGhadilRel+dG
  KIR60720.1 123 A-RFDLDHVVP---QPQLGEVSLRWILTHMIEETARHAGHADILRELTDG 168
                 *.*********...689999*****************************8 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.4   9.6e-15   4.3e-11       3     127 ..      29     158 ..      28     159 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 9.6e-15
      DinB_2   3 erararllalledlteeelnrqpspgkwsiawllaHlgnveelllerlr..........geeaprpgldpltppsaaealaylaevrarllallealtd 91 
                 + +r  +l  +++l++++++r+ +p ++++a l+ Hl++ve+ ++++l+          ge+ + ++++ ++  +++ ++a +++  ar +++ ++   
  KIR60720.1  29 DFHRGIVLRKVAGLSDADARRRLVPSRTTLAGLVKHLTLVERNWFPALLapgpgdvhvtGEADAVDSFTLDGSDTVESLVAGYERACARSREVAARF-- 125
                 667888888899*************************************888855555544444555555555566666666666666666666663.. PP

      DinB_2  92 adldrpltaphpglgkltlgdvllfvlqHeqhHleq 127
                  dld  ++ p   lg+++l+++l ++++++++H ++
  KIR60720.1 126 -DLDHVVPQP--QLGEVSLRWILTHMIEETARHAGH 158
                 .346666666..*********************986 PP

>> DinB  DinB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.9e-08   8.6e-05      16     140 ..      30     159 ..      20     168 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.9e-08
                 HHHHHHHHHHCT--CCCTT--SSTTS--HHHHHHHHHHHHHHHHHHHHH............SSSGGGT---------HHHHHHHHHHHHHHHHCT--HH CS
        DinB  16 wardrtldaiaaLpdeelkaengegfqsvkqtlnHvldveelwlsrleg..........eegapavddqterkeleeldalrealderliafldqltdl 104
                  +r+ +l+ +a L+d +  ++   +  +++++++H++ ve+ w+ +l            e++a   +  + ++++e l a +e++ +r ++++++    
  KIR60720.1  30 FHRGIVLRKVAGLSDADARRRLVPSRTTLAGLVKHLTLVERNWFPALLApgpgdvhvtgEADAVDSFTLDGSDTVESLVAGYERACARSREVAARF--- 125
                 689999999*************************************99999999999444444444444455555555555555555555555443... PP

                 HHHSEE------SS-EEHHHHHHHHHHHHHHHHHHH CS
        DinB 105 eretlldradagtvkmtlaelLaHvinHethHrGqi 140
                   +   + ++++ ++++l+ +L+H+i+   +H G +
  KIR60720.1 126 --DLDHVVPQPQLGEVSLRWILTHMIEETARHAGHA 159
                 ..45779999999*******************9976 PP

>> MDMPI_N  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   6.1   1.5e-07   0.00068      10     137 ..      37     156 ..      32     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.5e-07
     MDMPI_N  10 alvagLtdeqwaapspcpGWtvadlvaHlarsaralaaalaaegaesalardaaaalvtaadaeavdlaaslapeallaafraavtrlaaalaalppda 108
                 + vagL+d++ +++      t+a lv Hl+  +r++  al a+g ++ +++ +a+a           l  s++ e l+a  ++a++r ++  a+++ d+
  KIR60720.1  37 RKVAGLSDADARRRLVPSRTTLAGLVKHLTLVERNWFPALLAPGPGDVHVTGEADA------VDSFTLDGSDTVESLVAGYERACARSREVAARFDLDH 129
                 679*************99***************99999887765554444443333......88999******************************** PP

     MDMPI_N 109 iadrlgipggprslgeflrtrlvEavvHg 137
                  +++   ++g+ sl + l+ ++ E++ H+
  KIR60720.1 130 VVPQP--QLGEVSLRWILTHMIEETARHA 156
                 *****..9999999999999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1267.42
//
Query:       KIR60721.1  [L=290]
Description: carbohydrate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-27   96.4   0.9    7.1e-18   64.9   4.8    2.2  2  PfkB      pfkB family carbohydrate kinase
     0.0012   18.3   0.1     0.0012   18.3   0.1    1.9  2  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   6.9e-10   6.1e-06       4      96 ..       4      99 ..       1     148 [. 0.79
   2 !   64.9   4.8   7.9e-22   7.1e-18     192     295 ..     180     280 ..     176     284 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 6.9e-10
                EEEEEEEEEEEEEECSSH...TTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEE CS
        PfkB  4 vvviGealidliavsekl...egelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglaliv 96
                ++v+G + +dl   + +l   ++++ +v+ +  + G  ga vA a+  lg +va++ ++G D++Ge +++ l+ +gv  + v+  ++tr ++ l+ 
  KIR60721.1  4 LLVLGGLGVDLRVRVPQLplpAADSLTVPPIDLRIGNTGAGVALAARALGLRVAVVDVLGADPAGEVVRRALERAGVHAELVVDPGGTRRSVNLVD 99
                56666666777777777777644444666666666666666**************************************99997777777777664 PP

  == domain 2  score: 64.9 bits;  conditional E-value: 7.9e-22
                 HHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE.TTEEEEEEE..SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH CS
        PfkB 192 eElealtgekledieealaalhklkakgaktvvvtlGkeGalvve.kdgelkvpav.pkvkvvDttGAGDsfvggflaallegksleealrfanavAal 288
                 ++l +++g  l d + alaa+ +     ++t  vt+G++Ga +++ +   ++vpa+  +  vvDt+GAGD+f++g+laa l+g+ l++a+ +a +vAa+
  KIR60721.1 180 ADLVFVSGVRLGDRAGALAAALA-----PRTTAVTRGADGAELFTgGAPPVRVPAAvAPAPVVDTNGAGDAFAAGLLAARLRGAGLADAATYAARVAAA 273
                 56777888888999999999988.....8****************888899***99999**************************************** PP

                 HHTSSSS CS
        PfkB 289 vvqkkga 295
                 ++ + g 
  KIR60721.1 274 ACAHDGM 280
                 **99875 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.3e-07    0.0012      64     118 ..      39      98 ..      36     136 .. 0.79
   2 ?   -1.5   1.0      0.15   1.3e+03     162     250 ..     185     267 ..     170     280 .. 0.49

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.3e-07
                 SHHHHHHHHHHHHHT-EEEEEEETTS-H...HHHHHHHHTT-EEEEE..CCHHHHHHHHH CS
        PALP  64 GNhgralAaaaallGlkvtivvpadasp...ekvallrllGaevvev..ggdydeavaaa 118
                 GN+g+++A+aa++lGl+v +v   +a p     +++l++ G + ++v  +g++ ++v+++
  KIR60721.1  39 GNTGAGVALAARALGLRVAVVDVLGADPageVVRRALERAGVHAELVvdPGGTRRSVNLV 98 
                 9********************444444334478888888887666666688888888875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.15
                 EEE-SSSHHHHHHHHHHHHHSTT-EEEEE..EECTTCGGTTCCS..S.SS..B.SSS.CCSTCS..CGTTCCHHHHSEEEEEEEEEEHHHHHH CS
        PALP 162 vvpvGgGgliaGiaaglkerrpdvrvigv..epegsdalarslragrrvtvpvsdtiadglavg..spselafelldrlvdeivtvsdeeale 250
                 v +v  G  ++++aa+l+      r  +v   ++g++ +++++    +v+vp +   a+ ++++   ++  a  l++rl +   ++ d+++++
  KIR60721.1 185 VSGVRLGDRAGALAAALAP-----RTTAVtrGADGAELFTGGA---PPVRVPAAVAPAPVVDTNgaGDAFAAGLLAARLRG--AGLADAATYA 267
                 4455555556666666663.....2222211334555555555...55555555555555555543333333333333333..4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1913.82
//
Query:       KIR60722.1  [L=1099]
Description: helicase HelZ [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-57  194.3   0.0    3.6e-57  193.7   0.0    1.2  1  SNF2_N      SNF2 family N-terminal domain
      9e-42  142.2   4.2    9.8e-42  142.0   1.5    2.4  2  DUF3670     SNF2 Helicase protein
    1.8e-13   50.8   0.0    2.9e-13   50.1   0.0    1.3  1  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.7   0.0   6.1e-61   3.6e-57      52     348 ..     643     908 ..     631     910 .. 0.87

  Alignments for each domain:
  == domain 1  score: 193.7 bits;  conditional E-value: 6.1e-61
                 HHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH---------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  52 kqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapkllady 150
                 ++   GG+LaD+mGLGKTvq+lal +        d++       agptL+v+P+sl+ +W++e +r++++ ++   v++g +     +   + + ++++
  KIR60722.1 643 QSLGLGGVLADDMGLGKTVQLLALFA-------GDPA------DAGPTLLVCPMSLVGNWQREAARFAPKLRV--HVHHGAE---RARGDDFVAAVHAA 723
                 55678*********************.......2333......369***********************9976..5555554...3345567788999* PP

                 -EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 151 dvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllqrpi 249
                 d v+ttY+v +r+a        l  ++w+rvv+DE++ +kn  ++ aeav+ L +++r+ +tGTP+ n l+dl+++++f +++ +g   +f+k + +pi
  KIR60722.1 724 DLVLTTYSVAARDA------VDLAGIDWHRVVVDEAQAIKNASTRQAEAVRALPARHRIAVTGTPVENRLADLWSIMQFANPGLLGPAASFKKAYAEPI 816
                 **************......9****************************************************************************** PP

                 H.HHHHHHHHHHHTT-STTEE---GGGT..--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHHHHHHHHHH CS
                 x.xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 250 e.aqaekgrsrLlqllqrlmlrrakkdv..eknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilelllelrqacn 345
                 e + + + ++rL+ +  +++lrr k+d     +lP+k e+ ++++l+++++ +Y     +   +++a + +       ++ + +  +l  +++l+q+cn
  KIR60722.1 817 ErHGDAEAAERLRRMTGPFVLRRLKTDSsiISDLPEKLEMEVLCNLTAEQAALYR----AVVDDMMARIEST------DGIERRGLVLAAMTRLKQVCN 905
                 *8899999*******************954458**********************....3333333333333......233222349************ PP

                 --- CS
                 xxx RF
      SNF2_N 346 hpq 348
                 hp 
  KIR60722.1 906 HPA 908
                 *95 PP

>> DUF3670  SNF2 Helicase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.0   1.5   1.6e-45   9.8e-42       2     135 ..     447     581 ..     446     583 .. 0.96
   2 ?   -0.8   0.1      0.22   1.3e+03      24      47 ..    1007    1030 ..    1003    1091 .. 0.72

  Alignments for each domain:
  == domain 1  score: 142.0 bits;  conditional E-value: 1.6e-45
     DUF3670   2 vpdalelddeeaaefLkeaaeaLeaaGvgVllPrwlkkrarprltlklavkgp....asaakesklgldalldfdwelalGdeeLseeEldrLaeakrp 96 
                 +p+aleld e a++fL+e+a+ L aaG+gVllP w+ +r + rl+++l++++     + aa+++++gldal+d++we++lGde++s+eEl++Lae k+p
  KIR60722.1 447 TPEALELDVEGAHRFLREGAPVLHAAGFGVLLPGWW-RRPSARLGARLQARSRtapgTVAAADGGFGLDALVDYRWEVSLGDEPISAEELAALAELKTP 544
                 699*********************************.**************999999888889************************************ PP

     DUF3670  97 LvrlrgqWvevdpeelrraleflkrreekkltladaLra 135
                 Lvrlrg+Wve+dp +l++ l+ l++++  +lt+ad+Lr+
  KIR60722.1 545 LVRLRGRWVELDPGRLAAGLRLLRSAG--ELTVADLLRL 581
                 *************************65..9*******97 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.22
     DUF3670   24 LeaaGvgVllPrwlkkrarprltl 47  
                  L+aa   V++ rw++  ++++ t 
  KIR60722.1 1007 LTAANHVVHVDRWWNPAVEDQATD 1030
                  788888899999994444444443 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   4.8e-17   2.9e-13       2     111 .]     923    1036 ..     922    1036 .. 0.91

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 4.8e-17
                  HHHHHHHHH.HHTTTTSEEEEEESSHH...HHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSSEEEESGGGTSSSTSTTESEEEESS CS
  Helicase_C    2 kleallell.kleeeggkilifvntid...rlekvklllekkgikvavlhgelpqnereeileqfn..kgesdvLiatdvaerGidipkvnlVinfd 92  
                  kl++l e+l +  + g+k+l+f+++ +   +l     l  ++g +v+ lhg   + +r++++++f+  +g   ++++ +++++G++++ +n+V+++d
  KIR60722.1  923 KLARLEEILdEVLAAGEKALLFTQYAEfggMLR--GHLSARFGREVLFLHGGVGKADRDAMVTRFQsdAGPPLFVLSLKAGGTGLTLTAANHVVHVD 1017
                  566677777666799************999887..8999999***********************97667777************************ PP

                  SSSSHHHHHHHHTTSSSTT CS
  Helicase_C   93 lprnvtsyiqriGRtgRag 111 
                   ++n++   q+ +R+ R+g
  KIR60722.1 1018 RWWNPAVEDQATDRAFRIG 1036
                  *****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1099 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 7518.42
//
Query:       KIR60723.1  [L=85]
Description: hypothetical protein TK50_22925 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-14   52.4   0.7    5.9e-14   52.1   0.7    1.0  1  DUF3040   Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.7   3.3e-18   5.9e-14       2      78 ..       1      77 [.       1      80 [. 0.82

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 3.3e-18
     DUF3040  2 pLsehEqrvLeeiEraLaaeDPklaaalrggaararrrslrrlavlavllfva.GllllvlG.vaaaa.vvlgvvGfvvm 78
                +Ls+++qr++e+i r+L+++DP++ a+l   ++rar+r+ r l++l v+l+++ +++ +++G  a a+  ++ ++ ++vm
  KIR60723.1  1 MLSKEDQRRFEQITRQLRESDPEFFARL---DHRARARRGRYLMLLTVVLWASlPAATVLAGrPAGAIfAAVLLANAAVM 77
                9***************************...5555666668888888888888899******988888555666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 566.23
//
Query:       KIR60724.1  [L=704]
Description: hypothetical protein TK50_22930 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.1e-110  367.8   0.3   9.8e-110  367.5   0.3    1.1  1  DUF1800   Protein of unknown function (DUF1800)


Domain annotation for each model (and alignments):
>> DUF1800  Protein of unknown function (DUF1800)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.5   0.3  5.5e-114  9.8e-110       1     430 [.     233     700 ..     233     703 .. 0.91

  Alignments for each domain:
  == domain 1  score: 367.5 bits;  conditional E-value: 5.5e-114
     DUF1800   1 hllnRltfGarpgdvaevralgleawldqqlaepaslpdsaalearlaqlealkksaa......kaarkeerellrelaqarllravyserqLrerlvl 93 
                 hl++R+tfGa+p+ +a++r++g++aw+++ql ep++++ saa e +l++l++lk+s++      +a +++ ++  rel++a+++r ++serqL e++v+
  KIR60724.1 233 HLASRATFGATPKLLADIRRMGIDAWVREQL-EPEKIAPSAA-ELKLSELPTLKLSPQqlrdqrDALNERGAQPERELVDATIARQIWSERQLFEVMVD 329
                 899****************************.6666555553.567*****99999999999988889999999************************* PP

     DUF1800  94 fWsnhFnvsaekgesarallaayereairphalGnFrdLlkavakspaMlvYLdnaqsvkpdpkkkrglNENyARElmELhTLGvgggYtqaDVtelAr 192
                 fW + ++v a+ +   +++ a+++ +++r+halG++ ++l+a+ k+pa+l+YL++++s++++       NEN+ARE +EL+++Gv+ggYt++DV+++A 
  KIR60724.1 330 FWNDFLHVAADFD-GGEVYRASFDTDVVRRHALGSYPEMLVAANKHPALLLYLNQNDSRADAV------NENLARENLELYSVGVDGGYTEKDVRQAAL 421
                 ************9.88899999*****************************************......****************************** PP

     DUF1800 193 vlTGwtidaakkekakegafvfrpnrhdpgektvLgktipag......geeegeavldlLaehpatarfiarkLarrFvadnpppalverlaavFlksd 285
                 + TG +++        +g++vfrp+rh  g+ ++Lg t++++      +++ ++a++ ++a hp+ta+++a+ La+rFv+d+pp++lv+rla+++ +++
  KIR60724.1 422 LQTGRGVN--------DGTYVFRPERHYLGKVKILGFTHANNsddpkkADAAIDAYIAYIALHPSTAKYVAQSLATRFVSDTPPKSLVDRLAKTYAANK 512
                 *******7........69********************9999*****99************************************************** PP

     DUF1800 286 gdlkavlralltspefwsaegakiksPlelvvsalR..aaevt...................nakallqalnqlgqplfrppspaGypdtaeaWinsga 363
                 g +k++l +l++s+efw++ g+k+++P+e++v+++R  +  v+                     ++++ ++++lgq ++++p+p+Gypd+  aW ++g+
  KIR60724.1 513 GMIKPMLMTLFSSSEFWASVGQKVRRPMEYLVATYRtlG--VSpqaspafeqrdsrrtafaqGLRQVQDKMRELGQYPMGQPTPDGYPDVYVAWTSAGT 609
                 ******************99****************552..44556677888888899999888999******************************** PP

     DUF1800 364 llarlnfalela....ral.................kalvdallerllggalsaetraalaealskqeaakeaeeeak.....llalllasPe 430
                 +++ +n a el     + +                  a+vdal++rl++++lsa++r+ + +++  ++  +++ ++++     ++ ++lasP+
  KIR60724.1 610 MVNGWNEAGELIggrrT-QftytppeklvakppataGAYVDALAQRLVHQKLSARERELILDVAGVPA-GTRVDATFDgavaaVARAILASPQ 700
                 ************77651.156666667778888888889************************99887.344444444688888888899987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.22s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 5232.23
//
Query:       KIR60725.1  [L=459]
Description: hypothetical protein TK50_22935 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-26   92.7   0.5    4.3e-22   78.7   2.0    2.2  2  DUF1501     Protein of unknown function (DUF1501)
  ------ inclusion threshold ------
        6.1    6.8  15.1       0.14   12.1   6.3    2.8  2  TAT_signal  TAT (twin-arginine translocation) pathway signal 


Domain annotation for each model (and alignments):
>> DUF1501  Protein of unknown function (DUF1501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   2.1e-05      0.19       4      85 ..      99     187 ..      97     203 .. 0.86
   2 !   78.7   2.0   4.8e-26   4.3e-22     128     342 ..     193     411 ..     186     426 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.1e-05
     DUF1501   4 vIvlflaGGpsqldtfdpkpdleklagkplp...kfkktgesgleisellphl..aeladdlalvrsmstelan..hgqaallmntGsq 85 
                 +I++fl GG ++l+++ p +d   ++ +p     + +     g++++++++ l     a +l++v+++s+e     h qaa + n G  
  KIR60725.1  99 LIHVFLYGGLDGLSLVAPADDPVLAKARPDLllgDDSLALGRGFKLTSAFAPLekWLKAGQLGFVPAVSDERLSrsHFQAADACNLGGL 187
                 8********************99999998669998888889999******99955456888*******999998899999988888765 PP

  == domain 2  score: 78.7 bits;  conditional E-value: 4.8e-26
     DUF1501 128 gsGflgralqgltlrssadpvldlsppagvteerqrrrldllkklnqehl.qrkndeeleariasyelafralmqseapeafdlsdeteatr.eaygrd 224
                 g G+l ++++ l   ++ ++ + +  + + + ++   +l++ + +  +   ++k ++++e++i+ +      ++q+++++++   + +++++ + y  +
  KIR60725.1 193 GRGWLDSLVDNLGKGTAFRS-VGIGSTLPRSLVGTNGALAINSVGSLRLNgDEKYRAATEKAIRGLFTGINHPVQEAVQDGLGALATAQKLAaKPYQPA 290
                 66666666666666333322.344444444444444444444433333334555566666666665555555888888888766555555540445555 PP

     DUF1501 225 a.ketks...fgaqcLlarrlvergvrfvqvylggWDtHsnlekahkkla....kelDqalaaLlkdLkqrGllddTlVvwagEFGRtpkingnkGrDH 315
                 + ++  +   ++ q L++    +++vr+++v +gg+DtH+n+ ++ + ++     el+ alaa+ +dL++     d+++++ +EFGR++++ng  G+DH
  KIR60725.1 291 EgVK-YEgvgYAFQQLAQLIKGGANVRVATVGMGGYDTHENQGTRPGGQLhrrlGELAAALAAFFTDLGD--AAADVTIMVSSEFGRRVASNGG-GTDH 385
                 5433.225689*******************************9998888777779***************..**********************.**** PP

     DUF1501 316 npkgftvwlaGGgvkgGrvyGatdelg 342
                  ++g +v ++ G   +G   Ga++ l 
  KIR60725.1 386 -GHGGVVTVLSGRKLAGSLLGAWNGLT 411
                 .**********************9876 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   6.3   1.5e-05      0.14       2      21 ..      63      82 ..      62      87 .. 0.89
   2 ?   -2.0   1.5      0.43   3.9e+03      17      22 ..     347     352 ..     346     355 .. 0.45

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.5e-05
  TAT_signal  2 lSRRdFLKgsAAaaAAaalg 21
                ++RR+F  g+AA+a A+a++
  KIR60725.1 63 VTRRTFVAGAAATATALATA 82
                79************999998 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.43
  TAT_signal  17 Aaalgg 22 
                 Aaal++
  KIR60725.1 347 AAALAA 352
                 333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3266.24
//
Query:       KIR60726.1  [L=472]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-12   47.5   5.5    1.9e-12   47.4   3.2    2.1  2  Ferric_reduct  Ferric reductase like transmembrane component
    2.5e-10   41.0   0.0    4.6e-10   40.1   0.0    1.5  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    1.3e-06   28.4   0.0    2.3e-06   27.6   0.0    1.3  1  FAD_binding_8  FAD-binding domain
  ------ inclusion threshold ------
      0.011   16.0   0.0      0.022   15.1   0.0    1.4  1  FAD_binding_6  Oxidoreductase FAD-binding domain


Domain annotation for each model (and alignments):
>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   3.2   4.3e-16   1.9e-12       1     124 [.      81     203 ..      81     204 .. 0.92
   2 ?   -0.7   0.0      0.33   1.5e+03      81      96 ..     221     236 ..     210     253 .. 0.74

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 4.3e-16
  Ferric_reduct   1 lGiaalillplalllalRnnflepltglsldklllfHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynllGvla.lllliilai 95 
                    +G++a +ll +++l++ R   +e  +  + +++ ++H+ +g ++++ +l+H  l+++ + ++  ++  +   +ll++++ ++G +a   +l++l +
     KIR60726.1  81 TGLVAGYLLLVQVLMMSRLGAFE--RSAGAERVSRWHRDVGATLLVAVLAHLSLIVVGYAAEGGRSVLGQAGELLADYEDMVGAFAaAGILVLLGL 174
                    69999***********9998888..55569999****************************999999999999999999999988615799999** PP

  Ferric_reduct  96 tSlkfirrrlsyelFyylHhllyvaylll 124
                    t ++ +rr l yel+y lH + y+a++l+
     KIR60726.1 175 TGVRALRRALPYELWYHLHLASYLAVALG 203
                    *************************9986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.33
  Ferric_reduct  81 llGvlalllliilait 96 
                    ++G++a ++l++ a++
     KIR60726.1 221 RTGWIAAYALVVAALL 236
                    6888888888887765 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0     1e-13   4.6e-10       1     106 [.     356     450 ..     356     453 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1e-13
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEE.ESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvav.vsreeagweggkgrvqdalleellslkkeethv 95 
                    +iagG+GiaP+r++l+++         ++l+y +rt +d+l+r el+ la+++     v++v  sr++ g+   +  +++  l++l++ + +  +v
     KIR60726.1 356 LIAGGSGIAPLRAMLEELPPG------AALIYRARTPDDVLLRRELDWLAQERGT--DVWYVvGSRDDPGP---RQVLSAPGLRKLVP-DVARRDV 439
                    7**********9999988775......79********************888877..68888467777777...89999999999999.89***** PP

                    EEECSHHHHHH CS
  NAD_binding_1  96 yvCGppgMika 106
                    y+CGppg+++ 
     KIR60726.1 440 YLCGPPGLVEQ 450
                    *******9985 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   5.2e-10   2.3e-06      16      81 ..     266     329 ..     250     350 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 5.2e-10
  FAD_binding_8  16 liklkvskpkkslkykaGqyvyini.pslsklfwqsHPFtiasapeddklslvikvksgltkklakk 81 
                     i+l++++ ++ l    Gq+++  +  + +  +wqsHPF++  a++   l l +kv +g t  l+++
     KIR60726.1 266 SIYLTGRRLHR-LDLLGGQFLRWRFlAPGC--WWQSHPFSVSAAANGRWLRLTVKVVGGHTADLREV 329
                    36778888888.9************99999..6****************************999875 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   4.9e-06     0.022       4      97 ..     254     344 ..     251     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.9e-06
                    EEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEECETTCCEEEEEE.BSSTTECCE.EEEEEE--TT-HHHHHHHCS-TT-EEEEEEEE-SE CS
  FAD_binding_6   4 ltekeevsedtrifrfklpsekqklglpvGqhvflrlkikgeaviRsYtpissenekGe.lellvkvypgGkmsqaLdelkigdtleikGPlGkf 97 
                    ++++   s+dt  + ++   + ++l+l+ Gq++  r+ ++g   ++s  +  s  ++G+ l l vkv+  G  +  L+e++ g+ +  +GP G+f
     KIR60726.1 254 VADVVAESRDTVSIYLTGR-RLHRLDLLGGQFLRWRFLAPGC-WWQSHPFSVSAAANGRwLRLTVKVV--GGHTADLREVEQGTRVWAQGPAGTF 344
                    6666677888888888766.8899************999995.8888887777789998358888887..668999*****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3567.14
//
Query:       KIR60727.1  [L=186]
Description: FMN-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-06   26.7   0.3    1.2e-05   25.8   0.3    1.5  1  FMN_bind  FMN-binding domain


Domain annotation for each model (and alignments):
>> FMN_bind  FMN-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.3   6.8e-10   1.2e-05       4      68 ..     107     182 ..     106     183 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 6.8e-10
                 SEEEEEEEEETTTSBEEEEEEEESS.S-TTTGGG.........CTTHHHH........SSEEETCTTBHHHHHHHHHHHHHHH CS
    FMN_bind   4 gtikvlvtvkdgdgtItgievlehs.ETpglgsk.........avkkdgg........dqevDaiSGATissravkdavnaal 68 
                 g+++v + + +g  +I++   le   ET +  ++                        + e+D++SGAT +s+ + + ++aa+
  KIR60727.1 107 GNVQVQIVL-SGT-RIVDAVALELPqETAQSDRRsdqvdgrysG-----TsgqvvqrqSAELDTVSGATATSESYRRSLQAAI 182
                 678888888.644.799999998555998875534555544430.....133455567789********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1558.61
//
Query:       KIR60728.1  [L=223]
Description: DNA primase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-17   62.6   5.5    7.1e-17   62.2   5.5    1.1  1  Prim-Pol  Bifunctional DNA primase/polymerase, N-terminal


Domain annotation for each model (and alignments):
>> Prim-Pol  Bifunctional DNA primase/polymerase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   5.5   3.9e-21   7.1e-17       1     150 [.      24     181 ..      24     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 3.9e-21
    Prim-Pol   1 aleyaergwpvvPl...............ppggKrPlgkkwekdattdpeqirawwkkhpranvglatgpsglv.vlDvDgkeagaealarLareeg.. 81 
                 a +ya++gw+v P                p+ g +P++++we +at dp++++ ww+++p  +v l+tg  + + vl v+++  g+++l+++ ++    
  KIR60728.1  24 AVRYAAHGWEVTPGaclarsrfvcgragcPTVGCHPALQEWERAATADPARVATWWRSRPH-GVLLPTG--RAFdVLEVPAH-LGRHVLDSIGTHPAga 118
                 679******************************************************8775.*******..8888*******.9*******99887788 PP

    Prim-Pol  82 ..plPetvtvttgstgggrhlyfraPdglalpnsagklapgldlr..geggyvvappsvhetgraYrwledp.r 150
                    +P+   v t++  g++ +++r P++   + + +   + + +   g g+ + app++   ++++rw+ +p  
  KIR60728.1 119 gvRGPV---VVTPT--GRWMFLVR-PGDPL-RPELE---HCFHVVrhGPGSWIAAPPTRL-PEGPVRWAVAPeQ 181
                 888888...66788..77777777.97333.33333...33444323778888*******.799*****66542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1652.51
//
Query:       KIR60729.1  [L=409]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-10   39.1   0.6    5.6e-09   36.2   0.2    2.7  2  HTH_31    Helix-turn-helix domain
    4.8e-06   26.5   0.0    8.8e-06   25.7   0.0    1.5  1  HTH_19    Helix-turn-helix domain
    0.00041   20.4   0.0     0.0018   18.3   0.0    2.2  2  HTH_3     Helix-turn-helix


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.2   9.4e-13   5.6e-09       2      60 ..       6      64 ..       5      67 .. 0.94
   2 ?   -0.8   0.0      0.33     2e+03      33      56 ..     385     407 ..     382     409 .] 0.53

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 9.4e-13
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpae 60
                +G++++ +R r+ Lsq+  A+rlg s+s++ ++E+G r + + +vl  +a +l +d+ +
  KIR60729.1  6 IGRRVAYWRGRRKLSQQVFADRLGKSKSWVDKVERGVRRLDKFSVLYEIAYILEVDVQL 64
                799***********************************999*************99876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.33
      HTH_31  33 rlEqGrrgrpspavlealaralgl 56 
                 ++ + +rg  +p+ ++ la+  g+
  KIR60729.1 385 DVLRRTRG-APPSLIAELAEHMGV 407
                 44455555.445566666655554 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.5e-09   8.8e-06       1      63 [.       7      69 ..       7      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.5e-09
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aelllkiaealgidleyllqge 63
                G+r+   R  ++l+q+  a+rlg s+s   + E g +  ++  ++l+ ia++l++d++ ll ++
  KIR60729.1  7 GRRVAYWRGRRKLSQQVFADRLGKSKSWVDKVERGVR-RLDkFSVLYEIAYILEVDVQLLLGKD 69
                8999999****************************88.77779***************999876 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     3e-07    0.0018       3      37 ..      12      46 ..      10      65 .. 0.80
   2 ?   -3.3   0.0       1.6   9.7e+03      13      21 ..     399     407 ..     394     408 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3e-07
                HHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSB CS
       HTH_3  3 elRkqlglsqeeLAeklGvsrstisriEnGernPs 37
                 +R  ++lsq+ +A++lG s+s + + E+G r+ +
  KIR60729.1 12 YWRGRRKLSQQVFADRLGKSKSWVDKVERGVRRLD 46
                578899************************76654 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.6
                 HHHHHHHTS CS
       HTH_3  13 eeLAeklGv 21 
                 +eLAe +Gv
  KIR60729.1 399 AELAEHMGV 407
                 567776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2889.30
//
Query:       KIR60730.1  [L=200]
Description: flavoprotein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-19   69.0   0.0    4.6e-19   68.7   0.0    1.1  1  Flavoprotein  Flavoprotein


Domain annotation for each model (and alignments):
>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   2.6e-23   4.6e-19       5     135 ..      23     162 ..      20     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 2.6e-23
                   EEE-SSCGGGCHHHHHHHHHHTTEEEEEEESCHHHHCCHHGGS....TCSSHHHHHHCT...........TESEEEEEEEEHHHHHHHHTT--SSHH CS
  Flavoprotein   5 lgiTGsvaaikalellekLkkegievqvvltkaAkkfiskeklklaaredpilhielrr...........wadllviaPasantlakianGiadnll 90 
                   ++++Gs  a  + +l++  +++g++v vv t++++kf+++  l+ ++  ++       r           +ad++v++Pa+ nt+ k a+Gi+d+l+
    KIR60730.1  23 VIACGSPLASHVGRLVDLAQQDGWDVCVVTTPDGAKFVDRPALARQT--GHPVRS---RyknpgdpdvlpPADAMVVCPATSNTVNKWAAGITDTLA 114
                   789999999******************************77555544..333333...133467777777*************************** PP

                   HHHHHT..HCCTTEEEEE.--HHCCTCSTCHHHHHHH.HT........ CS
  Flavoprotein  91 tlilra..takkpiliaPamnpamyenpqtlknlekl.eegvtvikPs 135
                   + +l    ++ +pi+ +P  n am  +p+    l++l e gv v+  +
    KIR60730.1 115 LGLLVEgqGKGVPIVAVPFTNVAMAGHPAFRASLARLgEWGVDVLFGD 162
                   *9995578999**************************88999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1458.18
//
Query:       KIR60731.1  [L=321]
Description: hypothetical protein TK50_22970 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-66  224.9   0.0    1.5e-66  224.6   0.0    1.0  1  NIF3      NIF3 (NGG1p interacting factor 3)
  ------ inclusion threshold ------
      0.039   14.0   0.1      0.072   13.1   0.1    1.3  1  FlpD      Methyl-viologen-reducing hydrogenase, delta subunit
      0.048   13.1   0.2       0.11   11.9   0.1    1.6  2  PGA_cap   Bacterial capsule synthesis protein PGA_cap


Domain annotation for each model (and alignments):
>> NIF3  NIF3 (NGG1p interacting factor 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.6   0.0   2.5e-70   1.5e-66       1     242 [.      15     261 ..      15     263 .. 0.96

  Alignments for each domain:
  == domain 1  score: 224.6 bits;  conditional E-value: 2.5e-70
        NIF3   1 eivevleelaplelaeswDnvGlqvgdpekevkkvllaldlteevleeAiekgadliithHPlifkplkrlteddykkrllkkliknnislysaHtnlD 99 
                 ++v++l + +p  +ae+wD vGl +g+p++ v++v + +d+ +e+++eA+++gad+i++hHPl+++++++++  ++k+r++++lik++++ly aHtn D
  KIR60731.1  15 DVVAALARRYPTTWAEDWDRVGLVLGEPTARVRRVSCVVDVVPETVAEALAAGADMIVAHHPLLLRGVSSVAPTTFKGRIVHDLIKADVALYVAHTNAD 113
                 68999********************************************************************************************** PP

        NIF3 100 aapgGvndwlakalglekieplepskeek..keeeeglgrigeleepvsleelakklkkklglek..vrvagdldkkvkkvaicaGsGaslieeakakg 194
                  a  Gv+d la+++gl+ ++pl+p    +  +++++g+grigel++p++l+el +++++ l+++   vr+agd+ ++v++ a+ +GsG+ ++ +a a+g
  KIR60731.1 114 VADPGVSDALAARFGLTGLRPLQPPAPGSpaAGAGRGIGRIGELPRPMTLAELTRHAAAVLPATAwgVRAAGDPGRMVRTLAVSGGSGDAFLGAATAAG 212
                 ***********************9875556688999*************************888788******************************** PP

        NIF3 195 aDlliTGelkhhealda.kekgiavidvgHyatErvflealaelLkekl 242
                 +D+++T++l+hh a +   + g a++d+ H+atEr++l++la+ L+++l
  KIR60731.1 213 VDAYLTSDLRHHPAGEHlAAGGPALLDAAHWATERPWLDDLAAALRAEL 261
                 **************999355579**********************9986 PP

>> FlpD  Methyl-viologen-reducing hydrogenase, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.2e-05     0.072      26      56 ..      42      72 ..      32      75 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
        FlpD 26 pnvriirvpCsgrvdpefilkalekGadgVl 56
                p+ r+ rv C+  v pe +++al++Gad ++
  KIR60731.1 42 PTARVRRVSCVVDVVPETVAEALAAGADMIV 72
                678999**********************885 PP

>> PGA_cap  Bacterial capsule synthesis protein PGA_cap
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.9e-05      0.11     214     241 ..      58      85 ..      47      96 .. 0.81
   2 ?   -2.1   0.0      0.34     2e+03     207     230 ..      86     109 ..      84     110 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.9e-05
     PGA_cap 214 elaralidaGadvviGhhpHvlqgieiy 241
                 e + ++++aGad++++hhp  l+g+  +
  KIR60731.1  58 ETVAEALAAGADMIVAHHPLLLRGVSSV 85 
                 66778999**************999766 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.34
     PGA_cap 207 kpadeqrelaralidaGadvviGh 230
                  p++++ +++++li+a + + ++h
  KIR60731.1  86 APTTFKGRIVHDLIKADVALYVAH 109
                 58899999*********9999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2116.17
//
Query:       KIR60732.1  [L=245]
Description: Zn-ribbon-like protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-10   40.5   2.6    5.7e-10   39.2   2.6    1.7  1  zf-RING_7      C4-type zinc ribbon domain
     0.0063   14.5   2.0     0.0077   14.2   2.0    1.0  1  V_ATPase_I     V-type ATPase 116kDa subunit family
  ------ inclusion threshold ------
      0.018   15.2   4.0      0.018   15.2   4.0    2.2  2  Seryl_tRNA_N   Seryl-tRNA synthetase N-terminal domain
      0.021   14.6   0.2       0.94    9.3   0.4    2.7  2  GP57           Phage Tail fiber assembly helper gene product 
      0.092   12.1  12.3       0.13   11.6  12.3    1.3  1  DUF4407        Domain of unknown function (DUF4407)
       0.41    9.8   2.5       0.83    8.8   2.0    1.6  2  ISG65-75       Invariant surface glycoprotein
       0.51   10.4  10.4        4.4    7.5   0.5    2.3  2  BRE1           BRE1 E3 ubiquitin ligase
       0.55   10.4  19.2        1.3    9.2  18.8    1.8  1  ATG16          Autophagy protein 16 (ATG16)
        1.4    9.2   7.2         10    6.4   1.2    2.5  2  Spc24          Spc24 subunit of Ndc80
        8.7    5.1  17.9        1.1    8.1   3.8    2.0  2  Spc7           Spc7 kinetochore protein
        9.8    6.5  15.6       0.87    9.9   3.4    3.4  3  ABC_tran_CTD   ABC transporter C-terminal domain


Domain annotation for each model (and alignments):
>> zf-RING_7  C4-type zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   2.6   3.5e-13   5.7e-10       1      33 []     203     237 ..     203     237 .. 0.97

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 3.5e-13
                 EETTT--B--CCHHHHHCCS..TB-EE-TTT--EE CS
   zf-RING_7   1 tCgGChmelppqvlselrag..devvtCpeCGRIL 33 
                 +CgGC++el  ++ +++r++  d+vv+C+eC RI+
  KIR60732.1 203 RCGGCRLELYGADMARIRKAapDDVVRCEECRRIM 237
                 7*******************9*************6 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   2.0   4.7e-06    0.0077      12     142 ..      17     164 ..      10     190 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.7e-06
  V_ATPase_I  12 rDlnedvnafqrkfvkevrrcdemerklrfleeeieklekavikeeea..........eesleapeekeldel......eeelekleeelkelnenlek 94 
                 +D+   + a  r+   e+  ++ + r+l+ le+e  +++ av   +++          +   +a+++k+  +l       +ele l++el +ln+ +++
  KIR60732.1  17 IDTTLAQLAHRRRTLPELAELETLARELSALEDERVRAQVAVDDLDRDiariekdveqV---RARKSKDEARLaagsgpARELEALQHELVSLNRRQSD 112
                 56666666777888888899999999999999998884544444444378887664331...3333332233334444479****************** PP

  V_ATPase_I  95 lkkelnelvelkavlekakefleeeeeeeeeeeseeeeee....keeeeeee 142
                 l++   el+e+++  + + + +e+++++++e+++ +e+++    ++ ++eee
  KIR60732.1 113 LEDAELELMEQRETAQGVLDGIERRAADARERRAAAERRRddalADIAKEEE 164
                 *************999998888876333333222222222122122222222 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   4.0   1.1e-05     0.018      23      99 ..      36     112 ..      11     116 .. 0.81
   2 ?   -0.4   0.8      0.81   1.3e+03      32      80 ..     118     166 ..     106     173 .. 0.54

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-05
                   CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  23 edkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99 
                   e + +  el +l+++r ++qv++++l +   ++ k +++  ++k + e+ +a ++    el+al+ el  l+ ++ +
    KIR60732.1  36 ELETLARELSALEDERVRAQVAVDDLDRDIARIEKDVEQVRARKSKDEARLAAGSGPARELEALQHELVSLNRRQSD 112
                   67778899************************************99999*******************999877665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.81
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHH CS
  Seryl_tRNA_N  32 leldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelk 80 
                   lel e+r+++q  l+ + ++   + +  + a ++ +da + ia+ +e k
    KIR60732.1 118 LELMEQRETAQGVLDGIERRAADARERRAAAERRRDDALADIAKEEEFK 166
                   5566666666666665555555555555555555555555555555554 PP

>> GP57  Phage Tail fiber assembly helper gene product 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.4   0.00058      0.94      10      47 ..      99     136 ..      95     141 .. 0.91
   2 ?    1.9   0.0      0.12   1.9e+02       3      26 ..     170     194 ..     168     204 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00058
        GP57  10 lsaeivtlksrildtqdqaarlmeeskilqGtlaeiar 47 
                 l  e+v+l  r  d +d    lme+    qG l  i r
  KIR60732.1  99 LQHELVSLNRRQSDLEDAELELMEQRETAQGVLDGIER 136
                 7789*****************************99987 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.12
        GP57   3 eqtveqklsaeivtlksril.dtqd 26 
                  q +   l ae+vtl  +i  dt  
  KIR60732.1 170 RQPLAGDLPAELVTLYDKIRaDTGL 194
                 566777899******9999525554 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  12.3     8e-05      0.13     112     237 ..      21     170 ..       5     200 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8e-05
     DUF4407 112 laeeqqeeakelkeqlaaa............ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaake.....kkaqld 193
                 la+ ++                         l  el++le+++ ++q ++d +++++++ ++++++    +++++    aG gpa +          l+
  KIR60732.1  21 LAQLAH------------RrrtlpelaeletLARELSALEDERVRAQVAVDDLDRDIARIEKDVEQVRARKSKDEARLAAGSGPARELealqhELVSLN 107
                 333333............133333333444489999999*****9999999999999999999998888888555445555555444344444444444 PP

     DUF4407 194 aaqaelaelkakld...................atarlaalraelaeleaerakeraasqaaa 237
                 ++q +l++++ +l                    a++r+aa++++++++ a++ake++ +++++
  KIR60732.1 108 RRQSDLEDAELELMeqretaqgvldgierraadARERRAAAERRRDDALADIAKEEEFKRQSR 170
                 444444444444112222222444444444445555555555555555555555555444444 PP

>> ISG65-75  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2     0.018        29      64     143 ..      15      90 ..       7      95 .. 0.54
   2 ?    8.8   2.0   0.00051      0.83      52     136 ..      54     144 ..      50     155 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.018
    ISG65-75  64 ayienakekvdyyvekleslleeakekgtltesdaeklkkaceeAkaknkkarekakkalekaekaskkakeaakkAlGe 143
                 + i+++++++ +++  l++l e +    +l++ + e+++   + A ++ + + ++ +k  ++ +  ++k+k+ a+ A+G+
  KIR60732.1  15 QAIDTTLAQLAHRRRTLPELAELETLARELSALEDERVRA--QVAVDDLDRDIARIEK--DVEQVRARKSKDEARLAAGS 90 
                 5677777777777777777777765555555555444422..2222222222222222..22233456666666666665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00051
    ISG65-75  52 adyllketkdklayienakekvdyyvekleslleeakekgtltesdaekl......kkaceeAkaknkkarekakkalekaekaskkakea 136
                 a+  +++ ++++a ie+++e+v+++++k e++l+ + + +   e+ + +l      ++ +e+A+ +  ++re+a+ +l+ +e+ + +a e 
  KIR60732.1  54 AQVAVDDLDRDIARIEKDVEQVRARKSKDEARLAAGSGPARELEALQHELvslnrrQSDLEDAELELMEQRETAQGVLDGIERRAADARER 144
                 5567889999***********************99999887777777777799999999************************99999875 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.5    0.0027       4.4       2      44 ..      41      83 ..      33      89 .. 0.78
   2 ?    6.9   3.7    0.0039       6.3       1      63 [.      99     161 ..      99     171 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0027
        BRE1  2 qkELvklekafeelseqlskkvkeltileekklrleaekakad 44
                  EL  le ++  ++ +++++  ++++ e+ + ++ a k+k +
  KIR60732.1 41 ARELSALEDERVRAQVAVDDLDRDIARIEKDVEQVRARKSKDE 83
                5688888888888888888888888888888888888888876 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0039
        BRE1   1 lqkELvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkk 63 
                 lq+ELv+l++   +l+++  ++ ++ +  +  +  +e   a a++   aa+r +d+  +++ k
  KIR60732.1  99 LQHELVSLNRRQSDLEDAELELMEQRETAQGVLDGIERRAADARERRAAAERRRDDALADIAK 161
                 89******************************************************9999876 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2  18.8   0.00081       1.3      25     148 ..      38     161 ..      20     184 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00081
       ATG16  25 nrLldrtsaleaenaklekaaasaks..sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklked 121
                   L+   sale+e+ +++ a  +          +++ e+ + ++++++++ a  + ++ +l +l++el  l +++++l++  lel+e+ ++ +  l   
  KIR60732.1  38 ETLARELSALEDERVRAQVAVDDLDRdiA--RIEKDVEQVRARKSKDEARLAAGSGPARELEALQHELVSLNRRQSDLEDAELELMEQRETAQGVLDGI 134
                 45889999999999999999888888542..33344444444444568999************************************************ PP

       ATG16 122 eerlaeleaeraaletklkdreeelre 148
                 e+r a+++++raa e++++d  + ++ 
  KIR60732.1 135 ERRAADARERRAAAERRRDDALADIAK 161
                 *****************9997666654 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.5    0.0089        15       9      43 ..      40      74 ..      13      88 .. 0.66
   2 ?    6.4   1.2    0.0063        10      10      44 ..      93     132 ..      91     171 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0089
       Spc24  9 iakelsdleselesleselaelkeeleeleeesee 43
                +a els le+e  + +   ++l + ++ +e+  e+
  KIR60732.1 40 LARELSALEDERVRAQVAVDDLDRDIARIEKDVEQ 74
                55666666666666666666666666666554444 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0063
       Spc24  10 akelsdleselesleselaelkeeleeleeesee.....k 44 
                 a el+ l+ el sl+ ++++l++   el e++e      +
  KIR60732.1  93 ARELEALQHELVSLNRRQSDLEDAELELMEQRETaqgvlD 132
                 6788999999999999999999999999988887444441 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.8   0.00066       1.1     171     250 ..       6      86 ..       1      91 [. 0.70
   2 ?    2.9   6.1     0.025        41     178     253 ..      98     162 ..      90     177 .. 0.39

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00066
        Spc7 171 eleeekaeleeeleklqeaaeelesid.keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeei 250
                 +++++  +l++  ++l + a+   ++   +eLe+l +el++l+ e  + +  +++l ++++++e+++e+++++ks+ e+++
  KIR60732.1   6 KVQRRLLDLQAIDTTLAQLAHRRRTLPeLAELETLARELSALEDERVRAQVAVDDLDRDIARIEKDVEQVRARKSKDEARL 86 
                 555555555555555555444444444478899999999999999998999999999999999999999998888766655 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.025
        Spc7 178 eleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaea 253
                 +l++el +l+++        + +Le +  el e+ ++ +     l+  +++ ++ +e+ ++++ +++++ ++ia++
  KIR60732.1  98 ALQHELVSLNRR--------QSDLEDAELELMEQRETAQ---GVLDGIERRAADARERRAAAERRRDDALADIAKE 162
                 222222222222........2333333333333333222...3333333333333333333344444444444444 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.7     0.042        68       6      26 ..      33      53 ..      28      62 .. 0.78
   2 ?    9.9   3.4   0.00053      0.87       8      63 ..      63     116 ..      55     125 .. 0.74
   3 ?   -0.0   5.0      0.66   1.1e+03       8      30 ..      94     116 ..      93     168 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.042
  ABC_tran_CTD  6 eqreleeleaeIeaLEeeiae 26
                  e  ele+l +e+ aLE e   
    KIR60732.1 33 ELAELETLARELSALEDERVR 53
                  567999999999999988655 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00053
  ABC_tran_CTD   8 releeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeelyer 63 
                   r ++++e++ e+  +++++ ea+la+ +      +l +l+ el  l+     l++ 
    KIR60732.1  63 RDIARIEKDVEQVRARKSKDEARLAAGSG--PARELEALQHELVSLNRRQSDLEDA 116
                   77889********************9873..3466777777765555554444443 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.66
  ABC_tran_CTD   8 releeleaeIeaLEeeiaeleae 30 
                   rele+l  e+ +L  ++++le++
    KIR60732.1  94 RELEALQHELVSLNRRQSDLEDA 116
                   78888888888888888888872 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1350  (0.075297); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 1750.19
//
Query:       KIR60733.1  [L=409]
Description: acid phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-55  186.2   0.6      5e-55  186.2   0.6    2.2  3  His_Phos_1  Histidine phosphatase superfamily (branch 1)
      1e-27   96.4   0.1      2e-27   95.4   0.1    1.5  1  RVT_3       Reverse transcriptase-like
    3.7e-08   33.7   0.0    6.5e-08   32.9   0.0    1.4  1  RNase_H     RNase H
  ------ inclusion threshold ------
      0.024   14.4   0.3       0.05   13.4   0.3    1.7  1  RecC_C      RecC C-terminal domain


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.4      0.89     4e+03      31      47 ..     100     116 ..      99     132 .. 0.86
   2 ?   -2.8   1.5      0.92   4.1e+03      22      60 ..     165     203 ..     159     205 .. 0.82
   3 !  186.2   0.6   1.1e-58     5e-55       1     194 []     206     403 ..     206     403 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.89
                 HHHHHHHHHHTTS---E CS
  His_Phos_1  31 eqAealaerlagepida 47 
                 +qA+al  r+a+++++ 
  KIR60733.1 100 AQAAALVGRFAAVRFQW 116
                 79999999999999875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.92
                 ---B-HHHHHHHHHHHHHHTTS---EEEE-SSHHHHHHH CS
  His_Phos_1  22 dvpLteeGreqAealaerlagepidaiysSplkRarqTa 60 
                 d+p  ++ re A+++a r ag +++++ +S   R  +Ta
  KIR60733.1 165 DSPARALAREAAARAATRRAGTDPATAPASWEPRPSDTA 203
                 777778889999999999999999999999888888888 PP

  == domain 3  score: 186.2 bits;  conditional E-value: 1.1e-58
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EE..EE-SSHHHHHHHHHHHHCTT..--EEE-GGGS----GGGTT-B.HHHHH CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidai..ysSplkRarqTaeliaealg..lpveldegLrEidfGdweglttaeiae 95 
                 l+LvRHGete  +++r++gr+dvpL+++Gr+q++a+a+r+a+  ++++  +sSpl+R+  Ta++ia+al   +p+++d++L E+dfG+weg+t+ae+++
  KIR60733.1 206 LILVRHGETEFTEQRRYSGRGDVPLSARGRAQVRATAARVAALAPAVAavVSSPLSRCTATARAIAGALRgtVPLRTDDDLIECDFGAWEGRTFAEVRA 304
                 79****************************************66665556************************************************* PP

                 H..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEE.E-SS-EEEEEEEE CS
  His_Phos_1  96 eypeeleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglpleelrrleldnaslsvle.fdeggwrlvrlnd 193
                  ++ el+awl+++  v+pp+gEs+ +vaaRv++a ++l+++++getv+vVsH  +i+++l+++l  + ++l+rl ld a++svl+ + +gg +++++nd
  KIR60733.1 305 GWQGELDAWLASTR-VAPPDGESFTEVAARVTRATDALVEAYPGETVVVVSHVSPIKLVLREALAADDAFLHRLYLDAAGISVLDrWSDGGVAVRSVND 402
                 ***********998.99*******************************************************************626777788888887 PP

                 - CS
  His_Phos_1 194 t 194
                 t
  KIR60733.1 403 T 403
                 5 PP

>> RVT_3  Reverse transcriptase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.1   4.5e-31     2e-27       2     124 .]      10     132 ..       9     132 .. 0.95

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 4.5e-31
       RVT_3   2 fdgafkkksgaggagvvirds.nGevllagaeklqgkasveeAElqALlrGLqlalklgirrlvvegDsktvvqllngrekvksselanlldeirkllk 99 
                  dg  + + g +g g+v+rd+  Gevl+  +e   g+a++ +AE+++L+ GL++a++lg  ++    Dsk vv++++gr+++k++ l+ l  ++ +l+ 
  KIR60733.1  10 ADGGSRGNPGPAGYGAVVRDAaSGEVLAERSEA-IGTATNNVAEYRGLIAGLEAAAELGAAEVDARMDSKLVVEQMCGRWQIKHPGLRPLAAQAAALVG 107
                 5888899*************9778888888877.8889************************************************************* PP

       RVT_3 100 sfesvsvehipReqNrvAdalAkra 124
                 +f  v++++ipRe Nr AdalA+ a
  KIR60733.1 108 RFAAVRFQWIPRERNRHADALANAA 132
                 **********************976 PP

>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   1.4e-11   6.5e-08       3     141 ..       5     132 ..       3     138 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.4e-11
                 SEEEEEEEEEECTTTCEEEEEEECTT...EEEEEEEC..CCCHHHHHHHHHHHHHHHTT.SC..SEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSS CS
     RNase_H   3 avvvYtDGsclgnpgeggagavlykeg.arnisaple..eaqtnnraELsAvieaLkalksd..ekvniytDSkYvvkgitqwvhrwkknawkttseqk 96 
                 avvv +DG ++gnpg++g+gav+      + ++++ e  ++ tnn aE + +i+ L+a+ +    +v  + DSk vv+   q+  rw+ ++       +
  KIR60733.1   5 AVVVEADGGSRGNPGPAGYGAVVRDAAsGEVLAERSEaiGTATNNVAEYRGLIAGLEAAAELgaAEVDARMDSKLVVE---QMCGRWQIKHP----GLR 96 
                 788999***************9965543333333333457*****************54333578999*********9...77889966554....234 PP

                 BHTTHHHHHHHHHCHCSSEEEEEE-SCCSSSTHHHHHHHHHHHHH CS
     RNase_H  97 pvknkdlaellkelakkkkvqlkwvkgHaGvpkgNemaDrlAkea 141
                 p+ + + a+l+    +  +v+++w++      + N+ aD lA++a
  KIR60733.1  97 PLAA-QAAALV---GRFAAVRFQWIP----R-ERNRHADALANAA 132
                 6666.666666...566779999998....3.5788888888776 PP

>> RecC_C  RecC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3   1.1e-05      0.05      63     143 ..     215     295 ..     165     345 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.1e-05
      RecC_C  63 e.ellarlrargeLPpgafGelaleelleqvealaealrallgeepleslevdldlggtgLtgtldglrergllrwrpsklk 143
                 e + ++r+  rg +P+ a G+++ + ++++v+ala a++a ++++ ++  +    ++g  L+gt++  +++ l+++ +++  
  KIR60733.1 215 EfTEQRRYSGRGDVPLSARGRAQVRATAARVAALAPAVAAVVSSPLSRCTATARAIAG-ALRGTVPLRTDDDLIECDFGAWE 295
                 3446899*******************************99999985554455555555.69999999998888888777663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2610.84
//
Query:       KIR60734.1  [L=80]
Description: hypothetical protein TK50_22985 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-12   47.8   2.3    1.2e-12   47.6   2.3    1.1  1  DUF3311   Protein of unknown function (DUF3311)
  ------ inclusion threshold ------
      0.016   13.8   0.2      0.016   13.8   0.2    1.0  1  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> DUF3311  Protein of unknown function (DUF3311)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   2.3   1.3e-16   1.2e-12       1      56 [.      24      78 ..      24      80 .] 0.96

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 1.3e-16
     DUF3311  1 vlllvpvlvalllvpfynrvdpvllGlPffywwqllwvllasvvtwlayrlakred 56
                +ll vp + + l+++f n + p+++G+P fyw ql+ +ll+ ++t+l+y+l+k+++
  KIR60734.1 24 WLLFVP-IAVPLIPVFFNADSPRVFGFPRFYWLQLAYILLGVATTTLVYQLTKKRG 78
                99****.********************************************99865 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   1.8e-06     0.016      63     114 ..      15      69 ..      10      80 .] 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-06
       MFS_2  63 rwGrrrPwlllsaiilavsiillftppelsqs...akfiwllvtyillrilytlf 114
                 r   r Pw  l  +++av +i +f++ +  ++   + f wl ++yill +++t++
  KIR60734.1  15 RAKDRSPWNWLLFVPIAVPLIPVFFNADSPRVfgfPRFYWLQLAYILLGVATTTL 69 
                 55667799888999999999*99*999977779999***********99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 628.35
//
Query:       KIR60735.1  [L=552]
Description: sodium:solute symporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-20   71.3  20.6    1.1e-19   70.6  20.6    1.3  1  SSF       Sodium:solute symporter family


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6  20.6   6.4e-24   1.1e-19       3     404 ..      43     447 ..      41     449 .. 0.79

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 6.4e-24
         SSF   3 lagrsltgfvlglslaasnisaasfvGlaGavaasGlavvllelgalllvlllllllaerlr....nagalTlpdylskRfkgkrilvylsalslllvi 97 
                 l+grs +g+ +   ++++   a  fv ++++v+  G  ++++++  +++++ +++l+  rl     + g +T +d+++ Rf++   l ++ a++ +++ 
  KIR60735.1  43 LGGRSFGGWITWFLVGGDLYTAYTFVAVPALVFGAGA-MGFFAVPYTIVIYPMVFLVLCRLWsvshRHGFVTPADFVRSRFDSPV-LALVVAITGIVAT 139
                 89*******************************9995.5566666666666666666666655788***************9998.7777777789999 PP

         SSF  98 tlklsvdlvggakliela.....lGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivllevGgleslveklkeaapkvvdllt 191
                 + +++ +lvg  + ++++       l  ++ +++  a++a Yt   Gl+A  +   ++ +l+ v  l+ ++    ++Gg  s+++ + +    ++++ +
  KIR60735.1 140 MPYIALQLVGIEAVLKTMgvtgeSALARHLPIIIAFAILAAYTYQSGLRAPALIAFVKDTLIYVVILVAVLWLPQKLGGWGSIFDAAEAKFQATAQNPN 238
                 **********999998742222234556677899999************************99999999999999****99999876544442333333 PP

         SSF 192 pdslkllrdpltalslwlglvlGvagl....philvRflaakdakailkgvlkltivlilvligmisiilfaiklagavp.kavgtevgvsniaypeLv 285
                  d+  +l+++ ++l   + l +G a +    ph +  +la  +   i k  +++++  +lvl ++  +++ a   ag++p   +++    +n ++p L 
  KIR60735.1 239 -DG--ILLNANNQLQY-VTLAFGSALAlflyPHSITGVLASRNRDVI-KRNMSALPAYSLVLGLIALLGYMA-IAAGVKPlPGATPGSADANTVVPVLF 331
                 .33..34444433333.55566655555555********98876655.556789999999987744455544.56899999889999999********* PP

         SSF 286 vkllpnllaGlllavm.lAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeqkgvlklvelafaglasavla 383
                  + +p+++aG+  a++ + a++   + + ++a+ +ft+ +Yk+ +++  a+  ++++vs+i++lvv + a++ +v    +      +l+ +++    l+
  KIR60735.1 332 DQQFPDWFAGVAYAAIgIGALV-PAAIMSIAAANLFTRNIYKEYLKRD-ASPAQEANVSKITSLVVKVGAVACIVFLDPQ-FSIDLQLIGGVIILQTLP 427
                 ***********99887355544.44555578999*************9.999999**********998888888877777.556678999999999999 PP

         SSF 384 villalfwkrvneqGAlagli 404
                  + l+l+  r   +GAl++++
  KIR60735.1 428 AVALGLYT-RWFYRGALIAGW 447
                 99999996.777889999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4022.88
//
Query:       KIR60736.1  [L=160]
Description: MarR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-14   52.8   0.0    6.6e-14   51.6   0.0    1.7  1  MarR            MarR family
    5.9e-12   45.3   1.9      7e-12   45.1   0.7    1.9  2  MarR_2          MarR family
    2.5e-10   40.7   0.0    1.9e-09   37.9   0.0    2.1  2  HTH_27          Winged helix DNA-binding domain
    6.6e-07   28.8   0.0    9.9e-07   28.2   0.0    1.3  1  HTH_24          Winged helix-turn-helix DNA-binding
    5.5e-06   26.3   0.3    5.5e-06   26.3   0.3    1.8  2  HTH_20          Helix-turn-helix domain
    6.8e-05   22.6   0.9    0.00014   21.6   0.2    2.0  2  HTH_IclR        IclR helix-turn-helix domain
    9.2e-05   22.6   0.0    0.00017   21.7   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
    0.00025   21.0   2.3     0.0046   16.9   0.0    2.5  3  HTH_29          Winged helix-turn helix
    0.00049   20.0   0.3     0.0021   18.0   0.1    2.1  2  HTH_Crp_2       Crp-like helix-turn-helix domain
    0.00099   18.9   0.6      0.004   16.9   0.2    2.3  2  HTH_AsnC-type   AsnC-type helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.018   14.9   0.0    1.3  1  HTH_5           Bacterial regulatory protein, arsR family
      0.037   13.9   0.0      0.087   12.7   0.0    1.7  1  TrmB            Sugar-specific transcriptional regulator TrmB
       0.06   13.5   0.0      0.098   12.8   0.0    1.3  1  DUF2250         Uncharacterized protein conserved in archaea 
        0.1   12.4   0.0       0.19   11.6   0.0    1.4  1  HxlR            HxlR-like helix-turn-helix


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   5.2e-17   6.6e-14       3      57 ..      47     101 ..      45     103 .. 0.95

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 5.2e-17
                 HHHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTT CS
        MarR   3 ltqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRskspeDrR 57 
                 ++ +viLr l++ gp++vs La +l+++ stvtr++ ++ ++Gli R ++p+D R
  KIR60736.1  47 RAAYVILRHLDSAGPQNVSALAARLNLDGSTVTRQVSAMQRDGLIARAPDPSDGR 101
                 5689**************************************************9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.7   5.5e-15     7e-12       4      62 .]      46     102 ..      21     102 .. 0.95
   2 ?   -3.4   0.0       7.3   9.4e+03       6      17 ..     136     147 ..     135     150 .. 0.55

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 5.5e-15
                 -HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2   4 tpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62 
                 ++a + +L +L  +++   +v++la+rl+l+ s+v+r +  +++ GL+ r p+p D+R+
  KIR60736.1  46 DRAAYVILRHLDSAGP--QNVSALAARLNLDGSTVTRQVSAMQRDGLIARAPDPSDGRG 102
                 567778999**99999..8***************************************7 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.3
                 HHHHHHHHHHCT CS
      MarR_2   6 aqarvLaaLgrr 17 
                 a+++ La L +r
  KIR60736.1 136 ADRDTLADLLHR 147
                 555555555544 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   1.5e-12   1.9e-09       4      68 .]      48     111 ..      45     111 .. 0.96
   2 ?    0.4   0.0      0.75   9.6e+02      15      29 ..     135     149 ..     124     154 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 1.5e-12
      HTH_27   4 qqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                    ++L+++    +++  ++l+ rln++ s++   ++++ + GL+ r +d+ d+r + v+ T++G
  KIR60736.1  48 AAYVILRHLD-SAGPQNVSALAARLNLDGSTVTRQVSAMQRDGLIARAPDPSDGRGTVVSPTPAG 111
                 56799*****.****************************************************99 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.75
      HTH_27  15 rrrrkkladlcgrln 29 
                 + +r++ladl  rln
  KIR60736.1 135 PADRDTLADLLHRLN 149
                 679999***999988 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   7.7e-10   9.9e-07       6      47 ..      50      91 ..      45      92 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 7.7e-10
      HTH_24  6 rkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                + IL+ L   +  + + LA rl+l  stv+r++  ++++GlI
  KIR60736.1 50 YVILRHLDSAGPQNVSALAARLNLDGSTVTRQVSAMQRDGLI 91
                66***************************************9 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.3   4.3e-09   5.5e-06       9      56 ..      46      93 ..      31      97 .. 0.92
   2 ?   -3.0   0.1       6.2     8e+03      44      44 ..     147     147 ..     136     157 .. 0.52

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 4.3e-09
                -HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20  9 hPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvev 56
                ++  + ilr+L +a+++ +s+la+rl l+ +t+ +++ ++++ gL+ +
  KIR60736.1 46 DRAAYVILRHLDSAGPQNVSALAARLNLDGSTVTRQVSAMQRDGLIAR 93
                667788****************************************87 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.2
                 H CS
      HTH_20  44 H 44 
                 +
  KIR60736.1 147 R 147
                 2 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.2   1.1e-07   0.00014       7      50 ..      51      93 ..      44      95 .. 0.89
   2 ?   -3.5   0.0       7.6   9.7e+03      22      27 ..     142     147 ..     135     152 .. 0.55

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.1e-07
                HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                 iL++l +a++  ++s lA+r+ l  Stv R ++ +++ G++ +
  KIR60736.1 51 VILRHLDSAGPQ-NVSALAARLNLDGSTVTRQVSAMQRDGLIAR 93
                48*********7.****************************987 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 7.6
                 HHHHHH CS
    HTH_IclR  22 selArr 27 
                 ++l +r
  KIR60736.1 142 ADLLHR 147
                 444333 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.3e-07   0.00017      13      56 ..      52      95 ..      50      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.3e-07
                    HHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
  Fe_dep_repress 13 IYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyveyek 56
                    I++  ++ ++  ++ la rLn  +s+V+  ++ +++dG++  ++
      KIR60736.1 52 ILRHLDSAGPQNVSALAARLNLDGSTVTRQVSAMQRDGLIARAP 95
                    788889999999***************************98766 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.5   7.1e+03      18      28 ..      23      33 ..      21      38 .. 0.52
   2 !   16.9   0.0   3.6e-06    0.0046       4      53 ..      52     102 ..      50     108 .. 0.81
   3 ?    3.4   0.3     0.059        76       1      38 [.     114     150 ..     114     159 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.5
      HTH_29 18 iAkllglsrrt 28
                +A l++l + t
  KIR60736.1 23 VALLMRLGEAT 33
                44445444444 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 3.6e-06
      HTH_29   4 allllaeGvs.tvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrp 53 
                 +l++l+ +++ +vs +A++l+l+ +tv r + +++ +Gl a  + ++ gr+
  KIR60736.1  52 ILRHLDSAGPqNVSALAARLNLDGSTVTRQVSAMQRDGLIARAPDPSDGRG 102
                 7899999999****************************6553334666666 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.059
      HTH_29   1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfee 38 
                 R++a+++++  ++    +A +   +r+t  + l+r +e
  KIR60736.1 114 RMAAVRAARTRLY-GDILADWAPADRDTLADLLHRLNE 150
                 7888888888888.9999999999***********997 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.6e-06    0.0021      25      66 ..      65     113 ..      24     115 .. 0.78
   2 ?   -0.5   0.0      0.99   1.3e+03      27      47 ..     130     150 ..     124     157 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.6e-06
                 HHHHHHTTSSHHHHHHHHHHHHHTTSEEE......TEE.EEES-HHHHH CS
   HTH_Crp_2  25 eelAsmlGltretvsrilseLkreglisr......grr.irildleaLr 66 
                   lA++l+l  +tv+r  s+++r+gli r      gr+ ++ + +++L+
  KIR60736.1  65 SALAARLNLDGSTVTRQVSAMQRDGLIARapdpsdGRGtVVSPTPAGLQ 113
                 579************************9423343333356666666665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.99
                 HHHHTTSSHHHHHHHHHHHHH CS
   HTH_Crp_2  27 lAsmlGltretvsrilseLkr 47 
                 lA+   + r t+  +l++L +
  KIR60736.1 130 LADWAPADRDTLADLLHRLNE 150
                 566666666666666666654 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.5   1.9e+03      25      37 ..      35      47 ..      29      50 .. 0.85
   2 !   16.9   0.2   3.1e-06     0.004       6      41 ..      50      85 ..      45      86 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.5
  HTH_AsnC-type 25 ervGlSestvlrR 37
                   +++G +e +vl R
     KIR60736.1 35 RATGTAEHRVLDR 47
                   5789999999998 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 3.1e-06
  HTH_AsnC-type  6 rkILeaLqedaRisyaeLAervGlSestvlrRvrrL 41
                     IL++L   +   +++LA+r++l+ stv r v ++
     KIR60736.1 50 YVILRHLDSAGPQNVSALAARLNLDGSTVTRQVSAM 85
                   57****************************988877 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.4e-05     0.018       7      45 ..      52      91 ..      51      93 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.4e-05
                HHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  7 ILklLae.gelcvcelaeelglsqstvShHLkkLreaGLV 45
                IL+ L + g++ v+ la+ l+l  stv ++ +++   GL+
  KIR60736.1 52 ILRHLDSaGPQNVSALAARLNLDGSTVTRQVSAMQRDGLI 91
                77778888******************************98 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.8e-05     0.087      14      57 ..      50      96 ..      43     110 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.8e-05
                CHHHH...HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB 14 YlaLl...klgpatadeiaeelgvprskvYevLrsLedkGlVerekg 57
                Y+ L    + gp +++ +a +l+++ s+v + ++ + + Gl+ r + 
  KIR60736.1 50 YVILRhldSAGPQNVSALAARLNLDGSTVTRQVSAMQRDGLIARAPD 96
                55554445889*******************************99765 PP

>> DUF2250  Uncharacterized protein conserved in archaea (DUF2250)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.7e-05     0.098       7      55 ..      46      94 ..      40      98 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.7e-05
     DUF2250  7 delalkvlkhlkkanvdYaksiakeleipleevrellkkLeelGLlerv 55
                d+ a+ +l+hl+ a++     +a +l+++ + v++ + ++++ GL+ r 
  KIR60736.1 46 DRAAYVILRHLDSAGPQNVSALAARLNLDGSTVTRQVSAMQRDGLIARA 94
                667899****************************************985 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.19       6      71 ..      48     113 ..      44     127 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
                 THHHHHHHHTT.S-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGG CS
        HxlR   6 Wkllilvellk.gkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrs 71 
                    +il++l + g++  s l+++l ++  ++ +++  ++++dgli r + p+ +     s t++G +
  KIR60736.1  48 AAYVILRHLDSaGPQNVSALAARL-NLDGSTVTRQVSAMQRDGLIARAPDPSDGRGTVVSPTPAGLQ 113
                 5679*****988************.***********************9999988877777777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1148.84
//
Query:       KIR60737.1  [L=410]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-31  109.3  52.1    1.9e-31  109.3  52.1    2.0  2  MFS_1     Major Facilitator Superfamily
     0.0051   17.1   0.8      0.021   15.1   0.0    2.4  2  DUF1774   Fungal protein of unknown function (DUF1774)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3  52.1   2.1e-35   1.9e-31       2     349 ..      16     338 ..      15     342 .. 0.83
   2 !    3.9   1.3    0.0024        21      45      80 ..     338     373 ..     333     392 .. 0.64

  Alignments for each domain:
  == domain 1  score: 109.3 bits;  conditional E-value: 2.1e-35
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGlg 98 
                  l+afl++++++++ p+lp a++e+ g+++ ++ ll+t+y +++a++++p+   s rfG ++vl++g+ + +l+ ++++ f s+    l vlr + Glg
  KIR60737.1  16 TLVAFLAIAGIAVVDPILP-AIGEAIGVTAWQVELLFTAYIAVMALGMIPATLASGRFGFKPVLITGVSVVGLA-AIGAsF-SNDIvQLSVLRGVWGLG 111
                 5899***************.******************************************************.666659.77777************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplv 197
                  +++f++++++++ ++++  r  ++gl+ ++ +lG+++gpllggll   ++Wr++f++++i+++la  l+++  + ++p+++ ++ +            
  KIR60737.1 112 NAMFFATAMVVLVNLAND--REWVVGLFETALGLGFAVGPLLGGLLG-EVSWRLPFFVCGIFMVLA--LAVASRRLREPANPQPRVRLG---------- 195
                 ****************96..999************************.899***************..544666666666666655444.......... PP

       MFS_1 198 pawkallkdpvlwillialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalgla 292
                  ++   +++ ++ ++ ++++++f +f+ +l ++pl+    lgl+    gl  +g   +l+ ++g+ +  ++ rl++r+g+  +  +a+++ll++ +++a
  KIR60737.1 196 AIFATYRRPAFVALCAVTAAYNF-VFFVVLGYTPLF----LGLDviplGLAFTG--WGLGLAAGILV--VGHRLAHRIGAVQTVGVAVAGLLACMVLFA 285
                 22344555554445666666665.888899999998....88885555666666..66666666555..9999******97777777777777777777 PP

       MFS_1 293 llavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslgg 349
                     t   +++l+vlv++G+++g++++ l+ la  l     +  a+g+fn+++  ++
  KIR60737.1 286 TSTGT---AMSLVVLVVAGLFMGLANANLTDLALGLGA-ADRRVATGAFNLVRWGAA 338
                 77777...99999************9999999999875.777789999998876555 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0024
       MFS_1  45 aavaslplGrlsdrfGrrrvlllglllfalg.lllll 80 
                 aa a ++ G l++  G+   +++gl ++a+g l++l+
  KIR60737.1 338 AAPAPIISGKLAEH-GPALPFWVGLGVLAAGaLVYLA 373
                 45555666777774.7888888888888888333333 PP

>> DUF1774  Fungal protein of unknown function (DUF1774)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.4e-06     0.021       4      78 ..     111     186 ..     110     194 .. 0.90
   2 ?   -2.0   0.4      0.53   4.8e+03      57      57 ..     273     273 ..     217     313 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.4e-06
     DUF1774   4 aNvfiwailvvglffivaykDytlgfslslLslalgvgQlltkvi.alQwifafviaavlfvlslvvavakllgre 78 
                 +N + +a  +v l+ ++  + +++g+  ++L l+ +vg ll  ++ ++ w   f + ++++vl+l+va ++l++ +
  KIR60737.1 111 GNAMFFATAMVVLVNLANDREWVVGLFETALGLGFAVGPLLGGLLgEVSWRLPFFVCGIFMVLALAVASRRLREPA 186
                 688999999999999*99***********************998747*********************99887665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.53
     DUF1774  57 v 57 
                 +
  KIR60737.1 273 A 273
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 3296.01
//
Query:       KIR60738.1  [L=253]
Description: permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-36  125.3  41.9    3.4e-36  125.1  41.9    1.0  1  TauE      Sulfite exporter TauE/SafE


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1  41.9   1.9e-40   3.4e-36       2     236 .]      10     247 ..       9     247 .. 0.90

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 1.9e-40
        TauE   2 llagllaGfvagllGiGggliavPlLll.llppavavatsllavvatslsgalahrrrgnvdwrlllllllgsliGallGallllllpsellkllfgvl 99 
                 + agl+aG+v++++G Gg+li++P++++ +lpp+ a++++ +av+++++++++  r     + r+l+ ll+ +++G+++G llll +p+++++l++++l
  KIR60738.1  10 VTAGLAAGTVNAVAG-GGSLITFPAMIAaGLPPVPANVSNSVAVFPGYVASVAGSRTD-LPRGRALWALLPTTVVGTIVGCLLLLGTPARAFELVVPFL 106
                 679************.************6699999**************988888775.46779*********************************** PP

        TauE 100 llllallmllrkkr.....srakgrerrptaillvligglvGllsGllGiGgGfllvpllllllglplkkavatslllilvislagalgyalagavdwp 193
                 +l + + ++++        ++a+  +rr+t   + ++ +++++++G++G+  G++lv+ l l+l  +l ++ a+++ll+++++l++++++al+g v+w 
  KIR60738.1 107 VLGATAVLAFQDPLrrlvgHPAELGPRRRTVT-VQAMVAVGAVYGGYFGAALGVMLVAGLALVLDATLARVSAVKNLLSATVGLTTLVVFALFGPVNWA 204
                 ********994444456664444344444444.3444478*********************************************************** PP

        TauE 194 llllllpgallGallGarlarrlsertlrrlfallllvlgvkl 236
                 ++++++p++l+G+++Garl+rrl++ +l+ l++++ +++g++l
  KIR60738.1 205 AVAVVAPATLVGGYVGARLVRRLPPVVLKTLIVAFGTAIGLYL 247
                 *****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1747.71
//
Query:       KIR60739.1  [L=70]
Description: regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00045   20.0   0.3     0.0007   19.4   0.3    1.4  1  Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
  ------ inclusion threshold ------
      0.068   13.4   0.2       0.29   11.3   0.1    2.0  1  HTH_17      Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.3   7.8e-08    0.0007      14      51 .]      25      62 ..      12      62 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.8e-08
  Phage_AlpA 14 glsrstiYrlikdgeFPkkvkLGvrsVgWlesEIdeWi 51
                g sr  +Y++ ++++FP +v   +   +Wl++++++Wi
  KIR60739.1 25 GVSRQRVYQITSRRDFPEPVATLQMGNVWLAEDVEAWI 62
                89******************98888899*********8 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   3.3e-05      0.29       9      50 ..      21      65 ..      13      66 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.3e-05
      HTH_17  9 elLg.vsrstvyrlirrgelpaa....kiGrrwriprsdleewlekr 50
                 +Lg vsr+ vy+  +r ++p                +d+e+w++++
  KIR60739.1 21 TMLGgVSRQRVYQITSRRDFPEPvatlQ--MGNVWLAEDVEAWIAAK 65
                566659**************76565442..23788899999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 564.22
//
Query:       KIR60740.1  [L=76]
Description: hypothetical protein TK50_23020 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.019   15.7   0.1       0.03   15.1   0.1    1.3  1  Herpes_US12  Herpesvirus US12 family


Domain annotation for each model (and alignments):
>> Herpes_US12  Herpesvirus US12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.1   1.7e-06      0.03      10      45 ..       6      40 ..       3      53 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.7e-06
                 HHHHT-SSS---HHHHHHHHHHT--XXXXXXXXXXX CS
  Herpes_US12 10 tfldssrvthrtyadvrdeinkreredreaartavt 45
                 + lds rvt r    + +e  k   e reaar av 
   KIR60740.1  6 VHLDSDRVTARRILQLHQE-GKTHHESREAARDAVW 40
                 579*************999.68899*********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 562.20
//
Query:       KIR60741.1  [L=238]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-13   49.4   0.0    6.4e-13   48.7   0.0    1.2  1  TetR_C_1  Tetracyclin repressor-like, C-terminal domain
    2.2e-09   36.9   1.5    1.8e-08   34.1   0.0    2.6  3  TetR_N    Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.068   12.8   0.0       0.14   11.8   0.0    1.5  1  HTH_24    Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> TetR_C_1  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   1.1e-16   6.4e-13       2     138 ..      95     228 ..      94     231 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 1.1e-16
                 -STTS-HHHHHHHHHHHHHHHHHTSTTHHHHHHT-SS--HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHSTT--STT-HHHHH CS
    TetR_C_1   2 PdegedWrerlrelarslrrallrhrdlarlfagtprlspnelrgmErlLrllrdaGlsdedavyalslisnFvvGavleeqsgledaeeraeqeavle 100
                 P+  +dWr++ r l r+ r+a+lrh++ a+ ++g+p+l+pn l+  E l + l ++G +    + a+++++n+v+Ga l e    + a  +a+ +a++ 
  KIR60741.1  95 PEVTDDWRQDARVLVRAWRAAMLRHPW-APGLIGRPMLGPNVLARTEFLQAALVRGGCGGLGLTVATRMLANYVIGASLTEATWRQHADPGARAAAREH 192
                 77789*********************9.6777999********************************************99997766677777777788 PP

                 HH--TTT-HHHHHHHH...HHT--.-HHHHHHHHHHHHH CS
    TetR_C_1 101 ealepgeypllaealelaeiltse.dsdaaFefGLelll 138
                  a+++ +yp l +  +     +s  d d  Fe+GL+ +l
  KIR60741.1 193 VAASADTYPTLHASGH---LDDSRwDDDLLFEEGLDGVL 228
                 888888*********9...44443267779*****9777 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0     3e-12   1.8e-08       1      45 [.      38      82 ..      38      84 .. 0.95
   2 ?    1.1   0.1     0.059   3.5e+02       2      27 ..     173     198 ..     172     201 .. 0.89
   3 ?   -2.1   0.1      0.57   3.4e+03       9      27 ..     219     235 ..     217     237 .. 0.53

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 3e-12
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLle 45
                I+ aA+ l+   G++++t+r++A+r+ v++ alY++ ++K++ l+
  KIR60741.1 38 IVGAAVTLLDADGIEGLTMRRLAQRLDVTATALYWHVKTKDDVLD 82
                678**************************************9986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.059
                 HHHHHHHHHHHHTTT--HHHHHHHHT CS
      TetR_N   2 ldaArelfaerGydattvreIAkrAG 27 
                  +a+++  a+ G +a+  + +A++A 
  KIR60741.1 173 TEATWRQHADPGARAAAREHVAASAD 198
                 6899************9999999986 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.57
                 HHHHHTTT--HHHHHHHHT CS
      TetR_N   9 faerGydattvreIAkrAG 27 
                 + e+G d++   + A+rAG
  KIR60741.1 219 LFEEGLDGV--LRAAARAG 235
                 556666644..33366666 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.3e-05      0.14      17      39 ..      53      75 ..      52      77 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.3e-05
      HTH_24 17 risqreLAerlglSpstvnrrlk 39
                ++++r LA+rl+++ +++ +++k
  KIR60741.1 53 GLTMRRLAQRLDVTATALYWHVK 75
                79********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1738.03
//
Query:       KIR60742.1  [L=226]
Description: haloacid dehalogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-16   58.6   0.0    1.1e-15   58.1   0.0    1.2  1  HAD_2           Haloacid dehalogenase-like hydrolase
    1.4e-10   41.8   0.3    2.6e-10   40.9   0.3    1.6  1  Hydrolase       haloacid dehalogenase-like hydrolase
    3.5e-09   36.6   0.6    3.5e-09   36.6   0.6    1.9  2  Hydrolase_like  HAD-hyrolase-like
    1.6e-07   31.9   0.6    2.4e-07   31.3   0.6    1.4  1  HAD             haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   2.5e-19   1.1e-15      85     177 ..     101     195 ..      74     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 2.5e-19
       HAD_2  85 kelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedv..ekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvia 177
                 ++++   ++ g ++++v+++s++ v+  l+++g++sy + +v+  +   e+ KPdp + ++al++l++++++++ vGDs tD+eaa++agi +i+
  KIR60742.1 101 RQVIVAAHRTGRRVAVVSNNSAACVRAYLSAHGLTSYVHPVVGRPEGapERMKPDPYPALAALRELDAEPADCVLVGDSATDVEAAHAAGIAAIG 195
                 5666677788999******************************876511566***************************************9997 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.3   5.9e-14   2.6e-10     103     210 .]      77     190 ..      14     190 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 5.9e-14
                 H...TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCES..STTTSHHHHHHHHHHHTSTGGGEEE CS
                 x...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 103 l...qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdiet..vakpspegkvaaireLqgkpeevam 195
                     +a  +a++t+a +  + p  ++++ + ++ g +v+++++++ + +++ ++  G   y++ v+++ + +    kp+p   +aa+reL ++p++++ 
  KIR60742.1  77 RlvdEALTRAEVTAARTAAPTPYGRQVIVAAHRTGRRVAVVSNNSAACVRAYLSAHGlTSYVHPVVGRPEGApeRMKPDPYPALAALRELDAEPADCVL 175
                 2444677789999999999**************************************7777766666666659************************** PP

                 EESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxx RF
   Hydrolase 196 VGDgvnDaaalaaAg 210
                 VGD+++D++a+ aAg
  KIR60742.1 176 VGDSATDVEAAHAAG 190
                 **************8 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1         1   4.5e+03      35      49 ..     104     118 ..     104     135 .. 0.79
   2 !   36.6   0.6   7.9e-13   3.5e-09       4      64 ..     153     212 ..     151     222 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1
                     HHHHHHCT-EEEEES CS
  Hydrolase_like  35 iagAnnaGwksvLVl 49 
                     i +A++ G + + V 
      KIR60742.1 104 IVAAHRTGRRVAVVS 118
                     678888888877775 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 7.9e-13
                     TTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHH CS
  Hydrolase_like   4 KPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehk 64 
                     KP p    +al++l+++p++++++GD+ atD+++A++aG+  + ++    ++++l+++ ++
      KIR60742.1 153 KPDPYPALAALRELDAEPADCVLVGDS-ATDVEAAHAAGIAAIGYANKPGKRARLAAADAT 212
                     99*************************.***************998866666666544444 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.6   5.5e-11   2.4e-07      61     187 ..      66     186 ..      15     187 .. 0.71

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 5.5e-11
         HAD  61 llagls.eelaaelerfv..aevirpk..lldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegk 154
                 + a l  +++++ +++++  aev + +  + +p  ++++ a+++ G rv+vvS++   +v++ l ++g    l +   +++ + g+  +eg p r   k
  KIR60742.1  66 FTATLGrPAVIRLVDEALtrAEVTAARtaAPTPYGRQVIVAAHRTGRRVAVVSNNSAACVRAYLSAHG----LTS---YVHPVVGR--PEGAPERM--K 153
                 4444444455555555555433333332246689999999999*************************....999...22244444..56666666..6 PP

         HAD 155 vaalrewlaaegegidleevvayGDspsDlpll 187
                 ++   + +a ++ +++++++v +GDs +D++++
  KIR60742.1 154 PDPYPALAALRELDAEPADCVLVGDSATDVEAA 186
                 655555668999******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.58
# Mc/sec: 1171.45
//
Query:       KIR60743.1  [L=177]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-06   27.9   1.3    3.2e-06   26.9   0.7    1.9  2  RHH_1            Ribbon-helix-helix protein, copG family
    1.6e-05   24.7   2.9    4.1e-05   23.4   0.4    2.3  2  RHH_5            CopG-like RHH_1 or ribbon-helix-helix domain
    3.1e-05   23.7   0.6    7.5e-05   22.5   0.6    1.6  1  HicB             HicB family
    7.4e-05   22.6   0.7    0.00018   21.4   0.7    1.6  1  DUF1778          Protein of unknown function (DUF1778)
    0.00018   21.3   0.1    0.00035   20.3   0.1    1.5  1  Arc              Arc-like DNA binding domain
  ------ inclusion threshold ------
      0.039   14.1   0.0      0.065   13.3   0.0    1.3  1  HicB_lk_antitox  HicB_like antitoxin of bacterial toxin-antit


Domain annotation for each model (and alignments):
>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.6   1.1e+04      17      25 ..      17      26 ..      13      26 .. 0.76
   2 !   26.9   0.7   1.1e-09   3.2e-06       1      35 [.     114     149 ..     114     150 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.6
                HHHHHT.SSH CS
       RHH_1 17 larrrg.rSr 25
                la+++g  Sr
  KIR60743.1 17 LAEAGGdESR 26
                8999987776 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 1.1e-09
                 EEEEEEEHHHHHHHHHHHHHHTSSHH.HHHHHHHHH CS
       RHH_1   1 rvsirldeellerLdelarrrgrSrS.elIReAlre 35 
                 r+++rl+e+l+++++e a+r+grS+  +l+R+A+++
  KIR60743.1 114 RINVRLPEQLKAAIEEAAAREGRSVNaWLVRAAAAA 149
                 89**********************954999999975 PP

>> RHH_5  CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.14   4.3e+02      12      28 ..      44      60 ..      43      60 .. 0.89
   2 !   23.4   0.4   1.4e-08   4.1e-05       3      27 ..     114     138 ..     113     147 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.14
       RHH_5 12 lleeLeewAdeegRsvS 28
                lle+L   Ade +R+++
  KIR60743.1 44 LLEALSAAADEITRDLA 60
                79*********999875 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 1.4e-08
       RHH_5   3 RvnvtLPeelleeLeewAdeegRsv 27 
                 R+nv LPe l+ ++ee A+ egRsv
  KIR60743.1 114 RINVRLPEQLKAAIEEAAAREGRSV 138
                 9***********************9 PP

>> HicB  HicB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.6   2.5e-08   7.5e-05      20      50 ..     115     145 ..     112     146 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.5e-08
        HicB  20 FnlRvspeLHarlalaAaeqgvSLNqfveqa 50 
                 +n+R++++L a++  aAa +g S+N++ ++a
  KIR60743.1 115 INVRLPEQLKAAIEEAAAREGRSVNAWLVRA 145
                 8**************************8765 PP

>> DUF1778  Protein of unknown function (DUF1778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.7     6e-08   0.00018       1      36 [.     114     149 ..     114     152 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6e-08
     DUF1778   1 RLelRispeakeliqrAAalsgktltdFvleaalea 36 
                 R+++R+ ++ k++i++AAa +g+++++++++aa +a
  KIR60743.1 114 RINVRLPEQLKAAIEEAAAREGRSVNAWLVRAAAAA 149
                 9******************************99765 PP

>> Arc  Arc-like DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   1.2e-07   0.00035       6      44 ..     114     152 ..     111     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.2e-07
                 EEEEECEHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH CS
         Arc   6 kFnlRlPeevrekvkevAeengRSmNSEilqrveeslkk 44 
                 + n+RlPe ++  + e A   gRS+N  ++     +l++
  KIR60743.1 114 RINVRLPEQLKAAIEEAAAREGRSVNAWLVRAAAAALQR 152
                 569***********************9888777776665 PP

>> HicB_lk_antitox  HicB_like antitoxin of bacterial toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.2e-05     0.065      86     123 .]     109     146 ..     102     146 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.2e-05
  HicB_lk_antitox  86 dgkaeriNitlpervlkriDaavkaagesRSgflakaa 123
                      dg a riN+ lpe++ + i +a++++g+s  ++l +aa
       KIR60743.1 109 DGPAARINVRLPEQLKAAIEEAAAREGRSVNAWLVRAA 146
                      66789**********************99999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.50
# Mc/sec: 1072.83
//
Query:       KIR60744.1  [L=279]
Description: hypothetical protein TK50_23045 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-13   50.9   0.5    1.7e-13   50.5   0.5    1.1  1  DUF4097   Putative adhesin
  ------ inclusion threshold ------
       0.17   12.1   1.0        0.5   10.6   0.1    2.2  2  DUF3253   Protein of unknown function (DUF3253)
        1.5    8.9   5.0        2.7    8.1   0.5    3.0  3  TT_ORF2a  pORF2a truncated protein


Domain annotation for each model (and alignments):
>> DUF4097  Putative adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.5   2.9e-17   1.7e-13      10     251 ..      18     276 ..      10     277 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 2.9e-17
     DUF4097  10 sadvtikesddekitveystakklkkqkve........etggtLsitqkekngvstgfikelssgekskitiylPkktkle...............dlq 85 
                  a v++ +sd+ ++ ve+  ++ +++ +v+        + +g L++t+ ++++ +      + +++  ++ i lP+++ l+               +  
  KIR60744.1  18 VAHVRVAASDRTDTVVEVRPSDETDESDVQaaaqvrvdYANGALQVTGPKRTFDF------SKKSRSVEVSIELPSGSPLSahlvmgdvrctgrlgE-- 108
                 3899*****************9999999988888888889999999999998887......7899*************6666666664444444441.. PP

     DUF4097  86 vkassGdlsvek.........................atklkaetlelksssGdltlsnvsaktltvksesGdvtiegseakklklqltsGdielesls 159
                                                        +  a ++e++++sG ++l  v+++ ++vk ++Gd +i+ ++  + ++ +++Gdi++e++ 
  KIR60744.1 109 -----------CrirttgdvriertgplrlhtgvghvTVDAVAGDAEVSTGSGKVELGEVEGA-ASVKNSNGDTSIDAVT-GDGRVRAANGDIHVERAG 194
                 ...........03333555555667788778887777677999******************86.79**********9986.679*************** PP

     DUF4097 160 letldltsssGdltlsntklegsltitassGdvdlslpeekkaavdassesGdvslpkkreeeekesnsisaseknakkkvsvstssGDitv 251
                 ++ +d+++s G ++l    + g + + ++ G+ d+ ++e ++a +++ + +G+v+           +n+      +++ +v+  ts GDit+
  KIR60744.1 195 AG-IDAKTSNGSIRLG-EVVRGAIVLGTAAGNLDVGIAEGTAAWLEVNTGYGHVRNLL--------ENTGRPGGTEQTVEVRAATSYGDITI 276
                 **.*************.77888****************99***************999........8888888999999************9 PP

>> DUF3253  Protein of unknown function (DUF3253)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       0.4   2.4e+03      56      78 ..     107     127 ..      96     129 .. 0.60
   2 ?   10.6   0.1   8.3e-05       0.5      51      79 ..     181     209 ..     161     211 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.4
                 TSEEEEETTEE--TTT--S--EE CS
     DUF3253  56 GeveilqkGkvvdpatfrGpiRl 78 
                 Ge++i   G v  + + +Gp+Rl
  KIR60744.1 107 GECRIRTTGDV-RI-ERTGPLRL 127
                 55555555543.33.33666666 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 8.3e-05
                 HHHHTTSEEEEETTEE--TTT--S--EEE CS
     DUF3253  51 rlaaaGeveilqkGkvvdpatfrGpiRlr 79 
                   aa+G + + + G  +d +t +G iRl+
  KIR60744.1 181 VRAANGDIHVERAGAGIDAKTSNGSIRLG 209
                 56899**********************97 PP

>> TT_ORF2a  pORF2a truncated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.047   2.8e+02      14      24 ..     113     123 ..      97     128 .. 0.80
   2 ?    8.1   0.5   0.00045       2.7      13      38 ..     183     207 ..     173     210 .. 0.85
   3 ?   -3.2   0.0       1.5   8.7e+03      17      33 ..     262     279 .]     258     279 .] 0.56

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.047
    TT_ORF2a  14 teGdLrvPraG 24 
                 t Gd+r+ r G
  KIR60744.1 113 TTGDVRIERTG 123
                 89999999998 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00045
    TT_ORF2a  13 ateGdLrvPraGaeGefthrsqGair 38 
                 a++Gd+ v raGa G  +  s G+ir
  KIR60744.1 183 AANGDIHVERAGA-GIDAKTSNGSIR 207
                 899*********9.556788899888 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.5
    TT_ORF2a  17 dLrvPraGaeGeft.hrs 33 
                  + v  a + G+ t hrs
  KIR60744.1 262 TVEVRAATSYGDITiHRS 279
                 555556666666665665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 2315.31
//
Query:       KIR60745.1  [L=319]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-26   93.9   0.0    1.9e-26   93.2   0.0    1.3  1  ABC_tran      ABC transporter
    2.9e-14   53.6   1.6    1.6e-09   38.0   0.0    2.4  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
      1e-06   29.4   0.0    1.9e-06   28.5   0.0    1.5  1  DUF4162       Domain of unknown function (DUF4162)
    0.00042   19.9   0.0    0.00095   18.7   0.0    1.8  2  KdpD          Osmosensitive K+ channel His kinase sensor doma
     0.0019   17.8   0.2      0.003   17.2   0.2    1.2  1  SRP54         SRP54-type protein, GTPase domain
     0.0051   17.2   0.9     0.0096   16.3   0.1    1.8  2  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.011   16.0   0.1      0.078   13.2   0.1    2.3  2  AAA_22        AAA domain
      0.015   15.0   1.0      0.036   13.8   1.0    1.7  1  AAA_30        AAA domain
      0.022   15.2   0.0       0.11   13.0   0.0    2.1  1  AAA           ATPase family associated with various cellular 
      0.023   14.4   0.2      0.055   13.2   0.2    1.6  1  AAA_29        P-loop containing region of AAA domain
      0.026   15.0   0.0      0.039   14.4   0.0    1.3  1  AAA_23        AAA domain
      0.027   14.7   0.0      0.076   13.3   0.0    1.8  1  AAA_28        AAA domain
      0.041   14.1   0.0      0.094   13.0   0.0    1.7  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
      0.044   13.5   0.0        1.8    8.2   0.0    2.0  2  AAA_15        AAA ATPase domain
       0.11   12.3   0.1       0.27   11.0   0.2    1.6  2  MukB          MukB N-terminal
       0.18   11.8   0.1        0.3   11.1   0.1    1.3  1  DUF87         Helicase HerA, central domain
       0.23   11.4   2.3       0.61   10.1   0.1    2.6  2  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.0   1.8e-29   1.9e-26       1     136 [.      25     168 ..      25     169 .. 0.95

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 1.8e-29
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 l+ v+l++ +g++ a++G nGaGK+t +++l+ ll  ++G++++ g+dl + e   +r+ igv  q + +++ lt +en             e ++ ++
  KIR60745.1  25 LDGVDLSVPAGTVFALLGANGAGKTTTVRILSTLLAADAGDVRVAGHDLAR-EPDAVRAAIGVTGQFSAVDNLLTGEENlllmadlhhlpraEGRRLAA 122
                 789************************************************.8999******************************9999744444599 PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++l++++l++ + +++    s++SgG+++r+ la++l+ +p++++lDEpt
  KIR60745.1 123 RLLEQFDLTDAARKPA----STYSGGMRRRLDLAMTLVGDPRVIFLDEPT 168
                 **********999998....*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.3   2.3e-05     0.024       2      25 ..      38      61 ..      37      80 .. 0.81
   2 !   38.0   0.0   1.5e-12   1.6e-09     166     297 ..      87     198 ..      71     204 .. 0.88
   3 ?   -2.2   0.0       2.7   2.8e+03     219     248 ..     241     279 ..     198     282 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.3e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl 25
                 +l G+Ng+GK++  ++l+ l  +
  KIR60745.1 38 FALLGANGAGKTTTVRILSTLLAA 61
                689***************999764 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 1.5e-12
      AAA_21 166 igllnifadyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliD 264
                  g+++++++++++ +++ l+ +l + ++  + +l +                   + +++ +d    pa+  S G++r l l+  l  ++   +++++D
  KIR60745.1  87 TGQFSAVDNLLTGEENLLLMADLHHLPRAEGRRLAAR-----------------LLEQFDLTDAARKPASTYSGGMRRRLDLAMTLVGDP---RVIFLD 165
                 6778888888888888888888888888888888888.................78888888888999********************99...****** PP

      AAA_21 265 EpEngLHPkllrrllellkelsrngaQviltTH 297
                 Ep +gL+P+  r  ++l+++l ++g+ ++ltT+
  KIR60745.1 166 EPTTGLDPRSRRNMWQLVRDLVAGGVTIFLTTQ 198
                 ********************************7 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.7
      AAA_21 219 r.........gvvflengdgqelparelSdGtkrllall 248
                 +          v   +  dg  l +r  SdG +r l+ l
  KIR60745.1 241 AdeqgldaarRVLGQVSRDGDALALRVPSDGSLRSLRAL 279
                 034444444455555667788888888899999888544 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   1.8e-09   1.9e-06       1      80 [.     222     307 ..     222     308 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1.8e-09
                 E-HHHHHTTS-SSEEEEE.-------..--.-EEEE-TTS-EEEEE-..-.-----------.----EEEEEEEE---HHHHHHHH CS
     DUF4162   1 GtleeiKrsygknrieve.adaeelleepg.veeveeeggelelkle..d.eeaanellkal.tsgveirsFeeeePsLndIFiek 80 
                 Gt ee+Kr++ +++++++ ad+  l +    + +v+++g+ l l+++  +   + ++ll +l ++ v++ +++++ P L+d+F+ +
  KIR60745.1 222 GTAEELKRRIPGGHVRLRfADEQGLDAARRvLGQVSRDGDALALRVPsdGsLRSLRALLGRLdDQAVQVDELSVHTPDLDDVFLAL 307
                 999***************9888888888887888899999999999943224678899****77*******************975 PP

>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.8   6.2e+03      12      22 ..      43      53 ..      40      77 .. 0.64
   2 !   18.7   0.0     9e-07   0.00095      45     138 ..     118     211 ..      93     236 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.8
        KdpD 12 apGvGktyamL 22
                a+G+Gkt ++ 
  KIR60745.1 43 ANGAGKTTTVR 53
                57889986543 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 9e-07
        KdpD  45 rketealleglevi...prkeveykgkeleeldldailarkpevvlvDelahtnapgsrhekryqdveelLeagidVittvnvqhleslndvvekit 138
                 r+  ++lle++++     + + +y+g   ++ldl   l  +p+v+++De      p sr ++ +q v++l++ g+ ++ t   q le+  ++  +i 
  KIR60745.1 118 RRLAARLLEQFDLTdaaRKPASTYSGGMRRRLDLAMTLVGDPRVIFLDEPTTGLDPRSR-RNMWQLVRDLVAGGVTIFLTT--QYLEEADELADRIA 211
                 5555666666665533233456899999*********************8877766665.678*************98553..45555555554444 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   2.8e-06     0.003       2      41 ..      36      75 ..      35      82 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.8e-06
                EEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSS CS
       SRP54  2 nvillvGlqGaGKTttlaKLaallkkegkkvllvaaDtfR 41
                +v++l+G +GaGKTtt+  L+ ll +++ +v ++  D  R
  KIR60745.1 36 TVFALLGANGAGKTTTVRILSTLLAADAGDVRVAGHDLAR 75
                5889******************************999988 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   9.1e-06    0.0096      25     143 ..      36     166 ..      24     194 .. 0.57
   2 ?   -1.3   0.0       2.4   2.6e+03      81      88 ..     252     259 ..     197     297 .. 0.51

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 9.1e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekd..................ggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleea 104
                  +  l G+ G GK++ vr l + l +d                  +                 ++ ++ ++   + +  ll+ +e+ +l a+ ++l++a
  KIR60745.1  36 TVFALLGANGAGKTTTVRILSTLLAADagdvrvaghdlarepdavR----------------AAIgVTGQF---SAVDNLLTGEENLLLMADLHHLPRA 115
                 56789****************9888886544333333333332221................222233333...4444444443443333333333333 PP

      AAA_16 105 la...........avpelagaeasrllellkrllallsrd.erplvlvlDd 143
                  +           +  ++a++ as     ++r l+l+ +  ++p v++lD+
  KIR60745.1 116 EGrrlaarlleqfDLTDAARKPASTYSGGMRRRLDLAMTLvGDPRVIFLDE 166
                 332222222222213333333336666666666655544314489999996 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.4
      AAA_16  81 llrqllde 88 
                 +l q+ ++
  KIR60745.1 252 VLGQVSRD 259
                 22222222 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   7.4e-05     0.078       7     127 ..      37     195 ..      34     206 .. 0.84
   2 ?   -2.5   0.0       5.4   5.7e+03      42      59 ..     262     279 ..     241     294 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.4e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee..................................erpevvfvtlpsst..sskdllrellralglelk 69 
                 + ++ G  G+GKTt++r l   l ++  a +                                  e+  ++  +l ++   + + l+ +ll++++l   
  KIR60745.1  37 VFALLGANGAGKTTTVRILSTLLAAD--AGDvrvaghdlarepdavraaigvtgqfsavdnlltgEENLLLMADLHHLPraEGRRLAARLLEQFDLTDA 133
                 66899****************99433..333779999***99999999999999999999999888888889999999888999999999999999888 PP

      AAA_22  70 aerlsseellealeqalrarav....ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliL 127
                 a r+  + +   +++ l+ +++    ++++ +DE    l+   + ++++ +r+l+     gv+++L
  KIR60745.1 134 A-RKPASTYSGGMRRRLDLAMTlvgdPRVIFLDEPTTgLDprsRRNMWQLVRDLVA---GGVTIFL 195
                 8.9999999999999999999999999*******9999988644899999899987...5555544 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.4
      AAA_22  42 vvfvtlpsstsskdllre 59 
                  +   +ps++s+++l+  
  KIR60745.1 262 ALALRVPSDGSLRSLRAL 279
                 445555666666655332 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.0   3.4e-05     0.036      20      55 ..      37      72 ..      30     167 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.4e-05
      AAA_30 20 vavltGpAGtGKttalkalreaweaaggrviglApt 55
                v +l G+ G+GKtt+++ l  +++a+ g+v ++ + 
  KIR60745.1 37 VFALLGANGAGKTTTVRILSTLLAADAGDVRVAGHD 72
                77899********************98888887665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0    0.0001      0.11       3      97 ..      40     132 ..      38     215 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0001
                 EESSTTSSHHHHHHHHHHHHTHEE..EEEETTTCS.SSSTTHHHHHHHHHHHHHHHTS..TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHT CS
         AAA   3 lyGppGtGKTllakavakelgvef..leisgsell.skyvgesekkirelfkeakeka..kpsilfiDEidalaksrsgseseeeervvnqLlteldgv 96 
                 l G  G GKT++++ + + l ++   +++ g++l  +     ++  + + f+++ +    +   l++ +++ l +++       ++r+++ Ll+++d  
  KIR60745.1  40 LLGANGAGKTTTVRILSTLLAADAgdVRVAGHDLArEPDAVRAAIGVTGQFSAVDNLLtgEENLLLMADLHHLPRAE-------GRRLAARLLEQFDLT 131
                 88*****************9755444999999999433333444444444444444446555789999999996666.......888888888888855 PP

                 T CS
         AAA  97 k 97 
                 +
  KIR60745.1 132 D 132
                 4 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   5.2e-05     0.055      14      49 ..      27      62 ..      23      68 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.2e-05
      AAA_29 14 ghtieidlkg.atlltGpsGsGKSTllDAiqalLvpa 49
                g ++++  +g ++ l G++G+GK+T +  +++lL ++
  KIR60745.1 27 GVDLSVP-AGtVFALLGANGAGKTTTVRILSTLLAAD 62
                5566665.56699************999999998776 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.7e-05     0.039      20      46 ..      36      62 ..      17      90 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.7e-05
      AAA_23 20 gltlItGpNGaGKTTildAiklaLyge 46
                 ++++ G NGaGKTT ++ +   L  +
  KIR60745.1 36 TVFALLGANGAGKTTTVRILSTLLAAD 62
                699************999988777655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.2e-05     0.076       2      32 ..      38      75 ..      37      85 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.2e-05
      AAA_28  2 ivitGgestGKTtlleaLa....ar..gypvv.pEaar 32
                ++++G+ ++GKTt+++ L+    a+  +++v  ++ ar
  KIR60745.1 38 FALLGANGAGKTTTVRILStllaADagDVRVAgHDLAR 75
                689*************9995553225445555555555 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.9e-05     0.094      63      89 ..     158     184 ..     131     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.9e-05
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllelle 89 
                 ++r++fLDE   +lD++s++++ +l++
  KIR60745.1 158 DPRVIFLDEPTTGLDPRSRRNMWQLVR 184
                 589*******************99986 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0017       1.8      25      48 ..      37      60 ..      28      92 .. 0.86
   2 ?    3.3   0.0     0.053        56     323     363 ..     158     197 ..     149     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0017
      AAA_15 25 ltvliGkNnsGKSsilealdlFln 48
                +  l G+N++GK++ +++l  +l 
  KIR60745.1 37 VFALLGANGAGKTTTVRILSTLLA 60
                56799**************99986 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.053
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitT 363
                 ++ +++++EP + L p   + +++l ++l+  +   +++tT
  KIR60745.1 158 DPRVIFLDEPTTGLDPRSRRNMWQLVRDLVAGGV-TIFLTT 197
                 6779*************************99886.777777 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00025      0.27      28      55 ..      37      64 ..      33      89 .. 0.87
   2 ?   -3.9   0.0         9   9.5e+03     191     213 ..     174     196 ..     172     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
                HHHHHS--SHHHHHHHHHHHHHHS--TT CS
        MukB 28 vttlsGgnGaGksttmaafvtaliPdls 55
                v +l G+nGaGk+tt+  + t l  d  
  KIR60745.1 37 VFALLGANGAGKTTTVRILSTLLAADAG 64
                7899***********9999999888865 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 9
                 HHHHHHHHHHHHHHSSS-HHHHH CS
        MukB 191 edrskfyrlieaslyGGissait 213
                 + r  +++l++  + GG++  +t
  KIR60745.1 174 RSRRNMWQLVRDLVAGGVTIFLT 196
                 56888999999999999987776 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00029       0.3      26      49 ..      38      61 ..      28      68 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00029
       DUF87 26 lAilgsTGsGKSntvavLleelle 49
                +A lg  G+GK++tv++L   l++
  KIR60745.1 38 FALLGANGAGKTTTVRILSTLLAA 61
                89***************9988874 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.73   7.7e+02      13      18 ..     157     162 ..     155     162 .. 0.86
   2 ?   10.1   0.1   0.00058      0.61       1      11 [.     217     227 ..     217     229 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.73
  BCA_ABC_TP_C  13 ndPrVi 18 
                    dPrVi
    KIR60745.1 157 GDPRVI 162
                   6****9 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00058
  BCA_ABC_TP_C   1 rvIAeGtPaEv 11 
                   rvIAeGt +E 
    KIR60745.1 217 RVIAEGTAEEL 227
                   8********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2227.54
//
Query:       KIR60746.1  [L=279]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-25   88.7  16.4    4.5e-25   88.3  16.4    1.1  1  ABC2_membrane    ABC-2 type transporter
    1.2e-13   50.9   7.8    1.2e-13   50.9   7.8    1.9  2  ABC2_membrane_3  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3  16.4     5e-29   4.5e-25       5     209 ..      24     242 ..      21     243 .. 0.88

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 5e-29
  ABC2_membrane   5 allkreflqrwrdpslgllwrliqplllalvfgtvfgn.........lgnsedglnr...............pgllffsvlflafsaltsvapvfe 76 
                    ++l+r++++++r ps++ ++ +++p++++l+f +vfg+         +                        p ++ ++v+  +    t++ + ++
     KIR60746.1  24 TMLRRSLRRMLRYPSMT-VTLVAMPVVFLLLFVYVFGGtlgaglggaV--------PggaaggraayanyvaPAIILMTVTAAV--QGTAITIAMD 108
                    79***************.*******************97665544442........1334444455577788888888888888..8888889*** PP

  ABC2_membrane  77 rergvlerelvsplyslsayvlakvlvelpvsllqalifllivyflvgldls...rf.flflllllltalaasslgllisalapsfedasqlaslv 168
                     ++g+++r +++ +  + ++++++vl++++ ++l +++++++++++ g+++     + + +  +l ++++a+++l+++++ ++ s+e+as+l + +
     KIR60746.1 109 LTEGIIARFRTMHI-ARVSVLTGHVLGSMIQAMLSVVVVTAVAVLV-GFRPAagpGGwLAAAGFLAAVTFALVWLAVALGQVSGSVETASNLPMPL 202
                    **************.*****************************98.*****87522588889999999999*********************999 PP

  ABC2_membrane 169 llpllllsGffipidsmpkwlqwiaylnPltyavealrsnl 209
                    +l+ +l sGf+ p+dsmp  l+w+a++ P+t ++e lr+ l
     KIR60746.1 203 VLLPFLGSGFV-PTDSMPAGLRWFAEYQPFTPIIETLRGLL 242
                    99999999999.******9*******************986 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   1.1     0.026   2.3e+02       4      24 ..      40      60 ..      37      67 .. 0.76
   2 !   50.9   7.8   1.4e-17   1.2e-13     157     337 ..      79     263 ..      73     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.026
  ABC2_membrane_3  4 liitlllPiilvlllglifsn 24
                      ++ + +P++++ll++++f+ 
       KIR60746.1 40 TVTLVAMPVVFLLLFVYVFGG 60
                     557778999999999988875 PP

  == domain 2  score: 50.9 bits;  conditional E-value: 1.4e-17
  ABC2_membrane_3 157 snvasflvgliliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilll..afgl..gipfgnlglllllfl 246
                        +a++++++i+++ ++  ++ +a  i+ + + +i+ +  ++ + + + +++++lg+++ ++l++++++++  ++g+  +   g+++++  ++ 
       KIR60746.1  79 AAYANYVAPAIILMTVTAAVQGTAITIAMDLTEGIIARFRTMHIARVSVLTGHVLGSMIQAMLSVVVVTAVavLVGFrpAAGPGGWLAAAGFLA 172
                      679***************************************************************999954577867777777********** PP

  ABC2_membrane_3 247 lfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffapglgllrlitgd.plweillsliilalfav 337
                         +a++ l+ +l+ ++ + eta+ l +++ l l ++  g++p++++p +l+w++ + Pf+ +++ l  l++ +  + + +l+l++ a++a+
       KIR60746.1 173 AVTFALVWLAVALGQVSGSVETASNLPMPLVL-LPFLGSGFVPTDSMPAGLRWFAEYQPFTPIIETLRGLLMDEpVGNDAWLALAWCAAIAL 263
                      ***********************999555544.4555688899****************************9996666799*****999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 2157.67
//
Query:       KIR60747.1  [L=124]
Description: hypothetical protein TK50_23060 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-06   26.4   0.1    1.6e-05   25.7   0.1    1.5  1  DUF4259   Domain of unknown function (DUF4259)


Domain annotation for each model (and alignments):
>> DUF4259  Domain of unknown function (DUF4259)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.1     9e-10   1.6e-05       1      58 [.       2      50 ..       2     120 .. 0.61

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 9e-10
     DUF4259  1 GaWgtgpFdnDtAaDflaeledakpedrleliiealeevadaeedeyleadegaeala 58
                G+Wg+g+Fd+DtAaD l  ++       +++i+ea++      +   le de   +++
  KIR60747.1  2 GTWGSGNFDDDTAADHLSTVTGRL----VDEIAEAMSG-----DPVRLEPDEYWGVVV 50
                9*******************9984....5778888777.....444455555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 805.90
//
Query:       KIR60748.1  [L=205]
Description: hypothetical protein TK50_23070 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 1622.27
//
Query:       KIR60749.1  [L=407]
Description: serine protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-35  123.4  23.3      2e-35  122.5  23.3    1.4  1  Peptidase_S8   Subtilase family
    1.2e-08   35.5   0.0    2.2e-08   34.7   0.0    1.4  1  Inhibitor_I9   Peptidase inhibitor I9
  ------ inclusion threshold ------
       0.12   13.2   0.0       0.24   12.2   0.0    1.5  1  S8_pro-domain  Peptidase S8 pro-domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.5  23.3   3.3e-39     2e-35       1     283 [.     155     386 ..     155     398 .. 0.85

  Alignments for each domain:
  == domain 1  score: 122.5 bits;  conditional E-value: 3.3e-39
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvl 97 
                   g gv+  ++DtG++ +h d+  +                  +++     +   a+d ng    HGthv G+++++        gva ++k+ +v+vl
    KIR60749.1 155 GTGVTAYIIDTGININHNDFGGQ-----------------AVDGYDAVDNALPAADCNG----HGTHVSGTVGGT------TYGVAKDVKLVAVRVL 224
                   67888889***********9922.................4444444555566666667....***********9......99************** PP

                   STTSB-HH..HHHHHHHHHHHHCT-S....EEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  98 dtsggsmetgteliraieeaaedkvd....vinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitv 190
                   + +g    t++++i++++++  ++      v nmslg +  +++ ++     a+ + +   gv + ++aGN++       a++  ++p+    +itv
    KIR60749.1 225 NCRGRG--TNAGVIGGVNWVTSNHQAgqpaVANMSLG-GGANSSLDT-----AVANSI-ADGVTYAVAAGNSN-------ANACTSSPAAVPTAITV 305
                   666654..459**********977667999*******.777777776.....566666.57************.......7888899999******* PP

                   EEESTTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS-E CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 191 gayttegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAqd 283
                   ga+++++  a+fS++G +       di apG++++s w   +      + ++++sGTSmAsP++agaaA +ls +p +tp++v ++l  tA+ 
    KIR60749.1 306 GATQSNDARASFSNYGTCL------DIFAPGVDVLSAWYSSN------TATNTISGTSMASPHVAGAAARVLSNNPTWTPAQVASYLTSTATA 386
                   ******************9......6*******888888777......3379***************************************64 PP

>> Inhibitor_I9  Peptidase inhibitor I9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   3.6e-12   2.2e-08       1      81 [.      48     124 ..      48     125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 3.6e-12
                   EEEEEE-TTS-HHHHHHHHHHHHH....HHHHTT..--EEEEEEESSSSSEEEEEE-GGGHHHHHTSTTEEEEEEEEEEEE CS
  Inhibitor_I9   1 vYIVtfkeaakaakkassheswhqsllksvlkgedsakagilysYkilfnGfavklteeqaeklrkrpeVesVepDqsvrl 81 
                   +YIV++k+ a   k a + +  ++s   s++k+      ++ + Y  ++nGf v+l+e+ a++l+++p V+ Ve++++v+l
    KIR60749.1  48 SYIVVLKDSAVGGK-AGTRAAAVASSAGSLAKRF---GGSVAQVYGAALNGFEVRLSEAAAKRLAAHPSVAWVEQNHEVSL 124
                   6******9755555.4444444444445666667...899***************************************98 PP

>> S8_pro-domain  Peptidase S8 pro-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     4e-05      0.24      14      72 ..      66     120 ..      48     124 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4e-05
  S8_pro-domain  14 AdrvAkkhgfenlgqigeleghYlfrhsepkkrskrslrhkreerLakdpkVkwaeqqe 72 
                    A +vA+ +g    +  g+  + Y    + ++ r  +    +  +rLa++p+V w+eq +
     KIR60749.1  66 AAAVASSAGSLAKRFGGSVAQVYGAALNGFEVRLSEA---A-AKRLAAHPSVAWVEQNH 120
                    6666666666555555555566666665554444433...3.569************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 2466.14
//
Query:       KIR60750.1  [L=258]
Description: nucleotidyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0073   16.6   0.0      0.011   16.0   0.0    1.3  1  NTP_transf_2  Nucleotidyltransferase domain
  ------ inclusion threshold ------
      0.099   12.7   0.0       0.14   12.2   0.0    1.2  1  Polbeta       Polymerase beta, Nucleotidyltransferase
       0.11   12.7   0.0       0.28   11.4   0.0    1.7  1  DUF4111       Domain of unknown function (DUF4111)


Domain annotation for each model (and alignments):
>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.8e-06     0.011      15      43 ..      25      54 ..      10      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.8e-06
                  SEEEEEHHHHCTTSCTT.SSEEEEEEESTT CS
  NTP_transf_2 15 akvvlfGSyarGtalkg.SDiDllvvlpee 43
                  + +++ GS+a G + +g SD+D++++  + 
    KIR60750.1 25 VGAYAAGSVALGAYQPGrSDVDVALLCAKA 54
                  567899*****************9987665 PP

>> Polbeta  Polymerase beta, Nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.4e-05      0.14      12      55 ..      23      67 ..      17      89 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.4e-05
                HHHSTTEEEEEE-S----.--EEEEEEEESS---HHHHHHHHHHH CS
     Polbeta 12 eielaylFGSrakgkare.eSDiDlavllkekldleeelelaael 55
                ++  ay  GS+a g +++ +SD+D+a+l+ + l   ++ el a l
  KIR60750.1 23 DLVGAYAAGSVALGAYQPgRSDVDVALLCAKALPAGRKRELVARL 67
                56779999*******99879*********9995555555555444 PP

>> DUF4111  Domain of unknown function (DUF4111)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.7e-05      0.28      32      76 ..     187     230 ..     149     237 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.7e-05
                 HHHHHHHHHHHHHHHS----HHHHHHHHGGGS-HHHHHHHHHHHH CS
     DUF4111  32 yvvLtLaRvlatletgeilsKdeaaewalerlPeeyrpllaeArk 76 
                  +vL  +R+l+ +++g  l+K +a++ ++ r  +  + l+++A +
  KIR60750.1 187 DAVLGACRALVRCRDGDWLPKVAAGRRLVGRG-HPAAGLIERAIA 230
                 569999*******************9998876.666777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 2142.92
//
Query:       KIR60751.1  [L=162]
Description: dynein regulation protein LC7 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-15   56.5   0.3    7.7e-15   54.4   0.0    1.9  2  Robl_LC7  Roadblock/LC7 domain


Domain annotation for each model (and alignments):
>> Robl_LC7  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   4.3e-19   7.7e-15       3      90 ..      45     132 ..      43     134 .. 0.95
   2 !    2.1   0.1    0.0094   1.7e+02      20      46 ..     131     158 ..     130     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 4.3e-19
                 HHHHHHCCHHCTECEEEEEETTS-EEEECCSSSS-HHHHHHHHHHHHHHHHHHHHHCTSSSECEEEEEETTEEEEEEECTTTEEEEEE CS
    Robl_LC7   3 eelleelqsvpgvrgalvvskdGlviatstldnddadqlAalasgllsaakaaarelgegelkelliegkkgelyltpagegalLvvl 90 
                 +el ++  + pgv+g+++   dGl+i +   ++ d + lAala++  +++++++ +lg+ge+++++++ ++g+l ++++ + alL+v+
  KIR60751.1  45 QELADLRLQIPGVHGCVLGGVDGLLITHNMQTDVDPNDLAALAATTYGLGRQVGLRLGQGEFQQSTVRNDRGYLSVYAVSPQALLAVV 132
                 578888999*******************8888999**************************************************996 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.0094
                 EEETTS-EEEE.CCSSSS-HHHHHHHHH CS
    Robl_LC7  20 vvskdGlviat.stldnddadqlAalas 46 
                 vv +d + +a+ +   ++ a++lAal++
  KIR60751.1 131 VVGQDSINVARlHLHAPSTAERLAALLQ 158
                 88899999999999999********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1168.42
//
Query:       KIR60752.1  [L=123]
Description: hypothetical protein TK50_23090 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 900.84
//
Query:       KIR60753.1  [L=251]
Description: hypothetical protein TK50_23100 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00058   20.0 148.0      0.016   15.3  79.9    2.2  2  HC2        Histone H1-like nucleoprotein HC2


Domain annotation for each model (and alignments):
>> HC2  Histone H1-like nucleoprotein HC2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3  79.9   8.7e-07     0.016      31     180 ..       5     155 ..       1     156 [. 0.54
   2 !    3.6  78.8    0.0034        62      13     137 ..     133     247 ..     126     250 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.7e-07
         HC2  31 kktvvrKvaaKKtaarKtvakktvakkkvaakkaaakkaavkkav..akkvvakkkvakKavAKKaaakKvvakkv.vakKtvakkaaaakKpaakkav 126
                 +k++  + aa++t+a+Kt+a+   +  + aa  +a+++++v ka   a+ + a + +akKavAKKaaa Kv++ ++ v  +t+akk a+a ++ akka 
  KIR60753.1   5 QKAT-TRPAAQRTTAKKTAAAGRATGTTRAA-TTATRRSTVTKASpnASGAGAGRVPAKKAVAKKAAATKVATSRTpVGSRTAAKK-APATRASAKKAP 100
                 3333.44566666666666665555555555.444566666666422455556667777777777777777654431555555555.555555555554 PP

         HC2 127 .akkaaarKaaakKava.KkaastckkkhkkkaackrvasssakraasgsKsrlrt 180
                  ak ++arK++a+K+ a K +a+++ +++   aa kr+++ + k+  +++K+   t
  KIR60753.1 101 aAKTTTARKTTAAKTTAaKTTATKTARSATGAAATKRTTAATKKA-SPAAKRTTTT 155
                 256666777765555440444444555666666666666665555.7777776665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0034
         HC2  13 tAakkaavrKpa..AkKa..aakktvvrKvaaKKtaarKtvakktvakkkvaakkaaakkaavkkavakkvvakkkvakKa.vAKKaaakKv..vakkv 104
                 +A+k     +++   kKa  aak+t+   +aaK+t+a K  ++ ++a+k+++a  aaakka+   ++ak+++a   +akKa +AKK++a+K+  ++k  
  KIR60753.1 133 AATK-----RTTaaTKKAspAAKRTT--TTAAKRTTAAK--RAGATAAKRTTA--AAAKKAP---TAAKRTAA---AAKKApAAKKTTARKTtvAKKAP 214
                 2222.....22221344322444444..56777777766..333333333333..3555554...34555443...23443245555555532145667 PP

         HC2 105 vakKtvakkaaaakKpaakkavakkaaarKaaa 137
                 +akKt+a+k+++++ +a ++a+akka+arK++ 
  KIR60753.1 215 AAKKTTARKTTSSRSTATRTATAKKAPARKSTS 247
                 9999999999999****************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2345  (0.130794); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                       191  (0.0106531); expected 17.9 (0.001)
Passed Fwd filter:                       102  (0.00568911); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.64u 0.40s 00:00:02.04 Elapsed: 00:00:00.62
# Mc/sec: 1226.73
//
Query:       KIR60754.1  [L=472]
Description: ribonuclease II [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-39  136.8   0.0    1.4e-39  136.3   0.0    1.1  1  RNB            RNB domain
    1.1e-18   66.9   4.6    1.1e-18   66.9   4.6    3.7  5  RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain


Domain annotation for each model (and alignments):
>> RNB  RNB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3   0.0   1.6e-43   1.4e-39       3     316 ..      47     353 ..      46     361 .. 0.86

  Alignments for each domain:
  == domain 1  score: 136.3 bits;  conditional E-value: 1.6e-43
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB   3 dlrdllvitIdpedakdlDdAisieklpngnyelgVhIADvshyvkegspldkearkratsvyLpekvvpMLPqelsedlcSLnpgedrlalsvlidvd 101
                 d +d +++t+dp++++dlD+A+++ + ++g++++  +IADv+  v++g +l++e+ +r+++vyLp+ +vp+ P++lse+ +SL+p++dr a++ +id+d
  KIR60754.1  47 DRTDVPFVTVDPATSRDLDQAMHLARRSSGGFRVRYAIADVAAHVRPGGALEEETWRRGQTVYLPDGNVPLHPETLSEGAASLLPDQDRAAVVWTIDLD 145
                 567899********************************************************************************************* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 102 ekgevlsveiylsvIkskarltydevqdlleqkdekeekktaedLellyelakalrkkRlkkgalefdspeikllldedkgnrielkveeetkahslve 200
                 ++ge   v  +++ ++s+a+l+y  vq++ +      ++   e + ll el   l ++ l++ga+++  pe +++ d  +g r+ l+   +   ++  +
  KIR60754.1 146 ADGETVAVVLERALVRSRAKLDYVGVQAAAD------AGRLPEPIALLPELGALLTARGLRRGAVNLPLPEQDVEPDG-DGWRLVLR--GPVPMEEHNA 235
                 ******************************4......445899*******************************9999.55444444..3333444446 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx......xxxxx RF
         RNB 201 elmllANelvArflseleipailriheepsnekledliklakklglklednsskknlqeslekleeee.aeqllselllrllkeakys......sepvg 292
                 ++ ll+  ++A+ + + +i ++lr+ ++p +e ++ l++ a+ lg+  +d     ++   l++    e    ++  + ++l++ a y       +e+  
  KIR60754.1 236 QISLLTGMAAADIMLAGGI-GLLRTMPPPRPEAVARLRTAAAPLGVHWPDGVGVGEVLAGLDAS---EpRAAAFVDQAAELMRGAAYTafdgarPEQPA 330
                 7788899999998887776.789*******************9999955555554555555555...44558888888999999999944444444489 PP

                 xxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 293 HfgLaleeYthfTSPirRYpDlvv 316
                 H g+a+  Y+h+T+P+rR +D + 
  KIR60754.1 331 HGGVAA-AYAHVTAPLRRLADRYA 353
                 999986.7*************875 PP

>> RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3      0.54   4.8e+03      39      52 ..      48      61 ..      38      62 .. 0.75
   2 ?   -1.0   0.3      0.19   1.7e+03      37      48 ..     148     159 ..     137     167 .. 0.69
   3 ?   -3.5   0.1       1.2   1.1e+04      22      37 ..     265     279 ..     264     281 .. 0.69
   4 ?   -2.2   0.9      0.47   4.2e+03      22      47 ..     378     401 ..     376     408 .. 0.70
   5 !   66.9   4.6   1.2e-22   1.1e-18       1      58 [.     410     471 ..     410     472 .] 0.93

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.54
  RNase_II_C_S1 39 rvrVrLveADvatr 52
                   r  V  v++D+at 
     KIR60754.1 48 RTDVPFVTVDPATS 61
                   56677789999986 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.19
  RNase_II_C_S1  37 GervrVrLveAD 48 
                    Ge+v V L++A 
     KIR60754.1 148 GETVAVVLERAL 159
                    666777766664 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.2
  RNase_II_C_S1  22 PaVeArv.eggaglplG 37 
                    P  +Ar+ ++  ++plG
     KIR60754.1 265 PEAVARLrTA--AAPLG 279
                    6678999544..77877 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.47
  RNase_II_C_S1  22 PaVeArveggaglplGervrVrLveA 47 
                    P V+A  +   ++ + +r  V+L+eA
     KIR60754.1 378 PQVMAATDR--TAGAATRGAVELAEA 401
                    667777755..666778888888887 PP

  == domain 5  score: 66.9 bits;  conditional E-value: 1.2e-22
  RNase_II_C_S1   1 etFdAvVvdvddrg......gtVqladPaVeArveggaglplGervrVrLveADvatrrvrFep 58 
                    etFdA  ++vd+ +      gtV l+ P+V Ar++g  +lplGervrVrLv+AD+atr+v F++
     KIR60754.1 410 ETFDAAALEVDEPRpgrqpgGTVALDAPPVRARCTG--ALPLGERVRVRLVTADPATRKVLFAL 471
                    89*********944467888****************..************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 3019.14
//
Query:       KIR60755.1  [L=232]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-21   77.1   0.9    2.1e-21   76.3   0.9    1.4  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    9.3e-05   22.9   0.3    0.00015   22.2   0.3    1.3  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
    0.00013   21.9   3.5    0.00013   21.9   3.5    2.2  2  Rossmann-like   Rossmann-like domain
    0.00013   22.1   0.1    0.00021   21.5   0.1    1.3  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    0.00024   20.5   1.5    0.00095   18.6   0.6    2.2  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
     0.0004   20.4   0.0    0.00056   19.9   0.0    1.2  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
     0.0017   17.8   0.9     0.0026   17.2   0.9    1.3  1  adh_short       short chain dehydrogenase
     0.0034   17.0   0.7     0.0096   15.5   0.7    1.8  1  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
     0.0035   17.2   1.0     0.0052   16.7   1.0    1.2  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
  ------ inclusion threshold ------
       0.03   14.2   0.4      0.057   13.3   0.4    1.4  1  KR              KR domain
      0.046   14.0   0.3      0.099   12.9   0.3    1.5  1  TrkA_N          TrkA-N domain
       0.12   12.0   0.1       0.21   11.2   0.1    1.5  1  ApbA            Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.9   1.4e-24   2.1e-21       1      97 []      15     115 ..      15     115 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 1.4e-24
                    EEEEE.TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC........-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHT CS
  F420_oxidored   1 kigii.GaGnmgealasgllaagaqpheivvansrnpekaeelaeelg........vkvtavdneeaaeeadvvvlavkpedveevlselakdalk 87 
                    ++gii G+G++g++la ++++ag   ++++++ sr+ e+a+e+a+e+         ++v + dnee+a+++dvvv+av++  +++++++l +  l+
     KIR60755.1  15 TVGIIgGTGDQGRGLAYRFARAG---QSVLIG-SRSAERAAEAAAEIAalrgvpadAEVAGADNEEVARRSDVVVIAVPWDGHAATVAAL-AGPLA 105
                    58*********************...****88.**************9******************************************.999** PP

                    TSEEEEESSS CS
  F420_oxidored  88 gklvisvlag 97 
                    gk+v++++++
     KIR60755.1 106 GKIVVDCVNP 115
                    *******997 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.3   9.9e-08   0.00015       2     119 ..      16     135 ..      15     137 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 9.9e-08
                     EEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGC.TT-SEEEE-SCHHHHHHHHHHH..HHTTSEE CS
  Semialdhyde_dh   2 vaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeel.kevdivflalpagvskelapkl..aeagvkv 93 
                     v+i+G+tG  G+ l+ + ++  +  l+   s +r a ++ ae +      +d +v  +d+ee+ ++ d+v+ a+p + +++ +++l    ag +v
      KIR60755.1  16 VGIIGGTGDQGRGLAYRFARAGQSVLIGSRSAER-AAEAAAEIAALRGVPADAEVAGADNEEVaRRSDVVVIAVPWDGHAATVAALagPLAGKIV 109
                     9**************9999965544444444444.66666666666778899999998888887**********************3435899** PP

                     EESSSTTTTSTTSEBE-HHHHGGGGG CS
  Semialdhyde_dh  94 iDlssdfRlkddavyvlpevnreaik 119
                     +D    + ++ + +y l     +a++
      KIR60755.1 110 VDCVNPLGFDRQGPYALTVAEGSAVQ 135
                     **************999876666665 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   3.5   8.4e-08   0.00013      10     104 ..      13     113 ..       6     127 .. 0.74
   2 ?    2.1   0.2      0.11   1.6e+02      45      91 ..     143     189 ..     117     211 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 8.4e-08
  Rossmann-like  10 rlsvGiis.aGrvGtalgaaleraghvvv.....gisaisaasreraerrlP...dvpvlevedvaaraellllavPdaelpglvkglaatgavra 96 
                     l+vGii+ +G  G  l++ ++rag  v      +  a  aa++  a r +P   +v+ ++ e+va+r++++++avP    +  v+ la      a
     KIR60755.1  13 GLTVGIIGgTGDQGRGLAYRFARAGQSVLigsrsAERAAEAAAEIAALRGVPadaEVAGADNEEVARRSDVVVIAVPWDGHAATVAALAGP---LA 105
                    589****637***************988532111233445555666667788422234457899*************98888888888876...78 PP

  Rossmann-like  97 Gtivahts 104
                    G+iv+   
     KIR60755.1 106 GKIVVDCV 113
                    88888765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.11
  Rossmann-like  45 asreraerrlPdvpvlevedvaaraellllavPdaelpglvkglaat 91 
                     sr  a       p+l  ++v +    +l++  d el ++v  laa 
     KIR60755.1 143 DSRVCAAFNHVSAPLLADPEVDRIDLDVLICTEDRELVDVVGALAAR 189
                    44444444445555666666655555578888999999999999986 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   1.4e-07   0.00021       2      90 ..      16     113 ..      15     117 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.4e-07
                    EEEE.--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT..........EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EE CS
  NAD_binding_2   2 igfi.GlGvMGsnmalnllkagykvavynrtkekveelvaeg..........akaaesieelvasldvvitmvkagkavdeviegllealkkgdil 86 
                    +g+i G+G  G+ +a ++++ag++v +  r++e++ e++ae            +a ++ ee++++ dvv++ v+ + +  +v     +   +g+i+
     KIR60755.1  16 VGIIgGTGDQGRGLAYRFARAGQSVLIGSRSAERAAEAAAEIaalrgvpadaEVAGADNEEVARRSDVVVIAVPWDGHAATVAAL--AGPLAGKIV 109
                    6777369****************************9999997788899999544556778999999*********9998887654..444578888 PP

                    EE-S CS
  NAD_binding_2  87 idgs 90 
                    +d+ 
     KIR60755.1 110 VDCV 113
                    8885 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.6   6.3e-07   0.00095      31     102 ..       8      91 ..       2      98 .. 0.77
   2 ?   -3.9   0.0         5   7.5e+03      53      70 ..     205     222 ..     202     226 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6.3e-07
                   BS-GTTSEEEEE.S-SHHHHHHHHHHHHTT-EEEEESSSHHHHH...........CHHHHTCEECSHHHHHHH-SEEEE-S--S CS
  2-Hacid_dh_C  31 gkelsgktvGii.GlGrIGqavakrlkafgmkviaydrskkkee...........eeeelgvelvsleellaesDivslhlplt 102
                     ++sg tvGii G+G+ G+ +a r++  g  v++ +rs ++ +             ++ +v  ++ ee+ ++sD+v++++p  
    KIR60755.1   8 LPDVSGLTVGIIgGTGDQGRGLAYRFARAGQSVLIGSRSAERAAeaaaeiaalrgVPADAEVAGADNEEVARRSDVVVIAVPWD 91 
                   56899******9459**********************99986654444444443323344555678999*********999965 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 5
                   HHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  53 krlkafgmkviaydrskk 70 
                   + ++af +++ia++++ k
    KIR60755.1 205 HQIEAFTANLIAINKRYK 222
                   556778888887776655 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.7e-07   0.00056       2      94 ..      16     105 ..      15     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.7e-07
                     EEEE.--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHHHHHHHHHHCCC-- CS
  NAD_Gly3P_dh_N   2 iavl.GaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlvattdlaealkgadiivlvvPsqalrevlkklkgllk 94 
                     ++++ G+G  G  lA  +a++g++v + +r++e + e   +  + + L+g+  ++++ a +d +e+++++d++v++vP    + +++ l+g l+
      KIR60755.1  16 VGIIgGTGDQGRGLAYRFARAGQSVLIGSRSAERAAE---AAAEIAALRGVPADAEV-AGADNEEVARRSDVVVIAVPWDGHAATVAALAGPLA 105
                     5666257*******************99998877765...55667889999999997.67899***************9999988888887663 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.9   1.8e-06    0.0026       3      51 ..      16      67 ..      14      88 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.8e-06
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT...TSEE CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee...gaka 51
                v ++G+++  Gr +a+++a++G +v++ +rs+e+++e+a+e+ ++    a+a
  KIR60755.1 16 VGIIGGTGDQGRGLAYRFARAGQSVLIGSRSAERAAEAAAEIAALrgvPADA 67
                6799999999********************************9975332333 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.7   6.4e-06    0.0096       4      73 ..      13      93 ..      10     106 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.4e-06
                TS-EEEES.-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHH....TT-....EE..EEHHHHHHT-SEEEE-S-HHHH CS
        IlvN  4 gkkiaviG.yGsqGhaqalnlrdsgldvvvglregsksvkkAke....egf....ev..ltvaeavkkadvvmiliPDelq 73
                g ++ +iG  G qG+  a  +  +g  v +g r+ ++ ++ A e    +g+    ev  ++ +e+++++dvv+i +P   +
  KIR60755.1 13 GLTVGIIGgTGDQGRGLAYRFARAGQSVLIGSRSAERAAEAAAEiaalRGVpadaEVagADNEEVARRSDVVVIAVPWDGH 93
                6789999548***********************999766665542222222111133115678999999999999995544 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.0   3.5e-06    0.0052       1      59 [.      15      73 ..      15      87 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.5e-06
                EEEEE--.SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHH CS
     3HCDH_N  1 kvaviGa.GtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeee 59
                +v++iG  G  G+g+a+ fa+ag +V +  +s+e++++a+++i++ l+ + ++ ++  ++
  KIR60755.1 15 TVGIIGGtGDQGRGLAYRFARAGQSVLIGSRSAERAAEAAAEIAA-LRGVPADAEVAGAD 73
                58999866**********************************997.55555555555444 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.4   3.8e-05     0.057       5      61 ..      18      73 ..      15     101 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.8e-05
                EETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE---- CS
          KR  5 itGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaD 61
                i+GG+G  G+ la   a+ g++ +++ sRsa+  ++++a+ia+l+   a+ ev+ aD
  KIR60755.1 18 IIGGTGDQGRGLAYRFARAGQS-VLIGSRSAERAAEAAAEIAALRGVPADAEVAGAD 73
                99***************99976.5678***999999999*****9998888888777 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   6.6e-05     0.099       2      84 ..      18     102 ..      17     115 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.6e-05
                 EEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTT..SEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHH CS
      TrkA_N   2 iiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeg..levvvgdatdeevLeeagiekadaviaatgddeanilavllak 84 
                 ii G G+ Gr la ++ ++g++v++  ++ er++e+++e   l+ v +da    +  e  + + d+v++a++ d   + +++la 
  KIR60755.1  18 IIGGTGDQGRGLAYRFARAGQSVLIGSRSAERAAEAAAEIaaLRGVPADAEVAGADNEEVARRSDVVVIAVPWDGHAATVAALAG 102
                 7899**************66468888889999999988876677888999888888999999999******99977766666664 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00014      0.21       3      94 ..      19     106 ..      17     147 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
                 EES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECT CS
        ApbA   3 ilGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealeeikplldp 94 
                 i G+G +G+ la++ a+ag+ v +  rs+ r+++   +   l+++       + e++ a++++ ++  d+v+++v+    ++ +++++  l+ 
  KIR60755.1  19 IGGTGDQGRGLAYRFARAGQSVLIGSRSAeRAAEAAAEIAALRGVP-----ADAEVAGADNEEVARRSDVVVIAVPWDGHAATVAALAGPLAG 106
                 679*******************999999966666666666666666.....222222222346778999999999876666666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1772.91
//
Query:       KIR60756.1  [L=153]
Description: hypothetical protein TK50_23115 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.98   10.3   9.7       0.15   13.0   4.0    1.9  2  DUF3306   Protein of unknown function (DUF3306)
          4    7.5   7.4          1    9.4   3.8    1.6  2  KCT2      Keratinocyte-associated gene product


Domain annotation for each model (and alignments):
>> DUF3306  Protein of unknown function (DUF3306)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   4.0   1.6e-05      0.15      22      99 ..      12      88 ..       5      97 .. 0.65
   2 ?    0.7   0.3      0.11   9.5e+02      39      51 ..     120     132 ..     101     151 .. 0.46

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
     DUF3306 22 paqseeeaaeeeeaaeaeesveaaapeaeeaeeaeaeeeletlpdvealtaesdfaaFlakgVseevkraALrklFad 99
                pa++ + ++++++a++a++ ++a ap+a++  ++++++  ++l + ++  a+++ +a++++ V+     aA++k F++
  KIR60756.1 12 PAPTAAPTSAAATATTAAAPTTAPAPTAAT-PASADPAADKKLCETAKKIADDSKKALMKAVVDGGDPAAAMKKAFTE 88
                333333334444444444444445555444.444455555666666677778899*********************74 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.11
     DUF3306  39 eesveaaapeaee 51 
                 +++veaaa+++++
  KIR60756.1 120 AADVEAAAEDSAA 132
                 2222222222222 PP

>> KCT2  Keratinocyte-associated gene product
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.8   0.00011         1      11      71 ..      17      79 ..      11      96 .. 0.68
   2 ?   -0.9   0.1      0.17   1.5e+03       4      31 ..     101     128 ..      88     146 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00011
        KCT2 11 kaptaekssaasaasrvsaa.ssvseeeadasedtsleeed.lltlnsspsvikdtldnGdyG 71
                ++++a   ++++aa+++++a +++++ +ad  +d++l e    ++ +s  + +k  +d Gd  
  KIR60756.1 17 APTSAAATATTAAAPTTAPApTAATPASADPAADKKLCETAkKIADDSKKALMKAVVDGGDPA 79
                33334444444555555544134556778999**9997765378999999**********944 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.17
        KCT2   4 akvsttlkaptaekssaasaasrvsaas 31 
                 ++v+ +l+a  ae  + a aa   +aa 
  KIR60756.1 101 SEVAIALAAVGAEARRIANAADVEAAAE 128
                 4555566666666666555554444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1012.25
//
Query:       KIR60757.1  [L=281]
Description: 3-methyl-2-oxobutanoate hydroxymethyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.4e-104  346.5   0.1   9.6e-104  346.4   0.1    1.0  1  Pantoate_transf  Ketopantoate hydroxymethyltransferase
    5.8e-06   25.9   1.0    3.4e-05   23.4   0.0    2.0  2  PEP_mutase       Phosphoenolpyruvate phosphomutase


Domain annotation for each model (and alignments):
>> Pantoate_transf  Ketopantoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.4   0.1  1.1e-107  9.6e-104       1     258 [.      20     276 ..      20     277 .. 0.99

  Alignments for each domain:
  == domain 1  score: 346.4 bits;  conditional E-value: 1.1e-107
  Pantoate_transf   1 kvtvkdlrkmkeegekiamlTaydattAklvdeagvdviLVGDslgmvvlgyestlpvtleemiyhtkaVargakralvvadlPfgsyeaskeq 94 
                      +v+++dl ++ke+gek++mlT+yd+ tA+++d+ag+ ++LVGDs++++v gye+tlpvt +e++  ++aV+r++k+al+v+dlPfgsye+ ++q
       KIR60757.1  20 RVRTRDLLAAKERGEKWSMLTSYDQYTASIFDAAGIPALLVGDSAANNVFGYETTLPVTTDELLPLVRAVVRATKQALIVGDLPFGSYEEGPTQ 113
                      57899***************************************************************************************** PP

  Pantoate_transf  95 alenAarllkeggadavKleggaevaetvkalveagipVmgHiGltPqsvnalggykvqgkteeeaeklledakaleeaGafalvlEavpaela 188
                      al++A+r++kegg++avKlegg++ a++v+a+v agipVm+H+G+tPqs ++lggy+vqg+  ++a+++++da+a++eaGafa+vlE+vp e+a
       KIR60757.1 114 ALRTAVRFMKEGGCHAVKLEGGRRCADQVAAIVGAGIPVMAHVGFTPQSEHTLGGYRVQGRG-DTADEVFADALAVAEAGAFAVVLEMVPGEVA 206
                      *************************************************************5.6788*************************** PP

  Pantoate_transf 189 keiteklsiptIGIGAGaacdGqvlvlhDllgltekfkpkfvkkyaelaesieeavkaYaeevkegsFPa 258
                      k+it +l ipt+GIGAG+++d+qvlv++D+ gl + ++p+fvk+ya+la +++ea +++a+ev+ g+FPa
       KIR60757.1 207 KRITGELAIPTVGIGAGPDTDAQVLVWQDMAGLRTGRAPRFVKRYADLAGALTEATRRFADEVRGGEFPA 276
                      *********************************************************************7 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   3.8e-09   3.4e-05       5     107 ..      30     135 ..      26     156 .. 0.83
   2 ?    1.1   0.2     0.025   2.2e+02      80     105 ..     174     199 ..     167     214 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3.8e-09
  PEP_mutase   5 hakgeplvlpnawDalsakiveeagfkalatsSlavaaslGvpDgeelpleellaavraiaevvslPliv.DledG.ygespee.vaetvrrliaaGvv 100
                 +++ge   ++  +D  +a+i+ +ag++al ++  a   + G++ +  ++++ell +vra++++++  liv Dl  G y+e p + ++ +vr + + G+ 
  KIR60757.1  30 KERGEKWSMLTSYDQYTASIFDAAGIPALLVGDSAANNVFGYETTLPVTTDELLPLVRAVVRATKQALIVgDLPFGsYEEGPTQaLRTAVRFMKEGGCH 128
                 6677888999******************************************************98887659887746665554156666667777888 PP

  PEP_mutase 101 gvniEDk 107
                 +v +E  
  KIR60757.1 129 AVKLEGG 135
                 9999876 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.025
  PEP_mutase  80 ygespeevaetvrrliaaGvvgvniE 105
                  g++++ev +    +++aG+ +v++E
  KIR60757.1 174 RGDTADEVFADALAVAEAGAFAVVLE 199
                 46777777778888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1791.47
//
Query:       KIR60758.1  [L=602]
Description: NAD+ synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-65  220.3   0.0    2.7e-65  219.9   0.0    1.2  1  NAD_synthase   NAD synthase
    1.9e-27   96.2   0.0    2.7e-27   95.8   0.0    1.2  1  CN_hydrolase   Carbon-nitrogen hydrolase
     0.0077   15.9   0.0      0.013   15.2   0.0    1.2  1  Asn_synthase   Asparagine synthase
  ------ inclusion threshold ------
      0.017   14.6   0.0      0.028   13.9   0.0    1.3  1  QueC           Queuosine biosynthesis protein QueC
      0.061   12.1   0.1       0.09   11.6   0.1    1.2  1  tRNA_Me_trans  tRNA methyl transferase


Domain annotation for each model (and alignments):
>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.9   0.0   7.5e-69   2.7e-65       1     241 [.     326     574 ..     326     575 .. 0.98

  Alignments for each domain:
  == domain 1  score: 219.9 bits;  conditional E-value: 7.5e-69
                   HHHHHHHHHHHHHHHCTTSEEEEEE-SSHHHHHHHHHHHHHHTCGEEEEEE--SSSTTHHHHHHHHHHHHHHTSEEEE---HHHHHHHHHHHHHHH- CS
  NAD_synthase   1 lieelvdflkeyvkkagakgvvlGlSGGvDSslvaalavkalgkenvlalllPssvsseedvedalalaenlgievktidikpivrafeqelkeake 97 
                   ++++lv  l++yv+k+ + +vvlGlSGG+DS++vaalav+alg+++v+++ lPs  sse++  da  la++ g+++ + +i+p+v +f ++++ +  
    KIR60758.1 326 VWQALVLGLRDYVDKNRFPSVVLGLSGGIDSAVVAALAVDALGPDRVVGVSLPSRHSSEHSRADAEDLAKRTGLDYRVEPIQPMVDTFLANMSLSG- 421
                   58999************************************************************************************9998877. PP

                   HHHHHHHHHHHHHHHHHHHHHHHTEEEB---BHHHHTTT-S-TTTTT--SBETTTTS-HHHHHHHHHHTT...........--HHHHCS--B--SST CS
  NAD_synthase  98 dlakgNlkaRiRmailyaianklnllvlgTgnksElvvGyfTkyGDgaadlapiaellKtevkeLakeln...........vPervlkkpPsAdLkp 183
                    ++ +Nl+aR+R +il+a +n++++lvl TgnksEl+vGy T+yGD  ++++p++++ Kt + +Lak+ n           +Pe+ + kpPsA+L p
    KIR60758.1 422 -VTVENLQARVRGVILMALSNQEGHLVLTTGNKSELAVGYSTLYGDSVGGFNPVKDVWKTLIWRLAKWRNadatrrgetppIPENSIGKPPSAELSP 517
                   .999********************************************************************************************* PP

                   T-BHHHHHSS-HHHHHHHHT.HSSSS...HHHHHTTT--HHHHHHHHHHHHHTGGGGSS CS
  NAD_synthase 184 gqtDeeeLgikYdelDeiLk.lvekkkspeeiikekelpaevvekieklvkksehKrkl 241
                   gq D + L+  Yd+lD iL  +v+ +  ++ +++  + +  vv ++ ++v   e+Kr++
    KIR60758.1 518 GQLDSDTLP-DYDVLDPILIgYVDGDLGRTGLVE-SGHDPAVVDRVLRMVDTAEYKRRQ 574
                   *********.*********99**********888.9*********************97 PP

>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.0   7.5e-31   2.7e-27       1     254 [.       5     261 ..       5     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 7.5e-31
                   EEEEEEBB-STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBS.....SSHHHHHHHHBHSSSHHHHHHHHHHHH..HTEEEEEEEEEEEC... CS
  CN_hydrolase   1 rvAvvQlpqkaadleanlqklleliaeAarkgadLivlPElfitgy.....keeahfleaAeaglgetlallaalark..ngiavviglierel... 87 
                   r+A+ Q ++   dl++n +++ +  + Aa+ ga+L+++PE+ +tgy     ++++ f++a++a   ++ +l a+la++   g+ vv+g++  +    
    KIR60758.1   5 RLALSQVNPSVGDLAGNAGLVRRWTRTAADAGAQLVLFPEMVLTGYpvedlVFRRSFVAASQA---ALRRLAADLAADglGGVPVVVGYLDADGppq 98 
                   78*******88****************************************9******98884...555555566665335899****9999669** PP

                   ....CTTEEEEEEEEEEEETTSEEEEEEE-SS--EECTTSCECCGHHTSCS-SSS-EEEETTEEEEEEEGGGGGSHHHHHHHHHT.T-SEEEEBH.G CS
  CN_hydrolase  88 ....tngklqayntavlldldgklvgkyrKlhLfpgeprpptaverelfepgdgipvfdtpvgkiGaaiCyeigfpellralalk.gaeilvnlser 179
                       +++   a n+a +l ++g++v+ y K+hL    p+ + + e  +f pgd+++v+ + ++ + + iC++++      a a++ g+ ++v+ +++
    KIR60758.1  99 vssdAEPGRGARNAAAVL-HGGEVVATYFKHHL----PNYGVFDEDRYFVPGDALTVVRVGGVDVALTICEDMWQAGGPFAAARQaGVGLVVT-ING 189
                   ****55555688999999.9************8....899****************************************9665515666665.899 PP

                   CCCTCHHHHHHHHHHHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEEHH CS
  CN_hydrolase 180 apvpksmgppqwellgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeegvliaeidla 254
                   +p++ ++     + l r ra+e+g  v+++n vgg  q+ l++ g S i++ dG++la+++++ e +l+ ++ l 
    KIR60758.1 190 SPYELNKDDIR-LPLVRRRAAEAGAAVAYVNMVGG--QDELVFEGDSLIVGADGTLLARAPQFVEHLLVHDVELP 261
                   99999998877.777899*****************..*********************************99875 PP

>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.6e-06     0.013      22      73 ..     348     400 ..     341     412 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.6e-06
  Asn_synthase  22 alLSGGlDSSliaalaarqsksplktFsigfeekgsde..akyakevaehlgte 73 
                   + LSGG+DS+++aala   +  p + + + + +++s+e  ++ a+ +a++ g++
    KIR60758.1 348 LGLSGGIDSAVVAALAVDALG-PDRVVGVSLPSRHSSEhsRADAEDLAKRTGLD 400
                   569*************99886.66666666633444441145566777777766 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   7.7e-06     0.028       2      53 ..     346     399 ..     345     431 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.7e-06
                 EEEE--SSHHHHHHHHHHHHH-SEEEEEEEESS-TTSHHHHH..HHHHHHHT-- CS
        QueC   2 avvllSGGlDSttvlalakkegkevealtfdYgqrhkkelea..akkiakelgv 53 
                 +v+ lSGG+DS++v+ala ++     +++++  +rh++e++   a+++ak++g+
  KIR60758.1 346 VVLGLSGGIDSAVVAALAVDALGPDRVVGVSLPSRHSSEHSRadAEDLAKRTGL 399
                 57789****************988888899999999998876115667777775 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   2.5e-05      0.09       3      37 ..     346     382 ..     344     400 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.5e-05
  tRNA_Me_trans   3 vvvalSgGVDSsvaaallkeqg..yevigvflklwee 37 
                    vv +lSgG+DS+v+aal  ++     v+gv l   ++
     KIR60758.1 346 VVLGLSGGIDSAVVAALAVDALgpDRVVGVSLPSRHS 382
                    999**********999987764345677777765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 3600.82
//
Query:       KIR60759.1  [L=449]
Description: glutamine synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.5e-123  409.9   0.0   8.8e-123  409.7   0.0    1.0  1  Gln-synt_C    Glutamine synthetase, catalytic domain
    2.8e-26   91.0   0.1    7.7e-26   89.6   0.0    1.8  2  Gln-synt_N    Glutamine synthetase, beta-Grasp domain
  ------ inclusion threshold ------
      0.014   15.3   0.0       0.13   12.1   0.0    2.2  1  Gln-synt_N_2  Glutamine synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  409.7   0.0  1.5e-126  8.8e-123       2     345 .]     106     446 ..     105     446 .. 0.96

  Alignments for each domain:
  == domain 1  score: 409.7 bits;  conditional E-value: 1.5e-126
                 T-HHHHHHHHHHHHHHTTCEEEEEEEEEEEEESEECCCESSEEEEEEE.TB...B.TSS-TTBHCCCCCTCCHHHHHHHHHHHTT--EECCEEECCCTE CS
  Gln-synt_C   2 rdPRsvlkralarlaeeGltvvvgpElEFflfdkeedkeasksllevdseekgrpaekggyfsvapvdeaedlrreivealealgieveashhEvatgQ 100
                 +dPR+vl+r+l+++ae+G+t++++pE+EFfl+++ +++            +  +p + ggyf++++   a+d+rr+ v ale++gi+ve shhEva+gQ
  KIR60759.1 106 ADPRHVLRRMLSKAAEKGFTFYTHPEIEFFLLENGPQDG-----------SVPTPVDTGGYFEHTTHAVARDFRRQAVLALERIGISVEFSHHEVAPGQ 193
                 69*******************************999977...........45667889***************************************** PP

                 EEEEE--EECHHHHHHHHHHHHHHHHHHHHTT-EEE-SSSSSTTS---BEEEEEEEEECTTEESSB-TTSGGGB-HHHHHHHHHHHHHHHHHHHHHS-S CS
  Gln-synt_C 101 vEinlkfadalkaaDnvvtfKrvvkevArkhgltatFmpKplegdnGsgmHvhlSlwdkdgknlfadeddeyalselarhfigGllkhakaltaltapt 199
                 +Ei+l++adal++aDn++tf++vvkevA + g++a+FmpKp+++++GsgmH+hlSl+ + ++n+f+d +d+++ls++a++fi+Gll+ha++ ta+t+++
  KIR60759.1 194 QEIDLRYADALTTADNIMTFRHVVKEVALSTGVQASFMPKPFTDQPGSGMHTHLSLF-EGERNAFHDGGDPMKLSKVAKSFIAGLLTHAREYTAVTNQW 291
                 *********************************************************.888************************************** PP

                 CCHHHHCSSSTT......SSSBEEEESS-TTCSEEEE-.TSGGCSTEEEECEBTTS-HHHHHHHHHHHHHHHHHTT--------S-SSSS-TTTH..TS CS
  Gln-synt_C 200 vnSYkRlvpgye......aPvalawgarNRsallRipa.skekakrvElRlpdasaNPYLalAallaAgldGienklepgepvekdlyelspeer..kg 289
                 vnSYkRl p++       +P++++wg+ NRsal+R+pa +k+++ rvE+R+ d+++NPYLa+A+ll Agl+Gie+++e+++ +e+d++ ls++er  +g
  KIR60759.1 292 VNSYKRLFPQALpdriteSPAYVCWGHLNRSALVRVPAyGKPNSARVEVRSLDSATNPYLAFAVLLGAGLKGIEEGYELPPGAEDDVWSLSSAERkaMG 390
                 *******76643333333****************************************************************************9999* PP

                 S-B--SSHHHHHHHHHCSHHHCCSS-HHHHHHHHHHHHHCHHHHHCT--HHHHHHH CS
  Gln-synt_C 290 ieelPasleeAlealeedellkevlgeevieaylalkraEleeleeevsdwelery 345
                 +e+lP++l eA++ ++ +el++evlge+v++ +l+ kraE+e++++ev+++e++ry
  KIR60759.1 391 YEALPENLAEAIDVMAGSELVAEVLGEHVFDFFLRNKRAEWEQYRREVTPYERQRY 446
                 *****************************************************998 PP

>> Gln-synt_N  Glutamine synthetase, beta-Grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.0   1.3e-29   7.7e-26       1      83 []      16      99 ..      16      99 .. 0.96
   2 ?   -3.0   0.0       1.1   6.4e+03       5      31 ..     196     222 ..     194     227 .. 0.68

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 1.3e-29
                T--EEEEEEE-SSS-EEEEEEEHHHHHHHTTTT-EEEETTSSTTT------EEEEEEEGGGEEE-SS-SS-...EEEEEEEEE-T CS
  Gln-synt_N  1 evkfvdlqFtDikgklkhvtipadelsedaleegvsFDGSsiegfaeieeSDmlLkPdlstavidPfreek..ktarvicdvydp 83
                +++fv+l+FtD+ g+lk+v+++  el e a+eeg++FDGS iegfa++ eSDm+ +Pd++t+ ++Pf+     + ar++cd++ p
  KIR60759.1 16 DIRFVRLWFTDVLGTLKSVSVAPAEL-EAAFEEGIGFDGSAIEGFARVFESDMVAMPDPTTFQVFPFEGGVsgESARMFCDILLP 99
                589***********************.*****************************************966689********875 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.1
                 EEEEEE-SSS-EEEEEEEHHHHHHHTT CS
  Gln-synt_N   5 vdlqFtDikgklkhvtipadelsedal 31 
                 +dl+++D   +  ++    + ++e al
  KIR60759.1 196 IDLRYADALTTADNIMTFRHVVKEVAL 222
                 899999999888887665555555555 PP

>> Gln-synt_N_2  Glutamine synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.2e-05      0.13       4      52 ..       6      54 ..       3     104 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.2e-05
                  .......------EEEEEEE-TTS-EEEEEEEGGGHHHHHTT-EEE-GG CS
  Gln-synt_N_2  4 eavveqleekqveLieflyvdlaGvtrGkalplasLeekLasGiGltka 52
                  e v+  lee++++++++ ++d  G  +  +++ a+Le+ + +GiG+  +
    KIR60759.1  6 EFVLRTLEERDIRFVRLWFTDVLGTLKSVSVAPAELEAAFEEGIGFDGS 54
                  6688999**************************************9643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.52
# Mc/sec: 2604.07
//
Query:       KIR60760.1  [L=141]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-32  109.5  11.0    7.2e-17   61.3   0.7    2.1  2  DUF350    Domain of Unknown Function (DUF350)


Domain annotation for each model (and alignments):
>> DUF350  Domain of Unknown Function (DUF350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   3.7   1.5e-18   2.7e-14       1      54 []      15      69 ..      15      69 .. 0.98
   2 !   61.3   0.7     4e-21   7.2e-17       1      54 []      86     140 ..      86     140 .. 0.99

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 1.5e-18
      DUF350  1 YgvvGivllllgffvfdllTpgklgelIkqgnn.AaaivlagviiglaiivaaAi 54
                +gvvG+ l+++gf ++dllTpg+l+elI+ ++n +a+++la+  +g+a iv  Ai
  KIR60760.1 15 FGVVGVGLMAAGFGLVDLLTPGRLRELIWVRRNaNAGLLLAANQLGIAGIVFTAI 69
                79*************************************************9998 PP

  == domain 2  score: 61.3 bits;  conditional E-value: 4e-21
      DUF350   1 YgvvGivllllgffvfdllTpgklgelIkqgnn.AaaivlagviiglaiivaaAi 54 
                 +g++G+++++l+ffv+dllTpg+lge+I  +++ +aa v+a++++g a+iv a+i
  KIR60760.1  86 FGLIGLLIMALAFFVLDLLTPGRLGEIICSDEPhPAARVSAATHFGAALIVCACI 140
                 79****************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 1011.46
//
Query:       KIR60761.1  [L=230]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-14   54.9   0.0    1.5e-14   54.4   0.0    1.2  1  WYL       WYL domain
    3.4e-11   42.9   0.0    6.5e-11   42.0   0.0    1.5  1  HTH_11    HTH domain
     0.0084   16.4   0.0      0.024   15.0   0.0    1.7  1  Rrf2      Transcriptional regulator
  ------ inclusion threshold ------
      0.028   14.2   0.0      0.061   13.1   0.0    1.5  1  HTH_DeoR  DeoR-like helix-turn-helix domain
       0.14   11.5   0.4       0.19   11.0   0.4    1.1  1  Lipase    Lipase


Domain annotation for each model (and alignments):
>> WYL  WYL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   4.3e-18   1.5e-14       5      77 ..     139     211 ..     135     227 .. 0.87

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 4.3e-18
         WYL   5 tlaeAieerrrvefrYrspagegeertvePyglvlkngrwYLvaydekrdeirtfrldRiselelldetfepp 77 
                  +a A+   r++++ Y ++ag ++ertveP+g   +  +wYL+a+++ rd +r frldRi ++++l e+ +++
  KIR60761.1 139 AVAGAVTAARVLRIGYADRAGVATERTVEPVGFLGNPWHWYLLAWCRLRDGPRAFRLDRIASVTVLAEPVTRE 211
                 6899**************666666********************************************98855 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   1.8e-14   6.5e-11       1      54 [.       6      62 ..       6      63 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 1.8e-14
      HTH_11  1 RllqilelLleargp.isgeeLAeeLnvSrrtvrrdIkaLeelgvpIesepgr..GY 54
                Rl +++e L++  +   s+  LA +++vS rt+ rdI+aL+ +gvpI +epgr  GY
  KIR60761.1  6 RLYALVEELRAVSPRpRSARWLAGRFEVSSRTIERDIAALQQAGVPIWAEPGRtgGY 62
                7788999999999999**************************************999 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.8e-06     0.024      25      69 ..      21      66 ..       7      70 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.8e-06
                -B-HHHHHHHHTS-HHHHHHHHHHHHHTTS.EEEETTT-TCEEESS CS
        Rrf2 25 pvsseeiaerqnispsylekilakLrkagl.vksvrGkgGGyrLak 69
                p s++ +a r+++s + +e+ +a L++ag+ + ++ G+ GGy+  +
  KIR60761.1 21 PRSARWLAGRFEVSSRTIERDIAALQQAGVpIWAEPGRTGGYVVDR 66
                468899***********************98***********9876 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.7e-05     0.061      20      43 ..      27      50 ..      23      54 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.7e-05
    HTH_DeoR 20 lvellgvSeaTiRRDLneLeeqgl 43
                l+ +++vS  Ti RD++ L+++g+
  KIR60761.1 27 LAGRFEVSSRTIERDIAALQQAGV 50
                6789*****************997 PP

>> Lipase  Lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   5.2e-05      0.19     147     192 ..     123     169 ..     115     172 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.2e-05
                 GGEEEEEETCHHHH.HHHHHHCTTT.SSEEEEES-B-TTTTTS-TTT CS
      Lipase 147 envhliGsslgaHv.aGvaGrrlkgklgRITgLDpaepyfegteeee 192
                   vhl+G +++a v a+vaG  +  ++ RI   D a++  e+t e +
  KIR60761.1 123 GRVHLVGGGPAAPVpAAVAGAVTAARVLRIGYADRAGVATERTVEPV 169
                 57**********99789********************9999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1626.14
//
Query:       KIR60762.1  [L=125]
Description: glyoxalase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-09   36.8   0.3    9.4e-09   36.0   0.3    1.4  1  Glyoxalase_6  Glyoxalase-like domain
    4.3e-07   30.2   0.0    6.6e-07   29.6   0.0    1.3  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge


Domain annotation for each model (and alignments):
>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.3   1.1e-12   9.4e-09       4     106 ..      12     118 ..       9     119 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 1.1e-12
  Glyoxalase_6   4 ldaadpaalaaFwaaalgweveree.....aaledpegvgpaaedaatllfqrvpepaknrvHldlavedldaevarlvalGArvlreprdgthgr. 94 
                   + ++ p+++ +F+ +++gwe +++      +      ++g a++++   +++  + +  n   +  +v+d++ +v+r++ +G+rvl +      g  
    KIR60762.1  12 IGTDRPDEAERFYGELFGWEFAEQGapgrsY----RVTGGGAGGEGIGGAIRASDGSTPNYAIFYAQVADVADAVRRAETAGGRVLVPTFTAPSGLt 104
                   56899*******************9764431....2223334667778888888888788899999********************99999877668 PP

  Glyoxalase_6  95 ..vlaDPeGneFcv 106
                      l DP+Gn F v
    KIR60762.1 105 faHLLDPSGNHFGV 118
                   999*********87 PP

>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   7.3e-11   6.6e-07       2     126 ..       7     116 ..       6     118 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 7.3e-11
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGE CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvk 100
                 i ++ + ++ ++++ +FY + +G++  ++     ++ + r + + agg  i+ +++ ++++ ++            a ++  v dv++a++r++ ag++
  KIR60762.1   7 ITWFEIGTDRPDEAERFYGELFGWEFAEQGA---PGRSYRVTGGGAGGEGIGGAIRASDGSTPNY-----------AIFYAQVADVADAVRRAETAGGR 91 
                 56678999***********************...7777777777777777777777666665555...........699999***************** PP

                 EEEEEECHHCTEEEEEEEEETTSEEE CS
  Glyoxalase 101 vvaepgrhyfgalysfyfrDpdGill 126
                 v  +  + + g  + ++  Dp+G+ +
  KIR60762.1  92 VLVPTFTAPSGLTF-AHLLDPSGNHF 116
                 *9997777777776.56******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 955.99
//
Query:       KIR60763.1  [L=163]
Description: hypothetical protein TK50_23150 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00045   19.7   0.4    0.00055   19.4   0.4    1.0  1  Not3            Not1 N-terminal domain, CCR4-Not complex comp
     0.0017   18.1   0.2       0.67    9.8   0.1    2.7  2  HTH_10          HTH DNA binding domain
     0.0031   17.5   0.3      0.008   16.2   0.3    1.7  1  DUF2680         Protein of unknown function (DUF2680)
     0.0097   15.8   3.1      0.012   15.5   3.1    1.1  1  Sigma70_ner     Sigma-70, non-essential region
  ------ inclusion threshold ------
      0.019   15.0   0.0      0.029   14.4   0.0    1.3  1  Phage_XkdX      Phage uncharacterised protein (Phage_XkdX)
      0.026   14.6   0.7      0.076   13.1   0.7    1.8  1  DUF1707         Domain of unknown function (DUF1707)
      0.045   11.8   0.8      0.053   11.6   0.8    1.0  1  DUF2126         Putative amidoligase enzyme (DUF2126)
      0.067   13.8   2.7       0.13   12.9   0.0    2.1  2  U1snRNP70_N     U1 small nuclear ribonucleoprotein of 70kDa M
      0.086   13.4   0.3        0.2   12.2   0.3    1.6  1  Arg_decarbox_C  Arginine decarboxylase C-terminal helical ext
       0.13   11.8   6.4        0.4   10.2   6.4    1.6  1  Mu-like_Pro     Mu-like prophage I protein
       0.19   10.2   0.6       0.27    9.7   0.6    1.2  1  FUSC            Fusaric acid resistance protein family
       0.27   11.1   4.3        7.5    6.4   0.2    2.1  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
       0.62    9.9   0.1       0.62    9.9   0.1    2.7  3  N36             36-mer N-terminal peptide of the N protein (N
       0.99    7.7   5.3        1.2    7.4   5.3    1.0  1  DUF3292         Protein of unknown function (DUF3292)
        2.6    8.3   5.8        4.8    7.4   0.4    2.2  2  FliE            Flagellar hook-basal body complex protein Fli


Domain annotation for each model (and alignments):
>> Not3  Not1 N-terminal domain, CCR4-Not complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.4   4.6e-07   0.00055     109     208 ..      43     140 ..      25     143 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.6e-07
        Not3 109 aaaekldpkekekeearewlkdaideLneqvekleaeieklsskkkkkkkskekarveeleklierhkfhieklelllrlleneelepeevekikedie 207
                 +++e++d +ek++e+ +e+ +   +eL  +++k++a +ek+++++k ++ ++   +v e  ++ +  +   +  e l +++++++l++e+ ++i+ ++e
  KIR60763.1  43 SSSEHTDRQEKRAERQSEFAEALAKELGVSTDKVTAALEKVREQHKADRPERG--KVGERGERPDAAERQAALKERLAQAVKDGKLTQEQADAITKAVE 139
                 34456699*********************************998877764443..66666666666666666667788899999999999999999887 PP

        Not3 208 y 208
                  
  KIR60763.1 140 A 140
                 5 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   0.00056      0.67      26      48 ..      62      84 ..      57      86 .. 0.88
   2 ?    5.5   0.0     0.012        15       1      18 [.     126     143 ..     126     144 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00056
      HTH_10 26 lkeLAkelGIskstlsehLrkae 48
                +++LAkelG+s   ++  L+k+ 
  KIR60763.1 62 AEALAKELGVSTDKVTAALEKVR 84
                578************99999875 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.012
      HTH_10   1 LTdkqlevlklAyemGYF 18 
                 LT  q  ++++A+e+G F
  KIR60763.1 126 LTQEQADAITKAVEAGVF 143
                 9**************966 PP

>> DUF2680  Protein of unknown function (DUF2680)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.3   6.7e-06     0.008      28      47 ..     121     140 ..     110     142 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.7e-06
     DUF2680  28 VeaGllTkeqgekikkniDk 47 
                 V+ G+lT+eq+++i+k +++
  KIR60763.1 121 VKDGKLTQEQADAITKAVEA 140
                 899*************9997 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   3.1     1e-05     0.012      39     130 ..      42     139 ..      22     142 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1e-05
  Sigma70_ner  39 eeeeedeeeeeeeedddeeeseseaadeeelkeealekfeelreqyeklrk....alkkkgr..kskkyekareelseefkefrLtpkqidrLveqlr 130
                  ++++e ++++e+  + ++e +e++a++++   +++ + +e++req++  r     + ++ +r  + ++ ++++e l++ +k  +Lt++q d++++ + 
   KIR60763.1  42 ASSSEHTDRQEKRAERQSEFAEALAKELGVSTDKVTAALEKVREQHKADRPergkVGERGERpdAAERQAALKERLAQAVKDGKLTQEQADAITKAVE 139
                  33333344444444444678999***********************9988855542222222224455556666779999999********9998765 PP

>> Phage_XkdX  Phage uncharacterised protein (Phage_XkdX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.4e-05     0.029      15      37 ..     114     136 ..     108     138 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.4e-05
  Phage_XkdX  15 keqvrdaVgkgkITkeeYeeITG 37 
                 ke++++aV+ gk+T+e+   IT 
  KIR60763.1 114 KERLAQAVKDGKLTQEQADAITK 136
                 99*******************95 PP

>> DUF1707  Domain of unknown function (DUF1707)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   6.4e-05     0.076       5      36 ..     106     138 ..     103     142 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.4e-05
     DUF1707   5 dadRerav.elLrealaeGrLtldEfdeRleaa 36 
                  a+R++a+ e+L++a+ +G Lt +  d  ++a+
  KIR60763.1 106 AAERQAALkERLAQAVKDGKLTQEQADAITKAV 138
                 69***999569************9988766655 PP

>> DUF2126  Putative amidoligase enzyme (DUF2126)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.8   4.4e-05     0.053     139     214 ..      46     121 ..      34     134 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.4e-05
     DUF2126 139 dekkekkataeeaekflealaeklgldeklvlpayeDalayllkeaklpanvdpldaklkdeeerarlakvlekgl 214
                 +++++++++ae+ ++f+eala++lg++++ v++a e + ++ ++++    +v    ++ + +e++a l++ l + +
  KIR60763.1  46 EHTDRQEKRAERQSEFAEALAKELGVSTDKVTAALEKVREQHKADRPERGKVGERGERPDAAERQAALKERLAQAV 121
                 344556667778899*********************9999888777666666665555555555555555555544 PP

>> U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00011      0.13      38      85 ..      23      69 ..       5      71 .. 0.89
   2 ?    0.1   1.6       1.1   1.3e+03      39      86 ..      76     122 ..      72     130 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
  U1snRNP70_N 38 Gvaaflselkedeeeqeppektetkeekkererkekkekkeekleeal 85
                 G+aa   +++ +e ++++p+ + ++++ ++++r+e++ + +e l+++l
   KIR60763.1 23 GIAAPTIAFA-EEGTTPSPSASSSEHTDRQEKRAERQSEFAEALAKEL 69
                 6777777786.5799999999******************999999876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.1
  U1snRNP70_N  39 vaaflselkedeeeqeppektetkeekkererkekkekkeekleeale 86 
                  v a l++++e +++++ pe+ +  e  +  +++e++++ +e+l++a++
   KIR60763.1  76 VTAALEKVRE-QHKADRPERGKVGERGERPDAAERQAALKERLAQAVK 122
                  5566777764.4555555556666666666677777777777776665 PP

>> Arg_decarbox_C  Arginine decarboxylase C-terminal helical extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   0.00017       0.2      17      44 ..     111     141 ..     105     142 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00017
  Arg_decarbox_C  17 erlrrqveaa...grLtpeerqalleeleag 44 
                      +l++++++a   g+Lt+e++ a+ ++ eag
      KIR60763.1 111 AALKERLAQAvkdGKLTQEQADAITKAVEAG 141
                     56777777777779***********999987 PP

>> Mu-like_Pro  Mu-like prophage I protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.4   0.00034       0.4     131     217 ..      42     122 ..      36     142 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00034
  Mu-like_Pro 131 alaaateqeeekekeeekellkkllaaLgleedateeqilaalkalkeek.aavaealglkagaktaeasaevaaLsakavDlakyvp 217
                  a+++++++ +ek  e+++e++++l++ Lg+++d+    ++aal+++ e++ a+  e  ++ +  +  +a+++ aaL+     la+ v+
   KIR60763.1  42 ASSSEHTDRQEKRAERQSEFAEALAKELGVSTDK----VTAALEKVREQHkADRPERGKVGERGERPDAAERQAALKE---RLAQAVK 122
                  456666666666767778*************877....9999999999985445555666666667777777777722...2233332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.6   0.00023      0.27     243     329 ..      48     139 ..      36     158 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00023
        FUSC 243 arlraeeaaavpe.laallaelaaleaaaaaealeaalaalrarlralrrale.........adadtaalllarlaellaelaqllaslraleaaia 329
                  + ++++a+++ e  +al +el       ++++ +aal+ +r++ +a+r+++          ++a+++a+l +rla+ +++   ++++ +a ++a +
  KIR60763.1  48 TDRQEKRAERQSEfAEALAKELGV-----STDKVTAALEKVREQHKADRPERGkvgergerpDAAERQAALKERLAQAVKDGKLTQEQADAITKAVE 139
                 334444444444456677777777.....78889999999999999999999899999889899999999999999999999999999888887766 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2    0.0063       7.5       7      71 ..      17      87 ..      12      95 .. 0.76
   2 ?    6.3   0.6    0.0065       7.8      35      68 ..     106     139 ..      96     141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0063
                -SCCHHHHHH...HHHHTT-EEEEE-S-HHHHHHHHHHHHH...HHHCCTTTTSS-HHHHCCCHHCEEEES CS
     3HCDH_N  7 aGtmGagiaa...vfasagleVvlvdiseealekalekiek...sleklvekgklkeeeveaalarisftt 71
                aG++G giaa   +fa++g +      s+e  ++ ++++e+     e l+++  +++++v aal++++ + 
  KIR60763.1 17 AGVLGVGIAAptiAFAEEGTTPSPSASSSEHTDRQEKRAERqseFAEALAKELGVSTDKVTAALEKVREQH 87
                79999999864447899999988888888877777777776443567778888889999999999998655 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0065
                 HHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEE CS
     3HCDH_N  35 lekalekieksleklvekgklkeeeveaalaris 68 
                 +++ +++++++l+++v++gkl++e+++a+ + ++
  KIR60763.1 106 AAERQAALKERLAQAVKDGKLTQEQADAITKAVE 139
                 45567889999****************9998875 PP

>> N36  36-mer N-terminal peptide of the N protein (N36)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.3       2.9   3.5e+03      19      29 ..      16      26 ..      11      29 .. 0.77
   2 ?    9.9   0.1   0.00052      0.62       4      29 ..      48      73 ..      46      77 .. 0.80
   3 ?   -1.2   0.8       1.6   1.9e+03      10      18 ..     106     114 ..      99     116 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.9
                CTSCCGCCSS- CS
         N36 19 AAnPLLvGvsA 29
                AA  L vG++A
  KIR60763.1 16 AAGVLGVGIAA 26
                77778899987 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00052
                HHHHHHTHHHHHHHHCTSCCGCCSS- CS
         N36  4 tRRRERRAEKqAqWKAAnPLLvGvsA 29
                t R E+RAE+q  +  A     Gvs 
  KIR60763.1 48 TDRQEKRAERQSEFAEALAKELGVST 73
                88*********998877777777775 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.6
                 THHHHHHHH CS
         N36  10 RAEKqAqWK 18 
                  AE+qA  K
  KIR60763.1 106 AAERQAALK 114
                 599999765 PP

>> DUF3292  Protein of unknown function (DUF3292)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.3     0.001       1.2     400     503 ..      32     133 ..      26     142 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.001
     DUF3292 400 GEankaPlPpppsskekppekpaelkdeelraeagedepldaseeeleeaiepdeekakekeeekeeekekkkkkkkgskilgllkgttkggvk.tala 497
                 +E+  +P P++ ss++++ +++ + +++e  ++    ++l++s++++++a+e+ +e++k+++ e+ +  e+ ++    ++  + lk+  +++vk ++l+
  KIR60763.1  32 AEEGTTPSPSASSSEHTDRQEKRAERQSEFAEALA--KELGVSTDKVTAALEKVREQHKADRPERGKVGERGERPDAAERQ-AALKERLAQAVKdGKLT 127
                 68888999999999777777665544444444344..46************999998888777733333333333333332.22333333333213333 PP

     DUF3292 498 vdkvka 503
                  +++ a
  KIR60763.1 128 QEQADA 133
                 333333 PP

>> FliE  Flagellar hook-basal body complex protein FliE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.7     0.053        63       5      35 ..      46      80 ..      41      99 .. 0.61
   2 ?    7.4   0.4     0.004       4.8      12      48 ..     105     141 ..      94     143 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.053
        FliE  5 aassakaaaaasaesFasvLksa....leevnetq 35
                ++++++++ a+ +++Fa++L +      ++v ++ 
  KIR60763.1 46 EHTDRQEKRAERQSEFAEALAKElgvsTDKVTAAL 80
                44455556666666999999998333334444433 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.004
        FliE  12 aaaasaesFasvLksaleevnetqkeaeelaeafalG 48 
                 +aa+ ++  ++ L +a+++ + tq++a++ ++a+++G
  KIR60763.1 105 DAAERQAALKERLAQAVKDGKLTQEQADAITKAVEAG 141
                 455566699************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1834  (0.102292); expected 358.6 (0.02)
Passed bias filter:                     1060  (0.0591221); expected 358.6 (0.02)
Passed Vit filter:                       123  (0.00686039); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 1105.51
//
Query:       KIR60764.1  [L=294]
Description: virginiamycin B lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-11   42.9   6.4     0.0082   15.7   0.2    4.8  5  SGL       SMP-30/Gluconolactonase/LRE-like region
  ------ inclusion threshold ------
      0.069   13.3   0.4         35    4.6   0.0    3.9  4  DUF2255   Uncharacterized protein conserved in bacteria (DUF2
       0.46   10.6   9.3        2.9    8.1   0.0    4.9  5  NHL       NHL repeat


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.2   1.4e-05     0.085     186     242 ..      18      72 ..       6      76 .. 0.83
   2 ?    0.9   0.0     0.047   2.8e+02      93     108 ..      64      79 ..      53      89 .. 0.78
   3 !   15.7   0.2   1.4e-06    0.0082     178     243 ..      93     156 ..      77     159 .. 0.80
   4 !    7.2   0.0   0.00057       3.4      11      37 ..     192     217 ..     181     226 .. 0.65
   5 !    7.1   0.1   0.00062       3.7     187     224 ..     227     263 ..     219     272 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.4e-05
         SGL 186 pDGlavDaeGnvwvAvwgggkvvrfdpdGklieeiklpakrvtscaFgGpdlrtLyi 242
                 p G+a   +G +w++++++g+++r++ dG++  +   pa+r+  ++ +Gpd   L+ 
  KIR60764.1  18 PYGIAAGPDGALWATLVRSGGIARVSADGTVRVHPGDPASRPLVVT-AGPD-GALWF 72 
                 66999999**********************9999988988988888.6777.56665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.047
         SGL  93 vdpdGrlwfGtmgdee 108
                 + pdG+lwf+  gd++
  KIR60764.1  64 AGPDGALWFTRSGDDR 79 
                 5689999999888876 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 1.4e-06
         SGL 178 dlkkgegepDGlavDaeGnvwvAvwgggkvvrfdpdGklieeiklpak..rvtscaFgGpdlrtLyit 243
                  l+ g+g p G+a   +G +w A +++++v r+d dG+ ++ + lp++   +++++ +Gpd + L+ t
  KIR60764.1  93 ALPAGTG-PGGIAAGPDGALWYAGMSNDTVGRVDVDGTHTA-YPLPVAggFPSMIT-AGPD-EALWFT 156
                 4555555.99***************************9776.****6665666666.7898.677766 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.00057
         SGL  11 egaLlwvDilgqrihrldpatgketvl 37 
                 +gaL++v+i +++++r++ +++ e+ +
  KIR60764.1 192 DGALWFVEIAAGQLCRITTDGRIEE-F 217
                 5677777777777777777776665.3 PP

  == domain 5  score: 7.1 bits;  conditional E-value: 0.00062
         SGL 187 DGlavDaeGnvwvAvwgggkvvrfdpdGklieeiklpa 224
                   ++ D  G+ w + w+++++ +++ +G+ i++++lp+
  KIR60764.1 227 HAIVADPAGGCWFTEWAANRIGHVTAAGR-IDAYDLPT 263
                 5678899*********************8.67799995 PP

>> DUF2255  Uncharacterized protein conserved in bacteria (DUF2255)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0059        35      47      74 ..      69      96 ..      60     105 .. 0.84
   2 ?    1.0   0.0     0.075   4.5e+02      47      67 ..     110     130 ..     103     133 .. 0.84
   3 ?   -0.0   0.0      0.16   9.5e+02      46      66 ..     151     171 ..     146     174 .. 0.85
   4 ?    1.4   0.1     0.057   3.4e+02      47      66 ..     236     255 ..     231     261 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0059
     DUF2255 47 skWyraalaqkagriraggvekdVtfee 74
                + W+ +    + gri+ +g  + V++ +
  KIR60764.1 69 ALWFTRSGDDRLGRITTAGAATSVALPA 96
                46********************999865 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.075
     DUF2255  47 skWyraalaqkagriraggve 67 
                 + Wy    +   gr+ ++g++
  KIR60764.1 110 ALWYAGMSNDTVGRVDVDGTH 130
                 45***************9986 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.16
     DUF2255  46 askWyraalaqkagriraggv 66 
                 ++ W+   +a+  gri+ +g 
  KIR60764.1 151 EALWFTLNQANAVGRIACDGE 171
                 567*************99986 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.057
     DUF2255  47 skWyraalaqkagriraggv 66 
                 + W+ +  a++ g+++a+g 
  KIR60764.1 236 GCWFTEWAANRIGHVTAAGR 255
                 67**************9985 PP

>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.056   3.3e+02       2      16 ..      16      30 ..      16      32 .. 0.87
   2 ?    1.9   0.1     0.046   2.8e+02       3      16 ..      99     112 ..      98     112 .. 0.88
   3 ?   -0.3   0.1      0.22   1.3e+03       3      16 ..     183     196 ..     182     196 .. 0.84
   4 ?   -0.3   0.1      0.22   1.3e+03       3      13 ..     225     235 ..     224     236 .. 0.81
   5 ?    8.1   0.0   0.00048       2.9       3      15 ..     267     279 ..     266     279 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.056
                SSEEEEEEETTTEEE CS
         NHL  2 nyPhGvavdsnGdiy 16
                + P G+a+ ++G ++
  KIR60764.1 16 CGPYGIAAGPDGALW 30
                7899********998 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.046
                 SEEEEEEETTTEEE CS
         NHL   3 yPhGvavdsnGdiy 16 
                  P G+a+ ++G ++
  KIR60764.1  99 GPGGIAAGPDGALW 112
                 699********876 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.22
                 SEEEEEEETTTEEE CS
         NHL   3 yPhGvavdsnGdiy 16 
                  P G+++  +G ++
  KIR60764.1 183 GPVGITLGVDGALW 196
                 69*****9999776 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.22
                 SEEEEEEETTT CS
         NHL   3 yPhGvavdsnG 13 
                 +Ph +++d+ G
  KIR60764.1 225 RPHAIVADPAG 235
                 79999999776 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.00048
                 SEEEEEEETTTEE CS
         NHL   3 yPhGvavdsnGdi 15 
                 +PhG+av+++G +
  KIR60764.1 267 EPHGLAVLPDGTV 279
                 7*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2157.90
//
Query:       KIR60765.1  [L=1039]
Description: bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-88  294.0  15.4    2.4e-40  138.5   0.8    3.6  3  GlnE           Glutamate-ammonia ligase adenylyltransferase
    3.6e-58  195.8   1.8    7.1e-37  126.7   0.1    2.7  2  GlnD_UR_UTase  GlnD PII-uridylyltransferase
    4.4e-07   29.8   0.1     0.0096   15.7   0.0    2.5  2  DUF294         Putative nucleotidyltransferase DUF294
    0.00019   21.2   0.2       0.31   10.8   0.0    2.7  2  DUF294_C       Putative nucleotidyltransferase substrate bind


Domain annotation for each model (and alignments):
>> GlnE  Glutamate-ammonia ligase adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   0.8   9.9e-44   4.4e-40       3     247 ..     109     327 ..     107     331 .. 0.93
   2 !   26.1   1.2   1.1e-09   4.9e-06       3      83 ..     601     681 ..     599     685 .. 0.85
   3 !  138.5   0.8   5.4e-44   2.4e-40      78     250 ..     714     875 ..     711     876 .. 0.93

  Alignments for each domain:
  == domain 1  score: 137.7 bits;  conditional E-value: 9.9e-44
                 HHHHHHHH-HHHHHHHHH-CHHHHHHCHCHHHTSGGGCCCHHHHHHHHTTTS-TCHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHH CS
        GlnE   3 qlaevlaaSpfvaellarrprlldelldkellaepkeleaaaaelaealaavedeeqliealRqfkreellriavadllglltveevsraLseLaeavi 101
                 +l++vl+aS+ + + l  +p+    l+     + + ++++ + +la+a a+++  +q +++lRq  r +llria+adl+g   +e+++ aLs+La+a++
  KIR60765.1 109 RLVAVLGASSALGDHLVANPHQWPVLATD--PDGLAPAAEGRLDLAAA-ARLTPSTQPVAVLRQAYRLALLRIAAADLTGGRALEQTMAALSALADATL 204
                 799********************999999..89999999999999977.999999******************************************** PP

                 HHHHHHHHHHHHHHCTSCCCCTTCC-SEEEEE-HHHHTT---TT--EEEEEEE---TT-BSSSS-SBHHHHHHHHHHHHHHHHH--BTTB-S--EE-TT CS
        GlnE 102 eaaldlllrqvvaelgtpvdekgepqqllvlGmGklGgaELnysSDiDliflydedaeteggkksidaakfftrlaqrlisiLsartadGvlYevDlrL 200
                  aa+d+++ ++ +  ++         +l+v++mGk Gg ELny SD+D+if+++ed+e             +t +a rli++        v + vD+ L
  KIR60765.1 205 AAAYDIAVGELPEGTAV--------PRLAVVAMGKCGGGELNYVSDVDVIFVCAEDDEL----------PAATTIATRLIHVCGL-----VAWPVDAAL 280
                 ********999887433........37*****************************999..........557899*****99754.....55899**** PP

                 STTGGGS-SEEEHHHHHHHHHHC--HHHHHHHCT-EECCE-HCHHHH CS
        GlnE 201 RPsGesGplvlsvaAfekYyeeeartWErqAlirArvvagdaelkaa 247
                 RP+G+ Gplv+++a+  +Yy+++artWE qAl++Ar  agd +l+++
  KIR60765.1 281 RPEGSRGPLVRTLASHLAYYRRWARTWEFQALLKARPAAGDLALCQE 327
                 *****************************************999876 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 1.1e-09
                 HHHHHHHH-HHHHHHHHH-CHHHHHHCHCHHHTSGGGCCCHHHHHHHHTTTS-TC.HHHHHHHHHHHHHHHHHHHHHHHTTS CS
        GlnE   3 qlaevlaaSpfvaellarrprlldelldkellaepkeleaaaaelaealaavede.eqliealRqfkreellriavadllgl 83 
                 +la+vl+ S++ a+llar+p++l  l+++    +p++ + + +  a+a a+ + +  ++ +a+R ++r+el+ria+ad+l  
  KIR60765.1 601 RLARVLSSSRYAADLLAREPEALRLLAEE-NELTPRPRAVLCEGFAAAAARHAADpVEATRAVRALRRRELVRIACADMLSR 681
                 89*********************877777.5666777777777777777777777799********************9875 PP

  == domain 3  score: 138.5 bits;  conditional E-value: 5.4e-44
                 HHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSCCCCTTCC-SEEEEE-HHHHTT---TT--EEEEEEE---TT-BSSSS-SBHHHHHHHH CS
        GlnE  78 adllglltveevsraLseLaeavieaaldlllrqvvaelgtpvdekgepqqllvlGmGklGgaELnysSDiDliflydedaeteggkksidaakfftrl 176
                 +  lgl++v+ v  aLs++ +a++ aal ++ ++ +a+ + p        +++v+GmG+lGg E ny SD+D++f+yd++a +    ++ +a++ + ++
  KIR60765.1 714 RAALGLADVTAVGTALSDVTDATLAAALRAARAARAAQPALPG------LRFAVIGMGRLGGYESNYLSDADVLFVYDPPAGA----DEGAASAAAHAV 802
                 66799*************************9999888865555......59******************************88....666677777889 PP

                 HHHHHHHHH--BTTB-S--EE-TTSTTGGGS-SEEEHHHHHHHHHHC--HHHHHHHCT-EECCE-HCHHHHHHH CS
        GlnE 177 aqrlisiLsartadGvlYevDlrLRPsGesGplvlsvaAfekYyeeeartWErqAlirArvvagdaelkaafle 250
                 a+ l+++Lsa+  d+ l  vD+ LRP+G++Gplv+s+aA+++Yy ++ + WE qAl+rAr+v+gda+l+a+f++
  KIR60765.1 803 AEELRRLLSAPAPDPAL-GVDADLRPEGRQGPLVRSLAAYAQYYARWSKVWEAQALLRARFVCGDADLGAEFEA 875
                 *****************.*****************************************************986 PP

>> GlnD_UR_UTase  GlnD PII-uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.1   1.6e-40   7.1e-37       1     146 []     350     495 ..     350     495 .. 0.94
   2 !   67.9   0.2   2.1e-22   9.5e-19       2     141 ..     897    1032 ..     896    1037 .. 0.92

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 1.6e-40
  GlnD_UR_UTase   1 rfmkakieeekarrgrsdtllepniKlGpGGlRdiefivqvlqlirGgrdpelrerstlealeelvergllteeeakelreayrflrrlehrLqll 96 
                    r+m++ki ++   ++  +     +iK GpGGlRdief vq+lql++G+ d+ lr++ t+ al++lv+ g++ +++ ++l + yrflr +ehrLql+
     KIR60765.1 350 RSMRRKIIDNIPPKELDR-----EIKRGPGGLRDIEFAVQLLQLVHGRGDETLRVPGTIPALRALVAGGYVGRADGEALLRGYRFLRGVEHRLQLQ 440
                    679999999999999999.....************************************************************************* PP

  GlnD_UR_UTase  97 adrqthrLpfdeeeqrrlaealgy.....redkaa...fmkelfqhaerVrrlfekll 146
                      r+th+ p+++++ r+la+algy     r+   a   f++e+ +ha++Vrrl++kll
     KIR60765.1 441 GLRRTHTVPTEPAALRWLAAALGYvatrgRS---AveeFRAEWVTHATEVRRLHAKLL 495
                    ************************9954444...4556****************9985 PP

  == domain 2  score: 67.9 bits;  conditional E-value: 2.1e-22
  GlnD_UR_UTase    2 fmkakieeekarrgrsdtllepniKlGpGGlRdiefivqvlqlirGgrdpelrerstlealeelvergllteeeakelreayrflrrlehrLql 95  
                      +ka++e+e+  rg          KlG+GGl d+e  vq++ql + gr pelr ++tl+al++++ +gl+++++a ++++ ++   +++++L l
     KIR60765.1  897 RIKARVETERLPRGADP---ATHTKLGRGGLADVEWAVQLVQLRHAGRLPELRGTRTLDALAAAAGAGLVDPADATAMAAGWTLAAQVRNALML 987 
                     67888888888777777...6699********************************************************************** PP

  GlnD_UR_UTase   96 ladrqthrLpfdeeeqrrlaealgyredkaafmkelfqhaerVrrl 141 
                     +++r+ ++Lp    e + +++ lg  +d  +f++e+ ++ +r r+ 
     KIR60765.1  988 VRGRSGDQLPRHGVELAGVVRLLGR-DDPGEFLDEYLRTGRRSRAA 1032
                     ************************8.99999*****9988776665 PP

>> DUF294  Putative nucleotidyltransferase DUF294
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   5.2e-05      0.23       8      94 ..     180     265 ..     174     273 .. 0.84
   2 !   15.7   0.0   2.1e-06    0.0096      16      97 ..     721     809 ..     714     815 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.2e-05
      DUF294   8 rallaegvkaealarlvselndallrrlielaeeelgk..ppvpfallvmGSeGReEqtlktDqDnalvledeeeeaareyfaelaerv 94 
                 +a l+ g+  e+ ++++s+l da+l  + ++a+ el +  +  + a+++mG  G +E  + +D D  +v ++   +++ +   ++a+r+
  KIR60765.1 180 AADLTGGRALEQTMAALSALADATLAAAYDIAVGELPEgtAVPRLAVVAMGKCGGGELNYVSDVDVIFVCAE---DDELPAATTIATRL 265
                 5556788999*************************988756889**************************99...55555555555554 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 2.1e-06
      DUF294  16 kaealarlvselndallrrlielaeeelgk....ppvpfallvmGSeGReEqtlktDqDnalvled...eeeeaareyfaelaervnea 97 
                 +++a+++++s+++da+l  +++ a +  +     p  +fa++ mG  G  E  + +D D  +v++    ++e+aa++  +++ae++ + 
  KIR60765.1 721 DVTAVGTALSDVTDATLAAALRAARAARAAqpalPGLRFAVIGMGRLGGYESNYLSDADVLFVYDPpagADEGAASAAAHAVAEELRRL 809
                 6788899999999999988888887775556677899*****************************66555555556666666655554 PP

>> DUF294_C  Putative nucleotidyltransferase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   6.8e-05      0.31      60     108 ..     398     446 ..     371     458 .. 0.82
   2 !    7.5   0.1   0.00075       3.3      59     107 ..     945     993 ..     919    1004 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.8e-05
    DUF294_C  60 eatnTleRlkalaeagvlsaelaedlleayefllrlrlrhqleaieage 108
                 +  +T+  l+al++ g + +++ e+ll++y+fl ++  r ql+ +++ +
  KIR60765.1 398 RVPGTIPALRALVAGGYVGRADGEALLRGYRFLRGVEHRLQLQGLRRTH 446
                 44589999*********************************99886544 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00075
    DUF294_C  59 ieatnTleRlkalaeagvlsaelaedlleayefllrlrlrhqleaieag 107
                 ++ t Tl+ l a+a ag +++++a++++ ++ + +++r    l + ++g
  KIR60765.1 945 LRGTRTLDALAAAAGAGLVDPADATAMAAGWTLAAQVRNALMLVRGRSG 993
                 6789*********************************988877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1039 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 7190.14
//
Query:       KIR60766.1  [L=528]
Description: hypothetical protein TK50_23175 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3454.55
//
Query:       KIR60767.1  [L=477]
Description: hypothetical protein TK50_23180 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-06   25.6  45.7    8.6e-06   25.6  45.7    4.1  4  GT87      Glycosyltransferase family 87
  ------ inclusion threshold ------
      0.075   13.1   0.6        3.9    7.6   0.0    3.1  2  DUF5316   Family of unknown function (DUF5316)


Domain annotation for each model (and alignments):
>> GT87  Glycosyltransferase family 87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   5.4    0.0012        11     192     236 ..      46      91 ..       2      98 .. 0.67
   2 !   25.6  45.7   9.5e-10   8.6e-06      15     237 ..     161     388 ..     142     390 .. 0.67
   3 ?   -0.4   9.6     0.088   7.9e+02     102     149 ..     379     429 ..     374     443 .. 0.84
   4 ?   -0.7   1.0      0.11   9.6e+02      30      47 ..     445     461 ..     440     473 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0012
        GT87 192 avtllwlvlvllvvalaavaawrlrrrerllalaaallvall.alL 236
                 + + l l+ +l++ al+a+a+w lr+  + +++a+++++  l  lL
  KIR60767.1  46 PHGPLILASWLVGTALMAWAWWSLRNAVPSARWALVTVGLWLlPLL 91 
                 3455556666666888888888888888888887555544433344 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 9.5e-10
        GT87  15 allpyglalalwallnlaalllalrlllrrlgralasavalalllaalalepvlstlgfGqinlllll.lvlldllllr..rrrpl...laGlliGlaa 107
                 +l    +a++l+a++ + +++++l +l+rr+g+   + +al+l   ala++ +  +l+ G  n  l++ l++++l+ +    +rp+   + G+l+Gla+
  KIR60767.1 161 SLTGAVVAFRLLAVAGVTLTAACLPVLARRCGV--PVGRALWL---ALASPLIGVHLVAGAHNDALMVgLLVAGLAVVAarPGRPVpllAGGVLLGLAV 254
                 2555999***********************976..44444444...6677777888888876655554044444433331144555986799******* PP

        GT87 108 aiKltPalfllylll.....rrrwralaaa...aatalvltalpllllppssley.fletlfdtseriaedvgnqsllslagllaralalglsavtllw 197
                  iK+t+++++ + +l       r+ral+     ++ ++v+t++++ +++   l++ + + l + +e ia++   + +   ag++a +++l  +a +++ 
  KIR60767.1 255 SIKITGLVVIPFAALaaiggPYRFRALLRDggpVVAGAVATVMGVTFAG--GLDFgWIGGLESGGEVIAWTSPPTAVGQTAGYVALLFGLHVDALPVAR 351
                 ***********87775565534577777543134444444444555555..333339999999978778888888888889999998888887789999 PP

        GT87 198 lvlvllvvalaavaawrlrrrerllalaaallvallalLv 237
                 ++ vl+++al+++++wr+r r+++     + l+a+  + +
  KIR60767.1 352 AIGVLALAALLLWLWWRARTRDPFFHAG-LALAAT--VAL 388
                 99999999999***99997666655544.344444..445 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.088
        GT87 102 liGlaaaiKltPalfllylllrrrwralaaa.aatalvltal.pllllp.p 149
                 +++laa++ l P++ + y ++     a++a  ++++++++++ ++l+lp +
  KIR60767.1 379 GLALAATVALSPIVHPWYWIWPLTVLAATARdGVWFAAVALVgSFLVLPdG 429
                 57888888899*************99999999*********9999999943 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.11
        GT87  30 nlaalllalrlllrrlgr 47 
                 +l+ l++a+ +l+r +  
  KIR60767.1 445 TLL-LIWAAVRLVRSARA 461
                 333.33333333344322 PP

>> DUF5316  Family of unknown function (DUF5316)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00044       3.9       7      31 ..      10      34 ..       6      38 .. 0.89
   2 ?    2.0   0.3     0.023   2.1e+02       4      28 ..     254     273 ..     251     282 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00044
     DUF5316  7 kisGfvglvfiliagllsGafvsgd 31
                  +G +g  ++++++ l G+f +gd
  KIR60767.1 10 RWTGLAGSLLLAVSAFLGGVFPDGD 34
                568*********************8 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.023
     DUF5316   4 ltykisGfvglvfiliagllsGafv 28 
                 + +ki+G v + f ++a++     +
  KIR60767.1 254 VSIKITGLVVIPFAALAAI-----G 273
                 5689999999999999999.....4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3166.81
//
Query:       KIR60768.1  [L=474]
Description: glutamine synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-130  435.6   0.0   1.4e-130  435.3   0.0    1.0  1  Gln-synt_C  Glutamine synthetase, catalytic domain
    9.2e-27   92.6   0.2    1.9e-26   91.6   0.2    1.6  1  Gln-synt_N  Glutamine synthetase, beta-Grasp domain


Domain annotation for each model (and alignments):
>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  435.3   0.0  1.6e-134  1.4e-130       2     345 .]     105     471 ..     104     471 .. 0.99

  Alignments for each domain:
  == domain 1  score: 435.3 bits;  conditional E-value: 1.6e-134
                 T-HHHHHHHHHHHHHHTTC..EEEEEEEEEEEEESEECCCE.SSEEEEEEE.T..............B...B.TSS-TTBHCCCCCTCCHHHHHHHHHH CS
  Gln-synt_C   2 rdPRsvlkralarlaeeGl..tvvvgpElEFflfdkeedke.asksllevdse..............ekgrpaekggyfsvapvdeaedlrreiveale 83 
                 rdPR+v+k+a+a+la++G+  t+++g+E+EF++fd+ ++++ a++s++ +ds               +++++a kggyf+v+pvd+ +dlr+ +v+ l 
  KIR60768.1 105 RDPRNVAKKAEAYLAASGIadTAYFGAEAEFYIFDSIRHETsAHQSFYYIDSIegawntgreepggnRGYKTAYKGGYFPVPPVDHYADLRDGMVRRLV 203
                 7**************************************9999999****999**************9******************************* PP

                 HTT--EECCEEECCCT.EEEEEE--EECHHHHHHHHHHHHHHHHHHHHTT-EEE-SSSSSTTS---BEEEEEEEEECTTEESSB-TTSGGGB-HHHHHH CS
  Gln-synt_C  84 algieveashhEvatg.QvEinlkfadalkaaDnvvtfKrvvkevArkhgltatFmpKplegdnGsgmHvhlSlwdkdgknlfadeddeyalselarhf 181
                 ++g++ve+shhEv+t+ Q Ein+kf+++l++aD++++fK+++k+ A  +g+tatFmpKpl+gdnGsgmH+h+Slw  +g++lf+de++  +ls++ar +
  KIR60768.1 204 DAGFTVERSHHEVGTAgQSEINYKFSTLLHSADQLQLFKYLIKNEAWVNGKTATFMPKPLFGDNGSGMHTHQSLW-LNGEPLFYDETGYAGLSDTARWY 301
                 ***************99**********************************************************.***********9999******** PP

                 HHHHHHHHHHHHHHHS-SCCHHHHCSSSTTSSSBEEEESS-TTCSEEEE-..TSGGCSTEEEECEBTTS-HHHHHHHHHHHHHHHHHTT--------S- CS
  Gln-synt_C 182 igGllkhakaltaltaptvnSYkRlvpgyeaPvalawgarNRsallRipa..skekakrvElRlpdasaNPYLalAallaAgldGienklepgepvekd 278
                 igGll+ha++l+a+t+ptvnSY+RlvpgyeaPv+l++++rNRsa+ Rip   s++kakrvE+R+pd+s+NPYLa++a+++AgldGi++k+ep++p++kd
  KIR60768.1 302 IGGLLHHAPSLLAFTNPTVNSYRRLVPGYEAPVNLVYSQRNRSACTRIPVtgSNAKAKRVEFRVPDPSSNPYLAFSAMMMAGLDGIKSKIEPPAPIDKD 400
                 **************************************************999********************************************** PP

                 SSSS-TTTHTSS-B--SSHHHHHHHHHCS.HHHCC..SS-HHHHHHHHHHHHH.CHHHHHCT--HHHHHHH CS
  Gln-synt_C 279 lyelspeerkgieelPasleeAlealeed.ellke..vlgeevieaylalkra.Eleeleeevsdwelery 345
                 ly+l+pee  +++++P sl e l+ale+d ++l +  v++ ++i+++++ kra E++ ++ ++++ e+ +y
  KIR60768.1 401 LYDLPPEEWGSVKQVPGSLPEVLDALEADhDYLLDggVFTPDLISTWVEWKRAnEVDPVRLRPTPHEFAMY 471
                 *******999********************999999****************99**************998 PP

>> Gln-synt_N  Glutamine synthetase, beta-Grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.2   2.1e-30   1.9e-26       1      82 [.      16      96 ..      16      97 .. 0.95

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 2.1e-30
                T--EEEEEEE-SSS-EEEEEEEHHHHHHHTTTT-EEEETTSSTTT------EEEEEEEGGGEEE-SS-SS-.EEEEEEEEE- CS
  Gln-synt_N  1 evkfvdlqFtDikgklkhvtipadelsedaleegvsFDGSsiegfaeieeSDmlLkPdlstavidPfreekktarvicdvyd 82
                +vkfvd++F+D+ g ++h+++p+++++++++++g++FDGSsi+gf+ i+eSDmlL Pd+ +a+idPfr++k t+ +   ++d
  KIR60768.1 16 DVKFVDVRFCDLPGVMQHFNLPVESFDDSVFNDGLAFDGSSIRGFQAIHESDMLLLPDVASAFIDPFRAQK-TLALNFFIHD 96
                69*******************************************************************99.9988777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3607.04
//
Query:       KIR60769.1  [L=229]
Description: hypothetical protein TK50_23200 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-73  247.4   2.5    1.2e-73  247.1   2.5    1.0  1  DUF4191        Domain of unknown function (DUF4191)
  ------ inclusion threshold ------
      0.098   12.5   3.1       0.13   12.0   3.1    1.2  1  FA_desaturase  Fatty acid desaturase
       0.22   11.3   8.2        0.3   10.8   8.2    1.1  1  Trp_oprn_chp   Tryptophan-associated transmembrane protein (T
       0.34   11.0   2.0       0.57   10.3   2.0    1.5  1  DUF3742        Protein of unknown function (DUF3742)


Domain annotation for each model (and alignments):
>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.1   2.5   2.6e-77   1.2e-73       6     218 ..      12     220 ..       7     221 .. 0.98

  Alignments for each domain:
  == domain 1  score: 247.1 bits;  conditional E-value: 2.6e-77
     DUF4191   6 grlkqiaqvfkltrkedkkllwlllaaflvvvvvfvvlglllgslilllilgillgllvalivltrraekaayaqiegqpGaaaavlenlrrgwrvepa 104
                 +rlkqi +vfk+t+k+d+++ +l+++a+l++++++vv++ll+   +l+l+lgill+ll+ livl+ r+++a+++ +egqpGaaa+++e++r++wrv+pa
  KIR60769.1  12 QRLKQIGMVFKFTAKQDRWFAPLAAGAVLIPLALTVVAVLLW--GWLWLPLGILLALLALLIVLNLRSNAAMMNAAEGQPGAAAQIMESMRGDWRVSPA 108
                 89***************************************8..6****************************************************** PP

     DUF4191 105 vavtrqqDvvhrvvGrpGvvLvgEGnkkrvkkllaqekkrikrvvadvpvyeivvGngegqvplkkLqktlkklprnltkaeveevekRLkaldkkskl 203
                 v++t+q+D+vh v+Gr+Gv+L++EG+++rv+ ll qek+r+++v+++ p++++v+G+geg++p++kL+ tl++lpr+l+ ++v++++kRLkal  +++ 
  KIR60769.1 109 VSATTQMDMVHLVIGRAGVILLAEGHPQRVRGLLGQEKRRLAKVIGSAPLHDYVIGQGEGELPIRKLRMTLMRLPRALSGKDVNALDKRLKAL--TARP 205
                 *********************************************************************************************..6999 PP

     DUF4191 204 piPkGpdPkrarvsr 218
                 ++PkG +Pk++r++r
  KIR60769.1 206 QMPKGAIPKNMRPPR 220
                 ************998 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.1     3e-05      0.13     123     187 ..      20      89 ..       8     120 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3e-05
  FA_desaturase 123 rrrapsksrrrkwrllawlllllawlglwlalllllglall..lwlvplllllfllalvl.....nyveHyg 187
                    +++  +k+ r+++ l a ++l++ +l ++++ll+ + +  l   +l++ll+ll++l l++     n +e + 
     KIR60769.1  20 VFKFTAKQDRWFAPLAAGAVLIPLALTVVAVLLWGWLW--LplGILLALLALLIVLNLRSnaammNAAEGQP 89 
                    56667777788888888888888666666666654444..33588888888888888877554444444444 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   8.2   6.8e-05       0.3      41     132 ..      31     132 ..      20     146 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.8e-05
  Trp_oprn_chp  41 wapaltalAlvllAaavAvlavrglgrrvvgvllalagagaavaalslltdpadaaraaaaaatgvasaaaavelta..........wpvlalaggv 127
                    ap+++   l+ lA +v ++++ g++   +g+llal++++++++  s ++  ++a+ +  aaa+ ++s   + ++++          + ++   +gv
    KIR60769.1  31 FAPLAAGAVLIPLALTVVAVLLWGWLWLPLGILLALLALLIVLNLRSNAAMMNAAEGQPGAAAQIMESMRGDWRVSPavsattqmdmVHLVIGRAGV 127
                   355666666788****************************999887777776666666667777777777777744433333344444444444555 PP

  Trp_oprn_chp 128 lllla 132
                   +ll+ 
    KIR60769.1 128 ILLAE 132
                   55544 PP

>> DUF3742  Protein of unknown function (DUF3742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.0   0.00013      0.57      44      87 ..      35      78 ..      12     107 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00013
     DUF3742 44 vatavlwvvklavlGvllyvafWlalllvvvvlvawaarsvdts 87
                +a avl+   l+v+ vll+   Wl l +++++l+++++ +  ++
  KIR60769.1 35 AAGAVLIPLALTVVAVLLWGWLWLPLGILLALLALLIVLNLRSN 78
                6789999999****************766666666666555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1664.05
//
Query:       KIR60770.1  [L=496]
Description: FAD-dependent oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-22   78.1   0.1    2.1e-11   43.8   0.1    2.2  2  Amino_oxidase  Flavin containing amine oxidoreductase
    3.8e-15   55.9   0.2    1.3e-14   54.2   0.1    2.0  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    1.1e-08   35.1   4.4    1.1e-07   31.7   4.4    2.4  1  DAO            FAD dependent oxidoreductase
    7.5e-07   28.8   0.2     0.0037   16.7   0.0    2.5  2  FAD_oxidored   FAD dependent oxidoreductase
    3.1e-06   26.6   0.2    4.3e-05   22.8   0.1    2.1  2  FAD_binding_2  FAD binding domain
    3.3e-06   26.6   0.1    0.00032   20.0   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    5.4e-05   22.1   0.1    0.00018   20.4   0.1    1.7  2  HI0933_like    HI0933-like protein
    0.00011   21.5   0.0    0.00019   20.8   0.0    1.3  1  Thi4           Thi4 family
    0.00021   20.7   0.1    0.00048   19.5   0.1    1.6  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.001   19.6   0.0      0.031   14.8   0.1    2.5  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0016   17.8   0.1      0.027   13.7   0.1    2.1  2  FAD_binding_3  FAD binding domain
     0.0017   18.4   0.7       0.13   12.2   0.1    2.7  2  NAD_binding_9  FAD-NAD(P)-binding
     0.0028   16.8   0.1        0.1   11.6   0.0    2.2  2  Lycopene_cycl  Lycopene cyclase protein
     0.0089   15.1   0.1      0.013   14.6   0.1    1.2  1  GIDA           Glucose inhibited division protein A
     0.0098   15.6   0.4       0.33   10.6   0.0    2.3  2  GLF            UDP-galactopyranose mutase


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.1   1.7e-14   2.1e-11       2      49 ..      14      61 ..      13     108 .. 0.90
   2 !   32.2   0.0   5.6e-11   6.7e-08     207     291 ..     209     301 ..     118     316 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.7e-14
                   HHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEETTEEEESS--EEET CS
  Amino_oxidase  2 aGLaaArqLlsaGfdVtvlEardrvGGRirtvrsdGylielGamwftg 49
                   aGL+aA++L++++  V vlEa+d vGG  rtv++dG+ ++ G+++f+ 
     KIR60770.1 14 AGLTAAYELTRRNAPVEVLEADDVVGGISRTVERDGWRFDIGGHRFFT 61
                   9*********************************************97 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 5.6e-11
                    THTHHHHHHHHH..TTTTEEEETSEEEEEEEE.ETTC..EEEEETTSTEE.EESEEEE-S-HHHHHSSEEESCC.SH..HHHHHHHHSEEEEEE CS
  Amino_oxidase 207 gGlsqlpealae..elrgldirlntrVkeikr.egdg..vtvtledgevv.eaDaVvvTvplgvlkailfsPpl.pd..ekaeairnlgfgsvn 291
                     G +++ e+ ae   + g+++ ++t V++++r +g    vtv   dge + eaD+V++ +pl+ l     +Pp  p+  ++a+a+r+ +f +v+
     KIR60770.1 209 LGPGMMWERCAElvAKAGGTVTMGTSVTRVHRaDGRAvaVTVAGPDGERRiEADHVISSMPLPELV-RAVDPPApPPvlAAADALRHRDFLTVA 301
                    5556667777778889****************7555533555555888889***************.*****9945478888888888888776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.1   1.1e-17   1.3e-14       1      67 [.       8      72 ..       8      73 .. 0.93
   2 ?   -3.2   0.0       8.4     1e+04      34      51 ..      84     101 ..      84     106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 1.1e-17
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEECTS---EEETTHHHHCHHHHCC CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpgvrvdygahifhgsgyypnvrrllre 67
                   I+GaG +Gl+aAy+L+++++ v++le+ d +GG ++++e++g r+d g h f++  +  +v +++ e
     KIR60770.1  8 IIGAGPAGLTAAYELTRRNAPVEVLEADDVVGGISRTVERDGWRFDIGGHRFFT--KVGRVEEFWHE 72
                   9***************************************************99..46788888765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.4
                    GG-EECETTCEECTS--- CS
  NAD_binding_8  34 raasyevpgvrvdygahi 51 
                    r++++++ g  +dy+ ++
     KIR60770.1  84 RMSRIHYRGKLFDYPLRA 101
                    577788899999999886 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   4.4   9.5e-11   1.1e-07       1     200 [.       5     268 ..       5     429 .. 0.71

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 9.5e-11
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESS..... CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaad..... 92 
                 + viiG+G +Gl++AyeL+rr+  V +le++d +g    g +  + + g+r    +++++  + +  e+++e+  + g d+ +r++++ + +++     
  KIR60770.1   5 HTVIIGAGPAGLTAAYELTRRNapVEVLEADDVVG----GISRTVERDGWRFDIGGHRFFTKVGRVEEFWHEVLPD-G-DFLLRPRMSRIHYRGklfdy 97 
                 68******************9889*******9999....5555677999985555778887777778999888887.5.79999999999988666667 PP

                 ...................................................................HHHHHH..HHHHHHHH.HHTTT.TEEEEEHHH CS
         DAO  93 ...................................................................eeelea..ldkllall.leagl.daelldaee 120
                                                                                    e  l+a   ++++++l l ag+ ++ ll ++ 
  KIR60770.1  98 plragnalgnlgiveavrcvgsyvwarlrppadqshfegwvsarfgtrlyrmffktytekvwgfpatE--LQAdwAAQRIRNLsL-AGAvRNALLPRR- 192
                 77777777777777777777777777777777777777777777777777777766666666665331..221112234444433.444233456554. PP

                 HHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEE.EEEEEEEE-- CS
         DAO 121 vrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gen.daadavVnaa 200
                   +++  +  l   + yp    + p  +    a+ ++++G+++  gt vt++ + dg+++ v ++ p ge+  +ad+v+ ++
  KIR60770.1 193 --ARAD-ITSLIEEFQYPK---LGPGMMWERCAELVAKAGGTVTMGTSVTRVHRADGRAVAVTVAGPdGERrIEADHVISSM 268
                 ..2221.224556677777...999999999********************9888888888886667788855779999998 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.1e-06    0.0037       3      37 ..       7      41 ..       6      72 .. 0.95
   2 !    9.8   0.0   0.00038      0.45      86     140 ..     211     265 ..     111     276 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.1e-06
  FAD_oxidored  3 vVvGGgpaGvaAAiaAaraGakvlLveergvlGGl 37
                  v++G+gpaG++AA+   r+ a v ++e ++v+GG 
    KIR60770.1  7 VIIGAGPAGLTAAYELTRRNAPVEVLEADDVVGGI 41
                  8*********************************6 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00038
  FAD_oxidored  86 pevakavleemlaeagvtvllntrlvevekegkriesvtveskegrktirAkvfi 140
                   p ++ +   e++a+ag tv ++t +++v++ ++r  +vtv+  +g+++i+A+ +i
    KIR60770.1 211 PGMMWERCAELVAKAGGTVTMGTSVTRVHRADGRAVAVTVAGPDGERRIEADHVI 265
                   6666677789999*****************999*******98889******9988 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   3.6e-08   4.3e-05       2      37 ..       6      43 ..       5      56 .. 0.88
   2 ?    1.7   0.0     0.092   1.1e+02     145     196 ..     216     265 ..     136     269 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 3.6e-08
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS..G CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg..a 37
                    ++iG+G AGL+AA+e++++++ v v+e  +++gg   
     KIR60770.1  6 TVIIGAGPAGLTAAYELTRRNAPVEVLEADDVVGGisR 43
                   59*****************************9999444 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.092
                    HHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEE CS
  FAD_binding_2 145 arlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavv 196
                    +r +e + kag ++   t+++++ + dgr++ ++v+     +e+ri+a++v+
     KIR60770.1 216 ERCAELVAKAGGTVTMGTSVTRVHRADGRAVAVTVA--GPDGERRIEADHVI 265
                    67777788889999999*******************..88888899999998 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.7e-07   0.00032       2      33 ..       5      36 ..       4      48 .. 0.86
   2 ?    4.3   0.0     0.016        20     188     233 ..     217     266 ..     192     268 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.7e-07
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlveleg 33
                 + v+iG+GpAGl+aa +l + +a v ++e+++
   KIR60770.1  5 HTVIIGAGPAGLTAAYELTRRNAPVEVLEADD 36
                 679********************999996443 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.016
                  HHHHHHHHTTEEEEESCEEEEEEETTE...EEEEEETTSCE.EEESEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx.xxxxxxxx RF
  Pyr_redox_2 188 aleealekeGvevklgtsvkeidgnge...klevvledgee.idadlvvv 233
                  +++e + k G +v +gtsv+++ + +     ++v   dge+ i+ad v+ 
   KIR60770.1 217 RCAELVAKAGGTVTMGTSVTRVHRADGravAVTVAGPDGERrIEADHVIS 266
                  445556666778899**9999998888876777999999888****9985 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.5e-07   0.00018       2      36 ..       5      39 ..       4      40 .. 0.91
   2 ?   -1.4   0.0       0.6   7.2e+02     119     159 ..     222     265 ..     215     268 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.5e-07
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 ++++iG+G+AGl aA ++ +r++ V +le+ + +g
   KIR60770.1  5 HTVIIGAGPAGLTAAYELTRRNAPVEVLEADDVVG 39
                 589**************************987665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.6
                  HHHHT-EEE-S--EEEEECETTE.EEEEE....TTEEEEESEEE CS
  HI0933_like 119 lkeagvklrletevksvekeedgkfrvkt...kseeeleadklv 159
                  + +ag ++ + t+v++v++ +++++ v++   ++e+++ead+++
   KIR60770.1 222 VAKAGGTVTMGTSVTRVHRADGRAVAVTVagpDGERRIEADHVI 265
                  56889999**********99999999988544478888888887 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.6e-07   0.00019      21      55 ..       7      40 ..       4      45 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.6e-07
                EEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T CS
        Thi4 21 vivGaGssGLtaayylakkpdlkvailersvspGG 55
                vi+GaG++GLtaay l+++ +  v +le+   +GG
  KIR60770.1  7 VIIGAGPAGLTAAYELTRR-NAPVEVLEADDVVGG 40
                9******************.999*****9988887 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1     4e-07   0.00048       1      36 [.       7      41 ..       7      47 .. 0.90
   2 ?   -3.4   0.0       3.7   4.4e+03      97     113 ..     228     244 ..     214     266 .. 0.44

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4e-07
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnignsi 36
                 +IiGaGPaGl+aa+el + +   + +lE + ++  i
   KIR60770.1  7 VIIGAGPAGLTAAYELTRRNA-PVEVLEADDVVGGI 41
                 7*******************9.89****99888655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.7
  Pyr_redox_3  97 piklfeeVesvkkedeg 113
                   + + ++V++v+++d+ 
   KIR60770.1 228 TVTMGTSVTRVHRADGR 244
                  33334444444443322 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   2.6e-05     0.031       1      35 [.       5      39 ..       5      48 .. 0.89
   2 ?    1.9   0.0      0.28   3.4e+02      42      78 ..     214     250 ..     191     255 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.6e-05
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35
                + v++G+G  gl +A +l++ ++ V v+e+ d + 
  KIR60770.1  5 HTVIIGAGPAGLTAAYELTRRNAPVEVLEADDVVG 39
                68***************************999776 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  42 askilqeklekngievllntkveeiegsedgvesvkl 78 
                 + ++++e + k g +v ++t+v++++  +    +v++
  KIR60770.1 214 MWERCAELVAKAGGTVTMGTSVTRVHRADGRAVAVTV 250
                 5567788889999999999999999966554556776 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   2.2e-05     0.027       4      31 ..       6      33 ..       5      43 .. 0.84
   2 ?    1.6   0.0      0.11   1.3e+02      85     159 ..     192     265 ..     150     267 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.2e-05
                   EEEE--SHHHHHHHHHHHHTTHHEEEEE CS
  FAD_binding_3  4 VlIVGaGpaGlmlallLseaGvrvvlve 31
                   ++I+GaGpaGl++a +L+++   v ++e
     KIR60770.1  6 TVIIGAGPAGLTAAYELTRRNAPVEVLE 33
                   58***************99866666666 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.11
                    EEEEEHH.CHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCE.ECCCCCCCEEEECCTTEEEEEEEEEEE CS
  FAD_binding_3  85 karadle.lesspervtvypqteleriLvehaeerglqvrfktevesle.qdeegvtaevrdketgeeetvrakYlv 159
                    +arad++ l  + +++++ p  + er  +   +++g +v ++t v+ ++ +d+  v+ +v +  +ge+ +++a+ ++
     KIR60770.1 192 RARADITsLIEEFQYPKLGPGMMWERCAELV-AKAGGTVTMGTSVTRVHrADGRAVAVTVAGP-DGER-RIEADHVI 265
                    5566666333566666666666666664443.5677888888887755405555555555544.6776.9****998 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   0.00011      0.13       1      28 [.       7      31 ..       7      50 .. 0.76
   2 ?    3.7   0.1     0.045        54     103     150 ..     217     265 ..     214     268 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
  NAD_binding_9  1 aivGaGprGlavlerLlarakkksplei 28
                   +i+GaGp+Gl+++ +L +r+   +p+e+
     KIR60770.1  7 VIIGAGPAGLTAAYELTRRN---APVEV 31
                   7*****************95...44444 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.045
  NAD_binding_9 103 lfeellarlpegvtvevhraevvdleeradgqavlladg.aslaadaVv 150
                    + +el+a++   vt+    ++v++ + ra  ++v   dg ++++ad+V+
     KIR60770.1 217 RCAELVAKAGGTVTMGTSVTRVHRADGRAVAVTVAGPDGeRRIEADHVI 265
                    5677888887766666666666666666666677776774779*****8 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   8.8e-05       0.1       3      32 ..       7      34 ..       5      64 .. 0.77
   2 ?    3.0   0.0     0.037        44     106     147 ..     232     276 ..     195     285 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.8e-05
  Lycopene_cycl  3 vviGaGpAglslAarlteakpglkvvliea 32
                   v+iGaGpAgl  A +lt+ ++ ++v+  ea
     KIR60770.1  7 VIIGAGPAGLTAAYELTRRNAPVEVL--EA 34
                   8***************7666655554..44 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.037
  Lycopene_cycl 106 eakvesveeeea..geslvvl.eggrkirarlvvdarglaslkka 147
                       v++v+ ++     ++v+  +g+r+i+a  v+ + +l++l +a
     KIR60770.1 232 GTSVTRVHRADGraVAVTVAGpDGERRIEADHVISSMPLPELVRA 276
                    34466666555521233344424456************9998865 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.1e-05     0.013       3      28 ..       7      32 ..       5      45 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
                EEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  3 iViGgGhAGceAAlaaarlGakvlLi 28
                ++iG+G AG+ AA+++ r++a+v  +
  KIR60770.1  7 VIIGAGPAGLTAAYELTRRNAPVEVL 32
                89*********************877 PP

>> GLF  UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00028      0.33       2      25 ..     150     174 ..     149     179 .. 0.83
   2 ?    2.9   0.1     0.066        79     168     204 .]     395     432 ..     385     432 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00028
                 HTHHHHHHHHTSSGGGSBG.GGGCG CS
         GLF   2 lfkgYtkKqWglkpeelda.svlkr 25 
                 +fk Yt+K Wg  ++el+a +  +r
  KIR60770.1 150 FFKTYTEKVWGFPATELQAdWAAQR 174
                 9****************99444455 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.066
                 -EE--SHHHHHHHHHHHH.HHHHCTTEEE-HHHHTTS- CS
         GLF 168 yYpinteenrelyekYke.lakkeekvlfvGRLaeYkY 204
                  Yp+ ++  ++ +e  ++ la++ ++v+ vGR + ++Y
  KIR60770.1 395 AYPVYDSGYEQAVETMRHwLAEALPNVHPVGRNGMHRY 432
                 5899888888777776653789999**********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 3252.36
//
Query:       KIR60771.1  [L=428]
Description: aspartyl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-69  231.8   0.0    1.4e-68  231.3   0.0    1.2  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    2.6e-13   49.8   0.0    4.5e-13   49.0   0.0    1.4  1  tRNA_anti-codon  OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.3   0.0   1.6e-72   1.4e-68       5     313 ..     115     422 ..     112     423 .. 0.94

  Alignments for each domain:
  == domain 1  score: 231.3 bits;  conditional E-value: 1.6e-72
                  HHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE....-E-S-SHHHHHHHHHCTHSEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   5 rlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeff....aLtqspqlylellivagidrvfqia 98 
                  +l++  + lr+++ s+ lr+ + +++ +r  l+ ++f+ei+tP ++ s te+ga+ F +       ++f    +L+qspq+y++l++   ++rv++++
   KIR60771.1 115 QLDHAPVALRHPRRSAALRVAAAAVAGFRAALDARDFVEIHTPKVVASSTESGANVFAL-------DWFgrpaYLAQSPQFYKQLMVGV-FERVYEVG 204
                  667777899**************************************************.......78888889**********99888.******** PP

                  EEE--S--BTTB-S-CEEEEEEEEET-SCHH.HHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS..-SS--HHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
  tRNA-synt_2  99 raFRaEdsrtdrhlaEFtqieaemsfieeed.imqvleelikslvkevlessakdiefvirrnskdlkkpfkrltykeaieklnei..gkdldkader 193
                  ++FRaE ++t rhla++t+++ae+ f+ ++  +m vl + +  ++ +v  + a+    +   +  +++ +++ ++++ea+ ++     + dl  a+er
   KIR60771.1 205 PVFRAEPHDTARHLAQYTSLDAELGFVGDHTdVMAVLRDTLAGMLATV-ADRAGTALGTLGVTVPQVPGSIPAVHFTEALAIAGAPadEPDLAPAHER 301
                  ***************************88877****************.667788888888888899999**********99654344779999**** PP

                  HHHH....HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHCCHHSSSGGGGHHHHHHHHCT--SEEEE CS
                  xxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 194 alvk....keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRiedpeeleeklkskgldeeaeekfswylealeyGapphgGl 287
                  al +    ++++e+vfvt +P + +pFy+  +  +++ ++++Dll++g+Elv+G +R+++++   + l + g      e++  y++a++ G+pphgG+
   KIR60771.1 302 ALGEwarrEHGSEFVFVTGYPMAKRPFYTHPDPARPAYSNGFDLLFRGLELVTGGQRLHRHDDYLAALAARGEP---VEPYAGYVDAFRHGMPPHGGF 396
                  **9999999***************************************************************99...********************* PP

                  EEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 288 glGldRlvmlllgsesIrdviaFPkl 313
                  ++Gl+R+v+ l+g+ ++r+v+aFP+ 
   KIR60771.1 397 AIGLERFVARLVGAANVREVTAFPRD 422
                  ************************95 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   5.1e-17   4.5e-13       1      75 [.      17      91 ..      17      92 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 5.1e-17
                     EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEEC...TTSSEEEEEEEEEE CS
  tRNA_anti-codon  1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrr...pggelelkveeiel 75
                     V+vaG+v+++  r  ++v+f+++rD  g  qvv+ + +a++  e+l+e++vv+vt +v ++   p g +el+++ +++
       KIR60771.1 17 VRVAGWVHRR--RLLKSVAFLIIRDAAGLAQVVAADPAARAAVEQLTEETVVEVTATVVATpaaPAG-VELTHPTVRP 91
                     89********..*************************************************898888.*****99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3171.25
//
Query:       KIR60772.1  [L=130]
Description: extradiol dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-14   54.6   0.0    1.4e-14   54.4   0.0    1.0  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    1.9e-10   41.5   0.8    2.3e-10   41.2   0.8    1.1  1  Glyoxalase_6  Glyoxalase-like domain
    0.00083   19.6   0.0     0.0017   18.6   0.0    1.5  1  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
     0.0017   18.5   0.5      0.021   14.9   0.3    2.1  2  Glyoxalase_3  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   3.1e-18   1.4e-14       2     126 ..       3     124 ..       2     126 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 3.1e-18
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEE.EESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTG CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdn.teeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagv 99 
                 id v+l+v++++ +++F+ +vLGf+lv++++  t+ +   r  +++  g + +l+l++a++ ++     +  + ++   ++l v+d+++a++rl +agv
  KIR60772.1   3 IDLVTLVVAEYDPAIAFFIEVLGFELVEDSPAqTTDGRPKRWVVVRPPGAQTGLLLARADGERQEAA--VGAQTAGRVGFFLRVDDFDAAYRRLVDAGV 99 
                 8899***************************855555999999*****************9999888..444677888888999*************** PP

                 EEEEEEECHHCTEEEEEEEEETTSEEE CS
  Glyoxalase 100 kvvaepgrhyfgalysfyfrDpdGill 126
                 ++ ++p  +++g++    frD  G+ +
  KIR60772.1 100 EFLRPPRAEPYGRVAV--FRDIAGNPW 124
                 **************94..***999987 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.8   5.2e-14   2.3e-10       3     106 ..       7     126 ..       5     127 .. 0.80

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 5.2e-14
  Glyoxalase_6   3 vldaadpaalaaFwaaalgweveree...........aaledpegvgpaae.daatllfqrvpe.........paknrvHldlavedldaevarlva 78 
                   +l +a+ + ++aF+ ++lg+e+++++                   v       ++ ll+ r++          +   rv + l+v+d da+ +rlv+
    KIR60772.1   7 TLVVAEYDPAIAFFIEVLGFELVEDSpaqttdgrpkrW-------VVVRPPgAQTGLLLARADGerqeaavgaQTAGRVGFFLRVDDFDAAYRRLVD 96 
                   55677888999**************9999865443331.......333333033456666666699999998654559******************* PP

  Glyoxalase_6  79 lGArvlreprdgthgr..vlaDPeGneFcv 106
                   +G + lr+pr++  gr  v++D +Gn++++
    KIR60772.1  97 AGVEFLRPPRAEPYGRvaVFRDIAGNPWDL 126
                   ***************************987 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.8e-07    0.0017       3      95 ..       6     103 ..       4     116 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.8e-07
                   EEEE-S-HHHHHHHHHH.TT-EES..S--E.EETTTTEEE.EEEEETTEEEEEEEESSTT-THHH..TS-EEEEEEEEES-HHHHHHHHCTTTEEEE CS
  Glyoxalase_4   3 igivVeDleaavarfsallGvgpw..qryrdepqevdlaf.allgsgsvqieLieplegpeflae..hgeglhhlaywvddldaavarleeqGfevv 94 
                   + +vV + + a+a+f ++lG++     + + ++ + +  + ++  +++  + L  ++ +++  a   + +g   + ++vdd+daa +rl ++G+e++
    KIR60772.1   6 VTLVVAEYDPAIAFFIEVLGFELVedSPAQTTDGRPKRWVvVRPPGAQTGLLLARADGERQEAAVgaQTAGRVGFFLRVDDFDAAYRRLVDAGVEFL 102
                   5689****************98551133444444555444155555445666666666665555533555555555669****************88 PP

                   E CS
  Glyoxalase_4  95 q 95 
                    
    KIR60772.1 103 R 103
                   5 PP

>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0072        32       4      30 ..       6      32 ..       3      39 .. 0.86
   2 !   14.9   0.3   4.7e-06     0.021      50     114 ..      27     114 ..      19     128 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0072
  Glyoxalase_3  4 vvlavpdleeaaarfarrlGftvtpgg 30
                  v+l+v + + a+a f + lGf++++ +
    KIR60772.1  6 VTLVVAEYDPAIAFFIEVLGFELVEDS 32
                  789999****************99766 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 4.7e-06
  Glyoxalase_3  50 Ellavdpeapaperpr.lfgld.....................rlakgeglhtlalrtddidataarlraaGvd.eagrrvrpdggdl 114
                   El++  p++ + +rp+ ++  +                       a++ g +++ lr+dd da+++rl +aGv+  +  r +p g+ +
    KIR60772.1  27 ELVEDSPAQTTDGRPKrWVVVRppgaqtglllaradgerqeaaVGAQTAGRVGFFLRVDDFDAAYRRLVDAGVEfLRPPRAEPYGRVA 114
                   3333346666666665244444888888888888888877665334789***********************9753333334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1041.54
//
Query:       KIR60773.1  [L=606]
Description: hypothetical protein TK50_23230 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-06   25.9  21.8    8.8e-06   24.8  21.8    1.5  1  DUF2079       Predicted membrane protein (DUF2079)
  ------ inclusion threshold ------
        1.6    7.0  14.5        1.3    7.2  11.3    2.2  2  PTPS_related  6-pyruvoyl-tetrahydropterin synthase related do


Domain annotation for each model (and alignments):
>> DUF2079  Predicted membrane protein (DUF2079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8  21.8   9.8e-10   8.8e-06      45     357 ..     101     458 ..      71     474 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 9.8e-10
     DUF2079  45 pillllaplyalfPsvltLllvqalllslgglplyrlarerllsrrlalliallYlls.p.vvinptl.fdFhpevlaiPllllalllalrr......r 134
                 +   ++apl +l+++++t+l++ +l l++++l  y l +++l   rla+ +  l++++ p +v  ++   ++++  l+ Plll+ ++ alr+      +
  KIR60773.1 101 VYAAVFAPLTYLIGPPATFLVILTLNLAVTALAWYLLLSRQLVRSRLAAGVGALFVAYsPgMVSHANAhLNWTAGWLV-PLLLWRVF-ALREpgrwlrN 197
                 4456899**********************************99************99735244455777888887666.*******9.99998877777 PP

     DUF2079 135 kwllllvlilllllvredlslvvvilglwlilre.....rkrrk...iglillllglawvilvtsvl..iPlfsstksqvfgverysylg......... 214
                  + l +++++ ++   e l ++ ++lg+ l ++      r       ++l++++ gl++ +l  +vl  +Pl    +    g++r+  +g         
  KIR60773.1 198 GVVLGVAVAVAFSIAAEGLFFTALALGVFLPIWAlhperR---ArarAALPAFARGLGVTALTAGVLlaYPLWLHFA----GPQRFHGTGfdpvihaed 289
                 77788899999999*******************7764432...3334699999999999999999999966553322....222222222222224444 PP

     DUF2079 215 ............sSlleillnlitqpllvlqellspegdklkyllllflplgflplls..spawLlvalPllllnllsgyspqlslgyqYsllvipflv 299
                             ++ +++ ++l  +p+  + +++      +  lll+++ lg+l+++     a L +   +  ++ + + +p  ++  +++   +pfl+
  KIR60773.1 290 iaayaayprrslAGEAGLGTSLAPNPTE-ENSFF-----GVPLLLLAVVCLGWLWRRDraLRATLAALGGTAVVFTVLSWGPRAKWAGRHTDTPLPFLL 382
                 4444444465567778888888888885.55555.....666888999999999988654333444444455555555678889999999999999999 PP

     DUF2079 300 laaifglakls.....................ssvelrrikriwsvalvlvlvltlflnparslsflvpdsespvvyls 357
                 l  + + ++                       +  + + ++r+ ++a vl l+ +l+ ++ ++l ++v +   pv+ + 
  KIR60773.1 383 LDDLPVVNAALparlalivapvfgvllaytvdRLRADPPRRRAARAAWVLGLAAALLPLLPTPLLTRVRE---PVPVFI 458
                 9988888888888888888999999998888866677778888888888888888888888888888773...444444 PP

>> PTPS_related  6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1     0.029   2.6e+02     142     178 ..      21      56 ..      17      69 .. 0.70
   2 ?    7.2  11.3   0.00015       1.3      12     134 ..     106     227 ..     104     260 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.029
  PTPS_related 142 krflenlvalvaial.gialssfWlvPllkggltslds 178
                    r  + l+al+a+al g ++s++Wl P     + +++s
    KIR60773.1  21 NRRADALFALLALALaGWVTSGLWLSP--DQRVITVNS 56 
                   56667889999987637889*******..555555555 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00015
  PTPS_related  12 lAllaalvgdlivafklvvllivfvgalgwylllrregr..rlvavvaavLwllfpenlrvafseGniprvlaiaLvpllllallvfvdk.rekrsl 105
                   +A+l  l+g++  +f +++ l ++v al+wylll r     rl a v+a+    +p ++  a+   n        Lvplll+ +    +  r  r+ 
    KIR60773.1 106 FAPLTYLIGPP-ATFLVILTLNLAVTALAWYLLLSRQLVrsRLAAGVGALFVAYSPGMVSHANAHLNWTAG---WLVPLLLWRVFALREPgRWLRNG 198
                   78899999776.68*****************999886443477777777777889********99999888...67777765554433320223333 PP

  PTPS_related 106 valallmslialshamvalivglaifvfl 134
                   v l ++++++  + a  ++ + la+ vfl
    KIR60773.1 199 VVLGVAVAVAFSIAAEGLFFTALALGVFL 227
                   33334444444444445555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 3801.87
//
Query:       KIR60774.1  [L=413]
Description: feruloyl esterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-32  111.0   5.4    5.6e-32  111.0   5.4    2.0  2  Esterase_phd   Esterase PHB depolymerase
    3.6e-09   36.4   0.0    1.1e-08   34.8   0.1    1.8  2  Peptidase_S9   Prolyl oligopeptidase family
     0.0011   18.7   0.8     0.0025   17.5   0.6    1.7  2  Abhydrolase_1  alpha/beta hydrolase fold
     0.0021   17.8   0.9     0.0046   16.6   0.9    1.5  1  Esterase       Putative esterase
  ------ inclusion threshold ------
      0.037   13.8   0.5      0.094   12.5   0.5    1.6  1  Abhydrolase_2  Phospholipase/Carboxylesterase
      0.044   13.6   0.5      0.044   13.6   0.5    2.4  2  Abhydrolase_3  alpha/beta hydrolase fold
      0.062   12.9   0.0        0.3   10.7   0.0    1.9  1  FSH1           Serine hydrolase (FSH1)


Domain annotation for each model (and alignments):
>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.9       1.4   3.5e+03     101     116 ..      11      28 ..       5      48 .. 0.59
   2 !  111.0   5.4   2.2e-35   5.6e-32       5     203 ..      55     255 ..      51     270 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.4
  Esterase_phd 101 vaGlsaGaalad..llal 116
                   +aG  aGaala   l+a 
    KIR60774.1  11 LAGAVAGAALAAaaLVAV 28 
                   567777777653113443 PP

  == domain 2  score: 111.0 bits;  conditional E-value: 2.2e-35
  Esterase_phd   5 lylppGarrgamplvvmlhGctqsveefaaGtrmnlladklGvvvlypeqslranaqkcwnwykdtd.raGrGeaavvvalvdalvdehrvdaarvy 100
                    y p G +    p vv+lhGctq++  + a +  +  ad+  ++++ p+qs   +a  c+nw+ + d  +G+Geaa ++ +v    + +++d +r+ 
    KIR60774.1  55 AYRPDGLPA-NAPAVVLLHGCTQNAAGYVANSGWQKYADQWKFALIVPQQSSANQALTCFNWFTEGDiARGQGEAASIAQMVGYAKTTYGLDGSRIA 150
                   578889998.78***************************************************9666379*************************** PP

  Esterase_phd 101 vaGlsaGaaladllalhypdvfaavalhsGlalGeaadvisaldvmrrGlrqapaaavdalveagaypgl....p.alvvqGdadtvvavknaeslv 192
                   ++GlsaG+a+ +++   yp+ faa ++ +G+++ ++  + +++    +G+ ++p+a  d lv a aypg     p   + +G ad +v + na +  
    KIR60774.1 151 ISGLSAGGAMVSVMLAAYPELFAAGSVIAGVPYRCSPPASTSV-CQYSGVDKTPTAWGD-LVRA-AYPGYagrrPrVAIWHGTADSTVVPANAVESR 244
                   ***********************************99877776.5679******98766.6666.798863333524589*************8877 PP

  Esterase_phd 193 valrrlsGlad 203
                    +  +  G a+
    KIR60774.1 245 DQWTNVLGVAQ 255
                   77777777665 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.1   4.4e-12   1.1e-08      32     164 ..     115     242 ..     113     253 .. 0.87
   2 ?   -4.0   0.0       3.3   8.4e+03     173     191 ..     273     292 ..     267     310 .. 0.54

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 4.4e-12
                   HHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTSTHH.HCCCC--TTTCHHH CS
  Peptidase_S9  32 fhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdllte.eymewgnpeeneeg 127
                   +  +g+   gq e++ + +++ ++ +++  d +r+ai G S+GG ++ ++l+  p+lF+a+   ++v    +   +t++ +   ++++++++ +   
    KIR60774.1 115 WFTEGDIARGQGEAASIAQMVGYAKTTYGLDGSRIAISGLSAGGAMVSVMLAAYPELFAAGSVIAGVPYRCSPPASTSVCQYsGVDKTPTAWGDLV- 210
                   5556677789999999999************************************************99999999988844447888888855554. PP

                   HHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHH CS
  Peptidase_S9 128 ykelspyspldnvkaypplLlihGlaDdrvppaealk 164
                      +++y  ++   + p++ + hG+aD+ v+pa+a++
    KIR60774.1 211 ---RAAYPGYAG--RRPRVAIWHGTADSTVVPANAVE 242
                   ...678888999..99****************99875 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 3.3
                   S-S.EEEEEETTS-SSTTSS CS
  Peptidase_S9 173 gkn.vlllifpdegHgvgkp 191
                   g++ v+l    + gHg   +
    KIR60774.1 273 GDDaVRLYRVAGMGHGTPVD 292
                   55556777777777765433 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.6   9.9e-07    0.0025       1     135 [.      66     213 ..      66     222 .. 0.78
   2 ?   -1.9   0.0      0.81   2.1e+03     213     243 ..     223     253 ..     213     261 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 9.9e-07
                    SEEEEE-STTTCGGGGTTGHHHHHHHHT.TSEEEEEEETTSTTSSSTTTGB..........CHHSHHHHHHHHHHHHHHCTTS..SEEEEEETHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakd.gfdvillDlrGvgySspapacin.........ddygtasvaddldrildalgdd..kltlvGhSmGG 84 
                    p++v+lhG + ++  + +++  +  a++ +f +i   ++   +   a++c n          + + as+a ++ +++  +g+d  ++++ G S GG
     KIR60774.1  66 PAVVLLHGCTQNAAGYVANSGWQKYADQwKFALI---VPQQSSANQALTCFNwftegdiarGQGEAASIAQMVGYAKTTYGLDgsRIAISGLSAGG 158
                    799********77765555444444442244444...455566666688877777777777667999*******99666665433899******** PP

                    HHHHHHHHHHGGGEEEEEEESE....CSSCCHHHHHHHHHHHHHHCHHCHHHHHH CS
  Abhydrolase_1  85 mialayaaeyperVkalvllga....idpaaslieaqrqqaksfpdffdgyaadc 135
                    ++++ ++a ype  +a   +++    ++p+as++ +q+  + + p+++   + + 
     KIR60774.1 159 AMVSVMLAAYPELFAAGSVIAGvpyrCSPPASTSVCQYSGVDKTPTAWGDLVRAA 213
                    ****************9999999****************9999999998877665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.81
                    EEEEEEETTCSSSCHHHHHHHHHCHTSEEEE CS
  Abhydrolase_1 213 ptlvisgtsDplvppkaledlaqllpkkrlv 243
                     + +++gt D  v p + +++++++ +++ v
     KIR60774.1 223 RVAIWHGTADSTVVPANAVESRDQWTNVLGV 253
                    5678899999999998888888888876655 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.9   1.8e-06    0.0046      22     197 ..      63     235 ..      48     268 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.8e-06
                 TTEEEEEEE--TTHHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSB.B.TTEEETTCCCCCCHCHHHHTHHHHHHHHHCSEECCCEEE CS
    Esterase  22 rkypvvylldGltgwdqnfrakelleslaregeiaeviivvvprggessfysdwdlg.arfyenategpgaeayetfltqeLlplldanfrtapdgrav 119
                  + p+v+ll+G t +     a ++++++a++ ++    + +vp+   +      ++    f+   + +  + + e +  ++++ + ++++  + ++ a+
  KIR60774.1  63 ANAPAVVLLHGCTQNAAGYVANSGWQKYADQWKF----ALIVPQQSSA------NQAlTCFNWFTEGDIARGQGEAASIAQMVGYAKTTYGLDGSRIAI 151
                 45799999999999999999999**999999644....4445555444......12224555666667777777889999******************* PP

                 EEETHHHHHHHHHHHCSTTTCCEEEEES--S-CCHCHHHC.......TTCCHHHCC-CCCCHCHHCHTTSEEEEEEEECTTBCCC CS
    Esterase 120 aGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWgq.......eekeawqendpvllakelsaslkalriyldvGtseddl 197
                  G S GG +  ++ + +p++F+  s+ +++ + ++++  +       ++k+  +++d v  a       ++ r+++  Gt ++ +
  KIR60774.1 152 SGLSAGGAMVSVMLAAYPELFAAGSVIAGVPYRCSPPASTsvcqysgVDKTPTAWGDLVRAAY-PGYAGRRPRVAIWHGTADSTV 235
                 *******999999999*****998888888666644444444444444444444444444443.355555555555555555544 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   3.7e-05     0.094      14     128 ..      65     170 ..      60     194 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.7e-05
                    -EEEEEE--TT--SHHHHHHHH.T..T--TTEEEEEE---EEE-GGGTT-EEE-SS-B--SSTTS-B-HHHHHHHHHHHHHHHH.HHHHTT--GGG CS
  Abhydrolase_2  14 qavviflHGlGdsghawaeaakte..aalpnikfifphgpelpvtlnggmrmpaWfdlvglspekkedeagikksaekleelid.aelkkgipssr 106
                    +++v++lHG   ++ +      ++  a+  ++++i+p+ ++    +n+      Wf   +++  +   e      a ++ ++++ a+ ++g++ sr
     KIR60774.1  65 APAVVLLHGCTQNAAGYVANSGWQkyADQWKFALIVPQQSS----ANQALTCFNWFTEGDIARGQ--GE------AASIAQMVGyAKTTYGLDGSR 148
                    67899999999888665555544400444455556665433....44444456799887777766..33......456666676257899****** PP

                    EEEEEETHHHHHHHHHHHT-SS CS
  Abhydrolase_2 107 iiigGFSqGaalalylaltlpk 128
                    i+i G S G+a++     ++p+
     KIR60774.1 149 IAISGLSAGGAMVSVMLAAYPE 170
                    ********99887666666665 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   3.6      0.58   1.5e+03      75      95 ..      11      31 ..       5     113 .. 0.83
   2 ?   13.6   0.5   1.7e-05     0.044      54      90 ..     130     166 ..     100     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.58
                   EEEETHHHHHHHHHHHHHHHT CS
  Abhydrolase_3 75 laGdSaGGnlaaavalrarde 95
                   laG  aG+ laaa+++++ ++
     KIR60774.1 11 LAGAVAGAALAAAALVAVVAA 31
                   8999*********99888876 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.7e-05
                    HHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHH CS
  Abhydrolase_3  54 aalrwlaeqawelgadpsrivlaGdSaGGnlaaaval 90 
                    ++++ +   + ++g+d sri++ G SaGG ++ +++ 
     KIR60774.1 130 SIAQMVGYAKTTYGLDGSRIAISGLSAGGAMVSVMLA 166
                    3444444444699******************999875 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00012       0.3      60     151 ..     102     210 ..      63     250 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
        FSH1  60 eeekseeeeesraWfrkkde...kneyegleesldavkdyikengpfdGiiGFSqGaalaallaslleellkea..........shpslkfailvsGfk 145
                 ++++++++ + + Wf++ d    ++e+ ++ + + + k +    g    i G S G+a+++++++   el+             s p    +  +sG +
  KIR60774.1 102 QQSSANQALTCFNWFTEGDIargQGEAASIAQMVGYAKTTYGLDGSRIAISGLSAGGAMVSVMLAAYPELFAAGsviagvpyrcSPPASTSVCQYSGVD 200
                 33378999999******99555555555555555555555555777778***************99999987547777777774444444444577776 PP

        FSH1 146 leepk....y 151
                  +++     +
  KIR60774.1 201 KTPTAwgdlV 210
                 6655545543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 2987.70
//
Query:       KIR60775.1  [L=299]
Description: multidrug MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-14   53.8   0.7    2.8e-14   52.6   0.7    1.7  1  DUF1731         Domain of unknown function (DUF1731)
    2.6e-09   36.9   0.1      1e-07   31.7   0.0    2.1  2  Epimerase       NAD dependent epimerase/dehydratase family
    1.7e-06   28.0   0.5    3.1e-06   27.2   0.5    1.4  1  NAD_binding_10  NAD(P)H-binding
    0.00093   18.4   0.1     0.0017   17.5   0.1    1.4  1  RmlD_sub_bind   RmlD substrate binding domain
  ------ inclusion threshold ------
      0.029   13.9   0.1      0.042   13.4   0.1    1.2  1  NmrA            NmrA-like family
       0.05   13.0   0.0       0.11   11.9   0.0    1.7  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> DUF1731  Domain of unknown function (DUF1731)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.7   9.5e-18   2.8e-14       1      46 [.     250     295 ..     250     296 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 9.5e-18
     DUF1731   1 vPafalklllGemaellLegqrVlPkrLleaGFqFrypdleeALrd 46 
                 +Pa alk++lG +a+ +L++ rVlP++L++aGF +++pdl +AL +
  KIR60775.1 250 IPALALKVALGGFAQEALTSARVLPAVLTRAGFAYHHPDLPSALHA 295
                 7*******************************************75 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   3.4e-11     1e-07       1     130 [.       3     129 ..       3     137 .. 0.76
   2 ?    3.2   0.0     0.018        53     203     239 ..     189     222 ..     183     225 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 3.4e-11
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S..---HHHHHHSHHHHHHHHTHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAa..vggvaassedpadfieknlqgtln 97 
                 il++Ga+Gf+G+ l+++l + g++v+ l r++ +     ++     + + t ++   ++++  ++dav++lA+  vg+ +++  ++  +  + +  t++
  KIR60775.1   3 ILLAGASGFLGTRLADHLTADGHRVTRLVRRPARTG--DER-----QWNPTAAQLDPAVVA--DADAVVNLAGagVGDKRWNDAYKGLIRSSRVDSTTT 92 
                 899****************************44333..333.....666665554444555..89******5547999999999988888899999999 PP

                 HHHHHH....HHTCTEEEEEEEGGGGTSCSSSSBSTC CS
   Epimerase  98 lleaar....kagvkrllflsSsevYGkdaeqpkeet 130
                 l+  +     +  +  ll+ s + +YG+  +   ee+
  KIR60775.1  93 LAITIAglpaADRPTVLLNSSAVGWYGNTGDRVVEED 129
                 9888884443335558999999*****9887434554 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.018
                 ETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEE CS
   Epimerase 203 lgdgtalRdflyveDvaeaillvlehvdagdkgeiyn 239
                 lg+g+++ +++   D  +a  ++l++   +d  +++n
  KIR60775.1 189 LGSGRQWLPWISMADWLRAARFLLDR---DDVAGAVN 222
                 79***********************9...44444555 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.5     1e-09   3.1e-06       1      76 [.       7      73 ..       7     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1e-09
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHH CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdee 76
                    GA+G  G +l+++l a+ gh+vt lvR+p+++ + e++ + ++ ++d         ++++adaVv  +g+g +d++
      KIR60775.1  7 GASGFLGTRLADHLTAD-GHRVTRLVRRPARTGD-ERQWNPTAAQLDPA-------VVADADAVVNLAGAGVGDKR 73
                    9****************.5*************98.56899999999997.......88899999999888877655 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   5.8e-07    0.0017       1      61 [.       1      61 [.       1      72 [. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5.8e-07
                   EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TTT--TTSHHHHHHHHHHH--SEEEE---- CS
  RmlD_sub_bind  1 mkilvtGanGqlGseLakqlaeeglevlaltreeldltdaeavaellkeakpdvvvnaAAy 61
                   m+il+ Ga+G lG+ La+ l+++g+ v+ l r+ +   d+ + + + ++ +p+vv +a A 
     KIR60775.1  1 MRILLAGASGFLGTRLADHLTADGHRVTRLVRRPARTGDERQWNPTAAQLDPAVVADADAV 61
                   89*******************************9999999999999999999888877664 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.4e-05     0.042       1      33 [.       3      39 ..       3      69 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S....- CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdt....k 33
                Il  Ga+G +G  ++++l+++gh+v  lvR +    +
  KIR60775.1  3 ILLAGASGFLGTRLADHLTADGHRVTRLVRRPartgD 39
                8899**************************9955441 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.7e-05      0.11       1      34 [.       4      37 ..       4     133 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.7e-05
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS- CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssf 34
                   L  G +Gf G  la++L + g++v+ +vrr + +
     KIR60775.1  4 LLAGASGFLGTRLADHLTADGHRVTRLVRRPART 37
                   678**************************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1844.44
//
Query:       KIR60776.1  [L=337]
Description: aldo/keto reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-56  190.7   0.0    3.5e-56  190.6   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.6   0.0     2e-60   3.5e-56       2     293 ..      17     327 ..      16     328 .. 0.93

  Alignments for each domain:
  == domain 1  score: 190.6 bits;  conditional E-value: 2e-60
                   EEEE-SSS-ST............TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.....--SSSTTSSSS- CS
  Aldo_ket_red   2 lglGtwqlgsk...........eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv.....dlrdaeiksgls 82 
                   +g+G w++g++           +e++++e++++++ral+ G+++fDtA  Yg g+se++lG+al+    +r+ev+iatK      +    +   + s
    KIR60776.1  17 IGMGCWAIGGPlwgddgqpygwGEVDDDESIRTVHRALDLGVTLFDTASNYGAGHSERVLGRALAG---RRDEVVIATKFgnrsdEATRLATGTDAS 110
                   88999999988899999999999*******************************************...***********76665444555667888 PP

                   HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHH CS
  Aldo_ket_red  83 keniresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelc 179
                   ++  +esle sl+rLgtd+vDl++lH +d  +p  ++++d+le lv +Gkira+G S  + ++ ++  ++++   +a+q   ++l   +++ +l +c
    KIR60776.1 111 PAYAVESLEGSLRRLGTDHVDLYQLHLNDLPVPAALDLVDTLEGLVAQGKIRAYGWSTDNPASARAF-AEAGAHCSAIQHDQSVL--KDNAAMLTVC 204
                   88**************************************************************988.999999***********..999******* PP

                   HHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------........TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHH CS
  Aldo_ket_red 180 kkkgvpliaysplggGlltgkyqseedkedkeprkdlkrd........ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnie 268
                   ++++ +  + +pl++Glltg+yq ++    ++  +    +          t++   ++ e+++     g +laq al ++l+++ ++ +ipg+++++
    KIR60776.1 205 AELDQASLNRGPLAMGLLTGRYQGSPAALGGDDVRGKAPEwlawftdgRPTPQWAARVAEVRQALTADGRTLAQGALGWLLARSDRTLPIPGCRTVA 301
                   *************************9999888877766669*9999998888888999999999999****************************** PP

                   HHHHHHGGGG-.---HHHHHHHHHHH CS
  Aldo_ket_red 269 qlednldalel.klseeevaeldell 293
                   q+e+n++ l+l +l+++ +ae+++ll
    KIR60776.1 302 QAEENFATLALgPLPADAFAEVERLL 327
                   **********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2479.61
//
Query:       KIR60777.1  [L=119]
Description: MerR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-14   53.1   0.1    7.4e-14   51.6   0.0    1.8  2  MerR_1         MerR HTH family regulatory protein
    8.6e-11   41.4   2.3    1.5e-09   37.4   0.3    2.4  2  MerR           MerR family regulatory protein
    1.1e-08   35.5   1.7    4.6e-07   30.3   1.2    2.1  2  MerR-DNA-bind  MerR, DNA binding
  ------ inclusion threshold ------
       0.14   11.6   0.0       0.17   11.3   0.0    1.1  1  NBP1           Fungal Nap binding protein NBP1


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   1.7e-17   7.4e-14       3      61 ..       6      65 ..       4      72 .. 0.92
   2 ?   -1.4   0.1      0.57   2.5e+03      16      22 ..     111     117 ..      97     119 .] 0.75

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 1.7e-17
                HHHHHHHHTS-HHHHHHHHHHTT.-S-EE-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG CS
      MerR_1  3 igevakilgvtthtlrywekegl.lkpkrteggrryYtdedierLklikyLlkrGltlkg 61
                 +e+a+++g + +tlry+ek gl     rt+ grr +tded+ +L l ++L++ G+++++
  KIR60777.1  6 PSEAARRSGFSLDTLRYYEKIGLlSGVGRTSAGRRVFTDEDLGWLTLFRCLRDTGMPIAE 65
                69*********************667788*****************************98 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.57
                 HHHHHHH CS
      MerR_1  16 tlrywek 22 
                  +r++++
  KIR60777.1 111 KIRFYDT 117
                 5888876 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.3   3.5e-13   1.5e-09       3      38 .]       7      42 ..       6      42 .. 0.97
   2 ?    3.5   0.1     0.014        61      15      23 ..     111     119 .]     109     119 .] 0.86

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 3.5e-13
                HHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSSEEE CS
        MerR  3 gevAeltGvsprtLRyYEreGLipppeRtegGyRlY 38
                +e+A+++G s +tLRyYE++GL+    Rt++G+R++
  KIR60777.1  7 SEAARRSGFSLDTLRYYEKIGLLSGVGRTSAGRRVF 42
                79********************************98 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.014
                 HHHHHHHTT CS
        MerR  15 tLRyYEreG 23 
                 ++R+Y+  G
  KIR60777.1 111 KIRFYDTLG 119
                 8*****987 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.017        77      10      21 ..      10      21 ..       8      23 .. 0.85
   2 !   30.3   1.2     1e-10   4.6e-07       4      64 ..      50     110 ..      47     111 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.017
                   HHHTT--HHHHH CS
  MerR-DNA-bind 10 arrlGFsLdeIr 21
                   arr GFsLd  r
     KIR60777.1 10 ARRSGFSLDTLR 21
                   9*******9765 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 1e-10
                    HHHHHHHHHTT--HHHHHHHHHHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind   4 LkfIrrarrlGFsLdeIrelLalyddrappcqdvrallarklaeleeriaeLqalraeLaa 64 
                    L++ r +r++G++++e+ +  +l   ++++  ++rall r+++++e +++ Lq+  ++L++
     KIR60777.1  50 LTLFRCLRDTGMPIAEMCRYAELARAGDHTTGERRALLVRHAERVEDQMRLLQRQYDHLRE 110
                    777899*****************999******************************99985 PP

>> NBP1  Fungal Nap binding protein NBP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.8e-05      0.17     167     205 ..      75     113 ..      66     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.8e-05
        NBP1 167 rgrssnkserrvslrnnnleeDqvvlLqkkikklesklk 205
                  g + + ++r   +r+ +  eDq++lLq+++++l +k+ 
  KIR60777.1  75 AGDHTTGERRALLVRHAERVEDQMRLLQRQYDHLREKIR 113
                 4444555555577899999*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 973.31
//
Query:       KIR60778.1  [L=173]
Description: damage-inducible protein DinB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-21   75.0   8.5    1.1e-20   74.5   8.5    1.2  1  DinB_2    DinB superfamily


Domain annotation for each model (and alignments):
>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   8.5   5.9e-25   1.1e-20       1     128 []      12     163 ..      12     163 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 5.9e-25
      DinB_2   1 qlerararllalledlteeelnrqp.........................spgkwsiawllaHlgnveelllerlrgeeaprpgldpltppsaaealay 74 
                 q++ ++a ++ +le+l ++++ ++p                         + ++++iawl++H+g+++  + e+l g++ p  +++ ++p++ a ++++
  KIR60778.1  12 QFDLTWALFEYHLERLEPDDFLWEPaahcwtvrpgpagtwvpdwaqtepePVPVPTIAWLTWHIGWWWSSAGEHLQGRPVP-QHTEVAWPGAGAVTIEW 109
                 799*******************************************99998999***********************7766.89*************** PP

      DinB_2  75 laevrarllallealtdadldrpltaphpglgkltlgdvllfvlqHeqhHleqi 128
                 l+++r+r+l  l +l dadldr + +p+p  + +t++++l++v+++++++ ++i
  KIR60778.1 110 LRDLRRRWLGHLGGLGDADLDRVVAYPWPADAGHTVAHLLGWVNAELMKNVAEI 163
                 ***********************************************9988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      147  (0.00819901); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1179.14
//
Query:       KIR60779.1  [L=75]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-18   65.5   0.0    2.8e-18   65.3   0.0    1.0  1  GntR      Bacterial regulatory proteins, gntR family
     0.0092   16.3   0.0     0.0096   16.2   0.0    1.2  1  Rrf2      Transcriptional regulator
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.022   14.4   0.0    1.2  1  HTH_41    Helix-turn-helix domain
      0.068   13.4   0.0      0.088   13.0   0.0    1.2  1  PaaX      PaaX-like protein


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   6.2e-22   2.8e-18       4      64 .]       9      69 ..       6      69 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 6.2e-22
                HHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  4 qvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                +++++Lr++I sg+l+pGdkLPs  +L++e gVs+ +vR A+  L+ +g+ve  +g+G+fV
  KIR60779.1  9 HIADQLRDQIASGQLAPGDKLPSTAQLREEHGVSAGVVRHAILVLQMQGWVEGVHGVGVFV 69
                89**********************************************************9 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.1e-06    0.0096      21      64 ..      25      66 ..       9      75 .] 0.88

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.1e-06
                STCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TC CS
        Rrf2 21 eeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGG 64
                ++++  s++++ e++++s+ ++++ +  L+ +g+v+ v G+  G
  KIR60779.1 25 PGDKLPSTAQLREEHGVSAGVVRHAILVLQMQGWVEGVHGV--G 66
                667778999*******************************9..4 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   4.9e-06     0.022       3      36 ..      26      59 ..      24      61 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.9e-06
      HTH_41  3 GdRlktIeelakeleLSvGlvQkALklLeddkai 36
                Gd+l++  +l +e ++S G v  A+  L+ ++ +
  KIR60779.1 26 GDKLPSTAQLREEHGVSAGVVRHAILVLQMQGWV 59
                9************************999988766 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     2e-05     0.088      27      55 ..      33      61 ..      19      65 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2e-05
        PaaX 27 irllaelGiseslvRaalsRlakaGwlvr 55
                 +l +e G+s+++vR a+  l+ +Gw+ +
  KIR60779.1 33 AQLREEHGVSAGVVRHAILVLQMQGWVEG 61
                6788999*******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 599.93
//
Query:       KIR60780.1  [L=156]
Description: excisionase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-13   49.9   0.0    4.5e-13   49.2   0.0    1.4  1  HTH_17     Helix-turn-helix domain
     0.0036   17.0   0.7      0.017   14.9   0.1    2.2  2  HTH_8      Bacterial regulatory protein, Fis family
     0.0092   15.9   0.7      0.051   13.5   0.1    2.4  3  HTH_Crp_2  Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.013   15.5   0.2      0.049   13.6   0.1    2.2  2  HTH_37     Helix-turn-helix domain
      0.014   15.1   0.0      0.055   13.3   0.0    2.0  2  HTH_23     Homeodomain-like domain
      0.022   15.1   0.7      0.062   13.6   0.7    2.1  1  HTH_31     Helix-turn-helix domain
      0.046   13.9   0.0       0.12   12.6   0.0    1.8  1  AbiEi_4    Transcriptional regulator, AbiEi antitoxin
      0.056   13.2   0.4       0.14   12.0   0.1    1.9  2  MerR       MerR family regulatory protein
       0.11   13.1   0.0       0.23   12.1   0.0    1.6  1  DUF134     Protein of unknown function  DUF134


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   2.2e-16   4.5e-13       1      50 [.      76     125 ..      76     126 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 2.2e-16
      HTH_17   1 lltveEaAelLgvsrstvyrlirrgelpaakiGrrwriprsdleewlekr 50 
                 +lt++EaA+lL++sr t+ rl+++ge+p++ +Gr++r+   d+ ++ e+ 
  KIR60780.1  76 MLTTQEAADLLNISRPTLVRLLSDGEIPHTMRGRHRRVMLRDILDYQERT 125
                 79*************************9999****************985 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.52     1e+03      16      24 ..      27      35 ..      26      35 .. 0.84
   2 !   14.9   0.1   8.6e-06     0.017      22      37 ..      80      95 ..      78      98 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.52
                HTTT-HHHH CS
       HTH_8 16 rtgGnkskA 24
                r+ Gn+++A
  KIR60780.1 27 RSAGNRARA 35
                6789***98 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 8.6e-06
                HHHHHHHTS-HHHHHH CS
       HTH_8 22 skAArlLGisRrtLyr 37
                ++AA+lL+isR tL r
  KIR60780.1 80 QEAADLLNISRPTLVR 95
                79************87 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         1   2.1e+03      39      49 ..      20      30 ..      16      50 .. 0.52
   2 !   13.5   0.1   2.6e-05     0.051      22      44 ..      77      99 ..      59     119 .. 0.84
   3 ?   -1.2   0.0         1     2e+03      35      52 ..     130     147 ..     129     153 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1
                HHHHHHHHHTT CS
   HTH_Crp_2 39 srilseLkreg 49
                 r  +eL+ +g
  KIR60780.1 20 ARFVQELRSAG 30
                44445555444 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.6e-05
                HHHHHHHHHTTSSHHHHHHHHHH CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrilse 44
                lt +e A++l+++r t+ r+ls+
  KIR60780.1 77 LTTQEAADLLNISRPTLVRLLSD 99
                899******************97 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1
                 HHHHHHHHHHHHHTTSEE CS
   HTH_Crp_2  35 retvsrilseLkreglis 52 
                 r+t+ r+  e +++gl +
  KIR60780.1 130 RQTLDRMTVEAEEDGLYD 147
                 899999999999999977 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.6   5.2e+03      64      79 ..      55      70 ..      55      71 .. 0.83
   2 ?   13.6   0.1   2.5e-05     0.049      31      52 ..      76      97 ..      65     128 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.6
                HHHHHHHTTEEEEEEE CS
      HTH_37 64 LlnlltalGqkveivv 79
                L++++tal   + i++
  KIR60780.1 55 LRDVVTALSEGLAISI 70
                7899999998888887 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.5e-05
                T--HHHHHHHHT--HHHHHHHH CS
      HTH_37 31 elsqseaaqllgiaqPkvsrll 52
                 l+++eaa ll+i++P ++rll
  KIR60780.1 76 MLTTQEAADLLNISRPTLVRLL 97
                59******************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.8e-05     0.055      18      39 ..      77      98 ..      70      99 .. 0.90
   2 ?   -1.6   0.1       1.3   2.6e+03      32      32 ..     131     131 ..     109     148 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.8e-05
      HTH_23 18 lsvreIAreLgvsrrTvyrwlk 39
                l+++e+A++L++sr T+ r l+
  KIR60780.1 77 LTTQEAADLLNISRPTLVRLLS 98
                5899************999875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.3
      HTH_23  32 r 32 
                 +
  KIR60780.1 131 Q 131
                 3 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.7   3.1e-05     0.062       2      42 ..      19     103 ..       4     133 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.1e-05
      HTH_31   2 LGalLralRera.............................................GLsqeevAerlgvsestlsrlEqGrrgrp 42 
                 L++++++lR +                                               L+ +e+A++l++s+ tl rl +  + +p
  KIR60780.1  19 LARFVQELRSAGnrararlvgpdgseieipdelygvlrdvvtalseglaisiaphntMLTTQEAADLLNISRPTLVRLLSDGE-IP 103
                 5666667766556667788888888888888888888888888888888888888888*********************9776.46 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     6e-05      0.12      13      38 ..      76     102 ..      67     113 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6e-05
     AbiEi_4  13 lfttrelea.aGispsalrrLvrkGwL 38 
                  +tt+e++  ++is+ +l rL++ G++
  KIR60780.1  76 MLTTQEAADlLNISRPTLVRLLSDGEI 102
                 68***********************97 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         6   1.2e+04      29      35 ..      26      32 ..      24      33 .. 0.74
   2 ?   12.0   0.1     7e-05      0.14       1      35 [.      78     110 ..      78     113 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 6
                EETTTSS CS
        MerR 29 eRtegGy 35
                 R++g++
  KIR60780.1 26 LRSAGNR 32
                5888886 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 7e-05
                 EHHHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSS CS
        MerR   1 tIgevAeltGvsprtLRyYEreGLipppeRtegGy 35 
                 t+ e+A+l+++s  tL ++ + G ip+  R    +
  KIR60780.1  78 TTQEAADLLNISRPTLVRLLSDGEIPHTMRGR--H 110
                 788**********************9888854..4 PP

>> DUF134  Protein of unknown function  DUF134
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00011      0.23      32      74 ..      57     100 ..      25     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
      DUF134  32 kvaisldeleairlvdyedl.kqeeaaklmGiskatlwrlltea 74 
                  v+ +l e  ai +  ++ + + +eaa+l+ is++tl rll+++
  KIR60780.1  57 DVVTALSEGLAISIAPHNTMlTTQEAADLLNISRPTLVRLLSDG 100
                 488889999999999887763789****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.96
# Mc/sec: 490.50
//
Query:       KIR60781.1  [L=305]
Description: F420-dependent oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-39  136.3  23.7    2.9e-39  135.3  21.5    2.1  2  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3  21.5   1.6e-43   2.9e-39      21     243 ..      12     248 ..       2     259 .. 0.87
   2 ?    0.7   0.2     0.016   2.8e+02     290     313 ..     260     284 ..     243     285 .. 0.67

  Alignments for each domain:
  == domain 1  score: 135.3 bits;  conditional E-value: 1.6e-43
  Bac_luciferase  21 slrylvelaraaEelGfdavwvaehhggpggaldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhlsgGRfglglgtggpaveer 115
                     +++  ++lar+aE++Gfda+++a+h g      d+f+ laa+a++T++i+lg+ v++l +r+P++lA ++atLd +sgGR++lg+g+g+ ++e r
      KIR60781.1  12 DAAGWLDLARRAEAAGFDALLAADHPGS---CGDPFVALAAAASVTTTIGLGSYVSNLGVREPMLLATAVATLDVVSGGRARLGVGAGHTPAEWR 103
                     6777899*******************84...49************************************************************** PP

  Bac_luciferase 116 rfGv...dhderyarlrEfvevlrrlwrgeevdfeGeffsv.kgalllprpgqgpiPvyvaaaspaglelaarhadglllag............. 193
                     + G+   d + r++r   + e++r+l+ geev+ +   ++v +  l +prp+q+++P+ v+ ++   l++a+ had++ lag             
      KIR60781.1 104 AVGRerpDVAGRVRRCVAAAEAVRALLDGEEVTVDSPELTVrAARLESPRPVQERVPLTVGTSNSTLLRWAGAHADVVGLAGfgrtlddghrhea 198
                     **************************************9**7777889**********************************9999999444444 PP

  Bac_luciferase 194 .eppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraeara 243
                       + ++++++++r+++gaa + r+p +++ ++++ ++ +d e+ A ++a a
      KIR60781.1 199 rWRADQIEAQLARVAEGAASRARPP-ALEALVQTVTVTDDAEAVAAQRAVA 248
                     4444555555555555555566644.7999999999999999988888744 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.016
  Bac_luciferase 290 atalvGtpeqvaerlaa.yaeagvd 313
                      ++l+Gt++++++++a+  ++ gv+
      KIR60781.1 260 PFVLIGTEDEIVAAVAEhERRWGVT 284
                     3556**********99966666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2061.29
//
Query:       KIR60782.1  [L=441]
Description: low temperature requirement protein A [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-79  265.8  39.4    7.5e-79  265.5  39.4    1.0  1  LtrA      Bacterial low temperature requirement A protein (Lt


Domain annotation for each model (and alignments):
>> LtrA  Bacterial low temperature requirement A protein (LtrA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.5  39.4   4.2e-83   7.5e-79       1     353 []      21     398 ..      21     398 .. 0.96

  Alignments for each domain:
  == domain 1  score: 265.5 bits;  conditional E-value: 4.2e-83
        LtrA   1 rvswlELFFDLvfVvavtqlthalahdltgegllrflllffavwwaWvgftwlanrfdtddvvvrllllvqmaavlvlalsipeafeerg......lvf 93 
                 rv+++E+FFDLvfV+ +  + +a a+d+tg+ llr +l+++++ww+Wv ++++a+r++  +++v ++++v+maa++ +al++p++++ rg      l++
  KIR60782.1  21 RVDRFEVFFDLVFVFSFFVIVRATATDITGHTLLRSFLVLAVLWWVWVIHSVVATRVRLGEGFVPVVMVVGMAALFAFALTVPQTIAARGqglagpLTV 119
                 7999*********************************************************************************************** PP

        LtrA  94 alayvvmrlvlvlqylraaradpklsarrlarvyaagllisavlwlagallpgs.........arlvlwlvallielllvPllarkrt.tpvhaeHlaE 182
                 a++y+v+r+v++  y++++r++p + +r+l+++ a+ l++s+vl+la+al+p +         +r +lw+v+++ ++ ++ lla +     ++aeH++E
  KIR60782.1 120 AVSYLVIRVVHLWIYWHVMRDEPVE-SRHLMKL-APELVLSTVLLLAAALVPAQfadpdagalVRDGLWAVVVVSQY-ATGLLAGTGGgGVISAEHWTE 215
                 ***********************85.7*****9.9******************9***********************.67788888845********** PP

        LtrA 183 RygLfvIIaLGEsvva..lgaglseqelsvevllaavlglvlaaalwwlYFdvdaaaaehaltsar...rarlarsaygylhllivagiillavglell 276
                 Ry L+++IaLGEsv++  +g+ l++  + ++++ aa +++vlaa+lwwl+Fdv  +aa+ al++ar   r  lar+ay+yl l+++ g+il+++g e++
  KIR60782.1 216 RYDLILMIALGESVISvgIGTNLASRSVGWQAITAAGIAIVLAATLWWLHFDVVGPAARIALHAARgrtRVGLARDAYAYLFLPMITGLILFSLGAEEM 314
                 ****************55666667777**************************9999999999999988999*************************** PP

        LtrA 277 l.......ahpeelldlaaalllfggvalfllgllllkrvllgsvslsrlvllllllallalalvlaallalallalvllllaa 353
                 l        + ee l+++ + llfggva++l+g +l++ ++l++++++r  ++lll+al++++  ++al+al+ll+ v+++l+a
  KIR60782.1 315 LnllgqphLPLEESLHGPGIPLLFGGVACYLAGDMLFQLRTLHTFTWARAGTVLLLVALIPVGGRMPALAALVLLTGVCVGLVA 398
                 ****9998566788******************************************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 2664.82
//
Query:       KIR60783.1  [L=614]
Description: dihydrolipoamide acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-71  239.2   0.0    5.4e-71  238.7   0.0    1.1  1  2-oxoacid_dh     2-oxoacid dehydrogenases acyltransferase (ca
    9.5e-42  140.7   9.7    6.9e-21   73.9   0.9    3.1  3  Biotin_lipoyl    Biotin-requiring enzyme
    4.3e-15   55.8   0.9    1.7e-14   53.8   0.4    2.5  2  E3_binding       e3 binding domain
     0.0003   20.7   5.8      0.064   13.2   0.2    3.4  3  GCV_H            Glycine cleavage H-protein
     0.0012   18.6   0.9        1.6    8.6   0.0    3.6  3  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
      0.025   14.4   1.2         12    5.6   0.0    3.5  4  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
      0.025   14.2   0.2        8.6    6.1   0.0    3.6  4  PYNP_C           Pyrimidine nucleoside phosphorylase C-termin
      0.052   14.2   9.7        5.3    7.8   0.5    4.3  4  HlyD_3           HlyD family secretion protein
        3.4    7.8   9.5         10    6.2   0.9    2.8  2  Stomoxyn         Insect antimicrobial peptide, stomoxyn


Domain annotation for each model (and alignments):
>> 2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.7   0.0   2.7e-74   5.4e-71       4     226 ..     377     604 ..     374     611 .. 0.96

  Alignments for each domain:
  == domain 1  score: 238.7 bits;  conditional E-value: 2.7e-74
                   XXXXXXXXXXXXXXXXXXXXX.XXXEEEEEEEEE-HHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHH-GGGG-EE.EESEEEE--SS--EE CS
  2-oxoacid_dh   4 eervplsgirkaiakrlteskqeiphftlsdevdvtallelrkelkekeakeekakltlldflikavalAlkefPelnasvdeeekeivvkkhvniG 100
                    ++++l +ir++iakr+++s++e++++t+++evdvt++ +lr++ k+++  ++ +kl++l+f++ a++ Al+ +P++nas+d ++ +i+++++ ++G
    KIR60783.1 377 GTTEKLPRIRATIAKRMQQSLHEMAQLTTVVEVDVTKVAKLRARAKDSFLARHGVKLSFLPFFALAAVEALQTYPIVNASMDLDAGTITYPDAEHLG 473
                   67899********************************************98888******************************************* PP

                   EE--------EEEE--GGG--HHHHHHHHHHHHHHHTTT---GGGTSS-SEEEE---------------TT-SEEEEE---.B--TTSTT-.....H CS
  2-oxoacid_dh 101 vAvatprGLlvPviknadkkslleiakelkelaekaregklkpedleggtftisNlGmlGvtsftPiinppqvaIlgvgrikerpvvkege.....l 192
                   +Av+t+rGL+vPvi+ a +++l  +ak++++lae++r +k++p+++ g+tft++N G+ G  + tPi++ pq+a+lg g++ +rpvv+++      +
    KIR60783.1 474 IAVDTERGLMVPVIHGAGDLNLGGLAKRIADLAERTRTNKISPDEIAGATFTLTNTGSRGALFDTPIVPSPQSAMLGTGAVVKRPVVVNDPelgevV 570
                   ***************************************************************************************555559**** PP

                   T---EEEEEEEEETTT--HHHHHHHHHHHHHTT- CS
  2-oxoacid_dh 193 vvrkvmtlslsaDHRvidGaeaarFlntlkklle 226
                   +vr++++l +s+DHR+idGa+aarFl ++k+ le
    KIR60783.1 571 AVRSMVYLAMSYDHRLIDGADAARFLVAVKERLE 604
                   ********************************99 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.9   3.5e-24   6.9e-21       3      73 .]       5      76 ..       3      76 .. 0.98
   2 !   71.1   1.1   2.5e-23   4.9e-20       2      72 ..     138     209 ..     137     210 .. 0.96
   3 ?   -2.2   0.0       1.9   3.8e+03      23      49 ..     328     354 ..     326     355 .. 0.84

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 3.5e-24
                   EEESSSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  3 iksPmiGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73
                   +++P +Gesv+eg v+++l+++Gd+V+ +++l+ev+++K+ +ei++p+aGv++ i+v e++t evg+ la+i
     KIR60783.1  5 VTMPRLGESVTEGtVTRWLKQEGDTVEVDEPLLEVSTDKVDTEIPSPAAGVLSRIVVGEDETAEVGSELAVI 76
                   89*******************************************************************987 PP

  == domain 2  score: 71.1 bits;  conditional E-value: 2.5e-23
                    EEEESSSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl   2 eiksPmiGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 72 
                     +k+P++Gesv+eg v+++l++vGd+V+ +++l+ev+++K+ +ei++p+aG++ ei+v e++t  vg  la+
     KIR60783.1 138 PVKMPALGESVTEGtVTRWLKQVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIKVAEDETAAVGADLAV 209
                    59***************************************************************9988875 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.9
                    TTCEE-TTSEEEEEECTTEEEEEEBSS CS
  Biotin_lipoyl  23 vGdkVkagqvlaeveamKmemeieapk 49 
                    vG+ + + +vl   e  K+    +ap+
     KIR60783.1 328 VGGRIRKQDVLEAAEKAKAAKAAPAPA 354
                    7999******99999999988777775 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.4   8.7e-18   1.7e-14       3      36 .]     305     338 ..     304     338 .. 0.97
   2 ?   -2.8   0.0       4.2   8.4e+03      12      28 ..     510     533 ..     510     534 .. 0.74

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 8.7e-18
                 E-HHHHHHHHHCT--TTTS---CTTTBE-HHHHC CS
  E3_binding   3 AsPaaRklAkelGidLsdvkGtGpgGRItkeDVl 36 
                  +P++RklA e+G+dL++vkGtG gGRI+k+DVl
  KIR60783.1 305 VTPLVRKLAGEHGVDLASVKGTGVGGRIRKQDVL 338
                 69*******************************7 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.2
                 HHCT--TTTS--.......-CTTT CS
  E3_binding  12 kelGidLsdvkG.......tGpgG 28 
                 + + i++++++G       tG +G
  KIR60783.1 510 RTNKISPDEIAGatftltnTGSRG 533
                 568999999998767666677665 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1     0.005        10      35      70 ..      20      55 ..       3      67 .. 0.86
   2 !   13.2   0.2   3.2e-05     0.064      36      76 ..     155     195 ..     137     205 .. 0.87
   3 ?    2.5   0.1     0.064   1.3e+02      24      67 ..     311     354 ..     299     356 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.005
                EEE---TT-EE-TT-EEEEEEESS-EEEEE-SSSEE CS
       GCV_H 35 fvelpevgtkvkkgeslaavEsvKaasevyapvsGe 70
                   l+++g++v+ +e+l  v + K  +e+++p  G 
  KIR60783.1 20 TRWLKQEGDTVEVDEPLLEVSTDKVDTEIPSPAAGV 55
                55699****************************996 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 3.2e-05
                 EE---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE-G CS
       GCV_H  36 velpevgtkvkkgeslaavEsvKaasevyapvsGevvevNe 76 
                   l++vg++v+ +e+l  v + K  +e+++pv G+++e+  
  KIR60783.1 155 RWLKQVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIKV 195
                 5699********************************99865 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.064
                 HHHHHHH-SEEEEE---TT-EE-TT-EEEEEEESS-EEEEE-SS CS
       GCV_H  24 dfaqeelgdvvfvelpevgtkvkkgeslaavEsvKaasevyapv 67 
                 ++a e+  d+ +v+   vg ++ k++ l a E  Kaa   +ap 
  KIR60783.1 311 KLAGEHGVDLASVKGTGVGGRIRKQDVLEAAEKAKAAKAAPAPA 354
                 56677778999999999********************9999885 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0008       1.6      10      39 ..      16      45 ..      10      66 .. 0.90
   2 !    5.2   0.1    0.0096        19      10      38 ..     150     178 ..     146     182 .. 0.86
   3 ?    1.0   0.0      0.19   3.8e+02       4      21 ..     181     198 ..     178     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0008
  Biotin_lipoyl_2 10 sGrVaqlnVkdGqrVkaGdvLaelDsralq 39
                      G+V++++ ++G+ V+    L+e  +++ +
       KIR60783.1 16 EGTVTRWLKQEGDTVEVDEPLLEVSTDKVD 45
                     7********************999887765 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0096
  Biotin_lipoyl_2  10 sGrVaqlnVkdGqrVkaGdvLaelDsral 38 
                       G+V++++ + G+ V+    L+e  +++ 
       KIR60783.1 150 EGTVTRWLKQVGDTVEVDEPLLEVSTDKV 178
                      7*******************999887765 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.19
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdG 21 
                      +I +pv+G++ ++ V + 
       KIR60783.1 181 EIPSPVAGTLLEIKVAED 198
                      6889**********9886 PP

>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0062        12      81     115 ..      17      51 ..      11      58 .. 0.83
   2 ?    4.0   0.0     0.019        38      81     114 ..     151     184 ..     144     191 .. 0.83
   3 ?    2.5   0.0     0.059   1.2e+02       2      23 ..     181     202 ..     180     219 .. 0.83
   4 ?   -3.6   0.0       4.4   8.9e+03      24      49 ..     546     570 ..     544     575 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0062
                 TTTEEES----SEE-SEEEEEEE-HHHHGGGSS-- CS
  PTS_EIIA_1  81 gegFellvkegdkVkagdklvevdleaikkagyst 115
                 g++ + l +egd+V+  ++l+ev+ ++++ +  s+
  KIR60783.1  17 GTVTRWLKQEGDTVEVDEPLLEVSTDKVDTEIPSP 51 
                 566677889******************99876665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.019
                 TTTEEES----SEE-SEEEEEEE-HHHHGGGSS- CS
  PTS_EIIA_1  81 gegFellvkegdkVkagdklvevdleaikkagys 114
                 g++ + l + gd+V+  ++l+ev+ ++++ +  s
  KIR60783.1 151 GTVTRWLKQVGDTVEVDEPLLEVSTDKVDTEIPS 184
                 5566677899*****************9987655 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.059
                 S-----SEEEEEGGGSSSHHHH CS
  PTS_EIIA_1   2 eilspvsGevvpleevpDevfa 23 
                 ei spv+G++++++  +De+ a
  KIR60783.1 181 EIPSPVAGTLLEIKVAEDETAA 202
                 688***************9976 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 4.4
                 T-TTSEEEEEEE-SSEEEES--EEEE CS
  PTS_EIIA_1  24 ekmlGdGvaiepsegkvvapvdGkve 49 
                 + mlG G++++     v  p  G+v+
  KIR60783.1 546 SAMLGTGAVVKR-PVVVNDPELGEVV 570
                 578999998876.2344445555554 PP

>> PYNP_C  Pyrimidine nucleoside phosphorylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.027        54      37      57 ..      23      43 ..      21      53 .. 0.84
   2 ?    6.1   0.0    0.0043       8.6      37      57 ..     157     177 ..     154     184 .. 0.85
   3 ?   -3.5   0.1       4.3   8.6e+03      19      29 ..     329     339 ..     329     341 .. 0.82
   4 ?   -1.4   0.0      0.92   1.8e+03       2      20 ..     444     462 ..     443     477 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.027
                S--TT-EEBTTSEEEEEEESS CS
      PYNP_C 37 hkklGdkVkkGeplatiYank 57
                 k+ Gd V+ +epl+ + ++k
  KIR60783.1 23 LKQEGDTVEVDEPLLEVSTDK 43
                5889***********986665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0043
                 S--TT-EEBTTSEEEEEEESS CS
      PYNP_C  37 hkklGdkVkkGeplatiYank 57 
                  k++Gd V+ +epl+ + ++k
  KIR60783.1 157 LKQVGDTVEVDEPLLEVSTDK 177
                 699***********9986665 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 4.3
                 TSBSSTTS--- CS
      PYNP_C  19 AGRakkeDpid 29 
                 +GR +k+D ++
  KIR60783.1 329 GGRIRKQDVLE 339
                 79****99875 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.92
                 EEEE-HHHHHHHHHHTTTS CS
      PYNP_C   2 vseidareiGlaaveLGAG 20 
                 v+++++  i  a+++L AG
  KIR60783.1 444 VEALQTYPIVNASMDLDAG 462
                 6788888899999999998 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.5    0.0027       5.3       6      47 ..      15      53 ..      12      78 .. 0.80
   2 ?    6.1   0.1    0.0091        18       6      33 ..     149     176 ..     146     183 .. 0.86
   3 ?    2.9   0.1     0.087   1.7e+02       2      30 ..     182     210 ..     181     219 .. 0.90
   4 ?   -3.2   0.0       7.2   1.4e+04      38      61 ..     385     409 ..     380     421 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0027
      HlyD_3  6 vdGvvvelnveegevvqagdelleiippdtllveakvpaadl 47
                  G+v+ +  +eg+ v+  ++lle+   d  +v+ ++p+ ++
  KIR60783.1 15 TEGTVTRWLKQEGDTVEVDEPLLEVST-D--KVDTEIPSPAA 53
                579**********************93.3..46666666655 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0091
      HlyD_3   6 vdGvvvelnveegevvqagdelleiipp 33 
                   G+v+ +  ++g+ v+  ++lle+  +
  KIR60783.1 149 TEGTVTRWLKQVGDTVEVDEPLLEVSTD 176
                 579**********************854 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.087
      HlyD_3   2 lrApvdGvvvelnveegevvqagdellei 30 
                 + +pv+G++ e++v e e  + g+ l+ +
  KIR60783.1 182 IPSPVAGTLLEIKVAEDETAAVGADLAVV 210
                 569**********************9987 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 7.2
      HlyD_3  38 veakvpaadlgsik.kkgqkvtlkl 61 
                 ++a+++ +  +s++  ++ ++ +++
  KIR60783.1 385 IRATIAKRMQQSLHeMAQLTTVVEV 409
                 6677777777887733333333333 PP

>> Stomoxyn  Insect antimicrobial peptide, stomoxyn
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.9    0.0051        10      20      35 ..      65      80 ..      62      87 .. 0.92
   2 ?    4.9   2.1     0.014        27      15      37 ..     194     216 ..     191     218 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0051
                HHHTHHHHTTTTGGGT CS
    Stomoxyn 20 ETAHVAKDaAViAGSG 35
                ETA V  + AViAG G
  KIR60783.1 65 ETAEVGSELAVIAGEG 80
                9*************99 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.014
                 HHHHHHHHTHHHHTTTTGGGTHH CS
    Stomoxyn  15 KHTiSETAHVAKDaAViAGSGAA 37 
                 K    ETA V  D AV+  +GAA
  KIR60783.1 194 KVAEDETAAVGADLAVVGTAGAA 216
                 55557*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 3907.08
//
Query:       KIR60784.1  [L=463]
Description: dihydrolipoamide dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-65  221.4   5.3    1.7e-65  221.1   5.3    1.1  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    3.4e-26   91.6   0.1    7.8e-26   90.5   0.1    1.7  1  Pyr_redox_dim    Pyridine nucleotide-disulphide oxidoreductas
    7.4e-18   64.9   6.7    1.2e-17   64.2   0.5    2.8  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
    1.2e-10   41.1   4.3    1.1e-07   31.4   0.1    2.5  2  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
    1.8e-08   33.9   5.1    1.6e-07   30.8   1.6    2.4  2  GIDA             Glucose inhibited division protein A
    2.5e-06   26.4   6.4      0.027   13.2   0.0    3.4  4  HI0933_like      HI0933-like protein
    2.7e-06   27.0   1.9    5.3e-06   26.0   1.9    1.5  1  FAD_oxidored     FAD dependent oxidoreductase
    9.8e-05   22.3   1.5    0.00061   19.7   0.1    2.2  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
    0.00036   19.8   0.8    0.00036   19.8   0.8    2.6  4  FAD_binding_2    FAD binding domain
     0.0004   20.6   4.2      0.089   13.0   1.5    2.7  2  NAD_binding_8    NAD(P)-binding Rossmann-like domain
    0.00085   18.7   3.5      0.037   13.3   0.1    2.4  2  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
     0.0035   17.0   3.8     0.0035   17.0   3.8    4.0  4  DAO              FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.018   14.3   0.1       0.11   11.7   0.0    2.1  3  Amino_oxidase    Flavin containing amine oxidoreductase
       0.03   13.4   6.5        2.7    6.9   1.0    3.2  3  Lycopene_cycl    Lycopene cyclase protein
      0.064   12.6   0.3       0.66    9.3   0.0    2.2  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
       0.11   12.4   0.0       0.23   11.5   0.0    1.5  1  Methyltransf_17  S-adenosyl-L-methionine methyltransferase
        2.3    7.0   5.8       0.14   11.0   0.2    1.8  2  Trp_halogenase   Tryptophan halogenase
        7.7    5.7   7.0        9.4    5.4   0.3    2.7  3  FAD_binding_3    FAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.1   5.3   1.8e-68   1.7e-65       1     294 []       9     322 ..       9     322 .. 0.97

  Alignments for each domain:
  == domain 1  score: 221.1 bits;  conditional E-value: 1.8e-68
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH........................HHHHCHHHHCCCCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias........................evvkklnqgielll 71 
                  +d+v++GgG +G+a+al++ q g+ v+lve   l+gtcl++gc+++kall++ae a+  +                         v+++l +g++ +l
   KIR60784.1   9 FDIVILGGGSGGYATALRAVQLGLTVALVEkgkLGGTCLHNGCIPTKALLHAAEIADSTReseqfgvkaelvgidmagvnaykdGVISRLYKGLQGML 106
                  59***************************9999***********************98889***********************99*******99999 PP

                  CCT.CEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EE CS
                  xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  72 gee.vvkidpgkkkvklekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkev 168
                  + + ++++ +g+++++  + +e d+++++  ++vlA+Gs ++ l  pG+    +++ r+++s+ al l+ +p +++v GgG+iGvE+A++++++g++v
   KIR60784.1 107 KGNkAITVVEGHGRLVAPNAVEVDGKRYTGRNVVLASGSYAKSL--PGL---EVDGERIITSDHALTLDRVPSSAIVLGGGVIGVEFASVWKSFGVDV 199
                  8777***********************************99998..888...344559**************************************** PP

                  EEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTEEE--TTSB CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 169 tlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelle.eklglelderggivvdeflr 265
                  t++ea++rl+ a d+e s+ale+a++k+++++k+g+ ++++++ ++ ++v+   ge+++a+l++vavG+ p+t+ l+ e++g+ + +rg++++de+lr
   KIR60784.1 200 TIIEALPRLVAAEDEESSKALERAFRKRKINFKVGKPFEKVEKTENGVKVTIAGGETVEAELLLVAVGRGPRTADLGyEEQGVRM-DRGYVLTDERLR 296
                  *************************************************************************************.************ PP

                  ESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 266 tnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  t vp++ya+GD++    g++la+   qqG
   KIR60784.1 297 TGVPNVYAVGDIV---PGLQLAHRGFQQG 322
                  *************...********99998 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.1   7.9e-29   7.8e-26       1     109 [.     342     450 ..     342     451 .. 0.96

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 7.9e-29
                    BEEEEESSSEEEEEES-HHHHHHHHSG..EEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHT CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagie..ikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedlad 94 
                    ip+v+++dpe+asvGlte++Ak+++++  ik+++ ++  ng++++ + t gf+Klv + ++g v+G+h+vG ++gel+ e++++ ++++  +++a+
     KIR60784.1 342 IPRVTYCDPELASVGLTEAKAKEQYGAdkIKTYNYNLGGNGKSQILK-TAGFIKLV-RVEDGPVVGVHMVGARVGELVGEAQLIYNWEAYPAEVAQ 435
                    7*************************999*****************6.9******5.667************************************ PP

                    SBSSSSSTGGGGHCH CS
  Pyr_redox_dim  95 tihihPtlsealkea 109
                     +h+hPt +eal ea
     KIR60784.1 436 LVHAHPTQNEALGEA 450
                    ***********9987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   1.0      0.16   1.6e+02       2      31 ..      11      40 ..      10      43 .. 0.92
   2 !   64.2   0.5   1.2e-20   1.2e-17       2      78 ..     176     251 ..     175     256 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.16
                EEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvvers 31
                +v++GgG  g   A  + +lg  V +ve +
  KIR60784.1 11 IVILGGGSGGYATALRAVQLGLTVALVEKG 40
                8*************************9975 PP

  == domain 2  score: 64.2 bits;  conditional E-value: 1.2e-20
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgvesvkl 78 
                 ++v+GgG+ig+E+A++++ +g +Vt++e+ ++l  ++Dee sk+l++ ++k++i++  ++  e++e++e+gv+ v++
  KIR60784.1 176 AIVLGGGVIGVEFASVWKSFGVDVTIIEALPRLVAAEDEESSKALERAFRKRKINFKVGKPFEKVEKTENGVK-VTI 251
                 68********************************************************************965.665 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   1.3   0.00031      0.31       1      35 [.      12      45 ..      12      50 .. 0.92
   2 !   31.4   0.1   1.1e-10   1.1e-07     115     305 .]     126     306 ..     107     306 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00031
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnigns 35
                 +I G+G  G a+a+ + ++gl ++  +Ekg++g +
   KIR60784.1 12 VILGGGSGGYATALRAVQLGL-TVALVEKGKLGGT 45
                 79*******************.79*******9866 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 1.1e-10
  Pyr_redox_3 115 evetsketyeAkkviiAtGefdkPn.klnipGeek.lvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsysl 210
                   ve + + y+ ++v++A G + k    l++ Ge   ++ h  +   + +      +V Gg+  +v+ A    + g +Vt++     + + e++ s   
   KIR60784.1 126 AVEVDGKRYTGRNVVLASGSYAKSLpGLEVDGERIiTSDHALT---L-DRVPSSAIVLGGGVIGVEFASVWKSFGVDVTIIEALPRLVAAEDEES--- 216
                  5888999**************8864146899998322333333...3.4447889****************************998888764444... PP

  Pyr_redox_3 211 kpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkkslfeldedgrpvlteeteetnvpglflaG 305
                       + le++ +++ki++   +  ++++++e+ +kv+ + g++ve+ +  ++a+G  p +  l  +    + d+  vlt+e   t vp+++ +G
   KIR60784.1 217 ----SKALERAFRKRKINFKVGKPFEKVEKTENGVKVTIAGGETVEA-ELLLVAVGRGPRTADLGYEEQGVRMDRGYVLTDERLRTGVPNVYAVG 306
                  ....688999999999**************************99886.677999**********998888899999****************998 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   1.6   1.6e-10   1.6e-07       1     155 [.      10     150 ..      10     159 .. 0.87
   2 ?    4.1   0.1     0.021        21       3      28 ..     177     202 ..     175     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.6e-10
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE..ES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT-SHHHHHHHHEEEEEEESTTS-CCC-EEEEEE-HHHH CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi..thkldtiaelsCnpsiggiakgllvrEidalggliikaadkagiqfrilNrskGpavralraqvdrely 97 
                 d++++GgG  G++ Al a +lG+ v+L+   +  +t+++ +C p+   + ++++    ++   + +  a+  gi +          v+a +  v  +ly
  KIR60784.1  10 DIVILGGGSGGYATALRAVQLGLTVALVekGKLGGTCLHNGCIPTKALLHAAEIADSTRE-SEQFGVKAELVGIDMA--------GVNAYKDGVISRLY 99 
                 799*************************8778899**************99999999999.5667777899999444........45555555555566 PP

                 HHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT-E CS
        GIDA  98 skevteklenepnleiieeeveeliveekkvkgvvtedgetikakavviatGtflkgk 155
                  k ++ +l+ ++ ++++e+    + +        v  dg+ ++ ++vv+a+G++ k+ 
  KIR60784.1 100 -KGLQGMLKGNKAITVVEGHGRLVAP------NAVEVDGKRYTGRNVVLASGSYAKSL 150
                 .5799*******************99......88899****************99875 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.021
                 EEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLi 28 
                 iV+GgG  G+e A   +  G++v++i
  KIR60784.1 177 IVLGGGVIGVEFASVWKSFGVDVTII 202
                 8**********************998 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.6   4.8e-05     0.048       1      34 [.       9      42 ..       9      50 .. 0.91
   2 ?   -2.8   0.0       1.9   1.9e+03     145     169 ..     127     152 ..     120     160 .. 0.76
   3 ?    2.3   0.2     0.053        53       3      34 ..     176     207 ..     174     211 .. 0.91
   4 !   13.2   0.0   2.8e-05     0.027     113     179 ..     218     284 ..     209     291 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.8e-05
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVlllekakk 34
                 +d++++GgG  G  +A++a + g  V+l+ek+k 
   KIR60784.1  9 FDIVILGGGSGGYATALRAVQLGLTVALVEKGKL 42
                 589****************************964 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.9
                  EEE.TTEEEEESEEEE----..SS-GG CS
  HI0933_like 145 vktkseeeleadklvlAtGG..lSiPk 169
                  v++ ++++++ +++vlA+G+  +S+P 
   KIR60784.1 127 VEV-DGKRYTGRNVVLASGSyaKSLPG 152
                  566.7899999******9973356665 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.053
                  EEEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS
  HI0933_like   3 viviGgGaAGlmaAisaakrgkrVlllekakk 34 
                   iv+GgG  G+  A   ++ g +V+++e+ ++
   KIR60784.1 176 AIVLGGGVIGVEFASVWKSFGVDVTIIEALPR 207
                  79**************************8765 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 2.8e-05
                  HHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---.-SS-GGGT--SHHHHH CS
  HI0933_like 113 dallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG.GlSiPklGstgkgykl 179
                  +al+++ +++++++++ +  ++vek+e+g ++v++ ++e++ea+ l++A+G G   + lG +++g+++
   KIR60784.1 218 KALERAFRKRKINFKVGKPFEKVEKTENG-VKVTIAGGETVEAELLLVAVGrGPRTADLGYEEQGVRM 284
                  68999********************9999.999999***************78888999988888876 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   1.9   5.3e-09   5.3e-06       1      39 [.      10      47 ..      10      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 5.3e-09
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGllt 39
                  D+v+ GGg++G+a A+ A + G +v+Lve+   lGG+  
    KIR60784.1 10 DIVILGGGSGGYATALRAVQLGLTVALVEKG-KLGGTCL 47
                  9***************************986.5788754 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.22   2.2e+02       2      30 ..      11      39 ..      10      73 .. 0.92
   2 !   19.7   0.1   6.1e-07   0.00061       4      71 ..     178     244 ..     175     266 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.22
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdi 30
                + ++G G  G   a  +++ gl+V lv+ 
  KIR60784.1 11 IVILGGGSGGYATALRAVQLGLTVALVEK 39
                789***********************986 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 6.1e-07
                 EE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES CS
     3HCDH_N   4 viGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisftt 71 
                 v+G G++G + a+v  s g++V++++  ++ +++  e+ +k le++ +k+k++  +v + +++++ t+
  KIR60784.1 178 VLGGGVIGVEFASVWKSFGVDVTIIEALPRLVAAEDEESSKALERAFRKRKIN-FKVGKPFEKVEKTE 244
                 9**************************************************99.44444444444333 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.8   3.6e-07   0.00036       1      35 [.      10      43 ..      10      76 .. 0.88
   2 ?   -4.0   0.0       5.8   5.8e+03     189     204 ..     133     148 ..     121     157 .. 0.78
   3 ?   -3.5   0.3       4.2   4.2e+03       2      32 ..     176     206 ..     175     209 .. 0.88
   4 ?    1.4   0.0      0.13   1.3e+02     376     402 ..     289     309 ..     281     322 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.6e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefg 35
                   D+++ G+G +G+a Al+a + Gl+va+vek++  g
     KIR60784.1 10 DIVILGGGSGGYATALRAVQLGLTVALVEKGKL-G 43
                   99****************************986.3 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 5.8
                    EEEESEEEE-----GG CS
  FAD_binding_2 189 rirakavvlatgGfgr 204
                    r++ ++vvla+g + +
     KIR60784.1 133 RYTGRNVVLASGSYAK 148
                    7788899999998875 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 4.2
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSS CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeq 32 
                    +iV G+G+ G   A   +  G +v+++e  +
     KIR60784.1 176 AIVLGGGVIGVEFASVWKSFGVDVTIIEALP 206
                    699*****99999999999999999999766 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.13
                    EEBETTSBESTTEEESSBTEEE-STCE CS
  FAD_binding_2 376 vetdengrvldadgqpipGLYAaGeva 402
                    v tde++r+       +p+ YA+G   
     KIR60784.1 289 VLTDERLRT------GVPNVYAVGDIV 309
                    6799999*9......*********887 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   1.5     9e-05     0.089       1      36 [.      13      47 ..      13      65 .. 0.93
   2 !    7.2   0.1    0.0058       5.7       1      31 [.     178     208 ..     178     217 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraa 36
                   I+G+G +G ++A ++ + g+ v l+ek+ +lGG + 
     KIR60784.1 13 ILGGGSGGYATALRAVQLGLTVALVEKG-KLGGTCL 47
                   89*************************9.8999886 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0058
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31 
                    ++G+G+ G  +A+  +  g+dv+++e+ +rl
     KIR60784.1 178 VLGGGVIGVEFASVWKSFGVDVTIIEALPRL 208
                    79************************98886 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.7    0.0089       8.8      30      59 ..      10      39 ..       5      43 .. 0.90
   2 !   13.3   0.1   3.7e-05     0.037      28      65 ..     173     210 ..     166     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0089
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEES CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDv 59
                  ++++GgG  G + +  a++lg +V ++++
   KIR60784.1 10 DIVILGGGSGGYATALRAVQLGLTVALVEK 39
                 589*********************998775 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.7e-05
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHH CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparle 65 
                  p+  +v+GgGv G++ +++ k++g +Vt+++  p+   
   KIR60784.1 173 PSSAIVLGGGVIGVEFASVWKSFGVDVTIIEALPRLVA 210
                  67889*************************98766554 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   3.8   3.5e-06    0.0035       1      41 [.      10      50 ..      10      73 .. 0.86
   2 ?    2.1   0.0      0.12   1.2e+02     169     213 ..     115     153 ..      83     174 .. 0.60
   3 ?    1.6   1.1      0.17   1.7e+02       3      28 ..     177     204 ..     175     208 .. 0.83
   4 ?    2.3   0.1       0.1     1e+02     146     225 ..     214     290 ..     206     311 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.5e-06
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSE CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrns 41
                d+vi GGG  G +tA+ + + g  V+l+ekg  +g g+  +n+
  KIR60784.1 10 DIVILGGGSGGYATALRAVQLGltVALVEKG-KLG-GTCLHNG 50
                9******************************.999.9988877 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.12
                 EEEEEEEETCEEEEE...EECTEEEEEEEEEEE--GGGHHHHHTTCTT CS
         DAO 169 vtgleeedgkvwgve...rttpgendaadavVnaaGawsdllgllkel 213
                 v+g+      +  v    ++ +g + + + vV+a G +++ l   + l
  KIR60784.1 115 VEGH------GRLVApnaVEVDGKRYTGRNVVLASGSYAKSL---PGL 153
                 3333......22222332122255534478********9877...443 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.17
                 EEECTSHHHHHHHHHHHHT.T..EEEEES CS
         DAO   3 viiGGGiiGlstAyeLarr.g..Vtllek 28 
                 ++ GGG+iG+  A    +  g  Vt++e+
  KIR60784.1 177 IVLGGGVIGVEFASVW-KSfGvdVTIIEA 204
                 89********999999.444889999997 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--G..GGHHHHHTTCTTTSEEEEEEEEEE CS
         DAO 146 akltaalaraaealGveilegtevtgleeedgkvwgverttp.gendaadavVnaaG..awsdllgllkeldlpispvrgqvl 225
                 ++  +al ra++++ +++  g + +++e++++ +++v  t + ge+++a+ + +a G  + +  l   +  ++ ++  rg+vl
  KIR60784.1 214 EESSKALERAFRKRKINFKVGKPFEKVEKTEN-GVKV--TIAgGETVEAELLLVAVGrgPRTADL---GYEEQGVRMDRGYVL 290
                 5566899********************87643.3444..33436665557777777611444322...222334455556655 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.66   6.6e+02      11      25 ..     193     207 ..     185     208 .. 0.87
   2 ?   11.7   0.0   0.00012      0.11     215     261 ..     219     267 ..     210     272 .. 0.87
   3 ?   -3.2   0.0       3.7   3.7e+03     411     451 ..     292     329 ..     282     330 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.66
                    HHTTEEEEEEESSSS CS
  Amino_oxidase  11 lsaGfdVtvlEardr 25 
                    +s+G+dVt++Ea +r
     KIR60784.1 193 KSFGVDVTIIEALPR 207
                    689*********888 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00012
                    HHHH..TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S- CS
  Amino_oxidase 215 alae..elrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvp 261
                    al++  ++r+ +++++++  ++++ ++gv+vt+  ge+vea   +v+v 
     KIR60784.1 219 ALERafRKRKINFKVGKPFEKVEKTENGVKVTIAGGETVEAELLLVAVG 267
                    44445556999***********************************996 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.7
                    HHHHCHHCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHHHHH CS
  Amino_oxidase 411 dplakpegdprlffAGehtsreypgtvegAilSGlraAari 451
                    d   ++ g+p+++  G+ +     +  +  ++ G+ +A++i
     KIR60784.1 292 DERLRT-GVPNVYAVGDIVP--GLQLAHRGFQQGIFVAEEI 329
                    556677.9999999999977..7777999999999999988 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.0    0.0028       2.7       1      33 [.      10      40 ..      10      44 .. 0.94
   2 ?    2.3   0.1      0.07        70       3      39 ..     177     211 ..     176     224 .. 0.90
   3 ?    5.7   0.0    0.0066       6.5     109     152 ..     237     277 ..     211     291 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0028
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieas 33
                   D+v+ G+G  g + A r    + gl v l+e +
     KIR60784.1 10 DIVILGGGSGGYATALRA--VQLGLTVALVEKG 40
                   9*****************..99********987 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.07
  Lycopene_cycl   3 vviGaGpAglslAarlteakpglkvvlieaspsllfp 39 
                    +v G+G  g+  A     +  g+ v++iea p l+ +
     KIR60784.1 177 IVLGGGVIGVEFASVW--KSFGVDVTIIEALPRLVAA 211
                    899**********999..9***********9998655 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0066
  Lycopene_cycl 109 vesveeeeageslvvleggrkirarlvvdarglaslkkarrlgl 152
                     e+ve+ e+  + v+++gg++++a l ++a g  ++++  +lg+
     KIR60784.1 237 FEKVEKTEN-GVKVTIAGGETVEAELLLVAVG--RGPRTADLGY 277
                    467777777.899*************999999..6666666665 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1       0.3     3e+02      39      67 ..      11      39 ..       6      62 .. 0.89
   2 ?    9.3   0.0   0.00066      0.66      40      76 ..     177     213 ..     159     229 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.3
                  EEEES-SHHHHHHHHHHHHTT-EEEEESS CS
  2-Hacid_dh_C 39 vGiiGlGrIGqavakrlkafgmkviaydr 67
                  + i+G G+ G a+a r+ ++g+ v  +++
    KIR60784.1 11 IVILGGGSGGYATALRAVQLGLTVALVEK 39
                  689*******************9998765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00066
                   EEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHH CS
  2-Hacid_dh_C  40 GiiGlGrIGqavakrlkafgmkviaydrskkkeeeee 76 
                    ++G G IG ++a + k+fg++v++++  ++  ++e+
    KIR60784.1 177 IVLGGGVIGVEFASVWKSFGVDVTIIEALPRLVAAED 213
                   689**********************999988555222 PP

>> Methyltransf_17  S-adenosyl-L-methionine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00023      0.23      65     115 ..      48      98 ..      10     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00023
                      -GGG---GGGEEES-HHHHHHHHHHH-S-EEEEEE----S-HHHHHHHHHH CS
  Methyltransf_17  65 hpssvPeeedlllGeieetlealakigakaalvhaDlGtgykekdavtatr 115
                      h+ ++P ++ l   ei++++++ +++g+ka lv  D+   ++ kd v ++ 
       KIR60784.1  48 HNGCIPTKALLHAAEIADSTRESEQFGVKAELVGIDMAGVNAYKDGVISRL 98 
                      999**********************************99999998887654 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00014      0.14       1      48 [.      10      54 ..      10      71 .. 0.81
   2 ?   -4.1   1.1       5.1   5.1e+03       3      33 ..     177     204 ..     176     205 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---SS-EE--TH CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeigtvgvGeatips 48
                    +ivi+GGG+ G+ +A    + +   l+v lve+ ++g      + ip+
      KIR60784.1 10 DIVILGGGSGGYATALRAVQLG---LTVALVEKGKLGGTCLHNGCIPT 54
                    69**********8887655555...9********99988777777775 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 5.1
                     EEE--SHHHHHHHHHHHHHTTTSSEEEEEE- CS
  Trp_halogenase   3 vivGGGtaGwlaAaalakalkgklevtlves 33 
                     +++GGG  G   A++ +  +   ++vt++e+
      KIR60784.1 177 IVLGGGVIGVEFASVWKSFG---VDVTIIEA 204
                     689******99999998888...99999985 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   1.0     0.068        67       3      32 ..      10      39 ..       8      42 .. 0.93
   2 ?    5.4   0.3    0.0094       9.4       4      34 ..     176     206 ..     174     219 .. 0.90
   3 ?   -0.9   0.0      0.73   7.3e+02     106     157 ..     215     261 ..     205     285 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.068
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   d++I G+G  G  +al   + G  v lvek
     KIR60784.1 10 DIVILGGGSGGYATALRAVQLGLTVALVEK 39
                   899**************************9 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0094
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                     ++ G+G  G+  a++ ++ Gv+v+++e   
     KIR60784.1 176 AIVLGGGVIGVEFASVWKSFGVDVTIIEALP 206
                    5799************************875 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.73
                    HHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEE CS
  FAD_binding_3 106 eleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakY 157
                    e  ++L+ + ++r ++++ ++ +e +e++e+gv+ ++ + e     tv+a+ 
     KIR60784.1 215 ESSKALERAFRKRKINFKVGKPFEKVEKTENGVKVTIAGGE-----TVEAEL 261
                    55678888888999999999999*********999998886.....555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 3106.01
//
Query:       KIR60785.1  [L=109]
Description: hypothetical protein TK50_23295 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.13   11.5   0.0       0.15   11.2   0.0    1.1  1  Glyco_transf_11  Glycosyl transferase family 11


Domain annotation for each model (and alignments):
>> Glyco_transf_11  Glycosyl transferase family 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.4e-06      0.15     201     245 ..      44      89 ..      34      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.4e-06
  Glyco_transf_11 201 rarvssvvfvvfSddveWckkniktssgdvyfagd.gspaedvall 245
                      r  v+   ++ + dd eW ++ i+  +g   fa + + p+ dv l+
       KIR60785.1  44 RTTVTETTVILIADDGEWTRRRIDGPEGARRFAHKlAIPVYDVRLM 89 
                      566778899**************************99999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 909.76
//
Query:       KIR60786.1  [L=523]
Description: aminopeptidase A [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     2e-110  368.9   0.3     2e-110  368.9   0.3    1.4  2  Peptidase_M17    Cytosol aminopeptidase family, catalytic dom
    3.9e-22   78.4   0.6    3.9e-22   78.4   0.6    2.8  4  Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal do
  ------ inclusion threshold ------
       0.24   11.5   3.1       0.19   11.9   0.6    2.1  3  LPD7             Large polyvalent protein-associated domain 7


Domain annotation for each model (and alignments):
>> Peptidase_M17  Cytosol aminopeptidase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.2         1   6.1e+03     184     198 ..      71      85 ..      61     103 .. 0.64
   2 !  368.9   0.3  3.4e-114    2e-110       2     311 .]     203     513 ..     202     513 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1
                    CT--SEEEEEE---T CS
  Peptidase_M17 184 kekpdlivdvATLTg 198
                    +  p  ++ +ATL  
     KIR60786.1  71 TGAPGEVIKLATLGT 85 
                    447888888888843 PP

  == domain 2  score: 368.9 bits;  conditional E-value: 3.4e-114
                    HHHHHHHS-TTTS-HHHHHHHHHHHHTCCTEEEEEEEECHHHHHTT-HHHHHHHTTSSSS--EEEEEEEE-SS.TTSEEEEEEEEEEEEEE-TTSS CS
  Peptidase_M17   2 lardlvntpaneltpeklaeeaeelakeagkvevevldeeeleekgmgallaVgkgSeeepprlveleykgak.ekekklalVGKGitfDtGGlsl 96 
                    l+rd+vnt +n  +p ++a++++e+a++ag + vevlde++l++ g+g++laVg+gS e pprlv+++y++++  + k++alVGKGitfDtGG+s+
     KIR60786.1 203 LTRDWVNTAPNLQRPPAFADAVAEAARAAG-LAVEVLDEAALAAGGYGGILAVGQGS-EAPPRLVKITYTPEGgGSGKRVALVGKGITFDTGGISI 296
                    79*******************998888887.9*************************.66************9999******************** PP

                    --HHHHTTGGGGGHHHHHHHHHHHHHHHHT-SSEEEEEEEEEEE--STTSTTTTEEEE-TTS-EEEES-TTGCHHHHHHHHHHHHHGCT--SEEEE CS
  Peptidase_M17  97 KpsasmeemkaDmgGAAavlgalkavaelklpvnvvavlplaeNmisgkavkpgdvitamnGktvevlnTDaEGRLvLADalayaeekekpdlivd 192
                    Kp+++m emk+DmgGAAav +++ a+a+lk++v+v+++lp+aeNm+sg++++pgdvit++nGk+vevlnTDaEGR++L+Da+a a+ ++++d++++
     KIR60786.1 297 KPAQGMWEMKSDMGGAAAVGATMLAIAALKPSVTVTGYLPMAENMPSGTSYRPGDVITMYNGKKVEVLNTDAEGRMILGDAIARAC-EDGADYLFE 391
                    *************************************************************************************7.67******* PP

                    EE---THHHHHHTTTSEEEEES-HHHHHHHHHHHHHHS-EEEE----HHHGGGG--SSSSEESS-SS..SSTHHHHHHHHHHTTSSE.CGEEEEE- CS
  Peptidase_M17 193 vATLTgavvvalGkkaaglfsnddelaeelekageeagervwrlpleeeykkqlkskvaDlknvgkk..rragaitAalFLkefvke.tpWaHlDi 285
                    ++TLTg +v++lGk+++g+++ + el e++++ag+++ge +w++pl +e++k ++s+vaD+++v+++  r++++++ ++FL+efv++ ++WaH+Di
     KIR60786.1 392 TSTLTGGQVISLGKRISGVMG-TPELCERVRAAGDAVGEPAWPMPLPDEVRKGMDSDVADISQVNAGmdRAGHMLQGGVFLREFVADdVAWAHIDI 486
                    *********************.678*************************************99988745559999*********77799****** PP

                    TTTTES.BTTB.S...EE--TTHHHHH CS
  Peptidase_M17 286 agtalkekealkke.kgatGvgvrtLv 311
                    ag+++++ ea+ +  kg+tGv+vrtLv
     KIR60786.1 487 AGPSYHSGEATGYWtKGGTGVPVRTLV 513
                    ****955554444479*********96 PP

>> Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.6   6.6e-26   3.9e-22      10     125 ..      46     163 ..      40     164 .. 0.92
   2 ?   -2.3   0.0      0.65   3.9e+03      85     109 ..     170     198 ..     167     205 .. 0.55
   3 ?   -2.3   0.1      0.63   3.8e+03     102     113 ..     213     229 ..     178     237 .. 0.56
   4 ?   -1.5   0.7      0.37   2.2e+03      45      61 ..     269     286 ..     225     288 .. 0.66

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 6.6e-26
  Peptidase_M17_N  10 lspaaekldealagllsellkegdftGkagevlvlralsgekakrvllVGLGkeee...ltaealrkaagaaaralkgakvttiavalp.legk 99 
                      l+++ae++ +a++g+l+e l+ +++tG++gev +l +l+ + a+ v++VGLG e +     +e+lr+aag+a+ral+g  + ++a++lp  +  
       KIR60786.1  46 LASGAESIAAAFDGKLTETLALLGATGAPGEVIKLATLGTVTAPVVAAVGLGPEPTgaaPAPETLRRAAGSAVRALAG--ARRVALSLPlPDDA 137
                      5677899************************************************999999*****************..88888888844566 PP

  Peptidase_M17_N 100 nsdekaeaaaegallglYrfdryksk 125
                      +++++++a+aegallg Yrf  yk++
       KIR60786.1 138 DAADALRAVAEGALLGGYRFAGYKTR 163
                      666*********************97 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.65
  Peptidase_M17_N  85 akvttiavalplegknsd....ekaeaaa 109
                       +v+++++a+p +g++ +    e a+a+a
       KIR60786.1 170 DPVAEVLIAVPEAGDATAraeiERAHAVA 198
                      57888888888222222234555555554 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.63
  Peptidase_M17_N 102 d.....ekaeaaaegal 113
                      +     ++a a+ae+a+
       KIR60786.1 213 NlqrppAFADAVAEAAR 229
                      24444566777777665 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.37
  Peptidase_M17_N  45 rals.gekakrvllVGLG 61 
                      ++++ g++ krv+lVG G
       KIR60786.1 269 YTPEgGGSGKRVALVGKG 286
                      333312226778888755 PP

>> LPD7  Large polyvalent protein-associated domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   3.2e-05      0.19      32      86 ..     189     243 ..     158     246 .. 0.82
   2 ?   -3.4   0.0       1.9   1.1e+04      41      58 ..     317     333 ..     313     334 .. 0.73
   3 ?   -3.0   0.0       1.4   8.2e+03      16      35 ..     348     369 ..     343     384 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.2e-05
        LPD7  32 tsddddeavaaalelAqak.w..gsltvsGseeFkreaweaaaerglevt.yeptdpdl 86 
                 ++ +++ ava a++l   + w  ++ +++ +++F ++++eaa ++gl v+ ++  +++l
  KIR60786.1 189 AEIERAHAVAGAVRLT--RdWvnTAPNLQRPPAFADAVAEAARAAGLAVEvLD--EAAL 243
                 5566778999999999..557767*************************9665..5555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.9
        LPD7  41 aaalelAqakwgsltvsG 58 
                 a++l++A+ k  s+tv+G
  KIR60786.1 317 ATMLAIAALK-PSVTVTG 333
                 4677777666.7888888 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.4
        LPD7  16 rdgkpaftDrgdriev..tsdd 35 
                 r g +    +g+++ev  t+++
  KIR60786.1 348 RPGDVITMYNGKKVEVlnTDAE 369
                 5555666678999999754444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3540.30
//
Query:       KIR60787.1  [L=376]
Description: glycine cleavage system protein T [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-85  285.5   0.1    4.2e-85  285.2   0.1    1.1  1  GCV_T     Aminomethyltransferase folate-binding domain
    6.9e-18   64.3   0.1    1.6e-17   63.2   0.1    1.6  1  GCV_T_C   Glycine cleavage T-protein C-terminal barrel domain
      7e-05   23.0   0.1    0.00032   20.9   0.0    2.1  2  SoxG      Sarcosine oxidase, gamma subunit family
  ------ inclusion threshold ------
      0.072   13.4   0.0       0.12   12.8   0.0    1.3  1  POPLD     POPLD (NUC188) domain


Domain annotation for each model (and alignments):
>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.2   0.1   9.4e-89   4.2e-85       1     257 []      18     269 ..      18     269 .. 0.98

  Alignments for each domain:
  == domain 1  score: 285.2 bits;  conditional E-value: 9.4e-89
       GCV_T   1 lydrhkalgakfvefagwemPvqYasesikaehlavreaaglfDvShmgkievsGpdaaalLqrlltndisklkpgkatytlllne.dGgvidDlivar 98 
                 l++rh algakf +f+gwemP++Y+ +++ +eh avr+++g+fDvSh+gk +v+Gp+aa++++ +l+nd+ ++ pg+a+ytl++++ +Ggv+dD+i + 
  KIR60787.1  18 LHERHTALGAKFAPFGGWEMPLEYSGGGVLREHTAVRTGVGVFDVSHLGKARVTGPGAADFVNACLSNDLGRIGPGQAQYTLCCDDaTGGVVDDIIAYL 116
                 799**********************************************************************************999*********** PP

       GCV_T  99 ldedefllvvnaankekdlawlekaaekkdldvevedvteelallalqGPkarevlskllgadlselkffsfaevelaggkkvlvsRtgytGedGfeiy 197
                 +++d+++lv naan++++++ l++ a+   ++v+v d+++  a+la+qGP+++e+l++l   + +  +++sf++ +la + +++v+RtgytGe+G+e++
  KIR60787.1 117 HADDHVFLVPNAANTAEVVRRLRA-AA--PEHVTVVDEHAGHAVLAVQGPRSAELLAALG-LPTDH-DYMSFRTATLA-DAELTVCRTGYTGELGYELV 209
                 ************************.77..8*****************************9.55555.9*********9.******************** PP

       GCV_T 198 ipaeeaeelweaLleagkeegvkpaGlgArdtlRlEaglrlyghdldeettPleaglgwa 257
                 +pa +a ++w+aL +ag++++++ +Gl+ArdtlR E+g++l g+dl++e+tP++a+ gwa
  KIR60787.1 210 VPAGHAVAVWDALTAAGAAYELRACGLAARDTLRTEMGYPLHGQDLSPEITPVQARSGWA 269
                 *********************************************************996 PP

>> GCV_T_C  Glycine cleavage T-protein C-terminal barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.1   3.6e-21   1.6e-17       1      79 [.     293     371 ..     293     371 .. 0.94

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 3.6e-21
     GCV_T_C   1 RrlvglelddgapllrggepilrdgevvGhvTSgaysptlgksialAyvk..aelaklgtevevevrgkrvpaevvkkpfy 79 
                 R l gl+  d+ +++r g++++ ++++vG+vTSg++spt ++ ialA+++  a+la+ g++v+v++rg+r p +v+++pf+
  KIR60787.1 293 RTLRGLVAVDR-AIPRPGMKLYVGDTCVGTVTSGTFSPTRKQGIALALLDtsAGLAD-GDRVDVDIRGRRAPLTVTRPPFV 371
                 78999999877.678***********************************8788888.**********************6 PP

>> SoxG  Sarcosine oxidase, gamma subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.44     2e+03      65      95 ..      58      87 ..      45     100 .. 0.77
   2 !   20.9   0.0   7.2e-08   0.00032      37     145 ..     117     226 ..      94     228 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.44
        SoxG 65 svvdlShgrvlisisGakaeavlakltaiDl 95
                 v d+Sh   + +++G+ a   ++   + Dl
  KIR60787.1 58 GVFDVSHLG-KARVTGPGAADFVNACLSNDL 87
                466788865.458999999999999999998 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 7.2e-08
        SoxG  37 laPdeflvid..qegkaalaalaealaelasvvdlShgrvlisisGakaeavlak.ltaiDlsadaFpvGaaaatilgkvevvil...rtgsdafevlv 129
                  a d+ +++    ++ +++++l+ a  e  +vvd   g+  + ++G+++ ++la  + + D    +F+     ++ l+++e ++     tg+  +e++v
  KIR60787.1 117 HADDHVFLVPnaANTAEVVRRLRAAAPEHVTVVDEHAGHAVLAVQGPRSAELLAAlGLPTDHDYMSFR-----TATLADAELTVCrtgYTGELGYELVV 210
                 455555555544455556777777766677******************9999986368*********8.....455666666666122567889***** PP

        SoxG 130 frsFaeslwkaLldas 145
                  +  a  +w+aL+ a 
  KIR60787.1 211 PAGHAVAVWDALTAAG 226
                 ************9876 PP

>> POPLD  POPLD (NUC188) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.6e-05      0.12       1      46 [.     205     254 ..     205     268 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.6e-05
       POPLD   1 gwdlilPwgwglpfwlsLvrvg....vrvgGlrerrqlalesgkpyfPdd 46 
                 g+ l++P+g + ++w +L+  g     r+ Gl  r +l +e g p   +d
  KIR60787.1 205 GYELVVPAGHAVAVWDALTAAGaayeLRACGLAARDTLRTEMGYPLHGQD 254
                 689**************************************998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3093.17
//
Query:       KIR60788.1  [L=433]
Description: hypothetical protein TK50_23310 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00013   22.0   0.0    0.00021   21.4   0.0    1.3  1  DUF2314   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2314  Uncharacterized protein conserved in bacteria (DUF2314)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.2e-08   0.00021       3     116 ..     315     421 ..     313     429 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.2e-08
     DUF2314   3 emkeAiekAretfkyFlrelswekrRiipgldlaavKiaftdekkgeeepkvEhmWiedvefd.gekikGvlanePeeltnvkegdkveiklneisDWl 100
                 +m++Ai+ Are ++   + +   +   +p+ +  +vK+ ++ ++        E++W    + d  e i G  a+++++  +v+ g  v ++  ++ DW 
  KIR60788.1 315 AMSRAIATAREGLDDVRARFLAGQ---LPAESQLVVKYGLPGDEG------PEYVWAGVTSWDaPERIVGASASDASTDPTVRIGAPVVVEAADVVDWA 404
                 8******************99999...9*************9888......5**********97799*******************************8 PP

     DUF2314 101 yv.edgktyGgyTikal 116
                 ++  +g + Gg+T  +l
  KIR60788.1 405 VLgATGVIEGGWTQAVL 421
                 773678999***98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3133.25
//
Query:       KIR60789.1  [L=664]
Description: cobalamin biosynthesis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-67  226.3  14.3    5.6e-67  226.3  14.3    1.7  2  DBI_PRT   Phosphoribosyltransferase
    1.6e-47  161.2   0.0    2.9e-47  160.4   0.0    1.4  1  CobU      Cobinamide kinase / cobinamide phosphate guanyltran


Domain annotation for each model (and alignments):
>> DBI_PRT  Phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   1.1      0.26   2.3e+03     299     316 ..     187     204 ..     151     218 .. 0.71
   2 !  226.3  14.3   6.2e-71   5.6e-67       2     319 ..     264     574 ..     263     579 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.26
                 -TTHHHHHHHHHHHHHHH CS
     DBI_PRT 299 GEGtGAalalplleaAaa 316
                 G G GA++a p   aAa+
  KIR60789.1 187 GTGAGAVTAAPTTVAAAQ 204
                 556666666666555554 PP

  == domain 2  score: 226.3 bits;  conditional E-value: 6.2e-71
                 ...XHHHHHHHHHHHCTBSSSTTTTHHHHHHHHHHHCHHCGTTS.---EEEEEEEEE-BGGGGGT--SS-TTHHHHHHHHHHCT-SHHHHHHHHCTEEE CS
     DBI_PRT   2 epldeeameaararldsltkPlgsLGrLeelavqlagiqgtlkp.elekkavlvfagDhGvaaegvsaypqevTaqmvenflaggaavnvlarqagael 99 
                 + +de a  +a +rl++l  P  +LG Le+++   a++qgt +p ++++++vl++ gDh  a      +p+  +a  +++  ag++ ++ la++ ga+l
  KIR60789.1 264 PMPDEYAGPQALERLATLDVPGAGLGVLERVVGFAAATQGTPTPaSWDSVRVLLLHGDH--AGGAAAGSPPGESARRAAQARAGQGVLARLAAESGASL 360
                 57999******************************************************..4444556999999************************* PP

                 EEEEEE-S--TEE--SSSSB--TTTS-SS-HHHHHHHHHHHHHHHHHHHCTTECEEEEEEE-TTCHHHHHHHHHHHHT--HHHH---....TTT--HHH CS
     DBI_PRT 100 rvvDvgvadlevdrkvrrgtaniakepAmtreeaeaaleaGieladeladagadllalGemGigNttaaaallaallglepeevvGr....Gtglddeg 194
                 +vv+               ++ i+  pA+++e++e+al++G++la+e+a+ag++ll+l+ +G g+ +aaaa+laa+ g+ep +v Gr    G ++dd++
  KIR60789.1 361 QVVETP------------ASEAIEDLPALDHEQVEQALRYGWRLAEEAAEAGVRLLVLAACGAGTDAAAAAVLAATAGAEPPAVLGRvvtaGGEIDDAA 447
                 ****99............799*****************************************************************99999******** PP

                 HHHHHHHHHHHHHCH..-TT.HHHHHHHHS-HHHHHHHHHHHHHHHTT--EEE-SHHHHHHHHHHHHHSGGGGGGEEE-B--SSTCHHHHHHHHT---S CS
     DBI_PRT 195 larKiavieqalarh..aekdplevLakvGGleiaalaGailgAaarripvvlDGfistaAalvAvrlapevkdyliashrsaepghkllleaLglepl 291
                 ++r++a++++al+r+  +++d+ +vLa++GG +ia+ +G++lgA arr+pv+lDG +  aA +v ++la +++++++++++  +p+ +l+++ Lglepl
  KIR60789.1 448 WMRRCAAVRDALHRTrrSPRDAKDVLAELGGGDIAVATGVLLGATARRLPVLLDGPVGLAAGMVSRDLAGQARHWCLLADHGGHPAVRLAADVLGLEPL 546
                 ***************63356******************************************************************************* PP

                 B-S---S-TTHHHHHHHHHHHHHHHHCC CS
     DBI_PRT 292 ldlglrlGEGtGAalalplleaAaalln 319
                 ldl+l+lGEG  A++alpll++ ++l++
  KIR60789.1 547 LDLRLDLGEGANALTALPLLRSVLSLAA 574
                 *********************9888765 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.4   0.0   3.2e-51   2.9e-47       1     167 [.       9     177 ..       9     179 .. 0.93

  Alignments for each domain:
  == domain 1  score: 160.4 bits;  conditional E-value: 3.2e-51
        CobU   1 ilvtGgarSGKSefAeklaeeskekvvYiATaeal...DeemaeRiarHrerRpaeWetvee...pldlaealkeeekkevvLvDcltlwltnllleee 93 
                 +lv+Gg+rSGKSefAe+l+++ + +v Y+AT+ a    D+e+a+R+++Hr+rRp  W+t e+   p++la+++++++ +e++LvD+l+ w+t ll+ ++
  KIR60789.1   9 VLVLGGIRSGKSEFAESLVAD-APTVRYVATSAAGdptDAEWAARLKAHRDRRPGGWTTEETaddPRRLADLVASARPNETLLVDDLGGWVTVLLDPAH 106
                 79****************996.699*******99888899******************999844456899999888889*****************977 PP

        CobU  94 aekveekleeeveellealkelkatvvlVsnEvglgvvpenalgrlfrdllGrlnqrlaaeadevvlvvaGlpl 167
                 +    ++ +++v+el++a+++++a++v+Vs Evgl++vp+++lgr f+d+lG++n+++a ++d vvlvvaG+++
  KIR60789.1 107 Q---PADDTATVAELADAVRACPARLVVVSPEVGLSLVPTTPLGRAFTDALGAANRAVADACDAVVLVVAGQAC 177
                 4...5888999************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 4308.94
//
Query:       KIR60790.1  [L=266]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-07   30.2  10.4    0.00016   21.1   1.3    3.1  3  Peptidase_M50  Peptidase family M50
  ------ inclusion threshold ------
      0.028   14.2   0.6      0.028   14.2   0.6    1.5  1  Trp_oprn_chp   Tryptophan-associated transmembrane protein (T


Domain annotation for each model (and alignments):
>> Peptidase_M50  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1   0.00026       2.4       7      25 ..      61      79 ..      54      82 .. 0.86
   2 !    7.0   0.3   0.00035       3.1      87     108 ..     135     156 ..     130     169 .. 0.89
   3 !   21.1   1.3   1.8e-08   0.00016     188     223 ..     169     204 ..     163     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00026
                   XXXXXXXXXXXXXXXXXXX CS
                   xxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50  7 gilvvvHElGHflvAklcg 25
                   ++++ +HE++H++vA ++g
     KIR60790.1 61 LVSLCLHEYAHAVVAYRAG 79
                   68999**********9987 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00035
                    XXXXXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50  87 rllivlAGplanfilailvfvv 108
                      l+ lAGp++n+++++++++v
     KIR60790.1 135 HTLVSLAGPATNVLFTLVLVAV 156
                    57899*************9987 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 1.8e-08
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 188 lssflqllalisvnLgilNLlPipvLDGghllfall 223
                    +++ l+lla++ +   +lNLlP+p LDGg++++  l
     KIR60790.1 169 FWAGLALLAFLQLTASVLNLLPVPGLDGGNMIQPWL 204
                    5677899***********************998665 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.6   3.1e-06     0.028      30     136 ..      10     124 ..       2     136 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.1e-06
  Trp_oprn_chp  30 gprtvalsGadwapaltalAlvllAaavAvlavrglgrrvvgvllalagagaavaalslltdpadaaraaaaaatgvasaaaave...lta...... 117
                   +p  + +  a   p ++ lAlv+l aa  v+a +++g + v v l +++ +++   l+  +++  a ra +++   ++++  + +   +t       
    KIR60790.1  10 EPLVLGVPRAAFRPSPVFLALVALFAASGVMAWNRFGNVRVDVFLFVVSGWLVSLCLHEYAHAVVAYRAGDRD--IAHRGYLTLNpfkYTHpllsiv 104
                   566666667788999999****************************************999999999999977..4445555555555444556677 PP

  Trp_oprn_chp 118 .wpvlalaggvllllagvll 136
                    ++v++l+gg+ l  ++v++
    KIR60790.1 105 lPVVVVLLGGIGLPGGAVWV 124
                   67788888888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1948.21
//
Query:       KIR60791.1  [L=332]
Description: aldo/keto reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-75  252.5   0.0    5.3e-75  252.3   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.3   0.0     3e-79   5.3e-75       1     293 [.      15     314 ..      15     315 .. 0.97

  Alignments for each domain:
  == domain 1  score: 252.3 bits;  conditional E-value: 3e-79
                   .EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE..--SSSTTSSSS-HHHHHHHHHHHHH CS
  Aldo_ket_red   1 elglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv..dlrdaeiksglskeniresleeslk 95 
                   e+ +G w  ++  +++++ a + +r+ale Gi++fDtA+vY  +++ee+lG+alk   ++re + i tKv  + +++ +++gls+++i+es++ sl+
    KIR60791.1  15 EISYGNWITHGS-QVEEDAATACVRAALETGITTFDTADVYAGTKAEEVLGRALKG--ERREGLEIFTKVfwPTGPGRNDRGLSRKHIMESINGSLR 108
                   688999999986.*******************************************..*************************************** PP

                   HHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH...HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEB CS
  Aldo_ket_red  96 rLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka...kkkkkvkivavqveynllreleeegllelckkkgvpliay 189
                   rL+tdyvDl++ Hr d+s+p +ee+++a++++v +Gk+ +iGvS+++++ +++     ++  +++v++q +y++l ++ e++++++ +++g++ i++
    KIR60791.1 109 RLQTDYVDLYQAHRYDHSTP-LEETMEAFADVVHSGKAHYIGVSEWTADEIRAGhrlARELRIPLVSNQPQYSMLWRVIEAEVVPTSEELGLGQIVW 204
                   ********************.*******************************879989999************************************ PP

                   STTGGGTTGTTTSS---SSSCCC-------......TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG-- CS
  Aldo_ket_red 190 splggGlltgkyqseedkedkeprkdlkrd......ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelk 280
                   sp+++G l+gky + ++++ ++++ d k+       + t++ l++++el+ la++ g s+ qla++++l++p+v+++i+gas++eq++dn++a  +k
    KIR60791.1 205 SPIAQGVLSGKYLPGQPPPAGSRATDEKSGanfiarFLTDEVLTRVQELKPLAEQAGLSMPQLAIAWVLQNPNVSSAIVGASRPEQVHDNVKAAGVK 301
                   ******************99999999877799***************************************************************** PP

                   --HHHHHHHHHHH CS
  Aldo_ket_red 281 lseeevaeldell 293
                   l+++ ++++d+++
    KIR60791.1 302 LDADLLKAIDAIV 314
                   **********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2173.76
//
Query:       KIR60792.1  [L=283]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-10   41.7   0.2    1.2e-10   41.5   0.2    1.1  1  ABC2_membrane_6  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane_6  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.2   6.8e-15   1.2e-10      22     229 .]      70     282 ..      46     282 .. 0.84

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 6.8e-15
  ABC2_membrane_6  22 gGwnleevllllglflilqglaavffapalsrigesvrdGsldflLlkPinlllqillkrlnlrrvgrl..lvgiilliyavkkldikltaaki 113
                      +G+   + ++ +      qg+ av++  +  +++e++r+G     Ll+P+ +   +l+ +l+  +   +  l+  +l++     + +++  +++
       KIR60792.1  70 AGYDRAQFATFVWA---GQGMLAVILLWGRPELAERIRTGDVASDLLRPVHPVTSYLATDLGRAGWACVsrLLPPVLVGPLFFDVYLPARWSTV 160
                      56666666666533...3777777777777899****************************9877666666666667777777777788888** PP

  ABC2_membrane_6 114 llliislilglliltslffilgslsfwfvkse..eii.eileglleaakyPltiyplilrklltfiiPvaflsyvPaeivlgklsi...vfalv 201
                       l+++s   ++++ ++  f +++++ w +++   +i   + +g+l  + +Pl ++p +l   l ++ P+ +l  +P  +++++      +  ++
       KIR60792.1 161 PLFVVSATVAVVLCFGCRFLVNATAYWLQDVRgpQILwTLGSGVLAGLYFPLPFLPDALFLALQLATPFPSLLQTPLDVLVERDPTgvqAGLVG 254
                      ****************************9996323445999*****************************************988878778899 PP

  ABC2_membrane_6 202 lqlilalvllvlskliwkkglrkYtsaG 229
                      lq+ +a+++l+l +l+ +++ r+++ +G
       KIR60792.1 255 LQVGWAVAILALCRLVQRRAERRLVVQG 282
                      9***************999999987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1978.74
//
Query:       KIR60793.1  [L=268]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-42  144.2   0.9    5.8e-42  144.0   0.9    1.0  1  ABC2_membrane_6  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane_6  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   0.9   3.2e-46   5.8e-42       4     229 .]      38     267 ..      35     267 .. 0.97

  Alignments for each domain:
  == domain 1  score: 144.0 bits;  conditional E-value: 3.2e-46
  ABC2_membrane_6   4 lalsllllslifskvgslgGwnleevllllglflilqglaavffapalsrigesvrdGsldflLlkPinlllqillkrlnlrrvgrllvgiill 97 
                      ++ + +   +if  + +lgG++l+e l+++gl+      a++++ ++++r++ +vr+G +d +Ll+P+ +l q+ll +l lr++ r ++g+ +l
       KIR60793.1  38 TVFDVVTVLVIFGVTRELGGFTLRETLVMVGLSACAFATADLLV-GNVERLPAYVRTGLFDAVLLRPLGALPQLLLMDLPLRKASRAVFGLAVL 130
                      667788999************************99999999988.************************************************* PP

  ABC2_membrane_6  98 iyavkkldikltaakillliislilglliltslffilgslsfwfvkseeii.eileglleaakyPltiyplilrklltfiiPvaflsyvPaeiv 190
                        a+++ +i++t+  + l++ + + g+++++s+f++++++sf+  +s e +  +++g+ ++ +yP+ti++  +r  + + + +af+sy Pa ++
       KIR60793.1 131 LVALARAGIEWTPGRVALAVAAPLAGVVFFGSVFVATATVSFYWTESGELAnSVTYGGRDFTSYPVTIFDGWFRAAFAYGMGFAFVSYQPALAL 224
                      ******************************************9999999998****************************************** PP

  ABC2_membrane_6 191 lgklsi....vfalvlqlilalvllvlskliwkkglrkYtsaG 229
                      lg++++    +++ +  + +alv  +l+ ++w++g+r Y+s+G
       KIR60793.1 225 LGRADPlglpAWVGWASPTVALVAAALAAAAWRVGVRHYRSTG 267
                      **********9******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2042.78
//
Query:       KIR60794.1  [L=198]
Description: hypothetical protein TK50_23360 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-43  147.4   1.5    5.9e-43  146.9   1.5    1.2  1  DUF3043   Protein of unknown function (DUF3043)


Domain annotation for each model (and alignments):
>> DUF3043  Protein of unknown function (DUF3043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   1.5   3.3e-47   5.9e-43       2     171 .]      37     196 ..      36     196 .. 0.92

  Alignments for each domain:
  == domain 1  score: 146.9 bits;  conditional E-value: 3.3e-47
     DUF3043   2 KGrpTPkRkeaeaarrrplvapktrkearkrareaarerrerareamraGderylpardrgpvRryvRDlVDsrrnlgelflplalvvlvlllvslvkv 100
                 KGr TPkR  a  +r  ++++p +++ear+r+r+ ++e+ ++          r+  +rdrgp+R ++R++VDsrr++g++f+  al+vl+   +++++ 
  KIR60794.1  37 KGRETPKRPVAG-RRPAGPTKPLSKEEARERRRQLRAESAAE--------FRREGGPRDRGPERLLARNVVDSRRTVGTWFFGGALIVLLG--SNQAMP 124
                 9**********5.55566669999999988888888888888........679999***********************************..556788 PP

     DUF3043 101 pevqavvsllllvllllvvidgillgrkvkkkvrekFp.etesekglglYavsRalqiRrlRlPkPqvkrge 171
                 p v+ + ++l+ +l l vvid+il++rk+kk vre+Fp ++++  +l+lYa++R++++Rr+R+P+P+v++g+
  KIR60794.1 125 PIVRLLSNILWGALALGVVIDSILISRKIKKLVRERFPkSDQRLGSLYLYAIMRSITFRRMRAPEPRVNIGD 196
                 899999999*****************************9999999************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1467.92
//
Query:       KIR60795.1  [L=451]
Description: UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-54  185.2   0.0    1.9e-54  185.0   0.0    1.0  1  EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvin


Domain annotation for each model (and alignments):
>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.0   0.0   1.1e-58   1.9e-54       2     417 .]       9     441 ..       8     441 .. 0.88

  Alignments for each domain:
  == domain 1  score: 185.0 bits;  conditional E-value: 1.1e-58
                    ECSS--EEEEE--B-HHHHHHHHHHHGGGBSSEEEES---SHHHHHHHHHHHHTT.EEEEEECTSEEEEEGTT..--EE-HHHHTT-GGG...GGG CS
  EPSP_synthase   2 ekgkrlegevkvpGsksisnralllAaLaegestitnlLdseDvrsmlealreLgaeiikldeekevviveglggsfeapeelvldlgns...gta 94 
                    ++g++leg+++v G k +  +a+++A L+++ s++ ++++++Dv+    +l   g++++   e++e v ++ + +s +++ ++++ +g s   ++ 
     KIR60795.1   9 HGGTPLEGRIRVRGAKNLVSKAMVAALLGDSPSRLFDVPRIRDVEVVRGLLGLHGVKVTDGAEDGELVFDPANVESASTD-QINVHAGSSripILF 103
                    6789**********888888888888888888*****************999999999999999999*****99999999.799999999555667 PP

                    HHHHHHHHSEESSEEEEE-SBTTCGS--HHHHHHHHHTT-EEEEETTEEEEEESEETSS-BEEEEETSSTTHHHHHHHHHHHTTSBSEEEEES-TT CS
  EPSP_synthase  95 lrlLtallalasgevvLtGdesirkRPidrlldaLrqlGaeieveegenkaplkvkglklkgveikaevsSqqvtsllllaallaegtteleelas 190
                     ++L+ +l++a  ++   G++ i+ RPid +l+aLr+ Ga+++   +   +++      l g++++++ +S+++t+ +ll a++aeg tel ++a 
     KIR60795.1 104 CGPLLHRLGHA--FIPDLGGCHIGPRPIDFHLQALREFGATVDKTPEGLHLSAP---NGLHGTKFALPYPSVGATEQVLLTAVMAEGVTELRNAAV 194
                    78888888877..67777*************************77775555554...99************************************* PP

                    HHHHHHHHHHHHHTT-EEEETTSSEEEEEE--SSB--EEEE--B-HHHHHHHHHHHHHTT-EEEEES--GGGGHHH..HHHHHHHHTTEEEEEEST CS
  EPSP_synthase 191 epsiddtlkmlkkfgikietsgteesitvkGkeklpgteyvvegDassAayflvaAaitggevtvenvginslqGdiealdeilekmgaeitqeed 286
                    ep+i d++ +l+k+g+ i+  +t++ i+++G++kl+g +++ ++D+++Aa +++aA+ t+g v v +++   +    ++l+ i + +g e + ++ 
     KIR60795.1 195 EPEIIDLICILQKMGAIIKV-HTDRVIEIQGVPKLHGYTHRPIPDRIEAASWAAAALATRGHVEVLGAQQADMM---TFLN-IFRSVGGEYEVTDA 285
                    ********************.88888*****************************************9988888...5677.99999966664444 PP

                    SEEEEEET...........TS--BEEEEEBGSTTSBHGGGHHHHHHHHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEETTEEE......... CS
  EPSP_synthase 287 asivvgps...........glklkdvdietlpdeaptlavlaafaegttviegiaelrvketdrlaamateLrklGaeveeeedgli......... 362
                         g +           g +l +v +et ++++++++ +  +    t ++g + + +++ +++   ++ L+ +Ga++++ +d l          
     KIR60795.1 286 RPPKLGDPgqeggirfwhpGGELNAVALETGVHPGFMTDWQQPLVVALTQARGLSIVHETVYEQRLGYTEALNTMGANIQVYRDCLGgtpcrfgrr 381
                    44444444444555555559***************************************************************9999888888888 PP

                    ......EEEEEE.....EB-EEEE-TTSTTTTHHHHHHHHHSBSEEEEETTHHHHHHSSSHHHHH CS
  EPSP_synthase 363 ......iipaek....qlkgaevesydDhRiamalalaglvaegeveiddiectdksfpefeekL 417
                          +    +    +l+ a +    D+R++ +  +a+l+aeg+ ++  ++ +++++++fe kL
     KIR60795.1 382 nfkhsaV----IagpsKLHAADLVIP-DLRAGFSHLIAALAAEGTSRVYGVDLINRGYEDFEAKL 441
                    8744442....333336777777766.**********************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2990.85
//
Query:       KIR60796.1  [L=399]
Description: quinolinate synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.9e-106  355.0   0.0   4.1e-106  354.5   0.0    1.1  1  NadA      Quinolinate synthetase A protein


Domain annotation for each model (and alignments):
>> NadA  Quinolinate synthetase A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.5   0.0  2.3e-110  4.1e-106       7     299 .]      52     387 ..      47     387 .. 0.94

  Alignments for each domain:
  == domain 1  score: 354.5 bits;  conditional E-value: 2.3e-110
                 HHH..HTEEEEEETTS-HHHHHH-SEEE-HHHHHHHCCC-.SSSEEEEES-HHHHHHHHHHS.TTSEEE-SSTT---HHHCT--HHHHHHHHHH..... CS
        NadA   7 kke..knavilaHnYqedeiqeiadfvGDSleLarkaaet.eaevivfcGVhFMaetakiLs.pekkvllpdleagCsladmitaeeveelkee..... 96 
                 k++  +++++l+H+Yq+de++++ad++GDS++Lar+aa++ +ae+ivfcGVhFMae+a+iL+ ++++v+lpdl+agCs+adm+  ++ve+++++     
  KIR60796.1  52 KAKlgDKVFVLGHHYQRDEVIQFADVTGDSFKLAREAAARpDAEYIVFCGVHFMAESADILTsERQRVVLPDLAAGCSMADMAVLTQVESAWDAltelg 150
                 3334499******************************9999*********************999*****************************99999 PP

                 .STTS-EEEESSS-HHHHTT-....SEEE-TTTHHHHH.HHS.S-SEEEEES-HHHHHHHH.HHH.........................SEEEEESSS CS
        NadA  97 .lpdaavvtYvNssaevKals....divcTSsnavkvv.eal.kekkilflPDqnLgryva.kklg........................ekkiilwkg 163
                    +++ vtY+Nssa++K ++    ++vcTSsna++ + +a+ +++k+lflPDq+Lgr++a  +lg                        ++k+ilw+g
  KIR60796.1 151 vAAQTVPVTYMNSSADIKGFVgrngGVVCTSSNAKRALdWAFeQGSKVLFLPDQHLGRNTAvLELGlslddcvlydphkpnggltpeqlrDAKMILWRG 249
                 7333444***********************************55****************955677************************99******* PP

                 S-GCGGG--CHHHHHHHHCSTT-EEEE-TTS-HHHHHCSSEE--HHHHCCCCGT.TSSSCEEEES-THHHHHHHHH-TTSEEE.....ECSSSSSTTGG CS
        NadA 164 aCsvHeefkaeeveelkeehpdakvlvHPEckeevveaadvvgSTsqiikavke.seakefiigTelglverlkkeapekefialsaeaaeeavCetMk 261
                 +CsvH +f+ ++ve+++++ p+++vlvHPEc++evv+aad+vgST++ii+a+++ ++++ +++gTel+lv+rl+ ++p+k++++l+++    + C+tM+
  KIR60796.1 250 HCSVHGRFTLDSVEDVRARVPGVNVLVHPECRHEVVTAADYVGSTEYIIRAIEAaPAGSAWAVGTELNLVRRLALAHPDKQIMFLDKA---VCYCSTMN 345
                 ****************************************************998999*************************88654...688***** PP

                 G--HHHHHHHHHHT-S.....B----HHHHHHHHHHHHHHHH CS
        NadA 262 kitleklleaLeelee....eeikvdeevaekAkkalermle 299
                 +i+l++l++aLeel +    ++i+vd+++a++A++al+rml+
  KIR60796.1 346 RIDLPHLVWALEELVAgrvvNQITVDADTAHHARVALDRMLA 387
                 *************999999777******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2487.09
//
Query:       KIR60797.1  [L=378]
Description: hypothetical protein TK50_23375 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.1e-114  383.2  10.1   1.3e-114  383.1  10.1    1.0  1  Gly_kinase  Glycerate kinase family


Domain annotation for each model (and alignments):
>> Gly_kinase  Glycerate kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.1  10.1  7.1e-119  1.3e-114       1     365 [.       3     376 ..       3     377 .. 0.96

  Alignments for each domain:
  == domain 1  score: 383.1 bits;  conditional E-value: 7.1e-119
  Gly_kinase   1 iviapdsFkgslsaaevaeaiaegikkaapeaevvklplaDGGeGtvealvaalggelvevevtgplgrpveakyglledektAviEmAeasGlklvpe 99 
                 ++++pd+F g+l a+eva+a+aeg++++a   ++   plaDGG G+v++l++algg++v+v + +plgrp++ ++++++d  tA++E+A+a+Gl+l+++
  KIR60797.1   3 VLLCPDKFAGTLPAQEVAAAVAEGWREVADGDDLLIRPLADGGPGFVAVLAEALGGRRVPVPTVDPLGRPTDGEILVTDD-GTAYLESAQACGLHLLAA 100
                 689************************98999*************************99*******************55.6***************** PP

  Gly_kinase 100 eernplktttyGvGelikaaldkgarkiiigiGGSatnDgGaGmlqaLGvrfldadgkelepggaaLaklasidlskldprlkdveitvacDvtnpLlG 198
                 +er+p  tt+yG+G l+ aa+++gar+++ig+GGS+tnDgGaG+l+aLGv+ ld+ g+ l+ ggaaLa++a +d     prl+ v++++a+Dv+npLlG
  KIR60797.1 101 AERDPKATTSYGLGALVTAAVEHGARTVVIGLGGSGTNDGGAGLLTALGVTPLDEAGRALPYGGAALAAVAGLD---GAPRLRGVTLVAATDVDNPLLG 196
                 *************************************************************************9...789******************* PP

  Gly_kinase 199 eeGaaavFgpQKGatpeqveeldaalehlaevlkkdl.g........pGaGAAGGlgaallaflgaelksGielvlelvgleeklkeadlviTGEGrlD 288
                  +Ga++v+gpQKGat+e+v  ldaale++a vl+kdl g        pG GAAGGlgaa+l  lg+++ sGi lv+e++gl ++l+ adlviTGEG++D
  KIR60797.1 197 LHGASNVYGPQKGATREDVLLLDAALERFAGVLEKDLpGcppglgalPGGGAAGGLGAAIL-ALGGRCASGIGLVTEAIGLPAALDAADLVITGEGSFD 294
                 ***********************************9954889999***************8.5************************************ PP

  Gly_kinase 289 sqtlsGKvpvgvaklakkagvpvialaGsveedaeeleeagidavfsildgp.....esleealeeaaelleeaaeqvarll 365
                 +q+l+GKv++gva +a+++gvp+++laG+v+++ +e+++ag++ ++s++++        l++al+++ae l+++ +++ar +
  KIR60797.1 295 HQSLRGKVVAGVAGAARDRGVPCVVLAGQVSTGRREAASAGVTDAYSLVEHFggeerGGLDAALSRPAEGLRQLGARLARQW 376
                 ************************************************9876211115689999*********999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2755.31
//
Query:       KIR60798.1  [L=122]
Description: iron-sulfur cluster insertion protein ErpA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-19   68.4   0.0    6.4e-19   68.2   0.0    1.0  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   3.6e-23   6.4e-19       4     111 .]      19     119 ..      16     119 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 3.6e-23
                  EE-HHHHHHHHHHHHCTTEC...EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEEEE CS
  Fe-S_biosyn   4 tlteaAaeklkkllaedkke...lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtlgLks 98 
                   lt+ Aa+k+k+l+++++++   lr++v+ gg       Cs g +y+l + ++   + d+v + +g++v+v+++s+++l  g ++df +   + g++ 
   KIR60798.1  19 VLTDVAAQKVKALIEQEGRDdlrLRVAVQPGG-------CS-GLRYQLFFDERS-LDGDVVTDYDGVEVVVDRMSAPYL-AGATIDFADRIDAQGFTI 106
                  58*****************9*88888899998.......**.********9999.************************.9***************** PP

                  ETCCEEEEEEEEE CS
  Fe-S_biosyn  99 dngilddnvglgk 111
                  dn+++ +++ +g+
   KIR60798.1 107 DNPNAGNSCACGD 119
                  ***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 939.90
//
Query:       KIR60799.1  [L=325]
Description: ribokinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-39  136.3   0.1    1.6e-39  136.0   0.1    1.0  1  PfkB      pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.0   0.1     9e-44   1.6e-39      15     297 ..      26     295 ..      12     299 .. 0.93

  Alignments for each domain:
  == domain 1  score: 136.0 bits;  conditional E-value: 9e-44
                 EEECSSHTTSEE.EESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTTSEEEEEEEEGGG CS
        PfkB  15 iavseklegelv.evktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvdedgertivfnrgaa 112
                 ia++ + + +l+  v +++ + GG++aN+A+++ +lg +  ++gavG D+  ++++++l+ +gvd+++v+++e ++t+  ++++d d+ +   f+ ga+
  KIR60799.1  26 IADQLD-KVSLSfLVDDLVLRRGGVAANIAFGMGQLGLRPILLGAVGADF--ADYRSWLERHGVDCESVHVSEVAHTARFVCTTDTDMCQIASFYAGAM 121
                 444444.8899999************************************..************************************9********** PP

                 GGHHHHHHHHHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTE..EEEEECESSSHHHHHHHHHHHCTESEEEEEHHHHHHHHTSCTHSHHHHH CS
        PfkB 113 adltkeeleededlleeadllyisgllsselpeavleelaeaaknggt..fdpnlldplgaqfkeallellaladllkpneeElealtgekledieeal 209
                 +++++ el  +++ l+  dl+ +++    ++p+a+l++ ae+++ g +  +dp +  +  +    ++  l+ +ad+l +ne+E + l ++++ + +++l
  KIR60799.1 122 SEARNIELAPVAQRLGGLDLVLVGA----NDPDAMLRHSAECRERGYAfvADPSQQLARMDG--ADVVGLIDGADYLMTNEYEKSLLQSKAGLSDAQLL 214
                 ********9***************9....*****************9988899999999984..889999*********************99999999 PP

                 HHHHHHHHTTSSEEEEEEGGGEEEEEE.TTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSSST CS
        PfkB 210 aalhklkakgaktvvvtlGkeGalvve.kdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvqkkgaia 297
                 +++        k  v tlG++G+ ++    ++++vp +++ ++vD+tG GD f +gf aal+ g  le+a++ ++ +A lv+++ g+++
  KIR60799.1 215 DRV--------KIRVTTLGSNGVEIAGrDFDTIHVPIAREAQAVDPTGVGDGFRAGFFAALSWGLGLERAAQVGSLLATLVLETVGTQE 295
                 996........569*************55567777777*************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 2049.10
//
Query:       KIR60800.1  [L=69]
Description: preprotein translocase subunit TatB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-21   74.8   0.0      4e-21   74.6   0.0    1.0  1  TusA      Sulfurtransferase TusA


Domain annotation for each model (and alignments):
>> TusA  Sulfurtransferase TusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.0   2.2e-25     4e-21       3      64 ..       2      63 ..       1      66 [. 0.94

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 2.2e-25
                EEBTT-STTCCHHHHHHHHCCCGCT-EEEEEESSCHHHHHHHHHHHHHTEEEEEEE-GCC-E CS
        TusA  3 lDlrGlvCPePllklkkalekleegevlevladdpaatediprfakklghelveveeedgey 64
                lD+rG++CP+P++kl + l +l+ g+vl+vladdpaa  dip++++ +g e+v+  ee+  y
  KIR60800.1  2 LDCRGQRCPLPVIKLARRLPELPVGAVLRVLADDPAAAVDIPAWCRMRGQEFVAAHEEGPGY 63
                9****************************************************998887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 584.99
//
Query:       KIR60801.1  [L=383]
Description: aminotransferase V [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-39  135.0   0.0    1.4e-38  132.9   0.0    1.8  1  Aminotran_5      Aminotransferase class-V
    4.7e-06   26.1   0.1    7.8e-06   25.4   0.1    1.3  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   0.0   1.5e-42   1.4e-38       1     371 []       6     363 ..       6     363 .. 0.89

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 1.5e-42
                  EEEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHH.HHHHHHHHCCCC-TTTSEEEEETTS CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtte.ainlvalslarslkpgdeivvteae 97 
                  +yld a  ++  + + +al   + d  a + r ++  + +a + +++are  a+ ++++  +e+ ft ++t  a ++v+ +la + + g + v +++e
   KIR60801.1   6 VYLDAATAAPPHPVARQALLAALDDGWADPAR-LYGQARRARQLLDAAREAAAATLGVRA-DELSFTPSGTAaAHSAVLGGLAGRRRVGATLVHSAIE 101
                  67776555555555567889999999999966.6666778*******************7.******777776999******999************* PP

                  HGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--.TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESE CS
  Aminotran_5  98 hhanlvpwqelakrtgakvkvipldeegeldldeleklln.ektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDf 194
                  h a l ++q+   + g   + +p+d+ g+ldld+++++++ + ++l a+  +s + Gt+qpv+  ++++ ++g+ + vDaaq vg  p+    + v  
   KIR60801.1 102 HSAVLHAAQRHV-AGGGSAVSVPVDRLGRLDLDAFADAVRaPGVALAALIGASHEVGTVQPVAPAAAACAAAGVPLYVDAAQLVGRVPVPA-GWSV-- 195
                  *****9999987.667777799*************999977***********************************************984.4555.. PP

                  EEEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC CS
  Aminotran_5 195 lafsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlk 292
                  l++s+hK  gP+G+G+l+vrk    ++e   +  e        e       s    G  n +++++ +a l+   + +++a +++ + l +++++r++
   KIR60801.1 196 LTASAHKWGGPPGVGLLVVRK--GTRWESPWPADE-------RE-------SGRTPGVVNLPAVVAAAASLRAA-AADAAAEATRLAPLVDRIRARVA 276
                  9********************..666644444444.......33.......33567889999999999999998.8899999999999********98 PP

                  T.STTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTT....HHHHHHTT.S....-EEEEE--TTS-HHHHHHH CS
  Aminotran_5 293 s.lpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhca....qplmkrlale....gtvRaSlyiynteeevdrl 371
                  + +p+v+++g d+ +r +++v+f+  +v+ e + ++Ld++g av+sG++c+    +p++++ a+     g vR+Sl++ +t ++v+r+
   KIR60801.1 277 AeVPDVEVVG-DPVDRLPHLVTFSCLYVDGEALLHALDRRGFAVSSGSSCTsstlRPSHVLEAMGvlshGNVRVSLHRETTVADVERF 363
                  77******99.899*************************************999999999999989999*****************97 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   8.7e-10   7.8e-06      27     171 ..      38     183 ..      12     200 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 8.7e-10
                      CCT--HHHHHHHHHHHHHTT-SEEE......EES-HHHHHHHHH.HHH-..-TTEEEEEETT.-HHHHSSTTHHHHCC--EEEEE-EBTTTBE- CS
  Beta_elim_lyase  27 sYgedktvnrLedavaelfgkeaal......fvpqGtaAnsill.kill..qrgeevivtep.ahihfdetgaiaelagvklrdlknkeaGkmd 110
                       Yg+++  ++L da++e++ +  ++      f+p+GtaA + ++   l+  +r  + +v++   h     + +  + +g  ++ ++ ++ G +d
       KIR60801.1  38 LYGQARRARQLLDAAREAAAATLGVradelsFTPSGTAAAHSAVlGGLAgrRRVGATLVHSAiEHSAVLHAAQRHVAGGGSAVSVPVDRLGRLD 131
                      5**************99554444443333458*****99877775444444666777777777788888887777889999************* PP

                      HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTH CS
  Beta_elim_lyase 111 lekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARf 171
                      l+++++a+++ g       + ++   +++  G+v ++   + +aa + + g+pl +D+A +
       KIR60801.1 132 LDAFADAVRAPGV----ALAALIGASHEV--GTVQPV---APAAAACAAAGVPLYVDAAQL 183
                      **********666....333344566776..777665...578899999*********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2773.97
//
Query:       KIR60802.1  [L=323]
Description: cytochrome C oxidase subunit II [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-17   62.3   0.2    1.4e-16   60.5   0.2    1.8  1  COX2             Cytochrome C oxidase subunit II, periplasmic
    6.5e-05   23.0   0.0    0.00014   21.9   0.0    1.5  1  COX2_TM          Cytochrome C oxidase subunit II, transmembra
  ------ inclusion threshold ------
      0.033   14.1   2.2      0.084   12.8   1.2    2.0  2  DctQ             Tripartite ATP-independent periplasmic trans
      0.077   13.0   0.7       0.14   12.2   0.2    1.6  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
      0.081   13.1   0.1       0.49   10.6   0.2    2.0  2  bMG6             Bacterial macroglobulin domain 6


Domain annotation for each model (and alignments):
>> COX2  Cytochrome C oxidase subunit II, periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.2   3.8e-20   1.4e-16       2     117 ..     154     263 ..     153     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 3.8e-20
        COX2   2 tikaiGhqwywsyeytdfedlefdsylvpeedleegelrllevdnrvvlpvetkirllvtaedvlhsfavpslgvkvdavpGrlnqvs..llidreGvf 98 
                 t++ +  +w w+++y d +    d+  v       ++l   ev   +vlp  ++ir+  t++dv+hsf vp +  k d++pG + +v    + d eG +
  KIR60802.1 154 TVEVVAFKWNWQFNYRDGQG--KDANTVA------STLGTSEVIPILVLPTGRSIRFEETSKDVVHSFWVPEMLFKRDVMPGNIRNVFevSSLDAEGAY 244
                 77888899999999999883..4444443......345556777889*************************************99861145789**** PP

        COX2  99 yGqcselcGvnhssmpivv 117
                  G+c+elcG  h++m   +
  KIR60802.1 245 VGRCAELCGSYHAFMNFEL 263
                 ***************8766 PP

>> COX2_TM  Cytochrome C oxidase subunit II, transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.9e-08   0.00014      14      82 ..      66     133 ..      57     138 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.9e-08
     COX2_TM  14 splmeeleelhdyilliltlililVlyilvlilvefrrrknkitakylvhgqeiEiiWTiiPalilili 82 
                 +p+ + + +l     + ++++ ++V ++++ ++v++r+r n+++ + +  +  +E+++Ti P li+ ++
  KIR60802.1  66 TPESHRMYDLWIASCIAALAVGVFVWGLIFWCVVRYRKRGNELPVQ-TRYNLPMEFLYTIAPILIVSVL 133
                 6777777777777778899999**********************88.888899************9765 PP

>> DctQ  Tripartite ATP-independent periplasmic transporters, DctQ component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.2   2.4e-05     0.084      68     124 ..      77     138 ..      66     146 .. 0.70
   2 ?   -0.7   0.0      0.35   1.3e+03      92     114 ..     175     197 ..     157     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.4e-05
        DctQ  68 iadllallfaavliwagw...levaaalfeettpvlg..lplwwvylvlpigaallalvala 124
                 ia  +a+l+++v++w ++   ++ + ++++e     +  lp+ + y+++pi  + +++++ a
  KIR60802.1  77 IASCIAALAVGVFVWGLIfwcVVRYRKRGNELPVQTRynLPMEFLYTIAPILIVSVLFYYTA 138
                 445566666667777777765566666666666666688*************9998887655 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.35
        DctQ  92 lfeettpvlglplwwvylvlpig 114
                 + +++ ++lg +  ++ lvlp+g
  KIR60802.1 175 DANTVASTLGTSEVIPILVLPTG 197
                 56889999************987 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   3.8e-05      0.14      38     102 ..      33     113 ..      23     118 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.8e-05
  Phage_holin_3_6  38 gllgaagvlallalllllvala...lal........aa....lwlaalivaavllvlagvlalvglkklkkakp.lperti 102
                      + lg++g+ +l++l+   v+     ++         +     lw+a  i a+++ v  + l+++ + + +k+   lp +t+
       KIR60802.1  33 AGLGLGGAALLVSLTGCDVGKTfggFGWpqggitpeSHrmydLWIASCIAALAVGVFVWGLIFWCVVRYRKRGNeLPVQTR 113
                      222223333333333333333233333355555554114579999999999888888888888888777776666999997 PP

>> bMG6  Bacterial macroglobulin domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00014      0.49      30      64 ..     147     181 ..     136     188 .. 0.81
   2 ?   -0.5   0.0      0.37   1.3e+03       5      31 ..     219     245 ..     217     249 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00014
        bMG6  30 kvatkelkvklyreerdyqWeyssdggwryestek 64 
                 ++++ +++v+++  ++++q++y++++g + +++ +
  KIR60802.1 147 TTKNPDVTVEVVAFKWNWQFNYRDGQGKDANTVAS 181
                 456799*******************9998887766 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.37
        bMG6   5 lfddgeveegseaefeivavdadgkkv 31 
                 lf+++ ++ +    fe+ ++da+g+ v
  KIR60802.1 219 LFKRDVMPGNIRNVFEVSSLDAEGAYV 245
                 688899999999***********9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2511.18
//
Query:       KIR60803.1  [L=142]
Description: cytochrome oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-47  160.2   4.8      3e-47  160.1   4.8    1.0  1  Cyt_c_ox_IV  Cytochrome c oxidase subunit IV
  ------ inclusion threshold ------
      0.036   13.8  13.0      0.051   13.3  13.0    1.2  1  Yip1         Yip1 domain
       0.12   12.9   2.5        1.3    9.6   0.2    2.1  2  DUF4231      Protein of unknown function (DUF4231)
       0.12   12.0  13.3       0.58    9.8   0.8    2.1  2  DUF4131      Domain of unknown function (DUF4131)
       0.27   10.8   1.5       0.42   10.2   1.5    1.2  1  DUF3153      Protein of unknown function (DUF3153)
        3.8    7.7  12.3         13    5.9  12.3    1.7  1  EI24         Etoposide-induced protein 2.4 (EI24)


Domain annotation for each model (and alignments):
>> Cyt_c_ox_IV  Cytochrome c oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.1   4.8     1e-50     3e-47       1     131 [.       1     137 [.       1     138 [. 0.98

  Alignments for each domain:
  == domain 1  score: 160.1 bits;  conditional E-value: 1e-50
  Cyt_c_ox_IV   1 mkveaklflllavffllvavvYgvltkie.....elvGttalvltgglallvgtylafvarridarpedredaeiadgaGelGffsPhSwwPlvlala 93 
                  mk+e ++fl++a f++ ++++Yg +t  +     e+vGt+al+l++ l+ ++g +++fv+rrid rpedr d+eiadgaGe+GffsP S+wP+ lala
   KIR60803.1   1 MKTEWRIFLIIAGFLFGATILYGAWTYGDsggqvEWVGTVALLLSFLLCSMCGGFFWFVSRRIDLRPEDRPDGEIADGAGEIGFFSPGSYWPFGLALA 98 
                  9*************************9889999***************************************************************** PP

  Cyt_c_ox_IV  94 aalaalglal.gwWllligvvlvlialvGlvfeyyrgee 131
                  aa+a lgl++ ++Wll +g+v+v++a++Gl+feyy g++
   KIR60803.1  99 AAIAGLGLVFwQFWLLGLGLVTVVFAACGLLFEYYSGTR 137
                  ***********************************9975 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3  13.0   1.7e-05     0.051      71     151 ..       8     121 ..       6     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.7e-05
        Yip1  71 lglllgllllalllhliakllggkgsfkqtlsvvgyallPlilgaliaillllllgt...................................llllvgl 134
                 +++++g+l+ a +l+ +a+++g +g   +++  v++ l  l+ ++   +++++++                                     +++++gl
  KIR60803.1   8 FLIIAGFLFGATILY-GAWTYGDSGGQVEWVGTVALLLSFLLCSMCG-GFFWFVSRRidlrpedrpdgeiadgageigffspgsywpfglalAAAIAGL 104
                 444677777777777.5*****8888888888888876666555555.4455555558899************************************** PP

        Yip1 135 laliWslvllylglkaa 151
                  +++W+++ll+lgl ++
  KIR60803.1 105 GLVFWQFWLLGLGLVTV 121
                 **************886 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2   0.00043       1.3      21      56 ..       6      47 ..       3      66 .. 0.70
   2 ?    3.6   0.2      0.03        91      31      71 ..      97     134 ..      91     142 .] 0.75

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00043
     DUF4231 21 rlitivlgallpilvs......sklgagvsvlkiltallsal 56
                r+++i++g+l+ +++       +++g +v++   +++lls l
  KIR60803.1  6 RIFLIIAGFLFGATILygawtyGDSGGQVEWVGTVALLLSFL 47
                899****************66655555555555555555543 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.03
     DUF4231  31 lpilvssklgagvsvlkiltallsalvailaaleeffryke 71 
                 l+++++   g g  ++++  ++l++++++ aa   +f+y  
  KIR60803.1  97 LAAAIA---GLGLVFWQFWLLGLGLVTVVFAACGLLFEYYS 134
                 333333...678899999999***********999999965 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.8   0.00019      0.58       9      54 ..       8      62 ..       3      73 .. 0.72
   2 ?    6.9   5.8    0.0015       4.4       4      53 ..      89     136 ..      86     141 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00019
     DUF4131  9 llalllllllllllllrr.........rprrrvllllllllllallgfalrapqp 54
                +l+++++l+ + +l+  +          +  +v+lll++ll+ +++gf++ + ++
  KIR60803.1  8 FLIIAGFLFGATILYGAWtygdsggqvEWVGTVALLLSFLLCSMCGGFFWFVSRR 62
                3334444444444444445778999999999999**************9998876 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0015
     DUF4131   4 plalvllalllllllllllllrrrprrrvllllllllllallgfalrapq 53 
                 +++ + lal+++++ l l+++  + +   l+l+++++++++l f +++ +
  KIR60803.1  89 SYWPFGLALAAAIAGLGLVFW--QFWLLGLGLVTVVFAACGLLFEYYSGT 136
                 455555555555555555555..777888888888888888877666655 PP

>> DUF3153  Protein of unknown function (DUF3153)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.5   0.00014      0.42     156     179 ..     103     126 ..      98     132 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00014
     DUF3153 156 hLeasfWlpspLgiGlllilllll 179
                  L + fW+ + Lg+Gl++++ +++
  KIR60803.1 103 GLGLVFWQFWLLGLGLVTVVFAAC 126
                 68899*************997765 PP

>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  12.3    0.0045        13      19      67 ..      42     125 ..       5     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0045
                 HHHHHHHHHHHHHHHHHHHH..............................-....TTHHHHHHHHHHHHHHHHHH..HHHHHHHH CS
        EI24  19 lllplllnlllfllllvlll..............................w....vllasllvllllllplwlfp..lvalllaa 67 
                 lll++ll + + + ++++++                              w    +l+a++++l l+++ +wl+   lv++++aa
  KIR60803.1  42 LLLSFLLCSMCGG-FFWFVSrridlrpedrpdgeiadgageigffspgsyWpfglALAAAIAGLGLVFWQFWLLGlgLVTVVFAA 125
                 4666666666655.6666669*******999999999999999888888879999999999999999999999998777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 997.65
//
Query:       KIR60804.1  [L=71]
Description: hypothetical protein TK50_23410 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 481.94
//
Query:       KIR60805.1  [L=348]
Description: anthranilate phosphoribosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-80  270.6   0.4    1.7e-80  270.3   0.4    1.1  1  Glycos_transf_3  Glycosyl transferase family, a/b domain
    5.5e-19   67.8   0.8    5.5e-19   67.8   0.8    2.3  2  Glycos_trans_3N  Glycosyl transferase family, helical bundle 


Domain annotation for each model (and alignments):
>> Glycos_transf_3  Glycosyl transferase family, a/b domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.3   0.4   1.9e-84   1.7e-80       3     252 ..      81     334 ..      79     335 .. 0.97

  Alignments for each domain:
  == domain 1  score: 270.3 bits;  conditional E-value: 1.9e-84
                      TBEEEEESS-SSSTHHHHHHHHHHHHHHTT-BEEEEE-STCTTCS-HHHHHCTST--ST--HHHHHHHHHHHSEEEEEHHSSSSHHHHHHHHHH CS
  Glycos_transf_3   3 dlvDivgTGGdgantfNiStaaaivvAaaGvkvakhgnrsvssksGsaDvLealgvnleltpeeveklleevgvgflfapeyhkamkhvapvrr 96 
                       ++D+vgTGGd a t+NiSt+aa+vvA+aGv+v+khgnr++ss++G+aD+Le lgv l+ltpe v++++ evg+gf+fa ++h++m+h+ pvrr
       KIR60805.1  81 SALDVVGTGGDLAHTVNISTMAALVVAGAGVRVVKHGNRAASSSCGTADLLEFLGVPLDLTPEGVARCVTEVGIGFCFAGRFHPGMRHAGPVRR 174
                      689******************************************************************************************* PP

                      HHTT.-SSHHHCHHHHHT..SEEEEHHHHHHHHTCHSEEEEEEEESTTSSCCS.TSHHHHHHHHHHHHHHHHTTEEEEEEEEEGSSTSSSEEES CS
  Glycos_transf_3  97 elgirTvfnlLGPLinparvkkqllgvyskelaeklaevlkelgveralvvhg.dGldevsllakttvaelkdgeiteytlepedfglkraele 189
                      elg++T fn LGPL+npar+++  +g++++ +a+ +a+v+++ +  ++lv+ g dGlde++++a t v+ ++ g+++e+ l++ d+g+ r +l 
       KIR60805.1 175 ELGVPTFFNFLGPLTNPARPRAGAVGCFDPRMAPVMAAVFAA-RGDSVLVLRGeDGLDEFTTAAPTRVWAAQGGTVREALLDATDLGVPRVTLA 267
                      *****************************************9.999************************************************ PP

                      HHHHSSHHHHHHHHTTHHTSCHHHHHHHHHHHHHHHHHHHTTSSSS.....HHHHHHHHHHHHHTSHH CS
  Glycos_transf_3 190 aleggepkenaeilkavlegkksaakrdlvllnagaalvlagkads.....lkegvakaeevidsGkA 252
                      +l+gg++  na + +++l+g+ + + rd+vl+na+aal ++g +       l++g+a+a+e+idsG+A
       KIR60805.1 268 DLRGGDAAYNAGVARRLLAGEAGPV-RDAVLVNAAAALATQGPLGGdlteaLRAGMARAAEAIDSGAA 334
                      ************************9.*************9987654444559***************9 PP

>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.8   6.1e-23   5.5e-19       3      60 ..       9      66 ..       7      69 .. 0.95
   2 ?   -0.9   0.2      0.16   1.5e+03      39      58 ..     301     325 ..     269     327 .. 0.71

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 6.1e-23
                     HHHHHHTT.---HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHH CS
  Glycos_trans_3N  3 iikklrdgeeLtaeeirfaihgilkgevtdaqiaAfLmAlrlkGetaeEiaalaeAmr 60
                     ++  l++geeL+ ++ ++a+ +i++g++ +aqia f++Alr+kGet++E+a+l+eAm+
       KIR60805.1  9 LLGALLRGEELSTADTAWAMGEIMSGSAAPAQIAGFAVALRAKGETPAEVAGLVEAML 66
                     67889****************************************************8 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.16
                      HHHHHHH-.....--HHHHHHHHHH CS
  Glycos_trans_3N  39 LmAlrlkG.....etaeEiaalaeA 58 
                      ++Al ++G     +t++  a++a+A
       KIR60805.1 301 AAALATQGplggdLTEALRAGMARA 325
                      4566666665566777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2494.31
//
Query:       KIR60806.1  [L=131]
Description: chemotaxis protein CheY [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0011   19.1   0.0     0.0013   18.9   0.0    1.2  1  Response_reg   Response regulator receiver domain
  ------ inclusion threshold ------
       0.18   12.1   0.0       0.26   11.5   0.0    1.2  1  Peptidase_M23  Peptidase family M23


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.5e-07    0.0013       1      93 [.       8     105 ..       8     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.5e-07
                   EEEESSSHHHHHHHHHHHH...HTTEEEEE..EESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT.TTSEEEEEESSTSHHHHHHHHH CS
  Response_reg   1 vlivdDdplvrellrqlle...eegyeeva..eaedgkealellkeekvdlillDinmpgmdGlellkeireed.pelpviiltahseeedavealk 91 
                   vl+  Ddp vr+ +r ++      g+ +v+   a+d + +++l++e ++dl+llD + +   Gl ++++i+++  + +p  ++ a++++  + ++ +
    KIR60806.1   8 VLLYSDDPQVRDRMRLAVGtrpAPGL-RVEfvDASDYAGCVRLVDEYEIDLMLLDGEASPGGGLGIARQIKDDRdDAPPTCLVIARAADRWLAAYAE 103
                   67778999999999999997766788.7775578999999******************************877745566666666666555555555 PP

                   CT CS
  Response_reg  92 ag 93 
                   ++
    KIR60806.1 104 VD 105
                   55 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     3e-05      0.26      36      73 ..      88     125 ..      75     130 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3e-05
                    EEEEEECTCEEEEEEEESEESS-TTEEE-TTCEEEEEB CS
  Peptidase_M23  36 vviidhgdgystlyahlskisvkegqkVkaGqvIGtvg 73 
                    +vi +++d +   ya ++++ v++ + V +G+++++  
     KIR60806.1  88 LVIARAADRWLAAYAEVDATLVHPLDPVTTGATVAELL 125
                    799999****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 960.37
//
Query:       KIR60807.1  [L=322]
Description: cytochrome C oxidase assembly protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-76  255.8  27.1    4.3e-76  255.4  27.1    1.1  1  Caa3_CtaG  Cytochrome c oxidase caa3 assembly factor (Caa3_Ct


Domain annotation for each model (and alignments):
>> Caa3_CtaG  Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.4  27.1   2.4e-80   4.3e-76       2     233 .]      56     293 ..      55     293 .. 0.98

  Alignments for each domain:
  == domain 1  score: 255.4 bits;  conditional E-value: 2.4e-80
   Caa3_CtaG   2 lYllgvrrlrrrgd.wpvgrtvaFl.lGllllalalgspldvyghalfsaHmvqhllllmvaPpllvlGaPvtlllralpralre.llrllrsrvlrvl 97 
                 lYl+gv+rlr rgd wpv+rtv+Fl  Gl  +a++++s+l++y  al+s+Hmvqh++l+mv P++l+lGaPvtl+lr+lp ++r+ ll++++srv+rv 
  KIR60807.1  56 LYLYGVYRLRLRGDrWPVARTVFFLgPGLGGIAAVTVSGLHAYDTALLSVHMVQHMVLSMVSPIFLALGAPVTLALRTLPVRPRKrLLAIVHSRVARVY 154
                 8***********966**********99********************************************************999************* PP

   Caa3_CtaG  98 thPlvalllfvallyllylpplfdaalrsealhalmhlhfllaGllfwwpvlgpdpeprrlspllrllylfaamvlhaflgallmfastvlypayy..l 194
                 t Plva+++fv+ +++ly+++l++++l+++++h+l+h+hf+++G++f+wp+lg dp p r+++++r+l++++++++h++lg+++m+++t+ + ++y  l
  KIR60807.1 155 TFPLVAFAIFVVNPFALYFSDLYRYTLEHAWAHELVHAHFIMTGCVFFWPLLGLDPLPGRWPYPARALLMVLSVPFHTVLGLTIMQSTTLFGGDWYpsL 253
                 ************************************************************************************************887 PP

   Caa3_CtaG 195 a.swgsplaDqqlGGlimwvlgelvyllvllalfvrwlrs 233
                 + +w +p+aDq ++G+i+w++ge+v +++l++l+v+w+r+
  KIR60807.1 254 GlTWSDPAADQVVAGGILWAGGEFVSVTMLAVLVVQWVRQ 293
                 79***********************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2164.61
//
Query:       KIR60808.1  [L=199]
Description: cytochrome B [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-23   84.4  16.4    1.5e-23   84.0  16.4    1.1  1  COX3      Cytochrome c oxidase subunit III
    0.00097   19.3   1.7    0.00097   19.3   1.7    1.6  1  Jagunal   Jagunal, ER re-organisation during oogenesis


Domain annotation for each model (and alignments):
>> COX3  Cytochrome c oxidase subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0  16.4   1.7e-27   1.5e-23      74     255 ..      19     197 ..       9     199 .] 0.87

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 1.7e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--GGGTSSSS-TT-----TTSHHHHH..HHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH CS
        COX3  74 kGlklGlilfiisevllflalfwaffhsalsPtvelGatwpPvGikavnPlevPlln..tiillssGvtvtyahhsliegnrkkalkgllltillavlf 170
                 + + +G i+++ se+++f+alf  +f           ++w+       + l++P     t+il+ s vt     ++  +g+ +   +  ++t++++++f
  KIR60808.1  19 NMVSVGTIVWLSSELMFFAALFAMYFSIRA----AAPEQWAK----HTEHLNIPYATtfTVILVLSSVTCQLGVFAAEKGDVHALRRWFTITFVMGLIF 109
                 56789*******************996533....23468975....556666776542279*********************999999*********** PP

                 HHHHHHHHHH...-SS-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--BSSB-HHHHHHHHHHHHHHHHHHHHHHHTTT CS
        COX3 171 tllqaveyle...asftisdgvyGsvfylatGlhglhviigtillavallrllkyhltknhhlGfeaailywhfvdvvwlflyvsvyw 255
                 +l q  ey+        i    yGs+fyl+tG+hglhv  g + +++ + r++   +t    +   +  +ywhfvdvvw+ ly ++yw
  KIR60808.1 110 VLGQLNEYVTlvhEGVKINADGYGSMFYLTTGFHGLHVTGGLVAFIIFMVRTTMGRFTPAQATSAIVVSYYWHFVDVVWIGLYAMIYW 197
                 ********86222567899999*********************9*******************************************9 PP

>> Jagunal  Jagunal, ER re-organisation during oogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   1.7   1.1e-07   0.00097      49     138 ..      40     126 ..       9     165 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.1e-07
     Jagunal  49 llmlakllaeildrldifileveelqlpkpllWeYvwllSivpsllgllalkknkikllklyligtlvlgllpllygaveylkevleylk 138
                 ++m + + a+     + +  + e+l++p++++   + +lS v++ lg+ a +k +++ l+   ++t+v+gl+ +l  + ey++ v e +k
  KIR60808.1  40 FAMYFSIRAAA---PEQWAKHTEHLNIPYATTFTVILVLSSVTCQLGVFAAEKGDVHALRRWFTITFVMGLIFVLGQLNEYVTLVHEGVK 126
                 22333333333...33466679*************************************************9999888888777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1497.54
//
Query:       KIR60809.1  [L=278]
Description: cytochrome C [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-23   81.5   0.1    3.2e-13   49.8   0.0    2.3  2  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
    1.3e-13   51.9   3.6    2.3e-05   25.4   0.1    3.9  2  Cytochrom_C      Cytochrome c
    0.00046   19.9   0.2        0.5   10.1   0.0    2.5  2  Cytochrom_C550   Cytochrome c-550 domain
     0.0093   15.6   0.2        1.2    8.7   0.0    2.9  3  Cytochrome-c551  Photosystem P840 reaction-centre cytochrome 
     0.0095   16.6   0.0        0.8   10.3   0.0    2.2  2  CCP_MauG         Di-haem cytochrome c peroxidase
  ------ inclusion threshold ------
      0.026   14.3   0.3        3.1    7.6   0.0    2.3  2  DUF2157          Predicted membrane protein (DUF2157)
      0.028   14.8   0.1        4.7    7.6   0.0    3.0  3  DUF1924          Domain of unknown function (DUF1924)
      0.038   14.9   0.1        1.1   10.2   0.0    2.2  2  Cytochrome_C554  Cytochrome c554 and c-prime
      0.051   13.5   0.0        7.1    6.6   0.0    3.4  4  Haem_bd          Haem-binding domain
       0.18   11.8   0.0       0.55   10.2   0.0    1.8  2  MHC2-interact    CLIP, MHC2 interacting
        2.1    8.0   4.8       0.93    9.1   0.3    2.3  2  MCR              Magnetochrome domain


Domain annotation for each model (and alignments):
>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   3.6e-10   5.9e-07       2      67 .]      65     140 ..      64     140 .. 0.78
   2 !   49.8   0.0     2e-16   3.2e-13       1      67 []     158     232 ..     158     232 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.6e-10
  Cytochrome_CBB3   2 aaaaGaalykknCasCHgkggag.....pslagrdwepdalvdiiknGkgaMp.....afgg..qlsdeelwalvaYl 67 
                      aaa+G+al++ +C++CHg +++g     psl g + +   ++  +  G++ M+     a+++   ++de++++l +Y+
       KIR60809.1  65 AAAEGKALFDVSCVTCHGRNAQGvdgrgPSLIGVGSA--SVEFQVSSGRMPMArqeaqAMRKppVFTDEQVRQLGQYV 140
                      789***************5555555566****99765..6777778887655566655777779**********9997 PP

  == domain 2  score: 49.8 bits;  conditional E-value: 2e-16
  Cytochrome_CBB3   1 aaaaaGaalykknCasCHgkggagpsla.grdwep.......dalvdiiknGkgaMpafgg.qlsdeelwalvaYl 67 
                      a++a+G +l++ nC++CH+ gg+g +l+ g+  +p       ++++++   G + Mp fg+ q+++e++++++aY+
       KIR60809.1 158 ANLATGGELFRINCSQCHAFGGGGGALSsGK-YAPslrpasdRQIYAAMLSGPQNMPVFGDnQITPEQKADIIAYI 232
                      5789***************887876666333.33333346669********************************8 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   1.4e-08   2.3e-05       1      90 [.      66     142 ..      66     144 .. 0.68
   2 !   20.0   0.6   7.3e-07    0.0012       2      89 ..     161     233 ..     160     235 .. 0.62

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.4e-08
                  X--HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHHHHHT CS
  Cytochrom_C   1 aarGkelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaaYLks 90 
                  aa+Gk+lf+  C++CHg +++g+ +  gp l g++++  +++  + ++          +++ ++++ + p      t++++++l  Y++ 
   KIR60809.1  66 AAEGKALFDVSCVTCHGRNAQGVDGR-GPSLIGVGSASVEFQVSSGRMPM--------ARQEAQAMRKPP----VFTDEQVRQLGQYVQE 142
                  699*****99************9866.9*****99954444443333322........233333223333....3788888888888876 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 7.3e-07
                  --HHHHHHTTGGGTB-SSSBSSS.......--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHHHHH CS
  Cytochrom_C   2 arGkelftanCaaCHgvegggakqgg...gptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaaYLk 89 
                  a G elf  nC +CH  +ggg +  +   +p l+ a +r+ +a             a+  ++++ ++++      +++t+++ ad++aY++
   KIR60809.1 161 ATGGELFRINCSQCHAFGGGGGALSSgkyAPSLRPASDRQIYA-------------AMLSGPQNMPVFGD-----NQITPEQKADIIAYIQ 233
                  6799***99***********98633223333333333333332.............23445555555544.....4688999999999987 PP

>> Cytochrom_C550  Cytochrome c-550 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0023       3.7      26      42 ..      66      82 ..      55      89 .. 0.87
   2 !   10.1   0.0   0.00031       0.5      25      44 ..     159     178 ..     154     193 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0023
                    HHHHHHHHHHHTHHHHG CS
  Cytochrom_C550 26 lkkgkklFeaeCaqCHv 42
                    +++gk lF+ +C +CH 
      KIR60809.1 66 AAEGKALFDVSCVTCHG 82
                    579*************5 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00031
                     HHHHHHHHHHHHTHHHHGGG CS
  Cytochrom_C550  25 qlkkgkklFeaeCaqCHvgG 44 
                     +l++g  lF+ +C+qCH+ G
      KIR60809.1 159 NLATGGELFRINCSQCHAFG 178
                     688999***********976 PP

>> Cytochrome-c551  Photosystem P840 reaction-centre cytochrome c-551
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.045        74     137     159 ..      61      83 ..      29      90 .. 0.77
   2 !    8.7   0.0   0.00073       1.2     117     161 ..     133     179 ..     128     234 .. 0.89
   3 ?    0.1   0.2       0.3   4.9e+02      84     105 ..     259     277 ..     256     278 .] 0.79

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.045
                      -TT--HHHHHHHHHHHTTSSS-S CS
  Cytochrome-c551 137 paGedlaaakklvdrrcnkchal 159
                      p   + a+ k+l+d  c  ch  
       KIR60809.1  61 PLTGAAAEGKALFDVSCVTCHGR 83 
                      5566778999***********75 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00073
                      XXXXXXXXXXXXXX-SS---..-TT--HHHHHHHHHHHTTSSS-SHH CS
  Cytochrome-c551 117 vreldaflekpaaaedvlva..paGedlaaakklvdrrcnkchalka 161
                      vr+l ++ ++   + +v+ +   +G +la+  +l+  +c++cha+  
       KIR60809.1 133 VRQLGQYVQELGGGPQVPEGdlREGANLATGGELFRINCSQCHAFGG 179
                      889999999999999999997778*******************9865 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.3
                      XXXXXXXXXXXXXXXXXXXXXX CS
  Cytochrome-c551  84 lsilvivavmfvslevvwekGr 105
                      + +++iva++f+sl   w+ G+
       KIR60809.1 259 IFLIGIVALVFASL---WIAGK 277
                      456789*******9...88776 PP

>> CCP_MauG  Di-haem cytochrome c peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00049       0.8      21      73 ..      74     135 ..      71     155 .. 0.58
   2 ?    4.2   0.0     0.039        63      21      43 ..     168     187 ..     163     240 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00049
                 S--HHHHSGCCCTTS-SSS.SBBEGGGEBSS......S----STTGGG..SSSBSTTEEBSS CS
    CCP_MauG  21 kisCasCHdpaagftdglk.vslgvegrlga......rnaptllnaaf..nkglfwdgraes 73 
                 ++sC +CH  +a++ dg+    +gv++  ++      r +++   a++  ++ +f d+++++
  KIR60809.1  74 DVSCVTCHGRNAQGVDGRGpSLIGVGSASVEfqvssgRMPMARQEAQAmrKPPVFTDEQVRQ 135
                 68******999999998655556642222222222223333333333211235555555555 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.039
                 S--HHHHSGCCCTTS-SSSSBBE CS
    CCP_MauG  21 kisCasCHdpaagftdglkvslg 43 
                 +i+C++CH    g+    ++s g
  KIR60809.1 168 RINCSQCHAFGGGGG---ALSSG 187
                 699*****7433322...23333 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.017        28      17      55 ..      11      51 ..       4      55 .. 0.67
   2 ?    7.6   0.0    0.0019       3.1       7      58 ..     218     273 ..     216     276 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.017
     DUF2157 17 llaryeaeeresa.rrrsf..leallvlGalllglGlilfvA 55
                llar + e+++++ r+r +  + a+ +++al l+ G  +++A
  KIR60809.1 11 LLARLRGERSAARsRGR-RrlGAAVRLIAALTLAGGAYTVFA 51
                45555544333331222.235999999*********999998 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0019
     DUF2157   7 glIteeqaqallaryeaeeresarrrsf...leallvlGalllglGlilfv.AanW 58 
                 + It+eq  +++a+ +   ++ +++  f   + + ++ G  ++++G++ +v A++W
  KIR60809.1 218 NQITPEQKADIIAYIQDTLKHDQDQGGFnlgRYGPSTEGLAIFLIGIVALVfASLW 273
                 579*************9999999888889997777777777777777654315556 PP

>> DUF1924  Domain of unknown function (DUF1924)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0029       4.7      26      38 ..      74      86 ..      62      92 .. 0.78
   2 ?    0.1   0.0      0.64     1e+03      26      34 ..     168     176 ..     157     203 .. 0.84
   3 ?    2.8   0.0     0.096   1.6e+02      82      96 .]     218     232 ..     209     232 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0029
                -SSTHHHH-SSTT CS
     DUF1924 26 elsCasCHgedpt 38
                ++sC +CHg++++
  KIR60809.1 74 DVSCVTCHGRNAQ 86
                68*******9875 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.64
                 -SSTHHHH- CS
     DUF1924  26 elsCasCHg 34 
                 +++C+ CH+
  KIR60809.1 168 RINCSQCHA 176
                 578****96 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.096
                 S---HHHHHHHHHHH CS
     DUF1924  82 rectaqekadvlayl 96 
                  + t+++kad++ay+
  KIR60809.1 218 NQITPEQKADIIAYI 232
                 5679**********7 PP

>> Cytochrome_C554  Cytochrome c554 and c-prime
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00069       1.1      61      84 .]      59      82 ..      47      82 .. 0.77
   2 ?    2.4   0.0      0.19   3.1e+02      78      83 ..     170     175 ..     153     189 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00069
                     STT---SSS--GGGBSS-HHHHH- CS
  Cytochrome_C554 61 kdkgfvlkektkllagVqCesCHg 84
                     ++  +   ++ k+l +V+C +CHg
       KIR60809.1 59 NPPLTGAAAEGKALFDVSCVTCHG 82
                     555556677788999********9 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.19
                      -HHHHH CS
  Cytochrome_C554  78 qCesCH 83 
                      +C +CH
       KIR60809.1 170 NCSQCH 175
                      444444 PP

>> Haem_bd  Haem-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0043       7.1      28      50 ..      63      85 ..      47      88 .. 0.78
   2 ?   -0.1   0.0      0.51   8.3e+02      94     131 ..     101     140 ..      97     142 .. 0.64
   3 ?    0.8   0.0      0.27   4.4e+02      37      47 ..     166     176 ..     156     178 .. 0.85
   4 ?   -0.2   0.0      0.55     9e+02     112     132 ..     213     233 ..     200     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0043
     Haem_bd 28 lkapkevkkiLeksCydCHsnet 50
                + a++e k++++ sC  CH +++
  KIR60809.1 63 TGAAAEGKALFDVSCVTCHGRNA 85
                45778889999********9887 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.51
     Haem_bd  94 aeieevieegemPlksY..lllhpeaklseeekqallewi 131
                 a++e ++++g+mP+++    ++ +   +++e+  +l +++
  KIR60809.1 101 ASVEFQVSSGRMPMARQeaQAMRKPPVFTDEQVRQLGQYV 140
                 5678899999999976411344555555666666665555 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.27
     Haem_bd  37 iLeksCydCHs 47 
                 +++ +C +CH+
  KIR60809.1 166 LFRINCSQCHA 176
                 56889*****7 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.55
     Haem_bd 112 llhpeaklseeekqallewik 132
                  ++ + +++ e+k+ ++++i+
  KIR60809.1 213 PVFGDNQITPEQKADIIAYIQ 233
                 56788999***********97 PP

>> MHC2-interact  CLIP, MHC2 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00034      0.55      20      53 ..      18      51 ..       4      64 .. 0.78
   2 ?   -3.1   0.0       4.6   7.5e+03      29      46 ..     257     276 ..     233     277 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00034
  MHC2-interact 20 rneersslkralkvaglsiLvalLiAGQavTaYf 53
                   ++++ +s  r+ + a++ +++al +AG a T++ 
     KIR60809.1 18 ERSAARSRGRRRLGAAVRLIAALTLAGGAYTVFA 51
                   34445567888999*****************985 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.6
  MHC2-interact  29 ralkvagls..iLvalLiAG 46 
                     a+ + g+   ++++l iAG
     KIR60809.1 257 LAIFLIGIValVFASLWIAG 276
                    44444444312567888888 PP

>> MCR  Magnetochrome domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.6      0.44   7.1e+02      20      24 ..      77      81 ..      75      82 .. 0.89
   2 ?    9.1   0.3   0.00057      0.93      19      29 ..     170     180 ..     168     181 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.44
                GGGT- CS
         MCR 20 CtkCH 24
                C +CH
  KIR60809.1 77 CVTCH 81
                ***** PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00057
                 -GGGT--BSST CS
         MCR  19 nCtkCHqIiga 29 
                 nC++CH+ +g+
  KIR60809.1 170 NCSQCHAFGGG 180
                 9******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2062.82
//
Query:       KIR60810.1  [L=362]
Description: (2Fe-2S)-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-09   35.8   0.1    9.6e-09   35.1   0.1    1.4  1  Rieske    Rieske [2Fe-2S] domain
  ------ inclusion threshold ------
      0.064   12.5   2.4        3.6    6.7   0.0    2.1  2  LtrA      Bacterial low temperature requirement A protein (Lt


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.1   1.1e-12   9.6e-09      33      89 .]     278     335 ..     245     335 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1.1e-12
                 TS-EEEEESC-TTTT-BCGG.SEEETT.EEE-TTT--EEE..TTSBEEE-TTHHHEEEET CS
      Rieske  33 dgevyAlsdvCtHrgaplse.gkidekgvleCpcHgwayd..adGkvikgPaprplatyp 89 
                  g++ A+s++CtH+g+p s  ++  + ++l CpcH++++    +++ + gPa r+l+++p
  KIR60810.1 278 WGNYAAFSKICTHAGCPASLyEQQ-T-NRLLCPCHQSQFLitDNARPVFGPASRRLPQLP 335
                 48999************7664444.4.49**********988888999999999999875 PP

>> LtrA  Bacterial low temperature requirement A protein (LtrA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   2.6    0.0038        34      19      48 ..      56      85 ..      53      89 .. 0.90
   2 ?    6.7   0.0    0.0004       3.6     260     335 ..     100     188 ..      88     192 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0038
        LtrA 19 qlthalahdltgegllrflllffavwwaWv 48
                +lt+ +a  + ++gl+++++l++ +ww W 
  KIR60810.1 56 RLTRTVASMFLLTGLAATAFLVVYIWWPWE 85
                6889999999999****************6 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0004
        LtrA 260 llivagiillavglelll..............ahpeelldlaaalllfggvalfllgllllkrvllgsvslsrlvllllllallalalvl 335
                 l +++g++ll++g   l               +h e+  ++a+   ++g  +l+l+  + +kr+ l  +sl++ ++++ ++a+++l+  l
  KIR60810.1 100 LGLTLGVALLGIGFGILTwgkkllpkevsiqdRH-ENDPNVAESRKITGETMLYLADEMGVKRRPLLGISLLAGLAPVGAVAAAPLVGGL 188
                 5578899999999998889999999999998543.446778889999***********************************99998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2624.43
//
Query:       KIR60811.1  [L=541]
Description: menaquinol-cytochrome C reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-60  203.0   5.5    3.1e-60  203.0   5.5    2.0  3  Cytochrom_B_N_2  Cytochrome b(N-terminal)/b6/petB
    6.1e-29  101.2  12.6    4.4e-27   95.1  12.6    2.2  1  Cytochrome_B     Cytochrome b/b6/petB
    3.2e-05   24.4   7.0    3.2e-05   24.4   7.0    4.1  2  DUF4405          Domain of unknown function (DUF4405)


Domain annotation for each model (and alignments):
>> Cytochrom_B_N_2  Cytochrome b(N-terminal)/b6/petB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.63   3.8e+03     100     114 ..      50      64 ..      23      88 .. 0.61
   2 !  203.0   5.5   5.2e-64   3.1e-60       2     169 .]     118     291 ..     117     291 .. 0.94
   3 ?   -3.3   0.0       1.3   7.8e+03      98     115 ..     340     356 ..     328     395 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.63
  Cytochrom_B_N_2 100 llpalllalivahll 114
                      l+++++l+l+++ l 
       KIR60811.1  50 LFSFVVLLLTGVFLT 64 
                      333333333333333 PP

  == domain 2  score: 203.0 bits;  conditional E-value: 5.2e-64
  Cytochrom_B_N_2   2 imiiliyvHmlrvfftGaYkkpRelnWiiGvllllltllegflGysLpddllsvtalrvgagiissvPvvgtwlvellfGgelpgeallsrlya 95 
                      +++++i+vHmlrvfftGa++kpRe+nWiiG ll+ +  l+gf+GysLpdd ls+t+lr+++gi+ s+Pv+g+w+ + +fGge+pge ++sr+++
       KIR60811.1 118 LFMAAIVVHMLRVFFTGAFRKPRETNWIIGSLLFWVGFLAGFTGYSLPDDGLSGTGLRIASGIMLSIPVIGSWVTSSIFGGEFPGEIIISRFFI 211
                      79******************************************************************************************** PP

  Cytochrom_B_N_2  96 lHilllpalllalivahlllv..ekkgqtpsr.rkeknvvgeplvpvnavkmlllflvl...vallialalinPvpllgp 169
                       H+ll+p+ll+ali ahl lv  +k++q p++ r+++nvvge+++p++a+k++ +f+v+   +al+ +l++inP++ +gp
       KIR60811.1 212 AHVLLIPGLLVALISAHLGLVfkQKHTQWPGPgRTNDNVVGERMFPRYALKQGGFFMVVfgvIALMGGLFQINPIWYFGP 291
                      ********************7779999999999*******************966665537566666*********9987 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.3
  Cytochrom_B_N_2  98 illlpalllalivahlll 115
                      + +lp++l+ l ++  ++
       KIR60811.1 340 V-VLPGVLVGLSTLYPFV 356
                      3.7777777776655443 PP

>> Cytochrome_B  Cytochrome b/b6/petB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1  12.6   7.4e-31   4.4e-27      14     186 ..      43     233 ..      33     236 .. 0.88

  Alignments for each domain:
  == domain 1  score: 95.1 bits;  conditional E-value: 7.4e-31
  Cytochrome_B  14 ynlGsllllvlvlqiltGvalafyytptvtl.................aflsvqyilrdvnfGwlirsvhangasllflllylhifrglllgglkkt 93 
                   + lG ++l+ +v+ +ltGv+l+f+y p +t+                 a++s   i  dv  G ++r++h ++a l++  +++h+ r++++g++ k+
    KIR60811.1  43 FLLGEIALFSFVVLLLTGVFLTFFYEPAMTEvvyngsyaplrgtpmsaAYASSLDISFDVRGGLIMRQMHHWSALLFMAAIVVHMLRVFFTGAFRKP 139
                   679**********************99876422222222222222222677777899**************************************** PP

  Cytochrome_B  94 relvWviGvillllvivtafiGyvLpwdqmsyWavtvitnllsaiPviGstlvellwgsvsvddatLtrffslh.fllPflllillllhllllh 186
                   re  W+iG +l+ +    +f+Gy+Lp d +s  ++++ ++++ +iPviGs++ + ++g+++ ++  + rff  h +l+P ll++l+  hl l+ 
    KIR60811.1 140 RETNWIIGSLLFWVGFLAGFTGYSLPDDGLSGTGLRIASGIMLSIPVIGSWVTSSIFGGEFPGEIIISRFFIAHvLLIPGLLVALISAHLGLVF 233
                   **************************************************************************7778*******999*97665 PP

>> DUF4405  Domain of unknown function (DUF4405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   7.0   5.4e-09   3.2e-05       6      62 ..      49     127 ..      45     130 .. 0.88
   2 ?   -7.1   9.7         3   1.8e+04      15      28 ..     177     190 ..     145     233 .. 0.63

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 5.4e-09
     DUF4405   6 lllsflvlaiSGillsfavlpsgrgaywa.....................flgl.skhqwrdiHeilgllflilvvlHl 62 
                 +l+sf+vl+++G+ l f + p +  +                         +++ +   +r++H++++llf++++v+H+
  KIR60811.1  49 ALFSFVVLLLTGVFLTFFYEPAMTEVVYNgsyaplrgtpmsaayassldiSFDVrGGLIMRQMHHWSALLFMAAIVVHM 127
                 699***************9998776655589***************7766445589999*******************7 PP

  == domain 2  score: -7.1 bits;  conditional E-value: 3
     DUF4405  15 iSGillsfavlpsg 28 
                  SGi+ls+ v+ s+
  KIR60811.1 177 ASGIMLSIPVIGSW 190
                 47777776655533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3597.14
//
Query:       KIR60812.1  [L=224]
Description: hypothetical protein TK50_23450 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-37  127.5  13.1    5.8e-37  127.0  12.1    1.7  2  DUF4142   Domain of unknown function (DUF4142)
    6.7e-07   29.6   5.5    1.8e-06   28.2   3.9    2.1  2  DUF305    Domain of unknown function (DUF305)
     0.0071   16.6   0.0     0.0091   16.2   0.0    1.2  1  CBM27     Carbohydrate binding module 27
  ------ inclusion threshold ------
      0.034   14.2   0.5      0.082   13.0   0.5    1.6  1  TPPK_C    Thiamine pyrophosphokinase C terminal
      0.044   13.8  13.7      0.045   13.7   0.3    2.6  2  Mucin     Mucin-like glycoprotein
        1.2    9.5  12.8         11    6.5  12.3    2.6  1  DUF732    Protein of unknown function (DUF732)


Domain annotation for each model (and alignments):
>> DUF4142  Domain of unknown function (DUF4142)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.0  12.1   1.9e-40   5.8e-37       2     138 ..      32     166 ..      31     167 .. 0.98
   2 ?    0.3   0.0      0.26   7.7e+02      49      65 ..     162     179 ..     161     189 .. 0.77

  Alignments for each domain:
  == domain 1  score: 127.0 bits;  conditional E-value: 1.9e-40
     DUF4142   2 adaeflakaaaaglfeveaaklAlqkaknpevkaFAqqmvadhtkaneeLkalaskkgvtlpdsteldaeaqakldkLkalsgaaFDkaYleaqvaahq 100
                 +d ++l+++++ +l+e+e+++lA+qk++n++vk+ ++q v+dht++++ ++++a++++v+lp   +++a++q+ ++kLk+lsga+FDka+++a++a+h 
  KIR60812.1  32 QDSQYLQALHQVNLAEIESGNLAQQKGQNQQVKDLGAQFVTDHTQLDQTVQDTAQQLNVKLP--GAPTADQQKVINKLKKLSGAEFDKAWVTAELAGHV 128
                 799***********************************************************..79********************************* PP

     DUF4142 101 kavellekaaasgkdaelkafaektlptlqaHleeaea 138
                 +a+++ ++++++g+++++ ++a+++lp+lqaH++++ a
  KIR60812.1 129 QAIQATQTEISQGTEQSVVQLAQNALPVLQAHYDALVA 166
                 *********************************98765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.26
     DUF4142  49 eeLkalaskkgvtlpd.s 65 
                 ++L ala+++gv +p+ s
  KIR60812.1 162 DALVALAQTLGVPVPQtS 179
                 57899**********731 PP

>> DUF305  Domain of unknown function (DUF305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.5     0.016        47      90     140 ..      23      73 ..      16      77 .. 0.70
   2 !   28.2   3.9   5.9e-10   1.8e-06      39     136 ..      56     152 ..      33     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.016
                 HHHHS-HHHHHHHHHHHHHHHHHHHHHHHGGGG-----HHHHHHHHHHHHH CS
      DUF305  90 alraasgadfdrlFlelMirhHqgavemaeaalekgedpevrelaeaiiea 140
                 a +aa+    d ++l+++ +   + +e  + a +kg++++v++l ++ +++
  KIR60812.1  23 AAQAAQPSTQDSQYLQALHQVNLAEIESGNLAQQKGQNQQVKDLGAQFVTD 73 
                 455666677777777777777777777777777888888888877766654 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 5.9e-10
                 HHHHHHHHHHHHHHHHHHT---........-----HHHHHHTT---HHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHGGGG-----HHHHHHHHH CS
      DUF305  39 aaaQqaeiaemqgwleawgqpassagegeaaeaseaeeaampgmaseaelaalraasgadfdrlFlelMirhHqgavemaeaalekgedpevrelaea 136
                 ++ Q+++++ + +   +  ++  ++  +++a++ + + ++ p+  +++ +++l+++sga+fd++++++ ++ H +a++  ++++++g+++ v +la++
  KIR60812.1  56 QKGQNQQVKDLGAQFVTDHTQLDQTV-QDTAQQLNVKLPGAPTADQQKVINKLKKLSGAEFDKAWVTAELAGHVQAIQATQTEISQGTEQSVVQLAQN 152
                 35667777777654444444443333.46666777777888888889999**********************************************97 PP

>> CBM27  Carbohydrate binding module 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.1e-06    0.0091      28      74 ..      68     114 ..      43     145 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.1e-06
       CBM27  28 aefkipdiewngevktralrvnvvlpgkadweevkvvrkidelsvte 74 
                 a+f +   + + +v++ a ++nv+lpg    ++ kv++k+++ls +e
  KIR60812.1  68 AQFVTDHTQLDQTVQDTAQQLNVKLPGAPTADQQKVINKLKKLSGAE 114
                 88999999999*******************************99765 PP

>> TPPK_C  Thiamine pyrophosphokinase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.5   2.7e-05     0.082      14      42 ..       8      38 ..       5      42 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
      TPPK_C 14 gallllvlAaLvAvavallvspagq..sfld 42
                g l+ lv+A+L+++a+a ++ p++q  ++l+
  KIR60812.1  8 GLLAALVVAGLAPAAAAQAAQPSTQdsQYLQ 38
                5689******************888556665 PP

>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.3   1.5e-05     0.045      78     140 ..      72     134 ..       9     139 .. 0.86
   2 ?    3.4   7.7     0.024        72      69     111 ..     179     220 ..     150     223 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
       Mucin  78 ttttttttttateaPsdavttaeaPtttttrapsrlrevdGslsssaWvcaPLllavsalayt 140
                 t  t+   t    a + +v    aPt+++ +   +l+++ G+    aWv+a L   v a+ +t
  KIR60812.1  72 TDHTQLDQTVQDTAQQLNVKLPGAPTADQQKVINKLKKLSGAEFDKAWVTAELAGHVQAIQAT 134
                 4445556677777888899999***********************************999988 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.024
       Mucin  69 ttkttkattttttttttttateaPsdavttaeaPtttttraps 111
                 ++  t ++ +tttt     ++eaP+    t e+Pt+++t +p+
  KIR60812.1 179 SASGTPSPGATTTTPAPGGSSEAPA-PGGTFESPTPENTETPA 220
                 3345666677777777778889999.66788999998888774 PP

>> DUF732  Protein of unknown function (DUF732)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  12.3    0.0037        11       2      38 ..      10      50 ..       9     155 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0037
      DUF732  2 aaallaaalllaapAaAd...saddaFlaalnqagi.aygs 38
                +aal++a l+ aa A+A    ++d+++l+al+q    +++s
  KIR60812.1 10 LAALVVAGLAPAAAAQAAqpsTQDSQYLQALHQVNLaEIES 50
                6889999999999999966779**********988754443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1166  (0.0650343); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1696.45
//
Query:       KIR60813.1  [L=95]
Description: AsnC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-16   58.9   0.1    4.3e-16   58.6   0.1    1.1  1  AsnC_trans_reg   Lrp/AsnC ligand binding domain
    5.2e-05   23.2   1.5    6.7e-05   22.9   1.5    1.1  1  NapD             NapD protein
  ------ inclusion threshold ------
      0.099   12.8   0.0       0.12   12.5   0.0    1.3  1  AsnC_trans_reg2  AsnC-like ligand binding domain


Domain annotation for each model (and alignments):
>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.1   7.2e-20   4.3e-16       1      74 [.       6      76 ..       6      77 .. 0.94

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 7.2e-20
                    EEEEE-GGGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEE CS
  AsnC_trans_reg  1 vlvslepghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivle 74
                    vl+ +  ++   + e++e la+lp V e+y+v+G  d++++v+vr  +++ +++   ++++pgv +te++i+++
      KIR60813.1  6 VLIDCATDS---IPEVAENLAALPGVSEVYSVAGHVDLIAIVRVREFDQIAQVIAGSISKVPGVINTESHIAFR 76
                    677788666...***********************************************************986 PP

>> NapD  NapD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   1.5   1.1e-08   6.7e-05       6      68 ..       6      70 ..       2      74 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.1e-08
        NapD  6 lvVqarperlaavkaalaalpgv.EvhasdeegklVvviEaesedeladtiea.iealpgVlsas 68
                +++ ++ +++++v+++laalpgv Ev+ + +   l+ ++   + d++a+ i+  i+++pgV++++
  KIR60813.1  6 VLIDCATDSIPEVAENLAALPGVsEVYSVAGHVDLIAIVRVREFDQIAQVIAGsISKVPGVINTE 70
                6899******************9899999999*****************99866*********96 PP

>> AsnC_trans_reg2  AsnC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     2e-05      0.12       8      61 ..       4      57 ..       1      78 [. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2e-05
  AsnC_trans_reg2  8 alvawkvpeerveevaevvaelpevtHcYeRewpynlyfmvharseeeveevla 61
                     a v +++  + + evae +a+lp+v+ +Y    +  l ++v +r+ +++ +v+a
       KIR60813.1  4 AIVLIDCATDSIPEVAENLAALPGVSEVYSVAGHVDLIAIVRVREFDQIAQVIA 57
                     778999999********************9999999999999999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 654.40
//
Query:       KIR60814.1  [L=177]
Description: NUDIX hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-16   60.2   0.1    2.7e-16   59.8   0.1    1.1  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.1   1.5e-20   2.7e-16      12     116 ..      50     150 ..      35     161 .. 0.74

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 1.5e-20
                 ETTSEEEEEEESSSSTTTEESSEEECBTTSHHHHHHHHHHHHHHSE..EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.EEECSGCSST.STTTEEE CS
       NUDIX  12 nekgevLlvrrskkpfpgWelPgGkvepgEtpeeAArREleEEtGl..eaellellgrlhylapydgpygdeheilyvfl.eevegelepn.denevse 106
                 ++ g++Ll+r+   p ++W+lP+G ++ gE+p   A+REl+EE G+  +++ l+        a ++++   + ++++vf+ e + ++ +++ d +ev e
  KIR60814.1  50 DGAGRLLLLRQP--PGHSWTLPAGLLQRGEDPVVGAARELFEESGVrlSPDRLRP-------AVPNAVVHAKGWVDVVFEaEVPASTTKLTvDGAEVFE 139
                 23366****999..8888***************************7114433333.......445666666*********8666666666689****** PP

                 EEEEEHHHH.H CS
       NUDIX 107 vrwvpleel.l 116
                 + w+pl++l  
  KIR60814.1 140 AAWHPLDDLpR 150
                 *********32 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 1189.57
//
Query:       KIR60815.1  [L=595]
Description: GTP pyrophosphokinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-41  142.2   1.2      2e-41  141.3   1.2    1.5  1  HD_4       HD domain
    3.5e-17   62.8   0.0    6.8e-17   61.8   0.0    1.5  1  RelA_SpoT  Region found in RelA / SpoT proteins
    3.1e-15   56.0   0.0    7.1e-15   54.8   0.0    1.6  1  TGS        TGS domain
    2.7e-14   53.5   1.8      5e-12   46.1   0.7    3.3  3  HD         HD domain
     0.0053   17.4   0.1      0.019   15.6   0.1    2.0  1  ThiS       ThiS family
  ------ inclusion threshold ------
      0.035   14.7   0.0       0.13   12.9   0.0    2.0  1  UreF       UreF
        0.2   11.8   0.0        1.6    8.9   0.0    2.3  2  HTH_AraC   Bacterial regulatory helix-turn-helix proteins, Ar
       0.34   11.1   3.2       0.27   11.4   0.6    2.3  2  DprA_WH    DprA winged helix domain


Domain annotation for each model (and alignments):
>> HD_4  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.3   1.2     9e-45     2e-41       1     155 [.      64     211 ..      64     212 .. 0.97

  Alignments for each domain:
  == domain 1  score: 141.3 bits;  conditional E-value: 9e-45
        HD_4   1 AlelaaelhagqrkltgepllahalevAailaelgldaetviAalLhdvveda.lsleeirerfGeevarLvegvsklkrlqkvaaadeaeekaeqven 98 
                 A+  a+++h+gq +++gep+++h+l+vA+i aelg+da t++AalLhd+ved+  +l++++e+fG eva+Lv+gv+k ++   +        ka+++e+
  KIR60815.1  64 AYTIAENMHRGQFRKSGEPYITHPLAVAQICAELGMDATTLVAALLHDTVEDTrYTLQALAEDFGGEVAHLVDGVTKFDKAFYG--------KAAEAET 154
                 7789************************************************97777************************999........9****** PP

        HD_4  99 lRkmLlAmveDirvvliklAdrlqtlrslaaakeekrrdvaretldiyaplAnrlGi 155
                 +Rkm++A  +D+rv++iklAdrl+++r+l   + + r+++ar+tl++  pl  rlGi
  KIR60815.1 155 TRKMIVAAGKDVRVLIIKLADRLHNMRTLGVRSAASRERIARKTLEVLVPLCDRLGI 211
                 *****************************9999999********************8 PP

>> RelA_SpoT  Region found in RelA / SpoT proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0     3e-20   6.8e-17      35     113 ..     298     376 ..     271     379 .. 0.89

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 3e-20
                 EEE.SSHHHHHHHHHHHHT-SSSEEEEEEETSTSHCTTCCSEEEEEEEETTEEEEEEEEEEEEEHHHHHHHH..HHHHHHHH CS
   RelA_SpoT  35 viv.efkddvyevlelikklwdvkpkrfkdyiaepkengYrslHtvvssekgeekvlvEiQiRtiamdawae..iehhlrYk 113
                 ++v    +d+y++l++++ lw+++p+rfkd+ia+pk+n YrslHt v    g+++ +vE+ iRt +m++ ae  i++++r++
  KIR60815.1 298 IVVdGPATDCYAALGAVHGLWRPVPGRFKDFIASPKNNLYRSLHTSV---CGPKDRTVEVLIRTEEMHRAAEygIAADFRFP 376
                 44424589***************************************...************************99999886 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   3.2e-18   7.1e-15       7      60 .]     425     478 ..     420     478 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 3.2e-18
                 TSSEEEEETTB-HHHHHHHHSTTHHHHEEEEEECSEEEETTSBB-SSEEEEEEE CS
         TGS   7 dGkvpdlprgatveDfAykIhrslakkfiyAlVnGqrvgldhvLedgdvveIvt 60 
                 +G+++ lp gat++D+Ay ++ + ++++++A++nG++ +l+ +Le+gdvveI+t
  KIR60815.1 425 EGRQVVLPAGATPVDVAYELGPDRGDRCLAARINGRLAPLSSELEEGDVVEIFT 478
                 599999**********************************************97 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.23   5.1e+02      77     107 ..      35      59 ..      23      74 .. 0.67
   2 !   46.1   0.7   2.2e-15     5e-12       1     122 []      83     180 ..      83     180 .. 0.84
   3 ?    3.1   0.0     0.046     1e+02      44     118 ..     507     576 ..     500     593 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.23
                 H...HHHHHHHHHTTCCHHHHHHHHHHHHCCTSC CS
          HD  77 d...ledvaklirehheswegkkrprglaerqls 107
                 +   ++ v +lir h++ ++g+         + s
  KIR60815.1  35 PtgeTDPVTHLIRTHRGIHPGT---------EAS 59 
                 356788999**********988.........444 PP

  == domain 2  score: 46.1 bits;  conditional E-value: 2.2e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHH.HHHCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH CS
          HD   1 rleHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekk.eeefekflaHekvgaeilrevekrlgldledvaklirehheswegkkrp 98 
                 +++H+l+Va+++++l++d         +l+aaLlHD+++++  ++ +++  e+f++++aH ++g+++  +++           k++++ + +++     
  KIR60815.1  83 YITHPLAVAQICAELGMDAT-------TLVAALLHDTVEDT--RYTLQAlAEDFGGEVAHLVDGVTKFDKAF---------YGKAAEAETTRKM----- 158
                 689****************9.......**************..4556664555************6666664.........5667777777776..... PP

                 HHHHCCTSCHHHHHHHHHHHHHHH CS
          HD  99 rglaerqlslearivklaDrlaam 122
                     +  ++ +++i+klaDrl++m
  KIR60815.1 159 --IVAAGKDVRVLIIKLADRLHNM 180
                 ..467899999***********98 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.046
                 S..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH..H.HHHCCTSCHHHHHHHHHHH CS
          HD  44 dafekkeeefekflaHekvgaeilrevekrlgldledvaklirehheswegkkrp..r.glaerqlslearivklaDr 118
                 +a+    + ++ f +H++ g +i+ +v + +     + + l++++h++   +  p  r +++   ++le ++v++ Dr
  KIR60815.1 507 HAQM---QINRWFAEHTEPGISIADKVRLGR-----ATIGLALRKHDRGLANDLPllRlSEELGYPDLETLLVAVFDR 576
                 4333...23568999************8888.....788888888888887877766356666666666666666665 PP

>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   8.4e-06     0.019      13      72 ..     426     478 ..     416     479 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8.4e-06
                 CEEEEESSTSBHHHHHHHHHHHTCHHGTTTTEEEEETTEEEGCCTTTSB--TTCEEEEEE CS
        ThiS  13 eeelelaegstvaelleaLgerypelalerrvavavNgeivprlwldtelkdgDevailp 72 
                  ++++l+ g+t  ++  +Lg +       r +a+ +Ng+++p    + el +gD+v+i++
  KIR60815.1 426 GRQVVLPAGATPVDVAYELGPDR----GDRCLAARINGRLAPL---SSELEEGDVVEIFT 478
                 57788888999999999998777....46999999********...************97 PP

>> UreF  UreF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.8e-05      0.13      76     108 ..      67     115 ..      24     117 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.8e-05
                 -.................-HHHHHHHHHHHHT--HHHHHHHHHHHHHHH CS
        UreF  76 l.............t...hypvafglaaaalgipleeallaylfswaen 108
                 +             +   ++p+a+++++a lg+++ ++++a+l+ ++e+
  KIR60815.1  67 IaenmhrgqfrksgEpyiTHPLAVAQICAELGMDATTLVAALLHDTVED 115
                 0333355555444404557*************************99985 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00071       1.6       6      25 ..      85     104 ..      84     108 .. 0.90
   2 ?   -0.4   0.0      0.62   1.4e+03       7      25 ..     550     569 ..     548     569 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00071
                 SCT--HHHHHHHTTSSHHHH CS
    HTH_AraC   6 stnltiediAdelgfSrsyF 25 
                 +++l +++i++elg++ +++
  KIR60815.1  85 THPLAVAQICAELGMDATTL 104
                 899*************9998 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.62
                 CT--HHHHHHHTTS.SHHHH CS
    HTH_AraC   7 tnltiediAdelgf.SrsyF 25 
                 ++l + ++++elg+ +  ++
  KIR60815.1 550 NDLPLLRLSEELGYpDLETL 569
                 678999********998775 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       4.3   9.6e+03       5      22 ..      16      33 ..      14      40 .. 0.83
   2 ?   11.4   0.6   0.00012      0.27      24      48 ..      86     110 ..      85     110 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.3
     DprA_WH  5 paepplddlerrvLaaLg 22
                p++p++ +l+rr+ ++L+
  KIR60815.1 16 PTQPGDLPLARRLRSLLS 33
                678888899999999987 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00012
     DprA_WH  24 ePvhvDqLvrrtglpaaevsaaLle 48 
                  P++v q+++++g++a ++ aaLl+
  KIR60815.1  86 HPLAVAQICAELGMDATTLVAALLH 110
                 699********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3934.14
//
Query:       KIR60816.1  [L=505]
Description: hypothetical protein TK50_23480 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-21   77.2   0.0      1e-20   74.4   0.0    2.2  2  NYN_YacP     YacP-like NYN domain
     0.0016   18.4  18.9     0.0043   17.0  18.9    1.8  1  Trypan_PARP  Procyclic acidic repetitive protein (PARP)
  ------ inclusion threshold ------
      0.057   13.8   7.0       0.11   12.9   7.0    1.5  1  CENP-H       Centromere protein H (CENP-H)
       0.33   10.8   2.3       0.67    9.8   2.3    1.5  1  betaPIX_CC   betaPIX coiled coil
        2.4    7.0   7.8        3.8    6.3   7.8    1.3  1  Spc7         Spc7 kinetochore protein
        2.4    7.3   6.4        1.2    8.2   4.2    1.5  2  DLP_helical  Dynamin-like helical domain
        3.6    8.0  11.0        0.4   11.1   5.2    2.0  2  DUF4200      Domain of unknown function (DUF4200)
          4    7.0  24.1      0.026   14.1  12.7    2.2  2  DUF2968      Protein of unknown function (DUF2968)


Domain annotation for each model (and alignments):
>> NYN_YacP  YacP-like NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.2      0.57   1.3e+03     115     156 ..     218     259 ..     191     293 .. 0.69
   2 !   74.4   0.0   4.5e-24     1e-20       1     128 [.     385     503 ..     385     505 .] 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.57
                 EEEE-HHHHHHHHHHHHHHHHHHHHHHHH.HSGGGGHHHHHH CS
    NYN_YacP 115 Alrlsarelveevkeaekeikkkaeeekeekkkklekklske 156
                 ++r+ a +l +e+ ++++e+ +  ee+++ +++ +e +  ++
  KIR60816.1 218 VARVEADKLRDELARVRDELGQLREENRQLARTLREAQARER 259
                 456666777777777777776555555443444444433333 PP

  == domain 2  score: 74.4 bits;  conditional E-value: 4.5e-24
                 EEEEHHHHHHHSHHHHT--.HHHHHHHHHHHHHHHHHHHHHH--EEEEEE-TTTS---TT----T.T-EEEE--TT--HHHHHHHHHHHC--TT--EEE CS
    NYN_YacP   1 llvDGYNvigawpelkklkekesleaaRekLieelanyqsfkgyevivVFDAqkvkgseeeeekaeglevvytkegetADsvIeklvaelrkekeevvV 99 
                 l+vDGYNv +        + + sle++R++Li+ l   ++ +g ev+vVFD+++  +        +g++v+++++getAD++I +lv+      + vvV
  KIR60816.1 385 LVVDGYNVTKR------GFGEMSLEQQRKRLITGLGGIAAQTGDEVTVVFDGAERMHGLPPS--PRGVRVLFSRKGETADELIRRLVRAEPP-GRPVVV 474
                 79******766......555678*****************************9888766666..457*********************9997.9***** PP

                 E---CSSCTGGGGCTEEEE-HHHHHHHHH CS
    NYN_YacP 100 vTSDraeqlvvfgkGAlrlsarelveevk 128
                 v+SDr++   v+++GA+ l a  l++++ 
  KIR60816.1 475 VSSDREVADGVRRHGAYPLGADSLLRRLA 503
                 ***********************998876 PP

>> Trypan_PARP  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0  18.9   1.9e-06    0.0043      53     109 ..      28      79 ..       4      95 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.9e-06
  Trypan_PARP  53 dtngtdpepepepepepepe.pepepepetepeeepepepepepepepepepepepep 109
                   t g+ + pe+epepe ep   ep+pep     e    e++pep pe+epep   pep
   KIR60816.1  28 PTAGAGTVPEQEPEPESEPRlSEPGPEP-----ELVRSESGPEPGPESEPEPT-LPEP 79 
                  4555555555555555555422344444.....23456777777777777763.3444 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   7.0   4.9e-05      0.11      21      81 ..     222     289 ..     196     304 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.9e-05
      CENP-H  21 elrelqeeltevekenlrlkrknrelaael.lelakekesek......eklkeelekleaelkksrqr 81 
                 e  +l++el++v+ e  +l+++nr+la++l + +a+e ++ +       +++++  ++ ael+++r+r
  KIR60816.1 222 EADKLRDELARVRDELGQLREENRQLARTLrEAQARERRAAEllaterGRATRAATEADAELRRARAR 289
                 67899*************************55666666666699886633555555555555555554 PP

>> betaPIX_CC  betaPIX coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.3    0.0003      0.67      28      66 ..     221     260 ..     193     270 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0003
  betaPIX_CC  28 leekslVDtVYaLkdevqelkqenkklkksleeEq.kaRk 66 
                 +e   l D    ++de+ +l++en++l ++l e q + R+
  KIR60816.1 221 VEADKLRDELARVRDELGQLREENRQLARTLREAQaRERR 260
                 5555677888899******************765524444 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.8    0.0017       3.8     142     219 ..     224     301 ..     190     315 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0017
        Spc7 142 egleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekk 219
                 ++l+++l+ ++++  +L +++ +l + l e ++++ +  e l++++ +a+  ++   +eL+ +r +lae++a     +
  KIR60816.1 224 DKLRDELARVRDELGQLREENRQLARTLREAQARERRAAELLATERGRATRAATEADAELRRARARLAEAEAAAGVAR 301
                 456777777777777777777777777777777777777777777777777777777777777777777776655544 PP

>> DLP_helical  Dynamin-like helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.2   0.00055       1.2      49     120 ..     181     253 ..     178     264 .. 0.58
   2 ?   -1.3   0.1      0.44   9.8e+02      78     114 ..     253     293 ..     246     307 .. 0.44

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00055
  DLP_helical  49 kikknggelalieetkksvirdvlerqlpeaeerlee...lekevekleesakriekelaelkkeieearielre 120
                  +i+++g++  + +e+ k+v+ +++ +  + a +++++   +  e++kl+++++r ++el +l++e  + +++lre
   KIR60816.1 181 LIDASGAA--VRAEADKAVVDELVREAEQRATRAEHDravARVEADKLRDELARVRDELGQLREENRQLARTLRE 253
                  56666665..77888877777776554444433322211144566666666666666666666666666666655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.44
  DLP_helical  78 eaeerleelekevekle....esakriekelaelkkeieea 114
                  ea++r++++ + ++  +     +a +  +el++++ ++ ea
   KIR60816.1 253 EAQARERRAAELLATERgratRAATEADAELRRARARLAEA 293
                  44444444443333333000033333334444444444444 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   5.2   0.00018       0.4      44     107 ..     192     255 ..     187     259 .. 0.93
   2 ?   -0.0   0.9      0.49   1.1e+03      45      72 ..     267     294 ..     251     309 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00018
     DUF4200  44 eedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekleeyk 107
                 e d + +d+ ++e +++ +ra+   +  r + ++   e+++ ++e+ +l++e+++l+++l+e +
  KIR60816.1 192 EADKAVVDELVREAEQRATRAEHDRAVARVEADKLRDELARVRDELGQLREENRQLARTLREAQ 255
                 56677799***************************************************99876 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.49
     DUF4200  45 edllkfdkflkendakraralkkaeeer 72 
                  +  + ++   e da+ +ra+ + +e +
  KIR60816.1 267 TERGRATRAATEADAELRRARARLAEAE 294
                 3333444445555555555555544444 PP

>> DUF2968  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1  12.7   1.2e-05     0.026     101     170 ..     188     257 ..     176     267 .. 0.93
   2 ?   -2.6   4.6       1.7   3.7e+03      89     122 ..     273     306 ..     258     315 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
     DUF2968 101 rikleaqkaqlerqiaasearaerLqadlavarqQeqavaerQkqarkeaaaLeaqreaaqaqlralqrq 170
                 +++ ea+ka +++++ ++e+ra+r + d avar    ++ ++ + +r+e  +L+++++++ + lr++q +
  KIR60816.1 188 AVRAEADKAVVDELVREAEQRATRAEHDRAVARVEADKLRDELARVRDELGQLREENRQLARTLREAQAR 257
                 6899**************************************************************9975 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.7
     DUF2968  89 rqtaelaeveirrikleaqkaqlerqiaaseara 122
                  ++a+ a+ e+rr++    +a +   +a+++a+ 
  KIR60816.1 273 TRAATEADAELRRARARLAEAEAAAGVARASAKE 306
                 6778889999999998766665555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1356  (0.0756317); expected 358.6 (0.02)
Passed bias filter:                      624  (0.0348039); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 3548.76
//
Query:       KIR60817.1  [L=419]
Description: peptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-26   93.3   0.0    2.5e-26   92.7   0.0    1.3  1  Peptidase_M48    Peptidase family M48
    3.5e-15   56.4   0.1    6.6e-15   55.5   0.1    1.5  1  Peptidase_M48_N  CAAX prenyl protease N-terminal, five membra
  ------ inclusion threshold ------
      0.018   14.3   0.0      0.054   12.7   0.0    1.7  2  Peptidase_M56    BlaR1 peptidase M56
      0.031   13.9   0.0      0.047   13.3   0.0    1.2  1  DUF2268          Predicted Zn-dependent protease (DUF2268)
      0.035   13.7   0.7      0.035   13.7   0.7    3.5  3  Wzy_C            O-Antigen ligase


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.0   6.9e-30   2.5e-26       2     194 ..     208     412 ..     207     414 .. 0.87

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 6.9e-30
                    --SSHHHHHHHHHHHHTT-..-EEEEEEE-GGGT....-EEEEESSS-EEEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHH.HHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
  Peptidase_M48   2 lreaelkevveelakeaglpkpltkvyvvnspkr....NAFalgggknkrivltdgLlkqllseeelaaVlGHElGHikhrhsvvs.livsllasi 92 
                     +++ l++++  la++ g+  p  +v+v+++++r    NA+++g g ++r+v++d+Ll +  +++e+  V +HElGH+k r++ +  l  +l a +
     KIR60817.1 208 MEQGPLRTELTALAARDGV--PVRDVLVADASRRtravNAYVSGLGPTRRVVVYDTLL-REATPAEVTSVVAHELGHAKDRDVWTGtLTGALGAAL 300
                    578889999**********..99********99999**********999*********.************************9994555555555 PP

                    HHHHHHHHHTT-SHHHHHTT--S---HHHHHHHHHHTT..........HHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48  93 llllglallisraeedaagafldalavliglliillfl..........alSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrsel 178
                       ++++l  +   ++ ag    a + ++ ll +l+ +           +SR+ E +AD++++ l+ ++++      +la  ++ +++    +  +
     KIR60817.1 301 GVVVLYLLGSAGPLLRLAGVDSIAEPRAFPLLLALVTVaglvtapaqaLVSRRVEARADAHALALTGDPATFEAMQRRLAGVNLADPDPPRWEYLY 396
                    555555555556677888888889999999999998889****************************88888777788999999988888777799 PP

                    S-SS--HHHHHHHHHH CS
                    xxxxxxxxxxxxxxxx RF
  Peptidase_M48 179 lstHPplleRiqalke 194
                     ++HP+++eR++a+++
     KIR60817.1 397 SASHPSTVERMAAARA 412
                    9***********9986 PP

>> Peptidase_M48_N  CAAX prenyl protease N-terminal, five membrane helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.1   1.9e-18   6.6e-15      53     182 .]      76     204 ..      48     204 .. 0.87

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 1.9e-18
  Peptidase_M48_N  53 lllgllpflwklsgkllgldaeseilqslvfllllslistlislPfslYstFviEekhGfnkqtlklfikdklkslllalviglpllaallwii 146
                      l +gl p+  +l++ +++    + i+q+++  l+++l+  l+ lPf+ +++ ++  ++G  +q ++ + +d+lks+++++vig++ l+++  ++
       KIR60817.1  76 LAVGLTPLGGRLVELVARPFGGHWIAQAVLGGLAVLLVADLLTLPFAAWRQTILT-RYGLSTQGWAGWAADLLKSYAVSAVIGALALLGFYTVV 168
                      4444444444444443334667889999999999*****************9997.************************************** PP

  Peptidase_M48_N 147 ewggeyfylylwlfllvfslllmtiyPtlIaPLFnK 182
                      + + ++++    +  + + +ll +++P+l+ P Fn+
       KIR60817.1 169 RLAPRWWWALGAAGAAGLVVLLSFVLPVLVEPVFNR 204
                      **********************************96 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.4      0.87   3.1e+03       8      57 ..     152     199 ..     147     220 .. 0.55
   2 ?   12.7   0.0   1.5e-05     0.054     180     218 ..     255     293 ..     248     300 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.87
  Peptidase_M56   8 iaaaiavllvlllrrilrrllsaiaaYalWlivllallipfipesavslp 57 
                    ++a+i+ l+ l +  ++r   ++++ +al +     l++ +++  +v + 
     KIR60817.1 152 VSAVIGALALLGFYTVVRL--APRWWWALGAAGAAGLVVLLSFVLPVLVE 199
                    5556666666655555543..55565655555555555555444444433 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.5e-05
  Peptidase_M56 180 rIvlPadflkklsdeeleyillHElaHlkrkDllvnllv 218
                    r+v+ + +l++ + +e + +++HEl H+k +D++   l 
     KIR60817.1 255 RVVVYDTLLREATPAEVTSVVAHELGHAKDRDVWTGTLT 293
                    67777889999***********************98886 PP

>> DUF2268  Predicted Zn-dependent protease (DUF2268)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.3e-05     0.047      16      76 ..     221     282 ..     212     289 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
     DUF2268  16 lkkpdvdvfilpvneenrklieekgykgglaipdkiflfl.leneyskerlaallaHEyhHv 76 
                   +  v+v  ++v +++r++++ ++y++gl+   +++++  l +e +  ++ +++aHE+ H+
  KIR60817.1 221 AARDGVPVRDVLVADASRRTRAVNAYVSGLGPTRRVVVYDtLLREATPAEVTSVVAHELGHA 282
                 55667888867777778899999*************999889999999***********996 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   5.2       0.2   7.1e+02      16      39 ..      62      91 ..       7     133 .. 0.58
   2 ?   13.7   0.7   9.7e-06     0.035      12      58 ..     148     194 ..     140     252 .. 0.77
   3 ?    2.3   0.0     0.032   1.2e+02      12      61 ..     292     352 ..     285     400 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.2
       Wzy_C 16 Rsgiigllvalivlliifykrri......p 39
                 +g+ +l+v+l+v+l++++ ++       +
  KIR60817.1 62 PGGWAALAVGLLVALAVGLTPLGgrlvelV 91
                355555555555555555555555555550 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 9.7e-06
       Wzy_C  12 lstsRsgiigllvalivlliifykrripfllllgilvgvilliilfv 58 
                  s++ s++ig+l++l+++ ++++ +r+ ++l +++++g+++l+ +++
  KIR60817.1 148 KSYAVSAVIGALALLGFYTVVRLAPRWWWALGAAGAAGLVVLLSFVL 194
                 58999**********************44444445555555555443 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.032
       Wzy_C  12 lstsRsgiigllvalivlliifykrri..............pfllllgilvgvilliilfvlst 61 
                 l+++ ++ +g++v+ ++       +++              p ll l+ ++g++++ + +++s+
  KIR60817.1 292 LTGALGAALGVVVLYLL---GSAGPLLrlagvdsiaeprafPLLLALVTVAGLVTAPAQALVSR 352
                 33333333333333333...33333334558888887655555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3018.23
//
Query:       KIR60818.1  [L=374]
Description: GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-41  139.6   0.0      1e-40  139.1   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    2.6e-33  115.3   0.1    4.3e-33  114.6   0.1    1.4  1  Glyco_trans_1_4  Glycosyl transferases group 1
    1.7e-12   47.5   0.0    4.2e-12   46.3   0.0    1.6  1  Glyco_trans_1_2  Glycosyl transferases group 1
      1e-07   32.1   4.9    2.5e-07   30.9   4.9    1.8  1  Glyco_transf_4   Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.1   0.0   2.3e-44     1e-40      13     172 .]     189     354 ..     180     354 .. 0.97

  Alignments for each domain:
  == domain 1  score: 139.1 bits;  conditional E-value: 2.3e-44
                      TT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESS.... CS
  Glycos_transf_1  13 ekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsis.... 102
                       +++++++v+rl+++Kg+d li+a+++++++  p++ l+++G+g+++  l+kla + +++ +v f+g v+  +l++ + + d++++p+++    
       KIR60818.1 189 ADRPVVVCVSRLVPRKGQDMLIRALPEIRRR-VPDAALLVVGGGPYRGDLEKLARQTGVERDVVFTGSVPAAELPAHYAAGDVYAMPCRTrnrg 281
                      5899************************998.************************************************************** PP

                      ...BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHHHH CS
  Glycos_transf_1 103 ...EgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenarkr 172
                         Eg+Giv lEA a glpv+a ++gg+++ v++getG++v+  ++++la++++ ll d++l+++lg ++r +
       KIR60818.1 282 ldvEGLGIVYLEASATGLPVVAGDSGGAPDAVREGETGYVVPGRDVAQLADRVATLLADRDLARQLGAAGRAW 354
                      *********************************************************************9976 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.1   9.6e-37   4.3e-33       1     134 []     191     340 ..     191     340 .. 0.92

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 9.6e-37
                      SEEEEEES---GG.GTHHHHHHHHHHHH.H..HEEEEEES---...HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--....... CS
  Glyco_trans_1_4   1 rpvilfvGrleenvkgvdllleavpllrkk..dvrlvivGdgp.rpeeleelaa..gleerveftGfv..edlaellaaadvfvaPs....... 80 
                      rpv+++v+rl+ ++kg+d+l++a+p++r++  d+ l++vG+gp r  +le+la+  g+e +v+ftG v  ++l++++aa dv+ +P        
       KIR60818.1 191 RPVVVCVSRLV-PRKGQDMLIRALPEIRRRvpDAALLVVGGGPyR-GDLEKLARqtGVERDVVFTGSVpaAELPAHYAAGDVYAMPCrtrnrgl 282
                      699*******6.56**************88855**********66.5999888668**999*******9888***************9988777 PP

                      ..---SHHHHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  81 ..egfglkllEamaaglpvVatdvggiaevv..gengllvppgdpealaeailrLled 134
                        eg+g++ lEa a glpvVa d gg++++v  ge+g++vp +d+++la+++++Ll+d
       KIR60818.1 283 dvEGLGIVYLEASATGLPVVAGDSGGAPDAVreGETGYVVPGRDVAQLADRVATLLAD 340
                      777*****************************99**********************97 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   9.5e-16   4.2e-12       9      90 ..     285     368 ..     270     370 .. 0.93

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 9.5e-16
  Glyco_trans_1_2   9 espnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydhraeql 90 
                      e++  +++Ea a G ++++ d+ g ++ +++g+++ ++   d+++la++++ lla+++++r++++a+r++v++e +++  a++l
       KIR60818.1 285 EGLGIVYLEASATGLPVVAGDSGGAPDAVREGETGYVVPgrDVAQLADRVATLLADRDLARQLGAAGRAWVEREWRWETQAARL 368
                      778899************************************************************************999887 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   4.9   5.5e-11   2.5e-07       2     169 ..      16     171 ..      15     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 5.5e-11
  Glyco_transf_4   2 GGverhvleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrr.rl 95 
                     GG++ +v++La + +     V+v++++++g++        ++  v +   k ll ++  +rr++rl++r++ D v    +a+lg+ ++ lrr + 
      KIR60818.1  16 GGIQSFVHNLAVRQPTG--SVVVYASSWRGAEKFD---ADQPFEVVRERTKVLLPTPLIARRAARLARRHDCDTVWFGAAAPLGLLAAGLRRrAG 105
                     9**************98..9*******99999999...566777777778999999999****************66666666666556666567 PP

  Glyco_transf_4  96 giplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDle 169
                       ++V+  Hg++         + + + +r  +rr+ r ad ++   e+t+ +l++ ++     ++ + +GvD++
      KIR60818.1 106 VRRVVALTHGHE-------VGWAALPGARTALRRIGRGADVITYLGEYTRVRLERALH-GLTELHRLAPGVDVD 171
                     77889999****.......78899999999999**********************665.3356*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 3057.22
//
Query:       KIR60819.1  [L=270]
Description: hypothetical protein TK50_23500 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-101  339.4   1.9   1.7e-101  339.3   1.9    1.0  1  Methyltransf_19  S-adenosyl methyltransferase
      3e-06   27.9   0.0    5.3e-06   27.1   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    0.00024   20.9   0.0    0.00036   20.4   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    0.00036   20.4   0.0    0.00053   19.9   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
     0.0026   18.4   0.1     0.0092   16.7   0.0    1.9  2  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.013   16.1   0.0      0.079   13.6   0.0    2.1  1  Methyltransf_11  Methyltransferase domain
      0.028   14.0   0.0      0.045   13.3   0.0    1.3  1  MTS              Methyltransferase small domain
      0.086   13.1   0.1       0.21   11.9   0.0    1.7  2  HAD_SAK_2        HAD domain in Swiss Army Knife RNA repair pr
      0.088   12.4   0.0       0.21   11.2   0.0    1.6  1  NodS             Nodulation protein S (NodS)
        0.1   11.8   0.0        2.8    7.0   0.0    2.1  2  NNMT_PNMT_TEMT   NNMT/PNMT/TEMT family


Domain annotation for each model (and alignments):
>> Methyltransf_19  S-adenosyl methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.3   1.9  9.3e-105  1.7e-101       2     266 ..       5     267 ..       4     269 .. 0.96

  Alignments for each domain:
  == domain 1  score: 339.3 bits;  conditional E-value: 9.3e-105
  Methyltransf_19   2 aeasrridtsrphsaRvydylLGGkdnypvDreaaeallkalpelvkvaranRaflrRavrvlaeeaGirqflDiGtGlPtednvHqvaqrvaP 95 
                      ++a+++id++rp++aR+ydy+LGG++n+++Dr+aa+a+ +a+p++  +a+anRaflrRav++lae+ GirqflDiG+G+Pt  nvH++aqr+aP
       KIR60819.1   5 DWAPDTIDIERPSVARMYDYYLGGSHNFAADRAAARAMVAAVPDAPLMAQANRAFLRRAVQFLAEQ-GIRQFLDIGSGIPTVGNVHEIAQRIAP 97 
                      57899***********************************************************99.*************************** PP

  Methyltransf_19  96 esRvvYvDnDPivlaharallestpeGatdyieaDlrdpeeilespearevlDldrPvAlllvailhfveDeedaaaivrelvdalpaGsllvl 189
                      esRvvYvD DP+++ah+r +l+++++  + +++ Dlr+pe+il++pe++++lD+++PvA+++va+lhfv+De+++ +i+r+l++al++Gs+lv+
       KIR60819.1  98 ESRVVYVDVDPVAVAHSREILSGNDR--AVVLQEDLRHPERILAHPEVNRMLDFSQPVAVMIVAVLHFVPDEDRPDEILRTLRAALAPGSYLVM 189
                      *************************9..99**************************************************************** PP

  Methyltransf_19 190 shltedlnpeev..ekvekvykeaaaplrlRsrkeverffdglelvePGlvevteWrpdeeaeeeeteeeisvyagvar 266
                      s++++d + ++   e++e+vy+++++pl +Rsr+e++++fdg+ lv+PG+v v +Wrp++ ++ +e++e+ ++++gv+r
       KIR60819.1 190 SQASDDDRHDTGerEEAEAVYQRTDNPLVIRSRRELTALFDGFPLVDPGVVWVPQWRPETPES-TEDAEKAVFMGGVGR 267
                      ****99877654338899*******************************************86.889999999****98 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   2.9e-09   5.3e-06       1      98 [.      76     186 ..      76     187 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2.9e-09
  Methyltransf_12   1 LeiGcG..tGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg......ssfDlvvas.nvlhhl...kd 81 
                      L+iG+G  t  +++++++++ p++++++vD++p a+++ +e l+ +++  + + +l++ + +  +++       s  + v++  vlh +   + 
       KIR60819.1  76 LDIGSGipTVGNVHEIAQRIaPESRVVYVDVDPVAVAHSREILSGNDRAVVLQEDLRHPERILAHPEvnrmldFSQPVAVMIvAVLHFVpdeDR 169
                      6777773323356777777799**************************************9999999**99985666666666********888 PP

  Methyltransf_12  82 irevldnirklLkpgGr 98 
                      ++e+l+ +r++L+pg +
       KIR60819.1 170 PDEILRTLRAALAPGSY 186
                      88************976 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     2e-07   0.00036       6     113 ..      74     193 ..      70     228 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2e-07
  Methyltransf_31   6 rvlDlGCG..tGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsn.........evl...n 85 
                      ++lD+G+G  t   ++e+a+++ p+++vv +D ++ a+ ++re+++  g d++ + q+d  + e  l+   ++ +l++         +vl    
       KIR60819.1  74 QFLDIGSGipTVGNVHEIAQRIAPESRVVYVDVDPVAVAHSREILS--GNDRAVVLQEDLRHPERILAHPEVNRMLDFsqpvavmivAVLhfvP 165
                      56888888333344799**************************966..999**********966556666667766666666555556774556 PP

  Methyltransf_31  86 aladpdkileeiervlkpggilliedpr 113
                      +   pd+il+ +  +l pg++l++++++
       KIR60819.1 166 DEDRPDEILRTLRAALAPGSYLVMSQAS 193
                      666799*******************999 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.9e-07   0.00053       6     125 ..      57     201 ..      51     232 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.9e-07
  Methyltransf_23   6 eeelsdklerllpklraggrvLdiGcGtGi..llevlrengf...svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqg............ 81 
                      + +l++++++l+  ++     LdiG G  +  +  +++++ +    v+ vD +p+av+  +   + +    + +++ + p++            
       KIR60819.1  57 RAFLRRAVQFLA--EQGIRQFLDIGSGIPTvgNVHEIAQRIApesRVVYVDVDPVAVAHSReILSGNDRAVVLQEDLRHPERilahpevnrmld 148
                      456778888887..5666799*****97542344444444333678999999999999888634455555555666777777888888888899 PP

  Methyltransf_23  82 ..kfdlIvlrevlehvpd...ppellrqiatllkpgGylllseplasl....k 125
                        ++  +    vl+ vpd   p e lr++++ l+pg yl+ s    ++     
       KIR60819.1 149 fsQPVAVMIVAVLHFVPDedrPDEILRTLRAALAPGSYLVMSQASDDDrhdtG 201
                      9899999999*******7779*******************9997555433332 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       4.9   8.8e+03      80      97 .]      54      71 ..      31      71 .. 0.65
   2 !   16.7   0.0   5.1e-06    0.0092       2      96 ..      76     184 ..      75     184 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.9
                     HHHHHHHHHHHHHEEEEE CS
  Methyltransf_25 80 edlekalkeiarvLkpgG 97
                     +  +++l+++ + L ++G
       KIR60819.1 54 QANRAFLRRAVQFLAEQG 71
                     344667777777776665 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 5.1e-06
                      EEET-TTSH..HHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG....BS..SSTTTEEE....EEEEST.GGGSSHHH CS
  Methyltransf_25   2 LdlGcGtGr..ltlalakrl.gkakvtgvDiseemleaareraeeeglnvefvqgdaed....lp..fedgsfDl....vvssga.lhhlsded 81 
                      Ld+G G  +  ++ ++a+r+ ++++v+ vD+++ ++++ re ++ ++ ++ ++q d+++    l   + ++  D+     v++ a lh+++ded
       KIR60819.1  76 LDIGSGIPTvgNVHEIAQRIaPESRVVYVDVDPVAVAHSREILSGND-RAVVLQEDLRHperiLAhpEVNRMLDFsqpvAVMIVAvLHFVPDED 168
                      78888864312567888888679*******************96554.9999999996633332133333333322222333344499999988 PP

                      H.HHHHHHHHHHEEEE CS
  Methyltransf_25  82 l.ekalkeiarvLkpg 96 
                      + +++l+ ++ +L pg
       KIR60819.1 169 RpDEILRTLRAALAPG 184
                      7367999999999998 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.4e-05     0.079       1      96 []      76     189 ..      76     189 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.4e-05
                      EEET-T...TSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC......TS....S-T.T-EEEEEEES-CCC-...C CS
  Methyltransf_11   1 LdvGcG...tGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaek......lp....fed.nsfDlvvssevlhhv...e 75 
                      Ld+G+G    G + e  ++ +  +rvv vD+++ +++ ++e  s+++    ++++d+++       p    + d ++  +v++  vlh+v   +
       KIR60819.1  76 LDIGSGiptVGNVHEIAQRIApeSRVVYVDVDPVAVAHSREILSGNDR-AVVLQEDLRHperilaHPevnrMLDfSQPVAVMIVAVLHFVpdeD 168
                      788888764455555555555999************999888888775.334444444322331111111122214456788889999999988 PP

                      CHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  76 dpekalkeiaRvLkpgGllvi 96 
                      +p+++l+ ++  L pg +lv+
       KIR60819.1 169 RPDEILRTLRAALAPGSYLVM 189
                      9*****************985 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.5e-05     0.045      26      87 ..      66     129 ..      55     136 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.5e-05
                 HCHCCTCSEEEEET-TTSHHH...HHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE- CS
         MTS  26 tlpkelsgkvlDlGcGaGvlg...aalakespeaevtlvdvdarAlesakenleanklevevvas 87 
                  l ++  ++ lD+G+G+  +g     +++  pe +v+ vdvd  A++ ++e l+ n+  + v+++
  KIR60819.1  66 FLAEQGIRQFLDIGSGIPTVGnvhEIAQRIAPESRVVYVDVDPVAVAHSREILSGNDR-AVVLQE 129
                 5666656789******8666611155778899999****************9999985.445555 PP

>> HAD_SAK_2  HAD domain in Swiss Army Knife RNA repair proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.21      26     117 ..      98     194 ..      75     226 .. 0.78
   2 ?   -1.6   0.0       1.7   3.1e+03      41      57 ..     234     250 ..     198     260 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
   HAD_SAK_2  26 a.......ldpeaverlkriveatgakiVlsstWrrred....eelkallkaag..rpriigvtpdlpeeeseeekksRaqeilewlrrheeveawval 111
                 +       +dp av++ ++i++  +  +Vl  + r+ e+     e++++l   +  +  i++v    p+e       +R +eil+ lr+   ++++++ 
  KIR60819.1  98 EsrvvyvdVDPVAVAHSREILSGNDRAVVLQEDLRHPERilahPEVNRMLDFSQpvAVMIVAVLHFVPDE-------DRPDEILRTLRAALAPGSYLVM 189
                 244556668999************************9999988779999999998777888888878776.......9************889999888 PP

   HAD_SAK_2 112 DDkael 117
                    a++
  KIR60819.1 190 SQ-ASD 194
                 54.222 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.7
   HAD_SAK_2  41 atgakiVlsstWrrred 57 
                   +  +V+  +Wr + +
  KIR60819.1 234 LVDPGVVWVPQWRPETP 250
                 45566888888887776 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00012      0.21      98     180 ..     143     225 ..      65     230 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
        NodS  98 vqqfstdekfdlivvaevlyyiedvaelraavrnlvsllapdgqlvfGsardavcrrwGhvaGaetvlallneslleverlei 180
                 v+++    +   +++  vl+++ d  +    +r l   lap+ +lv+  a d+  +  G    ae+v +  ++ l++  r+e+
  KIR60819.1 143 VNRMLDFSQPVAVMIVAVLHFVPDEDRPDEILRTLRAALAPGSYLVMSQASDDDRHDTGEREEAEAVYQRTDNPLVIRSRREL 225
                 44433333333456667**************************************************9999998887777665 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0016       2.8      34      70 ..      52      86 ..      42     101 .. 0.82
   2 ?    2.7   0.0     0.033        59     180     212 ..     172     204 ..     124     213 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0016
                    CCCCHHHHHHHHHHHHHHTSSS-ECEEEEET-T.T--G CS
  NNMT_PNMT_TEMT 34 aeeqvvlfaLknllqtlatgekkgdtllDiGaG.PTvy 70
                    + +q  + +L+  +q la  e+  +++lDiG+G PTv 
      KIR60819.1 52 M-AQANRAFLRRAVQFLA--EQGIRQFLDIGSGiPTVG 86
                    4.6777889999999999..7778*********99985 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.033
                     HHHHHHHTTEEEEEEEEEEEECS-SEEEETTEE CS
  NNMT_PNMT_TEMT 180 ralrnlasllkpGGhlvlggvleeseynvGekk 212
                     + lr l  +l pG +lv+ ++ +++   +Ge++
      KIR60819.1 172 EILRTLRAALAPGSYLVMSQASDDDRHDTGERE 204
                     56899999*********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2152.02
//
Query:       KIR60820.1  [L=222]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-24   86.3   0.0    2.3e-24   85.7   0.0    1.3  1  Response_reg  Response regulator receiver domain
    9.3e-19   66.7   0.0    1.4e-18   66.2   0.0    1.3  1  GerE          Bacterial regulatory proteins, luxR family
    1.6e-06   27.7   0.0    3.3e-06   26.7   0.0    1.5  1  Sigma70_r4_2  Sigma-70, region 4
    0.00014   21.6   0.0    0.00029   20.5   0.0    1.6  1  HTH_23        Homeodomain-like domain
     0.0009   18.7   0.0      0.002   17.6   0.0    1.6  1  Sigma70_r4    Sigma-70, region 4
     0.0012   18.8   0.5      0.014   15.4   0.0    2.6  2  HTH_20        Helix-turn-helix domain
     0.0028   18.1   0.0     0.0062   17.0   0.0    1.5  1  HTH_40        Helix-turn-helix domain
     0.0035   16.7   0.0     0.0076   15.6   0.0    1.5  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
      0.005   16.6   0.1       0.01   15.6   0.1    1.5  1  HTH_30        PucR C-terminal helix-turn-helix domain
     0.0058   16.7   0.0      0.013   15.5   0.0    1.6  1  HTH_7         Helix-turn-helix domain of resolvase
     0.0071   16.4   0.0       0.02   15.0   0.0    1.8  1  HTH_28        Helix-turn-helix domain
     0.0086   16.0   0.1      0.042   13.8   0.0    2.0  2  HTH_11        HTH domain
     0.0097   15.8   0.0      0.021   14.7   0.0    1.5  1  HTH_5         Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.021   14.6   0.0    1.6  1  HTH_38        Helix-turn-helix domain
       0.02   14.8   0.1       0.34   10.8   0.0    2.4  2  MarR_2        MarR family
      0.029   13.9   0.0      0.051   13.1   0.0    1.5  1  HTH_24        Winged helix-turn-helix DNA-binding
      0.034   13.9   0.2      0.078   12.8   0.2    1.6  1  DUF742        Protein of unknown function (DUF742)
      0.037   13.8   0.6       0.67    9.8   0.1    3.0  3  HTH_10        HTH DNA binding domain
       0.19   12.3   0.0       0.32   11.6   0.0    1.3  1  Mga           Mga helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.0   2.5e-27   2.3e-24       1     111 [.      13     124 ..      13     125 .. 0.97

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 2.5e-27
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   vl+vdD+ l+r++lr ++e ++++e+v+ea++++e ++++ + ++d++++D+++p+ +Gle+++ +r+ + ++ +++lt+++ ++++  al+aga+ 
    KIR60820.1  13 VLLVDDHDLIRKGLRHAFErDRQFEVVGEAATAAEGVRQAGALQPDVVIMDLRLPDGSGLEATRALRKSSASMGIVVLTMYAGDDQLFGALEAGASA 109
                   89*****************999*************************************************************************** PP

                   EEESSG-HHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkal 111
                   f+ K    +e+++a+
    KIR60820.1 110 FVPKTAPADEVVAAA 124
                   *****9999998875 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   1.4e-21   1.4e-18       2      56 ..     153     207 ..     152     208 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 1.4e-21
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrl 56 
                 +Ls+RE +vLrlla+G+s+  IA++l++Se T k+h+s +++KL++ +r+++ + 
  KIR60820.1 153 QLSPREGQVLRLLADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMT 207
                 6**************************************************9876 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   3.4e-09   3.3e-06      10      54 .]     153     196 ..     152     196 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 3.4e-09
                   TS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  10 eLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   +L++r+ +++ l   +g+s + IA++l +se+t k+++s+  +kL
    KIR60820.1 153 QLSPREGQVLRL-LADGMSVAGIAKQLFVSESTAKTHISKLYEKL 196
                   8***********.68************************987776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.1e-07   0.00029       9      45 ..     160     197 ..     157     205 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.1e-07
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTvy.rwlkryreeG 45 
                 ++l+lla+G+sv+ IA++L vs++T   ++ k y++ G
  KIR60820.1 160 QVLRLLADGMSVAGIAKQLFVSESTAKtHISKLYEKLG 197
                 89***********************9977777776555 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.1e-06     0.002       4      48 ..     153     196 ..     152     198 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.1e-06
                 HS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   4 sLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 +L++re +vl+l  + g++ + I+++l +S+++++ ++++  +kL
  KIR60820.1 153 QLSPREGQVLRLLAD-GMSVAGIAKQLFVSESTAKTHISKLYEKL 196
                 79*********9875.66**********************99999 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.65   6.1e+02      22      34 ..     131     143 ..     119     153 .. 0.81
   2 !   15.4   0.0   1.5e-05     0.014      14      50 ..     160     194 ..     154     202 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.65
                 CTTB-HHHHHHHH CS
      HTH_20  22 aegltaselaerl 34 
                 + ++ta++lae++
  KIR60820.1 131 PSAFTAADLAEAM 143
                 6789******998 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.5e-05
                 HHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHH CS
      HTH_20  14 rilraLaraegltaselaerldlskntlsyHLrvLee 50 
                  +lr+L  a+g++++ +a++l +s +t+  H+ +L e
  KIR60820.1 160 QVLRLL--ADGMSVAGIAKQLFVSESTAKTHISKLYE 194
                 589***..***************************87 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   6.5e-06    0.0062       6      39 ..     162     195 ..     158     211 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.5e-06
      HTH_40   6 lelleeglsieeIAkerglkesTIegHLaeliee 39 
                 l+ll +g+s++ IAk+  ++esT  +H+ +l+e+
  KIR60820.1 162 LRLLADGMSVAGIAKQLFVSESTAKTHISKLYEK 195
                 899***************************9997 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   8.1e-06    0.0076      18      44 ..     159     185 ..     158     188 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8.1e-06
  HTH_Tnp_ISL3  18 ayilelllesrsvkavArqlgvSwtTV 44 
                    ++l+ll +++sv+ +A+ql vS++T 
    KIR60820.1 159 GQVLRLLADGMSVAGIAKQLFVSESTA 185
                   589**********************96 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.1e-05      0.01       9      57 ..     165     213 ..     161     214 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.1e-05
                 HHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHHHHHHHHH CS
      HTH_30   9 lenggnisatAkaLhvHrnTlryRLrrieellgldlddpddrlaLylAl 57 
                 l+ g++++  Ak+L+v+  T +  + ++ e lg   +  + ++aL l l
  KIR60820.1 165 LADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGL 213
                 78899****************************9888777777777765 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.4e-05     0.013      13      37 ..     160     184 ..     152     186 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-05
                 GGGSSTTTT--STTTSSSS---SSS CS
       HTH_7  13 rvvkLleeGisiskIAkevnisRsT 37 
                 +v++Ll++G+s++ IAk++ +s sT
  KIR60820.1 160 QVLRLLADGMSVAGIAKQLFVSEST 184
                 8********************9998 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.1e-05      0.02       4      38 ..     160     194 ..     159     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.1e-05
      HTH_28   4 eiikllaaGhsvreaArelgisrrtvyrWikryee 38 
                 ++++lla+G+sv+ +A++l +s++t +  i+++ e
  KIR60820.1 160 QVLRLLADGMSVAGIAKQLFVSESTAKTHISKLYE 194
                 689***********************888877554 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.2   1.1e+03      14      25 ..     132     143 ..     128     145 .. 0.78
   2 !   13.8   0.0   4.5e-05     0.042       4      43 ..     160     197 ..     157     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.2
      HTH_11  14 gpisgeeLAeeL 25 
                 + +++++LAe +
  KIR60820.1 132 SAFTAADLAEAM 143
                 569******986 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 4.5e-05
      HTH_11   4 qilelLleargpisgeeLAeeLnvSrrtvrrdIkaL.eelg 43 
                 q+l+lL  a+g +s + +A++L vS++t   +I +L e+lg
  KIR60820.1 160 QVLRLL--ADG-MSVAGIAKQLFVSESTAKTHISKLyEKLG 197
                 566666..555.99**********************77776 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.2e-05     0.021       6      41 ..     160     194 ..     156     195 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.2e-05
                 HHHHHHTTSSEEHHHHHHHHTS-HHHHHHHHHHHHH CS
       HTH_5   6 kILklLaegelcvcelaeelglsqstvShHLkkLre 41 
                 ++L+lLa+g ++v  +a++l +s+st   H +kL+e
  KIR60820.1 160 QVLRLLADG-MSVAGIAKQLFVSESTAKTHISKLYE 194
                 578888887.9***********************98 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.2e-05     0.021      12      36 ..     160     184 ..     150     195 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.2e-05
      HTH_38  12 eIerllaeGlslreIArrLgrspsT 36 
                 +  rlla G+s++ IA++L +s sT
  KIR60820.1 160 QVLRLLADGMSVAGIAKQLFVSEST 184
                 5679********************9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.38   3.6e+02      19      31 ..     131     143 ..     120     146 .. 0.77
   2 ?   10.8   0.0   0.00036      0.34       3      46 ..     154     193 ..     152     195 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.38
                 TSEEEHHHHHHHH CS
      MarR_2  19 grdltvgelarrl 31 
                 +  +t+++la+++
  KIR60820.1 131 PSAFTAADLAEAM 143
                 3369******987 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00036
                 --HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHH CS
      MarR_2   3 ltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLv 46 
                 l+p + +vL  L+++    ++v+ +a+ l +s s++  ++ +L 
  KIR60820.1 154 LSPREGQVLRLLADG----MSVAGIAKQLFVSESTAKTHISKLY 193
                 8999********777....9****************99999986 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.4e-05     0.051       8      43 ..     161     194 ..     154     195 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.4e-05
      HTH_24   8 ILelLqknprisqreLAerlglSpstvnrrlkrLee 43 
                 +L+lL +  ++s + +A++l +S st ++++ +L e
  KIR60820.1 161 VLRLLAD--GMSVAGIAKQLFVSESTAKTHISKLYE 194
                 5555555..99**********************965 PP

>> DUF742  Protein of unknown function (DUF742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   8.3e-05     0.078      35      81 ..     148     194 ..     119     210 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.3e-05
      DUF742  35 apeaarlqpehrailrLcreplsVaelaAelklPvgvvrvLlsdLld 81 
                 ap+ ++l+p + ++lrL ++ +sVa +a +l +  ++++  +s L +
  KIR60820.1 148 APSGPQLSPREGQVLRLLADGMSVAGIAKQLFVSESTAKTHISKLYE 194
                 3555899************************9999999999998876 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.7   3.5e+03      22      33 ..     132     143 ..     130     143 .. 0.77
   2 ?    9.8   0.1   0.00071      0.67      25      51 ..     170     196 ..     168     198 .. 0.89
   3 ?    0.1   0.0      0.77   7.3e+02       7      21 ..     203     217 ..     200     219 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.7
      HTH_10  22 RrvtlkeLAkel 33 
                    t+++LA+++
  KIR60820.1 132 SAFTAADLAEAM 143
                 5678999*9976 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00071
      HTH_10  25 tlkeLAkelGIskstlsehLrkaeskl 51 
                 +++ +Ak+l +s+st++ h++k  +kl
  KIR60820.1 170 SVAGIAKQLFVSESTAKTHISKLYEKL 196
                 56789*****************99887 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.77
      HTH_10   7 evlklAyemGYFdyP 21 
                 ++l +A+++G  + P
  KIR60820.1 203 QALMTALRLGLLEAP 217
                 7999******99987 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00034      0.32      29      58 ..     167     196 ..     160     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00034
                 SEEEHHHHHHHCT--HHHHHHHHHHHHHHC CS
         Mga  29 eevsieelaqelyiSestlkrkikelnklL 58 
                 + +s++ +a++l++Sest+k +i +l + L
  KIR60820.1 167 DGMSVAGIAKQLFVSESTAKTHISKLYEKL 196
                 56788999*****************98877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 1934.23
//
Query:       KIR60821.1  [L=565]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-14   53.2   0.8    3.2e-14   53.2   0.8    3.4  4  HisKA_3      Histidine kinase
    4.1e-10   40.1   0.7    9.5e-10   38.9   0.7    1.7  1  GAF_3        GAF domain
    2.6e-07   31.1   0.0    1.7e-06   28.5   0.0    2.2  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
     0.0037   17.6   0.9     0.0037   17.6   0.9    2.5  2  GAF_2        GAF domain
      0.008   16.1   0.2      0.031   14.2   0.1    2.1  2  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.089   12.6   0.0       0.18   11.7   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
        3.5    7.3   7.3         63    3.2   7.3    2.4  1  2-Hacid_dh   D-isomer specific 2-hydroxyacid dehydrogenase, c
        8.6    6.6   9.5       0.87    9.8   0.9    2.8  2  DUF4381      Domain of unknown function (DUF4381)


Domain annotation for each model (and alignments):
>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.1   2.6e+03      49      63 ..     190     204 ..     169     209 .. 0.71
   2 ?   -1.7   0.1       1.9   4.3e+03      49      66 ..     215     232 ..     212     234 .. 0.76
   3 !   53.2   0.8   1.4e-17   3.2e-14       1      66 [.     353     418 ..     353     420 .. 0.97
   4 ?   -2.2   0.2       2.9   6.4e+03      32      49 ..     453     470 ..     442     478 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHH CS
     HisKA_3  49 arealqevRrllhnL 63 
                 a + l+++R + ++L
  KIR60821.1 190 ATRLLTQLRTVARQL 204
                 455566666666665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHHHHTTH CS
     HisKA_3  49 arealqevRrllhnLrpa 66 
                 +++ l+e+R + ++ r a
  KIR60821.1 215 SEHLLEELRTVARAERAA 232
                 677899999999887755 PP

  == domain 3  score: 53.2 bits;  conditional E-value: 1.4e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLrpa 66 
                 ER+r+ARE+HD+v+q+L+++   ++ a + +e+dp+++ae+lr+++  + + ++e+R  l +Lr++
  KIR60821.1 353 ERQRLAREIHDGVAQELVMVGYGIDNALAYVEEDPKETAEALRTLRGEVTRVITELRLSLFELRSE 418
                 9***************************************************************75 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.9
                 TT-HHHHHHHHHHHHHHH CS
     HisKA_3  32 ekdpekaaeqlreieela 49 
                 ++ p++++++l +i++ a
  KIR60821.1 453 ARLPAATEAELLRIAQEA 470
                 455555555555555544 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.7   4.2e-13   9.5e-10       3     128 ..     212     337 ..     210     338 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 4.2e-13
       GAF_3   3 dellekllkllvkllgaevgalllldedgnklqvaagw.dgkpalsesldedsalarralssgevvsepsfaeedgl.pdraalavPLvagrqviGvla 99 
                   + e+ll++l  + +ae++a+l    +g +l+v a+      +++++ld+dsa a++++s ++++++ ++ +++ +  d +al+vPLvag +++G+l+
  KIR60821.1 212 GGISEHLLEELRTVARAERAAVLSAS-GGGRLVVLAQVgVDRVDWETTLDADSAIADAWAS-QQPQTASRSQARSHTgGDVSALIVPLVAGVRTVGMLV 308
                 568899****************7777.5566667777645666677799999999999955.669999888777777359******************* PP

       GAF_3 100 lastkprafdaedlelleslArqiataie 128
                 ++ +  +a+ +  ++ + +l+r +a+ +e
  KIR60821.1 309 MEADVAQAYPPPVVSRVTALTRPAALRLE 337
                 ***********999999999999999987 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   7.5e-10   1.7e-06       4     107 ..     461     545 ..     458     549 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 7.5e-10
                 HHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEE CS
   HATPase_c   4 krLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGt 102
                   L +i +++v+Na k+ + a +++v+++++  + +i+v+D+G Gi ++  +                 g+ +Gl+i+ + +e+++G+++++ ++  Gt
  KIR60821.1 461 AELLRIAQEAVTNARKH-AGAANLWVTCEVDPPYAQIEVSDDGHGIGEQRTD-----------------GH-YGLAIMAERAERIRGRLEIRPRQPSGT 540
                 67889************.88999******9777**************97766.................44.59******9999*******999999** PP

                 EEEEE CS
   HATPase_c 103 tftft 107
                 t+ + 
  KIR60821.1 541 TVAVV 545
                 *9876 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.9   1.7e-06    0.0037       3     134 ..     210     333 ..     208     337 .. 0.74
   2 ?   -1.6   0.2       1.4     3e+03       7       7 ..     425     425 ..     352     479 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHHHHHHS.S..EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT--EEEEEE-T CS
       GAF_2   3 dleelldlvldelvel.gaalgyillvdddgglrlaawgeaeeefgaaldrplgeglvgealrtgrpvilndleedpdkkglpaghaglrsflavPlis 100
                 d+  + +++l+el+++  a+ + +l   ++g+l+++a  + ++ + + +    +++ +++a+++++p   +        ++++    g  s l+vPl++
  KIR60821.1 210 DPGGISEHLLEELRTVaRAERAAVLSASGGGRLVVLAQVGVDRVDWETT--LDADSAIADAWASQQPQTASR-------SQARSHTGGDVSALIVPLVA 299
                 66778999*******967**99999999888866665555555554444..2244469********999644.......4445567788899******* PP

                 TS---EEEEES......--HHHHHHHHHHHHHHH CS
       GAF_2 101 egrvvGvlnlyankppafdeedlelLeelaeqia 134
                 + r+vG+l++ a+  +a+ +  ++ +++l + +a
  KIR60821.1 300 GVRTVGMLVMEADVAQAYPPPVVSRVTALTRPAA 333
                 99*******9888888887766666666666665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.4
                 H CS
       GAF_2   7 l 7  
                 l
  KIR60821.1 425 L 425
                 2 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.6   5.8e+03       5      34 ..     194     224 ..     191     227 .. 0.71
   2 !   14.2   0.1   1.4e-05     0.031      21      80 ..     452     507 ..     435     545 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.6
  HATPase_c_2   5 pehvrt.vrevaeavlrraglseelldeirl 34 
                  ++++rt +r+   a l   g+se ll+e+r 
   KIR60821.1 194 LTQLRTvARQLPGATLDPGGISEHLLEELRT 224
                  6788884555555558889999999999885 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.4e-05
  HATPase_c_2  21 raglseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdp 80 
                  +a+l++++ +e+   ++Ea+tNa +ha      + + v++e+d+   ++ev+D+G+g   
   KIR60821.1 452 TARLPAATEAELLRIAQEAVTNARKHAGA----ANLWVTCEVDPPYAQIEVSDDGHGIGE 507
                  478888899999999*************8....667888999*************99543 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.8e-05      0.18       9      60 ..     469     522 ..     466     533 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.8e-05
  HATPase_c_3   9 elvdNsld.AdaenvkievnknrgktgeivieDdGkGmseeelkn..alrlatss 60 
                  e v N+   A a n  ++++ ++   ++i + DdG+G+ e+  +   +l ++ ++
   KIR60821.1 469 EAVTNARKhAGAANLWVTCEVDP-PYAQIEVSDDGHGIGEQRTDGhyGLAIMAER 522
                  67889987799999888888876.679***********99987763344444444 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   7.3     0.028        63      52     123 ..     230     477 ..     222     483 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.028
                 SHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH................................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................ RF
  2-Hacid_dh  52 taevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt................................................ 102
                  a+vl+a  + +++++a vGvD vD ++      +++ + +++   +A                                                   
  KIR60821.1 230 RAAVLSASGGGRLVVLAQVGVDRVDWETTLDADSAIADAWASQQPQTASRSqarshtggdvsalivplvagvrtvgmlvmeadvaqaypppvvsrvtal 328
                 5789999999999************99999999999999999999999888889999999999999999999999999999999999999999999999 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  KIR60821.1 329 trpaalrleaallfdevrslatneerqrlareihdgvaqelvmvgygidnalayveedpketaealrtlrgevtrvitelrlslfelrsevdrhgglaa 427
                 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                 .............................T-BHHHHHHHHHHHHHHHHHH CS
                 .............................xxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 .............................aaTeeaqeniaeeaaenlvaf 123
                                              aaTe  + +ia+ea++n ++ 
  KIR60821.1 428 aiaeyartvgasgglrvhlsldestarlpAATEAELLRIAQEAVTNARKH 477
                 99999999999999999999999999999999999999999999998875 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   2.1      0.41   9.1e+02       5      36 ..       3      33 ..       1      62 [. 0.78
   2 ?    9.8   0.9   0.00039      0.87      22     113 ..     158     257 ..     148     286 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.41
     DUF4381  5 DihlPepvswwPpapGwwlllaalllllllvl 36
                D  +P+ ++  P+a    ++++al+++l  ++
  KIR60821.1  3 DSSTPARPPTQPLATAARVVMLALVAVL-TLF 33
                5678999999999999998886655533.333 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00039
     DUF4381  22 wlllaalll.llllvlalwllrrrkrn..rreAlreLaalr.......adeadakellaalselLkrvalayypreevagltGeaWlafLdatlpakgf 110
                 wl+la+l l  +  +  + ++r + ++    eA r+L++lr        +  d+  + + l e L+ va+a  +r++v + +G   l +L++      +
  KIR60821.1 158 WLILAGLGLyTAGTLHRVIRVRSEGKPqpYAEATRLLTQLRtvarqlpGATLDPGGISEHLLEELRTVARA--ERAAVLSASGGGRLVVLAQVGVDRVD 254
                 77775666666666666666664444456999**********9999988899999999*********9999..77899999999988888887666655 PP

     DUF4381 111 asg 113
                 ++ 
  KIR60821.1 255 WET 257
                 555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3890.92
//
Query:       KIR60822.1  [L=151]
Description: cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-15   56.0   0.4    5.7e-15   55.8   0.4    1.0  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
    5.3e-09   36.4   0.0    7.7e-09   35.8   0.0    1.3  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
      0.004   17.3   0.2      0.042   13.9   0.0    2.0  2  DUF2505          Protein of unknown function (DUF2505)


Domain annotation for each model (and alignments):
>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.4   9.5e-19   5.7e-15       4     143 .]       5     145 ..       2     145 .. 0.81

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 9.5e-19
                      EEEEEEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSE..STSSSTTTEEEEECCCSSEEEEEEEEEE.T.TTTEEEEEEE.SSS-TSE.EEEE CS
  Polyketide_cyc2   4 vtvsvviaappekVwalvsdfenwprWhpevarveleg..gggpargvegtvrvggrgtvreelvevd.p.egrllsyrivkpvpvany.vatw 92 
                       t+s+vi a+pe+V a++ df+ +p+W  +v+r+e+++  ++g a++v++t+ +g +  + e +++++ + +  ++++ +v+p ++ +  ++++
       KIR60822.1   5 STQSIVIGASPERVAAVICDFARYPEWTDAVRRTEVVEeyEDGYASQVRFTLDAGVL--ADEYVLAYEyAeDISRIEWHLVAPSKMQRSqRGSY 96 
                      699********************************9975556665777788888886..9999999997668899*****84555554449999 PP

                      EEEECCET.EEEEEEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  93 tvtpdggg.trvtwtgefdagplggpfekpaaakavkgdleagLerLkarle 143
                       +   ++g t+vt+t e++     g++ + + +ka k +++a+L++Lk+r+e
       KIR60822.1  97 DLVGNPDGtTTVTYTLEVEL--SVGML-GMFRRKAEKMIMDAALKQLKRRVE 145
                      99999999677*****9995..22343.444566666679**********98 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.3e-12   7.7e-09       1     126 [.      11     137 ..      11     141 .. 0.72

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.3e-12
                     ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE...EEEECSTTSSCEEEEEEEEEEETTTEEECTTCCCCCEEEEEEEECTECC....EEE CS
  Polyketide_cyc   1 vpapadqvyalvadvesypeflphcssvevleeaesglsadlevgfggltesftarvtldppeeitfklvegdfkslegkWtieslpp....nsg 91 
                     + a+++ v a++ d+ +ype++  +++ ev+ee e+g+      +++ l +   a+ +   +e+          +  +++W+++  ++    ++g
      KIR60822.1  11 IGASPERVAAVICDFARYPEWTDAVRRTEVVEEYEDGYAS---QVRFTLDAGVLADEYVLAYEY--------AEDISRIEWHLVAPSKmqrsQRG 94 
                     6799*******************************73222...233444444455555555555........33455788888666656655333 PP

                     ........CEEEEEEEEEEEE-SSCHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc  92 ........gtrtkvalevdfkfaspllgalvgqvaervldell 126
                             +  t+v+++++++ ++++lg++ +++++ + d  l
      KIR60822.1  95 sydlvgnpDGTTTVTYTLEVELSVGMLGMFRRKAEKMIMDAAL 137
                     77777778666*********99999999999998887776666 PP

>> DUF2505  Protein of unknown function (DUF2505)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.046   2.8e+02       6      51 ..      11      56 ..       6      65 .. 0.60
   2 !   13.9   0.0   7.1e-06     0.042     100     150 ..      89     143 ..      72     149 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.046
     DUF2505  6 ypapvdrvyaaltdeeywearleevgaeesevtseeveedgvtvtv 51
                + a+++rv+a+++d + + +   +v+ +e   + e+  +++v+ t+
  KIR60822.1 11 IGASPERVAAVICDFARYPEWTDAVRRTEVVEEYEDGYASQVRFTL 56
                5688899999998877776666666555443333333344455444 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 7.1e-06
     DUF2505 100 pvelsGtltLepege.gtrlevegevkvkiPlvG...gklEklvaenleelldre 150
                 + + +G + L ++ + +t+++++ ev+ ++ ++G   +k Ek+++++  + l+r 
  KIR60822.1  89 QRSQRGSYDLVGNPDgTTTVTYTLEVELSVGMLGmfrRKAEKMIMDAALKQLKRR 143
                 44456*******77757*****************888899999999877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1140.80
//
Query:       KIR60823.1  [L=315]
Description: glucokinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-76  257.7   1.1    1.8e-76  257.5   1.1    1.0  1  ROK           ROK family
     0.0061   16.1   2.6      0.012   15.1   0.7    2.1  2  BcrAD_BadFG   BadF/BadG/BcrA/BcrD ATPase family
  ------ inclusion threshold ------
      0.025   14.4   0.2      0.046   13.5   0.2    1.4  1  Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.5   1.1   2.9e-80   1.8e-76       1     293 [.       4     314 ..       4     315 .] 0.97

  Alignments for each domain:
  == domain 1  score: 257.5 bits;  conditional E-value: 2.9e-80
                 EEEEEE-SSEEEEEEEETTS-EEEEEEEEEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCCCCTTHHHHHHHHHTS- CS
         ROK   1 tigidiGgtkialalvdeegeilarekvetptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitwenfdlvekleerlnvp 99 
                 tig+d+Ggtk+a  +vd+ g++l + + +tp++++ +t  d+i e+v+e++ + +++ avgig++G i+ ++++++++pn+ w++++l + ++ ++++p
  KIR60823.1   4 TIGVDVGGTKVAGGVVDDTGNVLVQARRDTPADNVGKTR-DVIIEVVTELA-AGRQIDAVGIGAAGWIDATRSTVLFAPNLAWRDEPLRDYVSRATGLP 100
                 59*********************************9997.9999***9995.578899***************************************** PP

                 EEEEEHHHHHHHHHHHHCTTTTTS-.EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHHCHTC....... CS
         ROK 100 vevenDvnaaalaEavfgaskdven.viyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqgClEtlasgralekraqq....... 190
                 v+venD n aa+aE   ga+  +++ +++ t+gtGvG+G++++g+l++G++G+a+elGH+   p+g +cgCG+ gC+E++asg al + a+        
  KIR60823.1 101 VIVENDGNVAAWAEFRYGAARHADDsMVMFTIGTGVGGGIVLGGELVRGAHGIAAELGHMLTVPDGHQCGCGRLGCIEQYASGSALVRFARAaarqeph 199
                 *****************9998887527889**********************************************************9999999**** PP

                 ...........CGTTS-HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHH.HHHHHHHHHCCTTTTCCCT-EEEE-S CS
         ROK 191 ...........kgekleakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadkll.eairklvkkylnkklevpvveivaak 277
                            + e++++  +  +a+ gd+v++e+  +++++l+ ++ad++ ++dpq+ v+gGgv++a +ll  + r++++  l++  + pv+e+++a+
  KIR60823.1 200 ravallelaggEAEAVTGPMVTAAAQGGDPVSAEAFAQVGRWLGTSLADMAQILDPQVLVVGGGVVDAGDLLlGPTRRSFTDALAQRSRLPVAEVLPAE 298
                 **********99999************************************************************************************ PP

                 -STTHHHHHHHHHHCC CS
         ROK 278 lgdkagllGaaaLake 293
                 lg+ ag++Gaa+La++
  KIR60823.1 299 LGNTAGVIGAADLARR 314
                 *************985 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.7     2e-06     0.012       1      61 [.       5      62 ..       5     162 .. 0.72
   2 ?    0.8   0.0     0.047   2.8e+02     177     227 ..     217     265 ..     211     312 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2e-06
                 EEEEE-SSEEEEEEEETTTEEEEEEEE--TTS-HHH.........HHHHHHHHHHT--GGG CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekgevlgrgitnsanlesvrfeaaekvleealtealerageeead 61
                 +G+D+G+T++   ++d+ g+vl ++   +   ++v+  + ++v+ e++te+ +  + ++  
   KIR60823.1  5 IGVDVGGTKVAGGVVDDTGNVLVQARRDTPA-DNVG--KTRDVIIEVVTELAAGRQIDAVG 62
                 7*******************98877654422.2233..44688888888888777776665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.047
                  HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTT---SS.EEEESGGG CS
  BcrAD_BadFG 177 aeaelrdalsggekaedIlaglhraialrvialisrsggvtdevtltGGva 227
                   +++  +a+ g+ ++ + +a++ r + ++++ +++ ++     +++ GGv 
   KIR60823.1 217 GPMVTAAAQGGDPVSAEAFAQVGRWLGTSLADMAQILDPQ--VLVVGGGVV 265
                  6778888999999999999999999999999999888777..355555554 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   7.7e-06     0.046      61     134 ..     176     252 ..     173     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.7e-06
  Succ_CoA_lig  61 ylEsirdgrkflsaarraarkkp...vvvlksGrseagaraaashtgalagsdavvdaafrqaGvlrvdsleelfda 134
                   ++E+   g ++++ ar+aar+ p   v +l     ea a +    t+a  g d v  +af+q+G    +sl +++++
    KIR60823.1 176 CIEQYASGSALVRFARAAARQEPhraVALLELAGGEAEAVTGPMVTAAAQGGDPVSAEAFAQVGRWLGTSLADMAQI 252
                   7999999999999999999885444488889999999999999***********************99999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2395.80
//
Query:       KIR60824.1  [L=467]
Description: monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-64  218.2   0.0    1.9e-64  218.0   0.0    1.0  1  FMO-like       Flavin-binding monooxygenase-like
    7.2e-21   74.7   0.0    1.9e-16   60.2   0.0    2.3  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    4.4e-17   62.2   0.0    5.9e-14   52.0   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      5e-11   42.3   0.0    3.9e-09   36.1   0.0    2.8  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    2.5e-08   34.0   0.0      7e-07   29.4   0.0    2.7  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    1.5e-06   28.1   2.5       0.16   11.5   0.3    3.6  4  DAO            FAD dependent oxidoreductase
    0.00017   21.6   2.2        0.1   12.6   0.0    3.9  4  NAD_binding_9  FAD-NAD(P)-binding
     0.0011   18.4   0.1       0.12   11.7   0.0    2.2  2  ThiF           ThiF family
     0.0017   18.9   2.0       0.53   10.9   0.1    2.4  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0019   17.5   0.4       0.02   14.1   0.1    2.1  2  Thi4           Thi4 family
     0.0019   18.3   0.0          2    8.5   0.0    2.4  2  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
     0.0022   17.1   1.8       0.11   11.6   0.1    2.3  2  FAD_binding_2  FAD binding domain
     0.0055   16.1   0.0        3.1    7.1   0.0    2.2  2  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
  ------ inclusion threshold ------
       0.02   13.6   1.2        0.1   11.3   0.2    2.0  2  HI0933_like    HI0933-like protein
      0.023   15.2   0.4        3.4    8.1   0.1    2.3  2  NAD_binding_7  Putative NAD(P)-binding
      0.053   12.8   0.2       0.48    9.6   0.0    2.0  2  FAD_binding_3  FAD binding domain
      0.063   12.9   0.3        0.4   10.2   0.0    2.1  2  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind
       0.11   11.7   0.3        1.2    8.4   0.1    2.0  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
       0.42    9.6   5.0        3.4    6.7   0.4    2.7  3  GIDA           Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.0   0.0     2e-67   1.9e-64       3     395 ..      32     412 ..      30     462 .. 0.89

  Alignments for each domain:
  == domain 1  score: 218.0 bits;  conditional E-value: 2e-67
    FMO-like   3 kvaviGaGvsGlasikccleegleptcfersddiGGlwrfkenveeGrasiyksvvsnsskemscfsdfplpedypnflhnsklleylklfakefdllk 101
                  v viGaG sGl+++k   e g+   c+er   +GG w++++     r+ +y s    ss+  + f+dfp+p+d+p++ h+s++l y++ +a++fdl +
  KIR60824.1  32 TVCVIGAGASGLTAVKNLREHGFGVDCYERETGVGGAWNWRH----DRSPVYASTHLISSRPFTQFPDFPMPDDWPDYPHHSQVLTYFERYADHFDLRQ 126
                 699***********************************9875....5899************************************************* PP

    FMO-like 102 yiqfkttvcsvkkrpdfstsGqwevvtekeg...kkesavfdavmvctGhhvnphlplesfpGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggd 197
                 +i f t v+ v+         +w+v+t++ g    ++++ + av+v  Gh   p+lp+  + G+e+f+G+++h+  yk+p+ ++gkrvlv+G Gn+g+d
  KIR60824.1 127 HIWFGTEVIRVEPV----DGDRWDVTTRSTGgygPERTSRYAAVVVANGHNWSPKLPR--YEGLEEFRGEIMHASSYKDPAQLRGKRVLVVGAGNTGCD 219
                 *********99754....4679*****9986222588999*****************7..89************************************* PP

    FMO-like 198 iavelsrtaeqvllstrsGswvlsrvsdsGypwdmllvtrfksllknilptalsnwlvekklnkrf.nhenygl.kpkkralakepvlndelparilaG 294
                 iave++++a +   str+G w   +    G p d +      sll+  +p ++ +wl++  l   + +   +gl kp +r+   +p+ n +l   +  G
  KIR60824.1 220 IAVEAAQQASHCWHSTRRGYWYAPKY-VLGRPADQVN----DSLLALRVPLRVRQWLYHWTLRLTVgDLTRFGLpKPDHRVYETHPIANSQLVYHVGHG 313
                 *********************98875.58*****885....6799999*************9987736789***77999******************** PP

    FMO-like 295 avkvkssvkeltetsaifedgtveedidvvifatGytfafpfleeslvkv.eknkvslykkvfpanlekptlaiiGliqplGsilptvelqarwavrvl 392
                 +++  ++v ++  +++ + dg   +  ++v+fatGy   f fl+  ++   e  +  l+ + f +   +ptla+ Gl+qp   i++ ++ q+   +r+l
  KIR60824.1 314 QITPVPDVARFHAKAVELTDGREID-PELVVFATGYLPRFEFLDPRVLGAdEAGRPRLWLNAFVP--GHPTLAVTGLVQPDSGIFTLSHWQTVLFARLL 409
                 ********************97665.589***************998876256788999999988..58******************999998888777 PP

    FMO-like 393 kGl 395
                    
  KIR60824.1 410 ALR 412
                 555 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0     2e-19   1.9e-16       2     196 ..      35     237 ..      34     247 .. 0.80
   2 !   12.1   0.0   8.8e-05     0.083     246     288 ..     328     369 ..     294     374 .. 0.85

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 2e-19
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkgnignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfelp.. 97 
                  +iGaG+ Gl+a  +l+++g+  +   E+++ +    +++ ++  +  s +     i   +++     p      ++++  ++l Y++++a++f+l+  
   KIR60824.1  35 VIGAGASGLTAVKNLREHGF-GVDCYERETGVGGAWNWRHDRSPVYASTH----LISSRPFTQFPDFPMPDDWPDYPHHSQVLTYFERYADHFDLRqh 127
                  8*******************.79999***9999999**999988775522....1222233333222322223479*******************644 PP

  Pyr_redox_3  98 iklfeeVesvkk.edegfevetske.......tyeAkkviiAtGefdkPnklnipGeek...lvkhyskvkefhkyagqkvvViGgknSavDaAlelv 184
                  i   +eV +v++ +++   v+t++        t +   v++A G    P++++++G e+     +h s +k++++++g++v+V+G++n+++D+A+e +
   KIR60824.1 128 IWFGTEVIRVEPvDGDRWDVTTRSTggygperTSRYAAVVVANGHNWSPKLPRYEGLEEfrgEIMHASSYKDPAQLRGKRVLVVGAGNTGCDIAVEAA 225
                  889*********66788*****9855455533344456******************997656789********************************9 PP

  Pyr_redox_3 185 rkgaeVtvvtrg 196
                  ++ ++    tr+
   KIR60824.1 226 QQASHCWHSTRR 237
                  998776666665 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 8.8e-05
  Pyr_redox_3 246 kvktedgkkvevkddvvlatGykpdlsflkkslfeldedgrpv 288
                   v+ +dg++++  + vv+atGy p ++fl+  ++  de grp 
   KIR60824.1 328 AVELTDGREID-PELVVFATGYLPRFEFLDPRVLGADEAGRPR 369
                  57788999976.5889***************999999999996 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   6.3e-17   5.9e-14       2     166 ..      32     229 ..      31     264 .. 0.73
   2 !    8.1   0.0    0.0014       1.3     216     247 ..     326     359 ..     305     370 .. 0.77

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 6.3e-17
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE............TTHCHHHCSHHHHCHHHHHHHHHHHHH.............................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxx.............................. RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve............legtclnggcllskallgvaedaeias.............................. 57 
                   v+viG+G+ Gl+a ++l+++g+ v ++e                   + ++++++ l +       s                              
   KIR60824.1  32 TVCVIGAGASGLTAVKNLREHGFGVDCYEretgvggawnwrH-----DRSPVYASTHLIS-------Srpftqfpdfpmpddwpdyphhsqvltyfer 117
                  59**************************65555444222221.....2223333333333.......1333444477777779999999999978887 PP

                  ..HHHHCHHHHCCCCHCCTCEEEEESC.EEEEETEEEC...TCEEEEEESEEEE---E..EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEE CS
                  ..xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx...xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ..evvkklnqgielllgeevvkidpgk.kkvklekkke...gdeekiaydklvlAtGs..sprdlgipGvaenvgklvrtldsaealklkllpkrivv 147
                    ++   l+q+i + ++  v++++p    +  ++++++   g e++  y ++v+A G   sp+++  +G++e  g+ ++++  +++ +l  + kr++v
   KIR60824.1 118 yaDH-FDLRQHIWFGTE--VIRVEPVDgDRWDVTTRSTggyGPERTSRYAAVVVANGHnwSPKLPRYEGLEEFRGEIMHASSYKDPAQL--RGKRVLV 210
                  7544.556666666666..888875552455554444478999**************76799999*****8888777444444444443..3477*** PP

                  ES-SHHHHHHHHHHHHHT- CS
                  xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 148 vGgGyiGvElAaalaklgk 166
                  vG+G++G+++A ++a+ ++
   KIR60824.1 211 VGAGNTGCDIAVEAAQQAS 229
                  *************998766 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0014
                  EE.EEETTSCEEEESEEEE-S-EEES-HHCS.HC CS
                  xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
  Pyr_redox_2 216 le.vvledgeeidadlvvvavGvrpstelle.ek 247
                  ++ v+l+dg+eid +lvv+a+G+ p+ e+l+ + 
   KIR60824.1 326 AKaVELTDGREIDPELVVFATGYLPRFEFLDpRV 359
                  3469********************9988885544 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0       0.1        95     189     212 ..      28      51 ..      19      62 .. 0.83
   2 !   36.1   0.0   4.1e-12   3.9e-09      99     216 ..     112     230 ..     103     240 .. 0.79
   3 ?   -0.1   0.0      0.42     4e+02     317     340 ..     325     348 ..     302     350 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.1
  K_oxygenase 189 lakkriaVvGsGqSaaeifedllr 212
                   +++++ V+G+G S+   +++l +
   KIR60824.1  28 DRGDTVCVIGAGASGLTAVKNLRE 51 
                  56789**********999988866 PP

  == domain 2  score: 36.1 bits;  conditional E-value: 4.1e-12
  K_oxygenase  99 edYlrWvasqle..eqvrfgeeveevepdeeeeeelltveskd..aegeeeelearnlvlgvG..tepkiPev..leklegkervvHsseylerkeel 188
                    Y +  a++++  +++ fg+ev +vep++ +   +++v++++    g e++ +  ++v++ G   +pk+P    le+++   +++H+s+y      +
   KIR60824.1 112 LTYFERYADHFDlrQHIWFGTEVIRVEPVDGD---RWDVTTRStgGYGPERTSRYAAVVVANGhnWSPKLPRYegLEEFR--GEIMHASSYKDPA--Q 202
                  568888899998656799************75...56666666235566667777789998885578****873355555..8********9987..8 PP

  K_oxygenase 189 lakkriaVvGsGqSaaeifedllrrqkk 216
                  l++kr++VvG+G ++ +i+ ++++++++
   KIR60824.1 203 LRGKRVLVVGAGNTGCDIAVEAAQQASH 230
                  ********************99998654 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.42
  K_oxygenase 317 tlrneesgeeetlevdavvlATGY 340
                  + +  e  + ++++ + vv+ATGY
   KIR60824.1 325 HAKAVELTDGREIDPELVVFATGY 348
                  5556666677889999******** PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   7.5e-10     7e-07       1      39 [.      35      73 ..      35     115 .. 0.84
   2 ?    1.7   0.1      0.33   3.1e+02       1      18 [.     210     227 ..     210     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 7.5e-10
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EEC CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasye 39
                   ++GaG+sGl+a   L+++gf v+++e+ +++GG +  ++
     KIR60824.1 35 VIGAGASGLTAVKNLREHGFGVDCYERETGVGGAWNWRH 73
                   8********************************886554 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.33
                    EE--SHHHHHHHHHHHCC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLaka 18 
                    +vGaG +G+ +A ++a++
     KIR60824.1 210 VVGAGNTGCDIAVEAAQQ 227
                    8********999998876 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.3   0.00017      0.16       2      36 ..      33      68 ..      32      73 .. 0.90
   2 !    7.7   0.0    0.0025       2.4     163     231 ..     128     198 ..     110     205 .. 0.69
   3 !    6.6   0.1    0.0052       4.9       1      21 [.     207     227 ..     207     235 .. 0.91
   4 ?   -2.8   0.0       3.9   3.7e+03     182     202 ..     329     348 ..     302     380 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSG CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgdiagsga 36
                v++iG+G  Gl++   L ++g  V  +e++  +g ga
  KIR60824.1 33 VCVIGAGASGLTAVKNLREHGfgVDCYERETGVG-GA 68
                9****************999999******98888.55 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0025
                 EEESECEEEEEEEETCEEEEE.EECTEEEE.....EEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECC CS
         DAO 163 ilegtevtgleeedgkvwgve.rttpgend.....aadavVnaaGawsd.llgllkeldlpispvrgqvlvlkpls 231
                 i +gtev ++e  dg+ w v  r t g        ++ avV+a+G+  + +l   ++    ++ +rg++++ +  +
  KIR60824.1 128 IWFGTEVIRVEPVDGDRWDVTtRST-GGYGpertsRYAAVVVANGHNWSpKL---PRY-EGLEEFRGEIMHASSYK 198
                 6689******9999999***65322.3331345544455******8733254...444.34588888888875544 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0052
                 EEEEECTSHHHHHHHHHHHHT CS
         DAO   1 dvviiGGGiiGlstAyeLarr 21 
                 +v+++G+G +G+ +A e+a++
  KIR60824.1 207 RVLVVGAGNTGCDIAVEAAQQ 227
                 59****************975 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 3.9
                 EEEECTEEE.EEEEEEEE--GG CS
         DAO 182 verttpgen.daadavVnaaGa 202
                 v + t+g++ d  + vV a+G 
  KIR60824.1 329 V-ELTDGREiDP-ELVVFATGY 348
                 2.2233444233.447777774 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00011       0.1       2      48 ..      35      77 ..      34      88 .. 0.86
   2 ?    2.7   0.0      0.12   1.1e+02     120     155 ..     130     172 ..     103     173 .. 0.64
   3 ?   -0.3   0.0         1   9.6e+02       2      20 ..     210     228 ..     209     238 .. 0.84
   4 ?    2.6   0.0      0.13   1.2e+02     132     155 ..     326     348 ..     301     349 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvwrtdqse 48
                   ++GaG++Gl+++++L ++      + ++++++ ++ g  + wr d+s+
     KIR60824.1 35 VIGAGASGLTAVKNLREH-----GFGVDCYEReTGVGGAWNWRHDRSP 77
                   9**************998.....6********6677778888888876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.12
  NAD_binding_9 120 hraevvdleeradg.qavll..adg....aslaadaVvLAlGh 155
                    + +ev+++e+ ++  + v++  ++g    ++ ++ aVv+A Gh
     KIR60824.1 130 FGTEVIRVEPVDGDrWDVTTrsTGGygpeRTSRYAAVVVANGH 172
                    368999999977551567774333355545679*********9 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1
  NAD_binding_9   2 ivGaGprGlavlerLlara 20 
                    +vGaG +G  ++ + +++a
     KIR60824.1 210 VVGAGNTGCDIAVEAAQQA 228
                    8********9999998886 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.13
  NAD_binding_9 132 dgqavlladgaslaadaVvLAlGh 155
                    +  av l+dg++++ + Vv A+G 
     KIR60824.1 326 A-KAVELTDGREIDPELVVFATGY 348
                    3.4799****************96 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.021        20      20      43 ..      32      55 ..      17      56 .. 0.89
   2 !   11.7   0.0   0.00012      0.12      13      36 ..     200     223 ..     188     227 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.021
                EEEEE--SHHHHHHHHHHHHHTTT CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 20 kvllvGaGglGsellknLalsGvg 43
                +v+++GaG+ G  ++knL   G+g
  KIR60824.1 32 TVCVIGAGASGLTAVKNLREHGFG 55
                799***************999987 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00012
                 HHHHHTSEEEEE--SHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  13 qekLrdskvllvGaGglGsellkn 36 
                  ++Lr ++vl+vGaG  G+ ++++
  KIR60824.1 200 PAQLRGKRVLVVGAGNTGCDIAVE 223
                 5689***************99976 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.4    0.0087       8.2       2      32 ..      33      63 ..      32      69 .. 0.88
   2 !   10.9   0.1   0.00056      0.53       1      20 [.     207     226 ..     207     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0087
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversd 32
                v v+G+G +gl + ++l+e+g  V + er+ 
  KIR60824.1 33 VCVIGAGASGLTAVKNLREHGFGVDCYERET 63
                78*******************9998888875 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00056
                 EEEEECSSHHHHHHHHHHHH CS
   Pyr_redox   1 kvvvvGgGyiglElAgalae 20 
                 +v+vvG+G++g++ A ++a+
  KIR60824.1 207 RVLVVGAGNTGCDIAVEAAQ 226
                 79*************98876 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   2.2e-05      0.02      20      58 ..      33      69 ..      28      72 .. 0.90
   2 ?    1.0   0.0      0.22     2e+02       9      38 ..     197     226 ..     190     230 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-05
                EEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTT CS
        Thi4 20 vvivGaGssGLtaayylakkpdlkvailersvspGGGaw 58
                v ++GaG+sGLta + l ++ ++ v   er+  +GG  w
  KIR60824.1 33 VCVIGAGASGLTAVKNLREH-GFGVDCYERETGVGGA-W 69
                889**************999.**********999874.4 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.22
                 HHHHHHHTEEEEEEE--SHHHHHHHHHHHH CS
        Thi4   9 fedllkyaesDvvivGaGssGLtaayylak 38 
                 ++d  ++    v++vGaG +G   a   a+
  KIR60824.1 197 YKDPAQLRGKRVLVVGAGNTGCDIAVEAAQ 226
                 556666667789*********998887776 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0054       5.1      12      36 ..      30      54 ..      23      62 .. 0.89
   2 !    8.5   0.0    0.0021         2       9      28 ..     202     221 ..     194     230 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0054
                  T-EEEEES-SHHHHHHHHHHHCCT- CS
  Shikimate_DH 12 ekkvlliGaGemaelvakhLlakgv 36
                  + +v++iGaG  +  ++k+L ++g+
    KIR60824.1 30 GDTVCVIGAGASGLTAVKNLREHGF 54
                  578*****************99986 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0021
                   ..TT-EEEEES-SHHHHHHH CS
  Shikimate_DH   9 slkekkvlliGaGemaelva 28 
                   +l++k+vl++GaG+++  +a
    KIR60824.1 202 QLRGKRVLVVGAGNTGCDIA 221
                   7999***********99887 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   0.00011      0.11       2      40 ..      33      71 ..      32      73 .. 0.92
   2 ?    4.8   0.2     0.013        12       2      22 ..     208     228 ..     207     232 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggataw 40
                   v ViG+G++GL+A  +++e+G  v + e e  +gga  w
     KIR60824.1 33 VCVIGAGASGLTAVKNLREHGFGVDCYERETGVGGAWNW 71
                   78****************************999998776 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.013
                    EEEE--SHHHHHHHHHHHHTT CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaG 22 
                    v+V+G+G  G+  A+eaa++ 
     KIR60824.1 208 VLVVGAGNTGCDIAVEAAQQA 228
                    9*****************986 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0047       4.4      35      68 ..      29      62 ..      18      69 .. 0.88
   2 !    7.1   0.0    0.0033       3.1      28      56 ..     197     225 ..     181     237 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0047
                  TTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSS CS
  2-Hacid_dh_C 35 sgktvGiiGlGrIGqavakrlkafgmkviaydrs 68
                  +g tv++iG+G+ G ++ k l++ g+ v +y+r 
    KIR60824.1 29 RGDTVCVIGAGASGLTAVKNLREHGFGVDCYERE 62
                  799*******************999999888775 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0033
                   CGSBS-GTTSEEEEES-SHHHHHHHHHHH CS
  2-Hacid_dh_C  28 allgkelsgktvGiiGlGrIGqavakrlk 56 
                        +l+gk+v ++G+G+ G  +a  ++
    KIR60824.1 197 YKDPAQLRGKRVLVVGAGNTGCDIAVEAA 225
                   455679***************99997766 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00011       0.1       2      36 ..      32      66 ..      31      67 .. 0.91
   2 ?    1.0   0.1      0.14   1.3e+02       2      23 ..     207     228 ..     206     232 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 +v viG+Ga+Gl a  +++++g  V  +e+++ +g
   KIR60824.1 32 TVCVIGAGASGLTAVKNLREHGFGVDCYERETGVG 66
                 589***********************999987765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.14
                  SEEEE--SHHHHHHHHHHHHTT CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrg 23 
                  +v+v+G+G  G   A++aa++ 
   KIR60824.1 207 RVLVVGAGNTGCDIAVEAAQQA 228
                  699************9999875 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.036        34       6      33 ..      29      56 ..      26      81 .. 0.88
   2 ?    8.1   0.1    0.0036       3.4       4      20 ..     202     218 ..     201     230 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.036
  NAD_binding_7  6 kgkkvlvvGgGevAarkvrklleagakv 33
                   +g +v+v+G+G  +++ v++l e g  v
     KIR60824.1 29 RGDTVCVIGAGASGLTAVKNLREHGFGV 56
                   5789****************99988666 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0036
  NAD_binding_7   4 dlkgkkvlvvGgGevAa 20 
                    +l+gk+vlvvG+G+ + 
     KIR60824.1 202 QLRGKRVLVVGAGNTGC 218
                    89***********9886 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0005      0.48       3      32 ..      32      61 ..      31      65 .. 0.87
   2 ?    0.8   0.0      0.24   2.3e+02       3      18 ..     207     222 ..     206     231 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0005
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   +V+++GaG +Gl++ + L+e+G  v + e+
     KIR60824.1 32 TVCVIGAGASGLTAVKNLREHGFGVDCYER 61
                   59********************88766665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.24
                    EEEEE--SHHHHHHHH CS
  FAD_binding_3   3 dVlIVGaGpaGlmlal 18 
                     Vl+VGaG +G   a 
     KIR60824.1 207 RVLVVGAGNTGCDIAV 222
                    59*********87665 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00042       0.4       4      32 ..      30      58 ..      29      73 .. 0.87
   2 ?   -0.1   0.1      0.64     6e+02       2      20 ..     203     221 ..     202     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00042
                TS-EEEES-SHHHHHHHHHHHHTT--EEE CS
        IlvN  4 gkkiaviGyGsqGhaqalnlrdsgldvvv 32
                g +++viG G+ G +  +nlr+ g+ v  
  KIR60824.1 30 GDTVCVIGAGASGLTAVKNLREHGFGVDC 58
                579*********************99865 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.64
                 HHTS-EEEES-SHHHHHHH CS
        IlvN   2 lkgkkiaviGyGsqGhaqa 20 
                 l+gk++ v+G G+ G   a
  KIR60824.1 203 LRGKRVLVVGAGNTGCDIA 221
                 899*********9997655 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0012       1.2      30      59 ..      32      61 ..      27      66 .. 0.88
   2 ?    1.0   0.0      0.24   2.2e+02      29      47 ..     206     224 ..     186     231 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0012
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEES CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDv 59
                 +v viG+G  Gl A+++ ++ g  V  ++ 
   KIR60824.1 32 TVCVIGAGASGLTAVKNLREHGFGVDCYER 61
                 699**************9999999888776 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.24
                  -EEEEESTSHHHHHHHHHH CS
  AlaDh_PNT_C  29 akvlviGgGvaGlqAiata 47 
                   +vlv+G+G  G   +  a
   KIR60824.1 206 KRVLVVGAGNTGCDIAVEA 224
                  589******9998633333 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.9     0.046        43       2      26 ..      33      57 ..      32      68 .. 0.83
   2 ?    6.7   0.4    0.0036       3.4       2      21 ..     208     227 ..     207     232 .. 0.90
   3 ?   -0.8   0.0      0.65   6.1e+02     128     149 ..     326     347 ..     310     358 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.046
                EEEE-SSHHHHHHHHHHHHTT--EE CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvl 26
                v ViG+G +G+ A  ++ + G+ v 
  KIR60824.1 33 VCVIGAGASGLTAVKNLREHGFGVD 57
                99***********999888888776 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0036
                 EEEE-SSHHHHHHHHHHHHT CS
        GIDA   2 viViGgGhAGceAAlaaarl 21 
                 v V+G+G  Gc  A++aa+ 
  KIR60824.1 208 VLVVGAGNTGCDIAVEAAQQ 227
                 89***************997 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.65
                 EEEEEETTS-EEEECEEEE--T CS
        GIDA 128 vkgvvtedgetikakavviatG 149
                  k+v ++dg++i  + vv atG
  KIR60824.1 326 AKAVELTDGREIDPELVVFATG 347
                 678999***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 3727.47
//
Query:       KIR60825.1  [L=275]
Description: hypothetical protein TK50_23555 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2151.07
//
Query:       KIR60826.1  [L=82]
Description: hypothetical protein TK50_23565 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.74   10.4   4.4       0.82   10.2   4.4    1.1  1  Alpha_GJ  Alphavirus glycoprotein J


Domain annotation for each model (and alignments):
>> Alpha_GJ  Alphavirus glycoprotein J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.4   4.6e-05      0.82      10      80 ..       8      75 ..       3      80 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 4.6e-05
    Alpha_GJ 10 aWvaalvtdltpkaalatgttatvgaanaaavanatganatsaaaastiaatvgapptdstvaaetPgpfl 80
                aW     t  +p  ++  ++  t +a +  ++ ++ + + t+++ +st ++t+ + ptd+t+ +  P + +
  KIR60826.1  8 AWTDPRGTLWAPGDTVDVDAV-TLAALEEQGMVDTPDGQGTAPDQGSTKTTTT-TKPTDPTKIGPGPSA-P 75
                566666666666666666665.667777789999999***********99865.556778676655543.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 600.46
//
Query:       KIR60827.1  [L=230]
Description: Crp/Fnr family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-21   75.5   0.0    4.1e-21   74.8   0.0    1.4  1  cNMP_binding  Cyclic nucleotide-binding domain
    1.7e-16   60.0   0.4    3.1e-16   59.1   0.4    1.5  1  HTH_Crp_2     Crp-like helix-turn-helix domain
    0.00026   20.8   0.6      0.001   18.9   0.1    2.3  3  MarR_2        MarR family
     0.0056   16.3   0.1      0.014   15.0   0.1    1.7  1  GntR          Bacterial regulatory proteins, gntR family
  ------ inclusion threshold ------
      0.061   13.9   0.0       0.17   12.4   0.0    1.7  2  Phage_rep_O   Bacteriophage replication protein O


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   1.2e-24   4.1e-21       2      89 .]      36     123 ..      35     123 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 1.2e-24
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH- CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellqqd 89 
                   r +++g+ +f ++dp++sl ++++G v+v+r+++ g++ vl v++p d++Ge++ll+ ++r+a+++A++d+  lal+r +f+el+ ++
    KIR60827.1  36 RTYRKGQLLFVENDPGESLIVLRRGAVAVFRTAPTGERAVLSVIRPPDVLGEVSLLDASTRSASAEAIEDCAALALSRPAFMELVHSN 123
                   89*******************************************************9**************************9875 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.4   8.8e-20   3.1e-16       1      67 [.     155     223 ..     155     224 .. 0.92

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 8.8e-20
                 HHHHHHHHHHHCTTTC.EEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ETEEEEES-HHHHHH CS
   HTH_Crp_2   1 qRlArfLlrlaeragg.eielpltqeelAsmlGltretvsrilseLkreglis.rgrririldleaLra 67 
                 +R+A++L+rla ++++  i++ l+q +lA+m G +r++v+++++ +  +g+++  grri+++d++aLr+
  KIR60827.1 155 GRVAKTLVRLAGESQApMITIELNQSQLAEMAGGSRQSVNQAIGSFASRGWLRtEGRRIVVTDVAALRR 223
                 6*********88867789***********************************55666*********98 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.9     7e+03      28      39 ..     106     117 ..      85     122 .. 0.70
   2 ?   -2.5   0.0       1.4   5.1e+03      49      55 ..     136     142 ..     118     147 .. 0.69
   3 !   18.9   0.1   2.8e-07     0.001      20      54 ..     170     209 ..     151     223 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.9
                 HHHHTSSHHHHH CS
      MarR_2  28 arrlglsksavs 39 
                 +++l ls++a  
  KIR60827.1 106 CAALALSRPAFM 117
                 456777777655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.4
                 TSEEEEE CS
      MarR_2  49 GLverrp 55 
                 GL++r +
  KIR60827.1 136 GLIRRLT 142
                 5555554 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 2.8e-07
                 S.....EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2  20 r.....dltvgelarrlglsksavsrilkrLvaaGLverr 54 
                       +l++++la+  g s+++v++++  + ++G+++++
  KIR60827.1 170 ApmitiELNQSQLAEMAGGSRQSVNQAIGSFASRGWLRTE 209
                 36777789*****************************998 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   3.9e-06     0.014      26      60 ..     178     212 ..     176     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.9e-06
                 -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTC CS
        GntR  26 sereLaaefgVsrttvReALrrLeaeglverrqgr 60 
                  +++La++ g sr++v++A+   +++g++  + +r
  KIR60827.1 178 NQSQLAEMAGGSRQSVNQAIGSFASRGWLRTEGRR 212
                 5789*************************998775 PP

>> Phage_rep_O  Bacteriophage replication protein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         5   1.8e+04      27      38 ..     121     132 ..     113     133 .. 0.61
   2 ?   12.4   0.0   4.9e-05      0.17      49      87 ..     176     214 ..     169     219 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 5
  Phage_rep_O  27 krqlkillavir 38 
                  + + +il+av+r
   KIR60827.1 121 HSNPRILDAVMR 132
                  555566666666 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 4.9e-05
  Phage_rep_O  49 wisnsqlveltgisrtkvskalkeLirekviikegrkvg 87 
                   +++sql+e++g sr++v++a+ ++ +++ + +egr++ 
   KIR60827.1 176 ELNQSQLAEMAGGSRQSVNQAIGSFASRGWLRTEGRRIV 214
                  5789*******************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1558.91
//
Query:       KIR60828.1  [L=165]
Description: hypothetical protein TK50_23575 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-20   72.5   0.0    5.4e-20   72.0   0.0    1.2  1  DUF5051   3' exoribonuclease, RNase T-like


Domain annotation for each model (and alignments):
>> DUF5051  3' exoribonuclease, RNase T-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0     3e-24   5.4e-20       2     165 ..       4     162 ..       3     163 .. 0.78

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 3e-24
     DUF5051   2 klmiDiEtlgneetaelvsIGaVffpetG.eFyaeidlesdeeagidaetieWWlkqskearaellkdtqeakslkdalqaleeFl........ekslk 91 
                 ++++D E+++   t++lvsIG+V  +e+G eFya+++  +d      + ++ W ++   +   +  +    + s ++++ +l +Fl         ++l+
  KIR60828.1   4 RYFYDCEFIEDGRTVDLVSIGVV--DENGrEFYAVSTE-FDD-----SRAVPWVRRNVLDRLPSPADRA--WRSRERIRDDLYDFLmepirgrpGEQLE 92 
                 79*******888***********..*********9998.553.....4567776666666666666555..***********************679** PP

     DUF5051  92 vwangasfDlviLraafel......lipwkywndrdvrtlvalapelekgeekkreipfe...gvkHnALaDAkhqakavsai 165
                 +wa++a++D+v+L+++         +ip      r+ + l++l ++       + + p       +H+AL+DA+h+   ++a+
  KIR60828.1  93 LWAWYAAYDHVVLAQLWGSmpglprEIP------RFTKELRQLWDD-------RGRPPLPnadAARHDALVDARHNLARWRAM 162
                 ****************555665544333......555555665544.......3333332234789**********9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1156.98
//
Query:       KIR60829.1  [L=167]
Description: pyridoxamine 5'-phosphate oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-47  160.2   0.0    2.8e-47  160.0   0.0    1.0  1  Pyrid_ox_like   Pyridoxamine 5'-phosphate oxidase like
    7.9e-16   58.0   0.0    1.2e-15   57.4   0.0    1.3  1  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> Pyrid_ox_like  Pyridoxamine 5'-phosphate oxidase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   0.0   3.1e-51   2.8e-47       1     147 [.      10     156 ..      10     158 .. 0.98

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 3.1e-51
  Pyrid_ox_like   1 eavkklkelvkdiktamLttteadgklksrPMatqkveedgdlwfltkkdsdkvkeirkdsqvnlafsdeskkkyvsvsGtaevvedrakieelWs 96 
                    +a ++++elv+ ++++mLtt+  dg+l+srPM  q++e+dgdlwf++  ds kv+++r +++vn+af+d+ ++ +vsv+Gta+  +dr  +e lW 
     KIR60829.1  10 DARSRVTELVRAARICMLTTIGLDGRLVSRPMGLQEAEFDGDLWFFAYADSAKVRQLRVNPEVNVAFADQRNHAWVSVAGTAQEGYDRRHAERLWH 105
                    67899******************************************************************************************* PP

  Pyrid_ox_like  97 pvvkawfpegkddpnltlikvtpeeaeyWdsksgklvsllkmakaavtgkk 147
                    p++k+wfp g d+p ltlikv++ +aeyWds++g +v ll +a+aa tgk 
     KIR60829.1 106 PLLKTWFPAGLDTPGLTLIKVHAGSAEYWDSPGGAVVNLLGLARAAATGKP 156
                    ************************************************985 PP

>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   1.4e-19   1.2e-15       6      82 ..      16      92 ..      11      97 .. 0.92

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 1.4e-19
                    HHHHHHSSEEEEEEEETTSEEEEEEEE..EEEETTTTEEEEEEETTSHHHHHHHHH-EEEEEEEETTGSEEEEEEEEEE CS
  Putative_PNPOx  6 reflaeskavvlATvdedGrPnvspvl..lkagdgrdgivfatnadsrklrnleenprvallflddelgrgvrieGtae 82
                     e+++++++++l+T++ dGr  ++p++   +++dg+  ++f+  ads+k+r+l+ np v++ f+d  +  +v++ Gta+
      KIR60829.1 16 TELVRAARICMLTTIGLDGRLVSRPMGlqEAEFDGD--LWFFAYADSAKVRQLRVNPEVNVAFADQRNHAWVSVAGTAQ 92
                    68999**********************555677777..****************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1250.78
//
Query:       KIR60830.1  [L=272]
Description: pyrroline-5-carboxylate reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-38  130.5   0.8    2.4e-38  130.5   0.8    2.1  2  P5CR_dimer       Pyrroline-5-carboxylate reductase dimerisati
    2.6e-19   69.6   0.1    7.1e-19   68.2   0.1    1.8  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    4.1e-05   23.3   0.1    0.00011   21.9   0.1    1.7  1  ApbA             Ketopantoate reductase PanE/ApbA
    7.5e-05   22.8   0.0     0.0002   21.4   0.0    1.7  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
     0.0016   18.6   0.0     0.0069   16.6   0.0    1.9  2  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
     0.0043   16.6   0.0     0.0072   15.9   0.0    1.5  1  IlvN             Acetohydroxy acid isomeroreductase, NADPH-bi
  ------ inclusion threshold ------
      0.021   14.2   0.0      0.034   13.5   0.0    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.036   14.9   0.0       0.11   13.4   0.0    1.8  2  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
      0.045   14.3   1.2        1.2    9.7   0.1    2.9  3  CoA_binding_2    CoA binding domain
      0.082   13.2   0.0        0.2   11.9   0.0    1.7  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> P5CR_dimer  Pyrroline-5-carboxylate reductase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.31   5.6e+02      13      43 ..     122     152 ..     114     160 .. 0.75
   2 !  130.5   0.8   1.4e-41   2.4e-38       1     103 []     163     267 ..     163     267 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.31
                 THHHHHHHHHHHHHHHHHHTT--HHHHHHHH CS
  P5CR_dimer  13 sgpAyvflliealadagvklGlsreeArela 43 
                  +pA v  ++ a+  ++ + G + + A+e+ 
  KIR60830.1 122 NTPALVDQAMSAISAGAHATGEHLALAEEMF 152
                 5788888888888888888888888887775 PP

  == domain 2  score: 130.5 bits;  conditional E-value: 1.4e-41
                 CCHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHCHS..HHHHHHHH--TTSHHHHHHHHHHHTTHHHHHHHHHHHHH CS
  P5CR_dimer   1 EkqldavtalsGsgpAyvflliealadagvklGlsreeArelaaqtvaGaaklllese..paelrdkvtspgGtTiaglkeleegglraavieaveaaa 97 
                 E+q davtalsGsgpAy++ll+ea++dag+ lGl+r++A+el++qt++G+a +l++s+  p +lr++vtsp+GtTi +++ele++g+raa+ +a+eaa 
  KIR60830.1 163 ESQQDAVTALSGSGPAYFYLLVEAMVDAGILLGLPRQVAHELIVQTAIGSAVMLRDSGehPVKLREAVTSPAGTTISAIRELENHGVRAAMLAALEAAR 261
                 899***************************************************955569*************************************** PP

                 HHHHHH CS
  P5CR_dimer  98 krskel 103
                 +r++el
  KIR60830.1 262 DRAREL 267
                 ****97 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.1     4e-22   7.1e-19       1      97 []       7     100 ..       7     100 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 4e-22
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEEEESS CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlselakdalkgklvisvla 96 
                    ++++iGaG++ge ++sgll++g +   ++ a+ r p +aeela ++gv+v    n +a+ eadv+ +avkp+d++++l+e+ ++  ++klvis +a
     KIR60830.1   7 TVAVIGAGKIGELMLSGLLRSGWPVGRLL-ATARRPIRAEELATRYGVRVVD--NLTAVGEADVLAIAVKPQDAAALLDEIGPKVPADKLVISLCA 99 
                    58***************************.99**************977766..****************************************99 PP

                    S CS
  F420_oxidored  97 g 97 
                    g
     KIR60830.1 100 G 100
                    7 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   6.1e-08   0.00011       1     104 [.       8     100 ..       8     104 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 6.1e-08
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCEEEE CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealeeikplldpntvvl 99 
                 +a++GaG iG l+   L + g++v  +l ++    ++ + l  t++g    +r+  +l+a+     +++d++ ++vK +++++ l+ei p +  +  v+
  KIR60830.1   8 VAVIGAGKIGELMLSGLLRSGWPVGRLLATA-RRPIRAEEL-ATRYG----VRVVDNLTAV-----GEADVLAIAVKPQDAAALLDEIGPKVPADKLVI 95 
                 69*********************99888888.455888888.44555....4666677777.....99****************************999 PP

                 EESSS CS
        ApbA 100 llqNG 104
                 +l  G
  KIR60830.1  96 SLCAG 100
                 98666 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.1e-07    0.0002      12      84 ..       5      73 ..       2      85 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.1e-07
                  T-EEEEES-SHHHHHHHHHHHCCT..-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SS CS
  Shikimate_DH 12 ekkvlliGaGemaelvakhLlakg..vkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisata 84
                  +++v +iGaG+++el+++ Ll++g  v +++ + R   ra+ela++++        +++l +++ eadv+ +a++
    KIR60830.1  5 DHTVAVIGAGKIGELMLSGLLRSGwpVGRLLATARRPIRAEELATRYGVR-----VVDNL-TAVGEADVLAIAVK 73
                  6799******************9744789******************444.....44444.47788888888776 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.9e-06    0.0069       2      88 ..       8      96 ..       7     103 .. 0.83
   2 ?   -1.0   0.0      0.96   1.7e+03      25      71 ..     117     163 ..     106     177 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.9e-06
                   EEEE--SHHHHHHHHHHHHTT-EE...EEE-SSHHHHHHHHHTT.EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE CS
  NAD_binding_2  2 igfiGlGvMGsnmalnllkagykv...avynrtkekveelvaeg.akaaesieelvasldvvitmvkagkavdeviegllealkkgdilid 88
                   +++iG G++G+ m + ll++g+ v    +  r++ ++eel+++  +++++++  +v ++dv  + vk  ++  ++++++ +++ +++++i 
     KIR60830.1  8 VAVIGAGKIGELMLSGLLRSGWPVgrlLATARRPIRAEELATRYgVRVVDNL-TAVGEADVLAIAVKP-QDAAALLDEIGPKVPADKLVIS 96
                   89********************884335778999999999999626666655.599999*99999986.6778999999999999999986 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.96
                    EEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHH CS
  NAD_binding_2  25 vavynrtkekveelvaegakaaesieelvasldvvitmvkagkavde 71 
                    v v+  t++ v++++++   +a+   e +a ++ ++t + a+  v e
     KIR60830.1 117 VRVMTNTPALVDQAMSAISAGAHATGEHLALAEEMFTPLGATVRVPE 163
                    66777777777777777666666666666666666666666655555 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     4e-06    0.0072       4      99 ..       5     103 ..       2     138 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4e-06
                 TS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-...HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-HHHHHHHHHHHTGGG--TT-.EEEESSSHH CS
        IlvN   4 gkkiaviGyGsqGhaqalnlrdsgldvvvglregs...ksvkkAkeegfevltvaeavkkadvvmiliPDelqkevyeeeiepnlkegk.alafahGfn 98 
                 ++++aviG G  G+     l  sg  v   l + +   +  + A++ g++v++   av +adv++i +  +  ++++ +ei p++ ++k +++   G+ 
  KIR60830.1   5 DHTVAVIGAGKIGELMLSGLLRSGWPVGRLLATARrpiRAEELATRYGVRVVDNLTAVGEADVLAIAVKPQDAAALL-DEIGPKVPADKlVISLCAGLP 102
                 789*********************9885444444322279999**********************999888888887.889988887773555666665 PP

                 H CS
        IlvN  99 i 99 
                  
  KIR60830.1 103 T 103
                 5 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.9e-05     0.034      35     102 ..       4      75 ..       1      81 [. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.9e-05
                   TTSEEEEES-SHHHHHHHHHHHHTT-...EEEEESSSHHHHH.CHHHHTCEECSHHHHHHH-SEEEE-S--S CS
  2-Hacid_dh_C  35 sgktvGiiGlGrIGqavakrlkafgm...kviaydrskkkee.eeeelgvelvsleellaesDivslhlplt 102
                    + tv++iG+G+IG+ +   l   g    +++a+ r++ + e  + ++gv++v+  +++ e+D++ +++  +
    KIR60830.1   4 GDHTVAVIGAGKIGELMLSGLLRSGWpvgRLLATARRPIRAEeLATRYGVRVVDNLTAVGEADVLAIAVKPQ 75 
                   678**************999988877335557777777666646788999***************9998765 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     6e-05      0.11       3      74 ..       8      76 ..       6      86 .. 0.81
   2 ?   -2.6   0.0       5.1   9.2e+03      45      56 ..     135     146 ..     113     179 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6e-05
                  EEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGG CS
  GFO_IDH_MocA  3 vaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngt 74
                  va+iGaGkig+  l  l +s        +  +++ rae++a ++gv ++++l ++ +   +d++ +a+ ++ 
    KIR60830.1  8 VAVIGAGKIGELMLSGLLRSGWPVGRLLATARRPIRAEELATRYGVRVVDNLTAVGE---ADVLAIAVKPQD 76
                  89************888888444444446778889*************999988887...889999888865 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.1
                   HTTHEEESSHHH CS
  GFO_IDH_MocA  45 sfgveaysdlee 56 
                   s g++a  ++ +
    KIR60830.1 135 SAGAHATGEHLA 146
                   333333333333 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00066       1.2       2      76 ..       7      85 ..       6      97 .. 0.74
   2 ?   -1.8   0.0       2.4   4.2e+03      58      79 ..     116     137 ..     107     142 .. 0.57
   3 ?    2.1   0.0      0.14   2.6e+02      62      97 ..     231     267 ..     211     272 .] 0.75

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00066
                   -EEEET--S-TTSHHHHHHHHHHHHT--EEEESSS-.........SEETTEES----T....T--EEEE-S-HHHHGGGHHHHH CS
  CoA_binding_2  2 tiaVvGasdnpgkfgykvlryllehglpvvpVnpke.........eeilgekvyaslaedpepvdlvdvftppeatpeivkeal 76
                   t+aV+G     gk g  +l+ ll++g+pv     ++          +  g++v+ +l+ ++++ d++ ++++p++++++++e++
     KIR60830.1  7 TVAVIG----AGKIGELMLSGLLRSGWPVGRLLATArrpiraeelATRYGVRVVDNLT-AVGEADVLAIAVKPQDAAALLDEIG 85
                   789999....789999999999999977765544445455552233344555777777.589********************96 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.4
                    EEEE-S-HHHHGGGHHHHHHH- CS
  CoA_binding_2  58 lvdvftppeatpeivkealalg 79 
                    +v v+t+  a+++ + +a+++g
     KIR60830.1 116 VVRVMTNTPALVDQAMSAISAG 137
                    5555555555555444444445 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.14
                    -S-HHHHGGGHHHHHHH--SEEEE-TT.---HHHHHH CS
  CoA_binding_2  62 ftppeatpeivkealalgakavwlqpg.sedeeaael 97 
                      p+ +t + ++e++  g++a++l +  +  + a el
     KIR60830.1 231 TSPAGTTISAIRELENHGVRAAMLAALeAARDRAREL 267
                    5577789999********9999986552444444444 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011       0.2       1      75 [.       8      96 ..       8     107 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                     EEEE--SHHHHHHHHHHHCTCCT-G.EEEEEESSHHHHHHHHCHH...........TTTCEEEEE--TTTHHHHHHHHHTTS...SEEEE CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvda.eitvadrskeklealaaka...........lgvrfeaialdaenyeavLaallkeg...dlvvn 75
                     v +iGaG++G+ ++  l+r++     ++    r   ++e+la               + ++ aia+ +++ +a+L+++  +    +lv++
       KIR60830.1  8 VAVIGAGKIGELMLSGLLRSGWP-VgRLLATARRPIRAEELATRYgvrvvdnltavGEADVLAIAVKPQDAAALLDEIGPKVpadKLVIS 96
                     689****************9854.45***********99998654666666666555555666666666666655554333344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2160.48
//
Query:       KIR60831.1  [L=312]
Description: aminoglycoside phosphotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-34  119.4   8.7    3.4e-34  118.8   8.7    1.1  1  APH       Phosphotransferase enzyme family
     0.0054   15.6   0.0     0.0077   15.1   0.0    1.1  1  DUF1679   Protein of unknown function (DUF1679)


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.8   8.7   3.8e-38   3.4e-34       6     237 ..      47     270 ..      42     273 .. 0.86

  Alignments for each domain:
  == domain 1  score: 118.8 bits;  conditional E-value: 3.8e-38
                 --.SSCEEEEEEETT--EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHC CS
         APH   6 sggasnrtylvttpagryvlrrnpparaaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgefla 103
                  gg++n+t++++t    + +r++++ ++ae +++e+++l +La + + pvP +la +  +e++++ + ++ +++g++++  +  a+  +++ +l+ f  
  KIR60831.1  47 DGGWDNWTFRLGT---GMSVRLPSAVEYAEAVAKEHRWLPVLAPRLPlPVPTPLAKGGPGEGYPYAWSVYRWLDGETARA-DRIADPVRFALDLAGFVV 141
                 478**********...79*************************88777*******999**********************.7788999*********** PP

                 CHHCH.-STTTB-SHHCHTCC.HHHHHHCHHHCCCGCCTCC.HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEE CS
         APH 104 alhqvdpaalpladflaqdle.llrqlesatarllaselld.lleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedaglgp 200
                 al+ vd a+ p ++++ +++   lr  +  + r l ++ +  ++  + e +++al+a+++  +++++ HgDl  gNll+d  dg++ ++iDf+++g+g+
  KIR60831.1 142 ALQGVDVADGPRPGRHNWYRGgTLRTYDGLADRALTALDGRiDVGLAGEVWRRALDARWD--GAERWFHGDLAQGNLLLD--DGHLAAIIDFGTCGVGD 236
                 ********9****99988777444444444445555555556666666656689999999..8*****************..9**************** PP

                 CCHHHHCCHHHCSCHCCCHCHHHHHHHHCS-HHHHCC CS
         APH 201 plyDlavllrswtseldpeflaallrayeqeaglarl 237
                 p +Dla++++ +t + + +f+++l+      a +ar 
  KIR60831.1 237 PSCDLAIAWTLLTADGRRAFRERLAVDD---ATWARG 270
                 *********7799999999999998888...455544 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.6e-07    0.0077     271     330 ..     207     260 ..     203     262 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.6e-07
     DUF1679 271 vhgDlwsaNiLfseeeegklklkkviDyQlvslgnpaeDlvrlllscLsgedRrarkeel 330
                  hgDl + N+L    ++    l ++iD+ +  +g p+ Dl+ +  + L++  Rra  e+l
  KIR60831.1 207 FHGDLAQGNLLLDD-GH----LAAIIDFGTCGVGDPSCDLA-IAWTLLTADGRRAFRERL 260
                 7**********988.56....89*****************8.678899999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2137.87
//
Query:       KIR60832.1  [L=97]
Description: hypothetical protein TK50_23610 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 709.21
//
Query:       KIR60833.1  [L=189]
Description: hypothetical protein TK50_23620 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-06   28.6   0.9    1.1e-06   28.6   0.9    2.3  2  AbiEi_4   Transcriptional regulator, AbiEi antitoxin
  ------ inclusion threshold ------
       0.17   12.0   0.2       0.27   11.4   0.2    1.3  1  DpnI_C    Dam-replacing HTH domain


Domain annotation for each model (and alignments):
>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.9   1.3e-10   1.1e-06      13      48 ..       7      42 ..       2      43 .. 0.93
   2 ?   -2.4   0.1       0.6   5.4e+03      27      35 ..     151     159 ..     148     160 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.3e-10
     AbiEi_4 13 lfttreleaaGispsalrrLvrkGwLvrlrrGvYal 48
                +f+++++ +aG+++  l+rL+++G+++r ++G+Y++
  KIR60833.1  7 TFSYSQALEAGLTRWRLYRLRDQGLIERMGHGLYRR 42
                799***********77******************96 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.6
     AbiEi_4  27 salrrLvrk 35 
                  alrr++r+
  KIR60833.1 151 PALRRWLRR 159
                 578888875 PP

>> DpnI_C  Dam-replacing HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2     3e-05      0.27      49      70 .]      21      42 ..      16      42 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3e-05
                HHHHHHHHTTSEEE-STTEEEE CS
      DpnI_C 49 qqLqvlRDkglieFlgrGkYkk 70
                  L  lRD+glie +g+G Y++
  KIR60833.1 21 WRLYRLRDQGLIERMGHGLYRR 42
                56889***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1355.80
//
Query:       KIR60834.1  [L=116]
Description: hypothetical protein TK50_23630 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-31  108.2   0.0    4.7e-31  108.1   0.0    1.0  1  DUF2203   Uncharacterized conserved protein (DUF2203)


Domain annotation for each model (and alignments):
>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   0.0   2.6e-35   4.7e-31       2     122 .]       1     116 []       1     116 [] 0.98

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 2.6e-35
     DUF2203   2 lFtleeAnalLpllkelleelralrkeleeleeeleeakaeaekseaaeleaeleeleaeieelveeieelGvevkdleaglvDFpakldgeevllCWk 100
                 +Ftl++A++l+ +l+++++el++lr++l+el+++l++   +          ae++ lea+++ +v+e++e+ ++vk+++++l+DFp+++ g++vl+CW 
  KIR60834.1   1 MFTLAQARHLVATLQPRIDELIRLRADLAELRADLADGGLS-----PLGGLAEVKGLEARLHGVVDELHEHDIQVKGIAPVLLDFPGERGGRPVLWCWL 94 
                 6*************************************999.....689************************************************** PP

     DUF2203 101 lgEeeieywHeleeGfagRkpi 122
                 +g+++++++H++e+GfagR+++
  KIR60834.1  95 EGDSDVRWYHRVECGFAGRRRV 116
                 *******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 849.55
//
Query:       KIR60835.1  [L=315]
Description: hypothetical protein TK50_23635 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-73  245.5   6.7    8.8e-73  245.3   6.7    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.3   6.7   4.9e-77   8.8e-73       6     294 .]      21     303 ..      16     303 .. 0.95

  Alignments for each domain:
  == domain 1  score: 245.3 bits;  conditional E-value: 4.9e-77
                 SS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT.TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-E CS
        PALP   6 gpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkeg.tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGae 103
                  +TPl+++  + +e+g +l++K E+l++tgSfK+Rg+ ++l++l+e   +  ++++ s+GNh++a+A+a++++ l+ ++++p +a p k+++ r++G e
  KIR60835.1  21 VRTPLLACTHIGDEYGLDLWVKAENLQHTGSFKTRGVLNALLALTERaGRPAGLAAFSAGNHAMAVAYAGQAYALPTVVCMPPHAVPTKIEAVRRYGGE 119
                 68*****************************************6665569************************************************* PP

                 EEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCC CS
        PALP 104 vvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarsl 202
                 vv++    d+ + +++++aae +g++l+++fd+p+vi+g++tig Eil++  + p  v+vpvGgGgli+G+aa+++++ p+ r++gvep++++a++++l
  KIR60835.1 120 VVLT----DDLLGTCEAIAAE-RGYHLLPPFDDPDVIAGQATIGREILADG-PPPGLVLVPVGGGGLISGVAAAVRAAAPTARIVGVEPATANAVGHAL 212
                 ****....7788888888***.*************************9887.7********************************************** PP

                 S..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTC..EEEEEEE-B CS
        PALP 203 ragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkeg..drvvviltg 294
                 r+g   + ++++++adgla++ +++ +++++++lvd++v+v +++++ a  +l  +++++veps+a+ +aal   + g +++    rvv++l+g
  KIR60835.1 213 RTGGAAPATPPRSMADGLAAPFAGRHTLAHIQALVDDVVEVAEDAIWGAWWELLDATKLLVEPSAAVTYAAL---RTGLVSAAscTRVVLVLSG 303
                 ************************************************************************...7777776677899999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2197.93
//
Query:       KIR60836.1  [L=267]
Description: lipase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-23   82.7   0.1    4.9e-23   82.4   0.1    1.1  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
    1.7e-09   37.9   0.0    2.2e-09   37.6   0.0    1.1  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.1   5.5e-27   4.9e-23       1     177 [.      37     254 ..      37     255 .. 0.87

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 5.5e-27
                    EEESHHHHTCTTB.......CCHCHHCCCCCCCHHHTT.-EEEEE.EEHCCH-H..HHHHHHHHCTGGG-TSEEEEE--CCCCCTT--HHHHHHH. CS
  Lipase_GDSL_2   1 alGDSiTaGygad.......gggrsypaylarllaarl.gldvvnnlgvsGattallrllerlrdllrlkpdlvtiliGtNDlgrgvpaaaaaand 88 
                    alGDS++ G+ga        +++rs +ay ++l++a+  ++++    ++sGatt  + ++ +l  +l     lv ++iG+ND+g+ +  ++++ + 
     KIR60836.1  37 ALGDSYASGVGAGsytsesgSCQRSTNAY-PALYNANVkPASYKS-VACSGATT-TDVINNQLS-ALSSTTTLVSVTIGGNDVGFANIMTTCVLYG 128
                    79**********9****************.******995666666.******98.577777776.6666779*********************999 PP

                    ......................HHHHHHHHCCC...GEEE........CEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHHCT-EEE-H..... CS
  Lipase_GDSL_2  89 .....................nleelidalraaapgaril........vlgplpptpeaaadarelnaviaaynealrevaaeegvpfvDl..... 150
                                         +l+++++ +r++ap ar++        +lg++ ++ +a  +++  n+ i+ + ++ r++a+  g +f+D+     
     KIR60836.1 129 esqcvaavqaaedkaraelsgKLAKVYSGIRSKAPSARVVvvgypvfyQLGTVCVGLSAN-SRAKINEGINLVDDITRSAANSAGFTFADVrsifv 223
                    *********************************************995545554444444.444469************************88888 PP

                    .HHHHHHCCCCCGGBBTTS....SSB-HHHH CS
  Lipase_GDSL_2 151 .hdaladsgerladlladdg...lHPnaaGy 177
                     h +++ ++++l+ l         HP+aaG+
     KIR60836.1 224 gHQLCSYGEKWLHALNFASIgisYHPTAAGQ 254
                    888888888877776554449*********7 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   2.5e-13   2.2e-09       1     193 [.      35     254 ..      35     255 .. 0.70

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 2.5e-13
                  EEEEESHHHHTTTHHHHHHHCCCCEECCCTTC.GCEEEEEEECTTHHHHHHHCCHECTTTECHHHHHCTTSEEEEE--CTCC..............-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xx RF
  Lipase_GDSL   1 ivafGDSltdGdgaatlntiqlktpknlnefdlaldrianignkgasdnelqqllnkyplkseqlkalhpdlviislGtNDs..............nl 84 
                  +va+GDS   G+ga ++ + +   +++ n++  al +  + ++   s+     +  ++ +++  + +    lv + +G+ND+                
   KIR60836.1  35 YVALGDSYASGVGAGSYTSESGSCQRSTNAYP-ALYNANVKPASYKSVACSGATTTDVINNQLSALSSTTTLVSVTIGGNDVgfanimttcvlygeS- 130
                  79********8866666666666666666654.46666666666666666666668888999888888888******************99774442. PP

                  ECSSCTTTCEEH....HHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCH........CTCCCCHCCHHHHHHHHHHHHHHHHHHHHHCTEEEECHHH CS
                  xxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  85 gkkstdaakkea....eeyiknlreaikelkeegapkaivvlvsppglgp........qeekdakklgekgnefvgeynqrlndlaekdgfavvDlyd 170
                    ++  a+++ +    +e+   l +  + ++ ++ap a vv+v++p +++        +      + + k+ne ++  +++ +++a+ +gf++ D+ +
   KIR60836.1 131 --QCVAAVQAAEdkarAELSGKLAKVYSGIR-SKAPSARVVVVGYPVFYQlgtvcvglS-----ANSRAKINEGINLVDDITRSAANSAGFTFADVRS 220
                  ..33333333330001344444444466888.899***************999766551.....3446799999999999999*************** PP

                  HHHHTHCCGCHCHTSS.............SB-HHHH CS
                  xxxxxxxxxxxxxxxx.............xxxxxxx RF
  Lipase_GDSL 171 elqglsgieqlkaDgl.............Hpsekgy 193
                  ++ g     +++ + +             Hp+ +g+
   KIR60836.1 221 IFVGH--QLCSYGEKWlhalnfasigisyHPTAAGQ 254
                  **998..33333333333334444455668887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1973.46
//
Query:       KIR60837.1  [L=539]
Description: chitinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-71  241.2   2.0    2.6e-71  240.9   2.0    1.1  1  Glyco_hydro_18  Glycosyl hydrolases family 18
      3e-23   82.0   7.7    1.2e-22   80.1   7.7    2.1  1  CBM_2           Cellulose binding domain
  ------ inclusion threshold ------
      0.045   14.1   0.1      0.086   13.2   0.1    1.4  1  CBM49           Carbohydrate binding domain CBM49


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.9   2.0   4.4e-75   2.6e-71       1     312 []     172     524 ..     172     524 .. 0.90

  Alignments for each domain:
  == domain 1  score: 240.9 bits;  conditional E-value: 4.4e-75
                     EEEEEEEGGGGGSSGC....SH....TTTESEEEEEEEEEEETTTEEEESS.TTHH......................HHHHHHHHHHHHTSTT- CS
                     xxxxxxxxxxxxxxxx....xx....xxxxxxxxxxxxxxxxxxxxxxxxx.xxxx......................xxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18   1 rvvgYysswesygnny....lp....saklthiiyaFakidgengkvvvsd.wedl......................gnfeqlkklkkkknpgv 64 
                     +vvgY+ +w++yg+ny    ++    +aklthi+yaF +++g  g+  ++d ++d+                      g f+ql+klk k +p++
      KIR60837.1 172 KVVGYFAEWGVYGRNYhvknIHtsgsAAKLTHILYAFGNTTG--GRCAIGDsYADYekaytaadsvdgvadtwdqplrGSFNQLRKLK-KMYPHL 263
                     69**********99866677557899**************98..67888899999999999999999999999999************.****** PP

                     EEEEEEEETTTTTHHHHHHTSHHHHHHHHHHHHHHHHHCT....-SEEEEEES-TTTS.....TCHHHHHHHHHHHHHHHHHHHHHHTSTTCEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18  65 kvllsiGGwtdssgfslaastdasrkkfadsvvsllrkyg....fDGiDidweypggn.....pedkenytallkelrealdkakategkkllLs 150
                     kv+ s+GGwt+s+gf +aa+++   ++fa+s+++l+++ +    fDGiD+dweyp++      ++  +++++++++lr++++       +  l++
      KIR60837.1 264 KVIWSFGGWTWSGGFTQAAQNP---AAFAESCYNLVEDPRwadvFDGIDVDWEYPNACgltcdTSGPNAFKNVISALRSKFG-------SSALVT 348
                     ******************8776...9**********999999*************999**99988899***********887.......568*** PP

                     EEEESSHHH...HHHHCHHHHHHHHTSEEEEETTTSSSTTSS..BE--SS-SSB.....T.CSSHHHHHHHHHHTT--GGGEEEEEESEEEEEEE CS
                     xxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx.....x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 151 aavpasasd...lskgydlpkiakylDyvnvmtYDfhgswdn..vtghhaplyd.....a.slnvdeavkeylkagvpakklvlGvpfygrawal 234
                     aa+ a +s+   ++ ++d++ +  +l ++  mtYD++g+++    t +h+ply+     +  +n+d+a++++  +g+pa+kl lG+ fygr+w++
      KIR60837.1 349 AAITADGSNggkID-ATDYAGAIGNLNWLMPMTYDYFGAFNAqgPTAPHSPLYSydgipQaGFNSDAAIQKLKGKGIPADKLLLGIGFYGRGWTG 442
                     *******9977544.46999999999***************999**********9877626********************************** PP

                     SSSSSS..........TSTTTEEEHHHHHHHHTEEEEEEEEETTTTEEEEEETTEEEEE-SHHHHHHHHHHHHHTTESEEEEETGGGS CS
                     xxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 235 vsgadn..........tkeegvlsykelkellkkakakrkydskakapyvydgeefvsyDdpksikakadyvkakglgGvmiWsldqD 312
                     v+++            t+e+g+ +yk lk+ +      + +  + ++ y+  g++++syD+p++i  k+ y+k++glgG+++W+l++D
      KIR60837.1 443 VTQSAPggsatgaapgTYEAGIEDYKVLKNTC------PATGTVGGTAYAKCGSNWWSYDTPSTIGGKMTYAKNQGLGGAFFWELSGD 524
                     **95557788889999*************976......3344556778986666********************************98 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   7.7     2e-26   1.2e-22       2     101 .]      34     131 ..      33     131 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 2e-26
                 EEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTEE CS
       CBM_2   2 eatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGaa 100
                 +at+a+ ++W+tG +++vtv+N + +++++W++e++lpag+++ ++W+a+v++sGn+++a + sw g +apG++ s G++g+++ +  ap ++t+nGa 
  KIR60837.1  34 TATFAKAQDWGTGHETRVTVTNGSAASVSTWRIEFDLPAGTTISSAWDADVTSSGNHWVAVKKSWAGPLAPGATFSWGYNGTGAYK--APLNCTINGAP 130
                 799*****************************************************************************987765..6*********9 PP

                 - CS
       CBM_2 101 C 101
                 C
  KIR60837.1 131 C 131
                 9 PP

>> CBM49  Carbohydrate binding domain CBM49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.4e-05     0.086      20      78 ..      48     112 ..      34     113 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.4e-05
       CBM49  20 qvevtitNnssktiksltlkienla....pgeiWgvek.vskntysl..pswlsslsaGeslsFgY 78 
                   +vt+tN s + ++  +++ + l      ++ W+ +  +s+n +     sw+  l +G+++s gY
  KIR60837.1  48 ETRVTVTNGSAASVSTWRIEFD-LPagttISSAWDADVtSSGNHWVAvkKSWAGPLAPGATFSWGY 112
                 5789*************99999.44456799*****997788888653379**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3437.20
//
Query:       KIR60838.1  [L=468]
Description: phospho-2-dehydro-3-deoxyheptonate aldolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.4e-187  622.3   0.0   4.2e-187  622.0   0.0    1.0  1  DAHP_synth_2  Class-II DAHP synthetase family


Domain annotation for each model (and alignments):
>> DAHP_synth_2  Class-II DAHP synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  622.0   0.0  2.3e-191  4.2e-187       4     437 .]      36     463 ..      34     463 .. 0.99

  Alignments for each domain:
  == domain 1  score: 622.0 bits;  conditional E-value: 2.3e-191
  DAHP_synth_2   4 sswrskpaaqqpeyedeealekvlkklkklpplvtaeeieklkeqLaevaegkaflLqgGdCaEsfeectaekieeklkvllqmslvltlgaslpvv 100
                   ++wr+ p aq p ++d++++++v k l+++p++v++ e+++l+++La v+egkaflLqgGdCaE+f++ t++++ ++ ++llqm++vlt+gaslpvv
    KIR60838.1  36 DRWRELPRAQVPPWPDQAQVAEVCKVLDTVPSVVAPYEVDQLRRKLALVCEGKAFLLQGGDCAETFADNTESHLLANARTLLQMAIVLTYGASLPVV 132
                   68*********************************************************************************************** PP

  DAHP_synth_2 101 kigRiAGqyaKPRSsetetvdgkelpsyrGdivnglelteeeRepdPerllkaYfhsaatlnlvrallssgladlekveewnlefvksselkekyee 197
                   k++R+AGqy+KPRS +t+ ++   lp+yrGd +n+le+t+e+R +dP+r+++aY++saa++n++ra+l++gladl+ v++wn++fvk+s+++e+ye+
    KIR60838.1 133 KVARVAGQYTKPRSLPTDARG---LPAYRGDLINSLEATPEARVADPQRMIRAYANSAAAMNMLRAYLAGGLADLHAVHDWNKGFVKNSPAGERYEA 226
                   *****************9887...************************************************************************* PP

  DAHP_synth_2 198 laeeleealefmkaigvdeeeeeeleevdlytsHeaLlleyeealtrkdsetklydtsahflWiGdRTrqldgahveflrgieNpigvKvgpslkpe 294
                   +a+e+++a++f++a+g++e  +++l++v+ly+sHeaL ley++altr  s t+ y +s+hflWiG+RTrq+dgah++f+++i+NpigvK+gp+++p+
    KIR60838.1 227 IAREIDRAIAFIQACGMTE--DDALRTVTLYCSHEALALEYDRALTRV-SGTRAYGLSGHFLWIGERTRQIDGAHIDFISRIANPIGVKLGPTTTPD 320
                   *****************66..678***********************6.7889******************************************** PP

  DAHP_synth_2 295 elvelldilnPekepGrltlitRlgadkveelLpklieavkksgakvvwvcDpmHGNtltsssglKtRefedilkEvksfleihkeegsvlgGvhlE 391
                   e++el+++lnPe+ pGrltli+R+g++kv+++Lp+++++v+++gakvvw+cDpmHGNt++ss+g+KtR+f++i++Ev   +e+h+  ++++gG+h+E
    KIR60838.1 321 EAIELCEKLNPENIPGRLTLISRMGNHKVRDTLPPIVAKVTAAGAKVVWQCDPMHGNTHESSNGYKTRHFDRIVDEVLGYFEVHRGLETHPGGLHVE 417
                   ************************************************************************************************* PP

  DAHP_synth_2 392 ltgedVtEclggseelseedlserYetlcDPRLnaeqslelaflia 437
                   ltgedVtEclgg++ +++ dl +rYet+cDPRLn++qslelafl+a
    KIR60838.1 418 LTGEDVTECLGGAQGIEDLDLPDRYETACDPRLNTQQSLELAFLVA 463
                   ********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3362.72
//
Query:       KIR60839.1  [L=343]
Description: threonine aldolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-81  273.0   0.1    3.4e-81  272.7   0.1    1.1  1  Beta_elim_lyase  Beta-eliminating lyase
    6.8e-05   21.6   0.1     0.0001   21.0   0.1    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    0.00028   20.2   0.0    0.00034   19.9   0.0    1.1  1  Aminotran_1_2    Aminotransferase class I and II
     0.0038   16.6   1.5     0.0089   15.4   0.3    2.2  2  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
      0.014   14.1   0.1       0.33    9.6   0.0    2.3  2  Aminotran_3      Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.7   0.1   9.5e-85   3.4e-81       1     284 [.       7     282 ..       7     290 .. 0.97

  Alignments for each domain:
  == domain 1  score: 272.7 bits;  conditional E-value: 9.5e-85
                      E-S-GGG----HHHHHHHHCS----CCCT--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC CS
  Beta_elim_lyase   1 DLlSDsvtkgteamsdaqaaamlGdesYgedktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtepahihfdetgaiaela 94 
                      DL+SD+vt++t+ m++a+aaa++Gd++Yged+tvn+Le++va+lfg+eaalf+p+G +An+i+l++++ +g+e +++ +ah+ ++e ga+a+++
       KIR60839.1   7 DLRSDTVTRPTAGMREAMAAAEVGDDVYGEDPTVNALEAEVAALFGHEAALFAPTGSMANQIALQLVVPPGDELLCDADAHVVTYEIGAAAAYG 100
                      9********************************************************************************************* PP

                      --EEEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTT CS
  Beta_elim_lyase  95 gvklrdlknkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsy 188
                      g+  r+ + +   ++d+  ++ ++++++ ++ ++++i +++T+n  gG v++l+ lre++ +a++ g+ lh+DgAR++ a ++ +++++e+ + 
       KIR60839.1 101 GISSRTWPAAG-ADLDPGVVAGMVRPDDYFAVPTRAIAVEQTHNRGGGGVIPLATLRELRRVADADGLALHCDGARIWHAHVADRVPLAEYGAL 193
                      ***********.**************777***************************************************************** PP

                      SSEEEEESSSTT--SS-EEEEE-HH....HHHHHHHHHHHHT---SSTHHHHH..HHHHHHHHSSTTHHHHHHHHHHHHHHHHHCT--EEECCG CS
  Beta_elim_lyase 189 vDsvtmslkKdllanvGgvlafrddeledylaerveqrkylggglrqagvlaaleagiraleeglaslerdhktaeqlaeklelvrlaiprrvy 282
                      +D+++++l+K+l+a+vG++++++ +     + ++++ rk++ggg+rqagvlaa  ag +al +++++l++dh++a++lae+l+   + ++++v 
       KIR60839.1 194 FDTLSVCLSKGLGAPVGSLVVGSAE----RIGRARTIRKRMGGGMRQAGVLAA--AGRYALAHHVERLADDHAKAARLAEALAPFGV-LASPVR 280
                      *************************....9***********************..*************************9987765.455555 PP

                      TT CS
  Beta_elim_lyase 283 tq 284
                      t+
       KIR60839.1 281 TN 282
                      55 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   2.8e-08    0.0001      51     106 ..      37      92 ..      20     104 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.8e-08
                      -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEEEEEESTSSHHHHH CS
  Cys_Met_Meta_PP  51 nptrsvleeriaaLeggeaalavssGmaAiaaailallkaGdeivvsddlYggtqr 106
                       pt+++le+++aaL g eaal  ++G  A + a++ ++  Gde++++ d++  t++
       KIR60839.1  37 DPTVNALEAEVAALFGHEAALFAPTGSMANQIALQLVVPPGDELLCDADAHVVTYE 92 
                      7*****************************999999************99998887 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   9.6e-08   0.00034      32     315 ..      26     292 ..       7     336 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 9.6e-08
                    HHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTT CS
  Aminotran_1_2  32 laggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseed 127
                    +a  +   yg      +le ++a ++g        +eaa+   +G+ a++ al  +    pgde l ++  +    +i  ++    ++ +++++++
     KIR60839.1  26 AAEVGDDVYGEDPTVNALEAEVAALFG--------HEAALFAPTGSMANQIALQLVVP--PGDELLCDADAHVVTYEIGAAAAYGGISSRTWPAAG 111
                    55555667777778899**********........99999999999999988888886..************9888877777777777777889** PP

                    TEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT.--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTT..EEEEEESS CS
  Aminotran_1_2 128 fhldlealeealkeapegnkktkvilvesphNPt.GtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepn..llivgsls 220
                      ld   +   ++ + +  ++t+ i+ve  hN   G v++l++l++l ++a++ +l l +D a    +       a r+ ++e+ +  + +   ls
     KIR60839.1 112 ADLDPGVVAGMVRPDDYFAVPTRAIAVEQTHNRGgGGVIPLATLRELRRVADADGLALHCDGARIWHAHV-----ADRVPLAEYGAlfDTLSVCLS 202
                    ********************************86268************************874333333.....227888888887888999999 PP

                    STTSSGGG-EEEEEE.EHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHH CS
  Aminotran_1_2 221 KafGlaGeRvGyilg.naavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsae 315
                    K +G++    G +++ +a+ +  +r +  ++      qa v+aa+    l   ++ e+ +  ++++ +l ++La  g+   +  +++++l +++  
     KIR60839.1 203 KGLGAPV---GSLVVgSAERIGRARTIRKRMGG-GMRQAGVLAAAGRYALA--HHVERLADDHAKAARLAEALAPFGVLASPVRTNLVPLDLTKTD 292
                    *999999...99999899888888888888544.44455555555555543..4444555555556667777733344444445666666555544 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   2.5e-06    0.0089      17      73 ..      32      87 ..      18     203 .. 0.84
   2 ?   -0.8   0.0      0.21   7.4e+02     213     260 ..     228     274 ..     209     318 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.5e-06
                     S-SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS- CS
  DegT_DnrJ_EryC1 17 gwltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltF 73
                     + + ++p+v+++E+++aa  g++ a+   +G+ A+++aL+   v pgde++  +   
       KIR60839.1 32 DVYGEDPTVNALEAEVAALFGHEAALFAPTGSMANQIALQL-VVPPGDELLCDADAH 87
                     367779*********************************96.588899988765555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.21
                      CSS---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCC CS
  DegT_DnrJ_EryC1 213 evelGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaeleg 260
                      +  +G  +r   + AA g+  L++  e +a  ++ a+++ e+La  + 
       KIR60839.1 228 KR-MGGGMRQAGVLAAAGRYALAHHVERLADDHAKAARLAEALAPFGV 274
                      33.688888888999999999998888888888888888888887663 PP

>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.015        53      66     106 ..      33      72 ..      20      76 .. 0.76
   2 ?    9.6   0.0   9.2e-05      0.33     353     405 ..     289     340 ..     230     341 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.015
                  TCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHH CS
  Aminotran_3  66 altnepalklaekllklapkgldkvflansGseAvetAlKl 106
                  +++++p++++ e  ++++ + ++  ++a +Gs A+  Al+l
   KIR60839.1  33 VYGEDPTVNALEAEVAALFG-HEAALFAPTGSMANQIALQL 72 
                  56677777766655444444.5****************987 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 9.2e-05
                  BCCCETTCHHHHHHHHHCTEE-EEETTTEEEE---TT--HHHHHHHHHHHHHH CS
  Aminotran_3 353 keeaevkekeilkkakekGvlilsaGdnvirllppliitdeeidelleilkka 405
                  ++ +  + + ++++a+++Gvli  +G+++ rl+  l + d+ +d +   l ++
   KIR60839.1 289 TKTDL-DARGLAAAARAEGVLISVLGPRLARLVTHLDVDDDAVDRAAAVLAAI 340
                  44444.2367899******************************9998887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2455.19
//
Query:       KIR60840.1  [L=289]
Description: endonuclease IV [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.8e-26   90.5   0.8    1.9e-25   89.5   0.2    1.6  2  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.2   1.1e-29   1.9e-25      10     210 .]      34     246 ..      28     246 .. 0.90
   2 ?   -1.2   0.0     0.065   1.2e+03     113     136 ..     251     274 ..     249     286 .. 0.78

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 1.1e-29
                   SEEEEECCTCSHHHHC..HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS.HHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCTTTSGHH CS
  AP_endonuc_2  10 dgvElfgrdlvpvsel..sdeelrelrkaldelglriaslslftrfgypdederear.reesvdalkraielaaaLGapllvlhpGtagagpkgsee 103
                   ++v+++ ++ + ++    ++++ + +r  ++++g+ ++ +     + ++++     +  e+s + l +a+++ +a+Ga+ +v+h+G  +a + g+++
    KIR60840.1  34 EAVQVYVSNSRGWALPagDPAQDALFRDGCAARGVPVFIHASLLVNLGSPT--P--AtVERSAQTLAHALRRGRAIGARGVVFHAG--SAVDAGHAD 124
                   5788888888888877999999999***********999999999999888..2..356999************************..9******** PP

                   HHHHHHHHHHHHHHHHHH.HHTSEEEEE--TTTTSSSTC..HHHHHHHHHHTTTT.EEEEEEHHHHHHH......TTTHHHHHHHHHGG.....EEE CS
  AP_endonuc_2 104 eawerlaeslneladyae.kegvklalEtlagsgvelgd..eelarlldavdspn.vgvclDtgHllia......eedvddalraladr.....ikh 185
                   +a+++++e+l  l+d++  + g  l++E+ ag g +l    e+l   ldavd++  +gvc+Dt+H+++a      e+ + + l++l        +++
    KIR60840.1 125 AALRQVREALLPLLDETTaTDGPLLLVEPSAGGGRSLASrvEHLGPYLDAVDRHPgLGVCFDTCHAWAAghdlaaEGGMTACLDTLVATvgpdrLRL 221
                   ****************99788899**********99999************************************6666666666666566668*** PP

                   EEE.EESSTTTTSSTTEESTTSSSS CS
  AP_endonuc_2 186 vHikDakgdlgagrdrhvpigeGei 210
                   vH++D+k+ +g+ rdrh++ig+G i
    KIR60840.1 222 VHANDSKDLCGSTRDRHENIGKGSI 246
                   **********************976 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.065
                   HHHHHHHHHHHTSEEEEE--TTTT CS
  AP_endonuc_2 113 lneladyaekegvklalEtlagsg 136
                   + el ++ +++g+ +++Et ++++
    KIR60840.1 251 FAELMAHPATAGIPIVVETPTEKH 274
                   56788888899*******998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2200.38
//
Query:       KIR60841.1  [L=661]
Description: serine/threonine protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-48  164.6   0.0    3.6e-48  164.2   0.0    1.1  1  Pkinase         Protein kinase domain
    1.2e-45  153.2  14.2    1.2e-13   50.7   1.3    4.7  4  PASTA           PASTA domain
    3.3e-36  124.9   0.0    4.9e-36  124.3   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    1.8e-08   34.7   7.0    5.7e-07   29.7   2.3    3.5  3  APH             Phosphotransferase enzyme family
      0.004   16.5   0.0     0.0064   15.9   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0046   15.8   0.0      0.007   15.2   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.012   15.2   0.1      0.027   14.1   0.1    1.6  1  RIO1            RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.2   0.0   1.4e-51   3.6e-48       5     254 ..      22     281 ..      18     291 .. 0.91

  Alignments for each domain:
  == domain 1  score: 164.2 bits;  conditional E-value: 1.4e-51
                 EEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH......HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--H CS
     Pkinase   5 eklGeGsfGkVykaveketgkivAvKkikkekakkkke......kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslse 97 
                  ++ +G++++Vy a++++ +++vAvK+i   +a++ +        +++ E k +++l hpn+v +y+  ++    ylv+eyv+g +l d+l +++ l++
  KIR60841.1  22 GRVARGGMATVYTATDERLERTVAVKIIHPTQATEARArmagflARFTDEAKTIARLTHPNVVAVYDQGTHAGLPYLVMEYVRGRTLRDVLAERRRLNP 120
                 56779**************************99998888999999****************************************************** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET..........TTEEEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHHTTSCBSHHHHHHHH CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLide..........kgelKitDFGlakelesssk...ltsfvgtseYlAPEvlkeneyskkvDvWsl 183
                 +ea  i++q+l++++  H++g++HrD+KpeN+L+ e          + ++K++DFGla+ +e ss+    ++ ++t  Y+APE++++ + ++ +Dv+s+
  KIR60841.1 121 DEALAIMEQMLAAIAAAHRAGLVHRDVKPENVLVAEaptggvanlvDSVVKVADFGLARAVEASSEeepGNQLMATVAYVAPELVTDGRSDTRTDVYSA 219
                 ***********************************86777766666666*************99999999***************************** PP

                 HHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS....-HHHHHHHHHHT-SSGCCSTT CS
     Pkinase 184 Gvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei....seeakdllkkllkkdpkkRlt 254
                 G++l+e+ltg+ p+ g++  + +++++d+             ++p +s++    ++ + dl+ +  ++dp  R+t
  KIR60841.1 220 GIVLFEMLTGRVPYDGDRPVDVAWQHVDR-------------DVPAPSTLvpglPRALDDLVARATRRDPGARPT 281
                 ***************88888888888877.............455555555555999999**********99999 PP

>> PASTA  PASTA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   4.8e-10   1.2e-06       3      62 ..     405     465 ..     403     466 .. 0.92
   2 !   50.7   1.3   4.5e-17   1.2e-13       3      63 .]     473     534 ..     472     534 .. 0.92
   3 !   48.9   0.4   1.7e-16   4.4e-13       2      62 ..     540     599 ..     539     600 .. 0.95
   4 !   31.9   0.3   3.4e-11   8.6e-08       1      59 [.     605     658 ..     605     659 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 4.8e-10
                 --TTTTSBHHHHHHHHHHTT--CCCEEE.ECTCCGTTBEEEECS-TTSEECTTS-EEEEEE CS
       PASTA   3 vPdvtGmsvdeAkatLkalGlkiktvee.tsddvpeGtVisQsPeaGtevskgskvtltvs 62 
                  P ++G++++eA+ ++   G+  ++ e+ +++ vp + V+ Q+P++ +++ kg ++tlt+s
  KIR60841.1 405 APELVGLTKAEAEGQADRGGFVLRYAEPrYDEKVPRDAVLTQDPASAARIVKGGTITLTLS 465
                 599******************666666669******************************9 PP

  == domain 2  score: 50.7 bits;  conditional E-value: 4.5e-17
                 --TTTTSBHHHHHHHHHHTT-.-CCCEEEECTCCGTTBEEEECS-TTSEECTTS-EEEEEEE CS
       PASTA   3 vPdvtGmsvdeAkatLkalGl.kiktveetsddvpeGtVisQsPeaGtevskgskvtltvsk 63 
                 vPdv+G++++ A+a L++++l   k+   ++d+ peG V++++P+ Gtev++g kvt+++sk
  KIR60841.1 473 VPDVVGKDFELAEADLTNAELvVAKGGSRYDDNLPEGVVVATDPKVGTEVKPGAKVTVILSK 534
                 9********************65555555*******************************98 PP

  == domain 3  score: 48.9 bits;  conditional E-value: 1.7e-16
                 E--TTTTSBHHHHHHHHHHTT--CCCEEEECTCCGTTBEEEECS-TTSEECTTS-EEEEEE CS
       PASTA   2 tvPdvtGmsvdeAkatLkalGlkiktveetsddvpeGtVisQsPeaGtevskgskvtltvs 62 
                  vP+++G++++eA+a+L +lGl + +++++ +d+p + +++QsP++Gt v+kg +v+l vs
  KIR60841.1 540 SVPNLVGKNLGEARAALAQLGL-VPVETYKKSDKPRDEILGQSPASGTGVEKGAQVKLDVS 599
                 59********************.8888889*****************************99 PP

  == domain 4  score: 31.9 bits;  conditional E-value: 3.4e-11
                 EE--TTTTSBHHHHHHHHHHTT--CCCEEEECTCCGTTBEEEECS-TTSEECTTS-EEE CS
       PASTA   1 vtvPdvtGmsvdeAkatLkalGlkiktveetsddvpeGtVisQsPeaGtevskgskvtl 59 
                 v vP v+ ++  +Ak++L++ Gl     ++++  +p GtV  Q+P ++++v++g+ vt+
  KIR60841.1 605 VVVPRVVDLPCQQAKQQLESQGL-----PVNVQFNPNGTVRFQNPGENSQVPPGTPVTI 658
                 78*********************.....5588889**********************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0   1.9e-39   4.9e-36       7     251 ..      24     281 ..      18     285 .. 0.86

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 1.9e-39
                  EEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.......HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   7 lGeGafGkVvegtlkgekekkevkVavKtlkeeateee.......keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  +++G  ++V+ +t +    + e +VavK+++ ++  e         +++++eak++ +l hpn+v+++   t+++  ++v+eyv+g +L++ L ++  
   KIR60841.1  24 VARGGMATVYTATDE----RLERTVAVKIIHPTQATEArarmagfLARFTDEAKTIARLTHPNVVAVYDQGTHAGLPYLVMEYVRGRTLRDVLAER-- 115
                  455555666665555....8899*******765544442233344567899*******************************************98.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE..........TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse..........nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsk 185
                  ++l+ ++ l ++ q+ ++++  ++  lvHrd+   NvL++e          ++vvk++DfGLar++e ++e +  ++    v ++apE +++++  ++
   KIR60841.1 116 RRLNPDEALAIMEQMLAAIAAAHRAGLVHRDVKPENVLVAEaptggvanlvDSVVKVADFGLARAVEASSEEEPGNQLMATVAYVAPELVTDGRSDTR 213
                  9*****************************************************************999999************************** PP

                  HHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEE.S-B..BTTSBHHHHHHHHHHT-SSGGGS-- CS
  Pkinase_Tyr 186 sDvWsfGvllwEiftlgespypglkneevleklkegkr.lek..pekcpeelyelmkkcweedpeeRpt 251
                  +Dv+s G++l+E++t g+ py g ++ +v+ +  ++    +       p++l +l+ +  ++dp  Rpt
   KIR60841.1 214 TDVYSAGIVLFEMLT-GRVPYDGDRPVDVAWQHVDRDVpAPStlVPGLPRALDDLVARATRRDPGARPT 281
                  ***************.********999988776444331222113457889999999999999999997 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   2.3   2.2e-10   5.7e-07      13     108 ..      32     140 ..      22     141 .. 0.85
   2 !   16.0   0.2   3.4e-06    0.0088     142     182 ..     120     158 ..     111     178 .. 0.72
   3 ?   -4.3   5.7       5.3   1.4e+04      53     147 ..     251     364 ..     231     384 .. 0.47

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.2e-10
                 EEEEEETT..--EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-.....B--B-CTTBS-EEETTEEEEEEE----EE-SS......HHHHHHHHHHHHHH CS
         APH  13 tylvttpa..gryvlrrnpparaaeeirrevallrlLakagv.....pvPevlagdtddeeigllfalieyvpgrsllr......klsaaqlpelleal 98 
                 +y  t+++  +++++++++p +a e  +r++ +l+ + +  +     + P v+a    ++++gl+++++eyv gr+l++      +l+++++ ++ e++
  KIR60841.1  32 VYTATDERleRTVAVKIIHPTQATEARARMAGFLARFTDEAKtiarlTHPNVVAVYDQGTHAGLPYLVMEYVRGRTLRDvlaerrRLNPDEALAIMEQM 130
                 66666666645999*******888888888888877776655578998999999999****************************************** PP

                 HHHHCCHHCH CS
         APH  99 geflaalhqv 108
                  +++aa h++
  KIR60841.1 131 LAAIAAAHRA 140
                 ********98 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 3.4e-06
                 CCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC... CS
         APH 142 ldlleeleeqvlaalaallpgelptvllHgDlhpgNllvd..p 182
                 +d   e+ + ++++++a  +++ +++l+H+D +p N+lv   p
  KIR60841.1 120 PD---EALA-IMEQMLAAIAAAHRAGLVHRDVKPENVLVAeaP 158
                 33...4444.566666666668889**************9433 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 5.3
                 B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHC..................................CHHCH.-STTTB-S CS
         APH  53 pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgefla..................................alhqvdpaalplad 117
                 p+P  l  +  ++   l++++  + pg+ +++             +g++la                                  a+ +v  +a ++a+
  KIR60841.1 251 PAPSTLVPGLPRALDDLVARATRRDPGARPTD-------------AGALLAevqlarddlgnanthtavlrpvtdetsamaqptmAVAAV-RPAQRPAW 335
                 44444444444444444444444444444444.............444444111122233333334444444444444443333333333.22233333 PP

                 HHCHTCCHHHHHHCHHHCCCGCCTCC.HHHH CS
         APH 118 flaqdlellrqlesatarllaselld.llee 147
                  +   +e+++q++ ++++ + +e +  +l++
  KIR60841.1 336 AR--LPEPEPQRPHRRRATPEPEGPMaRLAA 364
                 33..344444444444444444444444444 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.5e-06    0.0064      94     154 ..      98     157 ..      67     167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.5e-06
         Kdo  94 llterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqe 154
                 l++e + g + L d+la+ ++l+     a++++  ++ia  hrag+ H+d+ + n+l+ ++
  KIR60841.1  98 LVMEYVRG-RTLRDVLAERRRLNPDEALAIMEQMLAAIAAAHRAGLVHRDVKPENVLVAEA 157
                 77787777.5699999998889999999*****************************9876 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.7e-06     0.007     305     397 ..     120     216 ..     115     226 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.7e-06
  Pkinase_fungal 305 pkellealrDaIkghrsLflkagiLHrDiSenNilitdskke.....gerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyr 394
                     p e+l+ +++ +++    +  ag++HrD+  +N+l+ +  +       +    ++D+ la  ++  s+e+  ++ + T++++a e++ ++    r
      KIR60841.1 120 PDEALAIMEQMLAAIAAAH-RAGLVHRDVKPENVLVAEAPTGgvanlVDSVVKVADFGLARAVEASSEEEPGNQLMATVAYVAPELVTDGRSDTR 213
                     5677777777777777788.99***************88666788888889999**********8777776699*********999997766666 PP

  Pkinase_fungal 395 hDL 397
                      D+
      KIR60841.1 214 TDV 216
                     665 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.1e-05     0.027      83     141 ..      98     156 ..      31     162 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
                 EEEE--EETTEEGGBHHHCG.-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEET CS
        RIO1  83 lvmefigedgvaapklkdve.eeeeaeelyeevleemrklykeaglvHaDLSeyNvlvde 141
                 lvme++  + ++ +  +  + + +ea  ++e++l+++++  ++aglvH D+   Nvlv e
  KIR60841.1  98 LVMEYVRGRTLRDVLAERRRlNPDEALAIMEQMLAAIAA-AHRAGLVHRDVKPENVLVAE 156
                 9******5555555445555449999*********6555.55***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 4408.26
//
Query:       KIR60842.1  [L=360]
Description: polyprenyl synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-50  169.6   0.0      9e-50  169.1   0.0    1.1  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.1   0.0     5e-54     9e-50       5     250 ..      45     305 ..      43     311 .. 0.90

  Alignments for each domain:
  == domain 1  score: 169.1 bits;  conditional E-value: 5e-54
                      HHHHHHHHHSSS--HHHHHHHHHHHHHSCGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHC................TCHHH CS
  polyprenyl_synt   5 eealeylveagGKrlRpllvllaaealkeeeeelekaavlawivellhaasLvhDDimDdsetRRGqpcahrl................vGnkl 82 
                       ea+e +v  gGKrlRp++    ++  +    + +++ ++ +++e+++a+ L+hDD+mD s+tRRG+p++hr+                +G ++
       KIR60842.1  45 AEAIEAFVLGGGKRLRPAFAYWGYRGAGGG--DADQVVTALAALEFVQASALIHDDLMDRSDTRRGEPAVHRRfaarhrgagwggdadgFGDAA 136
                      5788889999******************33..4599***********************************777777788888888889***** PP

                      HHHHHHHHHHHHHHHHHHHH.STT..HHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC.SHHHHHHHHHHHTH.HHCHHHHHHHHHHTTHHHHH CS
  polyprenyl_synt  83 Aindgdfllarafellaklf.eks..lellelfsevllqtveGqlldleeekdddlskfsleeyleivkyKTa.ylfalpvalaallagasdee 172
                      Ai+ gd+ l+++ ell++   +++  +++  +f e+ +++  Gq+ld+ ++ + d+s   +e+  ++ +yK a y+++ p+ l+a+la+a  ++
       KIR60842.1 137 AILLGDLCLVWSDELLHSAGlDPRvvARARPVFDEMRTEVTVGQYLDVLTQATGDTS---VERAGKVARYKSAkYTVERPLLLGAALADAPAHV 227
                      *****************99885555689999*****************888889999...*****************************98899 PP

                      HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HHHHHHHHHHTTSSHHHHHHHH CS
  polyprenyl_synt 173 lealkdiglelGlaFQiqDDylDlfgdpevlgKpagtDiqegkctlpilkalelaspeqrkvlkeilgkkaekeedvk 250
                       +a++ +gl+lG+aFQ++DD+l +fgdp+++gKpag+D++egk t+++  a+  ++++ r+ l   lg+ + + + v+
       KIR60842.1 228 RAAYSAYGLPLGEAFQLRDDVLGVFGDPAQTGKPAGDDLREGKRTYLVAAAVAASDDAGRALLLGRLGDPELDADGVA 305
                      9****************************************************9999999888888876655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2464.84
//
Query:       KIR60843.1  [L=517]
Description: alpha-L-arabinofuranosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-136  453.9  12.5   2.5e-136  453.4  12.5    1.3  1  Glyco_hydro_62   Glycosyl hydrolase family 62
      9e-34  116.1  18.4    1.1e-20   74.1   6.4    2.8  2  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    2.8e-14   53.4   2.6    4.8e-14   52.7   2.6    1.4  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
  ------ inclusion threshold ------
       0.05   13.8   0.0        4.1    7.6   0.0    2.6  2  PAS_7            PAS fold


Domain annotation for each model (and alignments):
>> Glyco_hydro_62  Glycosyl hydrolase family 62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.4  12.5  5.6e-140  2.5e-136       1     272 []     214     487 ..     214     487 .. 0.98

  Alignments for each domain:
  == domain 1  score: 453.4 bits;  conditional E-value: 5.6e-140
  Glyco_hydro_62   1 calpssykwtstgalaepksgwaalkdftevvingkhivyasnadtg..skygsmafspfsdwsemasasqtatsfkavaptlfyfapkkiwvla 93 
                     c lps+y+w+stg la+pksgwa+lkdft++ ++gk +vya+++ ++  + +gsm+f+   + +++ sa q+++s+++vap+lfyfapk+iwvla
      KIR60843.1 214 CDLPSTYRWSSTGPLAQPKSGWASLKDFTIAPYQGKQLVYATTHSSSatGGWGSMNFGLVDNLNQLGSAPQNTMSQSTVAPSLFYFAPKNIWVLA 308
                     99****************************************9976522579******************************************* PP

  Glyco_hydro_62  94 yqwgpttfsyrtssdptnangwsaeqalfsgkisdsstgaidqtvigddknmylffagdngkiyrssmpidnfpgsfgsqsevilsdttenlfea 188
                     +qwgpt+fsyrts++p+nangwsa+q+l + +i+ds tg+idqt+igdd+nmylffagdngkiyr  mpi+nfpgsfgs++++i+sdt en+fea
      KIR60843.1 309 HQWGPTSFSYRTSTNPANANGWSAPQPLSTATITDSGTGVIDQTIIGDDQNMYLFFAGDNGKIYRQIMPIGNFPGSFGSSYTTIMSDTSENIFEA 403
                     *********************************************************************************************** PP

  Glyco_hydro_62 189 vqvytvdgqnkylmivealgangkryfrsftasslngewtaqaatesnpfagkansgatwtndishgdlvrnnpdqtmtvdpcn 272
                     +qvy+v+g n+ylmi+ea+ ++ +ryfrsfta+sl+g+wt++a+t +npfagkansgatwtndishg+l+r+++dqt t+dpcn
      KIR60843.1 404 PQVYKVQGRNQYLMIIEARTSSWERYFRSFTATSLSGTWTPNATTYNNPFAGKANSGATWTNDISHGELLRTSADQTNTIDPCN 487
                     ***********************************************************************************9 PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   6.4   2.5e-24   1.1e-20      12      89 .]      55     132 ..      47     132 .. 0.94
   2 !   46.9   4.1   7.8e-16   3.5e-12       1      61 [.     138     198 ..     138     201 .. 0.95

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 2.5e-24
                      TTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  12 dgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      +  y+++n++sgk+Ldv + +t++ga++ qwt +++++qqW+++d g+g+yr++++ sgkvLdv++ stanG ++ qw
       KIR60843.1  55 NAWYVLVNRNSGKALDVYNLATSDGARITQWTRNNGNQQQWQFVDSGGGYYRLKSRLSGKVLDVYNFSTANGGSIVQW 132
                      346********************************************99****************99**********9 PP

  == domain 2  score: 46.9 bits;  conditional E-value: 7.8e-16
                      CCGEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSE CS
  RicinB_lectin_2   1 anQqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgt 61 
                      +nQq++l ++++gy+++ n++s+k+++v+g+sta+g nv+q+++ ++ nqqW+l++ ++gt
       KIR60843.1 138 TNQQFRLADSDGGYVRFINRNSNKAVEVQGASTADGGNVVQYDDWNGSNQQWQLVRVDGGT 198
                      69*****87899******************************************9999775 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   2.6   1.1e-17   4.8e-14       2     127 .]      57     189 ..      56     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 1.1e-17
                     EEEEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEE..TTSEEEETT..TTEEEEES..SSSTTSBEEEEETTTTSGGGCEE.EETTT CS
  Ricin_B_lectin   2 sgeirnvasgkCLdvegeska.gapvglydChgskgkQlwtlt..kdgeirska.qselCldvs..staegakvvlakChkgkgnqrWe.fdkdg 89 
                     ++ ++n++sgk Ldv + ++  ga++++++ +++++ Q+w++   + g +r+k+  s++ ldv   sta+g+++v+++   +++nq+++  d+dg
      KIR60843.1  57 WYVLVNRNSGKALDVYNLATSdGARITQWTRNNGNQ-QQWQFVdsGGGYYRLKSrLSGKVLDVYnfSTANGGSIVQWSDL-NGTNQQFRlADSDG 149
                     7789**************999*************77.****995555888888878*********************977.7779***9566666 PP

                     TE..EEETTTSEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  90 tq..irhkksgkCLdvkgasksne.klilkkcdsgsdsQkW 127
                         +++++s+k ++v+gas++++ +++++  d + ++Q+W
      KIR60843.1 150 GYvrFINRNSNKAVEVQGASTADGgNVVQY-DDWNGSNQQW 189
                     668899999***************999999.679999***9 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.018        82      64     107 ..      92     135 ..      51     142 .. 0.84
   2 ?    7.6   0.0   0.00091       4.1      79     106 ..     154     181 ..     136     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.018
       PAS_7  64 errlaaaragkphsfererpdgrvievrgnplpdgGfVttytDi 107
                 ++  + + +g  ++  ++r +g+v++v +  +++gG ++ ++D 
  KIR60843.1  92 QQQWQFVDSGGGYYRLKSRLSGKVLDVYNFSTANGGSIVQWSDL 135
                 45556778888889999999******************999996 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00091
       PAS_7  79 ererpdgrvievrgnplpdgGfVttytD 106
                   +r++++ +ev+g  ++dgG V+ y+D
  KIR60843.1 154 FINRNSNKAVEVQGASTADGGNVVQYDD 181
                 56788999******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 3195.74
//
Query:       KIR60844.1  [L=305]
Description: 5,10-methylenetetrahydrofolate reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-99  330.4   0.0      1e-98  330.2   0.0    1.0  1  MTHFR     Methylenetetrahydrofolate reductase
  ------ inclusion threshold ------
       0.24   11.4   0.0       0.38   10.8   0.0    1.2  1  ALG11_N   ALG11 mannosyltransferase N-terminus


Domain annotation for each model (and alignments):
>> MTHFR  Methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.2   0.0  1.2e-102     1e-98       4     286 ..      18     299 ..      15     300 .. 0.98

  Alignments for each domain:
  == domain 1  score: 330.2 bits;  conditional E-value: 1.2e-102
                 HHHT.SS-EEEEEE---SSHHHHHHHHHHHHHHGGGG-SEEEE---CCCTTHHHHHHHHHHHHHHH-S-EEEEEESTTS-HHHHHHHHHHHHHCT--EE CS
       MTHFR   4 qaleegkalisfEffpPkteegernLleridrleevkplfvdvTwgaggstaeltssiakviqqelgleailhlTctdaskeeldkalekakelGirni 102
                 +++++ ++++sfEffpPkt++ger L+++i+ le++ p fv++T+gaggst+++t+ ++++i +e++l  ++hlT++++s++el++ + + + +G+rn+
  KIR60844.1  18 ELIRDRQPTFSFEFFPPKTAQGERLLWQAIRELESLRPSFVSITYGAGGSTRDTTVAVTERIATETTLLPMAHLTAVNHSVAELRNVIGRLAGVGVRNV 116
                 5678899******************************************************************************************** PP

                 EEE--S--TT-GG.C---S----SHHHHHHHHHHHHCGGSEEEEEE-TT--TT-S-HHHHHHHHHHHHHCT--EEEEEE-S-HHHHHHHHHHHHHCT-S CS
       MTHFR 103 lALrGDppkdedk.weekeeefkyaldLvrlireeygdlfdigvaaYPevhpeaksleadlkylkeKvdaGAdfiitQlffdvdkflkfveqvreagid 200
                 lA+rGDpp d    w +++e++ ya dLvrl+r + gd f++gvaa+P  hp+++++ +d  ++ +K++aGA+f+itQ+ffd+d +l+++++v++ag+d
  KIR60844.1 117 LAVRGDPPGDPGGeWVRHPEGVLYAEDLVRLVR-DSGD-FSVGVAAFPYKHPRSPDVASDTAHFVRKCRAGAEFAITQMFFDADDYLRLRDRVAAAGCD 213
                 ********998777*******************.99**.************************************************************ PP

                 S-EEEEE---SSHHHHHHHHHHHT----HHHHCCCTCHCT-HHHHHHHHHHHHHHHHHHHHHCT--EEEEE-TT--HHHHHHHHHC CS
       MTHFR 201 ipiipgimpiksykslkrlaklskvkiPqelldrleeikdddeavkkigielavemvkkllaegvkglHlytlnkekaileileql 286
                 +pi++g+mp+++ ++++r  +ls++ +P +l +r++e+ dd+eav+++gie a em+++ll+egv+g+H++tln+++a++e+ +ql
  KIR60844.1 214 TPILAGVMPVTQLSTIERSVQLSGAPFPPALAARFAEVADDPEAVRRLGIEQAAEMCRRLLDEGVPGIHFITLNRSTATREVWQQL 299
                 **********************************************************************************9987 PP

>> ALG11_N  ALG11 mannosyltransferase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.2e-05      0.38      14      46 ..      36      68 ..      27      99 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.2e-05
     ALG11_N 14 ggGGErVLwaavkalqkekkkvkivvYtgdlev 46
                ++ GEr Lw+a+++l++ +++ + + Y    ++
  KIR60844.1 36 TAQGERLLWQAIRELESLRPSFVSITYGAGGST 68
                4569******************99999744222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2379.49
//
Query:       KIR60845.1  [L=229]
Description: CDP-alcohol phosphatidyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-11   43.3   1.3    4.6e-11   43.3   1.3    2.3  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   1.3   2.5e-15   4.6e-11       1      66 []      50     116 ..      50     116 .. 0.92
   2 ?    0.4   0.2     0.063   1.1e+03      32      44 ..     179     191 ..     122     220 .. 0.65

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 2.5e-15
                      S-HHHHHHHHHHHHHHHHHGGGS-H.....HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf   1 nlPnaiTllrlllsvlailllltyyp...lvlailllliasltDalDGklARrlnqvstlGkllDslaD 66 
                      ++P a+T++++ll  + +++l++++p    vla+l++l+as++D++DG +A  +n +++lG + Ds+aD
       KIR60845.1  50 VTPTAVTVAGVLL--CLCVPLFAVRPvsgPVLAALFVLAASVADSVDGAVAVATNRTTRLGYVYDSVAD 116
                      58**********9..44669999999999***************************888*********9 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.063
                      HHHHHHHHHTTHH CS
  CDP-OH_P_transf  32 lllliasltDalD 44 
                      + ll+a+l++++D
       KIR60845.1 179 VGLLLAGLAGLID 191
                      2233444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1752.20
//
Query:       KIR60846.1  [L=496]
Description: phytoene desaturase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-13   48.6   1.0    2.6e-12   46.8   0.6    2.1  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    6.2e-12   45.5   0.1    6.2e-12   45.5   0.1    1.5  2  Amino_oxidase   Flavin containing amine oxidoreductase
    1.2e-07   31.7  19.0    1.4e-06   28.1  19.0    2.3  1  DAO             FAD dependent oxidoreductase
    2.1e-07   31.4   0.8    0.00048   20.6   1.5    2.8  3  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    7.6e-07   28.6   3.4    0.00016   21.0   2.9    2.8  3  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.4e-05   24.0   2.1     0.0012   17.6   2.8    2.1  2  HI0933_like     HI0933-like protein
    0.00065   19.2   0.9    0.00065   19.2   0.9    1.5  2  FAD_oxidored    FAD dependent oxidoreductase
      0.002   17.3   6.3      0.002   17.3   6.3    2.2  2  FAD_binding_2   FAD binding domain
  ------ inclusion threshold ------
      0.017   15.1   1.5      0.036   14.1   0.6    1.9  2  NAD_binding_9   FAD-NAD(P)-binding
      0.026   13.8   1.7      0.052   12.8   1.7    1.5  1  Thi4            Thi4 family
      0.037   13.6   0.7      0.066   12.8   0.7    1.4  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.13   10.7   0.0       0.16   10.3   0.0    1.1  1  FMO-like        Flavin-binding monooxygenase-like
       0.26   10.9   1.5       0.55    9.9   1.5    1.5  1  ApbA            Ketopantoate reductase PanE/ApbA
       0.35   10.1   0.3       0.53    9.5   0.3    1.1  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
       0.36    9.8   1.4       0.86    8.6   1.4    1.6  1  Lycopene_cycl   Lycopene cyclase protein
       0.54    9.3   4.2       0.76    8.8   4.2    1.1  1  GIDA            Glucose inhibited division protein A
       0.69    9.8   2.0        1.1    9.1   2.0    1.3  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
        1.1    8.5   2.8        1.7    7.8   2.8    1.3  1  FAD_binding_3   FAD binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.6   2.6e-15   2.6e-12       1      60 [.       6      69 ..       6      74 .. 0.86
   2 ?   -1.4   0.0       2.9   2.9e+03      30      52 ..     258     280 ..     246     293 .. 0.76

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 2.6e-15
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE...TT.CEECTS---EEETTHHHH CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev...pg.vrvdygahifhgsgyypn 60
                   +vGaG++Gl++A++La  g++v+++e++  +GG++ +y +    g + +d+g++ ++ ++ ++ 
     KIR60846.1  6 VVGAGVGGLATAARLAATGHEVTVFEQAGTVGGKLGRYVHdtpAGaFHFDTGPSLLTLPEVFHD 69
                   8*************************************99554238*********988654443 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.9
                    SSSGGG-EECETTCEECTS---E CS
  NAD_binding_8  30 rlGGraasyevpgvrvdygahif 52 
                      GGr++ +++ gv++ ++a ++
     KIR60846.1 258 AAGGRVHGVRLAGVAAPVPADVV 280
                    46999999999998888887765 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.1   6.2e-15   6.2e-12       2     266 ..      12     290 ..      11     306 .. 0.71
   2 ?   -3.4   0.4       4.3   4.3e+03     403     451 ..     446     491 ..     440     491 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 6.2e-15
                    HHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEET...T.EEEESS--EEETTTHHHHHHHHHTTCCCCEE..EESCCGCEEEEETTEECC..... CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGGRirtvrsd...G.ylielGamwftgagnpllellkelgledsls..lpdpgapkrvlskggref..... 86 
                     GLa+A +L++ G++Vtv+E  + vGG++  +  d   G +++++G++ +t     +  l++  g +++    l   ++  r ++ gg+       
     KIR60846.1  12 GGLATAARLAATGHEVTVFEQAGTVGGKLGRYVHDtpaGaFHFDTGPSLLTL-PEVFHDLFEATGAKLDEYldLAPLDPIVRHVFPGGGPTldsca 106
                    6**********************************99967***********9.8889999999999998885544445899999999997777777 PP

                    ..............TTEECHHHHHHHHHHHHHHHH...CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHH....HHHHH CS
  Amino_oxidase  87 ..............pgdlspvpaewealleqgals...aellsleeklrlgleallqktldeldldskslaesleelgrrepgdvev....wdrli 161
                                  +    + +++w++ ++   ++   ++ l+++                + +ld   la +l +l++  pg  ++     ++l 
     KIR60846.1 107 dpaefagrvgaafgDRAAADWQRLWRRAAR--VWDashRDILRRPV---------------DSPLDLAALAWRLGDLAAIAPGR-TLrglgRRHLA 184
                    766666666433333333333333333333..11122333333333...............44444444444444444444444.33344455555 PP

                    HHHHHHHHHHHHHCHTSTTTTCBHHHHTCCCCHHHHHTSCCCEETTHTHHHHHHHHH..TTTTEEEETSEEEEEEEE...ETTCEEEEETTSTEEE CS
  Amino_oxidase 162 epelfaklefasglfagdpselsaklalpllwelegfggslllprgGlsqlpealae..elrgldirlntrVkeikr...egdgvtvtledgevve 252
                    +p l+  l     + ++dp    a +al ++   e   g+ +++rgGl++l++al      +g+ ++++t V++i+      +gv++  +   v +
     KIR60846.1 185 DPRLRMLLDRYATYTGADP--RRAPAALVAVPYAELAFGG-WYLRGGLGTLADALLTrcLDLGVVVQTGTTVTRIDAaggRVHGVRLAGVAAPV-P 276
                    5555555557888899999..8888888889999999999.888*************9*******************84444445554434443.9 PP

                    ESEEEE-S-HHHHH CS
  Amino_oxidase 253 aDaVvvTvplgvlk 266
                    aD Vv  v+  +l 
     KIR60846.1 277 ADVVVANVDALTLY 290
                    **999988877776 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.3
                    TTHHHHHHHHHHCHHCSTTEEE.SGGGCTTTTTS.HHHHHHHHHHHHHHH CS
  Amino_oxidase 403 vgpghedydplakpegdprlffAGehtsreypgt.vegAilSGlraAari 451
                    +g+ +  ++p ++  +  +l + G + +   pg+ ++   lS+  +A++i
     KIR60846.1 446 YGTAGGLLRPANRG-PAAGLWLVGGSGH---PGGgLPMVTLSAQIVADAI 491
                    66777777888888.8888888888755...9999*********999987 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1  19.0   1.4e-09   1.4e-06       1     351 [.       3     489 ..       3     490 .. 0.52

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.4e-09
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS...STHHSTH....................................... CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl...rylpeas....................................... 55 
                 ++v++G+G+ Gl+tA  La+ g  Vt++e++  +g    g+ ++ +h            +                                       
  KIR60846.1   3 RIVVVGAGVGGLATAARLAATGheVTVFEQAGTVG----GKLGRYVHDTPagaF-----Hfdtgpslltlpevfhdlfeatgakldeyldlapldpivr 92 
                 59*****************9999********7777....666666666432221.....1344445667776555555555555555555555555555 PP

                 .................................HHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHHHH..................... CS
         DAO  56 .................................elarlslealeelreleeelgididyrrtGllslaadeeeleald..................... 100
                                                  +           +++l ++                         +                     
  KIR60846.1  93 hvfpgggptldscadpaefagrvgaafgdraaaD-----------WQRLWRR-------------------------Aarvwdashrdilrrpvdspld 155
                 5555555555555555555555443333333331...........2222222.........................0222222222222222222222 PP

                 ..................................HHHHHH.HHTTTTEEEEEHHHHHHHSTTST.....TTS.EEEEETTEEEEEHHHHHHHHHHHHHH CS
         DAO 101 ..................................kllall.leagldaelldaeevrelepalp.....gll.galfypdtgqvdpakltaalaraaea 158
                                                    ll++  +  g+d +   a+  +            +l+ g+++ ++ g      l+ al+ ++ +
  KIR60846.1 156 laalawrlgdlaaiapgrtlrglgrrhladprlrMLLDRYaTYTGADPRRAPAA--L------VavpyaELAfGGWYLRG-GL---GTLADALLTRCLD 242
                 222223333333333333332222211111111122222111123343333332..2......02334456645555555.55...669999******* PP

                 TT-EEEESECEEEEEEEETCEEEEE.EECTEEEEEEEE.EEE--GGGHHHH.HTT....CTT.TSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE.... CS
         DAO 159 lGveilegtevtgleeedgkvwgve.rttpgendaada.vVnaaGawsdll.gll....kel.dlpispvrgqvlvlkplseklvspaailpvpe.... 245
                 lGv + +gt+vt++++ +g+v+gv+     g    + a vV+a+ + +  l + l    ++l  l  + + g vl l    e+ +++++++  ++    
  KIR60846.1 243 LGVVVQTGTTVTRIDAAGGRVHGVRlA---GVAAPVPAdVVVAN-VDALTLyRDLlpspRRLaGLTDRSLAGFVLLLGVAGETGLAHHNVFFPRDydae 337
                 **************9999******542...54433344577766.333223433333222223245577999999996666666555555555554555 PP

                 ....EEETTTTEEEEEETTSEEEEEESSE..................EETTCSSTSCSHHHHHHHHHHHHHHSGGG....CGEEEEEEEEEE..ET.TS CS
         DAO 246 ....tdddgrgvyvtprkdgrvlvGgtad..................eesgdddpevdeedidellealrklfPql....gdvlrkwaGlrp..lp.dg 315
                       ++grgv ++p +d +v v    d                  +++g+ + +vd+++      ++ +++  l     dv+ + + +r   +p d 
  KIR60846.1 338 fdavFGHPGRGVRARPAPDPTVFVTVA-DdpavrpagheawfvlvnaPRHGTATGAVDWRRPGLADAYADRVLDVLaergVDVRDRLV-FREvrTPaDL 434
                 555556666666666655554444333.258888888888888888877777776666664444444444444332222344554444.4443212122 PP

                 ........SEEEEEEE..........TEEEEEEE..EECTTTHHHHHHHHHHHHHH CS
         DAO 316 ........lpligetp..........gvkglyla..tGhsghGltlapatGkllae 351
                         + + g                gl+l+  +Gh g Gl + +++++++a+
  KIR60846.1 435 daatgapgGAIYGT-AggllrpanrgPAAGLWLVggSGHPGGGLPMVTLSAQIVAD 489
                 11222332444444.25788888876455888872245788899999999999987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   1.5   4.9e-07   0.00048       1      40 [.       3      42 ..       3      47 .. 0.90
   2 ?    6.7   0.0     0.011        11      42      78 ..     232     268 ..     226     272 .. 0.87
   3 ?   -1.7   0.0       4.4   4.4e+03      38      63 ..     400     425 ..     394     434 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4.9e-07
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSH CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDe 40
                ++vvvG+G+ gl  A+ la+ g++Vtv+e + ++  +l++
  KIR60846.1  3 RIVVVGAGVGGLATAARLAATGHEVTVFEQAGTVGGKLGR 42
                79****************************9999866665 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  42 askilqeklekngievllntkveeiegsedgvesvkl 78 
                 ++++l ++  ++g+ v ++t+v++i+  +  v +v+l
  KIR60846.1 232 LADALLTRCLDLGVVVQTGTTVTRIDAAGGRVHGVRL 268
                 677888889999**************88876999998 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 4.4
                 SSHHHHHHHHHHHHHTTEEEECSEEE CS
   Pyr_redox  38 lDeeaskilqeklekngievllntkv 63 
                 l ++ ++++ + l ++g++v+   + 
  KIR60846.1 400 LADAYADRVLDVLAERGVDVRDRLVF 425
                 55666888999999999999876555 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   2.9   1.6e-07   0.00016       2      34 ..       3      35 ..       2      46 .. 0.89
   2 ?    4.3   0.0      0.02        20     186     232 ..     233     281 ..     228     284 .. 0.75
   3 ?   -0.7   0.0      0.66   6.6e+02     180     211 ..     399     430 ..     391     441 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.6e-07
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegt 34
                 ++vv+G+G++Gla+a +la+ g++vt++e+ gt
   KIR60846.1  3 RIVVVGAGVGGLATAARLAATGHEVTVFEQAGT 35
                 79**************************86665 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.02
                  HHHHHHHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCE.EEESEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.xxxxxxx RF
  Pyr_redox_2 186 saaleealekeGvevklgtsvkeidgngekle.vvledgee.idadlvv 232
                  ++al  +  + Gv v++gt+v++id+ g +++ v l      ++ad vv
   KIR60846.1 233 ADALLTRCLDLGVVVQTGTTVTRIDAAGGRVHgVRLAGVAApVPADVVV 281
                  66677777889***************99966655554444457777776 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.66
                  TS-HHHHHHHHHHHHHTTEEEEESCEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 180 aldkelsaaleealekeGvevklgtsvkeidg 211
                  +l ++ ++++ ++l ++Gv+v+ + ++ e++ 
   KIR60846.1 399 GLADAYADRVLDVLAERGVDVRDRLVFREVRT 430
                  566788999************98877777765 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   2.8   1.2e-06    0.0012       2      39 ..       3      40 ..       2      42 .. 0.96
   2 ?    3.6   0.0     0.022        22     111     160 ..     232     281 ..     229     284 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.2e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHH CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKi 39
                 +++v+G+G  Gl +A+++a++g++V+++e+a ++g K+
   KIR60846.1  3 RIVVVGAGVGGLATAARLAATGHEVTVFEQAGTVGGKL 40
                 68*********************************997 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.022
                  HHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE CS
  HI0933_like 111 ivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvl 160
                  + dall+++ + gv +++ t+v+++++  ++++ v++ +  +   + +v+
   KIR60846.1 232 LADALLTRCLDLGVVVQTGTTVTRIDAAGGRVHGVRLAGVAAPVPADVVV 281
                  7799*********************9999999999885555444445555 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.9   6.5e-07   0.00065       2      48 ..       4      50 ..       3      80 .. 0.88
   2 ?   -2.7   0.0       2.8   2.7e+03      99     126 ..     242     269 ..     231     281 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 6.5e-07
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdig 48
                  +vVvG+g++G+a A   a  G +v + e+ g +GG l + +  t+ g
    KIR60846.1  4 IVVVGAGVGGLATAARLAATGHEVTVFEQAGTVGGKLGRYVHDTPAG 50
                  8**********************************997776666655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.8
  FAD_oxidored  99 eagvtvllntrlvevekegkriesvtve 126
                   + gv v ++t++++++  g+r+++v+++
    KIR60846.1 242 DLGVVVQTGTTVTRIDAAGGRVHGVRLA 269
                   3488899999999999999999999985 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   6.3     2e-06     0.002       2      37 ..       4      39 ..       3      42 .. 0.94
   2 ?    1.0   0.1      0.17   1.7e+02     142     180 ..     231     269 ..     224     281 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2e-06
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37
                   ++V+G+G++GLa A+++a  G++v+v e+++ +gg 
     KIR60846.1  4 IVVVGAGVGGLATAARLAATGHEVTVFEQAGTVGGK 39
                   79****************************999986 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.17
                    HHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEE CS
  FAD_binding_2 142 allarlvesarkagvdfqerteadeLivedgrvtGavve 180
                    +l+ +l+++++++gv +q+ t ++++   +grv+G+ ++
     KIR60846.1 231 TLADALLTRCLDLGVVVQTGTTVTRIDAAGGRVHGVRLA 269
                    5788999*******************99999****9875 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.6   3.6e-05     0.036       1      39 [.       5      38 ..       5      53 .. 0.86
   2 ?   -1.5   0.0       2.2   2.2e+03     107     150 ..     236     281 ..     192     283 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.6e-05
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsep.gag 39
                   ++vGaG+ Gla+++rL+a       +e+t+f+++++ g g
     KIR60846.1  5 VVVGAGVGGLATAARLAAT-----GHEVTVFEQAGTvG-G 38
                   69***************99.....59*******88844.4 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.2
  NAD_binding_9 107 llarlpegvtvevhraevvdleeradgq.avlladg.aslaadaVv 150
                    ll r+ +   v    ++v++++ +++++  v+la+  a + ad Vv
     KIR60846.1 236 LLTRCLDLGVVVQTGTTVTRIDAAGGRVhGVRLAGVaAPVPADVVV 281
                    3333322223333466899999988887567776652567888776 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.7   5.2e-05     0.052      19      56 ..       3      39 ..       1      43 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.2e-05
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TT CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailersvspGGG 56
                 +v+vGaG  GL++a  la   + +v+++e+  ++GG 
  KIR60846.1  3 RIVVVGAGVGGLATAARLAAT-GHEVTVFEQAGTVGGK 39
                59******************9.9********9999995 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.7   6.7e-05     0.066       2      28 ..       3      29 ..       2      34 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.7e-05
                    EEEEE--STTHHHHHHHHHHCTSEEEE CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevig 28
                    +i+v+G+G  Gl taa la+ ghev++
      KIR60846.1  3 RIVVVGAGVGGLATAARLAATGHEVTV 29
                    8************************97 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00016      0.16       3      42 ..       3      43 ..       1      53 [. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00016
    FMO-like  3 kvaviGaGvsGlasikccleegleptcfersddiGG.lwrf 42
                ++ v+GaGv Gla+       g e t fe++  +GG l r+
  KIR60846.1  3 RIVVVGAGVGGLATAARLAATGHEVTVFEQAGTVGGkLGRY 43
                899*******************************9944455 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.5   0.00055      0.55       1      27 [.       4      30 ..       4      36 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00055
                EEEES-SHHHHHHHHHHHHHTHCEEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtli 27
                i+++GaG  G   aa+La++g++vt+ 
  KIR60846.1  4 IVVVGAGVGGLATAARLAATGHEVTVF 30
                89**********************986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   0.00054      0.53       1      40 [.       5      44 ..       5      49 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00054
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg.nignsiyryp 40
                 +++GaG  Gla+a  l   g  ++++ E++ ++g  + ry 
   KIR60846.1  5 VVVGAGVGGLATAARLAATGH-EVTVFEQAgTVGGKLGRYV 44
                 79******************9.699***9878888888876 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.4   0.00086      0.86       2      31 ..       4      31 ..       3      39 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00086
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlie 31
                   +vv+GaG  gl+ Aarl  a++g +v++ e
     KIR60846.1  4 IVVVGAGVGGLATAARL--AATGHEVTVFE 31
                   79***************..88888888776 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.2   0.00076      0.76       2      30 ..       4      32 ..       3      45 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00076
                EEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLith 30
                ++V+G+G  G++ A+ +a  G++v+ + +
  KIR60846.1  4 IVVVGAGVGGLATAARLAATGHEVTVFEQ 32
                89***********************9944 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.0    0.0011       1.1       2      30 ..       4      32 ..       3      47 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0011
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdi 30
                + v+GaG+ G   aa +a++g+eV++++ 
  KIR60846.1  4 IVVVGAGVGGLATAARLAATGHEVTVFEQ 32
                78***********************9986 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.8    0.0017       1.7       4      33 ..       4      33 ..       1      39 [. 0.91

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0017
                   EEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3  4 VlIVGaGpaGlmlallLseaGvrvvlvekr 33
                   +++VGaG  Gl +a  L+  G +v++ e+ 
     KIR60846.1  4 IVVVGAGVGGLATAARLAATGHEVTVFEQA 33
                   78***********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 3028.49
//
Query:       KIR60847.1  [L=375]
Description: glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-16   59.2   0.3    7.5e-16   58.7   0.3    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    1.6e-14   54.1   0.0    2.7e-14   53.3   0.0    1.4  1  Glycos_transf_2  Glycosyl transferase family 2
    9.6e-08   31.7   0.0    1.7e-07   30.9   0.0    1.3  1  Glyco_transf_21  Glycosyl transferase family 21
  ------ inclusion threshold ------
      0.011   16.3   0.0      0.021   15.4   0.0    1.5  1  Glyco_tranf_2_4  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.3   1.7e-19   7.5e-16       4     208 ..      40     251 ..      37     276 .. 0.85

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 1.7e-19
  Glyco_tranf_2_3   4 lavlVptfneedvlgevlesllaqey.prvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnl.gstgksralnealravk..sdlvll 93 
                      +avl p  +e+d+++ +lesllaq   p +++vv +d+s+++t++v++++a + +d rv++++    + g  gk +a  +   +++   + +++
       KIR60847.1  40 VAVLLPLRDEADRVTPCLESLLAQRGvPGLRIVVLDDGSTDGTADVVRAVAGD-DD-RVTLLTGVAPPpGWLGKPHACHQLAARADpaATALAF 131
                      899*********************85599*******************96444.45.889999876666*******98888888885555999* PP

  Glyco_tranf_2_3  94 vDdDtvvePdtlkrllqffltpkvgavg.tpvflln..rstlvsal.galefaerhlrflaarralg.vltlnG.sgslirrevlkelegldp. 180
                      vD+D+v+ P++++++++ +++++v+ +   p+ + +   ++lv++l +   +  ++l  +a+ r+ +  lt +G  +++++r+ +++ +g+ + 
       KIR60847.1 132 VDADVVLAPYAVAAAVAELRAARVTLLSpYPRIVTRtpTDRLVQPLlQW--LWLTFLPLRAMERSPRpSLTAAGgQFLVVDRAGYAAAGGHAAv 223
                      *******************9********888866543355777776355..559999999999999976766655******************* PP

  Glyco_tranf_2_3 181 lflltdDyelglrlrragfrtayvpgaa 208
                      +  + +D+el++ ++r g+r+a + g+ 
       KIR60847.1 224 ADRVLEDIELARAVKRSGGRIALADGSR 251
                      **********************988765 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0     6e-18   2.7e-14       2     129 ..      42     173 ..      41     211 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 6e-18
                      EEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEE...SSS-.HHHHHHHHHHHH--SS..EEEEEESS CS
  Glycos_transf_2   2 vviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirr...eenv.Gkagalnaglraatgd..yilflDaD 89 
                      v  p   e++ +  +lesllaq   p ++i+v+DDgStD+t++++++ a  d+rv++++    + ++ Gk  a  + +++a+     ++f+DaD
       KIR60847.1  42 VLLPLRDEADRVTPCLESLLAQRGVPGLRIVVLDDGSTDGTADVVRAVAGDDDRVTLLTGvapPPGWlGKPHACHQLAARADPAatALAFVDAD 135
                      7789999**************************************************9973334467799************99********** PP

                      EEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC CS
  Glycos_transf_2  90 depdpdwleklvealekdgadvvlgqrprifgetdeiern 129
                      ++ +p  +   v++l +  a v l +++ + + +++  r 
       KIR60847.1 136 VVLAPYAVAAAVAELRA--ARVTLLSPYPRIVTRTPTDRL 173
                      ***************99..445888777777777666655 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   3.7e-11   1.7e-07      18     148 ..     113     249 ..      96     264 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 3.7e-11
  Glyco_transf_21  18 KvnnllqaleaakydllvisDsdvrvkpdyLeellaaledpkvglVtslpvgsdak...glaaaleaafl.ntlagvlqa..klsglgfavGks 105
                        +++l a +   +  l + D+dv+++p +++  +a+l+  +v l++ +p+ + +     l + l + +  ++l+ +++       l  a G++
       KIR60847.1 113 HACHQLAARADPAATALAFVDADVVLAPYAVAAAVAELRAARVTLLSPYPRIVTRTptdRLVQPLLQWLWlTFLPLRAMErsPRPSLTAAGGQF 206
                      4444555544466778899********************************887772224444444444446775555553677799******* PP

  Glyco_transf_21 106 malrreaLeaiGGfealadeLAeDyalgkllraaGlkvvlspa 148
                      ++++r+  +a+GG +a+ad + eD +l++++++ G +++l++ 
       KIR60847.1 207 LVVDRAGYAAAGGHAAVADRVLEDIELARAVKRSGGRIALADG 249
                      ***************************************9975 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   4.6e-06     0.021       1      81 [.      47     135 ..      47     145 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.6e-06
  Glyco_tranf_2_4   1 rneadiLpeflahhlalg.f..drilvydndstDgtrailke....lpevkllhvdksyederrqvellkallaryaea.dwvlvvDaD 81 
                      r+ead+   +l+ +la + +   ri+v+d++stDgt++++++     ++v+ll+ + +  ++  + ++ ++l+ar+ +a + +++vDaD
       KIR60847.1  47 RDEADRVTPCLESLLAQRgVpgLRIVVLDDGSTDGTADVVRAvagdDDRVTLLTGVAPPPGWLGKPHACHQLAARADPAaTALAFVDAD 135
                      677777777777765543244358****************9955544669999888888778888888888888887643889999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2576.07
//
Query:       KIR60848.1  [L=245]
Description: monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-05   22.6   0.6    0.00027   20.6   0.1    2.3  2  DUF3291   Domain of unknown function (DUF3291)


Domain annotation for each model (and alignments):
>> DUF3291  Domain of unknown function (DUF3291)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.52   9.4e+03      63      74 ..      66      77 ..      58      79 .. 0.66
   2 !   20.6   0.1   1.5e-08   0.00027       8      89 ..     130     203 ..     124     245 .] 0.67

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.52
     DUF3291 63 nlsvWeslealr 74
                 l+vW+   + +
  KIR60848.1 66 ALAVWDRAADAA 77
                577887766655 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.5e-08
     DUF3291   8 rlkaplddpeladFvaaldeinalaeaspGfvwrleeeegdatalrafeddllivnlsvWeslealrafvY.ksehaevlrrr 89 
                  ++a l   + a+F +a++++ a+ +a+pG+++r+   e+      + +++    ++svW++  +l af+Y + eh++++ r 
  KIR60848.1 130 LTRARLRARRAATFWRAVPPVAAALHAAPGLLARFGVGEA------PLGWQ---GTVSVWRDPADLVAFAYrHPEHRAAITRT 203
                 5667777788899999999999999999999999943322......34444...799**************7789***99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1816.49
//
Query:       KIR60849.1  [L=160]
Description: FMN-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-10   40.9   0.1    2.3e-10   40.9   0.1    1.6  2  FMN_bind        FMN-binding domain
  ------ inclusion threshold ------
       0.16   12.0   0.0       0.25   11.4   0.0    1.3  1  Lip_prot_lig_C  Bacterial lipoate protein ligase C-terminus


Domain annotation for each model (and alignments):
>> FMN_bind  FMN-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3      0.82   7.3e+03      48      52 ..      42      46 ..      11      66 .. 0.58
   2 !   40.9   0.1   2.5e-14   2.3e-10       3      68 ..      82     155 ..      81     156 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.82
                ETCTT CS
    FMN_bind 48 DaiSG 52
                Da +G
  KIR60849.1 42 DAGTG 46
                33333 PP

  == domain 2  score: 40.9 bits;  conditional E-value: 2.5e-14
                 SSEEEEEEEEETTTSBEEEEEEEE....SSS-TTTGGG......CTTHHHH.....SSEEETCTTBHHHHHHHHHHHHHHH CS
    FMN_bind   3 ggtikvlvtvkdgdgtItgievle....hsETpglgsk......avkkdgg.....dqevDaiSGATissravkdavnaal 68 
                 +g+++v +tv +  g+It+++ l+    ++ ++++ +       +     +     + ++D++SGAT++s+++ + ++aa+
  KIR60849.1  82 WGPVQVRITV-S-GGKITDVTALQvpdgNHRDQQINDYavpilrQ-----SalaaqSADIDTVSGATVTSDGYRESLQAAI 155
                 9*********.5.457******94222233334444423555441.....134445789********************98 PP

>> Lip_prot_lig_C  Bacterial lipoate protein ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.8e-05      0.25      11      32 ..      79     100 ..      76     102 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.8e-05
                     EETTEEEEEEEEEETTEEEEEE CS
  Lip_prot_lig_C  11 rfdwGtvevrldvekgiIkdik 32 
                     +  wG v+vr++v+ g+I+d++
      KIR60849.1  79 QTRWGPVQVRITVSGGKITDVT 100
                     567****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1145.04
//
Query:       KIR60850.1  [L=466]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-16   58.4   9.6    7.4e-16   58.4   9.6    2.2  2  Ferric_reduct  Ferric reductase like transmembrane component
    1.9e-08   34.9   0.0      3e-08   34.3   0.0    1.3  1  NAD_binding_1  Oxidoreductase NAD-binding domain
  ------ inclusion threshold ------
       0.14   12.3   0.0        1.3    9.2   0.0    2.2  1  FAD_binding_8  FAD-binding domain


Domain annotation for each model (and alignments):
>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   9.6   1.2e-19   7.4e-16       1     124 [.      66     188 ..      66     189 .. 0.95
   2 ?   -0.5   0.1      0.22   1.3e+03      70     105 ..     199     233 ..     190     237 .. 0.80

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 1.2e-19
  Ferric_reduct   1 lGiaalillplalllalRnnflepltglsldklllfHkwlgvlafllallHvilyllnflrfsal.deerlldsllkkpynllGvlalllliilai 95 
                    +G++++ l+ ++++l++R +++e  ++++ d+  ++H++ g + f l+l+Hv+l ++ +  +  + + ++++   +  p +ll + al ll+++++
     KIR60850.1  66 TGLLSADLMLIQVVLMARVPLVE--RRFGQDRIARWHRLAGFASFHLLLAHVALTTIGYAGTAREdVVTQFWLLVTGYPGMLLATAALGLLVLVVV 159
                    5899999************9999..8889****************************999987778899999************************ PP

  Ferric_reduct  96 tSlkfirrrlsyelFyylHhllyvaylll 124
                    tS++  rrrl+ye + +lH   y+ ++l+
     KIR60850.1 160 TSVRAARRRLRYESWHLLHLYAYLGIALA 188
                    ************************99987 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.22
  Ferric_reduct  70 lldsllkkpynllGvlalllliilaitSlkfirrrl 105
                    +++s  +++y+++  l+ l  ++++ + l+ +r  l
     KIR60850.1 199 FVASPAARAYWWTAYLLALGSVLVFRLGLPAWR-SL 233
                    567788899999999999999999999999999.55 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0     5e-12     3e-08       1     108 [.     341     446 ..     341     447 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 5e-12
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEE.....ESSCTTTSSSEESSHHHHHHHHHHHHSST CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvav.....vsreeagweggkgrvqdalleellslkke 91 
                    m a G+G++P++++l+++  +   ++++vl+y +rtee++++r+el++la+++     vv++       r++  +++ +g  +++ l+ l + + +
     KIR60850.1 341 MFACGVGVTPLLALLWELPYA---PGQAVLLYRARTEEEIAFRAELDRLAAERGV---VVHHlvgprAGRPAWLPAYAEGVPDAEALRRLSP-DIA 429
                    7899**************997...89***********************776666...333334555777888889****************.89* PP

                    TEEEEEECSHHHHHHHH CS
  NAD_binding_1  92 ethvyvCGppgMikavr 108
                    +++v++CGp g ++a+r
     KIR60850.1 430 DHDVFLCGPDGWVDAAR 446
                    *********99888775 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00021       1.3      28     107 ..     262     328 ..     251     330 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00021
  FAD_binding_8  28 lkykaGqyvyinipslsklfwqsHPFtiasapeddklslvikvksgltkklakkllssskkelenkkaklkvlidGPYGa 107
                    l+  aGq+    + +   +    HP+++   p+ d + + +k  ++ + ++a                 ++vl++GPYG 
     KIR60850.1 262 LPVRAGQFFSWRFLDGPGW-SRAHPYSLSAPPSGDLMRITVKDLGDGSARVAAL------------RPGTRVLLEGPYGR 328
                    5566666665555333323.478*****99999*********999988877643............23578999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3756.65
//
Query:       KIR60851.1  [L=149]
Description: chromosome partition protein smc [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-34  118.9  14.2    1.6e-34  118.4  14.2    1.3  1  HEPN_SAV_6107  SAV_6107-like HEPN
  ------ inclusion threshold ------
      0.064   13.4   0.1      0.088   12.9   0.1    1.2  1  HEPN           HEPN domain


Domain annotation for each model (and alignments):
>> HEPN_SAV_6107  SAV_6107-like HEPN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4  14.2   1.7e-38   1.6e-34       1      98 []      35     133 ..      33     133 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 1.7e-38
  HEPN_SAV_6107   1 AaaaedpaeryaaahlaAlraAaAvLaargrpe.rrrrrprsaWelLaevaPelaewaalFaagaarraaieaGieravtareaddllreaeeFlr 95 
                    Aa+++ +  ryaaahlaAlraAaAvLaar+rp+ +rr+r++s+W+lL +vaPe+ ewaa+Faaga +raa+eaGi r v+ar+addllr+ae+F++
     KIR60851.1  35 AARTRPDGLRYAAAHLAALRAAAAVLAARARPApARRHRITSVWVLLCTVAPEMDEWAAYFAAGAGKRAAAEAGIPRVVSARQADDLLRAAEQFVT 130
                    677888899************************99************************************************************* PP

  HEPN_SAV_6107  96 lVe 98 
                    +Ve
     KIR60851.1 131 VVE 133
                    *98 PP

>> HEPN  HEPN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   9.8e-06     0.088      30     116 ..      47     133 ..      23     135 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.8e-06
                 HHHHHHHHHHHHHHHHTT--..SSCCHHHHHHCCHHHT...-HHHHHHHHHHHCCCHHCCCTSS--S--HHHHHHHHHHHHHHHHHHH CS
        HEPN  30 haqqaaekalKAlllkkgge.ppkthdlreLleelkkelkeseelreeleeLekayiesrYpdakeeyteedaeealkdaeevlelve 116
                 +a+ aa  a+ A+l++  +  p++ h +++ + +l +  +e +e++ ++      +  +  +  ++  + ++a ++l+ ae+++++ve
  KIR60851.1  47 AAHLAALRAAAAVLAARARPaPARRHRITSVWVLLCTVAPEMDEWAAYFAAGAGKRAAAEAGIPRVV-SARQADDLLRAAEQFVTVVE 133
                 58999999999********99****************************999999999999999995.****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1317.48
//
Query:       KIR60852.1  [L=599]
Description: hypothetical protein TK50_23775 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-11   42.0   0.1    1.5e-10   41.3   0.1    1.3  1  IMS       impB/mucB/samB family
  ------ inclusion threshold ------
      0.045   14.1   0.1       0.44   11.0   0.0    2.5  2  SPOR      Sporulation related domain


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.1   1.7e-14   1.5e-10      23     149 ..      33     153 ..      19     154 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.7e-14
                 EEEEET....TEEEEE-HHHHTTT--TTSBHHHHHTTHTT-EEEEEE-HHHHHHHHHHHHHHHHH-S..EEEEETTEEEEE-HHHHHHHH-SHHHHHHH CS
         IMS  23 vvvaqgsekrgiviavsyeArayGvkrgmrikeakklcpdlivvkvdlekyrraskkileilkrfispkvekasiDEayldltgleelaesegaalake 121
                 v+v +     + v+a+s++Ara Gv+rg r +ea+  cp l vv  d  +  ra + +++ +++  +  ve + +  + l   g ++  + e +a a++
  KIR60852.1  33 VAVLHA----NRVVACSEAARAEGVRRGLRKREAQGRCPRLTVVDHDPGRDARAFEPVVAAVEEL-AAGVEVVRPGACALAARGPARYLGGE-EAAAER 125
                 677777....99*****************************************************.669***************98989988.9***** PP

                 HHHHHHHHH---EEEEEESSHHHHHHHH CS
         IMS 122 lrkaikeelgltvsiGiasnkllAKlas 149
                 + +++++ + ++  +Gia+  ++A la+
  KIR60852.1 126 IIEHVAQTCAVESQVGIADGVFAAGLAA 153
                 ***********************99986 PP

>> SPOR  Sporulation related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.9e-05      0.44       7      46 ..     249     292 ..     248     293 .. 0.92
   2 ?   -0.6   0.0       0.2   1.8e+03      15      35 ..     362     383 ..     359     391 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.9e-05
                 -BS-EES-HHHHHHHHHHCCHHT--.......EEECCSSSCEEE CS
        SPOR   7 vQvgafsseanAerlaakLrakgfaaav....avvsgggglyrV 46 
                 v ++af+ +a Aerl ++L+a g a +     av+  g+ l+rV
  KIR60852.1 249 VDAAAFAARALAERLHDRLAAHGLACTRlgieAVTADGQELHRV 292
                 889*********************98889999999999999998 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.2
                 HHHHHHHHHHCCHH.T--...E CS
        SPOR  15 eanAerlaakLrak.gfaaava 35 
                 +++A r+++++++  g++a+v+
  KIR60852.1 362 RERAHRALSRVQGLlGPEAVVT 383
                 6677777777777777776663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4563.69
//
Query:       KIR60853.1  [L=1157]
Description: DNA polymerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-76  255.5   0.0    1.1e-75  254.6   0.0    1.5  1  DNA_pol3_alpha   Bacterial DNA polymerase III alpha NTPase do
    1.2e-54  184.1   0.0    1.8e-54  183.6   0.0    1.3  1  DNA_pol3_finger  Bacterial DNA polymerase III alpha subunit f
    3.2e-27   95.8   0.0    5.2e-27   95.2   0.0    1.3  1  PHP              PHP domain
    1.4e-25   89.3   0.0    3.4e-25   88.1   0.0    1.7  1  HHH_6            Helix-hairpin-helix motif
      9e-07   28.8   0.0    1.7e-06   27.9   0.0    1.4  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    0.00066   19.9   0.0      0.002   18.3   0.0    1.8  1  HHH_3            Helix-hairpin-helix motif
  ------ inclusion threshold ------
       0.43   10.9   4.1       0.59   10.5   0.1    3.0  4  HTH_Tnp_1        Transposase


Domain annotation for each model (and alignments):
>> DNA_pol3_alpha  Bacterial DNA polymerase III alpha NTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.6   0.0   4.3e-79   1.1e-75       2     260 .]     401     646 ..     400     646 .. 0.95

  Alignments for each domain:
  == domain 1  score: 254.6 bits;  conditional E-value: 4.3e-79
                     HHHHHHHHHHHHHSTT-.--TTHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTT--B-S--GGGGG-HHHHHTTS----HHHHT--HHHHS- CS
  DNA_pol3_alpha   2 yLrklveeglkerlkee.lpeevkerlekElevIekmgfadyflivadlvkaakkkgilvGpgRGSaagslvayllgiTeidPlkydllFerFln 95 
                     +Lr+l++ g+++r++ + ++ e  ++l++El++I+++gf++yfl+v+d+v+++++++i++ +gRGSaa+s v+y+l+iT++d +++ llFerFl 
      KIR60853.1 401 WLRELTMAGAHDRYGPPgAHPEAYAQLDHELRMIDELGFPGYFLVVYDIVAFCREQDIYC-QGRGSAANSAVCYALRITNVDAVRHRLLFERFLA 494
                     89************5554999***************************************.********************************** PP

                     TTS-------EEEEGGGHHHHHHHHHHHH-TTTEEEEEEEEE--HHHHHHHHHHHH-GGHHHHHHHHHTS---SS--GGGG-----SHHHHHHH- CS
  DNA_pol3_alpha  96 pervsmPDiDidfekerreevidyvkekyGkenvaqiitfgtlaakaairdvgralglplkevdklaklipkelgitlekaleeekelkelieed 190
                     per+ +PDiD+d+e++rreevi++v+ +yG+e++aq++++ +++ ++a+rdv++a+g++  + d+++k+i ++ ++   +           ++++
      KIR60853.1 495 PERDGPPDIDVDIESDRREEVIQHVYARYGREHAAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQIDRWGSV---A----------AVDAE 576
                     **********************************************************************987553...2..........34456 PP

                     HHHHHHHHHHHTTTT-EEEEEEEEEEEEE-SS-GGGTS-EEE-TTT--EEESS-HHHHHTTT-EEEEEEE CS
  DNA_pol3_alpha 191 eevkrlvelakkleglkrntgqHaaGvvispkeltdlvPlqkaekeeevvtqfdmedledlgllKlDfLG 260
                     +  +++v +a++l+ ++r++g+H +G+vi+++++++++P++  ++ +++v q+d++d+ ++gl+K+D+LG
      KIR60853.1 577 DVPEQVVAYANELQTFPRHLGIHSGGMVICDRPVIEVCPVEWGRMPGRSVLQWDKDDCAAVGLVKFDLLG 646
                     6778999**************************************************************9 PP

>> DNA_pol3_finger  Bacterial DNA polymerase III alpha subunit finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.6   0.0   6.9e-58   1.8e-54       1     165 [.     649     810 ..     649     811 .. 0.97

  Alignments for each domain:
  == domain 1  score: 183.6 bits;  conditional E-value: 6.9e-58
                      HHHHHHHHHHHHHHHH-----GGG--S--HHHHHHHHHT--TTSTT--SHHHHHHHHHH---SHHHHHHHHHHSSHHHHHTTHHHHHHHHHTTS CS
  DNA_pol3_finger   1 tltiirralklikekkgkeidleeipleDkkvykllskgdtlGvfqlesrgmrqllkrlkPktfeDlvalvaLyRpgpvqggnvddyikrknge 94 
                      +l++++   ++i    g+++dl ++ l+D++vy++l+++d++Gvfq+esr+++ +l+rlkP++f+Dlv+ vaL+Rpgp+qgg v++yi+r+ng+
       KIR60853.1 649 MLSALHYGYDMI----GETLDLGDMTLDDPEVYDMLCRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSVHPYIRRRNGQ 738
                      578888888899....899*************************************************************************** PP

                      S----SSHHHTTTTTTTTT---BHHHHHHHHHHHH---HHHHHHHHHHHHH.--HHHHHHHHHHHHHHHHHT CS
  DNA_pol3_finger  95 ekveyihpeleeiLketygvivyQEqvmqiaqvlagfslgeAdllrramgk.kkeeeleklkekfiegaken 165
                      e+v+y+hp +++ L++t gv+++QEq mq+a +lagf+++eAd+lrramg+ +  + ++++ +++  g++e+
       KIR60853.1 739 EPVAYPHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAEADQLRRAMGAkRSVQRMARIADRLYAGMAER 810
                      **************************************************98899**************987 PP

>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.0     2e-30   5.2e-27       1     167 []     109     282 ..     109     282 .. 0.89

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 2e-30
                 EEEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTTHHHHHHHHHHHHTTTTSEEEEEEE.......................E....EHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxx RF
         PHP   1 dlHvHteyslldgalsieelvkkakelglkaiaiTDhgnlfgyvefykaakkkykagikpiiGleayvaddse.....kerpshltllaknqeGyknll 94 
                 +lH+H+++s+ldga ++eel+++a++lgl a+a+TDh++++g+v+f++aa   ++  +  ++G+e+++   +      +    hl++la  +eGy +l 
  KIR60853.1 109 ELHAHSNFSFLDGASHPEELAEEAARLGLTALAVTDHDGFYGVVRFAEAA---RALHLPTVFGAELSLGLPGPqngepDPLGAHLLVLAHGHEGYARLA 204
                 79************************************************...5666********999877777777788899**************** PP

                 HHHHHHHH.............HHHHHHS..................TTGGHHHHHHHHHHHHHHHC....T-EEEEEGC CS
                 xxxxxxxxxxx.xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxx RF
         PHP  95 kllskaylegf.yrkpri..dkellekhsegLivlsgclkGevfealdlieveekaeealeelakif...gdyiEints 167
                   +s+a l+g  +++p     +e+ ++ +++++vl+gc+kG+v+ al+   v++ a ++l++l + f    +++E+ ++
  KIR60853.1 205 ATISRAQLRGGqKGRPDYgeLEEVAAELRDHVLVLTGCRKGHVPAALLTAGVDA-AARELDRLTALFgaeTVAVELTDH 282
                 ********98877777653234444448888**************999999999.99******9999988899998776 PP

>> HHH_6  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.0   1.3e-28   3.4e-25       1      90 []     884     991 ..     884     991 .. 0.95

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 1.3e-28
       HHH_6   1 gvevlppdvnrSeadftve...................eedgairlGLaaikglgeaaaerivaeRekegpfksledlarrvdslnkrqleaLakaGal 80 
                 gvev++pdvn+S+a++ +e                     + a+rlGL+ +++lg+ +aeri aeR+++gp++++ dlarrv+ l  +qleaLa+a+a+
  KIR60853.1 884 GVEVRRPDVNASGAKAVLEstpdtrwgsvpgepphawgLGGPAVRLGLGGVRTLGDGVAERIEAERAAHGPYRDMPDLARRVG-LPAAQLEALATADAF 981
                 89****************99999********999988444445****************************************.*************** PP

       HHH_6  81 dslglnRrql 90 
                  ++gl+Rrq+
  KIR60853.1 982 ACFGLTRRQA 991
                 ********96 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   6.5e-10   1.7e-06       2      73 ..    1071    1142 ..    1070    1145 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 6.5e-10
                       EEEEEEEEEE.EEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEE CS
  tRNA_anti-codon    2 tvaGrvtsis.drsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrrpggelelkveei 73  
                       +v G vt ++ +   g+v f+ l+D+tg+++v++ ++  +++ +  +    + v+Gr++r +g    l+++++
       KIR60853.1 1071 RVGGIVTHRQrPATAGGVTFLNLEDETGMLNVTCSPGLWQRYRKVARTSAALVVRGRLQRHEGV-TNLTADRL 1142
                       688999999999999*********************99999999999**************999.88888876 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   7.8e-07     0.002      19      61 ..     934     976 ..     930     978 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.8e-07
       HHH_3  19 lpGlgpklAknIvayReknGpfksreeLlkvkglgpktfeqla 61 
                 +  lg+ +A++I a R ++Gp++++ +L +  gl ++++e la
  KIR60853.1 934 VRTLGDGVAERIEAERAAHGPYRDMPDLARRVGLPAAQLEALA 976
                 67799***********************************987 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.4   1.1e+04      44      68 ..     209     233 ..     209     235 .. 0.80
   2 ?   10.5   0.1   0.00023      0.59      19      63 ..     536     582 ..     521     596 .. 0.74
   3 ?   -3.6   0.0       5.7   1.5e+04      28      35 ..     878     885 ..     875     886 .. 0.79
   4 ?   -0.0   0.0      0.43   1.1e+03      26      41 ..     958     973 ..     943     977 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.4
   HTH_Tnp_1  44 rrqyregeeaspaefeltaleeenr 68 
                 r+q r+g++ +p+  el + ++e+r
  KIR60853.1 209 RAQLRGGQKGRPDYGELEEVAAELR 233
                 7899999999999977777777765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00023
   HTH_Tnp_1  19 slepgksvsevArrhgvspnqLykWrrqyr..egeeaspaefeltal 63 
                 s+ p   v++vA+  g+sp q  +W +q    ++ +a +ae+++ + 
  KIR60853.1 536 SYRPRSAVRDVAKAFGFSPGQQDAWSKQIDrwGSVAAVDAEDVPEQV 582
                 3789999*********************9988778888887444433 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 5.7
   HTH_Tnp_1  28 evArrhgv 35 
                 + Arrhgv
  KIR60853.1 878 DDARRHGV 885
                 559****9 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.43
   HTH_Tnp_1  26 vsevArrhgvspnqLy 41 
                 + ++Arr g+ ++qL 
  KIR60853.1 958 MPDLARRVGLPAAQLE 973
                 6689**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 8206.37
//
Query:       KIR60854.1  [L=255]
Description: methyltransferase type 12 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-17   62.8   0.2    7.3e-17   61.9   0.2    1.5  1  Methyltransf_25  Methyltransferase domain
      9e-17   61.5   0.5    1.6e-16   60.7   0.2    1.6  2  Methyltransf_11  Methyltransferase domain
    4.7e-15   56.1   0.0    7.6e-15   55.5   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
    4.5e-14   52.6   0.0    6.1e-14   52.2   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    1.2e-11   44.6   0.0    1.7e-11   44.2   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    1.3e-06   27.9   0.0      2e-06   27.3   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    4.6e-06   26.3   0.0    6.3e-06   25.9   0.0    1.1  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
    1.4e-05   24.7   0.1    2.9e-05   23.7   0.0    1.6  2  MTS              Methyltransferase small domain
    2.3e-05   24.2   0.0      3e-05   23.9   0.0    1.1  1  Met_10           Met-10+ like-protein
    2.7e-05   23.9   0.1    4.9e-05   23.0   0.1    1.4  1  NodS             Nodulation protein S (NodS)
  ------ inclusion threshold ------
       0.01   16.9   1.1      0.024   15.6   0.1    2.0  2  Methyltransf_24  Methyltransferase domain
      0.022   14.2   0.7      0.029   13.8   0.7    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.032   14.1   0.6      0.042   13.7   0.1    1.5  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.038   13.7   0.2      0.054   13.2   0.2    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.079   13.0   0.1       0.12   12.5   0.1    1.3  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
       0.11   12.2   0.0       0.22   11.2   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
       0.28   10.2   0.0       0.39    9.7   0.0    1.2  1  RrnaAD           Ribosomal RNA adenine dimethylase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.2   6.9e-20   7.3e-17       1      97 []      44     140 ..      44     140 .. 0.94

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 6.9e-20
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBS..SSTTTEEEEEEESTGGGSSHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlp..fedgsfDlvvssgalhhlsdedlekalkeia 90 
                      vLd+G GtG ++  la+++  ++vt vD s+++l+a  +ra+e+g+  +v+ vqgd ++l    e +s+Dlv++  +l++++d+  + +++ + 
       KIR60854.1  44 VLDVGGGTGGFAVPLAQAG--HRVTVVDASPDALAALTRRAAESGVadRVRAVQGDGDALAglVEPASVDLVLCHSVLEVVDDP--APVVAALV 133
                      9*****************5..**************************************98667999*******766***9955..599***** PP

                      HHEEEEE CS
  Methyltransf_25  91 rvLkpgG 97 
                       +L+pgG
       KIR60854.1 134 TALRPGG 140
                      ******9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.2   1.5e-19   1.6e-16       1      94 [.      45     142 ..      45     144 .. 0.95
   2 ?   -2.8   0.0       9.7     1e+04      23      42 ..     207     226 ..     190     242 .. 0.48

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 1.5e-19
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTS..S-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl..kvefvvadaeklp..fednsfDlvvssevlhhvedpekalkeiaRvLkp 90 
                      LdvG GtG +a +la++g+rv+ vD s+ +l++  ++a e+g+  +v+ v++d   l   +e +s+Dlv++++vl+ v+dp+ +++ ++  L+p
       KIR60854.1  45 LDVGGGTGGFAVPLAQAGHRVTVVDASPDALAALTRRAAESGVadRVRAVQGDGDALAglVEPASVDLVLCHSVLEVVDDPAPVVAALVTALRP 138
                      8***************************************9999*9**********9556888******************************* PP

                      EEEE CS
  Methyltransf_11  91 gGll 94 
                      gG  
       KIR60854.1 139 GGAA 142
                      **86 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 9.7
                      EEES-HHHHHHHHHHCCHHT CS
  Methyltransf_11  23 gvDlskemlklakekaseeg 42 
                      gv + + +l +a + ++++ 
       KIR60854.1 207 GVRVLADLLPAAVADGQQAA 226
                      44444444444433333333 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   7.2e-18   7.6e-15       1      97 [.      45     140 ..      45     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 7.2e-18
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhlkdirevldnirk 91 
                      L++G+GtG ++ +l+++  + ++t+vD sp+a+ +a ++ a+++   +++v+  + d + l+g    +s+Dlv++++vl++++d++ v++ +  
       KIR60854.1  45 LDVGGGTGGFAVPLAQA--GHRVTVVDASPDAL-AALTRRAAES-GVADRVRAVQGDGDALAGLvepASVDLVLCHSVLEVVDDPAPVVAALVT 134
                      8****************..**************.5555555555.6899*******98888877999*************************** PP

  Methyltransf_12  92 lLkpgG 97 
                      +L+pgG
       KIR60854.1 135 ALRPGG 140
                      *****9 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   5.8e-17   6.1e-14      13     164 ..      31     204 ..      22     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 5.8e-17
  Methyltransf_23  13 lerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqg..........kfdlIvlrevlehvp 96 
                      +++l  +   +  vLd+G GtG ++  l++ g+ vt+vD+sp a + + +++ a++  +d+  a + +g          + dl+ +  vle v+
       KIR60854.1  31 RAELERRAGDRLTVLDVGGGTGGFAVPLAQAGHRVTVVDASPDALAAL-TRRAAESGVADRVRAVQGDGdalaglvepaSVDLVLCHSVLEVVD 123
                      4455544567779*****************************988877.888888888877777777778888899999*************** PP

  Methyltransf_23  97 dppellrqiatllkpgGylllseplaslkedrllldwlyl.............vpagrhisffsarslkelleeaGlevve 164
                      dp+ +++ + t l+pgG + +++ ++ ++ + ++++ +++              p++++++ ++a+  + ll  aGl+v e
       KIR60854.1 124 DPAPVVAALVTALRPGGAASVLVAGQAAAVLGRAMNGHLDvaaalaadpagtaGPRDTLRRRYDADRAAALLASAGLTVEE 204
                      ***********************99988666666663333223333333333377779*******************9865 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   1.6e-14   1.7e-11       4     108 ..      41     143 ..      38     171 .. 0.91

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 1.6e-14
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkilee 96 
                       l+vlD+G GtG ++  la ++g   +v+ +D s++a+   + +a++ g+  +v+  qgd  +l  l+e++++Dl+l+++vl  + dp+ +   
       KIR60854.1  41 RLTVLDVGGGTGGFAVPLA-QAG--HRVTVVDASPDALAALTRRAAESGVAdRVRAVQGDGDALAGLVEPASVDLVLCHSVLEVVDDPAPVVAA 131
                      689****************.544..4699*********************99***********9977999************************ PP

  Methyltransf_31  97 iervlkpggill 108
                      +  +l+pgg+  
       KIR60854.1 132 LVTALRPGGAAS 143
                      ********9865 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.9e-09     2e-06      49     156 ..      42     149 ..      25     160 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.9e-09
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT-T..TS-T-EEEEEEES-GGG-S-HHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLp..feddsfDvvtvsfGlrnvtDklkaLkea 139
                       +vlDv gGtg +a+ l+++     +v+v+D +++ L    +++ e+g+  +++ +q+++ +L    e  s D+v     l  v D   ++  +
       KIR60854.1  42 LTVLDVGGGTGGFAVPLAQA---GHRVTVVDASPDALAALTRRAAESGVAdRVRAVQGDGDALAglVEPASVDLVLCHSVLEVVDDPAPVVAAL 132
                      489************99864...457999*******************9989***********84356699****9999999999999****** PP

                      HHHEEEEEEEEEEEE-- CS
  Ubie_methyltran 140 yrvlkpGGrlvvlefsk 156
                         l+pGG+  vl   +
       KIR60854.1 133 VTALRPGGAASVLVAGQ 149
                      *********99986655 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   5.9e-09   6.3e-06       3      76 ..      43     114 ..      41     119 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 5.9e-09
  Methyltransf_15   3 vilDlfsGaGGnviqfalvfekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvf 76 
                      ++lD+ +G+GG ++ +a+ +++v  ++ +++ la  ++ a   gv+d++  v+gd   l   ++ ++  vdlv+
       KIR60854.1  43 TVLDVGGGTGGFAVPLAQAGHRVTVVDASPDALAALTRRAAESGVADRVRAVQGDGDALAGLVEPAS--VDLVL 114
                      68***********************************999999************765444333333..47776 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.7e-08   2.9e-05      27     103 ..      34     115 ..      14     149 .. 0.80
   2 ?   -2.7   0.0       3.6   3.8e+03      61      94 ..     186     220 ..     179     229 .. 0.61

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.7e-08
                 CHCC..TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTT..T.STTS-EEEEEE CS
         MTS  27 lpke..lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvle..e.veekkfdlivs 103
                 l+ +   + +vlD+G G+G  ++ la++  +  vt+vd++  Al++ ++ +++++++  v++v+ d+ +    ve++++dl+++
  KIR60854.1  34 LERRagDRLTVLDVGGGTGGFAVPLAQAGHR--VTVVDASPDALAALTRRAAESGVAdrVRAVQGDGDAlaGlVEPASVDLVLC 115
                 4443333445*****************8877..9************99999999999788888877654113256788888876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.6
                 EESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTST CS
         MTS  61 vdvdarAlesakenleankle.vevvasdvleeve 94 
                 +d+d +A  +a + l+ ++++ v+v+a  + ++v+
  KIR60854.1 186 YDADRAAALLASAGLTVEEIHgVRVLADLLPAAVA 220
                 57777777777777777777744444444444444 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   2.8e-08     3e-05      96     165 ..      36     103 ..      23     142 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.8e-08
                 TT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG--- CS
      Met_10  96 klveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevir 165
                 + + +  +V+dv  G G fa+p+a+   ++rv  +d  P++   l++  +   v+++v+++++Dg  ++ 
  KIR60854.1  36 RRAGDRLTVLDVGGGTGGFAVPLAQ--AGHRVTVVDASPDALAALTRRAAESGVADRVRAVQGDGDALAG 103
                 45566678****************9..8889999******************************998764 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   4.7e-08   4.9e-05      37     153 ..      34     156 ..      27     170 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 4.7e-08
        NodS  37 lslaqgsiadalevGcaaGalterlapyckrltvvdvveeaiararervkesshiswivsdvq.......qfstdekfdlivvaevlyyiedvaelraa 128
                 l ++ g+   +l+vG  +G +++ la   +r+tvvd  ++a+a   +r  e s ++  v  vq        +   +  dl+++  vl  ++d a + aa
  KIR60854.1  34 LERRAGDRLTVLDVGGGTGGFAVPLAQAGHRVTVVDASPDALAALTRRAAE-SGVADRVRAVQgdgdalaGLVEPASVDLVLCHSVLEVVDDPAPVVAA 131
                 5667778889*********************************99999998.44444444333111111146678899***********9999988777 PP

        NodS 129 vrnlvsllapdgq...lvfGsardavcr 153
                    lv+ l+p+g    lv G a     r
  KIR60854.1 132 ---LVTALRPGGAasvLVAGQAAAVLGR 156
                 ...5677777663222677776665555 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.1   2.3e-05     0.024      19      99 ..      59     140 ..      27     146 .. 0.75
   2 ?   -0.5   0.1       2.4   2.5e+03       8      48 ..     148     201 ..     145     234 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.3e-05
  Methyltransf_24  19 rrngagrlvavdhdpg.aeeaaalareaglddrvrlikadseealaslaagsiDllfiDgghaa.eavledleallprlapgg 99 
                       ++g+ r+++vd  p+  ++ ++ a+e+g++drvr +++d +++++ ++  s+Dl+++    +  ++ ++ + al   l+pgg
       KIR60854.1  59 AQAGH-RVTVVDASPDaLAALTRRAAESGVADRVRAVQGDGDALAGLVEPASVDLVLCHSVLEVvDDPAPVVAALVTALRPGG 140
                      34444.8999***995433334444459************99999999999*****998755543677777777778888887 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.4
  Methyltransf_24   8 Gvstlwllralrrnga.grlvavdhdpg............aeeaaalareagld 48 
                      G  +++l+ra++ + +    +a d+  +            a +aaal+++agl+
       KIR60854.1 148 GQAAAVLGRAMNGHLDvAAALAADPAGTagprdtlrrrydADRAAALLASAGLT 201
                      666666777766666544444444444355556665566555566666664443 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.7   2.8e-05     0.029     155     251 ..      34     134 ..      28     170 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.8e-05
        PrmA 155 leklvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveakleva.....lseellkeekadvivaNILaevlielaedikk 248
                 le+    + +vlDvG G+G  a+  a+ g+ +v+ vD  + A+ +  + a+  +v+++++       + + l++ +++d++++  + ev+ + a+ +++
  KIR60854.1  34 LERRAGDRLTVLDVGGGTGGFAVPLAQAGH-RVTVVDASPDALAALTRRAAESGVADRVRAVqgdgdALAGLVEPASVDLVLCHSVLEVVDDPAPVVAA 131
                 6666667779**************999997.6889*********************9887631212234444568899*****9999999887777666 PP

        PrmA 249 lvk 251
                 lv 
  KIR60854.1 132 LVT 134
                 553 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1     4e-05     0.042       5      52 ..      47      90 ..      42     161 .. 0.76
   2 ?   -3.0   0.0       5.3   5.6e+03      15      26 ..     192     203 ..     189     233 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4e-05
                E--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTT CS
     3HCDH_N  5 iGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvek 52
                +G Gt   g a  +a+ag++V++vd s++al++ ++++++  + ++ +
  KIR60854.1 47 VGGGT--GGFAVPLAQAGHRVTVVDASPDALAALTRRAAE--SGVADR 90
                45555..578999******************999988877..333333 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.3
                 HHHHHHTT-EEE CS
     3HCDH_N  15 aavfasagleVv 26 
                 aa++asagl+V 
  KIR60854.1 192 AALLASAGLTVE 203
                 677777777775 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   5.1e-05     0.054      76     169 ..      43     142 ..      26     167 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.1e-05
                 EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHH.HHHHHHHHHHHCTTCSEEEEES-GG..GTTGGG-SEEEEEESSBBSS-....-..HHHHHTEEE CS
        PCMT  76 rvLevGsGsGyltavlarlvgekgrvvsierike.lveeakrnlkkldlenvivvvgDGr..kGyeekaPYdaihvgaaapei....P..ealidQLke 165
                  vL+vG+G+G  ++ la+  ++++    ++ +++ l++ ++r  +   +++v  v gDG    G  e a  d ++     + +    P   al++ L +
  KIR60854.1  43 TVLDVGGGTGGFAVPLAQAGHRVT---VVDASPDaLAALTRRAAESGVADRVRAVQGDGDalAGLVEPASVDLVLCHSVLEVVddpaPvvAALVTALRP 138
                 69*********9999998655444...66777761555555566666667*******997336988888888887655443332211222577788888 PP

                 EEEE CS
        PCMT 166 GGrl 169
                 GG  
  KIR60854.1 139 GGAA 142
                 8765 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00011      0.12      18      69 ..      53     201 ..      51     224 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
                 HHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH.............................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................................. RF
        CbiA  18 nLaralarrglrVllvDaDpqannlaileglendiep.............................................................. 54 
                 ++a+ la++g+rV +vDa p+a ++ +    e  ++                                                               
  KIR60854.1  53 GFAVPLAQAGHRVTVVDASPDALAALTRRAAESGVADrvravqgdgdalaglvepasvdlvlchsvlevvddpapvvaalvtalrpggaasvlvagqaa 151
                 57888****************888876555555555567788898888888999998888888888888888888888888888888888777777777 PP

                 ...................................CCHCCCHHHHHHCHC CS
                 ...................................xxxxxxxxxxxxxxx RF
        CbiA  55 ...................................dlkrllellealgkk 69 
                                                    d++r   ll++ g +
  KIR60854.1 152 avlgramnghldvaaalaadpagtagprdtlrrryDADRAAALLASAGLT 201
                 77777666666666666666666666666666666666666666555554 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00021      0.22      13     114 ..      25     121 ..      20     139 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
      DUF938  13 pilevLksylaktte...rvLEiasGtGqHAvffApalpnlkwqpsdqdeelresiaawadelalsnlkpPleldvtaevapvereappapasidails 108
                  i +vL+  l+++      vL+++ GtG  Av +A+a  +++   + +d    ++++  a+e +++     ++ d  a           +pas+d++l+
  KIR60854.1  25 VIWSVLRAELERRAGdrlTVLDVGGGTGGFAVPLAQAGHRVTVVDASPDA--LAALTRRAAESGVADRVRAVQGDGDALAGL------VEPASVDLVLC 115
                 5889999999988766678****************998777665444433..334555555555444333333333222222......24566666666 PP

      DUF938 109 inllHi 114
                   +l +
  KIR60854.1 116 HSVLEV 121
                 666655 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00037      0.39      28      84 ..      34      97 ..      23     101 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00037
                GG....TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HH.HHHHHHCHTT..TCCCEEEE-S- CS
      RrnaAD 28 le....ekltvleigpGkGilTeeLakrakqvvvlElder.Lakllqkkls..kdeklkvvhqD 84
                le    + ltvl++g G+G + ++La+    v+v+   ++ La+l++ + +   + ++  v+ D
  KIR60854.1 34 LErragDRLTVLDVGGGTGGFAVPLAQAGHRVTVVDASPDaLAALTRRAAEsgVADRVRAVQGD 97
                555566789*************************998876255555554446666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1723.86
//
Query:       KIR60855.1  [L=419]
Description: DNA polymerase IV [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-51  173.0   0.0    6.6e-51  172.2   0.0    1.4  1  IMS              impB/mucB/samB family
    3.3e-23   82.6   0.0      7e-23   81.6   0.0    1.6  1  IMS_C            impB/mucB/samB family C-terminal domain
    4.1e-06   26.8   0.0    1.1e-05   25.5   0.0    1.7  1  IMS_HHH          IMS family HHH motif
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.37   10.7   0.0    1.8  1  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.2   0.0   1.5e-54   6.6e-51       1     149 [.      29     174 ..      29     175 .. 0.98

  Alignments for each domain:
  == domain 1  score: 172.2 bits;  conditional E-value: 1.5e-54
                 EEETTHHHHHHHHHT.T-TTS-EEEEET....TEEEEE-HHHHTTT--TTSBHHHHHTTHTT-EEEEEE-HHHHHHHHHHHHHHHHH-S..EEEEETTE CS
         IMS   1 iDmdaFyasverardpeLkgkPvvvaqgsekrgiviavsyeArayGvkrgmrikeakklcpdlivvkvdlekyrraskkileilkrfispkvekasiDE 99 
                 +DmdaFyasve +r+peL+g+Pvvv++  + rg+v a+syeAr+yGv+++m+i  a++lcp+++++++d+++y  as+++++il++  +p+ve++s+DE
  KIR60855.1  29 VDMDAFYASVEVRRRPELRGRPVVVGGVGP-RGVVSAASYEARRYGVRSAMPIMRARALCPHAVYLPPDFAQYTAASRAVMQILRDV-TPLVEPLSLDE 125
                 7**************************977.6*******************************************************.88********* PP

                 EEEE-HHHHHHHH-SHHHHHHHHHHHHHHHH---EEEEEESSHHHHHHHH CS
         IMS 100 ayldltgleelaesegaalakelrkaikeelgltvsiGiasnkllAKlas 149
                 a+ld+ g ++l++ + a++a+ +r++++ee glt+s+G+a++k++AKl s
  KIR60855.1 126 AFLDVAGARRLFGPP-AEIARGIRARVAEEQGLTCSVGVAPSKFVAKLGS 174
                 **************8.*******************************987 PP

>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   1.6e-26     7e-23       2     114 ..     256     367 ..     255     371 .. 0.90

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 1.6e-26
       IMS_C   2 vearpepksissektfpe.pydesklkkelreLaeelarrLrdkglvartitlklrysdfh.asrsatLprptsdtreileaalkLlrrlidepglpir 98 
                 v+++++ ksi++e tf+    d+++++  l  Lae++ +rLr++g+v+rt+++k+r++df+  srs+tL+++t+++re++++a  L+   +++pg++ir
  KIR60855.1 256 VSPEQVEKSIGAEVTFDAdVADPLEIRRALLALAEKVGARLRRAGQVGRTVSIKVRTADFRtVSRSRTLDVATDTAREMFDTAWALY--TVLDPGERIR 352
                 578999************5556888999999*****************************99*************************..55558***** PP

       IMS_C  99 ligvsasnlvekaesq 114
                 l+gv++ +l+ +a+++
  KIR60855.1 353 LVGVRMEGLA-PAGET 367
                 **********.44443 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   2.4e-09   1.1e-05       2      32 .]     188     218 ..     187     218 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 2.4e-09
     IMS_HHH   2 ddvkefLwplpitkipGiGgklgekLeklGi 32 
                 d+v +fL plp+  ++G+G + +e L+ lG+
  KIR60855.1 188 DRVLDFLRPLPVDALWGVGERSAETLRRLGL 218
                 7899************************996 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.2e-05      0.37       7      30 ..     203     226 ..     201     236 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.2e-05
  DNA_pol_lambd_f   7 yGVGpktAkkwyakGirtledlra 30 
                      +GVG + A+ + + G+ t+ dl +
       KIR60855.1 203 WGVGERSAETLRRLGLATIGDLAE 226
                      9*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2736.71
//
Query:       KIR60856.1  [L=132]
Description: hypothetical protein TK50_23800 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-25   86.7   0.3    9.6e-25   86.7   0.3    1.6  2  DUF3040   Protein of unknown function (DUF3040)
     0.0042   17.2   1.1     0.0051   16.9   1.1    1.1  1  DoxX_2    DoxX-like family
     0.0069   15.4   0.2     0.0077   15.2   0.2    1.1  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.065   13.5   1.8      0.088   13.1   1.8    1.3  1  RskA      Anti-sigma-K factor rskA
          3    7.5   4.8         21    4.8   0.6    2.2  2  DUF3098   Protein of unknown function (DUF3098)


Domain annotation for each model (and alignments):
>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.3   2.7e-28   9.6e-25       1      83 [.       1      79 [.       1      80 [. 0.87
   2 ?   -1.6   0.1      0.97   3.5e+03      36      41 ..     102     107 ..      88     120 .. 0.52

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 2.7e-28
     DUF3040  1 MpLsehEqrvLeeiEraLaaeDPklaaalrggaararrrslrrlavlavllfvaGllllvlGvaaaavvlgvvGfvvmlagvv 83
                MpLsehEqr++e+iEr+L aeDPk+a+a+r++++r ++r  rr +++a+ ++++Gl+llv G++ +++ l+vvGfv+ml+ ++
  KIR60856.1  1 MPLSEHEQRLFEQIERSL-AEDPKFASAVRASDPRFHAR--RR-LLVAAGAIIVGLALLVYGAVIKTPPLAVVGFVIMLGSAA 79
                9*****************.7*********9998886666..66.5555556678********888889***********9875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.97
     DUF3040  36 arrrsl 41 
                 +rrr +
  KIR60856.1 102 SRRRPR 107
                 222222 PP

>> DoxX_2  DoxX-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.1   1.4e-06    0.0051      41      88 ..      44      89 ..      18     100 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.4e-06
      DoxX_2 41 lGvvellgalgLllplvtaprltplAavglallmvgAiathlrrgdpk 88
                 + + ++g ++L+ ++v+  ++ plA vg++++++ A+++   +++ +
  KIR60856.1 44 AAGAIIVGLALLVYGAVI--KTPPLAVVGFVIMLGSAAYAVQSHRKAQ 89
                344557788888888644..3669************999987776654 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   2.1e-06    0.0077     270     315 ..      34      80 ..      24     101 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.1e-06
       MFS_1 270 rlgrrrrlllallllllaalglallavtssavllllvlvl.iGfglg 315
                 r+ +rrrll+a +++++++++l++ av+++++l+++++v+ +G ++ 
  KIR60856.1  34 RFHARRRLLVAAGAIIVGLALLVYGAVIKTPPLAVVGFVImLGSAAY 80 
                 7899*****************************99977775666433 PP

>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.8   2.5e-05     0.088       4      57 ..       9      77 ..       7     120 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.5e-05
                HHHHHHHHTT-X...........................XXXXXXXXXXXXXX...................... CS
        RskA  4 rlwarilaalaatpqaaaaaaaaaaapppaaapaararrlaaaaAaalllvlg.....................q 57
                rl ++i+++la +p  a+a +a  ++  ++++       l+aa A +++l+l                       
  KIR60856.1  9 RLFEQIERSLAEDPKFASAVRASDPRFHARRRL------LVAAGAIIVGLALLvygaviktpplavvgfvimlgS 77
                7999************99988887755544433......333333222233222333334444433333332320 PP

>> DUF3098  Protein of unknown function (DUF3098)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.6    0.0058        21      41      63 ..      37      59 ..      29      64 .. 0.73
   2 ?    4.7   0.2    0.0063        22      17      29 ..      67      79 ..      63      88 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0058
     DUF3098 41 sfrRirlAPivvliGfvieiyaI 63
                  rR+ +A   +++G+++ +y+ 
  KIR60856.1 37 ARRRLLVAAGAIIVGLALLVYGA 59
                56788888888888888888864 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0063
     DUF3098 17 iilGfiLmsGggs 29
                 ++Gf++m G+ +
  KIR60856.1 67 AVVGFVIMLGSAA 79
                5789999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 914.83
//
Query:       KIR60857.1  [L=295]
Description: hypothetical protein TK50_23805 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2017.97
//
Query:       KIR60858.1  [L=73]
Description: hypothetical protein TK50_23810 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       183  (0.0102069); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 623.41
//
Query:       KIR60859.1  [L=59]
Description: hypothetical protein TK50_23815 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-21   75.1   0.9    3.5e-21   75.0   0.9    1.0  1  DUF397        Domain of unknown function (DUF397)
  ------ inclusion threshold ------
       0.12   12.7   0.0        0.2   12.0   0.0    1.3  1  Cohesin_HEAT  HEAT repeat associated with sister chromatid co


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.9     4e-25   3.5e-21       2      54 .]       7      58 ..       6      58 .. 0.94

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 4e-25
      DUF397  2 tWrKSsySgggggnCVEvaalpd.avavRDSkdpdgpvLtftpaewaaFlagvk 54
                +Wr S++Sgg+g +CVE + +++ a +vRDSkd++gpvL f+p++w++F++++k
  KIR60859.1  7 QWRTSTRSGGNG-ACVEARYTDHsA-QVRDSKDRQGPVLSFSPSAWTSFVDALK 58
                7*********99.5****9999985.7************************997 PP

>> Cohesin_HEAT  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.2e-05       0.2      23      37 ..      21      35 ..      20      35 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.2e-05
                  HHHHHHSS-HHHHHH CS
  Cohesin_HEAT 23 iarrltDsspsVRdA 37
                  +++r tD s++VRd+
    KIR60859.1 21 VEARYTDHSAQVRDS 35
                  789**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 422.65
//
Query:       KIR60860.1  [L=279]
Description: hypothetical protein TK50_23820 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-16   58.0   1.3    2.8e-15   56.4   1.3    1.9  1  HTH_31    Helix-turn-helix domain
    8.9e-07   28.9   0.2    1.6e-06   28.0   0.2    1.5  1  HTH_3     Helix-turn-helix
    9.2e-07   28.6   0.1    3.7e-06   26.7   0.1    2.1  1  HTH_25    Helix-turn-helix domain
    0.00086   19.3   0.1     0.0015   18.5   0.1    1.4  1  HTH_19    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.015   15.4   0.0      0.039   14.1   0.0    1.7  1  HTH_17    Helix-turn-helix domain
      0.032   14.2   1.2       0.07   13.1   0.1    2.1  2  HTH_37    Helix-turn-helix domain
      0.049   13.5   0.1       0.18   11.6   0.1    2.0  1  HTH_23    Homeodomain-like domain
       0.05   14.1   0.2       0.73   10.3   0.0    2.2  2  HTH_26    Cro/C1-type HTH DNA-binding domain
      0.088   12.8   0.0       0.18   11.8   0.0    1.5  1  RWP-RK    RWP-RK domain
       0.12   12.2   0.0       0.26   11.1   0.0    1.5  1  HTH_psq   helix-turn-helix, Psq domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   1.3   1.6e-18   2.8e-15       1      63 [.      10      71 ..      10      72 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 1.6e-18
      HTH_31  1 aLGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerae 63
                +LGa+Lr++Re+a ++ e++A+ + vs+stl+r+EqGr g  +  +l+al++ +g ++ae++e
  KIR60860.1 10 QLGAHLRRAREKADVTTEQAAKIIEVSPSTLRRIEQGRVG-LKGPALNALLDRYGITDAELRE 71
                79*************************************9.*****************99876 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.2   9.1e-10   1.6e-06       1      55 []      15      69 ..      15      69 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 9.1e-10
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsldel 55
                l+++R++++ + e++A+ + vs+st++riE G+       l +l++ +g++ +el
  KIR60860.1 15 LRRAREKADVTTEQAAKIIEVSPSTLRRIEQGRVGLKGPALNALLDRYGITDAEL 69
                89******************************999***99999999999987765 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1   2.1e-09   3.7e-06       2      35 ..      15      48 ..      14      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.1e-09
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT-- CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEeddf 35
                Lr+aRe++  + e++ak + +++++l+++E++++
  KIR60860.1 15 LRRAREKADVTTEQAAKIIEVSPSTLRRIEQGRV 48
                9******************************987 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   8.5e-07    0.0015       1      55 [.      12      65 ..      12      78 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.5e-07
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgid 55
                G  L++aRe++  t e+ a+ + +s+s ++ iE g+   ++ + l++++  +gi+
  KIR60860.1 12 GAHLRRAREKADVTTEQAAKIIEVSPSTLRRIEQGRV-GLKGPALNALLDRYGIT 65
                5669*******************************99.99999999999999997 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.2e-05     0.039       3      27 ..      25      48 ..      24      55 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-05
      HTH_17  3 tveEaAelLgvsrstvyrlirrgel 27
                t+e+aA++  vs+st++r i +g+ 
  KIR60860.1 25 TTEQAAKIIEVSPSTLRR-IEQGRV 48
                9*****************.999986 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.9e-05      0.07      15      56 ..       7      48 ..       2      65 .. 0.92
   2 ?   -1.4   0.1       1.3   2.3e+03      15      23 ..     160     168 ..     132     195 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.9e-05
                HHHHHHHHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT-- CS
      HTH_37 15 aKaqlalaiaeliekrelsqseaaqllgiaqPkvsrllrgkl 56
                ++ ql + +++ +ek + ++++aa++ +++ + + r+++g++
  KIR60860.1  7 LRFQLGAHLRRAREKADVTTEQAAKIIEVSPSTLRRIEQGRV 48
                57789999******************************9986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.3
                 HHHHHHHHH CS
      HTH_37  15 aKaqlalai 23 
                  + +la  i
  KIR60860.1 160 ERLRLATVI 168
                 444444443 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1    0.0001      0.18      15      39 ..      19      45 ..      12      53 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
      HTH_23 15 ae..GlsvreIAreLgvsrrTvyrwlk 39
                +e    +++++A++  vs++T++r+ +
  KIR60860.1 19 REkaDVTTEQAAKIIEVSPSTLRRIEQ 45
                4456789*****************965 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00041      0.73       1      57 [.      14      69 ..      14      72 .. 0.89
   2 ?    1.6   0.1      0.22   3.9e+02       4      48 ..     149     192 ..     146     195 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00041
      HTH_26  1 kLrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDL 57
                +Lr++  + ++t+ + a+ +++s +tl r+ +g++  ++   L+++ d  g+t ++L
  KIR60860.1 14 HLRRAREKADVTTEQAAKIIEVSPSTLRRIEQGRV-GLKGPALNALLDRYGITDAEL 69
                6999999999************************6.**********99888876665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.22
      HTH_26   4 elmadrgi.tkseLargtgisaatlsrlvkgkpervsldtLdkiCd 48 
                 + m   ++ t  +L+ +t i++a l+r   g    v  + L ++ d
  KIR60860.1 149 VRMERQKLlTEERLRLATVIDEAVLHRQIGGP--EVMQTQLTALLD 192
                 56777888899999999********9988886..666666666655 PP

>> RWP-RK  RWP-RK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.8e-05      0.18      12      33 ..      23      44 ..      17      64 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.8e-05
      RWP-RK 12 slplkeAAksLgvskttLKric 33
                +++ ++AAk ++vs++tL+ri 
  KIR60860.1 23 DVTTEQAAKIIEVSPSTLRRIE 44
                57899***************96 PP

>> HTH_psq  helix-turn-helix, Psq domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00014      0.26      14      43 ..      20      50 ..      15      51 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
     HTH_psq 14 nGk.mSirkAArkYgiPrsTLwrrkrgkysl 43
                +++ +++ +AA++ +++ sTL+r  +g++ l
  KIR60860.1 20 EKAdVTTEQAAKIIEVSPSTLRRIEQGRVGL 50
                566799*****************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.53
# Mc/sec: 1595.52
//
Query:       KIR60861.1  [L=825]
Description: transglutaminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-28   98.8   0.7    2.1e-27   95.8   0.1    2.3  2  Transglut_core   Transglutaminase-like superfamily
  ------ inclusion threshold ------
      0.014   15.3   0.0      0.014   15.3   0.0    3.7  4  Transglut_core3  Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.1   2.3e-31   2.1e-27       2     112 .]     432     547 ..     431     547 .. 0.94
   2 ?    0.7   0.1     0.077   6.9e+02      29      70 ..     698     741 ..     676     753 .. 0.77

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 2.3e-31
  Transglut_core   2 alaeeltagakdplekakaiyewvr..knveys.aprrtpgsrdaeavletgkGncedfaslfvallRalGipaRvvtgylsgeeekeq..svas 91 
                     +l+++l++g +++++k++aiy++++  + ++ys +++ +++++d++++l++++G c+++a++++ l R++GipaRv++g++ g  + ++    ++
      KIR60861.1 432 TLVADLVRGRSTDYDKVRAIYDHFSadNGFTYSlTTKGGTSGQDIVDFLNNKAGFCQQYAAAMAWLVRSAGIPARVAFGFTNGTGRTDEgyVLTN 526
                     5788999******************8888999988888899999**************************************9877766999*** PP

  Transglut_core  92 edaHawvevylegygWvplDp 112
                     ++ Haw+evy++g gWvp+D+
      KIR60861.1 527 RNLHAWTEVYFDGMGWVPFDA 547
                     ********************7 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.077
  Transglut_core  29 veys..aprrtpgsrdaeavletgkGncedfaslfvallRalGi 70 
                     v+y+   +r+++ +++ae ++++  G     a++  +l Ra  +
      KIR60861.1 698 VDYRvrVDRTETPRATAERLVTEAVGEDASAATAVRLLGRAEEL 741
                     4555546688888888999999*************999999765 PP

>> Transglut_core3  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   1.6e-06     0.014      57      97 ..     486     535 ..     476     541 .. 0.88
   2 ?   -2.3   0.5      0.44   3.9e+03       6      22 ..     635     651 ..     625     669 .. 0.47
   3 ?   -1.3   0.2      0.21   1.9e+03       8      51 ..     703     741 ..     693     750 .. 0.41
   4 ?   -0.9   1.4      0.16   1.4e+03       5      55 ..     767     817 ..     763     819 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.6e-06
  Transglut_core3  57 kCLpralalalllrrrgipatlviGvrkedd.........pfaaHAWvev 97 
                       C + a a+a+l r +gipa++ +G+ +  +         + ++HAW+ev
       KIR60861.1 486 FCQQYAAAMAWLVRSAGIPARVAFGFTNGTGrtdegyvltNRNLHAWTEV 535
                      59999*********************998777777888777899***996 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.44
  Transglut_core3   6 pfrlrlarlglarlrar 22 
                      p+ lr+a ++++++r++
       KIR60861.1 635 PALLRMALRRRRAARPA 651
                      22222222222222222 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.21
  Transglut_core3   8 rlrlarlglarlrarlreaprgarpasaeearrlgravraaarl 51 
                      r+ +   ++a++ + ++e     +  ++++a+ + r++ +a +l
       KIR60861.1 703 RVDRTETPRATAERLVTE-----AVGEDASAATAVRLLGRAEEL 741
                      333333333333222222.....333333333444444444333 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.16
  Transglut_core3   5 lpfrlrlarlglarlrarlreaprgarpasaeearrlgravraaarllpgr 55 
                      ++  +r + l+    +++l + +++  +as++ ++r+g+a  ++ r++p r
       KIR60861.1 767 TRTDRRTRLLAAVLPPSVLLRWRTALGNASSRLVARTGDARYRLLRWSPRR 817
                      566777777777777777888888889999**********99999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (825 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 5485.65
//
Query:       KIR60862.1  [L=351]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-64  214.1   0.0    8.7e-64  213.2   0.0    1.4  1  AAA_3            ATPase family associated with various cellul
    1.3e-22   79.4   6.5    3.2e-22   78.2   6.5    1.8  1  AAA_lid_2        AAA lid domain
    1.4e-14   54.3   0.0    2.9e-14   53.2   0.0    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
    7.9e-08   31.7   0.0    1.6e-07   30.6   0.0    1.4  1  MCM              MCM P-loop domain
    1.8e-05   25.2   0.0    7.1e-05   23.2   0.0    2.1  2  AAA              ATPase family associated with various cellul
    0.00022   21.0   0.0     0.0066   16.2   0.0    2.7  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00024   20.9   0.0      0.029   14.1   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
    0.00097   18.6   0.6       0.66    9.3   0.1    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
       0.07   13.8   0.2       0.29   11.8   0.1    2.0  1  Mg_chelatase_C   Magnesium chelatase, subunit ChlI C-terminal
      0.071   13.7   0.0       0.14   12.7   0.0    1.6  1  AAA_18           AAA domain
      0.096   13.1   3.0        2.8    8.3   3.0    2.7  1  AAA_16           AAA ATPase domain


Domain annotation for each model (and alignments):
>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.2   0.0   5.3e-67   8.7e-64       1     130 [.      52     181 ..      52     182 .. 0.99

  Alignments for each domain:
  == domain 1  score: 213.2 bits;  conditional E-value: 5.3e-67
       AAA_3   1 hvllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanllladeinrappktqsalleameerqvtvegethk 99 
                 h+l+e+vPG++kt+l+kala+++d++++riqftpdllPsd++G++v+++++++fef++G+vfanl++ deinra+pktqsalle+meerqvtv+g t++
  KIR60862.1  52 HLLIEDVPGVGKTKLAKALARSIDCSVRRIQFTPDLLPSDVTGVSVYNQETHDFEFRPGAVFANLVVGDEINRASPKTQSALLECMEERQVTVDGVTYQ 150
                 9************************************************************************************************** PP

       AAA_3 100 lpepflvlatqnPieqeGtyplpeaqldrfl 130
                 l++pf+v+atqnPie+eGtyplpeaq drf 
  KIR60862.1 151 LQTPFMVIATQNPIEMEGTYPLPEAQRDRFT 181
                 ******************************6 PP

>> AAA_lid_2  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   6.5     2e-25   3.2e-22       2      72 ..     245     316 ..     244     317 .. 0.94

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 2e-25
   AAA_lid_2   2 atrahlaielgvsgrRadlallraArAlAalegrdyVtpeDvkeaaplVLaHRlr..repeaegetteeivee 72 
                 atr+++ ++lg+s+r a+l llr+ArA AalegrdyV+p+D++++a +VLaHR++   +++  ++tt++iv e
  KIR60862.1 245 ATREAPDLRLGASPR-ATLQLLRTARAVAALEGRDYVLPDDLQALAVPVLAHRIIptADAQLARRTTDAIVAE 316
                 89*************.***************************************888888888999999987 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   1.8e-17   2.9e-14       7     138 .]      58     180 ..      52     180 .. 0.90

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 1.8e-17
                 -SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--...........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEE CS
       AAA_5   7 ppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik..ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggelv 103
                  pG+gK++la+ la+ + ++v  +q+t d+ ++d++g   ++    + +++++++      + ++v DE++ra+++++++Ll  +eer++   +g +++
  KIR60862.1  58 VPGVGKTKLAKALARSIDCSVRRIQFTPDLLPSDVTGVSVYNqeTHDFEFRPGAVF-----ANLVVGDEINRASPKTQSALLECMEERQVT-VDGVTYQ 150
                 69***********************************9999765666677777777.....9****************************9.7888888 PP

                 E---......-EEEEEESS--..-TT-TTHHHHTT- CS
       AAA_5 104 kaknddllerfrviatanpld.rslnelspalrsRf 138
                    +      f+viat np +  +  +l +a r+Rf
  KIR60862.1 151 LQTP------FMVIATQNPIEmEGTYPLPEAQRDRF 180
                 7777......***********999999999999999 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0     1e-10   1.6e-07      58     175 ..      51     165 ..      27     178 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1e-10
                 -EEEEEESSTSTHHHHHHHHHHHSSSEEEEES..SSSSSSHSSSEEEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEES CS
         MCM  58 invllvgdpgtaKsqlLkyveklapravytsg..kgssaagLtaavvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaK 154
                  ++l+   pg++K++l k++++ ++ +v           ++ t   v ++et++f +  Ga+      +++ De+++ + +++sal+E+mE+ ++++  
  KIR60862.1  51 GHLLIEDVPGVGKTKLAKALARSIDCSVRRIQftPDLLPSDVTGVSVYNQETHDFEFRPGAVFAN---LVVGDEINRASPKTQSALLECMEERQVTVD- 145
                 566666679**********99998888754430034556789999999*************8754...7899***********************996. PP

                 SSCEEEEE--EEEEEEE--SS CS
         MCM 155 aGivatLnartsvlaAanpka 175
                  G++++L++   v+a  np++
  KIR60862.1 146 -GVTYQLQTPFMVIATQNPIE 165
                 .9*****************84 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   4.4e-08   7.1e-05       6     130 ..      58     186 ..      53     188 .. 0.79
   2 ?   -3.3   0.0       7.2   1.2e+04      31      57 ..     249     272 ..     230     289 .. 0.65

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.4e-08
                 STTSSHHHHHHHHHHHHTHEEEEEET.TTCS.SSSTTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS.. CS
         AAA   6 ppGtGKTllakavakelgvefleisg.sell.skyvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk.. 99 
                  pG+GKT laka+a++++ ++ +i+  ++ll s++ g s  + +    e +  a     ++ DEi +  ++            +++Ll+ +++ +    
  KIR60862.1  58 VPGVGKTKLAKALARSIDCSVRRIQFtPDLLpSDVTGVSVYNQETHDFEFRPGAvFANLVVGDEINRASPKT-----------QSALLECMEERQVTvd 145
                 6****************999999985378887888887777777665566666654489999******9999...........*************9** PP

                 ......SSTEEEEEEESSGGG.....STHHHHSTTSSEEEET CS
         AAA 100 ......eskvivigatnrpdk.....ldpallrgRfdrkiei 130
                       + +++vi++ n +++     l++a + +Rf+ +i +
  KIR60862.1 146 gvtyqlQTPFMVIATQNPIEMegtypLPEAQR-DRFTARIAM 186
                 *****9888****9999844433333666666.888887765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.2
                 TTTCSSSSTTHHHHHHHHHHHHHHHTS CS
         AAA  31 gsellskyvgesekkirelfkeakeka 57 
                 +++l+   +g+s++ + +l+++a++ a
  KIR60862.1 249 APDLR---LGASPRATLQLLRTARAVA 272
                 45555...7777777777777777665 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.1e-06    0.0066      32     113 ..      49     142 ..      28     150 .. 0.67
   2 ?    0.6   0.0      0.26   4.3e+02      91     118 ..     217     245 ..     207     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.1e-06
      RuvB_N  32 aldhvllyGpPGlGkttlakiiakelgvklkit.sgPvlekagdlaal.ltnleekdvlf......i.....deihrlsraveevlysamedfrl 113
                 a  h+l+   PG+Gkt lak +a+ ++ +++    +P l  ++d++++ + n e++d  f            dei r s++++  l   me+ ++
  KIR60862.1  49 AEGHLLIEDVPGVGKTKLAKALARSIDCSVRRIqFTPDLL-PSDVTGVsVYNQETHDFEFrpgavfAnlvvgDEINRASPKTQSALLECMEERQV 142
                 567*************************997541566664.566666523344444432211111112223477777777777777777777665 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.26
      RuvB_N  91 deihrlsraveev.lysamedfrldivig 118
                 d + rl  +v ev +  a+  +++d+v  
  KIR60862.1 217 DTVRRLIATVREVhVADAVKQYAVDLVTA 245
                 8899**999999835679*******9875 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.019        31      12      45 ..      40      73 ..      29      85 .. 0.81
   2 !   14.1   0.0   1.8e-05     0.029     100     142 ..     120     162 ..     111     171 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.019
                     HHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHH CS
  Sigma54_activat 12 leqikkvaktdlsvlitGesGtGKellaraihea 45
                     ++ + +v   + ++li+   G+GK+ la+a+ ++
       KIR60862.1 40 VRLALAVLLAEGHLLIEDVPGVGKTKLAKALARS 73
                     56666777888999***************99764 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.8e-05
                      ETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEES CS
  Sigma54_activat 100 DeigelplelQekLlrvlqegevervGsskeikvdvriiaatn 142
                      Dei++ ++++Q+ Ll++++e++v+  G + + ++ +++ia+ n
       KIR60862.1 120 DEINRASPKTQSALLECMEERQVTVDGVTYQLQTPFMVIATQN 162
                      9********************************9999997654 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1    0.0004      0.66      10      43 ..      39      71 ..      29     109 .. 0.79
   2 !    7.6   0.0    0.0013       2.2     111     159 ..     118     164 ..     104     178 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0004
  Mg_chelatase 10 eakraleiaaaGgHnlllvGppGsGKtmlakrlp 43
                  + + al +  a gH ll+   pG GKt lak+l+
    KIR60862.1 39 TVRLALAVLLAEGH-LLIEDVPGVGKTKLAKALA 71
                  34557777777666.8999************996 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0013
  Mg_chelatase 111 fLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpc 159
                   + DE+   + k+  +L e +e+++vt+   +++++ p  f+++a+ Np 
    KIR60862.1 118 VGDEINRASPKTQSALLECMEERQVTVDGVTYQLQTP--FMVIATQNPI 164
                   559*************************999988765..9*******96 PP

>> Mg_chelatase_C  Magnesium chelatase, subunit ChlI C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00018      0.29      54      87 ..     253     286 ..     243     290 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00018
  Mg_chelatase_C  54 rlglsaRaydrilkvArTiADLegseeieeehla 87 
                     rlg s Ra+ ++l+ Ar +A Leg++ + +++l+
      KIR60862.1 253 RLGASPRATLQLLRTARAVAALEGRDYVLPDDLQ 286
                     68899*********************99998875 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.8e-05      0.14       6      25 ..      58      78 ..      54     152 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.8e-05
      AAA_18  6 tpGvGKttlakeLskrlgf.g 25
                +pGvGKt lak+L+++  + +
  KIR60862.1 58 VPGVGKTKLAKALARSIDCsV 78
                79************9986642 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0017       2.8      27      66 ..      53      91 ..      35     328 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0017
      AAA_16 27 vllsGesGvGKsslvrellralekdggiflrgkcdqlesa 66
                +l+   +GvGK++l+++l+r++  + +  ++ + d l+s+
  KIR60862.1 53 LLIEDVPGVGKTKLAKALARSIDCS-VRRIQFTPDLLPSD 91
                5666679*************99887.33344444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2260.01
//
Query:       KIR60863.1  [L=945]
Description: leucyl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-54  182.7   0.0    7.9e-54  182.0   0.0    1.4  1  tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
    6.1e-36  123.9   0.0    1.9e-15   56.2   0.0    5.1  4  tRNA-synt_1    tRNA synthetases class I (I, L, M and V)
    2.8e-16   59.3   0.0      7e-13   48.1   0.0    2.5  2  tRNA-synt_1g   tRNA synthetases class I (M)
    4.8e-16   59.1   0.0    1.7e-15   57.3   0.0    1.9  1  Anticodon_1    Anticodon-binding domain of tRNA
  ------ inclusion threshold ------
      0.091   12.1   0.0       0.73    9.1   0.0    2.0  2  tRNA-synt_1e   tRNA synthetases class I (C) catalytic domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.0   0.0   2.2e-57   7.9e-54       1     185 []     293     493 ..     293     493 .. 0.95

  Alignments for each domain:
  == domain 1  score: 182.0 bits;  conditional E-value: 2.2e-57
  tRNA-synt_1_2   1 rnWIGrseGleiefkveeseeklevfttrpdtlfGvtfvalapehplvekl.................aekkkelaafieevkkksesereletke 79 
                    rnWIGrs+G++i+f+ +     ++vfttrpdt+fG+t+++lapeh+lv++l                 a+ +++++a+ + ++ k++ er+++tke
     KIR60863.1 293 RNWIGRSTGAHIDFATDRGP--VRVFTTRPDTIFGATYMVLAPEHELVDALvpaawpdgtrdawtgghASPRAAVEAYRKAAAAKTDVERQADTKE 386
                    8**************99865..****************************99999*****999999999999************************ PP

  tRNA-synt_1_2  80 keGvftglkaihPitgekipiwvanyvlmeygtgavmavPahdqrDfeFakkynlpikqvikpedeekkleeseeayteegilvnsg......efd 169
                    k+Gvf g++a++P+tg +ipi++a+yvl++ygtga+mavPa+d+rD++Fa+ ++lpi + ++p+d+    +   +ayt++g  +ns       +++
     KIR60863.1 387 KTGVFVGAYATNPVTGGQIPIFIADYVLAGYGTGAIMAVPAQDERDWAFAEVFELPIVRTVQPADGF---A--GKAYTGDGPAINSAaperglDLN 477
                    ***************************************************************9964...3..789**********9766666789 PP

  tRNA-synt_1_2 170 glkskeakekiakkle 185
                    gl +++ak++i+++le
     KIR60863.1 478 GLGVADAKAAIIAWLE 493
                    9999999999999875 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.3   2.8e-10     1e-06      22     150 ..      56     168 ..      26     173 .. 0.71
   2 !   56.2   0.0   5.3e-19   1.9e-15     155     351 ..     220     497 ..     205     506 .. 0.88
   3 !   15.6   0.0     1e-06    0.0037     416     440 ..     506     530 ..     502     545 .. 0.85
   4 !   15.6   0.0     1e-06    0.0037     563     589 ..     720     746 ..     714     754 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2.8e-10
  tRNA-synt_1  22 kkefilvdgPPyvtGs.lHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgreefrekvrewkaeyaeeirkq 118
                  +++  + d  Py  G+ lH+Gh l  +  d   ry+rm G +vl+ +G+D  Gl+ e+   ++  ++                 r      +e+++ q
   KIR60863.1  56 AEKLYVLDMFPYPSGAgLHVGHPLGYIGTDCFARYQRMAGRNVLHAMGFDAFGLPAEQYAVQTG-THP----------------RTTTVANIERYKAQ 136
                  566666777788888669*************************************998655442.222................22222334455566 PP

  tRNA-synt_1 119 vkrlGvsvDfdreylTldkeleeavkevfvrl 150
                  ++rlG   D  r   T+d+++   ++++f ++
   KIR60863.1 137 LRRLGLAHDDRRSVATIDTDFYRWTQWIFLQV 168
                  66777777777777777777777777777665 PP

  == domain 2  score: 56.2 bits;  conditional E-value: 5.3e-19
  tRNA-synt_1 155 liyrgkklvnwstklktalselEveykdkk.................................................dalihvafpladkeevklv 203
                  l y ++ +vnw++ l t+l++ Ev     +                                                 ++  h+ f +  ++   + 
   KIR60863.1 220 LAYVSEAPVNWCPGLGTVLANEEVTADGRSdrgnfpvfkrnlkqwmmritaygdrlledldtldwpepiklmqrnwigrSTGAHIDFAT--DRG-PVR 314
                  6688999*****************776666779********************************************555555555555..555.569 PP

  tRNA-synt_1 204 iaTTtPeTllgdtavavnpeldyv...................itkeklilaeallkslvkke.sekkiledergkeLegkevelplvnrkipiiadd 281
                  + TT+P T++g t ++++pe + v                           +ea  k+ + k+ +e++   +e+   ++g ++++p+++ +ipi   d
   KIR60863.1 315 VFTTRPDTIFGATYMVLAPEHELVdalvpaawpdgtrdawtggH-ASPRAAVEAYRKAAAAKTdVERQADTKEKTGVFVGAYATNPVTGGQIPIFIAD 411
                  ***********************9**********9999876532.23334556666666555558889999999999********************* PP

  tRNA-synt_1 282 yvdkeaGtGvVkiaPahdedDyevgkkynlevinildedgtlteea................aefeglkvfdarkkvveelkekgl 351
                  yv +  GtG++   Pa de D++ ++ ++l+++ +++    +  +a                 + +gl v da+ ++++ l+++g 
   KIR60863.1 412 YVLAGYGTGAIMAVPAQDERDWAFAEVFELPIVRTVQPADGFAGKAytgdgpainsaapergLDLNGLGVADAKAAIIAWLEANGH 497
                  *************************************99888888889*************99******************99986 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 1e-06
  tRNA-synt_1 416 iqdWciSRqrwWGhriplfvskete 440
                   +dW +SRqr+WG++ p+ ++++  
   KIR60863.1 506 LRDWLFSRQRYWGEPFPIVYDASGA 530
                  58****************9998765 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 1e-06
  tRNA-synt_1 563 KmSKslgNvidpldvikkygadalRlt 589
                  Km Ksl+Nv+ p+d+  +ygad  R +
   KIR60863.1 720 KMGKSLKNVVTPDDMCAAYGADTFRVY 746
                  9************************87 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   1.9e-16     7e-13       7      89 ..      65     148 ..      59     172 .. 0.86
   2 !    8.4   0.0   0.00022      0.79     324     360 ..     717     753 ..     708     766 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 1.9e-16
                   -B--SS-.--HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEE CS
  tRNA-synt_1g   7 lpYangk.lHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfdkyg 89 
                   +pY++g+ lH+Gh l +i +D+faRy+r+ g++vl+  g D++G p e+ A + g++p+  +  + e++k+++++l++++d+  
    KIR60863.1  65 FPYPSGAgLHVGHPLGYIGTDCFARYQRMAGRNVLHAMGFDAFGLPAEQYAVQTGTHPRTTTVANIERYKAQLRRLGLAHDDRR 148
                   799998658***********************************************************************9854 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00022
                   --------------HHHHHHHH-HHHHHHHHHHHS-T CS
  tRNA-synt_1g 324 egkKlSkSrgvvvkakealerldadllRYylaaeape 360
                   e +K+ kS ++vv+++++   + ad++R y ++ +p 
    KIR60863.1 717 EYGKMGKSLKNVVTPDDMCAAYGADTFRVYEMSMGPL 753
                   668*************************998887775 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   4.8e-19   1.7e-15       7     147 ..     800     909 ..     794     914 .. 0.85

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 4.8e-19
  Anticodon_1   7 elnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkraaqevllevletllrllaPfmPfitEelwqreeeelgkkesiml 104
                   l+k+v  v+ ++e  rfn+a+++l e+ +n+l          rl            ++ +ev+e l+ +laPf+P+++Eelw    ++lg+++s+ +
   KIR60863.1 800 LLHKVVDGVRGDMEGIRFNTAIAKLIEL-TNAL---------TRLP-----------ATPREVAEPLVLMLAPFAPHVAEELW----RRLGHDTSLAY 872
                  69*************************5.8888.........4552...........6789**********************....9********** PP

  Anticodon_1 105 aewpe.kaeelekeleeeevellkeivkairklrselkikpsse 147
                  a++p  +++ l +e     v++    v++++k+r++++++ ++ 
   KIR60863.1 873 ADFPTaDPALLVAE----TVTY---PVQINGKVRGRIEVSADAS 909
                  ****7555443433....6888...**************98765 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.1   3.6e+02      23      54 ..      73     104 ..      67     153 .. 0.75
   2 ?    9.1   0.0    0.0002      0.73     240     280 ..     707     747 ..     694     751 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.1
                   -BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEB CS
  tRNA-synt_1e  23 shlGhaRslvafDilrrilqalgYdvqfvqnv 54 
                    h+Gh   ++ +D ++r+ +++g +v +   +
    KIR60863.1  73 LHVGHPLGYIGTDCFARYQRMAGRNVLHAMGF 104
                   6*********************9999776555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0002
                   EEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHH CS
  tRNA-synt_1e 240 yflhnghlkiegekmsksLknfitikdvlkkfdprqlRlll 280
                   +fl ++ ++ e  km ksLkn++t  d+   + + ++R++ 
    KIR60863.1 707 WFLGEEEVRREYGKMGKSLKNVVTPDDMCAAYGADTFRVYE 747
                   6788888999999*********************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (945 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.50
# Mc/sec: 5683.12
//
Query:       KIR60864.1  [L=239]
Description: glutamine amidotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-33  116.2   0.0    1.6e-33  115.9   0.0    1.0  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
     0.0044   16.8   0.0      0.006   16.4   0.0    1.2  1  DJ-1_PfpI      DJ-1/PfpI family
  ------ inclusion threshold ------
       0.01   15.7   0.0      0.014   15.2   0.0    1.2  1  SNO            SNO glutamine amidotransferase family
      0.015   15.1   0.0      0.019   14.7   0.0    1.1  1  GATase         Glutamine amidotransferase class-I
      0.046   13.4   0.1       0.06   13.0   0.1    1.1  1  Peptidase_S51  Peptidase family S51


Domain annotation for each model (and alignments):
>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.0   4.6e-37   1.6e-33       1     195 [.       7     198 ..       7     199 .. 0.89

  Alignments for each domain:
  == domain 1  score: 115.9 bits;  conditional E-value: 4.6e-37
    GATase_3   1 kiavirlpaisnyt...dldpLeaepevrvrfvpl....kdeslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeei 92 
                 +i++i+++ +s+y+   ++ +L++++++r+  v++    +d++l++ ad+++++Gg+d  q+l ++r  + d  +++a+++g  v+g+C+G+q+LG+++
  KIR60864.1   7 RIVWIYPDLLSTYGdrgNMLILARRAQQRGMPVEVlevrSDQALPATADIYLIGGGEDGPQALGAQRL-RADGGLHRAVAQGSVVFGVCAGYQLLGTSF 104
                 699************************99877766222267777899*********************.99**************************** PP

    GATase_3  93 edpegvegeageveglglLdietefekekltgqvegevelaaegeevkGyEiHsGrtilkekakpllkvkv.ggnngekdGavkksedgnvlGtYlHgl 190
                    +gv     ++ gl lLd++   +  +++g+  g+++      +++G+E+H Grt+l+++++pl++v+       ++dGa ++ ++g++lGtY Hg+
  KIR60864.1 105 FA-KGV-----QCAGLELLDLSSDRGPSRAVGELAGDIDPRLGVPALTGFENHGGRTHLGPGVSPLARVTAgV----GNDGATEGAWRGKLLGTYSHGP 193
                 97.588.....9*************************99976679************************5422....556666666678********** PP

    GATase_3 191 fdnrn 195
                 +++rn
  KIR60864.1 194 ALARN 198
                 99987 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.7e-06     0.006      52     120 ..      44     113 ..       7     124 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.7e-06
                 EEGGGCTCCG-SEEEE--BHHHHHHHHTSH.HHHHHHHHHHHTT-EEEEETTTHHHHHHTTTTTTSEE-- CS
   DJ-1_PfpI  52 aslddvkaaeyDalvlpGGragperlrene.kvvelvkefaekgklvaaICagpqlLaaagvlkgrrvTs 120
                 +  d++ +a+ D+ ++ GG+ gp+ l ++  ++   + +++ +g +v+ +Cag qlL      kg ++++
  KIR60864.1  44 VRSDQALPATADIYLIGGGEDGPQALGAQRlRADGGLHRAVAQGSVVFGVCAGYQLLGTSFFAKGVQCAG 113
                 4455677889****************9876577789*********************9999999988877 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0     4e-06     0.014      23     102 ..      42     123 ..      27     135 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4e-06
                 EEE-SGGGG.CC-SEEEE-SS-HHHHHHHHHHTT-HHHHHHHHHTT.--EEEETHHHHHHCCEETTB..SS-SS--CCEEEET CS
         SNO  23 ktvkrkedl.aevdaliiPGGestamskliertglyedllefvknsekvvlGtCaGlillskelene..lvktlellkvkvkr 102
                 + v++ + l a  d  +i GGe    ++ ++r      l+  v+++  vv+G CaG  ll      +  +   lell+++  r
  KIR60864.1  42 LEVRSDQALpATADIYLIGGGEDGPQALGAQRLRADGGLHRAVAQG-SVVFGVCAGYQLLGTSFFAKgvQCAGLELLDLSSDR 123
                 66776666645679999*****************9999*******9.89***********99987776688889999988766 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   5.3e-06     0.019      13      91 ..      28     107 ..      21     166 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.3e-06
                 HHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT......TTTHHHH...HHHHCTSTS-EEEETHHHHHHHHHTTTE CS
      GATase  13 lvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg......vegkiea...ikearenkiPiLGICLGmQllaiefgrk 91 
                 l++++ ++g+ vev+++ +++        ++d  l+ gG   p+           +a   +++a  ++  ++G+C G Qll+ +f +k
  KIR60864.1  28 LARRAQQRGMPVEVLEVRSDQALP----ATADIYLIGGGEDGPQalgaqrL----RAdggLHRAVAQGSVVFGVCAGYQLLGTSFFAK 107
                 789999999999**9999766655....58999999999999997633322....331223455557999***********9998763 PP

>> Peptidase_S51  Peptidase family S51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.7e-05      0.06      60     134 ..      36     105 ..      17     116 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.7e-05
                    T-EEEE--TTTS-HHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTT-EEEEETHHHHTTSSB-G CS
  Peptidase_S51  60 glevdeLelskdpeeeieeklleadviyvgGGntfrLlkllketgldkllreavqqglvyiGvSAGaivagesie 134
                    g+ v++Le+   + +++      ad+ ++gGG+    +   ++ ++d  l +av+qg v++Gv AG    g+s  
     KIR60864.1  36 GMPVEVLEVR--SDQALPA---TADIYLIGGGEDGPQALGAQRLRADGGLHRAVAQGSVVFGVCAGYQLLGTSFF 105
                    5556666655..4455555...79******************************************888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1674.63
//
Query:       KIR60865.1  [L=415]
Description: ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-19   68.7   0.0    1.4e-18   66.8   0.0    1.9  2  DUF1727         Domain of unknown function (DUF1727)
      1e-14   55.0   0.0    1.4e-12   48.0   0.0    2.1  2  Mur_ligase_M    Mur ligase middle domain
  ------ inclusion threshold ------
       0.12   11.8   0.1       0.22   10.8   0.1    1.4  1  PPR_long        Pentacotripeptide-repeat region of PRORP
       0.15   12.0   0.6        0.3   11.1   0.6    1.4  1  OrfB_Zn_ribbon  Putative transposase DNA-binding domain
       0.54   10.3   3.7       0.15   12.0   0.6    1.6  2  PhnA_Zn_Ribbon  PhnA Zinc-Ribbon


Domain annotation for each model (and alignments):
>> DUF1727  Domain of unknown function (DUF1727)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.6   2.1e+03      57      76 ..      53      72 ..      42      96 .. 0.84
   2 !   66.8   0.0   3.8e-22   1.4e-18       1     110 []     307     404 ..     307     404 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.6
     DUF1727 57 vvvsGeraeDmalRLkyagv 76
                 +vsG+  + +  RL+ a v
  KIR60865.1 53 ALVSGTNGKTTTTRLTTAAV 72
                57999999999999999877 PP

  == domain 2  score: 66.8 bits;  conditional E-value: 3.8e-22
     DUF1727   1 LvkNPvglnetlrllaedkekkellillndraadgtdvsWlwDvdfeklaeskvkkvvvsGeraeDmalRLkyagveeekieieedleealeaekkeee 99 
                 L+kNP+++ e++++ +       +l+ +n+r++dg d+sWl+Dvdf  l+ +   +v+++G+ra+D+a+RL ++gv+ +++++   + ea++    +  
  KIR60865.1 307 LAKNPASWLEAFDMADF----APTLLSINARDPDGLDTSWLFDVDFAPLRGR---QVLITGDRAYDLAVRLDVNGVPFQHVRT---FGEAVR--AVPPG 393
                 79************999....459*************************975...9************************999...889999..78899 PP

     DUF1727 100 tlyilatYtam 110
                 +l ++a+Yta+
  KIR60865.1 394 RLEVIANYTAF 404
                 9********95 PP

>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   3.9e-16   1.4e-12       1     118 [.      55     167 ..      55     178 .. 0.84
   2 !    5.0   0.0    0.0062        22     169     192 .]     246     269 ..     233     269 .. 0.84

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 3.9e-16
                   EESSS-HHHHHHHHHHHHHCTEEEEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHCTTTCCHCBESEEEE---TSTTHHHHSSHHHHHHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvgttnneiglpktlaemekkeaeyavlEvsshglgekrlegllkpdvavitnispdHldfhgtlenyaea 97 
                   v GtnGKTTtt+l+ a++   g v++     n ++g  ++la++    + yavlEv +h l++  le+ ++p+v++++n+s+d ld+ +++   a+ 
    KIR60865.1  55 VSGTNGKTTTTRLTTAAVGVLGRVATNSFGANMPTGHTSALAKAGS--TPYAVLEVDEHYLAQ-VLEA-TEPHVVALLNLSRDQLDRAKEVAMMAQL 147
                   89*******************8776666677899999999988887..***********6665.4555.89**********************9998 PP

                   HHHHHHTSETTCEEEEETTSC CS
  Mur_ligase_M  98 Kaelferlkeegiavinaddp 118
                    +  + ++++   +v naddp
    KIR60865.1 148 WRAALVNHPD-VRVVANADDP 167
                   6655555553.58*******9 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0062
                   EEEEEESSCSCHHHHHHHHHHHHH CS
  Mur_ligase_M 169 eleieipllGkhnvyNalaaiaaa 192
                    +++ ++l+Gk n+ Na+ a+a+a
    KIR60865.1 246 WHKVVLQLPGKVNLGNAATALAVA 269
                   567889***************986 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   6.3e-05      0.22     145     188 ..     106     149 ..      92     161 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.3e-05
                 HHHHHHHHHCT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
    PPR_long 145 leveehlkasgveleEaelaaLLkvsakagredkvYelLhklre 188
                 lev+eh  a+ +e +E+ ++aLL++s ++ +  k  +++ +l +
  KIR60865.1 106 LEVDEHYLAQVLEATEPHVVALLNLSRDQLDRAKEVAMMAQLWR 149
                 79************************998888777777777655 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6   8.3e-05       0.3      28      52 ..     201     223 ..     193     227 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.3e-05
  OrfB_Zn_ribbon  28 SktCseCgsknkealsgrtfkCpnC 52 
                     S  C+eCg++  +  +g+++ C+ C
      KIR60865.1 201 SWVCPECGHTIAR--NGDQWWCSGC 223
                     778**********..*******999 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.6   4.2e-05      0.15      17      29 ..     199     211 ..     198     212 .. 0.84
   2 ?   -3.0   0.1       2.2   7.7e+03      17      25 ..     215     223 ..     214     223 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.2e-05
  PhnA_Zn_Ribbon  17 gallvCpeCahEw 29 
                     ++ +vCpeC+h +
      KIR60865.1 199 DDSWVCPECGHTI 211
                     578*******966 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.2
  PhnA_Zn_Ribbon  17 gallvCpeC 25 
                     g+ + C+ C
      KIR60865.1 215 GDQWWCSGC 223
                     688999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2899.52
//
Query:       KIR60866.1  [L=143]
Description: cell division protein MraZ [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-39  133.6   0.0    2.2e-19   69.2   0.0    2.0  2  MraZ      MraZ protein, putative antitoxin-like
  ------ inclusion threshold ------
        0.1   12.3   0.0       0.13   12.0   0.0    1.1  1  DUF932    Domain of unknown function (DUF932)


Domain annotation for each model (and alignments):
>> MraZ  MraZ protein, putative antitoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   2.4e-23   2.2e-19       1      71 [.       1      70 [.       1      71 [. 0.98
   2 !   62.8   0.0   2.5e-21   2.3e-17       1      66 [.      72     136 ..      72     139 .. 0.94

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 2.4e-23
                CCTTEEEEEB-TTSEEE--CHHHHHTTSCSEEEEEECCSEEEEEEHHHHHHHHHCHHTS-CCCHHHCHHHH CS
        MraZ  1 mfagatevelDakGRlllPaklreeaklekevvviGvsncLeiwpraeWekyeeelaeeslsekaerallr 71
                mf+g+++  lD+kGRl+lPak+r+e+++  +v+++G++ cL ++p+ e++++ ++l + + ++ka+ra  r
  KIR60866.1  1 MFLGTHTPRLDDKGRLILPAKFRDELAGG-VVITKGQDRCLYVFPMPEFQRIADQLRAQPMTNKAARAYSR 70
                9****************************.*************************************9876 PP

  == domain 2  score: 62.8 bits;  conditional E-value: 2.5e-21
                 CCTTEEEEEB-TTSEEE--CHHHHHTTSCSEEEEEECCSEEEEEEHHHHHHHHHCHHTS-CCCHHH CS
        MraZ   1 mfagatevelDakGRlllPaklreeaklekevvviGvsncLeiwpraeWekyeeelaeeslsekae 66 
                 +fa a+    D++GR+++Pa lr++a+l++++vviG s + e+w++a We+y++  +e ++++++e
  KIR60866.1  72 FFASAHDEVPDKQGRVTVPAHLRAYAGLDRDLVVIGASTRVEVWDKAAWEAYLAD-SEDDFADIEE 136
                 689999999**********************************************.8999998876 PP

>> DUF932  Domain of unknown function (DUF932)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.5e-05      0.13     129     202 ..      45     125 ..      36     130 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.5e-05
      DUF932 129 feefeeeaealaavklteaeaeafaeavlpepkeaaeerkk.ralaalalrfeat.......edrgadlesvkgTaWgllna 202
                 ++ef+ +a++l+a ++t+++a+a+ + ++++ +++  +++   ++ a+ + +  +        + ++++e + + aW ++ a
  KIR60866.1  45 MPEFQRIADQLRAQPMTNKAARAYSRVFFASAHDEVPDKQGrVTVPAHLRAYA-GldrdlvvIGASTRVEVWDKAAWEAYLA 125
                 789***********************999998888877776566777777777.3333444577888888899999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 977.41
//
Query:       KIR60867.1  [L=212]
Description: hypothetical protein TK50_23880 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-05   24.8   0.1    2.7e-05   23.8   0.1    1.5  1  DivIC        Septum formation initiator
     0.0011   19.2   6.9     0.0021   18.4   6.9    1.6  1  RskA         Anti-sigma-K factor rskA
     0.0045   16.6   1.9     0.0062   16.1   1.9    1.1  1  MscS_porin   Mechanosensitive ion channel porin domain
  ------ inclusion threshold ------
      0.054   13.3   0.0      0.089   12.6   0.0    1.3  1  SP_C-Propep  Surfactant protein C, N terminal propeptide
      0.054   13.5   0.2      0.086   12.9   0.2    1.2  1  DUF1043      Protein of unknown function (DUF1043)
      0.055   13.7   0.1      0.093   13.0   0.1    1.3  1  DUF4381      Domain of unknown function (DUF4381)
       0.11   12.3   0.1       0.18   11.6   0.1    1.4  1  LapA_dom     Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   1.1e-08   2.7e-05      26      75 ..     136     183 ..     107     187 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.1e-08
                 HHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXXXXXXXXXXX CS
       DivIC  26 iaalqaelaklkaeneeLeaevkdLksdedyieerARselglvkpgEtvy 75 
                 +++lq++ akl  ++++L++e++d  + +  +++ AR +lg+v   E  y
  KIR60867.1 136 LERLQQQQAKLDVDQQQLDKEIADA-KAPGNLTATAR-RLGMVEAEEPAY 183
                 578999999999999**********.6**********.*****9999776 PP

>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   6.9   8.4e-07    0.0021      11      86 ..      74     167 ..      16     201 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.4e-07
                 HTT-X...........................XXXXXXXXXXXXXX...........................XXXXXXXXXXXXXXXXXXX...X CS
        RskA  11 aalaatpqaaaaaaaaaaapppaaapaararrlaaaaAaalllvlg.................qlavasaaldplrqsaaqaeavvavlaap...d 86 
                 +++++t++a+aaa++ ++ + ++++p   +r  a+ +A++l+lv+g                 +l ++++++++l+ +++q ++ +a   ap    
  KIR60867.1  74 ERTGTTERARAAATPSPRLRVAPPPPVSVPR--APFVALILVLVVGgvlgillvntkinensfRLERLQQQQAKLDVDQQQLDKEIADAKAPgnlT 167
                 4666666666666666666555555555554..44445555555555777******9999998888888888888888888888888888883331 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.9   2.4e-06    0.0062     105     151 ..     126     172 ..     124     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.4e-06
  MscS_porin 105 nsqlvelqtrperaqqqltearqrlqeirnrLnstaaagealsqaqr 151
                 n++++e + r+er+qqq+++    +q++ +++++ +a+g+  + a+r
  KIR60867.1 126 NTKINENSFRLERLQQQQAKLDVDQQQLDKEIADAKAPGNLTATARR 172
                 899************************************96666655 PP

>> SP_C-Propep  Surfactant protein C, N terminal propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.5e-05     0.089      20      64 ..      85     130 ..      77     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.5e-05
  SP_C-Propep  20 saasrgrlri.pccplnlkrllivvvvvvlvvvvvlgallmglhms 64 
                  +a++  rlr+ p  p+ + r   v +++vlvv  vlg ll+  ++ 
   KIR60867.1  85 AATPSPRLRVaPPPPVSVPRAPFVALILVLVVGGVLGILLVNTKIN 130
                  567888999757889*************************987765 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   3.3e-05     0.086       2      52 ..     111     158 ..     108     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.3e-05
     DUF1043   2 liglvvGiiiGalilrltnsklkkqkklekelekakaeleeqkqeledHfa 52 
                 + +lvvG ++G+l++    +k+++++   ++l++++a+l+  +q+l++ +a
  KIR60867.1 111 ILVLVVGGVLGILLVN---TKINENSFRLERLQQQQAKLDVDQQQLDKEIA 158
                 4567888888877665...577778888889**************998766 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   3.6e-05     0.093       8      81 ..      95     175 ..      93     185 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.6e-05
     DUF4381   8 lPepvswwPpapGwwlllaalll.llllvlalwllrrrkrn........rreAlreLaalr.adeadakellaalselLkrval 81 
                 +P+p+  +P ap   l+l++++  +l ++l+     + + n        +++A   +++ + ++e  +++++ +l +  +r+ +
  KIR60867.1  95 APPPPVSVPRAPFVALILVLVVGgVLGILLVNT---KINENsfrlerlqQQQAKLDVDQQQlDKEIADAKAPGNLTATARRLGM 175
                 46777799****988888443333332333322...333333445666777788888888888888888888888888888766 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   7.1e-05      0.18      21      62 ..     108     149 ..     105     159 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.1e-05
    LapA_dom  21 llllvafgiGallgwllslwsylrlrrelrrlkkkikkleke 62 
                 + l++++++G +lg+ll   ++  +  +l rl+++ +kl  +
  KIR60867.1 108 VALILVLVVGGVLGILLVNTKINENSFRLERLQQQQAKLDVD 149
                 679999999999999999999999********9999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1107  (0.0617435); expected 358.6 (0.02)
Passed bias filter:                      826  (0.0460706); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1446.58
//
Query:       KIR60868.1  [L=740]
Description: penicillin-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-73  246.8   0.0    3.4e-73  246.5   0.0    1.1  1  Transpeptidase   Penicillin binding protein transpeptidase do
    5.5e-18   65.9   0.1    1.2e-16   61.6   0.1    2.2  1  PBP_dimer        Penicillin-binding Protein dimerisation doma
    0.00061   19.5   0.0      0.018   14.6   0.0    2.3  1  Beta-lactamase2  Beta-lactamase enzyme family
  ------ inclusion threshold ------
      0.048   13.6   0.1       0.38   10.7   0.0    2.4  2  Plectin          Plectin repeat


Domain annotation for each model (and alignments):
>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.5   0.0   7.6e-77   3.4e-73       1     305 [.     411     716 ..     411     717 .. 0.95

  Alignments for each domain:
  == domain 1  score: 246.5 bits;  conditional E-value: 7.6e-77
                     EEEEEEETTT-BEEEEEEESE-TTTHHCC.TCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS.ECTCCCC-SSSSE CS
  Transpeptidase   1 gaavvldaktgevlamaskpsydpnakvg.kneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqsikdweqdnkgseg 94 
                     g+a+vld  tgevla as p+y+  + ++ + ++    a++ ++ PGS+ K +t  aal++gvi+pd+ l+ ++  ++g+++++d + +n   + 
      KIR60868.1 411 GVAIVLDVPTGEVLAQASHPTYNAAKPQEsEPTDREDAATSFVVDPGSIHKAITFGAALQEGVITPDTALPIPDTIVRGDTTFRDTHPAN--GRR 503
                     6899*******************9999997777778888888***********************************************8..678 PP

                     EEHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--..B--SSHHHHHHHHHTTT..SBB-HHHHHHHHHHHHTTTEEE-- CS
  Transpeptidase  95 itlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaG..vptrkwlegatisfgiG..ltvtplqlaqayaaiangGklvkP 185
                     ++l   l++Ssn+++ ++a+klg+d+l +y k+fglG++tg + pge +G  +p ++w+++++ s+ iG  + +tplq+a ayaaian+G++v+P
      KIR60868.1 504 MSLPGMLAYSSNVGTIEIADKLGPDRLIDYQKRFGLGQPTGEGIPGEASGrlLPAQSWSGSSYGSVPIGhsVDATPLQMAAAYAAIANNGTYVQP 598
                     9*************************************************95566699************************************* PP

                     BSEEEEEECTT.EEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCG.TCTTS--EEEEEEEEECSSSTTSEEEEEEEEEEEEEESTTS-S CS
  Transpeptidase 186 hlvkaivdpdg.vrkvkpkelnklpisketaekvkeglkgvvsrgsgtata.avegykvagKTGTAevagkkgngkkegakiswfvgyapadnpk 278
                     hl+k++ + ++ +r+  + +  + + s+ +a+ ++++l+ v++ + +t+ a av+gy+vagKTGT+  + +++++  e   +++f+g+apadnp+
      KIR60868.1 599 HLIKEVISGKDgSRTPGKAPVTRPVLSPANAKALRTMLEAVTTVDGATGLAaAVPGYRVAGKTGTGIRYVDGKQQPGE---VGSFIGMAPADNPR 690
                     *****9886666999999999************************8898889*****************988888655...79************ PP

                     EEEEEEECTCSSSSSCCHHHHHHHHHH CS
  Transpeptidase 279 yavavlieqpkeaaggkaaapiakkil 305
                     ++vav + +p+  +gg++aap++++i+
      KIR60868.1 691 FVVAVFVWSPG-GGGGAVAAPAFRDIM 716
                     ***********.**************9 PP

>> PBP_dimer  Penicillin-binding Protein dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.1   2.6e-20   1.2e-16       2     169 ..     214     358 ..     213     364 .. 0.90

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 2.6e-20
                 .EE----EE-TTS-EEEEEEEEEEEEEEESSS-HHHHHHHHHHHHHHC.HHHTTS-HHHHHHHHCCCCTSSTTSCECCCCCEECHHHCCCHHHHHCSTT CS
   PBP_dimer   2 ipapRGeIyDrngrlLAtnrpsytltitpsklkkkkalekikklakll.eseenldderleelalkknsykaykpvviaediseeevarikenakdlpG 99 
                 +papRG IyDr+g +LA+++++  + ++p+ + + +++  ++ l+ ll +   +  +er++   +  +++k++++  +a+ ++  ++++i +   dl G
  KIR60868.1 214 LPAPRGAIYDRTGAPLANSVEARYVFADPTRVRDRTET--ARALSPLLgR-PASELAERMKP--RTLENGKPSQFEYLARGVDVPTAKKIVAL--DLYG 305
                 69********************************9977..9*******55.44444578888..99999*********************965..677* PP

                 -EEEEEEEEEETTTSTTHHHH-EEEEC-HHHHHCCCCHTCCTTCEEEESHHHHHTHHHHHECCCEEEEEE CS
   PBP_dimer 100 inievepkRyYpkgelaahvlGyvgkiteeelekykekgyssgdliGksGlEkqyEeeLrGkkGkrqvkv 169
                 i +  +++R  p g+laa+++G +++                 d++G +GlE+ y++ LrG+ G r ++ 
  KIR60868.1 306 IGVHRDERREVPGGDLAANLIGFTSQ-----------------DMVGLEGLEARYDDLLRGEIGRRVYEA 358
                 **********************8765.................6*********************99986 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.1e-06     0.018      18     201 ..     457     694 ..     448     695 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.1e-06
                      GGGGHHHHHHHHHHHHHCTSTGTT-EEEGGHHHHTSSSTSGGGSTTSEEEHHHHHHHHHHTT-HHHHHHHHHHHTHHHHHHHHHHCTHTTSB-- CS
  Beta-lactamase2  18 aStiKvpillalleavlegklslderltltaedivggsgilqklpgktlslrdlltlmiavSDNtAtnlLidrlgleavnawlkelglretrlr 111
                      +S+ K        +a++eg + +d+ l++ +  iv g+ +++++++ +   r  l  m+a+S N+ t  + d+lg++++ ++ k+ gl + + +
       KIR60868.1 457 GSIHKAITF---GAALQEGVITPDTALPIPD-TIVRGDTTFRDTHPAN-GRRMSLPGMLAYSSNVGTIEIADKLGPDRLIDYQKRFGLGQPT-G 544
                      566665555...4555679999*****9986.5888888898776443.3455678999**************************9997665.5 PP

                      SHTT................................CCHHHTTSSTTEE-HHHHHHHHHHHHHTTSSHHH....................HHHH CS
  Beta-lactamase2 112 rklp................................dleaadkdkrntttardlarllealargellspe....................elle 153
                      +  p                                ++ aa++   n  t  +  +l+++++ g+  s++                     +le
       KIR60868.1 545 EGIPgeasgrllpaqswsgssygsvpighsvdatplQMAAAYAAIANNGTYVQ-PHLIKEVISGKDGSRTpgkapvtrpvlspanakalrTMLE 637
                      56677899999999999999888888877777777755555555555555543.3445555554444444455544444444446655555555 PP

                      HHHT-STTTTTTTTTTTTSEEEEEEEE......ETTEEEEEEEE...EE.TTEEEEEE CS
  Beta-lactamase2 154 ilsnqqfrdrlaaglpegvrvahKtGe......ldgvrhdvGiv...ya.dgrpyvva 201
                      ++   +  ++laa +p g+rva KtG+       +++ ++vG +    + d++++vva
       KIR60868.1 638 AVTTVDGATGLAAAVP-GYRVAGKTGTgiryvdGKQQPGEVGSFigmAPaDNPRFVVA 694
                      5666777788888877.**********8888774444444443222123366666666 PP

>> Plectin  Plectin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.5e-05      0.38       7      38 ..     448     480 ..     447     481 .. 0.96
   2 ?   -0.6   0.0      0.29   1.3e+03      14      23 ..     497     506 ..     496     507 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.5e-05
     Plectin   7 aaTGGiiDPvtger.lsveeAvkrGlldeetal 38 
                 aaT +++DP + ++ ++   A++ G++ ++tal
  KIR60868.1 448 AATSFVVDPGSIHKaITFGAALQEGVITPDTAL 480
                 8************99****************96 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.29
     Plectin  14 DPvtgerlsv 23 
                 +P++g+r+s+
  KIR60868.1 497 HPANGRRMSL 506
                 69*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 5573.83
//
Query:       KIR60869.1  [L=507]
Description: UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-38  132.2   0.0      3e-38  131.7   0.0    1.2  1  Mur_ligase_M  Mur ligase middle domain
    6.6e-23   80.8   0.8    5.9e-21   74.5   0.0    3.2  3  Mur_ligase_C  Mur ligase family, glutamate ligase domain
    1.8e-12   47.4   5.8      3e-12   46.7   0.7    3.5  3  Mur_ligase    Mur ligase family, catalytic domain
  ------ inclusion threshold ------
       0.99    9.4   7.1        2.8    7.9   2.1    3.5  2  ADH_zinc_N    Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.7   0.0   6.8e-42     3e-38       1     191 [.     123     320 ..     123     321 .. 0.90

  Alignments for each domain:
  == domain 1  score: 131.7 bits;  conditional E-value: 6.8e-42
                   EESSS-HHHHHHHHHHHHHCTEEEEETTC...............SS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHCTTTCCHCBESEEEE---TS CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvg...............ttnneiglpktlaemekkeaeyavlEvsshglgekrlegllkpdvavitnisp 82 
                   +TGt GKT+t++l+++ l++ag+v+g++g               tt+++++l+++la +++ +++++v+Evssh+l+ +r+ g ++++v+  tn+++
    KIR60869.1 123 ITGTAGKTSTAYLVESGLRAAGHVTGLIGtvetrlgdlvvdsvrTTPEATDLHAMLAAARERGVTALVMEVSSHALAMGRVGG-VRFAVGGYTNFGS 218
                   8********************88888888888***************************************************.************* PP

                   TTHHHHSSHHHHHHHHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTS.ECEEEEEEEEETTEEEEEEEEETTEEEEEEESSCS CS
  Mur_ligase_M  83 dHldfhgtlenyaeaKaelferlkeegiavinaddpyakelikklkkakvkvvtfglekea.edlraknieeksegteiellevkggeleieipllG 178
                   dHldfh +  +y++aKa+lf++    ++ v+n+d+    +l++  + a   +v+++ +++  ++++a+++  +   ++++ + + g ++   ++l+G
    KIR60869.1 219 DHLDFHADSADYFAAKAQLFDGRC--AVEVLNHDES---ALRALYTPA---TVSYSAAGDPtATWYATDVDGEGYAQRFTAHGPGGLTVPAGVALPG 307
                   ********************9655..69********...777777777...78888887763445566999987888886776666777799***** PP

                   CHHHHHHHHHHHH CS
  Mur_ligase_M 179 khnvyNalaaiaa 191
                   +hnv+Nal+aiaa
    KIR60869.1 308 RHNVANALLAIAA 320
                   ***********98 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.2   5.5e+03      19      42 ..      49      73 ..      45      82 .. 0.72
   2 !   74.5   0.0   1.3e-24   5.9e-21       1      90 [.     341     426 ..     341     427 .. 0.96
   3 ?    3.0   0.0     0.026   1.2e+02      28      55 ..     450     477 ..     443     483 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.2
                  E.T--SHHHHHHHHHHHHHHSSSSE CS
  Mur_ligase_C 19 D.yahnpdslsaalkalreiapdkr 42
                  D ya+ p++ +++ ++++  a+++ 
    KIR60869.1 49 DlYAALPGARRHGAEFAAAAAAAGA 73
                  7788888888888887776665554 PP

  == domain 2  score: 74.5 bits;  conditional E-value: 1.3e-24
                   CTTSSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEEESS-TTSTHHHH CS
  Mur_ligase_C   1 vkgRlevvgeadgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvvlgdypraedsiaa 90 
                   v+gRle+v+ a+ v+ ++Dyah  d++ aal+alre+ +++rli+v g+gg+   r+r +++e+g++a++ ad+++v++d+pr+e+++a+
    KIR60869.1 341 VPGRLELVSAAGPVRGVVDYAHKTDAIVAALAALREL-SAGRLICVIGAGGD---RDRGKRPEMGAAAARGADVVLVTDDNPRTEEPGAI 426
                   79***********************************.569***********...***************9999************9875 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.026
                   HHHHHHHHHHSSSSEEEEEEEESTT.CC CS
  Mur_ligase_C  28 saalkalreiapdkrlilvfgpggelge 55 
                   +aa++ +  +a+ + +++v+g g e+g+
    KIR60869.1 450 RAAIDEAVRLAAPGDVVAVLGKGHERGQ 477
                   56666666666789*******9988654 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.7   6.6e-16     3e-12       2      88 .]      35     111 ..      34     111 .. 0.97
   2 ?   -0.6   0.0      0.38   1.7e+03      33      44 ..     179     190 ..     119     206 .. 0.65
   3 ?    1.0   0.1      0.12   5.4e+02      35      70 ..     403     427 ..     388     500 .. 0.73

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 6.6e-16
                 EEEESTTSCCHHHHHHHHHHTTSEEEEEESSHCHHHTT-EEEES-HGGGGEE-TS-TTCHHHHHHHHTTEEEEEHHHHHHHHHHCCE CS
  Mur_ligase   2 ihfigidgrgmsagalflalkGykvdGsdfieslialGaaavvghdaanivvssiskdnpeleaakepgipvesraeaLaelaarfy 88 
                 +++++  ++++ +g+l++al+G++ +G++f++ + a+Ga+a++++ a+           p ++aa+ p + v +++++L++la++ y
  KIR60869.1  35 VTGVTHASQEVRPGDLYAALPGARRHGAEFAAAAAAAGAVAALTDPAG----------APAVAAAGLPALVVPDPRAVLGALASAVY 111
                 799*********************************************..........*************************9865 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.38
                 HCHHHTT-EEEE CS
  Mur_ligase  33 eslialGaaavv 44 
                 + ++++G++a+v
  KIR60869.1 179 AAARERGVTALV 190
                 235666666655 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.12
                 HHHTT-EEEES-HGGGGEE-TS-TTCHHHHHHHHTT CS
  Mur_ligase  35 lialGaaavvghdaanivvssiskdnpeleaakepg 70 
                 + a+Ga +v++ d++           p  e+ ++ +
  KIR60869.1 403 AAARGADVVLVTDDN-----------PRTEEPGAIR 427
                 778888888888777...........3333333333 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.43   1.9e+03      48      48 ..     176     176 ..     115     228 .. 0.58
   2 ?    7.9   2.1   0.00063       2.8      30      93 ..     403     474 ..     314     492 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.43
                 H CS
  ADH_zinc_N  48 e 48 
                 +
  KIR60869.1 176 A 176
                 2 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00063
                 HHHTTESEEEET......TTCH....HHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSS CS
  ADH_zinc_N  30 akklGadeviny......kead....lverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkg 93 
                 a+  Gad+v+ +      +  +      e ++ +     +  ++e++G  a++++a++l++pg  ++v G g++
  KIR60869.1 403 AAARGADVVLVTddnprtE--EpgaiRAEVLAGAYAAATPARIVEVAGRRAAIDEAVRLAAPGDVVAVLGKGHE 474
                 4445777777774444331..13333333444444555577799**************************8554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3574.80
//
Query:       KIR60870.1  [L=466]
Description: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-42  145.1   0.0    3.3e-42  144.7   0.0    1.2  1  Mur_ligase_M  Mur ligase middle domain
    1.8e-18   66.6   0.4    8.3e-18   64.4   0.0    2.3  3  Mur_ligase_C  Mur ligase family, glutamate ligase domain
    1.5e-11   44.5   0.7    1.6e-10   41.1   0.2    2.7  2  Mur_ligase    Mur ligase family, catalytic domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.7   0.0   5.6e-46   3.3e-42       2     192 .]     109     295 ..     108     295 .. 0.95

  Alignments for each domain:
  == domain 1  score: 144.7 bits;  conditional E-value: 5.6e-46
                   ESSS-HHHHHHHHHHHHHCTEEEEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHC.TTTCCHCBESEEEE---TSTTHHHHSSHHHHHHH CS
  Mur_ligase_M   2 TGtnGKTTtteliaailekagkvigtvgttnneiglpktlaemekkeaeyavlEvsshglge.krlegllkpdvavitnispdHldfhgtlenyaea 97 
                   TG++GKTTt++lia++ ++ g +++  g++nne+g p t ++++  +++++vlE +++g+g+ + l+++++p++ v++n++ +Hl+++g++en+a a
    KIR60870.1 109 TGSSGKTTTKDLIAQLTARLGPTVAPPGSFNNELGHPWTALQADA-DTRFLVLEKGARGVGHvRYLCEVVPPRISVVLNVGVAHLGEFGSVENIALA 204
                   ********************************************9.*************************************************** PP

                   HHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEEEEESSCSCHHHHHHHHHHHHH CS
  Mur_ligase_M  98 KaelferlkeegiavinaddpyakelikklkkakvkvvtfglekeaedlraknieeksegteiellevkggeleieipllGkhnvyNalaaiaaa 192
                   K el+e+l+++g+av+naddp    + ++++++ ++vv++g++++a d+ra +++ +  g    +l +++g++ ++++l+G+h+v+N laa+a+a
    KIR60870.1 205 KGELVESLPADGLAVLNADDP---LVDAMAARTAARVVRYGEAAHA-DVRAVDVTLDGRGRAAYTLVTPEGSAAVRLGLTGRHQVSNSLAAAAVA 295
                   *********************...888888888888*********9.79999***9999988855547************************996 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   6.7e+03      63      75 ..      88     100 ..      83     128 .. 0.49
   2 ?   -2.9   0.0       1.4   8.6e+03      60      80 ..     223     243 ..     221     251 .. 0.72
   3 !   64.4   0.0   1.4e-21   8.3e-18       3      80 ..     318     397 ..     315     404 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
                   HHHHHHCCHSSEE CS
  Mur_ligase_C  63 efgrlasaladsl 75 
                    +grla a++d+l
    KIR60870.1  88 AMGRLARAVVDRL 100
                   3444444444432 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.4
                   THHHHHHHHCCHSSEEEEEES CS
  Mur_ligase_C  60 fhdefgrlasaladslvvlgd 80 
                   ++++++++a++ a+++v +g+
    KIR60870.1 223 DDPLVDAMAARTAARVVRYGE 243
                   567888888888888876654 PP

  == domain 3  score: 64.4 bits;  conditional E-value: 1.4e-21
                   TSSEEEEETTTEEEEEE.T--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSE.EEEEES CS
  Mur_ligase_C   3 gRlevvgeadgvtvidD.yahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasalads.lvvlgd 80 
                   +R++v+ + dgvtvidD y++np+s+  al+al+ +  ++r ++v+g ++elge +r+ h e+grla++l ++ l+v+g+
    KIR60870.1 318 RRMDVFERPDGVTVIDDsYNANPASTAVALRALAGMRGAGRAVAVLGYMAELGEYERQGHLEVGRLAAELGVDrLLVVGE 397
                   9**********************************************************************998888765 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.2   2.7e-14   1.6e-10       5      49 ..      30      74 ..      29      96 .. 0.84
   2 ?   -0.2   0.0      0.21   1.3e+03      62      83 ..     291     312 ..     270     314 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 2.7e-14
                ESTTSCCHHHHHHHHHHTTSEEEEEESSHCHHHTT-EEEES-HGG CS
  Mur_ligase  5 igidgrgmsagalflalkGykvdGsdfieslialGaaavvghdaa 49
                +  d+r+ ++galf+a +G+kvdG+d+++ ++a+Ga+av+g ++ 
  KIR60870.1 30 VEFDSRKAGPGALFVAFPGEKVDGHDYAAAAVAAGAVAVLGTREV 74
                5689*************************************9987 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.21
                 HHHHHHHTTEEEEEHHHHHHHH CS
  Mur_ligase  62 eleaakepgipvesraeaLael 83 
                   + a+e+g+p+ ++a+aL+el
  KIR60870.1 291 AAAVARELGMPLAELAAALGEL 312
                 5567899999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3312.11
//
Query:       KIR60871.1  [L=378]
Description: phospho-N-acetylmuramoyl-pentapeptide-transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-34  118.9  11.4    1.9e-34  118.9  11.4    2.6  3  Glycos_transf_4  Glycosyl transferase family 4
    3.1e-06   26.4   4.5    1.3e-05   24.4   4.5    2.2  1  MraY_sig1        Phospho-N-acetylmuramoyl-pentapeptide-transf


Domain annotation for each model (and alignments):
>> Glycos_transf_4  Glycosyl transferase family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.25   2.2e+03      63      72 ..      55      64 ..       4      83 .. 0.61
   2 !  118.9  11.4   2.1e-38   1.9e-34       3     158 ..      92     295 ..      90     297 .. 0.92
   3 ?    1.4   1.6     0.031   2.8e+02      24      76 ..     295     358 ..     292     366 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.25
  Glycos_transf_4 63 lilavlltll 72
                      ++++l t++
       KIR60871.1 55 GVVFILATVI 64
                     3333333333 PP

  == domain 2  score: 118.9 bits;  conditional E-value: 2.1e-38
  Glycos_transf_4   3 lllltillilllGflDDv........lglkarlKlilqilaalililtld..................lslttlgllltqvlielglilavllt 70 
                      +ll ++++ +++Gf+DD+         gl++r Kl++qil+ + + +++                   +++ttl+++    +++++ i av+++
       KIR60871.1  92 VLLGLMVFSGAVGFIDDFlkvrkrnsGGLNKRGKLAGQILVGAAFGVVALyfpssmtdasgaatntetVGATTLSFIRDIPALDVTKIGAVVIF 185
                      678889999********9777777766*************999987777779999999999998888888888888888999************ PP

  Glycos_transf_4  71 llvivgvtNavNliDGldGlaagvsiiialalvvla......................avdgrsellllalallgallGfllfNrypAkvFmGD 142
                      ++v++++tN vNl+DGldGla+g s+++++a++++a                       v++  e++l+a a +ga++Gfl++N+ pA++FmGD
       KIR60871.1 186 IFVVMAATNGVNLTDGLDGLATGASVMVLAAYALIAfwqyrhwcadpsytanpdnycyTVRDPLEIALIAGAAAGACVGFLWWNTSPARIFMGD 279
                      *******************************************************997778********************************* PP

  Glycos_transf_4 143 sgslflGlvlavlail 158
                      +g+l lG+++a +a+ 
       KIR60871.1 280 TGALGLGGLIAGMAMS 295
                      ***********99975 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.031
  Glycos_transf_4  24 karlKlilqilaalililtldlslttlglllt..........qvlielglilav.lltllvivg 76 
                      + r+ l+l i+  l++i+t+++ ++ +++ +t          q+ +el  +  v +++ ++i++
       KIR60871.1 295 STRTILLLPIIGGLFVIITMSVVIQIISFRTTgkrvfrmsplQHHFELAGWSEVnIVVRFWIIA 358
                      5666688999999999999996666666666655666667776777776666652445566654 PP

>> MraY_sig1  Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   4.5   1.5e-09   1.3e-05       1      13 []      47      59 ..      47      59 .. 0.98

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.5e-09
   MraY_sig1  1 KkGTPTMGGvlIi 13
                KkGTPTMGGv++i
  KIR60871.1 47 KKGTPTMGGVVFI 59
                9***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2737.49
//
Query:       KIR60872.1  [L=368]
Description: UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-35  121.8   0.0    5.6e-34  117.2   0.0    2.1  2  Glyco_transf_28  Glycosyltransferase family 28 N-terminal dom
    1.2e-33  116.5   0.0    1.6e-33  116.0   0.0    1.2  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
    4.3e-06   26.8   0.3    0.00018   21.6   0.1    2.5  2  Glyco_transf_4   Glycosyltransferase Family 4
    9.5e-05   22.9  18.0    0.00014   22.4   0.5    3.6  3  Glyco_trans_4_4  Glycosyl transferase 4-like domain


Domain annotation for each model (and alignments):
>> Glyco_transf_28  Glycosyltransferase family 28 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.0   1.2e-37   5.6e-34       1     138 [.       7     146 ..       7     147 .. 0.98
   2 ?    2.4   0.2     0.032   1.5e+02       1      34 [.     197     234 ..     197     238 .. 0.77

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 1.2e-37
                      EEEEE-SSHHHHHHHHHHHHHHHCTT-EEE..EEEETCCCHHHHHHCCT-EEEE---GHCTT..CHHHHCCHHHHHHHHHHHHHHHHHHHHCCC CS
  Glyco_transf_28   1 ivllggGTgGhvfPalAlakeLkkegheVr..ylgtkrgleerlveeaglefepiageklrrklspknlkeilkvlkavvkakkilkeakpdav 92 
                      +vl ggGTgGh++P lA+a+ L++ ++ Vr   lgt++gle++l++ ag+ +++i++ +l+r+   + ++++ + +ka ++a k++ e ++d+v
       KIR60872.1   7 VVLCGGGTGGHIYPLLAFADCLRRHDPGVRitCLGTPKGLENELIPPAGYDLRQIPAYQLPRSVNMSLVRTPDRMWKAARAAGKVIDEVRADVV 100
                      799******************************************************************************************* PP

                      CCCCCCCCHCCCCCHCCCTTHCCCCCHCTS-ECCCCCCCCC-SCCC CS
  Glyco_transf_28  93 vgtggyvslpaviaaplaripviihEqnaipglanktlsrtatkva 138
                      vg+ggyvs+p ++aa+++  p++ihE n  pg an++  ++  +va
       KIR60872.1 101 VGFGGYVSVPGYLAAWRRELPIVIHEVNVPPGVANRLGMKFTSNVA 146
                      ****************************************999987 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.032
                      EEEEE-SSHHHHHHHHHH...HHHHHCTT-EEE.EEEE CS
  Glyco_transf_28   1 ivllggGTgGhvfPalAl...akeLkkegheVr.ylgt 34 
                      +++++gG+ G   ++lA+   akeL++ g++V   +g+
       KIR60872.1 197 VLFVAGGSQGARSINLAVagaAKELARHGVQVLhVMGA 234
                      6799******9888888733359999999999756665 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.0   0.0   3.6e-37   1.6e-33       1     164 [.     197     355 ..     197     358 .. 0.91

  Alignments for each domain:
  == domain 1  score: 116.0 bits;  conditional E-value: 3.6e-37
                      -EEEEE-SSSHHHHHCCCTSHHHHHHHHHHHHCHHHCCT-E.EC---STT-TTTTCEEEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHHTT- CS
  Glyco_tran_28_C   1 tilVtGGSqgaeaLnelvlselkllelksrelqvlhqtGkr.eleevkikveeltlkvevfefidkmaeaikaadLvIsRAGagtiaEllalgk 93 
                      +++V GGSqga+ +n +v +++k+l+ ++  +qvlh +G r e  +++++++    ++ ++++  +m+  ++aadL+++R+Ga+t+aE++a+g+
       KIR60872.1 197 VLFVAGGSQGARSINLAVAGAAKELARHG--VQVLHVMGARnEPVPIPSDLP---VPYVTLPYLSQMEIGYAAADLMLGRGGAMTCAEVAAIGL 285
                      58**************************5..********8855556666544...45889********************************** PP

                      -EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS---S---SSCH..CHHHHHH CS
  Glyco_tran_28_C  94 plIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaeklrlaekskasaaskfadla 164
                      p+++vp+p+ ++++q  Na  +++ag++l+++++eltp ++e ++  l  +++rla++ +a+aa + +d  
       KIR60872.1 286 PTVYVPYPH-SNQEQKRNALPVVEAGGGLLVDDAELTPAWVERTIIPLIRDPHRLAAMGAAAAAYGRRDGD 355
                      *********.55************************************************99887777765 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1     4e-08   0.00018       9     102 ..      22     125 ..      14     140 .. 0.93
   2 ?    2.6   0.0     0.027   1.2e+02      10      36 ..     216     244 ..     209     269 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 4e-08
  Glyco_transf_4   9 leLaraLarrGheVtvvtpgddgpleeev...........elvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalr 92 
                     l +a  L+r+   V++ + g+++ le+e            + +  +++v++ l + + r++ ++r++ +++++ + Dvv   + +  + ++la++
      KIR60872.1  22 LAFADCLRRHDPGVRITCLGTPKGLENELippagydlrqiPAYQLPRSVNMSLVRTPDRMWKAARAAGKVIDEVRADVVVGFGGYVSVPGYLAAW 116
                     56788999999999999*****99999999*9**99999999999999999999***************************************** PP

  Glyco_transf_4  93 rrlgiplVlt 102
                     r + +p+V++
      KIR60872.1 117 R-RELPIVIH 125
                     9.99999975 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.027
  Glyco_transf_4  10 eLaraLarrGheVtvv..tpgddgpleee 36 
                       a++Lar+G++V  v  +++ + p++  
      KIR60872.1 216 GAAKELARHGVQVLHVmgARNEPVPIPSD 244
                     56999******996663555554444444 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.5     3e-08   0.00014       9     104 ..      23     127 ..      14     143 .. 0.73
   2 !    5.9   2.1    0.0035        16      26      79 ..     150     198 ..     141     213 .. 0.74
   3 ?    3.7   2.0     0.017        76       7      49 ..     214     256 ..     208     365 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 3e-08
  Glyco_trans_4_4   9 elaraLaar..GheVtvltpapapgapeleedgvrvhrlpvprrp.....spladlaalralrrll..rqrrerpdvvhahsptaglaarlarr 93 
                      ++a  L+++  G+++t+l +++  + + +  +g  ++ +p++  p     s+++++++++ ++r+     ++ r dvv+ ++ + + ++ la++
       KIR60872.1  23 AFADCLRRHdpGVRITCLGTPKGLENELIPPAGYDLRQIPAYQLPrsvnmSLVRTPDRMWKAARAAgkVIDEVRADVVVGFGGYVSVPGYLAAW 116
                      56777787733556665544444444448899999999998888733344466667788888777774349***********999999999999 PP

  Glyco_trans_4_4  94 rrgiplvvtlh 104
                      rr +p+v++  
       KIR60872.1 117 RRELPIVIHEV 127
                      *******9865 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0035
  Glyco_trans_4_4  26 papapgapeleedgvrvhrlpvprrpspladlaalralrrllrqrrerpdvvha 79 
                      p+++++a++l  + +rv+++p++r+ ++l ++a ++a+r+ +     rpd+ ++
       KIR60872.1 150 PHQPAQAEAL--RDARVVGVPLRRGIAGLDRAANAAAARAHF---GLRPDLPVL 198
                      4444444433..358899*******99999999999999999...999997655 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.017
  Glyco_trans_4_4   7 vaelaraLaarGheVtvltpapapgapeleedgvrvhrlpvpr 49 
                      va  a++La++G++V  +  a  ++ p      v+++ lp   
       KIR60872.1 214 VAGAAKELARHGVQVLHVMGARNEPVPIPSDLPVPYVTLPYLS 256
                      777899*********9999988888887778888887777443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2724.14
//
Query:       KIR60873.1  [L=488]
Description: UDP-N-acetylmuramate--alanine ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-25   90.7   0.0    1.6e-25   90.2   0.0    1.2  1  Mur_ligase_M  Mur ligase middle domain
    1.9e-19   69.8   0.1    6.5e-19   68.1   0.0    2.0  2  Mur_ligase    Mur ligase family, catalytic domain
    3.9e-16   59.1   0.1    9.4e-15   54.6   0.0    2.7  3  Mur_ligase_C  Mur ligase family, glutamate ligase domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.0   2.7e-29   1.6e-25       1     191 [.     122     303 ..     122     304 .. 0.93

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 2.7e-29
                   EESSS-HHHHHHHHHHHHHCTEE.EEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHCTTTCCHCBESEEEE---TSTTHHHHSSHHHHHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagk.vigtvgttnneiglpktlaemekkeaeyavlEvsshglgekrlegllkpdvavitnispdHldfhgtlenyae 96 
                   ++Gt+GKTTtt+++  +l++ag+   +++g      ++ +  + +++ + e++v+E+ ++    +r   +++p v vitni+ dHl  +g+l    +
    KIR60873.1 122 IAGTHGKTTTTSMVTMVLQQAGAdPSFVIGG-----EISEVGSGAHHGTGEHFVVEADES----DRSFLIYRPYVSVITNIEADHLNTYGDLATLEA 209
                   89*******************5549999998.....67777777777889**********....7777779************************** PP

                   HHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEE.EEESSCSCHHHHHHHHHHHH CS
  Mur_ligase_M  97 aKaelferlkeegiavinaddpyakelikklkkakvkvvtfglekeaedlraknieeksegteiellevkggele.ieipllGkhnvyNalaaiaa 191
                   a+ae+ +   ++g+ v+ addp +++l++ l+ ++ +v+t+g++++a dlr +++ ++++g+++ l e++g +l  +++p++G+h   N + a+++
    KIR60873.1 210 AFAEFARLTDPDGFIVTCADDPGGRRLAQTLRAEGRRVHTYGEAADA-DLRLSEVVSSAQGVRY-LAEIDGRSLGeFRLPVPGRHMGLNSASAVLT 303
                   **********************************************9.79*************9.89999998878***************99976 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   1.1e-22   6.5e-19       1      86 [.      19     116 ..      19     118 .. 0.97
   2 ?   -3.4   0.0       2.2   1.3e+04      28      49 ..     233     254 ..     233     269 .. 0.63

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 1.1e-22
                 EEEEESTTSCCHHHHHHHHHHTTSEEEEEESSHC.....HHHTT-EEEES-HGGGG......EE-T.S-TTCHHHHHHHHTTEEEEEHHHHHHHHHHC CS
  Mur_ligase   1 eihfigidgrgmsagalflalkGykvdGsdfies.....lialGaaavvghdaani......vvss.iskdnpeleaakepgipvesraeaLaelaar 86 
                 +ih ig++g gms++a++++ +G  v+Gs++ e      ++alG +++++h+++n+      v+ss i++d+ e+++a+++g++v +r+eaLa+ +  
  KIR60873.1  19 RIHLIGVGGVGMSGLARLFLTRGLPVSGSELREWpslagMRALGGTIHMTHEPSNLdgvdtvVYSSaIPQDHVEMVEARRRGLRVLHRSEALAAAMTG 116
                 59*****************************99999**********************************************************9976 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.2
                 EEESSHCHHHTT-EEEES-HGG CS
  Mur_ligase  28 GsdfieslialGaaavvghdaa 49 
                 G+++++ l+a+G +++   +aa
  KIR60873.1 233 GRRLAQTLRAEGRRVHTYGEAA 254
                 5666677777777776666555 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.089   5.3e+02      34      78 ..     110     150 ..     104     158 .. 0.66
   2 ?   -3.0   0.0       1.5   8.8e+03      59      85 ..     209     234 ..     203     238 .. 0.73
   3 !   54.6   0.0   1.6e-18   9.4e-15       1      81 [.     324     401 ..     324     410 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.089
                   HHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSE.EEEE CS
  Mur_ligase_C  34 lreiapdkrlilvfgpggelgertrtfhdefgrlasalads.lvvl 78 
                   l+   + +r ++++g   + g+ t t   ++  +++++ ++  +v+
    KIR60873.1 110 LAAAMTGRRTVAIAGT--H-GKTTTT--SMVTMVLQQAGADpSFVI 150
                   33335789*******8..6.445555..667667776666656555 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.5
                   CTHHHHHHHHCCHSSEEEEEESS-TTS CS
  Mur_ligase_C  59 tfhdefgrlasaladslvvlgdyprae 85 
                   + ++ef+rl    +  +v++ d+p ++
    KIR60873.1 209 AAFAEFARLTDP-DGFIVTCADDPGGR 234
                   457788888886.77788888888665 PP

  == domain 3  score: 54.6 bits;  conditional E-value: 1.6e-18
                   CTTSSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEEESS CS
  Mur_ligase_C   1 vkgRlevvgeadgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvvlgdy 81 
                   v++R+e+ g adgv+v+d ya +p+s+  a ++lre+a ++rli+vf+p   +  rtr++++e+++++  lad+lv+l++ 
    KIR60873.1 324 VRRRFERKGVADGVLVYDEYAYHPTSMTLAMRTLREVAGEGRLIVVFQP--YRLYRTRDLQAEIAAALG-LADELVLLEVF 401
                   78**********************************************9..55589*************.6***9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3709.25
//
Query:       KIR60874.1  [L=272]
Description: peptidase S33 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-15   55.9   0.1    7.1e-15   55.1   0.1    1.4  1  POTRA_1   POTRA domain, FtsQ-type
    1.7e-07   32.0   0.0      3e-07   31.2   0.0    1.4  1  FtsQ      Cell division protein FtsQ


Domain annotation for each model (and alignments):
>> POTRA_1  POTRA domain, FtsQ-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.1   7.9e-19   7.1e-15       2      69 .]      82     149 ..      81     149 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 7.9e-19
                 XX-EEEEES-SS--HHHHHHHHHTTSTT-GGGS-HHHHHHHHHH-TTEEEEEEEEETTTEEEEEEEC- CS
     POTRA_1   2 pikqvevsGnkhlsseeiikalgiekgtslfsldleaieqrleklpwvksasVrrqwPntleitveEr 69 
                  +++v+v+G + +++ e+++a+++ ++++l ++dl+a+++r+  l  v++a+V+r wP+ l+++v+Er
  KIR60874.1  82 GVREVRVEGAELVTAVEVREAAAVPDDQPLARVDLAAVARRIGTLAPVERATVTRDWPDALVVRVVER 149
                 589*****************************************877********************9 PP

>> FtsQ  Cell division protein FtsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   3.4e-11     3e-07       1     115 [.     153     262 ..     153     264 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 3.4e-11
                 EEEEETE.EEEEETT--B-C......CCBSS-EEE..........S.-HHHHHCCS-HHHHH.S-SEE-SS-TTEEEE-T.TS-EEEEES....TTHHH CS
        FtsQ   1 AlwqeggedalidaeGevfea.deeaedeklPllt....Gpegsek.evlevlaelpeelkpleiseialserrrwqlvlddgvevklgreelaedlee 93 
                 A++ +g ++a++d  G+vf+  ++++e  +lP++     Gp +  + + levl++l++el+  ++ e+ + +  r+ l+l+ + +v +g++   ++ ++
  KIR60874.1 153 AVVPQGERFAVVDGSGVVFRSlPRQPE--GLPVVRvgrpGPTDPGTlAGLEVLGALTPELRG-QLVEVGVEGLARISLRLRGDRTVVWGDA---TRGAD 245
                 678888669**********88333444..4****97666677777767*************8.*****************888*******8...65557 PP

                 HHHT-CCHHHC.........CC CS
        FtsQ  94 klarlvkilpqlrlgreieyiD 115
                 k +   ++l +  +    + iD
  KIR60874.1 246 KARVATALLGRK-A----DTID 262
                 777666666653.3....6666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2007.46
//
Query:       KIR60875.1  [L=370]
Description: cell division protein FtsZ [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-37  127.9   0.3    9.4e-37  127.1   0.3    1.4  1  Tubulin         Tubulin/FtsZ family, GTPase domain
    3.6e-36  123.3   1.8      8e-36  122.2   1.8    1.6  1  FtsZ_C          FtsZ family, C-terminal domain
  ------ inclusion threshold ------
      0.049   13.5   0.3       0.38   10.6   0.0    2.2  2  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.1   0.3   1.6e-40   9.4e-37       2     194 ..      11     168 ..      10     171 .. 0.98

  Alignments for each domain:
  == domain 1  score: 127.1 bits;  conditional E-value: 1.6e-40
                 EEEEEEHHHHHHHHHHHHH...HHHCH....HHHT.....TTEEEEE....EEESBHHHHHTS-GS......EEEE--CCCCTTC--TT-HHHHHHHHH CS
     Tubulin   2 iivigvGqcGnqignelwellakehgiqsdgdslesfFsesgkveyiprsvaidtdpqvlneikagselfnpnklllgkegagnngaggypevgkeaae 100
                 i+v+g+G++G++++n+++e      g+             +g ve+i    ai+td+q+l  ++a+       kl +g e ++++gag++p+vgk aae
  KIR60875.1  11 IKVVGIGGGGVNAVNRMIE-----VGL-------------KG-VEFI----AINTDAQALLMSDAD------VKLDVGRELTRGLGAGANPDVGKNAAE 80 
                 89*****************.....599.............88.9***....***************......*************************** PP

                 HTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--GG.G-HHHHHHHHHHHHHHHHT-SEEEEEEHHHHHC CS
     Tubulin 101 eileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPsefsevvvepynailalkelieesdavividNdaLlk 194
                 + ++ei++ ++++d+   +f+t + gGGTG+G +pv++ ++++   +al+++vv+ P++f e+++++ +a+ ++ el++++d++ivi+Nd+Ll 
  KIR60875.1  81 DHRDEIEEVLKGADM---VFVTCGEGGGTGTGGAPVVANIARKL--GALTIGVVTRPFSF-EGKRRQVQAEAGIDELRNQCDTLIVIPNDRLLA 168
                 ***************...**************************..**************.******************************986 PP

>> FtsZ_C  FtsZ family, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.2   1.8   1.3e-39     8e-36       1      95 []     219     313 ..     219     313 .. 0.99

  Alignments for each domain:
  == domain 1  score: 122.2 bits;  conditional E-value: 1.3e-39
                 EEEEEEEEEEESTTHHHHHHHHHHTSGGGT--GGG-SEEEEEEEE-TT--HHHHHHHHHHHHHHS-TTSEEEEEEEE-TT--SEEEEEEEEES-X CS
      FtsZ_C   1 GvAmmgvGeasgedraeeaaeaaisspLLdvdlsgAkgvlvnitggsdltlkEveevaetireevdeeanvivGavideeledeirvtvvatglk 95 
                 G+A+mg+G+a+ge+ra eaaeaaisspLL+ +++gA+gvl++i+ggsdl+l+E++++a+ ++++++++an+i+Gavid+ l de+rvtv+a+g++
  KIR60875.1 219 GSALMGIGSARGENRAVEAAEAAISSPLLEQSMDGARGVLLSIAGGSDLGLFEINDAAQLVTDAAHPDANIIFGAVIDDALGDEVRVTVIAAGFD 313
                 89*******************************************************************************************96 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   6.3e-05      0.38      51      84 ..      83     117 ..      63     134 .. 0.72
   2 ?    0.0   0.1      0.11   6.8e+02      53      85 ..     246     283 ..     227     288 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.3e-05
                     CCHHHHHHTT-SEEEES---TCCHHHH.HHHHHHH CS
  NAD_binding_10  51 vedlaealkgadaVvsalggggkdeeg.aknivda 84 
                      ++++e+lkgad V+++ g gg++ +g a  +++ 
      KIR60875.1  83 RDEIEEVLKGADMVFVTCGEGGGTGTGgAPVVANI 117
                     589***************88887555533333333 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.11
                     HHHHHHTT-SEEEES---TCC.....HHHHHHHHHHHH CS
  NAD_binding_10  53 dlaealkgadaVvsalggggk.....deegaknivdaa 85 
                      l++ ++ga  V+ +++gg++      +++a+ + daa
      KIR60875.1 246 LLEQSMDGARGVLLSIAGGSDlglfeINDAAQLVTDAA 283
                     5899999***9999998888878777666677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2623.99
//
Query:       KIR60876.1  [L=240]
Description: cell division protein SepF [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-25   89.4   0.0    1.9e-25   88.9   0.0    1.2  1  SepF      Cell division protein SepF


Domain annotation for each model (and alignments):
>> SepF  Cell division protein SepF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0   1.1e-29   1.9e-25       1      72 []     152     223 ..     152     223 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 1.1e-29
                 EEEEE-SSGGGHHHHHHHHHTT-EEEEE-CCCTCHHHHHHHHHHHHHHHHCT-EEEEECTTEEEEE-TT-EE CS
        SepF   1 vvvveprsfedaqeiadalkegkiVilnledldkeeakrivdflsgvvyaldGdiqkvgkkvflitPknvdi 72 
                 +++++p+++++a++i++++++g +Vi+nl+++d+++a+r+vdf++g++++l+G+i++v+++vfl++P+nv++
  KIR60876.1 152 ITTLHPTTYREARTIGEHFRDGVPVIINLTEMDEADARRLVDFAAGLAFGLRGTIERVTNRVFLLSPANVQV 223
                 6789******************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.49
# Mc/sec: 1475.96
//
Query:       KIR60877.1  [L=99]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.3e-12   45.7   7.3    8.9e-12   45.3   7.3    1.2  1  YGGT         YGGT family
  ------ inclusion threshold ------
       0.47   10.8   4.5        9.7    6.6   1.1    2.2  2  Sigma_reg_N  Sigma factor regulator N-terminal


Domain annotation for each model (and alignments):
>> YGGT  YGGT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   7.3   9.9e-16   8.9e-12       2      68 ..      11      91 ..      10      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 9.9e-16
        YGGT  2 lllslyilllilrills........w.pnpfynpiaqflyklTePllapfRrlip..ggg...iDlSplvallvlqllrsl 68
                l+l ++ ++l++r++ls        w p +   +  + ++ +T+P+l+ +Rr+ip  ++g   iDl++lv+l++l +l+ +
  KIR60877.1 11 LILYVFLIILLARFVLSavlaygrrWqPGRGATVGLESVWSVTDPPLKALRRVIPplRIGtvsIDLASLVLLVILFVLMEF 91
                7899*************8777777779888899999*****************9988566788**************9965 PP

>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0019        17      12      35 ..       5      28 ..       2      56 .. 0.70
   2 ?    6.6   1.1    0.0011       9.7       2      34 ..      58      89 ..      57      96 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0019
  Sigma_reg_N 12 ilrivlislivlllifvilvvtll 35
                 +l++  ++l v+l+i++  +v+ +
   KIR60877.1  5 LLQVLYLILYVFLIILLARFVLSA 28
                 577888888888888877755444 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0011
  Sigma_reg_N  2 kilkkakrksilrivlislivlllifvilvvtl 34
                 k+l++++  +++ +v+i l++l+l+++++v ++
   KIR60877.1 58 KALRRVIPPLRIGTVSIDLASLVLLVILFV-LM 89
                 688999999999999999988777766663.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 714.44
//
Query:       KIR60878.1  [L=267]
Description: cell division protein DivIVA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-18   66.4  20.9    1.5e-11   44.5   0.0    3.6  3  DivIVA         DivIVA protein
     0.0085   16.6  10.9     0.0085   16.6  10.9    2.6  3  V-ATPase_G     Vacuolar (H+)-ATPase G subunit
     0.0095   15.4  12.7     0.0095   15.4  12.7    2.6  3  DUF3552        Domain of unknown function (DUF3552)
  ------ inclusion threshold ------
      0.011   16.4   2.2       0.13   13.0   0.0    2.4  2  RNA_polI_A14   Yeast RNA polymerase I subunit RPA14
      0.018   14.6   0.1      0.037   13.6   0.1    1.5  1  ATP-grasp_2    ATP-grasp domain
      0.025   13.5  12.8       0.61    8.9   7.0    2.2  2  Spc7           Spc7 kinetochore protein
       0.19   11.1  19.4       0.97    8.7  19.4    1.9  1  DUF4407        Domain of unknown function (DUF4407)
       0.48   10.7   1.9         11    6.4   0.1    2.7  2  DUF948         Bacterial protein of unknown function (DUF948)
        0.6    9.9   1.9       0.67    9.7   0.8    1.6  2  REF            Rubber elongation factor protein (REF)
        1.7    7.1  14.1        2.2    6.7  14.1    1.1  1  Borrelia_P83   Borrelia P83/100 protein
        2.3    8.0  15.2        1.2    9.0  10.6    2.3  2  HrpE           HrpE/YscL/FliH and V-type ATPase subunit E
          3    6.9  13.4        3.6    6.7  10.7    2.3  2  Taxilin        Myosin-like coiled-coil protein
        5.8    7.0  17.5        2.3    8.4   6.8    3.4  3  BRE1           BRE1 E3 ubiquitin ligase
        8.9    6.8  22.7         23    5.4   2.4    3.2  3  CENP-H         Centromere protein H (CENP-H)
        8.9    7.0   8.4         25    5.6   0.1    3.2  2  YabA           Initiation control protein YabA
        9.5    6.3  25.2        1.9    8.6   2.3    3.2  3  TPR_MLP1_2     TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   1.4e-14   1.5e-11       1      50 [.       3      55 ..       3      58 .. 0.94
   2 !   18.7  14.9   1.3e-06    0.0014      22     118 ..      77     175 ..      73     180 .. 0.79
   3 !   13.6   5.6   4.9e-05     0.054      75     131 .]     154     210 ..     153     210 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 1.4e-14
                --HHHHHH----EEE...EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
      DivIVA  1 ltplDIknkeFkkkl...rGYdedeVdeFLdqvakdyeallkeneelkekvke 50
                ltp D++n  Fkk     rGYde+eVd+FLd+v +++ +l++en+el+++v++
  KIR60878.1  3 LTPADVHNVAFKKPPigkRGYDEEEVDAFLDEVERELARLIEENNELRAQVER 55
                79***********876669*******************************986 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  22 eVdeFLdqvakdyeallkeneelkekvkeleekl..keykeleetLkktlvvaqetaeevkanakkeaeliikeAekkaekiveeaeeeakkiaeeiee 118
                 +V++ Ld v +d  a  +  +++++++++ + +   +   + e++  + l++aq+ta++  + a++ea+++++eA+ kae++ +ea+ +a+ ++++  +
  KIR60878.1  77 DVKAQLDRVQRDKVAAEQAARAMQAELEQVRAQGgpAVAGDGEQQALRVLMMAQRTADDHVSDARREADQLLSEARSKAEEVTREARAKADALERDARQ 175
                 6777777777777777777777777776655553114455678888899******************************************99988765 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 4.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  75 taeevkanakkeaeliikeAekkaekiveeaeeeakkiaeeieelkrqarlfrqrlk 131
                  aeev+++a+++a+ + ++A+++ ++ +     +   +++ ieelk+ +r +r+rlk
  KIR60878.1 154 KAEEVTREARAKADALERDARQRHQEAMGGLDAKRTALQKHIEELKQFEREYRTRLK 210
                 69****************************************************986 PP

>> V-ATPase_G  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       3.1   3.5e+03      40      87 ..      26      47 ..      12      55 .. 0.52
   2 ?   -0.1   1.5       1.2   1.3e+03      22      48 ..      79     109 ..      70     111 .. 0.63
   3 !   16.6  10.9   7.5e-06    0.0085       2      89 ..     119     208 ..     118     219 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3.1
                HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHSSHHHHHHHHHHH CS
  V-ATPase_G 40 kEieeyrakkekefkekeaeklgseeelekkieketeekikelkesvk 87
                +E++++  + e+e                          +++l e+ +
  KIR60878.1 26 EEVDAFLDEVERE--------------------------LARLIEENN 47
                3444444444444..........................444433333 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHH....HHHHHHHHHH CS
  V-ATPase_G  22 eArkrkakrlkqAkeeA....ekEieeyrak 48 
                 +A+ ++ +r k A e+A    ++E+e+ ra+
  KIR60878.1  79 KAQLDRVQRDKVAAEQAaramQAELEQVRAQ 109
                 4666667776666665522225677777765 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 7.5e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHSHHHHHHHHHHHHSSHHHHHHHHHHHHH CS
  V-ATPase_G   2 qsqgIqqLLqAEkeAaeivkeArkrkakrlkqAkeeAekEieeyrakk...ekefkekeaeklgseeelekkieketeekikelkesvkkn 89 
                 ++q++  L+ A ++A++ v++Ar++  + l +A+++Ae+   e rak    e++ ++ ++e++g+ ++  + ++k+  e++k+++++++++
  KIR60878.1 119 EQQALRVLMMAQRTADDHVSDARREADQLLSEARSKAEEVTREARAKAdalERDARQRHQEAMGGLDAKRTALQKHI-EELKQFEREYRTR 208
                 5789999*******************************999999998733356788888888888888888887776.4677777777765 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2       1.3   1.4e+03     161     176 ..      33      48 ..      25      56 .. 0.58
   2 ?    1.0   1.1      0.21   2.4e+02     106     143 ..      69     106 ..      67     109 .. 0.86
   3 !   15.4  12.7   8.5e-06    0.0095      29     123 ..     126     221 ..     113     235 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.3
     DUF3552 161 eelkheaAkmikeiee 176
                 +e+++e A +i e +e
  KIR60878.1  33 DEVERELARLIEENNE 48 
                 5566666666655443 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.21
     DUF3552 106 esleekekelkqkeqsleekeeeleelveeqrqeLeri 143
                 ++l ++ +++k++ +++++ +  +e+  +  ++eLe++
  KIR60878.1  69 ARLAAELNDVKAQLDRVQRDKVAAEQAARAMQAELEQV 106
                 67788888899999999999999999999999999987 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 8.5e-06
     DUF3552  29 iaeAeeeAkkiieeAkkeAeakkkealleakeeihklreelekelkerrnelqrlekRllqkeetLdrkeeslekkeesleekeke.lkqkeqsle 123
                 +  A+++A++ +++A++eA+++  ea  +a e ++++r+++++  ++ r+  q+    l  k ++L++  e+l++ e++ +++ k  l+++ ++l+
  KIR60878.1 126 LMMAQRTADDHVSDARREADQLLSEARSKAEEVTREARAKADALERDARQRHQEAMGGLDAKRTALQKHIEELKQFEREYRTRLKAyLESQLRDLD 221
                 445677777777777777777777777777777777777777666666666666667777777777777777777776665554432455555555 PP

>> RNA_polI_A14  Yeast RNA polymerase I subunit RPA14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00011      0.13      16      69 ..      33      88 ..      24      89 .. 0.81
   2 ?    1.7   1.4       0.4   4.5e+02      17      71 ..     143     206 ..     128     207 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00011
  RNA_polI_A14 16 eevekfLteFIdekEssaselageesstkeaa..tglsvdtelssvlsQLkRiqRd 69
                  +eve+ L+  I+e+++  ++++        a+   ++    el+ v +QL R+qRd
    KIR60878.1 33 DEVERELARLIEENNELRAQVERGGRGGAPAGpgGDARLAAELNDVKAQLDRVQRD 88
                  89*********999997777776666655555668888888999999********9 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.4
  RNA_polI_A14  17 evekfLteFIdekEs.......saselageesstkeaa..tglsvdtelssvlsQLkRiqRdlr 71 
                   e+ ++L+e  ++ E+       +a++l+ ++ + ++ a     ++ t l+  +  Lk  +R+ r
    KIR60878.1 143 EADQLLSEARSKAEEvtrearaKADALERDARQRHQEAmgGLDAKRTALQKHIEELKQFEREYR 206
                   6667777766666665665554444444444444433343455677889999999999999987 PP

>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   3.3e-05     0.037      27      86 ..      32      96 ..      23     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.3e-05
                 HHHHHHHHHHHTSSSEEEEE--SSSTCCCT.....TCEEEESSHHHHHHHHHCCTTSEEE-TTS- CS
  ATP-grasp_2 27 aeeaeeaakklgekelvvKaQvlaGGRGKa.....gGvklvkskeeakeaakellgkelvtkqtg 86
                  +e+e+ +++l e++  ++aQv  GGRG a     g  +l+++ +++k+  +++   ++ ++q+ 
   KIR60878.1 32 LDEVERELARLIEENNELRAQVERGGRGGApagpgGDARLAAELNDVKAQLDRVQRDKVAAEQAA 96
                 57888888899888889*************99997779999999999999998888888877765 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.3    0.0012       1.4     162     234 ..      25     108 ..      23     111 .. 0.79
   2 ?    8.9   7.0   0.00054      0.61     144     245 ..     133     233 ..     124     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0012
        Spc7 162 eeeldellpeleeekaeleeeleklqeaaeeles..........id.keeLeelreelaelkaeieekkkelaelqeqleelee 234
                 eee+d++l+e+e+e a+l ee ++l++++e                  +eL+ ++ +l++++ +  + ++    +q++le++++
  KIR60878.1  25 EEEVDAFLDEVERELARLIEENNELRAQVERGGRggapagpggdARlAAELNDVKAQLDRVQRDKVAAEQAARAMQAELEQVRA 108
                 788999999999999999999999999777666677777777663348999999999999998888888899999999988765 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00054
        Spc7 144 leenlegleed.kelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelke 241
                 +++++++ +++ ++lL++ +++++e+  e +++ ++le+ +++  ++a    + +++ L++  eel++ + e++   +  a l++ql +l+ + + l++
  KIR60878.1 133 ADDHVSDARREaDQLLSEARSKAEEVTREARAKADALERDARQRHQEAMGGLDAKRTALQKHIEELKQFEREYR--TRLKAYLESQLRDLDGRGQGLEA 229
                 55666665554156789999999999999999999999999999998887777889999999999999999888..88888999999999999888888 PP

        Spc7 242 qkse 245
                 ++++
  KIR60878.1 230 EMTR 233
                 8765 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  19.4   0.00086      0.97     104     254 ..      31     195 ..      27     248 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00086
     DUF4407 104 FekeIdaelaeeqqeeakelkeqlaaa..............ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaake. 187
                 F +e+++ela+  +e+ +el++q++                l ael++ +aq+++    ++  + +++++ +++q+el++ + +g ++vaG+g+     
  KIR60878.1  31 FLDEVERELARLIEEN-NELRAQVERGgrggapagpggdarLAAELNDVKAQLDR----VQRDKVAAEQAARAMQAELEQVRAQGGPAVAGDGEQQALr 124
                 7889999999888776.67778888778999****99555555555555555555....5555555555555555555555566778899998876664 PP

     DUF4407 188 ........kkaqldaaqaelaelkakldatarlaalraelaeleaerakeraasqaaaaaddGllarlealdrlt 254
                         ++++  +a++e ++l ++  a+++ ++  +e+    ++ a er+a q++++a  Gl a+ +al++ +
  KIR60878.1 125 vlmmaqrtADDHVSDARREADQLLSE--ARSKAEEVTREARA--KADALERDARQRHQEAMGGLDAKRTALQKHI 195
                 55554445444444455555554444..33333333222222..2333333334444455566666666666655 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0098        11      30      79 ..      27      94 ..      23     102 .. 0.83
   2 ?    2.9   0.2      0.12   1.3e+02      48      65 ..     143     160 ..     120     203 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0098
      DUF948 30 eaaatieelekqvdpilkevedllakvne..................lledvneklekvdplteavad 79
                e+ a+++e+e+++  +++e ++l a+v++                   l+dv+ +l++v++   a+++
  KIR60878.1 27 EVDAFLDEVERELARLIEENNELRAQVERggrggapagpggdarlaaELNDVKAQLDRVQRDKVAAEQ 94
                7889999****************999999999999999999999888888888899988875555555 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.12
      DUF948  48 evedllakvnelledvne 65 
                 e+++ll++++  +e+v++
  KIR60878.1 143 EADQLLSEARSKAEEVTR 160
                 333333333333333322 PP

>> REF  Rubber elongation factor protein (REF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         3   3.3e+03      98     119 ..      89     110 ..      74     122 .. 0.57
   2 ?    9.7   0.8    0.0006      0.67      65     124 ..     123     182 ..     105     217 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3
         REF  98 lavaqkapeaarevasevqraG 119
                 + +a++a++a ++  ++v+++G
  KIR60878.1  89 KVAAEQAARAMQAELEQVRAQG 110
                 3344444444444445555554 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0006
         REF  65 lelLkfvDrKvdesvtkldkrvpsvvKevssqalavaqkapeaarevasevqraGvveaa 124
                 l +L+   r  d+ v++  +++ +++ e+ s+a +v ++a  +a ++  +++++   ++ 
  KIR60878.1 123 LRVLMMAQRTADDHVSDARREADQLLSEARSKAEEVTREARAKADALERDARQRHQEAMG 182
                 67899999999****************************************998666555 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  14.1     0.002       2.2     217     329 ..      77     189 ..      67     223 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.002
  Borrelia_P83 217 vlkeeldkkqkdadkakkkadtaednadkqrkevreklqe..aknlpepadvsskkedkkvaeekkreiekaqkeikkkdeeakkakdakaedlkke 311
                    +k +ld+ q+d   a++ a   ++++++ r +   +     ++++     + ++  d++v  + +re+++   e++ k+ee+ +   aka+ l+++
    KIR60878.1  77 DVKAQLDRVQRDKVAAEQAARAMQAELEQVRAQGGPAVAGdgEQQALRVLMMAQRTADDHVS-DARREADQLLSEARSKAEEVTREARAKADALERD 172
                   25566666666666666666666666666666555544436678888888888889999998.999******************************* PP

  Borrelia_P83 312 skaeekeaedkeleakke 329
                   ++++ +ea    l+ak+ 
    KIR60878.1 173 ARQRHQEAM-GGLDAKRT 189
                   ***999854.45555543 PP

>> HrpE  HrpE/YscL/FliH and V-type ATPase subunit E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.43   4.9e+02     132     175 ..      58     101 ..      30     110 .. 0.68
   2 ?    9.0  10.6    0.0011       1.2      21      90 ..     123     194 ..     113     220 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.43
        HrpE 132 ratLycHPeaaadvaaWLaehsdleWklksDealasdslkLita 175
                 r+     P+  a  aa L++ + +  ++++D+  a+++ + ++a
  KIR60878.1  58 RGGAPAGPGGDARLAAELNDVKAQLDRVQRDKVAAEQAARAMQA 101
                 55555566666667777777776777777777766666665544 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0011
        HrpE  21 lrreqlaeslrarellaeArlqAeqllaqarekaeellevaveqAea..q.FWeqAnalLrglqqeRealeeq 90 
                 lr+  + +++ a++ + +Ar  A+qll +ar kaee++  a  +A a  +   +  ++ ++gl  +R+al+++
  KIR60878.1 123 LRVLMM-AQRTADDHVSDARREADQLLSEARSKAEEVTREARAKADAleRdARQRHQEAMGGLDAKRTALQKH 194
                 555444.457899999********************9987766654411313445567788888888888875 PP

>> Taxilin  Myosin-like coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.64   7.1e+02     197     218 ..      32      53 ..      23      55 .. 0.57
   2 ?    6.7  10.7    0.0032       3.6     107     223 ..      70     214 ..      67     217 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.64
     Taxilin 197 akeltkkvkalketekelkeql 218
                 ++e ++++  l e+++el++q+
  KIR60878.1  32 LDEVERELARLIEENNELRAQV 53 
                 4555555556666666666665 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0032
     Taxilin 107 kfqakLkdiqaqieekserneklreenaelteKlkslieqye....................lreehf..............ekllktkelelqlaeaK 171
                 ++ a+L+d++aq+++ + ++   ++   ++++ l+++ +q                      +                    +  ++k  e    ea+
  KIR60878.1  70 RLAAELNDVKAQLDRVQRDKVAAEQAARAMQAELEQVRAQGGpavagdgeqqalrvlmmaqrT----AddhvsdarreadqlLSEARSK-AEEVTREAR 163
                 678899999999999888888888888889999999999988888887666665555555551....0444455555553333444444.445567888 PP

     Taxilin 172 lqqadallkeeqekkkrekeyllkeakeltkkvkalketekelkeqlnlYae 223
                   +adal + +++++++    l ++ ++l+k +++lk+ e e +++l+ Y e
  KIR60878.1 164 A-KADALERDARQRHQEAMGGLDAKRTALQKHIEELKQFEREYRTRLKAYLE 214
                 8.88**********************************************86 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.52   5.9e+02      50      70 ..      35      55 ..      29      57 .. 0.68
   2 ?    2.6   1.6      0.12   1.4e+02       8      42 ..      71     105 ..      69     109 .. 0.62
   3 ?    8.4   6.8     0.002       2.3      21      92 ..     140     212 ..     120     216 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.52
        BRE1 50 amrskdalenelkkLnkllsK 70
                ++r+   l  e++ L++++++
  KIR60878.1 35 VERELARLIEENNELRAQVER 55
                566666667777777777665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.12
        BRE1   8 lekafeelseqlskkvkeltileekklrleaekak 42 
                 l ++ +++++ql+  + +  + e+    ++ae ++
  KIR60878.1  71 LAAELNDVKAQLDRVQRDKVAAEQAARAMQAELEQ 105
                 55666666666666666666666666666666655 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.002
        BRE1  21 kkvkeltileekklrleaekakadqkyfaamrskdalene.lkkLnkllsKsselieqLkelekefvrklkel 92 
                 +  +  + l e  +++e    +a+ k  a++r+ +++++e +  L ++ +  +++ie+Lk+ e+e++++lk++
  KIR60878.1 140 ARREADQLLSEARSKAEEVTREARAKADALERDARQRHQEaMGGLDAKRTALQKHIEELKQFEREYRTRLKAY 212
                 44444456788889999999999*************99985789**************************975 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.047        53      25      51 ..      28      54 ..      24      58 .. 0.86
   2 ?    5.4   2.4      0.02        23      17      55 ..      70     108 ..      68     132 .. 0.84
   3 ?    4.0   9.6     0.056        63      18      79 ..     137     206 ..     120     212 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.047
      CENP-H 25 lqeeltevekenlrlkrknrelaaell 51
                + + l+eve+e  rl ++n+el a+++
  KIR60878.1 28 VDAFLDEVERELARLIEENNELRAQVE 54
                566799*****************9995 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.02
      CENP-H  17 klsqelrelqeeltevekenlrlkrknrelaaellelak 55 
                 +l++el++++++l++v+++ ++++++ r + ael++ + 
  KIR60878.1  70 RLAAELNDVKAQLDRVQRDKVAAEQAARAMQAELEQVRA 108
                 7899***************************99965544 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.056
      CENP-H  18 lsqelrelqeeltevekenlrlkrknrelaaellelakekesek........eklkeelekleaelkksr 79 
                  s + re+ + l+e++ ++ +++r+ r +a  l++ a++ ++e         + l++ +e+l++  +++r
  KIR60878.1 137 VSDARREADQLLSEARSKAEEVTREARAKADALERDARQRHQEAmggldakrTALQKHIEELKQFEREYR 206
                 4567778888888888888888888888888887777777777788885544334444444444444444 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.022        25      22      45 ..      30      53 ..      23      58 .. 0.79
   2 ?    0.4   4.5      0.93     1e+03      14      53 ..      72     119 ..      67     233 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA 22 eeleelkeelaelleenaeLelen 45
                + l+e+++ela+l+een+eL+++ 
  KIR60878.1 30 AFLDEVERELARLIEENNELRAQV 53
                557888999999999999998765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.93
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH........X CS
        YabA  14 eeqleelleeleelkeelaelleenaeLeleneklrerl........e 53 
                   +l++++++l++++++ ++  +  +++++e e++r +         e
  KIR60878.1  72 AAELNDVKAQLDRVQRDKVAAEQAARAMQAELEQVRAQGgpavagdgE 119
                 455666666666666666666666666666666666554444333330 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.3      0.31   3.4e+02      60      80 ..      33      53 ..      24      56 .. 0.43
   2 ?    8.6   2.3    0.0017       1.9      53      91 ..      69     107 ..      67     110 .. 0.86
   3 ?    5.9   9.2     0.011        12      17     104 ..     141     230 ..     121     236 .. 0.58

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.31
  TPR_MLP1_2 60 qalreelnelkaeiaelkaea 80
                 ++  el++l +e +el+a++
  KIR60878.1 33 DEVERELARLIEENNELRAQV 53
                333333333333333333333 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0017
  TPR_MLP1_2  53 aedvkelqalreelnelkaeiaelkaeaesakaeleese 91 
                 a  + el++++++l++++ +   ++++a + +aele+ +
  KIR60878.1  69 ARLAAELNDVKAQLDRVQRDKVAAEQAARAMQAELEQVR 107
                 566789999999999999999999999999999999976 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.011
  TPR_MLP1_2  17 keeaeaklqklqedlekqaeiakeaqqkYerel.vkhaedvkelqalreelnelkaeiaelkae.aesakaeleeseesweeqkeeleke 104
                   ea++ l++++++ e+ +++a++  +  er   + h e++  l a r+ l++  +e+++++ e + ++ka le +   ++ + + le e
  KIR60878.1 141 RREADQLLSEARSKAEEVTREARAKADALERDArQRHQEAMGGLDAKRTALQKHIEELKQFEREyRTRLKAYLESQLRDLDGRGQGLEAE 230
                 444445555555555555555556666666654356667777777777777777777776665523345555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2093  (0.116738); expected 358.6 (0.02)
Passed bias filter:                      881  (0.0491383); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.49
# Mc/sec: 1653.20
//
Query:       KIR60879.1  [L=205]
Description: hypothetical protein TK50_23950 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.024   14.6   0.3      0.043   13.8   0.3    1.4  1  Ada_Zn_binding   Metal binding domain of Ada
        1.2    9.2  11.9        1.7    8.7  11.9    1.2  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
        7.5    6.1   8.2         10    5.6   8.2    1.1  1  SseC             Secretion system effector C (SseC) like fami


Domain annotation for each model (and alignments):
>> Ada_Zn_binding  Metal binding domain of Ada
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3   7.2e-06     0.043      48      65 .]     178     195 ..     177     195 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.2e-06
                     HHHHHHTT-EEETTTTTS CS
  Ada_Zn_binding  48 aaeAeaagfrpCkrcrPd 65 
                     +aeA + gf pC rc Pd
      KIR60879.1 178 VAEAVRLGFTPCARCAPD 195
                     689**************7 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  11.9   0.00029       1.7      39      96 ..       1      61 [.       1      65 [. 0.70

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00029
  Phage_holin_3_6 39 llgaagvlallalllllvalalala.a..lwlaalivaavllvlagvlalvglkklkkakp 96
                     +++a ++l l+a++ll+v+l  + + +  + +aa ++aav lv+++  a++++++++++ p
       KIR60879.1  1 MIVASLLLILVAVVLLVVGLTGGSSvLlaASIAASLLAAVALVVGARQAAATRAAASRVDP 61
                     5677788888888888888864443224466777778888888888888888888887766 PP

>> SseC  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   8.2    0.0017        10      66     113 ..      10      55 ..       7      63 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0017
        SseC  66 ilaivsvvagalkvgaslllaavgvAgglmdaalgiadevvaaattks 113
                 ++a+v +v+g l++g+s+ll a+++A+ l++a + ++++  aaat ++
  KIR60879.1  10 LVAVVLLVVG-LTGGSSVLL-AASIAASLLAAVALVVGARQAAATRAA 55 
                 6899999999.79*******.999999999999*****9999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1091  (0.0608511); expected 358.6 (0.02)
Passed bias filter:                      674  (0.0375927); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1533.96
//
Query:       KIR60880.1  [L=99]
Description: hypothetical protein TK50_23955 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-20   70.6   0.1      1e-19   70.4   0.1    1.1  1  DUF167    Uncharacterised ACR, YggU family COG1872


Domain annotation for each model (and alignments):
>> DUF167  Uncharacterised ACR, YggU family COG1872
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.1   5.7e-24     1e-19       2      76 ..       5      79 ..       4      80 .. 0.94

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 5.7e-24
                EEEEEES---SSS----....--TTTT-------TTIIIIIHHHHHHHHHHHHHS...SEEEE-S-GGGSEEEEEE CS
      DUF167  2 vilavrvkPgakkdaig.leedaegrealkvrvaappvdGkANkalikfLakalgvpksdveivsGeksreKvvri 76
                +++avrvkPga + ++g  ++    ++al ++v+appvdG+A++a  + La+algv+  +v + sG+ sr+K++++
  KIR60880.1  5 LTVAVRVKPGAARARVGgRHD-GPLGPALVIAVNAPPVDGRATEAARRALADALGVRPAAVALRSGAASRDKLFAV 79
                789**************7776.6799***********************************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 671.82
//
Query:       KIR60881.1  [L=501]
Description: potassium transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-50  171.2  41.3    3.6e-50  170.8  41.3    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
    1.8e-10   40.5   0.4      4e-10   39.4   0.4    1.7  1  TrkA_C          TrkA-C domain
  ------ inclusion threshold ------
        1.7    8.5   6.0        3.7    7.4   3.2    2.8  2  DUF2374         Protein  of unknown function (Duf2374)
        2.2    6.1   4.7        4.3    5.1   4.7    1.4  1  DUF4175         Domain of unknown function (DUF4175)


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.8  41.3   8.1e-54   3.6e-50       4     378 ..      14     383 ..       9     386 .. 0.92

  Alignments for each domain:
  == domain 1  score: 170.8 bits;  conditional E-value: 8.1e-54
                     HHHHHHHHHHH.HHHTTSXHHHHHHHHHHHHTTTTTS......HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   4 lillallvgll.arrlklpeivgliiaGlllGpsglgl.iepseedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvliGl 96 
                     ++ll++++ +  ++rl++p++++++++G+ +G sglg+ +++  + + +l    li+++ + Gl   ++ lr +l+ + +l+++gv+++++++Gl
      KIR60881.1  14 GVLLVAVGAVRfSTRLGVPSLLVYLALGVAIGESGLGIrFDDV-DLTRTLGFCALIVIIAEGGLTARWSTLRPVLGLASALSTVGVVVSILVVGL 107
                     456566666655*************************989998.*************************************************** PP

                     HHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXHHHHHHHHHHHHH CS
  Na_H_Exchanger  97 llylllilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeaggetslllllliflvvavggl 191
                     +++l  +lg+++  a+l+ga+ls td+++v a+l ++ r+p rl  +l++es++nDa +v+l+++l   a   + ++  ++  +l + +++++g 
      KIR60881.1 108 AVHL--LLGLDWRLAMLYGAVLSSTDAAAVFATL-RRLRLPPRLVATLEAESGMNDAPVVLLVVLLSRSA---TEAGHLWWYEVLLLGYELGVGA 196
                     ***8..79**************************.**********************9999999988888...555555555677899******* PP

                     HHHHHHHHHHHHHHHHS.CTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH...HHHHHHHHHHHHHHSX CS
  Na_H_Exchanger 192 llglvigwllrlitrft.dddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnklseklesfre...glfnplfFvlvGlsld 282
                     ++g+  g+  r ++r++   ++ l++++v+ +  la++++ +l+ sg l++ +aG++l++ ++ ++  + +  f++   +l+ + +Fvl+Gl + 
      KIR60881.1 197 AVGVGAGLAGRAALRRAaLPSAGLYPIAVVGFTVLAYAAGAVLHASGFLAVYVAGVLLGNARLPHR--QAILGFADglaWLAQIGLFVLLGLLVS 289
                     *****************99****************************************9999995..77888888888**************** PP

                     HHHHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTXSSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTT.SSTTTC.STSXHHHHHHHHH CS
  Na_H_Exchanger 283 lkvlnnhlsvlilvllilvaillgrilavflllrllglslrealiigfgglqrgavalalaalgpalgllarel.yalliv.vvlftvlvqGlsl 375
                     +  l+    vl++v++ l+++ll+r+l+v++ +  ++++ re+++++++gl rgav ++la +  ++ ++ +e  + +++v vv+ftvl q ++l
      KIR60881.1 290 PGRLE--AAVLPAVVAGLALLLLARPLSVAVSATPFRVGPREQAFLSWAGL-RGAVPIVLATIPLSQRVPGAEQlFDAVFVlVVIFTVL-QAGTL 380
                     ****7..********************************************.******************9866666555505555555.99888 PP

                     HHH CS
  Na_H_Exchanger 376 kpl 378
                     +p 
      KIR60881.1 381 APA 383
                     886 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.4   8.9e-14     4e-10       3      62 ..     414     472 ..     412     480 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 8.9e-14
                 EEEEE--GGGTTSBHHHHTHHHHS-EEEEEE-T-EEES--TT-B--TT-EEEEEEEHHHH CS
      TrkA_C   3 evtvpagsplvGktlkelnlrargvlvvairRggeliipsgdtvLeeGDvllvvgspsdl 62 
                 +++vp+gs+l G  ++el+l+  g+ v  + R+g+ ++p++dt+L++GD ll+v++    
  KIR60881.1 414 QLEVPPGSRLGGVHVDELRLPV-GASVTLVLRDGVGFVPGPDTRLKAGDSLLIVATAGVR 472
                 799*******************.*******************************997655 PP

>> DUF2374  Protein  of unknown function (Duf2374)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.26   1.2e+03      11      24 ..      61      74 ..      59      77 .. 0.84
   2 ?    7.4   3.2   0.00083       3.7      10      35 ..     229     254 ..     225     258 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.26
     DUF2374 11 vlGYaAmPvIiLgG 24
                +lG+ A+ vIi  G
  KIR60881.1 61 TLGFCALIVIIAEG 74
                79*****9999765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00083
     DUF2374  10 hvlGYaAmPvIiLgGFvaVavvaill 35 
                 +vl YaA  v   +GF+aV v+ +ll
  KIR60881.1 229 TVLAYAAGAVLHASGFLAVYVAGVLL 254
                 89*******************99987 PP

>> DUF4175  Domain of unknown function (DUF4175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   4.7   0.00095       4.3       7      82 ..      89     166 ..      84     184 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.00095
     DUF4175   7 lwpllsvlalflalsllglwqllpdllrlalllafalal....laalvlplrrfrwPtraealrrlerasglphrPltal 82 
                 l+ +ls ++++++++++gl  +l   l + l+++ +++l    +aa++  lrr+r P r   ++ le++sg+++ P+  l
  KIR60881.1  89 LASALSTVGVVVSILVVGLAVHLLLGLDWRLAMLYGAVLsstdAAAVFATLRRLRLPPR--LVATLEAESGMNDAPVVLL 166
                 6778888888888888888766655444444444333332222678888********98..5778***********9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3202.12
//
Query:       KIR60882.1  [L=202]
Description: peptidase A8 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-29  102.2   0.5    3.2e-29  102.0   0.5    1.0  1  Peptidase_A8  Signal peptidase (SPase) II


Domain annotation for each model (and alignments):
>> Peptidase_A8  Signal peptidase (SPase) II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.5   1.8e-33   3.2e-29       3     137 ..      34     172 ..      32     176 .. 0.87

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 1.8e-33
  Peptidase_A8   3 llllllDqltKllvvenlkte.svevipgffkltyveNrgaafgllesgakrkllillslvvilllivlllkkkkkskllrialalilgGalGNliD 98 
                   l+ +l+D ltK l+ + l+++  v+++ g ++l++++N+gaa+++  ++++++++ l++++vi+ + ++ l+   +s  ++++l+l+lgGalGNl D
    KIR60882.1  34 LFAFLADLLTKHLALQALSDRePVKLLGGAVYLSLTRNSGAAWSI--GSDHTWVFPLITIAVIGWIGWMALRL--RSVPWAVSLGLVLGGALGNLAD 126
                   57899*********88888877899999****************8..34578*******99999999999877..4578899*************** PP

  Peptidase_A8  99 rlly......gkVvDfld.fsleliefpvFNvADvaitvGvillii 137
                   r+++      g+VvD+++ f+ ++  +pvFN+AD+a+++Gv+l ++
    KIR60882.1 127 RIFRapghfvGHVVDMISlFDPYGQVWPVFNLADSALVCGVVLAVF 172
                   **977777779*******556688899***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1436.03
//
Query:       KIR60883.1  [L=314]
Description: pseudouridine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-33  114.3   0.0    1.2e-32  113.2   0.0    1.6  1  PseudoU_synth_2  RNA pseudouridylate synthase
    0.00077   19.1   0.0     0.0014   18.3   0.0    1.5  1  S4               S4 domain


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   0.0   1.4e-36   1.2e-32       1     159 [.      97     250 ..      97     251 .. 0.88

  Alignments for each domain:
  == domain 1  score: 113.2 bits;  conditional E-value: 1.4e-36
  PseudoU_synth_2   1 dlvvvnKPagvpvqpeak....dgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapee 90 
                      d+vvv+KP gv+ +p       +     ++     s+ ++  +++++vhRLD++t+G++++Aks++a  +l +af+ r+v+K+Y a+v+g+p +
       KIR60883.1  97 DIVVVDKPVGVAAHPSPGwtgpTVIGGLAGIGHRIST-SGAAERQGVVHRLDVGTTGIMVVAKSEQAYTALKRAFKYREVEKRYHAVVQGHPDP 189
                      589**************77665333333333333333.3667889************************************************* PP

  PseudoU_synth_2  91 eegaikkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhla 159
                      + g+i+++i++   + +  +r a  ++gk ++t++ +l+ +       +sl+ ++letGr+hQiRvh++
       KIR60883.1 190 SRGTIDAPIDR---HPHHDYRWAVVSGGKPSITHYDTLEAF-----PSASLLDVRLETGRTHQIRVHFS 250
                      ***********...8899999********************.....*********************98 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.6e-07    0.0014       1      45 [.      23      65 ..      23      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.6e-07
                EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TT CS
          S4  1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpg 45
                +RLd+ ++rl    sr  A  l+ +G  lV+G v+   s++Vk+g
  KIR60883.1 23 MRLDQAVSRLFGL-SRTAAANLVDGGDALVDGVVRP-NSHKVKAG 65
                8*******55555.6********************9.99999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2201.50
//
Query:       KIR60884.1  [L=544]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-06   26.7   0.0    1.1e-05   25.4   0.0    1.5  1  AAA_31    AAA domain
  ------ inclusion threshold ------
      0.067   13.3   0.0       0.12   12.4   0.0    1.6  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain


Domain annotation for each model (and alignments):
>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.3e-09   1.1e-05       2     156 ..     293     454 ..     292     467 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.3e-09
      AAA_31   2 kvIaianqKGGvGKTTtsvnlaaala.klgkkvLlvDlDpQanattglgiekneiektlyevl..ieeknikeaii.ktkvenl..dlipssid.Laea 93 
                 +v+a+an KGGv KTT +v  aa++   +g  vL  D D     t gl+  + +  +t+ +++  + +++i e      + ++   +   +s d La+ 
  KIR60884.1 293 RVLAFANPKGGVHKTTATVLAAATVGsVRGRGVLAWD-DNELRGTLGLRAGSARHARTIRHLIhdLAQIEILEGSAlLGSLDDYlrHAADGSYDvLAGE 390
                 799****************999999978899999999.9999999999998999999999997332333333322211111111233333444435555 PP

      AAA_31  94 eielvelekkeeilkellekvkdeYDyiiiDcpPsLgllt.enaLvasdsviipvqaeayaleG 156
                 e   +  +  + ++k++le ++ ++D++ +D+  +++  + ++ + a+d++++ + +++ a   
  KIR60884.1 391 ESPRFAQRLDQFTVKRVLELLRRTHDVVCVDTGNNVESPNwRTVMQAADQLVVTTVPREDAAFS 454
                 55444455557779*********************9986526788899*999988776644444 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.4e-05      0.12       1      48 [.     295     339 ..     295     516 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.4e-05
                 EEEEESSTTSSHHHHHHHHHHHHHH.TT--EEEEEEEESSCCCCHHTTE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   1 iaiastkGGvGKTtlaanLaralar.rglrVllvDaDpqannlailegl 48 
                 +a+a+ kGGv KTt ++  a+     rg+ Vl+ D D++   +    gl
  KIR60884.1 295 LAFANPKGGVHKTTATVLAAATVGSvRGRGVLAWD-DNELRGTL---GL 339
                 589************99999888888999999999.77744443...44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3832.78
//
Query:       KIR60885.1  [L=299]
Description: hypothetical protein TK50_23990 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-05   23.6  10.7    0.00019   21.5  10.7    2.0  1  DUF2567   Protein of unknown function (DUF2567)
  ------ inclusion threshold ------
        7.3    6.2  10.6       0.59    9.8   4.1    2.3  3  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> DUF2567  Protein of unknown function (DUF2567)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5  10.7   2.1e-08   0.00019       1     106 [.      91     192 ..      91     250 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.1e-08
     DUF2567   1 lavvGvlvGalWawiaPpvhavvaltrsgervkaylGnesdrffvaaalllgllavlavvaavlvW.qaRahRGpvmvaalaiglvaaaalaaevGall 98 
                 l+++Gv +G lWa++aP     v+  +++e    y   + ++   a   +  l   ++v+aa+++W   R+ RGpv ++a a+g  +aa +a +vG ++
  KIR60885.1  91 LTALGVPLGLLWAAVAPDTP--VV--KTAE-GAVYAQPQPEQPIAADGWFSLLGLGFGVLAALALWvLLRRRRGPVGLLAGAAGGLGAALVAWQVGRRV 184
                 5789*************853..44..4444.44788888899888888888777789*********889****************************99 PP

     DUF2567  99 vklRygal 106
                     y+ l
  KIR60885.1 185 GLSTYERL 192
                 87777754 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.31   2.8e+03      40      49 ..      89      98 ..      75     125 .. 0.50
   2 ?    9.8   4.1   6.6e-05      0.59       4      56 ..     134     182 ..     131     201 .. 0.63
   3 ?   -0.6   0.1       0.1     9e+02      32      58 ..     230     256 ..     213     274 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.31
     DUF4131 40 lllallgfal 49
                ++l +lg+ l
  KIR60885.1 89 AVLTALGVPL 98
                2222222222 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 6.6e-05
     DUF4131   4 plalvllalllllllllllllrrrprrrvllllllllllallgfalrapqpna 56 
                 +++l+ l++++l++l+l++ll    rrr+  + ll+ ++++lg+al a+q ++
  KIR60885.1 134 WFSLLGLGFGVLAALALWVLL----RRRRGPVGLLAGAAGGLGAALVAWQVGR 182
                 566666666667777666664....5555555666666666666666665544 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.1
     DUF4131  32 vllllllllllallgfalrapqpnand 58 
                  ++++++ + l++++  +++++p+ ++
  KIR60885.1 230 PAFGVAVTYTLLAGWSRWPSLRPEPEP 256
                 445555556666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2075.15
//
Query:       KIR60886.1  [L=233]
Description: peptidase S16 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-29  102.0   0.0    4.9e-29  101.7   0.0    1.1  1  LON_substr_bdg  ATP-dependent protease La (LON) substrate-bin


Domain annotation for each model (and alignments):
>> LON_substr_bdg  ATP-dependent protease La (LON) substrate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.0   2.7e-33   4.9e-29       2     208 .]       5     208 ..       4     208 .. 0.85

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 2.7e-33
  LON_substr_bdg   2 lpllpldnkvlfPgitlpltvsrpksiaaierll..dkdkp.yigvflv....k....esqkdaideesisel........ysvGtvarIvqilr 77 
                     lp++pl ++vlfPg++lpl++++++++a+++ l    +++p ++gv+ +    +                  +        ++vG++a+ +q+++
      KIR60886.1   5 LPIFPL-GTVLFPGLVLPLHIFEERYRALVRHLTglPEGAPrEFGVVAIragwEvapgT---------PGRPVpgvggvtlHEVGCTAELRQVTE 89 
                     9*****.9**************************776689999******4333234332.........2222244444466************** PP

  LON_substr_bdg  78 lddgrikvvlegleRvkikkl.ekekeegylvaeveiieddsepedsdslqkelkalvqeiiekikkslarellkllleielllkyedlenpyrL 171
                     lddg + +v+ g +R+++ +l e   +e+yl+aeve + +   p+  d+   + + l   +i+ ++     + l l++++    + +  e+p  L
      KIR60886.1  90 LDDGGFDIVTVGRRRFRVAQLdET--TEPYLTAEVEWLPE---PGGPDE---AADLLAARVISVFR-----QYLGLIRPDPEDISEQLPEDPTVL 171
                     *********************777..*********88833...444444...67777888888998.....99****99999999999999999* PP

  LON_substr_bdg 172 adlvaailpfsneekqelLeeldvedRlkkvlelLkr 208
                     + lvaa  ++  +++q+lL+ +   +Rl+ +l lL+r
      KIR60886.1 172 SHLVAATAMLTVDDRQRLLAVDGTAARLRAELRLLNR 208
                     ***********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1765.00
//
Query:       KIR60887.1  [L=440]
Description: histidinol dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.9e-156  520.6   1.1   3.3e-156  520.4   1.1    1.0  1  Histidinol_dh  Histidinol dehydrogenase


Domain annotation for each model (and alignments):
>> Histidinol_dh  Histidinol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  520.4   1.1  1.8e-160  3.3e-156       2     409 .]      19     435 ..      18     435 .. 0.97

  Alignments for each domain:
  == domain 1  score: 520.4 bits;  conditional E-value: 1.8e-160
                    -------HHHHHHHHHHHHHHHHHCHHHHHHHHHHCCSSSSGGCCEE-HHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHCC----EEEEEECTTEE CS
  Histidinol_dh   2 krseedseeveetvkeiledvreeGdealleytekFDkvkkleslrvseeeieealekldeelkealeeaaenirkfheaqkeseeevketepgvv 97 
                     r++ d++ + e++++++e+vr++G  a++e +e+FD+v+ +e+lrv++e+i+ea  +ld+++++al e++++ r++h++q++  +++++  pg +
     KIR60887.1  19 PRAQLDVSVAVERIRPLVEAVRDHGYPAIREASERFDGVS-PERLRVPAEAIAEAEGTLDPQVRAALLESISRARRVHADQRRV-DHTTQVVPGGT 112
                    57889999999**************************885.689**************************************84.456799***** PP

                    EEEEEEE-SEEEEE---STT--CHHHHHHHHHHHHHT-SEEEEEE-SS..G.G.--HHHHHHHHHCT-SEEEE--HHHHHHHHHH-.......-SS CS
  Histidinol_dh  98 lgqkvrpiervGlYvPgGkaaypStvlmnavpAkvAgvkeivvvtPpq..d.gkvnpavlaaaklagvdeiykvGGaqAiaalAyG.......tes 183
                    ++++++p+ervGlYvPgG a+ypStv+mn+vpA+ Agv+++vv++Ppq  + g ++  vlaa++l+gvde+y+vGGaqA+a+lAyG        ++
     KIR60887.1 113 VTERWVPVERVGLYVPGGLAMYPSTVVMNVVPAQAAGVRSLVVASPPQqeNgGLPDARVLAACALLGVDEVYAVGGAQAVAMLAYGatvdpdgEQR 208
                    ************************************************85258999******************************999999999* PP

                    S---SEEE---SHHHHHHHHHHCTTBEES----S-EEEEEE-TTS-HHHHHHHHHHHHTT-TT-EEEEEES-HHHHHHHHHHHHHHHCC-TTHHHH CS
  Histidinol_dh 184 ipkvdkivGPGniyVaaAKrlvsgevgiDmiaGPsEvlviaDetadpefvAaDLlsqaEHdedaqavlvttseelaeaveeevekqleelprkeia 279
                    +++vd+i+GPGni+V+aAKrl++g vgiD+ aGP+E++++aD+tadp++vAaDL+sqaEHd+ a++vlvt s +la+ave+e+++q++++++++++
     KIR60887.1 209 CDPVDMITGPGNIWVTAAKRLLRGVVGIDAEAGPTEIAILADDTADPAHVAADLISQAEHDPLAASVLVTCSVALADAVEAELARQVPATKHADRV 304
                    ************************************************************************************************ PP

                    HHHHCC.H-EEEE-SSHHHHHHHHHHH--SEEEEESTTHHHHGGG--S-SEEEESTT--HHHHHHTSSS------TTGGGT---S-GGGGEEEEEE CS
  Histidinol_dh 280 ekslek.qsaiilvedleeaielaneyApEHlelqvedpeellekiknaGaiflGeyspeslgDYaaGtnhvLPTsgtArfssglsvedFlkkisv 374
                    +++l+  qs ++lv+dle+ ++++++yA+EHle+q+e+++e++ +++naGaif+G++sp+slgDY+aG+nhvLPT+g+Ar+ssglsv++Fl+ i++
     KIR60887.1 305 TTALTGeQSGVVLVDDLEDGLRVVDAYAAEHLEIQTENAREWALRVRNAGAIFVGAWSPVSLGDYCAGSNHVLPTGGCARHSSGLSVQSFLRGIHL 400
                    ****9989**************************************************************************************** PP

                    EEE-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  Histidinol_dh 375 qelskealkelaeavetlAeaEgLeaHaeavkvRl 409
                    +e++++al+e+a++v+tlA +E+L+aH +av+vR+
     KIR60887.1 401 VEYTRDALREVAPHVVTLAGVEDLPAHGQAVSVRF 435
                    *********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3083.39
//
Query:       KIR60888.1  [L=356]
Description: histidinol-phosphate aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-57  193.2   0.0    8.9e-57  192.9   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
        0.1   11.1   0.0       0.15   10.5   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
       0.11   11.3   0.0       0.18   10.7   0.0    1.3  1  Alliinase_C      Allinase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.9   0.0   1.5e-60   8.9e-57       4     361 ..      28     351 ..      26     353 .. 0.95

  Alignments for each domain:
  == domain 1  score: 192.9 bits;  conditional E-value: 1.5e-60
                    EESSSSSTTSTTSSHHHHHHHHHHHH.HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEE CS
  Aminotran_1_2   4 inLgsneylgdsgkptlpevakaeke.galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilv 98 
                    + L++ne+++     ++++va a  +  a++ ++ln+y++ d + +l+ +la +lg    + l+ e +v+  +G++++++ l +++   pg+  l 
     KIR60888.1  28 VRLNTNENSYP----VPEAVADAIGKaLAAELRDLNRYPDRD-AVALRADLAAYLG----HGLTVE-QVWAANGSNEIQQQLLQAF-GGPGRTALG 112
                    6799******9....999999999999***************.*************....889999.*******************.7******** PP

                    EESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCB CS
  Aminotran_1_2  99 pdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfv 194
                    ++p y+++   +  +g  +v+       df+l++++  ++++++     ++ v++++sp+NPtGt+++++ + ++    ++   +++vDeaYa+f+
     KIR60888.1 113 FTPAYSMHPLLALGAGTRWVPAQ--RGVDFGLTADEAVAQVRTH-----RPDVVFLCSPNNPTGTALDPAVVAAV---LDAAPGMVVVDEAYAEFA 198
                    *********************99..569**************96.....779***********************...666679************ PP

                    SSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 195 fgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelrd 290
                        + v+++a +  +p l++++++sKafG aG R+Gy+++++avv +++ +  p+  s+l+qaa+ aal + +     l ++++ +  +r+++++
     KIR60888.1 199 RP--GTVSALAVLPGHPRLVVTRTMSKAFGFAGGRLGYLAADPAVVAAVQLVRLPYHLSALTQAAARAALAHRD----ALLATVEAIMGQRDRIVA 288
                    *9..45666888888888******************************************************99....99**************** PP

                    HHHHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHH CS
  Aminotran_1_2 291 eLaelglkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelve 361
                    eL++ gl v +s+++++l++++  +    ++++Lle+ gv+v+    +++pg+lR+t   +t++e + +++
     KIR60888.1 289 ELRARGLRVADSDANFVLFQVGGDQ--AVAWRALLEQ-GVLVRD---VGLPGWLRVTA--GTPAETDAFLT 351
                    **********************999..899*******.******...999********..99999988776 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.6e-05      0.15     126     176 ..     144     194 ..     132     207 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.6e-05
                      SHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTT CS
  Cys_Met_Meta_PP 126 dleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntf 176
                        e+++++ +++ ++v+l +p np+   +D + +a++  +a  +vvvD ++
       KIR60888.1 144 ADEAVAQVRTHRPDVVFLCSPNNPTGTALDPAVVAAVLDAAPGMVVVDEAY 194
                      45788889999*************************************976 PP

>> Alliinase_C  Allinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.9e-05      0.18     137     205 ..     155     234 ..     137     282 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.9e-05
                  S-EEEEEESS-TTT--.------....-TT-EEEEEE-TT-.S..T.TTS---S-B-..-SEEEEEHHHHHS-GGG-EEE CS
  Alliinase_C 137 eefielvtsPnnPdgl.lreavv....kgseakviyDlayY.W..P.hytpitskad..edimLftlskltGhaGsrlGW 205
                  ++ + +  sPnnP g+ l  avv    +   + v++D ay  +  P   +++         ++  t+sk  G aG rlG+
   KIR60888.1 155 RPDVVFLCSPNNPTGTaLDPAVVaavlDAAPGMVVVDEAYAeFarPgTVSALAVLPGhpRLVVTRTMSKAFGFAGGRLGY 234
                  56677889*****99634434434433999999******953311312333333333114477789*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2543.32
//
Query:       KIR60889.1  [L=203]
Description: imidazoleglycerol-phosphate dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-58  196.4   0.2    4.1e-58  195.8   0.1    1.3  2  IGPD      Imidazoleglycerol-phosphate dehydratase
  ------ inclusion threshold ------
      0.041   13.1   0.0      0.056   12.7   0.0    1.1  1  DS        Deoxyhypusine synthase


Domain annotation for each model (and alignments):
>> IGPD  Imidazoleglycerol-phosphate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.5   1.3e+04      69      81 ..      12      24 ..       3      28 .. 0.62
   2 !  195.8   0.1   4.6e-62   4.1e-58       1     144 []      32     182 ..      32     182 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.5
                TTEEEEEEEE--S CS
        IGPD 69 Dealaevaldlsg 81
                 e+ + v +dl g
  KIR60889.1 12 KETKVLVEIDLDG 24
                4666666666665 PP

  == domain 2  score: 195.8 bits;  conditional E-value: 4.6e-62
                 ....HHHHHHHHHHHHHT--EEEEEEESSH...HHHHHHHHHHHHHHHHHHS..-SSB--EEEEEEEETTEEEEEEEE--SS-EEE--..-SB--TT.. CS
        IGPD   1 TgigfldhmLdqlakhggfdlkvkvkgdlevddHhtvedvgialGqalkealgdkrgikRfgsallpmDealaevaldlsgrpylvleaelkrekig.e 98 
                 Tg+gf+dhmL+q+a+hggfdl+v++ gdle+d+Hht+ed+++alG a+++algdk+gi+R+gsa++pmDe+l+++a+dlsgrpy+v++     ++ig  
  KIR60889.1  32 TGVGFYDHMLHQIARHGGFDLTVRTVGDLEIDAHHTMEDTALALGAAFDQALGDKAGIRRYGSATVPMDEVLVRAAVDLSGRPYVVHDEPALAPYIGpV 130
                 9***************************************************************************************99999****55 PP

                 --HHHHHHHHHHHHHHHT-EEEEEEEE--B......HHHHHHHHHHHHHHHH CS
        IGPD  99 ldtelveeffeslaeaagitlhvkvlrgen......ahhivealfKafaraL 144
                 + t+++++++es+ +aa+itlhv+vlr         ahh+vea+fKa++raL
  KIR60889.1 131 YPTSMTRHIWESFGQAARITLHVDVLRAARpgghpdAHHVVEAQFKAVSRAL 182
                 9*************************98766666669**************8 PP

>> DS  Deoxyhypusine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.2e-06     0.056      49     112 ..      39     102 ..      24     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.2e-06
          DS  49 eiiadlvkeklvdvivtTaggieeDlikalgkktylgdfelddeeL.rekginRignllvpneny 112
                 ++++++++++ +d+ v T g +e D+++++++ t l+   + d++L  + gi R g   vp ++ 
  KIR60889.1  39 HMLHQIARHGGFDLTVRTVGDLEIDAHHTMED-TALALGAAFDQALgDKAGIRRYGSATVPMDEV 102
                 678999************************99.777777777777725669*****999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1505.51
//
Query:       KIR60890.1  [L=214]
Description: imidazole glycerol phosphate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-18   66.0   0.0    4.7e-18   65.6   0.0    1.1  1  GATase         Glutamine amidotransferase class-I
    4.7e-06   26.4   0.0    6.2e-06   25.9   0.0    1.1  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
    4.8e-05   23.3   0.1    0.00046   20.1   0.1    1.9  1  SNO            SNO glutamine amidotransferase family
     0.0025   17.6   0.9     0.0025   17.6   0.9    1.6  2  DJ-1_PfpI      DJ-1/PfpI family
     0.0027   17.5   0.9     0.0098   15.7   0.9    1.9  1  Peptidase_C26  Peptidase C26


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.3e-21   4.7e-18       2     184 ..      10     204 ..       9     208 .. 0.80

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 1.3e-21
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.......TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTT.EE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.......vegkieaikearenkiPiLGICLGmQllaiefgr.kv 92 
                 ++D+++++ ++ ++al+++g++v+v   d         +  +dg++v +G+g+ +       + g+  +i e   ++ P+LGIC GmQ+l++   +   
  KIR60890.1  10 VLDYGSGNLRSAERALARAGADVTVTA-D--LAA----AAAADGLVV-PGVGAYAacmagieALGAGPVIAERVAAGRPVLGICVGMQVLFEHGDEhG- 99 
                 89**********************988.3..222....235788776.6788888899888844555555555556***************9888752. PP

                 E...............EEECEEEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESG.CHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTT CS
      GATase  93 v...............kekekehhggtmrlgddetallyglknevierhrHryevnpk.elepaglevtakseddeelmeiiekknpfvgvQFHPEsts 175
                 v               ++ + +h+g++      ++ l+ gl+ + + ++ H+y v ++ +l  +g  vt ++ +   +++++e+   + + QFHPE++ 
  KIR60890.1 100 VvtkglgllpgavtrlPAARLPHMGWNTVRPPASSVLFAGLPADSRFYFVHSYGVVDAgALAASGAAVTTAHHEA-DFVAAVERGA-LSAAQFHPEKSA 196
                 33556666666667888888*******99999899********************99999999999999999776.79****9998.9********987 PP

                 STTHHHHHH CS
      GATase 176 tpegpellf 184
                   + ++ll+
  KIR60890.1 197 DSG-AALLR 204
                 654.55555 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.7e-09   6.2e-06      36     115 ..      39     112 ..      12     129 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.7e-09
    GATase_3  36 slgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeeiedpegvegeageveglglLdiet 115
                 + ++ ad +++pG   +++ +a  ++ g    i+e ++ag+pvlgiC G+q+L e+  d++gv       +glglL+  +
  KIR60890.1  39 AAAAAADGLVVPGVGAYAACMAGIEALGAGPVIAERVAAGRPVLGICVGMQVLFEH-GDEHGV-----VTKGLGLLPGAV 112
                 233569****************99999***************************99.677889.....9*******9765 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   1.3e-07   0.00046       6     174 ..      16     197 ..      13     206 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.3e-07
                 SSHHHHHHHHHHTTSEEEEE-SGGGGCC-SEEEE-S.S-HHHHHHHHHHTT-HHHHHHHHHTT.--EEEETHHHHHHCCEETTB..SS-SS--CCEEEE CS
         SNO   6 GaveehveaikkclaenktvkrkedlaevdaliiPG.GestamskliertglyedllefvknsekvvlGtCaGlillskelene..lvktlellkvkvk 101
                 G+++  ++a+ +++a+  +  +    a  d+l++PG G  +a    ie  g  + + e v+ + ++vlG C G+ +l ++ +++    k l+ll   v 
  KIR60890.1  16 GNLRSAERALARAGADVTVTADLAAAAAADGLVVPGvGAYAACMAGIEALGAGPVIAERVAAG-RPVLGICVGMQVLFEHGDEHgvVTKGLGLLPGAVT 113
                 777888999999999999999999999********966667777789999*99********99.**********9888877766556688999999999 PP

                 TTTT-S.......CCGEEEEEEEETTTCSEEEEEESS--EEEE..E-.TTTCEEEE.ECTTEEEEEE.ETTEEEESS-GGGSTT CS
         SNO 102 rnafGr.......qvdsfekeldfknliekftavfiraPviee..ilddeavkvly.eldgeivvak.qkkilatsfhPelaed 174
                 r    r        v     ++ f +l  +    f+ +  +    +l      v + +++ + v+a  ++ + a  fhPe + d
  KIR60890.1 114 RLPAARlphmgwnTVRPPASSVLFAGLPADSRFYFVHSYGVVDagALAASGAAVTTaHHEADFVAAVeRGALSAAQFHPEKSAD 197
                 876555222211234455566677777766666666654443301333333333330333567766635577777788876654 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.9     7e-07    0.0025      44     111 ..      28      95 ..       8     102 .. 0.84
   2 ?   -2.2   0.0      0.89   3.2e+03      26     100 ..     163     180 ..     154     197 .. 0.54

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 7e-07
                 TSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHH..HHHHHHHTT-EEEEETTTHHHHHHTT CS
   DJ-1_PfpI  44 rGlkvtvdaslddvkaaeyDalvlpGGragperlrenekvve..lvkefaekgklvaaICagpqlLaaag 111
                  G++vtv+a l   +aa+ D lv+pG  a + +++  e++++  ++ e + +g++v  IC g q+L ++g
  KIR60890.1  28 AGADVTVTADLA--AAAAADGLVVPGVGAYAACMAGIEALGAgpVIAERVAAGRPVLGICVGMQVLFEHG 95 
                 567777777666..56689*******88889**999996654339**********************998 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.89
                 TTEEEEEEESSTSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EEEEE CS
   DJ-1_PfpI  26 agikvdvvsvdkeevkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaekgklvaaI 100
                  g +v+++                                                           ++  vaa+
  KIR60890.1 163 SGAAVTTAHH---------------------------------------------------------EADFVAAV 180
                 4444444444.........................................................44444444 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.9   2.7e-06    0.0098      97     216 .]      70     193 ..      66     193 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.7e-06
  Peptidase_C26  97 LiraalergvPilgiCrGlqllnvalGGtlyqdiee....qsgltdhreheq..saashavkvekgsllaellgseeievnslHhqaike....la 182
                    +i++ +++g P+lgiC G+q+l     G+ +  + +     +g +    + +       +v+   +s+l   l   + +   +H+ ++ +     a
     KIR60890.1  70 VIAERVAAGRPVLGICVGMQVL--FEHGDEHGVVTKglglLPGAVTRLPAARlpHMGWNTVRPPASSVLFAGLP-ADSRFYFVHSYGVVDagalAA 162
                    6889999**************9..33344444444311113333322222224455566677666666666665.555666666666655454433 PP

  Peptidase_C26 183 eelrv.eAvaeDgviEaieseeakafvlgvQwHPE 216
                    ++  v +A+ e + + a+e  +    + + Q+HPE
     KIR60890.1 163 SGAAVtTAHHEADFVAAVERGA----LSAAQFHPE 193
                    3444313444466666665555....457777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1497.40
//
Query:       KIR60891.1  [L=107]
Description: hypothetical protein TK50_24020 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.29   10.7   3.9       0.42   10.2   3.9    1.1  1  Wzy_C     O-Antigen ligase


Domain annotation for each model (and alignments):
>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.9   2.3e-05      0.42      15      58 ..      59     102 ..      55     106 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 2.3e-05
       Wzy_C  15 sRsgiigllvalivlliifykrripfllllgilvgvilliilfv 58 
                  R++i+gl +  +v+++ f+  + ++++l+++l++v+ ++++++
  KIR60891.1  59 ERAAIVGLTGVALVAIWSFVDDLALRVVLVVLLLLVLPAAVVIA 102
                 69**********************55555555555554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1097  (0.0611858); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 759.16
//
Query:       KIR60892.1  [L=241]
Description: phosphoribosyl isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-63  214.6   0.2    1.4e-63  214.4   0.2    1.0  1  His_biosynth  Histidine biosynthesis protein
      3e-05   23.3   0.0      0.013   14.6   0.0    2.1  2  Dus           Dihydrouridine synthase (Dus)
    4.4e-05   23.0   5.4      0.021   14.2   1.5    2.1  2  NMO           Nitronate monooxygenase
  ------ inclusion threshold ------
      0.012   14.8   0.1          2    7.6   0.0    2.1  2  DHO_dh        Dihydroorotate dehydrogenase
      0.039   12.9   1.2        4.5    6.2   0.4    2.1  2  IMPDH         IMP dehydrogenase / GMP reductase domain
        6.7    5.6   9.5        6.5    5.7   1.7    2.4  3  FMN_dh        FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.4   0.2   4.7e-67   1.4e-63       2     229 .]       5     230 ..       4     230 .. 0.97

  Alignments for each domain:
  == domain 1  score: 214.4 bits;  conditional E-value: 4.7e-67
                   EEEEEEEETTEEEEECTTCSTCEEEETTSHHHHHHHHHHHT-SEEEEEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SE CS
  His_biosynth   2 iipalDlkdGkvVrlvkGdrfqelryagdpvelakryeeegadelhvvDldaakegreanldlveeiaeevfipvqvGGGIrsledveelleagadk 98 
                   ++pa+D+ dG++Vrlv+G   +e+ y gdp+e+a +++++ga+++h+vDldaa+ gr+ n +l++ ++ +++++v++ GGIr+  +++++l  ga +
    KIR60892.1   5 LLPAVDVADGQAVRLVQGAAGSETAY-GDPLEAALAWQRDGAEWIHLVDLDAAF-GRGSNAALLADVVGRLDVQVELSGGIRDDASLRAALGTGAAR 99 
                   78******************666665.9*************************8.****************************************** PP

                   EEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEECEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---HHHHHHHHHHHSSEEE CS
  His_biosynth  99 viigtaavknpelikelaekfgsqkivvaiDarrgykvaikgwreetgldavelakkleelgageilltdidrdGtlsGpdleltkelaeavkipvi 195
                   v igtaa+++p+++++++ ++g+ ++++++D+r    +  +gw+++ g d+ e++++l+++ga+++++tdi +dGt+ Gp+l+l++e++++++ pvi
    KIR60892.1 100 VNIGTAALEDPQWCDRVCGEYGD-RVAIGLDVRGR-TLSARGWTRD-GGDLYEVLERLDKAGASRYVVTDITKDGTMRGPNLDLLREVCSRTDAPVI 193
                   ***********************.*********99.9*********.************************************************** PP

                   EESS--SHHHHHHHH...HTTCSEEEESHHHHTTSS- CS
  His_biosynth 196 asGGvgsledlkelk...segvdavivgsalyegelt 229
                   asGGv++l+dl++l+     gv++vi+g+aly g +t
    KIR60892.1 194 ASGGVSTLDDLRALAtlePVGVEGVIAGKALYAGAFT 230
                   *************998878899***********9885 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0011       3.3     177     224 ..      68     114 ..      61     125 .. 0.88
   2 !   14.6   0.0   4.3e-06     0.013     133     217 ..     140     225 ..     132     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0011
                 HHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHH CS
         Dus 177 evkqavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfa 224
                 +v  ++ + v   G+I+d  +++a+l   Ga  v ig +al++P   +
  KIR60892.1  68 DVVGRLDVQVELSGGIRDDASLRAALGT-GAARVNIGTAALEDPQWCD 114
                 566678899999**************87.***************8776 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 4.3e-06
                 SSTTTC.HHHHHHHHHHCT-SEEEEESSECCCTT-CG--CHHHHHHHHH-SS-EEEESS--SHHHHH..HHHHHH--SEEEESCHHC CS
         Dus 133 iddeeenalelakiveaaGaqaltvHgRtraqnyegtadweaIkevkqavsipviaNGdIkdaedaq..aileetGadgvmigrgal 217
                 +  +  ++ e+ +++ +aGa   +v   t+    +g+ +++  +ev+ +   pvia G++ +++d++  a le  G++gv++g++ +
  KIR60892.1 140 WTRDGGDLYEVLERLDKAGASRYVVTDITKDGTMRGP-NLDLLREVCSRTDAPVIASGGVSTLDDLRalATLEPVGVEGVIAGKALY 225
                 5555556778888888888888888777877777775.788899*******************99762257999*********9987 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   1.5   7.1e-06     0.021     180     226 ..      61     107 ..      54     109 .. 0.89
   2 !   10.7   0.1   8.6e-05      0.26     167     222 ..     170     221 ..     149     229 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.1e-06
         NMO 180 glfaLvpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqigtrfL 226
                 +  aL++ v+  +d+ v   GGi d   + aaL  GA+ v igt+ L
  KIR60892.1  61 SNAALLADVVGRLDVQVELSGGIRDDASLRAALGTGAARVNIGTAAL 107
                 5678899999999999999*************************966 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 8.6e-05
         NMO 167 aGGhqGtpevgdkglfaLvpqvldavdiPviAaGGiidrrgvaaaLal...GAsgvqig 222
                  G ++G p       + L+ +v +  d PviA GG+ +  ++ a  +l   G +gv  g
  KIR60892.1 170 DGTMRG-P------NLDLLREVCSRTDAPVIASGGVSTLDDLRALATLepvGVEGVIAG 221
                 455555.2......4679999***************99999988766423366666665 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0029       8.7     250     290 ..      80     119 ..      63     124 .. 0.79
   2 ?    7.6   0.0   0.00065         2     231     258 ..     178     203 ..     171     240 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0029
                 ESS--SHHHHHHHHHHTECEEEESHHHHHHGTCHHHHHHHH CS
      DHO_dh 250 vGGiesgeDalekieaGAslvqvytalvfegpkiakkikke 290
                 +GGi         +  GA+ v+++ta   e+p+++++++ e
  KIR60892.1  80 SGGIRDDASLRAALGTGAARVNIGTAA-LEDPQWCDRVCGE 119
                 6788766666677889**********9.9*********977 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00065
                 HHHHHHHHHHTTT.S-EEEESS--SHHH CS
      DHO_dh 231 lkvirelykrlkkeipiIgvGGiesgeD 258
                 l ++re+ +r++   p+I++GG+++ +D
  KIR60892.1 178 LDLLREVCSRTD--APVIASGGVSTLDD 203
                 678999999999..9**********998 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.4    0.0015       4.5     200     237 ..      67     104 ..      53     108 .. 0.85
   2 ?    5.4   0.0    0.0026       7.7     201     239 ..     183     224 ..     176     229 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0015
                 HHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 200 aeaakkagvpviaDGGikysgdivkAlaaGadavmlGs 237
                 a+++ + +v+v   GGi+ +  +  Al  Ga  v +G 
  KIR60892.1  67 ADVVGRLDVQVELSGGIRDDASLRAALGTGAARVNIGT 104
                 6777888999999*********************9996 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0026
                 HHHCTCT-EEEEES---SHHHHHHHHH....TT-SEEEESCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxx RF
       IMPDH 201 eaakkagvpviaDGGikysgdivkAla....aGadavmlGsll 239
                 e++++++ pvia GG+++  d+ +Ala    +G + v+ G+ l
  KIR60892.1 183 EVCSRTDAPVIASGGVSTLDDL-RALAtlepVGVEGVIAGKAL 224
                 68999***********999886.67773344577777777654 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   1.7    0.0022       6.5     261     303 ..      66     106 ..      57     109 .. 0.83
   2 ?   -2.9   0.0      0.87   2.6e+03     119     143 ..     141     165 ..     139     174 .. 0.81
   3 ?    4.0   0.9    0.0068        20     258     321 ..     178     237 ..     173     240 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0022
                 HHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHH CS
      FMN_dh 261 LpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpf 303
                 L ++v ++  +++v ++gGir  +    Al  GA  v +G ++
  KIR60892.1  66 LADVVGRL--DVQVELSGGIRDDASLRAALGTGAARVNIGTAA 106
                 44444444..599**************************9876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.87
                 CSSHHHHHHHHHHHHHCTESEEEEE CS
      FMN_dh 119 pkdrelteellkraeaagykalvlt 143
                  +d     e+l+r  +ag++  v+t
  KIR60892.1 141 TRDGGDLYEVLERLDKAGASRYVVT 165
                 6677778899999999999988887 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0068
                 HHCHHHHHHHH..SS-EEEESS--SHHHHHHHHH....TT-SEEEESHHHHHHHHHHHHHHHHHHHHH CS
      FMN_dh 258 idvLpeiveavggrievlvDgGirrGsDvlkAla....lGAdavllGRpflyglaagGeeGvervlei 321
                 +d L e+  +   +++v+++gG+++  D l+Ala    +G ++v+ G+++       G+  v+++l++
  KIR60892.1 178 LDLLREVCSRT--DAPVIASGGVSTLDD-LRALAtlepVGVEGVIAGKALYA-----GAFTVRQALDV 237
                 56666665555..59********98655.8999955555******9999843.....44555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1711.22
//
Query:       KIR60893.1  [L=129]
Description: endoribonuclease L-PSP [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-18   66.8   0.2    1.9e-18   66.6   0.2    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.2   1.1e-22   1.9e-18       7     119 ..      14     124 ..      11     126 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 1.1e-22
                    TSSS-BSEEEETTEEEEEEE-SB-TTTSCB..-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--EEEE CS
  Ribonuc_L-PSP   7 aaapYsqavkagnlvyvsGqlpldpetgelv.egdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaParsa 101
                    a+  Ys++v+ag+  +++G +++   +g++v  gd+++qt+qal+   a+La++ga  +dvV+++++++d +   ev ++++ +f +    Pa ++
     KIR60893.1  14 ALYGYSRVVRAGDRAVTAGCTATV--DGRVVhVGDAAAQTAQALRIGLAALAEVGAGPGDVVRTRMYVTDRAYADEVGRAHNAVFGAVR--PAATL 105
                    6789***************99987..799999********************************************************5..***** PP

                    EE-SBSG.GG-SEEEEEEE CS
  Ribonuc_L-PSP 102 veVaaLp.kgakvEIeaia 119
                    v VaaL  ++ +vE+e+ a
     KIR60893.1 106 VVVAALLdPEHLVEVELEA 124
                    ***99988*******9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 930.14
//
Query:       KIR60894.1  [L=148]
Description: MarR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-13   49.1   0.0    6.2e-13   48.5   0.0    1.3  1  MarR           MarR family
    1.9e-11   44.3   0.8    3.2e-11   43.5   0.1    1.8  3  HTH_27         Winged helix DNA-binding domain
    7.8e-11   41.7   0.5    1.7e-10   40.7   0.5    1.6  1  MarR_2         MarR family
    4.3e-05   23.3   0.0    7.3e-05   22.5   0.0    1.3  1  HxlR           HxlR-like helix-turn-helix
    4.7e-05   23.3   0.0    7.6e-05   22.6   0.0    1.3  1  PadR           Transcriptional regulator PadR-like family
    7.3e-05   22.9   0.0    0.00013   22.0   0.0    1.4  1  HTH_34         Winged helix DNA-binding domain
     0.0011   19.0   0.9     0.0014   18.6   0.1    1.6  2  HTH_20         Helix-turn-helix domain
  ------ inclusion threshold ------
      0.055   13.1   0.3       0.13   11.9   0.3    1.6  1  GntR           Bacterial regulatory proteins, gntR family
       0.12   12.1   0.0       0.23   11.2   0.0    1.6  1  LexA_DNA_bind  LexA DNA binding domain


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   3.1e-16   6.2e-13       1      59 []      35      95 ..      35      95 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 3.1e-16
                --HHHHHHHHHHHHSTT..EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTSE CS
        MarR  1 ltltqfviLrilyeqgp..lsvseLakklgvskstvtrvldrLekkGlieRskspeDrRev 59
                lt++q+++L  l+e+g+  ++vseL+ +l ++++t++ +l+rLe +G + Rs+s  D R v
  KIR60894.1 35 LTYPQYLVLLVLWERGDdaPTVSELGAALRLDSGTLSPLLKRLEAAGVLVRSRSAADERRV 95
                8***************988****************************************87 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.9   1.2e+04      22      30 ..       9      17 ..       6      23 .. 0.71
   2 !   43.5   0.1   1.6e-14   3.2e-11       1      68 []      35     103 ..      35     103 .. 0.92
   3 ?   -2.8   0.0       4.6   9.3e+03      42      48 ..     123     129 ..     121     141 .. 0.60

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.9
      HTH_27 22 adlcgrlnv 30
                +++c++l+ 
  KIR60894.1  9 RQVCFALYA 17
                577887765 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 1.6e-14
      HTH_27   1 ltrqqalvLhlir.hrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                 lt++q lvL ++  + ++  + ++l  +l +++ + s  lk+L+++G+++r++++ad r++ vrlTd+G
  KIR60894.1  35 LTYPQYLVLLVLWeRGDDAPTVSELGAALRLDSGTLSPLLKRLEAAGVLVRSRSAADERRVEVRLTDAG 103
                 79******99999455555566**********************************************9 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 4.6
      HTH_27  42 LtekGLv 48 
                 Lte++L+
  KIR60894.1 123 LTEAELI 129
                 6667666 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.5   8.3e-14   1.7e-10       2      62 .]      34      94 ..      33      94 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 8.3e-14
                T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2  2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                glt  q+ vL++L  r++   tv+el ++l+l+ +++s +lkrL+aaG ++r+++ +D R+
  KIR60894.1 34 GLTYPQYLVLLVLWERGDDAPTVSELGAALRLDSGTLSPLLKRLEAAGVLVRSRSAADERR 94
                99**************99877**************************************96 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   3.7e-08   7.3e-05       8      74 ..      43     108 ..      40     113 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.7e-08
                 HHHHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHH CS
        HxlR   8 llilvellkgkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslep 74 
                 ll+l+e  +     sel +al  +   +L+  L++Le+ g++ r+       +ve +lt++Gr+l++
  KIR60894.1  43 LLVLWERGDDAPTVSELGAAL-RLDSGTLSPLLKRLEAAGVLVRSRSAADERRVEVRLTDAGRALRE 108
                 578888888888899999999.89999*************************************987 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.8e-08   7.6e-05      24      73 ..      60     107 ..      55     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.8e-08
                 TT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHH CS
        PadR  24 egllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrel 73 
                 + +l+l  G+l p+LkrLe+ g+++++++    + +r   rlTdaGr+  
  KIR60894.1  60 GAALRLDSGTLSPLLKRLEAAGVLVRSRSA--ADERRVEVRLTDAGRALR 107
                 5668999******************99886..58999999******9865 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   6.7e-08   0.00013      11      69 ..      48     107 ..      40     112 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 6.7e-08
      HTH_34  11 s..vdeadfvelkealeatdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGreaf 69 
                 +  +d  + +el +al++ +g Ls  lk Le+ag ++++ +  +  +r  +r+T++Gr+  
  KIR60894.1  48 ErgDDAPTVSELGAALRLDSGTLSPLLKRLEAAGVLVRSRSAADE-RRVEVRLTDAGRALR 107
                 4446777899****************************9999998.8999********865 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   7.2e-07    0.0014      19      58 ..      33      87 ..      18      89 .. 0.81
   2 ?   -3.6   0.1       6.3   1.3e+04      48      53 ..     123     128 ..     118     132 .. 0.57

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 7.2e-07
                H...............STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEEC CS
      HTH_20 19 L...............araegltaselaerldlskntlsyHLrvLeeagLvevvr 58
                +               +++++ t+sel ++l+l+  tls  L+ Le ag + + r
  KIR60894.1 33 FgltypqylvllvlweRGDDAPTVSELGAALRLDSGTLSPLLKRLEAAGVLVRSR 87
                455555555666678899*******************************987766 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.3
                 HHHCTT CS
      HTH_20  48 LeeagL 53 
                 L ea+L
  KIR60894.1 123 LTEAEL 128
                 445554 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   6.5e-05      0.13      19      57 ..      48      86 ..      42      90 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.5e-05
                -TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        GntR 19 rpGdkLPsereLaaefgVsrttvReALrrLeaeglverr 57
                + Gd  P+++eL a++  +  t+   L+rLea+g+++r 
  KIR60894.1 48 ERGDDAPTVSELGAALRLDSGTLSPLLKRLEAAGVLVRS 86
                678889*****************************9986 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00012      0.23      24      59 ..      52      86 ..      32      91 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
                   S---HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-G CS
  LexA_DNA_bind 24 ypPsireiaralglkSpsaveehLkaLerKGyierd 59
                    +P++ e++ al+l  + +    Lk+Le  G++ r 
     KIR60894.1 52 DAPTVSELGAALRLD-SGTLSPLLKRLEAAGVLVRS 86
                   58*************.5689999*****99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1115.65
//
Query:       KIR60895.1  [L=332]
Description: NADP-dependent oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-37  126.3   0.0    8.5e-37  125.4   0.0    1.5  1  ADH_N_2       N-terminal domain of oxidoreductase
    2.5e-21   76.0   0.2    3.8e-21   75.4   0.2    1.2  1  ADH_zinc_N    Zinc-binding dehydrogenase
    5.8e-10   40.3   0.3    1.3e-09   39.2   0.0    1.7  2  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0   1.4e-40   8.5e-37       1     108 []       5     112 ..       5     112 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 1.4e-40
     ADH_N_2   1 kqwvlkkrpegaptesdfeleeeelpelkdGevlvralylSvDPymRgrmndaksyvepvelgdvmrggavgeVveSknpdfkvGdlVvgllgwqdyav 99 
                 ++++l++rpeg pt+++f+l+e+e+p++++G+++vr++++SvDPymRgrmnd ksyv+p++l+ ++ ggavgeVv+ + +   +Gd+V++ lgw++ya+
  KIR60895.1   5 REIHLASRPEGWPTADNFRLVETEVPTPGPGQLVVRNQFMSVDPYMRGRMNDVKSYVPPFALDAPLDGGAVGEVVAGEGNGIVPGDTVLHGLGWREYAL 103
                 7899*********************************************************************************************** PP

     ADH_N_2 100 sdgkglekv 108
                  d+kg +kv
  KIR60895.1 104 LDAKGARKV 112
                 ****99876 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.2   6.3e-25   3.8e-21       1     125 [.     157     287 ..     157     295 .. 0.85

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 6.3e-25
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC..TSSEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg..gkgeee 96 
                 +vG+++ q+Ak  Ga +v++ ++s+ k+e ++ lG d++++y++  + ++++++  ++g+dv+f+ vG g+ leaa+ +l+ +Gr +v+G+   ++ +e
  KIR60895.1 157 AVGSMVGQIAKLKGAaRVVGSAGSPAKVERLRALGFDAAFDYHDGPVADQLAAAA-PNGIDVYFDNVG-GEHLEAAIGALRLHGRAAVCGMiaQYNATE 253
                 69****************************************6636778888888.9***********.**********************87666666 PP

                 .....EEHHHHHHTT-EEEEE-SSC...HHHHHHHHH CS
  ADH_zinc_N  97 .....fdlrnlllkeksilGsllgs...lreefkeal 125
                       +l+ l+ k+++++G+l+g+   lr++   ++
  KIR60895.1 254 ppaapRNLALLIGKRLTLRGFLVGDhghLRDQ---FV 287
                 776666666699************93333333...44 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.3   7.7e+03      26      55 ..     125     154 ..     105     179 .. 0.62
   2 !   39.2   0.0   2.1e-13   1.3e-09       1     133 []     190     330 ..     190     330 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.3
                   EEES-HHHHH.HHHHHHE..EEEEEEEE---- CS
  ADH_zinc_N_2  26 vldtvggealleaslkvl..pggGrlvsiggp 55 
                   vl ++g +a+ + +l+v   ++ G  v ++g 
    KIR60895.1 125 VLGMTGLTAY-AGLLDVAamRP-GESVFVSGA 154
                   5556666656.66666666444.665555543 PP

  == domain 2  score: 39.2 bits;  conditional E-value: 2.1e-13
                   TT-SEEEETTSTTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-........-H CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe...aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas.......aqa 87 
                   lG+d ++dy++  ++   aa+ ++g+Dv +d+vgge+l ea++ +l+ +Gr  + g+    +a+ +pa+ r+ + +  + l+ ++ +        + 
    KIR60895.1 190 LGFDAAFDYHDGPVAdqlAAAAPNGIDVYFDNVGGEHL-EAAIGALRLHGRAAVCGMIAQYNATEPPAAPRNLALLIGKRLT-LRGFlvgdhghLRD 284
                   89*************99977789*************99.*******888997544432223444444444555555555555.55557777798888 PP

                   HHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  88 dileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   +  +e+a ++ eG+l    + v ++++a+eA+  l  g   GK+ +
    KIR60895.1 285 QFVQEVAGWLREGRLSYDETVVDGIDAAPEAFLGLLRGDNLGKMLV 330
                   889************98777778********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2446.69
//
Query:       KIR60896.1  [L=255]
Description: imidazole glycerol phosphate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-81  273.4   0.4    1.5e-81  273.2   0.4    1.0  1  His_biosynth  Histidine biosynthesis protein
    4.9e-06   26.2  12.0     0.0066   15.9   0.5    2.1  2  NMO           Nitronate monooxygenase
    2.9e-05   23.5   6.1      0.017   14.4   0.6    2.6  3  ThiG          Thiazole biosynthesis protein ThiG
    0.00013   21.1   3.2      0.019   14.0   0.5    2.1  2  IMPDH         IMP dehydrogenase / GMP reductase domain
    0.00033   20.1   0.4      0.051   13.0   0.0    2.2  2  G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
    0.00053   19.2   0.0      0.044   12.9   0.0    2.1  2  Dus           Dihydrouridine synthase (Dus)
    0.00055   19.3   0.8       0.67    9.3   0.0    2.2  2  TMP-TENI      Thiamine monophosphate synthase
  ------ inclusion threshold ------
      0.027   13.7   2.4       0.76    8.9   0.0    2.5  3  DHO_dh        Dihydroorotate dehydrogenase


Domain annotation for each model (and alignments):
>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.2   0.4   6.9e-85   1.5e-81       1     229 []       6     239 ..       6     239 .. 0.98

  Alignments for each domain:
  == domain 1  score: 273.2 bits;  conditional E-value: 6.9e-85
                   EEEEEEEEETTEEEEECTTCSTCEEEETTSHHHHHHHHHHHT-SEEEEEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-S CS
  His_biosynth   1 riipalDlkdGkvVrlvkGdrfqelryagdpvelakryeeegadelhvvDldaakegreanldlveeiaeevfipvqvGGGIrsledveelleagad 97 
                   r+ip+lD++ G+vV   kG++f +lr+agdpvela +y+++gadel+++D++a+++ r+++ld+v+++ae+vfip++vGGG+r++ dv++ll+agad
    KIR60896.1   6 RVIPCLDVDAGRVV---KGVNFLDLRDAGDPVELAAAYDRAGADELTFLDVTASSSDRGTMLDVVRRTAESVFIPLTVGGGVRQVADVDTLLRAGAD 99 
                   79************...******************************************************************************** PP

                   EEEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEE...C.....EEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---HHHHHHH CS
  His_biosynth  98 kviigtaavknpelikelaekfgsqkivvaiDarr...g.....ykvaikgwreetgldavelakkleelgageilltdidrdGtlsGpdleltkel 186
                   kv ++taa+ +peli e+a++fg+q +v+++D+rr   g     ++v+++g+r+ tgldave+a++ +elgageill+++d+dGt++G+dlel+ ++
    KIR60896.1 100 KVGVNTAAIARPELIAEIADRFGRQVLVLSLDVRRapaGttasgFEVTTHGGRRGTGLDAVEWARRGAELGAGEILLNSMDADGTKAGFDLELIGAV 196
                   ***********************************887255666***************************************************** PP

                   HHHHSSEEEEESS--SHHHHHHHHHTTCSEEEESHHHHTTSS- CS
  His_biosynth 187 aeavkipviasGGvgsledlkelksegvdavivgsalyegelt 229
                   ++ v++pv+asGG+g+++++  + ++g+dav+++s++++gelt
    KIR60896.1 197 RAVVDVPVVASGGAGEVAHFPPAIAAGADAVLAASVFHFGELT 239
                   ****************************************986 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.5   2.9e-06    0.0066     181     228 ..      63     110 ..      52     138 .. 0.85
   2 !   14.6   5.3   7.2e-06     0.016     149     225 ..     163     233 ..     155     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.9e-06
         NMO 181 lfaLvpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqigtrfLlt 228
                  + +v + ++ v iP+   GG+ +  +v++ L++GA  v + t+ ++ 
  KIR60896.1  63 MLDVVRRTAESVFIPLTVGGGVRQVADVDTLLRAGADKVGVNTAAIAR 110
                 3467788888888******************************98765 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 7.2e-06
         NMO 149 arkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqigtrf 225
                 ar  +++Ga  + ++ ++a G +  +       ++L+  v+ +vd+Pv+A GG  +      a+a+GA +v  ++ f
  KIR60896.1 163 ARRGAELGAGEILLNSMDADGTKAGF------DLELIGAVRAVVDVPVVASGGAGEVAHFPPAIAAGADAVLAASVF 233
                 55666666666666666666655523......3579***********************************988877 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.74   1.7e+03     209     223 ..      29      43 ..      26      64 .. 0.83
   2 !   11.5   0.6   6.1e-05      0.14     167     221 ..      67     122 ..      34     130 .. 0.83
   3 !   14.4   0.6   7.8e-06     0.017     137     205 ..     163     231 ..     140     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.74
                 TSSSHHHHHHHHHHH CS
        ThiG 209 eakdpvamArafkla 223
                  a dpv++A+a+  a
  KIR60896.1  29 DAGDPVELAAAYDRA 43 
                 6899*****999876 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6.1e-05
                 HHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEESHH.HHTSSSHHHHHHHHH CS
        ThiG 167 lkiiieeakvPvivDAGigspsdaaqamelGadavllnta.vaeakdpvamArafk 221
                 ++   e++ +P+ v  G+++  d+ + +  Gad v +nta +a+ + ++++A  f 
  KIR60896.1  67 VRRTAESVFIPLTVGGGVRQVADVDTLLRAGADKVGVNTAaIARPELIAEIADRFG 122
                 4455667789****************************954888888888887765 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 7.8e-06
                 HHHHHHTT-SEBE.EBSSSTTS----S-HHHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEESH CS
        ThiG 137 arrleevGcaavm.PlaapiGsglGllnkealkiiieeakvPvivDAGigspsdaaqamelGadavllnt 205
                 arr  e+G+  ++     + G+  G  + e +  +++ ++vPv+   G g+  +   a+  Gadavl ++
  KIR60896.1 163 ARRGAELGAGEILlNSMDADGTKAGF-DLELIGAVRAVVDVPVVASGGAGEVAHFPPAIAAGADAVLAAS 231
                 55566666654440333444666665.467899999999****************************987 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1   0.00071       1.6     113     174 ..      41     103 ..      25     118 .. 0.62
   2 !   14.0   0.5   8.3e-06     0.019     205     239 ..     199     233 ..     190     245 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00071
                 HHTT-SEEE.EE-STSSSH..HHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-S CS
                 xxxxxxxxx.xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 113 veagvdvlv.vdsahghse..kvleavkeikkkveeveviaGnvataegakaLieagadavkvGi 174
                  +ag+d l+ +d++   s+  ++l++v++  ++v     ++G v + + + +L++agad v  G+
  KIR60896.1  41 DRAGADELTfLDVTASSSDrgTMLDVVRRTAESVFIPLTVGGGVRQVADVDTLLRAGADKV--GV 103
                 5566665531444333332114555555555555332357888888888888888888854..44 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 8.3e-06
                 TCT-EEEEES---SHHHHHHHHHTT-SEEEESCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 205 kagvpviaDGGikysgdivkAlaaGadavmlGsll 239
                   +vpv+a GG  +  +   A+aaGadav+  s++
  KIR60896.1 199 VVDVPVVASGGAGEVAHFPPAIAAGADAVLAASVF 233
                 569**************************998887 PP

>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.3e-05     0.051     125     167 ..      61     103 ..      60     108 .. 0.92
   2 !    5.2   0.1    0.0055        12     129     166 ..     191     228 ..     187     232 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-05
                   GGGHHHHCTSTTS...EEEEESS--SHHHHHHHCTT.SSEEEE CS
  G3P_antiterm 125 glvpkvikeikkelkipiiaGGLietkedveealkaGaiavst 167
                   g++ +v++++ +++ ip+  GG +++  dv+++l+aGa+ v +
    KIR60896.1  61 GTMLDVVRRTAESVFIPLTVGGGVRQVADVDTLLRAGADKVGV 103
                   68999*********************************99865 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0055
                   HHHCTSTTS...EEEEESS--SHHHHHHHCTT.SSEEE CS
  G3P_antiterm 129 kvikeikkelkipiiaGGLietkedveealkaGaiavs 166
                   ++i +++  +++p++a+G   +  +   a++aGa+av 
    KIR60896.1 191 ELIGAVRAVVDVPVVASGGAGEVAHFPPAIAAGADAVL 228
                   67889999****************************96 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0     2e-05     0.044     141     226 ..      34     118 ..      25     129 .. 0.80
   2 !    4.4   0.0    0.0076        17     169     213 ..     187     230 ..     154     234 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2e-05
                 HHHHHHHHHCT-SEEEEESSECCCTT-CG--CHHHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHH.H CS
         Dus 141 lelakiveaaGaqaltvHgRtraqnyegtadweaIkevkqavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfae.s 226
                 +ela +  +aGa++lt    t+    +gt  ++ ++   ++v ip+ + G+++++ d++  l+  Gad v +  +a  +P l+ae  
  KIR60896.1  34 VELAAAYDRAGADELTFLDVTASSSDRGT-MLDVVRRTAESVFIPLTVGGGVRQVADVDTLLRA-GADKVGVNTAAIARPELIAEiA 118
                 56666666666666666665555555554.4677888899999*******************99.******************9733 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0076
                 G--CHHHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEES CS
         Dus 169 tadweaIkevkqavsipviaNGdIkdaedaqaileetGadgvmig 213
                   d+e I +v+  v +pv+a G+  ++     +++  Gad+v+++
  KIR60896.1 187 GFDLELIGAVRAVVDVPVVASGGAGEVAHFPPAIAA-GADAVLAA 230
                 678899*****************9999999999998.99999875 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0003      0.67     138     178 ..      63     104 ..      32     107 .. 0.80
   2 !    8.8   0.2   0.00042      0.95     136     177 ..     187     229 ..     155     233 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0003
    TMP-TENI 138 gleglkelaealeiPvvaiGGitl.envaevleagadgvavv 178
                  l+ ++++ae++ iP+ + GG+++ ++v+++l+agad v v 
  KIR60896.1  63 MLDVVRRTAESVFIPLTVGGGVRQvADVDTLLRAGADKVGVN 104
                 57889999999***********86589**********99886 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00042
    TMP-TENI 136 plgleglkelaealeiPvvaiGGitl.envaevleagadgvav 177
                   +le++ ++++ + +Pvva GG  + ++ + +++agad v  
  KIR60896.1 187 GFDLELIGAVRAVVDVPVVASGGAGEvAHFPPAIAAGADAVLA 229
                 4579999****************97538999******999865 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00034      0.76     231     287 ..      64     117 ..      58     125 .. 0.82
   2 ?   -3.4   0.1       1.9   4.3e+03     255     267 ..     155     167 ..     137     169 .. 0.76
   3 ?    4.4   0.1    0.0083        19     231     284 ..     190     241 ..     187     248 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00034
                 HHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCHHHHH CS
      DHO_dh 231 lkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegpkiakki 287
                 l v+r+ ++ +   ip+   GG+    D+   ++aGA  v v ta +   p ++ +i
  KIR60896.1  64 LDVVRRTAESVF--IPLTVGGGVRQVADVDTLLRAGADKVGVNTAAIA-RPELIAEI 117
                 677888888888..9**99**************************954.44444455 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.9
                 SHHHHHHHHHHTE CS
      DHO_dh 255 sgeDalekieaGA 267
                 +g Da+e ++ GA
  KIR60896.1 155 TGLDAVEWARRGA 167
                 8999999999998 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0083
                 HHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCHH CS
      DHO_dh 231 lkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegpkia 284
                 l++i +++++++  +p++++GG          i aGA +v   + ++f + ++a
  KIR60896.1 190 LELIGAVRAVVD--VPVVASGGAGEVAHFPPAIAAGADAVLAASVFHFGELTVA 241
                 567788888888..*********9999999************999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1757.38
//
Query:       KIR60897.1  [L=153]
Description: hypothetical protein TK50_24055 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0059   16.6   0.0      0.012   15.7   0.0    1.5  1  HemN_C    HemN C-terminal domain


Domain annotation for each model (and alignments):
>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.5e-07     0.012      24      64 ..      48      86 ..      36      86 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.5e-07
      HemN_C 24 aafeqrfgldleellaaaleklqeqGLLeldggrlrltprG 64
                +++++++++  +++++ a+++l  +GL++ ++g +rltp G
  KIR60897.1 48 DHLNHAIPE--RQEVETAVRRLVGAGLVSVTDGWFRLTPDG 86
                578888888..4666888********************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1056.10
//
Query:       KIR60898.1  [L=485]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-28   98.8   0.0    4.2e-28   98.5   0.0    1.1  1  Aminotran_1_2   Aminotransferase class I and II
    1.8e-12   46.7   0.6    6.9e-12   44.8   0.6    2.1  1  GntR            Bacterial regulatory proteins, gntR family
    5.2e-05   22.2   0.0    7.6e-05   21.7   0.0    1.2  1  Aminotran_MocR  Alanine-glyoxylate amino-transferase
     0.0049   17.2   0.1      0.028   14.8   0.0    2.1  2  Rrf2            Transcriptional regulator
     0.0062   16.1   0.3      0.018   14.6   0.2    1.8  2  HTH_24          Winged helix-turn-helix DNA-binding
     0.0074   16.3   0.1      0.021   14.8   0.1    1.8  1  HTH_Crp_2       Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.012   15.5   0.7      0.086   12.7   0.6    2.6  2  MarR_2          MarR family
       0.02   15.0   0.4      0.097   12.8   0.4    2.3  1  HTH_28          Helix-turn-helix domain
      0.025   14.5   0.2      0.083   12.9   0.2    1.8  2  HTH_11          HTH domain
      0.086   12.8   0.0       0.23   11.4   0.0    1.6  1  MarR            MarR family
        0.1   12.7   0.1       0.24   11.5   0.1    1.6  1  Paramyxo_NS_C   Non-structural protein C
       0.33   10.8   3.5        2.4    8.1   1.3    3.2  2  HTH_AsnC-type   AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   0.0   2.8e-31   4.2e-28      19     363 .]     127     463 ..     111     463 .. 0.85

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 2.8e-31
                    HHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTT CS
  Aminotran_1_2  19 tlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsg 114
                     lp+++ a+ + +    + + y p+    el+ea+a  +    +l++ ++ ++ v+sG++++++++ +l+ l pg ++lv +pty++   +l +++
     KIR60898.1 127 LLPAARAAAED-LPRYLGGAGYHPTG-VIELREAVAAGYT-ARGLPTSPD-QIMVTSGTQHALDLVLRLA-LAPGGNVLVESPTYPNALAALAARR 217
                    45555555555.44455556676666.99********999.89*******.*******************.************************* PP

                    SEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTS CS
  Aminotran_1_2 115 gevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveee 210
                    + + +  l   +  + d++ l+  l++      ++   l+   +NPtG +++ e  e +++ a++ +  l++De + ++ ++ ++  + +a+++++
     KIR60898.1 218 ARITTHGLA-TDAAGWDADLLLGSLRQGR----PKLAYLIPDFQNPTGHLMPAELRERVVAAAHAAGTDLVIDESFVDLPLDGTELPPPVATFDRH 308
                    *98888855.6677888888888888743....4567899*****************************************97755455******* PP

                    TTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHH..HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS..TEEEECC CS
  Aminotran_1_2 211 pnllivgslsKafGlaGeRvGyilgnaavvsql..rklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael..glkvlas 302
                      ++  g++sK +   G+R+G++ ++a  v+ l  +++   + s+ l q +++  l da+ +   + ++r +l+++r+ l+d+La+   ++ v+a+
     KIR60898.1 309 SRVISIGGMSKPY-WGGLRIGWVRASAPQVQRLaaARVGVDMASPVLDQLVAVHLLADAPAI---VAARRTQLAAQRDALTDALARRlpDWRVTAP 400
                    ************9.56*********9966655500555666667888888888999999985...*******************999********* PP

                    SCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS....TTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 303 qsgmflltdlsaetakelskkLleevgvyvtpgtsftv....pgrlRitvAglteeeleelveal 363
                     +g+ l+++l+    ++l++  +eevgv + pg  f++    + +lR+ + +l++++l e+v +l
     KIR60898.1 401 RGGVTLWVELDGPISSALAR-AAEEVGVRLAPGPRFGLdgtlERFLRLPF-TLPAADLAEAVGRL 463
                    *************5555555.58999************************.**********9886 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.6   4.6e-15   6.9e-12       2      61 ..      29      88 ..      28      90 .. 0.95

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 4.6e-15
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrG 61
                y++++ ++r ++ +g+l  G +LP+ereLa+++ +srttv  A+r+L + g + +r+g G
  KIR60898.1 29 YAALAGAVRGLLADGRLPLGVRLPAERELAEALRISRTTVTAAYRQLRESGHLASRRGAG 88
                6678889999***********************************************998 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   5.1e-08   7.6e-05     174     394 ..     247     453 ..     195     472 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 5.1e-08
                     EEEEE-SSS-TTT-----HHHHHHHHT-.--SSTT-EEEEE-TTSS-BS.SSSS----HHHHHHHHT-TTSEEEEEESTTTS-TTSS-EEEEE-H CS
  Aminotran_MocR 174 kGilavpkysnptGetiseevarrlaal.kaaapdfrifaddayavhdlvaeedkdanivalardaGhpdrafvlastskitfaGaGvafvasse 267
                     k  + +p + nptG+ + +e   r++a  +aa  d  +  d+++    l  ++ + +  va         r + +   sk  + G  ++ v +s+
      KIR60898.1 247 KLAYLIPDFQNPTGHLMPAELRERVVAAaHAAGTD--LVIDESFVDLPL--DGTELPPPVAT---FDRHSRVISIGGMSKPYWGGLRIGWVRASA 334
                     556889**************887766650445555..667999975555..77776655544...44568***********************99 PP

                     HHHHHHH.HHHHHC-S---HHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSEEE---SBSS-EEEEESSS-HHHHHHHH CS
  Aminotran_MocR 268 dniawlk.kylGlqsiGpdkveqlrhvkflkdyeGlealmrdhaeliapkfeavlevleaelggaevatwteprGGyfisldtldgvakrvvkla 361
                       ++ l    +G++   p  ++ql  v++l d++ + a  r     +a + +a++++l ++l   +v   t prGG  + ++   +++    + a
      KIR60898.1 335 PQVQRLAaARVGVDMASP-VLDQLVAVHLLADAPAIVAARRT---QLAAQRDALTDALARRLPDWRV---TAPRGGVTLWVELDGPISSALARAA 422
                     999876516789988887.69*************99886554...4667789999999999998776...68*****99999999********** PP

                     HHCTEE---TTTTSSTT--.SSS-EEEE--SSS- CS
  Aminotran_MocR 362 eeaGvsltaaGatypaGed.pkdrnirlaptlpp 394
                     ee Gv+l++    +  G d   +r +rl  tlp+
      KIR60898.1 423 EEVGVRLAPG-PRF--GLDgTLERFLRLPFTLPA 453
                     *******884.444..333135677777666665 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.9e-05     0.028      29      65 ..      55      90 ..      50      98 .. 0.90
   2 ?   -1.4   0.0       2.1   3.1e+03       3      24 ..     177     198 ..     176     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.9e-05
                HHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCE CS
        Rrf2 29 eeiaerqnispsylekilakLrkaglvksvrGkgGGy 65
                +e+ae   is++ +    ++Lr++g + s+rG+ G +
  KIR60898.1 55 RELAEALRISRTTVTAAYRQLRESGHLASRRGA-GSW 90
                69******************************9.544 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.1
                 --HHHHHHHHHHHHHHHSSTCC CS
        Rrf2   3 lsskteyalhallyLakeeeee 24 
                 ++s t+ al ++l La+ ++++
  KIR60898.1 177 VTSGTQHALDLVLRLALAPGGN 198
                 7899999*********999876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.2   1.2e-05     0.018      21      45 ..      55      79 ..      54      79 .. 0.97
   2 ?   -2.8   0.0       3.4     5e+03      20      28 ..     453     461 ..     451     461 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.2e-05
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeG 45
                reLAe+l +S++tv++  ++L e+G
  KIR60898.1 55 RELAEALRISRTTVTAAYRQLRESG 79
                8*********************998 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.4
      HTH_24  20 qreLAerlg 28 
                  ++LAe++g
  KIR60898.1 453 AADLAEAVG 461
                 689****98 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.4e-05     0.021      24      54 ..      54      85 ..       9      92 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.4e-05
                HHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET CS
   HTH_Crp_2 24 qeelAsmlGltretvsrilseLkreglis.rg 54
                 +elA+ l ++r tv+ + ++L++ g +  r+
  KIR60898.1 54 ERELAEALRISRTTVTAAYRQLRESGHLAsRR 85
                579***********************998543 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.6   5.7e-05     0.086      25      56 ..      55      86 ..      36      89 .. 0.90
   2 ?   -3.2   0.0       5.6   8.4e+03      42      53 ..     155     166 ..     155     172 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.7e-05
                HHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 25 gelarrlglsksavsrilkrLvaaGLverrpg 56
                +ela++l++s+ +v+ + + L + G++  r+g
  KIR60898.1 55 RELAEALRISRTTVTAAYRQLRESGHLASRRG 86
                69************************998887 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.6
                 HHHHHHTTSEEE CS
      MarR_2  42 lkrLvaaGLver 53 
                 l+++vaaG+  r
  KIR60898.1 155 LREAVAAGYTAR 166
                 688999999765 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   6.5e-05     0.097      16      50 ..      55      87 ..      39      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.5e-05
      HTH_28 16 reaArelgisrrtvyrWikryeegGiagLvprrrr 50
                re+A++l isr+tv    ++++e G   L+ rr++
  KIR60898.1 55 RELAEALRISRTTVTAAYRQLRESG--HLASRRGA 87
                68*********************99..47777775 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   5.5e-05     0.083      20      53 ..      56      88 ..      55      88 .. 0.91
   2 ?   -3.3   0.0         6     9e+03      10      24 ..     445     459 ..     441     461 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.5e-05
      HTH_11 20 eLAeeLnvSrrtvrrdIkaLeelgvpIesepgrG 53
                eLAe L +Sr+tv    ++L+e+g  + s++g G
  KIR60898.1 56 ELAEALRISRTTVTAAYRQLRESG-HLASRRGAG 88
                9***********************.888888866 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6
      HTH_11  10 leargpisgeeLAee 24 
                 l+   ++++++LAe 
  KIR60898.1 445 LRLPFTLPAADLAEA 459
                 566667999****96 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00015      0.23      21      50 ..      55      84 ..      49      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
                HHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        MarR 21 seLakklgvskstvtrvldrLekkGlieRs 50
                 eLa++l +s++tvt + ++L + G + ++
  KIR60898.1 55 RELAEALRISRTTVTAAYRQLRESGHLASR 84
                59*******************999977665 PP

>> Paramyxo_NS_C  Non-structural protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00016      0.24      28      61 ..     331     364 ..     318     379 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
  Paramyxo_NS_C  28 rtepparkrrqavrvsanhasqqldqlkavhlas 61 
                    r+  p  +r  a rv  + as  ldql avhl +
     KIR60898.1 331 RASAPQVQRLAAARVGVDMASPVLDQLVAVHLLA 364
                    77889999***********************965 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.3    0.0016       2.4      21      42 .]      55      76 ..      50      76 .. 0.95
   2 ?    0.6   0.0      0.35   5.2e+02      18      28 ..     451     461 ..     450     462 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0016
  HTH_AsnC-type 21 aeLAervGlSestvlrRvrrLe 42
                   +eLAe++ +S++tv + +r+L+
     KIR60898.1 55 RELAEALRISRTTVTAAYRQLR 76
                   79***************99996 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.35
  HTH_AsnC-type  18 isyaeLAervG 28 
                    ++ a+LAe+vG
     KIR60898.1 451 LPAADLAEAVG 461
                    589*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3346.99
//
Query:       KIR60899.1  [L=434]
Description: low temperature requirement protein A [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-79  267.2  41.5    2.9e-79  266.8  41.5    1.0  1  LtrA      Bacterial low temperature requirement A protein (Lt


Domain annotation for each model (and alignments):
>> LtrA  Bacterial low temperature requirement A protein (LtrA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.8  41.5   1.6e-83   2.9e-79       1     353 []      18     398 ..      18     398 .. 0.93

  Alignments for each domain:
  == domain 1  score: 266.8 bits;  conditional E-value: 1.6e-83
        LtrA   1 rvswlELFFDLvfVvavtqlthalahdltgegllrflllffavwwaWvgftwlanrfdtddvvvrllllvqmaavlvlalsipeafeerg......lvf 93 
                 r ++lELF+DLvfV+a+ ++t   +  ++  +l r+ll++ ++ww+W gf+ l n+++ d++   l+ +v++aa ++lals+p af +r+      lvf
  KIR60899.1  18 RTTRLELFYDLVFVYAFLNVTTLTVYYPSPVNLCRCLLVLGLLWWCWTGFAGLGNAVRADQGILPLVGFVTIAATFLLALSMPGAFTDRPgglngpLVF 116
                 5799*********************************************************************************************** PP

        LtrA  94 alayvvmrlvlvlqylraaradpklsarrlarvyaagllisavlwlagallpgs.........arlvlwlvallielllvPllarkrttpvhaeHlaER 183
                 a +y+++r+ +++++ ++ar dp    rr+a + a   +++a+l++a+al+p +         ++l++w++al +e+++   l+  + + v+a+H+aER
  KIR60899.1 117 ASCYFLVRASQLAVFGWVARGDPVR-LRRWAWL-AGLPVVAAALLVAAALVPPRiahdgtataLQLAFWAAALTLEYVAGTSLGGAYWVVVSAGHWAER 213
                 ***********************75.5777777.77779999999999999988999999999**************543444444559********** PP

        LtrA 184 ygLfvIIaLGEsvvalgag...lseqelsvevllaavlglvlaaalwwlYFdvdaaaaehaltsar....rarlarsaygylhllivagiillavglel 275
                 ++L+v+IaLGEs++alg g   +++ +l+++v++aav g+++aa+lww+YFdv a a e+al++ar    rarlar+ay+ylhl+iv g+i +a+g++ 
  KIR60899.1 214 HALMVLIALGESIIALGLGskfVTGLPLTWPVVVAAVTGIAIAATLWWAYFDVLALAVEQALHRARdpvaRARLARDAYTYLHLPIVTGVIFFALGIKD 312
                 ***************776511166777************************************************************************ PP

        LtrA 276 ll........ahpeelldlaaalllfggvalfllgllllkrvllgsvslsrlvllllllallalalvlaallalallalvllllaa 353
                 ll            e+l ++++l+l+ggv l+l++l++  +++l+++++  +v+++ll++l +la+ + al al+ll +v+++l++
  KIR60899.1 313 LLveaadptsPAWGEPLGAFWILVLYGGVGLYLISLVACGVRVLRVLRWPPVVAVALLALLSPLAARIGALHALLLLGVVCVALVV 398
                 *****9998844567899***********************************************************999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3052.85
//
Query:       KIR60900.1  [L=608]
Description: AMP-dependent synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-89  300.4   0.0    2.5e-89  299.8   0.0    1.3  1  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.8   0.0   1.4e-93   2.5e-89       3     422 ..      16     471 ..      14     472 .. 0.84

  Alignments for each domain:
  == domain 1  score: 299.8 bits;  conditional E-value: 1.4e-93
                  HHHHHSTTSEEEEE....CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTES CS
  AMP-binding   3 eqaaktpdkvalvd....sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseak 96 
                  +++a tpd++a+      + +  +lT++++ +r++++AagL  lGv+++d Vail+ ++++wv+a+++i+ aG+++ +++pt+ +e+  yi++ds+++
   KIR60900.1  16 KRVAATPDRPAFAHpapdDSGPVWLTWAQVGQRARAVAAGLHGLGVGREDPVAILSSTRLDWVLADFGIMCAGGATTTVYPTTEPEDATYIVADSGSR 113
                  67899*******779999888***************************************************************************** PP

                  EEEETCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS............-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEH CS
  AMP-binding  97 vliatvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekae............kpeeeeelkpddlayiiYTSGTTGkPKGVmlsh 181
                  vl+   ++ + ++kl+ a  +l+a ++v++ d  + + +  +++ + +e +++            + + ++ l pd+la++iYTSGTTG+PKGV l h
   KIR60900.1 114 VLF--AENPAqAAKLAGA--TLPALTHVVLFDGTPDPAA-AVPQLTLAELEERgartladdpeliE-RLTADLGPDHLATLIYTSGTTGRPKGVELLH 205
                  ***..6777656666554..4789999988887776655.55555544444325678899999963.355689************************* PP

                  HHHHHHHHHHHHHHC.SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHH.C.H CS
  AMP-binding 182 rnlvanvaslkletr.fklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalk.a.a 276
                  + +++   +++   +   l++dd  + +lplah+fg  +     ll+Gat v lp+  + + + l+el++  ++t+++g+Prv+e++ ++   + + a
   KIR60900.1 206 GGWCWEGVAQA---EvGLLRDDDLQYLWLPLAHSFGK-T-----LLCGATHVGLPTYVDGRVEKLVELLAVVRPTLMCGAPRVFEKVYNKAVTTaQdA 294
                  *****988853...31336678888***********7.5.....5555555555555552334578*********************66433331221 PP

                  HHHC................................................CGTT.-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECE CS
  AMP-binding 277 kkak................................................dlss.lrlvllggeplspellrffralfgeevlegYGlTEttgvvt 325
                                                                      +l++ +r++++g++pls+e+++ff a   + ++egYGlTE ++  +
   KIR60900.1 295 ---GgakakifawgvrvgkekvaleqagrpvpaglrlryalaeklvfsklqaRLGGrIRVLVSGAAPLSKEIATFFAAANLP-ISEGYGLTESSAGNF 388
                  ...133455688888888888889999999999999999999999999999988888**9*******************875.*************97 PP

                  ECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 326 vlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                   +++++   ++g+vG+++ + e++i D +          Ge+lvrg  vm+gY+  pe ta af+ e++++rTGD+g ld+dGyl+i++Rkkdl+k+
   KIR60900.1 389 -VNPPGG-LRIGTVGRAMGDLECRI-DTD----------GEILVRGRPVMRGYHHLPEDTAAAFT-EDGFFRTGDIGSLDDDGYLRITDRKKDLVKT 471
                  .553444.489**************.877..........*************************9.867**************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4353.09
//
Query:       KIR60901.1  [L=315]
Description: terpene synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.019   13.9   0.0      0.022   13.6   0.0    1.1  1  TRI5      Trichodiene synthase (TRI5)


Domain annotation for each model (and alignments):
>> TRI5  Trichodiene synthase (TRI5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.3e-06     0.022     217     303 ..     220     314 ..     162     315 .] 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-06
        TRI5 217 nqlvlvndllsfykeydderdqinlvsnlvtvdg....itldealekltddtihackqlvavl.kdkdpkv...latirafvhGyvtwhlcdary 303
                 + ++++ndl+s+ ke     d  nlvs ++   g     +l  a e++ +    ++++  a++  d dp +   la+ r +v     w l  ary
  KIR60901.1 220 DLVCWCNDLFSYGKENRAGPDAHNLVSAIAAETGrgepAALRAAAERFNRALACYAEREAALVdADDDPALrsfLAARRNWVRATYDWSLRAARY 314
                 5689***********************99876552222677888888888888888887766525778876222455567777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2459.78
//
Query:       KIR60902.1  [L=209]
Description: hypothetical protein TK50_24085 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-05   23.7   9.9    6.4e-05   23.7   9.9    1.9  2  MDMPI_N   Mycothiol maleylpyruvate isomerase N-terminal domai
     0.0025   18.6   8.6     0.0025   18.6   8.6    2.5  3  MDMPI_C   MDMPI C-terminal domain
  ------ inclusion threshold ------
      0.043   14.4   3.5        6.2    7.5   0.0    3.1  3  HTH_32    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> MDMPI_N  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   9.9   1.1e-08   6.4e-05       2     129 ..       6     169 ..       5     173 .. 0.71
   2 ?   -2.9   0.1       1.6   9.8e+03      83      91 ..     195     203 ..     177     206 .. 0.51

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.1e-08
     MDMPI_N   2 reewaalaalvagLtdeqwaapspcpGWtvadlvaHlarsaralaaa..............................laaegaesalardaaaalvtaa 70 
                 r e++ala+l++ L     +ap+  +GW+v+dl+aHl+  +r+  aa                              +++++ +s+l+ +++++lv   
  KIR60902.1   6 RSEREALADLMQNLG---PDAPTVNEGWSVRDLAAHLVVRERRPDAAggialpplrgyaervrlrvaarpfdelvalVRRPPLWSPLSNPVTDELVNTM 101
                 67899999***9998...69***************************9999999999998888887777777777776666677777666666665555 PP

     MDMPI_N  71 d.........aeavdlaaslapeal..laafraavtrlaaalaalppdaiadrlgipggprslge.flrtr 129
                 +         + a++ + +++ +a   ++++r+a    + al+++p+d  +     + g+ s+g+  +r+r
  KIR60902.1 102 EfyihhedvrR-ARAGWGPRDLPAGldAVLWRRASVLGRLALRRFPADLLVQAP--GHGALSAGRgGPRIR 169
                 58999988853.444444443333301345566655556677888888777777..444444444455555 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.6
     MDMPI_N  83 peallaafr 91 
                 p+a ++++r
  KIR60902.1 195 PAAAVDRLR 203
                 333333333 PP

>> MDMPI_C  MDMPI C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3      0.29   1.8e+03      13      35 ..      38      61 ..       9      87 .. 0.50
   2 ?   -0.1   0.4       0.3   1.8e+03      64      79 ..     124     139 ..     111     144 .. 0.81
   3 !   18.6   8.6   4.2e-07    0.0025      10      91 .]     136     201 ..     126     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.29
     MDMPI_C 13 tvvarraaapd.srvvlelegprt 35
                ++v+r + +++  +++l++ ++ +
  KIR60902.1 38 HLVVRERRPDAaGGIALPPLRGYA 61
                333333322223222222222222 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.3
     MDMPI_C  64 adlllllwGRlspddt 79 
                 a l ++lw+R s+ ++
  KIR60902.1 124 AGLDAVLWRRASVLGR 139
                 5677899999988765 PP

  == domain 3  score: 18.6 bits;  conditional E-value: 4.2e-07
     MDMPI_C  10 llatvvarraaapdsrvvlelegprtvhlhatdggrarlalwadgadatvrGtaadlllllwGRlspddtlevdGdrallar 91 
                 +l++++ rr++a+     l ++ p + +l a+ gg          ++ +v G +++l+l l+GR  + + + v+G++a+++r
  KIR60902.1 136 VLGRLALRRFPAD-----LLVQAPGHGALSAGRGG----------PRIRVVGAPGELVLFLTGRQRVSR-VQVEGPAAAVDR 201
                 5666666666543.....66666666677777666..........46********************99.********9986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.001       6.2      31      58 ..       6      43 ..       2      52 .. 0.75
   2 ?    7.1   0.4    0.0014       8.5      23      71 ..      58     112 ..      41     114 .. 0.65
   3 ?   -2.2   0.1       1.1   6.8e+03       3      21 ..     184     202 ..     182     205 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.001
      HTH_32 31 devrariiallre.ep.......rWsprqlaarl..ae 58
                  +r+++ +l ++  p        Ws r laa+l  +e
  KIR60902.1  6 RSEREALADLMQNlGPdaptvneGWSVRDLAAHLvvRE 43
                56888889999543458889999***********5322 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0014
      HTH_32  23 rg...rpr.klsdevrariiallreeprWsprq..laarlaeregvk....vShstvyr 71 
                 rg   r r ++ ++  ++++al+r+ p Wsp    + ++l+     +    ++h+ v+r
  KIR60902.1  58 RGyaeRVRlRVAARPFDELVALVRRPPLWSPLSnpVTDELVN----TmefyIHHEDVRR 112
                 55555666789999999******8888**9954445555522....1223477777777 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.1
      HTH_32   3 srwlkRyneeGlegLkdrp 21 
                 +  + R + eG+++  dr 
  KIR60902.1 184 RQRVSRVQVEGPAAAVDRL 202
                 5556777788888887774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.30s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1425.50
//
Query:       KIR60903.1  [L=617]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-33  114.5   1.0    8.8e-33  114.1   1.0    1.1  1  ABC_membrane  ABC transporter transmembrane region
    7.1e-28   97.8   0.0    1.2e-27   97.1   0.0    1.4  1  ABC_tran      ABC transporter
     0.0003   21.2   0.5    0.00078   19.9   0.5    1.7  1  AAA_16        AAA ATPase domain
     0.0021   17.5   0.0     0.0081   15.6   0.0    1.8  1  SMC_N         RecF/RecN/SMC N terminal domain
     0.0032   17.2   0.1      0.007   16.1   0.1    1.5  1  AAA_29        P-loop containing region of AAA domain
     0.0075   16.2   0.1      0.013   15.3   0.1    1.4  1  APS_kinase    Adenylylsulphate kinase
  ------ inclusion threshold ------
      0.017   14.4   0.1      0.032   13.5   0.1    1.3  1  Zeta_toxin    Zeta toxin
      0.023   14.3   1.8       0.22   11.1   1.8    2.6  1  AAA_25        AAA domain
      0.039   13.7   0.0      0.067   13.0   0.0    1.3  1  DEAD          DEAD/DEAH box helicase
      0.054   13.8   0.0        0.2   11.9   0.0    1.9  1  AAA_22        AAA domain
      0.071   12.7   0.1       0.17   11.5   0.1    1.6  2  SRP54         SRP54-type protein, GTPase domain
       0.12   11.7   0.0       0.22   10.9   0.0    1.3  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.13   11.4   0.0       0.98    8.6   0.1    2.0  2  NB-ARC        NB-ARC domain
       0.19   11.6   0.0       0.31   10.9   0.0    1.2  1  RsgA_GTPase   RsgA GTPase
       0.25   11.8   0.1       0.38   11.2   0.1    1.1  1  AAA_23        AAA domain
       0.28   10.7   0.1       0.47   10.0   0.1    1.2  1  AAA_7         P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.1   1.0   7.8e-36   8.8e-33      10     273 ..      29     295 ..      20     296 .. 0.90

  Alignments for each domain:
  == domain 1  score: 114.1 bits;  conditional E-value: 7.8e-36
                   HHHHHHHHHHHHHHHHHHHHHSSTCCHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHH CS
  ABC_membrane  10 lagvlsplfplvlgrildtlldkgdpet....ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGells 102
                   l g+l ++ ++v g ++ ++++ + ++     +al++ + +l+++ +++++  +++     ++  rl  + rr++ ++ l++p+s++++n +G+lls
    KIR60903.1  29 LFGGLVIASAYVVGAVVGDVVVPAIARGsvgvAALALAAGALFGISVLRVVGIFGRRLGAGYMQFRLQAAYRRQVTRRYLELPLSWHQRNATGTLLS 125
                   4555556666666666666665433333445589999************************************************************ PP

                   HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTH CS
  ABC_membrane 103 rltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgre 199
                     ++dv+   +     l   +  ++++vg+++ +f++ w l+lv+la++p ++ +++++++++ + + + q  +a++s +a Es+ g  +Vk +gre
    KIR60903.1 126 NANSDVE-AAWYPIAPLPFAVGTVVMLVGAIASLFVTDWALALVGLAVFPALFALNVIYSRRMAPRQARAQRLRAEVSGIAHESFDGALVVKTMGRE 221
                   *******.334444567788999************************************************************************** PP

                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane 200 eyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfga 273
                   ++++ +f     e + a i++ +++g++ ++++ l++l ++++l++G++   +g+++v dlv +  lf++l ++
    KIR60903.1 222 AQETARFAARAGELRDALISVGRLRGVFDPMLETLPSLGTLAVLVVGAFRLRQGAITVTDLVSVAFLFTVLAFP 295
                   ********************************************************************999776 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.0   1.1e-30   1.2e-27       2     137 .]     366     514 ..     365     514 .. 0.86

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 1.1e-30
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH............HHHTC.... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxx.... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren............esdee.... 84 
                  +v++++ +g++va+vG++G+GKSt+++l  +l++p  G++ ldg d+++ +  sl    + + q p++f+++ vr n                +    
  KIR60903.1 366 GEVTFTVPAGRTVALVGPTGSGKSTIAALAVRLVDPHTGTVSLDGVDVRRLTAASLAGTAALVAQVPFVFDDT-VRANialdrpgvtdddV---Waalr 460
                 579**********************************************************************.****9999888553330...23333 PP

                 ...HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 ...iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                    ++ +++ l   e  dt v+++++sLSgGq+qr+ laral+ +p+ll+lD++t+
  KIR60903.1 461 laeADGFVAALP--EGLDTMVGERGTSLSGGQRQRLTLARALAGRPRLLVLDDATS 514
                 322444444444..367*************************************96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.5     7e-07   0.00078      21     146 ..     374     514 ..     365     543 .. 0.57

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 7e-07
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql...esa......ipy.salaqalareellrqlldeaesaeleawrekleeala... 106
                 +g  + v l+G+ G+GKs+++  + r +  +   +++ + ++    + a      +++ +++  +++     +  ld++  ++ + w++  ++++    
  KIR60903.1 374 AG--RTVALVGPTGSGKSTIAALAVRLVDPH-TGTVSLDGVDVrrlT-AaslagtAALvAQVPFVFDDTVRANIALDRPGVTDDDVWAALRLAEADgfv 468
                 44..78***************9999655555.444444444441221.212222222222244455444444444444555566666665555555777 PP

      AAA_16 107 .............avpelagaeasrllellkrllallsrderplvlvlDdlqw 146
                               + +l+g   +r + +l+r+l      +rp +lvlDd+  
  KIR60903.1 469 aalpegldtmvgeRGTSLSGG--QRQRLTLARAL----A-GRPRLLVLDDATS 514
                 777775555443333333333..55555555666....3.779*******874 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.2e-06    0.0081      26     211 ..     377     559 ..     366     565 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.2e-06
                 EEEEEESTTSSHHHHHH.HHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE..EEEEETTEEE-HH CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlld.AilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkge..seykingkevtkk 121
                   a+vGp GSGKs +   A++ v  ++ + +l   ++++l  +s ++ ++  a+v  +fd++ ++      ++ + r  +++++     ++ + +   +
  KIR60903.1 377 TVALVGPTGSGKSTIAAlAVRLVDPHTGTVSLDGVDVRRLTAASLAGTAALVAQVPFVFDDTVRA------NIALDRPGVTDDDvwAALRLAEADGFVA 469
                 6799**********9765888887778888999**********99**************999998......8999999999998677788888888889 PP

                 HHHHHHH.CTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT...SEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 122 evselle.sagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn...aQfivislreemlekadklvgv 211
                  + e l  ++g   ++LSgG+++ + la  +A     +  l +lD+  +a D +  +++   l++       a ++v++ r+ +++ ad+++ +
  KIR60903.1 470 ALPEGLDtMVGERGTSLSGGQRQRLTLARALA----GRPRLLVLDDATSAVDPRVEAAILAGLRAPAAGgpaASILVVAYRRATIALADEVIYL 559
                 9988886246777899******9777766655....455699************9999999999654433349999*********999998765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   6.2e-06     0.007      18      44 ..     371     396 ..     364     405 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.2e-06
      AAA_29  18 eidlkg.atlltGpsGsGKSTllDAiqa 44 
                 ++  +g ++ l+Gp+GsGKST+  A+++
  KIR60903.1 371 TVP-AGrTVALVGPTGSGKSTIA-ALAV 396
                 554.56699************96.5555 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.2e-05     0.013       2      45 ..     375     417 ..     374     426 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.2e-05
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTT CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgL 45 
                 g +v l G +gsGKstia al+ +Lv+  + ++ LdG  vR+  
  KIR60903.1 375 GRTVALVGPTGSGKSTIA-ALAVRLVDPHTGTVSLDGVDVRRLT 417
                 67999************9.57889****************9755 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   2.9e-05     0.032      19      57 ..     378     416 ..     370     424 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.9e-05
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldpDdlRel 57 
                 + l+G +G+GKs++a+l+ + ++++ + v ld+ d+R+l
  KIR60903.1 378 VALVGPTGSGKSTIAALAVRLVDPHTGTVSLDGVDVRRL 416
                 6799*****************************999986 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.8    0.0002      0.22      30      51 ..     372     393 ..     365     526 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
      AAA_25  30 lpagelallaGapgtGKttlal 51 
                 +pag +++l+G++g+GK+t+a 
  KIR60903.1 372 VPAGRTVALVGPTGSGKSTIAA 393
                 69*****************995 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     6e-05     0.067      13     131 ..     374     513 ..     363     531 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6e-05
                 TTCEEEEEESTTSSHHHHHHHHHHHHHHHS.........TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH.TTCS.E CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.x RF
        DEAD  13 gggdvlvaaeTGsGKTlaflipvlqivyet.........kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld.ngvd.i 100
                  g+ v + ++TGsGK+++++++v   +++           + ++  a  ++ t +L+ q+   +         ++ l   gv+ +d +++l+ +++d +
  KIR60903.1 374 AGRTVALVGPTGSGKSTIAALAVR--LVDPhtgtvsldgVDVRRLTAASLAGTAALVAQVPFVFDDTVRA---NIALDRPGVTDDDVWAALRlAEADgF 467
                 6899**************999998..32223466777666677788999999999999999888888884...44445668888888888865445515 PP

                 EEEEHHHHHHHH..........HCTSSH.....CTTEEEEEEETHH CS
                 xxxxxxxxxxxx..........xxxxxx.....xxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddll..........stgkln.....lsqvrflVlDEad 131
                 v + p+ ld ++          ++++l+       + r+lVlD a 
  KIR60903.1 468 VAALPEGLDTMVgergtslsggQRQRLTlaralAGRPRLLVLDDAT 513
                 5566777777777777777776666666333333444888888775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018       0.2       8      62 ..     378     433 ..     374     543 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee....erpevvfvtlpsstsskdllrellr 62 
                 ++++G++G+GK+t ++  ++  d +          +++v + t++s+ + + l  ++  
  KIR60903.1 378 VALVGPTGSGKSTIAALAVRLVDPHT---GtvslDGVDVRRLTAASLAGTAALVAQVPF 433
                 689************99999886432...124455555556666666655555555555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       6.6   7.4e+03      80     100 ..     205     226 ..     187     229 .. 0.63
   2 ?   11.5   0.1   0.00015      0.17       4      60 ..     378     434 ..     376     450 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6.6
                 HHTTSS.EEEEEE--SSTTHHH CS
       SRP54  80 keekid.vvlvDTaGrlqndke 100
                  +e++d +++v T Gr +++++
  KIR60903.1 205 AHESFDgALVVKTMGREAQETA 226
                 3344442677889999888876 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00015
                 EEEEESTTSSHHHHHHHHHHHHHHT.TS-EEEEEESTSSTTHHHHHHHHHHHTTEEEE CS
       SRP54   4 illvGlqGaGKTttlaKLaallkke.gkkvllvaaDtfRaaAveQLktlaeklgvpvi 60 
                 ++lvG++G+GK t  a La +l +    +v l  +D+ R  A+    t a  ++vp++
  KIR60903.1 378 VALVGPTGSGKSTI-AALAVRLVDPhTGTVSLDGVDVRRLTAASLAGTAALVAQVPFV 434
                 789********875.5577777666488999********9998766666666666655 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0002      0.22      23      79 ..     376     434 ..     367     446 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0002
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlpsllpplseeealevakiasvag..kkeeekllkrrpfr 79 
                     + lvGp GsGK+ +a+    l+ p + + +l+   ++ ++      +++l+++ pf+
    KIR60903.1 376 RTVALVGPTGSGKSTIAALAVRLVDPHTGTVSLDGVDVRRLTAasLAGTAALVAQVPFV 434
                   56889***************999999999998888877766553245566677777775 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00087      0.98      22      42 ..     377     397 ..     372     405 .. 0.86
   2 ?   -0.1   0.0      0.38   4.2e+02      93     113 ..     493     513 ..     478     525 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00087
                 EEEEEESTTSSHHHHHHHHCC CS
      NB-ARC  22 vvalvGmgGvGKttlakqiln 42 
                  valvG  G+GK+t+a+ +++
  KIR60903.1 377 TVALVGPTGSGKSTIAALAVR 397
                 589*************98776 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.38
                 HHHHHHHCCCTTEEEEEEEE- CS
      NB-ARC  93 krklvrlLltkrfllvlDDVw 113
                    l r+L ++  llvlDD  
  KIR60903.1 493 RLTLARALAGRPRLLVLDDAT 513
                 557999*****99******65 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00028      0.31      98     131 ..     374     407 ..     346     417 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00028
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktgevs 131
                  +++t++lvG++G GKSt+    +   + +tg vs
   KIR60903.1 374 AGRTVALVGPTGSGKSTIAALAVRLVDPHTGTVS 407
                  459**************98776666677777666 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00034      0.38      22      36 ..     378     392 ..     366     395 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00034
      AAA_23  22 tlItGpNGaGKTTil 36 
                 ++++Gp+G+GK+Ti 
  KIR60903.1 378 VALVGPTGSGKSTIA 392
                 689**********96 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00042      0.47      30      54 ..     372     396 ..     368     407 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00042
       AAA_7  30 lknkkpvllvGptGtGKtviikdll 54 
                 + +++ v lvGptG+GK++i+   +
  KIR60903.1 372 VPAGRTVALVGPTGSGKSTIAALAV 396
                 667899*************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 4003.61
//
Query:       KIR60904.1  [L=591]
Description: multidrug ABC transporter ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-29  101.2   0.0    1.1e-28  100.4   0.0    1.4  1  ABC_tran         ABC transporter
    5.4e-28   98.4   7.2    7.3e-28   98.0   7.2    1.1  1  ABC_membrane     ABC transporter transmembrane region
    0.00012   22.2   0.1     0.0003   21.0   0.1    1.6  2  DUF87            Helicase HerA, central domain
    0.00068   19.1   0.0      0.045   13.2   0.0    2.1  2  SMC_N            RecF/RecN/SMC N terminal domain
    0.00079   19.7   0.0      0.007   16.6   0.0    2.5  2  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.021   14.5   0.1      0.043   13.5   0.1    1.7  1  AAA_24           AAA domain
      0.056   13.2   0.1       0.13   12.1   0.1    1.6  1  AAA_29           P-loop containing region of AAA domain
      0.062   13.2   0.0       0.13   12.2   0.0    1.5  1  NACHT            NACHT domain
      0.062   12.6   1.8        0.1   11.8   0.0    2.1  3  Zeta_toxin       Zeta toxin
      0.065   12.9   0.0       0.14   11.9   0.0    1.5  1  Sigma54_activat  Sigma-54 interaction domain
      0.082   12.4   0.0       0.13   11.7   0.0    1.2  1  Pox_A32          Poxvirus A32 protein
       0.14   11.6   0.0       0.26   10.8   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
       0.17   11.7   0.0          7    6.4   0.0    2.3  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
       0.18   11.8   0.1       0.35   10.9   0.1    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.19   11.5   0.4        1.1    9.0   0.4    2.1  1  DEAD             DEAD/DEAH box helicase
        0.2   11.2   5.4       0.44   10.1   2.3    2.8  2  AAA_25           AAA domain
       0.21   12.2   0.0       0.45   11.1   0.0    1.6  1  AAA_18           AAA domain
       0.94    9.8   6.5       0.12   12.8   1.1    2.3  2  AAA_16           AAA ATPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.0   1.1e-31   1.1e-28       1     137 []     366     515 ..     366     515 .. 0.96

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 1.1e-31
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......esdeeiekalskl 92 
                 l++v+l++ + ++va+vGe+G+GK+t++kll++l++pt G +ll g +l+e +  slr+++ ++pq+ +lf+ + v++n         d+e+++a ++l
  KIR60904.1 366 LHDVTLDIAAKSRVAVVGETGSGKTTFAKLLTRLMDPTDGAVLLSGVPLTEVRFASLRSRVVMVPQDGFLFDAT-VGQNvrfarpeLTDAELTAAFTEL 463
                 789********************************************************************999.99*999999998888999999999 PP

                 TTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  93 glke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 gl +         dt+v+++++ LS G++q valara + +p+ll+lDE+t+
  KIR60904.1 464 GLADwlaglpaGLDTPVGERGEALSVGERQLVALARAYVADPDLLVLDEATS 515
                 9999999999899*************************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   7.2   7.4e-31   7.3e-28      15     274 .]      45     303 ..      32     303 .. 0.88

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 7.4e-31
                   HHHHHHHHHHHHHHHHSSTCCHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHH CS
  ABC_membrane  15 splfplvlgrildtlldkgdpetealnvy.sllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsk 110
                    +++p+  ++ +d  ++ g +    ++ +   + ++++++ + +++l  + l  ++e +   +r+++f++++ ++m   ++ + G+l+sr+t+dv++
    KIR60904.1  45 RVAVPVAVQQGIDEGIVGGLDLG--VVWTvVAATAAVLVVTTTCGYLMMRRLFTVSETALANVRTRAFRHVHDLSMLHQQSERRGSLVSRVTSDVDQ 139
                   55666666666666666322222..2222022333444455556666666669************************9999**************** PP

                   HHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHH CS
  ABC_membrane 111 lrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfe 207
                   + ++l++  ++++ +l ++ ++ +vm+ ++w+ltlv+la +   +lv+  + ++l  +  +  ++++ +   + Es+ g  +++a+g   +  ++ +
    KIR60904.1 140 ITQFLQWGGVILIVNLGQLAVTTAVMLAYSWQLTLVVLAAFAPAVLVIRQLQRRLAGAYGTVRQRMGTLLGTIGESVVGAPVIRAYGIAGRTARRLD 236
                   ************************************************************************************************* PP

                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 208 kaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                    a+e  ++a+ ++++++ l +++ +l++ l+ a + ++G+ l  +g+ls+g+l++fl l +++++++
    KIR60904.1 237 AAIEGQQRAQQRAIRISILGSSVGELAAGLALAGVVVLGVLLGVDGTLSIGQLTAFLFLVTLFIQPV 303
                   ***************************************************************9986 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.9   5.9e+03     179     214 ..     127     161 ..     100     167 .. 0.69
   2 !   21.0   0.1     3e-07    0.0003      14      46 ..     369     399 ..     364     409 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.9
       DUF87 179 ggsfsnsstdliallleklekegkitiidlsgvdel 214
                 g++  +  t+ ++++ ++l+ +g i i++l+++  +
  KIR60904.1 127 GSL-VSRVTSDVDQITQFLQWGGVILIVNLGQLAVT 161
                 333.36667777888899999999999999887655 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 3e-07
       DUF87  14 vyldlnklvtrHlAilgsTGsGKSntvavLlee 46 
                 v ld+  + + ++A++g+TGsGK++++++L + 
  KIR60904.1 369 VTLDI--AAKSRVAVVGETGSGKTTFAKLLTRL 399
                 77888..5689*****************99875 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.033        33      24      41 ..     376     393 ..     366     405 .. 0.82
   2 !   13.2   0.0   4.5e-05     0.045     136     212 ..     486     558 ..     414     563 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.033
                 SSEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnll 41 
                 ks  a+vG+ GSGK+ + 
  KIR60904.1 376 KSRVAVVGETGSGKTTFA 393
                 56789*********9875 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.5e-05
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvt 212
                 +LS Ge++Lvala       v    l +lDe  +a D +   ++ + l++ +     + i++r  + e ad+++ v 
  KIR60904.1 486 ALSVGERQLVALARA----YVADPDLLVLDEATSAVDPATEVRLQRTLDAVTRGRTTLAIAHRLSTAEAADEVIVVD 558
                 89********99754....55566699********************************************999775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       8.6   8.6e+03      42      61 ..       3      22 ..       2      25 .. 0.82
   2 !   16.6   0.0   7.1e-06     0.007       8     102 ..     379     515 ..     374     546 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 8.6
      AAA_22 42 vvfvtlpsstsskdllrell 61
                vv+ + p+++++++l+r l+
  KIR60904.1  3 VVEAEQPAENTWRTLRRGLA 22
                6788889999****998775 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 7.1e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee..........................................erpevvfvtlpsstsskdllrellral 64 
                 ++v+Ge+G+GKTt ++ l++  d      +                                          +rpe+   +l++  +   l+ +l+   
  KIR60904.1 379 VAVVGETGSGKTTFAKLLTRLMDPT----DgavllsgvpltevrfaslrsrvvmvpqdgflfdatvgqnvrfARPELTDAELTAAFTELGLADWLAGL- 472
                 689****************998643....245568888888888888887777777777777777775555555555555555555444444443332. PP

      AAA_22  65 glelka...erlsseell.ealeqalrarav..ielliiDEaqh 102
                   +l++   er++   +  ++l   +ra+ v  + ll++DEa  
  KIR60904.1 473 PAGLDTpvgERGEALSVGeRQLVALARAY-VadPDLLVLDEATS 515
                 22333333335555555533333333333.35888888888866 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   4.4e-05     0.043       2      26 ..     376     397 ..     375     528 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.4e-05
      AAA_24   2 klkiliyGpsgiGKTtlakelgpkp 26 
                 k +++++G+ g+GKTt+ak l   +
  KIR60904.1 376 KSRVAVVGETGSGKTTFAKLL---T 397
                 5699***************99...2 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00013      0.13      13      48 ..     367     402 ..     365     407 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
      AAA_29  13 dghtieidlkgatlltGpsGsGKSTllDAiqalLvp 48 
                 ++ t++i  k+ + ++G++GsGK+T+   ++ l+ p
  KIR60904.1 367 HDVTLDIAAKSRVAVVGETGSGKTTFAKLLTRLMDP 402
                 5678888888899************97666666665 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00013      0.13       2      22 ..     378     398 ..     377     406 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
                 CEEEEC-TTTCHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklal 22 
                  v++ Ge GsGKTt+++ l +
  KIR60904.1 378 RVAVVGETGSGKTTFAKLLTR 398
                 689************987765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       2.3   2.3e+03      79     107 ..      77     105 ..      71     109 .. 0.84
   2 ?   11.8   0.0    0.0001       0.1      19      50 ..     379     410 ..     369     414 .. 0.90
   3 ?   -2.3   0.0       2.3   2.3e+03     171     189 ..     543     561 ..     531     578 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.3
  Zeta_toxin  79 daselvekllqeaiengyniivegtlrsp 107
                 +a  +v++++ +++ ++   + e++l++ 
  KIR60904.1  77 AAVLVVTTTCGYLMMRRLFTVSETALANV 105
                 56678899999***************986 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.0001
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrld 50 
                 + ++G +G+GK++ a+ll++ +++++++v l+
  KIR60904.1 379 VAVVGETGSGKTTFAKLLTRLMDPTDGAVLLS 410
                 6789*********************9999886 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.3
  Zeta_toxin 171 ealeeekqldrvkikdrdg 189
                  +l ++ ++d+v+++dr++
  KIR60904.1 543 HRLSTAEAADEVIVVDRGR 561
                 3444444555555555544 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014      0.14      19      49 ..     373     403 ..     364     417 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
                      CTSSS-EEEECSTTSSHHHHHHHHHHHSTTT CS
  Sigma54_activat  19 aktdlsvlitGesGtGKellaraiheaskrk 49 
                      ++ +++v ++Ge+G+GK+++a+++ +  + +
       KIR60904.1 373 IAAKSRVAVVGETGSGKTTFAKLLTRLMDPT 403
                      56678999**************998876655 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00013      0.13      12      35 ..     375     398 ..     370     405 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
     Pox_A32  12 kpFrlalvGgsGsGktvyLlsLlr 35 
                 ++ r+a+vG++GsGkt++ + L r
  KIR60904.1 375 AKSRVAVVGETGSGKTTFAKLLTR 398
                 56799*************876644 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00026      0.26      30      60 ..     373     403 ..     368     410 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkldke 60 
                 +++k  v +vG+tG+GKt+ +k l++ +d++
  KIR60904.1 373 IAAKSRVAVVGETGSGKTTFAKLLTRLMDPT 403
                 5678899*************99998888765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.007         7       3      22 ..     380     399 ..     379     446 .. 0.82
   2 ?    2.9   0.0     0.082        82     237     277 ..     487     528 ..     476     542 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.007
      AAA_21   3 vliGpNgsGKSnLLdaldll 22 
                 +++G  gsGK+++ ++l  l
  KIR60904.1 380 AVVGETGSGKTTFAKLLTRL 399
                 68***************988 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.082
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHP....kllrr 277
                 lS G ++l al+ a+ +++   +ll++DE  +  +P    +l+r+
  KIR60904.1 487 LSVGERQLVALARAYVADP---DLLVLDEATSAVDPatevRLQRT 528
                 699*****99999999999...9******9999999555555554 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00035      0.35      19      43 ..     376     400 ..     365     407 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00035
                 TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakal 43 
                 ++ ++  G+ G+GKTt+++ l + +
  KIR60904.1 376 KSRVAVVGETGSGKTTFAKLLTRLM 400
                 556999*************998866 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.4    0.0011       1.1      11      33 ..     373     395 ..     367     540 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
                 HHTTCEEEEEESTTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  11 ilgggdvlvaaeTGsGKTlafli 33 
                 i  +  v v +eTGsGKT+ + +
  KIR60904.1 373 IAAKSRVAVVGETGSGKTTFAKL 395
                 45677899**********97644 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.5   1.4e+03      96     146 ..     101     152 ..      67     153 .. 0.53
   2 ?   10.1   2.3   0.00044      0.44      30     156 ..     373     518 ..     356     534 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.5
      AAA_25  96 alrddarllvldlagveslpLf.akdrggtl...ltadvdaleaaieevegvrlv 146
                 al+  ++ ++ ++++    +L  +++r+g+l   +t+dvd++ + ++   gv l+
  KIR60904.1 101 ALANVRTRAFRHVHDL--SMLHqQSERRGSLvsrVTSDVDQITQFLQW-GGVILI 152
                 3333333333333322..111112344555546678888888776665.555555 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00044
      AAA_25  30 lpagelallaGapgtGKttlaldlalava........tGkpwlg.pvapeqgkVlyvsaEds..edelrrRlravgeal............rddarllv 105
                 ++a++ ++++G +g+GKtt+a  l   +         +G p+++ ++a+ + +V++v  ++    +++ + +r ++ +l             + ++l+ 
  KIR60904.1 373 IAAKSRVAVVGETGSGKTTFAKLLTRLMDptdgavllSGVPLTEvRFASLRSRVVMVPQDGFlfDATVGQNVRFARPELtdaeltaaftelGLADWLAG 471
                 578999**************9888764434444455789999889999999999999999874334555555555544455567777776666666666 PP

      AAA_25 106 ldlagveslpLfakdrggtlltadvdaleaaieevegvrlvviDplsralg 156
                 l  ag  ++p+ + +   ++ ++++ al++a    ++++l+v+D  ++a++
  KIR60904.1 472 LP-AGL-DTPVGERGEALSVGERQLVALARAYV--ADPDLLVLDEATSAVD 518
                 65.454.66766644444444666666666644..4799999999888765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00045      0.45       1      22 [.     379     400 ..     379     427 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00045
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 +++ G  G+GKtt+ak L +++
  KIR60904.1 379 VAVVGETGSGKTTFAKLLTRLM 400
                 6799**************8875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.4       7.1     7e+03       3      36 ..     186     218 ..     184     218 .. 0.72
   2 ?   12.8   1.1   0.00012      0.12      25     164 ..     377     534 ..     366     542 .. 0.43

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.1
      AAA_16   3 vGReeeleqLlsalervrsgrpelvllsGesGvG 36 
                 v R+ + ++L+ a+++vr+  + l+  +Ges vG
  KIR60904.1 186 VIRQLQ-RRLAGAYGTVRQRMGTLLGTIGESVVG 218
                 556666.599999999998888777777777666 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00012
      AAA_16  25 elvllsGesGvGKsslvrellralekd.....................ggiflrgkcdqlesaipysalaqalareellrqllde..aesaeleawrek 100
                 + v ++Ge G+GK++ ++ l r +  +                     +++ + ++   +  +++  + ++ + r el  ++l++  + +  l++w + 
  KIR60904.1 377 SRVAVVGETGSGKTTFAKLLTRLMDPTdgavllsgvpltevrfaslrsRVVMVPQDGFLF--DATVGQNVRFA-RPELTDAELTAafT-ELGLADWLAG 471
                 4689***************99988888433333322222222222211111111111111..01111111111.11111111111111.1123333333 PP

      AAA_16 101 leealaavpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslql.laaLlrlles 164
                 l++ l      +g++ s   ++l +l++ +   ++p +lvlD++  a +   ++ l+ +l+++++
  KIR60904.1 472 LPAGLDTPVGERGEALSVGERQLVALARAYV--ADPDLLVLDEATSAVDPATEVrLQRTLDAVTR 534
                 3333332222233333333333333332222..33457777777655444444446666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 3813.51
//
Query:       KIR60905.1  [L=199]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-36  124.8   4.2    1.5e-36  124.8   4.2    1.8  2  TetR_C_16  Tetracyclin repressor-like, C-terminal domain
    1.4e-17   63.2   2.0    2.4e-17   62.5   2.0    1.4  1  TetR_N     Bacterial regulatory proteins, tetR family
     0.0007   19.9   4.8     0.0007   19.9   4.8    2.3  2  TetR_C_11  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_C_16  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.31   1.9e+03      28      59 ..      17      48 ..       3      53 .. 0.69
   2 !  124.8   4.2   2.6e-40   1.5e-36       1     107 []      86     194 ..      86     194 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.31
                HH--------HHHHHHHHHHHHHHCTTTS-ST CS
   TetR_C_16 28 rsalsseeaaellrefleeqvlaplaarlggp 59
                r a+ + + a+ +++ + ++ ++++aa+ g +
  KIR60905.1 17 REAILDAARAAFAERGFDAASIRSIAAAAGVD 48
                56666666777777777777777777776665 PP

  == domain 2  score: 124.8 bits;  conditional E-value: 2.6e-40
                 TTHHHHHHHHHHHHHHHHT-HHHHHHHHH--------HHHHHHHHHHHHHHCTTTS-ST..THHHHHHHHHHHHHHHHHHHHTS--TTCCCS-HHHHHH CS
   TetR_C_16   1 eelGerlvravlevwepearepllallrsalsseeaaellrefleeqvlaplaarlggp..daelRaalvasqllGlalaRyvlrleplasasreelva 97 
                 +++Gerlvr++l+vw+++a+++ +allrsa+s+e +a+llrefl +qvl+++ ++l+ +  +  lR +lvasql+Glal+Ryv+rlep+asa++e+lva
  KIR60905.1  86 DGVGERLVRTFLGVWDSPAGAAAVALLRSAVSNEWTARLLREFLVTQVLRRVLHHLDVDpaELPLRGSLVASQLVGLALMRYVVRLEPVASAPPETLVA 184
                 789*******************************************************9666678********************************** PP

                 HHHHHHHHHH CS
   TetR_C_16  98 lvgptlqryL 107
                  vgpt+qryL
  KIR60905.1 185 AVGPTVQRYL 194
                 *********8 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   2.0     4e-21   2.4e-17       1      47 []      20      66 ..      20      66 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 4e-21
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                IldaAr+ faerG+da+++r IA++AGv ++++++yF++K++L++a+
  KIR60905.1 20 ILDAARAAFAERGFDAASIRSIAAAAGVDPALVHHYFGGKDQLFLAA 66
                9*******************************************996 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.5     0.047   2.8e+02      14      45 ..      20      52 ..      15      82 .. 0.68
   2 !   19.9   4.8   1.2e-07    0.0007      13     113 .]      91     186 ..      81     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.047
   TetR_C_11 14 llralaealas.pragallrallaeaqrdpela 45
                +l+a+++a+a+    +a +r+++a+a  dp+l 
  KIR60905.1 20 ILDAARAAFAErGFDAASIRSIAAAAGVDPALV 52
                444444444442335666788888888888764 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 1.2e-07
   TetR_C_11  13 allralaealaspragallrallaeaqrdpelaealrerlleprraalravlrrAvarGelradadvelvldlllgpllyrllltgeplddafaerlvd 111
                 +l+r++   ++sp aga+  all  a +++ +a+ lre l+++  +++ + l+  v+  el+      lv++ l+g+ l+r +++ ep+  a  e+lv+
  KIR60905.1  91 RLVRTFLGVWDSP-AGAAAVALLRSAVSNEWTARLLREFLVTQVLRRVLHHLD--VDPAELPL--RGSLVASQLVGLALMRYVVRLEPVASAPPETLVA 184
                 68999999999*7.8888888888888***********889999999999997..89999997..89*******************************9 PP

   TetR_C_11 112 av 113
                 av
  KIR60905.1 185 AV 186
                 87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1398.78
//
Query:       KIR60906.1  [L=251]
Description: antibiotic ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-34  119.6  11.5    1.8e-34  119.0  11.5    1.2  1  ABC2_membrane    ABC-2 type transporter
    1.2e-20   73.9   8.8    1.2e-20   73.9   8.8    1.7  2  ABC2_membrane_3  ABC-2 family transporter protein
      7e-10   38.7  20.9    4.9e-09   35.9  20.9    1.9  1  ABC2_membrane_2  ABC-2 family transporter protein
    8.2e-08   32.4   7.5    1.6e-07   31.4   7.5    1.5  1  ABC2_membrane_4  ABC-2 family transporter protein
  ------ inclusion threshold ------
       0.29   11.6   0.2        2.8    8.4   0.0    2.4  3  COX6A            Cytochrome c oxidase subunit VIa


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0  11.5   4.9e-38   1.8e-34       8     207 ..      10     213 ..       4     214 .. 0.89

  Alignments for each domain:
  == domain 1  score: 119.0 bits;  conditional E-value: 4.9e-38
  ABC2_membrane   8 kreflqrwrdpslgllwrliqplllalvfgtvfgnlg...nsedglnr.pgllffsvlflafsaltsvapvferergvlerelvsplyslsayvla 99 
                       +l+++r    ++++ ++ p ll++++ +++ +++    + + ++r + ++ + + f+ ++++ts+a+++er+ g+ler+l++pl  + + +++
     KIR60906.1  10 TGRVLRQLRHDRRTVALLVLVPALLLTLVYYMYADQPtppGQPSMFDRvALVMLGVFPFVIMFLVTSIAMLRERTSGTLERLLTTPL-GRLDLLFG 104
                    444555555555777999999999999999999998855555555544677777888888889************************.******** PP

  ABC2_membrane 100 kvlvelpvsllqalifllivyflvgldls.rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwlqwiay 194
                    + +++ + ++ qa+i ++++y+++gl+   + +l++l++++ a+++++lgl+ sa+a+++ +a+q++++v++p lll+G f+ +d m +wlq+++ 
     KIR60906.1 105 YGIAFGLAAAGQAAIASAVAYWVFGLTTAgSSALVILIAVVNAVLGVALGLFCSAFARTEFQAVQFMPVVVIPQLLLCGLFVARDEMAGWLQAVSD 200
                    ****************************8555*******************************************************88******* PP

  ABC2_membrane 195 lnPltyavealrs 207
                    ++Pl+yaveal+ 
     KIR60906.1 201 ALPLSYAVEALQE 213
                    **********975 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1     0.079   2.8e+02       2      26 ..      22      46 ..      21      54 .. 0.69
   2 !   73.9   8.8   3.3e-24   1.2e-20     159     344 ..      55     243 ..      43     244 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.079
  ABC2_membrane_3  2 sfliitlllPiilvlllglifsnsv 26
                     +++ + +l+P +l++l+++++  + 
       KIR60906.1 22 RTVALLVLVPALLLTLVYYMYADQP 46
                     5677788999999999999855444 PP

  == domain 2  score: 73.9 bits;  conditional E-value: 3.3e-24
  ABC2_membrane_3 159 vasflvgliliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilll...afglgipfg.nlglllllfllf 248
                      + + +++++ ++++ i++++++ ++++E++s+++e++l++++ +l ++++  ++ +l+++ q++++ ++   +fg  ++   ++ l++l  ++ 
       KIR60906.1  55 FDRVALVMLGVFPFVIMFLVTSIAMLRERTSGTLERLLTTPLGRLDLLFGYGIAFGLAAAGQAAIASAVaywVFG--LTTAgSSALVILIAVVN 146
                      556677899999999999999999******************************************9955689**..99994556677888888 PP

  ABC2_membrane_3 249 glayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffapglgllrlitgd.plweillsliilalfavvyll 341
                      + + +alg+++s++ +++  a +++++v ++ ++++g+++  + ++++l+ ++  +P+++  ++l  ++  + p ++++++l++ a+ +v+ l+
       KIR60906.1 147 AVLGVALGLFCSAFARTEFQAVQFMPVVVIPQLLLCGLFVARDEMAGWLQAVSDALPLSYAVEALQEVGAHAePTATMWRDLGVVAGAVVLALA 240
                      ******************************888888888889**************************85555999****************** PP

  ABC2_membrane_3 342 lal 344
                      la+
       KIR60906.1 241 LAA 243
                      *97 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9  20.9   1.4e-12   4.9e-09      68     285 ..      51     248 ..      13     250 .. 0.75

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.4e-12
  ABC2_membrane_2  68 edtdqdlkvvstimavlipviaalfgadaiagEkergTlkllLskPvsRdeillgKfigglaiglaiavallatvllalaiilalgivlaledl 161
                      +  + d  +++++  + ++++ +++++ +  +E+++gTl++lL++P  R ++l+g  i+  ++      a++ + +++ +   ++g  +a+++ 
       KIR60906.1  51 QPSMFDRVALVMLGVFPFVIMFLVTSIAM-LRERTSGTLERLLTTPLGRLDLLFGYGIAFGLA------AAGQAAIASAVAYWVFGLTTAGSSA 137
                      22333333345666666666677777766.59***********************98888887......4444445567777889********* PP

  ABC2_membrane_2 162 lllvvasvlllllvvflalglllSsvarssreaaalalglfvvlailvpivlygvaellagpavpqeindflsllsptsayntllneilagsdl 255
                      l++++a+v  +l    +algl+ S++ar+  +a + + ++++  ++l ++++++        ++ + + + +s   p s+   +l+e+ a ++ 
       KIR60906.1 138 LVILIAVVNAVL---GVALGLFCSAFARTEFQAVQFMPVVVIPQLLLCGLFVAR-------DEM-AGWLQAVSDALPLSYAVEALQEVGAHAEP 220
                      ********8877...69***********************************66.......455.67888999999************999963 PP

  ABC2_membrane_2 256 nalgstatnllilllllavllvlgyvlFkr 285
                         +  +  l+++ +  +  l+l++  ++r
       KIR60906.1 221 --TATMWRDLGVVAGAVVLALALAAATLRR 248
                      ..4677777787777777778877766666 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   7.5   4.5e-11   1.6e-07      15     170 ..      24     174 ..      18     186 .. 0.64

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 4.5e-11
  ABC2_membrane_4  15 vwllvlaallvpllallyfnllgktgldpaefyslsvfgftlllllplilgi.iasylifrEeqndtlknLltiPvsrtklllaKlivllllsv 107
                      v llvl+++l+  l+l+y +++++++  p +  +++ + + +l ++p+++   ++s+ + rE++++tl  Llt P  r  ll++  i+  l ++
       KIR60906.1  24 VALLVLVPALL--LTLVYYMYADQPT-PPGQPSMFDRVALVMLGVFPFVIMFlVTSIAMLRERTSGTLERLLTTPLGRLDLLFGYGIAFGLAAA 114
                      33444444433..4455555655554.6778888888888889899998887478999*************************96666555444 PP

  ABC2_membrane_4 108 llmlvtflitvlfallsgfvgfsvklvlellkkclelgllvff.avlpiialvllkksyvlpli 170
                            +++++++ +++g +   ++++++l+  ++  +l+v++ +++ ++a + ++  +++p++
       KIR60906.1 115 GQA---AIASAVAYWVFGLTTAGSSALVILIA-VVNAVLGVALgLFCSAFARTEFQAVQFMPVV 174
                      333...35667777888887766665554444.3333333333133444555556665555555 PP

>> COX6A  Cytochrome c oxidase subunit VIa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.39   1.4e+03      41      60 ..      21      40 ..      15      45 .. 0.81
   2 ?   -2.3   0.0       1.7   6.2e+03      47      64 ..     173     190 ..     167     197 .. 0.79
   3 ?    8.4   0.0   0.00078       2.8      26      58 ..     210     242 ..     201     249 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.39
       COX6A 41 wrklslyvaipalilaaina 60
                 r ++l+v +pal+l+ ++ 
  KIR60906.1 21 RRTVALLVLVPALLLTLVYY 40
                578999********997764 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
       COX6A  47 yvaipalilaainaynle 64 
                 +v+ip l+l ++ +++ e
  KIR60906.1 173 VVVIPQLLLCGLFVARDE 190
                 689999999999887655 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00078
       COX6A  26 ereavkeHaeettdlwrklslyvaipalilaai 58 
                 + ++v +Hae t+ +wr l +++   +l+la +
  KIR60906.1 210 ALQEVGAHAEPTATMWRDLGVVAGAVVLALALA 242
                 5678999************97766555555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1001  (0.0558313); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 1643.94
//
Query:       KIR60907.1  [L=517]
Description: anthranilate synthase component I [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-98  326.9   0.0    1.1e-97  326.6   0.0    1.1  1  Chorismate_bind  chorismate binding enzyme
    1.3e-30  106.5   0.0    8.7e-29  100.6   0.0    2.3  2  Anth_synt_I_N    Anthranilate synthase component I, N termina


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.6   0.0  1.3e-101   1.1e-97       4     258 .]     243     499 ..     240     499 .. 0.99

  Alignments for each domain:
  == domain 1  score: 326.6 bits;  conditional E-value: 1.3e-101
                      HHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETT....SEEEEECEEEEEE CS
  Chorismate_bind   4 dYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleledsellgaSPElllkvegg....rrietepiaGTra 93 
                       Y +ave++ke+irag+++++vl++r++ +  ++ dpl++yr lr++np+py++ll++++++++g+SPE  lkv++g    rr+  +piaGTr+
       KIR60907.1 243 GYPKAVEAAKEAIRAGECFQIVLAQRFERP--TDADPLDVYRVLRTTNPSPYMYLLRFDGFDVVGSSPEAHLKVNAGpdgrRRALLHPIAGTRP 334
                      699***************************..888***************************************98899999************ PP

                      HSSSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEESH CS
  Chorismate_bind  94 rgktpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPk 187
                      rg+tp +d++l++ell+d+Ker+Eh+m+vdl rndLg+v++pg+v+vpe+ ++erys+v+h+vst+ gel+++ +++d+l+a+fP+g+++GaPk
       KIR60907.1 335 RGETPDADARLAAELLADPKERSEHVMLVDLGRNDLGRVCRPGTVQVPEFATIERYSHVMHIVSTVVGELRPEQTAFDALAATFPAGTLSGAPK 428
                      ********************************************************************************************** PP

                      HHHHHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 188 krameiidelEearRgvYaGavgyldadgeaelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                       rameii+elE+ rRg+Y+G+vgy+++ g++++a++IRta+++d++++++aGaG+vadSdp+aE +Et++K
       KIR60907.1 429 VRAMEIIEELEPVRRGLYGGTVGYFGFGGDLDMAIAIRTALIRDGRAYVQAGAGVVADSDPAAEDQETRDK 499
                      ********************************************************************998 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0   9.7e-33   8.7e-29       1     139 [.      32     177 ..      32     180 .. 0.92
   2 !    3.6   0.0    0.0076        68      84     100 ..     428     455 ..     373     466 .. 0.65

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 9.7e-33
  Anth_synt_I_N   1 ddltplsvylklaeeehkflLeSaenegge.....grySfigldpflelkskngeveveg.pegeeleeeepldalrellerfrsaedse.ptelp 89 
                    d +tp+ vy+kla+ + +flLeSae+  g+     +rySfig++ +++l+ ++g + ++g p  +  + ++p+ +lre++e +    +   ++ +p
     KIR60907.1  32 DAETPVGVYRKLAGGPGTFLLESAEQGAGSagmawSRYSFIGVRSSATLTERDGVAGWTGqPPAGLPSGGDPVRVLRETVEALAGPAWDPaSGMPP 127
                    679**********************8888899999*************************66666667777***********99777666789999 PP

  Anth_synt_I_N  90 fvgGlvGylgYDlvreieklpksakddlnlpdarlilydtlivfDhkerr 139
                    ++gG+vGylgYDlvr +e+lp+ ++ddl lp++ ++l  +l+v Dh+ + 
     KIR60907.1 128 LTGGMVGYLGYDLVRRFERLPELTEDDLGLPELGMMLATDLVVLDHYDGS 177
                    **********************************************9865 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0076
  Anth_synt_I_N  84 e...........ptelpfvgGlvGylgY 100
                    +           p    ++gG vGy+g+
     KIR60907.1 428 KvrameiieelePVRRGLYGGTVGYFGF 455
                    2445555443223333499*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3781.41
//
Query:       KIR60908.1  [L=202]
Description: Trp biosynthesis associated, transmembrane protein, Oprn/Chp [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-31  110.0  31.5      1e-30  106.9  31.5    1.9  1  Trp_oprn_chp     Tryptophan-associated transmembrane protein 
  ------ inclusion threshold ------
      0.059   13.4   1.8       0.15   12.1   1.8    1.6  1  Phage_holin_2_1  Bacteriophage P21 holin S
        4.2    7.4   6.7         11    6.0   0.1    2.3  2  DUF1304          Protein of unknown function (DUF1304)


Domain annotation for each model (and alignments):
>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9  31.5   1.7e-34     1e-30       1     180 []      28     200 ..      28     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 1.7e-34
  Trp_oprn_chp   1 llllalgAallllasrltWvtvtvsdalg.gprtvalsGadwapaltalAlvllAaavAvlavrglgrrvvgvllalagagaavaalslltdpadaa 96 
                   +ll+++gA+l+l+as++tW+   +++ +  +p++ a +Ga + p+l alA+v+lA+  Avla+rgl rr+vgvll+++ga++av +  +l+++ d  
    KIR60908.1  28 VLLCLAGAGLALWASTRTWAVELAARPAPlPPVRAARTGAGLLPWLPALAVVGLAGGGAVLATRGLPRRLVGVLLLALGAAVAVGGGYGLVAAFDGT 124
                   69*****************877777666669*******************************************************99999866644 PP

  Trp_oprn_chp  97 raaaaaatgvasaaaaveltawpvlalaggvllllagvllllrarswpamssrYerpaarraeaeae.........dserdlWdaLdrGeDPT 180
                    +++                 wp++ l+gg+l++l+g l++lr++ wpam++rYerp++r a  + +          +  ++WdaLdrGeDPT
    KIR60908.1 125 VSRQ-----------------WPAFCLVGGLLAALGGGLVALRGAGWPAMGARYERPGRRGAGPAPAeaaagpvtgRRTTEAWDALDRGEDPT 200
                   4444.................*************************************98775544478999****9***************9 PP

>> Phage_holin_2_1  Bacteriophage P21 holin S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.8   2.4e-05      0.15      10      46 ..     106     143 ..     101     149 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.4e-05
  Phage_holin_2_1  10 gaSgg.sigywlkqlldklspeeWsaigvlgglvigll 46 
                      ga+ +  +gy+l    d+  + +W a+ ++ggl+ +l 
       KIR60908.1 106 GAAVAvGGGYGLVAAFDGTVSRQWPAFCLVGGLLAALG 143
                      44433035699**********************99875 PP

>> DUF1304  Protein of unknown function (DUF1304)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1    0.0019        11      63      97 ..      16      50 ..      10      62 .. 0.79
   2 ?    3.0   2.8     0.017     1e+02      52      90 ..     109     148 ..      98     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0019
     DUF1304 63 gseavglalvlfflgcvvvaglygaltaskkillv 97
                +++++ ++l+ ++l+c + agl+++++ ++ ++ +
  KIR60908.1 16 PAARARRELTYAVLLCLAGAGLALWASTRTWAVEL 50
                55678899******************998765544 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.017
     DUF1304  52 LAagliwgl.llgseavglalvlfflgcvvvaglygalta 90 
                 +A+g  +gl ++ + +v++++ +f+l+  ++a+l g+l a
  KIR60908.1 109 VAVGGGYGLvAAFDGTVSRQWPAFCLVGGLLAALGGGLVA 148
                 5778888995559999****************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1608.96
//
Query:       KIR60909.1  [L=85]
Description: hypothetical protein TK50_24135 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 707.17
//
Query:       KIR60910.1  [L=287]
Description: indole-3-glycerol phosphate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-80  268.8   0.0    4.1e-80  268.6   0.0    1.0  1  IGPS          Indole-3-glycerol phosphate synthase
    3.2e-07   29.7   1.3    7.3e-05   21.9   0.4    2.2  2  FMN_dh        FMN-dependent dehydrogenase
     0.0002   20.6   0.5     0.0034   16.6   0.2    2.6  2  NanE          Putative N-acetylmannosamine-6-phosphate epimer
  ------ inclusion threshold ------
      0.032   14.0   0.1      0.062   13.1   0.0    1.5  1  QRPTase_C     Quinolinate phosphoribosyl transferase, C-termi
      0.035   13.7   0.1       0.04   13.5   0.1    1.2  1  OMPdecase     Orotidine 5'-phosphate decarboxylase / HUMPS fa
       0.13   11.7   0.9        2.3    7.6   0.1    2.6  3  His_biosynth  Histidine biosynthesis protein
       0.15   11.0   1.2       0.84    8.6   0.0    2.2  3  IMPDH         IMP dehydrogenase / GMP reductase domain


Domain annotation for each model (and alignments):
>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.6   0.0   1.6e-83   4.1e-80       1     254 []      22     273 ..      22     273 .. 0.99

  Alignments for each domain:
  == domain 1  score: 268.6 bits;  conditional E-value: 1.6e-83
                 HHHCHHHHHHHHHHHHCCS-GGCCCCG..-SS-SS-HHHHCHCHTTS-EEEEEE-SEETTTEESBSS--HHHHHHHHTTT.-SEEEEE--CCCC---CC CS
        IGPS   1 lekivaekkeevaeakkrqsladleaavklakpkrsfaeaLresekklaliaEvKkaSPskgliredfdpaeiAkkyeeagAsaiSVLteekyFqGsle 99 
                 l++i+a  +e+va+++++++l+ +++ + +a+p  + + aLr+    +a+iaEvK+ SPskg+i+e +dpa +A +y+++gA +iSVLte ++F Gsl+
  KIR60910.1  22 LDEILAGVREDVARRQEQVPLERIRELAAAAPPPLDAYAALRR--PGVAVIAEVKRSSPSKGQIAEIADPAVLAADYAAGGARVISVLTEGRWFGGSLD 118
                 789***************************************9..9***************************************************** PP

                 HHHHHHHH-SS-EEEES---SHHHHHHHHHCT-SEEEEECCCS-HHHHHHHHHHHCCTT-EEEEEESSHHHHHHHHHTT-SEEEEESEETTTTEE-CHH CS
        IGPS 100 dLrevrqavslpvlrKdFiideyqieearalgadaiLLivkvledeeleelaeaakslglevLvEvhdeeeleralklgakiiGvNnRnLktlevdlnt 198
                 dL++vr+av++pvlrKdF++++yq++eara+gad++LLiv++le++ l  l e  +slg+ +LvEvh+eee +ra+++ga++iGvN R+L+tlevd   
  KIR60910.1 119 DLAAVRAAVKVPVLRKDFVVSSYQVHEARAHGADLVLLIVAALEQNALVGLLERIESLGMCALVEVHTEEEADRAMEAGAQVIGVNARDLRTLEVDRSV 217
                 *************************************************************************************************** PP

                 HHHHCHCC-TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC-TTHHHHHHHH CS
        IGPS 199 teeLaklvpkdvllvaeSGiktredveklkeegvnafLvGeslmrqedvekairel 254
                 +e++a+ +p++v+ +aeSG++ ++d+ +++++g++a+LvGe l+ q++ ++a+++l
  KIR60910.1 218 FERIAPGLPSNVVKIAESGVRGPHDLIRYASAGADAVLVGEGLVTQSSPREAVAAL 273
                 *************************************************9999876 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0012       3.1     149     242 ..      27     155 ..      12     160 .. 0.62
   2 !   21.9   0.4   2.9e-08   7.3e-05     223     304 ..     183     261 ..     162     270 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0012
                 ---BHHHHHCT--BSTT-T.G.TTGGGSTSGSCCTTH..................................THHHHHHCCCHB-TC-...-HHHHHHHH CS
      FMN_dh 149 lgkRerdlrngfslppklklrnllqelakpewaaeal................................kkasaaaefvgkqldpsl...twddikwlr 212
                 +g Re+  r + ++p + ++r+l++++  p  a +al                                + a++ a++++   + ++   + dd++ +r
  KIR60910.1  27 AGVREDVARRQEQVPLE-RIRELAAAAPPPLDAYAALrrpgvaviaevkrsspskgqiaeiadpavlaaDYAAGGARVISVLTEGRWfggSLDDLAAVR 124
                 55555555555555555.444444444444444444455555555555555555555555555555543223333355555555555666889999999 PP

                 HHHSSEEEEEE.E-SHHHHHHHHHTTESEEE CS
      FMN_dh 213 eqtklplvvKG.vltaedakraveaGvdgiv 242
                 +++k+p++ K  v++   +++a ++G+d ++
  KIR60910.1 125 AAVKVPVLRKDfVVSSYQVHEARAHGADLVL 155
                 9999999999856999999999999999876 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 2.9e-08
                 EE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHH CS
      FMN_dh 223 GvltaedakraveaGvdgivvSNHGGRqldgapatidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpfl 304
                 +v t+e+a+ra+eaG++ i v    +R l++     +v  +i+  +++++  ++ +G+r   D ++    GAdavl+G  ++
  KIR60910.1 183 EVHTEEEADRAMEAGAQVIGVN---ARDLRTLEVDRSVFERIAPGLPSNVVKIAESGVRGPHDLIRYASAGADAVLVGEGLV 261
                 6899***************995...6888888888889999******999999*************************8765 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.12   3.1e+02     138     160 ..      60      82 ..      48      93 .. 0.80
   2 !   16.6   0.2   1.3e-06    0.0034      22     176 ..     118     260 ..     113     276 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.12
                 HHHHHTT--EEEES---SHHHHH CS
        NanE 138 kalseaglkviaeGrintPekak 160
                  al   g++viae +  +P k +
  KIR60910.1  60 AALRRPGVAVIAEVKRSSPSKGQ 82 
                 568888999**********9876 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.3e-06
                 HHHHHHHTT--S-EEEE-B---TTS---BS-SHHHHHHHHTTT-SEEEEE--SS--T--HHHHHHHHHHH--EEEEE-SSHHHHHHHHHTT-SEEE-TT CS
        NanE  22 edikaikavvdlPiiGivkrdlpdsevritatlkdideLaaagadiialDatdrerpvtieelikkikekyqllmaDistleeglvakklGvdivGttl 120
                 +d++a++a+v++P+   +++d+  s         ++ e  a+gad++ l  +  e++  +  l+++i+  +++++ ++ t ee+  a ++G++++G   
  KIR60910.1 118 DDLAAVRAAVKVPV---LRKDFVVSSY-------QVHEARAHGADLVLLIVAALEQNA-LVGLLERIESLGMCALVEVHTEEEADRAMEAGAQVIGVNA 205
                 56666666666664...3555433332.......466666777777776666655554.45689********************************987 PP

                 TTSSTTS-.SS--HHHHHHHHHTT--EEEES---SHHHHHHHHTT--SEEEE-HHH CS
        NanE 121 sGytkeeekaepDfalvkalseaglkviaeGrintPekakkaieiGvdavvvGsai 176
                     + e  +   f+ +   + +++  iae  +  P+   +    G+dav vG  +
  KIR60910.1 206 RDLRTLE-VDRSVFERIAPGLPSNVVKIAESGVRGPHDLIRYASAGADAVLVGEGL 260
                 7654443.4556677777778899999**************************866 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.4e-05     0.062      83     155 ..     180     257 ..     156     268 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.4e-05
                 EEEEESSHHHHHHHHHHT-SEEEEES--HHHHHHHHHHHHHHSTT.....SEEEEESS--TTTHHHHHCTT-SEEEEC CS
   QRPTase_C  83 ievevesleeleevleaeadiimLDnfsveelkkaveelkeknkr.....vlievSGgvtlenveeyaksgvdvisvg 155
                   vev+++ee+++++ea+a++i +   +  +l+    + +++++      v+i  SG     ++  ya+ g d++ vg
  KIR60910.1 180 ALVEVHTEEEADRAMEAGAQVIGVNARDLRTLEVDRSVFERIAPGlpsnvVKIAESGVRGPHDLIRYASAGADAVLVG 257
                 47********************99988876665444444555555556789999999999999999999999988776 PP

>> OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.5e-05      0.04     113     223 ..     164     271 ..      58     273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.5e-05
                 S.EEEEEESTSSGGHHHHHHHSHHHHHHHHHHHHHHHTTESEEECCCHTHHHHHHTTCSCEEEHHHTTEEEEECTTCCGGGHHHHHH..HTTCSEEEES CS
   OMPdecase 113 nrgllilaqmsskgnlmlqekgytqacveaarehkaedfvmGfvaqetlnateedaddfihltpgigleqggdgkgqqyntpeklig..iagadiiivG 209
                 n+ + +l+++ s g  +l e   t++ +++a e+   ++v+G+ a   +  +e d + f  + pg       +  +   + p++li+   agad + vG
  KIR60910.1 164 NALVGLLERIESLGMCALVE-VHTEEEADRAMEAG--AQVIGVNARDLRT-LEVDRSVFERIAPGLPS-NVVKIAESGVRGPHDLIRyaSAGADAVLVG 257
                 45777888888888888888.7899999******9..88*****999988.7788889********98.55555555566788887622589******* PP

                 HHHHTSSSHHHHHH CS
   OMPdecase 210 RgIlkagdpveeae 223
                  g+++++ p+e++ 
  KIR60910.1 258 EGLVTQSSPREAVA 271
                 **********9986 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.061   1.6e+02      27      50 ..      85     108 ..      68     206 .. 0.60
   2 ?   -0.5   0.0      0.27   6.8e+02      82     115 ..     184     217 ..     143     224 .. 0.76
   3 ?    7.6   0.1   0.00091       2.3     192     224 ..     229     261 ..     210     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.061
                   ETTSHHHHHHHHHHHT-SEEEEEE CS
  His_biosynth  27 yagdpvelakryeeegadelhvvD 50 
                   +  dp+ la +y++ ga+ + v+ 
    KIR60910.1  85 EIADPAVLAADYAAGGARVISVLT 108
                   556777777777777777776653 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.27
                   SSSHHHHHHHHHCT-SEEEESHHHHH-THHHHHH CS
  His_biosynth  82 Irsledveelleagadkviigtaavknpelikel 115
                   + + e++++++eaga+ + ++   ++  e+ +++
    KIR60910.1 184 VHTEEEADRAMEAGAQVIGVNARDLRTLEVDRSV 217
                   5567788888888888888887777766665555 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00091
                   SEEEEESS--SHHHHHHHHHTTCSEEEESHHHH CS
  His_biosynth 192 ipviasGGvgsledlkelksegvdavivgsaly 224
                   +  ia  Gv+ + dl + +s+g+dav+vg+ l 
    KIR60910.1 229 VVKIAESGVRGPHDLIRYASAGADAVLVGEGLV 261
                   55689999******************9998665 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.17   4.4e+02     199     235 ..     120     156 ..     110     162 .. 0.86
   2 ?    0.3   0.2      0.11   2.8e+02     110     170 ..     144     201 ..     121     205 .. 0.57
   3 ?    8.6   0.0   0.00033      0.84     207     247 ..     228     267 ..     215     277 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.17
                 HHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 199 vaeaakkagvpviaDGGikysgdivkAlaaGadavml 235
                  a++ +  +vpv+    + +s+++  A a Gad v+l
  KIR60910.1 120 LAAVRAAVKVPVLRKDFVVSSYQVHEARAHGADLVLL 156
                 56677788899999999999*************9986 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.11
                 HHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 110 kalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadav 170
                 ++  ++g+d++++ +a  +++  +  +++i +    + ++  +v t+e a + +eaga+++
  KIR60910.1 144 HEARAHGADLVLLIVAALEQNALVGLLERIESLG-MCALV--EVHTEEEADRAMEAGAQVI 201
                 3444455555555555555555555555555433.33333..5666666666666666665 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00033
                 T-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 207 gvpviaDGGikysgdivkAlaaGadavmlGsllagteEspg 247
                 +v  ia  G++  +d+++  +aGadav++G+ l  t+ sp 
  KIR60910.1 228 NVVKIAESGVRGPHDLIRYASAGADAVLVGEGLV-TQSSPR 267
                 67789*************************9885.445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2021.00
//
Query:       KIR60911.1  [L=411]
Description: tryptophan synthase subunit beta [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-44  152.3   5.6    2.3e-44  152.0   5.6    1.1  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.0   5.6   1.3e-48   2.3e-44       5     293 ..      64     390 ..      60     391 .. 0.81

  Alignments for each domain:
  == domain 1  score: 152.0 bits;  conditional E-value: 1.3e-48
                 SSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHH.HHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-...HHHHHHHHH CS
        PALP   5 igpTPlvrlprlskelgvplflKlEslnptgSfKdRgae.yllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadas...pekvallrl 99 
                  +p+ l +++r+s+++g++++lK+E+ln+tg++K+R +   +l++ + g ++++++e+++G+hg+a+A aaal+ l++++++ + ++   + +va++r+
  KIR60911.1  64 GTPSLLYPAHRFSAKIGARVLLKREDLNHTGAHKVRNVLgQALLTKRMG-KRRVIAETGAGQHGVATATAAALFDLECVVYMGEVDTqrqALNVARMRM 161
                 56677899******************************97777778888.*******************************9999995556******** PP

                 TT-EEEEECCHHHHHHHHHHHHHHH.....STTCEE--TTTSHH.....HHHHHHTHHHHHH....HHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT CS
        PALP 100 lGaevvevggdydeavaaaaelaae.....gegaylvsqfdnpt.....viegygtiglEil....eqlggkpdavvvpvGgGgliaGiaaglkerrpd 184
                 lGa+vv v ++  + ++a++e+ ++     +e  yl+ +   p+     v +    ig E      e +g  pdav ++vGgG+++ Gi +++  + + 
  KIR60911.1 162 LGATVVPVTTGSRTLKDAMNEAMRDwvanvDETHYLIGTAAGPHpfpelVRDFVRGIGVEARaqclEATGALPDAVAACVGGGSNALGIFHAFVPDEG- 259
                 ********77777777777777777666786666666666634344664666699999999655569999************************9766. PP

                 -EEEEEEEC....TTCGGTTCCS..S.SS..B......................SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHH CS
        PALP 185 vrvigvepe....gsdalarslragrrvtvpvs.....................dtiadglavgspselafelldrlvdeivtvsdeealeamrllarr 258
                 vr++g e+       d  a+s+  g       s                     ++i  gl+ + +++++  l+d     +  v+d+ea++a +ll+r+
  KIR60911.1 260 VRLYGFEAGgegvDTDRHAASITGGT------SgvlhgartyvlqdadgqtvesHSISAGLDYPGVGPEHAWLHDSGRANYLPVTDAEAMAAFELLCRT 352
                 8*****98765223333333442222......1344446888888899999999**********99999999*************************** PP

                 HSB-B-HHHHHHHHHH...HHHHHHCCTTCEEEEEEE- CS
        PALP 259 egivvepssaaalaal...klreagelkegdrvvvilt 293
                 egi++   sa+ala++       a+el+++ +++v l+
  KIR60911.1 353 EGIIPAIESAHALAGAqkiAPGLAAELGREPVILVNLS 390
                 ****************5444445555555555566555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3016.28
//
Query:       KIR60912.1  [L=267]
Description: tryptophan synthase subunit alpha [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-69  231.5   0.1    7.8e-69  231.4   0.1    1.0  1  Trp_syntA      Tryptophan synthase alpha chain
     0.0025   17.7   0.7       0.25   11.1   0.1    2.4  2  KDGP_aldolase  KDGP aldolase


Domain annotation for each model (and alignments):
>> Trp_syntA  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.4   0.1   8.7e-73   7.8e-69       1     243 [.       8     247 ..       8     263 .. 0.95

  Alignments for each domain:
  == domain 1  score: 231.4 bits;  conditional E-value: 8.7e-73
                 HHHHHCTTB-EEEEEEETTSS-HHHHHHHHHHHHHCT-SSEEEE---S--TTS-HHHHHHHHCCCCTT--HHHHHHHHHHHHHHCSSS-EEEEE-CHHH CS
   Trp_syntA   1 faklkaenraafvpyvtagdpdleqsleilkalekagadviElGlpfsdPladGPvIqaanlraLakgvtlekvlelveevrkkevevPivlltylnlv 99 
                 f k++a++ra++v  + ag+p++e s+ +++a+ +ag+dviE+ +p+sdP++dGPvIq+a+ +aLa gv+++++l ++e+v    + +P+v +ty n++
  KIR60912.1   8 FDKARADGRAVLVGCMPAGFPTVEGSIAAMTAMVDAGVDVIEVEIPYSDPVMDGPVIQKASDIALAGGVRTADTLRIIEAVA--ATGAPVVTMTYWNPI 104
                 6789999**************************************************************************9..999************ PP

                 CCC-HHHHCHHHHHCTEEEEEETTSBCCCHHHHHHHHHHTT-EEEEEE-TTS-HHHHHHHHHH--S-EEEESTTC-SSTTSSB-TTHHHHHHHHHHCTS CS
   Trp_syntA 100 lsygeerflaelkeagvdglivpDlPleeaeelveaakkkglelvflvapttsderlkevveqaegfvYvvsraGvTgaenavaaevdelverlkklta 198
                  +yg ++f ++l+ ag +gli pDl ++ea+e  +a +++gl+  flv+p+++d+rl++ ve+ +gfvY+ +++GvTga++++++    lv+rl+++t+
  KIR60912.1 105 EQYGVDAFARDLAAAGGTGLITPDLIPDEADEWLAASDAHGLDRTFLVSPSSTDARLRMTVEHCRGFVYATAIMGVTGARSQTSEAAPILVSRLREVTD 203
                 *************************************************************************************************** PP

                 S-EEEESSS-SHHHHHHHHTT-SEEEE-HHHHHHHHCTTTSHHHH CS
   Trp_syntA 199 vPvavGFGistkeqvkqvakvadGvivGSalvkkieeeaeekeqa 243
                 +Pv vG G+ t +q+ +va  adGvivGSal++ + + a ++++ 
  KIR60912.1 204 LPVGVGLGVGTGAQAGTVAGYADGVIVGSALIRCLLD-APDPAAG 247
                 *********************************9884.4444444 PP

>> KDGP_aldolase  KDGP aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0     0.003        27      25      62 ..      15      52 ..       6      73 .. 0.75
   2 !   11.1   0.1   2.8e-05      0.25      27      75 ..     175     223 ..     161     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.003
                   TT-EEEEEEGGGSSSHHHHHHHHHHHHHCTTT-EEEE- CS
  KDGP_aldolase 25 eghvviGvlsknyetveeavedvkkykkevdnaisvGL 62
                      v++G + + ++tve ++ ++ +  ++  ++i v +
     KIR60912.1 15 GRAVLVGCMPAGFPTVEGSIAAMTAMVDAGVDVIEVEI 52
                   34589*****************9987666555666655 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 2.8e-05
                    -EEEEEEGGGSSSHHHHHHHHHHHHHCTTT-EEEE-STT-GGGHHHHHH CS
  KDGP_aldolase  27 hvviGvlsknyetveeavedvkkykkevdnaisvGLGaGdpeqskmvae 75 
                     +++Gv  +  +t e+a   v ++++++d ++ vGLG G  +q+ +va 
     KIR60912.1 175 TAIMGVTGARSQTSEAAPILVSRLREVTDLPVGVGLGVGTGAQAGTVAG 223
                    4699*************************************99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2094.44
//
Query:       KIR60913.1  [L=382]
Description: diacylglyceryl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-64  215.5   4.6    7.3e-64  215.3   4.6    1.0  1  LGT              Prolipoprotein diacylglyceryl transferase


Domain annotation for each model (and alignments):
>> LGT  Prolipoprotein diacylglyceryl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3   4.6   4.1e-68   7.3e-64       3     241 ..      19     274 ..      17     275 .. 0.89

  Alignments for each domain:
  == domain 1  score: 215.3 bits;  conditional E-value: 4.1e-68
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         LGT   3 afsigpleirwYgllialgfllavllakrrakkeglkeekdkvddlliyavilgiiGaRlgyvl....fY..ylsnpleilkiwegGlaihGgligvll 95 
                 ++++gpl++r Y+l+i++g+++a+++++rr++++g+      v+d++++av+ giiGaR+++v+     Y     +pl+ ++iwegGl i+G++ g++l
  KIR60913.1  19 VWQLGPLPLRAYALCIIAGIAVACVVTERRLRQRGVAPGA--VLDIAVWAVPTGIIGARIYHVItspeKYfgEGGEPLKAFAIWEGGLGIWGAVAGGAL 115
                 7899*****************************9999966..**********************999967454499*********************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxx RF
         LGT  96 alllyakkkklsflkvlDivapvvalgqaigRlGNfingelyGkptdlpwglvfkkaeelplp................rhPtqlYeslenlllflill 178
                 ++++ a++ +++f  v+D++ap+++l+qa+gR+GN++n+elyG  t+lpwgl ++++++++ p                +hPt+lYe+l+n+ +++++l
  KIR60913.1 116 GAWIAARQLGIPFAVVADALAPGLPLAQAVGRFGNWFNNELYGGLTTLPWGLRVHDMDPRN-PghakvvdgepvllpglYHPTFLYEALWNVGVAALVL 213
                 ******777******************************************8888888888.33444556666777788***********999999998 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
         LGT 179 lllskkkkkkkkdgevfglylilyglgRffiEflRtdslll.gslrmgqllsiplvlagialli 241
                 + l   ++ +  +g+ f+ly+++y +gRf+iE++Rtd+  +  +lr + ++++++++ ++++++
  KIR60913.1 214 V-LD--RRLRLGRGRAFALYVMGYTAGRFWIELMRTDEANHiLGLRLNVWTAALVFVGALVYFL 274
                 8.54..3445679**********************99744449*************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2694.01
//
Query:       KIR60914.1  [L=395]
Description: FAD-binding monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-19   70.3   4.7    7.5e-09   35.3   0.1    2.8  2  FAD_binding_3   FAD binding domain
    2.9e-07   30.0   0.7     0.0002   20.7   0.3    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    2.7e-06   27.5   2.4    4.2e-06   26.9   0.3    2.3  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    6.7e-06   26.6   0.0    1.4e-05   25.5   0.0    1.5  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    4.3e-05   23.3   9.3    0.00011   21.9   1.4    2.9  3  DAO             FAD dependent oxidoreductase
    0.00047   19.3   0.0    0.00047   19.3   0.0    1.6  2  Lycopene_cycl   Lycopene cyclase protein
    0.00081   18.5   0.0      0.032   13.3   0.0    2.1  2  SE              Squalene epoxidase
      0.001   18.2   1.1     0.0025   16.9   1.1    1.7  1  FAD_binding_2   FAD binding domain
  ------ inclusion threshold ------
      0.016   14.8   1.3      0.038   13.6   1.3    1.6  2  ApbA            Ketopantoate reductase PanE/ApbA
      0.018   14.1   0.8      0.027   13.6   0.8    1.2  1  GIDA            Glucose inhibited division protein A
      0.019   13.6   0.4       0.18   10.5   0.5    1.9  2  HI0933_like     HI0933-like protein
      0.059   12.6   1.9       0.22   10.8   0.4    2.2  2  Amino_oxidase   Flavin containing amine oxidoreductase
      0.099   12.5   0.2       0.18   11.7   0.2    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
       0.23   10.3   0.8         12    4.6   0.5    2.3  3  Trp_halogenase  Tryptophan halogenase
       0.23   10.6   0.3       0.44    9.7   0.3    1.3  1  Thi4            Thi4 family


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   1.1   1.3e-11   1.5e-08       4     175 ..       4     164 ..       2     179 .. 0.73
   2 !   35.3   0.1   6.2e-12   7.5e-09     284     348 ..     290     350 ..     281     351 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.3e-11
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCC...CEEEEEHHCHHCS CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdt...pkaradlelessp 96 
                     ++VGaG  Gl  a  L++ G +v+l+e+ ++  ++p a +l +  ++ lr l l + + a ++p    g             + +++  +     
     KIR60914.1   4 AVVVGAGIGGLAVAGALARSGWQVTLLERADRVRPDPTAVVLWPNGVRALRALDLGAGLDAIATPLPDGGVRRPDG---QwlvQPRPTPAD----- 91 
                    579*******************************************************999998877544433333...112222222222..... PP

                    T-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGG CS
  FAD_binding_3  97 ervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgie 175
                    +++ v+  ++l  +L++ + er +++r +  v++++++  + ++ v    +g++ +++a+ +v+aDG  S +r++l  e
     KIR60914.1  92 RMPVVVHREDLHDALIAGLGER-VELRTGVSVRTVRAEPGQ-RPSVG---DGRQ-RFEADLIVAADGTDSEIRRQLAPE 164
                    5566666677777777764333.555555555544444333.44444...4445.*******************99755 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 6.2e-12
                    TTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 284 grvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvdf 348
                    g v l GDAaH++pP  GqG  +a +Da +L    a+ l++++ ++   +Y++ rr++a+ vv++
     KIR60914.1 290 GGVVLLGDAAHAMPPHLGQGACLAFEDAATL----ASLLRESRLPDAVAAYDRLRRPRAATVVRQ 350
                    789************************9976....567788999******************997 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.3   1.7e-07    0.0002     145     178 ..       4      37 ..       2      44 .. 0.80
   2 !    7.5   0.0    0.0018       2.1     194     239 ..     111     155 ..      90     165 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.7e-07
                  EEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 145 ivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  +vvvG+G  G+ +A+ala+ g +vtl+e++dr+ 
   KIR60914.1   4 AVVVGAGIGGLAVAGALARSGWQVTLLERADRVR 37 
                  6888999999999999999999999999888886 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0018
                  HHTTEEEEESCEEEEEEETTEEEEEEETTSCE.EEESEEEE-S-EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
  Pyr_redox_2 194 ekeGvevklgtsvkeidgngeklevvledgee.idadlvvvavGvrp 239
                   +  ve+++g sv ++++++   +   +dg++ ++adl+v a G   
   KIR60914.1 111 GE-RVELRTGVSVRTVRAEPG-QRPSVGDGRQrFEADLIVAADGTDS 155
                  44.59***************8.66666666655*********99865 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.3   3.5e-09   4.2e-06       1      31 [.       6      36 ..       6      60 .. 0.93
   2 ?   -0.6   0.1       1.3   1.6e+03      10      40 ..     319     349 ..     317     376 .. 0.61

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.5e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31
                   +vGaG++Gl+ A +La+ g +v+lle++dr+
     KIR60914.1  6 VVGAGIGGLAVAGALARSGWQVTLLERADRV 36
                   8***************************996 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.3
                    HHHHHHHCCTE..EEEEE-SSSSSSGGG-EECE CS
  NAD_binding_8  10 vaAylLakagf..dvlllekrdrlGGraasyev 40 
                    ++A+lL++ ++   v  +++ +r+  raa++ +
     KIR60914.1 319 TLASLLRESRLpdAVAAYDRLRRP--RAATVVR 349
                    566677666555456666666665..4444444 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.2e-08   1.4e-05       2      38 ..       4      38 ..       3      48 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.2e-08
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkllrll 38
                +vvvG+G  gl +Agala+ g +Vt++er+d+++   
  KIR60914.1  4 AVVVGAGIGGLAVAGALARSGWQVTLLERADRVR--P 38
                69*******************************9..3 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   1.4   9.6e-08   0.00011       2      31 ..       4      35 ..       3      39 .. 0.93
   2 ?    4.0   0.5     0.026        32     143     288 ..      97     245 ..      68     250 .. 0.65
   3 ?    2.7   0.2     0.063        76      81     156 ..     218     314 ..     172     362 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 9.6e-08
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSS CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgdi 31
                 v++G+Gi Gl++A +Lar g  Vtlle++d+
  KIR60914.1  4 AVVVGAGIGGLAVAGALARSGwqVTLLERADR 35
                59*****************9*********975 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.026
                 EEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEE.EEEEEEEE--GGGHHHH.HTT.CTTTSEEEEEEEEEEEEEECCTHSTGSG CS
         DAO 143 vdpakltaalaraaealGveilegtevtgleeedgkvwgverttpgen.daadavVnaaGawsdll.gll.keldlpispvrgqvlvlkplseklvspa 238
                 v+ + l  al + + ++ ve+++g  v+ +++e g+   v    +g++ ++ad +V a G  s ++ ++l +e ++  s++ +   v+ p+ +++  p 
  KIR60914.1  97 VHREDLHDALIAGLGER-VELRTGVSVRTVRAEPGQRPSV-G--DGRQrFEADLIVAADGTDS-EIrRQLaPESRVVSSGCAAWRAVI-PWYRAPRLP- 188
                 56666777777777777.9**********98877776777.2..2666457788999999665.565666555544447777777788.887766555. PP

                 CSEEEEEEEETTTTEEEEEE...........TTSEEEEEESSEEETTCSSTSCSHHHHHHH CS
         DAO 239 ailpvpetdddgrgvyvtpr...........kdgrvlvGgtadeesgdddpevdeedidel 288
                 a  pv   + ++++ +v ++           + g+++  +ta   +g  +pe++e ++  l
  KIR60914.1 189 ADQPVGGETLGAGYRFVAASlgergssgassR-GGIYWVATA---AGAPRPEPPETQLTLL 245
                 44444435555555555555444455555423.445555554...4444445555555555 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.063
                 EEEEEEEEEES.........SHHHHHHHHHHHHHH.......HHTTT..TEEEEEHHHHHHHSTTST.......TTSEE.EEETTEEEEEHHHHHHHHH CS
         DAO  81 yrrtGllslaa.........deeelealdkllall.......leagl..daelldaeevrelepalp.......gllga.lfypdtgqvdpakltaala 153
                   r G +++a+          e++l  l++++a +       l  ++  +a l+ +e +rel p  p       g  g+ ++  d++++ p +l ++  
  KIR60914.1 218 SSRGGIYWVATaagaprpepPETQLTLLRRWYAGWptpvgelL--DAtdPADLVQQE-IRELRPL-PrsygfpaGP-GGvVLLGDAAHAMPPHLGQGAC 311
                 5667788887533322222224667778888887787766542..223244577665.8888886.2246554333.4425577778887777776655 PP

                 HHH CS
         DAO 154 raa 156
                  a+
  KIR60914.1 312 LAF 314
                 444 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.9e-07   0.00047       3     143 ..       5     155 ..       4     167 .. 0.78
   2 ?   -3.4   0.6       3.1   3.7e+03     276     318 ..     320     358 ..     312     371 .. 0.57

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.9e-07
  Lycopene_cycl   3 vviGaGpAglslAarlteakpglkvvlieaspsllfpnny...vWsdefedlga.....leecvehsWsgtivylddgkkillg......raYgrv 84 
                    vv+GaG  gl++A  l  a+ g +v+l+e ++ + +p       W    ++l a       +++ +  ++  v+ +dg+           r    v
     KIR60914.1   5 VVVGAGIGGLAVAGAL--ARSGWQVTLLERADRV-RPDPTavvLWPNGVRALRAldlgaGLDAIATPLPDGGVRRPDGQWLVQPrptpadRMPVVV 97 
                    8***************..***********99988.655542234655555555555444346788889999***999975544434444488999* PP

  Lycopene_cycl  85 sskrlkeellerlvengvklleakvesveeeeageslvvleggrkirarlvvdarglas 143
                    ++++l+  l   l e    ++   v  v++e+  ++  v +g ++ +a l+v a g  s
     KIR60914.1  98 HREDLHDALIAGLGERVELRTGVSVRTVRAEPG-QRPSVGDGRQRFEADLIVAADGTDS 155
                    **************7777777789999999999.9999999999**********99544 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.1
  Lycopene_cycl 276 varslaeapllasaiaaalresslsarawatlwprerkrqref 318
                    +a  l+e++ l +a+aa+ r+   ++  +at  +++r++ +++
     KIR60914.1 320 LASLLRESR-LPDAVAAYDRL---RRPRAATVVRQTRRMSAVL 358
                    455556665.66666666664...3333444455555555544 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.032        38       2      28 ..     144     170 ..     143     175 .. 0.84
   2 !   13.3   0.0   2.7e-05     0.032     130     175 ..     290     334 ..     269     369 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.032
          SE   2 AkltvvcDGifsklRkelsdnkvevts 28 
                 A l v +DG+ s++R++l  ++  v+s
  KIR60914.1 144 ADLIVAADGTDSEIRRQLAPESRVVSS 170
                 8999**************977666655 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.7e-05
          SE 130 kGlillGDalnmRHPltggGmtvalnDivllskllkpledlsdeek 175
                  G++llGDa     P  g G   a++D++ l+ ll+++  l d+ +
  KIR60914.1 290 GGVVLLGDAAHAMPPHLGQGACLAFEDAATLASLLRES-RLPDAVA 334
                 69*********************************998.5555544 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.1   2.1e-06    0.0025       2      35 ..       4      37 ..       3      43 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.1e-06
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefg 35
                   ++V+G+G++GLa A ++a+ G +v+++e +++++
     KIR60914.1  4 AVVVGAGIGGLAVAGALARSGWQVTLLERADRVR 37
                   69**************************988765 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.3   3.2e-05     0.038       2      33 ..       5      36 ..       4      44 .. 0.93
   2 ?   -2.2   0.0       2.4   2.9e+03      94     111 ..      38      56 ..      33      57 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.2e-05
                EEES-SHHHHHHHHHHHHHTHCEEEE-SCHHH CS
        ApbA  2 ailGaGaiGsllaakLakagadvtlilrsrrl 33
                +++GaG  G  +a+ La+ g++vtl+ r +r+
  KIR60914.1  5 VVVGAGIGGLAVAGALARSGWQVTLLERADRV 36
                69*************************98865 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.4
                 TC.EEEEEESSSSCHHHHH CS
        ApbA  94 pn.tvvlllqNGlgheeel 111
                 p+ t+v+l  NG++++++l
  KIR60914.1  38 PDpTAVVLWPNGVRALRAL 56 
                 44489********998776 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.8   2.2e-05     0.027       3      28 ..       5      30 ..       3      45 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.2e-05
                EEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  3 iViGgGhAGceAAlaaarlGakvlLi 28
                +V+G+G  G++ A a+ar+G +v+L+
  KIR60914.1  5 VVVGAGIGGLAVAGALARSGWQVTLL 30
                8************************9 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.5   0.00015      0.18       3      34 ..       4      35 ..       2      37 .. 0.92
   2 ?    0.8   0.0      0.13   1.5e+02     122     166 ..     112     155 ..      94     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00015
                 EEEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS
  HI0933_like  3 viviGgGaAGlmaAisaakrgkrVlllekakk 34
                  +v+G+G  Gl  A ++a+ g +V+lle+a++
   KIR60914.1  4 AVVVGAGIGGLAVAGALARSGWQVTLLERADR 35
                 79**************************9876 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.13
                  HT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS CS
  HI0933_like 122 agvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlS 166
                  ++v+lr+  +v++v++e +++ +v   +++++ead +v A G  S
   KIR60914.1 112 ERVELRTGVSVRTVRAEPGQRPSVGD-GRQRFEADLIVAADGTDS 155
                  479***********999999888887.9********999999876 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   0.00018      0.22       1      26 [.      11      36 ..      11      37 .. 0.96
   2 ?    1.1   0.0      0.16   1.9e+02     214     261 ..     108     151 ..     100     282 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
                   HHHHHHHHHHHHTTEEEEEEESSSSS CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlEardrv 26
                   + GLa+A  L++ G +Vt+lE  drv
     KIR60914.1 11 IGGLAVAGALARSGWQVTLLERADRV 36
                   68***********************8 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.16
                    HHHHHTTTTEEEETSEEEEEEEEETTCEEEEETTSTEE.EESEEEE-S- CS
  Amino_oxidase 214 ealaeelrgldirlntrVkeikregdgvtvtledgevv.eaDaVvvTvp 261
                      l e   ++++r++  V+ ++ e++  +  + dg+++ eaD  +v+++
     KIR60914.1 108 AGLGE---RVELRTGVSVRTVRAEPGQ-RPSVGDGRQRfEADL-IVAAD 151
                    44444...7888999999999985544.444579998889998.55555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00015      0.18       3      32 ..       5      34 ..       3      43 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
                EEE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N  3 aviGaGtmGagiaavfasagleVvlvdise 32
                 v+GaG+ G  +a ++a++g +V+l+++++
  KIR60914.1  5 VVVGAGIGGLAVAGALARSGWQVTLLERAD 34
                69************************9876 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.5    0.0099        12       3      34 ..       5      33 ..       3      39 .. 0.91
   2 ?   -3.9   0.0       3.8   4.5e+03     195     215 ..     139     159 ..     114     168 .. 0.73
   3 ?    3.4   0.0     0.023        28     317     367 ..     291     340 ..     287     351 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0099
                    EEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase  3 vivGGGtaGwlaAaalakalkgklevtlvese 34
                    v+vG+G+ G  +A ala+ +    +vtl+e +
      KIR60914.1  5 VVVGAGIGGLAVAGALARSG---WQVTLLERA 33
                    8******************9...99****986 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.8
                     S-EEE-SEEEE-SGGG-IIII CS
  Trp_halogenase 195 greveadlfiDcsGfrgllie 215
                      +++eadl++ + G  + +  
      KIR60914.1 139 RQRFEADLIVAADGTDSEIRR 159
                     467999999999998887655 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.023
                     TEEE-CCCTEE--CCCS-HHHHHHHHHHHHHHT--BTT--HHHHHHHHHHH CS
  Trp_halogenase 317 nvvalGlasgfvePlestsihliqaalrrLlallpdksdepaaiaefnrev 367
                     +vv+lG+a+ ++ P  +++  l+ +++ +L++ll +    p a+a ++r  
      KIR60914.1 291 GVVLLGDAAHAMPPHLGQGACLAFEDAATLASLLRES-RLPDAVAAYDRLR 340
                     79*******************************9865.5577788888765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.3   0.00037      0.44      21      49 ..       5      32 ..       2      36 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00037
                EEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 21 vivGaGssGLtaayylakkpdlkvailer 49
                v+vGaG  GL+ a  la++ + +v++ler
  KIR60914.1  5 VVVGAGIGGLAVAGALARS-GWQVTLLER 32
                89*****************.********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 2512.95
//
Query:       KIR60915.1  [L=283]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-08   32.2   0.1    1.4e-07   31.4   0.1    1.4  1  FR47             FR47-like protein
    3.5e-05   23.7   0.0    8.4e-05   22.5   0.0    1.6  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    7.1e-05   22.9   0.1    0.00012   22.2   0.1    1.3  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    0.00027   21.1   0.1    0.00049   20.3   0.1    1.5  1  Acetyltransf_1   Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
      0.032   14.7   0.0      0.066   13.6   0.0    1.6  1  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.1   3.8e-11   1.4e-07      20      81 ..     212     272 ..     194     277 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 3.8e-11
                 TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEEE CS
        FR47  20 dggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfekie 81 
                 d  e+ ++ +lp +rrrGl+  +++ la++++++g +++ + + s++ + r+y ++Gf+ i 
  KIR60915.1 212 DTAEIAGVATLPAARRRGLAAAVTATLAHALRAAGTDLVFLSAGSEDIA-RVYVRVGFRRIG 272
                 4489*******************************99877666666655.7********984 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.3e-08   8.4e-05      40     112 ..     200     274 ..     169     278 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.3e-08
  Acetyltransf_10  40 gkiv.Gvi.elrdgshisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnasp.yavpfYeklGFkavgee 112
                      g ++ G++ ++ d+ +i+ ++  p++r++G+++a   ++ ++++ +g    + + a +    ++Y ++GF+++g  
       KIR60915.1 200 GALAsGMAmRVGDTAEIAGVATLPAARRRGLAAAVTATLAHALRAAGTD-LVFLSAGSeDIARVYVRVGFRRIGTA 274
                      445547775668888****************************988877.8888888879999*********9875 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   3.2e-08   0.00012      73     126 ..     213     269 ..     206     271 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 3.2e-08
                     EEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--.SS..HHHHHTTT-E CS
  Acetyltransf_9  73 aagvtgVavapehrgrgvlskLlaraleemreegqplsllfP.ss..ipiYrrfGye 126
                     +a ++gVa+ p  r+rg++ + +a++   +r+ g  l++l + s+  +++Y r G++
      KIR60915.1 213 TAEIAGVATLPAARRRGLAAAVTATLAHALRAAGTDLVFLSAgSEdiARVYVRVGFR 269
                     6789**************************************633335888888886 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   1.4e-07   0.00049      50     117 .]     208     268 ..     146     268 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.4e-07
                     EEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEE.EEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  50 llkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivl.aveedndaairlYeklGF 117
                     ++       ++a+i ++a  p++r++Gl+ a   +l++ +r  g + ++l a     +   r+Y ++GF
      KIR60915.1 208 MRVG-----DTAEIAGVATLPAARRRGLAAAVTATLAHALRAAGTDLVFLsAG---SEDIARVYVRVGF 268
                     3333.....46***************************999999999999333...4445899999998 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.8e-05     0.066      24      75 ..     211     269 ..     169     270 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.8e-05
                     S..TCTEEEEE-GGGTTSSHHHHHHHH.TT....SEEEEE.EEEETHH..HHHHHHHHTTEE CS
  Acetyltransf_7  24 d..aeitrlaVdpeyrgkGiGraLlea.ae....kgiile.qlelnae..kaikfYeklGFe 75 
                     +  aei ++a++p++r++G++ a  +  a+     g   +  + l+a     ++ Y + GF+
      KIR60915.1 211 GdtAEIAGVATLPAARRRGLAAAVTATlAHalraAG---TdLVFLSAGseDIARVYVRVGFR 269
                     14578889****************874211233445...22234533122345699999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2005.78
//
Query:       KIR60916.1  [L=1554]
Description: glutamate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-170  567.7   0.0   1.8e-170  567.2   0.0    1.2  1  GATase_2         Glutamine amidotransferases class-II
     5e-150  499.7   0.0     7e-148  492.7   0.0    2.4  3  Glu_synthase     Conserved region in glutamate synthase
   1.5e-113  378.9   0.0   2.3e-113  378.3   0.0    1.3  1  Glu_syn_central  Glutamate synthase central domain
    1.4e-75  253.0   2.2    2.3e-75  252.4   2.2    1.3  1  GXGXG            GXGXG motif
      0.002   17.2   0.6     0.0046   16.0   0.6    1.5  1  FMN_dh           FMN-dependent dehydrogenase
     0.0086   16.0   0.3        3.8    7.6   0.1    3.5  4  LcnG-beta        Lactococcin G-beta


Domain annotation for each model (and alignments):
>> GATase_2  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  567.2   0.0    6e-174  1.8e-170       1     420 []      28     453 ..      28     453 .. 0.98

  Alignments for each domain:
  == domain 1  score: 567.2 bits;  conditional E-value: 6e-174
                 -EEEEEE-SSS--BSHHHHHHHHHHHHGGGGS-B-TTSSSBSEEEEEEE--HHHHHHHHHHTT-----GGG-EEEEEEE-SSHHHHHHHHHHHHHHHHH CS
    GATase_2   1 CGvgfiaelkgkkshkivekalealenleHRGavgadektGDGaGillqiPdeflrkeakekgielpeageyavgmlflpkdeekaeeakkileeivee 99 
                 CGv+f+a+l g++sh++v ++l al +l+HRGa ga+++tGDGaGi++q+Pd+flr+++   ++ lp ageya+g +flp+d++ +++a+++le+ +  
  KIR60916.1  28 CGVAFVADLYGRRSHSVVANGLGALLRLDHRGARGAEHNTGDGAGIMIQVPDAFLREVV---DFPLPPAGEYATGLVFLPTDDDGEARARRVLEKYALV 123
                 **********************************************************9...9************************************ PP

                 TT-EEEEEEE--B-GGGS-HHHHHH--EEEEEEEE-TT-...........--HHHHHHHHHHHHHHHGGG.....-BTTBEEEEEESSEEEEEESS-GG CS
    GATase_2 100 eglevlgwRevpvdksvlgeaakesePsieqvfvekked...........lseeelerklyviRkriekeiakkkaekefYicslssrtivYkglltse 187
                 eg evlgwR+vp+d s lg++a++++P+++qvf+++++            ls  +l+r  +++Rk++e+e+a  +     Y++sls+rt+v+kg+lt++
  KIR60916.1 124 EGAEVLGWRDVPTDPSGLGATALAAMPRVRQVFLAASRLtdtpagpagspLSGLDLDRVAFCVRKQAERETA--ERGVPAYFPSLSCRTMVFKGMLTPD 220
                 **********************************6554334555677777999*****************87..578899******************* PP

                 GHHHHBHGGGSTT--BSEEEEEE---SSSS--GGGSSS-SSEEEEE--TTHHHHHHHHHHHCTT--BT-HH.HHHTC--S--TTS-HHHHHHHHHHHHH CS
    GATase_2 188 qlkefykdlkdeelesalalvHsRfstntfPsWelaqPlRllaHnGEintlrGnknwmkareaelksellgdelekllPivneegsDsasldnvlellv 286
                 ql ef++dl+d +++sa+alvHsRfstntfPsW+la+P+R++aHnGEint+rGn+nwm+area l+s+ l  +++++ P+++  +sDsa++d+vlell+
  KIR60916.1 221 QLPEFFPDLTDGRVDSAIALVHSRFSTNTFPSWPLAHPYRIIAHNGEINTIRGNRNWMQAREALLRSPNLPGNIRRVFPVCTPAASDSANFDEVLELLH 319
                 *************************************************************************************************** PP

                 HTT--HHHHHHHHS----TT-GGGTHHHHHHHHHHTTT-----SSEEEEEE-SSEEEEEE-TT--S--EEEEETT--EEEESSTTSS---GGGEEEEEE CS
    GATase_2 287 lsgrslaealmlliPeawennksldkekkafyeyasalmepWDGPalivftdGkvvgavLDRnGLRPaRylvtkddlvvlasEvGvldleeeevvekgr 385
                 l+grsl++a++++iPeawen+++++++k+afy ++++lmepWDGPa+++ftdG++vgavLDRnGLRP+R++ t d+lvvl+sE+Gvldl++++vv kgr
  KIR60916.1 320 LAGRSLPHAVLMMIPEAWENDPDMRADKRAFYRFHASLMEPWDGPASVAFTDGEIVGAVLDRNGLRPGRWWRTADGLVVLGSEAGVLDLDPATVVAKGR 418
                 *************************************************************************************************** PP

                 --TT-EEEEETTTTEEEEHHHHHHHHHTTS-HHHH CS
    GATase_2 386 lqPGrmllvdleegriledeeikkkiaskkpykew 420
                 lqPGrm+lvd+  gri++d+eik+++a+++py ew
  KIR60916.1 419 LQPGRMFLVDTVAGRIVSDDEIKTELAAAQPYAEW 453
                 **********************************9 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0051        15     248     300 ..     649     702 ..     644     721 .. 0.80
   2 ?   -3.5   0.0       1.5   4.4e+03     344     367 ..     726     749 ..     724     750 .. 0.91
   3 !  492.7   0.0  2.3e-151    7e-148       3     367 ..     830    1194 ..     828    1195 .. 0.97

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0051
                   HHHB---HHHHHHHHHHHHHHTT-GGG-EEEE.ESS--SHHHHHHHHHHT-SEE CS
  Glu_synthase 248 ikhaGlPlelalaevdqtlkeeglrdrvslia.dGglktgadvvkalalGAdav 300
                   ++ a +P +l  a+v+q l++e+ r +v l + +G+ +  +  ++ +  GA av
    KIR60916.1 649 ADLAPIPSLLLTAAVHQHLVREQTRTQVALVVeSGDCREVHHAAVLIGYGAAAV 702
                   677889999999*****************9983577887777777777777776 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.5
                   HHHHHHHHHHHHHHHHHHHHHHT- CS
  Glu_synthase 344 aervvnyikalaeevrellaalgi 367
                   a+ v ny+k l ++v +++ ++gi
    KIR60916.1 726 AKAVRNYVKGLGKGVLKIMSKMGI 749
                   57899*****************97 PP

  == domain 3  score: 492.7 bits;  conditional E-value: 2.3e-151
                    S-HHHHHHHHHHHHH---HHHHHHHHHHHTS..-S-SGGGGEEE--SS--.--GGGS--HHHHHTTEE---B-TTTS-HHHHHHHHHHHHHHT-B CS
  Glu_synthase    3 neievikllqkavqveskesidkyrekleer.evlkakrdlleldaaeealikleevepalkikkriltsamSyGalseeahealakamnrlgtk 96  
                     ++e+  llq+a+++ +++ + +y+ k++e   +++++r l+ l++  ++ ++l+evepa++i+kr++t+amSyG++s eahe+la+amnrlg+k
    KIR60916.1  830 FNPETVFLLQHATRSRQYDVFRQYTAKVDELaAKAGSLRGLFTLRTGVRPPVPLDEVEPASEIVKRFATGAMSYGSISAEAHETLAIAMNRLGGK 924 
                    57788889*****************9998861578899*******999999******************************************** PP

                    -EETTS---GGGGS.-----SEEEE-TT-TT--HHHHHH-SEEEEE---TTSTTS--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHH CS
  Glu_synthase   97 sntGEGGedeerlk.takdvaikQvasgrFGvteeyLnnakaleikiaQGakpgeGgqlpgeKvseeiakiRkikpgvdliSPaphhdiysiedl 190 
                    sntGEGGed erl+ +a+   +kQ+asgrFGvt+eyL+na+ l+ik+aQGakpgeGgqlpg+Kv ++ia++R+ +pgv+liSP+phhdiysiedl
    KIR60916.1  925 SNTGEGGEDVERLHdPARRSSVKQIASGRFGVTSEYLVNADDLQIKMAQGAKPGEGGQLPGNKVWPWIARTRHATPGVGLISPPPHHDIYSIEDL 1019
                    **********99872566779************************************************************************** PP

                    HHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEEHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEESS--S CS
  Glu_synthase  191 aqliedLkevnkeakvsvKlvaeagvetiaagvakanadiilidGleGGTGAspkssikhaGlPlelalaevdqtlkeeglrdrvsliadGglkt 285 
                    aql++dLk+vn+ a+v vKlv+e+gv+t+aagvak +ad+ili+G++GGTGAsp +s khaG+P+el+lae++qtl  ++lrdrv++++dG+lkt
    KIR60916.1 1020 AQLVHDLKCVNPAARVHVKLVSETGVGTVAAGVAKLKADVILISGHDGGTGASPLNSLKHAGTPWELGLAEAQQTLLLNKLRDRVTVQVDGQLKT 1114
                    *********************************************************************************************** PP

                    HHHHHHHHHHT-SEEE-SHHHHHHTT--S---GGGT--TTSSS---HHHH..TT----HHHHHHHHHHHHHHHHHHHHHHT- CS
  Glu_synthase  286 gadvvkalalGAdavgigtaalialgCimarvChtntCpvGvatqdpeLrkrlkveekaervvnyikalaeevrellaalgi 367 
                    g+dv++a++lGA+++g++ta+li  gC+m+rvCh++tCpvG+atq+p Lr  +++++ +e v n++ +laeevr +la+lg 
    KIR60916.1 1115 GRDVLVAALLGAEEFGFATAPLIVEGCVMMRVCHLDTCPVGIATQNPVLR--ERFTGRPEFVENFFLFLAEEVRGYLAELGL 1194
                    **************************************************..9**************************997 PP

>> Glu_syn_central  Glutamate synthase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.3   0.0  7.7e-117  2.3e-113       2     279 .]     480     767 ..     479     767 .. 0.96

  Alignments for each domain:
  == domain 1  score: 378.3 bits;  conditional E-value: 7.7e-117
                      HHHHTT--HHHHHHTHHHHHHHSS--EE-S---S--TTT-SS---GGGGEEE----SSS----TTTTGGG-B--EEES----SSS--GGGG-EE CS
  Glu_syn_central   2 rqkafgyteedlelllepmakegkeaigsmGdDtplavLsekprllydYFkqlfAqVTNPpiDpiREelvmsletllGkegnlleeeeeqakrl 95 
                      rq++fgytee+l++ll+pma++g+e++gsmG+Dtp+a Ls++prllydYF+qlfAqVTNPp+D+iREelv+sl+ ++G+egnll++ +++++++
       KIR60916.1 480 RQQTFGYTEEELKILLAPMARTGAEPLGSMGTDTPIAPLSTRPRLLYDYFHQLFAQVTNPPLDAIREELVTSLQHTIGAEGNLLDPGPASCRQI 573
                      89******************************************************************************************** PP

                      EESSSB--HHHHHHH.......HHSSS-EEEEESEE.......SHHHHHHHHHHHHHHHHHTT-SEEEEESS--STTEEE--HHHHHHHHHHHH CS
  Glu_syn_central  96 klesPiLteeeleklkkl...kekkefkaktlditfeae....aleealerlceeaeeavregaeilvLsDrkvseervpipslLavgavhhhL 182
                      +l  P+++++el+k+ ++    + ++fka +++ +++++    +++++l+++c++++ea+++g++ilvLsDr+ +++ +pipslL ++avh+hL
       KIR60916.1 574 VLPYPVIDNDELAKILSIdedGDLPGFKAVRVSGLYRVRdggaGIKARLTEICRHVSEAIEDGVRILVLSDRDSNADLAPIPSLLLTAAVHQHL 667
                      ***************99987655789**********98876655************************************************** PP

                      HHTT-GGG-EEEEEESS--SHHHHHHHHHTT-SEEEEHHHHHHHHHHHTTTS-...----HHHHHHHHHHHHHHHHHHHTT--BHHHHHHS--E CS
  Glu_syn_central 183 vrkglrtkvslvvesgearevhhfavllgyGadavnPylaletieklveegal...aeeeleknyrkavekGllKimskmGistlqSYkgaqif 273
                      vr+++rt+v+lvvesg++revhh+avl+gyGa+avnPyla+e++e+++++gal   + +++ +ny+k++ kG+lKimskmGist++SY+gaq+f
       KIR60916.1 668 VREQTRTQVALVVESGDCREVHHAAVLIGYGAAAVNPYLAFESVEDMIATGALtgvEPAKAVRNYVKGLGKGVLKIMSKMGISTVSSYCGAQVF 761
                      ***************************************************99666666666******************************** PP

                      EESSB- CS
  Glu_syn_central 274 eavGls 279
                      eavGl+
       KIR60916.1 762 EAVGLD 767
                      ****95 PP

>> GXGXG  GXGXG motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.4   2.2   7.8e-79   2.3e-75       2     188 ..    1275    1467 ..    1274    1469 .. 0.94

  Alignments for each domain:
  == domain 1  score: 252.4 bits;  conditional E-value: 7.8e-79
                  EE-TT--STTHHHHHHHHHHHTTT---.-EEEEEEEEEE-TTTTTT--TTEEEEEEEEE-STTTTT-ESSEEEEE--T.........T-SS-GGGSB CS
       GXGXG    2 eirnldrsvgtilsneiakrygeeglpedtikiklkGsaGqslgaflakGltleleGdandyvGkglsgGkivikpsk.........eskfkaeeni 89  
                  ++rn +rsvg++l++e+++r+g +glp dti++ l+G+aGqs+gafl+ G+tl+l+GdandyvGkglsgG++v++p++         +s  +ae++i
  KIR60916.1 1275 AVRNEHRSVGAMLGGEVTRRFGGAGLPADTIEFLLRGTAGQSFGAFLPGGVTLRLHGDANDYVGKGLSGGRLVVRPDAaapfvdgeaASGERAEDQI 1371
                  689**************************************************************************955555544334567899** PP

                  -S-SSTTTT--SEEEEESSB--SSTTTT-SS-EEEESEB-SSTTTT-EEEEEEE-S-B-SSBTTT--EEEEEEE-SSSTHHHHB-TTT-EEEES-SH CS
       GXGXG   90 ivGnvvlygatgGklfirgkageRfavrnsgatavvegvgdhgceYmtGGvvvvLgktgrnfaaGmsgGiayvldedekfekklnkelvelekvede 186 
                  i+Gn++lygat+G++f+rg++geRfavrnsga+avvegvgdhgceYmtGG+vvvLg+tgrnfaaGmsgG+ayv+  de+   ++n+elv+l+ ++de
  KIR60916.1 1372 IAGNTILYGATAGEVFLRGRVGERFAVRNSGAVAVVEGVGDHGCEYMTGGTVVVLGETGRNFAAGMSGGTAYVWRLDER---RVNTELVDLSPLSDE 1465
                  *****************************************************************************98...***********9999 PP

                  HH CS
       GXGXG  187 ee 188 
                  e+
  KIR60916.1 1466 ES 1467
                  86 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.6   1.5e-06    0.0046     233     298 ..    1052    1130 ..    1037    1138 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.5e-06
                  HHHTTESEEEE--GGG.......TSSTT---HHHC.HHHH.....HHHH..SS-EEEESS--SHHHHHHHHHTT-SEEE CS
      FMN_dh  233 aveaGvdgivvSNHGG.......Rqldgapatidv.Lpei.....veavggrievlvDgGirrGsDvlkAlalGAdavl 298 
                  ++++ +d i++S H G        +l +a ++ +  L e       +++++r++v vDg  ++G Dvl A  lGA+  +
  KIR60916.1 1052 VAKLKADVILISGHDGgtgasplNSLKHAGTPWELgLAEAqqtllLNKLRDRVTVQVDGQLKTGRDVLVAALLGAEEFG 1130
                  678889********9967777776666666666653555544444455589************************8655 PP

>> LcnG-beta  Lactococcin G-beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.47   1.4e+03      10      19 ..      91     100 ..      90     101 .. 0.88
   2 ?   -3.8   0.0       4.4   1.3e+04      15      28 ..     548     561 ..     547     561 .. 0.85
   3 !    7.6   0.1    0.0013       3.8       7      25 ..     721     742 ..     717     746 .. 0.79
   4 ?    3.8   0.0     0.019        57       9      24 ..     886     901 ..     883     905 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.47
   LcnG-beta  10 ePAyeFlkGl 19 
                  PA+e+ +Gl
  KIR60916.1  91 PPAGEYATGL 100
                 6********8 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.4
   LcnG-beta  15 FlkGlaKGiiKEGN 28 
                  ++ l   i+ EGN
  KIR60916.1 548 LVTSLQHTIGAEGN 561
                 68889999*****9 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0013
   LcnG-beta   7 aWlePAy...eFlkGlaKGiiK 25 
                   +ePA    +++kGl+KG+ K
  KIR60916.1 721 TGVEPAKavrNYVKGLGKGVLK 742
                 558888534489*******988 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.019
   LcnG-beta   9 lePAyeFlkGlaKGii 24 
                 +ePA e +k +a G+ 
  KIR60916.1 886 VEPASEIVKRFATGAM 901
                 8*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.87u 0.26s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 10190.62
//
Query:       KIR60917.1  [L=501]
Description: glutamate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-26   91.5   3.6      1e-25   90.6   3.6    1.5  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    2.1e-23   82.2   0.0      3e-23   81.7   0.0    1.2  1  Fer4_20         Dihydroprymidine dehydrogenase domain II, 4Fe
    2.2e-09   37.4   0.8    6.4e-09   35.9   0.8    1.9  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    2.7e-07   30.3   6.4      3e-07   30.1   0.8    2.6  2  Amino_oxidase   Flavin containing amine oxidoreductase
    2.8e-07   30.1   0.1      0.011   15.0   0.0    3.2  3  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    3.1e-07   30.9   2.8    0.00039   20.9   0.1    3.1  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    5.1e-07   29.4   0.5    5.1e-07   29.4   0.5    1.6  2  FAD_oxidored    FAD dependent oxidoreductase
    1.1e-05   25.2  13.8    2.9e-05   23.8   1.5    2.9  3  DAO             FAD dependent oxidoreductase
    1.2e-05   24.2   0.2    2.9e-05   22.9   0.2    1.6  1  HI0933_like     HI0933-like protein
    3.9e-05   23.1   0.4    8.3e-05   22.0   0.4    1.5  1  FAD_binding_3   FAD binding domain
    4.3e-05   23.9   1.9      0.029   14.8   0.1    2.6  2  NAD_binding_7   Putative NAD(P)-binding
    6.3e-05   22.2   1.8    6.3e-05   22.2   1.8    2.4  2  FAD_binding_2   FAD binding domain
    0.00017   20.9   0.1    0.00035   19.9   0.1    1.4  1  Thi4            Thi4 family
      0.001   18.2   1.3      0.002   17.3   0.8    1.7  2  GIDA            Glucose inhibited division protein A
     0.0016   18.3   0.1     0.0027   17.6   0.1    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0045   16.3   2.2      0.074   12.3   0.0    2.3  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.018   15.0   8.6       0.21   11.5   0.3    3.7  4  NAD_binding_9   FAD-NAD(P)-binding
      0.024   13.1   0.0      0.069   11.6   0.0    1.6  2  FMO-like        Flavin-binding monooxygenase-like
      0.031   14.3   0.0      0.065   13.2   0.0    1.5  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
      0.046   13.4   0.2       0.11   12.1   0.2    1.8  1  ApbA            Ketopantoate reductase PanE/ApbA
      0.065   13.0   2.9        0.1   12.4   0.0    2.5  3  DJ-1_PfpI       DJ-1/PfpI family
      0.084   13.0   0.1       0.29   11.3   0.0    1.9  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
      0.097   11.8   1.1        2.7    7.1   0.0    2.4  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
       0.14   11.2   4.6      0.065   12.3   0.4    2.3  3  Lycopene_cycl   Lycopene cyclase protein
       0.33    9.8   2.3       0.57    9.0   0.5    2.1  2  Trp_halogenase  Tryptophan halogenase
       0.35   10.9   1.2         28    4.8   0.1    2.4  2  AdoHcyase_NAD   S-adenosyl-L-homocysteine hydrolase, NAD bind
       0.48   10.3   5.1          1    9.2   1.0    2.6  2  YjeF_N          YjeF-related protein N-terminus
        1.3    9.6   4.0        1.7    9.3   0.1    3.0  3  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
        6.2    7.6   8.7       0.58   10.8   1.2    2.2  2  Fer4_4          4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   3.6   1.6e-28     1e-25       2     294 .]     145     470 ..     144     470 .. 0.71

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 1.6e-28
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.HHHHCHHHH.CCCCHCCT.CEEEEESCEEEEETEEECTCEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias.evvkklnqg.ielllgee.vvkidpgkkkvklekkkegdee 96 
                  +v+v+G+GpAGlaaa++la+ag+ vt++e+++++   g ll + +  ++ +++ +  + + +l+++ +++++g++ +v++   ++++           
   KIR60917.1 145 SVAVVGSGPAGLAAAQQLARAGHAVTVYERDDAI---GGLLRYGIPDFKLEKQHIDlR-LAQLEAEgVRFRTGVHvGVDV--TAEQLRE--------- 227
                  79**************************655533...346667777776666655533.344444449999994434444..3333444......... PP

                  EEEESEEEE---E.EE-BC.TCTTC..TTBEECCSECHHHHHHCCSS-T..................SEEEEES-SHHHHHHHHHHHHHT-E.EE... CS
                  xxxxxxxxxxxxx.xxxxx.xxxxx.xxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxx.xx... RF
  Pyr_redox_2  97 kiaydklvlAtGs.sprdl.gipGv.aenvgklvrtldsaealklkllp..................krivvvGgGyiGvElAaalaklgke.vt... 169
                    a d+++lA G+ + rd   +pG    +v++ + +l  a+++  +  +                  k++v++GgG ++ ++ +++++ g+  v+   
   KIR60917.1 228 --AHDAVLLACGAlQGRDTpETPGRaLRGVHQAMAHLVAANRVVAAAGEgrpalavlpdgtpidaagKHVVIIGGGDTAADCLGVAHRQGAAgVHqld 323
                  ..78********9844544488887644444455555555555555555566666699*******************************995555666 PP

                  .....................EEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE....EEEEEETTSCEEEESEEEE-S-EEES-H CS
                  .....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 170 .....................lveardrllraldkelsaaleealekeGvevklgtsvkeidgnge....klevvledgeeidadlvvvavGvrpste 242
                                       ++   +   ++ d+ ++aa++e + + G   +   ++ e++ +++     ++ v ++++e++adlv++a+G++   e
   KIR60917.1 324 lypepphardaardpwptwpwILRSYPAHEEGGDRVFAAAVQEFVDD-GTGQVRAVRIAEVTVEKRdgrrIVTAVPGSERELPADLVLLAIGFEGTEE 420
                  66666666666667777777533333333344444445555444444.44444444554444444443544669********************9877 PP

                  HCS.HCCT-EEEETTEEE--TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 243 lle.eklglelderggivvdeflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                       + g++ + rg+i   +  +t  +g++++GD+    +g  l++ A+++G
   KIR60917.1 421 QPLlAQFGVARNARGAIDARPDWQTDADGVFVAGDMH---RGASLIVWAIAEG 470
                  6447********************************9...9999999888887 PP

>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.0   4.9e-26     3e-23       2     109 ..      24     129 ..      23     133 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 4.9e-26
                 TTS-S-SB----HHHHHHHHTT----TT-HHHHCSTT---HHHHHHHHHTT-HHHHHHHHHHH-S-HHHHHHHS-GGGTGCCS-GGGTTB.----HHHH CS
     Fer4_20   2 aknfkevalglteeealeeAsRClqCkkapcvkgCPveidipefikkiaegnleeaakiiketnslpavcgrvCpqeelCegaCvlekkgkepvaigkl 100
                 +++++ev+    e  + e+A+RC++C  + c++gCP+ ++ip++ + +++g +++a++ +++tn++p+ +gr+Cp    Ce+aCvl+  g +pv+i+++
  KIR60917.1  24 ITDWREVYPPAGEALIREQATRCMDCGIPFCHDGCPLGNRIPDWNDLVRTGGWDAAVESLHATNNFPEFTGRLCPAP--CEAACVLGIGGGQPVTIKQV 120
                 67899**********************************************************************99..********9999******** PP

                 HHHHHHHHH CS
     Fer4_20 101 erfvadaar 109
                 e  +adaa+
  KIR60917.1 121 EVEIADAAA 129
                 ****99886 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.8     1e-11   6.4e-09       1      36 [.     148     183 ..     148     229 .. 0.91

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1e-11
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraa 36 
                    +vG+G +Gl+aA+ La+ag+ v+++e+ d +GG ++
     KIR60917.1 148 VVGSGPAGLAAAQQLARAGHAVTVYERDDAIGGLLR 183
                    8********************************765 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.8   4.9e-10     3e-07       2      31 ..     154     183 ..     153     185 .. 0.94
   2 ?    2.4   0.5      0.12        75     409     451 ..     438     477 ..     422     478 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 4.9e-10
                    HHHHHHHHHHHTTEEEEEEESSSSSBTTS- CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGGRir 31 
                    aGLaaA+qL++aG+ Vtv+E +d +GG +r
     KIR60917.1 154 AGLAAAQQLARAGHAVTVYERDDAIGGLLR 183
                    9**************************765 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.12
                    HHHHHHCHHCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHHHHH CS
  Amino_oxidase 409 dydplakpegdprlffAGehtsreypgtvegAilSGlraAari 451
                    d +p  ++   +++f+AG+       + +  Ai  G+ aAa+i
     KIR60917.1 438 DARPDWQT-DADGVFVAGDMHR--GASLIVWAIAEGRAAAAAI 477
                    55667777.899********77..6666*************98 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.8e-05     0.011       2      34 ..     148     179 ..     141     203 .. 0.82
   2 !    6.2   0.1    0.0086       5.3     161     186 ..     289     314 ..     255     323 .. 0.83
   3 ?    5.1   0.0     0.018        11     225     305 .]     373     454 ..     358     454 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.8e-05
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkgnign 34 
                  ++G GPaGlaaa +l +ag   +++ E++ +  
   KIR60917.1 148 VVGSGPAGLAAAQQLARAGH-AVTVYERDDAIG 179
                  79999999999999999998.788999884443 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0086
  Pyr_redox_3 161 kyagqkvvViGgknSavDaAlelvrk 186
                  + ag++vv+iGg+++a+D      r+
   KIR60917.1 289 DAAGKHVVIIGGGDTAADCLGVAHRQ 314
                  67899*************86555555 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.018
  Pyr_redox_3 225 ekikvlfnaevkeikekeeeykvktedgkkvev.kddvvlatGykpdlsf..lkkslfeldedgrpvlteeteetnvpglflaG 305
                  ++++++  aev+  k++ ++  v++  g++ e   d v+la+G++ + ++  l++ ++++++ g +   +++ +t  +g+f+aG
   KIR60917.1 373 GQVRAVRIAEVTVEKRDGRR-IVTAVPGSERELpADLVLLAIGFEGTEEQplLAQFGVARNARGAIDARPDW-QTDADGVFVAG 454
                  55666777777655555444.45555556666614555666***9986554377788888888888888876.699*******9 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   6.2e-07   0.00039       1      35 [.     145     179 ..     145     222 .. 0.84
   2 !    8.8   0.1    0.0038       2.4       1      22 [.     294     315 ..     294     326 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6.2e-07
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35 
                 +v+vvG+G  gl +A+ la+ g+ Vtv er d + 
  KIR60917.1 145 SVAVVGSGPAGLAAAQQLARAGHAVTVYERDDAIG 179
                 699*****************************997 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0038
                 EEEEECSSHHHHHHHHHHHHTT CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelg 22 
                 +vv++GgG+++ ++ g++++ g
  KIR60917.1 294 HVVIIGGGDTAADCLGVAHRQG 315
                 89***********999988766 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.5   8.2e-10   5.1e-07       2      42 ..     146     186 ..     145     236 .. 0.89
   2 ?   -3.6   0.0       8.7   5.4e+03     105     135 ..     359     395 ..     349     396 .. 0.58

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 8.2e-10
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsgl 42 
                   v VvG+gpaG+aAA + araG  v + e+++ +GGll  g+
    KIR60917.1 146 VAVVGSGPAGLAAAQQLARAGHAVTVYERDDAIGGLLRYGI 186
                   89*********************************997765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 8.7
  FAD_oxidored 105 llntrlvevekeg......kriesvtveskegrktir 135
                   ++ + ++e + +g       ri +vtve+++gr+ ++
    KIR60917.1 359 VFAAAVQEFVDDGtgqvraVRIAEVTVEKRDGRRIVT 395
                   5555555555554444444568888887665766555 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   1.5   4.7e-08   2.9e-05       2      33 ..     146     179 ..     145     190 .. 0.94
   2 !    7.8   1.9    0.0034       2.1     154     270 ..     201     303 ..     195     354 .. 0.61
   3 ?   -0.3   0.1         1   6.3e+02     151     203 ..     344     399 ..     330     455 .. 0.59

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 4.7e-08
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgdiag 33 
                 v+++G+G +Gl++A +Lar+g  Vt++e++d +g
  KIR60917.1 146 VAVVGSGPAGLAAAQQLARAGhaVTVYERDDAIG 179
                 99******************99********8887 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0034
                 HHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCT.HSTGSGCSEEEEEEEETT CS
         DAO 154 raaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplse.klvspaailpvpetdddg 250
                 +++ea Gv++++g   +g++ +   + ++       ++a dav +a+Ga  +  +   +e   p +++rg + ++++l   +      +++     ++ 
  KIR60917.1 201 AQLEAEGVRFRTG-VHVGVDVT---AEQL-------REAHDAVLLACGALQGrDT---PET--PGRALRGVHQAMAHLVAaNR----VVAA---AGEGR 276
                 4678899999999.43455332...2223.......234599******8844444...666..8899*****99987766222....2222...33344 PP

                 TTEEEEEE.......TTSEEEEEESSE CS
         DAO 251 rgvyvtpr.......kdgrvlvGgtad 270
                   + v+p+        ++ v++Gg ++
  KIR60917.1 277 PALAVLPDgtpidaaGKHVVIIGGGDT 303
                 444444444444432334455688765 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1
                 HHHHH..HHHTT-EEEESECEEEEEEEE.TCEEEEE.....EECTEEEEEEEEEEE--GGG CS
         DAO 151 alara..aealGveilegtevtgleeed.gkvwgve.....rttpgendaadavVnaaGaw 203
                 +++r   a + G++ ++ + v+++ +++ g+v  v+     +   + +d  + +V a  ++
  KIR60917.1 344 WILRSypAHEEGGDRVFAAAVQEFVDDGtGQVRAVRiaevtV---EKRDG-RRIVTAV-PG 399
                 555555677788888888888887443357777776653322...22222.4444444.33 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.2   4.8e-08   2.9e-05       2      36 ..     145     179 ..     144     184 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.8e-08
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36 
                  +v+v+G G+AGl aA ++a++g+ V+++e+ +++g
   KIR60917.1 145 SVAVVGSGPAGLAAAQQLARAGHAVTVYERDDAIG 179
                  699***************************99988 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.4   1.3e-07   8.3e-05       3      33 ..     145     175 ..     144     180 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.3e-07
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekr 33 
                    +V++VG+GpaGl +a+ L++aG  v++ e+ 
     KIR60917.1 145 SVAVVGSGPAGLAAAQQLARAGHAVTVYERD 175
                    599***********************99986 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   4.6e-05     0.029       6      44 ..     142     178 ..     139     242 .. 0.78
   2 !    7.7   0.3    0.0075       4.7       4      21 ..     289     306 ..     287     319 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.6e-05
  NAD_binding_7   6 kgkkvlvvGgGevAarkvrklleagakvtvvapevkeel 44 
                    +g++v vvG G+ ++  +++l++ag  vtv+  +  +++
     KIR60917.1 142 TGRSVAVVGSGPAGLAAAQQLARAGHAVTVYERD--DAI 178
                    799***************************9988..333 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0075
  NAD_binding_7   4 dlkgkkvlvvGgGevAar 21 
                    d  gk+v+++GgG+ Aa 
     KIR60917.1 289 DAAGKHVVIIGGGDTAAD 306
                    7789**********9985 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   1.8     1e-07   6.3e-05       2      36 ..     146     180 ..     145     186 .. 0.92
   2 ?   -0.0   1.0      0.58   3.6e+02     175     205 ..     212     253 ..     178     288 .. 0.61

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1e-07
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36 
                    v V+GsG AGLaAA ++a+aG+ v+v e  ++ gg
     KIR60917.1 146 VAVVGSGPAGLAAAQQLARAGHAVTVYERDDAIGG 180
                    89**************************9998877 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.58
                    EEEEEEETTTTCEEEEEESEEEE-----GG............ CS
  FAD_binding_2 175 tGavvenpesgrevrirakavvlatgGfgr...........a 205
                    tG+ v  + + ++ r + +av+la+g+ ++            
     KIR60917.1 212 TGVHVGVDVTAEQLREAHDAVLLACGALQGrdtpetpgralR 253
                    455555556677777455599999999998655544443332 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   5.7e-07   0.00035      19      57 ..     145     182 ..     142     192 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 5.7e-07
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvailersvspGGGa 57 
                  v++vG+G++GL+aa+ la++ +  v++ er  ++GG  
  KIR60917.1 145 SVAVVGSGPAGLAAAQQLARA-GHAVTVYERDDAIGGLL 182
                 589******************.**************965 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.8   3.3e-06     0.002       2      32 ..     146     175 ..     145     184 .. 0.86
   2 ?   -2.9   0.0       4.5   2.8e+03     108     153 ..     195     240 ..     190     244 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.3e-06
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES-G CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLithkl 32 
                 v V+G G AG++AA ++ar+G+ v+ + ++ 
  KIR60917.1 146 VAVVGSGPAGLAAAQQLARAGHAVTVY-ERD 175
                 89**********************998.444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.5
                 STTEEEEES-EEEEEECTTEEEEEEETTS-EEEEC.EEEE--TT-BT CS
        GIDA 108 epnleiieeeveeliveekkvkgvvtedgetikak.avviatGtflk 153
                 + +l + + e+e +  +++   gv  + ++  +a+ av +a G+ l+
  KIR60917.1 195 HIDLRLAQLEAEGVRFRTGVHVGVDVTAEQLREAHdAVLLACGA-LQ 240
                 56677777777777777777777765555555544477788887.55 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   4.3e-06    0.0027       2      34 ..     146     178 ..     145     230 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.3e-06
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseea 34 
                 vav+G+G  G   a+++a+ag+ V+++++++++
  KIR60917.1 146 VAVVGSGPAGLAAAQQLARAGHAVTVYERDDAI 178
                 9***************************99876 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00012     0.074      30      62 ..     145     177 ..     134     206 .. 0.92
   2 ?    3.1   0.6     0.078        48      29      59 ..     293     324 ..     262     332 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrpa 62 
                   v v+G G aGl+A++  ++ g  Vtv++ + a
   KIR60917.1 145 SVAVVGSGPAGLAAAQQLARAGHAVTVYERDDA 177
                  599*************************98765 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.078
                  -EEEEESTSHHHHHHHHHHHHTT-E.EEEEES CS
  AlaDh_PNT_C  29 akvlviGgGvaGlqAiatakglgak.VtvlDv 59 
                   +v++iGgG      + +a++ ga  V  lD+
   KIR60917.1 293 KHVVIIGGGDTAADCLGVAHRQGAAgVHQLDL 324
                  479*****************999753666665 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   0.00035      0.21       1      37 [.     147     178 ..     147     186 .. 0.82
   2 ?    0.9   0.1      0.63   3.9e+02     113     155 ..     194     238 ..     189     239 .. 0.72
   3 ?   -2.9   0.0       9.4   5.8e+03     136     155 ..     255     274 ..     247     290 .. 0.74
   4 ?    5.8   0.1     0.021        13     104     154 ..     360     414 ..     357     416 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00035
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepg 37 
                    a+vG Gp+Gla++++L++       + +t+++++ + 
     KIR60917.1 147 AVVGSGPAGLAAAQQLARA-----GHAVTVYERDDAI 178
                    89***************99.....5889999996553 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.63
  NAD_binding_9 113 egvtvevhraevvdleeradgq..avlladgaslaadaVvLAlGh 155
                    +++++++ + e++ ++ r +      ++a++ + a daV LA+G 
     KIR60917.1 194 QHIDLRLAQLEAEGVRFRTGVHvgVDVTAEQLREAHDAVLLACGA 238
                    677888888888888888765422233566677899*******95 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 9.4
  NAD_binding_9 136 vlladgaslaadaVvLAlGh 155
                    v++a  + +aa++Vv A G+
     KIR60917.1 255 VHQAMAHLVAANRVVAAAGE 274
                    55555566778888888775 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.021
  NAD_binding_9 104 feellarlpegv..tvevhraevvdleeradgqavll...adgaslaadaVvLAlG 154
                    f+++++++ ++   +v+ +r   v +e+r+++ ++++    ++++l ad V LA+G
     KIR60917.1 360 FAAAVQEFVDDGtgQVRAVRIAEVTVEKRDGR-RIVTavpGSERELPADLVLLAIG 414
                    55556665443301344444333344444444.444423378899**********9 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011     0.069       2      42 ..     144     184 ..     143     188 .. 0.95
   2 ?   -1.8   0.0       1.2   7.7e+02     182     198 ..     291     307 ..     286     317 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
    FMO-like   2 kkvaviGaGvsGlasikccleegleptcfersddiGGlwrf 42 
                 + vav+G+G +Gla+ +     g   t +er d iGGl r+
  KIR60917.1 144 RSVAVVGSGPAGLAAAQQLARAGHAVTVYERDDAIGGLLRY 184
                 579***********************************997 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
    FMO-like 182 kgkrvlviGlGnsggdi 198
                  gk v++iG G++++d 
  KIR60917.1 291 AGKHVVIIGGGDTAADC 307
                 69************996 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0    0.0001     0.065       1      32 [.     145     176 ..     145     206 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.0001
                     -EEEE--SHHHHHHHHHHHTTT--EEEE-S-H CS
  NAD_Gly3P_dh_N   1 kiavlGaGswGtalAkvlaenghevrlwvree 32 
                     ++av+G+G  G a A+ la++gh v+++ r++
      KIR60917.1 145 SVAVVGSGPAGLAAAQQLARAGHAVTVYERDD 176
                     59**************************9987 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   0.00018      0.11       1      31 [.     146     176 ..     146     242 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00018
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr 31 
                 +a++G+G  G   a +La+ag+ vt++ r++
  KIR60917.1 146 VAVVGSGPAGLAAAQQLARAGHAVTVYERDD 176
                 69*************************9987 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.4   8.6e+02      94     115 ..     143     164 ..     140     178 .. 0.70
   2 ?   12.4   0.0   0.00016       0.1      22     107 ..     190     279 ..     182     284 .. 0.78
   3 ?   -2.7   0.1       7.4   4.6e+03      63      76 ..     294     307 ..     287     311 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.4
                 T-EEEEETTTHHHHHHTTTTTT CS
   DJ-1_PfpI  94 gklvaaICagpqlLaaagvlkg 115
                 g+ va ++ gp  Laaa+ l +
  KIR60917.1 143 GRSVAVVGSGPAGLAAAQQLAR 164
                 6788889999998888887753 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00016
                 HHHHTTEEEEEEESSTSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSH.....HHHHHHHHHHHTT-EEEEETTTHHHH CS
   DJ-1_PfpI  22 vlkragikvdvvsvdkeevkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlrene.....kvvelvkefaekgklvaaICagpqlL 107
                  l+++ i+++++++++e v+   G++v vd++ ++++ a +Da++l  G  +  +  e++      v + + + + ++++vaa + g   L
  KIR60917.1 190 KLEKQHIDLRLAQLEAEGVRFRTGVHVGVDVTAEQLREA-HDAVLLACGALQGRDTPETPgralrGVHQAMAHLVAANRVVAAAGEGRPAL 279
                 5788999***************************98887.999999987765555555444333356666667778999999988887665 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 7.4
                 SEEEE--BHHHHHH CS
   DJ-1_PfpI  63 DalvlpGGragper 76 
                  ++++ GG++ +++
  KIR60917.1 294 HVVIIGGGDTAADC 307
                 46777777776655 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00047      0.29       2      32 ..     146     176 ..     145     191 .. 0.92
   2 ?   -2.7   0.0       9.5   5.9e+03      33      64 ..     362     398 ..     359     402 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00047
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtk 32 
                    ++++G G  G   a++l++ag+ v+vy+r+ 
     KIR60917.1 146 VAVVGSGPAGLAAAQQLARAGHAVTVYERDD 176
                    89**************************985 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 9.5
                    HHHHHHHHTT...EEE-SSHHHHHHHC..SEEEE-SS CS
  NAD_binding_2  33 ekveelvaeg...akaaesieelvasl..dvvitmvk 64 
                    ++v+e+v++g   ++a+  +e  v++   + ++t v+
     KIR60917.1 362 AAVQEFVDDGtgqVRAVRIAEVTVEKRdgRRIVTAVP 398
                    5778888887665555554444555557777777776 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.073        45     190     218 ..     142     170 ..     105     177 .. 0.83
   2 ?    7.1   0.0    0.0043       2.7     188     215 ..     289     316 ..     263     335 .. 0.83
   3 ?   -3.7   0.0       8.3   5.1e+03     324     340 ..     399     415 ..     368     416 .. 0.54

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.073
  K_oxygenase 190 akkriaVvGsGqSaaeifedllrrqkkve 218
                  +++++aVvGsG  +   +++l+r  ++v+
   KIR60917.1 142 TGRSVAVVGSGPAGLAAAQQLARAGHAVT 170
                  6799*******999999999998877655 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0043
  K_oxygenase 188 llakkriaVvGsGqSaaeifedllrrqk 215
                  ++a+k+++++G+G +aa+ +  ++r+ +
   KIR60917.1 289 DAAGKHVVIIGGGDTAADCLGVAHRQGA 316
                  67899*************9888887744 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 8.3
  K_oxygenase 324 geeetlevdavvlATGY 340
                  g+e++l +d v+lA G+
   KIR60917.1 399 GSERELPADLVLLAIGF 415
                  34445555555555555 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   0.00011     0.065       2      30 ..     146     172 ..     145     179 .. 0.80
   2 ?   -1.9   0.0       2.1   1.3e+03       2      26 ..     295     320 ..     294     342 .. 0.66
   3 ?   -0.9   0.1         1   6.4e+02     102     153 ..     373     426 ..     358     433 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvli 30 
                    v+v+G+GpAgl+ A++l  a++g +v++ 
     KIR60917.1 146 VAVVGSGPAGLAAAQQL--ARAGHAVTVY 172
                    89***************..6666665554 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.1
  Lycopene_cycl   2 vvviGaG..pAgls.lAarlteakpglk 26 
                    vv+iG+G  +A ++ +A+r    ++g++
     KIR60917.1 295 VVIIGGGdtAADCLgVAHRQ--GAAGVH 320
                    89*****6556654388887..555555 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1
  Lycopene_cycl 102 vklleakvesveeeea.geslvvleggr..kirarlvvdarglaslkkarrlglQ 153
                     + +  ++++v+ e+  g++ v+   g   +++a lv+ a g +++++++ l+ Q
     KIR60917.1 373 GQVRAVRIAEVTVEKRdGRRIVTAVPGSerELPADLVLLAIG-FEGTEEQPLLAQ 426
                    344445777777666646665544333224999999999999.877766655555 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.5   0.00092      0.57       2      34 ..     146     175 ..     145     181 .. 0.89
   2 ?   -0.5   0.1      0.71   4.4e+02     171     212 ..     375     418 ..     351     426 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00092
                     EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase   2 ivivGGGtaGwlaAaalakalkgklevtlvese 34 
                     + +vG G+aG  aA  la+a+   ++vt+ e +
      KIR60917.1 146 VAVVGSGPAGLAAAQQLARAG---HAVTVYERD 175
                     89*******************...889998876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.71
                     EEE--EEEEEE-T.TS-..EEEEEETTS-EEE-SEEEE-SGGG-I CS
  Trp_halogenase 171 rvegkvvevqlde.dgr..veslrledgreveadlfiDcsGfrgl 212
                     ++  +++ev++++ dgr  v+++   ++re+ adl++ + Gf+g 
      KIR60917.1 375 VRAVRIAEVTVEKrDGRriVTAVPG-SERELPADLVLLAIGFEGT 418
                     3334455555554333222555554.7999*****9999999985 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.045        28      22      55 ..     142     175 ..     140     183 .. 0.91
   2 ?    4.6   0.1     0.051        32      17      48 ..     286     317 ..     279     326 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.045
                    TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S- CS
  AdoHcyase_NAD  22 aGkvavvaGyGdvGkGcaaslkglGarvivtevd 55 
                    +G+ + v+G G  G  +a+ l  +G  v+v e d
     KIR60917.1 142 TGRSVAVVGSGPAGLAAAQQLARAGHAVTVYERD 175
                    58999*************************9977 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.051
                    H-S--TTSEEEEE--SHHHHHHHHHHHHCT-E CS
  AdoHcyase_NAD  17 tdvllaGkvavvaGyGdvGkGcaaslkglGar 48 
                    t +  aGk +v++G Gd    c    + +Ga 
     KIR60917.1 286 TPIDAAGKHVVIIGGGDTAADCLGVAHRQGAA 317
                    556679**************999988888875 PP

>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.0    0.0016         1      38      63 ..     151     174 ..     141     272 .. 0.82
   2 ?    1.9   0.5      0.29   1.8e+02      26      55 ..     291     320 ..     246     343 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0016
      YjeF_N  38 nGgdglaaArhLaqegakVtvlllee 63 
                 +G  glaaA++La++g+ Vtv  +e+
  KIR60917.1 151 SGPAGLAAAQQLARAGHAVTV--YER 174
                 799******************..333 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.29
      YjeF_N  26 ekkvlvlvGsgnnGgdglaaArhLaqegak 55 
                 + k +v++G+g++ +d+l +A     +g++
  KIR60917.1 291 AGKHVVIIGGGDTAADCLGVAHRQGAAGVH 320
                 4455778999********999765444444 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1    0.0027       1.7       2      35 ..     146     175 ..     145     182 .. 0.90
   2 ?   -0.7   0.1       3.5   2.2e+03       2      22 ..     295     315 ..     294     325 .. 0.73
   3 ?   -2.1   0.0       9.9   6.1e+03      61      73 ..     405     417 ..     361     421 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0027
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESS CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrn 35 
                    ++++G+G  g a a++l++ag   h ++v  +r+
     KIR60917.1 146 VAVVGSGPAGLAAAQQLARAG---HAVTVY-ERD 175
                    89*******************...*99965.776 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 3.5
                    EEEETTSHHHHHHHHHHHHTT CS
  F420_oxidored   2 igiiGaGnmgealasgllaag 22 
                    + iiG+G+ ++  +  + ++g
     KIR60917.1 295 VVIIGGGDTAADCLGVAHRQG 315
                    689*****9986666555555 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 9.9
                    H-SEEEE-S-HHH CS
  F420_oxidored  61 eadvvvlavkped 73 
                     ad v+la+ +e 
     KIR60917.1 405 PADLVLLAIGFEG 417
                    3688888887765 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.2   0.00094      0.58       3      16 ..      45      60 ..      43      67 .. 0.88
   2 ?    0.6   1.2       1.8   1.1e+03       7      14 ..      97     105 ..      95     106 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00094
      Fer4_4  3 rCigCg..sCvaaCPq 16
                rC +Cg   C++ CP 
  KIR60917.1 45 RCMDCGipFCHDGCPL 60
                9*****777******6 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.8
      Fer4_4   7 Cgs.CvaaC 14 
                 C++ C+aaC
  KIR60917.1  97 CPApCEAAC 105
                 8988***** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.48
# Mc/sec: 3153.31
//
Query:       KIR60918.1  [L=517]
Description: peptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-25   90.3   1.3    2.2e-25   89.5   1.3    1.3  1  Peptidase_M1     Peptidase family M1 domain
      4e-09   36.9   0.0    7.1e-09   36.1   0.0    1.3  1  Peptidase_M1_N   Peptidase M1 N-terminal domain
  ------ inclusion threshold ------
       0.12   12.2   0.1       0.21   11.5   0.1    1.2  1  DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau do


Domain annotation for each model (and alignments):
>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   1.3   3.7e-29   2.2e-25      66     218 .]     331     475 ..     327     475 .. 0.88

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 3.7e-29
                   HHHHHHHHHHHHHHBTTTEEESSGGGGHHHHHHHHHHHHHHHHHHSCCCHCHHHHHHHCHHHHHHHHTSTTHHHSSGG-GSHHHHHHTSSHHHHHHH CS
  Peptidase_M1  66 svaeviaHElaHqWfGnlVtmkwWddlwLnEGfatyleylildklepewevseqllleeveealsedaldeshpitqevekpseidevFdsiaYeKG 162
                   s++ v++HE aHqWfG+ V+++ W+++wLnEGfa+y+e+l++++  +    +e++        + + +   + ++ q    +   ++vFd  +Y++G
    KIR60918.1 331 SNTYVVVHENAHQWFGDSVSVADWSQIWLNEGFASYAEWLWSEEQGE-GTAQEWF-------DFTYASYPADAEFWQVPPGNPGANNVFDGAVYDRG 419
                   5678**************************************99655.4445666.......556666666666666555566899*********** PP

                   HHHHHHHHHHCTHHHHHHHHHHHHHHCTTEEE-HHHHHHHHHHCCCSCHHTHHHHH CS
  Peptidase_M1 163 asllrmlekllgeevFqkglksYlkefkyknaetedlwdaleealnkdisevmdtw 218
                   a  l+ l+ ++g++ F + l ++ + ++++n + e++    e+ ++kd+++++ tw
    KIR60918.1 420 AMALHQLRLAVGDAAFFRILPAWTAAHRHGNGTIEQFQALAEQLSGKDLDALFTTW 475
                   ************************************9988888999********99 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.2e-12   7.1e-09       3     186 .]      67     238 ..      66     238 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.2e-12
                     EEEEEEEEEETTTTEEEEEEEEEEEESS-ECEEEEEESSEEEECEEEEECTTCTCEEEEEEEECTTTTCEEEEECCEEETTCEEEEEEEEEEE-. CS
  Peptidase_M1_N   3 ehYdldlkidlkektfkGsvtitlqlkeatseivldakdlkiksvslsaevksesvkidfkieqkdeelltiklkeslqqtskytLeieyegel. 96 
                     +hYd++l+  +++ +++G+ ti  +++++ s   ld   l +      ++vk ++ +++f   + ++e l+i+++++    +++t+ ++y g   
      KIR60918.1  67 DHYDVRLRYEPATDQLSGTTTILARATQDLSRFNLDFV-LGV------QSVKVDNYPATFA-REGAHE-LVITAPRPIVSGQSLTIVVQYAGVPs 152
                     69************************998888777653.444......7888888888866.334444.999*******************9445 PP

                     BSSSSEEEEEEEEETSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTSEEEESSECCCEEEETTCEE.EEEEEEEESBEGGG CS
  Peptidase_M1_N  97 ndklaGlykstYtdkgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkeetalSnmpeeeseklengqk.iteFeqtpkmstYL 186
                     ++   G    t  +   +   +    e+++A  + P  D Ps KAt+++s+ +p+   ++Sn+ + +    e g +  + + +  +  tYL
      KIR60918.1 153 QTRVDGWTGWT--K---TADGALAVNEPESAWWWYPSNDHPSDKATWDVSVSVPTGVEVVSNGVQPRPPLAEPGNRtRWGWRSATPGATYL 238
                     66666666533..3...233466778************************************97654444444443377777777777776 PP

>> DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   3.5e-05      0.21      51     118 ..     423     492 ..     413     495 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.5e-05
  DNA_pol3_gamma3  51 lrdLlellhqltllkvlpeaaedlslpeeererlkelaeklsleqLqrlWq..lllkgieevknapdpra 118
                      l++L   +   + +++lp+++++  + + + e+ ++lae+ls ++L  l+   l+ kg+ e+ +a  ++ 
       KIR60918.1 423 LHQLRLAVGDAAFFRILPAWTAAHRHGNGTIEQFQALAEQLSGKDLDALFTtwLFTKGRPELTQAASAAR 492
                      56666667777889999*9999999*************************844567******99987664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3738.82
//
Query:       KIR60919.1  [L=275]
Description: lipase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-24   87.4   0.4    2.1e-24   86.9   0.4    1.2  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
    6.6e-07   29.5   0.0    1.1e-06   28.8   0.0    1.4  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.4   2.3e-28   2.1e-24       1     179 []      49     264 ..      49     264 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 2.3e-28
                    EEESHHHHTCTTB.....CCHCHHCCCCCCCHHHTT-EEEEE.EEHCCH-H..HHHHHHHHCTGGG-TSEEEEE--CCCCCTT--HHHHHHH.... CS
  Lipase_GDSL_2   1 alGDSiTaGygad.....gggrsypaylarllaarlgldvvnnlgvsGattallrllerlrdllrlkpdlvtiliGtNDlgrgvpaaaaaand... 88 
                    alGDS++ G+ga      ++ rs+ +y a l+aa+ +++  ++ +++Ga t ++ ++++++ +l  +  lvti+iG+ND+g+ +  + ++      
     KIR60919.1  49 ALGDSYSSGVGAGpydlsTCLRSDKSY-APLWAAAHQVASFTFPACGGAVT-ADVINKQVN-ALSTSTTLVTITIGGNDAGFVDVITSCRFGStst 141
                    79*************************.********9999999******88.799999999.5666678**********99999999999888999 PP

                    ...................HHHHHHHHCCC...GEEE........CEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHHCT-EEE-HHHHHHHCC CS
  Lipase_GDSL_2  89 ..................nleelidalraaapgaril........vlgplpptpeaaadarelnaviaaynealrevaaeegvpfvDlhdaladsg 158
                                      +l++ ++a+r++ap+ar++         ++  ++   +a +++  n++++ ++ + +  aa+ g++f+D+++ +a++g
     KIR60919.1 142 cegavdeartfattelpgRLDRTYAAIREKAPNARLVvlgyprlfETTSCGALAMSAYKRTIINEAADLLASVTAGRAAAAGATFADARPYFAGHG 237
                    99999********************************99999987555555555555555558899999999999999****************** PP

                    CCCGGBBTTS.......SSB-HHHHHH CS
  Lipase_GDSL_2 159 erladlladdg......lHPnaaGyrl 179
                     + a  + +d        HPna+Gyrl
     KIR60919.1 238 VCAAAPWIRDVtgvieaYHPNADGYRL 264
                    *********99**************96 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   1.2e-10   1.1e-06       1     194 [.      47     263 ..      47     264 .. 0.62

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.2e-10
                  EEEEESHHHHTTTHHHHHHHCCCCEECCCTTC.GCEEEEEEECTTHHHHHHHCCH........ECTTTECHHHHHCTTSEEEEE--CTCC........ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
  Lipase_GDSL   1 ivafGDSltdGdgaatlntiqlktpknlnefdlaldrianignkgasdnelqqll........nkyplkseqlkalhpdlviislGtNDs........ 82 
                  +va+GDS + G+ga  ++ +   + +++           +++ ++a  +   ++          ++ +k+  + +    lv+i +G+ND         
   KIR60919.1  47 YVALGDSYSSGVGAGPYDLSTCLRSDKS-----------YAPLWAAAHQVASFTFpacggavtADVINKQVNALSTSTTLVTITIGGNDAgfvdvits 133
                  79**********7777776666664443...........3344555555555555555555555555555444445556******************* PP

                  ......-EECSSCTTTCEE.HHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCH.........CTCCCCHCCHHHHHHHHHHHHHHHHHHHH....H CS
                  ......xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
  Lipase_GDSL  83 ......nlgkkstdaakke.aeeyiknlreaikelkeegapkaivvlvsppglgp.........qeekdakklgekgnefvgeynqrlndlae....k 160
                          +    d+a +  ++e+  +l+ +   ++ e+ap+a  v++++p l++         +        +  +ne+++  +++     +     
   KIR60919.1 134 crfgstSTCEGAVDEARTFaTTELPGRLDRTYAAIR-EKAPNARLVVLGYPRLFEttscgalamS-----AYKRTIINEAADLLASVT----AgraaA 221
                  ***9985555555555544157999***********.888***************4444322211.....112222333333333333....144446 PP

                  CTEEEECHHHHHHHTHCCGCHCH...........TSSSB-HHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxx RF
  Lipase_GDSL 161 dgfavvDlydelqglsgieqlka...........DglHpsekgye 194
                  +g ++ D    + g  g +   a           +  Hp+  gy+
   KIR60919.1 222 AGATFADARPYFAGH-GVCA--AapwirdvtgviEAYHPNADGYR 263
                  666666666666666.2222..12356555555555577777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2038.39
//
Query:       KIR60920.1  [L=853]
Description: cell division protein FtsK [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-22   79.3   0.0    8.7e-21   74.4   0.0    2.8  3  FtsK_SpoIIIE   FtsK/SpoIIIE family
    1.4e-05   25.1   0.0    2.8e-05   24.1   0.0    1.4  1  TraG-D_C       TraM recognition site of TraD and TraG
    2.4e-05   23.5   0.0     0.0037   16.2   0.0    2.2  2  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
     0.0028   17.9   0.0     0.0082   16.4   0.0    1.7  1  AAA_22         AAA domain
     0.0097   14.9   0.0        0.7    8.7   0.0    2.1  2  AAA_10         AAA-like domain
  ------ inclusion threshold ------
      0.022   13.4   0.0       0.73    8.4   0.0    2.1  2  DUF853         Bacterial protein of unknown function (DUF853)
      0.069   13.2   0.3        2.7    8.0   0.0    2.3  2  DUF87          Helicase HerA, central domain
       0.24   10.6   0.1         45    3.2   0.0    3.0  3  Zeta_toxin     Zeta toxin
        0.3   11.4   2.4       0.39   11.0   0.1    2.5  2  zf-HC2         Putative zinc-finger
       0.31   10.2   0.0        2.2    7.4   0.0    1.9  2  DUF2075        Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.13   2.3e+02      55     112 ..     108     168 ..     106     178 .. 0.70
   2 !   74.4   0.0   4.8e-24   8.7e-21      28     187 ..     333     502 ..     310     508 .. 0.85
   3 ?   -1.8   0.0      0.88   1.6e+03      23      51 ..     626     655 ..     619     680 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.13
                   HHHHHHHHHHTT--TTTEEEEEE-TTSS..SCGGGTT-TTBSS..S-B-SHHHHHHHHHHH CS
  FtsK_SpoIIIE  55 alntLilSlatthtPeeVqliliDykgv..elsalediphlls.vavatdperalraleeL 112
                    l++ +l l++t+ P +V+   iD      ++  l  + + +   + at + +++++l+  
    KIR60920.1 108 LLRAVVLRLLATAPPGKVRVAGIDTVAFgaTFLPLRPLLDAGVlAPTATTAAEVAALLDSA 168
                   68999*******************7543356666666655444446666666666666655 PP

  == domain 2  score: 74.4 bits;  conditional E-value: 4.8e-24
                   S-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS.SCGGGTT.......-TTBSS.S-B-SHHHHHHHHHHHHHHH CS
  FtsK_SpoIIIE  28 gnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgv.elsaled.......iphllsvavatdperalraleeLvkem 116
                   ++p+++    +++h lvaG+tg GK+++l   + +la++++P+++ql l+D+k++  ++++         +ph   v + +d e+ l++l+eL  e+
    KIR60920.1 333 RQPVTVAFDDATPHWLVAGRTGAGKTVFLLDALYGLAARYAPDQLQLWLLDFKEGvSFTEFVPterdpswLPHARVVGIESDREYGLAVLRELRREL 429
                   4556555556666*****************************************9999988432233444888888********************* PP

                   HHHHHHHHHTT-SSHHH..HHHHHHHHHHTT---B-TT-.......................-----------B CS
  FtsK_SpoIIIE 117 eeryalfreagvrsiaa..ydgeiaedpldifgdvflvlDnyddlaaene.ritsLsnqgpsygvhvlvtagre 187
                   ++r+ +++ +gv ++a+  +d+ +++  ++ +++++l+  ++d++a +      +L+ +g sygvh+++++++ 
    KIR60920.1 430 NRRATVLKRHGVTKLADlpGDAAVPRIVAVVDEFQVLLA-GTDAVARQAVdLLEELARKGRSYGVHLVLASQST 502
                   ******************99**********999999997.888888777789***************9998765 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.88
                   EEETTS-EEEEEGGGS-..SEEEE--TTSS CS
  FtsK_SpoIIIE  23 gkeisgnplvldlkkma.shllvaGatgsG 51 
                    +++ ++p  + l   +  hl v+G++  G
    KIR60920.1 626 VVDVANSPASFTLDATPgRHLAVVGTSTVG 655
                   4566777777777777777******99877 PP

>> TraG-D_C  TraM recognition site of TraD and TraG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.6e-08   2.8e-05      16      64 ..     479     525 ..     456     536 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.6e-08
    TraG-D_C  16 pdleellstgrsrgislvlilQsiaqleelYgkegaetilgncdvklfl 64 
                 + leel  +grs+g++lvl+ Qs a +e+lYg   ae+i+g  + +++l
  KIR60920.1 479 DLLEELARKGRSYGVHLVLASQSTAGIESLYG--RAEAIFGQFPLRVAL 525
                 56899***************************..5999*9998888876 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0061        11      12      42 ..     341     371 ..     334     378 .. 0.83
   2 !   16.2   0.0   2.1e-06    0.0037     256     299 ..     476     517 ..     443     526 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0061
  TrwB_AAD_bind  12 eretqhilivGttGsGKtqalekllrairar 42 
                    ++ t h l++G tG+GKt+ l + l ++ ar
     KIR60920.1 341 DDATPHWLVAGRTGAGKTVFLLDALYGLAAR 371
                    56688**************999888776665 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.1e-06
  TrwB_AAD_bind 256 grleelksllaegRkfGgavvlglqsiaqlrevYGedaaqsils 299
                    ++++ l++l+ +gR++G+ +vl+ qs+a ++  YG+  a++i++
     KIR60920.1 476 QAVDLLEELARKGRSYGVHLVLASQSTAGIESLYGR--AEAIFG 517
                    67999******************************9..556665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.6e-06    0.0082       8     128 ..     347     498 ..     342     504 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.6e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee...........................erpevvfvtlpsstsskdllrellralglelkaerlsseell 79 
                  +v G +G+GKT+ l   l+ l +++++++                           ++++vv ++   +     +lrel r+l++++      +++ +
  KIR60920.1 347 WLVAGRTGAGKTVFLLDALYGLAARYAPDQlqlwlldfkegvsftefvpterdpswlPHARVVGIESDREY-GLAVLRELRRELNRRATV---LKRHGV 441
                 5899******************99999999*******9988888888888755555555555555555555.334445555555544444...566666 PP

      AAA_22  80 ealeqalrarav.ielliiDEaqhlr..s.......eealeeLrsllnlsrkgvqliLv 128
                 ++l++   ++av + + ++DE+q l   +        ++leeL +    +++gv+l+L+
  KIR60920.1 442 TKLADLPGDAAVpRIVAVVDEFQVLLagTdavarqaVDLLEELARKG--RSYGVHLVLA 498
                 6666666666669***********76673345534555555554444..5999999997 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.012        22      21      43 ..     344     366 ..     339     420 .. 0.71
   2 !    8.7   0.0   0.00039       0.7     256     286 ..     475     505 ..     454     522 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.012
      AAA_10  21 asasliiGdlGnGKSvlakllvl 43 
                  +++l+ G +G+GK v+   + +
  KIR60920.1 344 TPHWLVAGRTGAGKTVFLLDALY 366
                 68*************98755555 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00039
      AAA_10 256 aeGkkllkelvRiGRsynaavylvtqsadDv 286
                  +   ll+el R+GRsy   ++l++qs+  +
  KIR60920.1 475 RQAVDLLEELARKGRSYGVHLVLASQSTAGI 505
                 466789*********************9765 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00041      0.73       8      38 ..     331     361 ..     325     389 .. 0.82
   2 ?    2.8   0.0      0.02        35     252     304 ..     449     504 ..     442     523 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00041
      DUF853   8 eaeqelalalklanrhGliaGatGtGktvtL 38 
                    q++++a + a  h l+aG tG+Gktv L
  KIR60920.1 331 AGRQPVTVAFDDATPHWLVAGRTGAGKTVFL 361
                 56789999999*****************976 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.02
      DUF853 252 GdldkPklvfffdeahLLfndapka...llekveqvvrLirskGvGvyfvtqnPld 304
                 Gd+  P++v   de  +L+ ++ ++    ++ +e + r  rs Gv + + +q+ + 
  KIR60920.1 449 GDAAVPRIVAVVDEFQVLLAGTDAVarqAVDLLEELARKGRSYGVHLVLASQSTAG 504
                 9*****************98876651115677789999999999999999998765 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0015       2.7      10      39 ..     332     360 ..     324     362 .. 0.77
   2 ?    2.8   0.1     0.059   1.1e+02       3      32 ..     623     652 ..     621     655 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0015
       DUF87  10 sevpvyldlnklvtrHlAilgsTGsGKSnt 39 
                  + pv +  + + t H ++ g+TG+GK+ +
  KIR60920.1 332 GRQPVTVAFDDA-TPHWLVAGRTGAGKTVF 360
                 345777777666.9*************975 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.059
       DUF87   3 iGrllsgsevpvyldlnklvtrHlAilgsT 32 
                 +Gr+++  + p+++ l+    rHlA++g++
  KIR60920.1 623 VGRVVDVANSPASFTLDATPGRHLAVVGTS 652
                 8***************************85 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.031        55      20      33 ..     348     361 ..     339     377 .. 0.85
   2 ?   -0.5   0.0      0.34   6.2e+02      96     145 ..     463     513 ..     457     524 .. 0.78
   3 ?    3.2   0.0     0.025        45      17      36 ..     716     735 ..     707     768 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.031
  Zeta_toxin  20 llgGqpGAGKsela 33 
                 l++G +GAGK+  +
  KIR60920.1 348 LVAGRTGAGKTVFL 361
                 89*********755 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.34
  Zeta_toxin  96 yniivegtlrspdvvkklaealkkaGYevevvvvavkkelS.rlgvldRye 145
                 + +++ gt +   ++ +l e+l+ +G++  v++v +++ ++ +++++ R e
  KIR60920.1 463 FQVLLAGTDAVARQAVDLLEELARKGRSYGVHLVLASQSTAgIESLYGRAE 513
                 677888888888899999999999*****9999888776653667777765 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.025
  Zeta_toxin  17 klillgGqpGAGKselaell 36 
                 ++ l +Gqp+AG ++l    
  KIR60920.1 716 IAALAAGQPAAGRTYLVLFG 735
                 57788*********997554 PP

>> zf-HC2  Putative zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3       2.7   4.8e+03       4      25 ..     182     203 ..     181     204 .. 0.88
   2 ?   11.0   0.1   0.00022      0.39      12      29 ..     279     296 ..     277     296 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.7
                 HHHHHHHHHCCT-SCCCHCCCH CS
      zf-HC2   4 vrelLsaYlDGeLspeerarve 25 
                 +relL + +  +  p+e ar+ 
  KIR60920.1 182 ARELLVLVVAAAPGPRELARLA 203
                 7999999999999*****9985 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00022
                 HCCT-SCCCHCCCHHHHC CS
      zf-HC2  12 lDGeLspeerarveaHLa 29 
                 lDG+L+p++ a++ aHLa
  KIR60920.1 279 LDGDLPPATVAALAAHLA 296
                 8****************7 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0012       2.2       5      25 ..     348     368 ..     346     381 .. 0.85
   2 ?    0.1   0.0       0.2   3.7e+02     125     152 ..     455     486 ..     412     506 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0012
     DUF2075   5 lVtGvaGtGKtvvllnllael 25 
                 lV G++G+GKtv ll +l+ l
  KIR60920.1 348 LVAGRTGAGKTVFLLDALYGL 368
                 89*************999877 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.2
     DUF2075 125 vvvalvDegQelntgeigteee....lkklak 152
                  +va+vDe Q+l  g  +  ++    l++la+
  KIR60920.1 455 RIVAVVDEFQVLLAGTDAVARQavdlLEELAR 486
                 589********998886666664444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.48
# Mc/sec: 5394.76
//
Query:       KIR60921.1  [L=283]
Description: hypothetical protein TK50_24195 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.11   11.0   0.0       0.13   10.7   0.0    1.1  1  Herpes_UL25    Herpesvirus UL25 family
        1.3    8.9   9.5       0.93    9.4   0.4    2.4  2  DUF2721        Protein of unknown function (DUF2721)
        4.2    8.2  11.1        1.4    9.7   5.8    2.2  2  PSK_trans_fac  Rv0623-like transcription factor


Domain annotation for each model (and alignments):
>> Herpes_UL25  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.2e-05      0.13      31     118 ..      13     106 ..       2     133 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.2e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX.........XXXXXXXXXXXXXX-- CS
  Herpes_UL25  31 llreealeasreevevlevkkralraeLdnlaqkavalaeeierrlkevEellekiael.eaaaaaeeaaaar.........pplspssaspltavas 118
                   l  ++ e ++++  ++ +++ alra Ld+l ++ +a ++++++  +++   +e + ++ e++a+    +aa          p  sp   +p+ta a+
   KIR60921.1  13 QLADQRRE-TDRDAVAADRRRSALRATLDQLTRRLDAQSHRLDQLGRAAGVTVEPAPTAgERPASPAATPAAAagaglpgggPGGSP---EPGTAGAG 106
                  33334444.4888899999*********************99987777766666555556333332222222234556322344444...44444433 PP

>> DUF2721  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   3.2     0.014        85      22      60 ..       4      46 ..       1      53 [. 0.70
   2 ?    9.4   0.4   0.00016      0.93      62     116 ..     185     239 ..     154     241 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.014
     DUF2721 22 lariadrirqLedeleelaee....eeedeelakeiknlrrRa 60
                +a +a ++rqL d+++e++++    +++++ l++ +++l rR+
  KIR60921.1  4 FAEYAALARQLADQRRETDRDavaaDRRRSALRATLDQLTRRL 46
                78899999**998888666541111334566666699999997 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00016
     DUF2721  62 lirrailllvlsallvvlvvlllflsallsldlsllaailfvlalllllvslllf 116
                 l r+  + ++++a+ vvl+v+ll ++ +++   ++++a + +l +l+++++ l++
  KIR60921.1 185 LARALAVYAACAAAGVVLAVVLLGVAGVVASPGAVYVATCGALPVLCFVAGYLVL 239
                 566777888999999**********999999*****************9998875 PP

>> PSK_trans_fac  Rv0623-like transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.8   0.00024       1.4      11      56 ..       8      60 ..       5      81 .. 0.74
   2 ?    1.2   0.2      0.11   6.5e+02       9      25 ..     154     170 ..     152     174 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00024
                   XXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXX..XX--HHHHHHHHH CS
  PSK_trans_fac 11 erlareLarltgeskteAv.....rrAleerlerlrre..raepllerllall 56
                    +lar+La+ + e+  +Av     r Al+++l++l r+  +++++l++l + +
     KIR60921.1  8 AALARQLADQRRETDRDAVaadrrRSALRATLDQLTRRldAQSHRLDQLGRAA 60
                   58*****************5555557999999999887766666666665544 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.11
                    XXXXXXXXXXXXXXXXX CS
  PSK_trans_fac   9 everlareLarltgesk 25 
                    e++rla+e  rl g++ 
     KIR60921.1 154 EARRLADETDRLIGVTE 170
                    89999999999999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2137.24
//
Query:       KIR60922.1  [L=318]
Description: amino acid oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-39  136.5  18.6      3e-39  135.6  18.6    1.4  1  DAO             FAD dependent oxidoreductase
      3e-06   26.6   0.6    5.6e-06   25.7   0.6    1.5  1  FAD_binding_2   FAD binding domain
      3e-05   24.5   0.6    5.8e-05   23.6   0.6    1.4  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    7.7e-05   22.8   1.3    0.00022   21.4   0.5    2.2  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00015   21.1   1.2    0.00022   20.6   1.2    1.2  1  FAD_binding_3   FAD binding domain
    0.00059   20.2   1.8     0.0077   16.7   0.2    2.2  2  NAD_binding_7   Putative NAD(P)-binding
    0.00065   19.0   0.9     0.0013   18.0   0.9    1.5  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0045   16.1   0.1     0.0061   15.7   0.1    1.2  1  GIDA            Glucose inhibited division protein A
     0.0089   15.3   0.8      0.018   14.3   0.8    1.4  1  Thi4            Thi4 family
     0.0095   15.3   2.7      0.018   14.3   2.7    1.4  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.011   14.5   1.0      0.016   14.0   1.0    1.2  1  HI0933_like     HI0933-like protein
      0.027   13.8   4.2      0.047   13.0   4.2    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
      0.029   13.4   2.4      0.074   12.1   0.4    2.0  2  Lycopene_cycl   Lycopene cyclase protein
      0.088   12.4   0.1       0.13   11.9   0.1    1.2  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
      0.089   12.0   0.2       0.13   11.5   0.2    1.1  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.096   12.3   0.0       0.16   11.6   0.0    1.4  1  ApbA            Ketopantoate reductase PanE/ApbA
       0.16   10.8   0.7       0.22   10.3   0.7    1.1  1  Trp_halogenase  Tryptophan halogenase
       0.28   11.0   0.5       0.44   10.4   0.5    1.3  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6  18.6     3e-42     3e-39       1     352 []       6     314 ..       6     314 .. 0.81

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 3e-42
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeele 97 
                 dvv++GGGiiGl++A  L++rg  Vt+l ++ +++   S  +++++++ +   ++  +++r+++e+++el + ++  g++  + r++ + l +     +
  KIR60922.1   6 DVVVVGGGIIGLTAAVILQERGarVTVLAAD-DPADTVSTVAAAVWYPTHT-DEDP-RVLRWAAETHAELGRQAGA-GVPGVVARPTRMLLRHR---YQ 97 
                 9******************************.8888************986.4444.899**********666655.76544555555555432...33 PP

                 HHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEE CS
         DAO  98 aldkllallleagldaelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttpgendaadav 196
                 +   ++a+++  g d  l+ +      ep   ++++ l ++   +v+   ++ +la ++ a+G+++l++ +v++l e    +  v          a +v
  KIR60922.1  98 GP-PWWAAAT--G-D--LVAG----PAEP---PYTAVLRFTA-PTVEMTPYLGWLAGRVTAGGGRVLRH-RVRDLAE----AFDV----------APTV 167
                 33.4455422..2.2..4444....2344...7887777777.999***********************.****944....6777..........699* PP

                 EE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHHHH CS
         DAO 197 VnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtadeesgdddpevdeedidellealrk 294
                 Vna+G+ ++ l+      d+ ++pvrgq + ++++ ++++ +       + dd+++ +yv pr+ + v++Ggt+ +++ +d+  +d++ ++++++++ +
  KIR60922.1 168 VNATGLAAGrLA---A--DPAVHPVRGQLVLVANPGLTTSVR-------DEDDPAGITYVHPRRHD-VVLGGTY-QPGVWDT-GPDPQTAAAIRRRCVA 251
                 *******98555...3..4589**********8877755444.......4*************966.******8.5555555.**************** PP

                 HSGGG..CGEEEEEEEEEEETTSSEEEEEEE...TEEEEEEEEECTTTHHHHHHHHHHHHHHH CS
         DAO 295 lfPql..gdvlrkwaGlrplpdglpligetp...gvkglylatGhsghGltlapatGkllael 352
                 l+P+l  ++vl ++ Glrp ++g+p +  +p      +l++a+Gh+g G+tl+++++  +a l
  KIR60922.1 252 LVPELadAPVLGERIGLRPARHGGPRVAVEPagpAGGRLVHAYGHGGAGVTLSWGCAAEVARL 314
                 ****83355999*******9999999998667665559********************99975 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.6   5.7e-09   5.6e-06       1      41 [.       6      47 ..       6      76 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 5.7e-09
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS.GGGG- CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefgg.ataws 41
                   Dv+V+G+G+ GL+AA+ ++e+G++v+v+   ++    +t+++
     KIR60922.1  6 DVVVVGGGIIGLTAAVILQERGARVTVLAADDPADTvSTVAA 47
                   9****************************9999766333333 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.6   5.8e-08   5.8e-05       2      31 ..       7      36 ..       6      40 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 5.8e-08
                EEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvvers 31
                vvvvGgG igl +A +l+e g++Vtv+ + 
  KIR60922.1  7 VVVVGGGIIGLTAAVILQERGARVTVLAAD 36
                8*************************9765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.5   2.2e-07   0.00022       1      25 [.       9      33 ..       9      46 .. 0.93
   2 ?   -2.1   0.0       4.6   4.6e+03      32      54 ..     146     170 ..     143     180 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.2e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlll 25
                   +vG+G+ Gl+aA  L+++g++v++l
     KIR60922.1  9 VVGGGIIGLTAAVILQERGARVTVL 33
                   8***********************8 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.6
                    SGGG-EECETT..CEECTS---EEE CS
  NAD_binding_8  32 GGraasyevpg..vrvdygahifhg 54 
                    GGr+ + +v +   ++d+ +++++ 
     KIR60922.1 146 GGRVLRHRVRDlaEAFDVAPTVVNA 170
                    7888888887667788887777765 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   1.2   2.2e-07   0.00022       2      32 ..       5      35 ..       4      50 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.2e-07
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   +dV++VG+G  Gl++a +L+e+G rv+++  
     KIR60922.1  5 VDVVVVGGGIIGLTAAVILQERGARVTVLAA 35
                   89*************************9865 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   7.7e-06    0.0077       9      40 ..       6      37 ..       2      89 .. 0.80
   2 ?    2.8   0.1      0.15   1.5e+02      13      36 ..     144     168 ..     141     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.7e-06
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvapev 40
                    v+vvGgG ++++ +  l e ga+vtv+a + 
     KIR60922.1  6 DVVVVGGGIIGLTAAVILQERGARVTVLAADD 37
                   69**************************9993 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.15
  NAD_binding_7  13 vGgGevAarkvrklleag.akvtvv 36 
                    +GgG+v  ++vr l+ea     tvv
     KIR60922.1 144 AGGGRVLRHRVRDLAEAFdVAPTVV 168
                    7*************99621444554 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.9   1.3e-06    0.0013     144     174 ..       6      36 ..       2      51 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.3e-06
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlvear 174
                  ++vvvGgG iG+  A  l + g++vt++ a 
   KIR60922.1   6 DVVVVGGGIIGLTAAVILQERGARVTVLAAD 36 
                  7899999999999999999999999987764 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   6.1e-06    0.0061       1      36 [.       6      46 ..       6      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.1e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEEE.....ES-GGGTT CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi.....thkldtia 36
                dv+V+GgG  G+ AA+ + ++Ga+v+ +     +  ++t+a
  KIR60922.1  6 DVVVVGGGIIGLTAAVILQERGARVTVLaaddpADTVSTVA 46
                79***********************9986666555555555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.8   1.8e-05     0.018      18      47 ..       5      33 ..       2      37 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.8e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEE CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvail 47
                 Dvv+vG+G  GLtaa +l ++ + +v++l
  KIR60922.1  5 VDVVVVGGGIIGLTAAVILQER-GARVTVL 33
                6*******************99.9999887 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   2.7   1.8e-05     0.018      29      59 ..       5      35 ..       2      51 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.8e-05
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEES CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDv 59
                   v+v+GgG+ Gl A+ + ++ ga+Vtvl  
   KIR60922.1  5 VDVVVVGGGIIGLTAAVILQERGARVTVLAA 35
                 679************************9855 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.0   1.6e-05     0.016       2      30 ..       6      34 ..       5      40 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.6e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllle 30
                 dv+v+GgG  Gl aA+ +++rg+rV++l 
   KIR60922.1  6 DVVVVGGGIIGLTAAVILQERGARVTVLA 34
                 8*************************986 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   4.2   4.7e-05     0.047       1      29 [.       6      34 ..       6      39 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.7e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLve 29
                  DvvVvGGg+ G++AA+   ++Ga+v ++ 
    KIR60922.1  6 DVVVVGGGIIGLTAAVILQERGARVTVLA 34
                  9************************9875 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   7.4e-05     0.074       1      50 [.       6      56 ..       6      69 .. 0.82
   2 ?    0.9   0.1      0.18   1.8e+02     132     168 ..     164     198 ..     160     204 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.4e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpnny.vWsdefed 50
                   Dvvv+G+G  gl  A  l e  +++ v+  + +++ + +    vW    +d
     KIR60922.1  6 DVVVVGGGIIGLTAAVILQERGARVTVLAADDPADTVSTVAAaVWYPTHTD 56
                   9*****************888888888888888888888777799766655 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.18
  Lycopene_cycl 132 arlvvdarglaslkkarrlglQtfyGvevevdnppfd 168
                    a++vv a+gla+++ a +  +   +G++v v+np  +
     KIR60922.1 164 APTVVNATGLAAGRLAADPAVHPVRGQLVLVANP--G 198
                    789**************************99998..4 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00013      0.13       3      32 ..       7      36 ..       5      61 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
                    EEEE--STTHHHHHHHHHHCTSEEEEE-S- CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvDid 32
                    ++v+G G +Gl+ a++l e+g  v+++  d
      KIR60922.1  7 VVVVGGGIIGLTAAVILQERGARVTVLAAD 36
                    89*******************888776444 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00013      0.13     167     198 ..       7      38 ..       2      55 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
  Pyr_redox_3 167 vvViGgknSavDaAlelvrkgaeVtvvtrgse 198
                  vvV+Gg+  +  aA+ l ++ga+Vtv+  +++
   KIR60922.1   7 VVVVGGGIIGLTAAVILQERGARVTVLAADDP 38 
                  55666666666666666666666665555554 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00016      0.16       1      35 [.       7      41 ..       7      59 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00016
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsrrlea 35
                ++++G G iG + a+ L++ ga vt+++ ++ +++
  KIR60922.1  7 VVVVGGGIIGLTAAVILQERGARVTVLAADDPADT 41
                689***********************998876655 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.7   0.00022      0.22       1      33 [.       6      35 ..       6      42 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00022
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlves 33
                    ++v+vGGG+ G +aA +l++ +   ++vt++ +
      KIR60922.1  6 DVVVVGGGIIGLTAAVILQERG---ARVTVLAA 35
                    69*****************999...77888765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   0.00044      0.44       2      32 ..       7      37 ..       6      55 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00044
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdise 32
                v v+G G++G   a ++ ++g +V+++  ++
  KIR60922.1  7 VVVVGGGIIGLTAAVILQERGARVTVLAADD 37
                89***********************998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2516.30
//
Query:       KIR60923.1  [L=294]
Description: LysR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-30  106.5  10.8    1.2e-30  106.5  10.8    1.4  2  LysR_substrate  LysR substrate binding domain
    1.6e-23   82.4   2.3    3.4e-23   81.3   2.3    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.022   14.5   0.2      0.056   13.2   0.2    1.7  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1      0.55   3.3e+03      35      37 ..      36      38 ..       9      71 .. 0.54
   2 !  106.5  10.8     2e-34   1.2e-30       2     204 ..      91     293 ..      90     294 .] 0.97

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.55
                    EEE CS
  LysR_substrate 35 vel 37
                    ++ 
      KIR60923.1 36 LSQ 38
                    221 PP

  == domain 2  score: 106.5 bits;  conditional E-value: 2e-34
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gep 95 
                     +g +grLr++ + ++    +  l+arfra++P+ve+  ++++++  +++l++g+lD+a+++ p +++ l +r + +e+l+l+++++hpLa  +++
      KIR60923.1  91 QGRGGRLRLAYTRSARGGPVDALVARFRAAHPDVEVVAETAWTAPNVAGLLAGRLDAAFVRPPVDEPALACRTVDTEELLLALPAGHPLATgRRR 185
                     6889***************************************************************************************9999 PP

                     ECGGGGCTSEEEEESTTST...HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEE CS
  LysR_substrate  96 vsledLadeplilleegsg...lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvy 187
                     ++ +++ d+p +++++++g   + +++ ++  + g+++ +  +  + e ll++va+G+ ia +p+  + ++l+ ++++ + +  p+++ +++l++
      KIR60923.1 186 ITRAEVVDLPAVMWSRDNGpgmFDRTIAQVWPRGGFRLVR--QEPDDEQLLRAVAQGDVIAAVPAGRA-RALKVPGVRLRRFTSPTPTVDVGLAW 277
                     9*************9999999*99************9987..88999********************9.66*************9999******* PP

                     ETTCCCHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidfl 204
                     +++   +pav a++++l
      KIR60923.1 278 PRDT-TNPAVHALVALL 293
                     ***9.********9987 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   2.3   5.7e-27   3.4e-23       1      60 []       7      66 ..       7      66 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 5.7e-27
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lr+lr+f  +aee +ftrAA +L+++qpa+s+qi++LE++lgvpL++Rt+rg +LTe G+
  KIR60923.1  7 LRRLRYFAVLAEELHFTRAAARLHIAQPALSQQIRALERQLGVPLVHRTSRGCTLTEVGR 66
                79*******************************************************996 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   9.4e-06     0.056       8      44 ..      15      51 ..      13      61 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.4e-06
                HHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30  8 ylenggnisatAkaLhvHrnTlryRLrrieellgldl 44
                 l++    +++A++Lh+    l++ +r +e+ lg++l
  KIR60923.1 15 VLAEELHFTRAAARLHIAQPALSQQIRALERQLGVPL 51
                677888899*************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2214.78
//
Query:       KIR60924.1  [L=189]
Description: hypothetical protein TK50_24215 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1399.91
//
Query:       KIR60925.1  [L=1163]
Description: hypothetical protein TK50_24220 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-40  136.8   0.3    1.2e-38  132.8   0.0    2.9  4  EcoEI_R_C   EcoEI R protein C-terminal
      3e-34  118.5   0.0    4.5e-34  117.9   0.0    1.3  1  ResIII      Type III restriction enzyme, res subunit
      5e-21   75.4   0.0    9.2e-21   74.5   0.0    1.4  1  SWI2_SNF2   SWI2/SNF2 ATPase
      7e-06   26.1   0.0    0.00064   19.7   0.0    2.5  2  HSDR_N      Type I restriction enzyme R protein N terminus (H
    8.8e-06   26.0   0.0    1.9e-05   25.0   0.0    1.5  1  Helicase_C  Helicase conserved C-terminal domain
    4.4e-05   23.5   0.0    0.00011   22.2   0.0    1.7  1  DUF4145     Domain of unknown function (DUF4145)
      9e-05   22.3   0.0    0.00032   20.5   0.0    1.8  1  DEAD        DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.063   13.2   2.4       0.25   11.3   2.4    2.0  1  LcrG        LcrG protein


Domain annotation for each model (and alignments):
>> EcoEI_R_C  EcoEI R protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       4.1   9.2e+03      81      99 ..     209     227 ..     203     260 .. 0.69
   2 ?   -2.6   0.0       2.4   5.3e+03      84     130 ..     653     698 ..     649     708 .. 0.69
   3 ?   -0.1   0.0       0.4     9e+02      10      41 ..     869     902 ..     839     909 .. 0.89
   4 !  132.8   0.0   5.5e-42   1.2e-38       4     168 ..     990    1161 ..     988    1162 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.1
   EcoEI_R_C  81 gldeeletrserverafkr 99 
                  l e le+  e++++af+ 
  KIR60925.1 209 ALLESLEPAVEAAQQAFDS 227
                 3345677777777777765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.4
   EcoEI_R_C  84 eeletrserverafkrwikekkfteeqrewLelildhiaangviel..d 130
                 ++l+ r+ r+er  + +    +ft + r++ + ++ + + + v+e   d
  KIR60925.1 653 VPLRDRRTRAERYQELED---DFTYDGRQVGRSVIAKGQLKLVLETfrD 698
                 677888888888887754...8887777777777777777777665545 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.4
   EcoEI_R_C  10 fieenkdsidaLqiiws..dreltkellkeLeek 41 
                 ++  n d+++ L    s  dr+lt +++ eL+e 
  KIR60925.1 869 TLTANPDEVATLAARLSrlDRQLTDDERAELAEL 902
                 5677889999999999999999***999999986 PP

  == domain 4  score: 132.8 bits;  conditional E-value: 5.5e-42
   EcoEI_R_C    4 vekfrkfieenkdsidaLqiiws.dreltkellkeLeekLkepppgitpealweayellek.kv..spq.ltdlidlirkiagldeeletrserver 95  
                  v+++ +++e+++d+i+aLq ++  +  +++ +lkeL+ ++ +pp+ +tpe lw+ay ll + ++   p+ +tdl+ lir+ +gld+el++++  +e+
  KIR60925.1  990 VRSWHDYLEQHRDEITALQVFYEgKGRISYGQLKELATRIARPPQAWTPESLWKAYVLLGRtSEqpGPRgVTDLVALIRYELGLDQELRPYRTSIEE 1086
                  78999******************6666********************************8866655555**************************** PP

   EcoEI_R_C   96 afkrwikek.....kfteeqrewLelildhiaangvielddldeapefkqkgglgkayklFGgkqeldeileelneel 168 
                  +f  w+ ++     +ft++q  wLe+i+d ia ++ i+ ddl++ap f+++gg+   +++FG+  + + +l+eln el
  KIR60925.1 1087 RFRGWLLRQqqagaTFTADQVWWLERIKDVIAVSVEITADDLEGAP-FTERGGIDGYANAFGD--RAEPLLDELNGEL 1161
                  ******99899***********************************.****************..**********987 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   0.0     2e-37   4.5e-34       2     169 ..     415     601 ..     414     603 .. 0.94

  Alignments for each domain:
  == domain 1  score: 117.9 bits;  conditional E-value: 2e-37
                 -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--... CS
      ResIII   2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke.igkkvsgdkkkakek 99 
                 l lr+ Q +a++ l+ +l  +++ r+li+maTG+GKT++a+ + +rllk+++ +++lflv+r++l +qtl+e++ ++ +++ +  ++ +  d+ +  ++
  KIR60925.1 415 LGLRPAQVDAVDGLERSLA-EDRPRALIQMATGAGKTFTAVTASYRLLKHARARRILFLVDRNNLGKQTLREYAAYQTPDDGRkFTELYAVDRLSG-AG 511
                 579***************9.9999****************************************************99987667778888888888.99 PP

                 ....-SEEEEEHHHHHHTH..............................HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---SEEEEEESS- CS
      ResIII 100 dstnkkilvttiqsldadseee......................eeeseellrdrfdviiiDEaHrlgakkswreilekfkeavllglTATp 169
                   ++++++++tiq+l+ +++ +                        ++ +l +++fd+i++DE+Hr+ +  +wr+++e+f+ a+++glTATp
  KIR60925.1 512 MLDSSNVVISTIQRLYGALRGDelpdvdvddraydsydldapaeVGYNPHLPPETFDLIVVDECHRSIY-GKWRAVIEYFD-AFVVGLTATP 601
                 999****************999*******************998889999999****************.**********9.9********9 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   4.1e-24   9.2e-21       2     190 ..     421     631 ..     420     643 .. 0.79

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 4.1e-24
   SWI2_SNF2   2 QyravekavervkegdrkgGviWHtqGSGKsltmvflakklleeelknpkvvvvtDRkdLdkQlsktfakageekpk....qaesrkeLkellekesek 96 
                 Q+ av  + +++ e dr   +i   +G+GK++t v+++ +ll+ + +  ++++++DR++L kQ+ +++a+ ++ +      +    ++L      +s++
  KIR60925.1 421 QVDAVDGLERSLAE-DRPRALIQMATGAGKTFTAVTASYRLLK-HARARRILFLVDRNNLGKQTLREYAAYQTPDDGrkftELYAVDRLSGAGMLDSSN 517
                 56666655555554.799999**********************.99***********************9865554300003334444444334579** PP

   SWI2_SNF2  97 iifttiqKfe...eeek........................eklevlsereniivlvDEaHRsqygelakklrkalpnaafigFTGTPilkkdkktkev 168
                 ++++tiq++    +                              ++l  ++  +++vDE+HRs yg+ ++ ++ +  +a ++g+T TP++    +t   
  KIR60925.1 518 VVISTIQRLYgalR--GdelpdvdvddraydsydldapaevGYNPHLPPETFDLIVVDECHRSIYGKWRAVIEYF--DAFVVGLTATPVK----QTLGF 608
                 *********85542..1346778889999999999999765334777777777999************9999765..899*********7....79*** PP

   SWI2_SNF2 169 Fg.eyidkYtikeaveDgavvpi 190
                 Fg +++++Yt ++av+Dg+ v+ 
  KIR60925.1 609 FGqNLVSEYTYEQAVADGVNVDF 631
                 *956899***********98874 PP

>> HSDR_N  Type I restriction enzyme R protein N terminus (HSDR_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.021        47       2      30 ..     253     280 ..     252     294 .. 0.78
   2 !   19.7   0.0   2.8e-07   0.00064     120     187 ..     295     366 ..     287     373 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.021
                 SSHHHHHH.HHHHHHHHTT-EE....... CS
      HSDR_N   2 lsEaeleqelidellrelGyqvlskkdve 30 
                 l+E +++   id +l ++G++v++++  +
  KIR60925.1 253 LNEVQTRA-EIDRQLAAAGWSVQNENHLN 280
                 67888888.8************9988655 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 2.8e-07
                 S---EEEEEEETTEEEEEEEE--TT-HHHHHH.HHTSS---.---SSSGGGGG-..................-EEEEE-SS-EEEEE CS
      HSDR_N 120 qkrrpDivlfvnglplvviElKrpgtieeAin.QikryrkeksdvsipqlfrYl..................qfgvisngketrfya 187
                  + r+D++l+v+   + viE+Kr+gt  ++++ Q++ry               l                  +fg++  g+et f++
  KIR60925.1 295 ATGRADYLLYVDQRLVGVIEAKREGTAPRGVEaQLDRY---------------LtgltpeqqfsawrrdaplPFGYVATGTETTFVN 366
                 5679*******************876455554456666...............4444444444455699999999999999999876 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   8.4e-09   1.9e-05      14     109 ..     709     811 ..     697     812 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 8.4e-09
                 TTTSEEEEEESSHHHHHH....HHHH..HHHT..TSTEEEESTTSTHHHHHHHHHHHH.TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHH CS
  Helicase_C  14 eeggkilifvntidrlek....vkll..lekk..gikvavlhgelpqnereeileqfn.kgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqr 103
                 +   k+lif++  +++e+    v+++  +       k +++ ++   ++ ++ +++f+ + e +v ++ d++++G d++ +++V+++ + r+ t + q+
  KIR60925.1 709 STVPKTLIFARDDNHAEEivamVRVVfgR--GndFAKKITYSSRRDGDNPDALIQAFRnSPELRVAVTVDMIATGTDVKPLECVFFLRPVRSATYFEQM 805
                 56679999999999888764443333442..13335556889999************9678888*********************************** PP

                 HTTSSS CS
  Helicase_C 104 iGRtgR 109
                 +GR +R
  KIR60925.1 806 KGRGAR 811
                 ***999 PP

>> DUF4145  Domain of unknown function (DUF4145)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   4.9e-08   0.00011       3      83 ..      32     116 ..      31     121 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 4.9e-08
     DUF4145   3 aekllnaspkasavliRraLEkllkdkgiakgk......dLknkiealvekgvipeklkelldairviGNdgaHelkditkedaedl 83 
                 ae l+ ++++++++++R+  + l +d+  ++ +      ++ ++++al  +g+++ k+  + d++r+ GN+++H+    +  +a++l
  KIR60925.1  32 AELLVYVDAQSAMFKARAFGDVLARDLV-RRTQvapvkdSFFHQVQALHTAGALTTKVYAAFDRLRDTGNRAVHD-HLGEVREALEL 116
                 56677789999************99999.55555777778**********************************9.44444555555 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.4e-07   0.00032      16     143 ..     438     588 ..     428     606 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.4e-07
                 EEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHHH.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
        DEAD  16 dvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrlddll.. 112
                   l++++TG+GKT  ++ + ++ +   k+ ++ ++l+++    L +qtl+++  +  + d r    +  v++ +    l  + ++v++t +rl   l  
  KIR60925.1 438 RALIQMATGAGKTFTAVTASYRLL---KHARARRILFLVDRNNLGKQTLREYAAYQTPDDGRKFTELYAVDRLSGAGML-DSSNVVISTIQRLYGALrg 532
                 5799****************9888...689999***********************98775555566667777888888.8899999999999998878 PP

                 .........................HCTSSHCTTEEEEEEETHHHHHHTTTHHHHH CS
                 .........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 113 .........................stgklnlsqvrflVlDEadrlldqgfsdfin 143
                                           + +l  + + ++V+DE++r    + +  i+
  KIR60925.1 533 delpdvdvddraydsydldapaevgYNPHLPPETFDLIVVDECHRSIYGKWRAVIE 588
                 88888888888888888888876665566778899999999999988776666655 PP

>> LcrG  LcrG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00011      0.25       7      72 ..     188     251 ..     184     262 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
        LcrG   7 ktlkaaelairdsdeRakllqelleglGlapeageklfggleaelvkaaeqeLleevkRrRsrqpq 72 
                 ++  aae a+rd+d R    + lle+l  a ea+++ f + +   v aa +e +  + R R+  ++
  KIR60925.1 188 AAASAAEQAVRDADARRPQAAALLESLEPAVEAAQQAFDSAKPAKVSAAKREDF--ISRARRASHE 251
                 56689*********************************************9955..4454444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.47
# Mc/sec: 7415.40
//
Query:       KIR60926.1  [L=499]
Description: DNA methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-63  214.3   0.0    3.4e-63  213.8   0.0    1.2  1  N6_Mtase   N-6 DNA Methylase
    4.8e-15   56.4   0.1    1.5e-14   54.8   0.1    1.9  1  HsdM_N     HsdM N-terminal domain
    1.1e-05   25.2   0.6    0.00011   21.9   0.6    2.2  1  UPF0020    Putative RNA methylase family UPF0020
    0.00048   20.5   0.0     0.0009   19.6   0.0    1.3  1  RGS12_us2  Unstructured region between RBD and GoLoco


Domain annotation for each model (and alignments):
>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.8   0.0   7.6e-67   3.4e-63       4     279 ..     128     420 ..     125     454 .. 0.87

  Alignments for each domain:
  == domain 1  score: 213.8 bits;  conditional E-value: 7.6e-67
    N6_Mtase   4 dllGdvYEyllrkfaeeegksgGeffTPrevsklivellepksgesvyDpacGsggllvqaekvlkee.........dgktkelsiyGqeknettyrLa 93 
                 d+ Gd+YE ll k ae +++ +G++fTPr+++  +v+ + p ++ ++ DpacG+gg+l+ a ++++++              +  i G e+ + t+rLa
  KIR60926.1 128 DVKGDAYEELLAKGAEDAKSGAGQYFTPRALTAAMVDCMLPTPDDTITDPACGTGGFLLAAFDHIQRHhgssltpdqRRRLANGAITGTELVDGTARLA 226
                 889****************************************************************99999998755556677899************ PP

    N6_Mtase  94 kmNlllhgieykkvk..irlgdtlekpkfekdkkfdvvvaNppfnqkew........kektlekder.frea..vapksnadlafllhiieslkpkGra 179
                  m +llhgi + +    i+ +d+l ++ ++   ++  v+aNppf+ +          k     ++er  + a   a + n++l f++hi + l+ +Gra
  KIR60926.1 227 AMSMLLHGIGTPNGPslITVADALGREPSQ---RVSLVLANPPFGRSSSirmvgeggK---ASREEReIERAdfWATTANKQLNFVQHIASLLEIDGRA 319
                 *********999754679******999888...9***********9977899996432...3333320233356999********************** PP

    N6_Mtase 180 avvlangvLfrggkegkIrkalvekdlveavialpeklFyntsiptcilvlkkekae...rkgkvlfidaseefkkkdrkknklteediekildtykek 275
                 avvl+++vLf+gg+++ Ir++l+++  ++++++lp+++Fy+ ++++++l++++++a+    ++k +++d +++ + +  k+n+l+ e+++ ++d+y   
  KIR60926.1 320 AVVLPDNVLFEGGAGEVIRRRLLNQYDLHTMLRLPTGIFYAGGVKANVLFFERKRAReqpWTEKLWVYDFRTNQHFT-LKQNPLRREHLQDFVDCYLPG 417
                 *******************************************************9888999***********9999.8*****************876 PP

    N6_Mtase 276 skev 279
                  k+ 
  KIR60926.1 418 -KDR 420
                 .333 PP

>> HsdM_N  HsdM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.1   3.3e-18   1.5e-14       1     134 [.       9     113 ..       9     116 .. 0.89

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 3.3e-18
                 HHHHHHHHHHHHHHS.-SHHHHHHHHHHHHHHHHHHHHHHHHHHCC.......--..--------....S-CCCSHHHHHHS--HHHHHHHHHHCHHHH CS
      HsdM_N   1 lesklwkaadiLRgk.vdaseykeyilgLlFlKrlddveeereeklleeykenaleeleeklkskeafyipeelrWkelakkkdddelgenlnkafpal 98 
                 l +klw+ +d LR++ v   +y+e++++LlFlK+ d++ +++ +         +               +p+el+W+ l +  ++d+l+ +++ ++ +l
  KIR60926.1   9 LVQKLWNYCDVLRDDgVSTIDYVEQLTYLLFLKMADERANRKLRPE-------Q--------------IVPSELSWQTLLDA-EGDALEVQYRHILTGL 85 
                 689**********9999*********************98886666.......2..............48***********8.9999************ PP

                 CT--STHHHHHHHS......S-----SSHHHHHHHH CS
      HsdM_N  99 eelnkslkgvfmkddfnafalgeitkkspalLskvi 134
                 +++   + g+++++     a+++i  ++pa+L+++i
  KIR60926.1  86 AREG-GTLGTIFRK-----AQNKI--QDPAKLKRLI 113
                 ***7.455555557.....99999..********99 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.6   2.6e-08   0.00011      15     134 ..     157     270 ..     155     276 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.6e-08
                 HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--...EEEEES-HHHHHHHHHHHHHTT-...GGGEEE CS
     UPF0020  15 tLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelk...lygsDldrrvvqgareNaekagv...gdlief 107
                 +L aa+v     +p++++ DP CG+G++l+ aa    ++ +g            +  ++r++l    + g +l     + a       g+   ++   +
  KIR60926.1 157 ALTAAMVDCMLPTPDDTITDPACGTGGFLL-AAFDHIQRHHGSS----------LTPDQRRRLAngaITGTELVDGTARLAAMSMLLHGIgtpNGPSLI 244
                 5899*************************9.6776666665554..........222222111112355555555444444444444444000555666 PP

                 EE--GGG--STTS---EEEE------- CS
     UPF0020 108 sqadaakLrlkegevdvivtnpPYGer 134
                  +ada   + +++ v ++++npP+G++
  KIR60926.1 245 TVADALGRE-PSQRVSLVLANPPFGRS 270
                 666666555.88889999999999986 PP

>> RGS12_us2  Unstructured region between RBD and GoLoco
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     2e-07    0.0009      34      66 ..     266     298 ..     259     303 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2e-07
   RGS12_us2  34 plgKSsSikikgEnGKnsrdarllkreesvaki 66 
                 p g+SsSi++ gE GK+sr+ r  +r +  a +
  KIR60926.1 266 PFGRSSSIRMVGEGGKASREEREIERADFWATT 298
                 89********************99988766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3321.26
//
Query:       KIR60927.1  [L=412]
Description: hypothetical protein TK50_24235 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.3    9.5   6.9        8.6    6.9   0.1    3.5  3  DinB_2    DinB superfamily


Domain annotation for each model (and alignments):
>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1   0.00048       8.6      64      98 ..     133     167 ..     103     182 .. 0.82
   2 ?    3.0   0.8    0.0078   1.4e+02      65      88 ..     218     249 ..     175     278 .. 0.67
   3 ?    1.0   0.1     0.032   5.7e+02      67     101 ..     283     316 ..     257     326 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00048
      DinB_2  64 tppsaaealaylaevrarllallealtdadldrpl 98 
                 ++++++e+ +yla+  + + ++l+a +da l+r +
  KIR60927.1 133 MQQTMEEITDYLARIEEKVDDVLRAQKDAVLARMI 167
                 459*************************9888765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0078
      DinB_2  65 p........psaaealaylaevrarllallea 88 
                 +        +++a+a+++ +++ +++la+l++
  KIR60927.1 218 EklerktaiGDLAKAAKEVESTAREWLAVLAR 249
                 12333333578888888888888888888876 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.032
      DinB_2  67 saaealaylaevrarllallealtdadldrpltap 101
                 ++++ la ++++ +rl+a l+a++  ++++ + ++
  KIR60927.1 283 AREDRLALISRCTERLMARLDAAAG-RANTKVLMH 316
                 4556667777777777777777444.555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 2879.45
//
Query:       KIR60928.1  [L=277]
Description: hypothetical protein TK50_24240 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-77  259.6   0.6    3.8e-77  259.4   0.6    1.0  1  Methyltransf_19  S-adenosyl methyltransferase
  ------ inclusion threshold ------
      0.094   12.5   0.0       0.15   11.9   0.0    1.4  1  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_19  S-adenosyl methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.4   0.6   4.2e-81   3.8e-77       9     267 ..      14     275 ..       7     276 .. 0.93

  Alignments for each domain:
  == domain 1  score: 259.4 bits;  conditional E-value: 4.2e-81
  Methyltransf_19   9 dtsrphsaRvydylLGGkdnypvDreaaeallkalpelvkvaranRaflrRavrvlaeeaGirqflDiGtGlPtednvHqvaqrvaPesRvvYv 102
                      d +++++aR+ydy+LGG  n+++Dr+ ae+++ +lp++   ar nR++lrR+vr l+++ G++qf+Di +GlPt++n+H+va++  P +Rv+Yv
       KIR60928.1  14 DVENANIARIYDYYLGGLYNFAIDRQKAERIKLTLPSVDLLARGNRDWLRRSVRYLVAQ-GVEQFIDIAAGLPTANNTHEVAHALNPRARVIYV 106
                      8899******************************************************9.********************************** PP

  Methyltransf_19 103 DnDPivlaharallestpeGatdyieaDlrdpeeilespearevlDldrPvAlllvailhfveDeedaaaivrelvdalpaGsllvlshltedl 196
                      DnDP ++ h++ +l+++p    ++ eaD r+pe++ ++p++r+++Dl++Pv ++l  +l fv+De+d++++v+ ++dal++Gs+l++shlt+d+
       KIR60928.1 107 DNDPSAVIHGEEILAKEPL--VAMAEADGRHPEQVWAHPAIRDLIDLSQPVGIILGGLLVFVPDEDDPKGLVAAYRDALAPGSYLAISHLTADT 198
                      ******************9..99**********************************************************************9 PP

  Methyltransf_19 197 npeev.....ekvekvykeaaaplrlRsrkeverffdglelvePGlvevteWrpdeeae.eeeteeeisvyagvark 267
                       ++e+     + v+++ +  +a+l++R ++ ++++f+g+elv+PG++ +++Wrpd     +++t+++   y++++r+
       KIR60928.1 199 VDAETrgqvdRMVAAYQAGVGATLHVRDKATFASWFEGMELVDPGVTLMADWRPDPGLDlDAQTPSRQLGYGAMGRI 275
                      8776633332333344444599*********************************876547899999999**99986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.6e-05      0.15       6     127 ..      76     212 ..      72     243 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.6e-05
  Methyltransf_31   6 rvlDlGCG..tGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklled.ekfDl........ilsnevl...n 85 
                      +++D+++G  t + t+e a+ l+p+a+v+ +D+++ a+ + +e+++k  l  v + ++d  + e+ ++  +  Dl        i+  ++l    
       KIR60928.1  76 QFIDIAAGlpTANNTHEVAHALNPRARVIYVDNDPSAVIHGEEILAKEPL--VAMAEADGRHPEQVWAHpAIRDLidlsqpvgIILGGLLvfvP 167
                      567888877788899******************************99999..788888888855554444555552224444444445555655 PP

  Methyltransf_31  86 aladpdkileeiervlkpggilliedpr...llaelpakveeesk 127
                      +  dp+       ++l pg++l+i++     + ae +++v ++  
       KIR60928.1 168 DEDDPKGLVAAYRDALAPGSYLAISHLTadtVDAETRGQVDRMVA 212
                      555555555566778888888888888755544444455555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2018.29
//
Query:       KIR60929.1  [L=71]
Description: hypothetical protein TK50_24245 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0053   16.9   0.3      0.023   14.9   0.3    1.9  1  HTH_17      Helix-turn-helix domain
  ------ inclusion threshold ------
      0.023   14.5   0.1       0.19   11.6   0.0    2.0  2  HTH_23      Homeodomain-like domain
      0.025   14.7   0.3        2.3    8.4   0.0    2.2  2  HTH_28      Helix-turn-helix domain
      0.042   13.4   0.0      0.063   12.8   0.0    1.2  1  Sigma70_r4  Sigma-70, region 4
      0.076   12.9   2.2       0.15   11.9   2.2    1.5  1  Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3   6.4e-06     0.023       6      50 ..      13      59 ..       8      60 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.4e-06
      HTH_17  6 EaAelLgvsrstvyrlirrgelpaa.k.iGrrwriprsdleewlekr 50
                E+Ae Lgvsr+  ++l r   +p     + +      +d+eew++k 
  KIR60929.1 13 EIAERLGVSRQRFQQLTRYPTFPKPyQeLRGMKVWLAEDVEEWIRKY 59
                99***************96666544434334477899******9986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.3e-05      0.19      21      36 ..      12      27 ..       7      31 .. 0.86
   2 ?    0.8   0.1      0.12   4.4e+02      34      43 ..      52      61 ..      52      66 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.3e-05
      HTH_23 21 reIAreLgvsrrTvyr 36
                 eIA++Lgvsr+  ++
  KIR60929.1 12 YEIAERLGVSRQRFQQ 27
                59*********98876 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.12
      HTH_23 34 vyrwlkryre 43
                v  w+++yr+
  KIR60929.1 52 VEEWIRKYRQ 61
                567*****75 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00065       2.3      17      32 ..      13      28 ..      11      30 .. 0.88
   2 ?    4.4   0.1     0.011        40      29      38 ..      52      61 ..      51      64 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00065
      HTH_28 17 eaArelgisrrtvyrW 32
                e+A++lg+sr++ +++
  KIR60929.1 13 EIAERLGVSRQRFQQL 28
                89*********98876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.011
      HTH_28 29 vyrWikryee 38
                v  Wi++y++
  KIR60929.1 52 VEEWIRKYRQ 61
                567******8 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.7e-05     0.063      25      42 ..      13      30 ..      12      31 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.7e-05
                HHHHHHTS-HHHHHHHHH CS
  Sigma70_r4 25 EIgerlgiSrerVrqiek 42
                EI+erlg+Sr r  q+ +
  KIR60929.1 13 EIAERLGVSRQRFQQLTR 30
                9***********888765 PP

>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.2   4.2e-05      0.15       8      51 .]      13      56 ..      11      56 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.2e-05
  Phage_AlpA  8 eVeqktglsrstiYrlikdgeFPkkvkLGvrsVgWlesEIdeWi 51
                e+++ +g sr    +l +  +FPk+ +      +Wl+++++eWi
  KIR60929.1 13 EIAERLGVSRQRFQQLTRYPTFPKPYQELRGMKVWLAEDVEEWI 56
                57788999999999999999*****986666778*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 572.51
//
Query:       KIR60930.1  [L=86]
Description: hypothetical protein TK50_24255 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       183  (0.0102069); expected 358.6 (0.02)
Passed bias filter:                      146  (0.00814323); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 666.90
//
Query:       KIR60931.1  [L=141]
Description: hypothetical protein TK50_24270 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1082.97
//
Query:       KIR60932.1  [L=262]
Description: lipase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-09   37.5   0.0    5.5e-09   35.9   0.0    1.8  1  Lipase_2       Lipase (class 2)
    3.8e-07   30.2   0.0    4.5e-07   29.9   0.0    1.3  1  Palm_thioest   Palmitoyl protein thioesterase
    1.3e-06   28.3   0.2    1.7e-06   27.9   0.2    1.2  1  Abhydrolase_1  alpha/beta hydrolase fold
    0.00019   22.1   9.9    0.00019   22.1   9.9    2.6  2  Abhydrolase_6  Alpha/beta hydrolase family
    0.00031   20.3   0.0    0.00063   19.3   0.0    1.5  1  DUF676         Putative serine esterase (DUF676)
    0.00061   19.1   0.3     0.0013   18.0   0.1    1.7  1  Hydrolase_4    Serine aminopeptidase, S33
      0.001   18.9   0.0     0.0015   18.3   0.0    1.2  1  PGAP1          PGAP1-like protein
     0.0023   17.2   0.0     0.0031   16.7   0.0    1.1  1  LCAT           Lecithin:cholesterol acyltransferase
  ------ inclusion threshold ------
       0.06   12.9   0.0      0.086   12.3   0.0    1.2  1  DUF900         Alpha/beta hydrolase of unknown function (DUF9
       0.19   12.0  11.9      0.043   14.1   8.6    1.6  2  RskA           Anti-sigma-K factor rskA


Domain annotation for each model (and alignments):
>> Lipase_2  Lipase (class 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0     3e-12   5.5e-09      65     183 ..      99     210 ..      45     240 .. 0.73

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 3e-12
    Lipase_2  65 ilaVlkyTgakkvdivahsmGvpiaRkailGgkcvdtnedLgepltskvdtfvsvaganaGlllcasadstlepiCnkknglnCeSkfLqdiNakkkke 163
                 +  V++ Tga++vd vahs+G+ ++R+ i    + ++    ++  t + +t+v+  ++  Gl  c +   ++  +C+   ++   S+fL+ +N+ + + 
  KIR60932.1  99 VDQVRATTGAARVDLVAHSEGGLVSRYLIRNLGGGTKVGRYVSLGTPHYGTYVADIAKFLGLGSCLG---IV--ACQ---QMAIGSSFLTALNDGDDTP 189
                 5568899**********************866555555555554556899****999*********9...33..786...4455699***********9 PP

    Lipase_2 164 .geavfsiwskadevigkakl 183
                      +++ + +de++   ++
  KIR60932.1 190 gDVRWTAVRTLQDELVRPVDN 210
                 556789999*****9974433 PP

>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   2.5e-10   4.5e-07      47     115 ..      91     172 ..      47     216 .. 0.68

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 2.5e-10
  Palm_thioest  47 ffgnlndqveavckklelangfhaiGfSQGglflRaliercddkknvrnlislggpqaGvfg........l......llckva 115
                   +   + + v++v +  + a  ++++++S Ggl+ R li +    ++v +++slg+p+ G +         l      ++c+ +
    KIR60932.1  91 SARAFSAYVDQVRAT-TGAARVDLVAHSEGGLVSRYLIRNLGGGTKVGRYVSLGTPHYGTYVadiakflgLgsclgiVACQQM 172
                   233333334444333.46789********************99999**************98555554440444555566655 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.2   9.6e-10   1.7e-06       1     110 [.      46     146 ..      46     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 9.6e-10
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHH.. CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaey.. 94 
                    ++++++ Gl   +  +    la  L  dgf+v ++ l+G g+++ a +         ++ +++d++++ +g  ++ lv+hS GG++++++      
     KIR60932.1  46 NPVIVVAGLSTPALGYEP--LAARLRADGFRVSIFQLPGLGFGDIADSA-------RAFSAYVDQVRATTGAARVDLVAHSEGGLVSRYLIRNLgg 132
                    688999999998888889..99999999*******************85.......4599****************************999999** PP

                    GGGEEEEEEESECSSC CS
  Abhydrolase_1  95 perVkalvllgaidpa 110
                      +V + v+lg+  p+
     KIR60932.1 133 GTKVGRYVSLGT--PH 146
                    ***********9..44 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   2.7       4.1   7.3e+03      79     105 ..       8      38 ..       6      48 .. 0.42
   2 !   22.1   9.9     1e-07   0.00019       1      96 [.      48     145 ..      48     241 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.1
                    HHHHHHCC..EEEEES-......----TTTS CS
  Abhydrolase_6  79 alaaaplalvvgvlldppp....talpagll 105
                    a +aa+ a  ++vl  p p     a+pa+ +
     KIR60932.1   8 AVLAASTATAAAVLAGPSPaaaqAATPASAA 38 
                    4555555554447777744332222222221 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 1e-07
                    EEEE--GC.....GCHHHH.HHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHHHHHHCCTT....TTSEEEEEETCHHHHHHHHHHCC....... CS
  Abhydrolase_6   1 vlllHGagssassWlvapL.aallaagvhvlapDlpGhGrsdpppldledladlaalldelaa..gggpvvlvGHSlGGalalaaapla....... 86 
                    v+++ G++++a ++   pL a+l+a+g++v +++lpG G   ++  d   +++++a++d ++a  g+ +v lv+HS GG+++     l        
     KIR60932.1  48 VIVVAGLSTPALGYE--PLaARLRADGFRVSIFQLPGLG--FGDIADS--ARAFSAYVDQVRAttGAARVDLVAHSEGGLVSRY---LIrnlgggt 134
                    688999999999998..9967777777***********9..6555555..5666777777777777799***********8777...333335664 PP

                    ..EE..EEES-. CS
  Abhydrolase_6  87 lvvg..vlldpp 96 
                      vg  v l +p
     KIR60932.1 135 K-VGryVSLGTP 145
                    3.3325444442 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.5e-07   0.00063      73     132 ..     104     152 ..      86     180 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.5e-07
      DUF676  73 kkkdknkkiSfvghSlGgliaraaiaklkekemtlkeaikglepvtfitlasPhLGvlys 132
                 +     +++ +v+hS Ggl++r+ i+ l            g ++  +++l +Ph G+   
  KIR60932.1 104 ATTG-AARVDLVAHSEGGLVSRYLIRNLGG----------GTKVGRYVSLGTPHYGTYVA 152
                 3333.57999****************8773..........346889**********8765 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   7.4e-07    0.0013       7      94 ..      48     127 ..      41     144 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7.4e-07
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyl 94 
                  v++v Gl   +  y+ la++L a Gf v ++   G G          ++ d  + ++a+v++v+++ + +++ l++hS GGl++  ++
   KIR60932.1  48 VIVVAGLSTPALGYEPLAARLRADGFRVSIFQLPGLGFG--------DIADSARAFSAYVDQVRATTGAARVDLVAHSEGGLVSRYLI 127
                  8999*********************************98........55666666777777777778888899*********987655 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   8.5e-07    0.0015      86     134 ..     104     151 ..      92     162 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.5e-07
       PGAP1  86 sekeptsviliGHSmGGivaraaltlknyikqsvntiltlasPhalppl 134
                 +++   +v l++HS GG+v+r ++        +v   ++l++Ph  + +
  KIR60932.1 104 ATTGAARVDLVAHSEGGLVSRYLIRNLG-GGTKVGRYVSLGTPHYGTYV 151
                 5567789**************9887766.6899***********87765 PP

>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.7e-06    0.0031     113     167 ..     100     151 ..      93     181 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.7e-06
        LCAT 113 eealk.lsgkkvvliaHSmGnllvlyflkwveaeaWvdqhikafislgapllGsvk 167
                 +++ + +++ +v l+aHS G+l+++y ++++        ++ +++slg+p  G   
  KIR60932.1 100 DQVRAtTGAARVDLVAHSEGGLVSRYLIRNLGGG----TKVGRYVSLGTPHYGTYV 151
                 55555577899******************96555....5**************854 PP

>> DUF900  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.8e-05     0.086      75     117 ..      90     132 ..      87     154 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.8e-05
      DUF900  75 asrdalekllrylatkksakkihllaHSmGtwlvlealrqlai 117
                  s+ a+   + +++ +++a +++l+aHS G  + +  +r+l  
  KIR60932.1  90 DSARAFSAYVDQVRATTGAARVDLVAHSEGGLVSRYLIRNLGG 132
                 58999****************************9999999876 PP

>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   8.6   2.4e-05     0.043       6     100 ..       3     104 ..       1     143 [. 0.67
   2 ?   -1.9   0.1         2   3.6e+03      81     116 ..     181     216 ..     168     221 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
                 HHHHHHTT-X...........................XXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXX........XXXX.XXXXXX CS
        RskA   6 warilaalaatpqaaaaaaaaaaapppaaapaararrlaaaaAaalllvlgqlavasaaldplrqsaaqaeavvavlaap........daagatatvvd 96 
                  ++ila laa++++aaa  a +++++++aa++a+a++ aaaaA  +++v+g l++ +   +pl+++ +++  +v++ + p        d+a a  + vd
  KIR60932.1   3 LRKILAVLAASTATAAAVLAGPSPAAAQAATPASAAARAAAAANPVIVVAG-LSTPALGYEPLAARLRADGFRVSIFQLPglgfgdiaDSARAFSAYVD 100
                 679*******************99998888887766555555555556666.55555555566666666655565555556666655444444444444 PP

                 XXXX CS
        RskA  97 sasg 100
                 + ++
  KIR60932.1 101 QVRA 104
                 4443 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
                 XXXXX.XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX CS
        RskA  81 vlaap.daagatatvvdsasggalvldvsglpalpag 116
                  l+++ d+ g + ++++   +++lv +v++  +l++g
  KIR60932.1 181 ALNDGdDTPGDVRWTAVRTLQDELVRPVDNA-TLADG 216
                 4555545555666777777788888888886.66666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 1786.35
//
Query:       KIR60933.1  [L=290]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-61  207.9   0.0    8.6e-46  156.5   0.0    2.0  2  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   0.0   4.8e-50   8.6e-46       1     198 [.      26     223 ..      26     227 .. 0.98
   2 !   49.7   0.0   1.6e-17   2.8e-13     232     292 ..     229     289 ..     226     290 .] 0.95

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 4.8e-50
                   .EEEE-SSS-ST.....TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE...--SSSTTSSSS-HHHHHHHH CS
  Aldo_ket_red   1 elglGtwqlgsk....eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv...dlrdaeiksglskeniresl 90 
                   +lg+G++ql+++    ++ +++ea+++lrra+e G++f+DtA++Yg+  se l+ +al       ++++iatK    + +++++++ +++e +r+++
    KIR60933.1  26 RLGYGAMQLTGPgvwgDPRDPAEAVRVLRRAYELGVTFIDTADSYGPFVSELLIRQALHP---YADDLVIATKAgltRSGPGDWRPVGRPEYLRQQC 119
                   59*************99*******************************************...*************99******************* PP

                   HHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEE CS
  Aldo_ket_red  91 eeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpli 187
                   e sl+ Lg++ + l++lHr+d ++p ++++l+ l+ l++eGkir+iG+S+++v+q+e+a   + ++iv+vq+ ynl  ++ +e +l+ c+ +++++i
    KIR60933.1 120 ELSLRHLGLESIGLYQLHRIDAKVP-LADQLGELALLKQEGKIRHIGLSEVTVAQIEQA--RQITPIVSVQNLYNLA-DRSAEDVLDHCERNDLAFI 212
                   *************************.*********************************..****************.******************* PP

                   EBSTTGGGTTG CS
  Aldo_ket_red 188 aysplggGllt 198
                   ++ p++ G l 
    KIR60933.1 213 PWFPIATGNLA 223
                   *******9886 PP

  == domain 2  score: 49.7 bits;  conditional E-value: 1.6e-17
                   HHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 232 lselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                   l+++  +hg ++aqlal+++l +++v+ +ipg+s++++le+n++a +++l+++e+a+l+++
    KIR60933.1 229 LDAISTDHGATPAQLALAWLLRRSPVVLPIPGTSSVAHLEENVAAAQVQLTDDEYAALAKA 289
                   6789999**************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1943.16
//
Query:       KIR60934.1  [L=530]
Description: GMC oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-67  228.5   0.0    1.5e-67  228.1   0.0    1.2  1  GMC_oxred_N    GMC oxidoreductase
      4e-31  108.5   0.1    6.8e-31  107.7   0.1    1.4  1  GMC_oxred_C    GMC oxidoreductase
    2.6e-08   33.4   1.3     0.0024   17.0   0.1    2.3  2  FAD_binding_2  FAD binding domain
    2.6e-06   27.3   2.1     0.0013   18.4   0.4    2.5  2  DAO            FAD dependent oxidoreductase
      1e-05   24.8   0.1    2.1e-05   23.7   0.1    1.5  1  Lycopene_cycl  Lycopene cyclase protein
    0.00028   21.0   5.1    0.00067   19.8   0.4    3.9  4  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00045   19.6   0.0     0.0078   15.5   0.0    2.1  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.042   12.6   0.3      0.098   11.3   0.1    1.6  2  HI0933_like    HI0933-like protein
      0.048   13.4   1.3       0.25   11.1   0.3    2.3  2  Herpes_LP      Herpesvirus leader protein
       0.07   12.8   0.0       0.11   12.1   0.0    1.3  1  ApbA           Ketopantoate reductase PanE/ApbA
      0.077   12.2   0.1       0.18   11.1   0.1    1.6  1  Thi4           Thi4 family
        0.1   11.8   0.0          3    7.0   0.0    2.1  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.1   0.0   9.9e-71   1.5e-67       1     294 [.       4     290 ..       4     292 .. 0.95

  Alignments for each domain:
  == domain 1  score: 228.1 bits;  conditional E-value: 9.9e-71
  GMC_oxred_N   1 vdelveggGsagsvvAaRLsedpstsvlvleaggreknrl.imvlalalklidkklntayetepekalngrrlilpaGktlGGgsvvNwsayiRtpaa 97 
                  +d++v+g+G+ag+v+A RLs+dp+t+vl++eagg +++++  +++a+   + d +++++y   p +a  grr ++++G+ +GG+s+vN+++y R+ + 
   KIR60934.1   4 FDYVVVGAGAAGCVLAHRLSADPATRVLLVEAGGWDRSPFvRIPKAFSRLMDDRRTAWHY---PAEAAPGRREVWQRGRLVGGSSSVNGMVYGRGDRL 98 
                  69**************************************88888888888888888886...788899***************************** PP

  GMC_oxred_N  98 dldeWeeeaglegwssdevlpafkkvetaqalesdlhgvdgrlgvtekgkeesplnkallkaaeelGlpvprdlngkhqcGvcllgvtcrtgarqsta 195
                  d d  e+  g++gw++d++lp+f+++e++  + s  +g  g+l+  ++++ + +l++++++a++ lG+  ++dln  +++  + +  t r+g+r s+a
   KIR60934.1  99 DWDGLERL-GNPGWGWDTMLPIFRRLEDHPLGASPTRGAGGPLRL-SSATGTDALCEDVIAAGQALGWHRSDDLNATEDERIGYVTATIRDGRRVSAA 194
                  ***99998.******************877888************.999****************************99999999999********** PP

  GMC_oxred_N 196 rawLrpalerpnleiltgakaekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgvdvvvdlp.vGknLq 292
                  +a+L+p   rpnl++  g+ +++i+++  ++ra+GV+a + ++t      a+ evv+aaGa++sPqlLq SG+G+a+ L+  gvdv +d+p vG  L 
   KIR60934.1 195 DAFLHPVRDRPNLTVAVGTAVRRILVR--GGRAIGVRAGSGGRT--VDYAASAEVVLAAGAVASPQLLQVSGIGPADTLRRAGVDVLLDRPrVGLGLR 288
                  ************************999..***************..6677778********************************************9 PP

  GMC_oxred_N 293 dH 294
                   H
   KIR60934.1 289 EH 290
                  99 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.1   4.5e-34   6.8e-31       1     144 []     387     523 ..     387     523 .. 0.93

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 4.5e-34
                  ----EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGG.TTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B- CS
  GMC_oxred_C   1 PesrGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaal.dvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMG 97 
                  P+s+G++ +ss+dp  +p+i  ny+ + +d++ lv+a++ +r+++a+a++  +  +e+ pg+       av+ d ++ ++  +    ++H +Gtc MG
   KIR60934.1 387 PDSEGSLAISSADPGTPPRIVANYFATSHDRRVLVDAFRRMRELFATAPIaGRIAAETVPGP-------AVRGDREIVEAALALGYCGYHAVGTCGMG 477
                  89**********************************************75555566666666.......99999999999999999************ PP

                  STCGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  98 adpkdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  ++++  VVD++lrv+gvd LrVvDaSv+P  +++  +++++alA +a
   KIR60934.1 478 PSDE-HVVDARLRVRGVDALRVVDASVLPVLVSGYLNAPVMALAWRA 523
                  8887.9**************************************987 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.6e-06    0.0024       1      32 [.       5      37 ..       5      43 .. 0.92
   2 !   15.2   0.1   5.9e-06    0.0087     122     204 ..     173     254 ..     114     269 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.6e-06
                   SEEEE--SHHHHHHHHHHHHTTT.-EEEEESSS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGl.kvavvekeq 32
                   D +V+G+G+AG++ A++++   + +v++ve ++
     KIR60934.1  5 DYVVVGAGAAGCVLAHRLSADPAtRVLLVEAGG 37
                   88*****************99999*****9875 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 5.9e-06
                    T..EEEE-.STT-.......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEES.EEEE-----GG CS
  FAD_binding_2 122 t..artlhdaadarr.etlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirak.avvlatgGfgr 204
                    t   r+++ +a+ r+ +++    a l+++ ++    ++++   t++++++v++gr+ G+ +   ++gr+v ++a   vvla+g++  
     KIR60934.1 173 TedERIGYVTATIRDgRRVSAADAFLHPVRDRP---NLTVAVGTAVRRILVRGGRAIGVRAG--SGGRTVDYAASaEVVLAAGAVAS 254
                    155577776666555555555555555555555...4*************************..*******************9876 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.4   8.7e-07    0.0013       1      29 [.       5      36 ..       5      41 .. 0.93
   2 !    8.3   0.1     0.001       1.5     162     207 ..     208     257 ..      91     288 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.7e-07
                EEEEECTSHHHHHHHHHHHHTT...EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg...Vtllekg 29
                d v++G+G +G+  A+ L++ +   V+l+e+g
  KIR60934.1  5 DYVVVGAGAAGCVLAHRLSADPatrVLLVEAG 36
                89****************999899******98 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.001
                 EEEESECEEEEEEEETCEEEEEEECT.EEE.E.EEEE.EEE--GGGHH.HH CS
         DAO 162 eilegtevtgleeedgkvwgverttp.gen.d.aada.vVnaaGawsd.ll 207
                 ++  gt v+++  ++g++ gv r+ + g++ d aa a vV+aaGa ++ +l
  KIR60934.1 208 TVAVGTAVRRILVRGGRAIGV-RAGSgGRTvDyAASAeVVLAAGAVASpQL 257
                 4556799***988899*****.6666566543555559*******987644 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   1.4e-08   2.1e-05       1      33 [.       5      36 ..       5      43 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.4e-08
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieas 33
                   D vv+GaG+Ag+ lA+rl +a p+ +v+l+ea+
     KIR60934.1  5 DYVVVGAGAAGCVLAHRL-SADPATRVLLVEAG 36
                   789***************.99**********98 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.4   4.5e-07   0.00067       1      28 [.       8      36 ..       8      39 .. 0.90
   2 ?   -1.4   0.1       1.9   2.8e+03      32      51 ..     222     243 ..     221     246 .. 0.82
   3 ?   -1.0   0.0       1.4   2.1e+03       8      24 ..     262     278 ..     260     299 .. 0.80
   4 ?   -1.8   0.0       2.6   3.9e+03      44      55 ..     334     345 ..     320     354 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.5e-07
                   EE--SHHHHHHHHHHHCCTE.EEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagf.dvlllekr 28
                   +vGaG++G+v+A++L+ + + +vll+e++
     KIR60934.1  8 VVGAGAAGCVLAHRLSADPAtRVLLVEAG 36
                   8****************95549***9986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.9
                    SGGG-EECE..TTCEECTS--- CS
  NAD_binding_8  32 GGraasyev..pgvrvdygahi 51 
                    GGra  ++   +g++vdy a++
     KIR60934.1 222 GGRAIGVRAgsGGRTVDYAASA 243
                    88888888866679***99975 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.4
                    HHHHHHHHHCCTEEEEE CS
  NAD_binding_8   8 GlvaAylLakagfdvll 24 
                    G   A +L++ag+dvll
     KIR60934.1 262 GIGPADTLRRAGVDVLL 278
                    55568899*****9987 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 2.6
                    EECTS---EEET CS
  NAD_binding_8  44 rvdygahifhgs 55 
                    ++d+gahi  ++
     KIR60934.1 334 VHDVGAHIRSTP 345
                    799999997765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.2e-06    0.0078       1      32 [.       4      36 ..       4      61 .. 0.84
   2 ?    1.8   0.0     0.077   1.1e+02      95     119 ..     234     263 ..     181     281 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.2e-06
                 CSEEEE--SHHHHHHHHHHHH.HTS-EEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaq.agakvtlvele 32
                 +d+vv+G+G+AG+ +a++l++    +v+lve++
   KIR60934.1  4 FDYVVVGAGAAGCVLAHRLSAdPATRVLLVEAG 36
                 589******************558899999744 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.077
                  EEEEEE...SEEEE---E..EE-BCTCTTC CS
                  xxxxxx...xxxxxxxxx..xxxxxxxxxx RF
  Pyr_redox_2  95 eekiay...dklvlAtGs..sprdlgipGv 119
                  +++++y    ++vlA G+  sp +l++ G 
   KIR60934.1 234 GRTVDYaasAEVVLAAGAvaSPQLLQVSGI 263
                  333333335667777775446666666665 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   6.6e-05     0.098       2      32 ..       5      36 ..       4      38 .. 0.91
   2 ?   -1.9   0.0      0.69     1e+03     123     170 ..     206     257 ..     195     263 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.6e-05
                 SEEEE--SHHHHHHHHHH.HHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisa.akrgkrVllleka 32
                 d +v+G+GaAG   A ++ a+   rVll+e++
   KIR60934.1  5 DYVVVGAGAAGCVLAHRLsADPATRVLLVEAG 36
                 789*************99789999*****976 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.69
                  T-EEE-S--EEEEECETTE.EEEEE..TTEEE...EESEEEE----SS-GGG CS
  HI0933_like 123 gvklrletevksvekeedgkfrvkt.kseeel...eadklvlAtGGlSiPkl 170
                  + ++ + t+v+++  + ++++ v++ ++++++   +++++vlA G  + P+l
   KIR60934.1 206 NLTVAVGTAVRRILVRGGRAIGVRAgSGGRTVdyaASAEVVLAAGAVASPQL 257
                  6677777778888777778788887555554422256789999999999986 PP

>> Herpes_LP  Herpesvirus leader protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   0.00017      0.25      54     113 ..      76     143 ..      57     169 .. 0.69
   2 ?    0.2   0.0      0.38   5.7e+02      48      84 ..     417     456 ..     403     491 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
   Herpes_LP  54 qeeevvsgsps..g...prgdrsevpgparpgppgigpegplgqllr..rh.rspsptrggqeprrvr 113
                 q   +v gs s  g    rgdr +  g  r g pg g +  l  + r   h    sptrg   p r+ 
  KIR60934.1  76 QRGRLVGGSSSvnGmvyGRGDRLDWDGLERLGNPGWGWDTMLPIFRRleDHpLGASPTRGAGGPLRLS 143
                 44455555554222222599999999999999999999987665444104423569999999998875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.38
   Herpes_LP  48 rrvlvq...qeeevvsgspsgprgdrsevpgparpgppgi 84 
                 rrvlv+   +  e+ + +p   r     vpgpa  g   i
  KIR60934.1 417 RRVLVDafrRMRELFATAPIAGRIAAETVPGPAVRGDREI 456
                 7888752225678899999999999999999998887665 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.7e-05      0.11       2      27 ..       7      33 ..       6      67 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.7e-05
                EEES-SHHHHHHHHHHHH.HTHCEEEE CS
        ApbA  2 ailGaGaiGsllaakLak.agadvtli 27
                +++GaGa G++la++L++  +  v l+
  KIR60934.1  7 VVVGAGAAGCVLAHRLSAdPATRVLLV 33
                79**************99566666665 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00012      0.18      17      49 ..       3      35 ..       1      37 [. 0.93

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailer 49
                e D v+vGaG++G   a+ l+ +p  +v+++e+
  KIR60934.1  3 EFDYVVVGAGAAGCVLAHRLSADPATRVLLVEA 35
                7899**************************996 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.002         3       1      30 [.       7      36 ..       7      56 .. 0.89
   2 ?    2.7   0.0      0.04        60      84     147 ..     195     264 ..     165     272 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.002
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 +++GaG+aG   a+ l     +++l +E g
   KIR60934.1  7 VVVGAGAAGCVLAHRLSADPATRVLLVEAG 36
                 79**************************98 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.04
  Pyr_redox_3  84 leYlrevaksfelpiklfeeVesvkk.edegfevetske....tyeA.kkviiAtGefdkPnklnipGee 147
                    +l  v ++ +l +   + V+++    ++   v++ ++    +y A  +v++A+G    P++l+++G  
   KIR60934.1 195 DAFLHPVRDRPNLTVAVGTAVRRILVrGGRAIGVRAGSGgrtvDYAAsAEVVLAAGAVASPQLLQVSGIG 264
                  45677777888888888888888877235557777766555555655268*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3795.30
//
Query:       KIR60935.1  [L=482]
Description: pyruvate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-121  405.3   0.4   2.3e-121  404.9   0.4    1.1  1  PK         Pyruvate kinase, barrel domain
    9.5e-26   90.3   0.0    1.3e-24   86.7   0.0    2.8  3  PK_C       Pyruvate kinase, alpha/beta domain
    1.7e-06   27.4   1.4    0.00021   20.5   0.3    3.1  3  HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
  ------ inclusion threshold ------
       0.02   15.0   0.8        2.6    8.3   0.0    3.2  3  HupF_HypC  HupF/HypC family


Domain annotation for each model (and alignments):
>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.9   0.4  5.2e-125  2.3e-121       2     340 ..       5     337 ..       4     341 .. 0.98

  Alignments for each domain:
  == domain 1  score: 404.9 bits;  conditional E-value: 5.2e-125
                 --SEEEEEESCCCTSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHTTTTS-EEEEE---S-EBB--BTTCSSSEEE-TTSEEEEE-SCTC CS
          PK   2 rrtkivctlGPasesvekleklieaGlnvvrlnfshGsheehqerienvreaekklgkkvaillDtkGpeirtgllkdgkkdielkegdklkvsldekl 100
                 rr+kivctlGPa++s e+++ l+eaG+nv+rlnfshGsh +h+++   vrea++++g+ va+l D++Gp+ir g ++dg    e ++gd++ ++ d+ l
  KIR60935.1   5 RRAKIVCTLGPATSSPERIRGLVEAGMNVARLNFSHGSHADHEAVYRLVREAADAAGRPVAVLADLQGPKIRLGRFADGP--HEWRTGDSVVITGDDIL 101
                 89****************************************************************************99..66789********9999 PP

                 TTTBBTTEEEBS-TTHHHHS-TTEEEEETTTTEEEEEEEEETTEEEEEEESS-EEE-SS-BEE-TTS---S-SS-HHHHHHHHHHHHCT-SEEEETTE- CS
          PK 101 keegdeelialdyknivkdvevGktilvdDGllslkvlevdeekeleveventgvlgskkgvnlpgtkvdlpalsekDkadlrfgvkqgvdliaasfvr 199
                  +   +e ++ +y+++ ++v++G+++l+dDG+++++v ev  +  +++ v+ +g ++++kgv lp+++v++pals+kD +dlrf++  gvd+ia+sfvr
  KIR60935.1 102 GT---KERVSCTYRKLPQEVKAGDRLLIDDGRVAVEVSEVVGND-IRCLVTEGGPVSNNKGVSLPNVAVSVPALSDKDAEDLRFALGLGVDMIALSFVR 196
                 86...69**********************************998.****************************************************** PP

                 SHHHHHHHHHHHTCCCTTSEEEEEE-SCHHHHTHHHHHHHSSEEEEEHHHHHHHSTCCCHHHHHHHHHHHHHHHT--EEEESSTTGGGGTSSS--HHHH CS
          PK 200 kasDvkevrevleeegkeikiiakienqegvenldeileasDgimvarGDlGieipaekvllvqkklikkcnlagkpvitatqmlesmiknPrptraev 298
                 +a+D+k v ++++eeg +  ++ak+e+ e+v++l+ i+ a Dg+mvarGDlG+e+p ++v+lvqk+ ++ c+   kpvi+atqml+smi+n rptrae+
  KIR60935.1 197 SAEDIKLVHNIMDEEGVRRPVLAKVEKPEAVDHLEAIVLAFDGVMVARGDLGVELPLDQVPLVQKRAVQLCRENAKPVIVATQMLDSMIENSRPTRAEA 295
                 *************************************************************************************************** PP

                 HHHHHHHHHT-SEEEESHHHHTSS-HHHHHHHHHHHHHHHHH CS
          PK 299 sDvanavlDGtDavmLsgetakGkyPveavkamaevaleaek 340
                 sDvanavlDG+DavmLsget+ GkyPv +v +ma++ +++e+
  KIR60935.1 296 SDVANAVLDGADAVMLSGETSVGKYPVLTVSTMAKIITTTEA 337
                 ************************************999885 PP

>> PK_C  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.4   1.8e+03      92     107 ..      88     103 ..      34     109 .. 0.82
   2 ?   -2.4   0.0       1.2   5.3e+03       7      25 ..     263     280 ..     258     296 .. 0.71
   3 !   86.7   0.0   2.9e-28   1.3e-24       3     117 .]     356     467 ..     354     467 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.4
                 -STSEEEEEE-SSSS. CS
        PK_C  92 kkgdevvvtaGtpkge 107
                 ++gd+vv+t+ +  g+
  KIR60935.1  88 RTGDSVVITGDDILGT 103
                 6899999999887775 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
                 HHHHHHHHT-SEEEEE-SS CS
        PK_C   7 aveaaeelgakaIvvltes 25 
                 av++++e +ak ++v+t+ 
  KIR60935.1 263 AVQLCRE-NAKPVIVATQM 280
                 6666663.68888888875 PP

  == domain 3  score: 86.7 bits;  conditional E-value: 2.9e-28
                 HHHHHHHHHHHHT-SEEEEE-SSSHHHHHHHHT-TSSEEEEEESHHHHHHHHHHCTTEEHHH.HHHHH...TTSHHHHHHHHHHHTTSS-STSEEEEEE CS
        PK_C   3 iakaaveaaeelgakaIvvltesGetArliskyrpkvpiiavtpneltarqlalyrGvypvlvekaktaestdellreavkvakeaglvkkgdevvvta 101
                 ++ aa ++a+ +gaka v+++++G+t++++s++  ++p+ a+tp +++  qlal++Gv ++l++     e+td+++r++ ++++    +++gd vv++a
  KIR60935.1 356 LTVAASSIARAIGAKALVAFSQTGDTVKRLSRLHCDLPLWAFTPVPEVRSQLALCWGVETFLMPF---VEHTDDMFRQVDQALLGLDRANPGDYVVIVA 451
                 667999********************************************************997...688**************************** PP

                 -SSSS..SS--EEEEE CS
        PK_C 102 GtpkgesgttNtlrVv 117
                 G+p g++g+tNtlrV+
  KIR60935.1 452 GSPPGTPGSTNTLRVH 467
                 ***************7 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.3   4.6e-08   0.00021      62     147 ..     164     243 ..     156     278 .. 0.88
   2 ?    2.0   0.0     0.021        93      13      33 ..     297     317 ..     291     346 .. 0.80
   3 ?    1.6   0.0     0.028   1.3e+02      80     105 ..     408     434 ..     399     450 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.6e-08
                 EEEE-SSTTHHHHHHHGG.HHHTTSSEEEESS--SHHHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHH.TSTTEEEE CS
   HpcH_HpaI  62 vvVRvnsldselikqdle.vldlgaqvvlvPkvetaeealevvsalrepekgirganketrllaqiEsaegvknaeeIa.avegldgv 147
                 v V v++l+++ +++ l+ +l lg++ + + +v +ae+++ v +++ e    +r+     ++la +E  e+v+ +e+I+ a +g++++
  KIR60935.1 164 VAVSVPALSDKDAED-LRfALGLGVDMIALSFVRSAEDIKLVHNIMDEEG--VRR-----PVLAKVEKPEAVDHLEAIVlAFDGVMVA 243
                 678899999988888.999**************************99876..555.....9*****************9898877654 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.021
                 HHHHHCTC--SEEEEESSTSS CS
   HpcH_HpaI  13 laekaaiagaDsvliDlEdav 33 
                  + +a + gaD+v++ +E +v
  KIR60935.1 297 DVANAVLDGADAVMLSGETSV 317
                 56788899**********999 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.028
                 HHHTTSSEEEESS--SHHHH.HHHHHH CS
   HpcH_HpaI  80 vldlgaqvvlvPkvetaeea.levvsa 105
                 +l  g++++l+P+ve  +++ ++v++a
  KIR60935.1 408 ALCWGVETFLMPFVEHTDDMfRQVDQA 434
                 566799*********988862566655 PP

>> HupF_HypC  HupF/HypC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.021        96      20      48 ..      99     131 ..      90     138 .. 0.83
   2 ?   -1.7   0.0      0.73   3.3e+03      31      58 ..     310     337 ..     301     340 .. 0.80
   3 ?    8.3   0.0   0.00058       2.6      24      47 ..     427     452 ..     420     453 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.021
                 ECTTEEEEEEGTTC...TTB-TT-EEEEETT.E CS
   HupF_HypC  20 dvgGvrrevslalv...eevkvGdyVLvhvG.f 48 
                 d+ G++++vs+ +    +evk Gd +L+  G +
  KIR60935.1  99 DILGTKERVSCTYRklpQEVKAGDRLLIDDGrV 131
                 5669999***999999889********988844 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.73
                 TTCTTB-TT-EEEEETTEEEEEE-HHHH CS
   HupF_HypC  31 alveevkvGdyVLvhvGfAiekideeea 58 
                 +l +e +vG+y ++ v +  ++i+  ea
  KIR60935.1 310 MLSGETSVGKYPVLTVSTMAKIITTTEA 337
                 4558999999988888888888888887 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00058
                 EEEEEEGTTC..TTB-TT-EEEEETT CS
   HupF_HypC  24 vrrevslalv..eevkvGdyVLvhvG 47 
                   r+v+ al+  + +++GdyV++ +G
  KIR60935.1 427 MFRQVDQALLglDRANPGDYVVIVAG 452
                 56999999*99999*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3706.03
//
Query:       KIR60936.1  [L=294]
Description: acyl-CoA thioesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-63  214.9   2.7    2.5e-63  214.7   2.7    1.0  1  4HBT_3         Thioesterase-like superfamily
    1.4e-43  147.9   0.0    8.7e-34  116.2   0.0    3.0  2  Acyl_CoA_thio  Acyl-CoA thioesterase


Domain annotation for each model (and alignments):
>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.7   2.7   2.8e-67   2.5e-63       2     247 ..      33     288 ..      32     289 .. 0.87

  Alignments for each domain:
  == domain 1  score: 214.7 bits;  conditional E-value: 2.8e-67
                 -GGGECTTC.-HHHHHHHHHHHHHHT..-S.SS.EEEEEEE-S---SE.EEEEEEEEEE--SS-EEEEEEEEETTEEEEEEEEEEE---T....---EE CS
      4HBT_3   2 rppwtpggagyGGyvlAlalraaqrtv.pdprl.hslhvyFlrpgdag.pviyhvervrdGrsfstrtvelsqggrpiftatasfgraestgwelepaa 97 
                 +pp  p+++ yGG+v+++al aa rtv p+ r+ hslh+yF+rpgd++ p+ y+ve vrdGrsfs+r+  + q+++pif ++asf+r+e++g   ++a+
  KIR60936.1  33 SPPVGPQRV-YGGQVAGQALVAAGRTVaPE-RFvHSLHGYFVRPGDPAePIAYQVENVRDGRSFSVRRSVALQHDKPIFFMSASFQRHEEEGL-DHHAP 128
                 577788888.****************9677.799*******************************************************8443.45678 PP

                 -------.GGGE-.--.--SSGGGS.GG..TEEEE-HHT-.--S..........S-EEEEEEEET...TTS-SSHHHHHHHHTT-....-GGGGTSS-. CS
      4HBT_3  98 apppvpppdeaal.aadeaplplfr.rvpgflepfeprpa.egg..kpd.spagpkrvrqWvrlr...eggepahlaaLaylsDs.f..pvprvhglrl 184
                 +pp+vp+pd+++  + + a++p+    + +  +p++ r++ e+g  +p  +p +++++r+W+r     ++++ +h +aL y+sD  +   v+ vhg  +
  KIR60936.1 129 TPPDVPAPDDVPTmSDRLARYPERLgIWGQIPRPIDVRYVgEPGwvRPGdRP-ADPHQRVWMRIDgklPDDPLLHACALTYASDLtLldSVLSVHGEVW 226
                 89******9998856668888888878877777*****99555576444144.467899*****88888889*************889*9999999998 PP

                 .....SB--EEEEEEEE-S--.S-...EEEEEE-SEEETTEEEEEEEEE-TTS-EEEEEEEEEE CS
      4HBT_3 185 daeasgwmpsldltiyfhrep.aedeWllleaetpwagdgrglvearlwdedGrlvAtstQegl 247
                   ++  + +sld++++fhr p ++deW+l+++ +p+a++ rgl+++r+++ dGr++A+++Qegl
  KIR60936.1 227 G-PGGVVGASLDHALWFHR-PfRADEWFLYDCWSPSASGARGLATGRMFTTDGRHIASAVQEGL 288
                 7.4547889**********.63569*************************************98 PP

>> Acyl_CoA_thio  Acyl-CoA thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.3e-09   1.2e-05      21     126 ..      40     110 ..      22     122 .. 0.80
   2 !  116.2   0.0   9.7e-38   8.7e-34      25     132 .]     177     288 ..     163     288 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.3e-09
                    BTTCHHHHHEECCCCCCCCTS-TTHCCCCCHHHHHTTSSSGGGGGGGGTTTSTTEEEEEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCE CS
  Acyl_CoA_thio  21 refgGqvvaekqsllrakktvPddallhsvllaYlSDltllltalttHelledslqvsldHsvyFlrpgdlnewilydvespsasggrgLrqGriF 116
                    r++gGqv+   q+l++a +tv  ++++hs+                              H  yF+rpgd +e+i y+ve+         r+Gr+F
     KIR60936.1  40 RVYGGQVAG--QALVAAGRTVAPERFVHSL------------------------------HG-YFVRPGDPAEPIAYQVEN--------VRDGRSF 94 
                    566666666..6666666666666666666..............................99.******************........9999999 PP

                    E......ECTTEEEEE CS
  Acyl_CoA_thio 117 s......tqdgklias 126
                    s       q++k i+ 
     KIR60936.1  95 SvrrsvaLQHDKPIFF 110
                    9888888999999986 PP

  == domain 2  score: 116.2 bits;  conditional E-value: 9.7e-38
                    HHHHH..EECCCCCCCCTS-TTHCCCCCHHHHHTTSSSGGGGGGGGT..TTSTTEEE.EEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECC CS
  Acyl_CoA_thio  25 Gqvva..ekqsllrakktvPddallhsvllaYlSDltllltalttHe..lledslqv.sldHsvyFlrpgdlnewilydvespsasggrgLrqGri 115
                    G++ a  ++++++r+ +++Pdd+llh ++l+Y+SDltll+++l  H+  +   ++   sldH+++F+rp++++ew lyd  spsasg+rgL+ Gr+
     KIR60936.1 177 GDRPAdpHQRVWMRIDGKLPDDPLLHACALTYASDLTLLDSVLSVHGevWGPGGVVGaSLDHALWFHRPFRADEWFLYDCWSPSASGARGLATGRM 272
                    66666679***************************************98777777768************************************** PP

                    EEECTTEEEEEEEEEEE CS
  Acyl_CoA_thio 116 FstqdgkliasvqqeGl 132
                    F t dg+ ias++qeGl
     KIR60936.1 273 F-TTDGRHIASAVQEGL 288
                    *.*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2088.31
//
Query:       KIR60937.1  [L=595]
Description: von Willebrand factor A [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-30  107.1   5.5    1.9e-30  106.4   5.5    1.4  1  SBP_bac_11  Bacterial extracellular solute-binding protein
    8.6e-12   45.6   0.0    1.6e-11   44.8   0.0    1.4  1  VWA         von Willebrand factor type A domain
    5.1e-11   43.2   0.0      2e-10   41.3   0.0    1.9  2  VWA_2       von Willebrand factor type A domain
      2e-06   27.8   0.0    6.3e-06   26.2   0.0    1.8  2  VWA_3       von Willebrand factor type A domain
    0.00031   20.6   0.0    0.00064   19.6   0.0    1.4  1  SBP_bac_8   Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
       0.06   12.7   0.0       0.81    9.0   0.0    2.3  1  VWA_CoxE    VWA domain containing CoxE-like protein


Domain annotation for each model (and alignments):
>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   5.5   6.2e-34   1.9e-30       1     230 []      46     359 ..      46     359 .. 0.80

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 6.2e-34
                 .EEEE-SSTHHHHHHHHHHH.HHHH-......--EEEEESSHHHHHHHHHHH...........-SEEEESSH.HHHHH....HHHGGGGG..GG-EEEE CS
  SBP_bac_11   1 ltvaaagslaaalrelaaaF.eahtg......vkvevsaggsgklarqiadga.........rpDvwipassawlell....aaaglvqa..esavpla 77 
                 l v +++++a  +++laa++ +a+         +v+v + +sgk+++++a+g+         +p+vw+p+ss w  +l    ++ag++++  +++ ++a
  KIR60937.1  46 LEVNSSTEKADLVAQLAARYnAAD-RrfggrcAEVTVHGLNSGKAMEALAAGNwsgrqpgvpAPQVWLPTSSLWTGRLrlldEQAGRAAQtpGRYPSIA 143
                 67899***************5554.4477899*****************6665555566679************888632133445555589******* PP

                 EEEEEEEESTT-.....T............T---SHHHHHHSS-...-EEEE--T-TTTTH.H.HHHHGGG--...............HHHHHHHHHTE CS
  SBP_bac_11  78 ssplviavpkgn.....p............kkikgwadLlkpgl...klavadPttspsGl.aalalleaaga...............qellkalekkv 140
                  splvia+p ++                   ++ gwa+ ++p++   +++  +P+ s+sGl a++a++ aa +                ++++++e +v
  KIR60937.1 144 NSPLVIAMPLEKgelvrQrgrlgwadvlglSGDAGWAAFGRPEWgrfTFGKDNPNLSTSGLaATIATYYAAVRrssdltkadlakpavTQFVRRIEANV 242
                 ************6555505555555555556899********999778*************55557888774445556666778888999********* PP

                 EEEESSHHHHHHH................HHTTT-SEEEEEHHHH...........H..HSTTSSEEEE--TTT--...EEEEEEEE..-TT--HHHHH CS
  SBP_bac_11 141 vklgessrqllta................veageadagivyesea...........kaaengdkleavylpeglnldpldypaavlk..kaakreaAra 210
                  +++++s +ll +                ++a +  a++v+e ++             ++++ +l+av+++eg+    ld p++vl   +aa+++aA++
  KIR60937.1 243 SHYSDDSVDLLRDlaeadlggaaaggagdARARDMSAVVVQEELVyqynegqlsptPGQKPRVPLVAVHPSEGTFN--LDHPYVVLPsaDAAQQAAAQD 339
                 *******555555555488887776777777777889999999999888888765544478999999******984..8888888864477999***** PP

                 HHHHTTSHHHHHHHHHTT-B CS
  SBP_bac_11 211 FlafLrspeaqailrkyGfr 230
                 FlafL+  ++q+ +++ Gfr
  KIR60937.1 340 FLAFLQAGPQQRSFADLGFR 359
                 *******************8 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   5.4e-15   1.6e-11       1     172 [.     407     587 ..     407     590 .. 0.87

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 5.4e-15
                 EEEEEEE-STTS.....CHHHHHHHHHHHHHHHHHHTBTTTTEEEEEEEESSS........EEEEEETTSHCHHHHHHHHHHTGSGGGGSSC-HHHHHH CS
         VWA   1 DivfvlDgSgsm.....geenfekvkefikklveklevgpegtrvglvqfsse........vktefslndysskeellsalnnlkysgggttntgkalk 86 
                 +i +++D+Sgsm     ++ +f+ + +++ + v+ l+     +rv+l +fsse        + +e++l  y  ++++++ l  l   gg+t+ + + + 
  KIR60937.1 407 NILLAVDTSGSMnakvgSRTRFQVATTAVDRGVGLLN---SADRVALWSFSSEtpqrpgkpYSEEVRLGPYD-RAAFARRLTGL-RVGGNTA-LYATVR 499
                 799**********9999999*****************...***********999988888777788888877.6*********7.5555555.999*** PP

                 HHHHHHHHHHGTSSTTSEEEEEEEESS--CS.S..HTHHHHHHHH...GCTEEEEEEEE.SSSHHHHHHHHHSSSSCHHCEEEESSHHHHHHH CS
         VWA  87 yaleklfkssagaRenakkviilltdGksnd.g..dpkeaaneak...eqgikvfavGv.gnadekelLnkiasepgeghvftvtdfeeleel 172
                 +a ++l+        +  + +++ltdGk++  +  d+++ ++ +    ++ +kvf+v++ ++ d ++ L +ia+ ++ g++f +td +++ e+
  KIR60937.1 500 AAHRRLLADYDP---DRINAVVVLTDGKNEYpKdnDLDRLLADIEldpDRPVKVFCVAFdRESDLAA-LDRIAGASA-GKAFDATDPATIDEA 587
                 *********999...777***********995599888888888888799*********55555555.********9.********9988765 PP

>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.7     5e+03      17      70 ..     220     239 ..     205     257 .. 0.60
   2 !   41.3   0.0   6.7e-14     2e-10       1     107 []     408     524 ..     408     524 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.7
       VWA_2  17 gptrleaakdaveallkslpgdrvglvtfsdgpevlipltkdkakilnalrnle 70 
                   t+ + ak av++++ ++                                  e
  KIR60937.1 220 DLTKADLAKPAVTQFVRRI----------------------------------E 239
                 3455666666666666544..................................3 PP

  == domain 2  score: 41.3 bits;  conditional E-value: 6.7e-14
       VWA_2   1 lvfvlDtSgSmrngdygptrleaakdaveallkslp.gdrvglvtfsd.gpevlipl...t.....kdkakilnalrnleakgggtnlaaaLqlarkal 89 
                 +++ +DtSgSm+++  + tr++ a  av + ++ l+  drv+l +fs+ +p++  ++   +      d+a++ ++l +l+  gg+t l a ++ a+  l
  KIR60937.1 408 ILLAVDTSGSMNAKVGSRTRFQVATTAVDRGVGLLNsADRVALWSFSSeTPQRPGKPyseEvrlgpYDRAAFARRLTGLRV-GGNTALYATVRAAHRRL 505
                 5899**********999****************9977***********65655444433202333689************8.6*************955 PP

       VWA_2  90 .kkrrkgekrvivlitDge 107
                   +    + + +v++tDg+
  KIR60937.1 506 lADYDPDRINAVVVLTDGK 524
                 255558999********95 PP

>> VWA_3  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.8   8.4e+03      19      46 ..     335     362 ..     328     379 .. 0.50
   2 !   26.2   0.0   2.1e-09   6.3e-06       2     152 ..     407     574 ..     406     576 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.8
       VWA_3  19 lvkdaLsvalrqLptndkiavllfgtkp 46 
                 ++++ + ++l++ p++ ++a l+f++  
  KIR60937.1 335 AAAQDFLAFLQAGPQQRSFADLGFRDHE 362
                 3344444444544444444444444433 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 2.1e-09
       VWA_3   2 evvivvDvsssmsaen...klvkdaLsvalrq...Lptndkiavllfgtkprplfpg.....sravsaaelqealqkikelelslgasnlegaLkealr 89 
                 ++ ++vD+s sm a+    +  + a  +++r+   L++ d++a+ +f ++  p+ pg      + + + ++ + +  +  l +  g++ l ++ ++a r
  KIR60937.1 407 NILLAVDTSGSMNAKVgsrTRFQVATTAVDRGvglLNSADRVALWSFSSE-TPQRPGkpyseEVRLGPYDRAAFARRLTGLRV-GGNTALYATVRAAHR 503
                 7999*********9989997777788888998888*************97.66777766755666777777777888888999.999999999999999 PP

       VWA_3  90 qp...akpgevrsvilltDgss.aqge...ervsdlisrar.ekirfhalglgsslsaamlqaLAeasgGt 152
                        p ++ +v++ltDg    +++   +r+ ++i+  + + +++++++++ + + a+l+++A as G 
  KIR60937.1 504 RLladYDPDRINAVVVLTDGKNeYPKDndlDRLLADIELDPdRPVKVFCVAFDRESDLAALDRIAGASAGK 574
                 55677888************974444467799999999666599************************996 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.1e-07   0.00064     115     257 ..     181     355 ..     166     363 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.1e-07
                 HHHHHHHHHHHH-SE....GG.---GGGGGGTHH.....ETTEE---H...HHH.HHHHHHHHHHHHTT-EE-S...--SSTTT...TTSBSEEEE-TT CS
   SBP_bac_8 115 ellaaakklkgkfgl....pd.pasgwlqaalla.....kdgksldddg.gkdglkealellkklkdngktydtga.davsefa...nGevaftingsw 198
                 ++    +++ g+f++    p+ ++sg + +++++           +d +  + +++++ ++++ + +n+ +y++++ d+  ++a    G +a++ +g++
  KIR60937.1 181 AFGR--PEW-GRFTFgkdnPNlSTSGLAATIATYyaavrR----SSDLTkADLAKPAVTQFVRRIEANVSHYSDDSvDLLRDLAeadLGGAAAGGAGDA 272
                 4444..555.666664322111233333333222433321....1222122455599999999999999999655335555555333444444444444 PP

                 HHHHHH.......................-TTTSEEEE--S--EEEEEEEEEEBTTS-HHHH.HHHHHHHHHTTSHHHHHHHH CS
   SBP_bac_8 199 diaaaq.......................kagkklgaivpkqgsfaggkglavpknaknedl.aAldFlkwltspenqaalae 257
                 ++ +                         k   +l a+ p +g+f   ++++v+ +a+++++ aA+dFl +l    +q+ +a+
  KIR60937.1 273 RARDMSavvvqeelvyqynegqlsptpgqKPRVPLVAVHPSEGTFNLDHPYVVLPSADAAQQaAAQDFLAFLQAGPQQRSFAD 355
                 4444447777788888887777777653333347888899********************************99999999887 PP

>> VWA_CoxE  VWA domain containing CoxE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00027      0.81      54     167 ..     402     530 ..     382     542 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00027
    VWA_CoxE  54 erkprelvllvDvSgSmaay..saiflal.lhAllqqlp......rtevfaFdtrlvd.....lTralrerDpaeaLarvsaaved.lgGgTrigaala 137
                  rk+++++l vD SgSm+a   s+  +++ + A+ +++       r+ +  F++++ +      ++++r   p++  a +++     +gG T ++a+++
  KIR60937.1 402 LRKKANILLAVDTSGSMNAKvgSRTRFQVaTTAVDRGVGllnsadRVALWSFSSETPQrpgkpYSEEVR-LGPYDRAAFARRLTGLrVGGNTALYATVR 499
                 5778899**********8732233333331333333222333344888888888886533333577777.55555544444444445888888888888 PP

    VWA_CoxE 138 eflelv.trpaLsrravvvlvsDglergdre 167
                 ++ ++  +  +  r  +vv+++Dg ++++++
  KIR60937.1 500 AAHRRLlADYDPDRINAVVVLTDGKNEYPKD 530
                 7766541444445677888888887766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3890.14
//
Query:       KIR60938.1  [L=156]
Description: Rrf2 family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-25   88.4   0.0    6.1e-25   87.4   0.0    1.5  1  Rrf2          Transcriptional regulator
     0.0021   17.7   0.0     0.0041   16.7   0.0    1.4  1  HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor


Domain annotation for each model (and alignments):
>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   0.0   6.8e-29   6.1e-25       1      83 []       1      89 [.       1      89 [. 0.90

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 6.8e-29
                X---HHHHHHHHHHHHH......HHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSHCCCSBHHHHHHHH CS
        Rrf2  1 MklsskteyalhallyL......akeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLakppeeItlldvvrav 83
                M+ls++++yal+a ++L      a  ++++pv++e+ia++q+i+p++le il +Lr+ g+v+++rG++GGy+La+p++eI+l++v+r++
  KIR60938.1  1 MRLSARVDYALRAAAELaavadgAGAARSRPVTAEQIAKSQEIPPKFLESILLQLRRGGIVHAQRGPEGGYWLARPAAEISLAEVIRVI 89
                9****************44444333455667*******************************************************986 PP

>> HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor, HrcA DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.6e-07    0.0041      21      65 ..      29      73 ..      25      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.6e-07
  HrcA_DNA-bdg 21 kravKgeeiAevlkrneGtvRNqlqsLkalgLvegvpGPkGGYkP 65
                  +r+v +e+iA+  +  +  +  +l  L+  g+v+++ GP+GGY  
    KIR60938.1 29 SRPVTAEQIAKSQEIPPKFLESILLQLRRGGIVHAQRGPEGGYWL 73
                  7899***************************************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1102.40
//
Query:       KIR60939.1  [L=469]
Description: amino acid decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.7e-105  352.2   0.0   3.2e-105  351.9   0.0    1.1  1  Pyridoxal_deC    Pyridoxal-dependent decarboxylase conserved 
    2.2e-06   26.6   0.0    3.1e-06   26.1   0.0    1.1  1  SepSecS          O-phosphoseryl-tRNA(Sec) selenium transferas
    2.9e-05   23.2   0.0    4.4e-05   22.6   0.0    1.1  1  Aminotran_5      Aminotransferase class-V
      7e-05   22.2   0.0    8.6e-05   22.0   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
     0.0012   18.2   0.4     0.0018   17.7   0.4    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
     0.0074   15.5   0.0      0.011   14.9   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.9   0.0  1.1e-108  3.2e-105       1     374 [.      35     409 ..      35     410 .. 0.97

  Alignments for each domain:
  == domain 1  score: 351.9 bits;  conditional E-value: 1.1e-108
                    TTTTGGGSCSSHHSSHH.HHHHHHHHHHCTGGGS--TTSTTBHCSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--G CS
  Pyridoxal_deC   1 PeylkrlldeaapekaesleqilediekilapgvttwhspefhkllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpe 96 
                    P+ l + l++    + e++ ++l d+  ++ p +t+w++p f+ ++pa +s +s+lgdl+++  +  g+ w+++Pa+tele+v+ldwla llglpe
     KIR60939.1  35 PGALAAALPAGPTAHGEPVAALLADLDALVTPRLTHWQHPGFFGYFPANTSGPSVLGDLVSSGLGVQGMLWASAPACTELETVMLDWLAGLLGLPE 130
                    777788888888999********************************************************************************* PP

                    GGTCC.T-EEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTS.HHHHHCCEEEEEETTS-HHHHHHHHHHT-E...EEEE--BTT.TBB-HHHHHH CS
  Pyridoxal_deC  97 eflek.egggvlqvgssestllallAartkvikemkekgkelkeaeildklvlytsdqahssvekaalvlgvk...lrviplden.gklrgaalek 187
                     f ++  gggv+q ++s +tl+a lAa ++      ++g +++++ +  +  +yts + hss+ekaa+++g++   +rv+ +d++  ++ ++al++
     KIR60939.1 131 RFRSTgPGGGVIQDSASSATLVATLAALHR------ASGGRWRQVGVDRRYRAYTSTEGHSSIEKAARIAGLGgdgVRVVAADPQtLAMDPDALRA 220
                    *****66********************986......5788999999**************************9999******976268999***** PP

                    HHHHHHCTT.EEEEEEEEBS-TTT-BB--HHHHHHHHHHCT-EEEEE-TTGGGGGGSGGGGGGGTTGGGESEEEEECCCCTS--SS-EEEEESSCC CS
  Pyridoxal_deC 188 aieedkekGlipffvvatlGttvlgaFddlkelgdicekydlwlHvDAAyaGsaficpeirhllkgieradSitvnphKlllvlldcsalivkdke 283
                    ai +d ++G++p +vvat+Gtt++ a d + ++g +c++y++wlHvDAAyaG+a +cpe r    g+e+adS ++ phK+ll  +dc a++v d+ 
     KIR60939.1 221 AIRADLAAGDVPAIVVATIGTTSTTAVDPVPQIGAVCAEYGVWLHVDAAYAGAAAVCPELRWSHAGLEYADSYCFDPHKWLLTGFDCDAFWVADSA 316
                    ************************************************************************************************ PP

                    GCHHHH-EEECCCT.TT..TTTSEECCCGSSSSSGHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEECSTTBSSEEEEEE CS
  Pyridoxal_deC 284 alqqalqleaeYLehed..sdvaadlgtkaiplsrrvrilklwfvlralGveglqnqirksvelakyleklirkderfeivaevelglVcFrl 374
                    +l +al++ +e+L+++   s+  +d++++++pl+rr+r+lklwfvlr +Gvegl++++r +v la  +++++r+d rf ++a   + lVcFrl
     KIR60939.1 317 ELVEALTVLPEFLRNAAsdSGAVVDYRDWQVPLGRRFRALKLWFVLRWYGVEGLRAHVRSHVALADRFAARVRADDRFVLAAPHPFSLVCFRL 409
                    **************8777899***********************************************************************8 PP

>> SepSecS  O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0     1e-09   3.1e-06     103     195 ..     175     271 ..     165     280 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1e-09
                 CCEEEEEETCHHH.HHHHCTT-EEEEE-EE.ECTTEEEEHHHHHHHHH..HCCTCCCEEEEEECSSTTTTB----HHHHHHHHHCCT--EEEEGCCC CS
     SepSecS 103 kviwvridekSsl.kavelaGleialvekv.legDelitdvedveeii..ekkreevilavlstlsffaprspDdvkeiakiCaeydvPhlvNgAYa 195
                 + ++   + +Ss+ ka++ aGl    v  v  ++ +l  d+++  ++i  +   ++v+++v++t  +      D+v++i ++Caey+v + v +AYa
  KIR60939.1 175 YRAYTSTEGHSSIeKAARIAGLGGDGVRVVaADPQTLAMDPDALRAAIraDLAAGDVPAIVVATIGTTSTTAVDPVPQIGAVCAEYGVWLHVDAAYA 271
                 56777777777765899*****8776665526999************97555689999**************************************8 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.5e-08   4.4e-05      93     178 ..     178     270 ..     171     276 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.5e-08
                  EETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSC.BEGGGHHHH-......-TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TT CS
  Aminotran_5  93 vteaehhanlvpwqelakrtgakvkvipldeege.ldldelekll......nektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaq 178
                  +t++e h+ +  ++++a   g  v+v+ +d++ + +d+d+l++++       + +++v  t   ++t  ++pv++ig+++ ++g++++vDaa 
   KIR60939.1 178 YTSTEGHSSIEKAARIAGLGGDGVRVVAADPQTLaMDPDALRAAIradlaaGDVPAIVVATIGTTSTTAVDPVPQIGAVCAEYGVWLHVDAAY 270
                  7899999**********************99876267********777765567789999999999999**********************95 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.9e-08   8.6e-05      74     202 ..     177     303 ..     140     458 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.9e-08
                      EEEETT-HHHHSSTTHHHHC..C--EEEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEE CS
  Beta_elim_lyase  74 vivtepahihfdetgaiael..agvklrdlknkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplh 165
                         + ++h     +  ia l   gv+++ ++ +    md+++l+aai+++ a  + +++++ t+ +         ++ + ++ a++ +yg+ lh
       KIR60939.1 177 AYTSTEGHSSIEKAARIAGLggDGVRVVAADPQT-LAMDPDALRAAIRADLAAGDVPAIVVATIGTT----STTAVDPVPQIGAVCAEYGVWLH 265
                      4445557777777777777733455555555555.89************777444444455555544....4789999**************** PP

                      EEETTHHHHHHHHTS-CHHHH.TTSSEEEEESSSTT-- CS
  Beta_elim_lyase 166 lDgARfanaakslgeivkemf.syvDsvtmslkKdlla 202
                      +D+A    aa+  +   +    +y+Ds ++   K ll+
       KIR60939.1 266 VDAAYAGAAAVCPELRWSHAGlEYADSYCFDPHKWLLT 303
                      ****8888887777776666569999999887776665 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.4     6e-07    0.0018      89     183 ..     203     310 ..     183     338 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 6e-07
                      EE-B-TTTSSB-GGGCGGG--TTE.....EEEEEB-GGGB--....-HHHHHHHHHHCT-EEEEE-TT-TT-EETT...EECCCSSSEEEEE-B CS
  DegT_DnrJ_EryC1  89 fvDvdpdtynidpaaieaaitert.....kaIlpVhlyGqva....dmdalkaiaakhglkvieDaAhAlGatykg...kkvGalgdaavfSFy 170
                       v  dp+t+ +dp+a++aai          aI+++ +   +      ++++ a++a++g+++  DaA A  a +          l+ a ++ F 
       KIR60939.1 203 VVAADPQTLAMDPDALRAAIRADLaagdvPAIVVATIGTTSTtavdPVPQIGAVCAEYGVWLHVDAAYAGAAAVCPelrWSHAGLEYADSYCFD 296
                      577899**************998877887888888776543332347899*****************997766554343233345577788888 PP

                      TTSSS.-SSS-EEE CS
  DegT_DnrJ_EryC1 171 ptKnl.ttGeGGav 183
                      p K l t ++  a+
       KIR60939.1 297 PHKWLlTGFDCDAF 310
                      88877676676665 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.7e-06     0.011      97     194 ..     178     274 ..     167     289 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.7e-06
                    EEEESS-THHHHHHHHTTSE...EEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B-.-HHHHHHHHHHHHHTTEEEEEEE CS
  Aminotran_1_2  97 lvpdptyasyknilrlsgge...vvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtva.tleeleklldlakkynlllfvDe 188
                    + ++  ++s+++++r++g+    v+ ++  ++++  +d +al +a++ + +    +  i+v+++   + t+  + +++ ++   + +y+++l vD 
     KIR60939.1 178 YTSTEGHSSIEKAARIAGLGgdgVRVVA-ADPQTLAMDPDALRAAIRADLAAGD-VPAIVVATIGTTSTTAVdPVPQIGAV---CAEYGVWLHVDA 268
                    5667789999999999987545455555.889**************98665555.44555555544333333045677777...************ PP

                    TTTTCB CS
  Aminotran_1_2 189 aYagfv 194
                    aYag +
     KIR60939.1 269 AYAGAA 274
                    ***976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3635.66
//
Query:       KIR60940.1  [L=760]
Description: integrin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-29  100.9   0.0    1.2e-28   99.2   0.0    2.0  1  RGI_lyase  Rhamnogalacturonan I lyases beta-sheet domain
      2e-28   98.6  11.2      2e-28   98.6  11.2    3.5  3  CBM_2      Cellulose binding domain
    1.6e-09   37.7  19.2     0.0011   19.0   2.8    4.5  4  FG-GAP     FG-GAP repeat
    4.7e-05   23.9  25.4      0.044   14.4   0.5    6.0  6  VCBS       Repeat domain in Vibrio, Colwellia, Bradyrhizobium
     0.0017   18.2   0.2       0.44   10.6   0.0    4.0  2  PQQ        PQQ enzyme repeat


Domain annotation for each model (and alignments):
>> RGI_lyase  Rhamnogalacturonan I lyases beta-sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   3.3e-32   1.2e-28       1      82 [.     181     262 ..     181     266 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 3.3e-32
                 EEE-------EEEEETTEEEEE--B-TTS-TT-EEEEEETTEE-CSSSB-SSSEEEETT--TT-EEEEEEEETTEEECE--- CS
   RGI_lyase   1 rqmEkLdRglvAvkteegvfvsWRllgteeeevaFnvYrdgkkinsapitdstnylDakgtasskYtvkavvngkeqeasee 82 
                 +q+E+LdRgl++v++ +g++vsWRllgte+++v+Fn+Yr  +k+n++pit +tnylDa + a s Ytv+avv g+eq+as++
  KIR60940.1 181 KQLENLDRGLISVRSGSGNLVSWRLLGTETSGVSFNLYRGSTKVNASPITGATNYLDAGAAAGSAYTVRAVVGGTEQAASAP 262
                 599***************************************************************************9986 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6  11.2   5.7e-32     2e-28       1     101 []      37     137 ..      37     137 .. 0.96
   2 ?   -0.5   0.0      0.43   1.5e+03      12      36 ..     323     347 ..     317     364 .. 0.84
   3 ?    1.7   0.2     0.089   3.2e+02      35      71 ..     475     510 ..     470     518 .. 0.87

  Alignments for each domain:
  == domain 1  score: 98.6 bits;  conditional E-value: 5.7e-32
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-.SS----S--EETT CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgskt.gsnsaptsftvnG 98 
                 ++++y++ s+W++Gf a vtv+N g+ +ingW ++w+++agq+vtq+Wnatv+qsG +vta+++++N+ + + g+a+fGf++s++ +sn+ p+sf++nG
  KIR60940.1  37 CRVDYKISSQWGGGFGADVTVTNLGD-PINGWALTWSYTAGQQVTQAWNATVTQSGAQVTARDAGYNAALGTNGTANFGFNASWNdSSNPVPASFALNG 134
                 899**********************8.57******************************************************97256789******** PP

                 EE- CS
       CBM_2  99 aaC 101
                 ++C
  KIR60940.1 135 TTC 137
                 **9 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.43
                 SSEEEEEEEEEE-SSS-EES-EEEE CS
       CBM_2  12 etGftasvtvkNsgssaingWtvew 36 
                 ++G+t++v v   + + +  W+v++
  KIR60940.1 323 QSGYTGNVYVDAYTLTGTRLWRVDL 347
                 79*********99999999999976 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.089
                 EEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE- CS
       CBM_2  35 ewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtia 71 
                  w++  +  +t+ W  +  +sGns +a + ++N ++a
  KIR60940.1 475 AWDFR-NGALTKRWTFDSNASGNSAAAGQGNHNLSVA 510
                 58888.6689****************99999998876 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   2.8   3.1e-07    0.0011       4      36 ..     295     332 ..     292     332 .. 0.85
   2 !   13.2   0.6     2e-05     0.072       4      34 ..     359     388 ..     357     389 .. 0.81
   3 !   14.3   1.2   9.3e-06     0.033       5      28 ..     507     531 ..     503     548 .. 0.78
   4 ?   -2.5   0.0       1.7   6.1e+03       2      11 ..     542     551 ..     541     551 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.1e-07
                 SEEEESTSSSSS-EEEEEE.TT....-ETCSTTBEEEE CS
      FG-GAP   4 slavgDvNGDGyaDLavGA.pe....skggaygGaVyv 36 
                  ++vgD++GDG  ++++ + p+    +++++y G Vyv
  KIR60940.1 295 DASVGDLDGDGDYEIVLKWdPSnskdNSQSGYTGNVYV 332
                 689*****************555777788888899998 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2e-05
                 SEEEESTSSSSS-EEEEEETT-ETCSTT.BEE CS
      FG-GAP   4 slavgDvNGDGyaDLavGApeskggayg.GaV 34 
                 +  v D++GDG a++a    +++g   g G+V
  KIR60940.1 359 QFQVYDYDGDGDAEVAMK--TADGTRSGtGQV 388
                 56788*************..866777777887 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 9.3e-06
                 EEEESTSSSSS-EEEEEETT.-ETC CS
      FG-GAP   5 lavgDvNGDGyaDLavGApe.skgg 28 
                 l+v+Dv+ DG ++++ GA++ +++g
  KIR60940.1 507 LSVADVDADGRQEIVYGAATiDDNG 531
                 89***************95553333 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.7
                 TSSEEEESTS CS
      FG-GAP   2 GyslavgDvN 11 
                 G +l vgD++
  KIR60940.1 542 GDALHVGDLD 551
                 67899***98 PP

>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3       1.3   4.5e+03      26      48 ..      49      71 ..      42      99 .. 0.74
   2 !   12.0   0.3     7e-05      0.25      39      60 ..     287     310 ..     267     311 .. 0.72
   3 !   11.9   0.3   7.1e-05      0.25      30      60 ..     340     374 ..     321     375 .. 0.70
   4 !   14.4   0.5   1.2e-05     0.044      26      60 ..     480     521 ..     461     522 .. 0.66
   5 !   12.7   1.0   4.1e-05      0.15       1      41 [.     511     554 ..     511     599 .. 0.78
   6 ?   -0.8   0.0      0.69   2.5e+03      48      60 ..     681     693 ..     630     718 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.3
        VCBS 26 dGtftdvtktslggsgggtgvav 48
                 G + dvt t lg++ +g+++++
  KIR60940.1 49 GGFGADVTVTNLGDPINGWALTW 71
                56666777777777777776654 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 7e-05
        VCBS  39 g..sgggtgvavgDlDgDGdlDll 60 
                 +  ++ ++ + vgDlDgDGd +++
  KIR60940.1 287 EayTYSANDASVGDLDGDGDYEIV 310
                 2334455579**********9987 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 7.1e-05
        VCBS  30 tdvtktslgg....sgggtgvavgDlDgDGdlDll 60 
                 t  + ++lg     +  +t   v D+DgDGd++++
  KIR60940.1 340 TRLWRVDLGRniraGAHYTQFQVYDYDGDGDAEVA 374
                 444444444444446677789***********986 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 1.2e-05
        VCBS  26 dGtftdvtktslgg.......sgggtgvavgDlDgDGdlDll 60 
                 +G +t+ ++ ++++       ++g++++ v+D+D DG+ +++
  KIR60940.1 480 NGALTKRWTFDSNAsgnsaaaGQGNHNLSVADVDADGRQEIV 521
                 555555555433332222444666677*************98 PP

  == domain 5  score: 12.7 bits;  conditional E-value: 4.1e-05
        VCBS   1 DldgDGrlDlvva..n.dgglrvyrnngdGtftdvtktslggsg 41 
                 D+d DGr+++v++  + d++ r+++ +++G++      +l++s 
  KIR60940.1 511 DVDADGRQEIVYGaaTiDDNGRLLHSTNNGHGDALHVGDLDPSR 554
                 9***********98866777888888888877655444444443 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 0.69
        VCBS  48 vgDlDgDGdlDll 60 
                  gD+ gD +++++
  KIR60940.1 681 SGDILGDWREEVI 693
                 5555555555544 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.038   1.4e+02      19      33 ..     338     352 ..     326     355 .. 0.79
   2 !   10.6   0.0   0.00012      0.44      16      31 ..     575     590 ..     572     593 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.038
                 TCCEEEEEESSSCGS CS
         PQQ  19 TGkvlWrfktggpvl 33 
                 TG+ lWr+++g +++
  KIR60940.1 338 TGTRLWRVDLGRNIR 352
                 6*******9987665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00012
                 ETTTCCEEEEEESSSC CS
         PQQ  16 DadTGkvlWrfktggp 31 
                 Da+TG+v+W+++++g+
  KIR60940.1 575 DARTGQVIWSTPASGD 590
                 9***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5446.41
//
Query:       KIR60941.1  [L=336]
Description: FMN-linked alkanal monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-37  127.9  13.0    1.2e-36  126.8  13.0    1.5  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8  13.0   6.5e-41   1.2e-36      14     314 .]      17     304 ..       5     304 .. 0.80

  Alignments for each domain:
  == domain 1  score: 126.8 bits;  conditional E-value: 6.5e-41
  Bac_luciferase  14 algaasaslrylvelaraaEelGfdavwvaehhggpgga.ldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhlsgGRfglglgt 107
                     +++a+ ++lr++ +lar+aEelG+ ++wvaehh++p  a + + +l+a+laa+T++irlg++ ++l+++ P+v+A+q+ tL+ l +GR++lg+g+
      KIR60941.1  17 GSTAG-EALRHTTDLARRAEELGYRRFWVAEHHNMPAIAsSAPAVLIAHLAAHTSTIRLGSGGVMLPNHAPLVVAEQFGTLEALHPGRIDLGIGR 110
                     34444.59***************************9999******************************************************** PP

  Bac_luciferase 108 ggpaveerrfGvdhderyarlrEfvev..lrrlwrgeevdfeGeffsvkgalllprpgqgpiP.vyvaaaspaglelaarhadglllag.eppee 198
                        + + ++        ++r+ E + +  + r +++    f Ge+  +  +  +p    g++P v++ ++s  +++la+  + ++ +a  ++ ++
      KIR60941.1 111 APGTDQVTA------LALRRTMEGLSAegFPRELADLMGYFTGEH--AGPIVATPGR--GEQPqVWLLGSSGFSAQLAGLLGLPFSFAHhFSAQH 195
                     999999555......567777776654223344424444899999..3334444444..45688********************99988899999 PP

  Bac_luciferase 199 aaelierlragaaeagrdpa...dirvgisltvivadteeeAraea....raliagldfyaldsegagreaeaaeiqeeedanlwagaadavpde 286
                        +++ +r+    + r++    +++ ++++  i+a+t+e A+  a    +a++      +l s +++ +a    +  + ++   a+++ +v   
      KIR60941.1 196 TLPALALYRQ----HFRPSRwlsEPYAMVAVNAICAETDERAQWLAgpsaLAFL------KLRSGRPQPLAS--PEEAAAYPYTAAEREFVV--- 275
                     9999999998....777655677***********************88555555......666666666644..444455555555555555... PP

  Bac_luciferase 287 lvaatalvGtpeqvaerlaa.yaeagvde 314
                     + ++  + G+pe+v  +l + +a++g+de
      KIR60941.1 276 QRREGQAMGSPETVGRQLTElLARTGADE 304
                     6689999*************9*****985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2462.18
//
Query:       KIR60942.1  [L=531]
Description: multidrug MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-46  157.2  58.7    5.1e-46  157.2  58.7    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        4.1    6.9   5.8       0.42   10.2   1.0    1.7  2  PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltra


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.2  58.7   5.6e-50   5.1e-46       1     352 [.      10     402 ..      10     403 .. 0.88
   2 !    5.2   1.3   0.00091       8.1     146     177 ..     461     492 ..     404     530 .. 0.74

  Alignments for each domain:
  == domain 1  score: 157.2 bits;  conditional E-value: 5.6e-50
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 ++l++f+   + +++++alp  + +dl +s  ++++++ +yal+ a+++l +G+++dr+G+r ++l+g+++fal++l++ +a++   l+++r+ qGlga
  KIR60942.1  10 VCLGTFMLLVDVTVVTVALP-DMVRDLDASFGAVQWVVDAYALALAALVLGAGAVADRVGHRVTYLAGVVVFALSSLACGLAPGAQGLVAARAAQGLGA 107
                 589*****************.******************************************************666666777778************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 +a+f++  al+   +++++rg a+g+++a ++++a++gp+lggll++ ++W+++f+++ +vs++a+ l++  lp+ +p+ +   ++             
  KIR60942.1 108 AAMFATTFALLDGAYAGRDRGAAYGVWGAVSGASAAVGPVLGGLLTEGVSWHWIFFVNLPVSAVALGLGARTLPAGRPAVGGRVDVGGVvvfavaagca 206
                 *****************************************************************888888888888888888888888********** PP

       MFS_1 189 ..................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllall 253
                                                   ++++++p+++ + +l+ + ++  +l+a ll +f+ ++ l+++ ++lq+vlgl+  + ag l +l+
  KIR60942.1 207 tyaliraaeagwsdavvwaaagaaavllagfavvEWRVRQPMFD-LALLRDRAFVA-VLLAGLLLTFAAFAPLAYSMIWLQSVLGLG-PVGAG-LTGLP 301
                 *********************************99999999999.55555555444.55555555569999****************.33333.45555 PP

       MFS_1 254 alvgailallagrlsdr.lgrrrrlllallllllaalglallavtssavllllvlvl....iGfglgfvfpsllalasdlappeeagtasglfntagsl 347
                 + v+   a++++++s r l  rr+ l+++++ll++ +g a++av    ++++ +lv     iG+g+g+++p+l a+a++l+p+ + g+a+g++nt+++l
  KIR60942.1 302 MSVV---AFVVSAVSGRaLHGRRPGLVIGGGLLCVGVGSAVTAVLVRGAAGWPALVPggavIGVGVGLATPALGAVAMSLVPAARGGMAAGAVNTCRQL 397
                 5554...4444555533355689**********************8888888755556666************************************** PP

       MFS_1 348 ggalg 352
                 g a+g
  KIR60942.1 398 GFAFG 402
                 *9998 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.00091
       MFS_1 146 sslgWravfyilaivsllafvlfllllpeepp 177
                 + +g ra+f ++a+v++ a++l+l ll++ + 
  KIR60942.1 461 AVGGVRASFAVAAGVGIGAGLLVLGLLRAGAG 492
                 35789**************9997777755444 PP

>> PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.3      0.51   4.6e+03     125     144 ..      49      68 ..      42      88 .. 0.58
   2 ?   10.2   1.0   4.7e-05      0.42     130     188 ..     229     286 ..     222     289 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.51
    PMT_4TMC 125 YlpAllfailllaalldfll 144
                 Y  Al + +l ++a+ d + 
  KIR60942.1  49 YALALAALVLGAGAVADRVG 68 
                 66677777777777777764 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 4.7e-05
    PMT_4TMC 130 lfailllaalldfllkslkkslkkkklvklivvvvllvlviavFiffspltyGlpgtse 188
                  +a+ll+++ +  + + ++   +   l  +++v+vll+ ++++F  f+pl+y + ++++
  KIR60942.1 229 AAAVLLAGFAVVEW-RVRQPMFDLALLRDRAFVAVLLAGLLLTFAAFAPLAYSMIWLQS 286
                 55667777655555.2344444444678899***********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3609.47
//
Query:       KIR60943.1  [L=159]
Description: AsnC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-15   56.4   0.2    3.6e-15   55.7   0.2    1.3  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    8.1e-15   54.4   1.8    1.4e-14   53.6   1.8    1.4  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    1.7e-13   49.9   0.1    2.4e-13   49.4   0.1    1.3  1  HTH_24          Winged helix-turn-helix DNA-binding
    0.00095   19.2   0.3     0.0023   18.0   0.3    1.6  1  HTH_20          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.2   8.1e-19   3.6e-15       1      75 []      80     154 ..      80     154 .. 0.96

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 8.1e-19
                     EEEEE-GGGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEEE CS
  AsnC_trans_reg   1 vlvslepghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivlet 75 
                     v v+l+ ++++++++f+++  +lp Vv++++v+G  dy+l+v++++ +al++f+ ++la  p v++t+ts+++e+
      KIR60943.1  80 VSVRLTAHERAAVDAFRARSVRLPGVVSVFHVAGAEDYVLHVRAASGDALRDFVLDHLAVDPAVQHTQTSLIFEQ 154
                     689999566***************************************************************986 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   1.8   3.1e-18   1.4e-14       1      42 []      14      55 ..      14      55 .. 0.98

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 3.1e-18
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   LD++Dr+IL +L +d+R+++ +LAervG+++st+l R r+L+
     KIR60943.1 14 LDDVDRAILTELAADGRLPNNALAERVGVAASTCLTRTRALR 55
                   8***************************************97 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.1   5.5e-17   2.4e-13       1      48 []      14      61 ..      14      61 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 5.5e-17
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                ld+ dr+IL +L +++r++++ LAer+g+  st+++r + L e G I+
  KIR60943.1 14 LDDVDRAILTELAADGRLPNNALAERVGVAASTCLTRTRALRECGAIR 61
                79*******************************************886 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.3   5.1e-07    0.0023       8      55 ..      14      61 ..      10      62 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 5.1e-07
                S-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
      HTH_20  8 ahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLve 55
                ++ v r+il +La ++ l  ++laer++++ +t+  + r+L+e g+++
  KIR60943.1 14 LDDVDRAILTELAADGRLPNNALAERVGVAASTCLTRTRALRECGAIR 61
                56899*******999999*************************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1341.22
//
Query:       KIR60944.1  [L=392]
Description: cystathionine gamma-synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-94  316.9   0.0    1.5e-94  316.7   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    0.00031   20.2   2.9    0.00068   19.0   2.9    1.5  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.7   0.0   1.7e-98   1.5e-94       1     381 [.      11     388 ..      11     389 .. 0.93

  Alignments for each domain:
  == domain 1  score: 316.7 bits;  conditional E-value: 1.7e-98
                      HHHHHHTTTTCHTTTTBSS--B---SBBBESSHHHH..........CTTCSSS.-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHH CS
  Cys_Met_Meta_PP   1 eTllvhagqekdeqtgavavpiyltstykfkdvdea..........fageekg.yeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaa 83 
                      +T++vhag+ + ++ g +a+pi l++t    +v ++           +    g  +Y+R+ npt+  +e ++a+Le++ aa+a++sGmaA++a+
       KIR60944.1  11 DTAAVHAGRADLTALGVHAPPIDLSTTNPLPSVTDGgeayetlatgGTLPPGGsAVYQRLWNPTVARFETALAELEDTPAAVAFASGMAALTAT 104
                      799*******999***************999999888899998865444455579*************************************** PP

                      HHTTS-TTE.EEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTT CS
  Cys_Met_Meta_PP  84 ilallkaGd.eivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntf 176
                      +la    G+ ++v+ + lYggt ++l + l   g +v+    + ++++++ai++ t lv +Etp+np+l++vDi+++a++a   g++++vDnt+
       KIR60944.1 105 LLAATGDGNrHVVAVRPLYGGTDHVLATGLL--GTDVT---WARPDQVAAAIRPDTALVVVETPANPTLDLVDIAALAAAA--GGTPLLVDNTV 191
                      *9999998647999*********99987664..44444...456789***************************9988765..679******** PP

                      THTTTS-GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTS CS
  Cys_Met_Meta_PP 177 aspllqrplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekh 270
                      a+p+lqrp ++ga +v+hSaTK +gGh+dv+aGv+++++  +++ +l+++   +Ga+l p  a+ll+rGl+TL lR++++++ A k+A +L++h
       KIR60944.1 192 ATPVLQRPARHGAALVLHSATKSIGGHGDVLAGVVACDE--DWAVRLRQVRALTGAILHPLGAYLLHRGLQTLPLRVRAQSAGAEKLAAWLARH 283
                      ************************************776..9**************************************************** PP

                      TTEEEEE-TTSTTSTTHHHHHHHSSSG-SEEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE CS
  Cys_Met_Meta_PP 271 pkvekvyYpglpshpqhelakkqlkgaggvlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRls 364
                      p+v +v +pgl +  +  l+ +q++g+g++l+Fe+++++ +a+++  +++l+++a+slGgv++l+++pas th+ ++ ++r a g    l+Rls
       KIR60944.1 284 PAVDRVHHPGLDDPAG--LVGRQMTGTGSLLAFEVRGGAPAAATVAAACRLITHAVSLGGVDTLVQHPASLTHRPVTGDARPAGG----LLRLS 371
                      ***********98775..89*******************99****************************************9885....6**** PP

                      --SS-HHHHHHHHHHHH CS
  Cys_Met_Meta_PP 365 vGiEdvdDliaDlkqal 381
                      vG+Ed +Dl aDl+qal
       KIR60944.1 372 VGLEDPEDLRADLEQAL 388
                      ****************9 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   2.9   7.6e-08   0.00068      22     144 ..      72     188 ..      63     222 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7.6e-08
                      SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEEE CS
  DegT_DnrJ_EryC1  22 gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitertkaI 115
                      +p+v++FE+a+a+   +  a+a++sG aAl  +L a   + ++ V+ +   + +t   vl +g+     Dv+       p++++aai + t a 
       KIR60944.1  72 NPTVARFETALAELEDTPAAVAFASGMAALTATLLAATGDGNRHVVAVRPLYGGT-DHVLATGLLGT--DVT----WARPDQVAAAIRPDT-AL 157
                      899*****************************99996555466666666667666.55777887553..443....458999999999999.56 PP

                      EEB-GGGB--.-HHHHHHHHHHC.T-EEEEE CS
  DegT_DnrJ_EryC1 116 lpVhlyGqva.dmdalkaiaakh.glkvieD 144
                      ++V++  ++  d+  + a+aa+  g +++ D
       KIR60944.1 158 VVVETPANPTlDLVDIAALAAAAgGTPLLVD 188
                      6677777777799999999877624566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2818.34
//
Query:       KIR60945.1  [L=249]
Description: hypothetical protein TK50_24355 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-05   22.4   0.3    0.00015   21.5   0.3    1.6  1  HTH_23        Homeodomain-like domain
    0.00037   20.4   0.3      0.001   19.1   0.3    1.8  1  HTH_29        Winged helix-turn helix
    0.00059   19.9   0.4     0.0015   18.6   0.4    1.6  1  HTH_28        Helix-turn-helix domain
    0.00065   19.5   0.1     0.0014   18.5   0.1    1.6  1  Terminase_5   Putative ATPase subunit of terminase (gpP-like)
      0.004   17.4   0.0        1.7    9.0   0.0    2.3  2  LAGLIDADG_3   LAGLIDADG-like domain
  ------ inclusion threshold ------
      0.015   14.9   0.0      0.028   14.1   0.0    1.5  1  Sigma70_r4_2  Sigma-70, region 4
      0.023   14.7   0.0      0.033   14.2   0.0    1.2  1  DUF1804       Protein of unknown function (DUF1804)
       0.03   14.4   0.0      0.049   13.7   0.0    1.3  1  HTH_3         Helix-turn-helix
      0.041   13.7   0.0      0.077   12.8   0.0    1.4  1  HTH_8         Bacterial regulatory protein, Fis family
       0.05   13.9   0.0      0.084   13.2   0.0    1.4  1  HTH_Tnp_1     Transposase
       0.15   12.1   0.0       0.29   11.3   0.0    1.4  1  MerR_1        MerR HTH family regulatory protein


Domain annotation for each model (and alignments):
>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.3   9.2e-08   0.00015       5      39 ..       5      39 ..       1      52 [. 0.85

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 9.2e-08
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlk 39
                ++R+r+  l++ G+s++e+Ar  g ++ Tv++w +
  KIR60945.1  5 EIRARVRALHLSGWSIAEAARSVGLPYTTVRHWCR 39
                678888899999*********************54 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.3   6.2e-07     0.001       1      33 [.       7      38 ..       7      52 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 6.2e-07
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwl 33
                Ra++ +l+  G+s ++++A+ +gl ++tv++w 
  KIR60945.1  7 RARVRALHLSGWS-IAEAARSVGLPYTTVRHWC 38
                788889******8.******************5 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.4   9.1e-07    0.0015       7      34 ..      12      39 ..       7      43 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.1e-07
      HTH_28  7 kllaaGhsvreaArelgisrrtvyrWik 34
                 l ++G s++eaAr +g+ ++tv+ W++
  KIR60945.1 12 ALHLSGWSIAEAARSVGLPYTTVRHWCR 39
                46679*********************98 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   8.3e-07    0.0014       1      35 [.       5      39 ..       5      51 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.3e-07
  Terminase_5  1 dvRrqArlLYwqGyrvaeIAeelglkeatVysWkk 35
                 ++R + r+L + G+++ae A+ +gl   tV  W++
   KIR60945.1  5 EIRARVRALHLSGWSIAEAARSVGLPYTTVRHWCR 39
                 678999***************************96 PP

>> LAGLIDADG_3  LAGLIDADG-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0011       1.7       5      39 ..      70     105 ..      68     125 .. 0.83
   2 !    6.3   0.0    0.0075        12       6      21 ..     170     185 ..     168     221 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
                  HHHHHHHHHCCECCECSTTTTS.EEEEES-HHHHHH CS
  LAGLIDADG_3   5 afLrGlfdaDGsvskskkkgvs.isltssskelled 39 
                  a+L Gl+ +DG+ +++ +  v  ++ t+s   l++ 
   KIR60945.1  70 AYLLGLYLGDGHLVTTARIPVLrVYCTTSWPGLIDA 105
                  89**************99877788888877777665 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0075
                  HHHHHHHHCCECCECS CS
  LAGLIDADG_3   6 fLrGlfdaDGsvsksk 21 
                  f rGlf +DG+ + ++
   KIR60945.1 170 FARGLFHSDGCRVANR 185
                  779********98887 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.7e-05     0.028      23      46 ..      14      37 ..       3      39 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-05
                  HTS---HHHHHHHHT--HHHHHHH CS
  Sigma70_r4_2 23 yleglsykEIAellgisegtVksr 46
                  +l g+s++E+A+  g++ +tV+++
    KIR60945.1 14 HLSGWSIAEAARSVGLPYTTVRHW 37
                  699******************986 PP

>> DUF1804  Protein of unknown function (DUF1804)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     2e-05     0.033       3      42 ..       2      40 ..       1      49 [. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
     DUF1804  3 hdeevrkavRsaYvferlsleeaAkkagvseaTarrwkre 42
                +++e r +vR+  ++   s++eaA ++g++++T+r w r 
  KIR60945.1  2 YPPEIRARVRALHLSG-WSIAEAARSVGLPYTTVRHWCRD 40
                7899**********65.5*******************765 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     3e-05     0.049       8      33 ..      16      41 ..       8      50 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-05
                TTHHHHHHHHHHTSSHHHHHHHHTTS CS
       HTH_3  8 lglsqeeLAeklGvsrstisriEnGe 33
                 g+s++e+A+ +G++++t++++ +++
  KIR60945.1 16 SGWSIAEAARSVGLPYTTVRHWCRDR 41
                69********************9984 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.7e-05     0.077      12      36 ..      11      35 ..      10      36 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.7e-05
                HHHHHTTT-HHHHHHHHTS-HHHHH CS
       HTH_8 12 aALertgGnkskAArlLGisRrtLy 36
                 AL  +g+ +++AAr  G+  +t++
  KIR60945.1 11 RALHLSGWSIAEAARSVGLPYTTVR 35
                58999******************87 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.2e-05     0.084       7      51 ..       2      45 ..       1      61 [. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.2e-05
   HTH_Tnp_1  7 wsdefKariVreslepgksvsevArrhgvspnqLykWrrqyrege 51
                +++e +ar+ ++   +g s++e Ar+ g+ + + ++W r   e++
  KIR60945.1  2 YPPEIRARVRALH-LSGWSIAEAARSVGLPYTTVRHWCRDRPESR 45
                7777777766666.77*********************99854444 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00018      0.29       2      20 ..      19      37 ..      18      41 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
                EHHHHHHHHTS-HHHHHHH CS
      MerR_1  2 sigevakilgvtthtlryw 20
                si e+a+ +g+++ t+r+w
  KIR60945.1 19 SIAEAARSVGLPYTTVRHW 37
                89***************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1873.17
//
Query:       KIR60946.1  [L=206]
Description: Fis family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-28   99.5   0.2    2.3e-28   98.6   0.2    1.5  1  Response_reg  Response regulator receiver domain
    2.2e-21   75.5   1.7    8.4e-21   73.6   0.2    2.5  2  ANTAR         ANTAR domain
  ------ inclusion threshold ------
      0.023   15.1   0.3       0.23   11.9   0.1    2.5  2  3HCDH_RFF     3-hydroxybutyryl-CoA dehydrogenase reduced Ross


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   0.2   3.9e-32   2.3e-28       1     111 [.      13     122 ..      13     123 .. 0.98

  Alignments for each domain:
  == domain 1  score: 98.6 bits;  conditional E-value: 3.9e-32
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vli++D+ l+r  l+++l eegye+v+ea dg+ a++l++e k+dl++lDi+mp mdGl ++++i       pviilta s+ + +++a  aga+ +
    KIR60946.1  13 VLIAEDEALIRLDLAEMLVEEGYEVVGEAGDGETAVRLAEELKPDLVILDIKMPIMDGLAAAERIAGAR-IAPVIILTAFSQRDLVERARAAGAMAY 108
                   8****************************************************************9988.89************************* PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   l+Kpf++++L+ a+
    KIR60946.1 109 LVKPFQKSDLVPAV 122
                   **********9887 PP

>> ANTAR  ANTAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.14   8.6e+02       6      17 ..      90     101 ..      88     106 .. 0.82
   2 !   73.6   0.2   1.4e-24   8.4e-21       3      54 .]     142     193 ..     140     193 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHH CS
       ANTAR   6 aleeRklieqAk 17 
                 a   R+l+e+A 
  KIR60946.1  90 AFSQRDLVERAR 101
                 667899999995 PP

  == domain 2  score: 73.6 bits;  conditional E-value: 1.4e-24
                 HHHHHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHCTTTS-HHHHHHHH- CS
       ANTAR   3 LeealeeRklieqAkgiLmeryglsedeAfrlLrklSmdsnvklrevAeavv 54 
                 L+++le Rk++e+Akg+Lm+ yg++e++Af+++++++md++++++evAe+++
  KIR60946.1 142 LTDRLEIRKTVERAKGALMTTYGMTEPQAFKWIQRTAMDHRMTMKEVAERIL 193
                 7899**********************************************96 PP

>> 3HCDH_RFF  3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.8e-05      0.23       5      27 ..      43      65 ..      41      83 .. 0.77
   2 ?    1.2   0.2     0.086   5.1e+02       5      36 ..      69     107 ..      66     111 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.8e-05
   3HCDH_RFF  5 dGrtAtqraaeegrpvvlfDlal 27
                dG+tA  +a+e++ ++v++D  +
  KIR60946.1 43 DGETAVRLAEELKPDLVILDIKM 65
                9*******************755 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.086
   3HCDH_RFF   5 dGrtAtqraaeeg.rpvvlf......DlaldyraatrlA 36 
                 dG  A++r a  + +pv+++      Dl+ ++raa+++A
  KIR60946.1  69 DGLAAAERIAGARiAPVIILtafsqrDLVERARAAGAMA 107
                 889999999988888888764444446666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1576.57
//
Query:       KIR60947.1  [L=389]
Description: transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-49  167.4  11.4    7.4e-49  167.2  11.4    1.0  1  Peripla_BP_6  Periplasmic binding protein
    1.5e-17   63.8   0.0    1.9e-17   63.4   0.0    1.1  1  ANF_receptor  Receptor family ligand binding region
      2e-05   23.8   0.0    3.2e-05   23.1   0.0    1.4  1  Peripla_BP_5  Periplasmic binding protein domain


Domain annotation for each model (and alignments):
>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.2  11.4   1.2e-52   7.4e-49       2     332 ..      43     366 ..      42     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: 167.2 bits;  conditional E-value: 1.2e-52
                   EEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEEE CS
  Peripla_BP_6   2 ikiGlltplsGpyassgksllagaqaafeeiNaaGGinGrkielverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvig 98 
                   +kiG+++pl+G++a +g+ +++g+++a+++ N++    + k++l e+D ++dp++a + a+++v + +v ++vgp +s+  + + ++++++g+p+i+
    KIR60947.1  43 LKIGFFGPLTGDAAGLGIHMRNGTKLAIDQYNKDN--ADCKVNLAEYDSQGDPAKAPALAQQAVGDTKVVGIVGPAFSGESEVADPIFDEAGLPIIT 137
                   69*******************************96..699********************************************************* PP

                   SS-HHCCTTSTT..EEESS-.-HHHHHHHHHHHHHHHTTSCEEEEEEESSHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHHHHHHHHTTT-S CS
  Peripla_BP_6  99 pagltgekcspy..vfslgp.sysaqasalveylakelggkkvalvyadyafgregiaalkaaakaaGgevvgeepvplgttdfsaqvlqikaagad 192
                   p+++++   + +  +f+ g  ++ +q+ a+++y+++ l++ kv++v +++a+g+ +++ +k+++     +v ge +v++ +t+fsa+v++i  +ga 
    KIR60947.1 138 PSATRPSLSTKNwkIFHRGVgNDTSQGPAAGRYIKNVLKAEKVYVVDDQSAYGAGLVDEVKKVLG----TVAGEDKVQVKQTNFSAVVTKIVGSGAT 230
                   **999863333336998865377799*************************************96....9*************************** PP

                   EEEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHHHHHHHHHHHHTTEEEEESCSTCCCSHHHHHHHHHHHHHHTTGGC--HHHHHHHHHHHHH CS
  Peripla_BP_6 193 avllagtgadlaallkaaaeaGldakrillvswsgseedlkalggeaaegvlavtpyfpdldnpavrafvaayeaayggapppsqfaaggyiaadll 289
                   +++++g+ + +  llk+++ aG+++ ++++++   +++ +k +g + aeg++++ p +p+  ++a   fva+y+aa+  a  p ++a   y+ + ++
    KIR60947.1 231 VLFFGGYYTEAGLLLKQLKGAGWKGTMVAGDG-VNDANFIKVAGQQVAEGTVLTCPCAPA--TAAKGSFVADYKAAFENA-EPGTYADVSYDITKIF 323
                   ************************96555544.46777788899999*********9998..689999**********97.8*************** PP

                   HHHHHCCTHCCHHHHHHHHHHS-.BECCCTCCBEECTTSBEE-- CS
  Peripla_BP_6 290 lealkaagsltreavraaleslg.fdgllgplkftaedhqasrp 332
                   le++ka g+ tr+++ a  +s+    +++g  + ++ ++++  +
    KIR60947.1 324 LEGIKA-GKSTRADLLAFVKSYNkAGTATGVTYKFESNGELDPA 366
                   *****9.99************99899999988888888887655 PP

>> ANF_receptor  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   3.2e-21   1.9e-17       3     352 ..      63     375 ..      61     377 .. 0.77

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 3.2e-21
                   HHHHHHHHHHHHT-TTSSTTEEEEEEEEE-TT-HHHHHHHHHHHCCC.CEEEEEE-SSHHHHHHHHHHHCCTT-EEEESS---GGGG-TTTTTTEEE CS
  ANF_receptor   3 leAmklAveeinsdpnllpgiklgyeiidtccdfslaleaaldflkg.kvvaviGpssssvsdavaslanlfkiPvisygstspelsdknryptflr 98 
                    +  klA+++ n+d+    + k+++   d++ d+++a++ a++ + + kvv+++Gp+ s++s+++  + +++ +P+i++++t+p+ls kn  + f r
    KIR60947.1  63 RNGTKLAIDQYNKDN---ADCKVNLAEYDSQGDPAKAPALAQQAVGDtKVVGIVGPAFSGESEVADPIFDEAGLPIITPSATRPSLSTKNW-KIFHR 155
                   56789*********4...566899999*******************868***************************************998.9**** PP

                   SS--CHHHHHHHHHHHHHTT--EEEEEEESS.HHHHHHHHHHHH....HHHHTT-EEEEEEEESTCHHHCHHHHHHHHHHTTT--EEEEEE-HHHHH CS
  ANF_receptor  99 tvpsdtsqaqAivdilkhfgWkkvaliysdd.dygesglqalee....eleergicvalkekipessnddevvrkllkeikskarvivlfcssedar 190
                    v +dtsq+ A  + +k+    + +++++d+ +yg ++++++++     ++e+ ++v+       ++n++ vv+k+    +s a v ++  + ++a 
    KIR60947.1 156 GVGNDTSQGPAAGRYIKNVLKAEKVYVVDDQsAYGAGLVDEVKKvlgtVAGEDKVQVK-------QTNFSAVVTKIV---GSGATVLFFGGYYTEAG 242
                   *****************6655555555555549***********55444444444444.......447779999997...9998777777777**** PP

                   HHHHHHHHTTS-STTEEEEETCHCCCECTTS-CC..HHHHHTT-EEEEE--B-HHHHHHHHHST--CCCSSSTCCGSTTCCHHHHH...HHHHHHHH CS
  ANF_receptor 191 ellkaarrlgltgeeyvwiasdawtsslvldkpeltgleaaegvlgfrlkdpnspkfsefldkreklsdekqnyenegkeqisyqaalmYdaVylla 287
                    llk+ + +g  g   + +a d++ ++  ++   + g+++aeg++  +   p  +   +f+      +d+k+  en+++  ++    + Yd + ++ 
    KIR60947.1 243 LLLKQLKGAGWKG---TMVAGDGVNDANFIK---VAGQQVAEGTVLTCPCAPATAAKGSFV------ADYKAAFENAEPGTYA--DVS-YDITKIFL 324
                   ***********99...566666655555555...558899999999999999999999999......4444444444444333..222.99999999 PP

                   HHHHHHHCHHSSSHCCB-HHHHCCHHHHHHHHHHHT-EEEET.TSC.EEB-TTSBBE.-EEEEEEEEC CS
  ANF_receptor 288 eAlnkllrkkkpgralscntlkpweggqkllrylrnvnfeGl.tGd.vkfdengdrv.ptydilnlqg 352
                   e+++  ++                  +++ll  ++  n  G  tG  +kf +ng++  +++ ++++++
    KIR60947.1 325 EGIKAGKS-----------------TRADLLAFVKSYNKAGTaTGVtYKFESNGELDpAQVLVWAFKV 375
                   99998882.................2333333555555555445666888888888888888887776 PP

>> Peripla_BP_5  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   5.4e-09   3.2e-05       2     293 ..      44     328 ..      43     360 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 5.4e-09
  Peripla_BP_5   2 kvGvLhSlsGtmaisekslkdaallaieeinaagGvlgrkieavvvdpasdwelfaekaeklieedkvevvfGcwtSasRkavlpvveelnalLfYp 98 
                   k+G +  l+G  a    ++ ++++lai++ n++   +  k++   +d+++d+++  + a++ + + kv  ++G   S   +   p+++e    ++ p
    KIR60947.1  44 KIGFFGPLTGDAAGLGIHMRNGTKLAIDQYNKDN--ADCKVNLAEYDSQGDPAKAPALAQQAVGDTKVVGIVGPAFSGESEVADPIFDEAGLPIITP 138
                   8999999**************************9..799****************************************************99**** PP

  Peripla_BP_5  99 vqYEGeEsskn..viYtGaapnqqaipav.dyllselgakrvflvGsdyvypretnrilkallkakggevvgeeYlplgssdvqkivakikkakpdv 192
                          s kn  ++  G   +    pa+ +y+ + l a++v++v  +  y         + +k+  g+v ge+ +++++++++++v+ki   +++v
    KIR60947.1 139 SATRPSLSTKNwkIFHRGVGNDTSQGPAAgRYIKNVLKAEKVYVVDDQSAYGAGL----VDEVKKVLGTVAGEDKVQVKQTNFSAVVTKIVGSGATV 231
                   999999888877699999999887777653799888999**********999765....455666668999999*******************9999 PP

  Peripla_BP_5 193 vlstinGdsnvafykelkeagikaekipvvslsvaeee.laaidaealvGhlaawnYfqsvdtpenkafvakfkarvgedrvtndpmeaayiqvklw 288
                   ++     +++  + k+lk ag k +   v+   v +++ ++  ++++++G + + +   + +t++  +fva++ka +++ +   + +  +y  +k++
    KIR60947.1 232 LFFGGYYTEAGLLLKQLKGAGWKGT--MVAGDGVNDANfIKVAGQQVAEGTVLTCPC--APATAAKGSFVADYKAAFENAEPG-TYADVSYDITKIF 323
                   9877777777778888888877644..456666666552445566777777776664..445666777777777777765543.3445555555555 PP

  Peripla_BP_5 289 aqAve 293
                    + ++
    KIR60947.1 324 LEGIK 328
                   55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2911.69
//
Query:       KIR60948.1  [L=316]
Description: branched-chain amino acid ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-42  144.4  35.9    4.4e-42  144.1  35.9    1.0  1  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
       0.18   11.8   0.3       0.18   11.8   0.3    2.4  3  DAP10         DAP10 membrane protein
        1.4    8.4  14.8      0.048   13.2   6.2    2.5  2  DUF1576       Protein of unknown function (DUF1576)
        3.3    8.0   4.6         34    4.7   0.1    3.5  3  Sid-5         Sid-5 family


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.1  35.9   9.8e-46   4.4e-42       3     268 .]      15     299 ..      13     299 .. 0.86

  Alignments for each domain:
  == domain 1  score: 144.1 bits;  conditional E-value: 9.8e-46
  BPD_transp_2   3 lnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl..........lllallvallvgaavglllgllvlrlkvdel.... 85 
                   + +l ++ai+a++AlG++lv+g++++in++h++++++G ++a++   +l+            l+lal+++l+v+a++ +++++ v  + +++l    
    KIR60948.1  15 ITGLEQGAIYALVALGYTLVYGVLRLINFAHSEVFMVGTFTALWTWEALGYDqnspspalgpLILALVAGLVVAAVASAATAVTVELVAYRPLrrrn 111
                   57899*********************************9999999998887789********99999999999999999999999999999999988 PP

  BPD_transp_2  86 ......iitllllsvlvgltlllltgitsgvkgqssvkellgfagallsflsaviv......llalllvlavllllrrtrfGralravgeneeaara 170
                         +    ++ + + ++l     +++ +  + +++ l+ ++ a+  f+ av +       ++l++++ +  +++r+r+Gr +rav+++ ++a++
    KIR60948.1 112 applafL----ITAIGASFVL-AESFGIGTSRAPFGMPVLIPSETAFTVFGAAVTNiqllilGVTLVMMVGLDQFVNRSRLGRGIRAVAQDADTAAL 203
                   6643332....3333333333.3444666666666777777777777777766666998887888999999999*********************** PP

  BPD_transp_2 171 lGinvkrvklltfvisgalAglaGallalllgsippnigvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgiptelarvllgallilv 267
                   +G+n +rv+ll+fv++g++Ag+a++l  +++g  + n+g+ +g++a+aa+vlGg+g+l+g+++G+l++gv+++ +  l+g   +++++  ++lli++
    KIR60948.1 204 MGVNKNRVILLVFVLGGLMAGVAALLWNVRYGYTKFNVGFLIGLKAFAAAVLGGIGNLRGALLGGLLLGVAENYAAGLFGG--DWKDFTGFVLLIVL 298
                   *************************************************************************88888866..9**99999999987 PP

  BPD_transp_2 268 l 268
                   l
    KIR60948.1 299 L 299
                   6 PP

>> DAP10  DAP10 membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   4.1e-05      0.18      27      63 ..      73     109 ..      62     114 .. 0.77
   2 ?   -2.3   0.2         1   4.6e+03      41      58 ..     158     175 ..     150     178 .. 0.76
   3 ?   -2.9   0.3       1.5   6.9e+03      26      40 ..     256     270 ..     242     276 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.1e-05
       DAP10  27 GcGplslpllaGlvaadavvsllivgvvfvcarlrsr 63 
                   Gpl l l+aGlv a    +   v+v +v  r+ +r
  KIR60948.1  73 ALGPLILALVAGLVVAAVASAATAVTVELVAYRPLRR 109
                 469***********99666666778888888886544 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1
       DAP10  41 aadavvsllivgvvfvca 58 
                 aa + + lli+gv +v +
  KIR60948.1 158 AAVTNIQLLILGVTLVMM 175
                 555667889999988765 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.5
       DAP10  26 sGcGplslpllaGlv 40 
                  G G+l   ll Gl+
  KIR60948.1 256 GGIGNLRGALLGGLL 270
                 466777777777765 PP

>> DUF1576  Protein of unknown function (DUF1576)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   1.3       0.2     9e+02     127     149 ..      74      96 ..      23     104 .. 0.63
   2 ?   13.2   6.2   1.1e-05     0.048      66     170 ..     151     252 ..     143     256 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.2
     DUF1576 127 vlgilvGiiaGfllpalatnvlk 149
                 +  ++++++aG++++a+a++ ++
  KIR60948.1  74 LGPLILALVAGLVVAAVASAATA 96 
                 33356788888888888887665 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.1e-05
     DUF1576  66 lgFsafGknllNiipillGvlLyalvkkesfkkyilaalfgtaLaPivgellfslelelglvlgilvGiiaGfllpalatnvlklhgGlnLYNvGfaaG 164
                 ++F +fG  + Ni  ++lGv+L+++v      ++++   +g ++  ++ +  +   + ++    il+ ++ G l++ +a+ + ++  G+  +NvGf +G
  KIR60948.1 151 TAFTVFGAAVTNIQLLILGVTLVMMVG---LDQFVNRSRLGRGIRAVAQDADTAALMGVNKNRVILLVFVLGGLMAGVAALLWNVRYGYTKFNVGFLIG 246
                 68********************99886...677899999999999999999777777777778889999999999************************ PP

     DUF1576 165 lvalil 170
                 l a+  
  KIR60948.1 247 LKAFAA 252
                 *99764 PP

>> Sid-5  Sid-5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.11   4.7e+02      13      42 ..      19      48 ..      14      52 .. 0.84
   2 ?    4.7   0.1    0.0077        34      18      51 ..     163     196 ..     158     206 .. 0.88
   3 ?    1.8   0.1     0.063   2.8e+02       9      37 ..     203     231 ..     197     240 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.11
       Sid-5 13 eencvilLaisilllllNilqvvffnRakl 42
                e+  +++L+ ++  l++ +l ++ f  +++
  KIR60948.1 19 EQGAIYALVALGYTLVYGVLRLINFAHSEV 48
                56789***************9998877665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0077
       Sid-5  18 ilLaisilllllNilqvvffnRakllklyRrrfq 51 
                 i L+i+++ l++ ++   f+nR++l + +R+ +q
  KIR60948.1 163 IQLLILGVTLVMMVGLDQFVNRSRLGRGIRAVAQ 196
                 789999999*****************99999877 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.063
       Sid-5   9 LkaaeencvilLaisilllllNilqvvff 37 
                 L   ++n+vilL++++  l+  +  +++ 
  KIR60948.1 203 LMGVNKNRVILLVFVLGGLMAGVAALLWN 231
                 556789*******9876666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2291.95
//
Query:       KIR60949.1  [L=384]
Description: branched-chain amino acid ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-50  172.2  25.3    1.1e-50  172.2  25.3    1.3  2  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
        8.2    6.5   7.0       0.49   10.4   0.2    2.4  3  SP24          Putative virion membrane protein of plant and i


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1      0.84   7.5e+03     138     146 ..      28      36 ..      19      41 .. 0.49
   2 !  172.2  25.3   1.3e-54   1.1e-50       5     268 .]      69     351 ..      66     351 .. 0.94

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 0.84
  BPD_transp_2 138 alllvlavl 146
                   a+++++++l
    KIR60949.1  28 AIAALIVLL 36 
                   222222222 PP

  == domain 2  score: 172.2 bits;  conditional E-value: 1.3e-54
  BPD_transp_2   5 lltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl.....lllallvallvgaavglllgllvlrlkvdeliitllllsvlv 96 
                   +l  +a+++++A+Gl++v+g+aG+++lg  gf+alGay++all      l     +l+a++va++v+++ g++lg ++lrl+ d+l+i++l++ +++
    KIR60949.1  69 VLFDTAVFVLLAVGLNVVVGFAGLLDLGYFGFYALGAYTVALLTSPESRLgtnwpWLAAVPVAVMVAMVSGVILGGPTLRLRGDYLAIVTLGFAEMI 165
                   677889***********************************99987665588898999*************************************** PP

  BPD_transp_2  97 gltlllltgitsgvkgqssvkellgfagallsflsaviv.......llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvis 186
                   +l++  ++g  +g+ g++ ++ + g+ ++  +  + v +       l+++llv++++  l ++r+Gra+ a++e+e+aa+++G++++++kl++f+i+
    KIR60949.1 166 RLYAARNEGVLQGQRGIPAIPHPPGTGSDGKPLFGVVDArpyywllLTLILLVIVLVRNLANSRVGRAWVATREDEDAAEVMGVPTFKYKLWAFAIG 262
                   *****************99988888877777777666667999999999999999999*************************************** PP

  BPD_transp_2 187 galAglaGallalllgsipp.nigvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgi......ptelarvllgallilvl 268
                   +a+Agl Ga++a  +++i+  ++ ++ ++ ++aav+lGgag++ g+++G+ + +++ ++l+ +         + e++ +++g+++i+++
    KIR60949.1 263 AAVAGLTGAVFAGKQTFINSdQFVLESSILVLAAVILGGAGNIKGAIVGGAVTWYLPEWLRGVGDLvgvefdAAEYRILVFGVVIIVMM 351
                   **********************************************************8888887789898889*********999986 PP

>> SP24  Putative virion membrane protein of plant and insect virus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   5.4e-05      0.49      66      95 ..      20      49 ..      17      81 .. 0.90
   2 ?   -4.3   0.3       1.9   1.7e+04      10      16 ..     214     220 ..     209     227 .. 0.45
   3 ?   -0.9   0.1      0.18   1.6e+03      64      86 ..     333     355 ..     291     359 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.4e-05
        SP24 66 apkkervvlalaavlyvivlPertvleYli 95
                +pk+ r ++++a+++ +++lP+r  +eYl 
  KIR60949.1 20 MPKQVRWAAIAALIVLLYILPNRWFYEYLG 49
                79999***********************95 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 1.9
        SP24  10 fvlvlvl 16 
                 ++l++++
  KIR60949.1 214 LILLVIV 220
                 2222222 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.18
        SP24  64 ldapkkervvlalaavlyvivlP 86 
                 +da + + +v+ +++++++i+ P
  KIR60949.1 333 FDAAEYRILVFGVVIIVMMIFRP 355
                 45555555555666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2629.29
//
Query:       KIR60950.1  [L=306]
Description: branched-chain amino acid ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-33  116.6   0.0    1.5e-33  116.3   0.0    1.1  1  ABC_tran      ABC transporter
    7.6e-12   44.9   0.3    1.6e-11   43.9   0.3    1.6  1  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 
    2.2e-08   34.3   0.3     0.0045   16.8   0.1    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0012   19.4   0.2     0.0021   18.6   0.2    1.5  1  AAA_23        AAA domain
     0.0022   17.7   0.0      0.005   16.6   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.056   13.7   1.0        1.6    9.0   0.1    2.2  2  AAA_22        AAA domain
      0.082   12.6   0.3       0.29   10.8   0.3    1.9  1  AAA_30        AAA domain
      0.083   13.0   0.1        0.2   11.7   0.1    1.7  1  MMR_HSR1      50S ribosome-binding GTPase
      0.083   12.8   0.0       0.14   12.0   0.0    1.3  1  RsgA_GTPase   RsgA GTPase
      0.092   12.2   0.0       0.26   10.7   0.0    1.8  1  SMC_N         RecF/RecN/SMC N terminal domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.0   8.1e-37   1.5e-33       1     136 [.      69     229 ..      69     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 8.1e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................... 79 
                 l++v+++l++ge+++++G+nGaGK+t +++++g ++pteGei+++g+ ++  ++  ++++ i+  +q+ +lfpe+t+ en                   
  KIR60950.1  69 LDKVNFTLYKGEILGLIGPNGAGKTTCFNAMTGVYRPTEGEIRFKGQRTNGkRRSWITKAGIARTFQNIRLFPEMTALENvmvgadvhhktsvisamlr 167
                 789******************************************9999995566677889************************************** PP

                 .........HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                          e +e++ ++l+ +g++  +++ +    ++LS+G+++r+++aral+++p ll+lDEp 
  KIR60950.1 168 lprhfreerEGREKARELLRFVGIERRANDLA----RNLSYGEQRRLEIARALATDPALLCLDEPA 229
                 **999854444444556666666555555555....*****************************7 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.3   8.7e-15   1.6e-11       1      23 []     278     300 ..     278     300 .. 0.98

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 8.7e-15
  BCA_ABC_TP_C   1 rvIAeGtPaEvrndPrVieAYLG 23 
                   ++IAeG PaEvr dP+Vi+AYLG
    KIR60950.1 278 KKIAEGLPAEVRDDPKVIAAYLG 300
                   79********************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.2e-06    0.0092       2      50 ..      82     135 ..      81     149 .. 0.74
   2 !   16.8   0.1   2.5e-06    0.0045     219     298 ..     181     260 ..     158     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.2e-06
      AAA_21   2 nvliGpNgsGKSnLLdaldllarl.....drdvegltdelsggggirkipslld 50 
                  +liGpNg+GK++ + a+ ++ r      +  +++++ ++++  + ++i++ + 
  KIR60950.1  82 LGLIGPNGAGKTTCFNAMTGVYRPtegeiRFKGQRTNGKRRSWITKAGIARTFQ 135
                 58****************999887777776666666666666666666666555 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 2.5e-06
      AAA_21 219 r...gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 +    ++f+  +++ +  ar+lS G +r l ++ al+ ++   +ll++DEp +g  P+  ++ll+l++e +++g+ v+l  H+
  KIR60950.1 181 KareLLRFVGIERRANDLARNLSYGEQRRLEIARALATDP---ALLCLDEPAAGFTPAEKEELLGLIREIRDKGTTVLLIEHD 260
                 24457788888888899999*********99999999999...**************************99999999886555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.2   1.1e-06    0.0021      11      40 ..      70     100 ..      60     141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.1e-06
      AAA_23  11 rdqeidF.skgltlItGpNGaGKTTildAik 40 
                 +++++ + +  +  ++GpNGaGKTT ++A++
  KIR60950.1  70 DKVNFTLyKGEILGLIGPNGAGKTTCFNAMT 100
                 555666655568889**************98 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.8e-06     0.005      23      54 ..      79     112 ..      68     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.8e-06
      AAA_29  23 g.atlltGpsGsGKSTllDAiqalLvpak.kvrf 54 
                 g +  l+Gp+G+GK+T + A++ +  p++ ++rf
  KIR60950.1  79 GeILGLIGPNGAGKTTCFNAMTGVYRPTEgEIRF 112
                 447779****************999988766665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00089       1.6       6      25 ..      80      99 ..      76     127 .. 0.88
   2 ?    3.5   0.1     0.045        81      55     128 ..     180     257 ..     131     264 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00089
      AAA_22  6 gilvvtGesGtGKTtllrrl 25
                 il ++G+ G+GKTt+ + +
  KIR60950.1 80 EILGLIGPNGAGKTTCFNAM 99
                57779**********99876 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.045
      AAA_22  55 dllrellralglelka.erlsseell.ealeqalrarav.ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                 + +rellr++g e+ a   +++  +  ++  + +ra a+ ++ll +DE    ++   +ee+l  +r++ +   kg++++L+
  KIR60950.1 180 EKARELLRFVGIERRAnDLARNLSYGeQRRLEIARALATdPALLCLDEPAAgFTpaeKEELLGLIREIRD---KGTTVLLI 257
                 556778888888887742333333333333334444444889******9997865544777777788877...66666665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00016      0.29      20      48 ..      81     109 ..      72     261 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggr 48 
                 +  l Gp G+GKtt  +a++ +++  +g+
  KIR60950.1  81 ILGLIGPNGAGKTTCFNAMTGVYRPTEGE 109
                 67799***************999987433 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00011       0.2       3      33 ..      83     114 ..      81     141 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                 EEEESTTSSHHHHHHHHHTS.TEEESSSTTSS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.kaivsdkpgtT 33 
                 +++G   +GK+t +na+tg  +   +++ ++ 
  KIR60950.1  83 GLIGPNGAGKTTCFNAMTGVyRPTEGEIRFKG 114
                 79****************95444444444444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.9e-05      0.14      91     133 ..      70     113 ..      58     129 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.9e-05
                  HHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S----- CS
  RsgA_GTPase  91 eelkellkd.ktsvlvGqSGvGKStLinallpelelktgevsek 133
                  ++++  l + ++  l+G+ G+GK+t  na+++  +   ge++ k
   KIR60950.1  70 DKVNFTLYKgEILGLIGPNGAGKTTCFNAMTGVYRPTEGEIRFK 113
                  56666665559999*****************9988888888765 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00015      0.26      26      45 ..      81     100 ..      70     280 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
                 EEEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAil 45 
                 +  ++GpNG+GK+  ++A+ 
  KIR60950.1  81 ILGLIGPNGAGKTTCFNAMT 100
                 5679**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 2008.60
//
Query:       KIR60951.1  [L=236]
Description: amino acid ABC transporter ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-29  101.3   0.0    9.8e-29  100.6   0.0    1.3  1  ABC_tran       ABC transporter
    5.4e-14   52.7   0.2    8.5e-06   25.8   0.1    2.1  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    6.5e-05   22.7   0.0    0.00014   21.7   0.0    1.6  1  BCA_ABC_TP_C   Branched-chain amino acid ATP-binding cassette
    8.1e-05   22.4   3.4     0.0003   20.6   3.4    1.8  1  AAA_30         AAA domain
     0.0011   18.7   0.1      0.034   13.9   0.0    2.1  2  IstB_IS21      IstB-like ATP binding protein
     0.0017   18.9   0.3     0.0075   16.8   0.1    1.9  2  AAA_23         AAA domain
      0.002   17.6   0.3       0.39   10.1   0.2    2.1  2  SMC_N          RecF/RecN/SMC N terminal domain
     0.0028   18.0   0.2       0.33   11.2   0.0    2.2  2  AAA_22         AAA domain
     0.0029   17.2   0.2      0.013   15.1   0.0    2.0  2  AAA_27         AAA domain
      0.008   15.9   0.0      0.016   14.9   0.0    1.5  1  AAA_29         P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.011   15.9   0.0      0.018   15.3   0.0    1.5  1  AAA_28         AAA domain
      0.016   15.0   0.1      0.027   14.3   0.1    1.3  1  MukB           MukB N-terminal
      0.016   14.8   0.9      0.021   14.4   0.2    1.5  2  SRP54          SRP54-type protein, GTPase domain
      0.017   15.3   0.2       0.72   10.1   0.2    2.3  1  SbcCD_C        Putative exonuclease SbcCD, C subunit
      0.018   14.8   0.4      0.045   13.5   0.0    1.7  2  AAA_15         AAA ATPase domain
      0.031   13.9   0.5       0.09   12.3   0.3    1.9  1  AAA_25         AAA domain
      0.031   13.2   0.2      0.054   12.4   0.2    1.3  1  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
      0.068   13.3   0.2      0.096   12.8   0.2    1.6  1  MMR_HSR1       50S ribosome-binding GTPase
      0.079   13.3   0.8        0.2   12.0   0.5    1.9  1  AAA_16         AAA ATPase domain
      0.081   10.4   0.4       0.12    9.9   0.4    1.1  1  DUF3584        Protein of unknown function (DUF3584)
       0.13   12.3   0.1       0.24   11.4   0.1    1.4  1  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
       0.14   12.5   2.1       0.84   10.0   2.1    2.1  1  AAA_19         AAA domain
       0.14   12.3   0.4       0.45   10.7   0.4    2.0  1  AAA_33         AAA domain
       0.28    9.8   0.1       0.57    8.8   0.0    1.5  2  AAA_13         AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0   1.3e-31   9.8e-29       1     136 [.      18     163 ..      18     164 .. 0.87

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 1.3e-31
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH........HHHTC.HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxx.xxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren........esdee.iekal 89 
                 l+ +sl ++ege+va++G nGaGK+t +++++gl   ++G+i +dg+d+++ +   ++ + ig  p+   +fp++tv en         +++e +++++
  KIR60951.1  18 LHGISLVVNEGEVVALIGANGAGKTTTMRAISGLRPVAQGSIVFDGTDVTRmRADLRVTRGIGQAPEGRGVFPGMTVLENlemgaytrRDKAEiAKDMA 116
                 6889**********************************************97677778899***********************987734444344444 PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                   l+l    +++ k+ + +LSgG++q++a+ ral+ +p+llllDEp+
  KIR60951.1 117 MVLDLFPRLAERRKQAGGTLSGGEQQMLAVGRALMARPRLLLLDEPS 163
                 55555556666667889*****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.7e-08   1.3e-05       2      41 ..      31      72 ..      30      85 .. 0.79
   2 !   25.8   0.1   1.1e-08   8.5e-06     237     293 ..     136     189 ..     109     196 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.7e-08
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl..drdvegltdelsgggg 41
                 +liG+Ng+GK++ ++a+++l+ +   + v+++td+ +++ +
  KIR60951.1 31 VALIGANGAGKTTTMRAISGLRPVaqGSIVFDGTDVTRMRAD 72
                68*******************998876666666666665555 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 1.1e-08
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQvi 293
                 lS G +++la+  al +++   +lll+DEp  gL Pkl+  ++e++ +++++ g+ ++
  KIR60951.1 136 LSGGEQQMLAVGRALMARP---RLLLLDEPSMGLAPKLIQQIFEIItRINEQ-GTTIL 189
                 799*****77777777666...************************544444.66665 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.9e-07   0.00014       5      23 .]     216     234 ..     216     234 .. 0.98

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.9e-07
  BCA_ABC_TP_C   5 eGtPaEvrndPrVieAYLG 23 
                   eGt +E   dP+V eAYLG
    KIR60951.1 216 EGTGQELLHDPAVKEAYLG 234
                   8*****************9 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   3.4     4e-07    0.0003      13     128 ..      24     197 ..      15     210 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4e-07
      AAA_30  13 lltsgdrvavltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvLa.........eelgi.eastiakllkrlk................... 81 
                 +++ +  v++l G+ G+GKtt+++a+  +   a g  v+  +   ++ ++L+         e+ g+ +++t+ + l+  +                   
  KIR60951.1  24 VVN-EGEVVALIGANGAGKTTTMRAISGLRPVAqGSIVFDGTDVTRMRADLRvtrgigqapEGRGVfPGMTVLENLEMGAytrrdkaeiakdmamvldl 121
                 344.4569******************9999988563333333344444444422233333322221355555555533335555555555666777777 PP

      AAA_30  82 .........................grarlepgtllivDEagmv....dtkqlaallkaaekagakvilvGDerQl 128
                                          gra +++ +ll+ DE +m      ++q+ +++++++++g++++lv  ++Q 
  KIR60951.1 122 fprlaerrkqaggtlsggeqqmlavGRALMARPRLLLLDEPSMGlapkLIQQIFEIITRINEQGTTILLVEQNAQQ 197
                 777778888***************977778888**********865656677777888888899999999888875 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.6e-05     0.034      35     101 ..      15      84 ..       9     132 .. 0.80
   2 ?    3.0   0.0     0.097        73     105     146 ..     150     190 ..     134     202 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.6e-05
   IstB_IS21  35 vkeLatlsfi.ekkenivllGpsGvGKshlaial.gveavraglsvlf.vrvedLveelkrarrdgklar 101
                 +++L + s + ++ e ++l+G  G+GK+    a+ g + v++g  v+  + v+++ + l++ r+ g++ +
  KIR60951.1  15 IQALHGISLVvNEGEVVALIGANGAGKTTTMRAIsGLRPVAQGSIVFDgTDVTRMRADLRVTRGIGQAPE 84 
                 778888886526779999**********9999995678888886665347899********999998765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.097
   IstB_IS21 105 rllkvdllilDdlgllpldqaeaellfeviekryerrsiiit 146
                  +++++ll+lD+ ++  l  +  +++fe+i +  e+ ++i+ 
  KIR60951.1 150 LMARPRLLLLDEPSM-GLAPKLIQQIFEIITRINEQGTTILL 190
                 467899*****9664.4667788999*****99999998875 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1     1e-05    0.0075      20      40 ..      29      49 ..      12      51 .. 0.85
   2 ?    0.1   0.0       1.3     1e+03     150     178 ..     169     197 ..     106     209 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1e-05
      AAA_23 20 gltlItGpNGaGKTTildAik 40
                 +++++G NGaGKTT ++Ai 
  KIR60951.1 29 EVVALIGANGAGKTTTMRAIS 49
                57899**************95 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.3
      AAA_23 150 dkkerleelekeleeledekkllekleqe 178
                 +  +++ e+++ ++e+ +++ l+e++ q+
  KIR60951.1 169 KLIQQIFEIITRINEQGTTILLVEQNAQQ 197
                 45568888888888888888888887554 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.2   0.00052      0.39      25      45 ..      29      49 ..      20      52 .. 0.88
   2 ?    5.9   0.0      0.01       7.8     136     192 ..     135     187 ..      59     212 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00052
                SEEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAil 45
                ++ a++G+NG+GK+  + Ai+
  KIR60951.1 29 EVVALIGANGAGKTTTMRAIS 49
                5789**************995 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.01
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf 192
                 +LSgGe++++a+       +++p+ l llDe  + L  k ++++ e++ + +++   
  KIR60951.1 135 TLSGGEQQMLAVGRA---LMARPR-LLLLDEPSMGLAPKLIQQIFEIITRINEQGTT 187
                 7*******9988644...345554.78999999999999999999999877765333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00044      0.33       6      25 ..      29      48 ..      25      74 .. 0.86
   2 ?    5.0   0.0     0.038        28      37     128 ..     141     191 ..      95     210 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00044
      AAA_22  6 gilvvtGesGtGKTtllrrl 25
                 +++++G  G+GKTt++r +
  KIR60951.1 29 EVVALIGANGAGKTTTMRAI 48
                5789*************987 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.038
      AAA_22  37 e..........erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrseealeeLrsllnlsrkgvql 125
                 +          +rp++++ + ps +   +l +++++++++ ++                                                    g+++
  KIR60951.1 141 QqmlavgralmARPRLLLLDEPSMGLAPKLIQQIFEIITRINEQ---------------------------------------------------GTTI 188
                 03333334444555555555555555555555555555554444...................................................4444 PP

      AAA_22 126 iLv 128
                 +Lv
  KIR60951.1 189 LLV 191
                 443 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.7e-05     0.013      11      49 ..      12      51 ..       3      54 .. 0.76
   2 ?   -0.5   0.1         1   7.6e+02     128     153 ..     179     204 ..     124     213 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.7e-05
      AAA_27 11 yGkftd.rsldfsaeeadlhliyGpNEAGKstalrAisdl 49
                yG+++  + +++  +e ++  ++G+N AGK+t++rAis l
  KIR60951.1 12 YGRIQAlHGISLVVNEGEVVALIGANGAGKTTTMRAISGL 51
                67666523567777788888899**************987 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1
      AAA_27 128 erLreGGealleaegelgqlLfeasa 153
                 +r++e G+++l  e +  q+L  a+ 
  KIR60951.1 179 TRINEQGTTILLVEQNAQQALSRAHR 204
                 34555566666666666666666555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.2e-05     0.016      17      43 ..      23      49 ..       8      56 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.2e-05
      AAA_29 17 ieidlkgatlltGpsGsGKSTllDAiq 43
                + +++ +++ l+G++G+GK+T + Ai+
  KIR60951.1 23 LVVNEGEVVALIGANGAGKTTTMRAIS 49
                445544499************998886 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   2.4e-05     0.018       2      23 ..      31      57 ..      30     119 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.4e-05
      AAA_28  2 ivitGgestGKTtlleaLa.....arg 23
                ++++G+ ++GKTt+++a++     a+g
  KIR60951.1 31 VALIGANGAGKTTTMRAISglrpvAQG 57
                89***************9855444445 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   3.7e-05     0.027      27      46 ..      29      48 ..      23      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.7e-05
                HHHHHHS--SHHHHHHHHHH CS
        MukB 27 lvttlsGgnGaGksttmaaf 46
                 v +l G+nGaGk+ttm a+
  KIR60951.1 29 EVVALIGANGAGKTTTMRAI 48
                5899*************986 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   2.9e-05     0.021       3      44 ..      30      71 ..      28      74 .. 0.88
   2 ?   -3.3   0.0       7.8   5.8e+03     102     127 ..     171     197 ..     168     204 .. 0.48

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.9e-05
                EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTH CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaA 44
                v++l+G +GaGKTtt+  ++ l    + ++++  +D+ R+ A
  KIR60951.1 30 VVALIGANGAGKTTTMRAISGLRPVAQGSIVFDGTDVTRMRA 71
                899*************99999888888899999999888765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.8
                 HHHHHHHHHHH.SSSEEEEEEETTBHT CS
       SRP54 102 meelkkikkvv.kpdevllvldattgq 127
                 ++++ +i + + ++  ++l ++ +++q
  KIR60951.1 171 IQQIFEIITRInEQGTTILLVEQNAQQ 197
                 555555544442344445555554444 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00097      0.72      26      88 ..     129     178 ..     116     180 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00097
     SbcCD_C  26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88 
                  ++  gtlSGGe+q+la    +     ++        ++rl++LDE   +l ++ i++++e++
  KIR60951.1 129 RKQAGGTLSGGEQQMLAV---G----RALMA------RPRLLLLDEPSMGLAPKLIQQIFEII 178
                 56788999*****66532...2....22233......46777777777777777777777665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     6e-05     0.045      25      44 ..      30      49 ..      16      65 .. 0.87
   2 ?   -1.4   0.1       1.9   1.4e+03     324     355 ..     154     185 ..     149     198 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6e-05
      AAA_15 25 ltvliGkNnsGKSsileald 44
                +  liG+N++GK++ ++a+ 
  KIR60951.1 30 VVALIGANGAGKTTTMRAIS 49
                899***************95 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.9
      AAA_15 324 nvilliEEPEahLHpqaqkvlikllkelandn 355
                 + +ll++EP   L p++ +++++ + ++ +++
  KIR60951.1 154 PRLLLLDEPSMGLAPKLIQQIFEIITRINEQG 185
                 56889999999999999999998888877766 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   0.00012      0.09      29      50 ..      24      45 ..      17     121 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
      AAA_25 29 llpagelallaGapgtGKttla 50
                ++ +ge+++l+Ga g+GKtt  
  KIR60951.1 24 VVNEGEVVALIGANGAGKTTTM 45
                6889***************963 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   7.2e-05     0.054      13      51 ..      26      63 ..      16      68 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.2e-05
  TrwB_AAD_bind 13 retqhilivGttGsGKtqalekllrairargdraivlDl 51
                   +e + ++++G+ G+GKt+++++ + ++r  ++  iv+D 
     KIR60951.1 26 NEGEVVALIGANGAGKTTTMRA-ISGLRPVAQGSIVFDG 63
                   3667789*************98.6999999999999995 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   0.00013     0.096       2      41 ..      31      75 ..      30     191 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                EEEEESTTSSHHHHHHHHHT.....STEEESSSTTSSSSEEEEEE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg.....ekaivsdkpgtTrdinegrv 41
                va++G   +GK+t ++a++g     + +iv d   +Tr     rv
  KIR60951.1 31 VALIGANGAGKTTTMRAISGlrpvaQGSIVFDGTDVTRMRADLRV 75
                89*****************95544335677776677766655555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   0.00027       0.2      19      45 ..      25      49 ..      10     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00027
      AAA_16 19 vrsgrpelvllsGesGvGKsslvrell 45
                v++  +e+v l+G+ G GK++ +r++ 
  KIR60951.1 25 VNE--GEVVALIGANGAGKTTTMRAIS 49
                444..489***************9987 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.4   0.00015      0.12      19      37 ..      30      48 ..      20      50 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00015
     DUF3584 19 htnieGtNaaGKTtLlrLi 37
                 + + G+N+aGKTt++r i
  KIR60951.1 30 VVALIGANGAGKTTTMRAI 48
                47789************76 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00032      0.24      18      39 ..      25      48 ..      11      56 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00032
                H..TEEEEEEESTTSSHHHHHHHH CS
        TsaE 18 l..gdvilLeGdLGaGKTtlvrgl 39
                +  g+v++L G  GaGKTt +r++
  KIR60951.1 25 VneGEVVALIGANGAGKTTTMRAI 48
                134889***************998 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.1    0.0011      0.84       9      38 ..      27      56 ..      21     201 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0011
      AAA_19  9 kekvllvtaGpGtGKTrvlkhivallvelg 38
                + +v+++++  G GKT+++++i  l   ++
  KIR60951.1 27 EGEVVALIGANGAGKTTTMRAISGLRPVAQ 56
                56899**************99876655544 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4    0.0006      0.45       1      19 [.      30      48 ..      30     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0006
      AAA_33  1 lvllvGlpGsGKstlaerl 19
                +v l+G++G+GK+t  + +
  KIR60951.1 30 VVALIGANGAGKTTTMRAI 48
                799***********99876 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00076      0.57      23      40 ..      35      52 ..      29      81 .. 0.81
   2 ?   -3.4   0.0       3.5   2.6e+03     492     509 ..     128     145 ..     125     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00076
      AAA_13 23 GwNGaGKTtLSrllrsle 40
                G+NGaGKTt  r+++ l 
  KIR60951.1 35 GANGAGKTTTMRAISGLR 52
                9*************9983 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.5
      AAA_13 492 ggsqaaetLSeGEktaIa 509
                 + +qa +tLS GE+ + a
  KIR60951.1 128 RRKQAGGTLSGGEQQMLA 145
                 567899*******98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 1580.41
//
Query:       KIR60952.1  [L=100]
Description: hypothetical protein TK50_24400 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 682.19
//
Query:       KIR60953.1  [L=902]
Description: DNA polymerase I [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-143  478.7   0.0   1.6e-143  478.3   0.0    1.2  1  DNA_pol_A        DNA polymerase family A
    2.4e-56  190.0   0.1    4.1e-56  189.3   0.1    1.4  1  5_3_exonuc_N     5'-3' exonuclease, N-terminal resolvase-like
    2.2e-22   79.5   0.0    5.2e-22   78.3   0.0    1.7  1  5_3_exonuc       5'-3' exonuclease, C-terminal SAM fold
     0.0024   17.6   0.0     0.0056   16.4   0.0    1.6  1  DNA_pol_A_exo1   3'-5' exonuclease
      0.009   16.6   0.3      0.064   13.9   0.0    2.5  3  HHH_5            Helix-hairpin-helix domain
  ------ inclusion threshold ------
      0.011   15.6   0.1      0.052   13.4   0.0    2.2  2  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
       0.12   12.2   0.5       0.41   10.6   0.2    2.1  2  HHH              Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> DNA_pol_A  DNA polymerase family A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  478.3   0.0  6.2e-147  1.6e-143       3     375 ..     524     898 ..     522     899 .. 0.98

  Alignments for each domain:
  == domain 1  score: 478.3 bits;  conditional E-value: 6.2e-147
                 HHHHHHHHHHHHHHHHHHHHHHHSS.C-STTTCCCCHHHHTCCCCS.TTSBETTSBTTTCCHHHHHT.S...CHHHHHHHHHHHHHHHHHTTTTGGGCC CS
   DNA_pol_A   3 eleelseeleeeleeleeeiyelag.efnlnSpkqlaevLfeklklpekkktktgystdeevLekla.k..hplaklileyrelsklkstyvdallkli 97 
                 +l+el+++++ e++++ + +y+++g efnl+Spkql+e+Lf +l+lp++kk ktgy+td+++L+ l  +   p+++++l++r+++klk+t vd+llk +
  KIR60953.1 524 YLHELEAHFAGEVKSAAQGAYAAVGrEFNLGSPKQLQELLFGELGLPKTKKIKTGYTTDADALQWLYaQnpLPVLEHLLRHRDVAKLKTT-VDGLLKSV 621
                 78999********************88***************************************964467899************998.9******* PP

                 BTTTSEE--EEESSSSSSSS-EEESS-GGGS-TTSCCHHHHHHTBCG.TTCCEEEEEEETTHHHHHHHHHCT.HHHHHHHHTTH-HHHHHHHHHCTS.G CS
   DNA_pol_A  98 nkktgrihtsfnqtvtatGrlsssepnlqnipirteegrriRkafvaeegghvllsaDysqiELRilAhlsgdeklieafkegeDiHsktAsevfgvpv 196
                 + ++griht+f+qtv+atGrlss++pnlqnipirteegrriR+afv+ eg  +ll+aDysqiE+Ri+Ahls+d+klieaf++g+D H++tAs vfgvpv
  KIR60953.1 622 S-EDGRIHTTFKQTVAATGRLSSTDPNLQNIPIRTEEGRRIRRAFVVGEGFECLLTADYSQIEMRIMAHLSSDAKLIEAFNSGHDFHAATASSVFGVPV 719
                 5.79*********************************************9777********************************************** PP

                 GGHHHHHHHHHHHHHHHHHTT--HHHHHHHHTSSHHHHHHHHHHHHHHSHHHHHHHHHHHHHCCCECCEEETTCSEEEECTTT-CCHCCCHHHHHHHHH CS
   DNA_pol_A 197 eevtkeqRrqaKainfGiiYGagakgLaeqlgiseeeAkefiekyferypgvksyleetleeakekgyvetllgrrrylpeiksknaalrekaeraavN 295
                  evt++qRr+ Ka+n+G+ YG++a+gL++qlgi+ eeA+ ++++yf+ + gv++yl+e++++a+++gy++t+lgrrrylp++ s+n+++r  aer+a+N
  KIR60953.1 720 GEVTADQRRKIKAMNYGLAYGLSAFGLSQQLGITAEEARGLMDNYFAGFGGVRDYLQEVVARARHDGYTSTILGRRRYLPDLVSDNRQRRDMAERMALN 818
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEETTEEEEEEECCCHHHHHHHHHHHHHHHHHSSS--EEEEEEESSCC CS
   DNA_pol_A 296 apiQGsAaDiiklamikieealkeeklkarlllqvHDElvfevpeeeveevaelvkeamesaveldvplkvevkvGknWg 375
                 apiQGsAaDiik+am+++++ l+e++l++r+llqvHDElvfev++ e++++++lv+ +m  a+ l+vpl+v+v+ G++W+
  KIR60953.1 819 APIQGSAADIIKVAMLRVDAGLREAGLRSRMLLQVHDELVFEVAPGERDALEALVRGQMGGAYPLSVPLEVSVGEGRDWN 898
                 *******************************************************************************7 PP

>> 5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.3   0.1   1.6e-59   4.1e-56       1     159 []       7     175 ..       7     175 .. 0.95

  Alignments for each domain:
  == domain 1  score: 189.3 bits;  conditional E-value: 1.6e-59
  5_3_exonuc_N   1 kllLiDgsslifRayyal....lttsdgeptnavygflnmllklleeekpthlavvfDakkktfRhelypeYKanReetpeelkeqlplikevleal 93 
                   +llL+Dg+s+++Ra++al    ++t++g+ptnavygf++ml+++l++e+pth++v+fD ++++fR+e y+eYKa R+etp ++k q+ l+kevl+al
    KIR60953.1   7 RLLLVDGHSMAYRAFFALpvenFSTTTGQPTNAVYGFTSMLINVLRDEQPTHIVVAFDVSRQSFRTEKYAEYKAGRSETPADFKGQVSLVKEVLAAL 103
                   589**************9999999**********************************8899*********************************** PP

  5_3_exonuc_N  94 gikvlevegyEADDvigtlakraeeeg..vvivsgDkDllQlvednvrvld....vkkeelldeeevaekyg 159
                   +i+v+e+egyEADDvi+tla++a+++g  v i sgD+D++Qlv+d+++vl+    v++ +++d++++++kyg
    KIR60953.1 104 RIPVVEKEGYEADDVIATLACQARDQGmsVLISSGDRDAFQLVDDHITVLYprkgVSDLARMDAAAIEAKYG 175
                   **********************9976667**********************97766665579*******997 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.0     2e-25   5.2e-22       1      96 [.     176     270 ..     176     271 .. 0.96

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 2e-25
  5_3_exonuc   1 vkPeqiidlkaLvGDssDnipGvpgiGektAakLlkeygsleeilenldelkekklkekLeenkeearlskkLatiktdvpleleledlklkepde 96 
                 v P+++ dl+aLvG++sDn+pGvpg+G+ktAak+++ yg l+++++++de+k+ k+ ++L+e   ++  ++++  ++ d++l+++ ed+++  +d+
  KIR60953.1 176 VGPQRYRDLAALVGETSDNLPGVPGVGPKTAAKWINLYGGLDGVVARADEIKG-KAGDSLRERLADVIRNYEINCLVSDLELPVRPEDARWAGWDR 270
                 67**************************************************6.**********************************99988876 PP

>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.2e-06    0.0056      42     133 ..     355     446 ..     342     453 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.2e-06
                     EEEEEECSSEEEEEECTTTTTT-HGHHHHHHHT-TTSEEEESSHHHHHHHHHHHHTS--SSEEEH.HHHHHHTTHSTT.SSHHHHHHHHHS.B-- CS
  DNA_pol_A_exo1  42 iliqlgekeeayiidplelgddvalealkrlledenitkvghnakfDlevlardfgielenlfdt.mlaayvldyers.hsLdsLaekylg.dle 133
                        +l ++ +a++  ++  ++d   +al++ l+d+  +kv+h+ k  + ++a   g  l +++ + +laay+  +++  ++L++La +yl  +l 
      KIR60953.1 355 LALALATGPAAWLDPTALAEAD--ERALAAWLADPARPKVLHDSKHARLAFAA-RGWSLAGVARDtELAAYLARPDQRsYDLTDLALRYLHrELR 446
                     5667777888888555555555..89*************************99.777777777555*********9998***********95554 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.4   3.6e+03      26      46 ..     159     179 ..     156     184 .. 0.84
   2 !   13.9   0.0   2.5e-05     0.064      24      52 ..     182     210 ..     167     211 .. 0.84
   3 ?   -2.5   0.2       3.3   8.6e+03      15      38 ..     356     381 ..     354     382 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.4
                 HHHHHHS-HHHHHTSTTS-HH CS
       HHH_5  26 vedlaaadveeLakipGiGkk 46 
                 v dla++d++++ +  G+G+ 
  KIR60953.1 159 VSDLARMDAAAIEAKYGVGPQ 179
                 679999999999998898886 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.5e-05
                 -SHHHHHHS-HHHHHTSTTS-HHHHHHHH CS
       HHH_5  24 esvedlaaadveeLakipGiGkktAerii 52 
                 + +++l+ ++ + L  +pG+G+ktA ++i
  KIR60953.1 182 RDLAALVGETSDNLPGVPGVGPKTAAKWI 210
                 4567777779999***************9 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.3
                 HHHHHTT..T--SHHHHHHS-HHHHH CS
       HHH_5  15 Alallsa..GiesvedlaaadveeLa 38 
                 Alal+ +   +  + +la+ad+ +La
  KIR60953.1 356 ALALATGpaAWLDPTALAEADERALA 381
                 56666553225578899999998887 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.4   6.1e+03       7      13 ..     174     180 ..     174     186 .. 0.74
   2 ?   13.4   0.0     2e-05     0.052       5      19 ..     197     211 ..     194     217 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
  DNA_pol_lambd_f   7 yGVGpkt 13 
                      yGVGp++
       KIR60953.1 174 YGVGPQR 180
                      89**987 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2e-05
  DNA_pol_lambd_f   5 kvyGVGpktAkkwya 19 
                      +v GVGpktA kw++
       KIR60953.1 197 GVPGVGPKTAAKWIN 211
                      799**********98 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00016      0.41      16      25 ..     198     207 ..     193     208 .. 0.87
   2 ?   -2.6   0.0       2.4   6.1e+03      19      25 ..     719     725 ..     719     726 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
                 STT-SHHHHH CS
         HHH  16 lPGVGpktAe 25 
                 +PGVGpktA 
  KIR60953.1 198 VPGVGPKTAA 207
                 9********6 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.4
                 -SHHHHH CS
         HHH  19 VGpktAe 25 
                 VG+ tA+
  KIR60953.1 719 VGEVTAD 725
                 9*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (902 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 6269.59
//
Query:       KIR60954.1  [L=116]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-38  131.1   0.2    1.7e-38  130.9   0.2    1.1  1  DUF3140   Protein of unknown function (DUF3140)


Domain annotation for each model (and alignments):
>> DUF3140  Protein of unknown function (DUF3140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.2   9.8e-43   1.7e-38       1      92 []      15     108 ..      15     108 .. 0.99

  Alignments for each domain:
  == domain 1  score: 130.9 bits;  conditional E-value: 9.8e-43
     DUF3140   1 eFnelVNmtakeLeeWLkteeSkevgekkdg...gesvghesGrkiveilrkkkadltdddlehmrkVvgyvkrhlaqeepegkvedtkwrysLm 92 
                 eF+e+VNm + eL+ WL+++eSk+vg++k+g   gesvgh sGr+ive+lr+k+a+lt+ d++hmrkVvgyv+rhlaq +p+g+v+dtkwr sLm
  KIR60954.1  15 EFTEAVNMRPGELSAWLESDESKHVGWRKKGtagGESVGHSSGRRIVELLRRKRAELTEADYRHMRKVVGYVHRHLAQ-RPAGDVRDTKWRWSLM 108
                 8***************************999999********************************************.9**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 750.83
//
Query:       KIR60955.1  [L=73]
Description: hypothetical protein TK50_24415 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-20   73.7   0.3    1.1e-20   73.5   0.3    1.0  1  Hva1_TUDOR  Hypervirulence associated proteins TUDOR domain


Domain annotation for each model (and alignments):
>> Hva1_TUDOR  Hypervirulence associated proteins TUDOR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.3   6.4e-25   1.1e-20       1      58 [.      10      67 ..      10      68 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 6.4e-25
  Hva1_TUDOR  1 GdrVswkwggGestGkVeevltedteakgvtvnaskddPryeiendntGkevahkese 58
                Gd+Vsw +++G++ G V+e+lte t ++g+ vnas+++P+y i+nd +G++vah+++ 
  KIR60955.1 10 GDHVSWASHSGRAYGVVREKLTERTHVRGRAVNASPEQPQYRIRNDDSGRDVAHRPEV 67
                9*******************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 591.67
//
Query:       KIR60956.1  [L=497]
Description: 30S ribosomal protein S1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-77  254.7  29.8    5.8e-26   90.6   2.8    4.1  4  S1             S1 RNA binding domain
    1.3e-05   24.9   2.5       0.29   10.7   0.1    3.3  3  DUF2110        Uncharacterized protein conserved in archaea (
    9.7e-05   22.4   4.0          1    9.5   0.0    4.5  3  S1_2           S1 domain
  ------ inclusion threshold ------
       0.01   15.7   8.5       0.41   10.6   0.4    3.8  4  RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
      0.035   13.4   1.3      0.068   12.4   1.3    1.4  1  Opi1           Transcription factor Opi1
      0.063   13.2   0.2        2.6    8.0   0.0    2.7  2  RsgI_N         Anti-sigma factor N-terminus
      0.081   12.9   0.4        1.1    9.3   0.1    2.6  2  DUF2187        Uncharacterized protein conserved in bacteria 


Domain annotation for each model (and alignments):
>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   2.5   2.6e-18   6.8e-15       2      75 .]      36     108 ..      35     108 .. 0.97
   2 !   46.2   0.6   1.7e-15   4.4e-12       5      75 .]     126     191 ..     123     191 .. 0.96
   3 !   90.6   2.8   2.3e-29   5.8e-26       1      75 []     208     280 ..     208     280 .. 0.98
   4 !   79.5   2.3   6.8e-26   1.7e-22       2      75 .]     294     366 ..     293     366 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 2.6e-18
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 ++ g++veG+V++v+++ +  ++g++ eg +p  els + ++ dp ev++vGd +++ vl+ +++++r+ils+k
  KIR60956.1  36 FNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIK-HDVDPAEVVSVGDHIEALVLQKEDKEGRLILSKK 108
                 689************************************.********************************86 PP

  == domain 2  score: 46.2 bits;  conditional E-value: 1.7e-15
                 TCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   5 gevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 + vv G V++v+kgG++ ++g   +gf+pas+++++   +++d + +vG e+++k++++dk+r++++ls++
  KIR60956.1 126 DGVVRGSVIEVVKGGLILDIG--LRGFLPASLVEMR---RVRDLQPYVGRELEAKIIELDKNRNNVVLSRR 191
                 569******************..***********88...9*****************************86 PP

  == domain 3  score: 90.6 bits;  conditional E-value: 2.3e-29
                 HSTTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   1 kpekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 k++kg+v +G+V+s++++GafV+lg gv+g+v++sels++ ++++p+ev+ vG+ev+v+vl+vd dr+r++ls+k
  KIR60956.1 208 KLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWK-HIDHPSEVVEVGQEVEVEVLDVDLDRERVSLSLK 280
                 679**********************.**************.********************************86 PP

  == domain 4  score: 79.5 bits;  conditional E-value: 6.8e-26
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 +++ ++v G+Vt+++++GafV+++ g+eg+v++sel+ + +ve p++v++vG ev vkv+++d +rrri+ls+k
  KIR60956.1 294 HAIQQIVPGKVTKLVPFGAFVRVDDGIEGLVHISELAER-HVEIPEQVVQVGSEVMVKVIDIDLERRRISLSLK 366
                 67789**********************************.********************************86 PP

>> DUF2110  Uncharacterized protein conserved in archaea (DUF2110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00011      0.29      60     103 ..      28      73 ..      14     102 .. 0.77
   2 !    7.8   0.0   0.00089       2.3      58      98 ..     113     153 ..     106     165 .. 0.88
   3 !    4.7   0.1    0.0077        20      67     157 ..     204     294 ..     185     308 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
     DUF2110  60 efgeitkeveegevyvGtlesldedgfvldigve..vripkdelkp 103
                   +e  k +++g+++ Gt+ ++d+d+ +ldig +    ip+ el+ 
  KIR60956.1  28 AIDETIKYFNDGDIVEGTVVKVDRDEVLLDIGYKteGVIPSRELSI 73 
                 55777788************************98334577777774 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00089
     DUF2110  58 reefgeitkeveegevyvGtlesldedgfvldigvevripk 98 
                 ++ +g+i+k  +e+ v++G + ++ + g +ldig +   p+
  KIR60956.1 113 ERAWGTIEKIKDEDGVVRGSVIEVVKGGLILDIGLRGFLPA 153
                 578*******************************9866555 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0077
     DUF2110  67 e....veegevyvGtlesldedgfvldigve.vripkdelkpLgegspeqiaerFGlvqhlpleveveeveeeekeiearltdeqvdrlyewkkgk 157
                 e    +++g+v +G+++s+ + g  +d g     ++ +el+   +++++   e   + q   +evev +v+ +++ +  +l  +q d ++++++++
  KIR60956.1 204 EflnkLQKGQVRKGVVSSIVNFGAFVDLGGVdGLVHVSELS---WKHIDHPSEVVEVGQ--EVEVEVLDVDLDRERVSLSLKATQEDPWRQFARTH 294
                 4444499********************98652555556665...333333333333334..45556666777888888999999999999998874 PP

>> S1_2  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.077     2e+02       2      36 ..      39      73 ..      39     108 .. 0.66
   2 !    8.4   0.2   0.00087       2.2       2      36 ..     212     246 ..     211     265 .. 0.73
   3 !    9.5   0.0   0.00039         1       4      41 ..     299     337 ..     298     349 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.077
        S1_2  2 GkintlkvlretdfgyfLqkdesgevlLpkkevpe 36
                G i++ +v++ +   + L+ + ++e   p +e+  
  KIR60956.1 39 GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 73
                66777777777777777777777777777777653 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00087
        S1_2   2 GkintlkvlretdfgyfLqkdesgevlLpkkevp.e 36 
                 G++++  v  + +fg+f++ ++ ++ l++ +e+  +
  KIR60956.1 212 GQVRKGVVSSIVNFGAFVDLGG-VDGLVHVSELSwK 246
                 99*****************999.9999988887542 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00039
        S1_2   4 intlkvlretdfgyfLqkdesgevlLpkkevp.eeleiG 41 
                 i+  kv++  +fg+f+  d++ e l++ +e+  +++ei 
  KIR60956.1 299 IVPGKVTKLVPFGAFVRVDDGIEGLVHISELAeRHVEIP 337
                 56679*************************974666665 PP

>> RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.4       3.7   9.4e+03       4      12 ..      43      51 ..      41      54 .. 0.74
   2 ?   -0.6   0.0      0.52   1.3e+03       3      19 ..      89     105 ..      87     107 .. 0.86
   3 ?   10.6   0.4   0.00016      0.41      34      57 ..     255     278 ..     250     280 .. 0.90
   4 ?    7.8   0.2    0.0012       3.1      34      57 ..     341     364 ..     311     366 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.7
  RNase_II_C_S1  4 dAvVvdvdd 12
                   +++Vv vd+
     KIR60956.1 43 EGTVVKVDR 51
                   788998886 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.52
  RNase_II_C_S1   3 FdAvVvdvddrggtVql 19 
                     +A V++ +d++g++ l
     KIR60956.1  89 IEALVLQKEDKEGRLIL 105
                    69**********99887 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00016
  RNase_II_C_S1  34 lplGervrVrLveADvatrrvrFe 57 
                    +++G++v+V++ ++D+++ rv ++
     KIR60956.1 255 VEVGQEVEVEVLDVDLDRERVSLS 278
                    589******************876 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0012
  RNase_II_C_S1  34 lplGervrVrLveADvatrrvrFe 57 
                    + +G++v V++ + D+++rr+ ++
     KIR60956.1 341 VQVGSEVMVKVIDIDLERRRISLS 364
                    689*****************9876 PP

>> Opi1  Transcription factor Opi1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.3   2.6e-05     0.068     109     185 ..     414     488 ..     406     495 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.6e-05
        Opi1 109 daesstssvdvdedrgrlrlrtktldgsiasnresavledeepallkstsssstsaaasrstsepvderdataatpa 185
                 d++++t   ++ e r r   +tk ++ s a++ e a  +   pa+++ ++++sts a+sr+ +ep   + + +a +a
  KIR60956.1 414 DKQRETWENQYAEARQRWEAHTKQVQTSRAADAEAAANPA--PAVSTGGTTTSTSTAPSRQAEEPAGTLATDEALAA 488
                 7788888899**************************9999..*********************99998888887766 PP

>> RsgI_N  Anti-sigma factor N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0     0.001       2.6      19      36 ..     247     265 ..     244     270 .. 0.83
   2 ?    2.2   0.0     0.069   1.8e+02      21      44 ..     335     359 ..     332     365 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.001
      RsgI_N  19 kikrkgg.mkvGeEiefpe 36 
                  i ++++ ++vG+E+e++ 
  KIR60956.1 247 HIDHPSEvVEVGQEVEVEV 265
                 588999*********9976 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.069
      RsgI_N  21 krkgg.mkvGeEiefpekdiiekkr 44 
                   +++ ++vG E+ ++  di  ++r
  KIR60956.1 335 EIPEQvVQVGSEVMVKVIDIDLERR 359
                 678899*********9988866665 PP

>> DUF2187  Uncharacterized protein conserved in bacteria (DUF2187)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00042       1.1       7      37 ..      31      61 ..      26      74 .. 0.85
   2 ?    0.5   0.0      0.25   6.3e+02       8      35 ..     119     146 ..     112     151 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00042
     DUF2187  7 diieFkkgdlkltGiVekvnenSViVdltim 37
                ++i++ +++  ++G+V+kv  + V+ d++++
  KIR60956.1 31 ETIKYFNDGDIVEGTVVKVDRDEVLLDIGYK 61
                678777776779*****************97 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.25
     DUF2187   8 iieFkkgdlkltGiVekvnenSViVdlt 35 
                 i + k++d  ++G+V++v +   i d++
  KIR60956.1 119 IEKIKDEDGVVRGSVIEVVKGGLILDIG 146
                 4456788888999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 3290.13
//
Query:       KIR60957.1  [L=394]
Description: dephospho-CoA kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-53  181.6   0.2    1.4e-53  181.2   0.2    1.2  1  CoaE      Dephospho-CoA kinase
    2.7e-37  128.4   0.0    4.2e-37  127.8   0.0    1.3  1  GrpB      GrpB protein
    3.8e-05   24.0   0.9     0.0002   21.6   0.9    2.4  1  AAA_28    AAA domain
    4.7e-05   23.6   0.7    0.00017   21.8   0.0    2.2  2  AAA_33    AAA domain
  ------ inclusion threshold ------
      0.031   14.8   0.0       0.18   12.3   0.0    2.3  1  AAA_18    AAA domain


Domain annotation for each model (and alignments):
>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.2   0.2   3.9e-57   1.4e-53       1     178 [.       2     180 ..       2     181 .. 0.96

  Alignments for each domain:
  == domain 1  score: 181.2 bits;  conditional E-value: 3.9e-57
                 EEEEEEESTTSSHHHHHHHHHHTT-EEEEHHHHHHHTTCCTHHHHHHHHHHHGGGCB.TTSSE-HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH CS
        CoaE   1 livgltGgiasGKstvanlfadlgvpivDaDlvArqvvepgsealkkiveeFgeeildedGeLdReaLrkkvFadpeekkaLnallhPlirreikkela 99 
                 l+vgltGgi+sGKs+va+++a+lg  ++D D +Ar+vv+pgse l++iv++Fg+ ++  dG+LdR+aL+ +vFad+++++ L+a++hP +r+++++  a
  KIR60957.1   2 LMVGLTGGIGSGKSAVAARLAALGAVVIDSDRIAREVVAPGSEGLREIVAAFGDRVVGPDGALDRAALGGLVFADQAARRRLEAITHPRVRARTAELAA 100
                 58******************************************************************************************9998766 PP

                 H--S.SEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHCCTSTHHHHHHHHHHS--HHHHHHH-SEEEE-.SSHH CS
        CoaE 100 kles.kyvlldvPLLvEkqlekliervlvvdvelelqveRlvardgvseeevkaiiaaQlseeerlaladvvldNdssla 178
                 ++   ++v+ dvPLLvE +l+ + + v vv+ e+  ++ Rl + +g+s++e++++iaaQ++++ r a+advvl+Nd++l+
  KIR60957.1 101 AAAPdAVVVNDVPLLVEVGLAPTYHLVAVVQTEVAVRLGRLARDRGMSRAEAERRIAAQADDARRDAVADVVLHNDGTLD 180
                 665569************************************999*******************************9986 PP

>> GrpB  GrpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.8   0.0   1.2e-40   4.2e-37       4     157 ..     214     379 ..     211     382 .. 0.88

  Alignments for each domain:
  == domain 1  score: 127.8 bits;  conditional E-value: 1.2e-40
                 -BS--THHHHHHHHHHHHHHHHH...E.EEEEESGGGSTT--B-S-EEEEEEES-SGGGGGGHHH.HHHTT-EE.-T...........TTTSTTEEEEE CS
        GrpB   4 lveydpeWpeqferekarlraal...i.sieHiGSTsvpglaAKpiiDilvvvedledeeelvea.Leaagyellrg...........epgiperrlfv 86 
                 l+ +dp+Wp+q++r++arlr++l     +++H+GST+v g+aA+++iDi+v+v +l++++ + ++ L+aag+                  + +e+rl+ 
  KIR60957.1 214 LTGPDPTWPQQYARLAARLRHVLapaDpRLDHVGSTAVAGIAARDVIDIQVTVPSLAEADGVLAErLAAAGFPR--MpgqwwdsprpaGSDRWEKRLHG 310
                 7789*******************886347*************************988888766555******76..2246666666665677******* PP

                 E-SSS..--EEEEEEETT-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTT-SS-HHHH----HHHHHHH CS
        GrpB  87 kgedeeertvhlhvveagspelerhllfrdyLrahpearaeYaalKrelaakaeedidaYteaKeefikei 157
                 ++ d+ +r+v+lh++++gsp ++ +ll+rd+Lra+p+ ra+Y +lK +laa+a++  +  t+a++++++e 
  KIR60957.1 311 SA-DP-GRPVRLHLRPEGSPGWRYALLMRDHLRADPDRRAAYLTLKGDLAASAPDGGSPNTTARDPWFDEE 379
                 98.55.69**********************************************99999999999999986 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.9   5.7e-08    0.0002       4      95 ..       6     140 ..       3     227 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 5.7e-08
      AAA_28   4 itGgestGKTtlleaLaargypvv..pEaareileeklakgedalpwv.e..........................dllafaervleeqleeeaaa.aa 72 
                 +tGg ++GK+ ++++Laa g +v+   ++are++  +++  +++ ++  +                          +l a+ + +++++ +e+aaa a+
  KIR60957.1   6 LTGGIGSGKSAVAARLAALGAVVIdsDRIAREVVAPGSEGLREIVAAFgDrvvgpdgaldraalgglvfadqaarrRLEAITHPRVRARTAELAAAaAP 104
                 8************************9************9999988875448999999999999999999999999999999999999999888887578 PP

      AAA_28  73 nkvlfcDrglldtlaYaraygg.............e 95 
                 + v++ D  ll ++  a +y+              +
  KIR60957.1 105 DAVVVNDVPLLVEVGLAPTYHLvavvqtevavrlgR 140
                 888999998888888888777744444444444440 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   4.7e-08   0.00017       4     106 ..       6     112 ..       1     118 [. 0.67
   2 ?   -1.4   0.2      0.64   2.3e+03     106     124 ..     147     165 ..     125     175 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.7e-08
      AAA_33   4 lvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqsktdytrvl.drlyqilnelarkalsagrnvildatnls.......rrerarflklarr 94 
                 l G  GsGKs +a rl+ +lgav+++sd + r +++ + + +++   +  dr+ +   + a ++++ g+ v +d+  ++       +r rar  +la  
  KIR60957.1   6 LTGGIGSGKSAVAARLA-ALGAVVIDSDRIAREVVAPGSEGLREIVAAFgDRVVG--PDGALDRAALGGLVFADQAARRrleaithPRVRARTAELAA- 100
                 445679*********99.**************99997777776544433133332..34455677777777777774443333332566677777776. PP

      AAA_33  95 lgvpvrivvvet 106
                 + +p+++vv ++
  KIR60957.1 101 AAAPDAVVVNDV 112
                 444777776655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.64
      AAA_33 106 tdeetlkeRlakRaangdd 124
                  +++++++R+a++a++ ++
  KIR60957.1 147 MSRAEAERRIAAQADDARR 165
                 5778888999988886433 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     5e-05      0.18       1      25 [.       4      45 ..       4     162 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf.................g 25
                ++ltG +G+GK+ +a +L+ ++++                 g
  KIR60957.1  4 VGLTGGIGSGKSAVAARLAALGAVvidsdriarevvapgseG 45
                689***************998655566654444545555441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2920.98
//
Query:       KIR60958.1  [L=702]
Description: excinuclease ABC subunit B [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-34  117.4   0.1    1.3e-33  115.0   0.0    2.1  2  UvrB_inter     UvrB interaction domain
    3.2e-21   74.9   0.5      7e-21   73.8   0.5    1.6  1  UvrB           Ultra-violet resistance protein B
    5.2e-18   65.4   0.1    1.1e-17   64.4   0.1    1.5  1  Helicase_C     Helicase conserved C-terminal domain
    6.3e-09   36.1   0.0    1.7e-08   34.7   0.0    1.7  1  ResIII         Type III restriction enzyme, res subunit
    1.4e-07   31.0   7.0      6e-07   29.0   7.0    2.2  1  UVR            UvrB/uvrC motif
    0.00061   19.6   0.0      0.023   14.4   0.0    2.8  3  AAA_30         AAA domain
     0.0017   18.8   1.0      0.016   15.6   0.1    2.6  2  AAA_16         AAA ATPase domain
     0.0042   17.1   0.0      0.014   15.4   0.0    1.9  1  UB2H           Bifunctional transglycosylase second domain
     0.0043   16.9   0.0      0.093   12.5   0.0    3.1  4  DEAD           DEAD/DEAH box helicase
     0.0071   16.6   1.5      0.025   14.9   0.0    2.7  3  AAA_22         AAA domain
  ------ inclusion threshold ------
      0.014   15.8   0.1        2.4    8.5   0.0    2.7  2  AAA_19         AAA domain
      0.018   15.1   0.2      0.088   12.9   0.0    2.2  2  DUF87          Helicase HerA, central domain
      0.028   14.3   0.0      0.075   12.9   0.0    1.7  1  Helicase_RecD  Helicase
        0.1   12.6   0.1       0.49   10.4   0.1    2.2  2  AAA_5          AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> UvrB_inter  UvrB interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   0.0     1e-36   1.3e-33       3      91 .]     168     255 ..     166     255 .. 0.98
   2 ?   -1.0   0.0       1.6   2.1e+03      51      75 ..     474     498 ..     470     506 .. 0.75

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 1e-36
  UvrB_inter   3 lkvgqkidreellrkLvelqYerndvelkrGtFrvrGdtveifpasaeevairieffgdeiesireidpltgkslekleeitifPakhf 91 
                 + vgq++dr++llr+Lv++qY+rnd+ ++rGtFrvrGdt+ei+pa+ ee a+r+e+fgde+e++++++pltg++++++++++ifPa+h+
  KIR60958.1 168 VAVGQELDRDQLLRRLVDIQYTRNDMAFQRGTFRVRGDTLEIIPAY-EELAVRVELFGDEVEKLYYLNPLTGDVVREVDSLMIFPATHY 255
                 789*******************************************.8****************************************9 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
  UvrB_inter  51 evairieffgdeiesireidpltgk 75 
                 e+ ir+     e++++r+++ l + 
  KIR60958.1 474 ENGIRVRYLHSEVDTLRRVELLREL 498
                 5678899999999999988877655 PP

>> UvrB  Ultra-violet resistance protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.5   5.4e-24     7e-21       1      42 [.     558     599 ..     558     600 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 5.4e-24
                 EE-SS--HHHHHHHHHHHHHHHHHHHHHHHHT------XXXX CS
        UvrB   1 lYADkiTdSMkkAideTerRReiQeaYNeehgItPktikKki 42 
                 +YADkiT SM +AideT+rRR++Q a+Ne+hgI P+ ++Kki
  KIR60958.1 558 MYADKITPSMAEAIDETNRRRAKQVAHNEAHGISPEPLRKKI 599
                 9****************************************9 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.1   8.3e-21   1.1e-17      11     109 ..     447     550 ..     437     552 .. 0.88

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 8.3e-21
                 HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.....SSHHHHHHH CS
  Helicase_C  11 kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.....rnvtsyiqr 103
                  ++e+++++l+ + t++++e+  ++ll ++gi+v +lh+e  +  r e l++ +kge+dvL+  + + +G+d+p+v+lV ++d++     r+ +s+iq 
  KIR60958.1 447 LRTERDERVLVTTLTKKMAEDlSDYLL-ENGIRVRYLHSEVDTLRRVELLRELRKGEYDVLVGINLLREGLDLPEVSLVAILDADkegflRSGRSLIQT 544
                 36788999*********9998777775.667******************************************************77776667****** PP

                 HTTSSS CS
  Helicase_C 104 iGRtgR 109
                 iGR++R
  KIR60958.1 545 IGRAAR 550
                 *****9 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.3e-11   1.7e-08       3     119 ..      19     127 ..      17     157 .. 0.72

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.3e-11
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--. CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke....igkkvsgdkkkak 97 
                 ++   Q  ai++l+  +  ++d++ ++  aTGtGK+ + a l+erl++      +l+l+p+k+l+ q+ +ef ++l+ ++ e        ++ + +++ 
  KIR60958.1  19 QPAGDQPAAIDDLERRVR-RGDRNTVLLGATGTGKSATTAWLVERLQR-----PTLVLAPNKTLCAQLAKEFGELLPHNAVEyfvsYYDYYQPEAYIP- 110
                 56667999******9999.****************************9.....8******************88877765333333222233333333. PP

                 ......-SEEEEEHHHHHHTH. CS
      ResIII  98 ekdstnkkilvttiqsldadse 119
                      +++ ++++ +s++++ e
  KIR60958.1 111 -----QTDTYIEKDSSINEEVE 127
                 .....55556666666655553 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   7.0   4.6e-10     6e-07       2      36 .]     658     692 ..     657     692 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 4.6e-10
         UVR   2 klikeLeeemeeAaenedFEkAAklRDqinalkkq 36 
                 +li eL ++m  Aa++++FE+AA++RD+++ lkk+
  KIR60958.1 658 QLIQELNDQMLAAARELQFELAARIRDEVADLKKE 692
                 689*****************************985 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.8e-05     0.023      14      76 ..      35      96 ..      21     147 .. 0.77
   2 ?    1.5   0.0      0.17   2.2e+02      43      81 ..     449     490 ..     440     518 .. 0.76
   3 ?   -2.5   0.1       2.8   3.6e+03     151     175 ..     603     631 ..     600     642 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.8e-05
      AAA_30 14 ltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelg..ieastiakl 76
                +  gdr +vl G+ GtGK+ + + l+e ++   ++ ++lAp+++  ++La+e+g  ++ + ++ +
  KIR60958.1 35 VRRGDRNTVLLGATGTGKSATTAWLVERLQ---RPTLVLAPNKTLCAQLAKEFGelLPHNAVEYF 96
                5678889**************999998888...778**************999844455555555 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.17
      AAA_30  43 eaaggrviglAptgkaAkvLae...elgieastiakllkrlk 81 
                 +++ +rv++ + t+k+A++L++   e gi+ + +++ +++l+
  KIR60958.1 449 TERDERVLVTTLTKKMAEDLSDyllENGIRVRYLHSEVDTLR 490
                 445789***************766666888888888777766 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.8
      AAA_30 151 LtevvRq...ke.seeraaalalregdae 175
                 L++++R    +e s+   aa++l++g+a+
  KIR60958.1 603 LDDIYREaedTEsSRVGGAARQLSRGKAP 631
                 78899994332225667789999999887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.2e-05     0.016      10      57 ..      26      71 ..      22     185 .. 0.79
   2 ?    0.9   0.1      0.42   5.4e+02     106     128 ..     627     666 ..     538     697 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
      AAA_16 10 eqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflr 57
                +++ ++ +rvr+g+ ++++l G+ G+GKs+    l ++l++   ++l+
  KIR60958.1 26 AAIDDLERRVRRGD-RNTVLLGATGTGKSATTAWLVERLQRP-TLVLA 71
                56777778999999.9999*************9999899998.34433 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.42
      AAA_16 106 a................avpelagaeasrllellkrll.a 128
                 +                a+p+ +g ++ +l++l+++l  +
  KIR60958.1 627 RgkapvketrsrsragaAGPSREGMARADLAQLIQELNdQ 666
                 1444455555555555555555555556666666665531 PP

>> UB2H  Bifunctional transglycosylase second domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.1e-05     0.014       3      42 ..     170     209 ..     168     211 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
        UB2H   3 pGaalsaaqleqeLellgYrkvsnvtrpGeyavsgnriel 42 
                  G++l+++ql + L +++Y +++ + + G+++v+g+++e+
  KIR60958.1 170 VGQELDRDQLLRRLVDIQYTRNDMAFQRGTFRVRGDTLEI 209
                 79***********************************998 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   7.3e-05     0.093      13      73 ..      38      90 ..      23     148 .. 0.78
   2 ?   -2.7   0.0       3.3   4.2e+03     159     169 ..     379     402 ..     339     407 .. 0.42
   3 ?   -1.4   0.0       1.3   1.7e+03      58     103 ..     459     508 ..     429     530 .. 0.56
   4 ?   -0.7   0.0       0.8     1e+03     120     157 ..     577     614 ..     539     621 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.3e-05
                TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 13 gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky 73
                g+++ ++ ++TG+GK++     +++++       +  +l+++P + L+ q ++++ +++ +
  KIR60958.1 38 GDRNTVLLGATGTGKSATT-AWLVERL-------QRPTLVLAPNKTLCAQLAKEFGELLPH 90
                56899999*******9884.4555455.......3467****************9988765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.3
                 T.............SEEEEEESSB CS
                 x.............xxxxxxxxxx RF
        DEAD 159 q.............rqvivlSATl 169
                 +              q+++lSAT+
  KIR60958.1 379 DnrplrfdeflervGQLVFLSATP 402
                 133333344443334466666665 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHTTTSTSEEEEEET...TSSHHHHHHHHHTT.CSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx.xxxxxx RF
        DEAD  58 eLaeqtlnnlkkfkkyidlrvlliig...gvaardqlskldng.vdivvg 103
                  L+++++++l+ ++ + ++rv  + +     ++ + l++l++g +d++vg
  KIR60958.1 459 TLTKKMAEDLSDYLLENGIRVRYLHSevdTLRRVELLRELRKGeYDVLVG 508
                 34444444444444444444443333000333334444444545666665 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.8
                 TTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 120 sqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk 157
                 ++ + +   Ea++++ +  +++i+ il  + +  +d++
  KIR60958.1 577 RRAKQVAHNEAHGISPEPLRKKIHDILDDIYREAEDTE 614
                 45555667899**9999999999999999988887766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.9e-05     0.025       4      63 ..      38      83 ..      34     147 .. 0.70
   2 ?   -2.6   0.0       4.9   6.3e+03      54     112 ..     439     498 ..     412     501 .. 0.51
   3 ?   -1.5   0.3       2.1   2.7e+03      70      91 ..     631     672 ..     564     693 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.9e-05
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellra 63
                +++ +v+ G +GtGK+ + ++l+e+l+        rp+  +v +p++t    l+ +l+++
  KIR60958.1 38 GDRNTVLLGATGTGKSATTAWLVERLQ--------RPT--LVLAPNKT----LCAQLAKE 83
                78899*********************5........454..34444444....44444444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.9
      AAA_22  54 kdllrellralglelka.erlsseellealeqalraravielliiDEaqhlrseealeeL 112
                 +dl++e+   ++++     +  ++ + e l ++l + + ++  +  E++ lr+ e+l+eL
  KIR60958.1 439 DDLMHEIKLRTERDERVlVTTLTKKMAEDLSDYLLENGIRVRYLHSEVDTLRRVELLREL 498
                 455555555555433332222222333333333333333444444555555445555555 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.1
      AAA_22  70 a....................erlsseellealeqalrarav 91 
                                      +r+++ +l++ l++++ a+a+
  KIR60958.1 631 PvketrsrsragaagpsregmARADLAQLIQELNDQMLAAAR 672
                 033334444444444444444555555555555555555555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0018       2.4      10      62 ..      39      84 ..      32     158 .. 0.59
   2 ?    4.2   0.1     0.039        50      31      75 ..     445     485 ..     433     587 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0018
      AAA_19 10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerl 62
                +++ ++++  GtGK+ ++   v+ l++ +       l++a+++  + +l+++ 
  KIR60958.1 39 DRNTVLLGATGTGKSATTAWLVERLQRPT-------LVLAPNKTLCAQLAKEF 84
                578899***********998888887654.......44555555444444444 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.039
      AAA_19  31 vallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrl 75 
                 ++l    +++  e++l+ ++t++ a+ l++ l + g + + +H+ 
  KIR60958.1 445 IKL----RTERDERVLVTTLTKKMAEDLSDYLLENGIRVRYLHSE 485
                 333....3333499****************885555555444433 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.9e-05     0.088      28      48 ..      44      64 ..      39      75 .. 0.86
   2 ?   -1.6   0.1       1.8   2.3e+03     151     151 ..     640     640 ..     549     694 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.9e-05
       DUF87 28 ilgsTGsGKSntvavLleell 48
                 lg TG+GKS t+a L+e+l 
  KIR60958.1 44 LLGATGTGKSATTAWLVERLQ 64
                69****************996 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.8
       DUF87 151 k 151
                 +
  KIR60958.1 640 R 640
                 2 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.9e-05     0.075       1     102 [.      43     152 ..      43     167 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.9e-05
  Helicase_RecD   1 vltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglke...............eekkkkaekaelrvrkqrieyiap 81 
                    vl ++ G+GKSa+ + ++++l +      lv ap+k+  ++l + + + l +  +++               ++++  +++ +++ + +r+++ a 
     KIR60958.1  43 VLLGATGTGKSATTAWLVERLQRP----TLVLAPNKTLCAQLAKEFGELLPHNAVEYfvsyydyyqpeayipQTDTYIEKDSSINEEVERLRHSAT 134
                    688999********9999999887....79********************9999988999999998888876666666666677777888888888 PP

  Helicase_RecD  82 dellklkeqadllvvDEAAai 102
                     +ll+++   d++vv   +ai
     KIR60958.1 135 MSLLTRR---DVVVVATVSAI 152
                    8887765...88888666555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00039      0.49       2      33 ..      42      73 ..      41      84 .. 0.88
   2 ?   -3.4   0.0       6.8   8.7e+03      71      87 ..     123     139 ..     107     142 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00039
                EEEE--SSSSHHHHHHHGGGGBS--EEEEE-- CS
       AAA_5  2 vlLvGppGtgKselaerlaaalnreveyvqlt 33
                 +L+G++GtgKs  +  l ++l+r++++ + +
  KIR60958.1 42 TVLLGATGTGKSATTAWLVERLQRPTLVLAPN 73
                68**********************99987655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.8
                 EESGGG--HHHHHHHHH CS
       AAA_5  71 lDEveraesevlnsLls 87 
                  +Ever++ ++++sLl+
  KIR60958.1 123 NEEVERLRHSATMSLLT 139
                 58999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 4757.14
//
Query:       KIR60959.1  [L=256]
Description: hypothetical protein TK50_24460 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-39  133.4   0.0    1.2e-38  133.0   0.0    1.2  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.3e-28   99.8   0.0    2.9e-28   98.7   0.0    1.5  1  adh_short     short chain dehydrogenase
    9.3e-08   32.2   0.0    1.3e-07   31.8   0.0    1.1  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   0.0   2.1e-42   1.2e-38       1     234 []      10     253 ..      10     253 .. 0.90

  Alignments for each domain:
  == domain 1  score: 133.0 bits;  conditional E-value: 2.1e-42
                   TTT..TSHHHHHHHHHHHTT-EEEEEESSGGH.H.......HHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS CS
  adh_short_C2   1 Gaa..sgIGraiAkalaeeGaevvltdlneea.k.......krveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkg 85 
                   G+    gIG+a+A+ala++G +++lt l + +         + v +l +elg ++  +++D  d+++ +alv e+v++fg+lD +v +  ++++  +
    KIR60959.1  10 GVSrrAGIGAAVARALASAGHRLLLTGLPDYDdTqpyggdpEGVPALLAELGDRAahVRADLLDPSAPAALVGEAVHRFGRLDTVVAAHTYSTQ--T 104
                   566668********************88765532122233367999******88448***********************************99..* PP

                   -GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.....CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCT CS
  adh_short_C2  86 pfletsreefdraldvnlyslfllakaalplmkeg.....gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTl 177
                   p+  ++  e+dr l vn+++++lla+a++  +++g     g++v  ss +    +p   ay+a+Kaale+lt +l   l pkgi+vN+v pgp++T 
    KIR60959.1 105 PLGGLDATEIDRHLLVNVRATLLLAEAFAAGFAAGsdtdgGRLVLFSSGQRLGPMPTELAYAASKAALENLTVQLSPLLMPKGITVNCVNPGPTDTG 201
                   ******************************5555556777*********99999******************************************9 PP

                   GGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 178 aasgikgfdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                    a+         + +++  p gr+gtpe+ a+++ fL+s +a++itGq++   gG++
    KIR60959.1 202 YAEPG-----AHALVARLFPGGRWGTPEDAARLVRFLCSADARWITGQVIDSEGGFN 253
                   98754.....47888999*************************************96 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   4.8e-32   2.9e-28       2     188 ..       5     204 ..       4     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 4.8e-32
                 EEEEESTTS..HHHHHHHHHHHHTT-EEEEEESCH........HHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS-- CS
   adh_short   2 vvlvtGass..GIGraiakelakeGakvvvvdrse........ekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgs 90 
                 ++lvtG s+  GIG a+a++la++G ++++++  +         + e v + l e+g++a ++++D+ d ++  alv +av ++g+ld +v+  + + +
  KIR60959.1   5 IALVTGVSRraGIGAAVARALASAGHRLLLTGLPDyddtqpygGDPEGVPALLAELGDRAAHVRADLLDPSAPAALVGEAVHRFGRLDTVVAAHTYSTQ 103
                 79****98555******************97654311111111345667777777799***************************************** PP

                 SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH...HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHH CS
   adh_short  91 gpfselseeewervievNltgvflltravlpaml...kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdm 186
                 +p   l+++e++r + vN+ +++ll++a++  +    +  +Gr v  sS + + p++   aY+AsKaa++ lt +l+  l p+gi+vn+v+PG++dT+ 
  KIR60959.1 104 TPLGGLDATEIDRHLLVNVRATLLLAEAFAAGFAagsDTDGGRLVLFSSGQRLGPMPTELAYAASKAALENLTVQLSPLLMPKGITVNCVNPGPTDTGY 202
                 ********************************99999999*********************************************************97 PP

                 HH CS
   adh_short 187 ak 188
                 a+
  KIR60959.1 203 AE 204
                 75 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   2.1e-11   1.3e-07      10     160 ..      15     176 ..       5     193 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 2.1e-11
                 SHHHHHHHHHHHHHHS-EEEEE-SS.......--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--HH CS
          KR  10 GgLGlelarwlaekgarhlvllsRsa.....aadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemtae 103
                  g+G ++ar la+ g r l+l++        +   d +   a l++lg +   v+aD+ d++a +al+ e+ ++++++  v+ a   + +++l  ++a 
  KIR60959.1  15 AGIGAAVARALASAGHR-LLLTGLPDyddtqPYGGDPEGVPALLAELGDRAAHVRADLLDPSAPAALVGEAVHRFGRLDTVVAAHTYSTQTPLGGLDAT 112
                 69***********9987.666776643555434444445667778889999999********************************************* PP

                 HHHHHHTTTTHHHHHHHHHTTT.......S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHH CS
          KR 104 dleqvlapKvkGawnLhelled.......esldffvlfSSiagllgsagqanYaaaNaflDala 160
                 ++++ l   v+++  L e+++        ++   +vlfSS   l  ++++ +Yaa  a l+ l 
  KIR60959.1 113 EIDRHLLVNVRATLLLAEAFAAgfaagsdTDGGRLVLFSSGQRLGPMPTELAYAASKAALENLT 176
                 ********************99888885566678***********************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1891.32
//
Query:       KIR60960.1  [L=332]
Description: tellurium resistance protein TerC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-56  189.7   5.4    3.6e-56  189.7   5.4    1.8  3  TerC      Integral membrane protein TerC family
  ------ inclusion threshold ------
      0.094   12.6   0.3       0.55   10.1   0.0    2.4  2  COX14     Cytochrome oxidase c assembly
       0.15   12.3   0.1       0.58   10.4   0.1    2.0  1  DUF4381   Domain of unknown function (DUF4381)
        6.2    6.5   7.5         11    5.7   0.9    3.0  2  DUF2244   Integral membrane protein (DUF2244)


Domain annotation for each model (and alignments):
>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.1   4.7e+03     134     173 ..       7      46 ..       5      53 .. 0.50
   2 !  189.7   5.4   8.1e-60   3.6e-56       2     180 ..      70     273 ..      69     274 .. 0.97
   3 ?   -2.8   0.0      0.99   4.5e+03     136     159 ..     301     324 ..     290     329 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.1
        TerC 134 vitavilsilvlrflakllakllerfptlkylalalllli 173
                 v+++ +++++++ ++  l++      p ++   l++ +++
  KIR60960.1   7 VWAGTLVALTAVLVVDLLIIGRRPHEPSVRESSLWVGFYV 46 
                 5555555555555555555554444444444444444444 PP

  == domain 2  score: 189.7 bits;  conditional E-value: 8.1e-60
        TerC   2 tlvlleivLsiDNlvviallvkk..lpeeqqkkalllGilgAlvlRillillavallelfdlilligglfLlytavkellekr......lenklvkeek 92 
                 t++l e++Ls+DNl+v+++++++  +p+++q+k+ll+Gi++Al++R  +i++++al+++f+++++i+g+fL+ytav++ ++ +       en l ++ +
  KIR60960.1  70 TGWLTEYSLSVDNLFVFVIIMARfgVPRQYQQKVLLIGIVLALLMRGGFIAAGAALITQFSWVFYIFGAFLIYTAVNLARQGEpdedefSENLLIRWSR 168
                 799*******************99*******************************************************9988999996559999**** PP

        TerC  93 kkkkktkst.................llavviqielaDlvfslDSvlaavaitsdlfivitavilsilvlrflakllakllerfptlkylalallllig 174
                 k  + ++++                 +l v+i+i ++Dl+f+lDS++a+++it+++++v+ta+++++++lr+l++ll  ll+r+ +l+y+++++l++ig
  KIR60960.1 169 KALPISRDYdgakmttheagrrlftpMLIVMIAIGTTDLIFALDSIPAIFGITQEPYLVFTANVFALMGLRQLYFLLGGLLDRLIYLSYGLAVVLGFIG 267
                 *****9999****************************************************************************************** PP

        TerC 175 vklvle 180
                 vklvle
  KIR60960.1 268 VKLVLE 273
                 ****97 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.99
        TerC 136 tavilsilvlrflakllakllerf 159
                 + vil++l ++++a+l+ ++ +r 
  KIR60960.1 301 LTVILGTLSVATVASLIKSARDRR 324
                 567777777777777777666665 PP

>> COX14  Cytochrome oxidase c assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.4      0.59   2.7e+03      18      28 ..       9      19 ..       7      22 .. 0.79
   2 ?   10.1   0.0   0.00012      0.55      24      52 ..     301     329 ..     299     331 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.59
       COX14 18 VltLiGvTlya 28
                + tL+++T++ 
  KIR60960.1  9 AGTLVALTAVL 19
                57999999986 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00012
       COX14  24 vTlyaggllvytvysygkynrkqkaelie 52 
                 +T++ g l v tv s++k  r +++el++
  KIR60960.1 301 LTVILGTLSVATVASLIKSARDRRRELAS 329
                 7************************9876 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00013      0.58      10      50 ..     287     326 ..     275     331 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
     DUF4381  10 epvswwPpapGwwlllaalllllllvlalwllrrrkrnrre 50 
                 +pv w P  p w  l  ++l  l ++ ++ l++  + +rre
  KIR60960.1 287 DPVAWAPHIPIWLSLT-VILGTLSVATVASLIKSARDRRRE 326
                 7999******955555.666677777777777755544554 PP

>> DUF2244  Integral membrane protein (DUF2244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.9    0.0024        11      15      56 ..     103     144 ..      95     154 .. 0.67
   2 ?    3.1   0.9     0.015        69      28      50 ..     252     274 ..     227     278 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0024
     DUF2244  15 lllalalvslvialafllaGawpvlpFaglevlalalafrvs 56 
                 +ll+ +++ l++  +f++aGa ++  F ++  +  a+ ++  
  KIR60960.1 103 VLLIGIVLALLMRGGFIAAGAALITQFSWVFYIFGAFLIYTA 144
                 344445667788999************987555544444444 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.015
     DUF2244  28 lafllaGawpvlpFaglevlala 50 
                 l+ l+ G+ +vl+F+g+++++ a
  KIR60960.1 252 LIYLSYGLAVVLGFIGVKLVLEA 274
                 67899************998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2199.91
//
Query:       KIR60961.1  [L=365]
Description: muconate cycloisomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-52  177.7   4.2    2.4e-52  177.7   4.2    2.0  2  MR_MLE_C  Enolase C-terminal domain-like
    8.9e-20   71.1   0.3    2.4e-19   69.7   0.3    1.7  1  MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N
    0.00017   20.8   0.1     0.0003   20.0   0.1    1.3  1  MAAL_C    Methylaspartate ammonia-lyase C-terminus


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.4     0.033     2e+02      26      52 ..      78     104 ..      62     112 .. 0.79
   2 !  177.7   4.2   4.1e-56   2.4e-52       2     216 ..     144     355 ..     143     360 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.033
                 HHHHHHHHHHHHHHHHTTTSTSEEEEE CS
    MR_MLE_C  26 dvaedvervravreavgpgddvdlmvD 52 
                 d ++ v+r+++vr+av   + ++ +vD
  KIR60961.1  78 DADDLVARCAEVRRAVAGNEAAKAAVD 104
                 578889999999999966666666666 PP

  == domain 2  score: 177.7 bits;  conditional E-value: 4.1e-56
                 HHHHHHHHHHHHT-SEEEEETSSSHHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGG..GTESEEESSSSTTTHHHHHHHHHHHH. CS
    MR_MLE_C   2 laeearelvaeqgfravKlkvggddvaedvervravreavgpgddvdlmvDanqawdlatAirvarelee..ldllwlEEPvppeddleglaelrara. 97 
                 la++ar+++ e gf  +Klkvg d  a d+ervravr+avgp++  ++++Danq+w++++A+rv+r +e+  l+++++E+Pv+++ dl+gla+++ ++ 
  KIR60961.1 144 LAAAARQRRGE-GFSVLKLKVGTD-AAGDLERVRAVRAAVGPDV--RIRLDANQGWTPREAVRVIRGIEDagLGVELVEQPVSRW-DLDGLAWVS-DRv 236
                 67888886666.********9996.***************8855..**********************765799**********6.6********.667 PP

                 SSEEEESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCS.SHHHHHHHHHHHHTTTTBEEEEEEGGGGHTSGCSBSS CS
    MR_MLE_C  98 sipiaagEslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgs.gglglaaslhlaaaipnllileyfldaelleeellee 195
                 ++p+ a+Es++++ d+ e+++++a+d+v+++++++gG+ +ar++++la+++gv  +++s++ +++gl a+++l aa+  + + + +  a+ l +  + +
  KIR60961.1 237 GVPVLADESVFGVRDLVEVIRRRAADMVNVKLAKCGGLHAARTLLDLAAEHGVGTVVGSMMeSQVGLGAAASLVAAHGTSAVSDLDA-AWWLAWSPVRG 334
                 ***********************************************************8659**************7555555555.555******** PP

                 SSEEETTEEECTSSSBTSSEB CS
    MR_MLE_C 196 plevedGrvtvpdgpGlGvel 216
                  ++++  +v +pd+pGlG++ 
  KIR60961.1 335 GIRYDGATVVLPDAPGLGIDS 355
                 ******************985 PP

>> MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.3     4e-23   2.4e-19       6     117 .]       8     124 ..       3     124 .. 0.88

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 4e-23
                 EEEEEEEEC.EEEETTEEEEEEEEEEEEEEECTTEEEEEEEE-STT....GHHHHHHHHHHHHHHHHTTSBTTHHHHHHHHHHHHCSSCHHHHHHHHHH CS
    MR_MLE_N   6 vveeavklr.PvqlavttvqkqslvlvkietseGvvGigeatsvgg....raetikaelddhlapllvgkdaanisdlaqllkravlgnmsAkaaidmA 99 
                 + +   +l+ P+++a+    +    +v++  ++G  G gea  v      +    +a +++ lap lvg+da+ + +   ++ rav gn +Akaa+d+A
  KIR60961.1   8 THRLSAPLHtPFVTALRRTTTTDTLIVELVDDDGRSGFGEAPQVWQvtgaSLAGAEACVREMLAPGLVGRDADDLVARCAEVRRAVAGNEAAKAAVDTA 106
                 4555667888******999999999999999*********976533333577789999***************************************** PP

                 HHHHHHHHTTSBHHHHTT CS
    MR_MLE_N 100 lwDlkakalnlpladLlG 117
                 l+Dl+a++l++pl+ LlG
  KIR60961.1 107 LHDLAARRLGVPLVRLLG 124
                 *****************9 PP

>> MAAL_C  Methylaspartate ammonia-lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1     5e-08    0.0003     138     203 ..     236     300 ..     230     319 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5e-08
      MAAL_C 138 ikvelvaDeWcntledirefvdaeaadlvqiktPDlGginntieavlyckekgvgaylGGscnetd 203
                 + v ++aDe   ++ d+ e + ++aad+v +k    Gg++ +   +  + e+gvg+ +G    e +
  KIR60961.1 236 VGVPVLADESVFGVRDLVEVIRRRAADMVNVKLAKCGGLHAARTLLDLAAEHGVGTVVGS-MMESQ 300
                 7899***************************************************99874.44554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2612.64
//
Query:       KIR60962.1  [L=265]
Description: protein tyrosine phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-62  209.6   0.0      7e-62  209.4   0.0    1.0  1  Y_phosphatase3  Tyrosine phosphatase family
  ------ inclusion threshold ------
      0.093   12.3   0.0       0.13   11.8   0.0    1.2  1  Y_phosphatase2  Tyrosine phosphatase family
       0.18   11.3   0.0       0.23   11.0   0.0    1.1  1  Y_phosphatase   Protein-tyrosine phosphatase


Domain annotation for each model (and alignments):
>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.4   0.0   1.2e-65     7e-62       3     231 ..       8     264 ..       6     265 .] 0.91

  Alignments for each domain:
  == domain 1  score: 209.4 bits;  conditional E-value: 1.2e-65
  Y_phosphatase3   3 legvsNfRDlGgyptadgrkvrpgvlyRsaelsklteadlakLadlgirtviDLRspeEreaeap...lega.ryvhlpv............... 78 
                     l g++N+RDlGg+   dgr+vr g+l R+ +l +lt++dl +L ++  + v+DLR+++E++a ap   l+g  r+v+lpv               
      KIR60962.1   8 LVGAPNARDLGGMVGLDGRRVRAGRLVRTPALGRLTDEDLPVLGKIAPACVVDLRDDSEIAA-APpnrLPGEpRVVRLPVydpahpvftavsevl 101
                     7799*******************************************************887.5535544557*******************998 PP

  Y_phosphatase3  79 ..eea.aeeekeeeeaeetlaelYrelle..sakkayrkvfealad.ee.pvlfHCtaGKDRTGvlaalllsllGvdeedivaDYlltneyleel 166
                       +++ ae++ + + + +++ae+Yr +++  +a++ +  + +  ad  + p+lfHC+aGKDRTG+l+++ll++lGvde++i aDYl+tn+++e+l
      KIR60962.1 102 lgHDLrAETALALQGSPAAMAEIYRWFVTgeAARAGFGGAARLAADaGNlPLLFHCSAGKDRTGWLSVVLLTALGVDEAAIRADYLRTNAQTESL 196
                     86334388899999999************99999************555*********************************************9 PP

  Y_phosphatase3 167 rerlkakleeellaea...leellsvrpeyleaaldaieekygsvegYlreelglseeeiealrerll 231
                     +e + a++++++ + a   +++l++vr+eyl+aa++++++ +gs+++Ylr++lgl+ + ++alr++ll
      KIR60962.1 197 KEVVLAAMRARQPDLAeaaIRPLMEVREEYLDAAYAEVRRVHGSFDAYLRDGLGLTRAHLAALRDNLL 264
                     9999999998844444556***********************************************98 PP

>> Y_phosphatase2  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.2e-05      0.13      88     132 ..     147     191 ..     140     206 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.2e-05
                     -GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHHHHC CS
  Y_phosphatase2  88 nkenypvllhckrGkhrtglvigclRklqkWslasilnEyrrFsg 132
                     +  n p+l hc+ Gk rtg +  +l    + + a i ++y r ++
      KIR60962.1 147 DAGNLPLLFHCSAGKDRTGWLSVVLLTALGVDEAAIRADYLRTNA 191
                     7899***************98777766666666666666666555 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.9e-05      0.23     168     192 ..     148     172 ..     118     198 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.9e-05
                    TTSS-EEEECSSSSHHHHHHHHHHH CS
  Y_phosphatase 168 aksgpvvVhCsaGvgRtgtfvaldi 192
                    a + p++ hCsaG  Rtg + ++ +
     KIR60962.1 148 AGNLPLLFHCSAGKDRTGWLSVVLL 172
                    5788**************9977654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1826.21
//
Query:       KIR60963.1  [L=288]
Description: beta-lactamase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-41  139.6   0.0    1.3e-40  139.2   0.0    1.1  1  Beta-lactamase2  Beta-lactamase enzyme family
    2.5e-06   26.9   1.9    0.00091   18.6   0.0    2.1  2  Beta-lactamase   Beta-lactamase


Domain annotation for each model (and alignments):
>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.2   0.0   1.4e-44   1.3e-40      10     202 .]      33     248 ..      25     248 .. 0.94

  Alignments for each domain:
  == domain 1  score: 139.2 bits;  conditional E-value: 1.4e-44
                      STTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEEGGHHH..............HTSSSTSGGGSTTSEEEHHHHHHHHHHTT-HHHHHHHHH CS
  Beta-lactamase2  10 nadeefpaaStiKvpillalleavlegklslderltltaed..............ivggsgilqklpgktlslrdlltlmiavSDNtAtnlLid 89 
                       +d +++aaSt+Kv +llal +a+++g+l+ld ++ ++ e                 + + +  +++g++ +lr l+++mi+ S N Atnl+++
       KIR60963.1  33 HPDATHYAASTMKVAVLLALHRAAEAGTLDLDAPVDVRNEFdsalpdaprfacarHYDNDEAVWEREGGHAPLRWLAERMIVRSSNLATNLCLR 126
                      68999*********************************9999***********9544777888888999************************* PP

                      HHTHHHHHHHHHHCTHTTSB--SHTTCCHHHTTSSTTEE-HHHHHHHHHHHHHT.....TSSHHH...HHHHHHHT-STTTTTTTTTTTTSEEE CS
  Beta-lactamase2  90 rlgleavnawlkelglretrlrrklpdleaadkdkrntttardlarllealarg.....ellspe...elleilsnqqfrdrlaaglpegvrva 175
                      ++gl av +  +++g r+ + +r  +d+ a++++ +n  ta+dla ll  l  g      l sp+    +l++l +q fr+ laaglp+gvr+a
       KIR60963.1 127 HVGLPAVADAWAAAGARHSVTGRGIEDFAAREAGITNLVTAADLAALLGGLTAGatrpgPLASPAgcaAMLDVLFAQEFREDLAAGLPDGVRIA 220
                      ***99999999999***************************************766555788888***************************** PP

                      EEEEEETTEEEEEEEEEE.TTEEEEEEE CS
  Beta-lactamase2 176 hKtGeldgvrhdvGivya.dgrpyvvav 202
                      hK G+++gvrh +G+v++ d +pyv++v
       KIR60963.1 221 HKNGWVRGVRHGAGVVHPaDAPPYVLVV 248
                      **************************98 PP

>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     1e-07   0.00091      44      80 ..      32      86 ..      15     113 .. 0.72
   2 !    7.8   0.7   0.00019       1.7     186     322 ..     131     262 ..     116     270 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1e-07
                    ESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBG..................G CS
  Beta-lactamase 44 vtadtlfriaSvtKtftaaavlqlveeGkldLddpV..................s 80
                     ++d  +  aS+ K+ + +a+++ +e+G+ldLd+pV                  +
      KIR60963.1 32 RHPDATHYAASTMKVAVLLALHRAAEAGTLDLDAPVdvrnefdsalpdaprfacA 86
                    345999999***************************7777775555555555552 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00019
                     TGGGGGGBEEEEEEETCEEECSCETTHHHHCTTTBEEEEHHHHHHHH....HHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEE CS
  Beta-lactamase 186 pesgdprdaagytgngpearappanlpaeaegagglistardlarfl....glalegglllsaetlaqltaklssgttrpagiraglglGwvlad 276
                     p+ +d++ aag+   ++ + ++   + a++e++     ta+dla++l     +a ++g l s++  a++       + + +  +agl+ G ++a+
      KIR60963.1 131 PAVADAWAAAGA---RHSVTGRGIEDFAAREAGITNLVTAADLAALLggltAGATRPGPLASPAGCAAML-DVLFAQEFREDLAAGLPDGVRIAH 221
                     444444444444...3333333333333333444567899*******55543333333333333333332.333444444555777788999998 PP

                     ECCHTEEEEEEESTEEEEEEEECGG.TEEEEEEESBCSSHHHHHHHH CS
  Beta-lactamase 277 ktgapgtfghtGggygtyvfvdpea.nlvvavltnrdppnedaaeda 322
                     k+g  +++ h+  g         +a ++v++v t++dp    +a+d 
      KIR60963.1 222 KNGWVRGVRHGA-GVVH----PADApPYVLVVCTTGDPA-GGGAADG 262
                     888866666666.5555....666667777777777775.5544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2147.40
//
Query:       KIR60964.1  [L=622]
Description: GTP-binding protein TypA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.7e-53  178.8   0.0    1.3e-52  178.2   0.0    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    3.5e-22   78.2   0.0    8.3e-22   77.0   0.0    1.6  1  EFG_C        Elongation factor G C-terminus
    3.7e-11   43.3   0.1      1e-10   41.8   0.1    1.8  1  GTP_EFTU_D2  Elongation factor Tu domain 2
      7e-07   29.3   0.0    1.5e-06   28.3   0.0    1.6  1  MMR_HSR1     50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.2   0.0   2.8e-56   1.3e-52       3     191 ..       7     207 ..       5     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: 178.2 bits;  conditional E-value: 2.8e-56
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE....TTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEE CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle....ketkkylinliDtPGHvdFskevirglrvlDga 97 
                 +rn++ii+hvDhGKtTL+d++l ++ga   +ge++e  rv+D+++ Ere+giTi ++++ +     + ++  +in+iDtPGH+dF  ev+rgl ++Dg+
  KIR60964.1   7 LRNVAIIAHVDHGKTTLVDAMLRQAGAYGARGETTE--RVMDSMDLEREKGITILAKNTGVRylpaDGSEPVTINIIDTPGHADFGGEVERGLTMVDGV 103
                 79****************************999776..99*********************9998669999**************************** PP

                 EEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTB................T CS
    GTP_EFTU  98 vlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkge................g 180
                 vl+vda+eG+ pqt+ vlr al+ ++pii++iNK+Dr++a++ke+v++ ++ +     +l++ +e+   ++p+v+++a +g                  
  KIR60964.1 104 VLLVDASEGPLPQTRFVLRKALRARMPIILVINKVDRPDARIKEVVDDTYELF----LDLDADEEQ--IDFPIVYACARDGIasltqpadgsvpqdstS 196
                 **************************************************999....455444444..4799999999998855555544444444444 PP

                 HHHHHHHHHHH CS
    GTP_EFTU 181 vktllealvel 191
                 +++l++al + 
  KIR60964.1 197 LEPLFRALLDT 207
                 44555555555 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   1.8e-25   8.3e-22       2      84 ..     411     493 ..     410     497 .. 0.96

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 1.8e-25
                 EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HH CS
       EFG_C   2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgd 84 
                 ++EP+++++i++p+ey+g+++++l++r+G++e+  ++++g++++e  +P+++ligf+te+ + T+G+g++++ f++Ye++ g+
  KIR60964.1 411 ICEPVERLTIDAPDEYLGAITQLLATRKGRMEQLVNHGTGWIRMEWLVPARGLIGFRTEFLTDTRGTGILHHVFESYEPWFGE 493
                 89*****************************************************************************9776 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.1   2.3e-14     1e-10       1      74 []     233     303 ..     233     303 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 2.3e-14
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  G++al+rv +Gt+ kG++v  ++ +++ ++   +ris l++ ++ e+ + + a  G+i+a+ g+ + i++G+tl+
   KIR60964.1 233 GRLALCRVRQGTIAKGQTVAWCRtDGSTQR---VRISELLMTEGLERKPADSAGPGDIIAVAGIPE-IMIGETLA 303
                  899******************997777666...*********************************.******95 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   3.3e-10   1.5e-06       2     114 .]      10     137 ..       9     137 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 3.3e-10
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE.......................EEEEECGGCSSHHHHHHHHHHHHHHHHC.T CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke.......................ielvDtpGliegaseekglgkaflalee.a 76 
                 vai+ +   GK+tL+ a+++++   +++  tT  +    ++l++++                       i+++DtpG         ++g ++++    +
  KIR60964.1  10 VAIIAHVDHGKTTLVDAMLRQAGAYGARGETTERVMDS-MDLEREKgitilakntgvrylpadgsepvtINIIDTPG-H------ADFGGEVERGLTmV 100
                 89999999************877777766666666444.664443356677777778888888888888********.2......24555555544437 PP

                 SEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  77 dlillvvdaseeklkpldeeleelleeakkplilvlnk 114
                 d ++l+vdase+   p+ + + +   +a+ p+ilv+nk
  KIR60964.1 101 DGVVLLVDASEG-PLPQTRFVLRKALRARMPIILVINK 137
                 ********9955.6666677777767899********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4487.15
//
Query:       KIR60965.1  [L=171]
Description: MarR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-10   41.3   0.0      2e-10   40.4   0.0    1.4  1  MarR            MarR family
    5.6e-10   39.0   0.6    1.1e-09   38.0   0.6    1.5  1  MarR_2          MarR family
    4.2e-05   24.0   0.1    7.7e-05   23.1   0.1    1.6  1  HTH_27          Winged helix DNA-binding domain
    0.00012   21.6   0.0    0.00017   21.1   0.0    1.3  1  HTH_24          Winged helix-turn-helix DNA-binding
     0.0026   17.9   0.0     0.0044   17.2   0.0    1.3  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
  ------ inclusion threshold ------
      0.022   14.5   0.0      0.042   13.6   0.0    1.6  1  DUF4423         Domain of unknown function (DUF4423)
      0.038   13.9   0.0       0.09   12.7   0.0    1.6  2  TrmB            Sugar-specific transcriptional regulator TrmB
      0.086   13.0   0.0       0.16   12.1   0.0    1.5  1  HTH_34          Winged helix DNA-binding domain
      0.096   12.6   0.0       0.14   12.1   0.0    1.2  1  PAX             'Paired box' domain


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   9.9e-14     2e-10      17      59 .]      60     102 ..      57     102 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 9.9e-14
                 TEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTSE CS
        MarR  17 plsvseLakklgvskstvtrvldrLekkGlieRskspeDrRev 59 
                 p++   L++kl++s+++vt ++drLe++G ++R ++++DrR+v
  KIR60965.1  60 PITPGRLGEKLNLSSGSVTALIDRLERAGHVRRDRDTGDRRKV 102
                 688999***********************************97 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.6   5.5e-13   1.1e-09       1      61 [.      38     100 ..      38     101 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 5.5e-13
                 TT--HHHHHHHHHHHCTTTS..EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
      MarR_2   1 lgltpaqarvLaaLgrrpgr..dltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61 
                 +gl+++++++L a+ +++    ++t+g l ++l+ls ++v+ +++rL++aG+v+r ++ +D+R
  KIR60965.1  38 HGLNGTDLHALIAVMDAELAgaPITPGRLGEKLNLSSGSVTALIDRLERAGHVRRDRDTGDRR 100
                 699999999999999999888788**************************************9 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   3.9e-08   7.7e-05      23      68 .]      65     110 ..      37     110 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.9e-08
      HTH_27  23 dlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                 +l ++ln+++ ++   +++L+++G v r +d  drr +++r  d G
  KIR60965.1  65 RLGEKLNLSSGSVTALIDRLERAGHVRRDRDTGDRRKVFLRYADRG 110
                 7899*************************************88877 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   8.4e-08   0.00017      15      45 ..      58      88 ..      40      91 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 8.4e-08
      HTH_24 15 nprisqreLAerlglSpstvnrrlkrLeeeG 45
                 + i+   L e+l+lS++ v++ ++rLe++G
  KIR60965.1 58 GAPITPGRLGEKLNLSSGSVTALIDRLERAG 88
                5679*************************99 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.2e-06    0.0044      19      55 ..      57      93 ..      48      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.2e-06
                    HHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
  Fe_dep_repress 19 ekkvvktkdlaerLnvspssVsemlkkLekdGyveye 55
                     ++++++ +l e Ln s  sV+  + +Le++G v   
      KIR60965.1 57 AGAPITPGRLGEKLNLSSGSVTALIDRLERAGHVRRD 93
                    678999**************************99765 PP

>> DUF4423  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.1e-05     0.042      23      75 ..      46      96 ..      40     161 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
     DUF4423 23 ypvirel.lplkdfkadpeelakrlrpkisaeevekalefLlklgllkkdedgk 75
                +  i  + ++l  +  +p  l ++l+  +s   v + +++L+++g +++d+d +
  KIR60965.1 46 HALIAVMdAELAGAPITPGRLGEKLN--LSSGSVTALIDRLERAGHVRRDRD-T 96
                44555555677777889*********..**********************99.3 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.5e-05      0.09       4      59 ..      38     100 ..      35     108 .. 0.84
   2 ?   -3.0   0.0       3.5   7.1e+03       5      13 ..     131     139 ..     129     150 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.5e-05
                 CHHHHHCCCHCHHHH....HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST...T CS
        TrmB   4 lGLseyEakvYlaLl....klgpatadeiaeelgvprskvYevLrsLedkGlVerekgr...p 59 
                 +GL+ ++  + +a++    +  p t   + e+l+++  +v   + +Le++G V+r + +   +
  KIR60965.1  38 HGLNGTDLHALIAVMdaelAGAPITPGRLGEKLNLSSGSVTALIDRLERAGHVRRDRDTgdrR 100
                 688888999999998765566788999****************************98775543 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.5
                 HHHHHCCCH CS
        TrmB   5 GLseyEakv 13 
                 G+s+ E +v
  KIR60965.1 131 GFSDDELEV 139
                 899998876 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.1e-05      0.16      16      65 ..      62     110 ..      47     123 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.1e-05
      HTH_34  16 dfvelkealeatdgnLsvhlkkLekagYievdkefkgkkprtllriTpeG 65 
                 ++ +l e+l++++g   + ++ Le ag + +d +  ++ ++  lr  + G
  KIR60965.1  62 TPGRLGEKLNLSSGSVTALIDRLERAGHVRRDRDTGDR-RKVFLRYADRG 110
                 5667889*************************999888.55666655555 PP

>> PAX  'Paired box' domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.1e-05      0.14      13      75 ..      40     102 ..      28     108 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.1e-05
         PAX  13 vngrplpdsirqkivelahsgvrpcvisrqlrvshgcvskilgryqetgsirpgviggskpkv 75 
                 +ng  l   i     ela   + p  +  +l++s g v+ ++ r + +g +r     g + kv
  KIR60965.1  40 LNGTDLHALIAVMDAELAGAPITPGRLGEKLNLSSGSVTALIDRLERAGHVRRDRDTGDRRKV 102
                 689999999999999************************************988877777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 1063.68
//
Query:       KIR60966.1  [L=67]
Description: cold-shock protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-32  109.8   0.4    4.5e-32  109.7   0.4    1.0  1  CSD       'Cold-shock' DNA-binding domain
    0.00012   21.7   0.8    0.00014   21.5   0.8    1.4  1  OB_RNB    Ribonuclease B OB domain
  ------ inclusion threshold ------
      0.011   16.1   0.0      0.012   16.0   0.0    1.1  1  S1        S1 RNA binding domain
      0.076   13.0   0.0       0.12   12.3   0.0    1.4  1  CusF_Ec   Copper binding periplasmic protein CusF


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7   0.4     1e-35   4.5e-32       2      65 ..       3      66 ..       2      67 .] 0.98

  Alignments for each domain:
  == domain 1  score: 109.7 bits;  conditional E-value: 1e-35
                EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEEE CS
         CSD  2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVtk 65
                tGtVkwfn++kgfGFI+++ g+ dvFvH+sai ++g+r+L+egq+VeFev++g+kgp+A nV+ 
  KIR60966.1  3 TGTVKWFNSEKGFGFIEQDGGGPDVFVHYSAIASSGYRELNEGQKVEFEVTQGQKGPQADNVRA 66
                8*************************************************************85 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.8   3.1e-08   0.00014       6      28 ..      11      33 ..       4      63 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.1e-08
                -SSS-EEEEECT.TEEEEE-HHH CS
      OB_RNB  6 hkkGFGFlipdegkeDifippeq 28
                ++kGFGF+++d+g++D+f++ + 
  KIR60966.1 11 SEKGFGFIEQDGGGPDVFVHYSA 33
                68****************98665 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.0   0.0   2.6e-06     0.012      18      64 ..      14      56 ..       2      61 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.6e-06
                TEEEEEET.TTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEE CS
          S1 18 gGafVelg.ngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvd 64
                g  f+e + +g ++fv+ s +++      ++++l +G++v+++v++  
  KIR60966.1 14 GFGFIEQDgGGPDVFVHYSAIASS-----GYRELNEGQKVEFEVTQGQ 56
                444666666899**********98.....***************9865 PP

>> CusF_Ec  Copper binding periplasmic protein CusF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.7e-05      0.12      41      59 ..      40      58 ..      30      65 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.7e-05
                SS-STT-EEEEEEEEETTC CS
     CusF_Ec 41 aglkaGdkVrFefekrdgg 59
                ++l +G+kV+Fe+++ ++g
  KIR60966.1 40 RELNEGQKVEFEVTQGQKG 58
                6899***********9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 508.54
//
Query:       KIR60967.1  [L=257]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-11   44.2   2.6      2e-11   43.8   2.6    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    6.4e-08   32.3   0.3    9.3e-08   31.8   0.3    1.2  1  MTS              Methyltransferase small domain
    9.9e-07   28.7   0.1    1.3e-06   28.3   0.1    1.1  1  Met_10           Met-10+ like-protein
    2.9e-06   27.1   0.0    4.2e-06   26.6   0.0    1.1  1  Methyltransf_16  Lysine methyltransferase
    1.1e-05   26.0   0.3    1.8e-05   25.3   0.3    1.4  1  Methyltransf_25  Methyltransferase domain
    0.00014   21.2   0.1    0.00018   20.8   0.1    1.1  1  TRM              N2,N2-dimethylguanosine tRNA methyltransfera
    0.00082   19.1   0.1     0.0013   18.4   0.1    1.2  1  Cons_hypoth95    Conserved hypothetical protein 95
    0.00083   20.0   0.2     0.0014   19.2   0.2    1.4  1  Methyltransf_11  Methyltransferase domain
     0.0084   15.4   0.2      0.011   15.0   0.2    1.1  1  Methyltransf_2   O-methyltransferase domain
  ------ inclusion threshold ------
      0.021   14.7   0.0      0.026   14.4   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      0.049   13.0   0.0      0.058   12.7   0.0    1.1  1  DNA_methylase    C-5 cytosine-specific DNA methylase
      0.052   13.3   0.0       0.06   13.1   0.0    1.1  1  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   2.6   1.4e-14     2e-11     160     232 ..      90     161 ..      78     165 .. 0.82

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.4e-14
        PrmA 160 kegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellk..eekadviva 232
                  +g++vlD+ +GSG+ aiaaa+ ga++vva DiD+ Av +   Na+ N+v+   +    e+ll+  +  ad++va
  KIR60967.1  90 AAGRRVLDLAAGSGLVAIAAALAGAARVVANDIDPYAVAAVTVNARANRVAVAAM---GEDLLDsdAPDADLLVA 161
                 56899********************************************998663...33333222344777776 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.3   6.2e-11   9.3e-08      19      98 ..      75     156 ..      69     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 6.2e-11
                 HHHHHHHHCHCC....TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-E CS
         MTS  19 GsklLletlpke....lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkf 98 
                 G + L+++l ++    + ++vlDl++G G++++a+a +   a+v++ d+d +A+++ + n++an+++v ++ +d+l+  +  + 
  KIR60967.1  75 GGQALARHLLDHpelaAGRRVLDLAAGSGLVAIAAALAG-AARVVANDIDPYAVAAVTVNARANRVAVAAMGEDLLDSDA-PDA 156
                 66677777766666668899************9988755.559*****************************99998765.444 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   8.7e-10   1.3e-06     100     150 ..      91     140 ..      77     172 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 8.7e-10
                 TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-T CS
      Met_10 100 egevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkve 150
                  g +V+d+ AG G  ai++a  + a rv+a+d++P++v  ++ n + N+v+
  KIR60967.1  91 AGRRVLDLAAGSGLVAIAAAL-AGAARVVANDIDPYAVAAVTVNARANRVA 140
                 6899****************7.77788**********************97 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.8e-09   4.2e-06      22     155 ..      73     190 ..      60     198 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.8e-09
  Methyltransf_16  22 WdaavvlvkylekklakelganelsklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnknalkskvkvevLdWgeeleed 114
                      W  + +l+ +l+       + +  ++++vl+L +G+Glv +a+a++ + a+v+  D++  ++  ++ n  +      ++v+v ++  ge+l  d
       KIR60967.1  73 WAGGQALARHLLD------HPELAAGRRVLDLAAGSGLVAIAAALA-GAARVVANDIDPyAVAAVTVNARA------NRVAVAAM--GEDLL-D 150
                      4444444444444......66778899****************999.99*******998455555555544......56777665..77883.4 PP

  Methyltransf_16 115 llekeevDlilaaDcvYledslelLvkvLkellkkeskvlv 155
                        ++   Dl +a D+ Y+ ++   ++  L++ ++    vlv
       KIR60967.1 151 S-DAPDADLLVAGDVFYDREMAGRMLPFLRRAVARGARVLV 190
                      4.34457***************9999999999988888776 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.3   1.2e-08   1.8e-05       1      73 [.      95     163 ..      95     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.2e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEEST CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssga 73 
                      vLdl++G+G +++a+a + g+a+v++ Di++ +++a+  +a+++++ v  +  d+ d + +d   Dl v+ g 
       KIR60967.1  95 VLDLAAGSGLVAIAAALA-GAARVVANDIDPYAVAAVTVNARANRVAVAAMGEDLLDSDAPD--ADLLVA-GD 163
                      9**************988.69********************999999999999999888887..777777.44 PP

>> TRM  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   1.2e-07   0.00018      46     114 ..      88     160 ..      72     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.2e-07
                 HH-S-EEEEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--......GGEEEE-S-HHHHH CS
         TRM  46 klgekikvldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklneve......eivvineddAnvll 114
                 +l++  +vld  ++sGl ai  al   g+ +v+aNDi + Av+ +  N++ n v+      +++ ++  dA +l+
  KIR60967.1  88 ELAAGRRVLDLAAGSGLVAIAAALA--GAARVVANDIDPYAVAAVTVNARANRVAvaamgeDLLDSDAPDADLLV 160
                 55566689************99987..**************************9988888668888888887766 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   8.5e-07    0.0013      41      88 ..      91     138 ..      81     155 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.5e-07
                    CC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT CS
  Cons_hypoth95  41 egarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelk 88 
                     g rvLDl aGsG +++ A+  ga+++v+ + d+ av+++  n ++ +
     KIR60967.1  91 AGRRVLDLAAGSGLVAIAAALAGAARVVANDIDPYAVAAVTVNARANR 138
                    6789***********************************999987655 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   9.4e-07    0.0014       1      91 [.      96     185 ..      96     190 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 9.4e-07
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld+++G+G++a a a +g arvv+ D+++++++++  +a+ +++ v  + +d+ +   +d   Dl v+  v+   e   + l  ++R +  g
       KIR60967.1  96 LDLAAGSGLVAIAAALAGaARVVANDIDPYAVAAVTVNARANRVAVAAMGEDLLDSDAPD--ADLLVAGDVFYDREMAGRMLPFLRRAVARG 185
                      899************9999***************99999999876444555555555555..899999998887765555555555555554 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   7.6e-06     0.011      51     164 ..      80     190 ..      74     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.6e-06
                     HHHHHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS-----TTEEEEES-TTTS-----SEEEEESSGGGS-HHHH CS
  Methyltransf_2  51 akkvleafdleglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehlsageeervefvgGdffkdslPeaDaillkrvlhDwsdekc 145
                     a+++l + +l   ++++D+  G+G +a a+ ++    +v+  D+   + aA +    +++  v+ +g d+ ++  P+aD+++   v +D   e  
      KIR60967.1  80 ARHLLDHPELAAGRRVLDLAAGSGLVAIAA-ALAGAARVVANDIDPYAVAAVTVNARANRVAVAAMGEDLLDSDAPDADLLVAGDVFYDR--EMA 171
                     567788888999999*********776554.45577899999998888888888677778899999*********************996..567 PP

                     HHHHHHHHHH--TT-EEEE CS
  Methyltransf_2 146 vklLkrvkkalpagGkviv 164
                      ++L  +++a+  g +v+v
      KIR60967.1 172 GRMLPFLRRAVARGARVLV 190
                     8999999999999999998 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.7e-05     0.026      18      62 ..      87     136 ..      68     223 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
  Methyltransf_23  18 pklraggrvLdiGcGtGillevlrengf.svtgvDlspeaveiae....k 62 
                      p+l ag rvLd+++G+G ++  ++  g+  v++ D++p av+ +      
       KIR60967.1  87 PELAAGRRVLDLAAGSGLVAIAAALAGAaRVVANDIDPYAVAAVTvnarA 136
                      4588999********************989********999987653321 PP

>> DNA_methylase  C-5 cytosine-specific DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.9e-05     0.058       2      68 ..      94     162 ..      93     163 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.9e-05
                    EEEEES-TT-HHHHHHHHTT-EEEEEEE--TTTHHHHHHH-.-SEEEES-TTTS-....GS--.-SEEEE- CS
  DNA_methylase   2 kfidLfaGiGGfrlgleaagfecvaaseidkkaaktYeanfkkvsigDitkidkk....klpediDlLvgG 68 
                    +++dL aG G ++++ + ag   v+a++id++a++    n  + +   +    ++    + p d DlLv+G
     KIR60967.1  94 RVLDLAAGSGLVAIAAALAGAARVVANDIDPYAVAAVTVNA-RANRVAVAAMGEDlldsDAP-DADLLVAG 162
                    689*****************************999988888.44444444444444434677.69999998 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     4e-05      0.06       4      54 ..      92     140 ..      89     210 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4e-05
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld 54 
                      g rvlDl++G+G  ++++a +    a+vv  Di++ a+   + na+ + + 
       KIR60967.1  92 GRRVLDLAAGSGLVAIAAA-L-AGAARVVANDIDPYAVAAVTVNARANRVA 140
                      569****************.5.557**************999999987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2081.46
//
Query:       KIR60968.1  [L=207]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-16   58.9   7.7    6.5e-16   58.9   7.7    2.4  3  SNARE_assoc      SNARE associated Golgi protein
  ------ inclusion threshold ------
      0.025   14.4   0.3      0.047   13.5   0.3    1.4  1  DUF443           Protein of unknown function (DUF443)
       0.31   10.9   8.6        2.5    8.0   1.0    3.1  3  LapA_dom         Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1         1   6.1e+03     102     118 ..       5      21 ..       4      23 .. 0.77
   2 !   58.9   7.7   1.1e-19   6.5e-16       1     119 [.      36     159 ..      36     160 .. 0.86
   3 ?    2.2   0.2      0.04   2.4e+02      87     114 ..     163     190 ..     158     194 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1
  SNARE_assoc 102 atfiGsipwalvyaylG 118
                  ++ +G +p++l++ +lG
   KIR60968.1   5 THQVGELPTILLVGVLG 21 
                  67789999999888877 PP

  == domain 2  score: 58.9 bits;  conditional E-value: 1.1e-19
  SNARE_assoc   1 lPsevllvaaGvlfglll...gtlvtslgallGaslayllgrylgr...kalrrkllsekrvkalerlverygflallllrllpivPrdlvnyvaGlt 92 
                  +P++v ++aa+ ++ + +   ++ ++++g+++G sl++l+gr++g+   ++ +  ++ e r  a+e+ ++r g +++l++ +lp++ ++l++++aG +
   KIR60968.1  36 VPGDVAVLAAVGVGRPATaasTVAAVVAGCVAGWSLSFLVGRRYGDrlrHSRVGGWIGESRWAAAESVLRRGGGRMVLVAPFLPVF-NALLPLAAGGL 132
                  5777777666666644444548888999*****************9999555555777777788********************98.*********** PP

  SNARE_assoc  93 rvsfkrFflatfiGsipwalvyaylGs 119
                  r+s++rF++++ +G+++wa +y+ lG 
   KIR60968.1 133 RMSYRRFLACASVGAALWAGLYVALGT 159
                  ************************996 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.04
  SNARE_assoc  87 yvaGltrvsfkrFflatfiGsipwalvy 114
                   +aGl++v + + +++ ++G +++ +v+
   KIR60968.1 163 SLAGLLPVDVSPLLVTMAVGLLLAGVVL 190
                  5799999999999999999998876655 PP

>> DUF443  Protein of unknown function (DUF443)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   7.9e-06     0.047      67     110 ..     149     192 ..     142     195 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.9e-06
      DUF443  67 lalGsavllgnllrklidvfniqlsklvnliillivlllvlvlr 110
                 l +G  v+lg+l r+l+ ++++++s+l++++ + ++l+ v++l+
  KIR60968.1 149 LWAGLYVALGTLSRSLAGLLPVDVSPLLVTMAVGLLLAGVVLLV 192
                 568999*******************************9999886 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2      0.67     4e+03      20      29 ..      14      20 ..       6      26 .. 0.51
   2 ?    6.8   0.1   0.00098       5.8      24      50 ..      58      84 ..      56      87 .. 0.79
   3 ?    8.0   1.0   0.00041       2.5      23      45 ..     175     197 ..     172     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.67
    LapA_dom 20 sllllvafgi 29
                +ll+    ++
  KIR60968.1 14 ILLVG---VL 20
                33332...22 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00098
    LapA_dom 24 lvafgiGallgwllslwsylrlrrelr 50
                ++a+++G ++gw ls++   r+  +lr
  KIR60968.1 58 VAAVVAGCVAGWSLSFLVGRRYGDRLR 84
                6899************87766666555 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00041
    LapA_dom  23 llvafgiGallgwllslwsylrl 45 
                 llv++++G+ll++++ l+++  l
  KIR60968.1 175 LLVTMAVGLLLAGVVLLVTRRGL 197
                 89*************99866554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1491.57
//
Query:       KIR60969.1  [L=217]
Description: Zn-dependent hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-13   49.3   6.8    9.5e-13   48.6   6.8    1.4  1  Lactamase_B    Metallo-beta-lactamase superfamily
  ------ inclusion threshold ------
      0.026   14.0   1.2      0.049   13.2   1.2    1.4  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   6.8   1.1e-16   9.5e-13       2     197 .]      29     196 ..      28     196 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 1.1e-16
                  CCCSSEEEEEE..ETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHH CS
  Lactamase_B   2 gpdpvnsylie..gdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkgll 97 
                  gp   n+yl++  + g+ +LiD+  ++++ +++       +++  + +v+ TH H DH  +l+++v +t++   ++a++a+ l+ ++           
   KIR60969.1  29 GPMDNNAYLLRcrDTGEQLLIDAANEAPRLLEL-------VGDAGLATVVTTHQHMDHWVALEEVVAKTGARALVHADDAAGLPIPAQ---------- 109
                  56678*******999****************86.......****************************************99999999.......... PP

                  TTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEE...TTCCEEEECTTTSSHHCCCCCC..TTCEEE-SHCHHHHHHHHHHHHHHHCHS CS
  Lactamase_B  98 lagvsadkpdvdeeeldgnaggrralyvtggpghghghgvvey...gggkvlftGDallagetgridl.tlrgaevrdpsdaekyldsllklaglkae 191
                             ++ ++d+ a g+r+l+v++  gh++g++ + y    g   lftGD l++g  g +d+ + r+++  d+++++          +l++e
   KIR60969.1 110 -----------PLTDGDTVAVGDRELEVIHLRGHTPGSIALLYrdpAGVPHLFTGDSLFPGGVGNTDRdPQRFGQLVDDVEHRLFD-------RLPDE 189
                  ...........9*****************************994445689******************655555555555555555.......56666 PP

                  EEEE.SS CS
  Lactamase_B 192 vlvp.gH 197
                  + ++ gH
   KIR60969.1 190 TWFYpGH 196
                  5554466 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.2   5.4e-06     0.049       3      73 ..      47     103 ..      45     154 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.4e-06
                    EEES--TTHHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTT CS
  Lactamase_B_2   3 iLiDagpdlrqqalralqPvelrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavlean 73 
                    +LiDa  +  +   r+l   el+ + + ++ V+ th+H+DH   l  + + ++      a + v+a+ +a+
     KIR60969.1  47 LLIDAANE--A--PRLL---ELVGD-AGLATVVTTHQHMDHWVALEEVVAKTG------ARALVHADDAAG 103
                    57777777..2..3443...44445.59**************77777776433......333334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1569.09
//
Query:       KIR60970.1  [L=238]
Description: maleylpyruvate isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-28   98.5  24.1    5.4e-28   98.5  24.1    2.0  2  MDMPI_N   Mycothiol maleylpyruvate isomerase N-terminal domai
    1.1e-07   32.4   3.5    1.6e-07   31.9   3.5    1.2  1  DUF664    Protein of unknown function (DUF664)
    4.5e-06   27.4   8.9    4.5e-06   27.4   8.9    2.9  3  MDMPI_C   MDMPI C-terminal domain
      2e-05   25.1   7.5    2.3e-05   24.9   6.8    1.4  1  DinB_2    DinB superfamily


Domain annotation for each model (and alignments):
>> MDMPI_N  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5  24.1   1.2e-31   5.4e-28       1     141 []      12     148 ..      12     148 .. 0.96
   2 ?   -0.5   0.3       0.4   1.8e+03      72      92 ..     167     187 ..     152     230 .. 0.60

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 1.2e-31
     MDMPI_N   1 lreewaalaalvagLtdeqwaapspcpGWtvadlvaHlarsaralaaalaaegaesalardaaaalvtaadaeavdlaaslapeallaafraavtrlaa 99 
                 l++++a+l +++a+L+d+++aaps++pGWt+a+++ Hlar+a+ + ++l+   a++++  + ++a +taa+a++++ +a+++p+all+++r++++r+a+
  KIR60970.1  12 LDDATARLLRTAAALDDADVAAPSLLPGWTRAHVLTHLARNADGFVNLLTS--ARTGERIP-MYA-STAARAADIATGAARTPAALLDDLRRSAERFAE 106
                 56899********************************************98..89999999.655.89999**************************** PP

     MDMPI_N 100 alaalppdaiadrlgipggprslgeflrtrlvEavvHglDla 141
                 a+aa+p +a+a+++ ++ gp +++  ++ rl+E+ vH++Dla
  KIR60970.1 107 AVAAMPVQAWAATVETRRGPWPAAMLVWGRLREVEVHHVDLA 148
                 **********************999***************97 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.4
     MDMPI_N  72 aeavdlaaslapeallaafra 92 
                 +  + la +++++al+ +f++
  KIR60970.1 167 EVTAGLAGRDDAPALVLRFDG 187
                 334444444444444444444 PP

>> DUF664  Protein of unknown function (DUF664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   3.5   3.5e-11   1.6e-07       2     131 ..       8     145 ..       7     149 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 3.5e-11
                 HHHHHHHHHHHHHHHHTT--GGGTT--BTTB-S-HHHHHHHHHHHHHHHHHHHTT-S---TTTSHH..TTTSSS---SS---HHHHHHHHHHHHHHHHH CS
      DUF664   2 LeafLdrqretllakleGLsdeqarrravpsstsllgLvkHvaevErgwfrrvlggeeevpldrsa..adpdadfelaedetladllaeyrravarada 98 
                 L + Ld++ ++ll++ + L+d++++++++ ++++ + ++ H+a+   g+++  + ++  +++++ a  a + ad++    +t+a ll++ rr ++r  +
  KIR60970.1   8 LTGDLDDATARLLRTAAALDDADVAAPSLLPGWTRAHVLTHLARNADGFVNLLTSARTGERIPMYAstAARAADIATGAARTPAALLDDLRRSAERFAE 106
                 5667999*********************************************9999966666555555999**************************** PP

                 HHTT--HHHHTSB-T-.............SBHHHHHHHHH CS
      DUF664  99 vvaaeldldetvrvpk...apwgee....vslrwvlvhli 131
                 +va ++++++ +++++    pw +       lr v vh++
  KIR60970.1 107 AVA-AMPVQAWAATVEtrrGPWPAAmlvwGRLREVEVHHV 145
                 ***.888888777755222333333666556677766666 PP

>> MDMPI_C  MDMPI C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   8.3         4   1.8e+04      54      87 ..      88     138 ..      12     141 .. 0.61
   2 ?    2.1   3.5     0.081   3.6e+02       2      52 ..     108     157 ..      94     159 .. 0.84
   3 !   27.4   8.9     1e-09   4.5e-06       1      87 [.     155     232 ..     155     236 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 4
     MDMPI_C  54 g................adatvrGtaadlllll.wGRlspddtlevdGdra 87 
                 +                a a+  ++  ++++ + ++R+++++++ v+G+++
  KIR60970.1  88 RtpaallddlrrsaerfAEAVAAMPVQAWAATVeTRRGPWPAAMLVWGRLR 138
                 133333333344444455555555555555544366666666666666555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.081
     MDMPI_C   2 laadgvdellatvvarraaapdsrvvlelegprtvhlhatdggra.rlalwa 52 
                 +aa  v  + atv +rr+++p  +++l+  + r v +h  d + + ++a+w+
  KIR60970.1 108 VAAMPVQAWAATVETRRGPWP--AAMLVWGRLREVEVHHVDLAAGyTPADWP 157
                 566667889999999999999..99999999999999999877778888887 PP

  == domain 3  score: 27.4 bits;  conditional E-value: 1e-09
     MDMPI_C   1 elaadgvdellatvvarraaapd.srvvlelegprtvhlhatdggrarlalwadgadatvrGtaadlllllwGRlspddt.levdGdra 87 
                 +++  +  +ll +v+a  a+++d +++vl+ +g  +  + ++ +g             tv+G+a  l+++l+GR+ +d+  ++ dG+++
  KIR60970.1 155 DWPEAFAQRLLHEVTAGLAGRDDaPALVLRFDGSSHEVVVGDPDGA-----------PTVTGPAHGLAAWLTGRGGADTLaVTPDGPLP 232
                 79999****************99*************9999999883...........9*******************996666666665 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   6.8   5.1e-09   2.3e-05       2     109 ..      12     128 ..      11     146 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 5.1e-09
      DinB_2   2 lerararllalledlteeelnrqpspgkwsiawllaHlgnveelllerlr....geeap........rpgldpltppsaaealaylaevrarllallea 88 
                 l+ a arll  +++l++++  ++   ++w+ a++l Hl+   +++++ l     ge++p         +    ++  ++a +l+ l+++ +r+ + ++a
  KIR60970.1  12 LDDATARLLRTAAALDDADVAAPSLLPGWTRAHVLTHLARNADGFVNLLTsartGERIPmyastaarAADIATGAARTPAALLDDLRRSAERFAEAVAA 110
                 8999******************************************9999999987777555544323444444559********************** PP

      DinB_2  89 ltdadldrpltaphpglgklt 109
                 ++ +++++++ +    +g+++
  KIR60970.1 111 MPVQAWAATVETR---RGPWP 128
                 *********9998...44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1764.78
//
Query:       KIR60971.1  [L=350]
Description: GTP-binding protein EngC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-40  138.8   0.0      2e-40  138.4   0.0    1.1  1  RsgA_GTPase  RsgA GTPase
      2e-06   28.4   0.0      3e-06   27.8   0.0    1.3  1  ABC_tran     ABC transporter
    2.2e-05   24.5   0.0    3.6e-05   23.8   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
    0.00043   20.0   0.0     0.0009   18.9   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain
    0.00054   20.4   0.5     0.0019   18.6   0.1    2.0  2  AAA_16       AAA ATPase domain
     0.0015   18.6   0.2     0.0048   17.0   0.0    1.9  2  Dynamin_N    Dynamin family
     0.0052   16.3   0.0        1.5    8.3   0.0    2.2  2  FeoB_N       Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.042   13.6   0.0      0.075   12.8   0.0    1.3  1  IstB_IS21    IstB-like ATP binding protein
      0.095   13.2   0.0       0.14   12.7   0.0    1.1  1  AAA_23       AAA domain
       0.14   11.0   0.0        0.2   10.5   0.0    1.1  1  AAA_PrkA     PrkA AAA domain
       0.27   10.4   0.1       0.44    9.7   0.1    1.2  1  DUF815       Protein of unknown function (DUF815)


Domain annotation for each model (and alignments):
>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.4   0.0   1.2e-43     2e-40       1     166 [.      87     261 ..      87     262 .. 0.96

  Alignments for each domain:
  == domain 1  score: 138.4 bits;  conditional E-value: 1.2e-43
                  E---S-EETTTT..........EES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHT CS
  RsgA_GTPase   1 vleRknelvrpk..........vaNvdqllivvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktke 88 
                  vl+R+++lvr++          +aN+d + +v  ++ pe ++ +++r+L la+e+g++p++vl+K+Dl+ +   + + + +  a g++vl vsa++++
   KIR60971.1  87 VLPRRTALVRRTagkdasgqvlAANLDAAAVVEPVH-PEPDVARIERLLSLAHESGATPLVVLTKADLAADPA-AIARQLAGVAPGVPVLPVSAERGD 182
                  689********99***********************.************************************.555555666789************ PP

                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEESS-SSSS--G CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglliDtPGfreldl 166
                  gl++l+++++  +t +l+G+SG+GKS+L+nal++   + t+++++ +g+G+hTTt + l++++ gg++ DtPG+r+++l
   KIR60971.1 183 GLDALRPHVAPgRTLALLGPSGAGKSSLVNALAGAVVMPTQAIRRVDGKGRHTTTWRALVPVPGGGAVLDTPGVRAVGL 261
                  *********998***************************************************************9886 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.9e-09     3e-06       4      36 ..     187     219 ..     184     241 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.9e-09
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllk 36 
                 +  ++ +g+++a++G++GaGKS+L+++lag + 
  KIR60971.1 187 LRPHVAPGRTLALLGPSGAGKSSLVNALAGAVV 219
                 566799***********************9865 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   2.2e-08   3.6e-05       2      72 ..     197     274 ..     196     295 .. 0.66

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2.2e-08
                 EEEEESTTSSHHHHHHHHHTS....TEEESSSTTSSSSEEEEEEE...ETTEEEEEEECGGCSS..HHHHHH.HHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge....kaivsdkpgtTrdinegrvk...lkgkeielvDtpGlie..gaseek.glgkafla 72 
                  a++G + +GKS+L+nal g+    +  + +  g+ r++++ r            ++DtpG +   g  ++  gl +af++
  KIR60971.1 197 LALLGPSGAGKSSLVNALAGAvvmpTQAIRRVDGKGRHTTTWRALvpvP--GGGAVLDTPG-VRavGLLDGAaGLDRAFAD 274
                 689*****************75444345556666666664444331212..34699*****.4322222344467777665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   5.5e-07    0.0009      22      50 ..     194     223 ..     184     227 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 5.5e-07
      AAA_29  22 kgatlltGpsGsGKSTllDAiq.alLvpak 50 
                   +  l GpsG+GKS+l+ A++ a+ +p++
  KIR60971.1 194 GRTLALLGPSGAGKSSLVNALAgAVVMPTQ 223
                 347889**************9846666666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.99   1.6e+03     117     140 ..     124     147 ..      28     169 .. 0.67
   2 !   18.6   0.1   1.2e-06    0.0019      14      46 ..     185     216 ..     178     253 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.99
      AAA_16 117 srllellkrllallsrderplvlv 140
                 +   + + rll+l+++ + + ++v
  KIR60971.1 124 EPDVARIERLLSLAHESGATPLVV 147
                 344444444454444444433333 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.2e-06
      AAA_16  14 salervrsgrpelvllsGesGvGKsslvrellr 46 
                 +al++  +++ + + l G+sG GKsslv++l+ 
  KIR60971.1 185 DALRPHVAPG-RTLALLGPSGAGKSSLVNALAG 216
                 6788777776.89****************9984 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.9e-06    0.0048       2      28 ..     198     224 ..     197     227 .. 0.91
   2 ?   -1.8   0.0       1.8   2.9e+03     102     113 ..     247     258 ..     232     260 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.9e-06
                 EEEEBTTTTHHHHHHHHHTS--S---S CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgp 28 
                 a++G   +GKSS++naL g+ ++p+++
  KIR60971.1 198 ALLGPSGAGKSSLVNALAGAVVMPTQA 224
                 78999******************9975 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.8
                 SEEEEE---B-S CS
   Dynamin_N 102 gltlvDlPGlds 113
                 g  ++D+PG+  
  KIR60971.1 247 GGAVLDTPGVRA 258
                 55689****976 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0046       7.6      89     154 ..     128     189 ..     111     191 .. 0.80
   2 !    8.3   0.0   0.00095       1.5       2      23 ..     196     217 ..     195     246 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0046
                 GGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH CS
      FeoB_N  89 tnlernLyLtlqllelgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieellk 154
                 +++er L L     e g+  +++l + d a +    i  +    + gvpv+++sa++++g+++l+ 
  KIR60971.1 128 ARIERLLSLA---HESGATPLVVLTKADLAAD-PAAIARQLAGVAPGVPVLPVSAERGDGLDALRP 189
                 5566666654...5778888999999998865.4678888888889****************9975 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00095
                 EEEEEESTTSSHHHHHHHHHTT CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltga 23 
                 t+al+G   +Gk++l+nal+ga
  KIR60971.1 196 TLALLGPSGAGKSSLVNALAGA 217
                 689*****************97 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.6e-05     0.075      47      73 ..     194     220 ..     185     229 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.6e-05
   IstB_IS21  47 kenivllGpsGvGKshlaialgveavr 73 
                    ++llGpsG+GKs l  al+ + v 
  KIR60971.1 194 GRTLALLGPSGAGKSSLVNALAGAVVM 220
                 56799****************988775 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.4e-05      0.14      24      48 ..     199     223 ..     194     239 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.4e-05
      AAA_23  24 ItGpNGaGKTTildAiklaLygetp 48 
                 + Gp GaGK+++++A+  a    t+
  KIR60971.1 199 LLGPSGAGKSSLVNALAGAVVMPTQ 223
                 78**************988765555 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00012       0.2      89     110 ..     195     216 ..     191     234 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
    AAA_PrkA  89 qilyllGPvggGksslverlkk 110
                 + l llGP g+Gksslv++l  
  KIR60971.1 195 RTLALLGPSGAGKSSLVNALAG 216
                 5689**************9965 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00027      0.44      55      78 ..     196     219 ..     190     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00027
      DUF815  55 nvLLwGarGtGKSslvkallneya 78 
                  + L G  G+GKSslv al  ++ 
  KIR60971.1 196 TLALLGPSGAGKSSLVNALAGAVV 219
                 56699*************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2412.05
//
Query:       KIR60972.1  [L=981]
Description: excinuclease ABC subunit A [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-38  130.0   0.0    7.7e-38  128.9   0.0    1.6  1  UvrA_inter       UvrA interaction domain
    1.4e-36  125.2   0.0    1.6e-34  118.6   0.0    3.2  3  UvrA_DNA-bind    UvrA DNA-binding domain
    2.5e-20   73.4   0.0    5.5e-11   43.1   0.0    4.2  3  ABC_tran         ABC transporter
    5.7e-09   36.6   0.2     0.0018   18.7   0.1    3.0  2  AAA_16           AAA ATPase domain
    1.7e-07   30.9   0.0     0.0027   17.4   0.0    2.4  2  AAA_29           P-loop containing region of AAA domain
    8.3e-07   29.1   0.1     0.0034   17.3   0.1    2.6  2  RsgA_GTPase      RsgA GTPase
      1e-06   28.4   0.0        2.1    7.7   0.0    4.1  4  SMC_N            RecF/RecN/SMC N terminal domain
    8.8e-06   25.7   0.5       0.29   10.9   0.0    4.0  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    1.5e-05   25.6   0.0       0.26   11.8   0.0    2.3  2  AAA_23           AAA domain
    1.6e-05   24.5   0.0      0.066   12.8   0.0    2.6  2  AAA_25           AAA domain
    5.2e-05   23.4   0.0       0.93    9.6   0.0    3.5  3  AAA_33           AAA domain
    0.00014   21.8   0.1       0.52   10.2   0.0    2.5  2  APS_kinase       Adenylylsulphate kinase
    0.00037   20.8   0.0       0.13   12.5   0.0    3.0  2  AAA_22           AAA domain
    0.00079   20.0   0.0       0.53   10.8   0.0    2.5  2  AAA_18           AAA domain
     0.0012   18.7   0.1      0.078   12.9   0.0    2.8  3  NACHT            NACHT domain
     0.0063   15.6   0.0       0.25   10.4   0.0    2.5  2  T2SSE            Type II/IV secretion system protein
  ------ inclusion threshold ------
      0.011   15.8   0.2       0.39   10.8   0.1    2.6  2  MMR_HSR1         50S ribosome-binding GTPase
      0.015   14.9   0.2       0.43   10.1   0.1    2.4  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.021   14.0   0.0       0.81    8.8   0.1    2.8  3  NB-ARC           NB-ARC domain
      0.024   14.4   0.2       0.16   11.7   0.1    2.3  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.037   14.4   0.0        1.8    9.0   0.0    2.3  2  RNA_helicase     RNA helicase
       0.04   13.4   0.0      0.088   12.3   0.0    1.5  1  DUF3667          Protein of unknown function (DUF3667)
      0.045   14.1   6.6       0.18   12.2   0.2    3.4  3  DnaJ_CXXCXGXG    DnaJ central domain
      0.045   12.7   0.0       0.39    9.6   0.0    2.1  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.047   13.4   1.2       0.69    9.6   0.0    2.4  2  PRK              Phosphoribulokinase / Uridine kinase family
      0.054   12.7   0.1        1.1    8.5   0.1    2.1  2  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.064   12.6   0.0          1    8.7   0.0    2.2  2  ATPase           KaiC
      0.071   13.4   0.0        5.5    7.2   0.0    2.5  2  AAA_28           AAA domain
      0.074   13.0   0.3       0.27   11.1   0.0    2.0  2  NTPase_1         NTPase
      0.088   12.8   0.0        2.8    8.0   0.0    2.7  2  AAA_14           AAA domain
       0.22   11.2   0.0        2.6    7.7   0.0    2.3  2  AAA_24           AAA domain
       0.27   10.1   1.2       0.42    9.5   0.1    1.7  2  DUF463           YcjX-like family, DUF463
       0.81    9.9   6.8         16    5.7   0.0    4.1  4  Zn-ribbon_8      Zinc ribbon domain
        2.1    8.4   4.6       0.41   10.7   0.1    2.1  1  DUF87            Helicase HerA, central domain
        2.9    7.9   4.3       0.66   10.0   0.1    2.0  2  Dynamin_N        Dynamin family
        3.7    7.6   6.9         14    5.7   0.6    3.7  3  Anti-TRAP        Tryptophan RNA-binding attenuator protein in


Domain annotation for each model (and alignments):
>> UvrA_inter  UvrA interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   0.0   1.6e-40   7.7e-38       1     108 [.     131     238 ..     131     239 .. 0.98

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 1.6e-40
  UvrA_inter   1 QsveqIvdqilkleegtkllilaPvvrerkgefkkllenlkkkGfvrvriDgeiydldedieldknkkhsievvvDrlvvkkeersrlaesvetAlklg 99 
                 Qs++qIvd++l++ egt++++laPvvr+rkge+ +l+ +l+ kG+ r r+Dg ++ l+e ++l+k++kh+ievv+Drl+vk + ++rl++sve Al l+
  KIR60972.1 131 QSPQQIVDRVLAMAEGTRFMVLAPVVRGRKGEYVDLFAELQGKGYARARVDGVVHPLTEPPKLKKQEKHTIEVVIDRLTVKPSAKQRLTDSVEAALGLS 229
                 9************************************************************************************************** PP

  UvrA_inter 100 eglvivsev 108
                  glv+ ++v
  KIR60972.1 230 GGLVLLDFV 238
                 ****98765 PP

>> UvrA_DNA-bind  UvrA DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.55   2.8e+02      79     108 ..      37      66 ..      27      68 .. 0.85
   2 !  118.6   0.0   3.1e-37   1.6e-34       1     109 [.     295     404 ..     295     405 .. 0.97
   3 ?   -0.2   0.0       2.5   1.2e+03      75     105 ..     699     729 ..     686     731 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.55
                    ......---HHHHHHHHHH-------HHHH CS
  UvrA_DNA-bind  79 rsyektfeGvipnlerryreteSeavreel 108
                     + +  f+ +  + +rry e+ S ++r+ l
     KIR60972.1  37 GKSSLAFDTIFAEGQRRYVESLSSYARQFL 66 
                    5667789999999**************966 PP

  == domain 2  score: 118.6 bits;  conditional E-value: 3.1e-37
                    -S----.-----------GGG...TT-HHHHHHHHHHHTTTS------------S-THHHHH----...................---HHHHHHHH CS
  UvrA_DNA-bind   1 DpdlvvpdpslslaegAiapw.sskkssyyrqlleavaehygidldtpfkeLpeeqkdilLyGsgeekikveyksggrkrsyektfeGvipnlerr 95 
                    Dp+lvvpdp+++l+egAi+pw s ++ +y+ +llea+ e  ++d+dtp++ Lp+++++++L+Gsg+++ +++++++gr+rsy++ feGv++++err
     KIR60972.1 295 DPELVVPDPERTLREGAIQPWsSGHNLEYFLRLLEALGEAEHFDVDTPWRALPARAQKTILHGSGDQVHVRYRNKFGRERSYYTGFEGVVQWIERR 390
                    9********************88888899*************************************999999999********************* PP

                    HH-------HHHHH CS
  UvrA_DNA-bind  96 yreteSeavreele 109
                    + +teSe+ re++e
     KIR60972.1 391 HTDTESEWSREKYE 404
                    ************98 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 2.5
                    ..........---HHHHHHHHHH-------H CS
  UvrA_DNA-bind  75 ggrkrsyektfeGvipnlerryreteSeavr 105
                    g++ rs  +t+ Gv  ++++ + et+  +vr
     KIR60972.1 699 GRTPRSNPATYTGVWDHVRKLFAETTEAKVR 729
                    5667788899****************99998 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   9.4e-05     0.047       1      28 [.      15      42 ..      15      52 .. 0.93
   2 !   10.4   0.0    0.0015      0.72      94     135 ..     478     521 ..     383     523 .. 0.77
   3 !   43.1   0.0   1.1e-13   5.5e-11       1     136 [.     629     865 ..     629     866 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.4e-05
                EEEEEEEEETTSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  1 lknvslklkegekvaivGenGaGKStLl 28
                l++vsl+l ++ +++++G +G+GKS+L+
  KIR60972.1 15 LRDVSLDLPRDALIVFTGLSGSGKSSLA 42
                689***********************95 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0015
                 TGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHT..SSEEEEEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
    ABC_tran  94 lkelkdtvvksspssLSgGqkqrvalarallkk..pkllllDEp 135
                 +++l+   +++ + +LSgG+ qr+ la  + +     l++lDEp
  KIR60972.1 478 DVGLDYLSLDRPAGTLSGGEAQRIRLATQIGSGlvGVLYVLDEP 521
                 3335555566667**************99877622468888988 PP

  == domain 3  score: 43.1 bits;  conditional E-value: 1.1e-13
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................. 79 
                 l+n+++++  g+++a++G +G+GKStL++ +++ +     +G  ++ g++++   le+++k +gv +      p++    n                  
  KIR60972.1 629 LRNLTVSFPLGQLIAVTGVSGSGKSTLVNDILHAVLAnqINGARHVPGRHTRVSGLEHVDKVVGVDQSPIGRTPRS----Npatytgvwdhvrklfaet 723
                 689**************************99887654337777766666666655555555555543333333333....2222344555566666666 PP

                 ...........................................................................HHHTC.......HHHHHHHSTTGG CS
                 ...........................................................................xxxxx.......xxxxxxxxxxxx RF
    ABC_tran  80 ...........................................................................esdee.......iekalsklglke 96 
                                                                                            e+ +e       i++ l++l +++
  KIR60972.1 724 teakvrgygpgrfsfnvkggrceacsgdgtikiemnflpdvyvpcevckgarynretlevhykgktvsdvlempiEEAAEffsaipaIHRHLKTLVDVG 822
                 666679*********************************************999999999988888888777776444447788888999999999999 PP

                 TTCBGESTTSGGS-HHHHHHHHHHHHHHHT...SSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF
    ABC_tran  97 lkdtvvksspssLSgGqkqrvalarallkk...pkllllDEpt 136
                 l   ++++ + +LSgG+ qrv+la  l k+   +++++lDEpt
  KIR60972.1 823 LGYVRLGQPAPTLSGGEAQRVKLASELQKRstgRTVYVLDEPT 865
                 ******9999****************987622268*******9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     6e-05      0.03      24      83 ..      23      87 ..       5     242 .. 0.80
   2 !   18.7   0.1   3.7e-06    0.0018      25      52 ..     640     670 ..     614     691 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6e-05
      AAA_16 24 p..elvllsGesGvGKsslv.rellralekdggif..lrgkcdql..esaipysalaqalareellr 83
                p   l++++G sG+GKssl+ ++++ + ++   ++  l+  ++q+  +++ p + +++ l+    + 
  KIR60972.1 23 PrdALIVFTGLSGSGKSSLAfDTIFAEGQR--RYVesLSSYARQFlgQMDKPDVDFIEGLSPAVSID 87
                4446899*************9999964444..46666999999999999999777888885533333 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 3.7e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekd...g 52 
                 +l+ ++G sG+GKs+lv+ +l+a+ ++   g
  KIR60972.1 640 QLIAVTGVSGSGKSTLVNDILHAVLANqinG 670
                 799******************9988875543 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00064      0.32      16      38 ..      19      41 ..      11      52 .. 0.76
   2 !   17.4   0.0   5.4e-06    0.0027      14      49 ..     631     666 ..     624     672 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00064
      AAA_29 16 tieidlkgatlltGpsGsGKSTl 38
                ++++ ++  +++tG sGsGKS+l
  KIR60972.1 19 SLDLPRDALIVFTGLSGSGKSSL 41
                55565445889**********98 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 5.4e-06
      AAA_29  14 ghtieidlkgatlltGpsGsGKSTllDAiqalLvpa 49 
                 + t+++ l + + +tG sGsGKSTl+  i    +++
  KIR60972.1 631 NLTVSFPLGQLIAVTGVSGSGKSTLVNDILHAVLAN 666
                 5567777667899************96555544444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0029       1.4      88     116 ..      13      42 ..       3      61 .. 0.77
   2 !   17.3   0.1   6.8e-06    0.0034      87     140 ..     626     679 ..     612     692 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0029
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHH CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLi 116
                  ++l++++  l    ++v+ G SG GKS+L 
   KIR60972.1  13 HNLRDVSLDLPRdALIVFTGLSGSGKSSLA 42 
                  5566666666544999************95 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 6.8e-06
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S------------ CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevseklgrGkhT 140
                  +++l++l+  +   +++++ G SG GKStL+n +l    l+ +   +++  G+hT
   KIR60972.1 626 EHNLRNLTVSFPLgQLIAVTGVSGSGKSTLVNDILHA-VLANQINGARHVPGRHT 679
                  55666666666544999****************9987.33333333455689998 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0      0.04        20       5      51 ..       5      52 ..       1      72 [. 0.71
   2 ?    5.5   0.0     0.021        10     135     211 ..     395     566 ..      85     572 .. 0.69
   3 !    7.7   0.0    0.0043       2.1      17      47 ..     633     662 ..     617     687 .. 0.76
   4 ?    5.9   0.0     0.015       7.5     136     211 ..     834     909 ..     692     916 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.04
                EEEESETTEECEEEEEETTSS.EEEEEESTTSSHHHH.HHHHHHHCTT. CS
                xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx.xxxxxxxxxxx RF
       SMC_N  5 leienFksyagktvilpfsks.ftaivGpNGSGKsnl.ldAilFvLGer 51
                l+i++ +  + + v+l++ +  + + +G  GSGKs+l +d i F  G+r
  KIR60972.1  5 LIIRGAREHNLRDVSLDLPRDaLIVFTGLSGSGKSSLaFDTI-FAEGQR 52
                666666666666666666544156679*********945777.776655 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.021
                 T................................................................................................CS CS
                 x................................................................................................xx RF
       SMC_N 135 e................................................................................................lL 137
                 e                                                                                                +L
  KIR60972.1 395 EsewsrekyegymrdvpcaacggarlkpevlavtlagksiaevcnlsvgecaellagieltdrqkmiaervlkeinarlrflldvgldylsldrpagTL 493
                 055555555555555555555555555555555555555555555555555555555555566666666666666777777777777777777777789 PP

                 -HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH.HHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 138 SgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk.eksknaQfivislreemlekadklvgv 211
                 SgGe + + la    i +     ly+lDe    L ++  +++ e l   +     +iv+ ++e++++ ad +v +
  KIR60972.1 494 SGGEAQRIRLATQ--IGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVrLRGLGNTLIVVEHDEDTIRTADWIVDI 566
                 9999887666665..55555678***********9987777776665155566999************9988876 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0043
                 EEEEETTSSEEEEEESTTSSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  17 tvilpfsksftaivGpNGSGKsnlldAilFv 47 
                 tv+ p+  ++ a++G  GSGKs l++ il+ 
  KIR60972.1 633 TVSFPLG-QLIAVTGVSGSGKSTLVNDILHA 662
                 3444444.4889*************999874 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.015
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgv 211
                 +LSgGe + v la  +  ++   + +y+lDe    L ++ ++k+  +l+   ++   +i i ++ ++++ ad l+ +
  KIR60972.1 834 TLSGGEAQRVKLASELQ-KRSTGRTVYVLDEPTTGLHFEDIRKLLMVLEGLVDKgNTVITIEHNLDVIKTADWLIDM 909
                 79****99999998864.45567899***********************8776648899999999999999988766 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.62   3.1e+02       2      15 ..      28      41 ..      27      77 .. 0.91
   2 ?    5.6   0.1     0.024        12     232     287 ..     488     542 ..     458     556 .. 0.77
   3 ?    2.8   0.0      0.17        86       2      19 ..     642     659 ..     641     689 .. 0.78
   4 !   10.9   0.0   0.00058      0.29     237     282 ..     835     880 ..     827     900 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.62
      AAA_21  2 nvliGpNgsGKSnL 15
                 v++G  gsGKS+L
  KIR60972.1 28 IVFTGLSGSGKSSL 41
                7999********98 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.024
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr 287
                 +pa  lS G  + ++l+t + + l    l+++DEp  gLH +  +rl+e l +l+ 
  KIR60972.1 488 RPAGTLSGGEAQRIRLATQIGSGLVG-VLYVLDEPSIGLHQRDNHRLIETLVRLRG 542
                 67888899998888999999999998.9*************666666666555555 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.17
      AAA_21   2 nvliGpNgsGKSnLLdal 19 
                  +++G  gsGKS+L   +
  KIR60972.1 642 IAVTGVSGSGKSTLVNDI 659
                 6899**********8777 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 0.00058
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell 282
                 lS G  +  +l++ l  +   ++++++DEp +gLH + +r+ll +l
  KIR60972.1 835 LSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDIRKLLMVL 880
                 5555555557888888888888**************8888887444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00061       0.3       1      35 [.       4      41 ..       4      46 .. 0.93
   2 !   11.8   0.0   0.00051      0.26       3      49 ..     620     670 ..     618     712 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00061
      AAA_23  1 kLkienfrsf..rdqeidF.skgltlItGpNGaGKTTi 35
                +L i++ r +  rd+++d+  + l ++tG  G+GK+++
  KIR60972.1  4 RLIIRGAREHnlRDVSLDLpRDALIVFTGLSGSGKSSL 41
                6899999999999******999**************98 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00051
      AAA_23   3 kienfrsf..rdqeidF.skgltlItGpNGaGKTTil.dAiklaLygetpr 49 
                  +++ r +  r+ ++ F    l ++tG  G+GK+T++ d ++ +L ++ ++
  KIR60972.1 620 VVHGAREHnlRNLTVSFpLGQLIAVTGVSGSGKSTLVnDILHAVLANQING 670
                 566667777799999998779***************966666666666655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0021         1      30      53 ..      22      45 ..       9      50 .. 0.86
   2 !   12.8   0.0   0.00013     0.066      29      65 ..     636     670 ..     613     685 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0021
      AAA_25 30 lpagelallaGapgtGKttlaldl 53
                lp+++l++++G +g+GK+ la d 
  KIR60972.1 22 LPRDALIVFTGLSGSGKSSLAFDT 45
                69*******************986 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00013
      AAA_25  29 llpagelallaGapgtGKttlaldlalavatGkpwlg 65 
                 + p+g l++++G +g+GK+tl+ d+ +av+  +   g
  KIR60972.1 636 F-PLGQLIAVTGVSGSGKSTLVNDILHAVLANQ-ING 670
                 4.99************************99543.555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0     0.004         2       1      16 [.      27      42 ..      27      75 .. 0.89
   2 ?    0.3   0.0       1.4   7.1e+02      77     118 ..     313     353 ..     311     370 .. 0.85
   3 !    9.6   0.0    0.0019      0.93       1      20 [.     641     660 ..     641     719 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.004
      AAA_33  1 lvllvGlpGsGKstla 16
                l+++ Gl+GsGKs la
  KIR60972.1 27 LIVFTGLSGSGKSSLA 42
                799**********998 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.4
      AAA_33  77 atnlsrrerarflklarrlgvpvrivvvetdeetlkeRlakR 118
                 +++ s ++ + fl+l++ lg + +  +v+t+++ l +R +k 
  KIR60972.1 313 QPWSSGHNLEYFLRLLEALG-EAEHFDVDTPWRALPARAQKT 353
                 67777899999*********.99**********999999886 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0019
      AAA_33   1 lvllvGlpGsGKstlaerll 20 
                 l+ + G++GsGKstl+  +l
  KIR60972.1 641 LIAVTGVSGSGKSTLVNDIL 660
                 67899**********98765 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0     0.001      0.52       3      20 ..      26      43 ..      24      56 .. 0.85
   2 !    8.9   0.0    0.0025       1.3       3      29 ..     640     666 ..     638     685 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.001
                EEEEEESSTTSSHHHHHH CS
  APS_kinase  3 vvvwltGlsgsGKstian 20
                + + +tGlsgsGKs++a+
  KIR60972.1 26 ALIVFTGLSGSGKSSLAF 43
                6799************97 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0025
                 EEEEEESSTTSSHHHHHHHHHHHHHHT CS
  APS_kinase   3 vvvwltGlsgsGKstianalekkLvek 29 
                   + +tG+sgsGKst+ n + +++ ++
  KIR60972.1 640 QLIAVTGVSGSGKSTLVNDILHAVLAN 666
                 57889**********998776555444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.069        35       6      22 ..      26      42 ..      23      66 .. 0.91
   2 !   12.5   0.0   0.00026      0.13       6      29 ..     640     663 ..     638     716 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.069
      AAA_22  6 gilvvtGesGtGKTtll 22
                 ++v tG sG+GK+ l+
  KIR60972.1 26 ALIVFTGLSGSGKSSLA 42
                57999*********986 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00026
      AAA_22   6 gilvvtGesGtGKTtllrrlleql 29 
                 ++++vtG sG+GK+tl++ +l+  
  KIR60972.1 640 QLIAVTGVSGSGKSTLVNDILHAV 663
                 689***************999876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.024        12       1      15 [.      28      42 ..      28      64 .. 0.91
   2 !   10.8   0.0    0.0011      0.53       1      18 [.     642     659 ..     642     695 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.024
      AAA_18  1 IlltGtpGvGKttla 15
                I+ tG +G+GK++la
  KIR60972.1 28 IVFTGLSGSGKSSLA 42
                899**********98 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0011
      AAA_18   1 IlltGtpGvGKttlakeL 18 
                 I++tG++G+GK+tl + +
  KIR60972.1 642 IAVTGVSGSGKSTLVNDI 659
                 89***********98765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.25   1.3e+02       2      18 ..      27      43 ..      26      61 .. 0.83
   2 ?   -2.4   0.0       7.8   3.9e+03      66      99 ..     458     490 ..     445     509 .. 0.72
   3 !   12.9   0.0   0.00016     0.078       2      31 ..     641     670 ..     640     675 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.25
                CEEEEC-TTTCHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlq 18
                l++ +G +GsGK+ L+ 
  KIR60972.1 27 LIVFTGLSGSGKSSLAF 43
                68999*********985 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 7.8
                 -SSS-CCHHHHCCSCCCEEEEEE.-STT-SS-TCH CS
       NACHT  66 aapvsevwavllelperlLlilD.glDelvtdlgq 99 
                 ++ + e   vl e+  rl ++lD glD+l+ d ++
  KIR60972.1 458 QKMIAE--RVLKEINARLRFLLDvGLDYLSLDRPA 490
                 445555..67778888888****999999876665 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 0.00016
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpq 31 
                 l++++G +GsGK+tL+  + +a  +++ ++
  KIR60972.1 641 LIAVTGVSGSGKSTLVNDILHAVLANQING 670
                 789*****************9988888776 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.15        76     123     146 ..      21      42 ..       2      53 .. 0.73
   2 !   10.4   0.0   0.00049      0.25     130     155 ..     640     665 ..     616     670 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.15
       T2SSE 123 rkavrerglilvsGgTgsGKttll 146
                   +  +  li+++G  gsGK+ l+
  KIR60972.1  21 DLP--RDALIVFTGLSGSGKSSLA 42 
                 444..7789***********9876 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00049
       T2SSE 130 glilvsGgTgsGKttllyallkeink 155
                 +li v+G  gsGK+tl++ +l+ + +
  KIR60972.1 640 QLIAVTGVSGSGKSTLVNDILHAVLA 665
                 6799*****************98865 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.37   1.9e+02       2      15 ..      28      41 ..      27      56 .. 0.90
   2 ?   10.8   0.1   0.00078      0.39       2      22 ..     642     662 ..     641     693 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.37
                EEEEESTTSSHHHH CS
    MMR_HSR1  2 vaivGrpNvGKStL 15
                +++ G + +GKS+L
  KIR60972.1 28 IVFTGLSGSGKSSL 41
                7899*********9 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00078
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 +a+ G + +GKStL+n ++ +
  KIR60972.1 642 IAVTGVSGSGKSTLVNDILHA 662
                 89****************986 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.24   1.2e+02       3      21 ..      28      46 ..      26      55 .. 0.78
   2 ?   10.1   0.1   0.00087      0.43       3      23 ..     642     662 ..     640     672 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.24
                EEEEESTTCCHHHHHHHHH CS
        cobW  3 tvltGflGsGKTtLlnhll 21
                +v+tG  GsGK++L   ++
  KIR60972.1 28 IVFTGLSGSGKSSLAFDTI 46
                799**********977666 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00087
                 EEEEESTTCCHHHHHHHHHCT CS
        cobW   3 tvltGflGsGKTtLlnhllen 23 
                 + +tG  GsGK+tL+n +l+ 
  KIR60972.1 642 IAVTGVSGSGKSTLVNDILHA 662
                 679**************9954 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.57   2.8e+02      21      38 ..      26      43 ..      18      54 .. 0.80
   2 ?    8.8   0.1    0.0016      0.81      22      43 ..     641     662 ..     631     671 .. 0.89
   3 ?   -0.4   0.0       1.1   5.4e+02      93     149 ..     876     935 ..     857     944 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.57
                EEEEEEESTTSSHHHHHH CS
      NB-ARC 21 lvvalvGmgGvGKttlak 38
                 ++ + G  G+GK+ la 
  KIR60972.1 26 ALIVFTGLSGSGKSSLAF 43
                468899*********984 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0016
                 EEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnk 43 
                 ++a+ G  G+GK+tl+++il+ 
  KIR60972.1 641 LIAVTGVSGSGKSTLVNDILHA 662
                 799****************986 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.1
                 HHHHHHHCCCT.TEEEEEE...EE-SHHHH.....HHHHCHTTSEEEEEESBCCCCCCS-S CS
      NB-ARC  93 krklvrlLltk.rfllvlD...DVweeedwdkigvvlparenrlrvllTTRdeevanavsa 149
                   ++ + L +k ++++ +    DV ++ dw  i +     +++  vl T   eeva+  + 
  KIR60972.1 876 LLMVLEGLVDKgNTVITIEhnlDVIKTADW-LIDMGPEGGHRGGTVLATGTPEEVAEVPES 935
                 44555666666688888877779*******.9999999999********999999987665 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       2.1     1e+03       1      14 [.      28      41 ..      28      62 .. 0.88
   2 ?   11.7   0.1   0.00031      0.16       2      21 ..     643     662 ..     642     681 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 2.1
  Viral_helicase1  1 ivvhGvpGcGKStl 14
                     iv  G  G+GKS+l
       KIR60972.1 28 IVFTGLSGSGKSSL 41
                     678999******97 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00031
  Viral_helicase1   2 vvhGvpGcGKStlirkllrt 21 
                       v Gv G+GKStl+ ++l+ 
       KIR60972.1 643 AVTGVSGSGKSTLVNDILHA 662
                      79***************988 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.26   1.3e+02       1      17 [.      28      44 ..      28      68 .. 0.85
   2 ?    9.0   0.0    0.0036       1.8       2      25 ..     643     666 ..     642     692 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.26
  RNA_helicase  1 iwlyGpsgeGKStlake 17
                  i+++G sg GKS+la +
    KIR60972.1 28 IVFTGLSGSGKSSLAFD 44
                  7899*********9976 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0036
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkk 25 
                    ++G sg GKStl++++ +a+l +
    KIR60972.1 643 AVTGVSGSGKSTLVNDILHAVLAN 666
                   689*************99998843 PP

>> DUF3667  Protein of unknown function (DUF3667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00018     0.088       8      27 ..     583     602 ..     581     604 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00018
     DUF3667   8 lraLllrPGkltreYieGkR 27 
                 +++Ll +P+ +t +Y++G+R
  KIR60972.1 583 VPDLLANPESVTGAYLSGRR 602
                 799****************9 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.24   1.2e+02      16      26 ..     281     291 ..     274     301 .. 0.67
   2 ?   -0.3   0.0       2.8   1.4e+03      16      23 ..     411     418 ..     398     444 .. 0.68
   3 ?   12.2   0.2   0.00037      0.18      15      51 ..     743     775 ..     730     781 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.24
  DnaJ_CXXCXGXG  16 tCktCkGsGvv 26 
                     C++C G G++
     KIR60972.1 281 ACPECTGLGTK 291
                    47777777732 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 2.8
  DnaJ_CXXCXGXG  16 tCktCkGs 23 
                     C +C+G 
     KIR60972.1 411 PCAACGGA 418
                    24444444 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00037
  DnaJ_CXXCXGXG  15 ktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGtG 51 
                     +C++C+G G+++ e++    f   +  +C+ C+G  
     KIR60972.1 743 GRCEACSGDGTIKIEMN----FLPDVYVPCEVCKGAR 775
                    47********7666653....44566789****9975 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.67   3.3e+02      27      45 ..      23      41 ..      10      53 .. 0.77
   2 ?    9.6   0.0   0.00079      0.39      29      51 ..     639     661 ..     623     671 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.67
                S-SEEEEEEE-TTSSHHHH CS
        MeaB 27 GraqvvGltGvPGaGkstl 45
                 r   + +tG+ G+Gks l
  KIR60972.1 23 PRDALIVFTGLSGSGKSSL 41
                56677889*********87 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00079
                 SEEEEEEE-TTSSHHHHHHHHHH CS
        MeaB  29 aqvvGltGvPGaGkstlvealgl 51 
                  q + +tGv G+Gkstlv+ +  
  KIR60972.1 639 GQLIAVTGVSGSGKSTLVNDILH 661
                 57899*************98765 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2      0.27   1.3e+02       2      24 ..      28      48 ..      27      70 .. 0.78
   2 ?    9.6   0.0    0.0014      0.69       1      24 [.     641     664 ..     641     693 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.27
         PRK  2 IgvagsSGaGkttvarklekifg 24
                I  +g SG+Gk+++a  ++ if+
  KIR60972.1 28 IVFTGLSGSGKSSLA--FDTIFA 48
                7789********985..666666 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0014
         PRK   1 vIgvagsSGaGkttvarklekifg 24 
                 +I+v+g SG+Gk+t+ + + +++ 
  KIR60972.1 641 LIAVTGVSGSGKSTLVNDILHAVL 664
                 69************9888765544 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.19        96       2      24 ..      26      48 ..      25      69 .. 0.77
   2 ?    8.5   0.1    0.0021       1.1       2      25 ..     640     663 ..     639     686 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.19
     DUF2075  2 avvlVtGvaGtGKtvvllnllae 24
                a+++ tG +G+GK+ +++  +++
  KIR60972.1 26 ALIVFTGLSGSGKSSLAFDTIFA 48
                57899*********999987655 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0021
     DUF2075   2 avvlVtGvaGtGKtvvllnllael 25 
                 +++ VtGv+G+GK+ + + +l+++
  KIR60972.1 640 QLIAVTGVSGSGKSTLVNDILHAV 663
                 5789****************9988 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.42   2.1e+02      16      37 ..      22      43 ..      18      82 .. 0.84
   2 ?    8.7   0.0     0.002         1      16      37 ..     636     657 ..     630     668 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.42
      ATPase 16 ipegrvvlitGepGtGKtifal 37
                +p+++ +  tG +G+GK+ +a 
  KIR60972.1 22 LPRDALIVFTGLSGSGKSSLAF 43
                799999************8885 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.002
      ATPase  16 ipegrvvlitGepGtGKtifal 37 
                 +p g+ + +tG++G+GK++++ 
  KIR60972.1 636 FPLGQLIAVTGVSGSGKSTLVN 657
                 899***************9976 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.16        81       2      16 ..      28      42 ..      27      76 .. 0.71
   2 ?    7.2   0.0     0.011       5.5       2      20 ..     642     660 ..     641     686 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.16
      AAA_28  2 ivitGgestGKTtll 16
                iv+tG +++GK++l+
  KIR60972.1 28 IVFTGLSGSGKSSLA 42
                9************98 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.011
      AAA_28   2 ivitGgestGKTtlleaLa 20 
                 i++tG +++GK+tl++ + 
  KIR60972.1 642 IAVTGVSGSGKSTLVNDIL 660
                 89*************8754 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       5.4   2.7e+03       2      16 ..      28      42 ..      28      47 .. 0.85
   2 ?   11.1   0.0   0.00054      0.27       2      26 ..     642     666 ..     641     679 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.4
                EEEE--TTSSHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlv 16
                ++ TG +G+GK+ l 
  KIR60972.1 28 IVFTGLSGSGKSSLA 42
                678*********986 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00054
                 EEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkss 26 
                 +++TG +G+GK+Tlv+ +l+++  +
  KIR60972.1 642 IAVTGVSGSGKSTLVNDILHAVLAN 666
                 78****************9987544 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.67   3.3e+02       4      23 ..      27      46 ..      24      74 .. 0.84
   2 ?    8.0   0.0    0.0056       2.8       3      27 ..     640     664 ..     639     674 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.67
      AAA_14  4 ilvitGaRrvGKTtllkqli 23
                ++v tG+  +GK+ l+++ i
  KIR60972.1 27 LIVFTGLSGSGKSSLAFDTI 46
                6899***********99987 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0056
      AAA_14   3 kilvitGaRrvGKTtllkqlikell 27 
                 +++++tG+  +GK+tl++++++  l
  KIR60972.1 640 QLIAVTGVSGSGKSTLVNDILHAVL 664
                 5789***************998776 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.76   3.8e+02       5      20 ..      28      43 ..      24      52 .. 0.86
   2 ?    7.7   0.0    0.0051       2.6       5      28 ..     642     664 ..     638     730 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.76
      AAA_24  5 iliyGpsgiGKTtlak 20
                i+ +G sg+GK++la 
  KIR60972.1 28 IVFTGLSGSGKSSLAF 43
                7889*********996 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0051
      AAA_24   5 iliyGpsgiGKTtlakelgpkplf 28 
                 i+++G sg+GK+tl++ +  ++++
  KIR60972.1 642 IAVTGVSGSGKSTLVNDI-LHAVL 664
                 89*************998.44443 PP

>> DUF463  YcjX-like family, DUF463
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2       2.4   1.2e+03       5      15 ..      30      40 ..      28      45 .. 0.85
   2 ?    9.5   0.1   0.00085      0.42       3      28 ..     642     667 ..     641     689 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.4
      DUF463  5 vTGLsraGKtv 15
                 TGLs++GK+ 
  KIR60972.1 30 FTGLSGSGKSS 40
                6********96 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00085
      DUF463   3 lavTGLsraGKtvfitsLvnqLlaae 28 
                 +avTG s++GK++++  + + +la++
  KIR60972.1 642 IAVTGVSGSGKSTLVNDILHAVLANQ 667
                 8******************9998544 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.033        16      26      39 ..     118     131 ..     106     132 .. 0.85
   2 ?    3.0   0.0      0.22   1.1e+02      16      38 ..     269     292 ..     266     294 .. 0.68
   3 ?   -0.3   0.1       2.4   1.2e+03      27      35 ..     410     419 ..     401     421 .. 0.74
   4 ?    1.2   0.4      0.83   4.1e+02       7      36 ..     744     776 ..     744     779 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.033
  Zn-ribbon_8  26 ltaCPeCgsevrrv 39 
                  +++CP Cg++  r+
   KIR60972.1 118 EPHCPVCGERISRQ 131
                  677*****999886 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.22
  Zn-ribbon_8  16 evlqsisdapltaCPeCgs.evrr 38 
                  e+++ ++ ap  aCPeC +  +++
   KIR60972.1 269 EPRVFSFNAPYGACPECTGlGTKK 292
                  5555444677778****9866665 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 2.4
  Zn-ribbon_8  27 taCPeCgs.e 35 
                  ++C +Cg+ +
   KIR60972.1 410 VPCAACGGaR 419
                  4599999855 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.83
  Zn-ribbon_8   7 rCeeCghefevlqsis.daplta.CPeCgs.ev 36 
                  rCe+C  + ++  +++  ++  + C  C++ + 
   KIR60972.1 744 RCEACSGDGTIKIEMNfLPDVYVpCEVCKGaRY 776
                  799999999977778867777778999998665 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00083      0.41      26      49 ..     642     665 ..     631     674 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00083
       DUF87  26 lAilgsTGsGKSntvavLleelle 49 
                 +A+ g +GsGKS++v  +l+ +l+
  KIR60972.1 642 IAVTGVSGSGKSTLVNDILHAVLA 665
                 79***************9998875 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.4       8.3   4.1e+03       1      14 [.      28      41 ..      28      42 .. 0.89
   2 ?   10.0   0.1    0.0013      0.66       1      21 [.     642     662 ..     642     675 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 8.3
                EEEEEBTTTTHHHH CS
   Dynamin_N  1 iavvGsqSsGKSSv 14
                i++ G   sGKSS+
  KIR60972.1 28 IVFTGLSGSGKSSL 41
                78999999*****8 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0013
                 EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlge 21 
                 iav G   sGKS+++n +l++
  KIR60972.1 642 IAVTGVSGSGKSTLVNDILHA 662
                 89****************986 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2      0.41     2e+02      33      40 ..     282     289 ..     278     304 .. 0.64
   2 ?    0.2   0.0       1.5   7.2e+02      31      42 ..     410     421 ..     399     433 .. 0.80
   3 ?    5.7   0.6     0.029        14      12      39 ..     744     774 ..     742     778 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.41
                 -TTTTTSS CS
   Anti-TRAP  33 CPkCsGkg 40 
                 CP+C G g
  KIR60972.1 282 CPECTGLG 289
                 56665544 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.5
                 .E-TTTTTSSEE CS
   Anti-TRAP  31 leCPkCsGkgli 42 
                 ++C +C+G  l 
  KIR60972.1 410 VPCAACGGARLK 421
                 789999998765 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.029
                 E-TTTTTTSEETTE.........E-TTTTTS CS
   Anti-TRAP  12 kCdaCngsGkiepe...eprasleCPkCsGk 39 
                  C+aC g G i+ e    p   ++C  C+G 
  KIR60972.1 744 RCEACSGDGTIKIEmnfLPDVYVPCEVCKGA 774
                 69*******9999987778999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (981 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                       111  (0.00619109); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.46
# Mc/sec: 6419.62
//
Query:       KIR60973.1  [L=155]
Description: Rieske (2Fe-2S) protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-12   46.9   0.0    3.1e-12   46.3   0.0    1.2  1  Rieske      Rieske [2Fe-2S] domain
  ------ inclusion threshold ------
      0.017   14.9   5.5      0.017   14.9   5.5    2.9  2  TAT_signal  TAT (twin-arginine translocation) pathway signal 


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   3.4e-16   3.1e-12      19      86 ..      76     141 ..      61     144 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 3.4e-16
                 EEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEE.TTSBEEE-TTHHHEE CS
      Rieske  19 vkvggeplvvlrdedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwayd.adGkvikgPaprpla 86 
                 + +  + +v+ + e g+++ ++ +CtH+g+p+s+  + ++g+++C cH ++++ +dG+v+ gPa++pla
  KIR60973.1  76 LILAAKGVVITQPEAGTFKGFDPICTHQGCPVSN--V-DGGTINCTCHMSKFSiTDGSVTSGPATTPLA 141
                 44556778899988*****************988..3.4559***********************9987 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   5.5   1.9e-06     0.017       3      24 ..      14      35 ..      13      36 .. 0.96
   2 ?   -4.0   9.1       1.8   1.6e+04      10      19 ..      50      59 ..      49      67 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.9e-06
  TAT_signal  3 SRRdFLKgsAAaaAAaalggca 24
                +RR +L g++A++AA++l +c+
  KIR60973.1 14 TRRALLAGAGALGAAVVLSACG 35
                7********************7 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.8
  TAT_signal 10 gsAAaaAAaa 19
                g+AAa+ +a+
  KIR60973.1 50 GGAAATGGAG 59
                4555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1219.91
//
Query:       KIR60974.1  [L=1080]
Description: penicillin acylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.9e-112  375.4  10.3   1.3e-111  374.8  10.3    1.3  1  Penicil_amidase  Penicillin amidase
      6e-24   84.6   2.0    1.2e-23   83.6   2.0    1.5  1  F5_F8_type_C     F5/8 type C domain


Domain annotation for each model (and alignments):
>> Penicil_amidase  Penicillin amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.8  10.3  1.4e-115  1.3e-111       1     672 [.     134     936 ..     134     938 .. 0.82

  Alignments for each domain:
  == domain 1  score: 374.8 bits;  conditional E-value: 1.4e-115
                      .EEEEEEG.GGEEEEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH-........TBHHHHHHHHHHHT-HHHHHHHHHTS..... CS
  Penicil_amidase   1 pVeirrDe.wgvphIyAkneedlffaqGyvhAqdrlwqmellrrtarGrlaelfG........pealesDrllrtlglrraaeaelaal.ldpe 84 
                      +V+i+rD+ +gvph++++++ ++++++Gy+ A+drl++m+l+r+++rG+l+ ++G        ++ +     +   +l++++ea  a+  + ++
       KIR60974.1 134 DVRIVRDRaTGVPHVTGTTRGGTMYGAGYAGAEDRLFTMDLMRHVGRGTLTPFAGgapsnrelEQSVWRNSPYTEADLAAQVEALRAKGpRGEQ 227
                      69******9**********************************************776554444777777778888887777777644444445 PP

                      .HHHHHHHHHHHHHHHHH-..-S.T-HH.HHHH.....---........S.........SS-.XXXXXX.....XX...X.XXXXXXXX..... CS
  Penicil_amidase  85 tralleaYaaGvNaylaelkaka.lPlefallg.....ykp....epWtpvdslavakvmaldlagnleeelarar...alaaklgdekvaelf 165
                       +a+++ Y+aGvNay+  + a++  P e+ l+g     +      ep+t++d++a+a v++  ++g++ +e++ a    a++ak+g+ + ++++
       KIR60974.1 228 LYADVQEYIAGVNAYIGFCMANRnCPGEYVLTGhldaiT-NeggpEPFTMTDLIAIAGVVGGLFGGGGGTEMQSALvriAARAKYGPTEGDKVW 320
                      5***************999966658********766541.145558******************655555555554405555566665554443 PP

                      .................................................................................X-EEEEE-TTTBT CS
  Penicil_amidase 166 p..p.............................................................................gSNnwvvsgerTa 180
                         +                                                                              SN+ vvs++++a
       KIR60974.1 321 AgfRnqndpetvltlhdgqsfpygsaspdaasvalpdagtakvepiftdptgsaasratgstgselaaalsgltidpahrgMSNAAVVSAANSA 414
                      3221234456666666777777778888888888888888888888888998888888888888888888877777777766************ PP

                      TSS-EEEEE-EEESSGGG--EEEEEEETTEEEEEEE-TT-S.S.SEEEESSEEEEEEE-SS-SEEEEEE.EEETTEE......EEEEETTEEEE CS
  Penicil_amidase 181 sGkpllanDPHlglsapslwyqahlqapgldviGaslpGlPgv.liGhnediAWglTnagadvqdlyae.klnpddp......trylydgkwep 266
                      +G+p+++++P++g++ p+l++ ++lq+pg++++Ga+++Gl  + l+G+++d+AW++T++ +d +d+ya+  +++d++      ++yl++g++++
       KIR60974.1 415 TGHPVAVFGPQTGYFSPQLLMIQELQGPGISARGAAFAGLNLYvLLGRGQDYAWSATSSIHDITDTYAVpLCTTDGSaptlasDHYLFRGQCVA 508
                      *******************************************9*************************55666665***************** PP

                      -EEEEEEEEEE-TT.......EEEEEEEEETTEEEE-............TB--EEEE..G-TTHHHHHHHHHT--SHHHHHHHHHHH---SEEE CS
  Penicil_amidase 267 metrtetikvkggdd......svtltvreTrhGPvvsd......gka.valrwtale..pgdrsldallalnrarnvaefraalkdlaapaqnv 345
                      me+   t k k  +       s++l  ++T+ G v ++      ++a   lr t+++  +++ ++++++++ ++ +++ f a++ ++++ a+n+
       KIR60974.1 509 MEQLAHTNKWKPTAAdttpagSYKLVAWRTKLGLVAWRgtvggkPHAfTQLRSTYRHeaDSAIGFQMFNDPTQMGTADAFVASAGNVEY-AFNW 601
                      *******999887778999*******************888765444888898888899999**************************9.**** PP

                      EEEETT--EEEE--S--B---...TT--EEETT-GGGS--.........TB--GGGS-EEEE..SSEEEESSS----S.........--T-HHH CS
  Penicil_amidase 346 vyADreGnigyqaagrvPvrpaaddgllpvpGsdsayeWt.........gyipfeelPqvvnPargyivtaNnrvlpddypaalgsdwappyRa 430
                      +y++++ + +y+++g +P+r+a+++++lp++++ +ayeW+          y+p +++P++v+  ++y+v++Nn+  +d   a+ + ++++ +R+
       KIR60974.1 602 FYVNST-QSAYFNSGLNPLRAAGSNPNLPMKAE-PAYEWQgfqpdtntaSYAPRSAHPNSVD--QDYYVSWNNKQAKDFGGADGNFSFGAVHRG 691
                      ******.9*************6568******98.88***98999999988999*********..**********6666556666667******* PP

                      HHHHHHH..S.S...-B-HHHHHHHHHT-..BBTHHHHHHHHH........-..GGGHHHHHHHHH-...SB-STT..........-THHHHHH CS
  Penicil_amidase 431 rrirelLeek.aagkkvtledmaalqtdt..rsllaerllpll.al....eaaeaeaaaaldlLraW..dgrmdad..........saaaalfa 504
                      + +++ L++  aagkk +++++++l   +  ++l++ ++l++l ++       +a++aa +++L+aW   g ++ +            a++ f+
       KIR60974.1 692 DLLDKPLKAGiAAGKKYDRATLTELVERAglTDLRGVEVLDELiRVlesqPVGDATLAAEIAKLKAWrqAGALRVEtakgskvyqhADAIRTFD 785
                      *******************************************93334453333345668*******5546666653344434333455999** PP

                      HHHHHHTT.......................---TTSTTT-SE.SHH.HHHHHHHHHHHHHHHST-T-B.....HHHHEEEE.E........EE CS
  Penicil_amidase 505 awlaalvralfedelg.rlaealeklle.dasfwwddptttpk.trdelllaalaealaeleaaglgadpakwrwgklhrlelrhplgfnrglp 595
                      aw++ lvr +f+d+lg +l++al + l+ ++s     p+  ++ +++  l ++ +ea a    +++++   +w wg++++ +lr +lg     p
       KIR60974.1 786 AWWPLLVRGVFRDQLGpDLYQALINALQiNES-----PSGHQQgDKS-NLPTSANEAQA----HKGSSFQYGW-WGYVDK-DLRAVLG----DP 863
                      ****************9778888888885322.....2222232333.34444444444....4333334589.******.99**999....9* PP

                      ---B-GGG.........EEEEEE..E-EEEEE.E--T.S....EEEEETT-S-S-TTSTTSSHHHHHHHTT--EEE--SHHHH CS
  Penicil_amidase 596 vgGgeetvnatsysarafrvtrg..psyrmvv.dladrdk...aravlpgGqsgnpgsphyaDqlelwaegeylplpfteaai 672
                      v+Gg +           ++++ g  + +r+++ d+ + ++   a++++pg+  + +g++++aD + +   g++++  + ++++
       KIR60974.1 864 VAGGLGR----------TYCGGGalAGCRQILlDTLKAAAatpATTTYPGDSTCSAGDQWCADAIVQSPLGGIKHATIAWQNR 936
                      ******9..........4566666699****997766644478*************************************987 PP

>> F5_F8_type_C  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   2.0   1.4e-27   1.2e-23       2     125 ..     962    1074 ..     961    1075 .. 0.91

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 1.4e-27
                    EEESSCSSTTTGGGGGGSSSTTSSEE.ESSSSTTEEEEEEEEEEEEEEEEEEEECSSTTSSEEEEEEEEEESSSSSEEEEEEECEEESSSSSSSE CS
  F5_F8_type_C    2 itasseesgewpaaaaldGnkntaWs.ssssddkqwlqvdLgkpkkidgvvtqgrqdggnayvksykiqvsddgetWttvkdekvpgnsdnstpv 95  
                    +tass  + ++ a +a+dG+ +t+W+ s+++d  q+l+vdLg+++ + +v + ++    +ay+ksy+i+vs dg+tW+tv +   ++  d ++++
    KIR60974.1  962 VTASSA-QLGYAAGKAVDGDLGTRWAsSWADD--QTLTVDLGSARSVGRVALAWE----SAYAKSYRIEVSADGTTWRTVWS---TTAGD-GGTD 1045
                    7999*9.9999***************777777..9********************....***********************...44334.5688 PP

                    EEEEEEEEEEEEEEEEEEEEESSSSSEEEE CS
  F5_F8_type_C   96 tntfdppvkaryvrltptswnggngialra 125 
                    ++ f+   +aryvr++++++++  g++l++
    KIR60974.1 1046 VVAFP-VETARYVRMRGLTRATTYGFSLWE 1074
                    99999.7779*************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1080 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.48
# Mc/sec: 6764.82
//
Query:       KIR60975.1  [L=653]
Description: excinuclease ABC subunit C [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-50  170.5   0.0    6.3e-50  169.1   0.0    1.7  2  UvrC_HhH_N  UvrC Helix-hairpin-helix N-terminal
      5e-12   46.2   0.1    1.3e-11   45.0   0.1    1.7  1  HHH_5       Helix-hairpin-helix domain
    5.7e-11   42.5   0.0    1.4e-10   41.3   0.0    1.7  1  GIY-YIG     GIY-YIG catalytic domain
      2e-10   40.0   4.8    4.3e-10   39.0   4.8    1.6  1  UVR         UvrB/uvrC motif
    1.2e-09   38.1   0.0    3.9e-09   36.5   0.0    1.8  1  HHH_2       Helix-hairpin-helix motif
    1.2e-08   34.4   0.4    1.6e-06   27.6   0.2    2.8  2  HHH         Helix-hairpin-helix motif
     0.0018   18.5   0.0       0.22   11.9   0.0    3.0  2  IMS_HHH     IMS family HHH motif
  ------ inclusion threshold ------
      0.046   14.1   0.3       0.41   11.0   0.0    2.8  3  HHH_8       Helix-hairpin-helix domain
       0.07   13.4   0.0       0.81   10.0   0.1    2.2  2  HHH_3       Helix-hairpin-helix motif
       0.19   12.3   0.4        5.8    7.6   0.0    3.0  3  5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold


Domain annotation for each model (and alignments):
>> UvrC_HhH_N  UvrC Helix-hairpin-helix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.1   5.6e+03      53      67 ..     232     247 ..     214     255 .. 0.73
   2 !  169.1   0.0   3.5e-53   6.3e-50       2     154 .]     394     570 ..     393     570 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.1
                 S.--HHHHHHHHHHHH CS
                 x.xxxxxxxxxxxxxx RF
  UvrC_HhH_N  53 e.gdDyaamrevlrRr 67 
                 +  dD+aa+r +++++
  KIR60975.1 232 RlRDDVAALRRAMEKQ 247
                 2489999999988875 PP

  == domain 2  score: 169.1 bits;  conditional E-value: 3.5e-53
                 HHTT-SS---EEEEEEEEEETTTEEEEEEEEEETTEE-GGG-EEEEEE.-SS--HHHHHHHHHHHHHTTS............................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
  UvrC_HhH_N   2 ellglkekpkriecyDiShiqgtntvgsmvvfedgkpkkseyRkfkiksvkegdDyaamrevlrRrfkrllke.......................... 74 
                 ++lg++++p riecyD+S+iqgt++v+smvvfedg p+kseyR+f ++   + dD++am+evlrRrf r+l++                          
  KIR60975.1 394 DALGMRTSPLRIECYDVSQIQGTDVVASMVVFEDGLPRKSEYRRFIVR--GATDDLSAMSEVLRRRFARYLEAraetgelgeetaadpdrpgidpttgr 490
                 6899********************************************..568******************99************************** PP

                 .....---SEEEESSSHHHHHHHHHHHHHTT-.---EEEEES.............SSSEE.EE--TT-HHHHHHHHHHHHHHHHHH CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  UvrC_HhH_N  75 ...fsklPdLiliDGGkgqlnaakevleelgl.kipvvglaKdkkrktraka.eereeev.lelkkssealkllqrirdeaHrfAI 154
                    f++ P+L+++DGG  q++aa ++l+elg+ +++++glaK  ++     +     +e+ ++l+++se l+llqr+rdeaHrfAI
  KIR60975.1 491 prrFAYPPQLVVVDGGAPQVAAAAQALAELGVdDVALCGLAKRLEE-----VwL-PDDEFpVILPRTSEGLYLLQRVRDEAHRFAI 570
                 ******************************************3322.....121.223446************************8 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.1     7e-15   1.3e-11       3      55 ..     585     636 ..     583     637 .. 0.95

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 7e-15
                 HHHTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHH CS
       HHH_5   3 eLlsvsGiGpktAlallsaGiesvedlaaadveeLakipGiGkktAeriilel 55 
                  L sv+G+G+++ +all++ ++s+  laaa++ee++++pG+G +tAe i  +l
  KIR60975.1 585 ALDSVPGLGEVRRKALLRH-FGSLKRLAAASTEEITEVPGVGRRTAEAITAAL 636
                 589****************.*****************************8876 PP

>> GIY-YIG  GIY-YIG catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0     8e-14   1.4e-10       3      76 ..      19      92 ..      17      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 8e-14
                EEEEEEETTT--EEEEEESSHHHHHHHHHHHHHHT--S-H.S.STEEEE.EEEE----HHHHHHHHHHHHHHTTSS CS
     GIY-YIG  3 gvYiirskenkliYvGstknlekRlkqHnagkkakytrkk.gkkpfeli.ileifptksealelEkklikkyksnk 76
                gvY +r+ ++ +iYvG++knl++Rl++++a+ ++ + r+  ++++ e + +++   t+ eal+lE+ +ik+y + +
  KIR60975.1 19 GVYRFRDGTGRVIYVGKAKNLRSRLNSYFADLWGLHQRTQqMVTTAESVdWVT-VGTEVEALQLEYTWIKQYDP-R 92
                9*********************************9999989888888884555.55666667**********98.4 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   4.8   2.4e-13   4.3e-10       2      35 ..     209     242 ..     208     243 .. 0.94

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 2.4e-13
         UVR   2 klikeLeeemeeAaenedFEkAAklRDqinalkk 35 
                  ++++Le+em+eA+e+++FEkAA+lRD ++al++
  KIR60975.1 209 TMVRKLEREMTEASEALEFEKAARLRDDVAALRR 242
                 5899****************************96 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   2.1e-12   3.9e-09       8      55 ..     589     636 ..     585     640 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 2.1e-12
       HHH_2   8 IrhVGektAklLakrFksldaLkkasleeLlevddiGeeiAqsivefF 55 
                 ++  Ge   k+L ++F+sl +L++as+ee++ev+++G ++A++i+  +
  KIR60975.1 589 VPGLGEVRRKALLRHFGSLKRLAAASTEEITEVPGVGRRTAEAITAAL 636
                 678899999***********************************9766 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.03        55      12      28 ..     585     601 ..     582     603 .. 0.82
   2 !   27.6   0.2   9.1e-10   1.6e-06       1      29 [.     606     634 ..     606     635 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.03
                 HHHTSTT-SHHHHHHHH CS
         HHH  12 eLlalPGVGpktAeaIl 28 
                  L ++PG G+ +  a l
  KIR60975.1 585 ALDSVPGLGEVRRKALL 601
                 689********999987 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 9.1e-10
                 SHHHHHTSSHHHHHTSTT-SHHHHHHHHH CS
         HHH   1 sleglipasreeLlalPGVGpktAeaIls 29 
                 sl++l +as ee++++PGVG+ tAeaI +
  KIR60975.1 606 SLKRLAAASTEEITEVPGVGRRTAEAITA 634
                 6899***********************75 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.071   1.3e+02      13      31 ..     586     605 ..     575     605 .. 0.86
   2 !   11.9   0.0   0.00013      0.22      12      27 ..     617     632 ..     613     637 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.071
     IMS_HHH  13 itkipGiGgklgek.LeklG 31 
                 + ++pG+G +  +  L+++G
  KIR60975.1 586 LDSVPGLGEVRRKAlLRHFG 605
                 789********999888876 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00013
     IMS_HHH  12 pitkipGiGgklgekL 27 
                 +it++pG+G++++e +
  KIR60975.1 617 EITEVPGVGRRTAEAI 632
                 69***********985 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       4.8   8.7e+03      13      31 ..     212     230 ..     209     233 .. 0.46
   2 ?   -2.5   0.0       3.8   6.8e+03      44      57 ..     583     594 ..     575     600 .. 0.73
   3 ?   11.0   0.0   0.00023      0.41      36      67 ..     608     636 ..     602     637 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.8
                 HHHHHCT--CCCHHHHHHH CS
       HHH_8  13 dllelkgedpfrvraYrrA 31 
                 + le++ +++  ++ + +A
  KIR60975.1 212 RKLEREMTEASEALEFEKA 230
                 3344444444444455555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.8
                 HHTTHCTTSTT--H CS
       HHH_8  44 sleeeltklpgiGk 57 
                 +   +l ++pg+G+
  KIR60975.1 583 E-S-ALDSVPGLGE 594
                 2.2.5999****96 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00023
                 CC-SS-HHHHTTHCTTSTT--HHHHHHHHHHH CS
       HHH_8  36 ealpeeitsleeeltklpgiGkkiaakieeil 67 
                 ++l  + t+  e +t++pg+G ++a+ i+  l
  KIR60975.1 608 KRLAAASTE--E-ITEVPGVGRRTAEAITAAL 636
                 444444444..5.***************9876 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.43   7.7e+02      12      26 ..     582     596 ..     580     604 .. 0.75
   2 ?   10.0   0.1   0.00045      0.81      10      32 ..     612     634 ..     609     636 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.43
       HHH_3  12 saeeLqklpGlgpkl 26 
                 +++ L+ +pGlg++ 
  KIR60975.1 582 TESALDSVPGLGEVR 596
                 678899999999875 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00045
       HHH_3  10 tAsaeeLqklpGlgpklAknIva 32 
                  As ee++ +pG+g ++A++I a
  KIR60975.1 612 AASTEEITEVPGVGRRTAEAITA 634
                 59*******************86 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       8.3   1.5e+04      56      76 ..     221     240 ..     204     247 .. 0.44
   2 ?   -1.9   0.0         3   5.4e+03      44      81 ..     359     397 ..     352     411 .. 0.68
   3 ?    7.6   0.0    0.0032       5.8      22      50 ..     588     617 ..     582     635 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8.3
  5_3_exonuc  56 lkekLeenkeearlskkLati 76 
                 + e+Le  ++ arl  ++a +
  KIR60975.1 221 ASEALE-FEKAARLRDDVAAL 240
                 333332.23344555555554 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3
  5_3_exonuc  44 ilenld.elkekklkekLeenkeearlskkLatiktdvp 81 
                 +le ++ ++k+  +++kL+++ +     k L +i + + 
  KIR60975.1 359 LLETVErNAKDALARHKLKRGSDLTTRGKALDEISDALG 397
                 555555444556678899998888888888888876654 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0032
  5_3_exonuc  22 GvpgiGektAakLlkeygsleeilenld.e 50 
                  vpg Ge   ++Ll+++gsl+ + ++   e
  KIR60975.1 588 SVPGLGEVRRKALLRHFGSLKRLAAASTeE 617
                 688888888888888888888887754423 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 4190.41
//
Query:       KIR60976.1  [L=743]
Description: peptidase S8 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-31  109.9  11.2    1.3e-31  109.9  11.2    2.0  2  Peptidase_S8  Subtilase family
    3.1e-30  104.0   0.1    6.3e-17   61.4   0.0    2.7  3  P_proprotein  Proprotein convertase P-domain
    0.00024   21.7   0.0    0.00046   20.8   0.0    1.5  1  Inhibitor_I9  Peptidase inhibitor I9
     0.0093   16.4   0.3         11    6.5   0.0    3.6  3  MG2           MG2 domain
  ------ inclusion threshold ------
      0.034   15.0   0.1        3.7    8.5   0.0    3.3  3  CelD_N        Cellulase N-terminal ig-like domain
       0.32   12.1  11.0        2.2    9.4   3.5    4.3  4  PPC           Bacterial pre-peptidase C-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.9  11.2   4.5e-35   1.3e-31      52     281 ..     182     382 ..     115     394 .. 0.85
   2 ?   -1.1   0.1      0.31   9.2e+02     181     224 ..     645     690 ..     626     707 .. 0.76

  Alignments for each domain:
  == domain 1  score: 109.9 bits;  conditional E-value: 4.5e-35
                   T-SC-SSS.....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-SSTTSB-HH..HHHHHHHHHHHHCT-S....EEEE-EESCETTCHHCHHHH CS
                   xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  52 nwarddngnsie.HGthvAGiaaanapeegekngvapgakilsvkvldtsggsmetgteliraieeaaedkvd....vinmslgestslpktgrsie 143
                    +++ d  +  + HGthvAG+ +++        gva  +++ +v+vl+  gg+    +++i++++++  d+      v nmslg++   p ++    
    KIR60976.1 182 MDNDADATDC-QgHGTHVAGTLGGS------TFGVAKHVQLVAVRVLSCTGGAWA--SQVIAGVDWVTGDHDPgelaVANMSLGGAAYAPMVE---- 265
                   3333332222.13**********99......99**************88888765..9***********44335999*******777777666.... PP

                   HHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEEESTTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 144 alainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvgayttegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglss 240
                     a++r +   gv + ++aGN++       a +   tp++  ++itv+a+  ++  a+fS+ G ++      d+ apG++i s +   + ++     
    KIR60976.1 266 --AVRRSI-ADGVTYAVAAGNEN------GADACTTTPASVPEAITVAATGANDARASFSNIGTCV------DLFAPGVDITSAYIGGT-AT----- 341
                   ..99****.88************......67788899****************************9......6*******888888887.22..... PP

                   EEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 241 yqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntA 281
                   + + sGTSmAsP++agaaAl+l ++p +tp++v +all  A
    KIR60976.1 342 TRTASGTSMASPHVAGAAALILAEHPTYTPAQVTQALLADA 382
                   6899*********************************9887 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.31
                   TTTSTTCEEEEEESTTSSB-TT--B-TT.........-EEEE-S-C CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
  Peptidase_S8 181 pstsknvitvgayttegkiapfSsrGpssd..gklkpdivapGgni 224
                    +t ++ i+v  +  + +  ++ + + +++    l+ ++vapGg++
    KIR60976.1 645 SGTVESPISVPDCGRAPSTTSYVEVSIAHQfgRDLQISLVAPGGQV 690
                   444557788888888888888888888888877899********93 PP

>> P_proprotein  Proprotein convertase P-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       5.1   1.5e+04      51      69 ..     471     489 ..     459     495 .. 0.69
   2 !   61.4   0.0   2.1e-20   6.3e-17       5      85 ..     545     621 ..     542     622 .. 0.96
   3 !   39.8   0.0   1.1e-13   3.4e-10       6      86 .]     667     743 .]     663     743 .] 0.87

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 5.1
                   EESTTTTS---EEEEEEEE CS
  P_proprotein  51 msthlwgeraeGeWkLevk 69 
                    ++ + + + +G+++++v 
    KIR60976.1 471 LTVGTASTTLAGTYTVTVI 489
                   4555666777888888875 PP

  == domain 2  score: 61.4 bits;  conditional E-value: 2.1e-20
                   EEEEEEEESSGGGEEEEEE-TTS-EEEEE---TT---SS-EEEEEEEESTTTTS---EEEEEEEEESSTT--EEEEEEEEE CS
  P_proprotein   5 qvsvnithtrrgdlritLvsPsGtrsvLlnrrgkdksrsgfldwtfmsthlwgeraeGeWkLevkdseeedtgtlkswkLr 85 
                   +v+v+i+h+ +g+l ++L+sP+Gt + L++++g     s+  d+tf+ + l++e+a+G+W+L v+d+ ++ tg l+swk++
    KIR60976.1 545 TVEVHIEHAVIGELDVRLISPRGTWYFLMDHTGG---DSDRIDYTFTYD-LSAEPANGTWNLYVSDNLAQGTGFLDSWKIN 621
                   79********************************...899*******99.*****************************97 PP

  == domain 3  score: 39.8 bits;  conditional E-value: 1.1e-13
                   EEEEEEESSGGGEEEEEE-TTS-EEEEE---TT---SS-EEEEEEEESTTTTS---EEEEEEEEESSTT--EEEEEEEEEE CS
  P_proprotein   6 vsvnithtrrgdlritLvsPsGtrsvLlnrrgkdksrsgfldwtfmsthlwgeraeGeWkLevkdseeedtgtlkswkLrl 86 
                   v+v+i h+   dl+i Lv+P G++++L+++      + +++  +    +l+g +  G+WkL+v++  ++ +g ++ wkL+l
    KIR60976.1 667 VEVSIAHQFGRDLQISLVAPGGQVVLLKESPVG---SYKANAREAYIADLSGRPTLGTWKLRVEN-VAGYEGLIEGWKLTL 743
                   89*********************9999999998...4555555555555****************.9999*********86 PP

>> Inhibitor_I9  Peptidase inhibitor I9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.5e-07   0.00046       2      80 ..      51     119 ..      50     121 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.5e-07
                   EEEEE-TTS-HHHHHHHHHHHHH....HHHHTT..--EEEEEEESSSSSEEEEEE-GGGHHHHHTSTTEEEEEEEEEEE CS
  Inhibitor_I9   2 YIVtfkeaakaakkassheswhqsllksvlkgedsakagilysYkilfnGfavklteeqaeklrkrpeVesVepDqsvr 80 
                   Y+V++++aa +a+     +   +   ++++++   +   +   Y+++++Gf ++l+e  a +l+++p V+sV ++++v+
    KIR60976.1  51 YVVVLRDAAVTAD----AVPATA---RRLASR---QGGHVGLVYRHALRGFEARLSERGARRLAADPAVASVTQNRTVS 119
                   6666665433333....222222...122222...36667778*********************************997 PP

>> MG2  MG2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.042   1.3e+02      33      80 ..     440     488 ..     419     507 .. 0.74
   2 !    6.5   0.0    0.0038        11      38      86 ..     560     610 ..     541     620 .. 0.73
   3 ?    2.0   0.0     0.097   2.9e+02      35      81 ..     678     727 ..     666     738 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.042
                 -EEEEEEEE-TTSSEEEEEEE.EE-CTTEEEEEEE--TT--SEEEEEEE CS
         MG2  33 klplkltirdpdgkevkelpl.atdetggaesefalpeaaklGeysvel 80 
                 ++p+ l +r    +++ +++    +++ g   ++ + +++  G+y+v++
  KIR60976.1 440 SQPVALAVRGLPAGVTATFQSaSISSNAGTTLTVGTASTTLAGTYTVTV 488
                 36999999998888888888856677777999***************99 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0038
                 EEEE-TTSSEEEEEEEEE-CTTE..EEEEEE--TT--SEEEEEEEEECSTT CS
         MG2  38 ltirdpdgkevkelplatdetgg..aesefalpeaaklGeysvelsadsae 86 
                 +++ +p+g  ++ ++ +  ++    + ++++l++++  G++++++s++ a+
  KIR60976.1 560 VRLISPRGTWYFLMDHTGGDSDRidYTFTYDLSAEPANGTWNLYVSDNLAQ 610
                 5555666666666665433333336889999**************766555 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.097
                 EEEEEEE-TTSSEEEEEEE...EE-CTTEEEEEEE--TT--SEEEEEEEE CS
         MG2  35 plkltirdpdgkevkelpl...atdetggaesefalpeaaklGeysvels 81 
                  l+++++ p+g++v  ++      +++    +  +l+  + lG+++++++
  KIR60976.1 678 DLQISLVAPGGQVVLLKESpvgSYKANAREAYIADLSGRPTLGTWKLRVE 727
                 67777777777776655554454444444556667888889999999983 PP

>> CelD_N  Cellulase N-terminal ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.2   3.6e+03      72      84 ..     479     491 ..     454     493 .. 0.83
   2 ?    1.9   0.0      0.14   4.2e+02      52      83 ..     575     606 ..     565     608 .. 0.88
   3 ?    8.5   0.0    0.0012       3.7      27      84 ..     674     729 ..     650     731 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.2
                 XXXXXXXXXXXXX CS
      CelD_N  72 ttpGtYtikvdgl 84 
                 t +GtYt++v g+
  KIR60976.1 479 TLAGTYTVTVIGT 491
                 6689999999877 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.14
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      CelD_N  52 kagsdessgenvhiiDFSdfttpGtYtikvdg 83 
                  +g d++  ++++++D+S+    Gt+ + v +
  KIR60976.1 575 HTGGDSDRIDYTFTYDLSAEPANGTWNLYVSD 606
                 578899999****************9998876 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0012
                 XXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      CelD_N  27 eassplqfelvdaktgkvvytgtlkkagsdessgenvhiiDFSdfttpGtYtikvdgl 84 
                 + +  lq++lv a  g+vv+  + ++ gs ++  ++ +i+D+S   t Gt++++v+++
  KIR60976.1 674 QFGRDLQISLV-APGGQVVLLKE-SPVGSYKANAREAYIADLSGRPTLGTWKLRVENV 729
                 56677889999.77889888877.688888999999*******************976 PP

>> PPC  Bacterial pre-peptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.1   3.3e+03      33      62 ..     280     309 ..     255     312 .. 0.79
   2 ?    9.4   3.5   0.00074       2.2       6      68 ..     418     488 ..     417     490 .. 0.67
   3 ?    2.5   0.1      0.11   3.3e+02      14      69 ..     545     605 ..     538     606 .. 0.68
   4 ?    1.1   0.0       0.3   8.9e+02       9      40 ..     660     693 ..     659     727 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.1
                 TT..-SS-EE-STT-TTS-TTS-EE-SSSE CS
         PPC  33 sngtsvaaydansapsgsdeyieftapqaG 62 
                 + g+++ a++++  p ++ e i+++a+ a+
  KIR60976.1 280 AAGNENGADACTTTPASVPEAITVAATGAN 309
                 445888888888899999999999998875 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00074
                 EEEE-TT-EEEEEES-TT.......SEEEEE-TT..-SS-EE-ST...T-TTS-TTS-EE-SSSEEEEEEE CS
         PPC   6 sfevpagdsltididggti.....dldLylldsngtsvaaydans...apsgsdeyieftapqaGtYyvaV 68 
                 s++v+ag+++t +i g  +      + L ++    +++a+++ +s   + ++    ++ + + aGtY v V
  KIR60976.1 418 SVTVTAGGTVTTTIAGSVTrgasqPVALAVRGLPAGVTATFQSASissNAGTTLTVGTASTTLAGTYTVTV 488
                 79************999999877644455444444555555555544155555444445559*******99 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.11
                 EEEEEES-TT...SEEEEE-TT..-SS-EE-STT-TTS-TTS-EE-.......SSSEEEEEEE. CS
         PPC  14 sltididggti.dldLylldsngtsvaaydansapsgsdeyiefta.......pqaGtYyvaVs 69 
                 ++++ i+   i  ld++l  + gt +        ++g++ +i++t+       p+ Gt+ + Vs
  KIR60976.1 545 TVEVHIEHAVIgELDVRLISPRGTWYFL---MDHTGGDSDRIDYTFtydlsaePANGTWNLYVS 605
                 4666666666666777777777665555...2334456678888888888999******99987 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.3
                 E-TT-E.EEEEES-TT...SEEEEE-TT..-SS- CS
         PPC   9 vpagds.ltididggti.dldLylldsngtsvaa 40 
                 +p+++s ++++i   ++ dl + l  + g++v  
  KIR60976.1 660 APSTTSyVEVSIAHQFGrDLQISLVAPGGQVVLL 693
                 578899999***9999999999999999865544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 4965.91
//
Query:       KIR60977.1  [L=167]
Description: hypothetical protein TK50_24575 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1351.37
//
Query:       KIR60978.1  [L=67]
Description: regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-21   76.2   1.2    1.6e-21   76.1   1.2    1.0  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   1.2     9e-26   1.6e-21       2      54 .]      10      62 ..       9      62 .. 0.95

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 9e-26
      DUF397  2 tWrKSsySgggggnCVEvaalpdavavRDSkdpdgpvLtftpaewaaFlagvk 54
                +WrKS +S+++g+nCVEva+l+da avRDSkdp gp+L+f++++w++F+ g++
  KIR60978.1 10 KWRKSGRSSASGSNCVEVAELSDALAVRDSKDPGGPALRFDRDAWSSFVVGLR 62
                6**********************667***********************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       140  (0.00780858); expected 358.6 (0.02)
Passed bias filter:                      119  (0.00663729); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 500.38
//
Query:       KIR60979.1  [L=299]
Description: hypothetical protein TK50_24590 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00023   20.7   0.3    0.00042   19.9   0.3    1.4  1  SWIM      SWIM zinc finger


Domain annotation for each model (and alignments):
>> SWIM  SWIM zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.3   2.3e-08   0.00042       8      39 ..      60      87 ..      53      88 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.3e-08
        SWIM  8 ervrlnkatCsCpefqkngipCkHalAvllal 39
                   + ++a C+Cp+   +  +C Ha+A++l +
  KIR60979.1 60 T-ADGFTAECDCPD---GAGLCAHAVALTLVA 87
                4.55679*******...***********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2196.88
//
Query:       KIR60980.1  [L=330]
Description: hypothetical protein TK50_24595 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0043   16.6   2.0     0.0043   16.6   2.0    1.7  2  DUF373     Domain of unknown function (DUF373)
  ------ inclusion threshold ------
       0.93    9.9   9.0      0.077   13.4   2.2    2.6  3  DUF3262    Protein of unknown function (DUF3262)
        3.9    7.1   9.0        1.8    8.1   1.4    2.9  3  CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
        9.2    6.1  11.7       0.25   11.2   3.6    2.5  3  EptA_B_N   Phosphoethanolamine transferase EptA/EptB


Domain annotation for each model (and alignments):
>> DUF373  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.18   8.1e+02     180     246 ..      36     105 ..      26     145 .. 0.57
   2 !   16.6   2.0   9.6e-07    0.0043     157     316 ..     149     307 ..     135     321 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.18
      DUF373 180 alaiillllGlylllrGfg...ldelleelleklkesleegritfvtyvvallllligiisgyislesvs 246
                 al+++l +lG++ll    +   +d+++ + ++++     +++  +  + +++++++++ i+g+ ++ ++ 
  KIR60980.1  36 ALIVLLSVLGGFLLTVVWSaefVDQTIGDNVANTLLGHDAKETPIQGIAAGIVFAFVSGIAGTFTACNIA 105
                 5666677777776654444111233333333333333334444444444555556666666666555554 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 9.6e-07
      DUF373 157 iLvplGlllliyallll....lglpelalaiillllGlylllrGfgldelleelleklkesleegritfvtyvvallllligiisgyislesvssasvs 251
                 i++++G ++  ++ + +    l++ ++  +++++l+Gl++++ G+    ++++ ++++ + + +  ++f+ +++a +l+   +    +++ ++ +   s
  KIR60980.1 149 IVGLVGTAMPQFSTAPTtpggLSPRSIQSMVVFGLIGLVMVYLGLASLGIVADPFARIARRFPNAPMVFMGALIAGFLIGRPFPLFRQMFRDAAE---S 244
                 555566666555555558988888889999****************9999*************************99988777666555555555...3 PP

      DUF373 252 sglltlilafiyg.....avewlalailtaslgkiideylkreekdiarllllpflvlaiglvlygasay 316
                  + l  ++af+ +     ++  +++ +l+ ++g+ ++++++++  ++ ++l+++ +++a      ga+++
  KIR60980.1 245 GNPLYGAAAFTLQslgniVIMAVLFLLLAWLAGSRLQRWFAER-PSRLAVLTAVAFIVA------GAFTF 307
                 4445555555444212123344444444555566666666444.444444444444443......33333 PP

>> DUF3262  Protein of unknown function (DUF3262)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1         1   4.7e+03      22      38 ..      37      53 ..      29      58 .. 0.56
   2 ?   -1.7   0.0      0.85   3.8e+03      13      35 ..     168     190 ..     161     197 .. 0.65
   3 ?   13.4   2.2   1.7e-05     0.077      18      60 ..     254     296 ..     249     308 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1
     DUF3262 22 lliagillvvllLwaaW 38
                l+++  +l   lL ++W
  KIR60980.1 37 LIVLLSVLGGFLLTVVW 53
                34444444444555555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.85
     DUF3262  13 sGvspsalklliagillvvllLw 35 
                  G+sp +++ +++  l+ ++++ 
  KIR60980.1 168 GGLSPRSIQSMVVFGLIGLVMVY 190
                 56777777777776666655554 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 1.7e-05
     DUF3262  18 salklliagillvvllLwaaWalvsvYkgWaeekiseadllsl 60 
                  +l+ l  +++++vl+L++aW + s  ++W +e+ s+ ++l++
  KIR60980.1 254 FTLQSLGNIVIMAVLFLLLAWLAGSRLQRWFAERPSRLAVLTA 296
                 555666667999*******************999888777665 PP

>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.8      0.03   1.3e+02     153     197 .]     149     191 ..     130     191 .. 0.71
   2 ?   -1.7   0.0      0.42   1.9e+03     139     161 ..     208     230 ..     204     245 .. 0.80
   3 ?    8.1   1.4   0.00041       1.8     139     181 ..     257     300 ..     255     313 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.03
   CPP1-like 153 vvGlllGsllasllqvdvalsglsseellvslvtlvllwlvslfL 197
                 +vGl +G+++ +  +  ++ +g  s+  ++s+v++ l+ lv ++L
  KIR60980.1 149 IVGL-VGTAMPQFSTA-PTTPGGLSPRSIQSMVVFGLIGLVMVYL 191
                 3333.56666666544.88899999999*******9999998887 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.42
   CPP1-like 139 kklgravlltlvgLvvGlllGsl 161
                 +++  a ++ +++L++G+l+G  
  KIR60980.1 208 RRFPNAPMVFMGALIAGFLIGRP 230
                 56777777888999999999975 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00041
   CPP1-like 139 kklgravlltlvgLvvGlllGsllasllqvd.valsglsseell 181
                 ++lg  v++++++L++++l+Gs l+ ++ +    l+ l++ + +
  KIR60980.1 257 QSLGNIVIMAVLFLLLAWLAGSRLQRWFAERpSRLAVLTAVAFI 300
                 5788889********************98765444433333333 PP

>> EptA_B_N  Phosphoethanolamine transferase EptA/EptB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.85   3.8e+03      67      87 ..      37      57 ..      33      71 .. 0.55
   2 ?   -0.8   0.1      0.29   1.3e+03      64      84 ..     171     191 ..     168     249 .. 0.60
   3 ?   11.2   3.6   5.6e-05      0.25      62     126 ..     253     317 ..     235     329 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.85
                HHHHHHHHTHHHHHHHHH-EE CS
    EptA_B_N 67 lllyllllgvlPallllrvki 87
                l++ l +lg + +++++ ++ 
  KIR60980.1 37 LIVLLSVLGGFLLTVVWSAEF 57
                344445555555555555544 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.29
                 -HHHHHHHHHHTHHHHHHHHH CS
    EptA_B_N  64 slklllyllllgvlPallllr 84 
                 s++++  ++++g++ ++++++
  KIR60980.1 171 SPRSIQSMVVFGLIGLVMVYL 191
                 555555555555555555443 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 5.6e-05
                 T--HHHHHHHHHHTHHHHHHHHH-EE----HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH CS
    EptA_B_N  62 llslklllyllllgvlPallllrvkikrksllkellkrlalllvallvivlvallfykdyaslfR 126
                  ++l++l  +++++vl +ll +++  + +++  e  +rla+l + ++++++++++ y d+  l R
  KIR60980.1 253 AFTLQSLGNIVIMAVLFLLLAWLAGSRLQRWFAERPSRLAVLTAVAFIVAGAFTFLYWDVRLLAR 317
                 58999**********************************66666666666666666777666644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 2360.85
//
Query:       KIR60981.1  [L=326]
Description: sporulation protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-28   97.6   0.0    9.9e-28   96.0   0.0    1.9  1  WhiA_N          WhiA N-terminal LAGLIDADG-like domain
    7.1e-25   86.9   0.0    1.3e-24   86.1   0.0    1.5  1  LAGLIDADG_WhiA  WhiA LAGLIDADG-like domain
    1.3e-18   67.1   0.0    1.9e-18   66.6   0.0    1.3  1  HTH_WhiA        WhiA C-terminal HTH domain
  ------ inclusion threshold ------
      0.041   14.3   0.0       0.12   12.8   0.0    1.7  1  DUF1697         Protein of unknown function (DUF1697)
        1.7    8.7   3.5         42    4.2   0.4    3.1  3  YcbB            YcbB domain


Domain annotation for each model (and alignments):
>> WhiA_N  WhiA N-terminal LAGLIDADG-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   2.7e-31   9.9e-28       1      86 []      19     104 ..      19     104 .. 0.99

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 2.7e-31
      WhiA_N   1 eccrkaeLaAllrmnGslslvngklvlevqtenaaiARriykllkelYgieaellvrkknklkknnvYivrvkegveellkelgll 86 
                 +ccr+ae+aAllr++G+l++v+g++v+e++++++a+ARr+++ + e+Yg+ +e++v+ +++l+k +++ivrv +++e+l++++gll
  KIR60981.1  19 PCCRRAEMAALLRFAGGLHIVSGRVVVEAELDTGAVARRLRREIAEVYGYSSEIHVLASGGLRKGSHFIVRVVKDGEALARQTGLL 104
                 6***********************************************************************************96 PP

>> LAGLIDADG_WhiA  WhiA LAGLIDADG-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.0   3.7e-28   1.3e-24       3      93 .]     128     218 ..     126     218 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 3.7e-28
  LAGLIDADG_WhiA   3 aflrGaflasGsindpekkyhLEivspdeelaeqlqkllnefeleakilerrkkyvvylKkaeqIvdlLkiigahesllkfenirilrevr 93 
                     +++rGaf+a+Gs+++p ++ +LEi +p  e a +l +++++++++ak +e+r+  +v++K++++I+ lL+ igah+s+l++e++r++revr
      KIR60981.1 128 SAWRGAFMAHGSLTEPGRSSALEITCPGPESALALVGAARRIGITAKNREVRGVDRVVVKDGDAIAALLTRIGAHSSVLAWEERRVRREVR 218
                     68***************************************************************************************98 PP

>> HTH_WhiA  WhiA C-terminal HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   5.3e-22   1.9e-18       1      84 []     221     303 ..     221     303 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 5.3e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-GGGS-HHHHHHHHHHHH-TTS-HHHHHHTT..T--HHHHHHHHHHHHHHH CS
    HTH_WhiA   1 vnRlvNcetaNlkKtvkaaakqieaielieekkgleklpeklkevaelRlenpdaSLkeLgelleppisKSgvnhrlrklkela 84 
                 +nRl+N++ aNl+++++aa+   +++ +  e  + ++ p++l ++ +lRle+++aSL+eLg l++pp++K++++ r+r+l +la
  KIR60981.1 221 ANRLANFDDANLRRSARAAVAAAARVTRALEILA-DDAPNHLTSAGRLRLEHRQASLEELGALADPPLTKDAIAGRIRRLLALA 303
                 6******************************966.9********************************************8875 PP

>> DUF1697  Protein of unknown function (DUF1697)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.4e-05      0.12      39      80 ..      37      78 ..      36      83 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.4e-05
     DUF1697 39 yiqSGNvvfeseedaaeleakiekaleeefgfevpvlvrtae 80
                +i SG vv+e+e d+ +++++++++++e +g++ ++ v+ + 
  KIR60981.1 37 HIVSGRVVVEAELDTGAVARRLRREIAEVYGYSSEIHVLASG 78
                689********************************9998765 PP

>> YcbB  YcbB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.11     4e+02      60      78 ..      47      65 ..      39      84 .. 0.83
   2 ?    4.2   0.4     0.012        42      68      85 ..     210     227 ..     198     234 .. 0.88
   3 ?    2.4   0.0     0.042   1.5e+02      63      91 ..     288     316 ..     241     319 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.11
        YcbB 60 iekevkaieqRiRRaikka 78
                +e ++ a+ +R+RR i++ 
  KIR60981.1 47 AELDTGAVARRLRREIAEV 65
                56678899********875 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.012
        YcbB  68 eqRiRRaikkalknlAsl 85 
                 e+R+RR +  + + lA++
  KIR60981.1 210 ERRVRREVRATANRLANF 227
                 89*************985 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.042
        YcbB  63 evkaieqRiRRaikkalknlAslGledys 91 
                   +ai  RiRR ++ a k    lG+ d++
  KIR60981.1 288 TKDAIAGRIRRLLALADKRARDLGIPDTE 316
                 5679999********99999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2232.35
//
Query:       KIR60982.1  [L=334]
Description: glyceraldehyde-3-phosphate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-69  233.1   0.0    1.5e-69  232.6   0.0    1.2  1  Gp_dh_C       Glyceraldehyde 3-phosphate dehydrogenase, C-ter
    5.1e-38  129.5   0.1    1.5e-37  128.0   0.0    1.8  2  Gp_dh_N       Glyceraldehyde 3-phosphate dehydrogenase, NAD b
     0.0062   15.9   0.1      0.025   13.9   0.0    1.9  2  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
  ------ inclusion threshold ------
      0.023   15.5   0.0      0.058   14.2   0.0    1.7  1  GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fol


Domain annotation for each model (and alignments):
>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.6   0.0   3.3e-73   1.5e-69       1     158 []     158     313 ..     158     313 .. 0.99

  Alignments for each domain:
  == domain 1  score: 232.6 bits;  conditional E-value: 3.3e-73
                 HHHHHHHHHHHHEEEEEEEEEEEECTTTSBSSSS--.SSTTTTSBTTCSSEEEE-THHHHHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSTS-H CS
     Gp_dh_C   1 LaplakvlndkfgikkglmttvhaytndQkllDgpskkdlrraraaaeniiptstgaakavglVlpelkgkldglAvrVPtpnvsvvdlvvelekevtv 99 
                 Lap+akvl+d fgi kglmtt+hayt+dQ+l+D+p+ kdlrraraaa ni+ptstgaaka+glVlpelkgkldg+A+rVP+p++s++dl+ve+ +e++v
  KIR60982.1 158 LAPMAKVLHDTFGITKGLMTTIHAYTQDQNLQDAPH-KDLRRARAAALNIVPTSTGAAKAIGLVLPELKGKLDGYALRVPIPTGSATDLTVEVGRETSV 255
                 8********************************998.9************************************************************* PP

                 HHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGCEEETTTEEEEEEEE CS
     Gp_dh_C 100 eevnaalkeaaegalkgilsyteeelvssDlvgdphssifdaketivveenlvkvvawy 158
                 +evnaalk+aaeg+lkg+l y+e+++vs D+v+dp+s+ifda +t+v+  n+vkvv wy
  KIR60982.1 256 DEVNAALKAAAEGPLKGVLVYNEDPIVSADIVTDPASCIFDAPLTKVIG-NQVKVVGWY 313
                 ************************************************6.********9 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   0.0   3.3e-41   1.5e-37       1     100 [.       3     103 ..       3     104 .. 0.97
   2 ?   -1.8   0.0      0.89     4e+03      21      59 ..     125     165 ..     117     214 .. 0.55

  Alignments for each domain:
  == domain 1  score: 128.0 bits;  conditional E-value: 3.3e-41
                 CEEEEESTSHHHHHHHHHHHHHT.TCEEEEEE-TS-HHHHHHHHHEETTTEC-SS-EEEETTEEEETTEEEEEE--SSGGGS-CHHHTSSEEEE-SSS- CS
     Gp_dh_N   1 vkvainGfGRIGrlvlralleek.elevvaindltdletlayllkyDsvhgrfkgeveaeeealvvngkkikvlaekdpeelpwkelgvdlVvestGvf 98 
                 ++v+inGfGRIGr+++ra+l++  ++evva+ndltd++tla+llkyDs+ gr+++ev+a+ ++++v+gk+ik +ae+dp++l w+e+g+d+V+estG+f
  KIR60982.1   3 IRVGINGFGRIGRNFFRAVLASGaDIEVVAVNDLTDNATLAHLLKYDSILGRLPHEVKATADEITVGGKTIKAFAERDPAKLAWGEVGADVVIESTGFF 101
                 69******************5555*************************************************************************** PP

                 -S CS
     Gp_dh_N  99 td 100
                 td
  KIR60982.1 102 TD 103
                 97 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.89
                 HHTTCEEE.EEE-.TS-HHHHHHHHHEETTTEC-SS-EEEE CS
     Gp_dh_N  21 eekelevv.aind.ltdletlayllkyDsvhgrfkgeveae 59 
                 ++++++vv  +n+   d+++ + + +   +  ++    ++ 
  KIR60982.1 125 KNEDVTVVmGVNHdQYDPAKHTIISNASCTTNCLAPMAKVL 165
                 45554443156665566666555555544444444444444 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.7e-06     0.025      38      71 ..       4      39 ..       2      67 .. 0.72
   2 ?   -1.1   0.0      0.24   1.1e+03     124     161 ..     247     283 ..     242     295 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.7e-06
                  EEEEES-SHHHHHHHHHHHHTT-..EEEEESSSHHH CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlkafgm..kviaydrskkk 71
                  +vGi G+GrIG+++ + + a g+  +v+a++   ++
    KIR60982.1  4 RVGINGFGRIGRNFFRAVLASGAdiEVVAVNDLTDN 39
                  79************8877655551166666665443 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.24
                   EESS-GGGB-H.HHHHHHHHTTSCCEEEES--SSSSSGT CS
  2-Hacid_dh_C 124 iNtaRGglvde.eaLleaLksgkiagaalDvfeeeplpe 161
                   + ++R + vde +a l+a  +g ++g+   v++e p+ +
    KIR60982.1 247 VEVGRETSVDEvNAALKAAAEGPLKGVL--VYNEDPIVS 283
                   7799999999867889999999999988..777777764 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.3e-05     0.058       1      34 [.       3      36 ..       3      50 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
                  EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECS CS
  GFO_IDH_MocA  1 lrvaiiGaGkigskhlrplnesqrleevvalldp 34
                  +rv+i G+G+ig++++r++ +s  + evva+ d 
    KIR60982.1  3 IRVGINGFGRIGRNFFRAVLASGADIEVVAVNDL 36
                  69****************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2351.13
//
Query:       KIR60983.1  [L=399]
Description: phosphoglycerate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.9e-147  489.8   0.0   5.4e-147  489.7   0.0    1.0  1  PGK       Phosphoglycerate kinase


Domain annotation for each model (and alignments):
>> PGK  Phosphoglycerate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  489.7   0.0    3e-151  5.4e-147       6     378 .]      14     389 ..       6     389 .. 0.96

  Alignments for each domain:
  == domain 1  score: 489.7 bits;  conditional E-value: 3e-151
                 -TT-EEEEEE-----EECT.TEES--HHHHHHHHHHHHHHHTT-EEEEEE--S--TT.S-GGG-SHHHHHHHHHHHTT-EEEESSTTSHHHHHHHHT-T CS
         PGK   6 lkgkrvlvRvDfNvplkke.gkitddtriraalpTikyllekgakvvllsHlgrpkg.ekeklslkpvaerLsellgkeVkfvedvvgeeveeaiaelk 102
                 ++g+rvlvR+D+Nvpl+k+ g+itdd rira lpT+ +l  +gakvv++sHlgrpkg  ++++sl+pva+rL ellg +V+f+ed+vge++++++++l+
  KIR60983.1  14 VSGRRVLVRADLNVPLDKQtGAITDDGRIRAVLPTLTALTGAGAKVVVFSHLGRPKGaPDPQFSLRPVAARLGELLGAQVRFAEDTVGESARSTVDALA 112
                 899*************9999*************************************667*************************************** PP

                 TT-EEEES-GGGSTTTTTT-H....HHHHHHHHT-SEEEE--GGGTTS--TTTTHHHHCSEEEE-HHHHHHHHHHHHHHHS--SSEEEEEEES-HHHCH CS
         PGK 103 egevllLeNvrfykeEeknde....elakklasladvyVnDAFgtahrahaStvgiakvlsaaaGllmekElealskvlenperplvailGGakvsdki 197
                 +gev lLeN+rf+k+E+++de    ++a++la+l+++yV DAFg++hr+haS+ +++  l+++aG+l+ +E+e+l+k++ +perp+v++lGG+kvsdk+
  KIR60983.1 113 DGEVALLENLRFNKGETSKDEaergAFADQLAALGEAYVDDAFGAVHRKHASVFDVPARLPHVAGRLVLREVEVLAKLTGEPERPYVVVLGGSKVSDKL 211
                 ****************9999976666**********************************99************************************* PP

                 HHHHHHTTT-SEEEEETCHHHHHHHHTT-B-TTSS--GGGHHHHHHHHHHHHHHT-EEE--SEEEEESSSSTTS..EEEECCG--TT-EEEEE-HHHHH CS
         PGK 198 kvienLlekvdkliigGgmantFlkaqgleigkslveedklelakellekakkkgvkillpvDvvvakeeaeke.akvveveaipedemalDigpktie 295
                 +vie+Ll kvd+l+igGgm++tFlkaqg+e+g+sl+ee+++e++++lle+a     killpvDvv a++ a ++ + +v+++aip++  +lDigp+t++
  KIR60983.1 212 AVIEALLPKVDRLLIGGGMCFTFLKAQGHEVGTSLLEEEMVETCRNLLERAG---GKILLPVDVVAADAFAPDAaHDTVRADAIPSHRLGLDIGPETVA 307
                 **************************************************96...99**********9854444478999******************* PP

                 HHHHHHCC-SEEEEES-SS-TTSGCCCHHHHHHHHHHHHHCHTSEEEEESHHHHHHHHHTT-GG.GSSEEESSSHHHHHHHCTS CS
         PGK 296 lfaeaikeaktvvwnGpmGvfeiekfakGTkaiakalaeatkgalsivGGgdsaaaveklglad.kvshvStGGgAsLelLegk 378
                  fa+a+++akt++wnGpmGvfe+++fa+GT+ +a+a+++a  +a+s+vGGgdsaaav++lgl++ ++ h+StGGgAsLe+Legk
  KIR60983.1 308 GFAAALADAKTIFWNGPMGVFEMAAFANGTQGVAEAITKA--DAFSVVGGGDSAAAVRALGLDEsSFGHISTGGGASLEYLEGK 389
                 ***************************************8..57******************8879*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2629.94
//
Query:       KIR60984.1  [L=263]
Description: triosephosphate isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-89  298.2   0.0    4.3e-89  298.1   0.0    1.0  1  TIM       Triosephosphate isomerase


Domain annotation for each model (and alignments):
>> TIM  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.1   0.0   2.4e-93   4.3e-89       2     243 .]       9     255 ..       8     255 .. 0.97

  Alignments for each domain:
  == domain 1  score: 298.1 bits;  conditional E-value: 2.4e-93
                 EEEEE-TBTS-HHHHHHHHHHHHHHCHG...CTSEEEEE--GGGHHHHHHHHTTSSEC..EEES--BSSSSBS-TT--BHHHHHHTT-SEEEES-HHHH CS
         TIM   2 liagNwKmnktleeakellkklkaklke...ekvevviappflylekvkklleesklk..lgaqnvsaeksGafTGevsaemlkdlgvkyviiGHsErr 95 
                 l+agNwKmn ++ ea+ l++kl+a+l+    ++ve+v++ppf+ l++v++++e++kl   +g q++s   sGa+TG++s +ml++lg++yv++GHsErr
  KIR60984.1   9 LMAGNWKMNLNHLEANLLVQKLAASLTAqqlTDVECVVLPPFTDLRTVQTAIEGDKLLigYGGQDLSPYPSGAYTGDISGAMLAKLGCTYVVVGHSERR 107
                 689******************777766657999**********************9987789************************************* PP

                 HHST--HHHHHHHHHHHHHTT-EEEEEE---HHHHHTT.HHHHHHHHHHHHTTTS-CCCGGCEEEEE--GGGSSSS----HHHHHHHHHHHHHHHHHHS CS
         TIM  96 qlfkEtdelvakKvkaalksglkpilCvGEtleereagkteevvkeqlkeilkkldeealknvviAYePvWAiGtgktatpeqaqevhaairkelaekv 194
                 q+++E+d+lv++Kv aal++gl+pilC+GE le re+ ++   + +ql+ +l++l+ e++++vv+AYePvWAiGtgktatpe+aqev+ ++rk l e++
  KIR60984.1 108 QYHHEDDALVNDKVTAALSHGLTPILCIGEGLEVREQLRHVPHCCDQLDGALRGLTPEQVTKVVVAYEPVWAIGTGKTATPEDAQEVCGEVRKRLVETY 206
                 *************************************************************************************************** PP

                 THHHHTTSEEEEESS--TTTHHHHHTSTT--EEEESGGGCSHHHHHHHH CS
         TIM 195 skevaekirilYGGsvnkenakellkqkdidGlLvGgaslkaesFlkii 243
                 ++ +a+++rilYGGsv+++n++++++q+d+dG+LvGgasl+ae+F+ki+
  KIR60984.1 207 DQATADQVRILYGGSVKSSNVASIMAQPDVDGALVGGASLDAEEFAKIC 255
                 ***********************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2041.15
//
Query:       KIR60985.1  [L=88]
Description: preprotein translocase subunit SecG [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-19   69.1   6.6    3.2e-19   68.8   6.6    1.1  1  SecG         Preprotein translocase SecG subunit
  ------ inclusion threshold ------
       0.15   11.4   0.2       0.18   11.3   0.2    1.1  1  Urocanase_C  Urocanase C-terminal domain
        1.7    8.8   3.7         25    5.1   0.0    2.0  2  MPS-4        MinK-related peptide, potassium channel accessor


Domain annotation for each model (and alignments):
>> SecG  Preprotein translocase SecG subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   6.6   5.3e-23   3.2e-19       2      69 ..       9      76 ..       8      77 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 5.3e-23
                HHHHHHHHHHHHHHHHHHCHHCCSCCHHTT....SS-SS--SSCCCHHCCHHHHHHHHHHHHHHHHHHC CS
        SecG  2 llillvivsilLillvLlQsgkgaglsgafggg.asdslfgsrgaekfLtkiTvilavlFfvlslvlal 69
                l++ll i+si+L++l+Ll++gkg+g+s++fggg +s sl gs+ aek+L++ Tv +++++f++++ l+l
  KIR60985.1  9 LIVLLTITSIMLTMLILLHRGKGGGMSSMFGGGvSS-SLAGSSVAEKNLDRYTVLVGIVWFACIVGLGL 76
                89****************************888555.699***************************97 PP

>> Urocanase_C  Urocanase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2     3e-05      0.18     128     169 ..      17      58 ..       6      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3e-05
                  HHHT-SEEEEEESTTT-TTS-EEEEEEEEE-SSHHHHHHHHH CS
  Urocanase_C 128 aargatwvslhnGGgvgiGesinagfvvvldGteeaeerler 169
                  ++  + ++ lh G g g+ ++  +g+   l G++ ae++l+r
   KIR60985.1  17 SIMLTMLILLHRGKGGGMSSMFGGGVSSSLAGSSVAEKNLDR 58 
                  455567899****************************99987 PP

>> MPS-4  MinK-related peptide, potassium channel accessory sub-unit protein 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   1.9     0.012        71      41      62 ..       4      25 ..       2      28 .. 0.88
   2 ?    5.1   0.0    0.0042        25      29      67 ..      43      81 ..      41      86 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.012
       MPS-4 41 yfdfllvviisvvslglvylll 62
                +f + l+v++++ s+ l  l+l
  KIR60985.1  4 WFAYTLIVLLTITSIMLTMLIL 25
                69999********999999987 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0042
       MPS-4 29 ssscnrisystkyfdfllvviisvvslglvylllwievl 67
                sss    s + k +d   v++  v + ++v l lw+ + 
  KIR60985.1 43 SSSLAGSSVAEKNLDRYTVLVGIVWFACIVGLGLWLRLQ 81
                788888899999999999999999999********8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 659.23
//
Query:       KIR60986.1  [L=114]
Description: electron transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-35  121.4   0.0    2.4e-35  121.3   0.0    1.0  1  RbpA      RNA polymerase-binding protein


Domain annotation for each model (and alignments):
>> RbpA  RNA polymerase-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.3   0.0   1.4e-39   2.4e-35       2     104 .]       6     108 ..       5     108 .. 0.99

  Alignments for each domain:
  == domain 1  score: 121.3 bits;  conditional E-value: 1.4e-39
        RbpA   2 alrGsrlGaksleedervelaprqevsYacakghetevtfaaeaevPetwecrrcGkeakldgeepeeekkekpyrtHldmlkERRseeeleelLaerL 100
                 ++rG+r+G+++ +  er+ +apr+ vsY+c+++h+++v++aa+a  P+ w+c+rcG++a++d ++p+ +++ +py+tHl+++kERR+ e++e+lLae+L
  KIR60986.1   6 VIRGTRVGSGPERFGERHVPAPRRPVSYWCRNDHRVDVPIAADAAPPTLWDCPRCGLPAGQDPADPPGRARPEPYKTHLAYVKERRTPEQGEALLAEAL 104
                 79************************************************************************************************* PP

        RbpA 101 ellr 104
                 ++lr
  KIR60986.1 105 AALR 108
                 **98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 935.39
//
Query:       KIR60987.1  [L=256]
Description: 6-phosphogluconolactonase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-73  246.2   0.5    4.1e-73  246.0   0.5    1.0  1  Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phospho


Domain annotation for each model (and alignments):
>> Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.0   0.5   2.3e-77   4.1e-73       2     225 .]      11     238 ..      10     238 .. 0.95

  Alignments for each domain:
  == domain 1  score: 246.0 bits;  conditional E-value: 2.3e-77
                      SHHHHHHHHHHHHHHHHHHHHHHHS-EEEEE--SHCHHHHHHHHHCSG.GGGGS-GGGEEEEESEEESS-TTSTT-HHHHHHHHTGGGS---GG CS
  Glucosamine_iso   2 dkeelaealaarivealeealaergraslalsGGstpkalyealaeeeeaaaaldwskvhvflgDERfVpaddpdsNaklareallskvkipea 95 
                      d++ la+a+aar+v +l +a+aerg+as++l+GG+++ a+y+a+a+ +++  a+dws+v+v++gDERf+pa+dp++N+++ar all+ +++++a
       KIR60987.1  11 DADLLAQAVAARLVVRLLDAQAERGQASMVLTGGRIAAAVYRAVAALPARD-AVDWSRVDVWWGDERFLPAGDPERNETQARAALLDTLPLDPA 103
                      7899*****************************************877544.9***************************************** PP

                      GEE-S-TTSST...HHHHHHHHHHHHHHHHCC...SSSSSESEEEE---TTS-BTTB-TTCHHHHCSSSSEEEESSBSTSSS-EEEE-HHHHTT CS
  Glucosamine_iso  96 nvhpikesaae...apeaaaaayeeelkella...kelpvfDlvlLGmGpDGHtaSLFPgspeleetdrlvvavedspkpppeRitlTlpvlns 183
                      +vhp+++s+     +pea aaay++el++++     +lp+fD+++LG+G+DGH+aS FP++p  ++++r v av+ spkppp R tlTlp++n+
       KIR60987.1 104 RVHPMPASDGPtgdDPEAGAAAYADELARAARpghAALPHFDVLMLGVGEDGHVASVFPEHPV-HHDTRPVSAVRGSPKPPPVRTTLTLPTINT 196
                      *****95443367789************988899999*************************8.9999************************** PP

                      CSEEEEEEESHHHHHHHHHHHTT..TTTSGGGGH--SSEEEE CS
  Glucosamine_iso 184 arevlflvaGeeKaealeevlsgedpeelPaalvegqgellw 225
                      a+ev+++++G++Ka a+  +l+g+ p +lPaa v+g +++lw
       KIR60987.1 197 AEEVWLVASGADKARAVGMALAGAGPVQLPAAGVQGVSRTLW 238
                      ***********************************9999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1845.96
//
Query:       KIR60988.1  [L=338]
Description: glucose-6-phosphate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-77  257.9   6.8    1.2e-76  257.5   6.8    1.1  1  OpcA_G6PD_assem  Glucose-6-phosphate dehydrogenase subunit


Domain annotation for each model (and alignments):
>> OpcA_G6PD_assem  Glucose-6-phosphate dehydrogenase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.5   6.8   6.9e-81   1.2e-76       3     254 .]      52     295 ..      50     295 .. 0.97

  Alignments for each domain:
  == domain 1  score: 257.5 bits;  conditional E-value: 6.9e-81
  OpcA_G6PD_assem   3 easrehPcRvivlvtddseeedsrldaevraggdagcgEvivlrlygealrhlasvvlpLllpDlpvvvwWpasappnpaedllgrlaeladrr 96 
                       a++ hPcR++v+v++d e++ +rldae+ +gg++g +E +v r+yg+++ h++svv+pLl+pD+pvv+wW++++p++ a+d lg +a   drr
       KIR60988.1  52 IAAAAHPCRLLVVVRSDVERDRNRLDAEIVVGGRLGPCEAVVTRMYGRLALHAESVVMPLLVPDVPVVTWWHGEPPAEIATDFLGVVA---DRR 142
                      5899************************************************************************************...*** PP

  OpcA_G6PD_assem  97 ItDslssedpeaalerlrssyapgdsDLaWtRltpWRellAsafDqerrppleeitsvtiegekeppsalllagWLasrLgwpvtreetegdkg 190
                      ItDs++++dp aal++++++yapgd+DLaWtR+tpWR+l+A afD+    + +++t++++ +++ +p+a l++gWL+srLg++ + e   + ++
       KIR60988.1 143 ITDSAQADDPIAALRQRARDYAPGDTDLAWTRITPWRTLVAGAFDT---TE-ARVTQARVVAPPTDPTAALMCGWLNSRLGIAPRWEPAPEAPR 232
                      **********************************************...66.89****************************88899998999* PP

  OpcA_G6PD_assem 191 vtsvtleredgdeielelpdaetatisrpgqieqvvalprrsledllaeeLrrldpdelYeeaL 254
                      +++v+l  ++gde++l++ d++ at +r+gq ++ ++l+rr l+d laeeLrrld d++Y+eaL
       KIR60988.1 233 MREVQLSCANGDELTLSR-DDSVATFRRTGQDDRQLPLTRRPLGDELAEELRRLDADQVYAEAL 295
                      ******************.7789****************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2522.72
//
Query:       KIR60989.1  [L=504]
Description: glucose-6-phosphate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.5e-116  386.4   0.0     9e-116  386.1   0.0    1.1  1  G6PD_C    Glucose-6-phosphate dehydrogenase, C-terminal domai
    3.2e-57  194.0   0.0    4.3e-57  193.6   0.0    1.2  1  G6PD_N    Glucose-6-phosphate dehydrogenase, NAD binding doma
  ------ inclusion threshold ------
      0.035   14.1   0.1        2.2    8.3   0.0    2.4  2  U62_UL91  Functional domain of U62 and UL91 proteins


Domain annotation for each model (and alignments):
>> G6PD_C  Glucose-6-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  386.1   0.0  1.5e-119    9e-116       1     290 []     208     502 ..     208     502 .. 0.97

  Alignments for each domain:
  == domain 1  score: 386.1 bits;  conditional E-value: 1.5e-119
                 HHHHHS-STTSTTSSTTTEEEEEEEEEESS--TTTHHHHTTTHHHHHTTTTHHHHHHHHHH----SSSSHHHHHHHHHHHHTTB----G...GG.EEEE CS
      G6PD_C   1 lvlRfaNalfeplwnrnyidhvqitvketlgvegrggYydeaGalrDvvqnHllqllalvamepPasldaedirdekvkvLkslrplkleevekkvvrG 99 
                 l+lRfaN+lfeplwn++y+d+vqit++e++g+++r+g+yd++G  rDv+qnHllqllalvame+P+s+da++ir+ek+kvLk+++  k   v++ +vrG
  KIR60989.1 208 LALRFANSLFEPLWNSKYVDSVQITMAEDVGIGSRAGFYDSVGTARDVLQNHLLQLLALVAMEEPTSFDADEIRAEKLKVLKAITLPKD--VSRGTVRG 304
                 68***********************************************************************************9976..9999**** PP

                 EE.....E--TGS-STTSTTS-TT----SEEEEEEEB-STTTTT-EEEEEEESSBSS-EEEEEEEE---SS-SS---......--EEEEEEESS-EEEE CS
      G6PD_C 100 qYaagavkgkevkgYreeegvakdSkteTfvalkleidnerwagVPfylrtGKrLnekkteiriqfkkvpsdlfkkke.....rneLviriqpdeaisl 193
                 qY  g+v g++  gY++e+gv++dS+teT+va++l i+n+rwagVPfy+r+GKrL++++te++i fkk+p+  f+ ++     +n+Lvir+qpde++ l
  KIR60989.1 305 QYLPGWVGGQRAVGYLDEDGVPADSTTETYVAVELGIQNRRWAGVPFYIRAGKRLPRRVTEVAIMFKKAPHLPFNPADmeslgPNQLVIRVQPDEGVVL 403
                 **************************************************************************43335789***************** PP

                 EEEEE-SSSE.....EEEEEEHHHHTT..---HHHHHHHHHHHT-GTTSB-HHHHHHHHHHHHHHHHHHHH---EEEETTSSS-HHHHHHHHHHTX.X. CS
      G6PD_C 194 klnakkpgleleleeveldlsykerfk..lpeaYerLlldvlkgdqtlFvrsdeveaaWkivdpileaweeeklekYeagsrgPeeadellekdgrkwr 290
                 k+ +k+pg+++e++++ +d++y e+f+  +peaYerL+ldvl gd+tlF  + eve++W++vdp+ +awe +k+e+Y++g +gP++ade+l+++gr+wr
  KIR60989.1 404 KFGSKVPGTTMEVRDIAMDFQYGEAFTesSPEAYERLVLDVLIGDRTLFPDAAEVEQSWAVVDPLEHAWEGTKPEPYRSGEWGPRAADEMLAREGRAWR 502
                 **************************999****************************************8899*************************6 PP

>> G6PD_N  Glucose-6-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.6   0.0   7.2e-61   4.3e-57       1     177 []      22     206 ..      22     206 .. 0.96

  Alignments for each domain:
  == domain 1  score: 193.6 bits;  conditional E-value: 7.2e-61
      G6PD_N   1 vifGasGdLakrkllPaLyelaregllpeevrivgvarsklsdeefrekvkealkkekekeeldeekleeflkrleyvsgdleeeeeyekLkekleele 99 
                 vifG++GdLa++kllPa+y+la++gllp+ + ++g+ar+++ d +f++ +++a k e++++ ++ee++ +++ ++++v g+++++++++kL+++l++l+
  KIR60989.1  22 VIFGVTGDLARKKLLPAVYDLANRGLLPPGFVVLGFARRDWCDGDFESLAHDAAK-EHARTPWREEVWGRLAGNIKFVGGSFDDDAAFDKLAQTLNDLR 119
                 8***************************************************985.666788**********************************988 PP

      G6PD_N 100 a......nrlfYlavppslfeevaeklkkaglake...eewkrvvvEKPfGkdlesarelneelkkvfkeeqiyrIDhYLGketvqN 177
                 +      n +fY+++pp++f  v ++l+++g+a++    +w+rvvvEKPfG+dl sa+eln+ +++vf+ ++++rIDhYLGketvqN
  KIR60989.1 120 DshgihgNAAFYFSIPPAAFPVVLKQLARTGMADNekcGGWRRVVVEKPFGHDLPSAKELNDLVDDVFTRQDVFRIDHYLGKETVQN 206
                 4455666*************************99888999**********************************************9 PP

>> U62_UL91  Functional domain of U62 and UL91 proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.017     1e+02       6      24 ..     177     195 ..     175     204 .. 0.87
   2 ?    8.3   0.0   0.00037       2.2      34      54 ..     351     371 ..     321     376 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.017
    U62_UL91   6 aelkddfeacetkeDlFki 24 
                  el+d+     t++D+F+i
  KIR60989.1 177 KELNDLVDDVFTRQDVFRI 195
                 599**************97 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00037
    U62_UL91  34 FlveqvEslPRRvdsaAilFd 54 
                 F + +   lPRRv  +Ai+F 
  KIR60989.1 351 FYIRAGKRLPRRVTEVAIMFK 371
                 77888899************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3489.84
//
Query:       KIR60990.1  [L=392]
Description: transaldolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-80  270.9   0.0    1.4e-80  270.7   0.0    1.0  1  TAL_FSA   Transaldolase/Fructose-6-phosphate aldolase


Domain annotation for each model (and alignments):
>> TAL_FSA  Transaldolase/Fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.7   0.0   7.7e-85   1.4e-80       1     285 [.      15     358 ..      15     360 .. 0.97

  Alignments for each domain:
  == domain 1  score: 270.7 bits;  conditional E-value: 7.7e-85
                 EEEE---HHHHH.....HHHHTT---EEE--HHHHHH..TTS.-HHHHHHHHHHH................................H-S-EEEE-S-. CS
     TAL_FSA   1 lvlDtadrelik.....klleekgiqgvTtNPsliekaikykalydeaieeikkegkkvkeaydkLavedilealdll........gadgrvslEVdar 86 
                 ++lD ++r +++     +l +e+++ gvTtNP++++ka++ ++ yd ++++++ +g +v+ea++ L++ d++ a+d++        g+dgrvs+EVd+r
  KIR60990.1  15 VWLDDLSRVRLSsggldQLRREQHVAGVTTNPTIFAKALADADTYDGQLRDLATRGVEVEEAVRMLTTYDVRWACDVMrpsydgsqGVDGRVSIEVDPR 113
                 79************************************************************************************************* PP

                 ..-SHHHHHHHHHHHHTT-T..TEEEEEESSHHHHHHHHHHHHTT--EEEEEE-SHHHHHHHHHH.................T-SEEEEBHHHHHTTT. CS
     TAL_FSA  87 lsddteatieeArrlialyerenvlIKiPateeGikAikeLkkeGinvnvTliFsleqalaaaea.................gasviSpFvgRiddll. 167
                 l+++te+t++eA+ l+ l++r+n++IKiPate+G++Ai +  +eGi+vnvTliF l+++ +++ea                   sv+S+Fv+R+d ++ 
  KIR60990.1 114 LAHETEKTVAEAKALWWLVDRPNLFIKIPATEAGLPAITATLAEGISVNVTLIFGLDRYSQVMEAflagleqakanghdlskIGSVASFFVSRVDSEVd 212
                 **************************************************************************9988877559**************8 PP

                 .................S-HHHHHHHHHHHHHHH.T..................-.S-EEEEBS--SHHHHHHHHT-SEE.EE-HHHHHHHT--HHH.. CS
     TAL_FSA 168 kkleek.....dklkgkddgvalvkeiynyykkl.g..................y.sTkvmaasfrnveeveelagcdtv.Tippkllealakhgkts. 239
                 k+le+      ++l+gk ++va+++ +y++y ++ +                  + sT+++++++r+v +veel+++ tv T+p+++++a+a+hg+t+ 
  KIR60990.1 213 KRLEKLgsdeaKALRGK-AAVANAQLAYERYSEVfSsdrwraladagahpqrplWaSTSTKNPDYRDVIYVEELIAPGTVnTMPESVIHAYADHGETRg 310
                 8888889*9999999*9.****************889*****************99*****************************************99 PP

                 ................................HHHHHHHHHHHHHHHH CS
     TAL_FSA 240 eklee..eeieklleklfrlginedavaeelldegikkFakdleklla 285
                 ++++   +++++++++l+++g+++ +v + l++eg++kF++++++ll+
  KIR60990.1 311 DTVTGayDAARQVFTDLESVGVDMSDVIAVLEREGVEKFEASWQELLD 358
                 999999999999*********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2673.34
//
Query:       KIR60991.1  [L=712]
Description: transketolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     4e-130  433.7   0.0   6.1e-130  433.1   0.0    1.3  1  Transketolase_N  Transketolase, thiamine diphosphate binding 
    1.1e-47  162.1   0.0      2e-47  161.2   0.0    1.5  1  Transket_pyr     Transketolase, pyrimidine binding domain
    1.8e-10   40.8   0.0    3.5e-10   39.8   0.0    1.5  1  Transketolase_C  Transketolase, C-terminal domain
     0.0002   20.7   0.0    0.00035   19.9   0.0    1.3  1  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.1   0.0  1.3e-133  6.1e-130       2     334 .]      17     362 ..      16     362 .. 0.95

  Alignments for each domain:
  == domain 1  score: 433.1 bits;  conditional E-value: 1.3e-133
                      HHHHHHHHHHHHHHHHHHHT-S--HHHHHHHHHHHHHHHHT--B-TTBTT-TTS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTTSTT-SS CS
  Transketolase_N   2 dkkavnaiRvLavDavekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLsnGhaslllYsllhLtGydlsledlksfrqlgskt 95 
                      d++av+ +RvLa+Davek ++GhPG++++la++a+ lf+++++hnP+dp+w +RDRfvLs+Gh+sl+lY++l+L Gy l l+dlks+rq+gs t
       KIR60991.1  17 DRRAVDLVRVLAMDAVEKSGNGHPGTAMSLAPAAYLLFNRVMRHNPADPNWPGRDRFVLSAGHSSLTLYIQLFLAGYPLALDDLKSLRQWGSLT 110
                      6799****************************************************************************************** PP

                      -SS--TTTSTT--S---STTHHHHHHHHHHHH...HHHHHHHH-BTTB-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEE CS
  Transketolase_N  96 pGhPelghtagvevttGPLGqGianavglala...ektlaatynkpgfdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkis 186
                      pGhPe ght+gve+ttGPLGqG+ navg+a+a   e+ l++   +pg++++dh +++i++Dg+++eG+++eas lag+++Lg+L v+yDdn+is
       KIR60991.1 111 PGHPEHGHTPGVETTTGPLGQGLGNAVGMAMAarrERGLFDPETEPGASVFDHDVWCIASDGDIEEGITHEASALAGHQQLGNLCVIYDDNEIS 204
                      *****************************99844457899999*************************************************** PP

                      TTEEGGGT--S-HHHHHHHTT-EEEEE..TTT........T-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTSTTTTTSGGGTSS---HHHHHH CS
  Transketolase_N 187 idGeteisftedvakrfeaygWhviev..edg........edveaikaaieeakaekdkPsliklrtviGygspakagtedvhGapLgedevaa 270
                      i+ +t i+ +edva+r+eaygWhv++v  ++g        edvea+++a+ +akae+ +Ps+i+lrt+iG+++p+k++t ++hG++Lg+ evaa
       KIR60991.1 205 IEDDTRIAKSEDVAARYEAYGWHVQTVdwRAGdadqgdyhEDVEALHRALLAAKAETGRPSFIALRTIIGWPAPNKKNTGKIHGSALGASEVAA 298
                      ************************9874422212223333799*************************************************** PP

                      HHHHTTS-TT-TS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT--- CS
  Transketolase_N 271 lkkklGfdpeksfevpeevydaykekvaegakaeeeWeekfaaykkkapeeaaelerrlsgelP 334
                      +k+ lGfdp++sf+v e+v  + ++  ++ga+a++eWe+ ++ ++k+ pe++a  +r+ +  lP
       KIR60991.1 299 TKELLGFDPAQSFQVDEDVLGQARRVLERGAAAQQEWERAYEGWAKANPERKALWDRMSQRALP 362
                      *****************************************************99999888777 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.2   0.0   4.4e-51     2e-47       2     176 ..     378     558 ..     377     559 .. 0.98

  Alignments for each domain:
  == domain 1  score: 161.2 bits;  conditional E-value: 4.4e-51
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT............TEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHG CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg............egrvidsgisEqavlgfavGaalagpllviveaqFgdFan 86 
                   ++a+r+a++++l++l+   pe+++++aD+a+++++++kg   + +             gr +++gi+E+a+ ++ +G+al+g+ +++++++F++F++
    KIR60991.1 378 GVATRAASGKVLEALAPVLPELWGGSADLAESNNTTMKGEPSFVPavhatkdfpgheYGRTLHFGIREHAMGAILNGIALHGG-TRPYGGTFLVFSD 473
                   689**************************************99999************************************6.************* PP

                   GGHHGGHHHHHCHHHHHT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  87 gAqiyadqairsgeakgklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                       y+++ +r ++a++kl+v  v+t+++ig+gedGp+hq++e++  lr+ipgl vvrP+d++et+ ++r+a+++  ++P++l+l++++l+
    KIR60991.1 474 ----YMRPSVR-LAALMKLPVVyVWTHDSIGLGEDGPTHQPVEHLTALRAIPGLDVVRPADANETAWAWRQALEHT-DRPTALALSRQALP 558
                   ....*******.**************************************************************65.69*********997 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   7.8e-14   3.5e-10       6     124 .]     582     691 ..     576     691 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 7.8e-14
                      EETTSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSSEEEEE CS
  Transketolase_C   6 lregkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdgldapvkrv 99 
                       + +++v+++++Gs+v+ +l A e+Le++g  ++Vv++++ + + +++ +     +++ v+      r+++++ +a  +       +    ++v
       KIR60991.1 582 SNGKPQVIIIGTGSEVQLCLTARERLEADGTPTRVVSMPCQEWFYEQDEA-----YRESVLPRGVKARVSVEAGIAMSWRG----IVGDSGESV 666
                      55689*********************************************.....**************************....455555666 PP

                      EE-SSSSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C 100 ggpdviepgsaeelekafgldaeki 124
                       + + + +++ + l + fg+++++i
       KIR60991.1 667 SIEHYGASAPHTVLFEQFGFTPDRI 691
                      6666699***************998 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   7.9e-08   0.00035      62     177 ..      71     207 ..      67     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 7.9e-08
  DXP_synthase_N  62 DklvwDvgHqa...YvhKiltgRk...dkfktlrqkgGls.gfpkrsEseyDafeagHsstsisaalGlavardlkge.............kkkv 136
                     D++v   gH +   Y+   l+g     d++k+lrq g l+ g+p++   +    ++g  +  +  a+G+a+a++ +               +++v
      KIR60991.1  71 DRFVLSAGHSSltlYIQLFLAGYPlalDDLKSLRQWGSLTpGHPEHGHTPGVETTTGPLGQGLGNAVGMAMAARRERGlfdpetepgasvfDHDV 165
                     6666666665433456666666532226788899999987588888889988999999999**********977766557788888888888*** PP

  DXP_synthase_N 137 vaviGDgaltgGmafealnnigelk.kkllvilNdNemsisk 177
                      ++  Dg +  G+++ea   +g+++  +l vi+ dNe si++
      KIR60991.1 166 WCIASDGDIEEGITHEASALAGHQQlGNLCVIYDDNEISIED 207
                     *********************9987369***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 4698.07
//
Query:       KIR60992.1  [L=319]
Description: protoheme IX farnesyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-64  215.1  27.6    1.2e-63  214.8  27.6    1.1  1  UbiA      UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.8  27.6   6.7e-68   1.2e-63       1     251 [.      51     302 ..      51     303 .. 0.94

  Alignments for each domain:
  == domain 1  score: 214.8 bits;  conditional E-value: 6.7e-68
        UbiA   1 llipalvglalaaggspdlllllllllgtllaaaaanalNdyfDreiDadmertpnRPlvsGrispkealifaivllilgllllalllnpltallglla 99 
                 ll++++ +++la+gg p+l+l++++l+g+ laa+aa +lN+y+Dr+iD++m+rt++RPl+++ +sp++al+f++vl+++++ l+a+++n+l+a+l+l+a
  KIR60992.1  51 LLVTTVPAMMLAEGGLPSLWLMAVVLVGGSLAAGAASVLNCYIDRDIDQLMRRTKRRPLPTHTVSPRNALVFGLVLAVVSVTLMAVFTNLLAAGLTLAA 149
                 589************************************************************************************************ PP

        UbiA 100 llly.vvYtglrlKrrtllgtvvggiafglppllgwaavtgslsllalllalavflltwaialandlrdregDrkagiktlpvvlGrkaaril...lal 194
                 ++ y +vYt l+lKr+t+++t++gg++++ p+l+gwaavtgsl ++a++l++ vf++++++++  +++ + ++++agi++lpvv+ ++++      +a+
  KIR60992.1 150 IAYYdLVYT-LWLKRTTPQNTFWGGACGAAPVLIGWAAVTGSLAPAAWALFAVVFFWQMPHFYPLAMKYKADYARAGIPMLPVVASARRVNAEiigFAW 247
                 *********.9**************************************************************************88877777434444 PP

        UbiA 195 llavlllallllllalllllylllalllaalallraarlvrrrdakkaakff.lflss 251
                 l+++     l++++++++ +y + all+++++++ a+rl+r+  +  a + + lf++s
  KIR60992.1 248 LTLLS---SLAVWPLGMSAIYGVTALLSGGVFVYEAHRLCRQVARGGAVRPMrLFHWS 302
                 44444...466*******************************9999999999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.20s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2357.34
//
Query:       KIR60993.1  [L=111]
Description: hypothetical protein TK50_24675 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19   11.6   0.0       0.24   11.3   0.0    1.2  1  FAD_syn   FAD synthetase


Domain annotation for each model (and alignments):
>> FAD_syn  FAD synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.3e-05      0.24     102     150 ..      44      91 ..      23      98 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.3e-05
     FAD_syn 102 lveklkvkavvvGfdfrfGkkregdvellkelgaklgfevevvpkvele 150
                 +  k +++ v+vG d + G + ++d+   +e++ak g++ve + + el 
  KIR60993.1  44 VG-KRGARIVLVGSDGAWGDQFADDTVVAREACAKAGVTVENAWERELM 91 
                 44.7799*********************************998777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 874.90
//
Query:       KIR60994.1  [L=316]
Description: cytochrome B561 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-26   91.1  25.2      2e-20   73.2  16.6    3.0  2  COX15-CtaA  Cytochrome oxidase assembly protein
  ------ inclusion threshold ------
       0.18   11.5   0.2       0.32   10.7   0.2    1.4  1  DUF2934     Protein of unknown function (DUF2934)


Domain annotation for each model (and alignments):
>> COX15-CtaA  Cytochrome oxidase assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2  16.6   2.2e-24     2e-20       1     209 [.      15     190 ..      15     195 .. 0.94
   2 !   17.8   1.3   1.5e-07    0.0013     259     323 ..     220     284 ..     205     309 .. 0.59

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 2.2e-24
  COX15-CtaA   1 arwlllvlllvllvvvlGgltRltdsGlsitdWppctGalppltdeeweaefekyketpeykklagmtlaefkaiawiEwiHRllgrllGllilvplly 99 
                 +r++l++++  +++vv Gg++Rlt sGl+++ Wp ct+a              +y +tp           e     +iE+ +Rll  ++Gl+ l++++ 
  KIR60994.1  15 RRLALASIIANVAIVVTGGAVRLTASGLGCPTWPRCTDA--------------SYTTTP-----------EMGVHGVIEFGNRLLTFAVGLIALAVVVG 88 
                 578999*******************************99..............566666...........567899*********************** PP

  COX15-CtaA 100 flakkrisrelkkllllllllvglQGllGwwmVksgLsekprvspyrlaaHLllaflllalllwlalrllakeaesaeeeaaakklrllallllallll 198
                 +l ++  +rel +l++++l+ + lQ+++G ++V  +L      +p ++ +H+l++++++a+ ++l+ r+ +++   +   + +  lr+lal+++++ ++
  KIR60994.1  89 VLLHGARRRELLPLAVAVLFGIPLQAVIGGITVLTNL------NPWVVGLHFLASMVVIAAAYALWRRVGEPD--GPVVPTVPGPLRALALVTTVVSAA 179
                 *************************************......*************************99994..4578889999************** PP

  COX15-CtaA 199 qialGalvagl 209
                  +++G++v g+
  KIR60994.1 180 VLVIGTWVTGS 190
                 ********985 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.5e-07
  COX15-CtaA 259 llvllllailllrkarspklarlavllaallllQvalGistvllavplslavaHqlgaallllal 323
                 l+ l +++++++r+  +++++r av+l+a+ l Q ++G +  ++++p  l  aH lg+ l+lla+
  KIR60994.1 220 LVGLSVALVFAFRAVGARRAERAAVVLVAVELGQGVIGFVQYFTHLPAVLVGAHMLGSCLVLLAT 284
                 23333333334444444556666666666666666666666666666666666666666665553 PP

>> DUF2934  Protein of unknown function (DUF2934)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   3.6e-05      0.32       9      22 ..     143     156 ..     141     157 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.6e-05
     DUF2934   9 rAYelWErrGrpeG 22 
                 +AY+lW r G p+G
  KIR60994.1 143 AAYALWRRVGEPDG 156
                 8************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2375.97
//
Query:       KIR60995.1  [L=262]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-05   23.4   0.0    6.9e-05   22.6   0.0    1.4  1  HTH_5          Bacterial regulatory protein, arsR family
    0.00015   21.7   1.3    0.00015   21.7   1.3    2.0  2  HTH_20         Helix-turn-helix domain
    0.00031   20.6   0.0     0.0006   19.7   0.0    1.5  1  HTH_11         HTH domain
     0.0057   16.6   1.0      0.014   15.4   0.4    2.1  2  HTH_29         Winged helix-turn helix
     0.0067   16.3   3.6      0.011   15.6   0.8    2.6  3  MarR_2         MarR family
     0.0069   15.9   0.0      0.015   14.8   0.0    1.5  1  HTH_24         Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.026   14.4   0.0    1.5  1  MarR           MarR family
      0.029   15.1   0.4        2.1    9.1   0.0    2.7  3  ATC_hydrolase  L-2-amino-thiazoline-4-carboxylic acid hydrola
      0.079   13.1   0.0       0.21   11.7   0.0    1.7  1  HTH_9          RNA polymerase III subunit RPC82 helix-turn-he
      0.087   12.7   0.1      0.087   12.7   0.1    1.9  2  AT_hook        AT hook motif
       0.19   11.6   0.3       0.19   11.6   0.3    2.1  3  HTH_AsnC-type  AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   4.2e-08   6.9e-05       3      43 ..      44      85 ..      43      87 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4.2e-08
                HHHHHHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTT CS
       HTH_5  3 tRlkILklLae.gelcvcelaeelglsqstvShHLkkLreaG 43
                tR ++ +lL e g +++++l  +lgls++++++HL ++   G
  KIR60995.1 44 TRDRVTQLLLErGATTAGQLGSALGLSPAAIRRHLDAMLADG 85
                66677788888799**********************997665 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   1.3   9.5e-08   0.00015       6      57 ..      38      91 ..      34      95 .. 0.86
   2 ?   -2.3   0.1       2.9   4.8e+03       6      18 ..     152     164 ..     145     182 .. 0.59

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 9.5e-08
                HHS-.HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHH.CTTEEEE CS
      HTH_20  6 ALah.PvRrrilraLaraegltaselaerldlskntlsyHLrvLee.agLvevv 57
                A a+  +R r+ ++L ++++ ta++l  +l+ls++ +++HL+++    + v ++
  KIR60995.1 38 AAADlSTRDRVTQLLLERGATTAGQLGSALGLSPAAIRRHLDAMLAdGDVVARE 91
                667889999********************************6655548888765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.9
                 HHS-HHHHHHHHH CS
      HTH_20   6 ALahPvRrrilra 18 
                 AL ++ R+++++a
  KIR60995.1 152 ALEDRCRAAMEDA 164
                 5555555555544 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.7e-07    0.0006       6      44 ..      48      92 ..      44     101 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.7e-07
      HTH_11  6 lelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelg......v 44
                +++Ll +rg  ++ +L   L++S +++rr+++a+ + g       
  KIR60995.1 48 VTQLLLERGATTAGQLGSALGLSPAAIRRHLDAMLADGdvvareQ 92
                5678899***************************99994443333 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   8.9e-06     0.014       6      55 ..      51     105 ..      47     114 .. 0.80
   2 ?   -2.8   0.0         4   6.6e+03      32      46 ..     141     155 ..     133     158 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.9e-06
      HTH_29   6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegG....laalld.rrrsgrprn 55 
                 lll++G  t  q+  +lgls+  ++r+l+++ ++G     + + + +r++grp++
  KIR60995.1  51 LLLERGATTAGQLGSALGLSPAAIRRHLDAMLADGdvvaREQTVRgSRGRGRPAK 105
                 4555555578888899*******************98654448888999999997 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4
      HTH_29  32 wlkrfeegGlaalld 46 
                 ++++f ++ +aal d
  KIR60995.1 141 AVEAFAADQVAALED 155
                 678888888888877 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.8     7e-06     0.011      16      52 ..      54      88 ..      38     100 .. 0.82
   2 ?   -0.5   0.1      0.74   1.2e+03      10      27 ..     129     153 ..     126     158 .. 0.65
   3 ?   -3.2   0.0       5.1   8.3e+03       6      19 ..     228     241 ..     227     245 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7e-06
                CTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2 16 rrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52
                 r+    t+g+l  +lgls++a+ r+l+ + a G v+
  KIR60995.1 54 ERGA--TTAGQLGSALGLSPAAIRRHLDAMLADGDVV 88
                3443..6*************************99664 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.74
                 HHHHHHCTTTS........EEEHHHH CS
      MarR_2  10 vLaaLgrrpgr........dltvgel 27 
                 +L ++ r++g         d  v++l
  KIR60995.1 129 ALRWISRNGGSaaveafaaD-QVAAL 153
                 79999999998777644433.55555 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5.1
                 HHHHHHHHHHCTTT CS
      MarR_2   6 aqarvLaaLgrrpg 19 
                 ++ + La +++++g
  KIR60995.1 228 THVQRLATIAHGDG 241
                 56677899999988 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   9.3e-06     0.015      11      45 ..      51      85 ..      50      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.3e-06
      HTH_24 11 lLqknprisqreLAerlglSpstvnrrlkrLeeeG 45
                lL + + ++  +L  +lglSp++++r+l+ +  +G
  KIR60995.1 51 LLLERGATTAGQLGSALGLSPAAIRRHLDAMLADG 85
                67777889999********************9998 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.6e-05     0.026      11      45 ..      51      85 ..      47      93 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
                HHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTT CS
        MarR 11 ilyeqgplsvseLakklgvskstvtrvldrLekkG 45
                +l e+g+ +  +L+++lg+s++++ r ld++  +G
  KIR60995.1 51 LLLERGATTAGQLGSALGLSPAAIRRHLDAMLADG 85
                57799*************************99877 PP

>> ATC_hydrolase  L-2-amino-thiazoline-4-carboxylic acid hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.2   5.3e+03      12      49 ..     109     146 ..     105     167 .. 0.60
   2 ?    3.4   0.0     0.074   1.2e+02     120     144 ..     182     201 ..     170     202 .. 0.77
   3 ?    9.1   0.0    0.0013       2.1     108     144 ..     211     246 ..     205     247 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.2
  ATC_hydrolase  12 lyealkkeigkeeakeiirkalerlgkergkklaekak 49 
                    l +a++ + g     +i+  al+++ ++ g +  e+ +
     KIR60995.1 109 LTDAARGRCGTHHYDNIATAALRWISRNGGSAAVEAFA 146
                    56666666666666666666666555555555444443 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.074
  ATC_hydrolase 120 eginpkvklertktlaeGgdcCdfr 144
                    eg+ ++      +t+a+Gg+ C+ +
     KIR60995.1 182 EGYAAN-----ASTIASGGQLCQHH 201
                    444444.....89*********987 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0013
  ATC_hydrolase 108 gkllCeiDkavaeginpkvklertktlaeGgdcCdfr 144
                     + lCe + av++ + +  + +r  t+a+G+ +C  +
     KIR60995.1 211 FPQLCEAETAVISRLVGT-HVQRLATIAHGDGVCTTH 246
                    5789***********997.9**************876 PP

>> HTH_9  RNA polymerase III subunit RPC82 helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00013      0.21      17      49 ..      47      79 ..      44      83 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
                HHHHHHHHHSSBEHHHHHHHHSSTHHHHHHHHH CS
       HTH_9 17 kVvetLlrkgrltlrelvkktkLsldqVkksLv 49
                +V ++Ll++g+ t+ +l ++++Ls+  +++ L 
  KIR60995.1 47 RVTQLLLERGATTAGQLGSALGLSPAAIRRHLD 79
                799**************************9885 PP

>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   5.3e-05     0.087       2      10 ..      98     106 ..      97     109 .. 0.86
   2 ?   -2.9   0.5       6.5   1.1e+04       4       6 ..     114     116 ..     113     116 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.3e-05
     AT_hook   2 RkRGRPrKa 10 
                 R+RGRP+K 
  KIR60995.1  98 RGRGRPAKV 106
                 9*******7 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.5
     AT_hook   4 RGR 6  
                 RGR
  KIR60995.1 114 RGR 116
                 898 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   0.00012      0.19      11      41 ..      51      81 ..      50      82 .. 0.86
   2 ?   -2.9   0.0       3.9   6.3e+03      10      22 ..     151     163 ..     150     166 .. 0.76
   3 ?   -3.4   0.0       5.8   9.4e+03      31      38 ..     218     225 ..     217     227 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
  HTH_AsnC-type 11 aLqedaRisyaeLAervGlSestvlrRvrrL 41
                   +L e + ++  +L+ ++GlS+++++r ++++
     KIR60995.1 51 LLLERGATTAGQLGSALGLSPAAIRRHLDAM 81
                   67788999999**************977665 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.9
  HTH_AsnC-type  10 eaLqedaRisyae 22 
                    +aL+  +R+ +++
     KIR60995.1 151 AALEDRCRAAMED 163
                    6888889998887 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 5.8
  HTH_AsnC-type  31 estvlrRv 38 
                    e++v+ R+
     KIR60995.1 218 ETAVISRL 225
                    67888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1798.65
//
Query:       KIR60996.1  [L=476]
Description: Fe-S cluster assembly protein SufB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-76  256.9   0.5    1.9e-76  256.6   0.5    1.1  1  UPF0051   Uncharacterized protein family (UPF0051)


Domain annotation for each model (and alignments):
>> UPF0051  Uncharacterized protein family (UPF0051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.6   0.5   1.1e-80   1.9e-76       2     218 .]     222     447 ..     221     447 .. 0.97

  Alignments for each domain:
  == domain 1  score: 256.6 bits;  conditional E-value: 1.1e-80
     UPF0051   2 qfertlivveegaevtiieeyagc............gvveifvgenAklkyvkvqnwsedavnlstkraeegrdaklelttvslggkltrkepsvelkg 88 
                 qfertli+v+ega v+++   +gc            +vvei+v++nA+++y+++qnws++++nl+tkra +++ a++e++++++g+k+t+k+p v+++g
  KIR60996.1 222 QFERTLIIVDEGAYVHYV---EGCtaplyssdslhsAVVEIIVKKNARCRYTTIQNWSNNVYNLVTKRAVCHEGATMEWVDGNIGSKVTMKYPAVYMTG 317
                 89****************...677777777777777*************************************************************** PP

     UPF0051  89 egaeaelnglylakgkqhldtrtkvdhngpntssrilskgvlkdearavfrgkikvrkgaqktdahqenrnLllsdkaradtiPeleidaddvkasHgA 187
                 e+a++e+ ++++a+++qh+d + k+ h++p+tss+i+sk+++++++r+++rg ++v +g++ +++ +++++Ll++  +r+dt P++ i++ddv ++H+A
  KIR60996.1 318 EHAKGEVLSVAMAGEGQHQDAGAKMVHAAPHTSSTIVSKSIARGGGRTSYRGLVQVLEGSHSSRSTVKCDALLVDTISRSDTYPYVDIREDDVSMGHEA 416
                 *************************************************************************************************** PP

     UPF0051 188 tvGkideeqlfYLmsRGlseeeArrlivrgf 218
                 tv+ki+++qlfYLmsRGlse+eA+++ivrgf
  KIR60996.1 417 TVSKISDDQLFYLMSRGLSEDEAMAMIVRGF 447
                 ******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3514.74
//
Query:       KIR60997.1  [L=381]
Description: hypothetical protein TK50_24700 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-73  245.1   0.0    7.4e-73  244.8   0.0    1.1  1  UPF0051   Uncharacterized protein family (UPF0051)


Domain annotation for each model (and alignments):
>> UPF0051  Uncharacterized protein family (UPF0051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.8   0.0   4.1e-77   7.4e-73       3     218 .]     130     351 ..     128     351 .. 0.97

  Alignments for each domain:
  == domain 1  score: 244.8 bits;  conditional E-value: 4.1e-77
     UPF0051   3 fertlivveegaevtiieeyagc....gvveifvgenAklkyvkvqnwsedavnlstkraeegrdaklelttvslggkltrkepsvelkgegaeaelng 97 
                 f +t ++v+  aevt++ e+ag     ++ve+ v+++Akl++v+v +w+ dav+ ++ ++++grdak+ +++vslgg+l+r+++sve++g+g+eael+g
  KIR60997.1 130 FGHTFVEVGRFAEVTLVLEHAGSatlaDNVEVSVADGAKLTLVTVADWAADAVQAQHLKIRLGRDAKVVHVQVSLGGDLVRQYTSVEYTGRGGEAELYG 228
                 66999************9995555566************************************************************************ PP

     UPF0051  98 lylakgkqhldtrtkvdhngpntssrilskgvlkd.earavfrgkikvrkgaqktdahqenrnLllsdkaradtiPeleidaddvk.asHgAtvGkide 194
                 ly+a+g+qhl++r +vdhn+p+++s + ++g+l++ +a++v+ g++++r++a++td+++ nrnLllsd+arad++P+lei+++++  a+H++++G++d+
  KIR60997.1 229 LYFADGGQHLEHRQLVDHNVPDCRSYVGYRGALQGaDAHTVWVGDVLIRAEATGTDTYEINRNLLLSDGARADSVPNLEIETGEIAgAGHASATGRFDD 327
                 ***********************************89************************************************************** PP

     UPF0051 195 eqlfYLmsRGlseeeArrlivrgf 218
                 eqlfYLm+RG++e eArrl+vrgf
  KIR60997.1 328 EQLFYLMARGIPETEARRLVVRGF 351
                 ***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2807.64
//
Query:       KIR60998.1  [L=114]
Description: 2Fe-2S ferredoxin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-20   70.7   0.0    8.9e-20   70.4   0.0    1.1  1  Rieske    Rieske [2Fe-2S] domain
    4.5e-13   49.0   0.0    5.3e-13   48.8   0.0    1.1  1  Rieske_2  Rieske-like [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.0   9.9e-24   8.9e-20       3      88 ..       2      87 ..       1      88 [. 0.97

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 9.9e-24
                EEEEEGGGC-TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEE.TTSBEEE-TTHHHEEEE CS
      Rieske  3 vavakesdvpegdpltvkvggeplvvlrdedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwayd.adGkvikgPaprplaty 88
                + +++++dvp+g++++ +v g+p++++  edge+yA  d C+H+ + lseg++ e+ +leC++Hg+++d ++G+ ++ Pa++p++ y
  KIR60998.1  2 IRICAADDVPKGSVVSADVDGTPIALVHGEDGEFYAAYDECSHAAVALSEGEV-EGCTLECWLHGSRFDlRTGEPTGLPATEPVPVY 87
                579**************************************************.888**************************9998 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   5.9e-17   5.3e-13       4     102 ..       3      97 ..       1      99 [. 0.92

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 5.9e-17
                 EEEECCCS-TTB-EEEEETTEEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-BBSS.-TTSB-BEE-EEESTSEE CS
    Rieske_2   4 pvckledlvketgvaalvdgkqvalfrlekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGecle.deevslkvypvrvedgkv 101
                 ++c+ +d++k++ v a vdg+ +al++ e++e yA  + +    a +ls+G v+      ++++ l++++fdL+tGe     ++ +++vy+v v+dg +
  KIR60998.1   3 RICAADDVPKGSVVSADVDGTPIALVHGEDGEFYAAYDECSH-AAVALSEGEVEGC----TLECWLHGSRFDLRTGEPTGlPATEPVPVYAVEVRDGDI 96 
                 79***********************************99999.699*****99866....99999************999445689***********99 PP

                 E CS
    Rieske_2 102 e 102
                 +
  KIR60998.1  97 Y 97 
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 832.48
//
Query:       KIR60999.1  [L=257]
Description: cysteine desulfurase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-19   70.7   0.0    2.3e-19   70.3   0.0    1.2  1  ABC_tran        ABC transporter
    3.5e-05   23.4   0.0     0.0091   15.5   0.1    2.2  2  SMC_N           RecF/RecN/SMC N terminal domain
    0.00055   19.6   0.1     0.0012   18.5   0.1    1.5  1  AAA_29          P-loop containing region of AAA domain
    0.00059   19.7   0.2        0.1   12.4   0.0    2.1  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
     0.0044   16.6   0.0     0.0068   16.0   0.0    1.5  1  AAA_25          AAA domain
     0.0087   16.5   0.1      0.065   13.7   0.1    2.1  1  AAA             ATPase family associated with various cellula
  ------ inclusion threshold ------
      0.022   15.3   0.1      0.037   14.5   0.1    1.3  1  AAA_23          AAA domain
      0.045   14.0   0.0        0.1   12.9   0.0    1.6  1  AAA_22          AAA domain
      0.081   12.8   0.1       0.13   12.2   0.1    1.3  1  RsgA_GTPase     RsgA GTPase
      0.098   12.4   0.0       0.17   11.6   0.0    1.4  1  IstB_IS21       IstB-like ATP binding protein
       0.11   12.8   0.1       0.14   12.5   0.1    1.4  1  AAA_16          AAA ATPase domain
       0.12   12.1   0.1       0.18   11.5   0.1    1.3  1  AAA_24          AAA domain
       0.13   12.0   0.1       0.26   11.0   0.1    1.5  1  Cytidylate_kin  Cytidylate kinase
       0.18   11.4   0.0        0.4   10.3   0.0    1.6  1  AAA_27          AAA domain
       0.18   11.9   0.0       0.26   11.4   0.0    1.3  1  AAA_33          AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0   1.9e-22   2.3e-19       1     135 [.      24     175 ..      24     177 .. 0.86

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 1.9e-22
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................x RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................e 80 
                 l+ v+l+++ ge++ai+G+nG+GKStL+  +ag+ k   t G+++ldg d+      e++r+ +    q p   p+++v++                 +
  KIR60999.1  24 LSGVDLTVRSGETHAIMGPNGSGKSTLAYSIAGHPKYeiTGGSVTLDGVDVLAmSVDERARAGLFLAMQYPVEVPGVSVANFlrtaktaidgeapklrT 122
                 5789*****************************9877779*******999988788999999***************9999999888877766654443 PP

                 HHTC...HHHHHHHSTTGG.TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxx...xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdee...iekalsklglke.lkdtvvksspssLSgGqkqrvalarallkkpkllllDEp 135
                    +   +  a+++l+++  +++++v    + +SgG+k+r +++++ l kpk+ +lDE 
  KIR60999.1 123 ---WggeLRGAMQRLQMDPaFAQRNV---NEGFSGGEKKRHEIVQLELLKPKIAILDET 175
                 ...14458888888887763555555...69***************************6 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   7.6e-06    0.0091      25      44 ..      35      54 ..      26      57 .. 0.87
   2 !    5.9   0.0    0.0061       7.3     137     202 ..     149     212 ..      95     227 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.6e-06
                SEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAi 44
                +  ai+GpNGSGKs l  +i
  KIR60999.1 35 ETHAIMGPNGSGKSTLAYSI 54
                4679************9998 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0061
                 S-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
       SMC_N 137 LSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreeml 202
                 +SgGek+   +     ++  kp+ + +lDe d+ LD    + v+e +++ +++  + ++ i++ +++l
  KIR60999.1 149 FSGGEKKRHEIV---QLELLKPK-IAILDETDSGLDVDALRVVSEGVNRVRDTgdTGLLLITHYTRIL 212
                 577777654432...23444554.789*************9999998865544337777777776665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1     1e-06    0.0012      15      38 ..      27      50 ..      23      55 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1e-06
      AAA_29 15 htieidlkgatlltGpsGsGKSTl 38
                 +++++  +++ ++Gp+GsGKSTl
  KIR60999.1 27 VDLTVRSGETHAIMGPNGSGKSTL 50
                55667655599************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   8.4e-05       0.1       3      20 ..      38      55 ..      37      73 .. 0.83
   2 ?    5.5   0.0     0.011        13     253     302 ..     163     212 ..     159     213 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.4e-05
      AAA_21  3 vliGpNgsGKSnLLdald 20
                ++ GpNgsGKS+L + + 
  KIR60999.1 38 AIMGPNGSGKSTLAYSIA 55
                688**********88775 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.011
      AAA_21 253 ralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                 ++lk+ ++ ++DE ++gL+  +lr + e +++ ++ +++ ++l TH + +l
  KIR60999.1 163 ELLKP-KIAILDETDSGLDVDALRVVSEGVNRVRDtGDTGLLLITHYTRIL 212
                 55555.9********************99988888899********87766 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.7e-06    0.0068      28      56 ..      29      57 ..       2     124 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.7e-06
      AAA_25 28 gllpagelallaGapgtGKttlaldlala 56
                  ++ ge+++++G+ g+GK+tla+++a +
  KIR60999.1 29 LTVRSGETHAIMGPNGSGKSTLAYSIAGH 57
                467789*******************9965 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   5.5e-05     0.065       3      40 ..      39      80 ..      38     197 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.5e-05
                EESSTTSSHHHHHHHHHHHHTHE....EEEEETTTCSSSSTT CS
         AAA  3 lyGppGtGKTllakavakelgve....fleisgsellskyvg 40
                ++Gp G GK++la ++a + + e     ++++g ++l + v 
  KIR60999.1 39 IMGPNGSGKSTLAYSIAGHPKYEitggSVTLDGVDVLAMSVD 80
                68****************965432233455555555544333 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   3.1e-05     0.037      23      39 ..      38      54 ..      25      56 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.1e-05
      AAA_23 23 lItGpNGaGKTTildAi 39
                +I GpNG+GK+T+   i
  KIR60999.1 38 AIMGPNGSGKSTLAYSI 54
                79**********97665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.7e-05       0.1       9     128 ..      38     205 ..      31     215 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.7e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee..................erpevv.fvtlpsst...sskdllrellralglelka............... 70 
                 +++G+ G+GK+tl+  ++   +  ++++                   +r++++  ++ p++    s +++lr    a++ e+ +               
  KIR60999.1  38 AIMGPNGSGKSTLAYSIAGHPK--YEITGgsvtldgvdvlamsvderARAGLFlAMQYPVEVpgvSVANFLRTAKTAIDGEAPKlrtwggelrgamqrl 134
                 79************99999863..334445799999999999999876666667444444444488999999999999999999888888888866555 PP

      AAA_22  71 .......erlsseellealeqalrarav................ielliiDEaqh.lrseealeeLrsllnl..srkgvqliLv 128
                        +            +++++ +                 +++ i+DE +  l   +al+ +++ +n   ++ ++ l+L+
  KIR60999.1 135 qmdpafaQ------------RNVNEGFSggekkrheivqlellkPKIAILDETDSgL-DVDALRVVSEGVNRvrDTGDTGLLLI 205
                 55555531............2222222233333333333555777888888888888.55555555444444444666666666 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00011      0.13      98     127 ..      33      62 ..       7      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
                  TTSEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelkt 127
                  +++t +++G+ G GKStL  +++++ + ++
   KIR60999.1  33 SGETHAIMGPNGSGKSTLAYSIAGHPKYEI 62 
                  45899**************99999876655 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00014      0.17      44      68 ..      31      55 ..       3      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
   IstB_IS21 44 iekkenivllGpsGvGKshlaialg 68
                +++ e  +++Gp G GKs la +++
  KIR60999.1 31 VRSGETHAIMGPNGSGKSTLAYSIA 55
                6778999***************997 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00012      0.14      16      52 ..      27      64 ..      17     205 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
      AAA_16 16 le.rvrsgrpelvllsGesGvGKsslvrellralekd..g 52
                ++ +vrsg+     + G+ G+GKs+l+ +++ + + +  g
  KIR60999.1 27 VDlTVRSGE--THAIMGPNGSGKSTLAYSIAGHPKYEitG 64
                555677775..5667***********98888766666442 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00015      0.18       6      25 ..      38      57 ..      33      81 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
      AAA_24  6 liyGpsgiGKTtlakelgpk 25
                +i+Gp+g+GK+tla+++  +
  KIR60999.1 38 AIMGPNGSGKSTLAYSIAGH 57
                89*************98443 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00022      0.26       2      24 ..      38      60 ..      37      68 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00022
                    EEE-STTSSHHHHHHHHHHHHT- CS
  Cytidylate_kin  2 aiDGPagsGKssvaralaeklgl 24
                    ai GP gsGKs++a  +a + ++
      KIR60999.1 38 AIMGPNGSGKSTLAYSIAGHPKY 60
                    799**************987665 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00033       0.4      20      46 ..      28      54 ..      24      57 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00033
      AAA_27 20 dfsaeeadlhliyGpNEAGKstalrAi 46
                d+   + + h i+GpN +GKst+  +i
  KIR60999.1 28 DLTVRSGETHAIMGPNGSGKSTLAYSI 54
                566667788*************97665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00022      0.26       4      26 ..      39      61 ..      37     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00022
      AAA_33  4 lvGlpGsGKstlaerllkklgav 26
                + G++GsGKstla +++ + +++
  KIR60999.1 39 IMGPNGSGKSTLAYSIAGHPKYE 61
                57***********9998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1822.35
//
Query:       KIR61000.1  [L=434]
Description: cysteine desulfurase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.4e-135  451.2   0.0     3e-135  450.9   0.0    1.1  1  Aminotran_5      Aminotransferase class-V
     0.0011   17.6   0.0     0.0025   16.4   0.0    1.5  2  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
     0.0085   15.4   0.0      0.013   14.9   0.0    1.3  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
      0.041   13.1   0.0      0.082   12.1   0.0    1.5  2  Aminotran_1_2    Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  450.9   0.0  6.8e-139    3e-135       1     371 []      41     422 ..      41     422 .. 0.98

  Alignments for each domain:
  == domain 1  score: 450.9 bits;  conditional E-value: 6.8e-139
                  EEEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC...........-TT CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslars...........lkp 87 
                  +yldsa t++kp++Vld l+e+y ++nanv rsvh+lg+eat+a+e ar+k+a+++na+s +e++ft+++teainlva+++ ++           l p
   KIR61000.1  41 VYLDSANTSHKPRQVLDVLAEHYARHNANVSRSVHTLGTEATEAYEGARAKIARFVNAPSVDEVVFTKNSTEAINLVAYAFSNAslradadprfrLGP 138
                  7******************************************************************************997655444556667889* PP

                  TSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS-- CS
  Aminotran_5  88 gdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipi 185
                  gdeiv++e+ehh+n+vpwq la+rtga+++++pl++ g+ld + l++l++e+tk+v++ h+sn++Gt++ +++i+++++++gal+l+D +q+v+h pi
   KIR61000.1 139 GDEIVISEMEHHSNIVPWQLLAERTGATLRWFPLTDAGRLDESGLDDLVTERTKIVSLVHMSNILGTVNATARITARVREVGALLLLDCSQSVPHLPI 236
                  ************************************************************************************************** PP

                  -HHHHTESEEEEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHH CS
  Aminotran_5 186 dvkklgvDflafsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekel 283
                  dv +l++Df++f+ghK++gPtGiGvl++r ell +++p+++gg+m+e+v++ ++tfa +p +feaGTp++a++++lgaa++yl  ++++a++ hekel
   KIR61000.1 237 DVVDLDADFVVFTGHKMCGPTGIGVLWGRGELLAAMPPVMGGGSMIETVTMARSTFAAPPARFEAGTPPIAEAVALGAAVDYLTGLDMRAVQWHEKEL 334
                  ************************************************************************************************** PP

                  HHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTTHHHHHHTT.S-EEEEE--TTS-HHHHHHH CS
  Aminotran_5 284 aeyllerlkslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhcaqplmkrlalegtvRaSlyiynteeevdrl 371
                  ++y+l++l+ +pg+r++gp++   r +++sf++ ++h++dv+++Ld+ g+ vr Ghhca+p+++r++++++ RaS+y+y+t  e+d+l
   KIR61000.1 335 TAYALDALATVPGLRIFGPTVPVGRGGTISFALGDIHPHDVGQVLDSLGVQVRVGHHCAKPVCSRFGVPAMTRASFYLYTTTSEIDAL 422
                  **************************************************************************************97 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.33   1.5e+03     242     279 ..      70     107 ..      65     125 .. 0.77
   2 !   16.4   0.0   5.7e-07    0.0025      90     198 ..     138     252 ..     132     258 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.33
                      HHHHHTTHHHHHHHHHHHHH.HHHHHHHTSTTEEEEE-T CS
  Cys_Met_Meta_PP 242 llrGlkTLslRlerhqenAl.kvAefLekhpkvekvyYp 279
                      + r ++TL+    ++ e A  k+A+f +  p+v +v + 
       KIR61000.1  70 VSRSVHTLGTEATEAYEGARaKIARFVN-APSVDEVVFT 107
                      5678889999998888888537888875.5889988886 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 5.7e-07
                      TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHH.....HHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTH CS
  Cys_Met_Meta_PP  90 aGdeivvsddlYggtqrllkkvlkklgievkfvdtsdlee.....lekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfas 178
                       Gdeiv+s+  + +     + +++++g + +++  +d+ +     l   ++e+tk+v l  ++n+l  v   ++i++ ++++g+l+++D + + 
       KIR61000.1 138 PGDEIVISEMEHHSNIVPWQLLAERTGATLRWFPLTDAGRldesgLDDLVTERTKIVSLVHMSNILGTVNATARITARVREVGALLLLDCSQSV 231
                      6899999999999999999999999999999998866655111116678999****************************************** PP

                      T.TTS-GGGGT-SEEEEETTT CS
  Cys_Met_Meta_PP 179 p.llqrplklgaDivvhSaTK 198
                      p l +  ++l+aD vv  + K
       KIR61000.1 232 PhLPIDVVDLDADFVVFTGHK 252
                      *777999********977666 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.8e-06     0.013      57     149 ..     128     231 ..      69     234 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.8e-06
                      H.....TTTTTT-EEEEESSS-THHH...HH.HHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEEEEEB-G...GGB---HHHHHHHHHHCT CS
  DegT_DnrJ_EryC1  57 a.....lgvgpgdeVIvpsltFvata...na.vlelgakpvfvDvdpdtynidpaaieaaitertkaIlpVhl...yGqvadmdalkaiaakhg 138
                      a     + +gpgde+++  +   + +   +  + ++ga+      + d   +d + +  ++tertk + +Vh+   +G v+  ++++a  ++ g
       KIR61000.1 128 AdadprFRLGPGDEIVISEMEHHSNIvpwQLlAERTGATLRWFPLT-DAGRLDESGLDDLVTERTKIVSLVHMsniLGTVNATARITARVREVG 220
                      2444445566888887776554444311133255666666666555.8899*********************73336888888999999999** PP

                      -EEEEE-TT-T CS
  DegT_DnrJ_EryC1 139 lkvieDaAhAl 149
                        ++ D+++++
       KIR61000.1 221 ALLLLDCSQSV 231
                      ********987 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.8e-05     0.082      48     187 ..      87     226 ..      42     294 .. 0.85
   2 ?   -2.3   0.0      0.41   1.8e+03     324     354 ..     378     408 ..     320     409 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.8e-05
                    HHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHH.............HTTT-EEEEEESS-THHHH....HHHHTTSEEEEEEBEETT CS
  Aminotran_1_2  48 eleealakflgrseklklkreaavvvgsGagaliealifllk.............lnpgdeilvpdptyasykn....ilrlsggevvryplysee 126
                     ++ ++a+f++          ++vv++  ++++i++++ +++             l pgdei++++  + s +      ++  g++++ +pl+  +
     KIR61000.1  87 GARAKIARFVN------APSVDEVVFTKNSTEAINLVAYAFSnaslradadprfrLGPGDEIVISEMEHHSNIVpwqlLAERTGATLRWFPLT--D 174
                    56788888888......45556888888888888888888888999999999999*************998776122145568999*****99..9 PP

                    TTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEE CS
  Aminotran_1_2 127 dfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvD 187
                      +ld  +l+++++e      +tk++ +   +N  Gtv   + +++    +++ ++ll++D
     KIR61000.1 175 AGRLDESGLDDLVTE------RTKIVSLVHMSNILGTVNATARITAR---VREVGALLLLD 226
                    99*************......*****************999988887...88888888887 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.41
                    HHHTCTEEEEEGGGGTSTTEEEEECTTS-HH CS
  Aminotran_1_2 324 LleevgvyvtpgtsftvpgrlRitvAgltee 354
                     l+  gv v+ g ++ +p + R+ v+++t++
     KIR61000.1 378 VLDSLGVQVRVGHHCAKPVCSRFGVPAMTRA 408
                    5677799999999999999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2860.11
//
Query:       KIR61001.1  [L=157]
Description: nitrogen fixation protein NifU [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-25   88.7   0.0    3.9e-25   88.4   0.0    1.1  1  NifU_N    NifU-like N terminal domain


Domain annotation for each model (and alignments):
>> NifU_N  NifU-like N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   2.2e-29   3.9e-25       2     128 ..       7     132 ..       6     133 .. 0.91

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 2.2e-29
                 SCHHHHHHHHSSSSBSS-TTSSS-..-EEEEEEETTTTEEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHCCCCHHHHHHHHT CS
      NifU_N   2 ysdkvldhyknPrnvGvleeedak..vgvgevgapacGDavrLqikvdeetdriedakFktfGCgsaiAssslltelvkgktleealkitnkeiaeelg 98 
                 y++ +ldhyk P+ +G +++ d++  v+ +++++p+cGD+v+++++ d    ++ d++++++GC++++As+s+l el+ g++  ea ++++   +e ++
  KIR61001.1   7 YQEIILDHYKRPHGRGLRDADDPTdrVAEAHHVNPTCGDEVTVRVATDG--VVLHDVSYDGMGCSISQASASVLHELLRGREAGEAFAVHEA-FVELMS 102
                 99******************999889***************98888777..799********************************666543.345566 PP

                 CSCSSSCHCSCHHHHHHHHHHHHHHHHCTH CS
      NifU_N  99 glpkeklhcsvlaedalkaavkkYkakkke 128
                 g++++  +++vl++ ++ a+v++Y+a+ k+
  KIR61001.1 103 GRGQVTPDEDVLGDGVAFAGVARYPARVKC 132
                 6**************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1112.61
//
Query:       KIR61002.1  [L=207]
Description: lysine transporter LysE [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-17   63.7  15.5      2e-17   63.3  15.5    1.1  1  LysE      LysE type translocator


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3  15.5   1.1e-21     2e-17       3     191 ..      15     205 ..      14     207 .] 0.95

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 1.1e-21
        LysE   3 lllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksve...aslvk 98 
                 +++++G+  +l++  +++ +f+ g ++algv+++d v++ +++lG a++      v   lrl+ +a+Ll ++v  + +a+ +  ++e+  +   +s  +
  KIR61002.1  15 VAVPVGAIAVLIMGLSARTSFRVGAAAALGVATADGVYAAVATLGGAAVAGLVAPVGGPLRLVAAAVLLAIAVRGAWQALHPRPVREAGRRrglESPGR 113
                 5899*****************************************************************************99988887777999999* PP

        LysE  99 pflkglllslsNPkailfwlsvisallakaeqygdagrlilaaglvvasliwfsllaflaarlsrrlsskkvlriinvvvgvlligfavklll 191
                  f+  l+l+++NP +++++++++ a  + ++  g a+ ++++ag+++as  w  l+a +++++ r l  ++ +r+   v ++++ ++av +ll
  KIR61002.1 114 AFAGLLALTMLNPATVVYFAALVLARND-GHGVGPAAAVAFVAGAFLASASWQLLVAGGGSVVGRALTGPRGRRVTGLVSSAIIAALAVAVLL 205
                 *******************999877666.589999******************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1581.27
//
Query:       KIR61003.1  [L=213]
Description: hypothetical protein TK50_24735 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-44  149.2  10.5    1.2e-43  148.5  10.5    1.3  1  acVLRF1         Actinobacteria/chloroflexi VLRF1 release fact
    3.3e-24   85.7   8.2    3.3e-24   85.7   8.2    1.4  2  baeRF_family10  Bacterial archaeo-eukaryotic release factor f
      0.002   18.2   5.6      0.002   18.2   5.6    1.7  2  baeRF_family2   Bacterial archaeo-eukaryotic release factor f
     0.0036   17.6   0.0     0.0044   17.3   0.0    1.2  1  eRF1_2          eRF1 domain 2


Domain annotation for each model (and alignments):
>> acVLRF1  Actinobacteria/chloroflexi VLRF1 release factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5  10.5   2.6e-47   1.2e-43       1     129 [.      78     209 ..      78     210 .. 0.98

  Alignments for each domain:
  == domain 1  score: 148.5 bits;  conditional E-value: 2.6e-47
     acVLRF1   1 rrlgvllvrrggfavgvveggelvaskvgtrdvqgrtaaGGwSqqRfaRrrenqadalleavaeaaarllaeesae...vvlgGdrslvaevledarla 96 
                 rr+g+ll r+g+ avgv+eg++lv skv+tr+vqgrtaaGGwSqqRfaRrr+nqa+a+l ++ae a rll +e+a+   vv+gGdr++v+ vl+d+rla
  KIR61003.1  78 RRIGLLLARKGAVAVGVAEGEKLVVSKVDTRYVQGRTAAGGWSQQRFARRRDNQAKAALGDAAELAVRLLLPEAAHlaaVVCGGDRRAVEGVLADRRLA 176
                 689*******************************************************************988888889******************** PP

     acVLRF1  97 platlareelldvpdprravLedavrraravrv 129
                 pla+l+ ++lldvp+pr avL da++ aravr+
  KIR61003.1 177 PLAELRADRLLDVPEPRLAVLVDAIAAARAVRI 209
                 *******************************98 PP

>> baeRF_family10  Bacterial archaeo-eukaryotic release factor family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.1   9.2e+03      52      72 ..       7      31 ..       3      38 .. 0.60
   2 !   85.7   8.2   7.4e-28   3.3e-24       5     140 .]      69     205 ..      66     205 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.1
  baeRF_family10 52 tggwk....sqdrfqrreeeqaerh 72
                    +gg +    + +r+ r+++  a+rh
      KIR61003.1  7 AGGGRwvevAPARVDRWVDGFADRH 31
                    5555545555566667766666666 PP

  == domain 2  score: 85.7 bits;  conditional E-value: 7.4e-28
  baeRF_family10   5 pLlealdeyerygvvlvdreraRlfevylgeleeveevegevpgrtktggwksqdrfqrreeeqaerhlkevAellaklleerg..verlvlgGd 97 
                      +++a+++++r+g++l +++ +++ + ++ +l+ +++ ++ v+grt++ggw sq+rf+rr+++qa+++l ++Ael+++ll ++   + ++v+gGd
      KIR61003.1  69 GFVAAARAPRRIGLLLARKGAVAVGVAEGEKLVVSKVDTRYVQGRTAAGGW-SQQRFARRRDNQAKAALGDAAELAVRLLLPEAahLAAVVCGGD 162
                     6899***********************************************.****************************99887799******* PP

  baeRF_family10  98 .eeetaalldrlpkalrarvvgt.lplpvdasaaaVlekaeeaae 140
                      ++++ +l+dr+ ++l+++ +++ l++p+  ++ aVl +a +aa+
      KIR61003.1 163 rRAVEGVLADRRLAPLAELRADRlLDVPE--PRLAVLVDAIAAAR 205
                     9999*******************99****..*******9999886 PP

>> baeRF_family2  Bacterial archaeo-eukaryotic release factor family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.91   4.1e+03     114     134 ..      14      30 ..       6      33 .. 0.48
   2 !   18.2   5.6   4.5e-07     0.002       9      93 ..      86     171 ..      82     212 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.91
  baeRF_family2 114 gadrealaeevaealaerrar 134
                    +++++    +v+++++++++r
     KIR61003.1  14 EVAPA----RVDRWVDGFADR 30 
                    44444....444444444444 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 4.5e-07
  baeRF_family2   9 rtGadltlvdaggeeeeetveGghdpvhkvraggwshrryqrraeeswerNaeavAeevdrlvresgael..VvlaGDvrarsllrd 93 
                    r+Ga    v++g++    +v+ +  +  +++aggws++r+ rr +++++    + Ae   rl   ++a+l  Vv  GD ra++ + +
     KIR61003.1  86 RKGAVAVGVAEGEKLVVSKVDTRYVQG-RTAAGGWSQQRFARRRDNQAKAALGDAAELAVRLLLPEAAHLaaVVCGGDRRAVEGVLA 171
                    566666666666666666666655555.4559****************************998666555333999******998764 PP

>> eRF1_2  eRF1 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   9.9e-07    0.0044       5      85 ..      83     162 ..      79     192 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 9.9e-07
                 EEEETTEEEEEEEESSCEEEEEEEE------BSTTBSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTTESEEEEEES CS
      eRF1_2   5 ivldegeAtigllkgsrtevlkkievsvPkKhkrGgqsarrfeRlreekleeflkkvaeaankafllvdkdklkgiilagp 85 
                 ++  +g   +g+ +g++  v k  +  v + + +Gg s++rf+R r+++++  l   ae a + +l  +  +l++++ +g 
  KIR61003.1  83 LLARKGAVAVGVAEGEKLVVSKVDTRYVQGRTAAGGWSQQRFARRRDNQAKAALGDAAELAVRLLL-PEAAHLAAVVCGGD 162
                 444445556666667666666666778999*********************************977.69999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1573.99
//
Query:       KIR61004.1  [L=534]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-49  166.1   1.0      1e-22   81.1   0.0    3.2  3  ABC_tran         ABC transporter
    5.9e-21   75.6   3.6      1e-05   25.5   0.0    4.2  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    6.2e-09   35.6   0.1       0.15   11.4   0.0    4.1  4  SMC_N            RecF/RecN/SMC N terminal domain
    1.9e-08   34.2   2.9    3.9e-08   33.2   2.9    1.5  1  ABC_tran_Xtn     ABC transporter
    1.5e-06   28.8   0.4        0.4   11.2   0.0    3.3  3  AAA_18           AAA domain
    5.8e-06   26.5   0.1       0.16   12.2   0.0    3.3  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
      1e-05   26.0   5.0      0.028   14.8   0.0    2.7  2  AAA_16           AAA ATPase domain
    1.5e-05   25.6   0.1      0.062   13.8   0.0    2.5  2  AAA_23           AAA domain
    3.1e-05   23.6   0.4      0.095   12.5   0.0    2.5  2  AAA_29           P-loop containing region of AAA domain
    0.00013   21.5   0.5       0.01   15.3   0.1    2.3  2  Arf              ADP-ribosylation factor family
    0.00019   21.5   0.0       0.96    9.5   0.0    2.7  2  MMR_HSR1         50S ribosome-binding GTPase
    0.00021   21.6   1.2        1.3    9.3   0.1    3.6  3  AAA_22           AAA domain
    0.00045   20.2   0.3       0.43   10.5   0.1    2.4  2  RsgA_GTPase      RsgA GTPase
     0.0012   19.1   2.9          1    9.6   0.0    2.9  2  AAA_28           AAA domain
     0.0017   18.1   0.0        1.5    8.5   0.0    2.4  2  AAA_24           AAA domain
     0.0021   18.2   2.2        2.2    8.4   0.2    3.8  3  AAA_33           AAA domain
     0.0028   17.3   0.8        2.7    7.5   0.0    3.1  3  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0062   16.2   6.7       0.66    9.6   0.2    3.4  4  SRP54            SRP54-type protein, GTPase domain
     0.0062   17.0   0.4        2.7    8.4   0.0    3.7  4  AAA              ATPase family associated with various cellul
     0.0073   16.2   0.7        1.5    8.8   0.1    2.7  2  NACHT            NACHT domain
     0.0089   15.8   0.0        1.6    8.3   0.0    2.4  2  AAA_15           AAA ATPase domain
  ------ inclusion threshold ------
      0.013   14.5   1.8        2.9    6.8   0.1    2.7  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.017   13.8   3.1        1.1    7.8   0.0    3.3  4  AAA_13           AAA domain
      0.017   14.8   5.6        1.1    8.9   0.0    2.9  2  AAA_30           AAA domain
      0.019   14.2   0.1        2.5    7.3   0.1    2.6  2  Zeta_toxin       Zeta toxin
      0.021   14.4   2.6       0.94    9.0   0.0    2.9  3  AAA_27           AAA domain
      0.028   14.3   0.0        8.1    6.4   0.0    2.5  2  MobB             Molybdopterin guanine dinucleotide synthesis
      0.029   14.4   0.7         10    6.2   0.1    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.029   11.9   0.2      0.029   11.9   0.2    2.9  3  DUF3584          Protein of unknown function (DUF3584)
      0.056   13.5   2.0        4.8    7.2   0.1    2.6  2  DUF87            Helicase HerA, central domain
      0.063   13.0   1.3        6.8    6.4   0.1    2.5  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.079   12.6   0.0        4.7    6.8   0.0    2.3  2  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
       0.15   10.8   0.3        1.1    8.0   0.0    2.1  2  DLIC             Dynein light intermediate chain (DLIC)
       0.38   10.4   2.5        5.4    6.6   0.1    2.7  2  Thymidylate_kin  Thymidylate kinase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0   1.9e-25     1e-22       1     137 []      17     189 ..      17     189 .. 0.84
   2 ?    0.5   0.2       1.5   7.9e+02      52     103 ..     260     314 ..     245     319 .. 0.67
   3 !   81.1   0.0   1.9e-25     1e-22       2     137 .]     344     473 ..     343     473 .. 0.88

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 1.9e-25
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S.-TTSBHHHH................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx................... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepql.fpeltvren................... 79 
                 l++ +l +++g ++++vG+nGaGK+t lk+lag+ +p +G+i               r+ ig+lpq+p+  + e+t r++                   
  KIR61004.1  17 LSDTTLRVQPGDRIGLVGRNGAGKTTTLKVLAGEGQPYAGQI-------------DRRSAIGYLPQDPRTgDLEVTGRDRvlsargldvlmaqmkevea 102
                 578899************************************.............67888888888854404455556668888888888888888888 PP

                 ...........................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTS.....SEEEEESTTT CS
                 ...........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxx RF
    ABC_tran  80 ...........................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkp.....kllllDEpta 137
                                            ++++e++++ ++lgl++   + + +   +LSgGq++rv+lar+l++++      +lllDEpt+
  KIR61004.1 103 qlaenaddrlvrrygaledqfaalggyAAEAEAARICANLGLPD---RALAQTIGTLSGGQRRRVELARILFRDAgenggGILLLDEPTN 189
                 88888899999999999999999999888899999999999888...7776777******************987443446********7 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.5
                 B-HHHCCHCEEEE-SS...--S-TTSBHHHHHHHTCHHHHHHHSTTGGTTCBGES CS
                 xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  52 qeleslrkeigvlpqe...pqlfpeltvrenesdeeiekalsklglkelkdtvvk 103
                 +e+  ++k+ g l  +    + + ++tv+ +++ +++ek++s l+ + + d+v+k
  KIR61004.1 260 RERANAEKKAGALMAQadkMRAKATKTVAAQNMARRAEKLISGLEEVRVSDKVAK 314
                 4455555555555544344555556667777999999999999999998888775 PP

  == domain 3  score: 81.1 bits;  conditional E-value: 1.9e-25
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH....HHHTCHHHHHHHSTTG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx....xxxxxxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren....esdeeiekalsklglk 95 
                  +v++ + +g++vai+G nGaGK+tLl++l gll+p+ Ge+           +     ++g++ qe ++l+ e tv en    + ++  +++++ lg  
  KIR61004.1 344 TDVNVAVDRGSRVAILGLNGAGKTTLLRMLGGLLEPDTGEV-----------HAGHGLRLGYYAQEhETLDVERTVLENmraaAIEQTDTELRKILGAF 431
                 689**************************************...........56688999*****9999999999****88874444455555555666 PP

                 GTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  96 elkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  +  + v++ +  LSgG+k r+al  ++++ +++lllDEpt+
  KIR61004.1 432 LFSGEDVDKPAGVLSGGEKTRLALSTLVCSGANVLLLDEPTN 473
                 67789998889******************************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   9.1e-05     0.048       3      20 ..      31      48 ..      30      83 .. 0.78
   2 !   25.5   0.0   1.9e-08     1e-05     230     302 ..     149     220 ..      89     221 .. 0.86
   3 !   12.7   0.3   0.00015     0.081       3      23 ..     357     377 ..     356     396 .. 0.82
   4 !   21.1   0.0   4.2e-07   0.00022     224     300 ..     432     502 ..     413     505 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.1e-05
      AAA_21  3 vliGpNgsGKSnLLdald 20
                +l+G+Ng+GK++ L+ l 
  KIR61004.1 31 GLVGRNGAGKTTTLKVLA 48
                69**************94 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 1.9e-08
      AAA_21 230 qelparelSdGtkrllalltallralkkg..sllliDEpEngLHPkllrrllellkelsrngaQviltTHSplll 302
                    ++  lS G++r   l+ +l+r+++++  ++ll+DEp n+L+   ++ l ++l +++     +i+ +H+ +ll
  KIR61004.1 149 LAQTIGTLSGGQRRRVELARILFRDAGENggGILLLDEPTNHLDADSITWLRGFLANHKG---GLIVISHDGSLL 220
                 55678899********************9**************************88866...9******96665 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 0.00015
      AAA_21   3 vliGpNgsGKSnLLdaldlla 23 
                 ++ G Ng+GK++LL+ l +l 
  KIR61004.1 357 AILGLNGAGKTTLLRMLGGLL 377
                 799**************9985 PP

  == domain 4  score: 21.1 bits;  conditional E-value: 4.2e-07
      AAA_21 224 lengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpl 300
                 l  g + + pa  lS G k  lal t++ + +    +ll+DEp n+L+P   + +l+ + +     + ++l+TH+p 
  KIR61004.1 432 LFSGEDVDKPAGVLSGGEKTRLALSTLVCSGA---NVLLLDEPTNNLDPVSREQVLDAIARY---PGAIVLVTHDPG 502
                 5667777789999********99999999988...89************999*9*9999444...347*******95 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.11        56      28      41 ..      31      44 ..      18      48 .. 0.81
   2 !   10.9   0.0   0.00043      0.23     136     205 ..     155     223 ..      83     235 .. 0.84
   3 ?    4.9   0.0     0.029        15      26      41 ..     355     370 ..     335     377 .. 0.82
   4 !   11.4   0.0   0.00029      0.15     135     185 ..     436     489 ..     389     505 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.11
                EEEESTTSSHHHHH CS
                xxxxxxxxxxxxxx RF
       SMC_N 28 aivGpNGSGKsnll 41
                 +vG+NG+GK+  l
  KIR61004.1 31 GLVGRNGAGKTTTL 44
                589*******9765 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00043
                 CS-HHHHHHHHHH.HHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvala.LlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                 +LSgG++  v la +lf     +   + llDe   +LD+  ++ +  +l +++    +ivis++  +le +
  KIR61004.1 155 TLSGGQRRRVELArILFRDAGENGGGILLLDEPTNHLDADSITWLRGFLANHK--GGLIVISHDGSLLESV 223
                 8******9999984566677788999************************999..99******99988876 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.029
                 EEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnll 41 
                   ai+G NG+GK+ ll
  KIR61004.1 355 RVAILGLNGAGKTTLL 370
                 468**********987 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.00029
                 T.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH CS
                 x.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke 185
                 e       +LSgGekt +al+ l     ++ a + llDe   +LD   +++v + + +
  KIR61004.1 436 EdvdkpagVLSGGEKTRLALSTL----VCSGANVLLLDEPTNNLDPVSREQVLDAIAR 489
                 355555668*******8887766....789999******************9998876 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   2.9   7.5e-11   3.9e-08       4      82 ..     233     314 ..     230     317 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 7.5e-11
  ABC_tran_Xtn   4 engklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLekl....ekiekpeekkpk 82 
                   +++ +  Y+  +++yle +e ++++ ++++++ +k+   l++  +++raka+k+ +aq++ ++ ekl    e++  + +k +k
    KIR61004.1 233 TRSVVDVYNLGWKAYLEARETDERRRRRERANAEKKAGALMAQADKMRAKATKTVAAQNMARRAEKLisglEEVRVS-DKVAK 314
                   6778899***********************************************************97555555444.34445 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0041       2.2       1      68 [.      30     101 ..      30     120 .. 0.72
   2 ?    5.2   0.0     0.055        29      65     119 ..     204     268 ..     164     283 .. 0.61
   3 !   11.2   0.0   0.00076       0.4       1      44 [.     356     408 ..     356     447 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0041
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.gvnlrdvakenglllevdpe..aldeskrldedkldklldaleens 68 
                 I+l G  G+GKtt  k L+ ++  + g++ r  a    + ++++ +   + + ++l    ld+l+ +++e  
  KIR61004.1  30 IGLVGRNGAGKTTTLKVLAGEGqPYaGQIDRRSAIGYLPQDPRTGDleVTGRDRVLSARGLDVLMAQMKEVE 101
                 8999**************988755676666666666555555555566667777777777777777766654 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.055
      AAA_18  65 eenssaleegknlvidghlaeleseaakdikk...............vvLtaspeelleRlekRgyeeak 119
                  +     ++g+ +vi+   + les  +k +                  +L+a++   ++R ++R + e+k
  KIR61004.1 204 AN-----HKGGLIVISHDGSLLESVVNKVWFLdatrsvvdvynlgwkAYLEARETDERRRRRERANAEKK 268
                 22.....3344444444444444444444444555555588888888*******5555555555545444 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00076
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.........gvnlrdvakenglllevdpe 44 
                 +++ G  G+GKttl + L  +l+          g +l+ +a+e+++l+ +   
  KIR61004.1 356 VAILGLNGAGKTTLLRMLGGLLEPdtgevhaghGLRLGYYAQEHETLDVERTV 408
                 6899**************77762233444444455555555555554444333 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0016      0.83      25      87 ..     148     202 ..     138     205 .. 0.79
   2 !   12.2   0.0   0.00031      0.16      25      89 ..     437     488 ..     432     489 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0016
     SbcCD_C  25 elsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllel 87 
                  l + +gtlSGG++   + la       l+++a g e+  ++++LDE  + lD++si+ l ++
  KIR61004.1 148 ALAQTIGTLSGGQR-RRVELARI-----LFRDA-G-ENGGGILLLDEPTNHLDADSITWLRGF 202
                 577899999***99.55555444.....78886.5.8999***************99866655 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00031
     SbcCD_C  25 elsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 ++++ +g lSGGek         +al+ l++s         +++LDE  ++lD+ s++++l++++
  KIR61004.1 437 DVDKPAGVLSGGEK-------TRLALSTLVCS------GANVLLLDEPTNNLDPVSREQVLDAIA 488
                 47889999******.......66678888888......4689******************99875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   2.2   0.00081      0.43      27     169 ..      30     212 ..      16     213 .. 0.65
   2 !   14.8   0.0   5.4e-05     0.028      23     127 ..     352     459 ..     341     497 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00081
      AAA_16  27 vllsGesGvGKsslvrellr.......alekd.ggiflrgkcdqlesaipy......salaqalareellrqlldeaesaeleawrekleeala..... 106
                 + l+G  G GK++ ++ l+        ++ ++  + +l ++ +              + +++a   + l++q+++  e++++e ++++l ++++     
  KIR61004.1  30 IGLVGRNGAGKTTTLKVLAGegqpyagQIDRRsAIGYLPQDPRTG-----DlevtgrDRVLSARGLDVLMAQMKEV-EAQLAENADDRLVRRYGaledq 122
                 5589***********999953333333333333122222222222.....01223333355555445666666655.6668888888888888899999 PP

      AAA_16 107 .........................avpelagaea.......srllellkrll.allsrderplvlvlDdlqwadeaslqllaaLlrlleskpllv 169
                                          a   la           +r + +l+r+l + + +++  ++l+ +    +d++s ++l+ +l++ + + l+v
  KIR61004.1 123 faalggyaaeaeaaricanlglpdrA---LAQ--TigtlsggQRRRVELARILfRDAGENGGGILLLDEPTNHLDADSITWLRGFLANHK-GGLIV 212
                 99999888888888888877664432...333..1446668899999999***9999997775555555678***********9999866.46666 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 5.4e-05
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala.............. 106
                 r++ v + G  G GK++l+r+l   le d g + +g+  +l         +aq  ++ ++ r +l++ ++a+ e+ +++l++ l+              
  KIR61004.1 352 RGSRVAILGLNGAGKTTLLRMLGGLLEPDTGEVHAGHGLRL-------GyYAQEHETLDVERTVLENMRAAAIEQTDTELRKILGaflfsgedvdkpag 443
                 457899*****************999999888899998888.......448888888788888888888888888888888888888888885555333 PP

      AAA_16 107 ....avpelagaeasrllellkrll 127
                               +  + +l+ l+
  KIR61004.1 444 vlsgG---------EKTRLALSTLV 459
                 33330.........44444444444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0     0.003       1.6      24      37 ..      32      45 ..      21      48 .. 0.89
   2 !   13.8   0.0   0.00012     0.062      23      39 ..     357     373 ..     337     420 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.003
      AAA_23 24 ItGpNGaGKTTild 37
                ++G NGaGKTT l 
  KIR61004.1 32 LVGRNGAGKTTTLK 45
                79*********986 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 0.00012
      AAA_23  23 lItGpNGaGKTTildAi 39 
                 +I G NGaGKTT+l+ +
  KIR61004.1 357 AILGLNGAGKTTLLRML 373
                 79************977 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1    0.0026       1.4      14      39 ..      19      44 ..      16      50 .. 0.84
   2 !   12.5   0.0   0.00018     0.095      12      48 ..     343     379 ..     341     385 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0026
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTll 39
                ++t+++++ + + l+G++G+GK+T l
  KIR61004.1 19 DTTLRVQPGDRIGLVGRNGAGKTTTL 44
                56788888888999*********976 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00018
      AAA_29  12 fdghtieidlkgatlltGpsGsGKSTllDAiqalLvp 48 
                 f++  + +d+ + + + G +G+GK+Tll  +  lL p
  KIR61004.1 343 FTDVNVAVDRGSRVAILGLNGAGKTTLLRMLGGLLEP 379
                 6677788886669**************9666656555 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.056        29      16      36 ..      29      49 ..      18      54 .. 0.85
   2 !   15.3   0.1     2e-05      0.01      11      34 ..     350     373 ..     340     378 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.056
                EEEEEESTTSSHHHHHHHHHH CS
         Arf 16 rilllGLDnaGKtTilkklkl 36
                ri l+G  +aGKtT lk l  
  KIR61004.1 29 RIGLVGRNGAGKTTTLKVLAG 49
                78899***********99875 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2e-05
                 .TTEEEEEEEESTTSSHHHHHHHH CS
         Arf  11 kkkelrilllGLDnaGKtTilkkl 34 
                 +++  r+ +lGL +aGKtT+l +l
  KIR61004.1 350 VDRGSRVAILGLNGAGKTTLLRML 373
                 47889****************998 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0018      0.96       1      22 [.      29      50 ..      29      85 .. 0.83
   2 !    9.3   0.0    0.0023       1.2       1      21 [.     355     375 ..     355     424 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0018
                EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltge 22
                ++++vGr  +GK+t ++ l ge
  KIR61004.1 29 RIGLVGRNGAGKTTTLKVLAGE 50
                699****************986 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0023
                 EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg 21 
                 +vai+G   +GK+tL++ l g
  KIR61004.1 355 RVAILGLNGAGKTTLLRMLGG 375
                 69**************99855 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.011       5.8      10      30 ..      32      52 ..      28      89 .. 0.79
   2 ?    1.7   0.0      0.54   2.8e+02      58     128 ..     136     213 ..      93     220 .. 0.71
   3 !    9.3   0.1    0.0024       1.3       8      30 ..     356     378 ..     350     496 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.011
      AAA_22 10 vtGesGtGKTtllrrlleqld 30
                ++G  G+GKTt+l+ l+ + +
  KIR61004.1 32 LVGRNGAGKTTTLKVLAGEGQ 52
                79***********99887654 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.54
      AAA_22  58 rellralglelka...........erlsseellealeqalraravielliiDEaqh.lrseealeeLrsllnlsrkgvqliLv 128
                  +++ +lgl+  a           +r + e  + ++++a ++ +  ++l++DE  + l  ++ +++Lr +l    ++  li++
  KIR61004.1 136 ARICANLGLPDRAlaqtigtlsggQRRRVELARILFRDAGENGG--GILLLDEPTNhL-DADSITWLRGFLA--NHKGGLIVI 213
                 56677777777777777776665333334444444555555554..5******98889.9999999999888..565555554 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0024
      AAA_22   8 lvvtGesGtGKTtllrrlleqld 30 
                 +++ G  G+GKTtllr+l   l+
  KIR61004.1 356 VAILGLNGAGKTTLLRMLGGLLE 378
                 6899*************987773 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0078       4.1     103     135 ..      31      63 ..      18      66 .. 0.84
   2 !   10.5   0.1   0.00081      0.43     100     132 ..     354     386 ..     334     391 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0078
                  EEECSTTSSHHHHHHHHCTT-----S------- CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpelelktgevseklg 135
                   lvG  G+GK+t +++l++e +   g++ +++ 
   KIR61004.1  31 GLVGRNGAGKTTTLKVLAGEGQPYAGQIDRRSA 63 
                  599****************99888888877665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00081
                  SEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevse 132
                  + ++++G  G+GK+tL+ +l + le  tgev +
   KIR61004.1 354 SRVAILGLNGAGKTTLLRMLGGLLEPDTGEVHA 386
                  67899*****************99999999976 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0019         1       2      67 ..      30     100 ..      29     114 .. 0.60
   2 !    9.1   0.0    0.0026       1.4       1      20 [.     355     374 ..     355     426 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0019
      AAA_28   2 ivitGgestGKTtlleaLaargypvv....pEaareileeklakgedalpwv.edllafa..ervleeqleee 67 
                 i ++G  ++GKTt+l+ La +g p+     +++a  +l +  ++g   l+ + +d++  a    vl +q++e 
  KIR61004.1  30 IGLVGRNGAGKTTTLKVLAGEGQPYAgqidRRSAIGYLPQDPRTGD--LEVTgRDRVLSArgLDVLMAQMKEV 100
                 678999*************998886633345555555555544443..4444433332221245555555554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0026
      AAA_28   1 kivitGgestGKTtlleaLa 20 
                 +++i+G  ++GKTtll+ L 
  KIR61004.1 355 RVAILGLNGAGKTTLLRMLG 374
                 799**************997 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0069       3.6       4      22 ..      29      47 ..      27     108 .. 0.85
   2 !    8.5   0.0    0.0029       1.5       3      24 ..     354     374 ..     352     392 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0069
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                +i ++G +g+GKTt++k l
  KIR61004.1 29 RIGLVGRNGAGKTTTLKVL 47
                799************9977 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0029
      AAA_24   3 lkiliyGpsgiGKTtlakelgp 24 
                  +++i G +g+GKTtl+++l  
  KIR61004.1 354 SRVAILGLNGAGKTTLLRML-G 374
                 689**************999.3 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0      0.03        16       4      22 ..      32      50 ..      30     122 .. 0.90
   2 ?    1.7   0.1       0.5   2.6e+02     104     139 ..     248     282 ..     197     299 .. 0.78
   3 !    8.4   0.2    0.0042       2.2       4      19 ..     358     373 ..     356     502 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.03
      AAA_33  4 lvGlpGsGKstlaerllkk 22
                lvG +G+GK+t ++ l+ +
  KIR61004.1 32 LVGRNGAGKTTTLKVLAGE 50
                79**********9988865 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.5
      AAA_33 104 vetdeetlkeRlakRaangddrsevpeealdrqkar 139
                 +e+ e   ++R ++Ra++ ++++ + +++ d+++a+
  KIR61004.1 248 LEARETDERRRRRERANA-EKKAGALMAQADKMRAK 282
                 555555556666666665.44566777777777765 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0042
      AAA_33   4 lvGlpGsGKstlaerl 19 
                 + Gl+G+GK+tl++ l
  KIR61004.1 358 ILGLNGAGKTTLLRML 373
                 67**********9976 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.052        28       4      21 ..      31      48 ..      29      61 .. 0.84
   2 ?    2.0   0.0      0.25   1.3e+02     106     165 ..     224     299 ..     194     309 .. 0.78
   3 !    7.5   0.0    0.0052       2.7       4      20 ..     357     373 ..     355     418 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.052
                EEEESTTCCHHHHHHHHH CS
        cobW  4 vltGflGsGKTtLlnhll 21
                +l+G  G+GKTt l+ l 
  KIR61004.1 31 GLVGRNGAGKTTTLKVLA 48
                78999*******998765 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.25
                 HHHCCCECEEEEEEETTTH.................CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHH CS
        cobW 106 lksdltldavvavvDaknl................eaeeekieekaedqlaaadllvlnKtDlldeeallekleer 165
                 +++   lda+  vvD+ nl                 +e+ + e+ka+  +a ad +    t ++ +++++++ e+ 
  KIR61004.1 224 VNKVWFLDATRSVVDVYNLgwkaylearetderrrRRERANAEKKAGALMAQADKMRAKATKTVAAQNMARRAEKL 299
                 566778999999****999******999999988877778888888999999998877766666666665555555 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0052
                 EEEESTTCCHHHHHHHH CS
        cobW   4 vltGflGsGKTtLlnhl 20 
                  + G  G+GKTtLl+ l
  KIR61004.1 357 AILGLNGAGKTTLLRML 373
                 577999********976 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.2    0.0012      0.66       5      22 ..      31      48 ..      28      53 .. 0.88
   2 ?   -2.6   0.2       6.8   3.6e+03      28      48 ..     267     287 ..     262     305 .. 0.72
   3 !    7.8   0.1    0.0042       2.2       4      22 ..     356     374 ..     354     385 .. 0.81
   4 ?   -0.1   0.0       1.2   6.2e+02      37      54 ..     409     426 ..     391     453 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
                EEEESTTSSHHHHHHHHH CS
       SRP54  5 llvGlqGaGKTttlaKLa 22
                 lvG +GaGKTttl  La
  KIR61004.1 31 GLVGRNGAGKTTTLKVLA 48
                59***********99887 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.8
                 TTS-EEEEEESTSSTTHHHHH CS
       SRP54  28 egkkvllvaaDtfRaaAveQL 48 
                 ++  +l++ aD +Ra A++ +
  KIR61004.1 267 KKAGALMAQADKMRAKATKTV 287
                 455677888899998887654 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0042
                 EEEEESTTSSHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLa 22 
                 ++++Gl+GaGKTt l  L 
  KIR61004.1 356 VAILGLNGAGKTTLLRMLG 374
                 6799*********987776 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 1.2
                 ESTSSTTHHHHHHHHHHH CS
       SRP54  37 aDtfRaaAveQLktlaek 54 
                 +  +RaaA+eQ  t  +k
  KIR61004.1 409 LENMRAAAIEQTDTELRK 426
                 5679*******8875554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0052       2.7       3      22 ..      32      51 ..      30     110 .. 0.82
   2 ?   -0.6   0.0       3.1   1.6e+03      44      66 ..     165     186 ..     138     194 .. 0.85
   3 ?   -1.9   0.1       8.1   4.3e+03      77     110 ..     260     291 ..     252     312 .. 0.58
   4 ?    4.0   0.0      0.12        65       3      22 ..     358     377 ..     356     470 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0052
                EESSTTSSHHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavakel 22
                l+G  G GKT++ k +a e 
  KIR61004.1 32 LVGRNGAGKTTTLKVLAGEG 51
                89***************994 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 3.1
                 HHHHHHHHHHHHTSTSEEEEEET CS
         AAA  44 kkirelfkeakekakpsilfiDE 66 
                 +  r lf++a e+    il++DE
  KIR61004.1 165 ELARILFRDAGENG-GGILLLDE 186
                 56788999999997.8******9 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 8.1
                 CCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEES CS
         AAA  77 seseeeervvnqLlteldgvkkkeskvivigatn 110
                 +e+ ++e+ + +L+++ d+++ k   +  ++a n
  KIR61004.1 260 RERANAEKKAGALMAQADKMRAKA--TKTVAAQN 291
                 466666677777777777777752..33333333 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.12
                 EESSTTSSHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakel 22 
                 + G  G GKT+l + +   l
  KIR61004.1 358 ILGLNGAGKTTLLRMLGGLL 377
                 67999********9987766 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.035        18       3      21 ..      30      48 ..      28      69 .. 0.89
   2 !    8.8   0.1    0.0028       1.5       2      20 ..     355     373 ..     354     385 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.035
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                + l G++G GKTt l+ la
  KIR61004.1 30 IGLVGRNGAGKTTTLKVLA 48
                5689*********999876 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0028
                 CEEEEC-TTTCHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkl 20 
                  v++ G +G GKTtLl+ l
  KIR61004.1 355 RVAILGLNGAGKTTLLRML 373
                 689*************976 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0031       1.6      28      43 ..      32      47 ..      16      48 .. 0.84
   2 ?    5.0   0.0     0.032        17      27      48 ..     357     378 ..     343     427 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0031
      AAA_15 28 liGkNnsGKSsileal 43
                l+G+N++GK++ l++l
  KIR61004.1 32 LVGRNGAGKTTTLKVL 47
                9************998 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.032
      AAA_15  27 vliGkNnsGKSsilealdlFln 48 
                  + G N++GK+++l++l  +l+
  KIR61004.1 357 AILGLNGAGKTTLLRMLGGLLE 378
                 6889************976666 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0084       4.4      14      50 ..      12      48 ..       3      74 .. 0.86
   2 ?    6.8   0.1    0.0055       2.9      15      53 ..     339     377 ..     329     385 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0084
                HHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB 14 eakellerllakaGraqvvGltGvPGaGkstlvealg 50
                 a+ ll+  + +     ++Gl G  GaGk t+++ l+
  KIR61004.1 12 GARILLSDTTLRVQPGDRIGLVGRNGAGKTTTLKVLA 48
                57778888888888889**************998775 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0055
                 HHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHH CS
        MeaB  15 akellerllakaGraqvvGltGvPGaGkstlvealglel 53 
                 + e+++ +     r  +v + G+ GaGk tl+  lg  l
  KIR61004.1 339 SLEIFTDVNVAVDRGSRVAILGLNGAGKTTLLRMLGGLL 377
                 56788888888999******************9998766 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.028        15      23      38 ..      34      49 ..      27      62 .. 0.87
   2 ?   -0.7   0.3      0.79   4.2e+02     106     359 ..     261     294 ..     225     317 .. 0.42
   3 ?    7.8   0.0     0.002       1.1      21      39 ..     358     376 ..     340     400 .. 0.85
   4 ?   -2.0   0.0       1.9     1e+03     491     510 ..     436     455 ..     431     456 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.028
      AAA_13 23 GwNGaGKTtLSrllrs 38
                G+NGaGKTt  ++l+ 
  KIR61004.1 34 GRNGAGKTTTLKVLAG 49
                9********9888875 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.79
      AAA_13 106 kkleekleaaeaqlqkaekekkklekeledeawkkivkkknsalsealkglkyeekfkerllkelkkknrkaaellsdeelkakletvesenlpelapl 204
                 +                                                                                                  
  KIR61004.1 261 E-------------------------------------------------------------------------------------------------- 261
                 1.................................................................................................. PP

      AAA_13 205 slssidldalekaeilkkkvvgkdseieeLienldladWVkqGlelheassdtCpFCgqplpaerkaaLeahFddefeekqerLekliekveskksell 303
                                                                                                                    
  KIR61004.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

      AAA_13 304 eklkavsdeasensafeedkeelkaeaealeeqLkglqraleaKrkepfksveles 359
                                        +a+ae+ + +L +  +++ aK ++ ++  ++ +
  KIR61004.1 262 -----------------------RANAEKKAGALMAQADKMRAKATKTVAAQNMAR 294
                 .......................112222222222222222222222222222211 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.002
      AAA_13  21 iYGwNGaGKTtLSrllrsl 39 
                 i G NGaGKTtL r+l  l
  KIR61004.1 358 ILGLNGAGKTTLLRMLGGL 376
                 88**********9999776 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1.9
      AAA_13 491 kggsqaaetLSeGEktaIaf 510
                 ++ +++a+ LS GEkt  a+
  KIR61004.1 436 EDVDKPAGVLSGGEKTRLAL 455
                 677899**********8775 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2    0.0037         2      23      39 ..      32      48 ..      23      58 .. 0.88
   2 ?    8.9   0.0    0.0021       1.1      20      49 ..     355     384 ..     346     498 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0037
      AAA_30 23 ltGpAGtGKttalkalr 39
                l+G+ G+GKtt+lk+l+
  KIR61004.1 32 LVGRNGAGKTTTLKVLA 48
                89************986 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0021
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrv 49 
                  +++ G  G+GKtt+l+ l  ++e + g+v
  KIR61004.1 355 RVAILGLNGAGKTTLLRMLGGLLEPDTGEV 384
                 56789************9988888775444 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0048       2.5      20      43 ..      31      54 ..      17      59 .. 0.85
   2 ?    4.0   0.0     0.049        26      21      40 ..     358     377 ..     341     386 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0048
  Zeta_toxin 20 llgGqpGAGKselaellkdelerq 43
                 l+G  GAGK+++++ l+ e +++
  KIR61004.1 31 GLVGRNGAGKTTTLKVLAGEGQPY 54
                589*************99998755 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.049
  Zeta_toxin  21 lgGqpGAGKselaellkdel 40 
                 + G  GAGK++l+++l   l
  KIR61004.1 358 ILGLNGAGKTTLLRMLGGLL 377
                 45889********9986655 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.049        26      31      45 ..      32      46 ..      16      49 .. 0.71
   2 ?   -2.3   0.4       5.2   2.7e+03      93      98 ..     271     276 ..     239     307 .. 0.50
   3 ?    9.0   0.0    0.0018      0.94      14      87 ..     343     407 ..     335     433 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.049
      AAA_27 31 iyGpNEAGKstalrA 45
                ++G N AGK+t+l+ 
  KIR61004.1 32 LVGRNGAGKTTTLKV 46
                47**********985 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.2
      AAA_27  93 tlldad 98 
                 +l++++
  KIR61004.1 271 ALMAQA 276
                 122222 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0018
      AAA_27  14 ftdrsldfsaeeadlhliyGpNEAGKstalrAisdllfGipertkdnflhdakkLrigavleeadgeelefaRr 87 
                 ftd +++ ++  ++   i+G N AGK+t+lr +  ll     + +   +h+ + Lr+g   +e+  e+l+++R 
  KIR61004.1 343 FTDVNVAVDR-GSR-VAILGLNGAGKTTLLRMLGGLL-----EPDTGEVHAGHGLRLGYYAQEH--ETLDVERT 407
                 6777777763.333.4589************999887.....5566778888888888777444..44666665 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.026        14       2      21 ..      30      49 ..      29     107 .. 0.84
   2 ?    6.4   0.0     0.015       8.1       2      23 ..     356     377 ..     355     413 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.026
        MobB  2 lgivgksgsGKTtLleklip 21
                +g+vg++g+GKTt l+ l  
  KIR61004.1 30 IGLVGRNGAGKTTTLKVLAG 49
                799**********9998765 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.015
        MobB   2 lgivgksgsGKTtLleklipel 23 
                 ++i g +g+GKTtLl  l   l
  KIR61004.1 356 VAILGLNGAGKTTLLRMLGGLL 377
                 6899***********9875555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1      0.02        10      19      40 ..      27      48 ..       8      54 .. 0.77
   2 ?    6.2   0.1     0.019        10      19      41 ..     353     375 ..     326     386 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.02
                TEEEEEEESTTSSHHHHHHHHH CS
        TsaE 19 gdvilLeGdLGaGKTtlvrgla 40
                gd i L G  GaGKTt  + la
  KIR61004.1 27 GDRIGLVGRNGAGKTTTLKVLA 48
                67799***********999876 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.019
                 TEEEEEEESTTSSHHHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglak 41 
                 g+ +++ G  GaGKTtl r l  
  KIR61004.1 353 GSRVAILGLNGAGKTTLLRMLGG 375
                 4458888999********99865 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.4    0.0037       1.9      13      37 ..      23      47 ..      19      48 .. 0.86
   2 ?   -2.8   2.7       1.5   7.8e+02     644     677 ..     256     289 ..     243     315 .. 0.38
   3 ?   11.9   0.2   5.6e-05     0.029      17      37 ..     353     373 ..     345     374 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0037
     DUF3584 13 eldldghtnieGtNaaGKTtLlrLi 37
                ++++ ++  ++G N+aGKTt+l+++
  KIR61004.1 23 RVQPGDRIGLVGRNGAGKTTTLKVL 47
                6778889999***********9875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.5
     DUF3584 644 aeaatalknardtlerlqnekesekdklekaiae 677
                  +++++  na+++ + l  + ++ + k +k +a+
  KIR61004.1 256 RRRRRERANAEKKAGALMAQADKMRAKATKTVAA 289
                 2222222222222222222222222222222111 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 5.6e-05
     DUF3584  17 dghtnieGtNaaGKTtLlrLi 37 
                   ++ i G N+aGKTtLlr++
  KIR61004.1 353 GSRVAILGLNGAGKTTLLRML 373
                 56899**************86 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2     0.044        23      25      44 ..      29      48 ..      27      50 .. 0.89
   2 ?    7.2   0.1     0.009       4.8      12      43 ..     340     373 ..     331     379 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.044
       DUF87 25 HlAilgsTGsGKSntvavLl 44
                +++ +g+ G+GK++t +vL 
  KIR61004.1 29 RIGLVGRNGAGKTTTLKVLA 48
                57899*************96 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.009
       DUF87  12 vpvyldlnklvtr..HlAilgsTGsGKSntvavL 43 
                 +++  d+n +v r  ++Ailg  G+GK+++ + L
  KIR61004.1 340 LEIFTDVNVAVDRgsRVAILGLNGAGKTTLLRML 373
                 56666777777654499************99877 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.013       6.8       3      26 ..      29      52 ..      27      57 .. 0.85
   2 ?    4.9   0.2     0.037        19       3      23 ..     355     375 ..     353     378 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.013
   PduV-EutP  3 killiGkvgsGKttLtqalkgeel 26
                +i l+G+ g+GKtt  + l ge  
  KIR61004.1 29 RIGLVGRNGAGKTTTLKVLAGEGQ 52
                7889***********999999865 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.037
   PduV-EutP   3 killiGkvgsGKttLtqalkg 23 
                 ++ ++G  g+GKttL + l g
  KIR61004.1 355 RVAILGLNGAGKTTLLRMLGG 375
                 7899***********998865 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.11        60       6      35 ..      19      48 ..      13      66 .. 0.87
   2 ?    6.8   0.0    0.0089       4.7       6      35 ..     345     374 ..     343     416 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.11
                 HHHS-EBTT-EEEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  6 DalfpivqGqrtlipgafgvGktvisqsls 35
                 D+ + +  G r++++g +g Gkt+ ++ l+
   KIR61004.1 19 DTTLRVQPGDRIGLVGRNGAGKTTTLKVLA 48
                 56666778****************998776 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0089
                  HHHS-EBTT-EEEEEESTTSSHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   6 DalfpivqGqrtlipgafgvGktvisqsls 35 
                  D+ + + +G r++i+g +g Gkt+++++l 
   KIR61004.1 345 DVNVAVDRGSRVAILGLNGAGKTTLLRMLG 374
                  66678889*****************99885 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.54   2.8e+02      25      51 ..      27      53 ..      18      58 .. 0.79
   2 ?    8.0   0.0    0.0021       1.1      21      65 ..     349     398 ..     338     411 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.54
        DLIC 25 gksvlvlGedgsGkttliaklqGveee 51
                g  + ++G +g+Gktt +  l G  ++
  KIR61004.1 27 GDRIGLVGRNGAGKTTTLKVLAGEGQP 53
                5567799*********99999886665 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0021
        DLIC  21 klPsgksvlvlGedgsGkttliaklqGveee.....kkGrGleylyldvk 65 
                  +  g  v +lG +g+Gkttl+  l G+ e+     + G+Gl   y   +
  KIR61004.1 349 AVDRGSRVAILGLNGAGKTTLLRMLGGLLEPdtgevHAGHGLRLGYYAQE 398
                 556678899******************87661111144566666666555 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.4      0.19        99       3      17 ..      34      48 ..      33      52 .. 0.89
   2 ?    6.6   0.1      0.01       5.4       3      21 ..     360     378 ..     358     388 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.19
                     ESTTSSHHHHHHHHH CS
  Thymidylate_kin  3 GlDGaGKttqaellk 17
                     G +GaGKtt ++ l+
       KIR61004.1 34 GRNGAGKTTTLKVLA 48
                     779*******99986 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.01
                      ESTTSSHHHHHHHHHHHHH CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlk 21 
                      Gl+GaGKtt +++l   l+
       KIR61004.1 360 GLNGAGKTTLLRMLGGLLE 378
                      9**********99977666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1054  (0.0587874); expected 358.6 (0.02)
Passed bias filter:                      745  (0.0415528); expected 358.6 (0.02)
Passed Vit filter:                       113  (0.00630264); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.46
# Mc/sec: 3452.19
//
Query:       KIR61005.1  [L=75]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 591.04
//
Query:       KIR61006.1  [L=255]
Description: enoyl-CoA hydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-41  140.6   0.1    8.8e-41  139.9   0.1    1.3  1  ECH_1     Enoyl-CoA hydratase/isomerase
    1.3e-24   87.4   0.1    1.8e-24   86.9   0.1    1.2  1  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.9   0.1   9.8e-45   8.8e-41       5     224 ..      15     243 ..      11     250 .. 0.88

  Alignments for each domain:
  == domain 1  score: 139.9 bits;  conditional E-value: 9.8e-45
                 TEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHC....HHHHHHHC.......CHHHHHHHHHHSSSEEE CS
       ECH_1   5 gvaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeek....akqallke.......evlelwtklytvpkpvi 92 
                  va ++l rP+++Na ++++   + +   +l  d  vr+vv+ G ++aF+aG+dl  + + ++    + ++l+++        +++ +t l   +++ +
  KIR61006.1  15 PVATVTLCRPDVLNAQTPAMWRAMSDFSRDLPGD--VRVVVVRGEGRAFSAGLDLSVAGASGPgsfaELATLPEQecadriaDFQAGFTWLHRPDVVSV 111
                 599*******************************..*********************9999887443222222221111111466777778888999** PP

                 EEE-SEEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHH CS
       ECH_1  93 aavnGaaigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaekla 191
                 aav+G+aig+G++lalacD++++a +a+ + +e+ lGl+p+  gt++l+  vG ++A ei+ +g+++ a+ea + Gl   vvp+++l  + + l + l+
  KIR61006.1 112 AAVQGHAIGAGFQLALACDLRVLATDAKLSMAEVTLGLVPDLAGTKRLVELVGYARALEICATGRRMDAAEADRLGLATLVVPNAELDATVRDLTAGLL 210
                 *************************************************************************************************** PP

                 HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       ECH_1 192 ekspaalrqlkealnakledalaeqleaeaklf 224
                  ++++a++ +k+ l  ++ +  aeq  ae++ +
  KIR61006.1 211 AHPRDAVVEIKALLAGAAGRSHAEQQRAEREAQ 243
                 ************999999988888877777655 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.1     2e-28   1.8e-24       2     211 ..      17     236 ..      16     251 .. 0.81

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 2e-28
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS.......-THH.HHHHHHHHHHHHHHHC-SS-EEE CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakeg.......kkee.eeffreeYklnyliatypkpvva 92 
                 +++tL rp+ lNa + +m ra+++  ++     +v++vv++g+g +af+AG D+     +   +        ++e ++ +++  +    +++     va
  KIR61006.1  17 ATVTLCRPDVLNAQTPAMWRAMSDFSRDLP--GDVRVVVVRGEG-RAFSAGLDLSVAGASGPGSfaelatlPEQEcADRIADFQAGFTWLHRPDVVSVA 112
                 689***********************9985..56899*****88.*********9988888877777766522334666666666677888888999** PP

                 EE-BEEETHHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT... CS
       ECH_2  93 lmdGivmGgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpseklealeeaLaeless 190
                  ++G ++G G  l++ + +rv   +++++m E+++Gl+PD +g+  L  l g + +l ++ TG+r+++a+a  +glat +vp+++l+a  ++L++   +
  KIR61006.1 113 AVQGHAIGAGFQLALACDLRVLATDAKLSMAEVTLGLVPDLAGTKRLVELVGyARALEICATGRRMDAAEADRLGLATLVVPNAELDATVRDLTAGLLA 211
                 *************************************************988577999****************************9999888876555 PP

                 .........--------......-- CS
       ECH_2 191 d....eeaveevleelaeeaeeeee 211
                 +      +++++l+  a ++++e++
  KIR61006.1 212 HprdaVVEIKALLAGAAGRSHAEQQ 236
                 4433444555555555544444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1912.24
//
Query:       KIR61007.1  [L=659]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-41  141.4   9.9    5.4e-41  141.1   9.9    1.1  1  ABC_membrane    ABC transporter transmembrane region
    7.7e-34  117.2   0.0    2.1e-33  115.7   0.0    1.8  1  ABC_tran        ABC transporter
    1.4e-05   24.6   0.2    0.00072   19.1   0.0    2.3  2  SMC_N           RecF/RecN/SMC N terminal domain
     0.0011   18.2   9.5      0.003   16.9   9.5    1.7  1  ABC_membrane_3  ABC transporter transmembrane region
     0.0023   17.7   0.0     0.0056   16.4   0.0    1.6  1  AAA_29          P-loop containing region of AAA domain
     0.0023   17.7   0.1     0.0076   16.0   0.1    1.9  1  AAA_30          AAA domain
     0.0028   18.0   0.4     0.0067   16.8   0.4    1.7  1  AAA_16          AAA ATPase domain
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.043   13.7   0.0    1.5  1  RsgA_GTPase     RsgA GTPase
      0.022   14.5   0.0       0.23   11.2   0.0    2.2  2  IstB_IS21       IstB-like ATP binding protein
      0.025   14.4   0.0      0.052   13.3   0.0    1.5  1  DEAD            DEAD/DEAH box helicase
       0.03   14.1   0.2      0.067   12.9   0.0    1.7  2  Cytidylate_kin  Cytidylate kinase
      0.032   13.6   1.9       0.08   12.3   1.9    1.5  1  ABC_membrane_2  ABC transporter transmembrane region 2
      0.051   13.8   0.6        0.3   11.4   0.4    2.3  1  AAA_22          AAA domain
       0.12   12.5   0.0        0.3   11.3   0.0    1.7  1  AAA_33          AAA domain
       0.76   10.1   5.8        0.6   10.4   0.2    3.4  2  SbcCD_C         Putative exonuclease SbcCD, C subunit
          1    9.6   8.6      0.064   13.4   0.8    2.7  3  AWPM-19         AWPM-19-like family


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   9.9   4.8e-44   5.4e-41       3     274 .]      47     320 ..      45     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 141.1 bits;  conditional E-value: 4.8e-44
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHH CS
  ABC_membrane   3 liillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGe 99 
                   + +++ ++a v+ +++p++ g +++ ++  g    +++++++l++++l++a+++++l+q ++   +ge ++ +lr+++++++ r+p++ff ++++G 
    KIR61007.1  47 VFLVTVVIAAVIGVATPVLAGDVINAISRGGAEAGSTVVRLALVIAVLAVADALFSLAQRWYSARIGEGIILDLRTRVYDHVQRMPLQFFTRTQTGA 143
                   678999**********************975555579************************************************************ PP

                   HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HTHHHHH CS
  ABC_membrane 100 llsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEsl..sgirtVk 194
                   l+srl+ndv   + +++++l+ ++ +++++v + +vm++l+w++t++ l++lp++i+ +  ++++l +++++  + +a++++ ++E +   g   Vk
    KIR61007.1 144 LVSRLNNDVMGAQRAFTSTLSGVVSNVIQLVLTAGVMLTLSWQITVLSLVMLPIFIVPARRVGRRLADITRESYNLNANMNATMTERFgvAGALLVK 240
                   **************************************************************************************96337****** PP

                   HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 195 afgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                   +fg+ e + ++f    e+++ +gi++a +++ +++++ l+++l++al++ +G++l  +g +s g++v++ +l++ l g+l
    KIR61007.1 241 LFGAPEVEARRFAGRAERVRDIGIQSAMYSRTFFVAMLLVASLAQALTYGLGGWLAVTGSVSAGTVVTLALLLTRLYGPL 320
                   ***********************************************************************999888775 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.0   1.9e-36   2.1e-33       1     137 []     401     550 ..     401     550 .. 0.90

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 1.9e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......esdeeiekalskl 92 
                 l+ vs+ +++g+++a+vG++GaGKStL +l+ + ++ t G++l+ g d+++ +l slr eigv++q+++lf e+ ++en       + d+ei +al+  
  KIR61007.1 401 LRGVSFAVEPGQMIALVGPSGAGKSTLSMLIPRVYDVTDGQVLVGGVDVRDATLASLRDEIGVVTQDSHLFHET-IAENlryakpdATDDEIWAALAGA 498
                 678**********************************************************************9.99999***9996666655555555 PP

                 TTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  93 glke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +  +         dt+v+++++ +SgG+kqr+a+ar+llk+p++++lDE+ta
  KIR61007.1 499 QVADlvrslpdGLDTTVGERGYRFSGGEKQRIAIARLLLKAPSIVILDEATA 550
                 55555555555679999*********************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.051        57      25      40 ..     412     427 ..     401     432 .. 0.85
   2 !   19.1   0.0   6.4e-07   0.00072     136     209 ..     521     590 ..     434     596 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.051
                 SEEEEEESTTSSHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnl 40 
                 ++ a+vGp G+GKs l
  KIR61007.1 412 QMIALVGPSGAGKSTL 427
                 5789**********87 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 6.4e-07
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklv 209
                  +SgGek+ +a+a l      k  ++++lDe  a+LD +  ++v + l  + +    +vi++r  ++++ad+++
  KIR61007.1 521 RFSGGEKQRIAIARL----LLKAPSIVILDEATAHLDSESEAAVQRALAVALTGRTALVIAHRLSTVRDADQIL 590
                 58******9999877....478889************************9999*****************9986 PP

>> ABC_membrane_3  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   9.5   2.6e-06     0.003       5     161 ..      38     208 ..      34     233 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.6e-06
  ABC_membrane_3   5 akkarkrlavtfllvlaenvlllayPlligfaiddllagkvaqlliyalvvllliligaar.......rivDTRaysrIyaelavevvleqrqqd 92 
                     a+ +r  ++v ++ v++ +v+ +a P+l+g  i+++ +g + +  +++ + l++ ++++a+       r +  R+   I+ +l + v+ + ++  
      KIR61007.1  38 ARPYRRDIVVFLVTVVIAAVIGVATPVLAGDVINAISRGGAEAGSTVVRLALVIAVLAVADalfslaqRWYSARIGEGIILDLRTRVYDHVQRMP 132
                     6788999********************************9999888888888888888764332222288888888899*******998877766 PP

  ABC_membrane_3  93 ldtSkva...arlalsrelv....dFlEkhlPtlitavvsivgavvmllvlefslglsallillllllllprFarr 161
                     l+  +++   a++++ ++ v      + + l  ++++v+++v ++ ++l+l+ ++++++l++l ++++ + r  rr
      KIR61007.1 133 LQFFTRTqtgALVSRLNNDVmgaqRAFTSTLSGVVSNVIQLVLTAGVMLTLSWQITVLSLVMLPIFIVPARRVGRR 208
                     6555444111444433222212224688899999********9999999999999999999998888766554443 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     5e-06    0.0056       7      38 ..     396     427 ..     393     429 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5e-06
      AAA_29   7 vNWgtfdghtieidlkgatlltGpsGsGKSTl 38 
                 vN   ++g ++ +++ +++ l+GpsG+GKSTl
  KIR61007.1 396 VNEPVLRGVSFAVEPGQMIALVGPSGAGKSTL 427
                 67777888899999989**************8 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   6.8e-06    0.0076      14     100 ..     407     551 ..     403     577 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.8e-06
      AAA_30  14 ltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkv..Laeelgieastiakllkrlk............................. 81 
                 + ++ ++ +l+Gp G+GK+t+   + ++++   g+v++     + A    L++e+g+ ++  + + ++ +                             
  KIR61007.1 407 AVEPGQMIALVGPSGAGKSTLSMLIPRVYDVTDGQVLVGGVDVRDATLasLRDEIGVVTQDSHLFHETIAenlryakpdatddeiwaalagaqvadlvr 505
                 556678999***********************8888877766666654349999999777666666555566677778888888888888888888888 PP

      AAA_30  82 ...........................grarlepgtllivDEagmv 100
                                            +r  l++ +++i DEa   
  KIR61007.1 506 slpdgldttvgergyrfsggekqriaiARLLLKAPSIVILDEATAH 551
                 8888888888888888888888888876667777788888888655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.4     6e-06    0.0067      24     156 ..     410     561 ..     387     594 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6e-06
      AAA_16  24 p.elvllsGesGvGKsslvrellralekdggiflrgkcdqlesa.ipy...........sa.laqalareellrqlldeaesaeleawrekleeala.. 106
                 p +++ l+G+sG GKs+l   ++r +  ++g +l g  d  ++  +             s+ + +++ +e l  +  d+   ++ e w++   +++a  
  KIR61007.1 410 PgQMIALVGPSGAGKSTLSMLIPRVYDVTDGQVLVGGVDVRDATlA-SlrdeigvvtqdSHlFHETI-AENLRYAKPDA---TDDEIWAALAGAQVAdl 503
                 3689*******************98888889999999998833321.12332222222222333333.22333333333...33333333333322233 PP

      AAA_16 107 .......avpelagaea.............srllellkrllallsrderplvlvlDdlq.wadeaslqlla 156
                                               +  + +++rll      + p +++lD++   +d++s ++ +
  KIR61007.1 504 vrslpdgL--------DttvgergyrfsggEKQRIAIARLL----L-KAPSIVILDEATaHLDSESEAAVQ 561
                 33333220........1334444443322222222222333....1.225677777666556665555543 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.9e-05     0.043      97     117 ..     408     429 ..     384     445 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.9e-05
                  CTT.SEEEEECSTTSSHHHHHH CS
  RsgA_GTPase  97 lkd.ktsvlvGqSGvGKStLin 117
                  ++  ++++lvG+SG+GKStL  
   KIR61007.1 408 VEPgQMIALVGPSGAGKSTLSM 429
                  554499*************964 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00021      0.23      29      65 ..     391     429 ..     367     441 .. 0.78
   2 ?    0.3   0.1      0.46   5.2e+02     106     149 ..     537     580 ..     524     591 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
   IstB_IS21  29 sldkrkvk.eLatlsf.iekkenivllGpsGvGKshlai 65 
                  ld++  +  L++ sf +e  + i+l+GpsG+GKs l++
  KIR61007.1 391 TLDRTVNEpVLRGVSFaVEPGQMIALVGPSGAGKSTLSM 429
                 5555554446788998678899*************9986 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.46
   IstB_IS21 106 llkvdllilDdlgllpldqaeaellfeviekryerrsiiitsnl 149
                 l +++++ilD+   +  ++ ea++   +  +  +r++++i+  l
  KIR61007.1 537 LKAPSIVILDEATAHLDSESEAAVQRALAVALTGRTALVIAHRL 580
                 4556999***9887766666666665666677788888887665 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.7e-05     0.052      14     146 ..     411     564 ..     401     576 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.7e-05
                 TCEEEEEESTTSSH.HHHHHHHHHHHHHHS..............TTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHT CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  14 ggdvlvaaeTGsGK.Tlaflipvlqivyet..............kgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldn 96 
                 g+ + + ++ G+GK Tl +lip +  v++                + +    ++   ++   e +++nl+  k   +d ++ + + g +  d ++ l  
  KIR61007.1 411 GQMIALVGPSGAGKsTLSMLIPRVYDVTDGqvlvggvdvrdatlASLRDEIGVVTQDSHLFHETIAENLRYAKPDaTDDEIWAALAGAQVADLVRSLPD 509
                 67788999******5566999999999877999999998888875566677888888888899999999998887566666688999999*******99 PP

                 TCSEEEEEHHHHHHHHHCTSSH.....CTTEEEEEEETHHHHHHTTTHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  97 gvdivvgtpgrlddllstgkln.....lsqvrflVlDEadrlldqgfsdfinril 146
                 g+d +vg  g  ++  +++++      l+  ++++lDEa   ld++ +  ++r l
  KIR61007.1 510 GLDTTVGERGYRFSGGEKQRIAiarllLKAPSIVILDEATAHLDSESEAAVQRAL 564
                 9********9888877666655455659999*************99998888865 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       4.3   4.9e+03     141     167 ..     202     227 ..     197     230 .. 0.69
   2 ?   12.9   0.0     6e-05     0.067       1      52 [.     414     468 ..     414     507 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.3
                     HHHHHHHHHHHHHTT----HHHHHHHH CS
  Cytidylate_kin 141 eeRakRRlkqlkakgtsvsleellaei 167
                       R+ RRl++ ++++++ + +++ a++
      KIR61007.1 202 ARRVGRRLADITRESYNLN-ANMNATM 227
                     6799999999988877744.3445555 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6e-05
                     EEEE-STTSSHHHHHHHHHHHHT-...EEEEHHHHHHHHHHHHHHTT--TT-HHH CS
  Cytidylate_kin   1 iaiDGPagsGKssvaralaeklgl...kyldtgalYRalalaalrrkvdlldeaa 52 
                     ia+ GP+g+GKs+++ ++ +  ++   ++l  g   R  +la+lr ++ ++ +++
      KIR61007.1 414 IALVGPSGAGKSTLSMLIPRVYDVtdgQVLVGGVDVRDATLASLRDEIGVVTQDS 468
                     8999************998877653337999999999999999999887655443 PP

>> ABC_membrane_2  ABC transporter transmembrane region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.9   7.2e-05      0.08      17     195 ..      45     222 ..      41     228 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.2e-05
  ABC_membrane_2  17 llvlllllvlrtllsvlvaqldgklvkalva...knvraFvlsllkfallavpasfvnsalkYltqkL....alafRkrLtkhllseYlknrtyY 104
                     ++v l+++v++ ++ v    l+g++ +a+ +   +   + v+  l++a+lav+ ++   a++++++++    +l  R+r+ +h+ ++ l+   ++
      KIR61007.1  45 IVVFLVTVVIAAVIGVATPVLAGDVINAISRggaEAGSTVVRLALVIAVLAVADALFSLAQRWYSARIgegiILDLRTRVYDHVQRMPLQ---FF 136
                     67889999999******************99444555678888899999999999*********99863333799999999999999887...56 PP

  ABC_membrane_2 105 kvsnlderidnpDqritqDvekFtsslssLlsglvkpildvilftfiLwslsgtlgllllllyvllatvilriigpplgklvaeeeklege 195
                     +  + +        r+ +Dv    ++ +s lsg+v+ +++++l+   + +ls + ++ l l+++ +  v  r++g++l++++ e+ +l+++
      KIR61007.1 137 TRTQTGAL----VSRLNNDVMGAQRAFTSTLSGVVSNVIQLVLTAGVMLTLSWQITV-LSLVMLPIFIVPARRVGRRLADITRESYNLNAN 222
                     55555553....359999*************************99999999999888.5556666778899**************999997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   0.00027       0.3       5      22 ..     411     428 ..     408     577 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00027
      AAA_22   5 agilvvtGesGtGKTtll 22 
                  ++++++G+sG+GK+tl 
  KIR61007.1 411 GQMIALVGPSGAGKSTLS 428
                 689*************86 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00027       0.3       1      17 [.     413     429 ..     413     483 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00027
      AAA_33   1 lvllvGlpGsGKstlae 17 
                 ++ lvG++G+GKstl+ 
  KIR61007.1 413 MIALVGPSGAGKSTLSM 429
                 5789***********96 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00054       0.6      62      87 ..     538     563 ..     502     566 .. 0.71
   2 ?   -3.2   0.0       9.3     1e+04      61      72 ..     584     595 ..     571     596 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00054
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllel 87 
                 +a+++v+LDEA + lD+es a++ ++
  KIR61007.1 538 KAPSIVILDEATAHLDSESEAAVQRA 563
                 4699**************98887666 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 9.3
     SbcCD_C  61 epalrlvfLDEA 72 
                 ++a ++++LDE+
  KIR61007.1 584 RDADQILVLDEG 595
                 55668999**97 PP

>> AWPM-19  AWPM-19-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.8   5.7e-05     0.064      12     101 ..       5      96 ..       2     113 .. 0.76
   2 ?   -0.2   0.2      0.91     1e+03      61     101 ..     151     192 ..     122     195 .. 0.68
   3 ?   -2.0   0.1       3.3   3.7e+03      41      63 ..     262     284 ..     244     313 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.7e-05
     AWPM-19  12 glagwalnkaidrsveiasalslkaklsp.iyfpvgnaa.tgffvifallagvvGvasklaglnhvrawraesLaaaassalvawaltlLAm 101
                 g+agw++ +++ ++ e++++     + +  + f         +f++ +++a+v+Gva+ + +   ++a +  + +a +++  +a  + +LA+
  KIR61007.1   5 GMAGWSMIRSMRNQDEVSAHRLSRGTARRiVEFARPYRRdIVVFLVTVVIAAVIGVATPVLAGDVINAISRGGAEAGSTVVRLALVIAVLAV 96 
                 68999999999976655544333333333133333333335569999*********************999999999999999999999996 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.91
     AWPM-19  61 gvvGvasklaglnh.vrawraesLaaaassalvawaltlLAm 101
                  v+G+  +++++   v +   + + +a  + +++w +t+L++
  KIR61007.1 151 DVMGAQRAFTSTLSgVVSNVIQLVLTAGVMLTLSWQITVLSL 192
                 566666655554440344444555567777789999999986 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.3
     AWPM-19  41 iyfpvgnaatgffvifallagvv 63 
                 i ++ +  + +ffv + l+a++ 
  KIR61007.1 262 IGIQSAMYSRTFFVAMLLVASLA 284
                 55566666667777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 4376.97
//
Query:       KIR61008.1  [L=253]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-41  142.3   0.1    2.1e-41  142.0   0.1    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    9.1e-30  103.6   0.0    1.2e-29  103.2   0.0    1.1  1  adh_short        short chain dehydrogenase
    3.8e-08   33.4   0.0    6.7e-08   32.6   0.0    1.4  1  KR               KR domain
  ------ inclusion threshold ------
        1.5    9.3  11.3        1.7    9.0   5.9    2.5  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.0   0.1   4.7e-45   2.1e-41       1     232 [.      14     248 ..      14     249 .. 0.94

  Alignments for each domain:
  == domain 1  score: 142.0 bits;  conditional E-value: 4.7e-45
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga +g+G+a+A+ l + Ga+vv++ +  e+ +++v++l    g+++ l+ D +d+++ ++lv++++e+fg+lD+++ ++g  p+  g ++ t+++++
    KIR61008.1  14 GASRGLGFATAECLVADGARVVVSARAPEQvAEAVRRLGGP-GRAIgLAGDLSDPATPQRLVAAAREQFGRLDGALVSVGGPPP--GTAAGTTDAQW 107
                   899**************************966666666654.34457*************************************..*********** PP

                   HHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT....HHHH CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg....fdel 188
                   ++ +++ + +++++a+ +++++++gg+i  + s++a+  +++  + +  + +l ++++ +A e+gp+g+Rv    pg i T+ ++++      +++ 
    KIR61008.1 108 RESFETVFLGTVRTARTVAEALTDGGAIGLVLSTSARAPLAGLGISNGLRPGLAGVAKDMADEYGPRGVRVLGLLPGRIMTDRNRQLLAasgdAERA 204
                   *********************************************************************************9988765433347889 PP

                   HHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 189 leelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                   ++e+ea +pl+r+g+p e +++a+f +s++a y tG tl vDgG
    KIR61008.1 205 RAEAEAGIPLRRIGEPAEFGRVAAFVLSPAAGYLTGITLPVDGG 248
                   ******************************************** PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   2.6e-33   1.2e-29       2     190 ..       9     194 ..       8     198 .. 0.97

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 2.6e-33
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 v + tGas+G+G a+a+ l+++Ga+vvv +r +e+++e++  l+    +a+ +++D++d +  ++lv++a++++g+ld     +G   +g+++ +++++
  KIR61008.1   9 VYVLTGASRGLGFATAECLVADGARVVVSARAPEQVAEAVRRLGG-PGRAIGLAGDLSDPATPQRLVAAAREQFGRLDGALVSVGGPPPGTAAGTTDAQ 106
                 6689****************************************9.589******************************9999***9************ PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                 w++++e+ + g++ ++r+v++a+    +G+I  v S+ ++ p+ag+        ++ag ++ +a+e+ p+g+rv ++ PG + Td +++l
  KIR61008.1 107 WRESFETVFLGTVRTARTVAEALT--DGGAIGLVLSTSARAPLAGLGISNGLRPGLAGVAKDMADEYGPRGVRVLGLLPGRIMTDRNRQL 194
                 **********************87..99*********************************************************98875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.5e-11   6.7e-08       2     117 ..       9     119 ..       8     151 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.5e-11
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 +y++tG+  gLG ++a+ l+++gar  v+ +R     e+ ++ +++l   g  + + a D+sd++  ++l+++++++++++ G + + g    ++ + +
  KIR61008.1   9 VYVLTGASRGLGFATAECLVADGARV-VVSARA---PEQVAEAVRRLGGPGRAIGL-AGDLSDPATPQRLVAAAREQFGRLDGALVSVGGPPPGTAAGT 102
                 7***********************94.444555...4677779********99975.78******************************9999999999 PP

                 -HHHHHHHHTTTTHHHH CS
          KR 101 taedleqvlapKvkGaw 117
                 t++++++ ++  + G+ 
  KIR61008.1 103 TDAQWRESFETVFLGTV 119
                 99998887766555544 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.9   0.00039       1.7      10      67 ..      23      81 ..      21     157 .. 0.79
   2 ?    3.1   0.2     0.026   1.2e+02      24      51 ..     195     223 ..     158     239 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00039
  Glyco_trans_4_4 10 laraLaarGheVtvltpapapgapeleedgvrvhrlpvprrpspladlaal.ralrrll 67
                     +a+ L+a+G++V+v ++ap ++a+++++ g + + + +    s +a++++l +a+r+++
       KIR61008.1 23 TAECLVADGARVVVSARAPEQVAEAVRRLGGPGRAIGLAGDLSDPATPQRLvAAAREQF 81
                     699*********************99999999999999988877777765524444444 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.026
  Glyco_trans_4_4  24 lt.papapgapeleedgvrvhrlpvprrp 51 
                      l+ +++a++a+++ e+g++++r+  p++ 
       KIR61008.1 195 LAaSGDAERARAEAEAGIPLRRIGEPAEF 223
                      2235556667778899******9888663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1724.58
//
Query:       KIR61009.1  [L=310]
Description: hypothetical protein TK50_24795 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.099   12.5   0.9       0.18   11.7   0.9    1.4  1  Flg_hook  Flagellar hook-length control protein FliK
       0.24    9.0   0.1       0.32    8.6   0.1    1.1  1  ACR_tran  AcrB/AcrD/AcrF family


Domain annotation for each model (and alignments):
>> Flg_hook  Flagellar hook-length control protein FliK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.9   2.1e-05      0.18      53      73 ..     125     145 ..     122     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.1e-05
                 HHHTHHHHHHHHHCCTTCCEE CS
    Flg_hook  53 LeqnlprLreaLaaaGlkldd 73 
                 ++q+l++Lr+ L+++Gl l+ 
  KIR61009.1 125 VQQALDQLRQGLEQQGLALSA 145
                 79***************9984 PP

>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   3.5e-05      0.32     855     907 ..     145     198 ..     123     204 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 3.5e-05
                 HHHHHHHCH.HHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHH CS
    ACR_tran 855 eqeqeasns.llilvalalllvflvLaalyeslsepllilltvPlalvGallal 907
                 ++ +++ ++    ++ l ll  f + a l +  + ++l+l ++Pla+++alla 
  KIR61009.1 145 AARRHSAQRgSFPVFLLVLLGGFRIFAGLSNGRPVAFLVLAVIPLAIASALLAR 198
                 4444444440444666777788889999999999******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2145.22
//
Query:       KIR61010.1  [L=190]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-17   61.5   0.7    1.2e-16   60.2   0.7    1.7  1  TetR_N     Bacterial regulatory proteins, tetR family
    9.4e-05   22.6   9.8    9.4e-05   22.6   9.8    2.2  3  TetR_C_6   BetI-type transcriptional repressor, C-terminal
      0.002   18.4   0.8        0.4   11.0   0.1    2.2  2  TetR_C_25  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.7     2e-20   1.2e-16       1      47 []      16      62 ..      16      62 .. 0.99

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 2e-20
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                Il+aAr++fa++Gy+++tvr++ ++ G+s+ga++++F++K+ L++a+
  KIR61010.1 16 ILAAARACFARHGYEGATVRRLEEATGLSRGAIFHHFRDKDSLFLAV 62
                9********************************************97 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.4      0.38   2.2e+03      39      39 ..      33      33 ..       4      76 .. 0.49
   2 ?    1.1   0.1     0.075   4.5e+02      34      63 ..      63      92 ..      55      98 .. 0.70
   3 !   22.6   9.8   1.6e-08   9.4e-05       8     112 ..      82     189 ..      75     190 .] 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.38
                H CS
    TetR_C_6 39 l 39
                 
  KIR61010.1 33 T 33
                2 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.075
                TT-HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    TetR_C_6 34 ardpelaelqrenyarlrsnlrallaelae 63
                a d++ a +  ++ ++l +  r+lla++++
  KIR61010.1 63 AEDDAAAMVETVARNGLVQVMRDLLARAVS 92
                456666666667777777777777777766 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 1.6e-08
                 HHHCCST..HSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHH.TTSCTTSTHHHHHHHHHHHHHHHHHHHHHTCTTCHHHHHH CS
    TetR_C_6   8 ileallp..ldqerraelavwlafwaeaardpelaelqrenyarlrsnlrallaelae.gglradadaeaaAerlaAlidGLwlraalapeeldaerar 103
                 +++ ll+   ++++  +l   l++  + ++dp++a++ +e  a++ +  r+ la+ +e g lr+d+  +  A+ l    dGL+l++a++ +  d   + 
  KIR61010.1  82 VMRDLLAraVSPDTTGWLGSQLEVSRRLRTDPAFARRWAERSAAIAEATRDRLARQREaGVLREDVPIDVLARFLELAYDGLVLHLAMGRPAGDLGPVL 180
                 55555553345566678888999999***************************************************************9999999999 PP

                 HHHHHHHHH CS
    TetR_C_6 104 alvrrhlda 112
                 +lv++ +++
  KIR61010.1 181 DLVEEAVRR 189
                 999998875 PP

>> TetR_C_25  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.1    0.0016       9.8      30      56 ..      65      91 ..      55     124 .. 0.81
   2 !   11.0   0.1   6.6e-05       0.4      11      79 ..     106     174 ..     102     188 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0016
   TetR_C_25 30 edaeayleegvaaGtirpsrdpkarAr 56
                +da a++e+ +++G+++ +rd  arA 
  KIR61010.1 65 DDAAAMVETVARNGLVQVMRDLLARAV 91
                68999999999*************996 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 6.6e-05
   TetR_C_25  11 vrslqaGgdlakalleh...mvedaeayleegvaaGtirpsrdpkarArylalsslGalllelqlheeedpt 79 
                  r l+++ + a+++ e+   + e +++ l+++ +aG++r+       Ar+l l+  G l+l l++ +   + 
  KIR61010.1 106 SRRLRTDPAFARRWAERsaaIAEATRDRLARQREAGVLREDVPIDVLARFLELAYDG-LVLHLAMGR--PAG 174
                 5778888888888877533256778889***********************987655.777888877..444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1334.77
//
Query:       KIR61011.1  [L=214]
Description: haloacid dehalogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-12   45.7   0.1    6.8e-10   38.9   0.0    2.3  2  Hydrolase_like  HAD-hyrolase-like
    6.3e-12   45.9   0.0      5e-11   43.0   0.0    2.0  1  HAD_2           Haloacid dehalogenase-like hydrolase
    1.6e-08   35.1   0.1    5.6e-08   33.3   0.1    1.8  1  Hydrolase       haloacid dehalogenase-like hydrolase
     0.0027   18.1   0.4     0.0044   17.4   0.4    1.3  1  HAD             haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0073        33      37      59 ..      95     117 ..      93     132 .. 0.79
   2 !   38.9   0.0   1.5e-13   6.8e-10       3      72 ..     139     204 ..     137     207 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0073
                     HHHHCT-EEEEESSSSS-TTTHH CS
  Hydrolase_like  37 gAnnaGwksvLVltGvtrpedle 59 
                      A +aGw  v V  G  r++d++
      KIR61011.1  95 IADDAGWVPVVVSNGSVRQQDAK 117
                     699*************9999865 PP

  == domain 2  score: 38.9 bits;  conditional E-value: 1.5e-13
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEE CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddl 72 
                     +KP+p ++  a++++  + +  +++GD++++Di gA ++G+ sv   +G    +  +   ++pt+ +d l
      KIR61011.1 139 SKPNPRIFALAARRVRMPLRGAWVVGDSPEADIGGAAAVGLPSVWLHRGRVWTDT-R---FAPTFTVDGL 204
                     7************************************************988755.3...6677777765 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.1e-14     5e-11       3     177 ..       6     183 ..       4     184 .. 0.75

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 1.1e-14
       HAD_2   3 FDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee....kieellrkyneekkk...kevkpydgvkelLeeLkea 94 
                  DlD+Tlld+     +  ++ l+  g    +  +++ l+ ++ + l ++  + +   +    +i +l  + +ee+++    + ++ + v  +L    +a
  KIR61011.1   6 LDLDNTLLDRAGSFRAWGERFLDGIGA---PATDIDWLVSIDADGLTDRWDVADAIRDryglLISSL--DLVEELHDgvvVNSRLDPLVACALRIADDA 99 
                 577777777766666666666655544...5556666666666666666666555555555555554..444455553443444445566666666777 PP

       HAD_2  95 gyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsp.tDieaakkagikvia 177
                 g    +v+++s ++++ k++++g+++y    v+se+++ +KP+p++++ a ++  +    +++vGDsp  Di +a ++g+ +++
  KIR61011.1 100 GWVPVVVSNGSVRQQDAKIRRTGLDRYVADWVISEEAGVSKPNPRIFALAARRVRMPLRGAWVVGDSPeADIGGAAAVGLPSVW 183
                 77788**************************************************************************99998 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.1   1.3e-11   5.6e-08     114     210 .]      82     178 ..       1     178 [. 0.86

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.3e-11
                 HHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHH.HHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
   Hydrolase 114 adplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvn.DaaalaaAg 210
                      + p +a a++   +ag+  v++++++ + +++ +++ G d+y++  + s++ +v+kp+p+++  a+r+ + + +   +VGD++  D+ ++aa+g
  KIR61011.1  82 NSR--LDPLVACALRIADDAGWVPVVVSNGSVRQQDAKIRRTGlDRYVADWVISEEAGVSKPNPRIFALAARRVRMPLRGAWVVGDSPEaDIGGAAAVG 178
                 445..77888999999***************************99999999999*********************77777****************987 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.4   9.9e-07    0.0044       2     181 ..       5     167 ..       4     174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 9.9e-07
         HAD   2 lfDfDgTLldg.dslelllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalellaahra 99 
                 l+D+D TLld   s+ ++ +++l       ++ +    +l  ++  + +dr ++a +++  ++ l     + +e++ + v+    ldp +  +l+ + +
  KIR61011.1   5 LLDLDNTLLDRaGSFRAWGERFLDGI----GAPATDIDWLVSIDADGLTDRWDVADAIRDRYGLLI-SSLDLVEELHDGVVVNSRLDPLVACALRIADD 98 
                 79*********777778888555443....566666655555567777779999999999887776.3567777777666666658897777777677* PP

         HAD 100 aGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDsp 181
                 aG+  vvvS+g  +   ++ ++ g d+ +a        +  e   e ++++ + ++ al++    +    +l   +++GDsp
  KIR61011.1  99 AGWVPVVVSNGSVRQQDAKIRRTGLDRYVAD------WVISE---EAGVSKPNPRIFALAA----RRVRMPLRGAWVVGDSP 167
                 ************************6666666......44444...5556666555677777....66666666689999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1403.92
//
Query:       KIR61012.1  [L=313]
Description: RIO-like kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-29  102.5   0.0      3e-29  102.0   0.0    1.2  1  RIO1      RIO1 family
    0.00044   20.3   5.6    0.00061   19.8   3.6    2.0  2  APH       Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.021   14.2   0.0        0.1   12.0   0.0    1.9  2  Kdo       Lipopolysaccharide kinase (Kdo/WaaP) family
      0.049   13.0   0.0      0.066   12.6   0.0    1.1  1  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.0   6.7e-33     3e-29      27     181 ..     131     293 ..     100     299 .. 0.88

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 6.7e-33
                 HHHHCTTTSTTSTCG--GS-HHHHHHHHHHHHHHHHHHHHHTT.....--S--EEEEETTEEEEE--E..ETTEEGGBHHHCG.-HHHHHHHHHHHHHH CS
        RIO1  27 krkkyvsgekrfkdrksktnprklvklwaekEfrnLkrleeag.....vpvPkpielkrhvlvmefig..edgvaapklkdve.eeeeaeelyeevlee 117
                  r+ ++s+e+r ++ ++   ++ ++  wa  Ef++L+rl e+g     + vP p++l    l++ef+g  ++g+aap+l + + e +e+++l e+++++
  KIR61012.1 131 GRRVRRSRENRAMAGRTAFGRQMIAGQWAAAEFAALSRLWEIGaehgrIAVPYPVQLLGTELMLEFVGdpDEGLAAPRLAQCRpEPAELRSLWEQLVDA 229
                 47788999999999999**********************88764444678******************9889***********889************7 PP

                 HHHHHHTSTEEESS-STTSEEEETTEEEE--GTTEEETT.STTHHHHHHHHHHHHHHHHHTTC-- CS
        RIO1 118 mrklykeaglvHaDLSeyNvlvdedkvviIDvsQaveld.hpnalefLerDveniikfFrrkgve 181
                 + +l  +ag+ H+DLS yN+lv+ +++v+ID++Q v++  +p+  efL rDv+ + + F+ +g +
  KIR61012.1 230 LVVLA-RAGYAHGDLSPYNLLVHAGRLVMIDLPQVVDVVaNPQGPEFLARDVRVVGAWFTARGLP 293
                 66666.******************************9755*******************999876 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.18   7.9e+02     151     172 ..      81     125 ..      38     128 .. 0.60
   2 !   19.8   3.6   1.4e-07   0.00061     125     193 ..     200     260 ..     109     281 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.18
                 H..............HHHHHHHH--S.........SS-EEEE-SS CS
         APH 151 q..............vlaalaallpg.........elptvllHgD 172
                                v++a++++ ++         + +++l H+D
  KIR61012.1  81 DlgvlktgkeadvhlVRRAVPDTDRScllavkryrDAQHRLFHRD 125
                 233333333344444667777777777777888888888888988 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 1.4e-07
                 HHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE--- CS
         APH 125 llrqlesatarllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDf 193
                 +++ l++    +la   + + +el++ ++++l + l    +++  HgDl+p Nllv+   gr+  +iD+
  KIR61012.1 200 PDEGLAAP---RLAQCRP-EPAELRS-LWEQLVDALVVLARAGYAHGDLSPYNLLVH--AGRL-VMIDL 260
                 33333333...1121222.2455555.66666666666778****************..6776.69996 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.16   7.2e+02      58      72 ..     159     173 ..     112     188 .. 0.76
   2 ?   12.0   0.0   2.2e-05       0.1     115     166 ..     214     260 ..     204     267 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.16
         Kdo  58 avrEfrllkrLeeag 72 
                 a++Ef++l rL e g
  KIR61012.1 159 AAAEFAALSRLWEIG 173
                 678888888887776 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 2.2e-05
         Kdo 115 laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 ++ +  r l++++  +   l rag  H+dl + n+l++++      +++iDl
  KIR61012.1 214 PEPAELRSLWEQLVDALVVLARAGYAHGDLSPYNLLVHAGR-----LVMIDL 260
                 556667899*****************************996.....999998 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.5e-05     0.066      95     142 ..     214     260 ..     191     290 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.5e-05
                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SG CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDF 142
                  +++e++++++q++ +l  l ++g  H Dl p N+L++  g l ++D+
  KIR61012.1 214 PEPAELRSLWEQLVDALVVLARAGYAHGDLSPYNLLVH-AGRLVMIDL 260
                 567899********************************.888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2065.10
//
Query:       KIR61013.1  [L=81]
Description: hypothetical protein TK50_24815 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-32  112.3   6.2    1.2e-32  112.1   6.2    1.0  1  DUF2630     Protein of unknown function (DUF2630)
  ------ inclusion threshold ------
       0.19   11.5   1.0       0.46   10.2   0.1    2.0  2  PLN_propep  Protealysin propeptide


Domain annotation for each model (and alignments):
>> DUF2630  Protein of unknown function (DUF2630)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   6.2   1.4e-36   1.2e-32       1      80 []       2      81 .]       2      81 .] 0.99

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 1.4e-36
     DUF2630  1 ddkeilarikeLveeEheLrekleagelseeeErarLkeleeeLDqcWDLLrqRrAkreagedpdeaevrpaseVegYrq 80
                ddk+il+ri+eLv+eEh+Lr++++++e  +++E++rL+elee+LDqcWDLLr+RrA+r+a+ dp+++ vrp+ eVe+Y+q
  KIR61013.1  2 DDKTILNRISELVDEEHRLRAAAQTKESGTADEQDRLRELEESLDQCWDLLRRRRAARQAHGDPEAQGVRPVPEVERYLQ 81
                69****************************************************************************98 PP

>> PLN_propep  Protealysin propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   5.2e-05      0.46       8      24 ..       6      22 ..       5      25 .. 0.92
   2 ?   -1.5   0.1      0.24   2.1e+03      15      21 ..      31      37 ..      28      40 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 5.2e-05
  PLN_propep  8 iLrrIidngdeeqRacA 24
                iL+rI++ +dee R +A
  KIR61013.1  6 ILNRISELVDEEHRLRA 22
                9*************998 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.24
  PLN_propep 15 ngdeeqR 21
                ++de++R
  KIR61013.1 31 TADEQDR 37
                5899998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1184  (0.0660383); expected 358.6 (0.02)
Passed bias filter:                      717  (0.0399911); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 606.45
//
Query:       KIR61014.1  [L=304]
Description: hypothetical protein TK50_24820 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-15   54.8   0.1    1.1e-09   38.5   0.0    2.2  2  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.2e-08   33.5   0.0    0.00012   22.0   0.0    2.1  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
    8.3e-07   28.9   0.5      0.026   14.5   0.1    2.3  2  FR47             FR47-like protein
    1.2e-06   28.9   0.1    7.9e-05   23.0   0.0    2.2  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0016   18.5   0.2      0.025   14.7   0.0    2.3  2  Acetyltransf_9   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.055   13.6   0.6        7.8    6.7   0.0    2.4  2  Acetyltransf_CG  GCN5-related N-acetyl-transferase
       0.21   11.1   0.0       0.31   10.6   0.0    1.2  1  GNAT_acetyltran  GNAT acetyltransferase
       0.41   10.8  13.3       0.05   13.8   5.4    2.4  2  Acetyltransf_6   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0     5e-13   1.1e-09      29     117 .]      41     130 ..      13     130 .. 0.76
   2 !   14.7   0.0   1.3e-05     0.028      29     111 ..     201     283 ..     170     289 .. 0.71

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 5e-13
                     HSTTC..EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  29 sleae..gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                      l +e  g lvae dg ++G ++     + +++      l V+pe+rg+G+G aLl a+e+r+   g++  ++ v +d  a  ++ e++G+
      KIR61014.1  41 ALGPErfGALVAEVDGVPAGVARTGLLHESAEPGLGFVNLTVRPERRGRGAGAALLAAAEQRLAGLGATTAYAMV-DDTPADLAFAERHGY 130
                     33334468888************9999995556666669*****************************6656644.556777999999998 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.3e-05
                     HSTTC...EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETT.EHHHHHH CS
  Acetyltransf_1  29 sleae...gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveed.ndaairl 111
                     ++++     + va  dge+++f  +l +  +            ++ +r++Gl+++  +a++ ra   g++   ++v +  n a+ +l
      KIR61014.1 201 HRPDLdreLTTVAMVDGEVAAFTVGLTDSRH---DHRCGMTGTRRPHRRRGLARLVKQAALGRAAAAGFRH-SVTVNDAgNAAMLGL 283
                     3333333144459999999999999999994...444444589**************************77.555656647666665 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   5.5e-08   0.00012      34     108 ..      50     132 ..      37     136 .. 0.86
   2 !    9.5   0.0   0.00041      0.92      34      97 ..     211     278 ..     197     297 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 5.5e-08
  Acetyltransf_10  34 lvaeeggkivGvi..el.rdgs......hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYeklGFka 108
                      lvae++g ++Gv+  +l    +          l V+pe rg+G g+aLl a+e+++   g  +    v+ +p+  +f e++G+++
       KIR61014.1  50 LVAEVDGVPAGVArtGLlH--EsaepglGFVNLTVRPERRGRGAGAALLAAAEQRLAGLGATTaYAMVDDTPADLAFAERHGYRR 132
                      7899999999999443322..235787788899**********************999999999*******************86 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00041
  Acetyltransf_10  34 lvaeeggkivGvi.elrdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspya 97 
                       va ++g+++ +  +l+d++   + ++   ++ +r++G+++   +a++ +a  +g ++++tvn + +a
       KIR61014.1 211 TVAMVDGEVAAFTvGLTDSRhdhRCGMTGTRRPHRRRGLARLVKQAALGRAAAAGFRHSVTVNDAGNA 278
                      455566666644434444443437777799********************99999998*****88755 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     5e-05      0.11      25      78 ..      78     131 ..      63     137 .. 0.81
   2 !   14.5   0.1   1.2e-05     0.026      26      83 ..     237     295 ..     218     299 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5e-05
                 EEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHH.HHHT-E CS
        FR47  25 galqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirly.eklGfe 78 
                   l v+pe r+rG g  l +a  +++a  g t ++++  ++tp+   + e+ G++
  KIR61014.1  78 VNLTVRPERRGRGAGAALLAAAEQRLAGLGAT-TAYAMVDDTPADLAFaERHGYR 131
                 4689**************************87.6788888888864432566665 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.2e-05
                 EEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEE.TT-HHHHHHHHHHT-EEEEEE CS
        FR47  26 alqvlpehrrrGlgsrlvkalakeiaergktvllvvv.asNtpsirlyeklGfekieet 83 
                 +  ++  hrrrGl++++ +a   + a++g   ++ v+ a+N +   l   lG++ i ++
  KIR61014.1 237 MTGTRRPHRRRGLARLVKQAALGRAAAAGFRHSVTVNdAGNAAMLGLNATLGYRTIAAQ 295
                 5668999**********9998888888888777777626677778999******99544 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.5e-08   7.9e-05       6      75 ..      50     131 ..      45     132 .. 0.67
   2 ?    3.7   0.0     0.037        83       7      48 ..     212     256 ..     198     290 .. 0.65

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 3.5e-08
                     EEEEETTEEEEEEEEEEES......TCTEEEEE-GGGTTSSHHHHHHHHTT.....SEEEEE.EEEE..THH.HHHHHHHHTTEE CS
  Acetyltransf_7   6 fVaeddgkivGfialslld......aeitrlaVdpeyrgkGiGraLleaae.....kgiile.qlel..nae.kaikfYeklGFe 75 
                     +Vae dg + G ++  ll           +l V+pe rg+G G aLl+aae      g  ++ +     +++ + ++f e++G++
      KIR61014.1  50 LVAEVDGVPAGVARTGLLHesaepgLGFVNLTVRPERRGRGAGAALLAAAEqrlagLGA-TTaY--AmvDDTpADLAFAERHGYR 131
                     69999999999877666667766444444499***************973335533332.1222..2333323667799999998 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.037
                     EEEETTEEEEEEEEEEES..TCTEE...EEE-GGGTTSSHHHHHHHH CS
  Acetyltransf_7   7 VaeddgkivGfialslld..aeitr...laVdpeyrgkGiGraLlea 48 
                     Va  dg++  f +   ++  ++  r     ++  +r++G++r   +a
      KIR61014.1 212 VAMVDGEVAAFTVGLTDSrhDH--RcgmTGTRRPHRRRGLARLVKQA 256
                     5555555555544444444322..2343569999******9976554 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.1e-05     0.025      43     126 ..      40     131 ..       4     133 .. 0.75
   2 ?    1.8   0.2      0.11   2.4e+02      77     106 ..     236     265 ..     196     273 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-05
                     EEEEEEETTEEEEEEEEEEEEEE....ETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--....SSHHHHHTTT-E CS
  Acetyltransf_9  43 rvlgaedngelvgqlallpleln....vpGktlkaagvtgVavapehrgrgvlskLlaraleemreegqplsllfP....ssipiYrrfGye 126
                     r+lg e+ g lv+ +  +p  ++    ++++  +  g +  +v pe rgrg   +Lla+a ++++  g++ ++ +     +  ++ +r Gy+
      KIR61014.1  40 RALGPERFGALVAEVDGVPAGVArtglLHESAEPGLGFVNLTVRPERRGRGAGAALLAAAEQRLAGLGATTAYAMVddtpADLAFAERHGYR 131
                     5555555555555555544433311116777778889999*******************************999855544999999**9997 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.11
                     EEEEE-CCGTTS-HHHHHHHHHHHHHHHTT CS
  Acetyltransf_9  77 tgVavapehrgrgvlskLlaraleemreeg 106
                     +++++   hr+rg+++   ++al+++++ g
      KIR61014.1 236 GMTGTRRPHRRRGLARLVKQAALGRAAAAG 265
                     67899999*****99888788887777665 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0035       7.8      27      49 ..      77      99 ..      63     107 .. 0.87
   2 ?    4.9   0.1     0.012        28      30      59 ..     238     267 ..     213     271 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0035
  Acetyltransf_CG 27 fthTeVpeelrGkGiAkkLvkaa 49
                     f    V +e rG+G +++L  aa
       KIR61014.1 77 FVNLTVRPERRGRGAGAALLAAA 99
                     566789*************9998 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.012
  Acetyltransf_CG  30 TeVpeelrGkGiAkkLvkaalddareeglk 59 
                      T +   +r++G+A+   +aal  a ++g++
       KIR61014.1 238 TGTRRPHRRRGLARLVKQAALGRAAAAGFR 267
                      7778899****************9999986 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00014      0.31     161     236 ..     212     291 ..     197     295 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00014
  GNAT_acetyltran 161 vilkngeivsgasSysvyekgieiei.dTkedyrrkgLAtivaaalileclkrgl...yPsWDaaneaSvaLaekLGYef 236
                      v++ +ge+ +  +  + +++ + +    T+  +rr+gLA++v +a + ++   g    +   Da n a + L   LGY+ 
       KIR61014.1 212 VAMVDGEVAAFTVGLTDSRHDHRCGMtGTRRPHRRRGLARLVKQAALGRAAAAGFrhsVTVNDAGNAAMLGLNATLGYRT 291
                      56677888888888888888777776259****************99998886541116677999999999999999986 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   1.5      0.17   3.7e+02      59     130 ..      35     110 ..       9     132 .. 0.76
   2 ?   13.8   5.4   2.2e-05      0.05      53     130 ..     191     268 ..     125     270 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.17
  Acetyltransf_6  59 rdllaalaargalrlyvlrldgrpvAva.lglrsgd...rlyywlggydpelaklspgllllweliedaaeeGlrr 130
                     r  +a+   +++   +v+++dg p++va  gl ++     l +   +++pe ++ ++g  ll+ + +++a  G ++
      KIR61014.1  35 RWQAARALGPERFGALVAEVDGVPAGVArTGLLHESaepGLGFVNLTVRPERRGRGAGAALLAAAEQRLAGLGATT 110
                     4445555567777788888899999888744444443456778888889999999999999999999988888765 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.2e-05
  Acetyltransf_6  53 ltraflrdllaalaargalrlyvlrl.dgrpvAvalglrsgdrly.ywlggydpelaklspgllllweliedaaeeGlrr 130
                      + ++l+++++++  + + +l+++ + dg+++A+ +gl + ++ + + ++g ++ +++ ++ +l+ + ++ +aa+ G+r+
      KIR61014.1 191 GYADWLAAYWHRP--DLDRELTTVAMvDGEVAAFTVGLTDSRHDHrCGMTGTRRPHRRRGLARLVKQAALGRAAAAGFRH 268
                     6789999999*99..677778777766************9998886899999999**********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2229.29
//
Query:       KIR61015.1  [L=864]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-36  125.9  19.7    3.4e-36  125.9  19.7    2.4  2  NIT          Nitrate and nitrite sensing
    7.2e-10   39.4   0.0    1.4e-09   38.4   0.0    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    1.4e-05   25.4   0.7    5.7e-05   23.4   0.7    2.2  1  HAMP         HAMP domain
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.026   14.3   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> NIT  Nitrate and nitrite sensing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9  19.7   7.5e-40   3.4e-36       2     222 ..      54     286 ..      53     294 .. 0.89
   2 ?    3.3   1.7     0.021        94      93     190 ..     366     458 ..     311     516 .. 0.71

  Alignments for each domain:
  == domain 1  score: 125.9 bits;  conditional E-value: 7.5e-40
         NIT   2 LvhaLQkERglsagylasgggerkaaelaaqraatDaalaalr..........al.aglarrldallraldqLpalRrqvdtrkldakeavaaYtdvia 89 
                 Lv +LQ+ER ls +yl+ +  e+++++l a r++tD+ ++++r          a+ ++l++rlda+  +l++L++ R+ vd+r++d++ ++aaY +v++
  KIR61015.1  54 LVLQLQRERKLSLAYLGRPD-ETRREALGAERRRTDELASTFResstswratvAAsDTLKQRLDAVYGQLSRLGETRSGVDARSVDRSSTLAAYGQVVR 151
                 7889*************774.244555*************************6488999**************************************** PP

         NIT  90 aLldladelaqgspdrelarqlralaalsrakEalsqerallaaalaagrfsaalyaaflslvarqqaalaefraaatpaqralydetvtgpavkaaet 188
                 +++d+ ++l+  ++d+++  +++al +l ra+E lsqe+a+l++al+agr++aa+++++++l+++q+ a + +++ +++a+r++yd+ v+g+a +++++
  KIR61015.1 152 SIFDVYSALGL-LDDQQVGEDTTALIELNRARELLSQEDAMLTGALSAGRMTAAERSQLAQLIGAQRFAADLAVSRLPAADRERYDAMVGGEAFENLRD 249
                 ********999.58*****************************************************7779999***************999******* PP

         NIT 189 lrdr.l..astg..gv...daedeeeWfaastaridqlrave 222
                 l+d+ l  +  g  ++   +a+d   W+aa +  + q  +v 
  KIR61015.1 250 LEDGiLegR--GadPRlgfEATD---WDAAVAPALAQWSQVV 286
                 ****76432..222223446666...****999888888775 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.021
         NIT  93 dladelaq.gspdrelarqlralaalsrakEalsqerallaaalaagrfsaalyaaflslvarqqaalaefraaatpaqralydetvt.gpavkaaetl 189
                 d+a+e+     +d e+ + + a++a+ +   +++ e+a l+  +    +  +l+++ ++lv rq ++l+++++   +++++ ++++++ +     a+++
  KIR61015.1 366 DVAREAPPlEFGDDEVGQVGKAFNAVQETALRTAVEQAELRRNVRE--VFLSLARRTQALVHRQLTLLDAMERR--EQDAEELEDLFRvDHL---ATRM 457
                 6666655556778899999999999999999999999999766663..47889999999999988999999555..5577788888863333...3333 PP

         NIT 190 r 190
                 r
  KIR61015.1 458 R 458
                 3 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   3.2e-13   1.4e-09       6     110 ..     517     620 ..     513     622 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 3.2e-13
                 HHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEE CS
   HATPase_c   6 LrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttf 104
                 + +++ +l++N + f+++ +++ev+ +a  + +vi++eD G G+++edl     + ++ +s+ +      lGl++v +l++++g +++++++  +Gtt 
  KIR61015.1 517 IIHLLAELIENGLSFSPPHTTVEVRGQAVANGFVIEIEDRGLGMSEEDLAAANHRIVD-RSELNLANAARLGLYVVSRLTDRHGVRVQLKESAYGGTTA 614
                 789************7777777777665459*******************55556666.77777889999*******************999999***9 PP

                 EEEEES CS
   HATPase_c 105 tftlpl 110
                 ++ +p 
  KIR61015.1 615 VVLIPA 620
                 888776 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.7   1.3e-08   5.7e-05       3      50 ..     330     394 ..     328     397 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.3e-08
                 HHTTHHHHHHHHHHHHHHTTT.............BTSST...CCT.TSSSHHHHHHHHHHHHHHH CS
        HAMP   3 arrilrPLrrLaraarriaaG.............dldtr...lpv.sgrDEiGeLarafNaMldr 50 
                 ar +lr L+rL++aa  +a+              d+d+    +p   g+DE+G++++afNa ++ 
  KIR61015.1 330 ARVLLRQLERLRDAAFTLANDrlpsvverlghgeDVDVAreaPPLeFGDDEVGQVGKAFNAVQET 394
                 8999***************9666777777778895555577755558**************9986 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.8e-06     0.026       7      53 ..     521     568 ..     519     590 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.8e-06
  HATPase_c_3   7 laelvdNsldAdaenvkievnknr.gktgeivieDdGkGmseeelkna 53 
                  lael++N+l+ +  + ++ev  +   +   i ieD G Gmsee+l  a
   KIR61015.1 521 LAELIENGLSFSPPHTTVEVRGQAvANGFVIEIEDRGLGMSEEDLAAA 568
                  89*****9998888888888877756789***************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.22s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 6707.40
//
Query:       KIR61016.1  [L=140]
Description: dynein regulation protein LC7 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-26   92.0   0.5    2.2e-26   91.4   0.5    1.2  1  Robl_LC7  Roadblock/LC7 domain


Domain annotation for each model (and alignments):
>> Robl_LC7  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.5   1.2e-30   2.2e-26       2      91 .]      12     102 ..      11     102 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 1.2e-30
                 HHHHHHHCCHHCTECEEEEEETTS-EEEE.CCSSSS-HHHHHHHHHHHHHHHHHHHHHCTSSSECEEEEEETTEEEEEEECTTTEEEEEEE CS
    Robl_LC7   2 veelleelqsvpgvrgalvvskdGlviat.stldnddadqlAalasgllsaakaaarelgegelkelliegkkgelyltpagegalLvvla 91 
                  ++l++++ +v+++++a+ +s dGl++a+ ++l++dd ++lAa+a+g++s+a++a++++g+g++++++ie+++  l++t+ag++a+L+vla
  KIR61016.1  12 TWLLDDLVGRVKQAEHAVALSTDGLLMASsQGLSRDDGEHLAAMAAGIQSLARGAGKRFGGGQVQQTIIEMQSSFLFVTAAGRNACLAVLA 102
                 7****************************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1028.89
//
Query:       KIR61017.1  [L=128]
Description: hypothetical protein TK50_24850 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-36  125.2   0.5    1.2e-36  125.0   0.5    1.0  1  DUF742        Protein of unknown function (DUF742)
     0.0046   16.7   0.1     0.0064   16.3   0.1    1.4  1  HTH_IclR      IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.044   13.7   0.0       0.11   12.4   0.0    1.6  2  TrmB          Sugar-specific transcriptional regulator TrmB
      0.066   13.1   0.1        0.1   12.5   0.1    1.3  1  HTH_5         Bacterial regulatory protein, arsR family
      0.074   12.6   0.0       0.12   12.0   0.0    1.4  1  Sigma70_r4    Sigma-70, region 4
      0.085   12.8   0.2       0.14   12.1   0.2    1.3  1  MarR_2        MarR family
      0.087   12.6   0.0       0.17   11.7   0.0    1.4  1  HTH_23        Homeodomain-like domain
      0.099   12.8   0.0       0.19   11.9   0.0    1.6  1  HTH_28        Helix-turn-helix domain
       0.16   11.4   0.7       0.38   10.2   0.1    1.9  2  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I


Domain annotation for each model (and alignments):
>> DUF742  Protein of unknown function (DUF742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   0.5     6e-40   1.2e-36       2     114 .]      16     128 .]      15     128 .] 0.96

  Alignments for each domain:
  == domain 1  score: 125.0 bits;  conditional E-value: 6e-40
      DUF742   2 ekgalvRpyaltgGrtrpee.dldletlvvaeagape.aarlqpehrailrLcreplsVaelaAelklPvgvvrvLlsdLldaglltvrapvtdraaeq 98 
                 ++g++vRpya+tgGr rp + ++dl++lv+a++ + + +  l+peh ai++Lc++ +sVae+aA+l+lPvg++rvLl+dL++ +l++vr+p t+  a+ 
  KIR61017.1  16 HAGPVVRPYAVTGGRARPVTgTFDLISLVTATRSEVSpEVGLGPEHLAIVALCQRIQSVAEVAAHLDLPVGTIRVLLGDLMARDLVQVREPRTT--AGL 112
                 57899**************99************9887789*****************************************************9..99* PP

      DUF742  99 pdrelLeevlsGLrrl 114
                 pd ++ e+v++GLr+l
  KIR61017.1 113 PDDSIFEAVINGLRAL 128
                 **************86 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   3.2e-06    0.0064      17      49 ..      70     102 ..      37     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.2e-06
                 SS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  17 qeltlselArrtglpkStvhRlLqtLvelGyve 49 
                 +  +++e+A++++lp  t + lL  L+ + +v+
  KIR61017.1  70 RIQSVAEVAAHLDLPVGTIRVLLGDLMARDLVQ 102
                 44589*************************997 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.5     3e+03      17      33 ..      40      56 ..      38      58 .. 0.76
   2 ?   12.4   0.0   5.5e-05      0.11      19      58 ..      68     107 ..      62     121 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.5
                HHHHCCCHHCHHCCCTT CS
        TrmB 17 Llklgpatadeiaeelg 33
                L++l  at +e++ e+g
  KIR61017.1 40 LISLVTATRSEVSPEVG 56
                67777889999998887 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.5e-05
                 HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB  19 klgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58 
                 ++   ++ e+a +l++p  ++   L  L+ ++lV++++ r
  KIR61017.1  68 CQRIQSVAEVAAHLDLPVGTIRVLLGDLMARDLVQVREPR 107
                 55567899***************************99865 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   5.1e-05       0.1       9      46 ..      65     102 ..      62     103 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.1e-05
                 HHHTTSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5   9 klLaegelcvcelaeelglsqstvShHLkkLreaGLVe 46 
                  +L+++ ++v e a++l+l+ +t++  L  L+  +LV+
  KIR61017.1  65 VALCQRIQSVAEVAAHLDLPVGTIRVLLGDLMARDLVQ 102
                 68999********************9999999999886 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.8e-05      0.12      21      41 ..      72      92 ..      55      98 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.8e-05
                --HHHHHHHHTS-HHHHHHHH CS
  Sigma70_r4 21 lTleEIgerlgiSrerVrqie 41
                ++ +E++++l+++ +++r ++
  KIR61017.1 72 QSVAEVAAHLDLPVGTIRVLL 92
                379***************886 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   6.9e-05      0.14       9      55 ..      62     105 ..      55     113 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.9e-05
                 HHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2   9 rvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrp 55 
                  ++ aL  r     +v+e+a++l+l+ +++  +l +L a+ Lv+ r+
  KIR61017.1  62 LAIVALCQRI---QSVAEVAAHLDLPVGTIRVLLGDLMARDLVQVRE 105
                 4555555555...49****************************8874 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.5e-05      0.17       6      35 ..      60      89 ..      59      93 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.5e-05
      HTH_23  6 eRlrillllaeGlsvreIAreLgvsrrTvy 35
                e+l i+ l+++ +sv+e+A++L+ +  T++
  KIR61017.1 60 EHLAIVALCQRIQSVAEVAAHLDLPVGTIR 89
                67899999999*****************97 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.6e-05      0.19       3      33 ..      62      92 ..      47      95 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.6e-05
      HTH_28  3 leiikllaaGhsvreaArelgisrrtvyrWi 33
                l i+ l ++  sv+e+A++l +   t+++++
  KIR61017.1 62 LAIVALCQRIQSVAEVAAHLDLPVGTIRVLL 92
                57999999999*****************986 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.2   6.4e+03      46      51 ..      11      16 ..      10      17 .. 0.67
   2 ?   10.2   0.1   0.00019      0.38      19      45 ..      63      89 ..      61      89 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.2
  HTH_Tnp_ISL3 46 rildry 51
                  r++d++
    KIR61017.1 11 RWVDDH 16
                  778777 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00019
  HTH_Tnp_ISL3 19 yilelllesrsvkavArqlgvSwtTVw 45
                  +i++l+++ +sv++vA++l++   T++
    KIR61017.1 63 AIVALCQRIQSVAEVAAHLDLPVGTIR 89
                  577888888************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 938.14
//
Query:       KIR61018.1  [L=202]
Description: ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-29  102.1   0.3    1.8e-27   96.7   0.3    2.5  1  ATP_bind_1   Conserved hypothetical ATP binding protein
  ------ inclusion threshold ------
      0.047   13.6   0.0       0.14   12.1   0.1    1.7  2  RsgA_GTPase  RsgA GTPase
        0.1   12.1   0.0        3.7    7.1   0.0    2.1  2  FeoB_N       Ferrous iron transport protein B
       0.14   11.8   0.3        0.2   11.3   0.3    1.3  1  AAA_24       AAA domain
       0.17   10.9   0.5       0.27   10.3   0.5    1.3  1  T2SSE        Type II/IV secretion system protein
        0.3   11.6   1.2       0.51   10.9   0.4    1.9  2  AAA_18       AAA domain


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.3   5.9e-31   1.8e-27       1     240 [.      23     191 ..      23     192 .. 0.97

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 5.9e-31
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDPAaeelpYeaavdirelitledvmed..lglgpngalvvaleflresldwldeelekeeddyllfD 97 
                 v+G++G+GKtt+vga+se+++lr                       ++e++t+  v  d   g++ +++++va++f+r+++   +++l      ++lf+
  KIR61018.1  23 VAGGFGVGKTTMVGAVSETRPLR-----------------------TEEVLTETGVGIDdlSGVEGKTTTTVAMDFGRITI---SDDL-----VLYLFG 90 
                 89*********************.......................***********9999*******************9...9999.....9***** PP

  ATP_bind_1  98 tPGQielfthseslakiveeLesefalvvvyLvDsqrltd...ptkfisgllsalsamlrlelPhvvvlnkfDllkeklekeleffedvealsllleke 193
                 tPGQ+++++++++la         +al++v+L+D++rl+d   ++++++g           ++P+vv++n+f++++                       
  KIR61018.1  91 TPGQDRFWFVWDELA--------LGALGAVVLADTRRLADcfpSIDYFEG----------RGTPFVVAVNCFEGAR----------------------- 148
                 ***************........89*****************99******..........**************55....................... PP

  ATP_bind_1 194 eekykklaeaiaelleefalvlrflplssekeesiedllslidealq 240
                     ++   ++ ++l++   v+++l++++++e+s e+l++l+++al+
  KIR61018.1 149 ----RYRLDEVQAALNLDPGVPVLLCDARQRESSKEVLITLMEHALK 191
                 ....788899*********************************9975 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   4.6e-05      0.14     103     137 ..      22      56 ..      15      94 .. 0.87
   2 ?   -1.7   0.0      0.79   2.3e+03      74      97 ..     162     185 ..     130     191 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.6e-05
                  EEECSTTSSHHHHHHHHCTT-----S--------- CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpelelktgevseklgrG 137
                  +++G  GvGK+t++ a+ ++  l+t+ev +++g G
   KIR61018.1  22 LVAGGFGVGKTTMVGAVSETRPLRTEEVLTETGVG 56 
                  578999**********************9998876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.79
                  HTTSEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  74 algyevllvsaktkegleelkell 97 
                  + g++vll++a+++e+ +e+   l
   KIR61018.1 162 DPGVPVLLCDARQRESSKEVLITL 185
                  568889999998888877766555 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.019        55       2      24 ..      20      42 ..      19      74 .. 0.83
   2 ?    7.1   0.0    0.0012       3.7     105     153 ..     134     182 ..     111     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.019
                EEEEEESTTSSHHHHHHHHHTTS CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgak 24
                ++ ++G   vGktt++ a+++++
  KIR61018.1 20 KILVAGGFGVGKTTMVGAVSETR 42
                78999***********9998765 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0012
                 TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH CS
      FeoB_N 105 gvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieell 153
                 g+p+v+a+n ++ a++ +++  +++L+   gvpv+ + a+++e  +e+l
  KIR61018.1 134 GTPFVVAVNCFEGARRYRLDEVQAALNLDPGVPVLLCDARQRESSKEVL 182
                 6899***********999999999999999***********99998875 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   6.8e-05       0.2       2      30 ..      18      45 ..      17      80 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.8e-05
      AAA_24  2 klkiliyGpsgiGKTtlakelgpkplfid 30
                ++kil+ G  g+GKTt++     ++  + 
  KIR61018.1 18 AIKILVAGGFGVGKTTMVGAV-SETRPLR 45
                78***************9888.4433333 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.5     9e-05      0.27     129     161 ..      18      50 ..      10      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9e-05
       T2SSE 129 rglilvsGgTgsGKttllyallkeinksderiv 161
                    ilv+Gg g GKtt++ a+ ++ + ++e+++
  KIR61018.1  18 AIKILVAGGFGVGKTTMVGAVSETRPLRTEEVL 50 
                 568***************999888777766665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   0.00017      0.51       1      22 [.      21      42 ..      21      75 .. 0.82
   2 ?   -1.4   0.0       1.1   3.1e+03      82     112 ..     165     196 ..     127     199 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
      AAA_18  1 IlltGtpGvGKttlakeLskrl 22
                Il++G  GvGKtt+  ++s+  
  KIR61018.1 21 ILVAGGFGVGKTTMVGAVSETR 42
                99*************9999874 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      AAA_18  82 hlaeleseaakdikk.vvLtaspeelleRlek 112
                 +++ l+++++++  k v +t+ ++ l+ R ++
  KIR61018.1 165 VPVLLCDARQRESSKeVLITLMEHALKIRESR 196
                 44445555555555556666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1502.74
//
Query:       KIR61019.1  [L=951]
Description: aconitate hydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.3e-179  596.0   0.0   9.7e-179  595.2   0.0    1.4  1  Aconitase    Aconitase family (aconitate hydratase)
    1.4e-43  148.3   0.0    2.2e-43  147.7   0.0    1.3  1  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  595.2   0.0  1.1e-182  9.7e-179       4     461 .]      70     621 ..      59     621 .. 0.95

  Alignments for each domain:
  == domain 1  score: 595.2 bits;  conditional E-value: 1.1e-182
   Aconitase   4 wdahlveeegiayvpdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsv.....gaeealeknledefernkeryefLksaakaf 97 
                 wda++  + +i+++p+rvl+qd+tgv+++vdla++reavr+lgg+++++++l+p++lvidhsv     g+e+a+e+n+e e+ernkery+fL+++++af
  KIR61019.1  70 WDATADPSVEIQFTPARVLMQDFTGVPCVVDLATMREAVRDLGGDATKVNPLAPAELVIDHSViadlfGREDAFERNVELEYERNKERYQFLRWGQTAF 168
                 666655443499*************************************************************************************** PP

   Aconitase  98 .girvvppgqGIvHqvnlEy.........glalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvl 186
                  +++vvppg+GIvHqvn+Ey         g a+p+ tvvgtDSHTtm++glGvl++GvGgieaea++lgqp+++ ip+vvg+kl+G++++g+ta+Dlvl
  KIR61019.1 169 nEFKVVPPGTGIVHQVNIEYlartimergGQAYPD-TVVGTDSHTTMVNGLGVLGWGVGGIEAEAAMLGQPVSMLIPRVVGFKLHGEMPAGTTATDLVL 266
                 99**************************99*****.*************************************************************** PP

   Aconitase 187 avigklrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaav.lveaydkaqalfelaadedaeydkvleldl 284
                 +++++lrk+gvvgk+vEf+G+gv++ +l++raTi NM++E+G+t+++fp+d +t++YL++tgr++++v lveay+k+q+l++   +++++y++ leldl
  KIR61019.1 267 TITEMLRKHGVVGKFVEFYGPGVSAVPLANRATIGNMSPEYGSTVAIFPIDAETVRYLELTGRDPQQVaLVEAYAKEQGLWHDP-AAEPDYSERLELDL 364
                 ********************************************************************9************655.55789********* PP

   Aconitase 285 stlepsvagpkrPqdavplselvkkefkeele................................................................... 316
                  t+eps+agpkrPqd+vpl + +   f+++l+                                                                   
  KIR61019.1 365 GTIEPSLAGPKRPQDRVPLGSAKT-LFRSALTdyvaadatggdagrkpgvpqqekpfgtdgpadeasaesfpasdspangvndpadaprdlvtaavgag 462
                 *******************66554.67777778888*************************************************************97 PP

   Aconitase 317 .keaaekaleyklkegtklkdgkvdiaaigSCTNssnedvraaaglla.kavekglkvkpgvktsvaPGSevvkayleaeGlleiLekaGfevvgagCs 413
                  ++++  +++ +++ +++l++g+v+iaai+SCTN+sn++v++ a+lla +av+kgl  kp+vkt++aPGS+vv +y++++Gl+++L+k+Gf++vg+gC+
  KIR61019.1 463 gRASNPVQVTGTDGVEYELDHGAVVIAAITSCTNTSNPQVMIGAALLArNAVDKGLARKPWVKTTLAPGSKVVMDYYDRAGLTPYLDKLGFNLVGYGCT 561
                 766666666668899************************************************************************************ PP

   Aconitase 414 tCignsdrle........ege...aivsssNRNFegRqgpntra.yLaSPelvvaaAlaG 461
                 tCigns++l+        eg+   ++v+s+NRNFegR++p++++ yLaSP+lvva+AlaG
  KIR61019.1 562 TCIGNSGPLPeevsaavnEGDlavVSVLSGNRNFEGRINPDVKMnYLASPPLVVAYALAG 621
                 *********977777665455999***********************************9 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.7   0.0   2.5e-47   2.2e-43       3     129 ..     751     877 ..     749     879 .. 0.98

  Alignments for each domain:
  == domain 1  score: 147.7 bits;  conditional E-value: 2.5e-47
                  CCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEEEHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHHHT CS
  Aconitase_C   3 kllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgekedvvdaaerykkegaklvviagknfGeGSSRehAAkalrll 100
                  k+l ++G+ +++++s+++++++++++++gt+ani+l+n+lv++++ + t +  +ge++ ++da   y+++g +lv++agk++G+GSSR++AAk++ ll
   KIR61019.1 751 KYLAEHGVPRHEFNSYGSRRGNHEVMIRGTFANIRLRNQLVPGVEGGFTVNHLTGEQTTIYDASTAYQEAGVPLVILAGKEYGSGSSRDWAAKGTMLL 848
                  7999***********************************************9********************************************** PP

                  TEEEEEES-B-HHHHHHHHHTT-EEEEES CS
  Aconitase_C 101 GikaviaeSFerIfennliknglLplefk 129
                  G+kaviaeS+erI+++nli++g+Lpl+f+
   KIR61019.1 849 GVKAVIAESYERIHRSNLIGMGVLPLQFP 877
                  ***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (951 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 6763.36
//
Query:       KIR61020.1  [L=219]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-19   71.0   6.6    1.2e-19   71.0   6.6    1.9  3  SNARE_assoc  SNARE associated Golgi protein
  ------ inclusion threshold ------
      0.059   13.0   0.2      0.059   13.0   0.2    2.2  2  DUF3096      Protein of unknown function (DUF3096)


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       1.5   1.4e+04       3      13 ..      14      24 ..       8      29 .. 0.50
   2 !   71.0   6.6   1.3e-23   1.2e-19       2     119 ..      34     161 ..      33     162 .. 0.81
   3 ?   -1.8   0.0      0.48   4.3e+03      21      31 ..     179     189 ..     167     206 .. 0.60

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.5
  SNARE_assoc  3 sevllvaaGvl 13
                   v+l++ Gv+
   KIR61020.1 14 VAVYLIVSGVI 24
                 33333444433 PP

  == domain 2  score: 71.0 bits;  conditional E-value: 1.3e-23
  SNARE_assoc   2 PsevllvaaGvlf.....glllgtlvtslgallGaslayllgrylgr.......kalrrkllsekrvkalerlverygflallllrllpivPrdlvny 87 
                  P+e++lv  ++l+      + ++ ++++ ga++G+s++y++gr+ gr       +++++  l +  + ++e+++ r+g++a++++r+++ + r l++ 
   KIR61020.1  34 PGEIVLVSSALLAatgvvQPEWVAVAAAFGAIVGDSIGYAVGRRGGRpllarlgRRFPK-HLGPAQLARAEQSFARHGVWAVFFGRFVALL-RILAGP 129
                  6555555444444332225777************************9999655443433.345555555********************99.****** PP

  SNARE_assoc  88 vaGltrvsfkrFflatfiGsipwalvyaylGs 119
                  +aG+++v+++rF+la+++G ++wa+ ++yl +
   KIR61020.1 130 LAGALHVPYRRFLLANAAGGLVWAFGTTYLLY 161
                  *****************************987 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.48
  SNARE_assoc  21 lvtslgallGa 31 
                  lv+++ a lG+
   KIR61020.1 179 LVLAVLAGLGS 189
                  33333333333 PP

>> DUF3096  Protein of unknown function (DUF3096)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   6.6e-06     0.059      22      34 ..      14      26 ..      13      29 .. 0.92
   2 ?   -2.5   0.5      0.45   4.1e+03       2       8 ..     180     186 ..     180     187 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.6e-06
     DUF3096 22 VAiYLIviGllGL 34
                VA+YLIv G++G 
  KIR61020.1 14 VAVYLIVSGVIGV 26
                9**********96 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.45
     DUF3096   2 lvALiaG 8  
                 ++A++aG
  KIR61020.1 180 VLAVLAG 186
                 689***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1444.36
//
Query:       KIR61021.1  [L=131]
Description: hypothetical protein TK50_24875 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-12   47.6   3.5    1.5e-12   47.6   3.5    2.9  3  HTH_31    Helix-turn-helix domain
    4.4e-05   23.5   0.0    9.9e-05   22.3   0.0    1.7  1  HTH_3     Helix-turn-helix
  ------ inclusion threshold ------
      0.035   14.1   0.0      0.073   13.1   0.0    1.5  1  HTH_19    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3      0.54   3.2e+03       5       5 ..      31      31 ..       7      45 .. 0.63
   2 !   47.6   3.5   2.6e-16   1.5e-12       4      64 .]      56     115 ..      48     115 .. 0.96
   3 ?   -2.3   5.0      0.97   5.8e+03       1      17 [.     114     130 ..     114     131 .] 0.81

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.54
      HTH_31  5 l 5 
                +
  KIR61021.1 31 R 31
                1 PP

  == domain 2  score: 47.6 bits;  conditional E-value: 2.6e-16
      HTH_31   4 alLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerael 64 
                 ++L ++Re++GLs+e +Aer  +s s+l+r+E G+ g  s ++l++la+++ +dpa +++l
  KIR61021.1  56 HELTRMREEHGLSLEVAAERMDWSTSKLRRVELGAVG-ISVSDLRRLATLYLADPATVERL 115
                 5899********************************9.******************99876 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.97
      HTH_31   1 aLGalLralReraGLsq 17 
                 +L+++ r++R++ + s+
  KIR61021.1 114 RLAEQARRARRATRRSR 130
                 68899999999988887 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.7e-08   9.9e-05       3      47 ..      60     104 ..      58     112 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.7e-08
                 HHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHH CS
       HTH_3   3 elRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklaka 47 
                 ++R+++gls+e +Ae+++ s s ++r E G   +s++ l +la  
  KIR61021.1  60 RMREEHGLSLEVAAERMDWSTSKLRRVELGAVGISVSDLRRLATL 104
                 68****************************999*********976 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.2e-05     0.073       5      49 ..      59     102 ..      57     109 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
      HTH_19   5 keaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkia 49 
                  ++Ree gl++e  aer + s sk++  E g    +s ++l+++a
  KIR61021.1  59 TRMREEHGLSLEVAAERMDWSTSKLRRVELGAV-GISVSDLRRLA 102
                 689****************************76.89999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 911.48
//
Query:       KIR61022.1  [L=385]
Description: hypothetical protein TK50_24880 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-10   41.2   2.4    1.5e-10   41.2   2.4    4.4  6  HTH_31    Helix-turn-helix domain
    0.00046   20.2   0.0     0.0023   17.9   0.0    2.2  3  HTH_3     Helix-turn-helix
  ------ inclusion threshold ------
      0.049   13.7   0.0      0.093   12.8   0.0    1.4  1  HTH_19    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   2.4   2.6e-14   1.5e-10       3      60 ..       7      64 ..       5      67 .. 0.96
   2 ?   -2.1   0.1      0.88   5.3e+03      46      59 ..     127     140 ..     123     145 .. 0.71
   3 ?   -1.4   0.1      0.51   3.1e+03      43      56 ..     144     157 ..     136     158 .. 0.78
   4 ?   -3.3   0.6         2   1.2e+04      47      59 ..     172     184 ..     165     192 .. 0.65
   5 ?   -8.7   8.9         3   1.8e+04       2      48 ..     196     261 ..     195     277 .. 0.55
   6 ?   -1.5   0.2      0.57   3.4e+03      45      56 ..     372     383 ..     349     385 .] 0.65

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 2.6e-14
      HTH_31  3 GalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpae 60
                G++++ +R r+++sq+  A+rlg s+s++ ++E+G r + + ++l+ +a +l+ dp++
  KIR61022.1  7 GRRVAYWRGRRNMSQQVFADRLGRSKSWVDKVERGVRALDRVSTLREVAAVLRIDPDL 64
                999999**************************************************97 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.88
      HTH_31  46 vlealaralgldpa 59 
                 +l +la al +d++
  KIR61022.1 127 DLLRLAPALLVDGH 140
                 57788888877776 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.51
      HTH_31  43 spavlealaralgl 56 
                   ++ e+l++a++l
  KIR61022.1 144 GGGQAEQLLQAYRL 157
                 56788999999986 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 2
      HTH_31  47 lealaralgldpa 59 
                 + a+ ral + ++
  KIR61022.1 172 WLAADRALAVAGD 184
                 4556677777544 PP

  == domain 5  score: -8.7 bits;  conditional E-value: 3
      HTH_31   2 LGalLra.lRera...................GLsqeevAerlgvsestlsrlEqGrrgrpspavle 48 
                 LG+ Lra  R++a                   G   e +A ++ + ++ l   E G r     + l+
  KIR61022.1 196 LGQALRAaGRQQAafettivaahqvaplepggGTAAERAACAAALLQAALAAAEAGDR-STANEMLD 261
                 6777776334444566666666666666666545555555555555666666666666.35555555 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 0.57
      HTH_31  45 avlealaralgl 56 
                   l ala+a g+
  KIR61022.1 372 PHLLALAEATGV 383
                 345566666665 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.9e-07    0.0023       3      55 .]      12      65 ..      10      65 .. 0.89
   2 ?   -3.4   0.0       1.8   1.1e+04      24      41 ..     243     260 ..     242     266 .. 0.68
   3 ?   -1.8   0.0      0.57   3.4e+03      14      21 ..     376     383 ..     373     385 .] 0.55

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.9e-07
                HHHHHTTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3  3 elRkqlglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvsldel 55
                 +R  +++sq+ +A++lG s+s + + E+G ++  +++tl ++a +L +++d l
  KIR61022.1 12 YWRGRRNMSQQVFADRLGRSKSWVDKVERGvRALDRVSTLREVAAVLRIDPDLL 65
                57889*************************5555579************99976 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.8
                 HHHHHHHTTSSCSBHHHH CS
       HTH_3  24 stisriEnGernPsletl 41 
                 +++++ E G+r+   e+l
  KIR61022.1 243 AALAAAEAGDRSTANEML 260
                 567777888887766666 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.57
                 HHHHHHTS CS
       HTH_3  14 eLAeklGv 21 
                  LAe++Gv
  KIR61022.1 376 ALAEATGV 383
                 35566655 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.6e-05     0.093       1      61 [.       7      67 ..       7      70 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.6e-05
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aelllkiaealgidleyllq 61
                G+r+   R  ++++q+  a+rlg s+s   + E g +  ++  ++l+ +a  l id++ l+ 
  KIR61022.1  7 GRRVAYWRGRRNMSQQVFADRLGRSKSWVDKVERGVR-ALDrVSTLREVAAVLRIDPDLLIA 67
                8999999****************************99.777799999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2845.91
//
Query:       KIR61023.1  [L=78]
Description: hypothetical protein TK50_24885 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 572.23
//
Query:       KIR61024.1  [L=394]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-11   43.8   0.2    2.4e-11   43.8   0.2    3.7  3  HTH_31          Helix-turn-helix domain
    9.2e-10   38.4   0.3    2.6e-09   37.0   0.1    2.0  2  HTH_3           Helix-turn-helix
    1.5e-05   24.9   0.0    3.9e-05   23.6   0.0    1.8  2  HTH_19          Helix-turn-helix domain
    0.00089   19.6   0.0     0.0021   18.4   0.0    1.6  1  HTH_26          Cro/C1-type HTH DNA-binding domain
  ------ inclusion threshold ------
       0.03   14.7   0.5        3.7    7.9   0.0    2.6  2  AAA_assoc_2     AAA C-terminal domain
        0.1   12.5   0.4       0.73    9.8   0.0    2.6  3  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
       0.32   11.2   0.0       0.32   11.2   0.0    3.0  3  TPR_2           Tetratricopeptide repeat
        3.4    7.4   5.2        4.4    7.0   4.1    1.8  2  DSBA            DSBA-like thioredoxin domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.2   1.1e-14   2.4e-11       2      61 ..       6      66 ..       5      69 .. 0.92
   2 ?   -1.6   0.9       1.6   3.6e+03      22      50 ..     202     230 ..     184     244 .. 0.60
   3 ?    0.7   2.4       0.3   6.7e+02       7      27 ..     371     391 ..     365     394 .] 0.77

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.1e-14
      HTH_31  2 LGalLralReraG.LsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaer 61
                +G + + +R+r+G ++q+ +A+++g+s+ ++s++E G r + s+++l a+a al++++a++
  KIR61024.1  6 IGTRIKYWRARRGgMTQAVLAGLAGLSQPYISQIEAGHRSIDSRSTLIAIASALQVTVADL 66
                58888999**9955*******************************************9976 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.6
      HTH_31  22 erlgvsestlsrlEqGrrgrpspavleal 50 
                 e++gv +   +r ++  ++  + ++++++
  KIR61024.1 202 EAAGVAARAAGRTMTDLQPHATDRDVRQV 230
                 45555555555555555555555555555 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.3
      HTH_31   7 ralReraGLsqeevAerlgvs 27 
                 ra+R++    ++ +A+rl ++
  KIR61024.1 371 RARRRAVSKELRVLARRLDIT 391
                 556777799999****99877 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.1   1.1e-12   2.6e-09       1      55 []      10      66 ..      10      66 .. 0.91
   2 ?   -2.9   0.0       3.3   7.5e+03      13      22 ..     382     391 ..     371     393 .. 0.57

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1.1e-12
                HHHHHH.HTTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3  1 lkelRk.qlglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvsldel 55
                +k +R    g++q+ LA ++G+s+ +is+iE G +++ s +tl+++a aL+v+ ++l
  KIR61024.1 10 IKYWRArRGGMTQAVLAGLAGLSQPYISQIEAGhRSIDSRSTLIAIASALQVTVADL 66
                788888899************************66666789************9876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.3
                 HHHHHHHTSS CS
       HTH_3  13 eeLAeklGvs 22 
                 + LA++l+++
  KIR61024.1 382 RVLARRLDIT 391
                 4456666554 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.7e-08   3.9e-05      11      64 ..      18      71 ..       7      72 .. 0.89
   2 ?   -2.9   0.0       3.3   7.5e+03      15      25 ..     381     391 ..     369     393 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.7e-08
      HTH_19 11 lgltqeelaerlgisrskisaiEngkkdvps.aelllkiaealgidleyllqged 64
                 g+tq+ la+ +g s+ +is+iE g +  ++ +++l +ia al +++  ll++++
  KIR61024.1 18 GGMTQAVLAGLAGLSQPYISQIEAGHR-SIDsRSTLIAIASALQVTVADLLDQPG 71
                489**********************88.5665***************99999876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.3
      HTH_19  15 qeelaerlgis 25 
                 ++ la+rl+i+
  KIR61024.1 381 LRVLARRLDIT 391
                 45567777765 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   9.6e-07    0.0021      10      59 ..      19      68 ..       9      70 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 9.6e-07
      HTH_26 10 gitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLle 59
                g+t++ La  +g+s++ +s +  g  +  s +tL +i+ aL++t++DLl+
  KIR61024.1 19 GMTQAVLAGLAGLSQPYISQIEAGHRSIDSRSTLIAIASALQVTVADLLD 68
                67**********************9555555*****************95 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.022        49      11      39 ..      88     116 ..      79     172 .. 0.81
   2 ?    7.9   0.0    0.0017       3.7      18      71 ..     222     275 ..     213     278 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.022
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  AAA_assoc_2  11 alealaeladGDaRkaLnlLElaaeaaea 39 
                  + +al+e++dGD Rk     E  +++ +a
   KIR61024.1  88 IWAALLEISDGDRRKPADSREQTVASLHA 116
                  6689**********988888876666655 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0017
                  XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXHHH CS
  AAA_assoc_2  18 ladGDaRkaLnlLElaaeaaeakegkieitledleealqrkalryDkagdehYd 71 
                  + d D+R++L  L laa+  +a +g++    ++l ea  ++a++ D   d  ++
   KIR61024.1 222 ATDRDVRQVLGQLHLAAALRSAVDGQTSTAADHLSEAEREAATLGDPPRDGGFN 275
                  5678***************9999**************99999999987776665 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00032      0.73      10      56 ..      21      66 ..      18      70 .. 0.84
   2 ?   -2.6   0.1       2.3   5.1e+03       7      19 ..     229     241 ..     225     243 .. 0.81
   3 ?   -1.2   0.0      0.87     2e+03      11      21 ..     381     391 ..     364     394 .] 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00032
  YdaS_antitoxin 10 gqkaLAealgvsqqaVsqWlkgkkqvpa.ervpeIekatnGeVtreeL 56
                    +q+ LA + g sq+ +sq  +g ++++     ++I  a +  Vt  +L
      KIR61024.1 21 TQAVLAGLAGLSQPYISQIEAGHRSIDSrSTLIAIASALQ--VTVADL 66
                    699*********************9765156788888877..888887 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.3
  YdaS_antitoxin   7 ivGgqkaLAealg 19 
                     +v gq +LA al 
      KIR61024.1 229 QVLGQLHLAAALR 241
                     678999***9985 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.87
  YdaS_antitoxin  11 qkaLAealgvs 21 
                      + LA++l+++
      KIR61024.1 381 LRVLARRLDIT 391
                     56899999998 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.4      0.65   1.5e+03       1      25 [.     149     173 ..     149     181 .. 0.81
   2 ?   -3.0   0.4       4.9   1.1e+04      20      28 ..     191     199 ..     189     199 .. 0.83
   3 ?   11.2   0.0   0.00014      0.32       3      32 ..     322     352 ..     320     354 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.65
       TPR_2   1 aealynlGlayyklgdyeeAleafe 25 
                 aea y    ++++lg+   A++a +
  KIR61024.1 149 AEAAYLTSTCLRHLGHRHLAVDAAR 173
                 6888999999999999999988876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.9
       TPR_2  20 AleafekAl 28 
                 A+ a+ +Al
  KIR61024.1 191 ARFAYAQAL 199
                 889999997 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00014
       TPR_2   3 alynlGlayyklgdy.eeAleafekAleldP 32 
                 +++ lG+a++++g+   eA+ af +A  ++P
  KIR61024.1 322 YWMDLGRALAQSGRKdREAEVAFTRAEHIAP 352
                 89************************98888 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.1     0.002       4.4      88     164 ..     189     266 ..     167     266 .. 0.83
   2 ?   -3.2   0.0       2.7   6.1e+03      56      75 ..     372     391 ..     359     393 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.002
                 HHHHHHHHHHHHHGHHHHHHHHHHHHHTSSS-TSSHHHHHHHHHHTTS.HHHHHHHHTS..HHHHHHHHHHHHHHHHTT CS
        DSBA  88 raarlllaagaeglaekvvrelfealwsegqaitddqellevaekaGldaeeldeales..eavkeavrentaaaqslg 164
                  aar+++a +    a+ v+ +++ + +++ q++ +d ++++v+ +++l a++l+ a+++  + ++++++e +++a+ lg
  KIR61024.1 189 GAARFAYAQALPVEAAGVAARAAGRTMTDLQPHATDRDVRQVLGQLHL-AAALRSAVDGqtSTAADHLSEAEREAATLG 266
                 4555555555555999********************************.778888888844678899999999998775 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.7
                 HHHHHHHHHHHHHHHHHT.. CS
        DSBA  56 eklkylledlkrlaeaegip 75 
                 ++ +++ ++l++la + +i 
  KIR61024.1 372 ARRRAVSKELRVLARRLDIT 391
                 45566667777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2586.75
//
Query:       KIR61025.1  [L=67]
Description: hypothetical protein TK50_24895 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.019   15.0   0.7      0.022   14.8   0.7    1.1  1  Sensor          Putative sensor
      0.056   13.9   2.7      0.072   13.5   2.6    1.4  1  CopD            Copper resistance protein D
      0.088   12.6   1.8       0.15   11.9   1.8    1.3  1  Form-deh_trans  Formate dehydrogenase N, transmembrane


Domain annotation for each model (and alignments):
>> Sensor  Putative sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.7   3.8e-06     0.022      30      70 ..      10      49 ..       8      65 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.8e-06
      Sensor 30 lvGlplLalalllarglaaveRrrarlllglpvprphrape 70
                ++Gl+ La++++ ++++a+ eRrr + +++++++++ r+ +
  KIR61025.1 10 WLGLAGLAGVAATGVVVARAERRRRA-YTPEEIRARLRDRH 49
                89*********************977.77777776654333 PP

>> CopD  Copper resistance protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.6   1.2e-05     0.072       2      28 ..       3      29 ..       2      57 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
        CopD  2 ralrrFsrlalaavavvlvtGvvnall 28
                ++++++ +l+la +a v++tGvv a  
  KIR61025.1  3 QRMQWWKWLGLAGLAGVAATGVVVARA 29
                679********************9854 PP

>> Form-deh_trans  Formate dehydrogenase N, transmembrane
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.8   2.4e-05      0.15      11      28 ..       7      24 ..       6      25 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.4e-05
                    THHHHHHHHHHHHHHHHH CS
  Form-deh_trans 11 vlKplgalgmaatalagf 28
                    ++K+lg++g+a++a+ g+
      KIR61025.1  7 WWKWLGLAGLAGVAATGV 24
                    8*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 551.26
//
Query:       KIR61026.1  [L=244]
Description: hypothetical protein TK50_24900 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.064   13.4   0.0        1.4    9.0   0.0    2.1  2  Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX


Domain annotation for each model (and alignments):
>> Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   7.7e-05       1.4       3      39 ..      13      49 ..      12     127 .. 0.75
   2 ?    2.2   0.0    0.0094   1.7e+02     107     123 ..     188     203 ..     183     210 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 7.7e-05
  Peptidase_C92  3 ekGdiifqtsraslseainpatasefkHvgivvgeeg 39
                   ++Gd+   + r+   +ai+  t+s  +Hvg++v   +
     KIR61026.1 13 RTGDVWVFRGRSVPDRAIQFTTNSPVNHVGMAVVLDD 49
                   68999888999********************998766 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.0094
  Peptidase_C92 107 rlYCsklVakaykealg 123
                      YC ++Va  y ea+g
     KIR61026.1 188 TAYCAEVVAVTY-EAMG 203
                    68**********.7665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1642.11
//
Query:       KIR61027.1  [L=129]
Description: hypothetical protein TK50_24905 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0063   16.6   0.0     0.0091   16.1   0.0    1.3  1  SnoaL_4   SnoaL-like domain
  ------ inclusion threshold ------
      0.036   14.7   0.4      0.055   14.1   0.3    1.4  1  SnoaL_2   SnoaL-like domain


Domain annotation for each model (and alignments):
>> SnoaL_4  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     1e-06    0.0091       4     121 ..       5     120 ..       2     125 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1e-06
                 HHHHHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTS..--EESHHHHHHHHHSHHHHHH-EEEEE---EEE..EETTEEEEEEEEEEEEEETTEE CS
     SnoaL_4   4 edreaIrdlvarygyylDtkdweeladlFtedavvdytgvgegvlegrdairaalrealdgfaltqHllsnplie..ldgdtAtgrayllatlvrdgdg 100
                 +d +a  d+++ryg +l+t+d +++a++++  + v  +   +  + +++a++  +++a+++++  + l+ ++ +   ++   A  +  ++ ++    dg
  KIR61027.1   5 TDLDALTDFFNRYGVALTTGDVAAVAACYALPGLVVADTY-SFSFASPAAVALSFVGAAPDYHE-RELVAAHAVIgdVQPVSALLTEVAVEWE--FLDG 99 
                 688999***********************99655555543.45899999999999998655542.2233333222014444444444444444..4445 PP

                 EEEE..EEEEEEEEEEETTEE CS
     SnoaL_4 101 grqvlaggryedelvredggW 121
                 ++q + g+ry+  l+ +d+g 
  KIR61027.1 100 RGQRVPGERYRYLLRSTDDGP 120
                 556778888888888888875 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.3   6.1e-06     0.055       7      87 ..      20     105 ..      10     125 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.1e-06
                 HHHTTCHHHHHHTEE.EEEEEEET.TSEEESHHHHHH.HHHHHHHHEEEEEEEEEEEEEETT.......EEEEEEEEEEEEETTSSEEEEE CS
     SnoaL_2   7 alnagdldalaalfa.pdvvwedp.ggelrGreaira.ffralfaafpdlrfeihdvvadgd.......rvavewtvtgtipatgrgvtvr 87 
                 al++gd++a+aa++a p  v+ d+   ++  ++a++  f+ a+ +  ++  +  h+v+ d +       +vavew++      +grg +v+
  KIR61027.1  20 ALTTGDVAAVAACYAlPGLVVADTySFSFASPAAVALsFVGAAPDYHERELVAAHAVIGDVQpvsalltEVAVEWEFL-----DGRGQRVP 105
                 999***********99999999998778*****999945555555444444556666666656777777999999996.....67777774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 983.83
//
Query:       KIR61028.1  [L=252]
Description: hypothetical protein TK50_24910 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-08   34.8   0.1    2.4e-08   34.2   0.1    1.3  1  CBM_2     Cellulose binding domain


Domain annotation for each model (and alignments):
>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1   1.4e-12   2.4e-08       4     101 .]     152     248 ..     149     248 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 1.4e-12
                 EEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEE.....SEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EET CS
       CBM_2   4 tyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlW.....natvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvn 97 
                  y+v +++++ f ++v v+N++ s   gWtv++t+p g +++ +W     ++ +s+sG+++t+t+      + pG+s+ + f+  +t   + pt++tv+
  KIR61028.1 152 AYRVMNSYDGAFIGEVLVRNESRSQ-RGWTVRMTFP-GAHLVTAWiegapQGRISRSGDTWTFTS---GVDLTPGASVPLRFHFDQTRA-TRPTTCTVD 244
                 699*******************999.79********.77777788655556789********987...4689***********999987.59******* PP

                 TEE- CS
       CBM_2  98 GaaC 101
                 Ga C
  KIR61028.1 245 GAGC 248
                 **99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 1651.85
//
Query:       KIR61029.1  [L=1833]
Description: sulfonate ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-85  287.8   0.0    1.2e-78  265.0   0.0    3.8  4  Alpha-amylase    Alpha amylase, catalytic domain
    2.2e-58  196.4   0.0    1.7e-56  190.3   0.0    2.4  2  DUF3372          Domain of unknown function (DUF3372)
    7.4e-44  148.5   0.7    1.8e-21   76.8   0.6    2.8  2  PUD              Bacterial pullanase-associated domain
    4.8e-35  120.8   1.5    4.8e-35  120.8   1.5    3.6  4  Pullulanase_N2   Pullulanase N2 domain
    1.4e-09   38.2   0.1    4.9e-09   36.4   0.1    2.0  1  CBM_48           Carbohydrate-binding module 48 (Isoamylase N
    3.3e-05   24.5   2.3    3.3e-05   24.5   2.3    2.8  3  Big_7            Bacterial Ig domain
    7.9e-05   22.7   0.0     0.0059   16.7   0.0    2.6  2  Malt_amylase_C   Maltogenic Amylase, C-terminal domain
  ------ inclusion threshold ------
      0.016   15.4   0.1        5.5    7.3   0.0    2.7  2  Glyco_hydro_30C  Glycosyl hydrolase family 30 beta sandwich d
      0.045   14.1   2.2       0.68   10.3   0.0    3.9  3  DUF3459          Domain of unknown function (DUF3459)
       0.22   10.5   0.0        8.3    5.4   0.0    2.1  2  hDGE_amylase     Glycogen debranching enzyme, glucanotransfer


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.0   0.0   6.7e-82   1.2e-78       1     334 [.     116     485 ..     116     490 .. 0.87
   2 !   14.0   0.0   1.5e-05     0.027      52      85 ..    1337    1370 ..    1324    1383 .. 0.86
   3 ?    3.0   0.0     0.035        63     158     184 ..    1413    1440 ..    1400    1497 .. 0.70
   4 ?   -0.6   0.0      0.42   7.6e+02     274     328 ..    1585    1645 ..    1576    1649 .. 0.72

  Alignments for each domain:
  == domain 1  score: 265.0 bits;  conditional E-value: 6.7e-82
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE..........-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHC CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifk..........spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfke 86 
                    GDLkG+i+kLdY+++LG+taiwl+P+fk           ++ +hgY+i+d+t++dp+fGtne+lk+L++ ah +gikv lD++vNHt+d  +++++
     KIR61029.1 116 GDLKGVIDKLDYIQGLGTTAIWLAPVFKnrpvqgtgddVSAGYHGYWITDFTQVDPHFGTNEELKKLVQLAHRRGIKVYLDVIVNHTADVIKYAED 211
                    9*************************************777****************************************************888 PP

                    CHHSTTSGGGCCC-E......................................ESS-STTC-.....TTTTCSCEE...CTTTTCEEESSS-TTS- CS
  Alpha-amylase  87 slkkkgepkrdyyiwkegk................................eekeppnnwks.....lfdgsawey...dekaqeyylhlflkklp 142
                    ++++ +++ + y++ + +                                 +e              l+d +++++   +++a+e   ++++ +l+
     KIR61029.1 212 KYAYIDKKTAPYTDAQGRAfedrnyadgtrgfpkvnadsfpytptfdspadAE--------VkvpawLNDATMYHNrgdSTFAGENSEYGDFFGLD 299
                    88888888777777554447777788888888999999999776554443222........244555688888887777889999999******** PP

                    BB-TTTCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHTC..CGTT-EEEEE-TT-SCCCHCCCC-CGG-SICE CS
  Alpha-amylase 143 dLnteneevrkelkdvvkfwlekg.idGfRlDvvkhvskvealesngeflheftqalnetva..srkevmtvgEvssdasedlrvyttearlelem 235
                    dL+te++ev+  l +v+  w+    +dGfRlD+vkh +         ef+ +f   ++++++  ++k+++++gEv+s++ e + +y+  + l ++ 
     KIR61029.1 300 DLWTERPEVVAGLTKVYGDWIGATgVDGFRLDTVKHANL--------EFWPQFSRGIERAAEkaGKKDFFMFGEVYSADPEITSTYVRRGGLPAT- 386
                    *********************9877************99........***********9998889****************99999999998888. PP

                    CCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-C..CCTTCEEES--TTS--HHHHTTSSTTTT...HHHHHHHHHCCCTSSSEEEEETT CS
  Alpha-amylase 236 vldfphldvaqkakikeqlksisakklkellkkwlkalee..aaeeavtflgnHDqeRilsrlgddsaea...ekklklaaillltlrGvpviYyG 326
                     ldf ++++a+++      +  sak+l+++++++  +      a++ +tflgnHD+ Ri+s+++    +    ++++ la +l+++ rG pv+Y G
     KIR61029.1 387 -LDFAFQEAARGYT----AAGGSAKALADVYARDDLYAARdtDANRLTTFLGNHDMGRIGSFVAAAGGDDaaqLRRTTLAHELMFLTRGQPVVYSG 477
                    .************9....44445888888887655444443589999**************9876665545569********************** PP

                    CCCT---- CS
  Alpha-amylase 327 eEigmtgg 334
                    +E+g+tg 
     KIR61029.1 478 DEQGFTGP 485
                    ******96 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.5e-05
                     CCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCH CS
  Alpha-amylase   52 edlkeLiskahekgikvilDlVvNHtsdehewfk 85  
                     +++ ++++ +   g++v++D+V NHts +   +k
     KIR61029.1 1337 AEFRRMVAGINGAGLRVVMDVVYNHTSAAGTDAK 1370
                     68999**********************9876554 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.035
                     CCCCCCTTT.-SEEEETTCCCTTTCCCC CS
  Alpha-amylase  158 vvkfwlekg.idGfRlDvvkhvskveal 184 
                      +  w +   +dGfR D + h +k++ l
     KIR61029.1 1413 SLVTWAKAYkVDGFRFDLMGHHPKANIL 1440
                     5567888777***********9996554 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.42
                     -CCCTTCEEES--TTS--HHHHTTSSTTTT......HHHHHHHHHCCCTSSSEEEEETTCC CS
  Alpha-amylase  274 eeaaeeavtflgnHDqeRilsrlgddsaea......ekklklaaillltlrGvpviYyGeE 328 
                     + a  eavt+++ HD+e +   l+++ ++a       +   la++ +++ +G+ ++  G E
     KIR61029.1 1585 TAAPGEAVTYVDAHDNEILYDALAYKLPQAtsatdrARMQVLALATVVMGQGTGFVTAGSE 1645
                     44567899****************9999888886643333334444455577777777766 PP

>> DUF3372  Domain of unknown function (DUF3372)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.02        37     103     164 ..     571     627 ..     544     630 .. 0.73
   2 !  190.3   0.0   9.5e-60   1.7e-56       2     166 ..    1672    1832 ..    1671    1833 .] 0.99

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.02
     DUF3372 103 dalvvvfNaspeeqsitvpelagkkleLhpvqaesadevvkqasfeeatgtftvPartvaVF 164
                  + vv +N ++++q++tv++ +  + +   ++     +   +a ++  + t+tvPa++++V+
  KIR61029.1 571 VEYVVAVNNADTAQTVTVDTWSP-GTAFAGIHGGTGTP---TAGADG-KLTLTVPAMSAVVY 627
                 46799999999999999988775.56677777665433...334444.57999****99998 PP

  == domain 2  score: 190.3 bits;  conditional E-value: 9.5e-60
     DUF3372    2 qdnnfgvGLPpaeknednwplikplladpalkpsaadiaaasaafqelLriRksspLfrLrtaeevqkrvsFhntGpdqqpGlivmsiddgtgladl 98  
                  q n+fg GLPpa++n+d+wp++kplladp+l p++a i+ a+a++ elLr+R+ssp+f L+tae+vqkrv+F+ +G++++pG+++m++d     + l
  KIR61029.1 1672 QGNGFGAGLPPAQDNQDKWPYAKPLLADPKLVPDCAAIDLADARYAELLRVRESSPVFGLDTAEQVQKRVAFPLSGAAETPGVLTMTLDA----RGL 1764
                  89****************************************************************************************....99* PP

     DUF3372   99 dpkldalvvvfNaspeeqsitvpelagkkleLhpvqaesadevvkqasfeeatgtftvPartvaVFvk 166 
                    ++++++vvfNa+p++ ++tvp+l+g++++Lhpv+++sad+v+++asf++ +gtftvPar+vaVFv+
  KIR61029.1 1765 GGQWRSVTVVFNATPQAATQTVPGLRGSDVALHPVLRASADPVLRTASFDRGSGTFTVPARSVAVFVQ 1832
                  *******************************************************************8 PP

>> PUD  Bacterial pullanase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.6   9.9e-25   1.8e-21       2      91 ..     742     836 ..     741     837 .. 0.89
   2 !   68.9   0.0     3e-22   5.3e-19       2      84 ..     855     940 ..     854     944 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 9.9e-25
                 EEEEEE-TT---TTEEEEEES.----EE......E---EEETTEEEEEEEESS--.EEEEEEE..ETTEEEE.EEEEE-B.TTEEEEEEETT----B CS
         PUD   2 vrihYkrgdgnydgwgLwlWgdgedgss......fpftgtddygayadvelkedd.kvgfiirkkgddkdvgeDrkidlskdgvnevwlvsgdekvy 91 
                 v++hY+r  g y++wgL+ Wgd   +         pf+g+d+yg++a+v+lk ++ +vgf++++  ++kdv +Dr++d+++  ++evw+++gd+++y
  KIR61029.1 742 VVVHYQRPAGGYADWGLYAWGDIDPAYVtewpkgQPFAGEDSYGRFAWVKLKPGAkSVGFLVVDSAGNKDVAADRTVDVTQ--TGEVWVKQGDAALY 836
                 79*****999**********544443335677788****************8777********99999***********98..***********999 PP

  == domain 2  score: 68.9 bits;  conditional E-value: 3e-22
                 EEEEEE-TT---TTEEEEEE.S.----EE.....E---EEETTEEEEEEEESS--.EEEEEEE..ETTEEEE.EEEEE-B.TTEEEEEEE CS
         PUD   2 vrihYkrgdgnydgwgLwlW.gdgedgss.....fpftgtddygayadvelkedd.kvgfiirkkgddkdvgeDrkidlskdgvnevwlv 84 
                 + ihY+r+dgnydgwgL+lW g  +++ +     +++++ d++ga++ v+l  ++  +++i++ +gd+kd+ +D+ +d+++  ++evwl 
  KIR61029.1 855 ALIHYRRADGNYDGWGLHLWdG--AANPTdwsspLKPEKVDSFGAVFRVPLAAGAtGLSYIVH-NGDTKDLPDDQRLDFAT-AGREVWLL 940
                 67******************42..33333356799****************8888*****888.7889************8.******96 PP

>> Pullulanase_N2  Pullulanase N2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       3.6   6.4e+03      32      69 ..     599     637 ..     574     664 .. 0.65
   2 !  120.8   1.5   2.7e-38   4.8e-35       1     112 []     963    1079 ..     963    1079 .. 0.93
   3 ?   -2.2   0.0       4.2   7.5e+03      65      92 ..    1603    1630 ..    1575    1637 .. 0.83
   4 ?   -1.2   0.0         2   3.6e+03      33      69 ..    1757    1793 ..    1738    1810 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.6
  Pullulanase_N2  32 glaadedg.vegadealeLtpagltaaqkakfphLagyt 69 
                     g+    ++ ++gad +l+Lt+ +++a + ++ +++ + +
      KIR61029.1 599 GIHGGTGTpTAGADGKLTLTVPAMSAVVYRAARAIPQAA 637
                     444443345788899999999988877666555554433 PP

  == domain 2  score: 120.8 bits;  conditional E-value: 2.7e-38
  Pullulanase_N2    1 earAhWvdrrtlawpasaaaa.svrLvasaeaglaadedgvegadealeLtpa..gltaaqkakfphLagytalrvpee..aqvkellrgqlv 88  
                      ++rA+W+dr+t+aw++ ++++ ++ Lva++++g+++ +++++g++++l+L+++  glt+aq+a+fphL++y+a++++++  a+v+++lrgqlv
      KIR61029.1  963 KQRAQWIDRSTVAWQTGETDGrTYALVAAPTGGVSVVDGELSGTYTSLPLRAQhnGLTEAQRARFPHLWAYRAFTLDRAdlAKVPAALRGQLV 1055
                      58*************9987662678***********9999***********9999*********************8543478********** PP

  Pullulanase_N2   89 vaaadadgkvlaaTgVQlpgvLDD 112 
                      v+++da+g++l aTgVQ+pgvLDD
      KIR61029.1 1056 VTERDAEGALLGATGVQVPGVLDD 1079
                      ***********************9 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.2
  Pullulanase_N2   65 Lagytalrvpeeaqvkellrgqlvvaaa 92  
                      L +  a+++p+++ ++   r q+++ a+
      KIR61029.1 1603 LYDALAYKLPQATSATDRARMQVLALAT 1630
                      6678899999999999999999988776 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 2
  Pullulanase_N2   33 laadedgvegadealeLtpagltaaqkakfphLagyt 69  
                      +++d++g++g+ +++++  ++ ++a+++++p L+g  
      KIR61029.1 1757 MTLDARGLGGQWRSVTVVFNATPQAATQTVPGLRGSD 1793
                      5678888888889999999999*********999875 PP

>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1   2.7e-12   4.9e-09       2      84 .]    1089    1173 ..    1088    1173 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 2.7e-12
                  SEEEEESSCEEEEEEEE-TTSSEEEEEECGTT.TEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEEEETT...S..CEEEE--TT- CS
      CBM_48    2 lGahvsedekgvnfrvwapnAekVslvldfnn.wdaeeiplkrrrtggvWelflpgdlphgslrYkyrvkgps...g..ekklllDPya 84  
                  lG ++ +     +++vwap+A++V+l l++      + + ++r++  gvW++  ++ ++ g+  Y+yrv   +       +  ++DPy+
  KIR61029.1 1089 LGPTFAGR--VPTLSVWAPTARSVALELSDTPtAAPRVVAMRRDDRTGVWSVRGEPGWT-GK-YYRYRVSAWQpaaQrmVTASVTDPYS 1173
                  78888766..7899*****************9888999*********************.66.9*****9999766257899999**96 PP

>> Big_7  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       4.4   7.9e+03      44      70 .]     586     619 ..     547     619 .. 0.50
   2 !   24.5   2.3   1.9e-08   3.3e-05       1      65 [.     640     706 ..     640     708 .. 0.86
   3 ?   -3.5   0.0        10   1.8e+04      44      56 ..    1164    1176 ..    1152    1183 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.4
                 EEEE-SSSEEEEEE-..............-...SEEEEEEE CS
       Big_7  44 lgtdtsapysltwtt..............taltagthtltV 70 
                 ++ d       tw++              ta+++g  tltV
  KIR61029.1 586 VTVD-------TWSPgtafagihggtgtpTAGADGKLTLTV 619
                 2222.......233333333334444444556666666665 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 1.9e-08
                 XEEEEEE--TT--EBTSEEEEEEEEE-S.S-EEEEEEEETTEE...EEEE-SSSEEEEEE--...SEE CS
       Big_7   1 PtvtitsPangatvsggtvtisasAsdd.ggvskVefyvdgtl.g.lgtdtsapysltwtttaltagt 65 
                 Pt+tit+Pa+g+ v  +  +++a+++ d  +  +V  +v g   + lg+  +apy++  + t l++gt
  KIR61029.1 640 PTITITAPAPGTPVA-TRAAVTAQVTGDpLATVTVAARVAGGRwTlLGSAHTAPYTVHHDLTGLAGGT 706
                 9**************.************655555666677776348****************999998 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 10
                  EEEE-SSSEEEEE CS
       Big_7   44 lgtdtsapysltw 56  
                  ++++ ++pys+++
  KIR61029.1 1164 VTASVTDPYSVAL 1176
                  3444455555555 PP

>> Malt_amylase_C  Maltogenic Amylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.3e-06    0.0059       8      74 ..     554     625 ..     549     626 .. 0.78
   2 ?    3.1   0.0     0.057     1e+02      24      46 ..    1770    1792 ..    1761    1796 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.3e-06
                     -S-TTEEEEEEEETTEE..EEEEEESS-EEEEE--G.GGTT-EEEETTTTEE-----SS..EEEEE-TT-EE CS
  Malt_amylase_C   8 adnrkvlaYlReyedet..ilvvaNrsaqaveldls.elagrvpvelfggeefpaigel..ytltLppygfy 74 
                     ad + v+a+ R ++ ++   +v++N+++ a+++++     g+ +  + gg+  p+ g +  +tlt+p+ +++
      KIR61029.1 554 ADGPGVFAFSRIDPRQRveYVVAVNNADTAQTVTVDtWSPGTAFAGIHGGTGTPTAGADgkLTLTVPAMSAV 625
                     56699**********77334777776666666666633678888999999*******98899***9998876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.057
                      EEEEEEESS-EEEEE--GGGTT- CS
  Malt_amylase_C   24 tilvvaNrsaqaveldlselagr 46  
                       + vv+N ++qa++ +++ l+g+
      KIR61029.1 1770 SVTVVFNATPQAATQTVPGLRGS 1792
                      689**************988886 PP

>> Glyco_hydro_30C  Glycosyl hydrolase family 30 beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0031       5.5      31      62 ..     574     624 ..     560     627 .. 0.76
   2 ?    5.3   0.0     0.013        24      30      63 ..    1771    1828 ..    1769    1830 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0031
  Glyco_hydro_30C  31 vvilNrsessvtitvs...................dsskskgslsvparSi 62 
                      vv++N++++++t+tv+                    + ++k +l+vpa S 
       KIR61029.1 574 VVAVNNADTAQTVTVDtwspgtafagihggtgtptAGADGKLTLTVPAMSA 624
                      99*************977777777777666666553333667777799886 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.013
  Glyco_hydro_30C   30 vvvilNrsessvtitvs..........................dsskskgslsvparSiv 63  
                       v+v++N + ++ t tv                           d  +++g+++vparS++
       KIR61029.1 1771 VTVVFNATPQAATQTVPglrgsdvalhpvlrasadpvlrtasfD--RGSGTFTVPARSVA 1828
                       89**************9998888888888888888877777654..3779********96 PP

>> DUF3459  Domain of unknown function (DUF3459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00038      0.68       7      90 ..     535     626 ..     530     627 .. 0.62
   2 ?   -2.6   0.0       3.9   6.9e+03      45      62 ..    1108    1129 ..    1099    1159 .. 0.68
   3 ?    0.3   0.3      0.51   9.1e+02      40      90 ..    1766    1829 ..    1715    1830 .. 0.46

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00038
                 HHHHHHCCCTT--CGGEEEEEEECTCEEEEEEE..ETTEEEEEEEE-SSCGCCS-.....SS---SEEEE.ECT--S........SSEE-TTEEEE CS
     DUF3459   7 aLRreePaLadarrgglevavlgdgallvrwrl..gdgrllrllaNLgdepvtlp.....pegaagkllf.sseaaragg....dagrlppesvvv 90 
                 aLR+++PaL+d   +  ++a++g+g + +  r    ++ + ++++N  d+++t++     p g+a   ++  ++++ a g     + ++p+ s+vv
  KIR61029.1 535 ALRQAHPALRDG-VQVTRYAADGPGVF-AFSRIdpRQRVEYVVAVNNADTAQTVTvdtwsP-GTAFAGIHgGTGTPTA-GadgkLTLTVPAMSAVV 626
                 8***********.55556678888877.555552344446679999999888888657743.3333333303333333.23656666777777766 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.9
                  EEEEEE-SSCGCCS-....SS- CS
     DUF3459   45 lrllaNLgdepvtlp....peg 62  
                   ++++ L+d+p ++p    + +
  KIR61029.1 1108 RSVALELSDTPTAAPrvvaMRR 1129
                  4689999999999996665333 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.51
                  ETTEEEEEEEE-SS..CGCCS-.............SS---SEEEEECT--S....SSEE-TTEEEE CS
     DUF3459   40 gdgrllrllaNLgd..epvtlp.............pegaagkllfsseaaraggdagrlppesvvv 90  
                  g+ r +++++N  +  +++  +               +a +++++++ +  +g+++ ++p++sv+v
  KIR61029.1 1766 GQWRSVTVVFNATPqaATQ--TvpglrgsdvalhpVLRASADPVLRTASFDRGSGTFTVPARSVAV 1829
                  3333444455544422223..244666643333333333333444444444444666677777665 PP

>> hDGE_amylase  Glycogen debranching enzyme, glucanotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0046       8.3      43     112 ..     146     211 ..     141     227 .. 0.72
   2 ?    2.8   0.0     0.028        51      89     105 ..    1348    1364 ..    1330    1373 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0046
                   --EEE-TT--T....TSEEEEEEE-TTT-.....SSC.HHHHHHHHHHHHHH--EEEEEE--SEEETT-CCCCC CS
  hDGE_amylase  43 PlqelGesnSp....YSiadqleldkelfeekdkeekeedveklvkklekeygllsltDvVlnHtannskwlee 112
                   P+q  G   S+    Y i+d +++d+++        + e+++klv+ + +  g+    Dv+ nHta+  k+ e+
    KIR61029.1 146 PVQGTGDDVSAgyhgYWITDFTQVDPHFG-------TNEELKKLVQLA-HRRGIKVYLDVIVNHTADVIKYAED 211
                   56666665554333489999999999884.......346789999755.5679*************97776655 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.028
                    HH--EEEEEE--SEEET CS
  hDGE_amylase   89 eygllsltDvVlnHtan 105 
                      gl  ++DvV+nHt+ 
    KIR61029.1 1348 GAGLRVVMDVVYNHTSA 1364
                    468899*********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1833 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.45
# Mc/sec: 12138.22
//
Query:       KIR61030.1  [L=501]
Description: hypothetical protein TK50_24920 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3737.56
//
Query:       KIR61031.1  [L=502]
Description: hypothetical protein TK50_24930 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3536.26
//
Query:       KIR61032.1  [L=493]
Description: Xaa-Pro aminopeptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-45  154.9   0.1    3.1e-45  154.4   0.1    1.2  1  Peptidase_M24  Metallopeptidase family M24
      8e-22   77.3   0.0    1.4e-21   76.5   0.0    1.4  1  AMP_N          Aminopeptidase P, N-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   0.1   3.5e-49   3.1e-45       3     209 .]     224     460 ..     222     460 .. 0.89

  Alignments for each domain:
  == domain 1  score: 154.4 bits;  conditional E-value: 3.5e-49
                    HHHHHHHHHHHHHHHHHH..HHTTCBHHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTTBCSSSB--TTEEEEEEEEEEET.TEEEEEEEE CS
  Peptidase_M24   3 irkaariasaaleavlea..ikpgvterelaaeieattlkrhgarglafppivasgenaavlhytpndrvlkegdlvlidagaeyd.gyasDitrT 95 
                    ++ a +++ + +e v++     +gv+er l+ ++    ++rh ++++++  iv++ge+a +lh+++n+ + ++g+l+l+d+g+e +  y++D+tr+
     KIR61032.1 224 LQDAIDATVRGFEDVARVlpADRGVSERLLEGVFAL--RARHDGNDVGYGSIVGAGEHATILHWVHNHGTTRPGELLLMDMGVENRnLYTADVTRV 317
                    67889999999999988644558************4..59999*****************************************9889******** PP

                    E.ECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTB.....................CCGBSSCSEEEESSSSSEEEEEES CS
  Peptidase_M24  96 v.lvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesagl.....................akffphglGHgvGlevhdegpsvs 169
                    + + G+ftp qr++y++v + q+a+i+ +kpGv++++++ ++ +vl+++ l                     ++   hg GH +G++vhd  ++  
     KIR61032.1 318 LpVGGRFTPLQRQVYDIVYASQQAGIDFIKPGVKFKDVHLTCMRVLAEG-LhelgllpvsvdeamdekstvyRRWTLHGFGHMLGIDVHDC-SNAR 411
                    *5556******************************************94.4445669999999999999999888899************9.6654 PP

                    SSTTCSSB--TTBEEEEEEEEEEETTT........E.EEEEBEEEEEES CS
  Peptidase_M24 170 resndgrkleeGmvftiEpgiyfapge........g.gvriedtvlvte 209
                    +e+ ++  l eG v+t+Epg+yf p+         g g+ried+vlvt+
     KIR61032.1 412 KEAYRDGALGEGYVLTVEPGLYFQPEDdlvpeelrGiGIRIEDDVLVTA 460
                    44559*****************998555666677877**********95 PP

>> AMP_N  Aminopeptidase P, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   1.5e-25   1.4e-21       1     118 [.      49     172 ..      49     176 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 1.5e-25
                 HHHHHHHHHHHS-SSEEEEEE-----EEETTEE------HHHHHHH----SS-EEEEEESSEEEE...EEEE----HH..........HHHHH----HH CS
       AMP_N   1 yaerRkrllealpensvvilaagkekyrsgdveypFrqnsdFlYltGfnepdavlvlekeedkkehkstLfvprkdpe..........kelWdGarlgl 89 
                 +a+rR++l +a+p ++ +++++g ek+r +d+ey+Fr  sdF YltG n pd+vlvl+++   + h+ +L++++++             elW G+r++l
  KIR61032.1  49 HAKRRAALSAAFP-GETLVIPTGGEKTRANDTEYRFRPGSDFAYLTGDNDPDSVLVLRPNG--SGHDPVLYMRPRSSRdndeffrsrhGELWVGRRHTL 144
                 799*********8.9******************************************6544..7899******655533334444444*********** PP

                 HHHHHHHT-SEEEEGGGHHHHHHHHHTT- CS
       AMP_N  90 eeakelfgvdeaepidelesalakllkgs 118
                  e  + +g   + +++el++ala+l+ g+
  KIR61032.1 145 AEKSTELGLP-TADLAELDAALADLAPGR 172
                 *********8.99*********9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3490.65
//
Query:       KIR61033.1  [L=371]
Description: chitin-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-40  138.7   0.3      1e-39  137.2   0.0    1.7  2  LPMO_10   Lytic polysaccharide mono-oxygenase, cellulose-degr
    1.1e-23   83.4   9.0    2.8e-23   82.1   9.0    1.7  1  CBM_2     Cellulose binding domain


Domain annotation for each model (and alignments):
>> LPMO_10  Lytic polysaccharide mono-oxygenase, cellulose-degrading
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.2   0.0   1.1e-43     1e-39       1     194 []      33     222 ..      33     222 .. 0.94
   2 ?   -0.9   0.0      0.24   2.1e+03      57     108 ..     268     326 ..     248     343 .. 0.54

  Alignments for each domain:
  == domain 1  score: 137.2 bits;  conditional E-value: 1.1e-43
                 -EEEEETTBHHHHHHH.HGTCTTTTTHHHHSHH....H......HTHGHHHTTTG-EEET...SHHHHSSTT-TTTTTTHHHTT....GGGGT.TSTS- CS
     LPMO_10   1 HGylssPksRqarcde.gkegpetspqspnseavearC......ggaavqyeensvekek...rlkaappdgglcgagdsrpneaggksglde.rgawa 88 
                 HG+ ++P +R+++c++ g +  +t + +p ++a    C      +ga++ y++ sv +++   r+   +pdg+lc++g+  p +    sg+d+ r++w+
  KIR61033.1  33 HGASMTPGARTYLCWKdGLT--PTGEIKPINPA----CsaavaeNGANSLYNWFSVLRSDaggRTVGYIPDGKLCSGGN--PGF----SGYDApRTDWP 119
                 **************996655..79999999999....7777799899999*********9*******************..9**....888887889** PP

                 -...EEEESESEEEEEEEESS-S-EEEEEEEEE-TT--TTS-HHGGGEE..EBEEEESSCEES..CCTCEEEEEEEEETSS--EEEEEEEEEEE.TSTS CS
     LPMO_10  89 kpvqttytegseiefeveltapHktghfefyitkecfdptkpLtwadle..pfatvsdpksra..pskeatyyrkvklPegrtgehvllqvWqyvtans 183
                     t++t+g  ++f++  +a+H +g+f fy+tk+ + pt+ L w+dle  pf tv++p+++    ++e++yy++ ++P+g++g+h+++++W +  + +
  KIR61033.1 120 L---THLTAGARFDFKYSNWAHH-PGTFYFYVTKDSWSPTRALAWSDLEeqPFLTVTNPPQNGpvGTNEGHYYFSGNMPSGKSGRHIIYSRWVR--S-D 211
                 9...*******************.9******************************9999998898888999999********************..8.8 PP

                 SSEEEEEEEEE CS
     LPMO_10 184 tqeaFynCaDv 194
                 +qe+F++C+Dv
  KIR61033.1 212 SQENFFGCSDV 222
                 88********8 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.24
                 HHSSTT-TTTTTTH.....HHTT....GGGGT...TST.S--...EEEESESEEEEEEEES CS
     LPMO_10  57 aappdgglcgagds.....rpneaggksglde...rga.wakpvqttytegseiefevelt 108
                 ++pp+gg c a ++      + ++g+ + ++    + + w++  + t + g++i+  ++ t
  KIR61033.1 268 TPPPAGGDCMATYKvvsswSGGFQGEVAIMNHgstPFTgWKA--TLTWSTGQTINSLWNGT 326
                 556666666655555555422222222223332222224655..45566666666555544 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   9.0   3.1e-27   2.8e-23       1      90 [.     276     365 ..     276     370 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 3.1e-27
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS--- CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsa 90 
                 + aty+v s+W++Gf+++v++ N+gs++ +gW+ ++t+++gq++ +lWn+t+++sG++vt+tn ++Ngt+ap g++ fGf +s+++s ++
  KIR61033.1 276 CMATYKVVSSWSGGFQGEVAIMNHGSTPFTGWKATLTWSTGQTINSLWNGTYTTSGSTVTVTNSPYNGTVAPEGTTAFGFVASGASSLPT 365
                 789*********************************************************************************999744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.18s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2988.04
//
Query:       KIR61034.1  [L=311]
Description: sugar kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-48  164.6   0.8    3.6e-48  164.4   0.8    1.0  1  PfkB      pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.4   0.8     2e-52   3.6e-48       2     301 ..       2     301 ..       1     302 [. 0.90

  Alignments for each domain:
  == domain 1  score: 164.4 bits;  conditional E-value: 2e-52
                 EEEEEEEEEEEEEEEECSSHTTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTT CS
        PfkB   2 tkvvviGealidliavseklegelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvded 100
                  + vv+Gealidl  ++ +       ++ +++  GG ++NvAv++arlg++v+f+g +GdD +++++++ l ++gv  ++ + ++   t+la+++ ++ 
  KIR61034.1   2 GYAVVLGEALIDLLDAECD------GQPVFRQAIGGGPLNVAVGVARLGGSVQFVGSLGDDALADRIRAFLTDAGVGLAGAVTVPA-ATALAVATHTG- 92 
                 57899*******9888766......799******************************************************5555.77777777776. PP

                 SEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEES.EECTTSHHHHHHHHHHHHHHTTE...EEEEECESSSHH......HHHHHHHHHCTESEEEE CS
        PfkB 101 gertivfnrgaaadltkeeleededlleeadllyisg.llsselpeavleelaeaaknggt...fdpnlldplgaq......fkeallellaladllkp 189
                 +e ++ f+ ++ +    +  + d+dl++ ad+ly ++ +l    + +vl++++ a + +g    fdpn++++l +        ++++ e+ a a+l+k+
  KIR61034.1  93 AEPDFRFYGEPPSYGLLAADDLDADLVGGADVLYCGSiVLL---SPTVLAAARRAWSLAGGlrvFDPNVRPRLLDGpaalaaLRQTVAEFAASAHLVKL 188
                 5****************9999****************5333...44555555555554444456**********99****999**************** PP

                 EHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE.TTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHT......THHHHHHHHH CS
        PfkB 190 neeElealtgekledieealaalhklkakgaktvvvtlGkeGalvve.kdgelkvpavpkvkvvDttGAGDsfvggflaalle......gksleealrf 281
                 +++++e l   +   +e ++a+l +    ga+tvvvtlG+eGa+v+  + + ++vpa pkv +vD tGAGDs++g+++a ll        +++ + ++f
  KIR61034.1 189 SAADAELLYPGE--PVEGVAAYLRE---LGAATVVVTLGAEGAVVAAaNADPVRVPA-PKVRAVDATGAGDSVMGALVAELLVdgeptdPADWHRRVAF 281
                 ********9999..9********99...799****************999*******.************************9999*99********** PP

                 HHHHHHHHHTSSSSSTCSCC CS
        PfkB 282 anavAalvvqkkgaiaslpt 301
                 a +vA lv++++g + ++pt
  KIR61034.1 282 ALRVAGLVCESPGGAVAMPT 301
                 **************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2449.69
//
Query:       KIR61035.1  [L=276]
Description: beta-lactamase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-23   83.0   9.3    5.2e-23   82.1   9.3    1.4  1  Lactamase_B  Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   9.3   2.9e-27   5.2e-23       4     197 .]      20     214 ..      18     214 .. 0.92

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 2.9e-27
                  CSSEEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHH.... CS
  Lactamase_B   4 dpvnsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkgll.... 97 
                  + vn++l++gdg ++++Dt++++ +a ++   aa++     + +v++TH+H+DH++g++ ++    +pv+a++ +a al+++  +  + + +      
   KIR61035.1  20 LDVNVTLVVGDGAALVVDTLSTAGQAAEL--VAAARAVTPHPWTVVNTHHHFDHCFGNAVVAGDPAAPVYAHEVAAVALRDRPDEVRRAAYEEMraar 115
                  579************************97..5666666667789****************************************88887777779*** PP

                  .......TTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHHHHH CS
  Lactamase_B  98 .......lagvsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridltlrgaevrdpsdaekyldsllklagl 188
                         + +    +  v++ e+ +++ggrr +  ++g+gh+  ++vv+ ++++vl++GD++ +   + +++        +p ++ ++l+++l+l + 
   KIR61035.1 116 pelaaelANTRLLAPTHVVRGETVLDVGGRRVVLRHPGHGHTDADLVVHVPDADVLVAGDLVEQSGPPAFEE-------SYPLQWPDALAEVLRLTT- 205
                  ******98888888999**********************************************999999999.......9*************9955. PP

                  CHSEEEESS CS
  Lactamase_B 189 kaevlvpgH 197
                  +  v+vpgH
   KIR61035.1 206 PGTVVVPGH 214
                  777777888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2000.67
//
Query:       KIR61036.1  [L=141]
Description: thioesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-07   30.4   1.4    4.4e-07   30.2   0.7    1.5  2  4HBT            Thioesterase superfamily
     0.0058   16.8   0.1     0.0096   16.1   0.1    1.3  1  DUF4442         Domain of unknown function (DUF4442)
  ------ inclusion threshold ------
      0.058   13.9   0.0      0.068   13.7   0.0    1.3  1  4HBT_2          Thioesterase-like superfamily
      0.076   12.7   0.2      0.076   12.7   0.2    2.0  2  CysG_dimeriser  Sirohaem synthase dimerisation region


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.2     1e+04      52      58 ..      17      23 ..       9      34 .. 0.53
   2 !   30.2   0.7   9.9e-11   4.4e-07       7      78 ..      41     112 ..      37     113 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.2
                EEEEEEE CS
        4HBT 52 vearvlr 58
                ve +v+ 
  KIR61036.1 17 VELTVTD 23
                3333333 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 9.9e-11
                 HHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCEE CS
        4HBT   7 GvylallDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrlv 78 
                 ++++al++ a  aa ++   ++   v+ + ++d+l+p  +g +++v+ar++ + ++++ +ev+v+d+ g+ v
  KIR61036.1  41 PRVVALAEAATVAATAGALPPDGTTVGTRVELDHLAPTPVGRTVVVQARLTDVDGRRLGFEVTVTDDAGQSV 112
                 577889998888888888888*********************************************998766 PP

>> DUF4442  Domain of unknown function (DUF4442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.1e-06    0.0096      54     128 ..      44     117 ..      40     121 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHHHHHHHS-TTEEEEEEEEEEEE-S---S-EEEEEE-TTS-TT--EEEEEEEEEEETTE.EEEEEEE CS
     DUF4442  54 cnlaElamGllaeatlpdthrwipkgmevdYlakatgdltavaelepedvgekeelvvevevrdekgeevvraei 128
                 ++laE+a+ + + ++lp +   + + +e d la++  + t v ++   dv+ ++ l +ev+v+d++g++v+r+++
  KIR61036.1  44 VALAEAATVAATAGALPPDGTTVGTRVELDHLAPTPVGRTVVVQARLTDVD-GRRLGFEVTVTDDAGQSVARGRV 117
                 689******************************987777777777777776.789****************9987 PP

>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.5e-05     0.068      52     108 ..      71     126 ..      12     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
      4HBT_2  52 hvryrrplkfpdrltvefrvididaktliiehrflsnadgkk.aarveerivvmdygk 108
                 +++   p   +  + v+ r++d+d ++l +e+ +++  d+++ +ar++ + v++d+  
  KIR61036.1  71 ELDHLAPTPVGRTVVVQARLTDVDGRRLGFEVTVTD--DAGQsVARGRVERVLVDRRR 126
                 56666677777888999*******************..99999************954 PP

>> CysG_dimeriser  Sirohaem synthase dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   1.7e-05     0.076      16      49 ..      86     119 ..      85     122 .. 0.95
   2 ?   -1.6   1.4      0.49   2.2e+03      15      29 ..     116     127 ..     114     133 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.7e-05
                     HHHH-SSHHHHHHHHHHHT-HHHHHHHHTT-HHH CS
  CysG_dimeriser  16 VkarlpdvaaRRrFWerffdgpvaelvlaGdeee 49 
                     V+arl+dv+ RR  +e  +++++ ++v++G+ e+
      KIR61036.1  86 VQARLTDVDGRRLGFEVTVTDDAGQSVARGRVER 119
                     99****************************9876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.49
                     HHHHH-SSHHHHHHH CS
  CysG_dimeriser  15 rVkarlpdvaaRRrF 29 
                     rV++ l    +RRrF
      KIR61036.1 116 RVERVLV---DRRRF 127
                     5555554...48888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1068.25
//
Query:       KIR61037.1  [L=348]
Description: PA-phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-28   98.5  19.8    3.6e-28   98.5  19.8    2.1  2  PAP2_3          PAP2 superfamily
    3.4e-09   36.6   5.6    3.4e-09   36.6   5.6    3.4  4  PAP2            PAP2 superfamily
    4.3e-06   27.2   2.8    4.3e-06   27.2   2.8    2.6  3  PAP2_C          PAP2 superfamily C-terminal
  ------ inclusion threshold ------
      0.066   13.4   5.2       0.17   12.1   1.2    2.6  2  DUF423          Protein of unknown function (DUF423)
        3.7    6.3   4.5        2.1    7.1   0.0    2.1  2  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   5.1      0.65   2.3e+03      14      74 ..      29      88 ..      22     135 .. 0.73
   2 !   98.5  19.8     1e-31   3.6e-28      24     189 ..     136     302 ..     105     303 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.65
      PAP2_3 14 weaalnklllahpalavilalaYaslhfqvtllvlvllf.lrrrerlreflttlllatllgl 74
                + a+ ++++++  ++  +++ aYa  +++++ +++++   ++ r++lr ++ ++ +++ll++
  KIR61037.1 29 MAAWAVAFVAGWLVIGLPTDPAYA--FLWIWAATIAWNSrRPWRSHLRFARDWVPVVLLLAV 88
                556666666666777777777888..344455555555547777888888877777777654 PP

  == domain 2  score: 98.5 bits;  conditional E-value: 1e-31
      PAP2_3  24 ahpalavilalaYaslhfqvtllvlvllflrrrerlreflttlllatllgllvyalfPaagPrlleeagfvdtvaaaslagalrdgasravllrgt... 119
                 +  + +v+++++Y s hf+v+l+ +++l+lr+r+r  +f++   ++++ gl++y+l+Paa+P++++++g+   va  s  g++ +g  +a +l ++   
  KIR61037.1 136 EVRWWDVVASWVYFS-HFVVALAAAAVLWLRDRHRWAAFMRRWGFLCASGLVTYFLYPAAPPWWAAQNGLLTEVARISTRGWKAFGMHGAGNLLNAgqi 233
                 5678999*******7.*************************************************9999999999999999777766666555544111 PP

      PAP2_3 120 ienglaafPSlHvawallvalalwrlrrkrllrvlalllnvlmivatvatgnHYlvDviaGvalalvaia 189
                  +n++aa+PSlH+a+al+v++++ r  r+r +++l+l+++++m+++ v+ g+HY++Dv++G+a++ ++++
  KIR61037.1 234 ASNPVAAMPSLHTAFALFVVVFFLRSTRRR-WWPLLLAYPLAMTFTLVYSGEHYVIDVLVGWAYVGLTFL 302
                 5688999***************99999999.99*******************************999886 PP

>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   3.4     0.088   3.2e+02      62     100 ..      29      63 ..      25      68 .. 0.75
   2 ?   -1.0   1.1      0.37   1.3e+03     110     119 ..     139     148 ..      81     170 .. 0.66
   3 ?   -1.1   3.8       0.4   1.4e+03      60      96 ..     151     187 ..     131     194 .. 0.69
   4 !   36.6   5.6   9.6e-13   3.4e-09      37     127 ..     204     304 ..     183     313 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.088
        PAP2  62 afafalalllalllrrkrkkiglvllalillllavlval 100
                 ++a+a+a+++ +l+  +        ++++l+++a+ +a+
  KIR61037.1  29 MAAWAVAFVAGWLVIGLPTD----PAYAFLWIWAATIAW 63 
                 66666666666666666666....688999999999998 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.37
        PAP2 110 lsDvlaGlli 119
                 ++Dv+a++++
  KIR61037.1 139 WWDVVASWVY 148
                 5566666543 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.4
        PAP2  60 Hsafafalalllalllrrkrkkiglvllalillllav 96 
                 H ++a+a+a++l+l  r +++ + +++ +l++  l++
  KIR61037.1 151 HFVVALAAAAVLWLRDRHRWAAFMRRWGFLCASGLVT 187
                 4455556666666655555555556666666666655 PP

  == domain 4  score: 36.6 bits;  conditional E-value: 9.6e-13
        PAP2  37 ldtqvstletses..................keakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlvalsRlylgvHflsDvlaGl 117
                 l t v   +t  +                  +++   +PS H+afa+++++++    rr++++        +ll++ + + ++ +y g H++ Dvl+G+
  KIR61037.1 204 LLTEVARISTRGWkafgmhgagnllnagqiaSNPVAAMPSLHTAFALFVVVFFLRSTRRRWWP--------LLLAYPLAMTFTLVYSGEHYVIDVLVGW 294
                 55554444444445556666666666666656666788*************************........8**************************9 PP

        PAP2 118 liGialaala 127
                 ++ +++++++
  KIR61037.1 295 AYVGLTFLVV 304
                 9988887765 PP

>> PAP2_C  PAP2 superfamily C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       4.5   1.6e+04      32      47 ..      27      42 ..      23      43 .. 0.64
   2 ?    0.1   0.7      0.34   1.2e+03       6      32 ..     147     174 ..     138     191 .. 0.57
   3 !   27.2   2.8   1.2e-09   4.3e-06       8      70 ..     243     302 ..     240     305 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.5
      PAP2_C 32 lkvillllallglfli 47
                + + ++ +a++   l+
  KIR61037.1 27 VAMAAWAVAFVAGWLV 42
                6677777777766655 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.34
      PAP2_C   6 ifSGHtvvltlavlfileyspkkla.il 32 
                 ++ +H vv + a+ +++   ++++a ++
  KIR61037.1 147 VYFSHFVVALAAAAVLWLRDRHRWAaFM 174
                 4556777776666666655555554333 PP

  == domain 3  score: 27.2 bits;  conditional E-value: 1.2e-09
      PAP2_C   8 SGHtvvltlavlfileyspkklailkvillllallglfliiasrkHYtvDVllglyittlvfl 70 
                 S Ht++ +++v+f+l+ ++++++    +ll + l   f +++s +HY +DVl+g+  + l+fl
  KIR61037.1 243 SLHTAFALFVVVFFLRSTRRRWW---PLLLAYPLAMTFTLVYSGEHYVIDVLVGWAYVGLTFL 302
                 77****************99994...45667777888999***************99999985 PP

>> DUF423  Protein of unknown function (DUF423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.055     2e+02      28      70 ..     151     187 ..     128     200 .. 0.67
   2 ?   12.1   1.2   4.7e-05      0.17       3      73 ..     218     289 ..     216     303 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.055
      DUF423  28 qlyhalallavallaskaaasrllklagllflaGivlFSgsly 70 
                 +++ ala  av +l      + ++++a+++   G ++ Sg + 
  KIR61037.1 151 HFVVALAAAAVLWL------RDRHRWAAFMRRWGFLCASGLVT 187
                 45555666555555......46677777777777777776554 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4.7e-05
      DUF423   3 AfgaHglkkkleekalesfetavqYqlyhalallavalla.skaaasrllklagllflaGivlFSgslylla 73 
                 Afg Hg  + l++ +++s  +a+   l  a+al++v +++ s++ +   l la+ l ++ ++++Sg+ y++ 
  KIR61037.1 218 AFGMHGAGNLLNAGQIASNPVAAMPSLHTAFALFVVVFFLrSTRRRWWPLLLAYPLAMTFTLVYSGEHYVID 289
                 9*******999999999999**999999999999999997443444444667888999999********984 PP

>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00059       2.1     104     130 ..      59      85 ..      48     105 .. 0.84
   2 ?   -1.4   2.7      0.22   7.8e+02     356     379 ..     125     146 ..     121     179 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00059
  Fungal_trans_2 104 ieissgdvsdwrvhLeaatsliksrgg 130
                     + i++++++ wr+hL+ a++++   ++
      KIR61037.1  59 ATIAWNSRRPWRSHLRFARDWVPVVLL 85 
                     679*****************9987665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.22
  Fungal_trans_2 356 evWrrrddgeekidWrdvmekkgw 379
                     +vW + ++  ++++W+dv++   w
      KIR61037.1 125 TVWLQDHLYRPEVRWWDVVA--SW 146
                     69****************93..34 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2389.34
//
Query:       KIR61038.1  [L=203]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-15   57.1   0.0    2.1e-15   56.7   0.0    1.2  1  bPH_2     Bacterial PH domain
  ------ inclusion threshold ------
       0.25   11.1   0.2       0.44   10.4   0.2    1.4  1  UVR       UvrB/uvrC motif


Domain annotation for each model (and alignments):
>> bPH_2  Bacterial PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   2.3e-19   2.1e-15       3      80 .]     116     192 ..     114     192 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 2.3e-19
       bPH_2   3 attytitdrrvvvrsGillrktldiplerIqavsleqsllqrrlglgtivietaggsraevelplrsvpdaeelaell 80 
                 a++y+ +++ ++vr+G+l r+ +++p++r q v++++++l+r + l+t++++ta  ++ ++++p+++ ++a++l+++l
  KIR61038.1 116 AWGYAERENDLLVRHGLLVRRLSIVPYSRMQFVDVSAGPLERAFDLATVQLHTAAAAS-DARVPGLRPAEAARLRDRL 192
                 577******************************************************5.9***************975 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   4.9e-05      0.44      22      35 ..     184     197 ..     184     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4.9e-05
         UVR  22 kAAklRDqinalkk 35 
                 +AA+lRD+++al +
  KIR61038.1 184 EAARLRDRLTALGE 197
                 7*********9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1448.99
//
Query:       KIR61039.1  [L=372]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-62  208.9   0.1    4.7e-62  207.7   0.0    1.7  2  AAA_3            ATPase family associated with various cellul
      5e-19   67.9   1.6      5e-19   67.9   1.6    2.5  2  AAA_lid_2        AAA lid domain
      5e-14   52.5   0.0    1.2e-13   51.2   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
     0.0003   20.6   0.1     0.0017   18.1   0.0    2.1  3  Sigma54_activat  Sigma-54 interaction domain
      0.007   16.8   0.0      0.021   15.2   0.0    1.8  1  AAA              ATPase family associated with various cellul
  ------ inclusion threshold ------
       0.12   11.7   0.2       0.93    8.8   0.1    2.0  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
       0.14   11.9   0.1        2.2    8.0   0.1    2.6  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d


Domain annotation for each model (and alignments):
>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.7   0.0   1.8e-65   4.7e-62       1     131 []      68     198 ..      68     198 .. 1.00
   2 ?   -3.5   0.0       3.5   9.1e+03     105     115 ..     256     266 ..     242     267 .. 0.81

  Alignments for each domain:
  == domain 1  score: 207.7 bits;  conditional E-value: 1.8e-65
       AAA_3   1 hvllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanllladeinrappktqsalleameerqvtvegethk 99 
                 h+llegvPG+aktl+v++la++++ +f r+qftpdl+P+di+Gt+++++++++f+++ Gpvf n+lladeinrap+k+qsalle+m erqv+++g+th+
  KIR61039.1  68 HCLLEGVPGVAKTLAVETLARVVGGSFARVQFTPDLVPADIMGTRIYRQSSEKFDVELGPVFVNFLLADEINRAPAKVQSALLEVMSERQVSIGGQTHP 166
                 9************************************************************************************************** PP

       AAA_3 100 lpepflvlatqnPieqeGtyplpeaqldrfll 131
                 +p+pflv+atqnPieqeG+yplpeaq drfl+
  KIR61039.1 167 VPDPFLVMATQNPIEQEGVYPLPEAQRDRFLM 198
                 ******************************98 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.5
       AAA_3 105 lvlatqnPieq 115
                 lvlat+ P e+
  KIR61039.1 256 LVLATRTPAEH 266
                 79999999885 PP

>> AAA_lid_2  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.4      0.15   3.9e+02      37      56 ..     244     263 ..     227     273 .. 0.76
   2 !   67.9   1.6   1.9e-22     5e-19       5      71 ..     271     338 ..     268     340 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.15
   AAA_lid_2  37 yVtpeDvkeaaplVLaHRlr 56 
                 +V    v +a++lVLa R+ 
  KIR61039.1 244 FVHNALVDYAVRLVLATRTP 263
                 677778999*******9985 PP

  == domain 2  score: 67.9 bits;  conditional E-value: 1.9e-22
   AAA_lid_2   5 ahlaielgvsgrRadlallraArAlAalegrdyVtpeDvkeaaplVLaHRlr..repeaegetteeive 71 
                 +++ i++g+s+r a+l l+ra rAlA+l+grdy +p+Dv+++ap +L+HRl+  +++ a+++ ++ +v+
  KIR61039.1 271 VAQLIQYGASPR-ASLGLVRATRALALLRGRDYALPQDVQDIAPDILRHRLVlsYDALADDVPADHVVH 338
                 56789*******.****************************************9999999988888876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   4.8e-17   1.2e-13       1     138 []      68     196 ..      68     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 4.8e-17
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--...........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik..ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllle 97 
                 + lL G pG++K+  +e la++++ ++  vq+t d+ ++d+ g r ++  +++   + +p+         l+ DE++ra+ +v+++Ll +++er++++ 
  KIR61039.1  68 HCLLEGVPGVAKTLAVETLARVVGGSFARVQFTPDLVPADIMGTRIYRqsSEKFDVELGPVF-----VNFLLADEINRAPAKVQSALLEVMSERQVSI- 160
                 579********************************************854445555666666.....689999************************4. PP

                 -SSSEEE---......-EEEEEESS--..-TT-TTHHHHTT- CS
       AAA_5  98 eggelvkaknddllerfrviatanpld.rslnelspalrsRf 138
                  gg+   ++ +     f v+at np +  ++ +l +a r+Rf
  KIR61039.1 161 -GGQTHPVPDP-----FLVMATQNPIEqEGVYPLPEAQRDRF 196
                 .5555555554.....***********99999999**99999 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.49   1.3e+03      14      42 ..      58      86 ..      51     100 .. 0.77
   2 !   18.1   0.0   6.6e-07    0.0017      97     147 ..     133     182 ..     128     186 .. 0.83
   3 ?   -3.8   0.0       3.6   9.3e+03     129     143 ..     248     262 ..     234     266 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.49
                     HHHHHCTSSS-EEEECSTTSSHHHHHHHH CS
  Sigma54_activat 14 qikkvaktdlsvlitGesGtGKellarai 42
                     ++  +   + ++l++G  G+ K+l  +++
       KIR61039.1 58 RMFVALLARGHCLLEGVPGVAKTLAVETL 86
                     555556677899**********9988776 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 6.6e-07
                      EEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHH CS
  Sigma54_activat  97 lfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedlee 147
                      l+ Dei++ p+++Q+ Ll+v+ e++v+  G++++   d  +++at++ +e+
       KIR61039.1 133 LLADEINRAPAKVQSALLEVMSERQVSI-GGQTHPVPDPFLVMATQNPIEQ 182
                      778**********************975.5555555678889999988876 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 3.6
                      SEEE--EEEEEEESS CS
  Sigma54_activat 129 keikvdvriiaatne 143
                      + ++  vr++ at +
       KIR61039.1 248 ALVDYAVRLVLATRT 262
                      456678999999875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.2e-06     0.021       2     130 ..      70     202 ..      69     204 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.2e-06
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEET.TTCSSSSTTHHHHHHHHHHHHHHHTS......TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisg.sellskyvgesekkirelfkeakeka......kpsilfiDEidalaksrsgseseeeervvnqLltel 93 
                 ll G pG+ KTl+++ +a+ +g +f +++  ++l+     +  + +r + ++ ++            l+ DEi +   +           v+++Ll+++
  KIR61039.1  70 LLEGVPGVAKTLAVETLARVVGGSFARVQFtPDLV----PADIMGTRIYRQSSEKFDvelgpvFVNFLLADEINRAPAK-----------VQSALLEVM 153
                 899*******************9999998624555....3333333333333333334443322256677777777433...........69******* PP

                 HHTTTS........SSTEEEEEEESS.....GGGSTHHHHSTTSSEEEET CS
         AAA  94 dgvkkk........eskvivigatnr.....pdkldpallrgRfdrkiei 130
                 ++ + +         ++++v+++ n      +  l++a + +Rf +ki +
  KIR61039.1 154 SERQVSiggqthpvPDPFLVMATQNPieqegVYPLPEAQR-DRFLMKIVV 202
                 9999999999999855566666666554433444666666.777777766 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00036      0.93       5      45 ..      49      89 ..      45      97 .. 0.91
   2 ?    0.5   0.0      0.13   3.4e+02     110     158 ..     133     179 ..     128     187 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00036
  Mg_chelatase  5 vkGqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsl 45
                  ++Gq++  + + +a   + + ll G pG  Kt+  + l+ +
    KIR61039.1 49 IVGQDRMVERMFVALLARGHCLLEGVPGVAKTLAVETLARV 89
                  89*******************************99998876 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.13
  Mg_chelatase 110 LfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNp 158
                   L+ DE+    +kv  +L e + +++v+i  +++ v  p  f ++a+ Np
    KIR61039.1 133 LLADEINRAPAKVQSALLEVMSERQVSIGGQTHPV--PDPFLVMATQNP 179
                   7789**********************998766655..666888888887 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1   0.00086       2.2      33      70 ..      66     104 ..      47     165 .. 0.56
   2 ?   -0.9   0.0      0.46   1.2e+03      96     142 ..     236     283 ..     226     290 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00086
      RuvB_N  33 ldhvllyGpPGlGkttlakiiakelgvkl.kitsgPvle 70 
                   h+ll G PG+ kt   + +a+ +g ++ ++  +P l 
  KIR61039.1  66 RGHCLLEGVPGVAKTLAVETLARVVGGSFaRVQFTPDLV 104
                 469************888888888876652444555554 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.46
      RuvB_N  96 lsraveev.lysamedfrldivigkGpsarsikldlpkftlvgattra 142
                 l+r++++v +++a+ d+++ +v+ + + a+    d++++   ga+ ra
  KIR61039.1 236 LQRKADQVfVHNALVDYAVRLVLATRTPAEHGMPDVAQLIQYGASPRA 283
                 556666552578999999999999988888877788887777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2496.05
//
Query:       KIR61040.1  [L=342]
Description: hypothetical protein TK50_24985 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-18   66.5   0.5      4e-18   65.5   0.5    1.6  1  DUF58     Protein of unknown function DUF58


Domain annotation for each model (and alignments):
>> DUF58  Protein of unknown function DUF58
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.5   2.3e-22     4e-18       2      85 ..      62     145 ..      61     146 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 2.3e-22
       DUF58   2 ldfaglReYvpgDplrrIdWkatARtgelyvrefeaerartvllvldlspemslgstgdekletavsaaaslarqlldegdrvg 85 
                 ++  + ReY+pgD++rr+dW++tARt  ++vr   a r+ +++l++dls++ ++g+ +  k +  v+aaa+la   ++ g+r+g
  KIR61040.1  62 SEAGESREYRPGDDVRRMDWPVTARTTMPHVRRTVADRELETWLAVDLSASLDFGTGRWLKRDVVVAAAAALAHLTVRGGNRIG 145
                 677899****************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2430.61
//
Query:       KIR61041.1  [L=316]
Description: von Willebrand factor A [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-19   69.3   0.0    8.5e-19   68.2   0.0    1.6  1  VWA_2     von Willebrand factor type A domain
    7.8e-18   65.3   0.0    1.1e-17   64.9   0.0    1.1  1  VWA       von Willebrand factor type A domain
    3.2e-07   30.6  11.8    3.2e-07   30.6  11.8    1.9  2  BatA      Aerotolerance regulator N-terminal
    0.00076   19.2   1.7    0.00076   19.2   1.7    2.2  2  DUF4131   Domain of unknown function (DUF4131)
  ------ inclusion threshold ------
       0.01   15.0   1.1       0.65    9.2   0.1    2.2  2  DUF1194   Protein of unknown function (DUF1194)
       0.12   12.3   0.2       0.49   10.3   0.2    2.1  1  VWA_3     von Willebrand factor type A domain
       0.27   10.6   1.0        1.1    8.6   0.0    2.4  3  DUF4191   Domain of unknown function (DUF4191)
        4.2    7.4   5.6        6.9    6.7   1.2    2.8  2  FixQ      Cbb3-type cytochrome oxidase component FixQ
          5    7.4  11.5       0.47   10.8   2.6    2.9  3  YwiC      YwiC-like protein


Domain annotation for each model (and alignments):
>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   4.3e-22   8.5e-19       1     106 [.      89     199 ..      89     200 .. 0.95

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 4.3e-22
       VWA_2   1 lvfvlDtSgSmrngdygptrleaakdaveallkslpgd.rvglvtfsdgpevlipltkdkakilnalrnleakgggtnlaaaLqlarkalkkrr..... 93 
                 +++ +D+S Sm+++d+ p+rleaa++a+++++++lp + ++glv+f++ ++vl+p+tkd++++ +a+++l   + +t +++a+ ++ +a+++ +     
  KIR61041.1  89 VMLAIDVSLSMQADDVAPNRLEAAQEAAKQFVGELPQTyNLGLVSFAKAANVLVPPTKDRDAVTAAIDGLVL-AEATATGEAVFTCLEAIRSVPadgaa 186
                 79*********************************9555********************************6.7****************988888888 PP

       VWA_2  94 kgekrvivlitDg 106
                    +++ivl++Dg
  KIR61041.1 187 GIPPARIVLLSDG 199
                 8899********9 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   5.4e-21   1.1e-17       2     174 ..      89     274 ..      89     275 .. 0.85

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 5.4e-21
                 EEEEEE-STTSCHHHHH.....HHHHHHHHHHHHHTBTTTTEEEEEEEESSSEEEEEETTSHCHHHHHHHHHHTGSGGGGSSC-HHHHHHHHHHHHHHH CS
         VWA   2 ivfvlDgSgsmgeenfe.....kvkefikklveklevgpegtrvglvqfssevktefslndysskeellsalnnlkysgggttntgkalkyaleklfks 95 
                 +++++D+S sm+++++       ++e++k++v++l    ++ ++glv+f++ + + ++ ++++  +++  a++ l +    t+ tg+a+   le + + 
  KIR61041.1  89 VMLAIDVSLSMQADDVApnrleAAQEAAKQFVGELP---QTYNLGLVSFAKAANVLVPPTKDR--DAVTAAIDGL-VLAEATA-TGEAVFTCLEAIRSV 180
                 789********6666666444488888888888888...**********************77..9********7.6666666.888887777777776 PP

                 HGT.SSTTSEEEEEEEESS--CSS.HTHHHHHHHHGCTEEEEEEEE...............SSSHHHHHHHHHSSSSCHHCEEEESSHHHHHHHHH CS
         VWA  96 sag.aRenakkviilltdGksndg.dpkeaaneakeqgikvfavGv...............gnadekelLnkiasepgeghvftvtdfeeleelfe 174
                  a  a    +  i+ll+dG  ++g +++eaa+ a+++++ v ++++                 +d  + L ++a++++ g+++++++ +el+++++
  KIR61041.1 181 PADgAAGIPPARIVLLSDGFRTSGrSVEEAAAAAQAANVPVSTIAFgtddgqvdiggqlqrVPVDRMA-LAELAETTE-GYFYEAASVSELKQVYQ 274
                 666322267899***********88*************************999999999966666666.999999998.*************9987 PP

>> BatA  Aerotolerance regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6  11.8   1.6e-10   3.2e-07       1      77 []       1      76 [.       1      76 [. 0.90
   2 ?   -1.6   0.2       1.8   3.5e+03       9      18 ..     295     304 ..     286     314 .. 0.55

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.6e-10
        BatA  1 MlpFlnPllLlallllplpiillyllkrrpqev...vfsslrlleevekdeealqrlkknllllLrllalallvlalArP 77
                M++Fl+P++Lla l + + ++ ly++++r++++   +f ++ ll+ + ++      ++++++ +  ll+l++l+ alArP
  KIR61041.1  1 MIRFLQPWWLLAVLPALA-LAALYVWRQRRRRAyamRFTNVDLLRTLAPKGLG---WRRHVPAVAFLLCLLVLATALARP 76
                889*****8877774444.6889999999999999******************...9**********************9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.8
        BatA   9 lLlallllpl 18 
                  L++ll+l +
  KIR61041.1 295 GLALLLALCA 304
                 3444444433 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.7   3.8e-07   0.00076       6      70 ..       7      90 ..       4     129 .. 0.68
   2 ?    0.6   0.3      0.19   3.8e+02       8      46 ..     292     307 ..     280     315 .. 0.51

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.8e-07
     DUF4131  6 alvllalllllllllllllrrrprrrv......................llllllllllallgfalrapqpnandlsqllesgqevi 70
                +++lla+l +l+l++l+++r+r+r  +                        ++ ++++l++l ++++a+ ++a d    le + +v+
  KIR61041.1  7 PWWLLAVLPALALAALYVWRQRRR--RayamrftnvdllrtlapkglgwRRHVPAVAFLLCLLVLATALARPAIDTREPLE-RATVM 90
                689999999999999999865333..2236666666666666666666666666666666666666666666655555555.45555 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.19
     DUF4131   8 vllalllllllllllllrrrprrrvllllllllllallg 46 
                 +  +l+lll+l++                       ++ 
  KIR61041.1 292 WYAGLALLLALCA-----------------------GAT 307
                 3333333333333.......................333 PP

>> DUF1194  Protein of unknown function (DUF1194)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1    0.0088        17       5      21 ..      88     104 ..      85     118 .. 0.86
   2 ?    9.2   0.1   0.00033      0.65      90     159 ..     159     231 ..     142     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0088
     DUF1194   5 eLvLavDvSgSvdeeEl 21 
                   +La+DvS S++++++
  KIR61041.1  88 TVMLAIDVSLSMQADDV 104
                 578*********99886 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00033
     DUF1194  90 aaarrtaigeAlefaaallaenpveglrrv....iDvSGDGpnneglepvtaardaaeakgvtingLaietkea 159
                   a+ ta geA+ +  +++++ p +g+  +    i +  DG  ++g ++v++a +aa+a++v +  +a +t++ 
  KIR61041.1 159 VLAEATATGEAVFTCLEAIRSVPADGAAGIpparIVLLSDGFRTSG-RSVEEAAAAAQAANVPVSTIAFGTDDG 231
                 55678******************9998644333355666*******.8888****************9998876 PP

>> VWA_3  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00025      0.49       3     135 ..      89     228 ..      87     261 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00025
       VWA_3   3 vvivvDvsssmsaen......klvkdaLsvalrqLptndkiavllfgtkprplfpgsravsaaelqealqkikelel...slgasnlegaLkealrqp. 91 
                 v +++Dvs sm+a        +++++a + ++ +Lp+   + +++f   +  l p  +  +     ++ ++i+ l l      ++ +   L+++ + p 
  KIR61041.1  89 VMLAIDVSLSMQADDvapnrlEAAQEAAKQFVGELPQTYNLGLVSFAKAANVLVPPTKDRD-----AVTAAIDGLVLaeaTATGEAVFTCLEAIRSVPa 182
                 7788899999888767777888888888888888999999999999998888887765544.....444444444330002344444444444433335 PP

       VWA_3  92 ..akpgevrsvilltDgssaqgeervsdlisrar.ekirfhalglgs 135
                   a    +  ++ll+Dg  ++g  +v+++  +a+ ++++++++++g 
  KIR61041.1 183 dgAAGIPPARIVLLSDGFRTSGR-SVEEAAAAAQaANVPVSTIAFGT 228
                 5577777899********77777.7888887777799********98 PP

>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.85   1.7e+03      53      78 ..       8      33 ..       2      40 .. 0.49
   2 ?   -1.4   0.0      0.59   1.2e+03      59     101 ..      87     129 ..      53     156 .. 0.65
   3 ?    8.6   0.0   0.00055       1.1     143     169 ..     210     236 ..     187     254 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.85
     DUF4191 53 llilgillgllvalivltrraekaay 78
                + +l++l +l +a +   r+ ++ ay
  KIR61041.1  8 WWLLAVLPALALAALYVWRQRRRRAY 33
                33444444444444444444444444 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.59
     DUF4191  59 llgllvalivltrraekaayaqiegqpGaaaavlenlrrgwrv 101
                 ++ +l+  + l+ +a+ +a +++e  + aa++ + +l +++++
  KIR61041.1  87 ATVMLAIDVSLSMQADDVAPNRLEAAQEAAKQFVGELPQTYNL 129
                 4455666677788888888888888888888888888777764 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00055
     DUF4191 143 krikrvvadvpvyeivvGngegqvplk 169
                    +  +a+vpv +i  G+++gqv + 
  KIR61041.1 210 AAAAAQAANVPVSTIAFGTDDGQVDIG 236
                 44455578****************974 PP

>> FixQ  Cbb3-type cytochrome oxidase component FixQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   1.2    0.0035       6.9       9      38 ..       4      33 ..       2      34 .. 0.93
   2 ?    1.3   0.2      0.17   3.3e+02       4      20 ..     288     304 ..     287     313 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0035
        FixQ  9 fadswgllflvllfygvviyafrpgnrkdf 38
                f + w+ll+ +  ++ + +y+ r ++r+ +
  KIR61041.1  4 FLQPWWLLAVLPALALAALYVWRQRRRRAY 33
                7888***********************988 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.17
        FixQ   4 ealrgfadswgllflvl 20 
                 e+ +++a  ++ll+l++
  KIR61041.1 288 EITQWYAGLALLLALCA 304
                 56789998889888876 PP

>> YwiC  YwiC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.6   0.00023      0.47      84     107 ..       8      31 ..       2      38 .. 0.91
   2 ?    0.3   0.6       0.4   7.9e+02      41      75 ..      35      77 ..      31      98 .. 0.56
   3 ?    0.3   0.1      0.41   8.1e+02      57      75 ..     286     304 ..     252     315 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00023
        YwiC  84 wwallflplvavavyeakrkreRs 107
                 ww+l++lp++a+a+++++r+r R+
  KIR61041.1   8 WWLLAVLPALALAALYVWRQRRRR 31 
                 *********************997 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.4
        YwiC 41 affplllllka........rrrarylkplliYgavalllllla 75
                ++f  + ll++        rr   ++++ll+  ++a +l+ +a
  KIR61041.1 35 MRFTNVDLLRTlapkglgwRRHVPAVAFLLCLLVLATALARPA 77
                5555555555554444433444444555555555555544444 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.41
        YwiC  57 ylkplliYgavalllllla 75 
                  ++ +  Y+++alll+l a
  KIR61041.1 286 PREITQWYAGLALLLALCA 304
                 4445555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2420.10
//
Query:       KIR61042.1  [L=72]
Description: hypothetical protein TK50_24995 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 501.62
//
Query:       KIR61043.1  [L=234]
Description: 3-oxoacyl-ACP reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-60  202.4   3.7    1.2e-59  201.7   3.7    1.3  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    1.7e-51  174.5   1.0    3.2e-51  173.6   1.0    1.4  1  adh_short       short chain dehydrogenase
    3.3e-19   69.5   0.5    1.1e-14   54.7   0.0    2.2  2  KR              KR domain
    3.9e-05   23.2   0.1    5.9e-05   22.6   0.1    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.025   13.7   0.1      0.033   13.3   0.1    1.2  1  RmlD_sub_bind   RmlD substrate binding domain
      0.071   12.9   0.1       0.11   12.3   0.1    1.3  1  DFP             DNA / pantothenate metabolism flavoprotein
       0.17   11.7   2.0       0.24   11.3   2.0    1.4  1  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.7   3.7   4.9e-63   1.2e-59       4     233 ..      12     230 ..       8     231 .. 0.95

  Alignments for each domain:
  == domain 1  score: 201.7 bits;  conditional E-value: 4.9e-63
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdra 98 
                   +gIG aiA+a+a++G +v++t ++ +a           ++  + + cDVtd ++v+a++ +v++++g + +lv nagi+++  + ++ +s+e+f r+
    KIR61043.1  12 RGIGLAIAQAFAKQGDRVAITHRSGDA-----------PEGlFgVVCDVTDSASVDAAFTAVEAELGPVEVLVANAGITDD--TLIMRMSEEQFTRV 95 
                   8***********************998...........2222459************************************..************** PP

                   HHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHH CS
  adh_short_C2  99 ldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleele 193
                   ld+nl+++f++a +a + +++++ g+++ +ssv +  + p++  y+a+Ka+l++++r++ +elg ++i+ N+v+pg+i+T+++++++  +e ++e  
    KIR61043.1  96 LDTNLTGAFRCASRASKkMLRARwGRMIFISSVVGLYGGPGQVNYAASKAGLVGVARSITRELGGRNITANVVAPGFIDTDMTAALP--EERRAEYV 190
                   ****************97555556**************************************************************9..89999*** PP

                   HHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 194 araplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   + +p grl+ peeva+++ +Lasd+a y+tG+++ vDgGl
    KIR61043.1 191 KAIPAGRLAAPEEVAAVVTWLASDAAGYVTGAVIPVDGGL 230
                   ***************************************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.6   1.0   1.2e-54   3.2e-51       2     193 ..       4     184 ..       3     186 .. 0.97

  Alignments for each domain:
  == domain 1  score: 173.6 bits;  conditional E-value: 1.2e-54
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 +vlvtG+ +GIG+aia+++ak+G +v+++ rs ++        +     ++ + +Dvtd+++v+a++ +++++lg+++vLv+NAGit ++ + ++see+
  KIR61043.1   4 TVLVTGGNRGIGLAIAQAFAKQGDRVAITHRSGDAP-------E----GLFGVVCDVTDSASVDAAFTAVEAELGPVEVLVANAGITDDTLIMRMSEEQ 91 
                 89******************************8866.......2....3899*********************************************** PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTH CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelrek 193
                 + rv+++Nltg+f ++  + ++ml++++Gr +++sSv+g+++ +g++ Y+AsKa+++g +rs+ +el  ++i+ n+vaPG++dTdm+++l e+
  KIR61043.1  92 FTRVLDTNLTGAFRCASRASKKMLRARWGRMIFISSVVGLYGGPGQVNYAASKAGLVGVARSITRELGGRNITANVVAPGFIDTDMTAALPEE 184
                 ***************************************************************************************998776 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   2.7e-05      0.07       2      34 ..       4      35 ..       3      41 .. 0.83
   2 !   54.7   0.0   4.3e-18   1.1e-14      59     161 ..      46     152 ..      43     169 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
                EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS CS
          KR  2 tylitGGlGgLGlelarwlaekgarhlvllsRs 34
                t+l+tGG  g+Gl++a+  a++g r ++++ Rs
  KIR61043.1  4 TVLVTGGNRGIGLAIAQAFAKQGDR-VAITHRS 35
                78*********************76.5555555 PP

  == domain 2  score: 54.7 bits;  conditional E-value: 4.3e-18
                 ---TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHH CS
          KR  59 aaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaN 153
                  +Dv+d+++v a++++++ae +p++  +  Ag+++d+l+++m++e++++vl   ++Ga       ++     +   ++++SS+ gl+g +gq+nYaa  
  KIR61043.1  46 VCDVTDSASVDAAFTAVEAELGPVEVLVANAGITDDTLIMRMSEEQFTRVLDTNLTGAFRCASRASKkmlrARWGRMIFISSVVGLYGGPGQVNYAASK 144
                 7*********************************************************998877777354455567*********************98 PP

                 HHHHHHHH CS
          KR 154 aflDalae 161
                 a l ++a+
  KIR61043.1 145 AGLVGVAR 152
                 87766665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   2.3e-08   5.9e-05       1     122 [.       5     135 ..       5     158 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.3e-08
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHH....T-SEEEE-.-S---....HHHHHHSHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkee....qpdavihl.Aavgg....vaassedpadfiek 90 
                 +lVtG++  iG a+++a++++g +v    r   + +    e l  v +d+td+++++++f  +    +p +v+ + A++ +     + s e+ ++++++
  KIR61043.1   5 VLVTGGNRGIGLAIAQAFAKQGDRVAITHRS-GDAP----EGLFGVVCDVTDSASVDAAFTAVeaelGPVEVLVAnAGITDdtliMRMSEEQFTRVLDT 98 
                 79********************776665555.3333....345889********99998876511125556666634455422222457778889999* PP

                 HTHHHHHHHHHHHHHTCT....EEEEEEE.GGGGTSC CS
   Epimerase  91 nlqgtlnlleaarkagvk....rllflsS.sevYGkd 122
                 nl g+ + ++ a+k+ ++    r++f+sS + +YG +
  KIR61043.1  99 NLTGAFRCASRASKKMLRarwgRMIFISSvVGLYGGP 135
                 *******999999886666788*******77888855 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.3e-05     0.033       2      53 ..       4      65 ..       3     113 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
                   EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT..........T--TTSHHHHHHHHHHH--S CS
  RmlD_sub_bind  2 kilvtGanGqlGseLakqlaeeglevlaltre..........eldltdaeavaellkeakpd 53
                   ++lvtG+n  +G ++a+++a++g  v  ++r+           +d+td+++v++++ +++ +
     KIR61043.1  4 TVLVTGGNRGIGLAIAQAFAKQGDRVAITHRSgdapeglfgvVCDVTDSASVDAAFTAVEAE 65
                   69*********************666666666999999999999******999999877654 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   4.3e-05      0.11      31      95 ..      14      81 ..       8     103 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.3e-05
                HHHHHHHHHHHTT-EEEEEE-S-SS---T.T-..EEEE--SHHHHHHHHHHHHTT-SEEEE---S--E CS
         DFP 31 mGyalAeaaaarGaeVtlvsgpvsletpe.gv..evvkvesaeemleaveealkeadivimaAAvaDy 95
                 G+a+A+a+a++G +V + + + + ++   gv  +v++  s++   +ave++l   +++++ A + D 
  KIR61043.1 14 IGLAIAQAFAKQGDRVAITHRSGDAPEGLfGVvcDVTDSASVDAAFTAVEAELGPVEVLVANAGITDD 81
                599***************99986655432232236667777777888899999999*******99995 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.0   9.3e-05      0.24       1     102 [.       9     132 ..       9     214 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.3e-05
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHT.......T-SEEEES---TCC......HHHH..... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealk.......gadaVvsalggggk......deeg..... 77 
                     G++ ++G ++++  +++g  +v a++ ++ +++     egl  v+ dvtd++++ +a++        +++ v+++g +++               
      KIR61043.1   9 GGNRGIGLAIAQAFAKQG-DRV-AITHRSGDAP-----EGLFGVVCDVTDSASVDAAFTaveaelgPVEVLVANAGITDDtlimrmS--Eeqftr 94 
                     999********9999995.676.5555555555.....58899***************94444443334445555444444555441..044566 PP

                     ............HHHHHHHHHHCT--EEEEEEE.TTTT CS
  NAD_binding_10  78 ............aknivdaakeagvkRfvlvsa.igvg 102
                                 a ++ + + +a   R++++s+ +g +
      KIR61043.1  95 vldtnltgafrcASRASKKMLRARWGRMIFISSvVGLY 132
                     67777788888888888888888888888888833555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1633.48
//
Query:       KIR61044.1  [L=256]
Description: enoyl-ACP reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-69  231.5   0.0      1e-68  231.4   0.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    4.3e-14   52.4   0.0    5.8e-14   52.0   0.0    1.1  1  adh_short     short chain dehydrogenase
  ------ inclusion threshold ------
      0.085   12.8   0.0       0.15   12.0   0.0    1.5  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.4   0.0   1.8e-72     1e-68       2     234 .]      15     251 ..      14     251 .. 0.97

  Alignments for each domain:
  == domain 1  score: 231.4 bits;  conditional E-value: 1.8e-72
                   TT..TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG..CSS-GGGH-H CS
  adh_short_C2   2 aa..sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae..vlecDVtdeeqvealveevvekfgklDilvnnagiapk..lkgpfletsr 92 
                   +    +I++ +Ak+++e+Ga+vvlt +++ +   ve++a++l++   v+e+DVt++e+++ l+++v+e++++lD++v+++g+ap+  l g fl++++
    KIR61044.1  15 VItdASIAFSVAKLAQENGAQVVLTGFGRLS--LVERIARRLPEPapVIELDVTNTEHLAGLADKVREHVDGLDGVVHSIGFAPQscLGGGFLDAPW 109
                   55568************************98..8********987446************************************************* PP

                   HHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHH CS
  adh_short_C2  93 eefdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdell 189
                   e++++al+v++ys+ +la aalplm +gg++v l++  a++++p y+++g+aKa+le+ +rylA +lg++giR N v++gp++T+aa++i+gf +++
    KIR61044.1 110 EDVATALHVSTYSYKSLAMAALPLMSPGGAVVGLTFD-ATKAWPVYDWMGVAKAGLESASRYLALHLGKQGIRSNLVAAGPLRTMAAKSIPGFVQFE 205
                   *************************************.88********************************************************* PP

                   HHHHHHSTTSS.-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 190 eelearaplgr.lgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   +++ araplg+ l+++   a+a+l L+sd+  ++tG++++vDgG++
    KIR61044.1 206 DAWSARAPLGWdLTDQAPAARACLALLSDWFPATTGEIVHVDGGYH 251
                   ***********555999****************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   9.7e-18   5.8e-14       4     189 ..      11     197 ..       8     200 .. 0.87

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 9.7e-18
                 EEEST..TSHHHHHHHHHHHHTT-EEEEEESCH.HHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S....S--SSGGG CS
   adh_short   4 lvtGa..ssGIGraiakelakeGakvvvvdrse.ekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi....tgsgpfse 95 
                 lvtG   ++ I   +ak   ++Ga+vv+++    + +e++a  l e    a +i++Dvt+ e +  l +k+++++++ld +v+  G        g f +
  KIR61044.1  11 LVTGVitDASIAFSVAKLAQENGAQVVLTGFGRlSLVERIARRLPE---PAPVIELDVTNTEHLAGLADKVREHVDGLDGVVHSIGFapqsCLGGGFLD 106
                 6777522568******************765540555566666665...6*************************************876544567888 PP

                 CSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  96 lseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                    e++   ++v   ++ +l+ a+lp m    +G++v  +  a+ ++++++   + +Ka++++ +r la  l ++gir n va G+++T  ak+
  KIR61044.1 107 APWEDVATALHVSTYSYKSLAMAALPLMS--PGGAVVGLTFDAT-KAWPVYDWMGVAKAGLESASRYLALHLGKQGIRSNLVAAGPLRTMAAKS 197
                 888888888******************98..9******998887.899999999***********************************88876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.4e-05      0.15      56      93 ..      59      96 ..      10     115 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.4e-05
                EE----TT-HHHHHHHHHHHHHHSS---EEEE------ CS
          KR 56 evvaaDvsdkdavealleeikaeeppikGvihaAgvlr 93
                 v+++Dv++ ++++ l ++++++ + + Gv+h+ g++ 
  KIR61044.1 59 PVIELDVTNTEHLAGLADKVREHVDGLDGVVHSIGFAP 96
                5899*****************999********988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1751.73
//
Query:       KIR61045.1  [L=342]
Description: ferrochelatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-97  324.9   0.0    5.2e-97  324.7   0.0    1.0  1  Ferrochelatase  Ferrochelatase


Domain annotation for each model (and alignments):
>> Ferrochelatase  Ferrochelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.7   0.0  2.9e-101   5.2e-97       2     316 ..       4     310 ..       3     311 .. 0.96

  Alignments for each domain:
  == domain 1  score: 324.7 bits;  conditional E-value: 2.9e-101
                     EEEEEEE----SSCCCHHHHHHHHCT-TTTS-S-TTTHHHHHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHHHHHH---EEEEEEES CS
  Ferrochelatase   2 tavLLlnlGgPekpedvrpflenllsdrrvielplllqkllaklilkerlekvaekYekigggSPlneitrkqaealekelaergidvkvylamr 96 
                     +a++L+++GgPe pedv pfl+n++++r+v++               erl++vae+Y ++gg SP+n++ r++ +a+++++a++g+d++vy+++r
      KIR61045.1   4 DALVLVSFGGPERPEDVLPFLQNVTRGRGVPP---------------ERLAEVAEHYLHFGGVSPINQQCRDLLAAIRADFAAHGVDLPVYWGNR 83 
                     79******************************...............************************************************ PP

                     SSSSBHHHHHHHHHCTT-SEEEEEES-SS--TTTHHHHHHHHHHHHHH.TT-SSEEEEE---TT-HHHHHHHHHHHHHHHTTS-.HC...C-EEE CS
  Ferrochelatase  97 ywePsiedaleelkadgvervvvlplyPqysasttgssleeleralkk.kreapevrvirqfydhpgyiealaesikealeelp.eek..kakll 187
                     +w+P+++d+++++++dgv+r+++++++++ ++s++++++e++++a+++ + +ap ++++rqf+dhpg++e +a+++++al +l+ + k   ++l+
      KIR61045.1  84 NWDPMLADTVARMRDDGVTRALAFVTSAYGGYSSCRQYQEDIAAARAAvGPDAPVIEKLRQFWDHPGFVEPHADAVRAALGQLDpA-KraTTRLV 177
                     **********************************************998999******************************9963.3368**** PP

                     EEEE--BHHHHT.TT-S....HHHHHHHHHHHHHHHTTT-S-EEEEEE---SS..S-BSSSBHHHHHHHHCCC.-S-EEEE-TT-SS--HHHHII CS
  Ferrochelatase 188 fsaHglPeravkkkgdp....YqqqveetarlvaealglkeevelayqSrvGp..eeWlePdtddtleelaekgvkaivvvpigFvsDhlEtlee 276
                     f+aH++P++a++++g p    Y++q+ etarlv +++  +  ++l++qSr+Gp  ++WlePd++d+l++lae+g++ +vv pigFvsDhlE++++
      KIR61045.1 178 FTAHSIPTSAAANAG-PhggrYEAQLAETARLVHASAAPDLPYDLVWQSRSGPphVPWLEPDVNDHLAALAEAGTTGVVVSPIGFVSDHLEVVWD 271
                     ***********9999.44677************988843336***************************************************** PP

                     IIIIIITTSTT..CCCEEE----TT-HHHHHHHHHHHHHH CS
  Ferrochelatase 277 ldiearelaeeaggekfvrvptlndspafiealadlveee 316
                     ld+ea e+a+++g+ +f+r+ t++++p+f++++++lv+e+
      KIR61045.1 272 LDTEALETAKRLGL-EFARAGTPGTDPRFVAMVRELVAER 310
                     **************.**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2223.33
//
Query:       KIR61046.1  [L=259]
Description: HAD family hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-27   95.8   0.0    3.1e-27   94.6   0.0    1.6  1  Hydrolase_6      Haloacid dehalogenase-like hydrolase
    1.7e-22   79.2   0.0      5e-22   77.8   0.0    1.8  1  Hydrolase_like   HAD-hyrolase-like
    7.2e-08   32.7   0.0    4.4e-06   26.9   0.0    2.2  2  HAD_2            Haloacid dehalogenase-like hydrolase
    3.6e-07   30.7   0.0    3.8e-05   24.1   0.0    2.5  1  Hydrolase        haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.21   11.2   0.0    1.2  1  PGP_phosphatase  Mitochondrial PGP phosphatase


Domain annotation for each model (and alignments):
>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   8.6e-31   3.1e-27       1     100 [.      10     109 ..      10     110 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 8.6e-31
                  EEEESTTTSEETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHHHHTT----GGGEEEHHHHHHHHHHHHSXXXEEEEESXHHHHHHHHHT CS
  Hydrolase_6   1 flfDidGvLwrgdkaipgaaealnalraagkpvvllTNnsskseeeyakkleklgvditeeqvvtsataaaeylkkrkadkkvlvigeeglreelkea 98 
                  +l+D+dGvL+++++++pga+e++n lr++gkp+++lTNns  ++++++++l+++g+++ e  ++t+a a+a++l++++++++ +vige gl   l+++
   KIR61046.1  10 WLTDMDGVLVHEGQPVPGAPEFINKLRSSGKPFLILTNNSIYTPRDLQARLTRMGFEVPEHALWTAALATAQFLADQRPGGTAYVIGEAGLTTALHAV 107
                  689**********************************************************************************************9 PP

                  TX CS
  Hydrolase_6  99 gf 100
                  g+
   KIR61046.1 108 GY 109
                  96 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   1.4e-25     5e-22       2      75 .]     182     255 ..     181     255 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 1.4e-25
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEES- CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddlaea 75 
                     +gKP+p+m+++al+ +++++e + miGDr++tD++++ +aG++++LVltG+++++++e+ +++p  ++ ++a++
      KIR61046.1 182 VGKPNPMMMRSALNTINAHSESTAMIGDRMDTDVLCGLEAGLETILVLTGISTRTEAERYPYRPSRIVGSVADL 255
                     49******************************************************************999985 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.017        62      77     105 ..      21      49 ..       5      67 .. 0.78
   2 !   26.9   0.0   1.2e-09   4.4e-06     121     178 .]     170     228 ..     163     228 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.017
       HAD_2  77 evkpydgvkelLeeLkeagyklgivTsks 105
                 e +p++g+ e++++L++ g    i T++s
  KIR61046.1  21 EGQPVPGAPEFINKLRSSGKPFLILTNNS 49 
                 56899*********************995 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 1.2e-09
       HAD_2 121 yFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsp.tDieaakkagikviav 178
                 ++++  + e  +  KP+p +++ al+  ++++e++ ++GD   tD+ ++ +ag+++i v
  KIR61046.1 170 MISKATGVEPYFVGKPNPMMMRSALNTINAHSESTAMIGDRMdTDVLCGLEAGLETILV 228
                 66778888999999******************************************986 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.1e-08   3.8e-05       7     210 .]      13     222 ..      11     222 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.1e-08
                 ESBTTTBCHH...HHHHHHHHHH...CHHHHHHHHHH.....HHCHHHHHHHHHHHHH.....HHHH...HHHHHETTTE.....HHHHTHHHHHHHHH CS
                 xxxxxxxxxx...xxxxxxxxxx...xxxxxxxxxxx.....xxxxxxxxxxxxxxxx.....xxxx...xxxxxxxxxx.....xxxxxxxxxxxxxx RF
   Hydrolase   7 DkdGTLttge...psvedvivsa...alalaaaletg.....sehpigkalvaaakar.....sgal...tgfatfigrg.....ayaigkpewltald 81 
                 D+dG+L++     p   ++i+++    ++             +++ ++++l++   ++     + a    ++f +          ay ig+  ++tal 
  KIR61046.1  13 DMDGVLVHEGqpvPGAPEFINKLrssGKPFLIL---TnnsiyTPRDLQARLTRMGFEVpehalWTAAlatAQFLAD---QrpggtAYVIGEAGLTTAL- 104
                 9******55558899999999994433333333...3555889999999998888777766653333122333332...245688*************. PP

                 CHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHH.HHHHH.TT..GGGESEEEEHHCES...STT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.xx..xxxxxxxxxxxxxx...xxx RF
   Hydrolase  82 ippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetae.raanq.lG..ddyfdaviasdiet...vak 173
                               ++   +l +   + v+  +   + ++ + +av+ ++  g   +++t+ + + +  + a   +G  +    ++ a+ + +   v+k
  KIR61046.1 105 --------------HAVGYVLTDFAPDYVVLGETRTYSFEAITKAVRLIN-DGA-RFICTNPDVTGPSvEGALPaAGsvAA--MISKATGV-EpyfVGK 184
                 ..............666666666667777777777778888889999988.688.99999999966555666665993222..22222223.1477*** PP

                 TSHHHHHHHHHHHTSTGGGEEEEESSHH.HHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
   Hydrolase 174 pspegkvaaireLqgkpeevamVGDgvn.DaaalaaAg 210
                 p+p +++ a++ +++  e +am+GD++  D+  + +Ag
  KIR61046.1 185 PNPMMMRSALNTINAHSESTAMIGDRMDtDVLCGLEAG 222
                 **************************999998777776 PP

>> PGP_phosphatase  Mitochondrial PGP phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.7e-05      0.21     100     165 ..     170     230 ..     162     233 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.7e-05
  PGP_phosphatase 100 alekktgipVlrhkekKPgcaeevleyfkerkvveeadeiavvgDRllTdvllanmmGslgvwlrd 165
                      +++k+tg++ +   +  P+  ++ l+ ++++     ++  a++gDR+ Tdvl + + G  ++++  
       KIR61046.1 170 MISKATGVEPYFVGKPNPMMMRSALNTINAH-----SESTAMIGDRMDTDVLCGLEAGLETILVLT 230
                      5555666665555555666666666666555.....7889*************9999966666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1759.10
//
Query:       KIR61047.1  [L=264]
Description: hypothetical protein TK50_25020 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1744.98
//
Query:       KIR61048.1  [L=271]
Description: hypothetical protein TK50_25025 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.2e-123  410.8   0.9   2.4e-123  410.7   0.9    1.0  1  DUF3097   Protein of unknown function (DUF3097)


Domain annotation for each model (and alignments):
>> DUF3097  Protein of unknown function (DUF3097)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.7   0.9  1.4e-127  2.4e-123       1     271 []       4     268 ..       4     268 .. 0.98

  Alignments for each domain:
  == domain 1  score: 410.7 bits;  conditional E-value: 1.4e-127
     DUF3097   1 rygsdvlaeearkkrkkvseveaelglvvedaasgfvGavvrvekeaekevveledrkgrrrlfplgpagflleGkpvtlvrpkaaaaa.apkrtasGs 98 
                 ryg+dvla+++r +r+ v+ev+ae +lvveda+sgf+Gavv++e++    +v+ledr+grrr+fpl pa+fll+Gkpvtl+rp+++    a++rtasGs
  KIR61048.1   4 RYGEDVLAGDWR-RRRVVPEVDAEADLVVEDADSGFCGAVVGFESG----AVVLEDRHGRRRNFPLLPAAFLLDGKPVTLRRPARSPVPaARRRTASGS 97 
                 7********987.566799***************************....9*********************************998764679****** PP

     DUF3097  99 vaveeararvarasriyveGkhDaelvekvWGdDLrveGvvvelleGvDdlaeivaefepgpgrrlGvlvDhLvegskesriaeevakeehvlvvGhpy 197
                 +av+++ra+va+asri+veG+hDa+lve++WGdDLr+eGvvve+l+G+Ddl+++v++f pgp rrlGvlvDhLv+gskesri+++v+ ++hvlv+Ghpy
  KIR61048.1  98 IAVAGVRAQVAKASRIWVEGVHDAALVERIWGDDLRIEGVVVEPLDGIDDLDARVRDFGPGPTRRLGVLVDHLVPGSKESRIVAQVT-SAHVLVTGHPY 195
                 ***************************************************************************************.9********** PP

     DUF3097 198 vDvWqavkpeavglkaWPevprgedwkeGvlaalGwpadvaeawkrilakvksyrdlepellgaveeliDfvte 271
                 vDvWqavkp+a+g++aWP vprg++wkeGv+aalG++  +a++w++il++v+s++d+e+ l++a+e+liDfvte
  KIR61048.1 196 VDVWQAVKPAALGIAAWPVVPRGRPWKEGVCAALGVA-APADMWRHILSRVDSFADVETPLINAMERLIDFVTE 268
                 ************************************9.9*********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2126.69
//
Query:       KIR61049.1  [L=439]
Description: beta-lactamase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-54  186.0  11.2    1.1e-54  186.0  11.2    1.4  2  Beta-lactamase  Beta-lactamase
     0.0084   15.6   0.0      0.013   14.9   0.0    1.2  1  Peptidase_S11   D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.0  11.2   1.2e-58   1.1e-54       2     313 ..      12     314 ..       9     329 .. 0.86
   2 ?   -3.8   0.1      0.63   5.6e+03     185     232 ..     381     430 ..     378     434 .. 0.66

  Alignments for each domain:
  == domain 1  score: 186.0 bits;  conditional E-value: 1.2e-58
                     HHHHHHHHHHTTESEEEEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTSTTCTTGGGTTEBH CS
  Beta-lactamase   2 drlvrelmaqggipGvavavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylPefagpgkgkiTl 96 
                     d+ v++++ +g++p+++++vvrdg++ + +++G          +ad  +r++S+tKt+ta++++q+ ++G+l Lddp++++l   +g g g++Tl
      KIR61049.1  12 DARVARAQSEGRAPSLVLGVVRDGELTHVAAAG-----EHPRPDADRQYRLGSITKTMTAVLIMQQRDAGALALDDPLERHL---PGTGVGQLTL 98 
                     5556666667*****************766666.....4558999*************************************...6677788*** PP

                     HHHHTTHSSCSSSSTSTTCTSHHHTH...HHHHHHHHHSBSSSSTTSCEE-SHHHHHHHHHHHHHHHTSHHHHHHHHHTTTTTTSTTEESSTTGG CS
  Beta-lactamase  97 rdLltHtsGlpdlfasdlleeaaada...aellralatlppkyapGtkwgYsntgygllgellekvtgrsleqllreeilrpLgmkdtelgppes 188
                     r+Ll H sGl ++  +  ++++  d    a +l+ +   + +y+p   + Ysn++ygllg +le+vtg+++++llr ++l+pLgm+ t++ p e+
      KIR61049.1  99 RQLLGHASGLQRE--PAGPWWERVDVgdlAAVLAGVDGRKIAYPPHRVYHYSNLAYGLLGGALEAVTGTPWRDLLRARLLEPLGMTRTTYDPVEP 191
                     **********888..4444444444556999999999********************************************************** PP

                     GGGGBEEEEEEETCEEECSCETTHHHHCTTTBEEEEHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECCHTEE CS
  Beta-lactamase 189 gdprdaagytgngpearappanlpaeaegagglistardlarflglalegglllsaetlaqltaklssgttrpagiraglglGwvladktgapgt 283
                      ++ +   +  ++++ r++p+ +  ++++ag l+st++dl+r++ +++++ ++l + +  +   ++++  + p g + g+glG+ l+  +  +  
      KIR61049.1 192 FARGYVVHP--WHDTLREEPRTDTGAMAPAGQLWSTVTDLGRWAAFLADPDSALLHPDTLTEMCATVTMSD-PQGWTSGHGLGLELYRVGE-RVH 282
                     *88888888..88999999999999999****************665555555555555555555555555.7777888899999999999.8** PP

                     EEEEE..STEEEEEEEECGGTEEEEEEESBCS CS
  Beta-lactamase 284 fghtG..ggygtyvfvdpeanlvvavltnrdp 313
                     +gh+G  +gy ++++v + a+ +v+ ++n+ +
      KIR61049.1 283 VGHGGsmPGYVAALAVHRPARTAVVGFANSYG 314
                     *****************************876 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.63
                     TTGGGGGGBEEEEEEETCEEECSCETTHHHHC..TTTBEEEEHHHHHHHH CS
  Beta-lactamase 185 ppesgdprdaagytgngpearappanlpaeae..gagglistardlarfl 232
                     +p++g+p ++ +++g+++++ ++  +++   +   +  +++ a d+a fl
      KIR61049.1 381 SPPAGEPVLRFTPEGPDRWRGRSGEQDGELLTvvRDDAGRAVALDVATFL 430
                     67777777777777777777777776666666665555677777777776 PP

>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.5e-06     0.013      31      65 ..      50      84 ..      48      87 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.5e-06
                   STTS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEE CS
  Peptidase_S11 31 nadevveiASltKlmTaylvlealkkgklkeddkv 65
                   +ad + +  S+tK mTa+l++++ ++g l +dd++
     KIR61049.1 50 DADRQYRLGSITKTMTAVLIMQQRDAGALALDDPL 84
                   7899999**********************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3398.31
//
Query:       KIR61050.1  [L=156]
Description: activity regulator of membrane protease YbbK [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-18   65.4   0.8    4.4e-18   65.4   0.8    1.6  2  NfeD             NfeD-like C-terminal, partner-binding


Domain annotation for each model (and alignments):
>> NfeD  NfeD-like C-terminal, partner-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.8      0.47   8.4e+03      10      10 ..      18      18 ..       5      41 .. 0.58
   2 !   65.4   0.8   2.4e-22   4.4e-18       1      83 [.      51     141 ..      51     141 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.47
                X CS
        NfeD 10 l 10
                +
  KIR61050.1 18 I 18
                1 PP

  == domain 2  score: 65.4 bits;  conditional E-value: 2.4e-22
                 XXXXXXXXXXXXXXXXS---SSS--S....S---GGTTSEEEEEE-B..S-EEEEETTEEEEEE-.SS...B-TT-EEEEEEE-SSSEEEE CS
        NfeD   1 ifavvsvlllvllrplllkklkkkek...ktnaealiGkegvvledi..gtGrvkvdGeeWsarsege...iekgerVrVveveGltliVe 83 
                 +favvs+l++++ rp ++++ +++++   + +  a+ G ++ vle++  ++G vk+dGe Wsars +    +++g rVrV++v+G+t+ V+
  KIR61050.1  51 VFAVVSALTVAVARPAIRRHSRSTSDgaePIGLAAIEGSTALVLERVdaEQGLVKIDGELWSARSYDAtqsFDPGRRVRVIKVQGATALVW 141
                 79*****************9976665544344448************8548**************544467*****************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1035  (0.0577277); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 1321.96
//
Query:       KIR61051.1  [L=368]
Description: stomatin/prohibitin-family membrane protease subunit YbbK [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-33  114.2   1.2    6.6e-33  114.2   1.2    2.8  3  Band_7    SPFH domain / Band 7 family
  ------ inclusion threshold ------
      0.023   14.4   0.0      0.036   13.8   0.0    1.3  1  Band_7_1  SPFH domain-Band 7 family


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   1.2   7.3e-37   6.6e-33       2     177 ..      25     195 ..      24     196 .. 0.97
   2 ?   -1.3   1.1      0.22   1.9e+03     159     178 .]     206     229 ..     198     229 .. 0.71
   3 ?   -3.5   8.0         1   9.2e+03     150     176 ..     309     337 ..     301     338 .. 0.70

  Alignments for each domain:
  == domain 1  score: 114.2 bits;  conditional E-value: 7.3e-37
      Band_7   2 iieegevgvvvrfGklsrvlepGlhfilPfgrsvt.vvsvrvqtldvsvsltvptkDglpvtidvtviyrvpddapklvaaveresanldnlirrvles 99 
                 i++++   vv+r G+++r+l+pGl + +Pf+++v  +v++r q+++++  ++v+t+D+l+v id++++++v  d  ++ +++     n  + i+++++ 
  KIR61051.1  25 IVPQQRQDVVERLGRYKRTLNPGLNLLVPFIDAVRtKVDMREQVVSFPP-QPVITSDNLVVSIDTVLYFKV-VDSVRATYEI----SNFLQAIEQLTVT 117
                 678888889*************************99*************.*********************.9999999999....************* PP

      Band_7 100 alrevisemtleellsnreelaeelknelneqlrkyGvevldvritdidpppevaqalaakqaaeaeaqaeiaraeae 177
                 +lr+vi++++le  l +ree++  l   l e   ++G+ v++v i++i+ppp +++++++ ++ae++++a+i +ae++
  KIR61051.1 118 TLRNVIGSLDLERALTSREEINRHLSGVLDETTGRWGIKVTRVEIKAIEPPPSIRDSMEKQMRAERDRRAAILNAEGH 195
                 ***************************************************************************986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.22
      Band_7 159 akqaaeaea....qaeiaraeaea 178
                 +kqaa  +a    qa+i +ae++a
  KIR61051.1 206 EKQAAVLRAdgdrQARILQAEGQA 229
                 4555555555555*******9986 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1
      Band_7 150 ppevaqalaakqaaeaea..qaeiaraea 176
                 + e a+a +a++aa +++  ++++a+a+a
  KIR61051.1 309 EREAAEAAQAAAAAAQQIhdEVRVAEAQA 337
                 66788888888888888845555555554 PP

>> Band_7_1  SPFH domain-Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     4e-06     0.036     136     209 ..     110     181 ..      84     183 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4e-06
    Band_7_1 136 qlkslivtrlsdvlaeskipvldla...akseelaeklkealkeelaeyGlelekleienislpeevekaldkrasm 209
                  + +l vt+l +v     i+ ldl+   +  ee+ ++l+ +l+e+  + G++++++ei+ i+ p++++  ++k+ ++
  KIR61051.1 110 AIEQLTVTTLRNV-----IGSLDLEralTSREEINRHLSGVLDETTGRWGIKVTRVEIKAIEPPPSIRDSMEKQMRA 181
                 3333344444444.....444444421156789***************************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1011  (0.0563891); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2552.23
//
Query:       KIR61052.1  [L=563]
Description: alpha-galactosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-54  183.5   0.7    7.6e-54  182.8   0.7    1.3  1  Melibiase_2      Alpha galactosidase A
    1.1e-29  103.3  10.3    1.9e-29  102.5  10.3    1.4  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    1.5e-24   86.5  26.0    9.8e-12   45.4   4.5    3.8  3  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    1.8e-13   50.3   0.1    4.6e-13   49.0   0.1    1.7  1  Melibiase_C      Alpha galactosidase C-terminal beta sandwich
    1.7e-05   24.0   0.1      3e-05   23.2   0.1    1.3  1  Melibiase        Melibiase
     0.0014   18.0   0.0     0.0068   15.7   0.0    1.9  2  Glyco_hydro_97   Glycoside hydrolase 97
  ------ inclusion threshold ------
      0.066   11.0   0.6        0.1   10.4   0.6    1.2  1  Raffinose_syn    Raffinose synthase or seed imbibition protei
       0.13   12.8   1.8        7.5    7.2   0.4    2.5  2  MucBP_2          Mucin binding domain
        1.2    9.5   4.7         22    5.4   0.1    3.1  3  ET               ET module


Domain annotation for each model (and alignments):
>> Melibiase_2  Alpha galactosidase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.8   0.7   3.8e-57   7.6e-54       2     284 .]      55     337 ..      54     337 .. 0.86

  Alignments for each domain:
  == domain 1  score: 182.8 bits;  conditional E-value: 3.8e-57
                  --EEEESHHHHTT---TTTSTTTSSSHHHHHHHHHHHHHTTHHHHT--EEE--SS-B-SS--TTS---B-TTTSTTHHHHHHHHHHHTT-EEEEEEES CS
  Melibiase_2   2 ppmgwlawerfrcnvdceedpenciseklfmeladvlaedgykdlgyeyviiddcwlakerdkegrlqadpkrfpsgikkladyvhskglklgiyadl 99 
                  ppmgw +w+ f  ++d      n     ++++  d l++ g kd+gyeyv+id+ w + +rd+ g+++ d++ +p g+k++ady+hskglk giy+d 
   KIR61052.1  55 PPMGWASWNTFAAKIDY-----N-----VIKAQVDSLVSSGLKDAGYEYVNIDEGWWQGTRDAAGNITVDTTEWPGGMKAIADYIHSKGLKAGIYTDA 142
                  9************9995.....4.....456668**************************************************************** PP

                  SSB-TTSS........B..--TTTHHHHHHHHHHHT--EEEEE-TSSSHHHH..HHHHHHHH....HHHHHTTS--EEE.E-HHHHH.TTTS---HHH CS
  Melibiase_2 100 gtktcagy........p..gslkyleidaktfadwgvdllkldgcysnleel..aegykels....lalnktgrsivys.cewplyavvkkkkvdyte 180
                  g   c+ y        p  gs  ++++d  +f++wg d++k+d c  + e l   + y+++s    +a  +tgr++v s c+w + +        ++ 
   KIR61052.1 143 GRDGCGYYyptgrpaaPgsGSEGHYDQDFLAFSQWGFDFVKVDWCGGSAEGLnpRTTYQAISdsiaRATAQTGRPMVLSvCNWGVQSP-------WDW 233
                  *****976655555554335799**********************96666551157898876211156678*****99879**98773.......444 PP

                  HHHH-SEEE-SS--..-SSHHHHHHHHHHHHHTHHHHTTT-BTTBEEE---B-TTSSSS-HHHHHHHHHHHHHTT--EEE-S-TTS--HHHHHHHT-H CS
  Melibiase_2 181 iaktcnlwrnyddi..qdswdsvkeivdyfaenqdvlvevagpgkwndpdmliignfglsldqqraqmalwailaapllmsndlrkispeakalllnk 276
                     +  +wr   di  + + +s+  ++  f + q+  ++    g++ndpdmli g  g+   q+r+ + lwai  apll  n+l ++s+e++a+l n+
   KIR61052.1 234 APGMSTMWRTSGDIiyYGQQASMDRVLANFDSAQHPAAQ--SVGHYNDPDMLIAGMPGFNAAQNRTHLGLWAISGAPLLAGNNLATMSAETRAILGNR 329
                  4567889******94446788999999988888876554..568****************************************************** PP

                  HHHHHHT- CS
  Melibiase_2 277 eviainqd 284
                  eviai+qd
   KIR61052.1 330 EVIAIDQD 337
                  *******9 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5  10.3   9.4e-33   1.9e-29       2     127 .]     437     560 ..     436     560 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 9.4e-33
                     EEEEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEETTSEEEETT.TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTTEEE CS
  Ricin_B_lectin   2 sgeirnvasgkCLdvegeska.gapvglydChgskgkQlwtltkdgeirskaqselCldvs..staegakvvlakChkgkgnqrWefdkdgtqir 93 
                     +g +++++sg CLdv++ +++ g++++l+dC+g+++ Q wt+t+ +++r+   +++Cld+   +ta+g++vv+++C+ +++nq+W+++ dgt ir
      KIR61052.1 437 TGGLVGRQSGRCLDVNNFATTnGTQAQLWDCTGASN-QTWTYTSARQLRVY--GNKCLDAYnaGTANGTRVVIWDCN-DQANQQWTVNADGT-IR 526
                     577999***********9999*************88.*************6..9**********************9.999***********.** PP

                     ETTTSEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  94 hkksgkCLdvkgasksne.klilkkcdsgsdsQkW 127
                      ++sg+C+d++ga ++n+ k++l++c  ++d+Q+W
      KIR61052.1 527 GAQSGLCVDASGAATANGtKIVLWTC-GSADNQRW 560
                     ************************99.******** PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   4.5   4.9e-15   9.8e-12      17      89 .]     440     507 ..     424     507 .. 0.88
   2 !   31.1   1.7   1.4e-10   2.8e-07      23      58 ..     488     523 ..     483     526 .. 0.88
   3 !   37.8   4.5   1.2e-12   2.4e-09       1      53 [.     513     561 ..     513     563 .] 0.93

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 4.9e-15
                      EECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  17 iknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      ++ ++sg++Ldv++ +t+ng+++q w+c+ga nq+W+ ++      +++   + k+Ld ++++tanGt+v +w
       KIR61052.1 440 LVGRQSGRCLDVNNFATTNGTQAQLWDCTGASNQTWTYTS----ARQLRVYGN-KCLDAYNAGTANGTRVVIW 507
                      66789********************************854....557777554.7****************99 PP

  == domain 2  score: 31.1 bits;  conditional E-value: 1.4e-10
                      SEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCE CS
  RicinB_lectin_2  23 gkvLdvaggstanganvqqwtcsgaanqqWrledtg 58 
                      +k+Ld+ +++tang++v+ w+c+++anqqW+++ +g
       KIR61052.1 488 NKCLDAYNAGTANGTRVVIWDCNDQANQQWTVNADG 523
                      8******************************95544 PP

  == domain 3  score: 37.8 bits;  conditional E-value: 1.2e-12
                      CCGEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEE CS
  RicinB_lectin_2   1 anQqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWr 53 
                      anQqWt+    +   ti+ ++sg+++d++g++tang++++ wtc +a+nq+W 
       KIR61052.1 513 ANQQWTV----NADGTIRGAQSGLCVDASGAATANGTKIVLWTCGSADNQRWS 561
                      69*****....4445*************************************6 PP

>> Melibiase_C  Alpha galactosidase C-terminal beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.1   2.3e-16   4.6e-13       3      70 ..     352     424 ..     350     425 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 2.3e-16
                  TEEEEEEE-S.SS-EEEEEEE-E......EEEE-GTT--S-..EEEEETTTTEEE-..TT--EEEE-TT-EEEEE CS
  Melibiase_C   3 dlqvWakpLs.dGdvaValfNrt....tvtvdwsdlglpgsssysvrDlWtgkdlg..tgsssaevpphgvvllr 70 
                  +lqv++k L+ +G++aV+l+Nrt    tvt++++dlgl g+   svr++Wt +dlg  t+s+ ++vp+ ++vll+
   KIR61052.1 352 GLQVYSKVLAtSGQRAVLLLNRTgsaaTVTARFADLGLGGT--ASVRNVWTATDLGarTTSYATSVPAREAVLLV 424
                  79******996799*******53345599************..***********885344469*********997 PP

>> Melibiase  Melibiase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   1.5e-08     3e-05      51     124 ..      67     140 ..      48     143 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.5e-08
   Melibiase  51 vyfdfn..edklkeladea.aklGielfvlDDGWfgkrnddnssLGDWfvneeklpdgleelakevhekglkfGlWv 124
                    d+n  ++++ +l+ +  ++ G e + +D+GW+   +d   + G+ +v+++++p+g++++a+++h+kglk G++ 
  KIR61052.1  67 AKIDYNviKAQVDSLVSSGlKDAGYEYVNIDEGWWQGTRD---AAGNITVDTTEWPGGMKAIADYIHSKGLKAGIYT 140
                 34455533678888887753889***********966554...56899**************************986 PP

>> Glyco_hydro_97  Glycoside hydrolase 97
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.4e-06    0.0068      46     138 ..      88     195 ..      58     216 .. 0.77
   2 ?   -0.7   0.0      0.35     7e+02     110     170 ..     476     544 ..     448     546 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.4e-06
  Glyco_hydro_97  46 engleyvlvegwdegWee.kkkkekefdftkpypdfdleelvaYakekgvgvelwlhsetsgnvan............lekqldkafklyeklGv 127
                     + g+eyv +   degW + +  +  +  + ++     ++++++Y ++kg +  +++     g+                e + d+ f  ++++G+
      KIR61052.1  88 DAGYEYVNI---DEGWWQgTRDAAGNITVDTTEWPGGMKAIADYIHSKGLKAGIYTDAGRDGCGYYyptgrpaapgsgSEGHYDQDFLAFSQWGF 179
                     57999****...9999874444444555555555589************99999999887666655789999****9888889************ PP

  Glyco_hydro_97 128 kgvKvdfvgr.....d 138
                     + vKvd+ g+     +
      KIR61052.1 180 DFVKVDWCGGsaeglN 195
                     *******998544443 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.35
  Glyco_hydro_97 110 n.........lekqldkafklyeklGvkgvKvdfvgr.ddqemvnhyekvlekAakyklmvdfHgavkptG 170
                     +         + +++ +a++  + +G + v  d  ++ ++q++vn       + a+  l+vd+ ga + +G
      KIR61052.1 476 TytsarqlrvYGNKCLDAYNAGTANGTRVVIWDCNDQaNQQWTVNADGT--IRGAQSGLCVDASGAATANG 544
                     1222444555777776777788888888888888777677788876544..46788888888888777666 PP

>> Raffinose_syn  Raffinose synthase or seed imbibition protein Sip1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6     5e-05       0.1     201     250 ..      57     109 ..      47     127 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5e-05
  Raffinose_syn 201 fGwctwdafylevdaegvekGvksledGGvpP...kfviiddGwqsiekdedl 250
                    +Gw +w++f  ++d + +++ v sl+  G      ++v id+Gw +  +d+ +
     KIR61052.1  57 MGWASWNTFAAKIDYNVIKAQVDSLVSSGLKDagyEYVNIDEGWWQGTRDAAG 109
                    7**************************9975422289*******998888763 PP

>> MucBP_2  Mucin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.031        61      26      52 ..      66      98 ..      62     116 .. 0.75
   2 ?    7.2   0.4    0.0038       7.5       9      71 ..     455     519 ..     449     521 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.031
     MucBP_2 26 getisY.stadtik.....aleaqgYvlvssdg 52
                 ++i+Y   +++++      l+++gY++v+ d+
  KIR61052.1 66 AAKIDYnVIKAQVDslvssGLKDAGYEYVNIDE 98
                579999444888886667777*******97665 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0038
     MucBP_2   9 DdttnktltddtltGktgetisYstadtikaleaqgYvlvssdgfpagt...tFdnddatdqtftv 71 
                   t++++++  + tG +++t +Y++a ++  + ++  +   + g+ +gt   + d +d+ +q+ tv
  KIR61052.1 455 ATTNGTQAQLWDCTGASNQTWTYTSARQLRVYGNKCLDAY-NAGTANGTrvvIWDCNDQANQQWTV 519
                 556888888899***********9999***9999988887.7777777789999999999998887 PP

>> ET  ET module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.011        22      21      45 ..     445     469 ..     431     476 .. 0.88
   2 ?    1.0   0.2      0.28   5.6e+02      13      46 ..     478     512 ..     468     524 .. 0.76
   3 ?    3.6   0.1     0.042        84      21      44 ..     530     553 ..     513     558 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.011
          ET  21 dGeCasvsltttvngqnvtlytCdp 45 
                 +G+C  v+  +t ng++++l+ C+ 
  KIR61052.1 445 SGRCLDVNNFATTNGTQAQLWDCTG 469
                 6*******99*************85 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.28
          ET  13 stgaevaCdGe.CasvsltttvngqnvtlytCdpt 46 
                 ++  +    G+ C  +   +t ng+ v ++ C ++
  KIR61052.1 478 TSARQLRVYGNkCLDAYNAGTANGTRVVIWDCNDQ 512
                 455555566777999988999***********876 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.042
          ET  21 dGeCasvsltttvngqnvtlytCd 44 
                 +G C  +s  +t ng+++ l+tC 
  KIR61052.1 530 SGLCVDASGAATANGTKIVLWTCG 553
                 599********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3820.54
//
Query:       KIR61053.1  [L=735]
Description: glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-60  202.0   0.0    8.4e-60  201.3   0.0    1.4  1  Transgly        Transglycosylase
      1e-24   87.3   0.1      2e-24   86.4   0.1    1.4  1  Transpeptidase  Penicillin binding protein transpeptidase dom


Domain annotation for each model (and alignments):
>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.3   0.0   9.4e-64   8.4e-60       3     177 ..      78     264 ..      75     265 .. 0.92

  Alignments for each domain:
  == domain 1  score: 201.3 bits;  conditional E-value: 9.4e-64
    Transgly   3 ellaeleeeenrelvkleeippalkkavvaiEDrrFyehkGvdlkgiarAvlknlksgkssqGgSTitqQlvknlfl............seertlerKl 89 
                 +l++++ ++ nr+ v+l+ei+p +++a+va+EDrrFy+h G dl+giarA+++n+++g+++qGgST+t+Q+v+n++              +e+t+ rKl
  KIR61053.1  78 TLITTF-YDVNRTDVPLAEIAPVMREAIVAAEDRRFYSHGGTDLRGIARALVANVTGGGTEQGGSTLTMQYVRNVLKtdpnrtaeeraaATEQTVGRKL 175
                 567778.799****************************************************************87766665544333225599***** PP

    Transgly  90 keavlAlklekklsKdeILeaYlNsvylgrevyGieaAarayFgkdakdLtlaeaalLagllkaPsrynple.npeeakkrrkvvlerm 177
                 +e+ +A +le++lsKdeIL+ YlN +y+g+++yGi+aA+++yF k++++Ltl eaalLagl+++P +y+p++ + ++a +rr +vl+ m
  KIR61053.1 176 QEIRYATALEQRLSKDEILNRYLNIAYFGSGAYGIAAASQRYFAKSPAELTLPEAALLAGLVQSPDAYSPIDgDADAALARRAYVLDAM 264
                 **********************************************************************884599999********99 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.1   2.2e-28     2e-24       5     302 ..     371     676 ..     369     680 .. 0.77

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 2.2e-28
                     EEETTT-BEEEEEEESE-TTTHHCC.......TCGCCST.HHHH--BB-GGGGHHHHHHHHHHTTS.....STTSEEEEETCCEETTSS...ECT CS
  Transpeptidase   5 vldaktgevlamaskpsydpnakvg.......kneplan.ravqsqyePGStfKvvtaaaaleagv.....ikpdetlddsggkiqggqs..ikd 84 
                     ++++ tg+vlama +++y  +a  +         +pl + +   + y+ GStfK +t++aale+g+     ++  ++l++  +  +  ++   ++
      KIR61053.1 371 AVQPGTGRVLAMAVNRHYSLDANPDgqtnhpnTVNPLISgGGSVDGYQAGSTFKLFTMLAALENGKqlatgFDAPSRLPTRYAAEG--EAscGGK 463
                     7899*************96555555677677644444331456789*******************633322333333333333333..3346889 PP

                     CCCC-....SSSSEE.EHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--B--SSHHHHHHHHHTTT.SBB-HHHHHHHH CS
  Transpeptidase  85 weqdn....kgsegi.tlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaGvptrkwlegatisfgiG.ltvtplqlaqay 173
                     w  +n        g  t+ + +  S+ntyfv+l++++g+ k+ ++++++g+  +   d +  + +    +w  g+   f+ G  + tpl la+ay
      KIR61053.1 464 WCPANanpqW-MDGYrTMWDGFGRSVNTYFVWLSEQVGPAKVVEMAQRLGITFRAEADAAFARDS--AANW--GS---FTLGvAATTPLDLANAY 550
                     9888877743.34445***********************************99888888888888..6677..44...89999999********* PP

                     HHHHTTTEEE--BSEEEEEECTTEEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCT.......TTTGCG..TCTTS--EEEEEEEEECSSSTTSE CS
  Transpeptidase 174 aaiangGklvkPhlvkaivdpdgvrkvkpkelnklpisketaekvkeglkgvvsrg.......sgtata..avegykvagKTGTAevagkkgngk 259
                     a++a +G++ +P  v ++++ dg++    ++  +++ +++ a+  +++ +  v ++        gtata  +++g +vagKTG  e a    ++ 
      KIR61053.1 551 ATVAAEGTYCTPLPVVSVTAADGDKVDVGEPSCRRVLDADVARAATDAARCPVGQQttygqcdGGTATAvdTIVGRPVAGKTGSSEGAA---TE- 641
                     ***********************55555566678889999999999888776666666678888888889999999************7...22. PP

                     EEEEEEEEEEEEESTTS-SEEEEEEECTCS...SSSSCCHHHHHHH CS
  Transpeptidase 260 kegakiswfvgyapadnpkyavavlieqpk...eaaggkaaapiak 302
                            +fvg++p+    +ava +  +p+   +a g++++a++ +
      KIR61053.1 642 -------TFVGFTPQ----VAVAGIAANPDdpgDAVGSAVQAKVIA 676
                     .......8*****96....777777777775557777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 4917.56
//
Query:       KIR61054.1  [L=272]
Description: rRNA methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-28   97.8   0.0    8.2e-28   97.4   0.0    1.2  1  SpoU_methylase  SpoU rRNA Methylase family
     0.0016   18.7   0.0     0.0046   17.2   0.0    1.8  2  SpoU_sub_bind   RNA 2'-O ribose methyltransferase substrate b


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   0.0   9.2e-32   8.2e-28       3     141 ..     119     260 ..     117     261 .. 0.93

  Alignments for each domain:
  == domain 1  score: 97.4 bits;  conditional E-value: 9.2e-32
                     EEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST..T-SEGCCS..HH CS
  SpoU_methylase   3 ivvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl..kgkslsei..dl 93 
                     + +l+++++++NlGai+R a+a+g+++++l +p +ad+l ++ +r+++g+ + +++++++ + + l++++++gf+++a+++  ++ +++++  + 
      KIR61054.1 119 VAILEDVNNHTNLGAIFRGAAALGIDAVLL-SPTCADPLYRRSVRVSMGEVFAVPYAKFARWPDGLDQVRQAGFTVLALTPavDAVPIQRLtpAQ 212
                     5689*********************99888.88***********************************************977777888553377 PP

                     HTTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHH CS
  SpoU_methylase  94 kekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvaill 141
                     + ++al++G E+ Gl+  + ++ d  v +pm+  v+SLNva A+a+++
      KIR61054.1 213 RARAALLLGAEGPGLTAAAQAASDVRVVVPMRRGVDSLNVAAAAAVAF 260
                     7********************************************986 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.2e-07    0.0046       4      73 ..      40     104 ..      37     107 .. 0.86
   2 ?   -2.1   0.0      0.55   4.9e+03      27      48 ..     126     147 ..     114     157 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.2e-07
  SpoU_sub_bind   4 GlhaVleaLksgrriekllvtegradkrleellklakkrgikvelvdkekLdklsgtanHQGvvaevkpl 73 
                    G    + aL++g + ++ lv+ +    r+ + l+++   + +v+ +++++L+k +g  +H Gv a +++ 
     KIR61054.1  40 GELVLRRALRAGYPARSFLVDAK----RV-DQLADLDTGDAPVYAATPDVLEKATGFHVHRGVLASFRRR 104
                    5556789****************....43.55688888899************************99865 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.55
  SpoU_sub_bind  27 radkrleellklakkrgikvel 48 
                    +++  l+ +++ a+++gi   l
     KIR61054.1 126 NNHTNLGAIFRGAAALGIDAVL 147
                    4455578888888888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2242.63
//
Query:       KIR61055.1  [L=483]
Description: argininosuccinate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-57  193.9   0.0    6.3e-57  193.6   0.0    1.0  1  Arginosuc_synth  Arginosuccinate synthase


Domain annotation for each model (and alignments):
>> Arginosuc_synth  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.6   0.0   3.5e-61   6.3e-57       2     380 ..      16     409 ..      15     416 .. 0.86

  Alignments for each domain:
  == domain 1  score: 193.6 bits;  conditional E-value: 3.5e-61
  Arginosuc_synth   2 LaysGGlDtsviikllkeklgeeviavavdvGqeee.dldevkekalklgavksvvvDakeefvedyifpaikanalYe....drYllgtalaR 90 
                      +a+sGGlDtsv+++++++k+ +   a+++d+Gq +e d+ +v  +al++ga  + +vD++   ve+ +  a+   a +       Y  +t l R
       KIR61055.1  16 IAFSGGLDTSVAVAWMRDKG-AVPCAYTADIGQYDEpDIASVPGRALSYGAEVARLVDCRAALVEEGL-AALTCGAFHIrsggRAYFNTTPLGR 107
                      69*****************9.6779********76559**************************9865.4555555443112135999999999 PP

  Arginosuc_synth  91 PliakklvevakkegaeavahGctGkGnDqvRfevsirslaPdlkviaPvRelelt.....ReeeieyakekgipvevtkkkpysiDenllgrs 179
                       +    lv +    + ++   G+t kGnD  Rf       +P+l +  P+ +++++     R+e  e+  e+g+p   +++k ys+D n++g +
       KIR61055.1 108 AVTGTLLVRAMISDDVQIWGDGSTFKGNDIERFYRYGLLANPQLRIYKPWLDTDFVtelggRKEMSEWLLERGLPYRDSTEKAYSTDANIWGAT 201
                      999999999999*******************************************99************************************* PP

  Arginosuc_synth 180 ieagiLedpkn..appediyelt.kdpakapdepeeveiefekGvPvaldgeelsv.lelieklneiagkhGvGRiDivedRlvglksReiYea 269
                       ea +Le++++  ++ e i  +   dp+ +    e+v+i+f++G Pv+++g+e+   ++l+ ++n i+g+hG+G  D +e+R++  ksR+iYea
       KIR61055.1 202 HEAKTLEHLDTgiETVEPIMGVKfWDPSVEI-PTEDVTIGFDQGRPVTINGKEFGSpVDLVLEANAIGGRHGLGMSDQIENRIIEAKSRGIYEA 294
                      *******987633556666544313333333.4799*****************9766************************************* PP

  Arginosuc_synth 270 paalvLikahkdlekltlerevakfkkiveekyaelvYkGlwfsPlkealdafiek.tqervtGtvrvklfkGs.vvvlgReseeslYdeelas 361
                      p+  +L +a++ l + + + + +   +   ++ ++l+Y+G w +P   +l++ +++     vtG+v ++l +G+   +l  + +   Y  +  s
       KIR61055.1 295 PGMALLHAAYERLVNAIHNEDTLANYHNEGRRLGRLMYEGRWLDPQALMLRESLQRwVGAAVTGEVTLRLRRGEdYSILDTTGPAFSYHPDKLS 388
                      *************9999999888888888999*******************9999835789************735688888898899999999 PP

  Arginosuc_synth 362 ydeed..efdqkeaeGfikih 380
                      +++++  +f +++  G +++ 
       KIR61055.1 389 MERTEdsAFGPSDRIGQLTMR 409
                      986541156666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.52
# Mc/sec: 2818.19
//
Query:       KIR61056.1  [L=590]
Description: CdaR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-37  126.6   0.3    3.3e-36  124.1   0.0    2.4  3  PucR      Purine catabolism regulatory protein-like family
    6.3e-16   57.9   3.2    1.5e-15   56.7   2.1    2.3  2  HTH_30    PucR C-terminal helix-turn-helix domain
    5.6e-08   33.0  21.0    3.9e-06   27.1  13.9    4.0  3  GGDEF_2   GGDEF-like domain
  ------ inclusion threshold ------
      0.067   13.3   5.2        6.4    7.0   0.4    3.5  3  HTH_28    Helix-turn-helix domain
       0.13   12.2   3.3       0.27   11.2   0.7    2.9  2  HTH_1     Bacterial regulatory helix-turn-helix protein, lysR


Domain annotation for each model (and alignments):
>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.1   0.0   9.1e-40   3.3e-36       2     117 .]       8     129 ..       7     129 .. 0.94
   2 ?   -1.6   0.0       0.9   3.2e+03      86     101 ..     468     485 ..     437     488 .. 0.64
   3 ?   -3.5   0.0       3.5   1.2e+04      59      90 ..     529     561 ..     527     565 .. 0.73

  Alignments for each domain:
  == domain 1  score: 124.1 bits;  conditional E-value: 9.1e-40
        PucR   2 llklpsl.ea.akvvaGkagldrpVrwvhvlevpdiaellrggeLllttglalkddpealaelvrelaeagvaaLviklgr....eipeelieaadelg 94 
                 +l+l+ + ++ +++vaG+agldrpVrwvhv+evpdia+llrggeL+lttg++l+ +++ l++++ ela+ gv++Lv++lgr     +p+ + +aa ++g
  KIR61056.1   8 ILALDPIrHGaPRLVAGEAGLDRPVRWVHVAEVPDIASLLRGGELVLTTGIGLPGEDAGLRAFIGELADVGVSGLVVELGRryvsGVPRVMAAAAARRG 106
                 788888866679*****************************************8899***********************5578899************ PP

        PucR  95 lPlielpeevpfveiieevleai 117
                 lPl+el++ +pfv ++e+v+  i
  KIR61056.1 107 LPLVELRRATPFVRVTEAVHALI 129
                 ********************987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.9
        PucR  86 lieaa..delglPlielp 101
                 + +aa  d+++lP++ lp
  KIR61056.1 468 VADAArrDRRDLPVFRLP 485
                 444442267899999998 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3.5
        PucR  59 laelvrelaeagvaaLviklgr.eipeelieaa 90 
                 l++++++  ++ +aa +  l r +  e+l ++a
  KIR61056.1 529 LRAYLEQGRNKSAAAAAAHLSRpAFYERLARIA 561
                 788999999999999998886446666666665 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.2   7.8e+03       4      19 ..     303     318 ..     301     320 .. 0.80
   2 !   56.7   2.1   4.2e-19   1.5e-15       1      59 []     525     583 ..     525     583 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.2
                 HHHHHHHTTT-HHHHH CS
      HTH_30   4 TLraylenggnisatA 19 
                  L a l++++ ++++A
  KIR61056.1 303 LLTALLDHSRPVDEVA 318
                 4788999999998887 PP

  == domain 2  score: 56.7 bits;  conditional E-value: 4.2e-19
                 ...HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHH CS
      HTH_30   1 LleTLraylenggnisatAkaLhvHrnTlryRLrrieellgldlddpddrlaLylAlrl 59 
                 Ll TLrayle+g+n+sa+A+a h++r  ++ RL ri ++l+ dld+ + +l+L++Al++
  KIR61056.1 525 LLGTLRAYLEQGRNKSAAAAAAHLSRPAFYERLARIARILDADLDSVEVCLSLHVALLA 583
                 789*****************************************************975 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0014       5.1       8      76 ..     161     234 ..     135     245 .. 0.75
   2 !   27.1  13.9   1.1e-09   3.9e-06       6     115 ..     315     470 ..     309     471 .. 0.74
   3 ?   -0.6   0.1      0.41   1.5e+03      59      86 ..     508     535 ..     489     567 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0014
     GGDEF_2   8 llerarrlg...ldldgpyvvvvielee.daerllraleealralgpdalvavrgdrlvlllpaede.edaeal 76 
                 ++++a++ g   +  + +++v++ ++++ +ae ll+ +e++ r+ +p+  +a ++dr +l+ ++ ++ +d+ +l
  KIR61056.1 161 VRQAAELSGcpvVLENLSRQVLAYDPAGqSAELLLDGWEQHSRRISPPGRTAYDSDRGWLVTTVGARgQDWGRL 234
                 333334444333345667889999987757777****************************9987752445555 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 1.1e-09
     GGDEF_2   6 eellerarrlgldldgpyvv.vviel....................eedaer.......llraleealralgpdalvavrgd.rlvlllpaedeedaea 75 
                 +e++ rar+lg+ ld++++v vv++                     e    +       l +a+ +alr+++ + l    +d  + +ll+++d+++ ++
  KIR61056.1 315 DEVALRARALGVVLDRRHLVgVVVRWrtdepaadgappeepgpadpE----AgparlrdLSEAVGQALREAKLTGLSSAVDDqAVGVLLALSDPAAEDR 409
                 4999***************9667777888888877777666654430....15555666************8888887766625668888888877775 PP

     GGDEF_2  76 llerlarrlgg.....................lsvriGiGspveglaglrrSyreArrAlr 115
                 +l+++a++l++                       v +++Gs v +l+++rrS+ eAr++++
  KIR61056.1 410 ALAAFAAALRRnrvdaagprtaepaparatgaGAVIVAAGSGVGSLREARRSLVEARQVAD 470
                 55555544444444555556666666666668**************************987 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.41
     GGDEF_2  59 drlvlllpaedeedaeallerlarrlgg 86 
                  +l +ll+ +++  +e+ll +l++ l++
  KIR61056.1 508 RELGALLAYDARHPREQLLGTLRAYLEQ 535
                 5667788888888888888888888776 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.91   3.3e+03       8      21 ..      89     103 ..      88     106 .. 0.77
   2 ?    6.5   0.0    0.0025         9      10      39 ..     308     343 ..     302     348 .. 0.79
   3 ?    7.0   0.4    0.0018       6.4       6      35 ..     529     559 ..     527     563 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.91
      HTH_28   8 llaaGh.svreaAre 21 
                 ++ +G+ +v++aA++
  KIR61056.1  89 RYVSGVpRVMAAAAA 103
                 788999888887765 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0025
      HTH_28  10 aaGh.svre...aArelgi..srrtvyrWikryeeg 39 
                 +++  +v+e   +Ar+lg+  +rr++ + + r+++ 
  KIR61056.1 308 LDHSrPVDEvalRARALGVvlDRRHLVGVVVRWRTD 343
                 4443366667779*********************95 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0018
      HTH_28   6 iklla.aGhsvreaArelgisrrtvyrWikr 35 
                 +++++ +G++ ++aA++ ++sr   y  + r
  KIR61056.1 529 LRAYLeQGRNKSAAAAAAHLSRPAFYERLAR 559
                 577884678**************99987766 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.1     4e+03      42      58 ..     106     124 ..      94     124 .. 0.62
   2 ?   11.2   0.7   7.4e-05      0.27       4      45 ..     526     568 ..     524     568 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
                 TS-SEE..ESSSE...EEE-HH CS
       HTH_1  42 gvpLfe..Rtgrg...lrLTea 58 
                 g pL+e  R       +r+Tea
  KIR61056.1 106 GLPLVElrR---AtpfVRVTEA 124
                 678888522...1235888876 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 7.4e-05
                 HHHHHHHHHHS.SHHHHHHHHTS-HHHHHHHHHHHHHHHTS-S CS
       HTH_1   4 lrlfvavaeeg.sftrAAeeLglsqpavsrqikrLEeelgvpL 45 
                 l ++ a  e+g + ++AA + +ls pa   +++r  + l+++L
  KIR61056.1 526 LGTLRAYLEQGrNKSAAAAAAHLSRPAFYERLARIARILDADL 568
                 67888999999999********************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4120.94
//
Query:       KIR61057.1  [L=448]
Description: hypothetical protein TK50_25085 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2949.82
//
Query:       KIR61058.1  [L=452]
Description: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.4e-18   65.2   0.0    1.4e-17   64.3   0.0    1.5  1  Mur_ligase_M  Mur ligase middle domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0     8e-22   1.4e-17       1     191 [.     116     281 ..     116     282 .. 0.87

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 8e-22
                   EESSS-HHHHHHHHHHHHHCTEEEEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHC.TTTCCHCBESEEEE---TSTTHHHHSSHHHHHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvgttnneiglpktlaemekkeaeyavlEvsshglge.krlegllkpdvavitnispdHldfhgtlenyae 96 
                   vTG++GK+Tt++li ++l++        g+    ig+p++   + +  a+++vlE+ss+   + + l +  +p+vav+t + p+Hld hg   +y++
    KIR61058.1 116 VTGSKGKSTTSSLISHLLTAVDRPNVFGGN----IGVPLLD--LPD--ADLYVLELSSY---QcADLTD--SPRVAVVTALFPEHLDAHGGEREYYR 199
                   9***********************999**9....****876..555..89*********...5577777..8************************* PP

                   HHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEE..EEESSCSCHHHHHHHHHHHH CS
  Mur_ligase_M  97 aKaelferlkeegiavinaddpyakelikklkkakvkvvtfglekeaedlraknieeksegteiellevkggele..ieipllGkhnvyNalaaiaa 191
                    K +l+++ +  ++ v+n  dp   +l+++l +++  +v+ g  + +       +    +gt    +++ +  l     +pl+G+hn  N+++a+a+
    KIR61058.1 200 DKLNLLAHGP--QTIVVNGADP---RLAAELGDRP--AVRAGSPDTT------HVAPGPDGTPW--FHLGDRPLFarAVLPLVGRHNEGNLCVALAV 281
                   *******888..59********...8999988885..8888888876......58899999997..65744444435788***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 3013.72
//
Query:       KIR61059.1  [L=142]
Description: hypothetical protein TK50_25095 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.016   14.8  10.8      0.016   14.8  10.8    1.5  2  Peptidase_M50B   Peptidase M50B-like
          7    6.6  10.0         75    3.3  10.0    2.1  1  RseC_MucC        Positive regulator of sigma(E), RseC/MucC


Domain annotation for each model (and alignments):
>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.33     3e+03      78      92 ..      30      44 ..      28      58 .. 0.67
   2 ?   14.8  10.8   1.8e-06     0.016      71     132 ..      63     126 ..      58     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.33
  Peptidase_M50B 78 allGlllillsasgk 92
                    +++G+ll++l+ +++
      KIR61059.1 30 PFWGGLLVALGGAEI 44
                    577777777766554 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.8e-06
  Peptidase_M50B  71 laGYlgpallGlllillsasgkarlllvllvllllvllllvrnlfglvllll..lgallllvll 132
                     laGYl p +l l+++ll+a+   rl+  l+ l+l+++ +l+ nl g ++ +l  l++++l++++
      KIR61059.1  63 LAGYLVPVILLLCGVLLLAHPPQRLFYALVSLVLALVSWLTSNLGGFFVGMLlaLVGGCLAFAW 126
                     69******************************************99976555115556666666 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3  10.0    0.0084        75      69     110 ..      64     103 ..      61     140 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0084
   RseC_MucC  69 lvYllPllllilgallgsallgssellaalgallglvlgfli 110
                   Yl+P++ll++g+ll       + l+ al++l+++++++l 
  KIR61059.1  64 AGYLVPVILLLCGVLLLAHP--PQRLFYALVSLVLALVSWLT 103
                 67**************9999..79999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1084.12
//
Query:       KIR61060.1  [L=209]
Description: cholesterol esterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1514.96
//
Query:       KIR61061.1  [L=270]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-07   31.4   0.1    2.5e-07   30.4   0.1    1.6  1  TetR_N    Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.1   1.4e-11   2.5e-07       8      46 ..      65     103 ..      58     104 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1.4e-11
                 HHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHH CS
      TetR_N   8 lfaerGydattvreIAkrAGvskgalYryFpsKeeLlea 46 
                   a rGyd++ v +I  +AGv+++a+Y  F++Ke+ ++a
  KIR61061.1  65 EVAARGYDNARVTDICGAAGVTRPAFYALFAGKEDAFLA 103
                 5689******************************97776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1973.23
//
Query:       KIR61062.1  [L=223]
Description: Tat pathway signal sequence domain protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1582.92
//
Query:       KIR61063.1  [L=434]
Description: aminotransferase class III [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.4e-90  301.2   0.0    1.2e-89  300.9   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
    0.00037   19.8   0.0       0.28   10.3   0.0    2.1  2  Aminotran_1_2  Aminotransferase class I and II
  ------ inclusion threshold ------
       0.11   11.4   0.2       0.17   10.8   0.2    1.2  1  Aminotran_5    Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.9   0.0   1.9e-93   1.2e-89      12     406 .]      26     424 ..      20     424 .. 0.90

  Alignments for each domain:
  == domain 1  score: 300.9 bits;  conditional E-value: 1.9e-93
                  EEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT.-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHHH CS
  Aminotran_3  12 vitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaak.lshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKlar 108
                   +  + G ++td++g++ylD+ ++   +++G+  P++ +av+ q+a+ l+h+s  ++   ++++laek++++ +    +vf+ nsG+eA+e+Al +a 
   KIR61063.1  26 ELVSGSGRRVTDAQGRTYLDFFGGVLTNMIGYDIPEIREAVQRQLATgLVHTS-TLYLIRQQVELAEKIARHSGIPDARVFFTNSGTEANEAALLAAT 122
                  566789**************************************988356777.9**************999998667******************** PP

                  HHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHH....CHTCCCEEEEEE-SCE CS
  Aminotran_3 109 kyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleeleale....kkkkdevaAvivEpiq 202
                  +      + + ++i+a+++++HGrt+++++vtg++   ++ ++p++    +    +   l ++ +  ++l  ++e+l+     + + +va +i Epiq
   KIR61063.1 123 N------HRRSHQILAVRNSYHGRTYATMGVTGNRGWSASALNPLQVAWLHSGERLRGLL-SRLDPADRLDAAVEDLRevlaTQTAGDVACLIAEPIQ 213
                  9......88999**********************77777777887555555554443333.33345555555566655555688899*********** PP

                  TTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSS.SSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-HHHHH CS
  Aminotran_3 203 gegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGk.lfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfgGnplaca 299
                  g gG+v+ +++ la+ r++ ++h++lli DEvqtG GrTG+ +++++  gv+pDl+t+aK++++G+ l+ v+++ae+m+ + p    sTfgGnpla a
   KIR61063.1 214 GVGGFVHGPDGLLAAWRKVLDEHGILLISDEVQTGWGRTGEhFWGYQAHGVTPDLLTFAKGIGNGFALAGVVGRAEIMESV-PAISFSTFGGNPLATA 310
                  ****************************************757899999********************************.777789********** PP

                  HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC.....HHHHHHHHHCTEE-EEETT..TEEEE---TT- CS
  Aminotran_3 300 valavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke.....keilkkakekGvlilsaGd..nvirllpplii 390
                  + +avl+ + +++l+ na+++ga+l +gL+++    + ++evRg+Glm+++e++++ +v++     ++++++ ++ G+l+++ G   nv+r+ ppl+ 
   KIR61063.1 311 AGNAVLDYLLDHDLQANAARVGAILADGLRAAVGGLDCVAEVRGRGLMLGVEFVHPGTVEPdpaltARVFEACRAGGLLVGKGGLygNVLRMGPPLTL 408
                  ********************************99999*********************999*****99*************999888*********** PP

                  -HHHHHHHHHHHHHHH CS
  Aminotran_3 391 tdeeidelleilkkal 406
                  t++e++e+l il++a+
   KIR61063.1 409 TEDEAREGLAILVDAI 424
                  ************9987 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00036       2.1      20     100 ..      59     134 ..      51     140 .. 0.74
   2 !   10.3   0.0   4.7e-05      0.28     167     282 ..     226     332 ..     179     355 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00036
                    HHHHHHHHHH..HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEE.SHHHHHHHHHHHHHHHTTT-EEEEEE CS
  Aminotran_1_2  20 lpevakaeke..galaggtlneygpidglpeleealakflgrseklklkreaavvvg.sGagaliealifllklnpgdeilvpd 100
                    +pe+++a ++    +  +t + y+  + + el e++a+  g        ++a+v ++ sG+ a+ +al +++++ ++ +il+ +
     KIR61063.1  59 IPEIREAVQRqlATGLVHTSTLYLIRQ-QVELAEKIARHSG-------IPDARVFFTnSGTEANEAALLAATNHRRSHQILAVR 134
                    566677777655577788888899888.99***********.......777788877267777777777777777777777655 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 4.7e-05
                    HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHH.HGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHH CS
  Aminotran_1_2 167 leeleklldlakkynlllfvDeaYagfvfgsldavat.ranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaava 261
                    l+ ++k+    +++++ll++De+  g   + + ++    ++v ++  l  + + +  f+laG     ++g a++ + +  +s +    ++l+ a+ 
     KIR61063.1 226 LAAWRKV---LDEHGILLISDEVQTGWGRTGEHFWGYqAHGVTPDL-LTFAKGIGNGFALAG-----VVGRAEIMESVPAISFSTFGGNPLATAAG 312
                    4679999...*************99999999999996666666654.477889999999999.....99*********999999888********* PP

                    HHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 262 aalsdallkqseleemrqrlq 282
                    +a+ d ll   +l+++++r+ 
     KIR61063.1 313 NAVLDYLLD-HDLQANAARVG 332
                    ****99975.46777666653 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   2.9e-05      0.17      34     104 ..      75     143 ..      61     165 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.9e-05
                  SSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHH CS
  Aminotran_5  34 vhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvp 104
                  vh+ +  ++++  e  ek+a+  ++++  ++ ft ++tea+++++l++ +  ++  +i+ +++ +h+ + +
   KIR61063.1  75 VHTSTLYLIRQQVELAEKIARHSGIPD-ARVFFTNSGTEANEAALLAATN-HRRSHQILAVRNSYHGRTYA 143
                  56666666677778889*********7.******************9955.88889999999999987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2726.63
//
Query:       KIR61064.1  [L=503]
Description: methylmalonate-semialdehyde dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.3e-142  473.6   0.1   6.5e-142  473.3   0.1    1.0  1  Aldedh    Aldehyde dehydrogenase family
    0.00094   18.3   0.0     0.0012   17.9   0.0    1.3  1  LuxC      Acyl-CoA reductase (LuxC)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  473.3   0.1  7.2e-146  6.5e-142       5     462 .]      23     483 ..      20     483 .. 0.97

  Alignments for each domain:
  == domain 1  score: 473.3 bits;  conditional E-value: 7.2e-146
                 SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH CS
      Aldedh   5 es.etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyae 102
                 +s ++ +v++Patg+  ++v+ a+a+dv +av+aA++a ++w++ ++++R ++L ++++++++r+++lae++t+e Gk la+a++ev++ ++v++y+++
  KIR61064.1  23 TSgRRGDVFDPATGRRTGQVALASAADVADAVEAAARAARTWRDASLAKRTAVLFAFREIVNARRDRLAEVITAEHGKVLADAAGEVQRGLEVIEYACG 121
                 5536699******************************************************************************************** PP

                 HHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHH CS
      Aldedh 103 laeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgeal 200
                   + l+g   ++ s++ ++++ r+PlGvv++I+P+NfP+++++w +  a+a+GN+vvlKP+e+ p  alllae f+eaglP+gvlnvv+g ++e+ +al
  KIR61064.1 122 IPSALRGGFSENvSTEVDSYSLRQPLGVVAVISPFNFPVMVPLWFVPVAVACGNAVVLKPSEKDPSAALLLAEWFAEAGLPDGVLNVVNG-DAEAVDAL 219
                 *******8888879****************************************************************************.999***** PP

                 HH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS CS
      Aldedh 201 vehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvg 299
                 ++hp+v++vsf+Gst+v+r+++++ ++  krv++  G+kn+++vl+daDld a++a+v++ fg+aG++C+a+s l+  e ++d++v++++e++ +l+ g
  KIR61064.1 220 LDHPGVQAVSFVGSTPVARHVHQRGTAAGKRVQALGGAKNHMVVLPDADLDLAADAAVNAGFGSAGERCMAISALVAVEPVADALVARIAERMGRLRTG 318
                 ************************9999*********************************************************************** PP

                 -TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT.E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEES CS
      Aldedh 300 dpldedtdvGPliseaqlekvekyveeakeegaklllGge.reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGL 397
                 d+++  +d+GPl+++a+++kv++yve ++++ga  +++g+  + +g+  g+++ Pt+++ vtpdm+i+++EiFGPVl v+++ + +ea++++N+++yG+
  KIR61064.1 319 DGRR-GCDMGPLVTAAHAAKVRAYVEAGVAAGAVPVVDGRdVAPDGDPGGFWLGPTLFDRVTPDMSIYTDEIFGPVLGVLRVGSYDEAVDLVNANPYGN 416
                 **66.**********************************98778888888************************************************* PP

                 EEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES..-BSHHHHHHHTEEEEEE CS
      Aldedh 398 aagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglG..reggkegleeytevktv 462
                 + ++ft+d   a+r+ +++eaG+v+iN ++ + +    fgG+k+S +G  + +g++g+ ++t+ k+v
  KIR61064.1 417 GTAIFTNDGGAARRYQHEVEAGMVGINVPIPVPMAYYSFGGWKASLFGdlHAHGADGVAFFTRGKVV 483
                 *****************************99999999***********999999********98876 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.4e-07    0.0012       7     140 ..      51     198 ..      45     275 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.4e-07
        LuxC   7 eeildlleeaaklladdeyskr..aierlakitgyeeallei.lka.....laall.kreeLkkvleseLgqpeiLde.flktke...ksyekaqprgl 92 
                  + ++ +++aa  ++d+   kr  +   +++i + +++ l+  + a     la+   + ++  +v+e + g p++L+  f ++     +sy+ +qp g+
  KIR61064.1  51 ADAVEAAARAARTWRDASLAKRtaVLFAFREIVNARRDRLAEvITAehgkvLADAAgEVQRGLEVIEYACGIPSALRGgFSENVStevDSYSLRQPLGV 149
                 55666666666666666666665544455555555555554433334343322211122222356777777777777424433323448********** PP

        LuxC  93 vlhvlsgNvpl.lpvmsilqglLvknvnllkvSssdpflaaallkslad 140
                 v  + + N p+ +p++ +  ++ ++n+ +lk+S  dp +a  l+  +a+
  KIR61064.1 150 VAVISPFNFPVmVPLWFVPVAVACGNAVVLKPSEKDPSAALLLAEWFAE 198
                 *********974799************************9999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3440.21
//
Query:       KIR61065.1  [L=460]
Description: acyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-19   70.4  23.5    1.4e-19   70.4  23.5    1.6  1  Acyl_transf_3  Acyltransferase family
  ------ inclusion threshold ------
       0.46   11.0   1.5        7.3    7.1   1.0    3.0  2  DUF4231        Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4  23.5   1.5e-23   1.4e-19       2     333 ..      17     375 ..      16     382 .. 0.82

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 1.5e-23
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3   2 aylDllRgiAillVvflHaliayspdagrgspiqasqssqi........aflggfgvplFFllSGffla....amlyrrrglsklikrRilrllip 85 
                     y+DllR++Ai++Vv++H+ +     +  g p   +++s +        +++ g   p+FFl+ Gf +a    a + r  + + ++  R  rl+ p
     KIR61065.1  17 RYVDLLRAVAICMVVAGHWGVTVIGRDAAGRP---TGHSALgdlpwaypLTWVGQVLPVFFLVGGFANAasltANRARGGDATGWLLARSARLVPP 109
                    599******************65554444443...45555566678************************************************** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3  86 lliwllliillialvaghiqanasanvtlfdetkglmfllfefpatghlWfLwalfvlylllplllrllrkvrkshlllllilllllslvfirhel 181
                    + + ll++++     + +    a     ++             +at +lWfL  ++  ++l+p++ +l+r+++  + ++l+++++l  ++ +    
     KIR61065.1 110 TTVLLLVLAAGAGGSYLWGAGEARIRTVVW-------------FATIPLWFLVPYLAAVALTPPMHALHRRFGLAVPVALVGVVALGDVGRLVGPA 192
                    ******************************.............89****************************99999999988887776655554 PP

                    xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxx RF
  Acyl_transf_3 182 fgpatsvgllplpsvla..llfflfGalladaddrdrnlsr.........glkislllsllllalillalfgqtdg.........gglvasvliqs 257
                        + ++ +    +la  l++  +G+ ++da+   +  +           l  s++++++lla++l al++ t               ++++++ 
     KIR61065.1 193 ----PLAYGS----YLAgwLAVHQAGFAWYDAHAAAGGPRGggaadgarhPLPTSRPAAVALLAGGLGALLLLTVAgpypvamlhVPGERLDNASP 280
                    ....333322....2333399999999999999999888779999999996677777777777777776666666667899999999999999999 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxx RF
  Acyl_transf_3 258 aslllvslgimllllllfalpsrsafk.......llrylgkiSygiYliHlpllmllqkllrdwgln............lgevlllvlllvvsvi 333
                    +sl+l++l+++ l l l+++ +  +++       +++  ++  ++++l+Hl    ll  +l++ gl             +  ++ll+l++v++ +
     KIR61065.1 281 PSLALLALATAQLGLVLLLRDPAERWLrrpgpwqAVIAVNSVVLTVFLWHLTAALLLVGALDALGLLptpavgtaawlaWRVPWLLLLAVVLAGL 375
                    99999999999999999999888888889***9*****************************994445556555565554444444444444333 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.1   9.1e+02      44      75 ..     277     308 ..     244     309 .. 0.72
   2 ?    7.1   1.0   0.00082       7.3      36      71 ..     340     383 ..     314     398 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.1
     DUF4231  44 svlkiltallsalvailaaleeffrykerWrr 75 
                 ++ + + all++++a l  +  ++ + erW r
  KIR61065.1 277 NASPPSLALLALATAQLGLVLLLRDPAERWLR 308
                 45555668888888999999999999999976 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00082
     DUF4231  36 s........sklgagvsvlkiltallsalvailaaleeffryke 71 
                 +              + +l++ + +l +l+++la+l+++f + e
  KIR61065.1 340 AldalgllpTPAVGTAAWLAWRVPWLLLLAVVLAGLVAVFGPVE 383
                 03444445534556689999999999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 2916.08
//
Query:       KIR61066.1  [L=66]
Description: hypothetical protein TK50_25145 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 507.89
//
Query:       KIR61067.1  [L=329]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-18   66.3   0.8    3.8e-18   65.9   0.8    1.1  1  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
     0.0033   16.9   0.1        0.2   11.1   0.0    2.2  2  ROK          ROK family


Domain annotation for each model (and alignments):
>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.8   4.2e-22   3.8e-18       1     267 []       7     307 ..       7     307 .. 0.87

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 4.2e-22
                  EEEEE-SSEEEEEEEETTTEEEEEEEE--TTS-HHH.........HHHHHHHHHHT--GGGECEE..EEESTTCCCTCTTBSEEE-...........H CS
  BcrAD_BadFG   1 vGiDgGsTttkavlmdekgevlgrgitnsanlesvrfeaaekvleealtealerageeeadieetylvgtgyGratlpekfekeiirs.........e 89 
                  vG+D+G+T+t+a  ++  ge lg+g +++ n +s++ e a+  l +al++al+  g ++a ++   ++++g Gr  ++ +  +  ++           
   KIR61067.1   7 VGLDVGGTSTRALAVTLAGERLGTGRAGGGNPTSHGAERAAAELLTALRAALS--GVDPARVRAGTIGLAGAGRLLADPDGRAA-FDGawrdaglrcP 101
                  8**************************************************97..567777777778******99999544432.2225777899999 PP

                  HHHHHHHHHHH-TT--...EEEEEETTEEEEEEEE.TTEEEEEEEESS--TTSHHHHHHHHHHHT--TTTHHHHHTT--................... CS
  BcrAD_BadFG  90 ilvhgdGavalypgtr...tvldigGqdskgiqid.kgkvenfqmndrcaageGrylgiiadelnmglreldglaekat................... 164
                    vhgd++va+++gt    + + i+G++ ++ q++  +  +   + ++ +++ G+++++++++++  l +ld  ++ ++                   
   KIR61067.1 102 YAVHGDALVAYASGTPsphGTVLISGTGAIAAQVRdLRLDRVADGHGWLLGDAGSGFWLGREAVRRLLADLDAGHAPGPlgrrvlaellgvdrvadrp 199
                  ***************99**99**************555566678****************************9999999******************* PP

                  ..........S-------SHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG.-HHHHHHH.....HHHH-S-EE- CS
  BcrAD_BadFG 165 ..........kkarinstcavfaeaelrdalsggekaedIlaglhraialrvialisrsggvtdevtltGGvak.neaavkelrklvkenygevkini 251
                             ++r +     +a+ ++ +a +   +a   +  ++  +a++++ ++   ++    v+l GG+   + ++  ++r  +  +  +     
   KIR61067.1 200 rdtvdavvqaVTRRPPVELSRLAPLVVAAAGADEPVAAGLIGAAAGHLADSAARIRPAGAAD--PVVLGGGLLTgDTPLAAAVRAELARRWPD----A 291
                  ********995567899999*********************************998776666..59***998762455566666666666655....5 PP

                  -GGGGGHHHHHHHHHH CS
  BcrAD_BadFG 252 npdsiytgalGAalfA 267
                  +     +ga GAa +A
   KIR61067.1 292 PLTTAGDGAAGAAWLA 307
                  6777788888888776 PP

>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0033        30       2      29 ..       7      40 ..       6      89 .. 0.67
   2 !   11.1   0.0   2.2e-05       0.2     201     261 ..     226     287 ..     205     310 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0033
                EEEEE-SSEEEEEEEETTS-EEEEEEE......E CS
         ROK  2 igidiGgtkialalvdeegeilarekv......e 29
                +g+d+Ggt +++  v+ +ge l + +       +
  KIR61067.1  7 VGLDVGGTSTRALAVTLAGERLGTGRAgggnptS 40
                79******************99988886643222 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 2.2e-05
                 HHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHH.HHHHHHHHHC CS
         ROK 201 iklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadkll.eairklvkky 261
                 + +a   ++va+ ++   a +la ++a +  + + + +vlgGg+   d  l +a+r++++++
  KIR61067.1 226 VAAAGADEPVAAGLIGAAAGHLADSAARIRPAGAADPVVLGGGLLTGDTPLaAAVRAELARR 287
                 5567778899***********************************99998867777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2485.67
//
Query:       KIR61068.1  [L=318]
Description: RpiR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-18   67.2   0.0    1.9e-18   66.6   0.0    1.3  1  SIS            SIS domain
    5.4e-15   55.1   0.0      1e-14   54.3   0.0    1.4  1  HTH_6          Helix-turn-helix domain, rpiR family
    1.7e-06   28.1   1.9    8.4e-05   22.6   0.0    2.5  2  SIS_2          SIS domain
     0.0006   19.3   0.0     0.0058   16.2   0.0    2.2  2  HTH_24         Winged helix-turn-helix DNA-binding
     0.0039   17.0   3.2      0.012   15.4   0.0    3.0  3  HTH_IclR       IclR helix-turn-helix domain
     0.0048   16.7   3.0       0.29   11.0   0.4    3.0  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain
  ------ inclusion threshold ------
      0.012   15.6   0.1      0.061   13.3   0.0    2.3  3  MarR           MarR family
      0.038   13.9   0.2      0.038   13.9   0.2    2.8  4  MarR_2         MarR family
       0.15   11.9   1.0        1.1    9.1   0.2    2.3  2  PELOTA_1       PELOTA RNA binding domain


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   9.4e-22   1.9e-18       2     130 ..     158     286 ..     157     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 9.4e-22
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSE CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadl 100
                 +a a r+ ++Ga  s+ +++e+++ l +ig+ + + +d +e   +  al+ ++d+ + is++g t+++++++ +a +rga+++a+T+ + spla+ adl
  KIR61068.1 158 IAGASRVNIFGASGSALVGEEMQFSLHRIGVAAWAWSDVHEGLAS-AALLGPGDVALGISHTGQTRETIELLAEAGSRGATTVALTGFPRSPLAELADL 255
                 677999***********************************7777.9**************************************************** PP

                 EEEEEEECHC.SSSHCHHHHHHHHHHHHHHH CS
         SIS 101 alyinaepet.lvastksltaqlaaldalav 130
                 +l +++ + t    ++++ + ql++ld+l++
  KIR61068.1 256 VLLTASQATTfRPDALSARHPQLVVLDLLYI 286
                 **********99999*************987 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   5.1e-18     1e-14       2      73 ..      30     101 ..      29     104 .. 0.95

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 5.1e-18
                 -HHHHHHHH-----HHHHHHHHHHHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSHHHH--HHHHH CS
       HTH_6   2 nllekiqskkekltksekkiaeyilaspdkaielsikalAkaaavSeativrfakkLGfkGFselklaLake 73 
                 ++l++++    +lt + +++ae +l++p+ a + +i +lA+ ++ S ati+rf++ +Gf+G+ +l+l +a e
  KIR61068.1  30 GVLARVRAGAAELTGALRRVAEHVLSDPEAAARATIVELAERSGTSPATITRFCRAMGFEGYADLRLGIAAE 101
                 57889999999********************************************************98876 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.6     0.023        46      28      55 ..     154     181 ..     137     192 .. 0.79
   2 !   22.6   0.0   4.2e-08   8.4e-05      97     138 .]     202     243 ..     185     243 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.023
                 HHHHHHTT--EEEEESGGGHHHHHHTSS CS
       SIS_2  28 iadslenggkvlvfGsGhSaalaeelaa 55 
                  a +++   +v +fG+++Sa+  ee+ +
  KIR61068.1 154 AAVAIAGASRVNIFGASGSALVGEEMQF 181
                 4567777789***********9999865 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 4.2e-08
                 HHTT--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2  97 rlvrlkpgDvLlviSnsGnnavvveaaeaakergmkviAlts 138
                 + + l pgDv l iS+ G+    +e++ +a +rg++++Alt+
  KIR61068.1 202 SAALLGPGDVALGISHTGQTRETIELLAEAGSRGATTVALTG 243
                 4455789*********************************97 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.9e-06    0.0058      15      41 ..      60      86 ..      58      91 .. 0.89
   2 ?    0.4   0.0      0.24   4.9e+02      16      32 ..     245     261 ..     240     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.9e-06
      HTH_24 15 nprisqreLAerlglSpstvnrrlkrL 41
                 +r ++ eLAer+g Sp+t++r  + +
  KIR61068.1 60 AARATIVELAERSGTSPATITRFCRAM 86
                589*******************98876 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.24
      HTH_24  16 prisqreLAerlglSps 32 
                 pr + +eLA+ + l+ s
  KIR61068.1 245 PRSPLAELADLVLLTAS 261
                 89999*****9999877 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.9e-06     0.012      16      48 ..      60      92 ..      57      95 .. 0.87
   2 ?   -2.8   0.1         3   5.9e+03      24      33 ..      98     107 ..      98     108 .. 0.88
   3 ?    0.3   0.2      0.31   6.1e+02      11      34 ..     227     262 ..     225     265 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.9e-06
                BSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR 16 pqeltlselArrtglpkStvhRlLqtLvelGyv 48
                + + t+ elA+r+g +++t  R+++ +  +Gy 
  KIR61068.1 60 AARATIVELAERSGTSPATITRFCRAMGFEGYA 92
                445699*********************999996 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3
                 HHHHHTS-HH CS
    HTH_IclR  24 lArrtglpkS 33 
                 +A++tg ++S
  KIR61068.1  98 IAAETGRARS 107
                 899***9999 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.31
                 T-CTTBSS............-BHHHHHHHHTS-HHH CS
    HTH_IclR  11 alaeapqe............ltlselArrtglpkSt 34 
                 +laea+ +              l+elA+   l+ S 
  KIR61068.1 227 LLAEAGSRgattvaltgfprSPLAELADLVLLTASQ 262
                 555555554455555555445788888887777776 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.4   0.00015      0.29      14      36 ..      59      81 ..      55      81 .. 0.91
   2 ?    4.7   0.1     0.013        27      16      33 ..     245     262 ..     225     264 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
  HTH_AsnC-type 14 edaRisyaeLAervGlSestvlr 36
                   + aR++  eLAer G S++t+ r
     KIR61068.1 59 AAARATIVELAERSGTSPATITR 81
                   569****************9865 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.013
  HTH_AsnC-type  16 aRisyaeLAervGlSest 33 
                    +R + aeLA+ v l++s+
     KIR61068.1 245 PRSPLAELADLVLLTASQ 262
                    799*********999986 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.1e-05     0.061      18      41 ..      63      86 ..      52      91 .. 0.86
   2 ?   -2.8   0.0       3.2   6.4e+03      20      35 ..     249     264 ..     223     266 .. 0.62
   3 ?   -2.2   0.0       2.1   4.2e+03       3      13 ..     275     285 ..     275     293 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
                EEHHHHHHHHTS-HHHHHHHHHHH CS
        MarR 18 lsvseLakklgvskstvtrvldrL 41
                +++ eLa+++g+s++t+tr+ +++
  KIR61068.1 63 ATIVELAERSGTSPATITRFCRAM 86
                6788***************98876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.2
                 HHHHHHHHTS-HHHHH CS
        MarR  20 vseLakklgvskstvt 35 
                 ++eLa+ + ++ s +t
  KIR61068.1 249 LAELADLVLLTASQAT 264
                 3467776666666665 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.1
                 HHHHHHHHHHH CS
        MarR   3 ltqfviLrily 13 
                 ++q+v+L +ly
  KIR61068.1 275 HPQLVVLDLLY 285
                 689****9998 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       4.5     9e+03      55      62 .]      17      24 ..      13      24 .. 0.80
   2 ?   13.9   0.2   1.9e-05     0.038       3      45 ..      42      86 ..      40     105 .. 0.79
   3 ?   -1.9   0.1       1.6   3.2e+03       9      37 ..     126     155 ..     126     157 .. 0.61
   4 ?   -1.9   0.1       1.6   3.3e+03      21      39 ..     246     264 ..     219     265 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.5
                ESSSSSSS CS
      MarR_2 55 pgpeDkRa 62
                ++p+D+R+
  KIR61068.1 17 ADPADRRG 24
                6899**96 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.9e-05
                --HHHHHHHHHHHCTTTS..EEEHHHHHHHHTSSHHHHHHHHHHH CS
      MarR_2  3 ltpaqarvLaaLgrrpgr..dltvgelarrlglsksavsrilkrL 45
                lt+a +rv  ++   p+   + t+ ela+r g s+++++r ++ +
  KIR61068.1 42 LTGALRRVAEHVLSDPEAaaRATIVELAERSGTSPATITRFCRAM 86
                5666677777777777778888******************99887 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.6
                 HHHHHHHCTTTSEE.EHHHHHHHHTSSHHH CS
      MarR_2   9 rvLaaLgrrpgrdl.tvgelarrlglsksa 37 
                 rvL+ + +++ r +   ++l +  +++++a
  KIR61068.1 126 RVLGQIMAADTRAMhDTAALLDLAQVERAA 155
                 789999999987333445555555555555 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.6
                 EEEHHHHHHHHTSSHHHHH CS
      MarR_2  21 dltvgelarrlglsksavs 39 
                 +   +ela+   l+ s ++
  KIR61068.1 246 RSPLAELADLVLLTASQAT 264
                 3467788887777777665 PP

>> PELOTA_1  PELOTA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.2   0.00058       1.1      21      63 ..      34      74 ..      31      84 .. 0.80
   2 ?    0.6   0.0      0.27   5.4e+02      36      66 ..     126     157 ..     124     167 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00058
    PELOTA_1 21 liKPgigEaTRvlLRRvPekvlvrdeeepdlahlllLakekgv 63
                +++ g +E T + LRRv e+vl + +e++  a +++La++ g+
  KIR61068.1 34 RVRAGAAELTGA-LRRVAEHVLSD-PEAAARATIVELAERSGT 74
                677888999987.7*******865.5577788999***99886 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.27
    PELOTA_1  36 RvPekvlvrdeee.pdlahlllLakekgvpve 66 
                 Rv  +++ +d+++ +d+a ll La+ +  +v 
  KIR61068.1 126 RVLGQIMAADTRAmHDTAALLDLAQVERAAVA 157
                 7777888888555499*******997766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2342.49
//
Query:       KIR61069.1  [L=249]
Description: sugar isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-40  136.7   0.2    2.3e-39  134.6   0.1    1.9  2  SIS_2     SIS domain
  ------ inclusion threshold ------
      0.083   12.7   0.1       0.23   11.3   0.0    1.8  2  SIS       SIS domain


Domain annotation for each model (and alignments):
>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.1   2.6e-43   2.3e-39       2     138 .]       7     145 ..       6     145 .. 0.99
   2 ?   -0.0   0.0      0.09     8e+02     101     131 ..     174     206 ..     157     242 .. 0.66

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 2.6e-43
                 HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-BTTEEEE--GGGSSSSST....THHHHHTT-TTHHHHHHHH CS
       SIS_2   2 YlaevteilerivetqaeaiekaaeliadslenggkvlvfGsGhSaalaeelaaragglaeferialpalalhtda..eatkssalerdegyakqilrl 98 
                 Y+++v+ +l+r+v++qa a+ +aa+lia+ l++gg++++fG+GhS+a a el+araggl++++ri l++l+lh da  ++++  +lerd+ +a+q+++l
  KIR61069.1   7 YAEAVRPVLDRVVDSQAGAVGRAADLIAAGLRAGGVLQAFGAGHSEAFAAELVARAGGLVPTNRISLHDLVLHGDAprDVLADPKLERDPAVAHQLYAL 105
                 999************************************************************************999********************* PP

                 TT--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2  99 vrlkpgDvLlviSnsGnnavvveaaeaakergmkviAlts 138
                 +  +pgDv+l++S+sG+n +vve+a  +   g+++iA+ts
  KIR61069.1 106 AAPQPGDVFLIASQSGINGSVVELATLVTGHGHPLIAVTS 145
                 ***************************************8 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.09
                 --TT-EEEEE-SS--S..HHHHHHHHHHHHHT- CS
       SIS_2 101 lkpgDvLlviSnsGnn..avvveaaeaakergm 131
                 +  gD+Ll +S +G     + v aa+ a+ + +
  KIR61069.1 174 APYGDALLPLSGGGAVcaVSSVTAALLAQLVTA 206
                 455666666666665433344555555544444 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.71   6.3e+03      11      23 ..      46      58 ..      43      60 .. 0.83
   2 ?   11.3   0.0   2.6e-05      0.23      48      92 ..     105     149 ..      95     153 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.71
                EESHHHHHHHHHH CS
         SIS 11 lGaGtsyaiakel 23
                +GaG s a+a+el
  KIR61069.1 46 FGAGHSEAFAAEL 58
                799***9999886 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 2.6e-05
                 GGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTS CS
         SIS  48 lalideddlvilisfsgetkdlvaaaelakergakiiaITdskgs 92 
                 la  +++d++++ s+sg + ++v++a l++  g+++ia+T+ +++
  KIR61069.1 105 LAAPQPGDVFLIASQSGINGSVVELATLVTGHGHPLIAVTSVEHT 149
                 5666899*********************************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1770.75
//
Query:       KIR61070.1  [L=470]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-23   84.1  11.6    2.1e-23   83.6  11.6    1.2  1  SBP_bac_8  Bacterial extracellular solute-binding protein
    6.6e-21   75.6  16.0    6.6e-21   75.6  16.0    1.6  2  SBP_bac_1  Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
      0.036   14.2   0.4      0.063   13.4   0.4    1.3  1  Mod_r      Modifier of rudimentary (Mod(r)) protein
       0.11   13.0   0.2       0.22   12.0   0.2    1.4  1  TFIIS_M    Transcription factor S-II (TFIIS), central domain


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6  11.6   4.6e-27   2.1e-23       6     270 ..      87     393 ..      84     408 .. 0.73

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 4.6e-27
                 HHHH-.TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHH...HHHHHHTTSB--GG...GSTTHHH........-HHHHHTT--TS.----EE CS
   SBP_bac_8   6 fekkt.gvkvnvvtaasndleqklkaalaagtapdidvvwaneda...latlaeeglladls...dldnldd........ltdalaavgydgklygvPy 89 
                 f +k+ gv+vn +  +++++ +  + ++a+     +d+v+ ++++   ++tl++eg++++l+   + + +d+        l+ ++++ ++ gk+y v +
  KIR61070.1  87 FAAKHaGVTVNMS--STQKIKTEEQPKMATQP---SDLVMNSGADmmdISTLVNEGAIEPLDdllTAPAWDSegtvadtlLPGTVEDGTFQGKFYVVNV 180
                 8999*******94..44455555555555443...34444444444569*************4444455555999777766667888899999998888 PP

                 EEEEE-EEEEEHHHHHHS...---BHHHHHHHHHHHHHH-...SEGG---GGG.GGGTHH...........ETTEE---H........HHH.HHHHHHH CS
   SBP_bac_8  90 asetpyvliynkdlleka..edpktwdellaaakklkgkf...glpdpasgwl.qaalla...........kdgksldddg......gkdglkealell 165
                 a    ++  yn +l+ k+  ++p+t+de++a+a+k+k k      +d   g++ ++al+a            d +     +        dg+  al+ +
  KIR61070.1 181 AFTV-WGNWYNGALFAKEgwQPPTTFDEFFALAPKIKAKGiapYVHDAVHGYYpRWALMAtiwksagrqavVDID-----NlkenawKADGVLPALQAW 273
                 8765.8**********98999***************877744433677799888**********86664442222.....243555677888999**** PP

                 HHHHHTT-EE-S.....--SSTTTTTSBSEEEE-TTH...HHHHH-TTTSEEEE.-.........-S--EEEEE.EEEEEBTTS-HHHHHHHHHHHHHT CS
   SBP_bac_8 166 kklkdngktydtg...adavsefanGevaftingswd...iaaaqkagkklgai.v.........pkqgsfagg.kglavpknaknedlaAldFlkwlt 247
                  kl+++   ++ +   ++ ++++ +G++af++ g+w    +aa    g++++   +         pk+ +fag+ +gl+vp++a+n++ aA++Fl+ ++
  KIR61070.1 274 EKLVKDRLLLPGNlnhTQSQQAWLDGKAAFIQVGTWLkneMAATIPPGFEMKLSdYwglgatdkaPKD-VFAGAgEGLVVPSKAPNKA-AAKEFLRAVL 370
                 ****99988855444479999**************973335555555555544443222223333677.66666268***********.6********* PP

                 TSHHHHHHHHHH---BS-S-TTT CS
   SBP_bac_8 248 spenqaalaektgyipvnksaal 270
                 s+ + a++ae t  + ++k++ +
  KIR61070.1 371 SKSGSAKFAELTKSLASTKGSGD 393
                 **********9999999998765 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6  16.0   1.5e-24   6.6e-21      18     312 ..      87     373 ..      73     376 .. 0.74
   2 ?   -2.6   0.0      0.92   4.1e+03      33      75 ..     390     427 ..     387     433 .. 0.71

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 1.5e-24
                 HHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHH...HHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE.EE...ES. CS
   SBP_bac_1  18 fekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwia...rlakaglllpldpyvkaylapgvkdaadklsssvlpkilds.kv...ly. 108
                 f ++h g++V+  s+  +  +++ +  +a+     D+++ +++++    +l+++g+ +pld+++ a +++     ad      lp++ ++ ++    y 
  KIR61070.1  87 FAAKHAGVTVNMSST--QKIKTEEQPKMATQP--SDLVMNSGADMMdisTLVNEGAIEPLDDLLTAPAWDSEGTVADT----LLPGTVEDgTFqgkFYv 177
                 555688888888776..777774444444444..477777444444455******************99998887777....78888888788999999 PP

                 EEEE.EEEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCT..HCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT..HHCSHHHHS...HHHH CS
   SBP_bac_1 109 vPly.aargliYNkdlfekagldppwtWdelveaakklkekgkkp..iggarggsasgtayyfalalakslggkvfdkdgg..gldnpegvt...aaty 199
                 v +  +++g +YN  lf+k+g +pp+t+de+ ++a k+k+kg +p     ++g++  + ++++    +ks+g + +  d    + +++++     a+++
  KIR61070.1 178 VNVAfTVWGNWYNGALFAKEGWQPPTTFDEFFALAPKIKAKGIAPyvHDAVHGYYPRWALMATI---WKSAG-RQAVVDIDnlKENAWKADGvlpALQA 272
                 ****99***************************************5545566666666666654...33333.33333333543333333336678888 PP

                 HHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE...EEEEEEEEBTTC CS
   SBP_bac_1 200 lvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi...lgayglaipkgs 295
                 ++kl+       + +   + n + ++ ++++  G+aa++ vg+w  ++ m + +  +f+++ +++   +g  +    ++++p++     + gl++p+++
  KIR61070.1 273 WEKLV-------KDRLLLPGNLNHTQSQQAWLDGKAAFIQVGTWL-KNEMAATIPPGFEMKLSDY---WGLGA----TDKAPKDvfaGAGEGLVVPSKA 356
                 88888.......8899999*************************8.4444444444444444444...55544....55555558999*********** PP

                 STHHHHHHHHHHHTSHH CS
   SBP_bac_1 296 knpeaAkkFldfllspe 312
                 +n++aAk+Fl+ +ls+ 
  KIR61070.1 357 PNKAAAKEFLRAVLSKS 373
                 **************986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.92
                 CHHHHHHHHHHHHHTTS.....SSCSEEEECGGHHHHHHHTTSBECCH CS
   SBP_bac_1  33 gsgslaqkltlaiaaGd.....gpaDviavdndwiarlakaglllpld 75 
                 gsg++ q   +a+a+ +     +p D+i++     + +   +++++ld
  KIR61070.1 390 GSGDGVQ--DTALASANelmrnAPKDLIKT-----KLF---DFYADLD 427
                 7888888..888888888888888899998.....333...5555555 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.4   1.4e-05     0.063      83     133 ..     402     452 ..     371     455 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
       Mod_r  83 eldellqkfspdallarLqtavaeaeeeSealaeeflegeieldeFvkefk 133
                   +el+++  +d ++++L    a+ ++eS++l+ee++ g  + ++Fv++ +
  KIR61070.1 402 SANELMRNAPKDLIKTKLFDFYADLDKESQNLSEELMAGRLTAQQFVDKMQ 452
                 458999*****************************************9876 PP

>> TFIIS_M  Transcription factor S-II (TFIIS), central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2     5e-05      0.22      16      86 ..     386     449 ..     359     458 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5e-05
                 T---...-.--THHHHHHHHHHHHHHHT------HHHHHHHHHHHHHS-TT-HHHHHTSSSS--STTTTS- CS
     TFIIS_M  16 eedsseaeeeedveelaaeiEealfekekkstdkkykqkvrslvfNLkdkkNpeLrrrvlsgeispeklvk 86 
                 ++ +   ++ + v++ a++  ++l     +  +  +k+k+  +++ L dk+ ++L ++++ g ++++++v 
  KIR61070.1 386 ASTK---GSGDGVQDTALASANELMR---NAPKDLIKTKLFDFYADL-DKESQNLSEELMAGRLTAQQFVD 449
                 2222...2244666777777777766...334455************.9********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3376.61
//
Query:       KIR61071.1  [L=313]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-10   40.2  34.4    5.2e-09   36.1  34.4    2.5  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1  34.4   2.9e-13   5.2e-09      24     184 ..      71     310 ..       2     311 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2.9e-13
  BPD_transp_1  24 iivllslPsfvlaillvlvf............................................................................v 44 
                   +++l ++P f +a+ l+l+f                                                                             
    KIR61071.1  71 VFFLVTVPLFTIALALFLAFllnvggredragirgvfgsglykvifffpqvlslvviavmwqqiyrsdnqglingllmkiglvdadnpigftadpeP 167
                   56788899999999988888899999999999999999999999999999999999999999999******************************76 PP

  BPD_transp_1  45 ilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG....l 137
                   +l ++    +++++++++s a++ +++++aa++s+pkd +eaa+++Gasr+++f++++lP++  +i    ++   ++l  ++l+  ++ ++G     
    KIR61071.1 168 FL-GVPAVLWWLLFIAVWSGAGFYMVLFSAAMQSIPKDIYEAALLDGASRFHTFFRITLPLLRDTISVAWVYLGFIALDMYALVFVMTPSQGgpnhA 263
                   66.66778888999************************************************99998887777777777777777777777789998 PP

  BPD_transp_1 138 gtllleailgydyseisnggvlalviavlllnlvadilqrlldprvr 184
                   +  + ++++   ++ +++g++ a+++a++++++++ +lq  + +r r
    KIR61071.1 264 SEIFASVLNFTAFQKGQFGYACAMGVALAIFTILLAALQLRITRRER 310
                   888888888888888889*********************99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2117.61
//
Query:       KIR61072.1  [L=319]
Description: sugar ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-14   53.4  14.0    2.5e-14   53.4  14.0    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   2.5     0.095   1.7e+03      51      71 ..      44      65 ..      27     119 .. 0.49
   2 !   53.4  14.0   1.4e-18   2.5e-14       3     183 ..     118     313 ..     116     315 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.095
  BPD_transp_1 51 hlilp.viillllsaapyvrli 71
                  hl+l  +++++++ ++++v+  
    KIR61072.1 44 HLFLVvWAVMVIYPLLWVVMSA 65
                  3333333333333333333322 PP

  == domain 2  score: 53.4 bits;  conditional E-value: 1.4e-18
  BPD_transp_1   3 llGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf....vilsilg.hlilpviillllsaapyvrlirraalrslpkdlveaaralG 91 
                   llG++aa    ++ +++++l++ ++  +l+lP+++ a++l+  +    ++l  lg +  l++i++++  ++ ++++++ +++r+lp++  eaa ++G
    KIR61072.1 118 LLGSMAAyvlARYEFPGNRLIYYMFLSGLTLPIYLAAVPLFKGVynmgIVLPLLGpNRHLMLILVYVAWSLSFTVFFMHSFFRTLPDSIAEAAMVDG 214
                   67888888888************************77776644466665666667445566899999999*************************** PP

  BPD_transp_1  92 asrwqifrkvvlPnalppiitglilafggllggavlleflgswpG...lgtllleailgydyseis....nggvlalviavlllnlvadilqrlldp 181
                   as+ ++f+ ++lP+a+p +i+  i+++ g +++  l+ +l+++ +    ++++ + +++  +++++     g+++ ++ a+l++++v+ ++qr ++ 
    KIR61072.1 215 ASHSRLFFSIMLPMAKPGLISIGIFNVLGQWNQWYLPTLLMQSVAgepKNQVIAQGLIELSVNQGYksdwSGLFAGVTMAMLPVLIVYIVFQRQVQS 311
                   *****************************************88855554444444444444444448887899999999999999999999998877 PP

  BPD_transp_1 182 rv 183
                    +
    KIR61072.1 312 GL 313
                   65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2311.27
//
Query:       KIR61073.1  [L=558]
Description: 3'-5' exonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-22   79.6   0.0    3.5e-21   75.7   0.0    2.1  1  DNA_pol_A  DNA polymerase family A


Domain annotation for each model (and alignments):
>> DNA_pol_A  DNA polymerase family A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.0     2e-25   3.5e-21      14     358 ..     209     534 ..     207     554 .. 0.84

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 2e-25
                 HHHHHHHHHHHHSS.C.-STTTCCCCHHHHTCCCCS.TTSBETTSBTTTCCHHHHHTS.CHHHHHHHHHHHHHHHHHTTTTGGGCCBTTTSEE--EEES CS
   DNA_pol_A  14 eleeleeeiyelag.e.fnlnSpkqlaevLfeklklpekkktktgystdeevLeklakhplaklileyrelsklkstyvdallklinkktgrihtsfnq 110
                 +l+el+++i e+ g + ++ +Sp +l   +  ++++       + ++t + vL  + +hp + l+le+ el ++ +     + + ++ ++gr h++++ 
  KIR61073.1 209 RLAELTARIAEAFGlRqVHADSPAELLRAFA-RVGV-------ELPNTRAWVLRGV-DHPAVPLVLEHKELYRIWTAH-GWAWRDAWVRDGRFHPEYVP 297
                 7899999999999986699999999999988.5553.......23799********.8**************997765.4455556678********** PP

                 SSSSSSS-EEESS-GGGS-TTSCCHHHHHHTBCG.TTCCEEEEEEETTHHHHHHHHHCT.HHHHHHHHTTH-HHHHHHHHHCTS.GGGHHHHHHHHHHH CS
   DNA_pol_A 111 tvtatGrlsssepnlqnipirteegrriRkafvaeegghvllsaDysqiELRilAhlsgdeklieafkegeDiHsktAsevfgvpveevtkeqRrqaKa 209
                  + + Gr + +   + +ip      + iR+a+va++ g+ l+ aD  q+E R+lA++sgd++l++a     D+++++A++ fg         +R +aK+
  KIR61073.1 298 GGVVSGRWATRGGGALQIP------KVIRRAVVADP-GWRLVVADAGQLEPRVLAAVSGDARLAAAGG-AGDLYAALARDSFGG--------DRPRAKV 380
                 ******************9......689*******9.799***********************98865.56************9........9****** PP

                 HHHHHHTT--HHHHHHHHTSSHHHHHHHHHHHHHHSHHHHHHHHHHHHHCCCECCEEETTCSEEEEC..............TTT-CCHCCCHHH....H CS
   DNA_pol_A 210 infGiiYGagakgLaeqlgiseeeAkefiekyferypgvksyleetleeakekgyvetllgrrrylp..............eiksknaalreka....e 290
                    G +YG +   +              +  + ++yp   +y+e   ++ +  g v+++lgr ++                e  ++ +  r++a     
  KIR61073.1 381 ALLGAMYGQTGGMAVP-----------ALAVLRRNYPTAFAYVEAAARTGEAGGLVRSWLGRTCPPGtagfadgddagvdpEAAADPQGPRARAarsrG 468
                 ********97665544...........55668899****************************987678888888887777333333333333333447 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEETTEEEEEEECCCHHHHHHHHHHHHHHHH CS
   DNA_pol_A 291 raavNapiQGsAaDiiklamikieealkeeklkarlllqvHDElvfevpeeeveevaelvkeamesav 358
                 r   N++iQ +Aa+    ++  +++al+ +  +a+l+   HDE+++ +p  ++++vae v+ +  +a+
  KIR61073.1 469 RFTRNFVIQATAAEWASTLLATLRAALAGS--DAELVFFQHDEVIVHCPAGQADAVAEAVRASGARAT 534
                 7788***********************866..79************************9998765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3576.89
//
Query:       KIR61074.1  [L=197]
Description: molybdopterin-guanine dinucleotide biosynthesis protein A [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-32  112.5   4.4    2.9e-32  112.2   4.4    1.1  1  NTP_transf_3     MobA-like NTP transferase domain
    2.1e-05   24.3   0.2    3.1e-05   23.8   0.2    1.3  1  DUF2064          Uncharacterized protein conserved in bacteri
  ------ inclusion threshold ------
      0.091   13.1   0.2          3    8.2   0.0    2.3  2  CbiX             CbiX
       0.16   11.5   0.0       0.23   11.0   0.0    1.2  1  NTP_transferase  Nucleotidyl transferase


Domain annotation for each model (and alignments):
>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   4.4   6.5e-36   2.9e-32       3     157 ..       2     159 ..       1     163 [. 0.92

  Alignments for each domain:
  == domain 1  score: 112.2 bits;  conditional E-value: 6.5e-36
                   EEEESS-TTTTTTHHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSH..CHHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHHHH...SSSCEEEEETT CS
  NTP_transf_3   3 iLAGGrSsRmggdKallplggkpllervldalraagvdevvvvggd..eevlaalarlgvrvvededpgkgplaslaaalraaa..dadavlvlacD 95 
                   i A+G ++R+gg+ all  g++pl++r++d++ +ag++++vvv g+  ++v++ ++ ++++vv+++ +g+g ++s++a+l+a++  + +av+v+++D
    KIR61074.1   2 IIAAGGGRRLGGPEALLHQGDQPLVDRMIDTMIEAGCAQIVVVLGAaaDQVRQTADLTRATVVVNRAWGTGVGSSIRAGLAALTdqRIEAVVVVPVD 98 
                   89*****************************************8876688998888889***********************7755779******** PP

                   -TT--HHHHHHHHHCHHHHTSSEEEEESSSEEEECCEEEGGGHHHHHHH.CTHTTHHHCHHHH CS
  NTP_transf_3  96 mPlltpelverllaaaaasgadvvvptyegerghpllfrarllsalaal.lgdqgarrllrrl 157
                   mP ltp++v+r++a   + ++  v++ty+g rg+p+lf +r +s +a+l ++d gar  l ++
    KIR61074.1  99 MPGLTPAAVRRVAAL--PYPDVLVCATYDGLRGYPMLFGRRHWSGIATLaSADVGARPYLLAH 159
                   **************8..679999************************9978899**9988776 PP

>> DUF2064  Uncharacterized protein conserved in bacteria (DUF2064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.2   6.9e-09   3.1e-05       2     101 ..      30     130 ..      19     146 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 6.9e-09
                 H.HHHTTSSSEEEEEE----TTHHHHHHHH-TTSEEEE--SSSHHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHHHHTTT-SEEEEEBTTS. CS
     DUF2064   2 laelaaadaaevvlaldgaldkalaeqlalakglevlpQqggdlgeRlarafdrafeageepvlliGsDcpqltaalleqAfeaLeeadaVlgpaeDG. 99 
                 ++++ +a++a++v++l +a d+  +++  +++ + v +  g  +g  +++ +++  +++ e+v+++  D+p lt+a +++  +aL   d+ + ++ DG 
  KIR61074.1  30 IDTMIEAGCAQIVVVLGAAADQVRQTADLTRATVVVNRAWGTGVGSSIRAGLAALTDQRIEAVVVVPVDMPGLTPAAVRRV-AALPYPDVLVCATYDGl 127
                 5678999*****************999899999999999****************999********************985.67888888888888885 PP

                 .SE CS
     DUF2064 100 .GY 101
                  GY
  KIR61074.1 128 rGY 130
                 555 PP

>> CbiX  CbiX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.037   1.6e+02      37      58 ..      23      44 ..      18      49 .. 0.90
   2 ?    8.2   0.0   0.00066         3      11      60 ..      51      97 ..      45      97 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.037
                ECCSCCSSHHHHC-SBSEEEEE CS
        CbiX 37 epsleealrelaeqgvkrivvv 58
                +p ++  +++++e g+ +ivvv
  KIR61074.1 23 QPLVDRMIDTMIEAGCAQIVVV 44
                68899999*************9 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00066
                HHHHHHHHHHHHCCSCCCEECESCCCECCSCCSSHHHHC-SBSEEEEEEE CS
        CbiX 11 eveklaeelrekgpfkpvelgfleleepsleealrelaeqgvkrivvvPl 60
                +v++ a+  r+    + v  ++ + +  s++ +l++l +q+++ +vvvP+
  KIR61074.1 51 QVRQTADLTRA---TVVVNRAWGTGVGSSIRAGLAALTDQRIEAVVVVPV 97
                45555555555...345778888888899********************7 PP

>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.1e-05      0.23       5     112 ..       3      98 ..       1     102 [. 0.69

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.1e-05
                      E--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHTHHHHT CS
  NTP_transferase   5 LaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvalaaelle 98 
                      +a G G RL        + +++  g+++l++  + +++++g+ +i+vvl       +++q++++++++  + ++ +  g g   +++ ++  l 
       KIR61074.1   3 IAAGGGRRLG------GPEALLHQGDQPLVDRMIDTMIEAGCAQIVVVLGA-----AADQVRQTADLTRATVVVNRAWGTGVGSSIRAGLAALT 85 
                      5555555553......24444445555*****************8888873.....33444444444423344455567799999999999999 PP

                      TSSE..EEEEETTE CS
  NTP_transferase  99 deksdelvlvLggD 112
                      d+  +e v+v++ D
       KIR61074.1  86 DQR-IEAVVVVPVD 98 
                      999.7999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1435.04
//
Query:       KIR61075.1  [L=144]
Description: glyoxalase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-28  100.1   5.5    2.9e-28   98.8   5.5    1.6  1  Glyoxalase_6  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   5.5   1.6e-32   2.9e-28       1     106 [.       5     143 ..       5     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 1.6e-32
  Glyoxalase_6   1 svvldaadpaalaaFwaaalgweveree.......................aaledpegvgpaaedaatllfqrvpe..paknrvHldlav.....e 67 
                   ++++d+adpaalaaFwa+alg +v++++                       +a++dp+g +p      +l fqrvpe  ++knrvHld+++      
    KIR61075.1   5 QITFDCADPAALAAFWAEALGHQVQAPPpgfesweqaleamgvpperrnsaSAVVDPAGTAP------RLFFQRVPEpkQVKNRVHLDVRAapglvG 95 
                   69*******************************************77776666666666666......**********999********77555553 PP

  Glyoxalase_6  68 dld.....aevarlvalGArvlreprdgthgr....vlaDPeGneFcv 106
                   d++     a+++rlv+lGA++lr+++  ++      v+aDPeGneFc+
    KIR61075.1  96 DARmaaleAAAERLVSLGATRLRRHEPAAPLAaghiVMADPEGNEFCL 143
                   33255555*****************9998777999************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1039.03
//
Query:       KIR61076.1  [L=321]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-34  118.5   4.4      6e-34  117.6   4.4    1.5  1  WYL            WYL domain
    7.7e-13   48.2   0.0    1.5e-12   47.3   0.0    1.5  1  HTH_11         HTH domain
    2.1e-06   28.0   0.3    4.6e-06   26.9   0.1    1.7  1  Rrf2           Transcriptional regulator
    6.8e-05   22.7   1.6    0.00026   20.8   1.6    2.0  1  MarR_2         MarR family
     0.0032   17.2   0.1     0.0053   16.5   0.1    1.3  1  HTH_DeoR       DeoR-like helix-turn-helix domain
     0.0045   16.7   1.3      0.018   14.8   1.3    2.1  1  HTH_23         Homeodomain-like domain
  ------ inclusion threshold ------
      0.015   15.4   0.5      0.015   15.4   0.5    2.2  2  HTH_20         Helix-turn-helix domain
      0.015   15.1   1.6      0.015   15.1   1.6    2.3  2  HTH_IclR       IclR helix-turn-helix domain
      0.017   14.7   0.2      0.032   13.8   0.2    1.4  1  HTH_24         Winged helix-turn-helix DNA-binding
      0.029   14.0   0.0      0.055   13.1   0.0    1.4  1  HrcA_DNA-bdg   Winged helix-turn-helix transcription represso
      0.036   13.8   0.1      0.098   12.4   0.1    1.7  1  HTH_39         Helix-turn-helix domain
      0.052   13.2   0.1      0.052   13.2   0.1    2.6  3  Sigma70_r4_2   Sigma-70, region 4
      0.087   13.0   0.3      0.087   13.0   0.3    2.2  2  HTH_28         Helix-turn-helix domain
      0.094   13.1   1.3       0.19   12.1   1.3    1.5  1  WYL_2          WYL_2, Sm-like SH3 beta-barrel fold
       0.15   12.1   0.0       0.25   11.4   0.0    1.2  1  HTH_Mga        M protein trans-acting positive regulator (MGA
       0.16   11.8  12.4      0.035   13.9   5.6    3.2  3  HTH_AsnC-type  AsnC-type helix-turn-helix domain
       0.27   10.7   0.3       0.46   10.0   0.3    1.3  1  CotH           CotH kinase protein
       0.73   10.1   3.0        9.3    6.6   0.1    2.9  3  PaaX           PaaX-like protein


Domain annotation for each model (and alignments):
>> WYL  WYL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   4.4     6e-37     6e-34       2     172 .]     143     313 ..     142     313 .. 0.89

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 6e-37
         WYL   2 vletlaeAieerrrvefrYrspagegeertvePyglvlkngrwYLvaydekrdeirtfrldRiselelldetfe.ppdfdlakylsksfgvfkspvevk 99 
                 +l tla+A+++  rv+frY  ++g+++ertveP+++v    rwYL+a+d +r+++rtfrldR+++  ++  +f+ +++ d+ ++++++ ++ + ++ ++
  KIR61076.1 143 LLVTLARACRDAVRVRFRYAGRDGAESERTVEPVRMVTTGRRWYLMAWDVDRGDWRTFRLDRMRQTAATTWRFRaREHPDPVAHVRRAVAEAPYRHLAR 241
                 6889*****************777777**********************************************95668899999988877766688888 PP

         WYL 100 vrfspeaarrvrerrfpdqkieeedddgsvrvelpvesleellswllsfgdeveVlePaeLreevkeeaerll 172
                 vr++ +    +re   p++  +e d dg++++ +  ++l++l+ +++++g e+eVlePaeLr+++++ a+rl+
  KIR61076.1 242 VRVHAPS-DVLRELVPPQVGRVEDDRDGWCVLVVGGDDLDWLALHVARLGFEAEVLEPAELRQALARLAHRLA 313
                 8887544.4566666677777777*******************************************999986 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   1.5e-15   1.5e-12       1      55 []       9      64 ..       9      64 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 1.5e-15
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgvpIesepgr..GYr 55
                R l +l lL + r+ ++++e+A eL v+ r vrrd+++L++lg+p+ + +g+  GYr
  KIR61076.1  9 RVLRLLALL-QRRPSWTAAEIAAELRVTDRSVRRDVQRLRALGYPVHAAAGVggGYR 64
                677889999.88888*************************************99997 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   4.6e-09   4.6e-06       1      68 [.       1      66 [.       1      70 [. 0.90

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 4.6e-09
                X---HHHHHHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTS.EEEETTT-TCEEES CS
        Rrf2  1 MklsskteyalhallyLakeeeeepvsseeiaerqnispsylekilakLrkagl.vksvrGkgGGyrLa 68
                M +++ te +l++l+ L+++++    +++eia++  + ++ +++ +++Lr  g+ v++  G+gGGyrL 
  KIR61076.1  1 MTVEATTERVLRLLALLQRRPS---WTAAEIAAELRVTDRSVRRDVQRLRALGYpVHAAAGVGGGYRLG 66
                6777788888888888888887...89**************************99************95 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   1.6   2.7e-07   0.00026       8      50 ..      11      51 ..       5      51 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.7e-07
                HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTS CS
      MarR_2  8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGL 50
                +r+La L rrp    t++e+a++l+++  +v r ++rL a G+
  KIR61076.1 11 LRLLALLQRRPS--WTAAEIAAELRVTDRSVRRDVQRLRALGY 51
                799********8..8*************************997 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   5.3e-06    0.0053       4      42 ..      12      50 ..       9      59 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.3e-06
    HTH_DeoR  4 qilellkqqgklsveelvellgvSeaTiRRDLneLeeqg 42
                 +l ll+++ + +  e++++l v++  +RRD + L + g
  KIR61076.1 12 RLLALLQRRPSWTAAEIAAELRVTDRSVRRDVQRLRALG 50
                68999******************************9887 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.3   1.8e-05     0.018       6      41 ..       9      46 ..       5      57 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
      HTH_23  6 eRlrillllae..GlsvreIAreLgvsrrTvyrwlkry 41
                + lr l ll++   ++ +eIA+eL v+ r v+r ++r 
  KIR61076.1  9 RVLRLLALLQRrpSWTAAEIAAELRVTDRSVRRDVQRL 46
                33444555554669******************966665 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.5   1.5e-05     0.015      13      52 ..      11      50 ..       5      54 .. 0.89
   2 ?   -2.8   0.2       6.9   6.8e+03      13      40 ..     289     300 ..     284     315 .. 0.43

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.5e-05
                HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCT CS
      HTH_20 13 rrilraLaraegltaselaerldlskntlsyHLrvLeeag 52
                +r+l++L r+   ta+e+a++l++++ ++++ ++ L+  g
  KIR61076.1 11 LRLLALLQRRPSWTAAEIAAELRVTDRSVRRDVQRLRALG 50
                5778888*************************99997655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.9
                 HHHHHHHSTCTTB-HHHHHHHHTS-HHH CS
      HTH_20  13 rrilraLaraegltaselaerldlsknt 40 
                 ++++++    e              +++
  KIR61076.1 289 LGFEAEV--LE--------------PAE 300
                 5554444..11..............112 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   1.6   1.5e-05     0.015       3      47 ..       8      51 ..       6      51 .. 0.96
   2 ?   -2.5   0.2       4.8   4.8e+03       9      18 ..     104     113 ..     102     130 .. 0.54

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.5e-05
                HHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
    HTH_IclR  3 dRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGy 47
                +R l++L +l ++p  +t +e+A+++ ++  +v+R +q L  lGy
  KIR61076.1  8 ERVLRLLALLQRRPS-WTAAEIAAELRVTDRSVRRDVQRLRALGY 51
                8**************.9**************************99 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.8
                 HCT-CTTBSS CS
    HTH_IclR   9 Ldalaeapqe 18 
                 L+ala+ +q 
  KIR61076.1 104 LRALAKLDQV 113
                 4455544443 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   3.2e-05     0.032       5      46 ..      10      51 ..       7      51 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.2e-05
      HTH_24  5 drkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGl 46
                 +++L lLq+ p+ + +e+A +l ++   v+r ++rL   G+
  KIR61076.1 10 VLRLLALLQRRPSWTAAEIAAELRVTDRSVRRDVQRLRALGY 51
                589**********************************99998 PP

>> HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor, HrcA DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.5e-05     0.055      25      64 ..      24      64 ..       4      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.5e-05
  HrcA_DNA-bdg 25 KgeeiAevlkrneGtvRNqlqsLkalgL.vegvpGPkGGYk 64
                   + eiA+ l+  +  vR  +q L+alg  v++ +G  GGY+
    KIR61076.1 24 TAAEIAAELRVTDRSVRRDVQRLRALGYpVHAAAGVGGGYR 64
                  5789***********************77***********6 PP

>> HTH_39  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   9.8e-05     0.098       5      45 ..      12      54 ..      10      57 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.8e-05
      HTH_39  5 rilaaLrqhgsittleamrelditr..laaRIkeLrekGyeIk 45
                r+la L+++ s t+ e  +el +t+   ++ + +Lr+ Gy ++
  KIR61076.1 12 RLLALLQRRPSWTAAEIAAELRVTDrsVRRDVQRLRALGYPVH 54
                89***********************666677*********876 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   5.2e-05     0.052      27      51 ..      23      47 ..      16      49 .. 0.91
   2 ?   -3.4   0.1         8     8e+03       4      11 ..     103     110 ..     101     112 .. 0.60
   3 ?   -2.6   0.2       4.5   4.5e+03       3      11 ..     300     308 ..     299     311 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.2e-05
                  --HHHHHHHHT--HHHHHHHHHHHH CS
  Sigma70_r4_2 27 lsykEIAellgisegtVksrlsRAr 51
                  ++ +EIA++l +++++V++ ++R r
    KIR61076.1 23 WTAAEIAAELRVTDRSVRRDVQRLR 47
                  7889******************977 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8
                   HHHHHTTS CS
  Sigma70_r4_2   4 lrealaeL 11 
                    ++ala+L
    KIR61076.1 103 ALRALAKL 110
                   45666666 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4.5
                   HHHHHHTTS CS
  Sigma70_r4_2   3 alrealaeL 11 
                   +lr+ala+L
    KIR61076.1 300 ELRQALARL 308
                   688899888 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   8.7e-05     0.087      11      40 ..      18      50 ..       9      53 .. 0.81
   2 ?   -2.4   0.1       5.5   5.5e+03       9      18 ..      90      99 ..      85     126 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.7e-05
      HTH_28 11 aGh...svreaArelgisrrtvyrWikryeegG 40
                + +   +++e+A+el ++ r+v+r ++r+++ G
  KIR61076.1 18 QRRpswTAAEIAAELRVTDRSVRRDVQRLRALG 50
                4444459999*******************9987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.5
      HTH_28  9 laaGhsvrea 18
                laaG++v+ a
  KIR61076.1 90 LAAGGTVAGA 99
                5555554433 PP

>> WYL_2  WYL_2, Sm-like SH3 beta-barrel fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.3   0.00019      0.19      58      73 ..     190     205 ..     182     206 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00019
       WYL_2  58 fDlekqgWRsfkienL 73 
                 +D+++++WR+f+++++
  KIR61076.1 190 WDVDRGDWRTFRLDRM 205
                 *************986 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00026      0.25       7      47 ..      10      49 ..       6      52 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00026
     HTH_Mga  7 klkLlelLteneksltldelakeLglseltlqsdiseLnel 47
                 l+Ll+lL   ++s t  e+a eL+ + ++++ d++ L++l
  KIR61076.1 10 VLRLLALLQR-RPSWTAAEIAAELRVTDRSVRRDVQRLRAL 49
                5789999999.***************************987 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   5.6   3.6e-05     0.035       7      42 .]      12      47 ..      11      47 .. 0.97
   2 ?   -0.2   0.1      0.95   9.4e+02       3      17 ..     138     152 ..     138     156 .. 0.87
   3 ?   -1.0   0.0       1.7   1.7e+03      16      25 ..     232     241 ..     226     248 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.6e-05
  HTH_AsnC-type  7 kILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   ++L++Lq+ ++ + ae+A+++ ++   v+r v+rL+
     KIR61076.1 12 RLLALLQRRPSWTAAEIAAELRVTDRSVRRDVQRLR 47
                   9*********************************97 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.95
  HTH_AsnC-type   3 eiDrkILeaLqedaR 17 
                    eiD  +L  L + +R
     KIR61076.1 138 EIDAELLVTLARACR 152
                    79********99998 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.7
  HTH_AsnC-type  16 aRisyaeLAe 25 
                    a ++y+ LA+
     KIR61076.1 232 AEAPYRHLAR 241
                    6799999999 PP

>> CotH  CotH kinase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00046      0.46     200     259 ..     181     243 ..     178     254 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00046
        CotH 200 kngkwrfipWDlDnafgrted..eskaetrdepe.egganpeenvLfrrlldnpefrerlkar 259
                 ++ +w+ + WD+D + +rt +   ++++ ++ ++ +++++p     +rr +++  +r+  + r
  KIR61076.1 181 TGRRWYLMAWDVDRGDWRTFRldRMRQTAATTWRfRAREHPDPVAHVRRAVAEAPYRHLARVR 243
                 5689*****************886666665555414556666666668877777777766555 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0094       9.3      28      66 ..      27      65 ..      21      68 .. 0.91
   2 ?    2.6   0.1      0.16   1.6e+02      36      62 ..      78     106 ..      76     112 .. 0.84
   3 ?   -1.5   0.1       3.1   3.1e+03      39      49 ..     300     310 ..     283     311 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0094
        PaaX 28 rllaelGiseslvRaalsRlakaGwlvrekegrrsfYrL 66
                ++ ael + +++vR  + Rl + G  v ++ g    YrL
  KIR61076.1 27 EIAAELRVTDRSVRRDVQRLRALGYPVHAAAGVGGGYRL 65
                7889999******************99999999999998 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.16
        PaaX  36 seslvRaals.RlakaGwlvrekegr.rs 62 
                 +e+++ +a+s Rla+ G +++++e++ r+
  KIR61076.1  78 DEEAIATAVSlRLAAGGTVAGAQEAAlRA 106
                 68899999988*********999987665 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 3.1
        PaaX  39 lvRaalsRlak 49 
                  +R al Rla 
  KIR61076.1 300 ELRQALARLAH 310
                 37999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2144.88
//
Query:       KIR61077.1  [L=154]
Description: MarR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-10   39.1   1.5    6.8e-10   38.7   0.0    1.9  3  MarR      MarR family
    1.5e-08   34.3   0.5    4.5e-08   32.9   0.3    1.9  2  MarR_2    MarR family
    3.3e-07   30.7   0.1    7.2e-07   29.6   0.0    1.6  2  HTH_27    Winged helix DNA-binding domain
     0.0029   17.5   1.7       0.02   14.8   0.1    2.5  2  HTH_1     Bacterial regulatory helix-turn-helix protein, lysR
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.095   12.7   0.0    2.1  2  PadR      Transcriptional regulator PadR-like family
        0.1   13.4   4.4       0.17   12.7   2.2    2.2  2  FliT      Flagellar protein FliT


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   2.3e-13   6.8e-10       5      57 ..      44      96 ..      43      97 .. 0.98
   2 ?   -2.4   0.2       1.6   4.6e+03      37      44 ..     109     116 ..     108     116 .. 0.82
   3 ?   -3.6   0.0       3.9   1.2e+04      20      41 ..     136     143 ..     132     145 .. 0.47

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 2.3e-13
                HHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTT CS
        MarR  5 qfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRskspeDrR 57
                ++++L++l+e gp+s++ L++++g++ s +  ++ +L ++ l+eRs++p+DrR
  KIR61077.1 44 HYRLLATLEEFGPASQATLGRRSGIHLSDMVAAVNELADRRLVERSPDPSDRR 96
                689************************************************** PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.6
                 HHHHHHHT CS
        MarR  37 vldrLekk 44 
                 +l+rLek+
  KIR61077.1 109 QLRRLEKR 116
                 589***96 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.9
                 HHHHHHHHTS-HHHHHHHHHHH CS
        MarR  20 vseLakklgvskstvtrvldrL 41 
                 +              t++l +L
  KIR61077.1 136 L--------------TELLSKL 143
                 3..............4444444 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.3   1.5e-11   4.5e-08       7      62 .]      44      97 ..      42      97 .. 0.97
   2 ?   -2.9   0.0       2.3   6.7e+03      35      46 ..     133     144 ..     131     146 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.5e-11
                HHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2  7 qarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                ++r+La L   ++   +++ l rr g+  s +  ++++L ++ Lver+p+p D+R+
  KIR61077.1 44 HYRLLATLEEFGP--ASQATLGRRSGIHLSDMVAAVNELADRRLVERSPDPSDRRR 97
                689*********9..9***************************************7 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHH CS
      MarR_2  35 ksavsrilkrLv 46 
                 +++++ +l +L 
  KIR61077.1 133 RQRLTELLSKLL 144
                 788888888886 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   2.4e-10   7.2e-07      12      68 .]      51     106 ..      41     106 .. 0.92
   2 ?   -3.5   0.0       5.2   1.6e+04      16      24 ..     131     139 ..     122     145 .. 0.63

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2.4e-10
      HTH_27  12 irhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                 ++ + +++++a l +r  +  s ++ ++++L  + Lver++d+ drr+  ++lT++G
  KIR61077.1  51 LE-EFGPASQATLGRRSGIHLSDMVAAVNELADRRLVERSPDPSDRRRNIISLTAAG 106
                 45.6689999*********************************************99 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.2
      HTH_27  16 rrrkkladl 24 
                 ++r++l++l
  KIR61077.1 131 GERQRLTEL 139
                 555556544 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   6.8e-06      0.02      29      60 .]      69     107 ..      44     107 .. 0.84
   2 ?    1.7   0.2     0.087   2.6e+02      32      43 ..     108     119 ..     108     139 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.8e-06
                 HHHHHHHHHHHHHTS-SEEE.....SSSE...EEE-HHHH CS
       HTH_1  29 avsrqikrLEeelgvpLfeR.....tgrg...lrLTeaGe 60 
                 ++s+++++ +e+ + +L+eR     + r+   ++LT+aG+
  KIR61077.1  69 HLSDMVAAVNELADRRLVERspdpsD-RRrniISLTAAGR 107
                 69*****************9666632.33479*******7 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.087
                 HHHHHHHHHHTS CS
       HTH_1  32 rqikrLEeelgv 43 
                 +q++rLE++l +
  KIR61077.1 108 QQLRRLEKRLAE 119
                 799****99875 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.25   7.4e+02      32      45 ..      42      55 ..      28      64 .. 0.75
   2 ?   12.7   0.0   3.2e-05     0.095      39      74 ..      78     111 ..      75     112 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHTT CS
        PadR 32 GslYpaLkrLekeg 45
                G  Y++L++Le+ g
  KIR61077.1 42 GYHYRLLATLEEFG 55
                55588888888755 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.2e-05
                 HHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHH CS
        PadR  39 krLekeglveseweesgegpprkyYrlTdaGrrela 74 
                 ++L + +lve++ ++s  +++r++  lT+aGr++l+
  KIR61077.1  78 NELADRRLVERSPDPS--DRRRNIISLTAAGRQQLR 111
                 6799999***998885..9***************98 PP

>> FliT  Flagellar protein FliT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.9     0.031        92      22      72 ..      75     124 ..      69     126 .. 0.74
   2 ?   12.7   2.2   5.6e-05      0.17      23      56 ..     109     149 ..      97     152 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.031
                 HHHHHHHCS--ST--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        FliT  22 qlverlreldaaplspaereekrellrrilandaeirallqprldelqkll 72 
                 ++v++l+ ++ ++ sp+ + + r++++   a  +++r +l++rl+e+q++l
  KIR61077.1  75 AAVNELADRRLVERSPDPSDRRRNIISLTAAGRQQLR-RLEKRLAECQDEL 124
                 5566677777888889999999999996666666666.5799999999987 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.6e-05
                 HHHHHHCS-.......-ST--HHHHHHHHHHHHHHHHHHHH CS
        FliT  23 lverlreld.......aaplspaereekrellrrilandae 56 
                 ++ rl+++         aplsp er++++ell+++l+  ++
  KIR61077.1 109 QLRRLEKRLaecqdelLAPLSPGERQRLTELLSKLLDHHRR 149
                 33344333344446669********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1080.04
//
Query:       KIR61078.1  [L=360]
Description: epoxide hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-41  138.8   0.4    1.9e-40  137.5   0.1    1.7  2  EHN            Epoxide hydrolase N terminus
    3.2e-13   49.9   0.1    9.3e-13   48.4   0.0    1.7  2  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
       0.23   12.1   0.0       0.42   11.2   0.0    1.3  1  Phage_rep_O    Bacteriophage replication protein O


Domain annotation for each model (and alignments):
>> EHN  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   0.1   3.2e-44   1.9e-40       1     108 []       2     107 ..       2     107 .. 0.96
   2 ?   -2.0   0.0      0.75   4.5e+03       9      24 ..     207     225 ..     203     283 .. 0.56

  Alignments for each domain:
  == domain 1  score: 137.5 bits;  conditional E-value: 3.2e-44
         EHN   1 vrpfkisvpqeelddlkkrleltrlpeeeaeeeeeweeGvtkdelkelldyWkeeydWraeearlnsfpqfkteidgldihFihlrsakpdaiPllllh 99 
                 ++pf+i+vpq+ lddl +rl +tr+p+e a++   w++G+++++lkel+++W+++ydWra+earln++p+f+teidg ++hF+h+rsakpda++l+l+h
  KIR61078.1   2 IEPFRIDVPQAALDDLDDRLGRTRWPNEVADA--GWDYGFPQARLKELVEHWRTRYDWRAQEARLNELPHFTTEIDGQNVHFVHVRSAKPDALALILTH 98 
                 68************************875554..7*9************************************************************** PP

         EHN 100 GWPgsflef 108
                 GWPgsflef
  KIR61078.1  99 GWPGSFLEF 107
                 ********8 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.75
         EHN   9 pqeelddlkkrlelt...r 24 
                 ++++ld++++ +++    +
  KIR61078.1 207 DEARLDKVRQLMANRppfQ 225
                 5667777777776643221 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.34     2e+03     164     206 ..      15      57 ..       9      83 .. 0.78
   2 !   48.4   0.0   1.6e-16   9.3e-13       2     129 ..      93     212 ..      93     230 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.34
                    HCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHC CS
  Abhydrolase_1 164 pdkskrfpssgsdnasslatgalksieqwpttdsaklllrlre 206
                     d ++r+ + +++n++ +a ++ ++ +    ++  ++  r+++
     KIR61078.1  15 DDLDDRLGRTRWPNEVADAGWDYGFPQARLKELVEHWRTRYDW 57 
                    5778888889999999999999888888888888888888888 PP

  == domain 2  score: 48.4 bits;  conditional E-value: 1.6e-16
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyper 97 
                    +l++ hG+pgs+  +    +++ L++ +f+++++  +G+g+S p ++     +  + va+    ++ +lg ++    G+++G+ i+la+ a +per
     KIR61078.1  93 ALILTHGWPGSFLEFLD--VIEPLSR-DFHLVIPSIPGFGFSGPTHE---RGWDVVRVARAWAELMRRLGYERYGAQGGDFGSGISLALGAVAPER 182
                    699**************..*******.*******************9...455555555555566******************************* PP

                    EEEEEEESECSSCCHHHHHHHHHHHHHHCHHC CS
  Abhydrolase_1  98 Vkalvllgaidpaaslieaqrqqaksfpdffd 129
                    V ++       p   l +a+ +  +++   +d
     KIR61078.1 183 VVGVHVNYL--PTRPLPDADIHLSETDEARLD 212
                    *88877666..555555555555555555555 PP

>> Phage_rep_O  Bacteriophage replication protein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     7e-05      0.42       8      56 ..      22      70 ..      15      87 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7e-05
  Phage_rep_O  8 GYtrlanelleallrakltkrqlkillavirktYgfkkksdwisnsqlv 56
                 G tr+ ne+ +a ++ ++ + +lk l   +r  Y ++ +++++++  ++
   KIR61078.1 22 GRTRWPNEVADAGWDYGFPQARLKELVEHWRTRYDWRAQEARLNELPHF 70
                 679*************************************999876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2724.07
//
Query:       KIR61079.1  [L=469]
Description: beta-glucosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.3e-153  510.0   0.0   5.2e-153  509.7   0.0    1.0  1  Glyco_hydro_1  Glycosyl hydrolase family 1


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  509.7   0.0  2.9e-157  5.2e-153       2     449 ..       2     459 ..       1     462 [. 0.97

  Alignments for each domain:
  == domain 1  score: 509.7 bits;  conditional E-value: 2.9e-157
                    GGGS-TT-EEEEE--HHHHH--TTSTT---BHHHHHHHHGGGSTTS---SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHSTTSTT---HHHH CS
  Glyco_hydro_1   2 ketfpedFlwgaataayqiEGawnedGkgesiwDtftetpgkvlegsngdvacdsYhrykeDvallkelgvkayrfSisWpRilPkGegeinekGl 97 
                    ++ fpe+F+wg+ata+yqiEG+ +edG+g+siwDt+++tpg++l+g++gdva+d+Yhr++eD+  ++elg++ayrfSisWpR+ P G+g  n++Gl
     KIR61079.1   2 TRVFPEGFVWGSATASYQIEGGATEDGRGPSIWDTYSHTPGRTLNGDTGDVAADHYHRWREDLGHIAELGLSAYRFSISWPRVQPGGSGAFNRAGL 97 
                    578********************************************************************************************* PP

                    HHHHHHHHHHHHTT-EEEEEEESS--BHHHHHH-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHTSS-STT-S-TTTHHHHHH CS
  Glyco_hydro_1  98 ayYerLidelleagieplvTlyHwdlPqaLqdeGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvvallgyltgefaPgkkdleaayeaa 193
                    ++Y+rL+d lle+g++p++T+yHwdlPq L+d+Ggw  r++  +f+eya+ + + +gd+v++w+TfnEp+++a+lgy++g++aPg ++ + a++a 
     KIR61079.1  98 DFYSRLVDGLLERGVRPVATMYHWDLPQELEDAGGWPARDTALRFQEYAAGIVEALGDRVHTWTTFNEPWCSAYLGYGSGVHAPGRTEPAGALAAV 193
                    ************************************************************************************************ PP

                    HHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHHHHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGGG..S----HHHHHHHTT--SE CS
  Glyco_hydro_1 194 HnlllaharavklykevaqkgkigivlnlslaeplseseedkeaaeraleflngwfldpvvkGdYpeemkellrergalpeiteedkellkgkadf 289
                    H+l lah+ a + ++e a+ ++++++lnl+++ p+s s++d  a+ r + ++n+ fl p++ G+Yp+++     + +   +++++d ++++ + d+
     KIR61079.1 194 HHLNLAHGLAGRVVRELAPAAELSVTLNLHVVRPASGSAADADAVRRIDALANRAFLGPLLDGAYPADLLADTAKVTDWSFVRDGDERTIAVPLDV 289
                    ************************************************************************************************ PP

                    EEEEEEEEEEEEE--...-STT---SSGGGGG-..........SBSS-B-SSSS-B-HHHHHHHHHHHHHTS----EEEEE----EE-BSSS.HHH CS
  Glyco_hydro_1 290 lglnyYtsrlvknkeseeaslskteekkleeev..........dpslpktdigwiiepeglrkllellkkeYqklpiyiteNGlgakdeiee.gkv 374
                    lg+nyY+++lv++ +  +a + ++ + + +++            +  p t +gw iep gl +ll +l++e+  lp++iteNG+++ d ++  g+v
     KIR61079.1 290 LGVNYYSTTLVRAWDGVSARSDNDGHGSSAHTPwvgaddvdflPQPGPYTAMGWNIEPAGLTELLLRLHREHPGLPLMITENGAAFDDVVTPdGRV 385
                    ***************66666666655555555599**99998878899**************************************9987657*** PP

                    --HHHHHHHHHHHHHHHHHHHTT--EEEEEEE-SB----GGGTTSEE--SEEEETTTTTEEEE-HHHHHHHHHHH CS
  Glyco_hydro_1 375 eDdkRidYlkehlnevkkaiedgvdlkgYvawsllDnfewaegyskrfGlvyvdrnetleRtpkkSakwykevie 449
                    +D++R+dYl +h+ +v  a++ g+d++gY++wsllDnfewa+gy++rfG++ vd ++t+eR+ k+Sa+wy+++++
     KIR61079.1 386 HDERRLDYLYRHIDAVGAAMDAGADVRGYFVWSLLDNFEWAWGYDRRFGIIRVD-YDTQERIWKDSAHWYRALAA 459
                    ******************************************************.9***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3518.35
//
Query:       KIR61080.1  [L=755]
Description: alpha-glucosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-119  399.8   0.2   2.2e-119  399.5   0.2    1.1  1  Glyco_hydro_31   Glycosyl hydrolases family 31
    1.1e-17   64.1   0.2    3.8e-17   62.4   0.2    2.1  1  Gal_mutarotas_2  Galactose mutarotase-like


Domain annotation for each model (and alignments):
>> Glyco_hydro_31  Glycosyl hydrolases family 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  399.5   0.2  2.5e-123  2.2e-119       1     440 []     239     668 ..     239     668 .. 0.92

  Alignments for each domain:
  == domain 1  score: 399.5 bits;  conditional E-value: 2.5e-123
                     EEEE-SSHHHHHHHHHHHH-------GGGGSEEEE-TT...--SHHHHHHHHHHHHHTT--EEEEEESCGGSBTTC..CTB-.TTTSS-HHHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31   1 yvflGptpkevvkqyteltGrpalpPrwalGfhqsryg...ykdeeeveevvdkfreagiPldvivlDidymdkrk..dftwdkerFpdpkemvd 90 
                     y++ Gptpk+v+++yt+ltGrpa +P w++G+++s+     y de++v e++d + e+++Pl+v+++D+ +m++ +  df wd+ +Fpdp++m++
      KIR61080.1 239 YLIDGPTPKDVLRRYTALTGRPARVPAWSYGLWLSTSFttsY-DEKTVTEFIDGMAERDLPLSVFHFDCFWMRQFHwvDFVWDPATFPDPEGMLR 332
                     8999*******************************9886645.******************************66566***************** PP

                     HHHHTT-EEEEEE-SEE.E.-TTSHHHHHHHHTTSBECCCCCS..TCECTSSEEEEB-TTSHHHHHHHHHHHHHHHCTCT--EEEE-STTTB.SC CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31  91 elhekgvklvvivdpaiskqeeeyeafdegkekgvflknkdgs..ykgkwpgstafpDftnpearewwkkelkkflldlgvdglwiDmnepsnfe 183
                     +lhe+g+k++v+++p+i+++   +  f+eg ++g++++n+dgs   ++kw+   a +Dftnp+a  w++++l k lld+gvd++++D++e    e
      KIR61080.1 333 RLHERGLKVCVWINPYIAQR---SYLFEEGRQAGYLVRNPDGSvwQWDKWQAGMALVDFTNPDAVAWFNSKL-KVLLDMGVDCFKTDFGERIPTE 423
                     *****************765...469*****************74444499999***************998.56679************64322 PP

                     CCCHHHHCCCTSCETTCC.HHHHCCCHHHHHHHHHHHHHHHHTTTST-EEEESSEETTGGGCTEEE--S-BSSHHHHHHHHHHHHHHHTTT--SE CS
                     xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 184 egsdseekeaketkaags.hydvhnlygllmakatyeglkekkpkkrpfiltRstfaGsqryaahWsGdnassWeslresipallsfslsGvpfw 277
                              +    ++gs  +++hn+y++l++ka++e l++++   +++++ Rs++aG q++++hW Gd++s++  ++es++++ls+s sG+ +w
      KIR61080.1 424 -------VVW----HDGSdPQRMHNYYAYLYNKAVFELLEAERGVGEAVVFARSATAGGQQFPVHWGGDCESTFVAMAESLRGGLSLSASGFGYW 507
                     .......222....33333688********************99999************************************************ PP

                     EEECT-SG.HCHHHHHHHHHHHHTTSSSEEE--STTSS--SHHHHCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH---SEE-HHHH-TT-CCC CS
                     xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 278 gaDigGFe.ntteelyaRWvqlGafsPffrnHsskdakrqepwafgeeveeaarkaielRyrLlPylYtlfyeahetglpvvrplflefpedekt 371
                     ++DigGFe ++++ ++ RW+++G++s+++r+H+s   +++ pwa+++e+ e++r++++l+ +L+Pyl  +++eah++g pv+rp+++efp+d+ +
      KIR61080.1 508 SHDIGGFEgTPDPAVFKRWIAFGLLSSHSRLHGS--GSYRVPWAYDDEAVEVLRHFTRLKLSLMPYLAAAAEEAHRDGVPVMRPMIVEFPDDPMA 600
                     *******9888**********************9..99*******************************************************99 PP

                     CC--S-EEETTTEEE----STT-SEEEEEE-SSEEEETTT--EEESSEEEEEE--TTSS-EEEETTEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 372 fdiddqfmfGdsLLvaPvleeeatsvevyLPggkWydfwtgekyeggqtveltapldeiplfvraGaIi 440
                     + +d+q+m+G++ LvaPv+++   +v+ y P+g+W+++++g +++g   v+ ++ +d++p+++r Ga+i
      KIR61080.1 601 AYLDRQYMLGPDVLVAPVMSA-DGEVTYYVPAGTWTNLVSGAQLTGPAWVTEKHGYDSLPVLARPGAVI 668
                     99*****************88.68*******88*************666555656888*********98 PP

>> Gal_mutarotas_2  Galactose mutarotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.2   4.2e-21   3.8e-17       1      65 [.     158     217 ..     158     218 .. 0.93

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 4.2e-21
                      T-EEEEEES-SS-SS-TTEEEEE-----TS-HCC.CTS-SCEEEEEEEETCEEEEEE--SSSEEE CS
  Gal_mutarotas_2   1 dehvyGlGEkagplnlrgtryrlwntdafgyeaessdplYgsiPfmislsegyGvfvdnpaetwf 65 
                      +e +yGlGE++gp+ ++g+ +++wn d        s++ Y+++Pf++s s+gyGvfvd+p  ++f
       KIR61080.1 158 GETIYGLGERFGPFVKNGQTVDIWNADGGT----ASEQAYKNVPFYLS-SAGYGVFVDHPEHVSF 217
                      589*************************85....4679**********.***********99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 5297.06
//
Query:       KIR61081.1  [L=297]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-14   53.9  15.0    1.8e-14   53.9  15.0    2.5  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        4.9    7.3   6.0         39    4.3   4.2    3.0  4  DHHC          DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.2      0.01        90     154     175 ..      90     119 ..      67     124 .. 0.64
   2 !   53.9  15.0     2e-18   1.8e-14      15     183 ..     123     291 ..     118     293 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.01
  BPD_transp_1 154 s........nggvlalviavlllnlvadil 175
                   +        +g+v++l++av lln+ a  +
    KIR61081.1  90 QklwnsaliAGSVAVLAVAVSLLNAYALGI 119
                   233545577799999999999999877666 PP

  == domain 2  score: 53.9 bits;  conditional E-value: 2e-18
  BPD_transp_1  15 kldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppii 111
                   +++ ++ + + +  +lP   l+ +l+++ +   +l+++ l vii++++ + ++ +++ +++l + pk+l eaa ++G ++w+i+++vvlPn+ p+++
    KIR61081.1 123 RGRLWIVGAFLLANMLPQESLVYPLYYF-AKEVGLYNTRLVVIIIFTVIQSAFGTYLLASVLGTFPKSLLEAAALDGSGKWTILWRVVLPNVRPTLA 218
                   5677788888889999999999999965.555589999999******************************************************** PP

  BPD_transp_1 112 tglilafggllggavlleflgswpG.lgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                    +l++ f++ ++++++++ ++ ++   + ++  a+l+ d  + + ++ + ++i++++ ++++ i+qr l++ +
    KIR61081.1 219 VLLVFFFIWTWNEFLIPLVMLIDNQtQTIPVALASLQGDRLMDAPTTNAGALISLVPAIVFFLIFQRTLSRGI 291
                   *****************99997765433333334444443333355667777778888888888888888776 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.12   1.1e+03      98     121 ..      32      55 ..       9      65 .. 0.62
   2 ?   -2.7   0.0      0.64   5.7e+03      78     105 ..      84     112 ..      69     120 .. 0.48
   3 ?    2.6   0.6     0.015   1.3e+02      43     114 ..     154     183 ..     126     195 .. 0.61
   4 ?    4.3   4.2    0.0044        39      42     127 ..     153     245 ..     148     250 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.12
        DHHC  98 lllvlsllfllllgllllfhlyli 121
                 ++l++ ++ +l++++ ++f l ++
  KIR61081.1  32 IVLAVVTVGALVMLVPFVFMLLNA 55 
                 444444444444444444444444 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.64
        DHHC  78 eeekkseflavtllkk.llsilllvlsll 105
                 ++ ++ + l+ + l +  +++l +++sll
  KIR61081.1  84 TQVDFPQKLWNSALIAgSVAVLAVAVSLL 112
                 34443333333333223344444444444 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.015
        DHHC  43 iGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkkllsilllvlsllfllllglll 114
                 +G +N +                                            ++ i+++++s++ ++ll+++l
  KIR61081.1 154 VGLYNTRLV------------------------------------------VIIIFTVIQSAFGTYLLASVL 183
                 233333222..........................................556666777777766666654 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.0044
        DHHC  42 ciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkk..........llsilllvlsllfllllgllllfhlylilrnlTt 127
                  +G +N +   ++++++++ +++ ++ll   l +  ++  +  +l  +   k           +  +l+vl ++f+++++  +l+ l++++ n+T+
  KIR61081.1 153 EVGLYNTRLV-VIIIFTVIQSAFGTYLLASVLGTFPKSLLEAAALDGSG--KwtilwrvvlpNVRPTLAVLLVFFFIWTWNEFLIPLVMLIDNQTQ 245
                 5788888876.55555555566666655554444444433333332222..1335555666667788888889********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2191.44
//
Query:       KIR61082.1  [L=322]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-16   59.4   8.6    3.6e-16   59.4   8.6    2.2  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   1.4   0.00063        11     114     183 ..      43     122 ..      33     125 .. 0.67
   2 !   59.4   8.6     2e-20   3.6e-16       7     176 ..     109     312 ..     104     318 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.00063
  BPD_transp_1 114 lilafggllggavlleflgswpGlgtllleailgydyseis...........nggvlalviavlllnlvadilqrlldprv 183
                   ++l++gg l   +  + l+ w+G+g++++  +++y   +             + +v+++v+ +++ +++a +l + + +r+
    KIR61082.1  43 FALVIGGPLLF-TGYLSLTRWSGIGDPTFVGLENYRRLLDDtvfwqsfrntlAMIVAMVVVPTVVGLVLAAVLFDTIGRRF 122
                   44455444444.444455669999999999998888776667888899888866666666667777777766666666665 PP

  == domain 2  score: 59.4 bits;  conditional E-value: 2e-20
  BPD_transp_1   7 laa........lnrnkkldkllrpliivllslPsfvlaillvlvf....................vilsilghlilpviillllsaapyvrlirraa 75 
                   ++a        ++++ ++ ++lr  +++++ lP++v +i++ +++                     +l++  ++  +v+ ++++ +++y ++++ aa
    KIR61082.1 109 VLAavlfdtigRRFKPRTANALRAAFYLPQVLPVVVAGIVWGWILrpdgalnglldavglgalshDWLGDPDTALPAVMGVMIWVQIGYPVVVFMAA 205
                   4444555677799*****************************999*****************9877777777666669******************* PP

  BPD_transp_1  76 lrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG..lgtllleailgydyseis....nggvlalviavl 166
                   l+ ++ +l+eaa+++Ga+  ++fr ++lP++ p ++  ++   +++++ +  ++ l+ +++   +++   +  +  +   +     +++ +l+++++
    KIR61082.1 206 LQRVDPELYEAAEIDGAGWARRFRAITLPQIRPETFVVALTCTIAAMKVFGPIYALTRGGPenATNVPSYFAYYTFFKKLQvgygSAISTVLTLIIV 302
                   *********************************************************8888665555555555555555558555444444444444 PP

  BPD_transp_1 167 llnlvadilq 176
                   ++ l++   q
    KIR61082.1 303 VVALLFIRAQ 312
                   4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       947  (0.0528195); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.34s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 2019.43
//
Query:       KIR61083.1  [L=434]
Description: sugar ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-32  113.9  15.7    2.2e-32  113.3  15.7    1.3  1  SBP_bac_1  Bacterial extracellular solute-binding protein
    1.4e-30  107.1  10.4    1.9e-30  106.7  10.4    1.1  1  SBP_bac_8  Bacterial extracellular solute-binding protein
    7.9e-05   22.2   0.2     0.0053   16.2   0.0    2.3  2  SBP_bac_6  Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
      0.042   13.5   1.9       0.05   13.2   0.0    2.0  2  LRR_10     Leucine-rich repeat
        6.3    6.8   5.0         12    5.9   5.0    1.4  1  LPAM_2     Prokaryotic lipoprotein-attachment site


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3  15.7   6.1e-36   2.2e-32       7     306 ..      51     337 ..      44     346 .. 0.85

  Alignments for each domain:
  == domain 1  score: 113.3 bits;  conditional E-value: 6.1e-36
                 HHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEE..CGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHC CS
   SBP_bac_1   7 gaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviav..dndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkild 103
                 g a+++++ + f++ehpg++V++e   + + +q+    i ++ gp Dv+    +n++ + l k+gll++l++ + +  +++     +  +  +++k   
  KIR61083.1  51 GVAWDKAI-EVFKQEHPGVEVRFERKAFEQIQQNAGMIINSSEGP-DVMEYnkGNATAGLLSKQGLLTDLTAEATKRGWDKALSPSLQTTARYDDKG-- 145
                 55788888.88**********************999999999999.******99***********************98887666666655555555.. PP

                 EEE.....ES.EEEEE.EEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT......HHC CS
   SBP_bac_1 104 skv.....ly.vPlya.argliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgg......gld 189
                   v     +y vP y+ + +++YNkdlf+  g+++p+t de ++a   +++kg +p   ++++ a+  a++++++la+  + + f ++++       + 
  KIR61083.1 146 --VmgsgnWYgVPNYGeYVMVYYNKDLFDRNGVKVPTTLDEMTAAMDTFVAKGITP---LGTAGAEYPAGQLFYQLALAKADRAFVDNYQlyknpvDFK 239
                 ..155558*******66***************************************...999999999999999999999999*******665555444 PP

                 SHHHHSHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEE CS
   SBP_bac_1 190 npegvtaatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayg 288
                 ++     ++y+ + +a++  +k++ gkg+++++ +++ ++f aG+++m+++g+w+          + f+a ++ +   ++ + +P+ k  +++  ++  
  KIR61083.1 240 AD----PLKYGADTFAEWV-KKGYVGKGTASAKAEDMGTAFIAGKTPMIVSGSWW---------YGRFKAEMKAN---WDSFLFPGNKLHAGS--SGNI 319
                 44....5555555555553.6**********************************.........66666665555...888888888888887..**** PP

                 EEEBTTCSTHHHHHHHHH CS
   SBP_bac_1 289 laipkgsknpeaAkkFld 306
                 +++p++sk ++ A +F+d
  KIR61083.1 320 WVVPATSKAKDLAYDFID 337
                 *****************9 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7  10.4   5.2e-34   1.9e-30       2     262 ..      57     355 ..      56     374 .. 0.75

  Alignments for each domain:
  == domain 1  score: 106.7 bits;  conditional E-value: 5.2e-34
                 HHHHHHHH-.TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH-HHHHHTT............--TS.---- CS
   SBP_bac_8   2 lakefekkt.gvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnlddltdalaav............gydgklygv 87 
                 +++ f++++ gv+v+++  a ++++q++   +++ ++pd++     ++ ++ l ++gll dl+ + +  ++++al +             ++ g+ ygv
  KIR61083.1  57 AIEVFKQEHpGVEVRFERKAFEQIQQNAGMIINSSEGPDVMEYNKGNATAGLLSKQGLLTDLTAEATKRGWDKALSPSlqttaryddkgvMGSGNWYGV 155
                 6888***********************************9878888999**************766666655555555555564444444444448*** PP

                 EEEEEEE-EEEEEHHHHHHS...---BHHHHHHHHHHH..HHH-.....SEGG---GGGGGGTHH.......ETTEE---H....HHH.HHHHHHHHHH CS
   SBP_bac_8  88 Pyasetpyvliynkdlleka..edpktwdellaaakkl..kgkf.....glpdpasgwlqaalla.......kdgksldddg..gkdglkealellkkl 168
                 P+  e   +++ynkdl++ +  ++p+t+de++aa +++  kg +     g   pa + +++++la       ++++ +++ +    d lk  ++ ++++
  KIR61083.1 156 PNYGEY-VMVYYNKDLFDRNgvKVPTTLDEMTAAMDTFvaKGITplgtaGAEYPAGQLFYQLALAkadrafvDNYQLYKNPVdfKADPLKYGADTFAEW 253
                 *98887.799********98999***********99996644444433344555555555555553466665333333333244333346666666666 PP

                 HHTT-....EE.-S..--SSTTTTTSBSEEEE-TTHHHHHH-T.TTSEEEE.--S--EEEEEEE..EEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHH CS
   SBP_bac_8 169 kdngk....ty.dtgadavsefanGevaftingswdiaaaqka.gkklgai.vpkqgsfaggkg..lavpknaknedlaAldFlkwltspenqaalaek 258
                 +++g+    t   + +d+  +f  G+  ++++gsw +  ++++ + ++    +p +++ ag++g  ++vp+ +k++dl A dF+   + pe qa   ++
  KIR61083.1 254 VKKGYvgkgTAsAKAEDMGTAFIAGKTPMIVSGSWWYGRFKAEmKANWDSFlFPGNKLHAGSSGniWVVPATSKAKDL-AYDFIDITMRPEIQALIGNN 351
                 6666533333336779*************************996679998879********9977899*********9.***************88887 PP

                 H--- CS
   SBP_bac_8 259 tgyi 262
                 +g++
  KIR61083.1 352 GGVP 355
                 7764 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0    0.0088        31      20      79 ..     111     184 ..      91     188 .. 0.64
   2 !   16.2   0.0   1.5e-06    0.0053     178     234 ..     316     371 ..     245     379 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0088
   SBP_bac_6  20 eeglfqpld.........panlpnvnkdfa..eeglkdpdgkyy..pygvgplvlavnkdrlkgrpv..PksWaD 79 
                 ++gl+++l+         +a  p++   ++  ++g+  + g++y  p + +++ +++nkd ++   v  P++ ++
  KIR61083.1 111 KQGLLTDLTaeatkrgwdKALSPSLQTTARydDKGVMGS-GNWYgvPNYGEYVMVYYNKDLFDRNGVkvPTTLDE 184
                 566666666666665555333333333333326677665.66666666666777778***998777777998876 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.5e-06
   SBP_bac_6 178 spifmlvkkg.kkkelakafidfllspevqailakaggvfPvvtnpavlnelpegakl 234
                 s + ++v++  k k+la++fid  + pe+qa + ++gg +Pv  +++ +  +p+++kl
  KIR61083.1 316 SGNIWVVPATsKAKDLAYDFIDITMRPEIQALIGNNGG-VPV-SADPSKIADPKDKKL 371
                 5678*********************************9.***.777777777776665 PP

>> LRR_10  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.4e-05      0.05      25      57 ..      40      71 ..      37      77 .. 0.83
   2 ?   -2.8   1.0       1.4     5e+03      25      40 ..     287     302 ..     284     304 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.4e-05
      LRR_10 25 nWsykGeespkGanWnFnkelDlWg.aqPGveln 57
                 W+y+Ge+s++G+ W+  k ++++  + PGve+ 
  KIR61083.1 40 LWHYEGETSAMGVAWD--KAIEVFKqEHPGVEVR 71
                5**************7..7777775168***996 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.4
      LRR_10  25 nWsykGeespkGanWn 40 
                  W y   + ++ anW+
  KIR61083.1 287 SWWYGRFKAEMKANWD 302
                 5889899999999**8 PP

>> LPAM_2  Prokaryotic lipoprotein-attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.0    0.0032        12       3      15 ..      13      25 ..      11      25 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0032
      LPAM_2  3 lllallllLaGCG 15
                l++a++++L++CG
  KIR61083.1 13 LAVAAAASLTACG 25
                89**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3248.73
//
Query:       KIR61084.1  [L=373]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-27   94.9   1.7    6.3e-27   94.9   1.7    1.9  3  Peripla_BP_3  Periplasmic binding protein-like domain
      2e-19   69.1   0.7    1.1e-18   66.8   0.4    2.3  2  LacI          Bacterial regulatory proteins, lacI family
    4.3e-16   59.2   0.1    5.6e-16   58.8   0.1    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
  ------ inclusion threshold ------
      0.014   15.7   4.6      0.015   15.6   0.2    3.2  3  HTH_31        Helix-turn-helix domain
          1    9.1   3.4         23    4.7   0.0    2.6  3  HTH_53        Zap  helix turn helix N-terminal domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.2   4.3e+03      47      47 ..      50      50 ..       9      95 .. 0.57
   2 ?   -2.1   0.0       1.2   4.3e+03      29      61 ..      80     112 ..      51     128 .. 0.62
   3 !   94.9   1.7   1.8e-30   6.3e-27       1     166 []     169     333 ..     169     333 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.2
                  E CS
  Peripla_BP_3 47 t 47
                   
    KIR61084.1 50 M 50
                  2 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                   HHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH CS
  Peripla_BP_3  29 rergfrqaleelglplnetvvaaddpaaaaaar 61 
                      g+++a++++g+ l   +v+add ++  +++
    KIR61084.1  80 FVTGAASAASAAGYHLVLSPVDADDLDGLRRLA 112
                   344566666666666666666666655555555 PP

  == domain 3  score: 94.9 bits;  conditional E-value: 1.8e-30
                   ..HHHHCS--EEEEEE...--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-S..EEEEESSCCHHHHHHHH CS
  Peripla_BP_3   1 vehLvelGhrriafig...gegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalP..tAviaasDelAlgvlqa 92 
                   v+hLv lGhrri++++    + + g   + + +++f+ a++e+g+++   ++ +   aa+++a+ a      +  + P  tAv+a ++++  g+l  
    KIR61084.1 169 VAHLVGLGHRRIVYVNhsaATIAEGYGPALRTRDAFAAAMAEHGVEPLMIPAEDS--AAGGRAALAT-----AFDRAPdlTAVLAMNERAVFGILGG 258
                   78**************887555666666777778899999******887766544..4455555544.....222245337**************** PP

                   HCCTT--TTTTEEEEBSS--SCC.CSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  93 lreaglrvPedlsvigfddsela.alssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   l+ +gl+vP+d+sv++   s+   +l++P+lT++  p   lGr a+e+ll+ le + ap +q+llp++l +R+S+
    KIR61084.1 259 LAGRGLTVPDDVSVVSMVTSPQVaELATPALTAMTSPGSALGRIAVEALLRHLELDSAPIHQELLPCTLEVRGSS 333
                   ****************77788878*************************************************96 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.4     3e-22   1.1e-18       1      45 [.       3      47 ..       3      48 .. 0.99
   2 ?   -0.6   0.0      0.32   1.2e+03      30      42 ..     200     212 ..     198     215 .. 0.86

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 3e-22
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-T CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiP 45
                t++DVArlA VS++TVS+vL +++ +s++tr++V aam+el+Y+P
  KIR61084.1  3 TMHDVARLARVSVSTVSYVLTGARPISQATRDKVRAAMAELDYQP 47
                8*******************************************9 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHTT CS
        LacI  30 trerVeaameeln 42 
                 tr+  +aam+e++
  KIR61084.1 200 TRDAFAAAMAEHG 212
                 899999*****97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.1   1.6e-19   5.6e-16      19     259 ..      80     311 ..      59     328 .. 0.79

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 1.6e-19
                   HHHHHHHHHHHHTEEEEEEE-SSHHHHHHHHHHHHHTT.-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EEEE-HHHHHHHHHHHHH CS
  Peripla_BP_1  19 lvkgitkaakehgvdvlllaageeedlakaidllkakg.idgliiatsdtsfdditakaesgipvialedaidapdgvPcvipddtqageestqkLi 114
                    v g+  aa++ g+ ++l +++  +d +  ++ l++++  dg ++   + + d++    e+g+p +++++++d   ++  v  d  +    +  +L+
    KIR61084.1  80 FVTGAASAASAAGYHLVLSPVD--ADDLDGLRRLASQRmLDGALLMEVQLDDDRVAVLREAGVPLVLIGRTGDTT-DLSYVDIDFDRTVRDAVAHLV 173
                   3455566777788887765554..4445556655555527******999998899999999************99.8988888877777899***** PP

                   HHHHHHTG.....EEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHHHHHHHHHHTT.-- CS
  Peripla_BP_1 115 aeghkrpi.....allegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaalGavlalkkeGrlk 206
                     gh+r i         + e  + a + ++ f aa+ae+G    ++ +    ++  +++ al   + + P++ a+ a+n++a++G+  +l ++G l 
    KIR61084.1 174 GLGHRR-IvyvnhSAATIAEGYGPALRTRDAFAAAMAEHGV---EPLMIPAEDSAAGGRAALATAFDRAPDLTAVLAMNERAVFGILGGLAGRG-LT 265
                   ******.745554333444444556778889**********...99999999******************************************.** PP

                   GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH CS
  Peripla_BP_1 207 ikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqki 259
                    +++v     svv+    + +q+  l  + l+   +p + lGr a + +l   
    KIR61084.1 266 VPDDV-----SVVS--MVTSPQVAELATPALTAMTSPGSALGRIAVEALLRHL 311
                   *****.....5555..5566***********************9999988765 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.2   4.2e-06     0.015      18      49 ..       5      38 ..       2      52 .. 0.74
   2 ?   -2.5   0.3       1.8   6.6e+03      48      63 ..     229     244 ..     228     245 .. 0.83
   3 ?   -0.4   0.0      0.41   1.5e+03      46      59 ..     303     316 ..     292     320 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.2e-06
      HTH_31 18 eevAerlgvsestlsrlEqGrrgrp...spavlea 49
                 +vA++++vs+st+s + +G+r+     +++ ++a
  KIR61084.1  5 HDVARLARVSVSTVSYVLTGARP-IsqaTRDKVRA 38
                68********************7.62333444444 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.8
      HTH_31  48 ealaralgldpaerae 63 
                 +ala+a++  p+++a 
  KIR61084.1 229 AALATAFDRAPDLTAV 244
                 6899999999999886 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.41
      HTH_31  46 vlealaralgldpa 59 
                 ++eal+r l ld a
  KIR61084.1 303 AVEALLRHLELDSA 316
                 799******99976 PP

>> HTH_53  Zap  helix turn helix N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1    0.0079        28      16      42 ..     115     140 ..     113     155 .. 0.84
   2 ?   -3.5   0.2       2.5   8.9e+03      12      20 ..     224     232 ..     224     233 .. 0.84
   3 ?    4.7   0.0    0.0064        23      15      37 ..     300     322 ..     297     326 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0079
      HTH_53  16 rmaLeeLlgeveLseaqLkevLeeAGp 42 
                 rm   +Ll ev+L + ++ +vL+eAG 
  KIR61084.1 115 RMLDGALLMEVQLDDDRV-AVLREAGV 140
                 677789*********997.69****96 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.5
      HTH_53  12 AhGGrmaLe 20 
                 A GGr+aL+
  KIR61084.1 224 AAGGRAALA 232
                 789**9996 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0064
      HTH_53  15 GrmaLeeLlgeveLseaqLkevL 37 
                 Gr+a e+Ll+++eL  a + + L
  KIR61084.1 300 GRIAVEALLRHLELDSAPIHQEL 322
                 9*************999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2665.26
//
Query:       KIR61085.1  [L=269]
Description: metal-dependent hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-32  110.1   3.8    1.3e-30  105.9   3.8    2.0  1  YdjM      LexA-binding, inner membrane-associated putative hy
  ------ inclusion threshold ------
       0.07   13.3   2.9        2.4    8.3   0.0    3.0  3  DUF2371   Uncharacterised conserved protein (DUF2371)
       0.27   11.1  11.6       0.07   13.0   6.5    2.3  2  DUF1275   Protein of unknown function (DUF1275)


Domain annotation for each model (and alignments):
>> YdjM  LexA-binding, inner membrane-associated putative hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   3.8   2.2e-34   1.3e-30       1     164 [.       1     251 [.       1     259 [. 0.88

  Alignments for each domain:
  == domain 1  score: 105.9 bits;  conditional E-value: 2.2e-34
        YdjM   1 MdgltHallGaalglalaallgaake........avllavavlgAllPDiD........hpsstlgrklgllskklak..................... 62 
                 M+g +Hal+Gaa++l   + l + ++        av +av + gAl+PD+D         + +t++r++g +s ++a+                     
  KIR61085.1   1 MMGPSHALSGAAVWLTGSWALDQFADyhqsplalAVGTAVCAGGALFPDLDlsgkvtrnQGGATVARTFGVVSLFVAEvmekislgvyyatklskdprr 99 
                 9********************9987799**99877778888888*******777777777777777777777777777********************* PP

        YdjM  63 lvgHRgftHSllflallalvlllllrlfgrsa..................................................lrlglllllgvlsHlll 111
                 + gHR++tH+++f +l++++ ++l++ +g++a                                                    +gl++ +g+++H+l+
  KIR61085.1 100 NNGHRTLTHTIPFTVLVGWGTTALCAAYGKWAvvgilffmfglalrglfdrwaeragwvivtlasaaaawytfanlpgdrgyPLIGLAVGVGCFVHILG 198
                 *******************************************************************************9987788889999******* PP

        YdjM 112 DlltkyGvpllwPfskkkvrlsllfiiidplltllsrrglvalelvllvlylv 164
                 D++t++Gvp+lwP+  k++ + ++  +++  l++ s+ ++v+l  vl ++ ++
  KIR61085.1 199 DMITRAGVPILWPIPIKRRMWTMVGLPNSIALRTGSKTEVVVLRGVLTAISVL 251
                 ***************99999999999776644444666666566666554433 PP

>> DUF2371  Uncharacterised conserved protein (DUF2371)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0004       2.4      24      58 ..     111     145 ..      90     168 .. 0.79
   2 ?   -1.8   0.4      0.53   3.2e+03     110     123 ..     186     199 ..     182     204 .. 0.76
   3 ?    4.0   0.1    0.0085        51      21      43 ..     232     254 ..     224     262 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0004
     DUF2371  24 kadvvvvkGklkLlsvsglvlllGllvllvGiama 58 
                    v+v  G   L++++g  +++G+l  + G+a+ 
  KIR61085.1 111 PFTVLVGWGTTALCAAYGKWAVVGILFFMFGLALR 145
                 5568888999**********************985 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.53
     DUF2371 110 limGiGiflfiCan 123
                 l +G+G f+ i + 
  KIR61085.1 186 LAVGVGCFVHILGD 199
                 67899999988765 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0085
     DUF2371  21 kkrkadvvvvkGklkLlsvsglv 43 
                 +  k++vvv++G l  +sv + v
  KIR61085.1 232 TGSKTEVVVLRGVLTAISVLAAV 254
                 56799*******99988875443 PP

>> DUF1275  Protein of unknown function (DUF1275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.08   4.8e+02      55      95 ..      12      49 ..       4      91 .. 0.64
   2 ?   13.0   6.5   1.2e-05      0.07      45     113 ..     126     193 ..     111     261 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.08
     DUF1275 55 laFvlGaalagllarrggrrrrlvllleallllaaallvpa 95
                +++++G+++  ++a++  ++  l+l++ +++ +  al+ p 
  KIR61085.1 12 AVWLTGSWALDQFADY--HQSPLALAVGTAVCAGGALF-PD 49
                5677788888888765..56666666666666555544.44 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.2e-05
     DUF1275  45 kaalaalvsllaFvlGaalagllarrggrrrrlvllleallllaaallvpagsvsp....lalallafamGlq 113
                 +  ++a+v +l+F++G al gl+ r+    r+ +++++ +  +aa + ++++   p     +l+ la+  G  
  KIR61085.1 126 AYGKWAVVGILFFMFGLALRGLFDRW--AERAGWVIVTLASAAAAWYTFANL---PgdrgYPLIGLAVGVGCF 193
                 4457899****************988..677888888755554444443322...234577777777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1935.87
//
Query:       KIR61086.1  [L=601]
Description: hypothetical protein TK50_25255 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-41  142.8   0.0    1.6e-41  142.4   0.0    1.1  1  Pkinase         Protein kinase domain
    8.7e-26   90.7   0.0    1.1e-25   90.5   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    3.1e-07   30.0   0.0    0.00062   19.2   0.0    2.1  2  Kinase-like     Kinase-like
     0.0012   18.9   0.7     0.0012   18.9   0.7    3.2  4  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.022   13.6   0.0      0.048   12.4   0.0    1.4  2  Pkinase_fungal  Fungal protein kinase
       0.11   11.8   0.0       0.18   11.1   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
       0.17   11.5   0.0       0.28   10.8   0.0    1.2  1  RIO1            RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.4   0.0   6.4e-45   1.6e-41       1     256 [.       6     255 ..       6     260 .. 0.87

  Alignments for each domain:
  == domain 1  score: 142.4 bits;  conditional E-value: 6.4e-45
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.....HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.....kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgs 94 
                 y+ l  +G+G++GkV +a+++  ++ vAvK++        +e      ++lrE +  ++l+hpn+vr+y+v+  + + +l++eyv+  +l+++l ++g 
  KIR61086.1   6 YRLLDLVGRGGMGKVWRARDEMLHRDVAVKQVVPPAVLAGDEldelrLRTLREARTTARLNHPNVVRVYDVVPVDGDPWLIMEYVPSRSLQHILDTSGP 104
                 5667899************************9988777766666777899************************************************* PP

                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHH CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyel 190
                 l++++a  i   +l++l+  H++g++HrD+Kp+N+L+ ++g +++tDFGla     +        + g+++++APE   e   s ++D+WslG +l   
  KIR61086.1 105 LPPRRAAAIGLALLAALRAAHQAGVLHRDVKPANVLVAHDGRVMLTDFGLAVFDGGDGVmtrPGLVLGSPQFVAPERAAEGISSVEADMWSLGATLHAA 203
                 ***************************************************9888877655555689***********98888**************** PP

                 HHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHH CS
     Pkinase 191 ltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltae 256
                 + gk p++ ++        l                 p +      ++ +l  ll++dp++R+  e
  KIR61086.1 204 VEGKSPYARSTAMA----TLSA----------LATRPPDPAPHAGPLRPVLVGLLRRDPRQRIDHE 255
                 ********333322....2222..........2335566666677777778888888888877655 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0   4.1e-29   1.1e-25       5     255 ..      10     257 ..       6     261 .. 0.86

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 4.1e-29
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST......TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlke......eateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkke 96 
                  + +G+G  GkV++++ +      + +VavK++        +  +e + + l+ea++  +l+hpn+v+++ v+  ++  ++++eyv++ +L++ L ++ 
   KIR61086.1  10 DLVGRGGMGKVWRARDE----MLHRDVAVKQVVPpavlagDELDELRLRTLREARTTARLNHPNVVRVYDVVPVDGDPWLIMEYVPSRSLQHILDTS- 102
                  678***********988....777889999874322222134444478899**********************99999*****************98. PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHH CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvl 194
                    +l  ++   + l + ++++  ++  ++Hrd+   NvL++++  v ++DfGLa     d  +++ +    + +++apE   e+  ++++D+Ws G +
   KIR61086.1 103 -GPLPPRRAAAIGLALLAALRAAHQAGVLHRDVKPANVLVAHDGRVMLTDFGLAVFDGGDGVMTRPGLVLGSPQFVAPERAAEGISSVEADMWSLGAT 199
                  .9*****************************************************9988999999999999*************************** PP

                  HHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 195 lwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfsel 255
                  l+  ++ g+spy++ +++ +l++l ++   ++p+     l  ++   +++dp++R + +e 
   KIR61086.1 200 LHAAVE-GKSPYARSTAMATLSALATRPPDPAPH--AGPLRPVLVGLLRRDPRQRIDHEET 257
                  **9998.*******99999999987765555555..6667788888888888888776665 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00035       0.9      18      96 ..      10      83 ..       5      99 .. 0.83
   2 !   19.2   0.0   2.4e-07   0.00062     161     258 ..     125     218 ..     109     251 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00035
  Kinase-like 18 ellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqelairllrgknpeqAk.dhlrlllpfdlvkiqkkk 96
                 +l+++g+ ++v++++d+    ++avk+ + p+  +  +l++l+  +l+ ++        A+ +h  ++  +d+v + + +
   KIR61086.1 10 DLVGRGGMGKVWRARDEMLHRDVAVKQVVPPAVLAGDELDELRLRTLREAR------TTARlNHPNVVRVYDVVPVDGDP 83
                 5789999************************************99999888......33332566777777777777666 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 2.4e-07
  Kinase-like 161 qakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlateeak 258
                  ++ g++h ++++ n+l  ++g++ml++f+  v +g  +v+      +  p +++        ++  ++ + d W lG++       k P    t  a 
   KIR61086.1 125 HQAGVLHRDVKPANVLVAHDGRVMLTDFGLAVFDGGDGVMTRPGLVLGSPQFVAPER----AAEGISSVEADMWSLGATLHAAVEGKSPYARSTAMAT 218
                  689************************************877778888999998844....48999************99887777777766666555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.4   4.9e-05      0.12      36     108 ..      54     127 ..      24     128 .. 0.76
   2 !   18.9   0.7   4.6e-07    0.0012     155     197 ..     116     156 ..     101     158 .. 0.74
   3 ?   -2.2   0.2       1.2   3.1e+03     127     127 ..     237     237 ..     183     278 .. 0.43
   4 ?   -2.0   0.3       1.1   2.8e+03     113     146 ..     501     531 ..     489     557 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.9e-05
                 HHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS......HHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  36 eirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr......klsaaqlpellealgeflaalhqv 108
                 ++ re++  + L+     v +v++      + g +++++eyvp rsl +      +l ++ + +++ al ++l+a hq+
  KIR61086.1  54 RTLREARTTARLNHP--NVVRVYD---VVPVDGDPWLIMEYVPSRSLQHildtsgPLPPRRAAAIGLALLAALRAAHQA 127
                 333333333333322..4556666...8899999*****************9999999999999999999999999997 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 4.6e-07
                 HHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 155 alaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 al+a l+++ ++++lH+D +p N+lv  +dgrv  + Df++a+
  KIR61086.1 116 ALLAALRAAHQAGVLHRDVKPANVLVA-HDGRV-MLTDFGLAV 156
                 34444444789****************.77887.688999986 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.2
                 H CS
         APH 127 r 127
                 r
  KIR61086.1 237 R 237
                 1 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1.1
                 TTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHH CS
         APH 113 lpladflaqdlellrqlesatarllaselldlle 146
                 +p +d++a  le+lr  e++  ++ a +l+  ++
  KIR61086.1 501 SPADDPAAAPLEQLRANERR--AKEAGALPR-YA 531
                 45555555555555555555..333333333.22 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.84   2.1e+03     327     338 ..      26      37 ..      11      63 .. 0.85
   2 ?   12.4   0.0   1.9e-05     0.048     318     382 ..     120     178 ..     115     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.84
  Pkinase_fungal 327 giLHrDiSenNi 338
                     ++LHrD++++ +
      KIR61086.1  26 EMLHRDVAVKQV 37 
                     578888887655 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 1.9e-05
  Pkinase_fungal 318 ghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFma 382
                     ++r  + +ag+LHrD+   N+l+      ++ + +L D+ la+  + d     ++   G ++F+a
      KIR61086.1 120 ALRAAH-QAGVLHRDVKPANVLVA-----HDGRVMLTDFGLAVFDGGDGVMTRPGLVLGSPQFVA 178
                     666777.9****************.....899**********98877666666677777777766 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     7e-05      0.18     102     166 ..      92     152 ..      83     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7e-05
         Kdo 102 aqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                  ++L+ +l +   l+ ++ +a+  a+ ++ +  h+agv H+d+ + n+l+  ++    +++l D+
  KIR61086.1  92 SRSLQHILDTSGPLPPRRAAAIGLALLAALRAAHQAGVLHRDVKPANVLVAHDG----RVMLTDF 152
                 567777777755577777777777888889999*******************99....9999998 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.28      54     153 ..      54     156 ..      44     158 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHTT.--S--EEEEETT.EEEEE--EETTEEGGBHHHCG.-..HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE CS
        RIO1  54 waekEfrnLkrleeag.vpvPkpielkrh.vlvmefigedgvaapklkdve.e..eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvvi 146
                  + +E r   rl++ + v+v +++ +  +  l+me++      ++++ d++     + a+ +   +l+++r++  +ag+ H D+   Nvlv +d +v++
  KIR61086.1  54 RTLREARTTARLNHPNvVRVYDVVPVDGDpWLIMEYVP--SRSLQHILDTSgPlpPRRAAAIGLALLAALRAAH-QAGVLHRDVKPANVLVAHDgRVML 149
                 56677777777776665777777777654379*****9..6677777777743567788888888888777666.****************99989999 PP

                 --GTTEE CS
        RIO1 147 IDvsQav 153
                  D++ av
  KIR61086.1 150 TDFGLAV 156
                 9998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 3925.70
//
Query:       KIR61087.1  [L=443]
Description: glycosyl transferase family 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-41  139.8   0.0      9e-41  139.3   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    7.8e-33  113.9   5.7    7.8e-33  113.9   5.7    2.3  2  Glyco_transf_4   Glycosyltransferase Family 4
    7.8e-30  104.0   1.1    2.7e-29  102.3   0.0    2.3  2  Glyco_trans_1_4  Glycosyl transferases group 1
      2e-28   99.8  28.2      3e-27   96.0  12.0    2.5  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    1.8e-18   67.1  10.8    1.4e-17   64.2   5.7    2.8  2  Glyco_transf_5   Starch synthase catalytic domain
    4.6e-12   46.2   0.0    2.9e-11   43.6   0.0    2.3  2  Glyco_trans_1_2  Glycosyl transferases group 1
    8.6e-06   25.8   0.0    0.00012   22.1   0.0    2.4  3  Glyco_trans_4_2  Glycosyl transferase 4-like


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   0.0   3.5e-44     9e-41       9     171 ..     222     383 ..     215     384 .. 0.96

  Alignments for each domain:
  == domain 1  score: 139.3 bits;  conditional E-value: 3.5e-44
                      TTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESS CS
  Glycos_transf_1   9 lgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsis 102
                       +++++ +++ + grl++eKgv++l +a++ l+++ +p +++viaG+g++++el ++a+ l+l+d+v+f g+++ ++l+++l + d++v+ps +
       KIR61087.1 222 ARFAGDGPLVGYAGRLVYEKGVQHLMHAVPYLRER-HPGLRVVIAGDGPYRQELVEQAHRLHLGDTVRFAGFLDSTQLPAMLAATDATVVPSLY 314
                      56788999************************998.********************************************************** PP

                      BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHHH CS
  Glycos_transf_1 103 EgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenark 171
                      E+fG+v+lEA aag p  +  +gg+ae+v++g+tG+ ++  +++ala a+++l+ de  ++r  ++ar 
       KIR61087.1 315 EPFGMVALEAAAAGAPLAVASTGGLAEIVEPGVTGVTFPHSDPDALAGAVDRLIGDEVFARRVARRART 383
                      *********************************************************999999999885 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9   5.7     3e-36   7.8e-33       1     168 [.      30     207 ..      30     209 .. 0.83
   2 ?    0.8   0.1      0.17   4.3e+02      12      99 ..     250     331 ..     242     336 .. 0.56

  Alignments for each domain:
  == domain 1  score: 113.9 bits;  conditional E-value: 3e-36
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeev.......elvvrvprvplpllkrllrslaflrrlrrllkre....kpDvvHahspaal 84 
                     vGG +rhv+ L+ aLa++GheVtvvt++ dg++ ee        +   +++++pl     l +++af   l r++ r      +Dv+Hah++  +
      KIR61087.1  30 VGGLGRHVHALSVALAAAGHEVTVVTRHADGAPLEEYadgvrvlRAAEDPVAFPLATGSLLAWTMAFNHTLTRAALRAtesgSYDVIHAHDWLVA 124
                     7*********************************999999877655555555555555555555555444433333333666*********9998 PP

  Glyco_transf_4  85 gaallalrrrlgiplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDl 168
                       a   l+ +l++plV+t+H +++ r+ ++  +  +r ++ +e ++   + rvia+S +++d++ ++++vp++++ V+ nGvD 
      KIR61087.1 125 HTAIT-LAEHLDLPLVTTIHATEAGRHQGWLPQEMNRTIHGVEHWISGESTRVIACSGYMRDQIGRLFDVPAARVDVVANGVDD 207
                     77755.4556*************999999999***************************************************6 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.17
  Glyco_transf_4  12 araLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrlgipl 99 
                     + +L++r    +vv  gd++  +e     v+   + ++++  +   +  + +l ++l + +  vv + +++++++al a++   g+pl
      KIR61087.1 250 VPYLRERHPGLRVVIAGDGPYRQEL----VEQAHRLHLGDTVRFAGFLDSTQLPAMLAATDATVVPSLYEPFGMVALEAAA--AGAPL 331
                     5556665333333333322222222....3344444444555555566677888888888888887777777777776666..57776 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.76   1.9e+03      87     131 ..      43      89 ..      36      91 .. 0.65
   2 !  102.3   0.0     1e-32   2.7e-29       2     134 .]     229     370 ..     228     370 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.76
                      HHHHHHTT-EEEE-TGGG..TTT--.TTSSEE--TT-HHHHHHHHHHH CS
  Glyco_trans_1_4  87 llEamaaglpvVatdvgg..iaevv.gengllvppgdpealaeailrL 131
                      +l a+ +++ vV+  + g  ++e+  g+  +l +++dp a+  a   L
       KIR61087.1  43 ALAAAGHEVTVVTRHADGapLEEYAdGVR-VLRAAEDPVAFPLATGSL 89 
                      67788888888888887633344444433.566777888886666555 PP

  == domain 2  score: 102.3 bits;  conditional E-value: 1e-32
                      EEEEEES---GG.GTHHHHHHHHHHHH.HH..EEEEEES---...HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--..---SHH CS
  Glyco_trans_1_4   2 pvilfvGrleenvkgvdllleavpllrkkd..vrlvivGdgp.rpeeleelaa..gleerveftGfv..edlaellaaadvfvaPs..egfglk 86 
                      p +++ Grl+  +kgv+ l++avp lr+++  +r+vi+Gdgp r +el e+a+  +l ++v+f+Gf+  ++l+++laa d +v+Ps  e fg++
       KIR61087.1 229 PLVGYAGRLV-YEKGVQHLMHAVPYLRERHpgLRVVIAGDGPyR-QELVEQAHrlHLGDTVRFAGFLdsTQLPAMLAATDATVVPSlyEPFGMV 320
                      6799*****5.45**************99559**********66.58887886588889********7666*********************** PP

                      HHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  87 llEamaaglpvVatdvggiaevv..gengllvppgdpealaeailrLled 134
                      +lEa+aag p  + ++gg+ae+v  g++g+ +p  dp+ala a+ rL+ d
       KIR61087.1 321 ALEAAAAGAPLAVASTGGLAEIVepGVTGVTFPHSDPDALAGAVDRLIGD 370
                      ***********999999******************************976 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0  12.0   1.2e-30     3e-27       1     160 []      31     204 ..      31     204 .. 0.81
   2 !   10.2   7.3    0.0003      0.78      14     135 ..     253     386 ..     242     407 .. 0.65

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 1.2e-30
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgapeleedgvrvhrlpvprrpsplad...laalral.....rrll.rqrrerpdvvhahspt.a 84 
                      gG gr+v++l+ aLaa+GheVtv+t+++++++ e+ +dgvrv r    +   pla+   la++ a+     r++l + ++  +dv+hah+++ a
       KIR61087.1  31 GGLGRHVHALSVALAAAGHEVTVVTRHADGAPLEEYADGVRVLRAAEDPVAFPLATgslLAWTMAFnhtltRAALrATESGSYDVIHAHDWLvA 124
                      8*****************************************976533332223322223344333333344444566************9856 PP

  Glyco_trans_4_4  85 glaarlarrrrgiplvvtlhglllrrgsgavrrly.ral...errllrradavlvvseaeaeelra.lgvpadrvvvvpng 160
                        a+ la    ++plv t+h+++  r++g++++ + r++   e+++     +v++ s ++++++ + + vpa+rv+vv ng
       KIR61087.1 125 HTAITLAE-HLDLPLVTTIHATEAGRHQGWLPQEMnRTIhgvEHWISGESTRVIACSGYMRDQIGRlFDVPAARVDVVANG 204
                      77777777.99**********9999999999998864445669***********************888***********8 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0003
  Glyco_trans_4_4  14 LaarGheVtvltpapapgapeleedgvrvhrlpvprrpspladlaalralrrllrqrrerpdvvhahsptaglaarlarrrrgiplvvtlh... 104
                      L++r   ++v+++++ p ++el+e   + hrl ++ +  ++a    +++l ++l  ++    vv + + + g++a+ a+ ++g+pl v      
       KIR61087.1 253 LRERHPGLRVVIAGDGPYRQELVE---QAHRLHLGDTV-RFAGFLDSTQLPAML--AATDATVVPSLYEPFGMVALEAA-AAGAPLAVASTggl 339
                      444422455555544444444444...34555555554.356666779999999..9***********99*********.9*****99885444 PP

  Glyco_trans_4_4 105 ...............glllrrgsgavrrly..ralerrllrradavlv 135
                                     + +++  +gav rl+    + rr++rra++ ++
       KIR61087.1 340 aeivepgvtgvtfphS-DPDALAGAVDRLIgdEVFARRVARRARTMVS 386
                      4444444443322212.2334478888888866668888888877654 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   5.7   5.6e-21   1.4e-17       1     189 [.      17     166 ..      17     190 .. 0.74
   2 ?   -1.3   0.2      0.56   1.4e+03      10      22 ..     329     343 ..     319     345 .. 0.68

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 5.6e-21
  Glyco_transf_5   1 kilfvasEvaplaktGGLadvvgaLpkaLaklghdvrvilPrygaikeekkeleevaelskaaedevevevekvkvaklkkdgvdvyf.ldnpef 94 
                     ++l++++E++p + +GGL+++v+aL+ aLa++gh+v+v++ + +  + e+                             ++dgv+v+   ++p  
      KIR61087.1  17 RVLILSWEYPP-VLVGGLGRHVHALSVALAAAGHEVTVVTRHADGAPLEE-----------------------------YADGVRVLRaAEDPVA 81 
                     79*********.****************************8884444432.............................4468888886666666 PP

  Glyco_transf_5  95 fdreglYgdkgedyednaerfalfsraalelleklgwkpdvihahDWhtalvpallkelykerglfkkiktvftiHNla...yqgrfpkdel.aa 185
                     f        +g+  + +      + raal++ e      dvihahDW  a+ ++ l+e+        + ++v tiH ++   +qg++p++    +
      KIR61087.1  82 FPLA-----TGSLLAWTMAFNHTLTRAALRATESG--SYDVIHAHDWLVAHTAITLAEHL-------DLPLVTTIHATEagrHQGWLPQEMNrTI 162
                     6321.....13333445555557888888888883..69*******************95.......4*********762225666666655444 PP

  Glyco_transf_5 186 lglp 189
                     +g++
      KIR61087.1 163 HGVE 166
                     5555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.56
  Glyco_transf_5  10 apl..aktGGLadvv 22 
                     apl  a tGGLa++v
      KIR61087.1 329 APLavASTGGLAEIV 343
                     5556699*****987 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         2   5.2e+03      13      28 ..     188     203 ..     176     210 .. 0.79
   2 !   43.6   0.0   1.1e-14   2.9e-11       3      88 ..     309     396 ..     305     399 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2
  Glyco_trans_1_2  13 lrlfEaaacGafaltd 28 
                      +rlf+++a+ + ++++
       KIR61087.1 188 GRLFDVPAARVDVVAN 203
                      5899999998877775 PP

  == domain 2  score: 43.6 bits;  conditional E-value: 1.1e-14
  Glyco_trans_1_2   3 LnpsrsespnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydhrae 88 
                      + ps +e + ++ +Eaaa+Ga++ + ++ gl+e+++pg ++++f   d++ la ++++l+ ++  +r++a++ar  v +++ ++  a+
       KIR61087.1 309 VVPSLYEPFGMVALEAAAAGAPLAVASTGGLAEIVEPGVTGVTFPhsDPDALAGAVDRLIGDEVFARRVARRARTMVSERYGWATIAA 396
                      56888999*************999999********************************************************98775 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.6e-08   0.00012      12     110 ..      36     146 ..      28     174 .. 0.75
   2 ?    0.6   0.0       0.2   5.2e+02      10      45 ..     243     279 ..     237     339 .. 0.74
   3 ?   -3.5   0.0       3.9   9.9e+03      76      88 ..     392     404 ..     386     409 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.6e-08
  Glyco_trans_4_2  12 htlrlakeLakrgyeVhvitp.kkgakdeleaegihvhrl.kvd.rkgpleylka............fklkklikkikPDvvhahyakpygllg 90 
                      h+  l  +La++g+eV+v+t+  +ga  e+ a+g++v r  + d +++pl + ++            ++  +  +  ++Dv+hah    ++  +
       KIR61087.1  36 HVHALSVALAAAGHEVTVVTRhADGAPLEEYADGVRVLRAaE-DpVAFPLATGSLlawtmafnhtltRAALRATESGSYDVIHAHDWL-VAHTA 127
                      77788999*************6666699************54.44555333322112344566555456677889999********55.55666 PP

  Glyco_trans_4_2  91 slaarlsgvipvvlsvwGld 110
                        +a  +   p+v++++ + 
       KIR61087.1 128 ITLAEHLD-LPLVTTIHATE 146
                      66677776.99999999765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.2
  Glyco_trans_4_2  10 svhtlrlakeLakrgyeVhvitp.kkgakdeleaegi 45 
                        h+++ + +L++r+    v++  ++++ +el+++  
       KIR61087.1 243 VQHLMHAVPYLRERHPGLRVVIAgDGPYRQELVEQAH 279
                      5699999999****77777777734444666655433 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3.9
  Glyco_trans_4_2  76 Dvvhahyakpygl 88 
                       ++ ah+a++y+ 
       KIR61087.1 392 ATIAAHTASSYAA 404
                      5788999999853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2822.46
//
Query:       KIR61088.1  [L=647]
Description: amylo-alpha-1,6-glucosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-91  305.4   0.0    7.3e-91  304.9   0.0    1.1  1  GDE_C     Amylo-alpha-1,6-glucosidase
    7.7e-54  182.4   0.0    1.3e-53  181.7   0.0    1.4  1  GDE_N     Glycogen debranching enzyme N terminal


Domain annotation for each model (and alignments):
>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.9   0.0   8.2e-95   7.3e-91       7     383 .]     284     641 ..     270     641 .. 0.93

  Alignments for each domain:
  == domain 1  score: 304.9 bits;  conditional E-value: 8.2e-95
       GDE_C   7 lvrrkseslkeeekgvsliAGlpwFsdWGRDtfIaLsGllLvtgrfeeAreilltFaktlrhGliPNlldegqealyntvdaslwlieaiekYleyagd 105
                 +v        ++ +g++++AG+pwF  W RDt+ + +Gl L  +r +e re+l+++a tl++G++ N+ d g    yntvda+lw+++a+++ ++++gd
  KIR61088.1 284 VV--------RTAAGPDVVAGYPWFGAWSRDTMTSYEGLFLCANRADEGRELLRAYAATLSEGMLANTADTG-RVEYNTVDAALWFLHAVSRHVTVTGD 373
                 44........456899****************************************************9766.689*********************** PP

       GDE_C 106 aeilrriypvlqeilqkyvqGtkykigldeedglisa.gerlnqlTWmDakvkgepvtPRdGkaveinaLwyaaLkileelaekalgeakkssykelae 203
                 +++  + +p l+ i+++y++Gt+y i +d++dgl+++ g ++ +lTWmDa+v g pvtPR+Gk+veinaLw + L  l+el e a g+  + +  +l +
  KIR61088.1 374 TDLGDELLPALRGIVDAYLAGTRYGIAVDPADGLVTQgGTPGTALTWMDARVYGVPVTPRTGKPVEINALWVNGLAGLAELTELAGGD--AAELWRLHA 470
                 **********************************98625789*****************************************66666..888889999 PP

       GDE_C 204 kikesfekkF.....wdeaaaavakreilaDvlksseekdlslRpNflialslapellseekakkvlekaeeeLltplGlktLdpedpeYkgnYdgsed 297
                 ++ +sf ++F     w   +++v  ++ ++ + ++  ++d  lRpN+l+a sl++++l++++    l+++   LltplG ++L+p++p Y+g+++g   
  KIR61088.1 471 RATASFAARFpspvgWL--HDVVDAPAPAYPLGGAPFHDDDLLRPNQLLAWSLPYAPLEPDE--PTLRRVAAGLLTPLGPRSLAPDQPGYTGRHRGGPA 565
                 **********6664444..5888999999999999999*********************998..79********************************* PP

       GDE_C 298 srdaaYHqGtvWvwllgsyveallkfgeklgkskealeevkalLeglekhleeaglgslsElfdgdaellpkgciaQAWSvaellr 383
                 +rd  YHqGtvW+wllg yv+a+ +++            v+ l+ g+e+hl+e glgs+sE  dg a+++++gc++QAWSvae+lr
  KIR61088.1 566 ERDGGYHQGTVWPWLLGPYVDAARRAKLP----------VDDLFVGVEAHLTEYGLGSVSETADGAAPHAATGCPFQAWSVAEVLR 641
                 **********************9887764..........778999999************************************97 PP

>> GDE_N  Glycogen debranching enzyme N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.7   0.0   1.4e-57   1.3e-53       1     212 [.      20     226 ..      20     233 .. 0.91

  Alignments for each domain:
  == domain 1  score: 181.7 bits;  conditional E-value: 1.4e-57
       GDE_N   1 REwllTNglGGYasgtvagantRryhGlLvaalnppsgRtlllskldeslev.sgkvfeLstney.pgeiepeGyeyLesFele.pvptwtyrvgdvll 96 
                 REwl+ +glGGYa+gtv+g++tRryhGlLv+a + p +R + l +ld  +++ sg++ +L+ +e+ +g ++p+G+e+Le+F+l  ++p+w++r+gdv++
  KIR61088.1  20 REWLVPDGLGGYAMGTVSGLRTRRYHGLLVVAGHTPASRNVGLVSLDPAVVLpSGARLRLGAHEWsSGDVDPRGFELLERFDLTdGLPRWRWRIGDVVI 118
                 9*************************************************999************8888****************************** PP

       GDE_N  97 ekqivmpkgentvliaYrlenadepatLrlrpllafRdfheltkanellqksqe.eglveiqaseaepslrlqaskegefqeepvwyynveypeEaerG 194
                 e++++m +g+ +v++ +rl ++  p++L l + +++Rd h + +a+  + + +  +         a  +  +++  + ++++e++w+ +v+++eEa rG
  KIR61088.1 119 ERELAMAYGRSCVAVVHRLVSGG-PVRLDLSAACTWRDAHGERRADGPAPRVEPvD-------GGAVVEGAFRLA-GPDWTPEGQWWLGVHHREEAARG 208
                 *********************77.********************997777775542.......223344455555.789******************** PP

       GDE_N 195 lddredlyspgyfevelk 212
                 l + +d +++g+f+  l+
  KIR61088.1 209 LHPDDDVWHAGRFSGALE 226
                 *************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.47
# Mc/sec: 4148.92
//
Query:       KIR61089.1  [L=914]
Description: glucosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-10   38.5   0.0      2e-06   26.9   0.0    4.1  2  Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domai


Domain annotation for each model (and alignments):
>> Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.1e-10     2e-06     254     459 ..     589     849 ..     574     853 .. 0.66
   2 !    2.4   0.0    0.0028        51     463     487 ..     876     900 ..     864     904 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.1e-10
                     HHHHHHHHHHHHHHHHHHHTT-HHHH.....HHHHHHHHHHHHH.HHHTTEETTTTEE-EEE..E-T............................ CS
  Glyco_hydro_63 254 DlrsWvalaakslksiaellgeeeek.....ekyaktekelsen.leklhwseeekayaDlg..vhtekvklkkkev......egqk........ 326
                     D   W+a+ a  l +ia +l e++++      k+ ++ +++  +  ++  w++e+  + D+    + ++v lk ++v                  
      KIR61089.1 589 DGTGWMAMYALNLLDIAVVLAEQDRTwvdtaTKFFEHFAYIAAAaYDQGLWDDEDAFFYDVLrlADGSQVPLKVRSVvgllplA--Attrltart 681
                     667899999999999999999888765554466777888887777899999999999999862246678889888885555431..144455444 PP

                     ...............TTSS-EEEE---BHHHHHH..HHTT-S-T.T-THHHHHHHHHH-TTTTEETTEEBSB-TT..STTTT-............ CS
  Glyco_hydro_63 327 ........kelvrvveeepelqlvealGYvslfP..lllkllda.dsekleklldlikdpeelwsdyGlrslskk..sslygk...........r 397
                             ++l    +++pe  + + +G   + P     +ll++   ek+ +ll+ + d+ee+ s+yGlr ls+   ++ +             +
      KIR61089.1 682 lrrlpelgARLRWFLTHRPE--YADVIGARRIGPdgRQQRLLTMvGPEKIVRLLARMLDTEEFLSEYGLRTLSRAhlDKPFAVtlggqefsvgyE 774
                     43333322222222223333..33334444444422344555554667999**********************9733344432011111111111 PP

                     ..........TT-SSSS-B-HHHHHHHHHHHHHH-.......--SS-.--HHHHHHHHHHHHHHHHHHHHHHHTS CS
  Glyco_hydro_63 398 nteh......denYWrgpiWininylilsalkhys.......kvegpykekakeiykeLrsnlvnnivkqyketG 459
                      +e        ++ WrgpiW+  n+l++sal+ y+       +ve p+++ +k++ +e+  +l   +++ +++ G
      KIR61089.1 775 PAEStsglfgGNSNWRGPIWMPTNFLLISALRDYAaffgddlQVEYPTRSGVKRTLDEIADDLSTRLISLFTRDG 849
                     12211122224678********************98888887788888999999999999999988888888877 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.0028
                     SEE-TTT--EESSSS-TTGGGGHHH CS
  Glyco_hydro_63 463 eqYddktGkgkgakeFtGWtslvvl 487
                     e +   +G g ga + tGWt+lv  
      KIR61089.1 876 EYFHGDNGAGLGAWHQTGWTALVAD 900
                     6677889***************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (914 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 6216.20
//
Query:       KIR61090.1  [L=236]
Description: hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-11   42.2   0.0    2.7e-10   40.6   0.0    1.7  1  HAD_2           Haloacid dehalogenase-like hydrolase
      5e-10   40.0   0.0    7.5e-10   39.4   0.0    1.3  1  Hydrolase       haloacid dehalogenase-like hydrolase
    5.3e-06   27.0   0.7    7.9e-06   26.4   0.7    1.3  1  HAD             haloacid dehalogenase-like hydrolase
    9.1e-06   25.7   0.0    2.5e-05   24.3   0.0    1.8  1  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
      0.067   13.3   0.1        6.6    6.9   0.0    2.3  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase
       0.14   11.7   0.0       0.22   11.0   0.0    1.3  1  IL10            Interleukin 10


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   8.9e-14   2.7e-10       2     176 ..      15     201 ..      14     203 .. 0.76

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 8.9e-14
       HAD_2   2 iFDlDgTlldteeliiqafnelleey..................glselseeelrkliglslrellrklgeseeeeekieellrkyneekkkkevkpyd 82 
                 +FD D+Tl   + +   ++   l                       +     + +k++  sl e l++l ++      + e+ +   e + +++v++++
  KIR61090.1  15 VFDADDTLWENNVVFERVIDDFLGWLdhptldraqirailddieRANAAVHGYGSKVFLRSLGECLERLRQRPASAAERREI-DALAEALVNHQVELMP 112
                 7888888888888877777777776644455555555555555433344455555555555555666666655544455555.77888888889***** PP

       HAD_2  83 gvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsp.tDieaakkagikvi 176
                 gv  +L+ L +++++l + T ++re++++kl++ g+ ++F+   +      +K + ++++ ++ + ++++  ++++G sp +Di  a++ag+ ++
  KIR61090.1 113 GVAATLDAL-AERHRLLLLTKGDREEQQRKLDASGLLHHFHAAHIVR----EK-NVDTYRWLVGEHGFDPGAAWMIGNSPkSDILPARAAGMWAV 201
                 *********.899***************************9765544....44.689**********************************9776 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   2.5e-13   7.5e-10       3     210 .]      13     197 ..      11     197 .. 0.74

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 2.5e-13
                 EEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHH.HHCHHHHHHHHHHHHHHHHH.HHHHHETTTE..HHHHTHHHHHHHHHCHHHHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsaalalaaaletg.sehpigkalvaaakarsgal.tgfatfigrg..ayaigkpewltaldippdlgaaigsaqsqg 97 
                 ++vfD d TL++ + + e+vi+           +g  +hp   +   +  a+  ++   +a++ g g  ++++   e+l++l      +++  sa ++ 
  KIR61090.1  13 VLVFDADDTLWENNVVFERVIDDF---------LGwLDHPTLDRA--QIRAILDDIeRANAAVHGYGskVFLRSLGECLERL------RQRPASAAERR 94 
                 79************9999999999.........777788877665..33333333334445523444445555555555555......44444444444 PP

                 HHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  98 rtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvakpspegkvaaireLqgkpeevamV 196
                 ++ a      la+  + ++ +++p++a ++ +L ++  ++ llt +++e ++r ++  G   +++ +a+ i+  + +  + ++ ++ e + +p    m+
  KIR61090.1  95 EIDA------LAEALVNHQVELMPGVAATLDALAER-HRLLLLTKGDREEQQRKLDASG--LLHHFHAAHIVREKNV--DTYRWLVGEHGFDPGAAWMI 182
                 4444......55666666777*************99.55********************..5577777777775656..888999999999******** PP

                 ESSHH.HHHHHHHTT CS
                 xxxxx.xxxxxxxxx RF
   Hydrolase 197 GDgvn.DaaalaaAg 210
                 G ++  D+  ++aAg
  KIR61090.1 183 GNSPKsDILPARAAG 197
                 *************98 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.7   2.6e-09   7.9e-06       2     181 ..      15     186 ..      14     194 .. 0.71

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.6e-09
         HAD   2 lfDfDgTLldgdsle..lllrfllrrgaprlwralreklllal...........frellrldraglaelleallagls.eelaaelerfvaevirpkll 86 
                 +fD D TL+ ++  +  ++++fl++ + p l ra  +++l ++            + +lr+  + l++l ++  ++ +  e++a +e++v + ++  l+
  KIR61090.1  15 VFDADDTLWENNVVFerVIDDFLGWLDHPTLDRAQIRAILDDIeranaavhgygSKVFLRSLGECLERLRQRPASAAErREIDALAEALVNHQVE--LM 111
                 9**********99999*999999999999998888888777778997777777755555555556777777777777755555555555533333..56 PP

         HAD  87 dpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDsp 181
                  pg+ + l+ ++a+ +r+ +++ g r+  +++l++ g    l +      ++ + + +++k+v      ++l       ++g d+   + +G+sp
  KIR61090.1 112 -PGVAATLD-ALAERHRLLLLTKGDREEQQRKLDASG----LLH------HFHAAHIVREKNVDT---YRWLVG-----EHGFDPGAAWMIGNSP 186
                 .********.66899**********************....555......444443344444444...223333.....3455555567777776 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   8.3e-09   2.5e-05       8      48 ..     163     203 ..     148     220 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 8.3e-09
                     HHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEE CS
  Hydrolase_like   8 emydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLV 48 
                      +y+  + ++g dp++ +miG ++++Di+ A++aG+  v++
      KIR61090.1 163 DTYRWLVGEHGFDPGAAWMIGNSPKSDILPARAAGMWAVFI 203
                     5899999999*************************988876 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.016        49       1      21 [.      14      34 ..      14      48 .. 0.83
   2 ?    6.9   0.0    0.0022       6.6      11      65 ..     106     158 ..     102     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.016
                 EEEESTTTSEETTEE-TTHHH CS
  Hydrolase_6  1 flfDidGvLwrgdkaipgaae 21
                 ++fD d +Lw+++ +++ + +
   KIR61090.1 14 LVFDADDTLWENNVVFERVID 34
                 59***********99999864 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0022
                  ETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHHHHTT----GGGEEE CS
  Hydrolase_6  11 rgdkaipgaaealnalraagkpvvllTNnsskseeeyakkleklgvditeeqvvt 65 
                  ++ +++pg+a +l+al ++  +++llT +  + e++++ + + l +++++ ++v 
   KIR61090.1 106 HQVELMPGVAATLDALAER-HRLLLLTKGD-REEQQRKLDASGLLHHFHAAHIVR 158
                  567899**********988.6899999755.666888888888888888888875 PP

>> IL10  Interleukin 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.5e-05      0.22      51     118 ..      16      86 ..       9      94 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.5e-05
                 HCCC-SS.SS-SS-HHHHHHHHSTTHHHHHHH.HHHHHHHTHH.HHHHHHSGGGHHHHHHHHHHHHHHHHH CS
        IL10  51 fqkkdql.dnlllteslledfkgylgcqalse.miqfyleevm.pqaenhgpeikehvnslgeklktlrlr 118
                 f+  d l +n ++ e +++df g+l   +l    i+  l+++   +a  hg   k  + slge l  lr+r
  KIR61090.1  16 FDADDTLwENNVVFERVIDDFLGWLDHPTLDRaQIRAILDDIErANAAVHGYGSKVFLRSLGECLERLRQR 86 
                 4555555367788899**************8626999999985267899********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1560.63
//
Query:       KIR61091.1  [L=91]
Description: hypothetical protein TK50_25280 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 685.04
//
Query:       KIR61092.1  [L=143]
Description: hypothetical protein TK50_25285 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 997.24
//
Query:       KIR61093.1  [L=192]
Description: hypothetical protein TK50_25290 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-07   28.9   0.8      1e-05   25.4   0.8    1.9  1  DSBA      DSBA-like thioredoxin domain


Domain annotation for each model (and alignments):
>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.8   5.7e-10     1e-05       4     161 ..       5     133 ..       3     137 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 5.7e-10
                 EEEBTTBHHHHHHHHHHHHHHHHCCTEEEEEEE-SSSCHHHHCT.S.GGGSHHHHHHHHHHHHHHHHHHT....GGSSHHHHHHHHHHHHHHHHHHH.. CS
        DSBA   4 effDvlCPyCylgkerleklaarspdvkvvlrpfelagakkasgnvgpselpeklkylledlkrlaeaegiplrfpkdklknstraarlllaagaeg.. 100
                 +ffD  CP+ +  ++ l ++a ++ ++ v +r+f+la      g+                        ++p +f + + ++s ra rl+ a++aeg  
  KIR61093.1   5 FFFDPACPWTWRTSRWLVAVADAR-GLAVEWRAFSLAIL---NGG------------------------DVPPQFAEAM-AASGRALRLVEALRAEGrh 74 
                 9*****************999999.***********999...222........................3455555554.6999999999999999944 PP

                 .GHHHHHHHHHHHHHTSSS-TSSHHHHHHHHHHTTS.HHHHHHHHTSHHHHHHHHHHHHHHH CS
        DSBA 101 .laekvvrelfealwsegqaitddqellevaekaGldaeeldealeseavkeavrentaaaq 161
                   a +++ +l  + ++ g +++d+  +++++ +aGl  ++++ al++++  eavr+++a+a+
  KIR61093.1  75 dDAGRFYAALGGRTHDAGNPLSDK-LVDDAVAAAGL--AAAAPALDDDRWDEAVRRSHALAY 133
                 445555555556666667777777.59*********..789*****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1654.58
//
Query:       KIR61094.1  [L=426]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-25   89.9   4.9    3.9e-25   89.5   4.9    1.1  1  SBP_bac_1      Bacterial extracellular solute-binding protein
    1.7e-24   87.2   3.1    2.1e-24   86.8   3.1    1.1  1  SBP_bac_8      Bacterial extracellular solute-binding protein
     0.0079   16.6   1.4      0.017   15.6   1.4    1.5  1  K_channel_TID  Potassium channel Kv1.4 tandem inactivation do
  ------ inclusion threshold ------
       0.02   14.5   0.0       0.19   11.3   0.0    2.5  3  Big_3_3        Bacterial Ig-like domain (group 3)


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   4.9   8.6e-29   3.9e-25      40     314 ..      84     337 ..      74     338 .. 0.92

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 8.6e-29
                 HHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE.EE...ES.EEEEE.EEEEEEETTTHHCTTGGGS CS
   SBP_bac_1  40 kltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkilds.kv...ly.vPlya.argliYNkdlfekagldpp 132
                 +l  ++aaGd   Dv   d +w+ ++a+a++  + +     ++ +g           +l++ ld+ ++   ly  P ++ +++l+Y++dl+     d+p
  KIR61094.1  84 QLVRRLAAGDTGMDVLGLDVTWTQEFASADWIREWTGQDRTEAEEG-----------TLAGPLDTaRYqdkLYgAPKNTnVQLLWYRTDLVP----DAP 167
                 57889*****88899999************************9999...........9999***9888**********99************....778 PP

                 HBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT.HHCSHHHHSHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHH CS
   SBP_bac_1 133 wtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgg.gldnpegvtaatylvklyavanltkelkgkgaenkdgaaalalf 230
                 +tWd+ ++ a+ lk++gk + +++ +g++   + +++++la s+ggk  ++dg+ ++ + + vta+++l+        t + + ++ +n++++ ++  f
  KIR61094.1 168 KTWDDMIKQAQDLKAQGKPY-QVLTMGAQYEGLVVLYNTLAESAGGKILSDDGKqAVMDAGTVTALDQLRRFA-----TSGVTSPSFSNATEDPVRLEF 260
                 9*****************98.*******************************998666666666666666666.....99******************* PP

                 HTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE..EEEEEEEEBTTCSTHHHHHHHHHHHTSHHHH CS
   SBP_bac_1 231 eaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi..lgayglaipkgsknpeaAkkFldfllspeaq 314
                 ++G+ a+ +++++            a+ ++++++ +++ +a +P+++ ++p+   +g+ +la+++ s +p++ ++  + l ++++q
  KIR61094.1 261 QSGKGAFQVNWPFV---------YPALQEADPELAKKVRWARIPGIDADTPSKvtIGGVNLAVSAYSTHPAESFEAAKCLRNAKNQ 337
                 *************9.........99***********************************************99888888888877 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   3.1   4.7e-28   2.1e-24       2     277 ..      55     362 ..      54     367 .. 0.79

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 4.7e-28
                 HHHHHHHH-.T...EEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH....-HHHHHTT--TS.----EEEEE CS
   SBP_bac_8   2 lakefekkt.g...vkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnldd....ltdalaavgydgklygvPyase 92 
                 ++++++ +  g   +  +v + + +d   +l   laag++  +dv+  +  + +++a ++++ + +  d  +     l   l+++ y +klyg P +++
  KIR61094.1  55 VVDDCNTQAqGryrIAYRVLPRQADDQRVQLVRRLAAGDT-GMDVLGLDVTWTQEFASADWIREWTGQDRTEAeegtLAGPLDTARYQDKLYGAPKNTN 152
                 5666665544665555566677888888899999*****8.69***********************444333334655668888899899********* PP

                 EE-EEEEEHHHHHHS.---BHHHHHHHHHHHHHH-......SEGG---G...GGGGGTHH..ETTEE---H......HHH.HHHHHHHHHHHHTT-EE. CS
   SBP_bac_8  93 tpyvliynkdllekaedpktwdellaaakklkgkf......glpdpasg...wlqaalla..kdgksldddg....gkdglkealellkklkdngkty. 175
                   ++l y++dl+++a  pktwd++ + a++lk +       ++ ++ +g     + +l a  ++gk l+ddg     ++g++ al+ l+ +   g+t  
  KIR61094.1 153 V-QLLWYRTDLVPDA--PKTWDDMIKQAQDLKAQGkpyqvlTMGAQYEGlvvL-YNTL-AesAGGKILSDDGkqavMDAGTVTALDQLRRFATSGVTSp 246
                 7.9**********86..*******99999997444457744444444556532.3222.2457999999998888877888999999999999998555 PP

                 ...-S..--SS.TTTTTSBSEEEE-TTHHHHHH-TTT....SEEEE.--......S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH CS
   SBP_bac_8 176 ...dtgadavs.efanGevaftingswdiaaaqkagk....klgai.vp......kqgsfaggkglavpknaknedlaAldFlkwltspenqaalaekt 259
                    ++ +d v  ef++G+ af +n++  + a+q+a++    k++ + +p      ++++ +gg +lav++ ++++++ + + +k+l ++ nq+  a + 
  KIR61094.1 247 sfsNATEDPVRlEFQSGKGAFQVNWPFVYPALQEADPelakKVRWArIPgidadtPSKVTIGGVNLAVSAYSTHPAE-SFEAAKCLRNAKNQKFSAVND 344
                 555777888888*********************9987233355555667888776678******************7.***************9999** PP

                 ---BS-S-TTTHHHHHH- CS
   SBP_bac_8 260 gyipvnksaalspevkkd 277
                 g++p++  ++++pe +++
  KIR61094.1 345 GVPPTIERVYDDPEMAEA 362
                 *************98865 PP

>> K_channel_TID  Potassium channel Kv1.4 tandem inactivation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.4   3.8e-06     0.017      27      61 ..       5      40 ..       3      51 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.8e-06
  K_channel_TID 27 arererlahsraaaaaavaaaa.aaaeGeGGggGGs 61
                   ar r r a   aaaa a a  a  aa G+GG gG +
     KIR61094.1  5 ARHRRRPAARAAAAATALALVApLAACGSGGDGGTP 40
                   899999866556666666766657788999988865 PP

>> Big_3_3  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.8   8.1e+03      86     100 ..     144     158 ..     141     160 .. 0.86
   2 ?   11.3   0.0   4.3e-05      0.19      56     122 ..     223     282 ..     200     284 .. 0.80
   3 ?   -0.8   0.0      0.23     1e+03      24      64 ..     328     367 ..     316     392 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.8
     Big_3_3  86 lsGGpasDkVelswv 100
                 l G p + +V+l w+
  KIR61094.1 144 LYGAPKNTNVQLLWY 158
                 78999999****997 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.3e-05
     Big_3_3  56 isdgavvkglenlritladaldkskltsialsGGpasDkVelswveegkdvysleYPrlFPsleege 122
                 + d  +v  l++lr   ++ +++++ +       +++D V+l  +  gk+ +++++P ++P+l+e++
  KIR61094.1 223 VMDAGTVTALDQLRRFATSGVTSPSFSN------ATEDPVRLEFQ-SGKGAFQVNWPFVYPALQEAD 282
                 4566677777777777777777776654......799*****986.6*****************987 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.23
     Big_3_3  24 kdtfnnqvtksllstilvdntpPtvsi.segkkisdgavvkg 64 
                 ++   n  +++++   ++d  pPt++  +++ ++++   +k+
  KIR61094.1 328 AKCLRNAKNQKFS--AVNDGVPPTIERvYDDPEMAEAYPMKE 367
                 5555666666665..889999***975477777776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3001.58
//
Query:       KIR61095.1  [L=327]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-09   38.2  18.6    1.1e-09   38.2  18.6    2.2  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.2   0.7    0.0072   1.3e+02     125     171 ..      54     117 ..      51     124 .. 0.66
   2 !   38.2  18.6   6.4e-14   1.1e-09       3     179 ..     121     314 ..     119     317 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.0072
  BPD_transp_1 125 avlleflgswpGlgtllleailgydyseis..................nggvlalviavlllnlv 171
                   a+++ +++++p +g+ ++ +++ yd+ +                    +++++ ++ ++ +++++
    KIR61095.1  54 ALVMVLVTAYP-IGYSIWLSLQRYDLRFPDerkfvglenyatvltnefWWTAFGVTMLITVVTVA 117
                   56677777787.88888888888888877788888888888888877644444444444444444 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 6.4e-14
  BPD_transp_1   3 llGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvf..............vilsilghlilp.viillllsaapyvrlirraalrslpkd 82 
                   +lG+ +a  ++r  +++ ++r+   +++++ ++v a+ + ++               + l     + l+ ++++ ++ ++p++ l+  a+l  +p+d
    KIR61095.1 121 VLGMGLAliMHRTLVGRGIVRTAALIPYGIVTVVAAFSWRYAWtpgtgylanlfgdgAPL-TERASSLAiIMLAEIWKTTPFMALLLMAGLALVPED 216
                   677777877888888888999999999999888877776666677777777777774333.34455555377777********************** PP

  BPD_transp_1  83 lveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG.lgtllleailgydyseisnggvlalviavlllnlvadilqrl 178
                   l +aa ++Ga+ wq+f kv+lP ++p i+  l+++   ++  +  ++ l++++   +++ + a+++    +++ +g+ + v+++l + ++a+++++l
    KIR61095.1 217 LLKAASTDGATAWQRFTKVMLPVMKPAILVALLFRTLDAFRVFDNIYVLTAGGNeTSSVSMLAYNNLIRGLNLGIGSTMSVLIFLTVAVIAFVFVKL 313
                   ****************************************999999999966546444444444444444444557777777777777777777776 PP

  BPD_transp_1 179 l 179
                   +
    KIR61095.1 314 F 314
                   5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2493.34
//
Query:       KIR61096.1  [L=277]
Description: sugar ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-22   77.7  11.7    9.3e-22   77.7  11.7    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   3.2     0.012   2.2e+02      19      40 ..      14      35 ..       1      83 [. 0.82
   2 !   77.7  11.7   5.2e-26   9.3e-22       1     183 [.      83     270 ..      83     272 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.012
  BPD_transp_1 19 llrpliivllslPsfvlaillv 40
                  ll++++ v+  +P++++a l +
    KIR61096.1 14 LLDVIVVVFALVPVLWIASLSF 35
                  789999************9977 PP

  == domain 2  score: 77.7 bits;  conditional E-value: 5.2e-26
  BPD_transp_1   1 gillGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasr 94 
                   +++lG++aa    +  ++++kll +++ ++ ++P + l+ +l+ +   + +l +++ ++i+ ++++a+p+++++ +a+++++p dl++aa+++Ga+ 
    KIR61096.1  83 AVVLGAMAAyaiSRLDFPGKKLLVGVSLLIAMFPQVSLVSPLFEI-ERQLGLFDTWPGLILPYITFALPLAIYTLSAFFKQIPWDLEKAAKMDGATQ 178
                   589******99999*****************************54.333355566666*************************************** PP

  BPD_transp_1  95 wqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis.....nggvlalviavlllnlvadilqrlldprv 183
                    q fr+v+ P+a+p ++t++il+f++ +++++++ +l+s      +++ + l++ + e +      ++ +a+v++++++++++ ++qr +   +
    KIR61096.1 179 GQAFRRVIAPLAAPGLFTTAILVFIFCWNDFLFAITLTSTE--RARTVPVALSFFTGESQfedptGAICAAAVVITVPIIAFVLFFQRRIVSGL 270
                   **************************************874..555555555555555567888888999999*************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1904.28
//
Query:       KIR61097.1  [L=401]
Description: ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-31  107.5   0.0    1.3e-30  106.7   0.0    1.4  1  ABC_tran         ABC transporter
    2.4e-11   44.3   0.2    1.1e-10   42.1   0.1    2.3  1  OB_MalK          MalK OB fold domain
    6.1e-07   29.5   1.3     0.0021   18.2   0.0    3.5  3  TOBE_2           TOBE domain
    2.5e-05   23.9   0.1     0.0007   19.1   0.1    2.6  2  SMC_N            RecF/RecN/SMC N terminal domain
    0.00014   21.8   0.0    0.00036   20.5   0.0    1.6  1  RsgA_GTPase      RsgA GTPase
     0.0002   21.9   3.4    0.00061   20.3   0.4    2.9  2  CysA_C_terminal  CysA C-terminal regulatory domain
     0.0002   21.3   0.0       0.18   11.6   0.0    2.4  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0029   17.5   0.0     0.0046   16.9   0.0    1.3  1  Rad17            Rad17 P-loop domain
     0.0037   17.7   0.3     0.0092   16.4   0.1    1.9  2  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
       0.01   16.1   0.0      0.024   14.9   0.0    1.6  1  AAA_22           AAA domain
      0.013   15.2   0.0      0.028   14.2   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
      0.023   14.8   0.0      0.047   13.8   0.0    1.4  1  Ribosomal_S17    Ribosomal protein S17
      0.031   13.6   0.1      0.048   13.0   0.1    1.3  1  AIG1             AIG1 family
      0.034   13.7   0.1       0.14   11.7   0.0    2.0  2  AAA_25           AAA domain
      0.038   13.7   0.0       0.05   13.3   0.0    1.2  1  AAA_15           AAA ATPase domain
       0.06   13.8   0.0        0.1   13.1   0.0    1.3  1  AAA_23           AAA domain
      0.088   13.2   0.0       0.18   12.2   0.0    1.5  1  AAA              ATPase family associated with various cellul
      0.092   13.0   0.1       0.58   10.4   0.0    2.2  2  AAA_28           AAA domain
       0.13   12.3   0.2       0.38   10.7   0.0    1.9  2  AAA_5            AAA domain (dynein-related subfamily)
       0.13   12.4   0.0       0.52   10.5   0.0    2.0  2  AAA_33           AAA domain
       0.22   11.9   0.0       0.44   10.9   0.0    1.5  1  RNA_helicase     RNA helicase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.0   1.5e-33   1.3e-30       2     136 ..      21     162 ..      20     163 .. 0.96

  Alignments for each domain:
  == domain 1  score: 106.7 bits;  conditional E-value: 1.5e-33
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 ++v+l++  ge v +vG++G+GKSt l+++agl++  +Ge+++ g+ +++  +   ++ i++++q   l p++tvren             + d+++e+
  KIR61097.1  21 QDVDLEIADGEFVILVGPSGCGKSTTLNMIAGLEDISSGELRIGGQRVND--KAPRDRDIAMVFQSYALYPNMTVRENmafplklakldkeTIDSKVEE 117
                 799**********************************************9..888999****************************99988888889** PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 a++ l+l+ l d++     ++LSgGq+qrva+ ra++++pk +l+DEp 
  KIR61097.1 118 AAKVLELTPLLDRKP----ANLSGGQRQRVAMGRAIVRQPKAFLMDEPL 162
                 ******999999998....*****************************7 PP

>> OB_MalK  MalK OB fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1   1.3e-13   1.1e-10       1      53 []     236     287 ..     236     287 .. 0.84

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 1.3e-13
     OB_MalK   1 GSPaMNflpatveedgvlvegggvtlplpeeq.klalklyagkevilGiRPEhi 53 
                 GSP+MNfl+a v++++ l ++ g ++p+ ++  +  +++ a +e+ilGiRPEh+
  KIR61097.1 236 GSPSMNFLHAAVDDGK-LRTAIG-DVPIGDRIrRELEAGDAPRELILGIRPEHF 287
                 9************666.333333.799999997779999999***********7 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1       1.1   9.3e+02      36      66 ..     176     207 ..     171     208 .. 0.66
   2 !   18.2   0.0   2.4e-06    0.0021       1      52 [.     280     337 ..     280     346 .. 0.83
   3 !    7.7   0.0    0.0045       3.9      40      76 .]     347     380 ..     343     380 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.1
      TOBE_2  36 vvelaggqlvvvrqpnadr.dsalapGdtVel 66 
                 vv+  + ql ++ + ++++  +a++ Gd+V +
  KIR61097.1 176 VVSRLQKQLGTTTVYVTHDqTEAMTLGDRVVI 207
                 55555555666666666664589999999975 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 2.4e-06
      TOBE_2   1 laiRPEklrla....aagg.an.glsGtVedveylGsstryvvelaggqlvvvrqpna 52 
                 l+iRPE+ + a    ++++ ++  +++ V+ ve +Gs+  ++ +l+g++  +++ +  
  KIR61097.1 280 LGIRPEHFEDAelvdDDTRrRGaEFTAPVDIVESMGSDKYVYFTLEGERASAAELEEL 337
                 79********9**98444433459************************9988877655 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0045
      TOBE_2  40 aggqlvvvrqpnadrdsalapGdtVelswdpddavvl 76 
                 +gg+ +v+r ++++   ++++G+  +++++ ++++++
  KIR61097.1 347 GGGASLVTRLSAES---TVREGEDRRVWFNLEKIHLF 380
                 46666677777777...******************98 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   8.2e-07    0.0007      23     205 ..      29     199 ..      11     212 .. 0.68
   2 ?   -0.3   0.0      0.72   6.2e+02      97     144 ..     308     352 ..     288     355 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8.2e-07
                 TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkk 121
                 + +f ++vGp G+GKs  l+ i   L + s+ +lr     + ++  k+ +  + a v   +    + ++ e+  + ++  +  k+    +i+ k  + +
  KIR61097.1  29 DGEFVILVGPSGCGKSTTLNMI-AGLEDISSGELRIGG--QRVND-KAPRDRDIAMVFQSYALYPNMTVRENMAFPLKLAKLDKE----TIDSKVEEAA 119
                 457999*************999.344444555666543..33454.566666666666666555555555555566665555555....5999999999 PP

                 HHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 122 evsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                 +v el +  + ++ +LSgG+++ va+    Ai + +p++ +l+De  ++LD+k + ++ +++ + +k+     + ++++++e +
  KIR61097.1 120 KVLELTPLLDRKPANLSGGQRQRVAMG--RAIVR-QPKA-FLMDEPLSNLDAKLRVQMRTVVSRLQKQLGTTTVYVTHDQTEAM 199
                 99999999999**********987765..45543.4444.79*********998888877777777764444443333333333 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.72
                 EEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STTCS-HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  97 vsisrrvkrkgeseykingkevtkkevsellesagiskelLSgGektL 144
                 v i  ++ +++   ++++g++++ +e++el ++ag +   +SgG  +L
  KIR61097.1 308 VDIVESMGSDKYVYFTLEGERASAAELEELAADAGAD---FSGGGASL 352
                 6677788888888999*************99998865...56666666 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   4.2e-07   0.00036      92     131 ..      22      62 ..       9      67 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.2e-07
                  HHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  92 elkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  ++  +++d ++++lvG+SG GKSt +n++++ ++++ ge++
   KIR61097.1  22 DVDLEIADgEFVILVGPSGCGKSTTLNMIAGLEDISSGELR 62 
                  55556666699*******************98888887765 PP

>> CysA_C_terminal  CysA C-terminal regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.83   7.1e+02       7      20 ..      56      69 ..      55      80 .. 0.79
   2 !   20.3   0.4   7.1e-07   0.00061       1      42 [.     241     288 ..     241     288 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.83
  CysA_C_terminal  7 vedGklriGglalp 20
                     ++ G lriGg ++ 
       KIR61097.1 56 ISSGELRIGGQRVN 69
                     678*******9876 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 7.1e-07
  CysA_C_terminal   1 NlFhGrvedGklriGglalpvP.....elagadg.qevvayVRPhDle 42 
                      N++h+ v+dGklr +  ++p+      el++ d  +e ++++RP+++e
       KIR61097.1 241 NFLHAAVDDGKLRTAIGDVPIGdrirrELEAGDApRELILGIRPEHFE 288
                      9************98888888888999444444449**********97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00021      0.18       1      26 [.      32      62 ..      32      91 .. 0.74
   2 !    7.5   0.0    0.0037       3.2     234     298 ..     132     194 ..      97     199 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl.....d 26
                + +l+Gp g+GKS+ L  + +l ++     +
  KIR61097.1 32 FVILVGPSGCGKSTTLNMIAGLEDIssgelR 62
                679****************999665544432 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0037
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 +++lS G+++  a+  a+ r++   + +l DEp ++L+ kl     +++++l++  g+  + +TH+
  KIR61097.1 132 PANLSGGQRQRVAMGRAIVRQP---KAFLMDEPLSNLDAKLRVQMRTVVSRLQKqLGTTTVYVTHD 194
                 5678888888889999999999...67***************999999977777688899*****8 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.4e-06    0.0046      40      67 ..      25      52 ..      17      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.4e-06
       Rad17 40 LesrkkriLLisGPsGCgkstvvkvLsk 67
                Le +  + +++ GPsGCgkst++++++ 
  KIR61097.1 25 LEIADGEFVILVGPSGCGKSTTLNMIAG 52
                66666778899************99875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.1e-05    0.0092      23      45 ..      29      51 ..      23     195 .. 0.85
   2 ?   -2.1   0.0       5.2   4.4e+03     102     149 ..     334     382 ..     289     388 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.1e-05
      AAA_16 23 rpelvllsGesGvGKsslvrell 45
                ++e v+l+G+sG+GKs+ +++++
  KIR61097.1 29 DGEFVILVGPSGCGKSTTLNMIA 51
                4589***************9987 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.2
      AAA_16 102 eeala.avpelagaea....srllellkrll.allsrderplvlvlDdlqwade 149
                 +e+la +++++          +l   l++   ++  + +r + + l+ ++ +d+
  KIR61097.1 334 LEELAaDAGAD----FsgggASLVTRLSAEStVREGE-DRRVWFNLEKIHLFDP 382
                 22222122222....1333355555555555333333.4446666666666665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   2.8e-05     0.024       6      28 ..      31      53 ..      27      86 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.8e-05
      AAA_22  6 gilvvtGesGtGKTtllrrlleq 28
                 +++++G+sG+GK+t+l++++  
  KIR61097.1 31 EFVILVGPSGCGKSTTLNMIAGL 53
                689**************998765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.2e-05     0.028      15      39 ..      23      47 ..      16      53 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.2e-05
      AAA_29 15 htieidlkg.atlltGpsGsGKSTll 39
                 ++ei   g +++l+GpsG GKST l
  KIR61097.1 23 VDLEIAD-GeFVILVGPSGCGKSTTL 47
                4556664.3599************87 PP

>> Ribosomal_S17  Ribosomal protein S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.5e-05     0.047      13      54 ..     168     209 ..     166     213 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.5e-05
                    EEEEEEEEEETTTTEEEEEEEEEEEE-TTTS--TT-EEEEEE CS
  Ribosomal_S17  13 vVrverlvkhpkykkyvkrrkkylahdennsvkvGDiVriee 54 
                    + rv+ +   ++ +k    ++ y  hd+ + +  GD+V i+ 
     KIR61097.1 168 KLRVQMRTVVSRLQKQLGTTTVYVTHDQTEAMTLGDRVVIMR 209
                    6789999999******************************96 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   5.6e-05     0.048       3      24 ..      33      54 ..      31      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.6e-05
                EEEESSTTSSHHHHHHHHHTS- CS
        AIG1  3 ivlvGktgnGkSaTgNsilgkk 24
                ++lvG +g+GkS+T N i g +
  KIR61097.1 33 VILVGPSGCGKSTTLNMIAGLE 54
                79***************97755 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016      0.14      30      50 ..      27      47 ..      23      52 .. 0.88
   2 ?   -3.0   0.0       5.5   4.7e+03     172     188 ..     177     193 ..     164     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
      AAA_25 30 lpagelallaGapgtGKttla 50
                ++ ge+++l+G++g+GK+t +
  KIR61097.1 27 IADGEFVILVGPSGCGKSTTL 47
                5689**************965 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.5
      AAA_25 172 leriarrtgaavllvhH 188
                 + r+++++g +++ v H
  KIR61097.1 177 VSRLQKQLGTTTVYVTH 193
                 56889999999999998 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.8e-05      0.05      15      48 ..      21      55 ..      19     128 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.8e-05
      AAA_15 15 kdveidlsee.ltvliGkNnsGKSsilealdlFln 48
                +dv++++ +  + +l+G+ ++GKS+ l+++  + +
  KIR61097.1 21 QDVDLEIADGeFVILVGPSGCGKSTTLNMIAGLED 55
                67778887777******************976655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00012       0.1      12      39 ..      22      50 ..      11      53 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00012
      AAA_23 12 dqeidF.skgltlItGpNGaGKTTildAi 39
                d++++  +  +++++Gp G+GK+T l+ i
  KIR61097.1 22 DVDLEIaDGEFVILVGPSGCGKSTTLNMI 50
                44444466678899************988 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00021      0.18       1      21 [.      33      53 ..      33      89 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00021
                EEEESSTTSSHHHHHHHHHHH CS
         AAA  1 vllyGppGtGKTllakavake 21
                v+l+Gp G+GK+++ + +a  
  KIR61097.1 33 VILVGPSGCGKSTTLNMIAGL 53
                68**************99975 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00068      0.58       2      20 ..      33      51 ..      32      83 .. 0.89
   2 ?   -0.4   0.1       1.4   1.2e+03      71     102 ..     304     336 ..     266     344 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00068
      AAA_28  2 ivitGgestGKTtlleaLa 20
                ++++G++++GK+t+l+ +a
  KIR61097.1 33 VILVGPSGCGKSTTLNMIA 51
                899************9887 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.4
      AAA_28  71 aankvlfcDrglldtlaYaraygge.aeaelea 102
                  + +v +++    d ++Y   +g++  +aele+
  KIR61097.1 304 FTAPVDIVESMGSDKYVYFTLEGERaSAAELEE 336
                 356666777777777777777777744445666 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00045      0.38       2      20 ..      33      51 ..      32      55 .. 0.87
   2 ?   -2.9   0.0       7.4   6.3e+03      15      46 ..     176     206 ..     174     214 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00045
                EEEE--SSSSHHHHHHHGG CS
       AAA_5  2 vlLvGppGtgKselaerla 20
                v+LvGp+G+gKs+    +a
  KIR61097.1 33 VILVGPSGCGKSTTLNMIA 51
                89**********9887665 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.4
                 HHHHGGGGBS--EEEEE--TT--HHHHH--B- CS
       AAA_5  15 laerlaaalnreveyvqltrdtteedlkgrre 46 
                 ++ rl + l+++++yv  +++t++ +l  r+ 
  KIR61097.1 176 VVSRLQKQLGTTTVYVT-HDQTEAMTLGDRVV 206
                 66666777766666654.44466655555555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00061      0.52       2      17 ..      33      48 ..      32      90 .. 0.90
   2 ?   -1.4   0.0       2.8   2.4e+03      68      96 ..     151     181 ..     103     204 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00061
      AAA_33  2 vllvGlpGsGKstlae 17
                v+lvG++G+GKst + 
  KIR61097.1 33 VILVGPSGCGKSTTLN 48
                89***********875 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.8
      AAA_33  68 sagrnvildat..nlsrrerarflklarrlg 96 
                 ++ ++++ d +  nl+++ r +++ +++rl 
  KIR61097.1 151 RQPKAFLMDEPlsNLDAKLRVQMRTVVSRLQ 181
                 4444444455555555555555555554433 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00052      0.44       1      19 [.      33      51 ..      33      69 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00052
  RNA_helicase  1 iwlyGpsgeGKStlakeLa 19
                  ++l+Gpsg+GKSt+ + +a
    KIR61097.1 33 VILVGPSGCGKSTTLNMIA 51
                  6899**********99854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 2785.28
//
Query:       KIR61098.1  [L=196]
Description: haloacid dehalogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-23   82.6   0.0      4e-23   82.4   0.0    1.0  1  HAD_2           Haloacid dehalogenase-like hydrolase
    5.9e-14   52.9   0.0      5e-12   46.6   0.0    2.0  1  Hydrolase       haloacid dehalogenase-like hydrolase
    4.6e-07   30.4   0.0    5.9e-07   30.1   0.0    1.2  1  HAD             haloacid dehalogenase-like hydrolase
    3.9e-05   23.6   0.0    8.4e-05   22.6   0.0    1.5  1  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.0   8.9e-27     4e-23       2     178 .]      14     190 ..      13     190 .. 0.92

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 8.9e-27
       HAD_2   2 iFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeeekieellrkyneekkkkevkpydgvkelLeeL..keagykl 98 
                 +FD DgT++d+ + + +a++++l e g+ +l+e+ +    g +  +++  l+++     +  e +   +e ++++ +    gv  +L  +  ++ ++  
  KIR61098.1  14 LFDCDGTIVDSMPQHHTAWRRALGEWGC-DLPEDLFYAWAGRPVADIVADLNDRHGLA-MPVEAVAARREALYQELLPTATGVPGVLRHIhdAHGRVPF 110
                 9*************************99.9***********************98766.566666888888888888888888888888844477899* PP

       HAD_2  99 givTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikviav 178
                 ++v+ ++re+v+ +l  lgi + Fd+ v++ d  ++KPdpe ++ a + l++ ++ +++++D   +i+aa +ag+ ++ v
  KIR61098.1 111 AVVSGSTRESVTASLGSLGILDRFDTLVCAGDYARPKPDPEAFLLAARLLGVPPAACLVFEDADLGIQAATAAGMASVRV 190
                 ***************************************************************************99875 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.1e-15     5e-12       3     210 .]      12     184 ..      10     184 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1.1e-15
                 EEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtva 101
                 + +fD+dGT++++ p++++++++a                   l ++ ++++++l  f +      + +   + +++l         ++ +  +   +a
  KIR61098.1  12 AYLFDCDGTIVDSMPQHHTAWRRA-------------------LGEWGCDLPEDL--FYA-----WAGRPVADIVADL---------NDRHGLAMPVEA 75 
                 789*********************...................888999987777..777.....4445555555555.........333344444444 PP

                 HHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHT.TE.EEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 102 llqaralavftiadplkvkpeaaeavasLkaa.gi.evvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeevamVG 197
                 +  ar  a++    p     ++  +++++++a g  + ++++g+ +e + + +  lG  d fd  +++ + +  kp+pe+++ a+r L+++p+ +++++
  KIR61098.1  76 VA-ARREALYQELLP--TATGVPGVLRHIHDAhGRvPFAVVSGSTRESVTASLGSLGiLDRFDTLVCAGDYARPKPDPEAFLLAARLLGVPPAACLVFE 171
                 44.455555555545..6666666666666666777**************99*********************************************** PP

                 SSHHHHHHHHHTT CS
                 xxxxxxxxxxxxx RF
   Hydrolase 198 DgvnDaaalaaAg 210
                 D   +++a+ aAg
  KIR61098.1 172 DADLGIQAATAAG 184
                 ***********98 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.3e-10   5.9e-07       2     130 ..      14     140 ..      13     163 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.3e-10
         HAD   2 lfDfDgTLldgdsle.lllrfllrrgaprlwralreklllalfrellrldraglae.lleallagls.eelaaelerfvaevirpklldpgalellaah 97 
                 lfD DgT++d+ + +   +r+ l++          + l ++lf+  + +  a++ + l ++   +++ e++aa+ e++++e   +++  pg+l+ ++ +
  KIR61098.1  14 LFDCDGTIVDSMPQHhTAWRRALGE--------WGCDLPEDLFYAWAGRPVADIVAdLNDRHGLAMPvEAVAARREALYQELLPTATGVPGVLRHIHDA 104
                 8**********55554555535544........444455555555555555555440666677789999999999999988887778889999999944 PP

         HAD  98 raaGdrvvvvSgglrplvepllaelg....adevlat 130
                 + + ++++vvSg+ r+ v + l  lg    +d++++ 
  KIR61098.1 105 HGR-VPFAVVSGSTRESVTASLGSLGildrFDTLVCA 140
                 333.6*****************999987777777776 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.9e-08   8.4e-05       4      48 ..     147     190 ..     144     192 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.9e-08
                     TTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEE CS
  Hydrolase_like   4 KPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLV 48 
                     KP pe++  a++ lg++p+++l+  D  +  i++A +aG+ sv V
      KIR61098.1 147 KPDPEAFLLAARLLGVPPAACLVFEDA-DLGIQAATAAGMASVRV 190
                     ***************************.**************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1480.27
//
Query:       KIR61099.1  [L=206]
Description: NAD(P)H dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-16   59.4   0.0    4.8e-16   58.9   0.0    1.2  1  FMN_red       NADPH-dependent FMN reductase
    4.5e-10   39.6   0.0    6.5e-10   39.0   0.0    1.3  1  Flavodoxin_2  Flavodoxin-like fold
    1.3e-09   38.5   0.1    4.2e-06   27.0   0.0    2.4  3  Flavodoxin_5  Flavodoxin domain
      5e-05   23.5   0.2    0.00022   21.4   0.2    2.1  1  Flavodoxin_1  Flavodoxin
  ------ inclusion threshold ------
       0.16   11.7   0.1         11    5.7   0.0    2.3  2  Flavodoxin_3  Flavodoxin domain


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   1.3e-19   4.8e-16       2     145 ..       6     150 ..       5     155 .. 0.84

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 1.3e-19
                 EEEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEEETTTS.--....---HCHGHT.CGGSHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHC CS
     FMN_red   2 kilvisGSlrkgsntrklaewaaealkeagaevelidladlilpc..alcdkdlese.gqtsddvaellekiaaadaliivtPeYngsysgllKnalDr 97 
                 k++vi+ S+   + t+++a+ a ea+ eagaev l  +++l +p+     +++++ +  +t+d +++  + + +ad++i+++P+  g++ ++lK ++D 
  KIR61099.1   6 KVAVIYYSAT--GITYQMAQSACEAAGEAGAEVRLRKVREL-APDeaIRSNSGWQAHrLETQDVMEAEPDDLSWADVVILGSPTRYGMVAAQLKQFIDT 101
                 8888888875..****************************9.777775556666555799*************************************** PP

                 HT-.SSCHCCTT-EEEEEEE-SSTTTTHH.HHHHHHHHHHHTT-EEEEC CS
     FMN_red  98 lsrtrgkkelrgKpvalvavgggrrgglr.aeeqlrqvlaelgaivvpr 145
                 +++ + + +l++K+  +++  ++ +gg++ +  +l  v+ + g +vv  
  KIR61099.1 102 TGPLWARGALANKVYSAFTSTATSHGGQEsTLLSLLTVFYHWGGVVVTP 150
                 **************97775555556665515678888888666666654 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   1.8e-13   6.5e-10       3     103 ..       7     102 ..       6     151 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 1.8e-13
                   EEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCC.T-----CCCCHC.C.HHHHTT.CHHHHHHHHHHHHCSSEEEEEEE-BTTB--HH CS
  Flavodoxin_2   3 iLiinahprpeksfssalaqafvealekagphevtvrdLyad.flpvlttrdlaa.k.layeek.padveseqiekllaadaivlqfPlwwfgvPai 95 
                   + +i+ +  +    ++++aq++ ea+ +ag +ev+ r + ++ ++  ++     + + +a++ + +   e+e  ++l +ad+++l++P  + +v a+
    KIR61099.1   7 VAVIYYSATG---ITYQMAQSACEAAGEAG-AEVRLRKVRELaPDEAIRS----NsGwQAHRLEtQDVMEAEP-DDLSWADVVILGSPTRYGMVAAQ 94 
                   5666666655...789**************.9*********988888886....2223344443247779999.*********************** PP

                   HHHHHHHH CS
  Flavodoxin_2  96 lKgwiDrv 103
                   lK++iD  
    KIR61099.1  95 LKQFIDTT 102
                   ******74 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00035       1.3       2      35 ..       9      42 ..       8      52 .. 0.89
   2 !   27.0   0.0   1.2e-09   4.2e-06      26      87 ..      58     125 ..      47     141 .. 0.76
   3 ?   -3.7   0.0       3.6   1.3e+04      76      90 ..     178     192 ..     169     197 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00035
  Flavodoxin_5  2 ilYsSrdGqTkkiaeriaeelreegelvdvedve 35
                  ++Y S++G T + a++  e+ +e+g++v +++v+
    KIR61099.1  9 VIYYSATGITYQMAQSACEAAGEAGAEVRLRKVR 42
                  89*****************************995 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 1.2e-09
  Flavodoxin_5  26 gelvdved.vekesedlesydavvigasvyygkllpelakFvekh.....reaLstkpvalfsvslta 87 
                   ++ ++ +d +e+e +dl+++d v++g++ +yg +  +l++F+++      r aL++k   +f+   t+
    KIR61099.1  58 AHRLETQDvMEAEPDDLSWADVVILGSPTRYGMVAAQLKQFIDTTgplwaRGALANKVYSAFTSTATS 125
                   556666662334677****************************9877777777777776666665555 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3.6
  Flavodoxin_5  76 kpvalfsvsltarkp 90 
                    +val ++ lta+++
    KIR61099.1 178 DHVALAATALTAKRA 192
                   556777777776654 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   6.2e-08   0.00022       1      41 [.       9      48 ..       9     137 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6.2e-08
                  EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGG CS
  Flavodoxin_1  1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydesls 41
                  ++Y+S tG t ++A++ +e +ge+g ++++ +++++  + +
    KIR61099.1  9 VIYYSATGITYQMAQSACEAAGEAGAEVRLRKVRELAPD-E 48
                  89****************************999999865.3 PP

>> Flavodoxin_3  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.003        11       2      30 ..       9      37 ..       8      53 .. 0.78
   2 ?    3.9   0.0     0.011        39      33      65 ..      69     101 ..      48     104 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.003
  Flavodoxin_3  2 ilysSltGNTkkvAeaikealeeekeivs 30
                  ++y S tG T ++A++  ea+ e  + v 
    KIR61099.1  9 VIYYSATGITYQMAQSACEAAGEAGAEVR 37
                  99**************9999988544444 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.011
  Flavodoxin_3  33 eakekveeadvvfvGfwvdkgtadeealkflet 65 
                   ++ + ++ advv++G  ++ g+  +++++f+ t
    KIR61099.1  69 AEPDDLSWADVVILGSPTRYGMVAAQLKQFIDT 101
                   223337889*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1373.75
//
Query:       KIR61100.1  [L=639]
Description: chorismate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-45  156.1   0.0    1.5e-45  155.8   0.0    1.1  1  Chorismate_bind  chorismate binding enzyme
    4.1e-18   65.8   0.0    8.5e-18   64.8   0.0    1.5  1  GATase           Glutamine amidotransferase class-I
  ------ inclusion threshold ------
       0.15   11.8   0.2         13    5.4   0.0    2.2  2  Peptidase_C26    Peptidase C26


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.8   0.0   2.5e-49   1.5e-45       3     258 .]     118     375 ..     116     375 .. 0.90

  Alignments for each domain:
  == domain 1  score: 155.8 bits;  conditional E-value: 2.5e-49
                      CHHHHHHHHHHHH.HHTTS-SEEEEEEEEEECESS-..B-HHHHHHHHHCT.BSSSEEEEEEETTEEEEEEESSEEEEEETTSEEEEECEEEEE CS
  Chorismate_bind   3 edYaeavekvkee.iragdlykvvlsrrlkaeleaa..vdplalyralrar.npapysflleledsellgaSPElllkveggrrietepiaGTr 92 
                       +Ya++v++v +e i +g+  + v+ r+++a+++ +  v +la++r+l  r   a+++f++++++++l+gaSPE+ ++v++g  + ++pi GT 
       KIR61100.1 118 TEYADTVARVLAEeIGRGEGANFVVHRTMRATVQGSplVAALAALRRLLLReRGAYWTFVVHTGTRTLVGASPERHVSVDDG-LVMMNPISGTF 210
                      68999**9997544******************87641144566666666563788889999*******************66.*********** PP

                      EHSSSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEES CS
  Chorismate_bind  93 argktpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaP 186
                      ++g t+  d a   ++l+d+Ke  E  m++d   + +++va+ g   v   ++++++s++ h+   + g+    +++ d+l++++ +++vtG P
       KIR61100.1 211 RHGGTA--DTASLLRFLTDPKEVDELYMVLDEELKMMATVAERGGQVV--GPYLKEMSHLAHTEYLLAGQSC--LDVRDVLRETMFAPTVTGSP 298
                      888877..899999**************************76655555..899*****************98..899***************** PP

                      HHHHHHHHHHHSSS--TTTTSEEEEEETTS-....EEEEEE-SEEEE.ETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 187 kkrameiidelEearRgvYaGavgyldadge....aelavvIRtavv.kdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                       ++a+++i+++E + R++YaG++ +l++d+     +++ ++IRta++  d+elr+ +Ga +v +S+pe E++Et+aK
       KIR61100.1 299 MENACRVIARHERTGRRYYAGVLALLGRDEAgrqtLDAPILIRTAEIsPDGELRVPVGATLVRHSTPEGEVAETHAK 375
                      ***************************9887667799**********87899***********************99 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   1.4e-21   8.5e-18       2     185 ..     442     618 ..     441     622 .. 0.83

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 1.4e-21
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT..TTTHHHHHHHHCT....STS-EEEETHHHHHHHHHTTTEEEE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg..vegkieaikeare....nkiPiLGICLGmQllaiefgrkvvk 94 
                 ++D +d++t +l+h+l++lg+ vev p++ +a         +d ++  +Gpg+p    + k++a++ ++     ++ P L +CL +Qlla  +g ++++
  KIR61100.1 442 IVDGEDTFTGMLAHQLRALGLAVEVTPWHRPAGDD-----AYDLVVAGPGPGDPRavDQPKMAALRGLLArrlaAGAPTLAVCLSHQLLAGLLGLPLHR 535
                 7999*************************998888.....6**************985566666666555455569**********************9 PP

                 EECEEEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTT.EEEESSBTTSTTSTTHHHHHHH CS
      GATase  95 ekekehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknp.fvgvQFHPEststpegpellfn 185
                 +   +++g +  +   +t++  g  +++++      ++         +e  a++  d   +++  ++ p f gvQFHPEs+++  g ++l++
  KIR61100.1 536 RD-APYQGLQRDVSVFGTSRRVGFYSTFTAVAAADRVASA----YGPVEL-ARDPVD---HAVHALRGPgFAGVQFHPESVLSRDGLAVLAD 618
                 99.9***********8888888888888777766666654....233333.555555...5777777788**************99999876 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0051        31      97     126 ..     504     533 ..     493     552 .. 0.86
   2 ?    5.4   0.0    0.0022        13     180     216 .]     570     605 ..     562     605 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0051
  Peptidase_C26  97 LiraalergvPilgiCrGlqllnvalGGtl 126
                    L+++ l++g P l++C+ +qll+  lG  l
     KIR61100.1 504 LLARRLAAGAPTLAVCLSHQLLAGLLGLPL 533
                    67788999**************87777555 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0022
  Peptidase_C26 180 elaeelrveAvaeDgviEaieseeakafvlgvQwHPE 216
                    ++a+ +  +  a+D v  a+++ + +  + gvQ+HPE
     KIR61100.1 570 RVASAYGPVELARDPVDHAVHALRGP-GFAGVQFHPE 605
                    55555555555555555555555544.478******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 4037.22
//
Query:       KIR61101.1  [L=470]
Description: carbohydrate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-18   66.9   0.0    2.5e-18   66.5   0.0    1.1  1  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom
    5.1e-11   42.7   0.2      9e-11   41.9   0.2    1.3  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   2.8e-22   2.5e-18       2     245 .]       3     241 ..       2     241 .. 0.91

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 2.8e-22
                 EEEEEEESSEEEEEEEETTS..-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEESSEEE-T CS
      FGGY_N   2 ilglDcGttstkaivldekg..kvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpLynailw 98 
                 il+lD+Gt+s++ +vld ++  +  a a++++ +  ++ g    d+ + +++lae++ ++ +       ++  ++ s+q +++  +D+ ++pL+++++w
  KIR61101.1   3 ILALDLGTSSVRGLVLDPEAvpRPGALARRKVRVTVDDDGAGTLDAPAYLACLAECLDELAAGG--HLRDVGLVATSAQWHSVLPVDRAGEPLGPVLTW 99 
                 799**************555226678999*******************************9999..899****************************** PP

                 T--TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--EEEHHHHCTTTSEETTTTEE-HHHHHHTT CS
      FGGY_N  99 kdrrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfvtdvtnasesmlfnikklewdeellailg 197
                  d+r ++ +       +  ++  +tg+  +  +  ++l Wl+          + fl   +y+   L ++    v++as+++l+++++l wd e++++++
  KIR61101.1 100 LDTRPEPPAGATGP-ADGAAFHRRTGTWWHRCYWSVRLPWLRGRASTPP---ARFLGLAEYVLGGLLDAAPMSVSQASGTGLLDLRTLTWDAEACELAA 194
                 ********998765.8999**********************98655444...469999***************************************** PP

                 --GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 198 ipeelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                   + +LP+l       g l+pe+a  +   ++   ++  gD +a+++G
  KIR61101.1 195 AGPGQLPELAGD-GWRGRLRPEHARRWPQLAEAAWAAPVGDGAASNVG 241
                 ********9865.578*********99988888888888888888887 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.2     1e-14     9e-11       1     194 [.     250     436 ..     250     438 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 1e-14
      FGGY_C   1 akvslGTssflllvgtkpv....isehglltpvagedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpaf 95 
                 a+v++GTss + lv+  p     ++ +  l  ++     ++++  ++ +  g+l+aw  ++l+l           + +a+ aa++  +  ggv  +p+f
  KIR61101.1 250 AAVTVGTSSAVRLVQAVPAgaelPPLPDRLWRYR--VDHDHVVTGAAYSSGGNLFAWADRELRL----------PRGAALDAALARIPRGGGVAADPHF 336
                 6789999999999988888554433344444444..57899999*****************988..........4566666788999************ PP

      FGGY_C  96 sglrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgs.kndllmqllAdilg.vpVerpktaeatalGaAi 192
                  g r p+  p+ +g + gls +t++ +i   ++ +v+  ++a l +le++ g p++ ++  GG++  +  +++ +Ad+l  + V+ +++ e +a GaA 
  KIR61101.1 337 GGDRPPGHAPAGSGGLGGLSFGTDAVDILAGLMSGVCRLVAADLVELESTVGGPVEVVL-GGGAVeASAWWRESFADVLApRGVYHHPDPEVGATGAAR 434
                 ***********************************************999888877655.566666********************************9 PP

      FGGY_C 193 lA 194
                 +A
  KIR61101.1 435 VA 436
                 88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3179.92
//
Query:       KIR61102.1  [L=871]
Description: ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.1e-26   91.7  22.4    9.1e-26   91.7  22.4    2.2  2  NIT          Nitrate and nitrite sensing
    0.00015   22.1   1.0    0.00094   19.5   1.0    2.6  1  HAMP         HAMP domain
    0.00051   20.5   0.0    0.00098   19.6   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
     0.0035   17.3   1.3        1.7    8.7   0.2    2.8  2  HATPase_c_2  Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> NIT  Nitrate and nitrite sensing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7  22.4     2e-29   9.1e-26       1     229 [.      88     334 ..      88     335 .. 0.89
   2 ?   -1.2   2.9      0.52   2.3e+03      80     228 ..     396     548 ..     361     550 .. 0.57

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 2e-29
         NIT   1 dLvhaLQkERglsagylasgg.....ge..rkaae.laaqraatDaalaalr......a.l.aglarrldallraldqLpalRrqvdtrkldakeav.a 82 
                 d+vh+LQ+ER+ +ag la  +     g+  ++a + l+  +  tDaa+++lr      a + a+ +  ++a+l+a+dq+  +R++v   ++ a++++  
  KIR61102.1  88 DVVHQLQQERDRTAGELAELRrsgggGAarDAAIAaLKPLQSSTDAAVQELRraagplAdAdAAWQVAYSAALEAYDQVVYIRAAVPP-AVLASDTIlS 185
                 68****************888887651145445555**************999***996688999999******************54.567777777* PP

         NIT  83 aYtdviaaLldladelaqgspdrelarqlralaalsrakEalsqerallaaalaagrfsaalyaaflslvarqqaalaefraaatpaqralydetvtgp 181
                  Y ++++aLl+l+ + + g + r+l  ++  +++l+r kE  s+ ra l aa  agr   +++ ++++l+a+q +al++fr aat +q ++yd++  +p
  KIR61102.1 186 NYHRAVSALLNLLAQPSPGEGRRALNEAVLRYVQLARVKELSSRVRAELYAAARAGRYGVEDQVELTDLRAQQLTALGAFRVAATTEQIRRYDAVSVDP 284
                 *************998889999************************************************************************8779* PP

         NIT 182 avkaaetlrdr.lastg...gv.daedeeeWfaastaridqlravesrladdl 229
                 a +aa++l+++ l+s g   +v  a +   W+aas +r ++lr++e ++ dd+
  KIR61102.1 285 AFTAAAKLEEQsLPSGGaepKVlPAPQ---WWAASEQRQELLRQLEASVVDDA 334
                 ***********8743333454456677...*******************9985 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.52
         NIT  80 avaaYtdviaaL..ldladelaqgspdrelarqlralaalsrakEalsqerallaaalaagrfsaalyaaflslvarqqaalaefraaatpaqralyde 176
                 a+++  +v + +  +++  ++++++   e+   + a++a+ r+  +++ e+a ++  +    +   l+++ + lv rq ++l+ +++  +  + +++++
  KIR61102.1 396 ALDRLRQVTGGVpeIEVPAAVVRSL--DEVGELAEAFVAVHRSAVSVAVEQATMRRNVNL--MFVNLARRSQVLVERQLELLDGLEREES--DPDQLEN 488
                 5555555555554455666666643..458888888999999999999999988776664..4566777777777777777777744422..3335555 PP

         NIT 177 tvt.gpavkaaetlrdr.l..a...stg..gvdaede....eeWfaastaridqlravesrladd 228
                 +++ +  ++++++  ++ l  a   st+  +     +     +   a++a i+q+++v  +  +d
  KIR61102.1 489 LFKlDHLAARMRRNDESlLvlAgseSTRrwN-----RpvalGAVLLAASAEIEQYQRVRHEQVAD 548
                 5542222222222222232222222111221.....01223335555677777777777666665 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   1.0   2.1e-07   0.00094       1      50 [.     369     436 ..     369     439 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.1e-07
                 HHHHTTHHHHHHHHHHHHHHTT...T..............BTSSTCCT.TSSSHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaa...G..............dldtrlpv.sgrDEiGeLarafNaMldr 50 
                 l+ r+i r++r L+ +a ria+                  +++++  v ++ DE+GeLa+af a +++
  KIR61102.1 369 LVGRTIARSMRLLRGQALRIAQielPdaldrlrqvtggvpEIEVPAAVvRSLDEVGELAEAFVAVHRS 436
                 589******************876625666666677789999999***9*************888765 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.2e-07   0.00098       4     104 ..     557     655 ..     554     663 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.2e-07
                 HHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEE CS
   HATPase_c   4 krLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGt 102
                   L +++ +l++Na  f+ +++ + v+ +++    v+++ D G G+ ++ l +  e + +   +++    + +Gl +v  l+ ++   ++++s p  G 
  KIR61102.1 557 GDLVHLFAELLENATTFSRPDTAVLVTARPEGHGAVVEIVDRGLGMGPAALAEANEVLAT-PPAADVAASERMGLFVVSHLAARHAVVVRLHSAP-DGL 653
                 5799*************889999999999655899*****************77777777.4445556778889****99999999999998888.444 PP

                 EE CS
   HATPase_c 103 tf 104
                   
  KIR61102.1 654 VA 655
                 44 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0017       7.6      23      83 ..     197     257 ..     176     274 .. 0.83
   2 !    8.7   0.2   0.00037       1.7      28     110 ..     555     638 ..     521     658 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0017
  HATPase_c_2  23 glseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetl 83 
                   l++    e r a++Ea+ + v+ a+ ++ + +v+ +l  +++a +  v+D+ +  d++++
   KIR61102.1 197 LLAQPSPGEGRRALNEAVLRYVQLARVKELSSRVRAELYAAARAGRYGVEDQVELTDLRAQ 257
                  555555667888****************99*********************9998777655 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00037
  HATPase_c_2  28 lldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep....keslkegGrGlalikglvD 110
                  ++ ++    +E++ Na +  ++   +  v v+++ ++   +ve+ D+G g  p++l++ +e  +    ++ + ++ +Gl+++ +l+ 
   KIR61102.1 555 VIGDLVHLFAELLENATTFSRP---DTAVLVTARPEGHGAVVEIVDRGLGMGPAALAEANEVLAtppaADVAASERMGLFVVSHLAA 638
                  5556666778999999999997...577999999****************8888777766555478877777777789999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 5822.70
//
Query:       KIR61103.1  [L=141]
Description: dynein regulation protein LC7 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-22   77.9   0.6    5.3e-22   77.4   0.6    1.2  1  Robl_LC7  Roadblock/LC7 domain
     0.0024   18.1   0.1     0.0038   17.5   0.1    1.4  1  DUF2173   Uncharacterized conserved protein (DUF2173)
     0.0059   15.8   0.5     0.0067   15.6   0.5    1.1  1  DUF1464   Protein of unknown function (DUF1464)


Domain annotation for each model (and alignments):
>> Robl_LC7  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.6   8.8e-26   5.3e-22       3      90 ..      12     100 ..      10     101 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 8.8e-26
                 HHHHHHCCHHCTECEEEEEETTS-EEEE.CCSSSS-HHHHHHHHHHHHHHHHHHHHHCTSSSECEEEEEETTEEEEEEECTTTEEEEEE CS
    Robl_LC7   3 eelleelqsvpgvrgalvvskdGlviat.stldnddadqlAalasgllsaakaaarelgegelkelliegkkgelyltpagegalLvvl 90 
                 +++    q+vpgv +a+vvs+dGl++a   +l++d ad+lAa++sg++s + +aa++++++ +k++++e+ +g+++++++ +g++L+ l
  KIR61103.1  12 WLVSAFAQRVPGVAHAIVVSSDGLLVAVsDHLPRDHADKLAAVTSGVMSITAGAAQMFDGDIVKQTVVEMGRGYFLVMQVRDGSILATL 100
                 999999********************************************************************************987 PP

>> DUF2173  Uncharacterized conserved protein (DUF2173)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   6.4e-07    0.0038       7      58 ..      20      71 ..      18     103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6.4e-07
     DUF2173  7 klpGvvAagefsddGelveykGeldeeeaemlakmcaantrmvkmqadglea 58
                ++pGv  a+  s dG lv+   +l+ + a+ la++   ++ ++ + a++++ 
  KIR61103.1 20 RVPGVAHAIVVSSDGLLVAVSDHLPRDHADKLAAVTSGVMSITAGAAQMFDG 71
                589***********************************************75 PP

>> DUF1464  Protein of unknown function (DUF1464)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.5   1.1e-06    0.0067     127     199 ..      48     120 ..      19     127 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.1e-06
     DUF1464 127 ADKlasavlavad...eaeee.eyrelsFilvEvGsgfnaviaVknGkivDGlGgtilpGflsaGalDgEvAyllgk 199
                 ADKla +  +v++    a +  +   ++  +vE+G+g+  v+ V++G i+    +t+  G   +G++  E+A l ++
  KIR61103.1  48 ADKLAAVTSGVMSitaGAAQMfDGDIVKQTVVEMGRGYFLVMQVRDGSIL----ATLAAGDADIGVVGYEMARLAKQ 120
                 999998766665411144444688889999*******************8....57788888888888888877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1043.17
//
Query:       KIR61104.1  [L=499]
Description: beta-glucosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.7e-156  521.2   0.0   1.6e-155  518.0   0.0    1.9  1  Glyco_hydro_1  Glycosyl hydrolase family 1


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  518.0   0.0  8.7e-160  1.6e-155       4     452 ..      64     498 ..      62     499 .] 0.97

  Alignments for each domain:
  == domain 1  score: 518.0 bits;  conditional E-value: 8.7e-160
                    GS-TT-EEEEE--HHHHH--TTSTT---BHHHHHHHHGGGSTTS---SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHSTTSTT---HHHHHH CS
  Glyco_hydro_1   4 tfpedFlwgaataayqiEGawnedGkgesiwDtftetpgkvlegsngdvacdsYhrykeDvallkelgvkayrfSisWpRilPkGegeinekGlay 99 
                    +fp +F wgaat+ayq+EGa++edG+ges+wDtf++tpg++ +g++gd+a+d+Yhry+ D++l+++lg+++yrfSisWpRi P+G+g++n++Gl++
     KIR61104.1  64 RFPTGFGWGAATSAYQVEGATKEDGRGESVWDTFSRTPGRTRNGDTGDIAADHYHRYADDLDLMRDLGLRSYRFSISWPRIQPDGTGTPNQRGLDF 159
                    6*********************************************************************************************** PP

                    HHHHHHHHHHTT-EEEEEEESS--BHHHHHH-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHTSS-STT-S-TTTHHHHHHHH CS
  Glyco_hydro_1 100 YerLidelleagieplvTlyHwdlPqaLqdeGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvvallgyltgefaPgkkdleaayeaaHn 195
                    Y+rL+d l+e+gi+p++Tl+HwdlPq+Lqd+Ggwenr++  +f eyaev+f+ +gd+v +wlT+nEp++v++ gyl g++aPg +d +aay +aH+
     KIR61104.1 160 YRRLVDGLHERGISPMATLFHWDLPQTLQDAGGWENRDTAYRFAEYAEVLFRGLGDRVPVWLTINEPKTVVQNGYLHGHHAPGFQDPQAAYLVAHH 255
                    ************************************************************************************************ PP

                    HHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHHHHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGGG...S----HHHHHHHTT--SEE CS
  Glyco_hydro_1 196 lllaharavklykevaqkgkigivlnlslaeplseseedkeaaeraleflngwfldpvvkGdYpeemkellrerga.lpeiteedkellkgkadfl 290
                    l lah+ av++ + + ++++ig +lnl+  +p+++s+e  +a++ ++ + n+ +ld ++kG+Yp+++   l+  ++ +  i+++d++++++++d+l
     KIR61104.1 256 LQLAHGLAVETLRATDSTARIGPALNLHPCYPADDSAEAASASHLYDGYENRLYLDSILKGSYPADVLADLGPGSRmARGIRDGDLKTISAPIDLL 351
                    ********************************************************************999988651567**************** PP

                    EEEEEEEEEEEE--...-STT---SSGGGGG-SBSS-B-SSSS-B-.HHHHHHHHHHHHHTS----EEEEE----EE-BSSS.HHH--HHHHHHHH CS
  Glyco_hydro_1 291 glnyYtsrlvknkeseeaslskteekkleeevdpslpktdigwiie.peglrkllellkkeYqklpiyiteNGlgakdeiee.gkveDdkRidYlk 384
                    ++ yYt  + +++                ++v + +p+++ +w+   p g++++l++++++Y+ +p+ +teNGl++ d++   g+v+D+ Ri++l+
     KIR61104.1 352 AVQYYTPYYLTATG---------------DTV-TRWPTSQADWQQIyPDGMYDILTRVTRDYGPIPLTVTENGLPQADTLSPdGTVDDSGRISFLR 431
                    ******98876665...............223.46899999998655********************************9877************* PP

                    HHHHHHHHHHHTT--EEEEEEE-SB----GGGTTSEE--SEEEETTTTTEEEE-HHHHHHHHHHH-SS CS
  Glyco_hydro_1 385 ehlnevkkaiedgvdlkgYvawsllDnfewaegyskrfGlvyvdrnetleRtpkkSakwykeviekng 452
                    +h++++++a++dgv l++Y +wsllDnfewaegy++r+Glvyvd + t++R pk+Sa wy+evi++ng
     KIR61104.1 432 DHMAAAHRAVTDGVPLESYHVWSLLDNFEWAEGYDQRWGLVYVD-YATQRRVPKRSALWYREVIRANG 498
                    ********************************************.9*******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3741.89
//
Query:       KIR61105.1  [L=968]
Description: cellulose 1,4-beta-cellobiosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.7e-302 1002.7  33.0   6.7e-302 1002.7  33.0    1.6  2  Glyco_hydro_48  Glycosyl hydrolase family 48
    2.6e-29  101.5  11.6    2.6e-29  101.5  11.6    4.0  4  CBM_2           Cellulose binding domain
     0.0082   15.6   0.0      0.021   14.3   0.0    1.6  1  TcfC            E-set like domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_48  Glycosyl hydrolase family 48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3      0.25   1.5e+03     441     488 ..     254     306 ..     251     317 .. 0.54
   2 ! 1002.7  33.0  1.1e-305  6.7e-302       1     622 []     342     965 ..     342     965 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.25
                     T-EE-TTSTEEEEEEEEEEE---.--SSS.....S----TTEEEEEEEEE--HH CS
  Glyco_hydro_48 441 evklkedgtfeiPstleWsGqPd.twngs.....netansnlhvevvdygqdvG 488
                     ++kl++  t ++P tl+ sG+ d t +++     + + n++++v+v++  +d  
      KIR61105.1 254 NLKLSAAPTASVPVTLTRSGDTDiTVTPAsatltTANWNTGVTVTVAAA-EDSD 306
                     5667777788999999999987733333211111344455555555543.3332 PP

  == domain 2  score: 1002.7 bits;  conditional E-value: 1.1e-305
                     HHHHHHHHHHHHH-GGG--BETTSEB-SBSSSS--SSSSSTTEEEHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHTS--TTTSTTGGG--T CS
  Glyco_hydro_48   1 ykqrflelyekikdpangyfseegvPyhsvetliveaPdyGhettsealsyylwlealygkvtgdwsklkkaWkvlekyiiPeekdqptnskynp 95 
                     y ++fl++y kik  ++gyfs+egvPyhs+etliveaPd+Ghettsea+sy+lwlea+yg+vt++w+++++aW+v+ekyiiP+++dqpt  +   
      KIR61105.1 342 YVKKFLDQYGKIK--NSGYFSPEGVPYHSIETLIVEAPDHGHETTSEAFSYWLWLEAYYGRVTQNWAPFNNAWTVMEKYIIPTHADQPTAGS--- 431
                     889**********..69***********************************************************************9764... PP

                     TS---B----SSGGG-SEE-BTTS-----SSHHHHHHHHSSSS--S-BSEEETT-TTS--STT-SSSSSEEEE---S-TT--TTS---EESEE-S CS
  Glyco_hydro_48  96 nspatyakevedpskyPsqlessvsvGkdPiaaelksaygtsdiygmhWlldvdnvygyGklgdgtskpsyintfqrGeqesvwetvpqpsieef 190
                       + +ya+e++ ps+yPs+l+ ++svG+dP+++el+s+ygt diygmhWl+dvdn+yg+G++gdgt+kp+yintfqrG+qesvwet+pqps+++f
      KIR61105.1 432 AGTPQYAAEYNLPSQYPSALNPNISVGQDPLRSELQSTYGTGDIYGMHWLMDVDNTYGFGRCGDGTTKPAYINTFQRGTQESVWETIPQPSCDTF 526
                     44558****************************************************************************************** PP

                     SSBBTTBTGGGTEE-SS-.--EEEEEB-HHHHHHHHHHHHHHHHHHHHTT-HHHCHHHHHHHHHHHHHGGGGGB-TT-EETT...CCTTSEE--G CS
  Glyco_hydro_48 191 kyGgknGfldlftkdasy.akqwkytnapdadaravqaaywakkwakeqGkekevsslvakaakmGdylryalfdkyfkkiG...sasskaagtg 281
                     k+Gg+ G+ldlf+kd+ + akqwkytnapdadaravqaaywa +wak+qGk+++v+++vakaakmGdylrya++dkyfkkiG    as+++ag+g
      KIR61105.1 527 KHGGQYGYLDLFVKDTGApAKQWKYTNAPDADARAVQAAYWALTWAKAQGKQADVAATVAKAAKMGDYLRYAMYDKYFKKIGncvGASTCPAGSG 621
                     ***************9877***************************************************************9887899****** PP

                     GGGB--S-BS--EEEEESST..--EEEE--SEEEGGG--HHHHHHHHH-GGG--SSTTHHHHHHHHHHHHHHHHHHTB-SSS-B--EEESSBTTT CS
  Glyco_hydro_48 282 kdsahyllsWyyaWGGalda..sWawrigsshahfgyqnplaayalskdselkpksatakkdwaksldrqlefyqwlqsaeGaiaGGatnswnGs 374
                     kdsahyllsWyyaWGGa+d+  +W+wrigssh+hfgyqnp+aa+a+++++elkpks+ta  dw+ksldrqlefy+wlqsaeG+iaGGatnsw+G+
      KIR61105.1 622 KDSAHYLLSWYYAWGGAYDTsqNWSWRIGSSHSHFGYQNPFAAWAMTNVNELKPKSPTAVGDWQKSLDRQLEFYTWLQSAEGGIAGGATNSWDGN 716
                     *******************9999************************************************************************ PP

                     TB---TTT-EETTEEEESS-S-TTTTTTTBTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHT-EE-TTSTEEEEEEEEEEE-----SSSS CS
  Glyco_hydro_48 375 yekapagtstfygmaydekPvyadPpsnkWfGfqaWsmervaelyyetgdakakklldkWvkWvlsevklkedgtfeiPstleWsGqPdtwngsn 469
                     y ++pagt+tfygm+yd +Pvy+dPpsn+WfG+q+Wsm+r+aely etg++kak+lldkWv+W++++++l ++  +++Ps+l+W+GqP++wn+s+
      KIR61105.1 717 YGTPPAGTATFYGMFYDVDPVYNDPPSNQWFGMQVWSMQRIAELYLETGNTKAKALLDKWVPWAIANTTLGTN--WSVPSELKWTGQPANWNPSS 809
                     **********************************************************************986..******************** PP

                     ----TTEEEEEEEEE--HHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHBESSSB--EEE-CCCGGGGHB.......BB---TT-- CS
  Glyco_hydro_48 470 etansnlhvevvdygqdvGvaaslaktllyyaaaskkeddkeakelakelldalwelarddkGvaapetradykrffde.......evyvPsgws 557
                     ++an++lhvev+++gqdvGv++sla+tl+ yaa+s+   +++ak++ k lldal ++  d+kGv+++e+r dykrf+d        ++yvP gw+
      KIR61105.1 810 PAANTGLHVEVSSTGQDVGVTGSLARTLIAYAAKSG---NTAAKTTGKGLLDALSAS-ADSKGVSTTEKRGDYKRFDDVynaadgqGLYVPPGWT 900
                     **********************************99...9*************9988.9*******************99999999********* PP

                     EE-TTS-EESTT-BTTTT-GGGGGSTTHHHHHHHHHTT---EEE--BHHHHHHHHHHHHHHHHHH CS
  Glyco_hydro_48 558 GkmpnGdviksgvtfldirskykddpkykkveaalkegeapeltyhrfWaqadiaialatyaelf 622
                     GkmpnGd+i++g +fldirs+yk+dp+++kv+a+l++g +p+++yhrfWaq+dia+a+a+y +lf
      KIR61105.1 901 GKMPNGDAIAAGKSFLDIRSFYKNDPDWPKVQAYLDGGPEPTFNYHRFWAQSDIAMAYADYGMLF 965
                     **************************************************************998 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5  11.6   4.4e-33   2.6e-29       2     101 .]      37     135 ..      36     135 .. 0.94
   2 ?   -1.9   0.0       0.7   4.2e+03      69      98 ..     244     273 ..     230     276 .. 0.78
   3 ?    1.0   0.6     0.087   5.2e+02       7      28 ..     287     308 ..     282     318 .. 0.77
   4 ?   -2.8   1.8       1.3     8e+03      34      72 ..     777     811 ..     762     834 .. 0.58

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 4.4e-33
                 EEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE-.-TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTE CS
       CBM_2   2 eatyavtseWetGftasvtvkNsgssaingWtvewtl.pagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGa 99 
                  + ya t++W++Gft++vt+kN g+++ ++Wt++wt+ +++qrv+q W+a++sq+G++vtatn s+Ng++ +G+s+++Gf+gs++gsn++pt+ft+nG+
  KIR61105.1  37 DVVYA-TNDWGSGFTGNVTIKNLGDAV-SSWTLKWTFpNSSQRVVQGWSAKWSQTGSEVTATNESYNGSLGTGASTTIGFNGSYSGSNPKPTAFTLNGT 133
                 55665.66*****************98.68*******66899********************************************************* PP

                 E- CS
       CBM_2 100 aC 101
                  C
  KIR61105.1 134 PC 135
                 99 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.7
                 EE-TTEEEEEEEEEEE-SS----S--EETT CS
       CBM_2  69 tiapGgsasfGfqgsktgsnsaptsftvnG 98 
                 ++  Gg+a+f ++ s + + s p + t  G
  KIR61105.1 244 SVSEGGTATFNLKLSAAPTASVPVTLTRSG 273
                 678899999999999988888777666555 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.087
                 EEEE-SSEEEEEEEEEE-SSS- CS
       CBM_2   7 vtseWetGftasvtvkNsgssa 28 
                 +t +W+tG t++v+   +++++
  KIR61105.1 287 TTANWNTGVTVTVAAAEDSDTV 308
                 4679*****9999988887765 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 1.3
                 EEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-T CS
       CBM_2  34 vewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiap 72 
                 v w++  ++++   W+        ++t ++++wN + ++
  KIR61105.1 777 VPWAIA-NTTLGTNWSVPS---ELKWTGQPANWNPSSPA 811
                 556665.566666665432...24577777777766544 PP

>> TcfC  E-set like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.5e-06     0.021      13      56 ..     175     216 ..     162     227 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.5e-06
        TcfC  13 grveiyRdgqLlstqnvnaGnqeidtssLPsGiYeveirvyeng 56 
                 ++ve+yR+g L++t+  ++   ++  ++LP G+Y+v+ + y+n 
  KIR61105.1 175 SKVEFYRNGLLVNTDTTAPYGYTL--EDLPAGSYTVQAKAYDNA 216
                 89*************999755554..79***********99953 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (968 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 6304.32
//
Query:       KIR61106.1  [L=295]
Description: PA-phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-11   43.5   8.0    2.4e-11   43.5   8.0    3.6  4  PAP2      PAP2 superfamily
     0.0039   16.9  20.7      0.042   13.5  20.7    2.7  1  PAP2_3    PAP2 superfamily


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   3.8      0.18   1.6e+03      61      97 ..      69      99 ..       6     107 .. 0.66
   2 !   43.5   8.0   2.7e-15   2.4e-11       7     128 ..      98     200 ..      89     209 .. 0.84
   3 ?    0.2   0.5     0.065   5.8e+02      66     105 ..     197     241 ..     194     243 .. 0.60
   4 ?   -1.1   0.6      0.16   1.5e+03      92     110 ..     265     274 ..     229     291 .. 0.50

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.18
        PAP2 61 safafalalllalllrrkrkkiglvllalillllavl 97
                sa ++++a++++ +++  r++   v   ++++++++l
  KIR61106.1 69 SALSLLAATAMIGFIALIRRR---V---ALAITATLL 99
                344444444444444444444...1...222222222 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 2.7e-15
        PAP2   7 lalalaalltsvlKdlvgrpRPfflaeetkldtqvstletseskeakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlvalsRlyl 105
                 l +a a++ t++lK+++ r  P+f ++ +++                +s+PSgH+++a+++al+l+l+l++  +     l a + +++a++ +++ l++
  KIR61106.1  98 LLIAGANVSTQLLKHFLAR--PDFGIDPERSAAG-------------NSLPSGHTTVAASVALALILVLPPTVRV----LGAYLGTAYAAVAGVATLSA 177
                 3344455557778888875..8887777776664.............7**************************9....9******************* PP

        PAP2 106 gvHflsDvlaGlliGialaalay 128
                 g+H +sD +a++l+ +++aala 
  KIR61106.1 178 GWHRPSDAVAAFLVVGVWAALAG 200
                 **************999999875 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.065
        PAP2  66 alalllalllrrkrkkig.....lvllalillllavlvalsRlyl 105
                 ala ll l+ +r  +++      +v+++++ l  a+ v +s l+l
  KIR61106.1 197 ALAGLLLLVTQREQAQVEpadahRVAAVVLGLGGAIAVVASALAL 241
                 334444444444444433888888888888888888888887776 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.16
        PAP2  92 lllavlvalsRlylgvHfl 110
                 +  a+         g+  +
  KIR61106.1 265 AGSAA---------GIAGT 274
                 33333.........33333 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5  20.7   4.6e-06     0.042     108     189 ..     113     197 ..       2     198 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-06
      PAP2_3 108 dgasravllrgtienglaafPSlHvawallvalalwrlrrkr...llrvlalllnvlmivatvatgnHYlvDviaGvalalvaia 189
                 + a  ++ ++   +++  ++PS H+++a  valal+ + + +   l  +l+ +++++  vat+  g+H   D++a+++++ v +a
  KIR61106.1 113 FLARPDFGIDPERSAAGNSLPSGHTTVAASVALALILVLPPTvrvLGAYLGTAYAAVAGVATLSAGWHRPSDAVAAFLVVGVWAA 197
                 3344444455555556677****************99999875544467899***************************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       873  (0.0486921); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 1964.82
//
Query:       KIR61107.1  [L=227]
Description: hypothetical protein TK50_25385 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-24   85.3  19.1    6.1e-24   85.3  19.1    1.8  2  MDMPI_N   Mycothiol maleylpyruvate isomerase N-terminal domai
    0.00037   20.9   4.2       0.04   14.3   1.2    2.2  2  DUF664    Protein of unknown function (DUF664)
     0.0019   18.7   7.1      0.005   17.3   6.5    2.1  1  DinB_2    DinB superfamily
  ------ inclusion threshold ------
      0.026   14.4   0.1      0.067   13.1   0.1    1.8  1  PT-TG     Pre-toxin TG


Domain annotation for each model (and alignments):
>> MDMPI_N  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3  19.1   1.4e-27   6.1e-24       2     141 .]      13     159 ..      12     159 .. 0.92
   2 ?   -1.3   0.3       0.7   3.2e+03      61      85 ..     190     214 ..     164     220 .. 0.46

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 1.4e-27
     MDMPI_N   2 reewaalaalvagLtdeqwaapspcpGWtvadlvaHlarsaralaaalaaegaesalardaaaalvtaad..........aeavdlaaslapeallaaf 90 
                 r+e++al +++++Lt++++++p+ cp W v+dlvaH++  a +l+++laa+ a+++ ++daa ++++a++           ++++++ + +p+ ++aaf
  KIR61107.1  13 RDECTALGDVLRELTPADLDRPTDCPPWAVRDLVAHVHAGAGRLTGMLAAP-APPRAEVDAAGYFGAAKFapqvdrdrvdSARRQAREATDPAGIAAAF 110
                 8899*********************************************98.999999999999999999*********767777777788999***** PP

     MDMPI_N  91 raavtrlaaalaalppdaiadrlgipggprslgeflrtrlvEavvHglDla 141
                 ++ +++++aa+a+   d+ +++   +g ++ l efl tr+vE+ vHglDla
  KIR61107.1 111 DRDWRAADAAVARQSVDRVVRTR--HGDAMALTEFLVTRVVEVGVHGLDLA 159
                 ***********************..666666666***************97 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.7
     MDMPI_N  61 daaaalvtaadaeavdlaaslapea 85 
                  ++++l++  +a+ +d+   ++ +a
  KIR61107.1 190 LGWDRLTVLRKATGRDPLTGRERTA 214
                 2233333333345555555444444 PP

>> DUF664  Protein of unknown function (DUF664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1     0.001       4.5      81     131 ..       4      50 ..       1      62 [. 0.82
   2 !   14.3   1.2     9e-06      0.04      60     135 ..      82     152 ..      68     155 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.001
                 -HHHHHHHHHHHHHHHHHHHTT--HHHHTSB-T-......SBHHHHHHHHH CS
      DUF664  81 tladllaeyrravaradavvaaeldldetvrvpkapwgeevslrwvlvhli 131
                 t +++ a++r+++++  +v+++ +++d  +++    + +++ +r  + h+ 
  KIR61107.1   4 THDTVRAAFRDECTALGDVLRELTPADLDRPT----DCPPWAVRDLVAHVH 50 
                 67889999999999999999999999998885....677888888888875 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 9e-06
                 --TTTSHHTTTSSS---SS---HHHHHHHHHHHHHHHHHHHTT--HHHHTSB-T-......SBHHHHHHHHHHHHH CS
      DUF664  60 evpldrsaadpdadfelaedetladllaeyrravaradavvaaeldldetvrvpkapwgeevslrwvlvhlieeta 135
                 +++ dr+ + ++a+ +++e  ++a++ a+++r +++ada+va ++++d++vr+   ++g+ + l   lv  + e+ 
  KIR61107.1  82 APQVDRD-RVDSARRQAREATDPAGIAAAFDRDWRAADAAVA-RQSVDRVVRT---RHGDAMALTEFLVTRVVEVG 152
                 4444443.6677788899999*********************.********96...44555666666666666655 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   6.5   1.1e-06     0.005       6     100 ..      16     135 ..      11     212 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.1e-06
      DinB_2   6 rarllalledlteeelnrqpspgkwsiawllaHlgnveelllerlrgeeaprpgldpltp.........................psaaealaylaevr 79 
                   +l ++l++lt+++l+r+ + + w ++ l+aH+ +    l  +l  +++pr++ d +++                         +++a ++a++++ +
  KIR61107.1  16 CTALGDVLRELTPADLDRPTDCPPWAVRDLVAHVHAGAGRLTGMLAAPAPPRAEVDAAGYfgaakfapqvdrdrvdsarrqareaTDPAGIAAAFDRDW 114
                 56677899**************************************9999977777666677777777777777777777777789************* PP

      DinB_2  80 arllallealtdadldrplta 100
                 +++ a +++ + ++  r+ + 
  KIR61107.1 115 RAADAAVARQSVDRVVRTRHG 135
                 ******999777555444443 PP

>> PT-TG  Pre-toxin TG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.5e-05     0.067      21      47 ..     197     219 ..     192     227 .] 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.5e-05
       PT-TG  21 aieaitGrDpiTGeklsdwdRllaava 47 
                 +++ +tGrDp TG++ +    +l+a++
  KIR61107.1 197 VLRKATGRDPLTGRERT----ALGAAG 219
                 67889**********99....555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1454.96
//
Query:       KIR61108.1  [L=327]
Description: luciferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-52  176.9  15.4    8.3e-52  176.5  15.4    1.1  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.5  15.4   4.7e-56   8.3e-52      22     313 ..      10     291 ..       3     292 .. 0.93

  Alignments for each domain:
  == domain 1  score: 176.5 bits;  conditional E-value: 4.7e-56
  Bac_luciferase  22 lrylvelaraaEelGfdavwvaehhggpggaldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhlsgGRfglglgtggpaveerr 116
                     l++ ++   ++ ++Gf+ vw +e  g     +daft+la +aa+   +rlgta+ p++tr P +lA++aa L + ++GRf lg+g+++p v+ ++
      KIR61108.1  10 LADHAAAYATLHRAGFTDVWSSEVNG-----ADAFTPLALAAAWQPELRLGTAIAPAFTRGPGLLAMSAAALAEAAPGRFALGIGASSPVVVGDW 99 
                     5556666667789*************.....9*************************************************************** PP

  Bac_luciferase 117 fGvdhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgpiPvyvaaaspaglelaarhadglllageppeeaaelierlragaa 211
                       v +de+ +r+r+ ++ lr++++g +vd + ++f v++++l  +p+ + +P+++aa +p +l+laa  adg++l+    e++  ++++l     
      KIR61108.1 100 NAVAFDEPFKRTRDVLRFLRAALAGQTVDGAYDTFAVRRFTLERPPAVP-PPLLLAALRPGMLRLAAAEADGVILNWLAAEDVPTAVAELG---- 189
                     ***********************99999999999998888777777655.89*************************88888888888877.... PP

  Bac_luciferase 212 eagrdpadirvgisltvivadteeeAraearaliagld...fyaldsegagreaeaaeiqeeedanlwagaadavpdelvaatalvGtpeqvaer 303
                       gr p+ ++v+++++v+ + ++  Ara  r+li  +    +ya  ++  gr++ ++  +++++a++++gaa+avpde+v+a++l+G+peq++++
      KIR61108.1 190 --GR-PDGFEVVARIFVCPTSDAGHARALGRRLITTYLtvpAYAAFHRWLGRAEILDPVWRAWAAGDRRGAAAAVPDEVVDALVLHGSPEQCRDQ 281
                     ..77.779**********************99996666999****************************************************** PP

  Bac_luciferase 304 laayaeagvd 313
                     +++ya+agvd
      KIR61108.1 282 VRRYADAGVD 291
                     ********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2386.84
//
Query:       KIR61109.1  [L=263]
Description: dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-44  150.0   1.7      7e-44  149.6   1.7    1.1  1  adh_short        short chain dehydrogenase
    5.7e-34  117.7   8.1    7.3e-34  117.3   8.1    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.6e-09   37.9   4.9    2.7e-09   37.2   4.9    1.3  1  KR               KR domain
    0.00017   21.2   0.9    0.00039   20.0   0.5    1.7  2  Epimerase        NAD dependent epimerase/dehydratase family
    0.00018   21.8   1.0    0.00032   20.9   1.0    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0013   19.3   1.2     0.0027   18.3   1.2    1.6  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.032   14.3   1.1      0.053   13.6   1.1    1.3  1  Ldh_1_N          lactate/malate dehydrogenase, NAD binding do
      0.045   14.0   0.6        0.1   12.9   0.6    1.6  1  TrkA_N           TrkA-N domain
      0.059   12.7   1.5       0.11   11.8   1.5    1.4  1  ThiF             ThiF family
      0.061   12.4   0.0      0.075   12.2   0.0    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.076   12.4   0.0        0.2   11.0   0.0    1.7  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
       0.12   12.3   1.8       0.18   11.7   1.8    1.3  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
       0.16   11.5   0.1       0.24   11.0   0.1    1.2  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
       0.17   10.9   3.0       0.34   10.0   3.0    1.5  1  RmlD_sub_bind    RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.6   1.7   5.5e-47     7e-44       2     189 ..       7     191 ..       6     195 .. 0.93

  Alignments for each domain:
  == domain 1  score: 149.6 bits;  conditional E-value: 5.5e-47
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 v+++tG+++GIG a+a+++a+eGa  vv +d  ++++++va+ ++     a+a+ +Dvt +e+v+alv++ + ++g++d++ +NAG+  +++  +  ++
  KIR61109.1   7 VAVITGGAGGIGAALAHRFAAEGAAAVVvADFDADAARAVAAAVGP---VAHAAGLDVTVEEQVRALVADTERRYGHIDLFCANAGV-ATAAGLDAADA 101
                 89*********************99988455666666666666665...6*************************************.788888999** PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 +w+r   vN+ + ++ travlp ml++ +G    ++S ag+    g a+Y+A+K+a +gl++ la  ++++girv+a++P +vdT+m +e
  KIR61109.1 102 DWDRAWRVNVLAHVHSTRAVLPGMLARGQGYLLHTCSAAGLLTAVGDAPYTATKHAAVGLAEWLAVTYRDQGIRVSALCPQGVDTPMLAE 191
                 ***************************************************************************************875 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   8.1   5.7e-37   7.3e-34       2     212 ..      13     220 ..      12     228 .. 0.88

  Alignments for each domain:
  == domain 1  score: 117.3 bits;  conditional E-value: 5.7e-37
                   TTTSHHHHHHHHHHHTT-E.EEEEESSGGHHHHHHHHHHHTT..SEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   2 aasgIGraiAkalaeeGae.vvltdlneeakkrveelaeelg..aevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                    a gIG+a+A+++a+eGa  vv++d++ +a   ++++a+++g  a++  +DVt eeqv+alv+++++++g++D ++ nag+a++     l++ ++++
    KIR61109.1  13 GAGGIGAALAHRFAAEGAAaVVVADFDADA---ARAVAAAVGpvAHAAGLDVTVEEQVRALVADTERRYGHIDLFCANAGVATA---AGLDAADADW 103
                   578**************866999*****99...67777777744557************************************9...779******* PP

                   HHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTTHHHHH CS
  adh_short_C2  96 draldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla.asgikgfdell 189
                   dra  vn+ + ++ ++a+lp ++++g g ++++ s ++  +  + + y+a+K+a ++l+  lAv + ++giRv a +p  ++T++ a+g++ + +l 
    KIR61109.1 104 DRAWRVNVLAHVHSTRAVLPgMLARGqGYLLHTCSAAGLLTAVGDAPYTATKHAAVGLAEWLAVTYRDQGIRVSALCPQGVDTPMlAEGLA-TGHLG 199
                   ********************9888878**********************************************************555554.56665 PP

                   HHHHHHSTTSS-B-HHHHHHHHH CS
  adh_short_C2 190 eelearaplgrlgtpeevaeaal 212
                   +++   a  g +  p+ va+a++
    KIR61109.1 200 ARV--IAASGAVLHPDRVADAVI 220
                   555..455677778888888765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   4.9   2.1e-12   2.7e-09       4     162 ..       9     164 ..       7     179 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 2.1e-12
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 +itGG+Gg+G +la+  a++ga+ +v+   +    +d+++ +   +a g   +++ +Dv+ +++v+al+++ +++ + i      Agv+  + l+  +a
  KIR61109.1   9 VITGGAGGIGAALAHRFAAEGAAAVVVADFD----ADAARAV--AAAVGPVAHAAGLDVTVEEQVRALVADTERRYGHIDLFCANAGVATAAGLDAADA 101
                 8*************************98777....3333333..36779999*************************************9999988775 PP

                 H...HHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR 103 e...dleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaey 162
                 +   +++  + + v+ ++ +   +  +   +++ + S+agll + g a Y+a+ +   +lae+
  KIR61109.1 102 DwdrAWRVNVLAHVHSTRAVLPGMLARGQGYLLHTCSAAGLLTAVGDAPYTATKHAAVGLAEW 164
                 422245555556666666666666668899**********************99888777776 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.5   3.1e-07   0.00039       2      64 ..       9      77 ..       8     140 .. 0.76
   2 ?   -1.1   0.0       0.8     1e+03     140     160 ..     149     169 ..     144     184 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.1e-07
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC....EEEE--TT-HHHHHHHHHHH..T CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl....elveldltdrsalerlfkee..q 64
                ++tG++G iG+al+++++++g   ++++    + ++a  + +    +   ld+t ++++++l++++  +
  KIR61109.1  9 VITGGAGGIGAALAHRFAAEGAAAVVVADFDADAARAVAAAVgpvaHAAGLDVTVEEQVRALVADTerR 77
                79*******************885555555455555555555799999**************9987434 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.8
                 SHHHHHHHHHHHHHHHHHHHH CS
   Epimerase 140 spYaaaKlageklveayaaqy 160
                  pY a+K+a+  l+e +a +y
  KIR61109.1 149 APYTATKHAAVGLAEWLAVTY 169
                 599999999755555444444 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   1.0   2.5e-07   0.00032       5      70 ..      13      74 ..       8      96 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.5e-07
                     --SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS CS
  Sacchrp_dh_NADP  5 GaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg 70
                     GaG++G a+a+  a+++     ++vad++ + ++a+aa+  g+ ++a+ ld+  +e+ + al++++
       KIR61109.1 13 GAGGIGAALAHRFAAEGAA--AVVVADFDADAARAVAAA-VGPVAHAAGLDVTVEEQ-VRALVADT 74
                     77***************99..9**********8888765.8999********99999.88888765 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   1.2   2.1e-06    0.0027       1      52 [.       6      56 ..       6      75 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.1e-06
                   EEEEE..TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEEC CS
  F420_oxidored  1 kigii..GaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvta 52
                   ++++i  GaG +g+ala++++a+g  +  +vva + + + a++ a+++g+ + a
     KIR61109.1  6 RVAVItgGAGGIGAALAHRFAAEG--AAAVVVA-DFDADAARAVAAAVGPVAHA 56
                   6899999*****************..7788877.************99944433 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.1   4.2e-05     0.053       4      69 ..       9      73 ..       6     100 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.2e-05
                EEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS-EEEEESSGGGGTT CS
     Ldh_1_N  4 avvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistflsvkvkvsekeeealkd 69
                +++G aGgiG++la+  a+++ a  +++ D++ +++++va+ +  ++  +  +v v+e+  + ++d
  KIR61109.1  9 VITGGAGGIGAALAHRFAAEGAAA-VVVADFDADAARAVAAAVGPVAHAAGLDVTVEEQVRALVAD 73
                478999**************9999.99*****9999999998877766666666666555554444 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.6     8e-05       0.1       5      54 ..      13      63 ..       8      74 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8e-05
                S-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHH CS
      TrkA_N  5 GlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgdatdeev 54
                G+G +G +la+++ + g   vvv d d ++++ +++   +v ++ + d  v
  KIR61109.1 13 GAGGIGAALAHRFAAeGAAAVVVADFDADAARAVAAAVGPVAHAAGLDVTV 63
                89*************66677***************9998888877766655 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.5   8.8e-05      0.11      24      51 ..      12      39 ..       4      40 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.8e-05
                E--SHHHHHHHHHHHHHTTTEEEEEESS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 24 vGaGglGsellknLalsGvgkltlvDnD 51
                 GaGg+G  l++ +a+ G   + ++D+D
  KIR61109.1 12 GGAGGIGAALAHRFAAEGAAAVVVADFD 39
                4**************************9 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.8e-05     0.075       2      52 ..       9      59 ..       8     121 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.8e-05
                     EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTE CS
  Polysacc_synt_2  2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkkl 52
                     ++tG++G iG +l ++++++ ++ +++ + d  +  +++  +   +++  l
       KIR61109.1  9 VITGGAGGIGAALAHRFAAEGAAAVVVADFDADAARAVAAAVGPVAHAAGL 59
                     69*************************999888887777775544444444 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00016       0.2       2      35 ..      10      43 ..       9      78 .. 0.76
   2 ?   -1.8   0.0       1.2   1.5e+03     151     169 ..     149     171 ..     147     177 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00016
                   EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-T CS
  GDP_Man_Dehyd  2 iTGiaGfiGsylaelLlekgyevhgivrrsssfn 35
                   iTG+aG iG+ la+++ ++g   +++ + ++  +
     KIR61109.1 10 ITGGAGGIGAALAHRFAAEGAAAVVVADFDADAA 43
                   9********************9998877666544 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
                    SHHHHHHHH....HHHHHHHHHH CS
  GDP_Man_Dehyd 151 sPYaaaKly....adwivvnyre 169
                     PY a+K +    a+w++v yr+
     KIR61109.1 149 APYTATKHAavglAEWLAVTYRD 171
                    69999998733335888888886 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.8   0.00014      0.18       2      46 ..       7      53 ..       6      82 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
                EEEE..--SCCHHHHHHHHHHTT-.EEEEE-S-HHHHHHHHHHHHHHH CS
     3HCDH_N  2 vavi..GaGtmGagiaavfasagl.eVvlvdiseealekalekieksl 46
                vavi  GaG +Ga +a+ fa++g   Vv+ d +++a++++++++   +
  KIR61109.1  7 VAVItgGAGGIGAALAHRFAAEGAaAVVVADFDADAARAVAAAVGP-V 53
                7777779***************862577888888887777766654.4 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00019      0.24       3      63 ..       7      69 ..       5      92 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
                    EEEE..--STTHHHHHHHHHHCT.SEEEEE-S-HHHHHHHCTTS-SS--.TTHHHHHHHHCHTTT CS
  UDPG_MGDP_dh_N  3 isvi..GlGYvGlvtaavlaeig.hevigvDideekvdklnsgkipiye.pgLeelvkkavesgr 63
                    ++vi  G+G +G+  a  +a+ g   v++ D d+ + +++ +   p+ +  gL+  v+++v  + 
      KIR61109.1  7 VAVItgGAGGIGAALAHRFAAEGaAAVVVADFDADAARAVAAAVGPVAHaAGLDVTVEEQV--RA 69
                    5666559****************8899999*************999988358999999888..33 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.0   0.00027      0.34       4      81 ..       9     113 ..       6     121 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00027
                    EEESTTSHHHHHHHHHCTTTSEEEEEE-TT...................T--TTSHHHHHHHHHHH--S......EEEE------..HHHHHHSHH CS
  RmlD_sub_bind   4 lvtGanGqlGseLakqlaeeglevlaltre...................eldltdaeavaellkeakpd......vvvnaAAyta..vDkaEseee 72 
                    ++tG+ G +G +La+++a+eg++++ +                       ld+t +e+v++l+++++ +      +  na+  ta   D+a  + +
     KIR61109.1   9 VITGGAGGIGAALAHRFAAEGAAAVVVADFdadaaravaaavgpvahaaGLDVTVEEQVRALVADTERRyghidlFCANAGVATAagLDAADADWD 104
                    79******************9877766333456777777777777777777777777777777666654444444455665555533477777777 PP

                    HHHHHHTHH CS
  RmlD_sub_bind  73 aayavnaea 81 
                    +a +vn+ a
     KIR61109.1 105 RAWRVNVLA 113
                    777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2014.27
//
Query:       KIR61110.1  [L=803]
Description: transglutaminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-20   71.6   0.0    1.4e-19   70.6   0.0    1.6  1  Transglut_core   Transglutaminase-like superfamily
  ------ inclusion threshold ------
       0.11   12.5   0.1       0.21   11.5   0.1    1.4  1  DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau do


Domain annotation for each model (and alignments):
>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   1.6e-23   1.4e-19       1     112 []     440     555 ..     440     555 .. 0.93

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 1.6e-23
  Transglut_core   1 ralaeeltagakdplekakaiyewvrknveys.aprrtpgsrdaeavle......tgkGncedfaslfvallRalGipaRvvtgylsgeeekeqs 88 
                     r+la++l +   +p+++a+ai+++++++++++ ++++++++ +++ +l+       ++G++e+fa++f++l R +G+p+Rvv+g+ s+ +    +
      KIR61110.1 440 RRLAAQLAEDNGAPYARAAAIEQFLAEHYRVVaDAPSGHAYPNLNFFLFgprnggGQRGTSEQFAAAFAVLGRLSGLPTRVVVGFSSNGNG---P 531
                     57999**9************************99999999999******877766666***************************997544...7 PP

  Transglut_core  89 vasedaHawvevylegygWvplDp 112
                     v++ da aw+ev + g gWv++Dp
      KIR61110.1 532 VRAADAFAWPEVLFSGLGWVAFDP 555
                     ***********************9 PP

>> DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   2.4e-05      0.21      31      80 ..     719     770 ..     708     785 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.4e-05
  DNA_pol3_gamma3  31 aaalaelre..qyaaGadpvvvlrdLlellhqltllkvlpeaaedlslpeee 80 
                      ++ala++r+  + a  +dp +v  dL+el+  l +l ++p aa++++ + + 
       KIR61110.1 719 REALAVTRTarATAGAVDPGAVPPDLAELAGLLNRLAFAPGAAANEQADRAA 770
                      45566555511456679***********************878776544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 5129.03
//
Query:       KIR61111.1  [L=391]
Description: hypothetical protein TK50_25410 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-21   75.0   0.1    8.7e-21   74.0   0.1    1.6  1  DUF58     Protein of unknown function DUF58
  ------ inclusion threshold ------
       0.01   16.1   0.0      0.019   15.2   0.0    1.4  1  CARDB     CARDB
      0.027   14.3   0.0      0.075   12.9   0.0    1.8  1  DUF1731   Domain of unknown function (DUF1731)


Domain annotation for each model (and alignments):
>> DUF58  Protein of unknown function DUF58
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.1   1.5e-24   8.7e-21       2      86 .]     185     268 ..     184     268 .. 0.95

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 1.5e-24
       DUF58   2 ldfaglReYvpgDplrrIdWkatARtgelyvrefeaerartvllvldlspemslgstgdekletavsaaaslarqlldegdrvgl 86 
                 + f++lReYv gD+lrr++W+++AR gel+vre   ++ ++++++ld+++ ++ g ++ e++e a++aaas+++ +l++  +v+l
  KIR61111.1 185 ITFDSLREYVVGDELRRVHWRTSARVGELMVRENVDTSLPRIVVLLDNRATAHPGRDP-ESFESACEAAASVVAAALRADLPVSL 268
                 6799************************************************998875.*******************9999976 PP

>> CARDB  CARDB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   3.1e-06     0.019       2      72 ..      51     120 ..      50     129 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.1e-06
                 --EEE.EEEC-SEEETTSEEEEEEEEEE-SSS-EEEEEEEEEETTEEEEEEEESEE-CTEEEEEEEEEE-S CS
       CARDB   2 pDLtvtntlnpseafvgeentitvtvkNqGtaasgatkvalyldgelvgtvtvpsLaagesttvsftwtte 72 
                 p L+vt  + p+ ++ ge  ++ +tv+N G   + +  ++    + +v  v+v  L +g  ttv++ ++t+
  KIR61111.1  51 PRLEVTRRADPDRVSRGEPARMVLTVRNAGRLRAANLLAEDRCGDRTVP-VPVLRLRPGRDTTVDYDVPTD 120
                 89**********************************9999999999965.9999************99998 PP

>> DUF1731  Domain of unknown function (DUF1731)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.3e-05     0.075      24      40 ..      13      29 ..       8      31 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
     DUF1731 24 lPkrLleaGFqFrypdl 40
                   +Ll+aGF+F yp+l
  KIR61111.1 13 AAVVLLAAGFRFAYPEL 29
                56689***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2529.51
//
Query:       KIR61112.1  [L=337]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-62  209.4   0.0    2.3e-62  208.7   0.0    1.3  1  AAA_3            ATPase family associated with various cellul
      4e-18   65.0   2.1      4e-18   65.0   2.1    2.1  2  AAA_lid_2        AAA lid domain
      5e-15   55.7   0.0    7.6e-15   55.1   0.0    1.3  1  AAA_5            AAA domain (dynein-related subfamily)
    1.4e-06   28.7   0.0    3.2e-06   27.6   0.0    1.6  1  AAA              ATPase family associated with various cellul
    2.7e-05   23.9   0.0      0.012   15.3   0.0    2.2  2  Sigma54_activat  Sigma-54 interaction domain
    5.2e-05   23.0   0.0    0.00052   19.8   0.0    2.1  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00023   20.3   0.0    0.00055   19.1   0.0    1.6  1  MCM              MCM P-loop domain
     0.0016   17.9   0.2       0.38   10.1   0.1    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.024   15.0   0.0      0.088   13.2   0.0    1.8  2  AAA_16           AAA ATPase domain
      0.036   13.2   0.0      0.043   12.9   0.0    1.2  1  GHL10            Glycosyl hydrolase-like 10
      0.043   13.9   0.0        0.1   12.7   0.0    1.6  1  AAA_2            AAA domain (Cdc48 subfamily)
      0.053   13.4   0.0        1.3    8.9   0.0    2.2  2  CPT              Chloramphenicol phosphotransferase-like prot
       0.13   12.2   0.1        1.3    8.9   0.0    2.4  3  NTPase_1         NTPase
       0.22   11.2   2.2        1.6    8.4   0.1    3.0  4  AAA_30           AAA domain
       0.23   12.0   0.0       0.34   11.5   0.0    1.3  1  AAA_18           AAA domain


Domain annotation for each model (and alignments):
>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.7   0.0   1.9e-65   2.3e-62       1     131 []      49     179 ..      49     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 208.7 bits;  conditional E-value: 1.9e-65
       AAA_3   1 hvllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanllladeinrappktqsalleameerqvtvegethk 99 
                 hvlle+vPG++kt+l++a+a +++ +++riqftpdllPsd+ G+++f+++++ fef++Gpvfan+++adeinra+pktqsalle+meer+vtv+g +h+
  KIR61112.1  49 HVLLEDVPGVGKTTLARAIAATVKGRWRRIQFTPDLLPSDVSGVTIFNQATRGFEFHPGPVFANIVIADEINRASPKTQSALLEVMEERTVTVDGVRHP 147
                 9************************************************************************************************** PP

       AAA_3 100 lpepflvlatqnPieqeGtyplpeaqldrfll 131
                 +p+pflv+atqnP+e++Gty lpeaqldrfl+
  KIR61112.1 148 VPQPFLVVATQNPVEMDGTYRLPEAQLDRFLV 179
                 ******************************95 PP

>> AAA_lid_2  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.3       3.5   4.2e+03      25      27 ..      63      65 ..      40      72 .. 0.54
   2 !   65.0   2.1   3.3e-21     4e-18       2      72 ..     241     312 ..     240     313 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.5
   AAA_lid_2 25 aAr 27
                 Ar
  KIR61112.1 63 LAR 65
                344 PP

  == domain 2  score: 65.0 bits;  conditional E-value: 3.3e-21
   AAA_lid_2   2 atrahlaielgvsgrRadlallraArAlAalegrdyVtpeDvkeaaplVLaHRlr..repeaegetteeivee 72 
                 atr+h+++++gvs+r + +al+raA A+A+++gr  + peD+k++a++V+aHRl    +++  g+++ e++++
  KIR61112.1 241 ATRVHPQVRVGVSPR-GVIALTRAACAYALIDGRGWIMPEDLKALAEPVFAHRLLltSDAQVRGVSAAEVLRQ 312
                 8**************.***************************************999999999999999886 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   6.4e-18   7.6e-15       1     138 []      49     177 ..      49     177 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 6.4e-18
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--...........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik..ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllle 97 
                 +vlL   pG+gK++la+ +aa ++ ++  +q+t d+ ++d+ g + ++   ++ +++++p+      + i++ DE++ra+++++++Ll ++eer++ ++
  KIR61112.1  49 HVLLEDVPGVGKTTLARAIAATVKGRWRRIQFTPDLLPSDVSGVTIFNqaTRGFEFHPGPVF-----ANIVIADEINRASPKTQSALLEVMEERTVTVD 142
                 6888889**************************************999889999********.....9*****************************77 PP

                 -SSSEEE---......-EEEEEESS--..-TT-TTHHHHTT- CS
       AAA_5  98 eggelvkaknddllerfrviatanpld.rslnelspalrsRf 138
                   ++ v  ++      f v+at np++  +  +l +a ++Rf
  KIR61112.1 143 GVRHPV-PQP------FLVVATQNPVEmDGTYRLPEAQLDRF 177
                 766666.444......***********888888999999988 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   2.7e-09   3.2e-06       2     130 ..      51     183 ..      50     185 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 2.7e-09
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEET.TTCS.SSSTTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisg.sell.skyvgesekkirelfkeakeka.......kpsilfiDEidalaksrsgseseeeervvnqLlt 91 
                 ll   pG+GKT+la+a+a +++ +  +i+  ++ll s++ g +      +f++a +            i++ DEi +  ++            +++Ll+
  KIR61112.1  51 LLEDVPGVGKTTLARAIAATVKGRWRRIQFtPDLLpSDVSGVT------IFNQATRGFefhpgpvFANIVIADEINRASPKT-----------QSALLE 132
                 67778****************9998888852566633333333......3333322223334444348**********9999...........****** PP

                 HHHHTTTS........SSTEEEEEEESS.....GGGSTHHHHSTTSSEEEET CS
         AAA  92 eldgvkkk........eskvivigatnr.....pdkldpallrgRfdrkiei 130
                 ++++ +           ++++v+++ n        +l++a l +Rf +k+ +
  KIR61112.1 133 VMEERTVTvdgvrhpvPQPFLVVATQNPvemdgTYRLPEAQL-DRFLVKLSV 183
                 ******9999**999966688888877755444445777777.777777665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0064       7.6      12      46 ..      37      71 ..      32      92 .. 0.82
   2 !   15.3   0.0   9.9e-06     0.012      97     142 ..     114     159 ..     109     170 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0064
                     HHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat 12 leqikkvaktdlsvlitGesGtGKellaraiheas 46
                     ++ + ++   + +vl++   G+GK++larai ++ 
       KIR61112.1 37 VRLALTALFAQGHVLLEDVPGVGKTTLARAIAATV 71
                     5555566667789*****************98754 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 9.9e-06
                      EEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEES CS
  Sigma54_activat  97 lfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatn 142
                      +  Dei++ ++++Q+ Ll+v++e++v+  G +++++  + ++a+ n
       KIR61112.1 114 VIADEINRASPKTQSALLEVMEERTVTVDGVRHPVPQPFLVVATQN 159
                      567************************9999999998887776543 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.3e-07   0.00052      32     113 ..      46     139 ..      35     145 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.3e-07
      RuvB_N  32 aldhvllyGpPGlGkttlakiiakelgvklk.itsgPvlekagdlaa..lltnleek..........dvlfideihrlsraveevlysamedfrl 113
                 a  hvll   PG+Gkttla+ ia+ ++ + + i  +P l  ++d+++  ++++ +++          +++  dei r s++++  l   me+ ++
  KIR61112.1  46 AQGHVLLEDVPGVGKTTLARAIAATVKGRWRrIQFTPDLL-PSDVSGvtIFNQATRGfefhpgpvfaNIVIADEINRASPKTQSALLEVMEERTV 139
                 567*********************9998876144566553.344433104443322111112222225667788888888888888777777665 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.6e-07   0.00055      57     174 ..      47     161 ..      28     173 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.6e-07
                 S-EEEEEESSTSTHHHHHHHHHHHSS....SEEEEESSSSSSSHSSSEEEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEE CS
         MCM  57 dinvllvgdpgtaKsqlLkyveklap....ravytsgkgssaagLtaavvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtis 151
                 + +vll   pg++K++l ++++++++    r ++t     s  +       +++t+ f ++ G +      +++ De+++ + +++sal+E+mE+ t++
  KIR61112.1  47 QGHVLLEDVPGVGKTTLARAIAATVKgrwrRIQFTPDLLPS--DVSGVTIFNQATRGFEFHPGPVFA---NIVIADEINRASPKTQSALLEVMEERTVT 140
                 66888888888888888888876554111133344333323..333333346788888899998764...4999************************9 PP

                 EESSSCEEEEE--EEEEEEE--S CS
         MCM 152 iaKaGivatLnartsvlaAanpk 174
                 +   G+   ++    v+a  np+
  KIR61112.1 141 VD--GVRHPVPQPFLVVATQNPV 161
                 96..7778788777777777776 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   0.00032      0.38       5      44 ..      30      69 ..      27      74 .. 0.85
   2 !    5.6   0.0    0.0076       9.1     109     160 ..     113     162 ..     101     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00032
  Mg_chelatase  5 vkGqeeakraleiaaaGgHnlllvGppGsGKtmlakrlps 44
                  v G+ +  r    a   + ++ll   pG GKt la+++++
    KIR61112.1 30 VLGKPQVVRLALTALFAQGHVLLEDVPGVGKTTLARAIAA 69
                  67888888888888888899****************9875 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0076
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcp 160
                   +++ DE+   + k+  +L e +e+++vt+   ++ v  p  f +va+ Np  
    KIR61112.1 113 IVIADEINRASPKTQSALLEVMEERTVTVDGVRHPV--PQPFLVVATQNPVE 162
                   6778*************************9998877..77799******976 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   7.4e-05     0.088      25      75 ..      48      97 ..      35     106 .. 0.77
   2 ?   -2.1   0.0       3.5   4.2e+03     138     161 ..     113     136 ..     106     155 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.4e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqa 75
                + vll   +GvGK++l+r+++  ++++ +  ++ + d l+s+++ +++ ++
  KIR61112.1 48 GHVLLEDVPGVGKTTLARAIAATVKGR-WRRIQFTPDLLPSDVSGVTIFNQ 97
                567777789************988888.88899888888777666554444 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.5
      AAA_16 138 vlvlDdlqwadeaslqllaaLlrl 161
                 +++ D++ +a + ++++l + +++
  KIR61112.1 113 IVIADEINRASPKTQSALLEVMEE 136
                 678899999999999987666655 PP

>> GHL10  Glycosyl hydrolase-like 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.6e-05     0.043     218     286 ..     243     313 ..     166     333 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.6e-05
       GHL10 218 avkPnvkisvsPagvwn...laydeflaDtrrWiekgvideivlqvYreklaafaaeldvlakreskevkpt 286
                  v P+v+++vsP gv     +a    l D r Wi  +++  ++  v+ ++l   + + +v  +  +++++  
  KIR61112.1 243 RVHPQVRVGVSPRGVIAltrAACAYALIDGRGWIMPEDLKALAEPVFAHRL-LLTSDAQVRGVSAAEVLRQA 313
                 489************9645566677889***************99999854.45555666655555555544 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.7e-05       0.1       5     109 ..      49     140 ..      46     163 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.7e-05
                 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS......EEEEETGGG-------------HHHHH CS
       AAA_2   5 silllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG......ivllDEidKihpkessgadvSregVqr 97 
                  +ll +  gvGkt la+a+a + +     +  r+  +  l      + vs  ++ +++  g+e +       iv  DEi +++p             q 
  KIR61112.1  49 HVLLEDVPGVGKTTLARAIAATVKG----RWRRIQFTPDLL----PSDVSGVTIFNQATRGFEFHPgpvfanIVIADEINRASP-----------KTQS 128
                 677888899***********99984....889999999888....99999999999999999987679****************...........99** PP

                 HHHHHHH--EE- CS
       AAA_2  98 dLLqileggtlt 109
                 +LL ++e+ t+t
  KIR61112.1 129 ALLEVMEERTVT 140
                 *******99998 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0011       1.3       4      33 ..      50      79 ..      48     105 .. 0.90
   2 ?    2.0   0.0      0.14   1.6e+02      85     120 ..     113     148 ..     110     154 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
                EEEEE-TTSSHHHHHHHHHHHSSS-EEEEE CS
         CPT  4 ilLnGgsssGKsslaralqevldepwlhlg 33
                +lL+ ++  GK++lara+ +++++ w  ++
  KIR61112.1 50 VLLEDVPGVGKTTLARAIAATVKGRWRRIQ 79
                799999********************8776 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.14
                 EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--H CS
         CPT  85 nvivDdvilekewlvdllrrllsgldvllVGvrcpl 120
                  vi+D++     + + +l +++++  v + Gvr p+
  KIR61112.1 113 IVIADEINRASPKTQSALLEVMEERTVTVDGVRHPV 148
                 4889999888888888888*********99***987 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0011       1.3       2      26 ..      50      74 ..      49      79 .. 0.82
   2 ?   -0.2   0.0       0.7   8.3e+02      97     138 ..     112     150 ..     108     162 .. 0.73
   3 ?   -2.7   0.0         4   4.8e+03      22      40 ..     293     311 ..     290     313 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
                EEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkss 26
                v++   pGvGKtTl + ++ ++k +
  KIR61112.1 50 VLLEDVPGVGKTTLARAIAATVKGR 74
                666778*************999865 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.7
                 -EEEE---STTGGG-HHHHHHHHHHHTTTSEEEEE--SS--S CS
    NTPase_1  97 dviviDEiGkmElkskkfkeaveevLksekpvlavihrrkdl 138
                 ++++ DEi      s+k ++a+ ev+++ ++ +  ++++ ++
  KIR61112.1 112 NIVIADEI---NRASPKTQSALLEVMEERTVTVDGVRHPVPQ 150
                 56777777...4578888888888888888888777776644 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4
                 HH...GGGEEEEEEEEE-- CS
    NTPase_1  22 llkssgvkvgGfyteevre 40 
                 ll  s+ +v+G+ + ev +
  KIR61112.1 293 LLLTSDAQVRGVSAAEVLR 311
                 56678899*****999976 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0014       1.6      10      45 ..      41      74 ..      35     103 .. 0.84
   2 ?    0.4   0.0      0.37   4.5e+02      90     119 ..     112     141 ..      87     144 .. 0.89
   3 ?   -2.7   0.0       3.5   4.1e+03     145     179 ..     157     191 ..     152     199 .. 0.81
   4 ?   -0.6   0.1      0.79   9.5e+02      93     141 ..     269     314 ..     211     320 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
      AAA_30 10 vealltsgdrvavltGpAGtGKttalkalreaweaa 45
                ++al ++g+  ++l+ ++G GKtt+ +a++++++ +
  KIR61112.1 41 LTALFAQGH--VLLEDVPGVGKTTLARAIAATVKGR 74
                556666664..89999*************9987755 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.37
      AAA_30  90 tllivDEagmvdtkqlaallkaaekagakv 119
                 +++i DE+  ++ k+  all+ +e++ ++v
  KIR61112.1 112 NIVIADEINRASPKTQSALLEVMEERTVTV 141
                 68999*****************99977665 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.5
      AAA_30 145 gigtaeLtevvRqkeseeraaalalregdaeeale 179
                 +++ +e++  +R  e++  +   +l+ g ++ea+e
  KIR61112.1 157 TQNPVEMDGTYRLPEAQLDRFLVKLSVGYPDEAVE 191
                 67789999999999999999999999999988876 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.79
      AAA_30  93 ivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlv 141
                 ++D  g +  ++l+al++ + +   +++l   ++Q   V+a +vlr+ v
  KIR61112.1 269 LIDGRGWIMPEDLKALAEPVFA--HRLLLTS-DAQVRGVSAAEVLRQAV 314
                 4555555555555555555544..4444444.46888888888888876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00028      0.34       6      21 ..      55      70 ..      50     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00028
      AAA_18  6 tpGvGKttlakeLskr 21
                +pGvGKttla++++  
  KIR61112.1 55 VPGVGKTTLARAIAAT 70
                8***********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2282.38
//
Query:       KIR61113.1  [L=877]
Description: fibronectin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-30  105.3   6.7    7.2e-10   39.1   0.0    5.3  4  fn3              Fibronectin type III domain
    2.2e-10   41.0   8.9     0.0031   18.1   2.2    5.1  3  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
    0.00011   22.5   0.5       0.56   10.6   0.1    3.5  3  DUF4959          Domain of unknown function (DUF4959)
    0.00096   19.1   0.5       0.23   11.5   0.2    3.1  3  Arylsulfotran_N  Arylsulfotransferase Ig-like domain
  ------ inclusion threshold ------
      0.055   13.9   0.0        6.5    7.2   0.0    3.3  3  DUF2369          Uncharacterised conserved protein (DUF2369)
      0.074   12.2   0.0       0.12   11.5   0.0    1.2  1  Apyrase          Apyrase
       0.14   12.7   3.9        5.4    7.6   0.0    3.2  3  TQ               T-Q ester bond containing domain
        5.1    7.4   8.7        8.8    6.6   0.8    4.3  4  CARDB            CARDB
        5.7    7.0  13.4       0.26   11.3   5.1    2.8  3  PRIMA1           Proline-rich membrane anchor 1


Domain annotation for each model (and alignments):
>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   3.6e-13   7.2e-10       1      84 [.     417     492 ..     417     493 .. 0.91
   2 !   24.1   0.0   1.7e-08   3.3e-05       1      82 [.     506     585 ..     506     589 .. 0.85
   3 !   22.1   0.1   7.1e-08   0.00014       2      82 ..     603     676 ..     602     679 .. 0.83
   4 !   19.5   0.2   4.6e-07   0.00092      51      83 ..     730     761 ..     687     763 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 3.6e-13
                 TCECEEEEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTSTEEEEEECSTSSEEEEESSSTTEEEEEEEEEEETSEEEEE CS
         fn3   1 saPsnlsvsevtstsltvsWeppkdgggpitgYeveyrekgseeewneftvprtttsvtltgLkpgteYevrVqavngggegpe 84 
                 saP+ +++s+ ++  ++vsW p    g++i +Y v    +g +    ++ v ++++sv++tgL+ g++Y+++V+avn++g gp 
  KIR61113.1 417 SAPRSVTASA-GNARARVSWRPAAANGAEIIRYVV----EGAG---ERREVGANQRSVEVTGLTNGETYRFSVHAVNAKGDGPA 492
                 79********.999*********************....3333...4788999999************************9985 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 1.7e-08
                 TCECEEEEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTSTEEEEEECSTSSEEEEESSSTTEEEEEEEEEEETSEEE CS
         fn3   1 saPsnlsvsevtstsltvsWeppkdgggpitgYeveyrekgseeewneftvprtttsvtltgLkpgteYevrVqavngggeg 82 
                 ++Ps+++++++ + ++ v+W + + +g +i +Y v+  + g +        ++t+  v    L  gt+Y ++V +vn+ g g
  KIR61113.1 506 DPPSGVTAEARPDGTVLVKWPAANGQGNTIAKYAVTANSAGANA--PAGESSKTELVVPAGELDYGTQYAFTVVSVNDRGAG 585
                 69*********************99999************9997..4444444444677778*****************966 PP

  == domain 3  score: 22.1 bits;  conditional E-value: 7.1e-08
                 CECEEEEEEE..SSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTSTEEEEEECSTSSEEEEESSSTTEEEEEEEEEEETSEEE CS
         fn3   2 aPsnlsvsev..tstsltvsWeppkdgggpitgYeveyrekgseeewneftvprtttsvtltgLkpgteYevrVqavngggeg 82 
                 aP +l++++v  ++ ++ v+W+p    g+p+t+Y v+           +  v+ +t ++t+ gL  g+  +v+V+avn++g g
  KIR61113.1 603 APVDLRATTVanRPGTVAVQWSPAAANGRPVTKYLVDAGGR-------SSEVT-DT-RATVDGLGDGQSVTVTVKAVNEAGPG 676
                 799999999999************************43333.......22333.33.588********************876 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 4.6e-07
                 ECSTSSEEEEESSSTTEEEEEEEEEEETSEEEE CS
         fn3  51 vprtttsvtltgLkpgteYevrVqavngggegp 83 
                 + + + s+t++gL+pgt Y+ +V+a n++geg 
  KIR61113.1 730 ARNCA-SATVPGLTPGTAYTATVTASNAAGEGT 761
                 33344.99*********************9986 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   6.2e-05      0.12      14      83 ..     429     485 ..     419     499 .. 0.73
   2 !    8.5   0.1    0.0015         3      10      89 ..     515     591 ..     508     595 .. 0.79
   3 !   18.1   2.2   1.5e-06    0.0031       7      83 ..     611     755 ..     604     768 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.2e-05
  Pur_ac_phosph_N  14 tsmtvsWitpektkksvvrygtssdalestaeatsstyettnyksgyshkatltgLepgttYyYrvgdde 83 
                         +vsW+  ++++++++ry  +   +++++ a++              ++++tgL+ g tY ++v + +
       KIR61113.1 429 ARARVSWRPAAANGAEIIRYVVEGAGERREVGANQ-------------RSVEVTGLTNGETYRFSVHAVN 485
                      67789999999999999999999988887776665.............4678888888888888885543 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0015
  Pur_ac_phosph_N  10 edtstsmtvsWitpektkksvvrygtssdalestaeatsstyettnyksgyshkatltgLepgttYyYrvgddeg.....gwSev 89 
                      + ++ ++ v W   + +++++++y+ + ++   +a+a +s        s     + + +L+ gt+Y + v + ++     + S+v
       KIR61113.1 515 ARPDGTVLVKWPAANGQGNTIAKYAVTANSAGANAPAGES--------SKTELVVPAGELDYGTQYAFTVVSVNDrgagsAASPV 591
                      5577899999999999999999999999999888887764........56677799999***********887665555566665 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 1.5e-06
  Pur_ac_phosph_N   7 sltedtstsmtvsWitpektkksvvrygtssdalestaeatsstyet............................................... 53 
                      ++++  + +++v+W   ++++++v +y  + +  +s+++ t  t++                                                
       KIR61113.1 611 TVAN-RPGTVAVQWSPAAANGRPVTKYLVDAGGRSSEVTDTRATVDGlgdgqsvtvtvkavneagpgaaatanartvapprvtvtgssatatav 703
                      4444.999*******************************99999999*********************************************** PP

  Pur_ac_phosph_N  54 ......................tnyksgyshkatltgLepgttYyYrvgdde 83 
                                            +  + +++ +at+ gL+pgt Y   v + +
       KIR61113.1 704 tvnftvdagggqatctvsvpgeKPVTARNCASATVPGLTPGTAYTATVTASN 755
                      *********************99999******************99887765 PP

>> DUF4959  Domain of unknown function (DUF4959)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0     0.002       3.9      18      95 ..     415     489 ..     407     503 .. 0.72
   2 !   10.6   0.1   0.00028      0.56      18      95 ..     603     675 ..     599     688 .. 0.75
   3 ?   -1.0   0.0       1.1   2.2e+03      15      43 ..     697     725 ..     678     729 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
     DUF4959  18 aPgkvtnvkvknlpGgavisytlPddedLlyvkaeYklknGkerevkaSvykdsltveGFgdtkeyevklyavsrsen 95 
                 +P +   v+  + +  a +s++  + +    +  +Y + +G  +  ++   ++s++v G+++ ++y ++++av+ +++
  KIR61113.1 415 KPSAPRSVTASAGNARARVSWRPAAANGAEII--RYVV-EGAGERREVGANQRSVEVTGLTNGETYRFSVHAVNAKGD 489
                 66666666777777777777776666655554..4554.3666667778899**********************9875 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00028
     DUF4959  18 aPgkvtnvkvknlpGgavisytlPddedLlyvkaeYklknGkerevkaSvykds.ltveGFgdtkeyevklyavsrsen 95 
                 aP  +  ++v n pG + ++++ P+  +   v  +Y ++ G     ++S  +d+ +tv+G+gd ++++v+++av++++ 
  KIR61113.1 603 APVDLRATTVANRPGTVAVQWS-PAAANGRPV-TKYLVDAG----GRSSEVTDTrATVDGLGDGQSVTVTVKAVNEAGP 675
                 5666677788888888888886.445555555.46776666....5777777777********************9875 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.1
     DUF4959  15 dkaaPgkvtnvkvknlpGgavisytlPdd 43 
                  ++a +   n +v +  G+a+ ++++P +
  KIR61113.1 697 SATATAVTVNFTVDAGGGQATCTVSVPGE 725
                 34555566677888888888888888765 PP

>> Arylsulfotran_N  Arylsulfotransferase Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.021        42      46      78 ..     458     490 ..     429     502 .. 0.74
   2 ?   -1.8   0.0       1.7   3.4e+03      21      46 ..     645     669 ..     637     674 .. 0.75
   3 !   11.5   0.2   0.00012      0.23      16      78 ..     691     760 ..     678     770 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.021
  Arylsulfotran_N  46 qqylkthgipvfGLypdytNtvtvtitkeagkt 78 
                      +  ++++ + v GL   +t++ +v+  + +g+ 
       KIR61113.1 458 EVGANQRSVEVTGLTNGETYRFSVHAVNAKGDG 490
                      44566666*****************99988875 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.7
  Arylsulfotran_N  21 deitsvtvtvvgkgkkgqditytvdq 46 
                      +e+t+   tv g  ++gq++t tv++
       KIR61113.1 645 SEVTDTRATVDGL-GDGQSVTVTVKA 669
                      6778888888888.888888888764 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00012
  Arylsulfotran_N  16 ikfetdeitsvtvtvvgk.gkkgqditytvd....qqylkthg....ipvfGLypdytNtvtvtitkeagkt 78 
                      ++++++ +t   vtv+   ++ g + t tv+    ++ +          v GL p +++t tvt  + ag+ 
       KIR61113.1 691 VTVTGSSATATAVTVNFTvDAGGGQATCTVSvpgeKPVTA--RncasATVPGLTPGTAYTATVTASNAAGEG 760
                      5556666666666666666677777777777444333333..2469999******************98886 PP

>> DUF2369  Uncharacterised conserved protein (DUF2369)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0033       6.5       6      31 ..     463     488 ..     459     511 .. 0.84
   2 ?    1.6   0.0      0.19   3.8e+02      12      37 ..     564     589 ..     554     613 .. 0.81
   3 ?   -0.1   0.0      0.64   1.3e+03       8      28 ..     735     755 ..     729     767 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0033
     DUF2369   6 ktkvtlseLkpdtqYyfdVFvvdqkr 31 
                 +++v +++L+ +++Y+f+V +v+ k 
  KIR61113.1 463 QRSVEVTGLTNGETYRFSVHAVNAKG 488
                 478899*****************875 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.19
     DUF2369  12 seLkpdtqYyfdVFvvdqkrntssay 37 
                 +eL+ +tqY f+V  v+ +   s+a 
  KIR61113.1 564 GELDYGTQYAFTVVSVNDRGAGSAAS 589
                 68999***********9988777765 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.64
     DUF2369   8 kvtlseLkpdtqYyfdVFvvd 28 
                 + t+ +L+p+t Y  +V + +
  KIR61113.1 735 SATVPGLTPGTAYTATVTASN 755
                 689**********99997766 PP

>> Apyrase  Apyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.1e-05      0.12      48      83 ..     304     339 ..     293     351 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.1e-05
     Apyrase  48 laekgRgmELSeLvvfngkllavdDrtGivyeikee 83 
                 ++  gRg  LS  v++ ++++ +d  tG+vy+ + +
  KIR61113.1 304 FTVPGRGDKLSPAVAWADRFYCADESTGTVYSFDAS 339
                 66779**************************99654 PP

>> TQ  T-Q ester bond containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0027       5.4      29      96 ..     466     541 ..     464     567 .. 0.72
   2 ?    3.8   1.0      0.04        80      21      90 ..     643     716 ..     610     738 .. 0.71
   3 ?   -1.7   0.0       1.9   3.8e+03      32      48 ..     739     757 ..     726     772 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0027
          TQ  29 VayenlkpgeeYtlkgeLvakskkatkdkkgkivtaeqtf.......take.asgevevtfe.vdasalagkklVvf 96 
                 V++++l+ ge+Y+ +   v + k+++ + ++++vt +  +       ta++  +g+v v+ +  + +  + +k+ v+
  KIR61113.1 466 VEVTGLTNGETYRFSVHAV-NAKGDGPARSSNPVTPTAAVpdppsgvTAEArPDGTVLVKWPaANGQGNTIAKYAVT 541
                 899****************.999999999999999999988877777554456777766665333333333344444 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.04
          TQ  21 kaativDt.VayenlkpgeeYtlkgeLv..akskkatkdkkgkivtaeqtftake.asgevevtfevdasalag 90 
                 ++ +++Dt  ++++l +g++ t++ + v  a+ + a+++++ +++  + t+t ++     v+v+f+vda   ++
  KIR61113.1 643 RSSEVTDTrATVDGLGDGQSVTVTVKAVneAGPGAAATANARTVAPPRVTVTGSSaTATAVTVNFTVDAGGGQA 716
                 4556888745678999***9999999998644444444444444444555544442566688999988876555 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.9
          TQ  32 enlkpgeeYtlkgeLv..a 48 
                  +l+pg+ Yt + +    a
  KIR61113.1 739 PGLTPGTAYTATVTASnaA 757
                 5899999999887777321 PP

>> CARDB  CARDB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       6.2   1.2e+04      81      95 ..     374     388 ..     358     392 .. 0.69
   2 ?    1.5   0.0      0.17   3.5e+02      48      71 ..     462     485 ..     427     512 .. 0.85
   3 ?    0.7   0.1      0.31   6.2e+02      50      72 ..     650     672 ..     634     699 .. 0.75
   4 ?    6.6   0.8    0.0044       8.8      16      76 ..     698     760 ..     685     775 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.2
                 EEEESTT-SS--SSC CS
       CARDB  81 tvvvDpdnevaEsnE 95 
                   vvD + +v E n 
  KIR61113.1 374 ARVVDDKHQVREVNK 388
                 446788888888876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.17
                 EEEEEEESEE-CTEEEEEEEEEE- CS
       CARDB  48 lvgtvtvpsLaagesttvsftwtt 71 
                 ++ +v+v++L +ge++  s++ + 
  KIR61113.1 462 NQRSVEVTGLTNGETYRFSVHAVN 485
                 557889999999999999998765 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.31
                 EEEEESEE-CTEEEEEEEEEE-S CS
       CARDB  50 gtvtvpsLaagesttvsftwtte 72 
                 + +tv +L  g+s+tv+++ + e
  KIR61113.1 650 TRATVDGLGDGQSVTVTVKAVNE 672
                 66788888889998888887766 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0044
                 ETTSEEEEEEEEEE-SSS-EEEEEE..EEEETTEEEEEEEESEE-CTEEEEEEEEEE-S-S-C CS
       CARDB  16 fvgeentitvtvkNqGtaasgatkv..alyldgelvgtvtvpsLaagesttvsftwtteateg 76 
                  + +++t+++tv   G +a ++++v  +  +   + +++tvp+L +g+ +t ++t   +a eg
  KIR61113.1 698 ATATAVTVNFTVDAGGGQATCTVSVpgEKPVTARNCASATVPGLTPGTAYTATVTASNAAGEG 760
                 5567788888888888887776666223344455559999**************998775555 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.58   1.2e+03      48      69 ..      11      32 ..       6      42 .. 0.78
   2 ?   11.3   5.1   0.00013      0.26      25      53 ..     397     425 ..     372     437 .. 0.83
   3 ?   -3.0   0.9       3.6   7.2e+03      24      47 ..     493     517 ..     485     527 .. 0.55

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.58
      PRIMA1 48 estvsplepwwselviiiavvc 69
                e+ +s+ + w+ +lv +++v+ 
  KIR61113.1 11 EPGASRRRRWRGGLVTVGTVSA 32
                566777889**********975 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00013
      PRIMA1  25 rypplpppppppppprllsltaaestvsp 53 
                  +pp+ppppppp  p++  ++a++s ++ 
  KIR61113.1 397 DPPPVPPPPPPPKKPKVGKPSAPRSVTAS 425
                 689**************999999987665 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 3.6
      PRIMA1  24 rrypplppppppppppr.llsltaa 47 
                 r+  p+ p +  p pp  + + + +
  KIR61113.1 493 RSSNPVTPTAAVPDPPSgVTAEARP 517
                 5555655555555555404444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (877 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 6490.96
//
Query:       KIR61114.1  [L=127]
Description: hypothetical protein TK50_25430 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      151  (0.00842211); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 893.66
//
Query:       KIR61115.1  [L=295]
Description: hypothetical protein TK50_25440 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-20   72.7   1.3    1.8e-20   72.7   1.3    1.9  2  HTH_1           Bacterial regulatory helix-turn-helix protein
      5e-19   68.5   7.4      5e-19   68.5   7.4    1.8  2  LysR_substrate  LysR substrate binding domain
     0.0014   18.4   0.1     0.0014   18.4   0.1    2.2  2  HTH_30          PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
      0.024   14.5   0.3       0.19   11.6   0.0    2.7  3  MarR_2          MarR family


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   1.3   3.9e-24   1.8e-20       1      59 [.      10      68 ..      10      69 .. 0.97
   2 ?   -3.9   0.4       3.2   1.4e+04      19      25 ..      81      87 ..      76      95 .. 0.54

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 3.9e-24
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                lr++ +f+ vae+ +f rAA +L+++qp++srqi+rLEe+lg++Lf+Rt +g rLT+aG
  KIR61115.1 10 LRLVGYFLVVAEQANFGRAAAALHVAQPSLSRQIQRLEEHLGTRLFDRTPQGSRLTAAG 68
                67888*****************************************************9 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.2
                HHHHHTS CS
       HTH_1 19 AAeeLgl 25
                AA++  +
  KIR61115.1 81 AAQAATV 87
                4444433 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.7      0.13   5.9e+02      87     148 ..      22      84 ..      13      89 .. 0.73
   2 !   68.5   7.4   1.1e-22     5e-19      17     204 ..     104     291 ..      98     293 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.13
                     TSGGGG.SSSECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHT CS
  LysR_substrate  87 dhpLar.gepvsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaa 148
                     +  + r  + ++ ++    + i++ e++   +l+++  + ++l++ +   + ++++l+++++a
      KIR61115.1  22 QANFGRaAAALHVAQPSLSRQIQRLEEHLGTRLFDRTPQGSRLTAAGHAFLPQAQTLMQAAQA 84 
                     444555455556666677777888888888888888888889999999999999999998887 PP

  == domain 2  score: 68.5 bits;  conditional E-value: 1.1e-22
                     HHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGGGCTSEEEEE CS
  LysR_substrate  17 aryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLargepvsledLadeplill 109
                     +  +++ +++r+r r+P  +++ +     +  + l ++++D+ +++ p+  + ++l+ r L+ ep+vlv++++h+La++e+v+ +dLa+e +   
      KIR61115.1 104 SDLVITSAVRRLRHRHPTARIRTRHIGLLDGRA-LTDRRVDALVTRAPLafPTDRLRLRDLWAEPRVLVVHHGHRLAGKESVTVDDLANEAFPRC 197
                     55678899****************999666666.88888*******************************************************9 PP

                     STTSTHHHHHHHHHHCTTEEC..EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCCHHHHHHHHH CS
  LysR_substrate 110 eegsglrdlledalreaglkp..rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrelspavrafid 202
                     +   +++  ++++  + g +p  ++ l  +s++  l++va G  + +l +s  r+ l+ ++l ++p+++  +p++++lv+r+++ ++p+++ f++
      KIR61115.1 198 PSAVTTWNDFDRLEPRPGKAPviDAPLDYESFQDKLDMVAEGRAVLVLAESDRRPTLR-PDLTTVPIKD-IAPSRVVLVTRASD-PNPLIAEFLA 289
                     99999********9999999999999**************************988555.58888*****.888**********9.9999999998 PP

                     HH CS
  LysR_substrate 203 fl 204
                     ++
      KIR61115.1 290 LA 291
                     75 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   3.2e-07    0.0014      10      46 ..      20      56 ..      16      69 .. 0.86
   2 ?   -1.7   1.3      0.58   2.6e+03      15      47 ..     108     140 ..     103     147 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.2e-07
                HTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTS CS
      HTH_30 10 enggnisatAkaLhvHrnTlryRLrrieellgldldd 46
                +++ n  ++A+aLhv   +l+  ++r+ee lg  l d
  KIR61115.1 20 AEQANFGRAAAALHVAQPSLSRQIQRLEEHLGTRLFD 56
                5678999*************************98755 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.58
                 HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSH CS
      HTH_30  15 isatAkaLhvHrnTlryRLrrieellgldlddp 47 
                 i+ + ++L     T r R r+i  l g+ l+d 
  KIR61115.1 108 ITSAVRRLRHRHPTARIRTRHIGLLDGRALTDR 140
                 566778888889999999999999988888875 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.3e-05      0.19      23      47 ..      24      48 ..      14      49 .. 0.87
   2 ?   -3.5   0.0       2.2   9.8e+03      18      29 ..     182     191 ..     173     192 .. 0.68
   3 ?   -2.1   0.0      0.84   3.8e+03       7      21 ..     238     257 ..     236     267 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.3e-05
                EHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 23 tvgelarrlglsksavsrilkrLva 47
                + g  a++l++ ++++sr ++rL++
  KIR61115.1 24 NFGRAAAALHVAQPSLSRQIQRLEE 48
                67889******************98 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.2
                 TTSEEEHHHHHH CS
      MarR_2  18 pgrdltvgelar 29 
                 +   +tv +la 
  KIR61115.1 182 E--SVTVDDLAN 191
                 3..489999985 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.84
                 HHHHHHHHHCTTTS.....E CS
      MarR_2   7 qarvLaaLgrrpgr.....d 21 
                 + r+ ++L+ +++r     d
  KIR61115.1 238 EGRAVLVLAESDRRptlrpD 257
                 66777777777777666663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2048.65
//
Query:       KIR61116.1  [L=241]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-53  180.7   1.0    4.2e-53  180.3   1.0    1.1  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    2.3e-42  144.7   0.2    2.9e-42  144.4   0.2    1.1  1  adh_short     short chain dehydrogenase
      1e-15   58.1   3.9    3.8e-15   56.2   3.9    1.8  1  KR            KR domain
    4.6e-05   22.9   0.0    5.9e-05   22.6   0.0    1.1  1  DUF1776       Fungal family of unknown function (DUF1776)
    0.00096   18.7   0.0       0.03   13.8   0.1    2.2  2  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.3   1.0   1.2e-56   4.2e-53       3     234 .]      15     239 ..      12     239 .. 0.95

  Alignments for each domain:
  == domain 1  score: 180.3 bits;  conditional E-value: 1.2e-56
                   TTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdra 98 
                    sgIG  iA++l + Ga+v++t ++ +a         +++   +++ D+t++++++al+e+v+++fg+lD ++ nag+  + ++pf+ t++e+fd +
    KIR61116.1  15 TSGIGLSIARLLTAGGASVMVTGRSANA---------QIDGViAVRSDATSRADIDALAEQVKDTFGTLDAVFLNAGVPGD-STPFEATTEEDFDAV 101
                   59********************999997.........3344425*************************************.*************** PP

                   HHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTT..HHHHHHHH CS
  adh_short_C2  99 ldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla.asgikg..fdelleel 192
                   ++ n+++ f ++++++ l++e + +v ++sv+ e+++pn +ay+a+Kaal +++r+l +el p+g+RvNavspg i+T +  ++++   +de+ + +
    KIR61116.1 102 FAANVKGPFFTLQRLVGLLAEDSGVVLTTSVANEIGMPNMSAYSASKAALRSMARTLGRELLPRGVRVNAVSPGTIDTGIlHRNLPTevADEMVAGF 198
                   *******************************************************************************9667777677999***** PP

                   HHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 193 earaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   +a+ p+ r+g p+eva+aa+fLa d+ +y+ G +l vDgG+t
    KIR61116.1 199 AAQNPMLRMGHPDEVARAAVFLAFDA-TYTIGFELTVDGGIT 239
                   ************************87.9************97 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.4   0.2   8.1e-46   2.9e-42       1     189 [.       7     184 ..       7     190 .. 0.93

  Alignments for each domain:
  == domain 1  score: 144.4 bits;  conditional E-value: 8.1e-46
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfselse 98 
                 k +lvtG++sGIG+ ia+ l + Ga+v+v++rs++      +++      ++a++ D t+r++++al e++++ +g+ld++  NAG+   s+pf+ ++e
  KIR61116.1   7 KRALVTGGTSGIGLSIARLLTAGGASVMVTGRSAN------AQIDG----VIAVRSDATSRADIDALAEQVKDTFGTLDAVFLNAGVpGDSTPFEATTE 95 
                 679****************************9966......56776....9************************************98999******* PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 e++++v++ N++g+f + + ++  +  + sG +v ++Sva + ++++++aYsAsKaa+++++r+l +el p+g+rvnav PG +dT++ ++
  KIR61116.1  96 EDFDAVFAANVKGPFFTLQRLVGLLA-EDSG-VVLTTSVANEIGMPNMSAYSASKAALRSMARTLGRELLPRGVRVNAVSPGTIDTGILHR 184
                 ********************999966.5555.78899*************************************************99876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   3.9   1.1e-18   3.8e-15       4     167 ..      10     162 ..       8     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 1.1e-18
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE-------.--TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrd.klleemt 101
                 l+tGG+ g+Gl++ar l + ga ++++++Rsa      +a+i+        v +v+ D ++++++ al e++k++++++  v+  Agv  d +++e +t
  KIR61116.1  10 LVTGGTSGIGLSIARLLTAGGA-SVMVTGRSA------NAQID-------GVIAVRSDATSRADIDALAEQVKDTFGTLDAVFLNAGVPGDsTPFEATT 94 
                 9*************98877665.6899****3......23344.......688999********************************986268***** PP

                 HHHHHHHHTTTTHH.HHHHHHHTTTS--S.EEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkG.awnLhelledesld.ffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqg 167
                 +ed+++v+a+ vkG    L++l+     d  +vl++S+a+ +g++  ++Y+a  a l ++a++  ++ 
  KIR61116.1  95 EEDFDAVFAANVKGpFFTLQRLVGLLAEDsGVVLTTSVANEIGMPNMSAYSASKAALRSMARTLGREL 162
                 **************445788888875555169999***********************9999876655 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.6e-08   5.9e-05     105     203 ..      87     180 ..      64     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.6e-08
     DUF1776 105 tgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLGnldla 203
                 ++p+e  +++ +  ++  ++  p+ tlq+l+ ll++        +v+++s+ +++ +p+ +  +    al++++++L rel p ++ v  +  G++d +
  KIR61116.1  87 STPFEATTEEDFDAVFAANVKGPFFTLQRLVGLLAE-----DSGVVLTTSVANEIGMPNMSAYSASKAALRSMARTLGRELLPRGVRVNAVSPGTIDTG 180
                 7899*******************************7.....3468899**********************************************99975 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   8.4e-06      0.03       1      78 [.       9      87 ..       9     110 .. 0.71
   2 ?    3.1   0.0     0.015        53     136     159 ..     138     161 ..     116     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.4e-06
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HH...HHHHHHHHH..T-SEEEE--S---HH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrs...alerlfkee..qpdavihlAavggva 78
                +lVtG+t  iG  +++ l + g  v++  r  +a+    ++ +  v+ d t r+   al++ +k++    dav++ A+v g +
  KIR61116.1  9 ALVTGGTSGIGLSIARLLTAGGASVMVTGRSANAQ----IDGVIAVRSDATSRAdidALAEQVKDTfgTLDAVFLNAGVPGDS 87
                59*********************999999995554....44555566666665522233333333334689999988876655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.015
                 ---SSHHHHHHHHHHHHHHHHHHH CS
   Epimerase 136 lkpnspYaaaKlageklveayaaq 159
                 ++  s+Y+a+K+a  ++++ + ++
  KIR61116.1 138 MPNMSAYSASKAALRSMARTLGRE 161
                 47889************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1686.04
//
Query:       KIR61117.1  [L=706]
Description: glycosyl hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-81  274.0   2.1    1.4e-81  273.8   0.7    1.8  2  ThuA             Trehalose utilisation
      1e-37  130.1   1.1    2.1e-37  129.0   0.1    2.1  2  DUF1080          Domain of Unknown Function (DUF1080)
      5e-31  107.3  21.9    8.9e-14   52.0   3.4    4.3  4  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    8.7e-29  100.4   1.1    8.7e-29  100.4   1.1    4.1  5  CBM_6            Carbohydrate binding module (family 6)
    4.1e-28   98.2   5.8    6.5e-28   97.5   5.8    1.3  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    0.00089   19.4   3.7     0.0012   19.0   0.1    3.1  4  DUF5010_C        DUF5010 C-terminal domain
  ------ inclusion threshold ------
      0.054   13.8   4.1         20    5.6   0.5    3.3  3  ET               ET module


Domain annotation for each model (and alignments):
>> ThuA  Trehalose utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.8   0.7   5.3e-85   1.4e-81       2     210 .]      37     247 ..      36     247 .. 0.98
   2 ?   -1.9   0.0       1.2   3.2e+03      71      90 ..     494     515 ..     487     520 .. 0.77

  Alignments for each domain:
  == domain 1  score: 273.8 bits;  conditional E-value: 5.3e-85
                 EEEEE-..-.SHHHH-...HHHHHH-HHHT-EEEEETTS.G--HHHHHT-SEEEEE-G..GS-HHHHHH.HHHHHHTT-EEEEEGGGGS.....HHHH. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThuA   2 VLvfsgtagerhdsieaaieaieklgkengfevdatedaavfteenLaqydvvvflstegevldaaqeaalqryveaGgGfvglhsAadaeerskwfsg 100
                 VLvfs+tag+rhdsi ++++ai++lg++ngf+v+ateda+ ft++nLaqy++vvfl+t+g+vldaaq++a+++yv++GgG+vg+h+Aad+e+ ++++++
  KIR61117.1  37 VLVFSKTAGFRHDSIAVGTQAIRELGAANGFTVTATEDASRFTTANLAQYEAVVFLNTTGDVLDAAQQSAFESYVNGGGGYVGVHAAADTEYGWSYYGN 135
                 9************************************************************************************************** PP

                 HH-SEEEEET............TSGGGTT--.SEEEEEEEEE-S---SE...EEEEE.................ETE...TTEEEEEE----TTSGGG- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThuA 101 LiGarfvghppvqeatvkvedrshpateglpeewertdewYnfkpnprg.vhvlatvdestydp..ngadhPiaWcreydgkGrvFytalGhteesyee 196
                 L+G++f++hp++q+a+v++e+r+hpat +lp++ +rtdewYn+++npr+ ++vlat+des+y++  +g dhPi+Wc+++  +Gr+Fyt+lGht+ sy e
  KIR61117.1 136 LVGGYFASHPAIQQANVRIENRAHPATGQLPQTLTRTDEWYNYQTNPRAgARVLATLDESSYSGgsMGGDHPISWCKTV-SSGRSFYTGLGHTQGSYAE 233
                 ***************************************************************778*************.56***************** PP

                 HHHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxx RF
        ThuA 197 pefrkhllgglkWa 210
                 ++fr+hllgg+++a
  KIR61117.1 234 AAFRSHLLGGIRYA 247
                 ************97 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
                 .HHHHHHTT..-EEEEEGGGGS CS
                 xxxxxxxxx..xxxxxxxxxxx RF
        ThuA  71 alqryveaG..gGfvglhsAad 90 
                 +l+++v +G  gG +g+++++ 
  KIR61117.1 494 SLRARVVSGgpGGTIGIRTGSA 515
                 577777777689******9954 PP

>> DUF1080  Domain of Unknown Function (DUF1080)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   0.1   8.3e-41   2.1e-37       1     185 []     260     434 ..     260     434 .. 0.90
   2 ?   -1.5   0.1       0.9   2.3e+03       7      34 ..     643     669 ..     611     694 .. 0.59

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 8.3e-41
                 TEEEST.SSTTTTEEETTSSS..TTEEEETTEEE.CGG.ESSS--EEES.SEBSSEEEEEEEEEETTTEEEEEEEES.CTTTSSGGGTSCEEEEE-TTT CS
     DUF1080   1 gwksLfnGkdldgWkgkegkatseatkvedGvlvaaessgkgggflitk.kefgdfeLklefkiseggnSGillrsq.keekgkdavagyevqildsek 97 
                 g+ +L nG +++gW++++ +++s+     d +l+    s +g g  ++  k+f+++ Lkl++++s   nSG+++    + + +  + +gye+qi+ ++ 
  KIR61117.1 260 GYSNLYNG-STTGWSQAGPGSFSN----SDATLT----SVGGMGLYWYSaKQFTNYSLKLDWRMSGDDNSGVFIGFPpSTDPWSAVDNGYEIQIDATDA 349
                 577899*9.59******9999875....69***9....5556666555548************99999*********9999999************887 PP

                 HSTCCCSTTSBTTTBTTB--SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETTSHHHHHHSSBEEEEECCC..STEEEEEEEEE CS
     DUF1080  98 ekganrstGslydeeskqvkpkakaakppgeWntyeiivkgdrvtvwlNGvlvldftdldaetekgkkgpIaLqdhg..aeveFRnikik 185
                     +r+tG++y  +s + ++++ a +ppgeWntye++v+g+r++v+lNG +++dft++d++ +    g+++Lq+hg  ++v+FRn++ik
  KIR61117.1 350 A---DRTTGAVYTFQSADLAARDAALNPPGEWNTYELLVEGERLQVFLNGRKINDFTNTDPARS--LAGHVGLQNHGtgDDVSFRNVRIK 434
                 7...********88888888*****************************************754..99*********777*********8 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.9
                 .SSTTTTEEETTSSS..TTE.EEETTEEE CS
     DUF1080   7 nGkdldgWkgkegkatseat.kvedGvlv 34 
                 +G++ + W+ ++++a ++ + +  dG+l 
  KIR61117.1 643 DGTKIQLWTCNGSGA-QN-WsAQADGTLR 669
                 344444444442222.11.2244555555 PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.8   7.3e+03      48      79 ..      74     105 ..      61     113 .. 0.54
   2 !   49.7   1.2   1.8e-16   4.5e-13      22      89 .]     589     650 ..     585     650 .. 0.95
   3 !   52.0   3.4   3.5e-17   8.9e-14      21      89 .]     629     693 ..     624     693 .. 0.94
   4 !   33.5   2.6   2.1e-11   5.3e-08       2      54 ..     657     705 ..     656     706 .] 0.91

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.8
                      GGCEEEEECCESS.EEEEEETTTTEEEEECGCS CS
  RicinB_lectin_2  48 anqqWrledtgdg.tyrivnkasgkvLdvaggs 79 
                      ++ +++  ++++   + +  + +g vLd a++s
       KIR61117.1  74 DASRFTTANLAQYeAVVFL-NTTGDVLDAAQQS 105
                      5555555444422222333.3445577777554 PP

  == domain 2  score: 49.7 bits;  conditional E-value: 1.8e-16
                      SSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  22 sgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                       gk+L v +++t++g+++q +tc+g+a+q+W++++++      + ka gk+Ldv+gg++a+Gt++q+w
       KIR61117.1 589 GGKCLYVRNAATTDGTQIQIYTCNGTAAQTWTVTPNS------TVKALGKCLDVSGGASADGTKIQLW 650
                      69*******************************9999......8999********9999********9 PP

  == domain 3  score: 52.0 bits;  conditional E-value: 3.5e-17
                      SSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  21 asgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      a gk+Ldv+gg+ a+g+++q wtc+g+ +q W  + +g    +++n +sgk+Ldv+++++++G++v++w
       KIR61117.1 629 ALGKCLDVSGGASADGTKIQLWTCNGSGAQNWSAQADG----TLRNPQSGKCLDVSDNNATDGQPVHLW 693
                      559******************************98888....9*************8888********9 PP

  == domain 4  score: 33.5 bits;  conditional E-value: 2.1e-11
                      CGEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEE CS
  RicinB_lectin_2   2 nQqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrl 54 
                      +Q W+   ++dg  t++n +sgk+Ldv+++++++g+ v+ wtc +aanq+W+l
       KIR61117.1 657 AQNWSA--QADG--TLRNPQSGKCLDVSDNNATDGQPVHLWTCLSAANQKWTL 705
                      699999..2344..9************************************97 PP

>> CBM_6  Carbohydrate binding module (family 6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.4   3.5e+03      57      88 ..     102     133 ..      68     142 .. 0.68
   2 ?   -0.3   0.2      0.49   1.3e+03      61      91 ..     149     181 ..     113     188 .. 0.71
   3 ?   -1.1   0.0      0.88   2.3e+03      20      43 ..     412     435 ..     399     438 .. 0.76
   4 !  100.4   1.1   3.4e-32   8.7e-29       1     124 [.     449     571 ..     449     572 .. 0.96
   5 ?   -1.2   0.3      0.93   2.4e+03      29      88 ..     601     660 ..     591     676 .. 0.55

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
                 SSEEEEEEEESSTTSSEEEEEEE--.-SSTTEE CS
       CBM_6  57 aaggsielrldsatgtlvgtvsvps.tggwqty 88 
                 a+ +++e ++++  g  vg+ + +  + gw+ y
  KIR61117.1 102 AQQSAFESYVNG-GGGYVGVHAAADtEYGWSYY 133
                 333567777777.77777777775546677777 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.49
                 EEEEEESSTTSSEEEEEEE..---SSTTEEEEE CS
       CBM_6  61 sielrldsatgtlvgtvsv..pstggwqtyvtv 91 
                 +  +r+  +  +  g+++   + t  w++y+t 
  KIR61117.1 149 QANVRIENRAHPATGQLPQtlTRTDEWYNYQTN 181
                 445555555555666655432458889998875 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.88
                 TTSEEEE---TT-EEEEEEEEESS CS
       CBM_6  20 gggkavgyinnGdwlaYkdvdfgs 43 
                 +g +++ +  +Gd +++++v +++
  KIR61117.1 412 AGHVGLQNHGTGDDVSFRNVRIKE 435
                 47788888999********99986 PP

  == domain 4  score: 100.4 bits;  conditional E-value: 3.4e-32
                 ETTCESEEES-EEEE--STTTSEEEE---TT-EEEEEEEEESSTEEEEEEEEEEESSSEEEEEEEESSTTSSEEEEEEE---SSTTEEEEEEEEEEE-S CS
       CBM_6   1 eAesydkqsgvslekataagggkavgyinnGdwlaYkdvdfgsggaysvearvasgaaggsielrldsatgtlvgtvsvpstggwqtyvtvsanvtlpt 99 
                 +Ae +++ +gvs  +++ a+gg+++gy++ Gdw aY ++d+    +  ++arv sg+ gg+i +r++satg+l+g+v+vp+tggw+ty +vs+++  + 
  KIR61117.1 449 QAEAFSSANGVSAFTKAGANGGQTLGYVDPGDWAAYPGLDLTGVTS--LRARVVSGGPGGTIGIRTGSATGPLLGQVAVPNTGGWTTYADVSTTLAGVP 545
                 8**************99999*******************9887777..************************************************998 PP

                 .EEEEEEEEEECSST---EEEEEEEE CS
       CBM_6 100 .Gvhdlylvftggaeylfnldwfkft 124
                  G++++yl+ftg+++ lf++d+f++ 
  KIR61117.1 546 aGTQTVYLTFTGSGTGLFDVDDFTLV 571
                 8***********999********986 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 0.93
                 -TT-EEEEEEEEESSTEEEEEEEEEEESSSEEEEEEEESSTTSSEEEEEEE---SSTTEE CS
       CBM_6  29 nnGdwlaYkdvdfgsggaysvearvasgaaggsielrldsatgtlvgtvsvpstggwqty 88 
                 ++G  ++   ++  ++++ +v+ + + +a g  ++++ +        ++++ +++g q++
  KIR61117.1 601 TDGTQIQIYTCNGTAAQTWTVTPNSTVKALGKCLDVSGGASADGTKIQLWTCNGSGAQNW 660
                 445555544455555555555555555555566666665544444445555566666666 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   5.8   2.5e-31   6.5e-28       8     127 .]     588     703 ..     581     703 .. 0.96

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 2.5e-31
                     TTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEETTSEEEETT.TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTTEEEETTTSE CS
  Ricin_B_lectin   8 vasgkCLdvegeska.gapvglydChgskgkQlwtltkdgeirskaqselCldvs..staegakvvlakChkgkgnqrWefdkdgtqirhkksgk 99 
                        gkCL v++++++ g+++++y+C+g+++ Q wt+t + +++     ++Cldvs  ++a+g+k++l++C+ g+g+q W+ + dgt +r+++sgk
      KIR61117.1 588 L-GGKCLYVRNAATTdGTQIQIYTCNGTAA-QTWTVTPNSTVKA---LGKCLDVSggASADGTKIQLWTCN-GSGAQNWSAQADGT-LRNPQSGK 675
                     4.79************************88.************9...9**********************9.**************.******** PP

                     EEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin 100 CLdvkgasksne.klilkkcdsgsdsQkW 127
                     CLdv++++ +++ +++l++c  ++++QkW
      KIR61117.1 676 CLDVSDNNATDGqPVHLWTC-LSAANQKW 703
                     ********9999******99.******** PP

>> DUF5010_C  DUF5010 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1         3   7.6e+03      68      87 ..      68      87 ..      63      94 .. 0.81
   2 ?   -3.5   0.0       4.5   1.2e+04      66      80 ..     166     180 ..     148     187 .. 0.57
   3 !   19.0   0.1   4.5e-07    0.0012      13     102 ..     467     557 ..     455     566 .. 0.88
   4 ?   -1.8   0.0       1.3   3.4e+03      42      69 ..     593     621 ..     588     637 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3
   DUF5010_C 68 elpaTgglqewetvdagtlk 87
                ++ aT +  +++t+++++++
  KIR61117.1 68 TVTATEDASRFTTANLAQYE 87
                67889999999999999876 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.5
   DUF5010_C  66 svelpaTgglqewet 80 
                  ++l  T ++ +++t
  KIR61117.1 166 PQTLTRTDEWYNYQT 180
                 344555555555554 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 4.5e-07
   DUF5010_C  13 vnggwnvtsteaGewlewkeipfkaGavtlkvryattkeaakvrfvidgtagp...svelpaTgglqewetvdagtlkieakgyhtvkleive 102
                  ngg + + +++G+w  +  +++  G + l++r+ +   +  + +  +  +gp   +v +p+Tgg+ ++ +v+ +   ++a++ +tv l+++ 
  KIR61117.1 467 ANGGQTLGYVDPGDWAAYPGLDLT-GVTSLRARVVSGGPGGTIGIRTGSATGPllgQVAVPNTGGWTTYADVSTTLAGVPAGT-QTVYLTFTG 557
                 589999999**************9.***********9999999999988777644489***********************99.999999974 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.3
   DUF5010_C  42 lkvryattkeaakvrfvi.dgtagpsvel 69 
                 l vr a+t+++++++++  +gta ++ ++
  KIR61117.1 593 LYVRNAATTDGTQIQIYTcNGTAAQTWTV 621
                 67888888888888877556676666554 PP

>> ET  ET module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.5    0.0079        20      22      46 ..     590     614 ..     581     618 .. 0.90
   2 ?    4.4   0.1     0.018        46       8      45 ..     617     654 ..     612     659 .. 0.83
   3 ?    3.8   0.0     0.028        72      21      45 ..     673     697 ..     654     702 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0079
          ET  22 GeCasvsltttvngqnvtlytCdpt 46 
                 G+C  v+  +t +g+++++ytC  t
  KIR61117.1 590 GKCLYVRNAATTDGTQIQIYTCNGT 614
                 99*****99*************865 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.018
          ET   8 nekaistgaevaCdGeCasvsltttvngqnvtlytCdp 45 
                 ++ +++ +++v+  G+C  vs  +  +g++++l+tC  
  KIR61117.1 617 QTWTVTPNSTVKALGKCLDVSGGASADGTKIQLWTCNG 654
                 55567888899999*******999************75 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.028
          ET  21 dGeCasvsltttvngqnvtlytCdp 45 
                 +G+C  vs +   +gq v+l+tC  
  KIR61117.1 673 SGKCLDVSDNNATDGQPVHLWTCLS 697
                 5*******99*************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 5011.07
//
Query:       KIR61118.1  [L=946]
Description: glycosyl hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-37  128.4   0.0    1.4e-34  119.9   0.1    2.5  2  GSDH             Glucose / Sorbosone dehydrogenase
    1.1e-31  109.4  22.0    5.7e-14   52.6   1.4    4.4  5  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    5.3e-31  107.5   1.3    5.3e-31  107.5   1.3    3.9  3  CBM_6            Carbohydrate binding module (family 6)
    1.4e-29  102.9   6.3    2.6e-29  102.0   6.3    1.5  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    1.2e-10   41.1   4.7    1.2e-10   41.1   4.7    3.3  3  PKD              PKD domain
    2.7e-05   24.3   0.6    0.00016   21.7   0.2    2.5  2  DUF5010_C        DUF5010 C-terminal domain
    8.2e-05   23.3   0.2    8.2e-05   23.3   0.2    4.5  4  Big_7            Bacterial Ig domain
  ------ inclusion threshold ------
      0.025   14.9   3.2         11    6.5   0.2    3.6  3  ET               ET module


Domain annotation for each model (and alignments):
>> GSDH  Glucose / Sorbosone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.9   0.1   6.1e-38   1.4e-34       3     230 ..      60     335 ..      58     357 .. 0.84
   2 !    5.7   0.0    0.0036         8     264     323 ..     414     474 ..     382     479 .. 0.86

  Alignments for each domain:
  == domain 1  score: 119.9 bits;  conditional E-value: 6.1e-38
                 -EEEEEE-TTS-EEEEETTTEEEEEE.TTEE.EEEEE-.----STT-SEEEEEE-TTTTTS-EEEEEEEE-................TTSSEEEEEEEE CS
        GSDH   3 hPwslaflpdgrlLvtersGrlrlvkadgklkepiagvpevvakgqgGlldvalhpdfaenrlvYltyaea.............eeekggagtavarar 88 
                 +P+ +a+lpd+++L t r+G+lr ++a+g++  ++ g+  v+++ + Gl++v ++p+f +nr vYl++a               + ++ +  ++++r++
  KIR61118.1  60 EPMTIAVLPDRSVLHTARNGTLRRTDAAGTT--TVVGTIPVYTHDEEGLQGVGVDPNFTTNRHVYLYHAPPlstpagdapatgtDFSAWQGVNRLSRFT 156
                 79************************99998..5666667*****************************7799****99987543333355679***** PP

                 E-SS..-EEEEEEEEEEE---TT.-------EEE-TTS-EEEE---TT-......GG................GGG-TT-SSSEEEEE-..TTSS..B- CS
        GSDH  89 lsedeaaledlevifrqepkves.gahfGsrlafgpdgtLfvtvGdrsk......re................eaqdlsselGkilrln..kdGs..vp 160
                 l++d +  ++++v + + p+ ++   h+G+ + f++ g+L++++Gd s+       +                +a + ++  Gkilr++  +dGs  +p
  KIR61118.1 157 LNADWTLNTSSQVTVLDVPADRGiCCHVGGDIDFDAAGNLYLSTGDDSNpfdsagYApidertnrnpaydaqrSAANSNDLRGKILRIKvnADGSysIP 255
                 *9997766777777777777555489***********************87665500555666777888777788899999*****997669995449* PP

                 TT-TTT.T-TTS-TTEEEE--SCE---EE-TTT--EEEEEE--SSS..........EEEEEE-TT-B--TTT-S......S CS
        GSDH 161 adnpfv.gkagakpeiwsyGhRnpqGlaldpdtgeLwesEhGprgg..........DelnlieaGknYGWplvsygeeYsg 230
                 a+n f+ g+a  +pei+++G Rnp  + +d++tg ++  + Gp  g           e+n+++  +nYGWp  + g++  +
  KIR61118.1 256 AGNMFApGTARTRPEIYAMGFRNPFRMSVDKATGVVYVGDYGPDAGttstrgpsgqVEFNRVTGPGNYGWPYCT-GANTAT 335
                 *****96678999***************************99998888888888889**************999.555444 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0036
                 .......TTEEEEEETTTTEEEEEEEEEEEEEEEEEEEEESS-.-EEEEEE-TTS-EEEEE CS
        GSDH 264 dafp.ewkgdllvggLksqsllrleldegekvveeerlleelgeriRdVeqgpdGalyvlt 323
                 ++fp +++g+++++ L    +  ++++++++  + +  +   g+++ d + gpdGalyvl 
  KIR61118.1 414 TKFPqSFDGQFFAAELGRGWIKPIHVNADGSRGAIDASFPWNGKQVMDSAFGPDGALYVLD 474
                 5676259*******************999888888888888889***************85 PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       4.5     1e+04      48      76 ..     151     175 ..     133     178 .. 0.54
   2 ?   -2.8   0.1       4.8   1.1e+04      24      78 ..     749     800 ..     739     804 .. 0.59
   3 !   52.6   1.4   2.5e-17   5.7e-14      22      89 .]     829     890 ..     810     890 .. 0.92
   4 !   52.3   2.9   3.2e-17   7.2e-14      21      89 .]     869     933 ..     865     933 .. 0.94
   5 !   33.4   2.7   2.5e-11   5.5e-08       2      54 ..     897     945 ..     896     946 .] 0.91

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.5
                      GGCEEEEECCESSEEEEEETTTTEEEEEC CS
  RicinB_lectin_2  48 anqqWrledtgdgtyrivnkasgkvLdva 76 
                         +++l    +  +++ +    +vLdv+
       KIR61118.1 151 RLSRFTL----NADWTLNTSSQVTVLDVP 175
                      4445555....235666666666777776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.8
                      EEEECGCCTBCTTEEEEEE-TT.T-GGCEEEEECCESSEEEEEETTTT.EEEEECGC CS
  RicinB_lectin_2  24 kvLdvaggstanganvqqwtcs.gaanqqWrledtgdgtyrivnkasg.kvLdvagg 78 
                        L+v  gs++ g+ + q t+  ++   +++   t +gt++  ++ +g ++L+ a g
       KIR61118.1 749 GTLQVRMGSPT-GTVLGQATVPvTGGWETFT---TVTGTVSGAPASTGtLYLTFA-G 800
                      55666666666.6666666644344444444...344677777777777777777.3 PP

  == domain 3  score: 52.6 bits;  conditional E-value: 2.5e-17
                      SSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  22 sgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                       gk+Ldv +++t++g+++q +tc+g+a+q+W++++++      + ka gk+Ldv+gg++a+Gt++q+w
       KIR61118.1 829 GGKCLDVRNAATTDGTQIQIYTCNGTAAQTWTVTPNS------TVKALGKCLDVSGGASADGTKIQLW 890
                      69*******************************9999......8999********9999********9 PP

  == domain 4  score: 52.3 bits;  conditional E-value: 3.2e-17
                      SSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  21 asgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      a gk+Ldv+gg+ a+g+++q wtc+g+ +q W  +++g    +++n +sgk+Ldv+++++++G++v++w
       KIR61118.1 869 ALGKCLDVSGGASADGTKIQLWTCNGSGAQNWSAQTDG----TLRNPQSGKCLDVSDNNATDGQPVHLW 933
                      559******************************98888....9*************8888********9 PP

  == domain 5  score: 33.4 bits;  conditional E-value: 2.5e-11
                      CGEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEE CS
  RicinB_lectin_2   2 nQqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrl 54 
                      +Q W+     +   t++n +sgk+Ldv+++++++g+ v+ wtc +aanq+W+l
       KIR61118.1 897 AQNWSA----QTDGTLRNPQSGKCLDVSDNNATDGQPVHLWTCLSAANQKWTL 945
                      699999....33459************************************97 PP

>> CBM_6  Carbohydrate binding module (family 6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.5       0.1   2.3e+02      41      99 ..     554     616 ..     529     627 .. 0.72
   2 !  107.5   1.3   2.4e-34   5.3e-31       1     124 [.     692     814 ..     692     815 .. 0.98
   3 ?   -1.1   0.4         1   2.3e+03      28      97 ..     840     910 ..     831     916 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.1
                 ESSTEEEEEEEEEEESSSE.EEEEEEESSTTSSEEEEEEE---SSTTEE...EEEEEEEEE-S CS
       CBM_6  41 fgsggaysvearvasgaag.gsielrldsatgtlvgtvsvpstggwqty...vtvsanvtlpt 99 
                 f ++g+y+v+  v    ++ g+  ++++  ++++  t++ p+ g+  +y   v  s +vt+p 
  KIR61118.1 554 FTANGTYNVTLTVRDPQGAtGTASVQIGVGNTAPTVTITGPANGSLFSYgdaVPFSITVTDPE 616
                 788899999966655444345555555554477777777788999988865555566666655 PP

  == domain 2  score: 107.5 bits;  conditional E-value: 2.4e-34
                 ETTCESEEES-EEEE--STTTSEEEE---TT-EEEEEEEEESSTEEEEEEEEEEESSSEEEEEEEESSTTSSEEEEEEE---SSTTEEEEEEEEEEE-S CS
       CBM_6   1 eAesydkqsgvslekataagggkavgyinnGdwlaYkdvdfgsggaysvearvasgaaggsielrldsatgtlvgtvsvpstggwqtyvtvsanvtlpt 99 
                 +Ae+ +++sgv+l++++ a+gg++vg+i+nGdw+a++ + +++  +  ++arv+s++ gg++++r++s+tgt++g+++vp+tggw+t++tv+ +v+ + 
  KIR61118.1 692 QAEHLKTSSGVTLYDKAPAEGGRTVGSIDNGDWIAFEPYRLDKVTS--FSARVSSNGVGGTLQVRMGSPTGTVLGQATVPVTGGWETFTTVTGTVSGAP 788
                 8*****************99********************999999..************************************************998 PP

                 .EEEEEEEEEECSST---EEEEEEEE CS
       CBM_6 100 .Gvhdlylvftggaeylfnldwfkft 124
                   + +lyl+f gg+++lf+ld f+f 
  KIR61118.1 789 aSTGTLYLTFAGGTGALFDLDTFTFV 814
                 8***********999*********96 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1
                 --TT-EEEEEEEEESSTEEEEEEEEEEESSSEEEEEEEESSTTSSEEEEEEE---SSTTEE.EEEEEEEEE CS
       CBM_6  28 innGdwlaYkdvdfgsggaysvearvasgaaggsielrldsatgtlvgtvsvpstggwqty.vtvsanvtl 97 
                 +++G  ++   ++  ++++ +v+ + + +a g  ++++ +        ++++ +++g q++  ++  ++ +
  KIR61118.1 840 TTDGTQIQIYTCNGTAAQTWTVTPNSTVKALGKCLDVSGGASADGTKIQLWTCNGSGAQNWsAQTDGTLRN 910
                 45555566555666666666666666666666777777766555555566666777777775445555555 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   6.3   1.2e-32   2.6e-29       3     127 .]     823     943 ..     821     943 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 1.2e-32
                     EEEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEETTSEEEETT.TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTTEEEE CS
  Ricin_B_lectin   3 geirnvasgkCLdvegeska.gapvglydChgskgkQlwtltkdgeirskaqselCldvs..staegakvvlakChkgkgnqrWefdkdgtqirh 94 
                     g i++   gkCLdv++++++ g+++++y+C+g+++ Q wt+t + +++     ++Cldvs  ++a+g+k++l++C+ g+g+q W+ ++dgt +r+
      KIR61118.1 823 GPIVGL-GGKCLDVRNAATTdGTQIQIYTCNGTAA-QTWTVTPNSTVKA---LGKCLDVSggASADGTKIQLWTCN-GSGAQNWSAQTDGT-LRN 910
                     667777.8*************************88.************9...9**********************9.**************.*** PP

                     TTTSEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  95 kksgkCLdvkgasksne.klilkkcdsgsdsQkW 127
                     ++sgkCLdv++++ +++ +++l++c  ++++QkW
      KIR61118.1 911 PQSGKCLDVSDNNATDGqPVHLWTC-LSAANQKW 943
                     *************9999******99.******** PP

>> PKD  PKD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2         1   2.3e+03      22      38 ..     333     349 ..     325     363 .. 0.74
   2 !   41.1   4.7   5.2e-14   1.2e-10       2      68 ..     506     572 ..     504     575 .. 0.91
   3 ?   -4.0   0.5       6.2   1.4e+04      15      26 ..     776     789 ..     765     818 .. 0.54

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1
                 -SS-SEEEEE--SS--E CS
         PKD  22 dganvtysWdfgdgsvv 38 
                 +++++  +Wdf  g+++
  KIR61118.1 333 TATETYAEWDFAAGTAG 349
                 56677777***998655 PP

  == domain 2  score: 41.1 bits;  conditional E-value: 5.2e-14
                 E---S--BSSEEEEEEEES....-SS-SEEEEE--SS--EEEEETTEEEEEE-SSEEEEEEEEEE-SS-E CS
         PKD   2 sasptvlvpgatvaftaav...pdganvtysWdfgdgsvvqvlseptvthtYlspGeYeVtvtasnavgs 68 
                 +a +t+ ++  tv+f+++    p g  +tysW fgd   +++++  +++ t+++ G+Y+Vt+t+ ++ g+
  KIR61118.1 506 AADRTSGAAPLTVNFSSTGssdPEGGALTYSWAFGD---GTTSTAANPSKTFTANGTYNVTLTVRDPQGA 572
                 45588899999*****99998999************...***************************9886 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 6.2
                 EEEEES...-SS-S CS
         PKD  15 aftaav..pdganv 26 
                 +ft +    +ga++
  KIR61118.1 776 TFTTVTgtVSGAPA 789
                 44433333233333 PP

>> DUF5010_C  DUF5010 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.2   7.4e-08   0.00016      14     103 ..     711     801 ..     702     810 .. 0.83
   2 ?   -1.8   0.0       1.4   3.2e+03      41      69 ..     832     861 ..     828     876 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 7.4e-08
   DUF5010_C  14 nggwnvtsteaGewlewkeipfkaGavtlkvryattkeaakvrfvi...dgtagpsvelpaTgglqewetvdagtlkieakgyhtvkleiveG 103
                 +gg +v+s+++G+w+ ++   +   +  + +r++++  +  +++ +    gt   + ++p Tgg+++++tv  ++   +a +  t+ l++  G
  KIR61118.1 711 EGGRTVGSIDNGDWIAFEPYRLDKVT-SFSARVSSNGVGGTLQVRMgspTGTVLGQATVPVTGGWETFTTVTGTVSGAPAST-GTLYLTFAGG 801
                 7899**************98888544.8*******9888888888855667888899**************98887777777.7777777766 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.4
   DUF5010_C  41 tlkvryattkeaakvrfvi.dgtagpsvel 69 
                  l vr a+t+++++++++  +gta ++ ++
  KIR61118.1 832 CLDVRNAATTDGTQIQIYTcNGTAAQTWTV 861
                 577899999999999887656777666554 PP

>> Big_7  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       6.2   1.4e+04      43      64 ..     325     349 ..     311     351 .. 0.57
   2 ?    2.8   1.7      0.09     2e+02       6      40 ..     546     584 ..     542     586 .. 0.76
   3 !   23.3   0.2   3.6e-08   8.2e-05       1      58 [.     587     652 ..     587     682 .. 0.77
   4 ?   -2.2   0.2       3.4   7.5e+03       9      26 ..     862     881 ..     840     890 .. 0.56

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.2
                 ....EEEE-SSSEEEEEE--...SE CS
       Big_7  43 g...lgtdtsapysltwtttaltag 64 
                 +   +g++t++   ++w+ +a+tag
  KIR61118.1 325 WpycTGANTATETYAEWDFAAGTAG 349
                 2555555666666667777666665 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.09
                 EE--TT--EB.TSEEEEEEEEE-S...S-EEEEEEEETT CS
       Big_7   6 tsPangatvs.ggtvtisasAsdd...ggvskVefyvdg 40 
                 t+  +  t++ +gt +++ ++ d+   +g ++V++ v++
  KIR61118.1 546 TAANPSKTFTaNGTYNVTLTVRDPqgaTGTASVQIGVGN 584
                 555567788888999999999999777777888877766 PP

  == domain 3  score: 23.3 bits;  conditional E-value: 3.6e-08
                 XEEEEEE--TT--EB.TSEEEEEEEEE-S..S-E..EEEEE.EETTEE.....EEEE-SSSEEEEEE- CS
       Big_7   1 PtvtitsPangatvs.ggtvtisasAsdd..ggv..skVef.yvdgtl.g...lgtdtsapysltwtt 58 
                 Ptvtit Pang+ +s g+ v +s +++d+  g++  +kV   yv g   +   +++  ++++s ++t+
  KIR61118.1 587 PTVTITGPANGSLFSyGDAVPFSITVTDPedGTIdcAKVRMtYVLGHDqHghqITS--KNGCSGSITI 652
                 9*****************************99997766644455554433443333..3455555555 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 3.4
                 -TT--EB..TSEEEEEEEEE CS
       Big_7   9 angatvs..ggtvtisasAs 26 
                 ++++tv+  g+ +++s+ As
  KIR61118.1 862 TPNSTVKalGKCLDVSGGAS 881
                 23444444344445555555 PP

>> ET  ET module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2    0.0047        11      22      46 ..     830     854 ..     813     864 .. 0.88
   2 ?    4.0   0.1     0.028        62       8      45 ..     857     894 ..     852     901 .. 0.84
   3 ?    3.5   0.0     0.039        88      21      45 ..     913     937 ..     895     942 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0047
          ET  22 GeCasvsltttvngqnvtlytCdpt 46 
                 G+C  v+  +t +g+++++ytC  t
  KIR61118.1 830 GKCLDVRNAATTDGTQIQIYTCNGT 854
                 9******99*************865 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.028
          ET   8 nekaistgaevaCdGeCasvsltttvngqnvtlytCdp 45 
                 ++ +++ +++v+  G+C  vs  +  +g++++l+tC  
  KIR61118.1 857 QTWTVTPNSTVKALGKCLDVSGGASADGTKIQLWTCNG 894
                 55567888899999*******999************85 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.039
          ET  21 dGeCasvsltttvngqnvtlytCdp 45 
                 +G+C  vs +   +gq v+l+tC  
  KIR61118.1 913 SGKCLDVSDNNATDGQPVHLWTCLS 937
                 5*******99*************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (946 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 6184.86
//
Query:       KIR61119.1  [L=326]
Description: alcohol dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-19   70.9   0.2    3.9e-19   70.0   0.2    1.5  1  ADH_zinc_N_2    Zinc-binding dehydrogenase
    6.3e-16   58.5   0.4      1e-15   57.8   0.4    1.4  1  ADH_zinc_N      Zinc-binding dehydrogenase
    2.4e-08   33.8   0.1    2.4e-07   30.6   0.0    2.3  2  ADH_N           Alcohol dehydrogenase GroES-like domain
     0.0082   16.1   4.7      0.011   15.7   3.9    1.5  1  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.27   11.1   0.0    1.5  1  ADH_N_2         N-terminal domain of oxidoreductase


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.2   1.1e-22   3.9e-19       2     133 .]     191     324 ..     190     324 .. 0.88

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 1.1e-22
                   T-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-......-HH CS
  ADH_zinc_N_2   2 GAdevidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkas.....aqad 88 
                   GA  vi  ++ed++    ++tgg g D++ld+v g+ l+e sl + + gG+l ++g        +++pa++  ++s+++  ++s +a+       ++
    KIR61119.1 191 GAAVVIATDREDVAeatrRHTGGVGADIILDAVMGPGLAELSL-AAKLGGTLATVGwL------DPRPASFPANPSLTVYRYMS-SADmvdpvTARR 279
                   999999888888888999********************88887.44566*******66......88999999999999999995.666788876666 PP

                   HHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  89 ileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   + + l+a +  G l+p vdrvf+l ++ eAhryle+g a GKiV+
    KIR61119.1 280 VAAFLTAGVRTGVLQPAVDRVFSLGDIIEAHRYLEKGTAAGKIVV 324
                   6888888888899*******************************8 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.4   2.9e-19     1e-15       1     103 [.     158     260 ..     158     285 .. 0.91

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 2.9e-19
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgeeefd 98 
                 gvG aa+q+A+ +Ga +iav + + k+e +   Ga +vi ++++d+ e+ +++tgg g+d+++++v  g  l +   ++k gG+l++vG     + +f+
  KIR61119.1 158 GVGRAAIQIANQIGAVPIAVTRHSAKVESLLAAGAAVVIATDREDVAEATRRHTGGVGADIILDAVM-GPGLAELSLAAKLGGTLATVGWlDPRPASFP 255
                 8****************************************666***********************.*********************9877777788 PP

                 HHHHH CS
  ADH_zinc_N  99 lrnll 103
                 +++ l
  KIR61119.1 256 ANPSL 260
                 88755 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   6.8e-11   2.4e-07       2      62 ..      29      90 ..      28      97 .. 0.92
   2 ?    0.8   0.0      0.13   4.5e+02      88     107 ..      94     113 ..      89     114 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 6.8e-11
                TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE.---EEEEEEEEESTT-CS--TT-EEEE- CS
       ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklpli.lGHEivGeveevgpevkklkvGdrVvve 62
                gev+++++a +++  D ++  g++  +v+lp + lG E +G+++++g++v++l+vGd V++ 
  KIR61119.1 29 GEVRVRIEAFAVNPLDQMVRGGQSPRPVQLPHArLGVEGTGVIDALGSGVTGLAVGDPVILG 90
                79******************9999999****6549************************975 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.13
                 TTSS-SSSBSEEEECGGGEE CS
       ADH_N  88 gvsldGgfaeyvvvpekklv 107
                 +++++G++aey++++++ +v
  KIR61119.1  94 DFETRGSYAEYTTLSADRVV 113
                 56689*******99988776 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   3.9   2.9e-06     0.011       2      70 ..     155     225 ..     154     245 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.9e-06
                     TTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHT......T-SEEEES--- CS
  NAD_binding_10   2 AtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealk......gadaVvsalgg 70 
                     A+G+vGr++++ + +  g    a++R+++k+++l a+ ++ v+  d +d   +aea +      gad+++ a+ g
      KIR61119.1 155 ASGGVGRAAIQIANQI-GAVPIAVTRHSAKVESLLAAGAAVVIATDRED---VAEATRrhtggvGADIILDAVMG 225
                     99********998888.58999***********9975555555555555...55555433355566777766655 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.6e-05      0.27      15      88 ..      13      87 ..       6      92 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.6e-05
     ADH_N_2 15 esdfeleeeelpelkdGevlvralylSvDPy...mRgrmndaksyvepvelgdvmrggavgeVveSknpdfkvGdlV 88
                ++ +++++e++ e+++Gev+vr++ ++v P     Rg  + +   ++  +lg  ++g++v + + S    ++vGd V
  KIR61119.1 13 PDVLRVVDEPVVEPAAGEVRVRIEAFAVNPLdqmVRGGQSPRPVQLPHARLG--VEGTGVIDALGSGVTGLAVGDPV 87
                6778999********************9996111344444444444444444..56666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2427.43
//
Query:       KIR61120.1  [L=119]
Description: HxlR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-26   92.2   0.0    1.5e-26   92.0   0.0    1.1  1  HxlR       HxlR-like helix-turn-helix
    5.9e-07   29.3   0.2      1e-06   28.5   0.2    1.4  1  MarR_2     MarR family
    0.00088   19.3   0.2     0.0035   17.4   0.2    1.9  1  HTH_20     Helix-turn-helix domain
    0.00089   19.2   0.0     0.0013   18.6   0.0    1.3  1  PadR       Transcriptional regulator PadR-like family
  ------ inclusion threshold ------
      0.039   13.8   0.0      0.075   12.9   0.0    1.5  1  HTH_5      Bacterial regulatory protein, arsR family
      0.045   13.4   0.0      0.086   12.5   0.0    1.4  1  GntR       Bacterial regulatory proteins, gntR family
      0.066   13.2   0.0       0.12   12.4   0.0    1.4  1  HTH_Crp_2  Crp-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0     6e-30   1.5e-26       1      88 [.      21     108 ..      21     111 .. 0.97

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 6e-30
                 HHHSTTHHHHHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHHHHHHHHHH CS
        HxlR   1 liggkWkllilvellkgkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelkkwgeeyle 88 
                 +i +kW +++l++l + ++R +el++ +++is+k+L+q+Lr+L++ gl+er++y e Pp+veYslt  G++l + ++ l++w++e+ e
  KIR61120.1  21 IIAEKWAVIVLFALSRQPRRPGELADLIGGISHKVLTQTLRRLQAYGLVERHAYAEAPPRVEYSLTSLGQTLVEPIKVLTDWARENGE 108
                 699********************************************************************************99877 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.2   4.1e-10     1e-06      10      54 ..      30      72 ..      26      77 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 4.1e-10
                HHHHHHCTTTSEEEHHHHHH.HHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2 10 vLaaLgrrpgrdltvgelar.rlglsksavsrilkrLvaaGLverr 54
                vL+aL r p+   ++gela+   g+s+  ++++l+rL+a GLver 
  KIR61120.1 30 VLFALSRQPR---RPGELADlIGGISHKVLTQTLRRLQAYGLVERH 72
                9********6...*******999*********************96 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   1.4e-06    0.0035      18      56 ..      33      71 ..       6      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.4e-06
                HHSTCTTB-HHHHHHHH.TS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 18 aLaraegltaselaerl.dlskntlsyHLrvLeeagLvev 56
                aL +++++ ++ela+++ ++s + l + Lr L+  gLve+
  KIR61120.1 33 AL-SRQPRRPGELADLIgGISHKVLTQTLRRLQAYGLVER 71
                55.99************77*******************97 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   5.1e-07    0.0013      19      71 ..      44      91 ..      31      94 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5.1e-07
                HHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCH CS
        PadR 19 leelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrr 71
                l++l++g   +s+  l ++L+rL++ glve++     e ppr  Y lT  G++
  KIR61120.1 44 LADLIGG---ISHKVLTQTLRRLQAYGLVERHAYA--EAPPRVEYSLTSLGQT 91
                5666666...677788899*************886..69************97 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.9e-05     0.075       6      46 ..      29      70 ..      27      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.9e-05
                HHHHHHTTSSEEHHHHHHHH.TS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  6 kILklLaegelcvcelaeel.glsqstvShHLkkLreaGLVe 46
                 +L++L+++++  +ela+ + g+s   + + L++L   GLVe
  KIR61120.1 29 IVLFALSRQPRRPGELADLIgGISHKVLTQTLRRLQAYGLVE 70
                589***************9945******************97 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.3e-05     0.086      30      57 ..      44      72 ..      41      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.3e-05
                HHHHH.TS-HHHHHHHHHHHHHTTSEEEE CS
        GntR 30 Laaef.gVsrttvReALrrLeaeglverr 57
                La+ + g+s+ ++ + LrrL+a glver+
  KIR61120.1 44 LADLIgGISHKVLTQTLRRLQAYGLVERH 72
                55555269*******************97 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.5e-05      0.12      26      54 ..      43      72 ..      22      76 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.5e-05
                HHHHHTT.SSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 26 elAsmlG.ltretvsrilseLkreglisrg 54
                elA+++G ++   ++++l++L+  gl++r+
  KIR61120.1 43 ELADLIGgISHKVLTQTLRRLQAYGLVERH 72
                9******9*******************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 903.75
//
Query:       KIR61121.1  [L=305]
Description: dihydrodipicolinate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-44  151.5   0.0    2.3e-44  151.2   0.0    1.0  1  DHDPS     Dihydrodipicolinate synthetase family


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.2   0.0   1.3e-48   2.3e-44       3     277 ..       8     279 ..       6     291 .. 0.97

  Alignments for each domain:
  == domain 1  score: 151.2 bits;  conditional E-value: 1.3e-48
                 SEEEEE----B-TTSSB-HHHHHHHHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHTTSSEEEEE---SSHHHHHHHHHCCCCCT-SEEE CS
       DHDPS   3 sgiitalvtpfdedgkldkealrklieflinkgvdglvvaGttGEsatlsteekeqlveiaveaakgripviagvGsnstseaiklakkaeeaGadgvl 101
                 +g+++a+ tpf  d  +d+  l++ +++l ++g  g+  + + GE   ls +e++++v+ +v+aa    +v+ gvG+   +++ ++a++a++aGa+gvl
  KIR61121.1   8 RGVLVAITTPFRDDLGVDFDRLQEHVRWLAEAGCHGVTPCASVGEYRALSDDERADVVRATVQAAPPGCAVLPGVGGYGSRQSRRWAEQAAAAGAHGVL 106
                 79************************************************************************************************* PP

                 EE---SS---HHHHHHHHHHHHHCHSS-EEEEE-HHHHSHHHHHHHHHHHHTSTTEEEEEE-SS-CTHHHHHHCCCSTTSEEEES-GGGHHHHHHTT-S CS
       DHDPS 102 avtPYYnkpsqeglyqhfkaiieatdlpvilYnvpsrtgadlspetvkrLaelenivgvKeavgdleevikikkevgkdlviysGddelllsalslGad 200
                 a +P  ++   +++  h++++ +++ lpv+  n p  t +dl+pe ++r ae + iv+v e +gd+++v +i+    +++ +++G+d++ll+ +  Ga+
  KIR61121.1 107 APPPDGYPAGDADVVAHYREVTAVG-LPVVAHNDPYDTRVDLTPELLARVAETDGIVAVEEFSGDVRRVHRIRDL-CPHVDVLAGADDVLLELVLCGAR 203
                 **********************999.*******************************************999998.6899******************* PP

                 EEEESCHHCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCCCCSCCHHHHHHHHCTTSSSBB.--TTS--S-HH CS
       DHDPS 201 GvisvtsniagermrqlikalkeGdlaeaaelnekllplikilfaepnvilvktalellGlvveatlrkPltpleee 277
                 G ++  sn  ++++  l+++ ++Gdla a  l ++l p + +     +v  +k a+ + G   +  +r+P +pl   
  KIR61121.1 204 GWVAGLSNALPRQALRLYDLCAAGDLARALPLYAELHPAFGWGSRPEAVQAIKLAMDCAGRFGGR-CRPPRGPLPPP 279
                 *************************************************************9999.****9998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2688.17
//
Query:       KIR61122.1  [L=60]
Description: hypothetical protein TK50_25485 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       126  (0.00702772); expected 358.6 (0.02)
Passed bias filter:                       94  (0.0052429); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 548.22
//
Query:       KIR61123.1  [L=150]
Description: hypothetical protein TK50_25495 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1135.27
//
Query:       KIR61124.1  [L=363]
Description: Tat (twin-arginine translocation) pathway signal sequence [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-22   80.6   0.0    1.5e-22   80.1   0.0    1.2  1  AP_endonuc_2  Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
      0.019   14.3   1.5      0.036   13.4   1.5    1.4  1  UCR_Fe-S_N    Ubiquitinol-cytochrome C reductase Fe-S subunit
      0.081   12.8   6.1       0.16   11.9   6.1    1.4  1  TAT_signal    TAT (twin-arginine translocation) pathway signa


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   2.5e-26   1.5e-22       2     210 .]      87     309 ..      86     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 2.5e-26
                   HHHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCTT CS
  AP_endonuc_2   2 aaaaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllvlhpGtagagp 98 
                   a +ae+G++ +E++g++++      + +  e+rk+ld++gl        +     ++ + + r     d +++++++a++LG++++ +++     + 
    KIR61124.1  87 ASLAEMGYKEIEFAGYNQHTSILGRQITPTEIRKILDDNGLV-------A----NGT-HTSIR----ADTFQQQLDIAEELGMKNIGTGSD----PT 163
                   5689*****************999******************.......2....233.33446....79********************55....** PP

                   TSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC................HHHHHHHHHHTTTTEEEEEEHHHHHHH........... CS
  AP_endonuc_2  99 kgseeeawerlaeslneladyaekegvklalEtlagsgvelgd................eelarlldavdspnvgvclDtgHllia........... 168
                   ++ ++++w+ +a+ +nel++ a+++ ++l+ ++++ ++++l+d                + l++++ ++d++ v +  D+++++ a           
    KIR61124.1 164 NSAYQSDWDAAADLWNELGRQAKERKMRLYTHNHDVAYSFLLDsgpldangkptrssgvRRLEYFFAKTDPKYVFFECDIYWAYVArhkhtkyinsa 260
                   **************************************************************************************99999999999 PP

                   ......TTTHHHHHHHHHGGEEEEEE.EESS.TTTTSSTTEESTTSSSS CS
  AP_endonuc_2 169 ......eedvddalraladrikhvHikDakg.dlgagrdrhvpigeGei 210
                          +d++  +++  +r  ++H+kD+++ +   ++ ++ p+geG+i
    KIR61124.1 261 gqektsLFDPILNVARRTKRFPLFHAKDGNRnTALPNGYEMIPLGEGDI 309
                   99988888888888888888***********877789999*******97 PP

>> UCR_Fe-S_N  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.5     6e-06     0.036       7      29 ..       9      31 ..       4      33 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6e-06
  UCR_Fe-S_N  7 deptRRDFLyiATgavgaVGaaa 29
                 + tRR+ L + +ga+++ Gaa 
  KIR61124.1  9 AQVTRRRLLAASAGAAAVLGAAG 31
                588******************96 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.1   2.7e-05      0.16       2      23 ..      11      32 ..      10      34 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.7e-05
  TAT_signal  2 lSRRdFLKgsAAaaAAaalggc 23
                ++RR +L +sA+aaA ++++g+
  KIR61124.1 11 VTRRRLLAASAGAAAVLGAAGL 32
                89******77777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2645.44
//
Query:       KIR61125.1  [L=499]
Description: hypothetical protein TK50_25520 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-16   58.3   1.2    6.6e-16   58.3   1.2    5.4  5  Wzy_C     O-Antigen ligase


Domain annotation for each model (and alignments):
>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   4.5      0.37   6.6e+03      20      54 ..      39      77 ..      28      97 .. 0.60
   2 ?   -5.7   8.9         1   1.8e+04      19      51 ..     120     158 ..     109     225 .. 0.54
   3 ?    1.7   2.2      0.01   1.8e+02      15      50 ..     246     280 ..     241     283 .. 0.73
   4 !   58.3   1.2   3.7e-20   6.6e-16       2     155 .]     276     409 ..     275     409 .. 0.90
   5 ?   -0.9   1.7     0.061   1.1e+03      13      52 ..     430     472 ..     426     481 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.37
       Wzy_C 20 igllvalivlliifykrri....pfllllgilvgvilli 54
                + +++a+ v+l+++   r+    p ++l+g++vgv++l 
  KIR61125.1 39 LCAVAAVAVGLAATGGGRVgavlPLAVLAGLAVGVLALT 77
                444555555555555555555545555555666555543 PP

  == domain 2  score: -5.7 bits;  conditional E-value: 1
       Wzy_C  19 iigl..lvalivlliifykrri....pfllllgilvgvi 51 
                 i+++  l+a +++l++ +++r     + l+++++lvg+ 
  KIR61125.1 120 ILAVlfLLAAGLWLAAQLRQRGrlrgSPLGVAMLLVGAT 158
                 555522333333333334444433332222222222222 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.01
       Wzy_C  15 sRsgiigllvalivlliifykrripfllllgilvgv 50 
                 + + ++ ++v+++++++ ++ rr+ +l+l ++l++ 
  KIR61125.1 246 TFGRYLMFMVIFGFGIFRYLSRRL-RLGLGALLAAS 280
                 55679999********99999999.55555555443 PP

  == domain 4  score: 58.3 bits;  conditional E-value: 3.7e-20
       Wzy_C   2 alllsllalflstsRsgiigllvalivlliifykrripfllllgilvgvilliilfvlstnletlknitkafgkldkkkgkdksgssRlyiwkralpli 100
                 +l+ sll+l+l+++Rs+i+g++++l+v+ +++  rr+   l+++ lv+v+ +++l ++  ++ +l+  t   g       + ++  +R+ +w++ ++l+
  KIR61125.1 276 LLAASLLFLLLTNTRSAILGAGLGLLVVAVLHRSRRM---LVALCLVAVAGVALLPSVAHRFGQLADSTAVGG-----GPTGNTLAWRVGYWSEIVSLA 366
                 578899*************************999999...777778888888888899999999998876666.....88888889************* PP

       Wzy_C 101 kdspilGtGvfdfpqgdligkyyaydtpnivvdkaHNlyLqilvetGiiGlvlfl 155
                 +++p++G+G            +++ +      +k+HN +L   vetG+ Gl+++l
  KIR61125.1 367 NRNPVTGIG------------PNMTKFEADEAKKPHNDFLRAYVETGLAGLLAYL 409
                 *********............9999999999*********************986 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.061
       Wzy_C  13 stsRsgiigllvalivlliifykrri...pfllllgilvgvil 52 
                 s  R+  ig+l+  ++++++     +   +  l+ +++ ++++
  KIR61125.1 430 SLGRGIAIGFLGCAVAFVAVSAASNVisnVVTLWYFAAFAAAA 472
                 6678888999888888888777777766645555554443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3540.91
//
Query:       KIR61126.1  [L=353]
Description: hypothetical protein TK50_25525 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-07   29.9   0.2      5e-07   29.9   0.2    2.5  4  Wzz           Chain length determinant protein
  ------ inclusion threshold ------
      0.019   14.6   3.1       0.03   13.9   3.1    1.2  1  Exonuc_VII_L  Exonuclease VII, large subunit
        3.2    8.2   9.4        2.1    8.8   1.2    2.9  2  DUF2564       Protein of unknown function (DUF2564)


Domain annotation for each model (and alignments):
>> Wzz  Chain length determinant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.2   8.3e-11     5e-07       5      91 ..       3      88 ..       1      89 [. 0.86
   2 ?   -1.2   0.2      0.45   2.7e+03      41      68 ..     167     200 ..     157     215 .. 0.63
   3 ?   -2.5   0.1       1.1   6.4e+03      69      78 ..     256     265 ..     229     284 .. 0.49
   4 ?   -3.5   0.1       2.2   1.3e+04      26      32 ..     292     298 ..     273     304 .. 0.51

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 8.3e-11
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EEEEEEEES--CHHH.HHHHHHCC...HHHHHHHHHHHHHHHHHSSSS--EEEEE CS
         Wzz  5 LieLlsvLwkrkklIilvtllfallaviyaflatpkYtataqilvpekkqv.eassltaq...dvqanlqlasteieilkSrdvlekvise 91
                +++ l+v ++r +l++ ++l++ ++a+++++l +++Y at +++ p   +  +     aq     qa  q a +++   +S++v ++v+ +
  KIR61126.1  3 IVDYLRVARRRLWLLVGIPLVAGAAAALVVLLGPQQYAATSYVAAPALVGGsA-----AQqytGTQAANQFAAAFAAAVTSPQVVDQVAAD 88
                67889999****************************************99522.....222446666669999**************9876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.45
                 EEEEEEEES--CHHH...HH.HHHHCC..HHHHH CS
         Wzz  41 Ytataqilvpekkqv...ea.ssltaq..dvqan 68 
                 ++ t  + +p+k  +   ++  sl +q  ++qa+
  KIR61126.1 167 WEKTNKVSQPDKLYQstlQEiASLRQQqlQMQAV 200
                 6666666666665544553335566665555554 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.1
                 HHHHHHHHHH CS
         Wzz  69 lqlasteiei 78 
                  q++ +  e 
  KIR61126.1 256 AQSQAADPEK 265
                 1222233333 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 2.2
                 XXXXXXX CS
         Wzz  26 fallavi 32 
                 ++llav+
  KIR61126.1 292 GLLLAVL 298
                 2233332 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   3.1     5e-06      0.03     143     268 ..     137     270 ..     102     276 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5e-06
  Exonuc_VII_L 143 aeleeqleelerrlekaikrlleekkqrlekl..asrlkspeellerkrqrldeleerleralkkq.....lkkkrerleelkerlk...ekleekk 229
                     +++q+  +++++++a+++l  ++ + ++ +  ++++++p++l+++  q++ +l+++  + ++       +++++e ++  ++rl     kl + +
    KIR61126.1 137 FLFASQVGIATDEVKTATDELT-TATRAINDWekTNKVSQPDKLYQSTLQEIASLRQQQLQ-MQAVgnargANAAAESISAGQKRLDglgPKLPDYQ 231
                   4456666666666776666544.45567777722345579999999999999998775544.22222344555555555555555534666677777 PP

  Exonuc_VII_L 230 erlkklkerlelleekkerleeleeklealsplkvLkrG 268
                   + ++++ + ++ l+++++rl+++ ++ +a++p+kv + G
    KIR61126.1 232 ALIAQRDSATSALASARQRLQQARAQSQAADPEKVTSVG 270
                   777777777779*********************997665 PP

>> DUF2564  Protein of unknown function (DUF2564)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.0      0.02   1.2e+02      19      42 ..     143     168 ..     140     199 .. 0.70
   2 ?    8.8   1.2   0.00035       2.1      32      58 ..     238     264 ..     234     271 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.02
     DUF2564  19 vGqATmsm..dpdqlesAtqAiedAr 42 
                 vG AT +     d l +At+Ai+d  
  KIR61126.1 143 VGIATDEVktATDELTTATRAINDWE 168
                 78888654115688999999998854 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00035
     DUF2564  32 esAtqAiedAreqlssaeehatgvdee 58 
                 +sAt A+  Ar+ l++a+++ +  d e
  KIR61126.1 238 DSATSALASARQRLQQARAQSQAADPE 264
                 78****************999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1095  (0.0610742); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2400.94
//
Query:       KIR61127.1  [L=508]
Description: hypothetical protein TK50_25530 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-20   71.8   8.0      6e-20   71.8   8.0    2.0  2  Polysacc_synt    Polysaccharide biosynthesis protein
      1e-16   61.1   0.5      1e-16   61.1   0.5    1.9  2  Polysacc_synt_3  Polysaccharide biosynthesis protein
    2.1e-15   57.0  19.8    2.1e-15   57.0  19.8    3.4  3  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai
      3e-12   46.5  17.0    6.6e-10   38.9   5.4    2.7  2  MatE             MatE


Domain annotation for each model (and alignments):
>> Polysacc_synt  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   8.0   1.3e-23     6e-20       2     272 ..       2     277 ..       1     279 [. 0.88
   2 ?   -1.9   2.1      0.39   1.7e+03     149     188 ..     365     398 ..     301     437 .. 0.73

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 1.3e-23
  Polysacc_synt   2 lkgvivlllsqlitkllafvtlvylarilgpegfGlvalalaivtllviltdlGlnaalvreiakyrek......kelvslil.lnvllvllvlvl 90 
                    ++g   +ll+ l+++ + f+++ +lar+lg  ++G +a+++a+++l+ +l+ +G+ a l+r++a + ++      + +++l+l +++ ++++++ +
     KIR61127.1   2 ARGGGLNLLGALLSQAAVFLIMLLLARVLGIREVGRYAQCYAVLSLAGLLSLSGFRAGLTRFVAVHLADadapalRGTIRLGLaVSAGSSVVLAGA 97 
                    57888999*******************************************************************666666653799********* PP

  Polysacc_synt  91 lfllllliaaflglpelavlylilalmllllvgvasfrrglfqglermkya.avsqvveqlsrvilvliavflfldivaavlgavlaalvggivsl 185
                    l++ ++++a+ l++p l++ +++ al+l+ + +v        +g++ ++++ ++ q+ e  +r+ l+++a+ ++  +++a +++v+a   +++++l
     KIR61127.1  98 LAAGAPWLADRLHDPGLVTGLRLVALTLP-ASTVCEAALAATRGWRTQRPFtFIGQLYEPGVRLLLTALALVTGVGLTGAFWALVVAGWSAALLAL 192
                    *****************************.99999999999****999886268999999999999999998888877777777777777777777 PP

  Polysacc_synt 186 avlrkkf.rprfvilslklvrellsfsapltisslaillytyidsillglllgaeavGiYnaayqllvaisgllapivtaalfPvfse 272
                    + l +   r++ + +  ++  el++fs+   +ssl+++ + ++d++llg++++++  G Yn+a +l++++  +lap +  a  P+++ 
     KIR61127.1 193 LALGRMVrRVPPARP-VHRPGELFRFSTVSWVSSLSSTGLIWVDTLLLGFFANPD-IGVYNVATRLVTVAIFVLAPVNA-AFGPYLAH 277
                    777766634444444.6778********************************986.7*********9999888887777.99999875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.39
  Polysacc_synt 149 qlsrvilvliavflfldivaavlgavlaalvggivslavl 188
                     ++ +  vl+       ++ ++++  ++a ++  +sl+v+
     KIR61127.1 365 LVALLLNVLLN------LWLIPAYGIVGAAAAWSASLIVV 398
                    44444444444......44444444444444444444443 PP

>> Polysacc_synt_3  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.5   2.2e-20     1e-16       1     283 [.      25     320 ..      25     324 .. 0.83
   2 ?   -2.5   0.7      0.52   2.3e+03      89     132 ..     393     436 ..     357     442 .. 0.63

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 2.2e-20
  Polysacc_synt_3   1 vLARLLspedFGvvaialvvislanlfvdmGlssal.....iqkedltee....dlstvftfnlvlgllialvlfllapliasfynqpelvtvl 85 
                      +LAR L   + G +a + +v+sla l++ +G+   l     ++  d+++      ++    ++  +++++a +l++ ap++a+ + +p lvt l
       KIR61127.1  25 LLARVLGIREVGRYAQCYAVLSLAGLLSLSGFRAGLtrfvaVHLADADAPalrgTIRLGLAVSAGSSVVLAGALAAGAPWLADRLHDPGLVTGL 118
                      69**************************9999876622222344466665555555666778888999************************** PP

  Polysacc_synt_3  86 rvlalvlilsglssvqea.....llrrelkFkklfkitlvssvvgvivaivlAllglgvwALvigtllssllslvllwlaskwrprlkfslksl 174
                      r++al+l  s+++    a     + +r ++F  + +   v  ++++++ ++ + l+   wALv+    ++ll l++l  +++ r+ +   +++ 
       KIR61127.1 119 RLVALTLPASTVCEAALAatrgwRTQRPFTFIGQLYEPGVRLLLTALALVTGVGLTGAFWALVVAGWSAALLALLALGRMVR-RVPPARPVHRP 211
                      *******9999888777622222567888888888888888888888888888888899*******9988888777766665.55566899*** PP

  Polysacc_synt_3 175 kelfsfglklllsnllnylarnldnlliGkvlssaaLGlYsvakrlaslpvaeitsviakVlfPalSrl..qddkkklrelylkvlrlialivl 266
                       elf+f+    +s+l  +    +d+ll G  + + ++G+Y+va rl+++ +  + +++++ + P l++l  + d +++r++y  ++  +  ++l
       KIR61127.1 212 GELFRFSTVSWVSSLSSTGLIWVDTLLLGF-FANPDIGVYNVATRLVTVAIF-VLAPVNAAFGPYLAHLyhRGDLDDVRRVYAVATGWVVRLSL 303
                      *****************************5.66779***********98875.55799*********9855789******************** PP

  Polysacc_synt_3 267 Piavglavvaellvkvl 283
                      P++v l v+   l++v+
       KIR61127.1 304 PAFVALLVLPGDLLRVF 320
                      ******99987777766 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.52
  Polysacc_synt_3  89 alvlilsglssvqeallrrelkFkklfkitlvssvvgvivaivl 132
                      a  ++++ + +vq   l+  l F+  ++  l++ v+++++++++
       KIR61127.1 393 ASLIVVNVARVVQVRHLTGALPFTVGMAKGLAAGVAALLAGLLV 436
                      44556666666666666666666666666666666666666655 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   8.8      0.18     8e+02      54     141 ..       8     100 ..       6     102 .. 0.67
   2 !    5.8   6.2    0.0029        13      44     135 ..     161     263 ..     120     271 .. 0.71
   3 !   57.0  19.8   4.7e-19   2.1e-15       2     142 ..     331     466 ..     330     467 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.18
  Polysacc_synt_C  54 givGaaiatvlallvvavlnlyalrrllgikl..ellrrllkpllaalvmgivvylllllllglllla...alalllavlvgalvYlllllll 141
                      +++Ga+++ ++ +l++++l  ++  r++g       + +l  +l ++ + ++++ +++  l  +  +a   ++ l+lav +g  v l+ +l+ 
       KIR61127.1   8 NLLGALLSQAAVFLIMLLLARVLGIREVGRYAqcYAVLSLAGLLSLSGFRAGLTRFVAVHLADADAPAlrgTIRLGLAVSAGSSVVLAGALAA 100
                      578999999999999999998888888887776633444445555555555554444444444444335556799999999999999888765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0029
  Polysacc_synt_C  44 iln.llliplfgivGaaiatvlallvvavlnlyalrrllgikl.........ellrrllkpllaalvmgivvylllllllglllla..al.all 124
                      +l+ l l+   g++Ga +a v+a   +a+l l al r ++  +         el+r   +  +++l   ++++ +  lllg++ ++  ++ +++
       KIR61127.1 161 LLTaLALVTGVGLTGAFWALVVAGWSAALLALLALGRMVRRVPparpvhrpgELFRFSTVSWVSSLSSTGLIW-VDTLLLGFFANPdiGVyNVA 253
                      44404455889**************************999888888887777555555555555555555544.67777776666644222333 PP

  Polysacc_synt_C 125 lavlvgalvYl 135
                        + v +++++
       KIR61127.1 254 TRL-VTVAIFV 263
                      333.4444443 PP

  == domain 3  score: 57.0 bits;  conditional E-value: 4.7e-19
  Polysacc_synt_C   2 LailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllliplfgivGaaiatvlallvvavlnlyalrrllgiklellrrllkpl 95 
                       +ilal+ ++ + + +++++L++ gr+ + +  +++++l++++lnl+lip +givGaa+a+ ++l+vv v  ++ +r+l+g  + +   + k l
       KIR61127.1 331 TVILALGQLVNAATGPCGTVLNMSGRVALNMADNLVALLLNVLLNLWLIPAYGIVGAAAAWSASLIVVNVARVVQVRHLTGALP-FTVGMAKGL 423
                      589*********************************************************************************.566666766 PP

  Polysacc_synt_C  96 laalvmgivvylllllllgllllaalalllavlvgalvYlllllllr 142
                      +a+++  ++ + l+++l++ +++     ++++ + ++vYl+ +l+l+
       KIR61127.1 424 AAGVAALLAGL-LVRWLVPGWPGR---PAAGLTAIVAVYLGTVLALG 466
                      66666666655.777777666654...67777788999999999987 PP

>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   3.8   1.7e-05     0.075       6     131 ..      13     134 ..       9     152 .. 0.80
   2 !   38.9   5.4   1.5e-13   6.6e-10       5     160 ..     224     376 ..     221     377 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.7e-05
        MatE   6 nllesllslidtllvgrlgskalAavsialsilsllfv.fllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqilslftq 103
                  l +  ++li+ ll+  lg ++++ ++ +  +lsl ++  l g+ ++lt +v+  l   +  +++ ++r gl ++++ s+++a ++ + +++++  +++
  KIR61127.1  13 LLSQAAVFLIMLLLARVLGIREVGRYAQCYAVLSLAGLlSLSGFRAGLTRFVAVHLADADAPALRGTIRLGLAVSAGSSVVLAGALAAGAPWLADRLHD 111
                 456666667766666666********************8899*******************************************99999999999977 PP

        MatE 104 deevlelakrylrililgipalalqlvl 131
                 +  v     + lr+++l++pa  +++++
  KIR61127.1 112 PGLV-----TGLRLVALTLPASTVCEAA 134
                 7643.....3345555555555555555 PP

  == domain 2  score: 38.9 bits;  conditional E-value: 1.5e-13
        MatE   5 enllesllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqilslftq 103
                 ++l  + l  +dtll+g +   +++++++a++++ + +++l  +++a  +  ++ +  ++ +++++++ +++ +++ lsl++++++l+++ ++l++f+ 
  KIR61127.1 224 SSLSSTGLIWVDTLLLGFFANPDIGVYNVATRLVTVAIFVLAPVNAAFGPYLAHLYHRGDLDDVRRVYAVATGWVVRLSLPAFVALLVLPGDLLRVFGG 322
                 666777777899*************************************************************************************98 PP

        MatE 104 deevlelakrylrililgipalalqlvlsgilrgagktkvplyislislllniplny 160
                 +    + ++    il+lg++++a + ++ ++l+  g++ + ++ +l++llln++ln 
  KIR61127.1 323 EV---ATGAAVTVILALGQLVNAATGPCGTVLNMSGRVALNMADNLVALLLNVLLNL 376
                 76...577788889*****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3649.85
//
Query:       KIR61128.1  [L=494]
Description: hypothetical protein TK50_25540 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0046   16.9   1.9      0.019   14.9   0.1    2.5  2  Glyco_hydro_44  Glycoside hydrolase family 44
     0.0079   14.8   0.0       0.01   14.4   0.0    1.1  1  Glyco_hydro_39  Glycosyl hydrolases family 39
  ------ inclusion threshold ------
       0.16   11.3   0.1        4.5    6.5   0.0    2.6  2  Glyco_hydro_42  Beta-galactosidase


Domain annotation for each model (and alignments):
>> Glyco_hydro_44  Glycoside hydrolase family 44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   3.2e-06     0.019      81     203 ..     138     251 ..     110     256 .. 0.70
   2 ?   -1.2   0.2      0.27   1.6e+03     216     232 ..     293     309 ..     284     310 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.2e-06
                     EES--SS---SS--SSSSEEEHHH.....HHHHHHHHH--TSTTS--EEEESS-GGGHHHH-TTT--S---HHHHHHHHHHHHHHHHHH-TT-EE CS
  Glyco_hydro_44  81 vkikktaelsltpdptdtsvyadeeftkewvnhlvkklgsasatgvkfysLDNEpelWssTHrdvhpekvtydellertidlAkavkaadpdaev 175
                     +k++++     + + t+++++ d    +++v++lv+++   +  gv+ y++ NE++      +     + +y      +++ A+a+++adp+a+v
      KIR61128.1 138 AKFTRG-----QANKTESAMPRDLAAYQAFVRALVQRY---APYGVREYAIENEVNAQ----QYWAGSPEDYRR---LVTAAAEAIRSADPQAKV 217
                     444444.....677888888999999999********9...679**********9753....233344455555...56789************* PP

                     E..EEEE-SHHHHTTT-......TTCT..T-SSH CS
  Glyco_hydro_44 176 l..Gpaswgwtayfqsaa....epdkaahgnvwf 203
                     +  G +s+ +   + +      +pd+a  +++++
      KIR61128.1 218 VdsGMSSVAYGMGVADRLlragQPDQAVAAYQAY 251
                     7445544444333222223444777766666655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.27
                     HHHTS-S-SEEEEEE-- CS
  Glyco_hydro_44 216 kkaGkRlLDvldlHyYp 232
                     k    R++Dv  lH+Y 
      KIR61128.1 293 KLLDDRVVDVRQLHFYE 309
                     555679**********6 PP

>> Glyco_hydro_39  Glycosyl hydrolases family 39
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.7e-06      0.01     125     199 ..     150     217 ..     104     230 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-06
  Glyco_hydro_39 125 vtppkqvkeWkeLisllarryisRYGldevskWnFevWnePdlkdFdkvattkeylklYkaaaealkkvseelkv 199
                      + p++  +++  +++l++ry   YG   v+++  e  ne + ++++ ++  ++y +l  aaaea++ ++++ kv
      KIR61128.1 150 SAMPRDLAAYQAFVRALVQRYA-PYG---VREYAIE--NEVNAQQYW-AGSPEDYRRLVTAAAEAIRSADPQAKV 217
                     4567888888877777777663.466...6666655..*****9986.677899*****************9998 PP

>> Glyco_hydro_42  Beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0   0.00075       4.5      30      69 ..      89     128 ..      65     213 .. 0.79
   2 ?   -1.4   0.0      0.19   1.1e+03     312     357 ..     352     397 ..     335     410 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00075
                     -TT-HHHH-SBTTB---HHHHHHHHHHHCTT-EEEEE-ST CS
  Glyco_hydro_42  30 gefaWaklePeegkydFewLdevldllekagikviLatpt 69 
                      e +W+ +e ++g+ dF+  d++ ++  + gi   L   t
      KIR61128.1  89 HELSWCDIEKTQGSPDFSAVDRIAERSRQLGIALHLKIRT 128
                     5889999999999999999999999999999988776544 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.19
                     TTHHHHHHHHHHHTT-S-EEEC-S...B--SSSTTTTS--SB-TTS.-B CS
  Glyco_hydro_42 312 pGavrlwslqavAhGadavlyFqw...rqsrggsEkfhsgvlehvgsek 357
                     ++ +     q vA G++ vl+  +     +r+g+E   +g+l+++g ++
      KIR61128.1 352 DE-MVKVVSQLVAGGIHEVLWLPLaynPDNRAGAEV-RYGLLDPDG-TQ 397
                     33.334445678*******99876445566777776.788888888.43 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3487.33
//
Query:       KIR61129.1  [L=264]
Description: hypothetical protein TK50_25545 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-40  138.7   0.2    7.2e-40  137.7   0.2    1.5  1  Sulfotransfer_3  Sulfotransferase family
    2.6e-10   40.2   0.0    5.9e-09   35.8   0.0    2.5  1  Sulfotransfer_1  Sulfotransferase domain


Domain annotation for each model (and alignments):
>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   0.2     8e-44   7.2e-40       1     216 [.      15     196 ..      15     197 .. 0.88

  Alignments for each domain:
  == domain 1  score: 137.7 bits;  conditional E-value: 8e-44
                      -EEEE--TTSSHHHHHHHHHTSTTEE--S--.--TT.-SBHHHHHHHHTT-S...TTTHHHHHHHHHHT--HHHHHHHHHHHHHTT-BHHHHHH CS
  Sulfotransfer_3   1 PifivGlpRSGTTlLhrlLaahpdvripeetlfvaprllalleawskdgrelrrlldagltqeeaelphledaeepeedlqllraalasvilea 94 
                      Pif vG++RSGTT+L+ +L++h++v +++et f+a+ + +        gr++ rl + g+ +e                +    a++   i   
       KIR61129.1  15 PIFLVGCQRSGTTMLRLVLDSHSRVSCGPETRFLAD-MQRI------VGRDWERLARFGFPRE---------------YWLGRIADFFGGIQAD 86 
                      9******************************55444.3333......3688999888888777...............4555567777778888 PP

                      HHHHHTTTSEEEEEESSGGG-HHHHHHHBSSEEEEEEE--H.HHHHHHHHHTT----------..-HHHHHHHHHHHHHHHHHHHHHHS-TTSE CS
  Sulfotransfer_3  95 larvpsyarwlvdKsPshlfrldlllelfPdAkfihlvRdpvdtvlssyvslfgkkresysedsldeledaleewarayerllaararlppdrf 188
                      +ar ++++rw  dK+P ++ ++d+l+e+fPdA+f+h+vRd++d v+s  +++       +s      + +++ +w r ++ ++a  arlp+dr+
       KIR61129.1  87 YARSRGKTRW-ADKTPLYALSIDFLAEVFPDAQFVHVVRDGRDVVVSHRKRF-----GYWS------AVKCVVKWPRYIRIARASGARLPADRY 168
                      8999999997.89****************************99999999999.....4688......3379*********************** PP

                      EEEEHHHHHH-HHHHHHHHHHHHT---- CS
  Sulfotransfer_3 189 ldvrYedLvadpegtlrriyeflglpwd 216
                      +++rYe+ v+dpe+ +r++ eflg pw+
       KIR61129.1 169 HELRYEEAVTDPEKAMRALFEFLGEPWE 196
                      ***************************7 PP

>> Sulfotransfer_1  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   6.6e-13   5.9e-09       3     204 ..      15     201 ..      13     210 .. 0.74

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 6.6e-13
                      SEEEEESTTSSHHHHHHHHHHHHTTTCC......HHHTSSGHCT-.HHHSCBTTHECCTSGCCGTTECCCHHHTTTEEHHHHHHHSTSS.EEE. CS
  Sulfotransfer_1   3 dvlivtypKSGTtwlqellslitsegdf......ekaeepalfna.rdrspfLelydlyfpnslkppdhlrsyshvaekvvrlralesprllk. 88 
                       +++v+ ++SGTt+l   l+ +  +         +++++  + ++ ++r+    + ++y + ++        +  ++ +++r r     r  + 
       KIR61129.1  15 PIFLVGCQRSGTTMLRLVLDSHSRVSCGpetrflADMQR--IVGRdWERLARFGFPREYWLGRIADF-----FGGIQADYARSRGK--TRWADk 99 
                      69*****************99544433345564444444..44577899999998777777555444.....33344444444444..444442 PP

                      E...GGGS.CHHH...HTT-EEEEEE--HHHHHHHHHHHHHHBTTSTTT-S-HHHHHHHHHTTHSTTC-HHHHHHHHHHHTTTTTEEEEEHHHH CS
  Sulfotransfer_1  89 tHlplkllpksll...dsnlKiiylvRnpkdvavSryhfsrslkklkepetpfeeffdlflegrvvcgsyfdhvkswlklrkkgnvlflrYEdl 179
                      t  pl+ l   +l    +++  +++vR+ +dv+vS    +  +      +              v +  y++ ++    + + ++++ lrYE+ 
       KIR61129.1 100 T--PLYALSIDFLaevFPDAQFVHVVRDGRDVVVSHRKRFGYWSA---VK------------CVVKWPRYIRIARASGARLPADRYHELRYEEA 176
                      3..666666666422269*****************9888866654...33............47889999999999999*************** PP

                      HHHHHHHHHHHHHHTT--..HHHHH CS
  Sulfotransfer_1 180 kkdpakeikkiaeFlGiplteeele 204
                       +dp+k ++ ++eFlG p ++++l+
       KIR61129.1 177 VTDPEKAMRALFEFLGEPWEAGVLD 201
                      ******************8887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1973.79
//
Query:       KIR61130.1  [L=317]
Description: hypothetical protein TK50_25550 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-10   42.3   0.0    0.00044   20.7   0.0    2.7  2  Sulfotransfer_3  Sulfotransferase family
    0.00045   19.8   0.0      0.043   13.3   0.0    2.1  2  Sulfotransfer_1  Sulfotransferase domain


Domain annotation for each model (and alignments):
>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.9e-08   0.00044       1      34 [.      72     105 ..      72     148 .. 0.79
   2 !   19.0   0.0   1.6e-07    0.0014     189     217 .]     243     271 ..     156     271 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.9e-08
                      -EEEE--TTSSHHHHHHHHHTSTTEE--S--.-- CS
  Sulfotransfer_3   1 PifivGlpRSGTTlLhrlLaahpdvripeetlfv 34 
                      P+  vGl+RSGT++L r L+a+p+v++  e+ + 
       KIR61130.1  72 PVYLVGLQRSGTNMLTRGLDADPSVEVRNENDRA 105
                      899*********************9988888443 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.6e-07
                      EEEEHHHHHH-HHHHHHHHHHHHT----G CS
  Sulfotransfer_3 189 ldvrYedLvadpegtlrriyeflglpwdd 217
                      l  +Y+ Lvadp g +rr+++fl+lp+d+
       KIR61130.1 243 LLCSYDLLVADPAGSTRRLCAFLDLPYDP 271
                      5569**********************985 PP

>> Sulfotransfer_1  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0     0.002        18       4      38 ..      73     107 ..      71     132 .. 0.79
   2 !   13.3   0.0   4.8e-06     0.043     165     197 ..     236     268 ..     157     278 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.002
                      EEEEESTTSSHHHHHHHHHHHHTTTCCHHHTSSGH CS
  Sulfotransfer_1   4 vlivtypKSGTtwlqellslitsegdfekaeepal 38 
                      v +v++++SGT++l + l++ +s++  ++ +++++
       KIR61130.1  73 VYLVGLQRSGTNMLTRGLDADPSVEVRNENDRAVF 107
                      679***********999999666665554454444 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 4.8e-06
                      HTTTTTEEEEEHHHHHHHHHHHHHHHHHHTT-- CS
  Sulfotransfer_1 165 lrkkgnvlflrYEdlkkdpakeikkiaeFlGip 197
                      l++++  l+ +Y+ l +dpa+++++++ Fl++p
       KIR61130.1 236 LADRPDTLLCSYDLLVADPAGSTRRLCAFLDLP 268
                      67788899************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2101.43
//
Query:       KIR61131.1  [L=414]
Description: hypothetical protein TK50_25555 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-33  115.7   0.0    2.1e-33  115.3   0.0    1.1  1  Glycos_transf_1  Glycosyl transferases group 1
    1.7e-29  102.9   0.2    3.9e-29  101.8   0.2    1.6  1  Glyco_trans_1_4  Glycosyl transferases group 1
      6e-18   65.4   2.8      6e-18   65.4   2.8    2.3  2  Glyco_transf_4   Glycosyltransferase Family 4
    3.3e-17   63.4  10.8    3.3e-17   63.4  10.8    3.0  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    1.2e-11   44.9   0.0    3.5e-11   43.4   0.0    1.8  2  Glyco_trans_1_2  Glycosyl transferases group 1
     0.0084   16.1   0.0      0.016   15.2   0.0    1.4  1  Glyco_trans_4_2  Glycosyl transferase 4-like
  ------ inclusion threshold ------
        0.1   12.3   0.0       0.19   11.4   0.0    1.5  1  Glyco_transf_5   Starch synthase catalytic domain


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.0   8.3e-37   2.1e-33      18     172 .]     235     385 ..     228     385 .. 0.97

  Alignments for each domain:
  == domain 1  score: 115.3 bits;  conditional E-value: 8.3e-37
                      EEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESS.BSS-HHHH CS
  Glycos_transf_1  18 ilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsis.EgfGivll 110
                      +++ grl +eKgvd+li+a+ +l+    ++v+l +aG+g+ ++ l +la  +    +v+f+g++++ +l+el ++a ++++ps++ E  ++++l
       KIR61131.1 235 VVFAGRLAPEKGVDVLIEALTRLP----DDVVLEVAGDGPARDGLTELARRRAP-GRVRFHGRLDKARLHELVRSATVVAVPSRWnENQPMAVL 323
                      689*******************96....79******************887766.9************************************** PP

                      HHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHHHH CS
  Glycos_transf_1 111 EAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenarkr 172
                      EA  +g+pv+as+ gg++e+v+ g++G +v++ ++ ala++++++l d++++ r+g+++r r
       KIR61131.1 324 EAYGCGVPVVASDLGGLPELVTAGVDGEVVPADDPVALAAGLARVLADPQRAYRMGRAGRAR 385
                      **********************************************************9975 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   0.2   1.5e-32   3.9e-29       4     134 .]     235     371 ..     233     371 .. 0.91

  Alignments for each domain:
  == domain 1  score: 101.8 bits;  conditional E-value: 1.5e-32
                      EEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---...HHHHHHHT.T-T.TEEEE---..THHHHHHHH-SEEEE--...---SHHHHHH CS
  Glyco_trans_1_4   4 ilfvGrleenvkgvdllleavpllrkkdvrlvivGdgp.rpeeleelaa.gleerveftGfv..edlaellaaadvfvaPs...egfglkllEa 90 
                      ++f Grl +++kgvd+l+ea+ +l  +dv l ++Gdgp r+  l ela+ +   rv+f+G++  + l el+++a+v+ +Ps   e  ++++lEa
       KIR61131.1 235 VVFAGRL-APEKGVDVLIEALTRLP-DDVVLEVAGDGPaRD-GLTELARrRAPGRVRFHGRLdkARLHELVRSATVVAVPSrwnENQPMAVLEA 325
                      79*****.566**************.55**********665.8887776554467*******6445***************9999********* PP

                      HHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  91 maaglpvVatdvggiaevv..gengllvppgdpealaeailrLled 134
                        +g+pvVa+d+gg++e+v  g++g +vp++dp ala+ ++r+l+d
       KIR61131.1 326 YGCGVPVVASDLGGLPELVtaGVDGEVVPADDPVALAAGLARVLAD 371
                      ******************************************9987 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   2.8   2.3e-21     6e-18       2     168 ..      14     222 ..      13     224 .. 0.80
   2 ?   -1.9   0.1       1.1   2.9e+03     111     143 ..     282     314 ..     267     323 .. 0.73

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 2.3e-21
  Glyco_transf_4   2 GGverhvleLaraLarrGheVtvv...tpgddgpleeev........elvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahs.paal 84 
                     GG+e ++l++a+  + +G eV ++    p+ d p+++++        +   r+ +++    +r  +s+a++r l+r+l++++pDvvH h+ ++ l
      KIR61131.1  14 GGAEGYLLDVAELQRGDGDEVAFFgmtHPDNDAPTPYARhfpsrvelDPAPRGAGPRAAAAARMIWSPASRRGLARVLDEFRPDVVHLHNiYHQL 108
                     9***********************886555555555555788776665555555566666777778899999*****************946667 PP

  Glyco_transf_4  85 gaallalrrrlgiplVltvHglye................................krllkarlkplsrllralerrl......lrradrviavS 141
                       ++la+ r+ ++p V t+H+                                           +++   l a+e +l      +  +++++ +S
      KIR61131.1 109 SPSVLAAVRAARVPAVMTLHDYKLacpsyqmldrgavcdacvtggplraarrrckdG-------SFGASSLLAVESWLhrttraYGPVQAFVSPS 196
                     7899999999***********************************999987655431.......222222222222222223669********** PP

  Glyco_transf_4 142 eatadelrerygvppekitVipnGvDl 168
                     +++ad +r+  gv p++++V+ + vD+
      KIR61131.1 197 RFLADVMRR-AGVFPDRMHVVSHFVDV 222
                     *********.****************8 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
  Glyco_transf_4 111 llkarlkplsrllralerrllrradrviavSea 143
                     + ++r ++  rl +a +  l+r+a  v ++S++
      KIR61131.1 282 RAPGRVRFHGRLDKARLHELVRSATVVAVPSRW 314
                     455555666677777777778888888888886 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4  10.8   1.3e-20   3.3e-17       1     157 [.      14     216 ..      14     218 .. 0.74
   2 ?   -4.5   9.0         7   1.8e+04     120     139 ..     295     314 ..     230     412 .. 0.50

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 1.3e-20
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvlt...papapgapeleedgvrvhrlpvprrpspladlaal........ralrrllrqrrerpdvvhahs.p 82 
                      gG++ y  ++a+ ++ +G eV  +    p+ +++ p +++   rv   p+pr+ +p+a +aa         r+l+r+l  +++rpdvvh+h+ +
       KIR61131.1  14 GGAEGYLLDVAELQRGDGDEVAFFGmthPDNDAPTPYARHFPSRVELDPAPRGAGPRAAAAARmiwspasrRGLARVL--DEFRPDVVHLHNiY 105
                      89*********************987564444445557777777776788888777766444345666666999****..************55 PP

  Glyco_trans_4_4  83 t..aglaarlarrrrgiplvvtlh..............................glllrrgsgavrrly...raler..rllrradavlvvsea 139
                      +  ++++ ++ r ++++p v tlh                               + + +gs  + +l+    +l+r  r++  + a++++s++
       KIR61131.1 106 HqlSPSVLAAVR-AARVPAVMTLHdyklacpsyqmldrgavcdacvtggplraaRRRCKDGSFGASSLLaveSWLHRttRAYGPVQAFVSPSRF 198
                      455555555555.88*********999999988888887776666555443321122333344444444455666667799999********** PP

  Glyco_trans_4_4 140 eaeelralgvpadrvvvv 157
                      +a+ +r+ gv +dr++vv
       KIR61131.1 199 LADVMRRAGVFPDRMHVV 216
                      *****************9 PP

  == domain 2  score: -4.5 bits;  conditional E-value: 7
  Glyco_trans_4_4 120 ralerrllrradavlvvsea 139
                      +a  + l+r+a +v v+s++
       KIR61131.1 295 KARLHELVRSATVVAVPSRW 314
                      22222333333333333332 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.5   9.1e+03      70      83 ..      83      96 ..      74      99 .. 0.81
   2 !   43.4   0.0   1.4e-14   3.5e-11       5      90 ..     311     399 ..     305     401 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.5
  Glyco_trans_1_2 70 aeaarervlaehty 83
                     ++++ +rvl e++ 
       KIR61131.1 83 SRRGLARVLDEFRP 96
                     78999999999876 PP

  == domain 2  score: 43.4 bits;  conditional E-value: 1.4e-14
  Glyco_trans_1_2   5 psrses.pnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydhraeql 90 
                      psr ++   + ++Ea++cG++++++d  gl+el+t g ++ ++   d+  la+ ++++la+p+++ ++++a+r+rv+++++ +  + +l
       KIR61131.1 311 PSRWNEnQPMAVLEAYGCGVPVVASDLGGLPELVTAGVDGEVVPadDPVALAAGLARVLADPQRAYRMGRAGRARVERDFSPQAHLTRL 399
                      66665525589**************************977777666**********************************998776665 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.4e-06     0.016      65     107 ..      86     128 ..      69     139 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.4e-06
  Glyco_trans_4_2  65 klkklikkikPDvvhahya....kpygllgslaarlsgvipvvlsvw 107
                       l+++++++ PDvvh+h++    +p +l    aa ++  +p v++ +
       KIR61131.1  86 GLARVLDEFRPDVVHLHNIyhqlSPSVL----AAVRAARVPAVMTLH 128
                      689***************9655434333....333444488888888 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.6e-05      0.19     127     172 ..      89     130 ..      35     149 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.6e-05
  Glyco_transf_5 127 ekl.gwkpdvihahDWhtalvpallkelykerglfkkiktvftiHNl 172
                     + l +++pdv+h+h  +  l p +l+++++     ++++ v+t+H  
      KIR61131.1  89 RVLdEFRPDVVHLHNIYHQLSPSVLAAVRA-----ARVPAVMTLHDY 130
                     2233569*********************74.....46********64 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2547.90
//
Query:       KIR61132.1  [L=303]
Description: hypothetical protein TK50_25565 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-22   81.2   0.1    7.4e-22   78.8   0.1    2.1  1  Sulfotransfer_3  Sulfotransferase family
    4.6e-10   39.4   0.0      1e-08   35.0   0.0    2.2  1  Sulfotransfer_1  Sulfotransferase domain
  ------ inclusion threshold ------
       0.17   12.2   0.0       0.28   11.5   0.0    1.3  1  TrkA_N           TrkA-N domain


Domain annotation for each model (and alignments):
>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.1   1.2e-25   7.4e-22       3     216 ..       4     256 ..       3     257 .. 0.71

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 1.2e-25
                      EEE--TTSSHHHHHHHHHT.............................STTEE--S--..--TT.-SBHHHHHHHHTT-S...TTTHHHHHHHH CS
  Sulfotransfer_3   3 fivGlpRSGTTlLhrlLaa.............................hpdvripeetl.fvaprllalleawskdgrelrrlldagltqeeae 66 
                      ++vG+ R G+Tl+++lL+                               +++r+++ t  +   rll++ +  +    e ++lld ++      
       KIR61132.1   4 VVVGTGRCGSTLVQELLSRhpgvgfvsgvddklsrlnltgrlngplyrRSAPRPAGMTSlRHSRRLLEKGR-LRVAPSEAYHLLDRHVLAG--- 93 
                      69*****************6666666666666666666666666665533344444442033333333333.4555556666666644433... PP

                      HHT--HHHHHHHHHHHHHTT-BHHHHHHHHHHHTTTSEEEEEESSGGG-HHHHHHHBSSEEEEEEE--H.HHHHHHHHHTT--------..... CS
  Sulfotransfer_3  67 lphledaeepeedlqllraalasvilealarvpsyarwlvdKsPshlfrldlllelfPdAkfihlvRdpvdtvlssyvslfgkkresys..... 155
                      + ++ +  ++e+    lr+ l++ +++a + ++++ r l+    + + r ++l + +P+ +++ +vRd+ ++v +s++++ g+    ++     
       KIR61132.1  94 FSRPCRDLTAEDLTPYLRRRLRA-FFDA-RIARQGCRLLL-HHVTGWPRTGFLRAGYPELRVVNVVRDG-RAVTNSWLQM-GW-WDGWRgpdnw 181
                      44788888888888888888886.6777.66667777666.5667788*********************.9********9.33.5677788888 PP

                      .............--..-HHHHHHHH.........HHHHHHHHHHHHHHS-TTSEEEEEHHHHHH-HHHHHHHHHHHHT---- CS
  Sulfotransfer_3 156 .............edsldeledalee.........warayerllaararlppdrfldvrYedLvadpegtlrriyeflglpwd 216
                                   e    e++    +         w+  ++++ +ara +p++++ldvrYedL adp+g++ r+++fl+l+w+
       KIR61132.1 182 flgplptdlrrewE----EYD----RsfpvlaalgWKMLMDSFAEARAAHPEAQWLDVRYEDLLADPRGEVARMLDFLDLDWS 256
                      88888655543332....222....112223334488888999999999*********************************8 PP

>> Sulfotransfer_1  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   1.7e-12     1e-08       5     197 ..       4     254 ..       3     262 .. 0.70

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.7e-12
                      EEEESTTSSHHHHHHHHHH........................................HHTTTCCHHHTSSGHCT-HHHSCBTTHECCTSGCC CS
  Sulfotransfer_1   5 livtypKSGTtwlqellsl........................................itsegdfekaeepalfnardrspfLelydlyfpns 58 
                      ++v++ ++G+t +qells                                         +                 r+  + Le+ +l++ +s
       KIR61132.1   4 VVVGTGRCGSTLVQELLSRhpgvgfvsgvddklsrlnltgrlngplyrrsaprpagmtsL-----------------RHSRRLLEKGRLRVAPS 80 
                      6899***************89999999999988888888877777444444444444330.................44444555444444433 PP

                      GTTE...CCC........................HHHTTTEEHHHHHHHSTSS.EEE...E...GGGS.CHHHHTT-EEEEEE--HHHHHHHHH CS
  Sulfotransfer_1  59 lkpp...dhl........................rsyshvaekvvrlralesprllk...tHlplkllpkslldsnlKiiylvRnpkdvavSry 122
                        +    +h+                        r +++  +  +  r l          t  p  ++ ++   + l+++ +vR+ ++v  S++
       KIR61132.1  81 EAYHlldRHVlagfsrpcrdltaedltpylrrrlRAFFDARIARQGCRLL------LhhvTGWPRTGFLRA-GYPELRVVNVVRDGRAVTNSWL 167
                      33332333336666666666666666665554446666555555555555......301233444454444.3799****************** PP

                      HHHHHBT..........TSTTT-S.-HHHHHHHHHT.THSTTC-HHHHHHHHHHHTTTTTEEEEEHHHHHHHHHHHHHHHHHHTT-- CS
  Sulfotransfer_1 123 hfsrslk..........klkepet.pfeeffdlfle.grvvcgsyfdhvkswlklrkkgnvlflrYEdlkkdpakeikkiaeFlGip 197
                      +  +  +          +l+ +    +ee+  +f     + +   +d++ +   + ++ + l +rYEdl +dp++e+ ++++Fl+++
       KIR61132.1 168 QMGWWDGwrgpdnwflgPLPTDLRrEWEEYDRSFPVlAALGWKMLMDSFAEARAAHPEAQWLDVRYEDLLADPRGEVARMLDFLDLD 254
                      **9888899******995555555579988777754267778899999999999******************************997 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.6e-05      0.28       2      33 ..       4      38 ..       3      55 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.6e-05
                EEES-SHHHHHHHHHHHHTT....EEEEEEESSHHH CS
      TrkA_N  2 iiiGlGrvGrslaeeLsegg....kdvvvidkdeer 33
                +++G Gr G++l++eL +++      v+++d++ +r
  KIR61132.1  4 VVVGTGRCGSTLVQELLSRHpgvgF-VSGVDDKLSR 38
                8*****************9966644.6677766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2293.37
//
Query:       KIR61133.1  [L=628]
Description: x-prolyl-dipeptidyl aminopeptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-52  178.4   0.4    3.1e-52  177.8   0.4    1.3  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
    4.9e-34  118.2   0.1    7.6e-34  117.6   0.1    1.2  1  PepX_C         X-Pro dipeptidyl-peptidase C-terminal non-cata
    4.2e-06   26.4   0.7    1.3e-05   24.8   0.7    1.9  1  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.8   0.4   5.2e-56   3.1e-52       1     268 [.      67     340 ..      67     341 .. 0.87

  Alignments for each domain:
  == domain 1  score: 177.8 bits;  conditional E-value: 5.2e-56
                    TS..-EEEEEEEEE...TTSSSEEEEEEEESS-CCT.CCCCHTTCHHCCHGGGHH............HHHTT-EEEEEE-TTSTTS-S---TTTTT CS
  Peptidase_S15   1 DG..vrLavdiyrP.etkskeklPvlltrtPYgkndelasdkalaleelelqdkv............fvarGYavVvqdvrGtggSeGeftvgdsd 81 
                    DG  + +a d++rP  t+++ k+Pv++ ++PY+ +   + + +  +++l+ +               fv+rGYav++ d++Gt++S+G+ t+   +
     KIR61133.1  67 DGlrDIIAFDLMRPaATANGLKVPVIMDASPYYSTV-CRGNESECKADLDGD--GlldrwplfydnyFVPRGYAVILLDMVGTNNSTGCPTTNANQ 159
                    66657799*************************444.333333344443322..2456778*********************************** PP

                    HHHHHHHHHHHHHH.............CTTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEEECE-S-TCCCCSECTTEEBCCHHHHHHHHHCCC CS
  Peptidase_S15  82 eaedgadvidWlak.............qpwsnGkVgmtGiSYlGttqllaaatgvpalkaivpeaaisdlyddyyregGlvrapgglswedldlla 164
                    +  +++++i Wl++              +w nGk gm+G+SY+G ++++ a+tgv++l ++vp+++ +  yd y+r++G+v+  + +      +la
     KIR61133.1 160 DNLSAKQAINWLNGratarnaagqvvtADWHNGKSGMIGKSYDGSLAMATAVTGVKGLTTVVPISGPTEYYD-YVRSNGVVTRGNSYVA----SLA 250
                    **************************55********************************************.**********997666....666 PP

                    CHHTSSS-STTHHHHHHHHHHCHCCCCCCTTHHHTHHHHCCCC--SSSHHHHTT-HHHHHCT--S-EEEEEECCSSTTC.CHHHHHHHHHCCTT-. CS
  Peptidase_S15 165 ealtsrradegdalkaaaryeaasdellaeldrqtpveselletgdydafWkdrnlsedadkvkapvllvgGwnDwnvk.ngaiklyealkapgv. 258
                    +++t++++++         ++ ++d ++a+  ++         +gdy+afW++r++ +++ +++a+vll++G+nD+nv+ ++++k++ al ++++ 
     KIR61133.1 251 NTVTNPERRDY--------CKPVRDAMAAADGDE---------HGDYTAFWNERSYVKKVPNMTASVLLYHGLNDDNVRpDHFSKFWYALAENNIp 329
                    66666666644........445555555554444.........9**************************************************9* PP

                    .EEEEECECTT CS
  Peptidase_S15 259 .klilgpwtHv 268
                     kl+l +  Hv
     KIR61133.1 330 rKLWLSQEGHV 340
                    **********8 PP

>> PepX_C  X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.1   1.3e-37   7.6e-34       1     197 [.     367     597 ..     367     623 .. 0.86

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 1.3e-37
      PepX_C   1 ngvertppvrlqvldggsgstwrtedawpspntkattlylsqrgagstgdgtlsaasplsdeaaaseedlydptnpldqdqreeradslafttaplaed 99 
                 ng++++p+v+l++  +     w+t ++wp p++  t+++l+    g+tg g+l++ ++++    a++   +++ n +  ++++ ++++laf +apl+ +
  KIR61133.1 367 NGIMDEPRVDLERAADV----WETHADWPIPGKADTEVFLQ---PGTTGAGGLKLVPTAKPATGAFQDSRTQSQNTMILNPDTVQPNRLAFLSAPLTAP 458
                 899***********999....********************...77888888877777777777777777777566777779***************** PP

      PepX_C 100 telvGapkakLrvssdapdadlsvtLvdvdpd..............................Gea............tlitkGwlrlsnRasdeepepl 156
                 ++++G+p + Lr+s+d+ d+++ + Lvd+++d                                             +l+tkG+++++nR+s +++ pl
  KIR61133.1 459 LHISGTPTVQLRASADQTDTNFGAILVDYGTDervahrasgegiitlttedcwglnsptddgC-YkqtakrvatadyELVTKGIMDAQNRQSIRTAVPL 556
                 ********************************9999988877777776666666665555550.0555566666788********************** PP

      PepX_C 157 ePGevydleieLqptayrfpkGhrlrlsvsssdfpmilpnp 197
                   Ge y++++ L p +y+f++Ghr+++++ +s+ +++    
  KIR61133.1 557 VVGESYNFTFPLLPEDYVFKPGHRIGVIIVASYPQYSSQAD 597
                 **********************************9987655 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.7   2.1e-09   1.3e-05     125     209 ..     281     362 ..     128     364 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2.1e-09
                   HHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHHHHHHHHHHHHHHHC CS
  Peptidase_S9 125 eegykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakveelarllaFlkeal 209
                    +  +e+s ++++ n   ++++Ll hGl+Dd+v p +  k+  aL +++ +   l+  +egH+   +++++ ++ +l ++++ +l
    KIR61133.1 281 TAFWNERSYVKKVPN--MTASVLLYHGLNDDNVRPDHFSKFWYALAENNIPR-KLWLSQEGHVDPFDSRRAVWVSTLHRWFDFWL 362
                   333344455555556..999**************************987774.457899***999999999**********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4409.35
//
Query:       KIR61134.1  [L=529]
Description: glucan endo-1,3-beta-D-glucosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-98  330.9   0.0    1.7e-98  330.3   0.0    1.2  1  Glyco_hydro_64   Beta-1,3-glucanase
    4.5e-23   81.9   6.9    9.2e-23   80.9   6.9    1.5  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    4.9e-17   62.4  13.4    1.4e-08   35.3   1.2    4.2  4  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like


Domain annotation for each model (and alignments):
>> Glyco_hydro_64  Beta-1,3-glucanase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.3   0.0  2.9e-102   1.7e-98       3     367 ..      35     389 ..      33     391 .. 0.93

  Alignments for each domain:
  == domain 1  score: 330.3 bits;  conditional E-value: 2.9e-102
                     EEEEEEEESTTGG.EEEEEEEE-TTT--.EEEE-TTS-EEE--GGGGTSTT-EEEE.EB-ETTT-.....SEEEE-SE.EEEEEEEEESS---BE CS
  Glyco_hydro_64   3 lpltlvnntgsdd.vyayvtGldlatngalvlldadGtllyvpaspntaskkltpleediaiplgapgstktvtiPkqiasgRiyfsvgkkLkfl 96 
                     lp+t++n+tg++d vy+yv+G +l+t+ +l ++++ G++++++  +     ++   + d++ip + +g ++t++ P + +sgR+yf++g+kLkf+
      KIR61134.1  35 LPVTVTNTTGRSDaVYLYVIGVQLSTG-RLGYVTSGGAFAPWTGGQ-----IPPSPAPDVSIPGPGNGGSTTIQFP-RGFSGRVYFALGQKLKFF 122
                     89*********555**********876.5************99866.....33223689*****************.77**************** PP

                     EEE-TT-.EEE---TTSTT-TTTT--EEEEEEEE.TTEEEEE---SSEE-S-EEEEEEESSS...-EEEEE-S-HHHHHHHHHHHS...-HHHHT CS
  Glyco_hydro_64  97 lneasgppalvePsvtnpsDpnanvnfdfaEftynsaglfaNisyVDfvslplgleltgasgatqtvkglkadglakvcaalkaqaakdgaawdk 191
                     l+    p++lv+P+++ + D+n+++ fd+ Eftyn++gl++N s+VD++++p+++++tga+g t+++  + a+g+++v+++++aq      +w++
      KIR61134.1 123 LT----PDGLVQPAPWAAGDANRDILFDWSEFTYNDSGLWLNSSQVDMFAIPHAVTVTGANGVTKRTGDVVANGRNAVIDGIRAQ-----PGWAN 208
                     **....789***************************************************************************8.....58*** PP

                     TB-......SS-EE-TTSTT-TTST.TTTTHHHHHHHHHHTTTS-EEEEETT..EE..EEEEE.ETEEEEEETT.....E-S---HHHHHH---S CS
  Glyco_hydro_64 192 lvvkdsdgkvlrvlsPnkgsalneafagYfdsyvdevwskYatedLtvdtqakaGt..vtGrvsgdaltfgdgg.....sfakPstadifgcnsG 279
                     +v+++sdg+vlrvl+P+k++ ++   ++Y+dsyv+++w++Y+t++Ltv   a++    + Gr+sg+++tf++g+     sf++Ps+a ++gc+ +
      KIR61134.1 209 TVHTRSDGTVLRVLAPGKAAGAGLLSTTYLDSYVASAWNAYTTKTLTVVPFADQPAirYYGRTSGNTMTFTNGSgqvvaSFNRPSSASVWGCDGD 303
                     ********************99988*************************999544569****99*****6666789****************77 PP

                     -HH.....HHHHHHHHHHHHHTT-TT-.....GGGTTGGGTTS..SS-HHHHHHHHTBGGG----STTTTGG.G-S--EEESSEEEEEE CS
  Glyco_hydro_64 280 pfa.tdsaekavqarLaAAfnRstllltadaqpskeeastyYkkeptNhYarlvHensvdgkgYaFaYDDvnpdqsglvsdgnpksltv 367
                       a +d++   + ++L+AA+nR+tl  t d+qp+++ a+++Y+++ptN+Yarl+H+n++dg++YaFa+DDv   +++lv+dg+p+s+ +
      KIR61134.1 304 LPApNDQVVGPISRTLCAALNRGTLG-TIDTQPTTN-AADFYRNNPTNQYARLIHANMTDGRAYAFAFDDVG-GFESLVHDGDPRSAGL 389
                     777456689*****************.89*****99.*****6569**************************.***********99765 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   6.9   1.5e-26   9.2e-23       7     127 .]     409     526 ..     404     526 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 1.5e-26
                     ETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEETTSEEEETT.TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTTEEEETTTS CS
  Ricin_B_lectin   7 nvasgkCLdvegeska.gapvglydChgskgkQlwtltkdgeirskaqselCldvs..staegakvvlakChkgkgnqrWefdkdgtqirhkksg 98 
                     ++ ++kC+dv++++    ap+++++C+++++ Q+w ++++  ++s  q+++C+d+   sta+ga v+l++C+ g+g+q+++++  g+ +++ + +
      KIR61134.1 409 STWNNKCIDVPSSNFVdRAPLQMWNCNNTNA-QKWLFSGT-ALKS--QNNKCMDIDagSTANGAVVQLYTCN-GTGAQEFTLNAAGD-LVNLQAN 497
                     55689********9999************88.***99985.5555..49******999*************9.**************.******* PP

                     EEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  99 kCLdvkgasksne.klilkkcdsgsdsQkW 127
                     kC+d+k+a++s++ +l+l++c  g+++QkW
      KIR61134.1 498 KCVDIKDANGSDGaRLQLWDC-AGTANQKW 526
                     *******************99.******** PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.55   3.3e+03      38      65 ..     253     279 ..     207     296 .. 0.52
   2 !   35.3   1.2   2.4e-12   1.4e-08      17      89 .]     407     473 ..     394     473 .. 0.88
   3 !   25.0   0.2   3.8e-09   2.3e-05      22      59 ..     453     490 ..     447     495 .. 0.89
   4 !   25.6   0.9   2.6e-09   1.6e-05      17      53 ..     491     527 ..     488     529 .] 0.95

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.55
                      EEEEE-TTT-GGCEEEEECCESSEEEEE CS
  RicinB_lectin_2  38 nvqqwtcsgaanqqWrledtgdgtyriv 65 
                      ++   +++++++ +++ ++ g +t +++
       KIR61134.1 253 TLTVVPFADQPAIRYYGRTSG-NTMTFT 279
                      222223334444444443333.455554 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 2.4e-12
                      EECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  17 iknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      +++  ++k++dv++++ ++ a +q w+c+++++q+W +     +   ++++++  ++d++ gstanG+ vq++
       KIR61134.1 407 VVSTWNNKCIDVPSSNFVDRAPLQMWNCNNTNAQKWLF-----SGTALKSQNNK-CMDIDAGSTANGAVVQLY 473
                      5666789******************************9.....46779997775.*****9999*******97 PP

  == domain 3  score: 25.0 bits;  conditional E-value: 3.8e-09
                      SSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCES CS
  RicinB_lectin_2  22 sgkvLdvaggstanganvqqwtcsgaanqqWrledtgd 59 
                      ++k++d+++gstanga vq +tc+g+ +q+++l+ +gd
       KIR61134.1 453 NNKCMDIDAGSTANGAVVQLYTCNGTGAQEFTLNAAGD 490
                      69*******************************88873 PP

  == domain 4  score: 25.6 bits;  conditional E-value: 2.6e-09
                      EECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEE CS
  RicinB_lectin_2  17 iknvasgkvLdvaggstanganvqqwtcsgaanqqWr 53 
                      ++n + +k++d+++++ ++ga++q w+c+g+anq+Wr
       KIR61134.1 491 LVNLQANKCVDIKDANGSDGARLQLWDCAGTANQKWR 527
                      78999*******************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 3460.98
//
Query:       KIR61135.1  [L=410]
Description: alcohol dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-106  355.9   4.2   2.3e-106  355.7   4.2    1.0  1  Fe-ADH    Iron-containing alcohol dehydrogenase
    6.1e-15   55.6   4.7    2.9e-08   33.7   0.7    2.1  2  Fe-ADH_2  Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  355.7   4.2  2.5e-110  2.3e-106       1     361 [.       8     386 ..       8     389 .. 0.96

  Alignments for each domain:
  == domain 1  score: 355.7 bits;  conditional E-value: 2.5e-110
                 -SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHH CS
      Fe-ADH   1 PtrivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKa 99 
                 P++++ g+g+++++++ +++ g +r+livtd+ +l  ++ +++++++++e+  +v+vf++ +p+ +l++v+ a+++a e +adv++a+GGG+viD+AK+
  KIR61135.1   8 PRQLIVGEGVAQNIPRVVAESG-SRVLIVTDRILL-GQPGVAEIVAAVREKVEAVAVFSDATPDVPLTDVDLAVSAAAEVDADVILAIGGGTVIDLAKI 104
                 8899******************.8**********9.66688889999977777777******************************************* PP

                 HHHHTT...................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHHH CS
      Fe-ADH 100 ialllanpe.vedylgegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEayv 197
                 + ++ ++++ ++d++ge k+ + ++ pl+a+PTt+GtGse tp++v+td+++  k+++++ +++Pd+aivDpelt+t+P+ vta +g+Da++ha+E+y+
  KIR61135.1 105 VGVIRRHGGtPRDFYGESKV-PGPTFPLVAVPTTSGTGSELTPVSVLTDPDRALKVGVSSVHIVPDFAIVDPELTYTCPATVTAHSGIDAFCHAVESYT 202
                 *******956*****88877.9999************************************************************************** PP

                 HH...............T---TTSSB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHH CS
      Fe-ADH 198 sk...............kanplsdalaleairliaknleravadgedleareqmllastlaglafsnaglgavHalahalgalfgiphglanaillpav 281
                 ++               ++np++d +al+a++ ia++l+rav+dg+d +ar++m ++s+laglafs+ag +a Hal++++ga  ++phgl++++llp++
  KIR61135.1 203 ARprahaprdpveqvflGRNPVTDHYALRAAERIARSLRRAVRDGGDTDARADMSYGSMLAGLAFSHAGNAAPHALQYPIGAATHTPHGLGVGLLLPYA 301
                 *66*******************************************************************************99*************** PP

                 H..........HHHHHHT...........T--HHHHHHHHHHHHHTT---SHHHHT-TT-HHHHHHHHHT-T.SGGGGSSS---H CS
      Fe-ADH 282 lrfnaeaaperlaqlaralgge....sdeeaaeeliealrellkelglptsLselgvdeedldklaeaalkd.rslannprelta 361
                 l+  ++a  +rla la a+g +    sd+eaa++++++l  ll+++g+p +L+++gv ++dl+++ae a    r ++n p +++ 
  KIR61135.1 302 LDAARDAIVDRLAVLAGACGLDvadaSDAEAADAFLTWLGGLLADIGIPATLADIGVARADLPRFAEMAGGVtRLIQNHPGPTDT 386
                 *99999999************9***********************************************9889999999988776 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.7   3.2e-12   2.9e-08       2      95 ..      13     106 ..      12     111 .. 0.88
   2 !   23.7   0.2   3.6e-09   3.2e-05     101     250 .]     130     295 ..     127     295 .. 0.79

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 3.2e-12
    Fe-ADH_2   2 igegaleklgellkelelkkvllvaden.tkkaagekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvs 95 
                 +geg+ ++++ +++e  +++vl+v+d+    +    ++  +++e+   v+v+++++++  l++v   v+a++e ++d+++a+GgGt+iD+ak+v 
  KIR61135.1  13 VGEGVAQNIPRVVAES-GSRVLIVTDRIlLGQPGVAEIVAAVREKVEAVAVFSDATPDVPLTDVDLAVSAAAEVDADVILAIGGGTVIDLAKIVG 106
                 789999****999986.689*******945666778888888888778899**9***************************************97 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 3.6e-09
    Fe-ADH_2 101 pyvsvpTaaSvDGfaspgaslvvd..gkkrtv.akaaaPlaviaDldvlaeAPrrlla.sGvGDllgkytaladwklan..............evsepl 181
                 p+v+vpT+    +   p++ l+      k+ v     +P   i+D ++  ++P+  +a sG+      + + +    a+               v++++
  KIR61135.1 130 PLVAVPTTSGTGSELTPVSVLTDPdrALKVGVsSVHIVPDFAIVDPELTYTCPATVTAhSGIDAFCHAVESYTARPRAHaprdpveqvflgrnPVTDHY 228
                 7788888766666666666666544556776655566888889***********99864887544444444444445555667777777887899**** PP

    Fe-ADH_2 182 aklsaamvqeaaeklvedkketealeellealalsgigisrpaSGsEHliSHaldmlalkqalHGeqVG 250
                 a+ +a+ +  +++++v+d+++t a + +  +++l+g+++s+++  + H +   + ++   ++ HG  VG
  KIR61135.1 229 ALRAAERIARSLRRAVRDGGDTDARADMSYGSMLAGLAFSHAGNAAPHALQYPIGAAT--HTPHGLGVG 295
                 **************************************************99999988..99***9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2802.99
//
Query:       KIR61136.1  [L=486]
Description: succinate-semialdehyde dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.9e-160  533.0   0.0   5.9e-160  532.8   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.021   14.3   0.0      0.035   13.5   0.0    1.2  1  DUF1487   Protein of unknown function (DUF1487)
      0.046   14.0   0.0       0.12   12.6   0.0    1.7  1  DUF3102   Protein of unknown function (DUF3102)
       0.23   11.3   1.1        3.3    7.6   0.0    2.8  3  Moricin   Moricin


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  532.8   0.0  1.3e-163  5.9e-160       1     459 [.      21     478 ..      21     480 .. 0.98

  Alignments for each domain:
  == domain 1  score: 532.8 bits;  conditional E-value: 1.3e-163
                 EET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHH CS
      Aldedh   1 wveses.etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlr 98 
                 w++++s  t++v +Patg++ia+v++a+ +d  aa++aA  a+ +wa++p+++R+e+L +++++l+er ee a+l+tle+Gkplaearaev++ ++++r
  KIR61136.1  21 WRDAASgATFAVEDPATGQTIAEVADAGVADGLAALDAASTAMAQWAATPPRKRSELLTATHRALTERSEEVARLITLEMGKPLAEARAEVAYGAEFFR 119
                 888888677****************************************************************************************** PP

                 HHHHHHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SS.TCC CS
      Aldedh  99 yyaelaeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgs.gse 195
                 ++ae+a ++eg+  +  + g+++l++ +P+G ++ +tPWNfPl++ a+k+apalaaG+t++ KPa +tpl++llla+++ee+g+P+gv+nvvt++   e
  KIR61136.1 120 WFAEEAVRVEGRYSTApAGGYRILTVPKPVGPCVFVTPWNFPLAMGARKIAPALAAGCTTITKPAAQTPLTMLLLARIMEEVGVPPGVVNVVTTKrSGE 218
                 ***********88777679*************************************************************************9885679 PP

                 HHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHH CS
      Aldedh 196 vgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaak 294
                 v +al+++ + +k+sftGstevgr ++++aa+n+ r+++ElGG+++liv++daDld a+++++ + ++n G+ Ciaa+r++v+e + +ef+++++e++ 
  KIR61136.1 219 VVSALLADGRTRKLSFTGSTEVGRVLLRQAADNVLRTSMELGGNAALIVCADADLDVALDGAMVAKMRNIGESCIAANRIYVEEPVREEFTARFAERMG 317
                 *************************************************************************************************** PP

                 T--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSS CS
      Aldedh 295 klkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdt 393
                 +l+vg++ld+ +dvG+li+ a++ +++k+v++a+e+ga++l+Gg   e+ +  g+f+ Ptvl +v++d+r+++eEiFGPV+++i+f +++e++++aNdt
  KIR61136.1 318 ALSVGHGLDDGVDVGALIDDASVTTIDKLVADAVERGARVLVGG---ERPDGPGHFYPPTVLVDVPEDARMLREEIFGPVAPIIPFTSDDEVLAKANDT 413
                 ********************************************...7789************************************************ PP

                 SEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEE CS
      Aldedh 394 eyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytev 459
                 e GL ++vft+dl+ra r+ae l++G+v+iN+   ++++a pfgGvkqSg+G+eg++eg+ ey+ +
  KIR61136.1 414 EHGLVGYVFTRDLQRAIRFAEGLDTGMVGINRGLISDPSA-PFGGVKQSGIGKEGSHEGILEYLDL 478
                 ****************************************.**********************975 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.9e-06     0.035       8      61 ..     265     320 ..     261     324 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.9e-06
     DUF1487   8 mvifedgDlnsale.alveslkePfaegava..tvlveesirdefvervrsklkpls 61 
                 +++++d+Dl+ al+ a+v ++++ ++e  +a   + vee +r+ef  r ++++  ls
  KIR61136.1 265 LIVCADADLDVALDgAMVAKMRN-IGESCIAanRIYVEEPVREEFTARFAERMGALS 320
                 89***********8468888887.66666652369*****************98886 PP

>> DUF3102  Protein of unknown function (DUF3102)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.8e-05      0.12      11      51 ..      83     124 ..      74     140 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.8e-05
     DUF3102  11 ntikeqtkkilLtsaieiGrrLkEakellpyG.ewlkwLees 51 
                 ++++e+++++    ++e+G+ L+Ea++ + yG e+ +w  e+
  KIR61136.1  83 RALTERSEEVARLITLEMGKPLAEARAEVAYGaEFFRWFAEE 124
                 678888999999999****************989****9875 PP

>> Moricin  Moricin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00073       3.3       8      40 ..      41      74 ..      39      75 .. 0.78
   2 ?    1.1   0.0     0.076   3.4e+02       9      19 ..     315     325 ..     313     326 .. 0.86
   3 ?   -2.9   0.0       1.4   6.2e+03       9      21 ..     345     357 ..     344     358 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00073
     Moricin  8 IkkvaKA.VGkGLRAlNIASTAnDvvsalKhKKR 40
                I  va A V  GL Al  ASTA     a  ++KR
  KIR61136.1 41 IAEVADAgVADGLAALDAASTAMAQWAATPPRKR 74
                55666665999***********877777777776 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.076
     Moricin   9 kkvaKAVGkGL 19 
                 + +a  VG+GL
  KIR61136.1 315 RMGALSVGHGL 325
                 789999****9 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.4
     Moricin   9 kkvaKAVGkGLRA 21 
                 k va AV +G R 
  KIR61136.1 345 KLVADAVERGARV 357
                 5689999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3430.42
//
Query:       KIR61137.1  [L=358]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-28   97.4   0.0    1.5e-27   96.8   0.0    1.3  1  ABC_tran         ABC transporter
    2.9e-06   27.4   0.4    9.7e-06   25.7   0.3    2.0  2  TOBE_2           TOBE domain
    7.7e-06   25.9   0.8      0.012   15.5   0.1    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    2.2e-05   25.2   0.0    0.00017   22.4   0.0    2.4  2  OB_MalK          MalK OB fold domain
     0.0025   18.3   0.0     0.0037   17.8   0.0    1.2  1  AAA_23           AAA domain
      0.003   17.8   0.1     0.0065   16.7   0.1    1.6  1  AAA_22           AAA domain
     0.0067   16.2   0.0      0.013   15.2   0.0    1.5  1  AAA_30           AAA domain
  ------ inclusion threshold ------
      0.011   16.2   0.5      0.024   15.0   0.5    1.8  1  AAA_16           AAA ATPase domain
      0.016   14.8   0.0      0.028   14.0   0.0    1.3  1  AAA_27           AAA domain
      0.017   14.9   0.1      0.041   13.6   0.1    1.6  1  AAA_29           P-loop containing region of AAA domain
      0.024   14.9   0.2      0.076   13.3   0.2    1.9  1  TOBE             TOBE domain
      0.026   14.4   0.0      0.059   13.3   0.0    1.5  1  RsgA_GTPase      RsgA GTPase
       0.06   13.6   0.2       0.19   11.9   0.0    1.8  2  AAA_28           AAA domain
      0.069   13.6   0.0       0.13   12.7   0.0    1.4  1  AAA              ATPase family associated with various cellul
      0.079   13.1   0.3        0.2   11.8   0.3    1.8  1  AAA_33           AAA domain
      0.085   13.4   0.3       0.84   10.3   0.0    2.7  2  CysA_C_terminal  CysA C-terminal regulatory domain
      0.098   12.1   0.0        1.5    8.2   0.0    2.1  1  SMC_N            RecF/RecN/SMC N terminal domain
       0.23   11.4   0.0       0.39   10.6   0.0    1.3  1  Rad17            Rad17 P-loop domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   1.5e-30   1.5e-27       1     136 [.      19     161 ..      19     162 .. 0.93

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 1.5e-30
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.........esdeeiekals 90 
                 l+ v+l++  g+  +++G++GaGK+t l+++agl k ++G+++ldg+d +      + + +++++q+  l p+ t++en          s+ ei++a++
  KIR61137.1  19 LDGVTLDVPDGSFFVVLGPSGAGKTTTLRAIAGLDKLDAGSVHLDGRDATG--DAPAARDLAMVFQNYALYPRRTAYENiasplrarrCSSTEIAAAVE 115
                 789***********************************************9..7788899***********************9999877777888888 PP

                 HSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  91 klglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +++     ++ ++++p++LSgG+ qrvalaral++ p+ +l+DEp 
  KIR61137.1 116 RMSSLLHIERLLQRRPAQLSGGEMQRVALARALVRSPRAFLMDEPL 161
                 8887777888888888*****************************6 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.6   6.6e+03      36      53 ..      23      40 ..      22      47 .. 0.74
   2 !   25.7   0.3   9.7e-09   9.7e-06       1      76 []     275     345 ..     275     345 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.6
      TOBE_2 36 vvelaggqlvvvrqpnad 53
                ++++++g+++vv  p+++
  KIR61137.1 23 TLDVPDGSFFVVLGPSGA 40
                689999999888776665 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 9.7e-09
      TOBE_2   1 laiRPEklrlaaagganglsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswdpddavvl 76 
                 l++R E+l++ ++ g+ +lsG+   +e lG+ t++ v ++ + l +v+  ++    + +pG+++++++d d+a+++
  KIR61137.1 275 LGLRAEDLSI-EQRGDASLSGELYGLEPLGDRTVVDVLVGTEVL-KVKARPTV---TGTPGERLQVTVDLDRAHLF 345
                 79********.344455*****************9999988877.88888888...899***************98 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.2e-05     0.012       1      24 [.      31      54 ..      31      77 .. 0.78
   2 !    9.2   0.1   0.00098      0.98     220     298 ..     117     193 ..      80     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.2e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllar 24
                + v+ Gp g+GK++ L+a+ +l  
  KIR61137.1 31 FFVVLGPSGAGKTTTLRAIAGLDK 54
                689****************99943 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00098
      AAA_21 220 gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHS 298
                  + +l+ ++  ++ +++lS G  +  al+ al r +   + +l DEp ++L+ kl  +  + l +++++ ga ++ +T +
  KIR61137.1 117 MSSLLHIERLLQRRPAQLSGGEMQRVALARALVRSP---RAFLMDEPLTNLDLKLRVEMRTELtRIHRSLGATFVYVTND 193
                 55677888888899999999987777********99...89**************9999966636555588888888865 PP

>> OB_MalK  MalK OB fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       3.1   3.1e+03      21      43 ..      19      43 ..       5      46 .. 0.70
   2 !   22.4   0.0   1.7e-07   0.00017       1      53 []     235     282 ..     235     282 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3.1
     OB_MalK 21 gggvtlplpeeq..klalklyagke 43
                 +gvtl++p++   ++   + agk+
  KIR61137.1 19 LDGVTLDVPDGSffVVLGPSGAGKT 43
                4789999999986544555555555 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 1.7e-07
     OB_MalK   1 GSPaMNflpatveedgvlvegggvtlplpeeqklalklyagkevilGiRPEhi 53 
                 GSP+  +l ++ e+d  l+ +gg tlp p+       +++g+ ++lG+R E++
  KIR61137.1 235 GSPPISLLACRAEGDR-LIGAGGWTLPRPRWT----TAQDGRALLLGLRAEDL 282
                 9************999.**********99999....***************96 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.7e-06    0.0037      11      40 ..      20      50 ..      11      52 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.7e-06
      AAA_23 11 rdqeidF.skgltlItGpNGaGKTTildAik 40
                +++++d  +  ++++ Gp GaGKTT l+Ai 
  KIR61137.1 20 DGVTLDVpDGSFFVVLGPSGAGKTTTLRAIA 50
                667787767789*****************96 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   6.5e-06    0.0065       6      46 ..      30      63 ..      28     198 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.5e-06
      AAA_22  6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvt 46
                ++ vv G+sG+GKTt+lr ++  ++        +++ v+ +
  KIR61137.1 30 SFFVVLGPSGAGKTTTLRAIAGLDKL-------DAGSVHLD 63
                7899***************9987754.......33333333 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.3e-05     0.013      20      49 ..      31      60 ..      24     136 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.3e-05
      AAA_30 20 vavltGpAGtGKttalkalreaweaaggrv 49
                + v+ Gp G+GKtt+l+a++ + + + g+v
  KIR61137.1 31 FFVVLGPSGAGKTTTLRAIAGLDKLDAGSV 60
                67999**************99887665444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.5   2.4e-05     0.024      21      51 ..      28      55 ..      15     228 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.4e-05
      AAA_16 21 sgrpelvllsGesGvGKsslvrellralekd 51
                +g  +  ++ G+sG GK++ +r+++  l k 
  KIR61137.1 28 DG--SFFVVLGPSGAGKTTTLRAIAG-LDKL 55
                33..7899***************993.4443 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.8e-05     0.028      19      48 ..      22      51 ..      10      53 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
      AAA_27 19 ldfsaeeadlhliyGpNEAGKstalrAisd 48
                ++++  + ++ +++Gp  AGK+t+lrAi  
  KIR61137.1 22 VTLDVPDGSFFVVLGPSGAGKTTTLRAIAG 51
                455555889******************976 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   4.1e-05     0.041      12      43 ..      19      50 ..      17      52 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.1e-05
      AAA_29 12 fdghtieidlkg.atlltGpsGsGKSTllDAiq 43
                +dg t+++  +g ++++ GpsG+GK+T l Ai+
  KIR61137.1 19 LDGVTLDVP-DGsFFVVLGPSGAGKTTTLRAIA 50
                567788886.556999***********998886 PP

>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   7.6e-05     0.076       5      63 ..     290     343 ..     287     344 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.6e-05
        TOBE   5 NqlpgtVvvveplgseveVrvdlgggatLtArvtrrsaeeLgLapGeeVfalikaakvh 63 
                 + l g+ + +eplg +++V+v +g +  L ++  +         pGe++ ++++  + h
  KIR61137.1 290 ASLSGELYGLEPLGDRTVVDVLVGTEV-LKVKARPTVTGT----PGERLQVTVDLDRAH 343
                 5789999********************.**9996555555....999999999877666 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.9e-05     0.059      99     131 ..      29      61 ..       9      71 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.9e-05
                  TSEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelelktgevs 131
                  +++ v++G+SG+GK+t + a+++ ++l  g+v 
   KIR61137.1  29 GSFFVVLGPSGAGKTTTLRAIAGLDKLDAGSVH 61 
                  47899*****************99998888775 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00019      0.19       2      20 ..      32      50 ..      31      67 .. 0.88
   2 ?   -1.3   0.0       2.3   2.3e+03     123     157 ..     158     192 ..     119     197 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00019
      AAA_28  2 ivitGgestGKTtlleaLa 20
                +v++G++++GKTt+l+a+a
  KIR61137.1 32 FVVLGPSGAGKTTTLRAIA 50
                699**************98 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.3
      AAA_28 123 ddgeRredleereaiderlrealrelgipviivps 157
                 d      dl+ r ++ + l  + r lg  ++ v  
  KIR61137.1 158 DEPLTNLDLKLRVEMRTELTRIHRSLGATFVYVTN 192
                 44455557777888888888888888888887754 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00013      0.13       2      35 ..      33      68 ..      32      89 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
                EEESSTTSSHHHHHHHHHHH..HTHEEEEEETTTCS CS
         AAA  2 llyGppGtGKTllakavake..lgvefleisgsell 35
                ++ Gp G GKT++ +a+a    l++  + ++g + +
  KIR61137.1 33 VVLGPSGAGKTTTLRAIAGLdkLDAGSVHLDGRDAT 68
                578***************863355666777777666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3    0.0002       0.2       3      98 ..      33     186 ..      31     224 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0002
      AAA_33   3 llvGlpGsGKstlaerl..lkklg..avllssdt..............................................lrrrlfgtdqqskt..... 46 
                 ++ G++G+GK+t ++ +  l kl+   v+l+  +                                              + +r+        +     
  KIR61137.1  33 VVLGPSGAGKTTTLRAIagLDKLDagSVHLDGRDatgdapaardlamvfqnyalyprrtayeniasplrarrcssteiaaAVERM--------Ssllhi 123
                 678************9944455557677777666677777777777777777776666666666665444444444333322222........022333 PP

      AAA_33  47 ......dytrvldrlyqilnelarkalsagrnvildatnls......rrerarflklarrlgvp 98 
                       ++++++    q++ +lar   ++ r+++ d ++++       + r ++ ++ r lg+ 
  KIR61137.1 124 erllqrRPAQLSGGEMQRV-ALARALVRSPRAFLMDEPLTNldlklrVEMRTELTRIHRSLGAT 186
                 3333323444555566665.67777777777777777744433444245556666666666655 PP

>> CysA_C_terminal  CysA C-terminal regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0         2     2e+03      11      23 ..      15      28 ..      13      40 .. 0.78
   2 ?   10.3   0.0   0.00085      0.84       3      43 .]     242     284 ..     240     284 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2
  CysA_C_terminal 11 klri.GglalpvPe 23
                     k++  +g++l+vP+
       KIR61137.1 15 KVQAlDGVTLDVPD 28
                     5555589******3 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00085
  CysA_C_terminal   3 FhGrvedGklri.GglalpvP.elagadgqevvayVRPhDlei 43 
                      +  r+e+ +l   Gg +lp P  + + dg++  +++R +Dl i
       KIR61137.1 242 LACRAEGDRLIGaGGWTLPRPrWTTAQDGRALLLGLRAEDLSI 284
                      556777777665589******66666699***********987 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0015       1.5      24     176 ..      29     169 ..      11     214 .. 0.51

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0015
                 SSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE.SSSSSSCEEEEEEEETTSEEEEEETTEEE-H. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk.lkiekeevsisrrvkrkgeseykingkevtk. 120
                  sf +++Gp G+GK+  l Ai    G     kl + +++ l  + +++++    +++++f+n      ++  e++    r+ r  ++e++   +++++ 
  KIR61137.1  29 GSFFVVLGPSGAGKTTTLRAI---AGL---DKLDAGSVH-LDGRDATGDAPAARDLAMVFQNYALYpRRTAYENIASPLRARRCSSTEIAAAVERMSSl 120
                 568889999999999999999...342...233333322.11122344444444455555555544222223333333333333333333322222222 PP

                 HHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 121 kevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknv 176
                   +++ll+     + +LSgGe + vala    + + +p+  +l+De   +LD k +
  KIR61137.1 121 LHIERLLQ---RRPAQLSGGEMQRVALARA--LVR-SPR-AFLMDEPLTNLDLKLR 169
                 33333333...3456777777665555432..222.233.3566776666666554 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00039      0.39      21      66 ..       4      50 ..       2      56 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
       Rad17 21 lavh..kkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLs 66
                +avh  +k   +v ++l+  +L+       ++ GPsG gk+t+++ ++
  KIR61137.1  4 VAVHglRKSFGKV-QALDGVTLDVPDGSFFVVLGPSGAGKTTTLRAIA 50
                5666322233333.6889999999988999**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2514.92
//
Query:       KIR61138.1  [L=355]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-28   99.7   0.0    2.8e-28   99.2   0.0    1.2  1  ABC_tran         ABC transporter
    1.1e-11   44.8   1.0    4.5e-11   42.7   1.0    2.1  1  TOBE_2           TOBE domain
      2e-07   31.2   0.0      0.011   15.6   0.0    2.2  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      8e-07   29.8   0.2    3.1e-06   27.9   0.2    2.1  1  OB_MalK          MalK OB fold domain
    8.6e-06   26.2   0.3    8.6e-06   26.2   0.3    2.8  3  CysA_C_terminal  CysA C-terminal regulatory domain
     0.0022   17.9   0.0     0.0038   17.1   0.0    1.3  1  RsgA_GTPase      RsgA GTPase
     0.0043   17.6   0.0     0.0068   16.9   0.0    1.2  1  AAA_23           AAA domain
     0.0046   17.3   0.4       0.01   16.2   0.4    1.7  1  AAA_16           AAA ATPase domain
     0.0071   16.6   0.0      0.017   15.4   0.0    1.7  2  AAA_28           AAA domain
  ------ inclusion threshold ------
      0.012   15.8   0.2      0.047   13.8   0.2    1.9  1  AAA_33           AAA domain
      0.015   14.8   0.0       0.29   10.5   0.0    2.0  1  SMC_N            RecF/RecN/SMC N terminal domain
      0.015   15.7   0.0      0.025   15.0   0.0    1.3  1  AAA              ATPase family associated with various cellul
       0.02   14.8   0.0       0.03   14.2   0.0    1.2  1  Rad17            Rad17 P-loop domain
      0.029   14.1   0.0      0.049   13.3   0.0    1.3  1  AAA_30           AAA domain
      0.093   12.7   0.6       0.99    9.4   0.1    2.2  2  AAA_5            AAA domain (dynein-related subfamily)
       0.13   12.5   0.0        0.3   11.4   0.0    1.6  2  AAA_22           AAA domain
        0.2   11.6   0.0       0.41   10.5   0.0    1.6  1  NACHT            NACHT domain
       0.21   11.2   0.0       0.37   10.4   0.0    1.3  1  AAA_27           AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   2.8e-31   2.8e-28       2     136 ..      21     162 ..      20     163 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 2.8e-31
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 ++v+l++  ge+ +++G++G+GK+t l+++agl+++t G+i++ ++ +++  l+ +++ i++++q   l p+l+ r+n             e ++++++
  KIR61138.1  21 EHVDLSIGDGELFVMLGPSGCGKTTTLRAIAGLERQTTGDIRIGDTLVND--LPPAERDIAMVFQFYALYPHLRTRDNlafplraeglpkpEVQARVAE 117
                 6799*************************************999888888..*************************************9999999*** PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 a++ ++l  l d++     ++LSgG++qrvalaral+++p+ +l+DEp 
  KIR61138.1 118 AARLMRLGPLLDRRP----RQLSGGEQQRVALARALVRRPRAFLMDEPL 162
                 *********999998....*****************************6 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   1.0   4.5e-14   4.5e-11       2      67 ..     275     337 ..     274     341 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 4.5e-14
      TOBE_2   2 aiRPEklrlaaagganglsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVels 67 
                 ++RPE+l++ a+g++ +++++V++ e+lG+++ yvv+ +g+++v+vr+p++    ++a++  V+l+
  KIR61138.1 275 GVRPEALEVTAPGAERSIPARVVSAEWLGDEIIYVVDHGGQRDVRVRMPPTV---RFAADAPVGLR 337
                 89*******5555445***********************************9...99999999886 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.1e-05     0.011       2      44 ..      33      63 ..      32     104 .. 0.75
   2 !   13.5   0.0   4.7e-05     0.046     233     300 ..     131     196 ..     125     200 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.1e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirk 44
                 v+ Gp g+GK++ L+a+ +l            e++ +g+ir+
  KIR61138.1 33 FVMLGPSGCGKTTTLRAIAGL------------ERQTTGDIRI 63
                7999**************999............3344444433 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 4.7e-05
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSpl 300
                  +r+lS G ++  al+ al r++   + +l DEp ++L+ +l +   + +k l+   ga  + +TH+ +
  KIR61138.1 131 RPRQLSGGEQQRVALARALVRRP---RAFLMDEPLTNLDAELRADMRTEIKHLQGeLGATMVYVTHDQV 196
                 6799*****9999**********...89***************************999999*****965 PP

>> OB_MalK  MalK OB fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.2   3.1e-09   3.1e-06       1      53 []     236     281 ..     236     281 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 3.1e-09
     OB_MalK   1 GSPaMNflpatveedgvlvegggvtlplpeeqklalklyagkevilGiRPEhi 53 
                 GSP+ N+++++v ++  l  +gg  l+l++      +l + ++++ G+RPE++
  KIR61138.1 236 GSPPINLIEVEVADGS-LRGQGG--LALTPPS----GLPRDRRLVAGVRPEAL 281
                 9************666.666666..5555555....67*************86 PP

>> CysA_C_terminal  CysA C-terminal regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         4   3.9e+03      10      22 ..      59      72 ..      57      81 .. 0.72
   2 !   26.2   0.3   8.6e-09   8.6e-06       1      43 []     241     283 ..     241     283 .. 0.93
   3 ?   -2.5   0.2       8.1     8e+03      20      41 ..     331     353 ..     325     354 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 4
  CysA_C_terminal 10 GklriGglalp.vP 22
                     G +riG++ +  +P
       KIR61138.1 59 GDIRIGDTLVNdLP 72
                     7799**97666577 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 8.6e-09
  CysA_C_terminal   1 NlFhGrvedGklri.GglalpvPelagadgqevvayVRPhDlei 43 
                      Nl++  v dG lr  Gglal  P  +  ++++ va+VRP+ le+
       KIR61138.1 241 NLIEVEVADGSLRGqGGLALTPP-SGLPRDRRLVAGVRPEALEV 283
                      9*************999******.555599************97 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 8.1
  CysA_C_terminal  20 pvP.elagadgqevvayVRPhDl 41 
                      ++P  l ++ g ++v+ VR ++l
       KIR61138.1 331 DAPvGLRHTGGTPAVYDVRTEEL 353
                      45565666677899988887765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.8e-06    0.0038      92     131 ..      22      62 ..       2      66 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.8e-06
                  HHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  92 elkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  ++   + d ++ v++G+SG GK+t + a+++ +++ tg+++
   KIR61138.1  22 HVDLSIGDgELFVMLGPSGCGKTTTLRAIAGLERQTTGDIR 62 
                  455555555999*******************99*****997 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.9e-06    0.0068      14      40 ..      22      51 ..      18      53 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.9e-06
      AAA_23 14 eidF...skgltlItGpNGaGKTTildAik 40
                ++d+   +  l++  Gp G+GKTT l+Ai 
  KIR61138.1 22 HVDLsigDGELFVMLGPSGCGKTTTLRAIA 51
                4666665668******************96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.4     1e-05      0.01      19      51 ..      25      56 ..      19     208 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1e-05
      AAA_16 19 vrsgrpelvllsGesGvGKsslvrellralekd 51
                ++ g++el +  G+sG+GK++ +r+++  le++
  KIR61138.1 25 LSIGDGELFVMLGPSGCGKTTTLRAIA-GLERQ 56
                5678899999****************9.67777 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.7e-05     0.017       2      35 ..      33      68 ..      32     104 .. 0.75
   2 ?   -3.0   0.0       7.8   7.8e+03     129     155 ..     165     191 ..     138     198 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-05
      AAA_28  2 ivitGgestGKTtlleaLaargypvv..pEaareil 35
                +v++G++++GKTt+l+a+a  + ++    +++ +++
  KIR61138.1 33 FVMLGPSGCGKTTTLRAIAGLERQTTgdIRIGDTLV 68
                799****************55444433355555555 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.8
      AAA_28 129 edleereaiderlrealrelgipviiv 155
                  d e r+++ + ++++  elg  ++ v
  KIR61138.1 165 LDAELRADMRTEIKHLQGELGATMVYV 191
                 455666666666666666666666666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   4.8e-05     0.047       1      89 [.      32     174 ..      32     200 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.8e-05
      AAA_33   1 lvllvGlpGsGKstlaerl...lkklg..avllssdt............................................lrrrlfgtdqqskt.... 46 
                 l+++ G++G+GK+t ++ +    ++ +   +++  dt                                            +            +    
  KIR61138.1  32 LFVMLGPSGCGKTTTLRAIaglERQ-TtgDIRIG-DTlvndlppaerdiamvfqfyalyphlrtrdnlafplraeglpkpeV------------Qarva 116
                 689*************998332222.23544443.33244445555555555544444444444444444444444444431............03333 PP

      AAA_33  47 ..............dytrvldrlyqilnelarkalsagrnvildat..nlsrrerarfl 89 
                               ++ +++    q++ +lar   ++ r+++ d +  nl+++ ra+++
  KIR61138.1 117 eaarlmrlgplldrRPRQLSGGEQQRV-ALARALVRRPRAFLMDEPltNLDAELRADMR 174
                 333333333333323333444455555.6666666777777776654455555555555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00029      0.29      70     205 ..      72     199 ..      19     213 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00029
                 TCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  70 ekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeid 168
                   a+ + a v  ++    +     +++ ++   +  +g  + +++ + ++ + +++l +  +  + +LSgGe++ vala    +   +p+  +l+De  
  KIR61138.1  72 PPAERDIAMVFQFYALYPHL----RTRDNLAFPLRAEGLPKPEVQARVAEAARLMRLGPLLDRRPRQLSGGEQQRVALARA--L-VRRPR-AFLMDEPL 162
                 44444444444444444443....2222222333333333334455555555555555555566779******99888754..3.23444.4699**** PP

                 TTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 169 aaLDeknvkkvaellkeksknaQfivislreemleka 205
                  +LD++ ++ + + +k+ + +    ++ ++++++e +
  KIR61138.1 163 TNLDAELRADMRTEIKHLQGELGATMVYVTHDQVEAM 199
                 ******9999999999988876666666666666555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.5e-05     0.025       3      21 ..      35      53 ..      33      86 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.5e-05
                EESSTTSSHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavake 21
                + Gp G+GKT++ +a+a  
  KIR61138.1 35 MLGPSGCGKTTTLRAIAGL 53
                78**************976 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     3e-05      0.03      46      66 ..      31      51 ..       7      59 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3e-05
       Rad17 46 riLLisGPsGCgkstvvkvLs 66
                ++ ++ GPsGCgk+t+++ ++
  KIR61138.1 31 ELFVMLGPSGCGKTTTLRAIA 51
                578899***********9876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.9e-05     0.049      16      47 ..      29      59 ..      19      68 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.9e-05
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaagg 47
                +g  + v+ Gp G GKtt+l+a++ + ++  g
  KIR61138.1 29 DG-ELFVMLGPSGCGKTTTLRAIAGLERQTTG 59
                45.48999***************998887744 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00099      0.99       2      22 ..      33      53 ..      32      59 .. 0.86
   2 ?    1.2   0.0      0.33   3.3e+02      79     109 ..     118     147 ..     114     174 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00099
                EEEE--SSSSHHHHHHHGGGG CS
       AAA_5  2 vlLvGppGtgKselaerlaaa 22
                ++++Gp+G+gK++  + +a +
  KIR61138.1 33 FVMLGPSGCGKTTTLRAIAGL 53
                579***********9999865 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHSSEEE..-SSSEEE---.. CS
       AAA_5  79 sevlnsLlslleerrllleeggelvkakndd 109
                  + l++L +ll++r ++  +gge+++++   
  KIR61138.1 118 AARLMRLGPLLDRRPRQ-LSGGEQQRVALAR 147
                 556889999*******9.6777777777654 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0003       0.3       8      27 ..      33      52 ..      28      99 .. 0.86
   2 ?   -2.9   0.0       7.8   7.8e+03      84      99 ..     147     160 ..     124     196 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0003
      AAA_22  8 lvvtGesGtGKTtllrrlle 27
                 v  G+sG+GKTt+lr ++ 
  KIR61138.1 33 FVMLGPSGCGKTTTLRAIAG 52
                5678************9875 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.8
      AAA_22  84 qalraravielliiDE 99 
                 +al +r +  +++ DE
  KIR61138.1 147 RALVRRPR--AFLMDE 160
                 33333333..444444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00041      0.41       3      22 ..      33      52 ..      31      84 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00041
                EEEEC-TTTCHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklal 22
                 ++ G++G+GKTt l+ +a 
  KIR61138.1 33 FVMLGPSGCGKTTTLRAIAG 52
                6899*************985 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00037      0.37      12      49 ..      16      53 ..      11      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00037
      AAA_27 12 GkftdrsldfsaeeadlhliyGpNEAGKstalrAisdl 49
                G ++ +++d+s ++ +l +++Gp   GK+t+lrAi  l
  KIR61138.1 16 GTVAVEHVDLSIGDGELFVMLGPSGCGKTTTLRAIAGL 53
                56666789999999********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2609.33
//
Query:       KIR61139.1  [L=303]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-19   70.1  14.7      2e-19   70.1  14.7    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.6     0.062   1.1e+03      17      35 ..      33      51 ..      24      57 .. 0.69
   2 !   70.1  14.7   1.1e-23     2e-19       3     180 ..     113     293 ..     111     298 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.062
  BPD_transp_1 17 dkllrpliivllslPsfvl 35
                    +l+++  v++ +P++++
    KIR61139.1 33 EVVLLTVLAVVMLFPVLWM 51
                  5566667777777777765 PP

  == domain 2  score: 70.1 bits;  conditional E-value: 1.1e-23
  BPD_transp_1   3 llGilaa....lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrw 95 
                   +lG+ aa    ++  k  ++ l ++  + ++ P++v+++++++  + + +l ++ l++i++++ +++p+++++++++++++p +++ aa ++G +r 
    KIR61139.1 113 VLGVPAAwaysRFTLKAKKDQLFFILSTRFMPPVVVVIPIFLM--YRQVGLIDSKLGLILIYAAFNVPFTIWMMKGFVDEVPAEYEDAAMLDGYTRL 207
                   6777777755422223333444444444445555556666555..6888999********************************************* PP

  BPD_transp_1  96 qifrkvvlPnalppiitglilafggllggavlleflgswpG.lgtllleailgydyseis..nggvlalviavlllnlvadilqrlld 180
                   q f+k +lP+++p i++++++a++++++++v++ fl+s+    + +   a l+  ++       +++a v++ l+++++a+++ ++l 
    KIR61139.1 208 QAFWKFTLPLLVPGIAATAVFALIFSWNEFVFAIFLTSSDEvRTAPPAIAGLIGGTT--VdwGLVAAASVVFALPVLVFAYLVRKHLV 293
                   *************************************88642223333333333333..36345555556666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2125.24
//
Query:       KIR61140.1  [L=478]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-31  108.1   9.2    1.3e-30  107.4   9.2    1.3  1  SBP_bac_1  Bacterial extracellular solute-binding protein
    2.9e-26   93.0   7.7    4.6e-26   92.3   7.7    1.3  1  SBP_bac_8  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4   9.2   1.5e-34   1.3e-30       9     314 ..      76     384 ..      70     385 .. 0.83

  Alignments for each domain:
  == domain 1  score: 107.4 bits;  conditional E-value: 1.5e-34
                 HHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCEEE. CS
   SBP_bac_1   9 alqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkildskv. 106
                 al+ +++++++ke p+ ++++++v+  ++++++ +++aa + + D+++ d+ +i++ + +g  l+l+++vk++    vk +  +l   +++   +    
  KIR61140.1  76 ALEDFANAEYKKERPNATIKVNTVPNANWHDAMFTQFAAHKTDFDIAILDSQHIGEAVTNGNILDLTDFVKNNI--DVKAYNPYLLAAYGQFPQA--Et 170
                 678889899***************************************************************94..4444444444444444444..03 PP

                 ........ES.EEEEE.EEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCT.HCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT...HHCSH CS
   SBP_bac_1 107 ........ly.vPlya.argliYNkdlfekagldppwtWdelveaakklkekgkkp.iggarggsasgtayyfalalakslggkvfdkdgg...gldnp 191
                         ly +Pl + ++ +iY+kdl  +   +pp tWde + +a +  +++++  +   +++ +s+ a+++++++ + +gg ++d + +   g    
  KIR61140.1 171 gkrdenasLYgLPLLGdTWTMIYRKDLIGD---KPPQTWDEMISVAGRCQADNPGVsGLAFHQANGSDAAAVTYNTVNGIYGGNLWDPKTRkidG---- 262
                 4579***********88************5...5699*******************7778899999999999****************9986663.... PP

                 HHHS.HHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE.EEEEE CS
   SBP_bac_1 192 egvt.aatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi.lgayg 288
                   v  +a+ ++++   +n+ k l+ kg+ n+  +++ a++++G+a +a+++  a    ++ ++     +  e+  ++lg+a lP  k++  ++   + +
  KIR61140.1 263 --VLnDAAGQEAMDVLVNKMKPLTAKGSGNWFIDEVNAAVAQGKACIAFNWIAASGGLLDPKQSTLGTTR-EQILDKLGFATLPSQKTNLVPLgGMGMH 358
                 ..3335555555555555559**************************99888774444444433333333.4445889********************* PP

                 EEEBTTCSTHHHHHHHHHHHTSHHHH CS
   SBP_bac_1 289 laipkgsknpeaAkkFldfllspeaq 314
                 +  ++ ++n+++A  F++++  p+ q
  KIR61140.1 359 VSAYSPAANQAEALNFMKWFERPDIQ 384
                 *******************9998876 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   7.7   5.1e-30   4.6e-26       4     274 ..      83     405 ..      80     412 .. 0.73

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 5.1e-30
                 HHHHHH-.TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGS.TTHHH...-HH.HHHTT...........--TS... CS
   SBP_bac_8   4 kefekkt.gvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdl.dnldd...ltd.alaav...........gydgk.. 83 
                 +e++k+  + +++v t++ +   + + ++ aa ++ d+d+++ ++  +++++ +g + dl+d+ +n  d   +++  laa+           +   +  
  KIR61140.1  83 AEYKKERpNATIKVNTVPNANWHDAMFTQFAAHKT-DFDIAILDSQHIGEAVTNGNILDLTDFvKNNIDvkaYNPyLLAAYgqfpqaetgkrDE--Nas 178
                 6899999999999999988889999*********8.9************************663333332332222444447778766554333..256 PP

                 ----EEEEEEE-EEEEEHHHHHHS.---BHHHHHHH....HHHHHHH-SEGG.---G......GGGGGTHH......ETTEE---H.........HHH. CS
   SBP_bac_8  84 lygvPyasetpyvliynkdllekaedpktwdellaa....akklkgkfglpd.pasg......wlqaalla......kdgksldddg.......gkdgl 158
                 lyg+P+   t +++iy+kdl+ ++ +p+twde+ ++     ++++g  gl+  +a+g      +      +      ++g  +d ++       ++++ 
  KIR61140.1 179 LYGLPLLGDT-WTMIYRKDLIGDK-PPQTWDEMISVagrcQADNPGVSGLAFhQANGsdaaavT------YntvngiYGGNLWDPKTrkidgvlNDAAG 269
                 *******887.8***********9.*********974443347788888853123331122223......23444444555554333445656544444 PP

                 HHHHHHHHH.HHHTT.-EE-S....--SSTTTTTSBSEEEE-TTHHHHHH...........-TT.TSEEEE.--S--...EEEEEEEEEEBTTS-HHHH CS
   SBP_bac_8 159 kealellkk.lkdng.ktydtg..adavsefanGevaftingswdiaaaq...........kag.kklgai.vpkqg...sfaggkglavpknaknedl 237
                  ea++ l + +k+   k  +++  +++++++a+G++ +++n+ ++   +            ++  +klg++ +p q+   +++gg g+ v++ ++++++
  KIR61140.1 270 QEAMDVLVNkMKPLTaKGSGNWfiDEVNAAVAQGKACIAFNWIAASGGLLdpkqstlgttrEQIlDKLGFAtLPSQKtnlVPLGGMGMHVSAYSPAANQ 368
                 5555544442555542366777889******************99998886666666665544225888875664434679****************** PP

                 .HHHHHHHHHTTSHHHHHHHHHH---BS-S-TTTHHHH CS
   SBP_bac_8 238 .aAldFlkwltspenqaalaektgyipvnksaalspev 274
                  +Al F+kw+  p+ q+++a   g +p++++a +spe+
  KIR61140.1 369 aEALNFMKWFERPDIQKKWAA-AGGVPARTDALESPEF 405
                 *********************.88899*****999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3232.89
//
Query:       KIR61141.1  [L=247]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-24   86.2  14.2    3.7e-24   85.5  14.2    1.3  1  FCD             FCD domain
    1.4e-16   59.9   0.6    8.5e-14   51.0   0.1    2.5  2  GntR            Bacterial regulatory proteins, gntR family
    1.5e-07   31.2   3.3    2.6e-07   30.4   0.1    2.6  3  MarR_2          MarR family
    1.8e-05   24.2   0.0    3.4e-05   23.3   0.0    1.4  1  HTH_24          Winged helix-turn-helix DNA-binding
    0.00018   21.6   0.1     0.0058   16.8   0.0    2.4  2  PaaX            PaaX-like protein
    0.00099   19.1   0.2     0.0049   16.9   0.0    2.2  2  HTH_29          Winged helix-turn helix
     0.0017   18.3   0.0     0.0046   16.9   0.0    1.8  1  HTH_11          HTH domain
     0.0026   17.6   0.0     0.0068   16.3   0.0    1.6  1  TrmB            Sugar-specific transcriptional regulator TrmB
     0.0028   18.1   0.1      0.009   16.5   0.0    1.8  2  HTH_27          Winged helix DNA-binding domain
     0.0067   16.1   0.1      0.017   14.9   0.0    1.7  2  HTH_DeoR        DeoR-like helix-turn-helix domain
     0.0094   15.8   0.1      0.031   14.1   0.1    1.9  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
  ------ inclusion threshold ------
      0.019   15.3   0.0      0.067   13.5   0.0    1.9  2  Rrf2            Transcriptional regulator
       0.02   15.0   0.0      0.069   13.3   0.0    1.9  1  HTH_28          Helix-turn-helix domain
      0.024   14.8   0.0       0.59   10.4   0.0    2.3  2  SgrR_N          Sugar transport-related sRNA regulator N-term
      0.036   14.3   0.0      0.069   13.3   0.0    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.036   14.0   0.0      0.095   12.7   0.0    1.7  1  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.037   14.2   0.3        0.1   12.7   0.3    1.7  1  DprA_WH         DprA winged helix domain
      0.042   13.1   0.0       0.08   12.2   0.0    1.4  1  EAP30           EAP30/Vps36 family
      0.067   13.1   0.0       0.14   12.1   0.0    1.5  1  MarR            MarR family
       0.07   12.9   0.0       0.18   11.6   0.0    1.7  1  HTH_10          HTH DNA binding domain
       0.14   11.9   0.0        0.3   10.8   0.0    1.5  1  HTH_41          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5  14.2   4.4e-27   3.7e-24       1     124 [.     100     224 ..     100     225 .. 0.93

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 4.4e-27
         FCD   1 dlyelRalLEpeaarlaarratdadlaeleellealeeaaa...egdleefaeadraFHralaeaagnpvlaelleelrarlrrlrrlalssperlees 96 
                 d++e+R lLEp+aar++a+ra+  ++a l+++le+++e ++     ++ +f   d+aFH ++a  agn+v++e+l +l+ +++ +r  +  + +  + +
  KIR61141.1 100 DMLEVRLLLEPAAARRSAERASLPQVAGLRRMLEEMAELEGgsgPLAYGAFGLRDAAFHDLVALSAGNQVIREALARLHSHVHLFRLHH--DTQVTHLA 196
                 789************************************99555555555*********************************887776..9******* PP

         FCD  97 laeHraildAirardadaAraamrrHle 124
                 +aeH+++++Ai+ard+daA+ amrrH+ 
  KIR61141.1 197 MAEHEEVVAAIAARDPDAAAYAMRRHIL 224
                 **************************96 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.1     1e-16   8.5e-14       1      64 []      27      89 ..      27      89 .. 0.96
   2 !    6.8   0.0    0.0061       5.2      34      55 ..     163     184 ..     161     189 .. 0.78

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 1e-16
                HHHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  1 lyeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                l+++vy+ L  +++s +++pG++  +   La e+gVs t++R AL+r eaeglv+r +  G ++
  KIR61141.1 27 LADEVYDTLLGQLMSLRIEPGSRV-TIDVLARELGVSQTPIRDALNRMEAEGLVVRVPHAGYRI 89
                5799********************.*********************************999765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0061
                 HTS-HHHHHHHHHHHHHTTSEE CS
        GntR  34 fgVsrttvReALrrLeaeglve 55 
                 +  + +++ReAL rL +   + 
  KIR61141.1 163 LSAGNQVIREALARLHSHVHLF 184
                 5678899********9876555 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.1   3.1e-10   2.6e-07      11      56 ..      39      84 ..      38      86 .. 0.95
   2 ?   -0.1   0.1       1.1     9e+02      27      45 ..     102     120 ..     100     121 .. 0.85
   3 ?   -2.6   0.0       6.1   5.2e+03      10      23 ..     203     214 ..     202     226 .. 0.64

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 3.1e-10
                HHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 11 LaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpg 56
                L+ L+ +pg ++t+  lar+lg+s+  +  +l+r++a GLv+r+p 
  KIR61141.1 39 LMSLRIEPGSRVTIDVLARELGVSQTPIRDALNRMEAEGLVVRVPH 84
                788999*************************************975 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.1
                 HHHHHTSSHHHHHHHHHHH CS
      MarR_2  27 larrlglsksavsrilkrL 45 
                 l+ rl l+++a+ r  +r+
  KIR61141.1 102 LEVRLLLEPAAARRSAERA 120
                 567999******9999987 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 6.1
                 HHHHHHCTTTSEEE CS
      MarR_2  10 vLaaLgrrpgrdlt 23 
                 v aa+++r++ d +
  KIR61141.1 203 VVAAIAARDP-D-A 214
                 5678888887.3.3 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0     4e-08   3.4e-05      17      47 ..      49      79 ..      47      80 .. 0.95

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4e-08
      HTH_24 17 risqreLAerlglSpstvnrrlkrLeeeGlI 47
                r ++  LA++lg+S+++++  l+r+e eGl+
  KIR61141.1 49 RVTIDVLARELGVSQTPIRDALNRMEAEGLV 79
                89999************************98 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.8e-06    0.0058      29      57 ..      55      83 ..      34      89 .. 0.84
   2 ?    2.2   0.0      0.24   2.1e+02      33      50 ..     163     180 ..     156     193 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.8e-06
        PaaX 29 llaelGiseslvRaalsRlakaGwlvrek 57
                l  elG+s++ +R al R++++G++vr  
  KIR61141.1 55 LARELGVSQTPIRDALNRMEAEGLVVRVP 83
                6789********************99865 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.24
        PaaX  33 lGiseslvRaalsRlaka 50 
                 l  +++++R al Rl  +
  KIR61141.1 163 LSAGNQVIREALARLHSH 180
                 4557899*******9865 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       3.9   3.3e+03      45      59 ..      15      29 ..       6      33 .. 0.56
   2 !   16.9   0.0   5.7e-06    0.0049      14      41 ..      51      78 ..      36      93 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.9
      HTH_29 45 ldrrrsgrprnrlse 59
                  + +sgr+  rl +
  KIR61141.1 15 TGGTSSGRSGGRLAD 29
                334556666555554 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 5.7e-06
      HTH_29 14 tvsqiAkllglsrrtvyrwlkrfeegGl 41
                t+  +A+ lg+s + ++++l+r+e++Gl
  KIR61141.1 51 TIDVLARELGVSQTPIRDALNRMEAEGL 78
                8999***********************6 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.4e-06    0.0046      11      55 .]      45      88 ..      36      88 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.4e-06
      HTH_11 11 eargpisgeeLAeeLnvSrrtvrrdIkaLeelgvpIesepgrGYr 55
                e  + ++++ LA+eL+vS + +r  + ++e+ g  ++ +p+ GYr
  KIR61141.1 45 EPGSRVTIDVLARELGVSQTPIRDALNRMEAEG-LVVRVPHAGYR 88
                44455****************************.88888888997 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     8e-06    0.0068      23      57 ..      50      84 ..      47      93 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8e-06
                CHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB 23 atadeiaeelgvprskvYevLrsLedkGlVerekg 57
                 t+d +a+elgv+++ + ++L+++e  GlV r++ 
  KIR61141.1 50 VTIDVLARELGVSQTPIRDALNRMEAEGLVVRVPH 84
                688999************************99875 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.1e-05     0.009      13      52 ..      43      83 ..      35      88 .. 0.88
   2 ?   -2.7   0.0       9.9   8.5e+03      20      42 ..     200     222 ..     189     223 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.1e-05
      HTH_27 13 r.hrrrrkkladlcgrlnvedshisyslkkLtekGLvertg 52
                r +++ r+++  l++ l v++++i  +l+++++ GLv+r +
  KIR61141.1 43 RiEPGSRVTIDVLARELGVSQTPIRDALNRMEAEGLVVRVP 83
                4568999******************************9876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 9.9
      HTH_27  20 kladlcgrlnvedshisyslkkL 42 
                 +++ ++    ++  +++y+++++
  KIR61141.1 200 HEEVVAAIAARDPDAAAYAMRRH 222
                 45556666666667777887775 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     2e-05     0.017      14      53 ..      49      89 ..      38      92 .. 0.87
   2 ?   -3.2   0.0       8.7   7.5e+03      31      48 ..     170     187 ..     162     187 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2e-05
    HTH_DeoR 14 klsveelvellgvSeaTiRRDLneLeeqglltRt.hGGavs 53
                 ++++ l+ +lgvS++ iR  Ln +e++gl++R+ h G+++
  KIR61141.1 49 RVTIDVLARELGVSQTPIRDALNRMEAEGLVVRVpHAGYRI 89
                6899**************************99976777765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.7
    HTH_DeoR  31 iRRDLneLeeqglltRth 48 
                 iR  L+ L+  + l R h
  KIR61141.1 170 IREALARLHSHVHLFRLH 187
                 666677777777777776 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   3.6e-05     0.031      16      42 .]      48      74 ..      42      74 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.6e-05
  HTH_AsnC-type 16 aRisyaeLAervGlSestvlrRvrrLe 42
                   +R +   LA+++G+S+++++  ++r+e
     KIR61141.1 48 SRVTIDVLARELGVSQTPIRDALNRME 74
                   5778889*******************8 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.9e-05     0.067      13      58 ..      38      82 ..      30      98 .. 0.88
   2 ?   -2.3   0.0       7.1     6e+03      15      24 ..     193     202 ..     174     211 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.9e-05
                HHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        Rrf2 13 allyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksv 58
                 l+ L  e++++ v+++ +a++ ++s++ ++  l++++ +glv  v
  KIR61141.1 38 QLMSLRIEPGSR-VTIDVLARELGVSQTPIRDALNRMEAEGLVVRV 82
                588999999998.*****************************9654 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.1
                 HHHHHSSTCC CS
        Rrf2  15 lyLakeeeee 24 
                 ++La+ e+ee
  KIR61141.1 193 THLAMAEHEE 202
                 4444444444 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.1e-05     0.069      13      41 ..      50      78 ..      43      83 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.1e-05
      HTH_28 13 hsvreaArelgisrrtvyrWikryeegGi 41
                ++++ +Arelg+s++ +++ ++r e++G+
  KIR61141.1 50 VTIDVLARELGVSQTPIRDALNRMEAEGL 78
                59999*********************996 PP

>> SgrR_N  Sugar transport-related sRNA regulator N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00069      0.59      16      56 ..      46      86 ..      29     102 .. 0.88
   2 ?    2.1   0.0      0.25   2.2e+02      57     108 ..     171     223 ..     166     240 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00069
      SgrR_N 16 kevevtLqelAdvlfCsrRhartlLkkmqeegwleWqpevG 56
                  ++vt++ lA  l  s+  +r  L++m+ eg+++  p++G
  KIR61141.1 46 PGSRVTIDVLARELGVSQTPIRDALNRMEAEGLVVRVPHAG 86
                56789****************************99888887 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.25
      SgrR_N  57 RgkrsrLtfllepeelqeqlaeklleqgkiekalalld.kdkaalakllkskl 108
                 R   +rL+ +++   l +    + l+  ++e+++a ++ +d++a a  +++++
  KIR61141.1 171 REALARLHSHVHLFRLHHDTQVTHLAMAEHEEVVAAIAaRDPDAAAYAMRRHI 223
                 66778888889999999988888888888888888777577777776666665 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.1e-05     0.069      23      58 ..      50      85 ..      43      87 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.1e-05
                    B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
  Fe_dep_repress 23 vktkdlaerLnvspssVsemlkkLekdGyveyekyk 58
                    v+   la++L+vs   +   l+++e +G+v+ ++  
      KIR61141.1 50 VTIDVLARELGVSQTPIRDALNRMEAEGLVVRVPHA 85
                    566679************************988865 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00011     0.095      21      53 ..      49      81 ..      26      90 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglisr 53
                ++t + lA+ lG+++  +  +l++++ egl+ r
  KIR61141.1 49 RVTIDVLARELGVSQTPIRDALNRMEAEGLVVR 81
                78999*************************984 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   0.00012       0.1      24      59 ..      48      83 ..      25      84 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00012
     DprA_WH 24 ePvhvDqLvrrtglpaaevsaaLleLELaGlverlp 59
                + v++D L+r++g++   +  aL  +E +Glv r p
  KIR61141.1 48 SRVTIDVLARELGVSQTPIRDALNRMEAEGLVVRVP 83
                589*******************************98 PP

>> EAP30  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.4e-05      0.08     190     234 ..      42      81 ..      10      82 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.4e-05
       EAP30 190 llaekssgggvtaselaeeeenlgwsvarakeaLeelereGllwv 234
                 l  e   g+ vt + la+e   lg+s   +++aL+++e+eGl+++
  KIR61141.1  42 LRIEP--GSRVTIDVLARE---LGVSQTPIRDALNRMEAEGLVVR 81 
                 33333..357******888...********************997 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00016      0.14      19      52 ..      51      84 ..      38      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00016
                EHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEE CS
        MarR 19 svseLakklgvskstvtrvldrLekkGlieRsks 52
                ++  La+ lgvs++ +  +l r+e +Gl+ R ++
  KIR61141.1 51 TIDVLARELGVSQTPIRDALNRMEAEGLVVRVPH 84
                4458***************************987 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00021      0.18      23      48 ..      49      74 ..      45      76 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
      HTH_10 23 rvtlkeLAkelGIskstlsehLrkae 48
                rvt++ LA elG+s++ + + L++ e
  KIR61141.1 49 RVTIDVLARELGVSQTPIRDALNRME 74
                89********************9987 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00035       0.3       8      36 ..      51      79 ..      46      82 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
      HTH_41  8 tIeelakeleLSvGlvQkALklLeddkai 36
                tI+ la el++S   +  AL+ +e+++ +
  KIR61141.1 51 TIDVLARELGVSQTPIRDALNRMEAEGLV 79
                9*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1713.21
//
Query:       KIR61142.1  [L=189]
Description: peptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  135.6   0.0    1.6e-39  135.3   0.0    1.0  1  DJ-1_PfpI  DJ-1/PfpI family


Domain annotation for each model (and alignments):
>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3   0.0     9e-44   1.6e-39       2     164 ..       3     178 ..       2     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 135.3 bits;  conditional E-value: 9e-44
                 EEEEEEETTBEHHHHHHHHHHHHHTTEEEEEEESS..............TSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHH CS
   DJ-1_PfpI   2 kvlvlladgvedvElivpvdvlkragikvdvvsvd..............keevkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlrenekvvel 86 
                 ++l+l++d +e++++++p+ + +++g++vdv s +              ++ +++++G k++vd+ + +v++++yDal++pGGra pe +r ++ v+ +
  KIR61142.1   3 RALLLTGDAAEELDTMYPYYRVQEGGWDVDVSSRTrrdvqlvihefdpnSDAYVEKNGRKLPVDVPWAEVDVERYDALIIPGGRA-PEWIRVDADVRRI 100
                 799******************************99*************999**********************************.************* PP

                 HHHHHHTT-EEEEETTTHHHHHHTTTTTTSEE--SGGGHHHHHHTTSEE-SSSEEEETTEEEESSGGGHHHHHHHHHH CS
   DJ-1_PfpI  87 vkefaekgklvaaICagpqlLaaagvlkgrrvTsypavkdklekagakyvdkrvvvdgnlvTsrgpgaaiefalelle 164
                 + +f+ ++ ++a +C+g+q+ a  g+lkgr+++++p ++ ++e+aga+++d + vvdgnlv+ rg++++++f+++++e
  KIR61142.1 101 TEHFFARNLPIALVCHGAQVPAVYGLLKGRKTACFPPITGDMENAGATVIDAPDVVDGNLVSCRGWPDMPQFGRAMME 178
                 **************************************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1448.65
//
Query:       KIR61143.1  [L=273]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-22   80.2   0.5    1.7e-16   60.6   2.2    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
    3.1e-19   70.5  23.3    3.6e-19   70.2  23.3    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    2.6e-18   66.2   0.3    3.4e-18   65.8   0.3    1.1  1  Hydrolase_4    Serine aminopeptidase, S33
    2.2e-07   30.8   0.4    3.8e-07   30.0   0.4    1.4  1  Esterase       Putative esterase
    4.2e-06   26.7   0.2     0.0068   16.2   0.0    2.8  3  Abhydrolase_2  Phospholipase/Carboxylesterase
    0.00047   20.0   0.1     0.0012   18.6   0.1    1.7  2  PGAP1          PGAP1-like protein
     0.0006   19.5   0.1     0.0013   18.4   0.1    1.5  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
      0.001   19.2   0.6     0.0013   18.9   0.6    1.3  1  Thioesterase   Thioesterase domain
     0.0033   17.3   0.4     0.0055   16.6   0.4    1.3  1  Lipase_3       Lipase (class 3)
     0.0036   17.1   0.0     0.0063   16.3   0.0    1.4  1  Abhydrolase_5  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.014   15.3   0.1       0.39   10.6   0.1    2.1  2  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
      0.021   14.4   0.1      0.031   13.8   0.1    1.2  1  DUF2974        Protein of unknown function (DUF2974)
      0.024   14.1   0.5        4.5    6.7   0.2    2.3  2  Peptidase_S9   Prolyl oligopeptidase family
      0.039   14.1   0.1        2.8    8.1   0.0    2.3  2  Abhydrolase_4  TAP-like protein
      0.042   13.4   1.1       0.07   12.6   1.1    1.3  1  Acyl_transf_1  Acyl transferase domain
      0.058   12.9   0.1       0.91    9.0   0.1    2.1  2  DLH            Dienelactone hydrolase family
       0.25   10.0   0.8       0.46    9.1   0.5    1.5  2  AXE1           Acetyl xylan esterase (AXE1)
       0.38   10.6   3.6       0.34   10.7   0.9    2.2  2  Ser_hydrolase  Serine hydrolase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   2.2   1.7e-19   1.7e-16       1     120 [.      23     139 ..      23     151 .. 0.83
   2 !   16.1   0.0   6.8e-06    0.0067     206     257 .]     199     256 ..     157     256 .. 0.84

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 1.7e-19
                    SEEEEE-S.TTT..CGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_1   1 pvlvilhG.lpg..ssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaae 93 
                    p++++lhG +pg  +s+ wa+   a+aL    ++v+++D+ G+g+++ +     ++ g+    +    ++dalg+++ ++vGhSmGG++ala+aa 
     KIR61143.1  23 PAVLMLHGsGPGttGSGAWAA--TAQALGT-SWHVLAPDQAGFGRTPVPAG---SRGGLRLWTEQAAGLMDALGVEHYAVVGHSMGGAVALALAAA 112
                    688999986677889999***..******9.*******************9...555654345555666*************************** PP

                    HGGGEEEEEEESECSSCCHHHHHHHHH CS
  Abhydrolase_1  94 yperVkalvllgaidpaaslieaqrqq 120
                     pe V+++v+++++  + ++ +a++ +
     KIR61143.1 113 RPEQVSRVVAVSTMGAPGAPLSADLDA 139
                    *************65555555555544 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 6.8e-06
                    C.....THHHHSEEEEEEETTCSSSCH.HHHHHHHHCHTSEEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 206 e.....lknvlaptlvisgtsDplvpp.kaledlaqllpkkrlvvisdagHlaflegp 257
                          l ++ ap+l+++g++D+++p   +   l ++l ++rl+v+  +gH   +e+p
     KIR61143.1 199 TlsartLAAIRAPVLLVHGAEDRVTPLaASTLPLLEHLADVRLHVLGRCGHVPAIEHP 256
                    045555889999****************9999999*****************999986 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2  23.3   3.7e-22   3.6e-19       1     218 [.      25     260 ..      25     262 .. 0.58

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 3.7e-22
                    EEEE--GC........GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH.CHHH....HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.. CS
  Abhydrolase_6   1 vlllHGag...ssassWlvapLaallaagvhvlapDlpGhGrsdpppldled.ladl....aalldelaagggpvvlvGHSlGGalalaaapla.. 86 
                    vl+lHG+g   +++++W+    a +l+  +hvlapD  G+Gr +p p + +  l+ +    a l d+l  g     +vGHS+GGa+ala+a++   
     KIR61143.1  25 VLMLHGSGpgtTGSGAWA--ATAQALGTSWHVLAPDQAGFGR-TPVPAGSRGgLRLWteqaAGLMDAL--GVEHYAVVGHSMGGAVALALAAARpe 115
                    799***774435599**6..5566668889***********5.5555444443444421124455555..3455599********99994444478 PP

                    ..EE.EEES-...----TTT.S----TTHHHHHHTT-C.CCCHCCHS-HSCCCCHHH.....C.....CCCHCHCCCGHHHHCCHHCHTTCCHHTT CS
  Abhydrolase_6  87 lvvg.vlldppp.talpagl.laaalelllallallrl.lawlsreplprlfladed.....a.....daawrarlarlaallaglgllpaaawad 168
                    +v++ v++++++ +++p++  l+a+++ ++++++++    +++    l++ ++ d +     a      aa++  + +++a +a + +l+a+ +a+
     KIR61143.1 116 QVSRvVAVSTMGaPGAPLSAdLDAIWAAPAGPPGARDMlSRLV----LDQALVTDAAvetraAamragAAAFASLFPPPRARWADDLTLSARTLAA 207
                    5555566666332133333343333333333333222222222....3333333222111110112223555555555555555555666778888 PP

                    -TTGCEEE.CTT-CHHHHCHHCCCH.....STTEEETCE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 169 lpvpllvl.ggeDplvprllerlla.....qagarlpvvlpgaGHlphleepdeva 218
                    +++p+l++ g+eD++ p  l++        +a++rl +vl ++GH+p +e+p+e+ 
     KIR61143.1 208 IRAPVLLVhGAEDRVTP--LAASTLpllehLADVRL-HVLGRCGHVPAIEHPHEFR 260
                    88888777579999666..33333334556788999.***************9996 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.3   3.4e-21   3.4e-18       7     234 ..      25     251 ..      21     256 .. 0.82

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 3.4e-21
  Hydrolase_4   7 vvlvHGla...ehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkv 101
                  v+++HG +     sg+ a +a+aL    ++v+a D+ G+Gr++   g    +  +++ +a +++++  eh      ++GhSmGG++al++++ +p++v
   KIR61143.1  25 VLMLHGSGpgtTGSGAWAATAQALGT-SWHVLAPDQAGFGRTPVPAGSRGGLRLWTEQAAGLMDALGVEH----YAVVGHSMGGAVALALAAARPEQV 117
                  67777754222567888888888865.69**************555555599999999999999999777....789********************* PP

  Hydrolase_4 102 aglilsaPalkikakl........kappllklllkllgkllpklqvsnnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrleeraakit 191
                  ++++ ++++ ++ a+l         ap+    ++ +l++l+ +  +   ++a+  +r  +++a  +a   +   +++r++ +l+  + +l    a+i+
   KIR61143.1 118 SRVVAVSTMGAPGAPLsadldaiwAAPAGPPGARDMLSRLVLDQAL--VTDAAVETRAAAMRAGAAAFASLFPPPRARWADDLTLSARTL----AAIR 209
                  *************999666555432333333377788887777666..7999******************************99887665....6799 PP

  Hydrolase_4 192 lPllllhGeaDkvvdpeas.relyerlgskdktlklypglyHel 234
                  +P+ll+hG++D+v++ +as   l+e+l+  d++l++   + H  
   KIR61143.1 210 APVLLVHGAEDRVTPLAAStLPLLEHLA--DVRLHVLGRCGHVP 251
                  ***************9999667888888..89999998888865 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.4   3.8e-10   3.8e-07     117     159 ..      94     143 ..      84     207 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 3.8e-10
                 EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CC.......HCHHHC CS
    Esterase 117 ravaGqSmGGlgALilalkhpdrFgsvssfSpivnps.......namWgq 159
                  av+G+SmGG +AL la+ +p++ ++v + S +  p        +a+W +
  KIR61143.1  94 YAVVGHSMGGAVALALAAARPEQVSRVVAVSTMGAPGaplsadlDAIWAA 143
                 59*****************************7766556666666555554 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.86   8.5e+02      14      31 ..      22      39 ..      14      54 .. 0.67
   2 !   16.2   0.0   6.8e-06    0.0068     105     139 ..      92     126 ..      78     138 .. 0.85
   3 !    6.9   0.0     0.005         5     131     175 ..     178     228 ..     162     250 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.86
                   -EEEEEE--TT--SHHHH CS
  Abhydrolase_2 14 qavviflHGlGdsghawa 31
                    ++v++lHG G    + +
     KIR61143.1 22 GPAVLMLHGSGPGTTGSG 39
                   5789****9986543333 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 6.8e-06
                    GGEEEEEETHHHHHHHHHHHT-SS--SEEEEES-- CS
  Abhydrolase_2 105 sriiigGFSqGaalalylaltlpkklggivafsga 139
                    ++ +++G S+G+a+al+la + p++++++va+s +
     KIR61143.1  92 EHYAVVGHSMGGAVALALAAARPEQVSRVVAVSTM 126
                    666899**************************986 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.005
                    SEEEEES---TT.GGGTTTTS-GGG.....GG-EEEEEEETT-SSS-HHHH CS
  Abhydrolase_2 131 ggivafsgalpl.sqklessatavt.....kklpilqiHgeeDpvvplalg 175
                    +g+ af + +p+ ++ +++  t+++        p+l++Hg eD v pla +
     KIR61143.1 178 AGAAAFASLFPPpRARWADDLTLSArtlaaIRAPVLLVHGAEDRVTPLAAS 228
                    46666666554414567766666662222256799************9865 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.3e-06    0.0012      94     128 ..      95     129 ..      88     141 .. 0.67
   2 ?   -3.2   0.0       5.7   5.7e+03       5      13 ..     210     218 ..     209     220 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.3e-06
       PGAP1  94 iliGHSmGGivaraaltlknyikqsvntiltlasP 128
                  ++GHSmGG va a++  +  + + v  + t+++P
  KIR61143.1  95 AVVGHSMGGAVALALAAARPEQVSRVVAVSTMGAP 129
                 69**********66655555444555555555555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.7
       PGAP1   5 ipVlFvpGn 13 
                 +pVl+v+G 
  KIR61143.1 210 APVLLVHGA 218
                 69******6 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   1.3e-06    0.0013     104     267 ..      95     249 ..      92     251 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.3e-06
                    EEEEECHHHHHHHHHCTT--TTEEEEEEECE-S-TCCC.CSECTTEEBCCHHHHHHHHHCCCCHHTSSS-STTHHHHHHHHHHCHCCCCCCTTHHH CS
  Peptidase_S15 104 gmtGiSYlGttqllaaatgvpalkaivpeaaisdlydd.yyregGlvrapgglswedldllaealtsrradegdalkaaaryeaasdellaeldrq 198
                    +++G S +G ++l++aa +++++  +v+++++       ++    + +ap+g ++ + d+l+  + ++     +a++++a+     ++ +++++ +
     KIR61143.1  95 AVVGHSMGGAVALALAAARPEQVSRVVAVSTMGAPGAPlSADLDAIWAAPAGPPG-ARDMLSRLVLDQALVTDAAVETRAA-----AMRAGAAAFA 184
                    789****************************998888756666666667777777.4444444444444443333333333.....3333333333 PP

                    THHHHCCCC--SSSHHHHTT-HHH.HH.CT--S-EEEEEECCSSTTC..CHHHHHHHHHCCTT-EEEEECECT CS
  Peptidase_S15 199 tpveselletgdydafWkdrnlse.da.dkvkapvllvgGwnDwnvk..ngaiklyealkapgvklilgpwtH 267
                           +  ++ +a W d  + + ++ ++++apvllv+G  D       +++ l e+l + +   +lg+  H
     KIR61143.1 185 -------SLFPPPRARWADDLTLSaRTlAAIRAPVLLVHGAEDRVTPlaASTLPLLEHLADVR-LHVLGRCGH 249
                    .......446777777777666642336***************54433355566666666665.445555555 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.6   1.3e-06    0.0013      67     102 ..      93     128 ..      26     184 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.3e-06
                   SEEEEEETHHHHHHHHHHHHHHHCT-SEEEEEEESC CS
  Thioesterase  67 PyalfGhSlGgllAfevArqLesqGlavkslflids 102
                    ya++GhS+Gg++A ++A++  +q + v ++   ++
    KIR61143.1  93 HYAVVGHSMGGAVALALAAARPEQVSRVVAVSTMGA 128
                   79****************998888776666665555 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.4   5.5e-06    0.0055      68     105 ..      95     129 ..      75     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.5e-06
                 EEEEETHHHHHHHHHHHHHHHTT-SS---EEEEEES-- CS
    Lipase_3  68 vvtGHSLGgalAlLaaldlvengenekkkvtvvtfGqP 105
                 +v+GHS+Gga+Al +a+   e+    ++ v v t+G+P
  KIR61143.1  95 AVVGHSMGGAVALALAAARPEQV---SRVVAVSTMGAP 129
                 69**********97777655555...679999999998 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.3e-06    0.0063      44      87 ..      80     123 ..      75     141 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.3e-06
  Abhydrolase_5  44 nkaeeiikeapklekfvvgGhslGGvvasrfaaee.ekiegvvfl 87 
                    ++a+ ++++  ++e++ v Ghs+GG+va  +aa   e++  vv +
     KIR61143.1  80 EQAAGLMDA-LGVEHYAVVGHSMGGAVALALAAARpEQVSRVVAV 123
                    566667774.459**************998887553788877765 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00039      0.39      25      54 ..      95     125 ..      87     140 .. 0.90
   2 ?    2.5   0.0      0.12   1.2e+02     112     142 ..     206     236 ..     195     255 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
                 EEEEETHHHHHHHHHHHHSS.SEEEEEEES- CS
      BAAT_C  25 gllGiSkGgelalllasflk.kisavvling 54 
                 +++G+S Gg +al+la+  + ++s vv+++ 
  KIR61143.1  95 AVVGHSMGGAVALALAAARPeQVSRVVAVST 125
                 89**************99999*****99875 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.12
                 GG--SEEEEEEETT-SSS-HHHHHHHHHHHH CS
      BAAT_C 112 ekakgpillvvgedDknwpSkesaekaserL 142
                   +++p+llv g +D+++p + s+  + e L
  KIR61143.1 206 AAIRAPVLLVHGAEDRVTPLAASTLPLLEHL 236
                 56899************99887775555555 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   3.1e-05     0.031      85     124 ..      93     131 ..      79     139 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.1e-05
     DUF2974  85 kiylgGhSkGGnlAvyaamnaeddlqeriskiysfDgpGf 124
                 ++ ++GhS GG +A+  a+  +++++ r+ ++ ++ +pG 
  KIR61143.1  93 HYAVVGHSMGGAVALALAAARPEQVS-RVVAVSTMGAPGA 131
                 5899**********977777666666.9*****9*99995 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2    0.0045       4.5      64      94 ..      92     122 ..      79     126 .. 0.84
   2 ?    5.4   0.0     0.011        11     142     162 ..     208     228 ..     192     260 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0045
                   GGEEEEEETHHHHHHHHHHHH-GGG-SEEEE CS
  Peptidase_S9  64 erlaitGgSyGGyltgaalnqrpdlFkaava 94 
                   e+ a+ G+S GG +++a+++ rp+  + +va
    KIR61143.1  92 EHYAVVGHSMGGAVALALAAARPEQVSRVVA 122
                   56799***************99997666665 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.011
                   ---EEEEEEETT-SSS-THHH CS
  Peptidase_S9 142 aypplLlihGlaDdrvppaea 162
                   + +p+Ll+hG +D  +p+a +
    KIR61143.1 208 IRAPVLLVHGAEDRVTPLAAS 228
                   789**********99998544 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.065        65      32      71 ..      19      59 ..       3      69 .. 0.76
   2 ?    8.1   0.0    0.0028       2.8      33      52 ..     208     227 ..     188     269 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.065
  Abhydrolase_4 32 kga.apvLllqnerDpaTPyegakklakalggavlvtvege 71
                    ga + vL+l + +  +T+    +++a+alg + +v + ++
     KIR61143.1 19 SGAgPAVLMLHGSGPGTTGSGAWAATAQALGTSWHVLAPDQ 59
                   345599********9999999999********976665544 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0028
  Abhydrolase_4  33 gaapvLllqnerDpaTPyeg 52 
                      apvLl+ +  D +TP++ 
     KIR61143.1 208 IRAPVLLVHGAEDRVTPLAA 227
                    358**************975 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.1     7e-05      0.07      74     105 ..      83     113 ..      75     129 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7e-05
                    HHHHHHTT-TTSEEEE-TTHHHHHHHHCCSSS CS
  Acyl_transf_1  74 aellkskGvrpaavvGHSlGElAaavvagals 105
                    a l+ + Gv+  avvGHS+G   a++ a a  
     KIR61143.1  83 AGLMDALGVEHYAVVGHSMGGAVALALA-AAR 113
                    55789***************87666544.444 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00092      0.91      97     127 ..      91     122 ..      81     138 .. 0.85
   2 ?    1.8   0.0      0.15   1.5e+02     139     162 ..     204     227 ..     168     249 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00092
         DLH  97 tkkvgvvGfCmGGalalllaaev.pevdaava 127
                 ++  +vvG  mGGa+al+laa   ++v ++va
  KIR61143.1  91 VEHYAVVGHSMGGAVALALAAARpEQVSRVVA 122
                 56779**************9998788888876 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.15
         DLH 139 eaakikapilalfgeeDefipade 162
                   a i ap+l ++g eD + p ++
  KIR61143.1 204 TLAAIRAPVLLVHGAEDRVTPLAA 227
                 556799***********9887664 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.5   0.00047      0.46     174     202 ..      92     121 ..      80     125 .. 0.75
   2 ?   -2.9   0.0       2.2   2.1e+03     257     274 ..     207     224 ..     203     227 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00047
                 EEEEEEEETHHHHHHHHHHHH-S.S-SEEE CS
        AXE1 174 eRvavlGasqGGalalavaalek.rikavv 202
                 e  av+G+s GGa+ala aa  + ++  vv
  KIR61143.1  92 EHYAVVGHSMGGAVALALAAARPeQVSRVV 121
                 67799************9987751455555 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.2
                 C--S-EEEEEETT-SSS- CS
        AXE1 257 rvkaevllsvgLeDevcp 274
                  ++a+vll+ g eD v+p
  KIR61143.1 207 AIRAPVLLVHGAEDRVTP 224
                 5899************98 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.9   0.00034      0.34      55      91 ..      92     127 ..      70     183 .. 0.77
   2 ?   -0.8   0.0       1.2   1.2e+03      36      60 ..     188     215 ..     172     218 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00034
                    TTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--S CS
  Ser_hydrolase  55 ekvvlvAHSlgclavlhaaelqlakkvagalLVapad 91 
                    e+  +v HS+g +++l++a ++++++v +++ V+   
     KIR61143.1  92 EHYAVVGHSMGGAVALALA-AARPEQVSRVVAVSTMG 127
                    34679*******9999999.99999999999998765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.2
                    S--HHHHHHHHH...HHHHC-STTEEEE CS
  Ser_hydrolase  36 kPdledWvaale...aaveaaeekvvlv 60 
                     P +++W++ l    ++++a++++v+lv
     KIR61143.1 188 PPPRARWADDLTlsaRTLAAIRAPVLLV 215
                    6889999999962224566677776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2105.04
//
Query:       KIR61144.1  [L=109]
Description: ArsR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-12   45.6   0.3    5.2e-12   45.6   0.3    1.6  2  HTH_20     Helix-turn-helix domain
    1.1e-10   41.2   0.0    1.7e-10   40.6   0.0    1.2  1  HTH_5      Bacterial regulatory protein, arsR family
    3.3e-08   33.3   0.4    7.2e-08   32.2   0.2    1.6  2  MarR_2     MarR family
    2.6e-05   24.1   0.1    6.3e-05   22.9   0.1    1.7  1  HTH_Crp_2  Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.15   11.9   0.0    1.1  1  TrmB       Sugar-specific transcriptional regulator TrmB


Domain annotation for each model (and alignments):
>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.3   1.5e-15   5.2e-12       5      61 .]      15      70 ..       9      70 .. 0.95
   2 ?   -2.1   0.0       1.2   4.2e+03      22      35 ..      77      90 ..      75     100 .. 0.66

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 1.5e-15
                HHHS-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTEE CS
      HTH_20  5 eALahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvregr 61
                +AL++P+R+r+l aL r+++  +++la++l++++++ls+HL  L+  gLv  + egr
  KIR61144.1 15 HALSDPTRARLLLAL-RDGPGYPAQLADLLGTTRQNLSNHLTCLRGCGLVVATPEGR 70
                79*************.****************************99****9999997 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                CTTB-HHHHHHHHT CS
      HTH_20 22 aegltaselaerld 35
                a+++ a +l ++l+
  KIR61144.1 77 ADPRLAHALGDLLG 90
                55666666666665 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   4.8e-14   1.7e-10       1      45 [.      19      63 ..      19      64 .. 0.99

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 4.8e-14
                SHHHHHHHHHHTTSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  1 dptRlkILklLaegelcvcelaeelglsqstvShHLkkLreaGLV 45
                dptR ++L +L++g+ +  +la+ lg ++ ++S HL +Lr +GLV
  KIR61144.1 19 DPTRARLLLALRDGPGYPAQLADLLGTTRQNLSNHLTCLRGCGLV 63
                8*******************************************9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.99   3.6e+03       4      15 ..       3      14 ..       2      18 .. 0.73
   2 !   32.2   0.2     2e-11   7.2e-08       2      61 ..      16      71 ..      15      73 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.99
                -HHHHHHHHHHH CS
      MarR_2  4 tpaqarvLaaLg 15
                t+++ +vLa  g
  KIR61144.1  3 TLTHGQVLARFG 14
                678888887655 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 2e-11
                T--.HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
      MarR_2  2 glt.paqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61
                +l+ p+ ar+L+aL+++pg    +++la+ lg +++++s++l  L   GLv+ +p    +R
  KIR61144.1 16 ALSdPTRARLLLALRDGPG---YPAQLADLLGTTRQNLSNHLTCLRGCGLVVATPE--GRR 71
                56449**************...9****************************98854..665 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   1.8e-08   6.3e-05      25      62 ..      37      79 ..      23      85 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.8e-08
                HHHHHHTTSSHHHHHHHHHHHHHTTSEE.E..TEE..EEES-H CS
   HTH_Crp_2 25 eelAsmlGltretvsrilseLkreglis.r..grr..irildl 62
                ++lA++lG+tr+ +s  l+ L+  gl+  +  grr   ++ d+
  KIR61144.1 37 AQLADLLGTTRQNLSNHLTCLRGCGLVVaTpeGRRtrYELADP 79
                69************************99844444335777776 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.3e-05      0.15      19      67 ..      30      79 ..      23      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.3e-05
                HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEES.STTTEEEE--H CS
        TrmB 19 klgpatadeiaeelgvprskvYevLrsLedkGlVerek.grpklYravdp 67
                + gp    ++a  lg  r++  + L  L  +GlV   + gr+++Y+ +dp
  KIR61144.1 30 RDGPGYPAQLADLLGTTRQNLSNHLTCLRGCGLVVATPeGRRTRYELADP 79
                667777889999**********************999945688****999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 817.56
//
Query:       KIR61145.1  [L=132]
Description: glyoxalase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-10   38.8   0.0      2e-09   37.7   0.0    1.6  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    7.9e-05   22.9   0.0     0.0069   16.6   0.0    2.2  2  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
     0.0067   17.2   0.1      0.014   16.2   0.1    1.6  1  Glyoxalase_6  Glyoxalase-like domain
  ------ inclusion threshold ------
      0.048   13.8   0.1       0.11   12.7   0.1    1.6  2  AbiEi_4       Transcriptional regulator, AbiEi antitoxin
      0.085   12.8   0.0       0.23   11.4   0.0    1.7  1  Glyoxalase_2  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   5.7e-13     2e-09       5     127 ..       8     127 ..       4     128 .. 0.76

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 5.7e-13
                 EE..EEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGEE CS
  Glyoxalase   5 va..llvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvkv 101
                 +   ++v+d++++++FY++ LG++ ++  +   ++   ++++  +gg  +  v+ +++ g+ +             + +  v+d+++ +d+l++agv +
  KIR61145.1   8 LRasIAVSDIQRAVAFYEGRLGLRPLRSGP--SADIAGGSRVYGSGGVAALNVYQSVTAGKSPAT-----------LATWYVDDIERIVDELASAGVGF 93 
                 54559*************************..666666666666666555555666666655555...........888899**************888 PP

                 EEEEECHHCTEEEEE........EEEETTSEEEE CS
  Glyoxalase 102 vaepgrhyfgalysf........yfrDpdGille 127
                  +  + +   +++++        +f+DpdG+++ 
  KIR61145.1  94 IRYDQLDHDARGITAragggriaWFQDPDGNTFA 127
                 876555555555555778888889********96 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.9e-06    0.0069       5      94 ..      12      94 ..       9     108 .. 0.72
   2 !    8.2   0.0   0.00083         3       5      36 ..      74     103 ..      70     129 .. 0.56

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.9e-06
                  EE-S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETTEEEEEEEESSTT-THHHTS-EEEEEEEEES-HHHHHHHHCTTTEEEE CS
  Glyoxalase_4  5 ivVeDleaavarfsallGvgpwqryrdepqevdlafallgsgsvqieLieplegpeflaehgeglhhlaywvddldaavarleeqGfevv 94
                  i+V D+++ava++++ lG++p +  ++ +      +  +g+       +++l+  +++ +++       + vdd++++v++l+++G+ ++
    KIR61145.1 12 IAVSDIQRAVAFYEGRLGLRPLRSGPSADIAGGSRVYGSGG-------VAALNVYQSVTAGKSPATLATWYVDDIERIVDELASAGVGFI 94
                  89********************9987776655555555555.......345555445444444444445558999999999999998776 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00083
                   EE-S-HHHHHHHHHH.TT-EESS--E.EETTT CS
  Glyoxalase_4   5 ivVeDleaavarfsallGvgpwqryrdepqev 36 
                   + V+D+e+ v++++   Gvg+++ y + ++++
    KIR61145.1  74 WYVDDIERIVDELAS-AGVGFIR-YDQLDHDA 103
                   556666666666665.6666542.23333333 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   3.9e-06     0.014       3     106 ..      11     128 ..       9     129 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.9e-06
  Glyoxalase_6   3 vldaadpaalaaFwaaalgweveree..aaledpegvgpaaedaatllfqrvpepaknrvHldl.avedldaevarlvalGArvlreprdgthgr.. 94 
                    ++++d ++++aF++  lg++  r    a ++  + v   ++ aa  + q v  ++k +  l    v+d+++ v++l ++G   +r ++ ++ +r  
    KIR61145.1  11 SIAVSDIQRAVAFYEGRLGLRPLRSGpsADIAGGSRVYGSGGVAALNVYQSVT-AGKSPATLATwYVDDIERIVDELASAGVGFIRYDQLDHDARgi 106
                   57899***************999999442222222222222222233333333.5777777777689**************9999888877777789 PP

  Glyoxalase_6  95 ..........vlaDPeGneFcv 106
                              ++DP+Gn F v
    KIR61145.1 107 taragggriaWFQDPDGNTFAV 128
                   999*****************87 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.6   1.3e+04      22      29 ..      64      71 ..      63      73 .. 0.80
   2 ?   12.7   0.1   2.9e-05      0.11       2      28 ..      82     110 ..      81     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.6
     AbiEi_4 22 aGispsal 29
                aG+sp +l
  KIR61145.1 64 AGKSPATL 71
                79999877 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.9e-05
     AbiEi_4   2 rlpelasrqvGlfttrel..eaaGispsa 28 
                  ++elas +vG++++++l   a+Gi+++a
  KIR61145.1  82 IVDELASAGVGFIRYDQLdhDARGITARA 110
                 789***************98889999987 PP

>> Glyoxalase_2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.4e-05      0.23       6     113 ..      12     128 ..       8     132 .] 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.4e-05
                   -EES-HHHHHHHHHHTT---EEEE-SSEEEETTS-EEE.EH.HHHHH-------S--SS-EEEEEES-HHHHHHHH..GGGS-EEEE.........E CS
  Glyoxalase_2   6 lvvkdieeskkFYedvlelkikldfGenvsfetgfalk.ed.lkelinldesiaeqsnnfeLyFevedvdaflqklkeaeniellhe.........l 91 
                   ++v di+++  FYe +l l+  l  G      +g  +  ++ +++l  +++  a +s      + v+d++ ++++l +a+ + ++ +         +
    KIR61145.1  12 IAVSDIQRAVAFYEGRLGLRP-LRSGPSADIAGGSRVYgSGgVAALNVYQSVTAGKSPATLATWYVDDIERIVDELASAG-VGFIRYdqldhdargI 106
                   7899**************985.4579999999999995344266665555555558888888999***********8776.7777532212222226 PP

                   EE-TTS-EEEEEE-TT--EEEE CS
  Glyoxalase_2  92 kekpWgqrvirfyDpDkhiiEi 113
                   + ++ g r++ f DpD++   +
    KIR61145.1 107 TARAGGGRIAWFQDPDGNTFAV 128
                   6788999*********998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 975.61
//
Query:       KIR61146.1  [L=275]
Description: hypothetical protein TK50_25650 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-21   75.6   0.8      4e-21   75.0   0.8    1.3  1  Peptidase_M23    Peptidase family M23
  ------ inclusion threshold ------
      0.014   14.8   2.5      0.043   13.2   2.5    1.9  1  UCR_Fe-S_N       Ubiquitinol-cytochrome C reductase Fe-S subu
       0.16   11.8   0.0       0.29   11.0   0.0    1.4  1  Biotin_lipoyl_2  Biotin-lipoyl like


Domain annotation for each model (and alignments):
>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.8   6.6e-25     4e-21       4      90 ..      92     184 ..      89     191 .. 0.87

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 6.6e-25
                    SSEEEEETTT-EEEESSSEEEEEEEE..ETTTEEEEEEEECTCEEEEEEEESEESS-TTEEE-TTCEEEEEBSTSSCS....SSEEEEEEEET CS
  Peptidase_M23   4 kGidiaapkgtpVlAaadGtVvfagk..kegyGnvviidhgdgystlyahlskisvkegqkVkaGqvIGtvgstgrst....gphLhfeirkn 90 
                     G+d+a+ +gtpV+Aaa+Gt+ f+++  ++++G vv + h+dg +t+ +hls+i+v++gq+V++Gq+I+++g++ + +    gph+h +++ n
     KIR61146.1  92 PGTDYAVGTGTPVMAAANGTIRFVKTdtSTATGRVVGMAHDDGNYTRHLHLSSIAVSTGQRVSRGQTIAYSGASANGSdygvGPHVHTSLWLN 184
                    7********************88887534466****************************************7776555889*****999744 PP

>> UCR_Fe-S_N  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.5   7.3e-06     0.043      10      33 ..      34      57 ..      31      57 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.3e-06
  UCR_Fe-S_N 10 tRRDFLyiATgavgaVGaaaaawP 33
                +RR F+  A+ a+ +V aa+a++P
  KIR61146.1 34 SRRGFITGAALAASGVSAAFALLP 57
                8*********************99 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.9e-05      0.29      13      31 ..     142     160 ..     141     161 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.9e-05
  Biotin_lipoyl_2  13 VaqlnVkdGqrVkaGdvLa 31 
                      +++++V  GqrV  G+++a
       KIR61146.1 142 LSSIAVSTGQRVSRGQTIA 160
                      5789**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1880.53
//
Query:       KIR61147.1  [L=3943]
Description: hypothetical protein TK50_25665 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.7e-183  606.3   9.1    2.2e-92  309.2   0.2    4.0  4  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
   4.6e-177  588.2   1.4    4.8e-90  302.3   0.9    2.4  2  Acyl_transf_1    Acyl transferase domain
   2.9e-118  392.2   0.9    3.9e-59  199.6   0.1    3.6  3  KR               KR domain
   7.8e-106  353.6  20.8    1.1e-54  185.7   6.4    2.8  2  PS-DH            Polyketide synthase dehydratase
    7.2e-87  287.3   3.9    8.2e-43  145.2   0.0    3.3  2  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    1.5e-34  118.9   0.0    7.2e-16   58.6   0.0    2.8  2  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    5.3e-28   97.2   0.0      4e-14   52.7   0.0    2.8  2  PP-binding       Phosphopantetheine attachment site
    2.7e-22   80.2   0.2    1.5e-21   77.8   0.2    2.5  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
      3e-18   66.0   0.0    1.1e-07   31.5   0.0    3.1  3  adh_short        short chain dehydrogenase
    1.1e-15   57.7   2.1    4.1e-15   55.9   0.1    3.1  3  ADH_zinc_N       Zinc-binding dehydrogenase
    7.5e-14   51.7   2.7    3.2e-06   26.7   0.2    2.7  2  Thiolase_N       Thiolase, N-terminal domain
    1.2e-09   37.6   6.9    3.6e-09   36.1   6.9    2.0  1  Docking          Erythronolide synthase docking
    3.5e-09   36.5   0.4    0.00059   19.4   0.0    2.4  2  Epimerase        NAD dependent epimerase/dehydratase family
    2.6e-06   26.8   0.0     0.0088   15.2   0.0    2.2  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
    1.8e-05   24.6   6.4       0.41   10.3   0.0    4.7  4  SAT              Starter unit:ACP transacylase in aflatoxin b
    9.1e-05   22.0   0.0       0.28   10.5   0.0    2.3  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    0.00015   21.6   0.0    0.00033   20.5   0.0    1.6  1  ADH_N            Alcohol dehydrogenase GroES-like domain
     0.0025   17.4   3.2       0.71    9.4   0.2    2.4  2  NmrA             NmrA-like family
  ------ inclusion threshold ------
      0.072   12.1   0.0        1.8    7.5   0.0    2.1  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
       0.16   11.1   4.0        1.2    8.3   0.3    2.5  2  NAD_binding_4    Male sterility protein
        0.2   11.5   7.2        4.4    7.2   0.1    3.7  3  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
       0.22   11.2   2.1        3.9    7.2   0.2    2.7  2  GBP_PSP          Paralytic/GBP/PSP peptide
        3.4    6.7   4.9        1.9    7.5   0.2    2.8  3  RmlD_sub_bind    RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.2   0.2   2.8e-95   2.2e-92       2     253 .]      34     284 ..      33     284 .. 0.97
   2 ?   -2.5   0.1       3.8     3e+03      84     124 ..     632     672 ..     627     687 .. 0.76
   3 !  300.1   0.1   1.8e-92   1.4e-89       2     253 .]    2118    2368 ..    2117    2368 .. 0.97
   4 ?   -0.3   0.1      0.83   6.5e+02      95     153 ..    2404    2463 ..    2401    2482 .. 0.69

  Alignments for each domain:
  == domain 1  score: 309.2 bits;  conditional E-value: 2.8e-95
                    --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllle 94 
                    ep+a+v mg+rfPgg++ +e++welL++ rda++++p+dr wd ++ ydp+++a gk++t+ g+fl+ +d+fd+effgisprea amdpqqr lle
     KIR61147.1  34 EPIAVVSMGCRFPGGVGsPEQLWELLVAERDAVTRVPTDRgWDIEDIYDPDPDAVGKSYTREGAFLAdADRFDAEFFGISPREALAMDPQQRQLLE 129
                    89********************************************************************************************** PP

                    HHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt  95 aawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslr 190
                    ++we+le+ag++p++l+g+r+gvf+G+  ++y+ +++l     +v++++  +g+  a++++gri+ya+gl+Gp+vtvdtACs+s+va+h+av++lr
     KIR61147.1 130 VTWETLERAGIPPARLRGTRTGVFVGSIGQTYN-MSLLPAMA-QVEGYV-LTGT-QASIMSGRIAYAYGLEGPAVTVDTACSTSAVALHLAVRALR 221
                    ****************************99995.56666555.59****.9999.***************************************** PP

                    TTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    +ge+d alaGGv+++ t   +  fs+++ l+pdgrck+f+++adG  +GEGvG+++L rl+da
     KIR61147.1 222 NGECDRALAGGVTVMATSAWFTEFSRQRGLAPDGRCKPFAAAADGIGWGEGVGMLMLRRLSDA 284
                    *************************************************************98 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.8
                    TS-HHHHHHHHHHHHHHHHHTS-HHTCTTGGEEEEEEESST CS
  ketoacyl-synt  84 amdpqqrllleaawealedagltpeeldgsrvgvfiGvgag 124
                     + p+   +++  ++ ++ ag+ p+++ g + g ++++ ++
     KIR61147.1 632 VVQPALFAVMVSLARVWQAAGIRPDAVVGHSQGEIAAAHIA 672
                    5666677788999999999***9999999888877776655 PP

  == domain 3  score: 300.1 bits;  conditional E-value: 1.8e-92
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     +p++ivGm++rfPgg   ++++w+++++g++++s++p+dr wd d+l++p+++ ag++++++ggfld + +fd+effg+sprea  +dpqqr+l
     KIR61147.1 2118 DPIVIVGMACRFPGGIRsPRDLWDVVVSGGEHVSTFPQDRgWDLDRLFHPDPDHAGTTYVDRGGFLDgAGHFDAEFFGMSPREALGTDPQQRVL 2211
                     59*************999**************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     le+awe+le+ag+ pe+l++sr+gvf+G+++  y + a+   ++  v+++   +ga +++v++gri+yalgl+Gp+vtvdtACsSslv +h+av
     KIR61147.1 2212 LETAWETLERAGIRPESLRHSRTGVFVGMTSYGYPGGASRA-AE-AVEGYL-LTGA-SSSVASGRIAYALGLEGPAVTVDTACSSSLVSLHLAV 2301
                     **********************************7655544.44.599***.9**9.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     q+lr+ge+d+alaGG++++ +p+ ++gfs+++ l+pdg+ck+f+++adG+v++EGvG+++++rl+da
     KIR61147.1 2302 QALRNGECDLALAGGATVMPSPSVFVGFSRQRGLAPDGHCKPFAAAADGTVFSEGVGLLLVERLSDA 2368
                     *****************************************************************98 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.83
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTH CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgsevkaspkavgavlanv 153 
                     + ++al +agl  +++d  +   +g ++G  ++ +a +a++  +  ++++sp ++g+v +n+
     KIR61147.1 2404 VIDQALTNAGLGHADVDAVEahgTGTTLGDPIEAQALIATYG-RA-RSDDSPLWIGSVKSNI 2463
                     6789*******9999977666679999999999775444444.44.4788888887744443 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.2   0.0     2e-87   1.6e-84       1     318 [.     571     890 ..     571     891 .. 0.98
   2 !  302.3   0.9   6.1e-93   4.8e-90       2     317 ..    2665    2980 ..    2664    2982 .. 0.97

  Alignments for each domain:
  == domain 1  score: 284.2 bits;  conditional E-value: 2e-87
                    EEEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T.TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHHH CS
  Acyl_transf_1   1 vfvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe.glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGEl 95 
                    vfvf+GqGsQw  M++eL ++  +f++ +++++ a+++++++s+ldvl   p  + ld++++vqpaL+av+++la +++++G rp+avvGHS+GE+
     KIR61147.1 571 VFVFPGQGSQWDRMAVELSESCTVFREHLRACADALAPHTDWSLLDVLHGVPGaPALDRVDVVQPALFAVMVSLARVWQAAGIRPDAVVGHSQGEI 666
                    8************************************************9997579**************************************** PP

                    HHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH....TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECCC CS
  Acyl_transf_1  96 Aaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklr..cqddvvgavansprrvvisgsqealrelvervskegvgalvenvn 187
                    Aaa+ agal +  a+  v+lrsrl   lag g+ma++ l  a +e  lr    d ++ a++n p+++v++g++++l++lv+ ++++gv+a+ + v+
     KIR61147.1 667 AAAHIAGALPLDAAATIVALRSRLLLDLAGTGGMASLPLpaADVESLLRhpGRDGLSIAAVNAPGSTVVAGPPDELHDLVRACEADGVQARLIPVD 762
                    ****************************************9778888887799******************************************* PP

                    EECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCHHGG CS
  Acyl_transf_1 188 vavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlksae 283
                    +a+h ++v+++++ l +ala i+p ++ +a++s++++ +++++ l+a yw++nlr+pv  ++av++++++++  f+e+spH++l+  l++t++  +
     KIR61147.1 763 YASHTAAVEPLRERLEAALAGITPVPADIAFYSTVTAAPADTGSLDATYWYRNLRQPVALEPAVRALLADGHTLFIEVSPHPVLTTPLQETID--D 856
                    *********************************************************************************************..8 PP

                    G-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT-H CS
  Acyl_transf_1 284 dvksatlvGklkrdltdflvtflyllakahltgse 318
                     + +at  G+l+rd+++   ++l +la+ah+ g+ 
     KIR61147.1 857 SGTPATAHGTLRRDHGG-PDRLLHSLAQAHVHGAT 890
                    9****************.*************9986 PP

  == domain 2  score: 302.3 bits;  conditional E-value: 6.1e-93
                     EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T.TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHH CS
  Acyl_transf_1    2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe.glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGE 94  
                      vf+GqGsQw GM+++Ll++s++fa+ +++++ea+  ++++s+ldvlr +p    l ++++vqpaL+av+++la+l++++Gv p+avvGHS+GE
     KIR61147.1 2665 LVFPGQGSQWTGMALDLLEQSPVFAEHLRACAEAIDRHTDWSLLDVLRGAPGsADLGRVDVVQPALFAVMTSLAALWRAAGVVPDAVVGHSQGE 2758
                     59*************************************************745799************************************* PP

                     HHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS.HHHHHHH....TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECC CS
  Acyl_transf_1   95 lAaavvagalsseeallavvlrsrlmmqlagpgdmaavelaeeeeklr..cqddvvgavansprrvvisgsqealrelvervskegvgalvenv 186 
                     +Aaa+vagals+ +a+++v+lrsr+ +++ag g+ma+v+l++ee+ +r     dv +a++n+p+  v++g   a+ ++v+r++++gv+a+ + v
     KIR61147.1 2759 IAAAYVAGALSLDDAARVVALRSRILTRIAGLGAMASVSLSAEETTARlpEAGDVHLAAVNGPHDCVVAGDVTAVGDFVARCAADGVRARLIPV 2852
                     ****************************************7777777755888***************************************** PP

                     CEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCH CS
  Acyl_transf_1  187 nvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlk 280 
                     ++a+hsp vdai+ +l+ al  + pr  +v+++s+++  + +++el+a yw +nlr +vrfa+a  ++++ +++ fve spH++l+ ++e+ l+
     KIR61147.1 2853 DYASHSPHVDAIRAELLDALGPVQPRAGTVPFYSTLTGAPVDTTELDAGYWFRNLRHTVRFAAATEALLDAGHHLFVEASPHPVLAVGIEQSLE 2946
                     ********************************************************************************************** PP

                     HGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT- CS
  Acyl_transf_1  281 saedvksatlvGklkrdltdflvtflyllakahltgs 317 
                         + + ++ G+l+rd+++ ++++l++la+ah+ g+
     KIR61147.1 2947 --RAGRTGQVGGTLRRDQDG-AREVLAALARAHVHGA 2980
                     ..799***************.*************986 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.1   8.5e+02      39      80 ..     740     782 ..     697     790 .. 0.71
   2 !  188.6   0.1   1.2e-58   9.1e-56       1     179 [.    1743    1921 ..    1743    1922 .. 0.97
   3 !  199.6   0.1     5e-62   3.9e-59       1     179 [.    3510    3688 ..    3510    3689 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHTT-EEEE----TT-H.HHHHHHHHHHHHHSS CS
          KR  39 edskaliaelealgaevevvaaDvsdk.davealleeikaeep 80 
                 ++ ++l++++ea g++ +++++D +++ +ave l e+++a  +
  KIR61147.1 740 DELHDLVRACEADGVQARLIPVDYASHtAAVEPLRERLEAALA 782
                 4455699****************76551667777777664443 PP

  == domain 2  score: 188.6 bits;  conditional E-value: 1.2e-58
                  SEEEEETTTSHHHHHHHHHHH.HHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR    1 gtylitGGlGgLGlelarwla.ekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96  
                  gt+l+tGG+G LG ++ r+l+ ++g rhl+l+sR++ + + +++l ael+ lga+v v+a+Dv+d++++++ll+ei  e+ p++ v+h+Agv++d++
  KIR61147.1 1743 GTVLVTGGTGTLGAAVGRHLVtAHGVRHLLLVSRRGIEADGATRLQAELAGLGADVVVRACDVADREDLRRLLDEIPPEH-PLTAVVHSAGVTDDAA 1838
                  89******************94589**********999999999********************************9555.**************** PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  ++ ++  +l+ vl+pK ++aw+Lhel+++++l  fvlfSS+ag+lg++gqanYaa+N++lDala++r+++glpavs++wglw+
  KIR61147.1 1839 VTVLEPWQLDPVLRPKADAAWQLHELTAEHDLSAFVLFSSLAGTLGNPGQANYAAGNTYLDALAAHRHARGLPAVSLAWGLWQ 1921
                  **********************************************************************************7 PP

  == domain 3  score: 199.6 bits;  conditional E-value: 5e-62
                  SEEEEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR    1 gtylitGGlGgLGlelarwlaekg.arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96  
                  gt+litGG+G LG  +ar+l+  +   hlvl+sR +   + + +l +el+alga+v+v+a+D +d++a++++l++i  e+ p++Gv+haAg+l+d++
  KIR61147.1 3510 GTVLITGGTGTLGGLVARHLVTAHrVGHLVLVSRGGLDAPGAPELATELSALGASVTVAACDTTDRAALARVLSAIPGEH-PLTGVVHAAGTLDDAT 3605
                  89*******************988799********9999999**********************************9776.**************** PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  + ++t e+l++vl pKv++awnLhel++d +l  fvlfSS+ag+lg++gqanYaaaN+flD+la++r+++glpavs++wg+w+
  KIR61147.1 3606 VPSLTPERLDTVLGPKVDAAWNLHELTRDLDLSAFVLFSSAAGVLGAPGQANYAAANSFLDGLARHRHALGLPAVSLAWGPWQ 3688
                  **********************************************************************************8 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.0   6.5   1.1e-53   8.5e-51       1     295 [.     938    1211 ..     938    1214 .. 0.89
   2 !  185.7   6.4   1.4e-57   1.1e-54       1     292 [.    3028    3299 ..    3028    3303 .. 0.89

  Alignments for each domain:
  == domain 1  score: 173.0 bits;  conditional E-value: 1.1e-53
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hpll ++   a++  ++f+ rl+l+ +pwL+DH+v+g+v++P+++ +e+ l Aa ++  +    +l +++++++lv++e ++v++q+ + +++++  
  KIR61147.1  938 HPLLAAETMLADGGGHLFSGRLSLRTHPWLADHAVHGEVIVPATALVELGLHAAYRVGCG----QLAELTLQTPLVVAERDAVQIQVLVGAAAADGE 1030
                  9***9999999***********************************************55....5*********************99999865544 PP

                  ....EEEEEEE-SS-TT......EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE CS
       PS-DH   98 rawvefeifSregggee.....wtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealael 189 
                       ++i+Sr++++++     w+ hatG +  + +++         + + ++pa +++++ ae+Y rl+++gl yGp F+glra+w   g+ +ae+
  KIR61147.1 1031 ---RPVTIHSRAEHDDDaddapWVCHATGLLLPQVAPT-------PAPVEVWPPAGATRLDTAEVYPRLSDIGLAYGPVFRGLRAAWGLGGDLYAEV 1117
                  ...59*********99999*************655544.......55667789999999************************************** PP

                  ---GGGSSTTTT-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEESE CS
       PS-DH  190 rlpeelaggesayvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeiegl 286 
                  +lp++++++   ++lhPal Daal++   al +  e++++++lP+a+  ++v+     +   ++v+ r e+ +    +++++++d++G +va++e l
  KIR61147.1 1118 ELPDDVDAR--GFALHPALFDAALHAT--AL-SGGEHDGRTRLPFAWRGVSVHA---VGATAVRVRLRPEGPD----TVSVSVMDQSGLPVASVEAL 1202
                  *****9965..4*************77..34.568******************7...3333455555555555....78999*************** PP

                  EEEE--XXX CS
       PS-DH  287 rlrrverea 295 
                  ++r+++++ 
  KIR61147.1 1203 TVRPLSAGR 1211
                  *****9875 PP

  == domain 2  score: 185.7 bits;  conditional E-value: 1.4e-57
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hpl+ + ++ a+d +++f  r++l+ +pwL+DHrv++ vv+Pg++++e+al Aa+ +     + ++ ++++l++lvlpe+++v++ql++ +ee+g++
  KIR61147.1 3028 HPLIAAGLSVAADGQRIFTGRVSLRTHPWLADHRVEDVVVVPGTAFVELALYAAHLAG----GAAVDELTLLAPLVLPEQGGVRLQLVVAAEENGTQ 3120
                  99999999999*******************************************9999....456*******************************9 PP

                  ....EEEEEEE-SS-TT....EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE-- CS
       PS-DH   98 rawvefeifSregggee...wtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealaelrl 191 
                      + ++++r +++++   wt+ha+Gt+++++ +a     +e l  ++++p+ +++++ +++Y+r+ a+g  yGp+Fqglra+wr  +e  ae++l
  KIR61147.1 3121 ----QLTVHARPESEDDdadWTLHASGTLTATAPPA-----AEGL--TAWPPPGAERLDLDAVYDRFLAKGQLYGPAFQGLRAAWRHGDELCAEVTL 3206
                  ....5555555555555556**********765444.....4555..555666677799999*********************************** PP

                  -GGGSSTTTT-SB-HHHHHHHHHHG..GG.----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEESEE CS
       PS-DH  192 peelaggesayvlhPallDaalQllaaal.saeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieglr 287 
                  pee++ +   + +hPallDaal++l+a    a++ + +aa lP+++  l++     + g+ l+v++r ++++    +++l+l d++Gr+  +i+ lr
  KIR61147.1 3207 PEEVDVEG--FGVHPALLDAALHTLMADPaRAREAAGTAALLPFSWTGLSLEA---TVGRALRVRIRSSADQ----AVSLDLADAEGRPAGRISALR 3294
                  ****9665..*************88776688899999**************96...88999*****998776....799****************** PP

                  EEE-- CS
       PS-DH  288 lrrve 292 
                  +r+++
  KIR61147.1 3295 MRPLR 3299
                  **986 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.2   0.0   1.1e-45   8.2e-43       1     117 [.     292     409 ..     292     410 .. 0.99
   2 !  141.1   1.2   1.9e-44   1.5e-41       1     117 [.    2376    2493 ..    2376    2494 .. 0.98

  Alignments for each domain:
  == domain 1  score: 145.2 bits;  conditional E-value: 1.1e-45
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-GGG CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHleaA 93 
                      +av++gsavnsdga+n+ltapng +q+r+ie ala+a+++p d+d veahgtgt+lgDpiE++al +++g+++   qpl++gSvKsniGH ++A
       KIR61147.1 292 LAVLRGSAVNSDGASNGLTAPNGPSQQRVIELALADARLTPGDIDAVEAHGTGTTLGDPIEAQALLATYGQDRPtGQPLWLGSVKSNIGHPQGA 385
                      69**********************************************************************9999****************** PP

                      HHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  94 aGvaelikvvlalkhgvipptlnl 117
                       Gva++ik+vlal+hg +p tl++
       KIR61147.1 386 GGVAGVIKMVLALQHGLLPRTLHI 409
                      ***********************8 PP

  == domain 2  score: 141.1 bits;  conditional E-value: 1.9e-44
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       +av++gsavnsdg +n+ltapng aq+r+i +al +ag+  +dvd veahgtgt+lgDpiE++al +++g+ ++ ++pl++gSvKsniGH++
       KIR61147.1 2376 LAVVRGSAVNSDGTSNGLTAPNGPAQQRVIDQALTNAGLGHADVDAVEAHGTGTTLGDPIEAQALIATYGRARSdDSPLWIGSVKSNIGHTQ 2467
                       69*********************************************************************999999*************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                        AaGva++ik+v+a++hg +p+ l++
       KIR61147.1 2468 QAAGVAGVIKMVQAIEHGLLPAVLHV 2493
                       ************************98 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   9.3e-19   7.2e-16       1     112 []     412     537 ..     412     537 .. 0.82
   2 !   57.3   0.0   2.4e-18   1.8e-15       1     111 [.    2496    2627 ..    2496    2628 .. 0.92

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 9.3e-19
  KAsynt_C_assoc   1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk.........eeslprLlvlsgrteeaveallekle 82 
                     P p+++ +++g++ +  e+ pwp++     ++v+sfG+GG+n+H++L++++ + +++ ++          +     ++ls+r+eea+++++++l+
      KIR61147.1 412 PTPHVN-WDSGQVSLLGEARPWPETGrprrAAVSSFGVGGTNAHLVLEAAPPRPAPQPAPdraapagalLTGGTLPWLLSARSEEALRRQAARLR 505
                     99****.***************99888999********************96666665555778888886666677889**************** PP

  KAsynt_C_assoc  83 ehlldaellsl..lneilseeisrlpyRGyav 112
                     e    +++ +l  +  +l+ e++++++R  +v
      KIR61147.1 506 EFATARPDDRLadIGHALAFEREHHEHRTAVV 537
                     **7766655550055555666666****8876 PP

  == domain 2  score: 57.3 bits;  conditional E-value: 2.4e-18
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk................eeslprLlvlsgrteea 73  
                      P p+++ +++  + V te+ pwp++     +gv++fG++G+n+HviL++++ ++ ++++                  +++p  +++s+rt++a
      KIR61147.1 2496 PTPHVE-WADSGVAVLTETAPWPQTGrprrAGVSAFGISGTNAHVILEQPEDADGRRAPApevaatpaalspgrpgGDPTPLAWLVSARTPAA 2587
                      99****.***************99888999*********************776666666678888999999**999**************** PP

  KAsynt_C_assoc   74 veallekleehlldaellsllneilseeisr..lpyRGya 111 
                      ++++++ ++++ ++++  + ++ + s +++r  +++R+ +
      KIR61147.1 2588 LRQQAAGIASYVREHDATRDADVAWSLATARttFDHRAVV 2627
                      ********************99999999998889999876 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   1.5e-13   1.2e-10       3      67 .]    2030    2095 ..    2026    2095 .. 0.90
   2 !   52.7   0.0   5.1e-17     4e-14       3      67 .]    3794    3859 ..    3792    3859 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 1.5e-13
  PP-binding    3 lrelvaevlgvplee.idpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +r+ v  vl+ p+ + idp  ++ + G+DSl+avel ++l++e g+++p + +f++p  a+la +l
  KIR61147.1 2030 VRDNVGAVLNHPAPQtIDPRRPFQEIGFDSLTAVELRNRLNAETGLRLPATLIFDYPHAAALAGHL 2095
                  67777788888655559**********************************************997 PP

  == domain 2  score: 52.7 bits;  conditional E-value: 5.1e-17
  PP-binding    3 lrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  lr  +a vlg  ++ +i+ d ++ dlG+DSl+a+el ++l+++ g+++p + +f++pt+++la+++
  KIR61147.1 3794 LRGHLAAVLGHgSPGDIATDRPFQDLGFDSLTALELRNRLRRATGLPLPATLVFDYPTVGALADHV 3859
                  7888999***9989999***********************************************97 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.2     2e-24   1.5e-21       2     133 .]    1600    1733 ..    1599    1733 .. 0.85

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 2e-24
                    T-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-...-HHHH CS
  ADH_zinc_N_2    2 GAdevidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas..aqadil 90  
                     A +v d+rt +fe    aatgg+g+Dvvld+++ge +++asl+++p gGr++++g++    +++++ + ++ ++v y  + +++++  + +++l
    KIR61147.1 1600 DARHVADSRTLAFEetfrAATGGDGFDVVLDSLAGE-FVDASLRLMPRGGRFLELGKT--DVRDPAEVA-ARHPGVAYRAFETVESGpdHVQRML 1690
                    689*******************************99.66*******888*******73..333333333.345666666666666669955555* PP

                    HHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2   91 eelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133 
                    ++l++l+++G+l+p +   f+  +a++A+r++ ++r++GK+Vl
    KIR61147.1 1691 ADLGRLFAQGALTPLPVTAFDVRQAPQAFRLMSQARHTGKLVL 1733
                    *****************9************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.1   3.2e+03      30      64 ..     735     769 ..     730     784 .. 0.74
   2 !   31.5   0.0   1.4e-10   1.1e-07       2     152 ..    1744    1894 ..    1743    1907 .. 0.87
   3 !   30.8   0.0   2.4e-10   1.9e-07       2     161 ..    3511    3670 ..    3510    3675 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.1
                 EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHH CS
   adh_short  30 vdrseekleevakelkeegakalaiqvDvtdreev 64 
                 v+  +++l+ ++  ++++g +a  i+vD ++++++
  KIR61147.1 735 VAGPPDELHDLVRACEADGVQARLIPVDYASHTAA 769
                 5566789999******************9955443 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 1.4e-10
                  EEEEESTTSHHHHHHHHHHHH.TT-EEEE.EESC...HHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    2 vvlvtGassGIGraiakelak.eGakvvv.vdrs...eekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                  +vlvtG+++ +G a+ ++l++  G+++++ v+r+   ++ + ++ +el  +ga++++ ++Dv+dre++++l++++  ++ +l ++v+ AG+t ++++
  KIR61147.1 1744 TVLVTGGTGTLGAAVGRHLVTaHGVRHLLlVSRRgieADGATRLQAELAGLGADVVVRACDVADREDLRRLLDEIPPEH-PLTAVVHSAGVTDDAAV 1839
                  79****************986269999887777622145566777777777************************8885.8**************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAs 152 
                    l+  + + v+     ++ +l ++ +++       + v  sS ag  +++g+a Y+A 
  KIR61147.1 1840 TVLEPWQLDPVLRPKADAAWQLHELTAEH----DLSAFVLFSSLAGTLGNPGQANYAAG 1894
                  ******************99999998888....56789999****************96 PP

  == domain 3  score: 30.8 bits;  conditional E-value: 2.4e-10
                  EEEEESTTSHHHHHHHHHHHHT...T-EEEE..EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    2 vvlvtGassGIGraiakelake...Gakvvv..vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                  +vl+tG+++ +G  +a++l+++   G  v+v   +  +  + e+a+el ++ga+++++++D tdr+++ ++++++  ++ +l  +v+ AG   ++++
  KIR61147.1 3511 TVLITGGTGTLGGLVARHLVTAhrvGHLVLVsrGGLDAPGAPELATELSALGASVTVAACDTTDRAALARVLSAIPGEH-PLTGVVHAAGTLDDATV 3606
                  69*****************9873324445443222345567799*******************************8775.8**************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltr 161 
                   +l+ e+ + v+   + ++ +l ++  +  +     + v  sS ag  + +g+a Y+A+  +++gl+r
  KIR61147.1 3607 PSLTPERLDTVLGPKVDAAWNLHELTRDL-D---LSAFVLFSSAAGVLGAPGQANYAAANSFLDGLAR 3670
                  *******************9998775555.4...6789999**********************99987 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.1   5.2e-18   4.1e-15       1      91 [.    1566    1658 ..    1566    1677 .. 0.86
   2 ?   -3.2   0.0       9.8   7.6e+03      29      78 ..    1790    1841 ..    1782    1844 .. 0.59
   3 ?   -1.6   0.1       3.1   2.4e+03      67      91 ..    3494    3519 ..    3491    3535 .. 0.68

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 5.2e-18
                  HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT..ESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC..T CS
  ADH_zinc_N    1 gvGlaavqlAkalGaeviavdsseeklelakklG..adevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg..g 91  
                  gvG+aavqlA+++Gae++a++s+++    +  +G  a +v ++ ++  ++e  +++tgg+g+dvv++ ++ g+ ++a+l+l+ +gGr+   G   +
  KIR61147.1 1566 GVGMAAVQLARHWGAETYATASTPK-WGTLHAMGfdARHVADS-RTlAFEETFRAATGGDGFDVVLDSLA-GEFVDASLRLMPRGGRFLELGKtdV 1658
                  9***********************7.4444444433999***9.888***********************.*****************99996433 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 9.8
                  HHHHTTESEEEET.....TTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHC CS
  ADH_zinc_N   29 lakklGadeviny.....keadlverikeltggegvdvvfecvGsgatleaalkl 78  
                   ++ lGad+v+ +     +e dl   + e+  +e +  ++ +++ g t +aa+++
  KIR61147.1 1790 ELAGLGADVVVRAcdvadRE-DLRRLLDEIP-PEHPLTAVVHSA-GVTDDAAVTV 1841
                  45568999999997775322.6666666666.444444444444.4555555555 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3.1
                  CSHHHHHHHHHCEEEEEEEEECSC.T CS
  ADH_zinc_N   67 GsgatleaalkllkpgGrlvvvGg.g 91  
                  G  ++ +a  ++ +pgG++ + Gg g
  KIR61147.1 3494 GGADARPALAAAFRPGGTVLITGGtG 3519
                  5455566677789**********842 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.2   2.4e-08   1.9e-05      51     118 ..     174     239 ..     170     253 .. 0.92
   2 !   26.7   0.2   4.2e-09   3.2e-06      55     115 ..    2262    2320 ..    2250    2333 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.4e-08
                 EHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS CS
  Thiolase_N  51 GnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsna 118
                 G vl++ + ++++  +a + g+  e pavtv+ +cs ++ a++la+++++ ge+d ++agGv  m ++
  KIR61147.1 174 GYVLTGTQASIMSGRIAYAYGL--EGPAVTVDTACSTSAVALHLAVRALRNGECDRALAGGVTVMATS 239
                 789999999999999999***9..99************************************999875 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 4.2e-09
                  CTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEES CS
  Thiolase_N   55 qagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsm 115 
                  ++++ +  +  +a ++g+  e pavtv+ +csS+l +++la+q+++ ge+d ++agG+  m
  KIR61147.1 2262 TGASSSVASGRIAYALGL--EGPAVTVDTACSSSLVSLHLAVQALRNGECDLALAGGATVM 2320
                  555555566677888888..99***********************************9877 PP

>> Docking  Erythronolide synthase docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   6.9   4.7e-12   3.6e-09       1      26 []       2      27 ..       2      27 .. 0.98

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 4.7e-12
     Docking  1 anEeKLRdYLKRvTaDLrqtRrRLrE 26
                anE KLR+YLKR+T+ Lrq+RrRL+E
  KIR61147.1  2 ANEAKLREYLKRTTTGLRQARRRLQE 27
                8************************9 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   7.6e-07   0.00059       1     115 [.    1745    1878 ..    1745    1897 .. 0.75
   2 !   15.0   0.0   1.6e-05     0.013       1     117 [.    3512    3647 ..    3512    3662 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.6e-07
                  EEEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHHT-S....EEEE--S.---HHHHH CS
   Epimerase    1 ilVtGatGfiGsalvkallekg.ye.vigldrlssasntarledl.........elveldltdrsalerlfkeeqpd....avihlAa.vggvaass 81  
                  +lVtG+tG +G+a+ ++l +++ ++ ++ ++r+  +   a + ++          +  +d+ dr++l+rl++e  p+    av+h A+   + a+++
  KIR61147.1 1745 VLVTGGTGTLGAAVGRHLVTAHgVRhLLLVSRRGIEADGATRLQAelaglgadvVVRACDVADREDLRRLLDEIPPEhpltAVVHSAGvTDDAAVTV 1841
                  79***************998777555777777754433333322367******9999**************986664222289**999777777788 PP

                  HSHHH...HHHHHTHHHHHHHHHHHHHTCTEEEEEEE CS
   Epimerase   82 edpad...fieknlqgtlnlleaarkagvkrllflsS 115 
                   +p +   +++  +  +++l e   ++++  ++ +sS
  KIR61147.1 1842 LEPWQldpVLRPKADAAWQLHELTAEHDLSAFVLFSS 1878
                  8776522257788888888888888888888888887 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.6e-05
                  EEEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHH....HHT-SEEEE--S.---HHHH CS
   Epimerase    1 ilVtGatGfiGsalvkallekg..yevigldrlssasntarledl..........elveldltdrsalerlfk....eeqpdavihlAa.vggvaas 80  
                  +l+tG+tG +G  ++++l +++   +++ ++r   + + ++ e +          ++  +d tdr+al+r+++    e+  + v+h+A+   +  + 
  KIR61147.1 3512 VLITGGTGTLGGLVARHLVTAHrvGHLVLVSRGGLDAP-GAPELAtelsalgasvTVAACDTTDRAALARVLSaipgEHPLTGVVHAAGtLDDATVP 3607
                  79*****************9997533555555533222.222222467******************99999874444678999****9987665555 PP

                  HHSHH...HHHHHHTHHHHHHHHHHHHHTCTEEEEEEEGG CS
   Epimerase   81 sedpa...dfieknlqgtlnlleaarkagvkrllflsSse 117 
                  s +p+    ++   +  ++nl e  r+ ++  ++ +sS++
  KIR61147.1 3608 SLTPErldTVLGPKVDAAWNLHELTRDLDLSAFVLFSSAA 3647
                  555541113455899999*********9999999999953 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-05    0.0088       1      86 [.    1745    1832 ..    1745    1878 .. 0.80
   2 !    9.5   0.0   0.00062      0.48       1     127 [.    3512    3644 ..    3512    3650 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-05
                       EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-S....EEEE--- CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvd....vvfhaAA 86  
                       vlvtG++G++G ++ r++++   +++++l++r   + +  ++ l++el+   l +++v+  +dv+d+e l+++l+e+ ++    +v+h+A 
       KIR61147.1 1745 VLVTGGTGTLGAAVGRHLVTAhGVRHLLLVSRRGIEADGATR-LQAELAG--LGADVVVRACDVADREDLRRLLDEIPPEhpltAVVHSAG 1832
                       89***************998769*********9999887665.4455555..777888999**********99997655411116777775 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00062
                       EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT......T-SEEEE---- CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekale....elkvdvvfhaAAl 87  
                       vl+tG++G++G  + r++++  ++ +++l++r  l      + l +el++  l +++++  +d +d++ l+++l+    e+    v+haA +
       KIR61147.1 3512 VLITGGTGTLGGLVARHLVTAhRVGHLVLVSRGGLDAPGAPE-LATELSA--LGASVTVAACDTTDRAALARVLSaipgEHPLTGVVHAAGT 3600
                       89***************988779*********9888766554.3344444..5556667899999999999998722224567789999976 PP

                       ...--HHHHHHSHHHHH.HHHHHHHHHHHHHHHHTT-SEEEEEE CS
  Polysacc_synt_2   88 ...KhVPlveenpleai.ktNvlgtenvieaaieagvkkvvliS 127 
                            VP +  + l+++    v ++ n+ e + + + +++vl S
       KIR61147.1 3601 lddATVPSLTPERLDTVlGPKVDAAWNLHELTRDLDLSAFVLFS 3644
                       22245776665555443145666777777777777777777766 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.3      0.12        96     105     123 ..     656     674 ..     631     686 .. 0.79
   2 !   10.3   0.0   0.00053      0.41     194     239 ..     720     765 ..     708     766 .. 0.83
   3 ?    5.7   1.4     0.013        11     105     143 ..    2749    2787 ..    2725    2804 .. 0.78
   4 ?    4.4   0.0     0.035        27     186     239 ..    2803    2856 ..    2790    2857 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.12
         SAT 105 tylvGlCtGllaAaavacs 123
                   +vG+++G +aAa +a +
  KIR61147.1 656 DAVVGHSQGEIAAAHIAGA 674
                 479************9977 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00053
         SAT 194 srvyisavssss.vtisGpPstleallksskakkkkkksklpiyapy 239
                   + i+av++++ ++++GpP+ l++l++ ++a+  + +  +p+  + 
  KIR61147.1 720 DGLSIAAVNAPGsTVVAGPPDELHDLVRACEADGVQAR-LIPVDYAS 765
                 5678*****9999*****************99998876.68776555 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.013
         SAT  105 tylvGlCtGllaAaavacskslseLvplaveavrvafrl 143 
                    +vG+++G +aAa va + sl++  ++     r++ r+
  KIR61147.1 2749 DAVVGHSQGEIAAAYVAGALSLDDAARVVALRSRILTRI 2787
                  479******************999777766666666665 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.035
         SAT  186 eekglppasrvyisavssss.vtisGpPstleallksskakkkkkksklpiyapy 239 
                   +  lp+a  v+ +av++++ ++++G  +++ +++++++a+  + +  +p+  + 
  KIR61147.1 2803 TTARLPEAGDVHLAAVNGPHdCVVAGDVTAVGDFVARCAADGVRAR-LIPVDYAS 2856
                  567789999********9999*****************99999887.78876655 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00036      0.28       1      77 [.    1746    1821 ..    1746    1833 .. 0.84
   2 !    9.2   0.0   0.00094      0.73       1      74 [.    3513    3585 ..    3513    3600 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00036
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-S CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpd 77  
                     L+TG++G  G+ + ++L++ +   h +       +++   +l+  + + l  ++ +  +D+ D++ l+rll+e+ p+
     KIR61147.1 1746 LVTGGTGTLGAAVGRHLVTAHGVRHLLLVSRRGIEADGATRLQA-ELAGLGADVVVRACDVADREDLRRLLDEIPPE 1821
                     9*****************99777777777777778787778765.4567889********************99775 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00094
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev 74  
                     LiTG++G  G  +a++L++ +   h +      +++    +la++  + l  ++++  +D tD+++l r+l+ +
     KIR61147.1 3513 LITGGTGTLGGLVARHLVTAHRVGHLVLVSRGGLDAPGAPELATEL-SALGASVTVAACDTTDRAALARVLSAI 3585
                     9******************988888877777777777777887655.56889******************9865 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   4.3e-07   0.00033       2      60 ..    1447    1501 ..    1446    1508 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.3e-07
                  TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEE CS
       ADH_N    2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVv 60  
                  gev++ v+aag++  D+ i+ g      + +  +G E++G+v ++g +v++l+ Gd V+
  KIR61147.1 1447 GEVRVAVRAAGMNFRDVLIALG----MYPGEALIGSEAAGVVLDTGAGVTDLAPGDAVM 1501
                  89*******************9....5778889************************98 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.2     0.002       1.6       1      63 [.    1745    1816 ..    1745    1819 .. 0.78
   2 !    9.4   0.2   0.00091      0.71       1      63 [.    3512    3583 ..    3512    3587 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.002
                  EEESSTTSHHHHHHHHHHHH.HT-EEEEEES-S......-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHT CS
        NmrA    1 IlviGaTGrqGksvvrallk.aghkvralvRdt......kselakslkeaGvelv..kgdlddkeslvealk 63  
                  +lv+G+TG +G++v r+l+  +g +   lv          + l ++l+  G+ +v  + d+ d+e l+++l+
  KIR61147.1 1745 VLVTGGTGTLGAAVGRHLVTaHGVRHLLLVSRRgieadgATRLQAELAGLGADVVvrACDVADREDLRRLLD 1816
                  79***************9885566555565444677766667777888899999877889999999998876 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00091
                  EEESSTTSHHHHHHHHHHHH...HT-EEEEEES-S........-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHT CS
        NmrA    1 IlviGaTGrqGksvvrallk...aghkvralvRdt........kselakslkeaGvelv..kgdlddkeslvealk 63  
                  +l++G+TG +G+ v+r+l+    +gh    lv  +          ela++l++ G+ +   + d+ d++ l+++l+
  KIR61147.1 3512 VLITGGTGTLGGLVARHLVTahrVGH----LVLVSrggldapgAPELATELSALGASVTvaACDTTDRAALARVLS 3583
                  79***************998444444....4443344579999999*******99865335889999999998875 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0023       1.8       1      78 [.    1746    1835 ..    1746    1844 .. 0.73
   2 ?    2.2   0.0     0.095        74       1      67 [.    3513    3585 ..    3513    3657 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0023
   3Beta_HSD    1 vvtGgaGFlGralvkeLvrleelkevrvlD.....lrespelleelskvnvkk.viegDvtdkdkleealegv......dvvihlaslvd 78  
                  +vtGg+G lG+a+ ++Lv ++ ++++  +       +  ++l+ el  ++ +  v  +Dv d ++l++ l+++       +v+h a+++d
  KIR61147.1 1746 LVTGGTGTLGAAVGRHLVTAHGVRHLLLVSrrgieADGATRLQAELAGLGADVvVRACDVADREDLRRLLDEIppehplTAVVHSAGVTD 1835
                  69*****************99988775544444326666777777777777767889*************99733222245556555555 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.095
   3Beta_HSD    1 vvtGgaGFlGralvkeLvrleelkevrv.....lDlrespelleelskvnvkk.viegDvtdkdkleealegv 67  
                  ++tGg+G lG  + ++Lv ++++ ++       lD    pel  els ++    v  +D td + l ++l  +
  KIR61147.1 3513 LITGGTGTLGGLVARHLVTAHRVGHLVLvsrggLDAPGAPELATELSALGASVtVAACDTTDRAALARVLSAI 3585
                  69*****************99966654313334679999999999999998766999******9999998754 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.3    0.0015       1.2       1      48 [.    1747    1794 ..    1747    1810 .. 0.89
   2 ?    3.4   0.3     0.045        35       1      32 [.    3514    3545 ..    3514    3576 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0015
                     EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHHHHHHHHHHHT-SS CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaksgesaeeRleeelekk 48  
                     +TG+TG LG+ + + L++ +  v ++ l+ R   +++++ Rl++el+  
     KIR61147.1 1747 VTGGTGTLGAAVGRHLVTAHG-VrHLLLVSRRGIEADGATRLQAELAGL 1794
                     7******************97.76999999************9998765 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.045
                     EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SS CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpev.kiyllvRak 32  
                     +TG+TG LG  + + L++ ++ v +++l+ R  
     KIR61147.1 3514 ITGGTGTLGGLVARHLVTAHR-VgHLVLVSRGG 3545
                     8**************999997.66887777765 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0057       4.4       3      35 ..     202     234 ..     200     249 .. 0.87
   2 ?   -0.8   0.4       1.8   1.4e+03      13      58 ..    1457    1510 ..    1454    1520 .. 0.69
   3 ?    5.9   0.1     0.014        11       3      36 ..    2286    2319 ..    2284    2326 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0057
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEE CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigae 35 
                  + +aCs+  +al++A +++++g++ r+L  g  
   KIR61147.1 202 VDTACSTSAVALHLAVRALRNGECDRALAGGVT 234
                  5689***********************976655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.8
                   HHHHHHHHHHTTS-SEEEEEEEEEGGGCS-TT....T....HHHHTTB-EEEEE CS
  ACP_syn_III   13 alsvAdaliesgaakrvLvigaetlskilDwk....d....rstavlfGDGAgA 58  
                   +++  d li+ g++    +ig+e+   +lD      d     + + lf+DGA +
   KIR61147.1 1457 GMNFRDVLIALGMYPGEALIGSEAAGVVLDTGagvtDlapgDAVMGLFSDGAVG 1510
                   667777777777777777888888888888853333344445666699999976 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.014
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEE CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLvigaet 36  
                   + +aCs+ ++ l++A +++++g++  +L  ga +
   KIR61147.1 2286 VDTACSSSLVSLHLAVQALRNGECDLALAGGATV 2319
                   5689*******************99999877765 PP

>> GBP_PSP  Paralytic/GBP/PSP peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.2     0.005       3.9      15      21 ..     253     259 ..     251     260 .. 0.92
   2 ?    2.7   0.1      0.13     1e+02      15      21 ..    2337    2343 ..    2328    2344 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.005
                 TTS-EEE CS
     GBP_PSP  15 aDGRCKP 21 
                 +DGRCKP
  KIR61147.1 253 PDGRCKP 259
                 9****** PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.13
                  TTS-EEE CS
     GBP_PSP   15 aDGRCKP 21  
                  +DG CKP
  KIR61147.1 2337 PDGHCKP 2343
                  9****** PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2    0.0024       1.9       2      63 ..    1744    1835 ..    1743    1840 .. 0.83
   2 ?   -2.4   0.1       2.5     2e+03       7      35 ..    2949    2977 ..    2947    2983 .. 0.84
   3 ?   -0.3   0.1       0.6   4.7e+02       2      41 ..    3511    3576 ..    3510    3599 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0024
                     EEEEESTTSHHHHHHHHHCTT.TSEEEEEE.-TT........................T--TTSHHHHHHHHHHH--S....EEEE------ CS
  RmlD_sub_bind    2 kilvtGanGqlGseLakqlae.eglevlal.tre........................eldltdaeavaellkeakpd....vvvnaAAyta 63  
                     ++lvtG++G lG ++ + l   +g+  l l +r+                        ++d++d+e +++ll+e+ p+    +vv+ A  t+
     KIR61147.1 1744 TVLVTGGTGTLGAAVGRHLVTaHGVRHLLLvSRRgieadgatrlqaelaglgadvvvrACDVADREDLRRLLDEIPPEhpltAVVHSAGVTD 1835
                     589************87765526666555535559999999999*********999999*************99999877778999998775 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.5
                     STTSHHHHHHHHHCTTTSEEEEEE-TTT- CS
  RmlD_sub_bind    7 GanGqlGseLakqlaeeglevlaltreel 35  
                     G++Gq+G  L++  + +   + al r+++
     KIR61147.1 2949 GRTGQVGGTLRRDQDGAREVLAALARAHV 2977
                     99***********9999877777777765 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.6
                     EEEEESTTSHHHHHHHHHCTTTSE..EEEEE-TT........................T--TTSHH CS
  RmlD_sub_bind    2 kilvtGanGqlGseLakqlaeegl..evlaltre........................eldltdae 41  
                     ++l+tG++G lG  +a+ l  ++   +++ ++r                         ++d td++
     KIR61147.1 3511 TVLITGGTGTLGGLVARHLVTAHRvgHLVLVSRGgldapgapelatelsalgasvtvaACDTTDRA 3576
                     589999999999988888766543113333455544444444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3943 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 1.41u 0.33s 00:00:01.74 Elapsed: 00:00:00.48
# Mc/sec: 24446.89
//
Query:       KIR61148.1  [L=254]
Description: oleoyl-ACP hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-52  179.0   0.0    1.7e-52  178.8   0.0    1.0  1  Thioesterase   Thioesterase domain
    5.1e-13   50.1   8.6    7.3e-13   49.6   8.6    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
      7e-07   29.1   0.0    0.00094   18.9   0.0    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
    0.00041   19.7   0.0     0.0096   15.2   0.0    2.1  2  Hydrolase_4    Serine aminopeptidase, S33
      0.001   18.7   0.0      0.048   13.2   0.0    2.1  2  DLH            Dienelactone hydrolase family
  ------ inclusion threshold ------
      0.023   14.6   0.0      0.027   14.3   0.0    1.3  1  Abhydrolase_3  alpha/beta hydrolase fold
      0.055   13.1   0.0      0.098   12.3   0.0    1.4  1  FSH1           Serine hydrolase (FSH1)


Domain annotation for each model (and alignments):
>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.8   0.0   6.8e-56   1.7e-52       2     229 ..      25     247 ..      24     249 .. 0.95

  Alignments for each domain:
  == domain 1  score: 178.8 bits;  conditional E-value: 6.8e-56
                   EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST..SHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHC.T-SEE CS
  Thioesterase   2 pLflfppagGsasvfrslasklsdpvvevlavqlpgre..rdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesq.Glavk 95 
                   +L ++p+agGsas+f+ la+ l+++ v+vlavq+pgr+  r ep++++i  la+  +ealr++ ++ P+alfGhS+G++l fe+Ar+ e+     + 
    KIR61148.1  25 RLLCLPHAGGSASYFHPLARLLDTR-VDVLAVQYPGRQdrRLEPCIDDIRVLADAAFEALRPVLDR-PVALFGHSMGATLGFELARRIEAAdEANPV 119
                   699*********************9.*************999************************.************************9999** PP

                   EEEEESCCCCCCHHCHHCCCHTTHHTHHHHHCCTTHHHCCTTTHCCHHHHHHHHHHHHHHHHHTCCS-TTSCSEHHCEEEEEEGSS-CTCCCCCCCH CS
  Thioesterase  96 slflidssapseteaqeasrraedeefveeltdlggtepeelledeellsellpalradyraleqyslrpeaaqklratlfngsddklkdldtlela 192
                   +lf ++  ap + +  e  +r +d+ +++el  l gt + ++l dee++++ lpa+rady+a e+y+l ++ +  +++t ++g+ d++++ld  +  
    KIR61148.1 120 RLFASGRRAPAT-QGGELVHRFDDDRLLGELASLSGT-DVRVLGDEEMMRSVLPAIRADYKAAESYRLTEQVRLRCPITALAGDADPKASLD--DVR 212
                   **********99.8888888888888***********.******************************************************..677 PP

                   CHCHCTCESCEEEEEESSHCCHHHSHHHHHHHHHHHH CS
  Thioesterase 193 erweqktsgevsvhvlegdhfylledrleavleiiek 229
                   + w+++t+ e++++v +g+hf+l e + +a+++ i+ 
    KIR61148.1 213 A-WQRHTTAEFDLRVYPGGHFFLAE-HGQAIVQLITE 247
                   7.**********************8.88888887765 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   8.6   2.8e-16   7.3e-13       2     219 ..      27     243 ..      26     244 .. 0.60

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 2.8e-16
                    EEE.--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH...CHHH.HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC..EEEE CS
  Abhydrolase_6   2 lll.HGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldled...ladl.aalldelaagggpvvlvGHSlGGalalaaaplalvvgvl 92 
                    l+l H+ g+sas ++  pLa+ll  +v vla+++pG   + +     +d   lad   ++l+ +   ++pv l+GHS+G++l+ +   la+  ++ 
     KIR61148.1  27 LCLpHA-GGSASYFH--PLARLLDTRVDVLAVQYPGRQ-DRRLEPCIDDirvLADAaFEALRPV--LDRPVALFGHSMGATLGFE---LAR--RIE 111
                    555454.46678889..********************5.5555555555111333332244444..48999**************...883..333 PP

                    ES-..----TTTS----TTHHHHHHTT-CCCCHCCHS-HS.CCCCHHH.....CCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEE.CTT-C CS
  Abhydrolase_6  93 ldppptalpagllaaalelllallallrllawlsreplpr.lfladed.....adaawrarlarlaallaglgllpaaawadlpvpllvl.ggeDp 181
                     +    a p +l+a  ++ +++ ++ l++ +++  ++l++   l+++d     +++  r  l + +a  ++ + +++++  +l++p+  l g++Dp
     KIR61148.1 112 AAD--EANPVRLFASGRRAPATQGGELVH-RFDDDRLLGElASLSGTDvrvlgDEEMMRSVLPAIRADYKAAESYRLTEQVRLRCPITALaGDADP 204
                    333..234444444444444444444444.4442221111122222222232225666666666667777777889999*******9666478899 PP

                    ....HHHHCHHCCCHSTTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 182 ....lvprllerllaqagarlpvvlpgaGHlphleepdevae 219
                           r ++r+ + a ++l  v+p +GH+++ e+ +++++
     KIR61148.1 205 kaslDDVRAWQRHTT-AEFDL-RVYP-GGHFFLAEHGQAIVQ 243
                    666522233455555.66666.5555.99*999989899876 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   3.7e-07   0.00094       3      93 ..      27     109 ..      25     120 .. 0.79
   2 !    8.7   0.0   0.00048       1.2     203     255 ..     187     236 ..     112     238 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3.7e-07
                    EEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH.HHHHHCTTSSEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_1   3 lvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddld.rildalgddkltlvGhSmGGmialayaae 93 
                    l++ h+++  s+ ++   la+ L+  + dv+++  +G    +  p ci d   ++ v +d    +l +  d++++l GhSmG ++++++a +
     KIR61148.1  27 LCLPHAGGSASY-FHP--LARLLDT-RVDVLAVQYPGRQDRRLEP-CI-D---DIRVLADAAfEALRPVLDRPVALFGHSMGATLGFELARR 109
                    566677666665.9**..**99998.**********976655555.55.4...444666666477************************976 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00048
                    HHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 203 rlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafle 255
                    ++ +     +p+  ++g+ Dp ++ +  + +++++  ++ +++ ++gH+ + e
     KIR61148.1 187 EQVR---LRCPITALAGDADPKASLDDVRAWQRHTTAEFDLRVYPGGHFFLAE 236
                    3333...558************************9999**********98766 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.8e-06    0.0096      56      98 ..      66     111 ..      57     142 .. 0.77
   2 ?    2.5   0.0     0.028        73     185     230 ..     186     230 ..     159     237 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.8e-06
  Hydrolase_4  56 ddyvdDlaafvekvk.eehpel..plfllGhSmGGliallyllryp 98 
                  + ++dD++ + +++  +  p l  p+ l+GhSmG+++ ++++ r +
   KIR61148.1  66 EPCIDDIRVLADAAFeALRPVLdrPVALFGHSMGATLGFELARRIE 111
                  556788888887776333443366*************999996544 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.028
  Hydrolase_4 185 eraakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypgl 230
                  +++ +++ P+  l G+aD+  + ++ r+  ++ ++ +  l++ypg+
   KIR61148.1 186 TEQVRLRCPITALAGDADPKASLDDVRAWQRHTTA-EFDLRVYPGG 230
                  4566788************9999998888888875.9999999986 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.019        49      92     123 ..      84     114 ..      60     119 .. 0.77
   2 !   13.2   0.0   1.9e-05     0.048     136     195 ..     184     239 ..     172     248 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.019
         DLH  92 vpevstkkvgvvGfCmGGalalllaaevpevd 123
                 +p v +  v++ G  mG++l ++la++ +++d
  KIR61148.1  84 RP-VLDRPVALFGHSMGATLGFELARRIEAAD 114
                 33.667889****************9987665 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.9e-05
         DLH 136 eleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsre 195
                 +l+e+ ++ +pi al+g++D+    d+v   +       ++++l vYp  gH F++++ +
  KIR61148.1 184 RLTEQVRLRCPITALAGDADPKASLDDVRAWQRH---TTAEFDLRVYP-GGHFFLAEHGQ 239
                 67888899************98888876666555...5899*******.79*99998766 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.1e-05     0.027      27     101 ..      47     119 ..      31     204 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.1e-05
                    HHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EE CS
  Abhydrolase_3  27 elgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepkva 101
                    ++++ v++v+Y    + ++   ++d+   +  ++e      +  + ++l+G S G++l   +a+r+ +++e +++
     KIR61148.1  47 DTRVDVLAVQYPGRQDRRLEPCIDDIRVLADAAFEA--LRPVLDRPVALFGHSMGATLGFELARRIEAADEANPV 119
                    67899999***9999999999999999999998887..4558899******************998887665544 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.8e-05     0.098     105     202 ..      92     233 ..      62     238 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.8e-05
        FSH1 105 GiiGFSqGaalaallaslleellkeashpslkfailvsGfkleepk..............................................yeeyy.. 155
                  + G S Ga+l+  la  +e  ++   +p   + +++sG +++ ++                                               +e y  
  KIR61148.1  92 ALFGHSMGATLGFELARRIEAADE--ANP---VRLFASGRRAPATQggelvhrfdddrllgelaslsgtdvrvlgdeemmrsvlpairadykAAESYrl 185
                 689*****************9886..455...66899*****999999*******************************99999999999774445667 PP

        FSH1 156 .eedkiqtptLhvlGelDtvvdeerseaLaeafknsskvlkHpggHfv 202
                  e+ ++++p+  + G++D   + +  +a  ++++ + ++  +pggHf+
  KIR61148.1 186 tEQVRLRCPITALAGDADPKASLDDVRAWQRHTTAEFDLRVYPGGHFF 233
                 789999*****************************9**********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1832.38
//
Query:       KIR61149.1  [L=400]
Description: hypothetical protein TK50_25690 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-17   62.4   0.0    7.4e-17   61.2   0.0    1.6  2  DUF1205          Protein of unknown function (DUF1205)
    4.2e-08   32.4   0.0    9.6e-07   27.9   0.0    2.0  2  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
    1.2e-05   25.4   0.0    0.00084   19.4   0.0    2.3  1  Glyco_trans_4_2  Glycosyl transferase 4-like
    2.5e-05   24.3   0.0    4.1e-05   23.6   0.0    1.3  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
     0.0002   21.8   2.4     0.0002   21.8   2.4    2.5  3  Glyco_trans_4_4  Glycosyl transferase 4-like domain
     0.0024   17.9   0.4      0.015   15.3   0.4    2.2  1  Glyco_transf_4   Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> DUF1205  Protein of unknown function (DUF1205)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   2.5e-20   7.4e-17       1      95 []     193     287 ..     193     287 .. 0.96
   2 ?   -2.7   0.0       2.2   6.7e+03      27      77 ..     344     359 ..     321     380 .. 0.56

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 2.5e-20
                 EE-S-GGGS------EEE-------SS----GGGSS--SS-EEEEE-------------STTTTHHHHHTSSSEEEE---TTTTSS-SS--SSEE CS
     DUF1205   1 idvaPpslrlddgketvsmryvpyNgasvveeWlkkksarkRvcvtlGtskaedladadlleavldqvaelDaEivvaldeearselrelpdnvR 95 
                 +d+ P sl+        + r++ yNg+   ++W++++++r+Rvc+t Gt+++     +d++ +v+ +++ lD +iv+a+   +r +l+ lpdnvR
  KIR61149.1 193 VDPWPGSLQNFGSPGRLPRRFIAYNGEGAAPDWVTERPDRPRVCITWGTTNEILGGAKDVWPRVIRALTPLDIDIVLAIGPADRAKLGRLPDNVR 287
                 68899999999899999***********************************988889************************************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.2
                 S----GGGSS--SS-EEEEE-------------STTTTHHHHHTSSSEEEE CS
     DUF1205  27 asvveeWlkkksarkRvcvtlGtskaedladadlleavldqvaelDaEivv 77 
                 a+ v ++                                   a+ D E ++
  KIR61149.1 344 AALVLDY-----------------------------------AKADEETIA 359
                 4444333...................................344444443 PP

>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.02        59     109     143 ..     108     142 ..     103     149 .. 0.91
   2 !   27.9   0.0   3.2e-10   9.6e-07     319     419 ..     281     379 ..     274     387 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.02
       UDPGT 109 kllkklqeskfdvvladpvlpcgellAellkiptv 143
                 +l++ +q  + d v++dpv  +g l+A    ip+v
  KIR61149.1 108 DLMRFAQRWQPDLVITDPVIFAGPLVAAAQGIPVV 142
                 689999999********************999987 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 3.2e-10
       UDPGT 319 tLakntllvkWlPqndlLgHPktkAFvtHaGangvyEaisnGvPmvglPlFgdqrdNikrmeakgaavtlnvkemtsedllnAlkevindksykenimr 417
                  L  n ++ + lP n  L  P  +A v  +G+ +++ a s GvP v lP  g+ + N  + +  gaa+ l+  +   e +++A+  v+ d+  +  + +
  KIR61149.1 281 RLPDNVRVAENLPIN--LFMPTCQAIVNQGGTGSLLTAASVGVPQVLLPETGETPVNSLSFRESGAALVLDYAKADEETIATAVTRVLTDEAIRTAARK 377
                 567788888888888..556**********************************************************************988777666 PP

       UDPGT 418 Ls 419
                 +s
  KIR61149.1 378 VS 379
                 65 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.8e-07   0.00084      49     118 ..      89     158 ..       9     167 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.8e-07
  Glyco_trans_4_2  49 rlkvdrkg..pleylk.af.klkklikkikPDvvhahyakpygllgslaarlsgvipvvlsvwGldv.lkfpkks 118
                      rl++  ++  p+e+++ +   l++  ++ +PD+v    + p++++g l+a   g ipvv ++wG d+ + +p ++
       KIR61149.1  89 RLRD-ERFvpPVELATrMTpDLMRFAQRWQPDLV---ITDPVIFAGPLVAAAQG-IPVVRNIWGPDIlYGHPVQG 158
                      3343.344589999977999**************...3478899**********.************66556655 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.4e-08   4.1e-05      64     146 ..     293     370 ..     264     387 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.4e-08
                      SSHHHHHHHH-EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS-- CS
  Glyco_tran_28_C  64 dkmaeaikaadLvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaekl 146
                      + ++  +   + ++  +G+g+++ ++++g+p +l p       +   N  ++ + gaalvl+++++++e+++ a++++++++ 
       KIR61149.1 293 P-INLFMPTCQAIVNQGGTGSLLTAASVGVPQVLLPETG----ETPVNSLSFRESGAALVLDYAKADEETIATAVTRVLTDEA 370
                      5.66666777788999********************999....88*******************************9998875 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   2.4   6.7e-08    0.0002      10     113 ..      22     155 ..      17     183 .. 0.61
   2 ?   -0.5   0.0      0.51   1.5e+03       1     147 [.     247     282 ..     195     296 .. 0.65
   3 ?   -2.1   0.0       1.5   4.5e+03      90     119 ..     315     345 ..     302     378 .. 0.47

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6.7e-08
  Glyco_trans_4_4  10 laraLaarGheVtvltpapapg...............................apeleedgvrvh.rlpvprrp..splad.laalralrrllr 68 
                      la a++a+Gh+V++ ++++ ++                                  ++ + ++   r++++ ++   p+    +++++l r+  
       KIR61149.1  22 LAWAFRAAGHDVRIAAQRQLTSiiantgltpvevgddydfmagmvalrsgnkfTA-AQVADLTFEeRVRLRDERfvPPVELaTRMTPDLMRFA- 113
                      77899***********666555566666666666666666666666666554422.2222222222555444432112222145899*****9. PP

  Glyco_trans_4_4  69 qrrerpdvvhahs.ptaglaarlarrrrgiplvvtlhglllrrgsg 113
                       +r++pd+v++   + ag+++++a+   gip+v +++g +  +g +
       KIR61149.1 114 -QRWQPDLVITDPvIFAGPLVAAAQ---GIPVVRNIWGPDILYGHP 155
                      .**********99455666554444...9*******9644333322 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.51
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgapeleedgvrvhrlpvprrpspladlaalralrrllrqrrerpdvvhahsptaglaarlarrr 94 
                      gG++ +  +++raL  +  ++++ +                                                                     
       KIR61149.1 247 GGAKDVWPRVIRALTPLDIDIVLAIG-------------------------------------------------------------------- 272
                      34444444444444444444444444.................................................................... PP

  Glyco_trans_4_4  95 rgiplvvtlhglllrrgsgavrrlyralerrllrradavlvvseaeaeelral 147
                                                                 +a++++l +l
       KIR61149.1 273 -------------------------------------------PADRAKLGRL 282
                      ...........................................4444444333 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.5
  Glyco_trans_4_4  90 larrrrgiplvvtlhg..lllrrgsgavrrly 119
                       a+   g+p v+ + +  + +++ s ++  ++
       KIR61149.1 315 TAA-SVGVPQVLLPETgeTPVNSLSFRESGAA 345
                      344.5677777777642222222222222222 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.4   4.9e-06     0.015      11     108 ..      22     150 ..      17     171 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.9e-06
  Glyco_transf_4  11 LaraLarrGheVtvvtpgddgpleeev..................................elvvrvprvplpllkrllrslaflrrlrrllkre 71 
                     La a++++Gh+V++ ++++   +  +                                       rv+ +  ++ ++  +  ++ ++l+r ++r+
      KIR61149.1  22 LAWAFRAAGHDVRIAAQRQLTSIIANTgltpvevgddydfmagmvalrsgnkftaaqvadlTFEERVRLRDERFVPPVELATRMTPDLMRFAQRW 116
                     677888889999999777766666666677777788888888888888888888877766533334444444555666777888999******** PP

  Glyco_transf_4  72 kpDvvHahspaalgaallalrrrlgiplVltvHglye 108
                     +pD+v +   +++g  ++a +   gip+V  + g++ 
      KIR61149.1 117 QPDLVITDPVIFAGPLVAA-A--QGIPVVRNIWGPDI 150
                     *****77776666655444.4..5*****98877774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2647.93
//
Query:       KIR61150.1  [L=75]
Description: acyl carrier protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-05   23.2   0.2    8.2e-05   22.9   0.2    1.1  1  PP-binding  Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.2   4.6e-09   8.2e-05       3      67 .]       7      72 ..       5      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.6e-09
  PP-binding  3 lrelvaevlgvpleeid.pdtdlfd.lGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67
                 +++v+  lg+p+   + +d +l++  G DS+ +++ll  le+e g +i l  +++ ++l e+++++
  KIR61150.1  7 FLAIVSAELGLPVRH-EqVDLPLDSvPGWDSIHLLSLLTILERETGRQIALPAVLQATNLDEIYRAV 72
                68999999**98776.449999**8689***********************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 561.38
//
Query:       KIR61151.1  [L=633]
Description: methoxymalonyl-ACP biosynthesis protein FkbH [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4335.28
//
Query:       KIR61152.1  [L=342]
Description: 3-oxoacyl-ACP synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-16   59.1   0.0    6.7e-16   57.9   0.0    1.6  1  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    2.9e-08   33.4   1.8      6e-08   32.4   1.4    1.6  2  Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal 
    5.2e-07   29.3   0.2    7.2e-07   28.8   0.2    1.2  1  Thiolase_N       Thiolase, N-terminal domain
    1.3e-06   28.5   0.0    6.1e-05   23.1   0.0    2.5  2  ACP_syn_III_C    3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    1.2e-05   24.7   0.0    1.6e-05   24.3   0.0    1.1  1  FAE1_CUT1_RppA   FAE1/Type III polyketide synthase-like prote
    0.00033   20.3  10.0      0.004   16.8   9.7    2.4  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
  ------ inclusion threshold ------
      0.013   14.2   0.0      0.026   13.2   0.0    1.4  2  SpoVAD           Stage V sporulation protein AD (SpoVAD)


Domain annotation for each model (and alignments):
>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   2.6e-19   6.7e-16       3      65 ..     117     188 ..     115     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 2.6e-19
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGCS-TT.........THHHHTTB-EEEEEEEEEEES CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlskilDwk.........drstavlfGDGAgAvvlease 65 
                  l+++C+g+v+al+vA+++++sgaa+++Lv ga+ ++k++D +         ++ + vlfGDGAgA+vl+++ 
   KIR61152.1 117 LQSGCTGAVQALDVARHMLRSGAARTALVLGADSCAKHFDLTadvsalppeEQVNGVLFGDGAGAAVLGTTP 188
                  799**************************************8655555544477788************984 PP

>> Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   1.4   2.3e-11     6e-08      99     225 .]      60     188 ..      46     188 .. 0.87
   2 ?   -1.9   0.0       0.7   1.8e+03      78     102 ..     267     292 ..     265     299 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 2.3e-11
  Chal_sti_synt_N  99 vlklgkeaalkalkewGrPkskithlvfvsss.evelPGadlklakklGlrpsvkrvmlyflGcygGatvlrlakdiaennkGarvlvvaseit 191
                      + +l+++aa++al   G  ++++  +v  +ss ++ +P +   +a++lG++   + +  ++ Gc g + +l +a+ +    +    lv  ++  
       KIR61152.1  60 LADLATTAAERALAAAGMTAADVDLVVMGTSSpDMLMPATVNVVADQLGVDG--VPTYQLQSGCTGAVQALDVARHMLRSGAARTALVLGADSC 151
                      6789*******************9999988775899*************965..45677899*****************9999999*******9 PP

  Chal_sti_synt_N 192 vlgfrgPskdr...lddlvGaalfGdGaaaviiGadP 225
                      +  f   ++     +++ v   lfGdGa a+++G+ P
       KIR61152.1 152 AKHFDLTADVSalpPEEQVNGVLFGDGAGAAVLGTTP 188
                      99998665543222899*****************987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.7
  Chal_sti_synt_N  78 Peltaemapsldarleivna.evlkl 102
                      P+l+ +m++ ++arl++ +a ev  +
       KIR61152.1 267 PQLSGRMTAEIQARLDVPQAqEVSCV 292
                      899999*********99765145544 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.2   2.8e-10   7.2e-07      18     117 ..      55     153 ..      42     184 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.8e-10
                 TTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEEST CS
  Thiolase_N  18 lkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsms 116
                  + +s  +L+++a++++l+ ag+++++vd v++G+    +   +  + +a ++g+ + vp+  ++  c  +++a+  a  ++++g+a  +++ G+ s  
  KIR61152.1  55 EARFSLADLATTAAERALAAAGMTAADVDLVVMGTSSPDMLMPATVNVVADQLGV-DGVPTYQLQSGCTGAVQALDVARHMLRSGAARTALVLGADSCA 152
                 5678899************************************************.**************************************98865 PP

                 T CS
  Thiolase_N 117 n 117
                 +
  KIR61152.1 153 K 153
                 5 PP

>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.049   1.3e+02       1      20 [.      72      91 ..      72     142 .. 0.83
   2 !   23.1   0.0   2.4e-08   6.1e-05       4      73 ..     254     321 ..     251     326 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.049
                   HHHTT--GGG-SEEEE-SSS CS
  ACP_syn_III_C  1 Lekagltpedidalvphqan 20
                   L++ag+t++d+d++v+   +
     KIR61152.1 72 LAAAGMTAADVDLVVMGTSS 91
                   789***********986655 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 2.4e-08
                    TT--GGG-SEEEE-SSSHHHHHHHHHHHT--GGGB--THHHH-B-GGGHHHHHHHHHHHTTSS-TT-EEE CS
  ACP_syn_III_C   4 agltpedidalvphqanlriidavakklglpeekvvvnldeyGntsaasiplaLdeaveegklkpgdlvl 73 
                     g++ + +d+++p q + r+  ++  +l++p+ + v  + e+Gnt+ a  +  L++++    +  gd+++
     KIR61152.1 254 LGWDRDGLDYVLPPQLSGRMTAEIQARLDVPQAQEVSCVGETGNTGNALPFFQLERLLP--GMVTGDRAV 321
                    6899999*****************************************99999998887..566666665 PP

>> FAE1_CUT1_RppA  FAE1/Type III polyketide synthase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   6.4e-09   1.6e-05      79     203 ..      56     184 ..      39     204 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 6.4e-09
  FAE1_CUT1_RppA  79 areEaeevlfgavdellaktkvspkdidilvvncslf.sptPslsamvvnryklredvksynLsgmGCsAglisidlaknllqvhkntlalvvst 172
                     ar    ++ ++a +  la ++++++d+d++v+ +s      P+  ++v  + ++ + v +y+L + GC+ ++ ++d+a+++l+     +alv+  
      KIR61152.1  56 ARFSLADLATTAAERALAAAGMTAADVDLVVMGTSSPdMLMPATVNVVADQLGV-DGVPTYQLQS-GCTGAVQALDVARHMLRSGAARTALVLGA 148
                     55556667778889999**************98875414578888888888887.68******98.***************************** PP

  FAE1_CUT1_RppA 173 EnitlnwYvGnersml.....lanclFRvGgaavll 203
                     +++++++ +  + s l     +   lF  G+ a++l
      KIR61152.1 149 DSCAKHFDLTADVSALppeeqVNGVLFGDGAGAAVL 184
                     ****99988888877744444555677777655555 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.3     0.075   1.9e+02      90     120 ..      62      88 ..      55      96 .. 0.82
   2 !   16.8   9.7   1.5e-06     0.004     149     247 ..      94     184 ..      64     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.075
                    HHHHHHHHHHHHHHTS-HHTCTTGGEEEEEE CS
  ketoacyl-synt  90 rllleaawealedagltpeeldgsrvgvfiG 120
                     l+ +aa++al+ ag+t++++d     v++G
     KIR61152.1  62 DLATTAAERALAAAGMTAADVDL----VVMG 88 
                    68999************998875....4444 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.5e-06
                    HSTTHHHHHHHHHHT--S.SEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEE CS
  ketoacyl-synt 149 vlanviagrisyalglrG.psvtvdtACsSslvavhaavqslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvG 243
                    +l   + + ++ +lg++G p++ +++ C+ +  a+++a ++lrsg a +al+ G++   +++ + + +   +l p+       ++ +G+ +G+G+G
     KIR61152.1  94 MLMPATVNVVADQLGVDGvPTYQLQSGCTGAVQALDVARHMLRSGAARTALVLGAD--SCAKHFDLTADVSALPPE-------EQVNGVLFGDGAG 180
                    4555566899999*****7789**********************************..556666777777777775.......6779999****99 PP

                    EEEE CS
  ketoacyl-synt 244 avvL 247
                    a vL
     KIR61152.1 181 AAVL 184
                    9999 PP

>> SpoVAD  Stage V sporulation protein AD (SpoVAD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     1e-05     0.026      43     132 ..      54     147 ..      45     199 .. 0.77
   2 ?   -2.9   0.0      0.85   2.2e+03     193     231 ..     231     269 ..     227     281 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1e-05
                 T-SSHHHHHHHHHHHHHHHHHHHTT--GGG-SEEEEE....ESSGGGHHHHHHHHHH-...--EEEB--GGGHHHHHHHHHHHHHHTTS-SEEEEEE CS
      SpoVAD  43 geksfekaesklleeavkkalkkanlkkedidfllaG....DLlnqlisssfaarelk...iPflglygaCstsaeslalaallvdggfakrvlaat 132
                 ge  f  a   l ++a++ al  a++++ d+d+++ G    D+l    + + +a +l+   +P + l + C+  +++l +a  ++ +g a+++l+  
  KIR61152.1  54 GEARFSLA--DLATTAAERALAAAGMTAADVDLVVMGtsspDMLMP-ATVNVVADQLGvdgVPTYQLQSGCTGAVQALDVARHMLRSGAARTALVLG 147
                 56666665..48899********************99444444443.356788888863337999999**********************9988654 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.85
                 -TT-HHHHHHHHHHHHHHHHHHHTT--GGG-SEEEESS- CS
      SpoVAD 193 dplnmGaamapaavdtieahlkdterkpedyDlivtGDl 231
                 d   + +a+ p av+t+ + l  ++ + +  D ++   l
  KIR61152.1 231 DYRAVQEAVPPMAVETLDEVLDVLGWDRDGLDYVLPPQL 269
                 555666788899999999999888888888887776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2645.57
//
Query:       KIR61153.1  [L=7005]
Description: hypothetical protein TK50_25735 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
          0 1219.1  12.0    1.9e-92  309.4   0.2    7.3  8  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
   8.2e-247  817.4  15.9      1e-77  261.8   0.0    4.4  4  Acyl_transf_1    Acyl transferase domain
   4.5e-190  626.2  23.6    2.3e-57  193.8   1.6    5.5  5  KR               KR domain
     3e-181  591.7  17.2    2.5e-45  153.3   0.2    5.2  4  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   4.4e-175  581.0  34.1    2.4e-54  184.6   4.3    4.8  4  PS-DH            Polyketide synthase dehydratase
    5.1e-67  223.4   0.0    7.1e-18   65.1   0.0    5.2  5  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    1.6e-54  182.1   2.1    2.4e-12   47.0   0.0    4.9  4  PP-binding       Phosphopantetheine attachment site
    1.4e-33  116.0   6.2    1.6e-10   40.8   0.2    4.4  4  adh_short        short chain dehydrogenase
    5.4e-29  101.3   6.7    1.7e-06   27.6   0.1    5.0  4  Thiolase_N       Thiolase, N-terminal domain
    1.5e-12   47.6   9.6     0.0018   17.8   0.3    3.5  3  Epimerase        NAD dependent epimerase/dehydratase family
    4.6e-12   46.0   0.1     0.0088   15.5   0.0    3.3  3  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    5.9e-10   38.6   8.1    2.8e-09   36.4   8.1    2.3  1  Docking          Erythronolide synthase docking
    1.4e-09   37.5   0.0      0.016   14.4   0.0    3.2  3  Polysacc_synt_2  Polysaccharide biosynthesis protein
    8.6e-06   25.1   8.3      0.014   14.5   0.3    3.7  3  NAD_binding_4    Male sterility protein
    0.00012   21.7  12.3       0.33   10.5   0.4    3.6  3  NmrA             NmrA-like family
     0.0018   18.1  17.8        2.2    8.2   0.1    6.5  5  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
     0.0025   17.5   0.1         15    5.2   0.1    4.5  4  Thiolase_C       Thiolase, C-terminal domain
  ------ inclusion threshold ------
      0.011   14.8   0.2        3.5    6.5   0.0    3.1  3  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
       0.61    9.8   2.9          7    6.4   0.2    2.9  2  GBP_PSP          Paralytic/GBP/PSP peptide
          1    9.8   4.1         13    6.3   0.1    3.4  3  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.8   0.0   2.8e-94   2.5e-91       2     253 .]      34     285 ..      33     285 .. 0.98
   2 !  305.7   0.0   2.9e-94   2.6e-91       2     253 .]    1734    1983 ..    1733    1983 .. 0.97
   3 ?   -0.2   0.1      0.66   5.9e+02      95     153 ..    2019    2076 ..    2016    2092 .. 0.67
   4 ?   -2.0   0.0       2.3   2.1e+03      82     128 ..    2319    2363 ..    2313    2391 .. 0.71
   5 !  297.7   0.0   7.7e-92   6.9e-89       2     253 .]    3481    3731 ..    3480    3731 .. 0.97
   6 ?   -1.2   0.0       1.4   1.2e+03      95     153 ..    3767    3826 ..    3765    3842 .. 0.68
   7 !  309.4   0.2   2.1e-95   1.9e-92       2     253 .]    5212    5463 ..    5211    5463 .. 0.98
   8 ?    0.3   0.0      0.47   4.2e+02      95     153 ..    5499    5558 ..    5497    5576 .. 0.67

  Alignments for each domain:
  == domain 1  score: 305.8 bits;  conditional E-value: 2.8e-94
                    --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllle 94 
                    epvaivGmg+r+Pgg   ++++w+l+l+g dai+e+p+dr w+ d+ly+p+++ +g+++t++ggfl  ++dfdp ffg+sprea a+dpqqrllle
     KIR61153.1  34 EPVAIVGMGCRYPGGIRsPHDLWQLVLNGTDAIGEFPTDRgWNLDTLYHPDPDHPGTSYTRHGGFLYdAADFDPDFFGMSPREALATDPQQRLLLE 129
                    89*************999****************************************************************************** PP

                    HHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt  95 aawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslr 190
                    ++we+le+ag++p++l+g+ +gvf+Gv++ dy++  a +++++  +++   +g+ + + ++gr+sya+g++Gp+++vdtACsSslva+h+avq+lr
     KIR61153.1 130 TTWETLEHAGIDPTTLRGTHTGVFTGVMYDDYGNRLAETSPDG-FEGYL-GTGS-AGSLASGRVSYAFGFEGPAISVDTACSSSLVALHLAVQALR 222
                    ********************************88888888875.89999.9999.***************************************** PP

                    TTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    +ge+d+alaGGv+++ tp a+  fs+++ l+pdgr+k+f+++adG  ++EGvG+++++rl+da
     KIR61153.1 223 NGECDLALAGGVTVMATPAAFTEFSRQRGLAPDGRSKSFAASADGAAWSEGVGLLLVERLSDA 285
                    *************************************************************98 PP

  == domain 2  score: 305.7 bits;  conditional E-value: 2.9e-94
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     ep++ivGmg+r+Pgg+  +e++w+l+ +grdai+e+p+dr wd d+lydp+++ +g+++++ ggfl+ +  fd+ ffgisprea amdpqqrll
     KIR61153.1 1734 EPIVIVGMGCRYPGGVRsPEDLWQLVADGRDAITEFPTDRgWDLDALYDPDPEHPGTSYVRTGGFLHdAPLFDADFFGISPREALAMDPQQRLL 1827
                     89*************999**************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     le++we++e+ag++pe+l+gsr+gvf+G+  +dy++l+a +e   + +++  +vg+ +a++++gr+sy++g++Gp++++dtACsSslva+h+av
     KIR61153.1 1828 LETSWETFENAGIDPESLRGSRTGVFTGTHDRDYGTLVAGNE---SLEGYL-IVGN-SASILSGRLSYTYGFEGPAISLDTACSSSLVALHLAV 1916
                     **********************************87555553...478999.****.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     q+lrsge+d+alaGGv++l tp +++ fs+++ l+pdgr k+f+++adG+ ++EGvG+++++rl+da
     KIR61153.1 1917 QALRSGECDLALAGGVSVLATPASFVEFSRQRGLAPDGRAKSFAAGADGTSWSEGVGLLLVERLSDA 1983
                     *****************************************************************98 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.66
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTH CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgsevkaspkavgavlanv 153 
                     + ++al  agltp+++d  +   +g  +G  ++   a+a+l  +g+ ++  p ++g++ +n+
     KIR61153.1 2019 VIRQALTTAGLTPTDVDAVEahgTGTKLGDPIE---AQALLATYGQ-NREQPLWLGSIKSNM 2076
                     6789*********99987774445555555555...4466777774.667776777644444 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 2.3
                     HCTS-HHHHHHHHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHH CS
  ketoacyl-synt   82 aeamdpqqrllleaawealedagltpeeldgsrvgvfiGvgagdyaa 128 
                     ++ + p    l++a ++++++ g+ p+++ g + g ++++ ++  +a
     KIR61153.1 2319 VDVVQPTLFALMTALARTWQHHGIHPDAVIGHSQGEIAAAHIA--GA 2363
                     5566677778999**************9988888888887777..33 PP

  == domain 5  score: 297.7 bits;  conditional E-value: 7.7e-92
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     +p++ivGm++rfPgg   + ++w+l+ +g da++++p +r wd d+ly+p+++ +gk+++++ggfl+ +d+fd+ +fgisprea a+dpqqrll
     KIR61153.1 3481 DPIVIVGMACRFPGGARtPGDLWRLVADGVDAVGDFPVNRgWDLDELYHPDPDRHGKTYVRRGGFLHdADEFDADLFGISPREALATDPQQRLL 3574
                     69************9988**************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     le++we le+a ++p++l+gs++gvfiG++a++y+ l++   d++  +++  ++g+ +++v++gri+y++g++Gp++tvdtACsSslva+h+av
     KIR61153.1 3575 LETVWEVLENAAIDPTSLRGSSTGVFIGAAAQEYG-LNTRAGDTG-PEGYL-ITGS-TTSVASGRIAYTFGFEGPTMTVDTACSSSLVALHLAV 3664
                     **********************************5.555555664.79999.9999.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     q+lr+ge+++a+aGGv ++  p  ++ fs+++ l+pdgrck+f ++adG+ +GEG G+++++rl+da
     KIR61153.1 3665 QALRNGECELAVAGGVAVMAAPTLFVEFSRQRGLAPDGRCKPFGADADGTAWGEGTGLLLVERLSDA 3731
                     *****************************************************************98 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 1.4
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTT.GGGSCTTHHHHHSTTH CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgs.evkaspkavgavlanv 153 
                     + ++al  agltp+++d  +   +g  +G  ++ +a    l  +g+ ++ + p ++g+v +n+
     KIR61153.1 3767 VIRQALSTAGLTPDDVDAVEahgTGTPLGDPIEAQAL---LATYGRdRRAGEPLWIGSVKSNI 3826
                     6789***********9777766688888888886644...33344323666667777644444 PP

  == domain 7  score: 309.4 bits;  conditional E-value: 2.1e-95
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     ep+aivGm++rfPgg++ ++++w+l+ +grdai+++p +r w++d+lydp+++ +gk++t++ggfl  +d+fd++ffg+spr+a a dpqqrll
     KIR61153.1 5212 EPIAIVGMACRFPGGVGsPQDLWRLVSDGRDAIGPFPGNRdWNVDDLYDPDPDRPGKSYTRQGGFLYdADRFDAQFFGMSPRDAVAADPQQRLL 5305
                     89******************************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     le++wea+e+ag++p++l+gsr+gvf+Gv+++dy+a  a+ +++ e +++   +g+ + ++++gr++y++gl+Gp++tvdtACsSslv +h+av
     KIR61153.1 5306 LETSWEAFEHAGIDPATLRGSRTGVFTGVMYSDYGARLASGSAD-EYEGYL-GTGS-AGSIASGRVAYSFGLEGPALTVDTACSSSLVTLHLAV 5396
                     **********************************9877777777.588999.9999.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     q+lr+ge+d+alaGGv+++ tp a++ fs+++ l+pdgrckaf+++adG+ ++EGvG ++++rl+da
     KIR61153.1 5397 QALRAGECDLALAGGVTVMATPAAFVEFSRQRGLAPDGRCKAFAEGADGVAWAEGVGQLLVERLSDA 5463
                     *****************************************************************98 PP

  == domain 8  score: 0.3 bits;  conditional E-value: 0.47
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTH CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgsevkaspkavgavlanv 153 
                     + ++al+dagl p+e+d  +   +g  +G  ++ +a +a++  ++ +  ++p +vg+v +n+
     KIR61153.1 5499 VIRQALADAGLRPAEVDAVEahgTGTPLGDPIEAQALIATYG-QD-RPAGRPLWVGSVKSNI 5558
                     6789************77776668888888888664333333.33.3566667777644443 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.5   1.5   2.1e-61   1.9e-58       2     318 ..     559     867 ..     558     868 .. 0.97
   2 !  261.8   0.0   1.1e-80     1e-77       1     318 [.    2260    2575 ..    2260    2576 .. 0.97
   3 !  181.5   0.3   3.1e-56   2.7e-53       2     272 ..    4010    4288 ..    4009    4309 .. 0.93
   4 !  183.7   0.3   6.8e-57   6.1e-54       3     265 ..    5753    6023 ..    5752    6030 .. 0.96

  Alignments for each domain:
  == domain 1  score: 198.5 bits;  conditional E-value: 2.1e-61
                    EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHHHHH CS
  Acyl_transf_1   2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpeglldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGElAa 97 
                    f+f+GqG+Q  GMG+eL++  + fa  +++    +  +y+  + dv+   +   +++++++q  L+a+++al+ l +s Gvrp+ v+GHS+GE+Aa
     KIR61153.1 559 FLFTGQGAQRLGMGRELYERFPSFARCLDAVLAELDGHYDVPLRDVVWGSDADAVQRTEHAQALLFAIEVALFRLAESWGVRPDFVAGHSVGEIAA 654
                    9*********************************************************************************************** PP

                    HHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS.HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECCCEECTTC CS
  Acyl_transf_1  98 avvagalsseeallavvlrsrlmmqlagpgdmaavelaeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalvenvnvavhsp 193
                    a+vag  s+++a+  v+ r++lm+ l   g+maav  ++ e +      v +a++n+p++vv+sg ++a++++v++ s+ g++    +v+ a+hsp
     KIR61153.1 655 AHVAGVFSLADAAALVAARGQLMQALPEGGAMAAVRATPDEVRPVLSGAVGLAAVNGPQSVVVSGDHDAVAAVVAHFSALGRRTTGLRVSHAFHSP 750
                    ************************************************************************************************ PP

                    CCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCHHGGG-TCCC CS
  Acyl_transf_1 194 qvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlksaedvksat 289
                     ++++ d  ++    +    p+++  s+++ ++s+     aeywv  +  +vrfa+av++++  +  +fve+ p ++l  a+ +t        +a+
     KIR61153.1 751 LMEPMLDRFRAVAEGLSYGAPTIPVVSTVTGEPST-DWATAEYWVGHVMATVRFADAVRALRTRGVTTFVELGPDAVLSTAGPETTA------DAA 839
                    *******99988888**********9999888875.56789********************************************99......8** PP

                    CCCTEETTSS-HHHCHHHHHHHHHHCT-H CS
  Acyl_transf_1 290 lvGklkrdltdflvtflyllakahltgse 318
                     v+ ++rd  + + ++ + l+++h  g++
     KIR61153.1 840 FVPLMRRDRPE-VTELVTGLGRLHSHGVR 867
                    ***********.99999999999999886 PP

  == domain 2  score: 261.8 bits;  conditional E-value: 1.1e-80
                     EEEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T.TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTH CS
  Acyl_transf_1    1 vfvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe.glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlG 93  
                     vfvf+GqGsQ   MG++L+ t++ fa  ++++d a+++++g+s+ldvl ++p  + ld++++vqp L+a+++ala +++  G +p+av+GHS+G
     KIR61153.1 2260 VFVFPGQGSQYPHMGLDLYTTNPTFAHHLHACDTALQPHTGWSLLDVLHQTPDaPPLDRVDVVQPTLFALMTALARTWQHHGIHPDAVIGHSQG 2353
                     8************************************************9986589************************************** PP

                     HHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEEC CS
  Acyl_transf_1   94 ElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalven 185 
                     E+Aaa+ agal++  a++ +++rs+    l+g g+maa+ l  +++++    ++d+  a++nsp+ + is ++ +++ ++++ +++++ a++  
     KIR61153.1 2354 EIAAAHIAGALTLHQAAKIIAIRSKALHTLTGTGAMAAIPLppDTVTTDHPHHPDLHIAAHNSPHHTIISATPTTIDTIINHYQQHNINARKLP 2447
                     *****************************************8877888888******************************************* PP

                     CCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCC CS
  Acyl_transf_1  186 vnvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektl 279 
                     v +a+h p  + ++d l+ +ladi+p +p+++++s+t  +++++++l + yw++nlr+pv+ + +++++++t++   +e spH++l+  +++t+
     KIR61153.1 2448 VTYASHHPHTETLKDHLLTTLADITPTTPTIPFHSTT--HPHTTPTLNNHYWYDNLRQPVQLHTTITHLLNTGHTHYIETSPHPVLTTPIQHTI 2539
                     **********************************987..699**************************************************** PP

                     HHGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT-H CS
  Acyl_transf_1  280 ksaedvksatlvGklkrdltdflvtflyllakahltgse 318 
                     +      +at + +l+r++ +   ++  +la+ah+tg  
     KIR61153.1 2540 D--TTTTKATTIATLHRNQPA-PTQLAHALAHAHTTGLT 2575
                     *..78899999999*******.**************975 PP

  == domain 3  score: 181.5 bits;  conditional E-value: 3.1e-56
                     EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-T CS
  Acyl_transf_1    2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHS 91  
                     f+fsGqGsQ  GMG+eL++  ++faa ++r  e + +  +  +  v+ ++       lld++ f+qpa++a+++al+ ll+s G+rp++++GHS
     KIR61153.1 4010 FLFSGQGSQHPGMGRELYERHAVFAAELDRVCERMDARLDAPLRAVMFAAADtpeaALLDETRFAQPAIFALEVALFRLLESWGMRPDVLLGHS 4103
                     9********************************************9976654466799************************************ PP

                     THHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH..TT.E.EEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCE CS
  Acyl_transf_1   92 lGElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklrcqddvv.gavansprrvvisgsqealrelvervskegvgal 182 
                     +GElAaa+vag   + +a l v+ r rlm+++   g+m a+    ae+ e l++ d vv  a++n  + +v+sg ++a++e+ e ++++g++  
     KIR61153.1 4104 IGELAAAHVAGVFGLDDACLLVAERARLMQSVPARGAMVAIRAgaAEVAESLADRDGVVsIAAVNAADATVVSGDEAAVAEVAELWARRGRRTT 4197
                     ****************************************99988889999998887652789999**************************** PP

                     EECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCH.HHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCH CS
  Acyl_transf_1  183 venvnvavhspqvdaiadalasaladiaprkpkvakisstsldesserel.saeywvanlrspvrfaeavlsaaetiplvfveispHslll 272 
                     + +v+ a+hsp +dai  +     a +  r+p ++  s+ + +++++ +l + +yw + lr pvrf++ ++++++ +  + +e+ p   l+
     KIR61153.1 4198 RLRVSHAFHSPHMDAILGEFHDVAARLDYRPPALPIVSASTGRPAEAAQLgDPRYWTDQLRLPVRFHDGMRAVRALGVTICLEVGPDGALT 4288
                     **************************************999999966555388****************************9999877666 PP

  == domain 4  score: 183.7 bits;  conditional E-value: 6.8e-57
                     EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TT CS
  Acyl_transf_1    3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSl 92  
                      fsGqGsQ  GMG  L++  + f+ ++++    f +  g s+ +++ +        ll ++  +qpaL+av++al+ ll+s Gv p+ ++GHS+
     KIR61153.1 5753 MFSGQGSQRPGMGSGLYAAHPEFRRALDEVCDRFDALLGRSLRELMFAPAGsreaDLLHETRYTQPALFAVEVALYRLLRSHGVVPDFLLGHSV 5846
                     59********************************************8776666668************************************** PP

                     HHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH...TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEE CS
  Acyl_transf_1   93 GElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklr.cqddvvgavansprrvvisgsqealrelvervskegvgalv 183 
                     GE Aaa+vag ls+++a l v++r+rlm +++g+g+m a++   +e++  l+  ++ v  a++n+p  +v+sg + a+  +v+++s++g+++++
     KIR61153.1 5847 GEFAAAHVAGVLSLADACLLVATRGRLMHEVSGNGAMVAIGAdpDEVRASLAgLEESVGIAAVNGPAGTVVSGDEVAVMSVVQQWSARGRRVKR 5940
                     ****************************************99777888888889999************************************* PP

                     ECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHH.HHHHHHHHCHCCHCCHHTTSSSECC-CCEEC CS
  Acyl_transf_1  184 envnvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsa.eywvanlrspvrfaeavlsaaetiplvfvei 265 
                       v+ a+hsp ++++ da ++   +++   p v+  s+++ d ++++ l a  ywv+ +  pv+fa+ v  + + + +vf+e+
     KIR61153.1 5941 LLVSHAFHSPLMAPMVDAFRAVAETLTFSAPVVPIVSTVTGDFADPQALAApGYWVDQVLRPVLFAQGVETLYQAGARVFLEL 6023
                     *********************9999***********************99846***************************997 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2       1.1   9.7e+02       7      40 ..    1254    1289 ..    1251    1310 .. 0.78
   2 !   68.2   0.0   8.9e-22   7.9e-19       2     179 ..    1375    1546 ..    1374    1547 .. 0.88
   3 !  185.1   1.5   1.2e-57   1.1e-54       1     180 []    3099    3278 ..    3099    3278 .. 0.98
   4 !  193.8   1.6   2.6e-60   2.3e-57       1     179 [.    4846    5024 ..    4846    5025 .. 0.97
   5 !  190.3   1.5   3.1e-59   2.8e-56       1     179 [.    6577    6755 ..    6577    6756 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.1
                  TTTSHHHHHHHHHHHHH..HS-EEEEE-SS..--HH CS
          KR    7 GGlGgLGlelarwlaek..garhlvllsRsaaaded 40  
                  G + +L+ +  rwlae+  ga++lv+++R a a+ d
  KIR61153.1 1254 GQVTALADSARRWLAEErfGASRLVVVTRGAVATTD 1289
                  5678899999*****86448*********9654444 PP

  == domain 2  score: 68.2 bits;  conditional E-value: 8.9e-22
                  EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TT CS
          KR    2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklle 98  
                  +++++GG G  G  + +  a +g r+lvl +R +     ++  +ael+a+g++v+vv+ ++sd++ v+all+++  e+pp + v+   g + d++ +
  KIR61153.1 1375 VVVLVGGDGPAGPIVQQLTAGHGIRRLVL-GRAPG---VAAPDTAELTASGVTVTVVPDEISDRAGVAALLAAVAPEHPPTAVVFI--GDAGDGPPA 1465
                  67899*********************985.99943...3334689******************************99999887775..556677776 PP

                  T--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   99 emtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                     a++  ++ +   + aw+Lh l e ++l  fvl+  ++g+lg++g ++ aa+ afl+ala++rr++gl+a+si wg+w+
  KIR61153.1 1466 GGAADRAGAASHLQPALAWHLHDLAEGTDLRAFVLLGPAGGILGTPGGGDRAATGAFLEALARHRRARGLAALSIGWGPWR 1546
                  666666666666666779**************************************************************8 PP

  == domain 3  score: 185.1 bits;  conditional E-value: 1.2e-57
                  SEEEEETTTSHHHHHHHHHHH.HHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR    1 gtylitGGlGgLGlelarwla.ekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96  
                  gt+litGG+G +G +lar+l+ ++g r+l+l+sR++ a + + al +el a ga+v+v+a+D +d++a++ ll+++ ae+ p++  +h+Agvl+d+ 
  KIR61153.1 3099 GTVLITGGTGTIGAHLARHLVtAHGVRRLLLTSRRGIAADGAGALRDELVAAGADVTVAACDTADREALAGLLAAVPAEH-PLTALVHTAGVLEDGV 3194
                  89******************94589***********9999999*********************************9776.**************** PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BTT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwae 180 
                  l  +tae+ ++vl+pK ++aw+Lh+l+e+ +l  fvlfSS+ag++g++gq++YaaaN+f+Dala++rrs+glpa s++wglwae
  KIR61153.1 3195 LGALTAEQADAVLRPKADAAWHLHTLTEHLPLRSFVLFSSAAGIIGNPGQSTYAAANTFVDALAAHRRSRGLPADSLAWGLWAE 3278
                  **********************************************************************************86 PP

  == domain 4  score: 193.8 bits;  conditional E-value: 2.6e-60
                  SEEEEETTTSHHHHHHHHHHH.HHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR    1 gtylitGGlGgLGlelarwla.ekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96  
                  gt+l+tGG+G+LG  +ar+l+ ++g rhl+llsR++   + +++l ael+a+ga+v++va+D +d++a+  +l++++ + +p++ v+h+Agvl+d++
  KIR61153.1 4846 GTVLVTGGTGALGALVARHLVaRHGVRHLLLLSRRGGDAPGAQRLRAELAAQGADVTIVACDAADRAALGVALATVDPD-HPLTAVVHTAGVLADRT 4941
                  89******************83578***************************************************955.5**************** PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  ++++ta++l++vl+pKv++aw+Lhel++  +l  fvlfSS+ag+lg++gqanYaaaN+ lDala++r+++gl+a+s+ wg+w 
  KIR61153.1 4942 FTNLTADRLDAVLRPKVDAAWHLHELTAAMDLAAFVLFSSVAGTLGTPGQANYAAANTGLDALAHHRSARGLAATSLVWGPWP 5024
                  **********************************************************************************5 PP

  == domain 5  score: 190.3 bits;  conditional E-value: 3.1e-59
                  SEEEEETTTSHHHHHHHHHHHH.HHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR    1 gtylitGGlGgLGlelarwlae.kgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96  
                  gt+l+tGG+G+LG  +ar+la+ +g rhl+l+sRs+aa + +++l+ el +lg++ +vva+Dv+d+++++ +l++i a + p++ vih+Agvl+d++
  KIR61153.1 6577 GTVLVTGGTGALGALVARHLARrHGVRHLLLVSRSGAAAAGADELVGELDRLGTRATVVACDVADRESLAGVLASIPAAH-PLTAVIHTAGVLDDAT 6672
                  89*******************6377***************************************************9665.**************** PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  l  +t  ++++vl+pK ++aw+Lhel++      fvlfSS++g+lg agq+nYaaaNaflDalae+rr++glpavs++wg+wa
  KIR61153.1 6673 LPALTPHRVDTVLRPKADAAWHLHELTAGLGRTRFVLFSSVSGVLGGAGQGNYAAANAFLDALAEHRRALGLPAVSLAWGIWA 6755
                  **********************************************************************************7 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.5   0.4   9.8e-48   8.8e-45       1     117 [.     293     408 ..     293     409 .. 0.99
   2 !  145.0   0.8   1.1e-45   9.6e-43       1     117 [.    1991    2106 ..    1991    2107 .. 0.98
   3 !  153.3   0.2   2.8e-48   2.5e-45       1     117 [.    3739    3856 ..    3739    3857 .. 0.99
   4 !  151.0   0.3   1.4e-47   1.2e-44       1     117 [.    5471    5588 ..    5471    5589 .. 0.98

  Alignments for each domain:
  == domain 1  score: 151.5 bits;  conditional E-value: 9.8e-48
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      +av++gsavn+dga+n+ltapng +q+r+i+++laea+++p+dvd++eahgtgt+lgDpiE+eal +++g+++ kqpl++gS+KsniGH++aAa
       KIR61153.1 293 LAVVRGSAVNQDGASNGLTAPNGPSQERLIRQVLAEARLAPADVDVMEAHGTGTTLGDPIEAEALLATYGQDR-KQPLWLGSIKSNIGHTQAAA 385
                      69*********************************************************************99.99****************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      Gva++ik+++a++hgv+p+tl++
       KIR61153.1 386 GVAGIIKMIQAMHHGVLPKTLHV 408
                      **********************8 PP

  == domain 2  score: 145.0 bits;  conditional E-value: 1.1e-45
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GG CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHlea 92  
                       +av+++savn+dg + +l apng aq+r+i++al +ag++p+dvd veahgtgt+lgDpiE++al +++g+++ +qpl++gS+Ksn+GH+ +
       KIR61153.1 1991 LAVVRASAVNQDGTTSQLSAPNGPAQQRVIRQALTTAGLTPTDVDAVEAHGTGTKLGDPIEAQALLATYGQNR-EQPLWLGSIKSNMGHAAG 2081
                       69*********************************************************************99.99**************** PP

                       GHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   93 AaGvaelikvvlalkhgvipptlnl 117 
                       AaGva++ik+++a++hgv+p+tl++
       KIR61153.1 2082 AAGVAGIIKMIQAIRHGVLPKTLHV 2106
                       ************************8 PP

  == domain 3  score: 153.3 bits;  conditional E-value: 2.8e-48
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       +av++g+avnsdg +n+ltapng +q+r+i++al++ag++p+dvd veahgtgtplgDpiE++al +++g+++r  +pl++gSvKsniGH++
       KIR61153.1 3739 LAVVRGTAVNSDGTSNGLTAPNGPSQQRVIRQALSTAGLTPDDVDAVEAHGTGTPLGDPIEAQALLATYGRDRRaGEPLWIGSVKSNIGHAQ 3830
                       69*************************************************************************99*************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaG+a++ik+v+a++hg +p tl++
       KIR61153.1 3831 AAAGAAGVIKMVQAMRHGLLPRTLHV 3856
                       *************************8 PP

  == domain 4  score: 151.0 bits;  conditional E-value: 1.4e-47
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       +av++gsavnsdga+n+ltapng +q+r+i++ala+ag++p++vd veahgtgtplgDpiE++al +++g+++   +pl+vgSvKsniGH++
       KIR61153.1 5471 LAVVRGSAVNSDGASNGLTAPNGPSQQRVIRQALADAGLRPAEVDAVEAHGTGTPLGDPIEAQALIATYGQDRPaGRPLWVGSVKSNIGHAQ 5562
                       69**********************************************************************99*99*************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaGva++ik+v+al+hg++p tl+ 
       KIR61153.1 5563 AAAGVAGIIKTVQALRHGQLPRTLHA 5588
                       ************************96 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   6.4   1.9e-29   1.7e-26       1     296 [.     909    1175 ..     909    1177 .. 0.89
   2 !  184.6   4.3   2.7e-57   2.4e-54       1     296 [.    2617    2890 ..    2617    2892 .. 0.92
   3 !  148.3   0.6   3.1e-46   2.8e-43       1     292 [.    4373    4645 ..    4373    4650 .. 0.87
   4 !  170.6   1.3     5e-53   4.5e-50       1     297 [.    6119    6389 ..    6119    6390 .. 0.93

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 1.9e-29
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hpl+G  ++ ++d  +++  ++++a +pwL+ Hrv++ +vlP +++  ++l+A++++  +     ++++++++ l lp d p+++++++ p+ed a 
  KIR61153.1  909 HPLVGNAMELPDDAGRIVTGEITAAAHPWLAAHRVHDVTVLPDTAFPDLVLAAGAEAGFDR----IEQLTVERLLPLPGDAPTRLHVTVAPHEDPAR 1001
                  9********************************************************9666....***************************88555 PP

                  ....EEEEEEE-SS-TT...EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE.-GGG.--EEEEEEETTEEEEEE- CS
       PS-DH   98 rawvefeifSregggee..wtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargley.GpsF.qglralwrgdgealaelr 190 
                     ++++++Sr g+ ++  wt+ at+ ++++++a+  + +++ +     +pa++++v++ ++ +rl  +gl   G+ F  gl a+wr+ +  +ae+r
  KIR61153.1 1002 ---ARVTVHSRVGDHADqpWTRCATAVLAVGADAD--PGTATPW-----PPADATPVDVGDLADRL--TGLGRdGDGFlAGLVAAWRSGDTGYAEVR 1086
                  ...9*********99999***********998766..5555555.....555555588888999**..5544447777256**************** PP

                  --GGGSSTTTT-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEESEE CS
       PS-DH  191 lpeelaggesayvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieglr 287 
                  lp+++ gg   y+l+P l+ +al +     +   e a+++    ++e ++v r   ++ +el+v  ++++ +    +a++ + d++G vv +i  + 
  KIR61153.1 1087 LPDDAPGG---YLLDPRLMQVALVAA----G---EPAEQLWTAAGWEDVTVVR---PGVRELRVALTRTAPD----RASVLVSDASGAVVSTIGAVV 1166
                  ****9977...*******98888755....3...89****************8...88999*******9998....89******************* PP

                  EEE--XXXX CS
       PS-DH  288 lrrvereal 296 
                  lr++++++l
  KIR61153.1 1167 LRPLTADEL 1175
                  ****99876 PP

  == domain 2  score: 184.6 bits;  conditional E-value: 2.7e-57
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hp++G r+++++d+  +f  ++++a +pwL+DH+v+++v+lPg+++l + l Aa++l     + ++++++++++lvlp++++++++++  pe dg+ 
  KIR61153.1 2617 HPFVGGRLDQPDDRGEIFVGQVSTALHPWLADHAVRDTVLLPGTAFLDLSLHAAERLG----STHVEELTLEHPLVLPDSGALRLHVATAPEPDGRH 2709
                  9*********************************************************....566*******************************9 PP

                  ....EEEEEEE-SS-TT...EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE--- CS
       PS-DH   98 rawvefeifSregggee..wtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealaelrlp 192 
                      +++++Sr +g+ +  wt+ha Gt++ +++ +      +a+ + +++p+ +++v  ++fY  la+ g+ yGp+F+glr +w+  ++ +ae++lp
  KIR61153.1 2710 ----TVTVHSRPAGDPDhpWTRHAVGTISGDAHGT------PAVLDGAWPPPGAQPVRLDQFYGDLADLGYLYGPTFRGLRGAWQAGDAFYAEVELP 2796
                  ....***********99************776666......777788899999999***************************************** PP

                  GGGSSTTTT-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEESEEEE CS
       PS-DH  193 eelaggesayvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieglrlr 289 
                  e+++++   + +hPallDaal++ a+ +   + +++ ++lP++++ ++++      ++  + ++r+++ +  +i++ l++ d +Gr+v+++  lrlr
  KIR61153.1 2797 EQADPDG--FTVHPALLDAALHTTAVGV-NLDPAQTPVRLPFSWSDVTLHA-----TGATRLRVRTTRVD--DITVALDMADGTGRPVLTVARLRLR 2883
                  **99665..*************765555.45799****************6.....44567777777776..79*********************** PP

                  E--XXXX CS
       PS-DH  290 rvereal 296 
                   ++ ++l
  KIR61153.1 2884 ELDPGQL 2890
                  9987765 PP

  == domain 3  score: 148.3 bits;  conditional E-value: 3.1e-46
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  h+ll +  + a++  ++ + r++ + +pwL++H v+g +++Pg ++l +a+ + r + g     ++ +++++++lvlp+++pv++q+++   +   +
  KIR61153.1 4373 HELLKATTSLADNGGWLLSGRVSRSTHPWLAEHTVNGAALVPGSVFLDIAVHVTRTVGG----ARVDELTMESPLVLPPQGPVDLQVTVSGPDPRGV 4465
                  8899788888899999************************************9999994....56************************97744443 PP

                  ....EEEEEEE-SS-TT.......EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEE CS
       PS-DH   98 rawvefeifSregggee......wtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealae 188 
                      + +++Sr+++ ++      wt+h++Gt++ +e+      + + + +++++p+++++++ + +Ye+la +g+eyGp+Fqglr +wr+ + ++ e
  KIR61153.1 4466 ---RSLTVSSRAAAPDDpagerpWTRHVSGTLSDRETG-----AFTGF-PAAWPPPDAEPIDLDGLYEALAGTGIEYGPAFQGLRGAWRDGSTVYTE 4553
                  ...699999999999999999************44443.....45666.5556666777788888******************************** PP

                  E---GGGSSTTTT-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEES CS
       PS-DH  189 lrlpeelaggesayvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieg 285 
                  + +p+  +++     lhPal+Daa+++laa      ++ ++  lP+a+  ++ y   +   + + +++rl+ +g +  +  l ++d  G +v+ +e+
  KIR61153.1 4554 AVAPDGGTADG----LHPALVDAAMHALAANH-PSLSSGTEILLPFAWRGIDAYS--W---HAAAIRSRLTVTGPD--TLALAVTDTGGVPVMAVEE 4638
                  ****9999875....***********997766.5689*****************7..3...447888888888876..5667788************ PP

                  EEEEE-- CS
       PS-DH  286 lrlrrve 292 
                  l +rrv+
  KIR61153.1 4639 LLVRRVP 4645
                  *****97 PP

  == domain 4  score: 170.6 bits;  conditional E-value: 5e-53
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hp+lG+  + + d   +f  r++++++pwL+DH+v+g+ v+P+ + le++l +++q      +  +++++++++lvlp+ ++v vql+  p+ d+a 
  KIR61153.1 6119 HPFLGAGTELP-DGGSLFTGRISVESQPWLADHAVHGSGVVPASALLELILYVGEQSG----CDLVEELTVSTPLVLPDAGAVHVQLVTGPA-DEAG 6209
                  9****999998.99999**************************************999....556***************************.6666 PP

                  ....EEEEEEE-SS-TT.EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE---GG CS
       PS-DH   98 rawvefeifSregggeewtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealaelrlpee 194 
                    + +++i+Sr++g+  w+ h +G v+ a +a+     ++ +   +++pa +++v++ae+Yerla+ g+ yGp+F+glr++wr  +e+ ae+rl  +
  KIR61153.1 6210 --RRTVTIRSRAAGDP-WVGHGQGIVAPASAAE-----PPGVAGGAWPPAGATPVDVAELYERLADLGFGYGPAFRGLRNAWRHGDEVSAEVRLHGA 6298
                  ..469**********9.**********876666.....889999999999999******************************************99 PP

                  GSSTTTT-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEESEEEEE- CS
       PS-DH  195 laggesayvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieglrlrrv 291 
                    +g   +++hPallDaal+++a+a+  + + +  + +P+a++ ++v+    aa ++l+v+   +++g     + l+l de+G++va i+ l++r++
  KIR61153.1 6299 PVPG---FRIHPALLDAALHTIAIAY-RDLDPEAGVPVPFAWSGVSVRA---AAPDSLRVRLAPAGSG-----FALRLSDEAGNPVAAIDSLSVRQL 6383
                  8866...***************9***.5678999999**********97...6677799998888887.....89********************** PP

                  -XXXXX CS
       PS-DH  292 ereals 297 
                   +++l+
  KIR61153.1 6384 AAGQLQ 6389
                  998876 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   5.8e-19   5.2e-16       1     112 []     411     528 ..     411     528 .. 0.84
   2 !   65.1   0.0   7.9e-21   7.1e-18       1     112 []    2109    2226 ..    2109    2226 .. 0.95
   3 ?   -0.8   0.1       2.3     2e+03      60     104 ..    2416    2459 ..    2399    2463 .. 0.77
   4 !   45.6   0.0   9.2e-15   8.3e-12       1     109 [.    3859    3976 ..    3859    3979 .. 0.85
   5 !   46.3   0.0   5.3e-15   4.7e-12       3     103 ..    5593    5706 ..    5592    5715 .. 0.89

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 5.8e-19
  KAsynt_C_assoc   1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekr.keeskeeslprLlvlsgrteeaveallekleehlld..a 88 
                     P p+++ +++g++++ tep +wp++     ++++sfG++G+n+HviL++++  ++ +++ + + +p  ++lsgr++ea++a +++l++ l++  +
      KIR61153.1 411 PTPHVD-WTTGNIQLLTEPQQWPDQGrprrAAISSFGISGTNAHVILEQAPAVTEeAPAGDGATTPVPWALSGRSPEALHAHAAALRALLDTlpD 504
                     99****.***************99888999********************95544044455799*************************777224 PP

  KAsynt_C_assoc  89 ellsllneilseeisrlpyRGyav 112
                      +l+ +  +l+++++ l+yR+ +v
      KIR61153.1 505 GDLAAAGRALATDRAALTYRAVVV 528
                     5555666677777777****9886 PP

  == domain 2  score: 65.1 bits;  conditional E-value: 7.9e-21
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk..eeslprLlvlsgrteeaveallekleehlld 87  
                      P p+++ +++g + + tep +wp++     ++v+sfG++G+n+H+iL++++ ++++++++  ++++p  ++ls++t+ a+++ +++l +hl +
      KIR61153.1 2109 PTPHVD-WTTGAVALLTEPQQWPDQGrprrAAVSSFGISGTNAHIILEQAPPATTPTDAQpaDQDTPVTWMLSAKTPTALHTHAQRLLHHLTT 2200
                      99****.***************99888999*********************8888887777899***************************** PP

  KAsynt_C_assoc   88 aellsllneilseeisr.lpyRGyav 112 
                      +++l+ ++++++ ++++ l +R+ +v
      KIR61153.1 2201 HPELTAADTAAALATRTlLSHRAAIV 2226
                      **************999999999876 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 2.3
  KAsynt_C_assoc   60 lprLlvlsgrteeaveallekleehlldaellsllneilseeisr 104 
                      +p+  ++s+ t+  ++++++++++h+ +a +l +++  ++ ++++
      KIR61153.1 2416 SPHHTIISA-TPTTIDTIINHYQQHNINARKLPVTYASHHPHTET 2459
                      555555555.7999****************999998888777766 PP

  == domain 4  score: 45.6 bits;  conditional E-value: 9.2e-15
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk.....eeslprLlvlsgrteeaveallekleeh 84  
                      P p+++ ++ g +++ t   pwp++      +v++fG++G+n+Hv+L+  ++  +++  +        lp  ++lsgrt++av a++ +l+e+
      KIR61153.1 3859 PTPHVD-WSAGAVRLLTADRPWPETGgprrCAVSAFGISGTNAHVVLEWDPTVAAEPVVSgprpePGGLPVPWLLSGRTAAAVAAQAGRLAEQ 3950
                      99****.****************9999999*********************666666555556667789************************ PP

  KAsynt_C_assoc   85 lldaellsllneilseeisr.lpyRG 109 
                      l  +++l+ ++   s + +    yR+
      KIR61153.1 3951 LTGHPELHPVDVGGSLAARAaQRYRA 3976
                      99999999888776666555455665 PP

  == domain 5  score: 46.3 bits;  conditional E-value: 5.3e-15
  KAsynt_C_assoc    3 peipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk..........eeslprLlvlsgrteeaveallekl 81  
                      p+++ +  g + V +e+  wp++     ++v++fG++G+n+HviL++++ ++++++++           ++    ++ls+r+e+a+ a++++l
      KIR61153.1 5593 PHVD-WGAGDVAVLREARAWPEHDgprrAAVSAFGISGTNAHVILEAAEDAREAPDPHveaplpadraGDPVVVPWLLSARSEAALAAQADRL 5684
                      8999.9****************99999**********************99999999999999999766777777789*************** PP

  KAsynt_C_assoc   82 eehlldaellsllneilseeis 103 
                      ++  + ++ l+ ++ + s +++
      KIR61153.1 5685 RAFVRADPALDPADVARSLATR 5706
                      ***9999999988887777665 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   1.9e-14   1.7e-11       3      67 .]    1646    1711 ..    1644    1711 .. 0.94
   2 !   47.0   0.0   2.6e-15   2.4e-12       5      67 .]    3389    3452 ..    3386    3452 .. 0.92
   3 !   43.5   0.0   3.4e-14   3.1e-11       2      67 .]    5122    5188 ..    5121    5188 .. 0.93
   4 !   43.3   0.0   3.8e-14   3.4e-11       3      67 .]    6862    6927 ..    6860    6927 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 1.9e-14
  PP-binding    3 lrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +++ +a vlg  ++ +i+p+ +l +lG+DSl+av l ++l+e+ ++++p + lf++pt  ++aa+l
  KIR61153.1 1646 VLTQIAAVLGHeNPGSIAPTRPLQELGFDSLTAVGLRNRLQEATQLTLPATLLFDYPTATAMAAHL 1711
                  7888999999868888************************************************97 PP

  == domain 2  score: 47.0 bits;  conditional E-value: 2.6e-15
  PP-binding    5 elvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  + va vlg   ++++d+  ++ dlG+DSl+avel ++++++ g+++p + +f+hpt+++la++l
  KIR61153.1 3389 AHVAAVLGHgQPDALDAARSFKDLGFDSLTAVELRNRMNAATGLRLPATLVFDHPTIESLADRL 3452
                  5689999997667799*********************************************976 PP

  == domain 3  score: 43.5 bits;  conditional E-value: 3.4e-14
  PP-binding    2 klrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  ++ + va+vlg  ++ +i++d  + +lG+ Sl+a++l ++l++e g ++p + +f++p++a+laayl
  KIR61153.1 5122 AVSRHVATVLGHdDDADIAADREFNELGFTSLTAIDLRNRLSAETGHRLPATLVFDYPNPAALAAYL 5188
                  577889*****9556669***********************************************97 PP

  == domain 4  score: 43.3 bits;  conditional E-value: 3.8e-14
  PP-binding    3 lrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  l + +a +lg  ++  id+d  + +lG+DSl+a+el ++l+e  g+++p ++lf++pt++ laa+l
  KIR61153.1 6862 LHQEMAVALGHrETATIDLDRGFLELGFDSLTALELRNRLSEVAGWRLPATTLFDYPTPRKLAARL 6927
                  5566777777548888***********************************************975 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.58   5.2e+02       2      75 ..    1375    1448 ..    1374    1462 .. 0.88
   2 !   34.9   0.1   1.1e-11   9.8e-09       2     161 ..    3100    3259 ..    3099    3266 .. 0.84
   3 !   40.8   0.2   1.8e-13   1.6e-10       2     161 ..    4847    5006 ..    4846    5015 .. 0.88
   4 !   39.7   0.0   3.8e-13   3.4e-10       2     161 ..    6578    6737 ..    6577    6743 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.58
                  EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH CS
   adh_short    2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl 75  
                  vv+ +G+++  G  + +  a  G++ +v++r +  ++   +el + g ++++++  ++dr+ v al+++++ ++
  KIR61153.1 1375 VVVLVGGDGPAGPIVQQLTAGHGIRRLVLGRAPGVAAPDTAELTASGVTVTVVPDEISDRAGVAALLAAVAPEH 1448
                  6888888888888888888999**************999****************************9998776 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 1.1e-11
                  EEEEESTTSHHHHHHHHHHHH.TT-EEEE.EESC...HHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    2 vvlvtGassGIGraiakelak.eGakvvv.vdrs...eekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                  +vl+tG+++ IG  +a++l++  G++ ++ ++r+   ++ + ++ +el ++ga+++++++D +dre++  l++++ +++ +l +Lv+ AG+ ++g  
  KIR61153.1 3100 TVLITGGTGTIGAHLARHLVTaHGVRRLLlTSRRgiaADGAGALRDELVAAGADVTVAACDTADREALAGLLAAVPAEH-PLTALVHTAGVLEDGVL 3195
                  69*****************96258888884544422134555666777777************************8886.8**************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltr 161 
                    l++e+ ++v+     ++ +l  + ++++      + v  sS ag  +++g++ Y+A+  +v++l+ 
  KIR61153.1 3196 GALTAEQADAVLRPKADAAWHLHTL-TEHLP---LRSFVLFSSAAGIIGNPGQSTYAAANTFVDALAA 3259
                  *****************99887654.66655...346899*******************999998875 PP

  == domain 3  score: 40.8 bits;  conditional E-value: 1.8e-13
                  EEEEESTTSHHHHHHHHHHH.HTT-EEEE.EESCHHH...HHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    2 vvlvtGassGIGraiakela.keGakvvv.vdrseek...leevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                  +vlvtG+++ +G  +a++l+ + G+++++ ++r+  +   ++++ +el ++ga+++++++D +dr+++  +++++  +  +l ++v+ AG+  +++f
  KIR61153.1 4847 TVLVTGGTGALGALVARHLVaRHGVRHLLlLSRRGGDapgAQRLRAELAAQGADVTIVACDAADRAALGVALATVDPD-HPLTAVVHTAGVLADRTF 4942
                  79***************9962679999997777655422257788889988***********************9555.69**************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltr 161 
                   +l++++ ++v+   + ++ +l ++ + + +    ++ v  sSvag  + +g+a Y+A+  ++++l++
  KIR61153.1 4943 TNLTADRLDAVLRPKVDAAWHLHELTAAM-D---LAAFVLFSSVAGTLGTPGQANYAAANTGLDALAH 5006
                  *******************9998875555.5...8999************************999986 PP

  == domain 4  score: 39.7 bits;  conditional E-value: 3.8e-13
                  EEEEESTTSHHHHHHHHHHHH.TT-EEEE.EESCHHHHH...HHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    2 vvlvtGassGIGraiakelak.eGakvvv.vdrseekle...evakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                  +vlvtG+++ +G  +a++la+  G+++++ v+rs ++++   e++ el ++g++a+++++Dv+dre++  +++ + +   +l ++++ AG+  +++ 
  KIR61153.1 6578 TVLVTGGTGALGALVARHLARrHGVRHLLlVSRSGAAAAgadELVGELDRLGTRATVVACDVADRESLAGVLASIPA-AHPLTAVIHTAGVLDDATL 6673
                  79*****************97369999997888876654111556666666***********************965.579**************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltr 161 
                    l+  +++ v+     ++ +l ++ +       + r v  sSv g  + ag+  Y+A+ a++++l++
  KIR61153.1 6674 PALTPHRVDTVLRPKADAAWHLHELTAGL----GRTRFVLFSSVSGVLGGAGQGNYAAANAFLDALAE 6737
                  *********************99998877....899*************************9999986 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   1.1e-08   9.9e-06      69     117 ..     193     239 ..     175     260 .. 0.85
   2 !   21.6   0.1   1.3e-07   0.00012      75     113 ..    1895    1933 ..    1876    1951 .. 0.89
   3 !   26.4   0.1   4.5e-09   4.1e-06      70     117 ..    3640    3685 ..    3621    3699 .. 0.85
   4 !   27.6   0.1   1.9e-09   1.7e-06      57     117 ..    5359    5417 ..    5350    5434 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.1e-08
                 HTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N  69 kagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117
                 + g+  e pa+ v+ +csS+l a++la+q+++ ge+d ++agGv  m +
  KIR61153.1 193 AFGF--EGPAISVDTACSSSLVALHLAVQALRNGECDLALAGGVTVMAT 239
                 5555..7799**********************************99975 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 1.3e-07
                  TSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEE CS
  Thiolase_N   75 evpavtvnkvcsSglkavalaaqsiaageadvvvagGvE 113 
                  e pa+ ++ +csS+l a++la+q++++ge+d ++agGv 
  KIR61153.1 1895 EGPAISLDTACSSSLVALHLAVQALRSGECDLALAGGVS 1933
                  568999*******************************96 PP

  == domain 3  score: 26.4 bits;  conditional E-value: 4.5e-09
                  TTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N   70 agipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117 
                   g+  e p++tv+ +csS+l a++la+q+++ ge++ +vagGv  m +
  KIR61153.1 3640 FGF--EGPTMTVDTACSSSLVALHLAVQALRNGECELAVAGGVAVMAA 3685
                  455..7799**********************************99975 PP

  == domain 4  score: 27.6 bits;  conditional E-value: 1.9e-09
                  TSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N   57 gegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117 
                   +g++ +  +a   g+  e pa tv+ +csS+l +++la+q+++age+d ++agGv  m +
  KIR61153.1 5359 SAGSIASGRVAYSFGL--EGPALTVDTACSSSLVTLHLAVQALRAGECDLALAGGVTVMAT 5417
                  5666777777888888..89************************************99975 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.3     2e-06    0.0018       1     116 [.    3101    3235 ..    3101    3253 .. 0.69
   2 !   16.8   0.4   4.1e-06    0.0037       1     115 [.    4848    4981 ..    4848    4998 .. 0.74
   3 !   17.5   0.3   2.4e-06    0.0022       1      75 [.    6579    6668 ..    6579    6723 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2e-06
                  EEEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTT.TCHHCHHC...........EEEE--TT-HHHHHHHH....HHHT-SEEEE--S..---H CS
   Epimerase    1 ilVtGatGfiGsalvkallekg.ye.vigldrlssas.ntarledl...........elveldltdrsalerlf....keeqpdavihlAa..vggv 77  
                  +l+tG+tG iG++l+++l +++ ++ ++  +r+  a    ++   l           ++  +d  dr+al+ l+    +e+  +a +h A+  + gv
  KIR61153.1 3101 VLITGGTGTIGAHLARHLVTAHgVRrLLLTSRRGIAAdGAGA---LrdelvaagadvTVAACDTADREALAGLLaavpAEHPLTALVHTAGvlEDGV 3194
                  79****************987766635555555332202223...144589*****************77665511116778889999998532333 PP

                  ..HHHHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEG CS
   Epimerase   78 ..aassedpadfieknlqgtlnlleaarkagvkrllflsSs 116 
                    a ++e++ ++++  +  +++l        ++ ++ +sS+
  KIR61153.1 3195 lgALTAEQADAVLRPKADAAWHLHTLTEHLPLRSFVLFSSA 3235
                  22456677777777777777777777777777777777773 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 4.1e-06
                  EEEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHHT-S....EEEE--S.---HH... CS
   Epimerase    1 ilVtGatGfiGsalvkallekg.ye.vigldrlssasntarledl.........elveldltdrsalerlfkeeqpd....avihlAa.vggva... 78  
                  +lVtG+tG +G+ ++++l +++ ++ ++ l+r+  + + a++ ++         ++v +d  dr+al  ++++++pd    av+h A+  ++     
  KIR61153.1 4848 VLVTGGTGALGALVARHLVARHgVRhLLLLSRRGGDAPGAQRLRAelaaqgadvTIVACDAADRAALGVALATVDPDhpltAVVHTAGvLADRTftn 4944
                  79****************99887555888888865555444433368******************99999998888744447999998555433100 PP

                  HHHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEE CS
   Epimerase   79 assedpadfieknlqgtlnlleaarkagvkrllflsS 115 
                   ++++  ++++  +  +++l e   + ++  ++ +sS
  KIR61153.1 4945 LTADRLDAVLRPKVDAAWHLHELTAAMDLAAFVLFSS 4981
                  3444555667777788888888888888888888887 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 2.4e-06
                  EEEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHHH....HT-SEEEE--S-- CS
   Epimerase    1 ilVtGatGfiGsalvkallekg.yevigldrlssasntarledl..........elveldltdrsalerlfke....eqpdavihlAavg 75  
                  +lVtG+tG +G+ ++++l++++ ++ + l ++s a + +++e +          ++v +d+ dr++l+ ++++    +  +avih A+v 
  KIR61153.1 6579 VLVTGGTGALGALVARHLARRHgVRHLLLVSRSGAAAAGADELVgeldrlgtraTVVACDVADRESLAGVLASipaaHPLTAVIHTAGVL 6668
                  79****************99987775555555455554544444999******************8777765422216789999998843 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   9.8e-06    0.0088       1      74 [.    3102    3174 ..    3102    3185 .. 0.78
   2 !   11.8   0.0   0.00013      0.11       1      77 [.    4849    4924 ..    4849    4936 .. 0.83
   3 !   14.8   0.0   1.5e-05     0.014       1      74 [.    6580    6652 ..    6580    6667 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.8e-06
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev 74  
                     LiTG++G iG++la++L++  + v  +   s    ++  +   +d+ + +  ++++  +D  D+++l  lla v
     KIR61153.1 3102 LITGGTGTIGAHLARHLVTA-HGVRRLLLTSRRGIAADGAGALRDELVAAGADVTVAACDTADREALAGLLAAV 3174
                     9*****************98.4455554455555455555555667788889**************99999876 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00013
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-S CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpd 77  
                     L+TG++G  G+ +a++L++++   h +       ++   ++l+ +  +    +++++ +D  D+++l  +la v+pd
     KIR61153.1 4849 LVTGGTGALGALVARHLVARHGVRHLLLLSRRGGDAPGAQRLRAELAA-QGADVTIVACDAADRAALGVALATVDPD 4924
                     9******************98777777776677777778888765544.4679**********************99 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 1.5e-05
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev 74  
                     L+TG++G  G+ +a++L +++   h +    s  +++  ++l  +   +l ++ +++ +D+ D++sl  +la++
     KIR61153.1 6580 LVTGGTGALGALVARHLARRHGVRHLLLVSRSGAAAAGADELVGEL-DRLGTRATVVACDVADRESLAGVLASI 6652
                     9*****************9977777766666667777778887655.56899****************999886 PP

>> Docking  Erythronolide synthase docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   8.1   3.1e-12   2.8e-09       3      26 .]       4      27 ..       4      27 .. 0.99

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 3.1e-12
     Docking  3 EeKLRdYLKRvTaDLrqtRrRLrE 26
                EeKLR+YLKRvTaDL+ tR RL+E
  KIR61153.1  4 EEKLREYLKRVTADLQTTRARLQE 27
                9**********************9 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00033       0.3       1      36 [.    3101    3137 ..    3101    3187 .. 0.76
   2 !    9.1   0.0   0.00069      0.62       1      85 [.    4848    4934 ..    4848    4980 .. 0.80
   3 !   14.4   0.0   1.7e-05     0.016       1      85 [.    6579    6665 ..    6579    6669 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00033
                       EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHH CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk.kpkkiillerdElkl 36  
                       vl+tG++G+iG +l r++++   +++++l +r   + 
       KIR61153.1 3101 VLITGGTGTIGAHLARHLVTAhGVRRLLLTSRRGIAA 3137
                       89***************99876899999999876655 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00069
                       EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-S....EEEE-- CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvd....vvfhaA 85  
                       vlvtG++G++G  + r+++++  +++++ll+r        ++ l++el+++    +++ v +d +d++ l  al ++++d    +v+h+A
       KIR61153.1 4848 VLVTGGTGALGALVARHLVARhGVRHLLLLSRRGGDAPGAQR-LRAELAAQGA--DVTIVACDAADRAALGVALATVDPDhpltAVVHTA 4934
                       89***************9887699*******98877665544.4455555555..44467899999999999888877762222466655 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1.7e-05
                       EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT......T-SEEEE-- CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekalee....lkvdvvfhaA 85  
                       vlvtG++G++G  + r+++++  +++++l++r+  +    ++ +  el+  +l ++ ++v +dv+d+e+l+ +l +    +   +v+h+A
       KIR61153.1 6579 VLVTGGTGALGALVARHLARRhGVRHLLLVSRSGAAAAGADELV-GELD--RLGTRATVVACDVADRESLAGVLASipaaHPLTAVIHTA 6665
                       89****************999799*********99988877755.4555..5777778999********998886411114556677776 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.3    0.0028       2.5       1      49 [.    3103    3151 ..    3103    3166 .. 0.86
   2 !   14.5   0.3   1.6e-05     0.014       1     136 [.    4850    4981 ..    4850    5012 .. 0.68
   3 !    6.5   0.1    0.0046       4.1       1      46 [.    6581    6626 ..    6581    6669 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0028
                     EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHHHHHHHHHHHT-SS- CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaksgesaeeRleeelekke 49  
                     +TG+TG +G++L + L++ +  v ++ l  R    ++++  l++el   +
     KIR61153.1 3103 ITGGTGTIGAHLARHLVTAHG-VrRLLLTSRRGIAADGAGALRDELVAAG 3151
                     8*****************997.7699999999988898888888887765 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.6e-05
                     EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTS.GGGG--HHHHHHHHHH--EEE CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlse.prlGLseedlqelaeevdvii 92  
                     +TG+TG LG+ + + L+ ++  v ++ ll R   ++ +++Rl++el+ +++           +++v+ D ++   lG+  ++++   + +++++
     KIR61153.1 4850 VTGGTGALGALVARHLVARHG-VrHLLLLSRRGGDAPGAQRLRAELAAQGAD----------VTIVACDAADrAALGVALATVDPD-HPLTAVV 4931
                     7******************97.77******************9999888775..........334444444313355554444443.4566666 PP

                     E--SS-...S.ST....TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE CS
  NAD_binding_4   93 hsaAtv...nfde....pykellrvNveGtrevlelakklkklkvllhvST 136 
                     h a+ +   +f++    +++ +lr+ v+++ ++ el +++    +++ +S+
     KIR61153.1 4932 HTAGVLadrTFTNltadRLDAVLRPKVDAAWHLHELTAAMDLA-AFVLFSS 4981
                     6665431112222222466666677777777777777766666.6666665 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0046
                     EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHHHHHHHHHHHT- CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaksgesaeeRleeele 46  
                     +TG+TG LG+ + + L r++  v ++ l+ R+   +++++ l  el+
     KIR61153.1 6581 VTGGTGALGALVARHLARRHG-VrHLLLVSRSGAAAAGADELVGELD 6626
                     7*****************997.7688888898888887777766555 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.6    0.0033       2.9       1      65 [.    3101    3174 ..    3101    3194 .. 0.79
   2 !   10.5   0.4   0.00037      0.33       1      66 [.    4848    4922 ..    4848    4930 .. 0.80
   3 !   10.2   0.5   0.00044       0.4       1      63 [.    6579    6650 ..    6579    6665 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0033
                  EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S........-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHTT- CS
        NmrA    1 IlviGaTGrqGksvvrallkaghkvralvRdt........kselakslkeaGvelv..kgdlddkeslvealkgv 65  
                  +l++G+TG +G++++r+l+ a h vr l+  +         + l ++l +aG+ +   + d+ d+e l+ +l  v
  KIR61153.1 3101 VLITGGTGTIGAHLARHLVTA-HGVRRLLLTSrrgiaadgAGALRDELVAAGADVTvaACDTADREALAGLLAAV 3174
                  79***************9985.44444443333688998888888999999975432588999999998887765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00037
                  EEESSTTSHHHHHHHHHHHH.HT-EEEEEES-S........-SHHHHHHHHST..TEEEES-TT-HHHHHHHHTT-S CS
        NmrA    1 IlviGaTGrqGksvvrallk.aghkvralvRdt........kselakslkeaG..velvkgdlddkeslvealkgvd 66  
                  +lv+G+TG++G+ v+r+l++ +   vr l+  +         + l ++l+++G  v++v+ d+ d++ l  al +vd
  KIR61153.1 4848 VLVTGGTGALGALVARHLVArH--GVRHLLLLSrrggdapgAQRLRAELAAQGadVTIVACDAADRAALGVALATVD 4922
                  79***************99844..45444433334698898788888899999445778**********99999987 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00044
                  EEESSTTSHHHHHHHHHHHH.HT-EEEEEES-S......-SHHHHHHHHST..TEEEES-TT-HHHHHHHHT CS
        NmrA    1 IlviGaTGrqGksvvrallk.aghkvralvRdt......kselakslkeaG..velvkgdlddkeslvealk 63  
                  +lv+G+TG++G+ v+r+l++ +g +   lv  +        el+ +l   G  +++v+ d+ d+esl+ +l 
  KIR61153.1 6579 VLVTGGTGALGALVARHLARrHGVRHLLLVSRSgaaaagADELVGELDRLGtrATVVACDVADRESLAGVLA 6650
                  79**************99986666666666666899999999*******99666899**********98876 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0059       5.3       3      33 ..     203     233 ..     201     254 .. 0.86
   2 !    8.2   0.1    0.0024       2.2       4      31 ..    1902    1929 ..    1899    1947 .. 0.87
   3 ?    5.2   0.7      0.02        18       3      29 ..    3649    3675 ..    3647    3685 .. 0.85
   4 ?   -0.3   0.1       1.1   9.6e+02      34      65 ..    3984    4016 ..    3968    4027 .. 0.77
   5 ?    4.6   0.2     0.032        29       3      34 ..    5381    5412 ..    5379    5446 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0059
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEE CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvig 33 
                  + +aCs+ ++al++A +++++g++  +L  g
   KIR61153.1 203 VDTACSSSLVALHLAVQALRNGECDLALAGG 233
                  578*******************999888655 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0024
                   E-GGGHHHHHHHHHHHHHHTTS-SEEEE CS
  ACP_syn_III    4 naaCsgfvyalsvAdaliesgaakrvLv 31  
                    +aCs+ ++al++A ++++sg++  +L 
   KIR61153.1 1902 DTACSSSLVALHLAVQALRSGECDLALA 1929
                   689******************9998886 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.02
                   EE-GGGHHHHHHHHHHHHHHTTS-SEE CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrv 29  
                   + +aCs+ ++al++A +++++g+++ +
   KIR61153.1 3649 VDTACSSSLVALHLAVQALRNGECELA 3675
                   678*******************87654 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.1
                   EEEGGGCS-TTT.HHHHTTB-EEEEEEEEEEES CS
  ACP_syn_III   34 aetlskilDwkd.rstavlfGDGAgAvvlease 65  
                   ae ls + D +d ++ta   G G++A++ + ++
   KIR61153.1 3984 AELLSALRDVADgSTTAEAAGAGGTAFLFSGQG 4016
                   678999*****97888889********999874 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.032
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEE CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLviga 34  
                   + +aCs+ ++ l++A +++++g++  +L  g 
   KIR61153.1 5381 VDTACSSSLVTLHLAVQALRAGECDLALAGGV 5412
                   5689******************9999886555 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.2   1.1e+03      28      49 ..     322     343 ..     306     399 .. 0.81
   2 ?    5.2   0.1     0.017        15      25      52 ..    2017    2044 ..    1990    2099 .. 0.62
   3 ?    4.4   0.0     0.031        28      26      48 ..    3766    3788 ..    3739    3846 .. 0.90
   4 ?    0.7   0.0      0.43   3.9e+02      26      48 ..    5498    5520 ..    5471    5524 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.2
                 HHHHHHHHT--GGGESEEEE-- CS
  Thiolase_C  28 ikkvlkkagltvedidlfEinE 49 
                 i++vl +a l  +d+d++E++ 
  KIR61153.1 322 IRQVLAEARLAPADVDVMEAHG 343
                 7899999999999999999985 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.017
                  HHHHHHHHHHHT--GGGESEEEE--SBH CS
  Thiolase_C   25 ayaikkvlkkagltvedidlfEinEAFa 52  
                    +i+++l  aglt  d+d++E++   +
  KIR61153.1 2017 QRVIRQALTTAGLTPTDVDAVEAHGTGT 2044
                  35899*****************997644 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.031
                  HHHHHHHHHHT--GGGESEEEE- CS
  Thiolase_C   26 yaikkvlkkagltvedidlfEin 48  
                   +i+++l+ aglt +d+d++E++
  KIR61153.1 3766 RVIRQALSTAGLTPDDVDAVEAH 3788
                  5799*****************98 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.43
                  HHHHHHHHHHT--GGGESEEEE- CS
  Thiolase_C   26 yaikkvlkkagltvedidlfEin 48  
                   +i+++l +agl+ +++d++E++
  KIR61153.1 5498 RVIRQALADAGLRPAEVDAVEAH 5520
                  5799*****************98 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.09        80       1      24 [.    3102    3125 ..    3102    3194 .. 0.77
   2 ?    2.2   0.0     0.085        76       1      77 [.    4849    4937 ..    4849    4958 .. 0.68
   3 ?    6.5   0.0    0.0039       3.5       1      78 [.    6580    6669 ..    6580    6684 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.09
   3Beta_HSD    1 vvtGgaGFlGralvkeLvrleelk 24  
                  ++tGg+G +G++l ++Lv ++ ++
  KIR61153.1 3102 LITGGTGTIGAHLARHLVTAHGVR 3125
                  69****************988655 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.085
   3Beta_HSD    1 vvtGgaGFlGralvkeLvrleelkevrvlD.....lrespelleelskvnvkk.viegDvtdkdkleealegvd......vvihlaslv 77  
                  +vtGg+G lG+ + ++Lv ++ ++++  l          ++l+ el   + +  ++ +D  d + l  al  vd      +v+h+a++ 
  KIR61153.1 4849 LVTGGTGALGALVARHLVARHGVRHLLLLSrrggdAPGAQRLRAELAAQGADVtIVACDAADRAALGVALATVDpdhpltAVVHTAGVL 4937
                  69******************999988777622222444444544444444433589999999999999998876333333566666654 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0039
   3Beta_HSD    1 vvtGgaGFlGralvkeLvrleelkevrvlD.....lrespelleelskvnvkk.viegDvtdkdkleealegv......dvvihlaslvd 78  
                  +vtGg+G lG+ + ++L r++ ++++  +       +  +el  el +++++  v+ +Dv d ++l  +l ++       +vih+a++ d
  KIR61153.1 6580 LVTGGTGALGALVARHLARRHGVRHLLLVSrsgaaAAGADELVGELDRLGTRAtVVACDVADRESLAGVLASIpaahplTAVIHTAGVLD 6669
                  69******************9988887777777767778899999999999888*************99988622222256778777765 PP

>> GBP_PSP  Paralytic/GBP/PSP peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2    0.0079         7      15      21 ..    3700    3706 ..    3698    3707 .. 0.92
   2 ?    2.3   0.2      0.14   1.3e+02      15      20 ..    5432    5437 ..    5430    5438 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0079
                  TTS-EEE CS
     GBP_PSP   15 aDGRCKP 21  
                  +DGRCKP
  KIR61153.1 3700 PDGRCKP 3706
                  9****** PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.14
                  TTS-EE CS
     GBP_PSP   15 aDGRCK 20  
                  +DGRCK
  KIR61153.1 5432 PDGRCK 5437
                  9****9 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.014        13       2      77 ..    3101    3177 ..    3100    3184 .. 0.81
   2 ?   -0.2   0.1       1.4   1.3e+03       2      70 ..    4848    4917 ..    4847    4924 .. 0.71
   3 ?    2.3   0.1      0.24   2.1e+02       2      65 ..    6579    6643 ..    6578    6659 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.014
                      EEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTT.TTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHH CS
  Semialdhyde_dh    2 vaivGatGyvGqellrlLeehpevelvvllsssr.saGkklaeavkaleegkdlkvedvdeeelkevdivflalpag 77  
                      v i G+tG +G+ l+r L +   v  + l+s++   a  + a + + ++ g+d++v ++d+++ +++  ++ a+pa+
      KIR61153.1 3101 VLITGGTGTIGAHLARHLVTAHGVRRLLLTSRRGiAADGAGALRDELVAAGADVTVAACDTADREALAGLLAAVPAE 3177
                      8899****************999*******99986333333333336779999999999999998888888888875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.4
                      EEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTT.TTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEE CS
  Semialdhyde_dh    2 vaivGatGyvGqellrlLeehpevelvvllsssr.saGkklaeavkaleegkdlkvedvdeeelkevdiv 70  
                      v + G+tG+ G+ ++r L     v  + lls++  +a  + + +++  ++g+d+++ ++d+++ +++ ++
      KIR61153.1 4848 VLVTGGTGALGALVARHLVARHGVRHLLLLSRRGgDAPGAQRLRAELAAQGADVTIVACDAADRAALGVA 4917
                      7899****************99999999999887433333333333567777777777777666665555 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.24
                      EEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSG.GGTTTECEBEEEGGGGGCT CS
  Semialdhyde_dh    2 vaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavk.aleegkdlkvedvdeeelk 65  
                      v + G+tG+ G+ ++r L++   v  + l+s+s  a    +e+v+   + g+  +v ++d ++ +
      KIR61153.1 6579 VLVTGGTGALGALVARHLARRHGVRHLLLVSRSGAAAAGADELVGeLDRLGTRATVVACDVADRE 6643
                      7899****************999999999999986666666666532233444444445555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (7005 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.85u 0.29s 00:00:02.14 Elapsed: 00:00:00.52
# Mc/sec: 40794.39
//
Query:       KIR61154.1  [L=373]
Description: daunorubicin biosynthesis sensory transduction protein DnrJ [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.6e-116  388.4   0.0   4.1e-116  388.2   0.0    1.0  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    0.00014   20.9   0.0    0.00019   20.5   0.0    1.2  1  Aminotran_5      Aminotransferase class-V


Domain annotation for each model (and alignments):
>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  388.2   0.0  4.6e-120  4.1e-116       3     361 .]      16     367 ..      14     367 .. 0.96

  Alignments for each domain:
  == domain 1  score: 388.2 bits;  conditional E-value: 4.6e-120
                      HHHHHHHHHHHHTSS-SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTT CS
  DegT_DnrJ_EryC1   3 keeeleaveevlksgwltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdt 96 
                      +++ l+ave v  sg+l+ g+ v+ FE++faaylg++h+++v +Gt+A+ l+L+alg+gpgdeVI++s+t + t+ a+ ++ga+pvfvDv +d+
       KIR61154.1  16 RADLLRAVETVFGSGQLILGNSVHGFESEFAAYLGAAHCVGVDNGTNAVTLGLEALGIGPGDEVITVSNTAAPTVLAIDNAGAVPVFVDVREDD 109
                      678899**************************************************************************************** PP

                      SSB-GGGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS.-SSS-EEEEESTHH CS
  DegT_DnrJ_EryC1  97 ynidpaaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnl.ttGeGGavvtndee 189
                      + +d + ++aait+rtka lpVhlyGq++dm+ l+++aa+hgl v+eD+A+A+Ga+++g+ +G++gdaa+fSFyptK+l ++G+GGavvt+d+ 
       KIR61154.1 110 FLMDTDLVAAAITPRTKALLPVHLYGQCVDMAPLQRLAAEHGLLVLEDCAQAHGARHHGRLAGTMGDAAAFSFYPTKVLgAYGDGGAVVTDDPH 203
                      ********************************************************************************************** PP

                      HHHHHHHHHBTTCECCTCSSCECCSS---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSS..SEEESCEEEE CS
  DegT_DnrJ_EryC1 190 laekarvlrnhGlkrkaekryvgevelGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttpketk..khawhlyavl 281
                      +++++r+lr +G+++     yv e+ +G+n rl+e+qA i++++L rld+ ++rR+++a +y+eeL +l     l +p  ++  +h+++ y+v+
       KIR61154.1 204 IDKRLRQLRYYGMDQ---VYYVVET-PGHNCRLDEVQAEILRTKLPRLDSYITRRQAVARRYQEELGDLADSHGLILPSVADgnEHVYYVYVVR 293
                      **************3...6677777.****************************************9999888888877777645999999999 PP

                      EHCCHHHCHHHHHHHHHHCCEE-B-SGSCHGGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHHHHHHHHHHHH CS
  DegT_DnrJ_EryC1 282 veeeaevkrdelvealkeegigtrvhypnplhrqpvyaerkeeasgdlpnaerlaervlsLplypelteedvdrVvealr 361
                       +      rde++e+lk+ gi  ++ yp p+h++  +a+   +a+g+lp++erla++++sLp+yp+l+++ +d+V++alr
       KIR61154.1 294 HP-----RRDEIIERLKQYGILLNISYPWPVHTMRGFAKLR-YAEGSLPVTERLAKEIFSLPMYPSLSQDLQDKVISALR 367
                      99.....79*******************************6.7789*******************************986 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.2e-08   0.00019      52     185 ..      45     167 ..      12     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.2e-08
                  HHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBE CS
  Aminotran_5  52 vaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvs 149
                  +a+ ++a+     + + ++t+a++l + +l+  + pgde++++++    +++++ ++     + v v   +++ ++d+d ++++++++tk++   h  
   KIR61154.1  45 FAAYLGAAH---CVGVDNGTNAVTLGLEALG--IGPGDEVITVSNTAAPTVLAIDNAG---AVPVFVDVREDDFLMDTDLVAAAITPRTKALLPVHL- 133
                  555555554...6778889988888777774..*******999988777775555554...5666666667788899****************9996. PP

                  TTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS-- CS
  Aminotran_5 150 nvtGtiqpveeigklakkkgalvlvDaaqavghipi 185
                     G + +++ + +la ++g lvl D aqa g ++ 
   KIR61154.1 134 --YGQCVDMAPLQRLAAEHGLLVLEDCAQAHGARHH 167
                  ..8***************************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2668.25
//
Query:       KIR61155.1  [L=332]
Description: dTDP-glucose 4,6-dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-79  267.3   0.0    2.5e-79  267.1   0.0    1.0  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    5.6e-64  215.9   0.0    6.7e-64  215.6   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    7.3e-21   74.4   0.0    9.4e-21   74.0   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
      1e-17   64.2   0.0    6.3e-17   61.6   0.0    1.9  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    2.7e-13   49.7   0.0    1.1e-12   47.6   0.0    2.0  1  RmlD_sub_bind    RmlD substrate binding domain
    1.6e-12   47.2   0.1    1.7e-11   43.8   0.1    2.4  1  NAD_binding_4    Male sterility protein
    2.6e-09   37.2   0.1    4.5e-08   33.2   0.1    2.4  2  NAD_binding_10   NAD(P)H-binding
     0.0031   17.0   1.7      0.079   12.4   1.7    2.5  1  adh_short        short chain dehydrogenase
  ------ inclusion threshold ------
      0.037   13.6   0.4      0.057   13.0   0.4    1.3  1  NmrA             NmrA-like family


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.1   0.0   1.3e-82   2.5e-79       2     332 .]       9     311 ..       8     311 .. 0.94

  Alignments for each domain:
  == domain 1  score: 267.1 bits;  conditional E-value: 1.3e-82
                    EETTTSHHHHHHHHHHHHCT-CCEE...EEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTS CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhg...ivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfek 94 
                    +TG+aGfiGs+ +++L+   y  +    +v +++++++g++++la       +e+++l+ gD++D++ l  ll  +  d v+++AA+shVd+s+  
     KIR61155.1   9 VTGGAGFIGSHYVRQLIGGAYPAFAdasVVVLDKLTYAGNLDNLAAVS---GDERFELVVGDICDAQLLAGLLPGA--DVVVHFAAESHVDRSIVG 99 
                    9*****************9987654333899*************9754...578********************99..9***************** PP

                    HHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS-T CS
  GDP_Man_Dehyd  95 PeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhesprrge 190
                    ++ ++ +nv Gt+++L+a+ ++g+    r++q+St+EvYG+ +     E++p++P+sPY+a+K+  d i+++y ++ygl+++ ++++n+++p++  
     KIR61155.1 100 AADFMHTNVQGTYTVLQACLDAGVG---RVVQVSTDEVYGSIATGSWPESHPLEPNSPYSASKACGDLIARSYFRTYGLPVCLTRCSNNYGPHQ-- 190
                    **********************985...9****************************************************************6.. PP

                    TSCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH............T CS
  GDP_Man_Dehyd 191 tfvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiewegkgeeevgrakes 286
                     ++++ i++++++ + g+ +v+ +G++ ++Rdw+hv+D+++a++l+++ ++p       ge+++v++  el++ +l  ++ +e             
     KIR61155.1 191 -YPEKIIPLFITNLLDGR-PVPLYGDGLNVRDWLHVDDHCRAIQLVVEGGRP-------GEVYNVGGGTELSNHDLTARLLAE------------L 265
                    .9**************98.8999***************************97.......9****************9987654............4 PP

                    TGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHHHH CS
  GDP_Man_Dehyd 287 gkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvrem 332
                    g +  +v+p+++rpg+++++  d +k+k+eLg++p++++e++++e+
     KIR61155.1 266 GADWSSVRPVPDRPGHDRRYSVDWRKIKNELGYEPRIGLETGLTET 311
                    66788999**********************************9986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.6   0.0   3.4e-67   6.7e-64       1     241 []       7     247 ..       7     247 .. 0.96

  Alignments for each domain:
  == domain 1  score: 215.6 bits;  conditional E-value: 3.4e-67
                 EEEETTTSHHHHHHHHHHHHCT......SEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg......yevigldrlssasntarledl......elveldltdrsalerlfkeeqpdavihlAavggvaassedpadf 87 
                 ++VtG++GfiGs+ v++l            v++ld+l++a+n  +l+ +      elv +d++d++ l+ l+   ++d+v+h+Aa+++v++s+  +adf
  KIR61155.1   7 VVVTGGAGFIGSHYVRQLIGGAypafadASVVVLDKLTYAGNLDNLAAVsgderfELVVGDICDAQLLAGLLP--GADVVVHFAAESHVDRSIVGAADF 103
                 68*****************98888887677*******************************************..9*********************** PP

                 HHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHH CS
   Epimerase  88 ieknlqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvi 186
                 +++n+qgt+++l+a+ +agv r++++s++evYG  a+    +  ++ pl+pnspY+a+K++g+ ++++y ++ygl+++ +r++n+yGp+   + ++++i
  KIR61155.1 104 MHTNVQGTYTVLQACLDAGVGRVVQVSTDEVYGSIAT---GSWPESHPLEPNSPYSASKACGDLIARSYFRTYGLPVCLTRCSNNYGPH---QYPEKII 196
                 *********************************9998...456667799****************************************...88***** PP

                 HHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 187 palirkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 p +i+++l+g+ +v l+gdg ++Rd+l+v+D+++ai lv+e    g++ge+yn+G
  KIR61155.1 197 PLFITNLLDGR-PVPLYGDGLNVRDWLHVDDHCRAIQLVVEG---GRPGEVYNVG 247
                 ***********.******************************...999******9 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   4.7e-24   9.4e-21       1     220 [.       8     226 ..       8     244 .. 0.84

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 4.7e-24
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrlee....lkevrvlDlrespelleelskvnvkk...viegDvtdkdkleealegvdvvihlaslvdvag.kltedeimkv 91 
                 vvtGgaGF+G++ v++L+           v vlD+ +    l++l  v  ++   ++ gD++d++ l   l g+dvv+h a+ + v    +    +m+ 
  KIR61155.1   8 VVTGGAGFIGSHYVRQLIGGAYpafaDASVVVLDKLTYAGNLDNLAAVSGDErfeLVVGDICDAQLLAGLLPGADVVVHFAAESHVDRsIVGAADFMHT 106
                 8*****************7543222247899***9999999999999888877889***************************999874556677**** PP

   3Beta_HSD  92 nvkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegd..kl 188
                 nv+GT +vl+ac++agv ++v +S+ ev g       i  g   + ++  ++++y+ sKa   +l+ ++     +    l  c  R +  yG+ +  ++
  KIR61155.1 107 NVQGTYTVLQACLDAGVGRVVQVSTDEVYGS------IATGSWPESHPLEPNSPYSASKACG-DLIARSYF---RTY-GLPVCLTRCSNNYGPHQypEK 194
                 *****************************99......899999999*************986.57766655...433.488888999999998653356 PP

   3Beta_HSD 189 lvpllkqlaklglalfkigdeevlsdrvYvgN 220
                 + pl+ + +  g  +  +gd  ++ d+  v+ 
  KIR61155.1 195 IIPLFITNLLDGRPVPLYGDGLNVRDWLHVDD 226
                 77777777777778888888888888888876 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0   3.2e-20   6.3e-17       1     247 [.       7     265 ..       7     274 .. 0.80

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 3.2e-20
                      EEEETTTSHHHHHHHHHHHHH.....B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------ CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkk.....kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKh 89 
                      v+vtG++G iGs+ vrq++         +++++l++  ++  ++++ l +   ++++  e   v+gd+ d++ l+ +l   + dvv+h AA  h
       KIR61155.1   7 VVVTGGAGFIGSHYVRQLIGGaypafADASVVVLDKLTYA-GNLDN-LAAVSGDERF--E--LVVGDICDAQLLAGLLP--GADVVVHFAAESH 92 
                      79****************9763232245667777665543.23333.2223333333..4..78***************..************* PP

                      HHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGG..............SS--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE- CS
  Polysacc_synt_2  90 VPlveenpleaiktNvlgtenvieaaieagvkkvvliStDKA..............vnPtnvmGatKrlaekllqalakeseekktkfvvvRfG 169
                      V      +++ ++tNv gt +v++a+++agv +vv +StD                 +P + + a+K++ ++++ ++ ++       ++++R  
       KIR61155.1  93 VDRSIVGAADFMHTNVQGTYTVLQACLDAGVGRVVQVSTDEVygsiatgswpeshpLEPNSPYSASKACGDLIARSYFRTY---GLPVCLTRCS 183
                      ****************************************86333223333333335788999999999999999998888...7999999999 PP

                      EETTGT...TSSHHHHHHHHHTTSSEEES-TT-.EEEEE-HHHHHHHHHHHHHH--SS-EEEE--.-EEEHHHHHHHH.... CS
  Polysacc_synt_2 170 NVlgSr...GSviplFkkqikeggpvtvTdpem.tRyfmtieeavqLvlqalalakggeifvldmGepvkivdlakaliels 247
                      N  g +     +iplF   + +g pv++    + +R ++ +++ ++ +   ++ ++ ge++ +  G  ++  dl  +l++  
       KIR61155.1 184 NNYGPHqypEKIIPLFITNLLDGRPVPLYGDGLnVRDWLHVDDHCRAIQLVVEGGRPGEVYNVGGGTELSNHDLTARLLAEL 265
                      99998723357****************976655389*******999999999999999999999999999999988886554 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   5.7e-16   1.1e-12       2     242 ..       6     276 ..       5     301 .. 0.83

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 5.7e-16
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.............................T--TTSHHHHHHHHHHH--SEEEE------HHHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre.............................eldltdaeavaellkeakpdvvvnaAAytavDkaE 68 
                    +++vtG+ G +Gs+ ++ql    + + a   +                               d+ da+ +a ll     dvvv+ AA   vD+  
     KIR61155.1   6 RVVVTGGAGFIGSHYVRQLIGGAYPAFAD--AsvvvldkltyagnldnlaavsgderfelvVGDICDAQLLAGLLPG--ADVVVHFAAESHVDRSI 97 
                    68899999999999888887544333333..2246666668889999999998888888888899999999999988..899************** PP

                    HSHHHHHHHHTHHHHHHHHHHHHCT-.EEEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHH....H-SSEEEEEE-SEESS..SSS CS
  RmlD_sub_bind  69 seeeaayavnaeavealAeaaaavga.lLihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavla....agkkalivRtswvyge..kgk 157
                       +  ++ n++++ ++ +a+  +g+  +++vStD V+   ++  + e+++ +P + Y ++K+ G    ++    +g  +++ R s  yg   + +
     KIR61155.1  98 VGAADFMHTNVQGTYTVLQACLDAGVgRVVQVSTDEVYGSIATGSWPESHPLEPNSPYSASKACGDLIARSyfrtYGLPVCLTRCSNNYGPhqYPE 193
                    *************************967**************************************998884444555678999999998744778 PP

                    -HHHHHHHHHHH-SEEEEESS-EE-..-EEHHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHCHTTSEEEEE- CS
  RmlD_sub_bind 158 nfvktmlrlakereelkvvaDqlgs..PTsardlAevllqllekaaeekelagvyHlanegetswlefArailkeagadseevkpis 242
                      +  ++  + +  ++ +  D l      +++d  +++  ++e         +vy +++  e+s +++    l+e+gad + v+p++
     KIR61155.1 194 KIIPLFITNLLDGRPVPLYGDGLNVrdWLHVDDHCRAIQLVVEGGRP----GEVYNVGGGTELSNHDLTARLLAELGADWSSVRPVP 276
                    88888888888888999998866540055578888888888887776....899999999999999999999999999999999986 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.1   8.4e-15   1.7e-11       1     205 [.       9     184 ..       9     195 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 8.4e-15
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--S CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsaA 96 
                    +TG+ GF+G++ +++L+           + a+ +  ++++l+ +   ++l  +      er + v+GD+++ +l      l  l    dv++h aA
     KIR61155.1   9 VTGGAGFIGSHYVRQLIGGAY------PAFADASVVVLDKLTYAGNLDNLAAVSG---DERFELVVGDICDAQL------LAGLLPGADVVVHFAA 89 
                    7****************8875......4556677789999988888888877775...************9885......889999********** PP

                    S-S.STTS...SEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHHH CS
  NAD_binding_4  97 tvnfdepy...kellrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvre 189
                      ++d+++    +++ +Nv+Gt  vl+ +        +++vST  v+g   +                 +  +++  + +  Y+ sKa+++ + r+
     KIR61155.1  90 ESHVDRSIvgaADFMHTNVQGTYTVLQACLDAGVG-RVVQVSTDEVYGSIATG----------------SWPESHPLEPNSPYSASKACGDLIARS 168
                    ******763337899***************99888.9******7777777743................345556666677*************** PP

                    HHHHH---EEEEEE-E CS
  NAD_binding_4 190 arrrsglpvvivRpsi 205
                    ++r  glpv+  R+s+
     KIR61155.1 169 YFRTYGLPVCLTRCSN 184
                    **************96 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   2.2e-11   4.5e-08       1     114 [.      11     145 ..      11     175 .. 0.67
   2 ?    0.9   0.0      0.18   3.6e+02     118     144 ..     249     275 ..     233     289 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 2.2e-11
                     TTTSHHHHHHHHHHHHC-.....T-EEEEE.....ETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHH........ CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.....ghevtal.....vRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeeg........ 77 
                     G+ G +G++ v++l+        + +v++l     + n + la+++ +e+ e+v+gd+ d++ la  l gad+Vv  ++ ++ d+ +        
      KIR61155.1  11 GGAGFIGSHYVRQLIGGAypafaDASVVVLdkltyAGNLDNLAAVSGDERFELVVGDICDAQLLAGLLPGADVVVHFAAESHVDRSIvgaadfmh 105
                     777888888888888765544322233222111113356777789999************************98766655555433345555555 PP

                     .....HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHH CS
  NAD_binding_10  78 .....aknivdaakeagvkRfvlvsaigvgdevpgefgewnk 114
                          + ++++a+  agv R+v vs+  v+ ++++  g+w +
      KIR61155.1 106 tnvqgTYTVLQACLDAGVGRVVQVSTDEVYGSIAT--GSWPE 145
                     56666*********************999986543..34433 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.18
                     HHHHHHHHHHHHHHHHSSSEEEEEEE- CS
  NAD_binding_10 118 kaylaakraaeellrasgldwTivrpg 144
                     ++ l  +   ++ll + g dw  vrp 
      KIR61155.1 249 GTELSNHDLTARLLAELGADWSSVRPV 275
                     556778899999*************95 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   1.7     4e-05     0.079       2     162 ..       6     168 ..       5     174 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4e-05
                 EEEEESTTSHHHHHHHHHHHH......TT-EEEEEESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SS CS
   adh_short   2 vvlvtGassGIGraiakelak......eGakvvvvdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgp 92 
                  v+vtG+++ IG  ++++l+       ++a+vvv+d+   +    +++l +    +++  + +D+ d++ +  l+  a       dv+v+ A+ +    
  KIR61155.1   6 RVVVTGGAGFIGSHYVRQLIGgaypafADASVVVLDKLTYAG--NLDNLAAVsgDERFELVVGDICDAQLLAGLLPGA-------DVVVHFAAES---- 91 
                 678888888888888888764222222556666655553333..4455554444455666777776666555555555.......7777777762.... PP

                 GGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH........HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHH CS
   adh_short  93 fselseeewervievNltgvflltravlpaml........kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrs 162
                   + s     + +++N++g++ + +a+l+a +        ++  G+I  ++S     p++  ++YsAsKa  + ++rs
  KIR61155.1  92 HVDRSIVGAADFMHTNVQGTYTVLQACLDAGVgrvvqvstDEVYGSI-ATGSWPESHPLEPNSPYSASKACGDLIARS 168
                 223334446778****************9933333333333444443.234555567888899999999987766665 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   2.9e-05     0.057       1      98 [.       7     127 ..       7     147 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.9e-05
                 EEESSTTSHHHHHHHHHHHHHT-EEEE....EES-S.....-SHHHHHHH.HSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG.............S CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvra....lvRdt.....kselakslk.eaGvelvkgdlddkeslvealkgvdvvfsvtgfy.............s 76 
                 ++v+G++G +G++ vr l+   ++ +a    +v d      + +++++++ ++  elv gd+ d ++l+ +l g+dvv    +               +
  KIR61155.1   7 VVVTGGAGFIGSHYVRQLIGGAYPAFAdasvVVLDKltyagNLDNLAAVSgDERFELVVGDICDAQLLAGLLPGADVVVHFAAEShvdrsivgaadfmH 105
                 68******************666665522213333366766444444444256689*********************9877775567888888888888 PP

                 -HHHHHHHHHHHHHHHS-SEEE CS
        NmrA  77 keiedgkklvdAakeaGvkhfi 98 
                 ++++   ++ +A   aGv +++
  KIR61155.1 106 TNVQGTYTVLQACLDAGVGRVV 127
                 8888888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2419.22
//
Query:       KIR61156.1  [L=295]
Description: glucose-1-phosphate thymidylyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-54  184.5   0.0      3e-54  184.2   0.0    1.1  1  NTP_transferase  Nucleotidyl transferase
    2.4e-10   41.0   0.1    4.5e-10   40.1   0.1    1.7  1  NTP_transf_3     MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.2   0.0   3.4e-58     3e-54       1     246 [.       2     238 ..       2     240 .. 0.97

  Alignments for each domain:
  == domain 1  score: 184.2 bits;  conditional E-value: 3.4e-58
                      EEEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHTH CS
  NTP_transferase   1 kavILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvalaa 94 
                      k+++LaGGsGtRL+PLt + +k+l+p ++k ++i+++ls+l+  g++e ++++t+ + +l+++ l++g+++g+++++a ++ + g+A+A++++a
       KIR61156.1   2 KGIVLAGGSGTRLHPLTVAFSKQLLPLYDK-PMIYYPLSTLMLGGVREFLIISTPADLPLFRKLLGTGAELGLRISYAEQQRPAGIAEAFRIGA 94 
                      79****************************.*************************************************************** PP

                      HHHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEECTTSBEEEEECS-SSHSHCSEECCSEEEEETTHHH CS
  NTP_transferase  95 elledeksdelvlvLggDhlikdayeeavkkaiekaakgtvtfgivpveeateyGvieadeegrverfvEKPkeakaselassGiYvfnsevll 188
                      ++++ +    + l+Lg++++ + ++  ++++ +++a     t++   v++++ yGv+e d egr   ++EKP++++ s+ +++G+Yv+ ++v++
       KIR61156.1  95 DFVGSDP---VSLILGDNIFHSPQLPGLLARGMADAD--GCTLFGHTVADPRPYGVVEKDAEGRLVGIEEKPAHPR-SSEIVTGLYVYSPDVVE 182
                      ****888...5**************************..9************************************.9999************* PP

                      HHHHCCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE-EEEXSSHHHHHHHHHHHH CS
  NTP_transferase 189 flakdleelkrgedeitdilpkaleegkvalaflfkdaeyWsDvGtldslleanekla 246
                       + +++++++rge eitd+++ +l++g++ l  l  d+  W D Gt d ll+a+++++
       KIR61156.1 183 LA-HQIRPSARGELEITDVNRHYLAQGRARLHSLGPDS-TWLDAGTYDGLLDAAAFVR 238
                      99.78********************************8.6*************99986 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.1   5.1e-14   4.5e-10       1     116 [.       3     129 ..       3     268 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 5.1e-14
                   EEEEEESS-TTTTT.....THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSH.C.....HHHHHHTTCTS-EEE-TTSS.-SHHHHHHHHHHHH.S CS
  NTP_transf_3   1 aviLAGGrSsRmgg.....dKallplggkpllervldalraagvdevvvvggd.e.....evlaalarlgvrvvededpg.kgplaslaaalraaad 85 
                   +++LAGG ++R+        K+llpl +kp++ + l +l   gv+e +++  + +     ++l   a+lg+r+ + e++  +g++++++ +++ + +
    KIR61156.1   3 GIVLAGGSGTRLHPltvafSKQLLPLYDKPMIYYPLSTLMLGGVREFLIISTPaDlplfrKLLGTGAELGLRISYAEQQRpAGIAEAFRIGADFV-G 98 
                   79**********8444567*********************99**88877765523433334444557888888777766449************9.9 PP

                   SSCEEEEETT-TT--HHHHHHHHHCHHHHTS CS
  NTP_transf_3  86 adavlvlacDmPlltpelverllaaaaasga 116
                   +d+v ++++D ++ +p+l   l++ +a++++
    KIR61156.1  99 SDPVSLILGDNIFHSPQLPGLLARGMADADG 129
                   *************999988888887764443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       187  (0.01043); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1969.78
//
Query:       KIR61157.1  [L=380]
Description: hypothetical protein TK50_25775 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-27   96.9  45.2    1.5e-27   96.6  45.2    1.1  1  Acyl_transf_3  Acyltransferase family


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6  45.2   8.2e-32   1.5e-27       2     339 ..      11     354 ..      10     355 .. 0.79

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 8.2e-32
                    xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxx RF
  Acyl_transf_3   2 aylDllRgiAillVvflHali.ayspdagrgspiqasqssqiaflggfgvplFFllSGfflaamlyrrrglsklikrRilrll....iplliwlll 92 
                    ++l ++R+iA+  V+++Ha+   + +++g  s+ + ++s   a++g  +v++FF+lSGf l+ + ++  + +++++rR+++++    + +l++l++
     KIR61157.1  11 DSLTGARFIAAASVFIFHAASiRIFQPTGPDSDFFLTIS---ATSGTMAVSFFFVLSGFILTWSARKYDTAREFYRRRFFKIFpnhiVTFLLSLVV 103
                    6899*****************655566666665555554...5******************99999*****************9999999999999 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
  Acyl_transf_3  93 iillialvaghiqanasanvtlfdetkglmfllfefpatghlWfLwalfvlylllplllrllrkvrkshlllllilllllslvfirhel....... 181
                    +++l           + +  +++           +  ++ ++W+L++++++y+++pll++l+++++ + l+++ +++l+ ++v+ +++        
     KIR61157.1 104 YATLAGALLPALLNITLLHAWVP-------KMPYFISFNHVTWSLSCELLFYAAFPLLYKLAQRIPVRRLWWAAGGVLAAIFVVPLFAKllptepr 192
                    99999999999999999999999.......579999999*********************************999988888888888886777777 PP

                    ........xxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 182 ........fgpatsvgllplpsvla..................llfflfGalladaddrdrnlsrglkislllsllllalillalfgqtdggglva 251
                            +                                  ll f++G+l+a+    +r  +++ + +l++ ++ ++l+ +++f+++       
     KIR61157.1 193 mmllltdnQ---------------SfsepilqywfvyifppvrLLDFVLGILMARIVLAGRWINLRPLPALAVVVACYVLASFVPFLYS------- 266
                    777766652...............1233333333344445777*****************87666666666666666666666666666....... PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 252 svliqsaslllvslgimllllllfalpsrsafk.llrylgkiSygiYliHlpllmllqkllrdwgln..lgevlllvlllvvsvivsvvll 339
                        + ++++ v+l i ++  +  a ++   ++  +++lg+iS+++Y++H++++ + ++ +   ++   ++ + +++l++ +++++ ++l+
     KIR61157.1 267 ---LNAVTIVGVALVIPAVASAETAGRPTFLASrPMIWLGEISFAFYMVHMMVILYGRQQVGYRHFLntTQGIGWILLMFAITLVGGWLLY 354
                    ...34444444444444444444444444444489*********************999999985557899*****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2904.78
//
Query:       KIR61158.1  [L=380]
Description: glutamine--scyllo-inositol aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-85  287.6   0.0    1.8e-85  287.5   0.0    1.0  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
      3e-07   29.7   0.0    3.9e-07   29.4   0.0    1.1  1  Aminotran_5      Aminotransferase class-V
     0.0079   15.4   0.0      0.016   14.4   0.0    1.4  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
       0.17   11.4   0.0       0.58    9.7   0.0    1.9  2  Sigma70_r4       Sigma-70, region 4


Domain annotation for each model (and alignments):
>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.5   0.0   3.9e-89   1.8e-85       2     360 ..       9     372 ..       8     373 .. 0.93

  Alignments for each domain:
  == domain 1  score: 287.5 bits;  conditional E-value: 3.9e-89
                      HHHHHHHHHHHHHTSS-SSSSHHHHHHHHHHHHHHT..-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B- CS
  DegT_DnrJ_EryC1   2 ikeeeleaveevlksgwltsgpeveeFEkafaaylg..vkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvd 93 
                      i++eel+a+++v +s+wl sgp++eeFE  fa++lg  +++++ ++s+t+Al la + lg+gpgd V++ps++Fva a+av+ +g +pvf+D+d
       KIR61158.1   9 IGAEELAAITAVFDSKWLGSGPRTEEFEGLFARHLGvpAENVLFLNSATSALFLAVELLGIGPGDDVVMPSNGFVANASAVVAAGGRPVFCDID 102
                      6899********************************87899***************************************************** PP

                      TTTSSB-GGGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS-SSS-EEEEEST CS
  DegT_DnrJ_EryC1  94 pdtynidpaaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnlttGeGGavvtnd 187
                      ++ +n+++a++ aa+t+rt+a+++ h+ G + d+d++ a++a+ g+ +ieDaA ++ ++++g++ G++gd+++ S+   K++ttG+GG++  +d
       KIR61158.1 103 EHHLNPSVADVLAALTPRTRAVMVLHYGGYPGDVDKIAALCAERGIALIEDAAVSIASSVRGQMCGTFGDLGIWSLDSRKVITTGDGGVLYARD 196
                      ********************************************************************************************** PP

                      HHHHHHHHHHHBTTCEC.CTCSSCECCS...........S---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTT CS
  DegT_DnrJ_EryC1 188 eelaekarvlrnhGlkr.kaekryvgev...........elGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttpke 269
                      +++a++ar+l+ hGl+  +++   +              ++G  +  ++i AAig +qL +l  +v+rRr+i ++y+++L +  g+  ++  +e
       KIR61158.1 197 PAVAQRARRLSYHGLDDrSSFTTAT--KsqhvwwsfqieDIGRRLVGNDITAAIGTVQLGKLAGFVERRRAIGQRYDKALGGFSGIRLPPPLPE 288
                      ****************732222222..2357899999***********************************************9877776666 PP

                      SSSEEESCEEEEEHCCHHHCHHHHHHHHHHCCEE-B-SGSCHGGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHHHHHHHHHHH CS
  DegT_DnrJ_EryC1 270 tkkhawhlyavlveeeaevkrdelvealkeegigtrvhypnplhrqpvyaerkeeasgdlpnaerlaervlsLplypelteedvdrVveal 360
                       +++  + y v+ +++a   rd + e l ++gi t+  y  plhr   y  + ++    lp+++++++  l Lp +++l +++vd +++++
       KIR61158.1 289 GHRSTHYFYCVRFDSQA--IRDGVSEDLLANGIYTSYRY-YPLHRVRRYGATDTV----LPVTDAVSDTSLLLPAHQSLLDDEVDMIAQQV 372
                      66577778889999884..4*******************.6******99999755....9***************************9986 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   8.8e-11   3.9e-07      46     182 ..      33     160 ..      29     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 8.8e-11
                  HHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTS.CBEGGGHHHH--TTEEE CS
  Aminotran_5  46 eearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeeg.eldldelekllnektkl 142
                  ee +  +a+ ++++  e+++f+ ++t+a+ l++  l+  + pgd +v+ +++  an  + +++    g + ++  +de+  +  + ++ ++l+++t++
   KIR61158.1  33 EEFEGLFARHLGVPA-ENVLFLNSATSALFLAVELLG--IGPGDDVVMPSNGFVANASAVVAA----GGRPVFCDIDEHHlNPSVADVLAALTPRTRA 123
                  67777889999***6.******************995..9*****************333333....45555888877651567************** PP

                  EEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTT CS
  Aminotran_5 143 vaithvsnvtGtiqpveeigklakkkgalvlvDaaqavgh 182
                  v++ h     G   +v++i++l+ ++g+ ++ Daa ++ +
   KIR61158.1 124 VMVLHYGGYPG---DVDKIAALCAERGIALIEDAAVSIAS 160
                  *****986666...777777788999********998864 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.5e-06     0.016      47     141 ..      33     119 ..      14     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.5e-06
                    HHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTT CS
  Aminotran_1_2  47 peleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealke 141
                     e+e   a+ lg      + +e +v++++ a++++ ++  ll + pgd++++p+  +     ++ ++gg  v + ++ e   +  + ++++al+ 
     KIR61158.1  33 EEFEGLFARHLG------VPAE-NVLFLNSATSALFLAVELLGIGPGDDVVMPSNGFVANASAVVAAGGRPVFCDID-EHHLNPSVADVLAALTP 119
                    688888899999......5566.*************************************************99966.55666667777777776 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         1   4.7e+03      27      37 ..      40      50 ..      40      50 .. 0.87
   2 ?    9.7   0.0   0.00013      0.58       1      19 [.     113     132 ..     113     142 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1
                HHHHTS-HHHH CS
  Sigma70_r4 27 gerlgiSrerV 37
                +++lg++ e V
  KIR61158.1 40 ARHLGVPAENV 50
                789****9987 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00013
                 HHHHS-HHHHHHHHHHH.TT CS
  Sigma70_r4   1 aLasLpererevlelrf.ge 19 
                 +La L++r r v++l + g 
  KIR61158.1 113 VLAALTPRTRAVMVLHYgGY 132
                 599**************744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 2419.95
//
Query:       KIR61159.1  [L=392]
Description: hypothetical protein TK50_25790 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-16   57.8   0.0    1.7e-15   56.9   0.0    1.5  1  DUF1205          Protein of unknown function (DUF1205)
    3.3e-10   39.4   0.0    5.4e-10   38.7   0.0    1.3  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
      1e-05   25.6   0.0    1.5e-05   25.1   0.0    1.2  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
     0.0081   16.2   2.9       0.02   14.9   1.8    2.2  2  Glyco_transf_4   Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> DUF1205  Protein of unknown function (DUF1205)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   3.7e-19   1.7e-15       1      95 []     181     276 ..     181     276 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 3.7e-19
                 EE-S-GGGS------EEE-------SS----GGGSS--SS-EEEEE-------.------STTTTHHHHHTSSSEEEE---TTTTSS-SS--SSEE CS
     DUF1205   1 idvaPpslrlddgketvsmryvpyNgasvveeWlkkksarkRvcvtlGtskae.dladadlleavldqvaelDaEivvaldeearselrelpdnvR 95 
                 id++P+ l      +  + ryvpyNg++  + Wl + + r+Rvc++ Gt++   ++++  +  ++++++a++D E+v+al + +r  l++  dnvR
  KIR61159.1 181 IDPCPDELLAIRMASRHATRYVPYNGSALTPSWLDEPAGRPRVCISWGTTSDFmGSEVLRTPLRIVEALADMDVEVVAALGKIDRGLLGAPRDNVR 276
                 89******99999999********************************977655999999999********************************9 PP

>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   1.2e-13   5.4e-10     297     418 ..     245     367 ..     222     376 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.2e-13
       UDPGT 297 iAsaLakipqkvlWrfdgkkPstLa...kntllvkWlPqndlLgHPktkAFvtHaGangvyEaisnGvPmvglPlFgdqrdNikrmeakgaavtlnvke 392
                 i +aLa++  +v+  +     + L+    n ++v+WlP   lL  P   A +  +G  +v+ a+ +GvP  ++P  + q+  ++ ++a ga+++l   e
  KIR61159.1 245 IVEALADMDVEVVAALGKIDRGLLGaprDNVRVVDWLPLSMLL--PTCDALINQGGPGTVLAAVASGVPQLVVPQISAQPLGAELLTASGAGLSLTPDE 341
                 6677777777777777776666676222588**********99..9***************************************************** PP

       UDPGT 393 mtsedllnAlkevindksykenimrL 418
                 +t+e +++ + e++++ s +  +  L
  KIR61159.1 342 VTAESIEKTVSELLDGSSVRAAAQAL 367
                 ***************99887766665 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   3.3e-09   1.5e-05      56     155 ..     274     369 ..     253     381 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 3.3e-09
                      EEEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS---.S CS
  Glyco_tran_28_C  56 kvevfefidkmaeaikaadLvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaeklr.l 148
                      +v+v++  + ++ ++   d  I  +G gt++ ++a g+p ++vp  +     q   a+ l+  ga+l l  +e+t e++e+++ el++ ++  +
       KIR61159.1 274 NVRVVDWLP-LSMLLPTCDALINQGGPGTVLAAVASGVPQLVVPQIS----AQPLGAELLTASGAGLSLTPDEVTAESIEKTVSELLDGSSVrA 362
                      566666666.6777777899999************************....8***********************************9998733 PP

                      ---SSCH CS
  Glyco_tran_28_C 149 aekskas 155
                      a+++ a 
       KIR61159.1 363 AAQALAE 369
                      3333333 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.8   4.4e-06      0.02      11     109 ..      20     149 ..      17     186 .. 0.70
   2 ?   -2.5   0.0         1   4.6e+03      10      26 ..     244     260 ..     240     286 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.4e-06
  Glyco_transf_4  11 LaraLarrGheVtvv........tpgddgpleeev.............................elvvrvprvplpllkrllrslaflrrlrrll 68 
                     La aL+++Gh+V+v         +                                        + +   p++     +  ++  af+ +l   +
      KIR61159.1  20 LAWALRAAGHDVRVAvqpplvrdV----------LgaglpaieagagpdfmielkkalagglegP-GGTTPSIEQIVVPHVRIAEAFAADLVPFA 103
                     7889***********554443331..........1334455566789999999999997666632.333333333455567778889999999** PP

  Glyco_transf_4  69 krekpDvvHahspaalgaallalrrrlgiplVltvHglye........k 109
                     +r+ pD+v + +paa++a ++a +   g+plVl+  g+++        +
      KIR61159.1 104 RRWSPDLV-VADPAAFVAPVVARA--VGAPLVLHTWGPMPdqlwadlvT 149
                     ********.999999999988888..5******9999998655444431 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1
  Glyco_transf_4  10 eLaraLarrGheVtvvt 26 
                     ++++aLa++ +eV+   
      KIR61159.1 244 RIVEALADMDVEVVAAL 260
                     67788888877776553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2883.27
//
Query:       KIR61160.1  [L=332]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-22   78.9   0.0    1.4e-21   77.5   0.0    1.7  2  GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fol
  ------ inclusion threshold ------
       0.17   11.6   0.0       0.27   11.0   0.0    1.2  1  IPPT          IPP transferase
       0.25   10.8   0.0       0.41   10.1   0.0    1.2  1  DUF2117       Uncharacterized protein conserved in archaea (D


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0   2.4e-25   1.4e-21       1     117 [.      10     126 ..      10     129 .. 0.95
   2 ?   -2.8   0.0       1.8   1.1e+04      67      78 ..     257     268 ..     223     270 .. 0.69

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 2.4e-25
                   EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-S CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPlat 97 
                   +r+++iG+  i+ +   p +e+++l  ++a+ +++  ra ++ e+fg   ++ +e+ll++++idav+v  p+ +h+e +++al+agkhvl EKPl+t
    KIR61160.1  10 IRMGVIGCADIAWRRTLPAMENEPLITLTAIASRHRDRAAHFTERFGGVPVEGYEALLEQDDIDAVYVPLPAVLHAEWIERALRAGKHVLAEKPLTT 106
                   689********888888999999************************************************************************** PP

                   SHHHHHHHHHHHHHHTS-EE CS
  GFO_IDH_MocA  98 tveeakelvelaekkgklvs 117
                   + ++a++l + a+++ +++ 
    KIR61160.1 107 DRKQAEHLFRVAAEHRRVLV 126
                   **************998765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.8
                   EE-S-GGGHHHH CS
  GFO_IDH_MocA  67 ivatpngtheel 78 
                    v tp+ th+ +
    KIR61160.1 257 RVFTPPATHQPV 268
                   588999999876 PP

>> IPPT  IPP transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.5e-05      0.27     121     178 ..      88     157 ..      61     176 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.5e-05
                 HHHHHHHHHHHHHHSS-HH..............ECEEEEEECSHHHHHHHHHHHHHHHHHTTHHHHHHHHHH CS
        IPPT 121 rqRiiRalevyeetgkpls..............ellviglesdreelyeridkRvdemleaGlleEveklla 178
                  +R +Ra + + + +kpl+              e+  + + ++   l++   +Rv +ml++G++ Ev+++ +
  KIR61160.1  88 IERALRAGKHVLA-EKPLTtdrkqaehlfrvaaEHRRVLV-ENFMFLHHHQHQRVADMLADGVIGEVRSFAS 157
                 5555555555433.34555555555555555543344444.67789999*******************9876 PP

>> DUF2117  Uncharacterized protein conserved in archaea (DUF2117)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   6.8e-05      0.41      13      62 ..     249     298 ..     245     315 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6.8e-05
     DUF2117  13 etGhvFgkiVverskekkpliqierpgekdgeiilwnekaeklakklsee 62 
                  tG+ + + V+    +++p+i ier+++ +  +++ +++++k+++++++ 
  KIR61160.1 249 STGRLWLNRVFTPPATHQPVIYIERQDHFEQFVLPADDQFAKIVRAFAQA 298
                 589999999999999*****************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2413.78
//
Query:       KIR61161.1  [L=197]
Description: dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-49  168.4   0.0    1.2e-49  168.2   0.0    1.0  1  dTDP_sugar_isom  dTDP-4-dehydrorhamnose 3,5-epimerase
      0.009   16.1   0.2      0.014   15.5   0.2    1.3  1  TcpA             Toxin-coregulated pilus subunit TcpA


Domain annotation for each model (and alignments):
>> dTDP_sugar_isom  dTDP-4-dehydrorhamnose 3,5-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.2   0.0   1.3e-53   1.2e-49       1     169 []       5     177 ..       5     177 .. 0.97

  Alignments for each domain:
  == domain 1  score: 168.2 bits;  conditional E-value: 1.3e-53
                      E-SSTTCEEEEE-EEEETTEEEEEEEEHHHHHHH.TS-----EEEEEEEETTBEEEEEEESSCS---EEEEEEESEEEEEEEE-BTTSTTTT-E CS
  dTDP_sugar_isom   1 eteiegvlliepkvfgDeRGfflesfneeefaea.gleaefvqdnlsvskkgvlRGlHfqkepkaqaklvrvvrGevldvaVDlRkgSptfgkw 93 
                      et+i+g++ i+ ++++D+RG f+e+++ +e+ ++ g + e+ q n+svs+k++lRG+H ++ p++q+klv++vrG+++dvaVDlR gSptfgk 
       KIR61161.1   5 ETSIPGAYRITVTQHSDRRGSFFEAWRFSELLQQvGQRFEIRQVNYSVSRKNTLRGIHGTTLPPGQSKLVTCVRGAAMDVAVDLRVGSPTFGKF 98 
                      699************************999885548999******************************************************* PP

                      EEEEEETTT--EEEE-TTEEEEEEE-SSEEEEEEEESS---GGGEEEE-TT-TTTT---...SS.B--HHHHT-B-HHH CS
  dTDP_sugar_isom  94 vgveLsaenkrqlyipegfahGflvlsdeaevlYkvteyyapesergirwnDpelgidw...eelilSekDkaapslae 169
                        +  +a++   +y+ eg++h+fl+l+d++ ++Y++ + y p +   ++  Dp+lgi w     +++S+kD+aap+lae
       KIR61161.1  99 DVTFQDATSGIGVYLTEGIGHAFLALTDDTCMSYLCGAEYVPGTMIDVAALDPALGIPWkldGPPVMSDKDAAAPTLAE 177
                      *************************************99**********************9779***********985 PP

>> TcpA  Toxin-coregulated pilus subunit TcpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   1.6e-06     0.014      75     126 ..      94     145 ..      74     148 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.6e-06
                 GG--TTTS--BGGG-SEEEE-SSTT-B---TT-HHHHHHTT....-SSS-EE CS
        TcpA  75 dlgdfetvvadaaksvGviksikgGaktldltnldhveklcggpgaGdayfd 126
                  +g f+++  da+ ++Gv  +   G + l lt+ + ++ lcg+     +  d
  KIR61161.1  94 TFGKFDVTFQDATSGIGVYLTEGIGHAFLALTDDTCMSYLCGAEYVPGTMID 145
                 589**************************************98665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1381.73
//
Query:       KIR61162.1  [L=267]
Description: hypothetical protein TK50_25805 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-33  114.2   7.8    9.3e-33  113.7   7.8    1.2  1  BTAD         Bacterial transcriptional activator domain
    1.5e-11   44.2   0.3    4.5e-11   42.7   0.0    1.9  2  Trans_reg_C  Transcriptional regulatory protein, C terminal
     0.0062   17.0   3.2      0.016   15.7   0.9    2.2  2  TPR_19       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   16.3   5.4       0.98   10.1   2.4    2.5  2  TPR_16       Tetratricopeptide repeat
      0.025   14.6   1.3        9.6    6.5   0.2    2.8  2  TPR_7        Tetratricopeptide repeat
      0.054   14.3   7.4        1.9    9.5   0.2    3.5  3  TPR_14       Tetratricopeptide repeat
      0.066   12.7   0.7        0.3   10.5   0.7    1.8  2  SPO22        Meiosis protein SPO22/ZIP4 like
       0.11   13.1   6.0        5.7    7.8   0.0    3.7  4  TPR_6        Tetratricopeptide repeat
       0.12   12.4   0.6       0.28   11.3   0.4    1.7  1  NUDIX        NUDIX domain
       0.18   12.1   6.8        6.4    7.2   0.6    2.9  3  TPR_12       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   7.8   5.2e-36   9.3e-33       1     146 []      99     244 ..      99     244 .. 0.99

  Alignments for each domain:
  == domain 1  score: 113.7 bits;  conditional E-value: 5.2e-36
                 BHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHH CS
        BTAD   1 vDlarfealvaagraalaagdpeeaaelleaAlalwrGpaladleagewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlh 99 
                 +Dl+ f alv+++r + +  +++ a+e l +Al+ wr+p+ a   +g+ ++ ++ + eelr+e++e la+ +l+  + ++a++ l +l+ae PlrE+l+
  KIR61162.1  99 LDLELFLALVEKARLQRSVHRHDLAVETLTEALRYWREPVQASSYEGPIIREFANWAEELRVECTELLARSLLASDQSSKAVRILYGLIAEFPLREKLY 197
                 7************************************************************************************************** PP

                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHH CS
        BTAD 100 rqlmrAlarsGrqaeALevYerlrrlLaeeLgvepgpelralheeil 146
                 + lm+Al +sGr+a+ALevY+++rr+ +eeLg+ep + lr+ +e il
  KIR61162.1 198 AFLMEALSQSGRRADALEVYQTARRQIREELGLEPCRFLRETQEIIL 244
                 *****************************************999886 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   2.5e-14   4.5e-11      12      77 .]      27      92 ..      17      92 .. 0.89
   2 ?   -2.5   0.0       3.1   5.6e+03      27      57 ..     110     138 ..     106     149 .. 0.58

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 2.5e-14
                 HHHHHHHHTTTSEEEHHHHHHHHTTTTS.TSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C 12 klLelLlenpgrvvsreeLleevwgede.dvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77
                  lL++Ll ++g+++s ++L  e+wg+++   +  +++v++s+LRk L+  ++++  + t+r  GY+l
   KIR61162.1 27 VLLRTLLIRNGHILSLDQLATELWGDKPpIRARASIHVYVSQLRKVLNRFSRNT-GVITTRAPGYIL 92
                 59**************************6677789**************77666.999*******86 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.1
                  HHHHHHHHTTTTSTSHTHHHHHHHHHHHHHH CS
  Trans_reg_C  27 reeLleevwgededvddrtvdvhisrLRkkL 57 
                  +++L ++v ++d   + +t++ + ++ R+ +
   KIR61162.1 110 KARLQRSVHRHDL--AVETLTEALRYWREPV 138
                  5555556655554..5556666666666555 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.37   6.6e+02      25      52 ..     101     131 ..      91     139 .. 0.80
   2 !   15.7   0.9   9.1e-06     0.016       1      54 [.     170     223 ..     166     227 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.37
      TPR_19  25 aearllL...AeallalgqldeAealLdalp 52 
                 +e+ l+L   A+++ +  + d A ++L +++
  KIR61162.1 101 LELFLALvekARLQRSVHRHDLAVETLTEAL 131
                 5666666677999999999999999998776 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 9.1e-06
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpee 54 
                 lla+ +   A+++l  +++e p  + + + L+eal ++g+ ++A ++ +++ ++
  KIR61162.1 170 LLASDQSSKAVRILYGLIAEFPLREKLYAFLMEALSQSGRRADALEVYQTARRQ 223
                 78999999****************************************999876 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0063        11       3      37 ..     110     141 ..     108     157 .. 0.82
   2 ?   10.1   2.4   0.00054      0.98       3      62 ..     166     222 ..     165     226 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0063
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAl 37 
                 +ar+ +   + d A++ l++al+++    + ++A+
  KIR61162.1 110 KARLQRSVHRHDLAVETLTEALRYW---REPVQAS 141
                 6888899999***************...5555554 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00054
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                 lar++l++ +  +A++ l  +++ +   P++   + +l +a+ + gr a+A+++y+ a r
  KIR61162.1 166 LARSLLASDQSSKAVRILYGLIAEF---PLREKLYAFLMEALSQSGRRADALEVYQTARR 222
                 7999999999999999999999999...99999999***************999999865 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0071        13       1      31 [.     106     134 ..     106     138 .. 0.85
   2 ?    6.5   0.2    0.0053       9.6       7      24 ..     202     219 ..     196     230 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0071
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 aL+  arl++++ +++ A+e +++  al++ 
  KIR61162.1 106 ALVEKARLQRSVHRHDLAVETLTE--ALRYW 134
                 677889******************..77765 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0053
       TPR_7   7 rlysrlGdyeeAielyeq 24 
                 ++ s+ G++++A+e+y+ 
  KIR61162.1 202 EALSQSGRRADALEVYQT 219
                 6889************98 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.2      0.33     6e+02       5      29 ..     108     132 ..     102     140 .. 0.78
   2 ?    9.5   0.2    0.0011       1.9       5      43 ..     164     202 ..     160     203 .. 0.89
   3 ?    8.1   0.7     0.003       5.4       3      29 ..     196     222 ..     194     228 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.33
      TPR_14   5 lalaeallalGdpdeAiallrrala 29 
                  + a++ +   ++d A++ l +al+
  KIR61162.1 108 VEKARLQRSVHRHDLAVETLTEALR 132
                 5567777888999*******99997 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0011
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                  +la+ lla+++  +A+++l  ++a +P  + ++ +l++
  KIR61162.1 164 ELLARSLLASDQSSKAVRILYGLIAEFPLREKLYAFLME 202
                 579*************************99999988875 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.003
      TPR_14   3 allalaeallalGdpdeAiallrrala 29 
                 +++ l eal ++G+ ++A+++++ a +
  KIR61162.1 196 LYAFLMEALSQSGRRADALEVYQTARR 222
                 677899*****************9965 PP

>> SPO22  Meiosis protein SPO22/ZIP4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.14   2.6e+02     151     188 ..      91     132 ..      68     148 .. 0.82
   2 ?   10.5   0.7   0.00017       0.3      56     152 ..     124     225 ..     112     231 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.14
       SPO22 151 idsvelseanfklilslikrla....eksaalavrvldylld 188
                 i ++++ e  ++l+l+l+ + +     ++++lav++l + l+
  KIR61162.1  91 ILELGGDELDLELFLALVEKARlqrsVHRHDLAVETLTEALR 132
                 5566677888999999999999999988*********99998 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00017
       SPO22  56 vkWLqraldilekqeseskss........sdlselrlsvlrllarayleldqeesyekalkavellqkeygkkehpsllllklkillkreadeeeieea 146
                 v  L++al +  +++++s+ +          ++elr  ++ llar +l+   ++   ka +++  l  e++  e+ + +l++    + r ad  e++++
  KIR61162.1 124 VETLTEALRYWREPVQASSYEgpiirefaNWAEELRVECTELLARSLLA---SDQSSKAVRILYGLIAEFPLREKLYAFLMEALSQSGRRADALEVYQT 219
                 555666666666666665555666666666789***************6...88888999999999999**9999999998887777999999888888 PP

       SPO22 147 leemid 152
                 +++ i+
  KIR61162.1 220 ARRQIR 225
                 887765 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       8.1   1.5e+04      23      30 ..      69      76 ..      66      78 .. 0.78
   2 ?    3.3   0.1     0.089   1.6e+02       2      28 ..     106     132 ..     105     135 .. 0.88
   3 ?    7.8   0.0    0.0032       5.7       6      31 ..     166     191 ..     165     192 .. 0.93
   4 ?    2.8   0.6      0.13   2.3e+02       2      28 ..     198     222 ..     197     223 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8.1
                HHHHHHH- CS
       TPR_6 23 lerlikeY 30
                l+++++++
  KIR61162.1 69 LRKVLNRF 76
                89999998 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.089
                 HHHHHHHHHHH.HHHHHHHHHHHHHHHH CS
       TPR_6   2 Alyklalsyrk.lgdtdkAlealerlik 28 
                 Al   a+++r+   ++d A+e+l + ++
  KIR61162.1 106 ALVEKARLQRSvH-RHDLAVETLTEALR 132
                 7888999***999.*********99876 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0032
                 HHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYP 31 
                 la+s+++ ++++kA+++l  li e+P
  KIR61162.1 166 LARSLLASDQSSKAVRILYGLIAEFP 191
                 89****988****************9 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlik 28 
                 A+++ als+   g+ ++Ale ++  ++
  KIR61162.1 198 AFLMEALSQS--GRRADALEVYQTARR 222
                 4555555555..59999******8765 PP

>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   0.00015      0.28      42      66 ..     215     240 ..     207     261 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHHHHSEEE.EEEEEEE CS
       NUDIX  42 tpeeAArREleEEtGlea.ellellg 66 
                 ++ ++ArR ++EE+Gle+ + l+ ++
  KIR61162.1 215 EVYQTARRQIREELGLEPcRFLRETQ 240
                 4569************7766665544 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.2    0.0036       6.4      48      75 ..     107     134 ..      96     136 .. 0.68
   2 ?   -1.0   0.0       1.3   2.3e+03      46      68 ..     161     183 ..     157     184 .. 0.74
   3 ?    7.2   0.6    0.0035       6.4      11      38 ..     202     229 ..     193     231 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0036
      TPR_12  48 lrnLgrlyralgryeeAlelleealaia 75 
                 l   +rl+r   r++ A+e l+eal+  
  KIR61162.1 107 LVEKARLQRSVHRHDLAVETLTEALRYW 134
                 4455677777777777777777777654 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.3
      TPR_12  46 ttlrnLgrlyralgryeeAlell 68 
                 ++   L+r ++a+++  +A+++l
  KIR61162.1 161 ECTELLARSLLASDQSSKAVRIL 183
                 55667888888888888888765 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0035
      TPR_12  11 avlrrlgrydeAlellekaleiarrllG 38 
                 ++l + gr ++Ale +++a++++r+ lG
  KIR61162.1 202 EALSQSGRRADALEVYQTARRQIREELG 229
                 5677889999999999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2107.09
//
Query:       KIR61163.1  [L=112]
Description: hypothetical protein TK50_25810 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 830.38
//
Query:       KIR61164.1  [L=90]
Description: hypothetical protein TK50_25815 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 677.68
//
Query:       KIR61165.1  [L=145]
Description: hypothetical protein TK50_25835 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1119.75
//
Query:       KIR61166.1  [L=1178]
Description: DNA polymerase III subunit alpha [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-98  328.5   0.0    4.7e-98  327.9   0.0    1.3  1  DNA_pol3_alpha   Bacterial DNA polymerase III alpha NTPase do
    9.3e-56  187.7   0.0    1.6e-55  187.0   0.0    1.4  1  DNA_pol3_finger  Bacterial DNA polymerase III alpha subunit f
    1.1e-45  155.9   0.0      2e-45  155.1   0.0    1.5  1  PHP              PHP domain
    7.1e-25   87.1   0.0    1.6e-24   86.0   0.0    1.6  1  HHH_6            Helix-hairpin-helix motif
    4.7e-06   26.5   0.0    2.2e-05   24.4   0.0    2.1  2  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
      0.075   13.1   0.2       0.41   10.7   0.0    2.3  2  B1               Protein L b1 domain


Domain annotation for each model (and alignments):
>> DNA_pol3_alpha  Bacterial DNA polymerase III alpha NTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.9   0.0  1.6e-101   4.7e-98       2     260 .]     315     583 ..     314     583 .. 0.95

  Alignments for each domain:
  == domain 1  score: 327.9 bits;  conditional E-value: 1.6e-101
                     HHHHHHHHHHHHHSTT---TTHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTT--B-S--GGGGG-HHHHHTTS----HHHHT--HHHHS-T CS
  DNA_pol3_alpha   2 yLrklveeglkerlkeelpeevkerlekElevIekmgfadyflivadlvkaakkkgilvGpgRGSaagslvayllgiTeidPlkydllFerFlnp 96 
                     ++rk++ +gl++r++ ++pe +  + e+El vI++mgf++yfl+vad++++ak++gi vGpgRGSaagslvay+lgiT++dP+ ++l+FerFlnp
      KIR61166.1 315 WFRKETFKGLARRFPGGIPEGHVVQAEYELGVIIQMGFPSYFLVVADFIQWAKSQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNP 409
                     7899******************************************************************************************* PP

                     TS-------EEEEGGGHHHHHHHHHHHH-TTTEEEEEEEEE--HHHHHHHHHHHH-GGHHHHHHHHHTS---.SS..--GGGG---.......-- CS
  DNA_pol3_alpha  97 ervsmPDiDidfekerreevidyvkekyGkenvaqiitfgtlaakaairdvgralglplkevdklaklipke.lg..itlekalee.......ek 181
                     ervsmPD+Didf+++rr evi+yv++k+G+++vaqi+tfgt++akaai+d +r+lg+p+++ d+++k++p   +g  i+l+ +++        + 
      KIR61166.1 410 ERVSMPDVDIDFDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVGDRITKAMPPAvMGkdIPLSGIFDPkhpryaeAG 504
                     **********************************************************************9964456776666666444444479 PP

                     SHHHHHHH-HHHHHHHHHHHTTTT-EEEEEEEEEEEEE-SS-GGGTS-EEE-TTT--EEESS-HHHHHTTT-EEEEEEE CS
  DNA_pol3_alpha 182 elkelieedeevkrlvelakkleglkrntgqHaaGvvispkeltdlvPlqkaekeeevvtqfdmedledlgllKlDfLG 260
                     e++ l+e+d++vk+++++ak++egl r+tg+HaaGv++s +++++++Pl+ +++++ ++tqfd+ ++e+lgllK+DfLG
      KIR61166.1 505 EIRGLYESDPDVKKVIDTAKGIEGLIRQTGVHAAGVIMSAEPIIEHIPLMRRDSDGVIITQFDYPTCESLGLLKMDFLG 583
                     ******************************************************************************9 PP

>> DNA_pol3_finger  Bacterial DNA polymerase III alpha subunit finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.0   0.0   5.3e-59   1.6e-55       1     165 [.     586     754 ..     586     755 .. 0.98

  Alignments for each domain:
  == domain 1  score: 187.0 bits;  conditional E-value: 5.3e-59
                      HHHHHHHHHHHHHHHH-----GGG--S--HHHHHHHHHT--TTSTT--SHHHHHHHHHH---SHHHHHHHHHHSSHHHHHTTHHHHHHHHHTTS CS
  DNA_pol3_finger   1 tltiirralklikekkgkeidleeipleDkkvykllskgdtlGvfqlesrgmrqllkrlkPktfeDlvalvaLyRpgpvqggnvddyikrknge 94 
                      +ltii++a+k+i+ ++gk++dl  ++l+Dk+ y+ll++gdtlGvfql+++ mr+ll+ +kP++feD+ a++aLyRpgp+  + +++y+ rkng 
       KIR61166.1 586 NLTIIDDAVKNIQLNHGKDLDLLGLDLDDKAAYELLARGDTLGVFQLDGGPMRSLLRLMKPDNFEDISAVLALYRPGPMGVDSHTNYALRKNGL 679
                      79******************************************************************************************** PP

                      S----SSH....HHTTTTTTTTT---BHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHT CS
  DNA_pol3_finger  95 ekveyihp....eleeiLketygvivyQEqvmqiaqvlagfslgeAdllrramgkkkeeeleklkekfiegaken 165
                      ++++ ihp     l+eiL++t+g+ivyQEqv + aq+lag++lg+Adllrramgkkk+e l+k+   f +g++e+
       KIR61166.1 680 QEITPIHPeleePLREILAPTHGLIVYQEQVQRAAQILAGYTLGQADLLRRAMGKKKKEILDKEFVPFRDGCRER 754
                      ********88888999********************************************************987 PP

>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.1   0.0   6.9e-49     2e-45       1     167 []       7     193 ..       7     193 .. 0.99

  Alignments for each domain:
  == domain 1  score: 155.1 bits;  conditional E-value: 6.9e-49
                 EEEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTTHHHHHHHHHHHHTTTTSEEEEEEE.................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxx RF
         PHP   1 dlHvHteyslldgalsieelvkkakelglkaiaiTDhgnlfgyvefykaakkkykagikpiiGleayvaddse....................kerpsh 79 
                 +lHvHteys+ldga+++++l+++a++lg++a+a+TDhgn++g+ +fyk+a    +agi+pi+G+eayva++s+                    +   +h
  KIR61166.1   7 HLHVHTEYSMLDGAARLKDLFAEANRLGMPAVAMTDHGNMHGANDFYKQA---MAAGITPILGVEAYVAPESRyhkarvkwgrpeqksddvsgNGAITH 102
                 9*************************************************...99******************************************** PP

                 ....E....EHHHHHHHHHHHHH...........HHHHHHS..................TTGGHHHHHHHHHHHHHHHC....T-EEEEEGC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxx RF
         PHP  80 ltllaknqeGyknllkllskaylegf.yrkpridkellekhsegLivlsgclkGevfealdlieveekaeealeelakif...gdyiEints 167
                 +t++a n++G++nl+ l s+a +eg   + pr+d+el+++h+eg+++++gc +G v++ l+l++++e a + + ++++if   ++++E++++
  KIR61166.1 103 MTMWAANRTGLHNLFTLNSRASMEGHyVKWPRMDMELIAEHAEGIMATTGCPSGAVQTRLRLGQFDE-AIKVASAYQDIFgkdNYFLELMDH 193
                 **************************6688*************************************.*********************987 PP

>> HHH_6  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.0   5.2e-28   1.6e-24       1      88 [.     828     915 ..     828     917 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 5.2e-28
       HHH_6   1 gvevlppdvnrSeadftveeedgairlGLaaikglgeaaaerivaeRekegpfksledlarrvds..lnkrqleaLakaGaldslglnRr 88 
                 g++vlppdvn S+  ft+   +++ir+GLaai+++g++++ +i++ R+++g+++++ d++ +vd+  +nk+++e+L+kaGa+d +g++R+
  KIR61166.1 828 GIQVLPPDVNTSAGPFTPV--GKDIRFGLAAIRNVGANVVTSIMRCRQEKGEYADFYDFLAKVDAvvCNKKTIESLIKAGAFDVMGHSRK 915
                 89****************9..777*****************************************************************8 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         2   5.9e+03      32      73 ..     103     144 ..      96     145 .. 0.85
   2 !   24.4   0.0   7.3e-09   2.2e-05       1      74 [.    1020    1095 ..    1020    1097 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2
                      EEEETHHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEE CS
  tRNA_anti-codon  32 vvlfreeatklaenlkeGdvvrvtGrvkrrpggelelkveei 73 
                       +++ ++ t l++ ++ ++    +G   ++p+ ++el++e  
       KIR61166.1 103 MTMWAANRTGLHNLFTLNSRASMEGHYVKWPRMDMELIAEHA 144
                      578888999999999999999999999999988999999875 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 7.3e-09
                       EEEEEEEEEEE...EEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEEE CS
  tRNA_anti-codon    1 VtvaGrvtsis...drsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrrpggelelkveeie 74  
                       Vt+aG ++ ++   +++g+  ++++l+D  g +++ +f++ ++ + + + e+ +v v+Grv rr++  + + + +++
       KIR61166.1 1020 VTLAGILSGVQrrvTKQGRAWASATLEDLAGGVEALFFPNTYEVIGQYIAEDAIVVVKGRVDRRDDT-PRIMAMDMQ 1095
                       8999999999999**************************999999999****************999.888776665 PP

>> B1  Protein L b1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014      0.41      19      63 ..     156     198 ..     149     202 .. 0.91
   2 ?   -2.9   0.1       2.5   7.3e+03      38      51 ..     926     940 ..     915     942 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
          B1  19 GktqtaefkGtfaeataeayryadllkkenGeytadledgGytin 63 
                 G +qt    G f+ea+  a +y d++ k+n  y  +l d G+ i 
  KIR61166.1 156 GAVQTRLRLGQFDEAIKVASAYQDIFGKDN--YFLELMDHGLDIE 198
                 899999999*******************97..999*****99886 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.5
          B1  38 yryadllkken.Gey 51 
                  +yad+ +ke  G+y
  KIR61166.1 926 DAYADVKRKEAvGQY 940
                 489**9998743666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 8321.33
//
Query:       KIR61167.1  [L=71]
Description: hypothetical protein TK50_25845 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 569.27
//
Query:       KIR61168.1  [L=345]
Description: class V aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-28   98.5   0.0    4.8e-26   91.6   0.0    2.0  2  Aminotran_5      Aminotransferase class-V
    2.4e-07   29.7   0.0    3.3e-07   29.2   0.0    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
        1.7    7.9   5.6        3.8    6.7   5.6    1.5  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.0   8.1e-30   4.8e-26      47     293 ..      56     290 ..      41     303 .. 0.88
   2 !    4.9   0.0    0.0017        10     353     369 ..     321     337 ..     298     338 .. 0.83

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 8.1e-30
                  HHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEE CS
  Aminotran_5  47 earekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklva 144
                    r+ +a l++++    + +t G+t +   ++ ++  +l +g ++vv e+e  +nl pw + a ++g++v+ +pl  +g++d      +++ +t+lva
   KIR61168.1  56 RSRAAFAGLVGVAP---TDVTVGSTVSALFAPVAA--ALPAGATVVVPEVEFTSNLFPWLAQA-ERGVRVRTVPL--DGLVD------AIDADTDLVA 139
                  56677777777776...334667775443333333..59********************9998.66********9..56666......9********* PP

                  EESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTT.TTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEE. CS
  Aminotran_5 145 ithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghK.llgPtGiGvlyvrkellekleplllggemveevsleett. 240
                  ++ v+++ G + + ++i+++a+++galv+vDa+qa g  p+d    +v  +a+++ K l+gP G  + y  ++l e+l+p   g +  e++   +++ 
   KIR61168.1 140 FSLVQSADGAVADYHRIVAAARAHGALVAVDATQACGWLPFDAGLADV--VAVGAYKwLMGPRGSALAYLAPALRERLRPDGAGWYAAEDPFSSYYGp 235
                  *****************************************9887766..****************************99999999999999899988 PP

                  ...EHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCT CS
  Aminotran_5 241 ...faeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlks 293
                     +a   ++f   +p  +++ig + ale+l+eig+ a+++h+ +la++ l++l  
   KIR61168.1 236 plrLAADARRFDQ-SPAWFSWIGTAPALELLAEIGVPAVREHDVRLANRFLAGLGR 290
                  9999999999**8.**********************************99998865 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0017
                  -EEEEE--TTS-HHHHH CS
  Aminotran_5 353 gtvRaSlyiynteeevd 369
                  g vRaS+++y+t ++vd
   KIR61168.1 321 GRVRASFHLYTTDADVD 337
                  789*************9 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   5.5e-11   3.3e-07      71     202 ..      72     198 ..      59     206 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 5.5e-11
                      EEESSHHHHHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHH.TTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHH CS
  Cys_Met_Meta_PP  71 lavssGmaAiaaailallkaGdeivvsddlYggtqrllkkvlkk.lgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiakla 163
                      + v s ++A++a + a l aG  +vv +  +  t++l+  +++   g++v+ v     + l  ai+  t+lv +  + +    v+D ++i+++a
       KIR61168.1  72 VTVGSTVSALFAPVAAALPAGATVVVPEVEF--TSNLFPWLAQAeRGVRVRTVPL---DGLVDAIDADTDLVAFSLVQSADGAVADYHRIVAAA 160
                      56778899******************99855..8999999888758999999987...78999******************************* PP

                      HHTT-EEEEEGTTTHTTTS-GGGGT.-SEEEEETTTTTTC CS
  Cys_Met_Meta_PP 164 kkagvlvvvDntfaspllqrplklg.aDivvhSaTKylgG 202
                      +++g+lv vD+t a + l  p++ g aD+v   a K+l G
       KIR61168.1 161 RAHGALVAVDATQACGWL--PFDAGlADVVAVGAYKWLMG 198
                      ****************98..9****9************99 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.6   0.00064       3.8      22     150 ..      51     176 ..      31     182 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00064
                      SHHHHHHHHHHHHHHT.-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEE CS
  DegT_DnrJ_EryC1  22 gpeveeFEkafaaylg.vkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitertka 114
                      ++ +++  +afa  +g +   ++v s  +Al     a  + +g +V+vp + F++   + l    + v v   p +  +d+ ++   +    + 
       KIR61168.1  51 DDATRRSRAAFAGLVGvAPTDVTVGSTVSALFAPVAA-ALPAGATVVVPEVEFTSNLFPWLAQAERGVRVRTVPLDGLVDAIDADTDLV---AF 140
                      5566666789999999666789999999999877655.5666899********999999999999999998888888887554443332...44 PP

                      EEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT CS
  DegT_DnrJ_EryC1 115 IlpVhlyGqvadmdalkaiaakhglkvieDaAhAlG 150
                       l+  + G+vad  ++ a a++hg  v  Da +A G
       KIR61168.1 141 SLVQSADGAVADYHRIVAAARAHGALVAVDATQACG 176
                      4666788***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2590.44
//
Query:       KIR61169.1  [L=199]
Description: hypothetical protein TK50_25860 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1517.96
//
Query:       KIR61170.1  [L=522]
Description: multidrug MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-58  196.6  50.5    9.6e-57  192.5  41.5    2.2  2  MFS_1       Major Facilitator Superfamily
    7.1e-08   31.7  18.5    0.00023   20.2   4.6    2.3  2  MFS_1_like  MFS_1 like family
    8.3e-06   24.5  18.5    1.9e-05   23.3   4.8    2.4  2  MFS_3       Transmembrane secretion effector
    9.3e-06   24.8   6.9    9.3e-06   24.8   6.9    3.4  2  Sugar_tr    Sugar (and other) transporter
    1.5e-05   23.8  13.7    1.5e-05   23.8  13.7    3.1  3  MFS_2       MFS/sugar transport protein
    2.5e-05   23.8   9.9    2.5e-05   23.8   9.9    3.4  3  MFS_4       Uncharacterised MFS-type transporter YbfB
     0.0064   14.8   4.8      0.031   12.6   0.2    3.0  3  OATP        Organic Anion Transporter Polypeptide (OATP) fami
  ------ inclusion threshold ------
        4.6    7.3   7.4        3.8    7.6   0.1    3.0  4  DUF2275     Predicted integral membrane protein (DUF2275)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.5  41.5   4.3e-60   9.6e-57       2     352 ..      20     413 ..      19     414 .. 0.91
   2 !    9.5   1.6   0.00019      0.42     123     187 ..     449     514 ..     440     520 .. 0.82

  Alignments for each domain:
  == domain 1  score: 192.5 bits;  conditional E-value: 4.3e-60
       MFS_1   2 llaaflsalarsilgpalplalaed...lgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqG 96 
                 +++++++ l+ +il++al  +la+    lg+s  e+ +++  y+l++a + + +G+l+dr Gr+r+ll+gl+lf+l++ll ++ ++++  l+ +r+l+G
  KIR61170.1  20 VISLLVVVLDNTILNVALR-TLADPvhgLGASQGELEWAINSYTLVFAGLLFTFGVLGDRAGRKRFLLVGLVLFGLSSLLSAY-AQSPaQLIGARALMG 116
                 68889999999******98.7755533388***********************************************777778.889999********* PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee....... 188
                 +g++a++p+ +++i+ +f ++ergraig+++++++l++++gp+lgg+l+++++W +vf+i+ +v ++++vl++ll+pe++ + +   +++         
  KIR61170.1 117 VGGAAIMPVTLSIISNVFDPRERGRAIGVWAGAVGLAVAIGPILGGALLEHYWWGSVFLINVPVVAVGVVLVALLVPESRDPDPGRVDVPGVllsvvgl 215
                 ****************************************************************************999999999999999999***** PP

       MFS_1 189 .....................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglll 250
                                                      + +  +p ++  ++++ +++  + ++ + l+ff+ +g+++++ +ylq v+g++  l++gll+
  KIR61170.1 216 valtygiidggehgfdrplvwvsilgglavltwfvllELRSDHPSLD-VRLFRVPRFA-APVALVGLVFFAAMGVMFFSSFYLQLVRGYT-PLQTGLLF 311
                 ***************99999999998888888887776666666666.6777777744.477777777778888****************.8******* PP

       MFS_1 251 allalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll.vlvliGfglgfvfpsllalasdlappeeagtasglfntagslg 348
                   +a++ +++a+ ++++++r+g r    ++l+l+++a++++a++ +  ++++++l v++l G+g++ ++p+++  +++ +p+e+ag  s++ nt+++++
  KIR61170.1 312 LPFAAAQLVFAPRSAAMVRRYGGRAVAAVGLALTAVALAAFAFIDAG-TPIWVVLvVFLLQGIGMANIMPPATESIMSALPREKAGVGSAVSNTVRQVA 409
                 ***********************************************.555555527777999************************************ PP

       MFS_1 349 galg 352
                 galg
  KIR61170.1 410 GALG 413
                 **98 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00019
       MFS_1 123 igllsagfslGailgpllggllasslg..Wravfyilaivsllafvlfllllpeepperkrkspkee 187
                  g ++a+ +lG+  gp+l  +  +++    +++  + a+v++l+fv++l ++p ++p+r+  +p++ 
  KIR61170.1 449 SGAYAAAGQLGP-TGPALVTAANDAFVsaMHWAAALSAAVAALGFVVVLRWMPGRAPDRAAGTPATS 514
                 577888888888.7888888888555568999***************99***999999998877765 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   6.0   7.3e-07    0.0016     256     383 ..      48     174 ..      18     176 .. 0.88
   2 !   20.2   4.6     1e-07   0.00023     240     364 ..     283     411 ..     227     430 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.3e-07
  MFS_1_like 256 gasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgll 354
                 gas+  l  ++   ++    l+f+   l ++ G  + l+++l+++ l  ll a+ +++  ++ + +L g+  +++  +  + +s+++ ++ +++ +g+ 
  KIR61170.1  48 GASQGELEWAINSYTLVFAGLLFTFGVLGDRAGRKRFLLVGLVLFGLSSLLSAYAQSPAQLIGARALMGVGGAAIMPVTLSIISNVFDPRERGRAIGVW 146
                 55555555555555566666788888999********************************************************************** PP

  MFS_1_like 355 sglyfglGralGsliGGllwdlksaiflF 383
                 +g+ +gl  a+G ++GG+l +++    +F
  KIR61170.1 147 AGA-VGLAVAIGPILGGALLEHYWWGSVF 174
                 **9.9**************9988655555 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1e-07
  MFS_1_like 240 swgiienF.lflYL.kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaii...enawlvlpievLhgisfgllwaa 333
                 + ++   F  + YL    g++    G l    ++a++++   +  +++++G + +  ++l ++++ +   a+i   +  w+vl++ +L+gi ++ +   
  KIR61170.1 283 FAAMGVMFfSSFYLqLVRGYTPLQTGLLFLPFAAAQLVFAPRSAAMVRRYGGRAVAAVGLALTAVALAAFAFIdagTPIWVVLVVFLLQGIGMANIMPP 381
                 222223340445555557***********999*****************************************999999******************** PP

  MFS_1_like 334 aveyvskiapksleatgqgllsglyfglGra 364
                 a+e +  + p++ ++ g ++ +++   +G a
  KIR61170.1 382 ATESIMSALPREKAGVGSAVSNTVRQVAG-A 411
                 *******************9888765444.3 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   4.8   8.3e-09   1.9e-05      63     187 ..      70     191 ..      53     200 .. 0.84
   2 !    6.3   5.8    0.0012       2.6      84     166 ..     341     424 ..     325     428 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 8.3e-09
       MFS_3  63 ilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGv 161
                    G+l D   r+++ll++ +l  l+s+l +       +sp  l++   l+g+G a  +P    +++++ + r+   A+ + +  + +a ++GP lgG 
  KIR61170.1  70 FTFGVLGDRAGRKRFLLVGLVLFGLSSLLSAY-----AQSPAQLIGARALMGVGGAAIMPVTLSIISNVFDPRERGRAIGVWAGAVGLAVAIGPILGGA 163
                 457****************9999988865443.....479*********************************************************** PP

       MFS_3 162 lva..avGaalafavnalsylalivall 187
                 l+   + G+++   v +++  +++vall
  KIR61170.1 164 LLEhyWWGSVFLINVPVVAVGVVLVALL 191
                 **82245666666666677767777765 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0012
       MFS_3  84 llalvsvlltvlaalgllsp.wlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaav 166
                  lal++v l+ +a+++  +p w++l++ ll giG+a  +P    s+   ++r++     a++     +a + G A+ G +++av
  KIR61170.1 341 GLALTAVALAAFAFIDAGTPiWVVLVVFLLQGIGMANIMPPATESIMSALPREKAGVGSAVSNTVRQVAGALGVAVLGSVLSAV 424
                 478889999999999997764899999999******998888889999999998666555555556777777777777777765 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   6.9   4.1e-09   9.3e-06      64     194 ..      70     195 ..      49     196 .. 0.82
   2 ?   -0.5   4.3      0.18   4.1e+02      46     117 ..     305     376 ..     275     429 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 4.1e-09
                 HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  64 lfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgln 162
                 +++g lgdr GRk  ll++ vlf  +++l+a a+   s  +li +R l+G+g  ++  ++   is +  ++ Rg+ ++++    ++G  va++  lg +
  KIR61170.1  70 FTFGVLGDRAGRKRFLLVGLVLFGLSSLLSAYAQ---SPAQLIGARALMGVGGAAIMPVTLSIISNVFDPRERGRAIGVWAG--AVGLAVAIGPILGGA 163
                 679*******************************...***************99999999999************9999755..566666666666666 PP

                 TSS-TTHHHHHHHCCH.HHHHHHHHHGGGS--- CS
    Sugar_tr 163 ktsnadgwrillglql.vpallllilllflPES 194
                   +    w   + +++ v a+ ++++ l++PES
  KIR61170.1 164 LLEH-YWWGSVFLINVpVVAVGVVLVALLVPES 195
                 6665.3355544444426677788888999999 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.18
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvG 117
                 +++gl++  f + +++ +  +  ++ r+G + + +++ +l+ ++ +  a++++++ ++v++v  +l Gig+ 
  KIR61170.1 305 LQTGLLFLPFAAAQLVFAPRSAAMVRRYGGRAVAAVGLALTAVALAAFAFIDAGTPIWVVLVVFLLQGIGMA 376
                 466666666666666666667778889999999999999999999999999988899999999999998875 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   2.5    0.0001      0.22     270     382 ..      63     166 ..      16     171 .. 0.82
   2 !   23.8  13.7   6.5e-09   1.5e-05     229     384 ..     275     424 ..     264     432 .. 0.83
   3 ?   -0.4   0.2      0.14   3.2e+02     372     420 ..     444     496 ..     425     500 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0001
       MFS_2 270 isallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfiskl 368
                 +  +  ++ + +l  r g+k+  l+g++l  + ++l   +  ++ + ++ + ++ g+g ++++ +  s+++ v+D  e       +g + +v++ +  l
  KIR61170.1  63 LVFAGLLFTFGVLGDRAGRKRFLLVGLVLFGLSSLLSAYA--QSPAQLIGARALMGVGGAAIMPVTLSIISNVFDPRE-------RGRAIGVWAGAVGL 152
                 3333445668999**************9999999999888..99999****************************987.......78888888888888 PP

       MFS_2 369 atgiglgvsgllLs 382
                 a++ig ++ g+lL+
  KIR61170.1 153 AVAIGPILGGALLE 166
                 88888887777775 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 6.5e-09
       MFS_2 229 llllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlll.qpsnlllflvllviag 325
                 ++l++l++++a+gv++  + +yl+ v g +  +  +++l + +++l+++p  +++++r+g ++++++g++lt+v l+ + ++   + ++++lv++++ g
  KIR61170.1 275 VALVGLVFFAAMGVMF-FSSFYLQLVRGyTPLQTGLLFLPFAAAQLVFAPRSAAMVRRYGGRAVAAVGLALTAVALAAFAFIdAGTPIWVVLVVFLLQG 372
                 6778888888899988.57899******8888888888888999******************9999999998888777777747778888888888888 PP

       MFS_2 326 fgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllLsaf 384
                 +g  +a+++p++     ++      ++ ++gv  av  ++ ++a+++g++v+g +Lsa+
  KIR61170.1 373 IG--MANIMPPA-----TESIMSALPREKAGVGSAVSNTVRQVAGALGVAVLGSVLSAV 424
                 88..55555544.....45555556799***************************9975 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.14
       MFS_2 372 iglgvsgllLsafgy....rakasvqspqvvlalrllyavlpavlllvallll 420
                  + ++sg++ +a ++     a   + ++++v+a+++++a+  av +l  +++l
  KIR61170.1 444 ASESISGAYAAAGQLgptgPALVTAANDAFVSAMHWAAALSAAVAALGFVVVL 496
                 55556666666655554443444556678999999999999888888877776 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   9.9   1.1e-08   2.5e-05      43     173 ..      66     196 ..      45     226 .. 0.79
   2 ?   -4.4  15.9       4.1   9.2e+03     154     345 ..     237     425 ..     201     436 .. 0.71
   3 !    6.4   0.8    0.0021       4.6     139     183 ..     468     514 ..     438     521 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.1e-08
       MFS_4  43 vGallaafalsa.gaeRlr.llagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarrervgallfaGvGlGiavsgllvll 139
                 +G l ++f+    +a R r ll+gl++  l+ l +a ++s a ++ +R l Gv++A+++ ++ s++ +   + +r+r +++  + vGl +a++ +l  +
  KIR61170.1  66 AGLL-FTFGVLGdRAGRKRfLLVGLVLFGLSSLLSAYAQSPAQLIGARALMGVGGAAIMPVTLSIISNVFDPRERGRAIGVWAGAVGLAVAIGPILGGA 163
                 5544.445544304445556*************************************************************9999***********999 PP

       MFS_4 140 llqlglsasslWlalavlsavllllvalllpraa 173
                 ll++ + +s + l+   + av ++lvall+p+++
  KIR61170.1 164 LLEHYWWGS-VFLINVPVVAVGVVLVALLVPESR 196
                 999999888.5666666778999999**999332 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 4.1
       MFS_4 154 lavlsavllllvalllpraalreasaaaeaakaeqkslpllalllaYglaGfGYiitatFlvaiardgaggalleallWllvGlaaivgvlvwlrvakr 252
                 +++l  +++l  ++ll   ++ + s + +  + ++  +p+  + l+ ++a++G +    F  +++r     +l++ ll l +  a +v +  +  + +r
  KIR61170.1 237 VSILGGLAVLTWFVLLE-LRSDHPSLDVRLFRVPRFAAPVALVGLV-FFAAMGVMFFSSFYLQLVRG--YTPLQTGLLFLPFAAAQLVFAPRSAAMVRR 331
                 34555555555555555.6667777777776666666666555555.67899999999999999987..889999999988888888888888889999 PP

       MFS_4 253 sglrralaaallieavgvllsll..spsplglivss.vllGltflaitalvlqlarelappatrrllglmTasfgigQilGpllasllaeatgsla 345
                  g r++ a+ l++ av++++       +p+++++ + +l G  +  i++ +++ +    p ++  + +++  s  + Q++G+l +++l +++++++
  KIR61170.1 332 YGGRAVAAVGLALTAVALAAFAFidAGTPIWVVLVVfLLQGIGMANIMPPATESIMSALPREKAGVGSAV--SNTVRQVAGALGVAVLGSVLSAVY 425
                 9999999999999999887665411455666655541566777777888888888888887776666654..567999999999999999888776 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0021
       MFS_4 139 lllqlglsasslWl..alavlsavllllvalllp.raalreasaaaea 183
                 +++ +++sa   W   + a+++a+ +++v+ ++p ra+ r+a ++a +
  KIR61170.1 468 AANDAFVSAM-HWAaaLSAAVAALGFVVVLRWMPgRAPDRAAGTPATS 514
                 3333333333.35511569999************99999999998876 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.12   2.7e+02      58      85 ..      74     101 ..      57     104 .. 0.85
   2 !   12.6   0.2   1.4e-05     0.031     135     195 ..     108     168 ..     100     180 .. 0.94
   3 ?    2.6   0.2     0.015        33     132     197 ..     361     427 ..     343     508 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.12
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  58 YfggrghrPrwigigallmalgslllal 85 
                  +g+r+ r r++ +g++l++l+sll a 
  KIR61170.1  74 VLGDRAGRKRFLLVGLVLFGLSSLLSAY 101
                 5899999*****************9885 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.4e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 135 fflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllkly 195
                 ++ a  l+G+G+++i+++ +s i +  ++++    +g++  +  l +a+G +lG++ll+ y
  KIR61170.1 108 LIGARALMGVGGAAIMPVTLSIISNVFDPRERGRAIGVWAGAVGLAVAIGPILGGALLEHY 168
                 567899****************************************************999 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.015
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
        OATP 132 vllfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGf.llGslllklyvd 197
                 + ++++  ll+GiG + i++ ++  i     ++++ +  ++  ++r +  alG  +lGs+l  +y d
  KIR61170.1 361 IWVVLVVFLLQGIGMANIMPPATESIMSALPREKAGVGSAVSNTVRQVAGALGVaVLGSVLSAVYRD 427
                 457888899********************************************83589999999977 PP

>> DUF2275  Predicted integral membrane protein (DUF2275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       5.6   1.3e+04      35      51 ..      11      27 ..       9      30 .. 0.80
   2 ?   -2.8   0.0       2.5   5.6e+03      35      51 ..     176     192 ..     169     206 .. 0.84
   3 ?    7.6   0.1    0.0017       3.8      24      59 ..     259     295 ..     250     308 .. 0.84
   4 ?    3.1   0.4      0.04        90      35      57 ..     335     357 ..     323     450 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 5.6
     DUF2275 35 rklalaglivlilAavg 51
                r++a+ g+ v+ l +v+
  KIR61170.1 11 RRWAILGVLVISLLVVV 27
                89999999999887665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.5
     DUF2275  35 rklalaglivlilAavg 51 
                 + +++ +++v+ +A+++
  KIR61170.1 176 INVPVVAVGVVLVALLV 192
                 5689999****999876 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0017
     DUF2275  24 p.llvrlflrlkrklalaglivlilAavgfgvvsyat 59 
                 p l vrlf+  + + ++a++++++ Aa+g+ ++s+ +
  KIR61170.1 259 PsLDVRLFRVPRFAAPVALVGLVFFAAMGVMFFSSFY 295
                 44789************************99999844 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.04
     DUF2275  35 rklalaglivlilAavgfgvvsy 57 
                 r++a+ gl++ ++A+++f ++  
  KIR61170.1 335 RAVAAVGLALTAVALAAFAFIDA 357
                 789999999*******9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.39
# Mc/sec: 4000.96
//
Query:       KIR61171.1  [L=202]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-19   69.6   2.0    2.7e-19   69.6   2.0    1.6  2  TetR_C_11  Tetracyclin repressor-like, C-terminal domain
    5.8e-12   45.2   0.1      1e-11   44.4   0.1    1.4  1  TetR_N     Bacterial regulatory proteins, tetR family
    0.00013   21.9   0.0    0.00024   21.1   0.0    1.4  1  TetR_C_7   AefR-like transcriptional repressor, C-terminal do
     0.0023   18.2   0.4       0.02   15.1   0.0    2.2  2  TetR_C_6   BetI-type transcriptional repressor, C-terminal
     0.0023   18.0   0.1      0.011   15.8   0.1    2.1  1  HTH_7      Helix-turn-helix domain of resolvase
     0.0037   17.2   0.1     0.0059   16.5   0.1    1.3  1  HTH_6      Helix-turn-helix domain, rpiR family
  ------ inclusion threshold ------
      0.015   15.9   0.8      0.043   14.4   0.2    1.9  2  HTH_32     Homeodomain-like domain


Domain annotation for each model (and alignments):
>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.4   6.3e+03      82      85 ..      30      33 ..      14      52 .. 0.53
   2 !   69.6   2.0     1e-22   2.7e-19       4     111 ..      86     193 ..      83     195 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.4
   TetR_C_11 82 vldl 85
                 ldl
  KIR61171.1 30 TLDL 33
                2222 PP

  == domain 2  score: 69.6 bits;  conditional E-value: 1e-22
   TetR_C_11   4 tGslrgDLrallralaealaspragallrallaeaqrdpelaealrerlleprraalravlrrAvarGelradadvelvldlllgpllyrllltge.pl 101
                   s+r+DL+ l+ a+  +++  ra++++++l+ e+ r+p+  + ++  +++prr+ +r+vlrr+v+ Gelrad+d+e++++ll+gp+l++ +l+   +l
  KIR61171.1  86 GHSVRDDLVLLVGAVGHNIDP-RAAKIMPCLVPEVNRSPDHFRLYQN-IIAPRRQLMREVLRRGVRLGELRADLDIEVAMALLTGPMLMQRMLRWHpEL 182
                 569************999988.9******************999999.****************************************99888877356 PP

   TetR_C_11 102 ddaf.aerlvd 111
                 dd +  +r+vd
  KIR61171.1 183 DDVLlPDRIVD 193
                 66541477776 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.1   3.9e-15     1e-11       1      46 [.      26      72 ..      26      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 3.9e-15
                HHHHHHHHHHHHH.TTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHH CS
      TetR_N  1 IldaArelfaerG.ydattvreIAkrAGvskgalYryFpsKeeLlea 46
                I++a++ l+ae   ++a+++++IA+rAGv+k+++Yr++p+K++Ll+ 
  KIR61171.1 26 IVEATLDLLAEGStIEALSIEAIAARAGVGKATIYRRWPGKDALLLD 72
                789999999998757*****************************975 PP

>> TetR_C_7  AefR-like transcriptional repressor, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   9.5e-08   0.00024      15      99 ..     104     184 ..      95     197 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 9.5e-08
                 T-HHHHHHHHHHHHHHHT-HHHHCCHHHT.T----HHHHHHHHHHHHTTSB-SS.-HHHHHHHHHHHHHHHHTHHHHHH------H CS
    TetR_C_7  15 lspevlalaRlviaeaerfPelarafyeagpgrveealaayLeaavaaGrLrid.DpelAAeqflgllkgelfwprlfgveeppse 99 
                 ++p++++++  ++ e+ r+P+  r + +  ++++++ ++++L++ v+ G+Lr+d D+e+A     +ll+g ++++r++  ++++++
  KIR61171.1 104 IDPRAAKIMPCLVPEVNRSPDHFRLYQNI-IAPRRQLMREVLRRGVRLGELRADlDIEVAM----ALLTGPMLMQRMLRWHPELDD 184
                 68899999999************988775.*****************************95....678888888888887777665 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.24     6e+02      31      74 ..       8      47 ..       4      54 .. 0.56
   2 !   15.1   0.0   7.7e-06      0.02      19      80 ..     105     167 ..      94     169 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.24
                HHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSTHHH CS
    TetR_C_6 31 aeaardpelaelqrenyarlrsnlrallaelaegglradadaea 74
                aea+r+p  + + +++++++ +   +llae+      ++   ea
  KIR61171.1  8 AEAPRSP-GRPRSSRADEAIVEATLDLLAEGST---IEALSIEA 47
                5566666.4555556666666666666666555...44444444 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 7.7e-06
                 HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHH.TTSCTTSTHHHHHHHHH CS
    TetR_C_6  19 rraelavwlafwaeaardpelaelqrenyarlrsnlrallaelae.gglradadaeaaAerla 80 
                 ++++++++  ++ e+ r+p+  +l++   a  r++ r++l+++++ g+lrad d e a + l+
  KIR61171.1 105 DPRAAKIMPCLVPEVNRSPDHFRLYQNIIAPRRQLMREVLRRGVRlGELRADLDIEVAMALLT 167
                 6777788888889999****************************************9988775 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   4.2e-06     0.011      15      43 ..      31      64 ..      15      66 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.2e-06
                GSSTTTT-.....-STTTSSSS---SSSS--SS- CS
       HTH_7 15 vkLleeGi.....siskIAkevnisRsTvYRyla 43
                + Ll+eG+     si +IA + +++++T+YR ++
  KIR61171.1 31 LDLLAEGStiealSIEAIAARAGVGKATIYRRWP 64
                55666665122225789**************887 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   2.3e-06    0.0059      25      53 ..      33      61 ..      19      62 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.3e-06
                HHH-S---TT--HHHHHHHTT--HHHHHH CS
       HTH_6 25 ilaspdkaielsikalAkaaavSeativr 53
                +la+ +++ +lsi+a+A+ a+v++ati r
  KIR61171.1 33 LLAEGSTIEALSIEAIAARAGVGKATIYR 61
                7999***********************88 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   1.7e-05     0.043      20      73 .]      10      63 ..       4      63 .. 0.82
   2 ?   -0.9   0.0         1   2.6e+03      39      50 ..     164     181 ..     135     193 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
      HTH_32 20 rprr.grpr..klsdevrariiallreep...rWsprqlaarlaeregvkvShstvyriL 73
                +pr+ grpr  + +++ +++ ++ll e +   ++s + +aar        v + t+yr +
  KIR61171.1 10 APRSpGRPRssRADEAIVEATLDLLAEGStieALSIEAIAARA------GVGKATIYRRW 63
                4555489998899999999999999766678899*******99......7********76 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1
      HTH_32  39 allreep.......rWspr 50 
                 all + p       rW+p+
  KIR61171.1 164 ALL-TGPmlmqrmlRWHPE 181
                 344.555666666788886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:01.07
# Mc/sec: 569.04
//
Query:       KIR61172.1  [L=639]
Description: diguanylate phosphodiesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-19   69.2   2.4    3.5e-19   68.3   0.0    2.8  4  HTH_30    PucR C-terminal helix-turn-helix domain
      2e-18   67.0   1.0      2e-18   67.0   1.0    3.2  3  GAF_2     GAF domain
      9e-16   58.7   0.1    3.2e-15   56.9   0.1    2.0  1  GAF       GAF domain
    6.6e-15   55.4   4.5    6.6e-15   55.4   4.5    4.2  4  GGDEF_2   GGDEF-like domain
    4.3e-12   46.5   0.7    9.5e-11   42.2   0.0    2.9  2  GAF_3     GAF domain
     0.0025   17.7   0.0      0.019   14.9   0.0    2.7  1  HTH_1     Bacterial regulatory helix-turn-helix protein, lysR
  ------ inclusion threshold ------
      0.078   12.8   1.2       0.21   11.4   0.0    2.4  2  HTH_23    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       4.7   1.2e+04      34      44 ..      92     102 ..      91     106 .. 0.83
   2 ?   -4.2   0.3       6.2   1.6e+04      11      21 ..     249     259 ..     248     260 .. 0.83
   3 ?   -1.8   0.0       1.1   2.9e+03      38      51 ..     410     423 ..     405     425 .. 0.77
   4 !   68.3   0.0   1.4e-22   3.5e-19       1      59 []     573     631 ..     573     631 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.7
                 HHHHHHHS--T CS
      HTH_30  34 rrieellgldl 44 
                 +r++ llg d+
  KIR61172.1  92 HRARHLLGADV 102
                 68999999997 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 6.2
                 TTT-HHHHHHH CS
      HTH_30  11 nggnisatAka 21 
                 ++ +++++A+a
  KIR61172.1 249 HSSSVERAAAA 259
                 78899999997 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.1
                 HHHS--TTSHHHHH CS
      HTH_30  38 ellgldlddpddrl 51 
                 + lg+dld p  ++
  KIR61172.1 410 RRLGVDLDAPHVLV 423
                 579*****998776 PP

  == domain 4  score: 68.3 bits;  conditional E-value: 1.4e-22
                 ...HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHH CS
      HTH_30   1 LleTLraylenggnisatAkaLhvHrnTlryRLrrieellgldlddpddrlaLylAlrl 59 
                 L++TL+ay+  gg+++++A+ LhvH+nT+++RL+r+ +llg d++ p ++l+++lAlrl
  KIR61172.1 573 LVKTLEAYFGVGGSLARAAELLHVHVNTVTQRLERVGQLLGPDWQKPGRALEVQLALRL 631
                 799******************************************************96 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   1.0   7.8e-22     2e-18       2     138 .]      81     224 ..      81     224 .. 0.85
   2 ?    3.5   0.1     0.031        81      89     130 ..     327     366 ..     273     373 .. 0.79
   3 ?   -2.3   0.1         2   5.1e+03      16      69 ..     414     463 ..     402     490 .. 0.55

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 7.8e-22
                 HHHHHHHHHHHHHHHHS.S..EEEEEEE-TTS-...EEEEEEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT--E... CS
       GAF_2   2 adleelldlvldelvel.gaalgyillvdddgg...lrlaawgeaeeefgaaldrplgeglvgealrtgrpvilndleedpdkkglpaghaglrsf... 93 
                 +dl+ +l++++ +++ l ga+++y+ l+dd++g   +r+   +   ++++ +l  p+g+gl g ++++g p + ++++ed++ ++  + +ag++ +   
  KIR61172.1  81 RDLDAVLRAIVHRARHLlGADVAYMTLDDDERGdtyMRVTDGSISARFQRLRL--PMGAGLGGLVAQSGTPYVTANYPEDERFHHTGEIDAGVGEEglv 177
                 69**************76*********99877755566666666666666666..99***99**************99999999999666666666667 PP

                 ..EEEEE-TTS---EEEEES......--HHHHHHHHHHHHHHHHHHH CS
       GAF_2  94 ..lavPlisegrvvGvlnlyankppafdeedlelLeelaeqiaiaie 138
                   l+vPl+ +   +Gvl  +    ++f +e+++lL +la+++a+ai+
  KIR61172.1 178 aiLGVPLRLGSTSIGVLYAANRSARPFAREEVSLLVSLAAHAAVAID 224
                 77*******999******85555555*******************96 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.031
                 TT--EEEEEE-TTS---EEEEES......--HHHHHHHHHHH CS
       GAF_2  89 glrsflavPlisegrvvGvlnlyankppafdeedlelLeela 130
                 + ++f++  ++++ + +G+l+l    ++++ ++d+++Le  a
  KIR61172.1 327 RRGPFWYAAVVAGTENLGALVL--RPDGELVDADQRILERAA 366
                 34555888999999999***99..455559999999999877 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2
                 HHSS..EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B.---TT.HHHHHHHHTS-E CS
       GAF_2  16 velgaalgyillvdddgglrlaawgeaeeefgaaldr.plgeg.lvgealrtgrpv 69 
                 v+l+a ++ +++ d  +   +aa g a+ +  + +   +  +g l   a+r+gr v
  KIR61172.1 414 VDLDAPHVLVAVGD--DA--IAATGSARQRALSWATTyASTRGgL--AAARDGRVV 463
                 44556666666644..44..4433333333322222213344445..556665555 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.1   1.2e-18   3.2e-15       1     133 []      82     223 ..      82     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 1.2e-18
                 SHHHHHHHHHHHHHHHHTESEEEEEE.EEETTEEE....CEEEEECC..EEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTT.HHHHHHHHTTESEEE CS
         GAF   1 dleelldtvveelrellgadrvalyl.pdydGlhy....dipqasrw..lfmkngrgicgqvlatgqplvipdstpdprfaqy.nrrdllenmgirssl 91 
                 dl+ +l+ +v ++r+llgad +   l +d+ G +y    d + ++r+  l+ + g g+ g v+++g p v +++ +d+rf ++ +    +++ g ++ l
  KIR61172.1  82 DLDAVLRAIVHRARHLLGADVAYMTLdDDERGDTYmrvtDGSISARFqrLRLPMGAGLGGLVAQSGTPYVTANYPEDERFHHTgEIDAGVGEEGLVAIL 180
                 899*****************9888776666666668777666677777655555666558*************99*******997788999******** PP

                 EEEEEETTEEEEEEEEEESSS.CSHHHHHHHHHHHHHHHHHHH CS
         GAF  92 vvPlvndgelwGllvlhnpsp.pftreelellqvladqvaval 133
                 +vPl+ +   +G+l++ n+s+ pf ree+ ll +la+++ava+
  KIR61172.1 181 GVPLRLGSTSIGVLYAANRSArPFAREEVSLLVSLAAHAAVAI 223
                 ******************88889******************98 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.3      0.86   2.2e+03      33      57 ..      82     107 ..      18     112 .. 0.68
   2 ?   -0.1   0.3      0.41   1.1e+03      23      54 ..     218     246 ..     209     286 .. 0.52
   3 ?    0.9   0.5       0.2   5.1e+02      13      43 ..     287     318 ..     285     380 .. 0.63
   4 !   55.4   4.5   2.6e-18   6.6e-15       6     115 ..     402     516 ..     397     517 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.86
     GGDEF_2  33 daerllraleealral.gpdalvavr 57 
                 d +++lra+ + +r+l g d+ +++ 
  KIR61172.1  82 DLDAVLRAIVHRARHLlGADVAYMTL 107
                 45557777777777776666666555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.41
     GGDEF_2  23 yvvvvieleedaerllraleealral.gpdalv 54 
                 +++v+i+++    rll++ ++al++l + +  +
  KIR61172.1 218 HAAVAIDTA----RLLAETQAALAELsAANTTI 246
                 566666665....34444444443332222222 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.2
     GGDEF_2  13 rrlgldldgpyvvvvielee.daerllralee 43 
                 ++l ld +g++++ v +++e d+ +l++a+++
  KIR61172.1 287 ALLALDAHGRRLARVGQIDEpDRADLVEAVAA 318
                 67889999999999***998665555555543 PP

  == domain 4  score: 55.4 bits;  conditional E-value: 2.6e-18
     GGDEF_2   6 e.ellerarrlgldldgpyvvvvielee...daerllraleealral.gpdalvavrgdrlvlllpaedeedae.allerlarrlgglsvriGiGspve 98 
                   +l+ rarrlg+dld+p+v v++  +    ++++ +ral+ a   +  ++ l+a r++r+vl+lp++d+  a+ a+ ++l+r +g+ +v++G+++p +
  KIR61172.1 402 TdALRTRARRLGVDLDAPHVLVAVGDDAiaaTGSARQRALSWATTYAsTRGGLAAARDGRVVLMLPGRDAGGAArAVSRDLSRVTGR-PVTAGASGPST 499
                 3489****************9999987766333333344444443335799******************855553888888888888.*********** PP

     GGDEF_2  99 glaglrrSyreArrAlr 115
                 ++a l+  ++eA r+l 
  KIR61172.1 500 DPASLAAIFQEADRCLT 516
                 **************995 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   3.7e-14   9.5e-11       1     128 [.      82     224 ..      82     225 .. 0.79
   2 ?    1.6   0.1      0.13   3.4e+02      16      95 ..     280     343 ..     273     374 .. 0.52

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 3.7e-14
       GAF_3   1 sldellekllkllvkllgaevgalllldedgn..klqvaagwdgkpalse...sldedsalarralssgevvsepsfaeedg.............lpdr 81 
                 +ld +l ++++++ +llga+v+   l d+++   +++v+ g+    +  +    l+ +  l  ++++sg +++++ ++e ++               + 
  KIR61172.1  82 DLDAVLRAIVHRARHLLGADVAYMTLDDDERGdtYMRVTDGS---ISARFqrlRLPMGAGLGGLVAQSGTPYVTANYPEDERfhhtgeidagvgeEGLV 177
                 6899*****************999886555442344555554...444444367789999999********9998887766644444444444445559 PP

       GAF_3  82 aalavPLvagrqviGvlalastkprafdaedlelleslArqiataie 128
                 a+l vPL++g+++iGvl++a ++ r+f +e+++ll slA+++a ai+
  KIR61172.1 178 AILGVPLRLGSTSIGVLYAANRSARPFAREEVSLLVSLAAHAAVAID 224
                 9999*****************************************97 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.13
       GAF_3  16 llgaevgalllldedgnklqvaagwdgkpal..sesldedsalarralssgevvsepsfaeedglpdraalavPLvagrqvi 95 
                 ++++  gall ld+ g++l+++ ++d+ ++   +e+ +++s    r + +g +++++ +a+                  + +
  KIR61172.1 280 VTDVLGGALLALDAHGRRLARVGQIDEPDRAdlVEA-VAASRTEGRSVRRGPFWYAAVVAG-----------------TENL 343
                 566666777777777777777766644444300222.122222334444444444444444.................3444 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   7.3e-06     0.019      14      45 ..     585     616 ..     572     627 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.3e-06
                 SSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-S CS
       HTH_1  14 gsftrAAeeLglsqpavsrqikrLEeelgvpL 45 
                 gs++rAAe L++   +v++++ r  ++lg ++
  KIR61172.1 585 GSLARAAELLHVHVNTVTQRLERVGQLLGPDW 616
                 6*************************999665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       2.7   6.8e+03       2      16 ..     359     373 ..     358     382 .. 0.66
   2 ?   11.4   0.0   8.2e-05      0.21       6      40 ..     568     607 ..     565     611 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.7
      HTH_23   2 asereRlrillllae 16 
                 ++ +eR+  + +l+ 
  KIR61172.1 359 QRILERAALVTALLL 373
                 678899998887764 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 8.2e-05
      HTH_23   6 eRlrillllae.....GlsvreIAreLgvsrrTvyrwlkr 40 
                 +R  +l   +e     G s +++A++L+v+ +Tv + l+r
  KIR61172.1 568 RRGTALVKTLEayfgvGGSLARAAELLHVHVNTVTQRLER 607
                 566677777767777799****************987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 4097.24
//
Query:       KIR61173.1  [L=260]
Description: 3-hydroxybutyrate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-46  158.8   2.1    3.9e-46  157.5   2.1    1.6  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    3.1e-43  147.5   0.1    4.8e-43  146.9   0.1    1.3  1  adh_short        short chain dehydrogenase
    7.8e-11   41.9   0.7    2.9e-10   40.0   0.2    2.0  2  Epimerase        NAD dependent epimerase/dehydratase family
    3.5e-08   33.6   0.5    6.9e-08   32.6   0.5    1.5  1  KR               KR domain
    4.3e-07   30.0   0.9    4.3e-07   30.0   0.9    1.5  1  NAD_binding_10   NAD(P)H-binding
    4.8e-05   22.9   0.0    8.7e-05   22.1   0.0    1.4  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    0.00064   19.8   0.2     0.0013   18.9   0.2    1.4  1  AdoHcyase_NAD    S-adenosyl-L-homocysteine hydrolase, NAD bin
     0.0011   19.3   0.5     0.0021   18.3   0.5    1.5  1  TrkA_N           TrkA-N domain
     0.0013   19.2   0.2      0.003   18.1   0.2    1.6  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
     0.0018   17.4   0.0     0.0025   16.9   0.0    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
     0.0018   17.5   0.1     0.0027   16.9   0.1    1.3  1  RmlD_sub_bind    RmlD substrate binding domain
     0.0018   17.7   0.0     0.0028   17.0   0.0    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
     0.0022   18.6   0.1     0.0061   17.2   0.1    1.7  1  Methyltransf_11  Methyltransferase domain
      0.004   16.8   0.8     0.0077   15.9   0.7    1.5  1  ApbA             Ketopantoate reductase PanE/ApbA
     0.0047   17.6   0.1       0.01   16.5   0.1    1.5  1  Methyltransf_25  Methyltransferase domain
     0.0087   15.7   3.4      0.012   15.2   3.4    1.7  1  DAO              FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.016   14.4   0.0      0.026   13.7   0.0    1.3  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.017   15.6   0.4      0.028   14.8   0.1    1.6  2  NAD_binding_7    Putative NAD(P)-binding
      0.018   14.3   2.9       0.03   13.6   2.9    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
      0.022   14.6   0.3      0.049   13.5   0.3    1.6  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.041   13.9   0.1      0.082   13.0   0.1    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
      0.042   13.4   0.7      0.071   12.7   0.7    1.4  1  NmrA             NmrA-like family
      0.093   13.0   1.8       0.22   11.8   1.8    1.7  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
        1.3    7.6   3.5          2    7.0   3.5    1.2  1  HI0933_like      HI0933-like protein


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.5   2.1   5.2e-49   3.9e-46       5     234 .]      29     258 ..      25     258 .. 0.90

  Alignments for each domain:
  == domain 1  score: 157.5 bits;  conditional E-value: 5.2e-49
                   SHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHH CS
  adh_short_C2   5 gIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldv 101
                   gIGra+A +la++Ga+v++ d++ +a   +ee+a+  g +++++D +d+++v++l ++       +Di+vnnag  +   +p+ +++ e f+ ++ v
    KIR61173.1  29 GIGRACALRLAAAGARVLVLDRDADA---AEEIAALAGGRAVRVDLADPAAVDRLDAD-------VDIVVNNAGLQHV--APVQDFPPERFAYIHRV 113
                   9************************9...7888888899***********99998765.......8************..***************** PP

                   HTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTT.........HH CS
  adh_short_C2 102 nlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla.asgikg.........fd 186
                    + + f+++++alp + ++g g++vn+ssv++ r+ p  +ay  aK+ale+l++ +A e +++g++ N++ p +++T + +++i++         ++
    KIR61173.1 114 MVEAPFRIVRRALPhMYARGwGRVVNISSVHGLRASPYKSAYVSAKHALEGLSKVVALEGAAHGVTANCINPAYVRTALvQDQIADqaathgigeTE 210
                   **************5445559********************************************************87444454433222332266 PP

                   HHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 187 elleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                    +++ + ara ++rl++peevae+ ++L+ + a++itG+ ++ DgG+t
    KIR61173.1 211 VVEKIMLARAAIKRLIEPEEVAELLAYLCAPPAAFITGASIALDGGWT 258
                   6888999***************************************97 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   0.1   6.4e-46   4.8e-43       2     193 ..      20     199 ..      19     201 .. 0.96

  Alignments for each domain:
  == domain 1  score: 146.9 bits;  conditional E-value: 6.4e-46
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 ++lvtG+++GIGra+a +la++Ga+v+v+dr ++++ee+a+  +       a++vD++d ++v++l +++       d++vnNAG+++++p++++  e+
  KIR61173.1  20 TALVTGGGGGIGRACALRLAAAGARVLVLDRDADAAEEIAALAGG-----RAVRVDLADPAAVDRLDADV-------DIVVNNAGLQHVAPVQDFPPER 106
                 89********************************99999998886.....79**********99998876.......********************** PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTH CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelrek 193
                 +  +  v + ++f ++r +lp+m ++ +Gr+vn+sSv+g+ +++  +aY ++K+a++gl++ +a e a +g++ n+++P++v+T++++++ ++
  KIR61173.1 107 FAYIHRVMVEAPFRIVRRALPHMYARGWGRVVNISSVHGLRASPYKSAYVSAKHALEGLSKVVALEGAAHGVTANCINPAYVRTALVQDQIAD 199
                 **************************************************************************************9987665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.2   3.9e-13   2.9e-10       1     119 [.      21     144 ..      21     187 .. 0.69
   2 ?   -0.0   0.1      0.67     5e+02      52      59 ..     199     206 ..     154     252 .. 0.51

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 3.9e-13
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC...EEEE--TT-HHHHHHHHHHHT-SEEEE--S.---HHHHHHSHHHHHHHHTHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl...elveldltdrsalerlfkeeqpdavihlAa.vggvaassedpadfieknlqgt 95 
                 +lVtG+ G iG+a + +l+++g +v++ldr+   ++ ++++ l   + v++dl d++a++rl +  ++d+v++ A+ +   +++   p++f++++ +++
  KIR61173.1  21 ALVTGGGGGIGRACALRLAAAGARVLVLDRDA--DAAEEIAALaggRAVRVDLADPAAVDRLDA--DVDIVVNNAGlQHVAPVQDFPPERFAYIHRVMV 115
                 59*****************************4..444555555779***************976..8*********66666677777788887665554 PP

                 HHHHHHHH.......HHTCTEEEEEEEGGGG CS
   Epimerase  96 lnlleaar.......kagvkrllflsSsevY 119
                    +  +r       ++g  r++++sS  v 
  KIR61173.1 116 EAPFRIVRralphmyARGWGRVVNISS--VH 144
                 444444441112222556668888888..33 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.67
                 -HHHHHHH CS
   Epimerase  52 drsalerl 59 
                 d++a++ +
  KIR61173.1 199 DQAATHGI 206
                 22222222 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.5   9.2e-11   6.9e-08       2     168 ..      20     174 ..      19     189 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 9.2e-11
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 t l+tGG Gg+G++ a  la+ gar lvl  R+    +d++++ia+l+      ++v++D++d++av +l ++++        v++ Ag+ + +++++ 
  KIR61173.1  20 TALVTGGGGGIGRACALRLAAAGARVLVL-DRD----ADAAEEIAALAG----GRAVRVDLADPAAVDRLDADVD-------IVVNNAGLQHVAPVQDF 102
                 579*********************99987.566....567778888876....467899********99987776.......79*************** PP

                 -HHHHHHHHTTTTHH.HHHHHHHTTT...S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkG.awnLhelled...esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqgl 168
                   e+++ + +  v++  + + ++l++   +    +v +SS+ gl  s+ +++Y +a + l++l +  + +g+
  KIR61173.1 103 PPERFAYIHRVMVEApFRIVRRALPHmyaRGWGRVVNISSVHGLRASPYKSAYVSAKHALEGLSKVVALEGA 174
                 *************993467778888877778889***************************99887766654 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.9   5.8e-10   4.3e-07       1     103 [.      25     147 ..      25     171 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 5.8e-10
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC....HHHH.............. CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggk....deeg.............. 77 
                     G+ G++Gr+ + +l+a+g  +v +l R+++ ++e++a +g ++v +d+ d++++ +  +++d+Vv ++g ++     d                 
      KIR61173.1  25 GGGGGIGRACALRLAAAG-ARVLVLDRDADAAEEIAALAGGRAVRVDLADPAAVDRLDADVDIVVNNAGLQHVapvqD--Fpperfayihrvmve 116
                     899**************5.9****************99******************************7766655430..144455666777778 PP

                     .....HHHHHHHHHHCT--EEEEEEETTTTS CS
  NAD_binding_10  78 .....aknivdaakeagvkRfvlvsaigvgd 103
                          +++++  + + g  R+v +s+++  +
      KIR61173.1 117 apfriVRRALPHMYARGWGRVVNISSVHGLR 147
                     8888899999999999999999999976554 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.2e-07   8.7e-05       1      90 [.      22      98 ..      22     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.2e-07
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHH CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdv 90
                   L+TG+ G iG   a +L + g +v +++r++++  +++i++la           + +++Dl D ++++rl a+v  d v+n A+  hV+ 
     KIR61173.1 22 LVTGGGGGIGRACALRLAAAGARVLVLDRDADA--AEEIAALAGG---------RAVRVDLADPAAVDRLDADV--DIVVNNAGLQHVAP 98
                   9************************99988876..7899999863.........4699************7776..99*********985 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   1.7e-06    0.0013      19      92 ..      14      97 ..      10     106 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.7e-06
                   S--TTSEEEEE--.SHHHHHHHHHHHHCT-EEEEE-S-HHHHHH.HHCTT-EE--........HHHCTTT-SEEEE-SSSSSSB CS
  AdoHcyase_NAD 19 vllaGkvavvaGy.GdvGkGcaaslkglGarvivtevdPicalq.aameGfevvt........leevvkkadivvtttGnkdii 92
                   v laG++a+v+G  G +G+ ca  l ++Garv+v + d  +a   aa+ G + v+        ++ + +++divv  +G + + 
     KIR61173.1 14 VDLAGRTALVTGGgGGIGRACALRLAAAGARVLVLDRDADAAEEiAALAGGRAVRvdladpaaVDRLDADVDIVVNNAGLQHVA 97
                   5689****99875268******************98887666432444444444401111111444556677788777777765 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.5   2.9e-06    0.0021       5      60 ..      26      82 ..      22      90 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.9e-06
                S-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTT.SEEEES-TTSHHHHHHTTG CS
      TrkA_N  5 GlGrvGrslaeeLseggkdvvvidkdeerveelreeg.levvvgdatdeevLeeagi 60
                G G +Gr+ a +L ++g +v+v d+d +++ee+++    ++v  d +d+++++++++
  KIR61173.1 26 GGGGIGRACALRLAAAGARVLVLDRDADAAEEIAALAgGRAVRVDLADPAAVDRLDA 82
                899************6657**************9877699*********99998765 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.2     4e-06     0.003       6      57 ..      26      73 ..      20      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4e-06
                   TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHH CS
  F420_oxidored  6 GaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdnee 57
                   G+G +g+a a++l+aag     ++v  +r+ + aee+a+ +g ++  vd ++
     KIR61173.1 26 GGGGIGRACALRLAAAG---ARVLVL-DRDADAAEEIAALAGGRAVRVDLAD 73
                   99***************...****66.*************997777766665 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.3e-06    0.0025       1      82 [.      22      99 ..      22     116 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.3e-06
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagk 82
                +vtGg+G +Gra   +L  ++    v vlD + +    ee+  +     + +D+ d + +++   +vd+v+  a+l+ va +
  KIR61173.1 22 LVTGGGGGIGRACALRLAAAGA--RVLVLDRDAD--AAEEIAALAGGRAVRVDLADPAAVDRLDADVDIVVNNAGLQHVAPV 99
                69*****************995..6666665554..4456666666669**************************9998765 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   3.6e-06    0.0027       3      66 ..      21      98 ..      19     126 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.6e-06
                   EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT................T--TTSHHHHHHHHHHH--SEEEE------HHH CS
  RmlD_sub_bind  3 ilvtGanGqlGseLakqlaeeglevlaltre................eldltdaeavaellkeakpdvvvnaAAytavDk 66
                    lvtG++G +G++ a +la++g+ vl l+r+                ++dl+d++av++l ++   d+vvn A  + v  
     KIR61173.1 21 ALVTGGGGGIGRACALRLAAAGARVLVLDRDadaaeeiaalaggravRVDLADPAAVDRLDAD--VDIVVNNAGLQHVAP 98
                   69*********************************************************9555..999***998877765 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.7e-06    0.0028      30      77 ..      12      60 ..       4      95 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.7e-06
                  SBS-GTTSEEEEES-.SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHH CS
  2-Hacid_dh_C 30 lgkelsgktvGiiGl.GrIGqavakrlkafgmkviaydrskkkeeeeee 77
                     +l+g+t  + G  G IG+a a rl+a g++v++ dr  ++ ee ++
    KIR61173.1 12 VHVDLAGRTALVTGGgGGIGRACALRLAAAGARVLVLDRDADAAEEIAA 60
                  567899999999875278**********************997774443 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   8.1e-06    0.0061       6      87 ..      29     113 ..      22     116 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.1e-06
                      TTSHH.HHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-....CCHHHHHHHHHHH CS
  Methyltransf_11   6 GtGrl.aealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv....edpekalkeiaRv 87 
                      G Gr  a  la +garv+ +D ++ + +   + a ++   v++  ad   +   d+ +D+vv +  l+hv    + p + ++ i+Rv
       KIR61173.1  29 GIGRAcALRLAAAGARVLVLDRDADAAEEIAALAGGRA--VRVDLADPAAVDRLDADVDIVVNNAGLQHVapvqDFPPERFAYIHRV 113
                      34433123344678*************99999999998..78888999999999****************77766777778888887 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.7     1e-05    0.0077       5      37 ..      26      59 ..      23      88 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1e-05
                S-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHH CS
        ApbA  5 GaGaiGsllaakLakagadvtlilrsr.rlealk 37
                G G+iG+ +a +La+aga v +++r++  +e++ 
  KIR61173.1 26 GGGGIGRACALRLAAAGARVLVLDRDAdAAEEIA 59
                89*************************8888854 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.4e-05      0.01       5      81 ..      27     101 ..      23     116 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.4e-05
                      T-TTSH.HHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSH.HH CS
  Methyltransf_25   5 GcGtGr.ltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsd.ed 81 
                      G G Gr  +l+la++ g a+v+ +D ++++ e++++ a   g  v++  +d  +++  d+ +D+vv + +l+h+ + +d
       KIR61173.1  27 GGGIGRaCALRLAAA-G-ARVLVLDRDADAAEEIAALAG--GRAVRVDLADPAAVDRLDADVDIVVNNAGLQHVAPvQD 101
                      456665245667777.5.******************994..458999999*****************766999653144 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   3.4   1.6e-05     0.012       6      35 ..      26      57 ..      26     257 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.6e-05
                CTSHHHHHHHHHHHHTT..EEEEESSSSTTSS CS
         DAO  6 GGGiiGlstAyeLarrg..Vtllekgdiagsg 35
                GGG iG ++A+ La++g  V++l+++ +a+++
  KIR61173.1 26 GGGGIGRACALRLAAAGarVLVLDRDADAAEE 57
                9*************************999963 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.4e-05     0.026       2      98 ..      22     104 ..      21     109 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.4e-05
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHHH CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlvee 95 
                      lvtG+gG iG++   ++++   +++++l+rd  +  ei+         + +  +      d++d + ++++    +vd+v++ A l hV  v+ 
       KIR61173.1  22 LVTGGGGGIGRACALRLAAA-GARVLVLDRDADAAEEIAALA----GGRAV--R-----VDLADPAAVDRLDA--DVDIVVNNAGLQHVAPVQD 101
                      8*********9977776665.5689999***99999999865....23333..2.....57888888888766..9999999999999987777 PP

                      SHH CS
  Polysacc_synt_2  96 npl 98 
                      +p 
       KIR61173.1 102 FPP 104
                      665 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   3.8e-05     0.028       3      51 ..      14      62 ..      12     126 .. 0.75
   2 ?   -2.1   0.0       7.3   5.5e+03      70      70 ..     198     198 ..     150     236 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.8e-05
  NAD_binding_7  3 ldlkgkkvlvvGg.GevAarkvrklleagakvtvvapevkeeleelvkla 51
                   +dl g++ lv Gg G ++   + +l++aga+v v++ +  +++ee+  la
     KIR61173.1 14 VDLAGRTALVTGGgGGIGRACALRLAAAGARVLVLDRDA-DAAEEIAALA 62
                   7999******986268********************995.3344333332 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 7.3
  NAD_binding_7  70 d 70 
                     
     KIR61173.1 198 A 198
                    2 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.9     4e-05      0.03      35      98 ..      26      90 ..      10      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4e-05
                 STSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCECEEHCHHHHHHHHHHHH-SEEEE- CS
  AlaDh_PNT_C 35 GgGvaGlqAiatakglgakVtvlDvrparleqles.lgakfvevlksqeellaeavkeadvvigt 98
                 GgG  G + +   ++ ga+V vlD +++++e++ +  g++ v+v  ++ +++++  +++d+v+  
   KIR61173.1 26 GGGGIGRACALRLAAAGARVLVLDRDADAAEEIAAlAGGRAVRVDLADPAAVDRLDADVDIVVNN 90
                 5566677777777788*******************999************************975 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   6.5e-05     0.049       6      42 ..      26      62 ..      21     100 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.5e-05
                --SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHH CS
     3HCDH_N  6 GaGtmGagiaavfasagleVvlvdiseealekaleki 42
                G G +G+  a  +a+ag +V ++d++++a+e+ ++ +
  KIR61173.1 26 GGGGIGRACALRLAAAGARVLVLDRDADAAEEIAALA 62
                7899*************************99877655 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   0.00011     0.082       9      66 ..      15      72 ..      10      97 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00011
                  ..TT-EEEEES-.SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEG CS
  Shikimate_DH  9 slkekkvlliGa.GemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkl 66
                  +l+++++l+ G  G +++  a  L+a+g++ v+v+ R+ + a+e+a   +g  +++   
    KIR61173.1 15 DLAGRTALVTGGgGGIGRACALRLAAAGAR-VLVLDRDADAAEEIAALAGGRAVRVDLA 72
                  5778888998751679999999*******9.***************9998875554433 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.7   9.5e-05     0.071       2      74 ..      22      93 ..      21     101 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.5e-05
                EESSTTSHHHHHHHHHHHHHT-EEEEEES-S.-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---G CS
        NmrA  2 lviGaTGrqGksvvrallkaghkvralvRdt.kselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgf 74
                lv+G+ G +G++ +  l++ag +v +l Rd    e++++l  aG   v  dl d + ++++  +vd v  + g+
  KIR61173.1 22 LVTGGGGGIGRACALRLAAAGARVLVLDRDAdAAEEIAAL--AGGRAVRVDLADPAAVDRLDADVDIVVNNAGL 93
                79********************999998887334445544..699999******************99988775 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.8   0.00029      0.22       3      30 ..      26      53 ..      25      74 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00029
                   --SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8  3 GaGlsGlvaAylLakagfdvlllekrdr 30
                   G+G  G ++A +La ag++vl+l++  +
     KIR61173.1 26 GGGGIGRACALRLAAAGARVLVLDRDAD 53
                   89999*******************9876 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.5    0.0027         2       7      46 ..      26      65 ..      20      69 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0027
                 --SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT CS
  HI0933_like  7 GgGaAGlmaAisaakrgkrVlllekakklgrKilisGgGr 46
                 GgG  G  +A+++a++g+rVl+l++   +++ i+   gGr
   KIR61173.1 26 GGGGIGRACALRLAAAGARVLVLDRDADAAEEIAALAGGR 65
                 78889**********************9999998777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 1795.79
//
Query:       KIR61174.1  [L=175]
Description: crossover junction endodeoxyribonuclease RuvC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-50  169.3   0.0    5.4e-50  169.1   0.0    1.0  1  RuvC      Crossover junction endodeoxyribonuclease RuvC


Domain annotation for each model (and alignments):
>> RuvC  Crossover junction endodeoxyribonuclease RuvC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.1   0.0     3e-54   5.4e-50       1     148 []       3     152 ..       3     152 .. 0.98

  Alignments for each domain:
  == domain 1  score: 169.1 bits;  conditional E-value: 3e-54
                 EEEEE--SSEEEEEEEEE.ETTEEEEEEEEEEE---S.-HHHHHHHHHHHHHHHHHHH--SEEEEEE-S----HHHHHHHHHHHHHHHHHHHTTT--EE CS
        RuvC   1 ilGiDPGsrktGygviee.agrklslltsgvirtksd.plserlkavfdaveelldayepdalaieqvffaknvdsvlklaqarGvvilaalereisva 97 
                 +lG+DPG++++G gv+e   gr ++l+++ v+ t+ + +l  rl+++ ++++ l+ +++pda+a+e+vf+++nv +v+++aqa G+++la ++ +++v+
  KIR61174.1   3 VLGVDPGLTRCGVGVVEGvPGRPCTLVAYYVVYTDPGdELPLRLLHLDRSLTDLVAEHRPDAVAVERVFSQHNVRTVMGTAQASGIAVLAGARAGLPVQ 101
                 79***************9789*************98779************************************************************ PP

                 EEEHHHHHHHHTSSTT--HHHHHHHHHHHTT----SS.S-THHHHHHHHHH CS
        RuvC  98 eytpsqvkkavtGigkaekeqvqalvkrlLklkakpkpadaaDalavaith 148
                  ytps+vk+a+tG g+a+k+q++++v+rlL+l + pkpadaaDala+ai+h
  KIR61174.1 102 TYTPSEVKAAITGSGQADKAQMTTMVTRLLRLPEPPKPADAADALALAICH 152
                 **************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 1577.49
//
Query:       KIR61175.1  [L=200]
Description: ATP-dependent DNA helicase RuvA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-19   69.5   0.0    3.4e-19   68.7   0.0    1.4  1  RuvA_N          RuvA N terminal domain
    1.3e-17   64.1   0.1    5.3e-17   62.2   0.1    1.9  2  HHH_5           Helix-hairpin-helix domain
    1.3e-11   44.7   0.3    1.1e-10   41.8   0.0    2.2  2  RuvA_C          RuvA, C-terminal domain
    5.3e-06   26.0   0.3      0.096   12.6   0.1    2.5  2  HHH             Helix-hairpin-helix motif
      4e-05   23.8   0.0      0.056   13.7   0.0    2.3  2  HHH_3           Helix-hairpin-helix motif
     0.0044   17.1   0.0        2.6    8.2   0.0    2.4  2  HHH_2           Helix-hairpin-helix motif
     0.0044   17.3   0.0       0.23   11.9   0.0    2.8  2  IMS_HHH         IMS family HHH motif
  ------ inclusion threshold ------
      0.029   14.7   0.1         12    6.2   0.0    2.7  3  Transposase_20  Transposase IS116/IS110/IS902 family
      0.095   12.9   0.0        1.9    8.8   0.0    2.3  2  Cdd1            Pathogenicity locus
       0.13   12.7   0.1        1.7    9.1   0.1    2.2  2  HHH_8           Helix-hairpin-helix domain
       0.19   11.6   0.2       0.35   10.7   0.2    1.4  1  DUF2642         Protein of unknown function (DUF2642)


Domain annotation for each model (and alignments):
>> RuvA_N  RuvA N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   2.1e-22   3.4e-19       1      60 []       1      61 [.       1      61 [. 0.99

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 2.1e-22
                -EEEEEEEEEEESSCEEEEEETTEEEEEEE-HHHHCC.-TTSEEEEEEEEEEETTEEEEEE CS
      RuvA_N  1 MIaylkGkvvekepdsivvevggvGYevfvplstlss.kegeevklythlivrEdalsLYG 60
                MIa+++G+v++ +pd++vvevggvG  v++ + tl++ ++g+ ++l t+l+vrEd+l+LYG
  KIR61175.1  1 MIASVRGTVTATGPDHAVVEVGGVGLAVHCAPGTLADlRVGQPARLATSLVVREDSLTLYG 61
                ************************************9***********************9 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.2   3.6e+03      16      38 ..      26      47 ..      24      49 .. 0.78
   2 !   62.2   0.1   3.2e-20   5.3e-17       1      57 []      71     129 ..      71     129 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.2
                HHHHTTT--SHHHHHHS-HHHHH CS
       HHH_5 16 lallsaGiesvedlaaadveeLa 38
                la++ a  ++++dl    +++La
  KIR61175.1 26 LAVHCA-PGTLADLRVGQPARLA 47
                566667.8899999988888887 PP

  == domain 2  score: 62.2 bits;  conditional E-value: 3.2e-20
                 -HHHHTSTT--HHHHHHHHTTT--SHH....HHHHS-HHHHHTSTTS-HHHHHHHHHHHHH CS
       HHH_5   1 feeLlsvsGiGpktAlallsaGiesve....dlaaadveeLakipGiGkktAeriilelkd 57 
                 fe+L++ sG+Gp++A a+l     +++    ++a+ad+++L+++pGiGkk Aer++lel+d
  KIR61175.1  71 FELLQTASGVGPRLAQAVLAV--HTPDavrkAIANADTAALTRVPGIGKKGAERLVLELRD 129
                 89*****************99..8877555688999************************8 PP

>> RuvA_C  RuvA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.47   7.7e+02      35      44 ..      93     102 ..      72     110 .. 0.72
   2 !   41.8   0.0   6.8e-14   1.1e-10       4      47 .]     151     197 ..     148     197 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.47
                 HHHHHHHHHC CS
      RuvA_C  35 veelIraALk 44 
                 + +++r+A++
  KIR61175.1  93 TPDAVRKAIA 102
                 6666677665 PP

  == domain 2  score: 41.8 bits;  conditional E-value: 6.8e-14
                 HHHHHHHHHCTS-HHHHHHHHHHHHC...-TTS-HHHHHHHHHCCTT CS
      RuvA_C   4 edaveALlaLGYkekeaekAvakvla...npgasveelIraALklLs 47 
                 e++ +AL++LG+++ +a++Ava+v++   +p  +v  l+++A++lL+
  KIR61175.1 151 EQVRQALVGLGWTAGQADQAVAAVAEtvdGPPPPVPVLLKQAIRLLG 197
                 89*************************9888888***********95 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00017      0.28      10      29 ..      71      90 ..      64      91 .. 0.87
   2 !   12.6   0.1   5.9e-05     0.096       4      26 ..     100     122 ..      98     125 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
                HHHHHTSTT-SHHHHHHHHH CS
         HHH 10 reeLlalPGVGpktAeaIls 29
                +e L++ +GVGp  A+a+l+
  KIR61175.1 71 FELLQTASGVGPRLAQAVLA 90
                688999************97 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.9e-05
                 HHHTSSHHHHHTSTT-SHHHHHH CS
         HHH   4 glipasreeLlalPGVGpktAea 26 
                 ++ +a+ + L+ +PG+G+k Ae+
  KIR61175.1 100 AIANADTAALTRVPGIGKKGAER 122
                 6889**************98876 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0024       3.9      14      32 ..      72      90 ..      71      93 .. 0.91
   2 !   13.7   0.0   3.5e-05     0.056       9      39 ..     102     133 ..      96     135 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0024
       HHH_3 14 eeLqklpGlgpklAknIva 32
                e+Lq+ +G+gp+lA++++a
  KIR61175.1 72 ELLQTASGVGPRLAQAVLA 90
                79*************9986 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3.5e-05
       HHH_3   9 NtAsaeeLqklpGlgpklAknIv.ayReknGp 39 
                   A+ + L+++pG+g+k A+++v + R+  Gp
  KIR61175.1 102 ANADTAALTRVPGIGKKGAERLVlELRDRIGP 133
                 5799*****************87477877776 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0026       4.3      34      63 ..      71     100 ..      64     101 .. 0.83
   2 !    8.2   0.0    0.0016       2.6      28      51 ..     100     123 ..      99     129 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0026
       HHH_2  34 leeLlevddiGeeiAqsivefFeneknrel 63 
                 +e L++  ++G++ Aq++    + +++r+ 
  KIR61175.1  71 FELLQTASGVGPRLAQAVLAVHTPDAVRKA 100
                 7889999***********998888877776 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0016
       HHH_2  28 aLkkasleeLlevddiGeeiAqsi 51 
                 a+++a++  L+ v++iG++ A+  
  KIR61175.1 100 AIANADTAALTRVPGIGKKGAERL 123
                 789****************99875 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.16   2.6e+02      18      29 ..      79      91 ..      79      92 .. 0.88
   2 !   11.9   0.0   0.00014      0.23       4      27 ..      97     123 ..      94     125 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.16
     IMS_HHH 18 GiGgklgek.Lek 29
                G+G++l++  L++
  KIR61175.1 79 GVGPRLAQAvLAV 91
                9*******98876 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00014
     IMS_HHH   4 vkefL..wpl.pitkipGiGgklgekL 27 
                 v++ +  +++  +t +pGiG+k +e+L
  KIR61175.1  97 VRKAIanADTaALTRVPGIGKKGAERL 123
                 5555555556679************98 PP

>> Transposase_20  Transposase IS116/IS110/IS902 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.013        22       2      21 ..      72      91 ..      71     105 .. 0.82
   2 ?    6.2   0.0    0.0077        12       3      24 ..     108     129 ..     106     132 .. 0.90
   3 ?   -1.7   0.0       2.3   3.8e+03      63      83 ..     152     172 ..     150     176 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.013
  Transposase_20  2 elLesipGiGpvtaaallae 21
                    elL++  G+Gp +a a+la 
      KIR61175.1 72 ELLQTASGVGPRLAQAVLAV 91
                    79************998875 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0077
  Transposase_20   3 lLesipGiGpvtaaallaeigd 24 
                     +L+ +pGiG+  a +l+ e++d
      KIR61175.1 108 ALTRVPGIGKKGAERLVLELRD 129
                     799***************9987 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.3
  Transposase_20  63 rlRraLyeaAlaairanpelr 83 
                     ++R+aL+   ++a +a++ ++
      KIR61175.1 152 QVRQALVGLGWTAGQADQAVA 172
                     789999999999887776555 PP

>> Cdd1  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.17   2.8e+02       5      25 ..      71      91 ..      66     104 .. 0.77
   2 ?    8.8   0.0    0.0012       1.9       4      23 ..     105     124 ..     102     128 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.17
        Cdd1  5 lkelqdiPniGkalaedlvel 25
                ++ lq+  ++G++la+ + ++
  KIR61175.1 71 FELLQTASGVGPRLAQAVLAV 91
                45689999*******988654 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0012
        Cdd1   4 alkelqdiPniGkalaedlv 23 
                   ++l+++P+iGk+ ae lv
  KIR61175.1 105 DTAALTRVPGIGKKGAERLV 124
                 5789*************997 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.28   4.5e+02      49      63 ..      74      88 ..      63      93 .. 0.76
   2 ?    9.1   0.1    0.0011       1.7      38      62 ..      97     122 ..      89     127 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.28
                CTTSTT--HHHHHHH CS
       HHH_8 49 ltklpgiGkkiaaki 63
                l+   g+G+++a+ +
  KIR61175.1 74 LQTASGVGPRLAQAV 88
                56689*******976 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0011
                 -SS-HHHH.TTHCTTSTT--HHHHHH CS
       HHH_8  38 lpeeitsl.eeeltklpgiGkkiaak 62 
                   ++i+++  ++lt++pgiGkk a++
  KIR61175.1  97 VRKAIANAdTAALTRVPGIGKKGAER 122
                 5667778643379********99887 PP

>> DUF2642  Protein of unknown function (DUF2642)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00022      0.35      30      49 ..       4      23 ..       2      29 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00022
     DUF2642 30 svrGiLkdvkPDHivveign 49
                svrG++++  PDH vve+g+
  KIR61175.1  4 SVRGTVTATGPDHAVVEVGG 23
                79***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1529.63
//
Query:       KIR61176.1  [L=356]
Description: ATP-dependent DNA helicase RuvB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-73  244.7   0.0    4.8e-73  244.1   0.0    1.2  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    3.5e-31  106.8   1.2    6.3e-31  105.9   1.2    1.5  1  AAA_lid_4        RuvB AAA lid domain
    4.8e-22   77.6   0.0    8.3e-22   76.9   0.0    1.4  1  RuvB_C           RuvB C-terminal winged helix domain
    2.1e-17   63.8   0.0    5.8e-17   62.4   0.0    1.8  2  AAA              ATPase family associated with various cellul
    9.5e-07   29.3   0.8    2.8e-05   24.6   0.1    2.6  3  AAA_16           AAA ATPase domain
    1.1e-06   28.6   0.1    6.4e-05   23.0   0.1    2.3  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00024   21.4   0.2      0.058   13.7   0.0    2.6  2  AAA_22           AAA domain
    0.00032   20.1   1.1       0.16   11.4   0.2    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0007   19.5   0.4     0.0059   16.5   0.1    2.2  2  NTPase_1         NTPase
    0.00078   18.6   0.0     0.0013   17.9   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
     0.0018   18.3   0.0      0.004   17.2   0.0    1.5  1  AAA_14           AAA domain
     0.0026   17.0   0.0      0.017   14.4   0.0    2.0  2  TIP49            TIP49 P-loop domain
     0.0028   17.8   0.0     0.0072   16.5   0.0    1.7  1  AAA_33           AAA domain
     0.0032   17.4   0.0      0.011   15.8   0.0    1.8  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0033   17.3   0.0       0.11   12.4   0.0    2.3  2  AAA_3            ATPase family associated with various cellul
      0.004   16.9   0.0        1.6    8.4   0.0    2.2  2  Sigma54_activat  Sigma-54 interaction domain
     0.0048   17.4   0.0      0.011   16.3   0.0    1.7  1  AAA_18           AAA domain
     0.0051   16.1   0.0     0.0081   15.5   0.0    1.2  1  Zeta_toxin       Zeta toxin
     0.0062   16.9   0.0      0.011   16.1   0.0    1.4  1  RNA_helicase     RNA helicase
  ------ inclusion threshold ------
      0.013   15.9   0.2       0.41   11.0   0.0    2.3  2  AAA_19           AAA domain
      0.015   15.3   0.0      0.021   14.8   0.0    1.2  1  Rad17            Rad17 P-loop domain
       0.02   15.1   0.1      0.054   13.7   0.1    1.8  1  AAA_28           AAA domain
      0.036   13.8   0.2       0.35   10.6   0.2    2.4  1  IstB_IS21        IstB-like ATP binding protein
      0.076   12.1   0.1        2.7    7.0   0.1    2.2  1  MCM              MCM P-loop domain
      0.079   12.9   0.0       0.17   11.8   0.0    1.5  1  NACHT            NACHT domain
       0.16   11.1   0.0       0.38    9.9   0.0    1.5  2  NB-ARC           NB-ARC domain
       0.21   10.7   0.0       0.36   10.0   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
       0.25   11.1   0.0       0.55    9.9   0.0    1.6  1  AAA_24           AAA domain
       0.27   11.0   0.0        0.4   10.4   0.0    1.2  1  AAA_11           AAA domain
       0.27   11.2   0.0         11    6.0   0.0    2.1  2  ResIII           Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.1   0.0   8.1e-76   4.8e-73       1     159 []      24     182 ..      24     182 .. 0.99

  Alignments for each domain:
  == domain 1  score: 244.1 bits;  conditional E-value: 8.1e-76
      RuvB_N   1 lrPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsgPvlekagdlaalltnleekdvlfideihrlsra 99 
                 +rPk+lee+i+q++v+e+l++++++a +r+++ dh+ll+GpPGlGkttla+i+a+elg+ +++tsgP++e++gdlaa+lt+l+e+dvlfideihr+++ 
  KIR61176.1  24 VRPKRLEEFIAQHRVREQLDLLLRSAMRRGSPPDHILLSGPPGLGKTTLANIVAAELGSGIRVTSGPAIERSGDLAAILTSLTEGDVLFIDEIHRIAKP 122
                 6************************************************************************************************** PP

      RuvB_N 100 veevlysamedfrldivigkGpsarsikldlpkftlvgattragllssPlrdrfgivarl 159
                 +ee+lysamedfr+d+++gkGp+a++i ld+++ftlvgattr+gll+ P+rdrfg+va+l
  KIR61176.1 123 AEELLYSAMEDFRVDVIVGKGPGATAIPLDVEPFTLVGATTRSGLLTGPMRDRFGFVAHL 182
                 ********************************************************9986 PP

>> AAA_lid_4  RuvB AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   1.2   1.1e-33   6.3e-31       1      74 []     185     258 ..     185     258 .. 0.99

  Alignments for each domain:
  == domain 1  score: 105.9 bits;  conditional E-value: 1.1e-33
   AAA_lid_4   1 YeeeeLeeivkrsakilgveieeegaaeiarRsRGTPRianrLLrRvrDfaqvkgdgkitkevakkaLellevd 74 
                 Y++++Le +++rsa+ilgv+i+++gaaeia RsRGTPRianrLLrRvrDfa+v++dg++t e+a++aL++++vd
  KIR61176.1 185 YSPADLEVLLRRSARILGVPITDDGAAEIAGRSRGTPRIANRLLRRVRDFAEVRADGTVTVETARAALTVYDVD 258
                 999**********************************************************************9 PP

>> RuvB_C  RuvB C-terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   1.4e-24   8.3e-22       2      71 ..     260     329 ..     259     330 .. 0.98

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 1.4e-24
                 T---HHHHHHHHHHHHT.TT--B-HHHHHHHTT--HHHHHHTTHHHHHHTTSEEEETTEEEE-HHHHHHH CS
      RuvB_C   2 lGLdeldikyLkllkekfkggpvglktlaailgeeketiedviEPyLlkeglIertsrGRilTkkglkyl 71 
                 lGLd+ld+ +  +l ++f+ggpvgl+tla ++ge+ +t+e+v+EP+L++ gl+ rt+rGR +T+ ++++l
  KIR61176.1 260 LGLDRLDRAVVTALVDSFRGGPVGLSTLAVAVGEQPDTVEEVCEPFLVRAGLLARTPRGRVATEAAWRHL 329
                 7********************************************************************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   9.7e-20   5.8e-17       1     128 [.      59     180 ..      59     184 .. 0.95
   2 ?   -2.0   0.0       7.5   4.5e+03      66      97 ..     256     281 ..     216     302 .. 0.56

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 9.7e-20
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +ll+GppG GKT+la+ va elg+ +  +sg+ +       ++ +++++++++ e     +lfiDEi+++ak              + L++++++++ +
  KIR61176.1  59 ILLSGPPGLGKTTLANIVAAELGSGIRVTSGPAIE------RSGDLAAILTSLTEG---DVLFIDEIHRIAKPA-----------EELLYSAMEDFRVD 137
                 69********************************9......9*********99887...5***********999...........9************* PP

                 ...............SSTEEEEEEESSGGGSTHHHHSTTSSEEE CS
         AAA 100 ...............eskvivigatnrpdkldpallrgRfdrki 128
                                 ++++++gat+r   l+ +++ +Rf  + 
  KIR61176.1 138 vivgkgpgataipldVEPFTLVGATTRSGLLTGPMR-DRFGFVA 180
                 ***************666******************.**98765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 7.5
                 TGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTT CS
         AAA  66 EidalaksrsgseseeeervvnqLlteldgvk 97 
                 ++dal+ +r       ++ vv +L+  + g  
  KIR61176.1 256 DVDALGLDR------LDRAVVTALVDSFRGGP 281
                 445555555......44555555555555554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   4.7e-08   2.8e-05       8      62 ..      38      93 ..      31     107 .. 0.76
   2 ?    2.9   0.0      0.21   1.3e+02     127     160 ..     102     132 ..      94     140 .. 0.77
   3 ?   -2.2   0.0         8   4.8e+03     111     128 ..     219     237 ..     186     251 .. 0.60

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 4.7e-08
      AAA_16  8 eleqLlsale.rvrsgrp.elvllsGesGvGKsslvrellralekdggiflrgkcdq 62
                 +eqL  +l+ + r+g+p   +llsG++G GK++l++ ++ +l  +g+ +++g + +
  KIR61176.1 38 VREQLDLLLRsAMRRGSPpDHILLSGPPGLGKTTLANIVAAELG-SGIRVTSGPAIE 93
                56788888887788888899*****************9996665.447666666555 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.21
      AAA_16 127 lallsrderplvlvlDdlqwadeaslqllaaLlr 160
                 l  l++ ++  vl++D+++++     +ll++ ++
  KIR61176.1 102 LTSLTE-GD--VLFIDEIHRIAKPAEELLYSAME 132
                 444444.44..9**********999999998876 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 8
      AAA_16 111 lagaeasrllellkrll.a 128
                  ++ +a+rll+ +++++ +
  KIR61176.1 219 GTPRIANRLLRRVRDFAeV 237
                 2333336666666666633 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   1.1e-07   6.4e-05       1     120 [.      58     162 ..      58     176 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.1e-07
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-S CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeg 99 
                 ++lL GppG gK++la  +aa l++ + +  +++  ++ dl                ++ ++ +eg++l++DE++r+ + + + L s +e+ r+++  g
  KIR61176.1  58 HILLSGPPGLGKTTLANIVAAELGSGIRVTSGPAIERSGDLA---------------AILTSLTEGDVLFIDEIHRIAKPAEELLYSAMEDFRVDVIVG 141
                 789**************************9999955555554...............4455777**************************999998888 PP

                 SSEEE---......-EEEEEE CS
       AAA_5 100 gelvkaknddllerfrviata 120
                 ++    + +   e+f++++++
  KIR61176.1 142 KGPGATAIPLDVEPFTLVGAT 162
                 777655554333336666665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   9.8e-05     0.058       6      29 ..      57      80 ..      51      89 .. 0.86
   2 ?    4.7   0.1     0.056        34      93     122 ..     109     135 ..      94     146 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.8e-05
      AAA_22  6 gilvvtGesGtGKTtllrrlleql 29
                 ++++ G++G GKTtl++ ++ +l
  KIR61176.1 57 DHILLSGPPGLGKTTLANIVAAEL 80
                689**************9988877 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.056
      AAA_22  93 elliiDEaqhlrseealeeLrsllnlsrkg 122
                  +l iDE++++  + a e L s ++  ++ 
  KIR61176.1 109 DVLFIDEIHRI-AKPAEELLYSAME--DFR 135
                 58*********.7777777766666..454 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.2   0.00026      0.16      24      43 ..      58      77 ..      52      85 .. 0.88
   2 !    7.0   0.0    0.0055       3.3     103     137 ..     104     138 ..      88     146 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00026
  Mg_chelatase 24 nlllvGppGsGKtmlakrlp 43
                  ++ll GppG GKt la+ ++
    KIR61176.1 58 HILLSGPPGLGKTTLANIVA 77
                  89**************9775 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0055
  Mg_chelatase 103 slahnGvLfLDElpefkrkvlevLRePledgevti 137
                   sl++  vLf+DE+  + + + e L + +ed +v +
    KIR61176.1 104 SLTEGDVLFIDEIHRIAKPAEELLYSAMEDFRVDV 138
                   677778************************99987 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   9.8e-06    0.0059       1      30 [.      58      86 ..      58      95 .. 0.91
   2 ?    0.7   0.0      0.73   4.3e+02      87     104 ..      99     116 ..      92     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9.8e-06
                EEEEE--TTSSHHHHHHHHHHHH...GGGE CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvlellkssgvkv 30
                +++++GppG GKtTl + v+ +l  sg++v
  KIR61176.1 58 HILLSGPPGLGKTTLANIVAAEL-GSGIRV 86
                799*******************9.777777 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.73
                 HHHHHHHHHH-EEEE--- CS
    NTPase_1  87 ealrkalseadviviDEi 104
                 +a+ ++l+e dv+ iDEi
  KIR61176.1  99 AAILTSLTEGDVLFIDEI 116
                 5566778999*******9 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.1e-06    0.0013     102     155 ..      26      82 ..      16      88 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.1e-06
       T2SSE 102 eltlddlgaeealkekiaevlrkavrerg...lilvsGgTgsGKttllyallkeink 155
                   +l++++a+++++e+++ +lr+a+r+      il+sG+ g GKttl++++ +e+ +
  KIR61176.1  26 PKRLEEFIAQHRVREQLDLLLRSAMRRGSppdHILLSGPPGLGKTTLANIVAAELGS 82 
                 44789999999999********99665323337*****************9998865 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.6e-06     0.004       5      97 ..      59     140 ..      56     142 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6.6e-06
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpe.wekalkslvdegknldviv 97 
                 ++++G+   GKTtl++ ++ el    + i   +    +   + d      +il +l+  +  +lf+DEi+++ + +e+ l s +++  ++dviv
  KIR61176.1  59 ILLSGPPGLGKTTLANIVAAELG---SGIRVTSGPAIER--SGDL----AAILTSLT--EGDVLFIDEIHRIAKpAEELLYSAMEDF-RVDVIV 140
                 6899**********988888887...4444433333333..2233....45555543..5789********9773566666666666.888886 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.8e-05     0.017      24      81 ..      30      87 ..      12      93 .. 0.81
   2 ?   -0.1   0.0      0.71   4.2e+02     281     303 ..     110     132 ..     103     141 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.8e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 24 eglvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelgedvpfv 81
                e ++ q++ re   ++++    +      +Ll+Gp+g Gkt la  ++ elg+ +  +
  KIR61176.1 30 EEFIAQHRVREQLDLLLRSAMRRGSPPDHILLSGPPGLGKTTLANIVAAELGSGIRVT 87
                57899999999998888766666667799***********************998765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.71
                 XXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 281 vlfiDevhmlDiecfsylnrale 303
                 vlfiDe+h +   +   l  a+e
  KIR61176.1 110 VLFIDEIHRIAKPAEELLYSAME 132
                 9*******876555555555555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.2e-05    0.0072       2      31 ..      59      89 ..      59     123 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.2e-05
      AAA_33  2 vllvGlpGsGKstlaerllkklg.avllssd 31
                +ll G+pG GK+tla  ++++lg +++++s 
  KIR61176.1 59 ILLSGPPGLGKTTLANIVAAELGsGIRVTSG 89
                6789********************9999985 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.8e-05     0.011      19      50 ..      56      88 ..      29      91 .. 0.79
   2 ?   -2.1   0.0       6.3   3.8e+03      66      73 ..     179     186 ..     171     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.8e-05
                TEEEEEEESTTSSHHHHHHHHHHHTT--.---- CS
        TsaE 19 gdvilLeGdLGaGKTtlvrglakalgve.evkS 50
                 d ilL+G+ G GKTtl+  +a++lg   +v+S
  KIR61176.1 56 PDHILLSGPPGLGKTTLANIVAAELGSGiRVTS 88
                456***********************9999998 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 6.3
                 EEEEE-TT CS
        TsaE  66 lyHfDlYR 73 
                 + H+D+Y 
  KIR61176.1 179 VAHLDFYS 186
                 89*****6 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00018      0.11       1      26 [.      58      83 ..      58      92 .. 0.90
   2 ?    2.5   0.0      0.21   1.3e+02      64      93 ..     109     138 ..     100     154 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00018
       AAA_3  1 hvllegvPGlaktllvkalakaldle 26
                h+ll g PGl+kt+l++ +a  l+  
  KIR61176.1 58 HILLSGPPGLGKTTLANIVAAELGSG 83
                9*******************999865 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.21
       AAA_3  64 nllladeinrappktqsalleameerqvtv 93 
                 ++l+ dei r +  ++  l  ame+ +v v
  KIR61176.1 109 DVLFIDEIHRIAKPAEELLYSAMEDFRVDV 138
                 7899******9999999999****988865 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.011       6.8      17      43 ..      51      77 ..      34      89 .. 0.77
   2 !    8.4   0.0    0.0027       1.6      91     124 ..     105     138 ..      88     166 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.011
                     HHCTSSS-EEEECSTTSSHHHHHHHHH CS
  Sigma54_activat 17 kvaktdlsvlitGesGtGKellaraih 43
                     +  + + ++l+ G  G GK++la+ + 
       KIR61176.1 51 RRGSPPDHILLSGPPGLGKTTLANIVA 77
                     44445589***************9875 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0027
                      HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEES CS
  Sigma54_activat  91 kadgGtlfLDeigelplelQekLlrvlqegever 124
                       ++g +lf+Dei+++   + e L  ++++ +v  
       KIR61176.1 105 LTEGDVLFIDEIHRIAKPAEELLYSAMEDFRVDV 138
                      56899*****************999999877765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.8e-05     0.011       1      28 [.      59      86 ..      59     134 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.8e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrlgfgvnl 28
                Ill+G+pG GKttla+ ++ +lg+g+++
  KIR61176.1 59 ILLSGPPGLGKTTLANIVAAELGSGIRV 86
                99****************9999874333 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.4e-05    0.0081      11      41 ..      51      81 ..      42      89 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-05
  Zeta_toxin 11 psqerPklillgGqpGAGKselaellkdele 41
                 +++ P+ ill+G pG GK++la+ +++el+
  KIR61176.1 51 RRGSPPDHILLSGPPGLGKTTLANIVAAELG 81
                45589***********************995 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.8e-05     0.011       1      64 [.      59     122 ..      59     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.8e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkde 64 
                   i+l+Gp+g GK+tla+ +a++l + +  ++ + +   +    ++ + t+ +v+ id++ ++ + 
    KIR61176.1  59 ILLSGPPGLGKTTLANIVAAELGSGIRVTSGPAIERSGDLAAILTSLTEGDVLFIDEIHRIAKP 122
                   689*********************9999998888778888888899999999999999887754 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00069      0.41       4      34 ..      49      80 ..      47      92 .. 0.81
   2 ?    2.4   0.0       0.3   1.8e+02      99     126 ..     104     131 ..      93     142 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00069
      AAA_19  4 ave.alkekvllvtaGpGtGKTrvlkhivall 34
                a++  ++ +++l+ ++pG GKT++ + + a+l
  KIR61176.1 49 AMRrGSPPDHILLSGPPGLGKTTLANIVAAEL 80
                6655788899************9988777665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.3
      AAA_19  99 klqeeellivDEfqdvdelqyrLlkall 126
                  l+e+++l++DE+  + + + +Ll   +
  KIR61176.1 104 SLTEGDVLFIDEIHRIAKPAEELLYSAM 131
                 566888***********77777776555 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.5e-05     0.021      43      81 ..      54      92 ..      22     117 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.5e-05
       Rad17 43 rkkriLLisGPsGCgkstvvkvLskelgiklrewlnpvs 81
                 +   +L+sGP+G gk+t  ++++ elg  +r  + p  
  KIR61176.1 54 SPPDHILLSGPPGLGKTTLANIVAAELGSGIRVTSGPAI 92
                34446789********************99888777765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1     9e-05     0.054       2      27 ..      59      87 ..      58     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9e-05
      AAA_28  2 ivitGgestGKTtlleaLaar...gypvv 27
                i ++G+++ GKTtl++  aa+   g++v 
  KIR61176.1 59 ILLSGPPGLGKTTLANIVAAElgsGIRVT 87
                899****************9877777765 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00058      0.35      48     116 ..      57     115 ..      13     135 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00058
   IstB_IS21  48 enivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrdgklaralkrllkvdllilDd 116
                 + i+l Gp+G GK+ la  ++ e   +g++v  ++ +++       +r g la +l++l++ d+l +D+
  KIR61176.1  57 DHILLSGPPGLGKTTLANIVAAEL-GSGIRV--TSGPAI-------ERSGDLAAILTSLTEGDVLFIDE 115
                 5799*************8766542.333333..333322.......34455555555555555555555 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0045       2.7      59     150 ..      58     136 ..      46     143 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0045
                 EEEEEESSTSTHHHHHHHHHHHSSSEE.EEESSSSSSSHSSSEEEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEE CS
         MCM  59 nvllvgdpgtaKsqlLkyveklaprav.ytsgkgssaagLtaavvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqti 150
                 ++ll g pg++K++l + v++ +  ++  tsg +   +g  aa+  +              l ++ v+ iDe+ ++ +  ++ l+ amE+  +
  KIR61176.1  58 HILLSGPPGLGKTTLANIVAAELGSGIrVTSGPAIERSGDLAAILTS--------------LTEGDVLFIDEIHRIAKPAEELLYSAMEDFRV 136
                 56666666666666666655444333313444444444433333322..............23344677777777777777777777776555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00029      0.17       3      26 ..      59      82 ..      57      85 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00029
                EEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT  3 vilqGeaGsGKTtLlqklalawae 26
                ++l G++G GKTtL+  +a ++ +
  KIR61176.1 59 ILLSGPPGLGKTTLANIVAAELGS 82
                899************999988876 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00064      0.38      21      41 ..      57      77 ..      39      83 .. 0.77
   2 ?   -3.7   0.0       9.1   5.4e+03     187     216 ..     270     300 ..     266     301 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00064
                EEEEEEESTTSSHHHHHHHHC CS
      NB-ARC 21 lvvalvGmgGvGKttlakqil 41
                + + l+G +G+GKttla+ + 
  KIR61176.1 57 DHILLSGPPGLGKTTLANIVA 77
                47899***********98765 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 9.1
                 HHHHHHHCTT-HHHHHHHHHHHC-T.CSCCH CS
      NB-ARC 187 akeivekckGlPlalkvlggllstk.ktvee 216
                    +v + +G P+ l++l+ ++  + +tvee
  KIR61176.1 270 VTALVDSFRGGPVGLSTLAVAVGEQpDTVEE 300
                 5667788889999888887776666666665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0006      0.36      24     114 ..      26     114 ..      11     119 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0006
      DUF815  24 evklddLvgidkqkealvente.qfleglpannvLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvellrerperfilfvD 114
                 + +l++++   + +e+l    + ++ +g p  ++LL G  G GK +l   + +e+  +g+r+   +   ++   +l ++l +  e  +lf+D
  KIR61176.1  26 PKRLEEFIAQHRVREQLDLLLRsAMRRGSPPDHILLSGPPGLGKTTLANIVAAELG-SGIRVT--SGPAIERSGDLAAILTSLTEGDVLFID 114
                 5567777777777777766555145689******************9988877764.566664..344555555555555555555666666 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00091      0.55       5      21 ..      59      75 ..      56     135 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00091
      AAA_24  5 iliyGpsgiGKTtlake 21
                il+ Gp+g GKTtla+ 
  KIR61176.1 59 ILLSGPPGLGKTTLANI 75
                899***********975 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00067       0.4       9      72 ..      49     141 ..      38     145 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00067
      AAA_11   9 aiksalseseitliqGPPGtgKTktivellsqll.................sr.............rkseeeksakpriLvCapSNaAvDelle 72 
                 a+++    +   l++GPPG gKT+    + ++l                                  + ++ +++ +++L++a  +  vD+++ 
  KIR61176.1  49 AMRRGSPPD-HILLSGPPGLGKTTLANIVAAELGsgirvtsgpaiersgdlAAiltsltegdvlfiDEIHRIAKPAEELLYSAMEDFRVDVIVG 141
                 333333344.48***********76655555554555565555554444440044444445555543355677777778888887777777776 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.15        90      22      45 ..      54      77 ..      27      84 .. 0.72
   2 ?    6.0   0.0     0.018        11     131     147 ..     106     122 ..      91     143 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.15
                .TTSEEEEEESTTSTHHHHHHHHH CS
      ResIII 22 krdkrglikmaTGtGKTlvaakli 45
                    ++l+  + G GKT +a  ++
  KIR61176.1 54 SPPDHILLSGPPGLGKTTLANIVA 77
                455699***********9985444 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.018
                 TT-SEEEEETGGGTTS. CS
      ResIII 131 drfdviiiDEaHrlgak 147
                 ++ dv++iDE Hr+++ 
  KIR61176.1 106 TEGDVLFIDEIHRIAKP 122
                 5668*********9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 2725.78
//
Query:       KIR61177.1  [L=99]
Description: preprotein translocase subunit YajC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-27   93.4   0.0    7.1e-27   93.1   0.0    1.1  1  YajC      Preprotein translocase subunit


Domain annotation for each model (and alignments):
>> YajC  Preprotein translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.0     4e-31   7.1e-27       5      80 .]       1      74 [.       1      74 [. 0.95

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 4e-31
        YajC  5 plvlifvifyfllirpqqkkqkehkemlasLkkGdeVvtigGivGkvvkvdddevtveigesagvkikversaiar 80
                ++ l+f+++yf++irpqqk+++e + m+++L +GdeVvtigG++G+v+ vdd++v +e++  +gv+++  r aiar
  KIR61177.1  1 MIALLFGVMYFMMIRPQQKRRREAERMQSTLGPGDEVVTIGGLYGTVTGVDDETVLLEVA--PGVQTRYARPAIAR 74
                46799**********************************************999*****4..58**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.36s 00:00:00.88 Elapsed: 00:00:00.55
# Mc/sec: 545.29
//
Query:       KIR61178.1  [L=628]
Description: preprotein translocase subunit SecD [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-09   35.3   9.7    1.3e-08   34.5   9.7    1.3  1  SecD_SecF  Protein export membrane protein
      7e-06   25.2  18.4    1.4e-05   24.2  18.4    1.4  1  MMPL       MMPL family
    0.00057   19.3   0.1     0.0018   17.7   0.0    1.9  2  Sec_GG     SecD/SecF GG Motif
  ------ inclusion threshold ------
       0.12   12.9   0.0       0.23   12.0   0.0    1.4  1  POTRA      Surface antigen variable number repeat
        5.2    6.2   5.7        7.3    5.7   5.7    1.1  1  SOG2       RAM signalling pathway protein


Domain annotation for each model (and alignments):
>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   9.7   3.5e-12   1.3e-08      13     186 ..     419     593 ..     412     596 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 3.5e-12
                 EEEEEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTT....----HHHHHHHHHHTTSSSHHHHHHHHH CS
   SecD_SecF  13 aekisvetvgpsvskelaekavlallialvliliyvalrFewrvalaaiialvhDviitvgvlsllg....ievdlatvaalLtiiGYSvndtvvvfdr 107
                 +e+++ + v ++++    + ++la +i ++l++iy +++++  +++ ++++lv   +++ g+l+ lg    + ++la +a++++ +G   ++ v+ f+r
  KIR61178.1 419 FEAQEQQNVTATLGASHLRAGLLAAGIGMLLVIIYSFFYYRL-LGSVIFLSLVLSGLLVFGALVFLGrqigFTLTLAGIAGMIVSLGVAADSFVIYFER 516
                 67888999***************************9999986.68888889999999999*9999997777889999********************** PP

                 HHHHHHH--SS-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHHHHHH CS
   SecD_SecF 108 vrenlrkkkratlkeiinlslnqtLtrtiltslttllvvvallllggdslkdfalallvGlivgtyssifiasplllll 186
                 +++++r+   ++ + ++ ++        i + ++t++ +v l+++  +++k+fa+al ++ +++ +   ++  p+++++
  KIR61178.1 517 LKDEIRE--GRSPRSAVPRAWIRARRTIISANAITIMSAVVLYIVSVGAVKGFAFALGLATVLDLVVVFLFRHPIMTMF 593
                 ****998..6677788888887765545567889******************************999999999988876 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2  18.4   3.8e-09   1.4e-05     149     310 ..     441     602 ..     426     624 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3.8e-09
        MMPL 149 evvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgl.lvvlliavGtDYallLvsRyreelaagedreeaviravas 246
                  ++++ ++lvi    +   +   ++ l+ v+s l+ +g +++l    g++l  + +g+  +++ ++v++D  ++ + R+++e+++g++ ++av ra  +
  KIR61178.1 441 LAAGIGMLLVIIYSFFYYRLLGSVIFLSLVLSGLLVFGALVFLGRQIGFTL--TLAGIaGMIVSLGVAADSFVIYFERLKDEIREGRSPRSAVPRAWIR 537
                 456666666666666666677778888888898999999555555555555..44455267888*********************************** PP

        MMPL 247 tgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTllPAllvllGraa.lakp 310
                 + ++++ a ++ +++ + L ++++++++++++a++l+ ++d+ +v+ +   +++++ r +   +p
  KIR61178.1 538 ARRTIISANAITIMSAVVLYIVSVGAVKGFAFALGLATVLDLVVVFLFRHPIMTMFARTRaFLSP 602
                 *********************************************99995566666665434344 PP

>> Sec_GG  SecD/SecF GG Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.1e-07    0.0018       9      25 ..      38      54 ..      37      56 .. 0.90
   2 ?   -2.4   0.0       1.1   3.9e+03      12      16 ..     332     336 ..     331     336 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.1e-07
                EE-TTTS-EEEEEEEE- CS
      Sec_GG  9 NLGlDFtGGthielqfd 25
                +LGlD+ GGt+++l++ 
  KIR61178.1 38 RLGLDLVGGTRMTLEAT 54
                7*************987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
                 TTTS- CS
      Sec_GG  12 lDFtG 16 
                 lDF+G
  KIR61178.1 332 LDFKG 336
                 9***9 PP

>> POTRA  Surface antigen variable number repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.5e-05      0.23      29      68 ..      60      94 ..      47     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.5e-05
                SBHCHHHHHHHHHHHHHHHHCTT-EE.EEEEEEHSSTTSE CS
       POTRA 29 dvynpekleadkealksryanlGyfdasVqvelpeddedk 68
                ++ ++e+le++++ +++r ++ G+++a+V++e       +
  KIR61178.1 60 RPPTAENLEEARQIIENRVNAYGVAEAEVVTEG-----NR 94
                566789***********************6644.....22 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.7     0.002       7.3     276     346 ..     135     213 ..      93     264 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.002
        SOG2 276 qssasstPlgegstspp.galsrqslsttgststltsssksrs.......ssrsntnasastprslattpappasaesf 346
                   ++++ P g++s++p+ +a+++ s+s +g+++t + s+  ++       +s++++ +++ +p+s+a+ ++ pa +e++
  KIR61178.1 135 APTPTPAPSGSASPKPSgSAKPSGSASPSGAKATASPSAGGQGggapapsASATPSPSASAAPSSSASAEPVPAGVEEQ 213
                 3344555667777777778888877777777755555555444445554333333323333444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1007  (0.056166); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 4038.03
//
Query:       KIR61179.1  [L=395]
Description: preprotein translocase subunit SecF [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-47  159.8   8.2    7.3e-47  159.2   8.2    1.2  1  SecD_SecF        Protein export membrane protein
     0.0001   21.7   0.1    0.00025   20.4   0.1    1.7  1  Sec_GG           SecD/SecF GG Motif
  ------ inclusion threshold ------
       0.21   11.1  20.7      0.026   14.1   1.2    2.9  3  LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region
       0.23   11.0   0.0       0.42   10.2   0.0    1.4  1  DUF1071          Protein of unknown function (DUF1071)


Domain annotation for each model (and alignments):
>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.2   8.2   1.6e-50   7.3e-47       8     188 ..     123     311 ..     116     312 .. 0.95

  Alignments for each domain:
  == domain 1  score: 159.2 bits;  conditional E-value: 1.6e-50
                 -SSS-EEEEEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHH CS
   SecD_SecF   8 evdkdaekisvetvgpsvskelaekavlallialvliliyvalrFewrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfd 106
                 +++ +  +is + v++ ++++++ +a+l l+i+++l+ +y++lrFewr+a aa+ +l+  +i+t+g++sl+g+ev+++t+++ Lti+G+ ++d vvvfd
  KIR61179.1 123 AFGIQPDQISGNQVSEAWGSQVTSRALLGLVIFVLLVTVYLVLRFEWRMAAAAVSSLFMNLILTAGIYSLVGFEVTPSTIIGFLTILGFALYDVVVVFD 221
                 455577889999*************************************************************************************** PP

                 HHHHH...HHH--SS-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHT.....TTTHHHHHHHHHHTSTTTTTHHHHHHHHHHHHH- CS
   SecD_SecF 107 rvren...lrkkkratlkeiinlslnqtLtrtiltslttllvvvallllgg.....dslkdfalallvGlivgtyssifiasplllllke 188
                 +v+en   ++ ++++t+ e++nl++nq L+r+++ts+++ll+v  ll++g+     ++lkd+ l+l+vG++v  ++si++a+pll+llk+
  KIR61179.1 222 KVQENtrgITANNNQTYGEAANLAINQSLMRSLNTSVVALLPVGGLLFIGAgllgaGTLKDLGLVLFVGMAVAFLTSILLATPLLVLLKN 311
                 *****99999999**********************************9998888889****************************99875 PP

>> Sec_GG  SecD/SecF GG Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   5.5e-08   0.00025       2      25 ..      40      63 ..      39      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 5.5e-08
                HHHHC--EE-TTTS-EEEEEEEE- CS
      Sec_GG  2 slftkGlNLGlDFtGGthielqfd 25
                s++ +G++LG++F+GG  +++ ++
  KIR61179.1 40 SFALRGFTLGIEFAGGNSFQVPAS 63
                6788****************9875 PP

>> LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.6      0.15   6.5e+02     145     163 ..      25      43 ..       5      59 .. 0.63
   2 ?    6.8   5.4   0.00092       4.1     103     159 ..     133     190 ..     115     222 .. 0.73
   3 ?   14.1   1.2   5.8e-06     0.026     104     190 ..     244     332 ..     232     362 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.15
  LPG_synthase_TM 145 vllllalallllavlalll 163
                      +++ +a+al+l+avl ++l
       KIR61179.1  25 LWFGVAGALILVAVLSFAL 43 
                      5555555555555555544 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00092
  LPG_synthase_TM 103 gvslskalasvvv.erlldllalvllgllallllggllaegaavllllalallllavl 159
                      g  +s+a +s+v+ + ll+l+++vll+ + l+l ++++++ aav  l++ ++l+++++
       KIR61179.1 133 GNQVSEAWGSQVTsRALLGLVIFVLLVTVYLVLRFEWRMAAAAVSSLFMNLILTAGIY 190
                      667788888888868899*******************999776333333333333322 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 5.8e-06
  LPG_synthase_TM 104 vslskalasvvverlldllalvllgllallllggllaegaavllllalallllavla..lllllllrrrlarlarvlkrlarllarfar 190
                      ++  ++l   +   ++ ll ++ l++++++llg+  + + +++l++++a+++l +++    ll ll+ ++ r+++  kr+++++ ++ar
       KIR61179.1 244 LAINQSLMRSLNTSVVALLPVGGLLFIGAGLLGAGTLKDLGLVLFVGMAVAFLTSILlaTPLLVLLKNYEPRIQAHNKRVLARRTALAR 332
                      55555666666666777777777777777777777666666555555555555555533445555555555555555555555544444 PP

>> DUF1071  Protein of unknown function (DUF1071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   9.4e-05      0.42      62     120 ..     212     271 ..     188     276 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.4e-05
     DUF1071  62 lvsvevtveeitremllPvldaanksvekataldinksikrClvka.lalfGLGlyiyaG 120
                   +  v v +  +e+   +  ++n++  +a  l+in+s++r l  + +al  +G  ++ G
  KIR61179.1 212 ALYDVVVVFDKVQENTRGITANNNQTYGEAANLAINQSLMRSLNTSvVALLPVGGLLFIG 271
                 555556666777777888889999*******************76526888888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1004  (0.0559987); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 2516.38
//
Query:       KIR61180.1  [L=188]
Description: adenine phosphoribosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-15   56.2   0.4    3.7e-15   55.8   0.4    1.2  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.016   14.6   0.0    1.3  1  UPRTase       Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.4   4.1e-19   3.7e-15      28     124 ..      65     166 ..      45     178 .. 0.89

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 4.1e-19
                   GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE...............EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSE CS
  Pribosyltran  28 gkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdes.......rlledpagkkVliVDDildtGgTllaalelLkekgpee 117
                      d+vvgi+ +G+++a ++a + +v ++ vrk  + p ++ +a+  +  e        +  + +ag++Vl+VDD+l+tGgT +a+l+l++++g ++
    KIR61180.1  65 DAFDAVVGIEARGFVVAAAIAYAAGVGVVPVRKAGKLPRPAYSASYAL--EYgeatlevHEDAFTAGHRVLVVDDVLATGGTAEATLDLVERAGGTV 159
                   4789*************************************9998544..335799**99************************************* PP

                   EEEEEEE CS
  Pribosyltran 118 vriavlv 124
                    ++ vl+
    KIR61180.1 160 AGFTVLL 166
                   9999997 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.8e-06     0.016     120     151 ..     128     159 ..      94     178 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-06
     UPRTase 120 aertvlllDpviaTGgsaaaaiqlLkergvge 151
                 a ++vl++D v+aTGg+a a ++l+ ++g ++
  KIR61180.1 128 AGHRVLVVDDVLATGGTAEATLDLVERAGGTV 159
                 4567*******************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1317.47
//
Query:       KIR61181.1  [L=831]
Description: GTP pyrophosphokinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-46  157.3   0.2    2.5e-46  157.3   0.2    2.1  2  HD_4             HD domain
      2e-38  131.2   0.0    3.7e-38  130.4   0.0    1.5  1  RelA_SpoT        Region found in RelA / SpoT proteins
    6.2e-24   83.8   0.0    2.1e-23   82.1   0.0    2.0  1  TGS              TGS domain
    2.9e-16   59.8   0.1    7.7e-16   58.5   0.1    1.8  1  ACT_4            ACT domain
    7.8e-13   48.0   0.4    1.9e-12   46.7   0.4    1.7  1  ACT              ACT domain
    7.3e-11   42.3   1.4    2.2e-10   40.8   0.3    2.4  3  HD               HD domain
     0.0048   16.8   0.0      0.035   14.0   0.1    2.4  2  DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau do
     0.0094   16.6   0.0      0.074   13.7   0.0    2.7  2  ThiS             ThiS family
  ------ inclusion threshold ------
       0.17   11.8   0.1       0.91    9.4   0.0    2.3  2  Ub-Mut7C         Mut7-C ubiquitin


Domain annotation for each model (and alignments):
>> HD_4  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.3   0.2   1.2e-49   2.5e-46       1     155 [.     130     277 ..     130     278 .. 0.98
   2 ?   -2.3   0.4       1.7   3.3e+03      18      79 ..     730     790 ..     723     803 .. 0.71

  Alignments for each domain:
  == domain 1  score: 157.3 bits;  conditional E-value: 1.2e-49
        HD_4   1 AlelaaelhagqrkltgepllahalevAailaelgldaetviAalLhdvveda.lsleeirerfGeevarLvegvsklkrlqkvaaadeaeekaeqven 98 
                 A++ a ++h+gq +++g p+++h+l+vA+ila+lg+d  t++AalLhd++ed+  +l++++++fG+ev+ Lv+gv+kl++++ +        +a+++e+
  KIR61181.1 130 AFDTANRWHSGQYRKSGDPYITHPLAVATILANLGMDTTTLVAALLHDTIEDTeYTLDQMKADFGPEVTLLVDGVTKLDKVKLG--------DAAKAET 220
                 7899************************************************97777***************************........9****** PP

        HD_4  99 lRkmLlAmveDirvvliklAdrlqtlrslaaakeekrrdvaretldiyaplAnrlGi 155
                 +Rkm +Am++D+rv++iklAdrl+++r+l+  + +kr+++a+etl+i aplA+rlG+
  KIR61181.1 221 IRKMVVAMAKDPRVLVIKLADRLHNMRTLSFLPAPKREQKAKETLEILAPLAHRLGM 277
                 *****************************999************************7 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
        HD_4  18 epllahalevAailaelgldaetviAalLhdvvedalsleeirerfGeevarLvegvsklkr 79 
                 e+l a+a  v+++ ++l ++a t + a+ +++++  + l+++++ + +e +++  ++   +r
  KIR61181.1 730 EDLRAQAERVVEVSWKL-TSASTFLVAIQVEALDRHKLLADVTRVLSDERVNILSATVTTTR 790
                 56667777888888888.67778888888888876556677777777777777666655555 PP

>> RelA_SpoT  Region found in RelA / SpoT proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.0   1.9e-41   3.7e-38       1     116 [.     337     447 ..     337     448 .. 0.98

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 1.9e-41
                 EEE--HHHHHHHHHHCT--CCCCCCCSSTSEEEEEEESSHHHHHHHHHHHHT-SSSEEEEEEETSTSHCTTCCSEEEEEEEETTEEEEEEEEEEEEEHH CS
   RelA_SpoT   1 gRvKslysiieKlerkgikveekfeeitDligiRvivefkddvyevlelikklwdvkpkrfkdyiaepkengYrslHtvvssekgeekvlvEiQiRtia 99 
                 gR+K+lysi++K++ +g +   +f++i+Dl+g+R++v++++d+y++l++i+++w+++p+rfkdyia pk n+Y+slHt+v    g+++++vE+QiRt a
  KIR61181.1 337 GRPKHLYSIYQKMIVRG-R---DFNDIYDLVGVRILVDTVRDCYAALGVIHANWQPVPGRFKDYIAMPKFNMYQSLHTTV---IGPTGKPVEMQIRTYA 428
                 6****************.7...9*********************************************************...**************** PP

                 HHHHHH..HHHHHHHHCTT CS
   RelA_SpoT 100 mdawae..iehhlrYkeke 116
                 m+++ae  i++h++Yke++
  KIR61181.1 429 MHRTAEfgIAAHWKYKEHK 447
                 ****************975 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0     1e-26   2.1e-23       1      60 []     493     552 ..     493     552 .. 0.99

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 1e-26
                 EEEEETTSSEEEEETTB-HHHHHHHHSTTHHHHEEEEEECSEEEETTSBB-SSEEEEEEE CS
         TGS   1 irvytPdGkvpdlprgatveDfAykIhrslakkfiyAlVnGqrvgldhvLedgdvveIvt 60 
                 ++v+tP+G+v+ lp+g+t++DfAy++h+++++k+i+A+VnG++v+l+ +L +gdv+eI+t
  KIR61181.1 493 VYVFTPKGDVIPLPTGSTPVDFAYAVHTEVGHKCIGARVNGKLVPLESTLSNGDVIEIFT 552
                 79********************************************************97 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.1   3.9e-19   7.7e-16       3      80 .]     750     826 ..     748     826 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 3.9e-19
       ACT_4   3 esytvrleveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdvehLsrviakLraipgVisVeR 80 
                 +++ v ++vea dr++lLad+t+v+s+e++ni s +++t++ d +a  ++++e  d +hL +++a++r+++gV +++R
  KIR61181.1 750 STFLVAIQVEALDRHKLLADVTRVLSDERVNILSATVTTTR-DRVAVSRFSFEMADPKHLGHLLAAVRKVDGVFDAYR 826
                 6899***********************************97.99*******************************999 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.4   9.8e-16   1.9e-12       3      66 ..     756     819 ..     754     820 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 9.8e-16
                 EEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT   3 lrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkle 66 
                 + v++ Dr+ lLa+v+++l+d  +Ni s+++++++d+va   f+++ +d+++l ++l+a++k+ 
  KIR61181.1 756 IQVEALDRHKLLADVTRVLSDERVNILSATVTTTRDRVAVSRFSFEMADPKHLGHLLAAVRKVD 819
                 889**********************************************************986 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       8.3   1.6e+04      79      93 ..     106     120 ..      92     128 .. 0.73
   2 !   40.8   0.3   1.1e-13   2.2e-10       1     122 []     149     246 ..     149     246 .. 0.77
   3 ?   -1.6   0.0       1.5   3.1e+03      77      93 ..     294     312 ..     259     332 .. 0.71

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 8.3
                 HHHHHHHHTTCCHHH CS
          HD  79 edvaklirehheswe 93 
                 e +  li++h+e ++
  KIR61181.1 106 EVLEPLISSHRENHP 120
                 566778999999888 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 1.1e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH CS
          HD   1 rleHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgldledvaklirehheswegkkrpr 99 
                 +++H+l+Va +++ l++d         +l+aaLlHD+++++++   ++ +++f++++   ++g+++l +v++ +         ++++ + +++      
  KIR61181.1 149 YITHPLAVATILANLGMDTT-------TLVAALLHDTIEDTEYT-LDQMKADFGPEVTLLVDGVTKLDKVKLGD---------AAKAETIRKM------ 224
                 689*****************.......**************774.33335558888888888888888885555.........4444544444...... PP

                 HHHCCTSCHHHHHHHHHHHHHHH CS
          HD 100 glaerqlslearivklaDrlaam 122
                    +++++++++++klaDrl++m
  KIR61181.1 225 -VVAMAKDPRVLVIKLADRLHNM 246
                 .445566667***********98 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.5
                 H..HHHHHHHHHTTCCHHH CS
          HD  77 d..ledvaklirehheswe 93 
                 +   e++++li eh+ + e
  KIR61181.1 294 PkrYEEILRLIGEHQPQRE 312
                 0345778888888876655 PP

>> DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.8e-05     0.035      23      96 ..     208     280 ..     204     284 .. 0.86
   2 ?   -2.0   0.0       1.5   3.1e+03      42      64 ..     678     700 ..     667     703 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
  DNA_pol3_gamma3  23 eallegdaaaalaelreqyaaGadpvvvlrdLlellhqltllkvlpeaaedlslpeeererlkelaeklsleqL 96 
                      +++  gdaa+a +  + ++a   dp+v++ +L++ lh++  l++lp+ +++ + ++e+ e l+ la++l ++++
       KIR61181.1 208 DKVKLGDAAKAETIRKMVVAMAKDPRVLVIKLADRLHNMRTLSFLPAPKRE-QKAKETLEILAPLAHRLGMNTI 280
                      56667888888888888888889***********************76665.4799999**********99987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.5
  DNA_pol3_gamma3  42 aaGadpvvvlrdLlellhqltll 64 
                      ++ adp vv+r+  +++ +l+++
       KIR61181.1 678 QSSADPGVVVRGVSDVWIKLARC 700
                      5679************9999987 PP

>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         9   1.8e+04      22      39 ..     370     387 ..     369     393 .. 0.80
   2 !   13.7   0.0   3.7e-05     0.074      41      72 ..     524     552 ..     468     553 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 9
                 SBHHHHHHHHHHHTCHHG CS
        ThiS  22 stvaelleaLgerypela 39 
                 +tv++  +aLg  + +++
  KIR61181.1 370 DTVRDCYAALGVIHANWQ 387
                 6999****9998887665 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3.7e-05
                 TTTEEEEETTEEEGCCTTTSB--TTCEEEEEE CS
        ThiS  41 errvavavNgeivprlwldtelkdgDevailp 72 
                 ++ + + vNg++vp    +  l++gD+++i++
  KIR61181.1 524 HKCIGARVNGKLVPL---ESTLSNGDVIEIFT 552
                 5778889********...************97 PP

>> Ub-Mut7C  Mut7-C ubiquitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.9   5.7e+03      14      37 ..     250     273 ..     247     275 .. 0.80
   2 ?    9.4   0.0   0.00046      0.91      46      76 ..     519     553 ..     518     557 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.9
    Ub-Mut7C  14 dflprarreralavafdeaatvkh 37 
                  flp  +re++++   +  a + h
  KIR61181.1 250 SFLPAPKREQKAKETLEILAPLAH 273
                 5999999*9999988877776666 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00046
    Ub-Mut7C  46 htEVel....ilvnGesvgfshiledGdrvavypv 76 
                 htEV+      +vnG+ v+++  l++Gd +++ + 
  KIR61181.1 519 HTEVGHkcigARVNGKLVPLESTLSNGDVIEIFTS 553
                 777775333348*******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (831 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.48
# Mc/sec: 5157.65
//
Query:       KIR61182.1  [L=279]
Description: peptidylprolyl isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-28  100.6   0.0    1.7e-28   99.9   0.0    1.3  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso
  ------ inclusion threshold ------
       0.14   12.4   1.1       0.26   11.6   1.1    1.4  1  DUF3040        Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.0   1.9e-32   1.7e-28       2     157 ..     108     273 ..     107     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 1.9e-32
  Pro_isomerase   2 vdietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikg..fmvqgGdptgktsageqe.kkggesiraipdEits...klkhkrGal 91 
                    ++++t+ +G+i+++++   aP t++ F +l+++gf d+t+ hR++ +   ++q Gdp+++++  +++  +gg   +++++E+ +   +    +G++
     KIR61182.1 108 LTFDTN-LGPITAKVDRSAAPCTAASFTHLASKGFLDNTKCHRLVTEgiKVLQCGDPSATGKGWRDTdGTGGP-SYRMAEENLPtdkRPPYPEGVI 201
                    6899*7.************************************87776789********98833333244444.4566677753233555689*** PP

  Pro_isomerase  92 amartgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiek.......vetde....erpkknvkivsae 157
                    ama++g +p s gsqFfI+ ++ p ld +ytv G+++ Gmd+v+  +k       +   +      pkk+v+i++++
     KIR61182.1 202 AMANSG-QPGSTGSQFFIVYGDSP-LDANYTVLGTITGGMDIVKDVAKagddgayA---KqaggGHPKKEVVIKKMT 273
                    *****8.6*************766.9**********************66665543...044589999999999986 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.1   2.9e-05      0.26      23      67 ..      14      55 ..       6      60 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.9e-05
     DUF3040 23 PklaaalrggaararrrslrrlavlavllfvaGllllvlG.vaaaa 67
                 +l +++ ++aar    +++r+ ++a++++ a+lll+v+G v++aa
  KIR61182.1 14 ARLEREMAERAAR----ARKRRQTQAIVGAGAALLLVVAGtVWLAA 55
                5566666333333....33344899999999*********888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2137.20
//
Query:       KIR61183.1  [L=291]
Description: peptidylprolyl isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-19   69.6   0.0    4.6e-19   69.2   0.0    1.1  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso
  ------ inclusion threshold ------
       0.22   11.8   1.1        0.4   11.0   1.1    1.4  1  DUF3040        Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   5.1e-23   4.6e-19       3     157 ..     104     269 ..     102     270 .. 0.82

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 5.1e-23
  Pro_isomerase   3 dietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgktsageqekkggesiraipdEits...............k 83 
                    +++t++  +i++eL+  +aP + + + +l+++gfYd+t+ h +  +  +  Gdp+g++  g++        + + dE+ +                
     KIR61183.1 104 TVTTNQGAPITAELDLASAPCAGASIAHLASKGFYDNTKCHEITSEGALRCGDPSGTGLGGPT--------YSFYDENVPvapeaspsaspapdqP 191
                    688974559***********************************************9773332........2333444333444445677777743 PP

  Pro_isomerase  84 lkhkrGalamartgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetde......erpkknvkivsae 157
                        +G++am  + + p  +gsqF I++k+ +     y v GkV+ G+dvv ki +++t +       +pk++v+i+s++
     KIR61183.1 192 PAYPKGTVAMVAN-P-PGANGSQFLIFFKDFDPDKPAYPVIGKVTGGLDVVTKIGALPTVDngsgakVKPKTDVVIQSLT 269
                    44599******98.5.9*************999999********************777666778888899999999876 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.1   4.5e-05       0.4      25      64 ..      16      51 ..       8      58 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.5e-05
     DUF3040 25 laaalrggaararrrslrrlavlavllfvaGllllvlGva 64
                l ++l    ar+++r +rr+ ++a +++++ l+l+v+G a
  KIR61183.1 16 LDRQL----ARRAARTRRRRQIQAGVGAAVVLVLIVAGSA 51
                44444....333344445558999999999********43 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 1842.47
//
Query:       KIR61184.1  [L=239]
Description: hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-22   78.4   6.3    4.2e-21   75.9   6.3    2.0  1  Lactamase_B    Metallo-beta-lactamase superfamily
      6e-06   25.9   0.0    8.4e-06   25.4   0.0    1.2  1  Lactamase_B_2  Beta-lactamase superfamily domain
     0.0025   17.7   0.0     0.0045   16.9   0.0    1.5  1  Lactamase_B_3  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   6.3     7e-25   4.2e-21       3     197 .]      10     205 ..       8     205 .. 0.80

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 7e-25
                  CCSSEEEEEE..ETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHT CS
  Lactamase_B   3 pdpvnsylie..gdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglll 98 
                   +++n+y++    ++ ++++D+G++    + a     l    + + av+lTH+HlDH++ ++ ++ a++v  ++++e+ + l +++++ +    gl +
   KIR61184.1  10 AFGTNCYVVAtgPGEQCVVVDPGIGVIDRLDA----VLAEHRLHPAAVLLTHGHLDHTFSVAPVCGARGVTAYVHPEDRELLADPAKGLSMDLRGLFG 103
                  6789******9888*****************8....6**************************************************88888888776 PP

                  TCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEE..ETT.......CCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHHHH CS
  Lactamase_B  99 agvsadkpdvdeeeldgnaggrralyvtggpghghghgvve..ygg.......gkvlftGDallagetgridltlrgaevrdpsdaekyldsllklag 187
                   + +   pd + e +dg +++  +l++t+ +++gh++g+v   ++g       ++v+++GD+l+ag++gr+dl+++  + + +s+ +k l        
   KIR61184.1 104 GRLPYSEPDDVAELTDGATLSLAGLEITVDHAPGHTGGSVLfrLPGagsqweaEQVCLSGDVLFAGSIGRTDLWGGSMPRMLTSLRDKIL-------P 194
                  6666666666666666666666666666666666666666411333222222279******************88888888888888887.......6 PP

                  HCHSEEEE.SS CS
  Lactamase_B 188 lkaevlvp.gH 197
                  l ++++v+ gH
   KIR61184.1 195 LADDTVVLpGH 205
                  66677666688 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.4e-09   8.4e-06       3     115 ..      27     140 ..      26     172 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.4e-09
                    EEES--TTHHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EE.EEEEEEHHHHHHCCTTCGHHHCHTT..........TTEEE CS
  Lactamase_B_2   3 iLiDagpdlrqqalralqPvelrdelppidaVllthaHyDHlaglltlrelrpkk.lplyapkgvlavleanfvylaleee..........pavnv 87 
                    +++D+g ++   +   l    + ++l + +aVllth+H DH+    ++++ ++ + ++ y++++ ++ l++  + l ++             + +v
     KIR61184.1  27 VVVDPGIGVIDRLDAVL----AEHRL-HPAAVLLTHGHLDHT---FSVAPVCGARgVTAYVHPEDRELLADPAKGLSMDLRglfggrlpysEPDDV 114
                    6899****888833333....34454.4567***********...778886666669999999999988888877777777888877777778888 PP

                    EEE-TTSEEEECSTTEEEEEEEE-EE-- CS
  Lactamase_B_2  88 heldwgesfelgdggleitatparhksg 115
                     el+ g +++l+  gleit+  a++ +g
     KIR61184.1 115 AELTDGATLSLA--GLEITVDHAPGHTG 140
                    888888888888..67888777766655 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   7.6e-07    0.0045       5      50 ..      11      63 ..       9     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7.6e-07
  Lactamase_B_3  5 lghnsflleta.g.arilvDPf.....kanlgyeppaeeaDlvlisqaledHa 50
                   +g n++++ t+ g + ++vDP+     +  + +++ + ++ +vl+++++ dH 
     KIR61184.1 11 FGTNCYVVATGpGeQCVVVDPGigvidRLDAVLAEHRLHPAAVLLTHGHLDHT 63
                   699******9556699******888753267778888***************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1846.11
//
Query:       KIR61185.1  [L=442]
Description: histidyl-tRNA synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-26   91.4   0.0    7.3e-26   91.1   0.0    1.1  1  tRNA-synt_His   Histidyl-tRNA synthetase
    2.3e-06   27.6   0.0    4.7e-06   26.7   0.0    1.5  1  HGTP_anticodon  Anticodon binding domain
    0.00016   21.7   0.0    0.00042   20.3   0.0    1.8  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P


Domain annotation for each model (and alignments):
>> tRNA-synt_His  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.0   1.2e-29   7.3e-26       4     310 .]      12     331 ..       9     331 .. 0.83

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 1.2e-29
                    -EETCHHHHHHHHHHHHHHHHHHTT-EEEE--SEEEHHHHCTTSTCCHH..HS-EE...E-.T.TSSEEEE-SSSHHHHHHHHHHHHH.TSS-EEE CS
  tRNA-synt_His   4 dllpeeaekieelrrrlldlfeswGYelVspPllEyldslltgagedld..qtfkl...vD.q.sgrllglRaDiTpqvaRiaahrln.rerplRl 91 
                    +  p++   ++ +  r+  +fe +G+ +  + ++E ld ll++++ + +   + +l    D    +++lgl  D+T+  aR++ ++    + p R 
     KIR61185.1  12 EWTPAQRMIEQFVLDRIRATFELYGFAPLETRSVEPLDQLLRKGETSKEvyVLRRLqadADgPaGDDALGLHFDLTVPFARYVLENAGkLQFPFRR 107
                    56667777777788999*************************9977766652334442457546789*****************99977******* PP

                    EEEEEEEESS-SSTT--CCEEEEEEEEESS-SHHH..HHHHHHHHHHHHHHHCTSSSEEEEEEETCHHHHHHHHTT--HHH.HHHHHHHHHCT-HH CS
  tRNA-synt_His  92 cYaGsvlrtrpdglgrsreplQvGaEliGaeglea..dlEvlslllealeaaagvkelrldlghvglvralleaaglsesl.eeallaalarkdla 184
                    + + +v+r ++ ++gr re+lQ+ + +++ ++l a  ++E+  ++ +al +++ ++ +++++++ ++ +   + +gl++ + + + ++ l++   a
     KIR61185.1 108 YQIQKVWRGERPQEGRYREFLQADIDIVDRDTLPAhyEAEMPLVIGDAL-RSLPIPPVTIQVNNRKICEGFYRGIGLTDPEaALRAVDKLDKIGPA 202
                    *******************************99886688999999****.6*************************98742022344456666667 PP

                    HHHHHHHC.CTTHHHCCHCC....HCCHCCCHHHHCHCCHCT.HHHHHHHHHHHHHHHHHHHHHHHH-TTEEE-TT--TTTTT--SEEEEEEETT- CS
  tRNA-synt_His 185 elkelaae.aglkealrellkal.elygdaevleealealaa.apalqaaldeleelaallealakpevrvtlDlaelrgyeYytGlvFaayaegv 277
                    +++el+ae ag++e++++++ al e++ ++ + ++a + l    p l + ++el +++++++a   +   +  Dl   rg++YytG+v++    g+
     KIR61185.1 203 KVAELLAEtAGASESQAKACLALaEISAPDASFADAVRGLGVtHPLLDEGVAELVAVVETAAAH--SPGLCVADLRIARGLDYYTGTVYETSLAGY 296
                    88888876266899999**999************999988541455666666666666666654..3355667*********************** PP

                    SS..-SEEEEEECTTTGGGT---EEEEEEEEHHHH CS
  tRNA-synt_His 278 gq..aiarGGrYdelgaafgrarpAtGfsldleal 310
                    ++   i +GGrYd+l++a g++ p++G s+ + +l
     KIR61185.1 297 ERfgSICSGGRYDNLVSAGGASFPGVGISIGVSRL 331
                    *777**************************99876 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   7.9e-10   4.7e-06       3      64 ..     351     410 ..     349     427 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 7.9e-10
                     EEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHH CS
  HGTP_anticodon   3 vviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekel 64 
                     v++++++  ee     + +a++Lr+ g+ +e+  s+ ++gk+ir+a++ gip++ + G++ +
      KIR61185.1 351 VLVAVTS--EERRAASNAVADALRRRGVPTEVAPSAAKFGKQIRHAERRGIPYVWFPGADGA 410
                     5555555..46789999************************************988887765 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     7e-08   0.00042      33      72 ..     101     137 ..      76     337 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7e-08
                   GGSSEEEEEEEEEEBTTTSTBCTTTB-SEEEEEEEEEEES CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  33 krLPlklyqiqtkyRdEksdsrGLlRvreFhqkdgyvfha 72 
                    + P++ yqiq ++R E++ + G  R+reF q d  ++  
    KIR61185.1 101 LQFPFRRYQIQKVWRGERP-QEG--RYREFLQADIDIVDR 137
                   348****************.***..*********887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3170.05
//
Query:       KIR61186.1  [L=311]
Description: acyl-ACP desaturase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-79  267.6   0.0    1.4e-79  267.4   0.0    1.0  1  FA_desaturase_2  Fatty acid desaturase


Domain annotation for each model (and alignments):
>> FA_desaturase_2  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.4   0.0   7.6e-84   1.4e-79       3     315 ..       7     304 ..       5     310 .. 0.96

  Alignments for each domain:
  == domain 1  score: 267.4 bits;  conditional E-value: 7.6e-84
  FA_desaturase_2   3 levlkslekvveenllellkPvekaWqpsdflPdseseefa..eevkelrerakelpddllvvlvgdmvTEeaLPtYesllntlegvrdetgas 94 
                      + +l +le+vv++nl+++l+ ++k+W+p++++P+se ++f      +++  + +++p+ ++ +l+ +++TE++LP+Y++ ++tl g        
       KIR61186.1   7 TALLVELEPVVAKNLDRHLS-MAKEWFPHEYVPWSEGRTFDgpLGGQAWSPQDSTIPEIARTALIVNLLTEDNLPSYHHQIATLFG-------P 92 
                      568899**************.*****************976225789***************************************.......8 PP

  FA_desaturase_2  95 dtawakWvraWtaEEnrHgdlLnkYlylsgrvdmrevektvqelikaGfdiktekdpykgfvYtsfQErATkvsHrntaklakeagdellakic 188
                      d aw++Wv +WtaEE rHg+++++Yl ++++vd  ++e++++ +++aG   + ++++ +++ Y+sfQE+AT++sHrnt+++   agd++ + ++
       KIR61186.1  93 DGAWGTWVGRWTAEEGRHGTAIRDYLTVTRAVDPVALERARMVHMTAGYTNSHDDSMLRSLAYVSFQELATRISHRNTGRV---AGDPVCEALL 183
                      99*******************************************************************************...699******* PP

  FA_desaturase_2 189 gaiaadEkrHeaaYtrvvekllevdpdeavlaladmmrkkitmPaallrdgkdeelFeefsavaqrlgvYtardyld.ileelikkWkieeleg 281
                      +++aadE+ H+++Y+++++++lev+p++a++a+a+++ + ++mP+  +      e F++ s +++ +g+Y+ r++ d ++  ++++W+i +++g
       KIR61186.1 184 ARVAADENLHMVFYRNLLAAALEVAPSQAMRAIAEVLAD-FQMPGVGI------EGFARKSVAIALAGIYDLRQHRDeVVVPVLRQWDIFNVTG 270
                      **************************************9.********......99********************99**************** PP

  FA_desaturase_2 282 lsgegrrardyvcalperlrrvaeraeerakkke 315
                      l+ +g+ ard+++a+ + l+  a r+ee+++ ++
       KIR61186.1 271 LNADGEAARDQIAAHLDTLQVHASRFEEKRDARA 304
                      **************************98876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2377.51
//
Query:       KIR61187.1  [L=349]
Description: serine protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-14   53.7   5.8    1.5e-14   53.7   5.8    3.4  3  Pro_Al_protease  Alpha-lytic protease prodomain
  ------ inclusion threshold ------
        1.4    8.9   5.2        1.1    9.3   2.5    2.0  2  Pico_P2A         Picornavirus core protein 2A


Domain annotation for each model (and alignments):
>> Pro_Al_protease  Alpha-lytic protease prodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.4      0.28   2.5e+03      32      49 ..      16      33 ..      11      42 .. 0.71
   2 ?    0.1   6.4     0.099   8.8e+02       9      57 ..      40      81 ..      35      83 .. 0.69
   3 !   53.7   5.8   1.7e-18   1.5e-14       1      58 [.      88     143 ..      88     144 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.28
  Pro_Al_protease 32 atNkVVVtadsgvtaaae 49
                     a+ ++V ta+ g++a+a+
       KIR61187.1 16 AAGTLVATALIGAPAQAA 33
                     456777777777777754 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.099
  Pro_Al_protease  9 akaaLdraaaraaaavtaWyVDvatNkVVVtadsgvtaaaealaaaAgv 57
                     a+a+L ++ +++    ++ y D a+ + VVt++  + aaa++ ++a+g+
       KIR61187.1 40 AAATLAERLGDR---SAGTYAD-ASGRMVVTVT--D-AAAARQVRASGA 81
                     566666666666...3555666.7999******..4.445667777776 PP

  == domain 3  score: 53.7 bits;  conditional E-value: 1.7e-18
  Pro_Al_protease   1 hSlaeLdaakaaLdraaaraaaavtaWyVDvatNkVVVtadsgvtaa.aealaaaAgvd 58 
                      +++aeLd+a+a+L  + a++  ++taW+ D+ tN+VVV++ds+vt+a  e+ +aaA+++
       KIR61187.1  88 RGAAELDRATAELE-RSAKI--PGTAWWTDPVTNQVVVSVDSTVTGAkLERVKAAAART 143
                      679**********9.9999*..**********************************876 PP

>> Pico_P2A  Picornavirus core protein 2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.16   1.4e+03      68      97 ..     199     229 ..     155     236 .. 0.71
   2 ?    9.3   2.5   0.00012       1.1      71     113 ..     284     325 ..     269     331 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.16
    Pico_P2A  68 eseyyparlqshvl.lgvGfaePGdCGGilr 97 
                 +s +y +  q++vl   +G++ PG+  Gi+r
  KIR61187.1 199 ASTWYSNSGQTSVLgTRAGTSFPGNDYGIVR 229
                 4556666666666524578888888777776 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00012
    Pico_P2A  71 yyparlqshvllgvGfaePGdCGGilrCehGviGivtaGGegl 113
                  y +   s ++ +   aePGd GG l      iG+ t GG+g 
  KIR61187.1 284 NYAEGSVSGLIRTNVCAEPGDSGGSLFSGTSAIGL-TSGGSGN 325
                 55566666777788899*****************7.7788875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2383.19
//
Query:       KIR61188.1  [L=532]
Description: major facilitator transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.1e-160  535.5  33.3   1.3e-160  535.3  33.3    1.0  1  MFS_3       Transmembrane secretion effector
    2.1e-27   96.0  53.1    1.3e-25   90.1  38.3    2.1  2  MFS_1       Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.096   12.8   0.1       0.18   11.9   0.1    1.5  1  ABM         Antibiotic biosynthesis monooxygenase


Domain annotation for each model (and alignments):
>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  535.3  33.3  2.2e-164  1.3e-160       1     512 [.      11     523 ..      11     530 .. 0.99

  Alignments for each domain:
  == domain 1  score: 535.3 bits;  conditional E-value: 2.2e-164
       MFS_3   1 asafaPlrqkvFrviWiaslvsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalg 99 
                 asa+aPlr  vFr++W+a l+sn+Gt++q+v+a Wl+ d   +p+ vAlvq a+ LP++ll+++aGalaD++drR++l+ vq++la+v vllt l+a +
  KIR61188.1  11 ASAWAPLRLAVFRSLWLAVLASNVGTWMQTVGAQWLLVDQPNAPTLVALVQTASMLPVLLLALPAGALADTLDRRRLLIGVQCFLAAVGVLLTALTAAD 109
                 599************************************************************************************************ PP

       MFS_3 100 llspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsylalivallrwkrevrkssl 198
                  + p lll lt+ +g+G+al+ PaWqA+++elv+r+++ +A aL s+ +n+aRsvGPA++Gvlva +G a++favn+ s+ +   allrw+++ +  + 
  KIR61188.1 110 RMPPALLLNLTFALGVGQALTLPAWQAVIPELVPREQLVNASALGSISVNLARSVGPAVAGVLVAQAGVAVVFAVNTASFAIFAGALLRWRPDRPDGPA 208
                 *************************************************************************************************** PP

       MFS_3 199 prEkllealraglRftaasreikavlvRaalFglsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlv 297
                   E++++alrag R+++ s+ ++ +l+RaalF +  sa +aLLPlva ++l+ ++  yG+ll+alGvGA++gal+l+r+R+ l++++l+l+a +++   
  KIR61188.1 209 MPERFTAALRAGGRYVRHSPVVRRILLRAALFVVPGSALWALLPLVASQRLGLGPGGYGVLLAALGVGAVAGALVLPRVRRALTASQLLLVAGLVYGGA 307
                 *************************************************************************************************** PP

       MFS_3 298 llslalasslwvavlvlllgGaaWitalstlnvavqlavPrWvvgRalavYltvlaGglaaGsllWGavaealsvtlaLlaaaaalllaaaillllklp 396
                 ll+lal++  ++++ +l+ +G aW+t+lst+n+a+ql +P Wv++R+l+vY++v+aGg a+G+l+WGa++e +++ +aL +a+aa+ +aa+++ l +l+
  KIR61188.1 308 LLVLALVPVPALVTAALVPAGLAWMTVLSTVNAAMQLFLPGWVRARGLSVYQMVFAGGQALGALAWGALGELAGLVTALAVAGAAMAVAALTVPLWPLR 406
                 *************************************************************************************************** PP

       MFS_3 397 eleasdlapsnrfeeplvaldlkprrGpvlvkieYkieeedieaFlkalaelrrvrrrdGArkWtlvrdlenpevwvEtflvetWleylRln.kRltka 494
                 +++  d +p   ++ep++ ld +pr Gpvlv++ Y+++ e+++aF++a++++ r rrr GA +W+l+r  e  + +vE+++v++W e+lR++  Rlt a
  KIR61188.1 407 DTRGVDRDPAVYWPEPHLMLDAHPRTGPVLVTVSYTVPPERQDAFVEAMRAVGRSRRRTGAMRWGLFRAGERAHGFVEVYQVPSWEEHLRQHgGRLTGA 505
                 ******************************************************************************************9946***** PP

       MFS_3 495 dkeveekvralhsgeepp 512
                 d++ ee++ral +g+ ++
  KIR61188.1 506 DRAAEERARALTEGDVHV 523
                 *************98754 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1  38.3   2.2e-29   1.3e-25       1     330 [.      25     347 ..      25     349 .. 0.87
   2 !   10.9   8.3   2.5e-05      0.15     115     174 ..     347     406 ..     344     423 .. 0.87

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 2.2e-29
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfa...sslw.lllvlrvl 94 
                 l+la++ s  + ++ ++ + ++l ++ + +p+ + l+ t+ +l  ++++lp+G+l+d + rrr ++ +  +l a+g+ll +++      + lll l + 
  KIR61188.1  25 LWLAVLASNVGTWMQTVGAQWLLVDQPN-APTLVALVQTASMLPVLLLALPAGALADTLDRRRlLIGVQCFLAAVGVLLTALTaadRMPPaLLLNLTFA 122
                 6888999999999999999988889988.**********************************66666666666665555553355224457999**** PP

       MFS_1  95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgp 193
                  G+g+++ +pa +a+i +++p+e+   a +l s++++l+  +gp+++g+l++++g  +vf ++++ ++++   ++ll ++++++ ++  p++       
  KIR61188.1 123 LGVGQALTLPAWQAVIPELVPREQLVNASALGSISVNLARSVGPAVAGVLVAQAGVAVVFAVNTASFAIF--AGALLRWRPDRPDGPAMPERF-----T 214
                 *********************************************************************9..667999999999888877655.....6 PP

       MFS_1 194 aplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdrlgrrrrlllallllllaa 288
                 a+l+ + ++++++pv+  +l+ ++lf +  s+l +llpl + ++lgl+    g+lla+  l+++a++g   al++ r+ + l +   ll+a+l+   a+
  KIR61188.1 215 AALRAGGRYVRHSPVVRRILLRAALFVVPGSALWALLPLVASQRLGLGpggyGVLLAA--LGVGAVAG---ALVLPRVRRALTASQLLLVAGLVYGGAL 308
                 6777779*******998677777777679999****************9988777777..88888888...999999998899999************* PP

       MFS_1 289 lglallavtssavllllvlvliGfglgfvfpsllalasdlap 330
                 l lal++v+   +l+ ++lv +G+++ +v ++++a+++ ++p
  KIR61188.1 309 LVLALVPVP---ALVTAALVPAGLAWMTVLSTVNAAMQLFLP 347
                 *********...888889999****************98876 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 2.5e-05
       MFS_1 115 pkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpe 174
                 p+  r+r+++++++ f+ G +lg+l+ g+l +++g   +  ++++++++a++ + l+ ++
  KIR61188.1 347 PGWVRARGLSVYQMVFAGGQALGALAWGALGELAGLVTALAVAGAAMAVAALTVPLWPLR 406
                 56679*********************************************9966666544 PP

>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     3e-05      0.18       2      44 ..     435     475 ..     434     500 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3e-05
                 EEEEEEEEESTTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEE CS
         ABM   2 viviaeirvkpgqaeafldafaeavesllaeepGclgyellrs 44 
                 v v++ ++v+p++++af++a +++ + + ++  G ++  l+r 
  KIR61188.1 435 VLVTVSYTVPPERQDAFVEAMRAVGR-S-RRRTGAMRWGLFRA 475
                 7899******************9888.8.47777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3757.06
//
Query:       KIR61189.1  [L=210]
Description: hypothetical protein TK50_25960 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-23   82.2  39.9    7.3e-23   81.1  39.9    1.5  1  DUF998    Protein of unknown function (DUF998)


Domain annotation for each model (and alignments):
>> DUF998  Protein of unknown function (DUF998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1  39.9   4.1e-27   7.3e-23       3     184 ..      14     205 ..      12     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 4.1e-27
      DUF998   3 aallalav.ilaaallrpgy.dplrhaiSeLgaeggpggwlfnaglvllgllvlalavgllraargragragrlllavaglglvlagvfptdpgggsps 99 
                 aa+++l++ +l++a+ +pg  d ++ +iS L+a g++++w+++ glv lgl+ +++a+gl     ++++  gr+lla++g++++++++fp++  ggs+ 
  KIR61189.1  14 AAPVFLVGgWLLGAARQPGGfDQVSGTISALAAVGAADRWIMTLGLVGLGLCHCVTAAGL-----RPLAVGGRALLALGGVATLAVAAFPLPADGGSA- 106
                 667777777*99999999988*************************************66.....99******************************9. PP

      DUF998 100 lsglvHglasavaflalavavl..........lla........saarrrawallrlvggvallllvaalvwllaa.aldgslllGlaerllvlaitawl 179
                     +H+la+avaf alav+++          + +           +++a+    +++++al++++++ v+++a    +g+ ++Glaer+++ a+++ +
  KIR61189.1 107 ----PHALAAAVAFGALAVWPAfapagtggprA-GrprgdalrPGGGHPAHHTHGRAAWAALAVGLLVPVAWFAIeLATGGERIGLAERVAAGAEALCP 200
                 ....******************66665555540.15555555588899999999999999999999999999888899********************9 PP

      DUF998 180 lalal 184
                 +++a 
  KIR61189.1 201 ALVAG 205
                 99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1616.12
//
Query:       KIR61190.1  [L=601]
Description: aspartyl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.3e-100  334.5   0.0   6.9e-100  334.2   0.0    1.1  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    3.9e-16   58.8   0.0      1e-15   57.5   0.1    1.7  2  tRNA_anti-codon  OB-fold nucleic acid binding domain
    3.7e-15   55.9   0.1    7.9e-15   54.9   0.1    1.6  2  GAD              GAD domain
  ------ inclusion threshold ------
      0.033   13.7   0.0        1.6    8.2   0.0    2.4  3  tRNA-synt_2d     tRNA synthetases class II core domain (F)
      0.098   13.3   0.1        0.2   12.2   0.1    1.5  1  EutN_CcmL        Ethanolamine utilisation protein EutN/carbox
       0.21   11.5   0.0       0.34   10.9   0.0    1.2  1  tRNA-synt_2b     tRNA synthetase class II core domain (G, H, 


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.2   0.0  2.3e-103  6.9e-100       3     313 ..     116     552 ..     114     553 .. 0.99

  Alignments for each domain:
  == domain 1  score: 334.2 bits;  conditional E-value: 2.3e-103
                  CHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   3 elrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqiara 100
                  ++rlk+ryldlr+    k +rlrs++ ++ r +l+e++f+eietP+L++s t+egar+F+v++r ++++++aL+qspql+++ll+v+g++r++qiar+
   KIR61190.1 116 DIRLKYRYLDLRRGGPAKAMRLRSRANQLARGVLHERDFLEIETPTLTRS-TPEGARDFLVPVRLQPGSWYALPQSPQLFKQLLMVGGMERYYQIARC 212
                  799***********************************************.*********************************************** PP

                  E--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS-SS--HHHHHHHHH. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  tRNA-synt_2 101 FRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrnskdlkkpfkrltykeaieklneigkdldkaderalvk. 197
                  +R+Ed+r+dr++ EFtq+++emsf++e+d++++ e +++ l++++  +              ++++p++r+t+++a+ +     +++dk+d+r+ v+ 
   KIR61190.1 213 YRDEDFRADRQP-EFTQLDIEMSFVTEDDVIDLGEAIVSALWSDL-AGY-------------EIPRPIPRITWHDAMAR-----YGSDKPDLRYGVEl 290
                  ************.********************************.666.............9****************.....************** PP

                  .................................................................................................. CS
                  .................................................................................................. RF
  tRNA-synt_2 198 .................................................................................................. 197
                                                                                                                    
   KIR61190.1 291 teltdylrgtafrvfagaidaggyvgavvmpggagqtrkeldgwqdwakargakglayvvldaetgaprgpvaknlseehlagladavgakpgdavff 388
                  ************************************************************************************************** PP

                  ............................HS--SEEEEEEEB...........GGGSTTCBBBSTTS........TTBBSEEEEEETTEEEEEEEEB-- CS
                  ............................xxxxxxxxxxxxx...........xxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 198 ............................keknepvfvtdfP...........aelkpFyarkeedd........kkltesyDllingvElvgGslRie 248
                                              ++ + +++v+d P           a ++pF++++ e           +l+ +yD+++ng E++gGs+Ri+
   KIR61190.1 389 aasadareaqellgaarieiakraklidESAWAFCWVVDAPmfektdeggwtAVHHPFTSPNAEWVdrfeeapdRALAYAYDIVCNGNEIGGGSIRIH 486
                  ***************************************************************99899*****99*********************** PP

                  SHHHHHHHHHHCCHH.SSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 249 dpeeleeklkskgld.eeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                  + ++++++++  g++  ea++kf+++lea++yGapphgG+++G+dR++mll+g++sIr+viaFPk+
   KIR61190.1 487 RGDVQQRVFDLLGITpAEAQDKFGFLLEAFKYGAPPHGGIAFGWDRVCMLLAGADSIREVIAFPKT 552
                  ****************************************************************98 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.1   3.4e-19     1e-15       1      76 []      19      97 ..      19      97 .. 0.91
   2 ?   -3.7   0.0       4.1   1.2e+04      13      28 ..     341     356 ..     337     357 .. 0.84

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 3.4e-19
                     EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEECTTS.........SEEEEEEEEEEE CS
  tRNA_anti-codon  1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrrpgg.........elelkveeiell 76
                     Vt+aG+v ++  r++g+vif+dlrD +g +qvv+      + a  l+++ +v+vtG+v+rrp+g          +e++++ +e+l
       KIR61190.1 19 VTLAGWVARR--RDHGGVIFVDLRDASGVVQVVFRE----EDAHALRNEFCVKVTGEVTRRPEGnenpelptgGIEVTASGLEVL 97
                     89********..************************....*********************777777777777899988888875 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.1
                      EEETTEEEEEEEETTE CS
  tRNA_anti-codon  13 rsggkvifidlrDgtg 28 
                      r+ +++++++l+ +tg
       KIR61190.1 341 RGAKGLAYVVLDAETG 356
                      78899999*9999998 PP

>> GAD  GAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       5.4   1.6e+04       7      26 ..     128     147 ..     126     151 .. 0.78
   2 !   54.9   0.1   2.7e-18   7.9e-15       1      89 [.     305     395 ..     305     401 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 5.4
                 STEEEEEEEETTG-TTTSHH CS
         GAD   7 sggsvkalrvpggaaklsrk 26 
                  gg  ka+r++  a++l r 
  KIR61190.1 128 RGGPAKAMRLRSRANQLARG 147
                 57888999999999998885 PP

  == domain 2  score: 54.9 bits;  conditional E-value: 2.7e-18
                 HHHHHHSTEEEEEEEETTG-TTTSHHHHHHHHHHHHHTTHSHCEEEEESS..GGEETTTCCCS-HHHHHHHHHHCT--TTEEEEEEEEE.HH CS
         GAD   1 fsealksggsvkalrvpggaaklsrkeideleefakelgakglawikveg..egltgpiakflteeevkklleavgaeegDillfvAdk.kk 89 
                 f+ a+  gg v a+++pgg a+ +rke+d  ++ ak  gakgla++ ++   +   gp+ak l+ee +  l++avga++gD+++f+A   ++
  KIR61190.1 305 FAGAIDAGGYVGAVVMPGG-AGQTRKELDGWQDWAKARGAKGLAYVVLDAetGAPRGPVAKNLSEEHLAGLADAVGAKPGDAVFFAASAdAR 395
                 7889999***********8.99***********************98877667889******************************987444 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00053       1.6     103     129 ..     205     231 ..     189     263 .. 0.71
   2 ?   -4.0   0.0       2.8   8.5e+03     163     174 ..     441     452 ..     430     454 .. 0.77
   3 ?    2.8   0.0     0.023        69     213     235 ..     527     547 ..     513     550 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00053
                   EEEEEEEEEBSST-SSSB-SEEEEEEE CS
  tRNA-synt_2d 103 kiisigrvfRrdavDathlaeFhqveg 129
                   ++  i r++R ++  a +++eF+q++ 
    KIR61190.1 205 RYYQIARCYRDEDFRADRQPEFTQLDI 231
                   78899*******************763 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2.8
                   ECEETTEEEEEE CS
  tRNA-synt_2d 163 psyfpftePsae 174
                     + pft P+ae
    KIR61190.1 441 AVHHPFTSPNAE 452
                   5678*****998 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.023
                   EEEEEHHHHHHHHHT-SSGHHHH CS
  tRNA-synt_2d 213 afGlGveRlamlkygieDiRelv 235
                   a  +G +R+ ml  g + iRe++
    KIR61190.1 527 A--FGWDRVCMLLAGADSIREVI 547
                   4..578**************975 PP

>> EutN_CcmL  Ethanolamine utilisation protein EutN/carboxysome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   6.9e-05       0.2      44      68 ..     375     399 ..     347     409 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.9e-05
                 EESS---TT-EEEEEEGGGGGGSTT CS
   EutN_CcmL  44 vDtvgAgvGelVlvveGssarkaag 68 
                 +D+vgA++G+ V+++ ++ ar+a++
  KIR61190.1 375 ADAVGAKPGDAVFFAASADAREAQE 399
                 8********************9765 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00011      0.34      38      81 ..     205     246 ..     204     286 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
                   EEEEEEEEEBTTTSTBCTTTB-SEEEEEEEE.EEESGGGHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  tRNA-synt_2b  38 klyqiqtkyRdEksdsrGLlRvreFhqkdgy.vfhaeaslddslr 81 
                   ++yqi ++yRdE        R+ eF+q d + +f++e+++ d  +
    KIR61190.1 205 RYYQIARCYRDEDF-RAD--RQPEFTQLDIEmSFVTEDDVIDLGE 246
                   79**********97.335..999******8736888987777544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4120.68
//
Query:       KIR61191.1  [L=270]
Description: dTDP-4-dehydrorhamnose reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-31  110.1   0.1    6.3e-31  107.5   0.1    1.8  1  RmlD_sub_bind   RmlD substrate binding domain
    7.2e-16   58.4   0.2    1.4e-15   57.4   0.2    1.6  1  Epimerase       NAD dependent epimerase/dehydratase family
    1.7e-07   31.3   5.2      2e-07   31.1   5.2    1.2  1  NAD_binding_10  NAD(P)H-binding
    7.5e-05   22.3   0.1     0.0012   18.3   0.1    2.5  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
  ------ inclusion threshold ------
       0.28   10.7   2.4       0.76    9.3   2.4    1.8  1  NmrA            NmrA-like family
       0.52    9.7   7.7        0.1   12.0   0.9    2.6  3  adh_short       short chain dehydrogenase
       0.58    9.7   6.3        1.2    8.7   0.3    2.7  2  adh_short_C2    Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.1   2.4e-34   6.3e-31       1     271 [.       1     262 [.       1     269 [. 0.92

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 2.4e-34
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...........T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre...........eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaeaveal 85 
                    m++lv+Ga+G lG e+ +++ ++g  v+++  +           +ld+td++av++l+++++p++vv++  y         +  +  v a++++++
     KIR61191.1   1 MTLLVVGASGYLGGEVCRRAVAAGQRVVGTYHAnpgapagvearRLDVTDRAAVRALVAAVRPAAVVSTP-Y---------RYDDWTVTADGAANV 86 
                    89****************************77779********************************975.3.........456789********* PP

                    HHHHHHCT-EEEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHHH-SSEEEEEE-SEESSSSS-HHHHHHHHHHH-SEEEEESS-EE CS
  RmlD_sub_bind  86 AeaaaavgalLihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavlaagkkalivRtswvygekgknfvktmlrlakereelkvvaDqlg 181
                    A aaa++ga L+h+S+D    G+ ++pY+ dd + P+ +YG++K+a E av+a  + a++vRts + g+++   v+  l  ++ r  l  + D l+
     KIR61191.1  87 AYAAAEAGARLVHLSSDALHAGR-PEPYADDDVPTPVFAYGAAKAAAETAVRAVDPGAALVRTSLIVGDERSKQVRLCLAALAGRGAL--FTDELR 179
                    **********************9.99*********************************************99999988888888876..79**** PP

                    --EEHHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHCHTTSEEEEE-CCCS--SS---SBE-B--HHHHHCCT--- CS
  RmlD_sub_bind 182 sPTsardlAevllqllekaaeekelagvyHlanegetswlefArailkeagadseevkpistaeyptpAkRPanSvLdtekleatfgikl 271
                    +P  + dlA+++l+l++   +     g + +a+ +++s++e++  +++++g d+  ++  ++  ++    RP + +Ld+++++    ++l
     KIR61191.1 180 CPVDVGDLAAAVLELAASDYA-----GPLNVAGPDAVSRAELGLLVARRFGLDPGGLRTATS--AASGLARPVEVRLDSSRAAGLLRTRL 262
                    ****************99996.....****************************99998755..56778999999999998877666655 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.2   5.4e-19   1.4e-15       2     159 ..       4     142 ..       3     201 .. 0.84

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 5.4e-19
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnlle 100
                 lV+Ga+G++G  ++++  ++g++v+g  + + + + +    +e  +ld+tdr+a+++l++ ++p av+             ++ d +  ++ g+ n++ 
  KIR61191.1   4 LVVGASGYLGGEVCRRAVAAGQRVVGTYHANPGAPAG----VEARRLDVTDRAAVRALVAAVRPAAVVST----------PYRYDDWTVTADGAANVAY 88 
                 9*****************************5555555....5667***************9999999988..........566777889999******* PP

                 HHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHH CS
   Epimerase 101 aarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaq 159
                 aa +ag+ rl++lsS+++    +e p  ++       p  +Y+aaK+a+e  v+a+   
  KIR61191.1  89 AAAEAGA-RLVHLSSDALHAGRPE-PYADDD---VPTPVFAYGAAKAAAETAVRAVDPG 142
                 *******.*******999987777.755555...4579****************98654 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   5.2   7.9e-11     2e-07       1     157 [.       7     163 ..       7     198 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 7.9e-11
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-S..EEEES---TCC...HHHHHHHHHHHHHHCT- CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgad..aVvsalggggk...deegaknivdaakeagv 90 
                     GA+G  G +++++++a+g  +v+        +      +g+e+  +dvtd +++++ ++ +   aVvs+  + ++   +++ga+n++ aa eag 
      KIR61191.1   7 GASGYLGGEVCRRAVAAG-QRVVGTYHANPGA-----PAGVEARRLDVTDRAAVRALVAAVRpaAVVSTPYRYDDwtvTADGAANVAYAAAEAGA 95 
                     9****************7.5665544333333.....479*******************99886899999766666688899************9 PP

                     -EEEEEEE..TTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE-ST.--SEEEE CS
  NAD_binding_10  91 kRfvlvsa..igvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggLtdep.ttkyrvv 157
                      R+v +s+  +++g+  p + ++ + + + ay aak+aae  +ra +     vr + +  ++ ++++r+ 
      KIR61191.1  96 -RLVHLSSdaLHAGRPEPYADDD-VPTPVFAYGAAKAAAETAVRAVDPGAALVRTSLIVGDErSKQVRLC 163
                     .7777776335666554444444.456678999************9999999999888665536666654 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   4.9e-07    0.0012       1     179 [.       4     151 ..       4     162 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.9e-07
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+ G +G+ G  ++++ ++ g++v+g+ + +     g  +             ++  + D+tD+++++ l+a v+p +v         ++ +++  
     KIR61191.1   4 LVVGASGYLGGEVCRRAVAAGQRVVGTYHAN----PGAPAG------------VEARRLDVTDRAAVRALVAAVRPAAV------VSTPYRYDD-- 75 
                    7889999999999999999999999865433....333333............344689****************9755......567777887.. PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEE CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngi 179
                      + v++ G++++  a+ ++g    +r+++ S++ +     e p+ ++   +P   Y+aaK++a++ v++      l  ++ i
     KIR61191.1  76 --WTVTADGAANVAYAAAEAG----ARLVHLSSDALHAGRPE-PYADDDVPTPVFAYGAAKAAAETAVRAVDPGAALVRTSLI 151
                    ..7888899*******99987....69*********977765.555556668****************998776666666555 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.4    0.0003      0.76       2      66 ..       4      62 ..       3     148 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0003
                EESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-S CS
        NmrA  2 lviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvd 66
                lv+Ga+G++G+ v r +++ag +v    +       +  + aGve    d+ d++ +++++  v 
  KIR61191.1  4 LVVGASGYLGGEVCRRAVAAGQRVVGTYHA------NPGAPAGVEARRLDVTDRAAVRALVAAVR 62
                8********************998654443......33344555555555555555555555444 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.9     4e-05       0.1       3      72 ..       3      62 ..       1      65 [. 0.81
   2 ?   -3.6   0.1       2.5   6.5e+03      16      28 ..      86      98 ..      82     107 .. 0.54
   3 ?    1.2   0.1     0.085   2.2e+02     147     162 ..     123     138 ..     117     144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4e-05
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekav 72
                 lv+Gas+ +G +++++ +++G +vv   +++++ + +          + a ++Dvtdr++v+alv++++
  KIR61191.1  3 LLVVGASGYLGGEVCRRAVAAGQRVVG-TYHANPGAPAG---------VEARRLDVTDRAAVRALVAAVR 62
                69***********************88.45555553333.........4566799999999999999875 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.5
                HHHHHHHTT-EEE CS
   adh_short 16 iakelakeGakvv 28
                +a++ a++Ga++v
  KIR61191.1 86 VAYAAAEAGARLV 98
                3444444444444 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.085
                 HHHHHHHHHHHHHHHH CS
   adh_short 147 aaYsAsKaavagltrs 162
                  aY+A+Kaa +  +r+
  KIR61191.1 123 FAYGAAKAAAETAVRA 138
                 58*******9877665 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.3   0.00045       1.2       6      64 ..      12      62 ..       7      65 .. 0.86
   2 ?    2.7   1.2      0.03        76     139     154 ..     122     138 ..      78     151 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00045
                  HHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHH CS
  adh_short_C2  6 IGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevv 64
                  +G ++ +++ ++G +vv t+  + +        +  g e+ ++DVtd+++v+alv++v+
    KIR61191.1 12 LGGEVCRRAVAAGQRVVGTYHANPG--------APAGVEARRLDVTDRAAVRALVAAVR 62
                  6778899999999999999999998........45688899**************9986 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.03
                   T.HHHHHHHHHHHHHHH CS
  adh_short_C2 139 n.aygaaKaalealtry 154
                     aygaaKaa e  +r+
    KIR61191.1 122 VfAYGAAKAAAETAVRA 138
                   25899999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2015.04
//
Query:       KIR61192.1  [L=70]
Description: hypothetical protein TK50_25985 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.47
# Mc/sec: 447.00
//
Query:       KIR61193.1  [L=498]
Description: recombinase RarA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-68  228.5   0.5    1.4e-67  226.8   0.0    1.9  2  MgsA_C           MgsA AAA+ ATPase C terminal
    5.7e-25   87.5   2.3    5.7e-25   87.5   2.3    2.6  2  AAA_assoc_2      AAA C-terminal domain
    2.9e-18   66.6   0.0    9.9e-18   64.8   0.0    1.8  2  AAA              ATPase family associated with various cellul
    1.7e-12   47.4   0.0    3.7e-12   46.3   0.0    1.6  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    4.4e-09   36.5   0.0    3.4e-08   33.6   0.0    2.1  1  AAA_5            AAA domain (dynein-related subfamily)
    3.6e-07   30.7   4.7     0.0029   18.0   0.0    3.2  3  AAA_16           AAA ATPase domain
      3e-06   27.0   0.0       0.02   14.6   0.0    2.3  2  Sigma54_activat  Sigma-54 interaction domain
    1.2e-05   24.9   0.0       0.16   11.4   0.0    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    1.3e-05   25.5   0.0      0.039   14.2   0.0    2.4  2  AAA_22           AAA domain
    3.1e-05   23.8   0.0    0.00013   21.9   0.0    2.0  2  AAA_3            ATPase family associated with various cellul
    0.00097   19.3   0.0     0.0018   18.4   0.0    1.4  1  Sigma54_activ_2  Sigma-54 interaction domain
     0.0012   18.6   0.0     0.0023   17.7   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
     0.0012   18.9   0.0     0.0018   18.3   0.0    1.3  1  AAA_14           AAA domain
     0.0018   17.6   0.0     0.0036   16.6   0.0    1.5  1  Zeta_toxin       Zeta toxin
     0.0021   17.7   3.5     0.0033   17.0   0.1    2.7  3  AAA_25           AAA domain
     0.0023   18.4   0.0     0.0063   17.1   0.0    1.7  1  AAA_18           AAA domain
     0.0062   16.3   0.0      0.013   15.3   0.0    1.5  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
  ------ inclusion threshold ------
      0.013   15.9   0.4       0.86    9.9   0.1    2.3  2  AAA_19           AAA domain
      0.033   13.4   0.0      0.053   12.7   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
      0.034   14.3   0.0      0.073   13.2   0.0    1.6  1  AAA_33           AAA domain
      0.039   14.0   0.0        2.6    8.0   0.0    2.1  2  ResIII           Type III restriction enzyme, res subunit
      0.046   13.4   0.0        0.1   12.3   0.0    1.6  2  AAA_24           AAA domain
      0.059   13.8   0.0      0.099   13.0   0.0    1.3  1  RNA_helicase     RNA helicase
      0.066   13.3   0.0       0.12   12.5   0.0    1.4  1  SKI              Shikimate kinase
      0.067   13.1   0.0       0.14   12.1   0.0    1.5  1  NTPase_1         NTPase
       0.15   11.2   0.0       0.68    9.0   0.0    1.8  1  MCM              MCM P-loop domain
       0.18   11.0   0.0       0.27   10.4   0.0    1.2  1  NB-ARC           NB-ARC domain
       0.19   11.4   0.0       0.28   10.9   0.0    1.2  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.21   11.1   0.0       0.33   10.5   0.0    1.2  1  AAA_7            P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> MgsA_C  MgsA AAA+ ATPase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2       1.7   1.1e+03      42      75 ..     230     263 ..     220     282 .. 0.84
   2 !  226.8   0.0   2.3e-70   1.4e-67       1     163 [.     286     448 ..     286     452 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.7
                 THHHHHHHHHHHHHHH-TTTTHHHHHHHHHHHHC CS
      MgsA_C  42 qalqlavaaaeaveriGlpEariaLaqavvylal 75 
                 +al+   aaa ++  +G+   ++a a+ +v +a 
  KIR61193.1 230 KALTALEAAAASAAALGVDRIDLATAEQAVDVAA 263
                 6788889999999999999999999999999886 PP

  == domain 2  score: 226.8 bits;  conditional E-value: 2.3e-70
                 TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHHHHCS----GG.GHHHHHHHHH------ CS
      MgsA_C   1 GSdpdAAlyylarmleaGedprfiaRRlviiAseDiGlAdpqalqlavaaaeaveriGlpEariaLaqavvylalapKSnaaykAikkaledvkekksl 99 
                 GSd+dAAl++larml aGed rfiaRRlvi+AseD+G+Adp al +a+aaa+ave++GlpEa+++Laqav++la+apKSn+a++Ai +a++dv++++ +
  KIR61193.1 286 GSDVDAALHWLARMLVAGEDARFIARRLVIFASEDVGMADPGALGVATAAAQAVEFVGLPEAQLNLAQAVIHLATAPKSNSATTAIGAATADVRAGRGG 384
                 9************************************************************************************************** PP

                 ---GGGST...........T-T---GGG--SS------S-CCG--..--------HHHHHHH-X CS
      MgsA_C 100 evPlhLrnaptklakklgygkgYkyphdypegvvkqqylpdelkkkkfYepterglekkikerl 163
                 +vP+ Lr+a++++a+ lg+g+gY+yphd+p+gvv+qqy pd+l  +++Y+p+ +g+e+++++rl
  KIR61193.1 385 PVPRGLRDAHYSGARGLGHGTGYRYPHDDPRGVVTQQYAPDDLVGADYYRPSGHGAERAVAARL 448
                 *******************************************999*************99887 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2       2.7   1.6e+03       7      25 ..     187     205 ..     185     209 .. 0.89
   2 !   87.5   2.3   9.1e-28   5.7e-25       4      81 .]     209     285 ..     206     285 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2.7
                  XXXXXXXXXXXXXXXXXXX CS
  AAA_assoc_2   7 leddalealaeladGDaRk 25 
                  l+d a++ l++ a  DaR 
   KIR61193.1 187 LDDAAVRDLLRRAVTDARG 205
                  7899*************95 PP

  == domain 2  score: 87.5 bits;  conditional E-value: 9.1e-28
                  .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHH CS
  AAA_assoc_2   4 klkleddalealaeladGDaRkaLnlLElaaeaaeakegkieitledleealqrkalryDkagdehYdliSAlhKSiR 81 
                  +++l+ da ++l++la+GD+RkaL++LE+aa++a+a  g  +i+l+++e+a++ +a+ryD+agd+hYd+ SA++KS+R
   KIR61193.1 209 AFTLQADAEDHLVRLAGGDVRKALTALEAAAASAAA-LGVDRIDLATAEQAVDVAAVRYDRAGDAHYDVTSAFIKSMR 285
                  57899************************9999987.9***************************************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   1.6e-20   9.9e-18       1     124 [.      74     179 ..      74     186 .. 0.89
   2 ?   -1.6   0.0       5.3   3.3e+03      60     114 ..     243     323 ..     208     331 .. 0.58

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 1.6e-20
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS...TS.EEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakeka...kp.silfiDEidalaksrsgseseeeervvnqLlteldg 95 
                 v+l+GppG+GKT++a+ va+ ++++f+ +s+ +          k++r+++++a++++   +p ++lfiDE++++ k++           ++ Ll+++++
  KIR61193.1  74 VILWGPPGCGKTTIAHLVANATDRRFVAMSALTAG-------VKDVRAVIDTARRQRrsgGPpTVLFIDEVHRFSKTQ-----------QDSLLAAVED 154
                 69***************************998888.......99********99998999555***************...........*********9 PP

                 TTTSSSTEEEEEEESS..GGGSTHHHHSTTS CS
         AAA  96 vkkkeskvivigatnr..pdkldpallrgRf 124
                  +      ++++at++  + ++ ++ll +R+
  KIR61193.1 155 RTV-----TLLAATTEnpYFSVISPLL-SRC 179
                 988.....5666666657888888888.887 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 5.3
                 EEEEEETGGGHHHHH........TTCCCHHHHHHHHHHHHHHHHTTTS..................SSTEEEEEEESSGGG CS
         AAA  60 silfiDEidalaksr........sgseseeeervvnqLlteldgvkkk..................eskvivigatnrpdk 114
                   l +D id  + ++         +++ + + +v +++++ + g + +                   ++ +vi a+ ++ +
  KIR61193.1 243 AALGVDRIDLATAEQavdvaavrYDRAGDAHYDVTSAFIKSMRGSDVDaalhwlarmlvagedarfIARRLVIFASEDVGM 323
                 555555555555555555555555556666677777777777776666555555555555555555333456666655555 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0     6e-15   3.7e-12       1     117 [.      41     161 ..      41     173 .. 0.75

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 6e-15
      RuvB_N   1 lrPksleeyigqekvkek...lkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsgPvlekagdlaalltnleek.......dvlf 89 
                 +rP s++e +gq+++ +    l+ ++        +   v+l GpPG Gktt+a+++a+  + ++ + s+ +    +d+ a++ + +++        vlf
  KIR61193.1  41 MRPASIDELVGQQHLLAPgapLRQLVGG-----ATPMSVILWGPPGCGKTTIAHLVANATDRRFVAMSALT-AGVKDVRAVIDTARRQrrsggppTVLF 133
                 5888888888888776431113333333.....345579*********************99998887754.556788888766654322333337*** PP

      RuvB_N  90 ideihrlsraveevlysamedfrldivi 117
                 ide+hr+s++ ++ l +a+ed ++ ++ 
  KIR61193.1 134 IDEVHRFSKTQQDSLLAAVEDRTVTLLA 161
                 *********************9998765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   5.5e-11   3.4e-08       1     102 [.      73     165 ..      73     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 5.5e-11
                 EEEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrlllee 98 
                 +v+L GppG+gK+++a  +a a+ +r v + +lt++   +d++  +++             r++  + +l++DEv+r ++  ++sLl   e+r++ l  
  KIR61193.1  73 SVILWGPPGCGKTTIAHLVANATdRRFVAMSALTAG--VKDVRAVIDT--------ARRQRRSGGPPTVLFIDEVHRFSKTQQDSLLAAVEDRTVTLLA 161
                 59*********************5555555567774..5677777774........344456677888***************************9988 PP

                 SSSE CS
       AAA_5  99 ggel 102
                  +++
  KIR61193.1 162 ATTE 165
                 8776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.7e-06    0.0029      22      53 ..      68      99 ..      60     111 .. 0.75
   2 !   12.2   0.0   0.00028      0.17     118     161 ..     111     154 ..     100     172 .. 0.76
   3 ?    0.1   1.1       1.5   9.5e+02      41      98 ..     192     244 ..     189     316 .. 0.59

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.7e-06
      AAA_16 22 grp.elvllsGesGvGKsslvrellralekdgg 53
                g +  +v+l G++G+GK++++  +++a  ++ +
  KIR61193.1 68 GATpMSVILWGPPGCGKTTIAHLVANATDRR-F 99
                444599*****************99644444.3 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00028
      AAA_16 118 rllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrl 161
                 ++++++  + ++ +++++p+vl++D+++++  ++++ l a +++
  KIR61193.1 111 DVRAVIDTARRQRRSGGPPTVLFIDEVHRFSKTQQDSLLAAVED 154
                 5555566666666677779*************999996665554 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.5
      AAA_16  41 vrellralekd.....ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawr 98 
                 vr llr++ +d     g+++l+++++++        l++++   + +r+ l+++e+a+++a++
  KIR61193.1 192 VRDLLRRAVTDarglaGAFTLQADAEDH--------LVRLA-G-GDVRKALTALEAAAASAAA 244
                 6666666666667665555688888888........55555.4.4444444443332222222 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00084      0.52      21      50 ..      70      99 ..      59     111 .. 0.83
   2 !   14.6   0.0   3.3e-05      0.02      96     130 ..     131     165 ..     123     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00084
                     SSS-EEEECSTTSSHHHHHHHHHHHSTTTT CS
  Sigma54_activat 21 tdlsvlitGesGtGKellaraiheaskrke 50
                     t++sv++ G  G+GK+++a+++ +a++r+ 
       KIR61193.1 70 TPMSVILWGPPGCGKTTIAHLVANATDRRF 99
                     6899*****************999887754 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.3e-05
                      EEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSE CS
  Sigma54_activat  96 tlfLDeigelplelQekLlrvlqegevervGsske 130
                      +lf+De+++++ + Q  Ll ++++++v+ + +++e
       KIR61193.1 131 VLFIDEVHRFSKTQQDSLLAAVEDRTVTLLAATTE 165
                      7*************************998877665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00032       0.2      24      42 ..      73      91 ..      63     122 .. 0.87
   2 !   11.4   0.0   0.00025      0.16     109     146 ..     131     168 ..     123     177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00032
  Mg_chelatase 24 nlllvGppGsGKtmlakrl 42
                  +++l GppG+GKt +a+ +
    KIR61193.1 73 SVILWGPPGCGKTTIAHLV 91
                  799************9865 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00025
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePledgevtisrakakvef 146
                   vLf+DE+  f+++  ++L   +ed++vt+  a+++  +
    KIR61193.1 131 VLFIDEVHRFSKTQQDSLLAAVEDRTVTLLAATTENPY 168
                   9***************************9988877655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.3e-05     0.039       7      31 ..      73      97 ..      69     112 .. 0.83
   2 !    8.7   0.0    0.0032         2      80     112 ..     113     148 ..     107     166 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.3e-05
      AAA_22  7 ilvvtGesGtGKTtllrrlleqlde 31
                +++++G++G+GKTt +  +++  d+
  KIR61193.1 73 SVILWGPPGCGKTTIAHLVANATDR 97
                789****************999853 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0032
      AAA_22  80 ealeqalrarav....ielliiDEaqhlrseealeeL 112
                 +a+ + +r++++    + +l iDE++++ s+++   L
  KIR61193.1 113 RAVIDTARRQRRsggpPTVLFIDEVHRF-SKTQQDSL 148
                 5677777777778888************.75544444 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0     2e-07   0.00013       2     100 ..      74     166 ..      73     178 .. 0.82
   2 ?   -2.8   0.0       8.9   5.5e+03      33      49 ..     419     435 ..     415     444 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2e-07
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanllladeinrappktqsalleameerqvtvegethkl 100
                 v+l g PG +kt++++ +a+a d +f  +      l + +  ++ + +++++ + + Gp    +l+ de+ r +   q +ll a+e+r+vt+  +t++ 
  KIR61193.1  74 VILWGPPGCGKTTIAHLVANATDRRFVAM----SALTAGVKDVRAVIDTARRQRRSGGP--PTVLFIDEVHRFSKTQQDSLLAAVEDRTVTLLAATTEN 166
                 78999****************99988654....45667777777666667777778888..57999*************************99888763 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 8.9
       AAA_3  33 tpdllPsdilGtevfee 49 
                 t    P d++G+++++ 
  KIR61193.1 419 TQQYAPDDLVGADYYRP 435
                 7777899****999976 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     3e-06    0.0018      21      96 ..      71     155 ..      61     175 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3e-06
                      SS-EEEEEETT--HHHHHHCC--TTS-.EE--SSTTHHHH-HHHHHHHT........TTSEEEEEE-TT--HHHHHHHHHHHHHH CS
  Sigma54_activ_2  21 klpvfltGekGsgkelvArlLhknsgp.wleifvverlaklpldlleqa........kggtLylkdiadlskaeqkeLlellaka 96 
                       + v l G++G+gk+++A l ++   +  +++  +  ++k    ++++a         + +L++ +++ +sk +q  Ll +++  
       KIR61193.1  71 PMSVILWGPPGCGKTTIAHLVANATDRrFVAMSALTAGVKDVRAVIDTArrqrrsggPPTVLFIDEVHRFSKTQQDSLLAAVEDR 155
                      4568999**************998665156666666677777777777666677666788******************9887754 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.7e-06    0.0023      49     138 ..      73     156 ..      66     178 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.7e-06
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrdgklaralkrllkv.dllilDdlgllpldqaeaellfeviekry 138
                 +++l Gp+G GK+ +a  ++     + +  +fv +++L + +k  r+    ar+++r   + ++l +D++  + +++ ++  l+  +e+r 
  KIR61193.1  73 SVILWGPPGCGKTTIAHLVA-----NATDRRFVAMSALTAGVKDVRAVIDTARRQRRSGGPpTVLFIDEV--HRFSKTQQDSLLAAVEDRT 156
                 689***********997555.....455668************9999877777776665544*******7..7899999999999999875 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.8e-06    0.0018       5      90 ..      74     155 ..      70     188 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.8e-06
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpew.ekalkslvdeg 90 
                 +++ G+  +GKTt+++ +++      ++++ ++  +   k+ +    ++++ +++ ++   t+lf+DE+++ ++  ++ l   v+++
  KIR61193.1  74 VILWGPPGCGKTTIAHLVANATD---RRFVAMSALTAGVKDVRAV--IDTARRQRRSGGPPTVLFIDEVHRFSKTqQDSLLAAVEDR 155
                 7899**********988886655...9999999998888777754..3444444444557899*******98664145555555554 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.8e-06    0.0036      14      47 ..      69     100 ..      63     155 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.8e-06
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdelerqgnvv 47 
                  +P +++l G pG+GK+++a+l+++++  ++++v
  KIR61193.1  69 ATPMSVILWGPPGCGKTTIAHLVANAT--DRRFV 100
                 68***********************98..55555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   5.3e-06    0.0033      14      53 ..      53      91 ..      40     100 .. 0.81
   2 ?   -1.6   0.0       2.6   1.6e+03     126     157 ..     112     143 ..      91     162 .. 0.61
   3 ?   -0.8   0.1       1.5   9.5e+02      82     146 ..     258     309 ..     249     315 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 5.3e-06
      AAA_25 14 d.laapppprrwlvkgllpagelallaGapgtGKttlaldl 53
                + l ap +p+r+lv+g  p    ++l+G+pg+GKtt+a  +
  KIR61193.1 53 QhLLAPGAPLRQLVGGATP--MSVILWGPPGCGKTTIAHLV 91
                3488999**********98..7799***********99655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.6
      AAA_25 126 ltadvdaleaaieeveg.vrlvviDplsralgg 157
                 + a++d  +++ ++  g + ++ iD + r+   
  KIR61193.1 112 VRAVIDTARRQRRS-GGpPTVLFIDEVHRFSKT 143
                 34444443333333.225888888888887765 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.5
      AAA_25  82 sedelrrRlravgealrddarllvldlagveslpLfakdrggtlltadvdaleaaieevegvrlv 146
                 + d  + R+ ++g a+      +v+++        f k  +g+ ++a++++l++ + + e++r++
  KIR61193.1 258 AVDVAAVRYDRAGDAH-----YDVTSA--------FIKSMRGSDVDAALHWLARMLVAGEDARFI 309
                 4444444555444332.....222221........333445667788888888888877766665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     1e-05    0.0063       1     110 [.      74     223 ..      74     240 .. 0.57

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf..............gvnlrdvakenglllevdpe...aldeskrldedkldklldaleenss............. 69 
                 ++l G+pG+GKtt+a+ +++ +                ++ ++d+a+  + + +   +    +de +r+ + ++d+ll a+e                 
  KIR61193.1  74 VILWGPPGCGKTTIAHLVANATDRrfvamsaltagvkdVRAVIDTARRQRRSGGP--PtvlFIDEVHRFSKTQQDSLLAAVEDRTVtllaattenpyfs 170
                 7999**************8886333566666666655555555555443322222..133556677777777777777666664335555555555555 PP

      AAA_18  70 ....aleegknlvidghlaeleseaakdikk........vvLtaspeelleRl 110
                      l  +  l ++ +    + + ++++++        + L+a+ e +l Rl
  KIR61193.1 171 vispLLSRCVLLTLQPLDDAAVRDLLRRAVTdarglagaFTLQADAEDHLVRL 223
                 55554444444444444444444444444444444444466666666666666 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.2   3.2e+03      21      42 ..      73      94 ..      64     101 .. 0.85
   2 !   15.3   0.0   2.1e-05     0.013      83     162 ..     107     187 ..      82     188 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.2
  DNA_pol3_delta2 21 ayLfeGdegigkkelalnlaka 42
                     + ++ G+ g+gk ++a  +a+a
       KIR61193.1 73 SVILWGPPGCGKTTIAHLVANA 94
                     678999**********999876 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.1e-05
  DNA_pol3_delta2  83 ikldqirelieelsrkpre.skkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtn...klLktirSRcqelkfspl 162
                        + ++r +i+++ r+ r  +   ++ i+++ + +k  + +lL  +E+    ++ +L ++ +n   +++ ++ SRc  l+++pl
       KIR61193.1 107 AGVKDVRAVIDTARRQRRSgGPPTVLFIDEVHRFSKTQQDSLLAAVEDR---TVTLLAATTENpyfSVISPLLSRCVLLTLQPL 187
                      568899*9999999999986789999********************975...7777766666622356*************997 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1    0.0014      0.86      12      40 ..      73     100 ..      63     118 .. 0.75
   2 ?    3.4   0.0      0.15        90     104     132 ..     130     159 ..     109     165 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0014
      AAA_19  12 vllvtaGpGtGKTrvlkhivallvelggv 40 
                  +++ ++pG+GKT+ + h va + +++ v
  KIR61193.1  73 SVILWGPPGCGKTT-IAHLVANATDRRFV 100
                 68999*******97.56677666666655 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.15
      AAA_19 104 ellivDEfqdvd.elqyrLlkallgekkkl 132
                 ++l++DE+   +  +q +Ll a+ +++ +l
  KIR61193.1 130 TVLFIDEVHRFSkTQQDSLLAAVEDRTVTL 159
                 589*********999999**9999666445 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.5e-05     0.053      44     116 ..      62     137 ..      38     156 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.5e-05
      DUF815  44 teqfleglpannvLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvellrerper....filfvDDL 116
                  +q++ g++   v+LwG  G+GK ++ + + n++ ++ +++  ++   +k++ +++++ r++++      +lf+D +
  KIR61193.1  62 LRQLVGGATPMSVILWGPPGCGKTTIAHLVANATDRRFVAMSALT-AGVKDVRAVIDTARRQRRSggppTVLFIDEV 137
                 5789999999****************9999999998888876665.4577787777777766543222367777765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00012     0.073       2      28 ..      74     100 ..      74     172 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00012
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avll 28 
                 v+l G+pG+GK+t a+ ++++++  +  +
  KIR61193.1  74 VILWGPPGCGKTTIAHLVANATDrrF--V 100
                 7899************9998877443..3 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.079        49      26      46 ..      73      93 ..      54     103 .. 0.83
   2 ?    8.0   0.0    0.0043       2.6     128     168 ..     124     163 ..      98     166 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.079
                EEEEEESTTSTHHHHHHHHHH CS
      ResIII 26 rglikmaTGtGKTlvaaklie 46
                 ++++ + G+GKT +a  ++ 
  KIR61193.1 73 SVILWGPPGCGKTTIAHLVAN 93
                5789*********99866554 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0043
                 HHTTT-SEEEEETGGGTTS.TTTHHHHHT---SEEEEEESS CS
      ResIII 128 llrdrfdviiiDEaHrlgakkswreilekfkeavllglTAT 168
                  + +   v++iDE+Hr+++ ++  ++l ++++ ++  l AT
  KIR61193.1 124 RSGGPPTVLFIDEVHRFSK-TQQDSLLAAVEDRTVTLLAAT 163
                 33344459**********9.655556666555555555555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00017       0.1       2      22 ..      71      91 ..      70     155 .. 0.70
   2 ?   -3.1   0.0         9   5.5e+03      49      91 ..     192     234 ..     181     243 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00017
      AAA_24  2 klkiliyGpsgiGKTtlakel 22
                +++++++Gp+g GKTt+a   
  KIR61193.1 71 PMSVILWGPPGCGKTTIAHLV 91
                57899***********99877 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9
      AAA_24  49 wedfldevvelaaeladyktlviDtideleelclaevirqnek 91 
                 + d+l  +v++a+ la+  tl  D  d+l++l+  +v+++  +
  KIR61193.1 192 VRDLLRRAVTDARGLAGAFTLQADAEDHLVRLAGGDVRKALTA 234
                 5677778888888888888888899999999999998887666 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00016     0.099       1      23 [.      74      96 ..      74     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00016
  RNA_helicase  1 iwlyGpsgeGKStlakeLakall 23
                  ++l+Gp+g+GK+t+a+ +a+a  
    KIR61193.1 74 VILWGPPGCGKTTIAHLVANATD 96
                  689*************9888765 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00019      0.12       1      22 [.      80     101 ..      80     110 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00019
                 TTSSHHHHHHHHHHHHTSEEEE CS
         SKI   1 mGaGKstvGkllAkklglefiD 22 
                 +G+GK+t+++l+A++ +++f+ 
  KIR61193.1  80 PGCGKTTIAHLVANATDRRFVA 101
                 6*******************85 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00022      0.14       2      26 ..      74      98 ..      73     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00022
                EEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkss 26
                v++ GppG GKtT+ + v+++ +++
  KIR61193.1 74 VILWGPPGCGKTTIAHLVANATDRR 98
                7899**************9987655 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0011      0.68      59     154 ..      73     161 ..      68     179 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
                 EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSEEEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEES CS
         MCM  59 nvllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaavvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaK 154
                  v+l g pg++K+++ + v++ ++r   +  + + ++  + av  d++ ++    +G        v+ iDe+ + +++++++l+ a+E+ t+++  
  KIR61193.1  73 SVILWGPPGCGKTTIAHLVANATDRRFVAMSALTAGVKDVRAVI-DTARRQ-RRSGG-----PPTVLFIDEVHRFSKTQQDSLLAAVEDRTVTLLA 161
                 57888888888888888888666665554444444444344443.222222.22233.....34599************************98765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00043      0.27      22      43 ..      73      94 ..      62     108 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00043
                EEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 22 vvalvGmgGvGKttlakqilnk 43
                 v l G +G+GKtt+a+ + n 
  KIR61193.1 73 SVILWGPPGCGKTTIAHLVANA 94
                68899***********999887 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00045      0.28       5      75 ..      78     141 ..      74     170 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00045
  Viral_helicase1   5 GvpGcGKStlirkllrtsliltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEylllh 75 
                      G pGcGK+t+   +++      ++r+ +++ ++      ++    +d++  ++  +    +l++DE  +  
       KIR61193.1  78 GPPGCGKTTIAHLVANA-----TDRR-FVAMSALT-AGVKDVRAVIDTARRQRRSGGPPTVLFIDEVHRFS 141
                      78*******55555555.....4444.44444433.33344344456666655555566899999986655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00053      0.33      35     109 ..      73     137 ..      64     147 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00053
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylsltinfsaqts.anqlqdiiesklekrrkgvygPpggkklvvFvDDl 109
                 +v+l Gp G+GKt+i++ + ++ d       ++ +sa t   ++++ +i+    +r+++  gPp     v+F+D++
  KIR61193.1  73 SVILWGPPGCGKTTIAHLVANATD-----RRFVAMSALTAgVKDVRAVIDTA--RRQRRSGGPP----TVLFIDEV 137
                 799************999998888.....55666677665256777777764..4444445665....46677766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 3555.41
//
Query:       KIR61194.1  [L=153]
Description: hypothetical protein TK50_26000 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-24   86.0  10.0    4.9e-24   84.4   8.7    2.2  2  DUF948         Bacterial protein of unknown function (DUF948)
    0.00073   19.6   3.6    0.00095   19.2   3.6    1.2  1  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
  ------ inclusion threshold ------
      0.028   14.4   0.5      0.028   14.4   0.5    1.8  2  Laminin_II     Laminin Domain II
      0.085   13.3   6.4       0.12   12.8   4.9    1.8  2  NPV_P10        Nucleopolyhedrovirus P10 protein
      0.092   13.1   0.2       0.15   12.4   0.2    1.4  1  DUF3181        Protein of unknown function (DUF3181)
        0.1   10.8   2.3       0.15   10.2   1.7    1.4  1  EzrA           Septation ring formation regulator, EzrA
       0.26   11.1   1.9       0.25   11.1   0.6    1.7  2  DASH_Duo1      DASH complex subunit Duo1


Domain annotation for each model (and alignments):
>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   8.7   1.9e-27   4.9e-24       1      88 [.       6     100 ..       6     101 .. 0.95
   2 ?    0.4   0.0      0.31     8e+02      31      52 ..     126     147 ..     105     153 .] 0.70

  Alignments for each domain:
  == domain 1  score: 84.4 bits;  conditional E-value: 1.9e-27
      DUF948   1 IAglIaAiAFvvLviflivvllklkktldeaaatieelekqvdpilkevedllakvne.......lledvneklekvdplteavadlgesvseln 88 
                 +A+lIaAiAF++Lv++l  ++l+l++t+d+a+++i++l++++ p+l +v++++++vn+        l++vn +l+kvd++t+++++++++v++l 
  KIR61194.1   6 VAALIAAIAFAMLVLILTLPILRLRHTVDAATRMINDLNDRTAPLLGDVNTTVKNVNTaleqvqvSLDGVNLQLAKVDTMTTHAQNVTANVANLA 100
                 79********************************************************88888888888999********************996 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.31
      DUF948  31 aaatieelekqvdpilkevedl 52 
                 aa++ +e+e++v+ ++k+ +++
  KIR61194.1 126 AARRHAETEREVRDTIKQQRRA 147
                 5666667777777777766555 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   3.6   3.7e-07   0.00095      36     117 ..      29     116 ..      16     138 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.7e-07
  Baculo_PEP_C  36 latlldaietqLnalsedlksllaeldt...rldtlltnLtdalnalq......dtlrneLtnlnsiltnLlssvtNinstLnnllqalnn 117
                   l +++da  + +n+l+++   ll +++t   +++t+l++++ +l  ++      dt++++ +n++++++nL++    + ++ +n l  +++
    KIR61194.1  29 LRHTVDAATRMINDLNDRTAPLLGDVNTtvkNVNTALEQVQVSLDGVNlqlakvDTMTTHAQNVTANVANLATV---VSAAAANPLVKVAA 116
                   56677777777777777777777766664444444444555555544466667778888888888888888743...34444455555555 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.5   1.1e-05     0.028      33     102 ..      40     106 ..      18     118 .. 0.78
   2 ?   -1.8   1.2       1.1   2.8e+03      94     107 ..     136     149 ..     123     150 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.1e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHHHHHHHHH CS
  Laminin_II  33 lseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseikelIaqA 102
                 ++ +n   ++t  ++ d n++++ ++++  +++  ++ +  +l ++++   + +++ +n+ ++   +++A
  KIR61194.1  40 INDLN---DRTAPLLGDVNTTVKNVNTALEQVQVSLDGVNLQLAKVDTMTTHAQNVTANVANLATVVSAA 106
                 33333...44788888999999999999999999999999999999999999999999999999999887 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHH CS
  Laminin_II  94 eikelIaqARkaAn 107
                 e++  I+q R aA 
  KIR61194.1 136 EVRDTIKQQRRAAK 149
                 56777777777775 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.015        37      36      65 ..      35      65 ..      22      66 .. 0.65
   2 ?   12.8   4.9   4.8e-05      0.12       9      60 ..      54     105 ..      49     109 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.015
     NPV_P10 36 dvtelnekLdaqsa.qLaeletkvenIqdiL 65
                  t + + L++ +a  L +++t+v+n++  L
  KIR61194.1 35 AATRMINDLNDRTApLLGDVNTTVKNVNTAL 65
                4444444555554426899999999998776 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.8e-05
     NPV_P10   9 IradikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkven 60 
                 + + +k+v++ ++ +q ++d v+ +l +v+ ++++ ++ +a++a+l t v++
  KIR61194.1  54 VNTTVKNVNTALEQVQVSLDGVNLQLAKVDTMTTHAQNVTANVANLATVVSA 105
                 55789******************************************99975 PP

>> DUF3181  Protein of unknown function (DUF3181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   5.9e-05      0.15      28      82 ..      39      92 ..      30     114 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.9e-05
     DUF3181 28 lhtalAeelyplleeekeleeaavekvLkkikvklGggkkevsLldllpsqaved 82
                + + l  + +pll  + + + ++v+++L++++v+l g + +++ +d ++++a++ 
  KIR61194.1 39 MINDLNDRTAPLLG-DVNTTVKNVNTALEQVQVSLDGVNLQLAKVDTMTTHAQNV 92
                66778889999998.777899**********************999999988865 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.7   5.7e-05      0.15     447     498 ..      52     103 ..      43     106 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 5.7e-05
                 TTTSTTTHHHHHHHT-TT--HHHHHHHHHTTTTTSGGGTHHHHHHHHHHHHH CS
        EzrA 447 keasdeieelakeLekkpinikevnkrldeardlveklyektneliktAtla 498
                  +++  +++++  Le+++++++ vn +l ++ ++  + ++ t ++ + At +
  KIR61194.1  52 GDVNTTVKNVNTALEQVQVSLDGVNLQLAKVDTMTTHAQNVTANVANLATVV 103
                 578999**************************************99999865 PP

>> DASH_Duo1  DASH complex subunit Duo1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.1     8e+03      34      45 ..      30      41 ..      27      44 .. 0.60
   2 ?   11.1   0.6   9.8e-05      0.25       8      41 ..      57      90 ..      51      99 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.1
   DASH_Duo1 34 ketvestntLLd 45
                 +tv+ + ++++
  KIR61194.1 30 RHTVDAATRMIN 41
                556666666655 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 9.8e-05
   DASH_Duo1  8 qLrkinevienviesLkkaksniervketvestn 41
                +++++n+++e+v+ sL+ ++ ++ +v + +++++
  KIR61194.1 57 TVKNVNTALEQVQVSLDGVNLQLAKVDTMTTHAQ 90
                6899999999999999999999999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1543  (0.0860617); expected 358.6 (0.02)
Passed bias filter:                      701  (0.0390987); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1013.23
//
Query:       KIR61195.1  [L=101]
Description: hypothetical protein TK50_26005 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.18   11.5   0.0        0.2   11.3   0.0    1.1  1  Glyco_transf_5  Starch synthase catalytic domain


Domain annotation for each model (and alignments):
>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.1e-05       0.2       7      55 ..      26      75 ..      21      96 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.1e-05
  Glyco_transf_5  7 sEvaplaktGGLadvvgaLpkaLaklghdvrvilPry.gaikeekkelee 55
                      ++p   +GGL++ +g+L + L+    dvr+ +    ++i+e   + e 
      KIR61195.1 26 HAYTPAGIAGGLSQSAGGLVESLRSFVEDVRIGMAEReQEIHEAFARGEA 75
                    557788899***********************998886666665544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 716.18
//
Query:       KIR61196.1  [L=892]
Description: alanyl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.3e-184  614.8   0.0   1.5e-184  614.5   0.0    1.1  1  tRNA-synt_2c  tRNA synthetases class II (A)
    5.3e-16   59.3   4.6    5.3e-16   59.3   4.6    2.1  2  DHHA1         DHHA1 domain
    1.2e-14   54.1   0.2    2.5e-14   53.1   0.2    1.6  1  tRNA_SAD      Threonyl and Alanyl tRNA synthetase second addi


Domain annotation for each model (and alignments):
>> tRNA-synt_2c  tRNA synthetases class II (A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  614.5   0.0  2.6e-188  1.5e-184       1     550 [.       5     570 ..       5     572 .. 0.97

  Alignments for each domain:
  == domain 1  score: 614.5 bits;  conditional E-value: 2.6e-188
                   HHHHHHHHHHHCTT-EEE----SS-SSSTTCSS--SGGGGGHHHHTTSSCGGSSSEEEEEEEEE-EETTEEGGGGTTTSSS--SEEEEEEEEESSSS CS
  tRNA-synt_2c   1 eirekFldfFekkgHtvvksssvvpendptllfvnAgmaqfkpiflgkeakpklkravnsQkciRagGkhnDlenVGktarHhTfFeMlGnfsfgdY 97 
                   ei++++l +Fe++gH+vv+s+++ +  dp+llfvnAgm+qf p+flg++ +p+++rav+ QkciR+     D+++VGkt+rH TfF+M GnfsfgdY
    KIR61196.1   5 EIKRRYLAHFEANGHAVVPSAPLPAISDPNLLFVNAGMVQFVPYFLGQH-TPPYSRAVSVQKCIRTP----DIDEVGKTSRHGTFFQMNGNFSFGDY 96 
                   79***********************************************.*****************....************************** PP

                   -HHHHHHHHHHHHHTT.....TT--GGGEEEEEETTEHHHHHHHHHTTTTEGGGEEEE-HHHHEEESSSSEEEEEEEEEEEECETTSHHCHCCCCTT CS
  tRNA-synt_2c  98 fkeeaiefawelltke.....lgldkerlyvtvfeeddeaveiweklvgvpeerilrfgekdnfwemgdtgpcgpcseiyydrgeeigkrkaaseve 189
                   fk  ai +aw+l+tk+     +gld+er+++tv+ +ddea+eiw++++ +p+eri+r g+kdnfw+mg  gp gpcse+yydrg+++g    ++ +e
    KIR61196.1  97 FKAGAIPLAWDLVTKSvaeggFGLDPERIWATVYLDDDEAAEIWRSVG-MPAERIVRRGKKDNFWSMGIPGPAGPCSELYYDRGPAYGR---EGGPE 189
                   **************9889999*************************96.***************************************9...55556 PP

                   CTCCHEEEEEEEEEEEEEEST......TSHEEEEEEEEEEEEEEHHHHHHHHTTHSSGGGSCCTHHHHHHHHHHHT--T........CSTCCHHHHH CS
  tRNA-synt_2c 190 adddrvleiwnlvfmqfnree......dgtlkpLpkksidtGmglerlvavLqevrsnydtdlfvpvieaieeisgaty........edkdetdeal 272
                   +d+dr+le+wnlvfmqf+ +        ++   Lpkk+idtGmgler++++Lq v + y+ d ++p+++ ++e++g+ y        ++++  d++l
    KIR61196.1 190 VDEDRYLEFWNLVFMQFQIDDvqskeiFQIVGDLPKKNIDTGMGLERMASLLQGVDNLYEIDEVRPILARAAELTGKRYgahsghvaSESHPDDVRL 286
                   6****************98875555555566789**************************************************999888999**** PP

                   HHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHTTTGCCHHCCHHHHHHHHHHHHHHHHCCHHHHHHHH CS
  tRNA-synt_2c 273 rviaDHvralafaladGvvpsnegrgYvlRrllRravrhakkLglkekflaklvavvvevlgdvypelkekeekveeiieeEeerFakTlerGlkll 369
                   rviaDHvr++ ++++dGv+psnegrgYvlRr++Rra+r ++ Lg ++  l +l++v  + +++ ypel ++ +++++   +Ee +F+ Tl+ G+ +l
    KIR61196.1 287 RVIADHVRTALMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGWQDRALPELLPVARDCMAPSYPELAAEFDRISQYAYAEEDAFLATLRAGTTIL 383
                   ************************************************************************************************* PP

                   HHHHHHCCC..CSEEXHHHHHHHHHCHXXXHHHHHHHHHCTTXEEXHHHHHHHHHHHHHHHCCHHSXSSXXXXXXXXTTSHCHH...CCTSTTTXXX CS
  tRNA-synt_2c 370 eelikklkk..kkelsgedafkLydtyGfPvdltkeiaeekglkvdiegfekameeqrerskkekkekklikkdvealkelkkt...eeflgyeele 461
                   + +i+++k+  k +lsg++af+L+dtyGfP+dlt eia+e+gl+vd +gf+++m+ qr+r+k++++++k+ ++d++a++++ ++    ef+gy+el+
    KIR61196.1 384 DTAIAETKSagKPALSGDKAFQLHDTYGFPIDLTLEIAAEQGLQVDADGFRRLMADQRARAKADARARKTGHTDLSAYRSVLDAggpVEFTGYTELN 480
                   ******9999899********************************************************99********999999999********* PP

                   XXXTSXXXXXXSEEEEEEEEEETTEEEESEEXXXXSSSSCSXXXEEEEESSEEEEESEEEEET.TEEEEEXSS.XSXXXTTSEEEEEEXH CS
  tRNA-synt_2c 462 aeakvlallkdkefveeveegeevgvvLdrTpfYaesGGqigDeGliekegaefrvkdvqkak.gvvlhkgkleegklkvgdkvkaevde 550
                    e++v a+l+++ +v  ++eg++v +vLd+TpfYae+GGq+ D+Gli+  g++++v dvq+   g+++h++++ +g+++ g++  ae+d 
    KIR61196.1 481 RESRVRAVLSGGDQVGAAAEGDTVELVLDTTPFYAEGGGQQPDQGLITVGGGQVEVFDVQQPVpGLIVHRARVVRGEVRAGETGYAEIDV 570
                   *************************************************************999*******************9999996 PP

>> DHHA1  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.39   2.3e+03      56     117 ..     628     691 ..     624     698 .. 0.66
   2 !   59.3   4.6   8.9e-20   5.3e-16       2     138 .]     749     889 ..     748     889 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.39
                 HHHHHHHHHTHGBT.TCEEEEEEEECT.EEEEEEEESSH......SS-HHHHHHHHHHHTTCCEEEE..TCE CS
       DHHA1  56 lgiaadklksklkk.pvivfvakeegd.kvkvsarskkd......gvdagelakeaaaklgggGGGH..dlA 117
                 +++ +++++    +  v +fv+++e+  ++   a   ++       v +g+ a+e      + GG H  + A
  KIR61196.1 628 VEQQVNEVLL--ADlEVHAFVTSQEEArRIGAMALFGEKygervrVVEVGDYARE------LCGGTHvaRSA 691
                 5556666666..6667777777777766555555555456676667889999999......88888864444 PP

  == domain 2  score: 59.3 bits;  conditional E-value: 8.9e-20
                 HHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHTCEEECTCEEEEEECHCCHHHHHHHHHHHHHHTHG..BT.TCEEEEEEEECTEEEEEEEESSH....S CS
       DHHA1   2 eslneerkelekeleelkealaklkaeellekaeevkgvkvlvaevgeewdagalgiaadklkskl..kk.pvivfvakeegdkvkvsarskkd....g 93 
                 e+    ++++ekele+l+ +l    a++l  +a++v+gv ++ +e  e++  ++++++a +++ k+   + +v++++a  +g k++++++++++    g
  KIR61196.1 749 EQTVTQLRDAEKELEKLRAQLVLGGAAALAGQAKDVRGVAYVGTEAPEGAAGNDVRTLAQEIRGKIdpARpAVVAVAARSNG-KASLVVAVNAAarsrG 846
                 56667899**********************************************************9877677777777777.999999999889999* PP

                 S-HHHHHHHHHHHTTCCEEEE.TCEEEEEEEHCHHHHHHHHHHHHH CS
       DHHA1  94 vdagelakeaaaklgggGGGH.dlAaGagipaekleealealeeai 138
                 + a +l+k+   ++ g+GGG  dlA+G+g+pa +++++l+ +e+ai
  KIR61196.1 847 LAAKDLVKA---AFSGRGGGSdDLAQGGGLPAAEAPKLLATVEQAI 889
                 *********...999****************************997 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.2   4.2e-18   2.5e-14       1      44 []     669     712 ..     669     712 .. 0.98

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 4.2e-18
                 EEEEEETT.EEEEESS---SBGGGC-SEEEECCECCCTCEEEEE CS
    tRNA_SAD   1 vrvvsiGdisvelCgGtHvpnTgeIgafkilseesiakglrRIy 44 
                 vrvv++Gd+  elCgGtHv +  ++g++kilse s+++g+rRI+
  KIR61196.1 669 VRVVEVGDYARELCGGTHVARSAQLGLVKILSEASVGSGVRRIE 712
                 9*******999********************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (892 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 6366.60
//
Query:       KIR61197.1  [L=153]
Description: Holliday junction resolvase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-41  142.0   0.1    1.7e-41  141.8   0.1    1.0  1  RuvX      Holliday junction resolvase


Domain annotation for each model (and alignments):
>> RuvX  Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.8   0.1   9.3e-46   1.7e-41       2     134 ..       8     146 ..       7     147 .. 0.95

  Alignments for each domain:
  == domain 1  score: 141.8 bits;  conditional E-value: 9.3e-46
                 -EEEEEESSSEEEEEEE-S--SS---EEEEE---H......HHHHHHHHHHHHHTT--EEEEE------SSS---SSTTHHHHHHHHHT..T-EEEEE- CS
        RuvX   2 rilglDvGtkriGvAvsdplgilaspletierksk......ekdleelkelvkeeeveeiVvGlPlnldgsegesakkvrkfaeeLakrlkklpvelvD 94 
                 ++lg+DvG+ r+GvA sdp+g+la+pl t++r+ +       +d++el +l++e+e+ e+VvGlP+nl+g++g++a++v+++a++La+ ++++pv+l D
  KIR61197.1   8 VRLGVDVGQVRVGVARSDPHGVLATPLVTLARDLTtaedavPSDMAELVALIAEHECVEVVVGLPVNLSGQHGPAARNVKAYADRLADVIAPVPVTLTD 106
                 68****************************9774446677679******************************************************** PP

                 -S----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        RuvX  95 ErlttveaerilresglsrkkrkkvvDklaAviiLqsyLd 134
                 Er++tv a+r+l+e+g+++k++++vvD++aAv iLqs+Ld
  KIR61197.1 107 ERMSTVVASRRLAERGVRGKRQRAVVDQAAAVEILQSWLD 146
                 ***************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1260.53
//
Query:       KIR61198.1  [L=400]
Description: aminodeoxychorismate lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-64  218.4   0.1    1.6e-64  218.1   0.1    1.0  1  YceG      YceG-like family


Domain annotation for each model (and alignments):
>> YceG  YceG-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.1   0.1     9e-69   1.6e-64       1     274 [.      84     392 ..      84     393 .. 0.85

  Alignments for each domain:
  == domain 1  score: 218.1 bits;  conditional E-value: 9e-69
                 EEE-TT--HHHHHHHHHHTTSSS-HHHHHHHHHHHT.------EEEEE-TT--HHHHHHHHHCTSB.S...SEEE-TT--HHHHHHHHHHSTTS-HHHH CS
        YceG   1 vtipegsslseiaekLeeagviksaeafkllaklkk.kkalkaGeyelkkgmsleeilekLtkgkq.ekr.kvtipegltleqiaeklekkaelskeel 96 
                 v+i++g+ ++++a  L++agv+ksa+af  +a+ ++ +k++++G+y+++k+ms e++l +L + k+   + ++tipeg+t++++++ l++k+++  +e+
  KIR61198.1  84 VEIKQGALIADMAVALYDAGVVKSAKAFIEAAEANSrSKNIQPGTYKVRKQMSGEQALVMLLDLKNkI-TnQITIPEGTTAKRTYKLLSEKTKIPIKEF 181
                 79**************************777777665777******************9998886642.357************************999 PP

                 H................S-GGGG-TT-STTTT-S-SCEE--SSS--HHHHHHHHHHHHHHHT......HHH......HCT--HHHHHHHHHHHHHH--S CS
        YceG  97 l................kaskeeklkvekleGylfPdtYefkkgtsaeeilkrmlaefekvl......kraek..akasgltpyevltlASivekEaak 171
                 +                k+++ +  k +++eG+l+PdtYe++++++ae +l++m+++f +v+      +   +  +++ g +pye+l++AS+ ++Ea++
  KIR61198.1 182 EaaakdpeglgvpdwwfKRTDGKPAK-KSIEGFLYPDTYEIPPKATAEILLSTMVQNFLTVTgemkfaD---RvqEERGGISPYEALIVASLAQAEAGN 276
                 98777777777777775222222222.789****************************88778774432...3557999******************** PP

                 SS-HHHHHHHHHHHHHTT--...---HHHHHHH.T....-S-.....--CCHHC.---TT-TTTSSSS-SS-SS---HHHHHHHHS-------EEEE-. CS
        YceG 172 aeerpkvAsVflnRLkkgmr...LqsDpTviYg.g....kgr.....ltkkdle.tdspYNTYkikGLPpgPIanPgkaaieAalnpaktdylYFvakk 256
                 +++  kvA+V +nR   + +   L++D+Tv+Y  +    k +     +t ++l+ +++pYN +k +G+ p PI+nPgk+a+e a++p   ++lYFva +
  KIR61198.1 277 KDDLGKVARVAYNRVYGEFPcncLEMDVTVNYYlEltgqK-TktskdMTDAELDdKKNPYN-RKLRGMIPSPINNPGKQAMEGAMDPPPGKWLYFVAID 373
                 ****************9966677**********8776642.22222244446654778***.899***********************999*****985 PP

                 ...-EEEESSHHHHHCT-X CS
        YceG 257 .dgthaFaktleeHnknva 274
                  +g++aFa+t+ee  +n +
  KIR61198.1 374 rQGHSAFAETYEEQLRNQR 392
                 479*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2838.32
//
Query:       KIR61199.1  [L=279]
Description: shikimate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-22   78.3   0.0    7.8e-22   77.3   0.0    1.5  1  Shikimate_dh_N   Shikimate dehydrogenase substrate binding do
    1.1e-09   37.8   0.7    2.1e-09   37.0   0.7    1.5  1  SDH_C            Shikimate 5'-dehydrogenase C-terminal domain
     0.0028   18.2   0.1     0.0052   17.3   0.1    1.4  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
     0.0058   16.0   2.0      0.011   15.1   2.0    1.4  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.025   14.5   1.6      0.037   13.9   1.6    1.4  1  NAD_binding_10   NAD(P)H-binding
      0.074   13.3   0.0       0.13   12.5   0.0    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> Shikimate_dh_N  Shikimate dehydrogenase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   2.6e-25   7.8e-22       1      83 []       8      90 ..       8      90 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 2.6e-25
                    EEESS-TT-SHHHHHHHHHHHCTS.SEEEEEEE-SCCTHHHHHHHHHHTTESEEEE-TTSCCHHHGGSSEE-HHHHHHT--SEE CS
  Shikimate_dh_N  1 viGnpikhSlSPaihnaafkalgl.ngsyeafeveedelekaveelralglaGlnvTiPfKeaviplldelseeAkaigAvNti 83
                    v+G+pi+hSlSP+ihna ++a+gl  +sy+++e +e el ++v++l  +++aGl+vT+P+Kea ++l+ e+s+ A+a+gA+Nt+
      KIR61199.1  8 VVGKPISHSLSPVIHNAGYAAAGLaGWSYTTIECAEAELAAMVAGLG-PEWAGLSVTMPCKEATLTLAAEVSPVAAAMGAANTL 90
                    89**********************558*******************9.8**********************************7 PP

>> SDH_C  Shikimate 5'-dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.7   7.1e-13   2.1e-09       1      30 [.     238     267 ..     238     267 .. 0.98

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 7.1e-13
                 HHHHHHHHHHHHHHHHHS----HHHHHHHH CS
       SDH_C   1 GLgMLveQgaeqFelWTGrepPvevMreal 30 
                 GL+ Lv Q++ qFe++TG+++Pv++M +al
  KIR61199.1 238 GLDLLVAQAVGQFEHFTGIRAPVAAMAAAL 267
                 9**************************997 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.8e-06    0.0052       2      81 ..     123     204 ..     122     215 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.8e-06
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEES..SCCCHHHHHHHHC-EEECECHHHHHH..H-SEEEE-S-HHHHHHHHHHC CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansr..npekaeelaeelgvkvtavdneeaae..eadvvvlavkpedveevlsel 81 
                    + ++GaG  ++a +  +++ g     ++v+++r    ++++ +a++lg ++ + d ++aa   +advvv +v+  +++ +++++
     KIR61199.1 123 FTVLGAGGTARAALAAAARLG--SGTVTVVARRasAIDELRPAADALGLRLAGADWADAAGhtDADVVVSTVPKGVADPIAAQA 204
                    679******************..566665544411457888888999999***9*****9867899*******99999998876 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.0   3.6e-06     0.011      20      99 ..     114     192 ..      99     199 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.6e-06
                  TCEETCB---EEEEESTSHHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTTC.ECEEHCHHHHHHHHHHHH-SEEEE-- CS
  AlaDh_PNT_C  20 aGgvpgvepakvlviGgGvaGlqAiatakglga.kVtvlDvrparleqleslgak.fvevlksqeellaeavkeadvvigtv 99 
                  a+gvp    a+ +v+G+G    +A+a+a++lg  +Vtv+  r++++ +l+       +++  ++ +  a    +advv++tv
   KIR61199.1 114 AAGVP--PGARFTVLGAGGTARAALAAAARLGSgTVTVVARRASAIDELRPAADAlGLRLAGADWADAA-GHTDADVVVSTV 192
                  33555..6799*********************8579999999999999998554403333333333333.346789999987 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.6   1.3e-05     0.037       3      71 ..     128     195 ..     127     267 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.3e-05
                     TSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHT..T-SEEEES---T CS
  NAD_binding_10   3 tGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealk..gadaVvsalggg 71 
                      G+++r++++ +++ g  +vt+++R+++ ++el+  ++++++ + +   +d a+a    +ad+Vvs++ +g
      KIR61199.1 128 AGGTARAALAAAARLGSGTVTVVARRASAIDELR--PAADALGLRLA-GADWADAAGhtDADVVVSTVPKG 195
                     699*************88**************97..88888888887.66777777512666777777333 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.3e-05      0.13       3     126 ..     125     232 ..     123     236 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.3e-05
                      EE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHH.HHHHHHHT-E CS
  Sacchrp_dh_NADP   3 iiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppissldv.lkaCietgvh 95 
                      ++GaG++++a++   ar ++   ++tv+ r  +  ++l  +a    +  +  d ++ +       +++d+vv+ +p   + ++ ++a ++ g+ 
       KIR61199.1 125 VLGAGGTARAALAAAARLGSG--TVTVVARRASAIDELRPAADALGLRLAGADWADAAG-----HTDADVVVSTVPKGVADPIaAQARWRPGAV 211
                      8*****************987..9**********9998766655555555555555555.....567799999999985555515666788999 PP

                      EEESS-BCGCCSCHCCSHHHHHTHHHHHHCT CS
  Sacchrp_dh_NADP  96 yvdtsiskeertnyalreavlklkekakeag 126
                      y d+ +           ++   l++ a++ag
       KIR61199.1 212 YFDALY----------DPWPTPLAASAEAAG 232
                      999888..........666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2102.62
//
Query:       KIR61200.1  [L=623]
Description: glycerophosphodiester phosphodiesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-42  145.5   0.0    7.1e-42  143.9   0.0    1.8  1  GDPD      Glycerophosphoryl diester phosphodiesterase family
    8.7e-06   26.0   2.5      1e-05   25.8   0.2    2.5  3  GDPD_2    Glycerophosphoryl diester phosphodiesterase family
     0.0015   18.5   0.4       0.26   11.4   0.1    2.8  2  BiPBP_C   Penicillin-Binding Protein C-terminus Family
  ------ inclusion threshold ------
       0.02   15.6   1.6       0.02   15.6   1.6    2.6  3  Big_7     Bacterial Ig domain


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.9   0.0   1.6e-45   7.1e-42       1     258 [.     239     464 ..     239     465 .. 0.92

  Alignments for each domain:
  == domain 1  score: 143.9 bits;  conditional E-value: 1.6e-45
                 TTTTTTTSSTTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH.BGGGS-HHHHHTSTECCTTCCCCSCCCSSGCCB...BHHHHH CS
        GDPD   1 HRGasgnlpEnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagrldvkdltleelkrldkiakenkaqlsenrvrlefpfptleevl 99 
                 HRGas+  pEnTl + + A   Gad++E Dvq ++Dgvp vlHD ++drttd++g   ++ lt ++lk ld ++++   q+ + r+      ptl+e l
  KIR61200.1 239 HRGASAAAPENTLVAQEIARRSGADFVENDVQPSRDGVPFVLHDATVDRTTDGSG--AIRTLTAAQLKALD-AGSWFAPQYAGARL------PTLAEQL 328
                 *******************************************************..**************.99***********9......9****** PP

                 HHHHHCCSEEEEEEECCCCCCCHHHHHHTCHHHCCCCCSCHHTT..STTCSCEEEESTHHHHHHHHHTCTCTEEEEEEHHHHHHC-E.EECHCCCCCCC CS
        GDPD 100 kkpqnvglnieikipmlseakeeeelqivkeilksvdeilkkvlkkadkrkvifssfnpdilkllrekqpklpllflteggteaeadssleraakfaka 198
                 +  +  g n+  +i+  ++  e            +v  i++     +   +v+++sf++d+l+ +re++p+lp+ +l +g ++ + +      a++++ 
  KIR61200.1 329 ADLRTRGGNLLLEIKGAHTRDEVAR---------IVEVIRA----EKMTTRVFVQSFEVDALRFTRELAPELPTGLLRSGLDADPVA-----MARELGV 409
                 9988888888888887666555555.........5555553....2445789***************************99999998.....8999999 PP

                 TCCCCHHCCCHCCCEB.CHHHHHHHTT-EEEEBSB-THSHHHHHHHHCCC-SEEEES-HH CS
        GDPD 199 dallgevsavaeglgdpdlVkraksrglvvhvytvnnedeeemkrlleagvdgvitDfpd 258
                  a+ +   a+  +   p+++ +++++g++v+++tv+ +  +++++l+++g dg+it++p+
  KIR61200.1 410 TAYNPTGTALLAR---PSVIADLHAAGVAVMAWTVDSP--AQWQQLERIGTDGIITNRPA 464
                 9999999999888...9*********************..******************97 PP

>> GDPD_2  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.2   1.4e+04       3      10 ..     148     156 ..     147     168 .. 0.79
   2 ?   -3.9   0.0         4   1.8e+04      12      20 ..     294     302 ..     285     303 .. 0.72
   3 !   25.8   0.2   2.3e-09     1e-05       2      30 .]     436     464 ..     435     464 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.2
      GDPD_2   3 rfW.ttdde 10 
                  +W +t+++
  KIR61200.1 148 NAWnVTNTG 156
                 689788985 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4
      GDPD_2  12 vwrelvgaG 20 
                 ++r+l +a 
  KIR61200.1 294 AIRTLTAAQ 302
                 799998885 PP

  == domain 3  score: 25.8 bits;  conditional E-value: 2.3e-09
      GDPD_2   2 vrfWttddeavwrelvgaGVdgInTDdld 30 
                 v++Wt+d +a+w++l + G dgI+T++++
  KIR61200.1 436 VMAWTVDSPAQWQQLERIGTDGIITNRPA 464
                 9**************************96 PP

>> BiPBP_C  Penicillin-Binding Protein C-terminus Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0095        43      40      57 ..     173     191 ..     159     204 .. 0.72
   2 !   11.4   0.1   5.7e-05      0.26       8      78 ..     478     541 ..     471     548 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0095
     BiPBP_C  40 rggeaplrWlldgepl.ae 57 
                 + + ++ rW+ldg+ l ++
  KIR61200.1 173 EVHGNQARWFLDGRQLlRT 191
                 3334488*******99444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5.7e-05
     BiPBP_C   8 aasplrIafPadGailaldpdipkrqrlqlkarggeaplrWlldgeplaetkrgrelawqp.epGrhrLtvv 78 
                 a +++ Ia+PadG +l++++    r  l++ a  + ++++  ldg+ +     g++l ++    G hrL++v
  KIR61200.1 478 AVPTVSIAAPADGVELDRAQ----RPVLTVPATDA-DTVTVTLDGAAV---PVGKPLDLTGlAAGAHRLRAV 541
                 567899***********986....66666666666.789********9...999******99*******998 PP

>> Big_7  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.8   1.3e+04       3      17 ..      28      41 ..      27      46 .. 0.73
   2 ?   -3.4   0.1       3.8   1.7e+04      43      52 ..     149     160 ..     119     162 .. 0.59
   3 ?   15.6   1.6   4.5e-06      0.02       1      44 [.     480     543 ..     480     566 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.8
                EEEEE--TT--EBTS CS
       Big_7  3 vtitsPangatvsgg 17
                v+i++Pa+ a+ + g
  KIR61200.1 28 VQISAPAPAAAKP-G 41
                89999*9988765.4 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.8
                 ...EEEE-SSSE CS
       Big_7  43 g..lgtdtsapy 52 
                 +  ++++ sapy
  KIR61200.1 149 AwnVTNTGSAPY 160
                 123555555555 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 4.5e-06
                 XEEEEEE--TT--EB.TSEEEEEEEEE-SS-EEEEEEEETTEE.......................E CS
       Big_7   1 PtvtitsPangatvs.ggtvtisasAsddggvskVefyvdgtl.g.....................l 44 
                 Ptv+i +Pa+g +++ ++   +++ A+d+   ++V++ +dg                         +
  KIR61200.1 480 PTVSIAAPADGVELDrAQRPVLTVPATDA---DTVTVTLDGAAvPvgkpldltglaagahrlravaS 543
                 9****************************...88999999886334455555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4427.94
//
Query:       KIR61201.1  [L=246]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00019   21.7   0.6    0.00019   21.7   0.6    1.8  2  HTH_31          Helix-turn-helix domain
    0.00027   20.9   0.1     0.0019   18.2   0.0    2.3  3  HTH_35          Winged helix-turn-helix DNA-binding
    0.00074   19.6   0.0     0.0023   18.1   0.0    1.9  2  HTH_17          Helix-turn-helix domain
    0.00077   18.8   0.1     0.0022   17.3   0.1    1.8  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
    0.00085   19.0   0.0     0.0017   18.0   0.0    1.5  1  Sigma70_r4_2    Sigma-70, region 4
      0.004   16.9   0.1      0.012   15.4   0.1    1.7  1  HTH_23          Homeodomain-like domain
     0.0041   16.9   0.0     0.0081   16.0   0.0    1.5  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
     0.0059   16.3   0.0      0.016   15.0   0.0    1.7  1  MerR            MerR family regulatory protein
     0.0062   16.6   0.0      0.011   15.8   0.0    1.4  1  HTH_3           Helix-turn-helix
     0.0072   16.1   0.2      0.027   14.3   0.0    2.0  2  HTH_38          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.031   14.2   0.0       0.06   13.3   0.0    1.4  1  HTH_36          Helix-turn-helix domain
      0.059   13.2   0.1       0.18   11.7   0.1    1.8  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
      0.064   13.3   0.0       0.11   12.6   0.0    1.4  1  Phage_CI_repr   Bacteriophage CI repressor helix-turn-helix d
       0.19   12.2   0.0        1.6    9.3   0.0    2.1  2  HTH_26          Cro/C1-type HTH DNA-binding domain
        0.2   11.8   0.0       0.33   11.1   0.0    1.3  1  MerR_1          MerR HTH family regulatory protein


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.6   1.6e-07   0.00019      11      58 ..      12      58 ..       3      63 .. 0.89
   2 ?   -2.8   0.1       6.9   8.2e+03      20      33 ..     160     173 ..     148     185 .. 0.62

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.6e-07
      HTH_31 11 eraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldp 58
                 +aGLs +++Aer+ v + t+ r+ +  r +p p+   ++a++lg d+
  KIR61201.1 12 VAAGLSFADLAERCDVDAKTVQRWVSRGR-VPHPRSRVRVAEVLGEDV 58
                589***********************999.7************99775 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.9
      HTH_31  20 vAerlgvsestlsr 33 
                 +  r+ ++++ ls+
  KIR61201.1 160 LSTRIAMTRAELSK 173
                 45555555555555 PP

>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.6e-06    0.0019       7      61 ..       7      64 ..       3      71 .. 0.92
   2 ?   -2.6   0.0         5     6e+03      23      39 ..      84     100 ..      82     105 .. 0.77
   3 ?   -1.2   0.0       1.7   2.1e+03      31      52 ..     184     205 ..     166     207 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.6e-06
      HTH_35  7 IiAaLrkrgttLaalsreaglssstlsnaltr...pwpkgEalIAeaLgvppeeiwPs 61
                 +Aa+   g + a+l+++ +   +t+++ ++r   p p++  ++Ae+Lg ++ ++wP+
  KIR61201.1  7 LKAAIVAAGLSFADLAERCDVDAKTVQRWVSRgrvPHPRSRVRVAEVLGEDVGVLWPE 64
                799***************************99555699*******************7 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5
      HTH_35  23 reaglssstlsnaltrp 39 
                 r+a+l +s ++ a+ r 
  KIR61201.1  84 RRADLPQSVFRDAIGRA 100
                 67888888888888776 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.7
      HTH_35  31 tlsnaltrpwpkgEalIAeaLg 52 
                 t + a++  ++  Ea++A  +g
  KIR61201.1 184 TRHLAMSVWVFDEEAIVATHIG 205
                 4555566667788999998887 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.9e-06    0.0023       2      38 ..      16      50 ..      16      54 .. 0.80
   2 ?   -2.8   0.0       6.2   7.4e+03      32      44 ..     191     200 ..     183     201 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.9e-06
      HTH_17  2 ltveEaAelLgvsrstvyrlirrgelpaak.iGrrwri 38
                l+ +++Ae  +v  +tv+r+++rg+ p+ + +   +r+
  KIR61201.1 16 LSFADLAERCDVDAKTVQRWVSRGRVPHPRsR---VRV 50
                67899*********************554422...554 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.2
      HTH_17  32 iGrrwriprsdle 44 
                 +   w ++++++ 
  KIR61201.1 191 V---WVFDEEAIV 200
                 5...999999986 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.9e-06    0.0022      17      50 ..       8      38 ..       5      39 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.9e-06
  HTH_Tnp_ISL3 17 eayilelllesrsvkavArqlgvSwtTVwrildr 50
                  +a+i+++     s+++ A++++v+++TV+r++ r
    KIR61201.1  8 KAAIVAA--GL-SFADLAERCDVDAKTVQRWVSR 38
                  5666666..56.*******************976 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.4e-06    0.0017      25      51 ..      14      40 ..      10      41 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.4e-06
                  S---HHHHHHHHT--HHHHHHHHHHHH CS
  Sigma70_r4_2 25 eglsykEIAellgisegtVksrlsRAr 51
                   gls ++ Ae++++  +tV++++sR+r
    KIR61201.1 14 AGLSFADLAERCDVDAKTVQRWVSRGR 40
                  59************************9 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   9.6e-06     0.012      14      40 ..      10      38 ..       5      40 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.6e-06
      HTH_23 14 lae..GlsvreIAreLgvsrrTvyrwlkr 40
                + +  Gls ++ A++++v   Tv+rw++r
  KIR61201.1 10 AIVaaGLSFADLAERCDVDAKTVQRWVSR 38
                44456**********************98 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.8e-06    0.0081       2      37 ..       8      43 ..       7      55 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.8e-06
  YdaS_antitoxin  2 kkaieivG.gqkaLAealgvsqqaVsqWlkgkkqvpa 37
                    k+ai ++G + + LAe+++v  ++V++W++ +++vp 
      KIR61201.1  8 KAAIVAAGlSFADLAERCDVDAKTVQRWVS-RGRVPH 43
                    5666666656689****************7.455553 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.3e-05     0.016       4      29 ..      20      45 ..      18      48 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
                HHHHHHTTTHHHHHHHHHTTSSTSEE CS
        MerR  4 evAeltGvsprtLRyYEreGLipppe 29
                ++Ae+++v ++t+ ++ ++G +p+p+
  KIR61201.1 20 DLAERCDVDAKTVQRWVSRGRVPHPR 45
                79********************7775 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.3e-06     0.011       1      52 [.       7      58 ..       7      61 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.3e-06
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsl 52
                lk++  ++gls ++LAe+++v   t++r+ +  r P ++  +++a++Lg + 
  KIR61201.1  7 LKAAIVAAGLSFADLAERCDVDAKTVQRWVSRGRVPHPRSRVRVAEVLGEDV 58
                7888899*******************************99999999999776 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.2e-05     0.027      18      44 .]      13      39 ..       9      39 .. 0.92
   2 ?   -2.4   0.5       3.6   4.3e+03       9      14 ..     149     154 ..     148     155 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.2e-05
      HTH_38 18 aeGlslreIArrLgrspsTIsRElkRn 44
                a+Gls+++ A r++++  T++R + R+
  KIR61201.1 13 AAGLSFADLAERCDVDAKTVQRWVSRG 39
                89********************99986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.6
      HTH_38   9 eReeIe 14 
                 eRe+Ie
  KIR61201.1 149 ERERIE 154
                 9****8 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     5e-05      0.06      27      46 ..      17      36 ..      11      38 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5e-05
      HTH_36 27 sqetlakrlglsknTvsrai 46
                s+++la+r+ ++ +Tv+r++
  KIR61201.1 17 SFADLAERCDVDAKTVQRWV 36
                89*****************7 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00015      0.18      18      36 ..      16      34 ..       6      38 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
  HTH_AsnC-type 18 isyaeLAervGlSestvlr 36
                   +s+a+LAer+ +++ tv+r
     KIR61201.1 16 LSFADLAERCDVDAKTVQR 34
                   79***************99 PP

>> Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.3e-05      0.11       7      40 ..      11      43 ..       5      61 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.3e-05
                   HHHHT-SSCHHHHCCTT--HHHHHHHHHSSS--H CS
  Phage_CI_repr  7 msaygvkmqkeLAdlLgiakssvstwvrRdffPg 40
                   + a g +   +LA++ ++  ++v  wv+R+++P+
     KIR61201.1 11 IVAAGLSFA-DLAERCDVDAKTVQRWVSRGRVPH 43
                   566666655.***********************6 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0013       1.6       4      33 ..       9      38 ..       6      49 .. 0.84
   2 ?    0.3   0.0       0.8   9.6e+02      16      44 ..     160     188 ..     150     189 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0013
      HTH_26  4 elmadrgitkseLargtgisaatlsrlvkg 33
                 ++ + g++ ++La++++++a t++r+v+ 
  KIR61201.1  9 AAIVAAGLSFADLAERCDVDAKTVQRWVSR 38
                5666788999*****************984 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.8
      HTH_26  16 LargtgisaatlsrlvkgkpervsldtLd 44 
                 L+ ++ +++a ls+  +  p+r s+ +L+
  KIR61201.1 160 LSTRIAMTRAELSKVGTVIPVRFSTRHLA 188
                 77889999999999999999999999886 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00028      0.33       3      32 ..      18      46 ..      16      52 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
                HHHHHHHHTS-HHHHHHHHHHTT-S-EE-T CS
      MerR_1  3 igevakilgvtthtlrywekegllkpkrte 32
                  ++a+++ v ++t++ w  +g ++ +r +
  KIR61201.1 18 FADLAERCDVDAKTVQRWVSRGRVPHPR-S 46
                579*********************9999.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1909.00
//
Query:       KIR61202.1  [L=402]
Description: hypothetical protein TK50_26050 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-13   50.8   2.0    1.6e-13   50.8   2.0    4.8  4  HTH_31    Helix-turn-helix domain
    9.4e-05   22.4   0.0    0.00075   19.5   0.0    2.3  2  HTH_3     Helix-turn-helix
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.025   14.6   0.0    1.5  1  HTH_19    Helix-turn-helix domain
      0.099   13.1   0.0       0.39   11.2   0.0    2.1  2  HTH_26    Cro/C1-type HTH DNA-binding domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   2.0   3.6e-17   1.6e-13       2      60 ..      14      72 ..      13      75 .. 0.95
   2 ?   -2.8   0.0       1.9   8.7e+03      44      58 ..     130     144 ..     125     148 .. 0.66
   3 ?   -5.0   8.7         4   1.8e+04       2      14 ..     205     224 ..     204     275 .. 0.72
   4 ?    0.7   5.3      0.15   6.6e+02      20      58 ..     351     401 ..     332     402 .] 0.62

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 3.6e-17
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpae 60
                +G++ ++lR+r+G+sq+  A+r+g s+s++ ++E+G r++ +++v+e +a alg+ pa 
  KIR61202.1 14 IGRRMAELRARRGMSQQVFADRIGRSKSWVDKVERGVRTLDRLSVIETVAGALGVAPAV 72
                79*****************************************************9986 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.9
      HTH_31  44 pavlealaralgldp 58 
                 p+vl+ l ++l +++
  KIR61202.1 130 PQVLRTLPDLLAASR 144
                 677777777777765 PP

  == domain 3  score: -5.0 bits;  conditional E-value: 4
      HTH_31   2 LGalLralRera.......G 14 
                 L++ LralR+ +        
  KIR61202.1 205 LAQALRALRRGRlakaaalS 224
                 89999999976634444330 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.15
      HTH_31  20 vAerlgvsestlsrlEqGrrgrp.............spavlealaralgldp 58 
                 +A+r+ +++++l   E+ +r                + a++++la +lgl++
  KIR61202.1 351 AAGRALLTADRLAPAETRARS-AaratlttilrtgpTSADVTRLAAVLGLTR 401
                 555555555555555554443.323444444444448899999999999975 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.7e-07   0.00075       2      53 ..      19      71 ..      18      73 .. 0.87
   2 ?   -0.1   0.0      0.22   9.9e+02      39      51 ..     388     400 ..     382     402 .] 0.54

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.7e-07
                HHHHHHTTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  2 kelRkqlglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvsld 53
                +elR  +g+sq+ +A+++G s+s + + E+G ++  +l++++ +a aLgv ++
  KIR61202.1 19 AELRARRGMSQQVFADRIGRSKSWVDKVERGvRTLDRLSVIETVAGALGVAPA 71
                699****************************6666678888888888888765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.22
                 HHHHHHHHHHTSE CS
       HTH_3  39 etlkklakaLgvs 51 
                   + +la +Lg++
  KIR61202.1 388 ADVTRLAAVLGLT 400
                 5555555555544 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   5.7e-06     0.025       1      58 [.      15      72 ..      15      78 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.7e-06
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aelllkiaealgidley 58
                G+r  e+R  +g++q+  a+r+g s+s   + E g + +++  +++  +a alg+ +  
  KIR61202.1 15 GRRMAELRARRGMSQQVFADRIGRSKSWVDKVERGVR-TLDrLSVIETVAGALGVAPAV 72
                89*********************************99.888667778888888776655 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.6e-05      0.39       2      61 ..      18      77 ..      17      79 .. 0.88
   2 ?   -3.1   0.0       2.5   1.1e+04      24      45 ..     374     395 ..     367     399 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.6e-05
      HTH_26  2 LrelmadrgitkseLargtgisaatlsrlvkgkperv.sldtLdkiCdaLgctpgDLleye 61
                + el a rg++++ +a ++g s++ +++   g ++++ +l+++++++ aLg+ p+ Ll  +
  KIR61202.1 18 MAELRARRGMSQQVFADRIGRSKSWVDKVERG-VRTLdRLSVIETVAGALGVAPAVLLADK 77
                67899***************************.5666257**************9888765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.5
      HTH_26  24 aatlsrlvkgkpervsldtLdk 45 
                 +atl++++   p++ + ++L++
  KIR61202.1 374 RATLTTILRTGPTSADVTRLAA 395
                 6777777777677777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2598.53
//
Query:       KIR61203.1  [L=392]
Description: chorismate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.3e-117  390.9   0.8   3.7e-117  390.7   0.8    1.0  1  Chorismate_synt  Chorismate synthase


Domain annotation for each model (and alignments):
>> Chorismate_synt  Chorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  390.7   0.8  2.1e-121  3.7e-117       1     326 [.       2     366 ..       2     367 .. 0.96

  Alignments for each domain:
  == domain 1  score: 390.7 bits;  conditional E-value: 2.1e-121
                      SEEEEE-SCCSSEEEEEEE---BT-B--HHHHHHHHHHHTCTSSSSSSHHHCS-EEEEESSEETTEE-SS-EEEEEE-TTS-..SSSSSTS... CS
  Chorismate_synt   1 lrvttfGeShgkalgavidgvpagleldeediqkeLdrRrpgqsklttqrkEkDeveilsGvfegktlGtpiallieNkdqrskdyeeike... 91 
                      lr++t+GeShg+al+a+++gvpag+e+++ +i  eL+rRr g  + +++  E+D vei++G+ +g+tlG+p+a+ + N+++   +++++++   
       KIR61203.1   2 LRWLTAGESHGPALVAMLEGVPAGIEVTTGEIAGELARRRLGYGRGARMAFEQDVVEIIGGLRHGVTLGSPVAIRVGNSEWP--KWQTVMAadp 93 
                      799***************************************889*****************98******************..********** PP

                      ................BE-TTSTCHHHHHHC-S.STHCC.CCCTHHCHHHHHHHHHHHHHHHHT.TTEEEEEEEEEETTE.............C CS
  Chorismate_synt  92 ................vpRpgHADltyalkYgirdlrgg.grsSaReTaarvaaGavakklLke.lgieivayvssigei.............e 154
                                      +pRpgHADl++++kYg++d+r + +r+SaReTaarva+G+vak+l+k+ lgieiv++v+++g +             e
       KIR61203.1  94 vdpdelarqarnapltRPRPGHADLAGMQKYGHTDARPIlERASARETAARVAVGTVAKALVKQaLGIEIVSHVVELGPVaakpglrptpedaE 187
                      ****************************************************************78************7778888888887643 PP

                      HHHHHTT-BS-CCCHHHHHHHHHHHHHTT--B-EEEEEEEES--TT-SBTTT..B-HHHHHHHHHHTSTTEEEEEETTGGGGGGSBHHHHS--E CS
  Chorismate_synt 155 keaenpvrcpdeeaaeemeeaieeakkegdslGgvvevvvkgvpaGlGepvf..dkldakLakalmsipAvkgveiGsGfeaaelkGseanDei 246
                      +  ++p+rc+d++a+++m +++++akk+ d+lGgvvev++ gvp+GlG++v+  +klda+La almsi+A+kgveiG+G  +a+ +Gsea+Dei
       KIR61203.1 188 RIDADPLRCLDSDASARMVAEVDAAKKAADTLGGVVEVLAYGVPPGLGSHVQwdRKLDARLATALMSIQAIKGVEIGDGWLQARSRGSEAHDEI 281
                      33566************************************************9**************************************** PP

                      E......EESS-TTTTEETTEEBSS-EEEEEEE--SS--SSEEEEEBTTS-E-EEEE--S-S-S-THHHHHHHHHHHHHHHHHHHH CS
  Chorismate_synt 247 v......lrktnnaGGieGGisnGepivvrvavKpipsiakeqktvdletkeevelevkgrhDpcvvpravvvveamvalvladal 326
                      v       r t++aGG+eGGi++Gep+ v++a+Kpi+s++++++tvd++t+e++++  + r+D+c+vp+a+vv+eamvalvla+a+
       KIR61203.1 282 VptatgvRRVTDRAGGLEGGITTGEPLRVKAAMKPISSLNRALATVDVTTREPATAINQ-RSDVCAVPAAAVVAEAMVALVLAEAA 366
                      *888775559******************************************7777777.***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2895.83
//
Query:       KIR61204.1  [L=198]
Description: hypothetical protein TK50_26065 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1477.61
//
Query:       KIR61205.1  [L=269]
Description: cytochrome C oxidase assembly protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-52  178.3  26.4    2.1e-52  177.9  26.4    1.1  1  Caa3_CtaG  Cytochrome c oxidase caa3 assembly factor (Caa3_Ct
  ------ inclusion threshold ------
       0.25   11.7  14.0       0.25   11.7   2.5    3.4  3  DUF3040    Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> Caa3_CtaG  Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.9  26.4   2.3e-56   2.1e-52       1     231 [.      32     252 ..      32     254 .. 0.95

  Alignments for each domain:
  == domain 1  score: 177.9 bits;  conditional E-value: 2.3e-56
   Caa3_CtaG   1 alYllgvrrlrrr.gd.wpvgrtvaFllGllllalalgspldvyghalfsaHmvqhllllmvaPpllvlGaPvtlllralpral.rellrllrsrvlrv 96 
                 ++Yl+++ r r   g+ wp +rt+aF +G  lla+ l+ p +      f+aH++qhll++m+aP+ lvlGaPvtl+lr ++r+  r+l+rllr+++l +
  KIR61205.1  32 WVYLAAALRQRGPdGGgWPHRRTAAFGAGAGLLAVGLALPAGG-----FAAHAWQHLLVGMLAPLGLVLGAPVTLALRSIDRRRgRALVRLLRRPALAA 125
                 68999998888776445***********************976.....779******************************999666************ PP

   Caa3_CtaG  97 lthPlvalllfvallyllylpplfdaalrsealhalmhlhfllaGllfwwpvlgpdpeprrlspllrllylfaamvlhaflgallmfastvlypayyla 195
                 l+hP++ l+l +++ly+lyl+pl++a+l+++alh+l+hlhfll+Gllf+w+v+gpdp+p+r+  ++rl++l +a+++ha l+ ll+    v +p     
  KIR61205.1 126 LAHPVTGLALTTGGLYVLYLTPLYRATLAHPALHHLVHLHFLLSGLLFTWSVAGPDPGPHRPRVPARLVVLGVAVAAHATLAQLLYAGLAVDVP----- 219
                 **************************************************************************************99888887..... PP

   Caa3_CtaG 196 swgsplaDqqlGGlimwvlgelvyllvllalfvrwl 231
                     p ++ ++G+ +m+++g+l++++++lal+++w+
  KIR61205.1 220 ---APPEQLRAGATVMYYGGDLAEIALALALLATWR 252
                 ...689*****************************6 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.5   2.7e-05      0.25      25      82 ..      35      94 ..      34      96 .. 0.75
   2 ?    3.7   0.4    0.0084        76      35      64 ..     112     142 ..     100     158 .. 0.73
   3 ?    3.3   0.2     0.011        99      33      66 ..     181     217 ..     172     247 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.7e-05
     DUF3040 25 laaalrggaar...arrrslrrlavlavllfva.GllllvlGvaaaavvlgvvGfvvmlagv 82
                laaalr++ ++   ++  ++r++a+ a ++++a Gl+l  +G+aa+a+   +vG+++ l++v
  KIR61205.1 35 LAAALRQRGPDgggWP--HRRTAAFGAGAGLLAvGLALPAGGFAAHAWQHLLVGMLAPLGLV 94
                7999999999963333..3344555556666666**99999999999999999999988876 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0084
     DUF3040  35 rarrrslrrlavlavllfvaGllllvlG.va 64 
                 ra  r lrr a++a++  v+Gl+l ++G  +
  KIR61205.1 112 RALVRLLRRPALAALAHPVTGLALTTGGlYV 142
                 34455677778899999999***99999444 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.011
     DUF3040  33 aar.arrrslrrlavlavllfvaGlll..lvlGvaaa 66 
                 +++  r r + rl+vl+v++++ + l+  l +G+a++
  KIR61205.1 181 DPGpHRPRVPARLVVLGVAVAAHATLAqlLYAGLAVD 217
                 4553344444555666666655543322244555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      153  (0.00853366); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2146.77
//
Query:       KIR61206.1  [L=173]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-50  168.6  13.0    9.3e-50  168.4  13.0    1.0  1  DUF2243    Predicted membrane protein (DUF2243)


Domain annotation for each model (and alignments):
>> DUF2243  Predicted membrane protein (DUF2243)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.4  13.0   5.2e-54   9.3e-50       2     139 ..      15     162 ..      14     163 .. 0.95

  Alignments for each domain:
  == domain 1  score: 168.4 bits;  conditional E-value: 5.2e-54
     DUF2243   2 gillGvglggfvDgivlHqlLqwHhllss.........vlpaktvstlelnllsDGlfhaatlvlvvaglvllararrre.evalssrallgavllGaG 90 
                 +++lGvglggf DgivlHq+LqwHh+ls           +p +tv +le+n+l+DG+fh++t+v+v++gl+ll+ +++ +    ++s +l+g++l+G+G
  KIR61206.1  15 ATILGVGLGGFADGIVLHQVLQWHHMLSGtgsdnvgvkAYPVDTVPGLEMNTLWDGIFHVVTWVAVLTGLALLYARVTGSrGLLWRSPVLWGWALVGWG 113
                 579*************************999*****999*********************************9987776537899************** PP

     DUF2243  91 lFnlvdgvvdHkllgiHqvregeelllydlvflalgvlllvvGllllrr 139
                 lFnlv+g+vdH+llgiH+vreg+  +++dl+flalg++l++vG+l++rr
  KIR61206.1 114 LFNLVEGIVDHHLLGIHHVREGAYRTWWDLGFLALGAALVAVGWLVQRR 162
                 **********************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1299.33
//
Query:       KIR61207.1  [L=358]
Description: 3-dehydroquinate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-88  295.1   0.0    4.4e-88  294.8   0.0    1.1  1  DHQ_synthase  3-dehydroquinate synthase
    2.8e-08   33.8   5.9    4.6e-07   29.8   5.9    2.3  1  Fe-ADH_2      Iron-containing alcohol dehydrogenase
    4.6e-05   22.4   2.1    4.6e-05   22.4   2.1    2.6  3  Fe-ADH        Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.8   0.0   7.4e-92   4.4e-88       2     261 ..      66     322 ..      65     323 .. 0.98

  Alignments for each domain:
  == domain 1  score: 294.8 bits;  conditional E-value: 7.4e-92
                   EEE-SSGGGCCHHHHHHHHHHHHHTT--TT-EEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE---SEE CS
  DHQ_synthase   2 lvvpdgeksKsletlekildalleakleRksllialGGGvvgDlaGfvAatylRGvrfvqvPttllaqvDssvGgKtainlplgKNliGafaqPkav 98 
                   + vpd+e+ K +e ++ ++d l ea+++R+++++ +GGG+v+DlaGfvAa++lRGvr+v v t+ll++vD++vGgKt+in++ gKNl+G f+ P  v
    KIR61207.1  66 VEVPDAEAGKAIEVAAACWDRLGEAGFTRTDAVVGVGGGAVTDLAGFVAACWLRGVRWVPVATSLLGMVDAAVGGKTGINTAAGKNLVGGFHPPVGV 162
                   579********************************************************************************************** PP

                   EEEGGGGGGS-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHCCTTTTGGGGGGTTHHHHHHHHHHHTT CS
  DHQ_synthase  99 lidlevLktLperelraGlaEviKyalikdeelfelleenaeallkeeeeealeeliarsievkaevveeDekekglralLnlGHtigHaiEallgy 195
                   l+dl+vL++Lp+ +l+aGlaEv+K+++i+d  +++l+e++++a ++  ++ +++eli+r+i+vka+vv+ D +e+g+r++Ln+GHt++HaiE++ gy
    KIR61207.1 163 LCDLAVLDSLPPADLAAGLAEVVKCGFIADPVILDLVERDRAAATD-PTSPVVRELIERAIRVKADVVSGDLRESGVREVLNYGHTLAHAIEKVEGY 258
                   ***************************************9999977.599*********************************************** PP

                   TTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTTT.-HHHHHHHHTTCTTX CS
  DHQ_synthase 196 ekllHGeaVaiGmvlaaelseklgllkkeeverllkllkklglpvslkelleveellealkkDkkv 261
                    +++HG+aV++G+v+a el++ +g l++e+++r++++l++lglp++++ + +  +ll+a++ Dkk+
    KIR61207.1 259 -RWRHGHAVSVGLVYAGELARLAGRLDPETTARHRTVLTALGLPTAYRAD-AWPQLLAAMRVDKKS 322
                   .*************************************************.**************7 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   5.9   7.6e-11   4.6e-07      59     162 ..      75     185 ..      32     267 .. 0.66

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 7.6e-11
    Fe-ADH_2  59 adleeveklveal...reketdlvvavGgGtiiDiakyvsaklnvpyvsvpTaaSvDGf....aspgaslvvdgkkrtvakaaaPlaviaDldvlaeAP 150
                 + +e +++  ++l     ++td+vv+vGgG + D+a +v+a   + +  vp a S  G           + +   k  v   + P++v+ Dl vl   P
  KIR61207.1  75 KAIEVAAACWDRLgeaGFTRTDAVVGVGGGAVTDLAGFVAACWLRGVRWVPVATSLLGMvdaaVGGKTGINTAAGKNLVGGFHPPVGVLCDLAVLDSLP 173
                 34555555555552224599********************976666666666666555511004455667777667667899***************** PP

    Fe-ADH_2 151 rrllasGvGDll 162
                  + la+G+++++
  KIR61207.1 174 PADLAAGLAEVV 185
                 *********997 PP

>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   2.1   7.7e-09   4.6e-05       2     105 ..      15     118 ..      14     186 .. 0.80
   2 ?   -2.8   0.0      0.36   2.2e+03      63      85 ..     207     229 ..     198     231 .. 0.85
   3 ?    0.9   0.1     0.027   1.6e+02     251     303 ..     245     301 ..     233     325 .. 0.61

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 7.7e-09
                 SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.E..EE-S---HHHHHHHHTTS-TT....--EEEEEESHHHHH CS
      Fe-ADH   2 trivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfd..gvepnptleeveeaaalaree...gadvviavGGGsviD 95 
                   ++ g++ l++l++ll  +  +r+ +++ + +    gl+d + + l++ag +  +++  + e    +e  +++ +++ e+   + d+v++vGGG v D
  KIR61207.1  15 YDVLVGRDLLDSLPTLLPGA--TRVAVLHAPPLK---GLADAIGARLAAAGAAPLLVEvpDAEAGKAIEVAAACWDRLGEAgftRTDAVVGVGGGAVTD 108
                 57899************887..5*********88...9*********999999875440044555556666666666666644457************* PP

                 HHHHHHHHTT CS
      Fe-ADH  96 tAKaiallla 105
                 +A  +a++  
  KIR61207.1 109 LAGFVAACWL 118
                 ******9876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.36
                 S---HHHHHHHHTTS-TT.--EE CS
      Fe-ADH  63 pnptleeveeaaalareegadvv 85 
                  +pt   v+e++++a   +advv
  KIR61207.1 207 TDPTSPVVRELIERAIRVKADVV 229
                 68999999999999999999987 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.027
                 ---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH................HHHHHHT.... CS
      Fe-ADH 251 glgavHalahalgalfgiphglanaillpavlrfna......eaaperlaqlaralgge 303
                 g +++Ha++   g      hg a+++ l ++ +  +      +++ +r++ +  alg  
  KIR61207.1 245 GHTLAHAIEKVEGY--RWRHGHAVSVGLVYAGELARlagrldPETTARHRTVLTALGLP 301
                 44555555555554..5668888888777776444445555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2388.52
//
Query:       KIR61208.1  [L=185]
Description: elongation factor P [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-28   96.6   0.4    3.3e-27   94.3   0.4    2.1  2  EFP_N           Elongation factor P (EF-P) KOW-like domain
    2.1e-26   91.4   2.1    4.7e-26   90.3   0.4    2.4  3  Elong-fact-P_C  Elongation factor P, C-terminal
      1e-21   76.7   0.0    2.1e-21   75.7   0.0    1.6  2  EFP             Elongation factor P (EF-P) OB domain


Domain annotation for each model (and alignments):
>> EFP_N  Elongation factor P (EF-P) KOW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.4   5.5e-31   3.3e-27       1      58 []       3      60 ..       3      60 .. 0.98
   2 ?   -1.2   0.0      0.36   2.1e+03      19      29 ..     129     139 ..     127     143 .. 0.85

  Alignments for each domain:
  == domain 1  score: 94.3 bits;  conditional E-value: 5.5e-31
                EGGG--TT-EEEETTEEEEEEEEEEEEETTS--EEEEEEEETTTS-EEEEEEETT-EE CS
       EFP_N  1 saselkkGlvieidgklyvVlefehvkpGkGqafvrvklknlrtGakvektfkagdkv 58
                ++++lk+Glv+++dg+l+ V+ef+hvkpGkG+afvr+ lkn+++G++v+ktf+ag kv
  KIR61208.1  3 TTNDLKNGLVLNLDGELWAVVEFQHVKPGKGGAFVRTTLKNVLSGKVVDKTFNAGTKV 60
                69*****************************************************997 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.36
                 EEEEEEEEEET CS
       EFP_N  19 vVlefehvkpG 29 
                 vVle+ ++ pG
  KIR61208.1 129 VVLEITYTEPG 139
                 799**999999 PP

>> Elong-fact-P_C  Elongation factor P, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.3   1.8e+03      45      53 ..      64      72 ..      54      73 .. 0.57
   2 ?   -2.9   0.0         1   6.1e+03      34      39 ..     119     124 ..     118     124 .. 0.88
   3 !   90.3   0.4   7.8e-30   4.7e-26       1      56 []     129     184 ..     129     184 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.3
                    EEETTTTEE CS
  Elong-fact-P_C 45 kvdTrtgeY 53
                     vd rt +Y
      KIR61208.1 64 TVDKRTMQY 72
                    467777777 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1
                     EETT-- CS
  Elong-fact-P_C  34 VPlFIn 39 
                     VPl+I+
      KIR61208.1 119 VPLYIE 124
                     9***97 PP

  == domain 3  score: 90.3 bits;  conditional E-value: 7.8e-30
                     EEEEEEE--SSS--SSSSTTEEEEEETTS-EEEEETT--TT-EEEEETTTTEEEEE CS
  Elong-fact-P_C   1 VeleVvetepgvkGdtasggtKpatletGaevqVPlFIneGdkIkvdTrtgeYvsR 56 
                     V+le+++tepg++Gd ++gg Kpat+etGa+vqVPlFI +G+kIkvdTr+g Y++R
      KIR61208.1 129 VVLEITYTEPGLQGDRSTGGNKPATVETGATVQVPLFITTGEKIKVDTRDGRYLGR 184
                     79***************************************************998 PP

>> EFP  Elongation factor P (EF-P) OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.0   3.6e-25   2.1e-21       1      54 []      68     121 ..      68     121 .. 0.98
   2 ?   -3.6   0.0         2   1.2e+04      37      50 ..     165     178 ..     161     180 .. 0.71

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 3.6e-25
                 EEEEEEEEETTEEEEEETTT--EEEEEHHHHTTGCGG--TT-EEEEEEETTEEE CS
         EFP   1 remqylYkdgdeyvFMdnetYeqielpkeqlgdaakfLkEgmevtvllyegepi 54 
                 r+mqylY+dg++yvFMd et++qi++p  ++g+aa++L ++ e tv ++eg p+
  KIR61208.1  68 RTMQYLYADGEDYVFMDLETFDQITVPGGTVGEAANYLLPEAEATVATHEGVPL 121
                 79*************************************************996 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2
                 G--TT-EEEEEEET CS
         EFP  37 fLkEgmevtvllye 50 
                 f++ g++++v + +
  KIR61208.1 165 FITTGEKIKVDTRD 178
                 77888888886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1429.86
//
Query:       KIR61209.1  [L=144]
Description: antitermination protein NusB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-33  113.8   0.0    7.9e-33  113.5   0.0    1.0  1  NusB      NusB family


Domain annotation for each model (and alignments):
>> NusB  NusB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.0   4.4e-37   7.9e-33       1     133 [.      13     139 ..      13     140 .. 0.93

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 4.4e-37
                 HHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHT-........--HHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT--GGGS-HHHHHHHHHHHHHHTTS- CS
        NusB   1 skaRelalqalyqveinkedeeekeailqealn.klleeedldeedkafltelvkgvlrnleelDeliekllknwplerlskvdraiLrlavyellyld 98 
                 +kaR+ al++l++        +++++   e+l+   ++ e+ ++e+ +++  lv+gv ++l+++Deli++++++w+l+r++ vdr++ r+avyelly d
  KIR61209.1  13 RKARKRALDVLFEA-------DLRDRPPVEVLAgYVERIEKPHPEHLGYAVGLVEGVAAHLDRIDELIASYAEGWTLDRMPAVDRNLARIAVYELLYVD 104
                 589***********.......666666666666666778889********************************************************* PP

                 SSHHHHHHH.HHHHHHHHS-HHHHHHHHHHHHHHH CS
        NusB  99 dvPakvaineavelakkygdeksakFvNgVLrkva 133
                 + ++ vai+eavela+++++++s++F NgVL+++a
  KIR61209.1 105 ELDDAVAISEAVELARQMSTDDSPRFLNGVLGRIA 139
                 ********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1073.11
//
Query:       KIR61210.1  [L=162]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-10   38.8   5.8    1.1e-08   35.3   1.8    2.5  2  HTH_31    Helix-turn-helix domain
      1e-09   38.3   0.1      1e-08   35.1   0.0    2.4  3  HTH_3     Helix-turn-helix
  ------ inclusion threshold ------
       0.33   10.9   3.0        0.8    9.6   0.1    2.7  3  HTH_25    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   1.8   1.9e-12   1.1e-08       2      61 ..       9      69 ..       8      70 .. 0.97
   2 !    5.0   0.1    0.0054        32      36      59 ..     117     140 ..      98     146 .. 0.72

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.9e-12
      HTH_31  2 LGalLralReraGLsqeevAerlg..vsestlsrlEqGrrgrpspavlealaralgldpaer 61
                LGa+Lr  R+++GLs++ v e ++  + +  ++ +E+G r  ++ + l+ la+ ++++++e+
  KIR61210.1  9 LGARLRSIRQQQGLSLQGVEEKSNgrWKAVVVGSYERGDR-AVTVSRLAELADFYRVPVSEL 69
                9***************************************.5*****************996 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0054
      HTH_31  36 qGrrgrpspavlealaralgldpa 59 
                 +Gr    + ++l+ala +++++p+
  KIR61210.1 117 NGRVLSIRADDLRALAIVYDASPS 140
                 3444445999***********986 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.7e-12     1e-08       1      55 []      13      69 ..      13      69 .. 0.98
   2 ?   -2.0   0.0      0.66   3.9e+03      33      49 ..      77      93 ..      74      98 .. 0.79
   3 ?   -0.1   0.0      0.17     1e+03      35      53 ..     122     140 ..     117     142 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1.7e-12
                HHHHHHHTTHHHHHHHHHHT..SSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklG..vsrstisriEnGernPsletlkklakaLgvsldel 55
                l+ +R+q+gls++ + ek++   +   +  +E+G+r+ ++++l +la+++ v+ +el
  KIR61210.1 13 LRSIRQQQGLSLQGVEEKSNgrWKAVVVGSYERGDRAVTVSRLAELADFYRVPVSEL 69
                799**************************************************9997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.66
                SSCSBHHHHHHHHHHHT CS
       HTH_3 33 ernPsletlkklakaLg 49
                + +P+ ++++ l++ ++
  KIR61210.1 77 RHEPTSKIVLDLERLYD 93
                67899999999998875 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.17
                 CSBHHHHHHHHHHHTSEHH CS
       HTH_3  35 nPsletlkklakaLgvsld 53 
                 +++ + l +la +++ s++
  KIR61210.1 122 SIRADDLRALAIVYDASPS 140
                 578899******9998876 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.62   3.7e+03      50      56 ..       4      10 ..       3      11 .. 0.85
   2 ?    9.6   0.1   0.00013       0.8       1      20 [.      12      31 ..      12      35 .. 0.91
   3 ?    0.3   0.1       0.1   6.2e+02      46      55 ..     100     109 ..      88     112 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.62
                HHHHHTT CS
      HTH_25 50 nYArlLg 56
                +YA++Lg
  KIR61210.1  4 EYAKSLG 10
                6****99 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00013
                HHHHHHHTTT--HHHHHHHS CS
      HTH_25  1 rLraaRearglsleevaket 20
                rLr  R+++glsl+ v+++ 
  KIR61210.1 12 RLRSIRQQQGLSLQGVEEKS 31
                79************999875 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.1
                 HHHHHHHHHT CS
      HTH_25  46 gylrnYArlL 55 
                 +y+ +YAr++
  KIR61210.1 100 AYVARYARAI 109
                 5899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1251.13
//
Query:       KIR61211.1  [L=195]
Description: uracil phosphoribosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.4e-25   87.3   1.0    8.7e-25   87.1   1.0    1.1  1  Pribosyltran  Phosphoribosyl transferase domain
     0.0074   15.8   0.0      0.014   14.9   0.0    1.4  1  UPRTase       Uracil phosphoribosyltransferase
  ------ inclusion threshold ------
      0.015   14.8   0.0      0.025   14.1   0.0    1.4  1  PRTase_2      Phosphoribosyl transferase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   1.0   1.5e-28   8.7e-25       4     139 ..      19     161 ..      16     178 .. 0.90

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 1.5e-28
                   HTTT---EEEEEEETTEEEEEE.--GGGEEEEEEETTTHHHHHHHHHHS......TT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE CS
  Pribosyltran   4 ellenpaildavarlaaeilee.yngkpdvvvgiargGvpfakiladeL......evplayvrkvkyrpdgseeaargssdesrlledpagkkVliV 93 
                    +l+   +++ v+r+a++ile+  +   +v++gi+++Gvp+a +la ++       vp  +++++ yr+d    a+r +   + +++ ++gk+V++V
    KIR61211.1  19 VILAAADVSRVVDRIAHQILEKtQGAADTVLLGIPTRGVPLARRLAARIgtfedvAVPAGVLDITLYRDDLRRHATRAVGPTQLPAGGIDGKRVVLV 115
                   5777788999************777777799*********************************************9999999************** PP

                   -SEESSSHHHHHHHHHHHCC-.BSEEEEEEEEE-HHHHHHHHHH-TT CS
  Pribosyltran  94 DDildtGgTllaalelLkekg.peevriavlvdkpateeevdknakr 139
                   DD+l +G+T++aal++L ++g p++v +avlvd+++++++ ++++ +
    KIR61211.1 116 DDVLFSGRTVRAALDALSDVGrPASVQLAVLVDRGHRQLPIRADY-V 161
                   *******************98588*****************8843.3 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.3e-06     0.014      85     150 ..      70     138 ..      17     149 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.3e-06
     UPRTase  85 lrellpearvghlglqreeetlepv..eyynkLPkki.aertvlllDpviaTGgsaaaaiqlLkergvg 150
                 ++++   a v+ + l+r++   ++      ++LP+   + ++v+l+D v+ +G+++ aa++ L + g +
  KIR61211.1  70 FEDVAVPAGVLDITLYRDDLRRHATraVGPTQLPAGGiDGKRVVLVDDVLFSGRTVRAALDALSDVGRP 138
                 5666667788899999998766665114458999987799************************97754 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.1e-06     0.025     116     165 ..     104     153 ..      81     179 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.1e-06
    PRTase_2 116 ellaaakelvLvDDEistGktalnliralqeklprkryvvvslvdwrsee 165
                 +   + k++vLvDD + +G+t+ + ++al++     ++ ++ lvd  +++
  KIR61211.1 104 AGGIDGKRVVLVDDVLFSGRTVRAALDALSDVGRPASVQLAVLVDRGHRQ 153
                 55556789**********************999999********976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1578.15
//
Query:       KIR61212.1  [L=308]
Description: aspartate carbamoyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-43  145.8   0.1    1.3e-42  145.3   0.1    1.2  1  OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl
    9.8e-28   97.2   0.0    1.8e-27   96.3   0.0    1.5  1  OTCace    Aspartate/ornithine carbamoyltransferase, Asp/Orn b


Domain annotation for each model (and alignments):
>> OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   0.1   1.5e-46   1.3e-42       1     147 [.       3     145 ..       3     146 .. 0.95

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 1.5e-46
                 S-BSSGGGS-HHHHHHHHHHHHHHHHHHHT.TT-STTTTT-EEEEEESS--HHHHHHHHHHHHHTTSEEEEEESTTTSCTTTGGSTTSSCHHHHHHHHH CS
    OTCace_N   1 rhllsledlskeeieelldlaaelkekvkk.ekkekllkgktlallFeepStRTrvSfevAakrlGgkvlslseaediqlssvskgrkEsleDtarvls 98 
                 rhlls +dl++++ + +ld+aae+     +  kk + l+g+t+++lF+e+StRTr+Sfe+Aakrl+++v+++s++     ssv+kg  Esl+Dta +l+
  KIR61212.1   3 RHLLSGADLDAATATLILDTAAEMATVAGReVKKLPALRGRTVVNLFYEDSTRTRISFEAAAKRLSADVINFSAK----GSSVTKG--ESLKDTALTLQ 95 
                 8************************988777899999************************************55....79999**..*********** PP

                 HHT.SEEEEEESSHHHHHHHHHHHSSEEEEEEETSSB-HHHHHHHHHHHH CS
    OTCace_N  99 ryv.daiviRhpgaeeleelakyasvpviNagdgdgeHPtQaLaDlltir 147
                 +++ da+v+Rhp++   ++la++ + +v+Nagdg++eHPtQaL+D++t+r
  KIR61212.1  96 AMGaDAVVVRHPASGAPHRLADWVDGSVVNAGDGTHEHPTQALLDAYTMR 145
                 ************6656********************************97 PP

>> OTCace  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.0   2.1e-31   1.8e-27       2     157 .]     153     302 ..     152     302 .. 0.92

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 2.1e-31
                 C.EEEEESS.TTSHHHHHHHHHHHHCT-EEEEES-TTSSH-HHHHHHHHHHHHHHT-EEEEESSCHHHHTT-SEEEE--SSETTCCGGHHHHHHHHCC. CS
      OTCace   2 glkiafvGd.kknnvanslikllarlgmdvvlvaPkglepdkevleeakknakksggsititedleeavkgaDvvytdvwvsmgeekereerlkklkd. 98 
                 gl++a vGd  +++va+s + ll+ lg++v+lv+P++l p    ++ a++     +  i ++ dl +++ ++Dvv++ +++     ++ + ++++++  
  KIR61212.1 153 GLHVAVVGDvLHSRVARSNVLLLSTLGAKVTLVGPPTLIP----VDIAQAL----APGIDVSYDLDAVLPNVDVVMMLRVQRERMTDSYFPSAREYARr 243
                 899*******9**************************666....4556665....467888899999**************777788888999999999 PP

                 CSB-HHHHHHS-TT-EEEE-S---BTTTB-HHHHTSTTBHHHHHHHHHHHHHHHHHHHH CS
      OTCace  99 yqvteellklakkdaivlHcLPakrgeEvtdeVfdsprsvvfeqaeNrlhtikAllvll 157
                 y +++  +++  ++aiv+H+ P++rg+E+t eV dsprs ++eq+ N++ +++A+l+ll
  KIR61212.1 244 YGLDAPRMRRLPEHAIVMHPGPMNRGMEITPEVADSPRSTIVEQVANGVSVRMAVLYLL 302
                 ********************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2317.76
//
Query:       KIR61213.1  [L=443]
Description: dihydroorotase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-18   65.6   0.1      7e-18   65.0   0.1    1.2  1  Amidohydro_1  Amidohydrolase family
    2.4e-16   59.9   0.0    4.1e-16   59.2   0.0    1.4  1  DHOase        Dihydro-orotase-like
    7.6e-05   22.4  10.0     0.0018   17.8   0.4    2.9  2  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.1   1.2e-21     7e-18       2     342 ..      48     433 ..      47     435 .. 0.80

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 1.2e-21
                   EEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTHHHHHHHHHHHTSSSEEEEEEESSEGGSGCCCSHHHHH CS
  Amidohydro_1   2 vlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattstgiealleaaeelplglrilggkvsldrgsaetskasr 98 
                    lPGl+D+H+Hl+             +p+++ ae++esg ++a  +G t v++m +t   ++++ +  +e++   l+ ++g       + ++  a++
    KIR61213.1  48 ALPGLVDLHTHLR-------------EPGREDAETVESGSRAAALGGYTAVCAMANTS--PVADTAGVVEQV-WRLGREAG--L---VDVQPIGAVT 123
                   69**********9.............******************************86..888888888884.34444444..2...2333333333 PP

                   HHHHHHHHHHHHHCTTTCEE.EEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEE..TSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEE. CS
  Amidohydro_1  99 eklkagaaetikgkadgvvk.valapheapafsdeelkealkeakkrdlpvaiHa..letkgevedaeaafgetiehgthlevaeslglldeikli. 191
                   + l+ +    + ++ad++    ++ + ++  + + +++ al+ +k+ d  +a Ha    +++  +++e +   +   ++   vae++ +++++ l+ 
    KIR61213.1 124 VGLAGERLAELGAMADSAARvRIFSDDGHCVADPKLMRRALEYVKAFDGIIAQHAeePRLTEGAQMHEGEVSTRLGLTGWPAVAEEAIIARDVLLAe 220
                   333333333557899999999999*******************************6534455567999999999999***************99998 PP

                   ....EHCTCEEEHHHHHHHHHHHHHHCEE........HHHHHHHH.................................SEHHHHHHHHHHHHTSCEE CS
  Amidohydro_1 192 ....lahgvhltpteaellkerlkeagva........hcpfsnsi.................................lrsgrealrkaldeGvkvg 243
                       + h +h++ + ++ + +++k  gv         h+  ++ +                                  +++++alr al eGv+ +
    KIR61213.1 221 hvgsRLHVCHVSTAGSVEVLRQAKARGVRvtaevtphHLLLTDAVvsgrselaspalannwspagaydpvfkvnpplrTATDIAALRAALAEGVIDV 317
                   888888889999664444444446666666688888866666666788889999999999************************************* PP

                   EEEECT...........TSSCCGGHHHH..HHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC....CT.. CS
  Amidohydro_1 244 lgtDga...........asgnslnllee..lrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdl....di.. 321
                   ++tD+a           a            + l+l+++ + + +    g  +  + + ++  +A++ gld +    ++G +A+l++vd+     i  
    KIR61213.1 318 IATDHAphavedkecewA-Y-------ArpGMLGLETALSIALD--VLGPQWDLIAERMSRAPARIAGLDGHGVDPAPGVPANLTLVDPaarrVIep 404
                   ****99999766555532.2.......22356666666655554..45566777889************9777779***********9987751166 PP

                   ........CGGGTTTCTSEEEEEEEETTE CS
  Amidohydro_1 322 ........laafvglkkdgnvkkvivkGk 342
                           +++++ ++ +g ++ ++++G+
    KIR61213.1 405 aelasrsrNTPYARMTLPGRIVATFLRGE 433
                   8899999******************9996 PP

>> DHOase  Dihydro-orotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   6.9e-20   4.1e-16       3     140 ..      47     234 ..      45     236 .. 0.90

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 6.9e-20
      DHOase   3 llvpglidlavhlrelsgeakeliet...........tvaaygvtfkaP........................aaitveddsee.............af 53 
                 + +pgl+dl+ hlre++ e  e++e             v a+++t +                           a+tv+  +e                
  KIR61213.1  47 VALPGLVDLHTHLREPGREDAETVESgsraaalggytAVCAMANTSPVAdtagvveqvwrlgreaglvdvqpiGAVTVGLAGERlaelgamadsaarVR 145
                 5689*********************9999999999877888888877669999*****************99966666666666666777777766689 PP

      DHOase  54 iltddtvyvtiqllefeglkk.aeLdqalkaiaeDDevtnqsavqdfelarfyGvqLkG...vCeaekivydvLlakaagcgfyvsiiytk 140
                 i++dd+  v    l+  +l+  ++ d  + ++ae+  +t+++ ++++e++ + G  L G   v e+  i++dvLla+  g+  +v++++t 
  KIR61213.1 146 IFSDDGHCVADPKLMRRALEYvKAFDGIIAQHAEEPRLTEGAQMHEGEVSTRLG--LTGwpaVAEEAIIARDVLLAEHVGSRLHVCHVSTA 234
                 *********************9********************************..****99**************************996 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.4   3.1e-07    0.0018       2      43 ..      40      81 ..      39     103 .. 0.73
   2 !    7.2   2.6   0.00049       2.9     254     471 ..     197     434 ..     177     436 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.1e-07
  Amidohydro_3  2 viDakGrlvlPGFvDsHtHlagggvnlrllrlpdarvtsleg 43
                  v+D +G++ lPG+vD HtHl + g + +++  +++r+ +l g
    KIR61213.1 40 VVDGTGLVALPGLVDLHTHLREPGREDAETVESGSRAAALGG 81
                  99*****************99988333333333335555555 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00049
  Amidohydro_3 254 f...tgwpdfedea.laelvaaadergldva.ihaigdaavddvldafeaaaekngnqdrrrlehaegv......tesqiervaalqvaagvqpvfn 339
                   +   tgwp + +ea +a+ v +a ++g +++ +h+ ++++v+ vl++  a++ +   + + + +h   +      + + ++++ a ++ ++  + ++
    KIR61213.1 197 RlglTGWPAVAEEAiIARDVLLAEHVGSRLHvCHVSTAGSVE-VLRQAKARGVRVTAE-V-TPHHLLLTdavvsgRSELASPALANNWSPAGAYDPV 290
                   155688888888888888888888888888724555555555.888777773333333.1.333333333323556667777777777666665555 PP

  Amidohydro_3 340 fedelldsrlg.perargs...tpvkellnagvkvalgsD.apvgpfdpwprigaavmrktrrgg........evlrpdeelsleealalyTrgpAk 423
                   f           +++ r+    +++++ l+ gv  + ++D ap ++ d+  +  +a ++  +           +vl+p     +  ++  ++r pA+
    KIR61213.1 291 F---------KvNPPLRTAtdiAALRAALAEGVIDVIATDhAPHAVEDKECEWAYARPGMLG--LetalsialDVLGPQ----WDLIAERMSRAPAR 372
                   5.........2233333333668888889999999999998777666554333333332222..133444555555554....77788999****** PP

  Amidohydro_3 424 algledrkGtLevGadADlvvld.adpldvdppelaear.............vrltvvdGrv 471
                   + gl+ +    ++G +A+l++ d a++  ++p+ela+               +++t  +G++
    KIR61213.1 373 IAGLDGHGVDPAPGVPANLTLVDpAARRVIEPAELASRSrntpyarmtlpgrIVATFLRGEP 434
                   ******9889*************777777777777777688888666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2900.22
//
Query:       KIR61214.1  [L=387]
Description: carbamoyl phosphate synthase small subunit [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-51  173.3   0.1    4.3e-51  172.1   0.0    1.7  2  CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CP
    3.2e-35  121.6   0.0    5.3e-35  120.9   0.0    1.3  1  GATase           Glutamine amidotransferase class-I
    1.8e-08   34.4   0.0    6.5e-08   32.6   0.0    1.9  2  Peptidase_C26    Peptidase C26


Domain annotation for each model (and alignments):
>> CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CPSase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.1   0.0   7.2e-55   4.3e-51       2     127 ..       7     133 ..       6     134 .. 0.97
   2 ?   -1.3   0.0       0.3   1.8e+03     105     126 ..     133     156 ..     131     157 .. 0.74

  Alignments for each domain:
  == domain 1  score: 172.1 bits;  conditional E-value: 7.2e-55
  CPSase_sm_chain   2 avLvLedGtvfeGksfg.akeavGEvvfnTgmtGYqeiltDpsYagqilvltypliGnyGvneedvesekikvaglvvrelseepsnwraeesL 94 
                      a+LvLedG++f+G+++g  +e++GE vfnTgmtGYqe+ltDpsY++q++v t+p+iGn+Gvn+ed es++i+vag+vvr+ ++ psnwr++ +L
       KIR61214.1   7 AILVLEDGRTFHGEAYGsVGETFGEAVFNTGMTGYQETLTDPSYHRQVVVQTAPHIGNTGVNAEDDESARIWVAGYVVRDPARVPSNWRSTGTL 100
                      79***************66*************************************************************************** PP

  CPSase_sm_chain  95 sewlkeekipgisgvDTRaLtkklrekgamkgv 127
                      ++ l++e+++gisgvDTRaLt++lre+gam+  
       KIR61214.1 101 ADRLAAEGVVGISGVDTRALTRHLRERGAMRVG 133
                      ******************************865 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.3
  CPSase_sm_chain 105 gisgv..DTRaLtkklrekgamkg 126
                      gis v  D RaL  ++r++ +m g
       KIR61214.1 133 GISSVddDPRALLARVRQSPQMVG 156
                      566662258********9988876 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.0   8.9e-39   5.3e-35       4     189 ..     185     373 ..     182     374 .. 0.96

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 8.9e-39
                 ESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEEE CS
      GATase   4 DnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.vegkieaikearenkiPiLGICLGmQllaiefgrkvvkekekehh 101
                 D +  +++n+ ++l+++gv+++v+p  +s++    l++++d++++s+Gpg+p+ ++g + +++e+++++iP++GIC+G Q+l+ ++g  ++k   ++h+
  KIR61214.1 185 DLG--IKRNVPRRLAARGVTTHVLPAGSSIDDL--LATGADAVFFSPGPGDPAtADGPVGLAREVLTRRIPLFGICFGSQILGRALGFGTYKLG-YGHR 278
                 666..9*********************999999..589********************************************************.**** PP

                 EEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESG.............CHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHH CS
      GATase 102 ggtmrlgddetallyglknevierhrHryevnpk.............elepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnfl 187
                 g ++++ d      + ++++  ++h+H+++v+               ++e  g+ev++++ +d+ +++++ ++ p++ vQ+HPE+  +p+++ +lf+ +
  KIR61214.1 279 GINQPVLD------RATGKVEVTSHNHGFAVQVPgagqgavvpdqviDTEFGGVEVSHVCLNDNVVEGLRALDVPAFTVQYHPEAAAGPHDADYLFDRF 371
                 ********......8888999***********999*********999999999********************************************98 PP

                 HH CS
      GATase 188 ik 189
                  +
  KIR61214.1 372 AE 373
                 75 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       0.3   1.8e+03     166     186 ..      43      63 ..      32      72 .. 0.73
   2 !   32.6   0.0   1.1e-11   6.5e-08      96     216 .]     240     356 ..     210     356 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.3
  Peptidase_C26 166 eeievnslHhqaikelaeelr 186
                    e+    s+H+q + + a+++ 
     KIR61214.1  43 ETLTDPSYHRQVVVQTAPHIG 63 
                    4555579******99998765 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 1.1e-11
  Peptidase_C26  96 aLiraalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaikelaeelrveAva 191
                     L r++l+r++P++giC G q+l  alG  +y+  + + g+++ + ++    + +v+ ++ ++  ++ g+ +   + +  q i++   +++v+ v+
     KIR61214.1 240 GLAREVLTRRIPLFGICFGSQILGRALGFGTYKLGYGHRGINQPVLDR-ATGKVEVTSHNHGFAVQVPGAGQG--AVVPDQVIDTEFGGVEVSHVC 332
                    5899************************88888777544444333333.333555555566777777775554..55789***************9 PP

  Peptidase_C26 192 e.DgviEaieseeakafvlgvQwHPE 216
                      D+v+E +++ +  ++++ vQ+HPE
     KIR61214.1 333 LnDNVVEGLRALD--VPAFTVQYHPE 356
                    88*******9999..679*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2990.96
//
Query:       KIR61215.1  [L=1125]
Description: carbamoyl phosphate synthase large subunit [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.8e-102  340.7   0.0    3.6e-63  212.9   0.0    2.3  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
      9e-36  122.9   0.0    1.7e-35  122.0   0.0    1.5  1  CPSase_L_D3      Carbamoyl-phosphate synthetase large chain, 
    2.3e-19   69.3   0.0    9.7e-19   67.4   0.0    2.1  2  MGS              MGS-like domain
    3.8e-15   55.9   0.0    3.8e-09   36.4   0.0    2.3  2  ATP-grasp        ATP-grasp domain
      4e-11   42.8   0.0    6.8e-05   22.5   0.0    2.3  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    9.6e-11   41.5   0.1    4.3e-06   26.5   0.1    3.0  2  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
    2.9e-05   24.2   0.0      0.017   15.2   0.0    2.5  2  ATP-grasp_3      ATP-grasp domain
      6e-05   22.7   0.0      0.021   14.4   0.0    3.0  2  ATP-grasp_4      ATP-grasp domain
     0.0004   20.0   0.0       0.93    9.0   0.0    3.1  2  ATP-grasp_2      ATP-grasp domain
     0.0017   17.9   0.1       0.11   11.9   0.0    2.4  2  ATP-grasp_5      ATP-grasp domain
  ------ inclusion threshold ------
      0.012   15.3   0.0        2.6    7.6   0.0    2.5  2  RimK             RimK-like ATP-grasp domain


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.9   0.0   2.2e-66   3.6e-63       1     210 [.     128     343 ..     128     344 .. 0.90
   2 !  125.7   0.0     1e-39   1.7e-36       7     210 ..     707     904 ..     701     905 .. 0.93

  Alignments for each domain:
  == domain 1  score: 212.9 bits;  conditional E-value: 2.2e-66
                  SHHHHHHHHHHTT-BB........SSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--S CS
  CPSase_L_D2   1 Dkesakealkkinvpv........vpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslk 90 
                  D++ +k++++k++v++        vp s +  +++ e+ a ++e+g Pv+i+++f++GG+G+++a+++++l+ ++ ++la+++     ++vl+e+s+ 
   KIR61215.1 128 DRQLFKDIVAKAGVRLglddpaglVPRSRV-CHSMAEVEATVAELGLPVVIRPSFTMGGLGSGMAHTDADLQRIAGAGLAASP----VHEVLIEESVL 220
                  666777777776665422221111333333.69*************************************************6....9********** PP

                  SSEEEEEEEEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-.EEEEEEEEEEETTTTEEEEEEEESS--CCHH CS
  CPSase_L_D2  91 gpkeiEvevlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgv.vgagtveflldpkskeyyviEvNtRlsvesa 185
                  g+ke+E+e++rD+++nv++vc++en++++  +t+++++vAP+ tLtd+e+q+lr   ++v+revgv +g+++++f+++p +++++viE+N+R+s++sa
   KIR61215.1 221 GWKEYELELMRDRHDNVVVVCSIENVDPMgvHTGDSVTVAPAMTLTDREYQRLRDLGIAVLREVGVdTGGCNIQFAVNPADGRIVVIEMNPRVSRSSA 318
                  ******************************************************************55789*************************** PP

                  HHHHHHS--HHHHHHHHHTT--GCG CS
  CPSase_L_D2 186 laekaTGldlvkeaakialgekLee 210
                  la+kaTG++++k+aak+a g++L+e
   KIR61215.1 319 LASKATGFPIAKIAAKLAIGYTLDE 343
                  ***********************97 PP

  == domain 2  score: 125.7 bits;  conditional E-value: 1e-39
                  HHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEEEEETT CS
  CPSase_L_D2   7 ealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDak 104
                  + l++++ +        +++ eea aia+eigyPv++++++ lGG+Gm +++++ +l++ + +a++ ++    ++ vlv+++l+   ei+v+ l Da+
   KIR61215.1 707 AVLARAGLRAPAHGM--ATSYEEAKAIAAEIGYPVLVRPSYVLGGRGMEIVYDDPTLRDYIGRATDISP----DHPVLVDRFLDDAIEIDVDALCDAD 798
                  556666665543333..4799***********************************************6....9************************ PP

                  S-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HHHHHH CS
  CPSase_L_D2 105 gnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlvkeaa 200
                  g v   + +e + +   + +++  v P  tL  ++  ++r+ + +++r vgv+g  +v+++l+  ++  yv+E N+R s+  +  +kaT ++l+k+aa
   KIR61215.1 799 GEVYLGGVMEHIEEAgiHSGDSSCVLPPMTLAGSHLAQVRRYTEAIARGVGVRGLLNVQYALK--DDVLYVLEANPRASRTVPFVSKATAVPLAKAAA 894
                  ************99999*********************************************9..599****************************** PP

                  HHHTT--GCG CS
  CPSase_L_D2 201 kialgekLee 210
                  +ialg++  e
   KIR61215.1 895 RIALGATVAE 904
                  *****99765 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.0   1.1e-38   1.7e-35       2     122 .]     434     555 ..     433     555 .. 0.94

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 1.1e-38
  CPSase_L_D3   2 elkeptdeRifaiaealrrglsveeihelt.kidpwFLekleelvelekelkkkkkeldeellreakklGfsDkqiaell.eeeeeeevrelrkklgi 97 
                  +l +p+d R++++ +alr g+sv e+++++  idpwFL++++ lvel++e+ ++   ld +llr+ak++G+sD+q+a+l  e   e+ vr+lr++lg+
   KIR61215.1 434 ALGTPHDGRLYTVERALRLGASVAEVSAASgGIDPWFLDQIAALVELRAEIVDAP-VLDVDLLRRAKRAGLSDRQLAALRpELAAEDGVRTLRHRLGV 530
                  6889**********************999846*******************9998.7********************99863356778********** PP

  CPSase_L_D3  98 lpvykrvDtcAaeFeaetpYlYstY 122
                  +pvyk+vDtcAaeFea+tpY+YstY
   KIR61215.1 531 RPVYKTVDTCAAEFEATTPYHYSTY 555
                  ************************9 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.1   5.1e+03       5      20 ..     677     692 ..     675     693 .. 0.86
   2 !   67.4   0.0     6e-22   9.7e-19       2      95 .]    1000    1089 ..     999    1089 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.1
                 HHHHHHHTTCEEEEEH CS
         MGS   5 lakklkelgfellATg 20 
                 la++lk++g+ ++ T+
  KIR61215.1 677 LAQRLKNAGVPIVGTS 692
                 7999999999999995 PP

  == domain 2  score: 67.4 bits;  conditional E-value: 6e-22
                  HHHHHHHHHHTTCEEEEEHHHHHHHHHTT--EEECCCCHSTGSGGTHCHHHHHHHHTTSCCEEEEE--THHHHHHCHHHHHHHHHHHTTSHEES CS
         MGS    2 lvelakklkelgfellATgGTakllkeagipvtevvektgegerlggrveildaikngeidlvintlypfkatvakdgykirraaenidIplpt 95  
                  ++  +k+l++lgfe++AT GTa++l+ +gi+++++ ++ + g   +     + +i +g++ lv+nt+++  a  ++dgy+ir aa+  dIp++t
  KIR61215.1 1000 MIFPIKRLADLGFEIVATAGTAEVLRRHGIACEQIRKHYEAGAGAD----AVSMILAGDVALVVNTPQGSGASARSDGYEIRSAAVTADIPCIT 1089
                  78889*************************************8888....******************************************98 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.9e-06    0.0032       8     161 ..     152     314 ..     149     322 .. 0.81
   2 !   36.4   0.0   2.3e-12   3.8e-09       3     160 ..     711     874 ..     709     877 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.9e-06
                 B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEEEEEET CS
   ATP-grasp   8 vprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvlvvrsaeGetafypvvetvqed 102
                 vpr  + +s +e+e++++elglpvv++ +     G G+ + + ++dl++++ a       ++v++Ee v   kE  +  +r+++ +++++  +e+v   
  KIR61215.1 152 VPRSRVCHSMAEVEATVAELGLPVVIR-PSFTMGGLGSGMAHTDADLQRIAGAGlaasPVHEVLIEESVLGWKEYELELMRDRHDNVVVVCSIENVDPM 249
                 7889999999*****************.999*****************9988766776778999**999988888888889999999999999999988 PP

                 TEEE...EEEECEE.-SCHHHHHHHHHHHHHHHHHTS.SEEEEEEEEEE.TTCTEEEEEEESS-- CS
   ATP-grasp 103 gilr...lsvapae.vsekaqkkaeeiakkiveeLgg.vGvfavElFvl.edgellvnElapRpH 161
                 g+     + vapa  +++++ ++ +++   +++e+g+  G   + + v  +dg+++v E+ pR+ 
  KIR61215.1 250 GVHTgdsVTVAPAMtLTDREYQRLRDLGIAVLREVGVdTGGCNIQFAVNpADGRIVVIEMNPRVS 314
                 88743225566665144556777777777888888865677888877776788899999999985 PP

  == domain 2  score: 36.4 bits;  conditional E-value: 2.3e-12
                 TTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEE CS
   ATP-grasp   3 klglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvlvvrsaeGetafypvve 97 
                 ++gl+ p + +++s ee++++a+e+g+pv+v+ +     G+G  +v ++ +l++ +  +     +++v+v  f +   E+ v +  +a+Ge++   v+e
  KIR61215.1 711 RAGLRAPAHGMATSYEEAKAIAAEIGYPVLVR-PSYVLGGRGMEIVYDDPTLRDYIGRAtdisPDHPVLVDRFLDDAIEIDVDALCDADGEVYLGGVME 808
                 6889999999**********************.99999*************99998888788799********************************** PP

                 EEEETTEE....EEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS- CS
   ATP-grasp  98 tvqedgil....rlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapRp 160
                 +++e gi       ++ p+++  +++++++++++ i++ +g+ G++ v   ++ d+ l+v E  pR 
  KIR61215.1 809 HIEEAGIHsgdsSCVLPPMTLAGSHLAQVRRYTEAIARGVGVRGLLNVQYALK-DDVLYVLEANPRA 874
                 ***988762221578889999999************************98777.7779999999996 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.2e-06    0.0019      23     174 ..     159     311 ..     143     319 .. 0.83
   2 !   22.5   0.0   4.2e-08   6.8e-05      26     174 ..     726     872 ..     711     898 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.2e-06
                      -H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHH..HHHTT-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-H CS
  Dala_Dala_lig_C  23 ekkellekveeelgypvfVKpareGSSvGvskveseeelkeaie..eafkydekvlvEeai.egreievavlgneklevsevgeivvkkgfydy 113
                      ++ + +e+ ++elg+pv+++p+ +   +G   +++ ++l++      a++  ++vl+Ee +   +e e  ++ + + +v +v  i       d 
       KIR61215.1 159 HSMAEVEATVAELGLPVVIRPSFTMGGLGSGMAHTDADLQRIAGagLAASPVHEVLIEESVlGWKEYELELMRDRHDNVVVVCSIENV----DP 248
                      4446788999************9888888888888888888765115778889******99899*********777777776666544....33 PP

                      HHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT-.-SEEEEEEEE.ETTTEEEEEEEES CS
  Dala_Dala_lig_C 114 eakysddkaqlevpaklekeveekiqelalkaykaldl.rGlaRvDffl.teegeivlnEvNt 174
                         +++d++++    +l++ +++++++l + + + +++ +G + + f +  ++g+iv+ E+N+
       KIR61215.1 249 MGVHTGDSVTVAPAMTLTDREYQRLRDLGIAVLREVGVdTGGCNIQFAVnPADGRIVVIEMNP 311
                      344567999999999*********************984699*******889**********6 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 4.2e-08
                      HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT..-SCEEEEE--.ESEEEEEEEEE..TSSCEEEEEEEEE-SSSSS-HH CS
  Dala_Dala_lig_C  26 ellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafky..dekvlvEeai.egreievavlg..neklevsevgeivvkkgfydye 114
                      e  +++ +e+gypv+V+p+      G++ v     l+++i +a     d+ vlv++++ ++ ei+v  l   ++++    v e++ + g+    
       KIR61215.1 726 EEAKAIAAEIGYPVLVRPSYVLGGRGMEIVYDDPTLRDYIGRATDIspDHPVLVDRFLdDAIEIDVDALCdaDGEVYLGGVMEHIEEAGIH--- 816
                      567899*************999999****************997543399********99******8887244555666788888887775... PP

                      HHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEES CS
  Dala_Dala_lig_C 115 akysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNt 174
                         s+d++ +  p +l  +  ++++ +   + + +++rGl  v + l+ ++ +++ E N+
       KIR61215.1 817 ---SGDSSCVLPPMTLAGSHLAQVRRYTEAIARGVGVRGLLNVQYALK-DDVLYVLEANP 872
                      ...5688889999******************************99998.89999999996 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00017      0.27      52     117 ..     276     345 ..     265     356 .. 0.75
   2 !   26.5   0.1   2.6e-09   4.3e-06      45     114 ..     833     903 ..     774     910 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
  ATPgrasp_Ter  52 laerlaeefgld.glvnvQvred.edg.pkLLEiNpRasGGlg.ysalaGvnlpylalklllgleteeve 117
                   l  ++ +e+g+d g  n+Q+  + +dg  +++E+NpR+s      s ++G  ++++a+kl+ g   +e++
    KIR61215.1 276 LGIAVLREVGVDtGGCNIQFAVNpADGrIVVIEMNPRVSRSSAlASKATGFPIAKIAAKLAIGYTLDEIP 345
                   5566777777763568***9876244579*********96555156777************997555554 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 2.6e-09
  ATPgrasp_Ter  45 kdeelielaerlaeefgldglvnvQvrededgpkLLEiNpRasGGlgy.salaGvnlpylalklllglete 114
                   + +++  ++e++a+ +g+ gl nvQ+  ++d +++LE NpRas ++   s ++ v l+++a++ +lg  ++
    KIR61215.1 833 HLAQVRRYTEAIARGVGVRGLLNVQYALKDDVLYVLEANPRASRTVPFvSKATAVPLAKAAARIALGATVA 903
                   4567788999************************************85266779************96544 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0053       8.6      31     158 ..     172     313 ..     149     316 .. 0.62
   2 !   15.2   0.0   1.1e-05     0.017      11     158 ..     709     874 ..     702     877 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0053
                  SSSEEEEESS-------B--SS--TTE...............EEEE---S.EEEEEEEEE.SSSEEEEEEEEEEEET....TEEEEEEE...S----H CS
  ATP-grasp_3  31 ekklvvKprdGaggesvrvveekeeaeaaieeve........lvqefieG.kplSvsllsdgekvlvlavnrqliekaekefvyaGnvt...pietel 116
                    ++v+ p+  +gg +  +++ + +++++             l+ e + G k++ ++l+ d ++++v++++ + ++      v +G ++   p+ t  
   KIR61215.1 172 GLPVVIRPSFTMGGLGSGMAHTDADLQRIAGAGLaaspvhevLIEESVLGwKEYELELMRDRHDNVVVVCSIENVDPM---GVHTGDSVtvaPAMTLT 266
                  567888888888888888888776666544433356777777777777775788999999999998888888888764...44555443111444444 PP

                  HHHHHHHHHHHHTTST..T-.-EEEEEEEE..ESS.SEEEEEEESS- CS
  ATP-grasp_3 117 keevvelaeevvekle..gl.aGyvGvDlv..lkdeepyviEvNPRl 158
                  ++e ++l    ++ l+  g+  G   + +    +d+ ++viE NPR+
   KIR61215.1 267 DREYQRLRDLGIAVLRevGVdTGGCNIQFAvnPADGRIVVIEMNPRV 313
                  4444444444444443112112333355553334699*********8 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.1e-05
                  HTTT.S---.........-EE..SS--SSSEEEEESS-------B--SS--TTE...............EEEE---.SEEEEEEEEE.SSSEEEEEEE CS
  ATP-grasp_3  11 LkeagvkvP.....tkleaee..leeeekklvvKprdGaggesvrvveekeeaeaaieeve........lvqefie.GkplSvsllsdgekvlvlavn 92 
                  L +ag+++P     t +e+++  ++e  +++ v p++  gg ++ +v +++++   i   +        lv +f++   ++ v++l+d+   + l   
   KIR61215.1 709 LARAGLRAPahgmaTSYEEAKaiAAEIGYPVLVRPSYVLGGRGMEIVYDDPTLRDYIGRATdispdhpvLVDRFLDdAIEIDVDALCDADGEVYLGGV 806
                  6777888887776644444331144559**********************9999999888789999999******6378*****************99 PP

                  EEEEET....TEEEEEEES-..---HHHHHHHHHHHHHTTST...T--EEEEEEEEESS.SEEEEEEESS- CS
  ATP-grasp_3  93 rqliekaekefvyaGnvtpi..etelkeevvelaeevvekle...glaGyvGvDlvlkdeepyviEvNPRl 158
                   ++ie a+   + +G ++ +  +++l+ +  + +++ +e++    g++G++ v   lkd+ +yv+E NPR 
   KIR61215.1 807 MEHIEEAG---IHSGDSSCVlpPMTLAGSHLAQVRRYTEAIArgvGVRGLLNVQYALKDDVLYVLEANPRA 874
                  99998755...55665544411345677777888888888877779999999******************6 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.3e-05     0.021       3     151 ..     173     312 ..     171     318 .. 0.79
   2 ?    4.8   0.0     0.011        19      55     151 ..     777     873 ..     735     877 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.3e-05
  ATP-grasp_4   3 lPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieG.eEfavdayfdeeGepvilnilkkefaseedvsdrly 99 
                  lPvvi+Ps  ++ lG  ++++++++++    i           +++    +++l+Ee + G +E+ +++  d++ + v++  ++    +  ++ d + 
   KIR61215.1 173 LPVVIRPSFTMGGLGSGMAHTDADLQR----IAGA------GLAAS--PVHEVLIEESVLGwKEYELELMRDRHDNVVVVCSIENVDPMGVHTGDSVT 258
                  577777777777777777777777766....2211......22222..246889*99999978**********999988888899999999999***9 PP

  ATP-grasp_4 100 vtsak.vieetlealeellkevnallglknfpvHiElrvs.edgkiipiEvnpl 151
                  v +a  ++  + ++l +l  +v +++g+  + + i + v+ +dg+i++iE+np+
   KIR61215.1 259 VAPAMtLTDREYQRLRDLGIAVLREVGVDTGGCNIQFAVNpADGRIVVIEMNPR 312
                  999861566677889************************94578*********6 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.011
  ATP-grasp_4  55 flvEeyie.GeEfavdayfdeeGepvilnilkkefaseedvsdrlyvt.sakvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnp 150
                  +lv  +++   E+ vda+ d +Ge  +  ++++      +  d   v+ +  +   +l+++ ++++++++ +g++ + + +   +++d  ++++E np
   KIR61215.1 777 VLVDRFLDdAIEIDVDALCDADGEVYLGGVMEHIEEAGIHSGDSSCVLpPMTLAGSHLAQVRRYTEAIARGVGVR-GLLNVQYALKDD-VLYVLEANP 872
                  5666666514599********************887777766666555156788899999999999999999987.556677776665.577777777 PP

  ATP-grasp_4 151 l 151
                  +
   KIR61215.1 873 R 873
                  5 PP

>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0026       4.2      18     124 ..     152     241 ..     145     247 .. 0.78
   2 !    9.0   0.0   0.00057      0.93      10      54 ..     708     751 ..     705     757 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0026
                  --SEEEESSHHHHHHHHHHHTSSSEEEEE--SSSTCCCTTCEEEESSHHHHHHHHHCCTTSEEE-TTS-TT-EEE--EEEEE---ECEEEEEEEEEET CS
  ATP-grasp_2  18 vpegevaesaeeaeeaakklgekelvvKaQvlaGGRGKagGvklvkskeeakeaakellgkelvtkqtgkeGkkvekvlveealdikkElYlsivlDr 115
                  vp+++v++s  e+e+++++lg  + v++    +GG G +    ++++  ++++    + g+ l          +v++vl+ee++   kE+ l ++ Dr
   KIR61215.1 152 VPRSRVCHSMAEVEATVAELGLPV-VIRPSFTMGGLGSG----MAHTDADLQR----IAGAGLA-------ASPVHEVLIEESVLGWKEYELELMRDR 233
                  789999999999999999999998.99999999988754....4444555544....4456666.......678999999999999999999999999 PP

                  TTTEEEEEE CS
  ATP-grasp_2 116 askkvvvia 124
                  + + vvv +
   KIR61215.1 234 HDNVVVV-C 241
                  8776554.4 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00057
                  HHHCTT----SEEEESSHHHHHHHHHHHTSSSEEEEE--SSSTCC CS
  ATP-grasp_2  10 ilakygvkvpegevaesaeeaeeaakklgekelvvKaQvlaGGRG 54 
                  +la+ g+++p   +a+s eea+++a+++g  +  v+     GGRG
   KIR61215.1 708 VLARAGLRAPAHGMATSYEEAKAIAAEIGYPV-LVRPSYVLGGRG 751
                  78999*************************99.77777788***9 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.031        51      26      52 ..     152     178 ..     151     181 .. 0.93
   2 !   11.9   0.0   6.9e-05      0.11      17      51 ..     707     741 ..     697     744 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.031
  ATP-grasp_5  26 vvetrlassaeeaveaaeeigypvvlK 52 
                  v+++r+++s +e+ ++++e+g pvv++
   KIR61215.1 152 VPRSRVCHSMAEVEATVAELGLPVVIR 178
                  68899********************96 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 6.9e-05
  ATP-grasp_5  17 elleaygipvvetrlassaeeaveaaeeigypvvl 51 
                  ++l+  g++++ + +a+s eea ++a+eigypv +
   KIR61215.1 707 AVLARAGLRAPAHGMATSYEEAKAIAAEIGYPVLV 741
                  79******************************976 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.011        18      18      71 ..     152     203 ..     133     221 .. 0.85
   2 ?    7.6   0.0    0.0016       2.6       9      89 ..     707     790 ..     699     810 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.011
                 ---EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHH CS
        RimK  18 vpntalardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlea 71 
                 vp++++ ++  ++e+++ ++  + Pvv++ +++  G++  +a++  +l+ +  a
  KIR61215.1 152 VPRSRVCHSMAEVEATVAEL--GLPVVIRPSFTMGGLGSGMAHTDADLQRIAGA 203
                 68899999999999999998..69*********************999998655 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0016
                 HHHHHTT-----EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHH.....GGG--EEEEE--SS-SEE CS
        RimK   9 klLakakikvpntalardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlea.....lkeailvqeyieeaened 89 
                 ++La+a++  p   +a ++e+a+++  +i  + Pv+v+ ++   G ++ +  +   l++ +        ++ +lv  +++ a + d
  KIR61215.1 707 AVLARAGLRAPAHGMATSYEEAKAIAAEI--GYPVLVRPSYVLGGRGMEIVYDDPTLRDYIGRatdisPDHPVLVDRFLDDAIEID 790
                 79************************999..69*****999888887777777777777664332222222346666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.49
# Mc/sec: 6910.50
//
Query:       KIR61216.1  [L=424]
Description: adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.1e-116  387.7   0.0   6.2e-116  387.4   0.0    1.0  1  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.4   0.0  3.5e-120  6.2e-116      10     404 ..      27     419 ..      21     421 .. 0.96

  Alignments for each domain:
  == domain 1  score: 387.4 bits;  conditional E-value: 3.5e-120
                  CEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHH CS
  Aminotran_3  10 llvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKla 107
                  ++v+  a+Gv+l  +dg++++D +ss++++++G++hP + +av +q+  +shv+fg lt+epa++la+ l++lap+gl++vfl++sGs +ve+A+K++
   KIR61216.1  27 PYVVAGARGVRLRLADGRELVDGMSSWWAAIHGYRHPVLDAAVVDQLGRMSHVMFGGLTHEPAVRLAQTLVELAPEGLERVFLCDSGSVSVEVAVKMC 124
                  478899******************************************************************************************** PP

                  HHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-S.CETT CS
  Aminotran_3 108 rkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEp.iqge 204
                   +y+r+ +++e+ ++ +++g++HG+t+  +sv++++ ++++l+g++lp +v+++ p    + + +  + a   +l +  ++++ e+aAvivEp +qg+
   KIR61216.1 125 LQYQRALGRPERRRLGTWRGGYHGDTFHPMSVCDPEGGMHHLWGDVLPRQVFAPVPP---AGFDAPPDPAYCAALADAVARHAHELAAVIVEPvVQGA 219
                  ********************************************************6...55667666777777777778999*************** PP

                  TTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTS...B--TTTT-HHHH CS
  Aminotran_3 205 gGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgs...hgsTfgGnplac 298
                  gG+ ++ p++l+ lre+++ h+vll++DE++tGfGrTG++fA+ehagvspD+++++KaltgG l+l+a+l+taev+  ++ ++   hg+Tf++nplac
   KIR61216.1 220 GGMRFHHPHYLRVLREVTRAHGVLLVFDEIATGFGRTGTMFAAEHAGVSPDVLCVGKALTGGyLTLAAALCTAEVAAGISRDGvlaHGPTFMANPLAC 317
                  *******************************************************************************99999************** PP

                  HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTCHHHHHHHHHCTEE-EEETTTEEEE---TT--HHHHH CS
  Aminotran_3 299 avalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevkekeilkkakekGvlilsaGdnvirllppliitdeeid 396
                  ava+a++ ++   +++ +++++gaal++gLe+l  ++  +++vR +G+++++ l +e++    + +++a + Gv+++++  ++++ +pp++  d++++
   KIR61216.1 318 AVANASIGLLRAGDWAAEVSRVGAALRAGLEPLRGAP-GVADVRVLGAIGVVQLDHEVDLA--AATAAAVDRGVWLRPFR-DLVYAMPPYVADDADVA 411
                  **********************************999.*********************66..89***************.9*************999 PP

                  HHHHHHHH CS
  Aminotran_3 397 elleilkk 404
                   +   + +
   KIR61216.1 412 RIAAGMAA 419
                  88776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2842.43
//
Query:       KIR61217.1  [L=278]
Description: Orotidine 5'-phosphate decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-31  109.3   0.0    2.4e-31  109.1   0.0    1.1  1  OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS famil


Domain annotation for each model (and alignments):
>> OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.0   1.3e-35   2.4e-31       2     224 ..      17     262 ..      16     263 .. 0.88

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 1.3e-35
                 EEEEEE-SSSH..............HHHH.HHHHHHGGGSSEEEEEHHHHHHHTHH...HHTHHHHHHHHHTSEEEEEEEE-S-HHHHHHHHHS.TCHH CS
   OMPdecase   2 nLclalDvata..............rell.eladkvgpsivvlKthydlvegwgfe..gtgaklaalarkhgflifeDrKfaDIGntvekqata.gsar 82 
                 +Lc+++D++                ++++  +++ +g+ ++v+K++ +++e++g++  ++++++++++r+ g l+++D+K++DIG+tv+++a a     
  KIR61217.1  17 PLCVGIDPHPGlltrwgltddvdglERFCrTVVEALGDRVAVVKPQSAFFERFGARgvAVLESTIRQLRDSGSLVLLDVKRGDIGSTVAAYASAyLDPS 115
                 69999999999999999999999997777367788899****************99************************************9987889 PP

                 HHTTESEEEEEGTGHHHHHHHHHHHHHHTTS.EEEEEESTSSGGHHHHHH..H....SHHHHHHHHHHHHHHH...TTESEEECCCHTHHHHHH..TTC CS
   OMPdecase  83 ikewadivtvhavaGkasvkalaeaaekwgnrgllilaqmsskgnlmlqe..k....gytqacveaarehkae...dfvmGfvaqetlnateed..add 170
                 + + +d+vt+++++G  s++++ e a+ +g  g+++la +s+++++++q+  +    +++qa+++++++ ++     +++G+v+++t  +t  d  a  
  KIR61217.1 116 SPLYVDAVTASPYLGVMSLAPMFELAATHG-GGVFVLALTSNPEGAAVQRavGadgrTVAQAVIDEIAQLNRGaqtLGSFGLVVGATIGDTGHDlsAVR 213
                 99***************************8.8******************9725789************99778889**********995555567789 PP

                 SCEEEHHHTTEEEEECTTCCGGGHHHHHHHTTCSEEEESHHHHTSSSHHHHHHH CS
   OMPdecase 171 fihltpgigleqggdgkgqqyntpekligiagadiiivGRgIlkagdpveeaer 224
                  + l pg g+ qg+++ +++      l       ++  +R++l ag++v+++++
  KIR61217.1 214 GPLLAPGLGA-QGATAADLRTVFGASL-P---WVLPSYSREVLHAGPDVAALRA 262
                 9999999998.8888888886533333.2...4677778888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2193.97
//
Query:       KIR61218.1  [L=105]
Description: integration host factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-05   24.1   0.4    5.6e-05   23.5   0.1    1.4  2  Ribosomal_S13  Ribosomal protein S13/S18
     0.0041   17.7   1.2      0.013   16.1   0.6    2.0  2  HHH_5          Helix-hairpin-helix domain
     0.0047   16.3   0.6     0.0047   16.3   0.6    1.0  1  CDC73_N        Paf1 complex subunit CDC73 N-terminal
  ------ inclusion threshold ------
      0.025   14.7   0.2      0.027   14.6   0.2    1.1  1  GldM_N         GldM N-terminal domain
       0.18   12.7   2.8       0.34   11.8   2.8    1.5  1  TPR_14         Tetratricopeptide repeat
       0.33    9.7   3.1        2.3    6.9   0.0    2.0  2  FbpA           Fibronectin-binding protein A N-terminus (FbpA
        1.8    8.7   9.5        0.5   10.6   5.4    1.8  2  Metal_resist   Heavy-metal resistance


Domain annotation for each model (and alignments):
>> Ribosomal_S13  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         3   7.6e+03      55      55 ..      25      25 ..      10      40 .. 0.50
   2 !   23.5   0.1   2.2e-08   5.6e-05       3      53 ..      47      97 ..      45     104 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3
  Ribosomal_S13 55 e 55
                   +
     KIR61218.1 25 R 25
                   1 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 2.2e-08
  Ribosomal_S13  3 lgtdidgkkkveialtaikGiGrrkakiilkkadvdedkrigelteeeiek 53
                    g d+ gk kv+  l+a+ GiG+ +a++i++k+++  + r++ l e++ + 
     KIR61218.1 47 EGDDVVGKLKVSAVLQAMPGIGKIRATQIMEKLKIADSRRLRGLGEQQRKA 97
                   678999*************************************99998665 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.6     5e-06     0.013      20      56 ..      33      80 ..      28      80 .. 0.67
   2 ?   -1.9   0.0         2   5.2e+03       7      19 ..      87      99 ..      85     102 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5e-06
                TTT--SHHHHHHS-HHH...........HHTSTTS-HHHHHHHHHHHH CS
       HHH_5 20 saGiesvedlaaadvee...........LakipGiGkktAeriilelk 56
                ++G ++++++++ ++ +           L+++pGiGk +A +i++ lk
  KIR61218.1 33 KQGKTTLAAVLERAEGDdvvgklkvsavLQAMPGIGKIRATQIMEKLK 80
                5666677776654221113333444444*****************997 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
                STT--HHHHHHHH CS
       HHH_5  7 vsGiGpktAlall 19
                + G+G++  +all
  KIR61218.1 87 LRGLGEQQRKALL 99
                5688888888877 PP

>> CDC73_N  Paf1 complex subunit CDC73 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.6   1.9e-06    0.0047     123     195 ..      10      81 ..       1     101 [. 0.80

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.9e-06
     CDC73_N 123 kRsaeeasesaakkprveee.qvqkvkerlaarldaskkeevvttdqikslsealsaekiaaikakrlakkrkt 195
                 +R+a+ +++++ +k+r e + q+++ k+ laa l++++ + vv + +++++ +a++   i  i+a+++ +k k 
  KIR61218.1  10 QRAAALEKAAEIRKARAELKeQLKQGKTTLAAVLERAEGDDVVGKLKVSAVLQAMP--GIGKIRATQIMEKLKI 81 
                 465555568999999*997769*************************999999776..6999999999877654 PP

>> GldM_N  GldM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   1.1e-05     0.027      38     114 ..       7      80 ..       5     104 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
      GldM_N  38 npekakewlekAkevkkksdelynyiealKeeivkeaggkdedvgeikakdnldaaselmlaegksgkGkeLkkkin 114
                 +pe+ +++lekA e++k+ +el +++++ K+++++  +  ++d  ++  k +  a+ + m   g + ++ ++++k++
  KIR61218.1   7 TPEQRAAALEKAAEIRKARAELKEQLKQGKTTLAAVLERAEGD--DVVGKLKVSAVLQAMPGIG-KIRATQIMEKLK 80 
                 5889999*******************************99888..6666666666666666333.556666666665 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.8   0.00013      0.34       6      43 ..      10      47 ..       9      48 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
      TPR_14  6 alaeallalGdpdeAiallrralalaPddaeawlllaq 43
                ++a+al+ + + ++A+a l++ l+++ + ++a l+ a+
  KIR61218.1 10 QRAAALEKAAEIRKARAELKEQLKQGKTTLAAVLERAE 47
                689****************************9999885 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   1.8     0.021        53     376     412 ..       6      41 ..       3      49 .. 0.62
   2 ?    6.9   0.0   0.00089       2.3     190     235 ..      57     102 ..      47     104 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.021
                 ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        FbpA 376 kspsenAqkyfkkykKlkraveaveeqieetkeeley 412
                 ++p + A ++ +k+  +++a+++++eq+++ k  l+ 
  KIR61218.1   6 LTPEQRAAAL-EKAAEIRKARAELKEQLKQGKTTLAA 41 
                 5555555554.66666777777777777766666554 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00089
                 HHHHHHHBTTXXHHHHHHHHTTXSSSH...............HHHH CS
        FbpA 190 vkaLvkafqGlspllaeelleragldketsakelseedlerlyeal 235
                 v a ++a+ G+++  a +++e++++++  +++ l e++ ++l  ++
  KIR61218.1  57 VSAVLQAMPGIGKIRATQIMEKLKIADSRRLRGLGEQQRKALLGEF 102
                 56789999*******************************9998776 PP

>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   5.4    0.0002       0.5      42      86 ..       5      49 ..       4      77 .. 0.90
   2 ?    0.3   0.1      0.29   7.6e+02      61      80 ..      83     102 ..      68     105 .] 0.50

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0002
                  -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSS CS
  Metal_resist 42 gLpaeqraelraalrdharelralrrelraarrelaallaaepfD 86
                   L++eqra++ + + + ++++ +l  +l + ++ laa+l + + D
    KIR61218.1  5 SLTPEQRAAALEKAAEIRKARAELKEQLKQGKTTLAAVLERAEGD 49
                  59*************************************998877 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.29
                   HHHHHHHHHHHHHHHHHHHH CS
  Metal_resist  61 elralrrelraarrelaall 80 
                   + r lr   +++r +l  ++
    KIR61218.1  83 DSRRLRGLGEQQRKALLGEF 102
                   33334444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1074  (0.059903); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 751.43
//
Query:       KIR61219.1  [L=177]
Description: guanylate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-14   53.6   0.0    2.7e-14   53.3   0.0    1.1  1  Guanylate_kin  Guanylate kinase


Domain annotation for each model (and alignments):
>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   1.5e-18   2.7e-14       2     123 ..      11     131 ..      10     138 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1.5e-18
                    SSEEEEESTTTSSHHHHHHHHHHHSTTTEEE--EEESS---TTS-TTTSEEE--HHHHHHHHHTTTEEEEEEETTEEEEEEHHHHHHHHHTTSEEE CS
  Guanylate_kin   2 rrpvvlvgpsgaGksslkkaLlselpekfgvsvshtTrdprkgevdGkdYyFvskeemekdiskneflEaaefsgnlygtsveaieevlekgkivi 97 
                    +r+ vl gpsgaG  s+ +   ++ p+   ++v+ tTr++r+gevdG d  F++  ++ + i++ ++lE+a+   +  gt    +   l+ g+ v+
     KIR61219.1  11 ARLTVLTGPSGAGVGSVVEPFRARSPS-VWIPVPATTRPRRAGEVDGVDRVFLAPAAFDRLIAAGQLLEWARIGPYARGTPAPPVAGRLAAGRPVL 105
                    5899*********99999987766665.569***************************************************************** PP

                    EE--CHHHHHHHHTTTTEEEEEEEES CS
  Guanylate_kin  98 LDvdiqavkqlrkaelspiivFikpp 123
                    L  d+ ++  +r+a++ ++ v ++pp
     KIR61219.1 106 LPLDLPGALAVRAAHPDARLVLLAPP 131
                    *********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       183  (0.0102069); expected 358.6 (0.02)
Passed bias filter:                      136  (0.00758548); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1306.95
//
Query:       KIR61220.1  [L=87]
Description: DNA-directed RNA polymerase subunit omega [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-13   49.0   0.1    5.9e-13   48.5   0.1    1.1  1  RNA_pol_Rpb6  RNA polymerase Rpb6


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb6  RNA polymerase Rpb6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.1   3.3e-17   5.9e-13       1      47 [.      17      79 ..      17      80 .. 0.78

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 3.3e-17
                  HHTTSS--HHHHHHHHHHHHHHH.....HT................SS-SSSSTTCHHHHTT-S CS
  RNA_pol_Rpb6  1 rltskvltrYelvriaakRArQieeg.esl................etqkpvviAlrEiaegki 47
                  +l++k+ ++Y lv+ aakRArQ ++  + +                  +kp++iA+rEi +g++
    KIR61220.1 17 ELLEKTTSKYALVIFAAKRARQVNAYyS-QlgeglleyvgplvettPQEKPLSIAMREINAGLL 79
                  69*********************77433.12334556677888675245*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 622.55
//
Query:       KIR61221.1  [L=412]
Description: phosphopantothenoylcysteine decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-66  221.4   1.6    8.4e-66  221.4   1.6    1.9  2  DFP            DNA / pantothenate metabolism flavoprotein
      2e-38  131.6   0.0    4.6e-38  130.4   0.0    1.6  2  Flavoprotein   Flavoprotein
     0.0058   17.0   1.0        3.1    8.3   0.6    3.8  2  NAD_binding_7  Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.23   1.4e+03      80      95 ..      73      89 ..      19      96 .. 0.63
   2 !  221.4   1.6   1.4e-69   8.4e-66       1     186 []     185     368 ..     185     368 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.23
                H.TT-SEEEE---S--E CS
         DFP 80 l.keadivimaAAvaDy 95
                l ++ad+v++a A aD 
  KIR61221.1 73 LgQRADLVVVAPATADL 89
                23667999999999996 PP

  == domain 2  score: 221.4 bits;  conditional E-value: 1.4e-69
                 TTT-EEEEEES-EEEECCTTEEEEE----HHHHHHHHHHHHTT-EEEEEE-S-SS---TT-EEEE--SHHHHHHHHHHHHTT-SEEEE---S--EEES- CS
         DFP   1 legkkvlvtaGpTrEaiDpVRfisNrSSGkmGyalAeaaaarGaeVtlvsgpvsletpegvevvkvesaeemleaveealkeadivimaAAvaDyrpke 99 
                 l+g++v+vtaG+TrE++DpVRf++NrSSGk+Gya A+ a+arGa+Vtlv+++v+l++p+gv++v+v ++ee++ea+ +a++ ad+v+maAA aD+rp++
  KIR61221.1 185 LAGRHVVVTAGGTREPLDPVRFLGNRSSGKQGYAFARSAVARGARVTLVAANVALADPAGVDLVRVGTTEELREATLRAAAGADAVVMAAAPADFRPAT 283
                 689************************************************************************************************ PP

                 ------------..----EEE---HHHHHHHC-S.S-EEEEEEE-SS-HHHHHHHHHHHTT-SEEEEEEGGGTTGGG-SS-EEEEE. CS
         DFP 100 aaeeKikkeeeeeeltleleknpdilaelaekkkkkqllvGFaaeteellenareklerkgldlivaNdvskeeagfgsdenevtll 186
                  ++ Kikk+++   +t++l+ npdi ael+++++++q+lv Faaet+++++n+r+kl+rk++dliv+N+v+ + ++fg+++n++t++
  KIR61221.1 284 YTSAKIKKTAA-GAPTIDLVTNPDIAAELGRQRRPEQVLVVFAAETDDAEANGRAKLARKRADLIVINEVGPD-KVFGAETNAATVI 368
                 ********665.58*********************************************************75.*********9986 PP

>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.0   7.7e-42   4.6e-38       2     156 ..       4     173 ..       3     175 .. 0.93
   2 ?   -2.5   0.0      0.64   3.8e+03      93     108 ..     260     275 ..     223     321 .. 0.62

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 7.7e-42
                   EEEEEE-SSCGGGCHHHHHHHHHHTTEEEEEEESCHHHHCCHHGGS................TCSSHHHHHHCTTESEEEEEEEEHHHHHHHHTT-- CS
  Flavoprotein   2 killgiTGsvaaikalellekLkkegievqvvltkaAkkfiskeklklaa............redpilhielrrwadllviaPasantlakianGia 86 
                   +i+lg+ G++aa+ka ell+ + ++g++v+vv t++A +f+     ++aa               ++ h+ l ++adl+v+aPa+a+ la+ a+G+a
    KIR61221.1   4 EIVLGVGGGIAAYKACELLRLFTESGHRVRVVPTASALRFVGA--PTWAAlsgqpvaddvwaDVHEVPHVRLGQRADLVVVAPATADLLARAAHGLA 98 
                   69****************************************4..4555577999999***98899******************************* PP

                   SSHHHHHHHTHCCTTEEEEE.--HHCCTCSTCHHHHHHH.HT.....................GHHHHHHHHHHCH CS
  Flavoprotein  87 dnlltlilratakkpiliaPamnpamyenpqtlknlekl.eegvtvikPse.....gdigkgkmaeieeivgkild 156
                   d+llt++l +ta+ p+l+aPam+++m+e+p+t+ n+++l ++gv v++P+       d+gkg++++++ei+   ++
    KIR61221.1  99 DDLLTNTL-LTARCPVLLAPAMHTEMWEHPATVANVATLrSRGVRVVEPAVgrltgADTGKGRLPDPAEIFAVARR 173
                   ********.7888**************************66*********779**99************9987665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.64
                   HHHTHCCTTEEEEE.- CS
  Flavoprotein  93 ilratakkpiliaPam 108
                   +lra+a + ++++ a+
    KIR61221.1 260 TLRAAAGADAVVMAAA 275
                   3333333333333222 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.013        79      13      80 ..       9      95 ..       1     200 [. 0.67
   2 !    8.3   0.6   0.00052       3.1      23      84 ..     220     342 ..     212     358 .. 0.49

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.013
  NAD_binding_7 13 vGgGevAarkv....rklleagakvtvvapev.keele.....elvklaeeelekd.............legadlviaatddrelneriae 80
                   vGgG +Aa k+    r + e+g +v vv  ++               l+ + + +d              ++adlv++a+  ++l +r a+
     KIR61221.1  9 VGGG-IAAYKAcellRLFTESGHRVRVVPTASaL---RfvgapTWAALSGQPVADDvwadvhevphvrlGQRADLVVVAPATADLLARAAH 95
                   4544.44444411113445677888887666421...223333223333333333333333444444435557777777777666655554 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00052
  NAD_binding_7  23 vrklleagakvtvvapevkeele...elvklaeee..........................................................lek 57 
                    +r+ ++ ga+vt+va +v+ + +   +lv++  +e                                                           ++
     KIR61221.1 220 ARSAVARGARVTLVAANVALADPagvDLVRVGTTEelreatlraaagadavvmaaapadfrpatytsakikktaagaptidlvtnpdiaaelgRQR 315
                    778888999999999998555444553333321112222333333344444444444444444444444333333333333333333222211122 PP

  NAD_binding_7  58 dlegadlviaatddrelneriaeaaka 84 
                      e++ +v+aa +d+++ +  a++a++
     KIR61221.1 316 RPEQVLVVFAAETDDAEANGRAKLARK 342
                    255566666666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2701.19
//
Query:       KIR61222.1  [L=397]
Description: S-adenosylmethionine synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-67  224.0   0.0    8.4e-67  223.4   0.0    1.3  1  S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal 
    4.4e-44  149.6   0.0    1.3e-43  148.1   0.0    1.8  2  S-AdoMet_synt_M  S-adenosylmethionine synthetase, central dom
    1.3e-40  138.1   0.1    2.8e-40  137.0   0.1    1.6  1  S-AdoMet_synt_N  S-adenosylmethionine synthetase, N-terminal 


Domain annotation for each model (and alignments):
>> S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.4   0.0   1.4e-70   8.4e-67       1     137 [.     245     383 ..     245     384 .. 0.99

  Alignments for each domain:
  == domain 1  score: 223.4 bits;  conditional E-value: 1.4e-70
                      S-TTTTS-EETTS-TTTTTTTTSS---S---TTB-TTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEE-TT-SS-SEEEEEE-S-BSS-HHHH CS
  S-AdoMet_synt_C   1 iGgpkgdaGltgrkiivdtYgglaahgggafsgKdptkvDrsaayaaryvaknlvaaglakkvevqlsYaigvaepvsisvetfgtekvseeei 94 
                      iGgp+gdaGltgrkiivdtYgg+a+hgggafsgKdp+kvDrsaaya r+vakn+vaagla+++e q++Yaig a+pvs+++etfgte+v+ ++i
       KIR61222.1 245 IGGPMGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLAERCEAQVAYAIGKAHPVSLFIETFGTETVPVASI 338
                      8********************************************************************************************* PP

                      HHHHHHH----HHHHHHHHTTTSS--TGGGSS-SSS--..T-TTS CS
  S-AdoMet_synt_C  95 aeivkevfdlrpaaiieeldLkkpiykktaayghfgre..elpwe 137
                      +++v+evfdlrpaaii++l+L +piy++taayghfgre  el+we
       KIR61222.1 339 EKAVTEVFDLRPAAIIRDLHLLRPIYRQTAAYGHFGRElpELTWE 383
                      *************************************98899**9 PP

>> S-AdoMet_synt_M  S-adenosylmethionine synthetase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.73   4.3e+03      47      60 ..      31      44 ..      13      72 .. 0.67
   2 !  148.1   0.0   2.1e-47   1.3e-43       2     120 .]     125     243 ..     124     243 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.73
  S-AdoMet_synt_M 47 ylrpDaKsqvtveY 60
                      l +Da s+v ve 
       KIR61222.1 31 LLAQDAHSRVAVET 44
                     35666666666664 PP

  == domain 2  score: 148.1 bits;  conditional E-value: 2.1e-47
  S-AdoMet_synt_M   2 igAgDqGimfGYAtdeteelmPlpillahklaerlaelrkegeleylrpDaKsqvtveYeeelkpvrvdtvvistqhdeevsq.eklredlkek 94 
                      +gAgDqG+mfG+A++et+elmPlpi+lah+la+rl+++rk+g+++ylrpD+K+qvt+eY e l+pvr++tvv+s qh++++s  + l+ d++++
       KIR61222.1 125 QGAGDQGMMFGFACSETPELMPLPIALAHRLARRLTAVRKDGTIPYLRPDGKTQVTIEY-EGLRPVRLNTVVVSSQHAADISLdSLLTPDVRDH 217
                      8**********************************************************.59***************999986367899***** PP

  S-AdoMet_synt_M  95 vikkvlkeelldekktkllinptGkF 120
                      vi++ l++  ld++ ++ll+nptG+F
       KIR61222.1 218 VIAPELESLGLDTDGYRLLVNPTGRF 243
                      ******655678889**********9 PP

>> S-AdoMet_synt_N  S-adenosylmethionine synthetase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   0.1   4.6e-44   2.8e-40       2      99 .]       4     101 ..       3     101 .. 0.99

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 4.6e-44
  S-AdoMet_synt_N   2 ylftsesVseGHPDkvadqisdaildailkedpkarvacetlvttglvvvageittkakvdiekivrevikeigYekeelgfdaktcevlvale 95 
                       lftsesV+eGHPDk+adqisd ilda+l++d ++rva+etl+ttg+v+vage+ttka++di +ivre+i +igY+++++gfd  +c v v++ 
       KIR61222.1   4 RLFTSESVTEGHPDKIADQISDGILDALLAQDAHSRVAVETLITTGQVHVAGEVTTKAYADIPTIVRETILDIGYDSSKKGFDGASCGVSVSIG 97 
                      69******************************************************************************************** PP

  S-AdoMet_synt_N  96 eqsp 99 
                      +qsp
       KIR61222.1  98 AQSP 101
                      ***7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2909.79
//
Query:       KIR61223.1  [L=327]
Description: cytidylate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-18   66.5   0.0    5.1e-18   65.9   0.0    1.3  1  AAA_18           AAA domain
    1.3e-10   41.7   0.3    2.6e-08   34.2   0.2    2.6  2  Cytidylate_kin2  Cytidylate kinase-like family
    2.8e-09   37.0   0.2      4e-05   23.4   0.0    2.2  2  Cytidylate_kin   Cytidylate kinase
      6e-07   30.0   0.1    2.7e-06   27.8   0.1    2.0  2  AAA_17           AAA domain
    1.3e-05   25.4   0.4    3.3e-05   24.1   0.4    1.8  1  AAA_33           AAA domain
    0.00027   21.1   0.1    0.00044   20.4   0.1    1.4  1  SKI              Shikimate kinase
     0.0011   18.4   0.1       0.12   11.6   0.0    2.2  2  Zeta_toxin       Zeta toxin
     0.0017   18.4   0.0      0.003   17.7   0.0    1.4  1  ADK              Adenylate kinase
      0.004   17.4   0.0      0.014   15.6   0.0    1.9  2  ParBc            ParB-like nuclease domain
     0.0054   16.7   0.1      0.012   15.6   0.0    1.6  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
  ------ inclusion threshold ------
       0.13   12.0   0.0        1.9    8.3   0.1    2.4  2  AAA_29           P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   3.1e-21   5.1e-18       1     122 [.       7     126 ..       7     140 .. 0.91

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 3.1e-21
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.....gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaakdi 94 
                 I+ +G  G+GK+t++ e++krlg+     g+ +r++a+e+++   + +     + +ld+ ++ ++ ++ + +++   +g++lv+d++la++++++a + 
  KIR61223.1   7 IVFNGDLGSGKSTVSVEIAKRLGLrrvsvGDLYRQMAQERQMTALQLNL----HAELDQAVDGYVDQLQQDIAA---SGESLVMDSRLAWHFFTDALK- 97 
                 899*******************99*************************....999999999999999999875...9****************9997. PP

      AAA_18  95 kkvvLtaspeelleRlekRgyeeakik...e 122
                   v++ ++p e ++R+ +R   +a+ +   e
  KIR61223.1  98 --VHMITEPTEAARRVLARPSGPAESYaslE 126
                 ..*******************9999876442 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.2   1.6e-11   2.6e-08       4     178 ..       9     164 ..       6     165 .. 0.87
   2 ?   -1.9   0.0         2   3.2e+03      99     114 ..     178     193 ..     167     195 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 1.6e-11
  Cytidylate_kin2   4 IsreyGsgGetigeaLAekLglpfydr.eiieevakelglseeeveevdersrlssflskllaarvagdtldeklddelfeaqervirela.ae 95 
                      +++++Gsg++t+  ++A++Lgl+ ++  ++ +++a+e +++  ++  + e   l+++                  d ++ + q++    +a ++
       KIR61223.1   9 FNGDLGSGKSTVSVEIAKRLGLRRVSVgDLYRQMAQERQMTALQLNLHAE---LDQA-----------------VDGYVDQLQQD----IAaSG 78 
                      67899*********************99*****************99999...3333.................33344444444....44456 PP

  Cytidylate_kin2  96 esvVivGRgadliLkdrpnvlrvfltapledrvkrvaeregl......seeearekiketDkrrakyykkytgqdwgdaenYdlvlnts 178
                      es V+  R a+++++d   +l+v  + +  + ++rv +r +       s eear k++e+ + ++ ++   +g d ++ +nYdl+ +++
       KIR61223.1  79 ESLVMDSRLAWHFFTD---ALKVHMITEPTEAARRVLARPSGpaesyaSLEEARAKLRERSESERGRFIVRYGVDKARLRNYDLICDST 164
                      7***************...9****************99996669988889***********************************9987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
  Cytidylate_kin2  99 VivGRgadliLkdrpn 114
                      V+ GR ++ +L+d p 
       KIR61223.1 178 VYEGRLGADVLRDAPP 193
                      899*********9885 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.5e-08     4e-05       3      41 ..       9      47 ..       7      64 .. 0.83
   2 !   12.0   0.0   7.8e-05      0.13      98     208 ..      63     178 ..      56     181 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.5e-08
                    EE-STTSSHHHHHHHHHHHHT-EEEEHHHHHHHHHHHHH CS
  Cytidylate_kin  3 iDGPagsGKssvaralaeklglkyldtgalYRalalaal 41
                      G  gsGKs+v+ ++a++lgl+ ++ g lYR++a   +
      KIR61223.1  9 FNGDLGSGKSTVSVEIAKRLGLRRVSVGDLYRQMAQERQ 47
                    56888****************************996654 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 7.8e-05
                     HHHHHHHHHHTT-B.SSBEEEEESSIIIIISTT-SEEEEEE--HHHHHHHHHHHHHHTT--.--HHHHHHHHHHHHHHHHCTS.....SS-S--- CS
  Cytidylate_kin  98 vRailvkklrelvk.karvvveGRDigtvvfpdaelKifldAsveeRakRRlkqlkakgts.vsleellaeikeRDklDkere.....vgpLkla 185
                     v  ++ +++++++   +++v++ R ++ + f da lK+++   + e a+R l+  +    s  slee  a+++eR +  + r      v++ +l 
      KIR61223.1  63 VDGYVDQLQQDIAAsGESLVMDSR-LAWHFFTDA-LKVHMITEPTEAARRVLARPSGPAESyASLEEARAKLRERSESERGRFivrygVDKARLR 155
                     5667889999998878999***99.89999**99.9********9999888888777777778999999*********99996221124555566 PP

                     TT-EEEETTTS-HHHHHHHHHHH CS
  Cytidylate_kin 186 edaliidtskltieevvekilel 208
                     +  li d+++   e+v+ +i++ 
      KIR61223.1 156 NYDLICDSTRANPEQVIGHIIDV 178
                     67799999999999999999976 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1   1.7e-09   2.7e-06       5      97 ..      14     101 ..      11     143 .. 0.75
   2 ?   -0.9   0.0       1.3   2.1e+03      74      93 ..     244     261 ..     235     270 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.7e-09
                 TSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTS.HSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSHHHHH CS
      AAA_17   5 GsGKgtqceklvekygfthlsaGdllreeakrggl.akardemrklpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldglpkevl 97 
                 GsGK+t++ ++++++g+  +s Gdl r++a+++++ a + +  ++l++ ++  + ++++++ia   + + +++d    +   + f d l+++++
  KIR61223.1  14 GSGKSTVSVEIAKRLGLRRVSVGDLYRQMAQERQMtALQLNLHAELDQAVD-GYVDQLQQDIAA--SGESLVMDSRLAW---HFFTDALKVHMI 101
                 9********************************983333333335554444.455566667775..3556777776653...556666666665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.3
                 EEEEE-SEEEETTEEEESSH CS
      AAA_17  74 vlvdghprikeqagfldglp 93 
                 ++vdgh r+  +a +++g+p
  KIR61223.1 244 FVVDGHRRL--SAAIRSGFP 261
                 89*****97..456666665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.4     2e-08   3.3e-05       2      78 ..       7      86 ..       7     160 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 2e-08
      AAA_33  2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqskt...dytrvldrlyqilnelarkalsagrnvildat 78
                +++ G  GsGKst++ +++k+lg  ++s  +l+r+++ + q +       +++ + + + + +l ++ +++g +++ d+ 
  KIR61223.1  7 IVFNGDLGSGKSTVSVEIAKRLGLRRVSVGDLYRQMAQERQMTALqlnLHAELDQAVDGYVDQLQQDIAASGESLVMDSR 86
                6789999******************************9877766511133346666777777777777788888888765 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   2.7e-07   0.00044       2     129 ..      14     137 ..      13     180 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.7e-07
                 TSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSSEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHHH CS
         SKI   2 GaGKstvGkllAkklglefiDlDeliekrtgksiaeifeeegeegFrelEsevlkelleeeglViatGGGavlseenrellkekgiviyLdvsleelle 100
                 G+GKstv  ++Ak+lgl+ + + +l  + ++ +  + ++ +  ++  +     +++l    + + a G + v++++  ++  + ++ +++ ++++e ++
  KIR61223.1  14 GSGKSTVSVEIAKRLGLRRVSVGDLYRQMAQERQMTALQLNLHAELDQAVDGYVDQLQ---QDIAASGESLVMDSRLAWHFFTDALKVHMITEPTEAAR 109
                 9*************************99999999999997755555554455555555...55*************9999999**************** PP

                 HHHHTTSSGGGCSCHHHHHHHHHHHHHHH CS
         SKI 101 rlkadkeRPllqekskeeelleelaerep 129
                 r+ a+++ P+ +  s  ee + +l+er +
  KIR61223.1 110 RVLARPSGPAESYASL-EEARAKLRERSE 137
                 *******898887777.444444444433 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   7.3e-05      0.12      19     105 ..       7      88 ..       4      97 .. 0.87
   2 ?    4.5   0.0     0.011        18      75     111 ..     136     172 ..     120     182 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.3e-05
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldpDdlRelhPeyeeilkadpkkaseltqkdaselvekllqeaiengyniivegtlr 105
                 i+  G  G+GKs+++ +++++l  + + v + +D +R++  e ++ + a + +  +  ++++   v++l q ++  g ++++++ l+
  KIR61223.1   7 IVFNGDLGSGKSTVSVEIAKRL--GLRRVSV-GDLYRQMAQE-RQ-MTALQLNLHAELDQAVDGYVDQLQQDIAASGESLVMDSRLA 88 
                 777899****************..6777776.7******965.55.677888899999999*********************99775 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.011
  Zeta_toxin  75 ltqkdaselvekllqeaiengyniivegtlrspdvvk 111
                   ++  + +v+  +++a  + y++i ++t ++p++v 
  KIR61223.1 136 SESERGRFIVRYGVDKARLRNYDLICDSTRANPEQVI 172
                 5556667777888999*****************9875 PP

>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.9e-06     0.003       3      40 ..      11      48 ..       9      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.9e-06
                ESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHCT-H CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  3 GaPgaGKGtqaeklvkkyglahlstGdllRaevksgte 40
                G  g+GK t++ +++k++gl ++s Gdl R+  ++   
  KIR61223.1 11 GDLGSGKSTVSVEIAKRLGLRRVSVGDLYRQMAQERQM 48
                6679**************************98876544 PP

>> ParBc  ParB-like nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.8   4.6e+03      82      82 ..      47      47 ..      23      79 .. 0.55
   2 !   15.6   0.0   8.8e-06     0.014      38      74 ..     233     268 ..     218     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.8
       ParBc 82 m 82
                +
  KIR61223.1 47 Q 47
                2 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 8.8e-06
       ParBc  38 PiivrktrqgryeiiaGerRlrAakrlglkevpvivl 74 
                 P+++  t ++++ +++G+rRl Aa r g   vp+++ 
  KIR61223.1 233 PLTIGFT-GEYFFVVDGHRRLSAAIRSGFPLVPARLV 268
                 5555555.4899****************888998865 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.3e-06     0.012      20      48 ..       5      33 ..       1      37 [. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.3e-06
                EEEEEEESTTSSHHHHHHHHHHHTT---- CS
        TsaE 20 dvilLeGdLGaGKTtlvrglakalgveev 48
                + i+++GdLG+GK+t + ++ak lg+++v
  KIR61223.1  5 QSIVFNGDLGSGKSTVSVEIAKRLGLRRV 33
                5699********************99866 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1    0.0012       1.9      24      38 ..       6      20 ..       1      21 [. 0.82
   2 ?    0.7   0.0      0.27   4.5e+02       6      30 ..     294     316 ..     291     318 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0012
      AAA_29 24 atlltGpsGsGKSTl 38
                ++++ G+ GsGKST+
  KIR61223.1  6 SIVFNGDLGSGKSTV 20
                57899*********6 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.27
      AAA_29   6 lvNWgtfdghtieidlkgatlltGp 30 
                 +++W   +g t+++  +  +ll+G+
  KIR61223.1 294 VYDWEAAHGITLPLP-AH-CLLAGD 316
                 89*******999997.43.899987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2319.33
//
Query:       KIR61224.1  [L=185]
Description: peptide deformylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-39  134.8   0.0    2.3e-39  134.6   0.0    1.1  1  Pep_deformylase  Polypeptide deformylase


Domain annotation for each model (and alignments):
>> Pep_deformylase  Polypeptide deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.0   1.3e-43   2.3e-39       2     156 ..       4     148 ..       3     151 .. 0.97

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 1.3e-43
                      GG---TT-GGGCS--B---BSSHHHHHHHHHHHHHHHHHCT-SEEEGGGGT--BSEEEEECCSS-ETT....SEEEEEEEEEEECSCEEECCEE CS
  Pep_deformylase   2 kkivkvgdpvLrekakpvekfeskelekllekmletmkeakgvgLAApQigvnkrlfvielpseeeeeeenkeltvliNPkitskseetitdeE 95 
                      ++i  +gdpvLr++a+pv +f+ + l++l++++ +tm+e++g gLAApQ gv  r+f +++++  +          l+NP ++  + e ++  E
       KIR61224.1   4 QPIRLFGDPVLRTPADPVVDFDAE-LRRLVADLTDTMREQSGAGLAAPQLGVGLRVFTFDVDDVLG---------HLVNPVLEFPDAEEQDGPE 87 
                      689999***************977.**************************************999.........6****************** PP

                      --TTSTT--CEEEEESCEEEEEE-TTS-EEEEEEEHHHHHHHHHHHHHCTT--GGGGC-TT CS
  Pep_deformylase  96 gClSvpgieakVeRskrikvkyldltgkeveleaegllArvlqHEiDhlnGklfidridks 156
                      gClS+pg++ + +R +++  k+++  g++v++  +gl+Ar++qHE+Dhl+G+lf+dr+d+ 
       KIR61224.1  88 GCLSIPGLYFDTKRRQNVVAKGFNSYGDPVQIVGTGLMARCVQHETDHLDGVLFVDRLDPA 148
                      **********************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1374.68
//
Query:       KIR61225.1  [L=308]
Description: methionyl-tRNA formyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-34  119.7   0.0    1.5e-34  119.3   0.0    1.1  1  Formyl_trans_N  Formyl transferase
    2.6e-19   69.3   0.0    4.3e-19   68.6   0.0    1.4  1  Formyl_trans_C  Formyl transferase, C-terminal domain
  ------ inclusion threshold ------
          2    9.0   8.0         15    6.3   0.2    3.9  3  LRV             Leucine rich repeat variant


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   0.0   2.5e-38   1.5e-34       3     181 .]       3     180 ..       1     180 [. 0.95

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 2.5e-38
                     EEEEESESSHHHHHHHHHHHHTTSECEEEEEEESCTTEHCHHHHHHCCHCCCECHHCC...SCCCCCCCHHHHHHHHCTT-SEEEEES--S---H CS
  Formyl_trans_N   3 ivvlisgtgsnlqalldalkkgsleadvvlvvsnkdkaaglekaeaasiptkvfeekk...leprsqfeeelaeelkelkadlivlagymkllpk 94 
                     +++   gt+  +   lda   ++++   v+vv+++d +ag+++    s++   ++e +   l+p + +e+e+ + l++l++d + +++y+ l+p+
      KIR61225.1   3 LIFA--GTPAVALPALDAIAASGHD--LVAVVTRPDAPAGRGRGLVRSPVGAWADERGvevLTPARPREPEFLDRLRALAPDCVPVVAYGALVPP 93 
                     4554..8888888889999999996..*****************************999999********************************* PP

                     HHHHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--SSSSTS-EEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHH CS
  Formyl_trans_N  95 elvqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvdeelDtGailaqkkveiiaedtkeeleqrvadaehkalveal 181
                       ++ +r++ +n+H SLLP+++Gaa++q+a+++Gd+ tG++++ ++e+lDtG+++     ei ++dt+++l +r+a+ ++ +lv +l
      KIR61225.1  94 VALEIPRHGWINLHFSLLPAWRGAAPVQQAVLHGDELTGASVFALEEGLDTGPVYGTVTDEIRPTDTSGDLLERLAHSGSGLLVAVL 180
                     *******************************************************************************99999875 PP

>> Formyl_trans_C  Formyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   7.2e-23   4.3e-19       1      99 [.     203     299 ..     203     300 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 7.2e-23
                     ..-GGGGB--TTSBHHHHHHHHHHT-TS--EEEEETTEEEEEEEEEEE-S--SS-.TTSEEETT..TEEEE-SBSEEEEEEEEETTS--EEHHHH CS
  Formyl_trans_C   1 kikkedgridwnqsaeeihnlvrglspwPgayttlngkrvkllkaevvsesssaespGtivavdkggllvacgdgallilelqlegkkamsaedf 95 
                     k++ +d+r+ w ++a ++++++r+++p Pg +tt++g+rvkl  + +v +  + + pG+++a +k+++l ++++ ++ + e++++gkkam+a+d+
      KIR61225.1 203 KLTVDDARVRWGDPAFAVDRRIRACTPAPGPWTTFRGERVKLGPVVPVPDGPDLK-PGELLA-EKSRVLAGTATVPVALGEVRAAGKKAMPASDW 295
                     7899********************************************9999999.**9998.7788**************************** PP

                     HHH. CS
  Formyl_trans_C  96 lngl 99 
                     ++g+
      KIR61225.1 296 ARGA 299
                     **97 PP

>> LRV  Leucine rich repeat variant
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2    0.0024        15       6      17 ..      28      39 ..      26      46 .. 0.91
   2 ?   -0.7   0.6       0.4   2.4e+03      16      24 ..      72      80 ..      71      80 .. 0.88
   3 ?    4.8   0.1    0.0072        43      12      23 ..     159     170 ..     158     172 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0024
         LRV  6 aVArrPdlPpea 17
                aV++rPd+P+++
  KIR61225.1 28 AVVTRPDAPAGR 39
                9********985 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.4
         LRV 16 eaLerLahD 24
                ++L++La D
  KIR61225.1 72 DRLRALAPD 80
                89*****98 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0072
         LRV  12 dlPpeaLerLah 23 
                 d++++ LerLah
  KIR61225.1 159 DTSGDLLERLAH 170
                 699********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2162.48
//
Query:       KIR61226.1  [L=510]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-43  149.1   0.0    1.8e-43  148.5   0.0    1.2  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    2.8e-25   89.1   0.0    4.3e-25   88.5   0.0    1.2  1  NusB             NusB family
  ------ inclusion threshold ------
       0.04   14.6   0.0       0.16   12.6   0.0    2.1  1  Methyltransf_11  Methyltransferase domain
      0.056   13.1   0.0      0.099   12.3   0.0    1.3  1  Cons_hypoth95    Conserved hypothetical protein 95
      0.066   13.3   0.0       0.78    9.8   0.0    2.4  2  FtsJ             FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5   0.0     5e-47   1.8e-43       9     200 .]     316     508 ..     306     508 .. 0.86

  Alignments for each domain:
  == domain 1  score: 148.5 bits;  conditional E-value: 5e-47
                      T-EEEESS-TTSHHHHHHHHH.TTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHH..HCC..EEEEEEEE--CCGGGTTT-T CS
  Methyltr_RsmB-F   9 eetilDlcaaPGgKTthiael.mknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkv..lggelfDriLlDaPCsgtgvirrdp 99 
                      + ++lDlca+PGgK  ++ +l  +  ++++Av+++++R++ v + +++L+vt   vl++D+r +  +  l + +fDr+L+DaPC+g+g++rr+p
       KIR61226.1 316 DAHWLDLCAGPGGKSGLLGALaAQRGARLTAVEVSEHRARLVGQATRGLPVT---VLHTDGRTVGADpeLPEGHFDRVLVDAPCTGLGALRRRP 406
                      568******************5666789************************...*******986551144589******************** PP

                      CHHHH--HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHHH-TT.EE.EESSBSTTSTTSSECEECTSEEE-TTTTSS CS
  Methyltr_RsmB-F 100 dvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkred.ve.lvetelsepkglklgeeagtlrllPhtenk 191
                      ++++r++++d+  l++lq+ellsaa+   ++gG + Y TCs +  E+   + ea ++    +  ++ ++l  +    lg +   ++l+Ph++ +
       KIR61226.1 407 EARWRKQPSDLPPLTRLQRELLSAALRAARPGGLVAYVTCSPHTVETHVTVTEAARRAGVpADfVDARPLLPAGMPGLGDGP-SVQLWPHRHGT 499
                      ***********************************************99999998876431331334455555566788888.9********** PP

                      -SEEEEEEE CS
  Methyltr_RsmB-F 192 dgffiaklk 200
                      d++f+a l+
       KIR61226.1 500 DAMFLAVLR 508
                      ******885 PP

>> NusB  NusB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.0   1.2e-28   4.3e-25       4     133 ..      65     184 ..      63     185 .. 0.97

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 1.2e-28
                 HHHHHHHHHHHHHH-S-HHHHHHHHHHHT-.......--HHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT--GGGS-HHHHHHHHHHHHHHTTS-SSHH CS
        NusB   4 RelalqalyqveinkedeeekeailqealnklleeedldeedkafltelvkgvlrnleelDeliekllknwplerlskvdraiLrlavyellylddvPa 102
                 R +a qa+ +v          +a+++ +l +ll++e+l  +d af+tel++g+lr+  +lD+++++ + ++++ r+++ +r +Lrl++y+ll++ +vPa
  KIR61226.1  65 RHVAYQAVAAV-------HRDDAYANLVLPALLRQERLTGRDAAFATELTYGTLRHIGTLDAILTDAA-GRDVARIDPPVRDALRLGAYQLLHT-RVPA 154
                 8999*******.......9***********************************************88.*************************.**** PP

                 HHHHH.HHHHHHHHS-HHHHHHHHHHHHHHH CS
        NusB 103 kvaineavelakkygdeksakFvNgVLrkva 133
                 ++a++ +v+l+++  +  +++F N+VLr+va
  KIR61226.1 155 HAAVSSTVDLVRAV-GIGATGFANAVLREVA 184
                 *************9.899**********986 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.5e-05      0.16       5      72 ..     326     397 ..     320     443 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.5e-05
                      -T..TSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTS....S-TT-EEEEEEES-CC CS
  Methyltransf_11   5 cG..tGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklp....fednsfDlvvssevlh 72 
                       G  +G+l +  a+rgar+++v++s+   +l+ +++++ +  v++++ d +++     ++++ fD v++    +
       KIR61226.1 326 PGgkSGLLGALAAQRGARLTAVEVSEHRARLVGQATRGLP--VTVLHTDGRTVGadpeLPEGHFDRVLVDAPCT 397
                      4432344444444888***********************9..9999999997432345*******999876555 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.8e-05     0.099      40     122 ..     314     395 ..     302     401 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.8e-05
                    HCC-EEEETT-T....TSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--S CS
  Cons_hypoth95  40 iegarvLDlfaG....sGalglEAlSRgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPP 122
                    + +a++LDl+aG    sG lg  A+ Rg ++ ++ve +++ ++++ +  + l +    ++l  d           +++fd v +D P
     KIR61226.1 314 GPDAHWLDLCAGpggkSGLLGALAAQRG-ARLTAVEVSEHRARLVGQATRGLPV----TVLHTDGRTVGADPELPEGHFDRVLVDAP 395
                    6789********77777789********.5899*********999999999984....44555555555555567889999999987 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.17     6e+02      27      41 ..     262     276 ..     231     303 .. 0.80
   2 ?    9.8   0.0   0.00022      0.78      21     129 ..     315     439 ..     297     458 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.17
                 ECT-TTSHHHHHHCC CS
        FtsJ  27 DlgaaPGgwsqvllq 41 
                 ++g aPG++s +++ 
  KIR61226.1 262 EVGGAPGAFSPYAVY 276
                 578899999988865 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00022
                 TT-EEEECT-TTSHHHHHHCCT.T..-SEEEEEESSSS.......HHH.TTEEEECS-CCCSSHHHHHCHCHHHSSEEEEEE--S-SS-CHHHHHHHHH CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlga.kgkvvavDlqpm.......apl.pgvttiqgditdpetiekikealserkvdlvvsDgapdvsgvhdldeylq 110
                 p+ + +Dl+a+PGg s  l     + ++++ av + +        a +   vt++++d ++  + +++ e      +d v+ D    ++g  +l    +
  KIR61226.1 315 PDAHWLDLCAGPGGKSGLLGALAAQrGARLTAVEVSEHrarlvgqATRgLPVTVLHTDGRTVGADPELPE----GHFDRVLVDAP--CTGLGALRRRPE 407
                 566789***********99777544469*******88855444432224466666777766666665554....45777777754..444322222222 PP

                 .............CCCCHHHHCCHCCCCECCC CS
        FtsJ 111 .............sqLllaalelalkllkpgg 129
                               +L +  l+ al+  +pgg
  KIR61226.1 408 arwrkqpsdlpplTRLQRELLSAALRAARPGG 439
                 23355555555544555666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3446.93
//
Query:       KIR61227.1  [L=296]
Description: hypothetical protein TK50_26200 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-49  168.2   0.0    2.3e-49  168.0   0.0    1.1  1  Septum_form  Septum formation


Domain annotation for each model (and alignments):
>> Septum_form  Septum formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.0   0.0   1.3e-53   2.3e-49       3     226 .]      50     272 ..      48     272 .. 0.97

  Alignments for each domain:
  == domain 1  score: 168.0 bits;  conditional E-value: 1.3e-53
  Septum_form   3 dCltwdesa.dasdlekVdCaeehrfevvaredlsaypgsefgagapppseeraaelaeelCeqavaeylggkldpagrfsigvilPseaaWaaGdRt 99 
                  +Cl   ++  +a+++e+VdCa++h++e+ +   ++ +++ +++ag +p+  +   ++a+++C+q+++e+lgg+++ ++r+s+ + lPs++aWa+G+R+
   KIR61227.1  50 ACLPRITAVvQAGTYETVDCARSHLAETIH---VGIFTDPAIDAGPRPEAGTPVLRVARAECDQRAREVLGGDWH-SARLSLTIALPSTSAWASGARW 143
                  688888877899******************...9*9***************************************.********************** PP

  Septum_form 100 lrCglqvtgssg..klvertgkvaeqdqskvaeagtClaikedk.kaev.dpVdCaepHaaevvgvvdladkfpdaypseeeqdeklekaCaaaaaeY 193
                  +rC+l++t+s +  ++v+r g+++++   +++ +++C++ k  + ++++ +pV C+epH+ae+vgv++ +d+   +++++ + ++k++++C+ ++ae+
   KIR61227.1 144 YRCDLSETDSIDntRPVNRVGSLRGAMIGDSPLTHRCFDPKLIGaNLNYmAPVLCTEPHRAEFVGVYTERDM---TWAEFIRSNQKVHRRCMGLIAEF 238
                  *********999899**************************9998888899*******************99...9********************** PP

  Septum_form 194 lggp..dklrkstltvfwstlseesWkaGsrkvnC 226
                  +++p  ++l ++++++f+++ s+++W++G+r+v+C
   KIR61227.1 239 AEVPnnSELPYRAGSIFYPP-SQREWDEGDRGVRC 272
                  ***98899************.************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2159.04
//
Query:       KIR61228.1  [L=226]
Description: ribulose-phosphate 3-epimerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-74  249.7   0.0    1.7e-74  249.6   0.0    1.0  1  Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
    0.00085   19.0   0.2     0.0016   18.1   0.2    1.5  1  OMPdecase       Orotidine 5'-phosphate decarboxylase / HUMPS 
     0.0017   17.9   0.1       0.12   11.9   0.1    2.1  2  His_biosynth    Histidine biosynthesis protein
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.022   14.5   0.0    1.5  1  QRPTase_C       Quinolinate phosphoribosyl transferase, C-ter


Domain annotation for each model (and alignments):
>> Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.6   0.0   3.7e-78   1.7e-74       2     198 .]       8     203 ..       7     203 .. 0.99

  Alignments for each domain:
  == domain 1  score: 249.6 bits;  conditional E-value: 3.7e-78
                     EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSS-B-B-HHHHHHHGGGE-S-EEEEEESSSHHHCHHHHHHCT-SEEEEE-ST-TTHHH CS
  Ribul_P_3_epim   2 iapSllsadfarlgeevkaveeagadllHvDvmDghfvpNltigplvvealrkltelpldvHLmveevdrivpefaeagasiisvHaEalehlkr 96 
                     iapS+l+adfarl+eev+ave a ad+lHvDvmD+hfvpNltig  vv++lr+ telp+dvHLm++++ r++p +a+aga+++++HaEa++++  
      KIR61228.1   8 IAPSILAADFARLAEEVRAVEGA-ADWLHVDVMDNHFVPNLTIGLPVVQSLRAATELPFDVHLMITDPRRWAPGYADAGAHNVTFHAEACDNPVS 101
                     9*******************966.*********************************************************************** PP

                     HHHHHHHTTSEEEEEE-TT--GGGGTTTCCC-SEEEEESS-TT-SS----CCHHHHHHHHHHHHHHHT---EEEEESS--TTTCHHHHHHT--EE CS
  Ribul_P_3_epim  97 tiqeikeaGakaglvlnpatplealeyllekldlvllmsvePgfgGQkFipevlekikkvrklidekeldlkievDGGvkldnieqiaeagadvl 191
                     + +++++aGakagl+++  tp+e + +ll+++d++l+m+++ gfgGQ+Fipe+l+k++++r+ +d+ +l+l+ievDGG+ +d+ieq+a+agad++
      KIR61228.1 102 LAKDLRAAGAKAGLAIDRDTPIEPYLELLPSFDTLLIMTIKAGFGGQRFIPELLDKVRAARRHVDAGHLELRIEVDGGIAADTIEQAAAAGADAF 196
                     *********************************************************************************************** PP

                     EESHHHH CS
  Ribul_P_3_epim 192 Vagsavf 198
                     Vag+av+
      KIR61228.1 197 VAGTAVY 203
                     *****98 PP

>> OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.2   3.5e-07    0.0016     184     224 ..     175     214 ..     149     215 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.5e-07
                 EECTTCCGGGHHHHHHHTTCSEEEESHHHHTSSSHHHHHHH CS
   OMPdecase 184 gdgkgqqyntpekligiagadiiivGRgIlkagdpveeaer 224
                 ++ +g+  +t+e+++  agad +++G ++++a+dp+e+++r
  KIR61228.1 175 EVDGGIAADTIEQAAA-AGADAFVAGTAVYGAEDPAEAVRR 214
                 6678999999999988.99********************98 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0057        26      31     129 ..      17     118 ..      11     130 .. 0.75
   2 !   11.9   0.1   2.6e-05      0.12      70     106 ..     168     203 ..     131     217 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0057
                   HHHHHHHH..HHHT-SEEEEEEHHHHC.TTHHHHHHHHHHHHHH-SSEEEEESSSSSHHH.HHHHHHCT-SEEEESHHHHH-THHHHHHHHHHCGGG CS
  His_biosynth  31 pvelakry..eeegadelhvvDldaak.egreanldlveeiaeevfipvqvGGGIrsled.veelleagadkviigtaavknpelikelaekfgsqk 123
                    + la++    e  ad+lhv  +d  +  + ++ l +v+ ++ ++++p+ v   I +  + +  + +aga++v    +a +np  + + +++ g+ k
    KIR61228.1  17 FARLAEEVraVEGAADWLHVDVMDNHFvPNLTIGLPVVQSLRAATELPFDVHLMITDPRRwAPGYADAGAHNVTFHAEACDNPVSLAKDLRAAGA-K 112
                   55666666323566788887777777644556667899999999999999999998887624568899999999999999999999888888888.8 PP

                   EEEEEE CS
  His_biosynth 124 ivvaiD 129
                     +aiD
    KIR61228.1 113 AGLAID 118
                   888888 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.6e-05
                   HH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHH CS
  His_biosynth  70 eevfipvqvGGGIrsledveelleagadkviigtaav 106
                    ++++ ++v+GGI     +e++  agad  + gta+ 
    KIR61228.1 168 GHLELRIEVDGGIAADT-IEQAAAAGADAFVAGTAVY 203
                   345699*******8766.****************975 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     5e-06     0.022     112     161 ..     156     205 ..     150     207 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5e-06
                 HHHHHHHHHHHHHSTTSEEEEESS--TTTHHHHHCTT-SEEEECHHCHTB CS
   QRPTase_C 112 eelkkaveelkeknkrvlievSGgvtlenveeyaksgvdvisvgalthsv 161
                 ++++ a   +++ + +++iev Gg+  +++e+ a  g d++  g++++++
  KIR61228.1 156 DKVRAARRHVDAGHLELRIEVDGGIAADTIEQAAAAGADAFVAGTAVYGA 205
                 5677777778888889*****************************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1818.44
//
Query:       KIR61229.1  [L=318]
Description: diguanylate cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-29  102.8   0.1    1.6e-29  102.3   0.1    1.2  1  Response_reg  Response regulator receiver domain
    2.3e-11   43.7   0.0      1e-10   41.6   0.0    2.0  1  GGDEF         Diguanylate cyclase, GGDEF domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.1   1.8e-33   1.6e-29       1     111 [.      11     122 ..      11     123 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 1.8e-33
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTES CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealkagad 95 
                   +l+vdDd ++++ ++  l+ +g+ ev  a dg+eale ++++++dl ++D++mp++dGlel++++r+++  + lpvi+lta++   d+v++l+agad
    KIR61229.1  11 ILVVDDDADIARFVEFNLRLHGF-EVIHAGDGQEALEVIERQRPDLAVVDLMMPRVDGLELTRRLRADPmtSALPVIMLTAKGMTVDKVHGLSAGAD 106
                   8**********************.9999*****************************************8888************************ PP

                   EEEESSG-HHHHHHHH CS
  Response_reg  96 dflsKpfdpeeLlkal 111
                   d+l+Kpfd +eL++++
    KIR61229.1 107 DYLVKPFDTAELVARV 122
                   *************987 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   1.1e-14     1e-10       6      89 ..     138     221 ..     135     306 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 1.1e-14
                 CCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-T....TSEEEEESSSEEEEEEE CS
       GGDEF   6 lTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrk....sdlvaRlggdeFaillp 89 
                 lTgLp  + +++e++ ++++    +  +av ++d+d+Fk++nd+yG   GDe+++++a+ L +++        +++ +ggd+F+i+  
  KIR61229.1 138 LTGLPGNSRIRREISDRVRS----GVDYAVGYVDIDRFKSVNDRYGFVRGDEFISALARSLHRAVVAiglpPAFLGHVGGDDFVIVCA 221
                 77777766666665555544....57799***********************************9998777899***********964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2392.60
//
Query:       KIR61230.1  [L=353]
Description: DeoR faimly transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-50  169.8   0.4    8.3e-50  169.4   0.4    1.2  1  RibD_C           RibD C-terminal domain
      3e-16   59.1   0.0    5.4e-16   58.3   0.0    1.3  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    5.7e-05   22.9   0.0    0.00012   21.9   0.0    1.5  1  MafB19-deam      MafB19-like deaminase


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.4   0.4   1.4e-53   8.3e-50       1     198 [.     150     342 ..     150     344 .. 0.94

  Alignments for each domain:
  == domain 1  score: 169.4 bits;  conditional E-value: 1.4e-53
                 -EEEEEEEEETTSBSSCTTSSGCTSS-HHHHHHHHHHHHTSSEEEEEHHHHHHHT--SS--SSCHSCHHHTT.G.SS-EEEEEETTS-S-TTSHHHHSS CS
      RibD_C   1 pyvilklavSlDGklaaaggeskwitgeearadvhelraeadailvGrgtvladnpsltvrwvkkreaeadaea.rqpvrvVvdstlrvpldakvltdd 98 
                 pyv++k+a++lDG++aaa+g+s wit+e+ar+dvh+lr  +da++ G+gtvlad+p+lt+r   +        a rqp+rvVvd+  r+p da+ ++d+
  KIR61230.1 150 PYVVWKYAATLDGRSAAADGTSMWITSEAARTDVHALRGTVDAVIAGVGTVLADDPRLTARNLRDG-----TLAiRQPLRVVVDTFGRTPADAR-VRDG 242
                 8***********************************************************998885.....3356*******************.6667 PP

                 .S-EEEEESSCSCHHHHHHCCE......SE-HHHHHHHHHHTT--EEEEEETHHHHHHHHHTTT-SEEEEEEESCE--TTSBCSSSSST-SS....EEE CS
      RibD_C  99 .aptlvatteeadkekveklkv......rvdlkelleeLkergirsllveGGatLagsllraglvDelrlyiaPkllGgagktlfdgegfka....lkl 186
                  a+t+vat +e          v      rvdl++ll+eL+ rg+r  l+eGG++Lag++l+aglvD+++ y+aPkllG+ g+t   + g+ +    + l
  KIR61230.1 243 aARTWVATAAE----------VgtgpdgRVDLPALLAELHHRGVRAALLEGGPKLAGAFLAAGLVDRVVAYVAPKLLGA-GPTALADAGVGTiadaIDL 330
                 7********95..........5558889***************************************************.********99999999999 PP

                 EEEEEEEETTEE CS
      RibD_C 187 klvksealgegv 198
                 + + ++++g+++
  KIR61230.1 331 EITDVTQVGPDL 342
                 999999999986 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0     9e-20   5.4e-16       6     100 ..       8     103 ..       5     104 .. 0.92

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 9e-20
                      HHHHHHHHHHHHHH..TTTSCSEEEEEEE.TTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHHTSSCETTEEEEEEE--BHH......HHHHHH CS
  dCMP_cyt_deam_1   6 kllelalkaakeaq..kcsnfkVGavivk.ngeiistgyngepaggsktiHAEvnAilkaaknggsklegatlyvtlePCsm......Cakaii 90 
                       +++ a+++a +    + +n+ VG+v+++ +ge++++g++  + gg+   HAE++A+++a+++     +g t +vtlePC +      C+ a+i
       KIR61230.1   8 DAMRRAIALAARGLgtTSPNPVVGCVLLDpDGEVVGEGFHAYA-GGP---HAEIVALAQAGRR----ARGGTAVVTLEPCDHtgrtgpCSHALI 93 
                      579999999999988899***********************95.777...**********976....567999********************* PP

                      HHT-SEEEEE CS
  dCMP_cyt_deam_1  91 qsgikkvvvg 100
                       +g+ +vv++
       KIR61230.1  94 AAGVARVVIA 103
                      ********96 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0     2e-08   0.00012      25     104 ..      30     107 ..       5     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2e-08
  MafB19-deam  25 igaviv.kdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCd......mCagaivqaglkklvygagnp 104
                  +g+v    d++v++ g          + HaEi al qA     + r+ + t +vtlepCd      +C  a++ ag+ ++v ++ +p
   KIR61230.1  30 VGCVLLdPDGEVVGEGFH----AYAGGPHAEIVALAQA-----GRRARGGTAVVTLEPCDhtgrtgPCSHALIAAGVARVVIAVPDP 107
                  666666556777777777....344688**********.....7778999*********85555557**************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2830.39
//
Query:       KIR61231.1  [L=225]
Description: riboflavin synthase subunit alpha [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.1e-51  170.0   0.0    3.5e-26   91.0   0.0    2.1  2  Lum_binding  Lumazine binding domain
  ------ inclusion threshold ------
      0.043   12.5   0.0       0.32    9.6   0.0    1.8  2  GBV-C_env    GB virus C genotype envelope


Domain annotation for each model (and alignments):
>> Lum_binding  Lumazine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.1   7.5e-26   6.7e-22       1      87 []       3      87 ..       3      87 .. 0.90
   2 !   91.0   0.0     4e-30   3.5e-26       1      87 []     100     184 ..     100     184 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 7.5e-26
                 -S--SEEEEEEEEE.E.CGCTTEETEESGGGGG..TTT-EEEETTEEEEEEEEEE.SSEEEEEEEHHHHHHSSGGG--TTSEEEEEEE CS
  Lum_binding  1 tGiVeevgtvesieke.ekledltielpelakylvekGdsiavnGvcLTVvteeveeeeftvdvipeTlerttlgelkvgdkVNlEra 87
                 tGiVee+g+v++  ++ ++++ + i+ p l +  +++GdsiavnGvcLTVv  +v+ + ft+dv+ eTl+r++lg+l++g  VNlEra
   KIR61231.1  3 TGIVEELGEVVRTAETgDDSALVAIRGP-LVTGDARHGDSIAVNGVCLTVV--DVDGDVFTADVMGETLRRSALGALRPGAPVNLERA 87
                 8************666456777777666.77777899*************9..9********************************96 PP

  == domain 2  score: 91.0 bits;  conditional E-value: 4e-30
                  -S--SEEEEEEEEE.ECGCTTEETEES.GGGGG..TTT-EEEETTEEEEEEEEEE.SSEEEEEEEHHHHHHSSGGG--TTSEEEEEEE CS
  Lum_binding   1 tGiVeevgtvesiekeekledltielp.elakylvekGdsiavnGvcLTVvteeveeeeftvdvipeTlerttlgelkvgdkVNlEra 87 
                  +G+V++vg v s +++ ++e+++++lp +l++y+vekG si+v+Gv+LTV+   v  ++f+v +ip+Tl+ ttlge +vgd VNlE++
   KIR61231.1 100 QGHVDGVGAVLSRQPAAQWETVRFRLPaALSRYVVEKG-SITVDGVSLTVA--GVGPDWFSVGLIPTTLKLTTLGERAVGDPVNLEVD 184
                  8************99999********************.***********9..89*******************************97 PP

>> GBV-C_env  GB virus C genotype envelope
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.022     2e+02     275     335 ..      25      83 ..      11      85 .. 0.75
   2 ?    9.6   0.0   3.6e-05      0.32     249     359 ..      89     204 ..      84     206 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.022
   GBV-C_env 275 vgerpkylgqhgvgtlrgavkklsvnytvidiggylhalkcPavefpegtlpklipgrPvn 335
                 v +r+++++ ++   +  ++ + +v +tv+d+ g +   ++       ++l+ l pg Pvn
  KIR61231.1  25 VAIRGPLVTGDAR--HGDSIAVNGVCLTVVDVDGDVFTADVMGETLRRSALGALRPGAPVN 83 
                 5667777654444..4445556778888888888888888888789999***********9 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 3.6e-05
   GBV-C_env 249 GvGtrlteeleavlvdggveskvttpv....gerpkylgqhgv.gtlrgavkklsvnytvidiggylhalkcPavefpegtlpklipgrPvnaClllgt 342
                  +G+rl  +l    vdg   +    p     ++r ++ +  +     +g++++ +v++tv+ +g  +  +   ++    +tl+++  g Pvn  + +  
  KIR61231.1  89 ALGSRLGGHLVQGHVDGVGAVLSRQPAaqweTVRFRLPAALSRyVVEKGSITVDGVSLTVAGVGPDWFSVGLIPTTLKLTTLGERAVGDPVNLEVDVLA 187
                 68999999999999987554444444311125566776655441445789999999**************9877799***************9999888 PP

   GBV-C_env 343 evseeltaagapGGaya 359
                 +  e l +  +pGG  +
  KIR61231.1 188 KYVERLLGDRLPGGSDQ 204
                 8888888888***9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1634.11
//
Query:       KIR61232.1  [L=233]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-52  176.7  13.6    4.7e-52  176.5  13.6    1.0  1  NMN_transporter  Nicotinamide mononucleotide transporter
  ------ inclusion threshold ------
       0.16   11.3   0.1       0.21   10.9   0.1    1.1  1  NMO              Nitronate monooxygenase


Domain annotation for each model (and alignments):
>> NMN_transporter  Nicotinamide mononucleotide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.5  13.6   5.2e-56   4.7e-52       2     176 .]      22     212 ..      21     212 .. 0.96

  Alignments for each domain:
  == domain 1  score: 176.5 bits;  conditional E-value: 5.2e-56
  NMN_transporter   2 lleligallgllsvllaarrniwnwpvgiisvllyivvffqa........glygdallqlfyivmsiyGwirWsknkkk.......av..rklt 78 
                      + e++g+ +gl+s+ll+ rr +w+wpvg+++++l+++vf++          lyg+a++q+f++++s+yGw+rW++n+++       av  r++t
       KIR61232.1  22 VREIVGNAFGLVSALLGLRRLVWAWPVGMVGNALLLTVFLGGafatpqahDLYGQAGRQVFFFAVSVYGWWRWTRNRRAgsggddaAVapRWAT 115
                      679************************************9998999999999***********************999999998754889**** PP

  NMN_transporter  79 kkewlilllvivlgtallgfllkaltdaalpvlDafttvlsivaqllmarryvenWllWivvdvvsvvlyllkglyvtailyvvylvlavygll 172
                      ++e+l lll++++gta+++ +l+al ++  p+ Da++ ++s++a++ mar++ve+Wl+Wi+vd+v+v+l+l  g+y++a++y+vy +l+v+g++
       KIR61232.1 116 RRERLGLLLAAAAGTAAAYPVLAAL-GSWGPLPDAWILTGSLLATYGMARGWVEFWLVWIAVDAVGVPLLLRGGFYPSAAMYLVYGALCVWGFV 208
                      ************************6.8888999************************************************************* PP

  NMN_transporter 173 eWrk 176
                      +W++
       KIR61232.1 209 SWWR 212
                      **96 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   2.4e-05      0.21     130     205 ..     115     192 ..     106     205 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.4e-05
         NMO 130 arlkeagvvliptissvkearkvearG.....aDalivqGpeaGGhqGtpevgdkglfaLvpqvldavdiPviAaGGiidr 205
                  r++++g++l   ++++ +  +++a+G     +Da i++G+      G ++ g   +f Lv  ++dav +P++  GG+   
  KIR61232.1 115 TRRERLGLLLAAAAGTAAAYPVLAALGswgplPDAWILTGSLLAT-YG-MARG-WVEFWLVWIAVDAVGVPLLLRGGFYPS 192
                 678899999999999999999999999999**********97643.33.3333.5589*******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1588.30
//
Query:       KIR61233.1  [L=421]
Description: 3,4-dihydroxy-2-butanone 4-phosphate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-88  292.9   0.1    1.2e-87  292.4   0.1    1.2  1  DHBP_synthase    3,4-dihydroxy-2-butanone 4-phosphate synthas
    6.7e-71  237.2   0.0    1.3e-70  236.3   0.0    1.4  1  GTP_cyclohydro2  GTP cyclohydrolase II


Domain annotation for each model (and alignments):
>> DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.4   0.1   1.4e-91   1.2e-87       1     192 []       8     199 ..       8     199 .. 0.99

  Alignments for each domain:
  == domain 1  score: 292.4 bits;  conditional E-value: 1.4e-91
                    HHHHHHHHTT--EEEESSTTTT-BEEEEEEGGG--HHHHHHHHHHB-S--EEEEEHHHHHHTT--BSSSS-SSTT---BB--EEESST-SSS-SHH CS
  DHBP_synthase   1 eeaiealkaGkfvivvDdedrenegdLiiaAekvtpekvafmirhasGlicvalteeradeLeLplmveenedkhktaftvsvdaaegttTGIsaa 96 
                    e+a+++++aG++v+vvDd+drenegdLi+aAe +tpe vafm+r++sG++cv+lte+++d+L+Lp+m+++n+d+++ta+tv+vda+eg+ TGIsaa
     KIR61233.1   8 EQAVADIAAGRPVVVVDDADRENEGDLIFAAELATPELVAFMVRYTSGYVCVPLTEDECDRLDLPPMHHTNQDRRGTAYTVTVDAREGVDTGISAA 103
                    689********************************************************************************************* PP

                    HHHHHHHHHH-TT--GGGEEEEEEEEEEEE-TTGGGTS-SHHHHHHHHHHHTTS-SBEEEEEBB-TTSCB-BHHHHHHHHHHHT-EEEEHHHHHHH CS
  DHBP_synthase  97 DRalTirkladpkakpedfrrPGhvfplrareggvleRrghTEaavdLarlaglkpaavicellnddgtmarrdeleefakkhglkiitiedliey 192
                    DRa+Tir la+++++p+d+ rPGhv+plrar ggvl+R ghTEaavdL+rlagl+pa+v+cel+nddgtm+r+++le+f+++hgl+++ti+dli+y
     KIR61233.1 104 DRAHTIRLLAAASTDPTDLARPGHVVPLRARAGGVLRRPGHTEAAVDLTRLAGLRPAGVLCELVNDDGTMMRLPDLEKFCAEHGLTLVTIADLITY 199
                    **********************************************************************************************98 PP

>> GTP_cyclohydro2  GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.3   0.0   1.4e-74   1.3e-70       2     161 ..     209     373 ..     208     375 .. 0.98

  Alignments for each domain:
  == domain 1  score: 236.3 bits;  conditional E-value: 1.4e-74
                      XEEEEEEEETTEEEEEEEE--.....EEEEEE-.........EEEEEE--HHHHHS-B--TTTTTHHHHHHHHHHHH-.EEEEEE-.-TTTTTH CS
  GTP_cyclohydro2   2 rvaeaklptrfgefrliayedkvdgkehlalvkgdi....pvlvRvHsecltgDvlgslrcdcgeqldealeliaeegrGvlvylr.qegrgig 90 
                      +va a++pt +g f++ +y+ ++d +eh+alv+gd+    +vlvRvHsecltgD++gslrcdcg+ql++al+++a+egrGv++y+r +egrgig
       KIR61233.1 209 QVAAARMPTPHGVFTAFGYRAEHDPAEHVALVMGDLgdgqDVLVRVHSECLTGDTFGSLRCDCGPQLQAALARVAAEGRGVVLYVRgHEGRGIG 302
                      55689*********************************************************************99****************** PP

                      HHHHHHHHHHHHCT--HHHHHHHHT--S-----HHHHHHHHHTT--EEEEE-S-HHHHHHHCTT....SEE CS
  GTP_cyclohydro2  91 llnklkayalqdeglDTveanlalglpadardygiaaqILkdlgvkkirLlTnnpekveaLegfgievver 161
                      ll+kl+ay+lqd g DTv+anl+lglpadardyg++aqIL+dlgv+++rLlTnnp+k ++Leg+g++v+ r
       KIR61233.1 303 LLHKLRAYQLQDLGRDTVDANLDLGLPADARDYGTGAQILHDLGVRSMRLLTNNPAKRAGLEGYGLTVTGR 373
                      ********************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3024.17
//
Query:       KIR61234.1  [L=166]
Description: 6,7-dimethyl-8-ribityllumazine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-43  148.4   3.9    1.3e-43  148.2   3.9    1.0  1  DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase


Domain annotation for each model (and alignments):
>> DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.2   3.9   7.2e-48   1.3e-43       2     137 ..      17     148 ..      16     152 .. 0.95

  Alignments for each domain:
  == domain 1  score: 148.2 bits;  conditional E-value: 7.2e-48
                    EEEEEEEESTTHHHHHHHHHHHHHHHHHCTTSSCCEEEEEESSCCCHHHHHHHHCTSTT-.SEEEEEEEEE--SSCHHHHHHHHHHHHHHHHHHHC CS
  DMRL_synthase   2 lriaiVvarfneeitdkllegaldelkeagvaeenidvvtVPGafElplaakklaesskyldavialGvvirGetphfeyvaeavskglmrvsldt 97 
                    + +++V+ar++ e+td++l++a+++++++g+   + +v++V+G++Elp++a+ +a++   +d+v+alGvv+rG+t hf+yv+++v++gl+rv+ld+
     KIR61234.1  17 MTVGVVAARWHGELTDHMLDRAVAAAQACGA---RAVVARVAGSVELPVVAQAMARR---FDVVVALGVVVRGATAHFDYVCKSVTEGLTRVALDE 106
                    789***************************5...79********************4...7*********************************** PP

                    TS-EEEEEEEESSHHCCHHCCTSTC..CCHHHHHHHHHHHHH CS
  DMRL_synthase  98 gvPvifgvltvdteeqaleraggka..gnkGeeaaeaalema 137
                    g+Pv+ gvltvdt+eqa++rag  +  ++kG++a  aal+ a
     KIR61234.1 107 GKPVAHGVLTVDTIEQARDRAGLPGsaEDKGWSATVAALDAA 148
                    **********************55556***********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1317.42
//
Query:       KIR61235.1  [L=247]
Description: peptide ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-33  115.1   0.0    4.2e-33  114.8   0.0    1.1  1  ABC_tran     ABC transporter
    1.5e-11   44.7   0.0    0.00012   22.1   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    5.2e-07   29.3   0.0    0.00051   19.6   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
    0.00012   21.7   0.0    0.00024   20.8   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
    0.00017   21.9   0.1     0.0013   19.0   0.1    2.1  1  AAA_22       AAA domain
     0.0012   19.3   0.9     0.0028   18.1   0.9    1.8  1  AAA_16       AAA ATPase domain
     0.0038   17.0   0.1      0.072   12.8   0.0    2.1  2  AAA_30       AAA domain
     0.0074   16.5   0.1      0.081   13.2   0.1    2.3  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
     0.0076   16.2   0.0      0.015   15.2   0.0    1.4  1  RsgA_GTPase  RsgA GTPase
     0.0087   16.2   0.0      0.017   15.3   0.0    1.5  1  AAA_33       AAA domain
  ------ inclusion threshold ------
      0.015   14.5   0.0       0.31   10.2   0.0    2.0  2  NB-ARC       NB-ARC domain
      0.015   15.8   0.0       0.02   15.4   0.0    1.2  1  AAA_23       AAA domain
      0.018   14.6   0.9       0.18   11.4   0.0    2.5  2  AAA_25       AAA domain
      0.022   14.7   0.0      0.056   13.4   0.0    1.7  1  NACHT        NACHT domain
      0.032   13.9   0.0      0.046   13.4   0.0    1.3  1  AAA_24       AAA domain
      0.055   13.5   0.1        5.4    7.0   0.1    2.4  2  AAA_5        AAA domain (dynein-related subfamily)
      0.077   13.2   0.3        0.3   11.3   0.0    2.1  3  AAA_28       AAA domain
       0.13   12.0   0.0       0.14   11.9   0.0    1.1  1  AAA_15       AAA ATPase domain
       0.15   12.1   0.0        1.1    9.3   0.0    2.0  2  AAA_14       AAA domain
       0.15   11.9   0.1       0.25   11.2   0.1    1.5  1  APS_kinase   Adenylylsulphate kinase
       0.16   10.7   0.0        8.1    5.1   0.0    2.2  2  ABC_ATPase   Predicted ATPase of the ABC class
        0.3   10.2   0.0       0.49    9.5   0.0    1.2  1  G-alpha      G-protein alpha subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   0.0   5.2e-36   4.2e-33       1     137 []      19     167 ..      19     167 .. 0.96

  Alignments for each domain:
  == domain 1  score: 114.8 bits;  conditional E-value: 5.2e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren..............esde 83 
                 l+ ++l + e ++va++G +G+GKStLl+++  l++ + G+i+ldg+d+++   +  ++r++ig+++q  +lfp+l+v +n              e+++
  KIR61235.1  19 LDGLDLAIDEHRVVALIGASGSGKSTLLRCVNLLEELDDGTIELDGQDISDprVDPDRVRRRIGMVFQAYNLFPHLSVLDNvtlapvrvhrrpraEAEA 117
                 68899**********************************************9888999************************************9999* PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++ ++l+++gl  +++         LSgGq+qrva++ral++ p+l+llDE t+
  KIR61235.1 118 QARELLDRVGLGAKANAYP----DRLSGGQQQRVAIVRALANSPRLMLLDEVTS 167
                 ***********99655555....****************************985 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.4e-07   0.00012       2      61 ..      32      86 ..      31      95 .. 0.71
   2 !   20.8   0.0   3.4e-07   0.00027     228     297 ..     130     196 ..      92     200 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.4e-07
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefe 61
                 +liG+ gsGKS+LL++  ll        ++++++ +g++i++ +  +d+   +i ++f+
  KIR61235.1 32 VALIGASGSGKSTLLRCVNLLE-----ELDDGTIELDGQDISDPRVDPDRVRRRIGMVFQ 86
                68******************95.....456666666666666666666655555555555 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 3.4e-07
      AAA_21 228 dgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                    +  ++ lS G+++  a++ al+  +   +l l+DE+ + L+P+l+ ++l l++el++ g   +l+TH
  KIR61235.1 130 AKANAYPDRLSGGQQQRVAIVRALANSP---RLMLLDEVTSALDPELVGEVLALVRELKADGMTMVLATH 196
                 4555667778999999989998998877...****************************999999***** PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0023       1.8      24      44 ..      29      49 ..      19      57 .. 0.86
   2 !   19.6   0.0   6.2e-07   0.00051     130     201 ..     132     200 ..      87     211 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0023
                SSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldAi 44
                +++ a++G+ GSGKs ll  +
  KIR61235.1 29 HRVVALIGASGSGKSTLLRCV 49
                56899**********998765 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 6.2e-07
                 TT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
       SMC_N 130 agiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreem 201
                 a+ +++ LSgG+++ va+  + A+ +     l+llDe+ +aLD + v +v  l++e + + + ++  +++ ++
  KIR61235.1 132 ANAYPDRLSGGQQQRVAI--VRALANS--PRLMLLDEVTSALDPELVGEVLALVRELKADgMTMVLATHEMGF 200
                 4445669******97665..5555433..3499**********************999883444444555444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.9e-07   0.00024      13      39 ..      20      46 ..      16      52 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.9e-07
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                dg ++ id++ ++ l+G+sGsGKSTll
  KIR61235.1 20 DGLDLAIDEHRVVALIGASGSGKSTLL 46
                566788998889**************8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   1.6e-06    0.0013       4     127 ..      28     193 ..      25     202 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.6e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee....................................erpevvfvtlpsst..sskdllrellral 64 
                 ++++++++G sG+GK+tllr +    + +    e                                     +++++ v +      + +  +rell  +
  KIR61235.1  28 EHRVVALIGASGSGKSTLLRCVNLLEELDDGTIEldgqdisdprvdpdrvrrrigmvfqaynlfphlsvlDNVTLAPVRVHRRPraEAEAQARELLDRV 126
                 578899**************9888775544444477888888888888888888888888888866666655555544444444546666677888887 PP

      AAA_22  65 glelka..erlsseellealeqalrarav.ielliiDEaqh.lrseealeeLrsllnl.srkgvqliL 127
                 gl++ka  ++++++   ++    +ra a  ++l+++DE+   l  +e++ e+  l+   + +g++++L
  KIR61235.1 127 GLGAKAnaYPDRLSGGQQQRVAIVRALANsPRLMLLDEVTSaL-DPELVGEVLALVRElKADGMTMVL 193
                 7777776644444444444444444444466788888888877.544444444444433445555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.9   3.5e-06    0.0028      23      50 ..      28      54 ..      18     193 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.5e-06
      AAA_16 23 rpelvllsGesGvGKsslvrellralek 50
                + ++v l+G+sG+GKs+l+r++   le+
  KIR61235.1 28 EHRVVALIGASGSGKSTLLRCVN-LLEE 54
                4589****************997.3333 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   8.8e-05     0.072      14      40 ..      25      51 ..      22      63 .. 0.82
   2 ?    1.9   0.1      0.19   1.6e+02      53     120 ..     113     192 ..     103     197 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.8e-05
      AAA_30 14 ltsgdrvavltGpAGtGKttalkalre 40
                + +++rv++l G+ G+GK+t+l+ ++ 
  KIR61235.1 25 AIDEHRVVALIGASGSGKSTLLRCVNL 51
                567889****************98765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.19
      AAA_30  53 AptgkaAkvLaeelgi..eastiakllkrlk.........grarlepgtllivDEagmv.dtkqlaallkaaek...agakvi 120
                 A  +++A++L + +g+  +a+     l              ra  ++ +l++ DE+  + d + + ++l+ +++   +g++++
  KIR61235.1 113 AEAEAQARELLDRVGLgaKANAYPDRL---SggqqqrvaiVRALANSPRLMLLDEVTSAlDPELVGEVLALVRElkaDGMTMV 192
                 556667777777666522333333333...12346778764444455599999998666566555555555444110555555 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   9.9e-05     0.081      61      89 ..     154     182 ..     116     183 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.9e-05
     SbcCD_C  61 epalrlvfLDEAFsklDeesiatllelle 89 
                  +++rl++LDE  s lD+e + ++l+l++
  KIR61235.1 154 ANSPRLMLLDEVTSALDPELVGEVLALVR 182
                 4579********************99987 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.8e-05     0.015      97     120 ..      26      50 ..      16      66 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.8e-05
                  CTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  97 lkd.ktsvlvGqSGvGKStLinall 120
                  +++ ++++l+G SG GKStL+  ++
   KIR61235.1  26 IDEhRVVALIGASGSGKSTLLRCVN 50 
                  5555999*************98655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.1e-05     0.017       1      25 [.      31      59 ..      31     119 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.1e-05
      AAA_33  1 lvllvGlpGsGKstlae..rllkklg..a 25
                +v l+G++GsGKstl++  +ll++l+  +
  KIR61235.1 31 VVALIGASGSGKSTLLRcvNLLEELDdgT 59
                799************99334577777542 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00038      0.31      17      41 ..      28      50 ..      18      58 .. 0.82
   2 ?    2.2   0.0       0.1        84      92     149 ..     145     206 ..     120     212 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00038
                TSCSEEEEEEESTTSSHHHHHHHHC CS
      NB-ARC 17 elqslvvalvGmgGvGKttlakqil 41
                e    vval G  G+GK+tl++ ++
  KIR61235.1 28 EHR--VVALIGASGSGKSTLLRCVN 50
                444..9**************98765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.1
                 HHHHHHHHCCCTTEEEEEEEE-SHHH....H.....HHHHCHTTSEEEEEESBCCCCCCS-S CS
      NB-ARC  92 lkrklvrlLltkrfllvlDDVweeed....wdkigvvlparenrlrvllTTRdeevanavsa 149
                     +vr+L +   l++lD V    d     + + +v+  +  ++ ++l T ++  a +v++
  KIR61235.1 145 QRVAIVRALANSPRLMLLDEVTSALDpelvGEVLALVRELKADGMTMVLATHEMGFAREVAD 206
                 56789*******99*******98877443223334455566677888888888877777766 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   2.5e-05      0.02      16      41 ..      23      51 ..       4      52 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.5e-05
      AAA_23 16 dF...skgltlItGpNGaGKTTildAikl 41
                d+   ++ +++++G  G+GK+T+l+++ l
  KIR61235.1 23 DLaidEHRVVALIGASGSGKSTLLRCVNL 51
                4455678999***************9875 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00022      0.18      30      50 ..      26      46 ..      15      51 .. 0.90
   2 ?    1.2   0.4      0.28   2.3e+02      84     111 ..      75     102 ..      72     197 .. 0.48

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00022
      AAA_25 30 lpagelallaGapgtGKttla 50
                + ++ +++l+Ga+g+GK+tl+
  KIR61235.1 26 IDEHRVVALIGASGSGKSTLL 46
                68999**************97 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.28
      AAA_25  84 delrrRlravgealrddarllvldlagv 111
                 d++rrR+  v++a+++  +l vld ++ 
  KIR61235.1  75 DRVRRRIGMVFQAYNLFPHLSVLDNVTL 102
                 5667777777777733333333331111 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.9e-05     0.056       1      19 [.      30      48 ..      30      63 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.9e-05
                SCEEEEC-TTTCHHHHHHH CS
       NACHT  1 rlvilqGeaGsGKTtLlqk 19
                r+v+l G++GsGK+tLl+ 
  KIR61235.1 30 RVVALIGASGSGKSTLLRC 48
                799**************85 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.7e-05     0.046       4      48 ..      31      80 ..      28     123 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.7e-05
      AAA_24  4 kiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie........s 48
                 ++++G sg+GK+tl++      l+  +++G+ +ld+ ++ d++         
  KIR61235.1 31 VVALIGASGSGKSTLLRCV---NLLEELDDGTIELDGQDISDPRvdpdrvrrR 80
                789***************9...7888999999999999988877555555443 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0066       5.4       2      17 ..      32      47 ..      31      53 .. 0.88
   2 ?    4.2   0.0      0.05        41      59      90 ..     149     182 ..     129     219 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0066
                EEEE--SSSSHHHHHH CS
       AAA_5  2 vlLvGppGtgKselae 17
                v L+G++G+gKs+l +
  KIR61235.1 32 VALIGASGSGKSTLLR 47
                579**********987 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.05
                 ------.G-SEEEEESGGG--.HHHHHHHHHHHH CS
       AAA_5  59 lvraar.egeilvlDEverae.sevlnsLlslle 90 
                 +vra   ++++++lDEv+ a  +e ++++l l  
  KIR61235.1 149 IVRALAnSPRLMLLDEVTSALdPELVGEVLALVR 182
                 555555599*********9998999999888765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00037       0.3       2      17 ..      32      47 ..      31      60 .. 0.87
   2 ?   -2.0   0.0       4.4   3.6e+03     142     142 ..     120     120 ..      85     164 .. 0.61
   3 ?   -2.3   0.0       5.7   4.6e+03      17      30 ..     182     198 ..     179     218 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00037
      AAA_28  2 ivitGgestGKTtlle 17
                ++++G++++GK+tll+
  KIR61235.1 32 VALIGASGSGKSTLLR 47
                89************96 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.4
      AAA_28 142 r 142
                 r
  KIR61235.1 120 R 120
                 2 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 5.7
      AAA_28  17 eaLaargypvv...pEa 30 
                 ++L+a+g+++v   +E+
  KIR61235.1 182 RELKADGMTMVlatHEM 198
                 55555544433233332 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00017      0.14      20      69 ..      25      71 ..      19     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
      AAA_15 20 dlsee.ltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleife 69
                 ++e  +  liG+ +sGKS++l+  +l+ + +    + +i ++ +d+++ +
  KIR61235.1 25 AIDEHrVVALIGASGSGKSTLLRCVNLLEELD----DGTIELDGQDISDPR 71
                45555699****************99998877....788888888887765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0014       1.1       2      43 ..      29      69 ..      28     125 .. 0.71
   2 ?    0.8   0.0      0.57   4.6e+02      61      77 ..     154     171 ..     132     208 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0014
      AAA_14  2 rkilvitGaRrvGKTtllkql..ikellvkkesilyinldderd 43
                ++++++ Ga  +GK+tll+ +  ++el   ++ +++++ +d +d
  KIR61235.1 29 HRVVALIGASGSGKSTLLRCVnlLEEL---DDGTIELDGQDISD 69
                6899*************9644114333...47777777777666 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.57
      AAA_14  61 keekktylflDEiqev..p 77 
                  +   ++++lDE+  +  p
  KIR61235.1 154 AN-SPRLMLLDEVTSAldP 171
                 33.67899****9987442 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00031      0.25       4      41 ..      31      67 ..      28     120 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00031
                EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH CS
  APS_kinase  4 vvwltGlsgsGKstianalekkLvekgisvylLdGdnv 41
                vv l G sgsGKst+ + ++  L+e    ++ LdG+ +
  KIR61235.1 31 VVALIGASGSGKSTLLRCVN-LLEELDDGTIELDGQDI 67
                78899**********99987.899999999*****987 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.038        31     245     264 ..      30      49 ..      20      53 .. 0.83
   2 ?    5.1   0.0    0.0099       8.1     324     352 ..     140     168 ..     130     171 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.038
                 SEEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 245 GvtlIvGggfhGKsTLLeAl 264
                  v++++G    GKsTLL+ +
  KIR61235.1  30 RVVALIGASGSGKSTLLRCV 49 
                 488999***********976 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0099
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsA 352
                 SG   q ++i++al +  +l+L+DE tsA
  KIR61235.1 140 SGGQQQRVAIVRALANSPRLMLLDEVTSA 168
                 99999***********************9 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0006      0.49      26      47 ..      32      53 ..      24      62 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0006
                EEEEESTTSSHHHHHHHHHHHC CS
     G-alpha 26 llllGqseSGKsTilkqlklly 47
                + l+G+s+SGKsT+l+ + ll+
  KIR61235.1 32 VALIGASGSGKSTLLRCVNLLE 53
                689************9888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1815.51
//
Query:       KIR61236.1  [L=280]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-16   59.4  11.6    3.7e-16   59.4  11.6    1.9  2  BPD_transp_1    Binding-protein-dependent transport system in
  ------ inclusion threshold ------
      0.084   12.9   0.2       0.26   11.4   0.2    1.9  1  Tom5            Mitochondrial import receptor subunit or tran
       0.29   10.7   0.1       0.44   10.1   0.1    1.2  1  Y_phosphatase2  Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.6      0.11   6.6e+02     115     136 ..      30      50 ..      14     105 .. 0.46
   2 !   59.4  11.6   6.2e-20   3.7e-16       3     182 ..      91     277 ..      89     280 .] 0.85

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.11
  BPD_transp_1 115 ilafggllggavlleflgswpG 136
                   + a++++lg  +++  +g  pG
    KIR61236.1  30 AAASTAALGTLLVVAVTG-APG 50 
                   333334444444444444.333 PP

  == domain 2  score: 59.4 bits;  conditional E-value: 6.2e-20
  BPD_transp_1   3 llGilaa......lnrnkkldkllrpliivllslPsfvlaillvlvf..vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralG 91 
                   llG+l+a          ++++ l  ++++++++lP ++++ +l+l +    l++       + ++l+l++++y   ++ra+++s+  ++  aar lG
    KIR61236.1  91 LLGLLVAilrtlrGPVFFPVRALAAGYTYTFRGLPLIIVLYVLTLGVpgLRLQGMPPVLVLGGLALVLTYGGYLAEVFRAGIESVHPSQLAAARSLG 187
                   566666666533222245789999******************9987776444444444444667788999*************************** PP

  BPD_transp_1  92 asrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldpr 182
                   ++++q++r+vvlP+a++ +++ l++ +++l ++  l+++ g   ++    + + + ++y+  + ++ + +v++ ++l++v+d+++   ++r
    KIR61236.1 188 LTYRQTMRHVVLPQAVRRVAPPLLNDVVALQKDVGLVSLAGPIDAVRAAQIATAETFNYTPYI-VAGALFVLLAIPLIAVTDWVTLRAARR 277
                   *****************************************9999999999999999999888.999999999999999999988766665 PP

>> Tom5  Mitochondrial import receptor subunit or translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   4.3e-05      0.26       5      33 ..       4      32 ..       1      33 [. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.3e-05
        Tom5  5 gPpqpSeeEikaaeaeArqtvknfaaaaa 33
                +P +pS+++++++  + rqtv+ +++aaa
  KIR61236.1  4 APHEPSAAQRRRQAYRRRQTVTSVLVAAA 32
                6889**********************998 PP

>> Y_phosphatase2  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   7.3e-05      0.44      92     116 ..      79     103 ..      64     105 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.3e-05
                     -SEEEE-SSSSSHHHHHHHHHHHHT CS
  Y_phosphatase2  92 ypvllhckrGkhrtglvigclRklq 116
                       +l++c  G +  gl++++lR l 
      KIR61236.1  79 VRLLVCCAAGALLLGLLVAILRTLR 103
                     568*******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2161.97
//
Query:       KIR61237.1  [L=291]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-39  135.6   0.4      2e-39  135.4   0.4    1.1  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    0.00028   21.1   0.0     0.0019   18.4   0.0    2.1  2  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.4   0.4   2.2e-43     2e-39       1     224 [.      57     282 ..      57     283 .. 0.91

  Alignments for each domain:
  == domain 1  score: 135.4 bits;  conditional E-value: 2.2e-43
                 EEEEE-S.-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-...EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETT CS
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvda.dypPfsykdengeltGfdvdlakaiakrlgv...kvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkd 95 
                 l++++d+ +y+P+   ++  + +Gf+  +a a+a++lg+   +v++++v++d +++    +++D+ i++++it+eR++ vdF+ py+   q++++rk+ 
  KIR61237.1  57 LTIATDEpAYAPWFVGNKPETGEGFEAAVAYAVAEKLGYaraDVTWTRVKFDVAVA-PGPKEFDFDINQFSITEERKKAVDFTGPYYLVRQAVIARKS- 153
                 688998879******************************66556666678887774.4456799999*****************************65. PP

                 SHGTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE.ECGGCECEEEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
   SBP_bac_3  96 askissiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv.eeplsseeyaiavrk 193
                   ki + +sladL + k+g+q g+t+ ++++   k + + ++++++++a +aL+ng++d +v+d p++ y++  +  +  v+   +++ ++e+ + +  
  KIR61237.1 154 -AKIAGKTSLADLRDAKLGAQVGTTSYQAITDVIKPKTKPQVYNSNDDAKKALQNGQIDGLVVDLPTAFYITGAEITDATVVGqLPQVGTPEVFGLLLD 251
                 .4799999*********************9998877999999**************************999988877777776799************* PP

                 TTHHHHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 194 gdseLrkainkalaelkadgtlakisekWfg 224
                  +s+L   +  a+ +l+adgtl+k+++kW++
  KIR61237.1 252 HNSPLTPCLSGAVGQLTADGTLKKLEQKWLT 282
                 *****************************96 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.1e-07    0.0019      77     113 ..     116     152 ..     109     154 .. 0.88
   2 ?   -0.2   0.0      0.12   1.1e+03       5      35 ..     185     217 ..     182     224 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.1e-07
                      TS-SEE-SS-B--HHHHTTSEEESESEEE-EEEEEES CS
  Lig_chan-Glu_bd  77 kkadlavapltitaeReevvdFtkpfmelgisilikk 113
                      k+ d+ + +++it+eR+++vdFt p++    +++ +k
       KIR61237.1 116 KEFDFDINQFSITEERKKAVDFTGPYYLVRQAVIARK 152
                      578999********************98877777766 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.12
                      EE--.BTTTBEE..S..S---GGGGEESHHHHH CS
  Lig_chan-Glu_bd   5 vttileePyvml..kkeeelegneryeGfcidL 35 
                      v++ +++P v++  ++ ++  +n +++G ++dL
       KIR61237.1 185 VIKPKTKPQVYNsnDDAKKALQNGQIDGLVVDL 217
                      556667787776544455556667899999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1870.57
//
Query:       KIR61238.1  [L=87]
Description: phosphoribosyl-ATP pyrophosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-06   28.5   0.9    2.3e-06   28.0   0.9    1.4  1  PRA-PH    Phosphoribosyl-ATP pyrophosphohydrolase
  ------ inclusion threshold ------
      0.033   13.8   0.0      0.036   13.7   0.0    1.0  1  LPD34     Large polyvalent protein associated domain 34


Domain annotation for each model (and alignments):
>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.9   2.5e-10   2.3e-06      26      78 ..      28      86 ..       1      87 [] 0.77

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.5e-10
                H......HHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHCT--CHHHHHH CS
      PRA-PH 26 l......raaligEEavElleaasegdlaeladelaDllYvtygllvllGidldavfee 78
                l      + ++++EEa+E   aa+ +  +  a+e+  llY++ +l+ + G++l++v+++
  KIR61238.1 28 LekgvhfIGKKVVEEAAESWMAAEHEGPERAAEEISQLLYQAQVLMLATGLELKDVYRH 86
                134566699***********************************************986 PP

>> LPD34  Large polyvalent protein associated domain 34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     4e-06     0.036      55     117 ..       5      72 ..       1      81 [. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4e-06
       LPD34  55 kkifeklkeaakeWekqaaeTllldkaleYlrtpevkHtsNeWkkkkd.....daeeiSNrVYkmtys 117
                 ++ f +l+++a++    +++ ++l+k ++++    v+ ++  W + ++      aeeiS + Y+ ++ 
  KIR61238.1   5 EELFAELQAKAAAGTPGSGTVAALEKGVHFIGKKVVEEAAESWMAAEHegperAAEEISQLLYQAQVL 72 
                 5789***************************************87776566667899******98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 611.80
//
Query:       KIR61239.1  [L=281]
Description: ATP phosphoribosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-42  144.1   0.0    4.8e-42  143.6   0.0    1.2  1  HisG      ATP phosphoribosyltransferase
      1e-26   92.9   0.0    1.7e-26   92.1   0.0    1.4  1  HisG_C    HisG, C-terminal domain
  ------ inclusion threshold ------
       0.09   12.7   0.0       0.14   12.1   0.0    1.2  1  NMT1      NMT1/THI5 like


Domain annotation for each model (and alignments):
>> HisG  ATP phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.6   0.0     8e-46   4.8e-42       1     159 [.      49     201 ..      49     202 .. 0.92

  Alignments for each domain:
  == domain 1  score: 143.6 bits;  conditional E-value: 8e-46
                 -GGGHHHHHHTTSSSEEEEEHHHHHHCT...TEEEEEEESESEEEEEEEEETTSS--SGCGG.TT-.EEEEES-HHHHHHHHHHTT-EEEEEE-SS-CT CS
        HisG   1 raadiptyVeegavdlGitGkDvveEskeeeeveelldLgfgkcklvvavpeesevkslkdlvedkgkriaTsypnlakkyfeekglkveiiklsGsvE 99 
                 r++di+tyV++g +d+GitG+D++ +s++   +ee++dL fg++++ +a++  ++v  +++l    g+riaT yp l+++y++e+g+k+e+i+l+G+vE
  KIR61239.1  49 RPKDIATYVGSGDLDVGITGRDLLIDSGA--PAEEVVDLAFGRATFRFAARP-QDVAGVQEL---GGHRIATAYPGLVERYLAELGIKAEVIRLDGAVE 141
                 89************************865..5******************99.566666655...678******************************* PP

                 HHHHTTS-SEEEEEESSSHHHHHTTEEEE.EEEEEEEEEEEEEHHHHHSHHHHHHHHHHHH CS
        HisG 100 aapalglaDaIvDlvetGeTLrangLkai.etilessavLiankkslkkkekieellerlr 159
                  a++lg+aD+++D+vetG+TLr++gL ++ + +l+ssavL+ + ++ + + ++ +ll+rl+
  KIR61239.1 142 NAIRLGVADVVADVVETGATLRQAGLVVFgDPLLRSSAVLVRRVDAPE-HPQAAQLLRRLH 201
                 *****************************88**********7777776.668888999886 PP

>> HisG_C  HisG, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0   2.9e-30   1.7e-26       1      72 [.     206     277 ..     206     278 .. 0.99

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 2.9e-30
                 TTTEEEEEEEEEGGGHHHHHHH---SSS-EEEE-.SS-EEEEEEEEECCCHHHHHHHHHCTT-EEEEEEE-S CS
      HisG_C   1 ArkyvllmynvpkesleevlkilPGlrsPTvspladegwvaVsavveekevaevideLkaaGAsdIlvlpie 72 
                 Ar+yv+l y+vp   l+++ +++PG++sPTvspl++egwvaV+a+v++++v +++deL ++GA++Ilv++i+
  KIR61239.1 206 ARRYVMLAYDVPAGLLDRASSLTPGIESPTVSPLHREGWVAVQAMVQRDDVHRIMDELYELGARAILVTNIH 277
                 99********************************************************************97 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.3e-05      0.14      31     149 ..      50     157 ..      41     170 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.3e-05
                 TTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEE.E-S--EEEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-. CS
        NMT1  31 psdatelvasgkadfgvsyqesllaarakglpvvsvaal.lqeplsglivlkdsgikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvg 128
                 p+d  ++v+sg+ d+g++  + l+   ++g+p   v  l + + ++ ++++ + ++  +++L G+ri++ +      l+++ la+ g+   + ++++ +
  KIR61239.1  50 PKDIATYVGSGDLDVGITGRDLLI---DSGAPAEEVVDLaFGRATFRFAARPQ-DVAGVQELGGHRIATAY----PGLVERYLAELGI---KAEVIRLD 137
                 68899*******************...66666666666514566677766665.9*************999....6789999999999...44555555 PP

                 TT-HHHHHHCTSSSEEECEET CS
        NMT1 129 gtslakalltgkvDaaiggye 149
                 g    +a+  g +D++  ++e
  KIR61239.1 138 GAVE-NAIRLGVADVVADVVE 157
                 5554.5888888888876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2094.77
//
Query:       KIR61240.1  [L=325]
Description: hypothetical protein TK50_26265 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-36  124.1  45.7    1.3e-20   74.1  16.0    2.2  2  DMT_YdcZ  Putative inner membrane exporter, YdcZ


Domain annotation for each model (and alignments):
>> DMT_YdcZ  Putative inner membrane exporter, YdcZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1  16.0     7e-25   1.3e-20       3     138 ..      10     148 ..       8     149 .. 0.92
   2 !   56.0  21.7   2.7e-19   4.9e-15       3     138 ..     164     295 ..     162     301 .. 0.92

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 7e-25
    DMT_YdcZ   3 lllallaGallalqaaiNaqLgkklgsplaAalvsflvGlivllllllllrks.aalaalk..svpwwallGGllGavfvtlnillvpklGaaltvvlv 98 
                 l+  +l+G++ a+qaa Na Lg++ g+p+  al + l G++v+l+ ll l ++ a l+al+  ++pww +lGGl Ga++vt+++++vp lG+a+++++ 
  KIR61240.1  10 LATVVLGGVASAAQAAGNAVLGERAGDPILGALANNLGGCLVVLVGLLGLPSTrAGLDALRraRLPWWSYLGGLGGAAIVTVATYVVPVLGIAVFTIAQ 108
                 567899*************************************9999988866645555543378********************************** PP

    DMT_YdcZ  99 llGqllaslliDhfGlfgvekrplsltrllGlllllaGvv 138
                 ++G  l++l+ D+ Gl  + + +l+  r++G+ll +++v+
  KIR61240.1 109 VAGGSLGGLAADRAGLAPLGRLRLTGPRVAGALLGVLAVA 148
                 **********************************999987 PP

  == domain 2  score: 56.0 bits;  conditional E-value: 2.7e-19
    DMT_YdcZ   3 lllallaGallalqaaiNaqLgkklgsplaAalvsflvGlivllllllllrksaalaalksvpwwallGGllGavfvtlnillvpklGaaltvvlvllG 101
                 +l+a+++Ga++a+q+a+N++++ + g++ aA +v+f+vG+ v++l++ +++  +  a +   +w+++lGGl G+ +v++ +l v ++G+  t +++++G
  KIR61240.1 164 VLIAVAGGAAVAVQSALNGRVSAA-GTTTAAIAVNFAVGTPVVVLVAAFVGAFSGPAPTWPHEWFLYLGGLYGVGIVLALMLGVRAVGVLRTGLALVAG 261
                 799*******************99.55************************98677777889************************************* PP

    DMT_YdcZ 102 qllaslliDhfGlfgvekrplsltrllGlllllaGvv 138
                 ql ++ll+D    +      l++  l+G+ll l++vv
  KIR61240.1 262 QLGGALLLDV---LLPGGAGLRWPVLVGALLTLLAVV 295
                 *********6...455667788999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2271.07
//
Query:       KIR61241.1  [L=157]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-20   73.1   6.2    2.7e-20   72.2   6.2    1.5  1  bPH_6     Bacterial PH domain
  ------ inclusion threshold ------
       0.19   11.5   4.6       0.63    9.9   4.6    1.9  1  DUF4190   Domain of unknown function (DUF4190)


Domain annotation for each model (and alignments):
>> bPH_6  Bacterial PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   6.2     3e-24   2.7e-20       1      72 [.      71     141 ..      71     142 .. 0.99

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 3e-24
       bPH_6   1 RprvrvdpdGvevrnlfrtrrlpWsaiagvrfpegrrlarldlrdgelvplpavqlgddpelvadalrrlrd 72 
                 Rprv++d+ Gv+vrn++++ +lpW+ ++gvrf++g+++a l+l d++lvp+ a q++d+ el+++ +r+lr+
  KIR61241.1  71 RPRVEADALGVRVRNVLGSYELPWEVVRGVRFDRGAPWASLELHDDDLVPMVALQAADK-ELAVEGVRALRR 141
                 9**********************************************************.**********95 PP

>> DUF4190  Domain of unknown function (DUF4190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.6     7e-05      0.63      25      59 ..      28      69 ..      15      70 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 7e-05
     DUF4190 25 ilGhvAlrqirrsg......erGkglAiaGi.vlGwigllll 59
                ++  vA +    +g      +rG+ lA+aG+ vlG++g+ll+
  KIR61241.1 28 VFSLVATSLAGPTGngygtfQRGDQLAMAGLgVLGALGILLF 69
                55555555555555556677***********889*****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1165.57
//
Query:       KIR61242.1  [L=215]
Description: translation initiation factor IF-3 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-33  113.2   0.1    7.1e-33  112.4   0.1    1.4  1  IF3_C     Translation initiation factor IF-3, C-terminal doma
    2.9e-30  104.3   0.0    4.8e-30  103.6   0.0    1.4  1  IF3_N     Translation initiation factor IF-3, N-terminal doma
  ------ inclusion threshold ------
       0.05   13.3   0.0      0.076   12.7   0.0    1.2  1  mIF3      Mitochondrial translation initiation factor


Domain annotation for each model (and alignments):
>> IF3_C  Translation initiation factor IF-3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.1   1.2e-36   7.1e-33       2      85 ..      78     161 ..      77     162 .. 0.98

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 1.2e-36
                 -EEEEEEESS--HHHHHHHHHHHHHHHHHT-EEEEEEE--S-TTSHHHHHHHHHHHHHHHTTTTEEEEEEEEE-SSEEEEEEEE CS
       IF3_C   2 evKEiklrpkidehDlevKlknarkFLeegdkvKvtlrfrGReiahkelgkevleriaeeleevakvekkpklegrqmimvlap 85 
                  +KE+klrpkid hD+e+K  ++ +FL+ gdkvKvt++frGRe +++elg ++l+r+ +e++e++ ve +pk++gr+mimvlap
  KIR61242.1  78 VIKEMKLRPKIDPHDYETKKGHVVRFLKAGDKVKVTIMFRGREQSRPELGYRLLRRLESEITELGYVEAAPKQDGRNMIMVLAP 161
                 69*********************************************************************************9 PP

>> IF3_N  Translation initiation factor IF-3, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.0     8e-34   4.8e-30       1      70 []       1      70 [.       1      70 [. 0.99

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 8e-34
                ETTS--SSEEEEE-SSS-EEEEEEHHHHHHHHHHHTSEEEEEESSSSS-EEEEE-HHHHHHHHHHHHHHH CS
       IF3_N  1 iNeqIrarevrlvdedGeqlGvistreAlrlaeekgldLVevspnaepPVcrimdygkfrYeqkkkekea 70
                +NeqIrarevrlv+ +Geq+G+++++ Al+la + +ldLVev+p+a pPVc++md+gkf+Ye  +k++ea
  KIR61242.1  1 MNEQIRAREVRLVGPEGEQVGIVPLERALQLAADVDLDLVEVAPMARPPVCKLMDFGKFKYESALKAREA 70
                7*******************************************************************96 PP

>> mIF3  Mitochondrial translation initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.3e-05     0.076     104     166 ..      53     117 ..      46     126 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
        mIF3 104 LlelG..vakkklekk.ekaekkksslKeikvsWqIsldDLkkQKanEIekllkkgekvliyiddk 166
                 L++ G  + + +l+ +  +++++++ +Ke+k+  +I ++D +  K   + + lk g kv + i  +
  KIR61242.1  53 LMDFGkfKYESALKAReARRNQQQTVIKEMKLRPKIDPHDYETKKG-HVVRFLKAGDKVKVTIMFR 117
                 556665444444444414667778999*************998666.58899***99999877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1417.37
//
Query:       KIR61243.1  [L=64]
Description: 50S ribosomal protein L35 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-22   80.1   9.3    1.4e-22   79.9   9.3    1.0  1  Ribosomal_L35p  Ribosomal protein L35
  ------ inclusion threshold ------
      0.057   12.5   2.9      0.065   12.3   2.9    1.0  1  NPIP            Nuclear pore complex interacting protein (NPI


Domain annotation for each model (and alignments):
>> Ribosomal_L35p  Ribosomal protein L35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   9.3   1.6e-26   1.4e-22       1      61 []       2      62 ..       2      62 .. 0.99

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 1.6e-26
  Ribosomal_L35p  1 PKmKThkgakKRfkvtgsGkikrkkagkrHlltkKstkrkrrlrktalvskadakrlkklL 61
                    PKmK+h g+ KR+kvtg+Gki + +agkrHll+kKs++r+rrl +t+ ++kad+kr+kklL
      KIR61243.1  2 PKMKSHTGMGKRVKVTGKGKIVAEQAGKRHLLEKKSSTRTRRLTGTVELAKADTKRIKKLL 62
                    9**********************************************************98 PP

>> NPIP  Nuclear pore complex interacting protein (NPIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.9   7.2e-06     0.065     102     158 ..       3      59 ..       1      62 [. 0.95

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.2e-06
        NPIP 102 kmkvttkvnrhdkinGkrktakehlrklsmkereqaekerqlseaeenGkldmkkir 158
                 kmk  t + +  k+ Gk k   e+ +k ++ e++ + + r+l+ + e  k d k+i+
  KIR61243.1   3 KMKSHTGMGKRVKVTGKGKIVAEQAGKRHLLEKKSSTRTRRLTGTVELAKADTKRIK 59 
                 8999***************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 491.40
//
Query:       KIR61244.1  [L=130]
Description: 50S ribosomal protein L20 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-43  147.6   6.6    1.4e-43  147.4   6.6    1.1  1  Ribosomal_L20  Ribosomal protein L20


Domain annotation for each model (and alignments):
>> Ribosomal_L20  Ribosomal protein L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.4   6.6   7.7e-48   1.4e-43       1     107 []       3     109 ..       3     109 .. 0.99

  Alignments for each domain:
  == domain 1  score: 147.4 bits;  conditional E-value: 7.7e-48
                    XXX.XXXXXXXXXXXXX--SSS---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHCCTTS---HHHHHHH CS
  Ribosomal_L20   1 RvkrgvaarkrrkkilklakgyrgrrsklyrvakqavekalqyayrdRkkkkrdfrklwitrinaaarenglsYskfingLkkanielnRkvLadl 96 
                    Rvkr+v+a+k+r+ +l+ a+gyrg+rs+lyr ak++v +++qyayrdR+++k dfr+lwitrina+ar+ng++Y+++i+gL+ a++e++Rk+Ladl
     KIR61244.1   3 RVKRAVNAQKKRRTLLETASGYRGQRSRLYRKAKEQVLHSMQYAYRDRRDRKGDFRQLWITRINAGARANGMTYNRLIQGLRLAGVEVDRKILADL 98 
                    9*********************************************************************************************** PP

                    HHH-HHHHHHH CS
  Ribosomal_L20  97 AindpeaFkal 107
                    A+nd++aF+a+
     KIR61244.1  99 AVNDAAAFAAI 109
                    ********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 968.11
//
Query:       KIR61245.1  [L=286]
Description: RNA methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-33  116.0   0.0    2.1e-33  115.5   0.0    1.2  1  SpoU_methylase  SpoU rRNA Methylase family
    1.5e-10   41.2   0.0    2.1e-09   37.5   0.0    2.3  2  SpoU_sub_bind   RNA 2'-O ribose methyltransferase substrate b


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.0   2.4e-37   2.1e-33       2     142 .]     132     276 ..     131     276 .. 0.96

  Alignments for each domain:
  == domain 1  score: 115.5 bits;  conditional E-value: 2.4e-37
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST.T-SEGCCS.... CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl.kgkslsei.... 91 
                     l+ vl ei+dpgN G+++Rta+a+ga ++v+ + +++d++n + +ra+ag+l++++++++++  +++++l+ +g+a++at++ ++++l+++    
      KIR61245.1 132 LVAVLAEIRDPGNAGTVLRTADAAGAGAVVFAG-DAVDPYNGKCVRASAGSLFHVDVVRAGDPLAVVAALRAAGLAVLATTGyGDRDLDDLadvg 225
                     6789**********************9999977.999*********************************************8888999777778 PP

                     HHHTTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase  92 dlkekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
                     +l+ ++a++fG+E +Gl++ l ++ad  v++p +g++eSLN+a A+a++ly
      KIR61245.1 226 ALATPTAWLFGSEAHGLPDGLTAAADARVRVPLHGRAESLNLAAAAAVCLY 276
                     899***********************************************9 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   2.3e-13   2.1e-09       1      73 [.      47     118 ..      47     121 .. 0.94
   2 ?    1.2   0.0     0.049   4.4e+02       7      24 ..     121     138 ..     120     158 .. 0.75

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 2.3e-13
  SpoU_sub_bind   1 liyGlhaVleaLksgrriekllvtegradkrleellklakkrgikvelvdkekLdklsgtanHQGvvaevkpl 73 
                    l +G +aV+eaL+ +  + +l+ t+ + d++  +l ++a   +++v +v+++ L +l++t+ +QG+va+++ l
     KIR61245.1  47 LAEGPQAVREALARPGTVAELFGTPAALDRH-ADLAARAVVDDVPVSEVTDDALAALAETVAPQGLVAVCRHL 118
                    679***********888*********99999.7*************************************865 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.049
  SpoU_sub_bind   7 aVleaLksgrriekllvt 24 
                    +  eaL++g+r++++l +
     KIR61245.1 121 PLSEALAAGPRLVAVLAE 138
                    578********8888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2133.18
//
Query:       KIR61246.1  [L=359]
Description: phenylalanyl-tRNA synthetase subunit alpha [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.7e-101  337.7   0.0   4.4e-101  337.5   0.0    1.1  1  tRNA-synt_2d     tRNA synthetases class II core domain (F)
    2.9e-16   59.1   0.1      5e-16   58.4   0.1    1.4  1  Phe_tRNA-synt_N  Aminoacyl tRNA synthetase class II, N-termin


Domain annotation for each model (and alignments):
>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.5   0.0  4.9e-105  4.4e-101       2     245 .]     109     355 ..     108     355 .. 0.98

  Alignments for each domain:
  == domain 1  score: 337.5 bits;  conditional E-value: 4.9e-105
                   .-TSSCTSCTSHSB-SHHHHHHHHHHHHHHCTTCEESSTTSEEEHHHHTSTTTSTTTSHHHCHTTSEBTCTSSS-ECESEEE-SSTHHHHHHHHTTS CS
  tRNA-synt_2d   2 idvtlpgkrieagklhpltkvleeikeiflelgfeevegpevesefynfdaLnvpqdhpaRdmqdtFylkkpekaveekllLRthttavqirtlekk 98 
                   +dvtlp +r  +g++hpl++++e+i+++f+ +g+e++egpeve e+ nfdaLn+p dhpaR + dtF +  p+ a ++ l+LRtht++vq+rt+ ++
    KIR61246.1 109 VDVTLPYDRRPRGARHPLSTLMEQISDLFVGMGYEVAEGPEVELEWTNFDALNIPADHPARGLMDTFHIAPPAGADSSGLVLRTHTSPVQARTMLAR 205
                   8************************************************************************************************ PP

                   -SSEEEEEEEEEEBSST-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHHHHHHCTSTEEEEEEECEETTEEEEEEEEEEE..CCSSSSEEEEEEEE CS
  tRNA-synt_2d  99 kppikiisigrvfRrdavDathlaeFhqveglvvdenvsladlkgvleellkklfgaevkvrfrpsyfpftePsaevdvyl..vekkkkwlEllgaG 193
                   kppi+++++grv+R+d++Dath ++Fhqveglvvd+++++a+l g+l+++++++fg+ +k+r+rp+yfpftePsae+dv++  ++++ +w+E++g+G
    KIR61246.1 206 KPPIYVVVPGRVYRTDELDATHAPVFHQVEGLVVDKGITMAHLRGTLDHFARAMFGEGAKTRWRPHYFPFTEPSAEFDVWFpeHRDGPRWVEWGGCG 302
                   *********************************************************************************88888899******** PP

                   EE-HHHHHHTT-..TTSEEEEEEEEHHHHHHHHHT-SSGHHHHTT.HHHHGGG CS
  tRNA-synt_2d 194 mvrpevleavgid.eevsgfafGlGveRlamlkygieDiRelvendlrflrqf 245
                   mv+p+vl+a+gid e +sgfafG+G++R+ m+++g++D+R++ e d+rf+r f
    KIR61246.1 303 MVNPRVLRACGIDpEVYSGFAFGMGIDRTVMFRHGVSDMRDMAEGDVRFTRAF 355
                   *************************************************9875 PP

>> Phe_tRNA-synt_N  Aminoacyl tRNA synthetase class II, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.1   5.6e-20     5e-16       2      69 .]      37     104 ..      36     104 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 5.6e-20
                      CCCCCCCCHHHHHCCCCCCCCCCCTTTTCCCCTTTHHHHCCHHHHCCCCCCCCCHHHCCHCCHHHHHC CS
  Phe_tRNA-synt_N   2 dleeLeelRvkyLGkkGeltellkelgklppeeRkeaGkliNelKqeieealeerkeeleaaeleakl 69 
                      d ++L +lR ++LG++++++ + +e+g+lpp  +++aGk++Ne++ +ie+a+++r e l +++ ++ l
       KIR61246.1  37 DPDALTALRPAHLGDRSPVALARREIGALPPAAKADAGKRVNEARRAIEAAYAARAEVLDREQAQRVL 104
                      789**********************************************************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2689.19
//
Query:       KIR61247.1  [L=848]
Description: phenylalanyl-tRNA synthetase subunit beta [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-69  230.7   0.0    1.2e-68  230.2   0.0    1.2  1  B3_4             B3/4 domain
      2e-59  200.6   0.0    2.9e-59  200.1   0.0    1.3  1  tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM 
    3.6e-22   78.6   0.0    6.6e-22   77.7   0.0    1.5  1  FDX-ACB          Ferredoxin-fold anticodon binding domain
    1.8e-18   66.4   0.0    3.8e-18   65.4   0.0    1.5  1  tRNA_bind        Putative tRNA binding domain
    1.1e-16   60.9   0.0    8.8e-16   58.0   0.0    2.2  2  B5               tRNA synthetase B5 domain


Domain annotation for each model (and alignments):
>> B3_4  B3/4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.2   0.0   3.2e-72   1.2e-68       1     174 []     223     396 ..     223     396 .. 0.99

  Alignments for each domain:
  == domain 1  score: 230.2 bits;  conditional E-value: 3.2e-72
                 TSSEEEEEEEES--.-----HHHHHHHHHTT-----HHHHHHHHHHHHHT--EEEEEGGGTBTEEEEEE--TTEEEEBTTS-EEEE-TTSEEEETEEEE CS
        B3_4   1 acpryaarvlrgvkktapspewlqrrLrragirpinnvVDitNyvmlelgqPlhafDldkiqgdivvrlakegeklvtldgkereldeedlviadsekp 99 
                 +c+r+aar++rg+++ta++p w+++rL+ ag+r+i++ VDitNyvmlelgqP+hafD+++i+g++vvr+a +gek++tldg  r+l++ed+vi+d+++p
  KIR61247.1 223 GCDRFAARMVRGIDPTAQTPGWMRQRLTVAGVRSISLPVDITNYVMLELGQPMHAFDAARITGPLVVRRAAAGEKVTTLDGVARTLTAEDMVICDDTGP 321
                 59************************************************************************************************* PP

                 EEETTTEEBTTTB--TT--EEEEEEEE--HHHHHHHHHHTT---HHHHHHHH---TTTHHHHHHHHHHHHHHHH- CS
        B3_4 100 vslagvmggeeskvsedTknvfleaaafdpvsirktarrlglrseaskrfergvdpekleaaldravallselcg 174
                 vsla vmgge s+v ++T++v++eaa++dpv++ +tarr++l sea+kr+ergvdp++  +a++rav ll+ ++g
  KIR61247.1 322 VSLAAVMGGETSEVVASTTDVLFEAAHWDPVMVGRTARRHKLFSEAAKRWERGVDPALPLVAIERAVGLLTAHAG 396
                 **********************************************************************99876 PP

>> tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.1   0.0   8.2e-63   2.9e-59       2     214 .]     501     738 ..     500     738 .. 0.93

  Alignments for each domain:
  == domain 1  score: 200.1 bits;  conditional E-value: 8.2e-63
  tRNA_synthFbeta   2 pstlPkapttegelnkeqklrrklrdllagaGlnEvitysfvsekeldkll..eddderkavelanPlsedqsvlRtsLlpglLevlarNlarg 93 
                      ps+lP+ap ++g l+ +q++rr++++ la+ G++Ev+  +fv  + +d l   +dd++r av++anPlse+ ++lRt+Ll  lL  l+rNl rg
       KIR61247.1 501 PSVLPTAPPGRG-LTWQQRRRRAVARSLAERGYVEVLAHPFVAGSLADLLGlpADDPRRAAVRVANPLSEEEPLLRTTLLGPLLGILKRNLGRG 593
                      99**********.***************************************99**************************************** PP

  tRNA_synthFbeta  94 nedvrlFEigkvflk..................dseeel........peeerhlaivltgkreeeswsekaravdfydlkgivealleslgi.. 159
                       +d++l+Eig vf++                       +        p+++rh+a+vltg+ e+++w++++r+++++d+ ++ +a+l++  +  
       KIR61247.1 594 HRDLALYEIGAVFHPcpgvgappamgvdrrptdA----EfaaadavvPDQPRHVAVVLTGDVEPAGWWGAGRPAGWADAVEAGRAVLAAADLpa 683
                      ***************6666666666666555550....155555566*********************************************98 PP

  tRNA_synthFbeta 160 ekvefepaehpalhpgrsAeikvdgkevGvlGelhpevleafdlkqrvyvfEldl 214
                      ++ve+++aeh+++hpgr+Ae+ vdg++vG++Gelhp+vl+a++l++r++++Eldl
       KIR61247.1 684 DRVEVRAAEHAPWHPGRCAELLVDGVVVGHAGELHPAVLAALELPKRTSAMELDL 738
                      88***************************************************98 PP

>> FDX-ACB  Ferredoxin-fold anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   1.8e-25   6.6e-22       1      94 []     753     846 ..     753     846 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 1.8e-25
                 -SS--EEEEEEEEEESSS-HHHHHHHHHHHH-TTEEEEEEEEEEESTTS-SSEEEEEEEEEE--SSS---HHHHHHHHHHHHHHHHTT.T-BES CS
     FDX-ACB   1 SkfPaverDlalvvdekveaaelleavreaagellesvqlfDvYrgkklaegkkSlalrltlqskertLtdeevnaaiekvvealekklgaelR 94 
                 S fP+   D+alvvde v+aa++ +a+ e agelle v+lfDvY  ++l++g++Sla++lt+++++rtLt ee  aa +  v++ ++++ga+lR
  KIR61247.1 753 SGFPPALIDVALVVDERVPAAQVQQALVEGAGELLEGVRLFDVYASEQLGAGRRSLAYKLTFRAPDRTLTVEEAVAARDAAVARAAERFGATLR 846
                 6799999**************************************************************************************9 PP

>> tRNA_bind  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   1.1e-21   3.8e-18       1      93 [.      48     151 ..      48     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 1.1e-21
                 EEEEEEEEEEEETTSST.EEEEEEEESSSS....EEEEEESCTTTSTHHHHTTEEEEEETTSESE.........EETTEEESSEE-EEEC..CESSCEE CS
   tRNA_bind   1 lrvGkvleaeehpnadk.LlvlkvdvGeee....prqivsgaknvyepeelvakkvvvvanlkpk.........klrGveSeGMilsaee..ldekevg 83 
                 l+vG+vl++ee+ +++k ++++ vdvG ++    p++iv+ga+n+++     +++vv+++              k++G +S+GMi+sa+e  l ++++g
  KIR61247.1  48 LVVGEVLDIEELTGFKKpIRFCRVDVGAANgtgePQEIVCGARNFAP----GDRVVVILPGGV-LpggfaigarKTYGRNSHGMICSAKElgLGDDHSG 141
                 79************************99988888*************....445555554322.1357777888******************99999** PP

                 EEEESST--T CS
   tRNA_bind  84 ilelpadvea 93 
                 i+ lp+d++a
  KIR61247.1 142 IIVLPEDTPA 151
                 *****99875 PP

>> B5  tRNA synthetase B5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.25   8.8e+02       3      34 ..       3      36 ..       1      98 [. 0.82
   2 !   58.0   0.0   2.5e-19   8.8e-16       1      67 []     415     497 ..     415     497 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.25
                EEHHHHHHHHT..S---HHHHHHHHHHTT-E.EE CS
                xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
          B5  3 lrvekinkllG..idlseeeiikiLkrlgcerie 34
                ++v+ ++++l    dl++++ ++ L  lg+e+++
  KIR61247.1  3 VSVSWLREYLDlpADLPAADLEQALVDLGIEVES 36
                566666666663349999***********99654 PP

  == domain 2  score: 58.0 bits;  conditional E-value: 2.5e-19
                 EEEEHHHHHHHHTS---HHHHHHHHHHTT-E.................EESSTTCEEEE--TT-TT--SHHHHHHHHHHHH-G CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
          B5   1 vslrvekinkllGidlseeeiikiLkrlgce................riekdkdlllVtvPswRsDlereeDliEEvaRlyGY 67 
                 v+l v+   + +G+ +s+e+++ +L+++gc+                ++  ++d+l+V +PswR+Dl++++Dl+EEv+Rl GY
  KIR61247.1 415 VTLPVDLPGRRVGVAYSPERVVSLLEQVGCHvtrgvdrlgedpgtagVPAGGADVLTVVPPSWRPDLTDPADLVEEVVRLDGY 497
                 57788888899************************************999********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (848 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 5682.34
//
Query:       KIR61248.1  [L=734]
Description: hypothetical protein TK50_26315 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-06   28.8  17.9    1.7e-05   25.1   1.2    3.5  3  HEAT_2          HEAT repeats
     0.0042   17.2   2.7        9.8    6.7   0.1    4.2  3  HEAT            HEAT repeat
  ------ inclusion threshold ------
        8.5    4.3   5.2         13    3.7   5.2    1.2  1  Sporozoite_P67  Sporozoite P67 surface antigen


Domain annotation for each model (and alignments):
>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.3       0.4   2.4e+03       4      26 ..     289     311 ..     286     356 .. 0.67
   2 !   25.1   1.2   2.9e-09   1.7e-05      17      87 ..     435     509 ..     428     510 .. 0.82
   3 !   12.1   3.7   3.2e-05      0.19      16      88 .]     541     617 ..     534     647 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.4
      HEAT_2   4 LlqalendpdpevrraairaLgr 26 
                 L ++le+    ++r +a+r+L+ 
  KIR61248.1 289 LTERLERLLPRQLRERAARVLAA 311
                 55666666667788888888873 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 2.9e-09
      HEAT_2  17 rraairaLg..rignpealpaLvellededpavRraaaeaLgai...gdpealpaLkellddddddvvReaAaeaL 87 
                 rr  +++    ++ ++++l +L +l++d  p vR+aaa a g+    g ++al++  +l++ ++ + vR+aAa+aL
  KIR61248.1 435 RRSLLEVAWsdWWLPEQLLGWLGSLVRDGTPGVRQAAAGAVGWSaahGVHAALRVVDQLAR-ERRAGVRQAAAIAL 509
                 555555555656778899************************884435799*******886.688899*****998 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 3.2e-05
      HEAT_2  16 vrraairaLgrignpealpaLvellededpavRraaaeaLgai...g.dpealpaLkellddddddvvReaAaeaLa 88 
                 v+ra +  L+r+ +++al  L++++e    +    +++ L+++   g   ++lpaL++++ d+d+++vR  A +aL+
  KIR61248.1 541 VARAYALGLARLWPETALGQLRRVAEARMQRRNNSVVRGLVEVyvgGhAASVLPALAQWAVDEDEPEVRLHAGRALR 617
                 77777778888888888888888888888888888888888875542246688999999988888999988888874 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0      0.01        60       8      25 ..     459     476 ..     455     476 .. 0.83
   2 ?    3.0   0.4     0.026   1.6e+02      15      28 ..     500     513 ..     487     514 .. 0.83
   3 !    6.7   0.1    0.0016       9.8       1      28 [.     592     620 ..     592     622 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.01
                 HHT-SSHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLg 25 
                 l +D  p VR+aAa a+g
  KIR61248.1 459 LVRDGTPGVRQAAAGAVG 476
                 348999********9987 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.026
                 HHHHHHHHHHHHHH CS
        HEAT  15 eVReaAakaLgala 28 
                  VR+aAa aL+ +a
  KIR61248.1 500 GVRQAAAIALVGMA 513
                 59********9775 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0016
                 HHHHHHHHHT-.SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsD.pspeVReaAakaLgala 28 
                 +lP+l ++  D ++peVR  A +aL  la
  KIR61248.1 592 VLPALAQWAVDeDEPEVRLHAGRALRVLA 620
                 69******96659999*********9998 PP

>> Sporozoite_P67  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   5.2    0.0022        13     180     229 ..     349     397 ..     337     474 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0022
  Sporozoite_P67 180 avsvsgvvgvpGlgvpG.vGvpGvggvgvlpgvgvprvgvapgvGvgglgg 229
                     a++ +g+ gv    +p   GvpG  g+g++pg   +++ +ap +G +g  g
      KIR61248.1 349 ALAAPGLAGVGLEPAPDpGGVPGPPGAGAVPGFPFAGAPLAPPTGRSG--G 397
                     44555555443333443148*************************994..2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 5266.27
//
Query:       KIR61249.1  [L=275]
Description: hypothetical protein TK50_26320 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          2    8.6   7.2        1.3    9.3   0.2    3.1  4  TetR_C_30  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_C_30  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.19   3.3e+03      84     105 ..     104     125 ..      75     129 .. 0.49
   2 ?   -1.5   0.0      0.16   2.8e+03      24      44 ..     143     163 ..     140     169 .. 0.77
   3 ?    1.7   0.1     0.016   2.8e+02      28      57 ..     167     196 ..     164     200 .. 0.85
   4 ?    9.3   0.2   7.2e-05       1.3      34      62 ..     204     232 ..     200     233 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.19
   TetR_C_30  84 dtgrld.ilsggecssadleali 105
                 ++ + d + ++++++s +le+++
  KIR61249.1 104 ER-AADlAREHEPHRSHELERAL 125
                 32.22224444444445555554 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.16
   TetR_C_30  24 llarvysepdeelrellaeey 44 
                 ++ +v ++pde++re l+++ 
  KIR61249.1 143 FTVQVRVSPDERVRERLRPYW 163
                 567888899999999887765 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.016
   TetR_C_30  28 vysepdeelrellaeeydpvarrfiaalrr 57 
                 +  e d el++l a++ d+++rr  + lr+
  KIR61249.1 167 IRLECDHELQQLRARHTDELTRRWCEVLRA 196
                 556678899**************9999986 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 7.2e-05
   TetR_C_30  34 eelrellaeeydpvarrfiaalrralPdl 62 
                 +++++l+ e++++v+rr++ + r+a+P+l
  KIR61249.1 204 AHAARLAGEQFAEVFRRYVTERREAVPEL 232
                 7899***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1938.22
//
Query:       KIR61250.1  [L=333]
Description: N-acetyl-gamma-glutamyl-phosphate reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-27   95.0   0.2    1.3e-26   93.4   0.0    1.9  2  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
    4.6e-16   59.4   0.1    9.1e-16   58.5   0.1    1.5  1  Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation dom
     0.0071   16.5   0.0      0.016   15.3   0.0    1.7  1  DapB_N           Dihydrodipicolinate reductase, N-terminus
  ------ inclusion threshold ------
      0.078   13.2   0.5       0.25   11.5   0.5    1.8  1  ACP_syn_III_C    3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
       0.71   10.1   3.4        3.4    7.9   3.4    2.1  1  DUF2749          Protein of unknown function (DUF2749)


Domain annotation for each model (and alignments):
>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.0   3.6e-30   1.3e-26       1     114 [.       4     128 ..       4     137 .. 0.95
   2 ?   -1.7   0.0         1   3.7e+03      63      79 ..     162     178 ..     143     198 .. 0.67

  Alignments for each domain:
  == domain 1  score: 93.4 bits;  conditional E-value: 3.6e-30
                     EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTSEEEE CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapklaeagvkviD 95 
                     +va+ Ga+Gy G ellrl++ hpe++lv+++++s+ aG +++++++ + +g dl++ ++++++l+++d+vflalp+g s++la++l  + v+v+D
      KIR61250.1   4 RVAVAGASGYAGGELLRLIAGHPELDLVTATAHSQ-AGAPVTAVHP-QLTGLDLVFAATEPAALADADLVFLALPHGESAALAAAL-PESVRVVD 95 
                     79*********************************.**********.67889*******************************999.999***** PP

                     SSSTTTTST..............TSEBE-HHHH CS
  Semialdhyde_dh  96 lssdfRlkd..............davyvlpevn 114
                     l +d+Rl+d               +vy+lpe+ 
      KIR61250.1  96 LGADHRLRDaaawsryyggehagAWVYGLPELP 128
                     *******************************95 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1
                     GCTT-SEEEE-SCHHHH CS
  Semialdhyde_dh  63 elkevdivflalpagvs 79 
                     +++ +d+v+ a+++   
      KIR61250.1 162 AVAPADVVVVAASGTSG 178
                     55667777777766544 PP

>> Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.1   2.5e-19   9.1e-16       1     182 [.     154     302 ..     154     304 .. 0.94

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 2.5e-19
                      HHHHHHC.TT.EEEEEEEEEEEGGGCHHHHHHHHHHHHHHHHHSTTS.CTTTSSHHTTSEESTCSTBTTTTCHCBHHHHHHHHHHHHHCTESCS CS
  Semialdhyde_dhC   1 LkPLlda.lgelervivatyqavSGaGkkgvreLlkqvaelqrsdeakpgvfgvpiagNlipyidkeedkgepetreelkavaetkkileftek 93 
                      L+PL++a  + +  v+v++ +++SGaG++                 ak+   g++++g l py+++  +++ pe+++  +a     + l+ t+ 
       KIR61250.1 154 LAPLVAAgAVAPADVVVVAASGTSGAGRA-----------------AKAHLLGSEVMGDLSPYKVG-AHQHVPEIKQATGA-----TSLSLTP- 223
                      89*****99999****************7.................********************.99**9999987765.....5689999. PP

                      EEEEEEEESBSSEEEEEEEEEESSSHHHHHHHHHHHHCSTTEEEEESSHCHHSSHHHHTTCSSSEEEEEEEEETTCTTEEEEEEEEETT CS
  Semialdhyde_dhC  94 vsatcvrVPvlrGhseavtiklklkdveveeveellaaapevkvvvneeedrPtpaavaggtnsvsVGRirkdemgdeglklvvvgDNl 182
                           v++P+ rG++++vt+   + d++ ++v+++ +a+ +++v+v +e+  P +aa  g  ns++     +d +  + + +v+++DNl
       KIR61250.1 224 -----VLAPMPRGILATVTAVP-AGDADPRAVLAAAYAD-SAFVHVLPEGTWPHTAATLG-ANSCHLQ-ATVDVDSGR-VIVVSAIDNL 302
                      .....9***************9.59**************.*******************9.7******.899998887.*********9 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.4e-06     0.016       1      36 [.       3      38 ..       3      94 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.4e-06
                EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTC CS
      DapB_N  1 ikvavvGasGrmGkevvkaveeaedlelvaavdrke 36
                i+vav+GasG  G e+++++  +++l lv a  +++
  KIR61250.1  3 IRVAVAGASGYAGGELLRLIAGHPELDLVTATAHSQ 38
                79*****************************99987 PP

>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5     7e-05      0.25      43      79 ..     138     176 ..     126     188 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7e-05
                    HHH-B-G..GGHHHHHHHHHHHTTSS-TT-EEEEEEEET CS
  ACP_syn_III_C  43 deyGnts..aasiplaLdeaveegklkpgdlvllvgfGa 79 
                     +++nt+  aa i laL+ +v+ g + p d v++++ G 
     KIR61250.1 138 TRVANTGcyAAAITLALAPLVAAGAVAPADVVVVAASGT 176
                    456666433899**********************99774 PP

>> DUF2749  Protein of unknown function (DUF2749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.4   0.00094       3.4       5      41 ..     150     186 ..     147     193 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00094
     DUF2749   5 ilIvlviavaagagtilwlvvqpragtsgsgeaqReh 41 
                 i ++l+ +vaaga     +vv + +gtsg+g a ++h
  KIR61250.1 150 ITLALAPLVAAGAVAPADVVVVAASGTSGAGRAAKAH 186
                 44555556******9999*************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2549.41
//
Query:       KIR61251.1  [L=390]
Description: N-acetylglutamate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.3e-129  429.6  13.0   9.3e-129  429.4  13.0    1.0  1  ArgJ      ArgJ family


Domain annotation for each model (and alignments):
>> ArgJ  ArgJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  429.4  13.0  5.2e-133  9.3e-129       2     376 .]      11     390 .]      10     390 .] 0.95

  Alignments for each domain:
  == domain 1  score: 429.4 bits;  conditional E-value: 5.2e-133
                 EEEEXXSSS...SXXEEEEEEEEEEEE.EEEEEXXSSXXHHHHHHHHHHH.HHSEEEEEEEEEEXXXSXHHHHHHHHHHHHHHHHHHHTSX.......G CS
        ArgJ   2 aagvaagikkk.kkdlalivseepasa.aavfTknkvkAapvkvsrevlkkkkgaravvvnsgnANavtgeqGledaeemaeavaealgik.......e 91 
                 aagvaag+k+  + d+al+v++ p +  a+vfT n+vkAapv ++r+v++ +  arav++nsg ANa+tg +G++d++++ae++a+al  +       +
  KIR61251.1  11 AAGVAAGLKSGaAADVALVVNDGPDAGiAGVFTANRVKAAPVLWTRQVVRGGV-ARAVILNSGGANACTGPAGFQDTHATAEHTAAALTSAsprlrlgA 108
                 899******666***********87666*********************7554.*********************************955555565658 PP

                 GGEEEEEEEESSXXXXHHHHHHHHHHX....X....HHHHHHHXSSXSSXXEEEEEEEETEEEEEEEEEEXSSSXXXXEE--EEEEEE-----HHHHHH CS
        ArgJ  92 eevlvasTGviGerlpmekieagieklvekle....eeaaeAimTTDtvpKlaavevelgkevtiagiaKGaGmihPnmaTmLafittDaavsaealqe 186
                  +v+v+sTG+iGerlpm+k++ g+++++++l+    ++aaeAimTTDt pK++++    g+ +t++g+aKGaGm++P maTmL+++ttDa   ++al++
  KIR61251.1 109 GDVAVCSTGLIGERLPMDKLLPGVRAAIRALSrdggAAAAEAIMTTDTRPKTTVAA---GGGWTVGGMAKGAGMLAPAMATMLCVLTTDAVAGPAALDA 204
                 9****************************99888889**************99884...68************************************** PP

                 HHHHHHHHTGGGB-SSS---SS-EEEEEE--TTTT.STTHHHHHHHHHHHHHHHHHHHHHTSTT-S-EEEEEEEEESSHHHHHHHHHHHHT-HHHHHHH CS
        ArgJ 187 llkeavdksFnsisvDgdtSTnDtvlllAngaaeeeeedleefeealtevlqeLakqivrDGEGatklveveVkgakseeeAkkvaksvanssLvKtAl 285
                 +l++a++ +F++++ Dg++STnDtvlll++ga+   e++ +e+++a+t+ +++La+q+v+D+EGatk +++eV ga++e++A +v++sva+++LvKtAl
  KIR61251.1 205 ALRAACRVTFDRVDSDGCMSTNDTVLLLSSGAS-GVEPTEAELTAAVTAACHDLAQQLVADAEGATKQIAIEVVGAADEDDAVEVGRSVARNNLVKTAL 302
                 ********************************8.348999*********************************************************** PP

                 HTT---HHHHHHHHHHSSS---TTS-EE..TTEEEEETTEE----HHHHHHHHH-SSEEEEEE--SSSEEEEEEEE---HHHHHHHTT-XX CS
        ArgJ 286 fGeDanwGRilaavGyagaeldpekvsvllgevkvlekgepeevdeerakeilkeeeveievdlgegeeeatvwtcDLsyeYvkiNadYrt 376
                 fG+D+nwGRilaavG++ a+++p++++v++++v v+++g++   +e+r k  l+ ++v+i++dl++g ++atvwt DLs+ Yv+ N++Y+t
  KIR61251.1 303 FGNDPNWGRILAAVGTTAAAFEPDALDVAVNGVWVCRSGAA---AEDRSKVDLTGRDVTIRIDLHAGGAQATVWTNDLSHAYVHENSAYST 390
                 ***************************************87...699******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2662.23
//
Query:       KIR61252.1  [L=295]
Description: acetylglutamate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-48  164.7   0.4      3e-48  164.5   0.4    1.0  1  AA_kinase  Amino acid kinase family


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.5   0.4   1.7e-52     3e-48       2     240 ..      31     270 ..      30     271 .. 0.97

  Alignments for each domain:
  == domain 1  score: 164.5 bits;  conditional E-value: 1.7e-52
                 EEEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTHGE CS
   AA_kinase   2 rvVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaaglpa 100
                 ++VvK GG+++ d+e    r++a++   l+  g+k+vvVhGgg+++ ++l +  g++s++   glr+t  ea++v+++++++++g++lv  + a+g  a
  KIR61252.1  31 TLVVKYGGNAMIDPEL--QRAFAADMVFLRYVGIKPVVVHGGGPQISAMLGR-LGIDSEFRG-GLRVTTPEAMDVVRMVLVGQVGRELVGLINAHGPFA 125
                 68*******9999999..9*********************************.*********.************************************ PP

                 EEE-GGGTCEECCCE............HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESST CS
   AA_kinase 101 vglsaaaldateagr..........degsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydad 189
                 vgls+++ ++++a r          d+g++g+vesv+++a+ +l++ag +pv++  +  d +g l ++++Dt+aa+lA algA+kl++ltdV+G+y + 
  KIR61252.1 126 VGLSGEDAGLFTAVRrpayvdgepvDVGQVGDVESVNTSAVTDLIAAGRIPVISTVA-PDADGVLHNLNADTAAAALAIALGARKLVVLTDVPGLYANW 223
                 *******************************************************76.89999999********************************* PP

                 TTTCCTTCECCEEEHHHCHHCSSS.TTTHHHHCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 190 pkkvpdarllpeisvdeaeesaselatgGmkvkhpaalaaarrggipvvIt 240
                 p+ +    l++ei++de++e        Gm +k++a+l+a+r+g+  ++++
  KIR61252.1 224 PDTD---SLVSEITADELAE-LLPSLESGMVPKMEACLRAVRGGVPAAHVV 270
                 ****...*************.7777889****************8888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1832.22
//
Query:       KIR61253.1  [L=393]
Description: acetylornithine aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-104  349.7   0.0   2.2e-104  349.4   0.0    1.1  1  Aminotran_3      Aminotransferase class-III
      0.006   15.9   0.0      0.015   14.6   0.0    1.7  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.036   13.0   0.0       0.13   11.1   0.0    1.9  2  Aminotran_5      Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.4   0.0  3.7e-108  2.2e-104      10     405 ..      20     383 ..      12     384 .. 0.96

  Alignments for each domain:
  == domain 1  score: 349.4 bits;  conditional E-value: 3.7e-108
                  CEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHH CS
  Aminotran_3  10 llvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKla 107
                  +l++  + G++++d  g++y+Dl+++iav++lGhahP+vv+av+ q+a+l hvs +++  ep ++lae ll+la+    +vf+ansG+eA+e+A+Kl+
   KIR61253.1  20 PLALVSGSGAVVVDDAGREYVDLLGGIAVNALGHAHPAVVAAVSRQVATLGHVS-NLFVAEPPVALAELLLALAGR-PGRVFFANSGAEANEAAFKLS 115
                  57788899**********************************************.*******************99.77******************* PP

                  HHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCETTT CS
  Aminotran_3 108 rkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiqgeg 205
                  r        t +++++a  g+fHGrt+gal++tg+ +  ++ f p++ +v++++y d                 + al ++ +d +a vi+Ep+qge 
   KIR61253.1 116 RL-------TGRSHVVATVGGFHGRTMGALALTGQ-PAKADPFRPLPGDVTHVPYGD-----------------AAALAAAVTDATAMVILEPVQGEN 188
                  *9.......**************************.99999***************9.................78889999**************** PP

                  TSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-HHHHHHHHH CS
  Aminotran_3 206 GvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfgGnplacavala 303
                  Gvvv++p++la++r ++++h++ll+ DEvqtG+GrTG++fA++  gv+pD++tlaK+l+gGlp+ a la    ++ l+pgshg+TfgGnp+ ca+ala
   KIR61253.1 189 GVVVPPPGYLAEARRITARHGALLVLDEVQTGVGRTGHWFAHQAEGVEPDIVTLAKGLGGGLPIGACLAFGPAADLLRPGSHGTTFGGNPVSCAAALA 286
                  ************************************************************************************************** PP

                  HHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTCHHHHHHHHHCTEE-EEETTTEEEE---TT--HHHHHHHHHH CS
  Aminotran_3 304 vleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevkekeilkkakekGvlilsaGdnvirllppliitdeeidellei 401
                  v+ +i+ e ll++++++g++l+ g e+l +    +++vRg+Gl+++i l+++a      ++++++++G l+ ++ + virl+ppli t  ++d++l +
   KIR61253.1 287 VVSTIASEGLLDHVKRVGERLRRGVEALGHP--LVAQVRGAGLLLGIVLTADAA---GPLAAALRDAGFLVNPVQPGVIRLAPPLILTGGQADAFLAA 379
                  *****************************66..7*************9999998...579***********************************998 PP

                  HHHH CS
  Aminotran_3 402 lkka 405
                  l +a
   KIR61253.1 380 LPAA 383
                  8766 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.5e-06     0.015      37     213 ..      84     261 ..      59     352 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.5e-06
                      HHHHHHHHTT-SEEE.EES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHC.C--EEEEE-EBTT.....TBE-HHHHHHHS--S-T CS
  Beta_elim_lyase  37 Ledavaelfgkeaal.fvpqGtaAnsillkillqrgeevivtepahihfdetgaiael.agvklrdlknkea.....Gkmdlekleaaikevga 123
                      L++ + +l+g  + + f+ +G  An+ ++k+    g + +v   + +h ++ ga+a   + +k+ +++          + d+++l+aa++    
       KIR61253.1  84 LAELLLALAGRPGRVfFANSGAEANEAAFKLSRLTGRSHVVATVGGFHGRTMGALALTgQPAKADPFRPLPGdvthvPYGDAAALAAAVT---- 173
                      55556667888877725668*********998888999999999999*****99999966677776666551222222223444444444.... PP

                      TS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTS..SEEEEESSSTT--SS-EEEEE-HH CS
  Beta_elim_lyase 124 heekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyv..DsvtmslkKdllanvGgvlafrdd 213
                        + +++++l+      g  v ++ +l+e++ i+ ++g  l+lD       +   g+  +  +++v  D+vt+    +++ ++G+ laf  +
       KIR61253.1 174 --DATAMVILEPVQGENGVVVPPPGYLAEARRITARHGALLVLDEV--QTGVGRTGHWFAHQAEGVepDIVTLAKGLGGGLPIGACLAFGPA 261
                      ..5799*****98886544555678*******************63..33444555555555544322566665555666666666666555 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.2e-05      0.13      27     180 ..      59     220 ..      46     225 .. 0.68
   2 ?   -1.6   0.0      0.17     1e+03     251     299 ..     271     319 ..     269     326 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.2e-05
                  CCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-..STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBE CS
  Aminotran_5  27 nanvhrsvhhlgkeatkaveearekvaelina..eseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipld 122
                   a+v r+v +lg+  +  v e    +ael+ a      ++ f  +++ea++++ +    +l  + ++v t+ + h+ ++ + +l   + ak + ++  
   KIR61253.1  59 VAAVSRQVATLGHVSNLFVAEPPVALAELLLAlaGRPGRVFFANSGAEANEAAFKLS--RLTGRSHVVATVGGFHGRTMGALALT-GQPAKADPFRPL 153
                  566666666666666666666666666665431123356667777777777666544..38999999999999999998888887.557777766555 PP

                  TTSCBE.....GGGHHHH--TTEEEEEEESBETTTTEB--....HHHHHHHHHHTT-EEEEE-TTTT CS
  Aminotran_5 123 eegeld.....ldelekllnektklvaithvsnvtGtiqp....veeigklakkkgalvlvDaaqav 180
                  ++           +l++++++ t++v++  v+ + G++ p    ++e  ++  ++gal+++D +q+ 
   KIR61253.1 154 PGDVTHvpygdAAALAAAVTDATAMVILEPVQGENGVVVPppgyLAEARRITARHGALLVLDEVQTG 220
                  44444333344889999********************988233344445555568**********85 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.17
                  SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCTSTTEEE CS
  Aminotran_5 251 GTpnvagiiglgaaleyleeigleaiekhekelaeyllerlkslpgvrl 299
                  GT+   + ++++aal  ++ i  e    h k+  e+l+ ++++l++  +
   KIR61253.1 271 GTTFGGNPVSCAAALAVVSTIASEGLLDHVKRVGERLRRGVEALGHPLV 319
                  6666677789999999999999999999999999999999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2622.21
//
Query:       KIR61254.1  [L=308]
Description: ornithine carbamoyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-54  181.9   0.0    1.1e-53  181.5   0.0    1.1  1  OTCace    Aspartate/ornithine carbamoyltransferase, Asp/Orn b
    8.4e-42  142.7   0.0    1.2e-41  142.2   0.0    1.2  1  OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl


Domain annotation for each model (and alignments):
>> OTCace  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.5   0.0   1.2e-57   1.1e-53       2     156 ..     148     302 ..     147     303 .. 0.99

  Alignments for each domain:
  == domain 1  score: 181.5 bits;  conditional E-value: 1.2e-57
                 C.EEEEESSTTSHHHHHHHHHHHHCT-EEEEES-TTSSH-HHHHHHHHHHHHHHT-EEEEESSCHHHHTT-SEEEE--SSETTCCGGHHHHHHHHCCCS CS
      OTCace   2 glkiafvGdkknnvanslikllarlgmdvvlvaPkglepdkevleeakknakksggsititedleeavkgaDvvytdvwvsmgeekereerlkklkdyq 100
                 g ++++vGd+ nn+a+s + + a  gm+v++++P+g++pd+ev+++a+k+a+ +ggs+ +  d+ +av +aDv+ td+w+smg+e++ ++r+  + +yq
  KIR61254.1 148 GRTLVYVGDAANNMAQSYLLAGATAGMHVRVAGPDGFDPDPEVVARAEKIAAGTGGSVRVLRDPVAAVRDADVLATDTWTSMGQEDDGLDRITPFLPYQ 246
                 889******99**************************************************************************************** PP

                 B-HHHHHHS-TT-EEEE-S---BTTTB-HHHHTSTTBHHHHHHHHHHHHHHHHHHH CS
      OTCace 101 vteellklakkdaivlHcLPakrgeEvtdeVfdsprsvvfeqaeNrlhtikAllvl 156
                 v++ell++a + aivlHcLPa+rgeE+tdeV d+p+svvf+qaeNrlh++kA+l +
  KIR61254.1 247 VNAELLAHAAPGAIVLHCLPAHRGEEITDEVLDGPASVVFDQAENRLHAQKAVLTY 302
                 *****************************************************986 PP

>> OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2   0.0   1.3e-45   1.2e-41       1     148 []       3     141 ..       3     141 .. 0.94

  Alignments for each domain:
  == domain 1  score: 142.2 bits;  conditional E-value: 1.3e-45
                 S-BSSGGGS-HHHHHHHHHHHHHHHHHHHTTT-STTTTT.-EEEEEESS--HHHHHHHHHHHHHTTSEEEEEESTTTSCTTTGGSTTSSCHHHHHHHHH CS
    OTCace_N   1 rhllsledlskeeieelldlaaelkekvkkekkekllkg.ktlallFeepStRTrvSfevAakrlGgkvlslseaediqlssvskgrkEsleDtarvls 98 
                 rhll+ +dls++e  ++ldlaa++k+++     ++ l+g +++a+lF ++S+RTr+Sf++++++lGg++l+++  + ++ +     r+E+l+D  rvls
  KIR61254.1   3 RHLLRDDDLSPAEQATVLDLAARMKAERF---AHRPLAGpRSVAVLFDKQSLRTRISFDAGIAELGGHPLVVD-TQVTHFG-----RGETLADAGRVLS 92 
                 8************************9976...67777777*********************************.5456666.....66*********** PP

                 HHTSEEEEEESSHHHHHHHHHHHSSEEEEEEETSSB-HHHHHHHHHHHHH CS
    OTCace_N  99 ryvdaiviRhpgaeeleelakyasvpviNagdgdgeHPtQaLaDlltire 148
                 ryv aiv+R++g +++ e+a+ asvpviNa+ +dg HP+Q LaDllt+re
  KIR61254.1  93 RYVAAIVLRTHGDDRIAEVAAGASVPVINAL-TDGFHPCQLLADLLTVRE 141
                 ***********9999****************.***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2522.95
//
Query:       KIR61255.1  [L=171]
Description: arginine repressor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-24   85.7   0.0    2.1e-24   85.1   0.0    1.3  1  Arg_repressor_C  Arginine repressor, C-terminal domain
    3.3e-22   78.0   0.0    4.8e-22   77.5   0.0    1.3  1  Arg_repressor    Arginine repressor, DNA binding domain
  ------ inclusion threshold ------
       0.12   12.6   0.1       0.27   11.5   0.0    1.6  2  HTH_Tnp_Tc3_2    Transposase


Domain annotation for each model (and alignments):
>> Arg_repressor_C  Arginine repressor, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.0   3.6e-28   2.1e-24       1      66 [.      90     155 ..      90     157 .. 0.95

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 3.6e-28
                      HHHH-SEEEEETTEEEEE-STTHHHHHHHHHHH-..TTEEEEEE-SSEEEEEE-TTS-HHHHHHHH CS
  Arg_repressor_C   1 lrelvvsidsaenlvvikTlpGaAqavAaaiDslelpeilGtiAGdDTilvilrseedaeelaekl 66 
                      lrel+ ++ds++n++v++T+pGaAq++A+a+D+++lpe++GtiAGdDTilv++r++  ++ l ekl
       KIR61255.1  90 LRELLNEVDSSGNIAVLRTPPGAAQYLASALDRAGLPEVVGTIAGDDTILVVAREAVGGAALGEKL 155
                      689999**************************************************9999998887 PP

>> Arg_repressor  Arginine repressor, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0   8.1e-26   4.8e-22       2      68 ..       6      72 ..       5      74 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 8.1e-26
                   SHHHHHHHHHHHHHHS---SHHHHHHHHHTTT----HHHHHHHHHHHT-EEEETTSTSEEEE-B-SS CS
  Arg_repressor  2 kkeerqklikkiikeekissQkelvelLkeeGidvtQatvSRdLkelglvkvraengeyvYvlpaet 68
                   ++++r+++i ++i  + ++sQ el++lL+ +G+ vtQat+SRdLkelg+v  r   g+ vYv+p+++
     KIR61255.1  6 TRAARHARIVELIRDKAVRSQTELADLLAGDGVAVTQATLSRDLKELGAVTARGGDGRPVYVIPEDG 72
                   799*************************************************************997 PP

>> HTH_Tnp_Tc3_2  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.4e-05      0.27       2      43 ..      12      53 ..      11      58 .. 0.93
   2 ?   -3.4   0.0         2   1.2e+04      16      26 ..      90     100 ..      84     107 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.4e-05
  HTH_Tnp_Tc3_2  2 rrIvrlvrkdPritlreLanelkeeGksvsreTirrrLrkag 43
                   +rIv+l+r +  ++ +eLa  l+ +G+ v ++T +r L++ g
     KIR61255.1 12 ARIVELIRDKAVRSQTELADLLAGDGVAVTQATLSRDLKELG 53
                   69********************999*************9876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2
  HTH_Tnp_Tc3_2  16 lreLanelkee 26 
                    lreL ne+ ++
     KIR61255.1  90 LRELLNEVDSS 100
                    46677777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1238.05
//
Query:       KIR61256.1  [L=401]
Description: argininosuccinate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     2e-180  600.2   0.0   2.3e-180  600.0   0.0    1.0  1  Arginosuc_synth  Arginosuccinate synthase
  ------ inclusion threshold ------
      0.022   14.3   0.0      0.033   13.7   0.0    1.2  1  QueC             Queuosine biosynthesis protein QueC
       0.17   10.6   0.1       0.23   10.2   0.1    1.2  1  tRNA_Me_trans    tRNA methyl transferase


Domain annotation for each model (and alignments):
>> Arginosuc_synth  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  600.0   0.0  3.8e-184  2.3e-180       1     387 [.       6     391 ..       6     392 .. 0.99

  Alignments for each domain:
  == domain 1  score: 600.0 bits;  conditional E-value: 3.8e-184
  Arginosuc_synth   1 vLaysGGlDtsviikllkeklgeeviavavdvGqeeedldevkekalklgavksvvvDakeefvedyifpaikanalYedrYllgtalaRPlia 94 
                      vLaysGGlDtsv+i++l+e++g+ev+avavdvGq++e+ld ++++al++gav+s vvDa++ef+ dy++pa++analY+drY+l++al+RPli+
       KIR61256.1   6 VLAYSGGLDTSVAIPYLAEQTGAEVVAVAVDVGQGGENLDVIRQRALDCGAVESEVVDARDEFAADYCLPALRANALYMDRYPLVSALSRPLIV 99 
                      8********************************************************************************************* PP

  Arginosuc_synth  95 kklvevakkegaeavahGctGkGnDqvRfevsirslaPdlkviaPvReleltReeeieyakekgipvevtkkkpysiDenllgrsieagiLedp 188
                      k+lv++a+++g+++v+hGctGkGnDqvRfev++ +laPdlk+iaP+R++++tR+++i++a+ekg+p++v+ k+pys+D+nl+gr++e+g+Led+
       KIR61256.1 100 KHLVAAARRHGGTIVSHGCTGKGNDQVRFEVGLGALAPDLKIIAPARDFAWTRDKAIAFAEEKGLPIDVSAKSPYSVDQNLWGRAVETGFLEDI 193
                      ********************************************************************************************** PP

  Arginosuc_synth 189 knappediyeltkdpakapdepeeveiefekGvPvaldgeelsvlelieklneiagkhGvGRiDivedRlvglksReiYeapaalvLikahkdl 282
                      ++ap ed+y++t+dpa+++ +p+ev + f++GvPva+dge+++++++i +ln++ag++GvGR+D+vedRlvg+ksRe+Yeap+a++Li+ah++l
       KIR61256.1 194 WTAPVEDLYAYTADPAQER-DPDEVVVTFDAGVPVAIDGETVTPYQAILELNRRAGAQGVGRLDMVEDRLVGIKSREVYEAPGAIALITAHQEL 286
                      *****************99.8************************************************************************* PP

  Arginosuc_synth 283 ekltlerevakfkkiveekyaelvYkGlwfsPlkealdafiektqervtGtvrvklfkGsvvvlgReseeslYdeelasydeedefdqkeaeGf 376
                      e++t+er++a+fk+ v+++++elvY+GlwfsPlk+aldafi+++q++v+G+vr+ l+ G+++v+gR+se  lYd+ +a+yd+ d+fdq+ a+Gf
       KIR61256.1 287 EAVTVERDLARFKRGVDQRWGELVYDGLWFSPLKRALDAFIDDAQRQVSGEVRLVLHGGRATVTGRRSEAGLYDFGMATYDTGDTFDQSLAKGF 380
                      ********************************************************************************************** PP

  Arginosuc_synth 377 ikihglqakly 387
                      ++++gl +kl+
       KIR61256.1 381 VQLWGLPSKLA 391
                      *******9975 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.6e-06     0.033       2      61 ..       5      64 ..       4      85 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.6e-06
                EEEE--SSHHHHHHH.HHHHHH-SEEEEEEEESS-TTSHHHHHHHHHHHHT--.-EEEEE- CS
        QueC  2 avvllSGGlDSttvl.alakkegkevealtfdYgqrhkkeleaakkiakelgveehkildl 61
                +v+  SGGlD ++++ +la+++g+ev a+ +d gq   ++l++ ++ a + g +e++++d 
  KIR61256.1  5 VVLAYSGGLDTSVAIpYLAEQTGAEVVAVAVDVGQGG-ENLDVIRQRALDCGAVESEVVDA 64
                67889*****8887647899999***********974.35667777777777778877775 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   3.9e-05      0.23       2      34 ..       4      37 ..       3      64 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 3.9e-05
  tRNA_Me_trans  2 kvvvalSgGVDSsvaaallkeq.gyevigvflkl 34
                   +vv a SgG D sva   l+eq g ev++v + +
     KIR61256.1  4 RVVLAYSGGLDTSVAIPYLAEQtGAEVVAVAVDV 37
                   89*************9777766379999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 3029.40
//
Query:       KIR61257.1  [L=487]
Description: argininosuccinate lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-66  222.5   0.0    1.1e-65  222.1   0.0    1.2  1  Lyase_1   Lyase
    5.1e-21   75.2   0.6    5.1e-21   75.2   0.6    3.2  4  ASL_C2    Argininosuccinate lyase C-terminal


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.1   0.0   1.2e-69   1.1e-65       2     312 .]      25     318 ..      24     318 .. 0.96

  Alignments for each domain:
  == domain 1  score: 222.1 bits;  conditional E-value: 1.2e-69
                 EEEEETCHHHHHHHHHHHHHGGGHHHHHCHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTTHSSG CS
     Lyase_1   2 rftvkadklmgiftersrenfrlseedikalaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellgekve 100
                 rf +  ++  +  + +  ++ rl  +di ++ a ++ +a a+++  ee+  +++ald++ +   ++ +f+ +v++e+ +ta+++ l e +g       +
  KIR61257.1  25 RFAGGPSEALARLSVSVQFDWRLAPYDIAGSRAHARVLAGAGLLDPEELGRMLAALDDLEAACASG-AFRPTVDDEDVHTALERGLLERLG-------S 115
                 555556666777889999*******************************************88888.************************.......9 PP

                 IIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEETT CS
     Lyase_1 101 pndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvellg 199
                   +k+  g+S+nDqv+T+lrl l++     +   l +L++al+e+a  + d+  +G Thlq+A+Pvt+g++l a+++ l rd+erl++  +r+ v++lg
  KIR61257.1 116 LGGKLRAGRSRNDQVATDLRLYLRDHA-RGVAGRLVELAEALVEQAARHVDTAAPGMTHLQHAQPVTFGHWLLAHVQPLLRDLERLRDWDHRTAVSPLG 213
                 9**************************.55********************************************************************* PP

                 TTTTTSSTTTSCCTHHHHHHHHHHHHHCSTEESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTSTTTEBTH CS
     Lyase_1 200 ggtavgtglnadpefaelvakelakvtglpvkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiMPgKvNPv 298
                 +g+++g gl  dp    +v kel+ +     + +ns++av+drD+v+e+l++ +l+ ++Ls+++e++ l  s e+g vel++a  + GSSiMP+K+N +
  KIR61257.1 214 AGALAGSGLPLDPV---AVSKELG-FRT---SFANSMDAVADRDFVAEFLFVTALVGVHLSRLGEEVVLWTSQEFGWVELDDAFAT-GSSIMPQKKNAD 304
                 **************...*******.555...69*****************************************************.************ PP

                 HHHHHHHHHHHHHH CS
     Lyase_1 299 qlElltgvagrvvG 312
                  +El +g++gr vG
  KIR61257.1 305 IAELARGKSGRLVG 318
                 ***********998 PP

>> ASL_C2  Argininosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.24   2.1e+03      44      63 ..      80     106 ..      57     107 .. 0.67
   2 ?   -0.7   0.2      0.27   2.4e+03      23      35 ..     144     156 ..     141     178 .. 0.70
   3 ?   -3.5   0.0         2   1.8e+04      12      29 ..     229     246 ..     229     249 .. 0.70
   4 !   75.2   0.6   5.7e-25   5.1e-21       1      68 [.     381     448 ..     381     449 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.24
                 HHHHHHH-......TT--.GGGGGGSS CS
      ASL_C2  44 leelkeis......plle.edveeaLd 63 
                 l++l++++      p ++ edv++aL+
  KIR61257.1  80 LDDLEAACasgafrPTVDdEDVHTALE 106
                 333332223344448899999999985 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHT CS
      ASL_C2  23 eivgravrlaeek 35 
                  ++gr+v+lae+ 
  KIR61257.1 144 GVAGRLVELAEAL 156
                 5677777776543 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2
                 HHCTS-HHHHHHHHHHHH CS
      ASL_C2  12 vrkGlpFReAHeivgrav 29 
                 v k l FR++   +  av
  KIR61257.1 229 VSKELGFRTSFANSMDAV 246
                 567899999876665555 PP

  == domain 4  score: 75.2 bits;  conditional E-value: 5.7e-25
                 STTHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHTT--GGG--HHHHHHH-TT--GGGGGGSSHHHHT CS
      ASL_C2   1 FstATdlADyLvrkGlpFReAHeivgravrlaeekgkeleeltleelkeisplleedveeaLdpeasV 68 
                 Fs+AT++AD+Lvr+++pFR+AHei+g++v+l+  ++++l+e++ ++l+++s++l++ v+++L++++++
  KIR61257.1 381 FSLATEVADWLVRRNVPFRDAHEITGKLVALCAVRECALDEVSDADLAAVSEHLDPSVRDVLSVRSAL 448
                 9***************************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3376.44
//
Query:       KIR61258.1  [L=118]
Description: hypothetical protein TK50_26370 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-17   62.8   0.0    4.1e-17   62.5   0.0    1.1  1  YjbR      YjbR


Domain annotation for each model (and alignments):
>> YjbR  YjbR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   2.3e-21   4.1e-17       1      85 [.      11     102 ..      11     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 2.3e-21
                 TTSTTEEEEECTTS-EEEECCCEEEEEEECCCCG.EEEES..-HHHHHHHHHSSTT.EEE-TS..TTTEEEEETTS.S-HHHHHHHHHHHHH CS
        YjbR   1 lslpgatedfpfgpelvfkvggKmFallgleees.lnlkc..dpeeaeaLreqypa.iapgyh..kkhWitvlldg.vpddeleelideSYr 85 
                 l +pga  d p++ e v+kvg+K+Fa+lg+++++ + lkc  ++e a++++ ++p   +   h  + +W+++ l g ++ddel e +d+SY+
  KIR61258.1  11 LGKPGAWLDQPWDAEVVVKVGNKIFAFLGPDSDDrVGLKCapTRELADEWLHRFPGdAVASSHvgRFGWNSLRLAGaIDDDELLEAVDTSYE 102
                 679*********6348**************99978*****777899*********977777799766*****99999**************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 920.80
//
Query:       KIR61259.1  [L=152]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1147.69
//
Query:       KIR61260.1  [L=207]
Description: 3-methyladenine DNA glycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-64  215.4   0.0    4.2e-64  215.2   0.0    1.0  1  Pur_DNA_glyco  Methylpurine-DNA glycosylase (MPG)
  ------ inclusion threshold ------
          7    6.5   7.0       0.43   10.3   1.2    2.1  2  Cecropin       Cecropin family


Domain annotation for each model (and alignments):
>> Pur_DNA_glyco  Methylpurine-DNA glycosylase (MPG)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.2   0.0   4.6e-68   4.2e-64       4     174 ..      16     192 ..      13     193 .. 0.96

  Alignments for each domain:
  == domain 1  score: 215.2 bits;  conditional E-value: 4.6e-68
  Pur_DNA_glyco   4 drdalevAkeLLGkvlvreleegkvagrivEtEAYlg.eeDpAshayrgrternavmFgppgtlYvYliygihhclnvvteeegeasaVLiRalev 98 
                    + +++  A+ LLG+ l        v++ri+E+EAY g + DpAsha+rgrt+rnavmFgp+g++YvY++yg+h+c+nvvt++egeasaVL+Ra+ev
     KIR61260.1  16 AGPVVPAARGLLGCRLSAG----GVTVRITEVEAYAGtAGDPASHAHRGRTPRNAVMFGPAGHAYVYFTYGMHWCVNVVTGPEGEASAVLLRAGEV 107
                    5678889**********99....9*************789******************************************************** PP

  Pur_DNA_glyco  99 veglelmrarrg.......lanGPgkLcqaLgidkelngadlleseelvle..keeaeeeeivagpRiGiskaaelpwRfyikgn 174
                    veg+e++r+rr+       la+GP++Lc+aLgid++ +g+ ll +++++l+   e++++++ivagpR+G++ a+++pwRf+++ +
     KIR61260.1 108 VEGVEVARSRRTavrrdadLARGPARLCAALGIDRTTYGRYLLGDGPVRLRpaAERVPDAAIVAGPRVGVTGAHDVPWRFWVDRE 192
                    ***************************************************998899************************9876 PP

>> Cecropin  Cecropin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.5      0.65   5.8e+03      21      25 ..      20      24 ..      16      26 .. 0.55
   2 ?   10.3   1.2   4.8e-05      0.43      12      29 ..     163     180 ..     162     181 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.65
    Cecropin 21 gPavr 25
                +Pa+r
  KIR61260.1 20 VPAAR 24
                46665 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 4.8e-05
    Cecropin  12 rirdAaIkggPavrrvaa 29 
                 r+ dAaI +gP+v + +a
  KIR61260.1 163 RVPDAAIVAGPRVGVTGA 180
                 677**********98777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1632.41
//
Query:       KIR61261.1  [L=361]
Description: glycosyl hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-13   48.0   0.0    0.00019   20.3   0.0    3.7  4  Sortilin-Vps10  Sortilin, neurotensin receptor 3,
    5.2e-12   43.9  16.5       0.55   10.4   0.9    7.6  8  BNR             BNR/Asp-box repeat
    1.3e-07   31.2   0.3     0.0055   16.0   0.0    3.9  3  BNR_2           BNR repeat-like domain
    7.2e-05   22.2   1.0        1.4    8.0   0.0    5.3  7  DUF4185         Domain of unknown function (DUF4185)
    0.00031   20.2   0.1         12    5.0   0.0    4.6  5  BNR_3           BNR repeat-like domain
  ------ inclusion threshold ------
      0.017   15.1   3.3         54    4.3   0.0    4.9  6  BNR_6           BNR-Asp box repeat


Domain annotation for each model (and alignments):
>> Sortilin-Vps10  Sortilin, neurotensin receptor 3,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0032       9.5       3      61 ..      64     132 ..      62     146 .. 0.68
   2 !   15.7   0.0   1.7e-06    0.0051       2      59 ..     117     186 ..     116     198 .. 0.84
   3 !    7.2   0.0   0.00064       1.9      39      64 ..     221     245 ..     200     270 .. 0.60
   4 !   20.3   0.0   6.5e-08   0.00019       2      62 ..     282     348 ..     281     356 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0032
                     EEEESSTTSS-EE-GGGGTTEEBE..........-EEE.-STTS--EEEEEES-EEEEESSTTSSEEEEE CS
  Sortilin-Vps10   3 vyiSeDeGktwkkvkeklkgeaiq..........eivv.hpfdkkkaylltdskklyvttDrGktwkkfk 61 
                     v  S+D G++w++ ++ +                ++++  p + + + + t+ + l+++tD+G+t++ ++
      KIR61261.1  64 VATSDDLGTSWQEPEQAPVAFP-AdtgaslgrvwQLTPaGPAEPDVVWAGTEPSALFRSTDAGRTFELVR 132
                     6678888888888776332211.12334456666555425788888888888999999999999998765 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.7e-06
                     EEEEESSTTSS-EE-GGGGTTEEBE............-EEE-STTS--EEEEEES-EEEEESSTTSSEEE CS
  Sortilin-Vps10   2 evyiSeDeGktwkkvkeklkgeaiq............eivvhpfdkkkaylltdskklyvttDrGktwkk 59 
                      +++S+D+G+t++ v +  ++   +            ++ +hp+d +++ +  +++ +y + D+G++w  
      KIR61261.1 117 ALFRSTDAGRTFELVRALWEHPHREqwgagfggqavhTVLPHPHDPTRIAVAMSTGGVYHSADAGASWAP 186
                     689**********988754444333445888888888*******************************86 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.00064
                     EEEEES-EEEEESSTTSSEEEEE-SS CS
  Sortilin-Vps10  39 ylltdskklyvttDrGktwkkfklpf 64 
                     y+ +++  +y+++D G+tw ++ +  
      KIR61261.1 221 YA-QNHHGVYRSDDGGRTWLSIAAGL 245
                     33.33444555555555555555444 PP

  == domain 4  score: 20.3 bits;  conditional E-value: 6.5e-08
                     EEEEESSTTSS-EE-GGGGTTEEBE......-EEE-STTS--EEEEEES-EEEEESSTTSSEEEEE- CS
  Sortilin-Vps10   2 evyiSeDeGktwkkvkeklkgeaiq......eivvhpfdkkkaylltdskklyvttDrGktwkkfkl 62 
                     +vy+S D+G tw+ +++ l    +       ++  ++ d + +y+ t+s+++y ++D+G++w+ + +
      KIR61261.1 282 RVYRSADAGGTWEALSAGLPAGPYYpavlrdAMCADDADPTGVYFGTRSGEVYASRDEGDSWSLVAA 348
                     69*************987665554467789999*****************************97765 PP

>> BNR  BNR/Asp-box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.52   1.5e+03       2      11 ..      17      26 ..      16      27 .. 0.75
   2 !    7.3   0.2    0.0021       6.2       2      11 ..      66      75 ..      65      76 .. 0.90
   3 ?   -3.0   0.0       5.2   1.5e+04       7      12 .]      93      98 ..      92      98 .. 0.82
   4 !    7.3   0.0     0.002       6.1       1      11 [.     119     129 ..     119     130 .. 0.89
   5 !    6.6   0.0    0.0035        10       1      11 [.     175     185 ..     175     186 .. 0.90
   6 !   10.4   0.9   0.00018      0.55       1      10 [.     229     238 ..     229     238 .. 0.96
   7 !    8.9   0.0   0.00059       1.8       1      11 [.     284     294 ..     284     295 .. 0.91
   8 !    7.8   0.1    0.0013         4       1      12 []     334     345 ..     334     345 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.52
                EESSTTSS-E CS
         BNR  2 yStDgGktWs 11
                +StDg +tW+
  KIR61261.1 17 TSTDGRRTWQ 26
                5888877887 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0021
                EESSTTSS-E CS
         BNR  2 yStDgGktWs 11
                +S+D G +W+
  KIR61261.1 66 TSDDLGTSWQ 75
                6********8 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.2
                TSS-EE CS
         BNR  7 GktWsk 12
                G+ W++
  KIR61261.1 93 GRVWQL 98
                899*85 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.002
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 + StD G+t++
  KIR61261.1 119 FRSTDAGRTFE 129
                 68*******98 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.0035
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 y+S D G +W 
  KIR61261.1 175 YHSADAGASWA 185
                 89********6 PP

  == domain 6  score: 10.4 bits;  conditional E-value: 0.00018
                 EEESSTTSS- CS
         BNR   1 yyStDgGktW 10 
                 y S+DgG+tW
  KIR61261.1 229 YRSDDGGRTW 238
                 89******** PP

  == domain 7  score: 8.9 bits;  conditional E-value: 0.00059
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 y S D G tW+
  KIR61261.1 284 YRSADAGGTWE 294
                 79********8 PP

  == domain 8  score: 7.8 bits;  conditional E-value: 0.0013
                 EEESSTTSS-EE CS
         BNR   1 yyStDgGktWsk 12 
                 y S+D G +Ws+
  KIR61261.1 334 YASRDEGDSWSL 345
                 67********95 PP

>> BNR_2  BNR repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.8e-06    0.0055     135     261 ..      10     140 ..       5     142 .. 0.81
   2 !   11.5   0.1   4.4e-05      0.13      83     202 ..     117     242 ..     104     313 .. 0.68
   3 ?    0.5   0.0       0.1     3e+02      77      95 ..     329     344 ..     321     353 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.8e-06
                 -EEEEEEEESSTTSS-EE----SSSEEEEEEEE.EEETT.EEEEEEEE...EEEEEEESSTTSS-EEE-EEEEE----.......---SEEEEEE..EE CS
       BNR_2 135 kwrallelsddggktWkkgrvveqisgeiqpsilvekdg.slvalaRsrkaaileseSedgGetWskveltslpnpnsgidavtlkdgrlllvyN..he 230
                 + + +l +s+dg +tW+ +++ +  +g   +++ ++ +  +l a + s++    +++S d G +W+++e   +  p      + ++ gr++ ++   + 
  KIR61261.1  10 GKGLFLATSTDGRRTWQLSGPHHPMTGVYAVAVDTRREVpRLLAGMTSSHFGPSVATSDDLGTSWQEPEQAPVAFPAD----TGASLGRVWQLTPagP- 103
                 568899*****************99888888886555547888888887778899**************998888887....4445688999988542. PP

                 --.......SSEEEEEEESTT-GGG----EEEEEEE.. CS
       BNR_2 231 sa.......pRkpLtvalskdngkswkevltLekgpks 261
                  a       + +p ++  s+d+g++++ v  L++ p++
  KIR61261.1 104 -AepdvvwaGTEPSALFRSTDAGRTFELVRALWEHPHR 140
                 .3357788888888899999999999999999998865 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.4e-05
                 -EEEESSTTSS----EHHHGGEEEEEE-SS--..EE--T--EEEEEE.....SS--.EEEEEEEESSTTSS-EE----SSSEEEEEEEE.EEETTEEEE CS
       BNR_2  83 trvtSkDdGktWsaprrlpkspflnisgpvknkpiqladGrlilPsshe...lagk.wrallelsddggktWkkgrvveqisgeiqpsilvekdgslva 177
                 +  +S+D G+t++  r+l ++p     g + +   q  +   +lP  h    +a       ++ s+d g +W  g+    i+    p +++e  ++++ 
  KIR61261.1 117 ALFRSTDAGRTFELVRALWEHPHREQWGAGFG--GQAVH--TVLPHPHDptrIAVAmSTGGVYHSADAGASWAPGNTG--IRAYFLPDEWPEFGQCVHK 209
                 3399************9999965555555555..33333..344544442222222133457889********99997..9999*************** PP

                 EEEE...........EEEEEEESSTTSS-EEE- CS
       BNR_2 178 laRsrka........aileseSedgGetWskve 202
                 +aR+  +        +  + +S dgG+tW    
  KIR61261.1 210 VARDAGDperlyaqnHHGVYRSDDGGRTWLSIA 242
                 ****66677777776677889********8754 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.1
                 HHT----EEEESSTTSS-- CS
       BNR_2  77 wagskitrvtSkDdGktWs 95 
                  +g++   + S+D+G +Ws
  KIR61261.1 329 RSGEV---YASRDEGDSWS 344
                 44444...77888888887 PP

>> DUF4185  Domain of unknown function (DUF4185)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.53   1.6e+03     129     142 ..      15      28 ..      14      41 .. 0.83
   2 ?    0.7   0.0     0.083   2.5e+02     128     144 ..      63      79 ..      50      91 .. 0.78
   3 ?    3.6   0.0     0.011        32     124     162 ..     113     151 ..     105     175 .. 0.78
   4 ?   -1.6   0.0      0.41   1.2e+03     127     141 ..     172     186 ..     161     195 .. 0.81
   5 !    8.0   0.0   0.00048       1.4     117     143 ..     215     242 ..     204     276 .. 0.76
   6 ?   -0.6   0.0       0.2     6e+02     128     142 ..     282     296 ..     278     303 .. 0.86
   7 ?    1.4   0.0     0.052   1.6e+02     122     144 ..     326     348 ..     311     353 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.53
     DUF4185 129 iaksdDngetWekv 142
                 +a+s+D+ +tW+  
  KIR61261.1  15 LATSTDGRRTWQLS 28 
                 689********975 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.083
     DUF4185 128 aiaksdDngetWekvpe 144
                 ++a+sdD g +W++ ++
  KIR61261.1  63 SVATSDDLGTSWQEPEQ 79 
                 78999999999998655 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.011
     DUF4185 124 tnysaiaksdDngetWekvpesvrtnsdtagnenfqqva 162
                 t+ sa+++s+D g+t+e v++  +   + ++   f  +a
  KIR61261.1 113 TEPSALFRSTDAGRTFELVRALWEHPHREQWGAGFGGQA 151
                 66799************9988755555566666665555 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.41
     DUF4185 127 saiaksdDngetWek 141
                 +++++s D g++W+ 
  KIR61261.1 172 GGVYHSADAGASWAP 186
                 57999********76 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.00048
     DUF4185 117 ga.pgewttnysaiaksdDngetWekvp 143
                 g+ +  +  n+ ++++sdD+g+tW + +
  KIR61261.1 215 GDpERLYAQNHHGVYRSDDGGRTWLSIA 242
                 553567899***************7764 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 0.2
     DUF4185 128 aiaksdDngetWekv 142
                 ++++s D g tWe  
  KIR61261.1 282 RVYRSADAGGTWEAL 296
                 789*********976 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.052
     DUF4185 122 wttnysaiaksdDngetWekvpe 144
                 + t  ++++ s D+g +W+ v++
  KIR61261.1 326 FGTRSGEVYASRDEGDSWSLVAA 348
                 55777899**********98876 PP

>> BNR_3  BNR repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.035     1e+02     153     211 ..      16      76 ..       9     103 .. 0.70
   2 ?    0.5   0.0     0.097   2.9e+02     198     210 ..     173     185 ..     165     190 .. 0.86
   3 ?   -0.1   0.0      0.15   4.5e+02     198     211 ..     227     240 ..     222     248 .. 0.81
   4 !    5.0   0.0    0.0042        12     194     210 ..     278     294 ..     276     301 .. 0.88
   5 !    4.7   0.0    0.0051        15     197     216 ..     331     350 ..     326     356 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.035
       BNR_3 153 iyssddtkswklskgmsd.dgCsdpsvvew.edgkLmm.mtacddgrrrVYesgdkGesWte 211
                   s+d+  +w+ls       g+   +v  + e  +L+  mt+   g   V  s d G+sW+e
  KIR61261.1  16 ATSTDGRRTWQLSGPHHPmTGVYAVAVDTRrEVPRLLAgMTSSHFG-PSVATSDDLGTSWQE 76 
                 5677778888888755443777777776662445666536666666.5999*********99 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.097
       BNR_3 198 rVYesgdkGesWt 210
                  VY s d G sW 
  KIR61261.1 173 GVYHSADAGASWA 185
                 59**********6 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.15
       BNR_3 198 rVYesgdkGesWte 211
                  VY+s d G++W  
  KIR61261.1 227 GVYRSDDGGRTWLS 240
                 69**********76 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.0042
       BNR_3 194 dgrrrVYesgdkGesWt 210
                 d r rVY+s d G +W+
  KIR61261.1 278 DERCRVYRSADAGGTWE 294
                 7899************6 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.0051
       BNR_3 197 rrVYesgdkGesWtealgtl 216
                  +VY s d+G+sW      l
  KIR61261.1 331 GEVYASRDEGDSWSLVAAHL 350
                 58***********8665555 PP

>> BNR_6  BNR-Asp box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.22   6.7e+02       3      12 ..      66      75 ..      66      76 .. 0.84
   2 ?    2.3   0.0     0.078   2.3e+02       1      12 [.     118     129 ..     118     131 .. 0.89
   3 ?   -3.4   0.0       5.3   1.6e+04       2      11 ..     175     184 ..     175     184 .. 0.79
   4 ?    3.9   0.1     0.024        71       2      12 ..     229     239 ..     228     241 .. 0.84
   5 ?   -3.2   0.1       4.4   1.3e+04       5       8 ..     247     250 ..     247     250 .. 0.89
   6 ?    4.3   0.0     0.018        54       2      12 ..     284     294 ..     283     296 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.22
       BNR_6  3 rSeDfGknfk 12
                +S+D G ++ 
  KIR61261.1 66 TSDDLGTSWQ 75
                7******994 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.078
       BNR_6   1 LyrSeDfGknfk 12 
                 L+rS D G +f+
  KIR61261.1 118 LFRSTDAGRTFE 129
                 8*****999997 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 5.3
       BNR_6   2 yrSeDfGknf 11 
                 y S D G+++
  KIR61261.1 175 YHSADAGASW 184
                 6688889999 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.024
       BNR_6   2 yrSeDfGknfk 12 
                 yrS+D G ++ 
  KIR61261.1 229 YRSDDGGRTWL 239
                 9****999995 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 4.4
       BNR_6   5 eDfG 8  
                 +DfG
  KIR61261.1 247 SDFG 250
                 7**9 PP

  == domain 6  score: 4.3 bits;  conditional E-value: 0.018
       BNR_6   2 yrSeDfGknfk 12 
                 yrS D G++++
  KIR61261.1 284 YRSADAGGTWE 294
                 9*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2355.87
//
Query:       KIR61262.1  [L=91]
Description: thiamine biosynthesis protein ThiS [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-12   46.7   0.1    4.3e-12   46.5   0.1    1.0  1  ThiS            ThiS family
  ------ inclusion threshold ------
      0.094   12.6   0.0       0.12   12.2   0.0    1.3  1  Phage_NinH      Phage NinH protein
       0.18   11.3   0.4       0.44   10.0   0.4    1.6  1  Sirohm_synth_M  Sirohaem biosynthesis protein central


Domain annotation for each model (and alignments):
>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.1   7.1e-16   4.3e-12       1      77 []       4      91 .]       4      91 .] 0.96

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 7.1e-16
                EEETTCCHHHHT.CEEEEESSTSBHHHHHHHHHHHTCHHG.........TTTTEEEEETTEEEGC.CTTTSB--TTCEEEEEESTTC- CS
        ThiS  1 vllfaelrelag.eeelelaegstvaelleaLgerypela.........lerrvavavNgeivpr.lwldtelkdgDevailppVaGG 77
                vl+++ lr  +g    l +a + t++++l++L+ + p+la          +r v+v+v+ge++++  +ld+++ +g ev +lp VaGG
  KIR61262.1  4 VLVPGPLRGEVGgAARLTVAAAGTLRDVLDELAGEWPRLArrlrdergeVRRHVNVYVDGEDCRHlGGLDAPVPSGAEVQVLPSVAGG 91
                789999999999999999*********************9*********99**************66********************9 PP

>> Phage_NinH  Phage NinH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.1e-05      0.12       7      38 ..      27      58 ..      20      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.1e-05
  Phage_NinH  7 tiPdlLvetyGnqtEvARrlkcsRatvRkYvr 38
                t+ d+L e  G     ARrl+ +R+ vR+ v+
  KIR61262.1 27 TLRDVLDELAGEWPRLARRLRDERGEVRRHVN 58
                88899999999999***************875 PP

>> Sirohm_synth_M  Sirohaem biosynthesis protein central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.4   7.4e-05      0.44      15      24 ..      40      49 ..      39      49 .. 0.97

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 7.4e-05
  Sirohm_synth_M 15 PrLAaliRre 24
                    PrLA+++R+e
      KIR61262.1 40 PRLARRLRDE 49
                    9*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 685.41
//
Query:       KIR61263.1  [L=207]
Description: NADPH-dependent FMN reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-37  128.3   0.1    2.6e-37  127.9   0.1    1.1  1  FMN_red       NADPH-dependent FMN reductase
    3.2e-07   30.2   0.0    5.9e-07   29.4   0.0    1.4  1  Flavodoxin_2  Flavodoxin-like fold
  ------ inclusion threshold ------
      0.063   13.5   0.0        0.5   10.6   0.0    2.0  2  Flavodoxin_5  Flavodoxin domain
       0.11   12.6   0.1       0.25   11.5   0.1    1.6  1  YhzD          YhzD-like protein


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.9   0.1   5.8e-41   2.6e-37       3     154 ..       6     155 ..       4     156 .. 0.93

  Alignments for each domain:
  == domain 1  score: 127.9 bits;  conditional E-value: 5.8e-41
                 EEEEES--STT-HHHHHHHHHHCCT-T.......T-CEEEEETTTS.--....---HCHGHTCGGSHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHH CS
     FMN_red   3 ilvisGSlrkgsntrklaewaaealkea......gaevelidladlilpc..alcdkdlesegqtsddvaellekiaaadaliivtPeYngsysgllKn 93 
                 ++v+s+ l+++s+tr la+++a+a++ +      +ae+  idl+d+ +++  + ++ ++     ++++++++l+++aaad++++vtP++n+sysgl+K+
  KIR61263.1   6 LAVVSAGLSQPSSTRLLADQLAAATRDElarrgvEAELRPIDLRDH-AHDvvNHLLTGF-----PPPALRDALDTLAAADGVVAVTPIFNASYSGLFKS 98 
                 5799*******************998889999988999********.665576666566.....9********************************** PP

                 HHHCHT-.SSCHCCTT-EEEEEEE-SSTTTTHHHHHHHHHHHHHTT-EEEECSEEEETSHH CS
     FMN_red  94 alDrlsrtrgkkelrgKpvalvavgggrrgglraeeqlrqvlaelgaivvpraavavgkae 154
                 ++D+++       l+++pv+++a+gg++r++l++e++ r+++a+l+a+vvp+a++a+ +++
  KIR61263.1  99 FFDLFD----ATTLADRPVLIAATGGTARHSLALEHAVRPMFAYLRAVVVPTAVFAATEDW 155
                 *****8....9**********************************************9988 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.3e-10   5.9e-07       6     179 ..       8     153 ..       3     173 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.3e-10
                   EE--TTGGCCHHHCHHHHHHHHHCCCTT.....TEEEEEEHHCCT-----CCCCHCCHHHHTT.CHHHHHHHHHHHHCSSEEEEEEE-BTTB--HHH CS
  Flavodoxin_2   6 inahprpeksfssalaqafvealekagp.....hevtvrdLyadflpvlttrdlaaklayeek.padveseqiekllaadaivlqfPlwwfgvPail 96 
                   +++    + s+++ la+++++a +++ +     +e + +dL +    v++        +  ++ p+ + +++++ l+aad +v ++P+ + +++ ++
    KIR61263.1   8 VVSAGLSQPSSTRLLADQLAAATRDELArrgveAELRPIDLRDHAHDVVN--------HLLTGfPPPALRDALDTLAAADGVVAVTPIFNASYSGLF 96 
                   44444444699999999999999999876665555666777775333333........444555666777777************************ PP

                   HHHHHHHS-TTTSCEETTCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHHHHHHHHHTT-EEEEEEEEESCT CS
  Flavodoxin_2  97 KgwiDrvltagfafyteeggegrgggLkgkkalvivttGgpeesyqerglegaamdellpplrgilgfiGikdvepvlvegva 179
                   K ++D                 + + L+++++l+++t G   +s         a+++++   r ++ ++ + +v++ ++ +++
    KIR61263.1  97 KSFFDLF---------------DATTLADRPVLIAATGGTARHS--------LALEHAV---RPMFAYLRAVVVPTAVFAATE 153
                   *****94...............34679********999999665........3566666...777888888888887777754 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.14   6.2e+02       9      40 ..      17      52 ..      11      63 .. 0.72
   2 ?   10.6   0.0   0.00011       0.5      39      91 ..      73     126 ..      66     156 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.14
  Flavodoxin_5  9 GqTkkiaeriaeelree....gelvdvedvekesed 40
                   +T+  a+++a+++r+e    g ++++++++  +++
    KIR61263.1 17 SSTRLLADQLAAATRDElarrGVEAELRPIDLRDHA 52
                  578888888888888887777888888887654444 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00011
  Flavodoxin_5  39 edlesydavvigasvyygkllpelakFvekh.reaLstkpvalfsvsltarkpe 91 
                   + l+ +d vv ++++++ + ++ +++F +    ++L+++pv + +++ tar + 
    KIR61263.1  73 DTLAAADGVVAVTPIFNASYSGLFKSFFDLFdATTLADRPVLIAATGGTARHSL 126
                   578999*********************99764899**************99765 PP

>> YhzD  YhzD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.6e-05      0.25      10      51 ..      15      57 ..      14      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.6e-05
        YhzD 10 dksGeklLdetfeAad.DeeAkekGekkLkekgleekthRlvs 51
                ++s++ lL +++ Aa+ De A++  e+ L+  +l ++ h +v+
  KIR61263.1 15 QPSSTRLLADQLAAATrDELARRGVEAELRPIDLRDHAHDVVN 57
                578999**999987653888*******************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1520.38
//
Query:       KIR61264.1  [L=294]
Description: universal stress protein UspA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-52  175.7  11.2    1.3e-26   93.8   0.1    2.0  2  Usp       Universal stress protein family
  ------ inclusion threshold ------
      0.015   15.3   0.5         13    5.8   0.0    3.1  3  FR47      FR47-like protein
       0.11   11.8   0.2       0.18   11.0   0.0    1.4  2  Opi1      Transcription factor Opi1


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.1   2.2e-30   1.3e-26       1     141 []       1     140 [.       1     140 [. 0.83
   2 !   84.0   7.3   2.3e-27   1.4e-23       5     140 ..     152     286 ..     150     287 .. 0.91

  Alignments for each domain:
  == domain 1  score: 93.8 bits;  conditional E-value: 2.2e-30
                 S-SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHH.HHHHHHHHHHCTTCEEEEEEEESSHHHHHHHH CS
         Usp   1 mykrIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeael.eadaakaaaeaggvkvevvveegdpaeeilev 98 
                 m++ ++V+vDgs++s  A+e+A+++a+ r  +l l+h   ++  + v+  + +++  +  +e+++  +++  +++++++ + v v+ ++  ++++ ++v
  KIR61264.1   1 MNRPVVVGVDGSPSSLVAAEHAAQQAAWRSLPLLLVHGYLHPLGYGVPLNPYDMGLPAPTEEARRMlDRT--AEELRGRWPGVAVEAHQVAGGPAATLV 97 
                 89***********************************987766666666666666666555555550444..577777777777777777777777899 PP

                 HHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp  99 aeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                 ae++ a+l+VvGsrg++g+++lllGSv  +v+ h +cpVlvVr
  KIR61264.1  98 AESRRAELVVVGSRGLGGFAGLLLGSVGAQVAGHGHCPVLVVR 140
                 9*****************************************8 PP

  == domain 2  score: 84.0 bits;  conditional E-value: 2.3e-27
                 EEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH.HHHHHHCTTCEEEEEEEESSHHHHHHHHHHHT CS
         Usp   5 IlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleada.akaaaeaggvkvevvveegdpaeeilevaeee 102
                 ++ +vDgse  + A+  A+++a++rg+ l+l+hv ++++  +v+da  e++ ++ +++++ l+a+a + +aa +g  +++  v+  +p ++++e+  + 
  KIR61264.1 152 VVAGVDGSEPGRLAAVLAADEAARRGTGLVLVHVASADDARPVPDAVAESGAAARAESADLLDATAaEVTAAHPGLTVERRPVRAAKPERVLIEL--SG 248
                 899*************************************************************9977777777777777777777777766666..66 PP

                 TSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEE CS
         Usp 103 dadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvV 140
                 da l+V+Gsrgr+g+ +l+lGSvs+++++ha+cpVlv 
  KIR61264.1 249 DAALVVIGSRGRGGFVGLVLGSVSQALVQHAHCPVLVA 286
                 7***********************************96 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0043        26      37      67 ..     115     145 ..     109     146 .. 0.92
   2 ?    5.8   0.0    0.0022        13      20      44 ..     160     184 ..     150     192 .. 0.85
   3 ?    0.7   0.0     0.089   5.3e+02      34      63 ..     259     288 ..     248     293 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0043
                 SHHHHHHHHHHHHHHHS-S-EEEEEETT-HH CS
        FR47  37 GlgsrlvkalakeiaergktvllvvvasNtp 67 
                 G++++l  ++ +++a  g+ ++lvv+++++p
  KIR61264.1 115 GFAGLLLGSVGAQVAGHGHCPVLVVRPEEQP 145
                 99************************98875 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0022
                 TTSSEEEEEE-GGG-SSSHHHHHHH CS
        FR47  20 dggelgalqvlpehrrrGlgsrlvk 44 
                 + g l a+   +e+ rrG g +lv+
  KIR61264.1 160 EPGRLAAVLAADEAARRGTGLVLVH 184
                 5699*******************97 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.089
                 -SSSHHHHHHHHHHHHHHHS-S-EEEEEET CS
        FR47  34 rrrGlgsrlvkalakeiaergktvllvvva 63 
                  r G+ +++  ++++++++  + ++lv+ +
  KIR61264.1 259 GRGGFVGLVLGSVSQALVQHAHCPVLVAHP 288
                 4678999999*********99999988765 PP

>> Opi1  Transcription factor Opi1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     3e-05      0.18     186     223 ..      65     102 ..      48     105 .. 0.82
   2 ?   -3.5   0.1      0.77   4.6e+03     165     180 ..     203     218 ..     183     249 .. 0.44

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3e-05
        Opi1 186 gslregaptaRsrWqavLleatslAGGlgaalseesmk 223
                   l+++a++ R rW  v +ea ++AGG +a+l  es++
  KIR61264.1  65 RMLDRTAEELRGRWPGVAVEAHQVAGGPAATLVAESRR 102
                 4455666667**************************98 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.77
        Opi1 165 aasrstsepvderdat 180
                 aa r +s ++ +  a 
  KIR61264.1 203 AAARAESADLLDATAA 218
                 2222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2026.83
//
Query:       KIR61265.1  [L=293]
Description: universal stress protein UspA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-48  162.7   9.9    1.2e-24   87.4   1.8    2.0  2  Usp        Universal stress protein family
  ------ inclusion threshold ------
      0.014   15.1   0.3      0.034   13.9   0.0    1.7  2  PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   1.3     2e-26   1.8e-22       5     141 .]       9     145 ..       7     145 .. 0.96
   2 !   87.4   1.8   1.4e-28   1.2e-24       5     141 .]     154     290 ..     152     290 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 2e-26
                 EEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHHTT CS
         Usp   5 IlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaeeed 103
                 ++V+vDgs+++ +A++ A ++a+ar+ +l+++h+   +  g+   +++  + ++     ae+  + a a+a++   +v+v+ e  d++++ +++ e++d
  KIR61265.1   9 VVVGVDGSDSALNAVRVATREAEARHRPLRVVHAFIWPLLGTPLGPAPGGPPDAGLRNYAERIVADAVAEAKKVSTEVDVTGELVDGSPVPVLLRESRD 107
                 89****************************************9999999999999999999999988999999999999999999999999******** PP

                 SSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp 104 adliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                 a l+V+Gsrg++g+++ll+GS +  v ++a+cpVlvVr
  KIR61265.1 108 AALLVLGSRGLGGFAELLVGSAAIGVSARADCPVLVVR 145
                 *************************************8 PP

  == domain 2  score: 87.4 bits;  conditional E-value: 1.4e-28
                 EEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHHTT CS
         Usp   5 IlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaeeed 103
                 ++V+vDgs  s++A+ +A+e+a++r+++l+++h++  ++++a ++  + +++  +  ee+e+++++  a + ++ ++v+v+++   + ++ ++v+ ++ 
  KIR61265.1 154 VVVGVDGSALSDEAIGFAFEEAAHRDTDLVVVHAWLFPTPAAPGAVLPLVYDLDALAEEEERVLAESVAGWSQRYPEVTVHRRLVRGTPARVLVEVSRT 252
                 89****************************************************************999999999999999999999999999999*** PP

                 SSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp 104 adliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                 a+l VvG++gr++  +lllGSvs++vl+ha+ p+ +Vr
  KIR61265.1 253 AQLTVVGAHGRGAWGGLLLGSVSHAVLHHADSPLAIVR 290
                 *************************************8 PP

>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.48   4.3e+03      40      52 ..       6      18 ..       3      27 .. 0.76
   2 ?   13.9   0.0   3.8e-06     0.034      37      86 ..     147     199 ..     133     207 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.48
                S-EEEEEE-S-TT CS
   PGM_PMM_I 40 kkkvvvGrDtRvs 52
                +++vvvG D+  s
  KIR61265.1  6 GAPVVVGVDGSDS 18
                6789***998655 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.8e-06
                 C.STS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEE..EB-HHHHHHHH CS
   PGM_PMM_I  37 e.akkkkvvvGrDtRvssrelaealaaglaanGvevillg..llptPavsfai 86 
                 e +++++vvvG D+ + s+e++  +++ +a+ + + ++++  l ptPa+  a+
  KIR61265.1 147 EaRADGPVVVGVDGSALSDEAIGFAFEEAAHRDTDLVVVHawLFPTPAAPGAV 199
                 447899******************************************87665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2123.92
//
Query:       KIR61266.1  [L=158]
Description: regulatory protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-08   33.7   0.0    3.6e-08   33.3   0.0    1.2  1  cNMP_binding  Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0     2e-12   3.6e-08       2      87 ..      31     116 ..      30     118 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 2e-12
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHH CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellq 87 
                   + +++g+ +fr+G+pa+++++v+ Gev++    +    v ++++gpG ++G   l+   +++  +vA+ ++  ++++++ ++++++
    KIR61266.1  31 VVWHPGHRLFRAGQPAERFWLVRGGEVALDFPVPGRGDVGIDTIGPGGVLGWSWLFPPYRWQFGAVAVRRTPAVEFTAAGVRRMME 116
                   6799*************************6555555567999**************76689999**************99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1203.65
//
Query:       KIR61267.1  [L=336]
Description: alcohol dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-32  109.5   2.1    9.8e-32  109.1   0.3    2.0  2  ADH_N            Alcohol dehydrogenase GroES-like domain
    7.7e-28   97.1   1.1    7.7e-28   97.1   1.1    1.5  2  ADH_zinc_N       Zinc-binding dehydrogenase
      3e-10   41.3   1.4    4.8e-10   40.6   1.4    1.3  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
     0.0028   18.3   0.8      0.011   16.4   0.6    2.2  1  CoA_binding      CoA binding domain
  ------ inclusion threshold ------
      0.023   15.4   0.8      0.049   14.3   0.2    1.8  2  Methyltransf_25  Methyltransferase domain
      0.035   14.8   0.8       0.25   12.0   0.8    2.2  1  Methyltransf_11  Methyltransferase domain
       0.17   11.2   4.4       0.28   10.4   4.4    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
       0.18   11.6   0.0        0.4   10.5   0.0    1.5  1  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.3   4.4e-35   9.8e-32       1     108 [.      25     133 ..      25     134 .. 0.96
   2 ?   -0.7   0.1      0.58   1.3e+03      49      62 ..     158     171 ..     148     194 .. 0.81

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 4.4e-35
                 TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSE CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cgeCaaCkegeenlCeeakllgvsldGgfaey 98 
                 pge+l++++a+g+C++D+h ++g++ ++ ++p+++GHE vG+ve +g +v++ +vGdrV++++l   cg+Ca+C +g e+lCe+++ +g+ +dG++aey
  KIR61267.1  25 PGEILVRIEASGLCHTDIHAARGDWPVKPNPPFVPGHEGVGIVERIGAGVTEHAVGDRVALPWLGWaCGTCAYCVTGWETLCESQRNTGYAIDGAHAEY 123
                 689**********************************************************998766******************************** PP

                 EEECGGGEEE CS
       ADH_N  99 vvvpekklvk 108
                  v++++++v 
  KIR61267.1 124 AVASARYAVA 133
                 ****998875 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.58
                 T-CS--TT-EEEE- CS
       ADH_N  49 evkklkvGdrVvve 62 
                 +v +++ GdrV+v 
  KIR61267.1 158 KVAGVRPGDRVAVF 171
                 68889999999985 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       3.4   7.5e+03      65      90 ..     148     173 ..     146     174 .. 0.64
   2 !   97.1   1.1   3.4e-31   7.7e-28       1     127 [.     175     298 ..     175     301 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.4
                 SSCSHHHHHHHHHCEEEEEEEEECSC CS
  ADH_zinc_N  65 cvGsgatleaalkllkpgGrlvvvGg 90 
                 c+G+ +     ++ ++pg r++v+G+
  KIR61267.1 148 CAGVTTYKAVKVAGVRPGDRVAVFGI 173
                 55544444445666888999999986 PP

  == domain 2  score: 97.1 bits;  conditional E-value: 3.4e-31
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE.EE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee.fd 98 
                 g+G++a q+A  +G e++avd+++ekl+la++lGa++++++ + d+ve+i +l    gvdv++  +++++++e+a ++l++gGrlv+v ++k++e+ ++
  KIR61267.1 175 GLGHLAQQYAQLFGGETVAVDVTAEKLALAASLGATHTVDAADVDPVEAITALG---GVDVAIVLAADPRVVEQAHRCLRRGGRLVLVSLPKDNEVtLP 270
                 89***************************************555**********...*********************************6666666** PP

                 HHHHHHTT-EEEEE-SSCHHHHHHHHHHH CS
  ADH_zinc_N  99 lrnlllkeksilGsllgslreefkealdl 127
                 ++  +lk ++++Gs++g+ r +++e+++l
  KIR61267.1 271 VFETVLKGITVIGSIVGT-RADLAEVFRL 298
                 ******************.9999999887 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   1.4   2.2e-13   4.8e-10       1     133 []     207     334 ..     207     334 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 2.2e-13
                   TT-SEEEETT.STTHHHHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfeaatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaal 96 
                   lGA++ +d    + +ea t  +gvDv++ +++ +  +e+++++l+ gGrlv ++ p   +++  p ++   +++++   +    + +ad l+e+++l
    KIR61267.1 207 LGATHTVDAAdVDPVEAITALGGVDVAIVLAADPRVVEQAHRCLRRGGRLVLVSLP-KDNEVTLPVFETVLKGITVIGSI--VGT-RAD-LAEVFRL 298
                   8******999888888888889**********999*********777***988853.34455555554433444433333..344.899.******* PP

                   HHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  97 ieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                    ++G+ ++  + v +l+e++eA++++ +gr+  ++Vl
    KIR61267.1 299 HAAGRTHVAYE-VRKLDEINEAIEDVLAGRVAARLVL 334
                   ****8877776.9******************999997 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.6   4.8e-06     0.011       5      93 ..     167     260 ..     165     263 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.8e-06
                  EEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEET.....TEEEESCHHHHHHHC..T.TTEEEEES-HHHHHHHHHHHHHTT-SEEEEE CS
  CoA_binding   5 kviviGagglgiaglyhfkeklkygikavfgvnprkvgtevl.....glpvyksvdeleekt..e.vdvavitvPaesaqeavdelveagikgivii 93 
                  +v+v G+gglg+ ++ + ++  + g +++++v+ +k++   +     ++ +  +vd +e+ t  + vdva++++  +++ e + ++++ g +++++ 
   KIR61267.1 167 RVAVFGIGGLGH-LAQQYAQLFG-GETVAVDVTAEKLALAASlgathTVDAA-DVDPVEAITalGgVDVAIVLAADPRVVEQAHRCLRRGGRLVLVS 260
                  79********44.5566666666.667889*****99977777788888888.9998888887746************************9999975 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.9   1.3e+04      21      39 ..     110     128 ..      90     142 .. 0.49
   2 ?   14.3   0.2   2.2e-05     0.049       7      97 .]     175     254 ..     171     254 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.9
                      SSEEEEEESSHHHHHHHHH CS
  Methyltransf_25  21 kakvtgvDiseemleaare 39 
                      + + +++D +++  + a +
       KIR61267.1 110 RNTGYAIDGAHAEYAVASA 128
                      3334445544444444444 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.2e-05
                      TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25   7 GtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      G G+l+++ a+ +g ++ ++vD+++e l+ a++  + +   v+    d  +   + g +D+ ++  a      +d ++++++++r+L+ gG
       KIR61267.1 175 GLGHLAQQYAQLFG-GETVAVDVTAEKLALAASLGATH--TVDAADVDPVEAITALGGVDVAIVL-A------AD-PRVVEQAHRCLRRGG 254
                      7799*********8.****************9999432..4444444443334577899999884.2......23.5799*********99 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8   0.00011      0.25       6      96 .]     175     258 ..     170     258 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                      TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11   6 GtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLkpgGllvi 96 
                      G G la+++a+ + +++v+vD+++e l+la + + +          da ++ p+e   + +     v   ++   +++++++R+L+ gG+lv+
       KIR61267.1 175 GLGHLAQQYAQLFgGETVAVDVTAEKLALAASLGATHT-------VDAADVdPVEA--ITALGGVDVAIVLAADPRVVEQAHRCLRRGGRLVL 258
                      58999999997778*************99988888765.......34444323333..333333334444478899**************985 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.4   0.00013      0.28      19      95 ..     155     233 ..     141     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
                  TTCEETCB---.EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTC.ECEEHCHHHHHHHHHHHH-SEE CS
  AlaDh_PNT_C  19 laGgvpgvepa.kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgak.fvevlksqeellaeavkeadvv 95 
                   a +v gv+p+ +v v+G G  G  A + a+ +g +++++Dv +++l    slga+ +v++   +  +   a+  +dv 
   KIR61267.1 155 KAVKVAGVRPGdRVAVFGIGGLGHLAQQYAQLFGGETVAVDVTAEKLALAASLGAThTVDAADVDPVEAITALGGVDVA 233
                  577999**999679**************************************888613444555555555555555555 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00018       0.4      13     112 ..     175     261 ..     174     286 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00018
  Methyltransf_31  13 GtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeiervlkpggi 106
                      G G+l+ + a++  +++e v +D ++e + lA +  + + +d     + ++e++  l     +D+ +       la+ + + e+++r l+ gg+
       KIR61267.1 175 GLGHLAQQYAQL--FGGETVAVDVTAEKLALAASLGATHTVD--AADVDPVEAITAL---GGVDVAIV------LAADPRVVEQAHRCLRRGGR 255
                      679999999955..4689****************99999999..5555555555543...78999777......78899999************ PP

  Methyltransf_31 107 lliedp 112
                      l++ + 
       KIR61267.1 256 LVLVSL 261
                      998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2389.59
//
Query:       KIR61268.1  [L=886]
Description: pyruvate phosphate dikinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-81  271.5   0.0    1.1e-80  270.9   0.0    1.2  1  PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
    8.7e-53  179.7   0.0    3.9e-29  102.0   0.0    3.2  3  PPDK_N           Pyruvate phosphate dikinase, PEP/pyruvate bi
    3.9e-25   87.4   1.4    8.2e-25   86.3   1.4    1.6  1  PEP-utilizers    PEP-utilising enzyme, mobile domain


Domain annotation for each model (and alignments):
>> PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.9   0.0   1.8e-84   1.1e-80      10     291 ..     529     873 ..     522     876 .. 0.93

  Alignments for each domain:
  == domain 1  score: 270.9 bits;  conditional E-value: 1.8e-84
                      CCCCHCCCXBCEEEEEESSCHHHHHHHHCTXSSEEEEEHHHHCTTSCCHHHHHH...................HHHHHHHHHHHTTTSEEEEEX CS
  PEP-utilizers_C  10 llavtkdgkkikvlaNidtpedaekalengaeGiGLlRtEflfmareelpteee...................qaeaykkvleamngrpvvvRt 84 
                      ll  ++ ++++ v aN+dtp da++a+++ga GiGL+RtE++f+   +   e+                    q++++ ++l+am+g+pv++R+
       KIR61268.1 529 LLGHADAVRRLGVRANADTPADARRARAFGAGGIGLCRTEHMFLGERRELVERLiladgpaerdaalaallplQRADFVGILAAMDGLPVTIRL 622
                      556678899***********************************99776666667899************************************ PP

                      XXSSCCGGSGGC..........................HHHH.XSXGGGSSXTHHHHCCSHHHHHHHHHHHHHHCCCC.......EEEEEESSX CS
  PEP-utilizers_C  85 lDiggdkelpel..........................keepeevNPmlGfRgirlglsepelfetqlrAllrasaag.......kleimlPmv 145
                      +D++ +++lp l                          ++  +e+NPmlG+Rg+rlgl  p lf +q+rA+ +a+a+        + eim+P+v
       KIR61268.1 623 IDPPLHEFLPPLheltarvaraealgedpgrdgallvaVRRMHEANPMLGLRGVRLGLVVPGLFAMQVRAVAEAAAQRrrdggdpRPEIMVPLV 716
                      **************************************99999*********************************777889999********* PP

                      XSHHHHHHHHHHHHHHHHHHHHCTCTXXTTXEEEEEEXSHHHHHTHHHHCTTSSEEEEXHHHHHHHHHTXXCCCHC....HHHH......SXTT CS
  PEP-utilizers_C 146 asveeleeakkiieevkeelekegvkkkkkvkvGiMiEvpsaalladklakevdFfSiGtNDLtQytlavdRdnee....vakl......ydpl 229
                        v+el+  +  +e+v +     gv+ ++++ +G+MiEvp+aal+a ++a e+ FfS+GtNDLtQ + a +Rd+ e     a+l        p+
       KIR61268.1 717 GDVRELTAVRVEAEQVLA-----GVEGAPEIPIGTMIEVPRAALTAGEIAAEARFFSFGTNDLTQTAWAFSRDDVEgaffGAYLergifpVSPF 805
                      ********9999999944.....56777************************************************666544448899999*** PP

                      TCHHCCCHHHHHHHHHHCC......XEEEEESCCCCSCCCHHHHHHCTXSEEEEXGGGHHHHHHHHHC CS
  PEP-utilizers_C 230 epavlrlikevikaaeekg......lkvgiCGelagdpsavellvglGldelSmsaasvpaaraalaq 291
                      e  + ++++++++ a ++g      l+vg+CGe++gdp +ve+++++Gld++S+s++++p+ar a+ +
       KIR61268.1 806 ESIDTAGVGRLVRLAVAEGraarpeLTVGVCGEHGGDPDSVEFFAEVGLDYVSCSPYRIPIARLAAGR 873
                      ***************************************************************98865 PP

>> PPDK_N  Pyruvate phosphate dikinase, PEP/pyruvate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   9.3e-14   5.6e-10       2      40 ..      17      54 ..      16      56 .. 0.94
   2 !  102.0   0.0   6.5e-33   3.9e-29      79     216 ..      62     282 ..      56     284 .. 0.98
   3 !   35.2   0.0   1.4e-12   8.2e-09     270     323 ..     297     348 ..     281     353 .. 0.87

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 9.3e-14
      PPDK_N  2 elvGGKganLaellneagipvPpgfaitadafrefleen 40
                +l+GGKganLae+ +++g+pvPpgf+i++ a+r +l+++
  KIR61268.1 17 DLLGGKGANLAEM-TRLGLPVPPGFTISTAACRAYLAQG 54
                689**********.77*******************9986 PP

  == domain 2  score: 102.0 bits;  conditional E-value: 6.5e-33
      PPDK_N  79 eeleeaikeayeelgkkfgde..elpvaVRSSataEDlpkasfaGqqdtyLnvggeeevle...................................... 137
                 +e++++++e++++lg+ +gd   +l++aVRS+       + s++G+++t+L +g +++++                                       
  KIR61268.1  62 DEVNAHLREVEARLGRWLGDRhdPLLLAVRSG------GRFSMPGMMETILDIGLNDATVGglaahsgderfawdsyrrliqmfgrtvhgvpaeefere 154
                 799****************99999********......9************************************************************ PP

      PPDK_N 138 ...............................................aikavfaSlfnerAilYrkekgldheevalavvvqkmvnsdlg...asGVaf 186
                                                                ai+ vf+S++ +rA+lYr++++++ +++++av+v++mv+++lg    +GVaf
  KIR61268.1 155 laavraaagpggpgaaalrdlvetykkvyahhvghdfpqspheqlylAIRSVFESWNADRAVLYRRREHIP-DDLGTAVNVMAMVFGNLGpdsGTGVAF 252
                 ***********************************************************************.*************************** PP

      PPDK_N 187 sldpetG...fkdevlinasyGlGeaVVaGrvt 216
                 ++dp+tG     + +l +a   +Ge+VVaG+++
  KIR61268.1 253 TRDPATGapgVYGDYLPDA---QGEDVVAGIRN 282
                 *******998999999999...********986 PP

  == domain 3  score: 35.2 bits;  conditional E-value: 1.4e-12
      PPDK_N 270 veeLaeiakkiekhygtpmdiEfaideeegklyllQaRpetrtsekkekkaaet 323
                  ++L ei +++e+hy++  d+Ef+i+   gkl++lQ+R ++rt +++  +aa+ 
  KIR61268.1 297 FRRLTEIMRTLERHYRDLCDVEFTIE--RGKLWMLQTRVGKRTPAAAFVIAAQL 348
                 5789**********************..***************99887776665 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   1.4   1.4e-28   8.2e-25       3      73 .]     411     493 ..     409     493 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 1.4e-28
                    -S-EEEEES---HHHHTTS-GEEEEEES--TTHHHHHHHHHHTT--EEE--SSHH.............HH--TEEEEEETTTT CS
  PEP-utilizers   3 eegvILvaeetspsdiagldkaaGivterGGmtSHaAivArelgiPaVvgvgeati............elkegdlitvDgstG 73 
                    +e+vILv++et+p+d++g+ +a+G++t+rGG+tSHaA+vAr++g  +V+g+++++i            +++ gd+i++DgstG
     KIR61268.1 411 TEPVILVRRETNPDDLPGMIAAQGVLTSRGGKTSHAAVVARGMGRTCVCGAEAVRIdpergeftvgdrVVRAGDVISIDGSTG 493
                    578****************************************************************999999*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (886 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 5690.30
//
Query:       KIR61269.1  [L=209]
Description: hypothetical protein TK50_26465 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00028   20.7   5.8    0.00035   20.4   5.8    1.1  1  Imp-YgjV  Bacterial inner membrane protein


Domain annotation for each model (and alignments):
>> Imp-YgjV  Bacterial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   5.8     2e-08   0.00035      89     156 ..       2      69 ..       1      72 [. 0.96

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2e-08
    Imp-YgjV  89 glisllpiaasllatialfslngikmRllflvssllWlvynilvgsigglllevlflisnlitiyRlr 156
                 ++++l+ +++s+l  + l++ + +++R l lv++l+ + yn ++  +  + l+v+++++n++ + ++ 
  KIR61269.1   2 NWLDLIGWTGSALLVWSLLQARILRLRALNLVGCLVLIGYNTALAVWPMVGLNVVLAVINVWYLRKML 69 
                 79*************************************************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1408.79
//
Query:       KIR61270.1  [L=445]
Description: hemolysin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-42  144.0   1.6    5.5e-42  143.5   1.6    1.1  1  DUF21      Cyclin M transmembrane N-terminal domain
    2.9e-15   56.1   0.0    2.9e-15   56.1   0.0    2.2  3  CorC_HlyC  Transporter associated domain
    2.1e-14   53.7   2.1    1.7e-08   34.8   0.2    2.5  2  CBS        CBS domain
     0.0091   16.0   3.6      0.019   14.9   3.6    1.5  1  Colicin_V  Colicin V production protein
  ------ inclusion threshold ------
       0.19   11.3   1.2        1.4    8.5   0.2    2.3  2  Saf_2TM    SAVED-fused 2TM effector domain


Domain annotation for each model (and alignments):
>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.5   1.6   1.5e-45   5.5e-42       5     164 ..      13     186 ..       9     191 .. 0.96

  Alignments for each domain:
  == domain 1  score: 143.5 bits;  conditional E-value: 1.5e-45
       DUF21   5 lllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellae.........galavviatvivt 94 
                 +l++l+a+f+g+E+Alvsl++++++ l ++g ++ + l +l k+p+r+L+t++ig+tl+ +l+sa a++ +++ l +         +++a+v++t+++t
  KIR61270.1  13 VLVVLNAIFAGSEMALVSLRDSQVQRLERSG-RAGRVLARLAKDPNRFLATIQIGITLAGFLASAAAAVSLAKPLVPllgvfgsaaETAAIVLVTLVLT 110
                 688***************************9.69999*********************************9999999********9999999999999* PP

       DUF21  95 llilvfgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil......esesepavseeelkklve 164
                 +++lvfgE++Pk++a++ ae++al++a+pl +l  l++P+vw l++ ++l++       +++ + + ++el+ +v+
  KIR61270.1 111 FVTLVFGELAPKRIAMQAAERWALLVARPLDLLASLTRPAVWALGATSDLVVrlvgldPKHEPDEIGPDELRDIVA 186
                 *********************************************************9889999999****99985 PP

>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       2.6   9.4e+03      34      41 ..      68      75 ..      65      78 .. 0.85
   2 ?   -2.2   0.1       1.2   4.3e+03      10      26 ..     313     329 ..     308     337 .. 0.76
   3 !   56.1   0.0     8e-19   2.9e-15       3      80 ..     344     422 ..     342     423 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.6
                BHHHHHHH CS
   CorC_HlyC 34 TlgGllle 41
                Tl+G+l +
  KIR61270.1 68 TLAGFLAS 75
                9****986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.2
                 EETT-BHHHHHHHHTST CS
   CorC_HlyC  10 vdGslpldeleeelgle 26 
                 vdG ++l+++ ee+  e
  KIR61270.1 313 VDGIVTLEDILEEIVGE 329
                 89999999988876555 PP

  == domain 3  score: 56.1 bits;  conditional E-value: 8e-19
                 ECTTEEEEETT-BHHHHHHHHTSTTHHC...T-SBHHHHHHHHH-S---.TT-EEEEEETTEEEEEEEEETTCEEEEEEEE- CS
   CorC_HlyC   3 ldegsylvdGslpldeleeelglelpee...dyeTlgGlllellgriPk.egesvevdleglrftVlemdgrrIkkvrvekl 80 
                 +++g +l+ G+ p+++l + +g+elp     dy+T++Gl+l+llg+iP+ +ge v++d  g+ ++V ++d+r I+ vr++++
  KIR61270.1 344 EADGAMLLPGTFPVHDLVD-VGVELPGRpagDYTTVAGLVLTLLGHIPTvPGEDVTID--GWALEVADIDQRAITAVRLRRV 422
                 6899***************.9***99955789*****************99**88888..*******************986 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   7.2e-07    0.0026       9      53 ..     220     266 ..     210     270 .. 0.76
   2 !   34.8   0.2   4.7e-12   1.7e-08       5      56 ..     276     327 ..     273     328 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 7.2e-07
                 CEEEETTSBHHHHHHHHHHHTSSEEEEE..ETTT..BEEEEEEHHHHHH CS
         CBS   9 vvtvppdttleealelmrekgvsrlPVV..dedg..klvGivtlrDllr 53 
                 v+t++  tt e a   ++ +g+sr PVV     g    vG+++lrDl+ 
  KIR61270.1 220 VFTLDSGTTAEAARLVLAATGHSRAPVVrhG--GldDAVGVIHLRDLVG 266
                 567777777777776798999*******441..2434**********85 PP

  == domain 2  score: 34.8 bits;  conditional E-value: 4.7e-12
                 SBSSCEEEETTSBHHHHHHHHHHHTSS.EEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS   5 mtrdvvtvppdttleealelmrekgvs.rlPVVdedgklvGivtlrDllrall 56 
                 + r+++ +p + ++ +al++++ ++ + +l VVde g + Givtl+D+l+ ++
  KIR61270.1 276 CARPPMLLPDSLPVVDALRQFKAERQHiAL-VVDERGAVDGIVTLEDILEEIV 327
                 5688888888899********766664255.******************9986 PP

>> Colicin_V  Colicin V production protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   3.6   5.3e-06     0.019      25      75 ..      66     116 ..      62     131 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.3e-06
   Colicin_V  25 vlsllgwvvafvvasllypslaellaelilspalaaiiaflllfllvlliv 75 
                  ++l+g+++++++a+ l+++l++ll+ + + + +aai+   l++++v l++
  KIR61270.1  66 GITLAGFLASAAAAVSLAKPLVPLLGVFGSAAETAAIVLVTLVLTFVTLVF 116
                 589************************988888888888855555554443 PP

>> Saf_2TM  SAVED-fused 2TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2   0.00038       1.4      18      82 ..      53     117 ..      36     129 .. 0.89
   2 ?    1.1   0.1     0.072   2.6e+02      88     148 ..     290     352 ..     286     354 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00038
     Saf_2TM  18 krsaelllftigvalllailgtdwalkialklaggslevsfssseipeivlaiilvigvllivvG 82 
                  + ++++l ti + + la++ ++ a +++l  +   l   f+s+   ++++++ lv++++++v+G
  KIR61270.1  53 AKDPNRFLATIQIGITLAGFLASAAAAVSLAKPLVPLLGVFGSAAETAAIVLVTLVLTFVTLVFG 117
                 6788999**************************99**********88899999999****99999 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.072
     Saf_2TM  88 lryvneakrqskkkvivIEgrgLrd...tsgsplesavpkeikgrrvdllldlrqrrDGvvveP 148
                 ++++++ k + +   +v++ rg +d   t  + le+ v++ i ++ ++ ++ +r ++DG+++ P
  KIR61270.1 290 VDALRQFKAERQHIALVVDERGAVDgivTLEDILEEIVGE-IYDETDRDVRAVRTEADGAMLLP 352
                 5778888999999999999999998665778889999998.88888888999999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2916.15
//
Query:       KIR61271.1  [L=129]
Description: hypothetical protein TK50_26475 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.015   15.3   0.0      0.024   14.7   0.0    1.4  1  PRC       PRC-barrel domain


Domain annotation for each model (and alignments):
>> PRC  PRC-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.3e-06     0.024       5      31 ..       2      28 ..       1      47 [. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.3e-06
                CS---TT-EEEETTSSEEEEEEEEEEE CS
         PRC  5 rasdliGkeVytedGeklGkVkDvvid 31
                ra +l G++ y+  G++lG+V Dvv+ 
  KIR61271.1  2 RAGELLGRTAYDLHGRRLGRVVDVVVR 28
                7789********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 924.82
//
Query:       KIR61272.1  [L=126]
Description: hypothetical protein TK50_26480 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-05   23.2   0.9    0.00012   22.1   0.9    1.7  1  PRC       PRC-barrel domain
     0.0043   17.3   1.1       0.81   10.0   0.7    2.2  2  DUF2171   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> PRC  PRC-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.9   1.3e-08   0.00012       4      47 ..       4      47 ..       1      94 [. 0.87

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.3e-08
                CCS---TT-EEEETTSSEEEEEEEEEEETTTTEEEEEEEEETTT CS
         PRC  4 frasdliGkeVytedGeklGkVkDvvidekegrvralvvsvggf 47
                   ++l +++++++dG+ +GkV Dv +  ++  v+++     g+
  KIR61272.1  4 QLGRQLLDRQIVDRDGRLVGKVDDVEFGVDADGVLYVAALLTGQ 47
                567899************************99999998877766 PP

>> DUF2171  Uncharacterized protein conserved in bacteria (DUF2171)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.7     9e-05      0.81       6      22 ..      13      29 ..      10      36 .. 0.90
   2 !    5.6   0.0    0.0022        19      39      60 ..      77      97 ..      63     101 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9e-05
     DUF2171  6 eVvgsdGehvGtVDhve 22
                ++v+ dG  vG+VD ve
  KIR61272.1 13 QIVDRDGRLVGKVDDVE 29
                89*************97 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0022
     DUF2171 39 hhyiplswVasvdddkVhLskt 60
                ++ ip   V++vd  +V+L + 
  KIR61272.1 77 PLRIPYRLVERVD-SAVRLRAC 97
                678**********.****9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1021.56
//
Query:       KIR61273.1  [L=408]
Description: Natural resistance-associated macrophage protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-48  163.1  29.0    8.6e-48  163.1  29.0    1.5  2  Nramp     Natural resistance-associated macrophage protein


Domain annotation for each model (and alignments):
>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.1  29.0   4.8e-52   8.6e-48       3     357 ..      26     376 ..      24     377 .. 0.96
   2 ?   -3.4   1.2       0.2   3.6e+03      20      41 ..     386     405 ..     379     407 .. 0.44

  Alignments for each domain:
  == domain 1  score: 163.1 bits;  conditional E-value: 4.8e-52
       Nramp   3 tdlqaGaqfGykLlwvlllstllaillqelsarLGlvTgkglaelirerlpkkvsillwilaelaiiatdlaeviGaAialnllfgipllvgvlitavl 101
                 +++qaGa+fG++  wvlll ++   ++ e++ r + v+g+ + +l+rerl+++v++l +++  l++++t +ae+ G+A+al+l +g++ l++v+++a+ 
  KIR61273.1  26 AASQAGARFGMAHAWVLLLGVVGICAYAEMAGRVAAVSGRAVFDLVRERLGPRVALLNLVASYLVTVLTLAAELGGVALALQLASGLSYLLWVPVAAAA 124
                 689************************************************************************************************ PP

       Nramp 102 vllllflekggyrklEaliialvlvialsFiaelflvkpdwgevlkglvvPslpg...keslllavgilGatvmphnlflhsslvqerkitidrsekee 197
                 v+l+l+  +  ++ +E+++ +  l++ + F++ lf+++ dw+++ +++v     g     + ++av+++  tv+p+ +f+ ss  +e+++++    ++ 
  KIR61273.1 125 VWLVLW--RMRFQLMERVFGLAGLAL-VGFAVALFWLPTDWAALGRSAVHGGAAGqgwGAYWFVAVALFASTVSPYEVFFFSSGAVEERWSA----AD- 215
                 ******..**********98888888.**********************88888889999****************9888888777777676....78. PP

       Nramp 198 alkyeriDtiialivaflinlailivaAavlysggkdvesledaaeaLepllGskaasvlFaigLlaaGlsStitgtlagqyvmegflglrislwlrrl 296
                  l  +r  ++i+  v+++ +l+++++aA v+++gg++ +sl+++a+     +G +a  ++ a++ +a  + +++   l+++y+ ++++g+++ +w ++ 
  KIR61273.1 216 -LADARSSVLIGFPVGGFLALSLIATAAVVYHPGGTSPDSLAQVAQPAVLAFG-AAGLAVAALAFFAVTFGAALETGLSAAYAAAQYFGWQWGKWVSP- 311
                 .**********************************************999***.699****************************************9. PP

       Nramp 297 itralafvpalivilligaele.....lvkllvlsqvllslllPfaliplllltsskklMGefkns 357
                   +a +f  +l+v +l+g+ +      +v+l+ ++ vl +++lP++ +p+l+++++++ +G+ +n+
  KIR61273.1 312 -REAARFHSVLLVSVLLGMLVLlttvdPVTLTEYMLVLSAVVLPLTYLPILIVANDRTYLGDRVNG 376
                 .999********999999999899999**********************************99986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.2
       Nramp  20 llstllaillqelsarLGlvTg 41 
                 +l  l+ ++    ++ L++vTg
  KIR61273.1 386 FL--LVIVVASVAAVPLAVVTG 405
                 22..223333344455556655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3171.11
//
Query:       KIR61274.1  [L=129]
Description: thioesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-16   59.3   0.5      5e-16   58.8   0.5    1.3  1  4HBT      Thioesterase superfamily
    1.4e-07   31.7   0.0    1.8e-07   31.3   0.0    1.1  1  DUF4442   Domain of unknown function (DUF4442)
    5.4e-07   30.1   0.9    6.1e-07   29.9   0.9    1.1  1  4HBT_3    Thioesterase-like superfamily
  ------ inclusion threshold ------
       0.13   11.5   0.1       0.18   11.1   0.1    1.1  1  Thi4      Thi4 family


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.5   1.1e-19     5e-16       1      78 [.      40     116 ..      40     117 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 1.1e-19
                 TSSB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCEE CS
        4HBT   1 gGvvhgGvylallDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrlv 78 
                 +G+ hgGvy a +++aa++  + + g++ +vv+v+ + dflr+vr g elt+ +++++ gr+ + ++ve+ d+ grlv
  KIR61274.1  40 FGIQHGGVYCAVVETAASVGGSLWLGGQGRVVGVSNQTDFLRAVREG-ELTAVGTPVHRGRSQQLWQVEISDDAGRLV 116
                 6999*******************************************.*************************99986 PP

>> DUF4442  Domain of unknown function (DUF4442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0     4e-11   1.8e-07      15     130 ..      10     123 ..       5     124 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 4e-11
                 GGGGG--EEEEEETTEEEEEE---GGGB-TTSSB-HHHHHHHHHHHHHHHHHHHS-TTEEEEEEEEEEEE-S-.--S-EEEEEE-TTS-TT--EEEEEE CS
     DUF4442  15 YfgtvgprieelepgraevrlkkrrrvrNhigtvHAiAicnlaElamGllaeatlpdthrwipkgmevdYlak.atgdltavaelepedvgekeelvve 112
                 +++ +g+ ++e++++r+++r + r++++  +g +H++  c+++E+a+++     l+ + r++  + + d+l+   +g+ltav +     +g + +   +
  KIR61274.1  10 FVALLGLEFDEVSADRVVIRWRVRPDLHQPFGIQHGGVYCAVVETAASVGGSLWLGGQGRVVGVSNQTDFLRAvREGELTAVGTPV--HRG-RSQQLWQ 105
                 56667899***************************************************************99689***9987655..455.3456679 PP

                 EEEEETTE.EEEEEEEEE CS
     DUF4442 113 vevrdekgeevvraeitl 130
                 ve++d++g+ v+r++++l
  KIR61274.1 106 VEISDDAGRLVSRGQVRL 123
                 99***********99876 PP

>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.9   1.4e-10   6.1e-07       2      86 ..      33     126 ..      32     129 .] 0.86

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.4e-10
                 -GGGECTTC..-HHHHHHHHHHHHHHT........-S.SS..EEEEEEE-S---SEEEEEEEEEEE--SS-EEEEEEEEET.TEEEEEEEEEEE-- CS
      4HBT_3   2 rppwtpggag.yGGyvlAlalraaqrtv.......pdprl..hslhvyFlrpgdagpviyhvervrdGrsfstrtvelsqg.grpiftatasfgra 86 
                 rp+ +++ ++ +GG+  A++  aa            +  +   s + +Flr++ +g+++   ++v +Grs ++++ve+s + gr + ++++ ++++
  KIR61274.1  33 RPDLHQPFGIqHGGVYCAVVETAASVGGslwlggqGR--VvgVSNQTDFLRAVREGELTAVGTPVHRGRSQQLWQVEISDDaGRLVSRGQVRLQNL 126
                 89999999988*************9442457886433..3478************************************988***99999988875 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   3.9e-05      0.18      41      63 ..      46      68 ..      36      85 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.9e-05
                TS-EEEEESSSS--TTTTTTSTT CS
        Thi4 41 dlkvailersvspGGGawlGGql 63
                ++  a++e   s+GG  wlGGq 
  KIR61274.1 46 GVYCAVVETAASVGGSLWLGGQG 68
                67789****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1053.48
//
Query:       KIR61275.1  [L=339]
Description: HAD family hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-23   82.6   0.0    6.2e-23   80.8   0.0    1.9  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase
    1.6e-18   66.5   0.2    5.8e-18   64.7   0.1    2.1  2  Hydrolase_like  HAD-hyrolase-like
    9.8e-11   41.8  12.4    9.8e-11   41.8  12.4    2.9  2  GNAT_like       GCN5-related N-acetyltransferase like domain
    3.6e-10   40.5   2.3    2.2e-09   37.9   2.3    2.3  1  Hydrolase       haloacid dehalogenase-like hydrolase
    1.5e-05   25.2   0.1     0.0023   18.1   0.0    2.9  3  HAD_2           Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   1.7e-26   6.2e-23       1     100 [.      16     116 ..      16     117 .. 0.98
   2 ?   -1.6   0.0      0.83     3e+03       9      29 ..     164     184 ..     157     223 .. 0.72

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 1.7e-26
                  EEEESTTTSEETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHHHHTT----GGGEEEHHHHHHHHHHHH.SXXXEEEEESXHHHHHHHHH CS
  Hydrolase_6   1 flfDidGvLwrgdkaipgaaealnalraagkpvvllTNnsskseeeyakkleklgvditeeqvvtsataaaeylkkr.kadkkvlvigeeglreelke 97 
                  ++fD+dGv++  d++ipga+ea+ +l+a+g  v++ TNn+s+  +e+a+ l+ +gv++++e+v+tsa a ae+l++r  a++ vlv+g+e+lr+e+ +
   KIR61275.1  16 VVFDLDGVIYLIDRPIPGAVEAVGRLHAEGRAVAYATNNASRRASEVADLLTGMGVPAAAEEVLTSAGASAELLAERlPAGSPVLVVGAEALRAEITA 113
                  69**************************************************************************9899*****************9 PP

                  TTX CS
  Hydrolase_6  98 agf 100
                  ag+
   KIR61275.1 114 AGL 116
                  997 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.83
                  SEETTEE-TTHHHHHHHHHHT CS
  Hydrolase_6   9 Lwrgdkaipgaaealnalraa 29 
                  L  g+ ++pg   ++ +lr a
   KIR61275.1 164 LPSGRGPLPGNGSLVAVLRTA 184
                  556777788877777777765 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.8   9.9e+03      38      51 ..     148     161 ..     146     166 .. 0.77
   2 !   64.7   0.1   1.6e-21   5.8e-18       2      72 ..     193     263 ..     192     266 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.8
                     HHHCT-EEEEESSS CS
  Hydrolase_like  38 AnnaGwksvLVltG 51 
                     A +aG++ +++ t 
      KIR61275.1 148 AVRAGAQWIATNTD 161
                     78999999988876 PP

  == domain 2  score: 64.7 bits;  conditional E-value: 1.6e-21
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHH..HHHHHT---SEE CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedlee..pehkptyvaddl 72 
                     +gKPep ++  a+++ g   +++l++GDrl+tDi+gA++aG++s+LVltGv++  +l +  ++ +ptyv  dl
      KIR61275.1 193 VGKPEPALFATAARRAGQ--GRTLVVGDRLDTDIEGARRAGLDSLLVLTGVSDVPELLAapAARRPTYVSVDL 263
                     6**************877..9*******************************998887754447****97776 PP

>> GNAT_like  GCN5-related N-acetyltransferase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.7       1.4   5.1e+03      35      49 ..     139     152 ..     136     163 .. 0.63
   2 !   41.8  12.4   2.7e-14   9.8e-11       2      62 .]     282     337 ..     281     337 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.4
   GNAT_like  35 Waaagdgrplrvdag 49 
                 Wa + + + l+v+ag
  KIR61275.1 139 WA-DLAEASLAVRAG 152
                 65.445555577777 PP

  == domain 2  score: 41.8 bits;  conditional E-value: 2.7e-14
   GNAT_like   2 ggWrvevdggaltvsgtgagdpldglRAlaaAvWaaagdgrplrvdagDdaArkaLarlgL 62 
                 ggW+v++++g l+++g+  g pld+l Al+a++W+ +g+g+  rv+a+ + A++aLa+lgL
  KIR61275.1 282 GGWSVRATDGGLELAGA--GRPLDALAALCAVAWT-TGTGA--RVRAAAPEAEAALAALGL 337
                 8****************..9***************.55554..5999999**********9 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   2.3   6.3e-13   2.2e-09       2     210 .]      14     231 ..      13     231 .. 0.71

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 6.3e-13
                 SEEEEESBTTTBCHH...HHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH.ETTTE.....................HHHHTHHH CS
                 xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.....................xxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttge...psvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfat.figrg.....................ayaigkpe 75 
                  +vvfD+dG+++      p  ++++ ++             h  g+a++ a ++ s   +++a  ++g g                     ++  g+p 
  KIR61275.1  14 SLVVFDLDGVIYLIDrpiPGAVEAVGRL-------------HAEGRAVAYATNNASRRASEVADlLTGMGvpaaaeevltsagasaellaeRLPAGSPV 99 
                 589*********8886777777777777.............4444444333333322222222212222233333333332233355555588888888 PP

                 HHHHHHCHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT....GGGESEEEEHHCES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx RF
   Hydrolase  76 wltaldippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG....ddyfdaviasdiet 170
                 ++      + l+a+i++a  +  + + +    +av+    p   + ++aea  + + ag   +++t+ +++ +       G       +   +++   +
  KIR61275.1 100 LVVGA---EALRAEITAAGLRPVSRVDE--SPVAVVQGYGPQVGWADLAEASLAVR-AGA-QWIATNTDRTLPSGRGPLPGngslVAVLRTALDR---E 188
                 88888...99999999999999999999..***********999999998888877.788.9********9999777777864532222333333...3 PP

                 ....STTTSHHHHHHHHHHHTSTGGGEEEEESSHH.HHHHHHHTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
   Hydrolase 171 ....vakpspegkvaaireLqgkpeevamVGDgvn.DaaalaaAg 210
                     v+kp+p  +  a+r+ + ++ ++++VGD++  D++++++Ag
  KIR61275.1 189 pdvvVGKPEPALFATAARRAG-QG-RTLVVGDRLDtDIEGARRAG 231
                 3558****************5.54.5*****************98 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.5     0.097   3.5e+02       1      10 [.      16      25 ..      16      29 .. 0.90
   2 ?    1.8   0.0     0.063   2.2e+02      80     111 ..      30      61 ..      26      80 .. 0.88
   3 !   18.1   0.0   6.3e-07    0.0023     131     178 .]     191     237 ..     187     237 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.097
       HAD_2  1 iiFDlDgTll 10
                ++FDlDg+++
  KIR61275.1 16 VVFDLDGVIY 25
                79******96 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.063
       HAD_2  80 pydgvkelLeeLkeagyklgivTsksreavee 111
                 p++g+ e++  L+++g  ++ +T++ ++ + e
  KIR61275.1  30 PIPGAVEAVGRLHAEGRAVAYATNNASRRASE 61 
                 89**********************97776655 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 6.3e-07
       HAD_2 131 vekkKPdpeviekaleklklkkeeviyvGDsp.tDieaakkagikviav 178
                 v   KP+p+++++a ++ +  + ++++vGD   tDie+a++ag++++ v
  KIR61275.1 191 VVVGKPEPALFATAARRAG--QGRTLVVGDRLdTDIEGARRAGLDSLLV 237
                 5567999999999888766..7889*******************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2453.21
//
Query:       KIR61276.1  [L=112]
Description: sterol-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-10   40.3   0.3    3.9e-10   40.1   0.3    1.1  1  SCP2          SCP-2 sterol transfer family
    1.8e-07   31.5   0.2    2.1e-07   31.3   0.2    1.0  1  Alkyl_sulf_C  Alkyl sulfatase C-terminal


Domain annotation for each model (and alignments):
>> SCP2  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.3   4.4e-14   3.9e-10       5     100 ..      15     112 .]       9     112 .] 0.84

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 4.4e-14
                 HHHHHHHHHHHHHCCH-E..EEEEEECTC.TEEEEEETTSTEEESSCTT.BS-SEEEEEEHHHHHHHHCTSS-HHHHHHTTSSEEEC-HHHHHHHHHHH CS
        SCP2   5 lerlkdpekkealkklag..vlrfdltdlkgsltldlkegqldvaakde.gkadvtlslsledllelaegklnpqkafmqgkLkieGDielaqkleall 100
                  +rl+  ++++  +++    +l+  +tdl+++++ +l++g+l  + +++  ka+  ls s++dll+l++g+l+ +ka+ +++++i+ + + ++kl +ll
  KIR61276.1  15 AARLD-RNADAVRERVDLdrTLACRVTDLDTAFHGRLTDGRLLDLTDGDdPKAKIALSTSSDDLLALVRGQLDVTKAIASRRVSIKANPFDLMKLRKLL 112
                 45543.45555555555566*******************98877555555*********************************************9997 PP

>> Alkyl_sulf_C  Alkyl sulfatase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.2   2.3e-11   2.1e-07      15     114 ..       9     112 .]       5     112 .] 0.91

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 2.3e-11
                   HHHHHHHHHB-HHHHT.....T-EEEEEEEETTTTEEEEEEEETTEEEE.ECT---TTSSEEEEE-HHHHHHHHTTSS-HHHHHHTTTEEEEE-TCH CS
  Alkyl_sulf_C  15 qlfDylAirvdgpkaa.....dkdltinlvvtDvdekyllrlsngvLthtrkaaqaddadltvtltreqLvalllgkatlgkevaagklkieGdaea 106
                   q ++ lA r+d ++ a     d d t+  +vtD d+ ++ rl +g L    ++ ++++a++ ++++ ++L+al+ g+   +k++a+ +++i+ ++  
    KIR61276.1   9 QALQDLAARLDRNADAvrervDLDRTLACRVTDLDTAFHGRLTDGRLLD-LTDGDDPKAKIALSTSSDDLLALVRGQLDVTKAIASRRVSIKANPFD 104
                   5566788899988776788889999************************.999999***************************************99 PP

                   HHHHHCTB CS
  Alkyl_sulf_C 107 lakllsll 114
                   l kl +ll
    KIR61276.1 105 LMKLRKLL 112
                   99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 841.23
//
Query:       KIR61277.1  [L=185]
Description: hypothetical protein TK50_26535 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-05   22.9   1.0    6.7e-05   22.9   1.0    1.6  2  Phasin           Poly(hydroxyalcanoate) granule associated pr
    0.00024   21.2  15.6    0.00024   21.2  15.6    1.7  2  HC2              Histone H1-like nucleoprotein HC2
    0.00049   19.3   0.5     0.0023   17.1   0.2    1.9  2  PHA_synth_III_E  Poly(R)-hydroxyalkanoic acid synthase subuni
     0.0094   15.8   0.2      0.015   15.1   0.2    1.3  1  Pox_A_type_inc   Viral A-type inclusion protein repeat
  ------ inclusion threshold ------
      0.051   13.3   0.1       0.14   11.9   0.0    1.7  2  3-PAP            Myotubularin-associated protein
        0.1   13.0   0.3        0.1   13.0   0.3    1.9  2  HalX             HalX domain


Domain annotation for each model (and alignments):
>> Phasin  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   1.0   2.2e-08   6.7e-05      50     124 ..      22      99 ..      13     101 .. 0.79
   2 ?   -2.9   0.2       2.2   6.6e+03      71      77 ..     145     151 ..     133     165 .. 0.43

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.2e-08
      Phasin  50 ktkkvaeekleevr...esvkskveevkekaeeqwdklekafdervakaLsrlgvpsredveaLsarvdeLtkelekl 124
                 k+++v+   + + +   +++++ +ee+ +  +++ + l k++   v +aL  +g++++++v++L +rv eL+++l+++
  KIR61277.1  22 KAQDVVRRVVGSGEataTQLQALAEELVSTGAANREALTKLVRFEVDRALGAVGLATADEVAELTRRVHELERQLREA 99 
                 444444444433223336778888898899999999**************************************9986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.2
      Phasin  71 eevkeka 77 
                 + v +ka
  KIR61277.1 145 KAVAKKA 151
                 2222222 PP

>> HC2  Histone H1-like nucleoprotein HC2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.1   3.3e+03      66      66 ..      38      38 ..      17      67 .. 0.43
   2 !   21.2  15.6   8.2e-08   0.00024      83     134 ..     119     178 ..      92     184 .. 0.48

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.1
         HC2 66 a 66
                a
  KIR61277.1 38 A 38
                1 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 8.2e-08
         HC2  83 k...........kvakKavAKKaaakKvvakkvvakKtvakkaaaakKpaakkav.akkaaarK 134
                 k           +vakKavAKKa+akK+vakk+ a       +a     aa  a  akka+arK
  KIR61277.1 119 KspgaepsgspaPVAKKAVAKKAVAKKAVAKKAPATVSRTESEAG----AAEPARpAKKAPARK 178
                 222222333333444444444444444444444443333333333....333333357777776 PP

>> PHA_synth_III_E  Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.087   2.6e+02      29      76 ..       4      50 ..       1      64 [. 0.69
   2 !   17.1   0.2   7.7e-07    0.0023     276     313 ..      62      99 ..      51     100 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.087
  PHA_synth_III_E 29 pWkealqwWqavspkeasdaakelmermveqqkayfrlleqfakafad 76
                     +W+  l   ++++++   ++a++++ r+v++++a    l+ +a+++ +
       KIR61277.1  4 AWRAYLGLAMGLTEA-PRKKAQDVVRRVVGSGEATATQLQALAEELVS 50
                     466666666677777.78888889999999988888888888887644 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 7.7e-07
  PHA_synth_III_E 276 emqrlveevlealnlPtRsEldtlhkriqelrrevrrl 313
                        + +v+  l+a++l t  E+ +l +r++el+r++r++
       KIR61277.1  62 LVRFEVDRALGAVGLATADEVAELTRRVHELERQLREA 99 
                      556689*****************************987 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   4.9e-06     0.015       2      21 ..      81     100 ..      80     102 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.9e-06
  Pox_A_type_inc   2 EmsrlRsRIsDLErqLseCr 21 
                     E+ +l +R+ +LErqL e+r
      KIR61277.1  81 EVAELTRRVHELERQLREAR 100
                     888999************99 PP

>> 3-PAP  Myotubularin-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.1   3.2e+03     104     116 ..      36      48 ..      29      52 .. 0.75
   2 ?   11.9   0.0   4.5e-05      0.14     103     131 ..      76     104 ..      65     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
       3-PAP 104 taahklseLadev 116
                 ++a++l++La+e+
  KIR61277.1  36 ATATQLQALAEEL 48 
                 6788999999986 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.5e-05
       3-PAP 103 vtaahklseLadeveaLqraLrqkrssls 131
                  ++a ++ eL+++v++L+r+Lr+ r ++ 
  KIR61277.1  76 LATADEVAELTRRVHELERQLREARTGPA 104
                 478899*****************998875 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.4   4.1e+03      43      52 ..      40      49 ..      35      60 .. 0.51
   2 ?   13.0   0.3   3.4e-05       0.1      31      56 ..      76     101 ..      73     107 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.4
        HalX 43 rleelraqld 52
                +l++l ++l 
  KIR61277.1 40 QLQALAEELV 49
                3333333333 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 3.4e-05
        HalX  31 LadseeYqeLearleelraqldetld 56 
                 La  +e +eL++r+ el++ql e  +
  KIR61277.1  76 LATADEVAELTRRVHELERQLREART 101
                 7889*****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1110  (0.0619109); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1383.25
//
Query:       KIR61278.1  [L=82]
Description: hypothetical protein TK50_26540 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 604.28
//
Query:       KIR61279.1  [L=286]
Description: cytochrome C peroxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-18   66.5   0.0    3.7e-18   66.3   0.0    1.1  1  FtsJ             FtsJ-like methyltransferase
    3.2e-07   29.9   0.1      8e-07   28.7   0.1    1.7  1  S4               S4 domain
  ------ inclusion threshold ------
      0.039   14.7   0.1       0.13   13.0   0.1    1.9  2  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   6.1e-22   3.7e-18       1     176 [.      63     248 ..      63     249 .. 0.90

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 6.1e-22
                 CCCCHHHHHHHHHHHHT..-S-.TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS....HHH..TTEEEE.CS-CCCSSHHHHHCHCHHHSSEE CS
        FtsJ   1 yrsRsayKLleidekfk..lfk.pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm....apl..pgvtti.qgditdpetiekikealserkvd 89 
                 y+sR+++KL+ ++++f    ++  g++++D ga++Gg+++vll+   a + vvavD++ +    a++  ++v+++ ++++++ + +  i       +vd
  KIR61279.1  63 YVSRGGHKLAGALAAFTpdGLRvAGRRCLDAGASTGGFTDVLLRA-DA-AEVVAVDVGYGqlawALRtdDRVRVFeRTNVRTLTPEA-IG-----GEVD 153
                 99**************755344599********************.66.9**********776645567899999999999997776.44.....36** PP

                 EEEE--S-SS-CHHHHHHHHH........CCCCHHHHCCHCCCCECCCEEEECCCHCCCHHHHHHH.HHCCEEEEEEEE-SS--CCG-EEEEEEEE CS
        FtsJ  90 lvvsDgapdvsgvhdldeylq........sqLllaalelalkllkpggtfvlkifrgeeteallkq.lkkfFekvsvvkPkssrsesseeflvcrg 176
                 l v+D++ ++s++ +l+++ +        + ++++++e++ + ++ gg++   ++r e++ ++ ++  + +     v+ ++  +++++ ef+v+++
  KIR61279.1 154 LTVADLS-FISLRLVLPALAActradgdlALMVKPQFEVGRERVGAGGVVRDPALRAEAVLDVSAAaAQLGLGLAGVTASPLPGPSGNVEFFVWLR 248
                 *******.********************8799************************9999988888799************************976 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   1.3e-10     8e-07       2      46 ..       6      50 ..       5      52 .. 0.95

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1.3e-10
                EHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTC CS
          S4  2 RLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgD 46
                RLd  l+r gla sr +A  l+e+GrV++ G ++++++  V+p D
  KIR61279.1  6 RLDAELVRRGLARSREQAAALVEAGRVQLRGVPARKAAALVDPAD 50
                9***********************************999999877 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.1   6.3e+03      22      40 ..      52      70 ..      36      78 .. 0.71
   2 ?   13.0   0.1   2.1e-05      0.13       2      70 ..      91     157 ..      90     179 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.1
                     SEEEEEESSHHHHHHHHHH CS
  Methyltransf_25 22 akvtgvDiseemleaarer 40
                       vtg D+++e++ +  ++
       KIR61279.1 52 LLVTGADPTSEYVSRGGHK 70
                     5689999999998876655 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.1e-05
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEE.EEESBCCGBS..SSTTTEEEEEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnve.fvqgdaedlp..fedgsfDlvvs 70 
                      Ld+G+ tG +t  l+++  +a+v++vD+  ++l+ a +  +    +v+ f++ ++++l      g++Dl v+
       KIR61279.1  91 LDAGASTGGFTDVLLRA-DAAEVVAVDVGYGQLAWALRTDD----RVRvFERTNVRTLTpeAIGGEVDLTVA 157
                      9**************99.69*************99988774....344256777777652234567777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2176.21
//
Query:       KIR61280.1  [L=585]
Description: DNA recombination protein RecN [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-12   46.1   0.0    5.6e-12   45.6   0.0    1.2  1  SMC_N     RecF/RecN/SMC N terminal domain
    1.3e-07   32.4   0.0    1.7e-07   32.0   0.0    1.3  1  AAA_23    AAA domain
     0.0042   16.9   0.0        1.1    9.0   0.0    2.3  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
     0.0098   16.2   0.0       0.14   12.4   0.1    2.6  2  AAA_22    AAA domain
  ------ inclusion threshold ------
       0.15   11.8   0.2       0.27   11.0   0.2    1.4  1  AAA_29    P-loop containing region of AAA domain
       0.56   10.1   1.8       0.88    9.4   0.7    1.8  2  FTA4      Kinetochore complex Fta4 of Sim4 subunit, or CENP-5


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   1.9e-15   5.6e-12       2     215 ..       2     534 ..       1     539 [. 0.95

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 1.9e-15
                 EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT..TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGer.sakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsi 99 
                 l++l+i++   +  + ++lp++ ++++i+G+ G+GK+ ++  +  ++G r +a  +r++  ++++  + +      a v+  +++ + + + ++ ++ +
  KIR61280.1   2 LEELRITGLGVI--EDTTLPLAGGMNVITGETGAGKTMVVTGLGLLFGGRaDAGRVRAQPGRAVVEGRLRLGGRVAAAVHARVTDAGGE-PDDDGSLLL 97 
                 778888888888..68999****************************98746779***********97777778888899988888888.999999*** PP

                 EEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT............................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................................... RF
       SMC_N 100 srrvkrkgeseykingkevtkkevsellesagiske............................................................... 135
                 sr+v  +g+s+ ++ g+ +  + + e+ e++                                                                    
  KIR61280.1  98 SRTVTVEGRSRAHLGGRGMPVAMLGEVGEQVVAVHGqsdqlrllrpaeqraaldrfagpeheklldalreayarwravvddladrrrnararhqeadll 196
                 ****************999887776665554433335779*********************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  KIR61280.1 197 rlgldeisrvdpqpgeddelraeaqrlehaeglrtaaqtahqcvaggteptdetpdatallglarrtleaqagtdpalgdlaarleeaatlvadvsael 295
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  KIR61280.1 296 stylaaldadparlqvvyerraalraltrkyaddvdgvvawaerartrlsdldtsddvldeldreaarlagevaelagrvsasrqeaasrfaeqvtvel 394
                 *************************************************************************************************** PP

                 ............................................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HH CS
                 ............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 ............................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDek 174
                                                                               SgGe + v+la+ +        p  ++De+da    +
  KIR61280.1 395 aglampharievavlprpagrsepslavngvevgvgpdggdevelrllahpgapslplqrGASGGELSRVMLAIEVVFAGSGGPPTLVFDEVDAGVGGQ 493
                 ***********************************************************999***********999999999***************** PP

                 HHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 175 nvkkvaellkeksknaQfivislreemlekadklvgvtkve 215
                    ++ ++l +   + Q++v+++  ++ + ad+ + v k +
  KIR61280.1 494 AAVEIGRRLARLARSHQVLVVTHLPQVAAFADRHLVVAKDT 534
                 *******************************9999888755 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   5.6e-11   1.7e-07       2      85 ..       5      88 ..       4     227 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 5.6e-11
      AAA_23  2 LkienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgr 85
                L+i +++ ++d+++ +  g+++ItG++GaGKT ++  + l ++g++   + + + g    + ++  +g v+a v+ ++++ +g+
  KIR61280.1  5 LRITGLGVIEDTTLPLAGGMNVITGETGAGKTMVVTGLGLLFGGRADAGRVRAQPGRAVVEGRLRLGGRVAAAVHARVTDAGGE 88
                99******************************************9855554444344444444555667777777777777764 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0     0.004        12       1      24 [.      24      47 ..      24      66 .. 0.86
   2 !    9.0   0.0   0.00037       1.1     257     300 ..     477     519 ..     461     522 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.004
      AAA_21  1 lnvliGpNgsGKSnLLdaldllar 24
                +nv++G  g+GK+ +   l ll++
  KIR61280.1 24 MNVITGETGAGKTMVVTGLGLLFG 47
                69**************99999975 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00037
      AAA_21 257 kgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpl 300
                  +++l++DE+++g   ++  ++ + l +l+r   Qv+++TH p 
  KIR61280.1 477 GPPTLVFDEVDAGVGGQAAVEIGRRLARLAR-SHQVLVVTHLPQ 519
                 349********************99988888.8********886 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   4.6e-05      0.14       6      29 ..      23      46 ..      21      98 .. 0.83
   2 ?   -0.1   0.0      0.35     1e+03      72     118 ..     458     505 ..     435     517 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.6e-05
      AAA_22  6 gilvvtGesGtGKTtllrrlleql 29
                g+ v+tGe+G+GKT+++  l   +
  KIR61280.1 23 GMNVITGETGAGKTMVVTGLGLLF 46
                6779************98776665 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.35
      AAA_22  72 rlsseellealeqalraravielliiDEaqh.lrs.eealeeLrsllnl 118
                 ++++++++ a+e  +   + ++ l+ DE++  +   ++a+e  r+l+ l
  KIR61280.1 458 GGELSRVMLAIEVVFAGSGGPPTLVFDEVDAgV-GgQAAVEIGRRLARL 505
                 466777777777777777778999*****9977.424444444555553 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   9.1e-05      0.27       9      39 ..      10      39 ..       2      52 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.1e-05
      AAA_29  9 WgtfdghtieidlkgatlltGpsGsGKSTll 39
                 g ++++t+++   g+ ++tG++G+GK+ ++
  KIR61280.1 10 LGVIEDTTLPLA-GGMNVITGETGAGKTMVV 39
                566777888887.559***********9776 PP

>> FTA4  Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.7   0.00029      0.88     118     175 ..     158     214 ..     151     293 .. 0.82
   2 ?   -2.1   0.0      0.99     3e+03     136     160 ..     302     326 ..     280     374 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00029
        FTA4 118 eeepleallerYaelrarLielserrqqlqarlarlrklkallepflgsedpqesvqe 175
                 +e+ l+al+e Ya+ ra   +l++rr++++ar ++   l+  l++++ + dpq   ++
  KIR61280.1 158 HEKLLDALREAYARWRAVVDDLADRRRNARARHQEADLLRLGLDEISRV-DPQPGEDD 214
                 5677899************************************999664.33333333 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.99
        FTA4 136 Lielserrqqlqarlarlrklkall 160
                 L +  +r+q +++r a lr l ++ 
  KIR61280.1 302 LDADPARLQVVYERRAALRALTRKY 326
                 4444567777777777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.49
# Mc/sec: 3572.83
//
Query:       KIR61281.1  [L=312]
Description: channel-forming protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-86  290.4  16.4    2.4e-86  290.2  16.4    1.0  1  MctB          Copper transport outer membrane protein, MctB
  ------ inclusion threshold ------
      0.035   14.2   0.9      0.061   13.4   0.9    1.3  1  bZIP_1        bZIP transcription factor
      0.043   13.7   1.4        1.2    9.0   0.4    2.6  2  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
      0.046   12.9   0.2      0.072   12.3   0.2    1.2  1  HAP1_N        HAP1 N-terminal conserved region
       0.11   12.6   0.7       0.19   11.8   0.7    1.4  1  bZIP_2        Basic region leucine zipper
       0.56   10.4   2.7        1.2    9.3   0.5    2.4  2  DUF4148       Domain of unknown function (DUF4148)


Domain annotation for each model (and alignments):
>> MctB  Copper transport outer membrane protein, MctB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.2  16.4   7.9e-90   2.4e-86       1     306 []       1     308 [.       1     308 [. 0.98

  Alignments for each domain:
  == domain 1  score: 290.2 bits;  conditional E-value: 7.9e-90
        MctB   1 MIdfRyhlvSlvAvfLALavGivlGsgvlsdnlldtlegqveelreekeelraeadaleaqleaaddfaaavaprlvagrLtgrsVavvttpdadeedv 99 
                 MI+fRyh+vSl+AvfLALa+G+v+G+ +l+++++d+l+++v+ l+++++++r+ ++++++++e +++faa++a+ ++ g+Ltgr+V+++t+p+ + e+ 
  KIR61281.1   1 MINFRYHVVSLTAVFLALAIGLVVGTAALNGPVADSLKERVNGLSKDNQQMRQAVNNMQKEIELEEQFAAEIAQVVLPGKLTGRRVLLLTLPSGR-EHT 98 
                 *******************************************************************************************9887.99* PP

        MctB 100 davtelleqAGAtvtgtvtltdkfvdpdeadklrslaaq.vlp..gaqlspeaadpgekagallgaallt...aeeeasseeraavlaaLreaglvtve 192
                 ++v ++l+  GA+vtg+v+l+dkf++pd++++l +la + ++p   a+ +p +++  e+ +all+++ll+   ++  a++++r avla++++ag++t++
  KIR61281.1  99 EGVLKMLQLGGAQVTGRVDLQDKFINPDNNNNLMELAVTaARPsaPASGLPGNGHGVETSSALLASVLLDradGASPATEADRRAVLASYSNAGYLTTD 197
                 ************************************99977789999999*********************998899********************** PP

        MctB 193 detvapadavvvvteaegstsedaekaaailarlaaaldergagvVlaGragaaaeggliavvradealaaavSTVDnvdtaaGrvatvlAlaeqlagk 291
                 ++ + pa+avv+v+ ++++ ++d++k++++++++a+++d++ga +V+aG  + +a+g+++avvr d+ l++++STVD+++t +G+++t lAl +ql +k
  KIR61281.1 198 EKVTGPAEAVVLVS-GQPYVDKDSAKKDESVVKVAEQFDRTGA-IVVAG--NGSAGGNVVAVVRGDPVLSQTISTVDDANTTQGQLVTTLALVQQLVEK 292
                 **************.999*************************.*****..888899***************************************999 PP

        MctB 292 .aGaYGtgegakallp 306
                  aG+YG+g++a+allp
  KIR61281.1 293 kAGQYGVGDNASALLP 308
                 8************998 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9     2e-05     0.061      29      59 ..      35      64 ..      33      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 29 eeLerrvkaLekeNksLkseleelkkevekL 59
                + L++rv  L+k N+++++ +++++ke+e L
  KIR61281.1 35 DSLKERVNGLSKDNQQMRQAVNNMQKEIE-L 64
                579************************98.4 PP

>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.03        91      47      86 ..      48      90 ..      22      94 .. 0.79
   2 ?    9.0   0.4    0.0004       1.2      58      98 ..     228     268 ..     161     278 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.03
  TP_methylase 47 el...eleapmgkekepleeayeeiaealaealragkdVvllv 86
                  ++   +++ +m ke e +e+  +eia+ +     +g++V+ll+
    KIR61281.1 48 NQqmrQAVNNMQKEIELEEQFAAEIAQVVLPGKLTGRRVLLLT 90
                  225677889999999999999******************9998 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0004
  TP_methylase  58 kepleeayeeiaealaealragkdVvllvsGDPlvygtgse 98 
                   ++++e+  +  a  +a    ag +Vv +v GDP +++t s 
    KIR61281.1 228 VKVAEQFDRTGAIVVAGNGSAGGNVVAVVRGDPVLSQTIST 268
                   4444444444444447778899**************99876 PP

>> HAP1_N  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   2.4e-05     0.072     163     199 ..      32      67 ..      26      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.4e-05
      HAP1_N 163 vqldlLqeklreLeeeNekLreeasqLktetdtlEek 199
                 +  d L+e+++ L ++N+++r+  +++ ++ ++lEe+
  KIR61281.1  32 PVADSLKERVNGLSKDNQQMRQAVNNM-QKEIELEEQ 67 
                 5679***********************.444667776 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7   6.3e-05      0.19      28      54 .]      35      61 ..      33      61 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.3e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 28 eeleervkeLeeeNaqLrqkveqLeke 54
                 +l+erv+ L+++N+q rq v +++ke
  KIR61281.1 35 DSLKERVNGLSKDNQQMRQAVNNMQKE 61
                589*********************998 PP

>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.35     1e+03       7      22 ..      15      34 ..       7      56 .. 0.54
   2 ?    9.3   0.5   0.00041       1.2      21      50 ..     158     198 ..     132     203 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.35
     DUF4148  7 aaalaa.avaaaaala...a 22
                ++ala+ +v+ +aal    a
  KIR61281.1 15 FLALAIgLVVGTAALNgpvA 34
                22222224444444436551 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00041
     DUF4148  21 a...........ahskspkTRAqVraELaqaeaaGylpsgd 50 
                 +           a+ +sp T A+ ra La + +aGyl++++
  KIR61281.1 158 SsallasvlldrADGASPATEADRRAVLASYSNAGYLTTDE 198
                 04444455559**************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1178  (0.0657036); expected 358.6 (0.02)
Passed bias filter:                      907  (0.0505884); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 2169.35
//
Query:       KIR61282.1  [L=565]
Description: virulence factor MviN [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-44  152.5  22.9      2e-44  151.9  22.9    1.2  1  MurJ      Lipid II flippase MurJ
    1.2e-06   28.3  11.6    1.2e-06   28.3  11.6    3.7  3  MatE      MatE


Domain annotation for each model (and alignments):
>> MurJ  Lipid II flippase MurJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.9  22.9   2.3e-48     2e-44      13     409 ..      50     453 ..      45     517 .. 0.87

  Alignments for each domain:
  == domain 1  score: 151.9 bits;  conditional E-value: 2.3e-48
        MurJ  13 aFnvAfklPnllrrlfaegalssaFvPvlaeak.kkdeekaaefvrkvltllilvlllvtligilaapllirllatgfdeetlelavsllrillpylll 110
                 ++ vA+  Pn++++++a+gal s  vP la    + d+ +  + ++++lt   ++l+ ++++  l+a  +++ l++g  +++l+ ++ +lri++p+l l
  KIR61282.1  50 MYVVANIAPNIIFEIVAGGALASLVVPLLAGPVaAGDRRAVGATTGALLTWTLTLLVPLAALVALLAGPIVEALSSGRSPAELAAGARMLRIFAPQLPL 148
                 799****************************99778888888889999999999999899999999********************************* PP

        MurJ 111 vslsavfgavLnarkkFfapafsPvllNvsvIltllllanklgeeail.........aLaiGvliGgvlqllvqlpalkkaglllkprfafrdeglkkf 200
                 +++  v+ +vL+a  +F+ p ++P+l++++vI+  l +  + g+ a +          L  G+++G+v+ +l  l++l++ gl+l+   af      ++
  KIR61282.1 149 YGIGIVLTGVLQAHRRFAWPVIAPLLSSLTVIVVYLTFGGVEGRGASIagvsrggelILTGGTTLGVVVLSLSLLIPLRRLGLRLRFGYAFDADARARV 247
                 ************************************9999999877777888877666*****************************9999999999** PP

        MurJ 201 lklllptllgvsvsqlnllvdtalAsflaegsvsilayadrilqlPlglfgvsistvlLPrlSrsakekdedevrdllsqairltllllipvsfgllvl 299
                   l+++  ++v+++ql+l+v +  As   +gs+ + + a+ ++ lP ++++v ++++  P+l+ + +++de ++rd+l+ ++r +ll + + ++ l+  
  KIR61282.1 248 GGLAAAGAVTVAAQQLALAVVVKSASGGPTGSPQVFNLAQTMYLLPWAVLAVPLAVAAYPTLAAASAAGDERAYRDTLAATTRGVLLFSCLGAAALAGT 346
                 *************************************************************************************************** PP

        MurJ 300 skpivsllferGnFseedveataevLaayalgLipyalvklllrvfYAredtktPvkislislvlnills.....llllpplgvvglalatslsaligl 393
                 + p+   ++      + d + +a+++a++a gL+ y l+ +l+r++YAr+dt+ ++ ++++   l + l+      ll  +  v++  la+s++ l+  
  KIR61282.1 347 AAPVAAFFY------PDDPAPVAAAIAGFAPGLLGYGLFAVLSRALYARGDTRPATVAITVGW-LAVPLAvlplaALLPRADRVLAVTLANSAGMLLLG 438
                 ****99888......*************************************96655444433.22222223555777788889999999999886666 PP

        MurJ 394 vllyvllrkrlkltea 409
                 vll v +r++++   a
  KIR61282.1 439 VLLVVAARRAAG-PAA 453
                 666666666554.322 PP

>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3  11.6   1.3e-10   1.2e-06      24     158 ..      43     182 ..      13     185 .. 0.89
   2 !   12.9   3.2   7.4e-06     0.066      44     152 ..     297     403 ..     282     411 .. 0.83
   3 ?   -3.9   8.6         1   9.2e+03      22     127 ..     447     513 ..     424     519 .. 0.48

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.3e-10
        MatE  24 gskalAavsialsilsllfv.fllglsta..lttlvgqalGaknfkrakealrqglilllllsliiallvllfseqilslftqdee..vlelakrylri 117
                   ++l+++ ++ +i+  +++ ++ g + a  + +l +  + a+++++++ ++   l ++l l +++a+lv l++ +i+  +++      l++++r+lri
  KIR61282.1  43 ERSDLGGMYVVANIAPNIIFeIVAGGALAslVVPLLAGPVAAGDRRAVGATTGALLTWTLTLLVPLAALVALLAGPIVEALSSGRSpaELAAGARMLRI 141
                 668999********9999998999998884457889*******************************************9977555449999******* PP

        MatE 118 lilgipalalqlvlsgilrgagktkvplyislislllnipl 158
                  ++ +p++++ +vl+g+l++  ++ +p+++ l+s+l  i++
  KIR61282.1 142 FAPQLPLYGIGIVLTGVLQAHRRFAWPVIAPLLSSLTVIVV 182
                 *******************************9999888876 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 7.4e-06
        MatE  44 fllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqilslftqdeevlelakrylrililgipalalqlvlsgilrgagktk 142
                 +++ l++a+ +  + a  a++ ++ + +l  ++  +ll+s++ a+++   + + + +f  d+  +++a+  +   ++g+++++l+ vls++l + g+t+
  KIR61282.1 297 LAVPLAVAAYPTLAAASAAGDERAYRDTLAATTRGVLLFSCLGAAALAGTAAPVAAFFYPDDP-APVAA-AIAGFAPGLLGYGLFAVLSRALYARGDTR 393
                 56668999999*******************************999988888888888855554.55555.456678*********************** PP

        MatE 143 vplyislisl 152
                 ++++++ ++ 
  KIR61282.1 394 PATVAITVGW 403
                 ***9998764 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 1
        MatE  22 rl.gskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqilslftqdeevlelakrylrili 119
                 r  g+ alA+++ a     l ++++  l+ a+t+ +    Ga+ ++ ++                                       +l++ +l++++
  KIR61282.1 447 RAaGPAALAGAARAGAAGLLGGALAA-LAGAATAHALAGAGAGTPTTLA---------------------------------------ALVQGMLSAAV 505
                 44566666665555444444444333.3333333333334555555554.......................................44444444444 PP

        MatE 120 lgipalal 127
                 +g+++la+
  KIR61282.1 506 VGVVFLAV 513
                 44444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 3817.75
//
Query:       KIR61283.1  [L=587]
Description: CTP synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.5e-120  399.6   0.0   6.8e-120  399.3   0.0    1.1  1  CTP_synth_N    CTP synthase N-terminus
    2.1e-46  158.1   0.0      3e-46  157.6   0.0    1.2  1  GATase         Glutamine amidotransferase class-I
    1.9e-07   31.0   0.1    2.4e-06   27.4   0.0    2.5  2  Peptidase_C26  Peptidase C26
     0.0044   17.1   0.0      0.011   15.8   0.0    1.4  1  CbiA           CobQ/CobB/MinD/ParA nucleotide binding domain
  ------ inclusion threshold ------
       0.18   11.9   0.0       0.39   10.9   0.0    1.5  1  Phage_Cox      Regulatory phage protein cox


Domain annotation for each model (and alignments):
>> CTP_synth_N  CTP synthase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  399.3   0.0  1.9e-123  6.8e-120       1     265 []       9     277 ..       9     277 .. 0.98

  Alignments for each domain:
  == domain 1  score: 399.3 bits;  conditional E-value: 1.9e-123
                  EEEEEEE--STTTTHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSSTT--CCCC--EEE-TT--EEETHHHHHHHHHT----GGGEEEHHHHHHHHHH CS
  CTP_synth_N   1 kyilvtGGvvSglGkGiiaaslgallksrglkvtlikiDPYlnvdagtlsplehGEvfvlddGaetDlDlGnYeRfldikltkennittGkiyksvie 98 
                  ++i+vtGGv+S+lGkG++a+slg+ll +rgl+v ++k+DPYlnvd+gt++p++hGEvf+++dGaetDlD+G+YeRfld +l+ + n+ttG+iy++vi 
   KIR61283.1   9 RHIFVTGGVASSLGKGLTASSLGNLLSARGLRVVMQKLDPYLNVDPGTMNPFQHGEVFITEDGAETDLDVGHYERFLDRDLSGKANVTTGQIYSDVIA 106
                  68************************************************************************************************ PP

                  HHHTTTTTT----CCCHHHHHHHHHHHHHH.H.CT...-SEEEEEE-S-TTSGGGHHHHHHHHHHHHHH-TTTEEEEEEEE--B-TTTSSB-HHHHHH CS
  CTP_synth_N  99 kerrGdylGktvqviphvtdeikeriekvakk.ve...advviveigGtvgdieslpfleairqlklelgkenvllihvtlvpvlkaagelktkptqh 192
                  kerrG+ylG+tvqviph+t+eik ri  +a+   e   +dvvi+e+gGtvgdieslpfleairq++++lg++n++++hv+lvp+l+ +gelktkptqh
   KIR61283.1 107 KERRGEYLGDTVQVIPHITNEIKARILGMADPdAEgqiPDVVITEVGGTVGDIESLPFLEAIRQVRHDLGRDNCFYLHVSLVPYLAPSGELKTKPTQH 204
                  ***************************99987443447************************************************************ PP

                  HHHHHHHHT---SEEEEEESS---HHHHHHHHHHCT--GGGEEEEE--S-GGGHHHHHHHCTHHHHHHHHTT- CS
  CTP_synth_N 193 svkelrslGiqpdiivcrsekeleeevkekialfcnvekeavisvkdvesiyevpllleeqglaelileklkl 265
                  sv +lrs+Giqpd +v+r+++e++e+vk k++l+c+v++eav++++d+ siy++p++l+++gl+ +++++l l
   KIR61283.1 205 SVAQLRSIGIQPDALVLRCDREIPEKVKVKLSLYCDVDTEAVVAAPDAPSIYDIPKVLHREGLDAYVVRRLGL 277
                  *********************************************************************9976 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.6   0.0   8.4e-50     3e-46       2     190 .]     312     544 ..     311     544 .. 0.90

  Alignments for each domain:
  == domain 1  score: 157.6 bits;  conditional E-value: 8.4e-50
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHH....THHSTSEEEEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTT...... CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeile....llknpdgilvsgGpgspgvegkieaikearenkiPiLGICLGmQllaiefgr...... 90 
                 l D+y sv+e++  a+   +++v+++++ +++  +      +l ++dgi+++gG+g +g+egki ++++aren++P+LG CLG+Q+++ie++r      
  KIR61283.1 312 LPDAYLSVSEAIRAAGFGHRARVQLRWVPSDDCVTPAgaaaALAGVDGIVIPGGFGVRGIEGKIGTARYARENGVPLLGLCLGLQCMTIEVARhlaglh 410
                 78****************************9888844455459**************************************************777777 PP

                 .............EEE.........EEECEEEEEEEEEEEETTT........CGGTTTTSEEEEEEEEEEEEESG...CHHHTTEEEEEEEETTEEEEE CS
      GATase  91 .............kvv.........kekekehhggtmrlgddet........allyglknevierhrHryevnpk...elepaglevtakseddeelme 156
                              +v+          +  ++++ggtmrlg++++        a++yg   ev erhrHryevn++   +l +agl+++++s d+ +l+e
  KIR61283.1 411 ganslefdeeathPVIatmadqediVAG-RGDLGGTMRLGAYPAklaggsivAEAYGA-TEVSERHRHRYEVNNAyrdQLTKAGLHISGTSPDG-RLVE 506
                 7777777777777333666777776777.7***************************9.9*************99****************888.8999 PP

                 EEEETT...T.EEEESSBTTSTTSTTHHHHHHHHHHHH CS
      GATase 157 iiekkn...p.fvgvQFHPEststpegpellfnflika 190
                 ++e+++   p fv++Q HPE +s+p++p++lf  ++ka
  KIR61283.1 507 FVELDRdlhPfFVATQAHPELKSRPTRPHPLFAAFVKA 544
                 9998877789************************9985 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.14   4.9e+02      52      68 ..     350     366 ..     338     371 .. 0.83
   2 !   27.4   0.0   6.8e-10   2.4e-06      99     216 .]     379     526 ..     372     526 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.14
  Peptidase_C26  52 vkaildkldgllltGgq 68 
                    ++a+l+ +dg++++Gg 
     KIR61283.1 350 AAAALAGVDGIVIPGGF 366
                    678999*********96 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 6.8e-10
  Peptidase_C26  99 raalergvPilgiCrGlqllnvalGGtlyqdiee.qsgltdhrehe................q.....saashavkvekgsllaellgseeievns 172
                    r a e+gvP+lg C+Glq + + +  +l+    +   ++ +   h                 +        +   k+  gs++ae++g++e++   
     KIR61283.1 379 RYARENGVPLLGLCLGLQCMTIEVARHLAGLHGAnSLEFDEEATHPviatmadqedivagrgDlggtmRLGAYPAKLAGGSIVAEAYGATEVSERH 474
                    678899**************9988777764322203344444444467666776666666551444456667888888**********99999999 PP

  Peptidase_C26 173 lHhqaike......laeelrveAvaeDg.viEaieseeak.afvlgvQwHPE 216
                     H+  +++         +l+++ +++Dg ++E++e+ ++   f+++ Q HPE
     KIR61283.1 475 RHRYEVNNayrdqlTKAGLHISGTSPDGrLVEFVELDRDLhPFFVATQAHPE 526
                    9*****99999998899*********9978*****9876448*********9 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     3e-06     0.011       7      50 ..      18      58 ..      11     172 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3e-06
                STTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB- CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  7 kGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglen 50
                 +  GK  +a +L+ +l+ rglrV++ ++Dp  n +    g+ n
  KIR61283.1 18 ASSLGKGLTASSLGNLLSARGLRVVMQKLDPYLNVDP---GTMN 58
                5778***************************988877...4444 PP

>> Phage_Cox  Regulatory phage protein cox
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00011      0.39       6      49 ..      99     142 ..      94     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
                 X---SEEEHHHHHHHHT--HHHHHHHHHHT-S-EEEE--SS--- CS
   Phage_Cox   6 eiasdlvteekFAeliGKtekAvrkmikdgKLPvvelkdPekaa 49 
                 +i sd++++e+  e++G t + + ++ ++ K  ++ ++dP++ +
  KIR61283.1  99 QIYSDVIAKERRGEYLGDTVQVIPHITNEIKARILGMADPDAEG 142
                 789*************************************9543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 4393.07
//
Query:       KIR61284.1  [L=201]
Description: ADP-ribose pyrophosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-16   59.3   0.3      6e-16   58.7   0.3    1.2  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.3   3.3e-20     6e-16       4     115 ..      46     160 ..      43     175 .. 0.76

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 3.3e-20
                 EEEEEEEEETTSEEEEEEESSSSTTT...EESSEEECB.TTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSGCSS CS
       NUDIX   4 ravgvvllnekgevLlvrrskkpfpg...WelPgGkve.pgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfleevegelep 98 
                  av+vv l++ g+v+l+r++ +++ g   WelP+G ++  gE++++AA+REl+EE+ l+a ++++l +lh+   +       +e++ vfl+++  +++ 
  KIR61284.1  46 GAVAVVALDDAGQVVLIRQY-RHPVGrhlWELPAGLMDvSGEDLAAAAARELAEEADLTAGTIDVLVDLHSSPGF------SNEVVRVFLARDLADVPA 137
                 588999**************.8888899**********6699***********************9977653333......678888888555555555 PP

                 T....STTTEEEEE..EEEHHHH CS
       NUDIX  99 n....denevsevr..wvpleel 115
                 +     ++e ++++   v+l+e+
  KIR61284.1 138 GqrheRSEEEADLQvvRVDLDEA 160
                 53444444445554335666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1665.84
//
Query:       KIR61285.1  [L=83]
Description: hypothetical protein TK50_26600 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-17   62.3   5.3    5.2e-17   61.9   5.3    1.1  1  TM2       TM2 domain


Domain annotation for each model (and alignments):
>> TM2  TM2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   5.3   2.9e-21   5.2e-17       2      51 .]      14      66 ..      13      66 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 2.9e-21
         TM2  2 kksklvaylLwffLGglGvHRFYlGktgsGvlqlltfv...Gglgiwwlidli 51
                +ksk+va++L ++LGg+Gv RFY+G+t++Gvlql++++   G+  +w+ id+i
  KIR61285.1 14 DKSKVVAGVLGILLGGFGVGRFYMGDTKTGVLQLVVTLvtcGFGALWGTIDGI 66
                7*************************************9************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 732.35
//
Query:       KIR61286.1  [L=371]
Description: alanine dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-80  268.2   0.3    5.2e-80  267.8   0.3    1.2  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
    4.6e-47  159.7   0.2    8.9e-47  158.8   0.1    1.5  2  AlaDh_PNT_N    Alanine dehydrogenase/PNT, N-terminal domain
    0.00041   19.7   0.1    0.00086   18.7   0.1    1.5  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
     0.0014   17.4   0.7     0.0021   16.8   0.7    1.2  1  HI0933_like    HI0933-like protein
      0.002   18.3   0.9     0.0073   16.5   0.2    2.0  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
     0.0032   16.8   0.5     0.0068   15.7   0.5    1.5  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0072   16.9   0.1      0.047   14.2   0.1    2.2  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0089   15.2   1.0      0.017   14.2   0.7    1.6  2  GIDA           Glucose inhibited division protein A
  ------ inclusion threshold ------
      0.036   14.1   0.2      0.063   13.3   0.2    1.3  1  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
      0.078   13.2   0.6      0.078   13.2   0.6    2.4  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
       0.13   12.1   1.1        0.4   10.6   1.1    1.9  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d


Domain annotation for each model (and alignments):
>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.8   0.3   3.2e-83   5.2e-80       1     213 [.     141     352 ..     141     353 .. 0.98

  Alignments for each domain:
  == domain 1  score: 267.8 bits;  conditional E-value: 3.2e-83
                  HHHHHHHHCSCGCTSEEETTCEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCECEEHCHHHHHHHHHHHH-SEEEE CS
  AlaDh_PNT_C   1 AvleaakalekffggkgtlaGgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lgakfvevlksqeellaeavkeadvvig 97 
                  A +++a++l+++ gg+g+l+Ggv+gv +ak++viG+Gv G++A+a+a gl+a+V +lD++ arl+q ++ + ++ +++++s++ ++++av +ad+vig
   KIR61286.1 141 APQVGAYHLQRQGGGRGILMGGVSGVYAAKTVVIGAGVSGMNAAAIALGLQAEVLLLDKNVARLRQADAiYRGH-LQTVASNAYEIERAVLDADLVIG 237
                  679******************************************************************66666.*********************** PP

                  ---BTTSS---SC-HHHHHTS-TTEEEEETTGGGT-SBTT--TBBTTSEEEEETTEEEEEBSTGGGGSHHHHHHHHHHHHHHHHHHHCHHHTCCHHHC CS
  AlaDh_PNT_C  98 tvlipGkkaPkLvteemvksMkpgsVivDvAidqGGnvetsrltthgepvveekgvvhygvanlpgavprtasalltnntlpyleelladkglkkalk 195
                  +vl+pG+kaP+L+++e v++MkpgsV+vD++idqGG++e+sr+tth+ep++++++ ++y+van+pgavp+t++++ltn tlpy++el a++g+++al+
   KIR61286.1 238 AVLVPGAKAPTLISNELVSRMKPGSVLVDISIDQGGCFEDSRPTTHAEPTYQVHNSIFYCVANMPGAVPHTSTYALTNVTLPYALEL-ANHGWREALR 334
                  ***************************************************************************************.********** PP

                  TSHHHHCCEEEETTEESS CS
  AlaDh_PNT_C 196 edealrkglvvkkGkvtn 213
                  +d+al+ gl++++G+v++
   KIR61286.1 335 RDPALALGLNTHDGQVVY 352
                  ***************986 PP

>> AlaDh_PNT_N  Alanine dehydrogenase/PNT, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.8   0.1   5.5e-50   8.9e-47       1     136 []       4     137 ..       4     137 .. 0.98
   2 ?   -3.2   0.0         6   9.7e+03      72      88 ..     245     264 ..     217     267 .. 0.58

  Alignments for each domain:
  == domain 1  score: 158.8 bits;  conditional E-value: 5.5e-50
                  EE---SSTT----SS-HHHHHHHHHTT-EEEEETTTTGGGTC-HHHHHHTTEEEESCHHHHCTTSSEEEESS--.CHCGGGS-TTCEEEEE--GGCHH CS
  AlaDh_PNT_N   1 gvpkEikagErRvaltPatvkkLvkaGhevlVesgaGegagfsdeeYeeaGaeivesaeevlaeadlilkVkepseeelellkegqtlisflhlaanp 98 
                  g+p+E+k++E+Rva+tPa+v++++++Gh+v+VesgaG g++++dee+++aGa+i ++a+ev+++a+l+lkVkep +ee++++++gq+l+++lhlaa++
   KIR61286.1   4 GIPREVKNHEYRVAITPAGVNEFTRSGHQVFVESGAGVGSSITDEEFAAAGAKILATADEVWDTAELVLKVKEPVAEEYHRMRAGQVLFTYLHLAASK 101
                  89************************************************************************************************ PP

                  HHHHHHHHCTEEEEEGGG-BSSGCCGGGTHHHHHHHHH CS
  AlaDh_PNT_N  99 ellealaekgvtaialElvprisraqsldaLssmaeia 136
                  ++++al ++gvt ia+E+v+     +sl++L++m+e+a
   KIR61286.1 102 ACTDALVDRGVTGIAYETVELP--DRSLPLLAPMSEVA 137
                  *********************5..558*********98 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6
                  S--....CHCGGGS-TTCEE CS
  AlaDh_PNT_N  72 keps...eeelellkegqtl 88 
                  k+p+   +e ++++k+g++l
   KIR61286.1 245 KAPTlisNELVSRMKPGSVL 264
                  44422224445555555555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   5.3e-07   0.00086      34     127 ..     166     268 ..     145     271 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 5.3e-07
                   GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH........CHHHHTCEECSHHHHHHH-SEEEE-S-.-STTTTTSBSHHHHHCSTTTE CS
  2-Hacid_dh_C  34 lsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee........eeeelgvelvsleellaesDivslhlp.ltpetrhlinaeelakmkkga 121
                   ++  +  +iG+G  G ++a ++ +++++v+  d++  + +        + +++  +  ++e ++ ++D v+ ++    ++   li++e  ++mk+g+
    KIR61286.1 166 VYAAKTVVIGAGVSGMNAAAIALGLQAEVLLLDKNVARLRqadaiyrgHLQTVASNAYEIERAVLDADLVIGAVLvPGAKAPTLISNELVSRMKPGS 262
                   56677889*************************98764333345666656666678889*********998765524678889************** PP

                   EEEESS CS
  2-Hacid_dh_C 122 iliNta 127
                   +l+ ++
    KIR61286.1 263 VLVDIS 268
                   **9876 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.7   1.3e-06    0.0021       2      34 ..     170     202 ..     169     208 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.3e-06
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakk 34 
                  +++viG+G +G+ aA+ a   +++Vlll+k+ +
   KIR61286.1 170 KTVVIGAGVSGMNAAAIALGLQAEVLLLDKNVA 202
                  689***************************965 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.61     1e+03      36      60 ..      48      72 ..      23     112 .. 0.80
   2 !   16.5   0.2   4.5e-06    0.0073       4      90 ..     173     268 ..     170     271 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.61
                   HHHHHTTEEE-SSHHHHHHHCSEEE CS
  NAD_binding_2 36 eelvaegakaaesieelvasldvvi 60
                   ee++a+gak+++++ e+ +++++v+
     KIR61286.1 48 EEFAAAGAKILATADEVWDTAELVL 72
                   5778888888888888888887765 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 4.5e-06
                    EE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.......EEE-SSHHHHHHHCSEEE.E-SSSHHHHHHHHHS.HCCC--TT-EEEE-S CS
  NAD_binding_2   4 fiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.......akaaesieelvasldvvi.tmvkagkavdevieg.llealkkgdilidgs 90 
                    +iG Gv G+n a   l  + +v + + + ++++++ a         a+ a++ie +v ++d+vi  ++  g++  ++i++ l++++k+g++l+d s
     KIR61286.1 173 VIGAGVSGMNAAAIALGLQAEVLLLDKNVARLRQADAIYrghlqtvASNAYEIERAVLDADLVIgAVLVPGAKAPTLISNeLVSRMKPGSVLVDIS 268
                    8*************************9988777665543457888899999999999999999843344555566666556*************87 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.5   4.1e-06    0.0068     143     185 ..     169     211 ..     134     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.1e-06
                  SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalaklgkevtlveardrllraldkel 185
                  +++vv+G+G+ G+  Aa +  l++ev l++ +   lr+ d   
   KIR61286.1 169 AKTVVIGAGVSGMNAAAIALGLQAEVLLLDKNVARLRQADAIY 211
                  7899***************999999999998877776666554 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.3   2.1e+03      32      58 ..      88     115 ..      85     121 .. 0.76
   2 !   14.2   0.1   2.9e-05     0.047       1      39 [.     170     208 ..     170     221 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.3
                 SSSS.TTSSHHHHHHHHHHHHHTTEEEE CS
   Pyr_redox  32 dkll.rllDeeaskilqeklekngievl 58 
                  ++l  +l  +ask++++ l ++g++ +
  KIR61286.1  88 GQVLfTYLHLAASKACTDALVDRGVTGI 115
                 566667777789***********99855 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.9e-05
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllD 39 
                 k vv+G+G++g+ +A+++  l+++V +++ +   lr+ D
  KIR61286.1 170 KTVVIGAGVSGMNAAAIALGLQAEVLLLDKNVARLRQAD 208
                 579**********************99988766666655 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.1   1.7e+03      31      69 ..      25      63 ..       9      65 .. 0.77
   2 !   14.2   0.7   1.1e-05     0.017       2      35 ..     171     204 ..     170     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
                -GGGTT--SSSSEEE-TTHHHHHHHHHHHT-SHHHHHHH CS
        GIDA 31 kldtiaelsCnpsiggiakgllvrEidalggliikaadk 69
                ++ + ++ +  +s  g+++++  +E  a g  i  +ad+
  KIR61286.1 25 EFTRSGHQVFVESGAGVGSSITDEEFAAAGAKILATADE 63
                555667778888899999999999999999999999997 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.1e-05
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGT CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLithkldti 35 
                  +ViG+G +G+ AA+ a  l a+vlL+ +++ ++
  KIR61286.1 171 TVVIGAGVSGMNAAAIALGLQAEVLLLDKNVARL 204
                 58*************************8777665 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   3.9e-05     0.063      10     113 ..     166     269 ..     161     271 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.9e-05
                   .TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.E.T-EEEEGCGHHHHHHT-SEEEE-S...SSSS-.SB-HHHHHCCHHH CS
  Shikimate_DH  10 lkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkge.eiealkleelkellaeadvvisat...aseep.ilekeeveealkk 101
                   +  +k ++iGaG  +  +a   l  +++ v+ +  +++r ++    ++g+ ++ a +  e+++++ +ad+vi a+   +++ p ++++e v++++  
    KIR61286.1 166 VYAAKTVVIGAGVSGMNAAAIALGLQAE-VLLLDKNVARLRQADAIYRGHlQTVASNAYEIERAVLDADLVIGAVlvpGAKAPtLISNELVSRMKP- 260
                   567899*********9999999988888.**********99987777555156678899**************98444344442556666666553. PP

                   .S..EEEEE--S CS
  Shikimate_DH 102 rkkplllvDiav 113
                        +lvDi++
    KIR61286.1 261 ---GSVLVDISI 269
                   ...479999985 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2       2.3   3.7e+03       4      13 ..     161     170 ..     161     172 .. 0.88
   2 ?   13.2   0.6   4.8e-05     0.078       1      28 [.     173     200 ..     173     202 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.3
                    -SHHHHHHHH CS
  NAD_binding_8   4 aGlsGlvaAy 13 
                    +G+sG +aA 
     KIR61286.1 161 GGVSGVYAAK 170
                    8*******97 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.8e-05
                    EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekr 28 
                    ++GaG+sG+ aA+ +   +++vlll+k+
     KIR61286.1 173 VIGAGVSGMNAAAIALGLQAEVLLLDKN 200
                    8*************99999*******95 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.1   0.00024       0.4       3      51 ..     172     220 ..     170     240 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00024
                 EEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTT CS
     3HCDH_N   3 aviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklve 51 
                  viGaG+ G   aa+++    eV l+d + ++l++a +  +  l+ +++
  KIR61286.1 172 VVIGAGVSGMNAAAIALGLQAEVLLLDKNVARLRQADAIYRGHLQTVAS 220
                 69*********************************99988888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2743.43
//
Query:       KIR61287.1  [L=307]
Description: chromosome partitioning protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-61  208.0   0.0    1.3e-61  207.6   0.0    1.2  1  AAA_31       AAA domain
    1.3e-24   86.7   0.2    3.1e-23   82.2   0.2    2.2  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    9.9e-12   44.8   0.0    6.4e-11   42.2   0.0    1.9  2  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
    3.7e-11   43.0   0.0    5.7e-10   39.1   0.0    2.1  1  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
    2.2e-10   40.3   0.3    1.3e-05   24.7   0.1    2.2  2  MipZ         ATPase MipZ
      6e-09   35.7   0.2    1.5e-08   34.4   0.2    1.9  1  ParA         NUBPL iron-transfer P-loop NTPase
    3.3e-08   33.1   0.1      8e-08   31.8   0.1    1.8  1  ArsA_ATPase  Anion-transporting ATPase
    0.00066   19.1   0.1     0.0017   17.7   0.0    1.6  2  VirC1        VirC1 protein
     0.0024   17.2   0.0      0.021   14.1   0.0    2.1  2  DUF1611      Domain of unknown function (DUF1611_C) P-loop do
  ------ inclusion threshold ------
       0.02   14.5   0.0       0.14   11.8   0.0    2.2  2  SRP54        SRP54-type protein, GTPase domain
      0.027   13.4   0.4       0.06   12.3   0.1    1.6  2  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
      0.056   11.6   0.0      0.094   10.9   0.0    1.2  1  FTHFS        Formate--tetrahydrofolate ligase
       0.11   12.3   0.0        0.2   11.4   0.0    1.4  1  CLP1_P       mRNA cleavage and polyadenylation factor CLP1 P-


Domain annotation for each model (and alignments):
>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.6   0.0   9.7e-65   1.3e-61       2     176 ..      53     228 ..      52     229 .. 0.98

  Alignments for each domain:
  == domain 1  score: 207.6 bits;  conditional E-value: 9.7e-65
      AAA_31   2 kvIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQanattglgiekneiektlyevli.eeknikeaiiktkvenldlipssidLaeaeielve 99 
                 ++Ia+anqKGGvGKTTt++nl+aala++g kvLlvD+DpQ+++++glg++ ++++ ++y++l+ ++++ ++++ikt+v  l+l+p++idL++aei+lv+
  KIR61287.1  53 RIIAMANQKGGVGKTTTTINLGAALAEYGRKVLLVDFDPQGALSVGLGVNPHNLDLSVYNLLMqDDVTAEDVLIKTDVAGLHLLPANIDLSAAEIQLVN 151
                 8*************************************************************9899********************************* PP

      AAA_31 100 lekkeeilkellekvkdeYDyiiiDcpPsLglltenaLvasdsviipvqaeayaleGleqllktieevkkklnpkle 176
                    +e +l ++l+++++eYDyi+iDc+PsLgll++naL+++  v+ip+++e+++l+G++ ll+ti++v+++ln +le
  KIR61287.1 152 EVAREMALARVLRSIRKEYDYILIDCQPSLGLLAINALTVAHGVLIPLECEFFSLRGVALLLDTIDKVRERLNFDLE 228
                 ************************************************************************98887 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.2   2.2e-26   3.1e-23       1     127 [.      55     279 ..      55     280 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 2.2e-26
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 ia+a++kGGvGKTt+++nL++ala+ g++VllvD+Dpq+ ++    gl  + ++                                             
  KIR61287.1  55 IAMANQKGGVGKTTTTINLGAALAEYGRKVLLVDFDPQGALSV---GLGVNPHNldlsvynllmqddvtaedvliktdvaglhllpanidlsaaeiqlv 150
                 799**************************************98...77777777799****************************************** PP

                 .........................................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHH CS
                 .........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 .........................................................dlkrllellealgkkkalllkiagvvlnrvdgeneetllkea 96 
                                                                          ++  ll ++ +++++++  l++ g++++++d++  +t+ ++ 
  KIR61287.1 151 nevaremalarvlrsirkeydyilidcqpslgllainaltvahgvlipleceffslrGVALLLDTIDKVRERLNFDLELEGILATMYDSR--TTHCRQV 247
                 ******************************************************9999999999999999997777**************..******* PP

                 HHHHHHHCTS-EEE.EEE--CCHCCCCHHTS- CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
        CbiA  97 leelkqrygvpvlg.viprdeavaeapargep 127
                 l+++ +++g++v++ vi ++++++e+   g p
  KIR61287.1 248 LQRVVEAFGDKVYQtVITKTVKFPESTVAGAP 279
                 ***********************999888776 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   4.6e-14   6.4e-11       3     139 ..      54     193 ..      52     203 .. 0.79
   2 ?    0.5   0.0      0.26   3.6e+02     195     231 ..     262     298 ..     227     301 .. 0.79

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 4.6e-14
    CBP_BcsQ   3 vlalqGvRGGvGttsllaaLawalhelgesvlviDlspdnlLrlhFnvdieqregwaraeldgapwrqaaley...apgldllPfG.elnveekenlqq 97 
                 ++a+   +GGvG+t+ +  L+ al e g +vl++D+ p+  L +   v+ ++ +  +  +l + +  +  + +     gl+llP    l+++e + l +
  KIR61287.1  54 IIAMANQKGGVGKTTTTINLGAALAEYGRKVLLVDFDPQGALSVGLGVNPHNLDLSVYNLLMQDDVTAEDVLIktdVAGLHLLPANiDLSAAEIQ-LVN 151
                 78888999************************************99998887776666666666665544333112579*****87245555555.666 PP

    CBP_BcsQ  98 laekaeallaalkelkeqyrwillDlpagasaltrellalad 139
                   +++ al++ l++++++y++il+D++     l+ ++l++a 
  KIR61287.1 152 EVAREMALARVLRSIRKEYDYILIDCQPSLGLLAINALTVAH 193
                 6777889********************998888877777665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.26
    CBP_BcsQ 195 lvihrDealaEalaakqPlgeyrpdslaaeevktLan 231
                  vi +   ++E+ +a +P+++  p s  a++ ++La 
  KIR61287.1 262 TVITKTVKFPESTVAGAPITTLDPASSGARNYRQLAR 298
                 567777778999**********************996 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   4.2e-13   5.7e-10       7     247 ..      60     303 ..      53     306 .. 0.77

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 4.2e-13
   Fer4_NifH   7 GkGGiGksttsqnlsaalaemgkkvlivGCDPkaDstrlllggkaqetvldtlrekgav.edvkvedvvkkGyggvkcvesGGPepGvGCaGrgvit.. 102
                  kGG+Gk+tt+ nl aalae g+kvl+v  DP+     + lg   +   ld+   + ++ +dv+ edv+ k  ++v  +     +     a   +++  
  KIR61287.1  60 QKGGVGKTTTTINLGAALAEYGRKVLLVDFDPQGALS-VGLGVNPH--NLDLSVYNLLMqDDVTAEDVLIK--TDVAGLHLLPANIDLSAAEIQLVNev 153
                 59******************************96543.44544444..455544444433899*****988..77777777777777777766555411 PP

   Fer4_NifH 103 ..aielleelgayd.dlDfvlyDvLGDvvCGGfalPiredkaqevyivtsgelmalyaanniakgiekyaksgg..vrlgGli...insrkvddereli 193
                    + l   l     ++D++l D       G +a+      a+ v+i  ++e+ +l     +  +i k +++ +  ++l G++   ++sr +++ r+++
  KIR61287.1 154 arEMALARVLRSIRkEYDYILIDCQPS--LGLLAINAL-TVAHGVLIPLECEFFSLRGVALLLDTIDKVRERLNfdLELEGILatmYDSR-TTHCRQVL 248
                 0055566666655537*******8765..477777655.79***************************99987655999**972224555.89999*** PP

   Fer4_NifH 194 ekfaeelgtkvlevvP.rdeivrkaelrkktvieyapeseqakeyrelarkilen 247
                 ++ +e+ g kv ++v  ++ +  ++ ++   ++  +p s+ a +yr+lar+++ +
  KIR61287.1 249 QRVVEAFGDKVYQTVItKTVKFPESTVAGAPITTLDPASSGARNYRQLAREVIAA 303
                 ***********987650555688999*************************9876 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   9.3e-09   1.3e-05       2      39 ..      54      91 ..      53      97 .. 0.94
   2 !   13.8   0.0   1.9e-05     0.026      65     136 ..     137     206 ..     120     240 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 9.3e-09
                EEEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--T CS
        MipZ  2 vivlgnekGGsGksttavhvavaLlkkGarvaaidldl 39
                +i ++n+kGG Gk+tt++ +  aL++ G +v  +d+d 
  KIR61287.1 54 IIAMANQKGGVGKTTTTINLGAALAEYGRKVLLVDFDP 91
                899********************************995 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.9e-05
                 -EEE-SSS-HHHHTTS-HHHHHHHHHHHHHHHHHH-SEEEEE--SS--HHHHHHHHT-SEEEEEEESSHHHH CS
        MipZ  65 pealalseaeeaeveeeeeaevaeleelvadleaeldfividtPGsdsalsrlahsladtlvtPlndsfvdf 136
                 p  + ls ae + v+e + +   +l+++++++ +e+d+i+id+  s   l+  a ++a  ++ Pl   f  +
  KIR61287.1 137 PANIDLSAAEIQLVNEVAREM--ALARVLRSIRKEYDYILIDCQPSLGLLAINALTVAHGVLIPLECEFFSL 206
                 344467777777776655555..9*****************************************9888766 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.2   1.1e-11   1.5e-08       4     125 ..      53     183 ..      51     301 .. 0.70

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 1.1e-11
        ParA   4 kviavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGp.siprllgvee..........ekpeqsekkliPveakgikvmSigfllesedeavvw 91 
                 ++ia++  KGGVGK+t+++nl +aLa+ g kv l+D D  G  s+   ++ ++          ++  + e+ li +++ g++++  ++ l+  +  +v 
  KIR61287.1  53 RIIAMANQKGGVGKTTTTINLGAALAEYGRKVLLVDFDPQGAlSVGLGVNPHNldlsvynllmQDDVTAEDVLIKTDVAGLHLLPANIDLSAAEIQLV- 150
                 6899**********************************999634433333333555555555422222244566666777777777777774444444. PP

        ParA  92 rGpmkskaikqllkdvewgelDyLiiDlPPGtgD 125
                      + a+ ++l++++ +e Dy++iD+ P  g 
  KIR61287.1 151 NEVAREMALARVLRSIR-KEYDYILIDCQPSLGL 183
                 44455566677776665.6678888888877764 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   5.8e-11     8e-08       7     135 ..      59     180 ..      52     273 .. 0.73

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 5.8e-11
                  EESTTSSHHHHHHHHHHHHHHTTS-EEEEE-STTTHHHHHHTS--BSS-EEETSSEEEEE--HHHHHHHHHCCHHGGGSCCHHHHHHHHHHHHHHTSS CS
  ArsA_ATPase   7 gGKGGVGKttvsaatavklsekgkkvllistDPAhslsDsfdqklgkeptkvkeNLsavEidpeveleeakqevqkeeeallgleeledvlaeelasl 104
                    KGGVGKtt    +++ l+e g+kvll+  DP   ls  +  +  +    v + L+  ++ +e  l ++  +  +          + d+ a e + +
   KIR61287.1  59 NQKGGVGKTTTTINLGAALAEYGRKVLLVDFDPQGALSVGLGVNPHNLDLSVYNLLMQDDVTAEDVLIKTDVAGLHLLP------ANIDLSAAEIQLV 150
                  46********************************999988887655555555544444444443333333222222222......3333333333332 PP

                  TTHHHHHHHHHHHHHHHCSSSSEEEEESBSC CS
  ArsA_ATPase 105 PGideilsfeellkyvkeeeydvvvlDtaPT 135
                    +   ++++++l+ ++ +eyd++++D  P 
   KIR61287.1 151 NEVAREMALARVLRSIR-KEYDYILIDCQPS 180
                  22333456666666664.6899999999884 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.2e-06    0.0017       3      40 ..      54      91 ..      52      97 .. 0.90
   2 ?   -2.0   0.0       1.3   1.8e+03      82     107 ..     168     195 ..     145     223 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.2e-06
       VirC1  3 litfcslkGGaGkttalmglcsalasdgkrvalfeade 40
                +i+++  kGG Gktt+ + l +ala  g++v l + d 
  KIR61287.1 54 IIAMANQKGGVGKTTTTINLGAALAEYGRKVLLVDFDP 91
                79999****************************99886 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
       VirC1  82 eGfdyaladtrg..Gsselnntiiassd 107
                 + +dy l+d +   G   +n+  +a   
  KIR61287.1 168 KEYDYILIDCQPslGLLAINALTVAHGV 195
                 5688888888752255556666666544 PP

>> DUF1611  Domain of unknown function (DUF1611_C) P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.5e-05     0.021      22      63 ..      62     103 ..      45     110 .. 0.84
   2 ?    0.6   0.0      0.22     3e+02      79     106 ..     163     188 ..     124     197 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
     DUF1611  22 cavGKrttaleleealeerGlkaafvaTgqtgiliagegvvl 63 
                   vGK tt+++l +al e+G k+ +v  +++g+l  g gv +
  KIR61287.1  62 GGVGKTTTTINLGAALAEYGRKVLLVDFDPQGALSVGLGVNP 103
                 569*******************************99999875 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.22
     DUF1611  79 vkkaaeeeepdlilveGQgsLthpaysg 106
                   ++   +e d+il++ Q sL   a ++
  KIR61287.1 163 LRSIR--KEYDYILIDCQPSLGLLAINA 188
                 33444..455999999999997665555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.9e-05      0.14      11      38 ..      63      90 ..      53     124 .. 0.90
   2 ?   -0.4   0.0      0.54   7.5e+02      68      91 ..     154     177 ..     133     181 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.9e-05
                TSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54 11 GaGKTttlaKLaallkkegkkvllvaaD 38
                G+GKTtt+  L a l + g+kvllv  D
  KIR61287.1 63 GVGKTTTTINLGAALAEYGRKVLLVDFD 90
                8***********************9888 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.54
                 HHHHHHHHHHHHHHTTSSEEEEEE CS
       SRP54  68 paavakeavekakeekidvvlvDT 91 
                 + ++a + v +  ++++d++l+D 
  KIR61287.1 154 AREMALARVLRSIRKEYDYILIDC 177
                 5566777777888999******95 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   4.3e-05      0.06      27      72 ..      50      96 ..      44     101 .. 0.81
   2 ?   -2.7   0.0       1.7   2.3e+03       8      28 ..     237     257 ..     233     276 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.3e-05
                S-SEEEEEEE-.TTSSHHHHHHHHHHHHHCTT--EEEEEE------- CS
        MeaB 27 GraqvvGltGv.PGaGkstlvealglelrrrGkrvavlavDPsspft 72
                G a+ + +     G+Gk t++ +lg+ l++ G++v ++  DP    +
  KIR61287.1 50 GPARIIAMANQkGGVGKTTTTINLGAALAEYGRKVLLVDFDPQGALS 96
                55666666543158****************************87765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.7
                 HH--SHHHHHHHHHHGGG-S- CS
        MeaB   8 veserpeakellerllakaGr 28 
                  +s++++ +++l+r+++  G 
  KIR61287.1 237 YDSRTTHCRQVLQRVVEAFGD 257
                 556666666666666665553 PP

>> FTHFS  Formate--tetrahydrofolate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.8e-05     0.094      60      91 ..      55      86 ..      48      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.8e-05
                EESS--TT--SHHHHHHHHHHHHHHTT--EEE CS
       FTHFS 60 taitPtplGeGKttttigLaqalnklgkkava 91
                 a++  + G GKtttti L  al++ g+k+++
  KIR61287.1 55 IAMANQKGGVGKTTTTINLGAALAEYGRKVLL 86
                57888899*******************99875 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014       0.2       4      32 ..      63      91 ..      61     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
      CLP1_P  4 dsGKSTlarlLlNyalrkgrkpvyvDlDv 32
                 +GK+T + +L   +++ grk+++vD D+
  KIR61287.1 63 GVGKTTTTINLGAALAEYGRKVLLVDFDP 91
                59**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2014.48
//
Query:       KIR61288.1  [L=317]
Description: RNA 3-phosphate cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-54  183.7   0.0    2.2e-54  183.4   0.0    1.1  1  SMC_ScpB  Segregation and condensation complex subunit ScpB


Domain annotation for each model (and alignments):
>> SMC_ScpB  Segregation and condensation complex subunit ScpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.4   0.0   1.3e-58   2.2e-54       2     160 .]     144     301 ..     143     301 .. 0.99

  Alignments for each domain:
  == domain 1  score: 183.4 bits;  conditional E-value: 1.3e-58
    SMC_ScpB   2 iiEAiLfvageplsleeLakilelskeeveealeeLkeeyeeedrglelvevaggyrlvtkpelaevvkklvkekkktrLsqaaletLaiIaykqpvtr 100
                 ++EAiL+v +ep+s  +La++le s+e++  +l+++++ y+++++g+el++ agg+rl+t+pe+a +v+++v + ++ rL+qaaletLa++ay+qpvtr
  KIR61288.1 144 ALEAILLVVDEPVSELTLAQVLEQSPERIGPLLDDIAAGYTAAGHGFELRRAAGGWRLYTRPEYATYVERFVLDGQSVRLTQAALETLAVVAYRQPVTR 242
                 69*********************99************************************************************************** PP

    SMC_ScpB 101 aeieeiRGvnsdsvvrtLlerglieekgrkeepgrpilYgtTekFleyfglksleeLpkl 160
                 ++i++iRGvn+d+v+rtL++rgl+ee+g ++ +g ++lY+tT  Fle++gl+s++eLp+l
  KIR61288.1 243 SRISAIRGVNCDGVLRTLVSRGLVEECGAEPDSG-AFLYRTTTMFLEKLGLNSVDELPPL 301
                 **********************************.***********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2181.87
//
Query:       KIR61289.1  [L=256]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-21   77.2   0.0    2.2e-21   76.6   0.0    1.3  1  PseudoU_synth_2  RNA pseudouridylate synthase
    1.1e-10   41.1   0.5    3.1e-10   39.6   0.5    1.9  1  S4               S4 domain


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   2.5e-25   2.2e-21       2     159 ..      80     212 ..      79     213 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 2.5e-25
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegai 95 
                      ++++nKP gv+++  +     ++ +t  ++ + ++ ++++++v+RLD +++Gllll++++++a++l++  ++++v K+Yl+ v  +p++++   
       KIR61289.1  80 YLALNKPRGVVSTMAD-----EKGRTALSDFVGHRVEQRVYHVGRLDADSEGLLLLTNDGNLAHRLTH--PSYGVPKTYLCEVA-GPIPRN--- 162
                      899*************.....555555556667799********************************..*************7.444443... PP

  PseudoU_synth_2  96 kkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhla 159
                         + k      +    +e +dg  +v  +kv++       +k++ vel+l++Grkh +R+ la
       KIR61289.1 163 ---LGK------RLAAGVELEDGPVTVDSFKVVDTL-----GKTAQVELTLHEGRKHIVRRLLA 212
                      ...333......55556688****************.....********************997 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.5   3.4e-14   3.1e-10       1      43 [.      19      59 ..      19      65 .. 0.92

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 3.4e-14
                EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE- CS
          S4  1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVk 43
                +RL+kvla++g +s rr +++lI  +rV+VNGkv++  ++r +
  KIR61289.1 19 ERLQKVLAAAGVGS-RRACEDLIFRRRVTVNGKVAQ-LGDRAD 59
                6************9.********************9.998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2018.03
//
Query:       KIR61290.1  [L=226]
Description: cytidylate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-67  225.8   4.5    5.4e-67  225.6   4.5    1.0  1  Cytidylate_kin   Cytidylate kinase
    1.8e-08   35.0   0.0      4e-08   33.9   0.0    1.6  1  AAA_18           AAA domain
    2.9e-06   27.5   0.9    1.8e-05   25.0   0.9    1.9  1  Cytidylate_kin2  Cytidylate kinase-like family
      3e-05   24.2   0.5      0.013   15.7   0.0    2.2  2  SKI              Shikimate kinase
    4.7e-05   23.6   3.8    0.00018   21.7   0.0    2.6  2  AAA_33           AAA domain
    0.00046   20.0   0.3      0.024   14.4   0.1    2.7  3  PRK              Phosphoribulokinase / Uridine kinase family
    0.00076   19.9   0.2     0.0028   18.1   0.0    1.9  2  AAA_17           AAA domain
     0.0031   17.8   0.1     0.0073   16.6   0.0    1.6  2  AAA_22           AAA domain
     0.0034   17.8   0.4     0.0034   17.8   0.4    2.1  2  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.022   14.7   0.0    1.5  1  NACHT            NACHT domain
      0.017   15.1   0.1      0.043   13.8   0.0    1.7  2  AAA_5            AAA domain (dynein-related subfamily)
      0.019   15.0   0.0      0.041   14.0   0.0    1.5  2  ADK              Adenylate kinase
      0.076   13.1   0.1        0.2   11.7   0.1    1.6  2  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
      0.087   12.6   0.0        0.2   11.4   0.0    1.6  1  AAA_29           P-loop containing region of AAA domain
      0.091   12.2   0.3       0.33   10.3   0.0    1.8  2  ParA             NUBPL iron-transfer P-loop NTPase
       0.14   12.7   0.0       0.37   11.3   0.0    1.6  2  ABC_tran         ABC transporter
       0.16   12.3   0.0       0.25   11.7   0.0    1.3  1  RNA_helicase     RNA helicase
       0.24   11.3   0.0       0.37   10.7   0.0    1.2  1  Rad17            Rad17 P-loop domain


Domain annotation for each model (and alignments):
>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.6   4.5   5.5e-70   5.4e-67       1     206 [.      12     217 ..      12     222 .. 0.96

  Alignments for each domain:
  == domain 1  score: 225.6 bits;  conditional E-value: 5.5e-70
                     EEEE-STTSSHHHHHHHHHHHHT-EEEEHHHHHHHHHHHHHHTT--TT-HHHHHHHHHT--EEEEEE....EEEETTEE-TTGGGSHHHHHHHHH CS
  Cytidylate_kin   1 iaiDGPagsGKssvaralaeklglkyldtgalYRalalaalrrkvdlldeaalvelakevelsfeae....kvllngedveeelrsdevekavSa 91 
                     +a+DGP+gsGKs+v+r+la  lg++yldtga+YRa+++a+lr+ vdl+d +++ ++a+ev+l++ ++    +v  +g  v+ e+r  ev+ avSa
      KIR61290.1  12 VAVDGPSGSGKSTVSRRLAVSLGARYLDTGAMYRAITWAVLRSGVDLTDAESVGKVAAEVDLRIGTDpqgyAVTADGVTVDAEIRGPEVTGAVSA 106
                     79***************************************************************9999999999******************** PP

                     HTTSHHHHHHHHHHHHTT-B.SSBEEEEESSIIIIISTT-SEEEEEE--HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHCTSSS-S--- CS
  Cytidylate_kin  92 vaaipavRailvkklrelvk.karvvveGRDigtvvfpdaelKifldAsveeRakRRlkqlkakgtsvsleellaeikeRDklDkerevgpLkla 185
                     vaa+p+vRa lv ++rel+   + +vveGRDig+vv pda+lK++l+As  +Ra+RR ++      ++++++  a++++RD+lD++r+++pL++a
      KIR61290.1 107 VAAVPSVRALLVARQRELIAkAGWIVVEGRDIGSVVAPDADLKVYLTASEAARAQRRSAE-----DATDVAATAADLARRDRLDSTRKADPLQQA 196
                     *****************988577899********************************99.....345788999********************* PP

                     TT-EEEETTTS-HHHHHHHHH CS
  Cytidylate_kin 186 edaliidtskltieevvekil 206
                     +da+++dt++l+i++vv+++ 
      KIR61290.1 197 ADAVVLDTTELGIDQVVDRLR 217
                     ******************976 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0     4e-11     4e-08       1     117 [.      12     170 ..      12     183 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 4e-11
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.........................gvnlrdvakenglllevdpe...aldeskrldedkldklldaleenss.. 69 
                 +++ G++G+GK+t++++L+ +lg                           + +++va+e +l+++ dp+    + +   +d + +   +++   + +  
  KIR61290.1  12 VAVDGPSGSGKSTVSRRLAVSLGAryldtgamyraitwavlrsgvdltdAESVGKVAAEVDLRIGTDPQgyaVTADGVTVDAEIRGPEVTGAVSAVAav 110
                 5788**************99986668999999***************************************9777777778888777777777777778 PP

      AAA_18  70 .............aleegknlvidghlaeleseaakdikkvvLtaspeelleRlekRgyee 117
                                ++++++v++g+    + + + d+k v+Ltas+  +++R ++ + ++
  KIR61290.1 111 psvrallvarqreLIAKAGWIVVEGRDIGSVVAPDADLK-VYLTASEAARAQRRSAEDATD 170
                 88**********9899***********************.*************99988776 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.9   1.8e-08   1.8e-05       1     151 [.      11     183 ..      11     191 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.8e-08
  Cytidylate_kin2   1 iITIsreyGsgGetigeaLAekLglpfydreiieevak....elglseeeveevde.rsrlssflskllaarvagdtl................ 73 
                      ++++++  Gsg++t+ ++LA  Lg +++d   + +++     ++g++   +e+v + ++ + +++            +                
       KIR61290.1  11 VVAVDGPSGSGKSTVSRRLAVSLGARYLDTGAMYRAITwavlRSGVDLTDAESVGKvAAEV-DLRIGTDP-------Qgyavtadgvtvdaeir 96 
                      68899999**********************6665554322228899999998888842222.22222222.......112223467788999** PP

  Cytidylate_kin2  74 .............deklddelfeaqervirelaaeesvVivGRg.adliLkdrpnvlrvfltapledrvkrvaereglseeearekiketDk 151
                                     +    l+ +q+++i +++    +V+ GR  + ++  d    l+v+lta+++ r++r +++   + + ++ ++ ++D+
       KIR61290.1  97 gpevtgavsavaaVPSVRALLVARQRELIAKAG---WIVVEGRDiGSVVAPDA--DLKVYLTASEAARAQRRSAEDATDVAATAADLARRDR 183
                      *******99998544555557777799999885...89*****7256555554..6***************999998877777777777776 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.3e-05     0.013       1      23 [.      18      40 ..      18      50 .. 0.91
   2 !    7.1   0.1    0.0056       5.5      84     153 ..     145     216 ..     114     221 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.3e-05
                TTSSHHHHHHHHHHHHTSEEEEH CS
         SKI  1 mGaGKstvGkllAkklglefiDl 23
                +G+GKstv ++lA +lg +++D+
  KIR61290.1 18 SGSGKSTVSRRLAVSLGARYLDT 40
                59********************8 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0056
                 HHSEEEEEE--HHHHHHHHHHTTS.SGGGCSCHH.HHHHHHHHHHHHHHHCCSSCEEEECTSSHHHHHHHHH CS
         SKI  84 ekgiviyLdvsleellerlkadke.RPllqeksk.eeelleelaereplyeeaadvvvdeseeskeevaeei 153
                 +  + +yL +s  + ++r +a++    ++++ +  ++++l++ ++ +pl + a++vv d++e   ++v++++
  KIR61290.1 145 DADLKVYLTASEAARAQRRSAEDAtDVAATAADLaRRDRLDSTRKADPLQQAADAVVLDTTELGIDQVVDRL 216
                 55677999999999888887777744444444442455556666899**************99999999886 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.8e-07   0.00018       1      38 [.      11      48 ..      11      76 .. 0.87
   2 ?    1.7   0.9      0.26   2.6e+02      58      79 ..     186     206 ..     123     226 .] 0.53

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.8e-07
      AAA_33  1 lvllvGlpGsGKstlaerllkklgavllssdtlrrrlf 38
                +v + G++GsGKst+++rl+  lga  l++ +++r+++
  KIR61290.1 11 VVAVDGPSGSGKSTVSRRLAVSLGARYLDTGAMYRAIT 48
                68889*******************99999988888765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.26
      AAA_33  58 ilnelarkalsagrnvildatn 79 
                  + + a+  ++a+ +v+ld t 
  KIR61290.1 186 ST-RKADPLQQAADAVVLDTTE 206
                 21.3344444555555555555 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   2.4e-05     0.024       1      27 [.      11      37 ..      11      56 .. 0.85
   2 ?    0.4   0.0      0.45   4.5e+02     123     166 ..      64     107 ..      54     121 .. 0.81
   3 ?    1.7   0.0      0.18   1.8e+02     103     151 ..     121     167 ..     112     202 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.4e-05
         PRK  1 vIgvagsSGaGkttvarklekifgrek 27
                v++v g+SG+Gk+tv+r+l  ++g   
  KIR61290.1 11 VVAVDGPSGSGKSTVSRRLAVSLGARY 37
                789****************99988654 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.45
         PRK 123 dervaelldlkiyvdisidlelarklqRDiaeRGrsleavldsi 166
                 + +va  +dl+i+ d++     a  ++ D + RG ++ + ++ +
  KIR61290.1  64 VGKVAAEVDLRIGTDPQGYAVTADGVTVDAEIRGPEVTGAVSAV 107
                 4569999*********9988888888888888888777666555 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.18
         PRK 103 keeliegadvlviEGlhalydervaelldlkiyvdisidlelarklqRD 151
                 ++eli++a  +v+EG        va  +dlk+y+ +s+  +  r+   D
  KIR61290.1 121 QRELIAKAGWIVVEGRD--IGSVVAPDADLKVYLTASEAARAQRRSAED 167
                 55666666666666643..2233888899****9999877776665555 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.8e-06    0.0028       2      34 ..      16      48 ..      16     109 .. 0.79
   2 ?   -0.7   0.0       1.8   1.8e+03     103     122 ..     147     166 ..     134     201 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.8e-06
                E-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHH CS
      AAA_17  2 GgPGsGKgtqceklvekygfthlsaGdllreea 34
                G+ GsGK+t++++l+  +g  +l +G + r+  
  KIR61290.1 16 GPSGSGKSTVSRRLAVSLGARYLDTGAMYRAIT 48
                899************************999753 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.8
                 SEEEEEE--HHHHHHHHHHH CS
      AAA_17 103 daiilleadpeeilerrlkd 122
                 d+ ++l a++    +rr  +
  KIR61290.1 147 DLKVYLTASEAARAQRRSAE 166
                 55677888887777777554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   7.3e-06    0.0073       7      37 ..      11      41 ..       5      96 .. 0.73
   2 ?   -1.3   0.0       2.5   2.5e+03      45      97 ..     150     202 ..     113     223 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.3e-06
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeakaee 37
                +++v G+sG+GK+t+ rrl+ +l +++  + 
  KIR61290.1 11 VVAVDGPSGSGKSTVSRRLAVSLGARYLDTG 41
                6789***************999977766655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.5
      AAA_22  45 vtlpsstsskdllrellralglelka.erlsseell.ealeqalraraviellii 97 
                 v+l++s+  +  +r    a+++ + a   +++++l  ++ ++ l+++a+  ++++
  KIR61290.1 150 VYLTASEAARAQRRSAEDATDVAATAaDLARRDRLDsTRKADPLQQAAD--AVVL 202
                 4555555445445555555554444444444444444445555555544..4444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.4   3.4e-06    0.0034      18      52 ..       4      41 ..       1     129 [. 0.71
   2 ?   -0.2   3.5       1.2   1.2e+03      47     145 ..     124     206 ..     113     224 .. 0.42

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.4e-06
      AAA_16 18 rvrsgrpelvllsGesGvGKsslvrellralekd....g 52
                +vr+gr ++v + G+sG+GKs++ r+l+ +l ++    g
  KIR61290.1  4 NVRAGR-CVVAVDGPSGSGKSTVSRRLAVSLGARyldtG 41
                688999.79*******************99988855552 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.2
      AAA_16  47 alekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasrllellkrllallsrderplvlvlDdlq 145
                  + k+g+i+++g+   +           + a +  l+  l++   +e+++++++  e +++v++ a+++a+r +   +r ++ l++ ++   +vlD  +
  KIR61290.1 124 LIAKAGWIVVEGRDIGS-----------VVAPDADLKVYLTA---SEAARAQRRSAEDATDVAATAADLARRDRLDSTRKADPLQQAAD--AVVLDTTE 206
                 55555666666666666...........11112222222222...23344444444444444444444443333333344444444333..34444433 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.2e-05     0.022       2      33 ..      11      42 ..      10      68 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.2e-05
                CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaegklpqga 33
                +v++ G++GsGK+t  ++la+ + +++l+ ga
  KIR61290.1 11 VVAVDGPSGSGKSTVSRRLAVSLGARYLDTGA 42
                689**********************9999876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.3e-05     0.043       6      48 ..      16      59 ..      12      97 .. 0.78
   2 ?   -1.9   0.0       3.1   3.1e+03      65      92 ..     196     223 ..     157     225 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.3e-05
                --SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--. CS
       AAA_5  6 GppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreik 48
                Gp+G+gKs++++rla  l  r + + +++r +t + l+ +++++
  KIR61290.1 16 GPSGSGKSTVSRRLAVSLgARYLDTGAMYRAITWAVLRSGVDLT 59
                ******************55556678888888888888877774 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.1
                 G-SEEEEESGGG--HHHHHHHHHHHHSS CS
       AAA_5  65 egeilvlDEveraesevlnsLlslleer 92 
                  ++ +vlD  e   ++v+++L  ll er
  KIR61290.1 196 AADAVVLDTTELGIDQVVDRLRALLTER 223
                 5566677766666677777777777666 PP

>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.1e-05     0.041       3      46 ..      16      59 ..      14      75 .. 0.83
   2 ?   -2.8   0.0       6.2   6.2e+03      29      67 ..     177     215 ..     169     222 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.1e-05
                ESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHCT-HHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  3 GaPgaGKGtqaeklvkkyglahlstGdllRaevksgtelGkeak 46
                G+ g+GK t++++l+ ++g+  l tG + Ra + +  + G  + 
  KIR61290.1 16 GPSGSGKSTVSRRLAVSLGARYLDTGAMYRAITWAVLRSGVDLT 59
                999***************************98877766666655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.2
                 HHHHHHHHCT-HHHHHHHHHHHTTSS--HHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  29 dllRaevksgtelGkeakevmdkgelvpdevvvklvkee 67 
                 dl R +   +t++   ++++ d+  l + e+ ++ v ++
  KIR61290.1 177 DLARRDRLDSTRKADPLQQAADAVVLDTTELGIDQVVDR 215
                 666666666666665555555555555555544444444 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1    0.0002       0.2       2      26 ..      12      36 ..      11      42 .. 0.85
   2 ?   -1.4   0.0       2.3   2.3e+03      31      31 ..     142     142 ..      75     221 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
                EEEESSTTSSHHHHHHHHHHHHHHT CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  2 aiastkGGvGKTtlaanLaralarr 26
                +++ + +G+GK+t++  La++l  r
  KIR61290.1 12 VAVDGPSGSGKSTVSRRLAVSLGAR 36
                567788***************9875 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.3
                 E CS
                 x RF
        CbiA  31 l 31 
                 +
  KIR61290.1 142 V 142
                 1 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0002       0.2      24      38 ..      11      25 ..       3      26 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
      AAA_29 24 atlltGpsGsGKSTl 38
                ++ + GpsGsGKST+
  KIR61290.1 11 VVAVDGPSGSGKSTV 25
                56788*********6 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00034      0.33       6      37 ..      11      42 ..       6      50 .. 0.83
   2 ?   -0.5   0.0       0.7     7e+02      15      51 ..      64     104 ..      62     125 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00034
        ParA  6 iavlSgKGGVGKStvavnlAlaLakkglkvgl 37
                ++ + g  G GKStv+  lA++L ++ l++g 
  KIR61290.1 11 VVAVDGPSGSGKSTVSRRLAVSLGARYLDTGA 42
                555668889**************999888876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.7
        ParA  15 VGKStvavnlAlaLakkglkvg....llDaDiyGpsiprll 51 
                 VGK    v l +    +g++v      +Da i Gp +   +
  KIR61290.1  64 VGKVAAEVDLRIGTDPQGYAVTadgvTVDAEIRGPEVTGAV 104
                 77877777888888888888742222489999999987655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00037      0.37      13      32 ..      11      30 ..       2      58 .. 0.86
   2 ?   -1.7   0.0       3.8   3.8e+03      39      63 ..     128     152 ..     115     208 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00037
                EEEEEESTTSSHHHHHHHHT CS
                xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlklla 32
                +va+ G++G+GKSt+ + la
  KIR61290.1 11 VVAVDGPSGSGKSTVSRRLA 30
                57888*********987665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.8
                 EEEEEETTCEGGGB-HHHCCHCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  39 eGeilldgkdlkeqeleslrkeigv 63 
                 +G i ++g+d+ +   + ++ ++  
  KIR61290.1 128 AGWIVVEGRDIGSVVAPDADLKVYL 152
                 5555555555555222222222222 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00025      0.25       2      26 ..      13      37 ..      12      52 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
  RNA_helicase  2 wlyGpsgeGKStlakeLakallkkl 26
                   + Gpsg GKSt++++La +l  ++
    KIR61290.1 13 AVDGPSGSGKSTVSRRLAVSLGARY 37
                  578**************99998666 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00037      0.37      47      74 ..      11      38 ..       2      44 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00037
       Rad17 47 iLLisGPsGCgkstvvkvLskelgiklr 74
                ++ + GPsG gkstv + L+  lg ++ 
  KIR61290.1 11 VVAVDGPSGSGKSTVSRRLAVSLGARYL 38
                67789***************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 1558.06
//
Query:       KIR61291.1  [L=467]
Description: GTP-binding protein Der [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-49  167.2   0.1    2.7e-25   88.7   0.0    2.2  2  MMR_HSR1      50S ribosome-binding GTPase
    1.9e-24   86.0   0.0    2.6e-11   43.3   0.0    2.2  2  FeoB_N        Ferrous iron transport protein B
      3e-24   85.1   0.0    1.4e-23   83.0   0.0    2.0  2  KH_dom-like   KH-domain-like of EngA bacterial GTPase enzymes
    7.9e-16   58.2   0.0      5e-06   26.2   0.3    4.5  3  GTP_EFTU      Elongation factor Tu GTP binding domain
    4.2e-12   46.3   1.1      0.034   14.1   0.0    4.0  3  RsgA_GTPase   RsgA GTPase
    5.2e-12   46.1   0.3     0.0079   16.3   0.0    4.1  4  Dynamin_N     Dynamin family
    1.3e-11   44.2   0.0    1.8e-07   30.7   0.0    2.1  2  AIG1          AIG1 family
    5.2e-09   36.4   0.1     0.0066   16.7   0.0    3.2  2  Roc           Ras of Complex, Roc, domain of DAPkinase
    1.1e-08   34.9   0.0     0.0012   18.4   0.0    2.7  2  Ras           Ras family
    4.1e-07   30.5   0.6     0.0064   16.9   0.0    2.6  2  AAA_16        AAA ATPase domain
      6e-06   26.8   0.0       0.12   12.9   0.0    2.3  2  ABC_tran      ABC transporter
    3.7e-05   23.2   0.0      0.066   12.6   0.0    2.4  2  TniB          Bacterial TniB protein
    5.8e-05   22.9   0.0      0.019   14.7   0.0    3.1  2  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
    0.00021   20.8   0.0       0.95    8.9   0.0    2.9  2  SRPRB         Signal recognition particle receptor beta subun
    0.00031   20.4   0.1         11    5.6   0.0    3.9  5  cobW          CobW/HypB/UreG, nucleotide-binding domain
    0.00055   19.0   5.3       0.43    9.5   0.0    3.6  4  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
     0.0007   19.4   0.0       0.24   11.1   0.0    2.4  2  AAA_24        AAA domain
     0.0024   17.8   0.0        0.1   12.5   0.0    2.5  2  NTPase_1      NTPase
     0.0025   17.3   0.1        4.4    6.7   0.0    3.1  2  Arf           ADP-ribosylation factor family
     0.0027   17.9   0.2      0.036   14.2   0.1    2.4  2  AAA_33        AAA domain
     0.0059   16.5   0.0       0.27   11.1   0.0    2.3  2  ATPase_2      ATPase domain predominantly from Archaea
  ------ inclusion threshold ------
      0.011   16.0   0.0        3.8    7.8   0.0    2.8  2  AAA_22        AAA domain
      0.021   14.1   0.2       0.91    8.7   0.0    2.7  3  GBP           Guanylate-binding protein, N-terminal domain
      0.032   14.6   0.0        3.9    7.9   0.0    2.4  2  RNA_helicase  RNA helicase
      0.046   12.8   0.0          3    6.9   0.0    2.8  3  MCM           MCM P-loop domain
      0.078   12.7   0.0         14    5.5   0.0    2.5  2  AAA_29        P-loop containing region of AAA domain
       0.11   12.8   0.0         17    5.6   0.0    2.9  2  AAA_28        AAA domain
       0.13   11.5   0.0        1.5    7.9   0.0    2.2  2  NB-ARC        NB-ARC domain
       0.16   11.7   0.0         38    3.9   0.0    3.0  4  ATP_bind_1    Conserved hypothetical ATP binding protein
       0.19   11.8   0.0        3.1    7.8   0.0    2.2  2  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
       0.19   12.3   0.0         14    6.2   0.0    2.6  2  AAA_18        AAA domain
        1.1    9.0   3.0         14    5.5   2.1    2.9  2  NOG1          Nucleolar GTP-binding protein 1 (NOG1)


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.0   4.8e-28   2.7e-25       2     114 .]      27     141 ..      26     141 .. 0.87
   2 !   76.7   0.0   2.4e-24   1.3e-21       1     114 []     200     318 ..     200     318 .. 0.83

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 4.8e-28
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS.HHHHHH..HHHHHHHHHHCTSEEEEEEETTTTCSHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGlie.gaseek..glgkaflaleeadlillvvdaseeklkpldee 96 
                 va+vGrpNvGKStL+n+++g+ +a v+d+pg+Trd + +  +++g+ +++vDt G  e +a+++     ++a  a+  ad++l+vvda   + +++de 
  KIR61291.1  27 VAVVGRPNVGKSTLVNRIIGRrQAVVEDIPGVTRDRVPYDAQWSGRAFTVVDTGG-WEpDAKDRAaaIAAQAEIAVATADVVLFVVDAM-VGSTDVDEA 123
                 89******************967999*****************************.76445444444556666667779********88.458899999 PP

                 HHHHHHHTTSEEEEEEES CS
    MMR_HSR1  97 leelleeakkplilvlnk 114
                   ++l+++ kp+ilv+nk
  KIR61291.1 124 AVKMLRRSAKPVILVANK 141
                 *****************8 PP

  == domain 2  score: 76.7 bits;  conditional E-value: 2.4e-24
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS...HHHHHH..HHHHHHHHHHCTSEEEEEEETTTTCSHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGlie...gaseek..glgkaflaleeadlillvvdaseeklkpl 93 
                 +va+vGrpNvGKS+L+n+ +ge +a v + +gtT d++   v+++g+ ++lvDt+Gl +   +as  +     ++  a+e a+++++++d+s e ++++
  KIR61291.1 200 RVALVGRPNVGKSSLLNRFSGEeRAVVDSVAGTTVDPVDSLVEIGGETWQLVDTAGLRKrvgKASGTEyyASLRTAGAIEAAEVAVVLLDSS-EPISEQ 297
                 69*******************989********************************53333222222223333333336669********77.99**** PP

                 HHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  94 deeleelleeakkplilvlnk 114
                 d+++ ++ +ea++ l++++nk
  KIR61291.1 298 DQRILSMVTEAGRALVIAFNK 318
                 *******************98 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   2.5e-13   1.4e-10       3     118 ..      27     145 ..      25     180 .. 0.77
   2 !   43.3   0.0   4.6e-14   2.6e-11       2     152 ..     200     360 ..     199     364 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 2.5e-13
                 EEEEESTTSSHHHHHHHHHTTSEEE.EESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHHHH..HHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkv.gNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatnlernL..yLt 98 
                 va+vG pnvGk+tl+n++ g +q v    pGvt ++     +++g+ +++vD  G     +       a+  ++  ++dvv+ vvda+    ++    +
  KIR61291.1  27 VAVVGRPNVGKSTLVNRIIGRRQAVvEDIPGVTRDRVPYDAQWSGRAFTVVDTGGWEPDAKDRAAAIAAQAEIAVATADVVLFVVDAMVGSTDVdeAAV 125
                 89*******************99862689***********************98865545555555556677999************977666621333 PP

                 HHHHHTTSSEEEEEETHHHH CS
      FeoB_N  99 lqllelgvpvvlalnmidea 118
                   l    +pv+l+ n+ d+ 
  KIR61291.1 126 KMLRRSAKPVILVANKADNT 145
                 44555667788888877764 PP

  == domain 2  score: 43.3 bits;  conditional E-value: 4.6e-14
                 EEEEEESTTSSHHHHHHHHHTTSEEE.EESTTSSSEEEEEEEEETTEEEEEEE----SS.SSSSSHHHHHHHHHHH..CTSSSEEEEEEEGGGH..HHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkv.gNwpGvtvekkegklklkgkeveivDlPGiYs.lsayseeekvardfll..eeepdvvvnvvdatnl..ern 94 
                 +valvG pnvGk++l+n+ +g +  v    +G+tv+     +++ g++ ++vD  G  + + + s  e  a    +   e ++v v ++d+++   e++
  KIR61291.1 200 RVALVGRPNVGKSSLLNRFSGEERAVvDSVAGTTVDPVDSLVEIGGETWQLVDTAGLRKrVGKASGTEYYASLRTAgaIEAAEVAVVLLDSSEPisEQD 298
                 69*******************987651679**************************97526788888887754443227899999*****998434889 PP

                 HHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT.S-E...EEEBTTTTBTHHHH CS
      FeoB_N  95 LyLtlqllelgvpvvlalnmideaekkgieidlkkLsekLg.vpv...vktsakkkegieel 152
                   ++  ++e g  +v+a+n++d ++ ++     k+++++L  +p    +++sak+++ +++l
  KIR61291.1 299 QRILSMVTEAGRALVIAFNKWDLVDGDRRYYLDKEIERELRrIPWalrINLSAKTGRAVDKL 360
                 999999******************98877777777777775344322366777777777766 PP

>> KH_dom-like  KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0         4   2.3e+03      42      68 ..     312     338 ..     302     348 .. 0.85
   2 !   83.0   0.0   2.5e-26   1.4e-23       1      80 []     374     452 ..     374     452 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 4
                  EEEEECSCCCS-HHHHHHHHHHHHHHC CS
  KH_dom-like  42 fvlfvndpelvkesykryLenqlreaf 68 
                  +v+  n+ +lv+ + + yL +++ +++
   KIR61291.1 312 LVIAFNKWDLVDGDRRYYLDKEIEREL 338
                  578889999999999*****9998876 PP

  == domain 2  score: 83.0 bits;  conditional E-value: 2.5e-26
                  ---HHHHHHHHHHHHCCS--SET.TCC-EEEEEEEEETTTTEEEEEECSCCCS-HHHHHHHHHHHHHHCT-TTS--EEEEE CS
  KH_dom-like   1 RistseLnrvleeavekhpppvk.gkrlkiyyatqvgtrpptfvlfvndpelvkesykryLenqlreafgfegtPirlkfR 80 
                  R++t++Ln++l  +v+++p+pv+ g+ +ki +atq+g++pp+fvlf++    ++  y+r++e++lre+fgfeg+P+++++R
   KIR61291.1 374 RVPTAQLNSWLTALVQATPHPVRgGRAPKILFATQAGVAPPRFVLFTTA--PLDAGYQRFVERKLREEFGFEGSPVEISVR 452
                  9********************9989999********************7..79*************************998 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.3     9e-09     5e-06       7     141 ..      28     151 ..      23     186 .. 0.78
   2 ?   -1.0   0.0         2   1.1e+03       4      23 ..     199     218 ..     198     235 .. 0.85
   3 !   21.0   0.0   3.6e-07    0.0002      81     154 ..     267     353 ..     262     438 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 9e-09
                 EEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHH........HHT-SEE CS
    GTP_EFTU   7 giighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirg........lrvlDga 97 
                 +++g  + GK+TL+ r++ + +                 +  E   g+T +      +  ++ + ++++Dt G +   k+  ++        ++++D++
  KIR61291.1  28 AVVGRPNVGKSTLVNRIIGRRQ-----------------AVVEDIPGVTRDRVPYDAQ--WSGRAFTVVDTGGWEPDAKDRAAAiaaqaeiaVATADVV 107
                 5666666666666666662111.................2234556777777777777..9************99888888777655666667899*** PP

                 EEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHH CS
    GTP_EFTU  98 vlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelke 141
                 ++vvda+ G +   e  ++++++   p+i++ NK+D++  e++ 
  KIR61291.1 108 LFVVDAMVGSTDVDEAAVKMLRRSAKPVILVANKADNTTIEMES 151
                 ************************************99766654 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2
                 EEEEEEESTTSSHHHHHHHH CS
    GTP_EFTU   4 rnigiighvDhGKtTLtdrL 23 
                 r ++++g  + GK++L+ r 
  KIR61291.1 199 RRVALVGRPNVGKSSLLNRF 218
                 67899999********9875 PP

  == domain 3  score: 21.0 bits;  conditional E-value: 3.6e-07
                 GGGHHHHHHH.HHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHH...........H CS
    GTP_EFTU  81 vdFskevirg.lrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrl.kaelkeiveevkqklsrk...........e 154
                 + + +  ++g ++++++av+++d++e + +q +++l ++ + g  ++++ NK D + +++   + +e++++l+r            +
  KIR61291.1 267 EYYASLRTAGaIEAAEVAVVLLDSSEPISEQDQRILSMVTEAGRALVIAFNKWDLVdGDRRYYLDKEIERELRRIpwalrinlsakT 353
                 55666666655899******************************************8677777788888888554444444444440 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   9.4e-05     0.053     101     130 ..      26      55 ..      21      61 .. 0.88
   2 !   13.4   0.4   9.3e-05     0.052     100     131 ..     199     230 ..      86     258 .. 0.81
   3 !   14.1   0.0     6e-05     0.034      25     100 ..     288     367 ..     272     370 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.4e-05
                  EEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktgev 130
                  ++++vG   vGKStL+n+++++ ++ ++++
   KIR61291.1  26 VVAVVGRPNVGKSTLVNRIIGRRQAVVEDI 55 
                  57899****************999888877 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 9.3e-05
                  SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevs 131
                  + ++lvG   vGKS+L+n++ +e+++ + +v 
   KIR61291.1 199 RRVALVGRPNVGKSSLLNRFSGEERAVVDSVA 230
                  6789******************9988887775 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 6e-05
                  STTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH...HHHHHHHHHHHTTSEE.EE--TTTHTTHHHHHHHCTTS CS
  RsgA_GTPase  25 lkepelslnlldrfLvlaeekgiepvivlnKiDlleeee...eleelkeelealgyev.llvsaktkegleelkellkdk 100
                  l++ e  +++ +r+L ++ e+g  +vi++nK Dl++ ++     +e++ el+++  ++ + +sakt++++++l++ l++ 
   KIR61291.1 288 LDSSEPISEQDQRILSMVTEAGRALVIAFNKWDLVDGDRryyLDKEIERELRRIPWALrINLSAKTGRAVDKLAPSLRKA 367
                  444555566779************************9996654577888888888766357999**********999875 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.4e-05    0.0079       1      30 [.      27      56 ..      27      64 .. 0.87
   2 !    8.0   0.0    0.0048       2.7      98     167 ..      69     141 ..      62     142 .. 0.76
   3 !   13.4   0.0    0.0001     0.058       1      32 [.     201     232 ..     201     238 .. 0.84
   4 ?    3.6   0.0      0.11        61     102     151 ..     247     303 ..     240     318 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.4e-05
                EEEEEBTTTTHHHHHHHHHTS--S---SSS CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnp 30
                +avvG  + GKS+++n ++g++  +++ +p
  KIR61291.1 27 VAVVGRPNVGKSTLVNRIIGRRQAVVEDIP 56
                89*******************988887775 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0048
                 TTS-SEEEEE---B-SSSGTTS...HHHHHHH.STTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N  98 llvkgltlvDlPGldsvnkrdq...elvkeyi.kkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                 +     t+vD+ G    +k +    +   e++   ad++l+v++a +  +++  +   ++++   k +i v +k
  KIR61291.1  69 WSGRAFTVVDTGGWEPDAKDRAaaiAAQAEIAvATADVVLFVVDAMVGSTDV-DEAAVKMLRRSAKPVILVANK 141
                 556678999**99999888888777444445559************976655.456677888888888888887 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 0.0001
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS-- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptT 32 
                 +a+vG  + GKSS+ln   ge+  ++++   T
  KIR61291.1 201 VALVGRPNVGKSSLLNRFSGEERAVVDSVAGT 232
                 799******************98877766444 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.11
                 SEEEEE---B-SSSGTTS.......HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHH CS
   Dynamin_N 102 gltlvDlPGldsvnkrdq.......elvkeyikkadiilavtsanhdlsnsealfla 151
                 +  lvD+ Gl ++  +           +  +i+ a + +++++++  +s+++++ l+
  KIR61291.1 247 TWQLVDTAGLRKRVGKASgteyyasLRTAGAIEAAEVAVVLLDSSEPISEQDQRILS 303
                 5689********77777788999966677778*****************99988775 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   3.3e-10   1.8e-07       4     109 ..      28     130 ..      26     137 .. 0.88
   2 !   11.4   0.0   0.00025      0.14       2     123 ..     200     316 ..     199     345 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 3.3e-10
                 EEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHHHHHHHHHHCTT-ESEEEEEEETT.B-SHHHH CS
        AIG1   4 vlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllvlslg.rfteede 101
                  +vG+  +GkS+ +N i+g+++   +    +vt+    + ++w+g+   V+DT g    + +a++    i    +++    +++l+v+++    t+ de
  KIR61291.1  28 AVVGRPNVGKSTLVNRIIGRRQAVVE-DIPGVTRDRVPYDAQWSGRAFTVVDTGGW---EPDAKDRAAAIAAQAEIAVATADVVLFVVDAMvGSTDVDE 122
                 58*******************99999.799***********************995...4555555556777778899999*******99989999*** PP

                 HHHHHHHH CS
        AIG1 102 kalktlke 109
                 +a+k+l++
  KIR61291.1 123 AAVKMLRR 130
                 ***99986 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00025
                 EEEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTC..CHHCHHHHHHHHHHHCTT-ESEEEEEEETTB-SH CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsv..sadkiskeivrclllseegihalllvlslgrfte 98 
                 ++ lvG+  +GkS+  N   g++      s ++ t  +  +  +  g++ + +DT gl       s  + + +      + +  + ++ll+ s + ++e
  KIR61291.1 200 RVALVGRPNVGKSSLLNRFSGEERAVVD-SVAGTTVDPVDSLVEIGGETWQLVDTAGLRKRVGkaSGTEYYASLRTAGAIEAAEVAVVLLD-SSEPISE 296
                 789****************999987766.4678888888888899*************665431145555555555555555555555555.56799** PP

                 HHHHHHHHHHHHHCGGGGGGEEEEE CS
        AIG1  99 edekalktlkelFGekilkylivvf 123
                 +d+ +l++++e+      + l++ f
  KIR61291.1 297 QDQRILSMVTEA-----GRALVIAF 316
                 ******999864.....34455555 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.7e-05    0.0093       2     119 ..      27     143 ..      26     144 .. 0.57
   2 !   16.7   0.0   1.2e-05    0.0066       1      65 [.     200     255 ..     200     321 .. 0.50

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.7e-05
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGG.....CTTT...T-HHHHCTSCEEEEEEEGHH. CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqe.....rfrs...lhplylreaalailvydsrs. 91 
                 v +vG  +vGK++l++r++ ++ +   + + gv+  +        ++ +++     + + Dt+G e     r  +    +++ +  a+++++v+d+   
  KIR61291.1  27 VAVVGRPNVGKSTLVNRII-GRRQAVVEDIPGVTRDRVP------YDAQWSG--RAFTVVDTGGWEpdakdRAAAiaaQAEIAVATADVVLFVVDAMVg 116
                 679****************.5556666777888754432......2334444..468888999966211113222111234445555555566664431 PP

                 HHCHHHHHHHHHHH.CSSS-EEEEEE-TT CS
         Roc  92 senlkeWlkelkkv.agkspvilvgnkiD 119
                 s++++e    +k   ++ +pvilv+nk+D
  KIR61291.1 117 STDVDE--AAVKMLrRSAKPVILVANKAD 143
                 334433..333333134579*******99 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.2e-05
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEE.CGGSGGCTTBTTTTCEEEEEEEE-S CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltke.vtkikgvendkkvkkvklniWDtaG 65 
                 +v lvG  +vGK+sll+rf  ++     +s  g ++   + +++i g          + ++ DtaG
  KIR61291.1 200 RVALVGRPNVGKSSLLNRFSGEERAV-VDSVAGTTVDPVDsLVEIGGE---------TWQLVDTAG 255
                 589****************9877643.344455444332202233331.........234444444 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   7.4e-05     0.041       2     117 ..      27     145 ..      26     165 .. 0.70
   2 !   18.4   0.0   2.2e-06    0.0012       2     150 ..     201     358 ..     200     369 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.4e-05
                 EEEEESTTSSHHHHHHHHHHSS.CSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSG.....GGHHHH.HHHHTTESEEEEEEETTBHHHHHTHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdk.FkeeyesTigvdfytkeievdgkevkleiwDTAGqe.....efkslr.elyyrdaegillvyditsresfenvkkw 93 
                 + +vG  +vGK++l++r +  +    e ++ +  d    + + +g+   +++ DT G e     +  +++ ++ +  a++ ++++ ++     ++v++ 
  KIR61291.1  27 VAVVGRPNVGKSTLVNRIIGRRqAVVEDIPGVTRDRVPYDAQWSGR--AFTVVDTGGWEpdakdRAAAIAaQAEIAVATADVVLFVVDAMVGSTDVDEA 123
                 579**************99654044555666655555555555555..6889*****873222133344313344556666899999999999999966 PP

                 HHHHHHHSTTTSEEEEEEETTTGG CS
         Ras  94 veeikrvaeenvpivLvGnKvDle 117
                   ++ r   +  p++Lv+nK+D +
  KIR61291.1 124 AVKMLRRSAK--PVILVANKADNT 145
                 6666665554..9********976 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 2.2e-06
                 EEEEESTTSSHHHHHHHHHHSS..CSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETT..........SGGGHHHHHH.HHTTESEEEEEEETTBHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdk..FkeeyesTigvdfytkeievdgkevkleiwDTAG..........qeefkslrel.yyrdaegillvyditsresf 87 
                 + lvG  +vGK+sll+rf  ++    ++   T  vd   + +e+ g++   ++ DTAG           e + slr++  ++ ae+++++ d ++  s 
  KIR61291.1 201 VALVGRPNVGKSSLLNRFSGEEraVVDSVAGTT-VDPVDSLVEIGGETW--QLVDTAGlrkrvgkasgTEYYASLRTAgAIEAAEVAVVLLDSSEPIS- 295
                 789***************966522566677777.899999999999976..67899973222222222556666665413344445555444333333. PP

                 HTHHHHHHHHHHHST.TTSEEEEEEETTTGGG..G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHH CS
         Ras  88 envkkwveeikrvae.envpivLvGnKvDlee..kravsteegeelakelg.lkfletSAktnenve 150
                     +  + i ++++    ++v+  nK Dl +  +r    +e e+  +++  +  ++ SAkt   v+
  KIR61291.1 296 ----EQDQRILSMVTeAGRALVIAFNKWDLVDgdRRYYLDKEIERELRRIPwALRINLSAKTGRAVD 358
                 ....222222222221333566667777777655333333333333333333555666666666665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.2e-05    0.0064      24     140 ..      23     138 ..      14     191 .. 0.58
   2 !   12.0   0.2   0.00035       0.2      22     142 ..     193     317 ..     171     388 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.2e-05
      AAA_16  24 p.elvllsGesGvGKsslvrellralekdggif..lrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala............ 106
                 p ++v ++G + vGKs+lv+++     ++ +++  + g +++    +py+a +   + + +++   + e+++++++a+ ++  e +a            
  KIR61291.1  23 PvPVVAVVGRPNVGKSTLVNRII---GRRQAVVedIPGVTRDR---VPYDAqWSGRA-F-TVVDTGGWEPDAKDRAAAIAAQAE-IAvatadvvlfvvd 112
                 3699***************8887...455577778********...***77566655.3.555555555444333332222222.12234466666444 PP

      AAA_16 107 ....................avpelagaeasrllellkrllallsrderplvlv 140
                                                                  p++lv
  KIR61291.1 113 amvgstdvdeaavkmlrrsaK----------------------------PVILV 138
                 444444444444444444440............................44444 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00035
      AAA_16  22 grp...elvllsGesGvGKsslvrellralekdggif..lrgkcdql.esaipysa.laqalareellrqlldeaesaeleawrekleealaavpelag 113
                 +rp   + v l+G + vGKssl++++     ++++++  ++g++++  +s ++     +q+ ++ +l + ++ ++ +   +  r++   ++a+v+ +  
  KIR61291.1 193 NRPrgpRRVALVGRPNVGKSSLLNRFSG---EERAVVdsVAGTTVDPvDSLVEIGGeTWQLVDTAGLRKRVGKASGTEYYASLRTAGAIEAAEVAVVLL 288
                 44444599****************9994...44566666666666653444555555666666666666666664444444444444444444444444 PP

      AAA_16 114 aeasrllellkrll.allsrderplvlvlD 142
                 ++++ + e+ +r+l + ++  +r lv+ + 
  KIR61291.1 289 DSSEPISEQDQRILsMVTEA-GRALVIAFN 317
                 44466666666666333333.555666555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00046      0.26      13      42 ..      26      55 ..      22     131 .. 0.84
   2 !   12.9   0.0   0.00022      0.12      13      43 ..     200     242 ..     196     311 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00046
                EEEEEESTTSSHHHHHHHHTTSS--SEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkpteGei 42
                +va+vG+   GKStL++ ++g  +   ++i
  KIR61291.1 26 VVAVVGRPNVGKSTLVNRIIGRRQAVVEDI 55
                79*******************998866665 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00022
                 EEEEEESTTSSHHHHHHHHTTSS--SEEEE............E CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............x RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpteGei............l 43 
                 +va+vG+   GKS+Ll+ ++g+++   +++            +
  KIR61291.1 200 RVALVGRPNVGKSSLLNRFSGEERAVVDSVagttvdpvdslvE 242
                 89********************999777774444444444443 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0029       1.6      35      58 ..      24      47 ..      16      64 .. 0.82
   2 !   12.6   0.0   0.00012     0.066      32      62 ..     194     225 ..     175     239 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0029
        TniB 35 mpnlllvGdsnnGKtmivekFarl 58
                +p + +vG++n+GK+++v++   +
  KIR61291.1 24 VPVVAVVGRPNVGKSTLVNRIIGR 47
                57899**************97644 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00012
        TniB  32 rkrm.pnlllvGdsnnGKtmivekFarlhppe 62 
                 r r  + + lvG++n+GK++++++F+ ++++ 
  KIR61291.1 194 RPRGpRRVALVGRPNVGKSSLLNRFSGEERAV 225
                 333225899****************9776654 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.4e-05     0.019      58     141 ..      98     180 ..      25     182 .. 0.72
   2 ?    3.8   0.0     0.081        45       2      25 ..     199     222 ..     198     229 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.4e-05
   PduV-EutP  58 ivtsaeadvialvqdateeesvfppgfasvfnkeviGiitkidlaedeenieaveelLksaGaekifevsavekegieellkyl 141
                  ++ a adv+ +v+da   ++   ++ ++++++    +i  +++a d+  ie+  + L s G  +   vsa++  g  +ll+ +
  KIR61291.1  98 EIAVATADVVLFVVDAMVGSTDVDEAAVKMLRRSAKPVILVANKA-DNTTIEMESTSLWSLGLGEPHPVSALHGRGSGDLLDRI 180
                 345689************************998887777777777.778*************************9998887765 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.081
   PduV-EutP   2 kkilliGkvgsGKttLtqalkgee 25 
                 +++ l+G+ ++GK +L ++++gee
  KIR61291.1 199 RRVALVGRPNVGKSSLLNRFSGEE 222
                 6899***************99986 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0017      0.95       4      96 ..      25     124 ..      23     151 .. 0.66
   2 !    8.0   0.0     0.003       1.7       4      61 ..     199     258 ..     197     360 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0017
                 -EEEEE-STTSSHHHHHHHHHHS..S---B---S.S-EEETTG...GGTT-SEEEETT-G.....CCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHH CS
       SRPRB   4 pavllvGlsdsGKTslftrLttd..svkktvtSq.essaalkvksekgskltliDfPGhe.....klrqklleklkaksslkglvfvvDStidpkevke 94 
                 p v +vG  + GK +l +r+     +v +    +    + ++  +  g  +t++D  G e     + +    +  +a +++  ++fvvD+ + + +v e
  KIR61291.1  25 PVVAVVGRPNVGKSTLVNRIIGRrqAVVEDIPGVtRDRVPYDA-QWSGRAFTVVDTGGWEpdakdRAAAIAAQAEIAVATADVVLFVVDAMVGSTDVDE 122
                 67889**************986533333333333344444444.7899********9976222102222333444555667889*********999998 PP

                 HH CS
       SRPRB  95 vA 96 
                  A
  KIR61291.1 123 AA 124
                 87 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.003
                 -EEEEE-STTSSHHHHHHHHHHS..S---B---SS-EEETTG...GGTT-SEEEETT-GC CS
       SRPRB   4 pavllvGlsdsGKTslftrLttd..svkktvtSqessaalkvksekgskltliDfPGhek 61 
                 ++v lvG  + GK sl++r + +  +v ++v+      ++++ +  g++++l+D  G  k
  KIR61291.1 199 RRVALVGRPNVGKSSLLNRFSGEerAVVDSVAGTTVDPVDSLVEIGGETWQLVDTAGLRK 258
                 57899**************99775566677776666666666778899999999988665 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0      0.02        11       1      25 [.      25      49 ..      25      62 .. 0.83
   2 ?    5.5   0.2      0.02        11     103     156 ..      95     148 ..      72     156 .. 0.71
   3 ?   -2.1   0.0       4.4   2.5e+03       5      21 ..     203     219 ..     201     227 .. 0.78
   4 ?    3.8   0.0     0.067        38     112     158 ..     281     327 ..     260     345 .. 0.75
   5 ?   -3.3   0.0        10   5.6e+03      81     106 ..     399     424 ..     379     429 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.02
                EEEEEEESTTCCHHHHHHHHHCT-- CS
        cobW  1 pvtvltGflGsGKTtLlnhllenra 25
                pv+ ++G +  GK+tL+n+++ +r+
  KIR61291.1 25 PVVAVVGRPNVGKSTLVNRIIGRRQ 49
                689999***************4432 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.02
                 SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC CS
        cobW 103 eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldee 156
                 ++   + +t+d+v++vvDa   +++ ++ + k+ +  a+  +lv nK+D  + e
  KIR61291.1  95 AQAEIAVATADVVLFVVDAMVGSTDVDEAAVKMLRRSAKPVILVANKADNTTIE 148
                 4444557899*********66677777777777777777889999***987655 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 4.4
                 EEESTTCCHHHHHHHHH CS
        cobW   5 ltGflGsGKTtLlnhll 21 
                 l+G +  GK++Lln+  
  KIR61291.1 203 LVGRPNVGKSSLLNRFS 219
                 7788889******9875 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.067
                 ECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC.. CS
        cobW 112 ldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldeeal 158
                 +++ v+++D+++  +e+++    +  +   a ++ +nK+Dl+d ++ 
  KIR61291.1 281 AEVAVVLLDSSEPISEQDQRILSMVTEAGRALVIAFNKWDLVDGDRR 327
                 55677888888877788888888888888999999*******98754 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 10
                 TT-SEEEEEECTTTTHHHHHTTSHHH CS
        cobW  81 erldviliEttGlaePapvafteeel 106
                 + + +++  + G+a P +v+ft+  l
  KIR61291.1 399 RAPKILFATQAGVAPPRFVLFTTAPL 424
                 55778888899999999998876554 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00076      0.43      25      50 ..      20      45 ..      14      53 .. 0.88
   2 ?   -1.7   0.1       2.1   1.2e+03     171     187 ..     136     152 ..      94     159 .. 0.53
   3 !    9.3   0.1   0.00088      0.49      30      69 ..     199     238 ..     183     252 .. 0.89
   4 ?   -0.4   0.0      0.81   4.5e+02      23      33 ..     305     315 ..     272     373 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00076
                G-S-SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB 25 kaGraqvvGltGvPGaGkstlvealg 50
                 +G   vv + G P +Gkstlv++++
  KIR61291.1 20 PTGPVPVVAVVGRPNVGKSTLVNRII 45
                5788899****************987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.1
                 EEEEE---HHHHHHHHH CS
        MeaB 171 iivvnkaDkkeaekaar 187
                 i+v nkaD++ +e  ++
  KIR61291.1 136 ILVANKADNTTIEMEST 152
                 77889999887776555 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00088
                 EEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE---- CS
        MeaB  30 qvvGltGvPGaGkstlvealglelrrrGkrvavlavDPss 69 
                 ++v l G P +Gks l++++  e r+    va   vDP  
  KIR61291.1 199 RRVALVGRPNVGKSSLLNRFSGEERAVVDSVAGTTVDPVD 238
                 6899*********************************964 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.81
                 GGG-S-SEEEE CS
        MeaB  23 lakaGraqvvG 33 
                 +++aGra v+ 
  KIR61291.1 305 VTEAGRALVIA 315
                 33444444443 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.017       9.5       5      24 ..      27      47 ..      25      69 .. 0.84
   2 !   11.1   0.0   0.00043      0.24       3      44 ..     199     241 ..     197     296 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.017
      AAA_24  5 iliyGpsgiGKTtlakel.gp 24
                ++++G + +GK+tl++++ g 
  KIR61291.1 27 VAVVGRPNVGKSTLVNRIiGR 47
                899************998644 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00043
      AAA_24   3 lkiliyGpsgiGKTtlakel.gpkplfidtekGlksldadkfp 44 
                 ++++++G + +GK++l++++ g++ +++d  +G+    +d ++
  KIR61291.1 199 RRVALVGRPNVGKSSLLNRFsGEERAVVDSVAGTTVDPVDSLV 241
                 689******************9999999988888655555555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00018       0.1       2      59 ..      27      84 ..      26     138 .. 0.77
   2 ?    2.7   0.0      0.19   1.1e+02       1      20 [.     200     219 ..     200     238 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00018
                EEEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE-------EEEEEET.T--EEE CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkssgvkvgGfyteevreggrrigFkivdlasgeegi 59
                v++ G+p vGK+Tlv++++   +     + G+   +v  + + +g   + +++g  ++
  KIR61291.1 27 VAVVGRPNVGKSTLVNRIIGRRQAVVEDIPGVTRDRVPYDAQWSGRAFTVVDTGGWEP 84
                7899***************999888888999999999877777776555555565555 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.19
                 EEEEE--TTSSHHHHHHHHH CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvl 20 
                 +v++ G+p vGK+ l+++ +
  KIR61291.1 200 RVALVGRPNVGKSSLLNRFS 219
                 58899**********99876 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0081       4.5      19     130 ..      29     147 ..      26     182 .. 0.66
   2 !    6.7   0.0    0.0079       4.4      16     138 ..     200     332 ..     194     366 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0081
                 EEESTTSSHHHHHHHHHHSSCEECSSSSSEEEEEEEE....TTEEEEEEEE-SSG........GGGGGGGGGCTTESEEEEEEETT-CT.THHHHHHHH CS
         Arf  19 llGLDnaGKtTilkklkleelvttvPTigfnveelei....knlkftvwDvGGqe........klRplWknYfektdavifvvDsadre.RleeakeeL 104
                 ++G  n GK+T+++++   +++ +    g + +++ +     +  ftv D GG e         +    +   ++ d+v+fvvD++  +  ++ea    
  KIR61291.1  29 VVGRPNVGKSTLVNRIIGRRQAVVEDIPGVTRDRVPYdaqwSGRAFTVVDTGGWEpdakdraaAIAAQAEIAVATADVVLFVVDAMVGStDVDEA---A 124
                 6888899********98887777666667777777665555788999999999542221111122233344556678888999987543134444...3 PP

                 HHHCTSGCCTTSEEEEEEE-TTSTTS CS
         Arf 105 kalleeeelkevallvlaNKqDlpea 130
                  ++l+++     +++++aNK D ++ 
  KIR61291.1 125 VKMLRRS---AKPVILVANKADNTTI 147
                 4555554...4577888888887665 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0079
                 EEEEEESTTSSHHHHHHHHHHSSCEECSSSSSEEEEEEEE....TTEEEEEEEE-SSGG.G.GGGGGGGCTT..ESEE.......EEEEETT-CTTHHH CS
         Arf  16 rilllGLDnaGKtTilkklkleelvttvPTigfnveelei....knlkftvwDvGGqek.l.RplWknYfek..tdav.......ifvvDsadreRlee 99 
                 r+ l+G  n GK+ +l++++ ee + +    g +v+ +       + + ++ D  G +k + +    +Y+++  t +        + ++Ds  +e ++e
  KIR61291.1 200 RVALVGRPNVGKSSLLNRFSGEERAVVDSVAGTTVDPVDSlveiGGETWQLVDTAGLRKrVgKASGTEYYASlrTAGAieaaevaVVLLDS--SEPISE 296
                 78899999************99998887777777776543211166666666666643312244566777652222221111111333333..344566 PP

                 HHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHH CS
         Arf 100 akeeLkalleeeelkevallvlaNKqDlpealseeelre 138
                   + + ++++e   +  al++  NK Dl +   +  l +
  KIR61291.1 297 QDQRILSMVTE---AGRALVIAFNKWDLVDGDRRYYLDK 332
                 55555555544...5566778888888877665555555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   6.4e-05     0.036       1     112 [.      26     148 ..      26     151 .. 0.71
   2 ?    1.1   0.0       0.7   3.9e+02       2      26 ..     201     225 ..     201     312 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.4e-05
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdtlrrrlfg.tdqqskt.........dytrvldrlyqilnelarkalsagrnvil..datnlsrrerar 87 
                 +v +vG p +GKstl+ r++ +++av+ + + + r  ++ + q s +         + ++++dr+ +i  + a++a + +  v++  da   s +  ++
  KIR61291.1  26 VVAVVGRPNVGKSTLVNRIIGRRQAVVEDIPGVTRDRVPyDAQWSGRaftvvdtggWEPDAKDRAAAIA-AQAEIAVATADVVLFvvDAMVGSTDVDEA 123
                 7999*******************9999888887774444233334444444444448888888887765.66655554444333352555555566679 PP

      AAA_33  88 flklarrlgvpvrivvvetdeetlk 112
                  +k++rr   pv +v+ ++d+ t++
  KIR61291.1 124 AVKMLRRSAKPVILVANKADNTTIE 148
                 9999999999999999999999986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.7
      AAA_33   2 vllvGlpGsGKstlaerllkklgav 26 
                 v lvG p +GKs l+ r   ++ av
  KIR61291.1 201 VALVGRPNVGKSSLLNRFSGEERAV 225
                 56899999*****999987766654 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00048      0.27      18      47 ..      22      51 ..      19     149 .. 0.72
   2 ?    3.0   0.0      0.15        84      18      41 ..     197     219 ..     183     230 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00048
    ATPase_2 18 epneiyfiYGpegsGKtaLlkeiienledk 47
                +p +++ + G+ ++GK++L+++ii +++  
  KIR61291.1 22 GPVPVVAVVGRPNVGKSTLVNRIIGRRQAV 51
                6778999*****************999754 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.15
    ATPase_2  18 epneiyfiYGpegsGKtaLlkeii 41 
                 +p+++ ++ G+ ++GK++Ll+++ 
  KIR61291.1 197 GPRRVALV-GRPNVGKSSLLNRFS 219
                 55555554.9**********9985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0067       3.8       8      31 ..      27      50 ..      25     114 .. 0.85
   2 ?    5.3   0.0     0.038        21       8      28 ..     201     221 ..     195     308 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0067
      AAA_22  8 lvvtGesGtGKTtllrrlleqlde 31
                ++v+G + +GK+tl++r+  + ++
  KIR61291.1 27 VAVVGRPNVGKSTLVNRIIGRRQA 50
                689**************9877654 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.038
      AAA_22   8 lvvtGesGtGKTtllrrlleq 28 
                 ++++G + +GK+ ll+r+  +
  KIR61291.1 201 VALVGRPNVGKSSLLNRFSGE 221
                 689**************9766 PP

>> GBP  Guanylate-binding protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0016      0.91      18      46 ..      21      49 ..      14     113 .. 0.89
   2 ?   -2.8   0.0       5.5   3.1e+03       5      25 ..     119     139 ..     115     139 .. 0.89
   3 ?    2.5   0.0      0.13        72      24      44 ..     201     252 ..     181     318 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0016
                TSBEEEEEEEEBTTSSHHHHHHHHHTBSS CS
         GBP 18 dqkvvvvaivGlyRkGksfLlnklarkkk 46
                + +v vva+vG    Gks L+n+++++++
  KIR61291.1 21 TGPVPVVAVVGRPNVGKSTLVNRIIGRRQ 49
                67899*******************99875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.5
                 EE-HHHHHHHCTTTSBEEEEE CS
         GBP   5 elneealeileaidqkvvvva 25 
                  ++e+a+++l+  +++v+ va
  KIR61291.1 119 DVDEAAVKMLRRSAKPVILVA 139
                 6899*************9997 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.13
                 EEEEEBTTSSHHHHHHHHHT...............................B CS
         GBP  24 vaivGlyRkGksfLlnklar...............................k 44 
                 va+vG    Gks Lln++ +                                
  KIR61291.1 201 VALVGRPNVGKSSLLNRFSGeeravvdsvagttvdpvdslveiggetwqlvD 252
                 8999999999999999999855555555555555555555555555555444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0     0.007       3.9       2      20 ..      28      46 ..      27      71 .. 0.84
   2 ?    4.3   0.0     0.093        52       2      18 ..     202     218 ..     201     229 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.007
  RNA_helicase  2 wlyGpsgeGKStlakeLak 20
                   ++G++++GKStl+++++ 
    KIR61291.1 28 AVVGRPNVGKSTLVNRIIG 46
                  689************9875 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.093
  RNA_helicase   2 wlyGpsgeGKStlakeL 18 
                    l+G++++GKS+l +++
    KIR61291.1 202 ALVGRPNVGKSSLLNRF 218
                   689**********9986 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.3   7.1e+02      60      78 ..      27      45 ..      21      53 .. 0.84
   2 ?    6.9   0.0    0.0053         3      52      92 ..     193     232 ..     181     242 .. 0.82
   3 ?    2.0   0.0      0.17        93      94     147 ..     253     308 ..     245     315 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.3
                EEEEESSTSTHHHHHHHHH CS
         MCM 60 vllvgdpgtaKsqlLkyve 78
                v +vg p ++Ks+l++++ 
  KIR61291.1 27 VAVVGRPNVGKSTLVNRII 45
                6689**********98875 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0053
                 SBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSS CS
         MCM  52 tklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgs 92 
                 ++ rg   v lvg p ++Ks lL++ +   +rav  s +g+
  KIR61291.1 193 NRPRGPRRVALVGRPNVGKSSLLNRFS-GEERAVVDSVAGT 232
                 46799999***************9987.5566666666655 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.17
                 SSHSSSEEEEESSSSS..EEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHH CS
         MCM  94 aagLtaavvrdeetge..fvleaGalvladkGvcciDefdkmkeedrsalhEamEq 147
                 +agL   v + + t+       aGa+  a+  v+++D  + ++e+d+  l+ + E 
  KIR61291.1 253 TAGLRKRVGKASGTEYyaSLRTAGAIEAAEVAVVLLDSSEPISEQDQRILSMVTEA 308
                 56777777766666652133579************************999988775 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.025        14      25      39 ..      27      41 ..      15      45 .. 0.85
   2 ?    4.3   0.0     0.058        33      23      39 ..     197     215 ..     189     218 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.025
      AAA_29 25 tlltGpsGsGKSTll 39
                + ++G+  +GKSTl+
  KIR61291.1 27 VAVVGRPNVGKSTLV 41
                6799**********8 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.058
      AAA_29  23 g..atlltGpsGsGKSTll 39 
                 g   + l+G+  +GKS+ll
  KIR61291.1 197 GprRVALVGRPNVGKSSLL 215
                 4445899**********98 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0       0.1        56       2      27 ..      27      52 ..      26     112 .. 0.85
   2 ?    5.6   0.0     0.031        17       1      32 [.     200     231 ..     200     238 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.1
      AAA_28  2 ivitGgestGKTtlleaLaargypvv 27
                ++++G +  GK+tl++++  r   vv
  KIR61291.1 27 VAVVGRPNVGKSTLVNRIIGRRQAVV 52
                789999**********9876655554 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.031
      AAA_28   1 kivitGgestGKTtlleaLaargypvvpEaar 32 
                 +++++G +  GK++ll++++ ++  vv  +a 
  KIR61291.1 200 RVALVGRPNVGKSSLLNRFSGEERAVVDSVAG 231
                 799*****************998888876665 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0027       1.5      22      45 ..      26      49 ..      18      59 .. 0.85
   2 ?    0.8   0.0      0.41   2.3e+02      22      39 ..     200     217 ..     187     229 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0027
                EEEEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC 22 vvalvGmgGvGKttlakqilnksd 45
                vva+vG++ vGK+tl++ i+   +
  KIR61291.1 26 VVAVVGRPNVGKSTLVNRIIGRRQ 49
                89***************9987655 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.41
                 EEEEEESTTSSHHHHHHH CS
      NB-ARC  22 vvalvGmgGvGKttlakq 39 
                  valvG++ vGK+ l++ 
  KIR61291.1 200 RVALVGRPNVGKSSLLNR 217
                 699**********99875 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.076        43       1      20 [.      29      48 ..      29      68 .. 0.87
   2 ?   -1.4   0.0       2.9   1.6e+03     147     170 ..     123     146 ..      97     161 .. 0.72
   3 ?   -2.3   0.0       5.6   3.2e+03       2      17 ..     204     219 ..     203     236 .. 0.84
   4 ?    3.9   0.0     0.069        38     125     179 ..     283     332 ..     266     382 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.076
  ATP_bind_1  1 vvGpaGsGKttfvgalseil 20
                vvG + +GK+t+v++++  +
  KIR61291.1 29 VVGRPNVGKSTLVNRIIGRR 48
                89***********9987655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.9
  ATP_bind_1 147 salsamlrlelPhvvvlnkfDllk 170
                 +a++++ r   P + v nk+D   
  KIR61291.1 123 AAVKMLRRSAKPVILVANKADNTT 146
                 367788888899999***999855 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 5.6
  ATP_bind_1   2 vGpaGsGKttfvgals 17 
                 vG + +GK+++ +++s
  KIR61291.1 204 VGRPNVGKSSLLNRFS 219
                 79999******99887 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.069
  ATP_bind_1 125 vvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkeklekelef 179
                 v+v+L+Ds    +  +   +    ls++ +++   v+++nk Dl++ ++++ l+ 
  KIR61291.1 283 VAVVLLDSSEPISEQD---Q--RILSMVTEAGRALVIAFNKWDLVDGDRRYYLDK 332
                 6677777655444222...1..345678999999**********99774444433 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0056       3.1      53     104 ..     130     184 ..      97     185 .. 0.78
   2 ?    1.5   0.0      0.52   2.9e+02      59      98 ..     313     362 ..     309     369 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0056
  MMR_HSR1_Xtn  53 rvYipclyvlNKiDlisleelde.lare..pnsvviSaekelnldeLkekiweeL 104
                   r+ +p+++v NK+D  ++e  ++ l +    +  ++Sa ++ +  +L+++i + L
    KIR61291.1 130 RSAKPVILVANKADNTTIEMESTsLWSLglGEPHPVSALHGRGSGDLLDRILQAL 184
                   566899*********777644430334344699999*****99999999998876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.52
  MMR_HSR1_Xtn  59 lyvlNKiDlisleeldelare..........pnsvviSaekelnldeLke 98 
                   ++++NK Dl++ +    l++e             + +Sa+++  +d+L  
    KIR61291.1 313 VIAFNKWDLVDGDRRYYLDKEierelrripwALRINLSAKTGRAVDKLAP 362
                   67899*99977666655555444444444333556688888888888875 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.025        14       1      18 [.      27      44 ..      27     135 .. 0.83
   2 ?    3.5   0.0      0.17        97       1      21 [.     201     221 ..     201     243 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.025
      AAA_18  1 IlltGtpGvGKttlakeL 18
                +++ G p vGK+tl +++
  KIR61291.1 27 VAVVGRPNVGKSTLVNRI 44
                6899**********9887 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.17
      AAA_18   1 IlltGtpGvGKttlakeLskr 21 
                 ++l G p vGK++l ++ s +
  KIR61291.1 201 VALVGRPNVGKSSLLNRFSGE 221
                 6899**********9887655 PP

>> NOG1  Nucleolar GTP-binding protein 1 (NOG1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   2.1     0.025        14      13      58 .]     103     143 ..      92     143 .. 0.71
   2 ?   -1.6   0.0       4.2   2.4e+03      42      58 .]     306     320 ..     281     320 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.025
        NOG1  13 ladavlFllDpseecgysleeQlsLleeikelfankpvivvlnKiD 58 
                 +ad+vlF++D+   + ++++   + ++ ++     kpvi v+nK+D
  KIR61291.1 103 TADVVLFVVDAMVGS-TDVD--EAAVKMLRRS--AKPVILVANKAD 143
                 578899999987654.3333..4556666666..379999999998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.2
        NOG1  42 kelfankpvivvlnKiD 58 
                  e  + + +++++nK D
  KIR61291.1 306 TEA-G-RALVIAFNKWD 320
                 333.2.57889999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 3143.38
//
Query:       KIR61292.1  [L=308]
Description: transposase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-22   79.9   0.0    3.7e-22   78.7   0.0    1.6  2  rve       Integrase core domain
      4e-18   65.3   3.7    1.6e-17   63.3   1.8    2.4  2  HTH_21    HTH-like domain
    2.9e-10   39.7   0.0    5.5e-10   38.9   0.0    1.5  1  rve_3     Integrase core domain
    3.4e-09   36.7   0.1    5.7e-09   36.0   0.1    1.3  1  rve_2     Integrase core domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         2   9.1e+03      97     115 ..      72      90 ..      64      91 .. 0.68
   2 !   78.7   0.0   8.3e-26   3.7e-22       2     116 ..     126     239 ..     125     242 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2
         rve  97 trpgrpqdnGkvErfhrtl 115
                  r gr   + +vEr +rt+
  KIR61292.1  72 RRQGRQVGRKRVERLMRTV 90 
                 5566666666788888886 PP

  == domain 2  score: 78.7 bits;  conditional E-value: 8.3e-26
         rve   2 trpgelwqvDvtvvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggve.pervlsDngseytskafrefladlgirvsftrp 99 
                 ++p++lw +D+t ++   g+g  +l++v d+fs++i+++ +sd+ d++++l++le  ++++  +   ++++sD+gs yts +f++ lad+gi +s+  +
  KIR61292.1 126 AAPNRLWVADATRIP--CGEGVFWLAAVRDVFSNRIVGWRCSDRCDTDLILGALEYGIWSRDVRDgQLIHHSDRGSNYTSFRFAQRLADNGILPSMGSV 222
                 58**********999..55667*****************************************9999******************************** PP

         rve 100 grpqdnGkvErfhrtlk 116
                 g++ dn+++E+f+ tlk
  KIR61292.1 223 GDSFDNALMENFWSTLK 239
                 ****************9 PP

>> HTH_21  HTH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   1.8   3.7e-21   1.6e-17       2      59 ..      42      99 ..      41     100 .. 0.91
   2 ?    0.9   0.0      0.12   5.2e+02      12      30 ..     257     275 ..     251     283 .. 0.80

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 3.7e-21
      HTH_21  2 addallal.ireifeeskgrYGyrriwaeLrreggvrvnhkrVrRlMrelGLrgvqrrk 59
                ++da+la+ i ei+e s g+YG++r++a+Lrr+g  +v++krV+RlMr  GL+g   rk
  KIR61292.1 42 REDADLAVeIAEIHEVSGGTYGSPRVHAMLRRQGR-QVGRKRVERLMRTVGLQGAFLRK 99
                578988888************************87.7****************987666 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.12
      HTH_21  12 eifeeskgrYGyrriwaeL 30 
                 +if+   g Y  rri+++L
  KIR61292.1 257 AIFAYIDGWYNTRRIQKDL 275
                 6777778888888888877 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   1.2e-13   5.5e-10       2      67 .]     214     280 ..     213     280 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 1.2e-13
       rve_3   2 gielsyiapgkPqqNglvEsfngtlrdellneelfrslaearekleawre.dYNteRPHssLgykTP 67 
                 gi +s++ +g+  +N+l+E f+ tl+ el++++++r+ +ea+ ++ a+++ +YNt+R  + Lg+++P
  KIR61292.1 214 GILPSMGSVGDSFDNALMENFWSTLKIELVYRNSWRTRDEAENAIFAYIDgWYNTRRIQKDLGWRSP 280
                 8899********************************************987*************998 PP

>> rve_2  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.1   1.3e-12   5.7e-09       1      49 [.     232     285 ..     232     286 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 1.3e-12
       rve_2   1 EsfFgsLKtElvygetfktleeleaaiedYIe.wYNnkR....lkglsPvqYrn 49 
                 E+f+ +LK Elvy   + t++e+e ai+ YI+ wYN+ R    l+  sP +Y++
  KIR61292.1 232 ENFWSTLKIELVYRNSWRTRDEAENAIFAYIDgWYNTRRiqkdLGWRSPDEYET 285
                 9******************************8679****444445899999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2185.67
//
Query:       KIR61293.1  [L=619]
Description: hypothetical protein TK50_26660 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-07   31.2  36.9    0.00038   20.8   4.2    6.7  6  HEAT_2    HEAT repeats
      0.001   19.2  13.1       0.28   11.5   0.4    5.5  5  HEAT      HEAT repeat
  ------ inclusion threshold ------
       0.23   11.6   3.4         28    4.9   0.0    4.0  4  Arm       Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   4.2   6.3e-08   0.00038       2      60 ..      49     111 ..      48     135 .. 0.76
   2 !    5.2   0.2    0.0045        27      41      80 ..     121     165 ..     116     173 .. 0.63
   3 ?   -0.7   0.3      0.33     2e+03      29      55 ..     224     250 ..     214     292 .. 0.49
   4 !   18.0   0.3   4.7e-07    0.0028      44      79 ..     308     343 ..     275     352 .. 0.79
   5 ?   -1.0   8.2      0.39   2.4e+03      16      77 ..     389     455 ..     383     466 .. 0.60
   6 ?    1.8   0.0     0.052   3.1e+02      32      73 ..     537     582 ..     519     588 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 6.3e-08
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp.....ealpaLvellededpavRraaaeaLgaigd 60 
                  +Ll+++  d +p+vr +++ +L+++ ++      a +a   +l d+d++vRraaa+  +a + 
  KIR61293.1  49 RHLLARV-ADGSPDVRLMVLAVLADLCPQeglwpAAADAAAVALGDPDERVRRAAAWLFVAAAG 111
                 5899999.9***************99988566667799999999************96655444 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0045
      HEAT_2  41 ededpavRraaaeaL.....gaigdpealpaLkellddddddvvR 80 
                  ++dp +R a aeaL      + ++   +  L +++++dd++ vR
  KIR61293.1 121 GSSDPVTRTALAEALwlrmlQQSDHGGRWVDLVDRMRRDDHPAVR 165
                 567777777777777443322334455677777777777777776 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.33
      HEAT_2  29 npealpaLvelled.edpavRraaaeaL 55 
                 +++a +a+ +l++  e++ vR+a   a+
  KIR61293.1 224 EQDAYAAVGQLVRAgEKECVRQA-GLAI 250
                 44555555555544133333333.2222 PP

  == domain 4  score: 18.0 bits;  conditional E-value: 4.7e-07
      HEAT_2  44 dpavRraaaeaLgaigdpealpaLkellddddddvv 79 
                 +pav +++a aLg +gdp+a+p L++ll ddd + +
  KIR61293.1 308 EPAVSAEVAVALGCVGDPRAVPELLRLLGDDDPPSR 343
                 588889999999999999999999999988877654 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.39
      HEAT_2  16 vrraairaLg...rignpealpaLvellededpavRraaaeaLgaigdpe..alpaLkelldddddd 77 
                 v+ + + aLg     + p++ + L ++++ +     r ++ aL+aig  +  a+p+L++++ + d +
  KIR61293.1 389 VAVRLLSALGphaADAVPDLAARLADAMQRDVLPEARPVVGALAAIGAAAapAVPLLRRYAVSSDAA 455
                 5666667777421112245566666666555544455678899999975534899999988765543 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.052
      HEAT_2  32 alpaLvell.ed.edpavRraaaeaLgaigdpe..alpaLkelldd 73 
                 a p+L++ l +  +d      a +aL+a+g ++  ++p+L +l ++
  KIR61293.1 537 AAPTLLSTLpQYlDDDTFAPPAMKALAAMGPHArpVIPVLDRLITS 582
                 5566666664323566666678999999997554478888887765 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.3    0.0001      0.61       2      29 ..      48      75 ..      47      76 .. 0.90
   2 !   11.5   0.4   4.7e-05      0.28       8      26 ..      90     108 ..      87     110 .. 0.88
   3 ?   -0.8   0.0      0.44   2.6e+03      10      24 ..     121     135 ..     117     136 .. 0.83
   4 ?   -1.1   0.1      0.55   3.3e+03       5      17 ..     153     165 ..     150     168 .. 0.76
   5 ?    0.9   0.1      0.12   7.5e+02       2      15 ..     328     341 ..     327     344 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0001
                HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT  2 lPlllkllsDpspeVReaAakaLgalae 29
                + +ll    D sp+VR +++  L++l++
  KIR61293.1 48 VRHLLARVADGSPDVRLMVLAVLADLCP 75
                568899999*****************97 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.7e-05
                 HHT-SSHHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLga 26 
                 +l Dp+ +VR+aAa+ ++a
  KIR61293.1  90 ALGDPDERVRRAAAWLFVA 108
                 689************9876 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.44
                 T-SSHHHHHHHHHHH CS
        HEAT  10 sDpspeVReaAakaL 24 
                  +++p  R a a+aL
  KIR61293.1 121 GSSDPVTRTALAEAL 135
                 7899999*****998 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.55
                 HHHHHT-SSHHHH CS
        HEAT   5 llkllsDpspeVR 17 
                 + ++ +D++p VR
  KIR61293.1 153 VDRMRRDDHPAVR 165
                 455569******* PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.12
                 HHHHHHHHT-SSHH CS
        HEAT   2 lPlllkllsDpspe 15 
                 +P ll+ll D++p 
  KIR61293.1 328 VPELLRLLGDDDPP 341
                 699********996 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.29   1.8e+03      14      40 ..      48      74 ..      47      74 .. 0.83
   2 ?    4.9   0.0    0.0047        28      21      34 ..      91     104 ..      89     106 .. 0.89
   3 ?   -2.6   0.1       1.1   6.8e+03      20      37 ..     118     136 ..     117     136 .. 0.78
   4 ?    4.4   0.0    0.0072        43       8      26 ..     322     340 ..     320     343 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.29
                HHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm 14 vppLvrLLssedeevqeeAawALsNLa 40
                v++L++   +++++v+  +++ L+ L+
  KIR61293.1 48 VRHLLARVADGSPDVRLMVLAVLADLC 74
                77777777899*****99999998777 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0047
                 TTTSSHHHHHHHHH CS
         Arm  21 LssedeevqeeAaw 34 
                 L ++de+v+++Aaw
  KIR61293.1  91 LGDPDERVRRAAAW 104
                 6689********** PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.1
                 HTT.TSSHHHHHHHHHHHH CS
         Arm  20 LLs.sedeevqeeAawALs 37 
                 LL  s d+ ++++ a AL+
  KIR61293.1 118 LLFgSSDPVTRTALAEALW 136
                 5667889999999988887 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.0072
                 HHHTTHHHHHHHHTTTSSH CS
         Arm   8 vieaGavppLvrLLssede 26 
                 v +  avp L+rLL ++d+
  KIR61293.1 322 VGDPRAVPELLRLLGDDDP 340
                 678889********98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4276.79
//
Query:       KIR61294.1  [L=143]
Description: hypothetical protein TK50_26665 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       134  (0.00747392); expected 358.6 (0.02)
Passed bias filter:                      122  (0.00680462); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1240.42
//
Query:       KIR61295.1  [L=177]
Description: hypothetical protein TK50_26670 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       174  (0.00970495); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1363.10
//
Query:       KIR61296.1  [L=88]
Description: hypothetical protein TK50_26685 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.076   12.9   0.1      0.086   12.8   0.1    1.1  1  DUF2755   Protein of unknown function (DUF2755)
       0.08   13.0   1.0       0.08   13.0   1.0    2.8  3  CcmD      Heme exporter protein D (CcmD)
      0.097   12.6   2.0       0.13   12.2   2.0    1.2  1  YrhK      YrhK-like protein
       0.18   11.8   2.4        3.7    7.6   0.1    2.6  2  FixQ      Cbb3-type cytochrome oxidase component FixQ


Domain annotation for each model (and alignments):
>> DUF2755  Protein of unknown function (DUF2755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.9e-05     0.086      31      84 ..      18      73 ..       8      87 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.9e-05
     DUF2755 31 llclwaGaqllnl..lvhapGvlerlmqaqesarpqveislavG.tlfglvpflaGl 84
                +l +waG  ll l  l  a G +  ++ +   + p+   + avG tlf  vpf+ Gl
  KIR61296.1 18 MLIVWAGRGLLWLatLFFAVGTVVAVVSTLTDSWPESGTAYAVGgTLFYTVPFV-GL 73
                6889***99975533899************************9549******97.44 PP

>> CcmD  Heme exporter protein D (CcmD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.69   3.1e+03      35      42 ..       3      10 ..       1      17 [. 0.55
   2 ?   -1.8   1.5      0.77   3.5e+03      21      21 ..      33      33 ..      18      48 .. 0.61
   3 ?   13.0   1.0   1.8e-05      0.08      16      34 ..      68      86 ..      56      88 .] 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.69
        CcmD 35 elrrleaR 42
                 +r+lea+
  KIR61296.1  3 TIRDLEAA 10
                44555554 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.77
        CcmD 21 L 21
                L
  KIR61296.1 33 L 33
                1 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 1.8e-05
        CcmD 16 lvlagLilwslrdrrrllr 34
                + ++gL++w++rd +rl++
  KIR61296.1 68 VPFVGLLWWTVRDAQRLRT 86
                679**************97 PP

>> YrhK  YrhK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.0   2.9e-05      0.13      13      57 ..      30      73 ..      21      75 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-05
        YrhK 13 igsllFlvGSilflpnsefwkwqiagvwlFliGSilflirpvirl 57
                ++ l+F vG +++ +++ +++w + g+ ++ +G++lf   p + l
  KIR61296.1 30 LATLFFAVGTVVAVVSTLTDSWPESGT-AYAVGGTLFYTVPFVGL 73
                7889**********666699*******.**********9998765 PP

>> FixQ  Cbb3-type cytochrome oxidase component FixQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.4     0.013        60      13      28 ..      30      45 ..      24      52 .. 0.64
   2 ?    7.6   0.1   0.00082       3.7      12      32 ..      60      80 ..      53      87 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.013
        FixQ 13 wgllflvllfygvviy 28
                + +lf+++  + +v+ 
  KIR61296.1 30 LATLFFAVGTVVAVVS 45
                4466666666666665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00082
        FixQ 12 swgllflvllfygvviyafrp 32
                  g+lf ++ f+g+++++ r 
  KIR61296.1 60 VGGTLFYTVPFVGLLWWTVRD 80
                569**************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 635.99
//
Query:       KIR61297.1  [L=517]
Description: hypothetical protein TK50_26695 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3532.78
//
Query:       KIR61298.1  [L=260]
Description: transposase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-31  108.1   0.0    4.6e-31  107.6   0.0    1.2  1  DDE_Tnp_4  DDE superfamily endonuclease
      1e-12   47.6   0.0    3.3e-12   46.0   0.0    2.0  2  HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
    2.9e-11   43.4   1.2    2.9e-11   43.4   1.2    2.1  2  DDE_Tnp_1  Transposase DDE domain
  ------ inclusion threshold ------
      0.058   13.0   0.2      0.099   12.2   0.2    1.4  1  CobU       Cobinamide kinase / cobinamide phosphate guanyltra


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6   0.0     1e-34   4.6e-31       1     157 [.     102     251 ..     102     252 .. 0.96

  Alignments for each domain:
  == domain 1  score: 107.6 bits;  conditional E-value: 1e-34
   DDE_Tnp_4   1 iDgteipiqrpsnleeraqtysnykkkntlkvlivvdpngkiifvskgypGsvsDkeilensgllkalkeavkpgdvilaDkgFklse.kllvpykk.k 97 
                 +Dgt ipi+r  +   ++ +ys+++k+++++v+++ d+ g+ ++ s + pGsv+D ++++ +g+++al     ++ + +aDkg+++++ ++++p+k+ +
  KIR61298.1 102 LDGTLIPIDRVAD---QKPYYSGKHKRHGVNVQVIADAAGRLVWASPALPGSVHDLTAARTHGIIEALT---SANVMTFADKGYQGARgSVRTPFKRhR 194
                 6***********9...***************************************************99...57799********9886778***9999 PP

   DDE_Tnp_4  98 kkkqlseeevefnraiasarihvErvigrlkgrfrilrsrlriklvekidkivkvccvLh 157
                  + +ls ++++ nra+a++r   Er+i++lk ++++l  +lr + +++   iv++++vLh
  KIR61298.1 195 FRPKLSRRQKAVNRAHAKIRARGERAIATLK-TWKVLA-KLRCC-PRRSTPIVQAILVLH 251
                 99*****************************.*****5.99***.**************9 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   7.3e-16   3.3e-12       1      50 [.      34      83 ..      34      86 .. 0.95
   2 ?   -3.4   0.0       1.8   8.2e+03      12      18 ..     229     235 ..     229     237 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 7.3e-16
   HTH_Tnp_4  1 rkLsledqllltLvyLRlnltyqdLayrFgvsestvsrifhkwvdlLaer 50
                r+L+   q+ll+L +LR ++ty  La++F v +st++r++++ + lLa++
  KIR61298.1 34 RRLDAGRQALLALAHLRNGDTYTRLAAGFTVGVSTAWRYVQEAIALLATA 83
                589999*****************************************986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.8
   HTH_Tnp_4  12 tLvyLRl 18 
                 +L +LR+
  KIR61298.1 229 VLAKLRC 235
                 799***8 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       0.2   9.1e+02     184     209 ..      22      47 ..      11      61 .. 0.65
   2 !   43.4   1.2   6.6e-15   2.9e-11       8     190 ..     101     229 ..      99     248 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.2
   DDE_Tnp_1 184 lkrkfgldrlryrglnrveaqlllll 209
                 ++++ + +r r+r+l++ +++ll+l+
  KIR61298.1  22 IRSHRHQRRSRWRRLDAGRQALLALA 47 
                 44444555666666665555555554 PP

  == domain 2  score: 43.4 bits;  conditional E-value: 6.6e-15
   DDE_Tnp_1   8 ivDattvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvit.pgnvhdskglkq..lldelrprkgklvlaDaGYas..aelldtleekgvd 101
                 i+D+t++++ +   d+++ y+g+++++g++++++ d+  g ++++    pg+vhd +++++  ++++l    ++ ++aD+GY++   +++   +     
  KIR61298.1 101 ILDGTLIPIDRVA-DQKPYYSGKHKRHGVNVQVIADAA-GRLVWASPAlPGSVHDLTAARThgIIEALTS-ANVMTFADKGYQGarGSVRTPFK----- 191
                 89*******8888.99999*******************.5688998888************777777777.***********965455666666..... PP

   DDE_Tnp_1 102 yiirlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgl 190
                                          +h  +  l+++qk+ n+                         + +++R++ Er +++lk+ ++ 
  KIR61298.1 192 -------------------------RHRFRPKLSRRQKAVNR-------------------------AHAKIRARGERAIATLKT-WKV 229
                 .........................8999999**********.........................******************.553 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   2.2e-05     0.099      39      67 ..      18      46 ..      10      99 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.2e-05
        CobU 39 maeRiarHrerRpaeWetveepldlaeal 67
                +a+Ri+ Hr++R ++W+ +++ ++   al
  KIR61298.1 18 LADRIRSHRHQRRSRWRRLDAGRQALLAL 46
                789***************99876544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1830.24
//
Query:       KIR61299.1  [L=59]
Description: hypothetical protein TK50_26705 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       172  (0.0095934); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 427.28
//
Query:       KIR61300.1  [L=489]
Description: hypothetical protein TK50_26710 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-11   42.8 115.6    0.00013   22.1   1.7   14.6 15  LRV       Leucine rich repeat variant
    1.9e-08   33.8  20.6       0.92    9.9   0.1   10.1 10  HEAT      HEAT repeat
    3.6e-05   24.1  28.8      0.045   14.1   1.2    8.3  6  HEAT_2    HEAT repeats
  ------ inclusion threshold ------
       0.35   10.9   3.5        9.2    6.3   0.0    3.9  5  HTH_15    Helix-turn-helix domain of alkylmercury lyase
        6.7    7.3  27.3        2.1    8.9   0.0    8.0  8  HEAT_EZ   HEAT-like repeat


Domain annotation for each model (and alignments):
>> LRV  Leucine rich repeat variant
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.4   0.00054       1.9       6      22 ..      17      33 ..      12      34 .. 0.87
   2 ?    3.6   1.1     0.029     1e+02       7      25 ..      68      88 ..      64      89 .. 0.87
   3 !    7.4   4.1    0.0018       6.4       2      26 .]      89     114 ..      88     114 .. 0.86
   4 !   18.6   4.5   4.8e-07    0.0017       1      26 []     115     140 ..     115     140 .. 0.97
   5 ?    2.5   2.4     0.065   2.3e+02       2      25 ..     142     166 ..     141     167 .. 0.78
   6 ?   -3.5   0.2         5   1.8e+04       2       7 ..     169     174 ..     169     174 .. 0.85
   7 ?   -0.6   0.1      0.63   2.2e+03      14      25 ..     188     199 ..     188     200 .. 0.93
   8 ?    2.2   1.1     0.083     3e+02       4      26 .]     202     224 ..     199     224 .. 0.87
   9 !   20.9   2.9   9.1e-08   0.00033       2      26 .]     226     250 ..     225     250 .. 0.96
  10 ?   -2.9   0.1       3.4   1.2e+04      11      20 ..     288     297 ..     286     297 .. 0.79
  11 !    7.2   2.3    0.0021       7.4       4      25 ..     332     353 ..     332     354 .. 0.91
  12 !   10.3   0.3   0.00021      0.76      14      26 .]     398     410 ..     397     410 .. 0.97
  13 !    8.1   3.5    0.0011       3.8      10      26 .]     420     436 ..     414     436 .. 0.91
  14 !   22.1   1.7   3.6e-08   0.00013       3      25 ..     439     461 ..     439     462 .. 0.96
  15 ?   -0.7   0.7      0.68   2.4e+03       2      22 ..     464     484 ..     463     485 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00054
         LRV  6 aVArrPdlPpeaLerLa 22
                 +A++P+lP+++++rL+
  KIR61300.1 17 GLAENPALPAGMVRRLV 33
                58*************97 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.029
         LRV  7 VArrPdlPpeaLerLah..DP 25
                +A++P+lP  ++ rLa+  DP
  KIR61300.1 68 LALNPQLPHTVRMRLAAhtDP 88
                79*************996666 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0018
         LRV   2 eVRaaVArr.PdlPpeaLerLahDPd 26 
                 +VRaa+A++  d+P+e  e+L +DPd
  KIR61300.1  89 AVRAALAAHaRDAPRELYEQLIDDPD 114
                 789998877469*************9 PP

  == domain 4  score: 18.6 bits;  conditional E-value: 4.8e-07
         LRV   1 reVRaaVArrPdlPpeaLerLahDPd 26 
                 ++VR ++A+r d P++ L rLa DPd
  KIR61300.1 115 TRVRSNLAERDDVPADLLARLAGDPD 140
                 58***********************9 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.065
         LRV   2 eVRaaVAr...rPdlPpeaLerLahDP 25 
                 +VRa++Ar      +P + +++L++DP
  KIR61300.1 142 QVRATLARwwtQ--APEAIRRALLTDP 166
                 678888875435..9999999999999 PP

  == domain 6  score: -3.5 bits;  conditional E-value: 5
         LRV   2 eVRaaV 7  
                 eVRaa+
  KIR61300.1 169 EVRAAA 174
                 79*996 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 0.63
         LRV  14 PpeaLerLahDP 25 
                 Pp+ +  L++DP
  KIR61300.1 188 PPDLVTGLLADP 199
                 9999*******9 PP

  == domain 8  score: 2.2 bits;  conditional E-value: 0.083
         LRV   4 RaaVArrPdlPpeaLerLahDPd 26 
                 Ra ++r+  l p    +La DPd
  KIR61300.1 202 RAGAVRHAILTPQLAAQLAGDPD 224
                 8888888888899999******9 PP

  == domain 9  score: 20.9 bits;  conditional E-value: 9.1e-08
         LRV   2 eVRaaVArrPdlPpeaLerLahDPd 26 
                 +VR+++A++P+lPp+++  L +DP+
  KIR61300.1 226 QVRRQLAEHPQLPPPVRDLLTDDPS 250
                 7***********************6 PP

  == domain 10  score: -2.9 bits;  conditional E-value: 3.4
         LRV  11 PdlPpeaLer 20 
                  dl+ +aL++
  KIR61300.1 288 DDLDDDALLQ 297
                 5899999986 PP

  == domain 11  score: 7.2 bits;  conditional E-value: 0.0021
         LRV   4 RaaVArrPdlPpeaLerLahDP 25 
                 R+ +Ar   lPp+a+ rL+ D 
  KIR61300.1 332 RRSAARSRTLPPDAVTRLLNDN 353
                 88999999***********995 PP

  == domain 12  score: 10.3 bits;  conditional E-value: 0.00021
         LRV  14 PpeaLerLahDPd 26 
                 Pp +L+rLa+DPd
  KIR61300.1 398 PPQTLRRLATDPD 410
                 9***********9 PP

  == domain 13  score: 8.1 bits;  conditional E-value: 0.0011
         LRV  10 rPdlPpeaLerLahDPd 26 
                   dlP+e  erLa+DPd
  KIR61300.1 420 DLDLPVELAERLATDPD 436
                 579*************9 PP

  == domain 14  score: 22.1 bits;  conditional E-value: 3.6e-08
         LRV   3 VRaaVArrPdlPpeaLerLahDP 25 
                 +R aVAr+P+lP+  +++L++DP
  KIR61300.1 439 IRHAVARHPNLPVHIRRALLADP 461
                 69********************9 PP

  == domain 15  score: -0.7 bits;  conditional E-value: 0.68
         LRV   2 eVRaaVArrPdlPpeaLerLa 22 
                 +V  a A+ P lP++   rL+
  KIR61300.1 464 RVAHATATAPTLPVPEMDRLL 484
                 688999*******98777765 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.11   3.8e+02       8      21 ..      82      95 ..      74      96 .. 0.78
   2 ?    4.4   0.0     0.015        55       6      21 ..     107     122 ..     103     123 .. 0.80
   3 !    8.0   0.0    0.0011       3.8       4      22 ..     131     149 ..     128     153 .. 0.84
   4 !    9.9   0.1   0.00026      0.92       8      22 ..     162     176 ..     156     179 .. 0.85
   5 ?    3.1   0.0     0.039   1.4e+02       3      21 ..     213     232 ..     211     233 .. 0.76
   6 ?    1.1   0.1      0.17   6.2e+02       3      17 ..     239     254 ..     238     256 .. 0.83
   7 ?    2.0   0.0     0.094   3.4e+02       5      19 ..     346     360 ..     344     363 .. 0.84
   8 ?    1.6   0.0      0.13   4.5e+02       5      20 ..     402     417 ..     399     417 .. 0.80
   9 !    5.0   0.0      0.01        36       5      22 ..     427     445 ..     423     446 .. 0.80
  10 ?    0.8   0.0      0.22     8e+02       8      22 ..     457     471 ..     449     472 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.11
                HHT-SSHHHHHHHH CS
        HEAT  8 llsDpspeVReaAa 21
                l  +++p VR+a a
  KIR61300.1 82 LAAHTDPAVRAALA 95
                4589******9976 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.015
                 HHHHT-SSHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAa 21 
                  +l+ Dp+ +VR++ a
  KIR61300.1 107 EQLIDDPDTRVRSNLA 122
                 56779*******9876 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0011
                 HHHHHHT-SSHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAak 22 
                 ll +l  Dp+p+VR++ a+
  KIR61300.1 131 LLARLAGDPDPQVRATLAR 149
                 677888********99886 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00026
                 HHT-SSHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAak 22 
                 ll+Dp  eVR+aA+ 
  KIR61300.1 162 LLTDPVDEVRAAACA 176
                 57***********97 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.039
                 HHHHHHH.T-SSHHHHHHHH CS
        HEAT   3 Plllkll.sDpspeVReaAa 21 
                 P l   l  Dp+ +VR+  a
  KIR61300.1 213 PQLAAQLaGDPDHQVRRQLA 232
                 77766666*******98765 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.17
                 HHHHHHH.T-SSHHHH CS
        HEAT   3 Plllkll.sDpspeVR 17 
                 P++  ll  Dps++VR
  KIR61300.1 239 PPVRDLLtDDPSANVR 254
                 6677888788*****9 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.094
                 HHHHHT-SSHHHHHH CS
        HEAT   5 llkllsDpspeVRea 19 
                 + +ll+D+++ VR +
  KIR61300.1 346 VTRLLNDNDSGVRTT 360
                 6789*********76 PP

  == domain 8  score: 1.6 bits;  conditional E-value: 0.13
                 HHHHHT-SSHHHHHHH CS
        HEAT   5 llkllsDpspeVReaA 20 
                 l +l +Dp+p+ R+ A
  KIR61300.1 402 LRRLATDPDPRMRSLA 417
                 66777******99866 PP

  == domain 9  score: 5.0 bits;  conditional E-value: 0.01
                 HHHHH.T-SSHHHHHHHHH CS
        HEAT   5 llkll.sDpspeVReaAak 22 
                 l + l +Dp++ +R a+a+
  KIR61300.1 427 LAERLaTDPDSMIRHAVAR 445
                 666666**********986 PP

  == domain 10  score: 0.8 bits;  conditional E-value: 0.22
                 HHT-SSHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAak 22 
                 ll Dp+ +V  a+a 
  KIR61300.1 457 LLADPNERVAHATAT 471
                 569******998886 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   1.0     0.005        18      13      52 ..      87     122 ..      78     124 .. 0.53
   2 !   14.1   1.2   1.3e-05     0.045       3      72 ..     130     196 ..     128     210 .. 0.70
   3 !    7.0   0.3    0.0021       7.6       2      48 ..     213     254 ..     212     258 .. 0.73
   4 ?    0.5   0.0      0.22   8.1e+02      35      52 ..     345     362 ..     339     373 .. 0.73
   5 !    6.7   0.7    0.0026       9.5       6      52 ..     403     444 ..     399     446 .. 0.65
   6 ?   -0.0   0.2      0.33   1.2e+03      38      54 ..     456     472 ..     451     472 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.005
      HEAT_2  13 dpevrraairaLgrignpealpaLvellededpavRraaa 52 
                 dp+vr+a    L+  + +  +++  +l++d+d++vR + a
  KIR61300.1  87 DPAVRAA----LAAHARDAPRELYEQLIDDPDTRVRSNLA 122
                 4444443....33344444455555666777777776655 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.3e-05
      HEAT_2   3 aLlqalendpdpevrraairaLgrignpealpaLvell.ededpavRraaae.aLgaigdpealpaLkelld 72 
                  Ll++l+ dpdp+vr++ +r   +  +     a++++l +d+  +vR+aa+  + +++ +p   p L   l+
  KIR61300.1 130 DLLARLAGDPDPQVRATLARWWTQAPE-----AIRRALlTDPVDEVRAAACAtYYARLPHPVPPPDLVTGLL 196
                 58999999********99998876444.....5666444***********9624456666655555555555 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0021
      HEAT_2   2 daLlqalendpdpevrraairaLgrignpealpaLvell.ededpavR 48 
                 ++L ++l+ dpd++vrr+ ++      +p++ p +++ll +d++++vR
  KIR61300.1 213 PQLAAQLAGDPDHQVRRQLAE------HPQLPPPVRDLLtDDPSANVR 254
                 789999999*******99876......566666666666444666666 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.22
      HEAT_2  35 aLvellededpavRraaa 52 
                 a+++ll+d d+ vR + a
  KIR61300.1 345 AVTRLLNDNDSGVRTTMA 362
                 556666666666666544 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.0026
      HEAT_2   6 qalendpdpevrraairaLgrignpealpaLvellededpavRraaa 52 
                  +l++dpdp  r  a r L        +++  +l++d+d+++R+a+a
  KIR61300.1 403 RRLATDPDPRMRSLAPRDLDL-----PVELAERLATDPDSMIRHAVA 444
                 445566666666666666654.....477777788888888888877 PP

  == domain 6  score: -0.0 bits;  conditional E-value: 0.33
      HEAT_2  38 ellededpavRraaaea 54 
                  ll d++++v +a a+a
  KIR61300.1 456 ALLADPNERVAHATATA 472
                 45678888888877765 PP

>> HTH_15  Helix-turn-helix domain of alkylmercury lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.79   2.8e+03      46      60 ..      84      98 ..      79     115 .. 0.71
   2 ?    6.3   0.0    0.0026       9.2      30      57 ..     121     148 ..     116     152 .. 0.90
   3 ?   -3.2   0.0       2.4   8.5e+03      46      55 ..     164     173 ..     161     177 .. 0.76
   4 ?    2.5   0.0     0.039   1.4e+02      42      60 ..     217     235 ..     199     237 .. 0.83
   5 ?   -3.3   0.0       2.5   8.8e+03      46      60 ..     459     473 ..     456     475 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.79
      HTH_15 46 grsveevrqaLaalp 60
                + ++  vr+aLaa +
  KIR61300.1 84 AHTDPAVRAALAAHA 98
                455666777777654 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0026
      HTH_15  30 LakGepVtveeLAaatgrsveevrqaLa 57 
                 La+ + V+ + LA  +g ++ +vr+ La
  KIR61300.1 121 LAERDDVPADLLARLAGDPDPQVRATLA 148
                 888899********************98 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.4
      HTH_15  46 grsveevrqa 55 
                   +v+evr+a
  KIR61300.1 164 TDPVDEVRAA 173
                 5699***987 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.039
      HTH_15  42 AaatgrsveevrqaLaalp 60 
                 A+ +g ++ +vr+ La  p
  KIR61300.1 217 AQLAGDPDHQVRRQLAEHP 235
                 55689**********9887 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 2.5
      HTH_15  46 grsveevrqaLaalp 60 
                 + + e+v++a a+ p
  KIR61300.1 459 ADPNERVAHATATAP 473
                 668899999887766 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2     0.072   2.6e+02      11      46 ..      94     117 ..      82     122 .. 0.62
   2 ?    2.1   0.1     0.083     3e+02      32      49 ..     131     148 ..     128     149 .. 0.82
   3 ?    8.9   0.0   0.00059       2.1      35      51 ..     161     177 ..     155     179 .. 0.90
   4 ?    3.9   1.5     0.022        78      18      46 ..     222     255 ..     199     259 .. 0.65
   5 ?   -1.8   0.0       1.4   4.9e+03      34      47 ..     347     360 ..     339     363 .. 0.74
   6 ?   -1.4   0.0         1   3.7e+03      33      48 ..     402     417 ..     393     419 .. 0.78
   7 ?    2.5   0.1     0.061   2.2e+02      33      51 ..     427     446 ..     413     446 .. 0.77
   8 ?   -1.4   0.2         1   3.6e+03      35      51 ..     456     472 ..     455     472 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.072
     HEAT_EZ  11 LGrlaggepellqplvpeilpaLlalLnddsdeVRa 46 
                 L+   +    + +++  e+  +L+     d++++R 
  KIR61300.1  94 LA---A----HARDAPRELYEQLI-----DDPDTRV 117
                 33...3....34444448888888.....6665543 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.083
     HEAT_EZ  32 aLlalLnddsdeVRaaAa 49 
                 +L++l  d+++ VRa+ a
  KIR61300.1 131 LLARLAGDPDPQVRATLA 148
                 5778889*******9855 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00059
     HEAT_EZ  35 alLnddsdeVRaaAaga 51 
                 alL+d+ deVRaaA+ +
  KIR61300.1 161 ALLTDPVDEVRAAACAT 177
                 799************75 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.022
     HEAT_EZ  18 epel....lqplvpeilpaLlalLnddsd.eVRa 46 
                  p++    +  ++p++ p+   lL+dd++ +VR 
  KIR61300.1 222 DPDHqvrrQLAEHPQLPPPVRDLLTDDPSaNVRV 255
                 4444332233389999999999999988889985 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 1.4
     HEAT_EZ  34 lalLnddsdeVRaa 47 
                  +lLnd ++ VR++
  KIR61300.1 347 TRLLNDNDSGVRTT 360
                 46778888888875 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 1
     HEAT_EZ  33 LlalLnddsdeVRaaA 48 
                 L +l +d++++ R  A
  KIR61300.1 402 LRRLATDPDPRMRSLA 417
                 5667799998998766 PP

  == domain 7  score: 2.5 bits;  conditional E-value: 0.061
     HEAT_EZ  33 LlalL.nddsdeVRaaAaga 51 
                 L+ +L +d+++++R a+a++
  KIR61300.1 427 LAERLaTDPDSMIRHAVARH 446
                 6666636666699****996 PP

  == domain 8  score: -1.4 bits;  conditional E-value: 1
     HEAT_EZ  35 alLnddsdeVRaaAaga 51 
                 alL d++ +V  a+a a
  KIR61300.1 456 ALLADPNERVAHATATA 472
                 7899******9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 3045.39
//
Query:       KIR61301.1  [L=86]
Description: hypothetical protein TK50_26715 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 657.81
//
Query:       KIR61302.1  [L=225]
Description: hypothetical protein TK50_26730 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-15   57.4   0.0    1.6e-15   57.0   0.0    1.1  1  DUF416    Protein of unknown function (DUF416)


Domain annotation for each model (and alignments):
>> DUF416  Protein of unknown function (DUF416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   9.1e-20   1.6e-15       4     177 ..      36     213 ..      33     220 .. 0.89

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 9.1e-20
                 HHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHTTS---GGGHHH..HHHHHHHH---GGG--STTHHHHHHHHHHHHHHH CS
      DUF416   4 krlekLeswqqlaFaaaLcErmlPnYklFceatefgdakvlrnildlvWelltvkkakinfea..qlekleeiiPdledfdfygvypAlDacvalsall 100
                 + l++L +w+++aFa++ +E ++P Y  F+e +e gd   +r  +d+vW  l+  ++   +++    + + e +P  e+ +   + +A Da+ +l  ll
  KIR61302.1  36 EGLANLAPWHRVAFAVSCVEVLIPAYLKFSELEEAGDRVLVRMWVDAVWSGLQGGNMSSAISElpSPDSIKELLPVQEEWNEW-APQAEDAIASLVYLL 133
                 6799************************************************9999888877622457889999998888855.789************ PP

                 HHHH-TTS--HHHHHHHHHHHHHHHHHHHH-TT-...-HHH.HHH-HHHHHHHHHHHHHHHHHHH--SSHHHHHHHHHHHH CS
      DUF416 101 qalaeedleeavevsklslntVaafieaqeeeel...seee.lkehplieeeldvqeellrlleeveardkelikelrqel 177
                 ++l++++ + av v++ + +  ++f   +++ e+   ++ e l +   i+ el+ q ++l +l+    +d++ i++lr+ +
  KIR61302.1 134 ELLRDDNVDLAVYVAERAYAAADEFEAREQDLEVigsDDSEvLLQASSIQAELQRQVDVLSALQ-DPVADSSIIAGLRAAA 213
                 ***************************999988744344446888*******************.8999*********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1455.22
//
Query:       KIR61303.1  [L=297]
Description: hypothetical protein TK50_26740 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-13   51.3   1.7    2.7e-13   50.5   0.1    2.0  2  PrgI      PrgI family protein


Domain annotation for each model (and alignments):
>> PrgI  PrgI family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.1   1.5e-17   2.7e-13       2      79 ..      13      90 ..      12     100 .. 0.78
   2 ?   -0.5   0.1      0.12   2.2e+03      20      42 ..     231     253 ..     230     272 .. 0.76

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.5e-17
        PrgI  2 VpkDiseyeekiffgLtlRQliflvlallvaiglylllrafleelasvlvillavPvaalgfy....kkdglplekylkaii 79
                Vp+D++e +++i+fgLt+RQl+++++++l+a+g+y  + ++l   + v+ i++ v v+a +++    ++dglpl+ +l++ +
  KIR61303.1 13 VPADVNE-PDRIAFGLTFRQLGIVGGVGLAAFGVYRRFGHLL---PPVAWIVAGVVVFAGAVVvalgRRDGLPLDVWLRHGF 90
                9******.**********************************...44444444333333333334559**********9865 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.12
        PrgI  20 RQliflvlallvaiglylllraf 42 
                 RQ++ +v+++ +a +++ +l+++
  KIR61303.1 231 RQVLAVVIGAYAADTAVRALSGV 253
                 99999999998776666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2231.65
//
Query:       KIR61304.1  [L=303]
Description: hypothetical protein TK50_26745 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.61    9.8  25.8       0.12   12.1  21.1    2.2  2  TrbL             TrbL/VirB6 plasmid conjugal transfer protein
        5.2    6.8  10.4          2    8.1   5.7    2.7  2  RhodobacterPufX  Intrinsic membrane protein PufX


Domain annotation for each model (and alignments):
>> TrbL  TrbL/VirB6 plasmid conjugal transfer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.22   1.9e+03     109     125 ..      12      28 ..       2      41 .. 0.46
   2 ?   12.1  21.1   1.4e-05      0.12      44     182 ..      98     225 ..      59     258 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.22
        TrbL 109 wlgvlllflvaavvlll 125
                 wl+  +++l+++ + +l
  KIR61304.1  12 WLAETVVALLGGLLAFL 28 
                 22222222222222222 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.4e-05
        TrbL  44 yativvdsfaglpeaaggallssagsstsptldqlgldvadkl.leqasslsffsniggilagllawlgvlllflvaavvlllakialalllalgpifI 141
                 +a  ++ ++ ++++a++ ++++ a+       ++++++++++  ++++ ++       + l +++ +l+v+l+f+++++  +     l +l+++gp+ +
  KIR61304.1  98 FAVPLTGALIDVANALTVSMAGEAAP------TTVAVTFVQARiSSAMTDEG-----TALLTAVIGLLIVVLMFMLVGGW-IARVGVLVVLAGIGPVAL 184
                 33333334444444444443333322......22222222222023333333.....33334444444444444444443.33334567899******* PP

        TrbL 142 afllFkaTrdlFenWlgqvlsyalllvllavivglgsglfa 182
                 a+   ++T+  +e W + +l+   ++ l av+++ g++l+ 
  KIR61304.1 185 ACYATPWTQAAAELWWRSLLGCLATPTLQAVVFSAGIDLLI 225
                 *************************************9987 PP

>> RhodobacterPufX  Intrinsic membrane protein PufX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.7   0.00023         2      13      51 ..     150     188 ..     142     195 .. 0.87
   2 ?   -1.6   0.1      0.23   2.1e+03      33      56 ..     247     270 ..     246     277 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00023
  RhodobacterPufX  13 ksrLradvlllMlkGAgyAavfvlvllfllvalaliGrl 51 
                      ++ L + vl+ Ml G   A v+vlv+l +++ +al+  +
       KIR61304.1 150 VIGLLIVVLMFMLVGGWIARVGVLVVLAGIGPVALACYA 188
                      6778899************************99987655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.23
  RhodobacterPufX  33 vfvlvllfllvalaliGrlLPeqs 56 
                      ++v+vl+  + +  l+ r   eq 
       KIR61304.1 247 LVVVVLWTTVKIPTLMRRFVGEQG 270
                      578999988877776666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2260.30
//
Query:       KIR61305.1  [L=95]
Description: hypothetical protein TK50_26750 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-05   23.2   4.4    7.4e-05   22.9   4.4    1.2  1  TrbC      TrbC/VIRB2 family
  ------ inclusion threshold ------
      0.017   14.7   2.2      0.019   14.6   2.2    1.2  1  SseC      Secretion system effector C (SseC) like family
      0.017   15.1   0.4      0.022   14.8   0.4    1.2  1  Sdh_cyt   Succinate dehydrogenase/Fumarate reductase transmem


Domain annotation for each model (and alignments):
>> TrbC  TrbC/VIRB2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   4.4   1.2e-08   7.4e-05      20      93 ..       4      83 ..       1      89 [. 0.85

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.2e-08
        TrbC 20 vllllaspalAqaaggdpvetvlqnivdfltgplakviatiaiivaGimlafgrls.......wrtlvmvviGiviifgAs 93
                +l++l++ a  q    +++++v+ ni+d++ g ++ ++at+ +++ G+ +++ + +       ++ +   +iG ++++ ++
  KIR61305.1  4 TLVVLSDLAAVQPLAANSISQVISNITDWIMG-IIALVATMFLVIGGLRYMAAGGDpaqveqaKGNFKSALIGYALAVLSP 83
                6778888888887777****************.******************999888888888888888888888877665 PP

>> SseC  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   2.2   3.2e-06     0.019      58      92 ..      25      56 ..      18      82 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.2e-06
        SseC 58 iigkIfGwilaivsvvagalkvgaslllaavgvAg 92
                +i+ I++wi++i+++va  + v+ +l     ++Ag
  KIR61305.1 25 VISNITDWIMGIIALVATMFLVIGGLRY---MAAG 56
                799**********************887...4443 PP

>> Sdh_cyt  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.4   3.7e-06     0.022      43     115 ..       6      80 ..       2      86 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.7e-06
     Sdh_cyt  43 wlllalslsspesfarvvallaspiklilllllllallyHllnGiRhllw..D.lglglel.esarksalavlalav 115
                 ++l +l++++p + + ++++++++   i+ +++l+a+++ ++ G+R+++   D     +e+ + + ksal+ +alav
  KIR61305.1   6 VVLSDLAAVQPLAANSISQVISNITDWIMGIIALVATMFLVIGGLRYMAAggDpA--QVEQaKGNFKSALIGYALAV 80 
                 44778888899999999999999555555588899999999*******9933322..22331333344444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       861  (0.0480228); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 716.38
//
Query:       KIR61306.1  [L=605]
Description: hypothetical protein TK50_26760 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-22   79.8   0.0    4.8e-22   79.2   0.0    1.3  1  RNase_T   Exonuclease
    4.7e-05   23.1  14.6    0.00032   20.4  14.6    2.5  1  DUF2510   Protein of unknown function (DUF2510)
  ------ inclusion threshold ------
      0.089   13.0   3.9      0.062   13.5   0.8    2.4  2  TPR_9     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.0   8.1e-26   4.8e-22       1     165 []      26     178 ..      26     178 .. 0.95

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 8.1e-26
                 EEEEEEESSSTTCTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETTTCEEEESS CS
     RNase_T   1 vviDlEttgldakekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahnaafdvgfl 99 
                 vv+D+Ettgl+    d+i+eia ++++gg+  + ++  ++v+  ++    +  t +++it +ml +ap+f +v+ ++ + l+ +a+ vahna+f  gf+
  KIR61306.1  26 VVVDVETTGLSS-RSDRIVEIALVRVEGGR--VVDEWATLVDAGRD----PGPTFVHHITADMLSGAPTFADVAGDILSRLD-GAVAVAHNARFEEGFI 116
                 89**********.8****************..7888*********9....9999****************************.**************** PP

                 HHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHCHHHHHHHHHTTCHSSSSTSSHHHHHHHHHHHH CS
     RNase_T 100 raadkrilkkevpkrnqfldtlildkatlkelartsldklaeklgleedgraHrAldDaeataklf 165
                  +++ r +  ++p   + ++tl+l++++l+      l   ++ +g+e +  aH+Al D++ata+l+
  KIR61306.1 117 AQEFARAGIDTAP--LPAVCTLRLARQVLAAPNF-QLVSCCAAYGIELHD-AHTALGDTRATAQLL 178
                 *******999887..8899*********976665.*************99.6***********986 PP

>> DUF2510  Protein of unknown function (DUF2510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4  14.6   5.4e-08   0.00032       1      27 [.     455     480 ..     455     494 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 5.4e-08
     DUF2510   1 pGWYpDPsgtpgllRyWDGarWTehta 27 
                 +GWY DPsg     R+WDG++WTe+ +
  KIR61306.1 455 AGWYLDPSGRWT-YRFWDGTGWTERAS 480
                 8******88877.***********876 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.4   8.3e+03      16      29 ..     173     186 ..     164     190 .. 0.43
   2 ?   13.5   0.8     1e-05     0.062      35      69 ..     558     594 ..     534     598 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.4
       TPR_9  16 avverllllaPddp 29 
                 a++++l  l  d+p
  KIR61306.1 173 ATAQLLTRLLADAP 186
                 33333333333333 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1e-05
       TPR_9  35 RGlllaqlGclsaAladLeayl..alapdapdaeair 69 
                  +++la+lG+++a++a Le+++  ++ap a  a++++
  KIR61306.1 558 AAIILARLGDPAAEVAVLERFArqRHAPGATPARLLE 594
                 3689******************888889888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4190.71
//
Query:       KIR61307.1  [L=151]
Description: hypothetical protein TK50_26765 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1180.79
//
Query:       KIR61308.1  [L=136]
Description: hypothetical protein TK50_26770 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-17   61.1   0.0    1.2e-16   60.7   0.0    1.2  1  CdiA_C    Contact-dependent growth inhibition CdiA C-terminal


Domain annotation for each model (and alignments):
>> CdiA_C  Contact-dependent growth inhibition CdiA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   6.4e-21   1.2e-16       1      81 []      50     129 ..      50     129 .. 0.94

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 6.4e-21
      CdiA_C   1 ktPDylinGevfDvKspt.sgngkniisnilkkakk.Qaknivlnlrdsdlsieeikegieralkwpkkglkeliiikkdgki 81 
                 k PDyl++G+vfD++sp   ++++n++s++ +k  + Q+ ++v+nl+d++ +   + +++     wp++glkel ++k dg+i
  KIR61308.1  50 KDPDYLVEGHVFDCYSPAaHTSVRNVWSQVREKIDDeQTQRVVVNLQDWEGDPAALRRQFDD---WPIDGLKELAVVKPDGTI 129
                 68****************888899*********999****************8888887775...***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 953.48
//
Query:       KIR61309.1  [L=175]
Description: hypothetical protein TK50_26775 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.43   10.0   8.4       0.46    9.9   7.6    1.5  2  DUF1176   Protein of unknown function (DUF1176)
       0.79    9.5   9.0        1.3    8.8   9.0    1.7  1  TrbI      Bacterial conjugation TrbI-like protein


Domain annotation for each model (and alignments):
>> DUF1176  Protein of unknown function (DUF1176)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   7.6   5.1e-05      0.46      97     181 ..      27     113 ..      10     155 .. 0.77
   2 ?   -1.8   0.0      0.18   1.6e+03      29      47 ..     143     162 ..     134     169 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 5.1e-05
     DUF1176  97 al.kkaskielkaggkrvelSlaGlsAaLlkmDeaQgRvgtvtAlvkkGnkpesaVpp.apaapvikaaeasaapkrelseaelaal 181
                 a+ ++a++i+l+a++  +    aG++ +   +   Qg +g+ +A v +++ ++ aVp+ a+a  +i a ++++++ +  +e+++a++
  KIR61309.1  27 AVdRQAQEIALRAAAAGFAGVAAGIARVRATVSTIQGGLGSLAAAVGEATTAAAAVPRqAAAQETIAALAPVQQRITAARESATATI 113
                 44268999*****999999999************************************66666667777777776333333333333 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.18
     DUF1176  29 ap.vsllltReAgadapvsl 47 
                 ++ ++ll+ R+A a+++v++
  KIR61309.1 143 KQvLVLLVQRAATAGQAVEA 162
                 44378888999999888876 PP

>> TrbI  Bacterial conjugation TrbI-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   9.0   0.00015       1.3      91     157 ..      21      86 ..       8     173 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00015
                 -HHHHHHHHHHHHHHHSSS-SEEEEES---EEEE------------HHHHHHHHT-TT-BHHHHHHH CS
        TrbI  91 raGlrGrvdnhfgkrfgaalllsllsgagellnaassssttsstgtqslaaavgegasqalsqvaqr 157
                 ++Gl + vd++  ++  +a+++++++ a+ ++  + + st+++  + slaaavge+++ a+    q 
  KIR61309.1  21 AQGLTAAVDRQAQEIALRAAAAGFAGVAAGIARVRATVSTIQGGLG-SLAAAVGEATTAAAAVPRQA 86 
                 58***************************99977777777776666.55555555555554433222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1470.57
//
Query:       KIR61310.1  [L=279]
Description: DNA methylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-18   66.4   0.0    1.2e-13   51.3   0.0    2.1  2  N6_N4_Mtase      DNA methylase
    3.4e-07   30.2   0.0    4.8e-06   26.4   0.0    2.1  1  UPF0020          Putative RNA methylase family UPF0020
     0.0012   19.4   0.1        1.2    9.8   0.0    2.3  2  Methyltransf_11  Methyltransferase domain
     0.0042   17.8   0.1      0.067   13.9   0.1    2.3  2  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.056   12.8   0.1      0.079   12.3   0.1    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm


Domain annotation for each model (and alignments):
>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   3.3e-17   1.2e-13     147     229 ..       6      90 ..       2      92 .. 0.90
   2 !   13.3   0.0   1.4e-05      0.05       2      60 ..     129     204 ..     128     250 .. 0.82

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 3.3e-17
                  --BSEEE-SCCCTTSTTS-CHH...----SS---HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHH CS
  N6_N4_Mtase 147 kiediWdlseiqsnekkskgdt...kkkHpaqkPvallerlIklstkkgdivlDpFaGSGtTavaakelgrkfiGieieeeyvela 229
                  +++ +W l++ q+ + +++g +   +  Hp ++   l+ ++I ++t +gd+v+Dp +G G T+v+a+ lgr+ +Gi+ie++y  la
   KIR61310.1   6 PVTSVW-LTCQQPARDQRRGRYvpeSSSHPGKMLPHLAAHAISSYTAPGDLVFDPMCGAGITLVEAMHLGRQGVGIDIEPRYTALA 90 
                  78899*.77777777777777799999*******************************************************9876 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.4e-05
                  EEEEE--SSSSSCS...................GCCGCCHHHHHHHH...HHHHHHHHHHHEEEEEEEEEEE-CCC CS
  N6_N4_Mtase   2 dlivtdpPYntgkdy..............endeqyeeedsyeeylef...lekvlkevrrvLkddgsifiniddse 60 
                   l++t+pPY+ g  +                ++ + ++  y +++++   +  +l+  +r+L ++g+++i +   +
   KIR61310.1 129 GLVLTSPPYGRGTHGlvratsagvrkrdhVYGDRERGNLAYGGWSRLfdgFAAILAASYRLLRPGGIVVITCRPVR 204
                  589**********************888777788888888999*999333445566779***********997665 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.4e-09   4.8e-06       8     135 ..      33     141 ..      29     148 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.4e-09
                 ---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHH...HHHTT-GG CS
     UPF0020   8 gpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareN...aekagvgd 103
                 +p+++ + LAa  +  +   pg+  +DPmCG G  l+Ea  lg++ +                          g+D+++r+++ a +N   a + g ++
  KIR61310.1  33 HPGKMLPHLAAHAI-SSYTAPGDLVFDPMCGAGITLVEAMHLGRQGV--------------------------GIDIEPRYTALAASNvalAASQGATG 104
                 78888888886543.566789************************99..........................***************33334457778 PP

                 GEEEEE--GGG--.....STTS---EEEE-------- CS
     UPF0020 104 liefsqadaakLr.....lkegevdvivtnpPYGerl 135
                 + ++ + da+ L         g v++++t pPYG+ +
  KIR61310.1 105 SAQVFTGDATGLLglvpaSVVGRVGLVLTSPPYGRGT 141
                 8999999***99887665556799**********976 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00033       1.2       4      41 ..      60      97 ..      57     122 .. 0.82
   2 !    7.4   0.0     0.002         7      78      96 .]     180     198 ..     173     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00033
                     T-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHH CS
  Methyltransf_11  4 GcGtGrlaealakrgarvvgvDlskemlklakekasee 41
                      cG+G+ + + ++ g++ vg+D+ ++ ++la +++  +
       KIR61310.1 60 MCGAGITLVEAMHLGRQGVGIDIEPRYTALAASNVALA 97
                     5***************************9998887655 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.002
                      HHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  78 ekalkeiaRvLkpgGllvi 96 
                      +++l+  +R+L+pgG++vi
       KIR61310.1 180 AAILAASYRLLRPGGIVVI 198
                      678999**********986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   1.9e-05     0.067       1      57 [.      56     115 ..      56     125 .. 0.81
   2 ?    1.4   0.0      0.15   5.5e+02      83      97 .]     180     194 ..     173     194 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.9e-05
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHH...TTT..TEEEEESBCCG CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraee...egl..nvefvqgdaed 57 
                      v d  cG G ++ ++ + +   + +g+Di +++ + a+++++    +g+  ++++ +gda+ 
       KIR61310.1  56 VFDPMCGAGITLVEAMHLG--RQGVGIDIEPRYTALAASNVALaasQGAtgSAQVFTGDATG 115
                      67888**********9985..9****************988654444447778888888765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.15
                      HHHHHHHHHHEEEEE CS
  Methyltransf_25  83 ekalkeiarvLkpgG 97 
                      +++l+  +r+L+pgG
       KIR61310.1 180 AAILAASYRLLRPGG 194
                      5789999*******9 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.2e-05     0.079     153     207 ..      44      97 ..      39     114 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.2e-05
        PrmA 153 ealeklvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelN 207
                 +a+ ++  +g+ v+D  +G+Gi  + a+ Lg +  v++Di++     a++N++l 
  KIR61310.1  44 HAISSYTAPGDLVFDPMCGAGITLVEAMHLGRQG-VGIDIEPRYTALAASNVALA 97 
                 67889999***********************876.6***************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2086.20
//
Query:       KIR61311.1  [L=116]
Description: hypothetical protein TK50_26800 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 885.08
//
Query:       KIR61312.1  [L=165]
Description: hypothetical protein TK50_26805 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1164.42
//
Query:       KIR61313.1  [L=176]
Description: hypothetical protein TK50_26810 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1307.15
//
Query:       KIR61314.1  [L=139]
Description: hypothetical protein TK50_26820 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 953.28
//
Query:       KIR61315.1  [L=114]
Description: hypothetical protein TK50_26825 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.19   11.9   0.0    1.3  1  DUF2883   Protein of unknown function (DUF2883)


Domain annotation for each model (and alignments):
>> DUF2883  Protein of unknown function (DUF2883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.1e-05      0.19      22      51 ..      17      46 ..       6      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.1e-05
     DUF2883 22 lmlelrtvgpsfglefrfqdtprrgknytq 51
                l  elrtv    g ef + d+  +g+ y+ 
  KIR61315.1 17 LRAELRTVEQQAGYEFEYADSVPQGRRYAS 46
                5679******************9**99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 869.07
//
Query:       KIR61316.1  [L=430]
Description: hypothetical protein TK50_26835 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3036.63
//
Query:       KIR61317.1  [L=96]
Description: hypothetical protein TK50_26840 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 708.00
//
Query:       KIR61318.1  [L=380]
Description: hypothetical protein TK50_26850 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00019   21.1   4.6    0.00033   20.2   4.6    1.6  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   4.6   1.8e-08   0.00033     115     233 .]     114     295 ..      12     295 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.8e-08
                    E..................CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH................ CS
                    x..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
  Exo_endo_phos 115 i..................ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap................ 176
                    +                  a    h ++++ ++++++ ++++    +++pviv GD+N+  ++ + ++++   +a+ +++                
     KIR61318.1 114 VfairgtgepgtpdsrttfAAAVTHWDPHCGIRRRQQAALLDRYGTTDMPVIVGGDLNS--TASGPHLPQRDWAAAGHRAraqkarrhpdgtwtad 207
                    0444555555555566667778889999*******************************..66666666666666666667888888888777776 PP

                    ..........H.......................SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    ..........x.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 177 ..........v.......................glyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrrealtlSDH 233
                              +                       + + +   ++++    +gg  +D  la++++++++       ++  r    ++SDH
     KIR61318.1 208 tdavdhligrWdpethhrtdgcgfhalaelartaNPHIPLLPTVNHGIDAGGGLLIDWLLANDTMRPHVDPGSYRVHVPAR--QPYPSDH 295
                    66666655550555555566666777888889999999999999999999999999******9777776665555555555..6899999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2623.49
//
Query:       KIR61319.1  [L=75]
Description: hypothetical protein TK50_26855 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-08   34.1   0.1      4e-08   33.5   0.1    1.3  1  HA        Helicase associated domain
  ------ inclusion threshold ------
      0.058   13.3   0.3      0.068   13.0   0.3    1.2  1  DUF3670   SNF2 Helicase protein


Domain annotation for each model (and alignments):
>> HA  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.1   4.5e-12     4e-08      33      63 .]       2      32 ..       1      32 [. 0.97

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 4.5e-12
          HA 33 sLgkWvakqRqqykkgklteerielLealGf 63
                +L+kW++kqR+++++g+lt+ +i++L+a+G+
  KIR61319.1  2 NLAKWLSKQRAARRAGTLTDRQIAALDAIGM 32
                79****************************8 PP

>> DUF3670  SNF2 Helicase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   7.5e-06     0.068      15      55 ..      18      59 ..       7      73 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.5e-06
     DUF3670 15 efLkeaaeaLeaaGvgVllPrwlkkrarprltlklavkgp...a 55
                ++ +++++aL a G++  +P+++   +++++t++ ++++p   +
  KIR61319.1 18 TLTDRQIAALDAIGMQWEIPSGW--ARTRQVTARRRTSTPdpaP 59
                56677899***************..9999999998877774431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 566.64
//
Query:       KIR61320.1  [L=424]
Description: hypothetical protein TK50_26860 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-36  123.2   5.7      4e-16   59.1   0.1    3.6  4  HA          Helicase associated domain
    3.8e-05   24.0   0.0    6.5e-05   23.3   0.0    1.3  1  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> HA  Helicase associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.3   1.1e+04       4      18 ..     133     147 ..     132     153 .. 0.76
   2 !   59.1   0.1   4.4e-20     4e-16       4      63 .]     201     261 ..     199     261 .. 0.95
   3 !   43.4   0.1   3.5e-15   3.1e-11       5      62 ..     270     328 ..     266     329 .. 0.94
   4 !   21.8   0.0     2e-08   0.00018       5      39 ..     337     372 ..     333     373 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.3
          HA   4 dWeerleeLkeykae 18 
                 +W++ l+ L++ +a+
  KIR61320.1 133 RWATLLQTLRALRAH 147
                 699999999887765 PP

  == domain 2  score: 59.1 bits;  conditional E-value: 4.4e-20
          HA   4 dWeerleeLkeykaehGhlnvP.ekteenpsLgkWvakqRqqykkgklteerielLealGf 63 
                 dW  ++ +L++++a hGh++vP     ++++L +Wv +qR+ +k+g+l ++r++ L+alGf
  KIR61320.1 201 DWMVGYGALRDFHADHGHTRVPtGHLRQGVRLDRWVFRQRADHKAGRLAQDRVDHLNALGF 261
                 7*********************944578********************************9 PP

  == domain 3  score: 43.4 bits;  conditional E-value: 3.5e-15
          HA   5 WeerleeLkeykaehGhlnvP.ekteenpsLgkWvakqRqqykkgklteerielLealG 62 
                 W+++l  +++++aeh hl+vP     ++++L  W+ +qR++++ g+l + r+++L+alG
  KIR61320.1 270 WARGLTYARRFHAEHVHLHVPhGHVLDGFDLYTWLWQQRAARRGGTLPAGRVADLDALG 328
                 *********************955679*******************************9 PP

  == domain 4  score: 21.8 bits;  conditional E-value: 2e-08
          HA   5 WeerleeLkeykaehGhlnvP.ekteenpsLgkWva 39 
                   ++++++++++a hGhl+vP   t +  +L +W++
  KIR61320.1 337 HHDGYAAARRFHADHGHLDVPfGHTVNAIDLYRWLS 372
                 5689******************778999******96 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   7.2e-09   6.5e-05      41     110 ..      28     100 ..       9     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 7.2e-09
                 STEEEESTTSTHHHHHHHHHHHH...TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSST CS
  Helicase_C  41 ikvavlhgelpqnereeileqfn...kgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRa 110
                 ++v  ++g+ +  +r+  l++     ++  +vL   + +++G+d+p v+ ++   +++++ +++q +GR+ R 
  KIR61320.1  28 LTVGHVDGTQSITQRRLHLRRLAdppEDGWTVLSNARCLGEGVDVPAVDAIVLTAPKESPVDVVQVVGRAVRR 100
                 6677788888888888888888766455566****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3443.62
//
Query:       KIR61321.1  [L=320]
Description: hypothetical protein TK50_26865 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-12   48.3   0.0    3.3e-12   46.7   0.0    1.7  1  ResIII     Type III restriction enzyme, res subunit
    1.1e-06   28.5   0.0    4.4e-06   26.6   0.0    1.8  1  DEAD       DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.012   15.3   0.0        1.7    8.3   0.0    2.2  2  SWI2_SNF2  SWI2/SNF2 ATPase
      0.019   15.2   0.0       0.29   11.4   0.0    2.7  2  AAA_22     AAA domain
      0.077   12.3   0.5       0.17   11.2   0.1    1.7  2  MipZ       ATPase MipZ


Domain annotation for each model (and alignments):
>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   9.3e-16   3.3e-12       4     170 ..       7     189 ..       5     190 .. 0.73

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 9.3e-16
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHG..................GGGTGG.... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleef..................kkflseayke 84 
                 lr yQ ea+++++++l   +  rg + +a+G+GK++va+++  rl  +g    +++ vp+++ll qtl+ +                  +        +
  KIR61321.1   7 LRGYQREAVDAVVAALV--DGGRGQVRAACGSGKSVVAVHVGVRLCPSGL---VVVAVPSLTLLAQTLNVWvragaaarvlavcgdggvA--------D 92 
                 899*************6..999*************************965...9999************995555555555444443331........1 PP

                 ........GEEEESSS-B--............-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T.TTHHH...HHT---SEEEEEE CS
      ResIII  85 ........igkkvsgdkkka.....kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk.swrei...lekfkeavllglT 166
                         ++ ++++  + +     ++ +++  +++++t  s+d            +   + d++i+DEaH++++ + ++ ++    e++++  +l+++
  KIR61321.1  93 eavrvvdlTCPVTTDAAQ-IagwarQHDAASGLSLVLVTHRSADTVG-----RGLNAAGVAADLLIVDEAHHTAGWAgKHGALvhrDEHLPARRRLYMS 185
                 222223323333333333.2477544455566777777777777766.....77899999999***********974433332366999********** PP

                 SS-S CS
      ResIII 167 ATpe 170
                 ATp+
  KIR61321.1 186 ATPR 189
                 ***6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.2e-09   4.4e-06       4     169 ..      11     188 ..       8     193 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.2e-09
                 HHHHHHHHH....TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET.TSSHHHHHHHH... CS
                 xxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx... RF
        DEAD   4 Qaeaiplil....gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig.gvaardqlskl... 94 
                 Q+ea+++++    +gg   v+a+ GsGK+ +++   ++        +   +++ +P+  L  qtln + + +     rvl++ g g  a++ ++++   
  KIR61321.1  11 QREAVDAVVaalvDGGRGQVRAACGSGKSVVAVHVGVRL------CPSGLVVVAVPSLTLLAQTLNVWVRAGAA--ARVLAVCGdGGVADEAVRVVdlt 101
                 6666666555555899999************99999944......57779**********************96..46666666322222333333445 PP

                 ...................HTTCSEEEEEHHHHHHHHHCTSSHCTTE..EEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSB CS
                 ...................xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  95 ...................dngvdivvgtpgrlddllstgklnlsqv..rflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATl 169
                                     +g+ +v+ t+   d  +  + ln   v   +l++DEa+    +  +++   +++       +    r+ + +SAT+
  KIR61321.1 102 cpvttdaaqiagwarqhdaASGLSLVLVTHRSADT-VG-RGLNAAGVaaDLLIVDEAHHTAGW-AGKHGALVHRDE-----HL-PARRRLYMSATP 188
                 55555555555555554323668888888866665.53.456877775588************.444444444444.....12.35679999*997 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0051        18       1      42 [.      10      49 ..      10      65 .. 0.85
   2 ?    8.3   0.0   0.00047       1.7     123     186 ..     150     230 ..     140     253 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0051
   SWI2_SNF2  1 qQyravekavervkegdrkgGviWHtqGSGKsltmvflakkl 42
                +Q  av ++v+++ +g    G +    GSGKs+  v +  +l
  KIR61321.1 10 YQREAVDAVVAALVDG--GRGQVRAACGSGKSVVAVHVGVRL 49
                5888999999999985..7899***********999876655 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00047
   SWI2_SNF2 123 ivlvDEaHRsqyg....elakklrkalpnaafigFTGTPilk.....kd........kktkevFgeyidkYtikeaveDga 186
                 +++vDEaH +       +   +  ++lp   ++ +  TP l      ++         + ++vFg +  +Y++++a++Dg 
  KIR61321.1 150 LLIVDEAHHTAGWagkhGALVHRDEHLPARRRLYMSATPRLLparlrTSgdgddvlsMDETAVFGPVCYTYSFAQAISDGW 230
                 57999999997433333444455689999999999999988744554105566677666789*****************85 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.1e-05      0.29      19     103 ..      63     159 ..      28     183 .. 0.75
   2 ?   -0.5   0.0       0.4   1.4e+03     118     134 ..     275     295 ..     233     297 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.1e-05
      AAA_22  19 Ttllrrlleqldeeakaee............erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav.ielliiDEaqhl 103
                 T+l+++l  +  + a+a +            e ++vv  t+p+ t+ ++++ +  +    ++ +  l +++  +++ + l+a++v   lli+DEa+h 
  KIR61321.1  63 TLLAQTLNVWVRAGAAA-RvlavcgdggvadEAVRVVDLTCPVTTDAAQIAGWARQHDAASGLSLVLVTHRSADTVGRGLNAAGVaADLLIVDEAHHT 159
                 45555555554333333.2477777777777888999999999998888888887776666666555666666777777777777888********95 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.4
      AAA_22 118 l....srkgvqliLvGtpelr 134
                 l    +++g++ iLv tp++r
  KIR61321.1 275 LvraaAEFGLRRILVFTPGCR 295
                 033345889999999999877 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   4.6e-05      0.17      10      35 ..      34      59 ..      31      80 .. 0.81
   2 ?   -3.1   0.0       1.1   3.8e+03     116     139 ..     128     151 ..     123     158 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.6e-05
                TTSSHHHHHHHHHHHHHTTT--EEEE CS
        MipZ 10 GGsGksttavhvavaLlkkGarvaai 35
                 GsGks +avhv v L  +G+ v a+
  KIR61321.1 34 CGSGKSVVAVHVGVRLCPSGLVVVAV 59
                59******************998776 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.1
                 HHHHHT-SEEEEEEESSHHHHCCC CS
        MipZ 116 rlahsladtlvtPlndsfvdfdll 139
                  ++h  adt+   ln + v  dll
  KIR61321.1 128 LVTHRSADTVGRGLNAAGVAADLL 151
                 578899999999999998888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2297.17
//
Query:       KIR61322.1  [L=226]
Description: hypothetical protein TK50_26875 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-32  111.9   6.9    5.2e-32  111.6   6.9    1.0  1  GPP34     Golgi phosphoprotein 3 (GPP34)


Domain annotation for each model (and alignments):
>> GPP34  Golgi phosphoprotein 3 (GPP34)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   6.9   2.9e-36   5.2e-32       1     201 [.       9     211 ..       9     214 .. 0.93

  Alignments for each domain:
  == domain 1  score: 111.6 bits;  conditional E-value: 2.9e-36
       GPP34   1 LaeellLLalddekgrlsfandnlsyaLaGAiLiELalrgriavdk.......eggrvvvidsrptgdplldealklikaserprsvktwvdllsksvr 92 
                 L +el+ La+dd++grl+ ++++l+++LaGA+Li+L l+ r+ vd         g r++  ++rp+gd + d+al+ ++ ++ ++ ++tw+++ + +++
  KIR61322.1   9 LRDELFMLAHDDDTGRLHVHRRALALGLAGAVLIDLHLAARVIVDPpdptspvPGQRLRLRTDRPVGDLIADAALASLHPTRTAPPLRTWLRHFAVDLY 107
                 679*****************************************99*******99****99999************9998999999************* PP

       GPP34  93 ervakgLvdkGilrtekrr.flglfdmtthpvadtaakeavrrrvraaltsgepadprtaaLvallaaagllenllpdleareaaarakelleefaege 190
                 +r+++gLv +Gilr  ++r + g+ ++ t+ +++ +++  +r+r+  +  ++e++++ taaL++l+a +gl+ +l+ d++   + +r+ ++++      
  KIR61322.1 108 DRTRAGLVTTGILRPHRQRrLAGIAHRDTYLPTHCKWSVVPRARLCYLAQGREQPNDHTAALAGLVAVLGLTTHLYLDNDPTTLTTRLTTIAD------ 200
                 ****************777699********99777777778**************9999********************************44...... PP

       GPP34 191 lvaeavreavr 201
                 +  +avr++ +
  KIR61322.1 201 QHHRAVRDITA 211
                 47888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1572.73
//
Query:       KIR61323.1  [L=337]
Description: acetamidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-29  102.8   0.1    6.7e-18   64.7   0.3    2.3  2  FmdA_AmdA  Acetamidase/Formamidase family


Domain annotation for each model (and alignments):
>> FmdA_AmdA  Acetamidase/Formamidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   9.1e-14   1.6e-09      25     155 ..      25     162 ..      22     163 .. 0.71
   2 !   64.7   0.3   3.7e-22   6.7e-18     194     272 ..     160     237 ..     150     310 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 9.1e-14
   FmdA_AmdA  25 avaevkpgetvkvecldwtdgqikn.ndsaddvrtvdlkkvHeltgPvevegAepGDllvveildievleeaewGytgifdkenggGfl..kdafpeaa 120
                 +va+v+ g++++v + d+++g ++   d ++    +++    +++gP+ ve+AepGD l+v+i  i++ +   wG +++f +  ++  +  + + + + 
  KIR61323.1  25 PVAHVRCGDVLEVFTQDCFGGLVRGpADLPSR--VCRMPYLNPVSGPFFVEDAEPGDTLAVHIAAITPAT--DWGVSTTFPHFGALTSTlrTATLQPPL 119
                 5899*****************99861445554..58888999************************9987..899998887655554444422222222 PP

   FmdA_AmdA 121 kaiwdlegiyassrq........ipgvrfrglphpGllGtaps 155
                  +   + gi +++r            v +++ p++G++G+ap+
  KIR61323.1 120 PERVWVYGIDQQARTvrfqatssDHTVDLPLEPMIGTIGVAPA 162
                 2222233333333334444444444678889999999999996 PP

  == domain 2  score: 64.7 bits;  conditional E-value: 3.7e-22
   FmdA_AmdA 194 ekvaaegartvpprengGnmDiknlsrGskvylPVkveGaklsvGDlHfsqGDGEisfcg.aiemsgvvtlkvevikggm 272
                 + ++ e+  t+ p  +gGn+D  +l+ G +++l V+v+Ga l +GD H+ qG GE   cg a+e++ v tl vev+kg+ 
  KIR61323.1 160 APAGFEARSTLVPDAHGGNLDTPQLRPGVTLFLGVNVHGAMLALGDGHARQGEGEA--CGaAVEIATVTTLLVEVVKGVT 237
                 566779999***********************************************..********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2470.12
//
Query:       KIR61324.1  [L=468]
Description: porin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-39  136.5  41.8    1.4e-39  136.1  41.8    1.1  1  AA_permease_2  Amino acid permease
    2.2e-31  109.0  36.9    3.1e-31  108.5  36.9    1.2  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.1  41.8   1.6e-43   1.4e-39      12     407 ..      29     426 ..      25     444 .. 0.80

  Alignments for each domain:
  == domain 1  score: 136.1 bits;  conditional E-value: 1.6e-43
  AA_permease_2  12 gsvigsgifvkn.....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaasy 102
                    g+v+ ++i +        a+sgg++++ +v+++v ++    ++ ya++  a+p sg +y+y+ +++g +v+fl++w  +++yv+ +++ l+++as 
     KIR61324.1  29 GLVYMVPIAPMAifgsvYAGSGGMVALAYVVGVVALV--FTAFSYAQMVRAFPMSGSVYNYAGRGIGAPVGFLAGWVILLDYVL-VPGLLYLVASV 121
                    5554444433333333236667776666555555554..5899999998779********************************.67888999999 PP

  AA_permease_2 103 llnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpngwpgvllgllivl 198
                     ++a  p++    w+++l   +++++ +++n++gi+ +a ++ ++ +  +l +l+++++++  ++ +g    ++ +   + + gw+ v+++ +i++
     KIR61324.1 122 AMHASVPSVP--VWCWLL---GFVVVNTVVNSVGIRMTALVTRVMLVGELL-VLAVFLVVAAGALAAGKGRLSWEAFYDSDTFGWSVVAGAVSIAV 211
                    9998879973..566766...8899*************************5.7777777777777676666555555556666************* PP

  AA_permease_2 199 wsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavg...gkvvaiivvilialsllg.ai 288
                    +sf Gf++++  +ee +   + v +a+  +l++++vl+++ + ++++ v d +    ++ + ++++f++ +    g+++a++ ++++a++  + + 
     KIR61324.1 212 LSFLGFDGISMLAEESRGgpRQVGRAMAAVLILAGVLFVGQTWLAAMLVADPGRLLAEGDP-AGTAFYDVARvagGGWLATVCAVATAIAWGLpNS 306
                    ***************9987789*****************************9985545433.45666655543328899999998888866557** PP

  AA_permease_2 289 ntavigssrvlealardgvlPrffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphlkrpg 383
                    + a +++sr+l+a+ard+ lP f+a+v+ ++g p++a+ lt +vsl+l+ l++++ ++ +++l+s+ ++g+++ +l+l ++++++   r++ + ++
     KIR61324.1 307 MVAQVATSRLLYAMARDRQLPGFLARVSpRRGVPVNATLLTGVVSLVLG-LYMAGRADGVTVLSSLVNFGAMVAFLVLHVSVVVHHLVRRRSRNWW 401
                    *********************************************6665.677777**********************999999998877776655 PP

  AA_permease_2 384 k.ilvaiigalfllfllvalffppk 407
                    +  ++  +g+ +l +++v +++  +
     KIR61324.1 402 AhLVMPVLGFTVLAYVVVHANIAAQ 426
                    5366777777777777777766554 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5  36.9   3.4e-35   3.1e-31      25     419 ..      47     419 ..      32     447 .. 0.84

  Alignments for each domain:
  == domain 1  score: 108.5 bits;  conditional E-value: 3.4e-35
  AA_permease  25 qaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasiliqfwelvtdlpkawvtgavflv 122
                  +++++ + lay++++v +++++ s ++++ ++p sg+ y+ya r +g  +Gf  G+  l+ +++v +l + +as  ++    v+++p  w + + f+v
   KIR61324.1  47 AGSGGMVALAYVVGVVALVFTAFSYAQMVRAFPMSGSVYNYAGRGIGAPVGFLAGWVILLDYVLVPGLLYLVASVAMHAS--VPSVP-VWCWLLGFVV 141
                  333334589***********************************************************************..*****.********** PP

  AA_permease 123 vlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeegafknfisvfvivvfaftGielvai 220
                  v +++n vg+++ + +  ++++  ++ ++ f++v +  la gk+        +          + ++    +++  + ++++ +i+v++f G+  + +
   KIR61324.1 142 VNTVVNSVGIRMTALVTRVMLVGELLVLAVFLVVAAGALAAGKGRLS-----WE--------AFYDS----DTFGWSVVAGAVSIAVLSFLGFDGISM 222
                  ***************99999999999999999999544444443333.....22........22333....466678999999999999999999*** PP

  AA_permease 221 iagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplinaviltaalssanssl..ysasRvly 316
                  +a+E++   +++ +a+  v+i+ ++++v+ + l+ +lv ++   l ++   +   f  + + +g  ++  ++ av  + a++  ns++  +++sR+ly
   KIR61324.1 223 LAEESRGGPRQVGRAMAAVLILAGVLFVGQTWLAAMLVADPGRLLAEGDPAG-TAFYDVARVAGG-GWLATVCAVATAIAWGLPNSMVaqVATSRLLY 318
                  **************************************99998888877766.555555555554.44555666666667888888874469****** PP

  AA_permease 317 slakdglaP.kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRkalkyqgrsieelgfkaallpl 413
                  ++a+d+ +P + ++++ +rgvP++a ll+ ++sl++ l ++  ++  +v   l+++ a+++++v++++ + +  +R+    +++++  l +   ++  
   KIR61324.1 319 AMARDRQLPgFLARVSPRRGVPVNATLLTGVVSLVLGLYMAGRADGVTVLSSLVNFGAMVAFLVLHVSVVVHHLVRRR--SRNWWA-HLVMPVLGFTV 413
                  *********88888889*********************999999999**************************99999..777777.44444444444 PP

  AA_permease 414 gvilvl 419
                  ++++v+
   KIR61324.1 414 LAYVVV 419
                  444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 3265.91
//
Query:       KIR61325.1  [L=70]
Description: hypothetical protein TK50_26910 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-19   68.8   1.2    3.6e-19   68.6   1.2    1.1  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   1.2     2e-23   3.6e-19       1      53 [.       9      60 ..       9      61 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 2e-23
      DUF397  1 atWrKSsySgggggnCVEvaalpdavavRDSkdp.dgpvLtftpaewaaFlagv 53
                atWrKSs Sg+ g  CVE a++++ v+vRDSk   d pvL+f ++ewaaFl+gv
  KIR61325.1  9 ATWRKSSVSGDTG--CVEAAFVDEEVGVRDSKLSdDSPVLVFARHEWAAFLRGV 60
                69********987..****99999788*****866*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       170  (0.00948185); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 492.74
//
Query:       KIR61326.1  [L=456]
Description: hypothetical protein TK50_26920 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0054   15.0   0.0       0.54    8.4   0.0    2.8  3  tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
  ------ inclusion threshold ------
       0.19   11.8   0.3       0.41   10.7   0.3    1.5  1  DZR          Double zinc ribbon


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.4   0.0     0.004        36      22      61 ..       7      46 ..       3      56 .. 0.84
   2 ?   -0.2   0.0     0.025   2.2e+02     361     409 ..     146     192 ..      97     199 .. 0.65
   3 !    8.4   0.0     6e-05      0.54     521     572 ..     248     296 ..     245     341 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.004
  tRNA-synt_1 22 kkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGk 61
                 +++ ++   PP   G++H+G +++ +l d   r+++  G 
   KIR61326.1  7 RETSTVLLAPPSPPGAPHLGGIYTWALLDAARRTAQHFGG 46
                 566688899********************99999877665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.025
  tRNA-synt_1 361 svpfcerskkpiiyrateqWfvrvkeladaalkavekvqfvpkskekry 409
                     +c   ++p+  r t  Wf  v+   d++ +    v++vp ++ +r 
   KIR61326.1 146 ATEHCFTCENPLRLRTTRDWFLPVD--LDEVFRRAATVEWVPGFGIRRL 192
                  4457777788888888888888877..3666777777788777666655 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 6e-05
  tRNA-synt_1 521 leGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmSKslgNvi 572
                  + G+Di r W+ +l  l+ + tg  P + ++ hg ++d  GrK+S+  g  +
   KIR61326.1 248 AAGFDIQRKWLLTL--LAANQTGALP-TMIVQHGTLLDTAGRKLSRYTGASL 296
                  68********9875..6778899999.68999*************9888654 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   4.6e-05      0.41      10      41 ..     129     160 ..     124     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.6e-05
         DZR  10 pdarfCseCgtklkavaaedrCpsCgekvdpe 41 
                 ++ + C  C+ +l++ aa ++C  C+ ++ ++
  KIR61326.1 129 AEEKWCLSCRIALPPSAATEHCFTCENPLRLR 160
                 67889999999999999999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 3036.80
//
Query:       KIR61327.1  [L=285]
Description: hypothetical protein TK50_26940 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-11   42.6   0.1    1.7e-10   41.8   0.1    1.4  1  GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fol


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.1   9.2e-15   1.7e-10      67     120 .]       2      55 ..       1      55 [. 0.97

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 9.2e-15
                   EE-S-GGGHHHHHHHHHHTT-EEEEESSS-SSHHHHHHHHHHHHHHTS-EEEE- CS
  GFO_IDH_MocA  67 ivatpngtheelakaaleagkhvllEKPlattveeakelvelaekkgklvsvgy 120
                   ++at + +h+ela+aa+ +gkhv++EKPla++ ++  +l+e+a+ +g +++vg+
    KIR61327.1   2 LIATDAASHFELAMAAISQGKHVFVEKPLALSTTDSVALAEAAAIAGLTLMVGH 55 
                   699*************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2027.00
//
Query:       KIR61328.1  [L=90]
Description: hypothetical protein TK50_26945 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 630.06
//
Query:       KIR61329.1  [L=125]
Description: hypothetical protein TK50_26955 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.47
# Mc/sec: 794.53
//
Query:       KIR61330.1  [L=89]
Description: hypothetical protein TK50_26960 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   15.0   0.9      0.087   13.0   0.2    2.0  2  DnaB_bind  DnaB-helicase binding domain of primase
        0.1   12.7   0.0       0.13   12.4   0.0    1.1  1  ANAPC5     Anaphase-promoting complex subunit 5


Domain annotation for each model (and alignments):
>> DnaB_bind  DnaB-helicase binding domain of primase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   9.7e-06     0.087       3      36 ..      21      54 ..      19      65 .. 0.90
   2 ?    0.7   0.1     0.067     6e+02       7      26 ..      63      82 ..      58      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.7e-06
                HHHHHTTTT--TTSHHHHHHHHHHHHHHHTTSSS CS
   DnaB_bind  3 Flierllegydlstpegkaravrealpllaripd 36
                ++i+r++++  l+ ++  a +++ea+pl+++ p+
  KIR61330.1 21 YVIRRASAQAQLGEADHAASLLAEAIPLIREAPS 54
                99****************************9877 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.067
                HTTTT--TTSHHHHHHHHHH CS
   DnaB_bind  7 rllegydlstpegkaravre 26
                r++++  ++  + +ara+++
  KIR61330.1 63 RARQRLPFTKIDPRARALDA 82
                57889999999999999987 PP

>> ANAPC5  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.4e-05      0.13      44      81 ..      22      59 ..      11      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.4e-05
      ANAPC5 44 lLnlaslhadfghneeAvkaleeairlArenkDkscLa 81
                ++  as +a++g+++ A + l eai l re  ++  L 
  KIR61330.1 22 VIRRASAQAQLGEADHAASLLAEAIPLIREAPSERNLR 59
                6788999***********************99888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 657.92
//
Query:       KIR61331.1  [L=235]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-49  166.5   0.3    5.7e-49  166.2   0.3    1.0  1  adh_short       short chain dehydrogenase
    7.9e-45  153.2   0.4    9.7e-45  152.9   0.4    1.0  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    6.9e-10   39.1   0.8    9.5e-10   38.7   0.8    1.2  1  KR              KR domain
    1.1e-06   28.3   0.1    2.3e-06   27.3   0.1    1.5  1  Epimerase       NAD dependent epimerase/dehydratase family
    2.9e-05   24.0   0.5    4.1e-05   23.5   0.5    1.3  1  NAD_binding_10  NAD(P)H-binding
     0.0067   16.7   1.5        3.2    8.2   0.1    2.4  2  EccE            Putative type VII ESX secretion system transl
  ------ inclusion threshold ------
      0.011   14.9   0.1      0.018   14.2   0.1    1.3  1  RmlD_sub_bind   RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.2   0.3   2.2e-52   5.7e-49       1     188 [.       6     197 ..       6     203 .. 0.92

  Alignments for each domain:
  == domain 1  score: 166.2 bits;  conditional E-value: 2.2e-52
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S..S--SSGGGCS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi..tgsgpfsels 97 
                 kv++vtGa +G+G aia+ la++G +vv+++r+e  + +v++el ++g +a   q+D++d ++v ++++  +k++g+ldvLvnNAGi   + + +++ +
  KIR61331.1   6 KVAVVTGANRGLGAAIARGLAEQGLHVVLAGRNEYFVDRVVSELTKDGLSASGHQLDINDPASVARAFAGTAKRYGRLDVLVNNAGIaiDRGQFAASPD 104
                 89*************************************************************************************855555566666 PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB..-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  98 eeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvp..vagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                  e++++ +++Nl g+  +++a++p+m k+  Gr+vn+sS  +  +      ++Y  sKaa+++ltr la ela+tgi vna+ PG ++T ma 
  KIR61331.1 105 FERVRSALDTNLLGAWRCCAAAVPEMRKNGYGRVVNISSHLASLAtmGDTNVSYRVSKAALNALTRVLAAELADTGILVNACSPGRMNTRMAY 197
                 677************************************99955511556889**************************************86 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9   0.4   3.8e-48   9.7e-45       1     184 [.      12     201 ..      12     213 .. 0.91

  Alignments for each domain:
  == domain 1  score: 152.9 bits;  conditional E-value: 3.8e-48
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH.-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpflet.sree 94 
                   Ga +g+G+aiA+ lae+G +vvl+ +ne   ++ v el++++ ++   ++D++d+++v+++++ +++++g+lD+lvnnagia + +g+f+   + e 
    KIR61331.1  12 GANRGLGAAIARGLAEQGLHVVLAGRNEYFvDRVVSELTKDGLSASgHQLDINDPASVARAFAGTAKRYGRLDVLVNNAGIAID-RGQFAASpDFER 107
                   899***************************99999999998777756*************************************.9999998577** PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSB.STTTT.HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeg..gsivnlssvgaerv.vpnyn.aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg 184
                   ++ ald+nl ++++++ aa+p m+++  g++vn+ss  a+ + + ++n  y ++Kaal+altr lA+el++ gi vNa spg ++T++a g ++
    KIR61331.1 108 VRSALDTNLLGAWRCCAAAVPEMRKNgyGRVVNISSHLASLAtMGDTNvSYRVSKAALNALTRVLAAELADTGILVNACSPGRMNTRMAYGETD 201
                   *********************666655*********9777663667778***************************************987654 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.8   3.7e-13   9.5e-10       4     163 ..       9     172 ..       7     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 3.7e-13
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE-------..--TTT- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrd..klleem 100
                 ++tG+  gLG ++ar lae+g  h+vl +R+   +   ++ ++el++ g + +  ++D+ d+++v+++++   ++ +++   ++ Ag++ d  +  ++ 
  KIR61331.1   9 VVTGANRGLGAAIARGLAEQGL-HVVLAGRN---EYFVDRVVSELTKDGLSASGHQLDINDPASVARAFAGTAKRYGRLDVLVNNAGIAIDrgQFAASP 103
                 89*******************6.89******...4566679**********************************************997622467788 PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HH..HHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqan..YaaaNaflDalaeyr 163
                 + e+++++l   + Gaw    +  +    +    +v +SS  + l ++g +n  Y    a l+al +  
  KIR61331.1 104 DFERVRSALDTNLLGAWRCCAAAVPemrkNGYGRVVNISSHLASLATMGDTNvsYRVSKAALNALTRVL 172
                 999**************9876654435445667788888888877777765433888888888887765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   8.8e-10   2.3e-06       2     176 ..       9     189 ..       8     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 8.8e-10
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHH....HH.T-SEEEE--S---HHHHHHSHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrsalerlfk....ee.qpdavihlAavggvaassedpadfie 89 
                 +VtGa+  +G+a+++ l+e+g +v+   r+++   +   e +      + ++ld+ d+++++r+f+    ++ + d+ ++ A+++  + ++    df +
  KIR61331.1   9 VVTGANRGLGAAIARGLAEQGLHVVLAGRNEYFVDRVVSELTkdglsaSGHQLDINDPASVARAFAgtakRYgRLDVLVNNAGIAIDRGQFAASPDFER 107
                 8********************999999999887777766655899**************9999996222245689************************ PP

                 HHTHHHHHHHHHHH..........HHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT CS
   Epimerase  90 knlqgtlnlleaar..........kagvkrllflsSsevYGkdaeqpkeettltgpl.kpnspYaaaKlageklveayaaqyglnaiilrlfnlyGpr 176
                    ++ +nll a r          k+g  r++++sS+      a+       l   +  +n  Y ++K+a   l++ +aa+    a +++l n ++p+
  KIR61331.1 108 VRSALDTNLLGAWRccaaavpemrKNGYGRVVNISSH-----LAS-------LA-TMgDTNVSYRVSKAALNALTRVLAAEL---ADTGILVNACSPG 189
                 **************77777777766677778887772.....222.......11.223778888888888888888887777...3455555555555 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.5   1.6e-08   4.1e-05       1     123 [.      12     167 ..      12     206 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.6e-08
                     TTTSHHHHHHHHHHHHC-T-EEEEEETT...HHHC.HHHHCT.TTCEEEE--TT-CCHHHHHHTT-.......SEEEES-.........--TCCH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRn...pekl.aeleae.eglevvegdvtdvedlaealkga.......daVvsal.........ggggkd 74 
                     GA+ + G ++++ l+++g ++v++  Rn    +++ +el ++   ++  ++d++d++++a+a++g+       d+ v ++         +     
      KIR61331.1  12 GANRGLGAAIARGLAEQG-LHVVLAGRNeyfVDRVvSELTKDgLSASGHQLDINDPASVARAFAGTakrygrlDVLVNNAgiaidrgqfA----- 100
                     9****************5.*********4442333356663224455689**************77555555588888774544433332..... PP

                     HHH.....................HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHH CS
  NAD_binding_10  75 eeg.....................aknivdaakeagvkRfvlvsaigvgdevpgefgewnkellkaylaa 123
                       +                     ++++v  ++++g  R+v +s+  +   ++g+++   +++ ka+l a
      KIR61331.1 101 --AspdfervrsaldtnllgawrcCAAAVPEMRKNGYGRVVNISSHLASLATMGDTNVS-YRVSKAALNA 167
                     ..02333444667788889999999********************98886666665543.3334444443 PP

>> EccE  Putative type VII ESX secretion system translocon, EccE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.2     0.002       5.1       7      55 ..       5      57 ..       3      92 .. 0.85
   2 !    8.2   0.1    0.0012       3.2      33      67 ..     162     196 ..     144     215 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.002
        EccE  7 tWlalrldpeenvaalsaRgggtegaaraaaa....aarRlakaLreqGirar 55
                t +a+   + +  +a+ aRg +++g++ ++a       +R++++L++ G++a+
  KIR61331.1  5 TKVAVVTGANRGLGAAIARGLAEQGLHVVLAGrneyFVDRVVSELTKDGLSAS 57
                67888888999999**************99973333579**********9986 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0012
        EccE  33 araaaaaarRlakaLreqGirarvleaeeldaala 67 
                 ++a+ a +r la++L++ Gi +++++   +++ +a
  KIR61331.1 162 KAALNALTRVLAAELADTGILVNACSPGRMNTRMA 196
                 678889999999*************9988887666 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1     7e-06     0.018       4      51 ..       9      77 ..       6      94 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7e-06
                   EEESTTSHHHHHHHHHCTTTSEEEEEE-TT.....................T--TTSHHHHHHHHHHH- CS
  RmlD_sub_bind  4 lvtGanGqlGseLakqlaeeglevlaltre.....................eldltdaeavaellkeak 51
                   +vtGan  lG ++a+ lae+gl+v+  +r+                     +ld++d+++va++++ + 
     KIR61331.1  9 VVTGANRGLGAAIARGLAEQGLHVVLAGRNeyfvdrvvseltkdglsasghQLDINDPASVARAFAGTA 77
                   79***********************999999*********************************95543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1791.42
//
Query:       KIR61332.1  [L=236]
Description: cardiolipin synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-10   39.4   0.0    1.4e-09   37.9   0.0    1.7  2  PLDc_2    PLD-like domain
     0.0057   16.8   0.1      0.019   15.2   0.0    1.9  2  PLDc      Phospholipase D Active site motif


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.29   2.6e+03      27      45 ..      33      53 ..      20      78 .. 0.74
   2 !   37.9   0.0   1.6e-13   1.4e-09       5     128 ..     104     223 ..     101     227 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.29
      PLDc_2 27 dallk..aakrgvkvrillds 45
                +al++  aa+rg   r+ll +
  KIR61332.1 33 QALKEvhAARRGEAKRLLLAA 53
                555444488888888888876 PP

  == domain 2  score: 37.9 bits;  conditional E-value: 1.6e-13
      PLDc_2   5 iksAkksidiatyyfvsdreildallk.aakrgvkvrilldskkd..dagavdeaslkelkellleagvevrvfetllgslHaKlylidgktvivGSsN 100
                 i+ A+ si  +++ f +++ +  al+  a + g  v + ld+++    a a   +++  l++l +  g        +    HaK++++d+ +++++S+N
  KIR61332.1 104 IDDARMSIVCSSFNFTPHSGMWTALKSaAVRPGLSVTVYLDAHAGspAAVAAHLPKATVLRTL-TPPGGH------HPLVSHAKFIIVDRVITLLTSAN 195
                 88899999999999***********98677778********9554222222222333333333.333333......34678****************** PP

      PLDc_2 101 ltkrgldlnlElnvviedkelakeleee 128
                 +++++ + n El++ ++d  la+ +e+ 
  KIR61332.1 196 FSYSAENTNIELGLLVHDINLAASIEAL 223
                 ******************9999998875 PP

>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.43   3.9e+03      11      19 ..     103     111 ..     103     120 .. 0.58
   2 !   15.2   0.0   2.1e-06     0.019       6      26 ..     178     198 ..     174     200 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.43
                 EETTTEEEE CS
        PLDc  11 ivDdrvafv 19 
                 i+Dd+++ +
  KIR61332.1 103 IIDDARMSI 111
                 678774433 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2.1e-06
                 ---EEEETTTEEEEE---SSH CS
        PLDc   6 HqKivivDdrvafvGgaNLcd 26 
                 H+K++ivD  ++++++aN+ +
  KIR61332.1 178 HAKFIIVDRVITLLTSANFSY 198
                 ******************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1746.77
//
Query:       KIR61333.1  [L=285]
Description: hypothetical protein TK50_26980 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-08   33.4   0.0    8.9e-08   32.5   0.0    1.4  1  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0     5e-12   8.9e-08      58     109 ..      13      64 ..       2      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 5e-12
                 HHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSS CS
  Helicase_C  58 ileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgR 109
                  +e+ +++ +dv++at++++ G+d++++ l+  ++ p+n+++yiq++ R+gR
  KIR61333.1  13 RVERLKADPFDVVLATSMLQVGVDVQRLGLMLVVGQPKNTAEYIQASSRVGR 64 
                 578999999******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2004.50
//
Query:       KIR61334.1  [L=144]
Description: hypothetical protein TK50_27000 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-12   47.6   0.0    2.5e-12   47.0   0.0    1.3  1  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
    2.1e-12   47.3   0.0    3.5e-12   46.6   0.0    1.4  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    2.3e-05   24.6   0.0    2.7e-05   24.4   0.0    1.2  1  Glyoxalase_3  Glyoxalase-like domain
    3.6e-05   24.5   0.0    5.7e-05   23.9   0.0    1.4  1  Glyoxalase_6  Glyoxalase-like domain
  ------ inclusion threshold ------
       0.21   11.5   0.0        4.8    7.1   0.0    2.6  2  Glyoxalase_2  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   6.9e-16   2.5e-12       7      95 ..       3     105 ..       1     128 [. 0.77

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 6.9e-16
                   -S-HHHHHHHHHH.TT-EES............S--E.EETTTTEEEEEEEETTEEEEEEEESSTT...-THHHTS-EEEEEEEEES-HHHHHHHHCT CS
  Glyoxalase_4   7 VeDleaavarfsallGvgpw............qryrdepqevdlafallgsgsvqieLieplegp...eflaehgeglhhlaywvddldaavarlee 88 
                   V Dl + v  ++++lG+ p+              ++++ ++++ +fal+g+ ++ +eLi+ ++ +    + +++  g+ hl+++vddldaa ++l e
    KIR61334.1   3 VSDLARSVTWYEDVLGIAPSgvtisatnpaigAVVEVDNASMRASFALAGD-NLLLELIQYDSPQpkpFTGRNCDVGVMHLCFEVDDLDAAHRDLVE 98 
                   89***************998332222222222333445679**********.69******7776654244455************************ PP

                   TTEEEEE CS
  Glyoxalase_4  89 qGfevvq 95 
                   +G+ v  
    KIR61334.1  99 RGVHVNA 105
                   **99643 PP

>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   9.8e-16   3.5e-12       8     128 .]       2     139 ..       1     139 [. 0.81

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 9.8e-16
                 EESHHHHHHHHHHHHHTSEEEEEEEE..........EESTEEEEEEEEETTTS.EEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHH CS
  Glyoxalase   8 lvgdleksldFYtkvLGfklvkktdn..........teeteglriaffhaggg.hielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlk 95 
                 +v+dl++s+ +Y++vLG   + +t            +    ++r+ f  ag++  +el+ + +p++++       +   +v++++++v+d+++a++ l 
  KIR61334.1   2 PVSDLARSVTWYEDVLGIAPSGVTISatnpaigavvEVDNASMRASFALAGDNlLLELIQYDSPQPKPFTG---RNCDVGVMHLCFEVDDLDAAHRDLV 97 
                 799*******************9988999999999644445555555555544155666666666554433...135689******************* PP

                 HTTGEEEEEEECHHCTEEEEE.........EEEETTSEEEEE CS
  Glyoxalase  96 eagvkvvaepgrhyfgalysf.........yfrDpdGillei 128
                 e+gv v a p     g+++ +         y rDpdGi le+
  KIR61334.1  98 ERGVHVNADPVVLQDGDGVEAgalagtkilYLRDPDGIQLEL 139
                 **********99999999999*******************96 PP

>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   7.5e-09   2.7e-05       8     113 ..       3     114 ..       1     137 [. 0.78

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 7.5e-09
  Glyoxalase_3   8 vpdleeaaarfarrlGftvt.........pggehpglgtaNalvmf...gdg.YlEllavdpeapaperprlfgldrlakgeglhtlalrtddidat 91 
                   v+dl++ + ++++ lG+ +          + g+  +   a   + f   gd+  lEl+++d  +p+p  +r           g+++l++++dd+da+
    KIR61334.1   3 VSDLARSVTWYEDVLGIAPSgvtisatnpAIGAVVEVDNASMRASFalaGDNlLLELIQYDSPQPKPFTGRN-------CDVGVMHLCFEVDDLDAA 92 
                   778888888888888888888888888885566666566666666643557789********9999744443.......358*************** PP

  Glyoxalase_3  92 aarlraaGvdeagrrvrpdggd 113
                   +++l ++Gv++++ +v +++gd
    KIR61334.1  93 HRDLVERGVHVNADPVVLQDGD 114
                   **********999998888765 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.6e-08   5.7e-05       7     104 ..       4     137 ..       1     140 [. 0.76

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.6e-08
  Glyoxalase_6   7 adpaalaaFwaaalgweveree...........aaledpegvgpaaedaatllfqrvpe........pakn.r...vHldlavedldaevarlvalG 80 
                   +d a+ +++++++lg   +              +++++++ ++  a  +  ll++  +         +++n     +Hl ++v+dlda+ + lv+ G
    KIR61334.1   4 SDLARSVTWYEDVLGIAPSGVTisatnpaigavVEVDNASMRASFALAGDNLLLELIQYdspqpkpfTGRNcDvgvMHLCFEVDDLDAAHRDLVERG 100
                   689999*********9999999888888887775555555555556666666666555578888888666651455********************* PP

  Glyoxalase_6  81 Arvlreprdgthgr.............vlaDPeGneF 104
                     v  +p   + g+              l+DP+G + 
    KIR61334.1 101 VHVNADPVVLQDGDgveagalagtkilYLRDPDGIQL 137
                   9999887655555556688899999999999999765 PP

>> Glyoxalase_2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0       0.1   3.7e+02       8      23 ..       3      18 ..       1      26 [. 0.89
   2 ?    7.1   0.0    0.0013       4.8      62      83 ..      79     100 ..      40     142 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.1
                  ES-HHHHHHHHHHTT- CS
  Glyoxalase_2  8 vkdieeskkFYedvle 23
                  v d+ +s  +Yedvl 
    KIR61334.1  3 VSDLARSVTWYEDVLG 18
                  88999*********96 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0013
                   S-EEEEEES-HHHHHHHH..GG CS
  Glyoxalase_2  62 nfeLyFevedvdaflqklkeae 83 
                    ++L Fev+d+da+  +l e +
    KIR61334.1  79 VMHLCFEVDDLDAAHRDLVERG 100
                   4899**********99997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1074.96
//
Query:       KIR61335.1  [L=500]
Description: copper oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-35  119.9   1.1    1.1e-31  109.3   0.1    2.9  3  Cu-oxidase_3  Multicopper oxidase
    9.7e-25   86.9   4.1    4.8e-22   78.2   0.1    2.9  2  Cu-oxidase_2  Multicopper oxidase
    8.3e-06   26.0   0.0    0.00068   19.8   0.0    2.6  2  Cu-oxidase    Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   0.1   1.9e-35   1.1e-31       5     117 ..      71     182 ..      68     184 .. 0.91
   2 ?   -0.8   0.0      0.25   1.5e+03      15      37 ..     418     440 ..     408     461 .. 0.82
   3 !    7.8   0.0   0.00051       3.1      91     116 ..     460     485 ..     443     488 .. 0.84

  Alignments for each domain:
  == domain 1  score: 109.3 bits;  conditional E-value: 1.9e-35
                   EEEECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-SSS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE--T CS
  Cu-oxidase_3   5 ktvsplggterevitvNgqfpgptievregdtvvvnvtNkldentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYhshls 101
                   +++ +++g+++++++vNg+++gpti++r+g++v+  v+N lde ts+hwhG+++++      ++g++++ i++g+++ +r+t++q a+tlwYh+h++
    KIR61335.1  71 GETLFKDGKATRTWGVNGTYLGPTIRARRGERVEFAVHNGLDEATSLHWHGMHLPAV-----MDGGPHQTIAAGDTWAPRWTIDQAAATLWYHPHVH 162
                   5666788888***********************************************.....5556779**************************** PP

                   T....HHH.TT-EEEEEEE-H CS
  Cu-oxidase_3 102 l....qqa.aGlaGaiiiedk 117
                   +    + + +G+aG+++++d+
    KIR61335.1 163 GatadH-MyRGVAGLFLVDDE 182
                   *99955.55*********997 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.25
                   EEEEEECTSSBS-EEEEETT-EE CS
  Cu-oxidase_3  15 revitvNgqfpgptievregdtv 37 
                    +v+tv+g  p p ++  +++ +
    KIR61335.1 418 FQVLTVDGGTPEPPLRGWKDTVL 440
                   6899*********9997766555 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00051
                   SEEEEEEE--TTHHHTT-EEEEEEE- CS
  Cu-oxidase_3  91 agtlwYhshlslqqaaGlaGaiiied 116
                   +  ++Yh hl +++ +G++G +++  
    KIR61335.1 460 NTPYMYHCHLLAHEDDGMMGQFVVLG 485
                   55699******************975 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   1.1   0.00046       2.8      32      73 ..      92     132 ..      68     183 .. 0.76
   2 !   78.2   0.1   8.1e-26   4.8e-22      23     133 ..     372     483 ..     353     486 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00046
                   SEEEEEETTEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECC CS
  Cu-oxidase_2  32 tnvitlpkgevveiviqnntklpHPfHlHGhdfqvlgrgpgn 73 
                    ++i+++ ge+ve+ ++n  +   ++H+HG++   + +++g+
    KIR61335.1  92 GPTIRARRGERVEFAVHNGLDEATSLHWHGMHLPAV-MDGGP 132
                   5789999***********999999******998777.55554 PP

  == domain 2  score: 78.2 bits;  conditional E-value: 8.1e-26
                   E.....ETCCTTTSSEEEEEETTEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEE..EES..S-E CS
  Cu-oxidase_2  23 t.....ngeefsentnvitlpkgevveiviqnntklpHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvair..fkad.npG 111
                         ng+ + +++ ++ +++g+v+ ++++n++   H fH+H ++fqvl  ++g+         +    +++dtv +  g++ +++  f+    p 
    KIR61335.1 372 LasnriNGRSMAMDRIDFGVREGTVEVWEVTNDNGYLHNFHIHDVQFQVLTVDGGT--------PEPPLRGWKDTVLLVQGKRYRLAlrFRGHtAPN 460
                   145556999*******************************************9999........22234789******9977766663377632443 PP

                   E.EEEEESSHHHHHTT-EEEEEE CS
  Cu-oxidase_2 112 v.wllHCHilwHldqGmalqfvv 133
                     +++HCH+l H+d Gm++qfvv
    KIR61335.1 461 TpYMYHCHLLAHEDDGMMGQFVV 483
                   36*******************98 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.1e-07   0.00068      70     125 ..     247     304 ..     209     312 .. 0.89
   2 ?    3.2   0.0     0.014        86      82     135 ..     408     467 ..     362     485 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.1e-07
                 EEEEEEEESSS-BEEEEETSB.-EEEEEETCETTS.EEEESCEEE-TTEEEEEEEEE- CS
  Cu-oxidase  70 yrlriinvsaddslnfsIeGH.kltVvevDgvyve.pvevdsldIavGqrysvlvtan 125
                 +rlr+ n+s+   + f + +  ++++v++Dg     p e+d+l +++G+r +++v ++
  KIR61335.1 247 VRLRMLNGSNARLYHFGFSDDrRFSLVATDGGLLAaPWETDRLYLSPGERAEIVVAFE 304
                 79**************997665***********999******************9875 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.014
                 BEEEEETSB-EEEEEETCETTS.EEE..ESCEEE-TTEEEEEEEEE...-SSSEEEEEEE CS
  Cu-oxidase  82 slnfsIeGHkltVvevDgvyve.pve..vdsldIavGqrysvlvta...nqapgnYwiva 135
                  +nf I++ +++V  vDg   e p++   d++ +  G ry   + +   ++++  Y++++
  KIR61335.1 408 LHNFHIHDVQFQVLTVDGGTPEpPLRgwKDTVLLVQGKRYRLALRFrghTAPNTPYMYHC 467
                 58999************9999976653368888888888888888854322477788888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3693.72
//
Query:       KIR61336.1  [L=345]
Description: NADPH:quinone reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-20   73.5   0.0      3e-20   72.5   0.0    1.6  1  ADH_zinc_N    Zinc-binding dehydrogenase
    1.3e-18   68.3   0.1    4.5e-18   66.6   0.0    1.9  2  ADH_zinc_N_2  Zinc-binding dehydrogenase
    6.7e-06   26.0   0.0    2.7e-05   24.0   0.0    2.0  2  ADH_N         Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
       0.01   15.3   0.1      0.016   14.7   0.1    1.2  1  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   6.7e-24     3e-20       1     101 [.     159     260 ..     159     298 .. 0.86

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 6.7e-24
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEEE.. CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgeee.. 96 
                 gvG+ +vqlA+++G++vi+++ss++  + ++ lGa+ v  ++   +  ri++l  ++gvd+vf++vG g  +e++ +ll++gG+lv +G+  +++ee  
  KIR61336.1 159 GVGSTLVQLARHAGVRVIGTASSRH-HDAVRALGATPVDYREP-GMYHRIRALA-PDGVDAVFDHVG-GPGVERSWQLLRRGGTLVSYGTaATKDEEgn 253
                 8**********************99.6**********977744.**********.99**********.**********************744444456 PP

                 ..EEHHH CS
  ADH_zinc_N  97 ..fdlrn 101
                   +++ +
  KIR61336.1 254 srLPVLK 260
                 5644444 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   4.8e+03      44      56 ..     146     157 ..     108     186 .. 0.56
   2 !   66.6   0.0     1e-21   4.5e-18       2     133 .]     191     343 ..     190     343 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
                   EEEEEEEE----. CS
  ADH_zinc_N_2  44 pggGrlvsiggpp 56 
                   +  G++v+++g  
    KIR61336.1 146 RS-GDVVVVLGAN 157
                   23.5554444322 PP

  == domain 2  score: 66.6 bits;  conditional E-value: 1e-21
                   T-SEEEETTSTTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----...............S-EEE-CHHHCTTT-EEEE--GGG. CS
  ADH_zinc_N_2   2 GAdevidyrtedfe...aatggegvDvvldtvggealleaslkvlpggGrlvsiggpp..............lsaallkpakkrkgrsvkyeflfsm 81 
                   GA+  +dyr++ +    +a+ ++gvD+v+d vgg+   e+s+++l+ gG+lvs+g                 l+a+l  +    + rs ++  +   
    KIR61336.1 191 GAT-PVDYREPGMYhriRALAPDGVDAVFDHVGGPGV-ERSWQLLRRGGTLVSYGTAAtkdeegnsrlpvlkLFAQLKLWHTLPNHRSAYFYNFW-- 283
                   553.57999666666999999**************99.*******777*******5556999988888777744444444443444444444444.. PP

                   ..-............-HHHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  82 kas...........aqadileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                                   +d l+++++l+++G l p +  + pl+eaa A+ + es+ + GKi+l
    KIR61336.1 284 --AghrdraafrrsLAKD-LTQVFRLLADGVLDPQIAAEIPLTEAASALTLAESRTVAGKIIL 343
                   ..0334578888866666.******************************************98 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0     6e-09   2.7e-05       2      61 ..      36      95 ..      35     104 .. 0.91
   2 ?   -0.0   0.0      0.17   7.8e+02      86     109 .]      93     116 ..      89     116 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 6e-09
                TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE CS
       ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvv 61
                g+v+++++a+g+   + ++ +g+   + ++p+++G ++vG+v++vgp+ ++  vG+r ++
  KIR61336.1 36 GQVVLRMEATGVSFAEQQMRRGKYYDQPPFPFVPGYDLVGTVAAVGPGGDTDLVGRRFAA 95
                79********************9999999*******************999999998766 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.17
                 ETTTSS-SSSBSEEEECGGGEEEE CS
       ADH_N  86 llgvsldGgfaeyvvvpekklvkl 109
                 +  v+  G++a++v+v++++lv++
  KIR61336.1  93 FAAVTKIGAWATHVLVEAADLVPV 116
                 5666778**********9999986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   3.5e-06     0.016       1      80 [.     151     229 ..     151     233 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.5e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HH..HHHHHHHHHT-SEEEE--S---HHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrs..alerlfkeeqpdavihlAavggvaas 80 
                 ++V+Ga+G +Gs lv+    +g++vig ++ ++ ++  +l     + +d++++      r+++  ++dav+   +  gv++s
  KIR61336.1 151 VVVLGANGGVGSTLVQLARHAGVRVIGTASSRHHDAVRAL---GATPVDYREPGmyHRIRALAPDGVDAVFDHVGGPGVERS 229
                 68***************************99555554444...456666666665544455555677777777666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2739.54
//
Query:       KIR61337.1  [L=119]
Description: hypothetical protein TK50_27015 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 913.15
//
Query:       KIR61338.1  [L=900]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-18   67.9   1.0    1.3e-18   67.9   1.0    2.7  3  AAA_16    AAA ATPase domain
    8.9e-16   57.2   0.3    1.9e-15   56.1   0.0    1.7  2  GerE      Bacterial regulatory proteins, luxR family
    0.00011   21.9   0.1    0.00011   21.9   0.1    3.3  5  HTH_23    Homeodomain-like domain
    0.00016   22.0   0.0    0.00086   19.6   0.0    2.2  1  AAA_22    AAA domain
    0.00069   19.7   0.1     0.0091   16.1   0.1    3.1  2  HTH_28    Helix-turn-helix domain
     0.0026   17.5   0.0      0.038   13.8   0.0    2.8  2  HTH_10    HTH DNA binding domain
     0.0069   15.6   0.3      0.042   13.0   0.1    2.1  2  DAP3      Mitochondrial ribosomal death-associated protein 3
  ------ inclusion threshold ------
      0.022   14.5   0.2       0.12   12.2   0.2    2.3  1  HTH_30    PucR C-terminal helix-turn-helix domain
      0.029   13.2   0.1      0.081   11.8   0.0    1.7  2  DUF2791   P-loop Domain of unknown function (DUF2791)
      0.036   14.0   0.0       0.08   12.9   0.0    1.5  1  NACHT     NACHT domain
        0.1   12.2   0.1        3.9    7.1   0.0    2.8  2  HTH_24    Winged helix-turn-helix DNA-binding
        1.1    8.9   5.8       0.14   11.8   0.2    2.4  2  TPR_21    Tetratricopeptide repeat-like domain
        9.6    6.2   9.0         39    4.3   0.1    4.7  5  TPR_10    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   1.0   9.6e-22   1.3e-18       2     167 ..      11     164 ..      10     167 .. 0.76
   2 ?   -3.5   0.1       8.6   1.2e+04     103     137 ..     230     263 ..     197     267 .. 0.45
   3 ?   -1.4   0.3       1.9   2.7e+03     127     127 ..     372     372 ..     297     445 .. 0.54

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 9.6e-22
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrek 100
                 lvGR  el+ L+++ + vr+gr+++++++Ge+G+GKs+l+ ++++a++  g+ ++     ++e+++pysal q++    +l  l+d      + +++++
  KIR61338.1  11 LVGRSVELKVLHELTGEVRAGRGGALVVRGEAGIGKSTLLAHARDAAS--GVRVIHVAGAEFERELPYSALHQLC-V-PVLGHLADL-----PTRHADA 100
                 8*******************************************9888..556666666666667***8888888.3.677777666.....6667777 PP

      AAA_16 101 leealaavpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrlleskpl 167
                 l+ a++  ++ ++++ +   ++l  l+  ++r  rpl+ v+Dd++w+d+as+ +l +  r++ + p+
  KIR61338.1 101 LRVAFG-LAAGTPDLFHIGVATLGLLA-AAAR-VRPLLCVVDDAHWLDAASARALTFVGRRVATEPI 164
                 777777.33344444444444444444.4444.799******************9998888776665 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8.6
      AAA_16 103 ealaavpelagaeasrllellkrllallsrderpl 137
                 ea + +p++++  ++r+ + +++ l+ ls d+r l
  KIR61338.1 230 EAGGFGPPDTSPVSTRIERSFQARLSALSDDAR-L 263
                 222222333333335666666666655555555.4 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.9
      AAA_16 127 l 127
                 +
  KIR61338.1 372 A 372
                 1 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       6.2   8.5e+03      17      30 ..     610     623 ..     610     624 .. 0.85
   2 !   56.1   0.0   1.4e-18   1.9e-15       2      53 ..     841     892 ..     840     895 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6.2
                 TS-HHHHHHHHTS- CS
        GerE  17 GksnkeIAeelniS 30 
                 G+ +  IAee  i+
  KIR61338.1 610 GLAMASIAEEEAIA 623
                 889999***98886 PP

  == domain 2  score: 56.1 bits;  conditional E-value: 1.4e-18
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvel 53 
                 +L+ +E+ + rl+a+G ++ e+A++l+iS++TV +h++ni++KL+++sr +l
  KIR61338.1 841 QLTIQELHIARLVAAGATSSEVAAQLFISPRTVDTHLRNIFRKLGINSRRQL 892
                 79************************************************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.6   9.2e+03      23      34 ..     282     293 ..     281     294 .. 0.85
   2 ?   -3.7   0.5       8.8   1.2e+04       3      11 ..     325     333 ..     323     339 .. 0.61
   3 ?   -2.2   0.0         3   4.2e+03      21      38 ..     620     637 ..     618     650 .. 0.76
   4 ?   -2.7   0.0       4.1   5.7e+03       6      20 ..     644     657 ..     639     659 .. 0.82
   5 !   21.9   0.1   7.9e-08   0.00011       8      47 ..     847     887 ..     840     890 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.6
      HTH_23  23 IAreLgvsrrTv 34 
                 +Ar+Lg+   T 
  KIR61338.1 282 AARLLGIDVPTA 293
                 69*****99985 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8.8
      HTH_23   3 sereRlril 11 
                 s+reR+r+ 
  KIR61338.1 325 SARERQRAH 333
                 667777664 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3
      HTH_23  21 reIAreLgvsrrTvyrwl 38 
                 ++IA++ g +++++ r++
  KIR61338.1 620 EAIADAIGGPPMHYHRIH 637
                 589999999999999985 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 4.1
      HTH_23   6 eRlrillllaeGlsv 20 
                 +R+++l l++ +++v
  KIR61338.1 644 RRAEALALFD-RATV 657
                 89*****999.5665 PP

  == domain 5  score: 21.9 bits;  conditional E-value: 7.9e-08
      HTH_23   8 lrillllaeGlsvreIAreLgvsrrTvy.rwlkryreeGle 47 
                 l+i++l+a G++ +e+A++L +s+rTv+ + ++ +r+ G+ 
  KIR61338.1 847 LHIARLVAAGATSSEVAAQLFISPRTVDtHLRNIFRKLGIN 887
                 89**************************8889999888875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   6.2e-07   0.00086       4     127 ..      32     168 ..      28     172 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6.2e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst......sskdllrellralglelka.................erlsseell 79 
                 + g lvv Ge+G+GK+tll+  ++ +         +++v++v  ++ +       + +l+  +l  l     +                  + ++ ++ 
  KIR61338.1  32 RGGALVVRGEAGIGKSTLLAHARDAAS--------GVRVIHVAGAEFErelpysALHQLCVPVLGHLA----DlptrhadalrvafglaaGTPDLFHIG 118
                 6799*********************97........888887777777755333334455444444444....244458888888888877667777777 PP

      AAA_22  80 ealeqalrarav..ielliiDEaqhlr..seealeeLrsllnlsrkgvqliL 127
                  a    l a+a+  + l ++D+a+ l+  s++al+++ +++   + ++++++
  KIR61338.1 119 VATLGLLAAAARvrPLLCVVDDAHWLDaaSARALTFVGRRVA--TEPIAMVF 168
                 555555555555799999********9988****99988888..88888877 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         6   8.2e+03      18      28 ..     282     292 ..     281     294 .. 0.85
   2 !   16.1   0.1   6.6e-06    0.0091       3      43 ..     847     888 ..     847     896 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6
      HTH_28  18 aArelgisrrt 28 
                 aAr+lgi+  t
  KIR61338.1 282 AARLLGIDVPT 292
                 8******9877 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 6.6e-06
      HTH_28   3 leiikllaaGhsvreaArelgisrrtv.yrWikryeegGiag 43 
                 l+i +l+aaG + +e+A++l is+rtv   +++ +++ Gi++
  KIR61338.1 847 LHIARLVAAGATSSEVAAQLFISPRTVdTHLRNIFRKLGINS 888
                 6899***********************888999999999865 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.65   8.9e+02      33      49 ..      42      58 ..      40      60 .. 0.86
   2 !   13.8   0.0   2.8e-05     0.038      24      51 ..     857     884 ..     853     885 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.65
      HTH_10 33 lGIskstlsehLrkaes 49
                 GI kstl+ h r a s
  KIR61338.1 42 AGIGKSTLLAHARDAAS 58
                69*********999865 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.8e-05
      HTH_10  24 vtlkeLAkelGIskstlsehLrkaeskl 51 
                 +t++e+A +l Is+ t+  hLr++ +kl
  KIR61338.1 857 ATSSEVAAQLFISPRTVDTHLRNIFRKL 884
                 7999********************9998 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   3.1e-05     0.042       8      58 ..      18      66 ..      11      70 .. 0.79
   2 ?   -0.5   0.0      0.41   5.6e+02      22      36 ..     535     549 ..     523     553 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.1e-05
                HHHHHHHTTS-SSS---EEEEE-SSSSSTTTTHHHHHHHGGGS--EEEEES CS
        DAP3  8 lelikklkkadkkkkvkrlvltGekgsGKSvlLlqalayAlekgwvvlhvp 58
                l+++++l  + +++    lv+ Ge g GKS+lL++a   A  +g+ v+hv 
  KIR61338.1 18 LKVLHELTGEVRAGRGGALVVRGEAGIGKSTLLAHARDAA--SGVRVIHVA 66
                566888888888999999*****************99887..455566665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.41
                 ---EEEEE-SSSSST CS
        DAP3  22 kvkrlvltGekgsGK 36 
                 +  r+vl+G+ gsG+
  KIR61338.1 535 PLIRRVLDGRHGSGR 549
                 778***********7 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   8.8e-05      0.12      11      45 ..     855     889 ..     850     899 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.8e-05
                 TTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TT CS
      HTH_30  11 nggnisatAkaLhvHrnTlryRLrrieellgldld 45 
                 +g   s++A++L++++ T+   Lr i + lg++ +
  KIR61338.1 855 AGATSSEVAAQLFISPRTVDTHLRNIFRKLGINSR 889
                 5666789**********************999866 PP

>> DUF2791  P-loop Domain of unknown function (DUF2791)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.9e-05     0.081      27      79 ..      11      63 ..       4     101 .. 0.86
   2 ?   -2.1   0.0      0.97   1.3e+03     173     212 ..     744     783 ..     725     815 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.9e-05
     DUF2791 27 aVGrereiealledlervaeggaafrfirGeYGsGKtFllqllreralergfv 79
                 VGr+ e ++l+e   +v +g++   ++rGe G GK+ ll+ +r  a   +++
  KIR61338.1 11 LVGRSVELKVLHELTGEVRAGRGGALVVRGEAGIGKSTLLAHARDAASGVRVI 63
                69*****************************************9999765544 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.97
     DUF2791 173 kvlrayyrakeegdeelksaalrWLrGeyktktearkelg 212
                   ++ay r+  +g ee+ + a++ L+ ++     ar++l 
  KIR61338.1 744 LGIAAYARGLVTGSEEQYRTAVAHLEESPLSTYRARAHLV 783
                 55899*****************999998888888887765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.8e-05      0.08       3      20 ..      36      53 ..      35      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.8e-05
                EEEEC-TTTCHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkl 20
                ++++GeaG+GK+tLl++ 
  KIR61338.1 36 LVVRGEAGIGKSTLLAHA 53
                689************985 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.13   1.7e+02      11      27 ..     604     620 ..     602     624 .. 0.87
   2 ?    7.1   0.0    0.0028       3.9      16      39 ..     855     878 ..     849     879 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.13
      HTH_24  11 lLqknprisqreLAerl 27 
                 +L ++p++ ++ +Ae+ 
  KIR61338.1 604 ALTADPGLAMASIAEEE 620
                 799************86 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0028
      HTH_24  16 prisqreLAerlglSpstvnrrlk 39 
                 ++ + +e+A +l +Sp tv ++l+
  KIR61338.1 855 AGATSSEVAAQLFISPRTVDTHLR 878
                 6899***************99998 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   1.1       2.9     4e+03      79     107 ..     405     432 ..     361     455 .. 0.56
   2 ?   11.8   0.2    0.0001      0.14      84     179 ..     713     811 ..     641     826 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.9
      TPR_21  79 aLllAkaaveagdlaaAkaqLewvlekak 107
                 +L++A+aa  ag  ++A+    +++e++ 
  KIR61338.1 405 TLAAAQAALVAGRPDRAAMLV-RAVEHTG 432
                 455555555555555554433.3333332 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.0001
      TPR_21  84 kaaveagdlaaAkaqLewvlekakdeelka...larlRLarvllaekkydeAlktLeakkeeafaalvaelrGDilvaqgkldeAraaYqaAlaaleek 179
                 +aav  gd ++A ++Le+++e a+  + ++   +a      v   e++y  A++ Le+++ ++++a++  + G+ l ++g++ + r + + A + l+e 
  KIR61338.1 713 EAAVRCGDSDTAGSALESLVERADASGTATglgIAAYARGLVTGSEEQYRTAVAHLEESPLSTYRARAHLVYGEWLRREGRRRDCRMHLRTAHRLLSEA 811
                 567888999999999999988887665543222566655668899*****************************************9999998877665 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.6     5e+03      25      39 ..     347     361 ..     345     362 .. 0.87
   2 ?   -2.5   0.3         4   5.5e+03      11      30 ..     374     393 ..     372     395 .. 0.79
   3 ?   -3.3   0.0         7   9.7e+03      26      42 .]     403     419 ..     403     419 .. 0.81
   4 ?    4.2   0.1     0.031        43      15      28 ..     642     655 ..     638     657 .. 0.91
   5 ?    4.3   0.1     0.028        39       5      30 ..     741     766 ..     739     770 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.6
      TPR_10  25 leealairrrllGpd 39 
                  ++a  + ++++Gpd
  KIR61338.1 347 DRRAWHRAQATVGPD 361
                 589999*******98 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4
      TPR_10  11 alrqrgrydeAealleeala 30 
                 + r+rg   +A a+le+a +
  KIR61338.1 374 RARSRGGVVAAAAFLERAAE 393
                 66778888899******987 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 7
      TPR_10  26 eealairrrllGpdHPd 42 
                 e++la+ +++l +  Pd
  KIR61338.1 403 ERTLAAAQAALVAGRPD 419
                 78999999999877766 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.031
      TPR_10  15 rgrydeAealleea 28 
                 rgr++eA+al+++a
  KIR61338.1 642 RGRRAEALALFDRA 655
                 9**********998 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.028
      TPR_10   5 lnNLanalrqrgrydeAealleeala 30 
                  + L++a ++rg  +++e+ ++ a+a
  KIR61338.1 741 ATGLGIAAYARGLVTGSEEQYRTAVA 766
                 667*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 6157.09
//
Query:       KIR61339.1  [L=147]
Description: hypothetical protein TK50_27030 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-20   71.6   0.0    5.8e-20   71.4   0.0    1.1  1  SnoaL     SnoaL-like polyketide cyclase
    1.1e-16   61.3   0.5    1.4e-16   61.0   0.5    1.1  1  SnoaL_2   SnoaL-like domain


Domain annotation for each model (and alignments):
>> SnoaL  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.0   6.5e-24   5.8e-20       2     126 .]       7     137 ..       6     137 .. 0.88

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 6.5e-24
                 HHHHHHHHHHHTT-HHHHHGTEEEEEEETCCTT..TCECHHHHHHHH...HHHHHHHCTTCEEEEEEE.EEETTEEEEEEEEEEEESSEBTT.BE-TT- CS
       SnoaL   2 lvlrfyeevwnsgdldaldelvaedvvdhnpee..eparGlegfraf...veelfkafPDlkvevedl.vaegdkvaarltftGthtgeflG.ipptGk 93 
                 +++ +++++wn  d+ ++del+a+dv  h++ +  ++   +++ +a+   v++l+  +PDl +++e   ++++d  a+r+++tGt  g f G  +p G 
  KIR61339.1   7 RLVGAWKALWNG-DFGDVDELIAPDVRVHAALAdgGDGSAIDDAKAMtgwVAQLRGPLPDLVFDIEVGpIVQDDLLALRWRATGTYGGGFPGaGAPVGT 104
                 578899999986.******************99664555555555553326778889*********9659999*******************8899*** PP

                 EEEEEEEEEEEEETTEEEEEEEEECHHHHHHHC CS
       SnoaL  94 kvkfeeitllrvedGkIveewdviDllgllrQl 126
                 +v+f++++llrv+dG+Ive+w   D+l ll+Ql
  KIR61339.1 105 PVDFTGVDLLRVRDGQIVEYWLNSDMLLLLTQL 137
                 ********************************8 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.5   1.6e-20   1.4e-16       5     102 .]      12     124 ..       7     124 .. 0.89

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 1.6e-20
                 HHHHHTTCHHHHHHTEEEEEEEEET...TSE...EESHHHHHHHHHHHHHHEEEEEEEEEEE.EEETTEEEEEEEEEEE........EETTSSEEEEEE CS
     SnoaL_2   5 laalnagdldalaalfapdvvwedp...gge...lrGreairaffralfaafpdlrfeihdv.vadgdrvavewtvtgt........ipatgrgvtvrg 88 
                 + al +gd+ ++++l apdv+++ +   gg+   ++  +a+  ++++l+  +pdl f+i+   ++++d  a++w++tgt          + g++v+++g
  KIR61339.1  12 WKALWNGDFGDVDELIAPDVRVHAAladGGDgsaIDDAKAMTGWVAQLRGPLPDLVFDIEVGpIVQDDLLALRWRATGTygggfpgaGAPVGTPVDFTG 110
                 568899*****************885444446667777777779999999*********9999***********************9999********* PP

                 EEEEEEETTEEEEE CS
     SnoaL_2  89 vdvfrvrdGkiveh 102
                 vd++rvrdG+ive+
  KIR61339.1 111 VDLLRVRDGQIVEY 124
                 ************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       180  (0.0100396); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.47
# Mc/sec: 938.69
//
Query:       KIR61340.1  [L=376]
Description: FAD-dependent oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-15   56.0   9.0    7.3e-14   51.8   8.9    2.5  1  FAD_binding_3  FAD binding domain
    0.00014   22.0   0.6    0.00014   22.0   0.6    2.0  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0015   17.7   0.9     0.0032   16.6   0.9    1.4  1  FAD_binding_2  FAD binding domain
     0.0024   17.0   0.1       0.56    9.2   0.0    2.2  2  Lycopene_cycl  Lycopene cyclase protein
     0.0061   15.8   0.8      0.026   13.8   0.9    1.9  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
       0.02   14.8   0.2       0.03   14.2   0.2    1.3  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
      0.035   13.7   8.2      0.031   13.8   2.2    2.2  2  DAO            FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   8.9   2.8e-17   7.3e-14       3     320 ..       4     323 ..       2     337 .. 0.75

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 2.8e-17
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHH...HHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHHCHHC CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtme...llrqlGledrilaegapnelmgealynelsdtpkaradleless 95 
                    +V I+GaG+ Gl+la++Ls +G  v + e  +t++  +++++l+    +    ++ +Gl d++++          +l+++        ++ + + s
     KIR61340.1   4 PVTIIGAGLGGLVLARVLSGHGMPVEVYEAEATAAARSQGGMLDIHDYNgqlAIEAAGLTDEFRRIVLAGRQAMRFLGTD---GTVLFEKGD-DGS 95 
                    799*************************************999866554333799*******999875444333333333...335666666.889 PP

                    ST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGG...EEEEEEEEEEEE CS
  FAD_binding_3  96 pervtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgie...fegeetvyeagv 187
                    + r++v    +l riL+++    +  +vr++++ ++++  + g +a+         +tv+ + lvGaDG++S++r  l      ++ge+ v e  +
     KIR61340.1  96 GGRPEV-QRGDLRRILLDS---LPtGTVRWAAKARTVRGLGHGRHAVTFAD----GSTVETELLVGADGAWSRIRPLLSDAvpeYTGESYV-ETYL 182
                    999986.6789*******9...55578888888888888888988877655....368*****************9887542136677755.8999 PP

                    EEEEEEC.-SCCCTTC.CEEEEECCTTEEEEEECCETEEEE...EEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEE.EEEEEEEEE..EEE CS
  FAD_binding_3 188 ldvlfda.dlsdivep.lvlilsaesrgvmviPlentlerf...yvqvearaekeersekfteeevkarlreivgektldv.eieevsawt..vaq 275
                     d++ +  + +++v + +++ +sa +++v+ +   +tl+++   ++ +++ ++++ ++ ++  ++++++ +    e t+   + +   +++  +a 
     KIR61340.1 183 YDATTRHpRAAKMVGEgSMYAPSATEGIVAHRESGDTLHAYvslTRPLDWFDDIDFTDRATAAARIVQEFQGWAPELTALItDADGGPVLRplHAL 278
                    999999988888888889999999999885554444333330004566777777777777777777776665544444333355544444411444 PP

                    EEESSSEET.TEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 276 rvaekyrkg.rvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaa 320
                     +  ++ +   v l GDAaH + P +G G N+a+ D  +L+++Laa
     KIR61340.1 279 PLGHRWDHVpGVTLLGDAAHLVAP-NGEGANLAMLDGAELGKALAA 323
                    45566766679*************.69*****************97 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.6   5.3e-08   0.00014       1      35 [.       7      41 ..       7      58 .. 0.87
   2 ?   -2.2   0.1         2   5.2e+03      23      34 ..      86      98 ..      79     105 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 5.3e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGra 35
                   I+GaGl+Glv+A+ L+ +g  v+++e+      r+
     KIR61340.1  7 IIGAGLGGLVLARVLSGHGMPVEVYEAEATAAARS 41
                   9*************************987766555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2
                   EEE-SSSS.SSGG CS
  NAD_binding_8 23 lllekrdr.lGGr 34
                   +l+ek+d+  GGr
     KIR61340.1 86 VLFEKGDDgSGGR 98
                   799**98846665 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.9   1.2e-06    0.0032       2      45 ..       5      45 ..       5      54 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.2e-06
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-E CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgi 45
                   v +iG+Gl+GL+ A  ++ +G  v v e e     a+a sqGg+
     KIR61340.1  5 VTIIGAGLGGLVLARVLSGHGMPVEVYEAEAT---AAARSQGGM 45
                   569*****************************...*******98 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.4    0.0031       7.9       2      32 ..       5      33 ..       4      42 .. 0.79
   2 !    9.2   0.0   0.00022      0.56      83     144 ..     100     160 ..      83     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0031
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvliea 32
                   v +iGaG+ gl lA  l  +  g+ v + ea
     KIR61340.1  5 VTIIGAGLGGLVLARVL--SGHGMPVEVYEA 33
                   78*************99..777776666655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00022
  Lycopene_cycl  83 rvsskrlkeellerlvengvklleakvesveeeeageslvvleggrkirarlvvdarglasl 144
                     v++ +l++ ll +l+  g  +  ak+  v+    g+  v+ ++g +++  l v a g+ s+
     KIR61340.1 100 EVQRGDLRRILLDSLP-TGTVRWAAKARTVRGLGHGRHAVTFADGSTVETELLVGADGAWSR 160
                    699*************.6667789**********************************7765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.9     1e-05     0.026       3      36 ..       5      38 ..       3     163 .. 0.82
   2 ?    0.1   0.0      0.15   3.8e+02     200     237 ..     119     157 ..     105     182 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1e-05
                 EEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  3 vvviGgGpAGlaaaltlaqagakvtlvelegtcl 36
                 v +iG+G +Gl +a+ l+ +g+ v ++e+e t  
   KIR61340.1  5 VTIIGAGLGGLVLARVLSGHGMPVEVYEAEATAA 38
                 89*************************9666544 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.15
                  EEESCEEEEEEETTE.EEEEEETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 200 vklgtsvkeidgnge.klevvledgeeidadlvvvavGv 237
                  v++ +++ +++g g+ ++ v+  dg++++++l+v a G 
   KIR61340.1 119 VRWAAKARTVRGLGHgRHAVTFADGSTVETELLVGADGA 157
                  667777888888888667799999999999999988775 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   1.2e-05      0.03       2      41 ..       5      44 ..       4      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekalek 41
                v++iGaG+ G  +a v+  +g++V +++ ++ a+++++  
  KIR61340.1  5 VTIIGAGLGGLVLARVLSGHGMPVEVYEAEATAAARSQGG 44
                99***************************99999988765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.2   1.2e-05     0.031       2      69 ..       5      64 ..       4      85 .. 0.71
   2 ?    3.2   0.4     0.021        53     168     321 ..     127     283 ..     116     317 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHH CS
         DAO  2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelr 69
                v iiG+G  Gl  A+ L+ +g  V ++e++     +a    +g+l  + +         +l+ ea  + +
  KIR61340.1  5 VTIIGAGLGGLVLARVLSGHGmpVEVYEAEA--T-AAARSQGGMLDIHDY-NG------QLAIEAAGLTD 64
                89******************9*********3..3.455556666655332.33......44554444444 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.021
                 CEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHH...HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSE CS
         DAO 168 evtgleeedgkvwgverttp.gendaadavVnaaGawsd...llgllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgr 262
                 +v+gl +  g+ + v  t + g++++ + +V a Gaws+   l   l +  +p + +  +++ +  l +++ ++    p   +  +++++y+ p++  +
  KIR61340.1 127 TVRGLGH--GR-HAV--TFAdGSTVETELLVGADGAWSRirpL---LSDA-VP-EYTGESYVET-YLYDATTRH----PRAAKMVGEGSMYA-PSATEG 209
                 5666622..22.333..223366634477********984322...2222.34.3333333344.566633222....22214444444444.444444 PP

                 EEEEESSE..............EETTCSS..TSCSHHHHHHHHHHHHHHSGGGCGEE.EEEEE..EEEETTSSEEEEE CS
         DAO 263 vlvGgtad..............eesgddd..pevdeedidellealrklfPqlgdvl.rkwaG..lrplpdglplige 321
                 +++  +                +   +dd  ++  + +++++ ++ + + P+l  +   +  G  lrp  + lpl  +
  KIR61340.1 210 IVAHRESGdtlhayvsltrpldW---FDDidFTDRATAAARIVQEFQGWAPELTALItDADGGpvLRP-LHALPLGHR 283
                 76644333477777777774432...333234666667777777777777887554413444466777.455555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2599.65
//
Query:       KIR61341.1  [L=463]
Description: alpha-L-arabinofuranosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-47  160.8   2.2    4.2e-44  149.9   1.7    2.4  2  AbfB      Alpha-L-arabinofuranosidase B (ABFB) domain
  ------ inclusion threshold ------
       0.01   16.0   0.1       0.22   11.7   0.0    2.5  2  YpM       Yersinia pseudo-tuberculosis mitogen


Domain annotation for each model (and alignments):
>> AbfB  Alpha-L-arabinofuranosidase B (ABFB) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.9e-07    0.0035      83     124 ..     309     351 ..     290     356 .. 0.82
   2 !  149.9   1.7   4.7e-48   4.2e-44       1     140 []     327     461 ..     327     461 .. 0.98

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.9e-07
                 HHCT-EEEEE-T.S.TTCEEEEESSSTTEEEEEETTEEEEEES CS
        AbfB  83 keDATFcpqaGl.adsgsvsleSynypgrylRhynnelyiasn 124
                   DA + +  +  ++ ++v+l+S n p+ ++Rh n +++i+++
  KIR61341.1 309 ITDAEYNAAVSRwGAPNWVRLKSSNLPDYFVRHSNGAVRIDPY 351
                 56888888877778899***********************986 PP

  == domain 2  score: 149.9 bits;  conditional E-value: 4.7e-48
                 EEEECTTSTTEEEEEETTCEEEECE--TTSSHCCHHHC-EEEEE-SS-TTCEEEEESSSTTEEEEEETTEEEEEE--SSHHHHHCT-EEEEE-TS.TTC CS
        AbfB   1 lrltsanytdrYlrhsnksavltevvsssssaalkqdatftvvaGLadsscvSfesvntpgsyLRhsnfrlrleandgsklFkeDATFcpqaGladsgs 99 
                 +rl+s+n++d ++rhsn  +++++     ++  + qd+++++v+GLadss+vSfesvn pg+yLRhs +  rl+and++++F++DATF ++aGlads++
  KIR61341.1 327 VRLKSSNLPDYFVRHSNGAVRIDP-----YPFDPYQDQMWRMVPGLADSSAVSFESVNRPGNYLRHSGYVARLAANDNTSTFRADATFYRTAGLADSSW 420
                 589**************9999999.....9****************************************************************99*** PP

                 EEEEESSSTTEEEEEETTEEEEEESS-G-SCCHHHHT-EEE CS
        AbfB 100 vsleSynypgrylRhynnelyiasnggdatasfraDatfvv 140
                 +s++Syn+p+rylRh n++l+i++ +  +++++r+ atf+v
  KIR61341.1 421 SSFRSYNFPDRYLRHSNYVLRIDPLSAGSSEADRQSATFRV 461
                 **************************999**********96 PP

>> YpM  Yersinia pseudo-tuberculosis mitogen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.041   3.6e+02      30      48 ..     156     174 ..     152     180 .. 0.84
   2 ?   11.7   0.0   2.5e-05      0.22      40      74 ..     269     303 ..     231     312 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.041
         YpM  30 gelyavlystnvnadmtli 48 
                    ya++ys+n  +d+ l+
  KIR61341.1 156 RGQYAIVYSANTSTDLFLV 174
                 457************9887 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.5e-05
         YpM  40 nvnadmtlillrnvggngwgeikrndidkplkyed 74 
                  vn dm +    nvggn w  +++ d   pl+ + 
  KIR61341.1 269 PVNNDMYMWSTSNVGGNSWSVMNQRDYTPPLNCKH 303
                 69************************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3169.74
//
Query:       KIR61342.1  [L=661]
Description: alpha-L-fucosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-85  287.7   7.5      2e-85  287.3   7.5    1.1  1  Alpha_L_fucos    Alpha-L-fucosidase
      8e-32  109.8  22.8    4.6e-16   59.3   3.0    3.8  4  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    7.4e-11   42.4   0.3    1.3e-10   41.7   0.3    1.4  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    8.6e-05   23.0   0.0    0.00081   19.9   0.0    2.3  2  Fucosidase_C     Alpha-L-fucosidase C-terminal domain


Domain annotation for each model (and alignments):
>> Alpha_L_fucos  Alpha-L-fucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.3   7.5   4.5e-89     2e-85       9     350 .]      38     392 ..      31     392 .. 0.85

  Alignments for each domain:
  == domain 1  score: 287.3 bits;  conditional E-value: 4.5e-89
                    ----SSS-SSSSS--.SHHHHHHHHH-EEEEE--SGGGTTT..T-GGGHHHHTT--HH.................HHHGGG..............G CS
  Alpha_L_fucos   9 qaeekyeptwesldk.rklpewFrdaKfGifiHWGlysvpaageaseWyarnmkeekekkvvkfhkkkYg..eefeYkdla..............k 87 
                    +  ++y++tw+s+d+  +++ewF+daKfGi+ HWG++svpa+g  +eWy rnm ++ + + +++hk+ Yg  + + Y++++              +
     KIR61342.1  38 EGPQSYTATWASVDQhPPAAEWFQDAKFGIYYHWGAFSVPAFG--NEWYPRNMWNTGS-AENNHHKSVYGdpSAWPYHNFIngardkagnwvqfaP 130
                    55789**********66788*********************66..********99977.99**********999*****66666666666644448 PP

                    G---TT..--HHHHHHHHHHHT-SEEEEEEE-TT--BSS--TT-S-BGGG.ST-S-HHHHHHHHHHHTT-EEEEEEESS-TT-TT--SS--SHHHH CS
  Alpha_L_fucos  88 eFkaek..FdpeewaklfkaaGakYvvltakHHdgfalwdskvsdwnsvdagPkrDivkelakavrkeglkfglyysladwknpdyyedkkkeedr 181
                    ++k++   +dp+ewa+lf +aGak++ ++a+HHdg+++w+s+v++wnsv  gPk D+++  a+a+r++glk+ +++++  w+   yy+   +++++
     KIR61342.1 131 KLKSAGgnWDPNEWAQLFADAGAKFAGPVAEHHDGYSMWNSRVNEWNSVALGPKLDLLRLHADAIRAKGLKLFVSMHHQ-WNFGGYYQYVPQQSST 225
                    88777678*********************************************************************95.8777777765555543 PP

                    HHHH..........HHHHHHHHHHHHHHHHSTTEEEEEES--SHH.HHTTHHHHHHH..HHHHHHHSTT...-EEBGGG-B-TTSSBBEEBSS--- CS
  Alpha_L_fucos 182 ktekkek....kskkykektlnqlkelvtkYkpdilwfDgewekkeeyynedwkseeelaklykelspg.devlvndrlgkkeaedyqtperglpk 272
                    + +k       + ++ ++ + ++l+e+++ Y+pd++w D  + +      ++w+  e+la +y+++ +  ++v+   + g +++ ++  +erg p+
     KIR61342.1 226 TLRK--LygqlDAATEQQLWSDKLREVIDGYQPDLIWQDLYIGRI-----DEWRRLEFLAYYYNKAVSWnRDVVATYKDGFNNRGEVYDYERGGPA 314
                    3332..13566555569**********************999994.....4566666665555554444344444444444445567779****** PP

                    T-GGG-EEEEE-SB.S--S--S-GS-B--HHHHHHHHHHHHHTTEEEEEEE---TTSS--HHHHHHHHHHHHHHHHHGG CS
  Alpha_L_fucos 273 elkakpWetcttig.ksWgYkrneeeyksakeliklLvdivskgGnlLLnigptadGsipeeeeerLkeiGkWlkvnge 350
                     +++ +W t+++++ +sW+Y+++   y+s+k l++ L+d vsk+G ++Lni+p adG+ip+ ++++L+  G++l++ ge
     KIR61342.1 315 GIQTPYWLTDDSVSsSSWCYTQG-IGYYSTKALLHALIDRVSKNGTMVLNIAPMADGTIPAGQRTILQGFGDHLRRFGE 392
                    **************9********.***************************************************9998 PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2     0.026   1.2e+02       3      43 ..     208     244 ..     206     249 .. 0.79
   2 !   59.3   3.0     1e-19   4.6e-16      10      88 ..     523     599 ..     514     600 .. 0.91
   3 !   42.6   2.9   1.7e-14   7.6e-11      31      89 .]     589     646 ..     589     646 .. 0.97
   4 !   36.0   1.8   1.9e-12   8.7e-09       1      55 [.     606     659 ..     606     661 .] 0.94

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.026
                      GEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE- CS
  RicinB_lectin_2   3 QqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwt 43 
                       qW++    +gyy+ + ++s + L    g+ ++ + +q w+
       KIR61342.1 208 HQWNF----GGYYQYVPQQSSTTLRKLYGQLDAATEQQLWS 244
                      69***....7************9977777777666666666 PP

  == domain 2  score: 59.3 bits;  conditional E-value: 1e-19
                      TTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEE CS
  RicinB_lectin_2  10 ggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqq 88 
                      +++gy++iknv +g+vLd  g+ ++ ga v qw++ +++n +W+l+d g+g+yrivn+ +g+v+d + g+tanG++  q
       KIR61342.1 523 TPTGYVKIKNVTTGLVLDSGGSVAS-GAVVKQWSDGSSTNLHWQLVDVGGGYYRIVNRTNGMVIDSW-GNTANGASALQ 599
                      678***************8776665.***********************99****************.999***99876 PP

  == domain 3  score: 42.6 bits;  conditional E-value: 1.7e-14
                      CTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  31 gstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      g+tanga + q +++g++nqqWrl++ g+g y+i+n+ +g++Ld a g++++G++v++w
       KIR61342.1 589 GNTANGASALQAPWNGGNNQQWRLTSMGNGRYQIINRGTGTALDGA-GNATSGSTVGMW 646
                      6899******************************************.888******999 PP

  == domain 4  score: 36.0 bits;  conditional E-value: 1.9e-12
                      CCGEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEE CS
  RicinB_lectin_2   1 anQqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrle 55 
                      +nQqW+l+s g+g y+i n+++g++Ld ag++t+ g +v  w+ ++++n qW ++
       KIR61342.1 606 NNQQWRLTSMGNGRYQIINRGTGTALDGAGNATS-GSTVGMWAPDSSTNLQWSVT 659
                      69*****88899*********************8.9****************975 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.3   2.8e-14   1.3e-10       2     127 .]     527     656 ..     526     656 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 2.8e-14
                     EEEEEETTTGEEEEETTCTTSTEBEEEEE-TSCCGGGEEEEE..TTSEEEETT..TTEEEEES.SSSTTSBEEEEETTTTSGGGCEEEETTTTE. CS
  Ricin_B_lectin   2 sgeirnvasgkCLdvegeskagapvglydChgskgkQlwtlt..kdgeirska.qselCldvs.staegakvvlakChkgkgnqrWefdkdgtq. 91 
                     +++i+nv++g+ Ld+ g+ + ga v++++  +s++   w+l   + g +r+++ ++++ +d+  +ta+ga+  +a+++ g++nq+W++++ g++ 
      KIR61342.1 527 YVKIKNVTTGLVLDSGGSVASGAVVKQWSDGSSTN-LHWQLVdvGGGYYRIVNrTNGMVIDSWgNTANGASALQAPWN-GGNNQQWRLTSMGNGr 619
                     689**************998899999999988866.8888776677999999988999999889*************9.999******9999888 PP

                     ..EEETTTSEEEEESTTSSTTTBEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  92 ..irhkksgkCLdvkgasksneklilkkcdsgsdsQkW 127
                       i+++ +g+ Ld +g+ +s + + +++  ++s++ +W
      KIR61342.1 620 yqIINRGTGTALDGAGNATSGSTVGMWAP-DSSTNLQW 656
                     88***************99988*****77.88888888 PP

>> Fucosidase_C  Alpha-L-fucosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.28   1.3e+03       7      33 ..      86     115 ..      81     120 .. 0.72
   2 !   19.9   0.0   1.8e-07   0.00081       6      90 .]     423     510 ..     419     510 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.28
  Fucosidase_C   7 pnvwYT...skkkekavYaivlewPkdnel 33 
                    n+w T   +++++k+vY     wP++n +
    KIR61342.1  86 RNMWNTgsaENNHHKSVYGDPSAWPYHNFI 115
                   688988532233555***********9976 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 1.8e-07
  Fucosidase_C   6 tpnvwYTskkkekavYaivlewPkdnelelgslvktskss...stqvtllGl..geklkwks..skkglkielpqlkidklplkwawtlklt 90 
                    +++ +T++k+++ +Ya+vl wP  + l++++l+++   +    t+  llG+  g+ ++     +  gl+ ++p+   ++     a+++klt
    KIR61342.1 423 AQDIRFTRSKDNTVLYATVLGWPGAT-LTIATLGSNRI-NlgnLTSARLLGTtaGTYIDLPRtqDGGGLRLTMPS--SNAPFSALAYVVKLT 510
                   6899***999999**********875.55555544322.112379*****986556666655315599******4..333334679999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 4963.67
//
Query:       KIR61343.1  [L=374]
Description: spermidine/putrescine ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-35  122.5   0.0    2.5e-35  122.0   0.0    1.3  1  ABC_tran         ABC transporter
    1.2e-05   25.3   0.3       0.13   12.0   0.0    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    4.7e-05   23.5   0.8    9.6e-05   22.5   0.2    2.0  1  TOBE_2           TOBE domain
    0.00017   21.5   0.0    0.00032   20.6   0.0    1.4  1  RsgA_GTPase      RsgA GTPase
     0.0033   17.8   0.4     0.0076   16.6   0.4    1.7  1  AAA_16           AAA ATPase domain
     0.0046   16.7   0.1      0.014   15.2   0.1    1.8  1  AAA_29           P-loop containing region of AAA domain
     0.0085   15.6   0.0        1.5    8.2   0.0    2.1  2  SMC_N            RecF/RecN/SMC N terminal domain
     0.0095   15.5   0.1      0.028   14.0   0.1    1.7  1  AAA_25           AAA domain
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.019   14.9   0.0    1.2  1  Rad17            Rad17 P-loop domain
      0.016   15.8   0.5      0.086   13.4   0.1    2.6  2  CysA_C_terminal  CysA C-terminal regulatory domain
      0.051   14.1   0.0      0.077   13.5   0.0    1.2  1  AAA_23           AAA domain
      0.077   12.4   0.0       0.22   10.9   0.0    1.7  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.081   13.2   0.3       0.18   12.1   0.3    1.8  1  AAA_22           AAA domain
       0.18   11.4   0.0       0.28   10.7   0.0    1.3  1  AAA_27           AAA domain
       0.29   11.6   0.0       0.46   10.9   0.0    1.3  1  RNA_helicase     RNA helicase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.0   2.1e-38   2.5e-35       1     136 [.      26     168 ..      26     169 .. 0.94

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 2.1e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..........esdeeiekal 89 
                 l+ ++l++ +ge va++G++G+GKSt l+llagll+pt G i ldg+ +++  l+  ++ ig+++q+  lfp+ltv++n           + e++e+++
  KIR61343.1  26 LESLDLDVPAGEFVALLGPSGCGKSTALNLLAGLLEPTTGAISLDGRRIDR--LPPEKRGIGMVFQNYALFPHLTVADNiafglrmrgcPKPERVERVR 122
                 57899**********************************************..************************************8888888888 PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + l+l+ l+++  ++ p++LSgGq+qrva+ara++ +p+l+l+DEp 
  KIR61343.1 123 RALDLVRLRAQA-DRYPRQLSGGQQQRVAIARAVVVEPRLVLMDEPL 168
                 888888866555.7889*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00011      0.13       1      54 [.      38      79 ..      38      86 .. 0.73
   2 !   11.6   0.1   0.00015      0.18     232     300 ..     136     202 ..     116     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydp 54
                + +l Gp g+GKS+ L +l +l             ++ +g i+ + +++d+  p
  KIR61343.1 38 FVALLGPSGCGKSTALNLLAGLL------------EPTTGAISLDGRRIDRLPP 79
                679****************9994............4555555555555555555 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00015
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSpl 300
                 + +r+lS G+++  a++ a+   +   +l+l DEp ++L+ +l   l + +++l++  g   i +TH+ +
  KIR61343.1 136 RYPRQLSGGQQQRVAIARAVVVEP---RLVLMDEPLSNLDASLRLDLRTEIRSLHQqLGLTTIYVTHDQV 202
                 678899999999988888888877...************************8888889*********965 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.2     8e-08   9.6e-05       2      76 .]     281     353 ..     280     353 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 8e-08
      TOBE_2   2 aiRPEklrla..aagg.anglsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswdpddavvl 76 
                 +iRPE+l +   + gg +n ls  V+ +ey+G +  +  + +gg l  ++  + +   +++pG++    + pd+++ +
  KIR61343.1 281 MIRPEDLLITreSGGGtGNELSIDVRVCEYQGRTFAVEGTGPGGHL--LHGRSDQ---PFRPGERAVAVVAPDRIRTF 353
                 7********9963333468*************************99..3333444...9******9999999998765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.7e-07   0.00032      98     132 ..      35      69 ..      16      73 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.7e-07
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktgevse 132
                  ++++++l+G+SG GKSt +n l++ le  tg++s 
   KIR61343.1  35 AGEFVALLGPSGCGKSTALNLLAGLLEPTTGAISL 69 
                  45899***************************996 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.4   6.3e-06    0.0076      20      59 ..      34      72 ..      23     216 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.3e-06
      AAA_16 20 rsgrpelvllsGesGvGKsslvrellralekd.ggiflrgk 59
                 +g  e v l G+sG+GKs+ ++ l+  le + g+i l g+
  KIR61343.1 34 PAG--EFVALLGPSGCGKSTALNLLAGLLEPTtGAISLDGR 72
                344..89******************9877777423334444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.1e-05     0.014      15      50 ..      27      64 ..      19      68 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-05
      AAA_29 15 htieid.lkg.atlltGpsGsGKSTllDAiqalLvpak 50
                +++++d ++g ++ l GpsG GKST l  ++ lL p++
  KIR61343.1 27 ESLDLDvPAGeFVALLGPSGCGKSTALNLLAGLLEPTT 64
                5555552345799*************988888888876 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0      0.01        12      24      41 ..      36      53 ..      16      61 .. 0.76
   2 !    8.2   0.0    0.0012       1.5     126     204 ..     130     204 ..     100     220 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.01
                SSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnll 41
                 +f a++Gp G+GKs  l
  KIR61343.1 36 GEFVALLGPSGCGKSTAL 53
                4699***********755 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0012
                 HHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 126 llesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlek 204
                 l ++a+ ++ +LSgG+++ va+a  + +   +   l+l+De  ++LD++ +  + + +++ +++  +  i ++++++e 
  KIR61343.1 130 LRAQADRYPRQLSGGQQQRVAIARAVVV---E-PRLVLMDEPLSNLDASLRLDLRTEIRSLHQQLGLTTIYVTHDQVEA 204
                 55555666779*******9999866433...3.4599**********************99988665555555444443 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   2.3e-05     0.028      30      53 ..      33      56 ..      16      68 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.3e-05
      AAA_25 30 lpagelallaGapgtGKttlaldl 53
                +page+++l G++g+GK+t++  l
  KIR61343.1 33 VPAGEFVALLGPSGCGKSTALNLL 56
                49*****************87554 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.6e-05     0.019      48      69 ..      39      60 ..      24      66 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.6e-05
       Rad17 48 LLisGPsGCgkstvvkvLskel 69
                + + GPsGCgkst+++ L+  l
  KIR61343.1 39 VALLGPSGCGKSTALNLLAGLL 60
                5678*************99655 PP

>> CysA_C_terminal  CysA C-terminal regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       6.3   7.5e+03      14      23 ..      26      35 ..      24      39 .. 0.74
   2 ?   13.4   0.1   7.2e-05     0.086       1      41 [.     245     287 ..     245     289 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 6.3
  CysA_C_terminal 14 iGglalpvPe 23
                     + +l+l+vP+
       KIR61343.1 26 LESLDLDVPA 35
                     5689999993 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 7.2e-05
  CysA_C_terminal   1 NlFhGrvedGklriGglalpvPelaga...dgqevvayVRPhDl 41 
                      N  +G++  G +  G +al +  ++g+   ++++vva +RP+Dl
       KIR61343.1 245 NSVPGKLTAGVVDAGPVALRID-DPGSglpEQGSVVAMIRPEDL 287
                      66789999********888888.4444467999**********9 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.4e-05     0.077       7      40 ..      20      57 ..      18      80 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.4e-05
      AAA_23  7 frsfrdqe.idF...skgltlItGpNGaGKTTildAik 40
                f+sf   e +d+      ++++ Gp G+GK+T l+ + 
  KIR61343.1 20 FGSFAALEsLDLdvpAGEFVALLGPSGCGKSTALNLLA 57
                89995544477755655799**************9876 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00018      0.22      22      76 ..      36      90 ..      18     118 .. 0.77
   2 ?   -1.9   0.0       1.6   1.9e+03     175     197 ..     131     153 ..     109     159 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00018
  Mg_chelatase 22 gHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkkeeekllkrr 76
                  g  + l+Gp+G+GK+   + l++ll p + + +l+ ++i  +  +k+  +++ + 
    KIR61343.1 36 GEFVALLGPSGCGKSTALNLLAGLLEPTTGAISLDGRRIDRLPPEKRGIGMVFQN 90
                  4557899*********************999999988887776655555555555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.6
  Mg_chelatase 175 ekeierYlsklsgplldRidlqv 197
                    ++ +rY ++lsg    R+ +  
    KIR61343.1 131 RAQADRYPRQLSGGQQQRVAIAR 153
                   57889999999999999998865 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   0.00015      0.18       7      29 ..      38      60 ..      35     205 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
      AAA_22  7 ilvvtGesGtGKTtllrrlleql 29
                ++++ G+sG+GK+t l+ l+  l
  KIR61343.1 38 FVALLGPSGCGKSTALNLLAGLL 60
                7899************9998776 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00023      0.28       9      49 ..      18      59 ..      11      61 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
      AAA_27  9 eryGkftd.rsldfsaeeadlhliyGpNEAGKstalrAisdl 49
                +++G+f+  +sld++  + ++  ++Gp   GKstal+ +  l
  KIR61343.1 18 RKFGSFAAlESLDLDVPAGEFVALLGPSGCGKSTALNLLAGL 59
                68****87469************************9977666 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00039      0.46       2      21 ..      40      59 ..      39      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00039
  RNA_helicase  2 wlyGpsgeGKStlakeLaka 21
                   l Gpsg+GKSt+ + La  
    KIR61343.1 40 ALLGPSGCGKSTALNLLAGL 59
                  589***********998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2694.24
//
Query:       KIR61344.1  [L=314]
Description: hypothetical protein TK50_27085 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-12   47.5  13.6    1.7e-12   47.5  13.6    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   1.2     0.025   4.5e+02      26      41 ..      37      52 ..       9     104 .. 0.70
   2 !   47.5  13.6   9.2e-17   1.7e-12       9     171 ..     113     297 ..     105     307 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.025
  BPD_transp_1 26 vllslPsfvlaillvl 41
                  ++l++P +v+++++++
    KIR61344.1 37 LWLAVPGVVFMVVFFV 52
                  3445555554444332 PP

  == domain 2  score: 47.5 bits;  conditional E-value: 9.2e-17
  BPD_transp_1   9 a..lnrnkkldkllrpliivllslPsfvlaillvlvf..............vilsilg..hlilpviillllsaapyvrlirraalrslpkdlveaa 87 
                      ++r+ + ++ ++ ++ v+++l ++ +a  +  ++              vi++ l+    +++v++ l+++ +p+++l++ ++ + ++ +l++aa
    KIR61344.1 113 SyrMRRRVRAKRTIMAIVLVPMTLGTVFVASAMKEFLgpsgwlnrallntgVIDQPLQlvGNFTGVLLSLVFTGLPFAFLLMVGYTSGIDPSLEQAA 209
                   234779999*******************9999997669999999999999966666665245666999999999*********************** PP

  BPD_transp_1  88 ralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG....lgtllleailgydyseisnggvlalviavlllnlv 171
                    ++Ga++ q+f+ v++P++lp +  +++l+f++++g +  + ++g++ G    l+    + +++  y+ +s+++v+++v+ +++l lv
    KIR61344.1 210 AVCGARPAQRFWLVTFPLLLPGMTITFCLSFVLAFGVFPSATLVGNDAGptrvLSKIAYTEYSYGHYPTASATAVVMAVVQLAVLGLV 297
                   ***********************************************99877777777777777777777755555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2150.02
//
Query:       KIR61345.1  [L=296]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-12   47.9  13.9    1.3e-12   47.9  13.9    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   4.3     0.035   6.2e+02     111     172 ..      41     104 ..      37     114 .. 0.68
   2 !   47.9  13.9     7e-17   1.3e-12       2     176 ..     106     282 ..     105     284 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.035
  BPD_transp_1 111 itglilafggllggavlleflgswpG.lgtllleailgydyseis.......nggvlalviavlllnlva 172
                   + gl+la++ +l +++ + +  +w +   t+++ a+++  +++++       +      ++av++++lv+
    KIR61345.1  41 VGGLLLAVATVLLASLTAQLAEGWLPrTYTTRWYAQSWATFDLGQllvttveV------GVAVVAVTLVV 104
                   66888888888888888888888877888889999999999999996666442......33333333332 PP

  == domain 2  score: 47.9 bits;  conditional E-value: 7e-17
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqif 98 
                   +++++++a +  ++++kll+ l+ v++ +P++  a++l  + v    l ++  +++++ l+ a+p+++l+   ++++++   ++aar++Ga+ +++f
    KIR61345.1 106 LPTAYVLA-RLTFPGRKLLLLLFLVPQVVPVMTYAVPLATL-VYRLRLNDTLAGIVLVNLVPAIPFAVLVLIPFVEQIDPRVEQAARVCGATNRRVF 200
                   68888999.9999********************99887754.456689999999******************************************* PP

  BPD_transp_1  99 rkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis......nggvlalviavlllnlvadilq 176
                   ++++ P+++p +++  +l++++++g++ l+ ++  +p  +++l+ a+ g  ++++       n++++++ + +l+l+lva  ++
    KIR61345.1 201 VHILGPLLVPGLLAAGVLTLVRVVGQFELTFLVS-GP-DSQTLVVALYGAAVQAGElasqeiNAMAVVYMLTTLVLLLVALRFV 282
                   **************************97665555.55.8999999999999998889999999999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2213.65
//
Query:       KIR61346.1  [L=308]
Description: hypothetical protein TK50_27100 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-76  256.1   1.8    4.6e-76  255.9   1.8    1.0  1  PmoA      Methane oxygenase PmoA


Domain annotation for each model (and alignments):
>> PmoA  Methane oxygenase PmoA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.9   1.8   2.6e-80   4.6e-76       2     269 ..      21     302 ..      20     304 .. 0.96

  Alignments for each domain:
  == domain 1  score: 255.9 bits;  conditional E-value: 2.6e-80
        PmoA   2 veltvdgkpltrYvyapdldaaespkpylhPlrtlaGtvvTrgrpadHpHHrGlwfawsdvngvdfWngr.......ytelkkkkGtirhkgfeeveag 93 
                 v+++v  ++l++Yvy+ ++d++e p p++hP+rt+aG++v+ +rp+dH++H+Gl +++s+++g +fW+g        y++l++  G+ rh+ f++ + g
  KIR61346.1  21 VTVSVRHQELMSYVYGAETDPWECPAPFFHPIRTTAGNLVSAHRPHDHRWHKGLAMTISHLSGDNFWGGYsyvrdegYRRLDNV-GSLRHRAFSRFDVG 118
                 8899************************************************************************99888888.************** PP

        PmoA  94 kdkatlteeleWldadgkelLeErrtvtvsadde...awlldfdstltalsd.pvtlgspk........yGglfwRvarelaeaaggrvltsegkegee 180
                  d+  lte+++W++a g++++eErr ++v++ d    +w l++ + lt++s+  + +gsp+        y+g+fwR++r+l+   gg++l + g+eg  
  KIR61346.1 119 VDRLDLTEQVRWHNARGRHWIEERRDIAVHDADAaggTWELTVATALTNVSGgRLDIGSPTvfgreaagYSGFFWRGPRDLT---GGTILAAGGLEG-P 213
                 ******************************6666888999*****************************************5...************.* PP

        PmoA 181 evwgkrapWvalsgkigeged.vgivildhpsnpnyPtywfvRtyglfaanpsalafdeeltlepgesltlryrvvvadgaldaeeiaal 269
                 +v+g+ra+W+a++g+++  ++ +++v++ +p   + P  wfvR+++++a+np +laf+ e+t+++g +l++ryrvvvadg++da++++ +
  KIR61346.1 214 QVMGRRAAWLAYTGPHDVVDAsSTLVVVPDPGAEDSPPVWFVRNEPFPAINP-SLAFADEVTVPAGATLRRRYRVVVADGTWDADRVEGY 302
                 ****************655448******************************.*********************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2136.32
//
Query:       KIR61347.1  [L=572]
Description: hypothetical protein TK50_27110 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0017   18.6   7.8     0.0033   17.7   0.1    3.8  4  CBM_6           Carbohydrate binding module (family 6)
  ------ inclusion threshold ------
       0.06   11.9   0.1       0.09   11.4   0.1    1.2  1  Glyco_hydro_39  Glycosyl hydrolases family 39


Domain annotation for each model (and alignments):
>> CBM_6  Carbohydrate binding module (family 6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.32   2.9e+03      48      73 ..       7      32 ..       2      37 .. 0.80
   2 ?    2.3   0.5     0.021   1.9e+02      22      62 ..     302     343 ..     289     347 .. 0.81
   3 ?   -1.0   0.0      0.23   2.1e+03      97     120 ..     357     381 ..     354     386 .. 0.74
   4 !   17.7   0.1   3.6e-07    0.0033      19     123 ..     465     568 ..     453     570 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.32
                EEEEEEEESSSEEEEEEEESSTTSSE CS
       CBM_6 48 svearvasgaaggsielrldsatgtl 73
                 vea +a++aa+++i++  +   g+ 
  KIR61347.1  7 AVEAPAAQAAATSTITVDYGADRGPA 32
                588999999999****9999877765 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.021
                 SEEEE---TT-EEEEEEEEESSTEEEEEEEEEEESSSE.EEE CS
       CBM_6  22 gkavgyinnGdwlaYkdvdfgsggaysvearvasgaag.gsi 62 
                 +ka g   +G w  Y+ +++ +g   +v+++ a+++ + gs+
  KIR61347.1 302 DKATGTLPKGVWWNYNTYKTMTGRMVNVTSSSATTVDAlGSL 343
                 5677888899***************99998888777665766 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.23
                 E-SEEEEEEEEEECSST.---EEEE CS
       CBM_6  97 lptGvhdlylvftggae.ylfnldw 120
                 +++G +d++l+++  +  +l n+ +
  KIR61347.1 357 QTAGDQDVSLRLNNASAlALSNVVH 381
                 5669999999999866677777755 PP

  == domain 4  score: 17.7 bits;  conditional E-value: 3.6e-07
                 TTTSEEEE---TT-EEEEEEEEESSTEEEEEEEEEEESSSEEEEEEEESSTTSSEEEEEEE--.-SSTTEEEEEEEEEEE-SEEEEEEEEEECSST... CS
       CBM_6  19 agggkavgyinnGdwlaYkdvdfgsggaysvearvasgaaggsielrldsatgtlvgtvsvps.tggwqtyvtvsanvtlptGvhdlylvftggae... 113
                  g + a+ +++ G +l+++ + + ++g y+++a     ++ +   l++d+     v + + +  +g++  y t   +v+l++G+h+++ v+ g+++   
  KIR61347.1 465 GGAAAALDGTARGQYLQFT-LPVSTSGVYDLRAVLKRLTNRAFHALYIDG-----VMVGPPQDgYGNVGYYGTDYGTVSLAAGNHTVRAVAVGKNPsst 557
                 447778889999*******.9999****999988877777766689****.....6777776669****************************999999 PP

                 .---EEEEEEE CS
       CBM_6 114 .ylfnldwfkf 123
                  y++ +d f +
  KIR61347.1 558 gYVMVFDRFDL 568
                 99999998876 PP

>> Glyco_hydro_39  Glycosyl hydrolases family 39
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1     1e-05      0.09     162     234 ..     142     212 ..     118     232 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1e-05
  Glyco_hydro_39 162 WnePdlkdFdkvattkeylklYkaaaealkkvseelkvGGPalctgldewieeltnFfteelvrlDfislHkk 234
                     WneP+ +  +    t+ y++  k+a  a+k+ +++ +v  P l+    + +++++ ++ ++    D +s H+ 
      KIR61347.1 142 WNEPEAQ--WGSRYTTTYFQAHKVAYDAVKARNSSYRVEAPELSAYNFTKLQQFLIYCRDNRCLPDVLSWHEL 212
                     ****986..66777788**************************9999999***********988899999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4166.88
//
Query:       KIR61348.1  [L=514]
Description: hypothetical protein TK50_27135 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-28   97.6   0.2    2.2e-27   96.2   0.2    1.8  1  DUF3502     Domain of unknown function (DUF3502)
  ------ inclusion threshold ------
      0.034   14.1  14.2      0.025   14.5   9.3    2.5  2  SBP_bac_1   Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> DUF3502  Domain of unknown function (DUF3502)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.2   2.5e-31   2.2e-27       1     130 []     381     511 ..     381     511 .. 0.83

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 2.5e-31
     DUF3502   1 GiEGkhYekvedgkieklpegkkynvps.....walgnq.firyllegepe.dkwek.vkefneeakaspalgFtfDsspvkteiaalsnvveeykkal 91 
                 GiEG++++ v++++ e l++ ++   ++     w    +   +y++e+e++   w++ +++f    + +p++ F+ D++pv+++iaa+++v+++y+++l
  KIR61348.1 381 GIEGTDWKPVGEDRFEALTQYSS---FPgyavsWRASLErKASYMTESEERvFSWAQdYDNF----TVDPFASFVPDNKPVEQQIAAMTTVITQYANPL 472
                 9************9888777555...333442354443333444555555459998889999....77******************************* PP

     DUF3502  92 etGlvDpeetlpkfneklkaaGidkviaelqkQldafla 130
                 ++G+vD++ +l+k+++++ aaG+dk++ae++kQ+d +la
  KIR61348.1 473 YYGVVDVDPQLDKLKKAAAAAGVDKLLAEMEKQADSYLA 511
                 *************************************96 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   9.3   2.8e-06     0.025      13     295 ..      57     356 ..      51     375 .. 0.70
   2 ?   -2.7   0.2      0.51   4.5e+03      94     119 ..     451     474 ..     426     500 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.8e-06
                 HHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEE.CGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE.EE... CS
   SBP_bac_1  13 lvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviav.dndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkilds.kv... 106
                  v++++ k+ +g    ++++ +++++q+  l + +G    D +    +  +a+l + g+l++l++ v++     + +         ++  + + ++   
  KIR61348.1  57 KVNEKL-KADTGLSLDVQFINWQNYQQQALLKFTSGETF-DTALQaLWLNMAQLQQDGALADLTAEVDKHQ---NLR------ATLDDRLIKAnRWdgr 144
                 564555.559***************************55.666666788889**999************93...222......2344555556566899 PP

                 ES.EEEE.E.EEE..EEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCT................HCCHCCEEHHHHHHHHHHHHHHHHTGGGEECC CS
   SBP_bac_1 107 ly.vPly.a.arg..liYNkdlfekagldppwtWdelveaakklkekgkkp................iggarggsasgtayyfalalakslggkvfdkd 184
                 l+ +P+  +  r   ++++ dl +k g ++ + +d+l +    +k  g+++                +   ++  +s++  ++         ++ f+++
  KIR61348.1 145 LWgIPQVnSaGRCqhFAVRQDLADKLGFGEITDYDTLERFFYAVKQRGGGTipyghnsasgylgvvpYPAGMFNVQSWQDPHTI--------ARAFTGR 235
                 ******988776655999*********999*********************888888888888877744444444444444444........4445555 PP

                 CT.................HHCSHHHHS.HHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTT CS
   SBP_bac_1 185 gg.................gldnpegvt.aatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpk 265
                 g+                  + +++gv  a   ++  y      ++  +k+a+n+d++ ++++++aG+ a++++ +          + ++  ++  k+ 
  KIR61348.1 236 GMffvfakdaaqtrasrpvPFWDDPGVLdAMRRIRRYY-----LDGIINKDATNADVDTVKSQWAAGKYAATWAMTDG--------TTSNVMPALTKAV 321
                 55776666666787777773334444442555555555.....6799************************9988776........4444444444444 PP

                 STEEEECE.EBETTTTSEE...EEEEE.EEEBTTC CS
   SBP_bac_1 266 eelgvapl.Pagkggkpgi...lgayg.laipkgs 295
                 +   va + P+gkg + +    + a++ ++++++ 
  KIR61348.1 322 PGAMVADViPYGKGLNAKPnqtFQADNlVVVNANG 356
                 43333333344444333335588888845555554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.51
                 HHHHTHHHHCE.EE..ESEEEEEEEEEEE CS
   SBP_bac_1  94 sssvlpkilds.kv..lyvPlyaargliY 119
                 ++ v + i ++ +v  +y     a++l+Y
  KIR61348.1 451 NKPVEQQIAAMtTVitQY-----ANPLYY 474
                 333445555555556666.....666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3710.62
//
Query:       KIR61349.1  [L=249]
Description: hypothetical protein TK50_27140 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-24   87.1  22.4    2.9e-24   86.9  22.4    1.0  1  Abhydrolase_6    Alpha/beta hydrolase family
    8.3e-22   78.1   0.3    3.4e-20   72.8   0.2    2.1  2  Abhydrolase_1    alpha/beta hydrolase fold
    1.5e-10   40.8   0.1    2.3e-10   40.1   0.1    1.3  1  Hydrolase_4      Serine aminopeptidase, S33
      3e-06   26.2   0.0    3.8e-06   25.8   0.0    1.1  1  Ndr              Ndr family
     0.0029   16.6   0.1     0.0044   16.0   0.1    1.2  1  Chlorophyllase2  Chlorophyllase enzyme
  ------ inclusion threshold ------
       0.18   11.2   0.0       0.29   10.5   0.0    1.3  1  DUF3530          Protein of unknown function (DUF3530)
       0.24   10.4   0.1       0.36    9.8   0.1    1.2  1  Chlorophyllase   Chlorophyllase


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9  22.4   1.1e-27   2.9e-24       1     219 [.      23     241 ..      23     242 .. 0.64

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 1.1e-27
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHH....HHHHCCTT..TTSEEEEEETCHHHHHHH..HHHCC...E CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldledladl....aalldelaagggpvvlvGHSlGGalala..aapla.lvv 89 
                    +ll+HG g++ ++W   p+  ++++ ++++a+Dl+GhGrs+ pp+++++  dl    a+ll++l  g gpvv+vGHS+G+ +++a  + + + lv+
     KIR61349.1  23 LLLVHGWGGDLRVWD--PI--RFPG-HRTVAVDLRGHGRSPAPPDGYRP-PDLagdlARLLTRL--GIGPVVAVGHSMGAQVVTAlaVEH-PaLVS 109
                    79****888888886..77..2233.4779*******************.55532237777777..6*************9888842333.34666 PP

                    E.EEES-..----TTT.....S----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHH.CCCCHCHCCCGHHHHCCHHCHTT..CCHHTT-TTGCEEE CS
  Abhydrolase_6  90 g.vlldppptalpagl.....laaalelllallallrllawlsreplprlfladed.adaawrarlarlaallaglgllp..aaawadlpvpllvl 176
                    + v++dp   a++a++     ++++l+ ++a +a++   a++ + plp++  +++  +  ++ a+  +++ +++g + ++   +a+ +++++  vl
     KIR61349.1 110 AlVVIDP---AYGADDeeavsFHDRLARIRAGGARA---ALDPAVPLPPGVPEQMLaTPGPVLAACYAGLYTDPGAFGHRpaTEAYLRRRTQP-VL 198
                    69*****...88888878655333333333333333...333322344555553331233333333333333333332222377888888888.66 PP

                    C....TT-CHHHHCHHCCCHSTTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 177 g....geDplvprllerllaqagarlpvvlpgaGHlphleepdevae 219
                    +    +e + +   +++ +  +g r+ vv+pg+GH++hle+pd++ +
     KIR61349.1 199 ClralAEPARWE--AAQPAP-PGSRV-VVWPGTGHFLHLEHPDRTSR 241
                    755333333444..667777.*****.****************9875 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.2   1.3e-23   3.4e-20       1     117 [.      21     121 ..      21     150 .. 0.86
   2 ?    3.6   0.0     0.017        43     237     257 .]     216     236 ..     199     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 1.3e-23
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeype 96 
                    p+l+++hG++g + vw        + + g++++++DlrG+g+S+++p    d y+  ++a dl r+l +lg+++++ vGhSmG ++++a+a e+p 
     KIR61349.1  21 PTLLLVHGWGGDLRVWDP------IRFPGHRTVAVDLRGHGRSPAPP----DGYRPPDLAGDLARLLTRLGIGPVVAVGHSMGAQVVTALAVEHPA 106
                    78*************999......6677*******************....68******************************************* PP

                    GEEEEEEESECSSCCHHHHHH CS
  Abhydrolase_1  97 rVkalvllgaidpaaslieaq 117
                     V+alv +++         a+
     KIR61349.1 107 LVSALVVIDP------AYGAD 121
                    *********9......22222 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.017
                    HTSEEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 237 lpkkrlvvisdagHlaflegp 257
                     p++r+vv +++gH+++le+p
     KIR61349.1 216 PPGSRVVVWPGTGHFLHLEHP 236
                    6789**************997 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.1     9e-14   2.3e-10      30     121 ..      42     127 ..      19     152 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 9e-14
  Hydrolase_4  30 qGfavyalDhrGhGrse.gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikaklkapp 121
                   G  ++a+D rGhGrs+ +  g   +  d+  Dla +++++       p++ +GhSmG+ ++++++ ++p+ v++l+++ Pa++ + + +a +
   KIR61349.1  42 PGHRTVAVDLRGHGRSPaPPDG--YRPPDLAGDLARLLTRLG----IGPVVAVGHSMGAQVVTALAVEHPALVSALVVIDPAYGADDE-EAVS 127
                  68899***********765566..5667999***99986666....88**********************************998866.3444 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.5e-09   3.8e-06      84     134 ..      68     118 ..      38     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.5e-09
                 HHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES--- CS
         Ndr  84 dladqllavldhfklksviglGvgaGAyilarfalkhperveglvLinits 134
                 dla +l  +l+ + +  v+++G   GA +++  a++hp +v++lv i++  
  KIR61349.1  68 DLAGDLARLLTRLGIGPVVAVGHSMGAQVVTALAVEHPALVSALVVIDPAY 118
                 79*********************************************9865 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.7e-06    0.0044      93     132 ..      86     122 ..      75     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.7e-06
  Chlorophyllase2  93 alsgHSrGgktafalalgkaktslkfsaligvdPvagask 132
                      + +gHS G++++ ala+++ +    +sal+++dP  ga+ 
       KIR61349.1  86 VAVGHSMGAQVVTALAVEHPA---LVSALVVIDPAYGADD 122
                      567******************...9*********988664 PP

>> DUF3530  Protein of unknown function (DUF3530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00011      0.29     197     244 ..      83     130 ..      74     138 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
     DUF3530 197 enivllghgtgAywaarylaekksakvdaLvlvdarepaeaa.ekqLae 244
                   +v +gh  gA+ ++ +  e  +a v+aLv++d+   a+++ + ++ +
  KIR61349.1  83 GPVVAVGHSMGAQVVTALAVE-HPALVSALVVIDPAYGADDEeAVSFHD 130
                 568999**********99999.*************99888853344555 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00014      0.36     124     163 ..      87     124 ..      79     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00014
  Chlorophyllase 124 lvGhsrGGktafalalgysseltfsaliGvdPvaGtskdk 163
                      vGhs G +   ala+ +     +sal+ +dP  G + ++
      KIR61349.1  87 AVGHSMGAQVVTALAVEHP--ALVSALVVIDPAYGADDEE 124
                     58****************9..679*********9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1855.66
//
Query:       KIR61350.1  [L=212]
Description: Crp/Fnr family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-72  244.5   0.1    1.4e-72  244.3   0.1    1.0  1  ThuA      Trehalose utilisation


Domain annotation for each model (and alignments):
>> ThuA  Trehalose utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.3   0.1   7.6e-77   1.4e-72       1     210 []       3     208 ..       3     208 .. 0.97

  Alignments for each domain:
  == domain 1  score: 244.3 bits;  conditional E-value: 7.6e-77
                 EEEEEE-..-.SHHHH-...HHHHHH-HHHT-EEEEETTS.G--HHHHHT-SEEEEE-G..GS-HHHHHH.HHHHHHTT-EEEEEGGGGS.....HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThuA   1 rVLvfsgtagerhdsieaaieaieklgkengfevdatedaavfteenLaqydvvvflstegevldaaqeaalqryveaGgGfvglhsAadaeerskwfs 99 
                 r+L+f++t+g+rhdsi+a++ ++++l      +++ ted+a+ft +nLa++ +vvfl+t+g+vl++a ++a+++yv++GgGf+g+hsAa +e+ + +++
  KIR61350.1   3 RILLFTRTTGFRHDSIPAGVRTMRELHD----AAENTEDPAAFTPDNLARFAAVVFLNTNGDVLTDAGRTAFEAYVRGGGGFLGVHSAAATEYGWAFYR 97 
                 79**********************9999....7789****************************************************999******** PP

                 .HH-SEEEEET............TSGGGTT--.SEEEEEEEEE-S---SE..EEEEE.................ETE...TTEEEEEE----TTSGGG- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThuA 100 gLiGarfvghppvqeatvkvedrshpateglpeewertdewYnfkpnprgvhvlatvdestydp..ngadhPiaWcreydgkGrvFytalGhteesyee 196
                 +L+Ga f++hppvq+a+++v ++ hpat++lp++wer dewY f++ p++ +vl+++desty +  +g dhP+aWc+e  g Gr+FytalGht esy e
  KIR61350.1  98 ELVGAWFDRHPPVQPARITVAEPRHPATAHLPTTWERVDEWYDFRSRPDA-RVLLRADESTYRGgtMGGDHPLAWCHERCG-GRSFYTALGHTVESYAE 194
                 ********************************************775555.************778***********9978.***************** PP

                 HHHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxx RF
        ThuA 197 pefrkhllgglkWa 210
                 pefr+hl+g+l+W+
  KIR61350.1 195 PEFRAHLAGALRWV 208
                 *************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1595.40
//
Query:       KIR61351.1  [L=881]
Description: glycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-108  363.4   0.0    1.4e-96  324.1   0.0    2.1  2  Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
    9.5e-32  110.3   0.9    2.2e-31  109.1   0.9    1.7  1  Laminin_G_3      Concanavalin A-like lectin/glucanases superf


Domain annotation for each model (and alignments):
>> Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   1.2e-13   1.1e-09       1      97 [.      26     125 ..      26     130 .. 0.94
   2 !  324.1   0.0  1.5e-100   1.4e-96      99     516 ..     330     740 ..     327     743 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 1.2e-13
                      CEEE-SSHHHHHHHHHHHCHHHCHHHHHHHHHHHHTT---.SS---SGGG..----TTT-TTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH CS
  Glyco_hydro_127   1 dVrltdsffldrqetvreyllaldpdrlletfrkeaglps.kaeaaggwe..dektgeelrdgdlgkwleavalllastkdkelekrldrlvde 91 
                      dV+l d++f+ +++ + +     d+drll+ fr++agl+   a+a ggwe  d   + +lr++++g++l  +a+++ast+++ + +r++++v +
       KIR61351.1  26 DVELGDGLFAAKRSLMLDFARGYDVDRLLQVFRTNAGLDTlGAVAPGGWEglDGEANGNLRGHFTGHFLTMLAQAYASTGEQVFADRIHYMVGA 119
                      699***********************************98356799****99999999************************************ PP

                      HHHHCH CS
  Glyco_hydro_127  92 lakaQq 97 
                      la++ q
       KIR61351.1 120 LAEVRQ 125
                      *99865 PP

  == domain 2  score: 324.1 bits;  conditional E-value: 1.5e-100
                      SS-B-GCCTHH........SSEETTEESH----HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCS-CCHHHHHTTT....HHCTH CS
  Glyco_hydro_127  99 dGYlsavtelk........neakkeawapdshelYnlgkliegavayyqatgkeklldvatrladyleevleklgdeqlqkalvp....ehggi 180
                       G+l a++e +        + + + +wap    +Y+++k++ g++++y+a g+  +ld+at l d+++++l++l de+ q+++      e+ggi
       KIR61351.1 330 PGFLAAYPETQfitlesmtESRYTVVWAP----YYTAHKILRGLLDAYRAVGDPVALDLATGLCDWMYARLSVLPDETRQRMWGIfssgEFGGI 419
                      599*****99999999998889999****....*************************************************9766677***** PP

                      HHHHHHHHHHHT-CHHHHHHHHCCHHCCHCCT-HCTTT-SSTCGCHHCHHCCHHHHHHHHHHHHHHHHHCTTHCCHHHHHHHHHHHHHHCB-TT CS
  Glyco_hydro_127 181 eealvklyelTgdkrYldlAkrfidergldpeklaykqdelpvrhqntaigkavRatylysgladvyeetgddkllkaaerlwdnvvtkkmyvt 274
                       ea+ +ly++Tgd+r+  lA+ f+ + ++d    a+++d l ++h+n++i+ ++       gl ++ e+tg++++l+aa+r+wd v+ ++my +
       KIR61351.1 420 VEAICDLYAVTGDPRHAALARLFDLDSLIDA--CAAGRDVLDGLHANQHIPIFI-------GLVRLHEVTGEQRYLTAARRFWDMVIPTRMYSI 504
                      *******************************..*********************.......********************************* PP

                      S-B-BCEEECE--STT--HCCCH-..-BHHHHHHHHHHHHHHHHCH--CHHHHHHHHHHHHTTGGG....B-TTTS-BBSB--STTTBS--SSS CS
  Glyco_hydro_127 275 GGigakhdgEaFgppyelpnrlay..aEtCasinmlklarrlleltpdakyadvlEralyNsilag....vsldgksffYvnplesgskklrkl 362
                      GG+++    E ++    ++ +l +  aEtC+++n+lkl+r+l+ +++d+ky+d++Era+yN++ ++     + ++  ++Y+ +l +g+ +    
       KIR61351.1 505 GGTSTV---EFWRAAGVIAGSLGEltAETCCAYNLLKLSRMLFLHDRDPKYMDYYERAMYNQVPGSkrdlADAEKPLVTYFIGLTPGHVRD--- 592
                      ******...************99999**************************************87322234566889**********993... PP

                      C-BTTTTT-CHHHHHHHHCCGGGGGSEEEE..TTEEEE-S-SSEEEEECGCT-EEEEEEEE-TTSSSEEEEEEEETT--CEEEEEEE-TT-S-. CS
  Glyco_hydro_127 363 ystkwdscaCCppnglrtvaklgeyiYaes..ddtvyvnLyiaselklklkgkeveleqetnyPwegkvkltvktqkkaeftlklRiPgWaaa. 453
                        t+ ++  CC ++g+++ +k+++++Y+++    ++yvnLy +s+l + + g  +++ q+t+yP  ++++lt+  + + +f l lR+PgWa + 
       KIR61351.1 593 -YTPKEGATCCEGTGMESATKYQDTVYLAAvdGSALYVNLYSPSTLGWAERG--ITVVQDTRYPYAQDTTLTI--HGEGAFDLCLRVPGWARDg 681
                      .35888*********************9995455******************..*******************..9999***********6544 PP

                      EEEEETTEEE--S-STTEEEEEEEE--TT-EEEEEE---EEEEE--TT-CCGTTEEEEEETTE CS
  Glyco_hydro_127 454 atltvnGkkvvvkkksdgYleiereWkkgdkvelelpmsvrleeanpkvrddankvavlrGPl 516
                      ++++vnG++++ ++ +dgYl+i+r W++gd+v + +p ++r+e+a     dd++ + + +GP+
       KIR61351.1 682 FEVQVNGERTAGTAGPDGYLTISRAWRDGDTVGVRIPFRLRVERA----LDDPGIQTLFYGPV 740
                      *********************************************....*************8 PP

>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.9   2.5e-35   2.2e-31       2     152 .]     148     304 ..     147     304 .. 0.85

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 2.5e-35
  Laminin_G_3   2 ggsdyvtlpdaslp.tssfTvsaWvkpdslpsaaqiiissssdg..rgfelgl.dgsgrlrfsvnagng.aeesvtsgasvpageWtHvavtydggtl 94 
                  g+++y++lp + l  t++ T++aWvkp++ +++a+++   ++d+  r+++l++ + +g  rf++ +++  +e+ +++++++p++eW+H+avt+   t 
   KIR61351.1 148 GSYQYLELPATALGaTAEVTLAAWVKPTHDTDWARVFD--FGDDttRYLYLTVrNAAGAPRFAITTTGAeGEQGIDGEQPLPLDEWSHLAVTITCATG 243
                  789*******88866********************999..655556788888854556667665555431677999********************** PP

  Laminin_G_3  95 rlYvNGvevgsatltgglls..atsgplviGrdp.ggddpfdGlidevriynralsaaeIa 152
                  +lYvNGv+vg++t+++  ++  ++  + +iGr++ ++d+ f+G++d v i+ ralsa+e+a
   KIR61351.1 244 TLYVNGVAVGENTAMTLNPEvlGSLTNNWIGRSQyPDDPVFAGALDGVGIWWRALSADEVA 304
                  ************99988444236666779****9888**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (881 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.52
# Mc/sec: 5076.58
//
Query:       KIR61352.1  [L=690]
Description: alpha-galactosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.8e-113  376.8   0.0   1.1e-112  376.4   0.0    1.1  1  Melibiase        Melibiase
      2e-42  145.5   0.0    2.7e-42  145.1   0.0    1.2  1  Glyco_hydro_36N  Glycosyl hydrolase family 36 N-terminal doma
    7.3e-07   29.6   0.0    2.9e-06   27.7   0.0    2.0  2  Glyco_hydro_36C  Glycosyl hydrolase family 36 C-terminal doma
    0.00011   21.4   0.0    0.00019   20.7   0.0    1.2  1  Melibiase_2      Alpha galactosidase A
     0.0052   16.0   0.0      0.007   15.6   0.0    1.1  1  Glyco_hydro_31   Glycosyl hydrolases family 31
  ------ inclusion threshold ------
       0.24   10.5   0.0       0.37    9.8   0.0    1.2  1  GHL10            Glycosyl hydrolase-like 10


Domain annotation for each model (and alignments):
>> Melibiase  Melibiase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.4   0.0  3.7e-116  1.1e-112       3     347 .]     269     602 ..     267     602 .. 0.97

  Alignments for each domain:
  == domain 1  score: 376.4 bits;  conditional E-value: 3.7e-116
   Melibiase   3 qtPevvlvysdkGlnelsqkfhelvrerlvkskfaekerPvllnsWeavyfdfnedklkeladeaaklGielfvlDDGWfgkrnddnssLGDWfvneek 101
                 ++P+  +  ++ G+++ s+++h++ r+r++   + +++rPvl nsWea+ fd++e+  ++la+ aa+lG elfv+DDGWfg r++d+++LGDWf n+++
  KIR61352.1 269 TSPVFAAQRTTGGFGAASRAWHDYQRRRILP--HPDEDRPVLYNSWEATEFDVSETGQRRLAELAARLGAELFVVDDGWFGARTNDRAGLGDWFPNPAR 365
                 7899999999******************876..46899************************************************************* PP

   Melibiase 102 lpdgleelakevhekglkfGlWvePemvsadselyrehPdwvlqvedrsrtesrnqlvLdlsrpdvvdyiievldnllkeaqidyvkWDmnrhlteigs 200
                 +pdgl++la++v+++g++fGlWvePemv++ds+lyr+hPdwvl+ +  + te+rnqlvLd++r+dv++  +  ld+l+++ ++ ++kWD nr  te+  
  KIR61352.1 366 FPDGLRPLADHVRSLGMRFGLWVEPEMVNPDSDLYRAHPDWVLHLPTLPATEGRNQLVLDYTRADVREWALSWLDDLVRSCDLAFLKWDCNRPFTEARP 464
                 ************************************************************************************************988 PP

   Melibiase 201 saldaerqrevahryvlglydilerlttkfpkvlfesCssGGgrfDlGlleyvpqiWtsDntDaverlkiqygtslvyPisalgahvsavPneqtgrat 299
                 +++           + lg+y++l+rl++++p++++e+CssGGgr+DlG l  ++q+WtsDntDav+rl+iq+g   +y + ++ a v+ +Pn  tgr++
  KIR61352.1 465 QSWI---------GHALGVYEVLDRLRERHPRLRIEACSSGGGRVDLGALARTDQVWTSDNTDAVDRLSIQHGYGQLYAPETMVAWVTDSPNPLTGREV 554
                 7776.........4579********************************************************************************** PP

   Melibiase 300 slelraavallGslGleldlaklseeekqavkkqvakykkvrelvlkg 347
                 +le+r +va++G lG+  dla+ s+++ ++ +  v +yk +r++++ g
  KIR61352.1 555 PLEFRFHVAMSGVLGIGGDLATWSDADLATAAGLVGQYKSIRPVIQHG 602
                 *********************************************986 PP

>> Glyco_hydro_36N  Glycosyl hydrolase family 36 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.1   0.0     9e-46   2.7e-42       3     246 ..      33     256 ..      31     263 .. 0.87

  Alignments for each domain:
  == domain 1  score: 145.1 bits;  conditional E-value: 9e-46
                      EEEEEEEE--S-----...TTS--S...TTT.-TT--CCCS-BSS-BTTSS--S--SEEEE-TTS-----EEEEEEEEEES----TTS-----S CS
  Glyco_hydro_36N   3 lehlYwGkklsdteeredlsfaplsalakasrdrglsldtlpqeyptsgkgdyrepaleirradGsrstdfrytsheiyegkpelegLPatyae 96 
                      ++ l+wG+++   + + ++++ pl +  ++ +       + ++ +p  g  +++  al ir+adG+  +d+++t+h+     p           
       KIR61352.1  33 VRPLHWGEPI---TVA-AAAELPLWQPPYDMA--FEGPYDGSEDFPFDGGRRFGPRALGIRYADGTGGLDLTITGHHLG---P----------- 106
                      6779******...222.223333332223332..3334457899********************************994...5........... PP

                      GEEEEEEEEEETTTTEEEEEEEEEECCCTEEEEEEEEEE-SSS-.EEEEEEEEEEEEES.S--EEEEEEEEETTEEEEEEEEE--CEEEEEE-- CS
  Glyco_hydro_36N  97 eaetleitlkDevagleltlsytvfeesdvitrsarltnegeep.leleklasasldlp.dadyellsltGaWarErqiqrrplthGkqsiesr 188
                        +tl+++l+D++ +++++l+y+v +++dvi+r+  ++++g+++ lel+  a a + lp ++dy+l ++tG W+rE +++r+++   ++++ sr
       KIR61352.1 107 --DTLVVDLADRAGPVAVHLHYRVAADTDVIERWSAVRHTGTDQpLELTDHAAAVWCLPpRDDYRLSHVTGGWCREGRLHRTAVPVAETTLTSR 198
                      ..9************************************987655*************9999******************************** PP

                      SSSS-SSBESEEEEEETT--SSSB-EEEEEES-SSSEEEEEEE-TTS-EEEEEEE-ST CS
  Glyco_hydro_36N 189 rGrsshqanpflalgepgtteesGevygfslvYSGNfraqaerdqfgkvrvlmGinpl 246
                      rG +sh anp++++ + +t+ee+Gev++++l++SG++r+++ r+++g + +l+   ++
       KIR61352.1 199 RGMTSHSANPWVMIDDGTTEEENGEVFSAALAFSGSWRVTVLRTHDGPCSLLGAAGHD 256
                      ***********************************************99998876655 PP

>> Glyco_hydro_36C  Glycosyl hydrolase family 36 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.5   4.6e+03      16      35 ..     472     491 ..     470     492 .. 0.88
   2 !   27.7   0.0   9.8e-10   2.9e-06      13      77 .]     624     687 ..     615     687 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.5
                      EEEEESS--SS---EEE--- CS
  Glyco_hydro_36C  16 vfyfqvlarpnaalrrlklk 35 
                      ++++ vl r  ++++rl+++
       KIR61352.1 472 LGVYEVLDRLRERHPRLRIE 491
                      6899*************985 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 9.8e-10
                      EEEEEEEESS--SS---EEE---S--TTSEEEE.....EEEHHHHHHT-EEE--..SSSEEEEEEE CS
  Glyco_hydro_36C  13 eavvfyfqvlarpnaalrrlklkGLdpdkkYrveeegktysGdeLmnaGLnlpl.agdfqSrlyhl 77 
                       a vf+++v   p++ ++ l l+GLdp + Yr  ++g+++ G+ L + GL+++l ag + S l++l
       KIR61352.1 624 AAAVFVWRVPGGPAETIT-LPLPGLDPGAVYRD-ATGRQFHGAGLRSTGLPVTLaAGPMVSALVTL 687
                      589999999777777765.*************8.59******************779999998876 PP

>> Melibiase_2  Alpha galactosidase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   6.2e-08   0.00019      45      97 ..     333     388 ..     316     393 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 6.2e-08
                  HHT--EEE--SS-B-SS...--TTS---B-TTTSTTHHHHHHHHHHHTT-EEEEEE CS
  Melibiase_2  45 dlgyeyviiddcwlake...rdkegrlqadpkrfpsgikkladyvhskglklgiya 97 
                   lg e  ++dd w + +   r   g   ++p rfp+g++ lad+v s g+++g++ 
   KIR61352.1 333 RLGAELFVVDDGWFGARtndRAGLGDWFPNPARFPDGLRPLADHVRSLGMRFGLWV 388
                  5899999******875411144557789*************************975 PP

>> Glyco_hydro_31  Glycosyl hydrolases family 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.3e-06     0.007      59     186 ..     336     465 ..     315     595 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.3e-06
                     EEEEEESCGGSBTTC.......CTB-.TTTSS-H.HHHHHHHHHTT-EEEEEE-SEE.E.-TTSHHHHHHHHTTSBECCCCCSTCECTSSEEEEB CS
                     xxxxxxxxxxxxxxx.......xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31  59 ldvivlDidymdkrk.......dftwdkerFpdp.kemvdelhekgvklvvivdpaiskqeeeyeafdegkekgvflknkdgsykgkwpgstafp 145
                      + +v+D  ++ +r        d+  ++ rFpd  + + d++++ g+++ ++v+p +   +++++ ++     +++l+ ++   ++   +++ ++
      KIR61352.1 336 AELFVVDDGWFGARTndraglgDWFPNPARFPDGlRPLADHVRSLGMRFGLWVEPEMV--NPDSDLYRA--HPDWVLHLPTLPATEG--RNQLVL 424
                     56778888887744345666667777999***99899999**888**********764..445777777..7888888665553333..4899** PP

                     -TTSHHHHHHHHHHHHHHHCTCT--EEEE-STTTB.SCCCC CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 146 DftnpearewwkkelkkflldlgvdglwiDmnepsnfeegs 186
                     D+t+ ++rew  + l + + + ++ +l+ D n p +  +++
      KIR61352.1 425 DYTRADVREWALSWLDDLVRSCDLAFLKWDCNRPFTEARPQ 465
                     *********9887888777789********99986543333 PP

>> GHL10  Glycosyl hydrolase-like 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00012      0.37      70     159 ..     368     452 ..     361     464 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00012
       GHL10  70 DvLaevideahkrnlkvlaWFevglnakelselvkahPasltvqkrdevktsesaagerlwlnPliPevqdfitklvvevvkrYdvDgvq 159
                 D L  + d+ +  ++++  W e  + +++ s+l +ahP ++   +   + +      ++l+l+    +v+++  + + ++v+  d+  ++
  KIR61352.1 368 DGLRPLADHVRSLGMRFGLWVEPEMVNPD-SDLYRAHPDWVL--HLPTLPAT--EGRNQLVLDYTRADVREWALSWLDDLVRSCDLAFLK 452
                 556667788888899999***99988776.89********77..65555555..4689************************99986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4751.72
//
Query:       KIR61353.1  [L=338]
Description: hypothetical protein TK50_27175 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-46  157.1   0.0    4.3e-46  156.5   0.0    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    2.6e-13   49.8   0.0    3.6e-13   49.3   0.0    1.1  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
     0.0018   18.5   0.0     0.0031   17.7   0.0    1.4  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   0.0   7.1e-50   4.3e-46       2     178 .]     121     297 ..     120     297 .. 0.93

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 7.1e-50
                   HHHHHHHTTHHHHHHHHHTTCC..HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEE CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregew..ksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivs 96 
                   a++l ++++ ++a++ +r+++   ++e +l+ +  ++++vG++G+ r G++va +l+  +++v+ yd++ ++++ + elg++ ++l el+a sD+vs
    KIR61353.1 121 AAILLANKQATAAEQLYRQRRDriDREVELRDTGNYRRQVGLVGASRTGRRVAGLLALTDLDVLLYDPYLTDDQ-ATELGARRCDLAELMALSDVVS 216
                   56777888888888877666444488889999999**********************************99777.999******************* PP

                   E-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  97 lhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   lh+p t+et ++i+++ l++m++g  liNtaRG+++d++aLl+ L+ g+++ a+lDv+ +eplp+d++l++lp v+ltPHia
    KIR61353.1 217 LHVPSTAETAGMISRALLSLMRDGTTLINTARGTVLDQDALLDELRTGRLR-AVLDVTTPEPLPADHELWSLPGVTLTPHIA 297
                   ***************************************************.99***************************8 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0     6e-17   3.6e-13      12     128 ..      27     323 ..      16     328 .. 0.93

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 6e-17
                 HHHHHHTTE.EEEEESCSSHHHCHHHHTTESEEEE-TTS.-BSHHHHHHHTT--EEEES.SSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH..... CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
  2-Hacid_dh  12 lellkeegv.evevkdellteellekakdadalivrsnt.kvtaevlealpkLkviara.gvGvDnvDldaakerGilVtnvpgystesvAElt..... 102
                 + ll++ +v   +v ++l+++  +e +++a++li+     +vtaevl+++p+L+ i++  g  v+ +D ++a+ +Gi+V+n+ +++++ vAE++     
  KIR61353.1  27 RHLLRQ-HVdAATVLESLDDAPAHELLAEAEVLITGWGCpPVTAEVLDRAPRLRAIVHSgGSTVELIDPSLAATHGIAVSNAGEANAIPVAEYAfaail 124
                 566777.6656667778999999***********976655**************9987626789*********************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  KIR61353.1 125 lankqataaeqlyrqrrdridrevelrdtgnyrrqvglvgasrtgrrvagllaltdldvllydpyltddqatelgarrcdlaelmalsdvvslhvpsta 223
                 *************************************************************************************************** PP

                 ..........................................................................T-BHHHHHHHHHHHHHHHHHHHTTC CS
                 ..........................................................................xxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ..........................................................................aaTeeaqeniaeeaaenlvaflkge 127
                                                                                           +aT + +++++  +a++l +f +g 
  KIR61353.1 224 etagmisrallslmrdgttlintargtvldqdalldelrtgrlravldvttpeplpadhelwslpgvtltphiaGATGTELRRLGSYVADELARFRQGT 322
                 *********************************************************************************************999996 PP

                 C CS
                 x RF
  2-Hacid_dh 128 s 128
                 +
  KIR61353.1 323 P 323
                 5 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.2e-07    0.0031       1     106 [.     159     263 ..     159     272 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.2e-07
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-..SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S--- CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavyn..rtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstss 93 
                    ++g++G    G+  a  l+  + +v +y+  +t ++++el   ga+ + +++el+a  dvv + v++++++  +i++ ll+ ++ g++li+++   
     KIR61353.1 159 QVGLVGASRTGRRVAGLLALTDLDVLLYDpyLTDDQATEL---GARRC-DLAELMALSDVVSLHVPSTAETAGMISRaLLSLMRDGTTLINTARGT 250
                    68***************************44444444444...45444.567899999*******************9************998777 PP

                    HHHHHHHHHHHHH CS
  NAD_binding_2  94 pedtrelakelke 106
                    + d+  l +el+ 
     KIR61353.1 251 VLDQDALLDELRT 263
                    7777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2461.17
//
Query:       KIR61354.1  [L=1129]
Description: hypothetical protein TK50_27180 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-08   32.9   0.1    5.2e-08   32.9   0.1    3.5  3  He_PIG          Putative Ig domain
    5.9e-07   29.7   7.5    0.00095   19.3   0.2    3.9  4  F5_F8_type_C    F5/8 type C domain
     0.0051   16.8   0.1       0.12   12.4   0.0    3.1  3  BiPBP_C         Penicillin-Binding Protein C-terminus Family
  ------ inclusion threshold ------
       0.15   11.6   2.5       0.33   10.5   2.5    1.6  1  Alginate_lyase  Alginate lyase


Domain annotation for each model (and alignments):
>> He_PIG  Putative Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.1   1.2e-11   5.2e-08       1      47 [.     619     658 ..     618     660 .. 0.94
   2 ?   -0.2   0.0      0.26   1.2e+03      20      40 ..     896     915 ..     893     916 .. 0.79
   3 ?   -3.2   2.8       2.2     1e+04      27      44 ..     950     964 ..     925     979 .. 0.69

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.2e-11
      He_PIG   1 tytlttpgsngLPsGLtLdsstGtitGtpdqtvapGsytftVtatdg 47 
                 ty +      gLP+G  Ld++tG++t+tp     pG+y + V a dg
  KIR61354.1 619 TYRA-----YGLPKGAVLDPATGALTWTPARR--PGRYPVQVVADDG 658
                 6777.....8**********************..9**********98 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.26
      He_PIG  20 sstGtitGtpdqtvapGsytf 40 
                 +stG++ G ++ + ap ++ f
  KIR61354.1 896 ASTGALAGRISAG-APVTLKF 915
                 89*******9998.6666665 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.2
      He_PIG  27 GtpdqtvapGsytftVta 44 
                 G+++ +   G + ft+++
  KIR61354.1 950 GDVTGS---GILPFTIDY 964
                 456666...777777665 PP

>> F5_F8_type_C  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.1   4.9e+03      42      62 ..     569     590 ..     545     598 .. 0.77
   2 ?   -2.0   0.0      0.82   3.7e+03      60     114 ..     660     716 ..     646     724 .. 0.61
   3 !   19.3   0.2   2.1e-07   0.00095      36     114 ..     780     859 ..     752     877 .. 0.76
   4 !   12.3   0.3   3.1e-05      0.14      10     110 ..    1012    1111 ..    1002    1122 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.1
                   EEEEEEEEEEEEECSSTT.SSE CS
  F5_F8_type_C  42 gkpkkidgvvtqgrqdgg.nay 62 
                   g++ ++d+v+++g++d +  a+
    KIR61354.1 569 GTTVDLDKVILTGAKDLTqPAF 590
                   7889999*****9999866444 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.82
                   SSEEEEEEEEEESSSSSEEEEEEECEEESSS...SSSSEEEEEE.EEEEEEEEEEEEEE CS
  F5_F8_type_C  60 nayvksykiqvsddgetWttvkdekvpgnsd...nstpvtntfd.ppvkaryvrltpts 114
                   +  ++++++ vs d    + +k+    g+sd   +++p++ t d   ++ar v  t+t+
    KIR61354.1 660 SVTARTFEMVVSADRA--RMIKAAVADGTSDsavYTSPTKATYDaALATARSVAATGTD 716
                   6667777888888854..33443112444443356677777777666666777666665 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 2.1e-07
                   EEEEEEEEEEEEE..EEEEEECSSTTSSEEEEEEEEEESSSSSEEEEEEECEEESSSSSSSEEEEEEEEEEEEEEEEEEEE CS
  F5_F8_type_C  36 wlqvdLgkpkkid..gvvtqgrqdggnayvksykiqvsddgetWttvkdekvpgnsdnstpvtntfdppvkaryvrltpts 114
                    + +d+g+ ++++  ++++q r +  +++++   ++ sdd  tWt ++++++ +++d++t+ +++ ++    r+++l++ +
    KIR61354.1 780 AVVLDFGTRYRVTpeQFTFQARYNF-GNRMQGTNVYGSDDAVTWTLLSASATVETNDYQTVAVRDDQKGKAYRFLKLQVDQ 859
                   5789*********99*******999.9******************999966655555344444444455555999999887 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 3.1e-05
                    TTTGGGGGGSSSTTSSEEESSSSTT.EEEEEEE..EEEEEEEEEEEEECSSTT.SSEEEEEEEEEESSSSSEEEEEEECEEESSSSSSSEEEEEE CS
  F5_F8_type_C   10 gewpaaaaldGnkntaWsssssddk.qwlqvdL..gkpkkidgvvtqgrqdgg.nayvksykiqvsddgetWttvkdekvpgnsdnstpvtntfd 100 
                    +  +aa ++d ++ t +s+ ++ ++ + l+ dL  gk+ ++d+ ++  rqd++   +  +  ++ s+d +tWt + +   ++++   +++     
    KIR61354.1 1012 NATHAARLFD-SSVTTFSDVAPVNGaAALTWDLgaGKTITLDRADVLVRQDNNgLTRQVDQALEGSNDLSTWTRLTG---TTGKS-LSWQSLPAT 1101
                    3336667777.4555667444444448888888335555566*********98877888899******99****999...33333.244444444 PP

                    EEEEEEEEEE CS
  F5_F8_type_C  101 ppvkaryvrl 110 
                       + ry+r+
    KIR61354.1 1102 GHGQYRYLRI 1111
                    4445566666 PP

>> BiPBP_C  Penicillin-Binding Protein C-terminus Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.6e-05      0.12      35      86 ..     607     662 ..     586     666 .. 0.68
   2 ?   -3.3   0.0       2.1   9.5e+03      41      72 ..     815     848 ..     812     850 .. 0.69
   3 ?    0.0   0.0       0.2     9e+02      28      68 ..     904     945 ..     896     952 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.6e-05
     BiPBP_C  35 lqlkarggeaplrWlldgeplae..tkrgrelawqp..epGrhrLtvvDaaGrvdd 86 
                 + l+a    ++++ +  g p +     +  +l+w+p  +pGr+ ++vv ++G++++
  KIR61354.1 607 IDLSATDPGGSVTYRAYGLPKGAvlDPATGALTWTParRPGRYPVQVVADDGQSVT 662
                 555555555555555544443220045667899********************998 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.1
     BiPBP_C  41 ggeaplrWll..dgeplaetkrgrelawqp.epGr 72 
                 g+++ ++W l  + + + et++ +++a++  ++G+
  KIR61354.1 815 GSDDAVTWTLlsASATV-ETNDYQTVAVRDdQKGK 848
                 56667888775444555.89999999888888887 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.2
     BiPBP_C  28 dipkrqrlqlkarggea..plrWlldgeplaetkrgrelawqp 68 
                  i++  +++lk +g ea  ++   + g+p+ + ++++ l+w+ 
  KIR61354.1 904 RISAGAPVTLKFSGPEAisRVAVTIGGQPV-TPASEDGLTWTA 945
                 5667789999999998889999999****9.999999999986 PP

>> Alginate_lyase  Alginate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.5   7.3e-05      0.33      58     193 ..     105     244 ..      58     264 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.3e-05
                     HHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHCTTTCCCCCCCCCCCBTT..GGGGGGHHHHHHHHHC...TTCSSSHHHHHHHHHH.HHHHHH CS
  Alginate_lyase  58 wadavallalayyltgdkrYaekagellraWfldpktrmnpnleyaqaikggrgagiidtevldalall...eaakalpekerkaiek.Wfkkll 148
                     ++ a+ + al++  tg++ Y + a++++r W     +rm p + ya   +   ++g+  +++l a+++l   e+ ++ ++ ++++ +  W +  +
      KIR61354.1 105 DGVAALTQALMWVTTGNEVYRRNAIQVVRVW-----SRMDPTK-YAYFADAHIHTGLPLQQILTAAEILratEPVADDTPGTYNGYDVtWHESDA 193
                     45566899***********************.....5555544.443333333344444444444444444455555555555544433333333 PP

                     HHHHHCH.........HHCCCCTGCSHHHHHHHHHHHHHHHHTT-HHHHHHHHH CS
  Alginate_lyase 149 dwlqtsr.........kgkdekaaknNHgywaalqvaaialvlgdrdlldkalk 193
                     + l+t+           g d++    N   +   + +a+a++ +d + ++k+++
      KIR61354.1 194 QNLLTNFanpvltvfsPGNDRWM---NQHLFGLFGRIATAIFADDAAGYAKGVE 244
                     33333222333322246666666...8888888888888888888888877774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.50
# Mc/sec: 6845.77
//
Query:       KIR61355.1  [L=505]
Description: alpha-L-arabinofuranosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-42  145.9   0.0    1.8e-42  145.3   0.0    1.3  1  Alpha-L-AF_C    Alpha-L-arabinofuranosidase C-terminal domain
  ------ inclusion threshold ------
      0.047   13.6   0.0       0.22   11.4   0.0    2.0  2  Glyco_hydro_44  Glycoside hydrolase family 44


Domain annotation for each model (and alignments):
>> Alpha-L-AF_C  Alpha-L-arabinofuranosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   0.0   2.1e-46   1.8e-42       1     168 []     291     497 ..     291     497 .. 0.95

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 2.1e-46
                   EEEEE--S-...S..............SS------HHHHHHHHHHHHHHHHHTTT--EEEES-SBSTT-.....SEEEETTE.EEE-HHHHHHHHHH CS
                   xxxxxxxxx...x..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Alpha-L-AF_C   1 gEyavwyds...p..............glleqqntledAlaeAafltglernaDvVkmasyAplvnviaatqWspdliwdngkvvgtpsYyvqklfs 80 
                   +E++vwy++                  +  e+++++ dA++++ +l++l+r++D+V++a+ A+lvnvia     p++++++g +++++++++++++s
    KIR61355.1 291 DEWNVWYQTdfgAarraedrtgwpiapRVIEDRYNVTDAVVVGGLLISLLRHSDRVTVACQAQLVNVIA-----PIMTEPGGPAWRQTIFHPFAITS 382
                   9******99766156778889999999******************************************.....*********************** PP

                   HS--SEEEEEEEE--EEEEEEEET.........................SS--EEEEEEETT-..-SEEEEEEEEE-.STT----SSSTTSSEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxxxx.xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  Alpha-L-AF_C  81 knaggtvlpvelespkyeikgege.........................aeeavevevdlegl.ekaskaevtvlsg.dlkaeNtfenpekvvpkee 150
                   + a+g+vl+ve+++p+ye++++ge                          +e+++++v l+g+  + ++ae ++l++ d++a+Nt ++p++vvp+++
    KIR61355.1 383 RLAKGEVLRVEIDAPTYETTRYGEaslvdavathdpedgelvffavnrsRSESADLRVPLTGFaPGLRVAESWTLADdDPAAVNTADQPDRVVPRPT 479
                   ***********************99************************8889**********8888999*****777******************* PP

                   EE.EE-E..EEEEE-TTE CS
                   xxxxxxxxxxxxxxxxxx RF
  Alpha-L-AF_C 151 klakvsggkftytlpayS 168
                     ++v++g + + lp+ S
    KIR61355.1 480 AQVSVTDGVLHAVLPPVS 497
                   **9***989*******98 PP

>> Glyco_hydro_44  Glycoside hydrolase family 44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.4e-05      0.22      97     191 ..     137     228 ..     102     280 .. 0.74
   2 ?   -0.2   0.0     0.086   7.7e+02     146     178 ..     246     278 ..     238     313 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.4e-05
                     SSEEEHHH.....HHHHHHHHH--TSTTS--EEEESS-GGG.HHHH-TTT--S---HHHHHHHHHHHHHHHHHH-TT-E..EEEEEE-SHHHH.. CS
  Glyco_hydro_44  97 dtsvyadeeftkewvnhlvkklgsasatgvkfysLDNEpel.WssTHrdvhpekvtydellertidlAkavkaadpdae..vlGpaswgwtay.. 186
                     d ++y ++   ++ ++ l +  gs +  gv ++ L NE++  W++ H+  h              ++A+a ++a pd e  v G ++ g+ ++  
      KIR61355.1 137 DVQEYLNQ-PDRTRLAELRAANGSPNPYGVTMFCLGNEMDGpWQTGHKTAHE-------YGRLAAETAQAMRDAEPDLElvVCGSSDSGMPTFaa 223
                     44445444.445667889999999999************9769999997665.......566677889999999998763356888888866655 PP

                     TTT-. CS
  Glyco_hydro_44 187 fqsaa 191
                     ++s++
      KIR61355.1 224 WESEV 228
                     55554 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.086
                     --S---HHHHHHHHHHHHHHHHHH-TT-EEEEE CS
  Glyco_hydro_44 146 hpekvtydellertidlAkavkaadpdaevlGp 178
                     +p+kv++d +l   +d+ + v ++ ++a  +G 
      KIR61355.1 246 DPAKVDADSFLASAVDMDRFVDKVVATADSVGA 278
                     555555555555555555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3417.87
//
Query:       KIR61356.1  [L=217]
Description: hypothetical protein TK50_27190 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.075   12.9   0.5      0.075   12.9   0.5    2.5  4  DUF2721   Protein of unknown function (DUF2721)
       0.18   11.3   0.5       0.49    9.9   0.5    1.7  1  SieB      Super-infection exclusion protein B
        6.2    5.6   7.5       0.97    8.3   2.2    1.9  2  DUF3533   Protein of unknown function (DUF3533)


Domain annotation for each model (and alignments):
>> DUF2721  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.5   1.3e-05     0.075      93     127 ..      14      48 ..      11      50 .. 0.91
   2 ?   -1.2   1.5       0.3   1.8e+03      96     110 ..     128     139 ..     102     155 .. 0.49
   3 ?   -1.3   0.6      0.31   1.9e+03      70      83 ..     131     144 ..     121     167 .. 0.56
   4 ?   -1.4   0.1      0.34   2.1e+03      54      76 ..     168     190 ..     149     212 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
     DUF2721  93 dlsllaailfvlalllllvslllflrEirlslral 127
                 ++++++ ++fv++l +l++ l +f++E+ + ++a 
  KIR61356.1  14 QTAIAVWYVFVISLCFLVACLPYFVFETVVGWQAS 48 
                 678999************************99985 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.3
     DUF2721  96 llaailfvlalllll 110
                  + ++++v+a    +
  KIR61356.1 128 AATVAVAVAAT---I 139
                 22222222222...1 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.31
     DUF2721  70 lvlsallvvlvvll 83 
                 ++++++++++ +++
  KIR61356.1 131 VAVAVAATIVGIVV 144
                 22222222222222 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.34
     DUF2721  54 knlrrRarlirrailllvlsall 76 
                 + l rR  +  + illlv+++++
  KIR61356.1 168 RALGRRPLVPMAWILLLVVAIAA 190
                 55555555555555666655554 PP

>> SieB  Super-infection exclusion protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.5   8.2e-05      0.49      28      58 ..      12      42 ..       9      48 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 8.2e-05
        SieB 28 leeyglwiglvflisiayllaqvvskllaei 58
                ++++++ +++vf+is+++l+a + +++++++
  KIR61356.1 12 VAQTAIAVWYVFVISLCFLVACLPYFVFETV 42
                6788999**************9999998765 PP

>> DUF3533  Protein of unknown function (DUF3533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.2   0.00016      0.97     242     286 ..      12      56 ..       3      62 .. 0.90
   2 ?   -0.2   0.3      0.06   3.6e+02     298     328 ..     165     195 ..     159     197 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00016
     DUF3533 242 vyrllisvvslfvlSlffslvslafqvdftvafGragFvvyWmit 286
                 v +++i+v ++fv+Sl+f ++ l + v  tv + +a+ v +W+ t
  KIR61356.1  12 VAQTAIAVWYVFVISLCFLVACLPYFVFETVVGWQASHVALWLGT 56 
                 56899*******************9999999999********865 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.06
     DUF3533 298 envasilgppylpvwllfwvilNvsstfvPl 328
                  ++ ++   p++p++ +++ +++++ + +Pl
  KIR61356.1 165 AVLRALGRRPLVPMAWILLLVVAIAASRTPL 195
                 4444444789999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1686.60
//
Query:       KIR61357.1  [L=286]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-14   54.1  14.4    1.6e-14   54.1  14.4    1.8  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1  14.4   8.7e-19   1.6e-14      10     176 ..      86     276 ..      75     284 .. 0.81

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 8.7e-19
  BPD_transp_1  10 lnrnkkldkllrpliivllslPsfvlaillvlvf.....................vilsilghlilpviillllsaapyvrlirraalrslpkdlve 85 
                   l r + ++ l+r+l+++++ +  f+ a ++ +++                      ++++ g  i+ ++++l +++++ ++li+ a l+s+p+dlve
    KIR61357.1  86 LDRLRHWQGLFRTLVYLPSLMSGFIAATIWKYILnynfgvvnttlrehgmetwakDWFGDSGLVIWVLLFVLCFTLGGNTTLIYLANLQSVPRDLVE 182
                   55667778899999999999999999999999999999*****************9***************************************** PP

  BPD_transp_1  86 aaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG..lgtllleailgydyseis.nggvlalviavlllnlvadilq 176
                   aar++Gas  q+fr+v+ P+++ ++   + l +++ ++ +  ++ l+++++  ++ ++  +i    + e     g++a+v+++l++++ +   +
    KIR61357.1 183 AARIDGASGLQVFRYVTWPMLAGSVTVNMTLGIIAGWTIFDQILVLTAGGPgfVSETMAFFIYKVGFGEYRaGYGSAAAVLLFLVVMATTVGAN 276
                   ****************************************999988866555633333333333333333355566666666666665555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2102.12
//
Query:       KIR61358.1  [L=447]
Description: hypothetical protein TK50_27205 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-12   47.2  15.1    3.9e-12   46.7  15.1    1.2  1  SBP_bac_1  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7  15.1   2.2e-16   3.9e-12       9     313 ..      57     356 ..      51     358 .. 0.79

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 2.2e-16
                 HHHHHHHHH....HHHHHTTEEEEEEEE.CHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHH CS
   SBP_bac_1   9 alqalvaka....fekehpgikVeiesv.gsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkil 102
                 +++ +v ka    f+++ +   V++++   + ++a++l++  ++G+ p  +i +  ++++++++ag l+pl + v + l ++      + + + +p+  
  KIR61358.1  57 TWNGAV-KAvsdaFNAKSTTAVVQLDPLpAGTDYATALKTLDSTGRWP-AIIEM--RDTKTYVEAGKLAPLPSEVTDLLDDKAVAKSEDGNVYITPSGA 151
                 566666.55566698888888888888877778999888888888877.88888..88899*****************999999999999999999887 PP

                 CEEEESEEEE.E.EEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT......HHCSHHH CS
   SBP_bac_1 103 dskvlyvPly.a.argliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgg......gldnpeg 193
                          + +    ++Y+kd+f++  l++p+t+ e+++++k +k++g +p       + +    +   +l+k l++++f k+        ++ ++++
  KIR61358.1 152 L--------NgEiGLNIVYDKDYFAQHNLKVPTTYTEFIDLLKAIKANGDTP------LATAAGDIWPSDQLWKPLAAPYFAKWSDkggfwnAVQDGTA 236
                 7........4445566689*********************************......66666666666666666666666666666555885555555 PP

                 HS..HHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE.....EE CS
   SBP_bac_1 194 vt..aatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi.....lg 285
                 +     + l+ l+++ n   ++  kg +++ +a+  +l+ + +a ma ++ +          ++  ++ k +pk++ g +++P   g+ + +      +
  KIR61358.1 237 SLedLREPLTRLQDITN---NYVLKGWQSTADAQTSTLLVNHQAVMATSSAGI---------GRLNDIHKVDPKFKAGLFIIPDDAGNIDVLknavnGD 323
                 55556666666666666...777777777777777778888888887666666.........*******************99988888888***8888 PP

                 EEE.EEEBTTCSTHHH....HHHHHHHHTSHHH CS
   SBP_bac_1 286 ayg.laipkgsknpea....AkkFldfllspea 313
                 + + lai++++k+  a    A +Fl+f++s e+
  KIR61358.1 324 TAPgLAISSQAKQNGAeydaAVDFLTFFYSVEG 356
                 88889999999997778888*********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2804.90
//
Query:       KIR61359.1  [L=324]
Description: hypothetical protein TK50_27210 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.6e-33  114.0   1.8    2.2e-31  109.4   0.2    2.3  2  Peripla_BP_3  Periplasmic binding protein-like domain
    2.1e-18   66.7   0.0    2.9e-18   66.3   0.0    1.2  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    1.9e-07   30.8   0.0    3.4e-07   29.9   0.0    1.5  1  LacI          Bacterial regulatory proteins, lacI family
      6e-05   22.7   0.0    0.00035   20.2   0.0    2.1  2  Peripla_BP_4  Periplasmic binding protein domain
     0.0073   14.9   1.4     0.0098   14.5   1.4    1.2  1  MutL          MutL protein


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.017        61       2      81 ..      40     110 ..      39     158 .. 0.66
   2 !  109.4   0.2   6.1e-35   2.2e-31       1     166 []     166     323 ..     166     323 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.017
                   .HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHH.TTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEES CS
  Peripla_BP_3   2 ehLvelGhrriafiggegdrgasasderergfrqal.eelglplnetvvaaddpaaaaaaraalllqalklaalPtAviaa 81 
                   + +  lG r++af++   +   s+  ++ +g+++++ +e +l l  t + +d++ + + ++  l  +++    +P Av+ a
    KIR61359.1  40 QAMMGLGRRTVAFVA--AHMIGSTFADMAAGAESVAtAEGNLFLLST-TGEDPARERDLMET-L--REY----RPAAVLLA 110
                   678899999*****9..666667888999999999944444444444.44444433333333.3..222....56555544 PP

  == domain 2  score: 109.4 bits;  conditional E-value: 6.1e-35
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHHHHCC...-SEEEEESSCCHHHHHHHHH CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraal.llqalklaa...lPtAviaasDelAlgvlqal 93 
                   vehLv  Ghrriaf+g     + ++  er+rg++  l+++glp+++ +v +   ++++a  aal ll      +   +PtA+++ +D +A+gv++a+
    KIR61359.1 166 VEHLVTGGHRRIAFLG--LIPERTTPAERLRGYELGLQDAGLPVDPSLVIECANDSDGARVAALsLL------SrpdRPTALVCLTDGVAVGVYRAA 254
                   79**************..555568999*************************999999999999322......22359******************* PP

                   CCTT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  94 reaglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   r  gl++P d++++gfdd ++ a ++P+lTt+r+p+ e+G   a+  l l    ++   +v+lp+el++ReS+
    KIR61359.1 255 RSLGLAIPGDVAIVGFDDAPIVADLTPALTTIRVPFWEVGVHGARVALGL----EEYDGHVQLPTELIVRESS 323
                   ***********************************************988....4555667789*******96 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   8.2e-22   2.9e-18       6     222 ..      52     271 ..      47     298 .. 0.85

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 8.2e-22
                   EEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH..HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHH.T-EEEEESS--B-T....... CS
  Peripla_BP_1   6 lvlpqldePffldlvkgitkaakehgvdvlllaageeedla..kaidllkakgidgliiatsdtsfdditakaes.gipvialedaidap....... 92 
                   +v +    + f+d+ +g++  a + g +++ll + +e+ +     ++ l++ ++ ++++a+s++ +++  + a + ++   a++   +         
    KIR61359.1  52 FVAAHMIGSTFADMAAGAESVATAEG-NLFLLSTTGEDPARerDLMETLREYRPAAVLLAGSTQTGEEFEQRAVAyAEALAAVGARLVLVghpacpg 147
                   555555567799*****999888766.888888887777776889***************9999999998877776777777777766656678887 PP

                   .TTS-EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE- CS
  Peripla_BP_1  93 .dgvPcvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..Peidaiva 186
                    + + +v  d+     ++ ++L+  gh+r ia l++     t +er  G++  l++aGl+v    v ++ nd  +a+ a+ +ll+++  P+  a+v+
    KIR61359.1 148 sKSILSVDYDQVGGVRRAVEHLVTGGHRR-IAFLGLIPERTTPAERLRGYELGLQDAGLPVDPSLVIECANDSDGARVAALSLLSRPdrPT--ALVC 241
                   7555556677777778*************.*************************************************************..**** PP

                   SSHHHHHHHHHHHHHTT.--GGGEEEEEESSGGGHH CS
  Peripla_BP_1 187 indeaalGavlalkkeGrlkikeevdsfiesvvvyd 222
                     d +a+G ++a++  G l i+++v     + v++d
    KIR61359.1 242 LTDGVAVGVYRAARSLG-LAIPGDV-----AIVGFD 271
                   *****************.*******.....555555 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   9.5e-11   3.4e-07      12      46 .]       2      36 ..       1      36 [. 0.97

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 9.5e-11
                -HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI 12 SkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                S +T+Srv  ++++V+ +tr+rV+aa++ l+Y+ n
  KIR61359.1  2 SLTTASRVFADHPSVRPATRDRVLAAADDLGYVVN 36
                89******************************977 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       2.3   8.1e+03     187     204 ..      24      40 ..      12      46 .. 0.57
   2 !   20.2   0.0   9.8e-08   0.00035       9     222 ..      59     276 ..      50     282 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.3
                   EEESSCCHHHCHHHHHHH CS
  Peripla_BP_4 187 ilaandgmaegalealea 204
                   +laa d+ ++ +++al++
    KIR61359.1  24 VLAAADDLGY-VVNALAQ 40 
                   3444444444.4444444 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 9.8e-08
                   STCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSH......HHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEE CS
  Peripla_BP_4   9 snpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvds......talapalkkakaaGIpVvafdsddapsgerlay 99 
                   +++f + +  g+e+ a ++g+   + + ++ d a++ + +e++ +  + ++++a          + + +  ++++a G   v +  ++ p+++ +  
    KIR61359.1  59 GSTFAD-MAAGAESVATAEGNLFLL-STTGEDPARERDLMETLREYRPAAVLLAGSTQtgeefeQRAVAYAEALAAVGARLVLVGHPACPGSKSILS 153
                   445666.999999999999997776.68888999999999999999999999876665454454444456666777788888888887777777777 PP

                   EEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH.....-TTCEECCEEESTTTCHHHHHHHHHHHHH.TTTECEEEES CS
  Peripla_BP_4 100 vgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke.....ypgikivaevaganwdaekaqqaleallt.anpldgilaa 190
                   v  d+    + + e l+         ++ l   p  +  +er+ g +  l++     +p++ i        +d + a+ a+ +ll+ ++   + ++ 
    KIR61359.1 154 VDYDQVGGVRRAVEHLVTGGH---RRIAFLGLIPERTTPAERLRGYELGLQDaglpvDPSLVIEC-----ANDSDGARVAALSLLSrPDRPTALVCL 242
                   777777777777788877766...5688888899999999************7755555555555.....8999************888468999** PP

                   SCCHHHCHHHHHHHTTT..TSTEEEEEES-HHHH CS
  Peripla_BP_4 191 ndgmaegalealeaagl..agkvvvtgqDatpea 222
                    dg a g+ +a ++ gl   g+v+++g+D  p  
    KIR61359.1 243 TDGVAVGVYRAARSLGLaiPGDVAIVGFDDAPIV 276
                   *****************9999*99*****88765 PP

>> MutL  MutL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   1.4   2.7e-06    0.0098      86     152 ..      66     137 ..      26     145 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.7e-06
        MutL  86 aeaarraAlgAgakvlkvlageltre...dleelrelrpdiiLLaGGtDgGnk..evllenAellaeaklkl 152
                 a+ a+ +A + g   l +++ge+ ++    +e+lre rp  +LLaG t  G++  + ++  Ae la+++ +l
  KIR61359.1  66 AAGAESVATAEGNLFLLSTTGEDPARerdLMETLREYRPAAVLLAGSTQTGEEfeQRAVAYAEALAAVGARL 137
                 34567777777777778888887766676799*******************964378899999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2266.60
//
Query:       KIR61360.1  [L=362]
Description: transposase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-21   74.9   0.1    8.4e-21   74.2   0.1    1.3  1  DDE_3           DDE superfamily endonuclease
    1.6e-11   44.6  11.0    2.2e-11   44.2   1.3    3.6  3  HTH_32          Homeodomain-like domain
    1.8e-10   40.7   7.4    1.7e-09   37.6   0.3    4.0  4  HTH_29          Winged helix-turn helix
    1.2e-07   31.7   2.1    2.8e-05   24.2   0.1    3.2  3  HTH_28          Helix-turn-helix domain
    1.3e-07   31.2   4.6    1.5e-05   24.6   0.2    3.5  4  HTH_23          Homeodomain-like domain
    3.8e-06   27.3   2.1    2.4e-05   24.8   0.5    2.6  2  LZ_Tnp_IS481    leucine-zipper of insertion element IS481
    9.9e-05   21.9   0.0     0.0032   17.1   0.0    2.6  2  HTH_50          Helix-turn-helix domain
    0.00077   19.2   0.1       0.04   13.7   0.1    3.0  2  HTH_AsnC-type   AsnC-type helix-turn-helix domain
     0.0018   18.5   0.2        1.1    9.7   0.0    2.5  2  HTH_Tnp_1       Transposase
     0.0041   16.8   0.5        2.9    7.7   0.1    3.2  3  HTH_38          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.029   14.3   0.0       0.18   11.8   0.0    2.1  2  HTH_6           Helix-turn-helix domain, rpiR family
      0.079   12.8   0.1        6.4    6.7   0.0    2.8  3  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
      0.079   13.0   0.0        5.7    7.1   0.0    2.5  2  HTH_3           Helix-turn-helix
      0.092   13.2   0.0       0.59   10.6   0.0    2.1  2  HTH_26          Cro/C1-type HTH DNA-binding domain
      0.095   13.0   0.1         16    5.9   0.0    2.8  2  KORA            TrfB plasmid transcriptional repressor
        0.1   12.4   0.1       0.33   10.8   0.1    1.9  2  rve_3           Integrase core domain
       0.22   11.0   3.6        6.4    6.3   0.2    3.1  2  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
       0.35   11.2   6.1         13    6.2   0.2    3.7  3  HTH_31          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.1   8.5e-24   8.4e-21       2     145 ..     174     319 ..     173     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 8.5e-24
       DDE_3   2 vvfiDE.sgfqlgt.vrrrawakkGkrer.leeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslr 97 
                 ++++DE s++q+ + +r+  ++ +   +r    y r+g  +l++a+d++ g+++ +   + + ++f +fl+ +  + + +  ++l+lDn  +Hk  ++ 
  KIR61360.1 174 MLCVDEkSQMQALErTRPMLPMMPTVAARqTHDYVRHGVASLFAAFDPAAGKVIGQLHRRHRHQEFLKFLKVIDANTPAEMDLHLVLDNYATHKTPAVH 272
                 689***9999999999***********999********************************************************************* PP

       DDE_3  98 elveeeadrlellylPpySPelNpiEivwsklkrellkrrsfksldeL 145
                 +++++   r++l+++P+ +++lN +E+++  l ++ l+r+s++sl +L
  KIR61360.1 273 RWLAA-HPRFHLHFTPTSASWLNLVERWFAELTHRKLRRSSHRSLADL 319
                 *****.9*************************9999998999998887 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.095        94      24      44 ..       3      26 ..       1      50 [. 0.79
   2 !   44.2   1.3   2.2e-14   2.2e-11       2      73 .]      62     133 ..      61     133 .. 0.84
   3 ?    1.6   0.2      0.43   4.3e+02      16      48 ..     302     342 ..     288     360 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.095
      HTH_32 24 grpr...klsdevrariiallree 44
                grpr    l+d++ra + +++r+ 
  KIR61360.1  3 GRPRgvvELTDDERACLTRWARRG 26
                89987767************9543 PP

  == domain 2  score: 44.2 bits;  conditional E-value: 2.2e-14
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevr.ariiallreep.....rWsprqlaarlaeregvkvShstvyriL 73 
                 v +w+ R+ ++ legL d+pr+g+pr++sd+ + + i+++l+++p     +Ws+r +a++        +S+  v ri+
  KIR61360.1  62 VGKWRGRFLARRLEGLVDEPRPGAPRRISDDRVdEVIVKTLERQPanqdsHWSTRSMARET------GLSQTAVSRIW 133
                 89************************86665550555666666789*************77......69999999997 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.43
      HTH_32  16 gLkdr..prrgrpr..klsdevrariiallreep...rW..s 48 
                  L +r  +r+ +++   l  +v+ +i a+  ++p   +W  +
  KIR61360.1 302 ELTHRklRRSSHRSlaDLETDVQTWIEAWN-TDPrpfAWtrT 342
                 455552223334444459999999999999.66656877334 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.3   1.7e-12   1.7e-09       3      59 ..      37      91 ..      35      94 .. 0.94
   2 ?    4.5   0.1     0.037        37      12      35 ..     113     135 ..     108     137 .. 0.83
   3 ?   -2.8   0.1       6.6   6.5e+03       4      21 ..     172     188 ..     171     190 .. 0.61
   4 ?   -0.9   0.0       1.8   1.7e+03      29      39 ..     323     333 ..     320     333 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1.7e-12
      HTH_29  3 qallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprnrlse 59
                +++ll+aeG+     +A++lg+sr+ v +w+ rf + +l++l d +r+g+pr+ +s+
  KIR61360.1 37 KIVLLCAEGLV-NTHVAQRLGVSRDMVGKWRGRFLARRLEGLVDEPRPGAPRR-ISD 91
                89********9.****************************************6.775 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.037
      HTH_29  12 vstvsqiAkllglsrrtvyrwlkr 35 
                 + +++ +A+ +gls + v r+ ++
  KIR61360.1 113 W-STRSMARETGLSQTAVSRIWRA 135
                 4.599*************998665 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 6.6
      HTH_29   4 allllaeGvstvsqiAkl 21 
                 a +l+ ++ s  +q+ ++
  KIR61360.1 172 AMMLCVDEKS-QMQALER 188
                 5566666665.7777665 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.8
      HTH_29  29 vyrwlkrfeeg 39 
                 v++w+++++++
  KIR61360.1 323 VQTWIEAWNTD 333
                 89******985 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   2.8e-08   2.8e-05       4      51 ..      37      86 ..      34      87 .. 0.85
   2 ?    5.9   0.0     0.014        14      13      36 ..     112     136 ..     105     144 .. 0.86
   3 ?   -2.4   0.0       5.4   5.4e+03      29      38 ..     323     332 ..     323     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.8e-08
      HTH_28  4 eiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvp..rrrrp 51
                +i++l a+G   + +A++lg+sr++v +W+ r+ +  ++gLv+  r+++p
  KIR61360.1 37 KIVLLCAEGLVNTHVAQRLGVSRDMVGKWRGRFLARRLEGLVDepRPGAP 86
                677777777777899****************************5555666 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.014
      HTH_28  13 h.svreaArelgisrrtvyrWikry 36 
                 h s r  Are g+s++ v+r  +++
  KIR61360.1 112 HwSTRSMARETGLSQTAVSRIWRAF 136
                 3488999*************99987 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 5.4
      HTH_28  29 vyrWikryee 38 
                 v+ Wi ++++
  KIR61360.1 323 VQTWIEAWNT 332
                 789*****97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.8   3.7e+03       4      21 ..      13      30 ..      11      33 .. 0.72
   2 !   24.6   0.2   1.5e-08   1.5e-05       5      49 ..      33      77 ..      29      78 .. 0.92
   3 !    6.7   0.0    0.0063       6.3      17      48 ..     112     140 ..      98     142 .. 0.86
   4 ?   -2.6   0.0       5.3   5.2e+03      34      42 ..     323     331 ..     323     333 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.8
      HTH_23  4 ereRlrillllaeGlsvr 21
                 +eR++  + +++G+s +
  KIR61360.1 13 DDERACLTRWARRGKSSQ 30
                678888888888888765 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 1.5e-08
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegl 49
                  R +i+ll+aeGl  + +A++Lgvsr  v +w+ r+ +  legl
  KIR61360.1 33 ALRSKIVLLCAEGLVNTHVAQRLGVSRDMVGKWRGRFLARRLEGL 77
                57889********************************88999998 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0063
      HTH_23  17 GlsvreIAreLgvsrrTvyrwlkryreeGleg 48 
                  +s+r  Are g s+  v+r+   +r+ Gle+
  KIR61360.1 112 HWSTRSMARETGLSQTAVSRI---WRAFGLEP 140
                 6999999**************...98899987 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 5.3
      HTH_23  34 vyrwlkryr 42 
                 v+ w+++++
  KIR61360.1 323 VQTWIEAWN 331
                 789****97 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.5   2.4e-08   2.4e-05      29      80 ..      49      98 ..      16     105 .. 0.89
   2 ?    1.1   0.0       0.6     6e+02      24      44 ..     111     131 ..     107     145 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2.4e-08
  LZ_Tnp_IS481 29 aqvarelGvslrtaykwlarfraeGldGlldrssrPrrvPkataPerveavl 80
                  ++va+ lGvs+    kw  rf a  l+Gl+d   rP  +P++ + +rv++v+
    KIR61360.1 49 THVAQRLGVSRDMVGKWRGRFLARRLEGLVDE-PRPG-APRRISDDRVDEVI 98
                  79*****************************6.5774.79***999998876 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.6
  LZ_Tnp_IS481  24 drrtvaqvarelGvslrtayk 44 
                    +++ + +are G+s+ +  +
    KIR61360.1 111 SHWSTRSMARETGLSQTAVSR 131
                   57999**********877655 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0       0.2   1.9e+02      29      37 ..      51      59 ..      50      62 .. 0.88
   2 !   17.1   0.0   3.2e-06    0.0032      22      49 ..     111     138 ..      98     139 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.2
      HTH_50 29 lAkrLGvSh 37
                +A+rLGvS 
  KIR61360.1 51 VAQRLGVSR 59
                8******95 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 3.2e-06
      HTH_50  22 kYpStRklAkrLGvShtaianklrkYgI 49 
                 ++ StR +A+  G+S+ta+ +  r +g+
  KIR61360.1 111 SHWSTRSMARETGLSQTAVSRIWRAFGL 138
                 689****************999998886 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.19   1.9e+02      21      33 ..      49      61 ..      47      64 .. 0.82
   2 !   13.7   0.1   4.1e-05      0.04       2      36 ..      92     131 ..      92     135 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.19
  HTH_AsnC-type 21 aeLAervGlSest 33
                   + +A+r+G+S++ 
     KIR61360.1 49 THVAQRLGVSRDM 61
                   679*******975 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 4.1e-05
  HTH_AsnC-type   2 DeiDrkILeaLqed.....aRisyaeLAervGlSestvlr 36 
                    D++D  I++ L+++     +  s + +A+++GlS+++v r
     KIR61360.1  92 DRVDEVIVKTLERQpanqdSHWSTRSMARETGLSQTAVSR 131
                    8899999999999988888999****************87 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0011       1.1      16      50 ..      39      72 ..      24      96 .. 0.81
   2 ?    6.5   0.0      0.01        10      14      54 ..     117     156 ..     111     188 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0011
   HTH_Tnp_1 16 VreslepgksvsevArrhgvspnqLykWrrqyreg 50
                V +   +g    +vA+r+gvs+    kWr  + + 
  KIR61360.1 39 VLLC-AEGLVNTHVAQRLGVSRDMVGKWRGRFLAR 72
                5555.67888889****************998843 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.01
   HTH_Tnp_1  14 riVreslepgksvsevArrhgvspnqLykWrrqyregeeas 54 
                 ++ re+  +++ vs++ r  g+ p+   +W+  + + + ++
  KIR61360.1 117 SMARETGLSQTAVSRIWRAFGLEPHLVDTWKLSA-DPMFVE 156
                 57788888999*******************9777.555555 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0029       2.9       5      27 ..      11      33 ..      10      35 .. 0.91
   2 ?    5.9   0.0      0.01        10       9      34 ..      34      59 ..      31      61 .. 0.90
   3 ?    0.2   0.1      0.64   6.4e+02      21      39 ..     113     131 ..     110     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0029
      HTH_38  5 LsleeReeIerllaeGlslreIA 27
                L+ +eR ++ r+  +G+s  + A
  KIR61360.1 11 LTDDERACLTRWARRGKSSQALA 33
                9*****************98888 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.01
      HTH_38  9 eReeIerllaeGlslreIArrLgrsp 34
                 R +I  l aeGl +  +A+rLg+s+
  KIR61360.1 34 LRSKIVLLCAEGLVNTHVAQRLGVSR 59
                6889999*****************97 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.64
      HTH_38  21 lslreIArrLgrspsTIsR 39 
                 +s r +Ar+ g s + +sR
  KIR61360.1 113 WSTRSMARETGLSQTAVSR 131
                 5778899999999999998 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.6   1.6e+03      39      52 ..      50      63 ..      46      66 .. 0.84
   2 ?   11.8   0.0   0.00018      0.18      19      60 ..      96     138 ..      91     140 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.6
                HHHHHTT--HHHHH CS
       HTH_6 39 alAkaaavSeativ 52
                ++A+ ++vS+ ++ 
  KIR61360.1 50 HVAQRLGVSRDMVG 63
                6899999*999986 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00018
                 HHHHHHHHH-S.---TT--HHHHHHHTT--HHHHHHHH---S- CS
       HTH_6  19 kkiaeyilasp.dkaielsikalAkaaavSeativrfakkLGf 60 
                 + i++++ ++p ++ ++ s + +A + + S+ ++ r+ + +G+
  KIR61360.1  96 EVIVKTLERQPaNQDSHWSTRSMARETGLSQTAVSRIWRAFGL 138
                 56888888776256799**********************9997 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0064       6.4      12      29 ..      49      66 ..      47      74 .. 0.86
   2 ?    2.8   0.0      0.11     1e+02      11      28 ..     115     132 ..     111     149 .. 0.87
   3 ?   -2.8   0.0       6.2   6.2e+03      22      30 ..     268     276 ..     267     280 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0064
  YdaS_antitoxin 12 kaLAealgvsqqaVsqWl 29
                    +++A++lgvs+  V +W 
      KIR61360.1 49 THVAQRLGVSRDMVGKWR 66
                    689**************5 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.11
  YdaS_antitoxin  11 qkaLAealgvsqqaVsqW 28 
                      + +A++ g sq aVs+ 
      KIR61360.1 115 TRSMARETGLSQTAVSRI 132
                     5789***********985 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 6.2
  YdaS_antitoxin  22 qqaVsqWlk 30 
                      +aV++Wl+
      KIR61360.1 268 TPAVHRWLA 276
                     589****96 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.098        98      15      29 ..      51      65 ..      43      66 .. 0.93
   2 ?    7.1   0.0    0.0057       5.7      13      29 ..     116     132 ..     109     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.098
                HHHHHTSSHHHHHHH CS
       HTH_3 15 LAeklGvsrstisri 29
                +A++lGvsr  + ++
  KIR61360.1 51 VAQRLGVSRDMVGKW 65
                79********99998 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0057
                 HHHHHHHTSSHHHHHHH CS
       HTH_3  13 eeLAeklGvsrstisri 29 
                 + +A+++G+s++++sri
  KIR61360.1 116 RSMARETGLSQTAVSRI 132
                 568*************8 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.5   2.5e+03      13      31 ..      48      66 ..      39      72 .. 0.78
   2 ?   10.6   0.0   0.00059      0.59       8      32 ..     110     134 ..     108     140 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.5
      HTH_26 13 kseLargtgisaatlsrlv 31
                 + +a+++g+s++ + +++
  KIR61360.1 48 NTHVAQRLGVSRDMVGKWR 66
                67789*******9998886 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00059
      HTH_26   8 drgitkseLargtgisaatlsrlvk 32 
                 d + ++ ++ar tg+s++ +sr++ 
  KIR61360.1 110 DSHWSTRSMARETGLSQTAVSRIWR 134
                 5677999****************96 PP

>> KORA  TrfB plasmid transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.016        16      33      58 ..      47      72 ..      37      82 .. 0.82
   2 ?    3.8   0.0     0.068        68      35      51 ..     116     132 ..     111     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.016
        KORA 33 kqadvatelgltkqavsqavkrvwaa 58
                  ++va++lg+++  v++  +r +a 
  KIR61360.1 47 VNTHVAQRLGVSRDMVGKWRGRFLAR 72
                5689*************999887765 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.068
        KORA  35 advatelgltkqavsqa 51 
                   +a+e+gl+++avs++
  KIR61360.1 116 RSMARETGLSQTAVSRI 132
                 5789*********9976 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       9.9   9.9e+03      31      53 ..      47      69 ..      42      73 .. 0.71
   2 ?   10.8   0.1   0.00033      0.33      16      55 ..     294     332 ..     280     336 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9.9
       rve_3 31 lneelfrslaearekleawredY 53
                +n +  ++l   r ++ +wr ++
  KIR61360.1 47 VNTHVAQRLGVSRDMVGKWRGRF 69
                56666667777888888898776 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00033
       rve_3  16 NglvEsfngtlrdellneelfrslaearekleawredYNt 55 
                 N lvE+ +  l ++ l +++ rsla+++  +++w+e  Nt
  KIR61360.1 294 N-LVERWFAELTHRKLRRSSHRSLADLETDVQTWIEAWNT 332
                 4.89***********************************8 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2    0.0065       6.4       9      40 ..      27      58 ..      20      63 .. 0.87
   2 ?    4.0   0.4     0.033        33      31      47 ..     116     132 ..     112     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0065
  HTH_Tnp_ISL3  9 rsriTlrleayilelllesrsvkavArqlgvS 40
                  +s++ l+l+ +i+ l+ e+   ++vA++lgvS
    KIR61360.1 27 KSSQALALRSKIVLLCAEGLVNTHVAQRLGVS 58
                  5778899************999*********9 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.033
  HTH_Tnp_ISL3  31 kavArqlgvSwtTVwri 47 
                   ++ Ar++g+S t V ri
    KIR61360.1 116 RSMARETGLSQTAVSRI 132
                   677*************9 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.2     0.013        13      13      34 ..      44      65 ..      19      91 .. 0.84
   2 ?    5.8   0.1     0.018        18      15      36 ..     113     134 ..     101     146 .. 0.81
   3 ?   -0.4   0.1       1.5   1.5e+03      26      50 ..     319     342 ..     282     355 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.013
      HTH_31 13 aGLsqeevAerlgvsestlsrl 34
                +GL  ++vA+rlgvs++ ++++
  KIR61360.1 44 EGLVNTHVAQRLGVSRDMVGKW 65
                3888899*********988776 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.018
      HTH_31  15 LsqeevAerlgvsestlsrlEq 36 
                 +s + +A+ +g+s++ +sr+ +
  KIR61360.1 113 WSTRSMARETGLSQTAVSRIWR 134
                 7888889999999999999855 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.5
      HTH_31  26 vsestlsrlEqGrrgrpspavleal 50 
                 +  +  +++E    + p+p ++++ 
  KIR61360.1 319 LETDVQTWIEAWNTD-PRPFAWTRT 342
                 333444555555554.555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2873.78
//
Query:       KIR61361.1  [L=348]
Description: hypothetical protein TK50_27225 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-12   46.8  43.6    1.2e-07   31.7  19.4    2.3  3  Beta_helix  Right handed beta helix region
  ------ inclusion threshold ------
      0.012   15.6   1.7        1.1    9.2   0.0    2.5  2  DUF4957     Domain of unknown function (DUF4957)


Domain annotation for each model (and alignments):
>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.4     0.002        18      24      64 ..     165     210 ..     101     214 .. 0.56
   2 !   28.7  16.2   1.1e-10     1e-06      22     157 ..     163     313 ..     145     314 .. 0.84
   3 !   31.7  19.4   1.4e-11   1.2e-07       1     137 [.     193     345 ..     193     348 .] 0.93

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.002
                 -SEEE-SSS-.......EEES-EEES-SS-SEEE-TT-S-EEES-EE CS
  Beta_helix  24 yGiylrgssn......vvienneiannsgsGiyilgssnntisnnti 64 
                  Gi + + ++      +v+e n++      Gi i +++++ti++  +
  KIR61361.1 165 IGIDFSDKHQdvvnvgAVVE-NVLVERAAMGIIIGRATGVTIRDTDV 210
                 33333333333333333344.22222244444444444444444333 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 1.1e-10
                 SS-SEEE-SSS-.......EEES-EEES-SS-SEEE-TT-S-EEES-EEE---.....SEEE-TT--S--EEES-EEES-SS-SEE-TT........-S CS
  Beta_helix  22 ggyGiylrgssn......vvienneiannsgsGiyilgssnntisnntisdnn.....gggialfgasnnlienneitdnggsGiylny........ss 101
                 ++ Gi + + ++      +v+e n++      Gi i +++++ti++  +  n+       g++l+  ++++i++ + ++n + Gi l+          +
  KIR61361.1 163 NRIGIDFSDKHQdvvnvgAVVE-NVLVERAAMGIIIGRATGVTIRDTDVQYNGavqgyFHGLYLSIVDQVVIDGLNASHNVT-GIGLKVtdfynantET 259
                 5668888888888888888999.555555************************99998889999*************99966.6655522477766677 PP

                 --EEES-EEESTT--SEE---TT---EEES-EEES-SSEEEE-TT-SS--EEES-E CS
  Beta_helix 102 nntienNiidnnagsGividdsssnvtvtnNtitnnkgaGiavvgsssnvtvrnNt 157
                 +++i+n+ ++ n+  G  +++ + n  + +N++++n++ G+++  s +   + nN+
  KIR61361.1 260 SVSIRNSDFNYNYDRGTAVYYLQ-NAAIVDNVAHHNGSSGFNILWSTN-GSLINNQ 313
                 7**********************.999**************6666666.8888886 PP

  == domain 3  score: 31.7 bits;  conditional E-value: 1.4e-11
                 -SEEE-SS-E.EEESEEEES-.....SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT........-S-EEES-EEE---SEEE-TT--S--EEES-E CS
  Beta_helix   1 sgisingssnvtiknntisns.....ggyGiylrgssnvvienneiannsgsGiyilgs........snntisnntisdnngggialfgasnnlienne 86 
                 +gi+i + ++vti++ +++ +     + +G+yl   ++vvi++ + ++ + +Gi+++ +        + + i+n+ ++ n++ g a+++ +n  i +n 
  KIR61361.1 193 MGIIIGRATGVTIRDTDVQYNgavqgYFHGLYLSIVDQVVIDGLNASH-NVTGIGLKVTdfynanteTSVSIRNSDFNYNYDRGTAVYYLQNAAIVDNV 290
                 59**********************9999**************999999.9999999988999999999******************************* PP

                 EES-SS-SEE-TT-S--EEES-EEESTT.....--SEE---TT---EEES-EEES- CS
  Beta_helix  87 itdnggsGiylnyssnntienNiidnna.....gsGividdsssnvtvtnNtitnn 137
                  ++ng+sG+++  s+n ++ nN++++n       + i ++  s ++t+++Nt  ++
  KIR61361.1 291 AHHNGSSGFNILWSTNGSLINNQAYDNPlvanvSYDIWLNGCS-GFTISGNTYGSS 345
                 *********99999*****9*******9999999999999999.*******98765 PP

>> DUF4957  Domain of unknown function (DUF4957)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00012       1.1       1      48 [.      62     110 ..      62     118 .. 0.80
   2 ?    4.3   1.0     0.004        36      78     127 ..     260     310 ..     221     317 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00012
     DUF4957   1 GtYtlsgeidfskkvtirgvdkanhpkitlgkg.nasistgasLkiknl 48 
                 GtYtl++++++    t++g++++++p+itl+ g +  + t+as  ++n+
  KIR61361.1  62 GTYTLAASLKVYDGCTVQGTSASDRPVITLAVGrDEPVVTNASVPFTNV 110
                 9***************************765431555666677666666 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.004
     DUF4957  78 nCeikdvnkgliydnnk.kyviesivinnclvkniessggdiidfkkgfin 127
                 +  i++   +  yd  +  y +++  i +++ + ++ssg +i  + +g+  
  KIR61361.1 260 SVSIRNSDFNYNYDRGTaVYYLQNAAIVDNVAHHNGSSGFNILWSTNGSLI 310
                 444555555566654444899999999999999999999888888777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2420.29
//
Query:       KIR61362.1  [L=930]
Description: carboxypeptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-17   63.7   0.0    6.8e-17   62.2   0.0    1.6  1  Peptidase_M14  Zinc carboxypeptidase
     0.0034   16.5   0.1      0.023   13.8   0.0    2.0  2  AstE_AspA      Succinylglutamate desuccinylase / Aspartoacyla


Domain annotation for each model (and alignments):
>> Peptidase_M14  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   7.6e-21   6.8e-17       4     139 ..      74     221 ..      71     258 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 7.6e-21
                    HHHHHHHHSTTTEEEEEEEE-TTS-EEEEEEE-SSTT.............................STTST-CEEEEEE-SSTT-HHHHHHHHHHH CS
  Peptidase_M14   4 yldalaarypdlvrlvsiGkSvegRplkvlkisssat.............................eaeegkpvvlidggiHarEwigsalllyll 70 
                    ylda+ ++  ++v+   +G+Sv g pl ++++s+  +                              ae + + v++++++H++E  g++++l++l
     KIR61362.1  74 YLDAVDTASKRVVTG-VMGTSVLGQPLPYAIVSNERNvrpavlkgiaedvrslrdprvvnqqrageIAEAAPAIVWVTANVHGGEKSGTDAALKTL 168
                    899997775555555.5******************99****************************99999999*********************** PP

                    HHHHHHTTTSHHHHHHHHHEEEEEES-STHHHHHHHHHT-TTTTST-SBCTTSSSBS--GGGSSSSSTT CS
  Peptidase_M14  71 eqLlsaYgedeeikellddtdiyilpvlNPDGyeysstedrlwrknrsnakessceGvDlnRnFpdlwn 139
                    ++L+       e+++  d++  +i+p+ NPDG + s+         r+n+      G+D+nR++ +  +
     KIR61362.1 169 YELAAG--LSCEVQQRNDNLITIIVPTQNPDGRDASR---------RQNEY-----GFDMNRDWFARTQ 221
                    ****96..9****************************.........99998.....*******955533 PP

>> AstE_AspA  Succinylglutamate desuccinylase / Aspartoacylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.6e-06     0.023       5      73 ..     147     222 ..     145     234 .. 0.76
   2 ?   -0.0   0.0     0.041   3.7e+02     237     277 ..     862     902 ..     859     904 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.6e-06
                 EEEEE-SSTT-HHHHHHHHHHHHHHHCCC........ESCCEEEEEESSHHHHHCTSSSSSTT-S-CTTTTTCCCCC CS
   AstE_AspA   5 vlisAGvHGnElaGvellrqllkqleead........ilgeitlvplaNppAiaagsRyipidredLNRaFpgrslg 73 
                 v ++A+vHG E +G+ ++ + l +l+++              ++vp+ Np +  a +R  + +  d+NR +  r ++
  KIR61362.1 147 VWVTANVHGGEKSGTDAALKTLYELAAGLscevqqrnDNLITIIVPTQNPDGRDASRRQNE-YGFDMNRDWFARTQQ 222
                 5689**********988777777776654343222324445689*****************.********9888888 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.041
                 TTTETCTEEEETTEEEEECTSTEEEEESSSSEEEESCCTSC CS
   AstE_AspA 237 gddveagellakalvldslggekvelrapqdgvivfineaa 277
                   +v+ag+l  +  v+d++ +  ++ +a+ + ++v +n++ 
  KIR61362.1 862 TIQVAAGDLARTEAVVDRYTDTARVSVAHGSAYLVIPNPEG 902
                 5689*********************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (930 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 6598.84
//
Query:       KIR61363.1  [L=701]
Description: helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-13   51.2   0.0    1.5e-12   48.1   0.0    2.4  1  AAA_19           AAA domain
      2e-10   40.7   0.0    0.00053   19.6   0.0    2.4  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
    6.8e-08   32.2   0.0    2.1e-07   30.6   0.0    1.8  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    2.1e-06   27.6   2.2      0.049   13.4   0.0    3.2  3  AAA_30           AAA domain
    5.4e-05   22.7   0.0      0.016   14.7   0.0    2.3  2  PhoH             PhoH-like protein
    0.00048   19.5   0.1     0.0011   18.3   0.0    1.5  2  DUF2075          Uncharacterized conserved protein (DUF2075)
    0.00095   19.0   0.0      0.019   14.7   0.0    2.3  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0058   16.4   0.0      0.011   15.5   0.0    1.4  1  AAA_11           AAA domain
  ------ inclusion threshold ------
       0.44   10.9  10.3        0.3   11.5   0.1    3.4  3  AAA_16           AAA ATPase domain


Domain annotation for each model (and alignments):
>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   7.4e-16   1.5e-12       1     141 [.     184     536 ..     184     541 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 7.4e-16
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelggvkp.eeillvaftgrAakelrerlaalgae...atTiHrlal.................. 77 
                 q ++++a ++++l+v +GpGtGKT v  h+va+l+ ++   + + +l++ +  r  + + + l alg+      T+  l l                  
  KIR61363.1 184 QDDIIRAEASGPLIVQGGPGTGKTVVALHRVAYLLFAHPTMAeQAVLVLGPSPRFLEYIGQVLPALGETavvPATCDTL-Lpgisvdrdesralaeikg 281
                 6678888999**********************99988766552678999************998888886662344444.3566667777777777777 PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  KIR61363.1 282 ralwqpaledyvasllprardlklrwegefyvipaatvaqalgavrrrpyhparrvfaeqlhhiladavveqrealmnemeegfedilarvdrsmhydp 380
                 77788888888888888888888888888888888888888889******************************************************* PP

      AAA_19  78 .............................................................................................ldfddl 83 
                                                                                                              l+  d 
  KIR61363.1 381 daaagsdvdgllsdeevddlrrriaenaaiarfveawwptldaetllrdlladgdlvarfaprlsaaeiaavvaepapwassdiplldavadlLGDSDA 479
                 *****************************************************************************************9999777787 PP

      AAA_19  84 ltealelleeaeeekklqeee.llivDEfqdvdelqyrLlkallgekkklllvGDpdQl 141
                  +++ e++ ++++++     + ++ vDE+q+++e+q++++ + ++++  +++vGD+dQ+
  KIR61363.1 480 PQQEGEFVADRARRQRG-WVYgHVAVDEAQELSEMQWHMVVRRCPSRS-ITAVGDIDQA 536
                 88888998876666666.4456*****************999995666.*********8 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.7e-07   0.00053       2      45 ..     181     225 ..     180     233 .. 0.83
   2 !   18.6   0.0   5.3e-07     0.001     255     295 ..     497     536 ..     464     539 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.7e-07
                    SHHHHHHHHS.-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTG CS
  UvrD-helicase   2 npeqreaias.lggpilveAsAGsGKTfvlaerilrlikeeeiep 45 
                    ++eq ++i+   +gp++v  ++G+GKT v  +r+++l+ ++ + +
     KIR61363.1 181 QREQDDIIRAeASGPLIVQGGPGTGKTVVALHRVAYLLFAHPTMA 225
                    6789999999899************************98876444 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 5.3e-07
                    HHSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG- CS
  UvrD-helicase 255 erykeiliDEyQDTnkiQyrilkllasgheelfmvGDpkQs 295
                      y ++ +DE+Q ++++Q++++ + + ++  ++ vGD++Q+
     KIR61363.1 497 WVYGHVAVDEAQELSEMQWHMVVRRCPSR-SITAVGDIDQA 536
                    45899*****************9999998.7*********6 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.1e-10   2.1e-07       8      49 ..     656     695 ..     650     696 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.1e-10
    UvrD_C_2   8 hkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRArekl 49 
                  +++G+e++a+ ++dpd  +a+      + LY+a+TR++++l
  KIR61363.1 656 AQSKGLEWDATLLVDPDGITAEPRG--WNGLYVALTRCTQEL 695
                 689**************77776555..***********9987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.5e-05     0.049       1      35 [.     179     210 ..     179     259 .. 0.77
   2 !   12.0   0.1   6.2e-05      0.12      91     159 ..     501     570 ..     430     595 .. 0.79
   3 ?   -0.7   0.1      0.48   9.6e+02      37      62 ..     617     642 ..     613     667 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.5e-05
      AAA_30   1 elnaeQaaavealltsgdrvavltGpAGtGKttal 35 
                 +l+ eQ ++++a ++++    +++G++GtGKt + 
  KIR61363.1 179 TLQREQDDIIRAEASGP---LIVQGGPGTGKTVVA 210
                 5899******9998888...7***********863 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 6.2e-05
      AAA_30  91 llivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlvea...agigtaeLtevvRqke 159
                  + vDEa  ++  q++ +++++ +   ++  vGD +Q ++ ++   +++ v+a   ++ + aeLt  +R  +
  KIR61363.1 501 HVAVDEAQELSEMQWHMVVRRCPS--RSITAVGDIDQAEAAHRHTSWAQAVQAvlgDRWTPAELTICYRTPR 570
                 578*******************99..8999*************99999998876666778999999999844 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.48
      AAA_30  37 alreaweaa.ggrviglAptgkaAkvL 62 
                 a+re+ e+  gg+v ++Ap g+ A+ L
  KIR61363.1 617 AVRELRERWhGGTVGVIAPVGRIAE-L 642
                 455555555599**********986.4 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0044       8.8       3      39 ..     178     213 ..     176     231 .. 0.71
   2 !   14.7   0.0   7.9e-06     0.016     122     175 ..     501     553 ..     464     564 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0044
                 ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHH CS
        PhoH   3 kpktkeQkeylealkkndivfaiGpaGtGKtylaval 39 
                 ++ ++eQ+++++a  +  + ++ G  GtGKt +a+  
  KIR61363.1 178 STLQREQDDIIRAEASGPL-IVQGGPGTGKTVVALHR 213
                 5566677777766555555.556667********875 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 7.9e-06
                 EEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--------------THHHHHHT CS
        PhoH 122 fvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlpkgkksGlaealevl 175
                  v +DEAQ+++++q +m++ R  + s    +Gd+ q +  ++++s  + ++ vl
  KIR61363.1 501 HVAVDEAQELSEMQWHMVVRRCPSRSIT-AVGDIDQAEAAHRHTSWAQAVQAVL 553
                 5889******************988854.56*******9988777666666555 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   5.5e-07    0.0011       4      37 ..     196     231 ..     195     242 .. 0.76
   2 ?   -4.3   0.0       4.2   8.3e+03      92     102 ..     502     512 ..     484     517 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.5e-07
     DUF2075   4 vlVtGvaGtGKtvvllnllael..eddeeertavyl 37 
                 ++V+G++GtGKtvv+l+ +a l   +    ++av++
  KIR61363.1 196 LIVQGGPGTGKTVVALHRVAYLlfAHPTMAEQAVLV 231
                 58***************9999866444455555554 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 4.2
     DUF2075  92 vivDEAhrllt 102
                 v vDEA+ l +
  KIR61363.1 502 VAVDEAQELSE 512
                 56889988776 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.11   2.2e+02       2      14 ..     197     209 ..     196     226 .. 0.84
   2 !   14.7   0.0   9.5e-06     0.019      63     230 ..     499     695 ..     467     697 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.11
  Viral_helicase1   2 vvhGvpGcGKStl 14 
                      +v+G pG GK+ +
       KIR61363.1 197 IVQGGPGTGKTVV 209
                      8*********965 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 9.5e-06
  Viral_helicase1  63 gkililDEylllhaGyilllaalskaklvilfGDplQipfhsrnasfllahlpssl..shrvgr..rttyllpsdvaeilsak...vgteveve 149
                      +  + +DE++ l   + ++++++  ++ + ++GD  Q +  +r+   ++a+ +  +  +++++   +++y+ p+ v e++       g+++e  
       KIR61363.1 499 YGHVAVDEAQELSEMQWHMVVRRCPSRSITAVGDIDQAEAAHRHT--SWAQAVQAVlgDRWTPAelTICYRTPREVMELTAPFlrrAGSHNEPP 590
                      566789*******999999*******************9998877..99999888888777665115677777777766666633335555555 PP

  Viral_helicase1 150 rsgelkvetepkgq.e...kvlvyltftqalkealgvr..........................evttvhevqGltfdkVtlvllketdlelis 213
                      r++      ++ +  e   + + ++ ++++++++l++r                           v+  ++  Gl++d + lv   +       
       KIR61363.1 591 RAVRA----SGISPwErmvTPAELSDAVAEAVRELRERwhggtvgviapvgriaelqaavgddgPVLSAAQSKGLEWDATLLVDP-DGITA-EP 678
                      55555....3333333345677778888888888888899999*******************9*99***********98666655.44434.44 PP

  Viral_helicase1 214 esrenllvAlTRhrksl 230
                      ++ + l+vAlTR +++l
       KIR61363.1 679 RGWNGLYVALTRCTQEL 695
                      679*********99886 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.8e-06     0.011       2      63 ..     180     235 ..     179     242 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.8e-06
      AAA_11   2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapS 63 
                 l ++q + i+   s +   ++qG PGtgKT + ++ +++ll     ++  +a++ +Lv +pS
  KIR61363.1 180 LQREQDDIIRAEASGPL--IVQGGPGTGKTVVALHRVAYLL----FAHPTMAEQAVLVLGPS 235
                 56778888888888885..8**********99999999994....34557889999998888 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1         1     2e+03      54      99 ..      55     109 ..       7     150 .. 0.59
   2 ?   11.5   0.1   0.00015       0.3      16     127 ..     184     346 ..     174     375 .. 0.65
   3 ?    3.1   2.0     0.056   1.1e+02      45     152 ..     401     515 ..     394     526 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1
      AAA_16  54 iflrgkcdqlesaipy.........salaqalareellrqlldeaesaeleawre 99 
                   lr+++++l++a++          +  ++ + r +l  ++++e+++ +l +wr+
  KIR61363.1  55 RMLRQQYEDLRRATEGlvfgrldglDGTVRHIGRVGLRDDEGSEDDEPLLVDWRA 109
                 3333333333222211111222222335555555555555555555555555555 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00015
      AAA_16  16 lervrsgrp.elvllsGesGvGKsslv.rellralekd.....ggiflrgkcdqlesaipysa.laqalareellrqllde...............aes 91 
                  +++ + +  + +++ G +G+GK+ ++  +++  l ++      ++++ g   ++   ++y+  ++ al +  ++ + +d                ae 
  KIR61363.1 184 QDDIIRAEAsGPLIVQGGPGTGKTVVAlHRVAYLLFAHptmaeQAVLVLGPSPRF---LEYIGqVLPALGETAVVPATCDTllpgisvdrdesralAEI 279
                 55444444447899************97556544444456664466677777777...88866688888777777777777888888878777777777 PP

      AAA_16  92 aeleawrekleeala............................avpelagaea...........srllellkrll 127
                 + ++ w+ +le+ +a                                                 + ++e+l ++l
  KIR61363.1 280 KGRALWQPALEDYVAsllprardlklrwegefyvipaatvaqaL--------GavrrrpyhparRVFAEQLHHIL 346
                 78888888888888777777666666666666655443322220........13334444445555555555555 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.056
      AAA_16  45 lralekdggiflrgkcdqlesaipysalaqalareellrqllde....aesaeleawrekleeala...................avpelagaeasrll 120
                 +r++ ++   ++ +++++         ++ +l++e+llr+ll++    a      +++ +l +a                     av++l g+  s+  
  KIR61363.1 401 RRRIAEN---AAIARFVEA--------WWPTLDAETLLRDLLADgdlvA------RFAPRLSAAEIaavvaepapwassdiplldAVADLLGD--SDAP 480
                 4445544...344555555........99999**********9944331......33332222211234444444444433322244444444..7777 PP

      AAA_16 121 ellkrll.allsrderplv...lvlDdlqwadeasl 152
                 ++  +++ ++++r +r +v   + +D++q + e+++
  KIR61363.1 481 QQEGEFVaDRARR-QRGWVyghVAVDEAQELSEMQW 515
                 7777777555555.6665534467777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.51
# Mc/sec: 4116.05
//
Query:       KIR61364.1  [L=111]
Description: hypothetical protein TK50_27255 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 860.58
//
Query:       KIR61365.1  [L=216]
Description: hypothetical protein TK50_27260 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1499.49
//
Query:       KIR61366.1  [L=1371]
Description: hypothetical protein TK50_27265 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.4   0.3       0.81   10.0   0.3    2.4  1  FliG_M    FliG middle domain


Domain annotation for each model (and alignments):
>> FliG_M  FliG middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   4.5e-05      0.81      20      72 ..     573     627 ..     557     630 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 4.5e-05
                 HHTS-HHHHHHHHHTS-HHHHHH.HHHHHHTCCTC.SHHHHHHHHHHHHHHCHHH CS
      FliG_M  20 LsyLdpeqAAevLseLpeelrae.virriatlekv.spevlkeveevLekklssv 72 
                 L +++pe AA++Ls+Lp  l  +  + r a l+++  p+   + e+ L + l sv
  KIR61366.1 573 LGQVPPEEAADLLSRLPAPLDDDqAAVRAAALDRLtAPQLRARAEQRLAEPLLSV 627
                 8899**************8665427889999999857888888888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 8970.77
//
Query:       KIR61367.1  [L=90]
Description: hypothetical protein TK50_27270 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-25   88.9   0.0    1.6e-25   88.8   0.0    1.0  1  DUF2610   Domain of unknown function (DUF2610)
  ------ inclusion threshold ------
       0.16   12.2   0.5       0.73   10.1   0.0    1.9  2  DUF2795   Protein of unknown function (DUF2795)


Domain annotation for each model (and alignments):
>> DUF2610  Domain of unknown function (DUF2610)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   0.0   1.8e-29   1.6e-25       1      79 [.       1      80 [.       1      82 [. 0.95

  Alignments for each domain:
  == domain 1  score: 88.8 bits;  conditional E-value: 1.8e-29
     DUF2610  1 lkkfvvpcefg.gqkspfaiyigepkpdehPlefQadWlskeRggqvpeevveslskLfklakennvsfeeLivyaLenA 79
                +++++vpc+f  g++++f+  +g+p  d+hPle+Q +Wl++eRggq p+evv+sl+++++la e++ ++e+L++ya+++A
  KIR61367.1  1 MRRLMVPCTFDtGETAMFPFVVGQPCADSHPLEQQLAWLARERGGQAPQEVVDSLAQVHRLAVEQSTKLEDLVAYAMREA 80
                789*******72578999***********************************************************998 PP

>> DUF2795  Protein of unknown function (DUF2795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   8.2e-05      0.73      11      31 ..      34      56 ..      34      58 .. 0.90
   2 ?   -0.2   0.1      0.13   1.2e+03      11      20 ..      70      79 ..      69      87 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 8.2e-05
     DUF2795 11 deLveyArrng..ApdevleaLe 31
                ++L++ Ar+ g  Ap+ev++ L 
  KIR61367.1 34 QQLAWLARERGgqAPQEVVDSLA 56
                689999*****999******996 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.13
     DUF2795 11 deLveyArrn 20
                ++Lv yA r 
  KIR61367.1 70 EDLVAYAMRE 79
                7999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 669.35
//
Query:       KIR61368.1  [L=1242]
Description: hypothetical protein TK50_27280 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-28   98.9   0.0    7.2e-28   97.8   0.0    1.6  1  CHAT      CHAT domain
  ------ inclusion threshold ------
      0.065   13.6   1.0       0.45   10.9   1.0    2.5  1  DUF1771   Domain of unknown function (DUF1771)


Domain annotation for each model (and alignments):
>> CHAT  CHAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.0   8.1e-32   7.2e-28       3     289 ..     956    1241 ..     954    1242 .] 0.86

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 8.1e-32
                  xxxxxxxxxxxxxxxxx.....xxxxxx....xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xx RF
        CHAT    3 saraLydlliaPleael.....dgqsvr....qlvivpdgeLqliPfealvdpdg..rylleryavsyapsarllselrkaaasaasalq.....lv 83  
                  ++ +L+++  +P+  +l     +    +    ++++ ++g L  +P++a + + g    +ler + sy+  ++ ls  + + + +a + +     + 
  KIR61368.1  956 VLAWLWETTAEPVLTALghssaS----EneppRVWWCLTGPLTMLPIHAAQRGHGspDAVLERVVSSYTLTLTHLSLSAGRTPTRAGVTDerpcvIT 1048
                  6789********66666555433....14566*****************999999999999999999999999988887777777777667786777 PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CHAT   84 vgdpkfdaaellrklvfpelpgteaEaeaiakllaegelkvllgeaatesalksalsrryrvvHfatHgvfnanpplqsglvlsaenseedglLtae 180 
                  +++p             p+l g e+ a+ + +ll+    + l g ++t+++l++al  + r+vH+a+Hg  +  +pl++g++       +dg +t++
  KIR61368.1 1049 IAQPPGL----------PPLVGPERQARRLDELLDPV-PVRLDGREVTRDRLLQAL-GSHRIVHIAGHGHQDVSEPLRGGVAA------SDGAMTFQ 1127
                  7777554..........*****************764.477778899*********.**************************......69****** PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxx RF
        CHAT  181 eilelnldgaelVvLsACqtglgevidgegvlgLaralllaGarsviaslwpVdd......eatalLmkrfyqnlla.....glskaeALreaqlkl 266 
                  ++++     a+lV+L AC+t++g ++  ++ +++a+al+laG r+via+lw+V d       + +++++++y+ l+        ++  AL++a ++ 
  KIR61368.1 1128 DVAAHPVG-ADLVFLDACHTAIGGTDVLNEGIHVASALQLAGGRHVIATLWQVVDhdlvtlPGEEEFVTAVYRDLAPegtvlVDRAPYALHQALRRW 1223
                  ****5555.**************9998888899********************9976655556789***********99999899999*****9999 PP

                  xxxxxxxxxxxxxxxxxxxxxxx RF
        CHAT  267 lsgkrdqkpshapyyWaaFiliG 289 
                  +++      s+    Wa + ++G
  KIR61368.1 1224 RRERP----SD-VGAWAPYLHYG 1241
                  99975....66.99999999888 PP

>> DUF1771  Domain of unknown function (DUF1771)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.0     5e-05      0.45      20      58 ..     756     794 ..     754     798 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5e-05
     DUF1771  20 ekAaeAyrrGdgaaAkelseqGkehgekmeeanreAaea 58 
                 e+A++A ++Gd a A else+++ +   +    r+A ++
  KIR61368.1 756 EAASAALEAGDAALALELSERARFLSWGAALRRRHALAE 794
                 78*********************9877666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 8977.45
//
Query:       KIR61369.1  [L=282]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-44  152.3   6.9    1.3e-44  152.3   6.9    1.4  2  MLTR_LBD  MmyB-like transcription regulator ligand binding do
      2e-15   56.9  14.6    2.4e-15   56.6  11.6    2.8  2  HTH_31    Helix-turn-helix domain
    2.5e-07   30.6   0.1    6.8e-07   29.2   0.1    1.7  1  HTH_3     Helix-turn-helix
     0.0095   15.8   0.2      0.028   14.3   0.2    1.8  1  HTH_25    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> MLTR_LBD  MmyB-like transcription regulator ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.9   8.5e+03      72     100 ..      48      76 ..      33      84 .. 0.66
   2 !  152.3   6.9   2.9e-48   1.3e-44       2     168 .]     103     268 ..     102     271 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.9
    MLTR_LBD  72 ralvarLraeaarrpddpalaalvaeLsa 100
                  ++v rL +  + +p  + l al + L+ 
  KIR61369.1  48 VDYVVRLEQGRSSQPSTQLLGALARALRL 76 
                 55666666666667777777777776665 PP

  == domain 2  score: 152.3 bits;  conditional E-value: 2.9e-48
    MLTR_LBD   2 rpalrrlLdalepvPAlVldrrwdvlaaNraaraLlgdpaalpeperNllrlvfldpglrpli..edweevaralvarLraeaarrpddpalaalvaeL 98 
                 r++l rlLd ++++PA+Vl++  ++la+Nr+   L gd + l++++r +++++f+dp++r+l+   +w+++ar+ va+Lra a+rr++dpa++ l+++L
  KIR61369.1 103 RAGLVRLLDLVGDTPAMVLSDLGEILAQNRMSILLSGDHTGLTGDRRYVAYRYFTDPAVRDLHgpDEWQRHARQQVADLRAVAGRRAGDPAVTGLIERL 201
                 899*************************************************************9********************************** PP

    MLTR_LBD  99 saaspefarlwarhdvaarrsgrkrlrhpevgeltldsetlgtpddptlelvvytaePgdesteaalrlL 168
                 +aas++f+rlwa+h+va rr++rk++ hp+vg++t+d+etl tpd  ++   +++ +P+d+  +++l+lL
  KIR61369.1 202 RAASDDFRRLWAEHEVAVRRADRKTFLHPRVGRVTMDCETLVTPDLGQQ---LLVLTPADAGDREKLDLL 268
                 ************************************************9...444455555555555554 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6  11.6   5.5e-19   2.4e-15       1      64 []       5      84 ..       5      84 .. 0.98
   2 ?   -2.4   0.0       1.4   6.2e+03      42      53 ..      93     104 ..      88     117 .. 0.65

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 5.5e-19
      HTH_31  1 aLGalLralRera................GLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerael 64
                +L+++Lr++Re+                 GL++eevA ++g+s++++ rlEqGr   ps + l alaral+l+++er +l
  KIR61369.1  5 QLADFLRRRREAIrpaeagiadgprrrtaGLRREEVAMLAGMSVDYVVRLEQGRSSQPSTQLLGALARALRLTDDERSHL 84
                69*********9999**************************************************************998 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
      HTH_31  42 pspavlealara 53 
                 p+ + +++lara
  KIR61369.1  93 PPADGIARLARA 104
                 555556666665 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   1.5e-10   6.8e-07       5      53 ..      30      79 ..      29      80 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.5e-10
                HHHTTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  5 RkqlglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvsld 53
                R  +gl +ee+A ++G+s+ ++ r+E G  ++Ps + l +la+aL ++ d
  KIR61369.1 30 RRTAGLRREEVAMLAGMSVDYVVRLEQGrSSQPSTQLLGALARALRLTDD 79
                5568*****************************************98765 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   6.2e-06     0.028       5      57 ..      29      76 ..      28      81 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.2e-06
                HHHTTT--HHHHHHHSS--HHHHHHHHCT--TTSS-HHHHHHHHHHHHHHTT- CS
      HTH_25  5 aRearglsleevaketkIrkdylealEeddfdalpepvylrgylrnYArlLgl 57
                +R+ +gl +eeva    +++dy+ +lE++++++        ++l ++Ar+L l
  KIR61369.1 29 RRRTAGLRREEVAMLAGMSVDYVVRLEQGRSSQPST-----QLLGALARALRL 76
                5999*************************9887443.....356666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2138.45
//
Query:       KIR61370.1  [L=328]
Description: aldo/keto reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-65  219.2   0.0    7.2e-65  219.1   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.1   0.0     4e-69   7.2e-65       2     292 ..      16     305 ..      15     307 .. 0.95

  Alignments for each domain:
  == domain 1  score: 219.1 bits;  conditional E-value: 4e-69
                   EEEE-SSS-ST..TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE....--SSSTTSSSS-HHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgsk.eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv....dlrdaeiksglskenireslees 93 
                   +glG++++++  ++ ++ e+++++r+al+aG++++Dt+++Yg+g++e ll eal     +r++++++ K     + +     ++ +++++r+ l  s
    KIR61370.1  16 VGLGAMSMSGAyGPADRGESIATVRAALDAGVTLVDTGDFYGMGHNELLLSEALRG--RDRDSYLLSVKFgqqvGPGMRFAGQDSRPASVRNFLSYS 110
                   89******************************************************..************877766666677888889********* PP

                   HHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBS CS
  Aldo_ket_red  94 lkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliays 190
                   l rLg+d+vD++  +r d+s+p ie++++a++e++++G +r++G+S++++e +++a  +++++++ +q+ey+ll++  e+ +l++++++g++l ay+
    KIR61370.1 111 LTRLGVDHVDIYRPARLDRSVP-IEDTIGAIKEMIDAGYVRYVGLSEVDAETVRRA--HAVHPVADLQIEYSLLSRAVEADVLPTLRELGIGLTAYG 204
                   **********************.*******************************99..*************************************** PP

                   TTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHH CS
  Aldo_ket_red 191 plggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeeva 287
                   +lg+Gll+g++++ +  ++ ++ +++ ++e+ s nl ++e+l+++a  +g+++aqla++++ +q++ +++++ga++ ++l + l al+++ls+++++
    KIR61370.1 205 VLGRGLLSGNWVPGRADDPRNHSPRF-STENASHNLALVEALRRVADAKGCTVAQLAIAWVAAQDPSIVPLVGARTRQRLAEALPALAVQLSADDLE 300
                   ************99998877666665.349******************************************************************* PP

                   HHHHH CS
  Aldo_ket_red 288 eldel 292
                    ++++
    KIR61370.1 301 DIEAA 305
                   *9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2326.59
//
Query:       KIR61371.1  [L=475]
Description: hypothetical protein TK50_27300 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3292.21
//
Query:       KIR61372.1  [L=408]
Description: hypothetical protein TK50_27310 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-15   56.4  45.1    2.1e-15   56.1  45.1    1.0  1  MFS_3     Transmembrane secretion effector
    9.7e-15   54.3  60.2    6.7e-10   38.4  26.7    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1  45.1   2.3e-19   2.1e-15       4     388 ..       1     391 [.       1     407 [. 0.85

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 2.3e-19
       MFS_3   4 faPlrqkvFrviWiaslvsnlGtliqevaasWlmtd.isasplmvAlvqaaatLPifllsilaGalaDnfdr.Rkvllavqlllalvsvlltvlaalgl 100
                 +aPlr  +Fr  W a  vs  G  + +va+    +  + a p+++  + a a +P +l++i+aG     f +    ++ + ++  +v++ l     lg 
  KIR61372.1   1 MAPLRVPAFRRYWGAVSVSTAGDGVLSVAVPVAAAVlLGAGPAQMGWLTALAWIPSVLFAIPAGGWVARFRHpLTPMIGADVVRFAVTASLPAAWWLGW 99 
                 59*********************999999987766525799**********************98666665516779********************** PP

       MFS_3 101 lspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsylalivallrwkrevrksslp 199
                 l+  +l alt +++  + +   a  A  + l++ + + a   L      +a  +G   gG+lv ++ a +a a++alsyl   + l+r+ r  ++ + p
  KIR61372.1 100 LHLPALYALTAVVASASVVFVVADAALFPTLLDDDRLVAGQSLVYSARTVASVAGSGAGGLLVPVLSAPVAVAADALSYLWSAALLTRIDR--PAARTP 196
                 *******************************************99999********************************99888887765..566778 PP

       MFS_3 200 rEkllealraglRftaasreikavlvRaalFglsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvl 298
                   +     + glRf  as+ ++ +l  ++   ++     aLL l   ++l+  a+v G++lga  +GA++g++ l+ + +rl+  r +   ++  A+ l
  KIR61372.1 197 PRRTAPVSTTGLRFIMASPALRGALGVTTTANFFNLMFHALLVLFLTRTLHLSAAVTGLVLGAEAAGALVGSMALPAVARRLGMPRSLVAGSLLSAAPL 295
                 888889999****************999999999999**********************************************9887777777777766 PP

       MFS_3 299 lslalass..lwvavlvll...lgGaaWitalstlnvavqlavPrWvvgRalavYltvlaGglaaGsllWGavaealsvtlaLlaaaaa.lllaaa 388
                  ++a+a    ++++++vl+   l+G +  +   ++ ++  ++vP  +++ +   Y+t+++G    G++l G v+++++++ a+ +a+a+ ll+   
  KIR61372.1 296 TAVAVAAGpaVVIVTVVLVasfLSGVGRSVQDISVAATFVATVPVPLRAQVRGAYQTISFGVRPVGAVLGGLVGQSVGLRPAVVLATAGgLLAFLW 391
                 6666665400444444444222455555444444555556789*************************************9988776551554433 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4  29.6   2.3e-08    0.0002       4     225 ..      15     229 ..      12     240 .. 0.77
   2 !   38.4  26.7   7.5e-14   6.7e-10       6     180 ..     226     401 ..     220     408 .] 0.82

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.3e-08
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllg.lllfalglllll..fa..sslwlllvlrvlqG 96 
                 a+ +s+++ ++l++a+p a a  lg+ p+++g+l++l  + ++++++p+G ++ rf +    ++ + ++ fa+++ l++  +    +l++l++l ++ +
  KIR61372.1  15 AVSVSTAGDGVLSVAVPVAAAVLLGAGPAQMGWLTALAWIPSVLFAIPAGGWVARFRHPLtPMIGAdVVRFAVTASLPAawWLgwLHLPALYALTAVVA 113
                 677899999********999999*********************************7555455555144455555555554324567777999999999 PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpap 195
                  ++ +++ a aal+  +  +++   + +l++++  ++++ g ++ggll+  l+ +++  + a+ +l ++    ll + ++p+ ++++  +     +p +
  KIR61372.1 114 SASVVFVVADAALFPTLLDDDRLVAGQSLVYSARTVASVAGSGAGGLLVPVLSAPVAVAADALSYLWSAA---LLTRIDRPAARTPPR-RT----APVS 204
                 9889999999****************************************************99999977...555555555555544.44....4666 PP

       MFS_1 196 lvpawkallkdpvlwillialllfffgfsg 225
                  +  ++ + ++p l     ++l++++  ++
  KIR61372.1 205 TTG-LRFIMASPAL----RGALGVTTTANF 229
                 666.9999999944....444444333333 PP

  == domain 2  score: 38.4 bits;  conditional E-value: 7.5e-14
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa....sslw.lllvlrvlqGlga 99 
                   ++++ ++ ++++  +l+++l++s+++ gl+l++ a+ga+v+s+ l +++ r+G  r l++g ll+a+ l++ ++a      +  ++lv+ +l+G+g 
  KIR61372.1 226 TANFFNLMFHALLVL-FLTRTLHLSAAVTGLVLGAEAAGALVGSMALPAVARRLGMPRSLVAGSLLSAAPLTAVAVAagpaVVIVtVVLVASFLSGVGR 323
                 445555555555555.999************************************88888888888888845555433433335558************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperk 180
                 ++   ++aa +++ +p + r+++ g +++ +     +g++lggl+ +s+g r + +++++ +llaf+   + lp  +++r+
  KIR61372.1 324 SVQDISVAATFVATVPVPLRAQVRGAYQTISFGVRPVGAVLGGLVGQSVGLRPAVVLATAGGLLAFL---WALPSLRSPRE 401
                 *****************************777777*****************************999...77755555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3014.04
//
Query:       KIR61373.1  [L=402]
Description: hypothetical protein TK50_27320 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-17   63.6  36.3    1.5e-17   63.6  36.3    2.1  2  MFS_1       Major Facilitator Superfamily
    4.2e-05   22.6   0.1     0.0001   21.3   0.1    1.8  1  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6  36.3   1.7e-21   1.5e-17      19     341 ..      29     340 ..      10     344 .. 0.79
   2 !    4.2   5.1    0.0018        17     114     167 ..     328     382 ..     327     401 .. 0.75

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 1.7e-21
       MFS_1  19 lplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslw.lllvlrvlqGlgagalfpagaaliadwfp 115
                 +  + +   g+++ ++gl l++ +l a+v+s+++G+++dr+G+rr+l++ ++++a+g +l+ l   ++   +++l v  G+ + +  p+ +al+  ++p
  KIR61373.1  29 VV-YFTLRVGLDAKQVGLGLSAAGLSAFVSSVLFGVIADRVGARRLLIVLFTTLAVGfGLYTL--VGSAaQFYALVVAVGFIEYGTGPTNGALVGNLVP 124
                 33.77778999**********************************************666666..455558**************************** PP

       MFS_1 116 keergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwilli 214
                  +er +  +++ + f++G+ +g +++++ a  l+ r++ +i    ++l++  ++ll+++ p +++r+         +p +++  + a++ +++l  ++i
  KIR61373.1 125 ADERVKLKAMMRSVFNIGFSIGIGVAAVAA--LSQRLLVLIPLTTAALMVG-AALLVTRLPDAPSRP---------VPVGFKR-FAAVRDPRFL--AVI 208
                 **********************99999888..7778777777777777622.223333333333333.........3334455.8888899977..444 PP

       MFS_1 215 alllf.ffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGf 312
                 ++ ++ +  +s +l+++pl++  +  l+ ++l+ lll +  ++++ +++ a+r +d +    rl    +  l++ ++++ l + +++v+l++v +++G+
  KIR61373.1 209 GVSTIlASHVSVILVTMPLWALNRTTLP-HFLVPLLLIFNTVFVILFQVRASRGADTVAGAGRLARRSGYWLAGGCLVIALTALEDNVALACVAIVAGV 306
                 444441445555****************.9****9999999999999********99777777777777777777777777777799999997777777 PP

       MFS_1 313 .glgfv....fpsllalasdlappeeagtasglf 341
                   l+++     +s + la  lap++++g ++g+f
  KIR61373.1 307 lILSVAevmqAASGWGLAFGLAPEHAQGEYLGAF 340
                 66666666669999999***************98 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0018
       MFS_1 114 fpkeergraigllsagfslGailgpllggllasslg.Wravfyilaivsllafvl 167
                 +p+  +g ++g + + +    i+gp++ + l+  +g W ++ ++la++++ a+++
  KIR61373.1 328 APEHAQGEYLGAFDLHVITQNIVGPAVLSGLVITFGfWGWLGIALAALAASALIV 382
                 688899999999999999999***7777777755555999999999999999664 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   1.1e-08    0.0001      24      77 ..      30      84 ..      28     257 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.1e-08
  MFS_1_like 24 iylk.skglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsav 77
                +y++   gl+a+++g+ ++++ l +++s+ ++gv+aDr+g+r  +++l + l++ 
  KIR61373.1 30 VYFTlRVGLDAKQVGLGLSAAGLSAFVSSVLFGVIADRVGARRLLIVLFTTLAVG 84
                5777678*************************************99999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3076.94
//
Query:       KIR61374.1  [L=1075]
Description: hypothetical protein TK50_27335 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-88  296.0   0.1    5.4e-88  295.4   0.1    1.3  1  AMP-binding    AMP-binding enzyme
    6.4e-85  285.5   0.0    8.3e-85  285.2   0.0    1.1  1  Condensation   Condensation domain
    4.3e-18   66.1   0.7    2.8e-17   63.4   0.2    2.7  3  AMP-binding_C  AMP-binding enzyme C-terminal domain
    2.2e-12   47.1   0.0    7.1e-12   45.5   0.0    2.0  1  PP-binding     Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.4   0.1   1.2e-91   5.4e-88       1     423 []     465     868 ..     465     868 .. 0.87

  Alignments for each domain:
  == domain 1  score: 295.4 bits;  conditional E-value: 1.2e-91
                  HHHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEE CS
  AMP-binding   1 leeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvl 98 
                  ++e++a+tpd+va+    ++ t+TY+eld+ + r+AagL  lG+++gdrV++ll +sp  ++a+++++++Gav+vpl+p++++++l  i ++++ +++
   KIR61374.1 465 FDEHVARTPDAVAVRH--RDATVTYAELDRWAGRIAAGLADLGIGHGDRVGLLLGRSPAVIAAIVGVWRLGAVYVPLDPEYPRQRLDLITASAGLRIM 560
                  7899**********66..9******************************************************************************* PP

                  EETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHC CS
  AMP-binding  99 iatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletr 196
                  +   +       + +a++l a + + + d        +l++++   e+     + + +  dd+ay+iYTSG+TG PKGV + h+ l a  +    +  
   KIR61374.1 561 L--AEP----GTAGTAGALTADRGIRLAD------PHTLDGAA---EV-----PRAYPAGDDPAYVIYTSGSTGVPKGVLVGHGGLDALNTPT--PGG 636
                  *..322....2234444444444433333......22333333...33.....2335789*************************97774442..333 PP

                  SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT-SEEEEESS CS
  AMP-binding 197 fklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sgalkaakkakdlsslrlvllgge 293
                   ++++ddv+l+  ++++++++ +e+++al+ G+++v++++ +  d ++l++l++++ vt ++ +P +l +ll     l+  +     s+lr+v+lgge
   KIR61374.1 637 LDVSADDVWLAASSFSFDASV-WEMWGALTTGGRLVVADQADLVDRERLAALVHREAVTAVFQTPGALYRLLPpY--LR--QLGGGWSRLRYVVLGGE 729
                  66788***************8.*******************99999***********************997643..22..12346788********* PP

                  -EBHHHHHHHHHHHTC...EEEEEEEEGGGSSECEE...CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHH CS
  AMP-binding 294 plspellrffralfge...evlegYGlTEttgvvtv...lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeat 385
                  +ls + l+++    ++    ++++YG TE t+++t+   ++ e  +++ g++G plp ++++++De  ++p + +++Gel+ +g  v+ gY ++pe+t
   KIR61374.1 730 ALSWARLTQLVGGAPQldtVFVNMYGITEGTIHCTIfaaPTAELARVREGTIGVPLPSARCYVLDER-LRPTGVDVPGELYCGGVLVAHGYVNNPELT 826
                  *******9*9999999*999**************888886667788999****************98.****************************** PP

                  HHHEEE...T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 386 aeafds...e.grwlrTGDlgrldedGyleivgRkkdliklr 423
                  a +f +   + g +++TGD++++ +dG++ ++gR + ++ lr
   KIR61374.1 827 AARFLPdpyGrGAMYKTGDVVKWGTDGNMIYLGRNDTQVQLR 868
                  *****77663345**********99*************9885 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.2   0.0   1.8e-88   8.3e-85       7     445 ..       7     435 ..       3     444 .. 0.93

  Alignments for each domain:
  == domain 1  score: 285.2 bits;  conditional E-value: 1.8e-88
                   XXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHHHHHHH CS
  Condensation   7 lspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeeaieefa 103
                    s aQ+r++fl++l++++ ay++++ ++l+g l++e+l+ al  ++ rh+aLRt+f    +g  vQ + ++ ++e+e++  + ++++++e  + +++
    KIR61374.1   7 ASFAQERLYFLNQLQPGNPAYVVAFGVHLHGTLHPEALRAALLRVTARHEALRTTFALV-DGVLVQLVADSPQAEIEIEAGEWADRDTQEGFLRTLV 102
                   589*****************************************************888.*********99999998888887778888888***** PP

                   HHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--..HHHHHHHHHHHHCSHHHHHHHHHH CS
  Condensation 104 qkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktp..YkdyaeweqqyleskdlekeeaYW 198
                    +++++ f L++gp +ra+l ++  ++++l + vHHi  DG+S+g+llrdla+ Y++++ g +     ++   Y  ya++  q +  ++  +  ++W
    KIR61374.1 103 AEQARRAFALDEGPVLRAYLRSWGPDEHTLAVLVHHIACDGWSVGLLLRDLAAEYNAALAGADGAGHAEPAesYLAYAQR--QRADWERDGSGLDFW 197
                   ***********************************************************99886544444345******9..445666668889*** PP

                   HHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC--SS- CS
  Condensation 199 seqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdiermvGlF 295
                   +++l+   p+l+L++d +rp +   ++  l+  +d+ + ++l+  a+e+g+tl  v laa++++Ls+y +qd++v+g+++++R +e  + er vG  
    KIR61374.1 198 RTTLRD-VPQLALLTDFPRPSVLGNRGAVLRRPVDAGLVDRLTAWAREHGATLFAVTLAAYAAVLSRYARQDEVVIGVPVANRMDE--AEERLVGCL 291
                   *****7.*********9***99999999**********************************************************..********* PP

                   EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE...E.....SS CS
  Condensation 296 vntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvssveaeeeskyd 392
                   vntlP+r+d+++  +f+el+ r +++ + a+ +q++p+ee+v+ +  +r+ s  pLf+++++ +n++    e +  +l+e +++       +++k+d
    KIR61374.1 292 VNTLPIRLDLADRPRFAELVDRARRASMAAFANQDVPFEEIVRATVGERQLSHAPLFQTSLTVQNFPFAFPEFDGVKLTEVDVE------VDVTKFD 382
                   *****************************************************************9999888888888888888......55889** PP

                   EEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC- CS
  Condensation 393 lsleasetngkltikieYntslFdeetierflerlkelleqviehpeqklsel 445
                   + l++  ++++  ++ eY+t+lF eet+ ++l++++++l +++++p+++ s +
    KIR61374.1 383 VGLTLDVSTDAPFLRAEYSTELFTEETVATLLRHYLTFLRAIVDEPDAEPSMV 435
                   *********************************************99865544 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.3   1.5e+04      44      62 ..     236     269 ..     225     273 .. 0.49
   2 ?   -1.6   0.0       1.2   5.6e+03      16      52 ..     270     316 ..     258     330 .. 0.59
   3 !   63.4   0.2   6.4e-21   2.8e-17       1      76 []     876     945 ..     876     945 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.3
                    HHHHHHHHH...............HT-TTTS-SE CS
  AMP-binding_C  44 eeLkahvrk...............elgpyavpkk 62 
                    + L a++r+                l  ya+ ++
     KIR61374.1 236 DRLTAWAREhgatlfavtlaayaaVLSRYARQDE 269
                    5566666554444444422222224555555555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
                    EEE-----TTS....---EEEEE..E---.....---..HHHHHHHHHHH CS
  AMP-binding_C  16 aVvGvpdevkG....ealvafVv..lkdg.....sea..leeeLkahvrk 52 
                    +V+Gvp + +     e+lv++ v  l          +    +eL++++r+
     KIR61374.1 270 VVIGVPVANRMdeaeERLVGCLVntL--PirldlA-DrpRFAELVDRARR 316
                    57777777777777788888888331..1212121.12345677777654 PP

  == domain 3  score: 63.4 bits;  conditional E-value: 6.4e-21
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE----.--HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgs.ealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    evEsa +shpaV+ +aV + +d+     lvafVv   g+ +++e+eL+ hvr++l++y+vp ++  v+++p+t++GK
     KIR61374.1 876 EVESAFLSHPAVRSCAVAAEDDQ-----LVAFVVG--GTgPDTERELRGHVRQTLPAYMVPARILTVEAIPLTAHGK 945
                    8*****************99999.....******8..5434689********************************9 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   1.6e-15   7.1e-12       1      66 [.     978    1040 ..     978    1041 .. 0.93

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 1.6e-15
  PP-binding    1 eklrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaay 66  
                  e++r++++evlg++  ++++++++fdlG++S ++++l+ +l +e g+e++++dlf   t+a  aa+
  KIR61374.1  978 ERVRACWSEVLGRS--DVGLHDNFFDLGGHSFALIALQQRLADE-GLEVSVTDLFRAGTVAGCAAR 1040
                  589*********98..577*************************.**************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1075 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 7171.46
//
Query:       KIR61375.1  [L=88]
Description: hypothetical protein TK50_27345 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-13   50.9   0.3    1.8e-13   50.6   0.3    1.1  1  PP-binding  Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.3     1e-17   1.8e-13       4      63 ..      14      71 ..      11      74 .. 0.92

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 1e-17
  PP-binding  4 relvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlael 63
                 el++evlgv++ +  +d+d+fdlG++Sl+a++l   +++e+++++    ++e+p  a+l
  KIR61375.1 14 EELWKEVLGVDTVD--DDDDFFDLGGHSLSALRLSTLIRQELNLAVMFGHVLENPRFADL 71
                689********877..9*****************************99999999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 651.67
//
Query:       KIR61376.1  [L=314]
Description: NADPH:quinone reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-15   58.8   1.7    2.5e-15   57.7   0.5    2.2  3  ADH_zinc_N_2  Zinc-binding dehydrogenase
      5e-09   36.2   0.1    9.8e-09   35.3   0.1    1.4  1  ADH_zinc_N    Zinc-binding dehydrogenase
      1e-08   35.0   0.0    2.8e-08   33.6   0.0    1.5  1  ADH_N         Alcohol dehydrogenase GroES-like domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.7     1e+04      39      54 ..      93     106 ..      73     141 .. 0.55
   2 ?   -2.6   0.0       1.8   1.1e+04      21      42 ..     144     164 ..     123     186 .. 0.53
   3 !   57.7   0.5   4.2e-19   2.5e-15       6     133 .]     191     304 ..     187     304 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.7
                   HHHHEEEEEEEEE--.- CS
  ADH_zinc_N_2  39 slkvlpggGrlvsig.g 54 
                   +   l+g G++ + +  
    KIR61376.1  93 A---LSGAGTYAETTvL 106
                   2...3566777665522 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.8
                   T-EEEEEES-HHHHH.HHHHHH CS
  ADH_zinc_N_2  21 egvDvvldtvggealleaslkv 42 
                   eg  + ++ vgg +  + + ++
    KIR61376.1 144 EGATLLVNGVGGSTG-QITAQL 164
                   444555555554444.222222 PP

  == domain 3  score: 57.7 bits;  conditional E-value: 4.2e-19
                   EEETTSTTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHH CS
  ADH_zinc_N_2   6 vidyrtedfe...aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaaliee 99 
                   ++ y++ d+    +++ + gvD  +d+vgg+al  +s+++l       +  +     +ll  a     r +  efl  ++ + +a  le++aal+ +
    KIR61376.1 191 FVSYTAGDVPgqvRQLAPSGVDGLIDLVGGDAL--RSVAAL------ATDPR-----QLLSAAD-DTVRELGGEFLP-RRLD-RAS-LETVAALMVD 270
                   45788888888888999**************99..776555......33322.....2333333.667788889998.8888.999.********** PP

                   HH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2 100 GklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   G++ p+++rvf +e+ aeA++++e+g++ GK+Vl
    KIR61376.1 271 GTVDPHITRVFAFEQSAEAVAAVETGHTAGKLVL 304
                   *********************************8 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   1.6e-12   9.8e-09       3      79 ..     158     230 ..     156     235 .. 0.91

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.6e-12
                 HHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCE CS
  ADH_zinc_N   3 GlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvGsgatleaalkll 79 
                 G+++ qlA+a G +vi++ s++ k++ a+ lG+++v  +  a d+  ++++l  + gvd  ++ vG g++l++  +l+
  KIR61376.1 158 GQITAQLARARGLTVIGTGSDS-KRAGAEALGVTFVSYT--AgDVPGQVRQLA-PSGVDGLIDLVG-GDALRSVAALA 230
                 99****************9988.68************99..55**********.99**********.99998877665 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   4.6e-12   2.8e-08       2      63 ..      29      93 ..      28     105 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 4.6e-12
                TEEEEEEEEEEE-HHHHHHHTTS...TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-S CS
       ADH_N  2 gevlikvkaagiCgsDlhilkgg...kelevklplilGHEivGeveevgpevkklkvGdrVvvep 63
                gevli+v++ag+ + D  + +g+    + + ++p+++G E++G v ++g +v++l vGd V+  +
  KIR61376.1 29 GEVLIRVRTAGVARLDPLLRSGHvraLNGHLPFPQVMGMEAAGDVLATGADVTDLVVGDAVFGFA 93
                69***************99999988888999******************************8755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 2011.03
//
Query:       KIR61377.1  [L=248]
Description: aminoglycoside phosphotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-19   69.7   3.9    4.4e-19   69.4   3.9    1.1  1  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   3.9   2.4e-23   4.4e-19      20     229 ..      17     204 ..       8     215 .. 0.84

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 2.4e-23
                 T.--EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS.HHHHHHHHHHHHHHHHHHCCHHCH..-STTTB CS
         APH  20 a.gryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr.klsaaqlpellealgeflaalhqvd.paalpl 115
                 + g+++l++ +++   ++i  ev+ + l   a+vp+P+vl+       +  +++++  +pg++l r       +p++++a+g+++++lhq++ p+  + 
  KIR61377.1  17 RvGDVFLKVDADQ---ARIDVEVEAMSL---APVPTPAVLW-------RKPPVLAVAALPGTTLGRlGGPSTGSPAAWAAAGATIRKLHQAPlPPLPGR 102
                 4467777777777...777778888777...889*******.......6669***************767889******************98887777 PP

                 -SHHCHTCCHHHHHHCHHHCCCGCCTCC.HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCHHHCS CS
         APH 116 adflaqdlellrqlesatarllaselld.lleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavllrswt 213
                 a+++   ++l++ l++++  l+ s +l  +l  + +qv++a  + +     + ++HgDl   ++ vd  +++vtG+iD+  ag g++lyDla++     
  KIR61377.1 103 AGRS--VVALAAELDDECELLVTSGVLAaDLVTRNRQVAEAAFRPWT----PAFTHGDLQIAHVFVD--GDEVTGIIDWSEAGQGDALYDLATFT-L-- 190
                 7777..89********************8777788889999999999....9***************..9**********************998.5.. PP

                 CHCCCHCHHHHHHHHC CS
         APH 214 seldpeflaallraye 229
                    ++e l++ +++y+
  KIR61377.1 191 --GHEEHLDDVIAGYG 204
                 ..34444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1893.85
//
Query:       KIR61378.1  [L=366]
Description: cellulose-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-31  108.2  13.4    4.1e-31  107.3  13.4    1.5  1  CBM_2         Cellulose binding domain
  ------ inclusion threshold ------
      0.064   12.9   0.2      0.064   12.9   0.2    2.2  2  Reprolysin_4  Metallo-peptidase family M12B Reprolysin-like
       0.12   12.9   0.4       0.48   10.9   0.2    2.0  2  Reprolysin_3  Metallo-peptidase family M12B Reprolysin-like
       0.39    9.0   3.1       0.38    9.0   0.5    1.9  2  Peptidase_M6  Immune inhibitor A peptidase M6


Domain annotation for each model (and alignments):
>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3  13.4   9.2e-35   4.1e-31       1     101 []      36     135 ..      36     135 .. 0.98

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 9.2e-35
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTE CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGa 99 
                 ++++y++ s+W++Gf a+vtv+N g+++ +gWt++w++ +gq vtq+Wnatv+qsG +vta +vs+N+++a+G+++sfGf+gs+tg n+ ptsft+n +
  KIR61378.1  36 CRVSYTISSQWQGGFGANVTVTNLGDPV-DGWTLRWSFASGQAVTQAWNATVTQSGAAVTAVSVSHNASLATGATTSFGFNGSWTGANPVPTSFTLNNT 133
                 899**********************976.9********************************************************************* PP

                 E- CS
       CBM_2 100 aC 101
                 aC
  KIR61378.1 134 AC 135
                 99 PP

>> Reprolysin_4  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.21   9.4e+02      15      36 ..      68      89 ..      53     109 .. 0.75
   2 ?   12.9   0.2   1.4e-05     0.064     108     163 ..     283     339 ..     248     359 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.21
  Reprolysin_4 15 yvaelgsvdevraainalvtvl 36
                  +  ++ s ++v +a+na+vt  
    KIR61378.1 68 LRWSFASGQAVTQAWNATVTQS 89
                  4556678888888999998864 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.4e-05
  Reprolysin_4 108 vgvawvgalclsarqnkkasgvaasrdeydi.fAHEiGHtfGaaHdlsdegeglssk 163
                   +g a  g + ls ++  +a g+    + +   + HEiGH +G+  + s +g ++s +
    KIR61378.1 283 GGGASTGWVVLSGHDADGAAGINGPMNRWYGgMVHEIGHGLGLPDSTSTDGTPMSGS 339
                   4444445555555666666666666667754599*****************999765 PP

>> Reprolysin_3  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.1     5e+03       4      26 ..     194     216 ..     192     243 .. 0.69
   2 ?   10.9   0.2   0.00011      0.48      73     121 ..     277     325 ..     248     326 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.1
  Reprolysin_3   4 iaalvnranqiyerdlgirlqlv 26 
                   ia +v +a   y+++lg ++ l 
    KIR61378.1 194 IANVVREAQRYYKQELGKTFTLN 216
                   67788888888888888666666 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00011
  Reprolysin_3  73 rdesgvgGlAyvgsvcnsskkagvnsgssvlgkvgadtvaHEiGHnfga 121
                   ++ +++gG A  g+v  s++ a  ++g ++  +  +  + HEiGH +g+
    KIR61378.1 277 EEPGQSGGGASTGWVVLSGHDADGAAGINGPMNRWYGGMVHEIGHGLGL 325
                   445899999**********99988888866666667889*******997 PP

>> Peptidase_M6  Immune inhibitor A peptidase M6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1     0.051   2.3e+02      66     106 ..     197     237 ..     186     258 .. 0.81
   2 ?    9.0   0.5   8.5e-05      0.38     221     249 ..     307     333 ..     296     343 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.051
  Peptidase_M6  66 nvkslkqyyekqsggsysvdGevadWlkvpknaaryGsnss 106
                    v   ++yy+++ g  ++++  v++ ++ +++   y + ++
    KIR61378.1 197 VVREAQRYYKQELGKTFTLNNPVVEVVTGEHDSNWYINTNC 237
                   4667789******************9999999888866544 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 8.5e-05
  Peptidase_M6 221 PedgavGvfaheyGhDLGLPDeyDtkytG 249
                   P +   G + he Gh LGLPD   t   G
    KIR61378.1 307 PMNRWYGGMVHEIGHGLGLPDSTST--DG 333
                   666777999************9888..34 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2388.26
//
Query:       KIR61379.1  [L=432]
Description: sugar ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-33  116.9   6.9    1.9e-33  116.5   6.9    1.1  1  SBP_bac_8  Bacterial extracellular solute-binding protein
      5e-28   99.0  11.6    9.5e-28   98.1  11.6    1.4  1  SBP_bac_1  Bacterial extracellular solute-binding protein
    0.00036   20.0   0.1       0.12   11.8   0.0    2.3  2  SBP_bac_6  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   6.9   3.2e-37   1.9e-33       2     279 ..      68     374 ..      68     377 .. 0.84

  Alignments for each domain:
  == domain 1  score: 116.5 bits;  conditional E-value: 3.2e-37
                 HHHHHHHH-TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GG.GSTTHHH...-HH.HHHTT--TS.----EEEEEEE- CS
   SBP_bac_8   2 lakefekktgvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladls.dldnldd...ltd.alaavgydgklygvPyasetpy 95 
                 l+++++++++ kv+++ ++ +d+++k+ aa+ +g +pd  ++ a+  ++++++++gl++d+s  +d l     +++  laa ++dg    +P++   + 
  KIR61379.1  68 LVEAYNASHKNKVKLTVVPNDDYVAKVGAAAGSGGLPD--LFAADIVYVPNWVKQGLFQDISaNIDGLGFkdsINKgHLAAGTVDGRKHVLPFVLDLS- 163
                 699*******9999999999*********999999996..7899999***************5335444444565567777799************85. PP

                 EEEEEHHHHHHS......---BHHHHHHHHHHHH..HH-SEGG---G.......GGGGGTHH..ETTEE---H.......HHH.HHHHHHHHHHHHTT- CS
   SBP_bac_8  96 vliynkdlleka.....edpktwdellaaakklk..gkfglpdpasg.......wlqaalla..kdgksldddg.....gkdglkealellkklkdngk 173
                 +l++nk l+ +a     + p+t+de+ aaak+++  gk   +  a+g       ++ ++  +   +g+ l++dg      +d+  ++   +++l + g 
  KIR61379.1 164 MLFWNKQLFRDAgldpeKAPATLDEYAAAAKAVQalGKKDVYGTAAGlncggclVFTWFPSIwaGGGEVLSEDGteaklADDTAQKVYGTWRELWKSGA 262
                 *********999999999***********9999666777555555555466777445554447555555688887766667777999999999999999 PP

                 EE.....-S..--SSTTTTTSBSEEEE-TTHHHHHH-TTTSEEEE.--..S--..EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH--- CS
   SBP_bac_8 174 ty.....dtgadavsefanGevaftingswdiaaaqkagkklgai.vp..kqg..sfaggkglavpknaknedlaAldFlkwltspenqaalaektgyi 262
                 ++     +tg++++++f++G++  ++++   + + +   +++g++ +p  + g  +f+gg+gl v+k++k++++ A+ Fl+w++s+++q +   k   +
  KIR61379.1 263 VLpasagETGPTWTAAFTEGKIGLMFYPATLLSSTK---FDVGVAgIPgpNGGasTFVGGDGLGVSKDSKKAAQ-AWNFLNWMMSEDAQVEVLAKNKDV 357
                 8889999999*****************988777755...69999999864333779*****************9.************************ PP

                 BS-S-TTTHHHHHH-HH CS
   SBP_bac_8 263 pvnksaalspevkkdpa 279
                  +++++a +++ ++dp 
  KIR61379.1 358 VSRDDLAKNKYAAEDPR 374
                 **********9999986 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1  11.6   1.6e-31   9.5e-28      11     314 ..      66     347 ..      59     348 .. 0.83

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 1.6e-31
                 HHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE.EE.. CS
   SBP_bac_1  11 qalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkilds.kv.. 106
                 + lv +a+++ h   kV+++ v+ +++  k+ +a ++G  p D++a d  +++ ++k+gl++++++ ++    +          +s  ++ l++ +v  
  KIR61379.1  66 KLLV-EAYNASH-KNKVKLTVVPNDDYVAKVGAAAGSGGLP-DLFAADIVYVPNWVKQGLFQDISANIDGLGFK----------DSINKGHLAAgTVdg 151
                 5567.99***87.99************************9*.************************99987432..........334444444447789 PP

                 .ES.EEEE.EEEEEEEETTTHHCTTGGG...SHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHS..HH CS
   SBP_bac_1 107 .ly.vPly.aargliYNkdlfekagldp...pwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvt..aa 197
                     +P+    ++l++Nk+lf +agldp   p t de ++aak + + gkk+++g + g + g   +f+++ + ++gg ++ ++    d +e++   ++
  KIR61379.1 152 rKHvLPFVlDLSMLFWNKQLFRDAGLDPekaPATLDEYAAAAKAVQALGKKDVYGTAAGLNCGGCLVFTWFPSIWAGGGEVLSE----DGTEAKLadDT 246
                 9556****66******************************************99999999999999999999999997776666....55555552233 PP

                 HHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCS CS
   SBP_bac_1 198 tylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgsk 296
                 ++ v+  + ++++ +   + +++++g+  +a+f++G+++++                +  a+  ++ k+++gva +P+  gg+ + +g++gl+++k+sk
  KIR61379.1 247 AQKVYGTWRELWKSGAVLPASAGETGPTWTAAFTEGKIGLM----------------FYPATLLSSTKFDVGVAGIPGPNGGASTFVGGDGLGVSKDSK 329
                 34444444445555777777777777777777778888885................56689999************999999999************* PP

                 THHHHHHHHHHHTSHHHH CS
   SBP_bac_1 297 npeaAkkFldfllspeaq 314
                 + ++A+ Fl+++ s++aq
  KIR61379.1 330 KAAQAWNFLNWMMSEDAQ 347
                 ****************99 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0012       7.1       3      71 ..     103     175 ..     101     184 .. 0.72
   2 !   11.8   0.0   1.9e-05      0.12     176     219 ..     316     360 ..     309     380 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0012
   SBP_bac_6   3 lpdlilsfdkdflekfieeglfqpld........panlpnvnkdfaeeglkdpdgkyypygvgplvlavnkdrlkgr 71 
                 lpdl+   d  ++ +++++glfq++         ++++++ +    ++g+ d++++  p+      l  nk+ + + 
  KIR61379.1 103 LPDLFA-ADIVYVPNWVKQGLFQDISanidglgfKDSINKGH---LAAGTVDGRKHVLPFVLDLSMLFWNKQLFRDA 175
                 799*99.****************9976655555522222222...25888888888888887777777777777665 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 1.9e-05
   SBP_bac_6 176 lvspifmlvkkg.kkkelakafidfllspevq.ailakaggvfPvv 219
                 +v  + + v k+ kk+++a+ f+++++s+++q ++lak+   + + 
  KIR61379.1 316 FVGGDGLGVSKDsKKAAQAWNFLNWMMSEDAQvEVLAKNKD-VVSR 360
                 67789999**********************87578888876.4443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3405.79
//
Query:       KIR61380.1  [L=305]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-20   73.1  12.2    2.4e-20   73.1  12.2    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   5.5     0.039     7e+02      27      63 ..      30     104 ..      13     111 .. 0.74
   2 !   73.1  12.2   1.3e-24   2.4e-20       4     176 ..     105     296 ..     101     301 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.039
  BPD_transp_1  27 llslPsfv.....laillvlvf.................................vilsilghlilpviilllls 63 
                   l+++P+ v     +a++l+lvf                                 ++l  l++++l+ ++ll+l 
    KIR61380.1  30 LYATPTAVfvialFAVPLLLVFrmslskwpllagdqgvnapdnfvkavehrffadSVLFTLKYTALATVLLLALA 104
                   456666663333444445556688888889999999999999999999999988877778888888866666655 PP

  == domain 2  score: 73.1 bits;  conditional E-value: 1.3e-24
  BPD_transp_1   4 lGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvf.................vilsilghlilpviillllsaapyvrlirraalrslpk 81 
                   lG  +a  ++ ++++++llr  + ++++l     a ll++vf                 ++l++ +++ l+  +l+++ +a++ ++++  +l+ +p 
    KIR61380.1 105 LG--LAllVQESSRWNNLLRASFLIPSALGLAS-ASLLFYVFyspyasplspvmerlglSFLDSPTSALLSTTFLIVWRYAGFYMVLMLVGLQGIPA 198
                   33..34448899999999999999999998887.99999999******************************************************* PP

  BPD_transp_1  82 dlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis...nggvlalviavlllnlvadil 175
                   + +eaar++Gasrwq+frkv+lP++ p+++ + +l ++g+l ++   ++l+ +++ +++++ ++l+y++++      g+++a+ ++vl+ ++++++l
    KIR61380.1 199 EVYEAARTDGASRWQTFRKVTLPLLRPTLALTTVLCVTGSLLAFEQFYILTKGGPDNSTITVVQLIYMVAFQGqndLGVAAAISVIVLAALVCINAL 295
                   ***************************************************9999***************988999899999999999999998888 PP

  BPD_transp_1 176 q 176
                   q
    KIR61380.1 296 Q 296
                   7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2204.97
//
Query:       KIR61381.1  [L=1058]
Description: glycoside hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-26   92.2   2.9    5.7e-26   91.5   2.9    1.3  1  Glyco_hydro_43  Glycosyl hydrolases family 43
    1.4e-10   41.3  26.0    5.5e-07   29.7   7.8    3.9  4  F5_F8_type_C    F5/8 type C domain
    2.5e-07   30.3   1.2    2.5e-07   30.3   1.2    2.8  3  Big_4           Bacterial Ig-like domain (group 4)
  ------ inclusion threshold ------
       0.26   11.0   0.7       0.59    9.8   0.7    1.5  1  PsbQ            Oxygen evolving enhancer protein 3 (PsbQ)


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   2.9   1.3e-29   5.7e-26      22     284 ..      91     365 ..      85     369 .. 0.83

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 1.3e-29
                     EEEEEEEBTEE........SEEEEEEESSSS..SCEEEEECEESTTTCSTTTEECTEEEEEE.EETTEEEEEEE...EEETTCCCSEEEEEEESS CS
  Glyco_hydro_43  22 yYlvtstfewf........pglrifhSkdLv..nWkqvgrvlerrsqlsmkgknasWAPeis.khdgkyylyyt...atkkgeakqgifvvtads 102
                      Y++t+++e+         +g+   + +d    +W+   + ++ ++ +s++   + +A ++    dg+yy y++    ++ +++k +i+v+++ds
      KIR61381.1  91 LYVYTGHDEAGpstndfimNGWGALRTTDVAsgQWTHFPSLMRPEQVFSWATPGRAYAGQVVrGVDGRYYWYVPiheRDSPASDKFAIGVAVSDS 185
                     66666666665666666777888888888753379999999999999999999999***986379*********8665666666777******** PP

                     TTS--EECEESSCS........TSSECEEEEEEETT...SEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEEEEEEEEECGCCTCTTBBEEEEEE CS
  Glyco_hydro_43 103 peGpwsdpiklkts........gssgiDpslfeddd...GkkYlvwgqwdkreghseiylaeldddtlklkgektklikagtelkglkvtEGPhl 186
                     p+Gpw+d+   ++             iDp++++d +    + Y+ wg+      ++++ + e+ +d+++  g++  ++++g     + + EG + 
      KIR61381.1 186 PTGPWTDHAGGPIIsqrvptanTIHNIDPTILIDGEaphQRVYVWWGS------FGQLRMLEFGQDMKTPIGTP--RTVTGL----TGFFEGAWA 268
                     *******9887666689999888899*********9776778888888......6779****************..677777....6899***** PP

                     EEETTEEEEEEE.........ESTSSTTEEEEEEEESSTTSGGEEECTCCSEE.TBTTSTSEEEEEEEEEE-TTSSEEEEEEEESCCTTCCGTTS CS
  Glyco_hydro_43 187 ykrdgyyYLlaa.........eggtgseyavvvarsksllgPyewkkknpiltsrspeepiqgpGHaslvetpdgewyivyhagrpegrglytlg 272
                     ++r+g+yYL +a         +   +++++  +++++s+ gP  w+++ ++l+        + + H +++e  dg+wy++yh+ +    g+  + 
      KIR61381.1 269 FERNGTYYLAYAgnnagptspCTPANYHACLAYGTASSPEGP--WTYRGTFLRP-----VSSTTSHPGVLEF-DGTWYLAYHTADA--VGGGHFR 353
                     ************999777655555555567777*********..8999999996.....477889******9.999*********9..99999** PP

                     SEEEEEEEEEET CS
  Glyco_hydro_43 273 Retllqrvewka 284
                     R++++++vew++
      KIR61381.1 354 RSVAIDPVEWDD 365
                     **********95 PP

>> F5_F8_type_C  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   5.0   1.9e-07   0.00086      25     123 ..     427     532 ..     394     535 .. 0.80
   2 ?   -1.6   0.1      0.61   2.7e+03      98     114 ..     705     720 ..     669     733 .. 0.60
   3 ?   -2.0   0.0      0.84   3.8e+03      68      90 ..     748     768 ..     740     787 .. 0.69
   4 !   29.7   7.8   1.2e-10   5.5e-07       5     119 ..     814     940 ..     809     946 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.9e-07
                   SEEESSSSTT..EEEEEEEEEEEEEEEEEEEECSSTT......SSEEEEEEEEEESSSS.SEEEEEE.ECEEESSSSSSSEEEEEEEEEEEEEEEEE CS
  F5_F8_type_C  25 aWsssssddk..qwlqvdLgkpkkidgvvtqgrqdgg......nayvksykiqvsddge.tWttvkd.ekvpgnsdnstpvtntfdppvkaryvrlt 111
                    W +++++++  qw+q    +p++i+g ++ + +d         a + +++iq+   g+ +W +v + + +p++++  + ++ tfd pv++  vr +
    KIR61381.1 427 MWGTWTGNNPpqQWVQYTWDQPMRISGSQIEFWNDQPqgtgagVAAPARWRIQYWRSGTgQWADVPNpSGYPTGTQ--GFQNTTFD-PVTTTQVRAV 520
                   799888888888****************9998888766677789999**********977*******433344444..57777888.********99 PP

                   EEEEESSSSSEE CS
  F5_F8_type_C 112 ptswnggngial 123
                     ++++g  ++ 
    KIR61381.1 521 FDASTNGSTYSA 532
                   999777766665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.61
                   EEEEEEEEEEEEEEEEE CS
  F5_F8_type_C  98 tfdppvkaryvrltpts 114
                   ++ +p   r vr+ +t+
    KIR61381.1 705 NV-SPQAVRAVRIDATT 720
                   22.36667778887777 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.84
                   EEEESS.SSSEEEEEEECEEESSS CS
  F5_F8_type_C  68 iqvsdd.getWttvkdekvpgnsd 90 
                   i++  d g  Wtt+ +    g  d
    KIR61381.1 748 IEYAIDsG-AWTTYTG--AVGPPD 768
                   78888845.8999988..433333 PP

  == domain 4  score: 29.7 bits;  conditional E-value: 1.2e-10
                   SSCSSTTTGGGGGGSSSTTS.......SEEESSSSTT..EEEEEEEEEEEEEEEEEEEECSSTT......SSEEEEEEEEEESS.SSSEEEEEEECE CS
  F5_F8_type_C   5 sseesgewpaaaaldGnknt.......aWsssssddk..qwlqvdLgkpkkidgvvtqgrqdgg......nayvksykiqvsdd.getWttvkdekv 85 
                   s  ++++w+  aal+ + +         W ++s++ +  qw+q d  +p +i+g  +++ +d++       a +  + +q+ d+ g+ W++v + + 
    KIR61381.1 814 S--YTAGWNSVAALNDDADPtnpgqaqLWGTWSGTRPasQWVQYDWARPVRITGTALKFWRDSEqgtgngVAQPDGWVLQYWDEaGSAWRDVTGASA 908
                   2..468996666666433223355667777777777777*******************99888889988889999*********9*********555 PP

                   EESSSSSSSEEEEEE.EEEEEEEEEEEEEEEESSS CS
  F5_F8_type_C  86 pgnsdnstpvtntfd.ppvkaryvrltptswnggn 119
                    g+s+   +  nt++  pv++  vr t+ ++ +g 
    KIR61381.1 909 YGTST---TAFNTVSfDPVTTSRVRATIRANGNGD 940
                   66666...555555555***********9954444 PP

>> Big_4  Bacterial Ig-like domain (group 4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.6   7.4e+03      42      55 ..     323     336 ..     322     336 .. 0.87
   2 ?   -3.8   0.2       2.6   1.2e+04      33      41 ..     360     367 ..     360     369 .. 0.76
   3 !   30.3   1.2   5.5e-11   2.5e-07       5      59 .]     553     605 ..     549     605 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.6
       Big_4  42 edtskpGtytveGt 55 
                 + ts pG+ ++ Gt
  KIR61381.1 323 STTSHPGVLEFDGT 336
                 56899*******98 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.6
       Big_4  33 kVtWdkipa 41 
                 +V Wd++ +
  KIR61381.1 360 PVEWDDT-Q 367
                 69***87.3 PP

  == domain 3  score: 30.3 bits;  conditional E-value: 5.5e-11
       Big_4   5 evtvtvgtspnLPttVeatysdgseeevkVtWdkipaedtskpGtytveGtvegy 59 
                  vtv+vg++ +LP+tV++ +  ++ + v+V Wd  ++ ++++pGt++v+Gtv gy
  KIR61381.1 553 AVTVEVGET-DLPDTVAVPFGAETLR-VPVFWDPVTPQQVAAPGTFSVAGTVLGY 605
                 699*****9.**********999995.******777****************887 PP

>> PsbQ  Oxygen evolving enhancer protein 3 (PsbQ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.7   0.00013      0.59      25      56 ..      18      49 ..       3      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00013
        PsbQ 25 eeesRRavlglaaaalaagslaaaalaeaaea 56
                +   RRav+++a+a+l+ag +a +a+a+aae+
  KIR61381.1 18 AGRLRRAVAAAAVAGLVAGGVAGPAPAHAAEP 49
                5567************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1058 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 6582.73
//
Query:       KIR61382.1  [L=209]
Description: hypothetical protein TK50_27415 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1551.18
//
Query:       KIR61383.1  [L=1129]
Description: glycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-98  328.1   0.0    2.2e-87  293.8   0.0    2.4  2  Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
    9.7e-33  113.5   3.1    9.7e-33  113.5   3.1    2.6  2  Laminin_G_3      Concanavalin A-like lectin/glucanases superf


Domain annotation for each model (and alignments):
>> Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   6.1e-12   5.5e-08       1      97 [.      72     167 ..      72     176 .. 0.94
   2 !  293.8   0.0   2.4e-91   2.2e-87      99     518 ..     418     866 ..     412     867 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 6.1e-12
                      CEEE-SSHHHHHHHHHHHCHHHCHHHHHHHHHHHHTT---SS-..--SGGG----TTT-TTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH CS
  Glyco_hydro_127   1 dVrltdsffldrqetvreyllaldpdrlletfrkeaglpskae..aaggwedektgeelrdgdlgkwleavalllastkdkelekrldrlvdel 92 
                      dV+l +++f+++++++++yl + d  r l  f+++ag p+ a     ggwe    g  l ++  g++l a+a+ +a  +++ ++ +ld +vdel
       KIR61383.1  72 DVTLGSGLFQEKRDRMKNYLRQFDERRFLVLFNNQAGRPNPAGvsVPGGWE---DGGLLSGHWAGHFLTALAQGYADLGEPIFKSKLDWMVDEL 162
                      79**********************************99988754489****...99************************************** PP

                      HHHCH CS
  Glyco_hydro_127  93 akaQq 97 
                      a++Q+
       KIR61383.1 163 AACQA 167
                      ****7 PP

  == domain 2  score: 293.8 bits;  conditional E-value: 2.4e-91
                      SS-B-GCCTHH.............SSEETTEESH----HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCS-CCHHHHHTTT.... CS
  Glyco_hydro_127  99 dGYlsavtelk.............neakkeawapdshelYnlgkliegavayyqatgkeklldvatrladyleevleklgdeqlqkalvp.... 175
                       GYl+a++e               + a +++wap    +Y+ +k++ g++++y +t+++k+ldv++r+a+++ + + ++gd +   ++ p    
       KIR61383.1 418 PGYLGAIPEDAvlrlgpprwavygSNADTNTWAP----WYTQHKIMRGLLDAYYHTDNRKALDVVVRMAEWA-HLALTVGDRNHPAYGGPitrd 506
                      69****999999999***99999988999*****....**********************************.555555555555555444555 PP

                      ............HHCTHHHHHHHHHHHHT-CHHHHHHHHCCHHCCHCC............T-HCTTT-SSTCGCHHCHHCCHHHHHHHHHHHHH CS
  Glyco_hydro_127 176 ............ehggieealvklyelTgdkrYldlAkrfidergldp............eklaykqdelpvrhqntaigkavRatylysglad 245
                                  e+gg++e++ ++y+lTgd+r+l +Ak f++++ l               +++ ++ +   +h+n ++++++       g+ +
       KIR61383.1 507 nlnymwdlyiagETGGANEVFPEIYALTGDARHLVTAKLFDNRESLFGacvanrdilvttPQTNPGRRRPDRLHANSHVPQFI-------GYLR 593
                      555666777788****************************99887665689999999987778888999999***********.......**** PP

                      HHHHCTTHCCHHHHHHHHHHHHHHCB-TTS-B-BCEEE.....CE--STT--HCCCH-..-BHHHHHHHHHHHHHHHHCH--CHHHHHHHHHHH CS
  Glyco_hydro_127 246 vyeetgddkllkaaerlwdnvvtkkmyvtGGigakhdg.....EaFgppyelpnrlay..aEtCasinmlklarrlleltpdakyadvlEraly 332
                      vye +g+ ++ +aa++++  vv ++my+ GGig ++ g     E F++  +++n+ a+  aEtC+++n+lklar+l+ +++d++y+d++Er l+
       KIR61383.1 594 VYEHSGEADYFRAAKNFYGMVVPHRMYAHGGIGGNYPGsnnntELFQNRGNIANSIAQggAETCTTYNLLKLARNLFLHEQDPAYLDYYERGLL 687
                      ********************************99987788888*************************************************** PP

                      HTTGGGB-TTT....S-BBSB--STTTBS--SSSC-BTTTTT-CHHHHHHHHCCGGGGGSEEEETT..EEEE-S-SSEEEEECGCT-EEEEEEE CS
  Glyco_hydro_127 333 Nsilagvsldg....ksffYvnplesgskklrklystkwdscaCCppnglrtvaklgeyiYaesdd..tvyvnLyiaselklklkgkeveleqe 420
                      N+il++ + ++     +++Y+ pl +g  +   +y +      CC ++g+++++k++e+iY++s d  t++vnLy++s+l++ +kg  + ++q 
       KIR61383.1 688 NQILGSRADTTsvadPQVTYFQPLTPGTVR---SYGN---IGTCCGGTGFENHTKYQETIYFKSADggTLWVNLYASSTLDWAEKG--FVVTQS 773
                      ****9754333243389*******999999...4444...459*********************6667******************..****** PP

                      E-TTSSSEEEEEEEETT--CEEEEEEE-TT-S-.EEEEETTEEE--S-STTEEEEEEEE--TT-EEEEEE---EEEEE--TT-CCGTTEEEEEE CS
  Glyco_hydro_127 421 tnyPwegkvkltvktqkkaeftlklRiPgWaaa.atltvnGkkvvvkkksdgYleiereWkkgdkvelelpmsvrleeanpkvrddankvavlr 513
                      t+yP e++ +l+v  +    + lklR+P+Wa + + + vnG +++v++ +++Y++++r+W+ gd+ve+ +p s+r+e+a     d ++++++  
       KIR61383.1 774 TAYPREDRSTLVV--DGSGPLVLKLRVPDWARKgFSVAVNGVAQQVDAAPGSYATVNRSWRPGDRVEIRMPFSIRIERA----LDRPDTQSIFW 861
                      ***********99..9999***********7655*********************************************....*********** PP

                      TTEEE CS
  Glyco_hydro_127 514 GPlvl 518
                      GPl+l
       KIR61383.1 862 GPLLL 866
                      **987 PP

>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   3.1   1.1e-36   9.7e-33       3     152 .]     206     362 ..     204     362 .. 0.85
   2 ?   -1.3   0.2      0.23   2.1e+03      76      91 ..     478     493 ..     438     501 .. 0.76

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 1.1e-36
  Laminin_G_3   3 gsdyvtlpdaslp.tssfTvsaWvkpdslpsaaqiiissssdgrgfelgl....dgsg....rlrfsvnagngaeesvtsgasvpageWtHvavtydg 91 
                   ++yvtlp+  ++  ++fT++aWv++  ++s+++++   ++++++ +++l     + +    r++++v+++ g+e++++++a++p+++W+H+avt+  
   KIR61383.1 206 RAQYVTLPQEAISqLTDFTIAAWVNLAGTGSWSRLFD--FGQNTTVNMFLtpraGT-TgnvpRFAITVGGS-GGEQRIDGTAALPTNQWVHLAVTLTQ 299
                  579******888669*******************999..76664555554322222.24677888888877.5899********************** PP

  Laminin_G_3  92 gtlrlYvNGvevgsatltgg..llsatsgplviGrdpggddpfdGlidevriynralsaaeIa 152
                  +t +lYvNG+++g++t+++   ++ ++ g+ +iGr++ gd+++d+++de++i++rals++e++
   KIR61383.1 300 NTGTLYVNGQQAGRNTAMTLspANLGNPGNRWIGRSQYGDPYLDATVDEFQIFDRALSQSEVQ 362
                  ***************99998555558888899*****99**********************96 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.23
  Laminin_G_3  76 svpageWtHvavtydg 91 
                   v+  eW H+a t+ +
   KIR61383.1 478 VVRMAEWAHLALTVGD 493
                  456689******9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 7581.75
//
Query:       KIR61384.1  [L=342]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-27   96.2   0.2    3.8e-27   95.6   0.2    1.3  1  Peripla_BP_3  Periplasmic binding protein-like domain
    4.5e-19   68.9   0.0    5.8e-19   68.6   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    1.8e-16   60.5   0.0    5.3e-16   59.0   0.0    1.7  2  Peripla_BP_4  Periplasmic binding protein domain
    1.9e-15   56.4   0.3    4.2e-15   55.2   0.3    1.6  1  LacI          Bacterial regulatory proteins, lacI family
     0.0046   16.7   0.2      0.013   15.1   0.2    1.7  2  Peripla_BP_6  Periplasmic binding protein
      0.008   16.5   0.4      0.023   15.0   0.4    1.8  1  HTH_31        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.036   14.1   0.0       0.07   13.2   0.0    1.4  1  HTH_3         Helix-turn-helix
        0.1   12.8   0.1       0.24   11.6   0.1    1.7  1  HTH_17        Helix-turn-helix domain
       0.12   12.4   0.0       0.22   11.5   0.0    1.4  1  DUF5635       Family of unknown function (DUF5635)


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.2   1.9e-30   3.8e-27       1     166 []     178     338 ..     178     338 .. 0.84

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 1.9e-30
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-.EEEEE-S-SS-SSHHHHH......HHHHHCC-S..EEEEESSCCHHHHHHHHH CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglp.lnetvvaaddpaaaaaaraalll.qalklaalP..tAviaasDelAlgvlqal 93 
                   vehL++ G r+ia i+  gd   +a+++r +g++ +l+++gl+ + ++++ +  ++a ++a+a+  + ++     +P  +++++ sD++A gvl+ l
    KIR61384.1 178 VEHLLACGRRNIAHIT--GDAVYRAARDRAEGAAATLAAAGLTmVGDRPYFGSWDEAWGRAAARM-VvER-----HPevDGIFCGSDQIARGVLETL 266
                   79**************..9999*********************7555555444444444444443.3233.....45337***************** PP

                   CCTT--TTTTEEEEBSS--SCC.CSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  94 reaglrvPedlsvigfddsela.alssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   r+ g  vP   svigfd+ e++ a+s+P lT+++++l+ lG  a + l + + g   p+++ + p +lv ReS+
    KIR61384.1 267 RDLGRDVPGTTSVIGFDNWEAIaAHSRPRLTSIDMNLKHLGSVAGQRLFAAI-GGAVPTSE-QFPGRLVMRESS 338
                   ******************99999*****************************.55555555.56899*****96 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   2.9e-22   5.8e-19       2     268 ..      71     325 ..      70     336 .. 0.87

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 2.9e-22
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GG.HHHHHHHHHHT-EEEEESS--B-TTTS- CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdts.fdditakaesgipvialedaidapdgvP 96 
                    ++gl+  +l+  f+  ++ g++ a  +  v v+l  a +++  + + ++ l+++++dgli+ +s t+  + +       +pv+ + d + +p ++ 
    KIR61384.1  71 GTVGLLTSDLEGRFSIPILMGVEDAFGAGQVSVFLCDARGDAIREkHHVQALLSRRVDGLIVVGSRTDpRPPLAGNI--PVPVVYVYDPSADPADIS 165
                   689***********************************9999999899************99966666255554444..56************8887 PP

                   EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHH CS
  Peripla_BP_1  97 cvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaal 193
                       d+   g  + ++L+a g ++ ia + g++   +a+ r++G  a+la+aGl +  +    gs d   ++ a+  + e+hPe+d i +++d++a 
    KIR61384.1 166 -LTVDNVGGGRLAVEHLLACGRRN-IAHITGDAVYRAARDRAEGAAATLAAAGLTMVGDRPYFGSWDEAWGRAAARMVVERHPEVDGIFCGSDQIAR 260
                   .8899*******************.*****************************888888999********************************** PP

                   HHHHHHHHTT..--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-SEEEE--E CS
  Peripla_BP_1 194 GavlalkkeGr.lkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkinkerehprv 268
                   G    l+  Gr + +   v        ++d+  +a       + l++i+++++ lG  a +++   i  ++++p +
    KIR61384.1 261 GVLETLRDLGRdVPGTTSV-------IGFDNW-EA-IAAHSRPRLTSIDMNLKHLGSVAGQRLFAAI--GGAVPTS 325
                   **********877777776.......666666.22.2233678999999999999999999998888..5555554 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   2.6e-19   5.3e-16       2     218 ..      74     284 ..      73     291 .. 0.86
   2 ?   -2.4   0.0       1.4   2.7e+03      95     130 ..     294     336 ..     288     339 .. 0.77

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 2.6e-19
                   EEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EE.EEESTTGCTTT-CE CS
  Peripla_BP_4   2 gvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpV.vafdsddapsgerl 97 
                   g++ +d +  f  ++  g+e+a  +  ++v++  da++da +++  +++++++ vdg+iv     t  +p l+     +IpV v++  d   +++ +
    KIR61384.1  74 GLLTSDLEGRFSIPILMGVEDAFGAGQVSVFLC-DARGDAIREKHHVQALLSRRVDGLIVVGSR-TDPRPPLAG----NIPVpVVYVYD-PSADPAD 163
                   666677777788888899999999999999986.**************************9666.788888866....55552334444.58***** PP

                   EEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTT.TCHHHHHHHHHHHHHTTT.ECEEEESSC CS
  Peripla_BP_4  98 ayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevagan.wdaekaqqalealltanp.ldgilaand 192
                      + dn   G+l+ e l+ +      +++ ++G++  ++a++r+eg+ ++l++  g++ v++  + + wd++ ++ a+  +  ++p +dgi++ +d
    KIR61384.1 164 ISLTVDNVGGGRLAVEHLLACGR---RNIAHITGDAVYRAARDRAEGAAATLAA-AGLTMVGDRPYFGsWDEAWGRAAARMVVERHPeVDGIFCGSD 256
                   ********************998...67************************99.9******6665555***************9977********* PP

                   CHHHCHHHHHHHTTT..TSTEEEEEES- CS
  Peripla_BP_4 193 gmaegalealeaagl..agkvvvtgqDa 218
                    +a+g+le+l++ g+   g + v+g+D+
    KIR61384.1 257 QIARGVLETLRDLGRdvPGTTSVIGFDN 284
                   **************97555555****97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
                   -CEEEEEC-HHHHHHHHHHHHHHHCTTH........EEEEEET CS
  Peripla_BP_4  95 erlayvgfdneaaGelqaeylaeklggk.......kgkvvila 130
                   +rl  +  + +  G ++++ l  ++gg        +g +v+ +
    KIR61384.1 294 PRLTSIDMNLKHLGSVAGQRLFAAIGGAvptseqfPGRLVMRE 336
                   5666666777889999****99999998888788877777765 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.3   2.1e-18   4.2e-15       1      46 []      14      59 ..      14      59 .. 0.99

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 2.1e-18
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                t+ DVA+lAGVS+aT+S+ +n+++ V++ tr rV++a+e l+++Pn
  KIR61384.1 14 TLTDVAKLAGVSVATASKAINGRGEVRATTRVRVLEAAELLSFAPN 59
                89*******************************************9 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   6.8e-06     0.013      42     183 ..     100     237 ..      71     294 .. 0.71
   2 ?    0.6   0.0      0.18   3.6e+02      55      95 ..     232     274 ..     227     320 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.8e-06
                   EEEEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEEESS-HHCCTTSTTEEESS--HHHHHHHHHHHHHHHTTSCEE CS
  Peripla_BP_6  42 kielverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvigpagltgekcspyvfslgpsysaqasalveylakelggkkv 138
                   ++ +  +D  +d+ r    ++ l++ + vd+l+ + +s  +    +++ +  vpv+++    + ++ p  +sl+ ++   ++ +ve+l+   g++++
    KIR61384.1 100 QVSVFLCDARGDAIREKHHVQALLS-RRVDGLIVV-GSR-TDPRPPLAGNIPVPVVYV---YDPSADPADISLTVDNVGGGRLAVEHLLA-CGRRNI 189
                   6777778888888888888888888.888888885.665.456667777778888886...4456778889999999999999****999.7***** PP

                   EEEEES..SHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTH..HHHHHHH CS
  Peripla_BP_6 139 alvyad..yafgregiaalkaaakaaGgevvgeepvplgt..tdfsaqv 183
                   a+++ d  y + r+ +++++a ++aaG+++vg++p+  g+  + +  ++
    KIR61384.1 190 AHITGDavYRAARDRAEGAAATLAAAGLTMVGDRPYF-GSwdEAWGRAA 237
                   ****88799999********************99986.33233343333 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.18
                   HHHHHHHHHHHHCT-.-SEEEE-BSHHHHHHHHHHHHH..HT-E CS
  Peripla_BP_6  55 draaeaarrlvdqdg.vdalvgplssavaaavaevlak..dgvp 95 
                   + + +aar  v++   vd+++ + s+ +a +v+e+l++  ++vp
    KIR61384.1 232 AWGRAAARMVVERHPeVDGIFCG-SDQIARGVLETLRDlgRDVP 274
                   5567888888888556****998.89999999999998444444 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.4   1.2e-05     0.023      16      53 ..      14      50 ..      13      64 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
      HTH_31 16 sqeevAerlgvsestlsrlEqGrrgrpspavlealara 53
                ++++vA+++gvs++t s+  +Gr  +++  +  ++++a
  KIR61384.1 14 TLTDVAKLAGVSVATASKAINGRG-EVRATTRVRVLEA 50
                6789********************.7966644444444 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.5e-05      0.07      11      40 ..      14      43 ..      14      53 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.5e-05
                HHHHHHHHHTSSHHHHHHHHTTSSCSBHHH CS
       HTH_3 11 sqeeLAeklGvsrstisriEnGernPslet 40
                +++++A+++Gvs++t s+ +nG+ + + +t
  KIR61384.1 14 TLTDVAKLAGVSVATASKAINGRGEVRATT 43
                6789******************88877655 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00012      0.24       3      38 ..      14      47 ..      14      57 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
      HTH_17  3 tveEaAelLgvsrstvyrlir.rgelpaakiGrrwri 38
                t  ++A+l gvs++t+ + i+ rge +a+ +   +r+
  KIR61384.1 14 TLTDVAKLAGVSVATASKAINgRGEVRATTR---VRV 47
                778*****************98999999854...443 PP

>> DUF5635  Family of unknown function (DUF5635)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011      0.22      32      76 ..     190     234 ..     178     243 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
                 SSB-HHHHHHHHTS-HHHHHHHHHHHHH-EETTEESEEEETTEEE CS
     DUF5635  32 pFvtedtvAeaLqsseeeaaealeaaeqttvegePlitrhkdvWl 76 
                 + +t d+v +a    +e aa++l aa  t+v+++P    ++++W 
  KIR61384.1 190 AHITGDAVYRAARDRAEGAAATLAAAGLTMVGDRPYFGSWDEAWG 234
                 5789999999999*******************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2448.95
//
Query:       KIR61385.1  [L=335]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-39  134.5   0.7    4.2e-39  134.5   0.7    1.9  2  Peripla_BP_3  Periplasmic binding protein-like domain
    5.8e-23   81.7   0.0    9.4e-23   81.0   0.0    1.3  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    2.9e-18   65.4   0.5    6.3e-18   64.3   0.5    1.6  1  LacI          Bacterial regulatory proteins, lacI family
    3.1e-16   59.7   0.0    4.7e-16   59.1   0.0    1.2  1  Peripla_BP_4  Periplasmic binding protein domain
     0.0039   17.5   0.9      0.018   15.4   0.9    2.2  1  HTH_31        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.016   15.3   3.3        2.6    8.2   0.0    3.1  3  HTH_28        Helix-turn-helix domain
      0.021   14.8   0.0      0.044   13.8   0.0    1.6  1  HTH_3         Helix-turn-helix
       0.03   13.7   0.0       0.13   11.7   0.0    2.1  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
       0.14   11.9   0.0       0.39   10.5   0.0    1.7  1  HTH_38        Helix-turn-helix domain
       0.22   11.4   3.5       0.95    9.3   0.0    2.8  3  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1         1   1.9e+03      10      10 ..      62      62 ..      13     142 .. 0.57
   2 !  134.5   0.7   2.4e-42   4.2e-39       1     166 []     170     330 ..     170     330 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1
                  - CS
  Peripla_BP_3 10 r 10
                   
    KIR61385.1 62 G 62
                  2 PP

  == domain 2  score: 134.5 bits;  conditional E-value: 2.4e-42
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-.EEEEE-S-SS-SSHHHHH.......HHHHHCC-SEEEEESSCCHHHHHHHHHC CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglp.lnetvvaaddpaaaaaaraalll..qalklaalPtAviaasDelAlgvlqalr 94 
                   ++hL++lGh ++  ++  g+ + ++++er +g+r al++ g p + +t++a++  a   ++++   l  ++       tA+++asD++Algvl+al+
    KIR61385.1 170 TRHLLDLGHATVHHVA--GPADWPEATERSDGWRAALHATGRPsPYATPGAWTARA---GYAQGRGLarDR-----SVTAIFCASDQIALGVLRALH 256
                   68**************..9***********************95666666666554...444433221211.....569****************** PP

                   CTT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHH..TT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  95 eaglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldll..egekappeqvllppelveReSt 166
                   eag rvP+++sv+gfdd + a++++PplTtvrq+++elGr+ +++ll++l  +g++a+pe+vll p+lv+R+St
    KIR61385.1 257 EAGRRVPDEVSVVGFDDMPDAGYFLPPLTTVRQDFAELGRRSLDMLLARLvaAGPQAAPERVLLLPRLVVRGST 330
                   ***************************************************************8899******8 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0   5.2e-26   9.4e-23      18     258 ..      78     305 ..      63     323 .. 0.86

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 5.2e-26
                   HHHHHHHHHHHHHTEEEEE..EE-SSHHHHHHHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EEEE-HHHHHHHHHHH CS
  Peripla_BP_1  18 dlvkgitkaakehgvdvll..laageeedlakaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPcvipddtqageestqk 112
                   +l+++i+ aa+  g+ v++  l + +   +  a+d l+++ ++g+i   + + + d +a+a+ ++pv+ ++   d++  vP+v  d+   +  +t++
    KIR61385.1  78 SLLYAIEGAARSAGYFVTVagLRDLDSRSVRDAVDRLRQQSVEGIIAIAPKPVVADTLAQAADDLPVVGVGGGQDKA--VPSVQIDNAAGAGLATRH 172
                   7899**********99888446666666777****************9*****99999999999*******997777..******9988888***** PP

                   HHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-..GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHHHHHHHHHHTT.--G CS
  Peripla_BP_1 113 LiaeghkrpiallegpesaltakervqGflaalaeaGl..evkdvhvalgsndiedaaealnelleshPeidaivaindeaalGavlalkkeGrlki 207
                   L+  gh   +  ++gp+    a er +G++aal++ G+  +   +   +    + +++ ++         + ai + +d++alG  +al  +G  + 
    KIR61385.1 173 LLDLGHAT-VHHVAGPADWPEATERSDGWRAALHATGRpsPYATPGAWTARAGYAQGRGLARD-----RSVTAIFCASDQIALGVLRALHEAG-RRV 262
                   ********.*****************************6666666666666666666665554.....3455*********************.799 PP

                   GGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHH CS
  Peripla_BP_1 208 keevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqk 258
                   ++ev     svv++d +    d + +l+pl++      +lGr + dm+l  
    KIR61385.1 263 PDEV-----SVVGFDDM---PDAGYFLPPLTTVRQDFAELGRRSLDMLLAR 305
                   ****.....********...666777888888888889*********9875 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.5   3.5e-21   6.3e-18       2      46 .]       6      50 ..       5      50 .. 0.98

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 3.5e-21
                HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                ++DVArlAGVS +TVSrvLn +++V+++tr rV+aa++ lnY+ n
  KIR61385.1  6 MRDVARLAGVSNQTVSRVLNAHPHVRDDTRRRVLAAVQALNYRRN 50
                89****************************************998 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   2.6e-19   4.7e-16      19     252 ..      82     304 ..      77     310 .. 0.88

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 2.6e-19
                   HHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-HHHHHHHHHHHH CS
  Peripla_BP_4  19 gleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayvgfdneaaGelqaeyl 115
                   ++e aa+ +g+ vtv g  + d++   ++++ + ++ v gii  +  +  +a++l++a++   pVv +      +++ +  v++dn a + l+ + l
    KIR61385.1  82 AIEGAARSAGYFVTVAGLRDLDSRSVRDAVDRLRQQSVEGIIAIAPKP-VVADTLAQAADD-LPVVGVGGG---QDKAVPSVQIDNAAGAGLATRHL 173
                   578899999999999999************************998885.899999999988.9********...*********************** PP

                   HHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEE.STTTCHHHHHHHHHHHHHTTTECEEEESSCCHHHCHHHHHHHTTT..TS CS
  Peripla_BP_4 116 aeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaeva.ganwdaekaqqalealltanpldgilaandgmaegalealeaagl..ag 209
                   ++      ++v  +aG ++ p a+er +g r++l +       + +a ++ w+a  ++ +   l +  ++ +i++a+d +a+g+l+al +ag+   +
    KIR61385.1 174 LDLGH---ATVHHVAGPADWPEATERSDGWRAALHA--TGRPSP-YAtPGAWTARAGYAQGRGLARDRSVTAIFCASDQIALGVLRALHEAGRrvPD 264
                   **998...779999********************99..333333.222557***************767************************9444 PP

                   TEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHH CS
  Peripla_BP_4 210 kvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelava 252
                   +v v+g+D +p a  ++   t   tv qd  elg+ ++++++a
    KIR61385.1 265 EVSVVGFDDMPDAGYFLPPLT---TVRQDFAELGRRSLDMLLA 304
                   466********9998887777...8888888888888888775 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.9   9.9e-06     0.018      18      61 ..       7      52 ..       6      55 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.9e-06
      HTH_31 18 eevAerlgvsestlsrlEqGrrgrp...spavlealaralgldpaer 61
                ++vA+++gvs  t+sr+ ++    +   +++ + a+++al+  +++ 
  KIR61385.1  7 RDVARLAGVSNQTVSRVLNAHPH-VrddTRRRVLAAVQALNYRRNQA 52
                69*****************8884.64557778888888887766665 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0015       2.6      12      34 ..       2      25 ..       1      26 [. 0.84
   2 ?   -2.4   0.3       3.1   5.6e+03       2      20 ..      35      54 ..      34      56 .. 0.68
   3 ?    6.5   0.1     0.005       8.9       8      44 ..      81     122 ..      78     128 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0015
      HTH_28 12 Ghsvre.aArelgisrrtvyrWik 34
                Ghs++  +Ar+ g+s +tv+r ++
  KIR61385.1  2 GHSIMRdVARLAGVSNQTVSRVLN 25
                6666666**************987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.1
      HTH_28  2 RleiikllaaGh.svreaAr 20
                R++++ +++a + ++++aAr
  KIR61385.1 35 RRRVLAAVQALNyRRNQAAR 54
                67777777775557777776 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.005
      HTH_28   8 llaaGhsvre.....aArelgisrrtvyrWikryeegGiagL 44 
                 ++++G ++++     +A +  +++r+v++ + r++++ ++g 
  KIR61385.1  81 YAIEGAARSAgyfvtVAGLRDLDSRSVRDAVDRLRQQSVEGI 122
                 5567776666777778889999**************999985 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.5e-05     0.044      12      35 ..       5      29 ..       1      57 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.5e-05
                H.HHHHHHHTSSHHHHHHHHTTSSC CS
       HTH_3 12 q.eeLAeklGvsrstisriEnGern 35
                + +++A+++Gvs +t+sr  n + +
  KIR61385.1  5 ImRDVARLAGVSNQTVSRVLNAHPH 29
                4489***************998655 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     7e-05      0.13      30      51 ..       6      27 ..       6      28 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7e-05
  HTH_Tnp_ISL3 30 vkavArqlgvSwtTVwrildry 51
                  +++vAr+ gvS  TV r+l+++
    KIR61385.1  6 MRDVARLAGVSNQTVSRVLNAH 27
                  689****************986 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00022      0.39      23      41 ..       6      24 ..       3      26 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00022
      HTH_38 23 lreIArrLgrspsTIsREl 41
                +r++Ar+ g+s +T+sR l
  KIR61385.1  6 MRDVARLAGVSNQTVSRVL 24
                79***************97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00053      0.95      21      40 ..       7      26 ..       5      27 .. 0.92
   2 ?    1.7   0.5      0.13   2.3e+02       3      32 ..      31      60 ..      29      62 .. 0.81
   3 ?   -3.4   0.0       5.2   9.3e+03      35      47 ..     108     120 ..     105     123 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00053
      HTH_23 21 reIAreLgvsrrTvyrwlkr 40
                r++Ar+ gvs +Tv+r+l++
  KIR61385.1  7 RDVARLAGVSNQTVSRVLNA 26
                89**************9975 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.13
      HTH_23  3 sereRlrillllae.GlsvreIAreLgvsrr 32
                + + R r+l +++   +++ ++Ar L v+rr
  KIR61385.1 31 RDDTRRRVLAAVQAlNYRRNQAARTL-VTRR 60
                5667888888888889*******999.7766 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 5.2
      HTH_23  35 yrwlkryreeGle 47 
                 +  + r r+  +e
  KIR61385.1 108 RDAVDRLRQQSVE 120
                 4455554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2605.98
//
Query:       KIR61386.1  [L=507]
Description: alpha-N-arabinofuranosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-52  178.8   3.0    1.8e-52  178.5   3.0    1.1  1  Glyco_hydro_43   Glycosyl hydrolases family 43
    1.9e-23   83.0   6.8      2e-11   44.5   2.2    3.1  2  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    6.5e-16   58.7   2.1    6.5e-15   55.5   2.3    2.3  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
  ------ inclusion threshold ------
       0.15   11.7   2.2        4.8    6.8   0.2    2.2  2  CDtoxinA         Cytolethal distending toxin A/C domain
        2.4    8.4   4.7        1.4    9.1   0.2    2.8  3  SWM_repeat       Putative flagellar system-associated repeat


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.5   3.0   4.9e-56   1.8e-52       1     288 []     192     486 ..     192     486 .. 0.89

  Alignments for each domain:
  == domain 1  score: 178.5 bits;  conditional E-value: 4.9e-56
                     EESESBCSSEESEEEEEETTCEEEEEEEBTEESEEEEEEESSSSSCEEEEE.CEESTTTCSTTTEECTEEEEEE....EETTEEEEEEE..EEET CS
  Glyco_hydro_43   1 yrnPvlsgfypDpsilrvgedyYlvtstfewfpglrifhSkdLvnWkqvgr.vlerrsqlsmkgknasWAPeis....khdgkyylyyt..atkk 88 
                     y nP+ +   pDp++++ ++ yYl+t+t  w + +++++S++L ++  +++ vl + ++ +++g   +WAPe++      + ++ylyy       
      KIR61386.1 192 YANPI-KANGPDPWLTYHEGYYYLATTT--WNNTVTMRRSRTLDGLASAADtVLFTLTRPNGAGT--MWAPEFHlldgPNGKRWYLYYVagREPF 281
                     68999.6677**********88888888..88**************9876515556666665555..4******666556669*****9887789 PP

                     TCCCSEEEEEEESSTT..S--EECEESSCS...TSSECEEEEEEETTSEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEEEEEEEEECGC..CTC CS
  Glyco_hydro_43  89 geakqgifvvtadspe..Gpwsdpiklkts...gssgiDpslfedddGkkYlvwgqwdkreghseiylaeldddtlklkgektklikagt..elk 176
                     + ++q+i+v++++  +  Gp++ + +l  +   +++ +Dps++  + Gk Yl+   ++     +   + el+++++        l++a+   e++
      KIR61386.1 282 DLGTQRIHVLESAGTDpmGPYTFKADLLDPtadNTWELDPSVMRLN-GKLYLLGTYYNGA---QPNFIRELSNPWTAAGTRH-LLSTATYgwETV 371
                     999*********877777*********87799**************.******9997776...777899*******998888.6666665789** PP

                     TTBBEEEEEEEEETTEEEEEEEESTSSTT.EEEEE..EEESSTTSGGEEECTCCSEE.TBTTSTSEEEEEEEEEE-TTSS.EEEEEEEESCCTTC CS
  Glyco_hydro_43 177 glkvtEGPhlykrdgyyYLlaaeggtgse.yavvv..arsksllgPyewkkknpiltsrspeepiqgpGHaslvetpdge.wyivyhagrpegrg 267
                     g+ v+EG ++++r+g+++++++++ + ++ y+ ++    + ++l   +w k+++++++rs++++++gpGH++++++pdg+ ++ivyha+++ ++g
      KIR61386.1 372 GGSVNEGAEVLQRNGKTFIIFSASHCSTPdYKLGMltYNGGDPLNSSSWVKSPQPVFQRSDANRVYGPGHNGFFKSPDGTeDWIVYHANSS-ASG 465
                     ***********************************998888**************************************************.*** PP

                     CGTTSSEEEEEEEEEETTSEE CS
  Glyco_hydro_43 268 lytlgRetllqrvewkaDGwp 288
                     +++++R+t++q+++w+aDG+p
      KIR61386.1 466 GCDMNRSTRAQKFTWNADGTP 486
                     *******************98 PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   2.2   5.5e-15     2e-11      16      89 .]      42     117 ..      36     117 .. 0.95
   2 !   39.3   0.2   2.2e-13   8.1e-10       1      56 [.     123     179 ..     123     186 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 5.5e-15
                      EEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESS..EEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  16 tiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdg..tyrivnkasgkvLdvaggstanGtnvqqw 89 
                      ti+n+a+g++++v+gg+++n  ++ q  c++++ q++++++ ++    y++++  +g+++d++g+sta+ ++v+q+
       KIR61386.1  42 TIVNQANGNCVEVPGGAATNALQLTQAGCNAGTRQTFTVTPVAGTtdRYTVTTLTAGSCVDISGASTADNAAVIQY 117
                      8**************************************88886688****************99*********98 PP

  == domain 2  score: 39.3 bits;  conditional E-value: 2.2e-13
                      CCGEEEEC.ETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEEC CS
  RicinB_lectin_2   1 anQqWtlg.sggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrled 56 
                      anQq++l  +g+ g++++++vasgk++++a++s+a++++++q +c++a+n +Wrl+ 
       KIR61386.1 123 ANQQFRLAaNGTAGTVNLVSVASGKCVAAANDSPAANTALVQLPCTTATNRTWRLTG 179
                      69*****558889*****************************************965 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   2.3   1.8e-18   6.5e-15       3     127 .]      41     175 ..      39     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 1.8e-18
                     EEEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEE....TTSEEEETT.....TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEE CS
  Ricin_B_lectin   3 geirnvasgkCLdvegeska.gapvglydChgskgkQlwtlt....kdgeirska....qselCldvs..staegakvvlakChkgkgnqrWefd 86 
                     ++i+n+a+g C++v+g++++   +++++ C+ ++  Q +t+t    ++ ++        + + C+d+s  sta++a v++++Ch g++nq++++ 
      KIR61386.1  41 TTIVNQANGNCVEVPGGAATnALQLTQAGCNAGTR-QTFTVTpvagTTDRY---TvttlTAGSCVDISgaSTADNAAVIQYTCH-GGANQQFRLA 130
                     689***************98888999999*99977.******865422333...233469************************.999******* PP

                     TTTTE....EEETTTSEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  87 kdgtq....irhkksgkCLdvkgasksne.klilkkcdsgsdsQkW 127
                      +gt     +++  sgkC+ ++++s +++ +l++ +c +++++  W
      KIR61386.1 131 ANGTAgtvnLVSVASGKCVAAANDSPAANtALVQLPC-TTATNRTW 175
                     **999988899999*************9988888888.88887777 PP

>> CDtoxinA  Cytolethal distending toxin A/C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.5    0.0038        14      55     114 ..      42     107 ..      31     118 .. 0.76
   2 ?    6.8   0.2    0.0013       4.8      72     127 ..     114     167 ..      91     179 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0038
                 EEEETTT--EEEE....ETTEEEEE-..--TT-GGG-EEEEEB..TTS-EEEEETTT--EEEE-SS- CS
    CDtoxinA  55 qfknvdegtClaa....yenGvialkk.CdeddketvFslipt..ttgavqikslssgeCitanfls 114
                  ++n+++g+C+++      n ++  ++ C++   ++ F++ p   tt  + +  l +g C+  +  s
  KIR61386.1  42 TIVNQANGNCVEVpggaATNALQLTQAgCNAGT-RQTFTVTPVagTTDRYTVTTLTAGSCVDISGAS 107
                 699*********954445566666777899997.788887775337888999999999999776655 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0013
                 EEEE-.--TT-GGG-EEEEEB.TTS-EEEEETTT--EEEE-SS-SS.S-B-EEEE-- CS
    CDtoxinA  72 vialkkCdeddketvFslipt.ttgavqikslssgeCitanflsrlpiaktltlekC 127
                 vi+++ C+    ++ F l    t g v + s++sg+C+ a + s     + l   +C
  KIR61386.1 114 VIQYT-CHGGA-NQQFRLAANgTAGTVNLVSVASGKCVAAANDSPA-ANTALVQLPC 167
                 44444.66665.6777776642567888888888888877665543.4455555566 PP

>> SWM_repeat  Putative flagellar system-associated repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.48   1.7e+03      29      53 ..      66      93 ..      60     115 .. 0.61
   2 ?    9.1   0.2    0.0004       1.4      35      74 ..     121     159 ..     103     171 .. 0.80
   3 ?   -1.6   0.1      0.87   3.1e+03      59      71 ..     236     248 ..     217     253 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.48
  SWM_repeat 29 dsaaankpaaaaFtVtvn.g..aaitVt 53
                 +a  n+ +++ FtVt   g   + tVt
  KIR61386.1 66 TQAGCNAGTRQTFTVTPVaGttDRYTVT 93
                5555566677777777332322344444 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0004
  SWM_repeat  35 kpaaaaFtVtvngaaitVtgvsvdaanktVtLtLsravan 74 
                   a+++F+  +ng+a tV+ vsv a++k V    +++ an
  KIR61386.1 121 GGANQQFRLAANGTAGTVNLVSV-ASGKCVAAANDSPAAN 159
                 45799******************.9999997655555555 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.87
  SWM_repeat  59 aanktVtLtLsra 71 
                 +a+ tV  tL+r+
  KIR61386.1 236 SAADTVLFTLTRP 248
                 4788999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 3191.18
//
Query:       KIR61387.1  [L=1096]
Description: F5/8 type C domain protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-13   49.0   1.2    5.9e-13   49.0   1.2    2.4  2  F5_F8_type_C  F5/8 type C domain
    5.6e-10   39.6   4.8    5.6e-10   39.6   4.8    2.7  2  CBM_6         Carbohydrate binding module (family 6)
    4.5e-07   30.2   4.7    1.6e-06   28.4   4.7    2.0  1  CBM_35        Carbohydrate binding module (family 35)
    0.00014   22.0   1.6    0.00014   22.0   1.6    2.2  2  DUF5010_C     DUF5010 C-terminal domain


Domain annotation for each model (and alignments):
>> F5_F8_type_C  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.4   3.0         4   1.8e+04      21      34 ..     655     668 ..     640     680 .. 0.60
   2 !   49.0   1.2   1.3e-16   5.9e-13       2     118 ..     830     949 ..     829     956 .. 0.81

  Alignments for each domain:
  == domain 1  score: -5.4 bits;  conditional E-value: 4
                   STTSSEEESSSSTT CS
  F5_F8_type_C  21 nkntaWsssssddk 34 
                   + n +W+ +++ ++
    KIR61387.1 655 DANEFWANWNPGSQ 668
                   23668888888775 PP

  == domain 2  score: 49.0 bits;  conditional E-value: 1.3e-16
                   EEESSCSSTTTGGGGGGSSSTTS..SEEESSSSTTEEEEEEEEEEEEEEEEEEEECSSTT....SSEEEEEEEEEESSSSSEEEEEE....ECE.EE CS
  F5_F8_type_C   2 itasseesgewpaaaaldGnknt..aWsssssddkqwlqvdLgkpkkidgvvtqgrqdgg....nayvksykiqvsddgetWttvkd....ekv.pg 87 
                   +tas++ +++ +a aa+dG +++  +W + +s+++ w++++Lg++k++d ++++   +         + sy++q+  dg+ W +v +     ++ +g
    KIR61387.1 830 VTASTT-ASGTSATAAIDGYPTNepFWGAGGSNAQDWYEINLGSAKTVDELRLYVKDSRPasttYRPPASYQVQY-HDGSGWVNVTSqvgtPATpQG 924
                   799999.9999********776667***9999999******************9886665777888899******.89999****996333222344 PP

                   SSSSSSSEEEEEEEEEEEEEEEEEEEEEESS CS
  F5_F8_type_C  88 nsdnstpvtntfdppvkaryvrltptswngg 118
                   n++      ++f  +v+a+ +r+ +t+++g+
    KIR61387.1 925 NYN-----DVRFT-AVTAQRIRVLLTHAAGS 949
                   444.....77777.************95554 PP

>> CBM_6  Carbohydrate binding module (family 6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2         3   1.4e+04      58      84 ..     184     213 ..     167     234 .. 0.55
   2 !   39.6   4.8   1.2e-13   5.6e-10      17     123 ..     992    1095 ..     975    1096 .] 0.80

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3
                 SEEEEEEEESS...TTSSEEEEEEE---SS CS
       CBM_6  58 aggsielrlds...atgtlvgtvsvpstgg 84 
                 a  ++ +r ++    t tl +t +++s+g+
  KIR61387.1 184 AVTNLAIRNGGsapTTLTLRATSPYASSGS 213
                 335556666553333344444444444444 PP

  == domain 2  score: 39.6 bits;  conditional E-value: 1.2e-13
                  -S.TTTSEEEE---T..T-EEEEEEEEESSTEEEEEEEEEEESSSEEEEEEEESSTTSSEEEEEEE---SSTTEEEEEEEEEEE-SEEEEEEEEEEC CS
       CBM_6   17 ta.agggkavgyinn..GdwlaYkdvdfgsggaysvearvasgaaggsielrldsatgtlvgtvsvpstggwqtyvtvsanvtlptGvhdlylvftg 110 
                  +a a+gg  vgy+ n  G+ + +++v ++++g+++v++++as+ a  s ++++++  gt   tv+ p +ggw+t  tv a+vtl++G+++l +  t+
  KIR61387.1  992 SAgASGGALVGYVGNgaGNTVRFNNVTVDTAGPRTVTVSYASAEA-RSMQISVNG--GTA-VTVNAPGSGGWDTIGTVAATVTLAAGTNTLTFGNTA 1084
                  22233777888877622579*****************99999888.59*******..555.5999**************************999999 PP

                  SST---EEEEEEE CS
       CBM_6  111 gaeylfnldwfkf 123 
                  g  +  +ld +++
  KIR61387.1 1085 G--WAPDLDRIQI 1095
                  5..8888988876 PP

>> CBM_35  Carbohydrate binding module (family 35)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   4.7   3.5e-10   1.6e-06       5     110 ..     978    1086 ..     973    1095 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 3.5e-10
      CBM_35    5 aekatltglkvdka...akavsgtGyvgefegagdavsl.nVnvekaGeynlnvtfsapygsKentlvvnGtavatvafaesdevkq..ttvitvkL 95  
                  a   tl+g ++  +   a +   +Gyvg+  gag+ v + nV+v++aG  +++v +++   ++  ++ vnG+   tv  + s       t++ tv+L
  KIR61387.1  978 ASGNTLSGQAATRSsagASGGALVGYVGN--GAGNTVRFnNVTVDTAGPRTVTVSYASA-EARSMQISVNGGTAVTVNAPGSGGWDTigTVAATVTL 1071
                  44567777666555000455556788886..7888888746***************997.678899999999999999999975543227899**** PP

      CBM_35   96 kAGantikidrdWGy 110 
                   AG nt+++++  G+
  KIR61387.1 1072 AAGTNTLTFGNTAGW 1086
                  ***********8888 PP

>> DUF5010_C  DUF5010 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       2.7   1.2e+04      72      99 ..     906     932 ..     898     937 .. 0.62
   2 !   22.0   1.6   3.1e-08   0.00014      13      89 ..     995    1072 ..     984    1087 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.7
   DUF5010_C  72 Tgglqewetvdagtlkieakgyhtvkle 99 
                  +g+ + +t ++gt  ++++ y++v+ +
  KIR61387.1 906 GSGWVN-VTSQVGTPATPQGNYNDVRFT 932
                 455333.456677777777777777765 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 3.1e-08
   DUF5010_C   13 vnggwnvtsteaG..ewlewkeipfk.aGavtlkvryattkeaakvrfvidgtagpsvelpaTgglqewetvdagtlkie 89  
                    gg  v+ + +G  ++++++++ +  aG  t+ v ya+  ea+++++ ++g +  +v+ p  gg+++  tv+a t+++ 
  KIR61387.1  995 ASGGALVGYVGNGagNTVRFNNVTVDtAGPRTVTVSYAS-AEARSMQISVNGGTAVTVNAPGSGGWDTIGTVAA-TVTLA 1072
                  566666666655444********99637***********.9************************888888865.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1096 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.26s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 7196.87
//
Query:       KIR61388.1  [L=416]
Description: cellulose-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-32  111.7  17.4      2e-32  111.5  11.2    2.4  2  CBM_2     Cellulose binding domain


Domain annotation for each model (and alignments):
>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5  11.2   1.1e-36     2e-32       1     101 []      38     137 ..      38     137 .. 0.99
   2 !    3.7   0.4    0.0044        79      44      93 ..     181     232 ..     162     239 .. 0.73

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 1.1e-36
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTE CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGa 99 
                 ++++y+vts+W++Gf a vtv+N g+ + +gWt+ w+++agq+v q+Wna+vsqsG++vtatn+s+Ng++ +G+++sfGf+g+ +g+n+ap+sft+nG+
  KIR61388.1  38 CRVDYRVTSQWSGGFGADVTVTNLGDRV-DGWTLAWSYTAGQTVSQAWNASVSQSGSRVTATNASYNGSLGTGAATSFGFNGTFSGTNPAPASFTLNGT 135
                 899**********************987.9********************************************************************* PP

                 E- CS
       CBM_2 100 aC 101
                 +C
  KIR61388.1 136 TC 137
                 *9 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0044
                 EEEEESE..EEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S- CS
       CBM_2  44 vtqlWna..tvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsapts 93 
                 + q+W+   ++ ++Gn++ ++n +w +  a  g++++ ++   +++ +a+++
  KIR61388.1 181 LNQVWQHveQTYNNGNPLGFRNYGWDQLFANRGAINYCVRWDSSATVTAAQR 232
                 56677642256789**************999999999988888888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2919.52
//
Query:       KIR61389.1  [L=145]
Description: hypothetical protein TK50_27450 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0036   17.4   0.0     0.0076   16.4   0.0    1.6  1  TPR_8     Tetratricopeptide repeat
     0.0049   16.6   0.0     0.0089   15.8   0.0    1.4  1  TPR_1     Tetratricopeptide repeat
     0.0057   16.7   0.0      0.015   15.4   0.0    1.6  1  TPR_2     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.012   16.4   0.4      0.028   15.2   0.1    1.9  2  TPR_14    Tetratricopeptide repeat
      0.021   14.8   0.0      0.037   14.1   0.0    1.5  1  TPR_7     Tetratricopeptide repeat
      0.022   15.0   0.0       0.04   14.2   0.0    1.4  1  TPR_12    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.5e-06    0.0076       3      28 ..      19      44 ..      17      45 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.5e-06
                HHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8  3 ayynlgsiylklgdyeeAkeyyekal 28
                +++  g+++ +lg+ + A e+y++ l
  KIR61389.1 19 SWFDAGQVHGQLGRADLAAECYRRSL 44
                79*********************986 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     3e-06    0.0089       4      32 ..      20      48 ..      17      49 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3e-06
                HHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  4 lynlGnayfklgkydeAleyyekALelnP 32
                ++  G+++ +lg+ d A e+y++ L + P
  KIR61389.1 20 WFDAGQVHGQLGRADLAAECYRRSLAHWP 48
                77789********************9988 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     5e-06     0.015       4      29 ..      20      45 ..      18      48 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5e-06
       TPR_2  4 lynlGlayyklgdyeeAleafekAle 29
                ++  G+++ +lg+ + A+e+++++l+
  KIR61389.1 20 WFDAGQVHGQLGRADLAAECYRRSLA 45
                99*********************997 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         6   1.8e+04      23      31 ..       5      13 ..       4      14 .. 0.59
   2 ?   15.2   0.1   9.3e-06     0.028       4      33 ..      20      49 ..      18      66 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6
      TPR_14 23 llrralala 31
                +lr+a  ++
  KIR61389.1  5 YLRAAHLQF 13
                567776555 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 9.3e-06
      TPR_14  4 llalaeallalGdpdeAiallrralalaPd 33
                + ++++++ +lG+ d A++++rr la++P+
  KIR61389.1 20 WFDAGQVHGQLGRADLAAECYRRSLAHWPT 49
                8899************************96 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.2e-05     0.037       4      28 ..      22      46 ..      19      63 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
       TPR_7  4 nLarlysrlGdyeeAielyeqsLal 28
                  ++++ +lG+ + A+e+y++sLa 
  KIR61389.1 22 DAGQVHGQLGRADLAAECYRRSLAH 46
                5699*****************6653 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.3e-05      0.04      48      74 ..      20      46 ..      18      49 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
      TPR_12 48 lrnLgrlyralgryeeAlelleealai 74
                 ++ g+++ +lgr + A e ++++la 
  KIR61389.1 20 WFDAGQVHGQLGRADLAAECYRRSLAH 46
                578999999*************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       190  (0.0105974); expected 358.6 (0.02)
Passed bias filter:                      128  (0.00713927); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 970.74
//
Query:       KIR61390.1  [L=142]
Description: hypothetical protein TK50_27455 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-11   42.0   0.1    8.5e-11   41.6   0.1    1.1  1  Inhibitor_I36  Peptidase inhibitor family I36
  ------ inclusion threshold ------
      0.067   12.2   0.6      0.073   12.1   0.6    1.1  1  DEC-1_N        DEC-1 protein, N-terminal region


Domain annotation for each model (and alignments):
>> Inhibitor_I36  Peptidase inhibitor family I36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.1   9.5e-15   8.5e-11       3      66 ..      48     118 ..      46     121 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 9.5e-15
  Inhibitor_I36   3 aaasdCp.agyfClysdangtGtraelsgssa......avganmndnarSvwNrtgsrvtvYtdanytgel 66 
                    +a  +Cp ++ +Cl++++n+tG++ +ls+ ++      +v+a++ d+arS++N ++++++++ + ++ g +
     KIR61390.1  48 PAVDACPfPNTLCLFEGTNFTGEQLTLSSLVSpgtcvsLVDAGWGDRARSAINTSSRSAAMFMNDDCAGGA 118
                    7788999789********************999*****99***************************9876 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   8.1e-06     0.073      93     162 ..       9      72 ..       1      93 [. 0.62

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.1e-06
     DEC-1_N  93 gpqvGaalqsllplqsldgllGaaapapalaaapppapapvpddpapapaapqaaafaffnpanldassl 162
                  p+v    + l+ ++ l +llG      a++a+   +p pv+ +   + a+p ++++++f+ +n+    l
  KIR61390.1   9 PPTVRRLSHTLVVFGLLAALLG------AVSAPATASPDPVARSTPAVDACPFPNTLCLFEGTNFTGEQL 72 
                 4555555566666666777777......555555555666664444466777777778888888876543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1062.17
//
Query:       KIR61391.1  [L=192]
Description: hypothetical protein TK50_27460 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.097   11.0   0.0       0.11   10.8   0.0    1.1  1  DUF3029   Protein of unknown function (DUF3029)


Domain annotation for each model (and alignments):
>> DUF3029  Protein of unknown function (DUF3029)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.2e-06      0.11     315     401 ..      34     116 ..       4     134 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.2e-06
     DUF3029 315 eryGkdeeanelgeeileklaelveetkakycevtegrallHaqvGissdk.evtpgvRipvGeEPelvkhlkasakfHkyfpsGisd 401
                 +  G++ e  +l ++i++++++++e+++       +++a    q G +++k  v  gvR+ +G EP  ++ l  ++k+  ++ +Gi++
  KIR61391.1  34 RAAGQEAEPADLQAQIVARMRTTLEQADPGQ----HNHAGHTVQQGATEEKpPVICGVRV-YGYEPAEATTLADVQKVYGFHLCGIAE 116
                 55699999999**********9999877554....466666678888877626899***8.9***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1499.40
//
Query:       KIR61392.1  [L=418]
Description: hypothetical protein TK50_27465 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-18   66.5  16.6      2e-12   47.2   3.0    2.2  2  PQQ_2     PQQ-like domain
    8.8e-13   47.5   6.7      0.026   14.4   0.0    6.9  7  PQQ       PQQ enzyme repeat
  ------ inclusion threshold ------
      0.044   13.4   2.7       0.16   11.5   0.0    3.1  5  DUF799    Putative bacterial lipoprotein (DUF799)
       0.44   11.1   0.1       0.44   11.1   0.1    6.7  7  PQQ_3     PQQ-like domain


Domain annotation for each model (and alignments):
>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   3.0   4.4e-16     2e-12      36     219 ..      40     220 ..      23     232 .. 0.69
   2 !   24.8   6.0   3.1e-09   1.4e-05       5     148 ..     234     389 ..     231     402 .. 0.65

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 4.4e-16
       PQQ_2  36 ggtlfvatgggrlvaldaatGkvlWettlegpvvgaplvaegrvvvvasdg.qlialdaedGkrlWstqqrseepaelrssaspavagdtvvvges... 130
                 g +++v  +++ l a+d+atG+++W+  ++   +    +a++ +v+v+sd+  +  lda++G + W+t++++    +       +v+ +tv++ e    
  KIR61392.1  40 GPVILVP-DTRDLRAVDRATGQERWRHPFTTGYQY--VIADESIVAVDSDDgGMEVLDAATGATRWRTAESQ----D------VVVHEQTVYARECagt 125
                 6678887.899999***************998555..478888888775555***************77777....3......3334555555444232 PP

       PQQ_2 131 ....sgklvaldpkdGkvlWerel.aaprgtselsrvgdisgrpvvaeg.tVyassgqgr.llal.dlatgrrlwskeissinglpildgdllyvvs 219
                        +v++d+ +G++lWer+  + +r  s++    ++ ++pv+ +  +V  s+ + +   a    +tgr+   + ++       ++gdll++++
  KIR61392.1 126 ggsaTCTIVGRDVPSGRQLWERPAdRFAR-VSDVTLGARTPYAPVSGRYvAVRLSTSPRSaAYAPvAPTTGRVGAGRLPNRAWY-GFVAGDLLVTTD 220
                 22245566****************66655.666889999********8874444444443234443444444224444666666.788888888887 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 3.1e-09
       PQQ_2   5 vsaldaatGaelWrv........dlarp.........lgggvsravlsggtlfva..tgggrlvaldaatGkvlWettlegpvvgap.lvaegrvvvva 83 
                 ++ ++aatG + W+         d   +         ++g +  ++ + + ++ +  +g+++lv l   tG+ +W+ ++ g     p   ++  v+v+ 
  KIR61392.1 234 IATVNAATGDKGWSGvvfsgrreD---GecgkrlahhHSGLTLIGT-GTRLVA-VtaDGRPQLVDLR--TGRTVWKGAAAGV----PiDGDDRSVLVRG 321
                 778999999999999665444330...0333444442455553344.333333.2368999999666..9999999998554....3145566666666 PP

       PQQ_2  84 ..sdgqlialdaedGkrlWstqqrseepae.lrssaspavagdtvvvges...sgklvaldpkdGkvlWer 148
                   + g l+ ld  +G + W+   + +++++ ++ s  +av+ + v+v  +   +  + ++ +++G++l  +
  KIR61392.1 322 naDTGGLALLDLSTGVTRWT---APDPMLSgASASWRSAVTEGLVAVSAAeddRPIVLVYEARTGRQLGRY 389
                 64444999999999999999...444566644455555555666665555777888999999999998766 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   5.8e-06     0.026       3      26 ..      42      65 ..      40      68 .. 0.86
   2 !   13.4   0.1   1.2e-05     0.055       3      33 ..      80     111 ..      78     116 .. 0.87
   3 ?    3.1   0.0     0.023     1e+02       7      28 ..     128     149 ..     124     150 .. 0.83
   4 ?    0.1   0.1       0.2   9.1e+02      13      24 ..     235     246 ..     233     247 .. 0.80
   5 !    8.4   0.1   0.00046       2.1       5      27 ..     281     304 ..     277     310 .. 0.78
   6 ?    4.0   0.0     0.012        53       7      27 ..     323     343 ..     317     351 .. 0.83
   7 ?   -3.3   0.0       2.4   1.1e+04      13      22 ..     376     385 ..     375     388 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.8e-06
                EEEEETTSEEEEEETTTCCEEEEE CS
         PQQ  3 vylgsadGylyAlDadTGkvlWrf 26
                v+l ++   l+A+D++TG+++Wr+
  KIR61392.1 42 VILVPDTRDLRAVDRATGQERWRH 65
                677788888*************97 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.2e-05
                 EEEE.ETTSEEEEEETTTCCEEEEEESSSCGS CS
         PQQ   3 vylg.sadGylyAlDadTGkvlWrfktggpvl 33 
                 +++  s+dG    lDa+TG  +Wr+ ++++v+
  KIR61392.1  80 IVAVdSDDGGMEVLDAATGATRWRTAESQDVV 111
                 667779999999*************9999886 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.023
                 ETTSEEEEEETTTCCEEEEEES CS
         PQQ   7 sadGylyAlDadTGkvlWrfkt 28 
                 sa  +++  D+ +G+ lW+ ++
  KIR61392.1 128 SATCTIVGRDVPSGRQLWERPA 149
                 777889999*********9875 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.2
                 EEEETTTCCEEE CS
         PQQ  13 yAlDadTGkvlW 24 
                   ++a+TG++ W
  KIR61392.1 235 ATVNAATGDKGW 246
                 569*****9977 PP

  == domain 5  score: 8.4 bits;  conditional E-value: 0.00046
                 EE.ETTSEEEEEETTTCCEEEEEE CS
         PQQ   5 lg.sadGylyAlDadTGkvlWrfk 27 
                 ++ +adG+   +D++TG+ +W+  
  KIR61392.1 281 VAvTADGRPQLVDLRTGRTVWKGA 304
                 44499999999**********965 PP

  == domain 6  score: 4.0 bits;  conditional E-value: 0.012
                 ETTSEEEEEETTTCCEEEEEE CS
         PQQ   7 sadGylyAlDadTGkvlWrfk 27 
                  + G l  lD++TG  +W+ +
  KIR61392.1 323 ADTGGLALLDLSTGVTRWTAP 343
                 67899999**********876 PP

  == domain 7  score: -3.3 bits;  conditional E-value: 2.4
                 EEEETTTCCE CS
         PQQ  13 yAlDadTGkv 22 
                 + + a+TG+ 
  KIR61392.1 376 LVYEARTGRQ 385
                 6788999986 PP

>> DUF799  Putative bacterial lipoprotein (DUF799)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.26   1.2e+03      97     125 ..      73     105 ..      52     118 .. 0.68
   2 ?   -3.6   0.0       1.6   7.3e+03     114     124 ..     137     147 ..     128     151 .. 0.79
   3 ?   -1.7   0.0      0.43   1.9e+03     106     133 ..     230     257 ..     226     266 .. 0.77
   4 ?   11.5   0.0   3.6e-05      0.16     110     128 ..     289     307 ..     273     321 .. 0.77
   5 ?   -1.6   0.0       0.4   1.8e+03     111     127 ..     329     345 ..     312     368 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.26
      DUF799  97 Ykvidsetevsas.....aklvDlrtGktlWegs 125
                 Y vi+ e+ v+++      +++D+ tG+t W+ +
  KIR61392.1  73 Y-VIADESIVAVDsddggMEVLDAATGATRWRTA 105
                 3.45555556554222224688999999999765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.6
      DUF799 114 DlrtGktlWeg 124
                 D+ +G++lWe 
  KIR61392.1 137 DVPSGRQLWER 147
                 8889*****86 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.43
      DUF799 106 vsasaklvDlrtGktlWegsatasseek 133
                  ++s   v++ tG++ W+g     ++e 
  KIR61392.1 230 CTVSIATVNAATGDKGWSGVVFSGRRED 257
                 67788889999*******9876666555 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 3.6e-05
      DUF799 110 aklvDlrtGktlWegsata 128
                  +lvDlrtG+t+W+g+a  
  KIR61392.1 289 PQLVDLRTGRTVWKGAAAG 307
                 47*************9875 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 0.4
      DUF799 111 klvDlrtGktlWegsat 127
                  l+Dl tG t W+    
  KIR61392.1 329 ALLDLSTGVTRWTAPDP 345
                 689*********97543 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       0.5   2.3e+03      21      40 .]      40      58 ..      15      58 .. 0.66
   2 ?   11.1   0.1   9.7e-05      0.44       1      40 []      59      97 ..      59      97 .. 0.86
   3 ?   -0.7   0.0      0.51   2.3e+03       1      25 [.      98     118 ..      98     121 .. 0.69
   4 ?    3.1   0.1     0.033   1.5e+02       1      38 [.     141     178 ..     141     180 .. 0.76
   5 ?   -1.9   0.1       1.2   5.2e+03      19      29 ..     211     221 ..     192     223 .. 0.66
   6 ?    1.2   0.5      0.12   5.6e+02       9      23 ..     241     255 ..     238     288 .. 0.53
   7 ?    0.6   0.2       0.2     9e+02       3      29 ..     338     368 ..     336     382 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.5
       PQQ_3 21 gglvyvgtgdGtlyAlDaet 40
                g ++ v ++   l+A+D +t
  KIR61392.1 40 GPVILVPDT-RDLRAVDRAT 58
                556777776.8899999887 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 9.7e-05
       PQQ_3  1 GevlWsvqlpgpvnsspavdgglvyvgtg.dGtlyAlDaet 40
                G+++W++++   ++   ++++  ++++++ dG++  lDa+t
  KIR61392.1 59 GQERWRHPFTTGYQ--YVIADESIVAVDSdDGGMEVLDAAT 97
                99*****8876543..49999999999999*********98 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.51
       PQQ_3   1 GevlWsvqlpgpvnsspavdgglvy 25 
                 G ++W++    +v    +v + +vy
  KIR61392.1  98 GATRWRTAESQDV----VVHEQTVY 118
                 7788998766564....66677776 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.033
       PQQ_3   1 GevlWsvqlpg..pvnsspavdgglvyvgtgdGtlyAlDa 38 
                 G++lW+++ +   +v s ++++ ++ y+  + G+ +A+  
  KIR61392.1 141 GRQLWERPADRfaRV-SDVTLGARTPYAPVS-GRYVAVRL 178
                 99*****98865355.888888888888887.88777765 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 1.2
       PQQ_3  19 vdgglvyvgtg 29 
                 v+g+l+++++ 
  KIR61392.1 211 VAGDLLVTTDN 221
                 56777777665 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 0.12
       PQQ_3   9 lpgpvnsspavdggl 23 
                 ++++++s+++++g++
  KIR61392.1 241 TGDKGWSGVVFSGRR 255
                 677888888777764 PP

  == domain 7  score: 0.6 bits;  conditional E-value: 0.2
       PQQ_3   3 vlWsvqlpgpvnssp....avdgglvyvgtg 29 
                 ++W+ + p   ++s+    av +glv v++ 
  KIR61392.1 338 TRWTAPDPMLSGASAswrsAVTEGLVAVSAA 368
                 5788877765445558899999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2924.79
//
Query:       KIR61393.1  [L=129]
Description: hypothetical protein TK50_27475 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0025   17.7   3.2     0.0048   16.8   1.3    2.2  2  Inhibitor_I36  Peptidase inhibitor family I36


Domain annotation for each model (and alignments):
>> Inhibitor_I36  Peptidase inhibitor family I36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.3   2.7e-07    0.0048       4      33 ..      35      66 ..      32      99 .. 0.70
   2 ?    0.4   0.0     0.035   6.3e+02      10      21 ..     100     111 ..      97     115 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.7e-07
  Inhibitor_I36  4 aasdCpagyfClysdangt..Gtraelsgssa 33
                   +a +Cp+g++C++ ++n    G  a+ s + +
     KIR61393.1 35 GAGNCPQGMLCIWPNWNHPpeGPTATPSLTTN 66
                   5789*************754466666555555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.035
  Inhibitor_I36  10 agyfClysdang 21 
                    +g  C+y + +g
     KIR61393.1 100 SGTICVYPGGDG 111
                    6889**998666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 954.32
//
Query:       KIR61394.1  [L=86]
Description: hypothetical protein TK50_27480 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        8.5    6.5   7.5    1.3e+02    2.7   7.5    2.5  1  DUF3551   Protein of unknown function (DUF3551)


Domain annotation for each model (and alignments):
>> DUF3551  Protein of unknown function (DUF3551)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   7.5    0.0074   1.3e+02       2      46 ..      11      69 ..       7      74 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0074
     DUF3551  2 RrvllaalAaaglaaaattpAeA.............rdypyClqgreygy.pgeCsyat 46
                R +++a +Aaa  ++++ tpA A             + + y +q + +g+  + C+y t
  KIR61394.1 11 RLAIVATAAAAVSFTVQPTPAVAvpfdwngyfttyeECEAYRIQASYWGEvSNSCEYRT 69
                66778888888888888999998666655555332222345566666666455666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 614.38
//
Query:       KIR61395.1  [L=333]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-35  122.6   0.1    4.4e-35  121.5   0.1    1.6  1  Peripla_BP_3    Periplasmic binding protein-like domain
    2.3e-19   69.9   0.0    2.9e-19   69.6   0.0    1.1  1  Peripla_BP_1    Periplasmic binding proteins and sugar bindin
    3.4e-15   55.6   0.5      1e-14   54.1   0.5    1.8  1  LacI            Bacterial regulatory proteins, lacI family
    6.1e-10   39.3   2.3      2e-07   31.2   0.8    2.8  2  HTH_31          Helix-turn-helix domain
      1e-05   25.2   0.0    3.2e-05   23.6   0.0    1.8  1  Peripla_BP_4    Periplasmic binding protein domain
     0.0011   18.9   0.1     0.0035   17.4   0.0    1.8  2  HTH_3           Helix-turn-helix
  ------ inclusion threshold ------
       0.01   15.6   0.2      0.046   13.5   0.0    2.3  2  HTH_IclR        IclR helix-turn-helix domain
      0.036   13.9   0.0      0.095   12.6   0.0    1.7  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
      0.039   14.4   0.0      0.079   13.4   0.0    1.5  1  HTH_26          Cro/C1-type HTH DNA-binding domain
       0.04   13.7   0.8       0.15   11.9   0.1    2.4  2  HTH_23          Homeodomain-like domain
      0.067   12.6   0.1       0.24   10.8   0.1    2.0  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
       0.18   11.6   0.2       0.69    9.7   0.1    1.9  2  HTH_38          Helix-turn-helix domain
        0.4   10.5   1.9        1.6    8.6   0.2    2.6  3  HTH_AsnC-type   AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.5   0.1   3.2e-38   4.4e-35       3     166 .]     173     327 ..     171     327 .. 0.83

  Alignments for each domain:
  == domain 1  score: 121.5 bits;  conditional E-value: 3.2e-38
                   HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHHHHCC-SEEEEESSCCHHHHHHHHHCCTT- CS
  Peripla_BP_3   3 hLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalll.qalklaalPtAviaasDelAlgvlqalreagl 98 
                   hL +lGh ri+++   g+ ++  s  r++ ++ a  +   +++e+v ++  + ++a+++aa+l+ + +      t+vi+asD++Alg ++a+r+ gl
    KIR61395.1 173 HLRSLGHERIGMVL--GPEDHVPS--RRKLAALARIAGWRDPDECVERSSFSMEGARVAAAKLVdRGV------TGVICASDVVALGTIRAVRRLGL 259
                   9*************..55544444..333333333333345777777788888888888888665555......*********************** PP

                   -TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  99 rvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   +vP+d+sv+gfdds++++ ++PplTtvrqp+e++G+aa++ll+++++g      + l +pelv+R+St
    KIR61395.1 260 SVPDDVSVVGFDDSAFMTCTDPPLTTVRQPIETMGQAAVDLLVTQIDGAGVLRDELLFEPELVVRGST 327
                   **********************************************8888888888899********8 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   2.1e-22   2.9e-19       4     259 ..      60     305 ..      57     316 .. 0.89

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 2.1e-22
                   EEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE..-...S-GGHHHHHHHHHHT-EEEEESS--B-TTT CS
  Peripla_BP_1   4 lglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliia..t...sdtsfdditakaesgipvialedaidapdg 94 
                   +glvlp+l++P f  l + +t ++++ g+   l a   ++  +  +++ l+ +++ g+i a  +   ++ s d+ ++    g+pv++++  id+  +
    KIR61395.1  60 VGLVLPELQNPIFPALAEVVTGTLAQRGYTPALCARTIGGVSEsDYVEMLLDHQVSGIIFAggSyalAAASHDHYRRLTDRGLPVVLVNAGIDEL-D 155
                   8**********************************999999999***************9953244345668999999999**********9999.9 PP

                   S-EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHH CS
  Peripla_BP_1  95 vPcvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindea 191
                    P v  dd  a e++  +L + gh+r i ++ gpe +  ++++     a  + aG    d  v   s ++e+a+ a+ +l  ++ +   +++ +d +
    KIR61395.1 156 FPRVSTDDAVAVEQAYGHLRSLGHER-IGMVLGPEDHVPSRRKL---AALARIAGWRDPDECVERSSFSMEGARVAAAKLVDRGVT--GVICASDVV 246
                   **************************.*9999999999888877...344455788677888999*******************99..9******** PP

                   HHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH CS
  Peripla_BP_1 192 alGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqki 259
                   alG ++a++  G l+ +++v     svv++d        +  ++pl++   p e +G++a d ++  i
    KIR61395.1 247 ALGTIRAVRRLG-LSVPDDV-----SVVGFDDS---AFMTCTDPPLTTVRQPIETMGQAAVDLLVTQI 305
                   ************.*******.....*****987...45666778888888888**********99988 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.5   7.2e-18     1e-14       2      44 ..       5      47 ..       4      48 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 7.2e-18
                HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB- CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYi 44
                + +VAr+AGVS aTVSrvLn+++ Vse+tr+ V+ a++ l+Y 
  KIR61395.1  5 LTEVARKAGVSEATVSRVLNGRGGVSESTRTAVLTALDVLGYE 47
                789***************************************6 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.8   1.5e-10     2e-07      16      58 ..       4      45 ..       2      50 .. 0.91
   2 !    6.5   0.0    0.0076        11      41      60 ..     192     212 ..     182     215 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.5e-10
      HTH_31 16 sqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldp 58
                +++evA+ +gvse+t+sr+ +Gr g +s+++ +a+++al++ +
  KIR61395.1  4 RLTEVARKAGVSEATVSRVLNGRGG-VSESTRTAVLTALDVLG 45
                678*********************9.*************9865 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0076
      HTH_31  41 rpspavlealaralgl.dpae 60 
                 +ps++ l+alar+ g  dp+e
  KIR61395.1 192 VPSRRKLAALARIAGWrDPDE 212
                 79*************978887 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   2.3e-08   3.2e-05      44     256 ..     102     307 ..      60     309 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.3e-08
                   HHHHHHHHHHTT-SEEEE--SSH..HHHH.HHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHH CS
  Peripla_BP_4  44 Qvaqiedaiakgvdgiivapvds..tala.palkkakaaGIpVvafdsddapsgerlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpn 137
                   + + +e +++ +v gii a  +   +a++ +   +++++G pVv +++    ++ +   v++d  a++  qa   ++ lg++   + ++ G  ++  
    KIR61395.1 102 ESDYVEMLLDHQVSGIIFAGGSYalAAAShDHYRRLTDRGLPVVLVNAG--IDELDFPRVSTDD-AVAVEQAYGHLRSLGHE--RIGMVLGPEDHVP 193
                   556677888888999998888886644445888999*************..9999999999995.79999999999999986..8888766555555 PP

                   HHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTTECEEEESSCCHHHCHHHHHHHTTT..TSTEEEEEES-HHHHHHHHHTTSSE CS
  Peripla_BP_4 138 aeeriegfrkvlkeypgikivaevaganwdaekaqqalealltanpldgilaandgmaegalealeaagl..agkvvvtgqDatpealeaikdGtid 232
                   ++ r  ++ + ++++ +   +   +    + e a+ a+++l  +  + g+++a+d+ a+g ++a++  gl   ++v v+g+D  + a     d  ++
    KIR61395.1 194 SR-RKLAALARIAGWRDPDECV--ERSSFSMEGARVAAAKLVDRG-VTGVICASDVVALGTIRAVRRLGLsvPDDVSVVGFD--DSAFMTCTDPPLT 284
                   54.6666677777754444433..244688999999999999998.************************844444466666..5555567777777 PP

                   EEEE--HHHHHHHHHHHHHHHHTT CS
  Peripla_BP_4 233 atvaqdpyelgyaavelavallkG 256
                    tv q+   +g+aav+l+v +++G
    KIR61395.1 285 -TVRQPIETMGQAAVDLLVTQIDG 307
                   .9999999*********9999988 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.6e-06    0.0035      13      40 ..       6      33 ..       3      44 .. 0.83
   2 ?   -3.5   0.0       8.5   1.2e+04      37      46 ..     194     203 ..     192     211 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.6e-06
                HHHHHHHTSSHHHHHHHHTTSSCSBHHH CS
       HTH_3 13 eeLAeklGvsrstisriEnGernPslet 40
                +e+A+k+Gvs +t+sr  nG+   s +t
  KIR61395.1  6 TEVARKAGVSEATVSRVLNGRGGVSEST 33
                79******************98777666 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8.5
                 BHHHHHHHHH CS
       HTH_3  37 sletlkklak 46 
                 s ++l +la+
  KIR61395.1 194 SRRKLAALAR 203
                 5555555555 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.3e-05     0.046      20      40 ..       4      24 ..       1      25 [. 0.93
   2 ?   -3.1   0.0       5.3   7.2e+03      20      29 ..     197     206 ..     194     207 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.3e-05
                BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 20 tlselArrtglpkStvhRlLq 40
                +l+e+Ar++g++ +tv+R L+
  KIR61395.1  4 RLTEVARKAGVSEATVSRVLN 24
                79****************996 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.3
                 BHHHHHHHHT CS
    HTH_IclR  20 tlselArrtg 29 
                 +l+ lAr +g
  KIR61395.1 197 KLAALARIAG 206
                 6888998887 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.9e-05     0.095      12      37 ..       6      31 ..       2      40 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.9e-05
  YdaS_antitoxin 12 kaLAealgvsqqaVsqWlkgkkqvpa 37
                    +++A++ gvs+++Vs++l+g+++v+ 
      KIR61395.1  6 TEVARKAGVSEATVSRVLNGRGGVSE 31
                    579*****************999986 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.7e-05     0.079      13      49 ..       5      40 ..       1      43 [. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.7e-05
      HTH_26 13 kseLargtgisaatlsrlvkgkpervsldtLdkiCda 49
                 +e+ar++g+s+at+sr ++g+   vs +t  ++ +a
  KIR61395.1  5 LTEVARKAGVSEATVSRVLNGR-GGVSESTRTAVLTA 40
                689******************9.46665555555555 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00011      0.15      19      40 ..       4      25 ..       3      33 .. 0.85
   2 ?   -2.0   0.1       2.5   3.4e+03       5      21 ..     195     210 ..     194     211 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
      HTH_23 19 svreIAreLgvsrrTvyrwlkr 40
                + +e+Ar+ gvs+ Tv+r+l+ 
  KIR61395.1  4 RLTEVARKAGVSEATVSRVLNG 25
                5689***************986 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.5
      HTH_23   5 reRlrillllaeGlsvr 21 
                 r++l +l   a G++ +
  KIR61395.1 195 RRKLAALARIA-GWRDP 210
                 46666666666.99876 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00017      0.24      31      49 ..       6      24 ..       5      26 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
  HTH_Tnp_ISL3 31 kavArqlgvSwtTVwrild 49
                  ++vAr  gvS+ TV r+l+
    KIR61395.1  6 TEVARKAGVSEATVSRVLN 24
                  89**************986 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1    0.0005      0.69      23      41 ..       5      23 ..       3      24 .. 0.90
   2 ?   -2.7   0.0       3.9   5.4e+03      16      31 ..      83      98 ..      82      98 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0005
      HTH_38 23 lreIArrLgrspsTIsREl 41
                l e+Ar+ g+s  T+sR l
  KIR61395.1  5 LTEVARKAGVSEATVSRVL 23
                789**************87 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.9
      HTH_38 16 llaeGlslreIArrLg 31
                l ++G++ +  Ar +g
  KIR61395.1 83 LAQRGYTPALCARTIG 98
                6689999988888876 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2    0.0012       1.6      21      36 ..       6      21 ..       3      22 .. 0.92
   2 ?    0.0   0.0      0.57   7.8e+02      16      29 ..     194     207 ..     189     216 .. 0.82
   3 ?   -3.5   0.0       7.3     1e+04      25      31 ..     255     261 ..     255     262 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0012
  HTH_AsnC-type 21 aeLAervGlSestvlr 36
                   +e+A++ G+Se+tv r
     KIR61395.1  6 TEVARKAGVSEATVSR 21
                   89************87 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.57
  HTH_AsnC-type  16 aRisyaeLAervGl 29 
                    +R+  a+LA+  G+
     KIR61395.1 194 SRRKLAALARIAGW 207
                    69999****99987 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 7.3
  HTH_AsnC-type  25 ervGlSe 31 
                    +r+GlS 
     KIR61395.1 255 RRLGLSV 261
                    799**96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2286.44
//
Query:       KIR61396.1  [L=451]
Description: sugar ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-23   81.9   8.8      8e-23   81.9   8.8    1.5  2  SBP_bac_1  Bacterial extracellular solute-binding protein
    3.4e-22   79.6   2.9    3.4e-22   79.6   2.9    1.7  2  SBP_bac_8  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   8.8   8.9e-27     8e-23      12     312 ..      59     343 ..      49     346 .. 0.82
   2 ?   -2.6   0.2      0.45   4.1e+03     232     259 ..     369     396 ..     354     417 .. 0.63

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 8.9e-27
                 HHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHT.TECTTCCTEEEEHHHHTHHHHCEEE.ES CS
   SBP_bac_1  12 alvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkay.lapgvkdaadklsssvlpkildskv.ly 108
                   v ++fe+++p+i++    +   + +  +++ +a+G+ + Dv++v  ++ a l+ + +++++++y+k+   +++vk++  k +s  +       + ly
  KIR61396.1  59 DNV-AEFERLNPDIDIDAREG-KMDPQ-TFSAKLAGGQLE-DVFYVYFTDPANLIAKRQVADISTYAKDFpVVDQVKPDLRKVFSGAD-------GkLY 146
                 557.89************886.33334.4888******99.*****444445777778*********997355555544444444433.......3788 PP

                 .EEEEE.EEEEEEETTTHHCTTGGG...SHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT....HHCSHHHHSHHH CS
   SBP_bac_1 109 .vPlya.argliYNkdlfekagldp...pwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgg....gldnpegvtaat 198
                  +P+   ++gl Y+ +lf  agldp   p+tW ++  aakk+ + g+++ +g + +s s+t+++ +++ + s gg+v+  dgg    +++++ g + ++
  KIR61396.1 147 gLPYKNySSGLLYSRPLFTRAGLDPdnpPKTWADVRVAAKKIAALGNGT-VGYGEYSKSNTGGWHFTTELYSVGGDVAVHDGGtwkaAFNSDQGRQVLN 244
                 8****77******************************************.*********************************9999999999999999 PP

                 HHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCST CS
   SBP_bac_1 199 ylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgskn 297
                 +l+++ +++      ++   ++  +a++l+l+ +G+ +m+++            +    +++++++  ++g  p+P gkg  +   g+ g++ ++++  
  KIR61396.1 245 QLKEMRWTDD-----SMGARQSLEWADLLQLMGSGKLGMYVAPADN--------IPTI-VNQYKGNFADYGLGPIPDGKGTLG---GGEGYMFNAKATP 326
                 9999997665.....999*********************9877655........3444.44445555689****998777777...9********9999 PP

                 HHH..HHHHHHHHTSHH CS
   SBP_bac_1 298 pea..AkkFldfllspe 312
                 ++     k+l+f ++++
  KIR61396.1 327 EKIraGLKWLTFWFTSA 343
                 66566777777777665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.45
                 TTSCSEEEEEHHHHHHHHCEEEEECHHC CS
   SBP_bac_1 232 aGeaamaivglwaalaamkvapkvafaa 259
                 +Geaa++ +   + +a   +++ ++f+a
  KIR61396.1 369 TGEAAATQAAADKKYANVPQKNYAPFVA 396
                 5777776666655333333344444443 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   2.9   3.7e-26   3.4e-22       4     251 ..      62     345 ..      60     364 .. 0.78
   2 ?   -0.5   0.1       0.1   8.9e+02     118     150 ..     351     383 ..     341     432 .. 0.61

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 3.7e-26
                 HHHHHH-.TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GG....GSTTHHH-HHHHHTT..--TS.----EEEEEEE- CS
   SBP_bac_8   4 kefekkt.gvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladls....dldnlddltdalaav..gydgklygvPyasetpy 95 
                 +efe  + ++++ + +       q+++a+la g++ d++ v++ +d+ a+l+++  +ad+s    d++  d++++ l++v  g dgklyg+Py  +++ 
  KIR61396.1  62 AEFERLNpDIDIDAREG--KMDPQTFSAKLAGGQLEDVFYVYF-TDP-ANLIAKRQVADIStyakDFPVVDQVKPDLRKVfsGADGKLYGLPYKNYSS- 155
                 66777777777776444..456799***********9877777.455.679999*******99988899999988888888777**********9986. PP

                 EEEEEHHHHHHS......---BHHHHHHHHHHH....HHH-SE...GG---G.GGGGGTHH........ETTEE---H..HHH.HHHHHHHHHHH..HT CS
   SBP_bac_8  96 vliynkdlleka.....edpktwdellaaakkl....kgkfgl...pdpasg.wlqaalla........kdgksldddggkdglkealellkklk..dn 171
                 +l y   l+  a     ++pktw+++  aakk+    +g +g+   +++ +g w++++ l+         dg  +++  ++d+  ++l+ lk+++  d+
  KIR61396.1 156 GLLYSRPLFTRAgldpdNPPKTWADVRVAAKKIaalgNGTVGYgeySKSNTGgWHFTTELYsvggdvavHDGGTWKAAFNSDQGRQVLNQLKEMRwtDD 254
                 999999****99999999********8879999666668889865444545349999988877666666444444433388888*********995544 PP

                 T-EE.....-S..--SSTTTTTSBSEEEE-TTHHHHHH-TTT....SEEEE.--.S--EEEEEEEEEEBTTS-HHHH.HHHHHHHHH.TTSHH CS
   SBP_bac_8 172 gkty.....dtgadavsefanGevaftingswdiaaaqkagk....klgai.vp.kqgsfaggkglavpknaknedl.aAldFlkwl.tspen 251
                    +       +ad+ +++ +G+  +++++  +i ++ ++ k    ++g + +p  +g++ gg+g++ +++a+ e++ a l++l+++ ts+e 
  KIR61396.1 255 S--MgarqsLEWADLLQLMGSGKLGMYVAPADNIPTIVNQYKgnfaDYGLGpIPdGKGTLGGGEGYMFNAKATPEKIrAGLKWLTFWfTSAER 345
                 4..333653479*****************999999988664334479999944554568999999999****************999567775 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.1
                 HHHHHHHHH-SEGG---GGGGGGTHH..ETTEE-- CS
   SBP_bac_8 118 aaakklkgkfglpdpasgwlqaalla..kdgksld 150
                 ++a+++k  +g+p p +++++aa+++  +  k+  
  KIR61396.1 351 KWAAENKLPVGIPEPQIFTGEAAATQaaA-DKK-Y 383
                 55566666666666666666666655321.111.1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3015.11
//
Query:       KIR61397.1  [L=1207]
Description: glycosyl hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-31  109.1   6.2    4.3e-22   78.6   3.3    2.8  2  F5_F8_type_C  F5/8 type C domain
    7.8e-25   87.1  16.4    2.6e-23   82.2   2.9    4.1  3  CARDB         CARDB
     0.0019   18.3   0.1        1.1    9.4   0.0    3.1  3  DUF5000       Domain of unknown function
     0.0072   16.7   4.9        4.3    7.8   0.0    5.4  6  fn3           Fibronectin type III domain
  ------ inclusion threshold ------
      0.012   15.5  20.0      0.031   14.1  12.7    3.5  3  Beta_helix    Right handed beta helix region
      0.031   13.9   0.0        6.3    6.4   0.0    2.3  2  ANAPC10       Anaphase-promoting complex, subunit 10 (APC10)
      0.087   12.8   0.0        1.2    9.2   0.0    2.5  3  Sad1_UNC      Sad1 / UNC-like C-terminal


Domain annotation for each model (and alignments):
>> F5_F8_type_C  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   3.3   1.7e-25   4.3e-22       2     127 .]      54     178 ..      53     178 .. 0.89
   2 !   30.4   0.0   1.3e-10   3.3e-07       3     127 .]     291     412 ..     289     412 .. 0.85

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 1.7e-25
                   EEESSCSSTTTGGGGGGSSSTTSSEEESSSSTTEEEEEEEEEEEEEEEEEEEECSSTT.SSEEEEEEEEEESSSSSEEEEEE.ECE.EESSSSSSSE CS
  F5_F8_type_C   2 itasseesgewpaaaaldGnkntaWsssssddkqwlqvdLgkpkkidgvvtqgrqdgg.nayvksykiqvsddgetWttvkd.ekv.pgnsdnstpv 95 
                   +tass  s+++++ +a dGn +t+W s+++  +qwlq dLg++ ++d+vv++  ++++   ++++ ++q s++g+t+tt+k+     + +  ++++v
    KIR61397.1  54 MTASSV-SQNYGPGNANDGNASTYWESANNAFPQWLQADLGSTVTVDRVVLKLPPAAAwQTRTQTLSVQGSTNGSTFTTLKAsA-GyTFDPATGNTV 148
                   699***.9***********************************************9999***********************42.234444466789 PP

                   EEEEEEEEEEEEEEEEEEEEESSSSSEEEEEE CS
  F5_F8_type_C  96 tntfdppvkaryvrltptswnggngialraEl 127
                   t+tf  ++  ryvrl++t+ n+g+  +++ E+
    KIR61397.1 149 TITFT-AAASRYVRLNVTA-NTGWPAGQVSEF 178
                   99999.9999*********.888888887775 PP

  == domain 2  score: 30.4 bits;  conditional E-value: 1.3e-10
                   EESSCSSTTTGGGGGGSSSTTSSEEESSSSTTEEEEEEEEEEEEEEEEEEEECSSTT.SSEEEEEEEEEESS.SSSEEEEEEECEEESSS..SSSSE CS
  F5_F8_type_C   3 tasseesgewpaaaaldGnkntaWsssssddkqwlqvdLgkpkkidgvvtqgrqdgg.nayvksykiqvsdd.getWttvkdekvpgnsd..nstpv 95 
                   tas    ++  +a+a d++++t+W s++     +l+v Lg+   +++vv++  +d++ +a+++++++   ++  + +t +++    +++   +++ +
    KIR61397.1 291 TASGY-VHTFMPANANDNDTATYWESNGLP--GTLTVQLGSNAAVSAVVLKLNPDSTwGARTQTVQVLGREQsASGFTGLVG---AAGYAfnPGSGN 381
                   55555.555578999999*******99988..8*************************************99789*******...333333366888 PP

                   EEEEEEEEEEEEEEEEEEEEESSSSSEEEEEE CS
  F5_F8_type_C  96 tntfdppvkaryvrltptswnggngialraEl 127
                   t+t++ +++a  vrlt t+ n+g+  +++aE+
    KIR61397.1 382 TVTIPVSATAADVRLTFTA-NSGAPGGQVAEF 412
                   9999999999*********.888788887775 PP

>> CARDB  CARDB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.4       1.2   3.1e+03      26      26 ..     121     121 ..      44     178 .. 0.58
   2 !   82.2   2.9     1e-26   2.6e-23       1     101 [.     421     521 ..     421     522 .. 0.98
   3 !   12.3   0.6     6e-05      0.15       3      84 ..     535     625 ..     533     642 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.2
                 E CS
       CARDB  26 t 26 
                 +
  KIR61397.1 121 Q 121
                 1 PP

  == domain 2  score: 82.2 bits;  conditional E-value: 1e-26
                 S--EEE..EEEC-SEEETTSEEEEEEEEEE-SSS-EEEEEEEEEETTEEEEEEEESEE-CTEEEEEEEEEE-S-S-CEEEEEEEESTT-SS--SSCCCS CS
       CARDB   1 tpDLtv.tntlnpseafvgeentitvtvkNqGtaasgatkvalyldgelvgtvtvpsLaagesttvsftwtteategevtltvvvDpdnevaEsnEtNN 98 
                 +pDLtv  ++++p+++++ +++t+++tv+N Gta+s at+v+lyl g  vgt+ v +Laag+sttvs+ + t+ ++g++ l++++D+ n v E++EtNN
  KIR61397.1 421 NPDLTVtGMSASPASPTETDAVTVSATVRNAGTATSAATNVNLYLGGVRVGTAAVGALAAGASTTVSADIGTR-AAGSYPLSAKADEANAVIEQDETNN 518
                 59****9999**************************************************************9.************************* PP

                 EEE CS
       CARDB  99 elt 101
                  +t
  KIR61397.1 519 SYT 521
                 997 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 6e-05
                 -EEE..EEEC-SEEETTSEEEEEEEEEE-SSS-..EEEEEEEEEETTEEEEEEEE........SEE-CTEEEEEEEEEE-S-S-CEEEEEEEE CS
       CARDB   3 DLtv.tntlnpseafvgeentitvtvkNqGtaa..sgatkvalyldgelvgtvtv........psLaagesttvsftwtteategevtltvvv 84 
                 DL+  ++ ++p+++++g+ +t++vt++N G+ a  sga+ ++l++  e    + v          ++ag+++      t++a+ g++t++v  
  KIR61397.1 535 DLVAsVVGWAPGNPSAGSVVTFSVTLRNAGSVAsaSGAHGITLTVLNEA--GTVVrtltgshsGVINAGATVAPVDLGTWTAANGKYTVRVAL 625
                 888888999*********************9883455555555554333..333333455666677777776543333333477888877654 PP

>> DUF5000  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0084        22       8      39 ..      73     103 ..      66     117 .. 0.79
   2 !    9.4   0.0   0.00043       1.1      25      66 ..     147     187 ..     111     213 .. 0.71
   3 ?   -1.3   0.0      0.85   2.2e+03      12      40 ..     310     338 ..     302     350 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0084
     DUF5000   8 eskltqsekgsplprvitfdlgqaaklsrfki 39 
                 +s++++s++++ +p+++  dlg+++++ r ++
  KIR61397.1  73 ASTYWESANNA-FPQWLQADLGSTVTVDRVVL 103
                 33677776665.***************99876 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00043
     DUF5000  25 tfdlgqaaklsrfkiwqregnllynsgnvkefeiwGlsnnpk 66 
                 t+ +  +a  sr++  + + n+ + +g+v efe++G +++ +
  KIR61397.1 147 TVTITFTAAASRYVRLNVTANTGWPAGQVSEFEVYG-NTSGD 187
                 55666677889*******99****************.33322 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.85
     DUF5000  12 tqsekgsplprvitfdlgqaaklsrfkiw 40 
                 ++  +++ lp ++t+ lg++a +s  +++
  KIR61397.1 310 ATYWESNGLPGTLTVQLGSNAAVSAVVLK 338
                 333345669************99987765 PP

>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.036        92      45      72 ..     114     141 ..      85     181 .. 0.88
   2 !    7.8   0.0    0.0017       4.3       2      45 ..     193     238 ..     192     270 .. 0.77
   3 ?   -1.7   0.1       1.5   3.8e+03      36      78 ..     311     354 ..     309     360 .. 0.81
   4 ?   -2.5   0.0       2.7   6.8e+03      12      40 ..     390     419 ..     386     446 .. 0.71
   5 ?    2.1   0.0     0.095   2.4e+02      17      44 ..     540     567 ..     522     591 .. 0.72
   6 ?   -2.0   0.0       1.8   4.6e+03      10      25 ..     704     721 ..     689     728 .. 0.51

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.036
                 TEEEEEECSTSSEEEEESSSTTEEEEEE CS
         fn3  45 ewneftvprtttsvtltgLkpgteYevr 72 
                 ++++ +v ++t+  t+t Lk+++ Y++ 
  KIR61397.1 114 RTQTLSVQGSTNGSTFTTLKASAGYTFD 141
                 3788889999***************995 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0017
                 CECEEEEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTS...T CS
         fn3   2 aPsnlsvsevtstsltvsWeppkdgggpitgYeveyrekgsee...e 45 
                 aP nl  ++  s +++++W+++ + +  +tgY v       ++    
  KIR61397.1 193 APANLAYTQPASGQIRLTWSAS-SDNTGVTGYDVYANGALRGSvagN 238
                 8999999999************.79999******8766655555443 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.5
                 EEEETTSTSTEEEEEECSTSS.EEEEESSSTTEEEEEEEEEEET CS
         fn3  36 eyrekgseeewneftvprttt.svtltgLkpgteYevrVqavng 78 
                 +y+e+++   + ++++ +++  s+++ +L+p+++   r q+v  
  KIR61397.1 311 TYWESNGLPGTLTVQLGSNAAvSAVVLKLNPDSTWGARTQTVQV 354
                 68888888888899998888889********9998777777765 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 2.7
                 SSSEEEEEEE-CS.SSSSTEEEEEEEEEET CS
         fn3  12 tstsltvsWeppk.dgggpitgYeveyrek 40 
                 t+  +++++++ +  +gg++  ++v   + 
  KIR61397.1 390 TAADVRLTFTANSgAPGGQVAEFQVIGVPA 419
                 556788899999999999999999875555 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.095
                 EEEEE-CSSSSSTEEEEEEEEEETTSTS CS
         fn3  17 tvsWeppkdgggpitgYeveyrekgsee 44 
                 +v W p ++  g+++ ++v++r+ gs  
  KIR61397.1 540 VVGWAPGNPSAGSVVTFSVTLRNAGSVA 567
                 589*****9**************99876 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 1.8
                 EE.SSSEEEEEEE-CS.S CS
         fn3  10 ev.tstsltvsWeppk.d 25 
                 ++ ++++l+ +++ p+ +
  KIR61397.1 704 TRaSTNTLVTRFSIPDaP 721
                 222455555555555555 PP

>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.9   4.9e+03      65      85 ..     215     238 ..     134     260 .. 0.57
   2 ?   14.1  12.7   1.2e-05     0.031      54     131 ..     950    1039 ..     890    1052 .. 0.74
   3 ?    9.5   2.6   0.00031       0.8      34     146 ..    1011    1153 ..     998    1207 .] 0.72

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.9
                 E---...SEEE-TT--S--EEES- CS
  Beta_helix  65 sdnn...gggialfgasnnlienn 85 
                 sdn+   g+ ++++ga +  + +n
  KIR61397.1 215 SDNTgvtGYDVYANGALRGSVAGN 238
                 222233344444444444444444 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.2e-05
                  T...-S-EEES-EEE---SEEE-TT.--S--EEES-EEES-SS-SEE-TT...-S--EEES-EEESTT......--SEE---TT---EEES CS
  Beta_helix   54 s...snntisnntisdnngggialf.gasnnlienneitdnggsGiylny...ssnntienNiidnna......gsGividdsssnvtvtn 131 
                  +   ++ ti+n++i++  ++g++++ g+ nnl++nn+ + +g++ + l++   +   ++++N+ +n +      ++G+ ++ +  ++t++n
  KIR61397.1  950 GantDYMTIKNSRIRNMFADGVNMTnGSTNNLVSNNDARATGDDSFALFSaidAGGADMKDNVYENLTstltwrAAGVAVYGGY-GNTFRN 1039
                  334488999999999999999999988889999999999999998888874556669999999998889999999999999988.666665 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00031
                  .EEES..-EEES-SS-SEEE-TT-S-EEES-EEE---............SEEE-TT.--S--EEES-EEES-SS-........SEE-TT-S-....- CS
  Beta_helix   34 vvien..neiannsgsGiyilgssnntisnntisdnn............gggialf.gasnnlienneitdnggs........Giylnyssn....n 103 
                  +v en  +++++ +  G++++g+ +nt++n +i d              g+ ++ f ++ ++ +en  i + gg+         i+++++s     +
  KIR61397.1 1011 NVYENltSTLTW-RAAGVAVYGGYGNTFRNIYIADTLvysgitissldfGYPMNGFgANPPTRFENISIVRAGGHfwgaqtfpAIWVFSASKvfqgI 1106
                  344444345555.********************8877888888999988888999977788899999999998888888888866666644444446 PP

                  EEES-EEESTT--SEE---TT....---EEES-EEES-SSEEEE-TT CS
  Beta_helix  104 tienNiidnnagsGividdss....snvtvtnNtitnnkgaGiavvg 146 
                  ++++  i + + sGi ++ +     +++ vt+ ++tn ++ G+   g
  KIR61397.1 1107 RVSDVDIVDPTYSGIMFQTNYvggqPQFPVTDTVFTNISISGARRSG 1153
                  66666666666667666666666666666666666666655554443 PP

>> ANAPC10  Anaphase-promoting complex, subunit 10 (APC10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0067        17      26      79 ..      49     103 ..      18     134 .. 0.86
   2 ?    6.4   0.0    0.0025       6.3      37      80 ..     296     338 ..     263     345 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0067
     ANAPC10  26 gkeavwsvsSakpgngvellrddnldtyWqs.dgsqPHlvniqfqkktevkaval 79 
                 g +a+++ sS+ +  g  +  d n  tyW s + + P   +  +   ++v  v+l
  KIR61397.1  49 GISATMTASSVSQNYGPGNANDGNASTYWESaNNAFPQWLQADLGSTVTVDRVVL 103
                 567999***********************98467889999999999999999886 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0025
     ANAPC10  37 kpgngvellrddnldtyWqsdgsqPHlvniqfqkktevkavaly 80 
                  + +  ++  d++  tyW s+g +P +  +q+     v+av+l 
  KIR61397.1 296 VHTFMPANANDNDTATYWESNG-LPGTLTVQLGSNAAVSAVVLK 338
                 5555556678999********9.799*************99985 PP

>> Sad1_UNC  Sad1 / UNC-like C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00046       1.2      29     131 ..      86     183 ..      71     184 .. 0.81
   2 ?   -0.1   0.0      0.33   8.5e+02      22     118 ..     313     405 ..     302     417 .. 0.76
   3 ?   -2.2   0.0       1.6     4e+03     120     131 ..     857     868 ..     854     869 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00046
                 EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESSTT---.-EEEEEEE--TTS-SEEEEE--TT----EEEEEEEE--BSS-SSEEEESEE CS
    Sad1_UNC  29 gfvvieLseeiiveavtlehveksvapisSapKdfevsgskrypekk.wvllgefsydedgknaqtFeleeskdilvkyvkleilsnyGneeytclyrl 126
                 +++  +L  +++v+ v l+  +   a  ++  ++ +v+gs+++++ +  +  + +++d  + n+ t ++      + +yv+l+++ n G +    ++ +
  KIR61397.1  86 QWLQADLGSTVTVDRVVLKLPPA--AAWQTRTQTLSVQGSTNGSTFTtLKASAGYTFDPATGNTVTITFTAA---ASRYVRLNVTANTGWP-AGQVSEF 178
                 58889999999999999999999..6699999999*****99998854444455566666555556666555...69*************9.899**** PP

                 EEEEE CS
    Sad1_UNC 127 rVyGt 131
                 +VyG+
  KIR61397.1 179 EVYGN 183
                 ****7 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.33
                 EEEESS-EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESSTT----EEEEEEE--TTS-SEEEEE--TT----EEEEEEEE--BSS-S CS
    Sad1_UNC  22 wsfkgsrgfvvieLseeiiveavtlehveksvapisSapKdfevsgskrypekkwvllgefsydedgknaqtFeleeskdilvkyvkleilsnyGne 118
                 w  +g  g+++++L  +  v+av l+  +   +      ++++v+g +++ +    l+g   y+ +  +  t ++  s+  ++  v+l ++ n G++
  KIR61397.1 313 WESNGLPGTLTVQLGSNAAVSAVVLKLNPD--STWGARTQTVQVLGREQSASGFTGLVGAAGYAFNPGSGNTVTIPVSA--TAADVRLTFTANSGAP 405
                 566677789999999999999999987777..33666667777777777776668999999998777777788888887..8888888888888766 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.6
                 EEEESEEEEEEE CS
    Sad1_UNC 120 ytclyrlrVyGt 131
                 y + ++++VyG+
  KIR61397.1 857 YSTASKFQVYGK 868
                 8899*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.47
# Mc/sec: 7736.72
//
Query:       KIR61398.1  [L=338]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-20   72.9   0.0    4.3e-20   72.3   0.0    1.3  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
    1.6e-17   63.3   1.0    2.5e-17   62.7   0.2    1.8  2  HisKA          His Kinase A (phospho-acceptor) domain
     0.0089   15.9   0.0      0.014   15.2   0.0    1.2  1  HATPase_c_3    Histidine kinase-, DNA gyrase B-, and HSP90-li
  ------ inclusion threshold ------
      0.019   14.9   0.2      0.058   13.4   0.2    1.8  1  HATPase_c_2    Histidine kinase-like ATPase domain
      0.029   13.9   2.3       0.26   10.8   0.1    2.1  2  Lactamase_B_5  Metallo-beta-lactamase superfamily
       0.07   13.0   0.0       0.13   12.1   0.0    1.4  1  HATPase_c_5    GHKL domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   1.4e-23   4.3e-20       3     110 ..     226     337 ..     224     338 .] 0.90

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 1.4e-23
                 HHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCS.TTCH....HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEE CS
   HATPase_c   3 ekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfe.kfsq....ddstkrggggtGlGlsivkklvelmgGeiwves 96 
                 e+ L +++snl+ N+v++++++g++++    + d +++ v+D+  Gip+edl+++f+ +f        +++ +ggg GlGl+iv+ lve +gG++ v  
  KIR61398.1 226 ERELARVVSNLLINSVRYTPEDGTVHIAAGHERDAVWLAVSDTCGGIPEEDLDRVFDvAFRGerarTPGAAGSGGGGGLGLAIVRGLVEAHGGRVDV-R 323
                 68899*************7777777777774449***********************99999888878888889***********************.7 PP

                 ETTTEEEEEEEEES CS
   HATPase_c  97 epgrGttftftlpl 110
                 + grG++f ++lp 
  KIR61398.1 324 NTGRGCQFEVRLPA 337
                 778********995 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.2   8.3e-21   2.5e-17       2      67 .]     113     179 ..     112     179 .. 0.96
   2 ?   -3.9   0.0       5.1   1.5e+04      47      59 ..     225     237 ..     222     238 .. 0.73

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 8.3e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC...T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkre.gklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 +++++a v+H+LrtPL++++++aeaL+++ ++ +  + ey ++i+ e++r+++lv+dl +lsri ag
  KIR61398.1 113 RRELVAWVSHDLRTPLAGLRAMAEALEDRiIDDPATVDEYHRRIRVETDRMTQLVDDLFELSRINAG 179
                 689***************************8888******************************987 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 5.1
                 HHHHHHHHHHHHH CS
       HisKA  47 earrldhlvedlL 59 
                 ++r l ++v++lL
  KIR61398.1 225 GERELARVVSNLL 237
                 6778888888887 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.6e-06     0.014       5      79 ..     231     306 ..     227     314 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.6e-06
  HATPase_c_3   5 kAlaelvdNsld..AdaenvkievnknrgktgeivieDdGkGmseeelknalrlatsskeakr..kstslGkkGiGlkl 79 
                   ++  l+ Ns+    +  +v+i + ++r ++  + + D + G++ee+l++++ +a   ++a++   + s G  G+G  l
   KIR61398.1 231 RVVSNLLINSVRytPEDGTVHIAAGHER-DAVWLAVSDTCGGIPEEDLDRVFDVAFRGERARTpgAAGSGGGGGLG--L 306
                  5777888888663356667999999987.6899********************99988775432122233333333..5 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   1.9e-05     0.058      14     111 ..     209     315 ..     199     331 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
  HATPase_c_2  14 vaeavlrraglseelldeirla..veEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep..........keslkegG 99 
                   ++ v++ +g++  ++ e +la  v+ +++N v++  +   +g+v++++ ++ +a+ + v+D   g + e+l++    +           ++s+  gG
   KIR61398.1 209 RIHLVAADSGWPLVRAGERELArvVSNLLINSVRYTPE---DGTVHIAAGHERDAVWLAVSDTCGGIPEEDLDRVFDVAFrgerartpgaAGSGGGGG 303
                  55555555666666666555543377788888888776...68899999999999999999976665555444333322256688888889******* PP

  HATPase_c_2 100 rGlalikglvDe 111
                  +Gla+++glv+ 
   KIR61398.1 304 LGLAIVRGLVEA 315
                  *********986 PP

>> Lactamase_B_5  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.4     0.023        69     125     176 ..       5      56 ..       2      70 .. 0.91
   2 ?   10.8   0.1   8.6e-05      0.26     141     197 ..     176     234 ..     156     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.023
  Lactamase_B_5 125 llleettlitgdlvrakkagsltllpdekllnreeavasvrrlaalekieav 176
                    ll+   +l++g +v    ag+l ll    +l +  ++ +v  la +  + +v
     KIR61398.1   5 LLIGLYALVAGGVVGLAGAGALRLLRGRSILVHVLVLLTVTVLAVVVGVATV 56 
                    6777789*************************************99999988 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 8.6e-05
  Lactamase_B_5 141 kkagsltllpdek.lln.reeavasvrrlaalekieavlvgdgwsvfrdgsdrlkelaa 197
                     +ag+l l p    l++  ++a+a v  laa  +i+ v    gw++ r g++ l  +++
     KIR61398.1 176 INAGALRLAPTTVpLRDvVSDAIAGVAPLAARRRIHLVAADSGWPLVRAGERELARVVS 234
                    468888888876425552479******************************99988776 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.5e-05      0.13       4      98 ..     227     333 ..     225     336 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.5e-05
  HATPase_c_5   4 ldlcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg................ekkklesskskkeehGiGlksireivkkykgnl 85 
                   +l ++++nlL    ++++ ++e +  +++ +  + +++ + ++ ++ g                e  + +    +++  G+Gl  +r +v+ ++g +
   KIR61398.1 227 RELARVVSNLLI---NSVRYTPE-DGTVHIAAGHERDAVWLAVSDTCGGipeedldrvfdvafrgERARTPGAAGSGGGGGLGLAIVRGLVEAHGGRV 320
                  578999999995...56778885.99*********************9999999998888877666566777788899******************** PP

  HATPase_c_5  86 sieaedglFtlsv 98 
                  ++++  +  + +v
   KIR61398.1 321 DVRNTGRGCQFEV 333
                  9988776555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1177  (0.0656478); expected 358.6 (0.02)
Passed bias filter:                      633  (0.0353059); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2501.58
//
Query:       KIR61399.1  [L=213]
Description: SAM-dependent methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-07   31.3   0.3    7.8e-06   26.5   0.3    2.4  1  Methyltransf_11  Methyltransferase domain
    5.2e-07   30.3   0.1    1.1e-06   29.2   0.1    1.6  1  Methyltransf_25  Methyltransferase domain
      8e-06   25.7   0.0    1.4e-05   25.0   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
    1.9e-05   25.4   0.2    0.00037   21.2   0.2    2.2  1  Methyltransf_12  Methyltransferase domain
    0.00052   19.9   0.0     0.0016   18.3   0.0    1.6  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.043   13.4   0.1      0.076   12.6   0.0    1.4  2  MTS              Methyltransferase small domain
        0.2   11.2   0.0       0.31   10.6   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
       0.35   10.2   0.2       0.48    9.8   0.2    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.3   3.5e-09   7.8e-06       1      94 [.      59     147 ..      59     149 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 3.5e-09
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-T.T-EEEEEEES-CCC-.CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfed.nsfDlvvssevlhhv.edpekalkeiaRvLkpgG 92 
                      LdvGcG Grl+ al  +g+  +g+D+s+++++la+ ++  +      ++ d+ + p++  +     ++      +  dp+++l+ ++R+L  +G
       KIR61399.1  59 LDVGCGPGRLTGALIAAGRPALGIDISATAVRLARGRGAVA------LQRDVFD-PVPGtGRWQHLLLADGNIGIgGDPHRLLRRCRRLLTADG 145
                      8******************************9998776654......6666666.333323444444444333334699999999999999999 PP

                      EE CS
  Methyltransf_11  93 ll 94 
                      +l
       KIR61399.1 146 RL 147
                      87 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1     5e-10   1.1e-06       2      97 .]      59     145 ..      58     145 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 5e-10
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BSSSTTTEEEEEEEST.GGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaed.lpfedgsfDlvvssga.lhhlsdedlekalkeiarvL 93 
                      Ld+GcG+Grlt al +++     +g+Dis+++++ ar r       +  +q d+ d +p    +    +++ + + +    d +++l++++r+L
       KIR61399.1  59 LDVGCGPGRLTGALIAAG--RPALGIDISATAVRLARGRG------AVALQRDVFDpVPGTG-RWQHLLLADGnIGIGG--DPHRLLRRCRRLL 141
                      9***************95..99****************99......3445555544166555.4444444455477655..5568899999998 PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      + +G
       KIR61399.1 142 TADG 145
                      8777 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   6.1e-09   1.4e-05       7      47 ..      58      95 ..      55     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 6.1e-09
  Methyltransf_31  7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielAren 47
                      lD+GCG G+lt +l    +      GiDis++a++lAr +
       KIR61399.1 58 TLDVGCGPGRLTGALIAAGR---PALGIDISATAVRLARGR 95
                     79**************5444...499*************96 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   1.7e-07   0.00037       1      99 []      59     147 ..      59     147 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.7e-07
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvas.nvlhhlkdirevldnirklL 93 
                      L++GcG G+l+ al ++  +   +g+Dis+ a+     +la+ ++  + + ++++   +     + +   +++ + +    d++++l+++r+lL
       KIR61399.1  59 LDVGCGPGRLTGALIAA--GRPALGIDISATAV-----RLARGRGAVALQRDVFDPVPGT----GRWQHLLLAdGNIGIGGDPHRLLRRCRRLL 141
                      8****************..**************.....6666666444444444444333....356555555377777799999999999999 PP

  Methyltransf_12  94 kpgGrl 99 
                      + +Grl
       KIR61399.1 142 TADGRL 147
                      999986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   7.3e-07    0.0016      26     117 ..      58     149 ..      47     160 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.3e-07
  Methyltransf_23  26 vLdiGcGtGillevlrengfsvtgvDlspeaveiae..kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvp.dppellrqiatllkpgGyll 116
                       Ld+GcG G+l+  l + g    g+D+s  av +a+  +a   q d f   +  +  g+++   l ++   +  dp++llr+ ++ll  +G+l 
       KIR61399.1  58 TLDVGCGPGRLTGALIAAGRPALGIDISATAVRLARgrGAVALQRDVF---DPVPGTGRWQHLLLADGNIGIGgDPHRLLRRCRRLLTADGRLH 148
                      69*************9*******************9997777777777...6667788888777777766666688888888888888888876 PP

  Methyltransf_23 117 l 117
                       
       KIR61399.1 149 A 149
                      5 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.4e-05     0.076      28      73 ..      51      94 ..      31     104 .. 0.77
   2 ?   -3.6   0.0       3.1   6.9e+03     119     135 ..     131     147 ..     131     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.4e-05
                HCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHH CS
         MTS 28 pkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesake 73
                 ++ +g  lD+GcG G l+ al ++        +d++a A+++a+ 
  KIR61399.1 51 LARCTGPTLDVGCGPGRLTGALIAAGRP--ALGIDISATAVRLARG 94
                44456779********997666554444..4789*******99985 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.1
                 HHHHHHHHHHEEEEEEE CS
         MTS 119 eeliaeAkeaLkegGeL 135
                 ++l++  ++ L+ +G+L
  KIR61399.1 131 HRLLRRCRRLLTADGRL 147
                 5789999999*999998 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00014      0.31      17      64 ..      58     104 ..      49     108 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00014
        MetW  17 vldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqgdl 64 
                  ld+GcG G l   l    +  + G+++++++v  +  +G   +q d+
  KIR61399.1  58 TLDVGCGPGRLTGALIA-AGRPALGIDISATAVRLARGRGAVALQRDV 104
                 69**********99966.7889**************999999988886 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00021      0.48     165     201 ..      58      93 ..      48      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00021
        PrmA 165 vlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvak 201
                  lDvG+G G L+ a +  + + ++++Di   Av+ a+
  KIR61399.1  58 TLDVGCGPGRLTGA-LIAAGRPALGIDISATAVRLAR 93 
                 69*********855.45555799***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       189  (0.0105416); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1424.02
//
Query:       KIR61400.1  [L=219]
Description: glycosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-16   59.1   0.0    6.3e-16   58.7   0.0    1.1  1  Glycos_transf_2  Glycosyl transferase family 2
  ------ inclusion threshold ------
       0.15   12.6   0.0       0.32   11.5   0.0    1.6  1  Glyco_tranf_2_4  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0     7e-20   6.3e-16       1     164 [.       3     152 ..       3     157 .. 0.79

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 7e-20
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SS..EEEEEESSEEE CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgd..yilflDaDdep 92 
                      +vv p+ Ne++ l+ +l++  a      ++ ivvD+gStD+++e++++      +  vi   e  G+++a+ ag+ aa+    +++++DaD  +
       KIR61400.1   3 DVVLPCRNEAPALPDLLARMPA-----GYRPIVVDNGSTDGSAEVARAC-----GAEVISVAEP-GYGAAVHAGVLAADPGdgVVCVMDADGSF 85 
                      69****************6666.....5*********************.....9*******99.*************9666************ PP

                      -TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEH CS
  Glycos_transf_2  93 dpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrre 164
                      dp  l++l+++  +++a   lg+ +r++  ++ ++ + r    + +  ++ +r+++ +++++ +  a+ rr 
       KIR61400.1  86 DPAQLPRLADPVLAGEA--HLGTGRRRPAARGVWPAHAR--VANAVLARRLRRTTGLDIHDIGPIRAV-RRA 152
                      **************999..55555555555555555544..456666666666665555555544444.443 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.6e-05      0.32       1      40 [.       9      46 ..       9      85 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.6e-05
  Glyco_tranf_2_4  1 rneadiLpeflahhlalgfdrilvydndstDgtrailkel 40
                     rnea++Lp  la    +g++  +v+dn+stDg++++ ++ 
       KIR61400.1  9 RNEAPALPDLLARM-PAGYR-PIVVDNGSTDGSAEVARAC 46
                     89999999999988.55566.7899**********99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1574.45
//
Query:       KIR61401.1  [L=349]
Description: NAD-dependent dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-45  154.4   3.2    2.5e-44  151.6   3.2    1.9  1  Epimerase        NAD dependent epimerase/dehydratase family
      1e-34  120.5   0.0    1.8e-17   63.7   0.0    2.9  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.2e-14   54.0   0.0    3.9e-12   45.8   0.0    2.1  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    8.3e-11   42.1   1.6    8.3e-11   42.1   1.6    1.8  2  NAD_binding_10   NAD(P)H-binding
    1.5e-08   34.1   1.1    0.00095   18.3   0.2    2.1  2  RmlD_sub_bind    RmlD substrate binding domain
    3.1e-07   29.8   0.0    0.00031   20.0   0.0    2.5  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
      7e-07   28.7   0.0    0.00046   19.4   0.0    2.3  2  NAD_binding_4    Male sterility protein
    6.5e-06   25.7   0.6       0.01   15.3   0.3    2.4  2  adh_short        short chain dehydrogenase
    2.9e-05   23.7   0.1      7e-05   22.5   0.1    1.7  1  NmrA             NmrA-like family
    0.00026   20.6   0.1       0.18   11.3   0.0    2.5  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
      0.017   15.4   0.2      0.037   14.3   0.2    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.028   15.0   1.9      0.029   14.9   0.5    1.7  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
       0.13   12.2   4.8       0.45   10.5   1.9    2.4  2  Glyco_transf_4   Glycosyltransferase Family 4
       0.25   11.2   3.6        1.6    8.6   3.2    2.5  2  KR               KR domain


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.6   3.2   1.9e-47   2.5e-44       1     241 []       4     279 ..       4     279 .. 0.91

  Alignments for each domain:
  == domain 1  score: 151.6 bits;  conditional E-value: 1.9e-47
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC....EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl....elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgt 95 
                 +lVtG++GfiG+++v al ++g++v+++d    + ++  l+d+     lv+ldl+dr a++ +++  ++d+v+h Aa  g ++  +d  +++  n  g+
  KIR61401.1   4 VLVTGGAGFIGTHVVTALHDAGHRVTVVDAGHPGAHRLPLPDTvagaPLVRLDLRDRPAVAGVLA--GVDVVVHQAAMVGLGVDLDDLPEYVGCNDLGS 100
                 79*****************************9998888888889*********************..9*********99999999999999******** PP

                 HHHHHHHHHHTCTEEEEEEEGGGGT....................................SCSSSS..BSTCSTTS----SSHHHHHHHHHHHHHHHH CS
   Epimerase  96 lnlleaarkagvkrllflsSsevYG....................................kdaeqp..keettltgplkpnspYaaaKlageklveay 156
                   ll a+ +agv+rl+ +sS  vYG                                    ++  +p   +e++   pl p+s Yaa+K+a e+l+  +
  KIR61401.1 101 AVLLAAMARAGVHRLVLASSMVVYGegayacaghgavrpaprsvadlaaghfepvctscgaAV--TPglVDEEA---PLDPRSVYAATKVAQEHLTAVW 194
                 *****************************************************9998764333..355567777...9********************* PP

                 HHHHT-EEEEEEESEEESTTS-TTS.TTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 157 aaqyglnaiilrlfnlyGprngege.vsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 a+q g  +++lr+ n+yGp+ + ++  s+v + + + + +g+    ++ dg ++Rdf++v+Dva a+l++le+  +    ++yn++
  KIR61401.1 195 ARQTGGTVVALRYHNVYGPGMPRDTpYSGVAAIFRSALEAGR-APRVFEDGGQRRDFVHVRDVAAANLAALEATGTRTGWRAYNVA 279
                 ********************5555538888887777777788.*****************************95554444588875 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   4.5e-17   5.8e-14       1     135 [.       5     126 ..       5     143 .. 0.88
   2 !   63.7   0.0   1.4e-20   1.8e-17     141     331 ..     168     341 ..     159     342 .. 0.80

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 4.5e-17
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG+aGfiG +++  L + g++v++++  +    ++r+  l +           l++ Dl+D+ ++  +la v  d v++ AA+   +v +++  
     KIR61401.1   5 LVTGGAGFIGTHVVTALHDAGHRVTVVDAGHPG--AHRL-PLPDTV-----AGAPLVRLDLRDRPAVAGVLAGV--DVVVHQAAMVGLGVDLDDLP 90 
                    9***********************998765554..4455.343322.....3568******************9..9****************999 PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGk 135
                    +++ +n lG + LL a+ ++g+    r++ aS+  vYG+
     KIR61401.1  91 EYVGCNDLGSAVLLAAMARAGV---HRLVLASSMVVYGE 126
                    99999***************98...5************8 PP

  == domain 2  score: 63.7 bits;  conditional E-value: 1.4e-20
                    B-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS-TTSCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHH CS
  GDP_Man_Dehyd 141 qtEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhesprrgetfvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlm 236
                    ++E+ p++Prs Yaa+K+++++++  + ++ g  +v  ++ n ++p + ++ +   +  +   +++  +   ++ ++ ++Rd+ hv+D++ a  ++
     KIR61401.1 168 VDEEAPLDPRSVYAATKVAQEHLTAVWARQTGGTVVALRYHNVYGPGMPRDTPYSGVAAIFRSALEAGRAPRVFEDGGQRRDFVHVRDVAAANLAA 263
                    69*************************************************99999988777766655566668******************9999 PP

                    HHCSS-....--EEE-TT-EEECHHCHHCCHHCCCHHHHHH............TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHH CS
  GDP_Man_Dehyd 237 lqqdkp....edyviatgethsvrefvelaflelgktiewegkgeeevgrakesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeel 328
                    l++  +    + y++a+g+  +v+++++  + +                     g    +v    fr g+v+ +++ +++a+ eLg+++ v++ ++
     KIR61401.1 264 LEATGTrtgwRAYNVASGRPATVGQLATELARA--------------------AGG-PPPVVTGEFRLGDVRHVVASPARAEAELGFRAAVGLADG 338
                    997543111134444444444444444322222....................233.24556689******************************9 PP

                    HHH CS
  GDP_Man_Dehyd 329 vre 331
                    ++e
     KIR61401.1 339 ITE 341
                    987 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   3.1e-15   3.9e-12       1     123 [.       5     127 ..       5     139 .. 0.85
   2 !    6.3   0.0    0.0032       4.2     139     229 ..     173     264 ..     157     303 .. 0.69

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 3.1e-15
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespel.leelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvag.kltedeimkvnvkGTr 97 
                 +vtGgaGF+G ++v +L ++++   v v+D  +     l    +v  + ++  D++d + +  +l gvdvv+h a++v +    +   e+   n  G  
  KIR61401.1   5 LVTGGAGFIGTHVVTALHDAGH--RVTVVDAGHPGAHrLPLPDTVAGAPLVRLDLRDRPAVAGVLAGVDVVVHQAAMVGLGVdLDDLPEYVGCNDLGSA 101
                 69*******************5..99****87755440455566666669*************************999987734455679999999*** PP

   3Beta_HSD  98 nvleacvkagvrvlvYtSsaevvgpn 123
                  +l+a  +agv++lv  Ss+ v g+ 
  KIR61401.1 102 VLLAAMARAGVHRLVLASSMVVYGEG 127
                 ********************999884 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0032
   3Beta_HSD 139 eslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdkllvp......llkqlaklglalfkigdeevlsdrvYvgNvawahilAa 229
                 +  + ++y+ +K   E+l         + gg    +aLR   +yG+g ++ +p       ++ ++  g a     d  +  d+v v  va a + A 
  KIR61401.1 173 PLDPRSVYAATKVAQEHLTAVWAR---QTGG--TVVALRYHNVYGPGMPRDTPysgvaaIFRSALEAGRAPRVFEDGGQRRDFVHVRDVAAANLAAL 264
                 555777888888887776544333...3443..458***********98754411111145556666666556666667778888888888877665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   1.6   6.5e-14   8.3e-11       1     104 [.       8     126 ..       8     141 .. 0.80
   2 ?   -2.6   0.1       3.3   4.2e+03     158     182 ..     242     265 ..     231     267 .. 0.68

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 6.5e-14
                     TTTSHHHHHHHHHHHHC-T-EEEEE.ETT..HHHCHHHHCT.TTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC.....HHHH......... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtal.vRn..peklaeleae.eglevvegdvtdvedlaealkgadaVvsalggggk.....deeg......... 77 
                     G+ G +G ++v+ l ++ gh+vt++ + +  +++l+ l+++ +g+ +v +d+ d  ++a +l+g+d+Vv  ++  g      d            
      KIR61401.1   8 GGAGFIGTHVVTALHDA-GHRVTVVdAGHpgAHRLP-LPDTvAGAPLVRLDLRDRPAVAGVLAGVDVVVHQAAMVGLgvdldD--Lpeyvgcndl 98 
                     99***************.59*998854443356777.676669************************9998844443344441..2445666666 PP

                     .HHHHHHHHHHCT--EEEEEEETTTTSG CS
  NAD_binding_10  78 .aknivdaakeagvkRfvlvsaigvgde 104
                       + +++a+ +agv R+vl s++ v+ e
      KIR61401.1  99 gSAVLLAAMARAGVHRLVLASSMVVYGE 126
                     69999******************99864 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.3
                     ETTSS----EEEHHHHHHHHHHHCT CS
  NAD_binding_10 158 ekgepfkggsisradVAdvlvavld 182
                     e+g + ++  +  +dVA++ +a+l+
      KIR61401.1 242 EDGGQ-RRDFVHVRDVAAANLAALE 265
                     44444.3446888999999998886 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.2   7.4e-07   0.00095       2     105 ..       3     124 ..       1     151 [. 0.86
   2 !   14.9   0.0   8.6e-06     0.011     114     233 ..     169     299 ..     157     322 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.4e-07
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre...................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavn 78 
                    ++lvtG+ G +G++++ +l+ +g+ v+ ++                     +ldl+d+ ava +l+    dvvv+ AA        ++  +    n
     KIR61401.1   3 HVLVTGGAGFIGTHVVTALHDAGHRVTVVDAGhpgahrlplpdtvagaplvRLDLRDRPAVAGVLAG--VDVVVHQAAMVGLGVDLDDLPEYVGCN 96 
                    59***************************98899*******************************98..899******998877777777888888 PP

                    THHHHHHHHHHHHCT-E.EEEEEEGGGS CS
  RmlD_sub_bind  79 aeavealAeaaaavgal.LihvStDyVF 105
                      +++ l +a a++g++ L+  S+  V+
     KIR61401.1  97 DLGSAVLLAAMARAGVHrLVLASSMVVY 124
                    8888888777777777536666665554 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 8.6e-06
                    -TTS----SSHHHHHHHHHHH..HHHH..H-SSEEEEEE-SEESS.....SSS-HHHHHHHHH.HH-SEEEEESS..-EE--EEHHHHHHHHHHHH CS
  RmlD_sub_bind 114 eeddetsPlnvYGrtKlaGEq..avla..agkkalivRtswvyge.....kgknfvktmlrla.kereelkvvaD..qlgsPTsardlAevllqll 197
                     e+++ +P++vY++tK+a E+  av a  +g +++ +R   vyg      +  + v+ ++r a +     +v++D  q +   ++rd+A++ l++l
     KIR61401.1 169 DEEAPLDPRSVYAATKVAQEHltAVWArqTGGTVVALRYHNVYGPgmprdTPYSGVAAIFRSAlEAGRAPRVFEDggQRRDFVHVRDVAAANLAAL 264
                    588999**************8333433337889999*******987776666677888998885666677999998899999*********99999 PP

                    HHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHCH CS
  RmlD_sub_bind 198 ekaaeekelagvyHlanegetswlefArailkeaga 233
                    e+    ++ ++ y +a+ + ++  ++A + +++ag 
     KIR61401.1 265 EATGT-RTGWRAYNVASGRPATVGQLATELARAAGG 299
                    99986.5669*****999999999999999888775 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.4e-07   0.00031       1     128 [.       4     120 ..       4     121 .. 0.88
   2 !    7.2   0.0    0.0019       2.4     133     245 ..     175     295 ..     169     305 .. 0.65

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.4e-07
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      vlvtG++G iG ++v+ +     +++ +++      +++      +++   l      v  d+rd+  ++ +l   +vdvv+h AA+  + +  
       KIR61401.1   4 VLVTGGAGFIGTHVVTALH-DAGHRVTVVDAGHPGAHRLPLPD--TVAGAPL------VRLDLRDRPAVAGVLA--GVDVVVHQAAMVGLGVDL 86 
                      89***********998765.566899999*9999999988754..4444444......3479************..***************999 PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieagvkkvvliSt 128
                          e +  N lg+  ++ a  +agv+++vl S+
       KIR61401.1  87 DDLPEYVGCNDLGSAVLLAAMARAGVHRLVLASS 120
                      9*****************************9985 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0019
                      S--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETTG.......TTSSHHHHHHHHHTT.SSEEES-TT-EEEEE-HHH..HHHHH.HH CS
  Polysacc_synt_2 133 nPtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlgS.......rGSviplFkkqikeg.gpvtvTdpemtRyfmtiee..avqLv.lq 215
                      +P +v+ atK ++e l+   a+++     ++v+ R+ NV g           v  +F++ +++g  p    d    R f+ +++  a++L  l+
       KIR61401.1 175 DPRSVYAATKVAQEHLTAVWARQT---GGTVVALRYHNVYGPgmprdtpYSGVAAIFRSALEAGrAPRVFEDGGQRRDFVHVRDvaAANLAaLE 265
                      799*************99999998...78899*******9842221111234667777777777334444455556666666653233342134 PP

                      HHHH--SS-EEEE--.-EEEHHHHHHHH.. CS
  Polysacc_synt_2 216 alalakggeifvldmGepvkivdlakalie 245
                      a+ + +g   + +  G p ++ +la++l +
       KIR61401.1 266 ATGTRTGWRAYNVASGRPATVGQLATELAR 295
                      444445555666666666666666666665 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.2    0.0028       3.6       1      23 [.       6      28 ..       6      35 .. 0.83
   2 !   19.4   0.0   3.6e-07   0.00046      84     254 ..      66     257 ..      54     260 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0028
                   EE-TTSHHHHHHHHHHHHHS-.T CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpev 23
                   +TG+ GF+G++++  L +   +v
     KIR61401.1  6 VTGGAGFIGTHVVTALHDAGHRV 28
                   7************9997766654 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 3.6e-07
                    HHHH--EEEE--SS-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H....................... CS
  NAD_binding_4  84 laeevdviihsaAtvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeege.................... 156
                    + + vdv++h aA v +  ++++    +  N +G   +l   ++    + l+  S+ +v+ge   +         +                    
     KIR61401.1  66 VLAGVDVVVHQAAMVGLGVDLDDlpeYVGCNDLGSAVLLAAMARAGV-HRLVLASSMVVYGEGAYACAG------Hgavrpaprsvadlaaghfep 154
                    5678************9876655333899999998777664443333.479999998877777755422......1224455678899******** PP

                    .........HHH--EEEETTTCCCHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEE--SSST---TTSHHHHHHHHHHHH-EEES-SB---TT-- CS
  NAD_binding_4 157 ......keekldederaklkglpntYeqsKalaEklvrearrrsglpvvivRpsiitgesktGwingsdlgirgllgliakgvlpeilgdkeavld 246
                           +++    +++   +    Y  +K++ E+l   ++r+ g  vv +R  +++g  ++  +  s  +++ + ++ + g+ p++++d  ++ d
     KIR61401.1 155 vctscgAAVTPGLVDEEAPLDPRSVYAATKVAQEHLTAVWARQTGGTVVALRYHNVYGPGMPRDTPYSG-VAAIFRSALEAGRAPRVFEDGGQRRD 249
                    ****985555555666666777889*********************************66665555555.67777788999999999999999999 PP

                    EEEHHHHH CS
  NAD_binding_4 247 lvpvDyva 254
                    +v v  va
     KIR61401.1 250 FVHVRDVA 257
                    88875554 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.3   7.8e-06      0.01       2      68 ..       3      67 ..       2     110 .. 0.77
   2 !    8.4   0.0     0.001       1.3     144     172 ..     175     203 ..     160     221 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.8e-06
                EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHH CS
   adh_short  2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealv 68
                +vlvtG+++ IG  ++ +l  +G +v+vvd     ++++   l ++ a a  +++D++dr +v  ++
  KIR61401.1  3 HVLVTGGAGFIGTHVVTALHDAGHRVTVVDAGHPGAHRLP--LPDTVAGAPLVRLDLRDRPAVAGVL 67
                79***************************99876664443..3333344666777777666665555 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.001
                 TTBHHHHHHHHHHHHHHHHHHHHHGGGTE CS
   adh_short 144 agvaaYsAsKaavagltrslakelaptgi 172
                    ++Y+A+K a ++lt  +a++   t +
  KIR61401.1 175 DPRSVYAATKVAQEHLTAVWARQTGGTVV 203
                 5579******************9988765 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   5.5e-08     7e-05       1     100 [.       4     118 ..       4     126 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 5.5e-08
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHH....HHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG.............S-HHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdtkselaksl....keaGvelvkgdlddkeslvealkgvdvvfsvtgfy.............skeiedg 82 
                 +lv+G++G +G +vv al +agh+v ++  d  +  a+ l      aG+ lv  dl d+  ++ +l gvdvv    ++              + +    
  KIR61401.1   4 VLVTGGAGFIGTHVVTALHDAGHRVTVV--DAGHPGAHRLplpdTVAGAPLVRLDLRDRPAVAGVLAGVDVVVHQAAMVglgvdlddlpeyvGCNDLGS 100
                 79*********************99877..55555555553333458*************************988887677777766655442222233 PP

                 HHHHHHHHHHS-SEEEEE CS
        NmrA  83 kklvdAakeaGvkhfiyS 100
                   l +A ++aGv +++ +
  KIR61401.1 101 AVLLAAMARAGVHRLVLA 118
                 445667777888887754 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00014      0.18       6      81 ..      13      81 ..       8      94 .. 0.83
   2 !    6.8   0.0    0.0035       4.5     111     161 ..     150     200 ..     142     214 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
                  HHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----E CS
  adh_short_C2  6 IGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiap 81
                  IG +++ al+++G +v ++d++  +++r+    +  ga ++++D +d+ +v+ + +       ++D++v+ a+++ 
    KIR61401.1 13 IGTHVVTALHDAGHRVTVVDAGHPGAHRLPLPDTVAGAPLVRLDLRDRPAVAGVLA-------GVDVVVHQAAMVG 81
                  9************************777665555566779********99998876.......5788888888876 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0035
                   HHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGG CS
  adh_short_C2 111 kaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgp 161
                    +++p+ ++ g+ v+   v  e  ++  ++y+a+K a e+lt  +A++ g 
    KIR61401.1 150 GHFEPVCTSCGAAVTPGLVDEEAPLDPRSVYAATKVAQEHLTAVWARQTGG 200
                   5677888888999999999999999999*******************9986 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   2.9e-05     0.037       3      76 ..       6      76 ..       4      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.9e-05
                     EE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE- CS
  Sacchrp_dh_NADP  3 iiGa.GsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnl 76
                     + G+ G++G  v+  l++ ++   ++tv+d  + ++++l    +   +  + ld  +++a +a +l++ d+vv+ 
       KIR61401.1  6 VTGGaGFIGTHVVTALHDAGH---RVTVVDAGHPGAHRLPLPDTVAGAPLVRLDLRDRPA-VAGVLAGVDVVVHQ 76
                     55555*************997...8***************9999999999**********.9***********86 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.5   2.2e-05     0.029       3      30 ..       6      33 ..       3      36 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.2e-05
                EEECSSHHHHHHHHHHHHTTSEEEEEES CS
   Pyr_redox  3 vvvGgGyiglElAgalaelgkkVtvver 30
                v  G+G+ig  + +al++ g++Vtvv++
  KIR61401.1  6 VTGGAGFIGTHVVTALHDAGHRVTVVDA 33
                44589*********************86 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.9   0.00035      0.45       2      83 ..       8      79 ..       7      86 .. 0.69
   2 ?    2.1   0.1      0.13   1.7e+02      54      92 ..     227     267 ..     181     298 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00035
  Glyco_transf_4  2 GGverhvleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaa 83
                    GG++    +++ aL ++Gh+Vtvv  g++g+++    l   v      + +  +++l+ +++++ +l   ++Dvv +h++a 
      KIR61401.1  8 GGAGFIGTHVVTALHDAGHRVTVVDAGHPGAHRLP--LPDTV-----AGAPLVRLDLRDRPAVAGVLA--GVDVV-VHQAAM 79
                    899999999***************88888877766..22222.....333455666666666666666..67777.666555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.13
  Glyco_transf_4  54 llrslaflrrlrrllkre..kpDvvHahspaalgaallalr 92 
                       rs   + r+ r+++ +  + D vH+++ aa+ +a+l + 
      KIR61401.1 227 IFRSALEAGRAPRVFEDGgqRRDFVHVRDVAAANLAALEAT 267
                     22333333455555555588999999999888777766654 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.2    0.0013       1.6       3      30 ..       4      31 ..       2     134 .. 0.87
   2 ?   -2.4   0.0       2.9   3.7e+03      38      64 ..     254     280 ..     245     300 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0013
                EEEETTTSHHHHHHHHHHHHHHS-EEEE CS
          KR  3 ylitGGlGgLGlelarwlaekgarhlvl 30
                +l+tGG+G +G+++++ l + g r  v+
  KIR61401.1  4 VLVTGGAGFIGTHVVTALHDAGHRVTVV 31
                79********************876554 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.9
                 -HHHHHHHHHHHHTT-EEEE----TT- CS
          KR  38 dedskaliaelealgaevevvaaDvsd 64 
                 ++ ++a++a+lea+g++  ++a  v++
  KIR61401.1 254 RDVAAANLAALEATGTRTGWRAYNVAS 280
                 556677888899998888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 2257.22
//
Query:       KIR61402.1  [L=459]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3059.92
//
Query:       KIR61403.1  [L=123]
Description: ArsR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-16   57.8   0.2    1.1e-15   57.2   0.2    1.3  1  HTH_5            Bacterial regulatory protein, arsR family
      9e-16   57.7   1.2    1.2e-15   57.3   0.5    1.5  1  HTH_20           Helix-turn-helix domain
    2.2e-09   37.1   0.3    4.4e-09   36.1   0.3    1.4  1  MarR_2           MarR family
    1.8e-06   27.4   0.0    2.8e-06   26.8   0.0    1.3  1  HTH_24           Winged helix-turn-helix DNA-binding
    5.7e-06   26.2   0.0    9.3e-06   25.5   0.0    1.3  1  MarR             MarR family
    7.7e-06   25.6   2.6    1.2e-05   25.0   0.8    2.0  2  HTH_IclR         IclR helix-turn-helix domain
    0.00024   21.2   0.2    0.00069   19.7   0.0    1.9  2  AbiEi_4          Transcriptional regulator, AbiEi antitoxin
    0.00042   20.1   0.0    0.00064   19.5   0.0    1.3  1  TrmB             Sugar-specific transcriptional regulator Trm
     0.0018   18.0   0.0     0.0023   17.6   0.0    1.2  1  DUF4423          Domain of unknown function (DUF4423)
     0.0038   17.4   0.0     0.0056   16.9   0.0    1.4  1  PaaX             PaaX-like protein
     0.0045   16.9   0.2     0.0089   16.0   0.2    1.5  1  HTH_Crp_2        Crp-like helix-turn-helix domain
     0.0047   17.1   0.0     0.0075   16.5   0.0    1.3  1  Fe_dep_repress   Iron dependent repressor, N-terminal DNA bin
     0.0091   16.3   0.0      0.013   15.8   0.0    1.2  1  Rrf2             Transcriptional regulator
     0.0095   15.7   0.0      0.015   15.0   0.0    1.3  1  HTH_DeoR         DeoR-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   16.0   0.0      0.014   15.5   0.0    1.2  1  HTH_34           Winged helix DNA-binding domain
      0.018   15.5   0.0      0.035   14.6   0.0    1.4  1  HTH_27           Winged helix DNA-binding domain
      0.023   14.3   0.1      0.035   13.8   0.1    1.3  1  GntR             Bacterial regulatory proteins, gntR family
      0.027   14.4   0.0      0.041   13.8   0.0    1.3  1  HTH_36           Helix-turn-helix domain
      0.046   13.6   0.1        0.1   12.5   0.1    1.6  1  HTH_AsnC-type    AsnC-type helix-turn-helix domain
      0.046   13.4   0.0      0.069   12.8   0.0    1.2  1  RP-C             Replication protein C N-terminal domain
      0.054   13.7   0.0      0.096   12.9   0.0    1.3  1  2C_adapt         2-cysteine adaptor domain
      0.068   13.5   0.0       0.11   12.9   0.0    1.3  1  Penicillinase_R  Penicillinase repressor
       0.07   12.9   0.0       0.17   11.7   0.0    1.6  1  HTH_10           HTH DNA binding domain
       0.07   13.1   0.1       0.21   11.6   0.1    1.8  1  HTH_1            Bacterial regulatory helix-turn-helix protei
       0.15   11.5   0.0       0.19   11.2   0.0    1.1  1  RepL             Firmicute plasmid replication protein (RepL)


Domain annotation for each model (and alignments):
>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.2   1.6e-18   1.1e-15       1      46 [.      39      87 ..      39      88 .. 0.98

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 1.6e-18
                SHHHHHHHHHHTT...SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  1 dptRlkILklLae...gelcvcelaeelglsqstvShHLkkLreaGLVe 46
                dp+Rl++L+l ++   ge++v++l++ lglsq+tvShHL++L eaGL+e
  KIR61403.1 39 DPARLRLLSLIQSspeGEASVSDLTAPLGLSQPTVSHHLRILTEAGLLE 87
                8**********************************************87 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.5   1.6e-18   1.2e-15       3      60 ..      33      92 ..      31      93 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
                HHHHHS-HHHHHHHHHH..STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTE CS
      HTH_20  3 iaeALahPvRrrilraL..araegltaselaerldlskntlsyHLrvLeeagLvevvreg 60
                +++A+a+P R+r+l+++  ++++++++s+l + l+ls+ t+s+HLr+L eagL+e+++ g
  KIR61403.1 33 VLKAIADPARLRLLSLIqsSPEGEASVSDLTAPLGLSQPTVSHHLRILTEAGLLEREKRG 92
                79******************************************************9976 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.3   6.1e-12   4.4e-09       5      55 ..      40      90 ..      36      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 6.1e-12
                HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2  5 paqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrp 55
                pa +r+L  +  +p+++ +v++l++ lgls+++vs +l+ L +aGL+er++
  KIR61403.1 40 PARLRLLSLIQSSPEGEASVSDLTAPLGLSQPTVSHHLRILTEAGLLEREK 90
                899**********************************************94 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   3.9e-09   2.8e-06       3      47 ..      40      86 ..      39      87 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.9e-09
      HTH_24  3 etdrkILelLqk..nprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                  ++++L+l+q   ++  s ++L   lglS++tv+ +l+ L+e+Gl+
  KIR61403.1 40 PARLRLLSLIQSspEGEASVSDLTAPLGLSQPTVSHHLRILTEAGLL 86
                6689*****************************************97 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.3e-08   9.3e-06       5      51 ..      42      90 ..      39      91 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.3e-08
                HHHHHHHHHHSTT..EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR  5 qfviLrilyeqgp..lsvseLakklgvskstvtrvldrLekkGlieRsk 51
                ++++L ++ ++++  +svs+L   lg+s++tv+  l+ L ++Gl+eR+k
  KIR61403.1 42 RLRLLSLIQSSPEgeASVSDLTAPLGLSQPTVSHHLRILTEAGLLEREK 90
                5778888888766559999****************************97 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.3   9.1e+02       3      14 ..      28      39 ..      27      42 .. 0.85
   2 !   25.0   0.8   1.7e-08   1.2e-05       6      51 ..      43      89 ..      41      90 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.3
                HHHHHHHCT-CT CS
    HTH_IclR  3 dRalaiLdalae 14
                +R + +L+a+a 
  KIR61403.1 28 ERLAGVLKAIAD 39
                89999***9995 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 1.7e-08
                HHHHCT-CTTBSS-.BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR  6 laiLdalaeapqel.tlselArrtglpkStvhRlLqtLvelGyveqd 51
                l++L ++ + p++  ++s+l + +gl+ +tv+++L+ L+e G++e++
  KIR61403.1 43 LRLLSLIQSSPEGEaSVSDLTAPLGLSQPTVSHHLRILTEAGLLERE 89
                78999******9966******************************86 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         4   2.9e+03      15      24 ..      23      33 ..      20      38 .. 0.82
   2 !   19.7   0.0   9.6e-07   0.00069      12      47 ..      55      95 ..      43      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 4
     AbiEi_4 15 ttrelea.aGi 24
                 ++++e+ aG+
  KIR61403.1 23 KRADAERlAGV 33
                57899999997 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 9.6e-07
     AbiEi_4 12 Glfttrelea.aGispsa....lrrLvrkGwLvrlrrGvYa 47
                G +++++l+a +G+s  +    lr L+++G+L+r +rGv+a
  KIR61403.1 55 GEASVSDLTApLGLSQPTvshhLRILTEAGLLEREKRGVWA 95
                567899**********888*********************9 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     9e-07   0.00064      20      66 ..      54     101 ..      46     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 9e-07
                 HCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST.TTEEEE-- CS
        TrmB  20 lgpatadeiaeelgvprskvYevLrsLedkGlVerekgr.pklYravd 66 
                 +g+a+++++   lg+++++v   Lr L ++Gl erek+    +Yr v+
  KIR61403.1  54 EGEASVSDLTAPLGLSQPTVSHHLRILTEAGLLEREKRGvWAYYRLVP 101
                 6899*********************************88566888776 PP

>> DUF4423  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.3e-06    0.0023      21      77 ..      40      95 ..      22      98 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.3e-06
     DUF4423 21 Wyypvirellplkdf.kadpeelakrlrpkisaeevekalefLlklgllkkdedgkyr 77
                +  + +++l++  ++ +a+++ l   l+  +s+  v++ l++L+++gll++++ g + 
  KIR61403.1 40 PARLRLLSLIQSSPEgEASVSDLTAPLG--LSQPTVSHHLRILTEAGLLEREKRGVWA 95
                55567778766655559***********..************************9995 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   7.9e-06    0.0056      28      66 ..      61      99 ..      41     103 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7.9e-06
        PaaX 28 rllaelGiseslvRaalsRlakaGwlvrekegrrsfYrL 66
                 l+a+lG+s+ +v   l  l++aG+l rek g  ++YrL
  KIR61403.1 61 DLTAPLGLSQPTVSHHLRILTEAGLLEREKRGVWAYYRL 99
                5899**********************************9 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   1.2e-05    0.0089      20      56 ..      55      91 ..      28      95 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-05
                EEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEETEE CS
   HTH_Crp_2 20 lpltqeelAsmlGltretvsrilseLkreglisrgrr 56
                   +  +l + lGl++ tvs  l+ L ++gl++r++r
  KIR61403.1 55 GEASVSDLTAPLGLSQPTVSHHLRILTEAGLLEREKR 91
                36788899999**********************7533 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     1e-05    0.0075      21      57 ..      55      91 ..      47      93 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1e-05
                    SSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
  Fe_dep_repress 21 kvvktkdlaerLnvspssVsemlkkLekdGyveyeky 57
                    + ++++dl   L+ s ++Vs  l+ L ++G++e ek+
      KIR61403.1 55 GEASVSDLTAPLGLSQPTVSHHLRILTEAGLLEREKR 91
                    56899****************************9986 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.8e-05     0.013      11      67 ..      43      99 ..      39     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.8e-05
                HHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE.ETTT-TCEEE CS
        Rrf2 11 lhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvks.vrGkgGGyrL 67
                l++l  +++ +e+e +s++++ +  ++s++ +++ l+ L++agl++  +rG+   yrL
  KIR61403.1 43 LRLLSLIQSSPEGE-ASVSDLTAPLGLSQPTVSHHLRILTEAGLLEReKRGVWAYYRL 99
                56777777788877.******************************8525777666666 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.1e-05     0.015      12      47 ..      54      89 ..      44      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.1e-05
    HTH_DeoR 12 qgklsveelvellgvSeaTiRRDLneLeeqglltRt 47
                +g  sv +l++ lg S+ T+   L++L+e+gll+R 
  KIR61403.1 54 EGEASVSDLTAPLGLSQPTVSHHLRILTEAGLLERE 89
                5899******************************96 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0     2e-05     0.014       2      49 ..      42      91 ..      41      96 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2e-05
      HTH_34  2 RlavlsyLas..vdeadfvelkealeatdgnLsvhlkkLekagYievdke 49
                Rl +ls+  s  + ea+ ++l + l++++   s hl++L +ag +e++k 
  KIR61403.1 42 RLRLLSLIQSspEGEASVSDLTAPLGLSQPTVSHHLRILTEAGLLEREKR 91
                88999998888899********************************9996 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   4.8e-05     0.035      11      52 ..      48      90 ..      40      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.8e-05
      HTH_27 11 lir.hrrrrkkladlcgrlnvedshisyslkkLtekGLvertg 52
                li+  ++++++ +dl   l +++ ++s  l+ Lte+GL+er++
  KIR61403.1 48 LIQsSPEGEASVSDLTAPLGLSQPTVSHHLRILTEAGLLEREK 90
                555678899999***************************7765 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   4.9e-05     0.035      26      60 ..      58      92 ..      44      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.9e-05
                -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTC CS
        GntR 26 sereLaaefgVsrttvReALrrLeaeglverrqgr 60
                s+++L a +g s +tv   Lr L+++gl+er++++
  KIR61403.1 58 SVSDLTAPLGLSQPTVSHHLRILTEAGLLEREKRG 92
                688999*************************9986 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.7e-05     0.041      12      55 .]      46      86 ..      39      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.7e-05
      HTH_36 12 gslasfanknggcfpsqetlakrlglsknTvsraikeLeqlGyi 55
                +sl   +  +g+  +s+++l + lgls  Tvs +++ L ++G++
  KIR61403.1 46 LSLIQSS-PEGE--ASVSDLTAPLGLSQPTVSHHLRILTEAGLL 86
                5555555.5666..8***************************97 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00014       0.1       7      35 ..      44      74 ..      43      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00014
  HTH_AsnC-type  7 kILeaLqed..aRisyaeLAervGlSestvl 35
                   ++L+++q    + +s+++L + +GlS++tv 
     KIR61403.1 44 RLLSLIQSSpeGEASVSDLTAPLGLSQPTVS 74
                   89*******99******************95 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.7e-05     0.069      75     103 ..      60      88 ..      50      91 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.7e-05
        RP-C  75 aqLsralglsestlrrhlaaLveaGliir 103
                  +L   lgls+ t+++hl+ L eaGl+ r
  KIR61403.1  60 SDLTAPLGLSQPTVSHHLRILTEAGLLER 88 
                 6788889*******************966 PP

>> 2C_adapt  2-cysteine adaptor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00013     0.096       9      21 ..      12      24 ..      10      27 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00013
    2C_adapt  9 ptvNPlTgRkikp 21
                p v+PlTg +ik+
  KIR61403.1 12 PAVSPLTGEPIKR 24
                69**********9 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00015      0.11      25      65 ..      60     100 ..      53     112 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00015
                      HT--GGG---HHHHHHHHHHHHHTTS-EEEEETTEEEEE-- CS
  Penicillinase_R  25 eeleeekelaysTVktllrrLvkKgllsrekegrafiYspl 65 
                      + l ++  l++ TV   lr L++ gll+rek g    Y+ +
       KIR61403.1  60 SDLTAPLGLSQPTVSHHLRILTEAGLLEREKRGVWAYYRLV 100
                      5688899999***********************99988755 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00024      0.17      24      46 ..      57      79 ..      55      83 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00024
      HTH_10 24 vtlkeLAkelGIskstlsehLrk 46
                +++++L   lG+s++t+s hLr 
  KIR61403.1 57 ASVSDLTAPLGLSQPTVSHHLRI 79
                7899*****************95 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00029      0.21      23      39 ..      66      82 ..      63      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00029
                HTS-HHHHHHHHHHHHH CS
       HTH_1 23 LglsqpavsrqikrLEe 39
                Lglsqp+vs++++ L e
  KIR61403.1 66 LGLSQPTVSHHLRILTE 82
                8**********998855 PP

>> RepL  Firmicute plasmid replication protein (RepL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00026      0.19      85     113 ..      66      94 ..      57     104 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00026
        RepL  85 tgislktvsetlkileeanilkkkanGvl 113
                  g+s  tvs+ l+il ea++l ++  Gv 
  KIR61403.1  66 LGLSQPTVSHHLRILTEAGLLEREKRGVW 94 
                 58999**********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 828.78
//
Query:       KIR61404.1  [L=882]
Description: hypothetical protein TK50_27570 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-89  299.3   0.0      5e-89  298.9   0.0    1.2  1  Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin gly
    1.5e-39  135.6   0.0    2.4e-39  134.9   0.0    1.3  1  Bac_rhamnosid_N  Alpha-L-rhamnosidase N-terminal domain
    1.2e-16   60.5   0.0    2.4e-16   59.5   0.0    1.5  1  Bac_rhamnosid    Bacterial alpha-L-rhamnosidase concanavalin-
    3.5e-08   33.1   0.0    9.2e-08   31.8   0.0    1.8  1  Bac_rhamnosid_C  Bacterial alpha-L-rhamnosidase C-terminal do


Domain annotation for each model (and alignments):
>> Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.9   0.0   1.1e-92     5e-89       3     340 .]     427     781 ..     425     781 .. 0.97

  Alignments for each domain:
  == domain 1  score: 298.9 bits;  conditional E-value: 1.1e-92
                      -EEEEES-HHHHHHHHHHHHHHHHTBSSSB-S-SSSS----BHHHHHHHHHHHHHHB--HHHHHHHHHHHHHH--TTS--BSBSS--T..T--B CS
  Bac_rhamnosid6H   3 tgsfecsdpllnrlhenvlwsvrsnflgvptDCPqrdErlgWtgdaqlfaptasylydveaflekwlrdladeqrengavptvaPevl..gals 94 
                      +g+f csd+ l rl  nv w++r nfl v tDCPqrdErlgW+gda + apta+y +dv+afl+k++rd+ad+q ++g +  +aP++       
       KIR61404.1 427 VGEFACSDEHLTRLAANVAWTIRDNFLEVATDCPQRDERLGWLGDAGAIAPTAAYHFDVSAFLAKFARDAADTQGPDGEIRNYAPAIPpsSMRP 520
                      79************************************************************************************99977778 PP

                      --TTTTTHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTSBT.TB..--S-S--STT.................-SS----HHHHHHHHH CS
  Bac_rhamnosid6H  95 etaeWadaivivpwelyetygDkeilkkqYesmkryldylkqrsddgle.elskfqlgDWldpe............ardgaaktekalvatayl 175
                      + + W+d  + +++ l ++ygD  + ++ ++sm r+ld++++ +++gl+ +    ++gDWl+ +             +++ ++t++a+v+ta+ 
       KIR61404.1 521 GAPGWSDGFIRLVHLLVQRYGDLPTAERLFASMVRFLDHVDRANPAGLRvNEVGADFGDWLSLPerdglelhpgyaYTGAYSTTPTAIVDTAHS 614
                      899*******************************************9999***********99899*******998678999************ PP

                      HHHHHHHHHHHHHTTS..--HHHHHHHHHHHHHHHHHHB.-TTS-BTT--HHHHHHHHHTT-S-GGGH.HHHHHHHHHHHHHTTS-----TTTH CS
  Bac_rhamnosid6H 176 vrslklvakiaellgkeedakkyaalaeelkaafnkkyldsetgsvandtqtanalpLafglvpeaeraakvaerlvkkveenknhlstGfvGt 269
                      +rs  ++a+ia++lg++ +a++ a++a+e++aa+++++   +tg v++ tq+a+a +   gl+  ae  +++a+rl +++e+   h++tG+ G+
       KIR61404.1 615 YRSFVQLAQIAAWLGRDREAARLADRAAEIRAAYRAAFP-LATGGVEDATQAAYAQAVGYGLLTGAEA-QEAADRLRAAIERV-GHVTTGIHGV 705
                      ***************************************.9**********************77777.99999999999875.57******** PP

                      HHHHHHHHHTT-HHHHHHHHH--SSSSSHHHHHTT-SS--SSTTSB-.....--TTS--S--SGGGGGHHHHHHHT CS
  Bac_rhamnosid6H 270 pillrvLsengeedlayalllqeeypswgymvknGaTtiwErWdsml.....npkemnSfnHyalgavaewlyenv 340
                      +++l+vL+++g++d+a++lll++++psw+ymv++GaTtiwE Wd+++     ++ emnSfnH algav+ +l+e+v
       KIR61404.1 706 EHVLPVLCAHGHADFALELLLRRQMPSWLYMVDQGATTIWEKWDGIRpdgtlATAEMNSFNHCALGAVGRFLFEHV 781
                      *********************************************9999999*********************987 PP

>> Bac_rhamnosid_N  Alpha-L-rhamnosidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   0.0   5.3e-43   2.4e-39       2     170 ..     138     302 ..     137     304 .. 0.94

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 5.3e-43
                      -EEEEEEEEEEESEEEEEETTEE-S.SBSSBT----TTTEEEEEEEE-TTT--SEEEEEEEEEE-HHHHS--TTS...S-SS-SS-EEEEEEEE CS
  Bac_rhamnosid_N   2 kikrarlyitaLGvyelelNGkrvg.devLaPgwtdyrkrvqyqtyDvtsllregeNaigvlvgeGwyagrvgfgekrrstygkepallaqlev 94 
                      ++ +ar+y++aLG+y+l+lNG + + d+   Pgwtdyr rv+ qt+D    lr g N++++ +++Gwyagr+g    +   yg++pallaqle+
       KIR61404.1 138 EVGTARVYASALGLYRLWLNGVELTaDALYRPGWTDYRTRVYHQTFDCGAALRPGRNTLAAVLANGWYAGRLGLL-REPGFYGDRPALLAQLEI 230
                      6789*****************9986256669******************************************95.67999************* PP

                      EETTS-EEEEE-STT-EEE--SEEEEETTTEEEEEGGG--TTTTSTT---TTSEE-EE--S--SEEEE--S--EEE CS
  Bac_rhamnosid_N  95 eyedgtkeviatdtsWkvtegpiteseiydGEtyDarkeikgwsepgfddskwnpvkvlkvpegkleaqeappvrv 170
                         dg + v  t+  W++ +g++++ +++ GE+ D r+e+ gw  +gfdd+ w+p++ ++  +  +e q+++p+++
       KIR61404.1 231 ---DG-RPVASTGAGWRAGHGALQATDLLRGESQDLRQEPPGWRLAGFDDAGWAPAEPFAGVTPPVEPQPHDPITT 302
                      ...55.56789*************************************************************9986 PP

>> Bac_rhamnosid  Bacterial alpha-L-rhamnosidase concanavalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   5.4e-20   2.4e-16       6      94 ..     317     405 ..     312     419 .. 0.92

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 5.4e-20
                    TEEEEEEEEEEEEEEEEEE---TT-EEEEEEESEE-TTS-EE-GGGTT---EEEEE----SSEEE--SS--EEEEEEEEES-SS---GG CS
  Bac_rhamnosid   6 gttvlDlGqnlaGvirlkvkgeeGtevklrfgEvLeddgevdtrnlrkakatdeyilkGreeeawqpsftfhGfrYveiegladelade 94 
                    g +v+D+Gqnl+G+++l+ +     e+ +r+gE+L+++  v+++nlr a ++d++++   + ++ + sft hGfrY e+ gl+ +l ++
     KIR61404.1 317 GPAVFDFGQNLVGWTKLTTRCLPSVELIVRHGEILTPEQLVYRDNLRGAFQEDRFVVPDAGPHQLATSFTMHGFRYAEVWGLPSQLPHH 405
                    668******************************************************99999*******************98775544 PP

>> Bac_rhamnosid_C  Bacterial alpha-L-rhamnosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   2.1e-11   9.2e-08       1      72 [.     783     855 ..     783     861 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 2.1e-11
                      --EECCGGGT.EEEE----BTTB-EEEEEEEETTEEEEEEEEEETTEEEEEEEE-TT-EEEEEEE-SSGGG-E CS
  Bac_rhamnosid_C   1 GirpsepGfk.kiviaPkpggdlksvkasfeslyGkikvdWkredgkftlnvsvPanttaeVvLpgekeekev 72 
                      Gi+ +e+ +  +i+++      l +++a+++s+ G+i ++W+  ++ ++ ++++Pa + a+V  p  ++  + 
       KIR61404.1 783 GIDATETTWTgEITVRAAYSAALGWARAAYDSPAGPIGSSWRWAGDVVEHELRIPATAYATVRAPAGARLVAA 855
                      77777777843899************************************************99988776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 5809.89
//
Query:       KIR61405.1  [L=343]
Description: hypothetical protein TK50_27585 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-26   92.5   0.0    4.1e-26   92.1   0.0    1.1  1  ABC_tran   ABC transporter
      4e-15   56.1   0.1    7.5e-15   55.2   0.1    1.5  1  oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal reg
    5.2e-07   29.8   0.0    3.7e-05   23.7   0.0    2.2  2  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
  ------ inclusion threshold ------
      0.014   15.8   1.4      0.023   15.1   1.4    1.5  1  AAA_16     AAA ATPase domain
      0.025   14.8   0.5        0.2   12.0   0.5    2.1  1  AAA_22     AAA domain
       0.17   11.3   0.0       0.48    9.8   0.0    1.6  1  SMC_N      RecF/RecN/SMC N terminal domain
       0.19   11.8   0.0        0.5   10.5   0.0    1.7  1  MMR_HSR1   50S ribosome-binding GTPase
       0.25   11.4   0.0       0.38   10.8   0.0    1.2  1  DUF87      Helicase HerA, central domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0   1.8e-29   4.1e-26       2     136 ..      27     184 ..      26     185 .. 0.92

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 1.8e-29
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx........... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren........... 79 
                 ++vsl+l  ge+++ivGe+G+GKS L+++ +gl++       G+++l g+ + +    +++  + +e+++++q+  + l p + ++e+           
  KIR61405.1  27 DQVSLDLGFGERLGIVGESGSGKSVLARTAMGLTRTrvarVTGQVRLAGHAVLDlserRRRALWGREVAMVFQDplSALHPITPIGEQiaeavrrdprv 125
                 89********************************99888899*********999999999999***********9778888888******999999998 PP

                 ...HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                    ++  ++ ++l+++g++  ++++++s++++LSgG++qrva+a+a++ +pkl+++DEpt
  KIR61405.1 126 trrQAATRAVELLETVGIPL-AAQRARSRAHELSGGMRQRVAIAMAVAGRPKLIFADEPT 184
                 77777777888899999877.8888899*******************************9 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.1   3.3e-18   7.5e-15       2      65 .]     237     301 ..     236     301 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 3.3e-18
   oligo_HPY   2 ErgpssklfdeplHPYTkaLlrsvprldrekd.klekikgeapslerldeGCpFapRCpfaleeC 65 
                 Ergp++++f +p  +YT aL++++pr d  ++   + i+g +p+l + + GC+FapRC fa++ C
  KIR61405.1 237 ERGPVADVFARPGMRYTSALMAAIPRADVARQvLPRPIPGLPPNLLDPPPGCRFAPRCGFASDRC 301
                 9*******************************88899***************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.016        37       3      25 ..      40      62 ..      39      93 .. 0.76
   2 !   23.7   0.0   1.7e-08   3.7e-05     234     301 ..     154     219 ..     123     220 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.016
      AAA_21  3 vliGpNgsGKSnLLdaldllarl 25
                +++G  gsGKS L ++  +l r+
  KIR61405.1 40 GIVGESGSGKSVLARTAMGLTRT 62
                69**********99887777655 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 1.7e-08
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHSpll 301
                 a+elS G+++  a++ a++ ++   +l++ DEp + L+  +++r+l+l+  ++++ g+ +++++H+  +
  KIR61405.1 154 AHELSGGMRQRVAIAMAVAGRP---KLIFADEPTTALDVTVQARILDLFdALCREFGIGLVMVSHDLGV 219
                 6899*******9*******999...99**********************999999**********9765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   1.4     1e-05     0.023      26     113 ..      38     127 ..      24     213 .. 0.49

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1e-05
      AAA_16  26 lvllsGesGvGKsslvrellralekd.....ggif.lrgkcdqlesa........ipysalaqalareellrqllde.........aesaeleawrekl 101
                  + ++GesG+GKs l+r+++  l+++      g + l+g+++   s+        +                    e         ++     +  e++
  KIR61405.1  38 RLGIVGESGSGKSVLARTAM-GLTRTrvarvTGQVrLAGHAVLDLSErrrralwgR--------------------EvamvfqdplSALHPITPIGEQI 115
                 56699***************.67777233331222333333333111111122220....................11112222332233333333333 PP

      AAA_16 102 eealaavpelag 113
                  ea++  p +++
  KIR61405.1 116 AEAVRRDPRVTR 127
                 333332222222 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   8.8e-05       0.2      10      29 ..      41      60 ..      38     219 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.8e-05
      AAA_22 10 vtGesGtGKTtllrrlleql 29
                ++GesG+GK++l+r+ +   
  KIR61405.1 41 IVGESGSGKSVLARTAMGLT 60
                89************977655 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00021      0.48      28     185 ..      40     201 ..      27     232 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00021
                 EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--......BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersakklrseklsdlihk......skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtk 120
                  ivG+ GSGKs l       +G + ++  r +   +l  +      +++++++   ev+++f+++ ++    ++ + i  ++ +  + + ++ ++++  
  KIR61405.1  40 GIVGESGSGKSVLARTA---MGLTRTRVARVTGQVRLAGHavldlsERRRRALWGREVAMVFQDPLSA---LHPITPIGEQIAEAVRRDPRVTRRQAAT 132
                 599********998876...888888888888777777666777744555555666899999998887...5666778888888888888888888877 PP

                 HHHHHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 121 kevsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke 185
                 + v elle++gi            +LSgG ++ va+a+ +A    +p+ l + De   aLD +  +++ +l+++
  KIR61405.1 133 RAV-ELLETVGIPLAaqrarsrahELSGGMRQRVAIAMAVAG---RPK-LIFADEPTTALDVTVQARILDLFDA 201
                 665.689999998888889999999*******9999998763...343.5667999999998888888877765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00022       0.5       2      55 ..      39     142 ..      38     172 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00022
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE.................................................EEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke.................................................iel 50 
                  +ivG + +GKS L ++ +g  + +v++  g  r   ++ ++l++++                                                 +el
  KIR61405.1  39 LGIVGESGSGKSVLARTAMGLtRTRVARVTGQVRLAGHAVLDLSERRrralwgrevamvfqdplsalhpitpigeqiaeavrrdprvtrrqaatraVEL 137
                 79****************996588888888777766666665443223445555555555555555555555555555555555555555555555555 PP

                 EECGG CS
    MMR_HSR1  51 vDtpG 55 
                 + t+G
  KIR61405.1 138 LETVG 142
                 55555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00017      0.38      14      41 ..      29      54 ..      22      57 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
       DUF87 14 vyldlnklvtrHlAilgsTGsGKSntva 41
                v+ldl   + ++l+i+g++GsGKS +++
  KIR61405.1 29 VSLDL--GFGERLGIVGESGSGKSVLAR 54
                67777..44899************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2359.51
//
Query:       KIR61406.1  [L=330]
Description: hypothetical protein TK50_27590 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-27   96.4   0.0    2.7e-27   96.0   0.0    1.2  1  ABC_tran     ABC transporter
    1.5e-10   41.4   0.0    3.7e-10   40.2   0.0    1.7  1  oligo_HPY    Oligopeptide/dipeptide transporter, C-terminal r
    1.8e-05   25.1   0.3    7.2e-05   23.1   0.3    1.9  1  AAA_22       AAA domain
    4.2e-05   23.5   0.2     0.0038   17.1   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
     0.0032   17.9   1.5     0.0067   16.8   1.5    1.6  1  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.059   12.9   0.2       0.59    9.7   0.1    2.5  2  AAA_25       AAA domain
       0.11   12.3   0.0       0.22   11.3   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
        0.2   11.4   0.0       0.25   11.1   0.0    1.2  1  PRK          Phosphoribulokinase / Uridine kinase family
       0.27   11.1   0.3       0.44   10.4   0.3    1.3  1  RsgA_GTPase  RsgA GTPase
       0.32   11.0   0.8       0.61   10.1   0.4    1.7  2  AAA_5        AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   1.5e-30   2.7e-27       2     136 ..      28     174 ..      27     175 .. 0.94

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 1.5e-30
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS..--S-TTSBHHHH...........HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx...........xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe..pqlfpeltvren...........esdeeiek 87 
                 ++vs++l++ge++++vGe+G+GKSt +++++gl+    G++ll g+++++   ++lr++++ ++q+  ++++p+ ++ ++           +  e+  +
  KIR61406.1  28 SQVSVQLHRGEILGLVGESGCGKSTTARAMLGLVPLSGGTLLLHGEPVRR-HDRRLRRSVQAIFQNpaASFNPKRSLLDSvaeplrvhghgTPAERRRR 125
                 689***********************************************.88899**********8878888888888899*9******988888999 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 al++l+ ++++++ ++++p+++SgGq qr a+ara + +p++l++DEp 
  KIR61406.1 126 ALAELDRVGITEQLAHRRPREVSGGQCQRAAIARATILRPEILVCDEPV 174
                 999999999999************************************7 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0     2e-13   3.7e-10       1      65 []     226     293 ..     226     293 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 2e-13
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd...klekikgeapslerlde....GCpFapRCpfaleeC 65 
                 vE+g + ++ ++p+HPY+ +L +svp+ld       +++  +     +e+ d     GC+Fa+ Cp ++ +C
  KIR61406.1 226 VEQGGALDIAHDPRHPYSVMLQDSVPSLDLAAArapRVQPTP----GAEDVDGrqlaGCRFATLCPSVTTAC 293
                 8***************************99998333333333....44444445566*************99 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.3     4e-08   7.2e-05       6     128 ..      38     203 ..      33     209 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4e-08
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.................erpevvfvtlpsst.sskdllrellralglelka................ 70 
                  il ++GesG+GK+t++r +l   +                        ++++ +f ++++s    ++ll  +++ l + +++                
  KIR61406.1  38 EILGLVGESGCGKSTTARAMLGLVPLSG---GtlllhgepvrrhdrrlrRSVQAIFQNPAASFnPKRSLLDSVAEPLRVHGHGtpaerrrralaeldrv 133
                 67889*****************986432...25679999999999998766666666666666666777888888888877778999998888888888 PP

      AAA_22  71 ......erlsseell.ealeqalrarav...ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                       +  + +e+   ++++a+ ara+   +e+l+ DE    l+   ++++le L +l    ++g++++++
  KIR61406.1 134 giteqlAHRRPREVSgGQCQRAAIARATilrPEILVCDEPVSaLDvsiQAQILELLAELRA--EQGLAMLFI 203
                 899**977777777779*******9999***********8777989555999999999999..999999887 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.011        19       2      22 ..      40      60 ..      39      81 .. 0.86
   2 !   17.1   0.0   2.1e-06    0.0038     233     302 ..     143     210 ..      70     211 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.011
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                 +l+G  g+GKS+  +a+ +l
  KIR61406.1 40 LGLVGESGCGKSTTARAMLGL 60
                579*************99887 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2.1e-06
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                  +re+S G+ + +a++ a + ++    +l+ DEp + L+ ++++ +lell el++  g   ++ +H+  ++
  KIR61406.1 143 RPREVSGGQCQRAAIARATILRP---EILVCDEPVSALDVSIQAQILELLAELRAeQGLAMLFISHDLGVV 210
                 57899999999966666666666...9***********************88888889999*****98776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.5   3.7e-06    0.0067      20     107 ..      33     135 ..      24     203 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.7e-06
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala........... 106
                   +r+e++ l+GesG+GKs+ +r+ l  +  +gg + l g+ ++           + l r + ++++ +++++ ++++ r  l+++++           
  KIR61406.1  33 QLHRGEILGLVGESGCGKSTTARAMLGLVPLSGGTLlLHGEPVRR--------HDRRL-R-RSVQAIFQNPAA-SFNPKRSLLDSVAEplrvhghgtpa 120
                 45677999******************8888886444377777666........22333.3.444555555333.5555555555555544444444444 PP

      AAA_16 107 ..............a 107
                               +
  KIR61406.1 121 errrralaeldrvgI 135
                 444443333333331 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00033      0.59      31     134 ..      35     131 ..      11     141 .. 0.69
   2 ?   -0.4   0.0       0.4   7.3e+02     166     188 ..     183     205 ..     171     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00033
      AAA_25  31 pagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal.......rddarllvldlagv.eslpLfakdr 121
                  +ge+  l+G +g+GK+t a     a++        ++p  g +l++++E  + +  rRlr+  +a+         ++r l+    +v e+l++   ++
  KIR61406.1  35 HRGEILGLVGESGCGKSTTA----RAMLG-------LVPLSGGTLLLHGEPVR-RHDRRLRRSVQAIfqnpaasFNPKRSLLD---SVaEPLRVHGHGT 118
                 5789999**********975....44443.......23456789999999888.88888888888887777664223333333...3445565544444 PP

      AAA_25 122 ggtlltadvdale 134
                   +++ +++++l+
  KIR61406.1 119 PAERRRRALAELD 131
                 4444555555554 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.4
      AAA_25 166 galvealeriarrtgaavllvhH 188
                 ++++e l++++++ g a l++ H
  KIR61406.1 183 AQILELLAELRAEQGLAMLFISH 205
                 68899999999999999999999 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012      0.22      15      41 ..      30      56 ..      25      63 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
      AAA_29 15 htieidlkgatlltGpsGsGKSTllDA 41
                 ++++++ ++  l+G+sG GKST   A
  KIR61406.1 30 VSVQLHRGEILGLVGESGCGKSTTARA 56
                567788666889***********7655 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00014      0.25       1      19 [.      39      57 ..      39     123 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
         PRK  1 vIgvagsSGaGkttvarkl 19
                ++g+ g+SG+Gk+t+ar++
  KIR61406.1 39 ILGLVGESGCGKSTTARAM 57
                6899************998 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00025      0.44      88     120 ..      25      58 ..      16      68 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00025
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinall 120
                  e++++++ +l+  ++  lvG+SG GKSt   a+l
   KIR61406.1  25 EAVSQVSVQLHRgEILGLVGESGCGKSTTARAML 58 
                  5566777777666999************877765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.4   0.00034      0.61       4      23 ..      42      61 ..      39      73 .. 0.83
   2 ?   -2.7   0.0       3.1   5.5e+03      64      90 ..     159     190 ..     140     194 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00034
                EE--SSSSHHHHHHHGGGGB CS
       AAA_5  4 LvGppGtgKselaerlaaal 23
                LvG++G+gKs+ a+ ++ ++
  KIR61406.1 42 LVGESGCGKSTTARAMLGLV 61
                9*************998876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.1
                 -....G-SEEEEESGGG--.HHHHHHHHHHHH CS
       AAA_5  64 r....egeilvlDEverae.sevlnsLlslle 90 
                 r    ++eilv DE   a   ++++  l ll 
  KIR61406.1 159 RatilRPEILVCDEPVSALdVSIQAQILELLA 190
                 13345788888888444443777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2148.32
//
Query:       KIR61407.1  [L=507]
Description: hypothetical protein TK50_27595 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-75  251.9   2.2    1.6e-74  251.2   2.2    1.3  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f
     0.0017   17.8   0.3     0.0045   16.4   0.3    1.7  1  SBP_bac_3  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.2   2.2   1.8e-78   1.6e-74       2     373 ..      69     420 ..      68     424 .. 0.89

  Alignments for each domain:
  == domain 1  score: 251.2 bits;  conditional E-value: 1.8e-78
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESSETTTTTTHCHHHHHHH CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkkpnalfltllaavpasi 100
                 ++p+LA+s  + s+D++t+t++L  gv+FsDGtp++Ae+v+f++er + +++++ +  +      +k+vea+d++tv ++lk+p+a +++ +a   +  
  KIR61407.1  69 PQPNLAKS-LTASPDKLTWTMTLPTGVQFSDGTPFNAEAVKFNLERGMAKGSTAAALLSS-----VKSVEAPDETTVLLRLKEPFASLPYAFAYDGSGT 161
                 79******.5********************************************998886.....9******************995555554444444 PP

                 GC..CHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTT.SCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCCTHCHHHHHTTEE CS
   SBP_bac_5 101 ak..kaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgg.gkpkldriefkvipdsdaraaalqsGeiddvaepppsdieqlkeakglk 196
                 a   ++    ++ ++d+ ++  g GP+klk+++pg+ ++l+rnp+Yw++ ++++ld++++k+i+d++++ +alq+G+id ++ ++p+  ++ k++++++
  KIR61407.1 162 AGyiASPTALKQHGDDYTAHAAGVGPFKLKSWSPGKPVELVRNPNYWNKdRQVYLDQVVIKTIADPQSAYQALQAGDIDLMSTVNPTLMQTAKADSQVN 260
                 44453444677779999******************************766999********************************************** PP

                 EEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHHHTT-BCSSTSCEETC CS
   SBP_bac_5 197 vlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLkeaGykdgdggglrek 295
                   +++ gg    + +N ++ppfdd r+RqA+s A++r+eiv+   eg ++pa sl+p++ + +    +p    +d++ Ak+l ke    +g        
  KIR61407.1 261 F-VQGVGGDQDAVILNLTQPPFDDLRLRQAVSKALNRQEIVDLTTEGFGKPAVSLFPEGNAFHGTAADP---GFDLAGAKALVKEYETATGR------- 348
                 *.***********************************************************99988888...69***********9999885....... PP

                 EEEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTT CS
   SBP_bac_5 296 klkltlllasgspaekaiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsss 373
                       +++++ ++ +++ ++i++qlk++G++v++ ++d  +++ ++   +++++i + + a++ +pd   + fl+s+
  KIR61407.1 349 ----KPSFSYTCNTIRPATDVIVAQLKAAGFDVKLDALDY-SAWVAAFFGKKYQAICWTM-AGFLTPDLLPYRFLYSG 420
                 ....3455556667778899********************.99999999****9999854.45555555555555554 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3   5.1e-07    0.0045     131     206 ..     215     294 ..     188     298 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.1e-07
                 C..TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEET...TTHHHHHHHHHHH CS
                 x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxx RF
   SBP_bac_3 131 k..gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrk...gdseLrkainkal 206
                 +  ++ i++ ++ ++a+qaL++g +d + + +p+l + +k +   ++v+  +  +++ +   + +   +d  Lr+a+ kal
  KIR61407.1 215 YldQVVIKTIADPQSAYQALQAGDIDLMSTVNPTLMQTAKADSQVNFVQG-VGGDQDAVILNLTQppfDDLRLRQAVSKAL 294
                 1447889999***********************************99993.222222222222112225666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3566.97
//
Query:       KIR61408.1  [L=265]
Description: hypothetical protein TK50_27600 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-63  213.2   7.8    4.1e-63  213.1   7.8    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.4e-42  145.4   6.8    1.7e-42  145.1   6.8    1.0  1  adh_short        short chain dehydrogenase
    3.4e-10   40.1   6.5    4.8e-10   39.6   6.5    1.2  1  KR               KR domain
     0.0016   17.9   5.8     0.0032   17.0   5.8    1.5  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.011   14.9   5.4      0.016   14.3   4.9    1.5  1  RmlD_sub_bind    RmlD substrate binding domain
       0.11   11.4   0.5       0.16   10.9   0.5    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
       0.31   10.3   5.1       0.49    9.6   5.1    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
       0.36   10.7   4.1       0.69    9.8   3.5    1.8  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.1   7.8   1.8e-66   4.1e-63       1     233 [.      12     247 ..      12     248 .. 0.96

  Alignments for each domain:
  == domain 1  score: 213.1 bits;  conditional E-value: 1.8e-66
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   GaasgIG+a+A++la++G +vv++d++ ++  ++v+++++++ga+ +  +DV+++++v+++++ v++ +g+lD +vn+a+   +   + l+++ +++
    KIR61408.1  12 GAASGIGAATAQELAARGVHVVAMDIDPAGlSATVAAIEAAGGAAtAAVVDVAERAAVQDVIAGVAAGHGRLDLVVNCAATFLA---RGLDVTGADW 105
                   9*****************************999********998857***********************************99...88******** PP

                   HHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT..HHHH CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg..fdel 188
                   d++l vn++++ ++++aa pl+++   +++vn++s++a+++  +   y+++Kaa++ ltr++A++l+p+giRvN+vspg+i T+ +s+++g    + 
    KIR61408.1 106 DHVLRVNVQGISNVVQAAHPLLARApgAAVVNTASISAHVAQRSRWTYNTTKAAIVTLTRCMAMDLAPDGIRVNVVSPGWIWTPEVSRAAGgdRAAW 202
                   ********************777665699********************************************************988888445569 PP

                   HHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 189 leelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   +  + + + l+rlg+p eva+a++fL+s +as+itG++l vDgG+
    KIR61408.1 203 EPVWGRFHLLRRLGEPVEVARAIAFLCSSDASFITGTELPVDGGY 247
                   999*****************************************9 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.1   6.8   7.7e-46   1.7e-42       4     185 ..       9     189 ..       6     196 .. 0.97

  Alignments for each domain:
  == domain 1  score: 145.1 bits;  conditional E-value: 7.7e-46
                 EEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHHH CS
   adh_short   4 lvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeewe 102
                  vtGa+sGIG a+a+ela++G++vv++d+ ++ l ++++ ++++g  a+a+ vDv++r++v+++++ +++ +g+ld++vn+A+    +   +++ ++w+
  KIR61408.1   9 AVTGAASGIGAATAQELAARGVHVVAMDIDPAGLSATVAAIEAAGGAATAAVVDVAERAAVQDVIAGVAAGHGRLDLVVNCAAT-FLARGLDVTGADWD 106
                 69*********************************************************************************9.6888899******* PP

                 HHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSH CS
   adh_short 103 rvievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTd 185
                  v+ vN++g+ ++++a+ p + ++ ++++vn++S+ ++v+  +   Y ++Kaa++ ltr++a++lap+girvn+v PG + T+
  KIR61408.1 107 HVLRVNVQGISNVVQAAHPLLARAPGAAVVNTASISAHVAQRSRWTYNTTKAAIVTLTRCMAMDLAPDGIRVNVVSPGWIWTP 189
                 *******************************************************************************9987 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   6.5   2.1e-13   4.8e-10       5     158 ..      10     162 ..       7     179 .. 0.88

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 2.1e-13
                 EETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--HH CS
          KR   5 itGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemtae 103
                 +tG++ g+G ++a+ la++g  h+v +  +    +  +a++a++ea g   +++ +Dv++++av+ +++ + a ++++  v+++A ++  + l ++t +
  KIR61408.1  10 VTGAASGIGAATAQELAARGV-HVVAMDID---PAGLSATVAAIEAAGGAATAAVVDVAERAAVQDVIAGVAAGHGRLDLVVNCAATFLARGL-DVTGA 103
                 9******************97.56666666...34455689********************************************99988877.68999 PP

                 HHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHH CS
          KR 104 dleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDa 158
                 d+++vl+  v+G+ n+ ++ ++     +   +v ++Si++ + ++ + +Y ++ a + +
  KIR61408.1 104 DWDHVLRVNVQGISNVVQAAHPllarAPGAAVVNTASISAHVAQRSRWTYNTTKAAIVT 162
                 ****************88877766669999********************998877655 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   5.8   1.4e-06    0.0032       3     104 ..      10     125 ..       9     180 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.4e-06
                 EETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHH....HH.T-SEEEE--S...---HHHHHHS CS
   Epimerase   3 VtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrsalerlfk....ee.qpdavihlAa...vggvaassed 83 
                 VtGa+  iG+a++++l+++g++v+++d ++ +        +          +   +d+ +r+a++++++     + + d v+++Aa     g +++  d
  KIR61408.1  10 VTGAASGIGAATAQELAARGVHVVAMDIDPAGLSAT----VaaieaaggaaTAAVVDVAERAAVQDVIAgvaaGHgRLDLVVNCAAtflARGLDVTGAD 104
                 9************************99994443333....2334689****999********9999987222234578******986555688999999 PP

                 HHHHHHHHTHHHHHHHHHHHH CS
   Epimerase  84 padfieknlqgtlnlleaark 104
                    +++ n+qg  n+++aa+ 
  KIR61408.1 105 WDHVLRVNVQGISNVVQAAHP 125
                 99****************984 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   4.9     7e-06     0.016       5      90 ..      10     124 ..       7     138 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7e-06
                    EESTTSHHHHHHHHHCTTTSEEEEEE-TT.....................T--TTSHHHHHHHH.....HHH--SEEEE----...--HHHHHHSH CS
  RmlD_sub_bind   5 vtGanGqlGseLakqlaeeglevlaltre.....................eldltdaeavaell.....keakpdvvvnaAAy...tavDkaEsee 71 
                    vtGa   +G + a++la++g++v+a++ +                      +d+++++av++++      + + d+vvn+AA    +  D    + 
     KIR61408.1  10 VTGAASGIGAATAQELAARGVHVVAMDIDpaglsatvaaieaaggaataaVVDVAERAAVQDVIagvaaGHGRLDLVVNCAATflaRGLDVTGADW 105
                    8*************************99999******************99*************66665556889******9533367899***** PP

                    HHHHHHHTHHHHHHHHHHH CS
  RmlD_sub_bind  72 eaayavnaeavealAeaaa 90 
                    ++  +vn+++  ++ +aa+
     KIR61408.1 106 DHVLRVNVQGISNVVQAAH 124
                    **************99986 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   7.2e-05      0.16       2     104 ..      10     124 ..       9     143 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.2e-05
   3Beta_HSD   2 vtGgaGFlGralvkeLvrleelkevrvlDlrespelleels.kvnvkk....viegDvtdkdkleealegv.......dvvihlaslv.....dvagkl 83 
                 vtG+a  +G+a  +eL  ++   +v ++D+  +p  l+ +   ++ +        +Dv + + +++++ gv       d+v+  a+       dv+g  
  KIR61408.1  10 VTGAASGIGAATAQELAARGV--HVVAMDI--DPAGLSATVaAIEAAGgaatAAVVDVAERAAVQDVIAGVaaghgrlDLVVNCAATFlarglDVTG-A 103
                 899999999999999988882..4444444..443333222022222133348999****9999999999744444345677776664222226666.5 PP

   3Beta_HSD  84 tedeimkvnvkGTrnvleacv 104
                   d++ +vnv+G  nv++a+ 
  KIR61408.1 104 DWDHVLRVNVQGISNVVQAAH 124
                 6688**************985 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   5.1   0.00022      0.49      74     147 ..      19      91 ..      18     101 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00022
                      THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT.-EEEEE-TT CS
  DegT_DnrJ_EryC1  74 vatanavlelgakpvfvDvdpdtynidpaaieaaitertkaIlpVhlyGqvadmdalkaiaakhg.lkvieDaAh 147
                      +ata+  +  g  +v +D+dp+ +  ++aaieaa    t+a++ V    +v d   +  +aa hg l ++  +A 
       KIR61408.1  19 AATAQELAARGVHVVAMDIDPAGLSATVAAIEAAGGAATAAVVDVAERAAVQD--VIAGVAAGHGrLDLVVNCAA 91 
                      59***************************************987766655554..57777777765666666665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.5   0.00031      0.69       4      56 ..      10      62 ..       8      91 .. 0.71
   2 ?   -1.7   0.0         1   2.3e+03      14      31 ..      89     106 ..      79     153 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00031
                EE--.SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS- CS
     3HCDH_N  4 viGa.GtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklk 56
                v Ga   +Ga  a+ +a++g++Vv +di+++ l +  ++ie+    ++ +  ++
  KIR61408.1 10 VTGAaSGIGAATAQELAARGVHVVAMDIDPAGLSATVAAIEA-AGGAATAAVVD 62
                55553348*******************************998.33333333333 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1
                 HHHHHHHTT-EEEEE-S- CS
     3HCDH_N  14 iaavfasagleVvlvdis 31 
                  aa f+++gl+V+  d +
  KIR61408.1  89 CAATFLARGLDVTGADWD 106
                 578888888888877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2090.84
//
Query:       KIR61409.1  [L=309]
Description: hypothetical protein TK50_27605 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-39  133.6   0.0    5.8e-39  133.3   0.0    1.1  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      9e-18   64.2   0.1    9.3e-18   64.2   0.1    1.2  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    0.00044   20.5   0.0    0.00084   19.5   0.0    1.5  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
  ------ inclusion threshold ------
      0.056   13.8   0.1       0.22   11.9   0.0    1.9  2  Gp_dh_N        Glyceraldehyde 3-phosphate dehydrogenase, NAD 
       0.14   12.0   0.0       0.26   11.2   0.0    1.5  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.0   1.6e-42   5.8e-39       2     178 .]     109     283 ..     108     283 .. 0.93

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 1.6e-42
                   HHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTC.EECSHHHHHHH-SEEEE CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgv.elvsleellaesDivsl 97 
                   a++ a++rrl+ a++++ +  w++    +     +  vG+ G+GrIG++va r+ a+g+ v ++d++ ++       gv  + +l el a    ++l
    KIR61409.1 109 AAVYAHNRRLTTASRSCADVGWTTAGIAPALPPGQDPVGVAGFGRIGREVASRALALGFPVHVWDPFVSDVP----AGVtAHPTLVELAAAVNHLTL 201
                   77899*****************88888888899999*******************************88444....4551455************** PP

                   -S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCH.HHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  98 hlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpeds.pllelpnviltPHia 178
                   h+p+tp+tr++++++ l+++  +  l+NtaRG+lv e +Ll+aL++g+++ a lDv+++ep+++ s +l+ +p+ ++tPH+a
    KIR61409.1 202 HVPATPQTRGIVDRAVLDALGADGHLVNTARGALVVETDLLAALDAGTLGFASLDVLASEPPEQTSaKLAGHPRALVTPHLA 283
                   **************************************************************9775499***********98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.1   2.6e-21   9.3e-18      20     103 ..      26     204 ..       5     307 .. 0.73

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 2.6e-21
                 EEEEEESCSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
  2-Hacid_dh  20 vevevkdellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt................ 102
                 + v+  d+ +++ +l+ a dad+l+v     +t++vl+ lp+L+ ++r+g+G Dn+Dl+aa++rG+ V nv +y   +vA++                 
  KIR61409.1  26 FAVSRFDARTEDAVLDVAGDADGLLVQWAP-ITDRVLAGLPRLRAVVRYGIGLDNIDLAAAARRGVEVRNVDDYCLAEVADHSmaavyahnrrlttasr 123
                 46667779********************98.***************************************************97777777777777777 PP

                 ................................................................................T CS
                 ................................................................................x RF
  2-Hacid_dh 103 ................................................................................a 103
                                                                                                  
  KIR61409.1 124 scadvgwttagiapalppgqdpvgvagfgrigrevasralalgfpvhvwdpfvsdvpagvtahptlvelaaavnhltlhvP 204
                 777776666666666666666666666666666666666666666666666666666655555555555555555555551 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.3e-07   0.00084       2      89 ..     146     230 ..     145     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.3e-07
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE- CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidg 89 
                    +g+ G G +G++ a++ l+ g+ v+v++   +     v +g++a+ ++ el+a+++   + v+a+++++ ++++ +l+al ++  l+++
     KIR61409.1 146 VGVAGFGRIGREVASRALALGFPVHVWDPFVSD----VPAGVTAHPTLVELAAAVNHLTLHVPATPQTRGIVDRaVLDALGADGHLVNT 230
                    79**************************66444....457889999***************************9999999887777765 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.98   3.5e+03      45      45 ..     110     110 ..      77     136 .. 0.50
   2 ?   11.9   0.0   6.3e-05      0.22       3      20 ..     146     163 ..     145     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.98
                 E CS
     Gp_dh_N  45 y 45 
                  
  KIR61409.1 110 A 110
                 2 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 6.3e-05
                 EEEESTSHHHHHHHHHHH CS
     Gp_dh_N   3 vainGfGRIGrlvlrall 20 
                 v++ GfGRIGr v+  +l
  KIR61409.1 146 VGVAGFGRIGREVASRAL 163
                 899********9987665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.1e-05      0.26       2      36 ..     146     180 ..     145     231 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.1e-05
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseeale 36 
                 v+v G G +G+++a+ +++ g++V++ d   + + 
  KIR61409.1 146 VGVAGFGRIGREVASRALALGFPVHVWDPFVSDVP 180
                 89************************998655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2120.12
//
Query:       KIR61410.1  [L=310]
Description: hypothetical protein TK50_27610 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-23   81.4   0.5    2.3e-22   79.0   0.5    2.2  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    1.3e-14   54.3   1.1    6.2e-14   52.1   1.1    2.0  1  ADH_zinc_N       Zinc-binding dehydrogenase
    1.3e-08   34.6   0.6      2e-08   34.0   0.6    1.3  1  Glu_dehyd_C      Glucose dehydrogenase C-terminus
    7.8e-05   22.1   0.5     0.0001   21.7   0.5    1.2  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
       0.01   15.4   0.1      0.015   14.9   0.1    1.2  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
       0.01   16.9   0.1      0.019   16.0   0.1    1.4  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
      0.048   14.2   0.3       0.11   13.1   0.3    1.6  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
      0.066   12.4   0.1       0.11   11.6   0.1    1.4  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
       0.11   13.3   0.1       0.24   12.1   0.1    1.7  1  Methyltransf_25  Methyltransferase domain
       0.11   12.4   0.1       0.26   11.1   0.1    1.6  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.5   1.3e-25   2.3e-22       2     109 .]      25     120 ..      24     120 .. 0.95

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 1.3e-25
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSEEE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvsldGgfaeyvv 100
                 gev++ v+a+giCgs+lh + +  +  +++pli+GHE++G+ ++          G+rV+v+pl scg+C+ C  g+e+lC+++++lg++++G+fae+v 
  KIR61410.1  25 GEVVVAVRAVGICGSELHGIGD--SHFRSPPLIMGHEFSGTTSD----------GRRVTVNPLLSCGTCDLCGLGREQLCRRRQILGIHRPGAFAEHVA 111
                 89******************88..688999**********9776..........9******************************************** PP

                 ECGGGEEEE CS
       ADH_N 101 vpekklvkl 109
                 vpe+ l++l
  KIR61410.1 112 VPEHALHPL 120
                 ****99875 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   1.1   3.5e-17   6.2e-14       2     128 ..     161     273 ..     160     275 .. 0.94

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 3.5e-17
                 HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEEEHH CS
  ADH_zinc_N   2 vGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeefdlr 100
                 +Gl  + +A+ +  ev++ d se +l+ a++lGa +v  +           ltg   +dv++++vG+ at + +++ l+pgG+ v vG+++g+  fd +
  KIR61410.1 161 IGLVSLLVARQYSDEVTVCDLSEARLAVAERLGAAAVGPT-----------LTG--EFDVIIDAVGAAATHRLSVQRLRPGGTAVWVGLLSGDAGFDGQ 246
                 78888899999999**********************9999...........994..9********************************999999**** PP

                 HHHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N 101 nlllkeksilGsllgslreefkealdll 128
                 +++++ek+++Gs +++   ef+ a++l+
  KIR61410.1 247 QIVREEKHVVGSYCYT-GAEFAHAVALA 273
                 ****************.99999998875 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.6   1.1e-11     2e-08       5     181 ..     130     280 ..     126     296 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.1e-11
  Glu_dehyd_C   5 vLvEPisiveKaielaeasrsafewepesalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYvdsretpvdeipeaseemd 102
                   ++EP++ +  a++la+        e ++  vlGaG++GL++l + +   +  ++v+v +     + ++ + e+lGa  v          p  + e+d
   KIR61410.1 130 AMIEPLANAVHALNLARP------AEGARIAVLGAGTIGLVSLLVAR---QYSDEVTVCDL---SEARLAVAERLGAAAVG---------PTLTGEFD 206
                  567777777777776654......3456789***********54444...45566777774...5668889******9996.........5668899* PP

  Glu_dehyd_C 103 lvvEaTGsakhafeaiealapnGvaaLlGvpedsevevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpesl 181
                  ++++a G+a+    +++ l+p G a+ +G+ ++  + +dg     ++v e k +vGs     ++f++av+  +++  ++
   KIR61410.1 207 VIIDAVGAAATHRLSVQRLRPGGTAVWVGLLSGD-AGFDGQ----QIVREEKHVVGSYCYTGAEFAHAVALAETVALDW 280
                  *****************************98765.666765....567779*******999999999998766665555 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.5   5.7e-08    0.0001      27      75 ..     149     197 ..     134     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 5.7e-08
                  ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCEC CS
  AlaDh_PNT_C  27 epakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfv 75 
                  e a++ v+G+G+ Gl ++ +a++   +Vtv+D+++arl   e lga  v
   KIR61410.1 149 EGARIAVLGAGTIGLVSLLVARQYSDEVTVCDLSEARLAVAERLGAAAV 197
                  679***************************************9999866 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   8.2e-06     0.015       2      38 ..     152     188 ..     151     210 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.2e-06
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHH CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDideekvdk 38 
                     +i+v+G+G +Glv+ +v  +   ev+++D +e++ + 
      KIR61410.1 152 RIAVLGAGTIGLVSLLVARQYSDEVTVCDLSEARLAV 188
                     8*******************************99765 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.0   0.1     1e-05     0.019      19      99 ..     201     275 ..     182     301 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1e-05
                   -TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-...-HHHHHHHHHHHHH CS
  ADH_zinc_N_2  19 ggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas..aqadileelaaliee 99 
                     + +Dv++d+vg +a+ + s++ l++gG+ v +g       l+  a + +++ v+ e  + + ++   +a+ +++ +al e 
    KIR61410.1 201 LTGEFDVIIDAVGAAATHRLSVQRLRPGGTAVWVGL------LSGDAGFDGQQIVREEKHV-VGSYcyTGAE-FAHAVALAET 275
                   3456*********888879999999888**999885......5555555666666666666.5666655555.6666666665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   6.2e-05      0.11       1      33 [.     152     184 ..     152     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.2e-05
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdk 33 
                 +++v+G+G+igl    +++++ ++Vtv++ s+ 
  KIR61410.1 152 RIAVLGAGTIGLVSLLVARQYSDEVTVCDLSEA 184
                 799************************998775 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   6.4e-05      0.11     135     176 ..     143     184 ..     114     198 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.4e-05
                  HHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 135 alklkllpkrivvvGgGyiGvElAaalaklgkevtlveardr 176
                   l +    +ri+v G+G iG++   +++++ +evt+ +  + 
   KIR61410.1 143 NLARPAEGARIAVLGAGTIGLVSLLVARQYSDEVTVCDLSEA 184
                  333344449**************************8776554 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00013      0.24       4      42 ..     156     194 ..     153     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                      ET-TT.SHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHH CS
  Methyltransf_25   4 lGcGt.GrltlalakrlgkakvtgvDiseemleaarerae 42 
                      lG+Gt G ++l +a+++ + +vt +D+se+ l+ a++  +
       KIR61410.1 156 LGAGTiGLVSLLVARQY-SDEVTVCDLSEARLAVAERLGA 194
                      78998899999999998.6***************998764 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00015      0.26       2      39 ..     153     190 ..     152     200 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekal 39 
                 +av+GaGt+G     v+ +   eV+++d se++l+ a+
  KIR61410.1 153 IAVLGAGTIGLVSLLVARQYSDEVTVCDLSEARLAVAE 190
                 9**********999999999***********9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2047.15
//
Query:       KIR61411.1  [L=260]
Description: hypothetical protein TK50_27615 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1739.30
//
Query:       KIR61412.1  [L=285]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-62  210.1   0.0    3.6e-62  209.9   0.0    1.1  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.9   0.0     2e-66   3.6e-62       2     218 .]      74     279 ..      73     279 .. 0.95

  Alignments for each domain:
  == domain 1  score: 209.9 bits;  conditional E-value: 2e-66
                    EEEEEEE--SHHHHHTTT.-SS-EEEEEEGGGE.EETTE..EE-TTSSSS-EE......EEEEEEEESS-B--T--HHHHHTTEEEEEEEEEEE-S CS
  FAA_hydrolase   2 ivcdglnyaehvreagkaaeeppdrhiplepvfflkrasslvgpgdpirrPagsekldyEvELavvigkplrevlsveeAedaiaGytllnDvsaR 97 
                    +vc+g+nya+h++e g    +pp+     +pv+flk +  +vgp+d++ +P gs+k d+EvELavv+ +  r+++++++A d++aGy+l+nD+s R
     KIR61412.1  74 VVCIGMNYAAHATESG---AAPPQ-----HPVVFLKHPGCVVGPDDDVILPLGSTKTDWEVELAVVMKRTPRHLTDPADALDYVAGYALANDLSER 161
                    79************98...45777.....788******************************************99******************** PP

                    BGGG---.HHHHHHTGGGEEEEEE-B--B-.STT---SS-EEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHH-B-TT-EEEEEES.......S- CS
  FAA_hydrolase  98 dlqaeekaplgwflgksfdtftpiGpwivtpdeledpedlelrlrvngeevqdsntkdmifspaeliahlsagltLepGdliltGTpsgvgaeees 193
                     +q e     +w +gk+ +tf p+Gp++ +++el dp+ l+lr +vnge++qds+t+dmifs++eli hls+ + L+pGd++ tGTp+gv   + +
     KIR61412.1 162 AFQIEVS-GGQWSKGKCAETFNPLGPVLRPASEL-DPGRLRLRSWVNGEPRQDSSTADMIFSVPELIVHLSQHMLLMPGDVVNTGTPEGVA-LSGR 254
                    ***8777.77******************999999.579***************************************************96.4678 PP

                    -EE--TT-EEEEEETTTEEEEEEE. CS
  FAA_hydrolase 194 lkflkdgDeveveieglGelrnrVa 218
                     ++l+ gD+v +eieglG+++++V+
     KIR61412.1 255 FPYLRVGDVVALEIEGLGRQEQTVV 279
                    9**********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       201  (0.0112109); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2129.28
//
Query:       KIR61413.1  [L=405]
Description: acyl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-34  119.9   2.9    1.6e-34  119.3   2.9    1.3  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    5.9e-20   71.3   0.0      1e-19   70.5   0.0    1.4  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
      2e-15   57.4   0.3    8.5e-15   55.4   0.1    2.1  2  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    2.5e-12   47.2   1.4    2.5e-12   47.2   1.4    1.8  2  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
    0.00015   21.6   0.0    0.00031   20.5   0.0    1.5  1  HpaB_N         4-hydroxyphenylacetate 3-hydroxylase N termina


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   2.9   4.6e-38   1.6e-34       1     149 [.     239     387 ..     239     388 .. 0.99

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 4.6e-38
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpdraeasmaKlfas 96 
                    ++Gf+ a+ +l+  Rl++++++lglar a + al++a  r+afg +l+d   ++++la+ ++e+ea+r+l++raa+ ld g+ + + +s+aK+f++
     KIR61413.1 239 DQGFDNAQVRLAPARLTHCMRWLGLARHAQDIALDRAAGRRAFGSALADLGMIQQMLADSEIEIEASRALILRAAWELDSGGRAAQSTSVAKAFVA 334
                    58********************************************************************************************** PP

                    HHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHHH CS
  Acyl-CoA_dh_1  97 elaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarrl 149
                    e++++++d+ +q++G  G++ +  + r++r++r +ri++G+se +r  i+rr+
     KIR61413.1 335 EAVWRIVDRSLQICGSLGVSGDLMLGRYLREVRPFRIYDGPSETHRWAISRRA 387
                    *************************************************9996 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   2.9e-23     1e-19       1      97 []     128     227 ..     128     227 .. 0.81

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 2.9e-23
                    EEE---..SS-SS-GGG---EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEE.TS-------EEEEEEE..GGGEEE.-----BSS-TTS-EEEE CS
  Acyl-CoA_dh_M   1 afalTE..pqaGsdvasvkttaaerdggeyvlnGeKiwitnaaiatlalvlar.tekpdrarglslflvprdapgvsv.rrieeklGlrglptgel 92 
                    +fa+TE  p+aGsd  +++t +a+   g++vlnG+K++ t+a  a +a+v+ar +++p  ++g ++flv++d pg+++ r ie+    +   +gel
     KIR61413.1 128 CFAMTEpaPGAGSDPSALAT-TARPVPGGWVLNGRKWFTTGADGAAFAIVMARtSGQPGDRGGATMFLVDTDVPGLELvRTIETLDEAMVGGHGEL 222
                    9*****77799*********.55666669************************64444489****************9677765333333347777 PP

                    EEE.. CS
  Acyl-CoA_dh_M  93 vfedv 97 
                    v++d+
     KIR61413.1 223 VLQDC 227
                    77765 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.1   2.4e-18   8.5e-15       4     112 ..       9     123 ..       6     124 .. 0.88
   2 ?   -1.2   0.0       0.9   3.2e+03      48      80 ..     312     347 ..     303     359 .. 0.70

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 2.4e-18
                    HHHHHHHHHHHHHHHTHHHHHHHH.HHTSGHHHH....HHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-H.HHHHHHHHHHHTTHHHH CS
  Acyl-CoA_dh_N   4 qealrdtvrefaeeelaphaaewd.eegefprel....wkklaelGllgitvpeeygGagldyleaaivaeelarada.glalllgvhsslvapai 93 
                     + + ++ r+f+++ +  +++e++  +++ p+++    + ++ ++G+++ ++p  +gG+g d   +a+v+ee ++    +lal +++ +  +++ +
     KIR61413.1   9 ARSVAERTRAFVRDTVLAVEREHRgSAHALPEQVrldlQAAARQAGVFCPHLPPRWGGLGIDRRGQALVFEEAGYSLFgPLALNIAAPDEGNMHLL 104
                    678899**********88888888666699988667835555789******************************766477889999********* PP

                    HHHS-HHHHHHHHHHHHTT CS
  Acyl-CoA_dh_N  94 lrfGteeqkrryLpklasg 112
                    ++ + +eq++ryL++la+g
     KIR61413.1 105 AAVADPEQQERYLRPLAAG 123
                    *****************98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.9
                    TTS-GGGTS--..S-HHHHHHHHHHHHH.H-HHHHH CS
  Acyl-CoA_dh_N  48 itvpeeygGag..ldyleaaivaeelar.adaglal 80 
                     ++  + gG+    + ++ a vae + r +d +l++
     KIR61413.1 312 AAWELDSGGRAaqSTSVAKAFVAEAVWRiVDRSLQI 347
                    567777788762245899999999999876766666 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.4     5e+03      70      70 ..      31      31 ..       7      70 .. 0.48
   2 !   47.2   1.4   6.9e-16   2.5e-12       2     129 ..     255     372 ..     254     377 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.4
                   H CS
  Acyl-CoA_dh_2 70 a 70
                   +
     KIR61413.1 31 H 31
                   1 PP

  == domain 2  score: 47.2 bits;  conditional E-value: 6.9e-16
                    HHHHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   2 giaavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaa 97 
                    ++++  lG+Ar a + ++++a++r    +g +lad  ++q+ la+++ +++A ral++raa++     + g +      +  ++a+a+++e   ++
     KIR61413.1 255 THCMRWLGLARHAQDIALDRAAGRRA--FGSALADLGMIQQMLADSEIEIEASRALILRAAWE----LDSGGRA----AQSTSVAKAFVAEAVWRI 340
                    688999*******************9..***********************************....5666554....678899************ PP

                    HHHHHHHCGGGGGBTT-HHHHHHHHHHHHCTS CS
  Acyl-CoA_dh_2  98 vdalfeaaGgsalrkesplqRlwRDahaaaaH 129
                    vd+  +++G+ ++  +  l R++R+++  +++
     KIR61413.1 341 VDRSLQICGSLGVSGDLMLGRYLREVRPFRIY 372
                    **************************988877 PP

>> HpaB_N  4-hydroxyphenylacetate 3-hydroxylase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   8.5e-08   0.00031     175     271 ..     152     235 ..     114     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 8.5e-08
                 -SSEEEEEEEEEEEE-.--SSEEEE---SS-..TTSGGG-EEEEEETT-TTEEEEE-------S..-TTT-TTTTT----EEEEEEEEEEEEGGGEE CS
      HpaB_N 175 tddGivVrGakvlaTgaaladeilvlptramlkeedkdyavafavpvdapGlklicresfedkleesefdyplssrfdendalvvfDdVfVPwerVf 271
                  + G v +G k ++Tga  a   +v+   +  +++d+  a +f v +d pGl+l+   ++ d+             + +    +v+ d+fVP +rV+
  KIR61413.1 152 VPGGWVLNGRKWFTTGADGAAFAIVMARTSG-QPGDRGGATMFLVDTDVPGLELVRTIETLDE------------AMVGGHGELVLQDCFVPADRVL 235
                 56799*********************99766.9*********************988777762............2224556689999*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3157.55
//
Query:       KIR61414.1  [L=339]
Description: hypothetical protein TK50_27660 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-43  148.8   3.6      3e-43  148.5   3.6    1.1  1  APH       Phosphotransferase enzyme family
     0.0014   18.1   0.0     0.0019   17.6   0.0    1.1  1  EcKinase  Ecdysteroid kinase
  ------ inclusion threshold ------
      0.016   14.1   0.0      0.023   13.6   0.0    1.1  1  DUF1679   Protein of unknown function (DUF1679)


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5   3.6     5e-47     3e-43       3     219 ..      31     252 ..      29     288 .. 0.93

  Alignments for each domain:
  == domain 1  score: 148.5 bits;  conditional E-value: 5e-47
                 EEE--.SSCEEEEEEETT--EEEEEE-TT...S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS.....HHHHHHHHH CS
         APH   3 relsggasnrtylvttpagryvlrrnppa...raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr.....klsaaqlpe 93 
                  ++ gg sn ty v+ ++++++lrr+p +    +a++i+re+++ ++La++ vpv++++ ++ d ++ig +f l  +v+g ++++      l ++  ++
  KIR61414.1  31 DFVDGGRSNLTYAVHAGDRSWALRRPPFGtiaPSANDIHREFRVTAALAGSTVPVAAPVLYCADPAVIGAPFSLAAWVDGVVIRDpgqlaVLAPSTVRA 129
                 5789************************999999********************************************************999****** PP

                 HHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE-- CS
         APH  94 llealgeflaalhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviD 192
                 ++  ++++l +lh+v+pa+ +l+ f+++  +llrq+++++++++  +++   ++++e + ++laa +p++++++++HgD++++N++  +d     +++D
  KIR61414.1 130 VGHSMIDLLLRLHSVAPASVGLDAFGRPEGFLLRQVHRWKRQWDVVATRS-SADADE-LHRRLAAAVPPQSAPGIVHGDFRLDNIIYSADLSGAAALLD 226
                 **************************************************.99****.******************************8888889**** PP

                 -TT-EEEECCHHHHCCHHHCSCHCCCH CS
         APH 193 fedaglgpplyDlavllrswtseldpe 219
                 +e+a++g+pl Dl+ ll  +t++  + 
  KIR61414.1 227 WEMATIGDPLTDLGLLL-VYTDPVCAP 252
                 *****************.657665544 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.1e-07    0.0019     196     261 ..     183     243 ..     158     247 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.1e-07
    EcKinase 196 kenlferllelveekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQlsrygSpalDLlyfl 261
                 +++l++rl++ v  +++    ++HGD+ + Ni+++ d +g   ++ l+D+ ++ +g p  DL  +l
  KIR61414.1 183 ADELHRRLAAAV--PPQSAPGIVHGDFRLDNIIYSADLSG---AAALLDWEMATIGDPLTDLGLLL 243
                 556666666666..667777899**************998...99*****************8776 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.8e-06     0.023     270     315 ..     202     244 ..     198     246 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.8e-06
     DUF1679 270 lvhgDlwsaNiLfseeeegklklkkviDyQlvslgnpaeDlvrlll 315
                 +vhgD    Ni++s++ +    + +++D+ ++++g p +Dl+ ll+
  KIR61414.1 202 IVHGDFRLDNIIYSADLS---GAAALLDWEMATIGDPLTDLGLLLV 244
                 79*************988...5899*****************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2285.48
//
Query:       KIR61415.1  [L=75]
Description: hypothetical protein TK50_27665 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0021   17.8   2.0     0.0046   16.7   2.0    1.5  1  SprB      SprB repeat


Domain annotation for each model (and alignments):
>> SprB  SprB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.0   2.5e-07    0.0046      18      34 ..      12      28 ..      12      30 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.5e-07
        SprB 18 tvtvsGGtapYtYswng 34
                t++++GGt +Y Y+w +
  KIR61415.1 12 TASATGGTSGYHYTWQP 28
                899************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 603.79
//
Query:       KIR61416.1  [L=791]
Description: ribonucleoside-diphosphate reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-174  581.6   0.0   1.6e-174  581.3   0.0    1.1  1  Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
    2.3e-16   59.6   0.0    5.3e-16   58.4   0.0    1.7  1  Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain
    6.8e-14   52.2   0.0    1.5e-13   51.1   0.0    1.6  1  ATP-cone         ATP cone domain


Domain annotation for each model (and alignments):
>> Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  581.3   0.0  2.7e-178  1.6e-174       1     523 [.     226     745 ..     226     746 .. 0.98

  Alignments for each domain:
  == domain 1  score: 581.3 bits;  conditional E-value: 2.7e-178
                      EEE......BSS-EEEE-X..............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC   1 ssCfvlsv.edslesIletvkeaallskaggGvGlnlsklRakgslvkgtegaasGpvsfmklidavadvvkqgGkRrGAamvylevwHpDiek 93 
                      ssCf+++  +d+l+sI+e ++++a+lsk++gG+G+++s++R +g+l++gt+g+++G+v+f+k++da + +v+qgG+R+GAa+vyle+wHpD+e+
       KIR61416.1 226 SSCFLVDSpRDELDSIYERYHQVAKLSKFSGGIGISWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVNQGGRRKGAACVYLEPWHPDVEE 319
                      8****9988************************************************************************************* PP

                      XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........................XXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC  94 fidaKekntgeeenrlsnlnisvgvpdlFmeavkedkdwtLfsPrtvvkleklygeefeeeyeeleekakikkkevkakeLfeeiaesawetge 187
                      f++++  ntgee++r++nln++ ++pd+Fm++v++d+dw+L++P+++++l +lyge+f+ +y+++e+k   + ++v+a++L+ +++++ ++tg+
       KIR61416.1 320 FLELR-DNTGEESRRTHNLNLANWIPDEFMRRVEADGDWSLIDPSDAPELPDLYGEAFDAAYRAAEKK---AVRTVRARDLYGRMMRTLAQTGN 409
                      *****.99***********************************************************9...5569******************* PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 188 PgvlfkDtiNrrnvlekakggkIratNlCgEiplleyes.vavCnLasinLakfvkkdeegkkefdwdelkkviqlvvraLdnvidvnkyplpe 280
                       +++fkD+ Nr ++++ + g+ I+ +NlC+Ei+ +++++ +avCnL+s+nL ++v     g + +dwd+l+++++++v +Ld vid+n+yp ++
       KIR61416.1 410 GWMTFKDASNRLSNQTGEPGNVIHLSNLCTEILEVNDDAeTAVCNLGSVNLGAHV-----GPDGVDWDRLRATVRTAVVFLDRVIDINYYPAEQ 498
                      ***************9999***************9999889**************.....667******************************* PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..X......XXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
  Ribonuc_red_lgC 281 iekntkktRriGlGvmgladalaklgipydseealkfarkitelltyyaykaSvelAkergpfplfekskyskgilpvdef..eekekedweeL 372
                      ++ ++ + R++GlG+mg++dal+ l++p+ds+ea++++ ++ e + ++a+++S+ lA++ gp+p + +++++kg+l+ d +  + +++ +w  L
       KIR61416.1 499 AAASNPRWRPVGLGLMGWQDALFTLRLPFDSPEARELSTRVQEEIFLTALETSAGLAERFGPHPAYAQTRAAKGELHPDLWgaRVTQTSRWAAL 592
                      *********************************************************************************88666799***** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 373 reeikkyGlrnamvtalaPTgsiSliagtssgiePifalvykksvtvgeflevnpvfeeeLkklglwseellkki...lesvqgleeipeeikr 463
                      r++i+ +Glrn+ ++a+aPT++i+ iag+ ++ieP +++++k+++++gefl+vn+++++eLk++glw+ +++++i   ++svqg++e+pe+++ 
       KIR61416.1 593 RARIAAHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQVNTYLVRELKARGLWTPAIRERIkrdEGSVQGVTELPEAVRS 686
                      ***************************************************************************777777************* PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 464 vfktaldidqedhikaqaaiqkwidqsiSktinlpneatvedvkelyllAwklGlKgvty 523
                      +f+ta+++ q+++i+++aa+++++dqs+S++++l +  t+ +++++yl+Awk GlK+++y
       KIR61416.1 687 LFRTAWELPQRALIDLAAARAPYVDQSQSLNLFL-SAPTIGKLSSMYLYAWKSGLKTTYY 745
                      **********************************.***********************99 PP

>> Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   8.9e-20   5.3e-16       2      82 ..     151     222 ..     150     223 .. 0.94

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 8.9e-20
  Ribonuc_red_lgN   2 kltynalkvledrYllkdeng.eivEspqqmfmRvAlalaiaealydkleedkdlaeefydlmssqkflpasPtlmnaGtel 82 
                      ++ y++l++ +drYll+  ++  +vE+pq+   RvA +l +           + +a  fy+lms + +lp+sPtl+n+Gt++
       KIR61416.1 151 RFEYFGLRTVADRYLLRHPQTrLVVETPQYWLLRVACGLSQ----------TAGEAVDFYRLMSALAYLPSSPTLFNSGTRH 222
                      799****************9967****************96..........78899************************86 PP

>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   2.5e-17   1.5e-13       1      80 [.      17      97 ..      17     103 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 2.5e-17
                -EEE-TTS-EEE--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHIIT-BHHHHHHHHHHHHH....HSS-HHHHHHHHHH CS
    ATP-cone  1 ikViKRdGtvepfdvekIkraiekAcegseeeideiaeeveaevrkrlrdgisteeIqdlvektli....ehpdyavaaayily 80
                ++V+KRdG +ep+dv+kI +a+++ +   ++e+d++  +v+ +  ++l+dg +t e+++l ++t++    e+p+y+++aa++l 
  KIR61416.1 17 MQVRKRDGDTEPVDVNKIVEAVQRWVAD-LDEVDPL--RVATKTISGLYDGATTAELDKLSIQTAAeligEEPQYSKLAARLLA 97
                89***********************999.*******..*******************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 5120.74
//
Query:       KIR61417.1  [L=346]
Description: ribonucleoside-diphosphate reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-79  265.8   0.0    5.2e-79  265.6   0.0    1.0  1  Ribonuc_red_sm  Ribonucleotide reductase, small chain
  ------ inclusion threshold ------
      0.066   12.8   0.0       0.15   11.7   0.0    1.6  1  DUF2204         Nucleotidyl transferase of unknown function (


Domain annotation for each model (and alignments):
>> Ribonuc_red_sm  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.6   0.0   5.8e-83   5.2e-79       3     279 .]      25     309 ..      23     309 .. 0.98

  Alignments for each domain:
  == domain 1  score: 265.6 bits;  conditional E-value: 5.8e-83
                     -TTS-SSHHHHHHHHHHHCT---GGGS-GHHHHHHHHSTS-HHHHHHHHHHHHHHHHHHHHHHHCHHHCHHCCBSSHHHHHHHHHHHHHHHHHHH CS
  Ribonuc_red_sm   3 vlfpikypeiwelykkleanfWtpeevdlskDlkdwkekLsedekefikkvlaflalldtivnenlverllsevqipearafygfqaamEniHae 97 
                     +l p++yp++ +  k + +n Wt eevdl+ Dl+d+  +Ls++e++++++++af+a+ dtiv++nlv++l+++v+ pe r+++++q+++E++H +
      KIR61417.1  25 TLRPMRYPRFFDRFKDAIKNTWTVEEVDLHSDLADLA-RLSPAEQHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQ 118
                     578*********************************9.7******************************************************** PP

                     HHHHHHHHHT.-HHHHHHHHCHHHH-HHHHHHHHHHHHHHCTTTSC.........HHHHHHHHHHH.HHHHCCCHHHHHHHHHHHHTTSSHHHHH CS
  Ribonuc_red_sm  98 sYsllletlvkdekekdelfnaieenpalqkkaewikkwyeskkde.........ekfaerlvafa.llegilfysgFaailwlkkrgllpglae 182
                      Y +ll+t+v de e+  +f a+e++p++ +kae++ +w++s +d          + f+ +l+ fa ++eg++fy+ Fa+++ l++rgll+gla 
      KIR61417.1 119 FYLNLLDTYVPDERERFAAFAAVENIPSIARKAEFCFTWINSIHDLrelrtredrRAFLLNLICFAaCIEGLFFYGAFAYVYFLRSRGLLHGLAS 213
                     *****************************************9985579*******9999*******9**************************** PP

                     HHHHHHHHHHHHHHHHHHHHHHHHHCS.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT.BTTCHHHHHHHHHHHHHHHHHHCTT---SS-TT- CS
  Ribonuc_red_sm 183 iielilrDeglHtdfagllfkelkeen.elenkeleeeveelikeavelEkefitdalpvellglnkedvkqYieyvadrllmnlgyeklYnvee 276
                       +++ rDe++H++fa +++ ++++e+ el+++ele +v++++ eave E +f+ d+l+  + gl+ +d+++Y+++vadr+l +lg+e++Y++  
      KIR61417.1 214 GTNWVFRDESMHMEFAFDVVDTVRAEEpELFDAELERQVRQMLAEAVECEVQFAADLLEQGVSGLSLADMREYLQHVADRRLATLGIEPMYHS-- 306
                     ********************************************************************************************9.. PP

                     --C CS
  Ribonuc_red_sm 277 enP 279
                      nP
      KIR61417.1 307 RNP 309
                     888 PP

>> DUF2204  Nucleotidyl transferase of unknown function (DUF2204)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.7e-05      0.15      73     102 ..     102     131 ..      75     133 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.7e-05
     DUF2204  73 gtvkliakvekeevevdlleNildlyvpee 102
                 g ++l  ++++e+v+v ++ N+ld yvp+e
  KIR61417.1 102 GRLYLSRQLFEEAVHVQFYLNLLDTYVPDE 131
                 667777899*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2433.45
//
Query:       KIR61418.1  [L=346]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-41  140.5   5.7    1.2e-39  136.3   3.1    2.2  2  Peripla_BP_3  Periplasmic binding protein-like domain
    3.4e-34  118.6   0.1    4.7e-34  118.1   0.1    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    3.1e-23   82.7   0.0    4.4e-23   82.2   0.0    1.2  1  Peripla_BP_4  Periplasmic binding protein domain
    3.4e-16   58.7   0.3    3.4e-16   58.7   0.3    1.9  2  LacI          Bacterial regulatory proteins, lacI family
    0.00054   19.3   0.2     0.0041   16.5   0.1    2.3  2  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
  ------ inclusion threshold ------
      0.061   13.1   0.1       0.26   11.1   0.0    2.1  2  HTH_23        Homeodomain-like domain
       0.18   11.7   0.6       0.71    9.7   0.1    2.2  2  TetR_N        Bacterial regulatory proteins, tetR family
       0.51   10.1   2.2        1.6    8.5   0.1    2.7  3  MerR          MerR family regulatory protein


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.017        37       2      62 ..      53     111 ..      52     141 .. 0.78
   2 !  136.3   3.1   5.3e-43   1.2e-39       2     166 .]     171     331 ..     171     331 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.017
                   .HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH. CS
  Peripla_BP_3   2 ehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaara 62 
                   ++L + + r+ia++    d ++++ +++ rg++ a+ ++g+ + ++   +dd+ +  +++ 
    KIR61418.1  53 RQLRAGRSRQIAIVV--LDVTNPFFTDVIRGAEAAVDKHGVMVVVCNSGDDDERERRHLEL 111
                   5677777899***99..6777899*******************999999888865555443 PP

  == domain 2  score: 136.3 bits;  conditional E-value: 5.3e-43
                   .HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHH.TTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEESSCCHHHHHHHHHCCTT CS
  Peripla_BP_3   2 ehLvelGhrriafiggegdrgasasderergfrqal.eelglplnetvvaaddpaaaaaaraalllqalklaalPtAviaasDelAlgvlqalreag 97 
                   +hLve+Ghrriaf+g  g+       +r++g+ qal   + l + +t+  +  + + +aar+     al +a++PtAv++a+D +Algvlq l+++g
    KIR61418.1 171 DHLVEQGHRRIAFVG--GPLSIAQVADRRAGVTQALeGNAELINVATPNLTVGA-GRSAARELT---ALPAADRPTAVMCANDLIALGVLQELTRQG 261
                   7**************..777778889999*******777777777776655544.333333322...3433349*********************** PP

                   --TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEE.E--EEE--GGG CS
  Peripla_BP_3  98 lrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvl.lppelveReSt 166
                   +rvP+d++++g+dd+e aa +  pl++vrqp e+lGr+aa+lll+ +++  + +++++   pelv+ReS+
    KIR61418.1 262 IRVPQDIAIVGYDDIEYAAAAAVPLSSVRQPREQLGRTAAQLLLEEVDNAGQHQHRHVvFQPELVVRESS 331
                   ******************999999***********************777777777777999******96 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.1   0.1   2.1e-37   4.7e-34       3     267 ..      62     317 ..      60     328 .. 0.93

  Alignments for each domain:
  == domain 1  score: 118.1 bits;  conditional E-value: 2.1e-37
                   EEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GG.HHHHHHHHHHT-EEEEESS--B-TTTS-E CS
  Peripla_BP_1   3 klglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdts.fdditakaesgipvialedaidapdgvPc 97 
                   ++ +v+ + ++Pff d++ g++ a  +hgv+v++ + g++++ + + ++ll+++++ g++i+  d+s ++++ +  + g pv+++++ +     + +
    KIR61418.1  62 QIAIVVLDVTNPFFTDVIRGAEAAVDKHGVMVVVCNSGDDDERErRHLELLEEQRVRGVLITPVDDSrGSRLEQLIRRGTPVVLVDRGAGRH-SLCS 157
                   688999999***********************************9*****************888888********************9988.9*** PP

                   EEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-....TT-SEEE-SSHH CS
  Peripla_BP_1  98 vipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh....Peidaivainde 190
                   v  dd   g  ++ +L+++gh+r ia ++gp s   ++ r+ G  +al++     +  +va+   ++ ++++a+ el   +    P+  a+++ nd 
    KIR61418.1 158 VAVDDVLGGRLAGDHLVEQGHRR-IAFVGGPLSIAQVADRRAGVTQALEGN---AELINVATPNLTVGAGRSAARELTALPaadrPT--AVMCANDL 248
                   ***********************.*************************98...6899*******************99998899**..******** PP

                   HHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH.-SEEEE-- CS
  Peripla_BP_1 191 aalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqki.nkerehpr 267
                   +alG  + l  +G ++ ++++     + v+yd ++ a +  +   pl +   pre+lGr+a++ +l+ + n+++ + r
    KIR61418.1 249 IALGVLQELTRQG-IRVPQDI-----AIVGYDDIEYAAAAAV---PLSSVRQPREQLGRTAAQLLLEEVdNAGQHQHR 317
                   *************.*******.....********77777665...77788999****************655554444 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.0   1.9e-26   4.4e-23       1     255 [.      63     309 ..      63     313 .. 0.87

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 1.9e-26
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CE CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerl 97 
                   i++vv d +npff+ +  g+e+a+++ g+ v+v  +++ d++++   +e + ++ v g++++pvd     + l+++  +G pVv +d+   ++   l
    KIR61418.1  63 IAIVVLDVTNPFFTDVIRGAEAAVDKHGVMVVVC-NSGDDDERERRHLELLEEQRVRGVLITPVDD-SRGSRLEQLIRRGTPVVLVDRG--AGRHSL 155
                   799**************************99997.999999************************5.66779*****************..9999** PP

                   EEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHH...TTTECEEEESS CS
  Peripla_BP_4  98 ayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqaleallt...anpldgilaan 191
                   + v+ d    G+l+++ l+e+   +   ++ + G ++ ++ ++r +g++++l++  ++  va   ++n +   +++a+ +l +   a+   ++++an
    KIR61418.1 156 CSVAVDDVLGGRLAGDHLVEQGHRR---IAFVGGPLSIAQVADRRAGVTQALEGNAELINVA---TPNLTVGAGRSAARELTAlpaADRPTAVMCAN 246
                   **********************955...9999**********************44444444...67899999999999888886455479****** PP

                   CCHHHCHHHHHHHTTT.TSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHT CS
  Peripla_BP_4 192 dgmaegalealeaagl.agkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallk 255
                   d +a+g+l+ l  +g+  +++ ++ +++++   +a ++  ++ +v q+  +lg++a++l+++ ++
    KIR61418.1 247 DLIALGVLQELTRQGIrVPQD-IAIVGYDDIEYAAAAAVPLS-SVRQPREQLGRTAAQLLLEEVD 309
                   ****************64443.66666666666666555555.8888889999999999988766 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.3   1.5e-19   3.4e-16       1      46 []       4      49 ..       4      49 .. 0.98
   2 ?   -1.9   0.1       1.3     3e+03       5      13 ..     193     202 ..     189     203 .. 0.67

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 1.5e-19
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                +ik+VAr AGVS  TVS vLn ++ V+e+tr rV+ a++el+Y+ n
  KIR61418.1  4 SIKEVARHAGVSIGTVSNVLNRPDLVAEATRRRVLDAIAELGYVRN 49
                59*****************************************998 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.3
                 HH.HHCTS-H CS
        LacI   5 VA.rlAGVSk 13 
                 VA r+AGV+ 
  KIR61418.1 193 VAdRRAGVTQ 202
                 663689*986 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.8e-06    0.0041      28      50 ..       3      25 ..       1      25 [. 0.92
   2 ?   -0.5   0.0      0.38   8.5e+02       6      17 ..     194     205 ..     192     209 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.8e-06
  HTH_Tnp_ISL3 28 rsvkavArqlgvSwtTVwrildr 50
                  +s+k+vAr+ gvS  TV ++l+r
    KIR61418.1  3 ASIKEVARHAGVSIGTVSNVLNR 25
                  7*******************987 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.38
  HTH_Tnp_ISL3   6 arrrsriTlrle 17 
                   a+rr++ T +le
    KIR61418.1 194 ADRRAGVTQALE 205
                   89******9998 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.26      19      40 ..       4      25 ..       3      27 .. 0.94
   2 ?   -3.0   0.1       3.2   7.1e+03       5      17 ..      32      45 ..      29      55 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
      HTH_23 19 svreIAreLgvsrrTvyrwlkr 40
                s++e+Ar+ gvs  Tv+++l+r
  KIR61418.1  4 SIKEVARHAGVSIGTVSNVLNR 25
                89*****************998 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.2
      HTH_23  5 reRlrillllae.G 17
                  R r+l + ae G
  KIR61418.1 32 ATRRRVLDAIAElG 45
                66888888888765 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00032      0.71      17      33 ..       3      19 ..       2      21 .. 0.90
   2 ?   -1.3   0.0      0.86   1.9e+03      18      31 ..     189     203 ..     187     204 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00032
                --HHHHHHHHTSSHHHH CS
      TetR_N 17 ttvreIAkrAGvskgal 33
                ++++e+A++AGvs g++
  KIR61418.1  3 ASIKEVARHAGVSIGTV 19
                589************97 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.86
                 -HHHHH.HHHTSSHH CS
      TetR_N  18 tvreIA.krAGvskg 31 
                 +++++A +rAGv+++
  KIR61418.1 189 SIAQVAdRRAGVTQA 203
                 566666257999987 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00072       1.6       1      16 [.       4      19 ..       4      20 .. 0.93
   2 ?   -1.8   0.0       1.2   2.8e+03      23      36 ..     119     132 ..     118     133 .. 0.78
   3 ?   -0.4   0.0      0.46     1e+03       1      12 [.     189     201 ..     189     203 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00072
                EHHHHHHHHTTTHHHH CS
        MerR  1 tIgevAeltGvsprtL 16
                +I+evA+ +Gvs+ t+
  KIR61418.1  4 SIKEVARHAGVSIGTV 19
                7***********9886 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
                 T.SSTSEEETTTSSE CS
        MerR  23 G.LipppeRtegGyR 36 
                 G Li +p++++ G R
  KIR61418.1 119 GvLI-TPVDDSRGSR 132
                 7689.9999998877 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.46
                 EHHHHHHH.HTTT CS
        MerR   1 tIgevAel.tGvs 12 
                 +I +vA++ +Gv+
  KIR61418.1 189 SIAQVADRrAGVT 201
                 6999988879998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2477.25
//
Query:       KIR61419.1  [L=599]
Description: hypothetical protein TK50_27695 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 4099.07
//
Query:       KIR61420.1  [L=338]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.6e-59  199.1   0.0    9.7e-59  199.0   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.19   11.1   0.6       0.35   10.2   0.3    1.7  2  KSHV_K8       Kaposi's sarcoma-associated herpesvirus (KSHV) 


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.0   0.0   1.1e-62   9.7e-59       2     292 ..      16     318 ..      15     320 .. 0.95

  Alignments for each domain:
  == domain 1  score: 199.0 bits;  conditional E-value: 1.1e-62
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-...............TTTHHHHHHHHHHHH-TTTGGG-EEEEEE..--SSSTTSSSS CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevY...............gkgqseellGealkksrkkreeviiatKv..dlrdaeiksgl 81 
                   + lGt+++g   + + + a +++ +al+aGin++DtA++Y                + ++ee+lG+al+    +r++v+++tK   + +++ +++gl
    KIR61420.1  16 IALGTATFGV--APDAARADAVVGAALDAGINLVDTANAYgnlphfdrpgvppaaERESAEEILGRALAG---RRDDVVLCTKAqePVGPGVNDRGL 107
                   89*******8..8999999999*********************************9**************...************************ PP

                   -HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT-HHHHTT CS
  Aldo_ket_red  82 skeniresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynllreleeeg 174
                   s+ ++ ++l++sl+rL+td+vD+++ H pdp++p +e +l+al++lv++Gk+r+ ++S f+++q  +a       + +++va+qv+y+l+ +  e++
    KIR61420.1 108 SRRHLFAQLDRSLRRLRTDHVDVFYAHHPDPATP-LETTLAALDDLVRAGKARHCALSTFPAWQTVHAlwicDDRRLHPPVALQVRYHLFARGVEAE 203
                   **********************************.**************************66666666**************************** PP

                   HHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHH CS
  Aldo_ket_red 175 llelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqle 271
                   +++l+   g+ ++a+spl+gGll g   + + +  +  +++++    t+ ++ aa +++e+a+  g    +la++++ls+p v  +i+ga n+e++ 
    KIR61420.1 204 IVPLADRFGLSVVAFSPLAGGLLAGAAARTRAHA-G--ESRWGGGAFTPSQQAAAAQVEEIAAAAGHRADELAVAWLLSRPTVAAAIVGAENPEEVA 297
                   ************************9999777765.3..445566789************************************************** PP

                   HHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 272 dnldalelklseeevaeldel 292
                   +  +a +l  ++e++a+ld++
    KIR61420.1 298 AAGRAAALIPDAEVLARLDAI 318
                   ******99999*******998 PP

>> KSHV_K8  Kaposi's sarcoma-associated herpesvirus (KSHV) K8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.45     4e+03     134     152 ..      84     102 ..      76     113 .. 0.76
   2 ?   10.2   0.3   3.9e-05      0.35     162     194 ..     305     336 ..     231     338 .] 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.45
     KSHV_K8 134 kfeeerlctkakqgagrpv 152
                 + ++  lctka++  g  v
  KIR61420.1  84 RRDDVVLCTKAQEPVGPGV 102
                 5566789999998777555 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 3.9e-05
     KSHV_K8 162 itphygeeltrgdavpaapitppyprvqrpaqp 194
                 + p   e l+r da+  a i  p prv rp+ p
  KIR61420.1 305 LIP-DAEVLARLDAIDVAEIREPKPRVARPTAP 336
                 334.3689**********************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2287.65
//
Query:       KIR61421.1  [L=869]
Description: alpha-L-rhamnosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.6e-129  430.2   0.0   7.3e-129  429.9   0.0    1.1  1  Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin gly
    3.6e-67  225.5   0.0    5.5e-67  224.9   0.0    1.3  1  Bac_rhamnosid_N  Alpha-L-rhamnosidase N-terminal domain
    7.2e-31  106.2   0.0    1.4e-30  105.2   0.0    1.4  1  Bac_rhamnosid    Bacterial alpha-L-rhamnosidase concanavalin-
    1.2e-19   69.9   0.0      2e-18   66.0   0.0    2.4  2  Bac_rhamnosid_C  Bacterial alpha-L-rhamnosidase C-terminal do


Domain annotation for each model (and alignments):
>> Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  429.9   0.0  1.6e-132  7.3e-129       2     340 .]     433     782 ..     432     782 .. 0.98

  Alignments for each domain:
  == domain 1  score: 429.9 bits;  conditional E-value: 1.6e-132
                      B-EEEEES-HHHHHHHHHHHHHHHHTBSSSB-S-SSSS----BHHHHHHHHHHHHHHB--HHHHHHHHHHHHHH--TTS--BSBSS--T....T CS
  Bac_rhamnosid6H   2 qtgsfecsdpllnrlhenvlwsvrsnflgvptDCPqrdErlgWtgdaqlfaptasylydveaflekwlrdladeqrengavptvaPevl....g 91 
                      +tg+fecsdpl+nrlh+nv+ws+r+nfl++ptDCPqrdErlgWtgd+q+fapta++lyd +++l++wl dla eq ++g+vp+ +P +     +
       KIR61421.1 433 RTGTFECSDPLVNRLHDNVVWSMRGNFLDIPTDCPQRDERLGWTGDIQVFAPTAAFLYDCAGMLSSWLVDLAAEQLPDGTVPYFVPRIPaprwE 526
                      69*************************************************************************************9899999 PP

                      --B--TTTTTHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTSBT..TB.--S-S--STT........-SS----HHHHHHHHHHHHHHH CS
  Bac_rhamnosid6H  92 alsetaeWadaivivpwelyetygDkeilkkqYesmkryldylkqrsdd.gleelskfqlgDWldpe...ardgaaktekalvataylvrslkl 181
                      + ++ta W+da+v+ pw+lye+ygD+ +l++qY+s+k+++d ++qr+ + +l+  s  qlgDWldp+   +++ +ak +++lvatay++rs+  
       KIR61421.1 527 PPQPTAVWGDAAVLTPWTLYERYGDRDVLARQYASAKAFVDLVDQRAGAdHLW-DSGYQLGDWLDPTappDDPEDAKADRYLVATAYFARSTGV 619
                      9**********************************************995566.99*************999********************** PP

                      HHHHHHHTTS..--HHHHHHHHHHHHHHHHHHB.-TTS-BTT--HHHHHHHHHTT-S-GGGH.HHHHHHHHHHHHHTTS-----TTTHHHHHHH CS
  Bac_rhamnosid6H 182 vakiaellgkeedakkyaalaeelkaafnkkyldsetgsvandtqtanalpLafglvpeaeraakvaerlvkkveenknhlstGfvGtpillrv 275
                      +a++ae+lg+++da++yaala+++++af+++y+  ++g + nd qt++al+L+fglvp    + ++a+rl++ vee++++++tGf+Gtp ++++
       KIR61421.1 620 LARMAEVLGRHADAQRYAALAAAVTEAFQRRYV-LPSGLLDNDAQTSYALALRFGLVPAGGPRRAAARRLAELVEEAGWRIATGFAGTPAICDA 712
                      *********************************.************************************************************ PP

                      HHHTT-HHHHHHHHH--SSSSSHHHHHTT-SS--SSTTSB-.....--TTS--S--SGGGGGHHHHHHHT CS
  Bac_rhamnosid6H 276 LsengeedlayalllqeeypswgymvknGaTtiwErWdsml.....npkemnSfnHyalgavaewlyenv 340
                      L++nge ++ay+lll++++psw+y+v+ GaTtiwErWds l     np++m+SfnHyalgava+wl+++v
       KIR61421.1 713 LADNGEVETAYRLLLSTDCPSWLYPVTTGATTIWERWDSLLpdgtvNPGQMTSFNHYALGAVADWLHRTV 782
                      ***************************************99**************************987 PP

>> Bac_rhamnosid_N  Alpha-L-rhamnosidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.9   0.0   1.2e-70   5.5e-67       2     171 ..     150     319 ..     149     320 .. 0.99

  Alignments for each domain:
  == domain 1  score: 224.9 bits;  conditional E-value: 1.2e-70
                      -EEEEEEEEEEESEEEEEETTEE-SSBSSBT----TTTEEEEEEEE-TTT--SEEEEEEEEEE-HHHHS--TTS...S-SS-SS-EEEEEEEEE CS
  Bac_rhamnosid_N   2 kikrarlyitaLGvyelelNGkrvgdevLaPgwtdyrkrvqyqtyDvtsllregeNaigvlvgeGwyagrvgfgekrrstygkepallaqleve 95 
                      +++rar+y+taLGvyelelNG rvgd++LaPgwt+y++r++yqtyDvt llr g Na+g +++eGwyagr+gf++++r+ yg++ +llaqle+e
       KIR61421.1 150 EVTRARVYATALGVYELELNGARVGDQILAPGWTSYHHRLRYQTYDVTGLLRPGRNAVGGWLAEGWYAGRLGFHGGHRTVYGSRIGLLAQLEIE 243
                      799******************************************************************************************* PP

                      ETTS-EEEEE-STT-EEE--SEEEEETTTEEEEEGGG--TTTTSTT---TTSEE-EE--S--SEEEE--S--EEEE CS
  Bac_rhamnosid_N  96 yedgtkeviatdtsWkvtegpiteseiydGEtyDarkeikgwsepgfddskwnpvkvlkvpegkleaqeappvrvt 171
                      y+dg+++ +atd sW++++gp+t+s ++dGE++Dar+e++gws+pgf ++ w pv+vl++p+++l+a+ +ppvr +
       KIR61421.1 244 YADGRRQLVATDGSWRAATGPLTASGLLDGEHHDARREPTGWSSPGFAADGWTPVRVLPRPASALVAPTGPPVRCV 319
                      *************************************************************************987 PP

>> Bac_rhamnosid  Bacterial alpha-L-rhamnosidase concanavalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   3.2e-34   1.4e-30       5     100 ..     332     426 ..     329     428 .. 0.94

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 3.2e-34
                    TTEEEEEEEEEEEEEEEEEE---TT-EEEEEEESEE-TTS-EE-GGGTT---EEEEE----SSEEE--SS--EEEEEEEEES-SS---GGGEEEEE CS
  Bac_rhamnosid   5 dgttvlDlGqnlaGvirlkvkgeeGtevklrfgEvLeddgevdtrnlrkakatdeyilkGreeeawqpsftfhGfrYveiegladeladesltglv 100
                     g+++lD+Gqnl+G++r++v+g++G++v+lr++EvL+ dge+  r lr akatd y+l+G ++e+w+p+ftfhGfrY e++g++ e  +  + ++v
     KIR61421.1 332 GGRIILDFGQNLVGRLRITVTGPAGQTVRLRHAEVLQ-DGELFVRALRGAKATDSYTLRGGGVETWEPRFTFHGFRYAEVTGWPGEFDPAAVVARV 426
                    5789*********************************.*********************************************9998888777776 PP

>> Bac_rhamnosid_C  Bacterial alpha-L-rhamnosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.082   3.7e+02      25      61 ..     324     361 ..     290     365 .. 0.75
   2 !   66.0   0.0   4.4e-22     2e-18       1      73 [.     784     856 ..     784     861 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.082
                      EEEEEEETTEEEEEEEEEE.TTEEEEEEEE-TT-EEEE CS
  Bac_rhamnosid_C  25 vkasfeslyGkikvdWkre.dgkftlnvsvPanttaeV 61 
                      v + ++ + G+i  d+ ++  g+++++v+ Pa+ t ++
       KIR61421.1 324 VAEVVDATGGRIILDFGQNlVGRLRITVTGPAGQTVRL 361
                      4567888999999999999999******9999988765 PP

  == domain 2  score: 66.0 bits;  conditional E-value: 4.4e-22
                      --EECCGGGTEEEE----BTTB-EEEEEEEETTEEEEEEEEEETTEEEEEEEE-TT-EEEEEEE-SSGGG-EE CS
  Bac_rhamnosid_C   1 GirpsepGfkkiviaPkpggdlksvkasfeslyGkikvdWkredgkftlnvsvPanttaeVvLpgekeekeve 73 
                      G+ p epG+++ +++P+pgg+l++++a+  ++yG+ +v W++ dg++ ++v+vPa++ta+V Lpg++ +++ +
       KIR61421.1 784 GLAPAEPGYRRLLVRPRPGGGLRHARAALLTPYGPAAVGWRLADGELAVEVTVPAGATARVELPGAAPTEVGS 856
                      899**************************************************************99887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (869 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 5637.64
//
Query:       KIR61422.1  [L=128]
Description: hypothetical protein TK50_27715 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-12   45.9   1.3    5.6e-12   45.2   0.1    1.9  2  Cupin_2          Cupin domain
    1.3e-06   28.3   0.1    1.8e-06   27.9   0.1    1.2  1  AraC_binding     AraC-like ligand binding domain
    0.00041   20.3   0.0    0.00055   19.9   0.0    1.1  1  MannoseP_isomer  Mannose-6-phosphate isomerase
     0.0018   17.9   0.0     0.0031   17.2   0.0    1.4  1  Cupin_3          Protein of unknown function (DUF861)
     0.0024   18.1   0.0     0.0029   17.8   0.0    1.2  1  CENP-C_C         Mif2/CENP-C like
  ------ inclusion threshold ------
      0.022   14.5   0.2      0.043   13.5   0.2    1.5  1  AraC_binding_2   AraC-binding-like domain
      0.089   12.3   0.1      0.093   12.2   0.1    1.1  1  Inositol_P       Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.1   2.2e-15   5.6e-12       8      68 ..      33      93 ..      26      97 .. 0.86
   2 ?   -0.7   0.1      0.46   1.2e+03       5      22 ..      99     114 ..      95     117 .. 0.56

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 2.2e-15
                TE.EEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEE CS
     Cupin_2  8 Ge.sapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparll 68
                 +  + +h+H+   e+  V+eG++++ v+ +e+++ +Gd+v +pag++H++  + ++++rl+
  KIR61422.1 33 AGfRFDRHHHSCP-EYWAVVEGRARVAVGAQEYDVAPGDLVCTPAGVEHDILRAYTDDLRLF 93
                4556778888888.*************************************88888888886 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.46
                 EETTE.EEEEECSSSEEEE CS
     Cupin_2   5 lppGe.sapshrHpgedef 22 
                 +p Ge     h H++  ef
  KIR61422.1  99 VPEGEpA--GHLHREP-EF 114
                 5555533..3666665.55 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.1   7.1e-10   1.8e-06      12      61 ..      33      82 ..      28      96 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 7.1e-10
                  TT-SEEEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEE CS
  AraC_binding 12 pdhsfpphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdy 61
                   +++f++h+h+  + + v+eG++r+ ++ ++yd+ pGdl+  p g+ Hd+
    KIR61422.1 33 AGFRFDRHHHSCPEYWAVVEGRARVAVGAQEYDVAPGDLVCTPAGVEHDI 82
                  5789********************************************98 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.1e-07   0.00055      78     123 ..      37      83 ..      31      95 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.1e-07
  MannoseP_isomer  78 lqkhhhra.ehWvvvkGtakvtvddevlllkenestyiplgaihrle 123
                       ++hhh + e+W vv+G a+v v+ +++ +   + +  p+g+ h + 
       KIR61422.1  37 FDRHHHSCpEYWAVVEGRARVAVGAQEYDVAPGDLVCTPAGVEHDIL 83 
                      567888644*******************************9999875 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.2e-06    0.0031      27      61 ..      46      79 ..      23      87 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-06
                EEEEEEECEEEEEETTTEEEEEETTEEEEE-TTEE CS
     Cupin_3 27 EfcyileGevkvtpeggetvelraGDlvvlpkgls 61
                E+  ++eG+ +v++ g +++ + +GDlv  p+g +
  KIR61422.1 46 EYWAVVEGRARVAV-GAQEYDVAPGDLVCTPAGVE 79
                7889**********.9999**************86 PP

>> CENP-C_C  Mif2/CENP-C like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.1e-06    0.0029      29      83 ..      40      94 ..      20      96 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.1e-06
                E--SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE CS
    CENP-C_C 29 nskkatlvFyViqGrvevtvsktsfvigkgsvFqvPagneysieNklnkeaklfF 83
                + ++    + V++Gr +v v  +++ +++g+    Pag e  i   + ++ +lfF
  KIR61422.1 40 HHHSCPEYWAVVEGRARVAVGAQEYDVAPGDLVCTPAGVEHDILRAYTDDLRLFF 94
                5555555678********************************************9 PP

>> AraC_binding_2  AraC-binding-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   1.7e-05     0.043      62     131 ..      51     120 ..      48     124 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
  AraC_binding_2  62 lsGraeveqggrevvlgpgdavvldpgrpyrlrwsadceqlvlripralLerplraplrfaprldldsga 131
                     ++Gra+v +g++e++++pgd+v+  +g   ++  + + +  ++ + +a+ e ++ ++l+ +p++ l + +
      KIR61422.1  51 VEGRARVAVGAQEYDVAPGDLVCTPAGVEHDILRAYTDDLRLFFFVAAVPEGEPAGHLHREPEFALGHDV 120
                     78*********************99998777633333333333333455555555555555555555555 PP

>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.6e-05     0.093     192     235 ..      39      79 ..      19     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.6e-05
                 BESSHHHHHHHHHHTSTSEEEEEC.EBHHHHHHHHHHHHHTTEE CS
  Inositol_P 192 svgssalklaavaeGkadaylefgrekkWDhAAGeaileeaGGv 235
                 ++  s+ ++ av+eG+a + + ++   ++D+A+G ++++ aG +
  KIR61422.1  39 RHHHSCPEYWAVVEGRARVAVGAQ---EYDVAPGDLVCTPAGVE 79 
                 5567888999*********88777...99************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 867.17
//
Query:       KIR61423.1  [L=139]
Description: cupin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-17   62.5   0.3    3.8e-17   61.7   0.3    1.4  1  Cupin_2          Cupin domain
    6.8e-08   32.1   0.0    7.7e-07   28.7   0.0    2.3  2  Cupin_3          Protein of unknown function (DUF861)
    1.3e-07   31.6   0.2    1.6e-07   31.3   0.2    1.1  1  AraC_binding     AraC-like ligand binding domain
    2.9e-06   27.0   0.0    4.1e-06   26.5   0.0    1.3  1  Cupin_1          Cupin
    0.00017   21.5   0.0    0.00022   21.1   0.0    1.1  1  MannoseP_isomer  Mannose-6-phosphate isomerase
    0.00033   20.8   0.0    0.00048   20.3   0.0    1.2  1  CENP-C_C         Mif2/CENP-C like
    0.00078   19.0   0.0    0.00096   18.7   0.0    1.1  1  Cupin_4          Cupin superfamily protein
  ------ inclusion threshold ------
      0.031   14.5   0.0      0.041   14.1   0.0    1.1  1  ARD              ARD/ARD' family


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.3   1.7e-20   3.8e-17       2      71 .]      39     108 ..      38     108 .. 0.95

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 1.7e-20
                 EEEEETTEEEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEEE CS
     Cupin_2   2 lvelppGesapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllvvy 71 
                  v + pG+ +++h H g+de++yV++G g+ tv++ e+ + +Gd+vy+p+gt H   N +   +rllv y
  KIR61423.1  39 EVIINPGQGHGRHLHAGADELIYVVSGAGVQTVGDDEFAIAEGDMVYIPRGTLHSTMNSTWRTLRLLVTY 108
                 6889******************************************************999999999865 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   3.5e-10   7.7e-07       6      65 ..      34     100 ..      30     104 .. 0.81
   2 ?    0.5   0.0      0.23   5.1e+02      36      64 ..     106     134 ..     105     136 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 3.5e-10
                 CCEEEEEEEECEEE...EECESSEEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTE.....EECCC CS
     Cupin_3   6 vfswgiwectpGkf...rltyeedEfcyileGevkvtpeggetvelraGDlvvlpkgl.....sgtwd 65 
                 v s+g +  +pG++   +l+ ++dE++y+++G    t+ g  ++++ +GD+v++p g+      +tw+
  KIR61423.1  34 VNSQGEVIINPGQGhgrHLHAGADELIYVVSGAGVQTV-GDDEFAIAEGDMVYIPRGTlhstmNSTWR 100
                 56666677777776111567899***************.9999**************98777777776 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.23
                 EEEEETTTEEEEEETTEEEEE-TTEEECC CS
     Cupin_3  36 vkvtpeggetvelraGDlvvlpkglsgtw 64 
                 v++tp g+e+   +  D+ + p+g  ++w
  KIR61423.1 106 VTYTPGGEEQALTGLPDFCRHPAGEVVAW 134
                 78899555667777789999999998888 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.2     7e-11   1.6e-07      12      77 ..      44     110 ..      37     128 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 7e-11
                   TT-SEEEETT-.SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE- CS
  AraC_binding  12 pdhsfpphvhd.eyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfe 77 
                   p++++++h h    +++yv++G+g  ++++ ++ + +Gd++ +p+g++H+   ++   +++ + y +
    KIR61423.1  44 PGQGHGRHLHAgADELIYVVSGAGVQTVGDDEFAIAEGDMVYIPRGTLHSTMNSTWRTLRLLVTYTP 110
                   8999******9666***********************************987777556666555555 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.8e-09   4.1e-06      45     103 ..      47      98 ..      33     125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.8e-09
                 EEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEES CS
     Cupin_1  45 lllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsg 103
                  +  h h  a e++yv+ G g  ++v  ++        + eGd++++P+g  h ++ns+
  KIR61423.1  47 GHGRHLHAGADELIYVVSGAGV-QTVGDDE------FAIAEGDMVYIPRGTLHSTMNST 98 
                 56679*****************.7777775......78*******************96 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     1e-07   0.00022      68     132 ..      40     104 ..      31     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1e-07
  MannoseP_isomer  68 itvkPgeklslqkhhhraehWvvvkGtakvtvddevlllkenestyiplgaihrlenpGkiplel 132
                      ++++Pg+    + h    e   vv+G+   tv+d+++ + e + +yip g++h+  n    +l+l
       KIR61423.1  40 VIINPGQGHGRHLHAGADELIYVVSGAGVQTVGDDEFAIAEGDMVYIPRGTLHSTMNSTWRTLRL 104
                      6788999999999999999999********************************99988777776 PP

>> CENP-C_C  Mif2/CENP-C like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.1e-07   0.00048      14      77 ..      37     100 ..      29     107 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.1e-07
                 EEEEEE-TCCCEE.EEE--SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS CS
    CENP-C_C  14 sGilkLppgaeKk.kknskkatlvFyViqGrvevtvsktsfvigkgsvFqvPagneysieNklnk 77 
                  G ++++pg+  + + ++  + l  yV+ G+   tv + +f i++g++ ++P+g   s+ N + +
  KIR61423.1  37 QGEVIINPGQGHGrHLHAGADEL-IYVVSGAGVQTVGDDEFAIAEGDMVYIPRGTLHSTMNSTWR 100
                 57788888555540445555554.5899999999*********************9999998755 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.3e-07   0.00096     176     202 ..      74     101 ..      65     123 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.3e-07
                 EEEEE-TT-EEEE-TT-EEEEEBBT.-C CS
     Cupin_4 176 edfvLepGDlLYlPrgviHqgvaed.es 202
                 ++f ++ GD+ Y+Prg+ H+      ++
  KIR61423.1  74 DEFAIAEGDMVYIPRGTLHSTMNSTwRT 101
                 6899***************987665555 PP

>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.8e-05     0.041      89     134 ..      52      93 ..      49     109 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-05
         ARD  89 lhe.deeirliveGtgyFdvrskdeawirvlvekGDLivlPagiyhr 134
                 lh   +e+ ++v+G+g+  v   d+++    + +GD++ +P g+ h 
  KIR61423.1  52 LHAgADELIYVVSGAGVQTVG--DDEFA---IAEGDMVYIPRGTLHS 93 
                 554258999*******99885..67777...89***********994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 966.93
//
Query:       KIR61424.1  [L=274]
Description: hypothetical protein TK50_27725 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.4e-132  440.1   0.1   2.7e-132  439.9   0.1    1.0  1  PEP_hydrolase  Phosphoenolpyruvate hydrolase-like


Domain annotation for each model (and alignments):
>> PEP_hydrolase  Phosphoenolpyruvate hydrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  439.9   0.1  1.5e-136  2.7e-132       2     266 ..       6     270 ..       5     271 .. 0.99

  Alignments for each domain:
  == domain 1  score: 439.9 bits;  conditional E-value: 1.5e-136
  PEP_hydrolase   2 ilkrlrkkikkgkpiigagaGtGlsakaaeaggaDliliynsGrfrmaGrgslagllpygnaNeivvemakevlpvvketpvlaGvcatDpfrkle 97 
                     l+rlr++ ++g+pi+gagaGtGlsak+aeaggaDli+iynsGr+rmaGrgslagllpyg+aN+ivvema+evlpvv++tpvlaGvc+tDpfr ++
     KIR61424.1   6 ALRRLREQAAAGRPIVGAGAGTGLSAKCAEAGGADLIIIYNSGRYRMAGRGSLAGLLPYGDANAIVVEMAAEVLPVVRDTPVLAGVCGTDPFRLMP 101
                    689********************************************************************************************* PP

  PEP_hydrolase  98 eflkelkelGfaGvqNfPtvglidgefrenleetglgyekEvelikkAheldllttayvfneeearamaeaGadvivahlGlttggsigaktalsl 193
                    +fl+el ++Gf+GvqNfPtvglidg f +nl etg+g+++Eve+i+ A+e++llt++yvf++e+a+am++aGadv+v h+Gltt+g+iga+tal+l
     KIR61424.1 102 RFLDELAAIGFTGVQNFPTVGLIDGVFGQNLAETGMGFDLEVEMIRLAAERGLLTCPYVFDPEQAAAMTAAGADVLVPHMGLTTSGTIGARTALTL 197
                    ************************************************************************************************ PP

  PEP_hydrolase 194 eeavelvqeiadaakevnpdvivlvhGGpiaepedaeyvlertkgvkGfigassleRlpvekaikettkeFks 266
                    +e+ve++q+++daa +vnpdv+vl+hGGpiaep+da+yvl++t+gv Gf+gass+eRlpve+a+++++++Fks
     KIR61424.1 198 DESVERIQAMRDAAVAVNPDVLVLCHGGPIAEPDDAAYVLAHTTGVVGFFGASSMERLPVERALTAQVRAFKS 270
                    ************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1955.19
//
Query:       KIR61425.1  [L=312]
Description: hypothetical protein TK50_27745 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-43  146.9   0.0      5e-43  146.5   0.0    1.1  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    2.9e-05   24.6   0.7    4.9e-05   23.8   0.7    1.4  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    7.2e-05   22.5   0.1    0.00013   21.6   0.1    1.5  1  ApbA            Ketopantoate reductase PanE/ApbA
    0.00013   21.3   0.4    0.00019   20.8   0.4    1.2  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0021   18.3   0.0     0.0038   17.4   0.0    1.4  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
     0.0049   17.4   0.1      0.012   16.1   0.1    1.7  1  XdhC_C          XdhC Rossmann domain
     0.0075   15.0   0.0       0.01   14.6   0.0    1.2  1  Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
  ------ inclusion threshold ------
      0.018   14.9   0.7      0.033   14.1   0.7    1.5  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.031   13.9   0.0       0.19   11.4   0.0    1.9  1  2-Hacid_dh      D-isomer specific 2-hydroxyacid dehydrogenase
      0.045   13.8   0.1      0.074   13.1   0.1    1.3  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
       0.07   12.7   0.0       0.15   11.6   0.0    1.6  1  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
        0.1   13.2   1.6       0.84   10.3   1.6    2.3  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
       0.13   12.4   0.1       0.24   11.5   0.1    1.5  1  AdoHcyase_NAD   S-adenosyl-L-homocysteine hydrolase, NAD bind
       0.22   10.9   0.0       0.36   10.1   0.0    1.3  1  ThiF            ThiF family


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.5   0.0   3.9e-46     5e-43       2     178 .]     111     277 ..     110     277 .. 0.96

  Alignments for each domain:
  == domain 1  score: 146.5 bits;  conditional E-value: 3.9e-46
                   HHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE- CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslh 98 
                   a+lla++r+l+ + e++r+++w   ++ +g++l+g++v+++G+G+IG++va +l++fg++v+ + r+ ++        ++ + + ++ ae D+v+l+
    KIR61425.1 111 AVLLAHHRELTFFAEAQRRRRW---ERRTGRSLAGSRVAVLGAGDIGRHVAGLLRPFGCEVTLVGRRARAGV------LSTAGFAAVAAEQDVVVLA 198
                   789*******************...999***************************************77443......466899************* PP

                   S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  99 lpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   lp+ p+t  + +a+ la +++ga+l+N++RG+lvd++aLl+    g+++ a lDv+++eplp+d+pl+++pnv+ltPH+a
    KIR61425.1 199 LPAGPDTDRIADARFLAGLRDGAVLVNAGRGTLVDTDALLRETGGGRLH-AILDVTDPEPLPPDHPLWDAPNVTLTPHVA 277
                   ************************************************8.99**************************98 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.7   3.9e-08   4.9e-05       1      34 [.     144     177 ..     144     189 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3.9e-08
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkl 34 
                 +v+v+G+G+ig  +Ag l+ +g++Vt+v r+ + 
  KIR61425.1 144 RVAVLGAGDIGRHVAGLLRPFGCEVTLVGRRARA 177
                 79***************************99875 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1     1e-07   0.00013       1      51 [.     145     195 ..     145     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1e-07
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETTCEEE CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrltseggeei 51 
                 +a+lGaG iG+ +a+ L   g++vtl++r++r+  l+++G+     +++++
  KIR61425.1 145 VAVLGAGDIGRHVAGLLRPFGCEVTLVGRRARAGVLSTAGFAAVAAEQDVV 195
                 69***************88************99999999998887774444 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.4   1.5e-07   0.00019     137     178 ..     130     178 ..      97     195 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.5e-07
                  CCSS-T.......SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 137 klkllp.......krivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  ++ +++        r++v G+G iG  +A+ l+ +g+evtlv +r r  
   KIR61425.1 130 RRWERRtgrslagSRVAVLGAGDIGRHVAGLLRPFGCEVTLVGRRARAG 178
                  33333355577789*****************************999875 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     3e-06    0.0038       2     102 ..     145     239 ..     144     249 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3e-06
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstssped 96 
                    ++++G G +G++ a  l   g++v+++ r+       + +g+  ++  ++++a+ dvv++ ++ag+++d + +   l+ l+ g++l++ +     d
     KIR61425.1 145 VAVLGAGDIGRHVAGLLRPFGCEVTLVGRR-------ARAGVLSTAGFAAVAAEQDVVVLALPAGPDTDRIADArFLAGLRDGAVLVNAGRGTLVD 233
                    899***********************9998.......445566666678899999******************9999***********99888877 PP

                    HHHHHH CS
  NAD_binding_2  97 trelak 102
                    t  l +
     KIR61425.1 234 TDALLR 239
                    776655 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   9.1e-06     0.012       1      57 [.     145     206 ..     145     239 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9.1e-06
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG..-GGG-TT-SE...-EEEE--S-HHHH CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefa..tkerfpeade...tavvvlthdhklD 57 
                 ++++Gag++++++a l++ +g++vt+v  r+++   +++ f+++++    +v++l  ++++D
  KIR61425.1 145 VAVLGAGDIGRHVAGLLRPFGCEVTLVGRRARAGvlSTAGFAAVAAeqdVVVLALPAGPDTD 206
                 579*************************9996445555555533335533344444445555 PP

>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   8.1e-06      0.01     266     320 ..     136     191 ..     109     212 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.1e-06
                     HHHHHTT-EEEEECSSHHHHHHHHHHHHHT-EEEEEEESSS-HHHH.HHHHHHS.T CS
  Oxidored_nitro 266 yheylagkrvaiygdpdrvvalarllkelGmevvaagtetahrdde.erlkaelee 320
                     +   lag rva+ g +d+  ++a ll+  G+ev ++g + +   +  ++  a ++e
      KIR61425.1 136 TGRSLAGSRVAVLGAGDIGRHVAGLLRPFGCEVTLVGRRARAGVLStAGFAAVAAE 191
                     4469********************************99888766664444444444 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.7   2.6e-05     0.033       2      34 ..     145     177 ..     144     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.6e-05
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseea 34 
                 vav+GaG +G+ +a ++   g+eV+lv ++++a
  KIR61425.1 145 VAVLGAGDIGRHVAGLLRPFGCEVTLVGRRARA 177
                 9**************************987655 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014      0.19      53     133 ..      62     308 ..      42     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
                 HHHHHHHTT--EEEESSSSCTTB-HHHHHHT..T-EEEE-TTTTHHHHHHHH............................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx............................................... RF
  2-Hacid_dh  53 aevlealpkLkviaragvGvDnvDldaaker..GilVtnvpgystesvAElt............................................... 102
                  ++l +lp ++++++ ++G+D     ++ ++  G+ ++n+ g++   vAE +                                               
  KIR61425.1  62 LALLPRLPHVRLVQTLNAGYDG----WIGRLppGVGLSNARGAHGAVVAEWVvavllahhreltffaeaqrrrrwerrtgrslagsrvavlgagdigrh 156
                 4678999999999999999996....6666555999*************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  KIR61425.1 157 vagllrpfgcevtlvgrraragvlstagfaavaaeqdvvvlalpagpdtdriadarflaglrdgavlvnagrgtlvdtdallretgggrlhaildvtdp 255
                 *************************************************************************************************** PP

                 ......................T-BHHHHHHHHHHHHHHHHHHHTTCCGTTBC CS
                 ......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ......................aaTeeaqeniaeeaaenlvaflkgespanav 133
                                       ++Te    ++ + aa ++  f++g++p+n v
  KIR61425.1 256 eplppdhplwdapnvtltphvaGVTEGIAARAWAVAAAQIDLFAHGRRPDNLV 308
                 *************************************************9988 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   5.8e-05     0.074       8      46 ..     138     175 ..     132     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.8e-05
                   S..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSH CS
  Shikimate_DH   8 eslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtl 46 
                    sl++++v ++GaG +++ va  L   g++ v+ ++R  
    KIR61425.1 138 RSLAGSRVAVLGAGDIGRHVAGLLRPFGCE-VTLVGRRA 175
                   48999************************9.99998864 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00012      0.15       2      69 ..     140     200 ..     139     229 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S- CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliP 69 
                 l g ++av+G G  G+  a  lr  g++v++  r+ ++         ++++  a ++++ dvv++ +P
  KIR61425.1 140 LAGSRVAVLGAGDIGRHVAGLLRPFGCEVTLVGRRARA-------GVLSTAGFAAVAAEQDVVVLALP 200
                 67899************************976665542.......22333333344455566666555 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.6   0.00066      0.84       1      71 [.     144     201 ..     144     226 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00066
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-H CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkp 71 
                    +++++GaG++g+ +a  l   g    e++++++r    +           ta+  + +a+e+dvvvla++ 
     KIR61425.1 144 RVAVLGAGDIGRHVAGLLRPFG---CEVTLVGRRARAGV---------LSTAG-FAAVAAEQDVVVLALPA 201
                    69********************...99998855544433.........33442.33445569999999985 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00019      0.24      15      52 ..     134     171 ..     131     240 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
                    HHH-S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE CS
  AdoHcyase_NAD  15 ratdvllaGkvavvaGyGdvGkGcaaslkglGarvivt 52 
                    r t   laG  + v G Gd+G+  a  l+ +G+ v++ 
     KIR61425.1 134 RRTGRSLAGSRVAVLGAGDIGRHVAGLLRPFGCEVTLV 171
                    6777889**************************99864 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00028      0.36      14      42 ..     138     166 ..     116     171 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00028
                 HHHHTSEEEEE--SHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  14 ekLrdskvllvGaGglGsellknLalsGv 42 
                 + L+ s+v+++GaG +G  ++ +L   G+
  KIR61425.1 138 RSLAGSRVAVLGAGDIGRHVAGLLRPFGC 166
                 45999****************99988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2119.58
//
Query:       KIR61426.1  [L=294]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-15   55.9  21.1    4.3e-15   55.9  21.1    1.9  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   1.0     0.018   3.2e+02      22      62 ..      20      81 ..      14      84 .. 0.77
   2 !   55.9  21.1   2.4e-19   4.3e-15       1     176 [.      82     283 ..      82     292 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.018
  BPD_transp_1 22 pliivllslPsfvlaillvlvf........................vilsilghlilpviillll 62
                  +++ +++ +Ps++    l+++f                        ++ ++l +++++++++++ 
    KIR61426.1 20 FMYTAIMLVPSVW---SLFYAFstgnviegfrpvgldnfrkllddpIVPTSLRFTVTYALVITVG 81
                  5678899999999...5555566678888889988888888888888888888888888888776 PP

  == domain 2  score: 55.9 bits;  conditional E-value: 2.4e-19
  BPD_transp_1   1 gillGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf.....................vilsilghlilpviillllsaapyvrlirr 73 
                   +illG+ +a   ++  ++ + l+r+l++++  lP++++++l+  +f                      ++s    +++ +i++ l+ ++++  ++ +
    KIR61426.1  82 QILLGLALAlfyVFVLRRASALIRTLVFFPVVLPTVAVGLLFSKMFaiapqtgpanslldvlgfgatDWFSTGSKAFWVIILMDLWRTMGFYAVLLY 178
                   589999999998888999999********************999999*****************998777777788888****************** PP

  BPD_transp_1  74 aalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis....nggvlalviavl 166
                    +l  +p +  e ar++Ga  w+++r++vlP+alp++i+++i+++ ++l+ +  +  l+++++ ++++   + ++++s+ +    +    +l+i++ 
    KIR61426.1 179 TGLLDIPGEVLESARLDGAVGWRLLRHIVLPLALPVLISSIIFSLNSSLKVFDSVVALTNGGPGTSTTPLNLYMFQTSFFYsdygY--GSTLAILIT 273
                   ************************************************99997777666655544444444444444444458533..333333333 PP

  BPD_transp_1 167 llnlvadilq 176
                    ++l + ++ 
    KIR61426.1 274 TICLTVTLFL 283
                   3333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2071.80
//
Query:       KIR61427.1  [L=306]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-15   57.0  17.0    2.1e-15   57.0  17.0    2.2  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.038   6.7e+02     162     172 ..      43      53 ..      25      78 .. 0.60
   2 !   57.0  17.0   1.2e-19   2.1e-15       5     175 ..     117     290 ..     113     294 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.038
  BPD_transp_1 162 viavlllnlva 172
                   viavll+++++
    KIR61427.1  43 VIAVLLVITIY 53 
                   22222222222 PP

  == domain 2  score: 57.0 bits;  conditional E-value: 1.2e-19
  BPD_transp_1   5 Gilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqif 98 
                   G+ a+     + +k+++ ++ li  +++lP  +++++l+ + ++  +l+++ lp+i++++ + +p+++++++a++r++p++l ea++++Ga+ ++ f
    KIR61427.1 117 GAAAGfalEVMVWKGRNTVLLLIVGGMMLPLQLILLPLFTI-YFRLGLTDSLLPLILTYVGHGLPLTVFLMAAYFRAVPRELFEASTLDGAGVFRAF 212
                   44444555588899***********************9966.8899*************************************************** PP

  BPD_transp_1  99 rkvvlPnalppiitglilafggllggavlleflgswpGlgt.llleailgydyseisnggvlalviavlllnlvadil 175
                   + v lP++   ++t+ +l f +++++ ++++++ +++ l+t ++   + +  y ++++g+++a+++ ++l +lv++++
    KIR61427.1 213 FSVGLPMVRNGLLTLGLLMFFSVWNDLLIALTFNTSKELSTiQVGLLNFNGEYGSTLYGPLFAGICTTVLGILVVYVF 290
                   **********************************99975421344444455555555999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2138.47
//
Query:       KIR61428.1  [L=284]
Description: hypothetical protein TK50_27765 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-15   58.0  13.5    1.6e-15   57.7  13.5    1.1  1  Amidohydro_2  Amidohydrolase


Domain annotation for each model (and alignments):
>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7  13.5   8.8e-20   1.6e-15       1     262 [.       3     247 ..       3     271 .. 0.82

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 8.8e-20
                   EEEEEEE..SHHHCCCCCCGGCTSCCCHHHHHCHHTSSECCCEHCHHHHHHHHTSHHCHHHHHHHH..HHHHHH.HHHHHHHHCTTCBECEEECTSS CS
  Amidohydro_2   1 iDvHaHllppeaairddgepngfdpeerlafmkragvdpqlaspeallvlnaaagiaravivaalc..rgannr.vlaeaakrpdrfvggaavvpld 94 
                   +D+H+H                  +++r+++ +  + d ++  +e ll ++aaag++rav+vaa+   ++ nn+ v+a +a++p+r+  +a+++ ++
    KIR61428.1   3 VDAHTH------------------AWPRWPYRPPVPDDATRGGVEVLLHEMAAAGVDRAVVVAAEIdrNADNNDyVAAAVARHPGRLHHFADLDSRW 81 
                   79****..................56699999999***************************999644555555156777789************** PP

                   HCH.....HHHHHHHHHHHTTECEEEEESSTTTCCTTTCGGHHHHHHHHHHHT-EEEEE....CHHHCHHHHHHHHHHHHHHHCCHHHHCTTSEEEE CS
  Amidohydro_2  95 ped.....aaaeleraveelgfkGvrlnphvggddllgdrldrpifealeelglpvdihtGpspewlfggpqettraiqplllsgvarkfPnlkivl 186
                    ++     aa++l   ++ + + G+ +++ + +d +l+ +  r +f+a+e++gl   + +G               +    +l  +a+  P+l+i  
    KIR61428.1  82 SPRhhtagAADRLAALADRYPLAGISHYLGPDNDGWLRSADARALFAAAERRGLLMGLAAG---------------PAWHADLRALAATVPGLPILC 163
                   88889999***************************************************66...............8888999************** PP

                   SGGGTT...TTCHHHHHHHH...HHHHHCCEEECCGHHH..SSEEECCHHCHHH......HHHHHHHH-GGGEEEE--BTSTTSTSCTTH CS
  Amidohydro_2 187 aHgGgp...serlraalell...arrpnvyvklsglyte..llyfdspladppa......larlieavgpdrilfGsDyPhptleaepea 262
                   +H++     + ++++al+++   a   n+ vk+sgl  +  +      ++d p+      +++  e+ gp r+++GsD P +    ++ +
    KIR61428.1 164 NHLALVpawPGGVADALARVldpAAPANLIVKVSGLQYGaaD------PWDVPHraaldvVRAYYETWGPRRLVWGSDHPASGAAMTYRQ 247
                   *****99995666666665533345667*******8444333......3333333333559999**************998877666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2180.90
//
Query:       KIR61429.1  [L=523]
Description: malate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.4e-184  613.5   0.0   2.9e-184  613.2   0.0    1.0  1  Malate_synthase  Malate synthase
  ------ inclusion threshold ------
      0.017   15.0   0.1       0.04   13.8   0.1    1.5  1  DUF3248          Protein of unknown function (DUF3248)
      0.099   12.7   1.2       0.29   11.2   0.3    2.1  2  DUF5073          Domain of unknown function (DUF5073)


Domain annotation for each model (and alignments):
>> Malate_synthase  Malate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  613.2   0.0  4.9e-188  2.9e-184       9     525 ..      14     523 .]      10     523 .] 0.98

  Alignments for each domain:
  == domain 1  score: 613.2 bits;  conditional E-value: 4.9e-188
                      HHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHSHHHCCTCCCH-TSS---S-EECCCCE-TCCCCCCC-CCHCCCCCCCSS CS
  Malate_synthase   9 leaaeilteealefvaelvrdltprrrelLeeRdelqaeidkgelndflketkylreepewktatlhielqdrrveiiGkadrkmiinalnesa 102
                      + +ae+l+ +alefvael+r++ prrrelL++R+ + a         fl+et+ +r  ++w++a+  ++ +drrvei+G++drkm+inaln++a
       KIR61429.1  14 RARAEVLSPAALEFVAELHRRFDPRRRELLAARTARPAP------TGFLPETADVR-AGDWRVAAPRPDYADRRVEITGPTDRKMVINALNSGA 100
                      56789****************************987664......58*********.9************************************ PP

                      SEEEEESSTTS--HHHHHHCCHHCCCHCCTTT-EEEET-TSEEEEETTSESSSSEEEEE---TTTEEEEEECTTCEEEHHHHHHHHHHHHHHHH CS
  Malate_synthase 103 ittiaDfEDsvapnwenlvkGqlnledavrgrisfrkenkdksYklndglegrsllfvRnrGwhltekhilvdGeeisegilDfgliffhnake 196
                      + ++aDfED+ +p+w n v+G+lnl da++++i+ +   ++++Y+l    ++ ++l+vR+rGwhl +kh+lvdG ++ ++++Dfgl++fhna++
       KIR61429.1 101 RGFMADFEDANSPTWRNQVEGHLNLTDAIDRTITHDAS-DGRRYRLV---DSPATLLVRPRGWHLVDKHLLVDGVPVAGALMDFGLFAFHNARR 190
                      ******************************99988876.*******9...79****************************************** PP

                      CSCCTTSSEEEEE-S-SSHHHHHHHHHHHHHHHHHCTSSTTSCEEEEEE-SHHHHTTHHHHHHCTTTTEEEEEE-CHHHHHHHHHHTCCCCGCB CS
  Malate_synthase 197 lklsrgggpyivlPKmegpqEaalwnevFsraedllglprgtikatvliEtlraslnldeiiyelrdrvaglNcGrlDyifseiktlreagdmv 290
                      l l+rg++py++lPK+e++ Ea+lwn+vF  a+d+lg+prg+i+atvliEt +a+l++dei+ elr+++ glN+Gr+Dyifs+ikt+r+ + +v
       KIR61429.1 191 L-LERGSAPYLYLPKLEHHLEARLWNDVFVHAQDALGVPRGSIRATVLIETFPAALQMDEILFELREHSYGLNAGRWDYIFSMIKTFRDRPGFV 283
                      *.******************************************************************************************** PP

                      ...CGGGGCCSHHHHHHHHHHHHHHHHTT.CCCCCCCTCSEECCCEHHHCCCHHHHHHHCHHHHHCT-SEEEESSHHHHHHHHHHHHHCH.CHC CS
  Malate_synthase 291 LPdRkavtktapfikaYekllvktchkrgvhamgGlaakipikkdmeaneellekvredKlrevraGadgaWvahPtlatlaaevfeevd.vap 383
                      LPdR+avt+t+pf++aY++llv tch+rg+ amgG+aa ip+++d+ean++++++v +dK re+ +G+dg+WvahP+++++a+++f++v  ++p
       KIR61429.1 284 LPDRTAVTMTVPFMRAYTELLVATCHRRGAFAMGGMAALIPSRRDPEANARAVAAVDADKRREAGDGFDGTWVAHPDVVPVARAAFDAVLgERP 377
                      *****************************************************************************************999** PP

                      HHCCHHTTTHHHHHHHHCS..--BBHHHHHHHHHHHHHHHHHHHHHHCT-SSEEETTEEESHHHHHHHHHHHHHHHHTTSC-CCHSHCHHHHHH CS
  Malate_synthase 384 nQielakeevritaddLlt.kipeaeeteeglrnnvqvglqYvvaWlrgvGcvpiihLmEDaATaeiSrqqlaqWirhgvvlkeqgvkvslelm 476
                      nQi+ ++++v+ t +dLl+ ++  ++ te+glr nv+v  qY+  Wl+g G+  i +LmEDaATaei r+q++qWirhg++l + g+ v+++l+
       KIR61429.1 378 NQIDRRRDDVTTTPADLLDvASTPGSVTEAGLRGNVSVTFQYLSFWLTGRGAAGIDNLMEDAATAEIARSQVWQWIRHGAQLPD-GRVVTRDLV 470
                      *******************888889***********************************************************.7******** PP

                      HHHHHHHCCHHH.HHHH...CCTTHHHCHHHHHHHHHTTTCCC-CHHHHHCCH CS
  Malate_synthase 477 aklvdeenarle.elgk...edeayreaakllkkeataeefadfltlkaykel 525
                      a ++ ee+ar++ e+g+   ++++ ++a++++++ a a+e+ +fltl ay++l
       KIR61429.1 471 AGILAEETARIAaEVGDrvwRQGRPEDAREVFARVALADELPEFLTLVAYDRL 523
                      ************888889999*****************************987 PP

>> DUF3248  Protein of unknown function (DUF3248)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   6.7e-06      0.04       9      37 ..     489     517 ..     484     521 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.7e-06
                 EEEEEE-TTSSSEEEEEEEGGGHHHHHHS CS
     DUF3248   9 vWRiGkaeaedevvVRvGlAsatprFaeL 37 
                 vWR G+ e+  ev  Rv lA   p+F +L
  KIR61429.1 489 VWRQGRPEDAREVFARVALADELPEFLTL 517
                 9*************************887 PP

>> DUF5073  Domain of unknown function (DUF5073)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.64   3.8e+03      40      60 ..      50      69 ..      46      74 .. 0.73
   2 ?   11.2   0.3   4.9e-05      0.29      51      95 ..     445     491 ..     439     494 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.64
                SSSSS--S--SS--S----SS CS
     DUF5073 40 parrgllrseperiqigdwry 60
                pa  g+l  e   ++ gdwr 
  KIR61429.1 50 PAPTGFLP-ETADVRAGDWRV 69
                67777775.4556899***96 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.9e-05
                 S--S----SSHHHH..HGGGSSSTTTTHHHHHHSHHHHTT-TTHHHH CS
     DUF5073  51 eriqigdwryevts..dgrlsaahlvngiviaedvlaaeevgphiar 95 
                  r q+ +w    ++  dgr+ +  lv gi+  e + +a+evg  + r
  KIR61429.1 445 ARSQVWQWIRHGAQlpDGRVVTRDLVAGILAEETARIAAEVGDRVWR 491
                 5777777866555445**************************98866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3516.50
//
Query:       KIR61430.1  [L=287]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-58  194.9   0.3    1.4e-57  194.0   0.1    1.5  2  PGDH_C          Phosphogluconate dehydrogenase (decarboxylati
      5e-06   26.8   0.1    1.6e-05   25.1   0.0    1.8  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    1.7e-05   24.4   0.0    3.1e-05   23.6   0.0    1.4  1  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
    3.3e-05   23.8   1.5    3.3e-05   23.8   1.5    2.1  2  Rossmann-like   Rossmann-like domain
    3.7e-05   24.2   0.0    7.8e-05   23.2   0.0    1.6  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    9.4e-05   22.4   0.5     0.0056   16.7   0.5    2.3  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
    0.00074   18.9   0.1     0.0019   17.6   0.0    1.6  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    0.00078   19.1   0.3      0.004   16.8   0.3    2.0  1  ApbA            Ketopantoate reductase PanE/ApbA
  ------ inclusion threshold ------
      0.018   14.9   0.2      0.054   13.4   0.2    1.8  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.082   11.9   0.0       0.12   11.4   0.0    1.2  1  PDH             Prephenate dehydrogenase
        0.1   12.7   0.0       0.24   11.5   0.0    1.7  1  DapB_N          Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> PGDH_C  Phosphogluconate dehydrogenase (decarboxylating) C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.2   5.2e+03      88     110 ..      62      84 ..      50      93 .. 0.69
   2 !  194.0   0.1   8.5e-61   1.4e-57       2     155 .]     125     278 ..     124     278 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.2
                 C---HHHHHHHHHHHHHHHHHHH CS
      PGDH_C  88 rGvpeeaardfllGHlnielAvl 110
                   v   a+ d+llG ++ +l  l
  KIR61430.1  62 SDVVVLAVPDVLLGEISAQLVPL 84 
                 45555678888888888776655 PP

  == domain 2  score: 194.0 bits;  conditional E-value: 8.5e-61
                 ---SHHHHT-SSSSS.S-EEEEEEEEES-TTHHHHHHHHHHHHT-SEEEEEE--HHHHHHHTTHHHHCTHHHHHHHHHHHHHHHHHC.---HHHHHHHH CS
      PGDH_C   2 deetkearrDtfGGiaakqsivaallqgpeekyalgeevaktiyaPverayrvtveqlAllEPtlsEtvaatllevlrealdevvkr.Gvpeeaardfl 99 
                 +++t e+ +DtfGG+aa+q++vaal++g+++  a +e+v++ +y Pv ++++vtv+qlA+lEPtl+Etva+++  +lr+al+e+v++ Gvpe aa+++l
  KIR61430.1 125 ERTTGEEYADTFGGVAAAQDVVAALESGDDAVRARVEDVVRIMYGPVLDVHWVTVKQLAVLEPTLVETVACMISGLLRDALHETVHTvGVPEPAAKAML 223
                 57899********************************************************************************************** PP

                 HHHHHHHHHHHTTSS-------HCCCHHHHHHHHB-TTGGGGG-HHHHHHHHHHH. CS
      PGDH_C 100 lGHlnielAvlfkeipgkfsDaclkaielgkelllkedWkkvfdeeelkesirkil 155
                 +GH++++l + ++   + fs+acl+a+++g+e+++++dWk++fd++el+++i+++l
  KIR61430.1 224 FGHIQVALSNSLR-GSNPFSEACLIAMDYGRETIVRDDWKRIFDDAELDSVIARML 278
                 ************9.4456***********************************996 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0     1e-08   1.6e-05       2      87 ..       8      92 ..       7      99 .. 0.85
   2 ?   -1.6   0.0       1.7   2.7e+03     118     147 ..     137     165 ..     132     173 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1e-08
                   EEEE--.SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EEE CS
  NAD_binding_2  2 igfiGl.GvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdeviegllealkkgdili 87
                   i ++G  G+MG  +  nl+++g++v   + ++ +  ++ aeg ++ ++ + ++a+ dvv++ v++     e+  +l++ lk+g++++
     KIR61430.1  8 ITVVGAgGKMGLRISANLQRSGHTVRYCENHPPAQARVTAEGRELSDT-ATAAADSDVVVLAVPD-VLLGEISAQLVPLLKPGAVVL 92
                   667887369********************9999999999888766555.6688888********9.678899999*******99986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.7
                    SHHHHHHHT-EEEEEEE-HHHHHHHHHHHH CS
  NAD_binding_2 118 GGeegAekGtLsimvGGseeafervkpvle 147
                    GG++ A+    + + +G++++ +rv++v +
     KIR61430.1 137 GGVAAAQDVV-AALESGDDAVRARVEDVVR 165
                    6777666666.7777888888888777765 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.9e-08   3.1e-05       5      92 ..       6      92 ..       3     138 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.9e-08
                S-EEEES-S.HHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-HHHHHHHHHHHTGGG--TT-EEE CS
        IlvN  5 kkiaviGyG.sqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliPDelqkevyeeeiepnlkegkala 92
                  i+v+G G   G   + nl+ sg  v +  ++     ++ ++eg e  ++a a++++dvv++ +PD l  e+  +++ p lk g+++ 
  KIR61430.1  6 LVITVVGAGgKMGLRISANLQRSGHTVRYCENHPP-AQARVTAEGRELSDTATAAADSDVVVLAVPDVLLGEIS-AQLVPLLKPGAVVL 92
                56999**97256999**************987776.7888999*****************************98.88999999999875 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   1.5     2e-08   3.3e-05      11     104 ..       6      95 ..       2     112 .. 0.78
   2 ?   -1.1   0.1      0.99   1.6e+03      31      77 ..     141     185 ..     137     214 .. 0.59

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2e-08
  Rossmann-like  11 lsvGiisa.GrvGtalgaaleraghvvvgisaisaas.reraerrlPdvpvlevedvaaraellllavPdaelpglvkglaatgavraGtivahts 104
                    l + +++a G++G  ++a l+r+gh+v  +  +  a  r  ae    + ++ +    aa +++++lavPd  l ++ ++l     +++G +v    
     KIR61430.1   6 LVITVVGAgGKMGLRISANLQRSGHTVRYCENHPPAQaRVTAE----GRELSDTATAAADSDVVVLAVPDVLLGEISAQLVPL--LKPGAVVLTLD 95 
                    67888988469********************998764133444....4455555667899*****************999987..99999987654 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.99
  Rossmann-like  31 raghvvvgisaisaasreraer..rlPdvpvlevedvaaraellllavP 77 
                     a+ vv ++ +  +a r r e   r+   pvl+v+ v+ +     lav 
     KIR61430.1 141 AAQDVVAALESGDDAVRARVEDvvRIMYGPVLDVHWVTVKQ----LAVL 185
                    56667777777777777776642245555666665554443....3333 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   4.8e-08   7.8e-05       2      87 ..       8      86 ..       7      96 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.8e-08
                   EEEE.TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHT CS
  F420_oxidored  2 igii.GaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlselakdalk 87
                   i ++ ++G+mg  +  +l+++g   h ++   +  p +a+ +ae  +     +d+++aa+++dvvvlav+   + e+ ++l + +lk
     KIR61430.1  8 ITVVgAGGKMGLRISANLQRSG---HTVRYCENHPPAQARVTAEGRE----LSDTATAAADSDVVVLAVPDVLLGEISAQL-VPLLK 86
                   66774578**************...****777777777777776643....3368899999*********98888888888.44444 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.5   3.5e-06    0.0056      60     101 ..      52      93 ..       7      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.5e-06
                     ES-HHHHHTT--EEEE---HHHHHHHHHHHCCC--TT-EEEE CS
  NAD_Gly3P_dh_N  60 ttdlaealkgadiivlvvPsqalrevlkklkgllkkkailvs 101
                      +d a+a++++d++vl+vP   l e+ ++l +llk+ a+++ 
      KIR61430.1  52 LSDTATAAADSDVVVLAVPDVLLGEISAQLVPLLKPGAVVLT 93 
                     5799*******************************9998875 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.1e-06    0.0019      38     123 ..       7      91 ..       2      94 .. 0.85
   2 ?   -2.5   0.1       1.7   2.7e+03     129     145 ..     137     153 ..     137     160 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
                   EEEEES-.SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEE CS
  2-Hacid_dh_C  38 tvGiiGl.GrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpltpetrhlinaeelakmkkgail 123
                    + ++G+ G++G ++   l+  g  v + + ++ +++++ ++g el +  ++ a+sD+v+l++p  +   + i+a+   ++k+ga++
    KIR61430.1   7 VITVVGAgGKMGLRISANLQRSGHTVRYCENHPPAQARVTAEGRELSDTATAAADSDVVVLAVP--DVLLGEISAQLVPLLKPGAVV 91 
                   6778888358************************99999999*********************9..556666777777777777765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.7
                   GGGB-HHHHHHHHHTTS CS
  2-Hacid_dh_C 129 GglvdeeaLleaLksgk 145
                   Gg+   +++++aL+sg 
    KIR61430.1 137 GGVAAAQDVVAALESGD 153
                   778889999****9997 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.3   2.5e-06     0.004       1     101 [.       8      94 ..       8      97 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.5e-06
                 EEEES-SH.HHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCEE CS
        ApbA   1 iailGaGa.iGsllaakLakagadvtlilrsr.rlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealeeikplldpntv 97 
                 i+++GaG+ +G  + a+L++ g++v  + + +   +++  +G +l++           +++a       + d+v+++v+   + e  +++ pll+p +v
  KIR61430.1   8 ITVVGAGGkMGLRISANLQRSGHTVRYCENHPpAQARVTAEGRELSDTA---------TAAA-------DSDVVVLAVPDVLLGEISAQLVPLLKPGAV 90 
                 899***876***********************55555888888777766.........3333.......469999999999999999999999999999 PP

                 EEEE CS
        ApbA  98 vlll 101
                 vl+l
  KIR61430.1  91 VLTL 94 
                 9876 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   3.3e-05     0.054       2      43 ..       8      50 ..       7      79 .. 0.83
   2 ?    0.1   0.0       0.4   6.5e+02      66      90 ..      48      73 ..      40      94 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.3e-05
                EEEE--.SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHH CS
     3HCDH_N  2 vaviGa.GtmGagiaavfasagleVvlvdiseealekalekie 43
                ++v+Ga G mG  i a + ++g++V+ ++ ++ a ++++++ +
  KIR61430.1  8 ITVVGAgGKMGLRISANLQRSGHTVRYCENHPPAQARVTAEGR 50
                89****789********************98877777666544 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.4
                CEEEES-HHHHH.C-SEEEE-S-SSH CS
     3HCDH_N 66 risfttdleeav.dadlviEavvEnl 90
                + +  +d+++a+ d d+v+ av++ l
  KIR61430.1 48 EGRELSDTATAAaDSDVVVLAVPDVL 73
                4454455555555******9999865 PP

>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.3e-05      0.12       4      76 ..      24      92 ..      21     101 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.3e-05
                HHHHTT--SEEEEE-SSHHHHHHHHHTTSSSEEES-GGGGCCGSEEEE-S-GGGHHHHHHHHHHHS-TT-EEE CS
         PDH  4 alrrkgfkvtvigydideekaeaalelglvdeatddieavkeadivvlavPvevilevlkelaphlkedalit 76
                 l+r+g +v+       +++++ a+ ++l d+at     + + d+vvlavP   + e+ ++l p lk++a++ 
  KIR61430.1 24 NLQRSGHTVRYCENHPPAQARVTAEGRELSDTATA----AADSDVVVLAVPDVLLGEISAQLVPLLKPGAVVL 92
                68888866766666677777888888888888887....799*************************999875 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00014      0.24       3      36 ..       8      40 ..       6      86 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
                EEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTC CS
      DapB_N  3 vavvGasGrmGkevvkaveeaedlelvaavdrke 36
                ++vvGa G+mG ++   +++ +++++    ++++
  KIR61430.1  8 ITVVGAGGKMGLRISANLQR-SGHTVRYCENHPP 40
                89************999988.5555544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2063.30
//
Query:       KIR61431.1  [L=582]
Description: dihydroxyacetone kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.3e-102  340.9   0.2   7.8e-102  340.3   0.2    1.3  1  Dak1      Dak1 domain
    4.4e-42  143.9  15.4    7.8e-42  143.1  15.4    1.4  1  Dak2      DAK2 domain


Domain annotation for each model (and alignments):
>> Dak1  Dak1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.3   0.2  8.7e-106  7.8e-102       2     310 ..      18     329 ..      17     330 .. 0.97

  Alignments for each domain:
  == domain 1  score: 340.3 bits;  conditional E-value: 8.7e-106
                 HHHHH-TT.EEEETTTTEEEETT-S-TTS-EEEEEEEESSTTTTGGGBSBTSBSEEEEEEETS---HHHHHHHHHHH--SS-EEEEEESSHHHHHHHHH CS
        Dak1   2 Glvaanpe.lklleeekvvvrkkekkkgkValisgGGSGHePahagfVGkgmldaavaGevFaSPsakqilaaikavdsgkGvllivkNYtGDvlnfgl 99 
                 G++aa+p  ++++++   vvr+ ++ +g+Va+++gGGSGH+Pa+ag VG+g++++a++G+vFaSPsa+q+ ++++a+++g G+ll ++NY+GDvlnf  
  KIR61431.1  18 GFAAAHPGlVRRVSG--GVVRAAAPAPGRVAVVVGGGSGHYPAFAGLVGDGLAHGAAVGNVFASPSARQVRSVARAASGGGGILLAYGNYAGDVLNFTA 114
                 99******6666655..788989999************************************************************************* PP

                 HHHHHHHTT--EEEEEE--B-SSSSSTTCSSSB--THHHHHHHHHHHHHHHT--HHHHHHHHHHHHTTEEEEEEEEE--B-TTTSSBSS---TTEEEET CS
        Dak1 100 AaekakaegikvetvvvdDDvavedseekagrRGvagtvlveKiaGaaAeegasLeevaelaekvaenlrsigvalsactvpgagkpsfelaedeielG 198
                 A  +++aeg++++ v v+DD a+++ e++++rRG+ag ++v+K+a+aaA++g +L+ev+++a+ +++++rs+gval+ ct+pga+ p f ++ +++ +G
  KIR61431.1 115 ARVHLEAEGVDCRAVAVTDDLASAPAEQADRRRGIAGGLVVFKVAAAAADRGLDLDEVERIARLANARTRSFGVALTGCTLPGAAAPLFAVPGGRMAVG 213
                 *************************************************************************************************** PP

                 E-TTS---SEEEE---HHHHHHHHHHHHHH.........TT-EEEEEEEE-BSS-HHHHHHHHHHHHHHHHHTT-EEEEEEEESSS--TTBEEEEEEEE CS
        Dak1 199 lGiHgEpGvervklksadelveelleklledke....lkkgdevvllvNglGgtsllelyivarevaelleekgikvvrvlvGeyvTsldmaGfsitll 293
                 lGiHgEpG+++++  sad l+e l++++l++ +    + +g++ ++l+NglG+++++el++v+r+vaell+++g++vv   vGe+vTs++maG+s+t++
  KIR61431.1 214 LGIHGEPGIDERDRPSADGLAELLVDTVLAELPagidAPAGQRAAVLLNGLGSVKYEELFVVYRRVAELLAAAGVQVVAPAVGELVTSFEMAGVSLTVC 312
                 *****************************96666666777*********************************************************** PP

                 EE-HHHHHHHHS-EESS CS
        Dak1 294 klddellelldapvetp 310
                 +l+del  l+ ap+++p
  KIR61431.1 313 WLTDELVPLWCAPADAP 329
                 *************9986 PP

>> Dak2  DAK2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.1  15.4   8.7e-46   7.8e-42       2     173 ..     394     568 ..     393     569 .. 0.98

  Alignments for each domain:
  == domain 1  score: 143.1 bits;  conditional E-value: 8.7e-46
                 TS-S-HHHHHHHHHHHHHHHHHC-..--SSHHHHHHHHHHHHHHH--STHHHHHHHHHHHHHHHC.....TT---HHHHHHHHHHHHHHHH---TTSSS CS
        Dak2   2 vGDGDtGtnmargaeavlkaleel..eeaslaevlkalakallsgagGtsGvlysqflralakalkekeeldaedlaaalkaaleaiqavgkarpgdkT 98 
                 +GDGD+G++m+rg++a+++a+ ++  + a ++++l+++++a++++ gGtsG+l++ +lr++a al + +e +a+ +  a+++al+ +++vg+a +gdkT
  KIR61431.1 394 AGDGDHGIGMSRGVNAAVSAAVAAvaAGAGVGTALTRAGDAWADAGGGTSGALWGVALRGAAVALGDDREPTAARVTGAVSRALADVTRVGGAAVGDKT 492
                 7******************9999999************************************************************************* PP

                 THHHHHHHHHHHHT............T---HHHHHHHHHHCCS---SSGGGGGGGGGTTS--HHHHHHHHHHHHHH CS
        Dak2  99 mlDvlrpavealekakd.gedlkealekaakaaekgaeaTkellaklgrAsylgerslgvvDpGAvglalileala 173
                 ++D+ +p++ +l++  + g+ +++a+++aa+ a+ +a+aT++l++++grA+ l+ rs+g +D+GAv+lalil a+a
  KIR61431.1 493 LVDAFAPFAATLADRVQaGQPVAAAWREAAAVADVAARATADLVPRVGRARPLAHRSVGAPDAGAVSLALILAAVA 568
                 **************6666******************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4224.53
//
Query:       KIR61432.1  [L=157]
Description: ribose 5-phosphate isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-41  139.8   0.1    6.1e-41  139.7   0.1    1.0  1  LacAB_rpiB      Ribose/Galactose Isomerase
     0.0023   18.0   0.2     0.0032   17.5   0.2    1.3  1  Gly_rich_SFCGS  Glycine-rich SFCGS


Domain annotation for each model (and alignments):
>> LacAB_rpiB  Ribose/Galactose Isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   0.1   6.8e-45   6.1e-41       1     132 [.       8     141 ..       8     148 .. 0.94

  Alignments for each domain:
  == domain 1  score: 139.7 bits;  conditional E-value: 6.8e-45
                 EEEEE-GCGHHHHHHHHHHH..HHTTTEEEEECESSSS---HHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHHHTT CS
  LacAB_rpiB   1 iaigsDhagfelkekikeyL..kekghevidvgteseesvdYpdfakkvaeavasgeadlgiliCgtGiGmsiaaNkvkgiraalchdeesAklarehn 97 
                 i++g+D+ag+++ke +k+ L  +e+  evidvg++++ ++ Yp +a+++ae va+g+ad+++l+CgtG G++iaaNkv gira+++hd++s+++a  +n
  KIR61432.1   8 IVVGADDAGYQYKEMLKADLrgHERVAEVIDVGVDADGHTAYPIVAIAAAEIVAAGRADRALLVCGTGLGVAIAANKVAGIRAVTAHDSYSVERAILSN 106
                 89******************7544578*********99************************************************************* PP

                 --SEEEEETTTS-HHHHHHHHHHHHHS---.HTHH CS
  LacAB_rpiB  98 nanvlalGarvigeelakeivkaFletefeeggrh 132
                 na+vl++G+rvig+ela+++++++l  +f++++ +
  KIR61432.1 107 NAQVLTFGQRVIGPELARRLAREWLGYDFDDSSPS 141
                 *****************************766655 PP

>> Gly_rich_SFCGS  Glycine-rich SFCGS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   3.5e-07    0.0032      15     111 ..      37     130 ..      23     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.5e-07
  Gly_rich_SFCGS  15 vakgveaaggkaivipglaadlklgdvmkkeeadlgisfcgsggagaltaqtkygykak..yglrsveegvtaikegkkvlgfgf.ldkeelgkr 106
                     +  gv+a g +a  i  +aa     +++   +ad  +  cg+g   a+ a++  g +a   ++  sve  +  + + ++vl fg  +   el +r
      KIR61432.1  37 IDVGVDADGHTAYPIVAIAA----AEIVAAGRADRALLVCGTGLGVAIAANKVAGIRAVtaHDSYSVERAI--LSNNAQVLTFGQrVIGPELARR 125
                     66799999999998888887....578999*************999****9999*9975115566666655..788999****972456799999 PP

  Gly_rich_SFCGS 107 lveay 111
                     l+ ++
      KIR61432.1 126 LAREW 130
                     98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1129.73
//
Query:       KIR61433.1  [L=265]
Description: sugar phosphate isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-18   65.7   0.0    5.6e-18   65.2   0.0    1.3  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   3.1e-22   5.6e-18       2     194 ..      28     196 ..      27     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 3.1e-22
                   HHHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCTT CS
  AP_endonuc_2   2 aaaaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllvlhpGtagagp 98 
                   ++ aeaG++ ++++ +++   +  sd el++lr+++ +lg+r   l+l tr  +               +l r ++la +L++ ++ ++    +a +
    KIR61433.1  28 ERTAEAGATVFQVCDYPPIEEA--SDGELERLRRRASALGVR---LELGTRGVA-------G------PHLARYLDLAGRLDVAFVRTMLN--TAAH 104
                   6789*****************9..79****************...444444444.......3......489******************77..6677 PP

                   TSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTCHHHHHHHHHHTTTTEEEEEEHHHHHHHTTTHHHHHHHHHGGEEEEEE.EESS.. CS
  AP_endonuc_2  99 kgseeeawerlaeslneladyaekegvklalEtlagsgvelgdeelarlldavdspnvgvclDtgHlliaeedvddalraladrikhvHikDakg.. 193
                   + + +ea+++la++l   a+     gv+++lEt     +    ++l+++++ vd+p++gvclD+++++++ e +++++++ a+++  +H+kD     
    KIR61433.1 105 RPTVAEAVALLAAALPGYAAR----GVTIGLETYEQVAT----DDLLAVVRGVDDPHLGVCLDPANCVARLELPATTVERTAPYVVNLHVKDFAFtr 193
                   777777777777766665555....************99....*************************************************98844 PP

                   ..T CS
  AP_endonuc_2 194 ..d 194
                      
    KIR61433.1 194 apG 196
                   333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2130.86
//
Query:       KIR61434.1  [L=106]
Description: hypothetical protein TK50_27805 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      150  (0.00836633); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 764.66
//
Query:       KIR61435.1  [L=209]
Description: SAM-dependent methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-06   28.9   0.1    2.1e-06   28.3   0.1    1.3  1  Methyltransf_25  Methyltransferase domain
     0.0016   17.6   0.0     0.0018   17.4   0.0    1.1  1  RrnaAD           Ribosomal RNA adenine dimethylase
     0.0053   17.5   0.0      0.008   16.9   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
      0.009   16.6   0.1      0.015   16.0   0.1    1.4  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
       0.09   12.9   0.0        0.1   12.7   0.0    1.3  1  FtsJ             FtsJ-like methyltransferase
       0.18   11.4   0.1        5.9    6.5   0.0    2.0  2  GCD14            tRNA methyltransferase complex GCD14 subunit


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   7.1e-10   2.1e-06       1      97 []      46     144 ..      46     144 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 7.1e-10
                      EEEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS.....SSTTTEEEEEEEST.GGGSSHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraeeeglnvefvqgdaedlp.....fedgsfDlvvssga.lhhlsdedlekalk 87 
                      v++lG GtG +t+a+++rl g+++ ++v+++e++    ++r+    +++++ ++da+dl        +g+ D++vs g  +  +   +++++l+
       KIR61435.1  46 VVELGPGTGAFTAAIQRRLaGRGRHLAVEVNERFAGLLAARH----PRLDVAVADARDLGdvlaqRGHGRADVIVS-GLpWAAFAGGQQDELLH 134
                      89*****************889*****************999....9***********96443335888*******.777999999******** PP

                      HHHHHEEEEE CS
  Methyltransf_25  88 eiarvLkpgG 97 
                       + ++L+p+G
       KIR61435.1 135 AVTDALTPDG 144
                      ********99 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   6.2e-07    0.0018      33      86 ..      45      98 ..       2     104 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.2e-07
                EEEEES-TTTCCHHHHHCC-...SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CC CS
      RrnaAD 33 tvleigpGkGilTeeLakra...kqvvvlElderLakllqkklskdeklkvvhqDfl 86
                 v+e+gpG+G++T+ +  r+     + ++E  er+a ll +    +++l v  +D+ 
  KIR61435.1 45 LVVELGPGTGAFTAAIQRRLagrGRHLAVEVNERFAGLLAA---RHPRLDVAVADAR 98
                59**************999999889***************9...5899998877765 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.7e-06     0.008       1      98 [.      47     145 ..      47     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.7e-06
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldnirk 91 
                      +e+G GtG++++a+ ++l  + + ++v++++++    ++++ + +   ++  +l   d+l + g +  D++v+     ++   + +e+l+ + +
       KIR61435.1  47 VELGPGTGAFTAAIQRRLaGRGRHLAVEVNERFAGLLAARHPRLDVAVADARDLG--DVLAQRGHGRADVIVSGLPWAAFagGQQDELLHAVTD 138
                      59****************8899999*********666666666665444444444..444444558*******9888888899999******** PP

  Methyltransf_12  92 lLkpgGr 98 
                      +L+p+G 
       KIR61435.1 139 ALTPDGA 145
                      *****96 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   4.9e-06     0.015       2      94 ..      48     146 ..      47     148 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.9e-06
                      EET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC....T.SS-TT-EEEEEEES-CCC-..CCHHHHHHHHH CS
  Methyltransf_11   2 dvGcGtGrlaealakrg...arvvgvDlskemlklakekaseeglkvefvvadaek....l.pfednsfDlvvssevlhhv..edpekalkeia 85 
                      ++G GtG++++a+++r    +r ++v++++++  l  ++ ++    +++ vada++    l +   +  D++vs   +  +   +++++l  + 
       KIR61435.1  48 ELGPGTGAFTAAIQRRLagrGRHLAVEVNERFAGLLAARHPR----LDVAVADARDlgdvLaQRGHGRADVIVSGLPWAAFagGQQDELLHAVT 137
                      89************766689*************888666555....6689*****9333332355579******99888886668999999999 PP

                      HHEEEEEEE CS
  Methyltransf_11  86 RvLkpgGll 94 
                        L p+G +
       KIR61435.1 138 DALTPDGAF 146
                      999999987 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.4e-05       0.1      25      93 ..      46     117 ..      12     174 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.4e-05
                 EEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS......HHHTTEEEECS-CCCSSHHHHHCHCHHHSSEEEEEE CS
        FtsJ  25 vvDlgaaPGgwsqvllqrlgakgkvvavDlqpm......aplpgvttiqgditdpetiekikealserkvdlvvs 93 
                 vv+lg ++G+++  + +rl  +g+ +av +++       a +p++ +  +d +d     + +    + ++d++vs
  KIR61435.1  46 VVELGPGTGAFTAAIQRRLAGRGRHLAVEVNERfagllaARHPRLDVAVADARDLGDVLAQRG---HGRADVIVS 117
                 9******************778********999888885555888888777777655554443...345666665 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.002       5.9      43      75 ..      45      77 ..      39      89 .. 0.90
   2 ?    2.9   0.0     0.024        71      52      87 ..     130     165 ..     121     180 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.002
       GCD14 43 vvvesGtGsgslshaiartvaPtGhlftfefhe 75
                 vve G G+g+++ ai r +a +G+  ++e  e
  KIR61435.1 45 LVVELGPGTGAFTAAIQRRLAGRGRHLAVEVNE 77
                59***********************99998765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.024
       GCD14  52 gslshaiartvaPtGhlftfefheqraekareefre 87 
                   l ha++ +++P G + tf +  +r   a   +r+
  KIR61435.1 130 DELLHAVTDALTPDGAFTTFGYTIARWAPAARRLRR 165
                 56889******************9999988777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1622.98
//
Query:       KIR61436.1  [L=334]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-49  168.4   0.4    2.8e-49  167.9   0.4    1.2  1  Abhydrolase_3  alpha/beta hydrolase fold
    4.4e-09   35.8   0.1    8.3e-09   34.8   0.1    1.4  1  COesterase     Carboxylesterase family
  ------ inclusion threshold ------
      0.044   13.2   0.0       0.12   11.8   0.0    1.7  2  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.9   0.4   4.7e-53   2.8e-49       2     209 ..      85     291 ..      84     293 .. 0.92

  Alignments for each domain:
  == domain 1  score: 167.9 bits;  conditional E-value: 4.7e-53
                    EEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT- CS
  Abhydrolase_3   2 vyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardege 97 
                     ++HGGG v+g+  ++ ++  e  ++ gavvvsvdYrlAPe+     v+d+++ l w+ae+a elg+dp  iv+aG SaGG l+a +al ard+g+
     KIR61436.1  85 YWMHGGGMVMGDRFSQLDIPLEWLDRFGAVVVSVDYRLAPEATGTSLVDDCYHGLLWVAEHADELGVDPGLIVVAGISAGGGLTAGIALLARDRGG 180
                    689**********************************************************99********************************* PP

                    --EEEEEEESE-SSTSSTTSHHHHHCHHT.TTSSSSCHHHHHHHHHHHSS..GGGGGSTTTSGGGCS-SST---EEEEEETT-TTHHHHHHHHHHH CS
  Abhydrolase_3  98 pkvagqvliyPvtdlertesesikkaeel.adgplltraaldlfwrlylp..eadrddplaspllaedlsglpptlvvvaefDplrdegeayaerl 190
                    p++a+qvli+P++d ++ +++s+    ++  +  ++tr++ +  wr +l+   +d+    +sp  a+dlsglp ++v  ++ +++rde+ aya r+
     KIR61436.1 181 PPLAAQVLICPMLDHHNDTTSSR----QYaGEPGVWTREMNEFGWRSVLGdlADDAVPGHVSPATADDLSGLPDAYVDAGTAEVFRDEAVAYATRI 272
                    *************9944444555....342565679*************6555555555*****9999**************************** PP

                    HHTT--EEEEEETTEETTG CS
  Abhydrolase_3 191 raagvevelieyegmvHgf 209
                     a g ++el+++ g +Hgf
     KIR61436.1 273 WADGGQAELHVWAGGFHGF 291
                    ******************9 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.1   1.4e-12   8.3e-09      90     199 ..      67     168 ..      65     180 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.4e-12
                 EEEEEESSSSSTTSSEEEEEEE--STTTS-BG.CG..S-THHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEE CS
  COesterase  90 LnvytPkekkeakkklPVlVwihGggfqtgsa.se..ydgsaLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWVkenIasFGGdpe 185
                 L+v+ P+  +e +   P + w+hGgg ++g+  s+  ++  + +++++ +vV++ YRl +         ea+G   + D    L WV e+  + G dp 
  KIR61436.1  67 LSVFRPAG-PEHTAPAPCVYWMHGGGMVMGDRfSQldIP-LEWLDRFGAVVVSVDYRLAP---------EATGTSLVDDCYHGLLWVAEHADELGVDPG 154
                 89****98.6777777**************996555444.5556666***********87.........6667677789******************** PP

                 EEEEEEETHHHHHH CS
  COesterase 186 rvtlfGesAGaasv 199
                  + ++G sAG+ + 
  KIR61436.1 155 LIVVAGISAGGGLT 168
                 **********9765 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     2e-05      0.12      40      87 ..     127     178 ..     105     236 .. 0.70
   2 ?   -1.9   0.0      0.32   1.9e+03     160     209 ..     263     316 ..     258     318 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2e-05
                   GGHHHHHHHHHHHHHHHHTT...S--GGGEEEEEETHHHHHHHHHHH.H-GG CS
  Peptidase_S9  40 lgqnefdDfiaaaealakeg...yvdserlaitGgSyGGyltgaaln.qrpd 87 
                   +g+  +dD+  ++ ++a++     vd+  +++ G S+GG lt+ ++   r++
    KIR61436.1 127 TGTSLVDDCYHGLLWVAEHAdelGVDPGLIVVAGISAGGGLTAGIALlARDR 178
                   6777788888877777555443489************998887666524443 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.32
                   HHHHHHHHHHH--S-SEEEEEETTS-S..STTSSHHHH..HHHHHHHHHHHHHC CS
  Peptidase_S9 160 aealklvaaLqkkgknvlllifpdegH..gvgkprakv..eelarllaFlkeal 209
                    ea+ ++++    g +++l++  +  H   +  p+a++  +  +  +++l+++l
    KIR61436.1 263 DEAVAYATRIWADGGQAELHVWAGGFHgfDALYPQARIsaQARRARTDWLARVL 316
                   567777777778888889999999999432345666664344555678888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2597.29
//
Query:       KIR61437.1  [L=101]
Description: antibiotic biosynthesis monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-05   22.8   0.0     0.0001   22.3   0.0    1.2  1  ABM       Antibiotic biosynthesis monooxygenase


Domain annotation for each model (and alignments):
>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   5.7e-09    0.0001       5      76 ..       8      76 ..       5      78 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 5.7e-09
                EEEEEESTTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEETSTTEEEEEEEESSHHHHHHHHTSHHHHHHH CS
         ABM  5 iaeirvkpgqaeafldafaeavesllaeepGclgyellrstedpdevvvieeWeseaaleahlksphfkaah 76
                +a+++++pg+ ++++d + +   ++l + + c  + + rs ++ d v v+e W +e+a+ ++ ++ + +a +
  KIR61437.1  8 HATMTAQPGKGDDLVDFLLAS--PSL-ANEDCVVFLIGRSATASDIVHVTEGWTTEEAHHRFFATAEAQALV 76
                689*************88774..464.8899**********************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 790.00
//
Query:       KIR61438.1  [L=186]
Description: hypothetical protein TK50_27825 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-11   44.7   0.0    1.5e-11   44.4   0.0    1.1  1  Ferritin  Ferritin-like domain


Domain annotation for each model (and alignments):
>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   8.1e-16   1.5e-11       3     135 ..      34     169 ..      32     175 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 8.1e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS....SHHHHHH...C-SSSS....CSSHHHHHHHHHHHHHH CS
    Ferritin   3 aLneqladeltaayqylamawyvkgpgleglaeffdeqaeeerehadklaerilalGgtpvltraelee...ieapke....fgsveevleaalehekk 94 
                 +Ln +la   ++++qy ++a  v+ p  + lae+++  a+  r+ a  +a ri++lG + + ++++l+    +         +g+v  ++ ++l   + 
  KIR61438.1  34 LLNVLLASLVVSSLQYEQHALGVRAPSARLLAELLFAGADRDRGDARLVATRIRQLGCVGDYDPQHLSVrsrV---AFrafpDGDVVGIVTQNLVGARI 129
                 79********************************************************999999988885551...44455567*************** PP

                 HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin  95 vteslrelielaeeegDpatadfledfleeqeeheweleal 135
                 ++++l+e+++   +  Dp+t+ +le +le  e +++el+a+
  KIR61438.1 130 LVQTLQEAVRWIGDD-DPTTRRLLERLLEAKETQADELSAQ 169
                 **************7.**********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.53
# Mc/sec: 1064.28
//
Query:       KIR61439.1  [L=921]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-16   61.0   0.4    1.8e-16   61.0   0.4    3.2  3  AAA_16        AAA ATPase domain
    3.5e-16   58.5   0.0    6.3e-16   57.7   0.0    1.4  1  GerE          Bacterial regulatory proteins, luxR family
    8.5e-07   29.4   7.5     0.0002   21.8   0.0    4.9  4  TPR_19        Tetratricopeptide repeat
    2.1e-06   27.3   1.3      0.013   15.1   0.0    4.1  4  Sigma70_r4_2  Sigma-70, region 4
     0.0011   18.7   0.0     0.0052   16.6   0.0    2.2  1  HTH_23        Homeodomain-like domain
     0.0025   18.1   0.0      0.014   15.7   0.0    2.2  1  AAA_22        AAA domain
     0.0062   17.1  44.9     0.0066   17.0   0.7    8.5  6  TPR_4         Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.032   14.0   0.1      0.092   12.5   0.1    1.7  1  AAA_29        P-loop containing region of AAA domain
       0.04   14.1   0.0       0.18   12.0   0.0    2.2  1  HTH_28        Helix-turn-helix domain
      0.047   13.3   0.0       0.13   11.8   0.0    1.7  1  HTH_24        Winged helix-turn-helix DNA-binding
      0.077   12.8   0.0       0.22   11.3   0.0    1.7  1  HTH_38        Helix-turn-helix domain
       0.32   11.6   7.0        0.7   10.6   0.1    3.6  2  HTH_32        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.4   1.2e-19   1.8e-16       1     162 [.       5     156 ..       5     165 .. 0.77
   2 ?   -1.5   1.5       1.9   2.8e+03     137     155 ..     243     261 ..     173     400 .. 0.62
   3 ?   -2.1   0.1         3   4.4e+03      77     106 ..     812     840 ..     728     881 .. 0.63

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 1.2e-19
      AAA_16   1 rlvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawre 99 
                 +l+GR ++l+qL++ l+ vr+g+ +  l+ Ge+GvGKs+l++++ + + +dg+ +lr+   ++e++++ys l q+l    +  + ld+    +++  re
  KIR61439.1   5 ELFGRHDDLAQLAEFLDGVRRGG-GTRLICGEPGVGKSALMTAATELALADGMRALRASGSEFEADVSYSGLHQLLLP--V-HAALDR----LPPGPRE 95 
                 59********************9.68889***********************************************44..4.444455....3344444 PP

      AAA_16 100 kleealaavpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrll 162
                 +l  al+ +   +++     +++l  l+  l+  + p+vlv+Dd++w+d as+ +l + +r+l
  KIR61439.1  96 ALSVALGFGVGTPPDVLLVCNAALL-LVTELTA-DGPVVLVVDDVHWIDRASAVVLGFVARRL 156
                 4555555222233333344444444.4434444.678****************9999998875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.9
      AAA_16 137 lvlvlDdlqwadeaslqll 155
                 +v + D lq + +a l+ l
  KIR61439.1 243 VVPLSDRLQAIFAARLTGL 261
                 4444444443333333222 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3
      AAA_16  77 areellrqlldeaesaeleawrekleeala 106
                 ar++ll++ +   ++ ++e+w ++ e++l+
  KIR61439.1 812 ARRHLLAARDGF-AAMAAEPWLARVEGELR 840
                 233444444444.33356666666666665 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   4.2e-19   6.3e-16       2      53 ..     856     907 ..     855     910 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 4.2e-19
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvel 53 
                  L+ +E+++ +l a+G++nk+IAe+l++S +TV +h+ +i+ KL+v+sr++l
  KIR61439.1 856 ALTAQELQIAELAASGMTNKQIAERLFLSHRTVGAHLYRIFPKLGVTSRAAL 907
                 69***********************************************987 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.3     0.031        47       5      58 ..     382     439 ..     379     445 .. 0.75
   2 ?   -0.2   0.0      0.96   1.4e+03      38      49 ..     610     621 ..     600     625 .. 0.86
   3 ?    2.4   0.2      0.15   2.2e+02      27      54 ..     639     666 ..     636     680 .. 0.81
   4 !   21.8   0.0   1.3e-07    0.0002       1      66 [.     687     760 ..     687     761 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.031
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeall....algqldeAealLdalpeedpdd 58 
                 gd  +A+a+l +a + +  +a    +LA+a +    a+g +d+A+  L ++ +++pd+
  KIR61439.1 382 GDGFAAVAALVRAAELSTTSAGRGRRLAQAAYigaeASGTIDDAKTWLTDARRAAPDS 439
                 55557777777777777777777777777765455589******************94 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.96
      TPR_19  38 lgqldeAealLd 49 
                 +g++deAe+l +
  KIR61439.1 610 TGRWDEAEELAA 621
                 79******9866 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.15
      TPR_19  27 arllLAeallalgqldeAealLdalpee 54 
                  r++ A++    g++deA al d++  +
  KIR61439.1 639 FRYNRAILAAGRGRFDEAYALADEITHW 666
                 67888999999999***99999998765 PP

  == domain 4  score: 21.8 bits;  conditional E-value: 1.3e-07
      TPR_19   1 llaegdyaeAlalleq......alqedpknaearllLAeallalgqldeAealLdalpeedpd..daryasLlA 66 
                 +l +gdy++A  + ++      + ++ p+  ++  +L+ea + +g+++eA+a ++a  ++d    ++r+a L+A
  KIR61439.1 687 ALGQGDYDAAFGHAAAmcppgvLASHVPHCTWVMFDLVEAAVRTGRTAEARAHVQAMRDADVAglSPRMALLQA 760
                 689*************7777754599***********************************9998899999998 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.052        77       4      19 ..      82      97 ..      79     103 .. 0.89
   2 ?   -2.3   0.1       2.4   3.6e+03       4      17 ..     197     210 ..     195     212 .. 0.85
   3 ?    5.0   0.0     0.013        20       7      26 ..     257     276 ..     252     278 .. 0.87
   4 !   15.1   0.0   8.9e-06     0.013      21      50 ..     867     895 ..     854     899 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.052
                  HHHHHTTS-HHHHHHH CS
  Sigma70_r4_2  4 lrealaeLperqreif 19
                  +++al++Lp+  re++
    KIR61439.1 82 VHAALDRLPPGPREAL 97
                  789***********98 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.4
                   HHHHHTTS-HHHHH CS
  Sigma70_r4_2   4 lrealaeLperqre 17 
                   ++++  +Lp r r+
    KIR61439.1 197 VDACHPQLPARVRR 210
                   789999****9995 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.013
                   HHTTS-HHHHHHHHHHHTS- CS
  Sigma70_r4_2   7 alaeLperqreifllryleg 26 
                    l  Lpe  r+++ll  +eg
    KIR61439.1 257 RLTGLPEATRRVLLLATFEG 276
                   6778************9998 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 8.9e-06
                   HHHTS---HHHHHHHHT--HHHHHHHHHHH CS
  Sigma70_r4_2  21 lryleglsykEIAellgisegtVksrlsRA 50 
                   l +  g++ k+IAe+l +s +tV  +l+R 
    KIR61439.1 867 L-AASGMTNKQIAERLFLSHRTVGAHLYRI 895
                   5.578***********************95 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.5e-06    0.0052       8      34 ..     862     888 ..     857     896 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.5e-06
      HTH_23   8 lrillllaeGlsvreIAreLgvsrrTv 34 
                 l+i+ l+a G++ ++IA++L  s+rTv
  KIR61439.1 862 LQIAELAASGMTNKQIAERLFLSHRTV 888
                 899***********************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.3e-06     0.014       5     111 ..      27     151 ..      23     164 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.3e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee...erpevvfvtlpsst.sskdllrellralglelka...............erlsseellealeq 84 
                  g  +++Ge+G+GK+ l+   +e + ++         r++  ++++ +s  ++ +ll  +  al++   +               +++ +  + +al  
  KIR61439.1  27 GGTRLICGEPGVGKSALMTAATELALAD----GmraLRASGSEFEADVSYsGLHQLLLPVHAALDRLPPGprealsvalgfgvgtPPDVLLVCNAALLL 121
                 56668******************98544....3333333334555555555577777777788877776688888888888887666666666644433 PP

      AAA_22  85 alrarav.ielliiDEaqhlr..seealee 111
                   + +a+ +++l++D+++ ++  s+ +l +
  KIR61439.1 122 VTELTADgPVVLVVDDVHWIDraSAVVLGF 151
                 333333357999999999987655665555 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       3.5   5.2e+03      12      24 ..     539     551 ..     539     551 .. 0.86
   2 ?   -2.5   0.0       8.5   1.3e+04      11      20 ..     570     579 ..     568     579 .. 0.85
   3 !    6.8   0.9    0.0083        12       3      26 .]     599     622 ..     597     622 .. 0.84
   4 !   17.0   0.7   4.4e-06    0.0066       2      26 .]     638     662 ..     637     662 .. 0.93
   5 ?    4.6   4.1     0.043        65       3      20 ..     679     696 ..     671     697 .. 0.94
   6 !   13.6   0.7   5.3e-05     0.079       2      25 ..     718     741 ..     717     742 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.5
       TPR_4  12 lalGdldeArall 24 
                 +alG+ d+ +++l
  KIR61439.1 539 AALGRIDAVLRTL 551
                 699****999886 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 8.5
       TPR_4  11 llalGdldeA 20 
                 l +lGd+ eA
  KIR61439.1 570 LDRLGDSREA 579
                 6699***998 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0083
       TPR_4   3 allaLArallalGdldeAraller 26 
                 al  L+   +++G++deA++l+++
  KIR61439.1 599 ALMHLCLDDFLTGRWDEAEELAAE 622
                 67778888899**********975 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 4.4e-06
       TPR_4   2 rallaLArallalGdldeAraller 26 
                 ++++++A +++ +G++deA al+++
  KIR61439.1 638 YFRYNRAILAAGRGRFDEAYALADE 662
                 579*******************986 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.043
       TPR_4   3 allaLArallalGdldeA 20 
                 a++ +A a+l +Gd+d+A
  KIR61439.1 679 AQHPRALAALGQGDYDAA 696
                 7889************99 PP

  == domain 6  score: 13.6 bits;  conditional E-value: 5.3e-05
       TPR_4   2 rallaLArallalGdldeAralle 25 
                 ++  +L +a+ ++G+ +eAra+++
  KIR61439.1 718 WVMFDLVEAAVRTGRTAEARAHVQ 741
                 78899****************986 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   6.2e-05     0.092      23      50 ..      27      55 ..      21      64 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.2e-05
      AAA_29 23 g.atlltGpsGsGKSTllDAiqalLvpak 50
                g + l+ G+ G+GKS+l+ A + l +++ 
  KIR61439.1 27 GgTRLICGEPGVGKSALMTAATELALADG 55
                4589****************999887765 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00012      0.18       3      29 ..     862     888 ..     862     909 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
      HTH_28   3 leiikllaaGhsvreaArelgisrrtv 29 
                 l+i +l+a+G++ +++A++l +s+rtv
  KIR61439.1 862 LQIAELAASGMTNKQIAERLFLSHRTV 888
                 6899**********************9 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.9e-05      0.13      16      38 ..     870     892 ..     864     892 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.9e-05
      HTH_24  16 prisqreLAerlglSpstvnrrl 38 
                 ++++++++Aerl lS  tv ++l
  KIR61439.1 870 SGMTNKQIAERLFLSHRTVGAHL 892
                 79****************98875 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00015      0.22      12      37 ..     863     888 ..     856     893 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
      HTH_38  12 eIerllaeGlslreIArrLgrspsTI 37 
                 +I+ l a G+++++IA rL  s+ T+
  KIR61439.1 863 QIAELAASGMTNKQIAERLFLSHRTV 888
                 8******************9999997 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1      0.08   1.2e+02      17      45 ..     196     220 ..     186     250 .. 0.70
   2 ?   10.6   0.1   0.00047       0.7       5      72 ..     831     891 ..     828     892 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.08
      HTH_32  17 Lkdrprrgrprklsdevrariiallreep 45 
                 L d+      ++l+++vr+r+++l++ +p
  KIR61439.1 196 LVDA----CHPQLPARVRRRLLDLAQGNP 220
                 4444....4457*************5466 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00047
      HTH_32   5 wlkRyneeGle.gLkdrprrgrpr.klsdevrariiallreeprWsprqlaarlaeregvkvShstvyri 72 
                 wl+R + e ++ g+++ pr+ r   +   +++ +i +l+     ++ +q+a+rl       +Sh+tv+  
  KIR61439.1 831 WLARVEGELRAcGYRPVPRQ-RGGlTALTAQELQIAELA-AS-GMTNKQIAERL------FLSHRTVGAH 891
                 99997655577799988666.4445567788899*****.55.8**********......7******865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.48
# Mc/sec: 5734.16
//
Query:       KIR61440.1  [L=302]
Description: AraC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-47  159.3   0.0    6.9e-47  158.8   0.0    1.2  1  AraC_N         AraC-type transcriptional regulator N-terminus
    1.5e-18   66.8   0.3    3.6e-18   65.6   0.3    1.7  1  HTH_18         Helix-turn-helix domain
    4.3e-18   64.9   0.1    4.5e-12   45.7   0.0    2.4  2  HTH_AraC       Bacterial regulatory helix-turn-helix proteins
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.024   14.5   0.0    1.6  1  AraC_binding   AraC-like ligand binding domain
       0.01   15.6   0.4       0.14   11.9   0.0    2.7  3  TetR_N         Bacterial regulatory proteins, tetR family
       0.15   11.8   0.0         10    5.9   0.0    2.3  2  Ribosomal_S14  Ribosomal protein S14p/S29e


Domain annotation for each model (and alignments):
>> AraC_N  AraC-type transcriptional regulator N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.8   0.0   2.3e-50   6.9e-47       2     147 ..      22     174 ..      21     175 .. 0.94

  Alignments for each domain:
  == domain 1  score: 158.8 bits;  conditional E-value: 2.3e-50
      AraC_N   2 ipglslfrtsepaevalvvyepslcivlqGkKrvhlgdeafeydpgeylvvsvdlpveievveaspekPylglalaldpellaell..aeae....... 91 
                 i ++++fr+++p++++++ y  +l++v+qG+Kr  lgd+++ey++g+ylv+svdlpv++++ +aspe+P lg+ l+l+p+ +ae+l  a  +       
  KIR61440.1  22 IADVRIFRADRPNPPTPTTYGKVLALVAQGTKRFALGDRVYEYQAGDYLVASVDLPVTAHFARASPEEPALGFGLTLQPAAVAEVLlqA--Dpaglpaa 118
                 7799**********************************************************************************652..33467654 PP

      AraC_N  92 keessrglavskldeelldallRLlrlldspedipvLaplivrEilyrlLqgeqga 147
                  + ++ glavs++  ellda++RLlrlld+p+dip++apli+rEi++rlL+geqg+
  KIR61440.1 119 GPGAPAGLAVSRAPVELLDAAVRLLRLLDQPRDIPMIAPLIKREIIWRLLTGEQGG 174
                 45599*************************************************97 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.3   1.2e-21   3.6e-18       1      77 [.     209     284 ..     209     288 .. 0.95

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 1.2e-21
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPse 77 
                 +a+++g+s + ++r f++v+ ++p +y +++Rl+rAr lL+     ++a +  ++G++++++Fsr +r+ fg +P++
  KIR61440.1 209 VAQQAGMSVSAFHRNFQAVTSMSPIQYQKQIRLQRARLLLAA-NPGDIAGVSRRVGYESPAQFSREYRRQFGGPPRQ 284
                 599***********************************9975.7889****************************97 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   1.5e-15   4.5e-12       1      41 [.     196     236 ..     196     237 .. 0.97
   2 !   17.0   0.0   1.6e-06    0.0047      14      38 ..     258     283 ..     254     284 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 1.5e-15
                 HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyr 41 
                 +r+n+++++++ed+A+++g+S s F+r F+++t m+P qy 
  KIR61440.1 196 IRDNYAQPFRVEDVAQQAGMSVSAFHRNFQAVTSMSPIQYQ 236
                 89**************************************7 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.6e-06
                 HHHHTTS.SHHHHHHHHHHHSSS-HH CS
    HTH_AraC  14 iAdelgf.SrsyFsrlFkketGmtPs 38 
                 ++  +g+ S+ +Fsr +++++G  P+
  KIR61440.1 258 VSRRVGYeSPAQFSREYRRQFGGPPR 283
                 8899******************7665 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   8.1e-06     0.024      25      88 ..      44     110 ..      38     154 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.1e-06
                   EEEEEEEE-EEEEETTEEEEE-TT-EEEE-...TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG-- CS
  AraC_binding  25 vihyvteGtgrlrlngrtydlgpGdlfLlp...pgepHdyesdsedgweyrwlyfegellerileds 88 
                   v+ +v++Gt r+ l++r y+ ++Gd +      p + H+ ++++e++   + l+++++++++ l  +
    KIR61440.1  44 VLALVAQGTKRFALGDRVYEYQAGDYLVASvdlPVTAHFARASPEEPALGFGLTLQPAAVAEVLLQA 110
                   5789**********************99971115566888889999***********9999998743 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2      0.27     8e+02       1       9 [.     135     143 ..     135     145 .. 0.88
   2 ?   -2.1   0.0       1.2   3.4e+03      10      26 ..     177     193 ..     175     194 .. 0.78
   3 ?   11.9   0.0   4.8e-05      0.14      18      38 ..     205     225 ..     201     226 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.27
                 HHHHHHHHH CS
      TetR_N   1 IldaArelf 9  
                 +ldaA++l+
  KIR61440.1 135 LLDAAVRLL 143
                 79*****97 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                 HHHHTTT--HHHHHHHH CS
      TetR_N  10 aerGydattvreIAkrA 26 
                  + G    +++ IA+++
  KIR61440.1 177 RQFGLPDSSLSHIARAV 193
                 567888889999*9986 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 4.8e-05
                 -HHHHHHHHTSSHHHHHHHTS CS
      TetR_N  18 tvreIAkrAGvskgalYryFp 38 
                  v+++A++AG+s +a++r F+
  KIR61440.1 205 RVEDVAQQAGMSVSAFHRNFQ 225
                 589****************96 PP

>> Ribosomal_S14  Ribosomal protein S14p/S29e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0035        10      20      33 ..     168     181 ..     167     192 .. 0.90
   2 ?    3.5   0.0      0.02        60      27      52 ..     235     260 ..     227     261 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0035
                    SS--SSSEE-GGG- CS
  Ribosomal_S14  20 vtGrprGvirkfgL 33 
                    +tG + Gv+r+fgL
     KIR61440.1 168 LTGEQGGVLRQFGL 181
                    79***********9 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.02
                    EE-GGG-EHHHHHHHTTT...TT-EE CS
  Ribosomal_S14  27 virkfgLsRicfRelAlkgelpGvkK 52 
                    + ++ +L R ++  +A+ g++ Gv +
     KIR61440.1 235 YQKQIRLQRARLLLAANPGDIAGVSR 260
                    5577899*****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2339.83
//
Query:       KIR61441.1  [L=253]
Description: dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-43  146.6   0.3    7.8e-43  146.2   0.3    1.1  1  adh_short       short chain dehydrogenase
    3.3e-31  108.7   0.1    4.4e-31  108.2   0.1    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    7.4e-08   32.1   0.1    1.9e-07   30.8   0.0    1.8  2  Epimerase       NAD dependent epimerase/dehydratase family
    2.7e-06   27.4   0.2    4.3e-06   26.7   0.2    1.4  1  NAD_binding_10  NAD(P)H-binding
    0.00042   20.3   0.0    0.00084   19.3   0.0    1.5  1  KR              KR domain
    0.00095   18.3   0.0     0.0014   17.7   0.0    1.3  1  RmlD_sub_bind   RmlD substrate binding domain
  ------ inclusion threshold ------
       0.14   11.5   0.0       0.17   11.2   0.0    1.1  1  DUF1776         Fungal family of unknown function (DUF1776)


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.2   0.3     3e-46   7.8e-43       1     187 [.       2     178 ..       2     186 .. 0.93

  Alignments for each domain:
  == domain 1  score: 146.2 bits;  conditional E-value: 3e-46
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 ++vl+tGassG Gr++a++++++G++v+++ r+++  + v+ e    ++++ ++++Dvt  + + a++++a    g++dvLvnNAG+   g f+ +  +
  KIR61441.1   2 QTVLITGASSGYGRETARHFLEQGWNVIATMRTPR--ADVLPE----SDRLRVLELDVTRPDTITAAFAAA----GPVDVLVNNAGVGLIGVFEGTPMA 90 
                 58***************************999965..446655....4569******************99....************************ PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 ++++++e+N +gv+ +t+avlp++ ++  G +vnv+S + + +++  a+Y AsK a++g+t sla ela+ g+r  +v PG++ T   
  KIR61441.1  91 RVREIFETNTFGVMATTQAVLPQFRERGCGVVVNVTSSVVLGHMPLSAVYKASKMAIEGFTASLALELAEFGVRAKTVEPGACLTTNF 178
                 ***********************************************************************************96543 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.1   1.7e-34   4.4e-31       1     186 [.       8     186 ..       8     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: 108.2 bits;  conditional E-value: 1.7e-34
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   Ga sg Gr++A+++ e+G++v++t +  +a    + l e+   +vle+DVt++++++a++++     g +D+lvnnag+     g f+ t+ + +++
    KIR61441.1   8 GASSGYGRETARHFLEQGWNVIATMRTPRA----DVLPESDRLRVLELDVTRPDTITAAFAA----AGPVDVLVNNAGVGLI--GVFEGTPMARVRE 94 
                   899***********************9998....45555555679***************98....589************9..************* PP

                   HHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTTHH CS
  adh_short_C2  98 aldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla.asgikgfd 186
                   ++++n+ +++++++a+lp ++e+  g +vn++s      +p  ++y a+K a+e++t +lA el++ g+R  +v pg+  T+  a+g+++  
    KIR61441.1  95 IFETNTFGVMATTQAVLPQFRERgcGVVVNVTSSVVLGHMPLSAVYKASKMAIEGFTASLALELAEFGVRAKTVEPGACLTTNfAAGATSHA 186
                   ******************77766699***************************************************988876466665555 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   7.3e-11   1.9e-07       1     122 [.       4     134 ..       4     171 .. 0.82
   2 ?   -3.0   0.0       1.5     4e+03     216     227 ..     221     232 ..     219     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 7.3e-11
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHH.T-SEEEE--S---HHHHHHSH....HHHHHHHT.. CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkee.qpdavihlAavggvaassedp....adfieknl.. 92 
                 +l+tGa+   G+ +++++le+g++vi+  r ++a+   + ++l++ eld+t ++ ++++f+    +d+ ++ A+vg +++   +p     +++e+n+  
  KIR61441.1   4 VLITGASSGYGRETARHFLEQGWNVIATMRTPRADVLPESDRLRVLELDVTRPDTITAAFAAAgPVDVLVNNAGVGLIGVFEGTPmarvREIFETNTfg 102
                 79**********************************9999999********************899**********99887666522225677777522 PP

                 ..HHHHHHHHHHHHHTCTEEEEEEEGGGGTSC CS
   Epimerase  93 ..qgtlnlleaarkagvkrllflsSsevYGkd 122
                   + t+ +l   r++g+  ++++ Ss v G +
  KIR61441.1 103 vmATTQAVLPQFRERGCGVVVNVTSSVVLGHM 134
                 22446667777778888889999998888855 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHH CS
   Epimerase 216 eDvaeaillvle 227
                 +Dvaea+++++ 
  KIR61441.1 221 SDVAEAVWRAVH 232
                 59******9976 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.2   1.7e-09   4.3e-06       1      69 [.       8      77 ..       8     155 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.7e-09
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-...SEEEES-- CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkga...daVvsalg 69
                    GA+ + Gr+ +++ l++ g++v a +R+p   + l+++++l+v+e+dvt ++++++a++ a   d+ v ++g
      KIR61441.1  8 GASSGYGRETARHFLEQ-GWNVIATMRTPRA-DVLPESDRLRVLELDVTRPDTITAAFAAAgpvDVLVNNAG 77
                    99***************.5********9976.559999********************96622256555553 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.3e-07   0.00084       2     161 ..       3     152 ..       2     168 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.3e-07
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 t+litG+  g G+e+ar+ +e+g + +  + R+  +++d    + e      + +v+++Dv+ +d ++a+++++     p+   ++ Agv   + +e +
  KIR61441.1   3 TVLITGASSGYGRETARHFLEQGWNVI-ATMRT--PRADV---LPE----SDRLRVLELDVTRPDTITAAFAAAG----PVDVLVNNAGVGLIGVFEGT 87 
                 78*********************8655.56677..34443...332....346889***************9995....9******************* PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalae 161
                  +++++++++    G+    +++ +    +   ++v ++S   l  ++  a Y a    ++++ +
  KIR61441.1  88 PMARVREIFETNTFGVMATTQAVLPqfreRGCGVVVNVTSSVVLGHMPLSAVYKASKMAIEGFTA 152
                 ********999988877766665443443888888888888888888888899888887777765 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.7e-07    0.0014       2      59 ..       3      76 ..       1      85 [. 0.94

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.7e-07
                   EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...............T--TTSHHHHHHHHHHH--.SEEEE-- CS
  RmlD_sub_bind  2 kilvtGanGqlGseLakqlaeeglevlaltre...............eldltdaeavaellkeakp.dvvvnaA 59
                   ++l+tGa+   G+e a+ + e+g++v+a+ r+               eld+t+++++++++++a p dv+vn A
     KIR61441.1  3 TVLITGASSGYGRETARHFLEQGWNVIATMRTpradvlpesdrlrvlELDVTRPDTITAAFAAAGPvDVLVNNA 76
                   59***************************9999****************************9998846888877 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.7e-05      0.17     105     194 ..      81     167 ..      71     192 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.7e-05
     DUF1776 105 tgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtq 194
                 +g +e  p++ +++ ++++ +  ++t+qa lp++++   +   ++v  +s +    +p +a+      a++ ++ +L+ el++ ++   +
  KIR61441.1  81 IGVFEGTPMARVREIFETNTFGVMATTQAVLPQFRE---RGCGVVVNVTSSVVLGHMPLSAVYKASKMAIEGFTASLALELAEFGVRAKT 167
                 67788889999************************9...668888888888888899999999999999999999999999877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1829.35
//
Query:       KIR61442.1  [L=392]
Description: rhamnose isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-07   29.2   0.0    6.8e-07   28.8   0.0    1.1  1  RhaA      L-rhamnose isomerase (RhaA)


Domain annotation for each model (and alignments):
>> RhaA  L-rhamnose isomerase (RhaA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   3.8e-11   6.8e-07     115     376 ..      79     341 ..      73     352 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 3.8e-11
                 HHHHHHHHHCT-EEE.EE---SSSGGGTTS-STT-SSHHHHHHHHHHHHHHHHHHHHHHHHHTS-EEEEEE---EESS--S-SHHHHH.HHHHHHHHHT CS
        RhaA 115 enwvkwakekglgld.fnptlfshekakdgltlahpdkeirdfwiehciasrkiseyfgkelgtpsltniwipdglkdipsdrltprk.rlkesldevf 211
                  +  + ake+g+ l  +n  +f  +  + g ++++pd ++r   i+h   +  + +  g +        +w  dg+     d l  r+ rl e+l e +
  KIR61442.1  79 ADLARHAKEQGVALGaINANVFQDDDYRLG-SVTNPDPAVRRKAIDHLLECVDVMDATGSR-----DLKLWFSDGINYPGQDDLRARQdRLAEALRETY 171
                 566789999999995379999988777666.5689******************99988864.....3479*********9*999888659*******99 PP

                 CS---TTTEEEEEE--S-BTTBSSEESS-HHHHHHHH....HHCT-EEEEETTSSSTT--CHHHHHHHCTTCS-EE.EEE-B-SSSS--B---SSH..H CS
        RhaA 212 aeeldekynldavesklfglgsesyvvgshefylgya....lkrdklllldaghfhptevvsnkisslllysdkll.lhvsrpvrwdsdhvvildd..e 303
                 +    ++     +e klf     +  v   ++  +ya    l     +++d+gh+ p   + + i ++ll + kl  +        d d +v   d  +
  KIR61442.1 172 DRLGGDQRM--LLEYKLFEPAFYATDV--PDWGTAYAhclqLGPRAQVVIDTGHHAPGTNI-EFIVAVLLRAGKLGgFDFNSRFYADDDLMVGAADpfQ 265
                 765444444..59*****876555555..5555555421114567889*********9888.5788999999998624444455667788887777345 PP

                 HHHHHHHHHHTTTTTT...EEEEE----TSS-HHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHCCT-HHHHHHHHH CS
        RhaA 304 lreialeivrndlldk...vkigldffdasinriaawvigtrnvkkallkalleptaelkkleeegdyterlalle 376
                 l  i +eiv  d+l     v+  ld       +i a +    nv+ a  kall+ +a l+  +++gd  +  a+l 
  KIR61442.1 266 LFRIMHEIVLADALRPeagVAFMLDQCHNIEPKIPAVIRSVMNVQEATAKALLVDRAALRAAQDAGDVLAANAVLM 341
                 779***********641124555555555556999*999****************************988777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2693.69
//
Query:       KIR61443.1  [L=677]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-47  161.3   8.2      8e-47  159.7   8.2    1.8  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
      5e-43  146.9   4.0    9.2e-43  146.0   4.0    1.4  1  adh_short       short chain dehydrogenase
    1.7e-24   86.8   0.1    2.4e-23   83.1   0.0    2.6  3  Aldolase_II     Class II Aldolase and Adducin N-terminal doma
    2.2e-08   34.2   4.4    4.6e-08   33.2   4.4    1.5  1  KR              KR domain
    0.00021   20.8   0.4    0.00058   19.4   0.5    1.7  2  Epimerase       NAD dependent epimerase/dehydratase family
     0.0014   18.7   0.1     0.0025   17.9   0.1    1.4  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.023   13.8   1.3      0.037   13.1   1.3    1.2  1  RmlD_sub_bind   RmlD substrate binding domain
      0.071   13.0   4.6       0.14   12.0   4.6    1.5  1  NAD_binding_10  NAD(P)H-binding
       0.14   12.5   1.2       0.29   11.4   0.9    1.8  2  TrkA_N          TrkA-N domain
       0.42   10.5   2.1       0.77    9.6   2.1    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
        9.8    4.7   8.2         21    3.6   8.2    1.5  1  DUF4684         Domain of unknown function (DUF4684)


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.7   8.2   4.9e-50     8e-47       1     233 [.     425     671 ..     425     672 .. 0.87

  Alignments for each domain:
  == domain 1  score: 159.7 bits;  conditional E-value: 4.9e-50
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTT.SEE...EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelg.aev...lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsre 93 
                   Ga sgIGraiA++la+eGa vv++d++ +a   +e++a+elg a+v   +++DVtd  +v+++v+++v  +g+lD +vnnag + +  +++l+t+++
    KIR61443.1 425 GAGSGIGRAIAHRLAAEGACVVVADRDTAA---AETVARELGgADVavaVPVDVTDAGAVADAVAAAVLAYGGLDLVVNNAGLSLS--KSLLDTTEA 516
                   889**************************9...5555666553332337************************************9..********* PP

                   HHHHHHHHHTHHHHHHHHHHHHHCTSC...CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE.--BHCTG..GGGSTT CS
  adh_short_C2  94 efdraldvnlyslfllakaalplmkeg...gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavsp.gpikTla..asgikg 184
                   ++d  +dv +++ fl++++a++++ ++   g iv +ss  +  + pn+ aygaaKa   + +r lA+elg +giRvN + p g+++     a g   
    KIR61443.1 517 DWDIQHDVMAKGSFLVSREAARVLVDQgmgGDIVYISSKNSLFAGPNNVAYGAAKADQAHQVRLLAAELGGHGIRVNGINPdGVVRGSGifAGGWGA 613
                   **********************66655599**************************************************95444432232222221 PP

                   .........HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 185 .........fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                            +++l e+ ++r+ l+r + pe+va+a+ +L   e s +tG ++ vD+G+
    KIR61443.1 614 kraavygvpEERLGEYYAQRTLLKREVLPEHVANAVFVLTGGELSHTTGLHVPVDAGV 671
                   223333344677999******************************************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0   4.0   5.7e-46   9.2e-43       2     182 ..     420     600 ..     419     605 .. 0.97

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 5.7e-46
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 ++lvtGa+sGIGraia++la+eGa vvv+dr  +++e+va el+ + + a+a++vDvtd+ +v ++v++av  +g+ld++vnNAG++ s++  +++e++
  KIR61443.1 420 IALVTGAGSGIGRAIAHRLAAEGACVVVADRDTAAAETVARELGGA-DVAVAVPVDVTDAGAVADAVAAAVLAYGGLDLVVNNAGLSLSKSLLDTTEAD 517
                 89******************************************95.88************************************************** PP

                 HHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB CS
   adh_short 101 wervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlv 182
                 w+   +v  +g fl++r++++ ++ ++ +G+Iv +sS +++ + ++ +aY+A+Ka  a+ +r la el  +girvn+++P +v
  KIR61443.1 518 WDIQHDVMAKGSFLVSREAARVLVdQGMGGDIVYISSKNSLFAGPNNVAYGAAKADQAHQVRLLAAELGGHGIRVNGINPDGV 600
                 **********************9978889***************************************************765 PP

>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   1.5e-26   2.4e-23       3     186 .]       9     209 ..       6     209 .. 0.81
   2 ?    0.1   0.0      0.41   6.6e+02     148     174 ..     339     366 ..     300     377 .. 0.77
   3 ?   -2.1   0.0       1.9   3.1e+03       8      55 ..     534     580 ..     531     595 .. 0.76

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 1.5e-26
                  HHHHHHHHHHTTSSCTTBCEEEEEET.......STTEEE.EEBTSS-GGGHTGGGEEEEETTSCEEE.....................ECECSSSTB- CS
  Aldolase_II   3 laeasrllarrglvegtgGniSvrvp.......eedsfl.itpsgvdfeeltaedlvvvdldsgevv.....................egkekggkps 71 
                  +a+ +rl a+   ++  gGn+S++ +       ++ ++l +++sg d+++lt++ l+v++ld+ +++                     +   +g++ps
   KIR61443.1   9 VARSNRLGADPTTTNYAGGNTSAKGEatdpvtgGPVELLwVKGSGGDLGTLTEAGLAVLRLDRLRALadvypgvdredemvaafdyclH-GRGGAAPS 105
                  344455555999999********95334457776666666*********************9789997777777777655555544443.588999** PP

                  TTHHHHHHHHHH-TT-SEEEEE--HHHHHHHTCCSTSCHCCSSHHHHC.HSSSEEEEES-SSTTCHHHHHHHHHHHH.H.S-SEEEETTTEEEEEESS CS
  Aldolase_II  72 setplHlaiykarpdaravvHtHspaavalsalagkeglppltqeaaklllgdevpvipyaapgteelgealaealk.e.dakavllrnHGlltvGet 167
                  ++t++H  +     da  v H+H++a++al++ a+        +   k+++gd+v ++p+++pg + lg ++a+  + + +a +v+l +HG++++G+t
   KIR61443.1 106 IDTAMHGLV-----DAAHVDHLHPDAGIALATAAD-------GPALTKEIFGDRVLWVPWRRPGFQ-LGLDIAAVARaNpQAIGVVLGGHGITAWGAT 190
                  *********.....*****************5433.......3444445566************66.5799999998545777*************** PP

                  HHHHHHHHHHHHHHHHHHH CS
  Aldolase_II 168 leeAvalaetleeaaeiql 186
                   ee+ +++ ++ ++a+++l
   KIR61443.1 191 SEECERHSLEIIRTAQAYL 209
                  ***************9986 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.41
                  H.HS-SEEEETTTEEEEEESSHHHHHHH CS
  Aldolase_II 148 k.edakavllrnHGlltvGetleeAval 174
                  + +d+ +vl+ + G++  G++ + A   
   KIR61443.1 339 RgADPAIVLVPGVGMFSYGPNKQTARVA 366
                  3347789************998888655 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.9
                  HHHHHTTSSCTTBCEEEEEETSTTEEEEEBTSS-GGGHTGGGEEEEET CS
  Aldolase_II   8 rllarrglvegtgGniSvrvpeedsflitpsgvdfeeltaedlvvvdl 55 
                  r+ ar  +++g+gG i + ++ ++s++  p +v ++  +a++   v+l
   KIR61443.1 534 REAARVLVDQGMGGDIVYISS-KNSLFAGPNNVAYGAAKADQAHQVRL 580
                  555666678889999999887.88888999999999999888777765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   4.4   2.8e-11   4.6e-08       4     154 ..     422     572 ..     420     588 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 2.8e-11
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 l+tG+  g+G+++a+ la++ga  +v+  R+   ++++++  +el   ++ v  v++Dv+d+ av+ +++++    + +  v++ Ag++  k l ++t+
  KIR61443.1 422 LVTGAGSGIGRAIAHRLAAEGAC-VVVADRD---TAAAETVARELGGADVAVA-VPVDVTDAGAVADAVAAAVLAYGGLDLVVNNAGLSLSKSLLDTTE 515
                 9********************95.6667777...5666778899999999886.578****************999*********************** PP

                 HHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEHHHHH--TT-HHHHHHHH CS
          KR 103 edleqvlapKvkGawnLhelled.....esldffvlfSSiagllgsagqanYaaaNa 154
                 +d++       kG+  + +  ++          +v++SS  +l+  +  ++Y aa a
  KIR61443.1 516 ADWDIQHDVMAKGSFLVSREAARvlvdqGMGGDIVYISSKNSLFAGPNNVAYGAAKA 572
                 ****999999999999987666622222334458999***************99975 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.5   3.6e-07   0.00058       1      62 [.     421     487 ..     421     526 .. 0.79
   2 ?   -3.1   0.0       2.6   4.3e+03     137     161 ..     562     586 ..     553     598 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.6e-07
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrsalerlfke 62 
                 +lVtGa   iG+a++++l+++g  v++ dr++ a +t ++e l        v +d+td+ a++++++ 
  KIR61443.1 421 ALVTGAGSGIGRAIAHRLAAEGACVVVADRDTAAAETVARE-LggadvaVAVPVDVTDAGAVADAVAA 487
                 59*****************************7777766554.46999999999999999988877663 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.6
                 --SSHHHHHHHHHHHHHHHHHHHHT CS
   Epimerase 137 kpnspYaaaKlageklveayaaqyg 161
                 + n +Y+aaK+   ++v+ +aa+ g
  KIR61443.1 562 PNNVAYGAAKADQAHQVRLLAAELG 586
                 4577899999988888887777765 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   1.5e-06    0.0025       9      83 ..     415     489 ..     406     503 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.5e-06
                   ..TT-EEEEES-SH.HHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-S CS
  Shikimate_DH   9 slkekkvlliGaGe.maelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisat 83 
                    l+++ +l+ GaG  +++ +a+ L+a+g+  vvva R+ + a+++a+el+g+++ +    +++++ a ad v +a+
    KIR61443.1 415 PLATRIALVTGAGSgIGRAIAHRLAAEGAC-VVVADRDTAAAETVARELGGADVAVAVPVDVTDAGAVADAVAAAV 489
                   57778899*****84566677778888887.******************999888877777777777777776665 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.3   2.3e-05     0.037       4     115 ..     422     569 ..     419     610 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.3e-05
                    EEESTTSHHHHHHHHHCTTTSEEEEEE-TT....................T--TTSHHHHHHHHHHH.....--SEEEE----....--HHHHHHS CS
  RmlD_sub_bind   4 lvtGanGqlGseLakqlaeeglevlaltre....................eldltdaeavaellkea.....kpdvvvnaAAy....tavDkaEse 70 
                    lvtGa+  +G+++a++la+eg+ v+  +r+                     +d+tda ava+++++a       d+vvn A         D  E +
     KIR61443.1 422 LVTGAGSGIGRAIAHRLAAEGACVVVADRDtaaaetvarelggadvavavPVDVTDAGAVADAVAAAvlaygGLDLVVNNAGLslskSLLDTTEAD 517
                    8*********************999999999*****************************9999766222224679***99762222468****** PP

                    HHHHHHHHTHHHHHHHHHHHHC......T-EEEEEEE.GGGS-S-TTS-B-T CS
  RmlD_sub_bind  71 eeaayavnaeavealAeaaaav......galLihvSt.DyVFdGekkrpYee 115
                     + ++ v a+++  ++++aa+v      g  ++++S+    F G ++ +Y  
     KIR61443.1 518 WDIQHDVMAKGSFLVSREAARVlvdqgmGGDIVYISSkNSLFAGPNNVAYGA 569
                    *******************986444433778999988346888888888865 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   4.6   8.6e-05      0.14       1      64 [.     425     498 ..     425     526 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.6e-05
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH....CTTTCEEEE--TT-CCHHHHHHT.......T-SEE CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele....aeeglevvegdvtdvedlaealk.......gadaV 64 
                     GA  ++Gr+++++l+a+g   v++  R+++ ++ ++     ++ + +v +dvtd+ ++a+a++       g d V
      KIR61443.1 425 GAGSGIGRAIAHRLAAEG-ACVVVADRDTAAAETVArelgGADVAVAVPVDVTDAGAVADAVAaavlaygGLDLV 498
                     89999************6.8888888999998866632224455566889*********9998444444455555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       8.9   1.5e+04      43      61 ..      47      65 ..      45      67 .. 0.86
   2 ?   11.4   0.9   0.00018      0.29       3      57 ..     423     483 ..     421     491 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 8.9
                EEEES-TTSHHHHHHTTGG CS
      TrkA_N 43 evvvgdatdeevLeeagie 61
                 +v+g++ d  +L eag++
  KIR61443.1 47 LWVKGSGGDLGTLTEAGLA 65
                5799999999******985 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00018
                 EES-SH.HHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTT..SE...EEES-TTSHHHHHH CS
      TrkA_N   3 iiGlGr.vGrslaeeLseggkdvvvidkdeerveelreeg..le...vvvgdatdeevLee 57 
                 + G+G  +Gr++a++L ++g  vvv d+d +++e++++e   ++   +v  d+td  ++++
  KIR61443.1 423 VTGAGSgIGRAIAHRLAAEGACVVVADRDTAAAETVARELggADvavAVPVDVTDAGAVAD 483
                 55655439**********66579999**********9888673333466677777766655 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.1   0.00047      0.77       4      42 ..     423     462 ..     420     493 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00047
                 EE--SC.CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHH CS
     3HCDH_N   4 viGaGt.mGagiaavfasagleVvlvdiseealekaleki 42 
                 v GaG  +G+ ia+ +a++g  Vv+ d++++a+e++++++
  KIR61443.1 423 VTGAGSgIGRAIAHRLAAEGACVVVADRDTAAAETVAREL 462
                 67888669*************************9988776 PP

>> DUF4684  Domain of unknown function (DUF4684)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   8.2     0.013        21     371     424 ..     430     484 ..     406     491 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.013
     DUF4684 371 agqapgskvaalGrcsggraagadaAqavApemGLadvaaagpa.aagGsavtas 424
                  g a + ++aa G c    +  + aA++vA e+G adva+a p  +++ +av ++
  KIR61443.1 430 IGRAIAHRLAAEGACVVVADRDTAAAETVARELGGADVAVAVPVdVTDAGAVADA 484
                 57788999*********************************99624555666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 4402.24
//
Query:       KIR61444.1  [L=485]
Description: carbohydrate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-33  116.2   0.0    2.4e-33  115.6   0.0    1.3  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
    4.8e-24   85.3   0.0    6.9e-24   84.7   0.0    1.2  1  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom


Domain annotation for each model (and alignments):
>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   0.0   2.6e-37   2.4e-33       1     197 [.     248     435 ..     248     436 .. 0.94

  Alignments for each domain:
  == domain 1  score: 115.6 bits;  conditional E-value: 2.6e-37
      FGGY_C   1 akvslGTssflllvgtkpvisehglltpvagedgkpeyalegsiavagslva.wlldnlglreeirdageveeslaelaaaeavadaggvvfvpafsgl 98 
                 a+vs+GT+s+++++ + pv+ e +  ++++     +e ++ g+++ ++++++ wll++      +r  g+v ++ a l   +a+++a + v++p+ + +
  KIR61444.1 248 AYVSCGTWSLVGVELDAPVLTEASRRANFT-----NEAGVDGTVRYLRNVMGlWLLQE--S---VRTWGDV-DLPA-LLRQAAEQPAFRSVVDPDDPVF 334
                 799***************************.....88*******************99..5...6666777.4444.455699999************* PP

      FGGY_C  99 rapywdpdargti...tglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilA 194
                   p+ +p++ +     +g   + t+a+ +r++l ++al+ r  +++ ++ sg  +d ++v+GGg++n+ll+ql+Ad++g+pV ++++ eatalG+++++
  KIR61444.1 335 LPPGDMPARIADAcrrVGEPVPDTPAATVRCVLDSLALAHRRAVRQAQELSGRSVDVVHVVGGGARNELLCQLTADACGLPV-VAGPVEATALGNILVQ 432
                 ***********99999*****************************************************************6.9999************ PP

      FGGY_C 195 ava 197
                 a a
  KIR61444.1 433 ARA 435
                 988 PP

>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   7.7e-28   6.9e-24       4     245 .]       9     239 ..       7     239 .. 0.90

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 7.7e-28
                 EEEEESSEEEEEEEE.TTS-EEEEEEEE--EB-SST.T--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEESSEEE-TT- CS
      FGGY_N   4 glDcGttstkaivld.ekgkvvasaqaelelsspke.gwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpLynailwkd 100
                 ++D+G++s +++v     g+v+  +   ++    +  g+  +d+  +wq + + +r+++            +g+ +  ++  llD  +  L+n + + d
  KIR61444.1   9 AVDLGASSGRVMVGRvGPGRVALTEAHRFPNVPVRVgGTLHWDILRLWQGVVAGLRAAGPVT--------SVGVDSWAVDYGLLDATGALLGNPVHYRD 99 
                 7999999999999998899998877777765544444999***********99999877655........9**************************** PP

                 -TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--EEEHHHHCTTTSEETTTTEE-HHHHHHTT-- CS
      FGGY_N 101 rrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfvtdvtnasesmlfnikklewdeellailgip 199
                  rt +++e+++e+++ ++ly+ tgl   +++tl+ l   +     +++ ++  lli d+++++Ltg    +vtnas+++l++++ ++w   l+a +g+p
  KIR61444.1 100 ARTDGVAERVEEHLGRERLYATTGLQRLPFNTLYQLV--AAAGTPQLATADRLLLIPDLITYWLTGRLGAEVTNASTTQLYDLRRRAWATDLMAEAGVP 196
                 ***********************************96..566666678899999********************************************* PP

                 GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 200 eelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                   lLP+l +++  ig ++p l          +v+ g +D+++a++G
  KIR61444.1 197 AGLLPPLHPPGTRIGPVRPDLGLPGT---PEVVAVGSHDTASAVVG 239
                 *******************9987763...4568899********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3642.90
//
Query:       KIR61445.1  [L=259]
Description: Fe-S osidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-34  116.1   0.1    1.2e-15   57.5   0.1    2.2  2  CCG       Cysteine-rich domain


Domain annotation for each model (and alignments):
>> CCG  Cysteine-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   1.1e-19   2.1e-15       1      84 [.       3      83 ..       3      84 .. 0.97
   2 !   57.5   0.1   6.5e-20   1.2e-15       1      84 [.     134     218 ..     134     219 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 1.1e-19
         CCG  1 vayfdgChllraaypevrkalkkllealgveleelekesCCGagggrsgkeelaealakrnvetaeetgadaivtacpgCllql 84
                va+f++C l+++  p+   a+ +lle+lg e++++e+++CCG++++++g+ + a++l++r+v+ +    +d++v+++++C +++
  KIR61445.1  3 VALFVTC-LADTLFPQAAVATVRLLERLGHEVVFPEDQTCCGQMHVNTGYPDDALRLVRRHVRVFAP--YDVVVAPSGSCVGSV 83
                799****.***********************************************************..7**********8765 PP

  == domain 2  score: 57.5 bits;  conditional E-value: 6.5e-20
         CCG   1 vayfdgChllraa..ypevrkalkkllealgveleelekesCCGagggrsgkee.laealakrnvetaeetgadaivtacpgCllql 84 
                 v+y+++Ch lr+    + + ++l+++ + ++vel+++  e+CCG+gg++++k++ ++ a+ + +++++  tgad+  + +++Cl+++
  KIR61445.1 134 VTYHPTCHSLRMLrvGDRPLRLLRAVRGLELVELPQA--EQCCGFGGTFAVKNPdTSTAMLADKMRHVLATGADVCTAGDASCLMHI 218
                 89***********9999*********99999999988..**************999*****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2000.41
//
Query:       KIR61446.1  [L=476]
Description: (4Fe-4S) protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-43  148.9   0.2    2.9e-43  147.8   0.2    1.5  1  LUD_dom   LUD domain
    7.4e-13   48.7   1.1    1.5e-12   47.7   1.1    1.5  1  DUF3390   Domain of unknown function (DUF3390)
    1.7e-08   34.8   3.8    2.6e-07   31.0   4.4    2.2  2  Fer4_8    4Fe-4S dicluster domain
    3.3e-05   23.5  11.4      0.025   14.4   2.8    2.3  2  Fer4      4Fe-4S binding domain
    4.1e-05   24.0   2.1    0.00031   21.2   3.0    2.0  2  Fer4_17   4Fe-4S dicluster domain
    4.4e-05   23.5   6.6     0.0005   20.1   7.2    2.1  2  Fer4_10   4Fe-4S dicluster domain
    8.7e-05   23.0   5.4    0.00029   21.4   5.4    1.9  1  Fer4_7    4Fe-4S dicluster domain
    0.00023   21.0  12.7     0.0059   16.6   3.3    2.4  2  Fer4_2    4Fe-4S binding domain
    0.00067   20.0   7.3       0.22   12.1   0.4    2.3  2  Fer4_4    4Fe-4S binding domain
     0.0034   17.4  11.7       0.27   11.4   1.4    2.3  2  Fer4_6    4Fe-4S binding domain
     0.0048   17.7  12.7       0.26   12.3   4.7    2.4  2  Fer4_3    4Fe-4S binding domain
     0.0051   17.0   7.6       0.22   11.7   2.1    2.2  2  Fer4_9    4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.025   14.7   6.4      0.071   13.2   0.7    2.3  2  Fer4_21   4Fe-4S dicluster domain
       0.03   15.3   9.7       0.29   12.1   9.7    2.2  1  Fer4_16   4Fe-4S double cluster binding domain
      0.039   14.1   4.3       0.84    9.9   0.7    2.3  2  Fer4_18   4Fe-4S dicluster domain
      0.067   13.0   2.0        6.1    6.7   0.0    2.4  2  Fer4_20   Dihydroprymidine dehydrogenase domain II, 4Fe-4S cl
        2.3    8.8   8.2         38    4.9   8.2    2.5  1  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I


Domain annotation for each model (and alignments):
>> LUD_dom  LUD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.8   0.2   2.7e-46   2.9e-43       1     164 [.      85     295 ..      85     309 .. 0.96

  Alignments for each domain:
  == domain 1  score: 147.8 bits;  conditional E-value: 2.7e-46
     LUD_dom   1 leefienleangaevyyaktaeealelilellkeksv.......................vseggstdlgeigl...........apalhsgreevldl 65 
                 le++++++ + g++v++a++a ea++++ +l++  ++                       ++e ++tdl+e+++            pa+h++r+e++++
  KIR61446.1  85 LEQLEAAVGRAGGTVHWAADAVEANRIVTDLVRAAGAdrvmkvksmatqeiglnealeaaGIEPVETDLAELIVqlgddrpshilVPAIHRNRAEIREI 183
                 689999********************************************************************************************* PP

     LUD_dom  66 feekl..............treareelrekfltadvgitganfaiAetGtlvlvdnegnrraltflpkvhivvvginkivpdledavkrlktaprnatr 150
                 f + +              +++ar++lre fl+  v+++ganfa+AetGtl +v++egn+r++ +lp++ i v+gi+k+vp+  d++++l+++pr  t+
  KIR61446.1 184 FLRTMpgvdpaltdepaalAAAARRHLRETFLSTRVAVSGANFAVAETGTLAVVESEGNGRMCLTLPETLITVMGIEKVVPTWRDLEVFLQLLPRASTG 282
                 *************************************************************************************************** PP

     LUD_dom 151 lqkktpyvsfisgp 164
                  ++++py+s+++g 
  KIR61446.1 283 -ERMNPYTSMWTGV 295
                 .**********885 PP

>> DUF3390  Domain of unknown function (DUF3390)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   1.1   1.4e-15   1.5e-12      20      86 ..     404     476 .]     398     476 .] 0.89

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 1.4e-15
     DUF3390  20 gakasaaEklamkgfalaasspalYrlgtklatrl.......rgllPkklkaWtsvRtlPkpakkslrdlaker 86 
                 +a +++ E++am + a ++ +palY ++++ a+         rgl P  l++Wt++R+lP+p ++++r+++++r
  KIR61446.1 404 QAPHPRGEAAAMAAAAYTMDHPALYAAAQRGAKLSrlagprgRGLPPP-LSGWTASRDLPEPPPQTFRQWWADR 476
                 57899***************************9886678876666665.**********************976 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   4.4   2.4e-10   2.6e-07       2      64 ..     325     391 ..     324     392 .. 0.84
   2 !   11.7   0.2   0.00027      0.28       8      34 ..     381     414 ..     377     435 .. 0.62

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 2.4e-10
      Fer4_8   2 lekCieCgaCqsaCpvlrrtk.khlldargeaaedvqeeqvlee....eealwsCttcgaCtevCpvg 64 
                 + +Ci+C+aC + Cpv++rt+ +   + + + ++ ++ +  l++    +   ++ + cgaC ++Cpv 
  KIR61446.1 325 ALHCIRCSACLNVCPVYERTGgHAYGSVYPGPIG-AVLSPQLTGvadnASLPYASSLCGACYDACPVM 391
                 679******************8888999999999.44444444457768899**************96 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00027
      Fer4_8   8 CgaCqsaCpvlrr.......tkkhlldargeaae 34 
                 CgaC +aCpv+ +        +    ++rgeaa+
  KIR61446.1 381 CGACYDACPVMIDipsilvhLRGQAPHPRGEAAA 414
                 ********97766333333333444444444444 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   2.8   2.4e-05     0.025       8      20 ..     328     340 ..     325     341 .. 0.93
   2 !   14.1   1.5   2.9e-05     0.031      10      20 ..     380     390 ..     379     392 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.4e-05
                 SSS-THHHHHSTT CS
        Fer4   8 CigCGaCvevCPv 20 
                 Ci+C aC +vCPv
  KIR61446.1 328 CIRCSACLNVCPV 340
                 ************8 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.9e-05
                 S-THHHHHSTT CS
        Fer4  10 gCGaCvevCPv 20 
                  CGaC+++CPv
  KIR61446.1 380 LCGACYDACPV 390
                 5*********8 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   3.0   2.9e-07   0.00031       2      61 .]     328     393 ..     327     393 .. 0.76
   2 !    7.4   0.2    0.0062       6.5       5      20 ..     381     396 ..     377     428 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.9e-07
     Fer4_17   2 CiqCgyClpeCpsyeaydnepk.....kllraaklglleeaeke.ekaslCieCgeCerkCPqgld 61 
                 Ci+C++Cl++Cp ye+++ +        ++ a+ + +l+++ ++ +     + Cg C  +CP  +d
  KIR61446.1 328 CIRCSACLNVCPVYERTGGHAYgsvypGPIGAVLSPQLTGVADNaSLPYASSLCGACYDACPVMID 393
                 ****************887666333336666666667777766635678889**********8775 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0062
     Fer4_17   5 CgyClpeCpsyeaydn 20 
                 Cg+C ++Cp ++++++
  KIR61446.1 381 CGACYDACPVMIDIPS 396
                 9999999998887554 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   7.2   4.8e-07    0.0005       7      56 .]     326     389 ..     321     389 .. 0.91
   2 !    9.4   0.6    0.0011       1.1      11      23 ..     380     392 ..     378     425 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.8e-07
     Fer4_10   7 dtCirCgkCvkaCPadl..............tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                   CirC +C ++CP++                + + +++ ++ + +   +++   cgaC++aCP
  KIR61446.1 326 LHCIRCSACLNVCPVYErtgghaygsvypgpIGAVLSPQLTGVADNASLPYASSLCGACYDACP 389
                 57*************9999999999999999999999999999999999999999********9 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0011
     Fer4_10  11 rCgkCvkaCPadl 23 
                  Cg+C +aCP+ +
  KIR61446.1 380 LCGACYDACPVMI 392
                 5999999999955 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   5.4   2.7e-07   0.00029       1      50 [.     327     390 ..     327     392 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.7e-07
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenek..gt......ekveidpekClg......CgaCvavCPt 50 
                 +Ci C aC ++Cpv+ ++   +      g       +++++++++ +       CgaC ++CP+
  KIR61446.1 327 HCIRCSACLNVCPVYERTGGHAYGSVypGPigavlsPQLTGVADNASLpyasslCGACYDACPV 390
                 6************88888775422212311344455666777777663333444*********8 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   3.3   5.6e-06    0.0059       6      21 ..     324     339 ..     319     340 .. 0.85
   2 !    9.6   2.0     0.001       1.1      13      21 ..     381     389 ..     379     390 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.6e-06
      Fer4_2   6 dtdrCigCgaCvsaCP 21 
                 ++ +Ci+C+aC+++CP
  KIR61446.1 324 EALHCIRCSACLNVCP 339
                 5679************ PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.001
      Fer4_2  13 CgaCvsaCP 21 
                 CgaC++aCP
  KIR61446.1 381 CGACYDACP 389
                 ********* PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   1.6   0.00056      0.59       4      16 ..     328     340 ..     323     346 .. 0.92
   2 !   12.1   0.4   0.00021      0.22       7      15 ..     381     389 ..     379     399 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00056
      Fer4_4   4 CigCgsCvaaCPq 16 
                 Ci+C +C ++CP+
  KIR61446.1 328 CIRCSACLNVCPV 340
                 ************5 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00021
      Fer4_4   7 CgsCvaaCP 15 
                 Cg+C++aCP
  KIR61446.1 381 CGACYDACP 389
                 ********* PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   3.1   0.00044      0.46       9      21 ..     328     340 ..     328     347 .. 0.92
   2 !   11.4   1.4   0.00026      0.27      11      21 ..     380     390 ..     379     393 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00044
      Fer4_6   9 CigCgdCvrvCPe 21 
                 Ci C +C +vCP 
  KIR61446.1 328 CIRCSACLNVCPV 340
                 ************6 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00026
      Fer4_6  11 gCgdCvrvCPe 21 
                  Cg+C+++CP 
  KIR61446.1 380 LCGACYDACPV 390
                 5*********7 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   4.7   0.00025      0.26       1      13 [.     328     340 ..     328     341 .. 0.95
   2 !   10.1   1.0    0.0013       1.4       3      13 ..     380     390 ..     379     392 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00025
      Fer4_3   1 CtgCgaCvevCPv 13 
                 C+ C+aC++vCPv
  KIR61446.1 328 CIRCSACLNVCPV 340
                 ************7 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0013
      Fer4_3   3 gCgaCvevCPv 13 
                  CgaC ++CPv
  KIR61446.1 380 LCGACYDACPV 390
                 5*********7 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   2.1   0.00021      0.22      34      47 ..     326     339 ..     302     342 .. 0.77
   2 !   11.4   9.0   0.00026      0.27       2      48 ..     328     390 ..     327     392 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00021
      Fer4_9  34 eaCigCgaCveaCp 47 
                   Ci C aC+++Cp
  KIR61446.1 326 LHCIRCSACLNVCP 339
                 46999999999998 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00026
      Fer4_9   2 CtgCgaCveaCpagvvvedaaerkarlraase................eaCigCgaCveaCpk 48 
                 C++C aC ++Cp    ++ +a + +     ++                 a   CgaC++aCp 
  KIR61446.1 328 CIRCSACLNVCPVYERTGGHAYGSVYPGPIGAvlspqltgvadnaslpYASSLCGACYDACPV 390
                 ***********777777777777777766666777777777777777745678********96 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.7   6.8e-05     0.071      40      54 ..     327     341 ..     309     344 .. 0.85
   2 ?    4.0   0.6     0.052        55      44      53 ..     381     390 ..     375     394 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.8e-05
     Fer4_21  40 eCvGCnlCssvCPve 54 
                 +C+ C  C++vCPv 
  KIR61446.1 327 HCIRCSACLNVCPVY 341
                 7************95 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.052
     Fer4_21  44 CnlCssvCPv 53 
                 C  C++ CPv
  KIR61446.1 381 CGACYDACPV 390
                 8888888888 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   9.7   0.00027      0.29       1      66 [.     327     390 ..     327     391 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00027
     Fer4_16   1 rCgtCgkCaevCPtnaikek.kekeiearecisyntaekkdlaedeekckkqeaitgCdiCqdvCPa 66 
                 +C++C +C++vCP+   ++  ++ ++ +    +   ++  ++a+++   +   a   C++C d+CP+
  KIR61446.1 327 HCIRCSACLNVCPVYERTGGhAYGSVYPGPIGAVLSPQLTGVADNASLPY---ASSLCGACYDACPV 390
                 7*************887776366667777777779999999999999888...779**********7 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.7    0.0008      0.84      58      73 ..     325     340 ..     315     345 .. 0.87
   2 ?    5.3   0.2     0.021        22      63      77 ..     380     394 ..     370     399 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0008
     Fer4_18  58 agdcidcescvkvcPt 73 
                 a +ci c++c++vcP+
  KIR61446.1 325 ALHCIRCSACLNVCPV 340
                 568************7 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.021
     Fer4_18  63 dcescvkvcPtgidi 77 
                  c++c + cP+ idi
  KIR61446.1 380 LCGACYDACPVMIDI 394
                 599999999999999 PP

>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.7     0.017        18      19      39 ..     323     341 ..     313     347 .. 0.86
   2 ?    6.7   0.0    0.0058       6.1      31      50 ..     383     402 ..     377     423 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.017
                 HHHTT----TT-HHHHCSTT- CS
     Fer4_20  19 eeAsRClqCkkapcvkgCPve 39 
                 +eA  C++C  + c + CPv 
  KIR61446.1 323 REALHCIRC--SACLNVCPVY 341
                 7999*****..89******96 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0058
                 HHHHCSTT---HHHHHHHHH CS
     Fer4_20  31 pcvkgCPveidipefikkia 50 
                  c ++CPv idip+ + +++
  KIR61446.1 383 ACYDACPVMIDIPSILVHLR 402
                 699**********9887776 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   8.2     0.036        38       5      53 ..     327     390 ..     324     392 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.036
     Fer4_13   5 tCiacgaCvelaPdvFeeddeggasvvaeqpts................eeekadaeeAadaCPv 53 
                  Ci c aC +++P v+e+     +  v+ +p +                +   +++ + +daCPv
  KIR61446.1 327 HCIRCSACLNVCP-VYERTGGHAYGSVYPGPIGavlspqltgvadnaslPYASSLCGACYDACPV 390
                 5************.999999888888888777777776667777666666668888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3641.27
//
Query:       KIR61447.1  [L=126]
Description: glyoxalase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-24   86.0   0.1    3.1e-24   85.8   0.1    1.0  1  Glyoxalase_6  Glyoxalase-like domain
     0.0027   17.9   0.0     0.0033   17.6   0.0    1.1  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge


Domain annotation for each model (and alignments):
>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.1   3.5e-28   3.1e-24       2     107 .]       8     119 ..       7     119 .. 0.83

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 3.5e-28
  Glyoxalase_6   2 vvldaadpaalaaFwaaalgweveree....aaledpegvgpaaedaatllfqrvpe..paknrvHldlav..edldaevarlvalGArvlreprdg 90 
                   +vl ++dp+ la+Fw+++l+++v ++e     ++ + eg+g   + ++t+ + +++e  +ak r+H+d+++   d dae +rl+alGAr+ +  + g
    KIR61447.1   8 LVLSCRDPEVLARFWCEVLDYVVLDREgdgsIEIGPREGFG---GPQPTIILAPTDEpeRAKPRLHIDVNAtdRDQDAELERLLALGARRADVGQTG 101
                   799********************999998873344444433...3567777777777658888******88455668*******************9 PP

  Glyoxalase_6  91 thgr.vlaDPeGneFcvv 107
                   ++ + vlaDPeGneFc++
    KIR61447.1 102 EESWhVLADPEGNEFCLL 119
                   99889***********95 PP

>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.7e-07    0.0033       2     127 ..       5     117 ..       4     118 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.7e-07
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGE CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvk 100
                 i  ++l ++d+e  ++F+++vL+  +++++++   + g+r   f     + +++l++++++++++         h+ + a+d ++ ++ l+rl + g +
  KIR61447.1   5 ISELVLSCRDPEVLARFWCEVLDYVVLDREGDGSIEIGPRE-GFGGP--QPTIILAPTDEPERAKP------RLHIDVNATDRDQ-DAELERLLALGAR 93 
                 66778999***********************4444444443.44444..45555555555555555......459********99.***********77 PP

                 EEEEEECHHCTEEEEEEEEETTSEEEE CS
  Glyoxalase 101 vvaepgrhyfgalysfyfrDpdGille 127
                   ++ g ++ ++    +  Dp G+++ 
  KIR61447.1  94 RADV-GQTGEESWH--VLADPEGNEFC 117
                 6665.555555555..39999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 901.34
//
Query:       KIR61448.1  [L=947]
Description: cellulose-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-70  236.4   0.7    6.3e-70  235.7   0.7    1.3  1  Glyco_hyd_65N_2  Glycosyl hydrolase family 65, N-terminal dom
    5.4e-24   84.4  12.1    5.4e-24   84.4  12.1    2.5  2  CBM_2            Cellulose binding domain
    3.9e-05   23.3   2.9    3.9e-05   23.3   2.9    3.0  2  TAT_signal       TAT (twin-arginine translocation) pathway si
  ------ inclusion threshold ------
          2    8.3   3.6        0.5   10.2   0.1    1.7  2  COBRA            COBRA-like protein


Domain annotation for each model (and alignments):
>> Glyco_hyd_65N_2  Glycosyl hydrolase family 65, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.7   0.7   1.4e-73   6.3e-70       1     236 [.      48     285 ..      48     286 .. 0.97

  Alignments for each domain:
  == domain 1  score: 235.7 bits;  conditional E-value: 1.4e-73
  Glyco_hyd_65N_2   1 LwykqPAtn.weeaLplGNGrlGamvfGgvakEriqlNedtlWsGgprsnnnynaaeaLeeiRallfagkykeaeelaketlggesss.gayqp 92 
                      Lwy++ A++ w  aLp+GNGrlGamvfG+v++Er+qlNedt+W Ggp ++ n++ a++L+eiR  +fa++ ++a++l+++t++g++    ayq+
       KIR61448.1  48 LWYDEGAGTdWLRALPIGNGRLGAMVFGNVDTERLQLNEDTVWAGGPYDSANTRGAANLAEIRRRVFADQWSSAQDLINQTMMGTPGGqLAYQT 141
                      8**9988766****************************************************************************96577*** PP

  Glyco_hyd_65N_2  93 lgdLtldqsgdsskvtnYrReLDlstaiatveYsvegvtytrevfaSapdqVlvvrlsaskagklnltvsleselekktketvkgntltlrgal 186
                      +g+L l  +g++s +++Y+R+LDl+ta++t++Y  +gv y+revfaSapdqV+v+rl+a+ a+++++t++++s++ ++t ++ + nt+ ++g +
       KIR61448.1 142 VGNLRLA-FGSASGASQYTRTLDLTTATVTTTYVLGGVRYQREVFASAPDQVIVLRLTADRANSITFTATFDSPQ-RTTMSSPDANTIAVDGIS 233
                      *******.******************************************************************8.****************98 PP

  Glyco_hyd_65N_2 187 ka..ekdnglkfeailrvvatgGsvaadggtltvegadevtlviaaaTdykk 236
                          + ++ ++f ++++++atgG+v+++gg+l+v+ga++vt++i++ ++y +
       KIR61448.1 234 GNmeGINGSVRFLGLAHAIATGGTVSSSGGSLRVSGATSVTVLISIGSSYVN 285
                      77889999*****************************************987 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       2.2     1e+04      25      51 ..     388     411 ..     379     416 .. 0.54
   2 !   84.4  12.1   1.2e-27   5.4e-24       1      97 [.     850     945 ..     850     947 .] 0.95

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.2
                 SSS-EES-EEEEE--TTEEEEEEESEE CS
       CBM_2  25 gssaingWtvewtlpagqrvtqlWnat 51 
                 + ++  +W+ ++t++a+   ++ W a+
  KIR61448.1 388 SLAP--SWDSKYTINAN-LPMNYWPAD 411
                 3333..46666666633.334555555 PP

  == domain 2  score: 84.4 bits;  conditional E-value: 1.2e-27
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EET CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvn 97 
                 a+atyavt +W++Gf+++vtv+  g +ai gWtv+wt+p+gq + q W ++++qsG++v+++nv++Ng +a+G+s++fGf +++tg+n+ pt+ t +
  KIR61448.1 850 ARATYAVTGSWSGGFQGEVTVTA-GATAIRGWTVSWTFPNGQVISQIWGGSHTQSGSNVSVRNVDYNGALAAGASTTFGFIATTTGTNNPPTNLTCT 945
                 579******************95.78899***********************************************************999987765 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   2.9   8.6e-09   3.9e-05       2      25 ..       4      27 ..       3      28 .. 0.90
   2 ?   -2.4   3.5       1.1     5e+03      10      21 ..     916     927 ..     916     932 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 8.6e-09
  TAT_signal  2 lSRRdFLKgsAAaaAAaalggcaa 25
                ++RR+ LK++AA+a Aa+++++ +
  KIR61448.1  4 VTRRNVLKAGAAGAGAALVPAAWS 27
                89*****************99876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
  TAT_signal  10 gsAAaaAAaalg 21 
                 g++Aa+A +++g
  KIR61448.1 916 GALAAGASTTFG 927
                 677888887776 PP

>> COBRA  COBRA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.5       1.8   8.1e+03      18      26 ..     643     651 ..     638     659 .. 0.75
   2 ?   10.2   0.1   0.00011       0.5      19      46 ..     878     905 ..     870     919 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.8
       COBRA  18 kpGWkLswe 26 
                   GW+L+w+
  KIR61448.1 643 GTGWSLAWK 651
                 579*****7 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00011
       COBRA  19 pGWkLsweWakkeviwsmkGaqateqgd 46 
                  GW++sw++ +++vi +++G++ t++g 
  KIR61448.1 878 RGWTVSWTFPNGQVISQIWGGSHTQSGS 905
                 59*******************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (947 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 6686.47
//
Query:       KIR61449.1  [L=423]
Description: Isocitrate lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-99  334.4   0.2    1.6e-52  178.7   0.0    2.1  2  ICL         Isocitrate lyase family
    3.1e-17   62.8   0.4      6e-17   61.9   0.4    1.4  1  PEP_mutase  Phosphoenolpyruvate phosphomutase


Domain annotation for each model (and alignments):
>> ICL  Isocitrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   0.0   1.8e-56   1.6e-52       7     253 ..      11     246 ..       4     250 .. 0.90
   2 !  155.1   0.0   2.6e-49   2.3e-45     352     526 .]     247     422 ..     245     422 .. 0.90

  Alignments for each domain:
  == domain 1  score: 178.7 bits;  conditional E-value: 1.8e-56
                 HHHTSGGGGG---SS-HHHHHHH--SS----T.HHHHHHHHHHHHHHHHHHT--EEEEB--SHHHHHHHHHH.-S-EEE-HHHHHHH--TT----SS-S CS
         ICL   7 kwwsdsrwrktkrvysaedivskrGnlkieya.sseqakklfklleeheaektasktfGaldpvqvtqmaky.ldtiyvsGwqssstastsnepspdla 103
                 +w +d+rw+  +r y aed+v  rG+++ e++ + + a++l++ll++++      ++ Gal   q  qm +  l +iy+sGwq ++ a  +    pd +
  KIR61449.1  11 EWETDPRWQGVRRGYRAEDVVRLRGAIQEEHTlARHGAQRLWRLLHSED----YVHALGALTGNQAVQMVRAgLKAIYLSGWQVAADANLAGHTYPDQS 105
                 57789***********************8877256789*******8765....55689***********9855************************** PP

                 -S-TTHHHHHHHHHHHHHHHHHHHHHHHHHSS-HHHHTTS--------EEEE-TT-SSSHHHHHHHHHHHHHTT-SEEEE-SB-TT---------EEE- CS
         ICL 104 dypmdtvpnkvehlflaqlfhdrkqkeerlkvkkeereklanvdylrpiiadadtGhGGltavvkltklfierGaaGihiedqasgtkkcGhmaGkvlv 202
                  yp ++vp  v  +  a l      + +++++++ ++      d+l pi+ada++G+GG      l   +i  GaaG+h edq ++ kkcGh+ Gkvlv
  KIR61449.1 106 LYPANSVPAVVRRINNALL------RAAQITTAEGDE---NGTDWLAPIVADAEAGFGGPLNAYELMTAMIAAGAAGVHWEDQLAAEKKCGHLGGKVLV 195
                 ************9999877......344444444333...356******************************************************** PP

                 -HHHHHHHHHHHHHHHHHTT---EEEEE--GGGEEEES-TT-GGGGGGEEE CS
         ICL 203 piqehinrlvairaqadilgsdllvvartdseaatlitstidtrdhafilG 253
                 p   hi  l a+r++ad+ g+  +++artd++aatl+t+ +d+rd  f+ G
  KIR61449.1 196 PTGAHIRTLEAARLAADVAGVPSVIIARTDAQAATLLTTDVDERDRPFVTG 246
                 *************************************************98 PP

  == domain 2  score: 155.1 bits;  conditional E-value: 2.6e-49
                 S--TT--EEE--SHHHHHHHHHHHTTS-SEEE---SS--HHHHHHHHHHHHTT-TT-EEEEE--SSS-GGGTS-HHHHHSHHHHHHHTTEEEEEETTHH CS
         ICL 352 prvreGyyrykGgtqcsvvravafapyadliwmesklpdyaqakefaeGvkakvpeqklaynlspsfnwkkamsadeqetyikrlaklGyvwqfitlaG 450
                  r+ eG+yr + g++ ++ r++a+ap+adl+wme+++pd++ a+ fae +ka +p+q layn spsfnw+k        ++ + l+++Gy +qfitlaG
  KIR61449.1 247 ERTAEGFYRVRNGVEPCIARGLAYAPHADLLWMETSTPDLEIARRFAEAIKAEHPDQLLAYNCSPSFNWRKHLDDATIAKFQRELGHMGYKFQFITLAG 345
                 599***********************************************************************99*********************** PP

                 HHHHHHHHHHHHHHHHHHTHHHHHHHTHHHHHH...HT-GGGSHHHHHTHHHHHHHHHHHH--XXXXXXXXXXXXXXXX CS
         ICL 451 lhtnalisdkfakdyakrGmkaygeevqeeeid...nGvdvvkhqkwsGaeyidellklvtGGvsstaamGkGvtedqf 526
                 +h+      ++a+ ya +Gm ay+  +qe+e +    G   vkhq+  G+ y+d +  +++    +ta +     e+qf
  KIR61449.1 346 FHALNYSMFDLARGYAADGMSAYVS-LQEREFAaepAGYTAVKHQREVGTGYFDLISTVLNPAAETTA-LRGSTEEEQF 422
                 ***********************96.6777765233699***************88777766655555.5444566776 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.4   6.7e-21     6e-17      19     192 ..      69     297 ..      52     329 .. 0.82

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 6.7e-21
  PEP_mutase  19 alsakiveeagfkalatsSlavaas.....lGvpDgeelpleellaavraiaevvs..................lPlivDledGygespeevaetvrrl 94 
                 +  a  + +ag ka+ +s+++vaa      + +pD++  p++++ a+vr+i +++                    P+ +D+e+G+g  p +  e  + +
  KIR61449.1  69 GNQAVQMVRAGLKAIYLSGWQVAADanlagHTYPDQSLYPANSVPAVVRRINNALLraaqittaegdengtdwlAPIVADAEAGFGG-PLNAYELMTAM 166
                 5556677899************98522222579********************997899***************************9.99********* PP

  PEP_mutase  95 iaaGvvgvniEDk.....kknd.aerqlldieefaekiaaaraaaeeag..fvinARtdalll.........................sagagleeaie 160
                 iaaG++gv+ ED+     k++  +++ l++   + + ++aar aa+ ag   vi+ARtda                            + ++g+e  i+
  KIR61449.1 167 IAAGAAGVHWEDQlaaekKCGHlGGKVLVPTGAHIRTLEAARLAADVAGvpSVIIARTDAQAAtllttdvderdrpfvtgertaegfyRVRNGVEPCIA 265
                 **************986444456888888********************999********887888899999999999999888888888888889999 PP

  PEP_mutase 161 RaraYaeAGAdgvfvpglqkdaei.aelvaavd 192
                 R+ aYa   Ad + +   + d ei +++++a++
  KIR61449.1 266 RGLAYAPH-ADLLWMETSTPDLEIaRRFAEAIK 297
                 99998876.777777777766664266666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 2810.21
//
Query:       KIR61450.1  [L=536]
Description: malate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.8e-186  618.1   0.0   1.1e-185  617.9   0.0    1.0  1  Malate_synthase  Malate synthase
     0.0069   16.3   0.2      0.038   13.9   0.2    2.0  2  LppA             Lipoprotein confined to pathogenic Mycobacte
  ------ inclusion threshold ------
       0.13   12.4   0.5       0.24   11.5   0.5    1.3  1  SLATT_3          SMODS and SLOG-associating 2TM effector doma


Domain annotation for each model (and alignments):
>> Malate_synthase  Malate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  617.9   0.0  1.9e-189  1.1e-185       2     523 ..       4     522 ..       3     525 .. 0.98

  Alignments for each domain:
  == domain 1  score: 617.9 bits;  conditional E-value: 1.9e-189
                      CCCCHHTHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHSHHHCCTCCCH-TSS---S-EECCCCE-TCCCCCCC-CCHCC CS
  Malate_synthase   2 dfvkeevleaaeilteealefvaelvrdltprrrelLeeRdelqaeidkgelndflketkylreepewktatlhielqdrrveiiGkadrkmii 95 
                      ++ ++++++++e+lt +alef++el  +++ rr +lL++R+ ++ ++ +g+l+dfl+et+++r++p+w++a+ +++l drrvei+G+ drkm +
       KIR61450.1   4 EIIGPMADRFDEVLTPAALEFLVELDSEFAARRVALLDTRRARRDRYATGQLPDFLPETAAIRADPTWRVAPPAPGLLDRRVEITGPPDRKMTV 97 
                      67889999************************************************************************************** PP

                      CCCCCSSSEEEEESSTTS--HHHHHHCCHHCCCHCCTTT-EEEET-TSEEEEETTSESSSSEEEEE---TTTEEEEEECTTCEEEHHHHHHHHH CS
  Malate_synthase  96 nalnesaittiaDfEDsvapnwenlvkGqlnledavrgrisfrkenkdksYklndglegrsllfvRnrGwhltekhilvdGeeisegilDfgli 189
                      naln++a++++aDfED+++p+w+n+v+Gqlnl da ++ri+f+++ ++k+Y+l    +++++++vR+rGwhl ek i vdG +is++++Dfgl+
       KIR61450.1  98 NALNSGARVWLADFEDATSPTWHNVVSGQLNLIDALDRRIDFTDA-RGKRYALG---DELATIVVRPRGWHLVEKGIAVDGRPISASLVDFGLY 187
                      ********************************************8.********...79*********************************** PP

                      HHHHHHHCSCCTTSSEEEEE-S-SSHHHHHHHHHHHHHHHHHCTSSTTSCEEEEEE-SHHHHTTHHHHHHCTTTTEEEEEE-CHHHHHHHHHHT CS
  Malate_synthase 190 ffhnakelklsrgggpyivlPKmegpqEaalwnevFsraedllglprgtikatvliEtlraslnldeiiyelrdrvaglNcGrlDyifseiktl 283
                       fh a+++ l+ g gpy++lPK+e+++Ea+lwn+vF +a++ lglprgti+at liEt++a+++++ei+yelr+++aglN+Gr+Dyifs i+++
       KIR61450.1 188 LFHCARRQ-LDAGAGPYFYLPKLESHHEARLWNDVFVFAQQRLGLPRGTIRATTLIETITAAFEMEEILYELREHSAGLNAGRWDYIFSVIRNF 280
                      ********.************************************************************************************* PP

                      CCCCGCB...CGGGGCCSHHHHHHHHHHHHHHHHTT.CCCCCCCTCSEECCCEHHHCCCHHHHHHHCHHHHHCT-SEEEESSHHHHHHHHHHHH CS
  Malate_synthase 284 reagdmvLPdRkavtktapfikaYekllvktchkrgvhamgGlaakipikkdmeaneellekvredKlrevraGadgaWvahPtlatlaaevfe 377
                       + +d+vLPdR++vt+t+pf++aY++llv tch+rg+ha+gG+aa++p+++ ++ ne +l++vr+dK re+ +G+dg+WvahP+l+ +++e f+
       KIR61450.1 281 GQWSDFVLPDRSEVTMTVPFMRAYTELLVATCHRRGAHAIGGMAAFVPSRD-PQVNEVALHRVRADKRREAGDGFDGSWVAHPGLVATCREEFD 373
                      ************************************************985.699*************************************** PP

                      HCH.CHCHHCCHHTTTHHHHHHHHCS..--BBHHHHHHHHHHHHHHHHHHHHHHCT-SSEEETTEEESHHHHHHHHHHHHHHHHTTSC-CCHSH CS
  Malate_synthase 378 evd.vapnQielakeevritaddLlt.kipeaeeteeglrnnvqvglqYvvaWlrgvGcvpiihLmEDaATaeiSrqqlaqWirhgvvlkeqgv 469
                      +v  ++p+Q +  +++v++ a+dLl+     ++ t++g+r+n+ v+l+Y+ aWl g G+v++ +LmEDaATaei r+q++qW++hg  l + g 
       KIR61450.1 374 AVLgERPHQLDRLRDDVSVAAADLLAvDKTPGQVTAAGVRANIAVALRYIDAWLGGAGAVALWNLMEDAATAEIARCQVWQWLHHGTPLAD-GG 466
                      **999********************9888899***********************************************************.79 PP

                      CHHHHHHHHHHHHHCCHHH.HHHH.CCTTHHHCHHHHHHHHHTTTCCC-CHHHHHC CS
  Malate_synthase 470 kvslelmaklvdeenarle.elgk.edeayreaakllkkeataeefadfltlkayk 523
                       v+ el+++++ +e a+l    g  + e+ ++aa++++ +a +e++ +f t+ ay 
       KIR61450.1 467 CVTDELVRSILAQELAELVtGRGAaDRERAERAARIVEDTAFGEDLPAFFTTGAYA 522
                      ****************9995333358899999********************9996 PP

>> LppA  Lipoprotein confined to pathogenic Mycobacterium
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.24   1.4e+03     120     142 ..     134     156 ..     130     161 .. 0.83
   2 !   13.9   0.2   6.3e-06     0.038      39     103 ..     438     507 ..     432     516 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.24
                 -EEEEEEET.TEEEEEEESSSEE CS
        LppA 120 dhdvrftgpeGgeiklgtakaav 142
                 d+ ++ft+ +G ++ lg + a++
  KIR61450.1 134 DRRIDFTDARGKRYALGDELATI 156
                 7899**********999876655 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 6.3e-06
                 HHHHHHHHHSTT--.EEE---HH...HH-EE.SSS-TTTEEE-B---EEESS---HHHHHHHHHHHHHHH CS
        LppA  39 riadaisalvpglt.Wktdedrs...rngCe.dpyeetdgrrvalesvvsagpipddqWpqaleiVrelA 103
                  + da++a++   + W++ ++ +     gC  d++ +++ +++ +e v+++g+   ++ ++a++iV+++A
  KIR61450.1 438 LMEDAATAEIARCQvWQWLHHGTplaDGGCVtDELVRSILAQELAELVTGRGAADRERAERAARIVEDTA 507
                 577899999999888*****6666669*****************************************98 PP

>> SLATT_3  SMODS and SLOG-associating 2TM effector domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5     4e-05      0.24      28     122 ..     390     487 ..     379     506 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4e-05
     SLATT_3  28 llvvAAlaaalslkvgsvdlaallaalafllalvievvlarrrperkWy..egRavAEsvKtlaWrYavrgepFeee..lesaeaeklfrerleevlre 122
                 + v+AA + a++ + g+v++a  + a + ++  +i  +l    + + W+  e  a AE +    W++  +g+p ++    +++ +++ ++++l+e+++ 
  KIR61450.1 390 VSVAAADLLAVDKTPGQVTAAG-VRANIAVALRYIDAWLGGAGAVALWNlmEDAATAEIARCQVWQWLHHGTPLADGgcVTDELVRSILAQELAELVTG 487
                 5677777777776776664444.444444455688999999999999973356799******************4431134455566666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3542.63
//
Query:       KIR61451.1  [L=259]
Description: IclR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-38  129.1   0.1    1.4e-37  128.4   0.1    1.4  1  IclR           Bacterial transcriptional regulator
    7.9e-17   60.8   1.8    7.9e-17   60.8   1.8    2.1  2  HTH_IclR       IclR helix-turn-helix domain
    8.2e-05   22.1   0.0    0.00016   21.1   0.0    1.5  1  HTH_24         Winged helix-turn-helix DNA-binding
    0.00046   20.0   0.5    0.00046   20.0   0.5    2.1  2  MarR_2         MarR family
     0.0039   17.1   0.0     0.0077   16.2   0.0    1.4  1  DUF977         Bacterial protein of unknown function (DUF977)
  ------ inclusion threshold ------
      0.034   14.0   1.4      0.064   13.1   0.4    2.0  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain
      0.052   13.4   0.0       0.11   12.4   0.0    1.5  1  HTH_5          Bacterial regulatory protein, arsR family
       0.07   13.2   0.0       0.15   12.1   0.0    1.6  1  HTH_29         Winged helix-turn helix
        0.1   12.5   0.0        0.2   11.5   0.0    1.4  1  TrmB           Sugar-specific transcriptional regulator TrmB
       0.17   11.1   0.1        8.2    5.6   0.0    2.2  2  EAP30          EAP30/Vps36 family


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.4   0.1     8e-41   1.4e-37       2     127 ..     125     250 ..     124     252 .. 0.98

  Alignments for each domain:
  == domain 1  score: 128.4 bits;  conditional E-value: 8e-41
                 SEEETTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEE CS
        IclR   2 rlravsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvs 100
                  +++ +++G+r+p+yat++G++lLaa++++ l+ +l +  l +lt++T+tdp+ L+++L ++ +qGya+ ++E eeg+r++Aapi++++g+vvaA++vs
  KIR61451.1 125 IMTVGISVGSRFPAYATSMGRVLLAAQPADWLDDYLATARLRPLTRHTVTDPARLRAALTTIAAQGYAIVDQELEEGLRSLAAPIHGEHGSVVAAINVS 223
                 58999********************************************************************************************** PP

                 EETTTSHHHHHHHHHHHHHHHHHHHHH CS
        IclR 101 gptarlteeelkeellalvreaArkis 127
                 ++++r + e+++ ell+ + ++A+ ++
  KIR61451.1 224 AHASRGSSETIRTELLPPLLATAKRVE 250
                 ***********************9987 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   1.8   4.4e-20   7.9e-17       1      52 []      12      63 ..      12      63 .. 0.98
   2 ?   -2.7   0.1       3.1   5.5e+03      33      45 ..     177     189 ..     157     192 .. 0.53

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 4.4e-20
                HHHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE... CS
    HTH_IclR  1 sldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqdg 52
                sl+R+la+++a+ ++ ++ltlse+Ar+tgl++++++R+L tLvelGyv +dg
  KIR61451.1 12 SLERGLAVIRAFDAEHPRLTLSEVARATGLTRAAARRFLLTLVELGYVHTDG 63
                89**********************************************9996 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.1
                 HHHHHHHHHHHHT CS
    HTH_IclR  33 StvhRlLqtLvel 45 
                 +  +  L t   +
  KIR61451.1 177 ARLRAALTTIAAQ 189
                 3334444444444 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   9.1e-08   0.00016      14      47 ..      26      59 ..      16      60 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 9.1e-08
      HTH_24 14 knprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                ++pr++ +e+A+++gl++++ +r l  L+e G++
  KIR61451.1 26 EHPRLTLSEVARATGLTRAAARRFLLTLVELGYV 59
                59*******************************8 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.5   2.6e-07   0.00046      18      53 ..      24      61 ..      15      65 .. 0.83
   2 ?   -0.7   0.1      0.74   1.3e+03      27      51 ..     168     192 ..     161     204 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.6e-07
                TTS..EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2 18 pgr..dltvgelarrlglsksavsrilkrLvaaGLver 53
                + +  +lt +e+ar++gl+++a+ r l  Lv+ G+v +
  KIR61451.1 24 DAEhpRLTLSEVARATGLTRAAARRFLLTLVELGYVHT 61
                444446*****************************965 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.74
                 HHHHHTSSHHHHHHHHHHHHHTTSE CS
      MarR_2  27 larrlglsksavsrilkrLvaaGLv 51 
                 l+r++  +++++  +l    a+G+ 
  KIR61451.1 168 LTRHTVTDPARLRAALTTIAAQGYA 192
                 5667777888888888888888886 PP

>> DUF977  Bacterial protein of unknown function (DUF977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.3e-06    0.0077      23      62 ..      26      65 ..      11      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.3e-06
      DUF977 23 kneritisdleritGvgrtsvrkylvdvlerGdlirpGky 62
                ++ r+t+s++ r+tG  r ++r++l   +e G +   G+ 
  KIR61451.1 26 EHPRLTLSEVARATGLTRAAARRFLLTLVELGYVHTDGRL 65
                678*****************************99999985 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   3.5e-05     0.064      14      36 ..      26      48 ..      20      48 .. 0.92
   2 ?   -2.3   0.0       2.4   4.2e+03       9      20 ..      93     104 ..      93     105 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.5e-05
  HTH_AsnC-type 14 edaRisyaeLAervGlSestvlr 36
                   e +R++ +e+A+++Gl++++++r
     KIR61451.1 26 EHPRLTLSEVARATGLTRAAARR 48
                   579*****************987 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.4
  HTH_AsnC-type   9 LeaLqedaRisy 20 
                    LeaL ++ R s+
     KIR61451.1  93 LEALAAQVRESC 104
                    789999999886 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     6e-05      0.11      16      46 ..      30      60 ..      25      61 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6e-05
                EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5 16 lcvcelaeelglsqstvShHLkkLreaGLVe 46
                l+ +e a+++gl++++ ++ L  L e+G+V+
  KIR61451.1 30 LTLSEVARATGLTRAAARRFLLTLVELGYVH 60
                899***************************7 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.4e-05      0.15       3      40 ..      18      57 ..      17      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.4e-05
      HTH_29  3 qallllaeGvs..tvsqiAkllglsrrtvyrwlkrfeegG 40
                +++++ + +++  t s++A+++gl+r   +r+l   +e G
  KIR61451.1 18 AVIRAFDAEHPrlTLSEVARATGLTRAAARRFLLTLVELG 57
                5788888899999********************9988887 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011       0.2      19      54 ..      26      61 ..      25      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
                HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEE CS
        TrmB 19 klgpatadeiaeelgvprskvYevLrsLedkGlVer 54
                ++ ++t +e+a+++g+ r+ + + L  L++ G+V++
  KIR61451.1 26 EHPRLTLSEVARATGLTRAAARRFLLTLVELGYVHT 61
                577899****************************87 PP

>> EAP30  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0046       8.2     194     235 ..      26      62 ..       4      63 .. 0.80
   2 ?    3.6   0.0      0.02        35     181     236 .]     147     196 ..      87     196 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0046
       EAP30 194 kssgggvtaselaeeeenlgwsvarakeaLeelereGllwvD 235
                 ++    +t se+a++   +g+++a a++ L +l++ G++  D
  KIR61451.1  26 EH--PRLTLSEVARA---TGLTRAAARRFLLTLVELGYVHTD 62 
                 23..359*****777...*******************98766 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.02
       EAP30 181 levakrlvsllaekssgggvtaselaeeeenlgwsvarakeaLeelereGllwvDd 236
                 l +a+ + ++l++  +    + + l   ++++  + ar ++aL +  ++G++ vD+
  KIR61451.1 147 LLAAQPA-DWLDDYLA--TARLRPL---TRHTVTDPARLRAALTTIAAQGYAIVDQ 196
                 4444443.45555544..3555566...6779999*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 1616.23
//
Query:       KIR61452.1  [L=393]
Description: beta-ketoadipyl CoA thiolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-69  232.5   0.0    6.8e-69  232.1   0.0    1.1  1  Thiolase_N     Thiolase, N-terminal domain
    5.8e-39  132.5   0.2    5.8e-39  132.5   0.2    1.7  2  Thiolase_C     Thiolase, C-terminal domain
  ------ inclusion threshold ------
      0.025   14.2   0.8      0.025   14.2   0.8    1.8  2  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.1   0.0   1.1e-72   6.8e-69       1     259 [.       5     262 ..       5     263 .. 0.92

  Alignments for each domain:
  == domain 1  score: 232.1 bits;  conditional E-value: 1.1e-72
                 EEEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHT.S-GGGCCEEEEEHSSCTTSTSC.HHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigkfggslkdlsaeeLlaealkallekag.vdpeevdevivGnvlqagegqn.iarqaalkagipeevpavtvnkvcsSglkavalaaq 97 
                 v++ +a+rtpig+ gg l+ ++ ++L+a+++++++++ + +dp+ +d+v +G    age++  +ar+a+l ag+p +vp  tvn++c+Sgl+av+ a +
  KIR61452.1   5 VYVLDAVRTPIGRHGGGLAGVRPDDLAAHVVREVVARSPgLDPARIDDVLLGDANGAGEDNRdVARMAVLLAGLPPSVPGATVNRLCGSGLEAVIGASR 103
                 7899**********************************99*****************998888************************************ PP

                 HHHTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHH.HTEETT...TTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTT CS
  Thiolase_N  98 siaageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipd.gladaf...neehmGltaenlakkykisReeqdefAvkshqkaaaaqkagk 192
                 ++a g+a++++agGvEsms+ap + + +    +  g+e+++ +++    ++ a+     + +G  ae la++++i+Re+qdefA+ shq+a  a+ ag 
  KIR61452.1 104 AVALGDASICLAGGVESMSRAPWVLP-KPEGAYPRGHETLHSTTLGWrMVNPAMppqWTVALGEGAEILAERHGITRERQDEFALGSHQRADRAWRAGT 201
                 *************************9.88877788888877777644233333311156789************************************* PP

                 TTTTBE-EEEEESSSEEEE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 193 FkdeivPvkvkgkkgkktvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmse 259
                 ++de+vPv  ++      vd+de ir+ +tae+L +lkp+F+ +GtvtAgn+s+++DGa+ +l++ e
  KIR61452.1 202 YADEVVPVPGTD------VDRDESIRPTTTAEALGRLKPVFRPAGTVTAGNSSPLNDGASVLLIADE 262
                 ********9888......89********************************************987 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.3      0.56   3.4e+03     101     115 ..     104     118 ..      84     121 .. 0.70
   2 !  132.5   0.2   9.6e-43   5.8e-39       3     122 ..     272     392 ..     270     393 .] 0.97

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.56
                 TTSEEEEEEEETTTE CS
  Thiolase_C 101 ggklgvaalCigggq 115
                    lg a++C +gg 
  KIR61452.1 104 AVALGDASICLAGGV 118
                 455677899999985 PP

  == domain 2  score: 132.5 bits;  conditional E-value: 9.6e-43
                 -SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHH.T--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHHC CS
  Thiolase_C   3 plakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakal.dldlekvNvnGGaialGHPlGasGaRivvtllselkke 100
                 pla+i+s a++g +p+ +g+gP+ a++++l +agl  +d+d++E+nEAFaaq La++ +  dld+  vN +GGaialGHPlG sG+Ri+ +l+ +l+++
  KIR61452.1 272 PLARIVSRAVTGIEPHLFGIGPVAAAEEALRRAGLGWADLDVVELNEAFAAQSLACLAHWpDLDPAIVNPQGGAIALGHPLGSSGSRILGSLAWQLHRR 370
                 89******************************************************887549************************************* PP

                 TTSEEEEEEEETTTEEEEEEEE CS
  Thiolase_C 101 ggklgvaalCigggqgvalvie 122
                 gg  g+aa+Cig gqg a+v+e
  KIR61452.1 371 GGGRGLAAICIGVGQGLAVVLE 392
                 ********************98 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.8   4.1e-06     0.025     171     206 ..      87     122 ..      82     128 .. 0.88
   2 ?   -2.6   0.1      0.54   3.2e+03      94     110 ..     295     311 ..     294     319 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.1e-06
                    EESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE--- CS
  ketoacyl-synt 171 vdtACsSslvavhaavqslrsgeadvalaGGvelll 206
                    v   C S+l av  a +++  g+a+++laGGve + 
     KIR61452.1  87 VNRLCGSGLEAVIGASRAVALGDASICLAGGVESMS 122
                    5556*****************************875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.54
                    HHHHHHHHHHTS-HHTC CS
  ketoacyl-synt  94 eaawealedagltpeel 110
                     aa+eal++agl  ++l
     KIR61452.1 295 AAAEEALRRAGLGWADL 311
                    6899*******976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 2487.11
//
Query:       KIR61453.1  [L=256]
Description: 3-oxoadipate:succinyl-CoA transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-38  129.8   0.0    1.1e-37  129.6   0.0    1.0  1  CoA_trans        Coenzyme A transferase
  ------ inclusion threshold ------
      0.048   13.6   0.0      0.071   13.1   0.0    1.2  1  AcetylCoA_hydro  Acetyl-CoA hydrolase/transferase N-terminal 


Domain annotation for each model (and alignments):
>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.6   0.0   1.2e-41   1.1e-37       2     213 ..      10     216 ..       9     220 .. 0.97

  Alignments for each domain:
  == domain 1  score: 129.6 bits;  conditional E-value: 1.2e-41
                 CHHHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHTTTSEEEEESTTTEECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHHHH CS
   CoA_trans   2 etaaeavakeikdGmtvavGGFgligiPealiaalarsgvkdltviiseagvlglgplllngsvkkviasyggetvnprfgkqflsgelefellpqgtl 100
                 e+++ a+a++++dG +++vG    ig+P + +a+lar ++++  v+ +e+g lg++p  l+ s+++ i+    +t++ +++       + f ++ q ++
  KIR61453.1  10 EMMTVAAARQLRDGTVCFVG----IGLP-STAANLARVTHAPGLVLVYESGCLGAKPDRLPLSIGDGIL---ADTADAVVSVP-----EVFNYWLQPGR 95 
                 799*****************....****.****************************************...88889999999.....99********* PP

                 HHHHHHHHHTEETTEEEESTTTT.SHGGTTESEEEEETTEEEEEEESSSEEEEEEECCEEETTCSEESSGGGHTTHSHHHHH.........HEEEEEEE CS
   CoA_trans 101 aerlraGgaglpelgfltntgig.tlvapklkkvpgfgGaeyilepalkadvalikaskadeegnlvfeksagnfnkpaiae.........aakvtile 189
                 +++ ++G+a+l+++g++++t+ig  + +p   ++pg gGa++i+ ++   +v+++++s++ + ++++f +s+g++ +p  +            ++t+l+
  KIR61453.1  96 IDVGFLGAAQLDRHGNINTTVIGgSYADPA-VRLPGAGGAPEIAASCG-EVVVIVRQSRRTFTERVDFVTSVGYGAGPGDRArlglrgggpRTVITDLG 192
                 ******************************.6****************.5**************************9987778********88****** PP

                 EEEEECTTSSECCCESBTGGGHSE CS
   CoA_trans 190 veeivekgkldpekvliPgvlvda 213
                 v+e ++ + +++++ l+Pgv+v++
  KIR61453.1 193 VLEADPATGELTLTRLHPGVTVEQ 216
                 **********************97 PP

>> AcetylCoA_hydro  Acetyl-CoA hydrolase/transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.9e-06     0.071      97     145 ..      66     116 ..      59     154 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.9e-06
  AcetylCoA_hydro  97 kainqglvsfvdkhlsevpqklekgfvp..iDvalieataldedGylnlGv 145
                        i +g++ ++   +  vp+ +++   p  iDv ++ a+ ld++G +n  v
       KIR61453.1  66 LSIGDGILADTADAVVSVPEVFNYWLQPgrIDVGFLGAAQLDRHGNINTTV 116
                      56778999999999999*****************************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1764.10
//
Query:       KIR61454.1  [L=272]
Description: 3-oxoadipate:succinyl-CoA transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-22   79.2   0.0    3.8e-22   78.8   0.0    1.1  1  CoA_trans  Coenzyme A transferase


Domain annotation for each model (and alignments):
>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   2.1e-26   3.8e-22       3     214 ..       6     221 ..       4     223 .. 0.86

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 2.1e-26
                 HHHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHTTTSEEEEESTTTEECCHHHHHTTTEEEEEESCTTBBC...EHHHHHHHHTT...SSEEEEH CS
   CoA_trans   3 taaeavakeikdGmtvavGGFgligiPealiaalarsgvkdltviiseagvlglgplllngsvkkviasyggetv...nprfgkqflsg...elefell 95 
                 ++a+ +a+ ++dG++va+ GF++  iP a+ ++++r+g ++lt +  +  v   + l+ +g+  + ++s gg+       rf+ ++ ++    le+e+ 
  KIR61454.1   6 SLADGIAELVHDGDVVALEGFTHL-IPFAAGHEIIRQGRRGLTLVRMTPDV-IYDQLIGAGCASRLVFSWGGNPGvgsLHRFRDAVQHSwpvPLELEEH 102
                 678899***************987.799**************999877755.79**************88887558987888888777733246***** PP

                 HHHHHHHHHHHHHHTEETTEEEESTTTTSHGGTTESEEEEET....TEEEEEEESSSEEEEEEECCEEETTCSEESSGGGHTTHSHHHHHHEEEEEEEE CS
   CoA_trans  96 pqgtlaerlraGgaglpelgfltntgigtlvapklkkvpgfg....Gaeyilepalkadvalikaskadeegnlvfeksagnfnkpaiaeaakvtilev 190
                 +  ++a r +aG++glp +++l +  +gt++   +  ++ ++    G+++ + pal++dv++++a++ad++gn+++++++g  ++ ++a  a++  ++v
  KIR61454.1 103 SHAGMANRYVAGASGLP-FAVL-RGYTGTDLPRHTATIRSVDcpftGETLTALPALRPDVTVVHAQRADRAGNVQMWGITGVQKEAVLA--ARRSLVTV 197
                 *****************.3433.33445555555567777777788***********************************99988888..9******* PP

                 EEEECTTSSECCCESBTGGGHSEE CS
   CoA_trans 191 eeivekgkldpekvliPgvlvdav 214
                 ee+v++ +  p +v+ Pg  + av
  KIR61454.1 198 EELVDELTPVPGQVVLPGWAITAV 221
                 ******************999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1815.49
//
Query:       KIR61455.1  [L=116]
Description: 4-carboxymuconolactone decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-27   94.3   0.5    3.4e-27   94.3   0.5    1.6  2  CMD       Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.14   2.6e+03      69      79 ..       9      19 ..       1      24 [. 0.48
   2 !   94.3   0.5   1.9e-31   3.4e-27       2      84 ..      26     108 ..      25     109 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.14
                HHHSHHHHHHH CS
         CMD 69 ayagwpaaraA 79
                 +a +++a+aA
  KIR61455.1  9 GDAHVDRAVAA 19
                44444444444 PP

  == domain 2  score: 94.3 bits;  conditional E-value: 1.9e-31
                 HHHHHHHHHHHHHCC.GSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHHHH CS
         CMD   2 ellraltalrealla.reggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaaraAlaaae 84 
                 ++++++t++++++++ r+g Ld+++r++i+lav+a+++ ++++++H+raAl++G+t++ei evl q  +yag+paa++A+a+a+
  KIR61455.1  26 DFQDLITRYAWGEIWsRPG-LDRRTRSVITLAVLATLHHDEELAMHVRAALRNGLTPQEISEVLLQVGVYAGVPAANRAFAVAR 108
                 899************9988.*********************99***************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 882.92
//
Query:       KIR61456.1  [L=260]
Description: adhesin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-23   83.3   0.1      1e-21   77.8   0.1    2.1  1  Abhydrolase_1  alpha/beta hydrolase fold
    2.3e-16   61.1  25.4    3.4e-16   60.5  25.4    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
    7.6e-10   38.5   1.3    1.3e-08   34.5   0.7    2.4  2  Hydrolase_4    Serine aminopeptidase, S33
    0.00011   22.3   0.4     0.0011   19.1   0.1    2.1  2  Abhydrolase_4  TAP-like protein
     0.0013   18.5   0.3     0.0075   15.9   0.1    2.0  2  Esterase       Putative esterase
     0.0044   16.5   0.0        1.2    8.6   0.0    2.2  2  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.014   15.3   0.1      0.027   14.3   0.1    1.5  1  Ser_hydrolase  Serine hydrolase
      0.088   12.3   8.0      0.018   14.5   3.3    1.9  2  Esterase_phd   Esterase PHB depolymerase
       0.17   11.8   0.0        8.9    6.2   0.0    2.5  3  UPF0227        Uncharacterised protein family (UPF0227)


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.1   5.1e-25     1e-21       2     255 ..      17     239 ..      16     241 .. 0.86

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 5.1e-25
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyper 97 
                    vl++   l+ ++ +w       aL   +f+v+ +D++G+g+S  +p +    y++  + + + r+ld l+ +++++ G S+GGm+++++aa +per
     KIR61456.1  17 VLLLGSSLGTTAAMWEP--QLAALTA-HFRVVRYDHLGHGRSAVPPGP----YTIELLGREVLRLLDDLDARRVHYAGLSLGGMVGMWLAAHAPER 105
                    56666667778888888..7777877.*******************76....99999*************************************** PP

                    EEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHHH CS
  Abhydrolase_1  98 Vkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksieqwp 193
                    V +l+ll++        +a++  a  + d +  ++a + + +a   +a+  +  +   r          +  +++   +  s++a g + ++  ++
     KIR61456.1 106 VGRLALLCT--------SAALGPARMWHDRAAAVRAGGLPAVADAVVARWFTPGFAAAR--------PEAVAAWR--AMLTSTPADGYAACCAAIS 183
                    *********........666666666666666777777777777777777777777754........44555555..6899999999999999999 PP

                    HCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 194 ttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafle 255
                    t d +  l  +r       ptlv++gt+D+++p  + + +a+ +p++rl +++da Hla+ +
     KIR61456.1 184 TMDLRDDLTGIRA------PTLVVAGTDDQATPVPHARLIAERIPGARLAIVADAAHLANVQ 239
                    9999999999999......***************************************9977 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5  25.4   1.7e-19   3.4e-16       4     217 ..      19     244 ..       5     247 .. 0.70

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 1.7e-19
                    E--..GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-..GGCS--HHHC.HHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC...EE..E CS
  Abhydrolase_6   4 lHG..agssassWlvapLaallaagvhvlapDlpGhGrs..dpppldledl.adlaalldelaagggpvvlvGHSlGGalalaaapla.lvvg..v 91 
                    l G  +g++a +W  ++L a+l+a+++v+ +D  GhGrs  +p p++ e l +++++lld+l+  +++v+  G SlGG++++ +a++a  +vg   
     KIR61456.1  19 LLGssLGTTAAMWE-PQL-AALTAHFRVVRYDHLGHGRSavPPGPYTIELLgREVLRLLDDLD--ARRVHYAGLSLGGMVGMWLAAHApERVGrlA 110
                    3343366779***5.355.666777799*********99555555666664688899999995..******************8888886666798 PP

                    EES-..----TTTS----TTHHHHHHTT-C....CCCHCCHS-HSCCCCHHH.CCCCHCHCCCGHHHHCCHHC......HTTCCHHTT-TTGCEEE CS
  Abhydrolase_6  92 lldppptalpagllaaalelllallallrl....lawlsreplprlfladed.adaawrarlarlaallaglg......llpaaawadlpvpllvl 176
                    ll++    +pa++ +++++ ++a + ++++    ++w++     ++f a  + a aawra+l+  +a   +           +++++++++p+lv+
     KIR61456.1 111 LLCTSAALGPARMWHDRAAAVRAGGLPAVAdavvARWFT-----PGFAAARPeAVAAWRAMLTSTPADGYAACcaaistMDLRDDLTGIRAPTLVV 201
                    888833455555544444444444444444344467775.....6888855545888888888888555533322232222488**********99 PP

                    .CTT-C..HHHHCHHCCCH..STTEEETCE...SSS-HHHHSHHHH CS
  Abhydrolase_6 177 .ggeDp..lvprllerlla..qagarlpvvlpgaGHlphleepdev 217
                     g++D+   vp   +rl a  ++garl  ++++a Hl + ++p +v
     KIR61456.1 202 aGTDDQatPVP--HARLIAerIPGARL-AIVADAAHLANVQQPGQV 244
                    44666666444..335555788*****.********9999999887 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.069   1.4e+02      71      90 ..      10      29 ..       3      31 .. 0.82
   2 !   34.5   0.7   6.3e-12   1.3e-08      31     232 ..      41     234 ..      34     237 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.069
  Hydrolase_4 71 eehpelplfllGhSmGGlia 90
                 +  p++p+ llG S+G + a
   KIR61456.1 10 DGPPDAPVLLLGSSLGTTAA 29
                 567899**********9877 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 6.3e-12
  Hydrolase_4  31 GfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglils..aPalkikaklkappllkll 126
                   f v+ +Dh GhGrs+   g    ++ + + +  +++ + ++     +   G S+GG++ + ++++ p++v +l l   ++al+++ ++   +++++ 
   KIR61456.1  41 HFRVVRYDHLGHGRSAVPPG-PYTIELLGREVLRLLDDLDARR----VHYAGLSLGGMVGMWLAAHAPERVGRLALLctSAALGPARMW-HDRAAAVR 132
                  599************97777.6778999999999999988665....6669******************99966655005555555443.22233322 PP

  Hydrolase_4 127 lkllgkllpklqvsnnlkadslsrdpevvaayeadplvhgkitvrlllellda..mkrleeraakitlPllllhGeaDkvvdpeasrelyerlgskdk 222
                  +  l +++ +  v +   + +    pe vaa +a   +   + ++ ++ ++ a  +++l+++ + i++P+l++ G++D+ ++   +r ++er++    
   KIR61456.1 133 AGGL-PAVADAVVARWFTPGFAAARPEAVAAWRA---MLTSTPADGYAACCAAisTMDLRDDLTGIRAPTLVVAGTDDQATPVPHARLIAERIP--GA 224
                  2223.33334444566788999999999996654...666666666666666612567889999999**************************9..58 PP

  Hydrolase_4 223 tlklypglyH 232
                  +l++ + + H
   KIR61456.1 225 RLAIVADAAH 234
                  8888888888 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.2     4e+02      32      76 ..      12      55 ..       2      60 .. 0.73
   2 !   19.1   0.1   5.4e-07    0.0011      34      76 ..     195     237 ..     167     257 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.2
  Abhydrolase_4 32 kgaapvLllqnerDpaTPyegakklakalggavlvtvegeGHgal 76
                   + +apvLll++    +T   +  +la      ++v ++  GHg +
     KIR61456.1 12 PPDAPVLLLGSSL-GTTAAMWEPQLAALTAHFRVVRYDHLGHGRS 55
                   3369999999988.4677788888887777788999999999876 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 5.4e-07
  Abhydrolase_4  34 aapvLllqnerDpaTPyegakklakalggavlvtvegeGHgal 76 
                     ap+L+++++ D aTP   a+ +a++++ga+l +v ++ H a 
     KIR61456.1 195 RAPTLVVAGTDDQATPVPHARLIAERIPGARLAIVADAAHLAN 237
                    37******************************99999999765 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.23   4.6e+02     115     131 ..      14      31 ..       2      39 .. 0.78
   2 !   15.9   0.1   3.8e-06    0.0075     119     157 ..      85     124 ..      63     160 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.23
                 CC.EEEEEETHHHHHHHH CS
    Esterase 115 dg.ravaGqSmGGlgALi 131
                 d+   ++G+S+G ++A++
  KIR61456.1  14 DApVLLLGSSLGTTAAMW 31 
                 4457899*******9997 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 3.8e-06
                 EEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CC.....HCHH CS
    Esterase 119 vaGqSmGGlgALilalkhpdrFgsvssfSpivnps.....namW 157
                  aG S+GG++ ++la+++p+r g+ + +      s     + mW
  KIR61456.1  85 YAGLSLGGMVGMWLAAHAPERVGRLALLCT----SaalgpARMW 124
                 58*********************9988762....2223345566 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0038       7.5      61      87 ..      78     104 ..      68     109 .. 0.89
   2 !    8.6   0.0    0.0006       1.2     131     186 ..     182     234 ..     140     253 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0038
                   --GGGEEEEEETHHHHHHHHHHHH-GG CS
  Peptidase_S9  61 vdserlaitGgSyGGyltgaalnqrpd 87 
                    d++r+   G S GG++ +++++++p+
    KIR61456.1  78 LDARRVHYAGLSLGGMVGMWLAAHAPE 104
                   6999*****************999987 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0006
                   HHHH-CGGG--.---EEEEEEETT-SSS-THHHHHHHHHHH--S-S.EEEEEETTS-S CS
  Peptidase_S9 131 lspyspldnvk.aypplLlihGlaDdrvppaealklvaaLqkkgkn.vlllifpdegH 186
                   +s+++  d ++ + +p+L++ G+ D+ +p+ +a  ++++      + ++l i  d+ H
    KIR61456.1 182 ISTMDLRDDLTgIRAPTLVVAGTDDQATPVPHARLIAER-----IPgARLAIVADAAH 234
                   344444444448999****************98665554.....34456666666666 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   1.4e-05     0.027      84     154 ..     165     236 ..     139     246 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
                    EEEET--SGGS..TT.GGGCGCTTS-.SSHHCCHCEEEEETTBTTC-HHHHHHHHHHC.T-EEEEETT-TTSS CS
  Ser_hydrolase  84 alLVapadveeeaaklaelaefaplp.reklpfpslvvaSenDpyvsfeeaeelaeaw.gaelvdlgeaGHin 154
                    a+L + ++    aa+ a++ +++     +  + p+lvva ++D++ ++ +a+ +ae++ ga+l  +  a+H+ 
     KIR61456.1 165 AMLTSTPAD-GYAACCAAISTMDLRDdLTGIRAPTLVVAGTDDQATPVPHARLIAERIpGARLAIVADAAHLA 236
                    555544442.3455555555555433045567899*********************9989***********96 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   3.3   9.1e-06     0.018      93     163 ..      77     148 ..      61     160 .. 0.87
   2 ?    0.0   0.3      0.25     5e+02     150     186 ..     171     212 ..     149     240 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.1e-06
  Esterase_phd  93 rvdaarvyvaGlsaGaaladllalhypdvfaavalh.sGlalGeaadvisaldvmrrGlrqapaaavdalve 163
                    +da rv+ aGls G+ +   la h p++   +al  +  alG a        ++r G  +a a av a+  
    KIR61456.1  77 DLDARRVHYAGLSLGGMVGMWLAAHAPERVGRLALLcTSAALGPARMWHDRAAAVRAGGLPAVADAVVARWF 148
                   68******************************997615679*****9999999*****99999999988754 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.25
  Esterase_phd 150 lrqapaaavdalveagay...pgl..palvvqGdadtvvavk 186
                   + +  aa+  a ++        g+  p+lvv G  d++  v 
    KIR61456.1 171 PADGYAACCAAISTMDLRddlTGIraPTLVVAGTDDQATPVP 212
                   333334444444444332011332338888888777765554 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.049        98      50      78 ..       6      34 ..       1      45 [. 0.72
   2 ?    6.2   0.0    0.0045       8.9      46      79 ..      68     101 ..      46     130 .. 0.78
   3 ?   -1.9   0.0       1.4   2.8e+03     132     170 ..     193     234 ..     168     239 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.049
     UPF0227 50 eklvaelgddnillvGssLGGyyatrlge 78
                ++ v    d  +ll GssLG   a +  +
  KIR61456.1  6 HATVDGPPDAPVLLLGSSLGTTAAMWEPQ 34
                55555555555899******998888555 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0045
     UPF0227  46 lkeleklvaelgddnillvGssLGGyyatrlger 79 
                  +e+ +l+ +l ++++   G sLGG +  +l++ 
  KIR61456.1  68 GREVLRLLDDLDARRVHYAGLSLGGMVGMWLAAH 101
                 4678889999999999**************9975 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
     UPF0227 132 krperilvllskqDevldy...rravaefraaaeiveddgdH 170
                   + ++lv+++++D   ++   r  ++    a+  + +d  H
  KIR61456.1 193 GIRAPTLVVAGTDDQATPVphaRLIAERIPGARLAIVADAAH 234
                 556788999999999887755455566666677767666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1926.06
//
Query:       KIR61457.1  [L=455]
Description: 3-carboxy-cis,cis-muconate cycloisomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-32  112.7   0.0    3.2e-32  112.2   0.0    1.2  1  Lyase_1   Lyase
    1.9e-14   53.9   2.6      2e-13   50.7   0.1    3.4  4  ADSL_C    Adenylosuccinate lyase C-terminus


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   0.0   3.6e-36   3.2e-32      23     307 ..      34     302 ..      19     307 .. 0.85

  Alignments for each domain:
  == domain 1  score: 112.2 bits;  conditional E-value: 3.6e-36
                 GGHHHHHCHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTTHSSGIIIIITTT--HHHHHHHHHHH CS
     Lyase_1  23 rlseedikalaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellgekvepndkvhtgqSsnDqvpTalrl 121
                  l+     a+aal++a a  +v++  +a+ai + +++ l      d ++l  + e++g  v   + ++ +   + +  ++ +vh g++s+D+ +Tal l
  KIR61457.1  34 LLD-----AEAALAAAGADCGVLPRAAAEAIGACCRADLF-----DPAALGRAAEDAGNPVVPLVRQLTA---ALPEPARAWVHLGATSQDVLDTALML 119
                 444.....88999999999999998888888888887776.....7899999999999999997777777...34446788****************** PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEETTTTTTTSSTTTSCC.THHHHHH CS
     Lyase_1 122 alkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvellgggtavgtglnadp.efaelva 219
                 ++++a    Ll++l++ +da  + a +++d+v++ rT +q+A P+t+g + +++ + l + r+rl  ++   l  +lgg++++ ++l+ +   +a ++a
  KIR61457.1 120 VAARAA-GPLLAHLDRAADAAARLAAAHRDTVMLARTLGQQAAPTTFGLKAAGWLVGLAEARTRLDAVR-AALPAQLGGAVGTLAALGPAGpAVAARFA 216
                 ******.66************************************************************.9999999**99999999865426677777 PP

                 HHHHHHHCSTEESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSS.....C-TTSTTTEBTHHHHHHHHHH CS
     Lyase_1 220 kelakvtglpvkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesep.....GSSiMPgKvNPvqlElltgva 307
                 ++l+ ++    +  +++   + r  +++l++al  l +   k a D+ ll++ e+g+  +  a++ +     GSS MP+K+NPv++ l+  +a
  KIR61457.1 217 AHLG-LAA---SPLPWH---TRRQPLLDLAAALGGLLAAAGKTALDVGLLAQVEVGEAAEGGAATGAgpgrgGSSAMPHKRNPVDSVLVGAAA 302
                 7777.555...899999...99********************************999888777655445666************987766555 PP

>> ADSL_C  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.15   1.4e+03      40      67 ..      15      45 ..       6      47 .. 0.72
   2 ?   -0.9   0.2      0.29   2.6e+03      53      66 ..      31      44 ..      20      77 .. 0.59
   3 ?   -0.0   0.0      0.15   1.4e+03      35      71 ..     308     349 ..     297     351 .. 0.68
   4 !   50.7   0.1   2.2e-17     2e-13       1      73 []     371     443 ..     371     443 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.15
                HHT-HHHH.C..HHCHHHHHT-GGGCCTTHH CS
      ADSL_C 40 Laadpevk.k..seeeldalfdpayylgsad 67
                L  dp v  +  +++ l+al+d ++ l +a+
  KIR61457.1 15 LSGDPGVDaQlaDRALLRALLDAEAALAAAG 45
                5667777743666667899999998887765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.29
                HHHHT-GGGCCTTH CS
      ADSL_C 53 ldalfdpayylgsa 66
                l+al+d ++ l +a
  KIR61457.1 31 LRALLDAEAALAAA 44
                34444444433333 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.15
                 C....HHHHHHT-HHHH.CHHCHHHHHT-GGGCCTTHHHHHH CS
      ADSL_C  35 e....llelLaadpevk.kseeeldalfdpayylgsadeivd 71 
                      ++++++++++ + + ++e + l+d+ +  g a + ++
  KIR61457.1 308 LvatlYAAAVQEHERAAgAWHAEWEPLLDLLHLAGGAAARTA 349
                 055567788888888886644489999998887777776665 PP

  == domain 4  score: 50.7 bits;  conditional E-value: 2.2e-17
                 TGGGHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHCHHHHHHT-HHHH.C.HHCHHHHHT-GGGCCTTHHHHHHHH CS
      ADSL_C   1 GlifservllaLvkglgReeAyelVqeaamkaweellelLaadpevk.k.seeeldalfdpayylgsadeivdrv 73 
                 Gl+++e+v  +L+++lgR  A+++V++aa+     ++++L+adpev+ +  + e+d+++dp   lgsa+ +vdr+
  KIR61457.1 371 GLVLAEAVAARLTPALGRGAAHDVVARAAAGPD--FRAALLADPEVRaHlGPREIDEALDPYGWLGSAGLLVDRA 443
                 9***************************97666..************76*777********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2986.00
//
Query:       KIR61458.1  [L=190]
Description: protocatechuate 3,4-dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-18   64.7   0.0    4.2e-17   62.2   0.0    1.9  1  Dioxygenase_C    Dioxygenase
  ------ inclusion threshold ------
      0.076   13.3   0.3       0.56   10.5   0.3    2.3  1  CarboxypepD_reg  Carboxypeptidase regulatory-like domain


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   4.7e-21   4.2e-17      30     181 ..      38     180 ..      30     181 .. 0.80

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 4.7e-21
                    EEEEEEEE-TTSSB-TT-EEEEE---TTS--TTS-TTS-SS...TTTTE..EEEE--TTSEEEEEEE----EE--TTSHHHHHHHHTT---EE-SE CS
  Dioxygenase_C  30 lvlsGrvldeaGkplagalvelWhanaeGrYshkkeeheap...elnlr..griltdeeGryrirtikPapYpipndGptgklldalgrhawRPaH 120
                    + ++Gr++d aG p+++alve W+a+ +Gr++h ++   a       +r  gr  td++G y + t++P++ p p+ G t               H
     KIR61458.1  38 FWVRGRITDGAGAPVVDALVESWQADPDGRFDHPDDPRGARassVAGFRgfGRSETDDQGWYALLTVRPGALPAPD-GGT------------EAPH 120
                    5799*****************************9886555412233455889**********************99.433............346* PP

                    EEEEEE-TTB.--EEEEEEETT-TTTT..S-TT----TTTEE--EEE-SHS-.EEEEE--EE-- CS
  Dioxygenase_C 121 iHfsvsapgh.rklvTqlyfegdkyla..ddivsaakeeLiaeleesedeeekalelefdlvLd 181
                    + +sv++ g  +++vT+lyf+ ++  +  d+++ ++  +   +l  +e++     +++fd++L+
     KIR61458.1 121 LNLSVFGRGLlHRVVTRLYFPDEPAANaaDPVLRGVDADRRGTLVGRESA----DGVRFDIRLQ 180
                    *********99************988767999999766555555444444....4578888876 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   6.2e-05      0.56       2      48 ..      40     107 ..      39     110 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.2e-05
  CarboxypepD_reg   2 isGrVtdasgapiagatVtvtnadtg.....................tvastttdadGafrlrglppg 48 
                      ++Gr+td  gap+  a V+  +ad +                        +  td++G ++l  + pg
       KIR61458.1  40 VRGRITDGAGAPVVDALVESWQADPDgrfdhpddprgarassvagfrGFGRSETDDQGWYALLTVRPG 107
                      79****************97655433367777777777777666654457778888888888777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       168  (0.00937029); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1379.01
//
Query:       KIR61459.1  [L=243]
Description: protocatechuate 3,4-dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-54  184.4   0.0    1.6e-54  184.1   0.0    1.1  1  Dioxygenase_C    Dioxygenase
    7.1e-16   57.5   6.7    1.7e-15   56.3   6.7    1.7  1  PCDO_beta_N      Protocatechuate 3,4-dioxygenase beta subunit
    2.7e-06   27.5   0.0    6.8e-06   26.3   0.0    1.6  1  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
  ------ inclusion threshold ------
       0.08   13.3   0.0       0.12   12.7   0.0    1.2  1  DUF4198          Domain of unknown function (DUF4198)


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.1   0.0   3.5e-58   1.6e-54       1     182 []      49     230 ..      49     230 .. 0.97

  Alignments for each domain:
  == domain 1  score: 184.1 bits;  conditional E-value: 3.5e-58
                    ---S--EET..--EEESEEE---S--TT--EEEEEEEEE-TTSSB-TT-EEEEE---TTS--TTS-TTS-SS.TTTTE..EEEE--TTSEEEEEEE CS
  Dioxygenase_C   1 iegPlyvee..apededlarledkgeeegerlvlsGrvldeaGkplagalvelWhanaeGrYshkkeeheap.elnlr..griltdeeGryrirti 91 
                    ++gPl +e+  +p d+dl+r++d ge+ g+r++++Grv d +G+p++ +lve+W+ana+GrY+h  ++  ap ++ +   gr+ tde Gryr+ t+
     KIR61459.1  49 VTGPLLGEGrlGPLDHDLTRQHD-GEPLGQRIIVHGRVHDGDGRPVPHTLVEIWQANAAGRYRHAVDNWAAPlDPHFDgvGRVRTDERGRYRFVTV 143
                    68999999989************.*************************************************99998889*************** PP

                    ----EE--TTSHHHHHHHHTT---EE-SEEEEEEE-TTB.--EEEEEEETT-TTTT.S-TT--.....--TTTEE--EEE-SHS-.EEEEE--EE- CS
  Dioxygenase_C  92 kPapYpipndGptgklldalgrhawRPaHiHfsvsapgh.rklvTqlyfegdkyla.ddivsa.....akeeLiaeleesedeeekalelefdlvL 180
                    +P++Yp++n           + +awRPaHiHfs+++ ++ ++lvTq+yf+gd+++  d+++++     a+++Lia++++ ++ +e al++efd+vL
     KIR61459.1 144 QPGAYPWRN-----------HDNAWRPAHIHFSLFGRAFtQRLVTQMYFPGDPLFFqDPVLNSipdpaARQRLIARYDHATTRPEWALAYEFDIVL 228
                    *********...........*******************9*************998799**999***9**************************** PP

                    -B CS
  Dioxygenase_C 181 dg 182
                    +g
     KIR61459.1 229 RG 230
                    85 PP

>> PCDO_beta_N  Protocatechuate 3,4-dioxygenase beta subunit N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   6.7   3.7e-19   1.7e-15       1      34 []      11      45 ..      11      45 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 3.7e-19
  PCDO_beta_N  1 yprdr.asHPpalyPpYkSSvLRaPkqpLislpqt 34
                 y+rd+ ++HPp+l+P+Y+S+vLRaP+qpL+ lpq+
   KIR61459.1 11 YRRDDvDAHPPLLSPGYRSTVLRAPSQPLVYLPQR 45
                 89*******************************96 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.5e-09   6.8e-06       2      51 ..      81     149 ..      80     155 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.5e-09
  CarboxypepD_reg   2 isGrVtdasgapiagatVtvtnadtg...................tvastttdadGafrlrglppgtys 51 
                      ++GrV d +g+p+++  V++ +a+                      v +++td+ G++r+  ++pg y 
       KIR61459.1  81 VHGRVHDGDGRPVPHTLVEIWQANAAgryrhavdnwaapldphfdGVGRVRTDERGRYRFVTVQPGAYP 149
                      79*****************986433248999999999999998888*********************95 PP

>> DUF4198  Domain of unknown function (DUF4198)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.7e-05      0.12     160     205 ..      89     148 ..      78     149 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.7e-05
     DUF4198 160 dGkPlagaeveveyggt..ryrdapdeikv............ktdadGvvtftlpkaGlw 205
                 dG+P++++ ve++ +++  ryr+a d   +            +td+ G+  f   ++G +
  KIR61459.1  89 DGRPVPHTLVEIWQANAagRYRHAVDNWAApldphfdgvgrvRTDERGRYRFVTVQPGAY 148
                 9******************99999998666665656777778999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1694.47
//
Query:       KIR61460.1  [L=511]
Description: hypothetical protein TK50_27960 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-88  296.2   0.7    3.2e-87  293.4   0.7    1.8  1  G_glu_transpept  Gamma-glutamyltranspeptidase


Domain annotation for each model (and alignments):
>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.4   0.7   1.8e-91   3.2e-87       5     512 .]      21     497 ..      17     497 .. 0.92

  Alignments for each domain:
  == domain 1  score: 293.4 bits;  conditional E-value: 1.8e-91
                      HTT--HHHHHHHHHHHHHHHSTTT-STTSEEEEEEEETTSCEEEEEEE--BB-TT--TTTTTSCBCCHHHHSSGGG-BB--HHHHHHHHHHHH- CS
  G_glu_transpept   5 rkGGnAvDAavAaalclgvvepqssGiGGGgfllvydaktkkvealdaretAPaaatkdmfdkegdsklsktgalavgVPGevagleeahkkyG 98 
                       +GGnA DAa Aaa +l+vv+p+ + +GG+++++v++ +++++ a+ a +tAP+ +++        + ++ +ga++v+VPG vag+ e+ +  +
       KIR61460.1  21 AAGGNALDAALAAACMLTVVYPHQCALGGDLIAVVRSPEGETT-AVVAAGTAPRGIDRPAT---RWRTMPGQGAHSVTVPGVVAGWLELARLGA 110
                      68*************************************9988.899***********999...78889********************99888 PP

                      SS-HHHHHHHHHHHHHH-EE--HHHHHHHHHCHHHHHTSHHHHHHHEETTSE--TTSEE--HHHHHHHHHHHHHTTHHHHSSHHHHHHHHHHHH CS
  G_glu_transpept  99 klpwadllepaiklareGfpvsealaralaeaeerlkkdpelaklFlpegevlkagellkqpalAktLerlaeeGaeaFYkGelAeklvaelqk 192
                       lp+a  l  a+++a+ G +vs  l+ral+++++ + +dp+l+++F+p g++l++g++++qpalA+tL+rla + ++ +Y+Ge+A+++v+ l  
       KIR61460.1 111 LLPLAAPLREAAAVAEAGTRVSAGLERALDSRRDTVLADPGLRSVFAPGGRPLRQGATVRQPALAATLRRLAAD-PRDLYEGETARAIVRLLGS 203
                      ************************************************************************87.5679*************** PP

                      TT-S--HHHHHH---EEES-EEEEETTCEEEEE-TTCSHHHHHHHHHHHHCTTTGGGCTTTCHHHHHHHHHHHHHHHHHHHHH-SSTTTSSSGH CS
  G_glu_transpept 193 agGiltaeDLanykvevreplsadyrggytvyepppssggivllqiLnilegfdlkslssnsaetlhllvEamklayadRsrylgDpdfvknpt 286
                       gG+ t++D+a y+++  ++++ ++  g+t + +pp+s g+vll +   +   d        a    +l++a    +a+R+ +lgDp+   +  
       KIR61460.1 204 LGGAHTLADFAGYRPQTGPAVTREI-AGRTWSVAPPPSVGAVLLGVAAAVADGD-------GAPDPARLLDASLAGVAARAGFLGDPRTGGA-- 287
                      *************************.7888888888888888887777777777.......3777889*******************99973.. PP

                      CHHHHHT-HHHHHHHHTT.BTTB..SGGGCSCGGCSCG.TTEEEEEEEEETTS-EEEEEEEESSTTTTSEBETTTTEBE--GGGGSBSTS..TT CS
  G_glu_transpept 287 elveellskeyakeraklIkdkaatpsseyykaaeaaeesggTthlsvvDregnaVSltstinllFGsgvvvpgtGilLnnemddfstgvenaf 380
                        +  ll  +  +                  ++ ++++ +g+T+ +   D+ g  VSl+++++++FG+g++ p+tG++L+n+++ fs       
       KIR61460.1 288 -DLAALLRLDAPAA----------------AAGPAEPPAHGDTVAVVASDDAGWSVSLVQSVYQTFGAGLLEPETGVVLHNRGSAFS------- 357
                      .3555655533222................1223445669***********************************************....... PP

                      SCSTTSTTB--TT----B----EEEEETTEEEEEEEEESGGGHHHHHHHHHHHHHTT-S-HHHHHHS--EEE.....SSSSTEEEESTTS.HHH CS
  G_glu_transpept 381 gldpspanaiePgkRplssmaPtivlkdgkpvlvlGaaGGsriisavlqvlvnvldlgldlqeavdaprihh.....qllpdkvevEegfseev 469
                       ldp+ + ++ Pg Rp ++++P+iv +  +  +v G +GG  ++ + +q++  + dl  +l e++++pr++           ++  E+g+++ v
       KIR61460.1 358 -LDPASPARLVPGARPPHTLCPVIVHS-AEATVVAGCQGGRAQPWILAQLVPATTDLARPLDEVLARPRWVVgdvdlGHADLTLVAEPGVDDRV 449
                      .************************99.6677899*************************************88765334449*********** PP

                      HHHHHHTTSEEEESSSTCCCEEEEEEEE.....TTTEEEEEE-TTTTT CS
  G_glu_transpept 470 veeLearGhkvkevedsssvvaavavak.....ekgvleaasDprkdg 512
                      v++ +a G  v + +    +  +v+v++     +++ l+aasDpr dg
       KIR61460.1 450 VDAARAAGLPVAWFPGRADAAGHVQVVRsragrDGAALQAASDPRADG 497
                      ***************999999999998899999999*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3775.61
//
Query:       KIR61461.1  [L=339]
Description: hypothetical protein TK50_27965 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-59  200.9   0.0    4.2e-59  200.4   0.0    1.2  1  PTE       Phosphotriesterase family


Domain annotation for each model (and alignments):
>> PTE  Phosphotriesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.4   0.0   2.3e-63   4.2e-59       2     297 ..      11     336 ..      10     337 .. 0.93

  Alignments for each domain:
  == domain 1  score: 200.4 bits;  conditional E-value: 2.3e-63
                 EGGCTSCEEEEE-SCEE-HHHHCHCCCCC--HHH.......................HHHHHHHHHHHHHHTTEEEEEE---CCCT--HHHHHHHHCCH CS
         PTE   2 etsdlGvtLahehltitldefkqnvpealevedk.......................evaaiieellelkarGvdalveltttglgRdvqtlkrvaeet 77 
                  +++lG t +hehl  +l    +++ e   v                          +   + eel +++a G+ a+velt  g+gR v  l ++a++ 
  KIR61461.1  11 APEQLGPTSMHEHLLSDLRIWSKPPRELPPVGVPmgpqlasylrwnalsleenlilhDPDVAAEELAHVRAAGGSAVVELTLEGMGRRVGDLPEIARRA 109
                 689**************998888887766655547899******************9666778************************************ PP

                 SSEEEEEECB--CCG--TCCCCS-CHCHHHHHHHHHHT-STTTS--EEEEEEEE-CTBS-HHHHHHHHHHHHHHHHH---EEEEEGCCTTCHHHHHHHH CS
         PTE  78 gvnivaatGfYvdatvpeaararsveeltdvlvdeiehGidgteikaGiikeigtsgkltpseekvleavaqahkqtGaPisihtsaslragleqlril 176
                 gv++ +++GfYv+ t+p+++ra +v+elt+ lv ++ +Gi +t+i+  +++eigts+++t++e ++++a+ +a ++tGa + +h s+    g+ +l+ l
  KIR61461.1 110 GVHVCVGSGFYVEETMPAHVRAAGVDELTELLVAQLTDGIGDTGIRPALLGEIGTSWPITDAEWRMVRAAGRAGARTGAAVYMHLSFRGAGGVPVLAAL 208
                 *****************************************************************************************9********* PP

                 HHTT--GGGEEETTGGCS--HHHHHHHHHTT-EEEE--TT-TT........TS-HHHHHHHHHHHHHTT-GGGEEE-----SEECCCSCCCCCHHTTHH CS
         PTE 177 qeeGvDlsrvvvghldtktdvkellelidlGaYleyDlfgvdl........ispdekRirivhalvdrGyedrillshDittkfralkkelvgyaydll 267
                  eeG+   rvv+ghld+  d ++  e++++Ga l yD+fg d          + d +R+ +v  l  +G+  ++++  D+ t+ ++ +++  g +yd+l
  KIR61461.1 209 LEEGMPADRVVIGHLDERWDRGYHREIAQAGAVLAYDTFGSDFyygtpalrNPTDAERLDMVGWLLSEGFGGQLVIGADVWTQANLRRNG--GNGYDHL 305
                 ***************************************9999888888877899***************************65555555..5555556 PP

                 HHTHHHHHH.HTT--HHHHHHHHTHHHHHHH CS
         PTE 268 ltdviPklk.qrGlteeqldkiLvenPkqil 297
                 +  + P++  + G    ++d+iLv nP+++l
  KIR61461.1 306 FRRIGPAIAdLAGGDPTVVDTILVGNPRRLL 336
                 6******9637899999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2433.81
//
Query:       KIR61462.1  [L=426]
Description: hypothetical protein TK50_27970 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-38  132.9  74.5    1.4e-26   93.3  39.5    2.0  2  MFS_1         Major Facilitator Superfamily
    3.7e-10   39.2  21.7      2e-06   27.0   9.3    2.2  2  MFS_1_like    MFS_1 like family
    7.1e-06   25.2  12.0    7.1e-06   25.2  12.0    2.4  2  Sugar_tr      Sugar (and other) transporter
  ------ inclusion threshold ------
      0.052   12.9   0.3      0.052   12.9   0.3    2.3  3  DUF4191       Domain of unknown function (DUF4191)
       0.44    8.9  52.2        1.1    7.6  31.7    2.4  2  MFS_3         Transmembrane secretion effector
       0.98    9.6   7.9         11    6.2   0.5    3.1  2  Metal_resist  Heavy-metal resistance
        6.1    5.0  11.8        4.5    5.4   3.2    2.8  3  OATP          Organic Anion Transporter Polypeptide (OATP) fa


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3  39.5   5.6e-30   1.4e-26       1     287 [.      24     298 ..      24     300 .. 0.85
   2 !   53.5  26.9   6.8e-18   1.7e-14      34     187 ..     257     410 ..     251     420 .. 0.93

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 5.6e-30
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l+ a  l a++ s+ +p++p ++ + lg ++s  g l++l a++++va++++G l+dr G r v l+g  + alg+lll+ ++slw    +r+l Glg 
  KIR61462.1  24 LFAASTLGAMTNSASTPIIPGYVERVLGGDASLSGVLISLSAVASMVAMPVAGLLGDRRGYRAVALAGGGTAALGMLLLAAVPSLWGAGPARLLFGLGN 122
                 578889999***********9******************************************************6666634****999********** PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                 +a++++++a++++++p  +rgra++++++++ lG ++gp +g ++ +++g  +vf ++a++ +  +v   l+ + ++p+r++++p+ ++   ++a   +
  KIR61462.1 123 AAAMTLVMAWLVALAPTGQRGRALSVFGLSVWLGLAVGPQVGVAVNQAVGPAGVFALCAALEVATVV---LVAWLPRPARPPEAPRSRR---AGAVRGS 215
                 ****************************************************************988...4445555555555444441...2344444 PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagrlsdrlgrrrrlllalllllla 287
                  ++a++ + v+  + +a+++ +    ++l +l +   + +g +  g+  a+ ++a++++ ++++++ ++ l dr+g+ r++ ++l +l+++
  KIR61462.1 216 -FRAVWVPGVV--AAAAWCGEG----LMLGFLLVH-LQARGVPagGVTGAASVFAVFSVSVIGARIALAGLPDRIGPVRATAVSLCALAAG 298
                 .7777777744..444444444....444444443.67788888879999999************************99999999999887 PP

  == domain 2  score: 53.5 bits;  conditional E-value: 6.8e-18
       MFS_1  34 igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfsl 132
                 +  +++++++  + a + l+ l dr+G+ r   ++l ++a+gl+ + +a+++w+ +++ vl G+g + l+p+   l+a+   + ++++++gl+s++++l
  KIR61462.1 257 AASVFAVFSVSVIGARIALAGLPDRIGPVRATAVSLCALAAGLTTMGLAPNFWVAAAAQVLIGIGFSPLYPSLTMLAARGLDGANQALGLGLFSSFTGL 355
                 6779**************************************5555568************************************************** PP

       MFS_1 133 GailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                 G++ g+l+ggl++++++  ++f+++a++ + a+v+++++ +e pp+r+  +p + 
  KIR61462.1 356 GYAGGALVGGLVIAAASTGWAFLLVAALQVAALVVVAVFAREAPPDRPGAAPGRP 410
                 ***********************************************99988776 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   5.4   4.9e-07    0.0013     228     378 ..      22     172 ..       8     179 .. 0.87
   2 !   27.0   9.3   7.6e-10     2e-06     241     384 ..     233     378 ..     164     379 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.9e-07
  MFS_1_like 228 iifllvalilgmswgiienFlflYL.kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgi 325
                 ++++++ ++  m++++    +  Y    lg   +l G+l+ l +va+++   +a  l ++ G + + +++  + +l  ll+a++ ++w + p+ +L g+
  KIR61462.1  22 WLLFAASTLGAMTNSASTPIIPGYVeRVLGGDASLSGVLISLSAVASMVAMPVAGLLGDRRGYRAVALAGGGTAALGMLLLAAVPSLWGAGPARLLFGL 120
                 56677777777788888888888886678999******************************************************************* PP

  MFS_1_like 326 sfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlks 378
                   ++    ++ +   +ap + +++  +++   ++ lG a+G  +G ++ +  +
  KIR61462.1 121 GNAAAMTLVMAWLVALAPTGQRGRALSVFGL-SVWLGLAVGPQVGVAVNQAVG 172
                 ***************************9965.566999999888855555555 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 7.6e-10
  MFS_1_like 241 wgiienFlflYLkelgasn.tllGsl..valgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaave 336
                  g++  Fl ++L+  g +   + G++   a+  v+ i   +    l +++G v+   ++l a ++ +  +++  n+w++  ++vL gi f  l+ +++ 
  KIR61462.1 233 EGLMLGFLLVHLQARGVPAgGVTGAAsvFAVFSVSVIGARIALAGLPDRIGPVRATAVSLCALAAGLTTMGLAPNFWVAAAAQVLIGIGFSPLYPSLTM 331
                 578888999999999987525666551145556788999999999****************************************************** PP

  MFS_1_like 337 yvskiapksleatgqgllsglyfglGralGsliGGllwdlksaiflFr 384
                  +++      +a g gl+s++  glG a G+l+GGl++   s+ ++F 
  KIR61462.1 332 LAARGLDGANQALGLGLFSSF-TGLGYAGGALVGGLVIAAASTGWAFL 378
                 ********************9.8***************9999999996 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2  12.0   2.8e-09   7.1e-06      44     192 ..      53     195 ..      18     199 .. 0.89
   2 ?   -2.1  15.0       0.5   1.3e+03      56     195 ..     265     399 ..     214     400 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 2.8e-09
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                  ++lsg++ s+  v +++   +agllgdr G++ + l+++  +  g +l aa +   s++    +R+l G+g  +a +lv  ++  +Ap+  Rg+  s+
  KIR61462.1  53 DASLSGVLISLSAVASMVAMPVAGLLGDRRGYRAVALAGGGTAALGMLLLAAVP---SLWGAGPARLLFGLGNAAAMTLVMAWLVALAPTGQRGRALSV 148
                 5689**************************************************...99**99************************************ PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS- CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflP 192
                 + l++ +G  v+  +g+++n+  +       ++l++++ ++ ++l+ +lP
  KIR61462.1 149 FGLSVWLGLAVGPQVGVAVNQAVG---PAGVFALCAALEVATVVLVAWLP 195
                 *******************88777...56789999999998888888888 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.5
                 HHHHHHHH.HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHH...TTS-SCCH.HHHHHHHHHHHHH CS
    Sugar_tr  56 lvGaiiGs.lfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyis...EiApkklR.galvslyqlaitf 149
                 + +++iG+ + +  l dr+G   + +++   + +g   +++a+   +++v ++++vl+Gig    +   +m+++     A ++l  g + s++ l+++ 
  KIR61462.1 265 S-VSVIGArIALAGLPDRIGPVRATAVSLCALAAGLTTMGLAP---NFWVAAAAQVLIGIGFSPLYPSLTMLAArglDGANQALGlGLFSSFTGLGYAG 359
                 3.333444133344679999999999999999999999*****...**************************993333577777777777777777777 PP

                 HHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---H CS
    Sugar_tr 150 GilvaaifglglnktsnadgwrillglqlvpallllilllflPESP 195
                 G lv+  +   ++  s  +gw +ll  +l  a +l+++ +f++E P
  KIR61462.1 360 GALVGGLV---IAAAS--TGWAFLLVAALQVA-ALVVVAVFAREAP 399
                 77777443...33333..48999999999999.7788888888877 PP

>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   1.6       2.5   6.4e+03      62      69 ..     126     133 ..      80     177 .. 0.59
   2 ?   -4.0   2.6       3.1   7.8e+03      39      69 ..     159     190 ..     123     199 .. 0.53
   3 ?   12.9   0.3     2e-05     0.052      37      89 ..     362     414 ..     351     420 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.5
     DUF4191  62 llvalivl 69 
                 +++++ +l
  KIR61462.1 126 MTLVMAWL 133
                 33333332 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 3.1
     DUF4191  39 vfvvlglllgs.lilllilgillgllvalivl 69 
                 v+  +g+++++ +    +++++++l va++vl
  KIR61462.1 159 VGPQVGVAVNQaVGPAGVFALCAALEVATVVL 190
                 33333333322122233333333333333333 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 2e-05
     DUF4191  37 vvvfvvlglllgslilllilgillgllvalivltrraekaayaqiegqpGaaa 89 
                 +v ++v+  + +++ +ll+ ++ +++lv++ v++r a       + g+pGaa 
  KIR61462.1 362 LVGGLVIAAASTGWAFLLVAALQVAALVVVAVFAREAPPDRPGAAPGRPGAAP 414
                 34445555555679*************************************95 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  13.8    0.0023       5.9     230     349 ..      31     150 ..      21     157 .. 0.89
   2 ?    7.6  31.7   0.00041       1.1     152     392 ..     157     393 ..     150     399 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0023
       MFS_3 230 FglsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalasslwvavlvlllgGaaWitalstl 328
                   ++ sa   ++P  + + l+gda+  G+l++   v  +++  +   L +r +  ++ l    + Al +l la ++slw a ++ ll G +  +a++ +
  KIR61462.1  31 GAMTNSASTPIIPGYVERVLGGDASLSGVLISLSAVASMVAMPVAGLLGDRRGYRAVALAGGGTAALGMLLLAAVPSLWGAGPARLLFGLGNAAAMTLV 129
                 456778888999999****************9888888888888899999999888888888899999******************************* PP

       MFS_3 329 nvavqlavPrWvvgRalavYl 349
                  +   ++ P   +gRal+v+ 
  KIR61462.1 130 MAWLVALAPTGQRGRALSVFG 150
                 *******************85 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00041
       MFS_3 152 RsvGPAlgGvlvaavGaalafavnalsylalivallrwkrevrksslprEkllealraglRftaasreikavlvRaalFglsasavlaLLPlvardqld 250
                  +vGP +g  +  avG+a +fa+ a   +a +v +++  r +r+ + pr +  +a+r ++R +     +  v++ aa  g      + L+ l ar   +
  KIR61462.1 157 LAVGPQVGVAVNQAVGPAGVFALCAALEVATVVLVAWLPRPARPPEAPRSRRAGAVRGSFRAVW----VPGVVAAAAWCGEGLMLGFLLVHLQARGVPA 251
                 589********************************************************99775....5567777888888888889999********* PP

       MFS_3 251 gdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalasslwvavlvlllgGaaWitalstlnvavqlavPrWvvgRalavYl 349
                 g+ +    +++ + v  i++ + l+ L +r++  r ++++  alA+ l +++la++ wva+ + +l G ++   + +l   +   +    ++ +l ++ 
  KIR61462.1 252 GGVTGAASVFAVFSVSVIGARIALAGLPDRIGPVRATAVSLCALAAGLTTMGLAPNFWVAAAAQVLIGIGFSPLYPSLTMLAARGLDGANQALGLGLFS 350
                 *********************************************************************999999999988888888888999999999 PP

       MFS_3 350 tvlaGglaaGsllWGavaealsvtlaLlaaaaalllaaailll 392
                   +  g a G+l+ G v  a+s  +a l+ aa+ ++a +++ +
  KIR61462.1 351 SFTGLGYAGGALVGGLVIAAASTGWAFLLVAALQVAALVVVAV 393
                 99999********************988777665555554443 PP

>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.5    0.0042        11       3      33 ..     179     210 ..     177     219 .. 0.84
   2 ?    5.5   1.7     0.007        18       2      37 ..     378     414 ..     377     422 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0042
                   .XXXXXXXXXXXXXXXXXXXXXXXTTHHBH.. CS
  Metal_resist   3 LalNlfllGalvgaalrgpggpppggparg.r 33 
                   L+++l +++++ +a+l +p++pp+++++r+ +
    KIR61462.1 179 LCAALEVATVVLVAWLPRPARPPEAPRSRRaG 210
                   8999999*******************999841 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.007
                   ..XXXXXXXXXXXXXXXXXXXXXXXTTHHBH..HHHH CS
  Metal_resist   2 sLalNlfllGalvgaalrgpggpppggparg.raell 37 
                   +L+++l +++++v+a +++ ++p + g+a g +++ +
    KIR61462.1 378 LLVAALQVAALVVVAVFAREAPPDRPGAAPGrPGAAP 414
                   5889999999999999999999998888766444444 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2    0.0038       9.7       9      84 ..      28     103 ..      20     112 .. 0.74
   2 ?   -1.1   0.1      0.17   4.3e+02     138     191 ..     114     167 ..     112     171 .. 0.89
   3 ?    5.4   3.2    0.0018       4.5     133     192 ..     309     368 ..     286     374 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0038
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
        OATP   9 lglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggr.ghrPrwigigallmalgsllla 84 
                  +l  ++ s+ + ++   +E+  + + s sg++ s++ +++++++ + + +g+r g r+  ++ g  + alg+llla
  KIR61462.1  28 STLGAMTNSASTPIIPGYVERVLGGDASLSGVLISLSAVASMVAMPVAGLLGDRrGYRAVALAGGG-TAALGMLLLA 103
                 344445556666666778899999999*************************99567777776555.6677777765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.17
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 138 aqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGsll 191
                 a ll G+G+++ +tl ++++   + + +    l+++     lG a+G  +G ++
  KIR61462.1 114 ARLLFGLGNAAAMTLVMAWLVALAPTGQRGRALSVFGLSVWLGLAVGPQVGVAV 167
                 67999****************999999999999999999999999998888766 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0018
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 133 llfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslll 192
                  +  +aq+l+GiG +p+y+  +       +  n +l lg++++++ lG+a G l+G+l++
  KIR61462.1 309 WVAAAAQVLIGIGFSPLYPSLTMLAARGLDGANQALGLGLFSSFTGLGYAGGALVGGLVI 368
                 37899**************9999999999***************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.39
# Mc/sec: 3244.88
//
Query:       KIR61463.1  [L=166]
Description: hypothetical protein TK50_27975 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-13   50.0   0.0    3.9e-13   49.8   0.0    1.1  1  YjgF_endoribonc  YjgF/chorismate_mutase-like, putative endori


Domain annotation for each model (and alignments):
>> YjgF_endoribonc  YjgF/chorismate_mutase-like, putative endoribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   2.2e-17   3.9e-13       1     128 [.       5     139 ..       5     151 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 2.2e-17
                      HHHHHHTT--------.....-SSSS-SEEEETTEEEE--B--EE.TTEE--BS-BTTTB-HHHHHHHHHHHHHHHHHHHHHHHSSGGG-SEEE CS
  YjgF_endoribonc   1 esrlvalGlelpkvaa.....alGayepyaivasflttsfqlpyl.qekllyvGllGddvsvseGiaaarlaalnalaqlkeaaGelarvkrli 88 
                      e r+  lGle+p+ a        G  +p+ ++++ l  s+  p +  ++ l+ G +G dv+v +G+ aarl+a+ +l  ++ a G+l +v  l 
       KIR61463.1   5 EQRVRELGLEIPDYADppygrRYGRLKPFHRIGDLLELSGLTPENrAGERLHPGVVGVDVTVAQGYQAARLTAIHTLGMIRLALGSLDNVVGLS 98 
                      56788899999987642222257999*****************76257889******************************************* PP

                      EEEEEE-B-TT---HHHHHHHHHHHHHHHHG.GGG--EEEE CS
  YjgF_endoribonc  89 rleGvlnvtqdyiempkvldaasdlllevlG.eaGrharti 128
                      r    +++   ++    v ++a+dl+ ev+G e G   r  
       KIR61463.1  99 RALCFVACPPGFEPLHEVSNGATDLFVEVFGdEIGSVGRAS 139
                      ******************************94456666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1202.26
//
Query:       KIR61464.1  [L=253]
Description: permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-35  122.0  42.6    3.2e-35  121.9  42.6    1.0  1  TauE             Sulfite exporter TauE/SafE
  ------ inclusion threshold ------
      0.052   13.8   2.3      0.052   13.8   2.3    2.5  3  BacteriocIIc_cy  Bacteriocin class IIc cyclic gassericin A-li


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9  42.6   3.6e-39   3.2e-35       1     234 [.       9     246 ..       8     248 .. 0.91

  Alignments for each domain:
  == domain 1  score: 121.9 bits;  conditional E-value: 3.6e-39
        TauE   1 lllagllaGfvagllGiGggliavPlLll.llppavavatsllavvatslsgalahrrrgnvdwrlllllllgsliGallGallllllpsellkllfgv 98 
                 lllagl++G+v++++G Gg+l+++P+Ll  +lpp+ a++t++lav++++ +++l  r   +++ r++++ ++ +++Gal G++lll++p +++ +++++
  KIR61464.1   9 LLLAGLAGGIVNAVAG-GGSLVTFPALLGiGLPPVSANVTNALAVAPGYGASVLGSRADLAGQGRRIRRAVPTAVLGALCGTVLLLVTPRAVFDVVVPF 106
                 5899**999*******.***********9569**************************999************************************** PP

        TauE  99 lllllallmllrkkr.....srak.grerrptaillvligglvGllsGllGiGgGfllvpllllllglplkkavatslllilvislagalgyalagavd 191
                 l+l + +l++++ +      + ++ +++rr +a+ l l+ +++Gl++G++ +  G ll++ l l+l  +l+++ a++++l+++++++++l+y ++g v+
  KIR61464.1 107 LVLGATALLAFQGRVraiagQ-PRaHSPRRAGAA-LHLAVFGCGLYGGYFNAALGLLLIAGLALVLDDSLRRVSALKNVLSATVGVVTILVYGAFGPVN 203
                 *********996655566642.222344444444.5555577**************************************************99***** PP

        TauE 192 wpllllllpgallGallGarlarrlsertlrrlfallllvlgv 234
                 w + ++l+p+++lG++lGarlarrl+++ lr++++++ +v+g 
  KIR61464.1 204 WAATGVLVPATMLGGFLGARLARRLPPALLRAVIIAFGTVVGG 246
                 ****************************************996 PP

>> BacteriocIIc_cy  Bacteriocin class IIc cyclic gassericin A-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.3   5.8e-06     0.052      44      89 ..       9      53 ..       3      55 .. 0.87
   2 ?   -2.9   0.3      0.94   8.4e+03      69      84 ..      98     113 ..      77     117 .. 0.61
   3 ?   -1.5   0.7      0.36   3.2e+03      63      73 ..     180     190 ..     149     225 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.8e-06
                     S---SSHHHHHHHHHHH---SSTTTTTSSSSS-STHHHHTSSSS-S CS
  BacteriocIIc_cy 44 qlatatarklldavasGaslgtafaiilGvtlPawilaaaaalGit 89
                      l ++ a  +++ava G+sl t f ++lG+ lP   ++ + al ++
       KIR61464.1  9 LLLAGLAGGIVNAVAGGGSLVT-FPALLGIGLPPVSANVTNALAVA 53
                     567789999***********87.999********999999999876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.94
                      TTSSSSS-STHHHHTS CS
  BacteriocIIc_cy  69 iilGvtlPawilaaaa 84 
                      ++  v +P  +l a+a
       KIR61464.1  98 AVFDVVVPFLVLGATA 113
                      4555666666655554 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.36
                      -SSTTTTTSSS CS
  BacteriocIIc_cy  63 lgtafaiilGv 73 
                      l   +++ +Gv
       KIR61464.1 180 LKNVLSATVGV 190
                      44444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1773.68
//
Query:       KIR61465.1  [L=575]
Description: gamma-glutamyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-105  353.7   0.0     2e-105  353.5   0.0    1.0  1  G_glu_transpept  Gamma-glutamyltranspeptidase


Domain annotation for each model (and alignments):
>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.5   0.0  1.1e-109    2e-105       2     510 ..      36     568 ..      35     570 .. 0.95

  Alignments for each domain:
  == domain 1  score: 353.5 bits;  conditional E-value: 1.1e-109
                      HHHHTT--HHHHHHHHHHHHHHHSTTT-STTSEEEEEEEETTSCEEEEEEE--BB-TT--TTTTTSCBCCHHHHSSGGG-BB--HHHHHHHHHH CS
  G_glu_transpept   2 evLrkGGnAvDAavAaalclgvvepqssGiGGGgfllvydaktkkvealdaretAPaaatkdmfdkegdsklsktgalavgVPGevagleeahk 95 
                       +L++GGnAvDA  +a ++l+v++    +  G + ++++ a++++v ++d+ ++ Pa + +d+f  ++++ +  +g l   VP++++++ +a++
       KIR61465.1  36 AILDAGGNAVDAGCCAGMALAVLHADEVNFAGVAPIMIRMADGTTV-SIDGLGVWPAGIPADLF-LREHAGTIPRGLLRTVVPAAPDAWITALR 127
                      69******************************************99.8****************.6667777889******************* PP

                      HH-SS-HHHHHHHHHHHHHH-EE--HHHHHHHHHCHHHHHTSHHHHHHHEETTSE--TTSEE--HHHHHHHHHHHHHT..............TH CS
  G_glu_transpept  96 kyGklpwadllepaiklareGfpvsealaralaeaeerlkkdpelaklFlpegevlkagellkqpalAktLerlaeeG..............ae 175
                      +yG++++ ++ e ai+lar+Gf   + l + + ++++  +++p+ a+++lpeg+++++ge+++q +lA++ +++a+                ++
       KIR61465.1 128 DYGTMSFGQVAEAAIRLARDGFAAFPLLVEGITARQRGYRNWPANAAIYLPEGRPPRVGERFVQTDLARSIQLMADAEaattggrlagleaaRA 221
                      ***************************************************************************96668888********99* PP

                      HHHSSHHHHHHHHHHHHTT-S--HHHHHH---EEES-EEEEETTCEEEEE-TTCSHHHHHHHHHHHHCTTTGGGCTTTCHHHHHHHHHHHHHHH CS
  G_glu_transpept 176 aFYkGelAeklvaelqkagGiltaeDLanykvevreplsadyrggytvyepppssggivllqiLnilegfdlkslssnsaetlhllvEamklay 269
                       FY+GelAe++va  +++gG+lta+DLa+++ + ++ l++++ ++  v++++++ +g++l+q+L+ile + l+ l+ ns+ ++hl+vEa+k  +
       KIR61465.1 222 VFYEGELAERMVAYHRENGGYLTARDLADFRCRREPVLTTRW-RDFAVLTCGAWCQGPTLAQTLQILEAYGLQGLEHNSPGYVHLVVEALKGVF 314
                      ******************************************.9************************************************** PP

                      HHHHHH-SSTTTSSSGHCHHHHHT-HHHHHHHHTT.BTTB..SG..............GGCSCGGCSCG....TTEEEEEEEEETTS-EEEEEE CS
  G_glu_transpept 270 adRsrylgDpdfvknptelveellskeyakeraklIkdkaatps..............seyykaaeaaee...sggTthlsvvDregnaVSlts 346
                      +dR++ +gDp fv++    ve+lls ++a+ ra+ I+ ++a+p               +    +++++ +   +g T++++vvD++gna S+t 
       KIR61465.1 315 SDREHLYGDPAFVDV---DVERLLSTAHAAARAAGIDADRAHPGlpdlifgapqplpeP----KDYDELPvvgEGATSYVCVVDAWGNAFSATP 401
                      *************85...5************************9********8755431....222222255599******************* PP

                      EESSTTTTSEBETTTTEBE--GGGGSBSTS..TTSCSTTSTTB--TT----B----EEEEETTEEEEEEEEESGGGHHHHHHHHHHHHHTT-S- CS
  G_glu_transpept 347 tinllFGsgvvvpgtGilLnnemddfstgvenafgldpspanaiePgkRplssmaPtivlkdgkpvlvlGaaGGsriisavlqvlvnvldlgld 440
                      + +    ++ v+pgtG++   ++ +           dp++++ ++PgkRp+ +  P iv++d+ +v+ +G +GG+++++a++qv++n + +g++
       KIR61465.1 402 SDGA--STSPVIPGTGFVPSLRGMQSR--------PDPAHPSGVAPGKRPRLTPNPAIVVRDDGSVMPFGCPGGDMQVQAMVQVFLNAFHFGMP 485
                      **99..899***********9999999........*********************************************************** PP

                      HHHHHHS--EEE..........SSSSTEEEESTTS.HHHHHHHHHTTSEEEESSSTCCCEEEEEEEE...TTTEEEEEE-TTT CS
  G_glu_transpept 441 lqeavdaprihh..........qllpdkvevEegfseevveeLearGhkvkevedsssvvaavavak...ekgvleaasDprk 510
                      lqeav+apr+ +          ++lp ++ +E++f++ ++e+L+arGh+v++ +++++  aav ++    ++g leaa+Dpr+
       KIR61465.1 486 LQEAVNAPRFSTwsfpnsfapfDYLPSRLFLEDRFPAGTLEALRARGHDVRSWPPFTRDAAAVEAIYrnaRTGFLEAAADPRQ 568
                      ***********9999998888888888**************************99999988888877789************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4158.00
//
Query:       KIR61466.1  [L=451]
Description: hypothetical protein TK50_27995 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-51  176.7   6.9      4e-48  165.1   1.0    2.1  2  Amidohydro_3  Amidohydrolase family
    6.5e-13   48.7   0.0    1.1e-07   31.5   0.0    2.2  2  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.7   9.5e-07    0.0085       4      49 ..      54      97 ..      51     108 .. 0.73
   2 !  165.1   1.0   4.5e-52     4e-48     152     473 .]     109     447 ..      90     447 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.5e-07
  Amidohydro_3  4 DakGrlvlPGFvDsHtHlagggvnl.rllrlpdarvtslegvltavr 49
                   ++G + +PG++D H+H+ +gg+++     + ++  ++l+ v++++r
    KIR61466.1 54 ELDGTTITPGLIDTHLHMQRGGLKIiH---DLGDATHDLDLVIATMR 97
                  699*******************55433...33334566666666655 PP

  == domain 2  score: 165.1 bits;  conditional E-value: 4.5e-52
  Amidohydro_3 152 plareaeaaavaaalaalasyGitsveagggnvsslddleplfeltaeeklplrvi..............ikelldaaerlglplspgseeltigav 234
                   p ++++ aaa++ +   + + G+t++    ++    ++l  ++e  ++++l++rv+                + +d+ + lgl+++ g++ l++g++
    KIR61466.1 109 PPTPADRAAALRLVQPLMHQLGFTGI---IDPAATPEELRGYQESRRRGELTMRVVampypevggfadpdVDGAIDWLRGLGLRTGDGDDLLRVGGI 202
                   5688999999999999**********...****************************************98899*********************** PP

  Amidohydro_3 235 klfadgvlgsrtalltepyf....tgwpdfedealaelvaaadergldvaihaigdaavddvldafeaaaekngnqdrr.rlehaegv.tesqierv 325
                   k+ +dg+     al   p      tg + ++ +++ +lv+ ++  g+ v++ha g aa++ vld f++a +k++  +r  +++h+     ++ ++ +
    KIR61466.1 203 KVYFDGEAMKGEALRRTPWPhngsTGRQRLPTAQFQRLVDFCATEGWSVGVHAVGGAAIATVLDCFAEADRKHPIAGRQwQIIHGYLEvEPESMALA 299
                   *****7776666666666666666899**********************************************************9988******** PP

  Amidohydro_3 326 aalqvaagvqpvfnf..edelldsrlg.perargstpvkellnagvkvalgsDapvgpfdpwprigaavmrktrrggevlrpdeelsleealalyTr 419
                   a+l+v  + qp        +l++   +  + a+  +p++++l+agv+v+lgsD p  pfdp   i++av+r+ r+ +e l p e +++ eala+yT+
    KIR61466.1 300 ARLGVVLAAQPSIPLrnAAGLVA---QlGAGAERMNPLRSWLDAGVPVVLGSDGPFFPFDPRELIWSAVTRRVRGRAEPLAPQEAITVAEALAAYTA 393
                   **********8888875333332...2235566669**************************************999******************** PP

  Amidohydro_3 420 gpAkalgledrkGtLevGadADlvvldadpldvdppelaearvrltvvdGrvvy 473
                   ++A a +  dr+G+L++G  AD v +d+dpl v+p+el + rv  tvv+Gr+v+
    KIR61466.1 394 TAAVAAFDGDRRGRLAPGRLADWVAFDRDPLGVPPDELPTLRVLRTVVGGRTVH 447
                   ****************************************************96 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.4   1.3e-06     0.012       1      50 [.      59     102 ..      59     104 .. 0.85
   2 !   31.5   0.0   1.3e-11   1.1e-07     170     344 .]     284     446 ..     238     446 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-06
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEE CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtt 50 
                   +++PGlID+H+H + +       ++++ +  +a + l  +i+t+ + G++
    KIR61466.1  59 TITPGLIDTHLHMQRGG------LKIIHDLGDATHDLDLVIATMRERGFE 102
                   69**********97664......455699999999999999999999985 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 1.3e-11
                   EEEETTTTSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHHHHHHH CS
  Amidohydro_1 170 iehgthlevaeslglldeiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvkvglgtDgaasgnslnlleelrlalk 266
                   i+h ++lev      ++++ l++  gv l +  ++ l+     ag++   +     ++ +++lr  ld+Gv v+lg+Dg      +   +el++ + 
    KIR61466.1 284 IIH-GYLEV-----EPESMALAARLGVVLAAQPSIPLRN---AAGLV---AQLGAGAERMNPLRSWLDAGVPVVLGSDGPFFPFDP---RELIWSAV 365
                   555.55555.....4566777777777777442223222...24444...3344466677788888888*********66544444...77888887 PP

                   HHHHCCTT...TTHCHCHHHHHHHHHTHHHH.HHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 267 lqrgllye...deegglslkealrmaTingA.kalglddkvGsievGkdADlvvvdldilaafvglkkdgnvkkvivkGklv 344
                   ++r+  +     ++  ++++eal+++T  +A  a+   d+ G++++G+ AD v++d d+l       +   v +++v+G++v
    KIR61466.1 366 TRRVRGRAeplAPQEAITVAEALAAYTATAAvAAFD-GDRRGRLAPGRLADWVAFDRDPLGVPPDELPTLRVLRTVVGGRTV 446
                   7776666678988999***************55555.68******************9988888889999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3380.89
//
Query:       KIR61467.1  [L=273]
Description: hypothetical protein TK50_28000 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-07   29.6  18.9    5.1e-07   29.6  18.9    2.3  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   4.8     0.071   1.3e+03      43      77 ..      25      81 ..       9      97 .. 0.47
   2 !   29.6  18.9   2.8e-11   5.1e-07      15     181 ..      87     271 ..      71     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.071
  BPD_transp_1 43 f..........................vilsilghlilp.viillllsaapyvrlirraalr 77
                  +                          +      ++++  ++++++++ a +v+ +++a+  
    KIR61467.1 25 AgpvvalvqqalsgegnafaeslrmevF-----VDSVWRtLLLAAVVTVATVVVGTCYAFAI 81
                  1344555555556666666666433333.....33333334444444444455555555554 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 2.8e-11
  BPD_transp_1  15 kldkllrpliivllslPsfv....lail......lvlvf......vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrw 95 
                   +++ ll++   + l++ ++v    +++l      l++v+      +   +++++  ++  +++  ++p+++l + a +   ++++ +aa++ Ga++ 
    KIR61467.1  87 WVKALLMGGLLISLWTSVMVrtigWMLLelptgaLFWVLellhlrSEPIDFYQSTAAMYPAMIAVMLPFAVLPVLASVIGFDREQLKAATVFGAGPL 183
                   5555555555555555555544331111222222222225566887777899999999999999999****************************** PP

  BPD_transp_1  96 qifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis.....nggvlalviavlllnlvadilqrlldp 181
                    ++  vvlP++   +i+g +l+f+ +lg +v +++lg   G  +++++ i++ +++ ++     ++++l lv  ++++ lvad l ++ ++
    KIR61467.1 184 LTLGAVVLPAIRQAMISGGVLVFVMSLGFYVTPLLLG---GPANMTMSGIINAQLNTANradvgAAMSLLLVGGTVAIYLVADRLFKVSER 271
                   *************************************...557788888888888877789***9*******************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1729.29
//
Query:       KIR61468.1  [L=282]
Description: hypothetical protein TK50_28005 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-13   49.9  14.7    3.1e-13   49.9  14.7    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   5.0      0.14   2.6e+03      30      44 ..      15      60 ..       9      99 .. 0.45
   2 !   49.9  14.7   1.7e-17   3.1e-13       6     168 ..      90     258 ..      85     274 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.14
  BPD_transp_1 30 lPsfvlaillvlvf...............................v 44
                  lP++v+a++  l+f                                
    KIR61468.1 15 LPILVVALVTSLLFyvpflvvvatswtetsfiifppdgfslqsysG 60
                  3444444443322222333333333334444444555555555550 PP

  == domain 2  score: 49.9 bits;  conditional E-value: 1.7e-17
  BPD_transp_1   6 ilaa....lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqif 98 
                    l a    + r++  + ++r+l+iv++++P+++ a+ l+ v     +l++    +++  +l a+pyv+++++++l++ +  l+ +a +lGas   ++
    KIR61468.1  90 TLGAlaltRLRSRAARSWVRTLFIVPMAIPPVAYAVGLYSVSLRAEALQDNLALLVLGEALLAVPYVFVMVSSGLSQADPALRPVASTLGASWPMVI 186
                   3333334699***********************88888877667777777777799999************************************** PP

  BPD_transp_1  99 rkvvlPnalppiitglilafggllggavlleflgswpG...lgtllleailgydyseisnggvlalviavlll 168
                   ++v lP+++  +++g+++af+ ++ + vl  fl+   G   l +++l+a+++   ++ +++++l+  +av+ll
    KIR61468.1 187 WRVDLPMIVGHMLAGAVFAFAVIFDEVVLSVFLTPI-GvktLPLQMLTASQEELSPQLTAASTLVSMLAVALL 258
                   ***************************999999955.636666666666666666655544444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1887.29
//
Query:       KIR61469.1  [L=353]
Description: hypothetical protein TK50_28010 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-35  121.3   0.0    7.6e-35  120.4   0.0    1.5  1  ABC_tran     ABC transporter
    3.6e-10   39.9   1.1    8.8e-10   38.6   0.5    2.1  1  TOBE_2       TOBE domain
      4e-08   33.4   0.3     0.0022   17.9   0.2    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    3.6e-06   26.6   0.8    0.00018   21.0   0.8    2.1  1  SMC_N        RecF/RecN/SMC N terminal domain
     0.0024   17.8   0.6     0.0058   16.5   0.1    1.7  2  RsgA_GTPase  RsgA GTPase
     0.0031   17.6   0.1      0.015   15.4   0.1    2.0  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0089   15.7   0.1      0.017   14.8   0.1    1.4  1  AAA_29       P-loop containing region of AAA domain
  ------ inclusion threshold ------
       0.01   16.2   1.2      0.031   14.6   1.2    1.9  1  AAA_16       AAA ATPase domain
       0.02   14.4   0.4       0.92    9.0   0.0    2.3  2  FeoB_N       Ferrous iron transport protein B
      0.038   14.4   0.0          7    7.1   0.0    2.4  2  AAA          ATPase family associated with various cellular a
      0.071   13.4   0.0       0.28   11.4   0.0    1.9  2  AAA_28       AAA domain
      0.081   12.8   0.2       0.15   11.9   0.2    1.4  1  NACHT        NACHT domain
       0.09   11.9   0.1       0.15   11.2   0.1    1.3  1  NB-ARC       NB-ARC domain
      0.091   13.0   0.1       0.42   10.9   0.0    1.9  2  AAA_22       AAA domain
      0.095   13.2   0.1       0.16   12.4   0.1    1.3  1  AAA_23       AAA domain
       0.16   11.5   3.8        1.7    8.2   2.8    2.8  2  AAA_25       AAA domain
       0.19   11.6   0.0       0.29   11.0   0.0    1.2  1  ATPase_2     ATPase domain predominantly from Archaea


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   0.0   7.2e-38   7.6e-35       1     137 []      20     163 ..      20     163 .. 0.93

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 7.2e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 l+ vsl+ ++g+ v ++G +G+GK+tLl+++agl + ++G++l+dg+++++  ++  ++++gv++q   lfp+++v+en             e+++ ++
  KIR61469.1  20 LRGVSLDAEPGTFVTLLGASGSGKTTLLNVIAGLQQLDSGHVLFDGENVER--RPPRKRRVGVVFQSYALFPHMSVGENvafplraarrpaaERRRVVQ 116
                 6789***********************************************..9999****************************99998766666688 PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++l+ ++l ++ d+      +sLSgGq+qrvalaral+++p++lllDEp+a
  KIR61469.1 117 EMLDLVDLGGMVDRAP----ASLSGGQRQRVALARALASDPSILLLDEPMA 163
                 8888888888666665....*****************************85 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.5   8.4e-13   8.8e-10       2      72 ..     262     335 ..     261     340 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 8.4e-13
      TOBE_2   2 aiRPEklrlaaagg.a.n.glsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswdpdd 72 
                 ++RPE+l + +ag+ +    ++G+V+ ++++Gs  r+ v++++g+ vv++ p+++++ al pG++V+l++   d
  KIR61469.1 262 VVRPEDLVVLDAGQlGdRwHVRGVVRLLSFQGSRFRLEVTTPAGRSVVCSLPPHTDAGALLPGSEVTLGCADSD 335
                 79*******855555425899**********************************7579*********986543 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   2.1e-06    0.0022       2      33 ..      33      65 ..      32      82 .. 0.77
   2 !   13.8   0.0   3.7e-05     0.039     226     298 ..     124     194 ..      82     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.1e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl.drdveglt 33
                  l G+ gsGK++LL  + +l++l  ++v +++
  KIR61469.1 33 VTLLGASGSGKTTLLNVIAGLQQLdSGHVLFDG 65
                6799******************98744444443 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.7e-05
      AAA_21 226 ngdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                  g+  ++ +++lS G+++  al+ al++++   s+ll+DEp + L+ +l +r    +k+ ++  g+  +++TH+
  KIR61469.1 124 LGGMVDRAPASLSGGQRQRVALARALASDP---SILLLDEPMAALDKQLRERMQVEIKRIQQqVGITTVAVTHD 194
                 55566778999********9********99...**************999988766644444366777777776 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.8   1.7e-07   0.00018     121     213 ..     119     209 ..      10     215 .. 0.61

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.7e-07
                 HHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-..SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
       SMC_N 121 kevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka..dklvgvtk 213
                  ++ +l  +++  + +LSgG+++ vala  +A       ++ llDe  aaLD++ ++++   +k+ ++++ +  +++++++ e +  + lv +++
  KIR61469.1 119 LDLVDLGGMVDRAPASLSGGQRQRVALARALAS----DPSILLLDEPMAALDKQLRERMQVEIKRIQQQVGITTVAVTHDQAEAMtmSDLVAIMH 209
                 3444444444455669**********9998875....45799**********************9998877777777776666653377777766 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   5.5e-06    0.0058     100     130 ..      31      61 ..      17      66 .. 0.87
   2 ?   -1.5   0.1         2   2.1e+03      65      89 ..     174     198 ..     157     215 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.5e-06
                  SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgev 130
                   +++l+G SG GK+tL+n++++ ++l  g+v
   KIR61469.1  31 TFVTLLGASGSGKTTLLNVIAGLQQLDSGHV 61 
                  57899****************9888877665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2
                  HHHHHHHHHHTTSEEEE--TTTHTT CS
  RsgA_GTPase  65 leelkeelealgyevllvsaktkeg 89 
                    e+k   +++g+++++v  ++ e+
   KIR61469.1 174 QVEIKRIQQQVGITTVAVTHDQAEA 198
                  3445555566666666555444433 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.4e-05     0.015       2     101 ..      33     173 ..      32     196 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE.........................................EEEEECGGCSS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke.........................................ielvDtpGlie 58 
                 v ++G + +GK+tL+n + g  +   ++  +   +++++  +  +++                                         + lvD+ G+++
  KIR61469.1  33 VTLLGASGSGKTTLLNVIAGLqQLDSGHVLFDGENVERRPPR--KRRvgvvfqsyalfphmsvgenvafplraarrpaaerrrvvqemLDLVDLGGMVD 129
                 7899***************95467778888887777777665..222445566667777777777888888888888888888888889*******886 PP

                 HHHHHH.HHHHHHHHHHC...TSEEEEEEETTTTCSHHHHHHHHHHH CS
    MMR_HSR1  59 gaseek.glgkaflalee...adlillvvdaseeklkpldeeleell 101
                 +a  +  g +++  al +   +d  +l++d   e +++ld++l e +
  KIR61469.1 130 RAPASLsGGQRQRVALARalaSDPSILLLD---EPMAALDKQLRERM 173
                 444444422233332222243699999999...45666666665554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.7e-05     0.017      16      40 ..      24      48 ..      12      54 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.7e-05
      AAA_29 16 tieidlkgatlltGpsGsGKSTllD 40
                +++ ++  ++ l G+sGsGK+Tll 
  KIR61469.1 24 SLDAEPGTFVTLLGASGSGKTTLLN 48
                5555655588899**********95 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.2     3e-05     0.031      24      63 ..      29      70 ..      17     216 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3e-05
      AAA_16 24 p.elvllsGesGvGKsslvrellralekdggif.lrgkcdql 63
                p   v l G+sG+GK++l++ ++   + d g++ + g++++ 
  KIR61469.1 29 PgTFVTLLGASGSGKTTLLNVIAGLQQLDSGHVlFDGENVER 70
                357899*************99995333332444344444433 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00087      0.92       3      25 ..      33      55 ..      31      71 .. 0.89
   2 ?    3.3   0.1      0.05        52     114     147 ..     164     197 ..     150     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00087
                EEEEESTTSSHHHHHHHHHTTSE CS
      FeoB_N  3 valvGnpnvGkttlfnaltgakq 25
                v+l+G   +Gkttl+n ++g +q
  KIR61469.1 33 VTLLGASGSGKTTLLNVIAGLQQ 55
                7899****************987 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.05
                 THHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTB CS
      FeoB_N 114 mideaekkgieidlkkLsekLgvpvvktsakkke 147
                  +d+  ++++++++k++++++g+  v+++  + e
  KIR61469.1 164 ALDKQLRERMQVEIKRIQQQVGITTVAVTHDQAE 197
                 67889999***************99998877665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0067         7       2      20 ..      34      52 ..      33      88 .. 0.88
   2 ?    5.2   0.0     0.026        28      46      87 ..     139     182 ..     100     208 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0067
                EEESSTTSSHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavak 20
                 l G  G GKT+l + +a 
  KIR61469.1 34 TLLGASGSGKTTLLNVIAG 52
                689************9996 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.026
                 HHHHHHHHHHTS.TSEEEEEETGGGHHHHH.TTCCCHHHHHHHH CS
         AAA  46 irelfkeakeka.kpsilfiDEidalaksr.sgseseeeervvn 87 
                  r+ ++ a++ a +psil++DE  a   ++ +++ + e +r+++
  KIR61469.1 139 QRQRVALARALAsDPSILLLDEPMAALDKQlRERMQVEIKRIQQ 182
                 456666677777779*******8887777733333333333333 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00027      0.28       2      20 ..      33      51 ..      32      77 .. 0.80
   2 ?   -0.7   0.0       1.5   1.5e+03     120     138 ..     164     174 ..      83     200 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00027
      AAA_28  2 ivitGgestGKTtlleaLa 20
                + ++G++++GKTtll+ +a
  KIR61469.1 33 VTLLGASGSGKTTLLNVIA 51
                6799***********9887 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.5
      AAA_28 120 eidddgeRredleereaid 138
                  + d + R+       +++
  KIR61469.1 164 AL-DKQLRE-------RMQ 174
                 33.222222.......222 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00014      0.15       3      21 ..      33      51 ..      31      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                v l G++GsGKTtLl  +a
  KIR61469.1 33 VTLLGASGSGKTTLLNVIA 51
                7899***********9887 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00015      0.15      16      41 ..      27      51 ..      18      65 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                TTSCSEEEEEEESTTSSHHHHHHHHC CS
      NB-ARC 16 delqslvvalvGmgGvGKttlakqil 41
                 e++  +v+l G  G+GKttl++ i 
  KIR61469.1 27 AEPG-TFVTLLGASGSGKTTLLNVIA 51
                5677.89**************98775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0004      0.42       5      26 ..      30      51 ..      26      89 .. 0.84
   2 ?   -0.3   0.1       1.2   1.2e+03      76      92 ..     167     188 ..     105     215 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0004
      AAA_22  5 agilvvtGesGtGKTtllrrll 26
                 +++++ G sG+GKTtll+ ++
  KIR61469.1 30 GTFVTLLGASGSGKTTLLNVIA 51
                68999************98665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.2
      AAA_22  76 eellealeqalrarav.....i 92 
                 ++l+e+++  +++ +      +
  KIR61469.1 167 KQLRERMQVEIKRIQQqvgitT 188
                 3344444444444444444433 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00016      0.16      10      39 ..      17      50 ..      11      53 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00016
      AAA_23 10 f...rdqeidFskglt.lItGpNGaGKTTildAi 39
                f   r++++d ++g +  + G  G+GKTT+l+ i
  KIR61469.1 17 FevlRGVSLDAEPGTFvTLLGASGSGKTTLLNVI 50
                44447778888887652599***********988 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.8    0.0016       1.7      32      54 ..      29      51 ..      23     199 .. 0.75
   2 ?   -1.6   0.0       1.6   1.7e+03      98     149 ..     224     272 ..     206     275 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0016
      AAA_25 32 agelallaGapgtGKttlaldla 54
                 g+++ l Ga+g+GKttl+  +a
  KIR61469.1 29 PGTFVTLLGASGSGKTTLLNVIA 51
                5899*************987665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.6
      AAA_25  98 rddarllvldlagv.eslpLfakdrggtl.ltadvdaleaaieevegvrlvviD 149
                 r++ +++v +   + ++ +Lf +dr+g+l +++   a   a+ +    +lvv+D
  KIR61469.1 224 RRPVDEYVAS---FlGEANLFPADRQGPLpVDSGAPATGTAVVRP--EDLVVLD 272
                 4555555555...44558888888888888777776666666663..4888888 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00028      0.29      15      53 ..      25      63 ..      22      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00028
    ATPase_2 15 lerepneiyfiYGpegsGKtaLlkeiienledkdkyviy 53
                l+ ep +++ + G  gsGKt+Ll+ i+  ++  + +v++
  KIR61469.1 25 LDAEPGTFVTLLGASGSGKTTLLNVIAGLQQLDSGHVLF 63
                5778999999**************999888666666766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 2514.96
//
Query:       KIR61470.1  [L=352]
Description: hypothetical protein TK50_28015 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-23   81.9   0.0    6.5e-23   81.6   0.0    1.1  1  PTE       Phosphotriesterase family


Domain annotation for each model (and alignments):
>> PTE  Phosphotriesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   3.6e-27   6.5e-23       4     297 ..      12     331 ..       9     332 .. 0.88

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 3.6e-27
                 GCTSCEEEEE-SCEE-HHHHCHCCCCC--HHH.........................HHHHHHHHHHHHHHTTEEEEEE---CCCT--HHHHHHHHCCH CS
         PTE   4 sdlGvtLahehltitldefkqnvpealevedk.........................evaaiieellelkarGvdalveltttglgRdvqtlkrvaeet 77 
                 + +G+  +h hl  + + +  +  e    +++                         ++aa  +el    a Gvd +ve t +glg d + l  + ++ 
  KIR61470.1  12 AGVGRVNMHQHLLSDASALSRPGAEPAPADQRvttanlgflrwnalaladnlrlddpRLAA--AELR-HAAGGVDLVVEDTSIGLGPDHPALPAISRAA 107
                 5678888888888888888877666555445566778888888888888888777444444..4554.4799*************************** PP

                 SSEEEEEECB--CCG--TCCCCS-CHCHHHHHHHHHHT-STTTS--EEEEEEEE-CTBS-HHHHHHHHHHHHHHHHH---EEEEEGCCTTCHHHHHHHH CS
         PTE  78 gvnivaatGfYvdatvpeaararsveeltdvlvdeiehGidgteikaGiikeigtsgkltpseekvleavaqahkqtGaPisihtsaslragleqlril 176
                 gv++ +a G+Yv  t p  ar    + +   l   + + + gt+ +a +++ +gt   +   e+  l+a+a a +  Ga + +  + + r+g+e+++ l
  KIR61470.1 108 GVHVAVAYGLYVTPTLPGWARDLDEDGVHRLLHGALTDRVPGTDYRAALLGIMGTTAAFPAVERARLRAAAVAAAGAGASVGVRLDGDSRTGVEVVAEL 206
                 *****************999888888888888888899999********************************************************** PP

                 HHTT--GGGEEETTGGCS--HHHHHHHHHTT-EEEE--TT-TT.......TS-HHHHHHHHHHHHHTT-GGGEEE-----SEECCCSCCCCCHHTTHHH CS
         PTE 177 qeeGvDlsrvvvghldtktdvkellelidlGaYleyDlfgvdl.......ispdekRirivhalvdrGyedrillshDittkfralkkelvgyaydlll 268
                   +G    r+ ++  d+  d  +  +l+d Ga le+  fg++         + d +R+    a+       r +l   + tk ++ ++++ gy +    
  KIR61470.1 207 TGAGLPADRILLTNADEYLDAAYWHDLLDTGATLEMC-FGTECqhvgrmrNPSDGQRLDFFEAFLAARPDGRWVLGGSVWTKAQLRRYGGEGYDHL--T 302
                 ***********************************94.65555556776588999******999999999***********999999999888765..5 PP

                 HTHHHHHHHTT--HHHHHHHHTHHHHHHH CS
         PTE 269 tdviPklkqrGlteeqldkiLvenPkqil 297
                 t v+P+l +rG++ + l  ++   P+++l
  KIR61470.1 303 TRVLPELVRRGVAPDRLAAMVTHEPRRLL 331
                 ***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 3011.00
//
Query:       KIR61471.1  [L=482]
Description: betaine-aldehyde dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-172  573.7   0.1   2.7e-172  573.5   0.1    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  573.5   0.1  1.5e-176  2.7e-172       7     462 .]      25     478 ..      20     478 .. 0.98

  Alignments for each domain:
  == domain 1  score: 573.5 bits;  conditional E-value: 1.5e-176
                 SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHH..HHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH CS
      Aldedh   7 etievinPatgeviakvpaataedvdaavaaAke..afkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyael 103
                 e ++v++Pat+ev++++ +at++dvdaav aA++  a ++w  lp+ eR +iL+++adl+e++ eela let+++Gkp++ +ra+v+ a++++r +a++
  KIR61471.1  25 ELFDVVDPATEEVLTRAVQATPADVDAAVGAARRslADRRWVGLPPLERTRILHRVADLIEAELEELAILETRDNGKPIERSRADVATAARTFRHFAGA 123
                 349*******************************555559*********************************************************** PP

                 HHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHH CS
      Aldedh 104 aeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealv 201
                  ++l g+++p+    ++ +++ eP+Gv ++I PWNfP+++ a k+apalaaG++vv+KPae+tpl++l+la l+ +ag+P+gvlnv+tg+g+ vg+alv
  KIR61471.1 124 PSRLLGSTVPIdPGAHHVYTTLEPVGVAALILPWNFPIMTGAFKIAPALAAGCSVVVKPAEQTPLTMLRLADLITAAGVPAGVLNVLTGDGR-VGAALV 221
                 ***********559999************************************************************************886.****** PP

                 H-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS- CS
      Aldedh 202 ehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgd 300
                 +hp+v+kvsftGstevgr + +aa+++l rvtlElGGk+++iv++daDld+av+ +++++fg++GQ C+a+srllv++ +  ef+ +l+eaa+++ vgd
  KIR61471.1 222 DHPGVAKVSFTGSTEVGRLVGAAATRRLARVTLELGGKSANIVFADADLDAAVTTALRASFGHSGQMCTAGSRLLVHRAVLAEFTGRLAEAAARVPVGD 320
                 *************************************************************************************************** PP

                 TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEE CS
      Aldedh 301 pldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaa 399
                 +l+    vGPl+s++q+e+v +yv+++++ega+ll+Gg    a    g++v Ptv+a+vt+dm ia+eEiFGPV+ v+ f+de ea++iaNd+ yGLaa
  KIR61471.1 321 GLAGGISVGPLVSAEQRERVLGYVAQGRAEGAELLVGG---AAPAGPGFYVPPTVFAGVTNDMVIAREEIFGPVVGVLAFDDEVEAVRIANDSTYGLAA 416
                 **************************************...77889***************************************************** PP

                 EEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 400 gvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 gv+t+dl+ra+rva++le+G+v++N+++++++    fgG k+Sg+Gr+ g e+l+ y+e k+v
  KIR61471.1 417 GVWTTDLSRAHRVAAQLEVGTVWVNSYNVFDPAL-SFGGRKESGVGRDLGDEALHGYLESKAV 478
                 **********************************.*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 3156.27
//
Query:       KIR61472.1  [L=638]
Description: monoamine oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.1e-144  480.2   0.0   6.1e-144  479.9   0.0    1.0  1  Cu_amine_oxid    Copper amine oxidase, enzyme domain
    1.1e-16   61.1   0.0    2.1e-16   60.1   0.0    1.5  1  Cu_amine_oxidN3  Copper amine oxidase, N3 domain
  ------ inclusion threshold ------
      0.063   13.3   0.8       0.17   11.9   0.0    2.2  2  DUF2866          Protein of unknown function (DUF2866)


Domain annotation for each model (and alignments):
>> Cu_amine_oxid  Copper amine oxidase, enzyme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  479.9   0.0    1e-147  6.1e-144       2     409 ..     217     623 ..     216     624 .. 0.97

  Alignments for each domain:
  == domain 1  score: 479.9 bits;  conditional E-value: 1e-147
                    ----TT---SEEETTTEEEETTEEEEEEEETTTEEEEEEEEETT....EEEEEEEEEEEEEEEE--SSHHHHH-EEEGGGT.-SGGG-----TTTS CS
  Cu_amine_oxid   2 evvqpeGpsfkvdegnlvewqkWsfrvgfnrreGlvlhdvrykg....rrilyrlslsemvvpYgdprppasrkaafDlgeyglGklansLelgcD 93 
                    e+vqpeGp f++ +g+lv+wq+Wsfrvgf++reGlvlhdv y++    r+++ r+++sem+vpY d++p+a+rk++fD geyg+G l+ sLelgcD
     KIR61472.1 217 EIVQPEGPGFTI-DGQLVTWQNWSFRVGFTHREGLVLHDVVYHDgdeaRPVVRRAAVSEMYVPYLDSDPTAYRKNFFDWGEYGAGPLTASLELGCD 311
                    79**********.7********************************************************************************** PP

                    S-TT-EEEEEEEEE..TEEEEEEEEEEEEEEE-S-SEEEE-S....EEEE--EEEEEEEEEEETTEEEEEEEEE-TTS-EEEEEEEEE----EE-T CS
  Cu_amine_oxid  94 ClgeityldavladssgepvtiknaiCifEedagilwkHtdfrtgraevtrnreLvvrtiatvgNYdYifdyiFkqdGsievevratGilstaala 189
                    Clgei+y+d+ + + +ge+ tikna+C++Eed  ilwkH++ rtg+a+v+r+r+Lv++++atv+NYdY f++ F+qdG i +e+++tG++s++ ++
     KIR61472.1 312 CLGEIRYFDTAVLNGHGEARTIKNAVCLHEEDFSILWKHVNTRTGEADVRRSRRLVISFFATVANYDYGFYWSFYQDGMIDLEIKLTGVMSVSGID 407
                    ************************************************************************************************ PP

                    .....GG--EEETTEE---EEEEEEEEEEE-T.SSEEEEEEEEE-T..TT.T-...-EEEEEEEEEE--BGGG-EE--.-GG-EEEEEEEEEEE-T CS
  Cu_amine_oxid 190 eeeeskygtrvapgvlasiHqHlfslrvDldidgeknsvveeelvpeepelgeenpagnafkvektvletekeaaldldpeknrvlkivnenkknk 285
                    ++++ +yg  vap+v+a++HqH+f lr+D+ +dg  n+++e +++  ep+ ++ np+gna ++ +t+++te+eaa++++p+++ ++ + +++++n+
     KIR61472.1 408 DGQTPRYGRLVAPNVQAPNHQHYFGLRLDMGVDGPLNRLYEIHAEV-EPD-EALNPYGNACRMVRTPITTEAEAARNTNPAQAVHWLVESTSRTNR 501
                    999899****************************99*******987.354.568****************************************** PP

                    TS-EEEEEEE-S----..---SS-TTTTTTTGGGG-SEEEEE--TT---S--TTGG-TTS.---GGGG-.S--B-SSEEEEEEEEEEEEE---GGG CS
  Cu_amine_oxid 286 lgepvgYklvpssaasqlllakesslvakraefakhhlwvtkykdselyaageynnqskgepvglakwvednesieneDlVvWvtlGltHvpraeD 381
                    +g ++gY+l+   ++++ l+a+++s v+++a f+ ++lw t+y+++e++ agey+nq     +g+++w + n+s+++ +lV+W  +G++H pr+e+
     KIR61472.1 502 YGDQTGYRLTL--PNTARLYARPGSIVERKAPFVAKQLWATPYEPTERFIAGEYPNQAPLGAEGITAWQQANRSLDGVELVLWPVVGVHHDPRPEE 595
                    *********99..66778*************************************88887458********************************* PP

                    SS-TTTSEEEEEEEEES-SSS-GGGG-S CS
  Cu_amine_oxid 382 fPvmpvetvsflLkPvnFfdenpaldvp 409
                    +P+m v+ +++ L+P +Ffd+np+ld+p
     KIR61472.1 596 WPIMAVHRIGMRLEPDGFFDRNPSLDLP 623
                    **************************98 PP

>> Cu_amine_oxidN3  Copper amine oxidase, N3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   3.6e-20   2.1e-16       2      96 ..      96     192 ..      95     195 .. 0.95

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 3.6e-20
                      ---HHHHHHHHHHHHTGGGGHHHHHHHHTTT.T---EEEE--SS-SSST..T--EEEEEEEE--SSS.-GCGSEEE.EEEEEE--SSSGGG-EE CS
  Cu_amine_oxidN3   2 pvlleelaeieevikelpqfkealkkrgienldkvvltpltvgyrgeks.egkRllkalvyyrtesa.nlyahPiegLellvDleakkvieitd 93 
                       v+ ee   ++++ +e+++f++al+ rgi++++ v ++p +++ ++ ++  g+Rl++  v++r++++ n ya+P+ gL++++Dle+++v+ i+d
       KIR61472.1  96 GVSSEEARMVAQACREDAAFQAALARRGITDVSLVWVDPESITGFEPEDlVGRRLSWGTVWHRVSEDdNGYARPVAGLVPIIDLETLEVVRIED 189
                      5788999999*****************************************************99999************************** PP

                      EEE CS
  Cu_amine_oxidN3  94 qkv 96 
                      ++v
       KIR61472.1 190 HGV 192
                      984 PP

>> DUF2866  Protein of unknown function (DUF2866)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.2         3   1.8e+04      42      50 ..      12      20 ..      11      21 .. 0.84
   2 ?   11.9   0.0   2.9e-05      0.17      13      41 ..     460     488 ..     455     501 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 3
     DUF2866 42 Teaevaeai 50
                T+ae+ae +
  KIR61472.1 12 TAAEIAEVV 20
                999**9987 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.9e-05
     DUF2866  13 qPwGrgyRlVEWtikedgriaRrvvaaev 41 
                 +P+G+++R+V   i +++++aR   +a+ 
  KIR61472.1 460 NPYGNACRMVRTPITTEAEAARNTNPAQA 488
                 7*********************9988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 4045.43
//
Query:       KIR61473.1  [L=336]
Description: hypothetical protein TK50_28040 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-49  169.3   0.0    3.6e-48  164.5   0.0    2.0  1  PTE       Phosphotriesterase family


Domain annotation for each model (and alignments):
>> PTE  Phosphotriesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.5   0.0     2e-52   3.6e-48       3     296 ..      13     332 ..      11     334 .. 0.88

  Alignments for each domain:
  == domain 1  score: 164.5 bits;  conditional E-value: 2e-52
                 GGCTSCEEEEE-SCEE-HHH..HCHCCCCC--HHH...................HHHHHHHHHHHHHHTTEEEEEE---CCCT-...-HHHHHHHHCCH CS
         PTE   3 tsdlGvtLahehltitldef..kqnvpealevedk...................evaaiieellelkarGvdalveltttglgR...dvqtlkrvaeet 77 
                 ++dlG tL heh++ +l+    +    + +e+ ++                   e++a  + + +   r     v++ +tg +R   +v   +++ae+t
  KIR61473.1  13 PEDLGLTLPHEHVFANLTRTesRDGFMTVWEERERdirrfverggktlwdvtngELSAYAAPVYY--DRDPAHQVQNPVTG-SRsvaNVLATRELAERT 108
                 689**********988765510566778899888899*********9998877766555555544..46666677777777.440114445578***** PP

                 SSEEEEEECB--CCG--TCC.CCS-CHCHHHHHHHHHHT-STTTS--EEEEEEEE-C.TBS-HHHHHHHHHHHHHHHHH---EEEEEGCCTTCHHHHHH CS
         PTE  78 gvnivaatGfYvdatvpeaa.rarsveeltdvlvdeiehGidgteikaGiikeigts.gkltpseekvleavaqahkqtGaPisihtsaslragleqlr 174
                 gv +v +tG+Y +a   ++  + +s ++++d lv ++++ i gt+++aG+i+ei+++ +++t  ee+ ++a+ +a   tGa +s+h+ + + +g  q+ 
  KIR61473.1 109 GVTVVLGTGHYFEAYLDQGWwERTSTNQIADHLVADLLDEIPGTGVRAGLIGEIASDqPRITANEERSFRAAGRAAVETGALVSTHAPTYP-TGEAQID 206
                 ****************9885267899****************************988799***************************9999.999**** PP

                 HHHHTT--GGGEEETTGGCS--HHHHHHHHHTT-EEEE--T......T-TTTS-HHHHHHHHHHHHHTT-GGGEEE-----SEECCCSCCCCCHHTTHH CS
         PTE 175 ilqeeGvDlsrvvvghldtktdvkellelidlGaYleyDlf......gvdlispdekRirivhalvdrGyedrillshDittkfralkkelvgyaydll 267
                 il +eGvD  r+v+gh dt +dv + l+l++ G Y++yD +      g+ ++++   R+  +  lvdrG++ +ills+D+ +  r+++ el+g +  +l
  KIR61473.1 207 ILTAEGVDPERIVIGHTDTVKDVRYSLDLLHRGVYVQYDCMmacksgGQVVVPELRRRVDYLRHLVDRGFAAKILLSQDVSQ--RSHQAELGGPGMCFL 303
                 ****************************************9999995555688899*************************9..*************** PP

                 HHTHHHHHHHTT--HHHHHHHHTHHHHHH CS
         PTE 268 ltdviPklkqrGlteeqldkiLvenPkqi 296
                 + ++       G+  e+l  + v+nP++ 
  KIR61473.1 304 FEEFTEYAVAAGIEPEVLTMMTVDNPRRA 332
                 ***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2243.66
//
Query:       KIR61474.1  [L=118]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-19   69.4   0.9      2e-19   69.0   0.9    1.2  1  Cupin_3   Protein of unknown function (DUF861)
    5.3e-06   26.0   0.3      1e-05   25.1   0.3    1.5  1  Cupin_2   Cupin domain
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.022   14.5   0.0    1.1  1  EutQ      Ethanolamine utilisation protein EutQ
      0.026   14.9   0.0      0.043   14.2   0.0    1.3  1  MBT       mbt repeat
      0.077   13.4   0.0        0.1   13.1   0.0    1.2  1  Ppnp      Pyrimidine/purine nucleoside phosphorylase


Domain annotation for each model (and alignments):
>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.9   5.6e-23     2e-19       3      74 .]      41     113 ..      39     113 .. 0.95

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 5.6e-23
                 CCTCCEEEEEEEECEEEEECESS.EEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTEEECCCEEEEEEEEE CS
     Cupin_3   3 elgvfswgiwectpGkfrltyee.dEfcyileGevkvtpeggetvelraGDlvvlpkglsgtwdvsetvrKaY 74 
                 e+ ++  g+we+ pG+ r+++ +  E++++++G+++v  +g+e+ e+ aG+ +++p g+ gtw+v+et rK+Y
  KIR61474.1  41 EARTVISGVWESDPGTSRWEFLTrGEIIHVVSGRMTVQRDGEEPAEVTAGSTAYFPIGWCGTWTVHETLRKVY 113
                 6677889*************9888************************************************9 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.3   2.9e-09     1e-05       3      52 ..      50      98 ..      48     110 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2.9e-09
                EEEETTEEEEEECSSSEEEEEEEEESEEEEEECTE.EEEEETTEEEEE-TT CS
     Cupin_2  3 velppGesapshrHpgedeffyVleGegeltvdge.eveleaGdsvyfpag 52
                +e +pG+s  +   +g  e+++V++G+++++ dge + e++aG ++yfp g
  KIR61474.1 50 WESDPGTSRWEFLTRG--EIIHVVSGRMTVQRDGEePAEVTAGSTAYFPIG 98
                5667777777666555..7************77666*************87 PP

>> EutQ  Ethanolamine utilisation protein EutQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     6e-06     0.022      72     146 ..      40     116 ..      28     118 .] 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6e-06
        EutQ  72 eeskrlgaGlmemkettfdw.tlnydeidyvieGrldvlidGrk.vvaeaGdviliPkgskiefsvtdeakflyvay 146
                 +e++ +  G+ e +  t  w +l+  ei  v+ Gr+ v  dG +     aG   + P g    ++v ++ + +yv++
  KIR61474.1  40 NEARTVISGVWESDPGTSRWeFLTRGEIIHVVSGRMTVQRDGEEpAEVTAGSTAYFPIGWCGTWTVHETLRKVYVVF 116
                 57778888999999999999779*******************97355789*************************98 PP

>> MBT  mbt repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.2e-05     0.043      19      56 ..      67     101 ..      64     109 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
         MBT  19 VvkvlgrrllvrfdgldesydfwcdadspdifPvGwce 56 
                 ++ v+++r+ v+ dg   ++   ++a+s+  fP+Gwc 
  KIR61474.1  67 IIHVVSGRMTVQRDG---EEPAEVTAGSTAYFPIGWCG 101
                 88999**********...788999*************5 PP

>> Ppnp  Pyrimidine/purine nucleoside phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.8e-05       0.1      32      66 ..      57      89 ..      30     106 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.8e-05
                ECEEEEESS-EEEEEEESEEEEEETT-SS-EEEET CS
        Ppnp 32 geyeFgtsakEvmevvsGelevklpgeeewktyka 66
                +++eF t+  E+++vvsG+++v+ +gee  +  +a
  KIR61474.1 57 SRWEFLTR-GEIIHVVSGRMTVQRDGEEPAEV-TA 89
                34888775.7***************9985443.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 883.40
//
Query:       KIR61475.1  [L=315]
Description: hypothetical protein TK50_28060 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-11   42.7   2.9    6.3e-11   42.1   2.9    1.3  1  Fer2           2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
      0.014   15.5   0.0       0.26   11.4   0.0    2.1  2  NAD_binding_6  Ferric reductase NAD binding domain
       0.15   12.7   0.0        4.7    7.9   0.0    2.4  1  NAD_binding_1  Oxidoreductase NAD-binding domain


Domain annotation for each model (and alignments):
>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   2.9   1.1e-14   6.3e-11       3      77 ..     234     306 ..     232     307 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 1.1e-14
                 TTTEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESCE.CTTSSSSTHHHHHTTEEEEGGGSEE CS
        Fer2   3 idgkevevevadgettlldaaeenggidipysCggggCgtClvevlegev.qsdetelegeeldegklrlaCqtiv 77 
                 +d+++vev+v+++++  ld++ e+ g++i  +C++g Cg+C ++vl+g v ++d   l+ +e+++g+  + C++++
  KIR61475.1 234 LDRSGVEVTVPADRS-ALDVLLEA-GVEIVNDCHEGICGSCETRVLAGAVdHRD-HVLTAQERAAGDCLMVCVSRA 306
                 678999999999999.99999999.*************************8666.677777778899999999876 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.4e-05      0.26       5      23 ..     110     128 ..     108     140 .. 0.86
   2 ?    1.9   0.0     0.035   2.1e+02     118     153 ..     170     200 ..     150     203 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.4e-05
                    xxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   5 llvagGiGitpfisilkdl 23 
                    l+vagGiGitp++++l + 
     KIR61475.1 110 LFVAGGIGITPLLPLLAEA 128
                    79*************9876 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.035
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 118 RPnlkevlkdiaskhknssvgvfvCGppklvkevkk 153
                    RP+l+++l  +          v+ CGp  l+  ++ 
     KIR61475.1 170 RPELRDLLDGL-----PPDALVYACGPSRLLAGLRA 200
                    88888888888.....77889*******99987775 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00079       4.7       1      46 [.     111     153 ..     111     200 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00079
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHH CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreel 46 
                    ++agG Gi+P++ +l ++ ++        l y  r+++ +++ +el
     KIR61475.1 111 FVAGGIGITPLLPLLAEARRR---GAASRLHYFGRSRRGMAFLDEL 153
                    799*******99998877665...3444555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2376.09
//
Query:       KIR61476.1  [L=442]
Description: dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-16   60.5   0.0    1.8e-16   59.8   0.0    1.3  1  Rieske           Rieske [2Fe-2S] domain
    2.9e-06   27.0   0.8    0.00059   19.4   0.2    2.9  2  Aromatic_hydrox  Homotrimeric ring hydroxylase
  ------ inclusion threshold ------
      0.019   15.0   0.1       0.04   13.9   0.1    1.5  1  Ring_hydroxyl_A  Ring hydroxylating alpha subunit (catalytic 


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0     3e-20   1.8e-16       2      86 ..      27     110 ..      26     122 .. 0.90

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 3e-20
                 EEEEEEGGGC-.TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEETTSBEEE-TTHHHEE CS
      Rieske   2 wvavakesdvp.egdpltvkvggeplvvlrdedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwaydadGkvikgPaprpla 86 
                 w+++a +s++p ++ +++++++ge+lv++r   + +  +s  C Hrg+ ls g++ e+g l+C +Hgw yda+G++++ Pa+ p  
  KIR61476.1  27 WQPAALVSEMPdDRPVKAIRMFGEDLVLFRR-ADGWGLISRFCAHRGVDLSYGRL-EDGGLRCLYHGWLYDAQGRCVEQPAEPPHS 110
                 999********5566999************5.88899******************.889**********************98844 PP

>> Aromatic_hydrox  Homotrimeric ring hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.2   9.8e-08   0.00059       1     182 [.     133     302 ..     133     309 .. 0.63
   2 ?    0.3   0.0     0.067     4e+02     192     234 ..     337     375 ..     325     382 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 9.8e-08
  Aromatic_hydrox   1 yvGdadpPPleadlPpqlldddivvlgkrrvikanWrlavengfdPghv.lihkdsqlviesdlalplGfkPvgeratevkvvvddtgpkGlln 93 
                      y+G +dpPP+ a     ++++d    + +   ++nW   +e g dP+hv ++h+   +v e+     +G +  +e        v+ tg k l++
       KIR61476.1 133 YLGAGDPPPFPAY--DCFTAPDEYTFAFKGLWECNWLQGLEGGIDPSHVsFLHR---FVGEDPRD-VYGQQF-SE-------EVEGTGTK-LSK 211
                      899******8543..35*******************************856665...44443322.233332.11.......12223333.444 PP

  Aromatic_hydrox  94 lytehtepvfeatildk..sare.gttyeaavgldvsiWlPgvlkvenfPypdmityelyvPidentyeyfellgkeaateeerkefedeye 182
                      l+ +h+ p +e + +++  +++   +  e+   ++v+  l     v++f   d +  +++vPid++ +++f++    a   ++++  ++++e
       KIR61476.1 212 LVGDHYRPDIEVESAEHglRVFAiRQLTEQLKHVRVTNLLFPNAFVVPFG-NDKVFTQWHVPIDDENHHWFMIFYDFAERTDKETLLRQRLE 302
                      45555555444333332002222122234555566665555556788999.5666779**************99887776666666666555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.067
  Aromatic_hydrox 192 dfndddlvareamqtfyeddkGwaeeklyeldavivawrklvs 234
                      d n+ d +a e+m    +     + e+l   d +++a r+l+ 
       KIR61476.1 337 DINVHDQWAVESMGRIQDR----TVERLGVSDRAVTANRRLLL 375
                      78999********987554....45889999999999888875 PP

>> Ring_hydroxyl_A  Ring hydroxylating alpha subunit (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   6.6e-06      0.04      14     159 ..     162     303 ..     136     309 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.6e-06
                      ESS-HHHHHHHHHHCCCCCTTTHHHHHHCS-TTS---EEEEE-SSSS-EEEEEES-THHHHHHHHHHHHHHHHSHHHHHHH.GCHHHHCEEEEE CS
  Ring_hydroxyl_A  14 ikaNWKlaaEnflEsYHvpvlHpellrallpeeletaeaaeyagfgphgsgsyvgqpgdlrlepaaavreldaeaaapele.gledeqdrgalh 106
                      +++NW   +E  ++  Hv++lH+     + + ++ ++++++ + +++ g+      +    +  ++   e  ++  ++++   l+++ ++    
       KIR61476.1 162 WECNWLQGLEGGIDPSHVSFLHRFV---GEDPRD-VYGQQFSEEVEGTGTKL---SKLVGDHYRPDIEVESAEHGLRVFAIrQLTEQLKHVRVT 248
                      89*********************97...333344.47888888888888777...333333333333334444444444334666666667779 PP

                      EEETTTEEEE...TTTTEEEEEEESSTT-EEEEEEEEEETT...S-HHHHHHHHH CS
  Ring_hydroxyl_A 107 ftifPnlsil.lapdhvvifrviPtgpettevelealvppdat.aseelkeelaa 159
                        +fPn ++  +++d v++ +  P + e + + + ++  +++t  +  l+++l++
       KIR61476.1 249 NLLFPNAFVVpFGNDKVFTQWHVPIDDENHHWFMIFYDFAERTdKETLLRQRLEN 303
                      99********9*************6666666555555444444144444665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3312.13
//
Query:       KIR61477.1  [L=353]
Description: hypothetical protein TK50_28075 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-26   91.7   5.8    3.5e-25   89.4   4.9    2.2  1  SBP_bac_8  Bacterial extracellular solute-binding protein
      3e-09   36.7   0.3    4.2e-09   36.2   0.3    1.2  1  SBP_bac_6  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   4.9   3.9e-29   3.5e-25       2     272 ..      58     312 ..      57     326 .. 0.83

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 3.9e-29
                 HHHHHHHH-TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH.-HHHHHTT--TS.----EEEEEEE-EEEE CS
   SBP_bac_8   2 lakefekktgvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnldd.ltdalaavgydgklygvPyasetpyvliy 99 
                 + ++f+k+tgvkv   +++s+ +++++ +   +g +++i v +   d +++ ++   +a l+d+   d  l+  ++++ +        + ++  +v +y
  KIR61477.1  58 YFDDFTKDTGVKVIS-EVESDAIANTMLT-GGKGAYDAIHVGL---DTVYQNKA--NIARLDDSVGRDTnLPENIRDYAFGT------FLVG--HVQAY 141
                 579**********96.6788889888888.5578886543222...33333332..46677776555554788888875544......4555..6999* PP

                 EHHHHHHS.---BHHHHHHHHHHHHHH-SEGG--...-GGGGGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE-S..--SSTTTTTSBSEEEE CS
   SBP_bac_8 100 nkdllekaedpktwdellaaakklkgkfglpdpa...sgwlqaallakdgksldddggkdglkealellkklkdngktydtgadavsefanGevaftin 195
                  ++ ++    pk w+++++ ++k++gk+g++ ++   +g  ++alla +g+ +d+  ++ +l++  ++l++l++n+++y ++++++++++++++a + +
  KIR61477.1 142 LTATFPNG-GPKNWADFWD-VAKFPGKRGWMGSPgsyDGACEIALLA-SGVTPDKL-YPLDLDRCTKKLDELRPNMVFYTSYPQIQQLLTSKTAAVVAG 236
                 ******97.**********.**********76542214577******.*******9.8***************************************** PP

                 -TTHHHHHH-TTTSEEEE--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---BS-S-TTT..HH CS
   SBP_bac_8 196 gswdiaaaqkagkklgaivpkqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektgyipvnksaal..sp 272
                 +s+++ a++++g ++++ +  +++++  + +a+p++a+n +   ++++k + +pe qaa+a+ tgy+p n++a    ++
  KIR61477.1 237 PSGQAVALKNQGVDVTISF--DQALIAPNVMAIPASAPNMKN-IQALAKVFNDPERQAAFAKLTGYGPGNPDAFKymDA 312
                 *******************..99******************7.*****************************9765533 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.3   4.7e-13   4.2e-09      60     234 ..     138     316 ..      89     325 .. 0.75

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 4.7e-13
   SBP_bac_6  60 vlavnkdrlkgrpvPksWaDLld.Peykgkvalpgnng..sdlfealllalyk......dfgedgvkkllrnlkanlhpaq.mvkaagslesgepavsv 148
                 v a+ +  +++   Pk WaD++d  ++ gk +  g +g   +++e++lla           ++d  +k+l +l+ n+  ++   ++ + l s+++av  
  KIR61477.1 138 VQAYLTATFPNGG-PKNWADFWDvAKFPGKRGWMGSPGsyDGACEIALLASGVtpdklyPLDLDRCTKKLDELRPNMVFYTsYPQIQQLLTSKTAAVVA 235
                 4444444444443.9*******7589*99999888888787899999988888899999999*******************888888888999955555 PP

   SBP_bac_6 149 vpyffadilpekkkgknlkvvwPedGalvspifmlvkkg.kkkelakafidfllspevqailakaggvfPvvtnpavlnelpegakl 234
                 +p   a +l+++     ++v++  d al+ p++m+++++ ++ +  +a++  + +pe qa++ak +g + +  np++ + +  + k 
  KIR61477.1 236 GPSGQAVALKNQ----GVDVTISFDQALIAPNVMAIPASaPNMKNIQALAKVFNDPERQAAFAKLTG-YGP-GNPDAFKYMDAETKA 316
                 555555555555....57888777889***************************************9.555.566655555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2240.60
//
Query:       KIR61478.1  [L=238]
Description: hypothetical protein TK50_28080 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-37  127.2   0.0    5.9e-37  126.9   0.0    1.1  1  DUF1989   Domain of unknown function (DUF1989)


Domain annotation for each model (and alignments):
>> DUF1989  Domain of unknown function (DUF1989)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.9   0.0   3.3e-41   5.9e-37       3     167 .]      11     182 ..       9     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 126.9 bits;  conditional E-value: 3.3e-41
     DUF1989   3 iparsgravevkaGqvlriidleGkqvvdllafnaddprerlsaadTrklqgsahlttgdrlysnlgrplltiveDtvgrHDtlggacdaevnellyg. 100
                 +p+++++++++++G++lr+  l  ++v+++l+++add +erl+++dT+k+q+sa + + ++l+s++gr+l++++  ++ +HD++ g +  +  + ++g 
  KIR61478.1  11 VPGGAAWSLTLARGSTLRLEALGADAVASMLLYAADDRWERLNVPDTLKAQMSARIHPPMVLMSDMGRALASVTGSSSDWHDAITGHSVDADLA-RFGp 108
                 99************************************************************************************99888887.5666 PP

     DUF1989 101 .....egkeyhrnCrdnllralakyglterdvpdvlNlFmnvgv..dedgrlfmeespskpGdyvelraemDll 167
                      +++ + r+ r+ ll +l ++gl+erd+++ +N+F +v+   de g+l + +++ ++Gd v lrae+Dll
  KIR61478.1 109 sdygrDRNGWRRSARSLLLDELYAHGLGERDLHATVNWFVKVRPggDERGTLGYVPGHTTAGDWVCLRAEQDLL 182
                 788899999*********************************862266899*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1634.16
//
Query:       KIR61479.1  [L=207]
Description: urea carboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-60  204.0   0.0    1.4e-60  203.8   0.0    1.0  1  DUF1989   Domain of unknown function (DUF1989)


Domain annotation for each model (and alignments):
>> DUF1989  Domain of unknown function (DUF1989)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.8   0.0   7.7e-65   1.4e-60       2     167 .]      14     179 ..      13     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 203.8 bits;  conditional E-value: 7.7e-65
     DUF1989   2 tiparsgravevkaGqvlriidleGkqvvdllafnaddprerlsaadTrklqgsahlttgdrlysnlgrplltiveDtvgrHDtlggacdaevnellyg 100
                 t++a++g+  e++aG +lri+dl+G+q+vd+l+++a+d+ +r+sa dT+++qgsa+lttg++l s +  pl+tiv+Dt+grHDtlggac +e+n ++yg
  KIR61479.1  14 TVAAGDGWLGEIPAGGRLRIVDLHGNQAVDTLLYDARDTANRYSAVDTVRAQGSAYLTTGSVLRSVRLDPLATIVDDTCGRHDTLGGACAKESNVVRYG 112
                 899************************************************************************************************ PP

     DUF1989 101 egkeyhrnCrdnllralakyglterdvpdvlNlFmnvgvdedgrlfmeespskpGdyvelraemDll 167
                 e+++++++Cr+ +lr + + gl++rd+++++N+Fmnv+++e g l++e+++s+pG++velrae D+l
  KIR61479.1 113 EHTRHQHACRSTFLRYAVAGGLDKRDLTHNINFFMNVPLTEAGGLTFEDGVSAPGKHVELRAERDIL 179
                 99***************9***********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1556.28
//
Query:       KIR61480.1  [L=199]
Description: hypothetical protein TK50_28095 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-24   85.4  32.9    3.7e-24   85.4  32.9    1.6  2  DUF5134   Domain of unknown function (DUF5134)


Domain annotation for each model (and alignments):
>> DUF5134  Domain of unknown function (DUF5134)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1     0.045   8.1e+02     105     136 ..       6      42 ..       2      45 .. 0.50
   2 !   85.4  32.9     2e-28   3.7e-24       3     151 .]      40     198 ..      37     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.045
     DUF5134 105 tgvlavyFaaaalvwlarllpapapa.....elarac 136
                  + +++++a++a + + rll++ a++     +++r c
  KIR61480.1   6 RWPMTLALAVVAPYFASRLLRPAAGGgparpARHRGC 42 
                 5555666666666666677663222233333555555 PP

  == domain 2  score: 85.4 bits;  conditional E-value: 2e-28
     DUF5134   3 rvsavlhllMavgMaaMawpagvalpsagqlavvfalaalwflvlavvrrr.ataarrlahlyhavmmlAMvyMaaamalaaggghsghaaagasmpgg 100
                 r  +++hllMav+M+aM+w   va+p a++ ++vfa aalwf+vla++++       r++ +y av m+AM++Ma   ++++gg   gh++ g + p +
  KIR61480.1  40 RGCDAAHLLMAVAMTAMVWT--VAVPGAMW-VAVFAPAALWFVVLAARSPGrLPHGSRAVTWYFAVSMAAMAWMAWPNGHPGGG---GHHG-GPAGPPW 131
                 66789**************9..77889998.****************98887556678889**************777333333...3332.2334555 PP

     DUF5134 101 .vplvtgvlavyFaaaalvwlarllp...............apapa...elaracrlvMalGMaaMllal 151
                   ++v+++l  y+++ a +w+ r l+               a   +   +++ +c+++M++ M +Mlla+
  KIR61480.1 132 wPSVVSLALGGYLLLTAGWWAGRGLRltprwpdqagavaspA---GptvRVEGLCHATMGAVMGLMLLAM 198
                 266777788888888888998766666669988877666443...1566*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1419.97
//
Query:       KIR61481.1  [L=502]
Description: Htaa domain-containing protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-41  142.3   2.0    1.8e-41  142.3   2.0    1.8  2  HtaA      Htaa
    9.2e-05   22.6   0.1    0.00079   19.5   0.0    2.5  1  WxL       WxL domain surface cell wall-binding
  ------ inclusion threshold ------
      0.039   14.0   0.0       0.18   11.9   0.0    2.2  1  TIG       IPT/TIG domain


Domain annotation for each model (and alignments):
>> HtaA  Htaa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.3   2.0   3.1e-45   1.8e-41       2     160 .]      44     203 ..      43     203 .. 0.96
   2 ?   -1.6   0.0      0.58   3.4e+03      83      83 ..     356     356 ..     294     419 .. 0.61

  Alignments for each domain:
  == domain 1  score: 142.3 bits;  conditional E-value: 3.1e-45
        HtaA   2 gtldWGvkeSFrsYvtgpiakgswelsggakankggafqFpvasgsvdkdtkkgeirfkGsvhftghngaLdltlsnpkievsgetgtLladvsskdke 100
                 g+l+WG+k+SFrsYv+ +  +  +++s+ga+ n++g+f+Fp++ g++d+ t++ +++++G+v+f++ ++++++tl+np++ vsg+t+ L adv+   ++
  KIR61481.1  44 GSLTWGFKSSFRSYVNTGNGNPPIAASNGASINSDGTFTFPAKGGTYDAGTGAINAEYGGTVVFSYPAHMFTITLANPTVAVSGGTAALKADVDL-ATT 141
                 99*************98889999**********99***********************************************************7.455 PP

        HtaA 101 ggekvtkedvalatldlsgakv..kdgsvslsgapatltaeGaeafagfYeaGealDpltls 160
                 ++e+v+ +++++at++++ga++  ++g+v+ ++++atltaeGa+af+gfY aG alDpl+++
  KIR61481.1 142 AAEPVSVRQATIATIAVTGANPggSGGTVTATDLAATLTAEGASAFNGFYAAGAALDPLSFT 203
                 5799********************************************************97 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.58
        HtaA  83 v 83 
                 +
  KIR61481.1 356 A 356
                 2 PP

>> WxL  WxL domain surface cell wall-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.3e-07   0.00079      81     208 ..     383     501 ..     368     502 .] 0.71

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.3e-07
         WxL  81 eekkpnyvqVtDkRgtnaGWtLsvkqsqfkktknkeLkGAtitlkngevasnseeaskaatsstitlklttggtaqevmtAakgqGaGtwsvsfgsqet 179
                  +   n + V D RgtnaGW+L  + s+f+++++ +++  ++      v s+s  ++        +    ++g  ++ +tAa g G Gt     +s++ 
  KIR61481.1 383 ASGALNTATVADLRGTNAGWSLVGQVSDFTSAGGGSIDADNLGW----VPSASVVTDG------LAG---APGVVTPGATAAPGAGLGTARALCTSASG 468
                 45566889*********************999888888777777....3333333322......223...45666666677777777777766666655 PP

         WxL 180 ea......ntavkLtvpastakaattYtttLtWtL 208
                 ++       ++ +L +pas +  a++Yt+ Lt tL
  KIR61481.1 469 ASngtfgcGAQLNLGIPASAP--AGDYTAVLTLTL 501
                 556667777889999999876..566999998777 PP

>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     3e-05      0.18       5      38 ..     218     254 ..     217     302 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3e-05
         TIG   5 sisPnsgsasgGttititGtnF...gtnssdssvtig 38 
                 ++sP++g+  +G tit+ G++F    + +  ++v +g
  KIR61481.1 218 AVSPSTGVDPAGATITVEGSGFdpeANGAAGVYVSFG 254
                 68999999999***********988888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3428.15
//
Query:       KIR61482.1  [L=277]
Description: hypothetical protein TK50_28115 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.5e-05   22.5   2.3    8.5e-05   22.5   2.3    3.5  4  Neocarzinostat  Neocarzinostatin family
  ------ inclusion threshold ------
      0.064   13.5   1.2       0.12   12.6   1.2    1.4  1  DUF4381         Domain of unknown function (DUF4381)


Domain annotation for each model (and alignments):
>> Neocarzinostat  Neocarzinostatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   2.3   9.5e-09   8.5e-05       1      56 [.      38      93 ..      38     103 .. 0.78
   2 !   10.0   0.1   7.3e-05      0.66      68      94 ..     119     145 ..     110     164 .. 0.84
   3 ?   -0.5   0.7      0.14   1.2e+03      63     108 ..     158     207 ..     151     209 .. 0.53
   4 ?   -0.9   1.3      0.18   1.6e+03      36      62 ..     209     237 ..     197     251 .. 0.61

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 9.5e-09
  Neocarzinostat  1 lsaspstgLs.dgdvvtvsgtGftagstlalgeCvavapggvaCnkaagavvtadas 56
                    l+++ps+g++ +g++vtvsgtG+     + +  Cv +  g+ +    +ga++ ++++
      KIR61482.1 38 LTVTPSSGIArSGASVTVSGTGYDVTKGIYVAYCVDNGAGAAPSPCGGGADT-TGST 93
                    689*****9748************************9776665555555555.3333 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 7.3e-05
  Neocarzinostat  68 sFegvlsdGssigavdcatvacviala 94 
                     sF  +l+ G+ ig vdc+   cv+a  
      KIR61482.1 119 SFRVTLTVGTRIGDVDCTVRRCVVATR 145
                     78899999*****************32 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.14
  Neocarzinostat  63 ltvaksFegv...lsdGssigavdca.tvacvialadasndaaegagvsl 108
                     + v  +F +    + +G++ ++  +a t +++ a   ++  aa++a++++
      KIR61482.1 158 VRVPITFAAAatpARTGAAPATTGTAgTGGTGPAARATAPPAATTAAAPV 207
                     56666666662223355554444433133444556666667777777766 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.18
  Neocarzinostat  36 vapggvaCnkaagavvtadasGki..sas 62 
                     +ap+g+a  +a+ga+ +a   G++  +a+
      KIR61482.1 209 AAPAGSAAPAATGADAVAAPGGTAdpAAQ 237
                     55667777777777776666666532333 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.2   1.4e-05      0.12      12      46 ..     241     275 ..     234     276 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.4e-05
     DUF4381  12 vswwPpapGwwlllaalllllllvlalwllrrrkr 46 
                 vs    + Gwwl +++l ll+l +la +++rrrk+
  KIR61482.1 241 VSAASGTGGWWLAALVLPLLGLTLLAGLRRRRRKA 275
                 56666788******666668888888888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1977.02
//
Query:       KIR61483.1  [L=365]
Description: hemin ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-90  303.0  34.0    2.5e-90  302.7  34.0    1.1  1  FecCD     FecCD transport family


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.7  34.0   1.4e-94   2.5e-90       2     312 .]      37     356 ..      31     356 .. 0.98

  Alignments for each domain:
  == domain 1  score: 302.7 bits;  conditional E-value: 1.4e-94
       FecCD   2 lllllllslllgavkispsevfeallgka.........dsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlal 91 
                 lll+ ll+   g+v i p+ev+ ++l++           +  ++ ++ +r+prv++a++vGaaL+++Ga++Q+v+ NpLa+P+++G+s+gaalga+la+
  KIR61483.1  37 LLLVALLAAGRGQVAIAPAEVLGSVLHRLgldvgprpaAPHGESALWLVRFPRVALAAVVGAALGCSGAVMQGVFGNPLAEPGVIGVSAGAALGAALAI 135
                 56778888999***************999999*999997777789****************************************************** PP

       FecCD  92 llllgslslfalplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllll 190
                 +++++ l+ +++p+aaf+g+l++++lv++lar++++++ ++l+L+G+av+a+++a++ ll+++++e+ +++i fw lGsl++asws v l+++ l+++l
  KIR61483.1 136 VTGVTVLGGWTVPAAAFAGGLATTWLVYTLARSGGRTEVVTLVLTGVAVNAVAGAAIGLLMFVADESGVQAIAFWNLGSLAQASWSAVGLAAPCLAVGL 234
                 *************************************************************************************************** PP

       FecCD 191 llllllarkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsp 289
                 +++l+ ar+ldllalg++ A++lGv+ver+r+ +++++all a+ava++G+i+F+GL+vPh++r+++g+ hr llp+sal Ga+++++adl+ar+l+  
  KIR61483.1 235 AATLADARRLDLLALGERSARHLGVDVERLRVRMIVVTALLGAAAVAFTGIISFIGLVVPHLVRMVAGPGHRLLLPASALGGAIVVVAADLAARTLVDY 333
                 *************************************************************************************************** PP

       FecCD 290 telpvgivtaliGapffiylllr 312
                 +elp+g++ta++G+p f++ll+r
  KIR61483.1 334 QELPLGVLTAVVGGPAFFWLLRR 356
                 *********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2492.99
//
Query:       KIR61484.1  [L=670]
Description: NADH:flavin oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-66  224.6   0.0    2.9e-66  224.1   0.0    1.2  1  Oxidored_FMN   NADH:flavin oxidoreductase / NADH oxidase fami
    4.8e-09   35.9   3.1    2.5e-08   33.5   3.1    2.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    6.5e-09   35.9   6.9    3.1e-06   27.3   1.6    3.8  3  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    2.7e-07   31.1   0.2      0.048   14.2   0.3    3.7  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    6.4e-06   25.8   3.9    6.4e-06   25.8   3.9    2.4  3  FAD_oxidored   FAD dependent oxidoreductase
    8.8e-05   21.4   0.6    0.00016   20.6   0.6    1.3  1  HI0933_like    HI0933-like protein
     0.0047   17.3   1.0       0.13   12.7   0.1    2.9  2  Toprim_3       Toprim domain
  ------ inclusion threshold ------
       0.01   15.0   0.8       0.01   15.0   0.8    1.7  2  GIDA           Glucose inhibited division protein A
       0.02   14.2   5.8      0.033   13.5   3.8    2.3  2  Amino_oxidase  Flavin containing amine oxidoreductase
      0.024   13.9   0.5       0.05   12.9   0.5    1.5  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.085   12.7   1.8        2.9    7.7   0.0    2.4  2  DFP            DNA / pantothenate metabolism flavoprotein
       0.18   11.0   0.8        1.1    8.4   0.2    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
       0.71    9.7   4.2        4.4    7.2   0.2    3.0  4  DUF2345        Uncharacterized protein conserved in bacteria 


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.1   0.0   2.1e-69   2.9e-66       2     341 ..       9     341 ..       8     342 .. 0.86

  Alignments for each domain:
  == domain 1  score: 224.1 bits;  conditional E-value: 2.1e-69
                   CCS-EEETTEEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEEE CS
  Oxidored_FMN   2 LFkPikignmtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvvv 98 
                   L  P+ i + tL+nR+ ++ +t   +l+++  ++ ++a+y ++ra+++ +liitea+ v p+s g + + g +++  +++++ +t+avhe+g+ ++ 
    KIR61484.1   9 LLSPVRIASLTLRNRVFVPGHTTNFGLHNE--PTARLAAYHAERARGGAGLIITEAIRVHPTSAGRSISLGAFTDACVPAYQRVTDAVHEHGARIFA 103
                   789********************9999999..8999************************************************************* PP

                   EEE--GGGS..SCSTCEC..SS.ESSSSSTTT-.S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT----STTS CS
  Oxidored_FMN  99 qlwhlGreakseyladqevdspsdpvaldaqeeesaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspksnkrtDeyg 195
                   q++h+Gr+a+ +   ++     s pva  a  +     v ++++  ++ + ++++f+ AA+r   AgfDg e+h+ +G+Ll+qFlsp++n+r D yg
    KIR61484.1 104 QIMHAGRQANGDATRTAA--WSSSPVAWAAGAH-----V-PHAMGRRDLATVVDAFATAARRMWRAGFDGLEVHAGHGHLLQQFLSPHTNRRDDDYG 192
                   *********988888888..3334678888744.....4.89******************************************************* PP

                   SSHHHHHHHHHHHHHHHHHHH-SSS.EEEEEECE--STTS--HHHHHHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCC...........T CS
  Oxidored_FMN 196 GslenRarFllevvdaVkeavgeer.vgyRlSpedvvekgldfaetaqkivllkelekrlkdgkklalvhaaeprkrgagsvrte...........q 280
                   G l nR+r ++ev+daV  a   +  vg R+S+++    gld   +   +++++ l  + +    la+vh+   +  g+ s  t+            
    KIR61484.1 193 GGLANRMRLTREVLDAVHAA--TDLpVGLRISADEFLPGGLDPDAM---VEIVARLRADHP----LAYVHVSHSAYHGSWSLATQmadmsfghapfR 280
                   *****************999..8888*******9988877765433...555555555444....55555555444444333333222222224423 PP

                   THHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTCG CS
  Oxidored_FMN 281 ekntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkglpl 341
                   ++ + f +e  + p+++v r ++ ++aae  a geadLv+++R+ +adp lv+k+++g++ 
    KIR61484.1 281 HHAARFSREFPDLPVLAVCRLDSLPEAAELIAAGEADLVGLARPHIADPHLVRKAAEGRQH 341
                   4666******************************************************986 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   3.1   1.8e-11   2.5e-08       2     272 ..     389     646 ..     388     669 .. 0.69

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 1.8e-11
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkkegdeekia 99 
                  +v+v+ gGpAGlaaa+ +++ag++vtl e     l+g++ ++  + g ++ +          + ++   + + +v+i  g+ +v+    +        
   KIR61484.1 389 RVLVVDGGPAGLAAATAARRAGHRVTLAE-AADDLGGQVRVAARVPGRERLGLL--------TRDLAAEAHAAGVEILLGH-RVTAAGVRA-----GG 471
                  799*************************5.444567767665555555444432........2234444444589999999.888866554.....46 PP

                  ESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEE...S-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 100 ydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvv...GgGyiGvElAaalaklgkevtlveardrllraldkelsaaleeale 194
                  yd +v+AtGs+p ++ +pG  + v +l   ++ ++ l        + vv    g   ++ +A ala+ g++v+lv     l        + al ++++
   KIR61484.1 472 YDDVVVATGSRPARCALPGG-PPVLDL---WQAVDLLDAPGAGTGAYVVlddDGTWAASSVAEALARRGARVHLVSPTASLAARITTYSRLALLRRFT 565
                  *******************9.888777...555555555444433344435558999************************988999999999***** PP

                  HTTEEEEESCEEEEEEETTEEEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EE.EETTEEE--TTS.BESSTTEE CS
                  xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.xxxxxxxx RF
  Pyr_redox_2 195 keGvevklgtsvkeidgngekle.vvledgeeidadlvvvavGvrpstelleeklglel.derggivvdefl.rtnvpgiy 272
                  + Gv v+   ++  + g++  l+    +   +++  + vv +G  + +++l ++l  +   +r  +v d +  rt+ + +y
   KIR61484.1 566 ELGVVVHPLRTPRVVGGDTIALTgPLAGADVTVAGVTAVVDAGAPAADDTLFRHLDAAPdGPRIHLVGDANApRTTLEAVY 646
                  *******99999666666667777444444446666777777777777776533333331333333444444556666666 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.24   3.3e+02      39      55 ..      89     105 ..      80     114 .. 0.80
   2 !   27.3   1.6   2.2e-09   3.1e-06       4      42 ..     395     434 ..     392     453 .. 0.85
   3 !    7.3   0.1     0.004       5.6       7      40 ..     524     557 ..     521     576 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.24
                    CETTCEECTS---EEET CS
  NAD_binding_8  39 evpgvrvdygahifhgs 55 
                    +v + ++++ga+if+++
     KIR61484.1  89 RVTDAVHEHGARIFAQI 105
                    446789********874 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 2.2e-09
                    -SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE.TT CS
  NAD_binding_8   4 aGlsGlvaAylLakagfdvlllekrdrlGGraasyev.pg 42 
                    +G +Gl+aA ++++ag++v+l e++d+lGG+++ + + pg
     KIR61484.1 395 GGPAGLAAATAARRAGHRVTLAEAADDLGGQVRVAARvPG 434
                    8******************************986644465 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.004
                    HHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE CS
  NAD_binding_8   7 sGlvaAylLakagfdvlllekrdrlGGraasyev 40 
                    ++++ A +La++g++v+l+    +l  r+++y++
     KIR61484.1 524 AASSVAEALARRGARVHLVSPTASLAARITTYSR 557
                    78999*************************9976 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       4.7   6.4e+03      31      52 ..     223     245 ..     219     247 .. 0.86
   2 !   14.2   0.3   3.5e-05     0.048       1      70 [.     389     469 ..     389     480 .. 0.66
   3 !   11.0   0.0   0.00035      0.48      11      67 ..     525     581 ..     521     588 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.7
                 SSSSS.TTSSHHHHHHHHHHHHH CS
   Pyr_redox  31 sdkll.rllDeeaskilqeklek 52 
                 +d++l  +lD++a  ++  +l++
  KIR61484.1 223 ADEFLpGGLDPDAMVEIVARLRA 245
                 68999999****99999988875 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.5e-05
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.......TTSSHHHHHHHHHHHHHT....TEEEECSEEEEEEEEET CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.......rllDeeaskilqeklekn....gievllntkveeiegse 70 
                 +v+vv gG  gl +A+a+++ g++Vt+ e++d l        r+ ++e   +l++ l ++    g+e+ll+++v++    +
  KIR61484.1 389 RVLVVDGGPAGLAAATAARRAGHRVTLAEAADDLGgqvrvaaRVPGRERLGLLTRDLAAEahaaGVEILLGHRVTAAGVRA 469
                 699999**************************9983321222222333333444444444456677777777776666555 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00035
                 HHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEE CS
   Pyr_redox  11 glElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeie 67 
                 +  +A+ala+ g++V++v     l   +    + +l ++++++g+ v+  +++  + 
  KIR61484.1 525 ASSVAEALARRGARVHLVSPTASLAARITTYSRLALLRRFTELGVVVHPLRTPRVVG 581
                 6779*********************99********************9877776655 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   3.9   4.6e-09   6.4e-06       2      39 ..     390     427 ..     389     437 .. 0.92
   2 ?   -2.3   0.0       1.6   2.2e+03      98     126 ..     450     478 ..     436     485 .. 0.77
   3 ?   -0.6   0.3      0.48   6.6e+02       8      33 ..     522     547 ..     521     548 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 4.6e-09
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGllt 39 
                   v+Vv GgpaG+aAA aA raG +v L e  + lGG++ 
    KIR61484.1 390 VLVVDGGPAGLAAATAARRAGHRVTLAEAADDLGGQVR 427
                   89*********************************975 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
  FAD_oxidored  98 aeagvtvllntrlvevekegkriesvtve 126
                   + agv++ll++r++++ ++ +  + v+v+
    KIR61484.1 450 HAAGVEILLGHRVTAAGVRAGGYDDVVVA 478
                   6789*********9999986677777775 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.48
  FAD_oxidored   8 gpaGvaAAiaAaraGakvlLveergv 33 
                   + a    A a ar+Ga+v Lv+++  
    KIR61484.1 522 TWAASSVAEALARRGARVHLVSPTAS 547
                   55666667789***********9875 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.6   1.1e-07   0.00016       2      42 ..     389     429 ..     388     432 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.1e-07
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHC CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKilis 42 
                  +v+v+ gG+AGl aA +a+++g+rV+l e+a+ lg  ++++
   KIR61484.1 389 RVLVVDGGPAGLAAATAARRAGHRVTLAEAADDLGGQVRVA 429
                  699*******************************9988875 PP

>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.22   3.1e+02      36      69 ..     376     412 ..     353     429 .. 0.73
   2 !   12.7   0.1   9.3e-05      0.13      33      81 ..     502     546 ..     495     551 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.22
    Toprim_3  36 awpe.rgkrv....viaaDnDaandGreaaeklaerlea 69 
                 +w++ r++ v    v++ D+++a  G +aa ++  + ++
  KIR61484.1 376 EWASaRRRPVparrVLVVDGGPA--GLAAATAARRAGHR 412
                 566556666666778999*****..99999988877665 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 9.3e-05
    Toprim_3  33 kaiawpergkrvviaaDnDaandGreaaeklaerleaagieavllepae 81 
                 + ++ p  g+  ++++D+D++    +aa  +ae+l+++g  ++l++p++
  KIR61484.1 502 DLLDAPGAGTGAYVVLDDDGT----WAASSVAEALARRGARVHLVSPTA 546
                 556777888899*******88....*********************965 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.8   7.3e-06      0.01       2      36 ..     390     423 ..     389     447 .. 0.84
   2 ?   -1.9   0.2      0.94   1.3e+03       9      31 ..     523     545 ..     521     556 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.3e-06
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLithkldtia 36 
                 v V+ gG AG++AA aa r+G++v+L  +  d+++
  KIR61484.1 390 VLVVDGGPAGLAAATAARRAGHRVTLA-EAADDLG 423
                 89************************8.5555555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.94
                 HHHHHHHHHHHHTT--EEEEES- CS
        GIDA   9 hAGceAAlaaarlGakvlLithk 31 
                 +A +  A a+ar+Ga+v L+ + 
  KIR61484.1 523 WAASSVAEALARRGARVHLVSPT 545
                 566778999**********9543 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.8   2.4e-05     0.033       2      31 ..     398     427 ..     397     432 .. 0.94
   2 ?   -0.9   0.0      0.54   7.4e+02     213     236 ..     442     467 ..     431     541 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.4e-05
                    HHHHHHHHHHHTTEEEEEEESSSSSBTTS- CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGGRir 31 
                    aGLaaA+   +aG++Vt+ Ea d +GG +r
     KIR61484.1 398 AGLAAATAARRAGHRVTLAEAADDLGGQVR 427
                    9**************************997 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.54
                    HHHHHH..TTTTEEEETSEEEEEEEE CS
  Amino_oxidase 213 pealae..elrgldirlntrVkeikr 236
                     + la+  ++ g++i+l++rV+    
     KIR61484.1 442 TRDLAAeaHAAGVEILLGHRVTAAGV 467
                    55666666677777777777775444 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.5   3.7e-05      0.05      26      63 ..     385     422 ..     377     448 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.7e-05
                  B---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHH CS
  AlaDh_PNT_C  26 vepakvlviGgGvaGlqAiatakglgakVtvlDvrpar 63 
                  v + +vlv+ gG aGl+A+ +a++ g +Vt+ +   + 
   KIR61484.1 385 VPARRVLVVDGGPAGLAAATAARRAGHRVTLAEAADDL 422
                  56789*************************99877665 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.4     0.033        46      29      54 ..     396     421 ..     389     454 .. 0.86
   2 ?    7.7   0.0    0.0021       2.9      33      56 ..     526     549 ..     523     567 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.033
                 -HHHHHHHHHHHHTT-EEEEEE-S-S CS
         DFP  29 GkmGyalAeaaaarGaeVtlvsgpvs 54 
                 G  G+a A aa+++G++Vtl  +  +
  KIR61484.1 396 GPAGLAAATAARRAGHRVTLAEAADD 421
                 7789****************987755 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0021
                 HHHHHHHHHTT-EEEEEE-S-SS- CS
         DFP  33 yalAeaaaarGaeVtlvsgpvsle 56 
                  ++Aea+a+rGa+V+lvs   sl+
  KIR61484.1 526 SSVAEALARRGARVHLVSPTASLA 549
                 579**************9887665 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2   0.00082       1.1       2      26 ..     392     415 ..     391     427 .. 0.84
   2 ?    0.5   0.0       0.2   2.8e+02     176     207 ..     525     556 ..     473     563 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00082
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledyli 26 
                  ++ +GPaGlaaa+++++ag  +++ 
   KIR61484.1 392 VVDGGPAGLAAATAARRAGH-RVTL 415
                  788***************98.5555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.2
  Pyr_redox_3 176 avDaAlelvrkgaeVtvvtrgseiekeesdps 207
                  a  +A  l+r+ga+V++v +++++ ++ +++s
   KIR61484.1 525 ASSVAEALARRGARVHLVSPTASLAARITTYS 556
                  556788899**********9999988877666 PP

>> DUF2345  Uncharacterized protein conserved in bacteria (DUF2345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.2    0.0032       4.4      40      93 ..      68     121 ..      57     124 .. 0.92
   2 ?    3.3   0.2     0.049        68      34      80 ..     123     175 ..     117     181 .. 0.87
   3 ?   -2.5   0.0         3   4.1e+03       7      26 ..     324     343 ..     322     350 .. 0.83
   4 ?   -3.0   0.0       4.3   5.9e+03      17      29 ..     395     407 ..     388     452 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0032
     DUF2345  40 ltagqdtqlaagkrllaaageaislfaqkagikliAakgkveiqAqsdalellA 93 
                 + ag++++l a  +  + a +++   +++ g +++A+  +   qA+ da++ +A
  KIR61484.1  68 TSAGRSISLGAFTDACVPAYQRVTDAVHEHGARIFAQIMHAGRQANGDATRTAA 121
                 689**********************************************99988 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.049
     DUF2345  34 agenlaltagqdtqlaagkrllaaageaislfaq......kagikliAakgkv 80 
                 +++ +a++ag+++ +a g+r la++ +a +  a+       +g++++A++g++
  KIR61484.1 123 SSSPVAWAAGAHVPHAMGRRDLATVVDAFATAARrmwragFDGLEVHAGHGHL 175
                 56678999***********************9999999888999999999986 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3
     DUF2345   7 pelaqpllvlsapaGialtt 26 
                 p+ a+p+lv +a +G +  t
  KIR61484.1 324 PHIADPHLVRKAAEGRQHET 343
                 7899*********9977666 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 4.3
     DUF2345  17 sapaGialttpqs 29 
                  +paG+a++t++ 
  KIR61484.1 395 GGPAGLAAATAAR 407
                 5688888888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 4433.41
//
Query:       KIR61485.1  [L=358]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-18   67.6   0.0      2e-18   66.8   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    2.3e-18   66.6   0.0    3.7e-18   66.0   0.0    1.3  1  Methyltransf_11  Methyltransferase domain
    1.9e-10   40.7   0.0    2.9e-10   40.1   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    2.7e-09   37.1   0.0    3.9e-09   36.5   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    5.3e-09   36.7   0.0    9.2e-09   36.0   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    9.4e-09   34.9   0.0    1.3e-08   34.5   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    1.9e-08   34.1   0.0      3e-08   33.4   0.0    1.2  1  MTS              Methyltransferase small domain
     0.0015   17.9   0.0     0.0023   17.3   0.0    1.2  1  Methyltransf_2   O-methyltransferase domain
      0.003   17.1   0.0     0.0087   15.5   0.0    1.6  2  Methyltransf_4   Putative methyltransferase
     0.0037   17.5   0.2     0.0075   16.5   0.2    1.5  1  DUF2993          Protein of unknown function (DUF2993)
      0.004   17.0   0.0      0.016   15.1   0.0    1.8  1  Methyltransf_8   Hypothetical methyltransferase
     0.0071   15.7   0.0     0.0091   15.3   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.21   11.5   0.0    1.2  1  Methyltransf_18  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   1.5e-21     2e-18       1      97 []     174     270 ..     174     270 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 1.5e-21
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      v+d+GcG G+ t+ l  r+++a+v+gvD+++  l+ a+ +ae++gl ++++q+d ++  ++d+s+D+v+ +++lh ++ e +++++ e+ar+Lk
       KIR61485.1 174 VVDIGCGFGKSTRPLVGRYPSAQVIGVDLAAPGLRLAHVEAEAQGLAIDYRQADGRATGLDDASCDVVTGTMVLHEMPAEAIRETIVEAARLLK 267
                      89*****************99*************************************************988********************* PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       KIR61485.1 268 PGG 270
                      **9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   2.7e-21   3.7e-18       1      94 [.     175     272 ..     175     274 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 2.7e-21
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvLkp 90 
                      +d+GcG G+ +++l  r+  a+v+gvDl++  l+la+ +a+ +gl +++++ad + + + d+s+D+v+ ++vlh +  e  ++++ e+aR+Lkp
       KIR61485.1 175 VDIGCGFGKSTRPLVGRYpsAQVIGVDLAAPGLRLAHVEAEAQGLAIDYRQADGRATGLDDASCDVVTGTMVLHEMpaEAIRETIVEAARLLKP 268
                      59*************7778*********************************************************999*************** PP

                      EEEE CS
  Methyltransf_11  91 gGll 94 
                      gG l
       KIR61485.1 269 GGAL 272
                      **98 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   2.1e-13   2.9e-10       4     124 ..     171     291 ..     169     320 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 2.1e-13
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl..naladpdkile 95 
                      ++rv+D+GCG G+ t  l  + +p a+v+G+D  +  ++lA  +a+ +gl  +  +q+d  +    l d++ D+++   vl  +   +  +++ 
       KIR61485.1 171 ATRVVDIGCGFGKSTRPLVGR-YPSAQVIGVDLAAPGLRLAHVEAEAQGLA-IDYRQADGRATG--LDDASCDVVTGTMVLheMPAEAIRETIV 260
                      689****************55.89**************************8.888888888877..679************5555556679999 PP

  Methyltransf_31  96 eiervlkpggilliedprllaelp..akvee 124
                      e+ r+lkpgg+l   +++l  + +  a v+e
       KIR61485.1 261 EAARLLKPGGALRFLEFQLTGDPLrdATVYE 291
                      ***************9993322223433333 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   2.9e-12   3.9e-09      13     142 ..     161     300 ..     149     322 .. 0.63

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 2.9e-12
  Methyltransf_23  13 lerllpklraggrvLdiGcGtGillevl..rengfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqg..........kfdlIvlrevleh 94 
                      +e +lp l+   rv+diGcG G  ++ l  r+  ++v+gvDl      +a   +     q  +++ ++  +          ++d+++ ++vl+ 
       KIR61485.1 161 TETALPDLPGATRVVDIGCGFGKSTRPLvgRYPSAQVIGVDLAAPGLRLA---HVEAEAQGLAIDYRQ--AdgratglddaSCDVVTGTMVLHE 249
                      445556677777**********7777775444455*******76555544...222222222223333..13355666666************* PP

  Methyltransf_23  95 vp..dppellrqiatllkpgGylllseplaslk.edrllldwlylvpagrh 142
                      +p     e++  +a+llkpgG l ++e+       + +  + +++++++  
       KIR61485.1 250 MPaeAIRETIVEAARLLKPGGALRFLEFQLTGDpLRDATVYEHAERNNEPF 300
                      **55599****************9999855443133333333555555444 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   6.6e-12   9.2e-09       1      99 []     175     272 ..     175     272 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 6.6e-12
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldnirkl 92 
                      ++iGcG G  +r+l  + p ++++gvD+ +  + + +   a+ +++  +  + + +    ld+ +s D+v+   vlh +  + ire++ ++++l
       KIR61485.1 175 VDIGCGFGKSTRPLVGRYPSAQVIGVDLAAPGL-RLAHVEAEAQGLAIDYRQADGRA-TGLDD-ASCDVVTGTMVLHEMpaEAIRETIVEAARL 265
                      69*******************************.44433344443333333333333.33333.5***************************** PP

  Methyltransf_12  93 LkpgGrl 99 
                      LkpgG l
       KIR61485.1 266 LKPGGAL 272
                      *****75 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   9.4e-12   1.3e-08      35     161 ..     157     284 ..     139     310 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 9.4e-12
                      HHHHHHHH--S--TT.EEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GG CS
  Ubie_methyltran  35 Wkkfveklvavkrga.kvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlr 127
                       + f+e    +++ga +v+D+ +G g  +  l      + +v+++D+ +  L+ ++  ++ +g   i++ qa++ +   +d s Dvvt +  l 
       KIR61485.1 157 HRLFTETALPDLPGAtRVVDIGCGFGKSTRPLVGRY-PSAQVIGVDLAAPGLRLAHVEAEAQGL-AIDYRQADGRATGLDDASCDVVTGTMVLH 248
                      344788888888887579***********9999875.6789******************99997.6**************************** PP

                      G-S-..HHHHHHHHHHHEEEEEEEEEEEE----SHH CS
  Ubie_methyltran 128 nvtD..klkaLkeayrvlkpGGrlvvlefskvelpl 161
                       ++   + +++ ea r lkpGG+l  lef     pl
       KIR61485.1 249 EMPAeaIRETIVEAARLLKPGGALRFLEFQLTGDPL 284
                      *98622578999****************97555444 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   2.2e-11     3e-08      32     137 ..     171     274 ..     159     283 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 2.2e-11
                 CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTT.STTS-EEEEEE---STTTCHCHHHHHHHHHHHHHHHE CS
         MTS  32 sgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvlee.veekkfdlivsNPPfhagkatelavaeeliaeAkeaL 129
                 + +v+D+GcG+G  +  l  ++p+a+v  vd  a  l++a+  +ea++l++++++ d+ ++ ++++++d++     +h+  a   ++++e i eA++ L
  KIR61485.1 171 ATRVVDIGCGFGKSTRPLVGRYPSAQVIGVDLAAPGLRLAHVEAEAQGLAIDYRQADGRATgLDDASCDVVTGTMVLHEMPA---EAIRETIVEAARLL 266
                 567******************************************************987626799*****99999999998...78888899999*** PP

                 EEEEEEEE CS
         MTS 130 kegGeLli 137
                 k+gG L++
  KIR61485.1 267 KPGGALRF 274
                 *****986 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.7e-06    0.0023      59     176 ..     167     286 ..     148     294 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.7e-06
                     -GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHH.HHHHHHHS-----TTEEEEES-TTTS---..--SEEEEESSGGGS-HHHHHHHHH CS
  Methyltransf_2  59 dleglkslvDvGGGtGalakaivsayPtikvivfDlpeV.veaAkehlsageeervefvgGdffkdslP..eaDaillkrvlhDwsdekcvklLk 150
                     dl g +++vD+G G G   +  v  yP+ +vi  Dl+    + A+     ++   +++ + d +   l   + D++  + vlh+   e++++ + 
      KIR61485.1 167 DLPGATRVVDIGCGFGKSTRPLVGRYPSAQVIGVDLAAPgLRLAHVE-AEAQGLAIDYRQADGRATGLDdaSCDVVTGTMVLHEMPAEAIRETIV 260
                     688999******************************87514555544.344456788999998888898446699999***************** PP

                     HHHHH--TT-EEEEEE----TTS--- CS
  Methyltransf_2 151 rvkkalpagGkvivveavlgadpsge 176
                     +  + l++gG++   e  l  dp ++
      KIR61485.1 261 EAARLLKPGGALRFLEFQLTGDPLRD 286
                     **********9999998888777665 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.3e-06    0.0087       5      47 ..     174     216 ..     171     225 .. 0.87
   2 ?   -2.4   0.0         2   2.8e+03      99     115 ..     258     274 ..     256     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.3e-06
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiea 47 
                     v++iGcG G+++  l  + P+ +++G+++  ++++ +  ++ea
      KIR61485.1 174 VVDIGCGFGKSTRPLVGRYPSAQVIGVDLAAPGLRLAHVEAEA 216
                     89***************************99998877666655 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2
                     HHHHHHHHEEEEEEEEE CS
  Methyltransf_4  99 llkelarvLkkgGvlel 115
                     ++ e+ar Lk+gG l++
      KIR61485.1 258 TIVEAARLLKPGGALRF 274
                     667899*******9976 PP

>> DUF2993  Protein of unknown function (DUF2993)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   5.4e-06    0.0075      34     101 ..     180     248 ..     167     289 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.4e-06
     DUF2993  34 gfPfltqllaGeldsvsvaargvvvdgpglriesveltledvrldlsdi..l.gkvrlvpvgrltatvtlt 101
                 gf   t++l G+++s +v + ++ +  pglr+  ve++++++ +d +++  +  ++ ++  + +t+t +l 
  KIR61485.1 180 GFGKSTRPLVGRYPSAQVIGVDLAA--PGLRLAHVEAEAQGLAIDYRQAdgRaTGLDDASCDVVTGTMVLH 248
                 55557899*****************..699999***************95443337777777777777775 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.2e-05     0.016      73     158 ..     171     276 ..     162     281 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-05
                     TS-EEEES-TT-HHH...HH--S-..EEEEESS-SSTTE...E......E.....S-TTS-S--TT-EEEEEEES--..-.SS-HHHHHHHHHHH CS
  Methyltransf_8  73 nlvvadlGcGeakia...eavrekekvrsfdlvavnerv...v......a.....cdlakvPledesvdvavfclsl..m.gtnladflkeanrv 147
                      + v+d+GcG  k +        + +v+ +dl+a++ r+   +      a      d +   l+d s dv+   + l  m ++ +++ + ea r+
      KIR61485.1 171 ATRVVDIGCGFGKSTrplVGRYPSAQVIGVDLAAPGLRLahvEaeaqglAidyrqADGRATGLDDASCDVVTGTMVLheMpAEAIRETIVEAARL 265
                     567889999988877433334456799999999887543111222222231111134455789*******97554431143789*********** PP

                     EEEEEEEEEEE CS
  Methyltransf_8 148 lkvGGllkvae 158
                     lk+GG l   e
      KIR61485.1 266 LKPGGALRFLE 276
                     *****998766 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.6e-06    0.0091      63     111 ..     171     220 ..     134     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.6e-06
                 T-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHHHHHTS-SS CS
        CMAS  63 GmtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakkrvdeldle 111
                   +++diGcG+G+ +r  v ry  ++v+g+ l +   +la+ + ++++l+
  KIR61485.1 171 ATRVVDIGCGFGKSTRPLVGRYpSAQVIGVDLAAPGLRLAHVEAEAQGLA 220
                 3579******************6699******999888888777777765 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00015      0.21      15      86 ..     171     241 ..     163     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
  Methyltransf_18  15 gsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklkeee.vdtv 86 
                       +rv+DiG+  g  +  lv +    +vi +D+++  l+ a+ ++e +gl   i+ r +dG ++  ++  +d+v
       KIR61485.1 171 ATRVVDIGCGFGKSTRPLVGRYPSAQVIGVDLAAPGLRLAHVEAEAQGL--AIDYRQADGRATGLDDAsCDVV 241
                      569*********************************************9..7999999997654433225543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2678.02
//
Query:       KIR61486.1  [L=103]
Description: hypothetical protein TK50_28155 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 696.07
//
Query:       KIR61487.1  [L=127]
Description: hypothetical protein TK50_28160 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-07   30.0   0.1    7.9e-07   29.7   0.1    1.2  1  SnoaL_2   SnoaL-like domain
    6.9e-06   26.4   0.0    9.8e-06   25.9   0.0    1.2  1  DUF4440   Domain of unknown function (DUF4440)
  ------ inclusion threshold ------
        0.1   12.4   0.0        1.1    9.1   0.0    2.0  1  SnoaL     SnoaL-like polyketide cyclase


Domain annotation for each model (and alignments):
>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.1   1.3e-10   7.9e-07       1     101 [.       7     109 ..       7     110 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.3e-10
                 HHHHHHHHHTTCHHHHHHTEEEEEEEEETTSE.EESHHHHHHHHHHHHH.HEEEEEEEEEEEEEETTEEEEEEEEEEEEETTSSEEEE.EEEEEEEEET CS
     SnoaL_2   1 vraflaalnagdldalaalfapdvvwedpgge.lrGreairaffralfa.afpdlrfeihdvvadgdrvavewtvtgtipatgrgvtv.rgvdvfrvrd 96 
                 v+++l+ ++++dld++ +l+ap +    pgg+ +    +++ + r+  +    +++  +   +adg  v   +++ g   ++g++++  r++dvf +rd
  KIR61487.1   7 VDHYLQLCEDRDLDRAGRLLAPGALIVFPGGRrFATLPELASASRGTYRwVRKHRDRYLVGAAADGVSVTSLGRLYG-QWPDGEPFDGiRYADVFVLRD 104
                 789**************************7777666666666555555421245555566669999999999***98.89999998889********** PP

                 TEEEE CS
     SnoaL_2  97 Gkive 101
                 G+ive
  KIR61487.1 105 GLIVE 109
                 ****9 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.6e-09   9.8e-06      10     103 ..      12     105 ..       4     106 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.6e-09
                 HHHHCT-HHHHHHCEEEEEEEE-TTS-EEEHHHHHHHHHCCHCEEEEEEEEEEEEEEETTEEEEEEEEEEEECC.TTEEEEEEEEEEEEEEEETT CS
     DUF4440  10 eafvagdaealaallapdavlvgpsgtvldkeellealeagfaagrslelteeevrvlgdlAvvtgrytfegrg.dgepvegrgrftsvwrkegg 103
                 +  + +d++++++llap a++v p+g+++ +   l++  +g  ++ + + ++  v    d++ vt   + +g+  dgep++g  r+  v++ ++g
  KIR61487.1  12 QLCEDRDLDRAGRLLAPGALIVFPGGRRFATLPELASASRGTYRWVRKHRDRYLVGAAADGVSVTSLGRLYGQWpDGEPFDG-IRYADVFVLRDG 105
                 556789**********************96666666777899999999**********9999999777777766599***86.888888877765 PP

>> SnoaL  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00019       1.1      80     120 ..      76     117 ..       4     121 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00019
                 EESSEBTTBE-TT-EEE.EEEEEEEEEETTEEEEEEEEECHH CS
       SnoaL  80 thtgeflGipptGkkvk.feeitllrvedGkIveewdviDll 120
                 t  g++ G+ p G +++ ++  +++ ++dG Ive+  + Dl+
  KIR61487.1  76 TSLGRLYGQWPDGEPFDgIRYADVFVLRDGLIVEQHVYNDLA 117
                 5569999999******747899************98887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 869.33
//
Query:       KIR61488.1  [L=370]
Description: hypothetical protein TK50_28165 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-32  110.8   0.9    1.1e-31  110.5   0.9    1.1  1  NMT1            NMT1/THI5 like
    3.8e-11   43.1   0.7      6e-11   42.4   0.7    1.3  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
    1.1e-09   38.4   0.6      1e-08   35.2   0.6    2.1  1  NMT1_2          NMT1-like family
    6.1e-08   32.4   0.2    1.1e-07   31.5   0.2    1.3  1  NMT1_3          NMT1-like family
    1.3e-05   24.8   0.6      0.049   13.0   0.2    2.2  2  SBP_bac_3       Bacterial extracellular solute-binding protei
      0.002   17.8   1.7      0.002   17.8   1.7    1.9  2  OpuAC           Substrate binding domain of ABC-type glycine 
  ------ inclusion threshold ------
       0.72    9.8   4.2        1.9    8.4   4.2    1.8  1  LPAM_2          Prokaryotic lipoprotein-attachment site


Domain annotation for each model (and alignments):
>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.9   4.4e-35   1.1e-31       4     216 .]      53     265 ..      50     265 .. 0.92

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 4.4e-35
                 GHHHHHHHHTTHHHHTTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--EEEEEECCC--SSGGGGTTSEEEE-S.- CS
        NMT1   4 haglyvAkekGYFkeeGldVeivepadpsdatelvasgkadfgvsyqesllaarakglpvvsvaallqeplsglivlkdsgikspkDLkGkrigyvg.s 101
                  a + vAke GYF+ee l Ve +   ++  a+++vasg ad+  +++ s+l a +k++pv++++ l+q+ +  ++v+ ds ++  +DLkGk+ig+   +
  KIR61488.1  53 VAVYAVAKELGYFAEEKLTVETINTDGSVAALQAVASGSADLTAADSGSILGAVEKNVPVKAIGGLVQNWPWVMAVKPDSTLTGGADLKGKKIGVISlA 151
                 57788*****************************************************************************************98878 PP

                 TTHHHHHHHHHHHTT--G.GG-EEEE-.T.T-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT-----SEEEEEEHHHHHH-HHHHHHH CS
        NMT1 102 pfekallkallakdggdp.sdvtlvnvgg.tslakalltgkvDaaiggyenwegvelesegkelrifaladlgvpdyyslvlitnekllkenpelvkkF 198
                 + +    +a++a++g+dp +dv+l++vg+   +a+al +gkvD+    y+      +e++g+ l+++   d     + sl +++    l++n++   +F
  KIR61488.1 152 SGSAPYARAFVAAAGLDPaKDVELLPVGVgAPAAAALNDGKVDMLA-LYTQ-AYAVIENSGITLKYLDNPDAFD-GIRSLSFAVGARKLDDNKDVYTRF 247
                 889999**********87479***99985145556********998.4444.455567*********9999997.9*********************** PP

                 HHHHHHHHHHHHHSHHHH CS
        NMT1 199 lrAlkkGyeyalahPeea 216
                 lrA  k++ + +++Pe+a
  KIR61488.1 248 LRAAYKAMLFSAKNPEAA 265
                 ****************87 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.7   2.4e-14     6e-11      30     173 ..      71     208 ..      50     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 2.4e-14
                     EEEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHS.-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHHGG-EEEE--TT-TTTTHHHH CS
  Phosphonate-bd  30 evelvvatdyaavvealragqvDiaflgplayvqardqa.gveplatrvrsdGsasyrsviivradsdiqsledLkgktiafvspsStsGylvpa 123
                     +ve+  ++   a+ +a+++g++D+  +++ + + a++++  v++++  v+         v++v++ds+++  +dLkgk+i++ s +S s+ ++ a
      KIR61488.1  71 TVETINTDGSVAALQAVASGSADLTAADSGSILGAVEKNvPVKAIGGLVQ-----NWPWVMAVKPDSTLTGGADLKGKKIGVISLASGSAPYARA 160
                     4677777777899************************98799*******8.....99******************************99777776 PP

                     HHTCCCCT--HHHHSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHH CS
  Phosphonate-bd 124 alLvkeagldpeddfsevfsgshdaavlavlsgdadaaavsadaledlva 173
                        v+ agldp +d +   +g    a++a+ +g++d  a++++a+   ++
      KIR61488.1 161 F--VAAAGLDPAKDVELLPVGVGAPAAAALNDGKVDMLALYTQAYAVIEN 208
                     6..69****************99999*****************9987765 PP

>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.6     4e-12     1e-08      19     245 ..      54     265 ..      35     269 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 4e-12
      NMT1_2  19 aplvvakekglfakeGltvelekqaswaelrdkllagelDaahvltpapllidlGiggakadmkvlaslnln.Gqaitlsnklkdkkvsdakalkdlva 116
                 a  +vake g+fa+e ltve++ + +  ++++++++g+ D+ ++  + +l++ +     ++++k++  l +n +  + ++ +      s+  + +dl  
  KIR61488.1  54 AVYAVAKELGYFAEEKLTVETINTDGSVAALQAVASGSADLTAADSGSILGAVEK----NVPVKAIGGLVQNwPWVMAVKPD------STLTGGADL-- 140
                 4559**************************************9966666555443....36999999998884555556544......666666666.. PP

      NMT1_2 117 kkkaskplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpp.pqmvanlkagtidgfcv.gePwnaqavaegiGvtaltsqelwkdhPekvlgvr 213
                      k+ ki+v +  s  +   r ++aaaGldp++dv+l+ v   + ++a+l+ g++d ++  +  + a+ ++ gi  + l+  + +++     ++v 
  KIR61488.1 141 -----KGKKIGVISLASGSAPYARAFVAAAGLDPAKDVELLPVGVgAPAAAALNDGKVDMLALyTQAY-AVIENSGITLKYLDNPDAFDGIRSLSFAVG 233
                 .....7899***********************************9999***********988734444.666677777888999999999999999999 PP

      NMT1_2 214 edfveknpntaralvkalleAtkwldakkenr 245
                 ++ +++n++++ ++++a  +A  ++ +++e++
  KIR61488.1 234 ARKLDDNKDVYTRFLRAAYKAMLFSAKNPEAA 265
                 99999999999999999999998888766654 PP

>> NMT1_3  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.2   4.4e-11   1.1e-07      13     166 ..      58     198 ..      53     207 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 4.4e-11
      NMT1_3  13 vGvaiatliseklakdqkvkasaqssaGsveNiqllkkgeadlailqsdvayeAyeGegefegkkplknlraitmlyaev.fqlvvskdsgigsiadlk 110
                 v ++++ ++      ++k++++++++ Gsv  +q++ +g adl  + s+    A+e +       p+k   ai+ l ++    ++v+ ds+++  adlk
  KIR61488.1  58 VAKELGYFA------EEKLTVETINTDGSVAALQAVASGSADLTAADSGSILGAVEKNV------PVK---AIGGLVQNWpWVMAVKPDSTLTGGADLK 141
                 444444443......45678999**************************9999987444......444...5666655431455579************ PP

      NMT1_3 111 gkrvsvGpegsGtegsarailealgls.ekdlklleelgygesadalkdgqldgaal 166
                 gk+++v + +sG+   ara  +a+gl+  kd++ll     +++a al dg++d+ al
  KIR61488.1 142 GKKIGVISLASGSAPYARAFVAAAGLDpAKDVELLPVGVGAPAAAALNDGKVDMLAL 198
                 ***************************889999865544568999********9876 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   1.9e-05     0.049     120     194 ..      60     131 ..      37     134 .. 0.76
   2 !   12.0   0.0     4e-05       0.1      88     178 ..     125     217 ..     118     250 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 120 taeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrkg 194
                     +++ee+  ++e++++d   +alqa+++g++d ++ads ++ ++v+kn   k++   + +   + ++av+++
  KIR61488.1  60 KELGYFAEEKL-TVETINTDGSVAALQAVASGSADLTAADSGSILGAVEKNVPVKAIG--GLVQNWPWVMAVKPD 131
                 33334444333.6788899*******************************98888887..777777777777766 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4e-05
                 EEEEEETTSHGTCCHSSCGCGTTSEEEEETTSH.HHHHHHHHHHC........TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  88 vllvrkkdaskissiksladLkgkkvgvqagst.aeellkeelkk........gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvl 177
                 v++v+ +     s++++ adLkgkk+gv    + ++ +++  + +        ++e+ ++   + a +aL++g+vd  +a  + ++ ++++++   ++l
  KIR61488.1 125 VMAVKPD-----STLTGGADLKGKKIGVISLASgSAPYARA-FVAaagldpakDVELLPVGVGAPAAAALNDGKVDM-LALYTQAYAVIENSGITLKYL 216
                 5667633.....5788889********99986614444444.333466667778888999999999999*******5.666777777777777777777 PP

                 E CS
                 x RF
   SBP_bac_3 178 v 178
                 +
  KIR61488.1 217 D 217
                 4 PP

>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   1.7   7.8e-07     0.002      25     220 ..      66     244 ..      45     253 .. 0.77
   2 ?   -3.1   0.0       1.8   4.6e+03     169     187 ..     336     354 ..     321     357 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.8e-07
                 HHTTEEEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHHHHHHHHHHHHHHEEEEEEEESEEECEEEEEEHHHHHHHTTTBHHHHCTHHGGTEEEEEHHC CS
       OpuAC  25 ekkGykveltnlgstavlfaalasGdiDvypeewtgtayeaykkaveekkglevlgplgagnteglavpkyvaekygiksisDLkkpaedlelgakgef 123
                  +  ++ve+ n ++++++ +a+asG++D+++ + +g+   a++k+v+    +++ g l+ +  + +av+ +    ++++  +DLk ++     g+ +  
  KIR61488.1  66 AEEKLTVETINTDGSVAALQAVASGSADLTA-ADSGSILGAVEKNVP----VKAIGGLVQNWPWVMAVKPD----STLTGGADLKGKKI----GVISLA 151
                 44567999***********************.889999988888888....55557777777777777766....5********99999....666666 PP

                 CHSTTSHHCCHHHHHHHHHHT-TTCEEEGSCEEEEHHHHHHHHHTTCSSEEEEET.TSTHHHHT..TEEE-B-TTSTS-SSEEEEEEEEHHHHHHSCTH CS
       OpuAC 124 lgrpdgwgcekvtegllkaYgldkvelvegseaamdaelyaaykrgepvvvyawt.Pdwaikky..dlvvLedpkglfppaynvvpvvrkefaekaPev 219
                  g ++ +       +++ a gld  ++ve    ++ a ++aa+ +g++++  ++t + + i +    l++L++p+ +++   ++   v +  ++++ +v
  KIR61488.1 152 SGSAPYAR------AFVAAAGLDPAKDVELLPVGVGAPAAAALNDGKVDMLALYTqAYAVIENSgiTLKYLDNPDAFDGI-RSLSFAVGARKLDDNKDV 243
                 66666666......99999999777777777888888**********87776666155555555667**********999.777777777777777675 PP

                 H CS
       OpuAC 220 a 220
                 +
  KIR61488.1 244 Y 244
                 4 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.8
                 TCSSEEEEETTSTHHHHTT CS
       OpuAC 169 gepvvvyawtPdwaikkyd 187
                 g+++++++w+P  + ++ d
  KIR61488.1 336 GDVQLGDVWEPGLLAGAND 354
                 7899999999987777666 PP

>> LPAM_2  Prokaryotic lipoprotein-attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.2   0.00075       1.9       3      15 ..      10      22 ..      10      26 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00075
      LPAM_2  3 lllallllLaGCG 15
                ++l+++l+LaGCG
  KIR61488.1 10 AVLVAALALAGCG 22
                5899********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2739.36
//
Query:       KIR61489.1  [L=284]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-27   96.2  20.1    3.4e-27   95.4  20.1    1.3  1  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.023   15.2   4.9      0.023   15.2   4.9    2.5  2  FtsX          FtsX-like permease family
        1.6    8.2   6.6        6.3    6.3   1.0    2.8  2  MtrF          Tetrahydromethanopterin S-methyltransferase, F 


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4  20.1   5.7e-31   3.4e-27       1     183 [.      99     272 ..      95     274 .. 0.91

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 5.7e-31
  BPD_transp_1   1 gillGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrw 95 
                   g+++++l++   ++ k++   l+p+i +++++P ++la+l+v       ++g++ ++ ++++++ +++++++++ ++lr+ + d ++  ++ Gasr 
    KIR61489.1  99 GVGAAVLLGtfISQIKVVEATLMPYIVAFQTVPKVALAPLFV------LWFGFGLTSKVVMAAVISFFPMLVNVIEGLRAADADRIQMLTVFGASRA 189
                   45566666677778999*************************......9************************************************ PP

  BPD_transp_1  96 qifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   qifr v+lP+alp i++gl + +++++ gav+ ef+g++ Glg+lll+++ ++d++     g++a+++++ ++ l+a ++ rll++r+
    KIR61489.1 190 QIFRMVRLPSALPFIFAGLDIGIVFAILGAVVGEFIGAKEGLGYLLLQTNYNFDIA-----GMFAVLVVLSVMGLLAHFVIRLLQRRL 272
                   ********************************************************.....666666777777777777777777765 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   6.9     0.043   2.6e+02      18      73 ..      85     144 ..      80     165 .. 0.51
   2 ?   15.2   4.9   3.8e-06     0.023       4      87 ..     178     261 ..     176     270 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.043
        FtsX  18 lllllteillitlvalviGlglgllaaql..lsdvllssvfs..selkisidlitvliii 73 
                 +++ + e+ll ++++  ++++lg++++q+  + + l  + ++  + +k+ + ++ vl + 
  KIR61489.1  85 FWVTTQEALLGFAIGVGAAVLLGTFISQIkvVEATLMPYIVAfqTVPKVALAPLFVLWFG 144
                 667777788888888888888888888873322222222222113333333333322222 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 3.8e-06
        FtsX   4 igilralGmkkkqvlllllteillitlvalv.iGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallaglls 87 
                 i +l ++G++++q+++++ + ++l +++a + iG ++ +++  ++  ++++  + + l +++++   +++++ +l++++++gll+
  KIR61489.1 178 IQMLTVFGASRAQIFRMVRLPSALPFIFAGLdIG-IVFAILGAVVGEFIGAKEGLGYLLLQTNYNFDIAGMFAVLVVLSVMGLLA 261
                 77899*************9999999998888355.55555556667777777554444444444444444444444444444544 PP

>> MtrF  Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.0    0.0011       6.3      39      55 ..      90     106 ..      87     111 .. 0.87
   2 ?    3.9   0.5    0.0056        34      32      54 ..     196     217 ..     188     224 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0011
        MtrF  39 atgivGfaiGfvlAllL 55 
                 ++++ GfaiG+  A+lL
  KIR61489.1  90 QEALLGFAIGVGAAVLL 106
                 67899**********98 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0056
        MtrF  32 kLdSGvsatgivGfaiGfvlAll 54 
                 +L S++    + G+ iG+v+A+l
  KIR61489.1 196 RLPSALPF-IFAGLDIGIVFAIL 217
                 55555554.478*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2510.80
//
Query:       KIR61490.1  [L=246]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-64  215.3   6.0    1.1e-63  214.9   6.0    1.1  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.7e-44  151.7   3.7    5.3e-44  150.0   3.7    1.7  1  adh_short     short chain dehydrogenase
    1.7e-06   28.1   1.0    0.00022   21.2   1.0    2.3  1  KR            KR domain
     0.0022   17.5   0.3     0.0022   17.5   0.3    1.8  2  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.9   6.0   2.5e-67   1.1e-63       1     234 []      19     244 ..      19     244 .. 0.96

  Alignments for each domain:
  == domain 1  score: 214.9 bits;  conditional E-value: 2.5e-67
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                   Gaa+gIG+ iA +la++Ga v+ +dl + +        + +g +   ++D+++  +++ lv+ v +++g+lD lvnnag++++  gp++++++e+f 
    KIR61490.1  19 GAARGIGARIAATLAARGAVVAHADLADVD--------DPGGPHSrHRVDIRSARSCAGLVAGVIDRHGRLDLLVNNAGVVRR--GPAATMTEEDFT 105
                   9************************99998........455555449************************************..************ PP

                   HHHHHHTHHHHHHHHHHHHHCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHH CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleel 192
                   ++ldvnl+++f++++aa p++++  g++vnl s+ ++++v n+  y+++Ka++ +ltr lA e++++ iRvNav p ++ T+++++++g  + l+e 
    KIR61490.1 106 TVLDVNLTGTFRMCQAAYPALRAArGAVVNLGSTNGQIAVLNTVGYCVSKAGVLHLTRVLALEWARDAIRVNAVGPTIVPTDMTTDVRGDAAYLAEK 202
                   *******************555555************************************************************************ PP

                   HHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 193 earaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                    a +plgr++ p++va+a+++L+sd+a+++tGqt++vDgG+t
    KIR61490.1 203 LATIPLGRMAHPDDVANAVAYLLSDAAAMVTGQTVFVDGGVT 244
                   ****************************************97 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.0   3.7   1.2e-47   5.3e-44       2     191 ..      14     193 ..      13     197 .. 0.93

  Alignments for each domain:
  == domain 1  score: 150.0 bits;  conditional E-value: 1.2e-47
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 v+lvtGa++GIG  ia +la++Ga v+ +d            + + g      +vD+++++++  lv+ +++++g+ld+LvnNAG+ ++gp++ ++ee+
  KIR61490.1  14 VALVTGAARGIGARIAATLAARGAVVAHADLA---------DVDDPGGPHSRHRVDIRSARSCAGLVAGVIDRHGRLDLLVNNAGVVRRGPAATMTEED 103
                 89**********************99774444.........2233344566789********************************************* PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 +  v++vNltg+f +++a++pa l++ +G++vn +S++g+ +v +++ Y+ sKa+v +ltr la e+a++ irvnav P +v Tdm++++r
  KIR61490.1 104 FTTVLDVNLTGTFRMCQAAYPA-LRAARGAVVNLGSTNGQIAVLNTVGYCVSKAGVLHLTRVLALEWARDAIRVNAVGPTIVPTDMTTDVR 193
                 **********************.67**************************************************************9887 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   1.0   4.8e-08   0.00022       4     122 ..      16     121 ..      14     154 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4.8e-08
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 l+tG++ g+G  +a +la++ga     ++          a +a + + g   +  ++D+ ++ + + l++ + ++++++   ++ Agv+r ++ ++mt+
  KIR61490.1  16 LVTGAARGIGARIAATLAARGAV----VAH---------ADLADVDDPGGPHSRHRVDIRSARSCAGLVAGVIDRHGRLDLLVNNAGVVRRGPAATMTE 101
                 89999999999999999999973....222.........3577788889999999******************************************** PP

                 HHHHHHHTTTTHHHHHHHHH CS
          KR 103 edleqvlapKvkGawnLhel 122
                 ed+++vl   ++G+  + ++
  KIR61490.1 102 EDFTTVLDVNLTGTFRMCQA 121
                 *************9887766 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.3   4.9e-07    0.0022       1     116 [.      15     139 ..      15     142 .. 0.73
   2 ?   -0.9   0.1       0.2     9e+02     214     236 ..     213     235 ..     210     239 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.9e-07
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HH....HHHHHHHHH.T-SEEEE--S.---HHHHHHSHHHH...HHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrs....alerlfkee.qpdavihlAa.vggvaassedpadf...iek 90 
                 +lVtGa+  iG+ ++  l+++g  v   d   + +  +  +  + +++d++ +      ++ +++++ + d  ++ A+ v   +a   + +df   ++ 
  KIR61490.1  15 ALVTGAARGIGARIAATLAARGAVVAHADLA-DVDDPGGPH--SRHRVDIRSARscagLVAGVIDRHgRLDLLVNNAGvVRRGPAATMTEEDFttvLDV 110
                 59********************655555555.333333222..7899999999867777889999***********9996555554444454422278* PP

                 HTHHHHHHHHHHH...HHTCTEEEEEEEG CS
   Epimerase  91 nlqgtlnlleaar...kagvkrllflsSs 116
                 nl gt ++++aa    +a    +++l+S+
  KIR61490.1 111 NLTGTFRMCQAAYpalRAARGAVVNLGST 139
                 ***********984443333378888876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.2
                 EHHHHHHHHHHHHHHHTT-STTE CS
   Epimerase 214 yveDvaeaillvlehvdagdkge 236
                 + +Dva+a+ ++l   +a  +g+
  KIR61490.1 213 HPDDVANAVAYLLSDAAAMVTGQ 235
                 889********999988877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1785.01
//
Query:       KIR61491.1  [L=454]
Description: peptidase M20 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-21   77.2   0.0    2.4e-21   76.4   0.0    1.4  1  Peptidase_M20  Peptidase family M20/M25/M40
    7.3e-09   35.5   0.0    1.3e-08   34.7   0.0    1.5  1  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   2.7e-25   2.4e-21       5     205 ..      87     447 ..      85     449 .. 0.89

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 2.7e-25
                    ES-BSS..TTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHHTTTCESEEEEE CS
                    xxxxxx..xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   5 HlDvVp..eeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegleerekvdavfel 97 
                    H+Dv    ++++ +w + p++++++dG+ly+rG++d+kg +++ ++a++a++ +g++p+ t +++f++     + G +++++ + +r + da+   
     KIR61491.1  87 HYDVEVepAGDDADWISpPYAAEIHDGRLYARGVADDKGALMSRIHAVAAWRLAGLTPPVTSRFIFEGKQWLHSPGLGSFCAAYADRLDSDAA--- 179
                    99995557888899****************************************************999887669999999944456666664... PP

                    EEESSSBTCHSTETEEEE.............................................................................. CS
                    xxxxxxxxxxxxxxxxxx.............................................................................. RF
  Peptidase_M20  98 hieepgileagklaigvv.............................................................................. 115
                     ++e ++ + g+  + ++                                                                              
     KIR61491.1 180 -LWENSWRD-GQDRPLLKlaekgvlylrltvrtlprdltsqntallpaatarlaaalaqlqrpdgtvtvpgfaddvrpltdaerdllaevefdgdf 273
                    .47566655.88777777999999************************************************************************ PP

                    ..................................................................................EEEEEEEEEESHEE CS
                    ..................................................................................xxxxxxxxxxxxxx RF
  Peptidase_M20 116 ..................................................................................kvevelleggapvt 129
                                                                                                      +v++e    ++p +
     KIR61491.1 274 lreragvrgftgglddrqaavairtvptltvagiaggdmrddvtlgipataaakveirlvpgqdpqrvlaavrdhlaatgfgDVDIEVMATSRPNM 369
                    *********************************************************************************88****999999999 PP

                    EC.CHHHHHHHHHHHHHHHTSC.EEEEEESSSBHTHHHHTTTEEEEEEESS..GGCTTSTTTEEEHHHHHHHHHHHHHHH CS
                    xx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 130 ln.dsplvkalaeaaeelfgek.velivsgpggtdarffagiptvmifgpg..sglaHspnEyvdledlekgikvlarll 205
                    ++  +p+v+++a+aa++++g + v ++ ++ +g   +   + p v ++g +  ++++ +pnE+++l+d+++gi+ + +++
     KIR61491.1 370 TDhRDPFVALVADAARRAYGTEpVIEPYTQWIGNQGALA-ARPIV-GVGVSraDSGVDGPNENIRLDDYRDGIRHVIEVM 447
                    99*****************96633333333244444444.66655.566332369999***************9887766 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.5e-12   1.3e-08      30     104 ..     227     352 ..     196     357 .. 0.73

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.5e-12
                 HHHHHHHHHCSCTTEEC....................................................TCCTCCCCCEECCE-C....CCCEESSEEE CS
   M20_dimer  30 ieklarllaeledeegdia...............................................eerslprttlnvtgiegGs....aknvipdeae 77 
                    la +la+l+  +g ++                                               +  +   +tl+v+gi gG+     +  ip++a 
  KIR61491.1 227 TARLAAALAQLQRPDGTVTvpgfaddvrpltdaerdllaevefdgdflreragvrgftgglddrqaAVAIRTVPTLTVAGIAGGDmrddVTLGIPATAA 325
                 55556666666666555556667777777777777777777777777777777777777777766555556679************998888******* PP

                 EEEEEEHHHHHHHHHHHHHHHHHHTSC CS
   M20_dimer  78 akidiRllpgedpeevleeieeileke 104
                 ak++iRl+pg+dp++vl++++++l++ 
  KIR61491.1 326 AKVEIRLVPGQDPQRVLAAVRDHLAAT 352
                 ***********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.55
# Mc/sec: 2472.84
//
Query:       KIR61492.1  [L=274]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-17   63.1   0.0    4.6e-15   55.9   0.0    2.0  1  Abhydrolase_1  alpha/beta hydrolase fold
    4.8e-13   50.2  20.1    6.1e-13   49.9  20.1    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    1.3e-09   37.7   0.3    1.1e-06   28.1   0.0    2.8  3  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.045   12.5   0.0       0.14   10.8   0.0    1.8  2  Ndr            Ndr family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0     1e-18   4.6e-15       1     251 [.      31     248 ..      31     254 .. 0.74

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 1e-18
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeype 96 
                    p+l+++h  p ss  +        La++g +v+++D +G+g S+++p +    +++  +a+ l +  dalg+d+++l+G+  G  ia+++a+++p+
     KIR61492.1  31 PTLLVVHQSPLSSATYDV--ALAPLARRGLRVVAVDTPGFGMSDAPPQP----WTIPQYAAALWQTADALGLDRVHLLGQHTGAVIAAEAALRAPH 120
                    68999******9999888..77799999*******************65....8888899999999****************************** PP

                    GEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHH CS
  Abhydrolase_1  97 rVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksieqw 192
                    rV++l+l g       +  ++   a++  +++ gy ++    ++ +++++  ++++  +        pd ++r   ++    +++++  ++     
     KIR61492.1 121 RVRRLILQGL------PLYDDAERAQKKATYAPGYTPERDGSHLRVIWDRVWGLYPRLS--------PDEADRQVAEY--LLTGPDYATAYRAVFD 200
                    **********......7778888888888999999999999999988888887777662........33333333322..2222222222233333 PP

                    HHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSS CS
  Abhydrolase_1 193 pttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHl 251
                      +d+a+l            pt++++g++D ++  ++  + +++lp++ lv+i+++  +
     KIR61492.1 201 HRLDTAALAAV---------PTVLLHGADDLVD--RMTPQVRAALPHAPLVTIPGGTDF 248
                    33333333322.........8888888777777..577777777777666666555554 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9  20.1   1.4e-16   6.1e-13       9     220 .]      41     260 ..      24     260 .. 0.71

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 1.4e-16
                    .....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHHHHHHCCTT....TTSEEEEEETCHHHHHHHHHHCC....EEEEES-..--- CS
  Abhydrolase_6   9 ssassWlvapLaallaagvhvlapDlpGhGrsdpppldledladlaalldelaa..gggpvvlvGHSlGGalalaaapla..lvvgvlldppptal 100
                    +s+  +  + La+l+++g +v+a+D pG+G sd pp  ++   ++aa+l   a+  g ++v+l+G   G+++a++aa  a  +v++++l + p+ +
     KIR61492.1  41 LSSATY-DVALAPLARRGLRVVAVDTPGFGMSDAPPQPWTI-PQYAAALWQTADalGLDRVHLLGQHTGAVIAAEAALRAphRVRRLILQGLPLYD 134
                    444455.3589999****999*********99*******88.9996655555555899*****************777777766668888866555 PP

                    -TTTS----TTHHHHHHTT-C....CCCHCCH...S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHC...HTTCCHHTT-TTGCEEECTT-CHHHHC CS
  Abhydrolase_6 101 pagllaaalelllallallrl....lawlsre...plprlfladedadaawrarlarlaallaglg...llpaaawadlpvpllvlggeDplvprl 186
                    +a  ++  ++++ ++++ +        w+  +   ++prl  ++   d+ ++++l ++++++++      ++++  a + vp+++l+g+D+lv r+
     KIR61492.1 135 DAERAQKKATYAPGYTPERDGshlrVIWD--RvwgLYPRLSPDEA--DRQVAEYLLTGPDYATAYRavfDHRLDTAALAAVPTVLLHGADDLVDRM 226
                    55556666666665555333344443333..12223444444444..4888888888888888444332444444444444444448****99999 PP

                    HHCCCH.STTEEETCE...SSS-HHHHSHHHHHHH CS
  Abhydrolase_6 187 lerlla.qagarlpvvlpgaGHlphleepdevaea 220
                      +  a +++a l v++pg+  ++ +e+p+++a+a
     KIR61492.1 227 TPQVRAaLPHAPL-VTIPGGTDFVADEQPEAFADA 260
                    9999997788888.*******************96 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   2.5e-10   1.1e-06       6     108 ..      32     129 ..      27     148 .. 0.82
   2 !    6.3   0.1    0.0011       5.1     182     210 ..     201     229 ..     187     239 .. 0.77
   3 ?   -0.3   0.0      0.12   5.3e+02     190     218 ..     235     262 ..     225     267 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 2.5e-10
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse..gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkv 101
                  ++++vH    +s  y+   + La++G  v+a+D  G+G s+  ++ + +p++   +   a ++       +  ++ llG+ +G++ia++++lr p++v
   KIR61492.1  32 TLLVVHQSPLSSATYDVALAPLARRGLRVVAVDTPGFGMSDapPQPWTIPQYAAALWQTADAL-------GLDRVHLLGQHTGAVIAAEAALRAPHRV 122
                  7788888889999***************************97777777776655444333333.......344699********************** PP

  Hydrolase_4 102 aglilsa 108
                  ++lil +
   KIR61492.1 123 RRLILQG 129
                  ****977 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0011
  Hydrolase_4 182 rleeraakitlPllllhGeaDkvvdpeas 210
                  + ++ aa + +P+ llhG++D v  + ++
   KIR61492.1 201 HRLDTAALAAVPTVLLHGADDLVDRMTPQ 229
                  5556777788***********99888777 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.12
  Hydrolase_4 190 itlPllllhGeaDkvvdpeasrelyerlg 218
                   ++Pl  + G+ D v d+++  +++++++
   KIR61492.1 235 PHAPLVTIPGGTDFVADEQPE-AFADAVA 262
                  35899999********96665.6666655 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.2e-05      0.14      80     129 ..      78     127 ..      17     132 .. 0.86
   2 ?   -1.2   0.0      0.15   6.5e+02     219     272 ..     209     261 ..     185     265 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.2e-05
                 --HHHHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEE CS
         Ndr  80 pslddladqllavldhfklksviglGvgaGAyilarfalkhperveglvL 129
                  ++ + a  l + +d + l+ v  lG+  GA i a  al+ p rv  l+L
  KIR61492.1  78 WTIPQYAAALWQTADALGLDRVHLLGQHTGAVIAAEAALRAPHRVRRLIL 127
                 478899999***************************************99 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.15
                 S.S-EEEEEETTSTTHHHHHHHHHHS-TTTEEEEEETT-TT-HHHH-HHHHHHHH CS
         Ndr 219 e.vkvllvvGdkspfvdevvevnskldkkkttllkvadsgglvleeqPdklaesl 272
                   v+++l+ G+      ++ +v+ +l   ++ l+ +   +  v +eqP++ a ++
  KIR61492.1 209 AaVPTVLLHGADDLVDRMTPQVRAALP--HAPLVTIPGGTDFVADEQPEAFADAV 261
                 247777777777777777777777774..56788888888889999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1834.21
//
Query:       KIR61493.1  [L=325]
Description: hypothetical protein TK50_28195 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-33  114.4  24.7    1.2e-17   64.4  11.1    2.0  2  EamA      EamA-like transporter family


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   5.6   2.2e-19   3.9e-15      11     136 ..      32     157 ..      23     158 .. 0.94
   2 !   64.4  11.1   6.6e-22   1.2e-17       2     136 ..     167     305 ..     166     306 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 2.2e-19
        EamA  11 alfwaiyfvlskillrkvspltltfvrfliagillliiallkegkl.aklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlil 108
                  l+w+++++  +++l++++p+  t+ rfl+ag+l+l++ + + g +  +l++  w  +l  gll + ++  l+  +++++s++ asl+++ +P+++l +
  KIR61493.1  32 YLLWGSTYLGNRVALESLPPMVSTAGRFLAAGALVLAVVAARNGADrLRLPRDRWPGVLAGGLLMVGAGSALLAVGQQYVSSGLASLLVAAMPLWVLAI 130
                 578**************************99999988888888888799*************************************************9 PP

        EamA 109 svlllgekltlkqllgivlillGvllil 136
                      g+++    ++g++ +l+G++l++
  KIR61493.1 131 RLGG-GQRPRPAAVVGVLGGLAGLALLV 157
                 9888.********************997 PP

  == domain 2  score: 64.4 bits;  conditional E-value: 6.6e-22
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegkl....aklslkdwllllllgllgtvlafllffyalkktsasnasl 96 
                  gi ++++++++wa++ +l+++l +  + l  t++++l++g+++ + al+ ++++    a+ + ++w +  +l l++tv++f++++++l++ + + ++ 
  KIR61493.1 167 AGIATIVASTMVWAAGSTLTQRLPAPADHLVGTGWQMLAGGAAVAVAALPAGEWHrlrlAEVTGRSWVAWTYLMLVCTVVGFSVYTWLLRRAPLQLVAT 265
                 69999***************************************9999999999989999999999********************************* PP

        EamA  97 itslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 + ++ Pv++++l++++l e+l  +q+l+ +++l++v+l++
  KIR61493.1 266 YAYVNPVIAVLLGMVVLDERLAGRQVLAGAVVLASVALVV 305
                 **************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2389.06
//
Query:       KIR61494.1  [L=270]
Description: IclR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-30  103.7   0.0    9.8e-30  103.0   0.0    1.4  1  IclR      Bacterial transcriptional regulator
    2.7e-09   36.7   0.0    2.7e-09   36.7   0.0    2.6  3  HTH_IclR  IclR helix-turn-helix domain
    1.2e-05   25.1   1.4    0.00041   20.2   0.0    3.0  3  MarR_2    MarR family
     0.0028   17.5   0.0      0.006   16.4   0.0    1.5  1  TrmB      Sugar-specific transcriptional regulator TrmB
     0.0037   17.6   0.0      0.081   13.3   0.0    2.7  3  Rrf2      Transcriptional regulator


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.0   2.7e-33   9.8e-30       3     128 ..     134     257 ..     132     258 .. 0.98

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 2.7e-33
                 EEETTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEEE CS
        IclR   3 lravsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvsg 101
                 +r+ +++Gt+ pl++ +  Ka+Laal++ el+++l +  l+r+t+ Titdp+ L++eLa++R+qGyav+ +E ++g  ++Aa i+  +g+v++ +s+ g
  KIR61494.1 134 VRMSVSLGTSHPLHSGSSSKAILAALPAVELDEYLAQ-PLERVTPSTITDPAVLRDELAHIRRQGYAVSIGERQNGAGSVAAAIRYGTGQVFGSISLCG 231
                 788999*******************************.************************************************************* PP

                 ETTTSHHHHHHHHHHHHHHHHHHHHHH CS
        IclR 102 ptarlteeelkeellalvreaArkisr 128
                 p+ r+t++  ++   alv +aA++is+
  KIR61494.1 232 PQDRFTRQVCAD-HGALVAAAAADISA 257
                 ***********9.9***********97 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   7.5e-13   2.7e-09       2      51 ..      18      68 ..      17      69 .. 0.91
   2 ?   -1.5   0.2      0.64   2.3e+03      35      44 ..      97     106 ..      90     108 .. 0.83
   3 ?   -2.1   0.0      0.95   3.4e+03      21      33 ..     252     264 ..     249     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 7.5e-13
                HHHHHHHHCT-CTTBSS.-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR  2 ldRalaiLdalaeapqe.ltlselArrtglpkStvhRlLqtLvelGyveqd 51
                l Ral++++++a++++e l++s +Ar++glpk+ ++R+L+ L    ++  d
  KIR61494.1 18 LGRALDVINIIATRAPEtLGVSTIARELGLPKAVAYRILKELAADEFLDFD 68
                67**********9888868***********************999888766 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.64
                 HHHHHHHHHH CS
    HTH_IclR  35 vhRlLqtLve 44 
                 ++R+L  Lv+
  KIR61494.1  97 ARRYLVRLVR 106
                 6888888887 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.95
                 HHHHHHHHTS-HH CS
    HTH_IclR  21 lselArrtglpkS 33 
                  +++++++g +++
  KIR61494.1 252 AADISAELGYHPP 264
                 58999***99986 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.1e-07   0.00041       8      52 ..      22      66 ..      19      74 .. 0.89
   2 ?   -1.6   0.1      0.72   2.6e+03      21      30 ..      90      99 ..      80     108 .. 0.72
   3 ?    2.3   0.0     0.045   1.6e+02      22      37 ..     250     265 ..     227     266 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.1e-07
                HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2  8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52
                ++v++ ++ r ++ l v+ +ar+lgl+k+ + rilk+L a  ++ 
  KIR61494.1 22 LDVINIIATRAPETLGVSTIARELGLPKAVAYRILKELAADEFLD 66
                689999999**999*************************998775 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.72
                EEEHHHHHHH CS
      MarR_2 21 dltvgelarr 30
                 l v e+arr
  KIR61494.1 90 ALDVPEIARR 99
                4678888887 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.045
                 EEHHHHHHHHTSSHHH CS
      MarR_2  22 ltvgelarrlglsksa 37 
                  +++++ ++lg+ ++a
  KIR61494.1 250 AAAADISAELGYHPPA 265
                 489********99986 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.7e-06     0.006      23      57 ..      36      70 ..      32      76 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.7e-06
                CHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB 23 atadeiaeelgvprskvYevLrsLedkGlVerekg 57
                + +++ia+elg+p++ +Y++L++L    + +  + 
  KIR61494.1 36 LGVSTIARELGLPKAVAYRILKELAADEFLDFDED 70
                6799********************99988877654 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.3e-05     0.081       9      54 ..      20      64 ..      13      68 .. 0.88
   2 ?   -0.4   0.0      0.43   1.6e+03       9      47 ..      96     130 ..      91     131 .. 0.71
   3 ?   -0.3   0.0      0.39   1.4e+03      29      57 ..     173     201 ..     154     208 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.3e-05
                HHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTS CS
        Rrf2  9 yalhallyLakeeeeepvsseeiaerqnispsylekilakLrkagl 54
                 al ++ ++a+++ e+ + +++ia++ ++++ ++ +il++L+  ++
  KIR61494.1 20 RALDVINIIATRAPET-LGVSTIARELGLPKAVAYRILKELAADEF 64
                689999999*****98.************************98776 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.43
                 HHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHH CS
        Rrf2   9 yalhallyLakeeeeepvsseeiaerqnispsylekila 47 
                 +a + l+ L ++ +e+    ++++ rq+  ++y+ ++l+
  KIR61494.1  96 IARRYLVRLVRRTGET----ATLSVRQGSIRVYIDQVLS 130
                 5566666666666654....7888888888888888875 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.39
                 HHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        Rrf2  29 eeiaerqnispsylekilakLrkaglvks 57 
                 e +  ++ + p +l+  la+ r++g+  s
  KIR61494.1 173 ERVTPSTITDPAVLRDELAHIRRQGYAVS 201
                 55666677889999999999999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1793.42
//
Query:       KIR61495.1  [L=404]
Description: acyl-CoA transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.2e-117  391.4   0.5   4.7e-117  391.2   0.5    1.0  1  CoA_transf_3  CoA-transferase family III


Domain annotation for each model (and alignments):
>> CoA_transf_3  CoA-transferase family III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  391.2   0.5  2.6e-121  4.7e-117       1     368 []      12     379 ..      12     379 .. 0.98

  Alignments for each domain:
  == domain 1  score: 391.2 bits;  conditional E-value: 2.6e-121
  CoA_transf_3   1 LaGvrVldlsqvlaGplatslLAdlGAeVIkvEppkkgDpaRkvgpseekgesayflavnrnKrsvalDlkseegrellkrLvakADVvieNfrpgv 97 
                   LaG+rVld+s++laGpl++++L+d+GA+V+k+E+p +gD++R +g+ ++ g+ ++++ + rnKr + l l+ +eg +ll+rL+a+ADV++eNfrpg+
    KIR61495.1  12 LAGLRVLDASTILAGPLCCQILGDFGADVVKIEHPTAGDSMRGHGKAKD-GHPLWWKEISRNKRTIGLSLSAPEGAALLLRLAARADVLVENFRPGT 107
                   89******************************************98776.*********************************************** PP

  CoA_transf_3  98 lerlglgyeelrainPrLiyasvsgyGqsGpkakrpgyDlvaqaasGlmsltgepdgpPvkvgvplgDivtgllaavailaallarertGkGqvidv 194
                   ler+g+g+++l+a+nP L++a+++g+Gq+Gp+a+r+g++++a+a+sG+++ltg +dgpP+ + ++l+D ++g+ a+ a+l+al++r+rtG+Gqv+d+
    KIR61495.1 108 LERWGIGPAQLHAVNPGLVIARITGFGQTGPYASRAGFGTLAEAMSGFAHLTGAADGPPTLPAFGLADSICGIAASSAVLMALRHRDRTGEGQVVDL 204
                   ************************************************************************************************* PP

  CoA_transf_3 195 slleaalallapqlleylatgevperqgnrdpaaapygvyrtkdg.wvaiaaatdkqwaalckalgrpelaedprfatnasrlenraeldaelaewl 290
                   slle +++ ++p  + y + g v +r+gnr+ ++ap ++yrt+dg wva++++ ++  +++++++g+pe+ ++p f+t a r+ +++eld  +  w+
    KIR61495.1 205 SLLEPIMTAVGPGPTVYDQLGVVEQRNGNRSVNNAPRNTYRTSDGaWVAVSTSAQAIAERVLRLVGHPEVIDEPWFRTGAGRAGHADELDGYVGGWI 301
                   *****************99******99********************************************************************** PP

  CoA_transf_3 291 aertaaewlellaaagvpaapvntleevlddpqlaarglvvevddpdygevpvvglpvrlsetparvkraaPklGedt 368
                   a+rt++e+ +++++ag ++apv +++++++dp+++a g++++vdd+d+g+v+++++ +r+s+tp+r++    +lG dt
    KIR61495.1 302 AQRTRDEVSRAFTEAGAAVAPVYSARDIAEDPHVRATGMLTTVDDADLGPVRMHNVMWRMSATPGRIRFTGRALGSDT 379
                   *******************************************************************98877777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2878.86
//
Query:       KIR61496.1  [L=279]
Description: cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-31  109.3   0.1    2.7e-31  108.6   0.1    1.3  1  Cyclase   Putative cyclase


Domain annotation for each model (and alignments):
>> Cyclase  Putative cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   0.1   1.5e-35   2.7e-31       8     135 ..      35     211 ..      22     212 .. 0.75

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 1.5e-35
     Cyclase   8 sedtpvwpdp.........................islsehtGTHlDapgHfae....k.................tidelpleelvgpavvldvsak. 59 
                 s++      p                         + +++h+GTH+Da++H+      +                 +++++   ++v+++v+ldv a+ 
  KIR61496.1  35 SPNH-----PpfwltmprrhgdmvradggsaandlLVMGTHVGTHVDALAHVSHdgllHggadaaaaqsggrftelGVHTV--APMVRRGVLLDVPAAl 126
                 3323.....1233334466777888888899999999**************966544313444444445554444444644..59**********8777 PP

     Cyclase  60 ....aaaedyeiitaedleaalakqgveikpgdivlirTgwskrl..edkeky.rn....pglseeaaewlaekgvkavGvDtlsvD 135
                     ++ ++yei t++dl+aa+++qg+ ++pgd+vlir+gw++++  +d+ +y  +    pg+++++a+wla +gv+a G+Dt++++
  KIR61496.1 127 grpdCP-AGYEI-TPADLDAAVDRQGTPVEPGDVVLIRSGWGRHFddPDRTRYvGHdsgvPGVGADGARWLAAHGVHAAGADTIAFE 211
                 754322.57866.********************************887788997225789************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1950.14
//
Query:       KIR61497.1  [L=477]
Description: 2-methylcitrate dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     6e-119  397.5   9.5   7.9e-119  397.1   9.5    1.0  1  MmgE_PrpD  MmgE/PrpD family


Domain annotation for each model (and alignments):
>> MmgE_PrpD  MmgE/PrpD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.1   9.5  4.4e-123  7.9e-119       3     433 ..       9     451 ..       8     456 .. 0.95

  Alignments for each domain:
  == domain 1  score: 397.1 bits;  conditional E-value: 4.4e-123
                 HHHHHHHH-----H..HHHHHHHHHHHHHHHHHHHHTT-HHHHTT-SSSTT-B-TT-EE-TTSS-EE-HHHHHHHHHHHHHCTS-S-BEESSSEE-GGG CS
   MmgE_PrpD   3 qlaefvaelryddlpeevverakrlilDtlGvalaglrepavkkaleavkgtggpggatvigtgerlspvkAAfvnGaaihalDfdDthlaaelhhpsd 101
                 +la f+a++ +  lp++vv+ +++++lD +G  +a+++ p++++al++v+++gg+g+a+ ig  + ++++ AAf+nG+++h+lD+dDthl+++lh++++
  KIR61497.1   9 ALAAFAADTPAAALPAAVVDSVRQRVLDVVGLCVAAVDLPSSRAALAYVRDQGGRGQARAIGVADPVPAALAAFANGVLAHSLDYDDTHLPSVLHPSAS 107
                 79************************************************************************************************* PP

                 GHHHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHCCC--SCCCT.........B-THHHHHHHHHHHHHHHTT--HHHHHHHHHHHHCT-B-BSGGGSTT CS
   MmgE_PrpD 102 vlpaalAvAealgasgkdlLtAivvGyEvqgrlglalsfnhyg........fhdtvtlgtfgaaaaaakLlgLdaeqianAlgiaatqaaglrqyrhag 192
                 v+paalA+Ae +gasg++ ++A++vG Ev +rlg+a + ++ g         h t+++gt+g a+aaa+L gLda ++ +Alg aa++aagl +++++g
  KIR61497.1 108 VVPAALAAAEFTGASGRETVAAVAVGLEVCVRLGMAGYDRAAGnsvffehgQHATSICGTLGGAVAAARLFGLDAGRTLDALGVAASMAAGLIEANRTG 206
                 *********************************9996666555555566667*********************************************** PP

                 T--CHHCHHHHHHHHHHHHHHHHHTT---TTTTT-TTTSHHHHHSTT-----S.S-SS...SHHHHC-B---SSS-CCCHHHHHHHHHHHHHHCCTCCC CS
   MmgE_PrpD 193 tkskklwaaGdAarnGveaallAkrGftGpsdilegewGflavlsggkdlelevkplgegesweienvlfKpypaerhthaaidaalklraelklkpdd 291
                  + k++ ++G+Aa+++v aa lA++G+tGp+++leg+ Gf++++++g +++++  + g g +w++ +++fKpypa ++thaaidaal+lr++    p d
  KIR61497.1 207 GTVKRI-HCGWAAHSAVSAAALARHGITGPPTVLEGRFGFFEAFLRG-EYDPAEITAGLGVDWAVPDIFFKPYPANHFTHAAIDAALALRRRGVR-PPD 302
                 ******.**************************************99.888886777779********************************996.*** PP

                 EEEEEEEE-HHHHHHC---S....---SHHHHCT-CCHHHHHHHHCS-...--CCCCSCCCCTSCHHCCHHCCEEEEE-HHHHHHHTTT---EEEEETT CS
   MmgE_PrpD 292 Iesieirtseaalriigkkg....ppenradadhSlqyvvAvalldgr...vtledfederladpevqaLrekvevvedpeltadypekrsivvvvlkd 383
                 +es+++ ++  ++r ig++     +p++ ++a++S +y+vA++l+ g    v+++df+d  + +++ +a++++v+vv+d+++++ +p++ ++v  v+++
  KIR61497.1 303 VESVTLGVPTPVIRTIGQPIdrkrRPSTGYEAQFSGPYAVAAGLHGGGvlgVGPDDFTDVLAVEESRRAVMARVDVVPDERCDEIFPHQFPAVLRVVTR 401
                 ******************999999***********************866689***************************************9999999 PP

                 S-B---EEESS-TTSGGHHHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHH CS
   MmgE_PrpD 384 ggrtleerveypkGhprnplsreeleeKfrrlaegvlseeeaereeilee 433
                 +gr+ +e+v +++G p++pl+++el  Kfr +++g+l+++ a + e   +
  KIR61497.1 402 DGREWTEEVLANRGGPARPLTTAELALKFRHNVAGRLPADVAGAVEREIA 451
                 9*************************************776655555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3572.93
//
Query:       KIR61498.1  [L=487]
Description: hydantoinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-13   50.9   0.0    4.9e-11   42.5   0.0    2.2  2  Amidohydro_1  Amidohydrolase family
      3e-09   36.9   1.0    1.4e-05   24.8   0.1    2.2  2  Amidohydro_3  Amidohydrolase family
     0.0057   16.7   0.3       0.01   15.8   0.3    1.4  1  TetR_C_7      AefR-like transcriptional repressor, C-terminal


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0   0.00076       4.5       2      59 ..      56      99 ..      55     152 .. 0.76
   2 !   42.5   0.0   8.1e-15   4.9e-11     224     343 ..     300     466 ..     190     467 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00076
                  EEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSS CS
  Amidohydro_1  2 vlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgatt 59
                   +PG +DaH H   +              + +ae ++s  ++  ++G+tt++ +  t 
    KIR61498.1 56 AFPGVVDAHQHWGIY--------------NPLAEDTASESRASAQGGVTTALTYMRTG 99
                  68**********633..............44566666666666777777776666555 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 8.1e-15
                   H........................SEHHHHHHHHHHHHTSCEEEEEECT..................TSSCCGGHHHHHHHHHHHHHHCCTTTTHC CS
  Amidohydro_1 224 i........................lrsgrealrkaldeGvkvglgtDga..................asgnslnlleelrlalklqrgllyedeeg 278
                   +                         r ++eal+  l +G    +++D+a                        + + +  ++l    gll e+ + 
    KIR61498.1 300 VtighlladittahglggkvnpplrPRADVEALWAHLLDGHVDWVVSDHAccrdevkfgeprddvfvaK-----SGFGGAEYLL---PGLLTEGRRR 388
                   333444444444444444444444488999999999999999999999886666665555555554221.....1123456666...5666667799 PP

                   HCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC.CT.............CGGGTTTCTSEEEEEEEETTEE CS
  Amidohydro_1 279 glslkealrmaTingAkalglddkvGsievGkdADlvvvdl.di.............laafvglkkdgnvkkvivkGkl 343
                   gl+l+++ +++++n+A+ +gl+  +G++++G+dADl +vd  +              +++f+g +    v+ ++v+G+ 
    KIR61498.1 389 GLPLSRVAELTSWNPARRFGLA-GKGAVAEGYDADLCLVDDdHTwtvraadsessqeYTPFEGFELTARVTDTFVRGEH 466
                   9********************7.******************733666888889999*********************85 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   4.5e-05      0.27       2      48 ..      48      93 ..      47      96 .. 0.87
   2 !   24.8   0.1   2.4e-09   1.4e-05     404     471 ..     386     473 ..     380     474 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.5e-05
  Amidohydro_3  2 viDakGrlvlPGFvDsHtHlagggvnl.rllrlpdarvtslegvltav 48
                  v D +G+l +PG vD+H H  +g +n  ++   +++r+++  gv+ta+
    KIR61498.1 48 VHDGQGKLAFPGVVDAHQH--WGIYNPlAEDTASESRASAQGGVTTAL 93
                  56889**************..777888899899999999999999986 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 2.4e-09
  Amidohydro_3 404 pdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppelaear.....................vrltvvdGrv 471
                   +++ l+l  ++ l++ +pA+++gl  + G +++G+dADl++ d+d      +++ e                        ++++vdG+v
    KIR61498.1 386 RRRGLPLSRVAELTSWNPARRFGLAGK-GAVAEGYDADLCLVDDDHTWTVRAADSESSqeytpfegfeltarvtdtfvrGEHVLVDGKV 473
                   67899*********************8.***************6655444444444444778888888888877777777777777776 PP

>> TetR_C_7  AefR-like transcriptional repressor, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   1.7e-06      0.01      22      66 ..     193     237 ..     188     246 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHT-HHHHCCHHHT.T----HHHHHHHHHHHHTTSB- CS
    TetR_C_7  22 laRlviaeaerfPelarafyeagpgrveealaayLeaavaaGrLr 66 
                 ++R v+a+ erfPela+++  +  +++ e ++ay ++  ++GrLr
  KIR61498.1 193 VMRGVQAARERFPELADQISLSLHCETAEIMSAYTRQVEQEGRLR 237
                 79******************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3393.85
//
Query:       KIR61499.1  [L=284]
Description: aldolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-34  119.6   0.2    1.5e-34  119.1   0.2    1.2  1  HpcH_HpaI       HpcH/HpaI aldolase/citrate lyase family
    4.6e-09   35.9   0.0    0.00019   20.7   0.0    2.6  2  C-C_Bond_Lyase  C-C_Bond_Lyase of the TIM-Barrel fold
  ------ inclusion threshold ------
      0.089   12.2   0.1       0.14   11.5   0.1    1.3  1  SBP_bac_3       Bacterial extracellular solute-binding protei
       0.29   11.6   4.4       0.43   11.1   0.7    3.1  2  RuvA_C          RuvA, C-terminal domain


Domain annotation for each model (and alignments):
>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.2   3.4e-38   1.5e-34       1     221 []       6     218 ..       6     218 .. 0.94

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 3.4e-38
                 EEEEEEESTSHHHHHHHCTC--SEEEEESSTSSSHHHHHHHHHHHHHHHHHHHHCTTTSSEEEEE-SSTTHHHHHHHGGHHHTTSSEEEESS--SHHHH CS
   HpcH_HpaI   1 riglflpganaalaekaaiagaDsvliDlEdavalaeKdaARvlvsealkqldalaaaasevvVRvnsldselikqdlevldlgaqvvlvPkvetaeea 99 
                 r+ l++pg++++l++ka++ gaD++++DlEdav+ a+K++AR+ v++al+ ++      +e+ VR+ns +   ++ d++vl   + +v vPk e +e +
  KIR61499.1   6 RSYLYVPGDREELLRKAPGRGADALVLDLEDAVTPARKAEARRAVAAALAAPAT-----TETWVRINSDQ---VDADVAVLSPAVAGVWVPKAE-PELL 95 
                 789*********************************************998877.....3889***9865...577888*************87.899* PP

                 HHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTT-TTSTTSHHHHHHHHHHHHTTHCEEEEE.EE.E-SSHHH CS
   HpcH_HpaI 100 levvsalrepekgirganketrllaqiEsaegvknaeeIaavegldgvflGaeDlsadlgtkrspegtevldareriltaaraagiaa.ldtvasdidd 197
                 +ev++al  +e+  + a+++  ++a iE+a+g++  +++aa++++  + lG++Dl+ +lg++  p+ te+  +r++++ a+  a i a ++ v +  +d
  KIR61499.1  96 AEVDRALTGAERRLGLAEATFAVVALIETARGILTCPQVAAAPRVLRLGLGEADLAGELGLQPGPDRTELAPIRSQVVVASAGARIVApVGPVETTLRD 194
                 ****************************************************************************9999877776443899999**** PP

                 HHHHHHTTHCEEEEEEHHHHHHHH CS
   HpcH_HpaI 198 aegflaegalfvalGfdgkllinp 221
                 ++++ a  ++    Gf   ++i+p
  KIR61499.1 195 PDRLEAGTRTLLRQGFRARSAIHP 218
                 **********************98 PP

>> C-C_Bond_Lyase  C-C_Bond_Lyase of the TIM-Barrel fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.3e-08   0.00019      10     184 ..       8     157 ..       6     188 .. 0.74
   2 !   12.5   0.0   1.3e-05      0.06     257     301 ..     202     247 ..     187     283 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.3e-08
  C-C_Bond_Lyase  10 tLYmPatrediaekilkqklegltslvlclEDavseeeveaAeenlkellkelaeaekekekeelpllFvRvRspeqlkellerlgealelltGf 104
                      LY+P++re++++k      +g+ +lvl+lEDav+ ++ ++A + ++++l++ a++            +vR+ s ++ ++++        +++G+
      KIR61499.1   8 YLYVPGDREELLRKA---PGRGADALVLDLEDAVTPARKAEARRAVAAALAAPATT----------ETWVRINSDQVDADVAVLS----PAVAGV 85 
                     59******9887765...5589999***********************99988874..........3579998877777766554....889999 PP

  C-C_Bond_Lyase 105 vlPkftsesleeylealkkaneklgkk...lllmPilEteevleketraeeleelkelldkhrerilalRiGatdllsllglr 184
                      +Pk + e l+e+ +al+ a+++lg     + ++  +Et++ +           l     ++  r+l l +G  dl + lgl+
      KIR61499.1  86 WVPKAEPELLAEVDRALTGAERRLGLAeatFAVVALIETARGI-----------LTCPQVAAAPRVLRLGLGEADLAGELGLQ 157
                     9999999999999999999998765442335556666666544...........11112223455666666666666666655 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.3e-05
  C-C_Bond_Lyase 257 valDkanGlvGKtvIhPsqialvqallvVskeeyedAldiles.ak 301
                     + +   +G+  +++IhP q+a ++a+++    e   A++++++ ++
      KIR61499.1 202 TRTLLRQGFRARSAIHPGQLATINAVFTPGPAEVAAAREVVDAlDR 247
                     5555678*********************999999999999987433 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   3.2e-05      0.14     150     207 ..      47     103 ..      14     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.2e-05
                 TTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEETTTHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 150 ngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrkgdseLrkainkala 207
                  + v a++a  ++ + +v+ n d+      ++ls++ +++ v+k+++eL++++++al 
  KIR61499.1  47 RRAVAAALAAPATTETWVRINSDQVDAD-VAVLSPAVAGVWVPKAEPELLAEVDRALT 103
                 567899999999***************9.***************************96 PP

>> RuvA_C  RuvA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.7   9.6e-05      0.43      17      40 ..      43      65 ..      42      65 .. 0.94
   2 ?   -0.2   0.2      0.32   1.4e+03      18      35 ..     239     257 ..     236     272 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.6e-05
                HHHHHHHHHHHHC-TTS-HHHHHH CS
      RuvA_C 17 ekeaekAvakvlanpgasveelIr 40
                ++ea++Ava++l ++ a++e+++r
  KIR61499.1 43 KAEARRAVAAAL-AAPATTETWVR 65
                79**********.99999****99 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHC.-TTS-H CS
      RuvA_C  18 keaekAvakvla.npgasv 35 
                 +e+  A++++++ ++g ++
  KIR61499.1 239 REVVDALDRAARdGSGVAT 257
                 5666666666666555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1948.80
//
Query:       KIR61500.1  [L=277]
Description: bromoperoxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-31  109.4   0.1    5.3e-31  108.2   0.1    1.5  1  Abhydrolase_1  alpha/beta hydrolase fold
    1.1e-22   81.7   4.5    1.3e-22   81.5   4.5    1.0  1  Abhydrolase_6  Alpha/beta hydrolase family
    1.1e-21   77.2   0.1    6.7e-21   74.6   0.1    1.8  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0067   16.3   0.0          7    6.4   0.0    2.8  3  Abhydrolase_2  Phospholipase/Carboxylesterase
  ------ inclusion threshold ------
      0.032   13.5   0.0       0.18   11.1   0.0    2.0  3  DUF915         Alpha/beta hydrolase of unknown function (DUF9
      0.045   13.5   0.0        2.8    7.7   0.0    2.7  3  Abhydrolase_5  Alpha/beta hydrolase family
       0.08   12.5   0.1        1.2    8.7   0.1    2.2  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
       0.17   10.9   0.0        0.8    8.7   0.0    1.9  2  DUF1749        Protein of unknown function (DUF1749)


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.1   2.4e-34   5.3e-31       2     257 .]      26     264 ..      25     264 .. 0.86

  Alignments for each domain:
  == domain 1  score: 108.2 bits;  conditional E-value: 2.4e-34
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHH.GG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaey.pe 96 
                    ++v++hG+p  + +w +    + L  +g++vi++D rG+g+Ss +     + y  +++ +dl+ +l++l+++ ++lvG+SmG+  ++ y+  +   
     KIR61500.1  26 PVVLIHGYPLDGASWEK--QSRELLAAGYRVITYDRRGFGKSSQPA----VGYDYDTFTADLHTLLEHLDLRDVVLVGFSMGTGEVTRYLGTHgSG 115
                    89***************..99****9********************....5677777*************************************** PP

                    GEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH....HCHHHCCHHHHHHHCHHHHHHHHHH CS
  Abhydrolase_1  97 rVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf....pdkskrfpssgsdnasslatgalks 188
                    rV++ vl+ga           ++ +k++ +    +a+++a  +a++ +++++ +  + ++  + +++     + s+ ++++++ +a++ +++a+++
     KIR61500.1 116 RVRKAVLMGA---------VPPFLLKTDDNPEGVDAQVFADIKAAVVADRPAYFKSFLDN--FYNVDvlggTRISDEAWQNSFITAVGASAYAAYA 200
                    **********.........55555555555555555555555555555555554444433..23444566699*********************99 PP

                    HHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCH.HHHHHHHHCHTSEEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 189 ieqwpttdsaklllrlrelknvlaptlvisgtsDplvpp.kaledlaqllpkkrlvvisdagHlaflegp 257
                    +     td+++ l++++       ptl+++g+ D++ p+     +l +l+ + r++vi+++ H++ +++p
     KIR61500.1 201 CVDTWLTDFRADLGKIDV------PTLLLHGDADRILPIdATANRLPELIADLRYEVIPGGPHNIAWTHP 264
                    99999999999999****......*****************************************99986 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   4.5   5.9e-26   1.3e-22       1     219 [.      27     269 ..      27     270 .. 0.67

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 5.9e-26
                    EEEE--GC.....G.CHHHHHHHHCCTCEEEEE--TTSTS-GGCS..--HHH.CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC...... CS
  Abhydrolase_6   1 vlllHGagssassW.lvapLaallaagvhvlapDlpGhGrsdppp..ldled.ladlaalldelaagggpvvlvGHSlGGalalaaapla...... 86 
                    v+l+HG ++++ sW    + ++llaag++v+++D++G+G s+ p+  +d++   adl+ ll++l+   ++vvlvG S+G+  +++   ++      
     KIR61500.1  27 VVLIHGYPLDGASWeK--QSRELLAAGYRVITYDRRGFGKSSQPAvgYDYDTfTADLHTLLEHLD--LRDVVLVGFSMGTGEVTR---YLgthgsg 115
                    8*************52..336668999999*********66555533777665588899999995..************876666...44444578 PP

                    ..EE.EEES-........----TTTS----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHH..C....CCCHCHCCCGHH......HHCC..HHCHT CS
  Abhydrolase_6  87 lvvg.vlldp.pp.....talpagllaaalelllallallrllawlsreplprlfladed..a....daawrarlarla......alla..glgll 161
                    +v++ vl+ + pp        p g  a +++ ++a+  + r++++ s   + + f++ +        d+aw+  + ++       a+++   + + 
     KIR61500.1 116 RVRKaVLMGAvPPfllktDDNPEGVDAQVFADIKAAVVADRPAYFKS---FLDNFYNVDVlgGtrisDEAWQNSFITAVgasayaAYACvdTWLTD 208
                    55557999993335543333333335555555555555555533333...2224444111221333469999999666655544433332255566 PP

                    TCCHHTT-TTGCEEE.CTT-CHHHHCHHCCCH.....STTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 162 paaawadlpvpllvl.ggeDplvprllerlla.....qagarlpvvlpgaGHlphleepdevae 219
                     +a++  + vp+l+l g++D+++p  +++ +      +a+ r+ +v+pg+ H +   +p+ v++
     KIR61500.1 209 FRADLGKIDVPTLLLhGDADRILP--IDATANrlpelIADLRY-EVIPGGPHNIAWTHPELVNR 269
                    799*********88867****888..55444444468899999.********666669998875 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.1     3e-24   6.7e-21       5     234 ..      25     259 ..      22     261 .. 0.81

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 3e-24
  Hydrolase_4   5 avvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyl.lrypdkv 101
                  a vvl+HG+       ++  ++L a+G+ v+++D rG+G+s  + +   ++d++++Dl++++e++      + ++l+G SmG   +++yl ++ + +v
   KIR61500.1  25 APVVLIHGYPLDGASWEKQSRELLAAGYRVITYDRRGFGKS-SQPAVGYDYDTFTADLHTLLEHLD----LRDVVLVGFSMGTGEVTRYLgTHGSGRV 117
                  569**************************************.7777789***************99....4579****************5555559* PP

  Hydrolase_4 102 aglilsaPalkikakl...kappllklllkllgkllpklqv.....snnlkadslsrdpevvaayeadplv.hgkitvrlllellda.mkrleeraak 189
                  ++++l++++     k+   +    +++++ + + ++ + +       +n  + ++   ++  ++  +++++   + ++  ++ ++d+ + + +++  k
   KIR61500.1 118 RKAVLMGAVPPFLLKTddnPEGVDAQVFADIKAAVVADRPAyfksfLDNFYNVDVLGGTRISDEAWQNSFItAVGASAYAAYACVDTwLTDFRADLGK 215
                  ******9664333333322222233335666666666665567777455555556666666666667777769999999999999974689******* PP

  Hydrolase_4 190 itlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHel 234
                  i++P+lllhG+aD++ + +a+++ + +l + d +++++pg+ H +
   KIR61500.1 216 IDVPTLLLHGDADRILPIDATANRLPELIA-DLRYEVIPGGPHNI 259
                  *********************999999996.************87 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.43   9.7e+02      15      34 ..      25      44 ..      15      49 .. 0.79
   2 !    6.3   0.0    0.0034       7.6     102     153 ..      88     140 ..      75     148 .. 0.77
   3 !    6.4   0.0    0.0031         7     155     196 ..     216     254 ..     189     271 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.43
                   EEEEEE--TT--SHHHHHHH CS
  Abhydrolase_2 15 avviflHGlGdsghawaeaa 34
                   a v+++HG+  +g +w ++ 
     KIR61500.1 25 APVVLIHGYPLDGASWEKQS 44
                   56999***999999887765 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0034
                    --GGGEEEEEETHHH.HHHHHHHHT-SS--SEEEEES---TTGGGTTTTS-GG CS
  Abhydrolase_2 102 ipssriiigGFSqGa.alalylaltlpkklggivafsgalplsqklessatav 153
                    ++  +++++GFS+G+  ++ yl+   + +++ +v ++ + p   k+ +++ +v
     KIR61500.1  88 LDLRDVVLVGFSMGTgEVTRYLGTHGSGRVRKAVLMGAVPPFLLKTDDNPEGV 140
                    56679*********626888888888888888888887777777777776666 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0031
                    GG-EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT CS
  Abhydrolase_2 155 kklpilqiHgeeDpvvplalgkaakevlkkllkkvelksyeg 196
                     ++p l++Hg+ D ++p+   +   + l +l+ +   ++++g
     KIR61500.1 216 IDVPTLLLHGDADRILPIDATA---NRLPELIADLRYEVIPG 254
                    479**************97544...44444444444555555 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.34   7.7e+02      11      22 ..      24      35 ..      17      49 .. 0.77
   2 ?   11.1   0.0     8e-05      0.18      93     141 ..      81     125 ..      73     151 .. 0.82
   3 ?   -3.9   0.0         3   6.8e+03      12      19 ..     218     225 ..     215     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.34
      DUF915 11 eiPtifihGygg 22
                  P+++ihGy  
  KIR61500.1 24 GAPVVLIHGYPL 35
                67********65 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 8e-05
      DUF915  93 lseLkkkYnikkfnavGhSmGglaltsYleeyaddkslPqlkklvtigg 141
                 l+ L ++  +  + +vG+SmG  ++t+Yl + ++ +    ++k v +g+
  KIR61500.1  81 LHTLLEHLDLRDVVLVGFSMGTGEVTRYLGTHGSGR----VRKAVLMGA 125
                 5678888899999****************9988876....677777765 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 3
      DUF915  12 iPtifihG 19 
                  Pt+++hG
  KIR61500.1 218 VPTLLLHG 225
                 69999999 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.72   1.6e+03       2      30 ..      27      55 ..      21      58 .. 0.76
   2 ?    2.1   0.0     0.064   1.4e+02      53      91 ..      87     127 ..      78     138 .. 0.82
   3 ?    7.7   0.0    0.0013       2.8      93     140 ..     210     257 ..     167     260 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.72
  Abhydrolase_5  2 lifYpGakveaesYaelaeklaksGyevv 30
                   +++  G   + +s+ + +++l  +Gy v+
     KIR61500.1 27 VVLIHGYPLDGASWEKQSRELLAAGYRVI 55
                   45666777777888888888888888876 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.064
  Abhydrolase_5  53 apklekfvvgGhslGGvvasrfaaeee..kiegvvflasYP 91 
                    + +l++ v+ G s+G   ++r+   ++  ++  +v++++ P
     KIR61500.1  87 HLDLRDVVLVGFSMGTGEVTRYLGTHGsgRVRKAVLMGAVP 127
                    6678899********99999998877335999999999988 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0013
  Abhydrolase_5  93 kdelselskkvlsivgteDgvlnvkslekakkflpkdtkvvsieGgnh 140
                    + +l +  +++l + g+ D +l+++   ++   l  d ++ +i Gg h
     KIR61500.1 210 RADLGKIDVPTLLLHGDADRILPIDATANRLPELIADLRYEVIPGGPH 257
                    3468889999************************************99 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00054       1.2      45      71 ..      39      65 ..      22      76 .. 0.89
   2 ?    1.2   0.0       0.1   2.2e+02     221     242 ..     210     231 ..     177     245 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00054
                   CCHGGGHHHHHTT-EEEEEE-TTSTTS CS
  Peptidase_S15 45 elelqdkvfvarGYavVvqdvrGtggS 71
                   ++e q  +++a GY v+ +d rG+g+S
     KIR61500.1 39 SWEKQSRELLAAGYRVITYDRRGFGKS 65
                   56777888*****************99 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.1
                    HHHHCT--S-EEEEEECCSSTT CS
  Peptidase_S15 221 sedadkvkapvllvgGwnDwnv 242
                    + d+ k+++p+ll++G +D + 
     KIR61500.1 210 RADLGKIDVPTLLLHGDADRIL 231
                    457899**********999654 PP

>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00036       0.8     101     153 ..      87     163 ..      60     190 .. 0.83
   2 ?   -0.3   0.0      0.21   4.6e+02     215     244 ..     204     233 ..     183     260 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00036
     DUF1749 101 eekkekvvlmGHstGsqdvlyYltssnerd........................rekvdgailqapvsDReailkvl 153
                 + + + vvl+G s G+ +v  Yl  + +                           ++v + i  a v+DR a  k +
  KIR61500.1  87 HLDLRDVVLVGFSMGTGEVTRYLGTHGSGRvrkavlmgavppfllktddnpegvDAQVFADIKAAVVADRPAYFKSF 163
                 456789*****************877664468899999999999999999888888899999999999999887655 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.21
     DUF1749 215 lsdeklektfGkvkepllillsekDefvpe 244
                     +++   Gk+  p+l+l  + D ++p 
  KIR61500.1 204 TWLTDFRADLGKIDVPTLLLHGDADRILPI 233
                 555678889999999999999999988774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 1830.48
//
Query:       KIR61501.1  [L=155]
Description: ferritin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-19   70.8   0.1    1.2e-19   70.7   0.1    1.0  1  Ferritin       Ferritin-like domain
  ------ inclusion threshold ------
       0.12   12.4   0.2       0.46   10.5   0.0    2.0  2  TFIIA_gamma_N  Transcription initiation factor IIA, gamma sub


Domain annotation for each model (and alignments):
>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.1   1.3e-23   1.2e-19       2     135 ..      18     154 ..      17     155 .] 0.93

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 1.3e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS....SHHHHHHC-SSSS..CSSHHH..HHHHHHHHHHHHH CS
    Ferritin   2 kaLneqladeltaayqylamawyvkgpgleglaeffdeqaeeerehadklaerilalGgtpvltraeleeieapke..fgsvee..vleaalehekkvt 96 
                 +aL+++lad +++ ++ ++ +w++ gp++++l+  +de a+  r had++aer  a G +p+++ a++++  a +    g+vee  ++e ++++  +++
  KIR61501.1  18 EALQQALADLINLGMLAKQAHWNLVGPHFRSLHLQLDELADLARRHADEVAERAAAVGFNPDGRAATVAAQSALPTldHGDVEEgtAVEVVVDALFALI 116
                 79********************************************************************77777774458887669************ PP

                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin  97 eslrelielaeeegDpatadfledfleeqeeheweleal 135
                 ++lr++++ +++  Dp ++d+l  + +  e++ w ++a+
  KIR61501.1 117 RTLRQAVADTATS-DPISQDLLIGVTAAVEQQHWLFRAQ 154
                 ***********95.**************99999998875 PP

>> TFIIA_gamma_N  Transcription initiation factor IIA, gamma subunit, helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.1e-05      0.46       8      30 ..      15      36 ..      13      40 .. 0.86
   2 ?   -2.0   0.0      0.43   3.9e+03      13      32 ..     118     137 ..     117     140 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.1e-05
  TFIIA_gamma_N  8 stlGtaLtdaLDeliqegkIspq 30
                   +  G+aL++aL +li+ g++ +q
     KIR61501.1 15 T-TGEALQQALADLINLGMLAKQ 36
                   4.4***************99988 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.43
  TFIIA_gamma_N  13 aLtdaLDeliqegkIspqla 32 
                    +L +a+ +  +++ Is++l 
     KIR61501.1 118 TLRQAVADTATSDPISQDLL 137
                    78888888889999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1108.72
//
Query:       KIR61502.1  [L=240]
Description: nitrate ABC transporter ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-27   96.5   0.0    2.7e-27   95.9   0.0    1.3  1  ABC_tran     ABC transporter
     0.0001   22.7   0.6    0.00017   22.0   0.6    1.3  1  AAA_16       AAA ATPase domain
    0.00017   21.5   0.1       0.51   10.1   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
     0.0024   17.6   1.1     0.0055   16.5   1.1    1.7  1  AAA_30       AAA domain
  ------ inclusion threshold ------
      0.016   15.6   0.2      0.081   13.3   0.1    1.9  2  AAA_19       AAA domain
      0.019   14.9   0.0       0.03   14.2   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
      0.036   14.3   2.0      0.052   13.8   0.7    1.9  2  AAA_28       AAA domain
      0.036   14.3   0.2       0.23   11.7   0.2    2.3  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
      0.038   14.2   0.0      0.062   13.5   0.0    1.4  1  AAA_33       AAA domain
      0.042   13.6   0.0      0.091   12.5   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain
      0.059   13.3   1.1       0.14   12.0   0.1    2.0  3  NACHT        NACHT domain
      0.066   13.6   0.5        0.3   11.5   0.2    2.3  2  AAA          ATPase family associated with various cellular a
      0.074   13.3   0.7       0.23   11.7   0.7    1.9  1  AAA_22       AAA domain
       0.13   12.8   0.0       0.17   12.4   0.0    1.2  1  AAA_23       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0   2.1e-30   2.7e-27       2     136 ..      27     156 ..      26     157 .. 0.92

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 2.1e-30
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.........esdeeiekalsk 91 
                 ++ sl+l ++e+va+vG +G+GK+tL+ l+agl++p++G++          ++   r ++g+++q+p+l + ++v++n          + +e++ +l+ 
  KIR61502.1  27 RDFSLTLAPDELVAVVGGSGTGKTTLMHLIAGLERPDAGTV----------STGGGRPRLGMVFQQPRLLDWTSVETNvrlaataagVDAAEVAPILDA 115
                 6889*************************************..........5568999************************99888888889999999 PP

                 STTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  92 lglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +gl+e + +     ps LSgGq+qrva+ara++ +p++lllDEp+
  KIR61502.1 116 VGLTEYARSY----PSVLSGGQRQRVAVARAFVVRPEVLLLDEPF 156
                 9999955555....6*****************************7 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.6   1.3e-07   0.00017       5     126 ..      18     174 ..      17     198 .. 0.58

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.3e-07
      AAA_16   5 ReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdg.giflrgkcdql.esa..ipysa.laqalareellrqlldeaesaeleawr 98 
                 R  e++q+ + ++ + +++ elv ++G sG+GK++l+  ++  le+ + g + +g  +   ++    p++  ++++ ++ +l +  +  +++  ++  +
  KIR61502.1  18 RTGERQQIFRDFSLTLAPD-ELVAVVGGSGTGKTTLMHLIA-GLERPDaGTVSTGGGRPRlGMVfqQPRLLdWTSVETNVRLAATAAGVDAAEVAPILD 114
                 8889999999999888888.8****************9999.688776355544444444344455444333777776655555555554444444444 PP

      AAA_16  99 ekleeala................................avpelagaeasrllellkrl 126
                 +  ++++a                                + ++l+   a+rl+ ll++l
  KIR61502.1 115 AVGLTEYArsypsvlsggqrqrvavarafvvrpevllldePFSALDELTARRLRLLLQQL 174
                 444444445544444444444444444444444444444433333333334444444444 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0004      0.51       2      45 ..      39      82 ..      38     106 .. 0.69
   2 !    9.6   0.0   0.00057      0.74     236     299 ..     128     189 ..     120     193 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0004
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirki 45
                 +++G  g+GK++L+ ++ +l r d+   +++  +++ g+   +
  KIR61502.1 39 VAVVGGSGTGKTTLMHLIAGLERPDAGTVSTGGGRPRLGMVFQQ 82
                689***************99976555555555555555555555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00057
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQv.iltTHSp 299
                  lS G+++  a++ a+  ++    +ll+DEp + L+    rrl  ll +l  +     +l+TH+ 
  KIR61502.1 128 VLSGGQRQRVAVARAFVVRP---EVLLLDEPFSALDELTARRLRLLLQQLWLRTPRTgLLVTHNA 189
                 56888888878888888888...9*************9999999999998887777779999986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.1   4.3e-06    0.0055      16      45 ..      34      63 ..      23     173 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.3e-06
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaa 45
                 +d +++++G+ GtGKtt++  ++ + + +
  KIR61502.1 34 APDELVAVVGGSGTGKTTLMHLIAGLERPD 63
                567899***************998877666 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   6.4e-05     0.081       9      32 ..      35      57 ..      30      68 .. 0.79
   2 ?   -0.1   0.0      0.86   1.1e+03      97     126 ..     141     171 ..      87     177 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.4e-05
      AAA_19  9 kekvllvtaGpGtGKTrvlkhiva 32
                ++++++v++G GtGKT+++ h +a
  KIR61502.1 35 PDELVAVVGGSGTGKTTLM-HLIA 57
                67899***********765.5555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.86
      AAA_19  97 ekklqeeellivDE.fqdvdelqyrLlkall 126
                 + ++ + e+l+ DE f+ +del  r l+ ll
  KIR61502.1 141 RAFVVRPEVLLLDEpFSALDELTARRLRLLL 171
                 4456677899999988999988777666665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.4e-05      0.03      96     132 ..      32      69 ..       7      75 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.4e-05
                  HCTT.SEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase  96 llkd.ktsvlvGqSGvGKStLinallpelelktgevse 132
                   l+  +++++vG SG GK+tL+  +++ ++   g vs+
   KIR61502.1  32 TLAPdELVAVVGGSGTGKTTLMHLIAGLERPDAGTVST 69 
                  55554999*****************9988888888876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.7   4.1e-05     0.052       2      20 ..      39      57 ..      38      70 .. 0.82
   2 ?   -1.6   0.0       2.2   2.9e+03     110     136 ..     197     228 ..     169     239 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.1e-05
      AAA_28  2 ivitGgestGKTtlleaLa 20
                ++++Gg++tGKTtl+  +a
  KIR61502.1 39 VAVVGGSGTGKTTLMHLIA 57
                899************9887 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.2
      AAA_28 110 dlvfllppap.....eidddgeRredleerea 136
                 d+v++l   p     e++ d  R+ ++e+ e 
  KIR61502.1 197 DRVVVLGGRPaevvrEYRIDRPRPRSPEDPEL 228
                 55555543333355566777777777666544 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00018      0.23      63      88 ..     146     171 ..     114     173 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllell 88 
                 ++++++LDE Fs lDe ++++l  ll
  KIR61502.1 146 RPEVLLLDEPFSALDELTARRLRLLL 171
                 6899************9999886665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.9e-05     0.062       1      95 [.      38     143 ..      38     168 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.9e-05
      AAA_33   1 lvllvGlpGsGKstlaerl..lkklgavllssdtlrrrlfg.tdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrrer..........a 86 
                 lv +vG +G+GK+tl + +  l++ +a ++s+   r rl    +q+++ d+t v++++  +l+++a+ + +a+ + ilda  l++ +r          +
  KIR61502.1  38 LVAVVGGSGTGKTTLMHLIagLERPDAGTVSTGGGRPRLGMvFQQPRLLDWTSVETNV--RLAATAAGVDAAEVAPILDAVGLTEYARsypsvlsggqR 134
                 7999***********9988334444488888888888777666777777777765544..477888888888888888887666655544444444444 PP

      AAA_33  87 rflklarrl 95 
                 + +++ar +
  KIR61502.1 135 QRVAVARAF 143
                 445555544 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.1e-05     0.091      12      39 ..      26      53 ..      24      62 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.1e-05
      AAA_29 12 fdghtieidlkgatlltGpsGsGKSTll 39
                f++ ++++ +++ + ++G sG+GK+Tl+
  KIR61502.1 26 FRDFSLTLAPDELVAVVGGSGTGKTTLM 53
                56667788888999*************8 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       9.6   1.2e+04      87      99 ..       7      19 ..       7      26 .. 0.70
   2 ?   12.0   0.1   0.00011      0.14       2      21 ..      38      57 ..      37      63 .. 0.90
   3 ?   -1.1   0.1       1.3   1.6e+03      90     126 ..     152     186 ..     137     192 .. 0.79

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 9.6
                EE-STT-SS-TCH CS
       NACHT 87 lDglDelvtdlgq 99
                lDg+D++ t  + 
  KIR61502.1  7 LDGVDKAFTNRRT 19
                7999999886554 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00011
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                lv++ G +G GKTtL++ +a
  KIR61502.1 38 LVAVVGGSGTGKTTLMHLIA 57
                799*************9886 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.3
                 STT-SS-TCH.........HHHHHCTTTTT--EEEEE CS
       NACHT  90 lDelvtdlgqkekqpvrtlLselirkkllpeaslllt 126
                 lDe  + l++ +++++r lL++l  +   p++ ll+t
  KIR61502.1 152 LDEPFSALDELTARRLRLLLQQLWLR--TPRTGLLVT 186
                 56777777777778888888888777..688888877 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.1   6.5e+03      64      82 ..       7      22 ..       5      29 .. 0.65
   2 ?   11.5   0.2   0.00023       0.3       2      21 ..      40      59 ..      39     175 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.1
                EETGGGHHHHHTTCCCHHH CS
         AAA 64 iDEidalaksrsgseseee 82
                +D +d+ +++r    ++e+
  KIR61502.1  7 LDGVDKAFTNR---RTGER 22
                78899999998...33333 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00023
                EEESSTTSSHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavake 21
                 ++G  GtGKT+l++ +a  
  KIR61502.1 40 AVVGGSGTGKTTLMHLIAGL 59
                5899*************975 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7   0.00018      0.23       7      28 ..      38      59 ..      34     189 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
      AAA_22  7 ilvvtGesGtGKTtllrrlleq 28
                +++v+G sGtGKTtl+  ++  
  KIR61502.1 38 LVAVVGGSGTGKTTLMHLIAGL 59
                689************9887655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00013      0.17      10      39 ..      26      56 ..      20     100 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
      AAA_23 10 frdqeidF.skgltlItGpNGaGKTTildAi 39
                frd+++ +  + l++++G  G+GKTT++  i
  KIR61502.1 26 FRDFSLTLaPDELVAVVGGSGTGKTTLMHLI 56
                788888885559***************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 1918.94
//
Query:       KIR61503.1  [L=340]
Description: hypothetical protein TK50_28265 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-09   36.1   0.0    1.2e-08   34.9   0.0    1.5  1  NMT1_2          NMT1-like family
    1.8e-08   34.3   0.0    2.4e-08   33.9   0.0    1.2  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
    1.7e-07   31.4   0.0    4.6e-07   30.0   0.0    1.7  1  NMT1            NMT1/THI5 like
    0.00034   20.2   0.0    0.00046   19.8   0.0    1.2  1  VitK2_biosynth  Menaquinone biosynthesis
    0.00092   18.7   0.0     0.0014   18.1   0.0    1.3  1  SBP_bac_3       Bacterial extracellular solute-binding protei
  ------ inclusion threshold ------
       0.17   11.3   0.0       0.26   10.7   0.0    1.3  1  NMT1_3          NMT1-like family


Domain annotation for each model (and alignments):
>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   4.2e-12   1.2e-08      23     242 ..      64     272 ..      55     280 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 4.2e-12
      NMT1_2  23 vakekglfakeGltvelekqaswaelrdkllagelDaahvltpapllidlGiggakadmkvlaslnlnGqaitlsnklkdkkvsdakalkdlvakkkas 121
                 va++ gl ak+Gl ++ ++  + ++  ++ll+g lD+ ++    pl++++  ++  + ++v  sl  +G  i+ ++       s  ++++dl       
  KIR61503.1  64 VAEQFGLEAKHGLRLDRKAGGGPGAGQEQLLTGVLDIYAF---GPLGATEVNTSGHDVVIVGPSLWNHGRWIVPAD-------SPYQSIADL------- 145
                 8999999*******999999999999**********9999...566666666444577777789999999999986.......566666666....... PP

      NMT1_2 122 kplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidgfcvgePwnaqavaegiGvtaltsqelwkdh.....Pekv..lgvr 213
                 k+ k++v  p+s +  +   + a +G+  +++ kl + +p +  a  ++g++d+ ++ eP   ++v  g  +++++ +elw++      P      +vr
  KIR61503.1 146 KGKKVGVQPPSSDTYRAAALASAVNGIRFDREFKLFTGQPIANLALYERGDLDAIIAIEPNATRLVGSGN-RQLASVGELWQKGtgdssPLFLngTAVR 243
                 6789*********99999999999****************9999**********************9999.***********985555566558899** PP

      NMT1_2 214 edfveknpntaralvkalleAtkwldakk 242
                 +d++++n++ta+a v+  leA +++++++
  KIR61503.1 244 RDWLAANRETAKAYVDFTLEAWRLIKQDP 272
                 ************************99765 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   8.2e-12   2.4e-08      43     186 ..      90     225 ..      69     281 .. 0.79

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 8.2e-12
                     HHHHHTTS-SEEE--HHHHHHHHHHS-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT--HHHH CS
  Phosphonate-bd  43 vealragqvDiaflgplayvqardqagveplatrvrsdGsasyrsviivradsdiqsledLkgktiafvspsStsGylvpaalLvkeagldpedd 137
                      e+l +g +Di  +gpl++ +++   g +++ +  +       ++ +iv+ads++qs++dLkgk++++  psS   y + a    + +g++ ++ 
      KIR61503.1  90 QEQLLTGVLDIYAFGPLGATEVNTS-GHDVVIVGPS----LWNHGRWIVPADSPYQSIADLKGKKVGVQPPSSDT-YRAAALAS-AVNGIRFDRE 177
                     588999****************965.5544444433....357*****************************987.44444433.679*****99 PP

                     SSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH-HHHHTTEEEEE CS
  Phosphonate-bd 138 fsevfsgshdaavlavlsgdadaaavsadaledlvaegpedkdelrvia 186
                     f+  f+g   a+++   +gd da    + ++++lv +g  + +++  ++
      KIR61503.1 178 FKL-FTGQPIANLALYERGDLDAIIAIEPNATRLVGSGNRQLASVGELW 225
                     998.9*99999999999*****999888888888876655555555554 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.6e-10   4.6e-07       9     213 ..      64     272 ..      59     274 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.6e-10
                 HHHHTTHHHHTTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--EEEEEECCC--SSGGGGTTSEEEE-S-TTHHHH CS
        NMT1   9 vAkekGYFkeeGldVeivepadpsdatelvasgkadfgvsyqesllaarakglpvvsvaallqeplsglivlkdsgikspkDLkGkrigyvgspfekal 107
                 vA++ G  +++Gl ++ +++++p+   e + +g  d+    +   +    +g +vv v+  l  +   +iv +ds+ +s++DLkGk++g+++ p +++ 
  KIR61503.1  64 VAEQFGLEAKHGLRLDRKAGGGPGAGQEQLLTGVLDIYAFGPLGATEVNTSGHDVVIVGPSL-WNHGRWIVPADSPYQSIADLKGKKVGVQP-PSSDTY 160
                 5666666789***************************9999999999*************99.8899*************************.555555 PP

                 HHHHHHH..TT--GG.G-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT-----SEEE...EEEHHHHHH-HHHHHHHHH CS
        NMT1 108 lkallak..dggdps.dvtlvnvggtslakalltgkvDaaiggyenwegvelesegkelrifaladlgvpdyyslvl...itnekllkenpelvkkFlr 200
                   a la+  +g+ ++ +++l + + +   +   +g  Da+i++  n   +      + +++ +l++ g  d   l l   ++  ++l++n+e++k+ ++
  KIR61503.1 161 RAAALASavNGIRFDrEFKLFTGQPIANLALYERGDLDAIIAIEPNATRLVGSGNRQLASVGELWQKGTGDSSPLFLngtAVRRDWLAANRETAKAYVD 259
                 444444323677665256666665555554567899**9996666655555445555666677777776444443332225778999999999999999 PP

                 HHHHHHHHHHHSH CS
        NMT1 201 AlkkGyeyalahP 213
                  + +++  + ++P
  KIR61503.1 260 FTLEAWRLIKQDP 272
                 9999999999998 PP

>> VitK2_biosynth  Menaquinone biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.5e-07   0.00046     143     226 ..     194     283 ..     136     297 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.5e-07
                     TTS.SEEEEECCHHHTGGGGTTEEEEEHHHHHHHHHS..S-EEEEEEEEECC.CHH..HHHHHHHHHHHHHHHHHHHSHHHHHHHHHCCS CS
  VitK2_biosynth 143 ege.dagLlIgesaltyaeeglkkvlDLgelWeeltg..lPlvlglwvvrrd.laa..eaakeleealreSveyalahldevaeyaaera 226
                     +g  da+++I  +a +   +g  ++++ gelW++ tg   Pl l + +vrrd laa  e+ak+ ++   e+ +   +++  +a+y+a + 
      KIR61503.1 194 RGDlDAIIAIEPNATRLVGSGNRQLASVGELWQKGTGdsSPLFLNGTAVRRDwLAAnrETAKAYVDFTLEAWRLIKQDPTLIAKYHADYG 283
                     4557999999999999999999**************888*************755589***************************88764 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   4.7e-07    0.0014      88     177 ..     130     221 ..     117     261 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4.7e-07
                 EEEEEETTSHGTCCHSSCGCGTTSEEEEETTSH...HHHHHHHHHHC......TSEEEEESSHHHH.HHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx......xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  88 vllvrkkdaskissiksladLkgkkvgvqagst...aeellkeelkk......gaeivefdtleea.lqaLkngrvdavvadspvlaylvkknpdkkvv 176
                 + +v+++     s ++s+adLkgkkvgvq  s+    +++l++   +      + e + f  ++ a l++ + g  da++a +p++  lv   + + + 
  KIR61503.1 130 RWIVPAD-----SPYQSIADLKGKKVGVQPPSSdtyRAAALAS---AvngirfDREFKLFTGQPIAnLALYERGDLDAIIAIEPNATRLVGSGNRQLAS 220
                 6678844.....3467777**********98774333333443...234566766778999999996677899*************9999888877766 PP

                 E CS
                 x RF
   SBP_bac_3 177 l 177
                 +
  KIR61503.1 221 V 221
                 5 PP

>> NMT1_3  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.8e-05      0.26      91     144 ..     127     181 ..     107     211 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.8e-05
      NMT1_3  91 evfqlvvskdsgigsiadlkgkrvsvGpegsGtegsarailealgls.ekdlkll 144
                 ++  ++v +ds  +siadlkgk+v+v p++s t  +a    ++ g+  ++++kl+
  KIR61503.1 127 NHGRWIVPADSPYQSIADLKGKKVGVQPPSSDTYRAAALASAVNGIRfDREFKLF 181
                 677888999**********************999888777777777656666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2436.01
//
Query:       KIR61504.1  [L=300]
Description: nitrate ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-10   40.4   0.0    0.00026   21.0   0.0    2.5  2  NMT1       NMT1/THI5 like
    2.6e-05   24.1   0.0     0.0017   18.1   0.0    2.2  2  NMT1_2     NMT1-like family
    0.00015   21.3   0.0    0.00023   20.7   0.0    1.3  1  SBP_bac_3  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   4.4e-08   0.00026       5      39 ..      17      51 ..      15      58 .. 0.88
   2 !   16.7   0.0     9e-07    0.0054      74     154 ..     103     182 ..      85     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 4.4e-08
                HHHHHHHHTTHHHHTTEEEEEE--SSTTHHHHHHH CS
        NMT1  5 aglyvAkekGYFkeeGldVeivepadpsdatelva 39
                 +++v+ e+GYF+eeG+d+e+v+p+    +++ ++
  KIR61504.1 17 LPYLVGLEHGYFAEEGIDLELVAPGSYDAVLKPIE 51
                5899********************99888877766 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 9e-07
                 -EEEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT-.-GGG-EEEE-.TT-.HHHHHHCTSSSEEECEETTTHHH CS
        NMT1  74 lsglivlkdsgikspkDLkGkrigyvgspfekallkallakdgg.dpsdvtlvnvggts.lakalltgkvDaaiggyenwegv 154
                  ++++v+ ds+ik p+ L+ +++g++    + +l  a+ + +g  + +++++v +gg    + +l +g+vDa+   +e w + 
  KIR61504.1 103 SQAIFVRPDSDIKHPQGLANRTVGVNFHHGSHYL--AIQSLEGFlEQDEIKVVHAGGPAeRFRKLRDGEVDAVA-LMEPWTTA 182
                 5789********************9995444433..3344444449999*****998751567*********98.88877654 PP

>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0055        33      19      50 ..      17      48 ..       4      59 .. 0.80
   2 !   18.1   0.0   2.9e-07    0.0017     122     198 ..     121     193 ..      87     230 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0055
      NMT1_2 19 aplvvakekglfakeGltvelekqaswaelrd 50
                 p +v  e g+fa+eG+++el++  s  ++++
  KIR61504.1 17 LPYLVGLEHGYFAEEGIDLELVAPGSYDAVLK 48
                4778999**************99877766665 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 2.9e-07
      NMT1_2 122 kplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpp.pqmvanlkagtidgfcvgePwnaqavaegiGvtalts 198
                 ++ +++v f  + h l+++ +   +G+  ++++k+v+  + ++  ++l+ g++d+ +  ePw  +  ae++G+ ++t+
  KIR61504.1 121 ANRTVGVNFHHGSHYLAIQSL---EGFLEQDEIKVVHAGGpAERFRKLRDGEVDAVALMEPW--TTAAEKLGYVLVTE 193
                 566899999999999999876...599999*******9886999******************..66678888887765 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.8e-08   0.00023      84     163 ..     101     180 ..      93     230 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.8e-08
                 EEEEEEEEEETTSHGTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC......TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  84 sagqvllvrkkdaskissiksladLkgkkvgvqagstaeellkeelkk......gaeivefdtleealqaLkngrvdavvadspvl 163
                 +a+q+++vr +     s+ik ++ L++++vgv   + ++ l+ ++l +      ++++v+    +e +++L++g+vdav+  +p  
  KIR61504.1 101 VASQAIFVRPD-----SDIKHPQGLANRTVGVNFHHGSHYLAIQSL-EgfleqdEIKVVHAGGPAERFRKLRDGEVDAVALMEPWT 180
                 6899*****54.....4799999**********9999885655533.3477778999**********************9877744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2224.06
//
Query:       KIR61505.1  [L=685]
Description: hypothetical protein TK50_28280 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.3    7.0  12.5         15    5.8   0.8    4.0  3  Adeno_PIX  Adenovirus hexon-associated protein (IX)


Domain annotation for each model (and alignments):
>> Adeno_PIX  Adenovirus hexon-associated protein (IX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.8   0.00084        15      40      84 ..      12      56 ..       3      71 .. 0.82
   2 ?    3.3   0.5    0.0051        91      41      99 ..     234     290 ..     223     296 .. 0.84
   3 ?    3.5   0.4    0.0044        79      50      82 ..     584     616 ..     541     640 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00084
   Adeno_PIX 40 tltyetvsgtpletaasaaasaaaatargivtdfaflsplassaa 84
                +lt   ++g+p  +a +aa s+a+  a g +t++a l  l  + a
  KIR61505.1 12 ALTTPLLAGSPAGAAPAAAPSTATGPAGGPLTNLAHLDFLRQAVA 56
                67788899****************************998877655 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.0051
   Adeno_PIX  41 ltyetvsgtpletaasaaasaaaatargivtdfaflsplassaasrssarddkltalla 99 
                  ty+tv g    t a   a  a ata  ++   a++     saa r+  r     a la
  KIR61505.1 234 GTYQTVDGE--RTPAWLIADGADATAEAVLGLAAYVRAGGGSAARRALRRFAEGVAALA 290
                 589999996..5889999999***********************999888776666666 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.0044
   Adeno_PIX  50 pletaasaaasaaaatargivtdfaflsplass 82 
                 p e  a  +a  a+a+  g v d  +l pl s 
  KIR61505.1 584 PGELPAGVTALVATAAGDGAVVDAVMLEPLLSR 616
                 677888889999999999***********9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4893.25
//
Query:       KIR61506.1  [L=356]
Description: glycosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-32  112.1   0.0    1.3e-31  109.8   0.0    1.9  1  Glyco_hydro_130  beta-1,4-mannooligosaccharide phosphorylase


Domain annotation for each model (and alignments):
>> Glyco_hydro_130  beta-1,4-mannooligosaccharide phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   7.2e-36   1.3e-31      52     311 ..      43     352 ..      17     354 .. 0.79

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 7.2e-36
                      .EEEEEEEEETTS-E.EEEEEE..ESSSSS-EE-SS.---EE-TTS-....B--EEEEEEEEETT..EEEEEEE.EESSSEEEEEEEESSSSSE CS
  Glyco_hydro_130  52 RvvllYrkyvsdiaslrigled..lkdGikktlepe.evvlpedkqe....llgveDPRvvkins..kyyltYtgrdlkgvrievattkdlltv 136
                      R++ll r   +  +s r+gl++  l dG+    + e +v++p+  +e      gveDPR + + +  +  +tY +++  g+r+++a ++dl  +
       KIR61506.1  43 RLHLLPRLVAEGNVS-RVGLAEveLRDGVPAGVRREgVVLAPDEGWErgknNAGVEDPRTTWVPDlgRHLMTYVAYGPLGPRLALAVSEDLRHW 135
                      444444444555555.67777522679988877776255678888872222467********9865589************************* PP

                      EEE-.-SS.SSSE..........EEEEE-SS-B.....TTBEEEEEE...................SS-S---EEEEEE.SSSS-BEEEEEE.E CS
  Glyco_hydro_130 137 krle.eki.alielkkdeislatkdgalfpkki.....kgkylmfsr...................vhtvsekifLavs.ddlvlwenelee.l 202
                      +rl+ +++  + +l  d   +  kd++ fp+ +     ++ + m++r                   v +  + i+++    d+v  +    + l
       KIR61506.1 136 RRLGpVQFgYQPDLDTDLNMFPNKDAVFFPEPVpgpdgRDCFAMLHRpmwdlgwfrpgegvhlpagVTDERPGIWISYVpVDEVRADVGALVrL 229
                      ****5333123456788899999********9999999999************99999996666665566778899887678888543333334 PP

                      -.--SS-GGGS....SEEEE-S--EEETTEEEEEEEEEE..........TTEEEEEEEEEEE-SS-..SEEEEBSS-SB-S-SHHHHSSSSSSB CS
  Glyco_hydro_130 203 a.ssreimfenpf.elkigwgtppvetkeglLvlihgvd..........teklvYrvgaalldleg..kvlartkeyilePeeeyEeyGdrpnv 282
                               e p+ elkig+g+pp+ + eg+L++ hgv+          t++  Y  ga+lld  +  +vlart e+il+Pe  +E+ G +pnv
       KIR61506.1 230 RgHRCVALSEFPYeELKIGAGPPPLRVPEGWLLIHHGVTgeipegfdptTQRVEYAAGAMLLDPADpsRVLARTAEPILVPELAEERSGTVPNV 323
                      4233344556677458*********************7777888888889999*************999************************* PP

                      EEEEEE.EE-TTEEEEEEEETTTEEEEEEE CS
  Glyco_hydro_130 283 vFpcga.lveeekvlvyyGaaDtaiglaei 311
                      vFp ++  v++   +v+yG aD  ig+a  
       KIR61506.1 324 VFPTAIeEVDG-VHYVFYGMADSRIGVARL 352
                      ***99945555.599************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       153  (0.00853366); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2658.26
//
Query:       KIR61507.1  [L=286]
Description: sugar ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-17   63.4  15.3    2.3e-17   63.4  15.3    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.06   1.1e+03     116     139 ..      18      36 ..      15      90 .. 0.72
   2 !   63.4  15.3   1.3e-21   2.3e-17       3     167 ..      93     262 ..      91     277 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.06
  BPD_transp_1 116 lafggllggavlleflgswpGlgt 139
                   l++++l+gga++ +f +      +
    KIR61507.1  18 LRAVALFGGALVFLFPFY-----Y 36 
                   666777777777777662.....2 PP

  == domain 2  score: 63.4 bits;  conditional E-value: 1.3e-21
  BPD_transp_1   3 llGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   ++G+la+    + +++++  l  l+ +++ +P+ +l+i+l+++  i  + g +  ++ ++l + +  ++++++r+++ +lp++l  aar++Ga++ +
    KIR61507.1  93 VFGVLAGyalARLRFRGRGTLFALVLLVQVIPFQLLLIPLYVL--IVRGYGLADSYLGMILPFAINTTAVFVFRQFFLQLPDELFAAARVDGAGELR 187
                   56666666666****************************9975..88899999999***************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis.....nggvlalviavll 167
                   +++ v+lP++ p ++t ++l+f+g +++++++ +++ +    ++l  ++ +y  + ++     +g+vla+++++++
    KIR61507.1 188 VLWSVALPLVRPALLTVVLLTFIGPWNEFLWPFLVTKQAD-MQPLAVSLANYISNVAAraanpYGAVLAGACVLAA 262
                   ************************************7754.33444444444444444679875555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2119.32
//
Query:       KIR61508.1  [L=107]
Description: hypothetical protein TK50_28310 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 837.02
//
Query:       KIR61509.1  [L=456]
Description: hypothetical protein TK50_28315 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-13   51.0   0.0    5.6e-13   49.5   0.0    1.6  1  SBP_bac_1   Bacterial extracellular solute-binding protein
    2.4e-07   30.9   0.0    1.1e-06   28.6   0.0    1.9  2  SBP_bac_8   Bacterial extracellular solute-binding protein
      0.005   16.6   0.3          2    8.1   0.0    2.8  3  SBP_bac_11  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   9.4e-17   5.6e-13      12     313 ..      59     356 ..      53     358 .. 0.76

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 9.4e-17
                 HHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEE.CGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCEEEES. CS
   SBP_bac_1  12 alvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviav.dndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkildskvly. 108
                 a++ +af++ ++gi+V ++ +   ++ q l+  +  G++p Dv+      +++ ++++g l pld++v a+ a   ++      +  +++      +y 
  KIR61509.1  59 AVL-DAFTA-ETGIEVSYQGT--RDVSQVLRSGVDRGRPP-DVAVLpRLNDLKAYVRSGDLFPLDDVVPADEAGLAPQLLRLPPPGATDAR-----VYg 147
                 445.99*99.8*******998..9999999********66.*****9888889******************88887776666444443332.....555 PP

                 EEEE.E.EEEEEEETTTHHCTTGGG....SHBHHHHHHHHHHHHHHCTCT...HCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT...HHCSHHHHS CS
   SBP_bac_1 109 vPly.a.argliYNkdlfekagldp....pwtWdelveaakklkekgkkp...iggarggsasgtayyfalalakslggkvfdkdgg...gldnpegvt 195
                 + +  +  ++++Y      ++g +     p tW elv++ + l+  g++p   + g+   s++  +++    l+  +g++v+  ++    +       +
  KIR61509.1 148 LSVAvHaKSLIWY---RTNPPGGPTvtspPATWAELVALTRALDTRGGAPwclGMGSQPQSGWPGTDWIEDILLHRSGQTVYQRWAAgqqA-------W 236
                 5555555******...3334443337779************************99999999999999999999999998888888653431.......2 PP

                 ..HHHHHHHHHHHHH..HHHHHHTTEEECSSHHHHHHHHH.....TTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE.. CS
   SBP_bac_1 196 ..aatylvklyavan..ltkelkgkgaenkdgaaalalfe.....aGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi.. 283
                       + + ++ a+  + ++ +++  +n+d+a    l++      +  a +ivg++       + ++   + + ++  +e++++p Pa+     +   
  KIR61509.1 237 tsPEVRGAWQEWGALvgAGRGSPNPLLTNFDVAGPGMLVSpptcfLDHQASFIVGSYR------KFLAEHPERSEPGRSPEFDFFPSPAFGATDAPVre 329
                 2323333333333330034466666666666666555555999998888888999999......88888888888888999999999988555555598 PP

                 EEEEEEEEBTTCSTHHHHHHHHHHHTSHHH CS
   SBP_bac_1 284 lgayglaipkgsknpeaAkkFldfllspea 313
                 ++ + ++++++s++   A+++++fl+++ a
  KIR61509.1 330 VSEDVVGMFADSPQ---ARALIRFLAGEPA 356
                 99999999999999...9******998865 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.9e-10   1.1e-06       2     152 ..      60     228 ..      59     258 .. 0.67
   2 ?   -0.5   0.0      0.15   8.8e+02     233     272 ..     340     377 ..     334     383 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.9e-10
                 HHHHHHHH-TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH.........-HH.HHHTT--TS.----EEE CS
   SBP_bac_8   2 lakefekktgvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnldd.........ltd.alaavgydgklygvPya 90 
                 + ++f+++tg++v +  +++ d+ q l++ +  g  pd+  v++  ++l++++ +g l +l+d+  +d+         l++  ++    d  +yg+ +a
  KIR61509.1  60 VLDAFTAETGIEVSY--QGTRDVSQVLRSGVDRGRPPDVA-VLPRLNDLKAYVRSGDLFPLDDVVPADEaglapqllrLPPpGAT----DARVYGLSVA 151
                 789**********98..899******************97.788899*****************999998865554443322444....5668888888 PP

                 EEEE-EEEEEHHHHHHS.....---BHHHHHHHHHHH......HHH-SE.....GG--.-GGGGGGTHHETTEE---H CS
   SBP_bac_8  91 setpyvliynkdlleka....edpktwdellaaakkl......kgkfgl.....pdpa.sgwlqaallakdgkslddd 152
                 +    ++ y++          ++p+tw+el+a+  +l      +++ g+     + ++ ++w + +ll  +g+ + + 
  KIR61509.1 152 VHAKSLIWYRTNPPG-GptvtSPPATWAELVALTRALdtrggaPWCLGMgsqpqSGWPgTDWIEDILLHRSGQTVYQR 228
                 887546666655543.245778***********999954433333334443322232224566665555444444333 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.15
                 -HHHHHHHHHHHHHTTSHHHHHHHHHH---BS-S-TTTHH CS
   SBP_bac_8 233 knedlaAldFlkwltspenqaalaektgyipvnksaalsp 272
                 + ++  A +++++l+ + + + + e++g + ++ +aa+++
  KIR61509.1 340 DSPQ--ARALIRFLAGEPARRVWREASGHLAFTLNAATDA 377
                 4444..778*******************999999999865 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00033         2      11      62 ..      55     108 ..      52     123 .. 0.77
   2 ?   -1.6   0.0      0.31   1.8e+03     161     189 ..     150     178 ..     117     193 .. 0.65
   3 !    5.3   0.0    0.0024        15     204     227 ..     340     363 ..     285     364 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00033
                 HHHHHHHHHHHHHH-..--EEEEESSHHHHHHHHHHH..-SEEEESSH.HHHHH CS
  SBP_bac_11  11 aalrelaaaFeahtg..vkvevsaggsgklarqiadgarpDvwipassawlell 62 
                 +++ ++ +aF+a+tg  v ++++   s+ l++ + +g++pDv ++   + l++ 
  KIR61509.1  55 WPFLAVLDAFTAETGieVSYQGTRDVSQVLRSGVDRGRPPDVAVLPRLNDLKAY 108
                 6788999********44445677777888888899999****998766666555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.31
                 EEEEEHHHHH..HSTTSSEEEE--TTT-- CS
  SBP_bac_11 161 agivyeseakaaengdkleavylpeglnl 189
                 +++ ++s++ +++n+++++ v+ p+ +++
  KIR61509.1 150 VAVHAKSLIWYRTNPPGGPTVTSPPATWA 178
                 44455555555678888888855555553 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0024
                 --HHHHHHHHHTTSHHHHHHHHHT CS
  SBP_bac_11 204 kreaAraFlafLrspeaqailrky 227
                 ++  Ara+++fL++++a++++r++
  KIR61509.1 340 DSPQARALIRFLAGEPARRVWREA 363
                 5679****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3594.07
//
Query:       KIR61510.1  [L=738]
Description: hypothetical protein TK50_28330 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-61  207.8  14.0    2.7e-61  207.2  14.0    1.2  1  PknG_TPR       Protein kinase G tetratricopeptide repeat
    1.2e-27   96.9   0.0    1.6e-27   96.5   0.0    1.1  1  Pkinase        Protein kinase domain
    4.4e-13   49.1   0.0    6.6e-13   48.5   0.0    1.1  1  Pkinase_Tyr    Protein tyrosine kinase
      7e-13   48.9   0.5      7e-13   48.9   0.5    2.2  2  PknG_rubred    Protein kinase G rubredoxin domain
    0.00048   19.8   0.0     0.0011   18.7   0.0    1.5  1  WaaY           Lipopolysaccharide core biosynthesis protein (
    0.00072   20.0  11.6     0.0015   19.0   0.8    3.6  3  TPR_19         Tetratricopeptide repeat
  ------ inclusion threshold ------
        0.4   10.4   5.3       0.19   11.5   0.5    2.8  2  zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
        5.1    7.0   9.4        6.6    6.6   2.9    3.2  3  zinc_ribbon_2  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> PknG_TPR  Protein kinase G tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.2  14.0   1.2e-64   2.7e-61      23     339 ..     414     732 ..     388     733 .. 0.86

  Alignments for each domain:
  == domain 1  score: 207.2 bits;  conditional E-value: 1.2e-64
                 GGHHHH---------HHHHHHHS--B---TTSTTHHHHHHTTT--HHHHHHHHHHHHT---------GCC-SHHHHHHHHHHHHCT-HHHHHHHHHH.. CS
    PknG_TPR  23 tdvvvdgverdeklearevvaaLpvPlvdpedpaAalLaalvhsdpaelldsleaaresaleadgvdaseslevpLaevrahldlGdveearelLde.. 119
                 td ++    ++ +  + +v++ LpvP     dpa + L+ + + dp++ll  l a +           + s+ev+L   rahl+l  ++ a+e L+   
  KIR61510.1 414 TDPAAADLPHHGRPVPPSVATGLPVPRPAAGDPATPALHLIGALDPRSLLARLAAFE-----------TASVEVQLSRCRAHLELAGAGPAEEALAVaa 501
                 66666666777788899*******************************999987733...........3589************987777777776422 PP

                 ..HHHHH---HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHT---T.T-HHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHH CS
    PknG_TPR 120 ..leeeveedWrldWyrglaeLlegdyeeAaaeFdevlaalpGEiaPklaLAataElagetde.ekyYrtVwrtdrgvvsAaFGlaRqlaaagdraaAv 215
                   l+e+ ++dWrl W++gl +L+    +eA+++Fd+ +a lpGE+aPklaL   aE  g++ e ++yYr Vwr dr+  sAaFGlaR + a+gdraaAv
  KIR61510.1 502 glLAEDAAADWRLVWHHGLLALARSAVAEATERFDRAYAELPGEVAPKLALGYCAEQRGDAGEaTRYYRAVWRRDRSAASAAFGLARLRLADGDRAAAV 600
                 33688999**************************************************99875269********************************* PP

                 HHHHTS-TTSTTHHHHHHHHHHHCH---------HHHHHHHHHHHHTS-TT.....SCCHHHHHHHHHHHHHHHCTT--...-SSSEETTEESSHHHHH CS
    PknG_TPR 216 aaLdeVpatSrhyttArltavllllsgrpvaeldeadlreaarrveaLped.....eeralqlrvlVlgaALdWlragk...assetlLgvpfterglr 306
                 + Ld Vp+ Srhy +A+++av +l +    +    ++l+ea+rr+ +L+ d      e + ++ ++  +aAL  +  +     + ++ +g +  er+lr
  KIR61510.1 601 RFLDGVPRVSRHYDAAQVAAVRVLATRLGDDPPGAEHLNEAVRRLGRLRLDggarhGEARDRMTAVLRQAALGRVLVHGaagLAGGETMGDAPSERSLR 699
                 *********************9988777777788999***********964211113456788888999****99988623344568999999****** PP

                 HHHHHHHHCCCHH-SSHHHCHHCCHHCCHH--X CS
    PknG_TPR 307 eglEaalRalAreaperahRyaLvdlANaiRpr 339
                 + lE++lR+lAr+a + ++   Lvd+ANa+Rp 
  KIR61510.1 700 RLLESSLRDLARQARTANDHGVLVDRANAVRPL 732
                 ********************************6 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   7.3e-31   1.6e-27       1     252 [.     125     385 ..     125     393 .. 0.85

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 7.3e-31
                 EEEEEEEEEESSEEEEEEEETT.TTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE......SSEEEEEEE--TTEBHHHHHH.. CS
     Pkinase   1 yekleklGeGsfGkVykaveke.tgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee......kdelylvleyveggeladlle.. 90 
                 ye++  l +G+ G+Vy a + + ++k +A+K++ ++ + +      ++E ++l +l+hpnivr++++++        ++ y+v+ey+eg  l++l +  
  KIR61510.1 125 YEVVGYLARGGLGQVYLAEDVHlDRKPMALKRLINKTEPNALA-IEVSERQFLTTLDHPNIVRIFNFVSAedrlfgGQTSYIVMEYLEGMPLHELWQaa 222
                 566777889*********986537889******9998887664.7799*********************977777777889***************988 PP

                 .....HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGG.S-HHHHTTSCBSHHHHHHHH CS
     Pkinase  91 .....rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseY.lAPEvlkeneyskkvDvWsl 183
                        ++l+  e+  + ++il++l++lH kg+++ Dl p N++    + +K++D+G +++++ ++  +  v t++Y ++P  l +++++  +D++++
  KIR61510.1 223 vdparPAVTLPLVEVLAYGHEILTALDHLHGKGLLYTDLHPGNVIRT-ADRVKLIDLGGVRRADDRH--SPKVRTETYgVSPTELAAHGFTVRSDLYAV 318
                 8887555667777999****************************988.999**************98..45555666658999999************* PP

                 HHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS-HHHHHHHHHHT-SSGCCS CS
     Pkinase 184 Gvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeaseiseeakdllkkllkkdpkkR 252
                 Gv+l el   +pp+ +  ++++  +e      ++   + e++  ++ ase+se++k +l++ll   p +R
  KIR61510.1 319 GVMLREL--SRPPLDSPGRETDLGAESFGRLVTRAA-HpEWRRRFASASEMSEQLKGVLRELLPAPPADR 385
                 *******..899999666666555555553333333.3599999*******************9999988 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0     3e-16   6.6e-13       7     199 ..     131     326 ..     126     353 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 3e-16
                  EEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSS......EEEEEE--TTEBHHHHHHHT... CS
  Pkinase_Tyr   7 lGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeep......llivteyvkgGdLlkfLrkk... 95 
                  l++G  G+V+ ++     + ++   a+K l ++++ +  +  ++e +++++l+hpniv++  +++ e++       +iv+ey++g  L++  ++    
   KIR61510.1 131 LARGGLGQVYLAEDV---HLDRKPMALKRLINKTEPNALAIEVSERQFLTTLDHPNIVRIFNFVSAEDRlfggqtSYIVMEYLEGMPLHELWQAAvdp 225
                  789999999999888...788899******9999999999999*********************944444444449**************99999888 PP

                  ..CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHH CS
  Pkinase_Tyr  96 ..ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsf 191
                       +l l ++l + +++  ++++L+ k l+  dl   Nv+ +  + vk+ D G  r+   d   +++ + ++    ++p  l ++ ft++sD ++ 
   KIR61510.1 226 arPAVTLPLVEVLAYGHEILTALDHLHGKGLLYTDLHPGNVIRT-ADRVKLIDLGGVRRA--D--DRHSPKVRTETYGVSPTELAAHGFTVRSDLYAV 318
                  77777888999*****************************9766.889**********99..3..333444555566689999999************ PP

                  HHHHHHHH CS
  Pkinase_Tyr 192 GvllwEif 199
                  Gv+l E+ 
   KIR61510.1 319 GVMLRELS 326
                  ****9985 PP

>> PknG_rubred  Protein kinase G rubredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.89     2e+03     112     121 ..      14      23 ..       7      32 .. 0.77
   2 !   48.9   0.5   3.1e-16     7e-13      87     139 .]      72     124 ..      51     124 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.89
                  -SEEE-TTT- CS
  PknG_rubred 112 aseGtCpkCg 121
                  + +G+C+ Cg
   KIR61510.1  14 DADGFCEVCG 23 
                  4679999998 PP

  == domain 2  score: 48.9 bits;  conditional E-value: 3.1e-16
                  ---GGG-B-TT..T--B-S---SS----SEEE-TTT--EEE-S-SS-TT-EETTT CS
  PknG_rubred  87 vvpEskRfCwr..CGrpvGRsekerkgaseGtCpkCgspysFlPqLspGdvvagq 139
                   vpE  RfC++  C r+vGR  +er     G+Cp+Cg p+ F+  L+pGdvvagq
   KIR61510.1  72 TVPEHERFCANpaCRREVGRGGAER--LDHGYCPHCGTPFAFVSALAPGDVVAGQ 124
                  69******************99998..578************************9 PP

>> WaaY  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.7e-07    0.0011     142     189 ..     242     289 ..     183     309 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.7e-07
        WaaY 142 akikqsieklhqlgmvsgdphrgnfivkkdevriidlsgkrasaerka 189
                  +i +++++lh +g++  d h gn i   d v++idl g r + +r++
  KIR61510.1 242 HEILTALDHLHGKGLLYTDLHPGNVIRTADRVKLIDLGGVRRADDRHS 289
                 578899*********************************999988865 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.9       1.7   3.8e+03      23      52 ..     472     501 ..     460     515 .. 0.54
   2 !    9.0   0.2   0.00088         2       1      39 [.     522     560 ..     522     561 .. 0.91
   3 !   19.0   0.8   6.6e-07    0.0015       3      63 ..     558     620 ..     556     624 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.7
      TPR_19  23 knaearllLAeallalgqldeAealLdalp 52 
                  + e++l  ++a+l+l     Ae++L+ + 
  KIR61510.1 472 ASVEVQLSRCRAHLELAGAGPAEEALAVAA 501
                 556666666666666655555555555443 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00088
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalg 39 
                 +la+   aeA +++ +a++e p+  + +l+L  +  + g
  KIR61510.1 522 ALARSAVAEATERFDRAYAELPGEVAPKLALGYCAEQRG 560
                 5788899*************************9998887 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 6.6e-07
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd.d.aryas 63 
                 ++gd  eA +++++++  d   a a+ +LA++ la g+ ++A + Ld +p+  +  d a++a+
  KIR61510.1 558 QRGDAGEATRYYRAVWRRDRSAASAAFGLARLRLADGDRAAAVRFLDGVPRVSRHyDaAQVAA 620
                 68************************************************9888865566665 PP

>> zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.5      0.56   1.3e+03      20      30 ..      76      88 ..      75      89 .. 0.70
   2 ?   11.5   0.5   8.3e-05      0.19       2      14 ..      98     110 ..      97     114 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.56
  zf-NADH-PPase 20 warvC..paCgle 30
                   + r C  paC++e
     KIR61510.1 76 HERFCanPACRRE 88
                   6666777999887 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 8.3e-05
  zf-NADH-PPase   2 thrFCgrCGapte 14 
                    +h +C++CG+p +
     KIR61510.1  98 DHGYCPHCGTPFA 110
                    6*********965 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2     0.086   1.9e+02      13      20 ..      16      23 ..      12      23 .. 0.78
   2 ?   -0.1   0.0      0.39   8.7e+02       8      18 ..      72      82 ..      70      82 .. 0.82
   3 ?    6.6   2.9    0.0029       6.6      15      22 ..     101     108 ..     100     109 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.086
  zinc_ribbon_2 13 akFCpyCG 20
                   + FC+ CG
     KIR61510.1 16 DGFCEVCG 23
                   56999999 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.39
  zinc_ribbon_2  8 elqdnakFCpy 18
                   ++++ ++FC +
     KIR61510.1 72 TVPEHERFCAN 82
                   68999****86 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0029
  zinc_ribbon_2  15 FCpyCGtp 22 
                    +Cp+CGtp
     KIR61510.1 101 YCPHCGTP 108
                    68888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 4716.62
//
Query:       KIR61511.1  [L=543]
Description: hypothetical protein TK50_28335 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-13   51.2   0.9    6.5e-13   49.8   0.9    1.8  1  Trypsin_2  Trypsin-like peptidase domain
     0.0016   18.3   0.0     0.0049   16.7   0.0    1.8  1  Trypsin    Trypsin


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.9   7.2e-17   6.5e-13       1     150 []      13     171 ..      13     171 .. 0.70

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 7.2e-17
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaav...kaikkkveeagadgrevpakvvaadp....................elDlAllkvssderaglpplplg 76 
                 GsG l+g+++ +lT+aHvvd a g a    +          ++  +v++++v+                       + D+All++ sd+  g p ++l+
  KIR61511.1  13 GSGTLLGDRH-VLTCAHVVDRAVGRATagaT----------PPADRVQVELVRLPRlparsagvvaggwvpagregQGDIALLEL-SDPVPGRPGAELR 99 
                 9*********.********999999995552..........4444444443333333444444444545556556566*******.9999999999999 PP

   Trypsin_2  77 psealkggepvyvvGyplggeksgsvssGivsgvvesesaasgegesflqtdaatspGsSGGplfd.sdGrvvGl 150
                   + l +   vy++G+p+   ++++v++    g+ + ++   + ++s       + +G SG++ +d ++G vvG+
  KIR61511.1 100 RLP-LWEK-HVYAFGFPKEFRDGETVHAVLHGGTGP-ANEWMQMDPSPASPGLRVRSGFSGAAAVDnETGYVVGM 171
                 944.4455.8******97777765666666666666.44445555555555666677********9999*****8 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.5e-07    0.0049      27     143 ..      13     127 ..       1     195 [. 0.62

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.5e-07
                 EEEEEEETTEEEEEGGGTTT.GGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTT..............TTTEEEEEESSSSTSBSSBHCCBBC CS
     Trypsin  27 CgGslisenwvlTAaHCvsn.asdvkvvlgehnlkksegkeqklkvekvivhpnynpstl..............dnDiallklkepvklgdtvrpiclp 110
                  +G+l++++ vlT aH+v+          g+ ++  + +   +++ve  +  p+  ++                + Diall+l+ pv   +  +  +lp
  KIR61511.1  13 GSGTLLGDRHVLTCAHVVDRaV-------GRATAGATPP-ADRVQVEL-VRLPRLPARSAgvvaggwvpagregQGDIALLELSDPVPGRPGAELRRLP 102
                 479****************841.......3322222222.23344433.222444333333345555555667899**********9999999999999 PP

                 STTHTTSTTTEEEEEESSBSSTSSBSSBEEEEE CS
     Trypsin 111 aassslpvgttclvsGwgrtkekgksdtlqeve 143
                         ++++++ G+++++++g  +t++ v 
  KIR61511.1 103 L------WEKHVYAFGFPKEFRDG--ETVHAVL 127
                 8......55699999999999999..5554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3949.45
//
Query:       KIR61512.1  [L=254]
Description: hypothetical protein TK50_28360 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-41  142.9   0.0    1.9e-41  142.7   0.0    1.0  1  Thioesterase   Thioesterase domain
    9.9e-09   36.1  21.9    1.3e-08   35.7  21.9    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0013   18.0   0.0     0.0022   17.3   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0021   17.9   0.1     0.0029   17.5   0.1    1.3  1  Abhydrolase_3  alpha/beta hydrolase fold
     0.0063   16.2   0.0     0.0092   15.7   0.0    1.2  1  FSH1           Serine hydrolase (FSH1)
  ------ inclusion threshold ------
      0.067   13.1   0.0        0.1   12.4   0.0    1.3  1  Lipase_3       Lipase (class 3)


Domain annotation for each model (and alignments):
>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.7   0.0   6.4e-45   1.9e-41       2     217 ..      20     234 ..      19     247 .. 0.93

  Alignments for each domain:
  == domain 1  score: 142.7 bits;  conditional E-value: 6.4e-45
                   EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST..SHHHCTTCHHHHHHHHHHHHHHH-..SSSSEEEEEETHHHHHHHHHHHHHHHC.T-S CS
  Thioesterase   2 pLflfppagGsasvfrslasklsdpvvevlavqlpgre..rdepplesieelaaeyaealrqiq..pegPyalfGhSlGgllAfevArqLesq.Gla 93 
                   +L++fp+agG+ ++++ +a++l+d+ vev +v lpgre   de++ ++++ l++e+ +al ++   p  P+a+fGhSlG+llA+e+Ar L++   ++
    KIR61512.1  20 RLYCFPYAGGGLAAYQPWAARLPDS-VEVWTVCLPGREhrLDEAARTDLTGLVDELRAALAPQLagPPAPVAFFGHSLGALLAYELARDLRAHgDRE 115
                   79**********************8.*************99*******************987533788************************669* PP

                   EEEEEEESCCCCCCHHCHHCCCHTTHHTHHHHHCCTTHHHCCTTTHCCHHHHHHHHHHHHHHHHHTCCS-TTSCSEHHCEEEEEEGSS-CTCCCCCC CS
  Thioesterase  94 vkslflidssapseteaqeasrraedeefveeltdlggtepeelledeellsellpalradyraleqyslrpeaaqklratlfngsddklkdldtle 190
                   +++l+l++  a ++   + ++++ +d++fv+  + lgg+ p ++le +el +  lp+lrad +a e+y++rp     +++t  +g+ d+    d   
    KIR61512.1 116 PAALVLSGRAAAHH-PPRRRMHTLDDDAFVAAVRSLGGA-PSAALEHPELRELCLPTLRADITAAETYRHRPGPPLDCAITSWAGDADEGVPPD--A 208
                   ************99.8888888888888**********9.*****************************9999999999**********99999..6 PP

                   CHCHCHCTCESCEEEEEESSHCCHHHS CS
  Thioesterase 191 laerweqktsgevsvhvlegdhfylle 217
                    ae w+++t+g+++++ ++g+hf+  +
    KIR61512.1 209 VAE-WARHTRGPTRHRLFPGGHFFPWS 234
                   888.*******************9875 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7  21.9   4.4e-12   1.3e-08       7     219 ..      29     241 ..      22     242 .. 0.60

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 4.4e-12
                    GC.....GCHHHHHHHHCCTCEEEEE--TTS...TS-GGCS--HHH.CHHH.HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC..EEEEES-.. CS
  Abhydrolase_6   7 agssassWlvapLaallaagvhvlapDlpGh...Grsdpppldled.ladl.aalldelaagggpvvlvGHSlGGalalaaaplalvvgvlldppp 97 
                    +g+   +  + p+aa+l++ v+v+++ lpG      ++ + +dl+  +++l aal+  la+ + pv  +GHSlG++la ++a+ +   +   d  p
     KIR61512.1  29 GGL--AA--YQPWAARLPDSVEVWTVCLPGRehrL-DEAARTDLTGlVDELrAALAPQLAGPPAPVAFFGHSLGALLAYELARDL---RAHGDREP 116
                    443..22..45999999**************4422.4555566666345554555555544778889*************44444...44444444 PP

                    ----TTTS----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHHCCCCHCHCCCGHHHHCCHHC....HTTCCHHTT-TTGCE...EE.C..TT-C.H CS
  Abhydrolase_6  98 talpagllaaalelllallallrllawlsreplprlfladedadaawrarlarlaallaglg....llpaaawadlpvpll...vl.g..geDp.l 182
                     al ++ +aaa+ ++++++  l ++a+++   + r++ + ++     +a   + ++ l+ +       +a+ ++++p p l   +  +  ++D+ +
     KIR61512.1 117 AALVLSGRAAAHHPPRRRMHTLDDDAFVA---AVRSLGGAPS-----AALEHPELRELCLPTlradITAAETYRHRPGPPLdcaITsWagDADEgV 204
                    44444447777777777777777799997...7778888444.....3333333333333331111223667777777773222223423666654 PP

                    HHHCHHCCCH.STTEEETCE...SSS.-HHHHSHHHHHH CS
  Abhydrolase_6 183 vprllerlla.qagarlpvvlpgaGH.lphleepdevae 219
                     p+ ++++++  +g +  + l  +GH +p+ ++p  +a+
     KIR61512.1 205 PPDAVAEWARhTRGPTR-HRLFPGGHfFPW-SAPGVLAA 241
                    44445555555455555.99******5555.59988886 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.2e-07    0.0022      61     116 ..      66     131 ..      55     152 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.2e-07
  Hydrolase_4  61 Dlaafvekvk.eehpel.....plfllGhSmGGliallyl....lrypdkvaglilsaPalkikak 116
                  Dl  +v++++ +  p+l     p+  +GhS+G+l+a +++    ++  ++ a+l+ls+ a + +++
   KIR61512.1  66 DLTGLVDELRaALAPQLagppaPVAFFGHSLGALLAYELArdlrAHGDREPAALVLSGRAAAHHPP 131
                  5555555555333333355555******************876333333788*****999887765 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   9.5e-07    0.0029      51     108 ..      66     124 ..      27     177 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 9.5e-07
                    HHHHHHHHHHHTHH.HHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE CS
  Abhydrolase_3  51 dalaalrwlaeqaw.elgadpsrivlaGdSaGGnlaaavalrardegepkvagqvliyP 108
                    d    +  l++  + +l+  p+ ++++G S G+ la+ +a+ +r++g  ++a++vl   
     KIR61512.1  66 DLTGLVDELRAALApQLAGPPAPVAFFGHSLGALLAYELARDLRAHGDREPAALVLSGR 124
                    44444444544445589999**************************9999999998544 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.1e-06    0.0092     105     207 ..      90     236 ..      61     240 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.1e-06
        FSH1 105 GiiGFSqGaalaallaslleellkeashpslkfailvsGfkleepk..............................................yeeyy.. 155
                    G S Ga+la  la +l+ +    ++p    a+++sG ++ ++                                                +e+y  
  KIR61512.1  90 AFFGHSLGALLAYELARDLRAHGD--REP---AALVLSGRAAAHHPprrrmhtldddafvaavrslggapsaalehpelrelclptlraditAAETYrh 183
                 5689999*****999999999887..445...6777788777665567788888888888888888888888888888888888888888885556656 PP

        FSH1 156 .eedkiqtptLhvlGelDtvvdeerseaLaeafknsskvlkHpggHfvPnkke 207
                    +++ + +    G++D+ v+++   + a++++  ++   +pggHf+P +++
  KIR61512.1 184 rPGPPLDCAITSWAGDADEGVPPDAVAEWARHTRGPTRHRLFPGGHFFPWSAP 236
                 678899*****************************999999********8875 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.5e-05       0.1      64      93 ..      86     115 ..      34     127 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.5e-05
                 -EEEEEEEETHHHHHHHHHHHHHHHTT-SS CS
    Lipase_3  64 eysivvtGHSLGgalAlLaaldlvengene 93 
                  + +++ GHSLG+ lA  +a dl+++g +e
  KIR61512.1  86 PAPVAFFGHSLGALLAYELARDLRAHGDRE 115
                 3779999*****************999774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1763.92
//
Query:       KIR61513.1  [L=297]
Description: hypothetical protein TK50_28365 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.4e-23   82.0  20.8    1.5e-22   81.3  20.8    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
    7.6e-18   65.1   0.0    1.4e-15   57.6   0.1    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
    7.5e-14   51.6   0.0    1.2e-13   50.9   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
    4.2e-05   23.8   0.0    6.5e-05   23.2   0.0    1.2  1  Thioesterase   Thioesterase domain
  ------ inclusion threshold ------
      0.032   14.3   0.0      0.069   13.3   0.0    1.5  1  Abhydrolase_4  TAP-like protein
      0.081   12.8   0.1       0.21   11.4   0.0    1.7  1  Ser_hydrolase  Serine hydrolase


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3  20.8   4.9e-26   1.5e-22       1     214 [.      24     256 ..      24     261 .. 0.64

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 4.9e-26
                    EEEE--GC.....GC.HHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHH....HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC..... CS
  Abhydrolase_6   1 vlllHGagssassWl.vapLaallaagvhvlapDlpGhGrsdpppldledladl....aalldelaagggpvvlvGHSlGGalalaaapla..... 86 
                    +++lHG +   +sW+ +a  a++ +a+ +v+++Dl+GhG+sd+p ++++  +d+    + +l+++   g++v l+GHSlG+a+al++a+++     
     KIR61513.1  24 LVVLHGIW---ESWRtFADCARRWSADRTVYCLDLRGHGDSDRPSTGYRF-VDYaadvRVALAAI---GPEVDLLGHSLGAAVALHVAAGTtgggd 112
                    799*****...8896355558888999888******************99.66641114455555...9*****************6666699*99 PP

                    .......EE.EEES-..----TTT......S----TTHHHHHH......TT-C.....CCCHCCHS-HSCCCCHHH...CCCCHCHCCCGHHHHCC CS
  Abhydrolase_6  87 .....lvvg.vlldppptalpagl......laaalelllalla......llrl.....lawlsreplprlfladed...adaawrarlarlaalla 156
                         ++++ v+++pp+  lp ++      +a+ ++l++++l+      +  +     ++w++       ++a+     ad  +ra++++ +   a
     KIR61513.1 113 agrpaRIRRlVAVEPPV-LLPGDWppvradMARSWRLARRPLDeivaalP--AtatrtPGWRR-------MIAESLagtADGVFRAMVDAEQGEVA 198
                    9999876778*****66.33333323333322222222222223332220..12233455553.......33333322225777777777777777 PP

                    HHCHTTCCHHTT-TTGCEEECTT-C......HHHHCHHCCCH.STTEEETCE...SSS-HHHHSH CS
  Abhydrolase_6 157 glgllpaaawadlpvpllvlggeDp......lvprllerlla.qagarlpvvlpgaGHlphleep 214
                    ++g      ++++ +p+l + ++Dp      l  + +++++a +++ar+  vlpgaGH++ +++p
     KIR61513.1 199 WVG-----LLRRIATPTLAV-AGDPdvagtlLAGDRMAAFGAgLPSARV-AVLPGAGHHVEIDRP 256
                    777.....666666666544.5555344443111224444447799999.**********99888 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.1   4.8e-19   1.4e-15       1     116 [.      22     135 ..      22     188 .. 0.85
   2 !    6.1   0.0    0.0026       7.7     206     256 ..     199     255 ..     139     256 .. 0.79

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 4.8e-19
                    SEEEEE-STTTCGGGGTTGHHHHHHHHT...TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakd...gfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaae 93 
                    p+lv+lhG+ +s+        + ++a++   + +v++lDlrG+g S++++    + y+++++a+d++ +l+a g + + l+GhS+G ++al++aa 
     KIR61513.1  22 PPLVVLHGIWESWRT------FADCARRwsaDRTVYCLDLRGHGDSDRPS----TGYRFVDYAADVRVALAAIGPE-VDLLGHSLGAAVALHVAAG 106
                    79******9996554......5567777888*******************....68******************86.77****************9 PP

                    H........GGGEEEEEEESE.....CSSCCHHHHH CS
  Abhydrolase_1  94 y........perVkalvllga.....idpaasliea 116
                             p r+++lv++++             ++
     KIR61513.1 107 TtgggdagrPARIRRLVAVEPpvllpG-------DW 135
                    9********************543331.......22 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0026
                    C...THHHHSEEEEEEETTCSSSCHHHHHHHHHC...HTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 206 e...lknvlaptlvisgtsDplvppkaledlaql...lpkkrlvvisdagHlafleg 256
                    +   l+ +  ptl ++g+ D + +  a++++a+    lp++r+ v+++agH + +++
     KIR61513.1 199 WvglLRRIATPTLAVAGDPDVAGTLLAGDRMAAFgagLPSARVAVLPGAGHHVEIDR 255
                    1444556777**********************99*****************987765 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   3.9e-17   1.2e-13       3     235 ..      20     252 ..      18     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 3.9e-17
  Hydrolase_4   3 pkavvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse.gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyl..... 94 
                  ++  +v++HG+ e+ + +a+ a+++ a +  vy+lD rGhG s+ + +g   +f dy +D++ ++ ++       ++ llGhS+G+++al+++     
   KIR61513.1  20 HRPPLVVLHGIWESWRTFADCARRWSA-DRTVYCLDLRGHGDSDrPSTG--YRFVDYAADVRVALAAIG-----PEVDLLGHSLGAAVALHVAagttg 109
                  67779********************86.799************855555..89***********98877.....55679**************88888 PP

  Hydrolase_4  95 ...lrypdkvaglilsaPalkikaklk.appllklllkllgkllpklqvsnnlkadslsrdpevvaayeadplv.hgkitvrlllelldamkrleera 187
                     + +p+++++l+ + P + ++ +++ +++ ++   +l+ + l ++      +++  +r p  ++ + a++l  + +   r ++++ ++  + +   
   KIR61513.1 110 ggdAGRPARIRRLVAVEPPVLLPGDWPpVRADMARSWRLARRPLDEIVA---ALPATATRTPGWRR-MIAESLAgTADGVFRAMVDAEQGEVAWVGLL 203
                  887778889***********99999875555555544444444444444...78888888888777.5555555588888888888888888888899 PP

  Hydrolase_4 188 akitlPllllhGeaDkvvdpeas.relyerlgskdktlklypglyHell 235
                   +i +P+l + G+ D      a  r ++  +g    ++++ pg+ H + 
   KIR61513.1 204 RRIATPTLAVAGDPDVAGTLLAGdRMAAFGAGLPSARVAVLPGAGHHVE 252
                  9999***********9998887743344456666899999999999875 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.2e-08   6.5e-05       2      85 ..      23     105 ..      22     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.2e-08
                   EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTSTSHHHCTTCHHHHHHHHHHHHHHH-SSS.SEEEEEETHHHHHHHHHHH CS
  Thioesterase   2 pLflfppagGsasvfrslasklsdpvvevlavqlpgrerdepplesieelaaeyaealrqiqpeg.PyalfGhSlGgllAfevAr 85 
                   pL++++++  s + f+  a++ s++   v+++ l+g++ d+  +++    +++ a+   +    g  ++l GhSlG+++A  vA+
    KIR61513.1  23 PLVVLHGIWESWRTFADCARRWSAD-RTVYCLDLRGHG-DSDRPSTGYRFVDYAADVRVALAAIGpEVDLLGHSLGAAVALHVAA 105
                   899*********************8.***********7.7777777788888888865555555533***************996 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.3e-05     0.069      34      94 ..     207     270 ..     191     276 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.3e-05
  Abhydrolase_4  34 aapvLllqnerDpaTPyegakkla...kalggavlvtvegeGHgalaagntCvdkavdaYLltG 94 
                    a+p+L +++  D a  +  + ++a     l++a++ +  g+GH++ ++  +C + +v+++L  G
     KIR61513.1 207 ATPTLAVAGDPDVAGTLLAGDRMAafgAGLPSARVAVLPGAGHHVEIDRPACFHALVEEFLSVG 270
                    578899999999887777777776233578889************99**************987 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     7e-05      0.21      41      74 ..      72     105 ..      42     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7e-05
                    HHHHHHHHHHHC-STTEEEEEETCHHHHHHHHHH CS
  Ser_hydrolase  41 dWvaaleaaveaaeekvvlvAHSlgclavlhaae 74 
                    d +a ++ a++a+  +v l+ HSlg++++lh+a+
     KIR61513.1  72 DYAADVRVALAAIGPEVDLLGHSLGAAVALHVAA 105
                    77899999************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.31s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1921.33
//
Query:       KIR61514.1  [L=104]
Description: hypothetical protein TK50_28370 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 720.50
//
Query:       KIR61515.1  [L=298]
Description: hypothetical protein TK50_28380 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-38  132.0   0.2    4.7e-33  114.8   0.1    2.0  2  Glyoxalase_3  Glyoxalase-like domain
    5.8e-12   45.8   0.0    3.2e-06   27.4   0.0    3.1  3  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
  ------ inclusion threshold ------
      0.048   13.8   0.0        1.4    9.1   0.0    2.9  2  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge


Domain annotation for each model (and alignments):
>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   0.1   7.9e-37   4.7e-33       2     175 ..       7     188 ..       6     189 .. 0.86
   2 !   15.8   0.0   1.9e-06     0.012      33     117 ..     193     282 ..     187     296 .. 0.75

  Alignments for each domain:
  == domain 1  score: 114.8 bits;  conditional E-value: 7.9e-37
  Glyoxalase_3   2 DHvvlavpdleeaaarfarrlGftvtpggehpglgtaNalvmfgdgYlEllavdpeapaperprlfgld.rlakgeglhtlalrtddidataarlra 97 
                   DHv+lavpdl++a+a f++       pg++hpg+gt Na+++f+d+YlEl++v ++a+a++rp++ ++    ++g+g++  +l+ +d+ at a+l++
    KIR61515.1   7 DHVMLAVPDLDAARAAFTACFDRPSRPGSRHPGWGTTNAVLRFADSYLELITVVDRAEAAGRPASRRMTgVSDAGGGWVSAVLAAEDLPATCAALAD 103
                   ********************999*****************************87777776666544444223479********************** PP

  Glyoxalase_3  98 aGvd....eagrrvrpdggdlrwrllfladealpaegalPfliqwgasdpa....lad.hpngalglaelviavsdpeataerlael 175
                   +Gv      +g  vrpdg++ rwr+ +  +e    +g+lP li++ +++p      a+    g++g+a+++iav+d +a+a+ +a l
    KIR61515.1 104 RGVPvsppLDGVSVRPDGRRRRWRVGAHGEE-F-RSGRLPSLIEYLDPWPGadpdPAElRHGGVHGVAGVDIAVTDLPAAAAEYAVL 188
                   ******9999999***********9999986.3.48********999977555553332334699****************999865 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.9e-06
  Glyoxalase_3  33 pglgtaNalvmfgdg.YlEllavdpeapaperprlfgldrlakgeglhtlalrtddidataarlraaGvd....eagrrvrpdggdlrwr 117
                   p lg + a + ++dg  l lla+  +a +++++ +++++    g+gl+++al++d+ +a+aa+++ +Gv+     +g++v  + g + +r
    KIR61515.1 193 PALGDRSATWTLPDGrVLRLLAPVGSAGPAGAGDPVAAHLDRLGPGLCAVALAVDSPAAVAAAVAGRGVAvrpgIDGEPVVDPAGCAPIR 282
                   44577778888877668899997777776777777766533359************************9998888888884444444444 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   5.3e-10   3.2e-06       1      94 [.       7     109 ..       7     125 .. 0.78
   2 ?    2.9   0.0     0.021   1.3e+02      48      86 ..     142     185 ..     112     186 .. 0.64
   3 !   14.4   0.0   5.7e-06     0.034       3      93 ..     171     263 ..     169     272 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 5.3e-10
                   EEEEEE-S-HHHHHHHHHH.TT-EESS-.-E.EETTTTEEEEEEEETTEEEEEEEESSTT....-THHH.......TS-EEEEEEEEES-HHHHHHH CS
  Glyoxalase_4   1 dQigivVeDleaavarfsallGvgpwqr.yrdepqevdlafallgsgsvqieLieplegp....eflae.......hgeglhhlaywvddldaavar 85 
                   d++ ++V+Dl+aa a+f+a ++  p+++  r + ++ ++a+++  ++  ++eLi  ++ +     +  +        g+g     ++ +dl a++a+
    KIR61515.1   7 DHVMLAVPDLDAARAAFTACFDR-PSRPgSRHPGWGTTNAVLRFADS--YLELITVVDRAeaagRPASRrmtgvsdAGGGWVSAVLAAEDLPATCAA 100
                   69********************5.555515678889*********95..9*****9998844553333345555546666666666679******** PP

                   HCTTTEEEE CS
  Glyoxalase_4  86 leeqGfevv 94 
                   l+++G++v 
    KIR61515.1 101 LADRGVPVS 109
                   ******996 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.021
                   EEEEEEEESSTT..-THHHTS-EEEEEE...EEES-HHHHHHHH CS
  Glyoxalase_4  48 vqieLieplegp..eflaehgeglhhla...ywvddldaavarl 86 
                     ie   p++g+  ++ + +++g+h +a   ++v+dl aa a++
    KIR61515.1 142 SLIEYLDPWPGAdpDPAELRHGGVHGVAgvdIAVTDLPAAAAEY 185
                   56777788886654666668888988874445588888888776 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 5.7e-06
                   EEEE-S-HHHHHHHHHH.TT-EES.....S--E.EETTTTEEEEEEEETTEEEEEEEESSTT-THHHTS-EEEEEEEEES-HHHHHHHHCTTTEEE CS
  Glyoxalase_4   3 igivVeDleaavarfsallGvgpw.....qryrdepqevdlafallgsgsvqieLieplegpeflaehgeglhhlaywvddldaavarleeqGfev 93 
                   + i+V+Dl aa+a+++ llG  p       +++ ++ +v   +a +gs+ +     + ++ + +l++ g+gl  +a++vd+  a+ a+++ +G++v
    KIR61515.1 171 VDIAVTDLPAAAAEYAVLLGGPPAlgdrsATWTLPDGRVLRLLAPVGSAGP---AGAGDPVAAHLDRLGPGLCAVALAVDSPAAVAAAVAGRGVAV 263
                   5699****************6544222225555566666666666666433...3455555599999**************************998 PP

>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00024       1.4       1     106 [.       5     113 ..       5     115 .. 0.73
   2 ?    0.2   0.0      0.13   7.9e+02       6      27 ..     172     193 ..     153     271 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00024
                 EEEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEEST...EEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSC......TSEEEEEEEEEHCHHHHH CS
  Glyoxalase   1 gidhvallvgdleksldFYtkvLGfklvkktdnteet...eglriaffhaggghielvlneapsgaakhvkkiee......tvhhvafialdvedvgka 90 
                 g+dhv+l+v+dl+++ + +t +++      +   +++   + +  +f +++   i++v++  + g++++             + +    +l+ ed+ ++
  KIR61515.1   5 GVDHVMLAVPDLDAARAAFTACFDRPSRPGSR--HPGwgtTNAVLRFADSYLELITVVDRAEAAGRPASR----RmtgvsdAGGGWVSAVLAAEDLPAT 97 
                 68999999999999999999999887777777..444123555555555555566666655555555555....2445667889999999999999999 PP

                 HHHHHHTTGEEEEEEE CS
  Glyoxalase  91 ldrlkeagvkvvaepg 106
                 +  l+++gv+v+++++
  KIR61515.1  98 CAALADRGVPVSPPLD 113
                 9999999999999875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.13
                 EEEESHHHHHHHHHHHHHTSEE CS
  Glyoxalase   6 allvgdleksldFYtkvLGfkl 27 
                  ++v+dl ++++ Y+  LG   
  KIR61515.1 172 DIAVTDLPAAAAEYAVLLGGPP 193
                 4666666666666666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1900.45
//
Query:       KIR61516.1  [L=323]
Description: hypothetical protein TK50_28405 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-18   66.8   3.4    1.2e-18   66.8   3.4    2.0  2  HTH_1           Bacterial regulatory helix-turn-helix protein
    2.2e-13   50.0  12.9    4.1e-13   49.2  12.9    1.5  1  LysR_substrate  LysR substrate binding domain
    0.00014   21.6   0.2    0.00047   19.9   0.2    2.0  1  HTH_30          PucR C-terminal helix-turn-helix domain
     0.0026   17.6   2.1     0.0062   16.3   0.2    2.6  2  HTH_AsnC-type   AsnC-type helix-turn-helix domain
      0.007   16.2   0.5      0.035   14.0   0.1    2.4  2  MarR_2          MarR family
      0.007   15.9   0.7      0.015   14.8   0.1    1.9  2  HTH_24          Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
        0.1   12.7   0.6       0.26   11.4   0.6    1.6  1  TmoB            Toluene-4-monooxygenase system protein B (Tmo


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   3.4   4.5e-22   1.2e-18       2      60 .]       6      64 ..       5      64 .. 0.97
   2 ?   -2.0   0.0       1.4   3.6e+03       3      10 ..     160     167 ..     144     172 .. 0.59

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 4.5e-22
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                 ++r+fv  aee +f rA e+Lglsq a+s++i+rLEe+l+ pLfeR++r   LTeaG+
  KIR61516.1  6 ALVRAFVVTAEELHFGRAGERLGLSQQALSKRIQRLEELLDRPLFERSTRTSALTEAGR 64
                578*******************************************************7 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
                 HHHHHHHH CS
       HTH_1   3 qlrlfvav 10 
                 +l+ +vav
  KIR61516.1 160 RLEPLVAV 167
                 34444555 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2  12.9   1.6e-16   4.1e-13      23     206 ..     104     290 ..      71     293 .. 0.87

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 1.6e-16
                     HHHHHHHHHSTTEEEEEEEESH.HHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGGGCTSEEEEESTTST CS
  LysR_substrate  23 pllarfraryPevelelvegds.eelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLargepvsledLadeplilleegsg 114
                     +l+a+ +a +P+++le+++    +  l +l++ e+D+++ +     + + +  r +  eplv+v+ ++hpLa++  v+++dL d+   + ++gs+
      KIR61516.1 104 RLVAAVLAGNPRLRLEISARRGlSLALPALRRAEIDAVFGRVAGaaAATAVAHRLIRLEPLVAVVDAGHPLAGRSTVRPADLVDHGVWVPSPGSA 198
                     688999999**********999788899***********999999899999999999************************************** PP

                     .HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCC.HTTTEEEEEESSTTCEEEEEEEEETTCCCHHHHHHHHHHHHH CS
  LysR_substrate 115 .lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdel.adgrlvalplpepplprelylvyrkgrelspavrafidflre 206
                        +     l + ++ +  ++e  +   + +l + G  ++ +  sa++ +  ++++lv+lpl ep++  +++l++r+++ ++p + +f+d+l++
      KIR61516.1 199 vE-WGTYLQLFADRFGIPLTFEQVDNVGADELLRRGRALGRVFLSAADVANpQADDLVTLPLVEPRPVYPWSLLWRRND-RRPVLHDFVDLLHD 290
                     54.44444444445555555677788888999999988888877777644349999********7777***********.***********986 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.2   1.8e-07   0.00047      15      52 ..      20      57 ..       5      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.8e-07
                HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHHHH CS
      HTH_30 15 isatAkaLhvHrnTlryRLrrieellgldlddpddrla 52
                  ++ ++L+++ + l++R++r+eell+++l + ++r++
  KIR61516.1 20 FGRAGERLGLSQQALSKRIQRLEELLDRPLFERSTRTS 57
                56899*************************99988875 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   2.4e-06    0.0062      22      42 .]      22      42 ..       2      42 .. 0.82
   2 ?   -0.7   0.1      0.52   1.3e+03      31      42 .]     151     162 ..     149     162 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.4e-06
  HTH_AsnC-type 22 eLAervGlSestvlrRvrrLe 42
                   + +er+GlS+++  +R++rLe
     KIR61516.1 22 RAGERLGLSQQALSKRIQRLE 42
                   569*****************8 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.52
  HTH_AsnC-type  31 estvlrRvrrLe 42 
                    +++v+ R+ rLe
     KIR61516.1 151 ATAVAHRLIRLE 162
                    79*******998 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.4e-05     0.035      17      47 ..      15      43 ..       8      44 .. 0.85
   2 ?   -2.9   0.0       2.5   6.4e+03      43      55 ..     151     163 ..     148     164 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.4e-05
                TTTSEEEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 17 rpgrdltvgelarrlglsksavsrilkrLva 47
                +++  l  g   +rlgls++a+s++++rL++
  KIR61516.1 15 AEE--LHFGRAGERLGLSQQALSKRIQRLEE 43
                455..7889999*****************97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.5
                 HHHHHTTSEEEEE CS
      MarR_2  43 krLvaaGLverrp 55 
                 + +va+ L++ +p
  KIR61516.1 151 ATAVAHRLIRLEP 163
                 5678888888775 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   5.9e-06     0.015      25      43 ..      25      43 ..      23      44 .. 0.95
   2 ?   -2.5   0.1       1.6     4e+03      22      31 ..     119     128 ..     117     129 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.9e-06
      HTH_24 25 erlglSpstvnrrlkrLee 43
                erlglS++++++r++rLee
  KIR61516.1 25 ERLGLSQQALSKRIQRLEE 43
                8*****************8 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.6
      HTH_24  22 eLAerlglSp 31 
                 e++ r glS+
  KIR61516.1 119 EISARRGLSL 128
                 999999*997 PP

>> TmoB  Toluene-4-monooxygenase system protein B (TmoB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6    0.0001      0.26      27      69 ..     144     185 ..     136     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
        TmoB  27 qVaekvahhavGrrvrpkpgaplrVrrqGevlprsmtvaeagl 69 
                  Va ++a++av  r+   +   + V++ G++l+++ tv+ a+l
  KIR61516.1 144 RVAGAAAATAVAHRLIRLE-PLVAVVDAGHPLAGRSTVRPADL 185
                 79************99777.69****************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2252.96
//
Query:       KIR61517.1  [L=473]
Description: coenzyme F390 synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-05   23.6   0.0    8.7e-05   21.3   0.0    1.9  2  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   4.9e-09   8.7e-05     156     369 ..      91     303 ..      23     306 .. 0.65
   2 ?   -0.4   0.0     0.018   3.2e+02     396     421 ..     316     349 ..     311     351 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.9e-09
                  -BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH......HHHCSCCTT.T-EEEESS-TTSCHHHHHHHH..HHHHTT-EEE.E-TTCGCCHHH CS
  AMP-binding 156 lkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk......letrfklke.ddvvlsilplahifglilell..lallsGatvv.llpkdaaldpk 243
                   +p d ++   T GTTG    +    + ++++   ++      ++++f+    + vv   +  +  +++  +++  +a   Ga+ v ++p++++   +
   KIR61517.1  91 GTPADALIYYETTGTTGASTPCPRDAKDVMSSNVHVEwawrrlFDHYFD--GrRPVV-GLMGPSELYAF-GDTFgdVAQRLGACHVkIWPESPRVGFR 184
                  5566644444488888888888888866655555544442332333322..213333.33333333332.3333013334455555145545444455 PP

                  HHHHHHHHHT-SEEEEEHHHHHHHHHCCCHH.CHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC.EEEEEEEEGGGSSECEECHCTTTCTSTTS- CS
  AMP-binding 244 lllelieklkvtviagvPrvleallesgalk.aakkakdlsslrlvllggeplspellrffralfge.evlegYGlTEttgvvtvlpleedkkklgsv 339
                    l+li++l+v v++++P+++  l+++  l+     a+dl+ ++l+ + ge + p+    +r++ g      +YG  E+ ++ t ++   d  +l   
   KIR61517.1 185 KALRLIRELNVEVLVAAPALCLNLAKAA-LQnGLDPARDLP-VKLFTVLGEICTPAFGANVRSIWGAdVRPALYGSQEAMAIGTGCH--LD--RLH-- 274
                  567*********************8853.332355566877.8888899******************533478**********8333..33..222.. PP

                  BEE-TTEEEEEE-TTTSCBEETTSEEEEEE CS
  AMP-binding 340 GkplpgvevkivDeetgepvpdgeeGellv 369
                      p+  v+++D++ +  ++   +Gel++
   KIR61517.1 275 -ISGPNYLVEVLDPDSEASLGAYGTGELCL 303
                  .334799*************9999****96 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.018
                  EEEEEEEEEETT..S......EEEEEEECCCEEE CS
  AMP-binding 396 lrTGDlgrlded..G......yleivgRkkdlik 421
                  +rTGDl+++ ++  G       +e++gR  d + 
   KIR61517.1 316 YRTGDLVTVAPNscGcggpgdVVEVLGRVADRVA 349
                  9*******98762336667667888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3542.77
//
Query:       KIR61518.1  [L=484]
Description: aminodeoxychorismate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-90  301.4   0.0      8e-90  300.9   0.0    1.2  1  Chorismate_bind  chorismate binding enzyme
    1.3e-11   44.8   0.0    7.2e-11   42.5   0.0    2.1  2  Anth_synt_I_N    Anthranilate synthase component I, N termina


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.9   0.0   8.9e-94     8e-90       2     258 .]     217     470 ..     216     470 .. 0.99

  Alignments for each domain:
  == domain 1  score: 300.9 bits;  conditional E-value: 8.9e-94
                      HCHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETTSEEEEECEEEEEEHS CS
  Chorismate_bind   2 redYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleledsellgaSPElllkveggrrietepiaGTrarg 95 
                      ++dY++av+++  +i+agd+y+v + ++l+++  ++ dp+++y++lr+rnp+py++l  l +++++gaSPEl+++ve+g +++++piaGT+ar+
       KIR61518.1 217 EDDYRRAVDRCLGHIAAGDIYQVQIGHELTIR--SDADPVRVYERLRRRNPSPYMYLAPLAGQTVIGASPELFVRVEDG-TATMRPIAGTAART 307
                      689*****************************..999***********************99***************66.************** PP

                      SSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEESHHH CS
  Chorismate_bind  96 ktpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPkkr 189
                       +p+ d+++ ++l++d+Ke+aEh m+vdl rnd+g++++p++++vpe   verys+vlhlvst++g +++++++ d+l+alfP g++tGaPk r
       KIR61518.1 308 GDPARDREAGRRLAADPKEIAEHIMLVDLCRNDIGRICRPDTLDVPETLVVERYSHVLHLVSTVTGAVSTELDSYDVLAALFPSGTMTGAPKIR 401
                      ********************************************************************************************** PP

                      HHHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 190 ameiidelEearRgvYaGavgyldadgeaelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                      ameii+  E++rRg+YaGa+g++++ g ++la+ IRt++++ ++++ +a aG+vadS pe+E++EtlaK
       KIR61518.1 402 AMEIIESTEASRRGLYAGAIGLIGVGGYVNLALCIRTVLHDGQSYHTRASAGVVADSRPEREWRETLAK 470
                      *******************************************************************99 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0     8e-15   7.2e-11       5     136 ..      26     163 ..      23     169 .. 0.78
   2 ?   -1.1   0.0      0.23   2.1e+03       3      17 ..     251     266 ..     249     312 .. 0.61

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 8e-15
  Anth_synt_I_N   5 plsvylklaeee...hkflLeSaeneggegrySfigldpflelkskngeveveg......pegeeleeeepldalrellerfrsaedseptelpfv 91 
                    p ++ l+l+ +    + +lLeS  +  g+ r  ++g+ + l++++ +++v+v+g      +   ++++   +d l+e+l+ +++  d+ ++   f+
     KIR61518.1  26 PFAAHLALRRRFgadQVYLLESPAGPAGDTRHAYVGFGELLSVAVTGRAVTVTGrpaladA---ARARAAGVDGLEEVLRVVQELFDAPAGPGDFS 118
                    66666666666666789*******99999*************************8764321...33333366666666666666665555555688 PP

  Anth_synt_I_N  92 gGlvGylgYDlvreieklpksakddlnlpdarlilydtlivfDhk 136
                     G++ +lgYD+ r++e+lp   +  + lp a+l+l + l+ fD  
     KIR61518.1 119 FGFLAFLGYDAARHFERLPYLIEGGPRLPHACLVLHRGLVRFDLT 163
                    8******************77777777****************76 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.23
  Anth_synt_I_N   3 ltplsvylklaeee.h 17 
                    ++p+ vy++l+ ++  
     KIR61518.1 251 ADPVRVYERLRRRNpS 266
                    6788888888886652 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3587.15
//
Query:       KIR61519.1  [L=196]
Description: hypothetical protein TK50_28425 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.1e-47  159.5   0.0      9e-47  159.3   0.0    1.0  1  GATase         Glutamine amidotransferase class-I
    4.5e-08   33.1   0.0    1.2e-07   31.7   0.0    1.6  1  Peptidase_C26  Peptidase C26


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.3   0.0     1e-50     9e-47       2     187 ..       5     187 ..       4     190 .. 0.97

  Alignments for each domain:
  == domain 1  score: 159.3 bits;  conditional E-value: 1e-50
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspgvegkieaikearenkiPiLGICLGmQllaiefgrkvvkekekeh 100
                 l+D+yds+++ + ++l+++g++ evv+ da         +++d++l+ +Gpg+p+  g++e+++ +++ ++Pi+G+CLG+Q+++++fg+ v +++   +
  KIR61519.1   5 LVDAYDSFVHIIRQYLLSAGMEAEVVRSDAIGVADV-PGTGADALLLGPGPGHPAESGHVELVEAYAG-RLPIFGVCLGHQAIGLAFGARVLRAR-HLM 100
                 89***************************9888875.589****************************.**************************.9** PP

                 EEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHH CS
      GATase 101 hggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnfl 187
                 hg+t+++++d+++++ gl+++++++++H++ v+ ++l  ++l+ ta+ +dd+ +m++++++ p+ +vQFHPEs+ t++g ++l nfl
  KIR61519.1 101 HGKTSEIRHDGRGVFAGLPRPLTATRYHSLIVDGASLAGTDLVPTAHAADDGYVMALRHRRLPVESVQFHPESVRTQHGLAMLTNFL 187
                 **********************************9**************************************************97 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.3e-11   1.2e-07     100     216 .]      67     172 ..      60     172 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.3e-11
  Peptidase_C26 100 aalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaike...laeelrveAvae 192
                    +a++ ++Pi+g+C+G+q +  a+G ++ ++ +         +h    ++ +++ +  +++a l        + +H+  ++     +++l  +A+a+
     KIR61519.1  67 EAYAGRLPIFGVCLGHQAIGLAFGARVLRARH--------LMH---GKTSEIRHDGRGVFAGLPR--PLTATRYHSLIVDGaslAGTDLVPTAHAA 149
                    678889******************88876655........333...34568899999******98..55555666666665444899********9 PP

  Peptidase_C26 193 .DgviEaieseeakafvlgvQwHPE 216
                     Dg + a+++++   +v +vQ+HPE
     KIR61519.1 150 dDGYVMALRHRR--LPVESVQFHPE 172
                    99******9999..57********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1396.53
//
Query:       KIR61520.1  [L=372]
Description: hypothetical protein TK50_28430 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-14   53.2   0.0    2.9e-14   52.5   0.0    1.3  1  AMP-binding  AMP-binding enzyme
    6.6e-11   41.5   0.0    1.8e-10   40.1   0.0    1.7  1  MbtH         MbtH-like protein


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   3.2e-18   2.9e-14       3      79 ..      95     169 ..      93     184 .. 0.93

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 3.2e-18
                  HHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEET CS
  AMP-binding   3 eqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnp 79 
                  + aa tpd++a+v   eg++ ++r+ld+r+  lA+ L ++Gv++gd+V++ll+ +++ vv  la+lk Ga++ pl +
   KIR61520.1  95 TVAAATPDAPAVVH--EGHRTSFRDLDRRSGDLARLLAEHGVRPGDTVGLLLRGGVDAVVGRLAALKSGAAYLPLPS 169
                  67899*******99..9*********************99**********************************976 PP

>> MbtH  MbtH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0     2e-14   1.8e-10      13      51 ..       7      45 ..       4      47 .. 0.95

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 2e-14
                EEEEETT--EEEEETTS---TTEEEEEEEEEHHHHHHHH CS
        MbtH 13 lVLvNdeeqySlWPafaavPaGWrvvggpgsreeClayi 51
                +V+vN  + y lWP++ + PaGW ++++ gsr  Cla i
  KIR61520.1  7 RVVVNRAGRYALWPHAHPTPAGWADTHFIGSRLRCLAQI 45
                6***********************************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      147  (0.00819901); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 3081.23
//
Query:       KIR61521.1  [L=220]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-23   83.0   0.0    2.4e-23   82.4   0.0    1.3  1  Response_reg  Response regulator receiver domain
    8.7e-18   63.6   0.0    1.7e-17   62.7   0.0    1.5  1  GerE          Bacterial regulatory proteins, luxR family
    3.2e-06   26.5   0.7    0.00014   21.3   0.1    2.5  2  Sigma70_r4    Sigma-70, region 4
    1.9e-05   24.3   0.1    4.1e-05   23.2   0.1    1.6  1  Sigma70_r4_2  Sigma-70, region 4
     0.0018   18.7   0.1     0.0032   17.9   0.1    1.4  1  HTH_40        Helix-turn-helix domain
     0.0018   17.8   0.0     0.0041   16.7   0.0    1.7  1  HTH_24        Winged helix-turn-helix DNA-binding
     0.0025   17.9   0.1     0.0097   16.0   0.0    2.1  2  HTH_7         Helix-turn-helix domain of resolvase
     0.0025   17.6   1.6      0.018   14.8   0.1    2.6  3  HTH_23        Homeodomain-like domain
     0.0065   16.5   0.1      0.022   14.7   0.0    1.9  2  HTH_29        Winged helix-turn helix
     0.0093   15.8   0.0       0.05   13.5   0.0    2.0  2  HTH_5         Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
      0.013   15.6   0.1      0.037   14.1   0.1    1.8  1  HTH_20        Helix-turn-helix domain
      0.016   15.0   0.2      0.041   13.7   0.0    1.9  1  HTH_38        Helix-turn-helix domain
       0.05   13.7   0.0       0.16   12.2   0.0    1.8  1  HTH_28        Helix-turn-helix domain
        0.1   12.4   0.1       0.24   11.2   0.1    1.7  1  HTH_10        HTH DNA binding domain
       0.15   12.0   0.5       0.72    9.8   0.1    2.2  2  HTH_11        HTH domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.0     2e-26   2.4e-23       1     111 [.      10     121 ..      10     122 .. 0.98

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 2e-26
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   v+++dD+ l+r++lr+lle + g+ +v+ea++++eal+l+ + ++d++llD++mpg     +++++r+e p+++vi+lt+h++ + +++ l  ga+ 
    KIR61521.1  10 VVVADDHMLFRDGLRELLEtDPGCAVVGEAATSDEALALVAHLHPDVLLLDVEMPGPGTPVVIDRVRREFPHTRVIVLTMHESAAIVQDLLARGAYA 106
                   789****************99**************************************************************************** PP

                   EEESSG-HHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkal 111
                   +l+K ++ eeL++a+
    KIR61521.1 107 YLVKNIAGEELIAAV 121
                   ************998 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   1.4e-20   1.7e-17       3      57 .]     154     208 ..     152     208 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 1.4e-20
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 Ls+RE++vLrl+a+ +sn +IA +l+i e TVk h++ni+ KL++ srv+++r a
  KIR61521.1 154 LSQRELDVLRLVAQAYSNGQIAHRLGITEGTVKRHLTNIYAKLDAVSRVDAIRKA 208
                 9***************************************************976 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.053        64      30      42 ..     133     145 ..     131     146 .. 0.89
   2 !   21.3   0.1   1.2e-07   0.00014       5      48 ..     154     196 ..     153     198 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.053
                 HTS-HHHHHHHHH CS
  Sigma70_r4  30 lgiSrerVrqiek 42 
                 l +Sre++ q+e+
  KIR61521.1 133 LSVSRETIGQLES 145
                 88********996 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 1.2e-07
                 S-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   5 LpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 L++re +vl+l+  + ++  +I+ rlgi++++V++++++   kL
  KIR61521.1 154 LSQRELDVLRLVA-QAYSNGQIAHRLGITEGTVKRHLTNIYAKL 196
                 8999999999997.445669*****************9999998 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   3.4e-08   4.1e-05      11      54 .]     154     196 ..     153     196 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.4e-08
                   S-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  11 LperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   L++r+  ++ l   + +s  +IA +lgi+egtVk++l    +kL
    KIR61521.1 154 LSQRELDVLRL-VAQAYSNGQIAHRLGITEGTVKRHLTNIYAKL 196
                   77888888899.689**********************9887776 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   2.6e-06    0.0032       6      42 ..     162     198 ..     158     219 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.6e-06
      HTH_40   6 lelleeglsieeIAkerglkesTIegHLaelieegee 42 
                 l+l+ + +s  +IA++ g++e+T+ +HL++++ + + 
  KIR61521.1 162 LRLVAQAYSNGQIAHRLGITEGTVKRHLTNIYAKLDA 198
                 68899999**********************9988442 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.4e-06    0.0041      19      38 ..     170     189 ..     154     191 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.4e-06
      HTH_24  19 sqreLAerlglSpstvnrrl 38 
                 s+ ++A rlg++ +tv+r+l
  KIR61521.1 170 SNGQIAHRLGITEGTVKRHL 189
                 89*****************8 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.1   3.8e+03      32      38 ..     134     140 ..     132     140 .. 0.84
   2 !   16.0   0.0   8.1e-06    0.0097       3      42 ..     151     189 ..     149     191 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.1
                 ---SSSS CS
       HTH_7  32 nisRsTv 38 
                  +sR+T+
  KIR61521.1 134 SVSRETI 140
                 79****7 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 8.1e-06
                 --SS-HHHHGGGGSSTTTT--STTTSSSS---SSSS--SS CS
       HTH_7   3 psklskndinrvvkLleeGisiskIAkevnisRsTvYRyl 42 
                 p++ls+ +   v++L+++ +s  +IA +++i+  Tv+R l
  KIR61521.1 151 PPLLSQ-RELDVLRLVAQAYSNGQIAHRLGITEGTVKRHL 189
                 777777.6678**************************976 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.34     4e+02      27      49 ..     133     153 ..     132     154 .. 0.82
   2 !   14.8   0.1   1.5e-05     0.018       8      36 ..     159     187 ..     155     192 .. 0.90
   3 ?   -3.4   0.1       8.1   9.7e+03       5      13 ..     205     213 ..     201     215 .. 0.59

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.34
      HTH_23  27 LgvsrrTvyrwlkryreeGlegl 49 
                 L vsr T+ +  +   +eG ++l
  KIR61521.1 133 LSVSRETIGQLESH--QEGTPPL 153
                 78******999998..7887777 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.5e-05
      HTH_23   8 lrillllaeGlsvreIAreLgvsrrTvyr 36 
                 l +l+l+a+ +s  +IA +Lg+++ Tv r
  KIR61521.1 159 LDVLRLVAQAYSNGQIAHRLGITEGTVKR 187
                 669************************98 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 8.1
      HTH_23   5 reRlrilll 13 
                 ++++ +++l
  KIR61521.1 205 IRKAVAARL 213
                 566666655 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.7   6.8e+03      41      52 ..     117     128 ..     110     134 .. 0.56
   2 !   14.7   0.0   1.9e-05     0.022       4      33 ..     161     189 ..     159     191 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.7
      HTH_29  41 laalldrrrsgr 52 
                 l a+ ++ ++gr
  KIR61521.1 117 LIAAVHSVGRGR 128
                 445555554333 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.9e-05
      HTH_29   4 allllaeGvstvsqiAkllglsrrtvyrwl 33 
                 +l+l+a++ s   qiA++lg+++ tv r+l
  KIR61521.1 161 VLRLVAQAYS-NGQIAHRLGITEGTVKRHL 189
                 89*******8.***************9986 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.96   1.1e+03      11      34 ..     133     156 ..     131     163 .. 0.79
   2 !   13.5   0.0   4.2e-05      0.05      14      38 ..     167     191 ..     157     194 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.96
                 HTTSSEEHHHHHHHHTS-HHHHHH CS
       HTH_5  11 LaegelcvcelaeelglsqstvSh 34 
                 L+ +  ++++l  + + +++ +S+
  KIR61521.1 133 LSVSRETIGQLESHQEGTPPLLSQ 156
                 555678999999999988888886 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 4.2e-05
                 SSEEHHHHHHHHTS-HHHHHHHHHH CS
       HTH_5  14 gelcvcelaeelglsqstvShHLkk 38 
                 + ++ +++a  lg++++tv +HL  
  KIR61521.1 167 QAYSNGQIAHRLGITEGTVKRHLTN 191
                 457899*****************65 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   3.1e-05     0.037      13      46 ..     159     190 ..     153     204 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-05
                 HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHH CS
      HTH_20  13 rrilraLaraegltaselaerldlskntlsyHLr 46 
                 +++lr+   a++ + +++a+rl+++  t+ +HL 
  KIR61521.1 159 LDVLRLV--AQAYSNGQIAHRLGITEGTVKRHLT 190
                 7899999..***********************94 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.4e-05     0.041      14      41 ..     162     189 ..     154     191 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.4e-05
      HTH_38  14 erllaeGlslreIArrLgrspsTIsREl 41 
                  rl a+ +s+ +IA rLg   +T+ R+l
  KIR61521.1 162 LRLVAQAYSNGQIAHRLGITEGTVKRHL 189
                 5788999*******************98 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00013      0.16       4      32 ..     160     188 ..     159     193 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
      HTH_28   4 eiikllaaGhsvreaArelgisrrtvyrW 32 
                  +++l+a+  s  ++A++lgi++ tv+r 
  KIR61521.1 160 DVLRLVAQAYSNGQIAHRLGITEGTVKRH 188
                 6888888889****************986 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1    0.0002      0.24      27      51 ..     172     196 ..     154     198 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
      HTH_10  27 keLAkelGIskstlsehLrkaeskl 51 
                  ++A +lGI++ t++ hL ++  kl
  KIR61521.1 172 GQIAHRLGITEGTVKRHLTNIYAKL 196
                 68******************99887 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.86     1e+03      25      32 ..     133     140 ..     132     142 .. 0.90
   2 ?    9.8   0.1    0.0006      0.72      17      43 ..     170     196 ..     157     208 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.86
      HTH_11  25 LnvSrrtv 32 
                 L+vSr t+
  KIR61521.1 133 LSVSRETI 140
                 89*****9 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0006
      HTH_11  17 sgeeLAeeLnvSrrtvrrdIkaLeelg 43 
                 s  ++A +L++++ tv r++  + +++
  KIR61521.1 170 SNGQIAHRLGITEGTVKRHLTNIYAKL 196
                 6689****************9987777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1688.61
//
Query:       KIR61522.1  [L=410]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-19   67.2   3.2    1.7e-18   66.2   1.6    2.4  2  HTH_30    PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
       0.14   12.3   0.1       0.14   12.3   0.1    2.9  4  HTH_28    Helix-turn-helix domain
       0.25   11.1   4.1        1.1    9.2   0.0    3.3  3  HTH_8     Bacterial regulatory protein, Fis family


Domain annotation for each model (and alignments):
>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       0.4   2.4e+03      11      26 ..     253     268 ..     247     271 .. 0.90
   2 !   66.2   1.6   2.8e-22   1.7e-18       1      58 [.     344     401 ..     344     402 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.4
                 TTT-HHHHHHHHTS-H CS
      HTH_30  11 nggnisatAkaLhvHr 26 
                 +gg++++ A+ L  Hr
  KIR61522.1 253 HGGRRRQLARVLRGHR 268
                 8999********9998 PP

  == domain 2  score: 66.2 bits;  conditional E-value: 2.8e-22
                 ...HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHH CS
      HTH_30   1 LleTLraylenggnisatAkaLhvHrnTlryRLrrieellgldlddpddrlaLylAlr 58 
                 L eTLra+l ++g+++++A+aL+vH++T+ryR+ +++el g  l dp++ l+L lAl+
  KIR61522.1 344 LAETLRAWLLHQGRRDDVAAALFVHPQTVRYRMAQVRELYGDRLLDPQTVLDLTLALA 401
                 78******************************************************97 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.82   4.9e+03       6      19 ..      27      40 ..      18      50 .. 0.64
   2 ?   -2.8   0.1       1.2   7.2e+03      13      30 ..     114     131 ..     105     132 .. 0.77
   3 ?   -2.8   0.1       1.2   7.2e+03      12      22 ..     254     264 ..     252     267 .. 0.68
   4 ?   12.3   0.1   2.4e-05      0.14       8      46 ..     351     390 ..     345     391 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.82
      HTH_28  6 ikllaaGhsvreaA 19
                ++++ a ++v+++ 
  KIR61522.1 27 VLPAVAERTVTAIT 40
                45566666666655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
      HTH_28  13 hsvreaArelgisrrtvy 30 
                  +v ++ ++  +s +tv+
  KIR61522.1 114 YRVGARVAWREVSTTTVR 131
                 578888999999999997 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.2
      HTH_28  12 GhsvreaArel 22 
                 G+++r++Ar l
  KIR61522.1 254 GGRRRQLARVL 264
                 66777777765 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 2.4e-05
      HTH_28   8 llaaGhsvreaArelgisrrtvyrWikryee.gGiagLvp 46 
                 +l+++++++++A++l ++++tv+  + + +e +G+  L p
  KIR61522.1 351 WLLHQGRRDDVAAALFVHPQTVRYRMAQVRElYGDRLLDP 390
                 46699******************99999999999766665 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.18   1.1e+03      24      30 ..      21      27 ..      20      29 .. 0.91
   2 ?    0.7   0.2     0.076   4.5e+02      16      29 ..     252     265 ..     251     272 .. 0.80
   3 ?    9.2   0.0   0.00018       1.1      17      41 ..     354     378 ..     345     378 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.18
                HHHHHTS CS
       HTH_8 24 AArlLGi 30
                AArlLG+
  KIR61522.1 21 AARLLGV 27
                9*****7 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.076
                 HTTT-HHHHHHHHT CS
       HTH_8  16 rtgGnkskAArlLG 29 
                  +gG++ + Ar L 
  KIR61522.1 252 VHGGRRRQLARVLR 265
                 699********996 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00018
                 TTT-HHHHHHHHTS-HHHHHHHHHH CS
       HTH_8  17 tgGnkskAArlLGisRrtLyrKLkk 41 
                 ++G++ ++A  L ++++t+++++++
  KIR61522.1 354 HQGRRDDVAAALFVHPQTVRYRMAQ 378
                 789********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3088.23
//
Query:       KIR61523.1  [L=363]
Description: stearoyl-CoA 9-desaturase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-10   40.2   0.0    5.5e-10   39.5   0.0    1.3  1  FAD_binding_6    Oxidoreductase FAD-binding domain
    1.5e-06   28.0   0.4    2.5e-06   27.3   0.4    1.4  1  Fer2             2Fe-2S iron-sulfur cluster binding domain
    1.8e-06   28.5   0.0    3.8e-06   27.5   0.0    1.6  1  NAD_binding_1    Oxidoreductase NAD-binding domain
  ------ inclusion threshold ------
      0.085   12.7   1.0       0.18   11.6   1.0    1.5  1  DHODB_Fe-S_bind  Iron-sulfur cluster binding domain of dihydr
       0.14   12.1   0.0       0.28   11.1   0.0    1.5  1  DUF3658          Protein of unknown function


Domain annotation for each model (and alignments):
>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   1.5e-13   5.5e-10      30      97 ..      75     144 ..      57     145 .. 0.93

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 1.5e-13
                    --TT-EEEEEECETTCCEEEEEE.BSST.TECCEEEEEEE--TT-HHHHHH.HCS-TT-EEEEEEEE-SE CS
  FAD_binding_6  30 lpvGqhvflrlkikgeaviRsYtpisse.nekGelellvkvypgGkmsqaL.delkigdtleikGPlGkf 97 
                      +Gq+v l ++++g + +R+Y+++s++   +G + + vk +p+G++s++L +++++g+ ++++  +G f
     KIR61523.1  75 HTPGQYVRLGVDVDGVRQWRAYSLTSAPgRRDGLISVTVKAIPDGRVSNHLvRRVRPGTLVQLDQAQGDF 144
                    578************************95699*******************999*********9999987 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.4     7e-10   2.5e-06       7      75 ..     286     353 ..     280     356 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 7e-10
                 EEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESCE.CTTSSSSTHHHHHTTEEEEGGGS CS
        Fer2   7 evevevadgettlldaaeenggidipysCggggCgtClvevlegev.qsdetelegeeldegklrlaCqt 75 
                 +v+v +adg+t llda e++ g+  p +C++g C  C+v + +g v      e++ +   +g l+ +C++
  KIR61523.1 286 GVTV-AADGGTALLDAGEDA-GVLMPSGCRMGICFGCVVPLRQGAVrDLRTGEITTAVPGDGVLIQTCVS 353
                 5666.6799999******99.*************************733333444444455567777776 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.1e-09   3.8e-06       1     107 [.     156     249 ..     156     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.1e-09
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvy 96 
                    ++ +G+Gi+Pv+++lra + +      vvlv+ ++t +d+++ +el+ la+  +g++++v   +r+ +++    g +  a l +l++ +  + ++ 
     KIR61523.1 156 FLTAGSGITPVMGMLRAGVPA---SADVVLVHSAPTPDDVIFAAELRGLAA--RGAIRLV---ERHTDTD----GVLGVAELADLVP-DHLDRQTW 238
                    6789****************8...578**********************54..4433333...4454554....5666666666666.56667888 PP

                    EECSHHHHHHH CS
  NAD_binding_1  97 vCGppgMikav 107
                     CGp g+ +av
     KIR61523.1 239 ACGPVGLLDAV 249
                    88888888776 PP

>> DHODB_Fe-S_bind  Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.0     5e-05      0.18       5      21 ..     311     327 ..     311     333 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5e-05
                      SSSSSSS-TTEEEETTC CS
  DHODB_Fe-S_bind   5 aCGvGaClgCvvktkgg 21 
                      +C +G+C+gCvv+ ++g
       KIR61523.1 311 GCRMGICFGCVVPLRQG 327
                      599*********99765 PP

>> DUF3658  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.9e-05      0.28      26      98 ..     122     211 ..     118     217 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.9e-05
     DUF3658  26 enaeLRiwkdgklvsveedyfDdlileaakke..wqkaarligevlghldqfis...............DefleyRireLikaGvlelrg 98 
                 +n+ +R+++ g+lv+ ++++ D +  ++a+++  + +a   i  v+g l+  +                D ++++ +r L+++G++ l +
  KIR61523.1 122 SNHLVRRVRPGTLVQLDQAQGDFVAPATAPRKvlFLTAGSGITPVMGMLRAGVPasadvvlvhsaptpdDVIFAAELRGLAARGAIRLVE 211
                 799****************************999****************9988778777777777776788888899999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2502.57
//
Query:       KIR61524.1  [L=389]
Description: fatty acid desaturase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-28   98.0   7.4      1e-27   97.6   7.4    1.1  1  FA_desaturase  Fatty acid desaturase


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   7.4   5.8e-32     1e-27       2     252 ..      72     339 ..      68     341 .. 0.68

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 5.8e-32
  FA_desaturase   2 swlalllalllglfllgitg.slaHeaaHgalfkkrklnrwlndllgallglplgisysawrisH.lrHHaytngpdeDpdlaplal......srf 89 
                    +w++  l+  l++   ++    ++H+++Hg++     + + +         +   ++ + w++sH   HH ytn  ++D dl+ +++      +++
     KIR61524.1  72 AWVVGTLG--LAVA-KILENmEIGHNVLHGQYDF-M-RDPKIHSTT---WEWDHVSPAEQWKHSHnQLHHTYTNVLGKDNDLG-YGImrvdedQPW 158
                    45555544..4444.455555********95552.2.333332333...4566668****************88888888886.444487766555 PP

  FA_desaturase  90 eglfryllrlllgllvlg...wllalvlglwlrrlarrrapsksrrrk.........wrllawlllllawlglwlalllllglall....lwlvpl 169
                    ++++  +   l+ l+++    + +a + +++ r l++ r +++++r++         +++l  +++ + + g  ++  l++ + ++    lw   +
     KIR61524.1 159 HPVHLGQ--PLWNLVNACffeYGIAAYDLELGRNLRKGRHKAPEFRARaravgrkirRQFLKDYVIHPLLSGPSFLSTLAATFTANlirnLWSHSV 252
                    5555554..444444444426666666666888888888888888887556666666666666666665433333333322222223344555555 PP

  FA_desaturase 170 llllfllalvlnyveHyg................gdwgerqvetsasirsaswllnlltgnlnyHieHHlfPgvpwyrLpelhrrlrellpehglp 249
                                ++ H+                 g+w++rq+ +sa+i+  s+ll ++tgnl+++ieHHlfP++p +r+ e+++++r+l++++gl+
     KIR61524.1 253 -----------IMCGHFPegvetfektsiegetrGEWYLRQMLGSANIS-GSRLLHIMTGNLSFQIEHHLFPDLPSCRYSEVAPEVRALFARYGLT 336
                    ...........5555555555555555588888****************.********************************************** PP

  FA_desaturase 250 yrs 252
                    y++
     KIR61524.1 337 YTT 339
                    *86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2929.63
//
Query:       KIR61525.1  [L=237]
Description: spermidine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.02   14.3   0.0      0.028   13.8   0.0    1.1  1  Spermine_synth  Spermine/spermidine synthase domain


Domain annotation for each model (and alignments):
>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.6e-06     0.028      24     135 ..      70     195 ..      65     204 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-06
                     EESS.TTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHSHHHHTTCGGCTTEEEEESTCHHHHCTCSS........-EEEEEEECCS.TTCSSC CS
  Spermine_synth  24 iiGG.gDGgvlrevvkhntvekitlvdiDqkvidfskkflpslaisafndarvklvlgdgfkflkayek........kfdvvivdsld.pvgpae 108
                     ++GG g G ++r  +  + v +  +v+  ++vi  +++ l  +a++  +d+r   v  d f+ +++ +          fd++  d    p+   +
      KIR61525.1  70 VVGGlGLGYTARTALEDPRVASLLVVEAIEDVIGWHRQGLLPFAAGLADDPRTRFVQADFFAAVADGAGfdpdspgrRFDAILLDVDHsPRHVLH 164
                     67773446677778888899999*********************9999************9999999988999999*******999888876655 PP

                     G....CSSHHHHHHHHHTEEEEEEEEEEEEE CS
  Spermine_synth 109 n....lFskeffdllkkvlkedGviilqaek 135
                          +++ e ++ l+  l +dGv+ l +++
      KIR61525.1 165 PshapFYTDEGLRRLAGLLHPDGVFALWSND 195
                     555699*******************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       178  (0.00992805); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1809.16
//
Query:       KIR61526.1  [L=122]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-39  133.3   0.0    3.7e-39  133.1   0.0    1.0  1  DUF4180   Domain of unknown function (DUF4180)


Domain annotation for each model (and alignments):
>> DUF4180  Domain of unknown function (DUF4180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.1   0.0   2.1e-43   3.7e-39       3     112 .]      10     118 ..       8     118 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.1 bits;  conditional E-value: 2.1e-43
     DUF4180   3 gvkvlvvsseepliaseqdaldliglayeegadvvalpkerlsedFfdLktglAGeilQkfvnYrlklaivGDisaylaaskaLrdfvyEsnkgkqiff 101
                 gv+vlv+++ +p++a+eqdaldlig+a+  ga+vva+p +rl+e Ff+L t++AG+++QkfvnYrl+la+vGDis +laas aLr++v+Esn+ ++++f
  KIR61526.1  10 GVPVLVCDAVGPVVATEQDALDLIGAAFL-GAQVVAVPVDRLAEGFFSLGTRFAGDVMQKFVNYRLRLAVVGDISGHLAASPALRALVHESNRADHVWF 107
                 789*************************9.********************************************************************* PP

     DUF4180 102 vadeeeaearL 112
                 ++d+++++arL
  KIR61526.1 108 LPDLDALDARL 118
                 ********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 918.82
//
Query:       KIR61527.1  [L=149]
Description: MerR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-16   58.4   0.2    1.2e-15   57.5   0.2    1.5  1  HTH_17        Helix-turn-helix domain
    4.6e-05   23.1   1.0    8.5e-05   22.2   1.0    1.5  1  MerR          MerR family regulatory protein
     0.0021   17.8   0.1     0.0081   15.9   0.0    2.1  2  HTH_23        Homeodomain-like domain
     0.0027   17.8   0.0      0.005   16.9   0.0    1.5  1  MerR_1        MerR HTH family regulatory protein
     0.0058   16.6   0.5       0.22   11.6   0.1    2.5  2  HTH_29        Winged helix-turn helix
  ------ inclusion threshold ------
      0.017   14.8   0.0      0.032   13.9   0.0    1.4  1  Sigma70_r4_2  Sigma-70, region 4
      0.044   13.9   0.0      0.096   12.8   0.0    1.6  1  HTH_3         Helix-turn-helix


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.2   4.5e-19   1.2e-15       1      45 [.       1      45 [.       1      47 [. 0.97

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 4.5e-19
      HTH_17  1 lltveEaAelLgvsrstvyrlirrgelpaakiGrrwriprsdlee 45
                +++ve++A+lLg++++tv+ +ir+g+l+a++iG+++ri r+dl++
  KIR61527.1  1 MYSVEQVADLLGLHVRTVRGYIRAGRLRATRIGKQYRIARADLDA 45
                79*****************************************98 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   1.0   3.3e-08   8.5e-05       2      37 ..       4      38 ..       3      38 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 3.3e-08
                HHHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSSEE CS
        MerR  2 IgevAeltGvsprtLRyYEreGLipppeRtegGyRl 37
                + +vA+l+G+++rt+R Y r G + +++R    yR+
  KIR61527.1  4 VEQVADLLGLHVRTVRGYIRAGRL-RATRIGKQYRI 38
                569*********************.99999999995 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.2e-06    0.0081      18      40 ..       2      24 ..       1      31 [. 0.91
   2 ?   -3.1   0.0       3.1     8e+03      30      36 ..      72      78 ..      70      80 .. 0.49

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.2e-06
      HTH_23 18 lsvreIAreLgvsrrTvyrwlkr 40
                +sv+++A++Lg + rTv+ ++++
  KIR61527.1  2 YSVEQVADLLGLHVRTVRGYIRA 24
                79****************88875 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.1
      HTH_23 30 srrTvyr 36
                 r T +r
  KIR61527.1 72 DRATADR 78
                5555554 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     2e-06     0.005       1      36 [.       2      37 ..       2      46 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2e-06
                EEHHHHHHHHTS-HHHHHHHHHHTT-S-EE-TTS-E CS
      MerR_1  1 ysigevakilgvtthtlrywekegllkpkrteggrr 36
                ys+ +va +lg+ ++t+r + + g l+  r ++ +r
  KIR61527.1  2 YSVEQVADLLGLHVRTVRGYIRAGRLRATRIGKQYR 37
                99*************************999666665 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   8.4e-05      0.22      14      35 ..       3      24 ..       1      59 [. 0.90
   2 ?    3.0   0.0      0.04     1e+02      15      32 ..      62      79 ..      55      81 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.4e-05
      HTH_29 14 tvsqiAkllglsrrtvyrwlkr 35
                +v q+A llgl+ rtv+ ++++
  KIR61527.1  3 SVEQVADLLGLHVRTVRGYIRA 24
                499****************986 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.04
      HTH_29 15 vsqiAkllglsrrtvyrw 32
                vs i+++ g++r t +r 
  KIR61527.1 62 VSSIVQVDGVDRATADRL 79
                899***********9995 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.2e-05     0.032      27      52 ..       2      27 ..       2      28 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
                  --HHHHHHHHT--HHHHHHHHHHHHH CS
  Sigma70_r4_2 27 lsykEIAellgisegtVksrlsRArk 52
                  +s +++A llg++++tV+ +++ +r 
    KIR61527.1  2 YSVEQVADLLGLHVRTVRGYIRAGRL 27
                  699*****************999885 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.8e-05     0.096      10      35 ..       2      29 ..       1      41 [. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.8e-05
                HHHHHHHHHHTSSHHHHHHHHTT..SSC CS
       HTH_3 10 lsqeeLAeklGvsrstisriEnG..ern 35
                +s e++A++lG++++t++ +++    r+
  KIR61527.1  2 YSVEQVADLLGLHVRTVRGYIRAgrLRA 29
                799*******************944444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1059.24
//
Query:       KIR61528.1  [L=185]
Description: hypothetical protein TK50_28505 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-28   98.1   1.1    6.3e-28   97.8   1.1    1.1  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   1.1   3.5e-32   6.3e-28       6     166 ..      10     162 ..       5     171 .. 0.89

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 3.5e-32
                 ---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH..HSHHHH CS
  His_Phos_1   6 HGetewnaegrlqgrtdvpLteeGreqAealaerlagepidaiysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiaeeypeeleaw 104
                 H  +e n +g+  g+    L+++Gr+ A++l++r ++ +++a+++S+l+Ra++Tae + + +g+pv +d +LrE+d+Gd  g + ae+++      +a+
  KIR61528.1  10 HSWSEDNDRGVATGWLPGRLSARGRALAAELGDRRRHDGLAAVFTSDLRRAVETAEVAFGGTGIPVLHDWRLRECDYGDRNGTSAAELHQG-----RAR 103
                 777899*****************************************************************************87777776.....233 PP

                 HHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGG CS
  His_Phos_1 105 lrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglpleel 166
                 + d+   ++pggEs+++ + R+ ++l+++  r +g+++lv+ H ++ +al + l glpleel
  KIR61528.1 104 HLDS---PYPGGESWRQAVLRAGRFLDDVPLRWSGRRILVIGHVATRWALDHLLDGLPLEEL 162
                 3333...3699********************************999777666666***9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1341.52
//
Query:       KIR61529.1  [L=89]
Description: hypothetical protein TK50_28510 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-21   76.0   0.2    2.4e-21   75.9   0.2    1.0  1  Trns_repr_metal  Metal-sensitive transcriptional repressor


Domain annotation for each model (and alignments):
>> Trns_repr_metal  Metal-sensitive transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.2   1.3e-25   2.4e-21       3      73 ..       9      83 ..       7      88 .. 0.83

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 1.3e-25
                     HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHH CS
  Trns_repr_metal  3 kkllnrLkrieGQvrgiqrmieedryCidiltQlaAvrsalnkvglelledhlkhcvaeaiee....ekieelie 73
                      ++l+rLkr++GQ+++++ mie +++C   ltQlaAv++al+++g +l+++ ++hc a + +      + eel++
       KIR61529.1  9 ADALTRLKRARGQLNAVIDMIESGEDCRATLTQLAAVSKALDRAGYKLIASGMRHCNAARDRGedpeMTEEELEK 83
                     5899*****************************************************944422246433334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 676.84
//
Query:       KIR61530.1  [L=462]
Description: hypothetical protein TK50_28515 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-80  271.7   8.5    1.1e-80  271.6   8.5    1.0  1  T7SS_ESX1_EccB  Type VII secretion system ESX-1, transport TM


Domain annotation for each model (and alignments):
>> T7SS_ESX1_EccB  Type VII secretion system ESX-1, transport TM domain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.6   8.5   6.3e-85   1.1e-80       4     467 ..       3     459 ..       1     462 [] 0.88

  Alignments for each domain:
  == domain 1  score: 271.6 bits;  conditional E-value: 6.3e-85
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.SS.SEEEETTT--EEEEETTEEEEES-H CS
  T7SS_ESX1_EccB   4 ttrdqvsgyrFllrRlehAlvrrdvrmlddplrsqsrallvGvvlavvvlagaavlallkPqgkvg.ds.kivadkesgalYvvvdgtLhPvlNl 96 
                     +++dq++ y+F+++R  +Alv r+++   +p r+   a l++v++a+++l+g+a+++l+   g+   d+ +++++kesga++v+ +++LhPvlN+
      KIR61530.1   3 SRQDQLHSYQFTVQRAVAALVMRETDPARSPFRRLAGAGLASVLVAAIALGGFALYGLFAGGGTKWrDAgAVIVEKESGARFVYREQKLHPVLNY 97 
                     789*********************************************************9998874559************************* PP

                     HHHHHHCTS-.B--EEE-HHHHHTS-B--EBS-TTS-S---B-SS.SSCEEEEEEEECSTTSS.....-EEEEEEEES----BTTEEE--TTEEE CS
  T7SS_ESX1_EccB  97 aSArLilgka.akpttvkdseLdklprGplvGIpgAPealpqsadldeskWtvCDtvssaasa.....savettviagklalgaraaelaadqav 185
                     aSA Li+g++ ak + v++++++ +prG ++GIp AP++lp++a l+++ WtvC ++++++ a     +a +  v++g  ++++ +++l +d  +
      KIR61530.1  98 ASALLIIGAErAKTVLVSRRSIEGVPRGLPLGIPDAPDSLPDRARLSTAGWTVCSAAGAERAAagaepAAPRSVVLIG--TAATGGRALGDDAIL 190
                     *******965278999***************************************99888777889988899999999..555566666665555 PP

                     EEEETTEEEEEETTEEEEE-TTSHHHHHCCT--TS--EE--HHHHHHS-EEEESS----TTTTSB-TTSS-TTSBTT-EEEEEET.TEEEEEEEE CS
  T7SS_ESX1_EccB 186 LvsadgktyLvydgkraeidladravtrAlglegakprpvsagllnalpevpplkaPaipgaGkpaglelggkarvGsvvkvsdadgeeeyYvvl 280
                     L + dg  +Lv+  +r+ +  +   v +Al  + ++++p +++l+n++p++++l++ ++pg G+p++  + g++ vG+v+ v++++g+++y v l
      KIR61530.1 191 LQHPDGGLHLVWRARRYLLR-DTGRVLAALAATRQRAVPAAPALINSIPAGADLAPLDLPGLGQPSPR-VTGAT-VGDVFLVRNSGGGRQYAVAL 282
                     5555*************887.8999***************************************7777.56656.9******************* PP

                     TTEEEEE-HHHHHHHHHHT-TT-SS--EE-CCHCCCS-E-----......--SS--EEE-TTTS-EEEEEEEE-STTSS-EEEEEEESS-SS-GC CS
  T7SS_ESX1_EccB 281 sdglqrvtevvadllrnansqgltepptvepdvlaklpvveelpvda...yPekppkivdvkeapvlCaswekgagdarakvallagaalPvpek 372
                     + gl+ vte++a ll +   qg  ep++++  + a+lp+  +l  +     P +pp++ ++++   lC+++  +    +    + +ga+lP  ++
      KIR61530.1 283 TGGLAGVTELQATLLLARTGQG--EPEAMTLGRFAALPKLPDLVPTGpaaPPPTPPRL-AAADPGALCVRVGDD----AGAGDVRLGATLPDLAD 370
                     ****************885555..5555555666666655554333334256666665.777999****98555....55678999****97655 PP

                     CGEEE-TTSSEE......EEESSBE..EEEEEECSTT..CEEEEEEEETTSEEEEE-SHHHHHHCT--S..-EE--HHHHTTSEEEEEE-CCCCT CS
  T7SS_ESX1_EccB 373 aktvelvsadgsgatvdavylppgtgalvqatgaepaseargslfyvsdtGvRYgipdeetakaLGlkee.pepaPwsilkllpaGPtLsradAl 466
                     + +     a+g+ a +d+v+++pg+ga+v+++ a +a  + g+l  v+d G RY ++d  ++  LG++++ p++ P+ +++l+paG+ L++a+A+
      KIR61530.1 371 SPQ-----ATGGTAVADHVVVEPGHGAVVESVAAPGA--TGGALSVVTDLGRRYVLADPTVLGMLGYRDVrPVRLPAGLVSLVPAGSPLDPAAAR 458
                     555.....7888999*****************99877..99****************************************************98 PP

                     - CS
  T7SS_ESX1_EccB 467 v 467
                      
      KIR61530.1 459 S 459
                     6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3254.47
//
Query:       KIR61531.1  [L=200]
Description: SAM-dependent methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-12   48.6   0.1      2e-12   47.7   0.1    1.5  1  Methyltransf_25  Methyltransferase domain
    3.1e-09   37.4   0.1    5.1e-09   36.7   0.1    1.4  1  Methyltransf_11  Methyltransferase domain
    1.9e-08   34.3   0.0    5.1e-08   32.9   0.0    1.8  1  Methyltransf_23  Methyltransferase domain
    9.5e-08   32.7   0.0    2.6e-07   31.3   0.0    1.7  2  Methyltransf_12  Methyltransferase domain
    5.8e-06   26.2   0.0    1.1e-05   25.2   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    0.00032   20.2   0.1    0.00035   20.1   0.1    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00046   19.7   0.0      0.018   14.5   0.0    2.2  2  CheR             CheR methyltransferase, SAM binding domain
    0.00096   18.7   0.0     0.0014   18.2   0.0    1.3  1  MTS              Methyltransferase small domain
      0.001   18.7   0.0     0.0021   17.7   0.0    1.5  2  MetW             Methionine biosynthesis protein MetW
  ------ inclusion threshold ------
      0.011   15.4   0.1      0.016   14.8   0.1    1.2  1  TPMT             Thiopurine S-methyltransferase (TPMT)
      0.011   15.8   0.0      0.016   15.2   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
      0.057   12.8   0.0      0.064   12.7   0.0    1.3  1  TehB             Tellurite resistance protein TehB
       0.17   11.5   0.0       0.25   11.0   0.0    1.1  1  N6_N4_Mtase      DNA methylase
       0.18   11.6   0.0       0.26   11.0   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.1   1.5e-15     2e-12       1      97 []      50     145 ..      50     145 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 1.5e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSS....STTTEEEEEEEST.GGGSSHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpf....edgsfDlvvssga.lhhlsdedlekalkei 89 
                      vLd+GcGtGr+ +al++r+  ++v+gvD ++ ++eaa   +    +  +++++d+ +l++    e + fD+ v++g+ + ++ +   +++l ++
       KIR61531.1  50 VLDAGCGTGRVGAALHARG--HTVVGVDADPVLVEAAGVDH----PGPRWLVADLAELDLaaagEPEPFDAAVLAGNvMAFVAPGTERRVLGRV 137
                      9*****************5..****************9998....7899******998854455888**********8888999999******* PP

                      HHHEEEEE CS
  Methyltransf_25  90 arvLkpgG 97 
                      a +++p+G
       KIR61531.1 138 AAHVRPDG 145
                      ******99 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.1     4e-12   5.1e-09       1      96 []      51     149 ..      51     149 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 4e-12
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT....-EEEEEEES-CCC-...CCHHHHHHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfedn....sfDlvvssevlhhv...edpekalkeiaRv 87 
                      Ld+GcGtGr+ +al+ rg++vvgvD ++ ++++a    ++++    ++vad+ +l ++ +     fD+ v+   ++ +      +++l  +a  
       KIR61531.1  51 LDAGCGTGRVGAALHARGHTVVGVDADPVLVEAAGVDHPGPR----WLVADLAELDLAAAgepePFDAAVLAGNVMAFvapGTERRVLGRVAAH 140
                      8******************************99977777765....89****9988766444449**988877665555876899********* PP

                      EEEEEEEEE CS
  Methyltransf_11  88 LkpgGllvi 96 
                      ++p+G +v+
       KIR61531.1 141 VRPDGAVVV 149
                      *****9985 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0     4e-11   5.1e-08      20     117 ..      44     149 ..      18     193 .. 0.64

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 4e-11
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.........kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvp.d..ppel 101
                       ++++rvLd GcGtG++   l ++g++v+gvD++p++ve a           a+ a+ d +    aa + + fd +vl      +  +    ++
       KIR61531.1  44 VPPRARVLDAGCGTGRVGAALHARGHTVVGVDADPVLVEAAGvdhpgprwlVADLAELDLA----AAGEPEPFDAAVLAGNVMAFVaPgtERRV 133
                      36899*******************************9998756666554442222222222....11122244444433322222202114466 PP

  Methyltransf_23 102 lrqiatllkpgGylll 117
                      l ++a++++p+G +++
       KIR61531.1 134 LGRVAAHVRPDGAVVV 149
                      6666666666666655 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   2.1e-10   2.6e-07       1      98 [.      51     146 ..      51     147 .. 0.83
   2 ?   -2.2   0.0       5.7   7.3e+03      23      41 ..     157     174 ..     153     183 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 2.1e-10
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvas.nvlhhl..kdirevldnirk 91 
                      L+ GcGtG++ +al ++  + +++gvD +p  +e+a     ++ + ++ + +l +ldl+   +++ fD+ v++ nv+  +   + r+vl ++++
       KIR61531.1  51 LDAGCGTGRVGAALHAR--GHTVVGVDADPVLVEAAGV---DHPGPRWLVADLAELDLAAAGEPEPFDAAVLAgNVMAFVapGTERRVLGRVAA 139
                      89***************..**************44443...444446788888888888777779****66554999999988888******** PP

  Methyltransf_12  92 lLkpgGr 98 
                      +++p+G 
       KIR61531.1 140 HVRPDGA 146
                      *****95 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.7
  Methyltransf_12  23 ytgvDispsaiedakekla 41 
                      y  +D++++a+ +a  +l 
       KIR61531.1 157 YRLTDFDADAV-AAGLRLE 174
                      66789999988.6555554 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   8.9e-09   1.1e-05       6     108 ..      49     148 ..      46     153 .. 0.67

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 8.9e-09
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieelekl.led.ekfDlilsnevlnaladp...dkil 94 
                      rvlD+GCGtG+ + +l+ +   + +vvG+D ++  +e A     + g       ++d  el+ +   + e+fD  +  + ++a+ +p     +l
       KIR61531.1  49 RVLDAGCGTGRVGAALHAR---GHTVVGVDADPVLVEAAGVD--HPGPR---WLVADLAELDLAaAGEpEPFDAAVLAGNVMAFVAPgteRRVL 134
                      8****************54...556************99873..55554...445555554433222247777777776666666552224566 PP

  Methyltransf_31  95 eeiervlkpggill 108
                      +++   ++p+g+++
       KIR61531.1 135 GRVAAHVRPDGAVV 148
                      66666666666665 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   2.7e-07   0.00035     154     200 ..      39      84 ..      36     148 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.7e-07
        PrmA 154 aleklvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkva 200
                 +l+++v ++++vlD G+G+G    a +  g ++vv+vD D+v v++a
  KIR61531.1  39 LLDAMVPPRARVLDAGCGTGRVGAALHARG-HTVVGVDADPVLVEAA 84 
                 79999***************9986655555.689**********998 PP

>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.045        57      25      44 ..      40      59 ..      22      84 .. 0.84
   2 !   14.5   0.0   1.4e-05     0.018     125     174 ..     101     150 ..      96     154 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.045
                HHHHTSSSEEEEEES-TTTH CS
        CheR 25 akaknekrvriwsagcssGe 44
                  a+   r r++ agc++G 
  KIR61531.1 40 LDAMVPPRARVLDAGCGTGR 59
                455667899*********96 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.4e-05
                 --TTT-SGGG--EEE.EEE-SSGGGC-CHHHHHHHHHHHCCEEEEEEEEE- CS
        CheR 125 lnllekksvlgklDv.ifcrnvliYfdeetqekvlerfaeklkpgglLllG 174
                 l+l++    ++++D  +++ nv+ +  + t ++vl r+a +++p+g +++G
  KIR61531.1 101 LDLAA-AGEPEPFDAaVLAGNVMAFVAPGTERRVLGRVAAHVRPDGAVVVG 150
                 55555.45566787538899******************************9 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.1e-06    0.0014      20      71 ..      36      84 ..      27     118 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.1e-06
                HHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHH CS
         MTS 20 sklLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesa 71
                 + Ll+++    + +vlD GcG+G +gaal ++  +  v+ vd+d   +e+a
  KIR61531.1 36 EARLLDAMVP-PRARVLDAGCGTGRVGAALHARGHT--VVGVDADPVLVEAA 84
                4557888887.5668***************998766..89999888777766 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.6e-06    0.0021       5      52 ..      38      84 ..      35     143 .. 0.66
   2 ?   -2.4   0.0       2.4   3.1e+03      51      81 ..     165     196 ..     159     198 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.6e-06
        MetW  5 eliaelikpgsrvldlGcGdGellellkeekqvdgrGleldeegvaec 52
                +l+  +++p++rvld GcG G +   l + ++ +  G++ d   v ++
  KIR61531.1 38 RLLDAMVPPRARVLDAGCGTGRVGAAL-HARGHTVVGVDADPVLVEAA 84
                567789*****************9999.55777777777776655443 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.4
        MetW  51 ecvakGlsviqgdldkdlenfedks.fdyvvl 81 
                 ++va Gl + +  +  dl  ++d++ f + vl
  KIR61531.1 165 DAVAAGLRLEHRFATWDLRPWRDDAdFAVTVL 196
                 67888999999989999988877642666665 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   1.3e-05     0.016      29      74 ..      39      83 ..      34      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.3e-05
                HHHT.T-S--EEEEEET-TT-HHHHHH-BTTEEEEEE-S-HHHHHH CS
        TPMT 29 fldalkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvek 74
                +lda  +++ +rvl  +CG +   ++l ++g++vvGv+  +  ve+
  KIR61531.1 39 LLDA-MVPPRARVLDAGCGTGRVGAALHARGHTVVGVDADPVLVEA 83
                5555.678999***************************88877766 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   1.2e-05     0.016      26      67 ..      47      84 ..      36      87 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-05
  Methyltransf_32 26 altvvDvGaGkgYLsfvlalkekeyklkvvgidakeelveka 67
                     + +v+D+G+G g  + +l+      ++ vvg+da   lve+a
       KIR61531.1 47 RARVLDAGCGTGRVGAALHA----RGHTVVGVDADPVLVEAA 84
                     5789****************....59*********9999875 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     5e-05     0.064      32      61 ..      48      77 ..      18     149 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5e-05
                -EEEEES-TTSHHHHHHHHTT-EEEEEES- CS
        TehB 32 gkvldlgcgqgrnslylsllgydvtawdkn 61
                ++vld gcg gr    l + g+ v  +d +
  KIR61531.1 48 ARVLDAGCGTGRVGAALHARGHTVVGVDAD 77
                689*********************999976 PP

>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0002      0.25     183     227 ..      38      82 ..      36      85 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0002
                  HHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHH CS
  N6_N4_Mtase 183 rlIklstkkgdivlDpFaGSGtTavaakelgrkfiGieieeeyve 227
                  rl+++  ++   vlD+ +G+G  ++a ++ g   +G++ ++  ve
   KIR61531.1  38 RLLDAMVPPRARVLDAGCGTGRVGAALHARGHTVVGVDADPVLVE 82 
                  8999999*******************************9987776 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00021      0.26      71     114 ..      44      84 ..      33      87 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
                 --TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHH CS
        PCMT  71 lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveea 114
                 + + arvL+ G+G+G   a l     +  +vv+++  + lve+a
  KIR61531.1  44 VPPRARVLDAGCGTGRVGAALH---ARGHTVVGVDADPVLVEAA 84 
                 67899**********9887765...3455689999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1369.43
//
Query:       KIR61532.1  [L=276]
Description: xylose isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-28   99.0   0.1    3.5e-28   98.5   0.1    1.1  1  AP_endonuc_2    Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
       0.05   13.3   0.0       0.18   11.6   0.0    1.9  2  AP_endonuc_2_N  AP endonuclease family 2 C terminus
      0.058   13.4   0.8        0.9    9.5   0.0    2.1  2  DUF2561         Protein of unknown function (DUF2561)


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   0.1   5.9e-32   3.5e-28       3     206 ..      27     223 ..      26     240 .. 0.92

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 5.9e-32
                   HHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHC.HTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCC..... CS
  AP_endonuc_2   3 aaaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypded.erearreesvdalkraielaaaLGapllvlhpGt..... 93 
                   +aa++Gf g+El+gr+    ++    +l elr+ ++++g+ ++ ++  +++   d+d er+a+   +v++l++++   a+LG+  +++++ +     
    KIR61532.1  27 LAAALGFAGIELRGRGELALAR----RLPELRR-ARAAGVVMPTVRVEPGPLIGDVDpERSAD---AVRDLRSQLSVVAELGGVGVTTPAARatpar 115
                   79******************96....6999987.57899**************9998555555...9**********************999***** PP

                   ..GBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC..HHHHHHHHHHTTTTEEEEEEHHHHHHHTTTHHHHHHHHHGGEEEE CS
  AP_endonuc_2  94 ..agagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgd..eelarlldavdspnvgvclDtgHlliaeedvddalraladrikhv 186
                      +++p+++++ +++ l ++l  l+++a++egv+l l +l++ + +l +  +e+++l+ av+ p v+v+ Dt+H++i+e+dv +alra a++++hv
    KIR61532.1 116 rlPPFQPPRPPAGDRQALLDALGTLGEHARAEGVTLFLAPLNRYEDHLVNrlDEAVALCAAVGLPSVRVAADTFHMNIEEDDVHAALRAAAPYLGHV 212
                   **899****************************************99999*********************************************** PP

                   EE.EESSTTTTSSTTEESTT CS
  AP_endonuc_2 187 HikDakgdlgagrdrhvpig 206
                   +++D+++         +++g
    KIR61532.1 213 QVSDTNR---------HQPG 223
                   **88887.........3333 PP

>> AP_endonuc_2_N  AP endonuclease family 2 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     3e-05      0.18       1      19 [.     228     246 ..     228     247 .. 0.93
   2 ?   -3.7   0.0       1.8   1.1e+04      33      44 ..     259     269 ..     255     273 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3e-05
  AP_endonuc_2_N   1 dwkdifsaLrqiGYdgplS 19 
                     dw + +++Lr+ GY g+l 
      KIR61532.1 228 DWPELVRTLRDLGYPGWLA 246
                     7****************96 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.8
  AP_endonuc_2_N  33 areAvaflkdkl 44 
                     +++Av +l+ ++
      KIR61532.1 259 LHQAVTVLR-HA 269
                     678999998.55 PP

>> DUF2561  Protein of unknown function (DUF2561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.3     0.026   1.5e+02      81     117 ..      50      86 ..      43      98 .. 0.87
   2 ?    9.5   0.0   0.00015       0.9      93     180 ..     105     197 ..      93     206 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.026
     DUF2561  81 vPlLLrarrvaeaePaarargaperaaaapargadap 117
                 +P L rar ++ + P+ r ++ p  + + p+r+ada 
  KIR61532.1  50 LPELRRARAAGVVMPTVRVEPGPLIGDVDPERSADAV 86 
                 78999************************99999975 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00015
     DUF2561  93 aePaarargaperaaaapar...gadapaeraeaeeasaekaealreaaewssaavdrvwLr..gtvvlasalGvalvavaaatyLmavgkdg 180
                 + Paara++a + ++ +p r   g  ++   a    +++ +ae+++   ++++   d++  r   +v+l +a+G   v vaa t+ m +++d 
  KIR61532.1 105 TTPAARATPARRLPPFQPPRppaGDRQALLDALGTLGEHARAEGVTLFLAPLNRYEDHLVNRldEAVALCAAVGLPSVRVAADTFHMNIEEDD 197
                 457777777766665554441103233333355666677888888889999999999998662269***********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1935.99
//
Query:       KIR61533.1  [L=449]
Description: hypothetical protein TK50_28530 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0047   15.7   5.0      0.056   12.2   0.4    2.8  2  Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domai


Domain annotation for each model (and alignments):
>> Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.4    0.0009        16      83     111 ..      38      66 ..      32      91 .. 0.77
   2 !   12.2   0.4   3.1e-06     0.056     404     485 ..     375     441 ..     364     448 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0009
                     --SBTTTB-SEEHHHHHHHHHHHHHH-HH CS
  Glyco_hydro_63  83 avPsRpfFPRGFlWDeGFhqllilkwdvd 111
                     +vPsR+ +P  + WD  F  + + +   d
      KIR61533.1  38 TVPSRTLYPHQWSWDSAFVAVGLAHVRPD 66 
                     69****************98877766555 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.1e-06
                     -SSSS-B-HHHHHHHHHHHHHH---SS-.--HHHHHHHHHHHHHHHHHHHHHHHTSS--SEE-TTT--EESSSS-TTGGGGH CS
  Glyco_hydro_63 404 nYWrgpiWininylilsalkhyskvegpykekakeiykeLrsnlvnnivkqyketGfvweqYddktGkgkgakeFtGWtslv 485
                      YWrgp W n+n+l+ ++l+ +++ +           + Lr  +++ ++     t  ++e + + tG g g+  F GWt+ +
      KIR61533.1 375 RYWRGPSWQNLNWLLWRGLRAHHRFDL---------AAGLRDSMIDLVA-----TAGCHEYFHPDTGAGLGSPAF-GWTAAL 441
                     6******************99885543.........3456666665443.....444666677777777766666.666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      147  (0.00819901); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3050.19
//
Query:       KIR61534.1  [L=234]
Description: cbs domain-containing membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-26   90.8   7.9    6.9e-16   58.4   0.2    2.9  3  CBS         CBS domain
    1.2e-10   41.5   4.1    3.2e-10   40.2   4.1    1.7  1  BON         BON domain
     0.0012   19.0   4.4      0.024   14.8   0.4    2.7  3  sCache_3_2  Single cache domain 3
  ------ inclusion threshold ------
      0.073   13.4   0.1       0.19   12.1   0.1    1.7  1  UPF0016     Uncharacterized protein family UPF0016


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.6   1.5e-12   6.9e-09       1      55 [.       6      60 ..       6      62 .. 0.93
   2 !   58.4   0.2   1.5e-19   6.9e-16       2      54 ..      90     142 ..      89     145 .. 0.95
   3 ?   -0.8   0.1       0.5   2.3e+03      12      48 ..     172     181 ..     155     212 .. 0.61

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 1.5e-12
                HHHHSBSSCEEEETTSBHHHHHHHHHHHT..SSEEEEEETTTBEEEEEEHHHHHHHH CS
         CBS  1 Vgdimtrdvvtvppdttleealelmrekg..vsrlPVVdedgklvGivtlrDllral 55
                V+d+mt+dv  v++ t  +e+++ +  +g  v++ PVVd+  +++G+v++ Dll ++
  KIR61534.1  6 VRDVMTTDVAAVREGTAYREIVDVL--TGwrVTAAPVVDGARRVLGVVSEADLLHKV 60
                89***********************..666699*****9999************875 PP

  == domain 2  score: 58.4 bits;  conditional E-value: 1.5e-19
                 HHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHH CS
         CBS   2 gdimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllra 54 
                 +d+m+ + vtv pd++  ea++lm++++v rlPVVd+ g+lvGivt+ Dllr+
  KIR61534.1  90 ADLMSAPAVTVGPDASCVEAARLMTQRHVKRLPVVDDLGRLVGIVTRGDLLRV 142
                 79**********************9888***********************96 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.5
                 EETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEH CS
         CBS  12 vppdttleealelmrekgvsrlPVVdedgklvGivtl 48 
                 v+  +                           G+vtl
  KIR61534.1 172 VTVHE---------------------------GVVTL 181
                 33333...........................33333 PP

>> BON  BON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   4.1   7.1e-14   3.2e-10       5      65 ..     151     211 ..     146     214 .. 0.86

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 7.1e-14
                 CHHHHHHHHHHHCHTTGCCCEEEEETTCEEEECEEECHHHHHHHHHHHHCCTTEEEEEEEE CS
         BON   5 iaakvkaalakdggldaadinVevenGvVtLsGtVdseaekekAveiarnvaGVkkVvnel 65 
                  a+ v + l +  g++ + ++V+v++GvVtL+G+   ++  ++A ++a++v+GV +Vv+ l
  KIR61534.1 151 RADVVGEVLRRTLGVRDDVVDVTVHEGVVTLTGQLERRSTVRLALRLAAQVSGVVEVVDAL 211
                 344556666666999*******************************************987 PP

>> sCache_3_2  Single cache domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.4   5.4e-06     0.024      78     123 ..      10      52 ..       2      52 .. 0.84
   2 !    5.1   0.1    0.0051        23      75     123 ..      85     135 ..      68     139 .. 0.74
   3 ?   -1.9   0.0      0.73   3.3e+03      17      39 ..     181     203 ..     158     214 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.4e-06
  sCache_3_2  78 lsgpataaalkagrayvgtvtgtlgpslrvklPvfdadgrviGivs 123
                 +   ++ aa+++g+ay+++v+++ g     ++Pv+d+  rv G+vs
  KIR61534.1  10 M--TTDVAAVREGTAYREIVDVLTGW-RVTAAPVVDGARRVLGVVS 52 
                 4..67899************996665.55679************97 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0051
  sCache_3_2  75 grkl.sgpataaalkagrayvgtvtgtlgpslrvk.lPvfdadgrviGivs 123
                 g +l  +++ a+a++ g+  + + +  l +  +vk lPv+d+ gr++Giv 
  KIR61534.1  85 GATLaADLMSAPAVTVGPDASCVEAARLMTQRHVKrLPVVDDLGRLVGIVT 135
                 5566666777777777776666665555666666548************96 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.73
  sCache_3_2  17 latsvagsrivrvaltdrapesg 39 
                 l+ ++ +++ vr al+ +a+ sg
  KIR61534.1 181 LTGQLERRSTVRLALRLAAQVSG 203
                 44455555555555555333333 PP

>> UPF0016  Uncharacterized protein family UPF0016
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   4.3e-05      0.19      26      52 ..      76     107 ..      71     124 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.3e-05
     UPF0016  26 rykplpVflGavlAlalmtvlsvllG.....s 52 
                 r++  +V +Ga+lA  lm++++v++G      
  KIR61534.1  76 RHREAQVKAGATLAADLMSAPAVTVGpdascV 107
                 66667799******************554331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1715.87
//
Query:       KIR61535.1  [L=135]
Description: heat-shock protein HtpX [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-23   83.5   0.0    2.2e-23   83.2   0.0    1.1  1  LMWPc     Low molecular weight phosphotyrosine protein phosph
  ------ inclusion threshold ------
      0.058   13.9   0.5       0.74   10.3   0.5    2.0  1  DinB_2    DinB superfamily


Domain annotation for each model (and alignments):
>> LMWPc  Low molecular weight phosphotyrosine protein phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   2.4e-27   2.2e-23       1     142 []       7     128 ..       7     128 .. 0.94

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 2.4e-27
                 EEEEESSSSSHHHHHHHHHHHHHHHTT-CCCEEEEEEESTSTTT-B--HHHHHHHHHTTS--TT-BB-BS-HHHHHHSSEEEESSHHHHHHHHHHCCTT CS
       LMWPc   1 vlfvClgNicRSpmAealfrkelekagleekvevdSaGtgalvgkradpravevlkekgislsghvarqlskeelaelDlilamdeenkreleslapek 99 
                 vlfvC+ N++RS+mA   +r+++     +++vev+SaG+   ++++++p ave+++e gi++ +++++ l+   +++ D+i++m      +++++ p+k
  KIR61535.1   7 VLFVCVHNAGRSQMAAGWLRHLA-----GDAVEVRSAGSA--PADTVNPAAVEAMAEVGIDITDQRPKLLEYATAESSDVIVTMGCG---DACPVFPGK 95 
                 89********************5.....567*********..******************************************654...459*****3 PP

                 GGGGEEEGGGGSSTSS---HTTSSHHHHHHHHHHHHHHHHHHH CS
       LMWPc 100 ekakvkllgeyteqldieDPyygeieafeevldeieeavkkll 142
                           y e+++++DP++++ ea++ ++dei ++v++ll
  KIR61535.1  96 ---------RY-EDWKLDDPAGQGVEAVRPIRDEIRSRVEALL 128
                 .........35.89*************************9986 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.5   8.3e-05      0.74      49      92 ..      91     134 ..      15     135 .] 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8.3e-05
      DinB_2  49 rlrgeeaprpgldpltppsaaealaylaevrarllallealtda 92 
                  + g++  + +ld+ + ++++ ++  ++e r r+ all++l++a
  KIR61535.1  91 VFPGKRYEDWKLDDPAGQGVEAVRPIRDEIRSRVEALLRELSPA 134
                 222333334455556669***********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 997.52
//
Query:       KIR61536.1  [L=355]
Description: arsenic transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-59  201.1   2.2    1.3e-59  201.1   2.2    2.0  2  SBF        Sodium Bile acid symporter family
     0.0099   15.5   0.4      0.026   14.1   0.4    1.7  1  Kinocilin  Kinocilin protein


Domain annotation for each model (and alignments):
>> SBF  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.1   2.2   1.5e-63   1.3e-59       1     193 [.      62     257 ..      62     259 .. 0.98
   2 ?   -0.7   0.1      0.11   9.4e+02     128     154 ..     324     350 ..     294     353 .. 0.73

  Alignments for each domain:
  == domain 1  score: 201.1 bits;  conditional E-value: 1.5e-63
         SBF   1 ailLilmmfpmglkveveklkellkrpkalllglvlqwvikPllmfilakillrdlklepelavGlilvglapggamsnvwtylakGdlelsvvlvals 99 
                 a++L++mm+p+++kv++++l++++ ++++l+ +l l+w+++P lmf+la+i+l+d    p +++Gli+vgla+++am+++w++la+Gd+e ++vlval+
  KIR61536.1  62 ALGLLVMMYPVLAKVRYDRLDTVTGNRRLLVSSLALNWIVGPALMFALAWIFLADQ---PAYRTGLIIVGLARCIAMVIIWNDLACGDREAAAVLVALN 157
                 589****************************************************9...**************************************** PP

         SBF 100 tllailltPlllyllaksl......eqttlkvpieeivksvlivviiPliaGillryillkhkGrewfeskllpavspisligllltivvifalkgeli 192
                 +++++l + ll +++++ l       +++l+v+ + i+  vli++++Pl+aG l+r++  + +Grew+es+llp + p +l+gll+tivv+fal+g+ i
  KIR61536.1 158 SVFQVLAFGLLGWFYLAVLpgwlglSGAELAVSGWDIARNVLIFLGVPLLAGWLTRRLGERARGREWYESRLLPRIGPAALYGLLFTIVVLFALQGDAI 256
                 *************************9**********************************************************************999 PP

         SBF 193 v 193
                 +
  KIR61536.1 257 T 257
                 7 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.11
         SBF 128 eeivksvlivviiPliaGillryillk 154
                 + +++ v  ++ +P+++G++  +++l+
  KIR61536.1 324 QALAGVVGPLIEVPVLVGLVYVSLWLR 350
                 556777777888999999887766665 PP

>> Kinocilin  Kinocilin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.4     3e-06     0.026      18      78 ..      32      90 ..      20      95 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3e-06
   Kinocilin 18 valsllagsiiigvsvskaaaavggifigaaglgllllaypflkarfnldrilpaignlri 78
                +a +ll g  + g+  +  a  +ggi +  a lgll+++yp l a++  dr+ + +gn r+
  KIR61536.1 32 MAAGLLLGRAVPGLDRALDAVQLGGISLPIA-LGLLVMMYPVL-AKVRYDRLDTVTGNRRL 90
                4678999999999999999********9865.*********99.67888999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2618.15
//
Query:       KIR61537.1  [L=133]
Description: ArsR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-16   57.5   0.0      2e-15   56.4   0.0    1.5  2  HTH_5     Bacterial regulatory protein, arsR family
    2.9e-13   49.6   0.4    4.7e-12   45.8   0.1    2.3  2  HTH_20    Helix-turn-helix domain
     0.0015   18.4   0.3     0.0071   16.2   0.1    1.9  2  MarR_2    MarR family
  ------ inclusion threshold ------
       0.17   12.1   0.0       0.25   11.5   0.0    1.2  1  HTH_34    Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   4.5e-19     2e-15       1      46 [.      39      87 ..      39      88 .. 0.98
   2 ?   -2.3   0.0      0.92   4.1e+03      19      29 ..     105     115 ..     100     117 .. 0.66

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 4.5e-19
                SHHHHHHHHHHTT...SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  1 dptRlkILklLae...gelcvcelaeelglsqstvShHLkkLreaGLVe 46
                dp Rl++L++ a+   ge cvc+l+ +++l+ +t+ShHL++LreaGLV+
  KIR61537.1 39 DPVRLQLLSMIASaegGEICVCDLTPAFDLTGPTISHHLRVLREAGLVD 87
                8***********************************************6 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.92
                 HHHHHHHTS-H CS
       HTH_5  19 celaeelglsq 29 
                 ++la+ l + +
  KIR61537.1 105 GQLAALLTVEP 115
                 67888777665 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.1   1.1e-15   4.7e-12       3      60 ..      33      92 ..      31      93 .. 0.96
   2 ?    1.8   0.0     0.056   2.5e+02      21      36 ..      98     113 ..      94     129 .. 0.80

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 1.1e-15
                HHHHHS-HHHHHHHHHH..STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTE CS
      HTH_20  3 iaeALahPvRrrilraL..araegltaselaerldlskntlsyHLrvLeeagLvevvreg 60
                +++AL++PvR+ +l+++  a++++ ++ +l  ++dl+  t+s+HLrvL+eagLv+ +r g
  KIR61537.1 33 AFKALGDPVRLQLLSMIasAEGGEICVCDLTPAFDLTGPTISHHLRVLREAGLVDAERRG 92
                59***************99999*********************************99987 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.056
                 TCTTB-HHHHHHHHTS CS
      HTH_20  21 raegltaselaerldl 36 
                 ra+++ +++la++l +
  KIR61537.1  98 RARPALLGQLAALLTV 113
                 6789999999999964 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.6e-06    0.0071       5      54 ..      40      89 ..      36      93 .. 0.89
   2 ?   -0.4   0.0      0.24   1.1e+03      22      38 ..     102     118 ..      97     120 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.6e-06
                HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2  5 paqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54
                p  +++L  ++ ++g+++ v +l+ +++l+ +++s +l+ L +aGLv  +
  KIR61537.1 40 PVRLQLLSMIASAEGGEICVCDLTPAFDLTGPTISHHLRVLREAGLVDAE 89
                677899999999999999999**************************654 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.24
                 EEHHHHHHHHTSSHHHH CS
      MarR_2  22 ltvgelarrlglsksav 38 
                    g+la+ l ++++a 
  KIR61537.1 102 ALLGQLAALLTVEPAAG 118
                 46789999999999875 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.6e-05      0.25       1      46 [.      41      88 ..      41      92 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.6e-05
      HTH_34  1 vRlavlsyLas..vdeadfvelkealeatdgnLsvhlkkLekagYiev 46
                vRl++ls+ as    e++  +l  a  +t   +s hl++L +ag +  
  KIR61537.1 41 VRLQLLSMIASaeGGEICVCDLTPAFDLTGPTISHHLRVLREAGLVDA 88
                8*********955568999*************************8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1043.16
//
Query:       KIR61538.1  [L=464]
Description: flavoprotein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-17   63.6   0.0    2.1e-16   60.1   0.0    2.3  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    5.6e-13   48.8   0.1    2.3e-12   46.8   0.1    1.9  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    7.7e-10   38.9   9.2    5.4e-09   36.1   8.7    2.4  1  DAO            FAD dependent oxidoreductase
    1.6e-09   37.4   0.0      0.025   13.7   0.0    3.1  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    3.8e-07   30.2   1.7    2.1e-06   27.8   0.2    2.6  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    4.3e-07   29.4   1.0    4.3e-07   29.4   1.0    2.0  3  FAD_binding_2  FAD binding domain
    7.1e-06   25.3   0.5     0.0035   16.4   0.2    2.4  2  Lycopene_cycl  Lycopene cyclase protein
      1e-05   25.0   2.2    0.00014   21.2   0.8    2.1  2  FAD_binding_3  FAD binding domain
    2.9e-05   23.0   0.2     0.0001   21.2   0.1    1.8  2  HI0933_like    HI0933-like protein
    3.9e-05   24.1   0.6      0.011   16.2   0.2    3.0  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    0.00028   20.3   3.5     0.0043   16.4   0.8    2.9  3  Amino_oxidase  Flavin containing amine oxidoreductase
    0.00069   18.9   0.0     0.0019   17.5   0.0    1.7  2  Thi4           Thi4 family
    0.00077   19.5   7.2        1.1    9.3   0.4    4.1  4  NAD_binding_9  FAD-NAD(P)-binding
    0.00095   19.6   0.0       0.86   10.1   0.0    2.4  2  NAD_binding_7  Putative NAD(P)-binding
  ------ inclusion threshold ------
      0.069   13.2   0.1        2.3    8.3   0.0    2.2  2  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
      0.096   11.8   0.9       0.62    9.1   1.7    1.8  2  GIDA           Glucose inhibited division protein A
       0.19   12.0   0.0        1.6    9.0   0.0    2.4  2  TrkA_N         TrkA-N domain


Domain annotation for each model (and alignments):
>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0     2e-19   2.1e-16       1     275 [.      10     317 ..      10     328 .. 0.74

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 2e-19
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkg.nignsiyrypkemtfispsftsekleipdlnaiseetspafslk.eeklsrkeale.Ylrevaksfe 95 
                  ++iGaGP Glaaa +l + gl   ++lE g ++g++++r+  + + +sp     + +i+d        s   + + +  ++++e+++ Ylr +a+  +
   KIR61538.1  10 VVIGAGPVGLAAAAHLHERGL-PCTVLEAGeSVGAAVRRWG-HVRAFSPW----RYDIDDAARRLLADSGWAAPDpDALPTGDELVDaYLRPLAELPQ 101
                  79*******************.89******999*******7.67777985....5666776666555554333341558899998755*******999 PP

  Pyr_redox_3  96 l..piklfeeVesvk...........kedegfevetske.tyeAkkviiAtGefdkPnklnipGeek......lvkhyskv.....kefhkyagqkvv 168
                  +  +++l  +V +++           +e+  f v+   + ++ A+ vi A G +d Pn+l+ +G          +   +        + + +ag++ +
   KIR61538.1 102 IapKVRLSARVVAISrlgldrlrtagREQAPFLVRLADGeELLARAVIDASGTWDTPNVLGASGLPArgeasaGAYLDHALpdvlgAHRDRFAGRHTL 199
                  96679******99983333333222223455999966544********************99886532211111222232233333466789****** PP

  Pyr_redox_3 169 ViGgknSavDaAlelvrk.....gaeVtvvtrgseiekee...sdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvk..tedgkkve 256
                  V+G++ Sa+ + l l++      g eVt+++r ++ ++     +      +    +rl++ v+ ++i++l+  +v++++    +++v+   +dg + +
   KIR61538.1 200 VVGAGHSAANTLLSLAELaadapGTEVTWAIRAASPTRAYgggDADALPARGALGSRLRAHVEAGRIRLLTGFSVHALDPAGDRVTVTvrRPDGGQES 297
                  ***************9987788899*******98777653221333446788999*******99***************9888777663355654444 PP

  Pyr_redox_3 257 v.kddvvlatGykpdlsflk 275
                  v  d++v+atG++pd+ + +
   KIR61538.1 298 VtVDRIVAATGFRPDHGIAA 317
                  426888888******99876 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.1   2.2e-15   2.3e-12       3     252 ..       9     323 ..       7     326 .. 0.71

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 2.2e-15
                  EEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH.................................HHHHCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx.................................xxxxxx RF
  Pyr_redox_2   3 vvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias.................................evvkkl 63 
                  vvviG+Gp Glaaa +l + g+  t++e     + ++  +g +   a+   + +++i                                    ++ ++
   KIR61538.1   9 VVVIGAGPVGLAAAAHLHERGLPCTVLEagesVGAAVRRWGHVR--AFS--PWRYDIDDaarrlladsgwaapdpdalptgdelvdaylrplAELPQI 102
                  9**************************75544222222222222..222..222222223355668889999*****************777445556 PP

                  HHHCCCCHCCTCEEEE.ESCEEEEETEEEC.......TCEEEEEESEEEE---E..EE-BCTCTTC......TTBEECCSECHHHHHHCCSS-T.... CS
                  xxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxx..xxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxx.... RF
  Pyr_redox_2  64 nqgielllgeevvkid.pgkkkvklekkke.......gdeekiaydklvlAtGs..sprdlgipGv.....aenvgklvrtldsaealklkllp.... 142
                    +++l ++  vv+i   g  ++    +++        d+e++ + +++ A+G   +p+ lg  G+     a  + +l ++l ++ + +    +    
   KIR61538.1 103 APKVRLSAR--VVAISrLGLDRLRTAGREQapflvrlADGEELLARAVIDASGTwdTPNVLGASGLpargeASAGAYLDHALPDVLGAH----Rdrfa 194
                  666666666..999984444777777777799*****99**************767888887776654333444444444444444444....25555 PP

                  .SEEEEES-SHHHHHHHHHHHHHT-.....EEEEEESSSSSSTTS-..........HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE..EEEEEETT CS
                  .xxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
  Pyr_redox_2 143 .krivvvGgGyiGvElAaalaklgk.....evtlveardrllrald..........kelsaaleealekeGvevklgtsvkeidgnge..klevvled 222
                   ++++vvG+G  +  +   la+l++     evt   ++  + ra++           +l+ +l++++e+  +++ +g sv+++d+ g+   ++v   d
   KIR61538.1 195 gRHTLVVGAGHSAANTLLSLAELAAdapgtEVTWAIRAASPTRAYGggdadalparGALGSRLRAHVEAGRIRLLTGFSVHALDPAGDrvTVTVRRPD 292
                  8*********9998777766666555555588876666666655554444444444678999999***********************6555577777 PP

                  SCE..EEESEEEE-S-EEES-HHCSHCCT-EE CS
                  xxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 223 gee..idadlvvvavGvrpstelleeklglel 252
                  g +  + +d +v a+G+rp++ ++  +l l l
   KIR61538.1 293 GGQesVTVDRIVAATGFRPDHGIA-AELRLDL 323
                  76667***************9887.6666655 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   8.7   5.1e-12   5.4e-09       2     233 ..       9     339 ..       8     375 .. 0.56

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 5.1e-12
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS...STHHSTH........................................ CS
         DAO   2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl...rylpeas........................................ 55 
                 vv+iG+G +Gl++A +L +rg   t+le+g+ +  ga  r +g++++     ++                                             
  KIR61538.1   9 VVVIGAGPVGLAAAAHLHERGlpCTVLEAGESV--GAAVRRWGHVRAFSpwrYD----Iddaarrlladsgwaapdpdalptgdelvdaylrplaelpq 101
                 9*****************************444..699999*9*9985455432....13345788888888889998888888777777777777776 PP

                 .........HHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESS...HHHHHHHH.......................................... CS
         DAO  56 .........elarlslealeelreleeelgididyrrtGllslaad...eeeleald.......................................... 100
                          +++  s+ +l++lr   +e++       + l+ la++          +                                          
  KIR61538.1 102 iapkvrlsaRVVAISRLGLDRLRTAGREQA-------PFLVRLADGeelL------Aravidasgtwdtpnvlgasglpargeasagayldhalpdvlg 187
                 666666555555555555555555555544.......3444444321220......1222333333444444444444444444444444444444444 PP

                 .........................HHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEE.EHHHHHHHHHHHHHHTT-EEEESECEEEEE CS
         DAO 101 .........................kllallleagldaelldaeevrelepalpgllgalfypdtgqv.dpakltaalaraaealGveilegtevtgle 173
                                           l++l+  a+++   ++ + +r+ +p     + a++  d+  +    +l   l++ +ea+ +++l+g  v +l+
  KIR61538.1 188 ahrdrfagrhtlvvgaghsaantllSLAELA--ADAPGTEVTWA-IRAASP-----TRAYGGGDADALpARGALGSRLRAHVEAGRIRLLTGFSVHALD 278
                 4444443333333333333332221212211..22211112222.334444.....233333343344355555555999999999************5 PP

                 EEETCEEEEE.EECT.EEE.EEEEEEEE--GGGHH..HHHTTCTTTSEEEEEEEEEEEEEECCTH CS
         DAO 174 eedgkvwgve.rttp.gen.daadavVnaaGawsd..llgllkeldlpispvrgqvlvlkplsek 233
                    g+ ++v  r  + g++ +++d +V a+G   d  +++    l+l + pv g   +l+pl ++
  KIR61538.1 279 P-AGDRVTVTvRRPDgGQEsVTVDRIVAATGFRPDhgIAAE---LRLDLDPVLGATRALAPLIDP 339
                 5.44446666677777777668899******9999744444...444455555555555554442 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0039       4.1       4      34 ..       8      36 ..       5      42 .. 0.83
   2 !   13.7   0.0   2.4e-05     0.025     185     228 ..     189     235 ..     165     239 .. 0.81
   3 !   13.5   0.0   2.8e-05     0.029     291     341 ..     262     310 ..     255     311 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0039
  K_oxygenase  4 DligiGiGpsnLsLailleevkkelkalfle 34
                  ++ iG+Gp  L+ a++l+e+   l + +le
   KIR61538.1  8 PVVVIGAGPVGLAAAAHLHERG--LPCTVLE 36
                 5899***************998..7777766 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.4e-05
  K_oxygenase 185 keellakkriaVvGsGqSaaeifedllrr...qkkvelklvtrseal 228
                  ++++ a+++ +VvG+G Saa+ +  l++    ++ +e+++ +r+++ 
   KIR61538.1 189 HRDRFAGRHTLVVGAGHSAANTLLSLAELaadAPGTEVTWAIRAASP 235
                  5567789999************9998877432556********9875 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 2.8e-05
  K_oxygenase 291 geerlrllpnrevesaeaegkgeveltlrneesgeeetlevdavvlATGYr 341
                  ++ r+rll+  +v++++  g+ +v++t+r   +g +e+++vd++v ATG+r
   KIR61538.1 262 EAGRIRLLTGFSVHALDPAGD-RVTVTVRR-PDGGQESVTVDRIVAATGFR 310
                  45689***************7.******99.77888999***********8 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.2     2e-09   2.1e-06       1      38 [.      11      48 ..      11      72 .. 0.84
   2 ?    0.4   0.1      0.72   7.6e+02       1      16 [.     200     215 ..     200     227 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasy 38
                   ++GaG  Gl+aA++L+++g+ +++le+++++G  ++++
     KIR61538.1 11 VIGAGPVGLAAAAHLHERGLPCTVLEAGESVGAAVRRW 48
                   8*******************************988776 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.72
                    EE--SHHHHHHHHHHH CS
  NAD_binding_8   1 IvGaGlsGlvaAylLa 16 
                    +vGaG s++ +   La
     KIR61538.1 200 VVGAGHSAANTLLSLA 215
                    8******987665555 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   1.0   4.1e-10   4.3e-07       2     148 ..       9     148 ..       8     154 .. 0.85
   2 ?    3.5   0.1     0.029        31     123     204 ..      70     157 ..      41     234 .. 0.75
   3 ?   -1.8   0.1       1.1   1.2e+03     135     200 ..     245     308 ..     185     319 .. 0.62

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 4.1e-10
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S.-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldela.dqplveafveaapeavdeL 96 
                    v+ViG+G  GLaAA+ ++e+Gl ++v+e +++  ga++   G + a + p        d ++++++ +l+ +++ a d+++  ++ e + + ++ L
     KIR61538.1   9 VVVIGAGPVGLAAAAHLHERGLPCTVLEAGES-VGAAVRRWGHVRAFS-PWR--Y---D-IDDAARRLLADSGWAApDPDALPTGDELVDAYLRPL 96 
                    9******************************9.7899999*******9.444..2...4.889999999999999999999999999999999999 PP

                    HHT.....T----BCCTSSB-EEE-TT-SSTEEEE-.STT-.......HHHHHHHHHH CS
  FAD_binding_2  97 eel.....gvpfsrtedgpvdvrelGglsatartlhdaadarr.etlvtghallarlv 148
                    +el      v++s     +v++++lG  + +    +++ +a++ ++l++g +llar v
     KIR61538.1  97 AELpqiapKVRLSA---RVVAISRLGLDRLR---TAGREQAPFlVRLADGEELLARAV 148
                    98888666666666...78888888888877...455788889999999999999876 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.029
                    EEEE-.STT-......HHHHHHHHHHHHHHTCT...EEEEESEEEEEEEECTT..EEEEEEEEET......TTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 123 artlhdaadarretlvtghallarlvesarkag...vdfqerteadeLivedg..rvtGavvenp......esgrevrirakavvlatgGfgr 204
                    a +++ a+d+  ++l tg +l+ + ++ + +++    +++ +++++++ +  g  r ++a  e+       ++g+  ++ a+av++a+g +  
     KIR61538.1  70 ADSGWAAPDP--DALPTGDELVDAYLRPLAELPqiaPKVRLSARVVAISRL-GldRLRTAGREQApflvrlADGE--ELLARAVIDASGTWDT 157
                    4566777777..999999999999999999999977677777777777663.23466666666556778445555..6679********9987 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.1
                    ....HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE--- CS
  FAD_binding_2 135 etlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatg 200
                    ++l    al  rl +++++  +++++  ++ +L   ++rvt  v +   +g+++ ++ +++v atg
     KIR61538.1 245 DALPARGALGSRLRAHVEAGRIRLLTGFSVHALDPAGDRVTVTVRR--PDGGQESVTVDRIVAATG 308
                    3455555566666666644447888888888885555566655555..444444445556666655 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   3.3e-06    0.0035       2      40 ..       9      44 ..       8      62 .. 0.88
   2 !    6.6   0.0    0.0033       3.4     118     141 ..     131     154 ..     111     170 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.3e-06
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieaspsllfpn 40
                   vvviGaGp gl+ Aa+l   + gl  +++ea++s+  ++
     KIR61538.1  9 VVVIGAGPVGLAAAAHL--HERGLPCTVLEAGESV-GAA 44
                   8****************..**************99.333 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0033
  Lycopene_cycl 118 geslvvleggrkirarlvvdargl 141
                    +  lv l++g+++ ar+v+da+g 
     KIR61538.1 131 APFLVRLADGEELLARAVIDASGT 154
                    466899*****************5 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.8   1.3e-07   0.00014       2      32 ..       7      37 ..       6      46 .. 0.91
   2 ?    2.8   0.0     0.053        56     111     165 ..     257     310 ..     252     320 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.3e-07
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvek 32
                    +V+++GaGp+Gl +a  L+e+G  ++++e 
     KIR61538.1  7 LPVVVIGAGPVGLAAAAHLHERGLPCTVLEA 37
                   68***************************97 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.053
                    HHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT CS
  FAD_binding_3 111 Lvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgr 165
                    L++h +e+g +++  +  v++l   ++ vt +vr  + g +e v+ + +v+a G+r
     KIR61538.1 257 LRAH-VEAGrIRLLTGFSVHALDPAGDRVTVTVRRPD-GGQESVTVDRIVAATGFR 310
                    5666.44555888888889999999*********996.5555************97 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   9.4e-08    0.0001       3      40 ..       9      46 ..       7      52 .. 0.91
   2 ?   -1.8   0.0      0.91   9.6e+02     139     175 ..     129     166 ..     107     178 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 9.4e-08
                 EEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHH CS
  HI0933_like  3 viviGgGaAGlmaAisaakrgkrVlllekakklgrKil 40
                 v+viG+G+ Gl aA+++++rg   ++le+++++g  ++
   KIR61538.1  9 VVVIGAGPVGLAAAAHLHERGLPCTVLEAGESVGAAVR 46
                 9********************************98776 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.91
                  TTE.EEEEE.TTEEEEESEEEE----SS-GG.GT--SH CS
  HI0933_like 139 edgkfrvktkseeeleadklvlAtGGlSiPk.lGstgk 175
                  e+  f v++ ++eel a++++ A+G    P+ lG++g 
   KIR61538.1 129 EQAPFLVRLADGEELLARAVIDASGTWDTPNvLGASGL 166
                  45558999999**************9999984688775 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   1.1e-05     0.011       2      35 ..       9      42 ..       8      48 .. 0.92
   2 ?    4.3   0.0     0.057        60       3      78 ..     199     288 ..     197     294 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.1e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                vvv+G+G +gl +A+ l+e g   tv+e+++ + 
  KIR61538.1  9 VVVIGAGPVGLAAAAHLHERGLPCTVLEAGESVG 42
                8***************************998876 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.057
                 EEECSSHHHHHHHHHHHHTT.....SEEEEEESSSSSSTTSS...H.......HHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox   3 vvvGgGyiglElAgalaelg.....kkVtvversdkllrllD...e.......easkilqeklekngievllntkveeiegsedgvesvkl 78 
                 +vvG+G ++      lael+      +Vt   r+  + r+++   +       +++++l+ ++e+  i++l++ +v +++  +d v+ v++
  KIR61538.1 199 LVVGAGHSAANTLLSLAELAadapgTEVTWAIRAASPTRAYGggdAdalpargALGSRLRAHVEAGRIRLLTGFSVHALDPAGDRVT-VTV 288
                 677777777666666666654444456666666666664433111211111112455566666666888888888888888887654.655 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.8   4.1e-06    0.0043       3      30 ..      18      45 ..      17      49 .. 0.91
   2 ?    0.8   0.0      0.22   2.3e+02     224     258 ..     105     150 ..      84     156 .. 0.81
   3 ?    1.1   0.1      0.17   1.8e+02     220     270 ..     263     319 ..     236     338 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.1e-06
                   HHHHHHHHHHTTEEEEEEESSSSSBTTS CS
  Amino_oxidase  3 GLaaArqLlsaGfdVtvlEardrvGGRi 30
                   GLaaA +L+++G+ +tvlEa + vG  +
     KIR61538.1 18 GLAAAAHLHERGLPCTVLEAGESVGAAV 45
                   9***********************9655 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.22
                    EEETSEEEEEEEE...........ETTC..EEEEETTSTEEEESEEEE CS
  Amino_oxidase 224 dirlntrVkeikr...........egdg..vtvtledgevveaDaVvv 258
                    ++rl++rV  i+r           e       v+l dge++ a+aV+ 
     KIR61538.1 105 KVRLSARVVAISRlgldrlrtagrE--QapFLVRLADGEELLARAVID 150
                    799**********999999876433..25699999***********95 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.17
                    TTTEEEETSEEEEEEEEETTCEEEEET..TSTEE..EESEEEE-S-HHHHH..SSEE CS
  Amino_oxidase 220 lrgldirlntrVkeikregdgvtvtle..dgevv..eaDaVvvTvplgvlk..ailf 270
                    +++ +++++  V+ ++  gd vtvt++  dg +   ++D++v ++ ++  +  a ++
     KIR61538.1 263 AGRIRLLTGFSVHALDPAGDRVTVTVRrpDGGQEsvTVDRIVAATGFRPDHgiAAEL 319
                    455566777789999998888888888664444457********9998877663333 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.8e-06    0.0019      20      60 ..       9      50 ..       2      80 .. 0.81
   2 ?   -2.2   0.0       1.9     2e+03      15      45 ..     193     227 ..     189     243 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.8e-06
                EEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT..TTT CS
        Thi4 20 vvivGaGssGLtaayylakkpdlkvailersvspGGGa..wlG 60
                vv++GaG+ GL+aa  l ++ +l  ++le+  s+G  +  w+ 
  KIR61538.1  9 VVVIGAGPVGLAAAAHLHER-GLPCTVLEAGESVGAAVrrWGH 50
                9*******************.*********9999986522544 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.9
                 HTEEEEEEE--SHHH....HHHHHHHHHCTTS-EE CS
        Thi4  15 yaesDvvivGaGssG....Ltaayylakkpdlkva 45 
                 +a    ++vGaG s     L+ a   a +p+ +v+
  KIR61538.1 193 FAGRHTLVVGAGHSAantlLSLAELAADAPGTEVT 227
                 66667789999988633334555555555666665 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.4     0.001       1.1       1      19 [.      10      28 ..      10      47 .. 0.83
   2 ?    0.8   0.0      0.42   4.4e+02     130     154 ..     129     153 ..      93     154 .. 0.79
   3 ?    3.5   0.1     0.063        66       2      28 ..     200     226 ..     199     245 .. 0.83
   4 !    7.1   0.1    0.0047       4.9     115     154 ..     264     308 ..     227     310 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.001
  NAD_binding_9  1 aivGaGprGlavlerLlar 19
                   +++GaGp Gla++++L +r
     KIR61538.1 10 VVIGAGPVGLAAAAHLHER 28
                   69**************998 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.42
  NAD_binding_9 130 radgqavlladgaslaadaVvLAlG 154
                    +++ + v+ladg++l a+aV+ A G
     KIR61538.1 129 EQAPFLVRLADGEELLARAVIDASG 153
                    33446899************98888 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.063
  NAD_binding_9   2 ivGaGprGlavlerLlarakkksplei 28 
                    +vGaG +++ +l  L++ a+++  +e+
     KIR61538.1 200 VVGAGHSAANTLLSLAELAADAPGTEV 226
                    8***************99955554544 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0047
  NAD_binding_9 115 vtvevhra.evvdleeradgqavll..adg..aslaadaVvLAlG 154
                     +++++++ +v++l++++d+++v+    dg  +s+++d++v A+G
     KIR61538.1 264 GRIRLLTGfSVHALDPAGDRVTVTVrrPDGgqESVTVDRIVAATG 308
                    36777777699*********865554444433679*********9 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00081      0.86       5      37 ..       4      36 ..       1      71 [. 0.86
   2 !    7.0   0.0    0.0073       7.7       5      31 ..     193     219 ..     191     222 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00081
  NAD_binding_7  5 lkgkkvlvvGgGevAarkvrklleagakvtvva 37
                   l++  v+v+G+G+v++  + +l e g   tv+ 
     KIR61538.1  4 LDDLPVVVIGAGPVGLAAAAHLHERGLPCTVLE 36
                   78999*******************999888864 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0073
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleaga 31 
                    + g++ lvvG+G  Aa+ + +l+e  a
     KIR61538.1 193 FAGRHTLVVGAGHSAANTLLSLAELAA 219
                    789*************99999988655 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0021       2.3      10      36 ..       4      30 ..       1      36 [. 0.86
   2 ?    2.6   0.0      0.13   1.3e+02       9      33 ..     192     216 ..     186     221 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0021
                  .TT-EEEEES-SHHHHHHHHHHHCCT- CS
  Shikimate_DH 10 lkekkvlliGaGemaelvakhLlakgv 36
                  l++  v++iGaG ++  +a hL+++g+
    KIR61538.1  4 LDDLPVVVIGAGPVGLAAAAHLHERGL 30
                  566789*****************9986 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.13
                   ..TT-EEEEES-SHHHHHHHHHHHC CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLla 33 
                   ++++++ l++GaG  a  ++  L++
    KIR61538.1 192 RFAGRHTLVVGAGHSAANTLLSLAE 216
                   678899********99988877765 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.7   0.00059      0.62       2      28 ..       9      35 ..       8      46 .. 0.86
   2 ?   -2.0   0.0       1.4   1.5e+03     131     151 ..     135     155 ..     124     186 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00059
                EEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLi 28
                v+ViG+G  G++AA+++ ++G++ + +
  KIR61538.1  9 VVVIGAGPVGLAAAAHLHERGLPCTVL 35
                9********************998766 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
                 EEETTS-EEEECEEEE--TT- CS
        GIDA 131 vvtedgetikakavviatGtf 151
                 v+++dge++ a+av+ a+Gt+
  KIR61538.1 135 VRLADGEELLARAVIDASGTW 155
                 78999***************5 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0015       1.6       1      33 [.       9      41 ..       9      54 .. 0.82
   2 ?   -0.8   0.0       1.6   1.7e+03      51      73 ..     373     395 ..     362     401 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0015
                EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidkdeer 33
                +++iG+G vG + a  L+e+g +++v +  e++
  KIR61538.1  9 VVVIGAGPVGLAAAAHLHERGLPCTVLEAGESV 41
                79*****************76469999987765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.6
                 SHHHHHHTTGGGESEEEE-SSSH CS
      TrkA_N  51 deevLeeagiekadaviaatgdd 73 
                  + +L + g e++++v+aa+  d
  KIR61538.1 373 APTFLMATGYEQVRSVVAALAGD 395
                 67899999*********998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 2941.09
//
Query:       KIR61539.1  [L=159]
Description: hypothetical protein TK50_28565 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
          4    7.7  17.8        1.7    8.9   3.3    3.1  3  DUF2530     Protein of unknown function (DUF2530)
        5.4    7.3  29.3          6    7.2   4.4    2.1  2  DUF456      Protein of unknown function (DUF456)
        9.5    6.5  19.1         12    6.3   2.8    3.5  3  VirB3       Type IV secretory pathway, VirB3-like protein


Domain annotation for each model (and alignments):
>> DUF2530  Protein of unknown function (DUF2530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   1.6      0.13   7.7e+02      17      53 ..       8      44 ..       2      55 .. 0.61
   2 ?    7.6   0.5   0.00074       4.4      10      43 ..      54      87 ..      49     104 .. 0.73
   3 ?    8.9   3.3   0.00028       1.7      16      54 ..     105     143 ..      99     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.13
     DUF2530 17 ivvgtllWlvalvvllvvgdaleswlpvclaGlvvGl 53
                ++ gt++++ ++  l++ +da  +    +++G++ G+
  KIR61539.1  8 LIGGTAVFAGGVGYLVARRDADRRRAGLAAVGAAGGV 44
                5556666666655555555555555566666666555 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00074
     DUF2530 10 LtdprpvivvgtllWlvalvvllvvgdaleswlp 43
                L+ +   + vg +++l++lv+ l+++++l + + 
  KIR61539.1 54 LATVALPATVGLVAFLAGLVAYLAFRRDLGRRRA 87
                666777889****************998876432 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00028
     DUF2530  16 vivvgtllWlvalvvllvvgdaleswlpvclaGlvvGll 54 
                 v+ + +++++va+ v l+++d+l     v l+G  +G l
  KIR61539.1 105 VVYLAVIAFVVAVGVYLLARDRLRISQAVILTGTTLGGL 143
                 788899******************************976 PP

>> DUF456  Protein of unknown function (DUF456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.4     0.001         6      94     132 ..      21      59 ..       4      63 .. 0.71
   2 ?    6.2  19.3     0.002        12      31     131 ..      56     157 ..      52     159 .] 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.001
      DUF456  94 gEllrarkdlreAlkaalgalvGfllgtlvklvlallml 132
                   + r+  d+r+A  aa+ga  G++++ l+ l la ++l
  KIR61539.1  21 YLVARRDADRRRAGLAAVGAAGGVAASFLLMLYLATVAL 59 
                 22344555799******************9999998876 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.002
      DUF456  31 flavllvlallglvldylapalgakraGaskrgligaivGaivGffllpplGlllgpflgaflgEllrar.kdlreAlkaalgalvGfllgtlvklvla 128
                 ++a+ + + l+++++ ++a + + +  G  +++l+++++Ga+v + +l+++ l + +f+ a+ + ll++   ++++A+  + ++l G+l+ +++ + ++
  KIR61539.1  56 TVALPATVGLVAFLAGLVAYLAFRRDLGRRRAALAASGAGAFVAAGFLFVVYLAVIAFVVAVGVYLLARDrLRISQAVILTGTTLGGLLAASALVFWVS 154
                 6777789999**********************************9999988888888888888776655413499999999999999999999998888 PP

      DUF456 129 llm 131
                 l  
  KIR61539.1 155 LSY 157
                 765 PP

>> VirB3  Type IV secretory pathway, VirB3-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0041        25      38      67 ..       5      34 ..       3      42 .. 0.83
   2 ?    6.3   2.8    0.0019        12      23      65 ..      44      86 ..      40      94 .. 0.81
   3 ?    0.0   8.1      0.17     1e+03      23      61 ..      89     126 ..      82     159 .] 0.58

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0041
       VirB3 38 lslwillllvplhlvlrliakrDpqmfrvl 67
                l+++i  ++v++ +v++l+a+rD +++r  
  KIR61539.1  5 LAILIGGTAVFAGGVGYLVARRDADRRRAG 34
                6778888899999**********9998865 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0019
       VirB3 23 vllnllvsvilflvglslwillllvplhlvlrliakrDpqmfr 65
                v++++l++++l+ v+l   + l+++++ lv++l+ +rD  ++r
  KIR61539.1 44 VAASFLLMLYLATVALPATVGLVAFLAGLVAYLAFRRDLGRRR 86
                5678888899999999999999999999999999999966655 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.17
       VirB3  23 vllnllvsvilflvglslwillllvplhlvlrliakrDp 61 
                 ++++++ +++++ + + +++++++ ++++v+  + +rD 
  KIR61539.1  89 LAASGAGAFVAAGFLFVVYLAVIA-FVVAVGVYLLARDR 126
                 455555555555544433333333.34444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1156  (0.0644765); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 1043.62
//
Query:       KIR61540.1  [L=285]
Description: hypothetical protein TK50_28570 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0064   16.1   0.0      0.027   14.1   0.1    1.8  2  FGE-sulfatase  Sulfatase-modifying factor enzyme 1


Domain annotation for each model (and alignments):
>> FGE-sulfatase  Sulfatase-modifying factor enzyme 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.041   7.4e+02       6      25 ..      60      79 ..      56     108 .. 0.74
   2 !   14.1   0.1   1.5e-06     0.027     114     143 ..     166     194 ..     117     205 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.041
                   EEE-SEEEEES-TSTTGGCC CS
  FGE-sulfatase  6 vlipgGsfemGseektande 25
                    l+pgG+ ++G +++++ ++
     KIR61540.1 60 ALVPGGTAQLGHDPDRFVPD 79
                   689********844444433 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.5e-06
                    S-EE---HHHHHHHHHTT-SSSSCTTBSTT CS
  FGE-sulfatase 114 egyrLPteaEweyAArggkkgreypwgdel 143
                     g r Pt +EweyA+ +g   + + wgd +
     KIR61540.1 166 LGLRPPTPDEWEYACGAGA-TTLFRWGDGY 194
                    67899**********7766.6899999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2219.15
//
Query:       KIR61541.1  [L=158]
Description: Appr-1-p processing protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00032   20.7   0.0    0.00044   20.3   0.0    1.2  1  Macro     Macro domain


Domain annotation for each model (and alignments):
>> Macro  Macro domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.5e-08   0.00044       2     115 ..      24     138 ..      23     141 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.5e-08
                 EEEETTSS-CSHHHHHHHHHHHHHHHHHHHHHHHHHHS.--TTSEEEEE-TTSSSSEEEEEES...E-TTTSTSTTHHHHHHHHHHHHHHHHHHTT-SE CS
       Macro   2 nAaNsrllggggvagaihraagkalkeeckelekkqgg.cllGeavvtpaynlpakyvihtvg...plftsskskeeeellakayknalelaeekgiks 96 
                 + +N  + +g+g   a  r+ ++  +++ +  ++++g+   lG + +++       +v ++v+    +  s++   + + ++++++ + ++a + +  s
  KIR61541.1  24 HVCNDIGGWGKGFVLAVSRRWPEPERAYRRWHRERSGNdFGLGATQLVQVRPDT--WVANMVAqrgIRTGSNGPPIRYDAVERCLDAVAAHATRLS-AS 119
                 789*******************99999987765554434788888888877666..7777765221555555777788888888888877777776.7* PP

                 EEEE-TTSSTTSBTHHHHH CS
       Macro  97 vafPaistGifgvpweeaa 115
                 v++P i++G+ g  we+ +
  KIR61541.1 120 VHLPRIGCGLAGGRWERIE 138
                 ***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1160.67
//
Query:       KIR61542.1  [L=201]
Description: MerR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-23   80.9   0.0    1.2e-22   80.2   0.0    1.4  1  Response_reg   Response regulator receiver domain
    1.1e-12   47.3   0.0    1.8e-12   46.6   0.0    1.3  1  GerE           Bacterial regulatory proteins, luxR family
    8.6e-07   28.6   0.1    2.7e-06   27.0   0.1    1.9  1  HTH_23         Homeodomain-like domain
    9.4e-06   25.2   0.1      2e-05   24.1   0.1    1.5  1  Sigma70_r4_2   Sigma-70, region 4
    4.6e-05   22.7   0.3    0.00011   21.5   0.3    1.7  1  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
    0.00012   21.5   0.0    0.00022   20.7   0.0    1.4  1  Sigma70_r4     Sigma-70, region 4
    0.00033   21.1   0.1    0.00067   20.1   0.1    1.5  1  HTH_40         Helix-turn-helix domain
     0.0023   18.0   0.2     0.0023   18.0   0.2    2.7  2  HTH_28         Helix-turn-helix domain
     0.0024   17.9   1.4     0.0074   16.3   0.2    2.4  2  HTH_29         Winged helix-turn helix
     0.0029   17.3   0.9     0.0048   16.6   0.1    1.8  1  HTH_38         Helix-turn-helix domain
     0.0046   16.7   0.6      0.039   13.8   0.6    2.4  1  HTH_10         HTH DNA binding domain
     0.0052   16.7   0.1      0.012   15.6   0.1    1.6  1  HTH_11         HTH domain
     0.0067   16.0   0.1      0.014   15.0   0.1    1.5  1  HTH_24         Winged helix-turn-helix DNA-binding
     0.0072   16.1   0.2     0.0072   16.1   0.2    2.6  3  HTH_IclR       IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.6   0.1      0.031   14.2   0.1    1.8  1  MarR_2         MarR family
      0.032   14.0   0.0      0.069   12.9   0.0    1.6  1  MerR           MerR family regulatory protein
       0.04   13.8   0.0      0.079   12.8   0.0    1.4  1  HTH_5          Bacterial regulatory protein, arsR family
       0.04   13.7   0.0       0.12   12.2   0.0    1.8  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
      0.061   13.4   0.0      0.097   12.7   0.0    1.3  1  HTH_Mga        M protein trans-acting positive regulator (MGA
      0.068   13.4   0.0       0.12   12.5   0.0    1.4  1  HTH_17         Helix-turn-helix domain
      0.096   12.8   0.2       0.29   11.2   0.1    1.8  2  DUF3489        Protein of unknown function (DUF3489)
       0.95    9.9   9.9       0.41   11.0   5.6    2.8  2  HTH_31         Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   1.5e-25   1.2e-22       2     111 ..       5     115 ..       4     116 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 1.5e-25
                   EEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   2 livdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   l+++D+ ++r +l+ ll+ e ++e+va+a +++ea+e ++e ++d+ llDi+mp+ +Gl+++ ++re+ p+++v+ilt+ +   ++ +a++aga +f
    KIR61542.1   5 LLAEDQGMMRGALALLLNlEPDIEVVAQAGTAAEAMEAAREVRPDVALLDIEMPDGSGLDTAAMLREQVPDCRVLILTTFGRPGYLRQAMEAGAAGF 101
                   899***************99***************************************************************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   l+K+   e+L  a+
    KIR61542.1 102 LVKDGPVEQLAVAV 115
                   *****999998776 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   2.2e-15   1.8e-12       2      56 ..     140     194 ..     139     195 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 2.2e-15
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrl 56 
                 +L+ REr vL+  a+G +  +IA++l++Se T+++++s +  K ++++r+e++  
  KIR61542.1 140 PLTCRERHVLTAAADGATIADIAARLHLSESTIRNYLSAAIGKTGTRNRIEAALS 194
                 79**************************************************975 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.1   3.3e-09   2.7e-06       9      40 ..     147     178 ..     144     193 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 3.3e-09
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTvyrwlkr 40 
                 ++l ++a+G+++++IA++L+ s++T++++l++
  KIR61542.1 147 HVLTAAADGATIADIAARLHLSESTIRNYLSA 178
                 6899999**********************987 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1   2.5e-08     2e-05      14      50 ..     144     179 ..     141     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 2.5e-08
                   HHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHH CS
  Sigma70_r4_2  14 rqreifllryleglsykEIAellgisegtVksrlsRA 50 
                   r+r +++  + +g ++++IA++l++se+t++++ls A
    KIR61542.1 144 RERHVLTA-AADGATIADIAARLHLSESTIRNYLSAA 179
                   78889999.89***********************988 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.3   1.4e-07   0.00011      17      49 ..     145     177 ..     145     180 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.4e-07
  HTH_Tnp_ISL3  17 eayilelllesrsvkavArqlgvSwtTVwrild 49 
                   e+ +l+++ ++++++++A++l++S++T++++l 
    KIR61542.1 145 ERHVLTAAADGATIADIAARLHLSESTIRNYLS 177
                   688999************************986 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.7e-07   0.00022       5      46 ..     141     181 ..     139     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.7e-07
                 S-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHH CS
  Sigma70_r4   5 LpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlr 46 
                 L+ rer+vl+   +   T ++I++rl++S++++r  ++ A+ 
  KIR61542.1 141 LTCRERHVLTAAADGA-TIADIAARLHLSESTIRNYLSAAIG 181
                 7889******998777.*****************99998876 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   8.2e-07   0.00067      10      39 ..     153     182 ..     146     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 8.2e-07
      HTH_40  10 eeglsieeIAkerglkesTIegHLaeliee 39 
                  +g +i++IA++ +l+esTI ++L  +i +
  KIR61542.1 153 ADGATIADIAARLHLSESTIRNYLSAAIGK 182
                 6899*********************99966 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.3      0.92   7.5e+02       5      20 ..     114     132 ..     112     138 .. 0.72
   2 !   18.0   0.2   2.8e-06    0.0023       4      34 ..     147     177 ..     146     188 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.92
      HTH_28   5 iikllaaGhsvre...aAr 20 
                 ++++++aGh+v +   aA+
  KIR61542.1 114 AVRRVLAGHRVIDpalAAA 132
                 899*****98766555444 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 2.8e-06
      HTH_28   4 eiikllaaGhsvreaArelgisrrtvyrWik 34 
                 +++ ++a+G +++++A++l++s++t++  ++
  KIR61542.1 147 HVLTAAADGATIADIAARLHLSESTIRNYLS 177
                 6888999*******************98775 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.8   1.5e+03       4      25 ..       4      24 ..       2      26 .. 0.78
   2 !   16.3   0.2   9.1e-06    0.0074       3      35 ..     147     178 ..     146     199 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.8
      HTH_29  4 allllaeGvstvsqiAkllgls 25
                 ll+ ++G++    +A ll+l 
  KIR61542.1  4 LLLAEDQGMM-RGALALLLNLE 24
                6899999998.88888888875 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 9.1e-06
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvyrwlkr 35 
                 ++l ++a+G  t+++iA++l ls++t++++l +
  KIR61542.1 147 HVLTAAADGA-TIADIAARLHLSESTIRNYLSA 178
                 5777889998.9******************965 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1     6e-06    0.0048      16      39 ..     151     174 ..     141     177 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6e-06
      HTH_38  16 llaeGlslreIArrLgrspsTIsR 39 
                   a G ++++IA rL+ s sTI +
  KIR61542.1 151 AAADGATIADIAARLHLSESTIRN 174
                 5689******************97 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.6   4.8e-05     0.039      24      50 ..     156     182 ..     141     185 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.8e-05
      HTH_10  24 vtlkeLAkelGIskstlsehLrkaesk 50 
                 +t++++A +l +s+st+ ++L++a+ k
  KIR61542.1 156 ATIADIAARLHLSESTIRNYLSAAIGK 182
                 799*********************998 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.5e-05     0.012      15      38 ..     155     178 ..     146     199 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.5e-05
      HTH_11  15 pisgeeLAeeLnvSrrtvrrdIka 38 
                   +++++A +L++S++t+r+++ a
  KIR61542.1 155 GATIADIAARLHLSESTIRNYLSA 178
                 3799*****************975 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.7e-05     0.014      16      39 ..     154     177 ..     148     180 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-05
      HTH_24  16 prisqreLAerlglSpstvnrrlk 39 
                  + +++++A rl+lS st++ +l 
  KIR61542.1 154 DGATIADIAARLHLSESTIRNYLS 177
                 579*****************9986 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2       5.4   4.4e+03      11      27 ..       4      20 ..       2      24 .. 0.62
   2 ?   -2.0   0.0         4   3.3e+03      39      50 ..      81      92 ..      80      93 .. 0.82
   3 !   16.1   0.2   8.8e-06    0.0072      12      40 ..     149     177 ..     147     178 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.4
                T-CTTBSS-BHHHHHHH CS
    HTH_IclR 11 alaeapqeltlselArr 27
                +l +++q++    lA  
  KIR61542.1  4 LLLAEDQGMMRGALALL 20
                56666777766666655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4
                HHHHHHTTSEE. CS
    HTH_IclR 39 LqtLvelGyveq 50
                L t+ + Gy++q
  KIR61542.1 81 LTTFGRPGYLRQ 92
                77888889**98 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 8.8e-06
                 -CTTBSS-BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR  12 laeapqeltlselArrtglpkStvhRlLq 40 
                 l++a+ + t++++A+r++l+ St +++L+
  KIR61542.1 149 LTAAADGATIADIAARLHLSESTIRNYLS 177
                 66777778*******************96 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   3.8e-05     0.031      15      40 ..     151     174 ..     127     181 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.8e-05
                 HCTTTSEEEHHHHHHHHTSSHHHHHH CS
      MarR_2  15 grrpgrdltvgelarrlglsksavsr 40 
                 ++++g   t++++a+rl+ls s++ +
  KIR61542.1 151 AAADG--ATIADIAARLHLSESTIRN 174
                 34455..7**************9976 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.4e-05     0.069       1      20 [.     157     176 ..     157     187 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.4e-05
                 EHHHHHHHHTTTHHHHHHHH CS
        MerR   1 tIgevAeltGvsprtLRyYE 20 
                 tI ++A ++ +s +t+R Y 
  KIR61542.1 157 TIADIAARLHLSESTIRNYL 176
                 8******************6 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.7e-05     0.079      17      37 ..     157     177 ..     153     178 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.7e-05
                 EHHHHHHHHTS-HHHHHHHHH CS
       HTH_5  17 cvcelaeelglsqstvShHLk 37 
                 ++ ++a+ l+ls+st++ +L+
  KIR61542.1 157 TIADIAARLHLSESTIRNYLS 177
                 899****************98 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00015      0.12      18      35 ..     156     173 ..     154     174 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
  HTH_AsnC-type  18 isyaeLAervGlSestvl 35 
                    ++ a++A+r++lSest++
     KIR61542.1 156 ATIADIAARLHLSESTIR 173
                    6899************97 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00012     0.097      22      42 ..     157     177 ..     149     179 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00012
     HTH_Mga  22 tldelakeLglseltlqsdis 42 
                 t+ ++a +L+lse+t+++++s
  KIR61542.1 157 TIADIAARLHLSESTIRNYLS 177
                 6789***************98 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00015      0.12       3      23 ..     157     177 ..     157     196 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00015
      HTH_17   3 tveEaAelLgvsrstvyrlir 23 
                 t++++A+ L++s+st++++++
  KIR61542.1 157 TIADIAARLHLSESTIRNYLS 177
                 89****************985 PP

>> DUF3489  Protein of unknown function (DUF3489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.7   4.7e+03      38      47 ..      13      22 ..      10      36 .. 0.72
   2 ?   11.2   0.1   0.00035      0.29      18      48 ..     152     182 ..     147     195 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.7
     DUF3489 38 vRgalagalk 47
                +Rgala +l 
  KIR61542.1 13 MRGALALLLN 22
                5999987765 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00035
     DUF3489  18 rpeGatiaeimeatgWqahtvRgalagalkk 48 
                 +++Gatia+i++++   + t+R  l+ a+ k
  KIR61542.1 152 AADGATIADIAARLHLSESTIRNYLSAAIGK 182
                 679**********************998755 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       5.3   4.3e+03      32      32 ..      38      38 ..      11      54 .. 0.62
   2 ?   11.0   5.6   0.00051      0.41       9      50 ..     143     192 ..      67     197 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.3
      HTH_31 32 s 32
                 
  KIR61542.1 38 E 38
                1 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00051
      HTH_31   9 lRera.......GLsqeevAerlgvsestlsrlEqGrrg.rpspavleal 50 
                  Rer+       G + ++ A+rl++sest++ + ++++g   ++  +ea+
  KIR61542.1 143 CRERHvltaaadGATIADIAARLHLSESTIRNYLSAAIGkTGTRNRIEAA 192
                 578889999999***********************888733355566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 1675.62
//
Query:       KIR61543.1  [L=255]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1842.26
//
Query:       KIR61544.1  [L=66]
Description: regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-22   77.1   0.2    8.3e-22   77.0   0.2    1.0  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.2   4.6e-26   8.3e-22       1      53 [.       6      59 ..       6      60 .. 0.89

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 4.6e-26
      DUF397  1 atWrKSsySgggggnCVEvaalpda......vavRDSkdpdgpvLtftpaewaaFlagv 53
                a+WrKS++Sg++gg+CVEv     a      v vRD+kd+dg++Ltf p++wa+F++ +
  KIR61544.1  6 ARWRKSTRSGNNGGACVEV-----AdnlpgvVLVRDTKDRDGGTLTFAPDAWAGFVSLA 59
                69*****************.....444455689***********************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       167  (0.00931452); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 495.52
//
Query:       KIR61545.1  [L=1240]
Description: amino acid adenylation protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-75  252.0   0.1    1.3e-74  251.3   0.1    1.3  1  AMP-binding      AMP-binding enzyme
    3.7e-60  203.6   0.2      9e-60  202.4   0.2    1.7  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    2.5e-38  130.7   1.0    2.5e-38  130.7   1.0    2.1  2  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    1.1e-19   70.9   0.0      2e-19   70.1   0.0    1.4  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    8.2e-11   42.1   0.2    3.6e-10   40.1   0.0    2.2  2  PP-binding       Phosphopantetheine attachment site
    8.9e-10   39.4   0.1      5e-09   37.0   0.1    2.5  1  AMP-binding_C    AMP-binding enzyme C-terminal domain
    1.4e-05   24.6   0.0    2.9e-05   23.6   0.0    1.4  1  Thiolase_N       Thiolase, N-terminal domain
  ------ inclusion threshold ------
       0.17   11.6   0.1       0.29   10.9   0.1    1.3  1  Alpha-E          A predicted alpha-helical domain with a cons
       0.19   12.0   1.3        1.6    9.0   0.1    2.9  2  SelB-wing_2      Elongation factor SelB, winged helix


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.3   0.1   6.6e-78   1.3e-74       3     423 .]      12     455 ..      10     455 .. 0.83

  Alignments for each domain:
  == domain 1  score: 251.3 bits;  conditional E-value: 6.6e-78
                  HHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE. CS
  AMP-binding   3 eqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli. 99 
                  ++ a + +++al    +gq ++Y+ l + +   Aa L ++Gv++gdrVa+l p ++  v+a+l++l aGa++vpl+p+++a++l+++l+++++++++ 
   KIR61545.1  12 DRSAIFAGRPALLG--DGQPVSYAALAASAGGHAALLAAAGVRPGDRVALLTPHGVPTVAAILGTLAAGAAYVPLDPGFPADRLRHMLAAARVRAVLt 107
                  5566678999**88..9*********************99*********************************************************7 PP

                  ........E..TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHH CS
  AMP-binding 100 ........a..tvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvan 187
                          +  t d+++ +kl  ++ +   + +  ++d+ + ++ + +  ++++  +   p ++++++pd lay+++TSG+TG PK+V  +hrnl++ 
   KIR61545.1 108 apehrdlaDrlTADHREPAKLPGTERQ-TGSGHREQVDRPGTAEPASVVLTTDAVTS--APLRPVPVDPDALAYVLFTSGSTGLPKAVGQTHRNLAHV 202
                  776655441333233334444443332.33444445555555555444444433333..4667889******************************** PP

                  HHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT CS
  AMP-binding 188 vaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaa.ldpklllelieklkvtviagvPrvleallesgalkaakkakdlss 284
                  v ++    + ++++dd++   +++++++++  +l+ all Ga+vv ++   + l   + +++iek++vtv +++P+v++ ll++   +      +l s
   KIR61545.1 203 VDNQ--IATLGIGPDDRLSLLASFSFDAAI-PDLYPALLTGAAVVPVDLRRHgLA--HAVDQIEKHRVTVYHSTPTVYRFLLDALGDR------RLDS 289
                  **95..3456778****************7.***************997777555..568***********************64444......799* PP

                  -SEEEEESS-EBHHHHHHHHHHHTC..EEEEEEEEGGGSSECEE....CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEE................ CS
  AMP-binding 285 lrlvllggeplspellrffralfge..evlegYGlTEttgvvtv....lpleedkkklgsvGkplpgvevkivDeetgepvp................ 360
                  +r vllgge+   + + + r++f +   +++gYG TE+t ++ +    ++ +   + +  +G++lpg e+++   et  +                  
   KIR61545.1 290 VRAVLLGGEQATHADAARGRDRFAPgcVLVNGYGATEMTFAARYalplAEADPAATGPLPIGTALPGYELHLTTAETTAEATaettdaatakaadaae 387
                  ***********************99999**************66678733344444455699**********988887777679999999******** PP

                  .....TTSEEEEEEEETTS-SEBTT-.HHHHHHHEEETCC.EEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 361 .....dgeeGellvrgpgvmkgYlkk.peataeafdsegr.wlrTGDlgrldedGyleivgRkkdliklr 423
                       d e+Ge++vrg +v++gYl + +++ ++  d +    +rTGDlg + + G l  +gR++ ++k+r
   KIR61545.1 388 aagtgDYETGEIVVRGRHVAPGYLDRaDDRFSRDAD-G-VwSYRTGDLGARLPGGDLVCLGRLDRQVKVR 455
                  *99999999***************862455555555.3.336**************************96 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.4   0.2   4.5e-63     9e-60       3     253 .]     655     905 ..     653     905 .. 0.89

  Alignments for each domain:
  == domain 1  score: 202.4 bits;  conditional E-value: 4.5e-63
                    -EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHHHHH CS
  ketoacyl-synt   3 pvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllleaaw 97 
                    ++++vG+++rfPg++d+ +fw +L++g dai++  +   +  +l + p+ +a+  +++ +g ld v+dfd+ ff + ++ea+++dpq+rl+le+aw
     KIR61545.1 655 EIVVVGLAGRFPGAPDPATFWWNLCAGVDAIHDHTD--AELAALGIGPRLLADPRHVRAAGRLDdVADFDADFFAFGAQEAARTDPQHRLFLETAW 748
                    7*******************************7774..556666688************************************************* PP

                    HHHHHHTS-HHTCTTGGEEEEEEESSTHH......HHHHHHHHHTT....GGGSCT.THHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHH CS
  ketoacyl-synt  98 ealedagltpeeldgsrvgvfiGvgagdy......aalaaldedgs....evkasp.kavgavlanviagrisyalglrGpsvtvdtACsSslvav 182
                    ealedag +p +  g  vgv+++++a+ y      +      ++ +    + +++    vg   +  ++g+++y+lgl+Gp+++v++ACsSslvav
     KIR61545.1 749 EALEDAGHDPSRFPG-LVGVYAATSANRYflfhlmD------NPAVvgdvDPDDWEaRLVGRQFTDHLPGQVAYRLGLTGPALAVQSACSSSLVAV 837
                    **********88665.7**********996665542......333334343444444789989********************************* PP

                    HHHHHHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 183 haavqslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                     +a qsl + ++d+alaGGv+++   +  +     g+ spdgrc+afd++a+G  +G GvG+v L rl+da
     KIR61545.1 838 CVAAQSLADYQCDIALAGGVNVT---WPRYRHTPGGMASPDGRCRAFDEAANGSGFGSGVGVVALRRLADA 905
                    *********************54...5567778999********************************997 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.7   7.4e+03      28      54 ..      40      67 ..      26      69 .. 0.71
   2 !  130.7   1.0   1.3e-41   2.5e-38       1     117 [.     913    1030 ..     913    1031 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.7
                     HHHHHHHHHHT--GGG.EEEEE-SS-SS CS
  Ketoacyl-synt_C 28 raiekalaeagvdped.vdyveahgtgt 54
                        ++ la agv+p d v ++  hg  t
       KIR61545.1 40 GGHAALLAAAGVRPGDrVALLTPHGVPT 67
                     4456788899999754388888888755 PP

  == domain 2  score: 130.7 bits;  conditional E-value: 1.3e-41
                       SEEEEEEEEEE--.STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdg.ahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHle 91  
                       yav+ g+av++dg  ++++  p +++qa+a++ ala a+v+p +v+++eahg+gtplgD+ E++al++v+g  a  +++a+gSvK+niGHl 
       KIR61545.1  913 YAVLPGWAVTNDGaDRAGFAVPGPSGQAAAVAGALAAAEVAPGEVRLIEAHGSGTPLGDALEVAALHEVYGGAAPAESCALGSVKTNIGHLD 1004
                       89************9***********************************************************999*************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaG+a+lik+vla++hgvipp+l++
       KIR61545.1 1005 AAAGIAGLIKTVLAVQHGVIPPNLHF 1030
                       *************************8 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0     1e-22     2e-19       1     112 []    1033    1145 ..    1033    1145 .. 0.92

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 1e-22
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi...vgvNsfGfGGsnvHviLksnkkekrkeeskeeslprLlvlsgrteeaveallekleeh.lldae 89  
                      P pei+ l+ g + V+t++ +wp+ +   +gv+sfG GG+n+Hv++++++ ++++ +++     +Ll++s+rt+ a++a l +l++h    ++
      KIR61545.1 1033 PHPEID-LAGGPFYVPTKARDWPQAArrvAGVSSFGLGGTNAHVVVEQPPPAEPPATPD--AVAHLLPVSARTPVALRAALRRLRQHlAGASP 1122
                      99****.*****************99999*********************999999999..**************************555577 PP

  KAsynt_C_assoc   90 llsllneilseeisrlpyRGyav 112 
                       l+ ++ +l+  ++++ +R+ +v
      KIR61545.1 1123 ALAEVAATLALGRREFGCRAAVV 1145
                      88888888888888888888765 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   1.8e-13   3.6e-10       2      67 .]     563     626 ..     562     626 .. 0.94
   2 ?   -2.2   0.1       2.8   5.6e+03      17      28 ..     717     729 ..     710     730 .. 0.71

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1.8e-13
  PP-binding   2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67 
                 ++ ++++ vlg+++ +   ++ +fd G+ Sll+  ++ +l ++fgv++pl  lfe+pt+++ a+++
  KIR61545.1 563 AVHDIWCAVLGRETVA--RTAGFFDVGGQSLLLGVVQQRLAARFGVRLPLLRLFENPTIEAQARLV 626
                 6899********9866..9*****************************************999875 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.8
  PP-binding  17 ei.dpdtdlfdlG 28 
                 ++ d d+d+f +G
  KIR61545.1 717 DVaDFDADFFAFG 729
                 33269*****999 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.1   2.5e-12     5e-09       1      76 []     463     532 ..     463     532 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 2.5e-12
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---.---HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg.sealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    e+E++l++ p+V  + +++     +G  l+a+  ++ g     +++L+a ++++l++ya p++vv+vde+p+t +GK
     KIR61545.1 463 EIEAVLAAEPGVGAVRAIA-----RGGELLAYARPAGGgL--DPAALRAALARRLPDYALPRAVVVVDEFPLTVTGK 532
                    8*****************4.....5556*******74432..36********************************9 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.5e-08   2.9e-05      65     112 ..     812     857 ..     801     868 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.5e-08
                 HHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEE CS
  Thiolase_N  65 qaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGv 112
                 q+a ++g+  + pa +v+ +csS+l av  aaqs+a  ++d+++agGv
  KIR61545.1 812 QVAYRLGL--TGPALAVQSACSSSLVAVCVAAQSLADYQCDIALAGGV 857
                 67778888..99***********************************8 PP

>> Alpha-E  A predicted alpha-helical domain with a conserved ER motif.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00015      0.29     201     276 ..    1087    1162 ..    1084    1166 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
     Alpha-E  201 iepervlelLlldednPrSlafqleeleealaalspaeseegrsseaerllgellaelrladieelleglhellde 276 
                  ++p++v++lL + ++ P +l++ l++l+++la  spa +e +++ +  r+    +a +  +d++  l gl+elld+
  KIR61545.1 1087 ATPDAVAHLLPVSARTPVALRAALRRLRQHLAGASPALAEVAATLALGRREFGCRAAVVATDLAAALAGLDELLDS 1162
                  5899******************************995555444444444444455555567777777888888876 PP

>> SelB-wing_2  Elongation factor SelB, winged helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00081       1.6      12      30 ..      83     102 ..      81     120 .. 0.82
   2 ?   -0.2   0.2      0.58   1.2e+03      16      32 ..     496     512 ..     490     520 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00081
                  TTS--EEHHHHHHHCS.SSS CS
  SelB-wing_2  12 PlrpGmskeeLrsrla.prl 30 
                  Pl pG ++++Lr++la  r+
   KIR61545.1  83 PLDPGFPADRLRHMLAaARV 102
                  9*************652444 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.58
                  -EEHHHHHHHCSSSS-H CS
  SelB-wing_2  16 GmskeeLrsrlaprlpa 32 
                  G++ ++Lr  la+rlp+
   KIR61545.1 496 GLDPAALRAALARRLPD 512
                  88899999999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 8527.52
//
Query:       KIR61546.1  [L=1180]
Description: peptide synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-93  312.9   0.0    6.1e-93  311.7   0.0    1.6  1  AMP-binding      AMP-binding enzyme
    1.9e-77  260.9   0.0    2.7e-77  260.4   0.0    1.1  1  Condensation     Condensation domain
    7.5e-29   99.9   0.0    6.2e-13   48.9   0.0    3.5  4  PP-binding       Phosphopantetheine attachment site
    3.4e-07   31.1   0.9    1.7e-06   28.9   0.9    2.4  1  AMP-binding_C    AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
       0.53   10.3   2.1       0.81    9.7   0.2    2.1  2  Chlorosome_CsmC  Chlorosome envelope protein C


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.7   0.0   1.7e-96   6.1e-93       2     423 .]      27     410 ..      26     410 .. 0.89

  Alignments for each domain:
  == domain 1  score: 311.7 bits;  conditional E-value: 1.7e-96
                  HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE CS
  AMP-binding   2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli 99 
                  ++qaa+tp++va+ +   +++lTYrel  r+  +Aa+Lr++Gv++++rV+++ +++p++vv++l++l aGa +vpl p+ ++++l+ i +d++++v++
   KIR61546.1  27 AAQAARTPGAVAVRQ--WDERLTYRELVGRAAGVAAALRERGVGRHSRVGVCGHRRPDLVVTVLGVLLAGACYVPLEPGGPRRRLREIAADAGVRVVV 122
                  579**********77..89********************99********************************************************* PP

                  ETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH.HHHC CS
  AMP-binding 100 atvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk.letr 196
                     d        +a+a+  +v+ v+ l          l++ ++          + +++p d+ay+++TSG+TG+PKGV  +hrn+v +v+ ++ l   
   KIR61546.1 123 --GD--------AAEAEFGDVSGVTALG---------LPGPAP--------LAPCPARPGDPAYVLFTSGSTGRPKGVLTTHRNVVEFVTGCAaL--- 190
                  ..22........2222223344444333.........333332........2344679*********************************8643... PP

                  SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS- CS
  AMP-binding 197 fklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggep 294
                   +++++ + l i++l ++++  ++l+++ll G+tv l+  d++ dp++l++++++++v+  + +P+vl +l     ++      +l+++r+vl+gge+
   KIR61546.1 191 TGADASVRSLGIASLGFDAAT-MDLFVPLLFGGTVQLVGADDRSDPARLARFVAAHEVNWGFITPTVLSMLD----PA------ELPGWRTVLCGGEA 277
                  344557799***********6.*******************9999*************************92....34......899*********** PP

                  EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE. CS
  AMP-binding 295 lspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafds. 391
                  +++el+ ++    + ++++gYG+TEtt+ +++++l   ++ +  +G plp+ ++++vD + ++pvp+ge+Gell++gpg++ gYl++p +tae+f++ 
   KIR61546.1 278 VPAELAARWAPG-R-RFVNGYGPTETTVLAVTAELTAAETDPVPIGLPLPNHRAYVVDAD-LRPVPPGETGELLIGGPGLADGYLNRPGLTAERFVPd 372
                  ******999987.3.59*************88666666666777***************9.***********************************78 PP

                  .....T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 392 .....e.grwlrTGDlgrldedGyleivgRkkdliklr 423
                       + +r++rTGDl++  +dG++ ++gR++ ++k+r
   KIR61546.1 373 pfsglPgERLYRTGDLVTQAPDGRIVYLGRADRQVKIR 410
                  999995467***************************96 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.4   0.0   7.6e-81   2.7e-77       6     445 ..     604    1038 ..     602    1043 .. 0.95

  Alignments for each domain:
  == domain 1  score: 260.4 bits;  conditional E-value: 7.6e-81
                    EXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHHHH CS
  Condensation    6 plspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeeaie 100 
                    +lsp Q+r+wf+ +l ++s  yn++++ +l+geld+ +l  al+++ erhd+LR ++  +  g p+ v  e  +v + v++++   + +  + + 
    KIR61546.1  604 TLSPPQRRLWFVDQLAPSSAPYNIAVAHRLRGELDVPALGAALRAVAERHDVLRWRIP-QTAGVPYAVCAEPTDVAVPVVDLT--GGGDPAAELA 695 
                    59*******************************************************5.66**********************..6666677788 PP

                    HHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--.HHHHHHHHHHHHCSHHHHHH CS
  Condensation  101 efaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktp.Ykdyaeweqqyleskdleke 194 
                    +++ + +++ fdL++gp++++ ++++ + +++l ++ HH ++DG+S  ++  dla++Y+ +  g+++ lp     Y+dya+w+++ +  ++  ++
    KIR61546.1  696 RMLADGAAHAFDLATGPPWQVTVYRLGAAEHVLAVTWHHAVFDGWSEAVFYADLAAAYARAVAGDDPALPAPAArYADYAVWRAE-RDRRRGADD 789 
                    888889************************************************************888877778*******888.88888**** PP

                    HHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHH CS
  Condensation  195 eaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdie 289 
                     a+Ws  l+g   vl+Lp+d +rpa++++ + + ++++++e   ++r la+  ++t+  vlla +g lLs++tg+dd vvg +++ R  +  +++
    KIR61546.1  790 LAWWSAHLAGAPTVLELPRDGPRPAVQTYAGVEAAVTFSAEADRAVRALAERRSTTVAAVLLAGFGELLSRLTGGDDHVVGAIVADRRLA--AFD 882 
                    **********999999**************************************************************************..*** PP

                    C--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE... CS
  Condensation  290 rmvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvssve 384 
                    ++vG+F+ t+P+r++  ++ +f+el+ r  ++l++a  h g ple++v+ l + r++sr pL+++ f+  n         e++l+  +l  ++v+
    KIR61546.1  883 DVVGFFIDTVPVRVRT-AGASFAELVDRCAAELHDATAHPGAPLERIVEALGVGRDTSRAPLVQVLFNVLN-------FAEPRLALAGLAGEPVP 969 
                    ****************.5666************************************************99.......77888888899889999 PP

                    .E.....SSEEEEEEE.......TTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC- CS
  Condensation  385 .aeeeskydlslease.......tngkltikieYntslFdeetierflerlkelleqviehpeqklsel 445 
                      +  s++dl++ ++e         g+l +++ +n +lFd   +e +l  l  l+ ++++ p+++  e+
    KIR61546.1  970 vPKPGSPFDLTVYVVEravtgadGPGRLGVEVVFNPDLFDADRVEAMLADLAALVGALAAAPQSPAGEV 1038
                    99************9988655434589************************************998875 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.4   4.9e+03       6      46 ..      91     131 ..      88     143 .. 0.81
   2 ?   -2.8   0.0       2.3   8.4e+03       7      33 ..     181     206 ..     178     207 .. 0.76
   3 !   46.8   0.0   7.7e-16   2.8e-12       2      67 .]     525     587 ..     524     587 .. 0.94
   4 !   48.9   0.0   1.7e-16   6.2e-13       2      67 .]    1082    1145 ..    1081    1145 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.4
  PP-binding   6 lvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefg 46 
                 l+a ++ vple+ +p   l++   D  + v +  a e+efg
  KIR61546.1  91 LLAGACYVPLEPGGPRRRLREIAADAGVRVVVGDAAEAEFG 131
                 67889999999999999999998887777777777777776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.3
  PP-binding   7 vaevlgvpleeidpdtdlfdlGlDSll 33 
                 v+ v+g+++   ++d++ ++lG+ Sl 
  KIR61546.1 181 VEFVTGCAALT-GADASVRSLGIASLG 206
                 55578888777.689*******98886 PP

  == domain 3  score: 46.8 bits;  conditional E-value: 7.7e-16
  PP-binding   2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67 
                 ++ +++a++lg +    +pdtd+   G++S++a++l+aal++e+g +++ +d+f+ +tla l++++
  KIR61546.1 525 AVARAWARLLGAA---PGPDTDFLAAGGNSIAAMRLVAALRAELGRAVDTRDVFAGRTLAGLVQRI 587
                 68899******87...468********************************************987 PP

  == domain 4  score: 48.9 bits;  conditional E-value: 1.7e-16
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   +  +++evlg++  ++++ +++fd G++Sl+++++ a+l ++ g +i + dlf hpt+++laa+l
  KIR61546.1 1082 LVAGIWREVLGRD--RVGVADNFFDIGGHSLALAAVHARLTAATGRSIAMLDLFRHPTVRALAAHL 1145
                  5789*******99..5779*********************************************97 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.9   4.8e-10   1.7e-06       1      71 [.     418     485 ..     418     491 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 4.8e-10
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpk 71 
                    evE++l+  p+V+ +++ +v+ +  G  lvaf +++d +   +++L+a+++ +l + ++p +v  ++elp 
     KIR61546.1 418 EVEAVLAGLPGVDRVVAEAVDAP-AGAELVAFLTPADAP--DDAALRAYAEPRLTAAMRPARVLRLAELPV 485
                    8********************99.***********7554..35**************************97 PP

>> Chlorosome_CsmC  Chlorosome envelope protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.49   1.8e+03      21      44 ..     181     204 ..     174     213 .. 0.82
   2 ?    9.7   0.2   0.00023      0.81      40     108 ..     851     919 ..     824     933 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.49
  Chlorosome_CsmC  21 laflaeavlltGqsavvgglelaG 44 
                      + f++ ++ ltG  a v +l++a 
       KIR61546.1 181 VEFVTGCAALTGADASVRSLGIAS 204
                      679999999********9999986 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00023
  Chlorosome_CsmC  40 lelaGsvvetvagtvgslidatGiskllgstsgvvgetidrvaitvkdvsraaGelysdavknvenvtd 108
                      l  +G ++  ++g  + ++ a    + l+  ++vvg  id v + v+ ++ +  el    + +++++t 
       KIR61546.1 851 LAGFGELLSRLTGGDDHVVGAIVADRRLAAFDDVVGFFIDTVPVRVRTAGASFAELVDRCAAELHDATA 919
                      333689**************************************************9999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 7337.25
//
Query:       KIR61547.1  [L=317]
Description: SyrP [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-42  146.4   0.3    1.7e-42  146.1   0.3    1.0  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.024   14.4   0.0    1.4  1  TOM6p     Mitochondrial import receptor subunit TOM6 homolog


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1   0.3   1.9e-46   1.7e-42      15     267 ..      15     304 ..       5     305 .. 0.87

  Alignments for each domain:
  == domain 1  score: 146.1 bits;  conditional E-value: 1.9e-46
        TauD  15 dlsdleslddelkeelrellaeygvvvfrgfpl.speqqlefarrfGplygtpgrgtntkygevldvssvyesadianlayttllwHtDlsylesppgi 112
                 d+++l +l  + ++elr++l ++g ++frgf++   + + ++ r++    g+p  +t++  ++  ++  vy+s d ++  +++ ++H+++sy+ ++p +
  KIR61547.1  15 DGRALTDLIGARRAELRAALVDHGGLLFRGFDVgGVDGFDAVVRAL---AGEPLVYTERSSPRHAIKGRVYTSTDYPP--DEEIFLHNENSYQARWPLT 108
                 4555556777789*******************************98...55555556666666666556666666666..555667************* PP

        TauD 113 qlLhcleapatGGetpfvDgraaynaLpeelpell..egltavrvyyhyrg...............................gglrteqelpavdkhpr 178
                 ++++c+++p t G+tp++D r++y+ ++++ +e++  ++++ vr+++ ++g                               +glrt+ ++++v+ +p 
  KIR61547.1 109 LFFWCVTPPDTLGATPLADVRRVYELIDPAVREEFvrRRWMLVRNFHADFGtrwqdvfntddraeveayaaanrislewvgaDGLRTRAVREPVHYRPG 207
                 *************************************************************************************************** PP

        TauD 179 tghpvvrthp............vltgrkallvnp...pfatrieglgtpeskelldaleelledpeftyrfqwqeGdlvifdNrrvlHgrtafdegeeR 262
                 +  p +++h             + +g  a +  p   p +t++ g+g ++++++ld+l+++++  + ++rf+ q++d++++dN++ +H+r++f +g +R
  KIR61547.1 208 SDTPRWFNHAtffhlstlpqeyQ-EGLLAMFG-PdglPSNTYY-GDGGEIPADVLDHLRAAYR--AASVRFDYQRDDVLVVDNMTAAHAREPF-TG-PR 299
                 **********8888877754322.33333333.2567******.******************9..****************************.99.99 PP

        TauD 263 hllrc 267
                 ++ ++
  KIR61547.1 300 KIAVA 304
                 87665 PP

>> TOM6p  Mitochondrial import receptor subunit TOM6 homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.7e-06     0.024      17      47 ..     251     281 ..     244     290 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.7e-06
       TOM6p  17 tpeipdnvgdwlrsvyrfaadrndfrrnlll 47 
                   eip +v d lr++yr a+ r d++r+ +l
  KIR61547.1 251 GGEIPADVLDHLRAAYRAASVRFDYQRDDVL 281
                 569***********************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2249.71
//
Query:       KIR61548.1  [L=62]
Description: antibiotic synthesis protein MbtH [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-20   71.6   0.0    3.3e-20   71.3   0.0    1.2  1  MbtH      MbtH-like protein


Domain annotation for each model (and alignments):
>> MbtH  MbtH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.0   1.8e-24   3.3e-20       9      52 ..       3      46 ..       1      47 [. 0.96

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 1.8e-24
                SSEEEEEEETT--EEEEETTS---TTEEEEEEEEEHHHHHHHHH CS
        MbtH  9 dgtflVLvNdeeqySlWPafaavPaGWrvvggpgsreeClayie 52
                +++flV+ NdeeqyS+W a++++PaGW+++g++g+r eCla+i+
  KIR61548.1  3 ETRFLVVRNDEEQYSIWSADRELPAGWHDTGFAGTRSECLAHID 46
                689****************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 443.88
//
Query:       KIR61549.1  [L=1040]
Description: peptide synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-89  297.9   0.1    1.5e-88  297.3   0.1    1.3  1  AMP-binding    AMP-binding enzyme
    2.6e-79  267.1   0.0    7.9e-79  265.5   0.0    1.7  1  Condensation   Condensation domain
    5.4e-11   42.7   0.1    2.3e-10   40.7   0.0    2.1  2  PP-binding     Phosphopantetheine attachment site
    3.4e-09   37.6   4.1    4.2e-09   37.2   0.1    3.2  2  AMP-binding_C  AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
       0.16   10.4   0.0       0.23   10.0   0.0    1.1  1  AATase         Alcohol acetyltransferase


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.3   0.1   4.1e-92   1.5e-88       2     423 .]     455     842 ..     454     842 .. 0.87

  Alignments for each domain:
  == domain 1  score: 297.3 bits;  conditional E-value: 4.1e-92
                  HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE CS
  AMP-binding   2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli 99 
                  ++qaa tp ++alv+  +g  lTY+el++++nrlA+ L ++G+++++rVa++lp+s++++va+la+lk Ga++vp++++++a+++ay+l+d+e+ +++
   KIR61549.1 455 QRQAAATPHATALVS--DGVELTYAELNAAANRLARLLVARGAGPETRVALALPRSADLLVAVLAVLKSGAAYVPVDTGYPAARIAYLLDDAEPALVL 550
                  89*************..9*********************99********************************************************* PP

                  ETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCS CS
  AMP-binding 100 atvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrf 197
                   +         ++++a+  ++   +vld + +++    ++++ +++     +++++l+p+++ay++YTSG+TG+PKGV+++hr+++a +a++  + + 
   KIR61549.1 551 -A---------AADTAA-LVPGDALVLDPGTAADL---DAADLTDA-----DRVAPLRPEHPAYVLYTSGSTGRPKGVVVEHRAVAAYLAWAR-DAYP 628
                  .2.........223333.35666788996555444...33333332.....245579****************************99988863.3334 PP

                  CCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-E CS
  AMP-binding 198 klkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggepl 295
                  +l    + l   p+++++ + ++ll++l++G+tv l+  d++       ++ +  k+ ++ ++P+ l  l ++           ls    +++gge+l
   KIR61549.1 629 GL--AGTALLHSPVSFDLTV-TGLLGPLTAGGTVRLAAIDEP-------AARAGGKPAFLKVTPSHLPLLDDA-----------LSPTADLVIGGEAL 705
                  43..56789**********8.***************998877.......2445689***********999443...........444445578***** PP

                  BHHHHHHHHHHHTC.EEEEEEEEGGGSSECEE...CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHE CS
  AMP-binding 296 spellrffralfge.evlegYGlTEttgvvtv...lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeaf 389
                    e l ++ra  ++ +v + YG+TE+t+ ++    +p +e  + +  +G+p +++++ ++D + + pvp+g+ Gel+v g ++++gYl++p +tae+f
   KIR61549.1 706 TGEQLAAWRAAHPGvAVTNEYGPTEATVGCVAariAPGQELAAGAVPIGTPTWNTRALLLDAA-LHPVPPGVAGELYVAGDQLARGYLRRPGLTAERF 802
                  ************999***************777786767777777779**************9.********************************** PP

                  EE.....T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 390 ds.....e.grwlrTGDlgrldedGyleivgRkkdliklr 423
                   +     + +r++rTGDl+r+++dG+le++gR +d++k+r
   KIR61549.1 803 LPcpygpPgQRMYRTGDLARWRADGTLEYLGRRDDQVKVR 842
                  *8999974567***************************96 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.5   0.0   2.2e-82   7.9e-79       4     454 ..       6     432 ..       3     435 .. 0.93

  Alignments for each domain:
  == domain 1  score: 265.5 bits;  conditional E-value: 2.2e-82
                   EEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHHHH CS
  Condensation   4 eyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeeaie 100
                   + p s aQ+r+w +++l+++s  yn++    + +eld +++ +++++++ rh+aLRt ++ + +g+ vQv++e+++v l ++++s l e e  +   
    KIR61549.1   6 TFPASFAQERVWLANQLDPGSPVYNVSNPWPFPPELDADAVTEVFNQVVARHEALRTHLRSD-DGTLVQVVREHEPVRLPAEDLSGLPEAERLARYH 101
                   5799*******************************************************766.**********************999998777788 PP

                   HHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--.HHHHHHHHHHHHCSHHHHHHHH CS
  Condensation 101 efaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktp.Ykdyaeweqqyleskdlekeea 196
                   ++ ++ ++ p+ L+  pL+ra l+k  ++ + + + vHH ++D+ S  +++ +l+++ ++++ g +   p+ +  Y+d+a w++++l+  +l ++ +
    KIR61549.1 102 AIREELARTPIPLDVPPLWRARLVK-VNEAWSVQFVVHHAVFDAHSAVLFTTELSAFTTAALTGAPAAVPELPIqYADFAAWQRDQLAGPELDRQLD 197
                   88888899*****************.7889**********************************99776666656********************** PP

                   HHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC--S CS
  Condensation 197 YWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdiermvG 293
                   +W+  l+g  +v+ Lp d++rpa+  f +d+++++l++ + +++  la ++ +t ++vll+ +++lLs+++g d +vvg+ ++gR  +  ++   +G
    KIR61549.1 198 FWKAHLAGAPAVTGLPLDRPRPAQLGFAGDEVRFDLPDGLLDAVGALATASAATPYMVLLTGFAALLSRISGDDTVVVGVSTAGRDTA--EVAPLIG 292
                   ********777777**************************************************************************..******* PP

                   S-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE...E..... CS
  Condensation 294 lFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvssveaeeesk 390
                   +Fvn ++lr d+ ++ t +el+ rvk  ll+a++h ++p++++v+ ++ qr+ s +p+f++ ++f            s l+  +l+       ++ +
    KIR61549.1 293 MFVNPVALRCDLTGDPTVAELLGRVKGGLLDAMEHGQTPFQKIVEAVAPQRDPSVQPIFQTALNFIP---------DSGLDPVPLG------TTKDD 374
                   *****************************************************************44.........4555555555......44555 PP

                   SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC-----HHHHH CS
  Condensation 391 ydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqklselkllsdaeke 454
                    +++++a e       ++ Y+t+lFd++t e +  r+++ll +++++p  ++sel ll+dae++
    KIR61549.1 375 LAFDVTAGE------SRLVYRTDLFDRATAEAVVARYVRLLAAAVADPGRRVSELPLLDDAERR 432
                   566666666......5789******************************************987 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         2   7.2e+03      43      66 ..      77     100 ..      71     100 .. 0.80
   2 !   40.7   0.0   6.3e-14   2.3e-10       3      67 .]     950    1012 ..     948    1012 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2
  PP-binding  43 eefgveiplsdlfehptlaelaay 66 
                 e+  v++p +dl  +p  ++la+y
  KIR61549.1  77 EHEPVRLPAEDLSGLPEAERLARY 100
                 5557899*****889999999987 PP

  == domain 2  score: 40.7 bits;  conditional E-value: 6.3e-14
  PP-binding    3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  + e+ a++lgv+   +++ +d+f lG++Sl  ++ +a++++e +v++p++ lf  p +a+laa +
  KIR61549.1  950 VAEVYADILGVEK--VGAADDFFALGGNSLRGMRAMARIRAEVDVDLPMRALFGSPVVADLAAQI 1012
                  667789****985..679********************************************976 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.1   1.2e-12   4.2e-09       1      76 []     850     920 ..     850     920 .. 0.87
   2 ?   -1.2   0.9       1.1   4.1e+03      11      33 ..     934     953 ..     930     964 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.2e-12
                    HHHHHHHSSTTEEEEEEE-----TTS.---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkG.ealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    evEsal++ p+V+ aa+  v+ +  G  alv++ v ++++    ++L a +++el+++ vp ++v +d+lp+t +GK
     KIR61549.1 850 EVESALLARPGVRAAAAA-VRADS-GePALVGYLVGDADP----ATLAADLARELPAHLVPAAFVTLDALPLTPNGK 920
                    8************99977.33332.3399******84344....********************************9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.1
                    TEEEEEEE-----TTS---EEEE CS
  AMP-binding_C  11 aVaeaaVvGvpdevkGealvafV 33 
                    aV++a+V   +d+   ealva V
     KIR61549.1 934 AVDDAYVAPRTDA---EALVAEV 953
                    6899999999999...8888866 PP

>> AATase  Alcohol acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   6.5e-05      0.23     139     181 ..     117     155 ..     101     167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 6.5e-05
      AATase 139 kPlwrlivlpsaddkkkwkkfv.fitdHllfDGisgvnffkdll 181
                  Plwr  +++ ++    w   v f+  H +fD+ s+v+f ++l+
  KIR61549.1 117 PPLWRARLVKVNE---AW--SVqFVVHHAVFDAHSAVLFTTELS 155
                 489*999998853...34..577*****************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1040 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 7139.53
//
Query:       KIR61550.1  [L=1856]
Description: amino acid adenylation protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.8e-108  361.5   0.0   7.8e-108  361.1   0.0    1.1  1  Condensation   Condensation domain
    2.6e-88  296.4   1.0    1.2e-87  294.3   1.0    2.0  1  AMP-binding    AMP-binding enzyme
      1e-20   74.0  44.6      1e-20   74.0  44.6    1.6  2  MFS_1          Major Facilitator Superfamily
    1.6e-13   51.4   0.3      1e-12   48.8   0.1    2.7  2  AMP-binding_C  AMP-binding enzyme C-terminal domain
    2.5e-13   50.2   0.0    1.1e-12   48.1   0.0    2.2  1  PP-binding     Phosphopantetheine attachment site
    4.6e-13   49.8   0.0    1.2e-12   48.5   0.0    1.7  1  Thioesterase   Thioesterase domain
    7.1e-13   47.8  38.7    1.3e-12   47.0  38.7    1.3  1  MFS_3          Transmembrane secretion effector
     0.0021   16.7   2.9     0.0021   16.7   2.9    1.4  2  ATG22          Vacuole effluxer Atg22 like
  ------ inclusion threshold ------
      0.017   14.0   2.5      0.042   12.7   2.5    1.6  1  MFS_1_like     MFS_1 like family


Domain annotation for each model (and alignments):
>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.1   0.0  3.9e-111  7.8e-108       4     456 ..      40     476 ..      38     477 .. 0.95

  Alignments for each domain:
  == domain 1  score: 361.1 bits;  conditional E-value: 3.9e-111
                   EEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHHHH CS
  Condensation   4 eyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeeaie 100
                   ++pls aQ+r+wf+ ++ +++ ay++++ l+++g ld+ +l+ al +l+ rh++LRt+f  +++g+p  v++e+ ev+l v+e++  ++++    ++
    KIR61550.1  40 QVPLSYAQERVWFMDQIAPGEAAYHIAVPLRVRGPLDVAALRGALAALTARHESLRTRFPADADGRPTVVVEESVEVPLTVTEAA--DADA----AQ 130
                   589****************************************************************************999999..4554....45 PP

                   HHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHHHHH CS
  Condensation 101 efaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdlekeeaY 197
                   +++++ ++epfdL++gpL+ra l+++a + ++l+ls HHi+ DG+S+ +llrdl++lY    +g e+p+++++ Y d+a+we + l   +   + ++
    KIR61550.1 131 ALVEAASAEPFDLATGPLLRALLIRLAPDDHVLFLSKHHIVGDGWSVDVLLRDLITLY----HGGEPPALPVQ-YGDFAVWEGKELDGPAARGHLDW 222
                   666666678*************************************************....***********.*********************** PP

                   HHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC--SS CS
  Condensation 198 WseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdiermvGl 294
                   W+ +l+g  p l+Lp d +rpa +++++d ++++ld++ +e+l+ l++ +g+tl + llaa+ +lLs+  gq+d++vg  ++gR  +  ++e++vG+
    KIR61550.1 223 WKSRLAGITP-LELPLDAPRPATQTYRGDFVEFQLDPAETERLNALTRTSGATLFMTLLAAYQVLLSRHAGQEDFAVGASVAGRSVP--ELENVVGM 316
                   *******555.****************************************************************************..******** PP

                   -EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE...E.....S CS
  Condensation 295 FvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvssveaeeesky 391
                   F+n+lPlr +++++ tf+el++r+++ +l+ ++h ++p+ ++v++l l+r+ srsp+f+++f+++ny +    +  s+ ++  ++ +++e  + + +
    KIR61550.1 317 FINMLPLRAELAGDPTFTELLERTRRGVLDGFEHADVPFAKVVHELGLPRDVSRSPVFQAMFVLQNYEMG-RFTGVSDAADVRFEWTPME-LRATRF 411
                   ******************************************************************7765.5566666667777766666.8999** PP

                   SEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC-----HHHHHHH CS
  Condensation 392 dlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqklselkllsdaekekL 456
                   d++l+a+et+++l  k+ +nt+lF ++t+er+++r+++ll +v++ p++++s l ++++ae+e L
    KIR61550.1 412 DFELHAVETTEGLWGKLVFNTDLFTRATVERIARRWTTLLRAVVAAPDTPVSALPMVDPAERELL 476
                   *************************************************************9987 PP

>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.3   1.0     6e-91   1.2e-87       1     422 [.     496     923 ..     496     924 .. 0.86

  Alignments for each domain:
  == domain 1  score: 294.3 bits;  conditional E-value: 6e-91
                  HHHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEE CS
  AMP-binding   1 leeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvl 98 
                  +e++aa tpd+val++  eg+ +TY+ l++++nr+A+ Lr++Gv++++ V++++++s+e+v+ ll++lkaG+++ pl+p+++a++l+++++d+ a v+
   KIR61550.1 496 FEARAAATPDAVALTF--EGRPVTYAGLNAAANRVAHRLRAAGVGPETLVGVCAERSVELVAGLLGVLKAGGAYLPLDPEYPADRLSFMVTDAAAPVV 591
                  7899**********99..**********************99******************************************************** PP

                  EETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHC CS
  AMP-binding  99 iatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletr 196
                  +  v+++l    +++ +  ++ ++v+ ld+        + +++++      + +++++ p +lay+iYTSG+TG+PKGV  +hr +v+ +++ k +++
   KIR61550.1 592 L--VQEHL----RDVLP--DTGATVLALDDT-------ATWADQPTT----D-PAPTAGPGNLAYVIYTSGSTGRPKGVPNTHRGIVNRLHW-K-QET 667
                  *..76554....44444..445567777732.......222222221....1.334689******************************888.4.334 PP

                  SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS- CS
  AMP-binding 197 fklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggep 294
                   +l +dd vl+  p ++++++ +e +++l  Ga++vl+++  + d++ l +l+ ++++t+ + vP++l  +l ++ ++         +lr+v++ ge 
   KIR61550.1 668 YRLAADDAVLQKTPASFDVSV-WEFFWPLREGARLVLAKPGGHKDAGYLRDLLVAERITTAHFVPSMLTVFLGEDGIE------AATGLRQVICSGEE 758
                  56778***************8.*********************99****************************77777......6778********** PP

                  EBHHHHHHHHHHHTC.EEEEEEEEGGGSSECEECHCTTTCTSTTS-B....EE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHH CS
  AMP-binding 295 lspellrffralfge.evlegYGlTEttgvvtvlpleedkkklgsvG....kplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeatae 387
                  l+ + + +f  +++  e++++YG+TE+++ v+ +++ ++ + +g  G     p+++ +++++D + g+++p g+ Gel+++g g+++gY+++p++tae
   KIR61550.1 759 LPLASAVEFTTRLPWcELHNLYGPTEAAIDVS-AWHCDRAALAGLSGvpigGPIANLRLHVLDAA-GNECPVGVAGELHIGGVGLARGYHRRPALTAE 854
                  **99999999999888***************8.6667776776666522226679*********9.9******************************* PP

                  HEEE......T.CCEEEEEEEEEE..ETTS.........................EEEEEEECCCEEEE CS
  AMP-binding 388 afds......e.grwlrTGDlgrl..dedG.........................yleivgRkkdlikl 422
                  +f++      +  r++rTGDl+r+   + G                          +e++gR+++++kl
   KIR61550.1 855 RFVPdpfsgePgARLYRTGDLARWvvSPAGngngdaagnadaagggvaagdgphgVIEFLGRIDHQVKL 923
                  ***78999964456*********8434666557777778888888888888887778888888888887 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0  44.6   5.2e-24     1e-20       3     345 ..    1412    1746 ..    1410    1755 .. 0.78
   2 ?   -3.5   0.8       1.8   3.6e+03     121     163 ..    1789    1806 ..    1759    1829 .. 0.48

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 5.2e-24
       MFS_1    3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllll..fa..sslwlllvlrvl 94  
                   ++++s+++++++++alp++l ++ g s++ +gll +l  +  +++ +++G+++dr++rrr +++++ ++ ++ l+l++  ++    lw++++l +l
  KIR61550.1 1412 AGQLVSTTGSALTAFALPIWLFTQTG-SVANLGLLWALALICGVLMLPIAGAITDRVSRRRiMMIASSAAGSIQLVLAAllWTdnLRLWMIYALVAL 1507
                  57899**************9999999.**********************************66666666666665555555555566999******* PP

       MFS_1   95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv.lfllllpeepperkrkspkeeekg 190 
                  + +++++   a ++++ +++pk+  g a+g+ +++++++++l p++++ l++++   ++ +i  + +++a+  l  ++++ ++   +r++  e+   
  KIR61550.1 1508 SQVAGSFQRIAFQSAVPQLVPKRYLGHAMGVTQLTNGFAMLLMPVFAAGLLAAIELKGILLIDVASYVVAVTtL--AVVRFPDLLGWRPR--ER--- 1597
                  *********************************************************************95533..44444444444443..33... PP

       MFS_1  191 tgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr..rrrlllallll 284 
                      ++++++++ + ++ +  +l + ++++ f   +l+ ++pl l +      + +++l+ al+a++g +l+ l+g          +rr++  l++ 
  KIR61550.1 1598 -LLVAIANGLRYSWQHRGFRlMLGYFAIGNIFLAPALVLTTPLVLSFATATQ-VAQVALAEALGAVAGGVLMSLWG-------GprHRRMIGVLIGN 1685
                  .234455567777777766424555555555555558888888544444444.55555555555555544444444.......33377999999999 PP

       MFS_1  285 llaalglallavtssavllllvlvl.iGfglgfvfpsllalasdlappeeagtasglfntag 345 
                  l +alg++++++   +v++++v ++ + + + +++++++++++  +p++++g++++l++t++
  KIR61550.1 1686 LGTALGCVVIGLD-ASVVVICVGAFwLAMSMTTAQSIYATIVQVKVPQRYHGRVFSLNQTIS 1746
                  9999999999999.777777766664888******************************654 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.8
       MFS_1  121 raigllsagfslGailgpllggllasslgWravfyilaivsll 163 
                  r+ig+++++f+++                          v++ 
  KIR61550.1 1789 RGIGFAYVCFGAAL-------------------------VLVT 1806
                  22222222222222.........................2222 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.1   5.2e-16     1e-12       1      76 []     932    1003 ..     932    1003 .. 0.94
   2 ?   -2.2   0.0       4.3   8.6e+03      26      76 .]    1199    1249 ..    1197    1249 .. 0.68

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 5.2e-16
                     HHHHHHHSSTTEEEEEEE-----TTS.---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C    1 evEsalvshpaVaeaaVvGvpdevkG.ealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                     e+Esal + p+V eaaV+ v++++ G ++l a+ v ++++    ++Lka ++++l++y+vp ++v +d+lp+  +GK
     KIR61550.1  932 EIESALREQPGVTEAAVI-VREDTPGdKRLTAYLVGDAEH----AALKAALKETLPEYMVPTAFVTLDALPLSPNGK 1003
                     8*****************.99999**999******84344....9*******************************9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.3
                     S---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEE.E-.S---B-TTS- CS
  AMP-binding_C   26 GealvafVvlkdgsealeeeLkahvrkelgpyavpkkvv.fv.delpktrsGK 76  
                     G+a+va V  k +  a  +eL+a    ++ p+a+pk +  +  ++l++ rs K
     KIR61550.1 1199 GSAIVAEVARKVE--AAGRELEALYIGAMFPFARPKGLFaAArNRLERLRSNK 1249
                     6777777777522..23489999999999999999966623335677777766 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   5.4e-16   1.1e-12       2      66 ..    1032    1096 ..    1031    1097 .. 0.92

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 5.4e-16
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeef..gveiplsdlfehptlaelaay 66  
                   l  +++evlgv++     d+d+fdlG++S+la++++a+++++   g ++ + dlf+ +t++elaa+
  KIR61550.1 1032 LLAGIWSEVLGVDTLG--IDDDFFDLGGHSMLATQVVAKIRKAEhgGRPVGVMDLFQQRTIRELAAF 1096
                  5889*********866..8**********************9976677*****************97 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0     6e-16   1.2e-12       2     228 ..    1125    1356 ..    1124    1359 .. 0.81

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 6e-16
                    EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST.SHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEET.HHHHHHHHHHHHHHHCT-SE CS
  Thioesterase    2 pLflfppagGsasvfrslasklsdpvvevlavqlpgre.rdepplesieelaaeyaealrqiqpegPyalfGhS.lGgllAfevArqLesqGlav 94  
                    +++++p++gGsa v++ la +l++   +++ ++ pg++   +++   +eel  ++a+++ ++    P +l Gh+  G+++  evAr+ e+ G+++
    KIR61550.1 1125 TYVCVPYGGGSAIVYQPLADALPAG-NALYSLAIPGHDvGLSEEGLPFEELTRRVADEIVERISG-PIVLYGHCgVGSAIVAEVARKVEAAGREL 1217
                    789*********************5.************9777777789***********999976.*******988******************* PP

                    EEEEEESCCCCCCHHCHHCCCHTTHHT.........HHHHHCCTTHHHCCTTTHCCHHHHHHHHHHHHHHHHHTCCS.......-TTSCSEHHCE CS
  Thioesterase   95 kslflidssapseteaqeasrraedee.........fveeltdlggtepeelledeellsellpalradyraleqys.......lrpeaaqklra 173 
                     +l + ++  p+   +++   +a+ +              l+ +g   ++  + d+e    +++++rad ra e y        + +++a+   +
    KIR61550.1 1218 EALYI-GAMFPFA--RPKGLFAAARNRlerlrsnkhYASWLKSMG---VDTDELDPEQADRIISNMRADSRASEEYFtglldagAAKLRAP---I 1303
                    99975.4455544..455555555552222343333444455555...4444555667899***************999876555555555...9 PP

                    EEEEEGSS-CTCCCCCCCHCHCHCTCESCEEEEEESSHCCHHHSHHHHHHHHHHH CS
  Thioesterase  174 tlfngsddklkdldtlelaerweqktsgevsvhvlegdhfylledrleavleiie 228 
                       +gs+d+ +d  t++ ae w+  t+    v  ++++hf+l   r ++++ei++
    KIR61550.1 1304 VSVVGSEDPVTDYFTERYAE-WQFLTDTVGLVVLDQAGHFFLKY-RADELAEIVT 1356
                    9*************999999.*********************96.8888888875 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0  38.7   6.4e-16   1.3e-12      12     359 ..    1407    1753 ..    1402    1782 .. 0.86

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 6.4e-16
       MFS_3   12 FrviWiaslvsnlGtliqevaas.WlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlll 107 
                  F ++ + +lvs +G+ + + a   Wl t+ + s ++  l+ a a +  +l+  +aGa++D ++rR++++++ +   +  ++l+ l  ++ l  w++ 
  KIR61550.1 1407 FVAVTAGQLVSTTGSALTAFALPiWLFTQ-TGSVANLGLLWALALICGVLMLPIAGAITDRVSRRRIMMIASSAAGSIQLVLAALLWTDNLRLWMIY 1502
                  667778899********999985488887.5799999****9999999999999*******************99999999999999********** PP

       MFS_3  108 altlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsylalivallrwkrevrksslprEkll 204 
                  al  l ++  +++  a+q +v++lv++r +  A+ ++ +    a    P  +  l+aa+       +++ sy++ +++l+ ++        prE+ll
  KIR61550.1 1503 ALVALSQVAGSFQRIAFQSAVPQLVPKRYLGHAMGVTQLTNGFAMLLMPVFAAGLLAAIELKGILLIDVASYVVAVTTLAVVRFPDLLGWRPRERLL 1599
                  ************************************************************************************************* PP

       MFS_3  205 ealraglRftaasreikavlvRaalFg.lsasavlaLLPlvardqldgda..lvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvl 298 
                   a+ +glR++   r  + +l   a+   + a a +   Plv     +++   ++    lga+  G +++    +r R++++    vl+  +++Al +
  KIR61550.1 1600 VAIANGLRYSWQHRGFRLMLGYFAIGNiFLAPALVLTTPLVLSFATATQVaqVALAEALGAVAGGVLMSLWGGPRHRRMIG----VLIGNLGTALGC 1692
                  ****************99986655443134555555678887765555440034444555555555555555566666665....78899******* PP

       MFS_3  299 lslalasslwvavlvlllgGaaWitalstlnvavqlavPrWvvgRalavYltvlaGglaaG 359 
                  ++++l  s++v+++    +  +  ta s + + vq+ vP+  +gR++++ +t++  +l  G
  KIR61550.1 1693 VVIGLDASVVVICVGAFWLAMSMTTAQSIYATIVQVKVPQRYHGRVFSLNQTISWSTLPIG 1753
                  *******99999999999999999999*************************998887776 PP

>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.9   1.1e-06    0.0021      76     157 ..    1445    1528 ..    1422    1540 .. 0.84
   2 ?   -4.5   0.6         3   6.1e+03     227     246 ..    1699    1718 ..    1687    1727 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.1e-06
       ATG22   76 tfslsvllqavvvislsglADygnyrknlLlafaligslstilfllvtpkkY..llgavlyivsntcfgaslvllnsfLPllvr 157 
                  + +l+ ++ ++++++ +++ D+ + r+ +++a++ +gs+  +l +l+ +++    + ++l+ +s+++ +   + ++s+ P+lv 
  KIR61550.1 1445 LWALALICGVLMLPIAGAITDRVSRRRIMMIASSAAGSIQLVLAALLWTDNLrlWMIYALVALSQVAGSFQRIAFQSAVPQLVP 1528
                  5699999*******************************9888877765555522777778888888999999**********95 PP

  == domain 2  score: -4.5 bits;  conditional E-value: 3
       ATG22  227 lrlalllvGlwWliftipaa 246 
                   +++++ vG  Wl++++ +a
  KIR61550.1 1699 ASVVVICVGAFWLAMSMTTA 1718
                  57788888888888887765 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.5   2.1e-05     0.042     236     355 ..    1415    1540 ..    1379    1546 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.1e-05
  MFS_1_like  236 ilgmswgiienF.lflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallay.ilrfllyaii....enawlvlpievLhgis 326 
                  ++ ++ +++ +F l ++L     s   lG l+al  +  + ++ +a  ++++++ +++++ia +a   + ++l a++      +w++  + +L+ ++
  KIR61550.1 1415 LVSTTGSALTAFaLPIWLFTQTGSVANLGLLWALALICGVLMLPIAGAITDRVSRRRIMMIASSAAgSIQLVLAALLwtdnLRLWMIYALVALSQVA 1511
                  5566666677775667786666688899*****************************9999987762578888888898666678888888888888 PP

  MFS_1_like  327 fgllwaaaveyvskiapksleatgqglls 355 
                        a  + v +++pk++ +  +g+ +
  KIR61550.1 1512 GSFQRIAFQSAVPQLVPKRYLGHAMGVTQ 1540
                  8888888899999***********99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1856 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.16u 0.38s 00:00:01.54 Elapsed: 00:00:00.60
# Mc/sec: 9356.52
//
Query:       KIR61551.1  [L=434]
Description: hypothetical protein TK50_28655 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.5   1.6       0.17   11.8   0.1    2.2  2  MarR_2    MarR family


Domain annotation for each model (and alignments):
>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   9.5e-06      0.17      11      48 ..      35      79 ..      28      79 .. 0.74
   2 ?   -2.5   0.1      0.27   4.9e+03      38      55 ..     331     348 ..     329     365 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.5e-06
                HHHHHCTTTS.......EEEHHHHHHHHTSSHHHHHHHHHHHHHT CS
      MarR_2 11 LaaLgrrpgr.......dltvgelarrlglsksavsrilkrLvaa 48
                L+aL ++  +       d  +++la++lg+ ++++ ri ++L +a
  KIR61551.1 35 LLALCASAAPdgdaaglDGDAADLADALGIAPARAARIAADLLDA 79
                455555554557666553389*******************99765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.27
                 HHHHHHHHHHTTSEEEEE CS
      MarR_2  38 vsrilkrLvaaGLverrp 55 
                 + r+l+ Lv aG v+ r 
  KIR61551.1 331 AGRVLAPLVGAGDVRARQ 348
                 455556666666555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      139  (0.0077528); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3000.88
//
Query:       KIR61552.1  [L=164]
Description: toxin PemK [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-10   40.7   0.0    3.6e-10   40.2   0.0    1.2  1  PemK_toxin  PemK-like, MazF-like toxin of type II toxin-antit


Domain annotation for each model (and alignments):
>> PemK_toxin  PemK-like, MazF-like toxin of type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0     2e-14   3.6e-10       2     109 ..      59     159 ..      58     161 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 2e-14
                 TTEEEEEEE-S--.TTS--SEEEEEE-S-HHHHCHSEEEEEEEESSSTSSGCSTTEEEE-HH.HCSSSSSSSSEEEECCCEEEEEGGGEEEEEEE--HH CS
  PemK_toxin   2 rGeIvlvdldpsr.gseqgkrRpvvVvsndafnekntvivvpltskdkdkkklpfhvelese.ildlngldkdswvkldqirtvdkarlrkkigklsre 98 
                  Ge+v+ ++ p    + qgk Rpv+Vv +       t+  ++l+s+ +++ +   +  l ++ ++++n   ++swv+ld + t+ ++ +r+    l+r+
  KIR61552.1  59 PGEVVWTWV-PYEdDPRQGKDRPVLVVGRSS----RTLFGLMLSSQGERDGQ-RHWLALGPGaWDRDN---RPSWVRLDRVLTMREDSIRREGAVLDRA 148
                 69*******.966699***********9983....39*********986655.999999999777776...58*****************99999**** PP

                 HHHHHHHHHHH CS
  PemK_toxin  99 dlaevqralak 109
                 ++++v +al++
  KIR61552.1 149 RFDRVGQALRA 159
                 ********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1140.77
//
Query:       KIR61553.1  [L=216]
Description: diguanylate cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-37  127.7   0.0    4.5e-37  127.3   0.0    1.2  1  GGDEF     Diguanylate cyclase, GGDEF domain
  ------ inclusion threshold ------
      0.051   13.4   0.5      0.087   12.6   0.5    1.4  1  LapA_dom  Lipopolysaccharide assembly protein A domain
       0.22   11.6   1.1       0.56   10.3   1.1    1.8  1  IGF2_C    Insulin-like growth factor II E-peptide


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   0.0   7.5e-41   4.5e-37       1     160 [.      48     201 ..      48     202 .. 0.93

  Alignments for each domain:
  == domain 1  score: 127.3 bits;  conditional E-value: 7.5e-41
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 a hD+lTgLpNRr++ +  +++l + +  +++l+ ++ldld+Fk++nd+yGh++GD+vL +va+rL+ ++  + lvaRlggdeFa ll   + +  + +
  KIR61553.1  48 ASHDPLTGLPNRRAFFRLAATLLTDTA--GQPLIAIVLDLDDFKQVNDRYGHAAGDQVLVSVAERLAAFAG-DNLVARLGGDEFAGLLVTPTVD-RRWI 142
                 68*********************9994..69************************************9986.57***********999988875.7888 PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSS CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagrn 160
                 +   rrl + l+ p+ l+g +l vt+s+G a ++    ++l e l++Ad a+y+aK+ g++
  KIR61553.1 143 EHASRRLCESLAAPIPLGGLSLRVTASVGLAPVT--CPTQLTEALDRADAAMYRAKSVGTS 201
                 999999***************************5..889999**************98865 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5   1.5e-05     0.087      27      63 ..       7      41 ..       5      42 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.5e-05
    LapA_dom 27 fgiGa.llgwllslwsylrlrrelrrlkkkikklekel 63
                ++ G+  +g l+s+w   +lrr++  ++ +i++l++el
  KIR61553.1  7 IASGIsAAGALVSAW---QLRRRAMLAEAEIEHLQAEL 41
                566776789999999...******************98 PP

>> IGF2_C  Insulin-like growth factor II E-peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.1   9.3e-05      0.56      32      55 ..      37      60 ..      16      61 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.3e-05
      IGF2_C 32 qaekleaseeakrHrpLisLpskd 55
                +  +l a++ a +H pL+ Lp+++
  KIR61553.1 37 LQAELAAERHAASHDPLTGLPNRR 60
                4457999**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1748.24
//
Query:       KIR61554.1  [L=79]
Description: regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-17   63.5   0.0    1.6e-17   63.2   0.0    1.1  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   9.2e-22   1.6e-17       2      54 .]      17      70 ..      16      70 .. 0.94

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 9.2e-22
      DUF397  2 tWrKSsySgggggnCVEvaalpd.a.vavRDSkdpdgpvLtftpaewaaFlagvk 54
                tW KS++S+++g nCVE+a+lp+ a +avR+S+ pdgp+L++t +e+aaF+ g++
  KIR61554.1 17 TWMKSRRSNPSG-NCVELAELPGgAgIAVRNSRYPDGPALIYTIDEIAAFVLGAR 70
                8**********9.7*********96799***********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 615.56
//
Query:       KIR61555.1  [L=282]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     5e-109  363.9   0.6   5.6e-109  363.8   0.6    1.0  1  Methyltransf_19  S-adenosyl methyltransferase
    0.00053   19.8   0.0      0.001   18.9   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.018   15.7   0.0      0.047   14.4   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
       0.11   13.2   0.0       0.19   12.5   0.0    1.4  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_19  S-adenosyl methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.8   0.6  1.3e-112  5.6e-109       3     268 .]      14     282 .]      12     282 .] 0.96

  Alignments for each domain:
  == domain 1  score: 363.8 bits;  conditional E-value: 1.3e-112
  Methyltransf_19   3 easrridtsrphsaRvydylLGGkdnypvDreaaeallkalpelvkvaranRaflrRavrvlaeeaGirqflDiGtGlPtednvHqvaqrvaPe 96 
                      + s+ridts++h+aR y+ylLGGkdn+++Dr+ ++a+++a+p+++++a +nR+fl+R+v  la+eaG+rqflDiGtG+Pt+dn+H+vaq+  P+
       KIR61555.1  14 HPSDRIDTSVAHPARRYNYLLGGKDNFQADRDSGDAMAAAFPTIRTAALENRRFLKRTVGYLAREAGVRQFLDIGTGIPTADNTHEVAQAADPQ 107
                      5789****************************************************************************************** PP

  Methyltransf_19  97 sRvvYvDnDPivlaharallestpeGatdyieaDlrdpeeilespearevlDldrPvAlllvailhfveDeedaaaivrelvdalpaGsllvls 190
                      +RvvYvDnDPivlaharall+s+peGat+yi+aDlrdpe+il++p++ +++Dl +PvAl+lvailhf++D +d++a+vr+l dalp+Gs+l+ s
       KIR61555.1 108 ARVVYVDNDPIVLAHARALLTSSPEGATAYIDADLRDPEKILRHPDLLRTIDLGQPVALMLVAILHFLPDPDDPYAVVRRLLDALPPGSYLAAS 201
                      ********************************************************************************************** PP

  Methyltransf_19 191 hltedlnpeevekvekvykea...aaplrlRsrkeverffdglelvePGlvevteWrpdeeaeeeeteeeisvyagvarka 268
                      h+t d+ pe+v + ++v +++   +  + lRsr+e++ ff glelv+PG+ ++++Wr ++e + +++  ++s+y++vark+
       KIR61555.1 202 HATYDHLPEQVAQESRVATRTgssRDVISLRSREEFAGFFAGLELVDPGIASIAQWRAEREPQPRPSVVDVSMYGAVARKP 282
                      **********9887777776622266789**************************************************96 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.2e-07     0.001       6     128 ..      83     218 ..      80     239 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.2e-07
  Methyltransf_31   6 rvlDlGCG..tGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieelekl..led..ekfDl.....ilsnevlnala 88 
                      ++lD+G+G  t + t+e a+ + p+a+vv +D+++ ++ +Ar+ + +          +d  + ek     d  +++Dl     ++  ++l+ l+
       KIR61555.1  83 QFLDIGTGipTADNTHEVAQAADPQARVVYVDNDPIVLAHARALLTSSPEGATAYIDADLRDPEKIlrHPDllRTIDLgqpvaLMLVAILHFLP 176
                      689*****99999*******999********************777554443333335555533221233477888888887755557889999 PP

  Methyltransf_31  89 dpdkileeiervlk..pggilliedprllaelpakveeeska 128
                      dpd+ +  + r+l   p g +l++++ + + lp++v +es++
       KIR61555.1 177 DPDDPYAVVRRLLDalPPGSYLAASHATYDHLPEQVAQESRV 218
                      9999999777776444666666677777*********99984 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     1e-05     0.047       2      59 ..      85     146 ..      84     195 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
                      EEET-T..TSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBS CS
  Methyltransf_25   2 LdlGcG..tGrltlalakrl.gkakvtgvDiseemleaareraeeegl.nvefvqgdaedlp 59 
                      Ld+G+G  t ++t ++a++  ++a+v+ vD ++  l++ar+ + ++      ++ +d++d +
       KIR61555.1  85 LDIGTGipTADNTHEVAQAAdPQARVVYVDNDPIVLAHARALLTSSPEgATAYIDADLRDPE 146
                      89999966789********9769*******************98753357777888887743 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.3e-05      0.19       1      96 [.      85     195 ..      85     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.3e-05
  Methyltransf_12   1 LeiGcG..tGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg....ssfDl....vvas.nvlhhl... 79 
                      L+iG+G  t++++++++++  p++++++vD +p ++++a++ l +  +  ++ ++ + +d ++         + Dl     +++   lh l   
       KIR61555.1  85 LDIGTGipTADNTHEVAQAAdPQARVVYVDNDPIVLAHARALLTSSPEGATAYIDADLRDPEKILRHpdllRTIDLgqpvALMLvAILHFLpdp 178
                      788888667899999999999***************9999999999999999999998887665555899966666666677776888888666 PP

  Methyltransf_12  80 kdirevldnirklLkpg 96 
                      +d+ +v++++ ++L pg
       KIR61555.1 179 DDPYAVVRRLLDALPPG 195
                      66666777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2051.79
//
Query:       KIR61556.1  [L=286]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-22   79.9   6.5      2e-22   79.9   6.5    1.9  2  SNARE_assoc  SNARE associated Golgi protein
  ------ inclusion threshold ------
       0.59    9.6   2.9          1    8.8   2.9    1.3  1  DUF1129      Protein of unknown function (DUF1129)
        2.3    7.9  12.7       0.87    9.3   1.2    2.2  2  Yip1         Yip1 domain
        4.7    7.2   7.5         12    5.8   0.9    2.5  2  RseC_MucC    Positive regulator of sigma(E), RseC/MucC
        8.9    6.5   5.7         34    4.7   0.7    2.2  2  DUF4381      Domain of unknown function (DUF4381)


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   6.5   5.7e-26     2e-22       1     120 []      54     182 ..      54     182 .. 0.89
   2 ?   -0.1   0.0      0.35   1.2e+03      17      47 ..     193     223 ..     188     233 .. 0.70

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 5.7e-26
  SNARE_assoc   1 lPsevllvaaGvlf.....glllgtlvtslgallGaslayllgrylgr.....kalrrkllsekrvkalerlverygflallllrllpivPrdlvnyv 88 
                  +Psev+l +aG+++     +l+ ++  t lg+++Ga+  y++g+ lgr      a++  l++ + v++ e+++ r+g++a++++r++p++ r+l++++
   KIR61556.1  54 IPSEVILPLAGFVAsqgrmSLVGAIGWTTLGSVVGALALYWIGAMLGRdrmraIAAKLPLVKLEDVDRTEAWFLRHGVKAVFFGRMIPVF-RSLISIP 150
                  7*************998777888************************965543333334556666666********************98.******* PP

  SNARE_assoc  89 aGltrvsfkrFflatfiGsipwalvyaylGsl 120
                  aG+ r+++ +F+l+t +Gs++w++v++++G+l
   KIR61556.1 151 AGVERMPVLTFLLYTTLGSLIWNTVFVMAGYL 182
                  ******************************95 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.35
  SNARE_assoc  17 llgtlvtslgallGaslayllgrylgrkalr 47 
                  ++gt+  ++ a+ +  +a++++ ++ r+++ 
   KIR61556.1 193 YVGTFQNVVIAVSALAVAWFVATRVRRSRAA 223
                  5677777777888888888888877774433 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.9   0.00028         1     121     199 ..     134     215 ..     127     219 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00028
     DUF1129 121 lvgGlamvlvyrlltrekkkkkrpplwkrllilllllvvwlvlftlvallp....aviNpvLpplvliiigviafvvryylkk 199
                 + +G ++ ++  l++  +   +r p++  ll+++l  ++w  +f++++ l     +v+   +  + +++i+v a++v +++  
  KIR61556.1 134 VFFGRMIPVFRSLISI-PAGVERMPVLTFLLYTTLGSLIWNTVFVMAGYLLgenwHVVESYVGTFQNVVIAVSALAVAWFVAT 215
                 5566666666666665.77889*************************99652222567777888999*************865 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.2   0.00024      0.87      63      93 ..      71     101 ..      35     108 .. 0.77
   2 ?    3.7   4.4     0.013        46      61     117 ..     157     213 ..     133     220 .. 0.49

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00024
        Yip1  63 lgaiiggylglllgllllalllhliakllgg 93 
                  ++++g++ ++ lg ++ al+l++i+ +lg 
  KIR61556.1  71 RMSLVGAIGWTTLGSVVGALALYWIGAMLGR 101
                 345888888889**************99995 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.013
        Yip1  61 sllgaiiggylglllgllllalllhliakllggkgsfkqtlsvvgyallPlilgali 117
                  +l+ ++++ lg+l++  ++ ++ +l+++      s+  t++ v+ a  +l++++++
  KIR61556.1 157 PVLTFLLYTTLGSLIWNTVFVMAGYLLGENWHVVESYVGTFQNVVIAVSALAVAWFV 213
                 333333333333333333333333333333334444444444444444444444444 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.8     0.009        32      72     116 ..      59     101 ..      58     112 .. 0.69
   2 ?    5.8   0.9    0.0034        12      76     120 ..     175     223 ..     155     229 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.009
   RseC_MucC  72 llPllllilgallgsallgssellaalgallglvlgflivrllsk 116
                 +lPl++++++   +s++  +  +++ lg+++g+++ ++i  +l +
  KIR61556.1  59 ILPLAGFVASQGRMSLV--GAIGWTTLGSVVGALALYWIGAMLGR 101
                 68999999999999999..46666666666666666655555444 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0034
   RseC_MucC  76 lllilgallgsall....gssellaalgallglvlgflivrllskrlkk 120
                 +++++g+llg+ +       +++  +++a+ +l+++++++++++++ ++
  KIR61556.1 175 VFVMAGYLLGENWHvvesYVGTFQNVVIAVSALAVAWFVATRVRRSRAA 223
                 6788999999999877776777777888888888888888777776544 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.7    0.0094        34      18      59 ..      77     117 ..      73     129 .. 0.67
   2 ?    4.2   0.4     0.013        47      24      51 ..     201     227 ..     194     230 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0094
     DUF4381  18 apGwwlllaalllllllvlalwllrrrkrnrreAlreLaalr 59 
                 a+Gw +l  ++ +l+l +++++l r r r   +A   L +l+
  KIR61556.1  77 AIGWTTLGSVVGALALYWIGAMLGRDRMR-AIAAKLPLVKLE 117
                 89*99999555558888888888876665.556665566555 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.013
     DUF4381  24 llaalllllllvlalwllrrrkrnrreA 51 
                 ++ a+ +l+++++++ ++rr +++rr+A
  KIR61556.1 201 VI-AVSALAVAWFVATRVRRSRAARRDA 227
                 33.4555777777778888888889987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2511.64
//
Query:       KIR61557.1  [L=200]
Description: hypothetical protein TK50_28695 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1731.53
//
Query:       KIR61558.1  [L=323]
Description: pirin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-31  106.1   0.1    1.4e-30  105.5   0.1    1.3  1  Pirin     Pirin
    1.3e-20   73.7   0.0    5.3e-20   71.7   0.0    1.8  2  Pirin_C   Pirin C-terminal cupin domain
  ------ inclusion threshold ------
      0.074   12.8   0.4       0.16   11.7   0.4    1.5  1  Cupin_2   Cupin domain


Domain annotation for each model (and alignments):
>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.1   2.3e-34   1.4e-30       4     108 .]      39     139 ..      36     139 .. 0.93

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 2.3e-34
                 ECCGTCC.TTCCEECTCEECCEEESS.S.ETTEEEET-EEEEEEEBSEEEEEEEECSEEEEEETTS-EEEEETT-EEEEE-TT-EEEEEEE-SS.SS-E CS
       Pirin   4 vrralgkaaelqsvdpFlfldefdpaelevgeedvigagfpphphrgletvtylleGevehrDslGnkgvirpGdvqwmtAgsGivhsEmneee.eesl 101
                 vrr l++  ++++v  + f+d+f+p++++       g+++pphph gl+tvt+ll+Ge+ hrDslGn + irpG++++mt+g+Gi+hsE+++++    +
  KIR61558.1  39 VRRLLPQ-RQRRMVGAWCFVDHFGPDDVAQRP----GMEVPPHPHTGLQTVTWLLDGEIVHRDSLGNVQPIRPGQLNVMTSGHGIAHSERSPAQhPPVM 132
                 6677777.9999****************8888....9*****************************************************999857789 PP

                 EEEEEEE CS
       Pirin 102 eglqlWv 108
                 +g+qlWv
  KIR61558.1 133 HGVQLWV 139
                 ******8 PP

>> Pirin_C  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.31   1.9e+03      17      57 ..      78     121 ..      64     131 .. 0.69
   2 !   71.7   0.0   8.9e-24   5.3e-20       7     102 ..     196     289 ..     190     292 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.31
                 -TT-EEEEEEEES-EEESSTT...EEE-TTEEEEE-SSSEEEEE CS
     Pirin_C  17 pegleaavyvleGelevgger...seieeeqlavlgdgdslvvk 57 
                   gl+++   l+Ge+   ++    ++i+++ql v+++g+ +  +
  KIR61558.1  78 HTGLQTVTWLLDGEIVHRDSLgnvQPIRPGQLNVMTSGHGIAHS 121
                 55666777778888755444466689999999999988887655 PP

  == domain 2  score: 71.7 bits;  conditional E-value: 8.9e-24
                 -TT-EEEEE--TT-EEEEEEEES-EEESSTTEEE-TTEEEEE-.SSSEEEEE--SS-EEEEEEEE----S--EEETTEEESSHHHHHHHHHHHHTT- CS
     Pirin_C   7 eagaelelplpegleaavyvleGelevggerseieeeqlavlg.dgdslvvkaeekgarvlLlaGePlgepvvqyGpfVmntkeeieqafedyregr 102
                   +a  +lpl+ ++e+a++ ++G +evg+    +e++ l++lg  ++sl++ a   g+r+lLl+GeP++ep v++++fV  + eei+ a ed+ +gr
  KIR61558.1 196 RGAAPARLPLRRDFEYALLAMSGAAEVGDVS--VEPGALLYLGlGRESLTLAAA-PGSRLLLLGGEPFEEPLVMWWNFVGRSHEEIAAAREDWTAGR 289
                 55677889999******************95..**********88889999998.***************************************995 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   2.7e-05      0.16       7      55 ..      69     120 ..      65     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.7e-05
                 TTEEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT..-EE CS
     Cupin_2   7 pGesapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpag..tpH 55 
                 pG + p+h H+g + +   l+Ge++ +   g+++++++G++ +  +g    H
  KIR61558.1  69 PGMEVPPHPHTGLQTVTWLLDGEIVHRdSLGNVQPIRPGQLNVMTSGhgIAH 120
                 88899******************998856699*******9988888744555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       188  (0.0104858); expected 358.6 (0.02)
Passed bias filter:                      166  (0.00925874); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2297.73
//
Query:       KIR61559.1  [L=220]
Description: hypothetical protein TK50_28710 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1790.84
//
Query:       KIR61560.1  [L=215]
Description: hypothetical protein TK50_28715 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-54  184.1   0.1    2.2e-54  183.8   0.1    1.1  1  DUF1345   Protein of unknown function (DUF1345)


Domain annotation for each model (and alignments):
>> DUF1345  Protein of unknown function (DUF1345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.8   0.1   1.2e-58   2.2e-54       4     172 ..      37     204 ..      34     205 .. 0.95

  Alignments for each domain:
  == domain 1  score: 183.8 bits;  conditional E-value: 1.2e-58
     DUF1345   4 rlligwdlaalvylvlvllvllradaeelrkraeredesrvlilllvllaalaslvaivlllasakaekpae.kllhlalavatvvlsWllvhtvfalh 101
                   l+gwd+a+l++lvlv+++l+++d e + + a red+sr++  +l+l+a+lasl+a+++ l  a+++ p   + +  +l+v++v+lsWl+vhtv +++
  KIR61560.1  37 GPLVGWDAATLSWLVLVWRTLWPLDGEGTARLAGREDPSRAVRDVLLLVACLASLLAVAVVLLYAHSAPPGPrRDAYGGLGVVSVLLSWLVVHTVHTAR 135
                 579********************************************************9998887776654268999********************* PP

     DUF1345 102 YahlyyekkeeeggldFpgteepdywDFlYfsftigmtfqtsDvtvtsremRrlvlvhsllsFfFntvilA 172
                 Ya+ yy  ++++gg+ F ++e+p+y+DF+Y++ft+gmtfq+sD+++ts+emR +vl hslls++F++vi+A
  KIR61560.1 136 YARIYY--TGPDGGVVFHQRERPRYSDFAYLAFTVGMTFQVSDTNLTSNEMRTTVLRHSLLSYLFGAVIIA 204
                 ******..**************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1668.29
//
Query:       KIR61561.1  [L=89]
Description: hypothetical protein TK50_28720 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-14   53.3   1.1    4.9e-14   52.2   1.1    1.6  1  DUF2795   Protein of unknown function (DUF2795)


Domain annotation for each model (and alignments):
>> DUF2795  Protein of unknown function (DUF2795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   1.1   2.8e-18   4.9e-14       1      44 []      11      54 ..      11      54 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 2.8e-18
     DUF2795  1 LkgadyPatKdeLveyArrngApdevleaLeaLPdreYespaeV 44
                L+ +dyPa+K ++v+ A+r gAp++vl+aL+aLP  +Y++ +eV
  KIR61561.1 11 LSSLDYPADKADVVREAEREGAPPDVLRALRALPPVDYANGTEV 54
                899*************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 711.41
//
Query:       KIR61562.1  [L=137]
Description: hypothetical protein TK50_28725 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-32  110.9   5.0    4.9e-32  110.8   5.0    1.0  1  DUF2267          Uncharacterized conserved protein (DUF2267)
    0.00091   19.4   0.0       0.11   12.7   0.0    2.1  2  Bac_DNA_binding  Bacterial DNA-binding protein
  ------ inclusion threshold ------
      0.054   13.6   0.2       0.54   10.5   0.0    2.0  2  HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2


Domain annotation for each model (and alignments):
>> DUF2267  Uncharacterized conserved protein (DUF2267)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   5.0   8.2e-36   4.9e-32       1     122 []       3     122 ..       3     122 .. 0.95

  Alignments for each domain:
  == domain 1  score: 110.8 bits;  conditional E-value: 8.2e-36
                 HHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTTS-HHHHHHHHTTS-HHHHHHHHTT--TTS-----SHHHHHHHHHHTS.....EHHHHHHHHHHHH CS
     DUF2267   1 ydefleevqerlgledreeAeratravLrtLrdrlteeeaadlaaqLPeelrgllrdgwppvepgkrfdreeflervaeelgvdpedaeqaaraVfaal 99 
                 yd+f+++v+ r++++  e+A ++tra+L+tL++rlt++e  dlaaqLP+ l+ +lr   +  e ++rf++ ef++rv +++g d+++a++a+raVf++l
  KIR61562.1   3 YDTFVDQVALRARVP-GERAVELTRATLETLAERLTGGEVLDLAAQLPKPLQLVLRPSPDT-EAADRFGAAEFVARVGQRAGLDERAAREAVRAVFTTL 99 
                 79************9.899************************************999765.44459******************************** PP

                 HHHS-HHHHHHHHHTS-HHHHTT CS
     DUF2267 100 kealsegeiedvaaqLPkdlrel 122
                 +ea+++ge++d+  q+P+d+r++
  KIR61562.1 100 REAVTGGEFDDIVVQMPRDYRDM 122
                 *********************86 PP

>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0054        32       1      43 [.       1      43 [.       1      48 [. 0.90
   2 !   12.7   0.0   1.9e-05      0.11       4      40 ..      71     107 ..      69     114 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0054
                     EEHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHTT-EEE CS
  Bac_DNA_binding  1 mtkkeLieeiaektgltkkdakrvveafldtikeaLkkgekve 43
                     m+   +++++a ++ +  + a ++  a+l+t++e L  ge + 
       KIR61562.1  1 MNYDTFVDQVALRARVPGERAVELTRATLETLAERLTGGEVLD 43
                     777889******************************9998765 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.9e-05
                      HHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHTT- CS
  Bac_DNA_binding   4 keLieeiaektgltkkdakrvveafldtikeaLkkge 40 
                      +e+++++ +++gl ++ a+++v a+++t+ ea+  ge
       KIR61562.1  71 AEFVARVGQRAGLDERAAREAVRAVFTTLREAVTGGE 107
                      699*****************************98776 PP

>> HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.071   4.2e+02       9      44 ..       9      44 ..       7      47 .. 0.86
   2 ?   10.5   0.0     9e-05      0.54       9      40 ..      76     107 ..      74     114 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.071
  HU-CCDC81_euk_2  9 elaaaaglsrdvVescvqetfqalgdllrngknvel 44
                     ++a++a ++ + +    ++t+ +l + l  g+ ++l
       KIR61562.1  9 QVALRARVPGERAVELTRATLETLAERLTGGEVLDL 44
                     588889999999999999999999999999998887 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 9e-05
  HU-CCDC81_euk_2   9 elaaaaglsrdvVescvqetfqalgdllrngk 40 
                       ++++agl+ + ++ +v+++f++l +++  g+
       KIR61562.1  76 RVGQRAGLDERAAREAVRAVFTTLREAVTGGE 107
                      689************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1047.74
//
Query:       KIR61563.1  [L=399]
Description: carnitine dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-84  284.4   0.1    1.6e-84  284.1   0.1    1.0  1  CoA_transf_3  CoA-transferase family III


Domain annotation for each model (and alignments):
>> CoA_transf_3  CoA-transferase family III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.1   0.1     9e-89   1.6e-84       1     368 []      21     375 ..      21     375 .. 0.92

  Alignments for each domain:
  == domain 1  score: 284.1 bits;  conditional E-value: 9e-89
  CoA_transf_3   1 LaGvrVldlsqvlaGplatslLAdlGAeVIkvEppkkgDpaRkvgpseekgesayflavnrnKrsvalDlkseegrellkrLvakADVvieNfrpgv 97 
                   L GvrV++l+ +  Gp+a+++LAdlGA+VI+v++    Dpa   +p        +   +nr++rs+a+Dlks+ gre++++L+  AD +ie frpgv
    KIR61563.1  21 LTGVRVIELAGIGPGPFAAMMLADLGADVIRVDRATDVDPAAFGTP--------HPDLLNRGRRSIAVDLKSAGGREAVRALAGGADALIEGFRPGV 109
                   89*********************************99998876655........557**************************************** PP

  CoA_transf_3  98 lerlglgyeelrainPrLiyasvsgyGqsGpkakrpgyDlvaqaasGlmsltgepdgpPvkvgvplgDi.vtgllaavailaallarertGkGqvid 193
                    erlglg++++ a nPrL+y +++g+Gq+Gp a ++g+D+ + a +G ++  g ++++Pv + + lgD+  +g+++a++++aal+a ++   Gqv+d
    KIR61563.1 110 TERLGLGPADCLAANPRLVYGRMTGWGQDGPLAPYAGHDIDYLALTGALHGVGRAGERPVPPMNLLGDFgGGGMMLALGVVAALYAVRAGAPGQVVD 206
                   *********************************************************************8899************************ PP

  CoA_transf_3 194 vslleaalallapqlleylatgevperqgnrdp..aaapygvyrtkdg.wvaiaaatdkqwaalckalgrpelaedprfatnasrlenraeldaela 287
                   ++ ++++  l    ++     g+ + ++g +    +a++y++y+++dg ++a++a +++++ +l++  g p   +d   +t  +   n  +l+a+ a
    KIR61563.1 207 AAIVDGVSVL-TTMIHSLRGVGRWQDPRGVNLLdgGAPFYDTYECADGrHLAVGALEPRFYDELVRRTGFPLPGDDAPERTDPA---NWPALRAAWA 299
                   *****98855.4455555555555554554444449999********************************8877777777777...89******** PP

  CoA_transf_3 288 ewlaertaaewlellaaagvpaapvntleevlddpqlaarglvvevddpdygevpvvglpvrlsetparvkraaPklGedt 368
                   + +++rt++ew +ll + + ++apv +++e+ ++p+l ar+++ve+  ++     +++  +r+s+tp++++r++P+ Ge+t
    KIR61563.1 300 RLFRTRTRDEWTALLGDSDACVAPVLDWREAPRHPHLTARRVFVEHAGAT-----QPAPAPRFSGTPTALRRPPPHPGEHT 375
                   ********************************************988887.....8888899******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2583.69
//
Query:       KIR61564.1  [L=339]
Description: tellurium resistance protein TerC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-45  155.0  14.7    1.6e-45  155.0  14.7    2.1  3  TerC      Integral membrane protein TerC family


Domain annotation for each model (and alignments):
>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1     0.043   7.8e+02     122     149 ..       7      38 ..       5      52 .. 0.77
   2 !  155.0  14.7     9e-50   1.6e-45       1     180 [.      81     288 ..      81     289 .. 0.94
   3 ?   -3.8   0.2       0.5     9e+03     135     148 ..     305     318 ..     299     321 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.043
        TerC 122 laavait....sdlfivitavilsilvlrfla 149
                 laa a++      l+ v +a +l++lvl fl 
  KIR61564.1   7 LAAGALSsigtPTLWAVTIAGVLALLVLDFLV 38 
                 56666665555678889999999999998875 PP

  == domain 2  score: 155.0 bits;  conditional E-value: 9e-50
        TerC   1 ltlvlleivLsiDNlvviallvkk..lpeeqqkkalllGilgAlvlRillillavallelfdlilligglfLlytavkellekr........le.nklv 88 
                 lt++l+e++Ls+DNl+v++ll +   +p+   +++ll+Gi+gAlvlR+++i+l++a l+ +d+ +l+++++L++tavk+l+++         ++ ++ v
  KIR61564.1  81 LTGYLVEKSLSVDNLFVFMLLLAAfaVPAVLAQRVLLYGIAGALVLRAVFIALGAAALQTLDFAFLLFAVILIATAVKLLRDALsgheqevdINkMRSV 179
                 589*****************999999******************************************************9987877777774446777 PP

        TerC  89 keekkkkkktkst.................llavviqielaDlvfslDSvlaavaitsdlfivitavilsilvlrflakllakllerfptlkylalall 170
                 k  ++ +++ +++                 l +vv+++ ++D+vf++DSv+a+++it+d+++v++ +++++l+lr+l+++l+++l+r+ +l+y+++++l
  KIR61564.1 180 KLLRRFMPVVDEYqgtkmtvrlngrraltpLALVVVAVLATDVVFAVDSVPAVYGITEDPYLVFATNAFALLGLRALYFVLHAALSRLVHLSYGLAIIL 278
                 7777777777777************************************************************************************** PP

        TerC 171 lligvklvle 180
                 ++igvkl l+
  KIR61564.1 279 AFIGVKLCLH 288
                 *******875 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 0.5
        TerC 135 itavilsilvlrfl 148
                  ++vi+++lv+++l
  KIR61564.1 305 SLGVIIGVLVVVTL 318
                 56677777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       960  (0.0535445); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2558.59
//
Query:       KIR61565.1  [L=199]
Description: molybdopterin-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-26   92.3   0.1    3.2e-26   92.0   0.1    1.1  1  Oxidored_molyb  Oxidoreductase molybdopterin binding domain


Domain annotation for each model (and alignments):
>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.1   1.8e-30   3.2e-26       2     172 .]      35     179 ..      34     179 .. 0.95

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 1.8e-30
                     S----.GCCC-EEEEESTCSSEEEEEHHHHHHC-EEEEEEEEE-TTTTHHHHCHH--SS----TTSEEEEEEEEEEHHHHHHHTTB-ETT..EEE CS
  Oxidored_molyb   2 gavpkvdpekwrlevdglvekplslslddLkalpavevtatlqCagnrrkelnkkkvkglqwgagavsnaeWtGvrlrdvLekagvkkpearhvv 96 
                     g++p+v+p+ w+l v+ +   + +++++++ alp+++ t++++C++              +w   +   ++W+Gv+l  +L+ +  +   a ++ 
      KIR61565.1  35 GPTPRVRPDAWELVVTTETGAEHRWTWAEFTALPQETPTVDIHCVT--------------RW---SKLGTTWQGVSLDVLLDGVDTD---AAYAL 109
                     689999****************************************..............7*...8999************988885...78999 PP

                     EEEEEE-TCCTEEEEEEEHHHHCTTT-EEEEEETTEE--CCCTTT-EEE-TTB-GGGSBTTEEEEEEESS---SHH CS
  Oxidored_molyb  97 fegadeeleeskygasiplekaleddvlLAyemngepLppdhGyPlRlvvpglvgarsvKwlkrievsdeesegyw 172
                     ++++       +y++++pl+++    + +++ ++g++Lp +hG P Rl+vp+l+ ++s+Kw++ i++  ++ +g+w
      KIR61565.1 110 VHSYG------GYTTNLPLADLRGGRAWVVHGYDGRDLPAEHGGPARLLVPHLYLWKSAKWVRGIRLGVTDTPGFW 179
                     99875......7***********889*****************************************999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1429.36
//
Query:       KIR61566.1  [L=248]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-13   50.6   0.0    3.4e-13   50.2   0.0    1.2  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    1.2e-10   41.6   0.0    1.9e-10   41.0   0.0    1.2  1  FAD_binding_6  Oxidoreductase FAD-binding domain
  ------ inclusion threshold ------
       0.18   11.9   0.3        3.1    7.9   0.0    2.1  2  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   5.7e-17   3.4e-13       1     108 [.     120     226 ..     120     227 .. 0.91

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 5.7e-17
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTT.EEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpg.rlkvvavvsreeagweggkgrvqdalleellslkkeethv 95 
                    ++agG+G+ P+++++ra+ ++   + +  l+y +rt++d++y +el++ a+  +g  + +v++ +  ++gw+g+  r+  a ++++    + e + 
     KIR61566.1 120 LVAGGSGVVPLMAMVRARRAA-GSRAPFRLIYSARTQADVIYADELRRRARDDRGlDVAYVYT-RAAPDGWRGEPHRIGLADVNTHGWPAELEPLC 213
                    79******************8.999************************99999955555555.99*************99999999878999*** PP

                    EEECSHHHHHHHH CS
  NAD_binding_1  96 yvCGppgMikavr 108
                    yvCGp g+++ v+
     KIR61566.1 214 YVCGPTGFVETVA 226
                    *********9986 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   3.2e-14   1.9e-10       5      97 ..      17     107 ..      14     108 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 3.2e-14
                    EEEEECCTTEEEEEEEESTTTS-----TT-EEEEEEC.ETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHH.HCS-TT-EEEEEEEE-SE CS
  FAD_binding_6   5 tekeevsedtrifrfklpsekqklglpvGqhvflrlk.ikgeaviRsYtpissenekGelellvkvypgGkmsqaL.delkigdtleikGPlGkf 97 
                    +e+++ ++  +++ +++p      g ++Gqhv +rl+  +g +  RsY+ ++ + e  ++ l v+++p+G++s +L d  + gd +e++GP+G +
     KIR61566.1  17 VERRTETPTAQTLVLDVPGWP---GHLPGQHVDVRLTaPDGYQAARSYS-LAGPAEGDRVALTVQRVPDGEVSPYLiDTWATGDPVEVRGPVGGW 107
                    555555666666666666433...4567*********8889********.78888999******************99**************976 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00052       3.1       4      21 ..     118     135 ..     115     155 .. 0.91
   2 ?    2.2   0.1      0.03   1.8e+02     140     153 ..     214     227 ..     212     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00052
                    xxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   4 vllvagGiGitpfisilk 21 
                    vllvagG+G+ p++ +++
     KIR61566.1 118 VLLVAGGSGVVPLMAMVR 135
                    9***********999987 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.03
                    xxxxxxxxxxxxxx RF
  NAD_binding_6 140 fvCGppklvkevkk 153
                    +vCGp+++v++v+ 
     KIR61566.1 214 YVCGPTGFVETVAD 227
                    69*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.56
# Mc/sec: 1330.56
//
Query:       KIR61567.1  [L=90]
Description: hypothetical protein TK50_28750 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0039   17.2   0.0     0.0047   16.9   0.0    1.1  1  HypA           Hydrogenase/urease nickel incorporation, metal
  ------ inclusion threshold ------
       0.15   11.9   1.0         14    5.6   0.1    2.4  2  zinc_ribbon_5  zinc-ribbon domain
       0.31   11.2   2.0        9.1    6.5   0.1    2.2  2  zf-ACC         Acetyl-coA carboxylase zinc finger domain
       0.64    9.8   3.5          7    6.5   0.3    2.2  2  Rubredoxin_2   Rubredoxin metal binding domain


Domain annotation for each model (and alignments):
>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.1e-06    0.0047      61     103 ..      19      70 ..       5      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
                 EEEEEEE--EEEETTTS-EEECHH.HHH.........S-TTTSSS-EEEEESS CS
        HypA  61 eLeieevpvkvrCreCgkefelee.kal.........rCpkCgsadveivsGe 103
                 +++++   ++ rC +Cg+++ ++  + +         rCp+C +  +++v+G 
  KIR61567.1  19 VFAVDVSGATGRCASCGATGPMAGlR-VyshapglvaRCPACAEVMLRLVRGP 70 
                 56788888999**********98743.2366899999***********99995 PP

>> zinc_ribbon_5  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1    0.0048        21      21      32 ..      24      35 ..      17      37 .. 0.83
   2 ?    5.6   0.1    0.0031        14       2       9 ..      53      60 ..      52      68 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0048
  zinc_ribbon_5 21 ksgkkVrCakCa 32
                   +sg   rCa C+
     KIR61567.1 24 VSGATGRCASCG 35
                   6788889****8 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0031
  zinc_ribbon_5  2 iirCpdCd 9 
                   + rCp+C 
     KIR61567.1 53 VARCPACA 60
                   67899994 PP

>> zf-ACC  Acetyl-coA carboxylase zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.4    0.0096        43       3      10 ..      30      37 ..      30      37 .. 0.86
   2 ?    6.5   0.1     0.002       9.1       3      13 ..      55      65 ..      54      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0096
      zf-ACC  3 KCpsCgem 10
                +C sCg++
  KIR61567.1 30 RCASCGAT 37
                6*****85 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.002
      zf-ACC  3 KCpsCgemlyk 13
                +Cp+C e++++
  KIR61567.1 55 RCPACAEVMLR 65
                6******9976 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.3    0.0016         7      15      22 ..      29      36 ..      27      39 .. 0.63
   2 ?    4.1   0.2    0.0084        38      16      21 ..      55      60 ..      50      61 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0016
  Rubredoxin_2 15 GrCpsCgs 22
                  GrC sCg+
    KIR61567.1 29 GRCASCGA 36
                  56666654 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0084
  Rubredoxin_2 16 rCpsCg 21
                  rCp+C 
    KIR61567.1 55 RCPACA 60
                  8****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.54
# Mc/sec: 504.20
//
Query:       KIR61568.1  [L=440]
Description: squalene monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-08   32.3   0.0    1.5e-07   31.0   0.0    1.6  1  FAD_binding_3  FAD binding domain
    0.00016   20.9   0.6      0.019   14.1   0.0    2.2  2  FAD_binding_2  FAD binding domain
    0.00016   21.0   0.0      0.045   13.0   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.008   15.3   0.0      0.014   14.5   0.0    1.3  1  SE             Squalene epoxidase
  ------ inclusion threshold ------
      0.065   13.5   0.1       0.16   12.2   0.1    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
       0.08   13.5   0.0       0.69   10.5   0.0    2.1  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   5.1e-11   1.5e-07       5     319 ..       8     343 ..       5     345 .. 0.70

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 5.1e-11
                    EEE--SHHHHHHHHHHHHTTHHEEEEESSS.SSCCSSS--EEEHHHHHHHHHT..........T-HHHHHHHSEEC.CCCEEEEEEECCCCCEEEE CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlvekrs.ttvvlpradglnqrtmellrql..........Gledrilaegapn.elmgealynelsdtpkara 88 
                    ++ Ga+ aGl++a++Lsea  +v+lv++ +  ++v  r ++ ++r + +l  +          Gl d+++a gap  +l+g++++++         
     KIR61568.1   8 VVLGASMAGLVAARVLSEAYDSVTLVDRDAlPDAVAHRRGVPQSRQLHVLLARgraaldelfdGLSDELHAAGAPLvDLNGQVHWCN-------DG 96 
                    789****************888******98345666677788888888887661111122234566666666665325556666666.......22 PP

                    EHHCHHCST-CEE--HHH..HHHHHHHHHHHHT.EEETCSEEEECC..EECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHH...HHHTGGE CS
  FAD_binding_3  89 dlelesspervtvypqte..leriLvehaeerg.lqvrfktevesl..eqdeegvtaevrdketgeeetvrakYlvGaDGgrStvr...ktlgief 176
                    +l ++ s+++   +++++  ler ++++ e+ + +++r  +e ++l   +d   vt +++  + g+ ++++a+ +v a G  S++    ++lg + 
     KIR61568.1  97 YL-MRRSASDLVGVGVSRplLERTVRARVERLAnVRFRPPAEATALcgSDDRRRVTGVLLTPRGGAAYRLDADLVVDACGRASRSPtwlAALGYPA 191
                    22.356667766666543339*******9999999**99999777644789999***************************997752227899999 PP

                    EEEEEEEEEEEEEEEEEC.-SCCCTTC...........CEEEEECCTTEEEEEECCE..TEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTT CS
  FAD_binding_3 177 egeetvyeagvldvlfda.dlsdivep...........lvlilsaesrgvmviPlen..tlerfyvqvearaekeersekfteeevkarlreivge 258
                    ++e++v     +dv+  +   +  ++p           + + +++  ++  v ++e+  + ++   ++  +++ +++  +++ e + + l ++v  
     KIR61568.1 192 PAEQRV----AVDVTYVTrTYE--RDPrhldgllgaltNAVPGRPRTGI--VAAQEDgrFAVALSGVLGEQPPLDDEGYARFAESLGQPLISQVVR 279
                    999988....444444442222..2223345688777444444444443..333333246666677777888889999999999999999999998 PP

                    SSCEE..EEEEEEEEEEEEEEESSSEE.TTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 259 ktldv..eieevsawtvaqrvaekyrk.grvflaGDAaHihpPtgGqGlNtaiqDavnLawkLa 319
                    ++++v  +  +   + v++r+ +  r  +  ++ GDA     P+ GqG+ +a+     L + La
     KIR61568.1 280 EATPVggPALMRYPASVRRRYERLRRFpDGYLVFGDALCSFNPVYGQGMTVAAGEGLLLRRLLA 343
                    8888865666666677777765544433689999***************999988877777665 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.1    0.0031       9.3       2      30 ..       7      35 ..       6      39 .. 0.92
   2 !   14.1   0.0   6.2e-06     0.019     141     219 ..     113     196 ..      46     203 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0031
                   EEEE--SHHHHHHHHHHHHTTT-EEEEES CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvek 30
                   ++V G+ +AGL+AA  ++ea  +v++v+ 
     KIR61568.1  7 AVVLGASMAGLVAARVLSEAYDSVTLVDR 35
                   69************************986 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 6.2e-06
                    HHHHHHHHH.HHHTCT..EEEEESEEEEEEEECTT..EEEEEEEEETTTTCEEEEEESEEEE-----GG............GSSSB CS
  FAD_binding_2 141 hallarlve.sarkag..vdfqerteadeLivedg..rvtGavvenpesgrevrirakavvlatgGfgr..allkellgaaaeaet 219
                    + ll+r v+ ++++    v+f++ +ea++L   d+  rvtG+ ++ p++g   r+ a+ vv+a+g ++r  ++l  l  +a++++ 
     KIR61568.1 113 RPLLERTVRaRVER-LanVRFRPPAEATALCGSDDrrRVTGVLLT-PRGGAAYRLDADLVVDACGRASRspTWLAALGYPAPAEQR 196
                    33333333303333.247************9987789****9999.9**********************99888887777766655 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.5e-05     0.045       3      41 ..       7      48 ..       5      94 .. 0.79
   2 !    5.9   0.0    0.0021       6.3     185     264 ..     116     203 ..     105     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.5e-05
                 EEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx RF
  Pyr_redox_2  3 vvviGgGpAGlaaaltlaqagakvtlve...legtclnggcl 41
                  vv+G+ +AGl aa+ l++a   vtlv+   l +++ +++ +
   KIR61568.1  7 AVVLGASMAGLVAARVLSEAYDSVTLVDrdaLPDAVAHRRGV 48
                 69*************************765644444454444 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0021
                  HHHHHHHHHHHT.TEEEEESCEEEEEEETTE..EEE..EEETTSCE...EEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTS CS
                  xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx..xxx..xxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 185 lsaaleealeke.Gvevklgtsvkeidgnge..kle..vvledgee...idadlvvvavGvrpstelleeklglelderggivvdefl 264
                  l++++++++e+  +v+++  ++++++ g ++  +++  + +  g     +dadlvv a G+  ++++   +lg +     ++ vd ++
   KIR61568.1 116 LERTVRARVERLaNVRFRPPAEATALCGSDDrrRVTgvLLTPRGGAayrLDADLVVDACGRASRSPTWLAALGYPAPAEQRVAVDVTY 203
                  566777777777799********99999999886666544444444678************998877559999999888888888776 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.6e-06     0.014     130     166 ..     308     344 ..     292     349 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.6e-06
          SE 130 kGlillGDalnmRHPltggGmtvalnDivllskllkp 166
                  G ++ GDal    P+ g Gmtva  + +ll++ll +
  KIR61568.1 308 DGYLVFGDALCSFNPVYGQGMTVAAGEGLLLRRLLAG 344
                 699*******************************975 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   5.3e-05      0.16       1      28 [.       9      36 ..       9      48 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.3e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   ++Ga ++GlvaA+ L++a  +v+l+++ 
     KIR61568.1  9 VLGASMAGLVAARVLSEAYDSVTLVDRD 36
                   79***************96689999985 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00023      0.69       2      31 ..       7      36 ..       6      40 .. 0.93
   2 ?    0.2   0.0      0.39   1.2e+03      43      78 ..     117     155 ..     111     159 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00023
                EEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvvers 31
                +vv+G++  gl +A +l+e  ++Vt+v+r 
  KIR61568.1  7 AVVLGASMAGLVAARVLSEAYDSVTLVDRD 36
                79*************************995 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.39
                 HHHHHHHHHHT.TEEEECSEEEEEEEEETTS..EEEEEE CS
   Pyr_redox  43 skilqeklekn.gievllntkveeiegsedg..vesvkl 78 
                 ++ ++ ++e++ +++++  ++++++ gs+d   v++v l
  KIR61568.1 117 ERTVRARVERLaNVRFRPPAEATALCGSDDRrrVTGVLL 155
                 6678888888889************99998546666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3218.09
//
Query:       KIR61569.1  [L=554]
Description: lactate transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.5e-120  402.2  25.2   6.4e-120  401.3  25.2    1.4  1  Lactate_perm  L-lactate permease
  ------ inclusion threshold ------
       0.51   10.3   2.7        2.1    8.3   2.7    2.0  1  DUF3377       Domain of unknown function (DUF3377)


Domain annotation for each model (and alignments):
>> Lactate_perm  L-lactate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  401.3  25.2  7.2e-124  6.4e-120       1     521 [.      15     543 ..      15     544 .. 0.94

  Alignments for each domain:
  == domain 1  score: 401.3 bits;  conditional E-value: 7.2e-124
  Lactate_perm   1 lsalvalvPIlllllalavlklkgykaallslavsviiallvykmpvekvlaavlkgalsgllpialviiaavflyklsvksgafeiirksilsisp 97 
                   lsa  a++P+l l+l+l v+++++ +aa+  lav+v+ a  +++mp +++l+a+ +ga  +l+p ++   +a+++y+++v++g+f+++r+  + is+
    KIR61569.1  15 LSAACAALPLLTLFLLLGVVRARAWVAAFGALAVAVVLAWALWRMPLAQTLLAAGQGATFALFPLVWTFGTAIWIYRMTVHTGHFDTLRRGFARISD 111
                   68999******************************************************************************************** PP

  Lactate_perm  98 drriqvlligfafgaflEGaaGfGtpvAIsaalLvglGfkPlyaaglcLIantapvafGavGiPitagagatklsaleisslvgiilvlisllipll 194
                   drr+q+++i+f+fg++lE  aG GtpvA+++ +L++lGf P+ aa+++L+ant+p afG +G+Pit++ag+t+l+a e++ + g++++++++++pl+
    KIR61569.1 112 DRRVQAMVIAFCFGSLLEALAGQGTPVAVTTVMLLALGFTPVRAATVALVANTVPAAFGPLGLPITTLAGVTGLPATELGMMAGRQVPVVAVVVPLV 208
                   ************************************************************************************************* PP

  Lactate_perm 195 lvilldgvkdiketfpavlvsglsfaiaqflisnvlGpelpsilgalvslvilalflka.fqpkeifrfagkeeskeksel................ 274
                   l++++dg ++++e +   l  g +fa aqf ++n+l   l++i +a  +  +l l+ ++  +p+     +g  e +++s                  
    KIR61569.1 209 LLVVVDGRRGVRELWRPALACGAAFALAQFATANFLTAALADIAAAFAGAGVLLLVTRRaRRPVPAPAGDGPPEPAASSGSaaspaggpgpagspqg 305
                   *************************************************99888887774677777776666665555554678999********99 PP

  Lactate_perm 275 ...kaakilkAlsPfvllvavivltsipllkalfeeggllatkllsleleelsklilkikpiveeatalevvfkfkllsspgtiillaavlsiavlk 368
                        ++   A+ P+v +vav  + ++p++k l  +g  la ++       l+  +l   +  +        f+f +l +pg ++l+a ++++a+l+
    KIR61569.1 306 vtpPPGRAWLAYAPYVTIVAVFAVSQVPAVKRLLDAG-TLAVSWP-----GLH--VLTAAGTPS----PLSTFRFAWLAAPGSLLLVAGLVTMALLR 390
                   9887889999************************954.4444433.....343..333333333....22459************************ PP

  Lactate_perm 369 lsskdalkvlketlkelklpilaiilvlalanlmnvsGlsktlalalaetGsaftlfspllGalGvfltGSdtvsNllFgslQletaeqiglsevll 465
                   +s+++a + ++ tl el+ ++l+++  lal+  mn sG ++tl++ +a +G++f +++p+lG+lGv ltGSdt+sN lFg+lQ+ +a++ gl++vll
    KIR61569.1 391 VSPREAGRLYGRTLYELRWAVLTVVGLLALSFTMNASGQIATLGVWMAGAGTLFAVLAPVLGWLGVALTGSDTSSNSLFGALQVAAAQRAGLDPVLL 487
                   ************************************************************************************************* PP

  Lactate_perm 466 laantvGgvvgkmispqsiaiacaavglvgkEsdllrktviysliyliivgvvall 521
                   +aan++Gg++gkmis q+++ia+aavgl+g+E+dl+r+    s+++l ++++++ l
    KIR61569.1 488 AAANASGGTLGKMISLQNLTIAAAAVGLTGREGDLFRRMFGWSVLLLALMCLLVGL 543
                   ****************************************************9866 PP

>> DUF3377  Domain of unknown function (DUF3377)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.7   0.00024       2.1      25      42 ..     196     213 ..     191     214 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00024
     DUF3377  25 gtvnaiaVvvPlvLllci 42 
                 + v ++aVvvPlvLl+++
  KIR61569.1 196 RQVPVVAVVVPLVLLVVV 213
                 66889**********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 4025.50
//
Query:       KIR61570.1  [L=433]
Description: NADH dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-59  201.3   0.0    2.3e-59  201.0   0.0    1.0  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.9e-10   41.1   2.0    1.3e-05   25.7   0.6    3.2  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    2.5e-05   24.3   0.2       0.41   10.6   0.0    3.4  3  NAD_binding_9   FAD-NAD(P)-binding
    0.00045   19.2   0.0    0.00077   18.4   0.0    1.3  1  Trp_halogenase  Tryptophan halogenase
  ------ inclusion threshold ------
       0.01   15.7   0.4       0.48   10.3   0.0    3.1  3  Rossmann-like   Rossmann-like domain
      0.011   16.0   2.1      0.045   14.0   0.0    2.9  3  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      0.011   14.8   2.3      0.057   12.5   0.0    2.2  2  GIDA            Glucose inhibited division protein A
      0.026   13.8   0.1       0.26   10.6   0.1    2.1  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.041   13.9   0.0          5    7.2   0.0    2.3  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
      0.093   11.9   0.0        4.6    6.3   0.0    2.2  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
       0.13   11.8   8.4        1.6    8.3   0.0    3.8  4  DAO             FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.0   0.0   1.4e-62   2.3e-59       2     294 .]       5     326 ..       4     326 .. 0.90

  Alignments for each domain:
  == domain 1  score: 201.0 bits;  conditional E-value: 1.4e-62
                  SEEEE--SHHHHHHHHHHHH...HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH....HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC CS
                  xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq...agakvtlvelegtclnggcllskallgvaedaeias....evvkklnqgielllgeevvkidpgkkkvklekkke 92 
                  +vv++G+G+AG++aa+tl++   ++a+++l+++++++l+  +ll+++++gv e+++               g++++ g e+ ++d +++ v ++  + 
   KIR61570.1   5 RVVIVGAGFAGYHAAKTLSRtarNKAEIVLLNSTDYFLYL-PLLPEVAAGVVEPGRLSVplsgT-----LDGVRVVVG-EADRVDLQNRWVGYRMPE- 94 
                  8*******************9989*******999999999.9999**********988866642.....348******.999999999888886665. PP

                  TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T.................SEEEEES-SHHHHHHHHHHHHHT-....... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxx....... RF
  Pyr_redox_2  93 gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp.................krivvvGgGyiGvElAaalaklgk....... 166
                  gd+ ++ayd+lvlA Gs +++l+ipGv e+++ + r l +a +l+++ ++                   +vvvG+Gy+G+E+Aa+   + +       
   KIR61570.1  95 GDGGRLAYDRLVLAVGSVNKLLPIPGVTEYAHGF-RGLPEALYLHDHVVRqvelaeltddpaeqrahTTFVVVGAGYTGTEVAAHGQLFTDrlvaqrp 191
                  9999***********************8888777.***********************999998877777***************5444443334566 PP

                  ......EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEE CS
                  ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 167 ......evtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklglelderggi 258
                        +  l++ ++r+l++ld+++s+++ ++l+++Gv+v++gtsv e++++g    v l+dge +++  ++++vGvrp++     +lgl + e+g++
   KIR61570.1 192 hldvrpRWMLLDVAPRVLPELDERMSRTADRVLRRRGVDVRMGTSVAEATPDG----VMLTDGEYVPTCSLIWCVGVRPDPFV--AELGLRT-EKGRL 282
                  666665667********************************************....7**********************977..69***99.***** PP

                  E--TTSBES.STTEEE-GGGC.......TECCSS--HHHHHHHH CS
                  xxxxxxxxx.xxxxxxxxxxx.......xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 259 vvdeflrtn.vpgiyaiGDva.......ggkggpelaqaAvqqG 294
                  vvde+l +   p++ya+GD a        gk   ++aq+A++qG
   KIR61570.1 283 VVDEYLTVPgFPEVYACGDAAavpdltrPGKICTMTAQHAQRQG 326
                  ******9977****************99888999********98 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0    0.0001      0.16       1      37 [.       5      46 ..       5      56 .. 0.74
   2 !   25.7   0.6   7.9e-09   1.3e-05       2      70 ..     163     244 ..     162     250 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0001
                EEEEECSSHHHHHHHHHHHHTT...SEEEEEESSSSSS..TT CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg...kkVtvversdkll..rl 37
                +vv+vG+G+ g  +A++l++ +   +++ ++   d +l  +l
  KIR61570.1  5 RVVIVGAGFAGYHAAKTLSRTArnkAEIVLLNSTDYFLylPL 46
                79****************886644456677777776665555 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 7.9e-09
                 EEEECSSHHHHHHHHHH.............HHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEET CS
   Pyr_redox   2 vvvvGgGyiglElAgal.............aelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegse 70 
                  vvvG+Gy+g E+A+                + + +  +++ ++++l+ lDe +s+   + l+++g++v+++t+v+e + ++
  KIR61570.1 163 FVVVGAGYTGTEVAAHGqlftdrlvaqrphLDVRPRWMLLDVAPRVLPELDERMSRTADRVLRRRGVDVRMGTSVAEATPDG 244
                 59************98766888888877666666899****************************************99665 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00025      0.41       1      32 [.       7      36 ..       7      42 .. 0.87
   2 !    8.0   0.0    0.0016       2.6     113     155 ..      69     111 ..      63     112 .. 0.88
   3 ?    1.6   0.0      0.15   2.4e+02       1      15 [.     164     178 ..     164     195 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00025
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfd 32
                   +ivGaG++G  +++ L + a  +++ ei l +
     KIR61570.1  7 VIVGAGFAGYHAAKTLSRTA--RNKAEIVLLN 36
                   7******************8..8888888765 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0016
  NAD_binding_9 113 egvtvevhraevvdleeradgqavlladgaslaadaVvLAlGh 155
                    +gv+v v +a+ vdl++r  g+++ + dg +la+d++vLA+G 
     KIR61570.1  69 DGVRVVVGEADRVDLQNRWVGYRMPEGDGGRLAYDRLVLAVGS 111
                    56788888888899999999*********************95 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.15
  NAD_binding_9   1 aivGaGprGlavler 15 
                    ++vGaG +G+ v+++
     KIR61570.1 164 VVVGAGYTGTEVAAH 178
                    69********99986 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.7e-07   0.00077       1      35 [.       5      39 ..       5      43 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.7e-07
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SS CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlvesee 35
                    ++vivG+G aG+ aA +l+++ ++k+e+ l++s +
      KIR61570.1  5 RVVIVGAGFAGYHAAKTLSRTARNKAEIVLLNSTD 39
                    69********************999******9976 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.17   2.8e+02      67     112 ..      28      74 ..      17      81 .. 0.74
   2 ?   -1.3   0.0       1.1   1.8e+03       3      26 ..     153     176 ..     133     185 .. 0.76
   3 ?   10.3   0.0   0.00029      0.48      75     106 ..     304     335 ..     301     347 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.17
  Rossmann-like  67 araellllavPdaelp.glvkglaatgavraGtivahtsga.nGveil 112
                    ++ae++ll   d  l   l+ ++aa  +v +G++ +  sg+  Gv ++
     KIR61570.1  28 NKAEIVLLNSTDYFLYlPLLPEVAAG-VVEPGRLSVPLSGTlDGVRVV 74 
                    67889999988887642577788765.899999999888863577665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.1
  Rossmann-like   3 apdersarlsvGiisaGrvGtalg 26 
                    +p e++a  +  +++aG  Gt ++
     KIR61570.1 153 DPAEQRAHTTFVVVGAGYTGTEVA 176
                    466677777777777777777554 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00029
  Rossmann-like  75 avPdaelpglvkglaatgavraGtivahtsga 106
                    avPd   pg +  ++a++a r+G++vah  +a
     KIR61570.1 304 AVPDLTRPGKICTMTAQHAQRQGKLVAHNIAA 335
                    8*************9999**********8776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.8e-05     0.045       1      27 [.       8      37 ..       8      41 .. 0.82
   2 ?   -0.2   0.3      0.74   1.2e+03       1      12 [.     165     176 ..     165     181 .. 0.82
   3 ?   -3.4   0.0       7.3   1.2e+04      41      54 ..     388     401 ..     381     403 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
                   EE--SHHHHHHHHHHHCC...TEEEEEE-S CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka...gfdvlllek 27
                   IvGaG++G  aA +L++    +++++ll +
     KIR61570.1  8 IVGAGFAGYHAAKTLSRTarnKAEIVLLNS 37
                   9***************95444779998865 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.74
                    EE--SHHHHHHH CS
  NAD_binding_8   1 IvGaGlsGlvaA 12 
                    +vGaG +G   A
     KIR61570.1 165 VVGAGYTGTEVA 176
                    8******97655 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 7.3
                    TTCEECTS---EEE CS
  NAD_binding_8  41 pgvrvdygahifhg 54 
                    pg+r+ +ga ++ +
     KIR61570.1 388 PGNRARVGADWLLD 401
                    88899999999876 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.5e-05     0.057       2      42 ..       6      48 ..       5     111 .. 0.82
   2 ?    1.8   0.7     0.061     1e+02       2      16 ..     163     177 ..     162     180 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.5e-05
                EEEE-SSHHHHHHHHHH...HHTT--EEEEES-GGGTT--SSSS CS
        GIDA  2 viViGgGhAGceAAlaa...arlGakvlLithkldtiaelsCnp 42
                v+++G+G AG+ AA ++   ar  a+++L+ +++d ++ l+  p
  KIR61570.1  6 VVIVGAGFAGYHAAKTLsrtARNKAEIVLL-NSTDYFLYLPLLP 48
                9*************8762226677778777.7777777776655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.061
                 EEEE-SSHHHHHHHH CS
        GIDA   2 viViGgGhAGceAAl 16 
                  +V+G+G  G+e A+
  KIR61570.1 163 FVVVGAGYTGTEVAA 177
                 58**********997 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00016      0.26      29      49 ..       4      24 ..       1      37 [. 0.86
   2 ?    0.9   0.0      0.14   2.4e+02      29      46 ..     161     178 ..     155     200 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
                 -EEEEESTSHHHHHHHHHHHH CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakg 49
                  +v+++G+G aG +A++t ++
   KIR61570.1  4 PRVVIVGAGFAGYHAAKTLSR 24
                 58***************9776 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.14
                  -EEEEESTSHHHHHHHHH CS
  AlaDh_PNT_C  29 akvlviGgGvaGlqAiat 46 
                   + +v+G+G  G++ +a 
   KIR61570.1 161 TTFVVVGAGYTGTEVAAH 178
                  5679*********98875 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0031         5      12      43 ..       3      36 ..       1      39 [. 0.76
   2 ?    4.3   0.0     0.024        38       9      30 ..     157     178 ..     149     190 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0031
                  T-EEEEES-SHHHHHHHHHHHCC..T-CEEEEEE CS
  Shikimate_DH 12 ekkvlliGaGemaelvakhLlak..gvkkvvvaN 43
                  + +v+++GaG  +  +ak L++   +  ++v +N
    KIR61570.1  3 KPRVVIVGAGFAGYHAAKTLSRTarNKAEIVLLN 36
                  569*****************97632445566666 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.024
                   ..TT-EEEEES-SHHHHHHHHH CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakh 30 
                   + ++ + +++GaG ++++va h
    KIR61570.1 157 QRAHTTFVVVGAGYTGTEVAAH 178
                   55677899***********987 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.022        36     191     223 ..       3      36 ..       1      44 [. 0.80
   2 ?    6.3   0.0    0.0028       4.6     181     209 ..     147     178 ..      79     189 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.022
  K_oxygenase 191 kkriaVvGsGqSaaeifedllrr.qkkvelklvt 223
                  k r+++vG+G  + + ++ l r+ ++k+e+ l+ 
   KIR61570.1   3 KPRVVIVGAGFAGYHAAKTLSRTaRNKAEIVLLN 36 
                  679****************999955567776665 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0028
  K_oxygenase 181 ylerkee........llakkriaVvGsGqSaaeifed 209
                  +     +        ++a+ +++VvG+G ++ e++ +
   KIR61570.1 147 L-----AeltddpaeQRAHTTFVVVGAGYTGTEVAAH 178
                  3.....123333555899999************9865 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00097       1.6       1      27 [.       5      36 ..       5      41 .. 0.78
   2 ?   -0.7   0.0      0.52   8.5e+02     300     333 ..      81     110 ..      68     125 .. 0.70
   3 ?    1.3   1.2      0.13   2.1e+02       2      17 ..     163     178 ..     162     191 .. 0.88
   4 ?    4.0   0.1     0.018        30     155     263 ..     223     328 ..     213     350 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00097
                EEEEECTSHHHHHHHHHHHHT..T...EEEEE CS
         DAO  1 dvviiGGGiiGlstAyeLarr..g...Vtlle 27
                +vvi+G+G +G  +A  L+r   +   ++ll 
  KIR61570.1  5 RVVIVGAGFAGYHAAKTLSRTarNkaeIVLLN 36
                59****************76432368887775 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.52
                 CGEEEEEEEEEE.ETTSSEEEEEEETEEEEEEEEE CS
         DAO 300 gdvlrkwaGlrp.lpdglpligetpgvkglylatG 333
                  d++ +w+G+r    dg+ l      +++l+la G
  KIR61570.1  81 VDLQNRWVGYRMpEGDGGRLA-----YDRLVLAVG 110
                 56788999*999224665553.....677888777 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.13
                 EEEECTSHHHHHHHHH CS
         DAO   2 vviiGGGiiGlstAye 17 
                  v++G+G++G  +A +
  KIR61570.1 163 FVVVGAGYTGTEVAAH 178
                 69********988866 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.018
                 HHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEE.EEE--GGGHH.HHHTT..CTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEET CS
         DAO 155 aaealGveilegtevtgleeedgkvwgverttpgendaada.vVnaaGawsd.llgll..keldlpispvrgqvlvlkplseklvspaailpvpetddd 249
                  ++++Gv+++ gt v +   +     gv   t+ge +  ++ ++ + G+  d +++ l  ++   + + v  ++l++   +e   +    ++vp+ +++
  KIR61570.1 223 VLRRRGVDVRMGTSVAEA-TP----DGV-MLTDGEYVP-TCsLIWCVGVRPDpFVAELglRT--EKGRLVVDEYLTVPGFPEVYACG-DAAAVPDLTRP 311
                 4799********999987.44....444.345577645.457********998773332222..24477889999995555544333.67778888888 PP

                 TTTEEEEEE...TTSEE CS
         DAO 250 grgvyvtpr...kdgrv 263
                 g+ + +t+    ++g++
  KIR61570.1 312 GKICTMTAQhaqRQGKL 328
                 98888888544455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.58u 0.22s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3125.06
//
Query:       KIR61571.1  [L=263]
Description: spermine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00057   20.5   0.0     0.0011   19.6   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
     0.0062   17.2   0.0      0.012   16.3   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.017   14.5   0.0    1.1  1  Spermine_synth   Spermine/spermidine synthase domain
       0.14   12.4   0.0       0.22   11.7   0.0    1.3  1  Response_reg     Response regulator receiver domain


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.4e-07    0.0011      16      96 .]      82     168 ..      65     168 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.4e-07
                      HTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.T.SS-TT-EEEEEEES.....-CCC-CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  16 krgarvvgvDlskemlklakekaseeglkvefvvadaek.l.pfednsfDlvvsse.....vlhhvedpekalkeiaRvLkpgGllvi 96 
                      + g+  + v+ ++++++l++++ + +++ v++ vada+  +   + + +Dlv++       +  hv    ++ +e+aRvL+p+G+l++
       KIR61571.1  82 RPGSAQLVVERDPAVVDLVRRELPAPPPGVRVDVADARAaVrAAPAQAYDLVLADVyraarMPGHV-ASVEFAAEVARVLRPDGILLV 168
                      444667789999**************996666666666534489999*****99986655555566.6899**************975 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.7e-06     0.012      23      97 .]      86     164 ..      64     164 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.7e-06
                      EEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGB..SSSTTTEEEEEEESTGGG..SS.HHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  23 kvtgvDiseemleaareraeeeglnvefvqgdaedl..pfedgsfDlvvssgalhh..ls.dedlekalkeiarvLkpgG 97 
                        + v+ +++ ++ +r+++ +  + v++ ++da++     +++ +Dlv++  ++    ++ +    ++ +e+arvL+p+G
       KIR61571.1  86 AQLVVERDPAVVDLVRRELPAPPPGVRVDVADARAAvrAAPAQAYDLVLA-DVYRAarMPgHVASVEFAAEVARVLRPDG 164
                      446789999**********998889999999998852247999*******.44333112202345789***********9 PP

>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.8e-06     0.017      18     130 ..      60     167 ..      41     192 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.8e-06
                     ST-EEEEESSTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHSHHHHTTCGGCTTEEEEESTCHHHHCTCSS.-EEEEEEECCS.TTCSSCGC CS
  Spermine_synth  18 npkevLiiGGgDGgvlrevvkhntvekitlvdiDqkvidfskkflpslaisafndarvklvlgdgfkflkayek.kfdvvivdsld.pvgpaenl 110
                      p   L +GGg   + r v        + +v+ D  v+d+ ++ lp    +      v + + d+ + ++a  +  +d v +d     + p  ++
      KIR61571.1  60 APVAALHLGGGALTLPRYVGATRPGSAQLVVERDPAVVDLVRRELPAPPPG------VRVDVADARAAVRAAPAqAYDLVLADVYRaARMPG-HV 147
                     566678888888888888888887788999****************99999......9999999999999999889*********9444444.46 PP

                     SSHHHHHHHHHTEEEEEEEE CS
  Spermine_synth 111 FskeffdllkkvlkedGvii 130
                      s ef   +++vl++dG++ 
      KIR61571.1 148 ASVEFAAEVARVLRPDGILL 167
                     9****************986 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     5e-05      0.22       2      51 ..      88     137 ..      88     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5e-05
                   EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEES CS
  Response_reg   2 livdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDi 51 
                   l+v+ dp+v++l+r+ l      +   ++d+++a++ + ++++dl+l D+
    KIR61571.1  88 LVVERDPAVVDLVRRELPAPPPGVRVDVADARAAVRAAPAQAYDLVLADV 137
                   79****************6555333368899******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2147.34
//
Query:       KIR61572.1  [L=322]
Description: beta-lactamase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-35  122.9   0.3    1.6e-35  122.6   0.3    1.1  1  Beta-lactamase2  Beta-lactamase enzyme family
    6.2e-30  104.6   9.3    2.1e-29  102.8   9.3    1.7  1  Beta-lactamase   Beta-lactamase


Domain annotation for each model (and alignments):
>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.3   1.8e-39   1.6e-35       2     202 .]      84     290 ..      83     290 .. 0.94

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 1.8e-39
                      TTTSEEEESTTS-EE-GGGGHHHHHHHHHHHHHC..TSTGTT-EEEGGHHHHTSSSTSGGGSTTSEEEHHHHHHHHHHTT-HHHHHHHHHHHT. CS
  Beta-lactamase2   2 dtgeelgvnadeefpaaStiKvpillalleavle..gklslderltltaedivggsgilqklpgktlslrdlltlmiavSDNtAtnlLidrlg. 92 
                       tg++l+++ade+f  aStiK + +     a+l+   ++ ld  +++ ++d+v++s++ q++  + ++lr ++ +++ +SDNtA+nl  + lg 
       KIR61572.1  84 GTGRTLAHRADERFAYASTIKALAA----GALLAatSEAELDRVVRYDRADLVSHSPVTQRHVADGMTLRAVADAAVRHSDNTAANLMFTELGg 173
                      5899*********************....555544489******************************************************99 PP

                      HHHHHHHHHHCTHTTSB--SHTTCCH.HHTTSSTTEE-HHHHHHHHHHHHHTTSSHHH...HHHHHHH.T-STTTTTTTTTTTTSEEEEEEEE. CS
  Beta-lactamase2  93 leavnawlkelglretrlrrklpdle.aadkdkrntttardlarllealargellspe...elleils.nqqfrdrlaaglpegvrvahKtGe. 180
                      +  + + l+  g + t+ +r++  l+ aa+ d r+t+t+r++a  l+a a g++ls++    l+++l+ n++ +++++ag+p g++v +KtG  
       KIR61572.1 174 PAGLGRALRGIGDTVTNPARTETSLNeAAPGDLRDTSTPRAMAGSLRAYALGDALSAAdrgVLVDWLRrNTTGSTLIRAGVPAGWQVGDKTGAg 267
                      ****************99999887764888888****************************9******99999********************7 PP

                      ETTEEEEEEEEEE.TTEEEEEEE CS
  Beta-lactamase2 181 ldgvrhdvGivya.dgrpyvvav 202
                       +g+r+d++++++ +g p+v+av
       KIR61572.1 268 GYGTRNDIAVLWPpEGAPIVLAV 290
                      7*******************997 PP

>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   9.3   2.4e-33   2.1e-29       2     329 ..      66     310 ..      65     311 .. 0.94

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 2.4e-33
                     HHHHHHHHHHTTESEEEEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBG.......GGTSTTCTTG CS
  Beta-lactamase   2 drlvrelmaqggipGvavavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpV.......skylPefagp 89 
                     ++l+r+++a   + Gv+++++ +g+++               ++ad++f++aS+ K+++a a+l+   e +  Ld+ V         + P  +++
      KIR61572.1  66 TALERRFDA---RLGVYAVDTGTGRTL--------------AHRADERFAYASTIKALAAGALLAATSEAE--LDRVVrydradlVSHSPVTQRH 141
                     6789999**...***************..............**********************99988885..9999999998885555556666 PP

                     GGTTEBHHHHHTTHSSCSSSSTSTTCTSHHHTHHHHHHHHHHSBSSSSTTSCEE-SHHHHH.HHHHHHHHHHT.SHHHHHHHHHTTTTTTSTTEE CS
  Beta-lactamase  90 gkgkiTlrdLltHtsGlpdlfasdlleeaaadaaellralatlppkyapGtkwgYsntgyg.llgellekvtg.rsleqllreeilrpLgmkdte 182
                      ++++Tlr ++++ +                                       ++nt+++ ++ e l++++g  +  + ++++++ p  +++t+
      KIR61572.1 142 VADGMTLRAVADAAVRH-------------------------------------SDNTAANlMFTE-LGGPAGlGRALRGIGDTVTNP-ARTETS 197
                     6777*************.....................................*******99999.*****988899999*******.****** PP

                     SSTTGGGGGGBEEEEEEETCEEECSCETTHHHHCTTTBEEEEHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEE CS
  Beta-lactamase 183 lgppesgdprdaagytgngpearappanlpaeaegagglistardlarflglalegglllsaetlaqltaklssgttrpagiraglglGwvladk 277
                     l+++++gd rd++++                        +++a +l++++ l    g++lsa+++  l ++l+++tt+  +irag++ Gw+++dk
      KIR61572.1 198 LNEAAPGDLRDTSTP------------------------RAMAGSLRAYA-L----GDALSAADRGVLVDWLRRNTTGSTLIRAGVPAGWQVGDK 263
                     ***************........................***********.8....*************************************** PP

                     CCHTEEEEEEESTEEEEEEEECGG.........TEEEEEEESBCSSHHHHHHHHHHHHHHH CS
  Beta-lactamase 278 tgapgtfghtGggygtyvfvdpea.........nlvvavltnrdppnedaaedarlialaa 329
                     tga       G gygt    ++++         ++v+avl+ rd   +da+ d++lia+aa
      KIR61572.1 264 TGA-------G-GYGT----RNDIavlwppegaPIVLAVLSRRDA--KDAQPDDALIAEAA 310
                     ***.......6.****....*************************..8**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.36s 00:00:00.97 Elapsed: 00:00:00.55
# Mc/sec: 1765.22
//
Query:       KIR61573.1  [L=349]
Description: cobalamin-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-15   56.7   0.1    4.9e-15   55.6   0.1    1.5  1  B12-binding    B12 binding domain
    9.3e-11   42.0   0.6      2e-10   40.9   0.6    1.5  1  B12-binding_2  B12 binding domain


Domain annotation for each model (and alignments):
>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.1   5.4e-19   4.9e-15       2     106 ..      98     198 ..      97     208 .. 0.91

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 5.4e-19
  B12-binding   2 kvllatvggdlhplGlavlaaalrdagfeVqllganvenedivaairaekpdvvglSalltsqleavkelvellkrirprvkvvvGGahpsldpeetl 99 
                  ++++a+  g++h l  +++a++lr +g++V++lga v+++ +v+ + ++++++v+l + l  +l+++ ++ve+ +r   +v+vvvGG ++  d ++  
   KIR61573.1  98 RIVVACMDGEWHALPPRLVAEVLRLRGWQVTFLGASVPAAHLVSYLHRHDAHAVALACALPMRLPHAYRMVEACRRS--DVPVVVGGRGFGRDGRW-- 191
                  79***********************************************************************8665..9*******998888777.. PP

  B12-binding 100 eak.lgid 106
                   a+ lg++
   KIR61573.1 192 -ARrLGVA 198
                  .4336654 PP

>> B12-binding_2  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.6   2.3e-14     2e-10       7      73 ..      19      85 ..      15      87 .. 0.92

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 2.3e-14
  B12-binding_2  7 waivhgdkegieelidealaqgsaavdvlndvllpamkeVGdlfgagelflpqvllsaevmkkavah 73
                    a+   d+ ++ e +  ++++g  a++vl ++++pa  eVG++++++e++++q++ ++++ +++va+
     KIR61573.1 19 LALESADEYAAIETALGLVDAGVPAERVLLELVAPAQVEVGQRWASNEWSVAQEHAATHISERVVAA 85
                   57888899999999999999999****************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2260.07
//
Query:       KIR61574.1  [L=115]
Description: anti-anti-sigma factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-17   62.5   4.4    4.2e-17   62.3   4.4    1.1  1  STAS_2    STAS domain
    1.6e-11   43.9   0.0    1.7e-11   43.8   0.0    1.0  1  STAS      STAS domain


Domain annotation for each model (and alignments):
>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   4.4   4.7e-21   4.2e-17       1      79 [.      17      96 ..      17      97 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 4.7e-21
      STAS_2  1 LsLsGeldldtaaelreqllealaag.aevvvDlsgvervDsaalalLlalartarargrrlvlrglppalrrlldlyGl 79
                L+L+Geld++ta+el + l+++  +g +++ vDl++++++Ds+++a++++  ++a arg+ l+++g+++++ r+l+l+Gl
  KIR61574.1 17 LRLAGELDMSTAPELTAVLDRLTEQGeRHLLVDLAELTFCDSTGIAAFVRGDNRATARGGWLRVTGATGRVERVLRLTGL 96
                89*********************9999****************************************************9 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   1.9e-15   1.7e-11       7     107 ..      11     104 ..       6     114 .. 0.90

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.9e-15
                 CTTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHHHTTCGGCC CS
        STAS   7 iegililrldgpidfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevreklektgffdev 105
                   g  +lrl g++d  +a++++  l+r +++++         ++l +dl +++f Ds+G++a+++  ++  ++g+ + + + +++v++ l+ tg+++++
  KIR61574.1  11 DGGGACLRLAGELDMSTAPELTAVLDRLTEQGE---------RHLLVDLAELTFCDSTGIAAFVRGDNRATARGGWLRVTGATGRVERVLRLTGLAEVL 100
                 455578**************************8.........******************************************************998 PP

                 .... CS
        STAS 106 e..e 107
                 +   
  KIR61574.1 101 GypP 104
                 6555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 908.52
//
Query:       KIR61575.1  [L=148]
Description: chemotaxis protein CheY [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-22   77.8   1.5    7.7e-22   77.6   1.5    1.1  1  Response_reg  Response regulator receiver domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   1.5   4.3e-26   7.7e-22       1     110 [.      11     130 ..      11     132 .. 0.90

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 4.3e-26
                   EEEESSSHHHHHHHHHHHHHTTE.EEEEEESSHHHHHHHH.......HHHHESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHH CS
  Response_reg   1 vlivdDdplvrellrqlleeegy.eevaeaedgkealell.......keekvdlillDinmpgmdGlellkeireed..pelpviiltahseeedav 87 
                   +l+vdDdp  +  ++++l ++++ +++++++dg+ea+e l       +++++d+illD+nmp+mdG ++l e++++d  +++p+++lt+ ++++d+v
    KIR61575.1  11 ILVVDDDPGDVLMIEEALADSDVdKVIDVVSDGQEAMEFLrqsgrhtEARRPDVILLDLNMPRMDGRQVLGEVKQDDdlRTIPIVVLTTSNADTDIV 107
                   8******************999945667************65555444444**********************99999999**************** PP

                   HHHHCTESEEEESSG-HHHHHHH CS
  Response_reg  88 ealkagaddflsKpfdpeeLlka 110
                     + + a+ +++Kp+d ++  + 
    KIR61575.1 108 GSYTLQANAYVTKPIDLDDFNDV 130
                   ****************9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1075.86
//
Query:       KIR61576.1  [L=179]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0056   16.8   0.5       0.24   11.5   0.0    2.2  2  DivIVA      DivIVA protein
  ------ inclusion threshold ------
       0.13   12.4   7.5       0.22   11.6   7.5    1.3  1  ATP-synt_B  ATP synthase B/B' CF(0)


Domain annotation for each model (and alignments):
>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   2.7e-05      0.24      11      38 ..       3      30 ..       1      36 [. 0.86
   2 !    3.4   0.4    0.0083        74      95     123 ..      78     106 ..      66     131 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.7e-05
                --EEEEEEEHHHHHHHHHHHHHHHHHHH CS
      DivIVA 11 FkkklrGYdedeVdeFLdqvakdyeall 38
                F+   +GYd+ +Vd+ Ldq+a  + +l 
  KIR61576.1  3 FSVVEFGYDRRQVDSCLDQLAVRLSRLA 30
                666778***************9988875 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0083
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  95 ekkaekiveeaeeeakkiaeeieelkrqa 123
                 e +a  i+++a+ e++ ++ee  ++++q 
  KIR61576.1  78 EREAAGILAQARFELDAAREEARRVREQV 106
                 44444455555555555544444444443 PP

>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   7.5   2.4e-05      0.22      47      98 ..      79     128 ..      68     141 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
  ATP-synt_B  47 keaaallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaeaerlke 98 
                 +eaa +la+a+ +l  Ar eA+++++++++ea  ++ + ea+ +a  +  +e
  KIR61576.1  79 REAAGILAQARFELDAAREEARRVREQVYAEALSARRDFEAALAARRR--RE 128
                 689999******************************999988876544..44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1172.92
//
Query:       KIR61577.1  [L=141]
Description: OsmC family protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-10   41.7   0.0    1.7e-10   41.3   0.0    1.2  1  OsmC      OsmC-like protein


Domain annotation for each model (and alignments):
>> OsmC  OsmC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   9.5e-15   1.7e-10       3      88 ..      39     122 ..      37     133 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 9.5e-15
                 XSSB-HHHHHHHHHHHHHHHHHHHHTCCCT---SCEEEEEEEEEECCECTCEEEEEEEEEEE-SS-H..HHHHHHHHHHHHHSHHH CS
        OsmC   3 gsgpsPeelllaalasCfaitlravakkkgikledleveveaerdpegakgiteirlkvevkipgadseeklkkllekaekrCpvs 88 
                  +g +Pe+ll+aa+asC+++++   a +   + + ++v++ea+   +   g  +++++ +++++g + +++l++l+++a++  p s
  KIR61577.1  39 CTGLTPEQLLAAAFASCLHHAAVEAAGQITDEAHTVQVRAEARLGRDDD-GRYRADVRASISSAGLS-RQQLAELVAHADELWPFS 122
                 5799*************************88889999999985554433.4899*******999988.6************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1093.89
//
Query:       KIR61578.1  [L=323]
Description: serine/threonine protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-42  143.2   0.0    1.2e-41  142.9   0.0    1.0  1  Pkinase         Protein kinase domain
    5.9e-25   88.0   0.0    7.3e-25   87.7   0.0    1.0  1  Pkinase_Tyr     Protein tyrosine kinase
    1.1e-08   35.3   5.1    0.00011   22.2   0.1    2.8  3  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.047   12.5   0.0      0.059   12.1   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.9   0.0   2.6e-45   1.2e-41       1     255 [.       8     256 ..       8     266 .. 0.91

  Alignments for each domain:
  == domain 1  score: 142.9 bits;  conditional E-value: 2.6e-45
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHHHHSS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.....kdelylvleyveggeladllerkgs 94 
                 y+ ++++G G++++V +a+++  ++ vAvK i+  +++    +++++E +  ++l hpn+  + ++ ++         y+v+e++eg++la +l+  g 
  KIR61578.1   8 YQLEQRIGVGGMSEVWRAHDSVLDRPVAVKLISPGREEVPV-ERIRAEARSAARLVHPNVASVHDFGTSstlpgRPVPYIVMELAEGETLAAHLR-AGP 104
                 78899****************************99888766.59**********************999889888899****************7.799 PP

                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHH CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyell 191
                 l+ + a +++++i+++l+  H++gi+HrD+Kp+N+++     +K+ DFG+a+ +    +  +  +vgt+ YlAPE l++++ ++++D+++lGv+ly  l
  KIR61578.1 105 LDWRIAVRVCAEIAAALAAAHAHGIVHRDVKPANVILT-PCGVKVLDFGIATPAGVPDEapAGIVVGTPAYLAPEQLDRQPATPAADMYALGVLLYYCL 202
                 **************************************.888**********988777767999*********************************** PP

                 HSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTH CS
     Pkinase 192 tgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlta 255
                 +g+ p+++++++e   +  +             e lp  + ++ e+  l+++l++ dp +R++ 
  KIR61578.1 203 AGRLPYPADSTTELLGARRR----------RPAEPLPPIDGLPAEVAGLCRQLMADDPAQRPSS 256
                 *******6666653333333..........357889999***********************94 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   1.6e-28   7.3e-25       2     251 ..       9     255 ..       8     261 .. 0.90

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 1.6e-28
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE....SSSS.EEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct....keep.llivteyvkgGdLlkfLrk 94 
                  +l++++G G  ++V++++ +      +  VavK ++ + +e   e++  ea+   +l hpn+ +++ + t     ++p  +iv+e+++g +L  +Lr+
   KIR61578.1   9 QLEQRIGVGGMSEVWRAHDS----VLDRPVAVKLISPGREEVPVERIRAEARSAARLVHPNVASVHDFGTsstlPGRPvPYIVMELAEGETLAAHLRA 102
                  67899**********99887....8899************************************9988885455333469*****************9 PP

                  TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHH CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfG 192
                      +l+ +  +++++++A++++  +++ +vHrd+   Nv+l+    vk+ DfG+a       +   ++       ++apE l+++  t ++D+++ G
   KIR61578.1 103 G---PLDWRIAVRVCAEIAAALAAAHAHGIVHRDVKPANVILT-PCGVKVLDFGIATPA-GVPDEAPAGIVVGTPAYLAPEQLDRQPATPAADMYALG 195
                  8...**************************************9.889**********99.5666667888888999********************** PP

                  HHHHHHHTTSSGTTTTSHHHHHHHHHHTT..EES-BBTTSBHHHHHHHHHHT-SSGGGS-- CS
  Pkinase_Tyr 193 vllwEiftlgespypglkneevleklkeg..krlekpekcpeelyelmkkcweedpeeRpt 251
                  vll+  +  g+ pyp  +++e+l + +++  + l+  +  p+e++ l ++ ++ dp++Rp+
   KIR61578.1 196 VLLYYCLA-GRLPYPADSTTELLGARRRRpaEPLPPIDGLPAEVAGLCRQLMADDPAQRPS 255
                  ****9988.********9999988775541156788899*********************7 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.8   6.3e-08   0.00028      12     108 ..      21     127 ..      12     128 .. 0.89
   2 !   22.2   0.1   2.5e-08   0.00011     146     198 ..     107     156 ..      98     159 .. 0.80
   3 ?   -0.7   0.2      0.24   1.1e+03     125     139 ..     241     255 ..     170     297 .. 0.59

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6.3e-08
                 EEEEEEETT..--EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-..B--B-CTTBS-EEETTE..EEEEEE----EE-SS.....HHHHHHHHHHHHHHH CS
         APH  12 rtylvttpa..gryvlrrnpparaaeeirrevallrlLakagv..pvPevlagdtddeeigl..lfalieyvpgrsllr.....klsaaqlpellealg 99 
                  +++ +++   +++++++++p+r++  ++r+ a+ r  a++ v   v+ v++++t+ +  g+  ++ ++e  +g++l+      +l+ +++ +++++++
  KIR61578.1  21 EVWRAHDSVldRPVAVKLISPGREEVPVERIRAEARSAARL-VhpNVASVHDFGTSSTLPGRpvPYIVMELAEGETLAAhlragPLDWRIAVRVCAEIA 118
                 477777777757*************************7777.8889*********************************999**999************ PP

                 HHHCCHHCH CS
         APH 100 eflaalhqv 108
                 ++laa h++
  KIR61578.1 119 AALAAAHAH 127
                 *****9986 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 2.5e-08
                 HHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 146 eeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                 ++++ +v a++aa l+++ +++++H+D +p N++++p + +   v+Df+ a++
  KIR61578.1 107 WRIAVRVCAEIAAALAAAHAHGIVHRDVKPANVILTPCGVK---VLDFGIATP 156
                 4555557888888888899*****************66555...9****9986 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.24
                 HHHHHHCHHHCCCGC CS
         APH 125 llrqlesatarllas 139
                 l rql++  +++++s
  KIR61578.1 241 LCRQLMADDPAQRPS 255
                 224444444433333 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.3e-05     0.059     323     388 ..     125     182 ..     108     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.3e-05
  Pkinase_fungal 323 flkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkg 388
                     +   gi+HrD+   N+++t       +   + D+ +a+  +    e+ a++ +GT++++a e l  
      KIR61578.1 125 H-AHGIVHRDVKPANVILT------PCGVKVLDFGIATPAGV-PDEAPAGIVVGTPAYLAPEQLDR 182
                     4.789**************......6777899******9996.6666679********99888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2472.12
//
Query:       KIR61579.1  [L=248]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-29  100.6   0.0    9.8e-29   99.8   0.0    1.4  1  Response_reg  Response regulator receiver domain
    1.2e-27   95.8   0.1    1.4e-25   89.1   0.0    2.4  2  Trans_reg_C   Transcriptional regulatory protein, C terminal
      0.003   17.9   0.0     0.0046   17.3   0.0    1.3  1  FleQ          Flagellar regulatory protein FleQ
  ------ inclusion threshold ------
       0.13   11.6   0.0        0.3   10.5   0.0    1.7  2  DUF2220       Uncharacterized protein conserved in bacteria C


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.0   2.2e-32   9.8e-29       1     111 [.      24     133 ..      24     134 .. 0.99

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 2.2e-32
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vl+vdD+p++ +ll+ +l+ eg  +v++a +g +al  +++ ++d ++lD+++p++dG+++l+++re+ p++pv++lta+++ e+++++l +g dd+
    KIR61579.1  24 VLVVDDEPTLTDLLSMALRYEGW-QVRTAGNGMAALSTARQFQPDAVVLDVMLPDLDGFQVLRRLREHTPTVPVLFLTARDAVEERIAGLTVGGDDY 119
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   ++Kpf+ ee++++l
    KIR61579.1 120 VTKPFSLEEVIARL 133
                   *********99987 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0099        44      34      61 ..     114     141 ..     106     152 .. 0.83
   2 !   89.1   0.0   3.2e-29   1.4e-25       2      77 .]     171     244 ..     169     244 .. 0.96

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0099
                  HTTTTSTSHTHHHHHHHHHHHHHHHTTT CS
  Trans_reg_C  34 vwgededvddrtvdvhisrLRkkLedde 61 
                  v g+d+ +   +++  i+rLR  L+ ++
   KIR61579.1 114 VGGDDYVTKPFSLEEVIARLRALLRRSG 141
                  667888888899************9854 PP

  == domain 2  score: 89.1 bits;  conditional E-value: 3.2e-29
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  + ++lt++ef+lL++L++np+rv+s++++l++vw++d+ +++++v+ +is+LRkk+++ +++p +I+t+rg GY+l
   KIR61579.1 171 QLITLTATEFELLRYLMRNPRRVLSKAQILDHVWNYDFGGQANVVELYISYLRKKIDA-GRAP-MIHTLRGAGYVL 244
                  5599******************************************************.8899.**********87 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     1e-06    0.0046       1      86 [.      23     111 ..      23     141 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1e-06
        FleQ   1 kiLvidddaerrrdletiLeFlgeeveavsseel..saaleessseala..vilgsvssleealealaekdphlPvlllgesdea.eelan 86 
                 ++Lv+dd+ +  + l++ L++ g +v++ ++  +  s ++++ + +a++  v+l + +   + l++l e+ p++Pvl l+ +d+  e++a 
  KIR61579.1  23 RVLVVDDEPTLTDLLSMALRYEGWQVRTAGNGMAalS-TARQFQPDAVVldVMLPDLD-GFQVLRRLREHTPTVPVLFLTARDAVeERIAG 111
                 69***************************99988743.44444444444025666666.899*******************9998666555 PP

>> DUF2220  Uncharacterized protein conserved in bacteria C-term(DUF2220)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   6.6e-05       0.3      95     119 ..      77     101 ..      13     114 .. 0.81
   2 ?   -3.6   0.0       1.3     6e+03     139     157 ..     170     188 ..     150     191 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.6e-05
     DUF2220  95 DthGfaILsrlReklpavksllMdr 119
                 D++Gf++L+rlRe++p+v  l+ + 
  KIR61579.1  77 DLDGFQVLRRLREHTPTVPVLFLTA 101
                 99**************998877664 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.3
     DUF2220 139 relprLteaeaklyedlle 157
                 ++l +Lt  e +l + l++
  KIR61579.1 170 DQLITLTATEFELLRYLMR 188
                 3355577777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1948.14
//
Query:       KIR61580.1  [L=497]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-24   84.8   0.0    9.3e-24   84.1   0.0    1.3  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
      3e-19   68.8   0.9    5.4e-19   68.0   0.3    1.8  2  HisKA        His Kinase A (phospho-acceptor) domain
    9.1e-09   35.6   0.8    3.6e-08   33.7   0.8    2.2  1  HAMP         HAMP domain
    5.2e-05   23.2   0.0    0.00018   21.5   0.0    1.9  1  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.097   12.5   0.0       0.16   11.8   0.0    1.3  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
       0.29   11.1   0.0        0.5   10.3   0.0    1.4  1  HATPase_c_5  GHKL domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0   3.1e-27   9.3e-24       1     109 [.     380     488 ..     380     491 .. 0.94

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 3.1e-27
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesep 98 
                 gd  rL+q++ nl+ Na  +++++++++ ++ a+ d +v++v+D+G+Gip++ + ++fe+f + d+s++r +g tGlGl+iv ++v+ ++G+++v s+p
  KIR61580.1 380 GDAARLHQVVANLLANARVHTPPGTTVTARLAAQPDGVVLTVTDDGPGIPPDLQGEVFERFARgDSSRSRAHGSTGLGLAIVAAVVDAHHGRVEVASRP 478
                 7999****************88**********8779*************************************************************** PP

                 TTEEEEEEEEE CS
   HATPase_c  99 grGttftftlp 109
                  + t ft+ lp
  KIR61580.1 479 -GRTAFTVVLP 488
                 .5677999988 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.3   1.8e-22   5.4e-19       3      67 .]     272     337 ..     270     337 .. 0.96
   2 ?   -3.6   0.0         4   1.2e+04      48      60 ..     382     394 ..     380     398 .. 0.72

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 1.8e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC...T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkre.gklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 ++f+a+ +HELrtPL+ai+g+ae+ +r  ++ +++++ +l+++ese+ r+++lv+dlL l+r+++g
  KIR61580.1 272 RQFVADASHELRTPLAAIRGYAEVARRGrDRVPPDVAHALRRVESESTRMTSLVDDLLLLARLDSG 337
                 79***********************99998888*******************************97 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4
                 HHHHHHHHHHHHH CS
       HisKA  48 arrldhlvedlLd 60 
                 a rl ++v +lL 
  KIR61580.1 382 AARLHQVVANLLA 394
                 6788888888875 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.8   1.2e-11   3.6e-08       2      50 ..     198     256 ..     197     259 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.2e-11
                 HHHTTHHHHHHHHHHHHHHTT.....T..BTSST...CCTTSSSHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaa.....G..dldtr...lpvsgrDEiGeLarafNaMldr 50 
                 ++ ++lrPLrr+a++a r+ +     G   l++r    ++++r E+G+++ a+N+Ml +
  KIR61580.1 198 IVQATLRPLRRVAATATRVTElpldrGevALSVRvpaADTDPRTEVGQVGGALNRMLGH 256
                 67889***************95544459955555665555899*************976 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   5.9e-08   0.00018      36     112 ..     389     468 ..     370     486 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5.9e-08
  HATPase_c_2  36 veEactNavehayleap.egpvevrlesdeealtvevaDsGpgfdpetlpdpteeep........keslkegGrGlalikglvDev 112
                  v    +N    a+ + p   +v+ rl  +++ ++++v+D+Gpg +p  + +  e           +    + G+Gla+++++vD  
   KIR61580.1 389 V----ANLLANARVHTPpGTTVTARLAAQPDGVVLTVTDDGPGIPPDLQGEVFE--RfargdssrSRAHGSTGLGLAIVAAVVDAH 468
                  4....4555555555555788**********************77764433222..24577788899999**************86 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.3e-05      0.16       4      80 ..     386     459 ..     383     476 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.3e-05
  HATPase_c_3   4 ekAlaelvdNsld..AdaenvkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakrkstslGkkGiGlklA 80 
                  ++++a l+ N+       ++v+  +  ++ +   ++++DdG G++++   +++ r+a+ + +    s+ +G+ G+Gl  A
   KIR61580.1 386 HQVVANLLANARVhtPPGTTVTARLAAQP-DGVVLTVTDDGPGIPPDLQGEVFeRFARGDSS---RSRAHGSTGLGL--A 459
                  56777777777542233445666666655.56889***********9888888579999998...588999999994..4 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00017       0.5      57     100 ..     444     487 ..     383     488 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00017
  HATPase_c_5  57 lesskskkeehGiGlksireivkkykgnlsieaedglFtlsvll 100
                    s+++ ++  G+Gl  +  +v+ ++g +++    g+   +v+l
   KIR61580.1 444 DSSRSRAHGSTGLGLAIVAAVVDAHHGRVEVASRPGRTAFTVVL 487
                  3467888999********************99988877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3802.32
//
Query:       KIR61581.1  [L=713]
Description: glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-29  102.5  18.6    2.6e-29  102.5  18.6    3.8  4  PMT_2          Dolichyl-phosphate-mannose-protein mannosyltra
  ------ inclusion threshold ------
        3.6    7.7   9.1        3.5    7.7   3.4    2.7  2  Na_Pi_cotrans  Na+/Pi-cotransporter


Domain annotation for each model (and alignments):
>> PMT_2  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2      0.52   4.6e+03     118     131 ..      45      58 ..      42      70 .. 0.62
   2 !  102.5  18.6   2.9e-33   2.6e-29       1     159 []      97     255 ..      97     256 .. 0.90
   3 ?   -5.3   8.8         2   1.8e+04     100     159 .]     360     427 ..     311     430 .. 0.67
   4 ?   -1.0   0.6       0.2   1.8e+03      25      63 ..     447     484 ..     442     497 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.52
       PMT_2 118 aallliaallylli 131
                 aalll +allyl+ 
  KIR61581.1  45 AALLLATALLYLWG 58 
                 45555556666654 PP

  == domain 2  score: 102.5 bits;  conditional E-value: 2.9e-33
       PMT_2   1 dhPPliawllalftklfgfselairlvsalagvltilllyllarrlfgkraallaalllavvplfvalsalftpdaplvllwalalylllraleknklk 99 
                 d+ P   wl+al++++fg + +ai +++al+gv ++ +l++++rr +g+ a+l+a + lav+p+ + + + ++pda+lvll++ a+y+++ra+e+ +++
  KIR61581.1  97 DKTPASLWLMALSVRVFGLNSWAILVPQALLGVASVGVLFATVRRWYGPAAGLIAGAVLAVTPVATLMFRFNNPDALLVLLLIGAAYATVRAVETASTR 195
                 68999**********************************************************9999999***************************** PP

       PMT_2 100 ywllagvlfGlgflsKytaallliaall..yllis.arrilkekkpylalllalllfspvliw 159
                 + +lag+l+G+gfl+K+ +a+l+i++++  yll+  ++ + + + +++a+l +++ ++   +w
  KIR61581.1 196 WIVLAGALVGFGFLTKMLQAFLVIPVFAgvYLLAApTGFWRRVRQVLAAGLGVVV-AA--GWW 255
                 *************************99999****965555555555555554444.43..444 PP

  == domain 3  score: -5.3 bits;  conditional E-value: 2
       PMT_2 100 ywllagvlfGl..gflsKytaalllia..all....yllisarr.ilkekkpylalllalllfspvliw 159
                 ++l++gv+f +  g++  y+++ l++a  al+     ll++ rr     ++  la+++ l++ ++v  w
  KIR61581.1 360 WLLVTGVIFSFmsGIFHAYYSVALAPAvgALVgigvTLLWQ-RRaPGVPRWQALAATVTLAATLAVTAW 427
                 55666666665223555555555555533333666666666.552444455555666666666655444 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.2
       PMT_2  25 rlvsalagvltilllyllarrlfgkraallaalllavvp 63 
                  l+  la+++ +++  +larr +   +al a++ la  p
  KIR61581.1 447 VLAGGLAAAVLLVVADRLARRAVPVLVALGATAALAG-P 484
                 4555566666666666666666665555555555554.3 PP

>> Na_Pi_cotrans  Na+/Pi-cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.4   0.00039       3.5      69     134 ..     145     213 ..     127     217 .. 0.82
   2 ?    2.2   0.2     0.019   1.7e+02       1      47 [.     354     400 ..     354     402 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00039
  Na_Pi_cotrans  69 qaigvilGaniGttvtaqllslalklsslalllllvgvllllfs..kkk...klkklgeillglgllflgl 134
                     a g+i Ga +  t +a+l+ ++++  +  l+lll+g++ +++   + +   ++  l+ +l+g+g+l   l
     KIR61581.1 145 PAAGLIAGAVLAVTPVATLM-FRFNNPDALLVLLLIGAAYATVRavE-TastRWIVLAGALVGFGFLTKML 213
                    6899**************99.89999999999999999944443221.1346999999********98665 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.019
  Na_Pi_cotrans   1 LfLfGmkllsegleklageklkkilekltsnrlkgvlvGllvTallq 47 
                    L+L+G  ll +g+   +++ + ++  ++   + +g+lvG++vT l q
     KIR61581.1 354 LLLWGGWLLVTGVIFSFMSGIFHAYYSVALAPAVGALVGIGVTLLWQ 400
                    678888888888887777777777778888999**********9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.49
# Mc/sec: 4382.32
//
Query:       KIR61582.1  [L=353]
Description: hypothetical protein TK50_28895 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-19   70.1   0.1    6.9e-19   68.5   0.1    1.7  1  NMT1_2          NMT1-like family
    8.5e-19   68.4   0.1    1.3e-18   67.8   0.1    1.2  1  NMT1            NMT1/THI5 like
    4.1e-09   36.3   0.1    6.1e-09   35.7   0.1    1.2  1  NMT1_3          NMT1-like family
    1.1e-08   34.7   0.1    1.8e-08   34.1   0.1    1.3  1  SBP_bac_3       Bacterial extracellular solute-binding protei
    8.5e-06   25.5   0.3    1.3e-05   24.9   0.3    1.2  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
     0.0038   16.4   0.1     0.0058   15.8   0.1    1.2  1  PBP_like        PBP superfamily domain
  ------ inclusion threshold ------
      0.022   14.1   0.0       0.53    9.6   0.0    2.1  2  LysR_substrate  LysR substrate binding domain


Domain annotation for each model (and alignments):
>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.1   2.7e-22   6.9e-19       5     253 .]      30     267 ..      26     267 .. 0.81

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 2.7e-22
      NMT1_2   5 keqlklGfialtdaaplvvakekglfakeGltvelekqaswaelrdkll...agelDaahv.ltpapl.lidlGiggakadmkvlaslnl...nGqait 95 
                 ++++++    ++  ap++va  kg+f k++++v    + s a +  +l+   +g+lD+ +    +a++ ++++G+      ++v+a  ++       ++
  KIR61582.1  30 PAKVTVNSLEILSLAPMMVADAKGFFGKHDVEV----EFSNADIYSRLAvqgQGKLDVNIPgTGGALFnAVNQGL-----RVRVVADRQQyrcASDNML 119
                 56788888899999***************6664....4455566666666899*******976666553667777.....5555554333111334455 PP

      NMT1_2  96 lsnklkdkkvsdakalkdlvakkkaskplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidgfcvgePwnaqavaegiGvt 194
                 l++      +  + +lk +++     k+ k+a+  +gs ++++l ++L + Gl+  +  ++v++  p+++ +lk+g +d+ +  eP  +q++ +g    
  KIR61582.1 120 LAR-----TAAYDGGLKGVADL----KGKKVAILAKGSSTEYWLDRALGQVGLKQSDLGQVVTLSYPDTANALKSGAVDAGFLVEPLAYQLISDGQAKR 209
                 544.....34455555555333....677**************************77778888888********************************* PP

      NMT1_2 195 altsqelwkdhPekvlgvredfveknpntaralvkalleAtkwldakkenraeaaklla 253
                 +l  +e+ +++    +++++df++k+p++a + +  +le  ++ + +++nr+e++k+++
  KIR61582.1 210 VLAMNEVAPNQEQGLITMSQDFIDKRPEVAARWMAGWLEGVRYYQ-DPANRDEVVKIVS 267
                 *******99999999******************************.**********985 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.1     5e-22   1.3e-18       5     210 ..      44     254 ..      41     258 .. 0.88

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 5e-22
                 HHHHHHHHTTHHHHTTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHH.HHHHTT--EEEEEEEE-......S--EEEEEECCC--SSGGGGTTSEE CS
        NMT1   5 aglyvAkekGYFkeeGldVeivepadpsdatelvasgkadfgvsyqesll.aarakglpvvsvaallq......eplsglivlkdsgikspkDLkGkri 96 
                 a+++vA +kG+F +++++Ve+    d  + ++  ++gk d+ +  +   l  a  +gl v+ va   q      + l + ++  d+g+k ++DLkGk++
  KIR61582.1  44 APMMVADAKGFFGKHDVEVEFSNA-DIYSRLAVQGQGKLDVNIPGTGGALfNAVNQGLRVRVVADRQQyrcasdNMLLARTAAYDGGLKGVADLKGKKV 141
                 89*******************995.88****************998876648888*********98763222214455666677899************ PP

                 EE-S.-TTHHHHHHHHHHHTT--GGG-.EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT-----SEEEEEEHHHHHH-HH CS
        NMT1  97 gyvg.spfekallkallakdggdpsdv.tlvnvggtslakalltgkvDaaiggyenwegvelesegkelrifaladlgvpdyyslvlitnekllkenpe 193
                 ++   ++ +++ l++ l + g++ sd+ ++v+ ++ ++a+al +g vDa++  +e   +++l s+g+  r++a+ ++ + +  + ++  ++++++++pe
  KIR61582.1 142 AILAkGSSTEYWLDRALGQVGLKQSDLgQVVTLSYPDTANALKSGAVDAGF-LVEP-LAYQLISDGQAKRVLAMNEVAP-NQEQGLITMSQDFIDKRPE 237
                 *98857789*************99998679999*****************9.7777.899999***************6.99999************** PP

                 HHHHHHHHHHHHHHHHH CS
        NMT1 194 lvkkFlrAlkkGyeyal 210
                  +++ ++   +G+ y  
  KIR61582.1 238 VAARWMAGWLEGVRYYQ 254
                 ************99964 PP

>> NMT1_3  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.1   2.4e-12   6.1e-09      97     186 ..     124     213 ..     114     236 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 2.4e-12
      NMT1_3  97 vskdsgigsiadlkgkrvsvGpegsGtegsarailealglsekdlklleelgygesadalkdgqldgaalvaGvPvsavtqlaasedikl 186
                 ++ d+g++ +adlkgk+v++ ++gs+te    + l+ +gl+++dl  +  l+y ++a+alk g +d+ +lv  ++   +++  a++ + +
  KIR61582.1 124 AAYDGGLKGVADLKGKKVAILAKGSSTEYWLDRALGQVGLKQSDLGQVVTLSYPDTANALKSGAVDAGFLVEPLAYQLISDGQAKRVLAM 213
                 5568999****************************************************************9999988888777765555 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.1   6.9e-12   1.8e-08      87     188 ..     117     224 ..      58     231 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 6.9e-12
                 EEEEEEETTSHGTCCHSSCGCGTTSEEE.EETTSHHHHHHHHHHHC......TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  87 qvllvrkkdaskissiksladLkgkkvg.vqagstaeellkeelkk......gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv 178
                   ll+r+  a  + ++k++adLkgkkv+   +gs++e +l ++l +      +   v++ ++++  +aLk+g vda +  +p +++l+ + ++k v ++
  KIR61582.1 117 NMLLART--AAYDGGLKGVADLKGKKVAiLAKGSSTEYWLDRALGQvglkqsDLGQVVTLSYPDTANALKSGAVDAGFLVEPLAYQLISDGQAKRVLAM 213
                 3444553..346789*************55667999989999776677775544447789************************************998 PP

                 .ECGGCECEEE CS
                 .xxxxxxxxxx RF
   SBP_bac_3 179 .eeplsseeya 188
                  e++ ++e+  
  KIR61582.1 214 nEVAPNQEQGL 224
                 54444444444 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.3     5e-09   1.3e-05      48     186 ..      78     212 ..      56     231 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 5e-09
                     TTS-SEEE--HHHHH.HHHHHS.-EEEEEEEEETT--SEEEEEEE..EETTSS--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT--HHHHS CS
  Phosphonate-bd  48 agqvDiaflgplayv.qardqa.gveplatrvrsdGsasyrsvii..vradsdiqsledLkgktiafvspsStsGylvpaalLvkeagldpeddf 138
                     +g++D+   g+ +++ +a++q   v+++a r++ +  as  ++++  ++ d +++ ++dLkgk++a+ ++ S   y + +a L  + gl+ + d+
      KIR61582.1  78 QGKLDVNIPGTGGALfNAVNQGlRVRVVADRQQ-YRCASDNMLLArtAAYDGGLKGVADLKGKKVAILAKGSSTEYWLDRA-L-GQVGLKQS-DL 168
                     566666666655443156666447788888887.4444444444310334567*****************99887888888.9.59999966.67 PP

                     SEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH-HHHHTTEEEEE CS
  Phosphonate-bd 139 sevfsgshdaavlavlsgdadaaavsadaledlvaegpedkdelrvia 186
                     ++v + s++ ++ a+ sg +da+++ +  +++l+++g+    + rv+a
      KIR61582.1 169 GQVVTLSYPDTANALKSGAVDAGFLVEPLAYQLISDGQ----AKRVLA 212
                     999999******************88877777777653....334444 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   2.2e-06    0.0058      64     156 ..     102     199 ..      61     205 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.2e-06
                 E-CC-HCHCCCCHCCHHH.........S--BGGGC-S-B-EEEEE-TTSHHHHHHHHHHC-CEECTE-SSTTSEEESSHHHHHCCHCCETTCCECCCGG CS
    PBP_like  64 vnlarreqglvvakgnpk.........kitnwkdladaplrlvnRetGSGtrdlfdellkkegiskssikgyaqearshlavaaaVaagradvgvgiea 153
                 v+++ + q +  a++n +         ++++++dl+     ++  ++GS t + +d++l + g+++s++ ++  +  s  + a a ++g +d+g+ +e+
  KIR61582.1 102 VRVVADRQQYRCASDNMLlartaaydgGLKGVADLKG--KKVAILAKGSSTEYWLDRALGQVGLKQSDLGQV--VTLSYPDTANALKSGAVDAGFLVEP 196
                 4455555555555555445444444446999999955..55555689***********************96..89999****************9999 PP

                 -HC CS
    PBP_like 154 vae 156
                  a 
  KIR61582.1 197 LAY 199
                 885 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00021      0.53      54     129 ..      79     164 ..      57     171 .. 0.79
   2 ?    2.3   0.0     0.037        94      39      65 ..     171     197 ..     169     217 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00021
                     TSSSEEEEESSS.....CCTTEEEEEEEEEEEEEEEETTSGGGG.....SSSECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEE CS
  LysR_substrate  54 gelDlairagpp.....edsglearpLaeeplvlvaspdhpLar.....gepvsledLadeplilleegsglrdlledalreaglk 129
                     g+lD+ i +          +gl++r++a+ + + +as++  Lar     g     +dL++ +   l +gs++  +l++al++ glk
      KIR61582.1  79 GKLDVNIPGTGGalfnaVNQGLRVRVVADRQQYRCASDNMLLARtaaydGGLKGVADLKGKKVAILAKGSSTEYWLDRALGQVGLK 164
                     555555544444455567899*******************888899996555599****************************997 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.037
                     EEEESHHHHHHHHHTTSSSEEEEESSS CS
  LysR_substrate  39 lvegdseelldllaegelDlairagpp 65 
                     +v+ + ++ +++l++g +D++++ +p+
      KIR61582.1 171 VVTLSYPDTANALKSGAVDAGFLVEPL 197
                     56666788999************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2681.49
//
Query:       KIR61583.1  [L=263]
Description: hypothetical protein TK50_28905 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-24   85.7   0.0    6.8e-24   84.9   0.0    1.4  1  ABC_tran     ABC transporter
      3e-09   37.1   0.1     0.0017   18.2   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
     0.0005   20.5   0.4     0.0012   19.3   0.2    1.8  2  AAA_16       AAA ATPase domain
     0.0017   18.3   0.0     0.0031   17.4   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
     0.0029   17.9   0.3      0.011   16.0   0.3    2.0  1  AAA_22       AAA domain
     0.0031   18.0   1.7        1.6    9.2   0.0    2.2  2  AAA          ATPase family associated with various cellular a
      0.005   17.1   0.4       0.12   12.6   0.0    2.3  2  AAA_28       AAA domain
  ------ inclusion threshold ------
      0.012   15.3   0.1      0.027   14.2   0.1    1.5  1  AAA_29       P-loop containing region of AAA domain
      0.035   13.5   0.1          1    8.8   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
      0.068   13.7   0.0       0.11   13.1   0.0    1.5  1  AAA_18       AAA domain
      0.072   13.0   0.0       0.67    9.8   0.0    2.0  2  ATPase_2     ATPase domain predominantly from Archaea
      0.094   12.4   0.0       0.37   10.4   0.0    1.7  2  AAA_15       AAA ATPase domain
      0.094   12.6   0.1       0.17   11.8   0.1    1.3  1  Rad17        Rad17 P-loop domain
       0.23   10.6   0.0       0.39    9.8   0.0    1.3  1  NB-ARC       NB-ARC domain
       0.25   11.2   2.7       0.47   10.3   0.2    2.4  3  NACHT        NACHT domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.0   5.7e-27   6.8e-24       3     137 .]      25     162 ..      23     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 84.9 bits;  conditional E-value: 5.7e-27
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..........esdeeiekalsk 91 
                 n+s  +++ e v ++G++G+GKStLl ll gl +p++Gei++ g+   +          +++ q+  l p  ++ +n           ++++ e a+++
  KIR61583.1  25 NLSTAVEAQEFVCVIGPSGCGKSTLLGLLGGLRRPDSGEIRFVGERGAD------GPLTSIVWQDYALIPWRSIVDNvafglelrgvSARRRREVAREH 117
                 8999************************************888665555......8888999***********99999********9888888888999 PP

                 STTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  92 lglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 l + +  +  ++ +p++LSgG++qr  +aral+++p++ll+DEp+a
  KIR61583.1 118 LAMMG-IEAFADAKPHELSGGMRQRAGIARALASDPEVLLMDEPFA 162
                 99888.555668888*****************************85 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.4e-06    0.0017       1      38 [.      35      72 ..      35     110 .. 0.70
   2 !   16.9   0.0   3.6e-06    0.0044     234     299 ..     131     194 ..     124     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.4e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl....drdvegltdelsg 38
                + ++iGp g+GKS+LL +l +l+r     +    +   e++ 
  KIR61583.1 35 FVCVIGPSGCGKSTLLGLLGGLRRPdsgeI----RFVGERGA 72
                5789******************98744443....33333333 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 3.6e-06
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll..ellkelsrngaQviltTHSp 299
                 ++elS G+++ ++++ al++++    +ll DEp +  +   +r+ll  ell   srn+  v++ THS 
  KIR61583.1 131 PHELSGGMRQRAGIARALASDP---EVLLMDEPFAAVDA-QTRTLLqdELLQVWSRNRKTVLFITHSI 194
                 6899*******99999999988...9*************.6666666888888888999********5 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2     1e-06    0.0012      21     156 ..      31     173 ..      21     191 .. 0.55
   2 ?   -2.4   0.0       4.6   5.5e+03      67      94 ..     230     256 ..     207     261 .. 0.58

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1e-06
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekd...ggiflrgkcdql..esa.....ipysalaqalareellrqlldeaesaeleawrekleealaavp 109
                 + + e v ++G+sG+GKs+l+  l   l++    ++ f+ ++  +   + +      +++++ ++ ++   +  +l+  +++ +++ +++ ++ ++ + 
  KIR61583.1  31 EAQ-EFVCVIGPSGCGKSTLLGLLG-GLRRPdsgEIRFVGERGADGplT-SivwqdYALIPWRSIVDN-VAFGLELRGVSARRRREVAREHLAMMG-IE 124
                 333.899**************9888.45555465355544444444211.023311234567777755.777777777666555555555555555.55 PP

      AAA_16 110 elagaeasrllellkrll..allsrderplvlvlD.dlqwadeaslqlla 156
                 + a+a+++ l   +++ +  a++   ++p vl++D  +  +d+++++ll+
  KIR61583.1 125 AFADAKPHELSGGMRQRAgiARALA-SDPEVLLMDePFAAVDAQTRTLLQ 173
                 5555555555555555553333333.334444444146666666666654 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.6
      AAA_16  67 ipysa.laqalareellrqlldeaesael 94 
                 +++++ ++++  r +l +ql d++ +ae+
  KIR61583.1 230 VELDPrFTELK-R-HLWAQLRDATLAAEW 256
                 44455333333.4.777777666444333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.6e-06    0.0031      93     137 ..      26      71 ..      14      77 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.6e-06
                  HHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--------- CS
  RsgA_GTPase  93 lkellkd.ktsvlvGqSGvGKStLinallpelelktgevseklgrG 137
                  l+++++  ++++++G+SG GKStL+  l +  +   ge++   +rG
   KIR61583.1  26 LSTAVEAqEFVCVIGPSGCGKSTLLGLLGGLRRPDSGEIRFVGERG 71 
                  566666658999*************999988788888887666666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.3   9.6e-06     0.011       4      70 ..      32     106 ..      30     198 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.6e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee........erpevvfvtlpsst..sskdllrellralglelka 70 
                  + +++v+G+sG+GK+tll  l       ++  e        ++ ++ ++  +      ++++  +++  l+l++ +
  KIR61583.1  32 AQEFVCVIGPSGCGKSTLLGLLGGLRR--PDSGEirfvgergADGPLTSIVWQDYAliPWRSIVDNVAFGLELRGVS 106
                 57899*************987766542..222223455555544444444444444455555555555555555555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.5    0.0032       3.8       1      15 [.      36      50 ..      36      58 .. 0.88
   2 !    9.2   0.0    0.0013       1.6      46     117 ..     138     196 ..     103     219 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0032
                EEEESSTTSSHHHHH CS
         AAA  1 vllyGppGtGKTlla 15
                v+++Gp G+GK++l 
  KIR61583.1 36 VCVIGPSGCGKSTLL 50
                689*********986 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTH CS
         AAA  46 irelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldp 117
                 +r+    a++ a +p +l++DE  a + ++       ++ ++++Ll+++++ +k   +v++i+ +     +++
  KIR61583.1 138 MRQRAGIARALAsDPEVLLMDEPFAAVDAQ------TRTLLQDELLQVWSRNRK---TVLFITHS-----IEE 196
                 444444455555679*******99999999......89999***********99...47776544.....333 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0    0.0001      0.12       2      20 ..      36      54 ..      35      73 .. 0.73
   2 ?    2.5   0.1      0.13   1.6e+02      29     116 ..     112     192 ..      96     202 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0001
      AAA_28  2 ivitGgestGKTtlleaLa 20
                ++++G++++GK+tll  L 
  KIR61583.1 36 VCVIGPSGCGKSTLLGLLG 54
                89*************9987 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.13
      AAA_28  29 EaareileeklakgedalpwvedllafaervleeqleeeaaaaankvlfcDrglldtlaYarayggeaeaeleaaarekrydlvfllp 116
                 E+are l   + + +      +++ ++  ++ + +  + a a++++vl++D  + ++ a  r++ ++   el + + ++r +  f++ 
  KIR61583.1 112 EVAREHLAMMGIEAFA----DAKPHELSGGMRQRAGIARALASDPEVLLMDEPFAAVDAQTRTLLQD---ELLQVWSRNRKTVLFITH 192
                 4444444444433333....23445566666655555556668888888888777776666666666...777777777777777665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.3e-05     0.027      20      39 ..      31      50 ..      23      55 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.3e-05
      AAA_29 20 dlkgatlltGpsGsGKSTll 39
                + ++++ ++GpsG GKSTll
  KIR61583.1 31 EAQEFVCVIGPSGCGKSTLL 50
                55568899***********8 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00084         1      24      41 ..      33      50 ..      22      53 .. 0.85
   2 ?    2.7   0.0     0.059        70     135     198 ..     132     195 ..      93     210 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00084
                SSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnll 41
                ++f +++Gp G+GKs ll
  KIR61583.1 33 QEFVCVIGPSGCGKSTLL 50
                679************986 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.059
                 TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH....HHCTTSEEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx RF
       SMC_N 135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk....eksknaQfivislr 198
                 ++LSgG ++ + +a  +A    +p+ + l+De  aa D++ ++ + + l     +++k++ fi  s++
  KIR61583.1 132 HELSGGMRQRAGIARALAS---DPE-VLLMDEPFAAVDAQTRTLLQDELLqvwsRNRKTVLFITHSIE 195
                 4788888888888777664...454.5689**********9999875443132134444444444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.1e-05      0.11       1      41 [.      36      89 ..      36     137 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.1e-05
      AAA_18  1 IlltGtpGvGKttlakeL......skrlgf...........gvnlrdvakenglllev 41
                +++ G++G+GK+tl   L           +              l++++++++ l+++
  KIR61583.1 36 VCVIGPSGCGKSTLLGLLgglrrpD----SgeirfvgergaDGPLTSIVWQDYALIPW 89
                79************99994443320....12234455555555666666665555555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00056      0.67      18      37 ..      31      50 ..      25      60 .. 0.89
   2 ?    0.6   0.0      0.36   4.3e+02     121     154 ..     154     185 ..     144     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00056
    ATPase_2 18 epneiyfiYGpegsGKtaLl 37
                e +e++ + Gp g+GK++Ll
  KIR61583.1 31 EAQEFVCVIGPSGCGKSTLL 50
                5688999************8 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.36
    ATPase_2 121 iiiiDelqklidlglngaellvkeLlnliesltk 154
                 ++++De + ++d + +  +ll +eLl+++ +  k
  KIR61583.1 154 VLLMDEPFAAVDAQTR--TLLQDELLQVWSRNRK 185
                 7999*****9976666..9999999999987544 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00031      0.37      18      43 ..      29      53 ..      25      59 .. 0.88
   2 ?   -0.9   0.0      0.87     1e+03     322     365 ..     150     193 ..     141     194 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00031
      AAA_15 18 eidlseeltvliGkNnsGKSsileal 43
                 ++ +e + ++iG+ ++GKS++l +l
  KIR61583.1 29 AVEAQE-FVCVIGPSGCGKSTLLGLL 53
                577888.***************9776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.87
      AAA_15 322 eknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                 +++ +ll++EP a    q  + l + l+ + + n++ v++ THS
  KIR61583.1 150 SDPEVLLMDEPFAAVDAQTRTLLQDELLQVWSRNRKTVLFITHS 193
                 5778999999999999999****************99999***9 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00014      0.17      46      65 ..      34      53 ..      24      60 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
       Rad17 46 riLLisGPsGCgkstvvkvL 65
                + + + GPsGCgkst +  L
  KIR61583.1 34 EFVCVIGPSGCGKSTLLGLL 53
                567789*********98776 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00033      0.39       8      37 ..      22      50 ..      18      52 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00033
                HHHHHHCTTTSCSEEEEEEESTTSSHHHHH CS
      NB-ARC  8 viekLlekdelqslvvalvGmgGvGKttla 37
                v ++L+   e q  +v + G  G+GK+tl+
  KIR61583.1 22 VVGNLSTAVEAQ-EFVCVIGPSGCGKSTLL 50
                667888888888.899************96 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00039      0.47       3      17 ..      36      50 ..      34      57 .. 0.90
   2 ?   -1.8   0.0       2.2   2.6e+03     145     163 ..     100     118 ..      94     120 .. 0.88
   3 ?   -0.7   0.0      0.96   1.1e+03      55      88 ..     169     202 ..     158     211 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00039
                EEEEC-TTTCHHHHH CS
       NACHT  3 vilqGeaGsGKTtLl 17
                v++ G++G+GK+tLl
  KIR61583.1 36 VCVIGPSGCGKSTLL 50
                89************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.2
                 EEEE--TCCHHHHHHHHCT CS
       NACHT 145 levegfsesrrkqlvrkyf 163
                 le++g s+ rr++++r+++
  KIR61583.1 100 LELRGVSARRRREVAREHL 118
                 689999*********9987 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.96
                 CHHHCCCCTS--SSS-CCHHHHCCSCCCEEEEEE CS
       NACHT  55 adllfsqlpepaapvsevwavllelperlLlilD 88 
                 ++ll ++l++ +++ ++ + +++   e +Ll+ D
  KIR61583.1 169 RTLLQDELLQVWSRNRKTVLFITHSIEEALLLAD 202
                 5677778888888888777777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 1799.62
//
Query:       KIR61584.1  [L=312]
Description: hypothetical protein TK50_28910 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-13   48.9   0.0    9.2e-13   48.2   0.0    1.3  1  Polysacc_deac_1  Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   5.1e-17   9.2e-13      14     123 ..      79     188 ..      73     189 .. 0.95

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 5.1e-17
                      EESSCSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHHHHHHHHHHHS----EEE-GGGE CS
  Polysacc_deac_1  14 DdgprdntteilpvLkkykvkatffvigglvedypdevremaasGveignHtinhsnlkrlseeevrreierakdalrkalgreprlfryPygs 107
                      + g+r +  ++l ++++ + + t++   +  +++  + ++ +++G+ei +H+  +   + ++ee++r+ei ra++ + + +g++p+ +   y  
       KIR61584.1  79 EYGSRAGAWRLLRLFERMGTPVTVYGCAEALARNRPLTKAFVEAGHEICSHGLRWREPSGMTEEQERAEIRRAVELIGELCGERPVGWYSRYAP 172
                      66889999*******************************************************************************9999999 PP

                      E-HHHHHHHHHTT.EE CS
  Polysacc_deac_1 108 asatvlevarelgfay 123
                        +t +  ++e gf+y
       KIR61584.1 173 SERTRRLLVEEGGFRY 188
                      8888888999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2334.56
//
Query:       KIR61585.1  [L=492]
Description: hypothetical protein TK50_28915 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-45  156.1  22.1    1.4e-45  155.7  22.1    1.2  1  MmgE_PrpD  MmgE/PrpD family


Domain annotation for each model (and alignments):
>> MmgE_PrpD  MmgE/PrpD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.7  22.1   7.7e-50   1.4e-45      54     410 ..      76     425 ..      31     446 .. 0.89

  Alignments for each domain:
  == domain 1  score: 155.7 bits;  conditional E-value: 7.7e-50
                 -B-TT-EE-TTS.S-EE-HHHHHHHHHHHHHCTS-S-BEESSSEE-GGGGHHHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHCCC--SCCCT.B-THHH CS
   MmgE_PrpD  54 tggpggatvigt.gerlspvkAAfvnGaaihalDfdDthlaaelhhpsdvlpaalAvAealgasgkdlLtAivvGyEvqgrlglalsfnhygfhdtvtl 151
                    +g +t++   g + sp +AA v +aai     d   ++a +h++     aalA+ e ++ + + lL+A++vG Ev++rlgl l++ + g h+++ +
  KIR61585.1  76 GHRDGRCTLLAAhGATDSPDRAAAVTAAAITTTQCDEGLREARGHPGLHAYAAALAATEDADGDLRTLLRALAVGWEVGARLGLLLGPLRDGVHPHGGW 174
                 445667888875266789********************************************************************************* PP

                 HHHHHHHHHHHHTT--HHHHHHHHHHHHCT-.B-BSGGGSTTT--CHHCHHHHHHHHHHHHHHHHHTT---TTTTT-TTTSHHHHHSTT-----S.S-S CS
   MmgE_PrpD 152 gtfgaaaaaakLlgLdaeqianAlgiaatqa.aglrqyrhagtkskklwaaGdAarnGveaallAkrGftGpsdilegewGflavlsggkdlelevkpl 249
                 gt +aaaaa+   gLd++ +a+A+ +a+t a ag+ ++ + g+ + +l  ++  + +G++ a+l+++Gf +  ++ ++  G  a      +++ +   l
  KIR61585.1 175 GTAAAAAAAGVAAGLDTAGLADAVNLALTVAlAGPDESTRRGAPAHHL-LPALGTAAGLTVAYLVRDGFPATGPAAAH-LGRTAHQGPPTPVAVD-AAL 270
                 ****************************99735999999999999999.********************999998773.3444444444444444.444 PP

                 S...SHHHHC-B---SSS-CCCHHHHHHHHHHHHHHCCTCCCEEEEEEEE-HHHHHHC---S---SHHHHCT-CCHHHHHHHHCS---CCCCSCCCCTS CS
   MmgE_PrpD 250 gegesweienvlfKpypaerhthaaidaalklraelklkpddIesieirtseaalriigkkgppenradadhSlqyvvAvalldgrvtledfederlad 348
                    ++  + + +fKp  ++ h+ ++  aa++l ++++   +d++ ++++t++ a+ +  ++ +p+nr+ +++S++++vA++ll  + +++d   e++++
  KIR61585.1 271 --ATRPLLPDAYFKPVGVCAHALTSWTAARSLARDVPG--ADVATVTVHTYAGAALLA-ER-FPANRLARQFSIPWAVACGLLGLDPGVADGRTETVRH 363
                 ..49*********************************9..************987555.55.7************************************ PP

                 CHHCCHHCCEEEEE-HHHHHHHTTT---EEEEETTS-B---EEESS-TTSGGHHHHHHHHHH CS
   MmgE_PrpD 349 pevqaLrekvevvedpeltadypekrsivvvvlkdggrtleerveypkGhprnplsreelee 410
                  e  +++++v+v++dp l+  yp  r++vv   ++ gr +++r+ +  G+++ pls +el +
  KIR61585.1 364 AEAARIAARVTVRHDPGLDDGYPYGRPAVVELRDRAGRCHTARARFHPGDREAPLSADELAA 425
                 ***************************99999999************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3723.76
//
Query:       KIR61586.1  [L=325]
Description: hypothetical protein TK50_28925 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-42  142.7   0.0    1.7e-41  141.9   0.0    1.5  1  Asparaginase    Asparaginase, N-terminal
    1.3e-25   89.8   1.0    2.3e-25   89.0   0.3    1.8  2  Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
  ------ inclusion threshold ------
      0.044   13.8   3.1        1.2    9.3   1.5    2.5  2  PA              PA domain
       0.21    9.9   0.1        1.6    7.0   0.0    2.1  3  Gly_reductase   Glycine/sarcosine/betaine reductase component


Domain annotation for each model (and alignments):
>> Asparaginase  Asparaginase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.9   0.0   3.8e-45   1.7e-41       1     182 [.       2     180 ..       2     189 .. 0.95

  Alignments for each domain:
  == domain 1  score: 141.9 bits;  conditional E-value: 3.8e-45
                   EEEEEEEESGGGEEECTTS--CCEES-HHHHHCCTTTCCCCSEEEEEEEEEE-GGG--HHHHHHHHHHHHHHCCT.-SEEEEE--STTHHHHHHHHH CS
  Asparaginase   1 kvlvlatGGTiasekdesggalapalsaeellealpelekiaeleseqlanidSsnmtpadwlklaeaieealee.ydgfVvlhGTDTlaytAsaLs 96 
                   +++vlatGGTias+  ++g +la + s++ell ++p+l+++ e+   +l + +S  +t +d+l  ++a++++l + ++g+Vv+hGTDTl+++A++  
    KIR61586.1   2 RIAVLATGGTIASRLAPDG-TLAVTDSVAELLGNVPDLADV-EICGFDLSRRPSFTLTLDDMLGTVRAVRAKLAGgFAGVVVTHGTDTLEEAAYLTG 96 
                   799***************9.88888****************.*******************************777*****************9998 PP

                   HHEES.SSEEEEE--SS-TTSTT-SHHHHHHHHHHHHHCGGTTSECEEEETTEEEETTTEEE-BSSSSS-EEETTT--SEEEETTE CS
  Asparaginase  97 lmlknldkpvvltGsqrplselrsDgpeNlldAllvaasseriagvlvvfngkllranrvtKvhtssldaFespnlgplaevegsk 182
                    +    d  vvltG+qr ++e+ sD+++NlldA++v++++ +  g+++v++g  ++a + +Kvhts+++aF+   +g+la v+ + 
    KIR61586.1  97 QLTSR-DARVVLTGAQRGADEPDSDAARNLLDAIRVVSAP-EPVGAAIVLGGVACAAVEGRKVHTSAVSAFSGGPAGALALVDPDG 180
                   88887.**********************************.9**************************************996554 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.69   3.1e+03      51      55 ..     101     105 ..      64     143 .. 0.53
   2 !   89.0   0.3   5.2e-29   2.3e-25       1     103 [.     204     306 ..     204     316 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.69
                     TT-EE CS
  Asparaginase_C  51 rgivv 55 
                     r+  v
      KIR61586.1 101 RDARV 105
                     22222 PP

  == domain 2  score: 89.0 bits;  conditional E-value: 5.2e-29
                     -EEEEE--TT--HHHHHHHHHTT--EEEEEEBTTTB--HHHHHHHHHHHTTT-EEEEEESSSBS-----H.....HHHHHTEEE-TT--HHHHHH CS
  Asparaginase_C   1 rVvvlklhpgmdtkvlkallkkgakGvvlegtGvGnlpsallealkeakargivvvatsqcpsgsvsnseyeagkelerlgvisaddmtpeaari 95 
                     rV+++kl++g+d+  l+a l++ga Gvv+e++G+Gn+p+++ ea++ea ++g++vv+ts++  g+v + + ++g +l ++g++ a+d+t  +ar+
      KIR61586.1 204 RVDLVKLVAGADGTHLRASLRAGAAGVVVEAFGAGNAPPSVAEAVREADKQGVPVVITSRTGAGRVRPIYSGGGADLAQAGALFAGDLTGSQARV 298
                     8********************************************************************999*********************** PP

                     HHHHHCTT CS
  Asparaginase_C  96 kLmlllgk 103
                      L+l+l+ 
      KIR61586.1 299 ALALALAL 306
                     *****985 PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.014        64      38      58 ..      66      89 ..      37     124 .. 0.65
   2 ?    9.3   1.5   0.00026       1.2      40      84 ..     220     264 ..     138     268 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.014
          PA 38 KarnAq.aaGAagviivndge..l 58
                +a  A+ a G agv++ + +   +
  KIR61586.1 66 RAVRAKlAGGFAGVVVTHGTDtlE 89
                556666356677777774332221 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00026
          PA  40 rnAqaaGAagviivndgelgaatgasgnegepdgitiPavgvsre 84 
                 r+  +aGAagv++   g++ a++  +   +e+d+ ++P+v  sr+
  KIR61586.1 220 RASLRAGAAGVVVEAFGAGNAPPSVAEAVREADKQGVPVVITSRT 264
                 55569********977777778888888899999*****998876 PP

>> Gly_reductase  Glycine/sarcosine/betaine reductase component B subunits
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.048   2.1e+02     377     413 ..      58      95 ..      53     100 .. 0.81
   2 ?   -3.8   0.0      0.71   3.2e+03     304     348 ..     128     172 ..     119     177 .. 0.70
   3 ?    7.0   0.0   0.00036       1.6     303     345 ..     226     268 ..     217     275 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.048
  Gly_reductase 377 mekviGel.eavdvlsGgvegslkedgsievelqaiig 413
                    ++ ++G++   +++l+Gg++g + ++g+ ++e  a+++
     KIR61586.1  58 LDDMLGTVrAVRAKLAGGFAGVVVTHGTDTLEEAAYLT 95 
                    577899996677899******99999998888777665 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.71
  Gly_reductase 304 adgvivseeGyGnpdtdlimnikklekaGiktvlitdelaGrdga 348
                    a  v+ + e +G + +   + + ++e + ++t  ++    G  ga
     KIR61586.1 128 AIRVVSAPEPVGAAIVLGGVACAAVEGRKVHTSAVSAFSGGPAGA 172
                    555666667777777777777888888888888777777766665 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.00036
  Gly_reductase 303 gadgvivseeGyGnpdtdlimnikklekaGiktvlitdelaGr 345
                    ga gv+v   G Gn+   +   +++++k+G+ +v+ +   aGr
     KIR61586.1 226 GAAGVVVEAFGAGNAPPSVAEAVREADKQGVPVVITSRTGAGR 268
                    7899******************************999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2291.29
//
Query:       KIR61587.1  [L=133]
Description: glyoxalase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-08   34.3   0.0    3.8e-08   33.6   0.0    1.4  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    7.3e-05   23.5   0.6    9.2e-05   23.2   0.6    1.1  1  Glyoxalase_6  Glyoxalase-like domain
  ------ inclusion threshold ------
      0.035   14.0   0.0      0.052   13.5   0.0    1.2  1  Glyoxalase_2  Glyoxalase-like domain
       0.11   13.1   0.0       0.13   12.8   0.0    1.2  1  3-dmu-9_3-mt  3-demethylubiquinone-9 3-methyltransferase


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   8.4e-12   3.8e-08       6     126 ..       9     123 ..       4     125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 8.4e-12
                 EEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSC.....TSEEEEEEEEEHCHHHHHHHHHHHTTG CS
  Glyoxalase   6 allvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkiee.....tvhhvafialdvedvgkaldrlkeagv 99 
                    v+d++++ldFY++ LG+++    +       ++     ++g ++++   e+  + ++++    +         +af++ d  +v++ + +l  ag+
  KIR61587.1   9 GTTVADMARTLDFYRR-LGLDIPAGAE-----AEPHVELTLDNGLRLAWDTVETIRSFDPGW----TpptgsPRMSLAFRCADPAEVDRRWAELTGAGF 97 
                 5689************.*****99999.....556666666666666666666666666666....3333345669*********************** PP

                 EEEEEEECHHCTEEEEEEEEETTSEEE CS
  Glyoxalase 100 kvvaepgrhyfgalysfyfrDpdGill 126
                   + +p + ++g++y +   Dp G+ +
  KIR61587.1  98 HGHLPPWDAVWGQRYAV-LHDPEGNGV 123
                 ***************76.******976 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.6   2.1e-08   9.2e-05       6     106 ..      12     125 ..       7     126 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.1e-08
  Glyoxalase_6   6 aadpaalaaFwaaa.lgwevereeaaledpegvgpaaedaatllfqrvpe...........paknrvHldlavedld...aevarlvalGArvlrep 87 
                   +ad+a+  +F++++ l+ ++ +e+    +p  v+++ +++ +l+  +v++           ++  r+ l ++++d++   +  a+l  +G     +p
    KIR61587.1  12 VADMARTLDFYRRLgLDIPAGAEA----EP-HVELTLDNGLRLAWDTVETirsfdpgwtppTGSPRMSLAFRCADPAevdRRWAELTGAGFHGHLPP 103
                   689999*******96688888888....44.45566899****************99998766669*******888511155555666666666677 PP

  Glyoxalase_6  88 rdgthgr...vlaDPeGneFcv 106
                    d  +g+   vl+DPeGn  ++
    KIR61587.1 104 WDAVWGQryaVLHDPEGNGVDL 125
                   77777779**********8776 PP

>> Glyoxalase_2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.2e-05     0.052       7     113 ..      11     125 ..       5     129 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
                   EES-HHHHHHHHHHT.T---EEEE-SSEEEE..TTS-EEEEHHHHHH.----..---S--SS-EEEEEES-...HHHHHHHH..GGGS-EEEEEEE- CS
  Glyoxalase_2   7 vvkdieeskkFYedv.lelkikldfGenvsf..etgfalkedlkeli.nlde..siaeqsnnfeLyFeved...vdaflqklkeaeniellhelkek 94 
                   +v d+ ++ +FY+ + l+ +  ++   +v+   ++g+ l  d  e+i ++d   +  + s  + L F  +d   vd    +l  a+  +   ++   
    KIR61587.1  11 TVADMARTLDFYRRLgLDIPAGAEAEPHVELtlDNGLRLAWDTVETIrSFDPgwTPPTGSPRMSLAFRCADpaeVDRRWAELTGAG-FHGHLPPWDA 106
                   799999******98668888888998898761156666666655555266664466679********9987222555555554444.4445577899 PP

                   TTS-EEEEEE-TT--EEEE CS
  Glyoxalase_2  95 pWgqrvirfyDpDkhiiEi 113
                    Wgqr + + Dp+++ +++
    KIR61587.1 107 VWGQRYAVLHDPEGNGVDL 125
                   9*************98875 PP

>> 3-dmu-9_3-mt  3-demethylubiquinone-9 3-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.9e-05      0.13      68      97 ..      68      97 ..      37     114 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.9e-05
  3-dmu-9_3-mt 68 kfneavSllveckdqeevdrlwnalseegg 97
                  + ++ +Sl  +c d +evdr w++l+  g 
    KIR61587.1 68 TGSPRMSLAFRCADPAEVDRRWAELTGAGF 97
                  557889*******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       156  (0.00870099); expected 358.6 (0.02)
Passed bias filter:                      148  (0.00825478); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 973.07
//
Query:       KIR61588.1  [L=476]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-07   30.0   0.0    7.6e-07   29.1   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    2.7e-05   24.8   0.0    6.6e-05   23.6   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
    0.00027   21.5   0.2     0.0014   19.2   0.2    2.2  1  Methyltransf_11  Methyltransferase domain
     0.0041   17.8   0.1      0.015   16.0   0.1    2.1  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
        1.1    8.6   4.8       0.79    9.2   0.2    2.5  3  Methyltransf_19  S-adenosyl methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   2.1e-10   7.6e-07      10     144 ..     285     439 ..     267     453 .. 0.70

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 2.1e-10
  Methyltransf_23  10 sdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae......kakkaqkdqfdeqeaaepqg................ 81 
                       +++e +l+   ++g vLd+G+++G+ +++++++   v++v+++p+ v+++       +           q      +                
       KIR61588.1 285 ERFVELALTAAGPPGLVLDLGANDGRYARLAARYAGYVVAVEQDPAVVDEVYaalradE-----------Q------Rrvlplvmdladpspgg 361
                      356666666689999***************999988999*****998877534443331...........2......22222233333333345 PP

  Methyltransf_23  82 ..............kfdlIvlrevlehvp.....dppellrqiatllkpgGylllseplaslkedrllldwlylvpagrhis 144
                                    + dl+ +  v +h+      +++ +++q+a+ + pgG+l+++ +  +++ +r+ll +    pa +++ 
       KIR61588.1 362 gwrgveraafatraRADLVLALAVVHHLAigrnvPLTQVVDQLADACLPGGRLVVEFVHPEDPMARRLLAN---KPA-GLFP 439
                      67777777777777**************999854488********************97777766666655...344.4444 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.8e-08   6.6e-05       1      99 []     302     414 ..     302     414 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.8e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsai..edakeklakrennnnnnvelealdlldldgg..............ssfDlvvasnvlhh 78 
                      L++G+++G+++r  +++     +++v+ +p+++  + a+ +  ++++    +++l + +     +g              +  Dlv+a+ v+hh
       KIR61588.1 302 LDLGANDGRYARLAARY--AGYVVAVEQDPAVVdeVYAALRADEQRRVLPLVMDLADPS-----PGggwrgveraafatrARADLVLALAVVHH 388
                      8****************..88888*********44444444444444333344444333.....3345777*********************** PP

  Methyltransf_12  79 l.....kdirevldnirklLkpgGrl 99 
                      l      ++ +v+d++++++ pgGrl
       KIR61588.1 389 LaigrnVPLTQVVDQLADACLPGGRL 414
                      ****877777**************97 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   3.9e-07    0.0014       1      96 []     302     416 ..     302     416 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.9e-07
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-......EEEE.........TTEECCCTSS-T.T-EEEEEEES-CCC-.... CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl......kvef.........vvadaeklpfed.nsfDlvvssevlhhv.... 74 
                      Ld+G+  Gr+a+  a++++ vv+v+ ++++++ + ++ + ++          +             +e+  f+  +  Dlv++  v+hh+    
       KIR61588.1 302 LDLGANDGRYARLAARYAGYVVAVEQDPAVVDEVYAALRADEQrrvlplV--MdladpspggGWRGVERAAFATrARADLVLALAVVHHLaigr 393
                      8**************999*************6664444444433334442..1446666666333444455666479*************7766 PP

                      .CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  75 .edpekalkeiaRvLkpgGllvi 96 
                         + ++++++a  + pgG+lv+
       KIR61588.1 394 nVPLTQVVDQLADACLPGGRLVV 416
                      54899***************986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   4.2e-06     0.015       1      97 []     301     412 ..     301     412 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.2e-06
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBS............S.STTTEEEEEEESTGGGSSHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlp............f.edgsfDlvvssgalhhlsde 80 
                      vLdlG+  Gr+++ +a+    + v++v+ +++ ++++ + +++++  +v  +++d+ d +            f   ++ Dlv++  ++hhl   
       KIR61588.1 301 VLDLGANDGRYARLAARYA--GYVVAVEQDPAVVDEVYAALRADEQrRVLPLVMDLADPSpgggwrgveraaFaTRARADLVLALAVVHHLAIG 392
                      9************999996..9**************9999988666699999999987543555555555553356688999996558886533 PP

                      H...HHHHHHHHHHHEEEEE CS
  Methyltransf_25  81 d...lekalkeiarvLkpgG 97 
                      +   l ++++++a+++ pgG
       KIR61588.1 393 RnvpLTQVVDQLADACLPGG 412
                      21115667777777777776 PP

>> Methyltransf_19  S-adenosyl methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.75   2.7e+03     224     246 ..     195     217 ..     191     230 .. 0.52
   2 ?    0.1   0.4      0.13   4.5e+02      98     134 ..     321     357 ..     312     359 .. 0.83
   3 ?    9.2   0.2   0.00022      0.79      54     122 ..     369     436 ..     359     441 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.75
  Methyltransf_19 224 erffdglelvePGlvevteWrpd 246
                      +r+f+g+  + PG+ +  + +  
       KIR61588.1 195 RRLFTGVRRLLPGVPTHVHLHSA 217
                      55666666666665443333333 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.13
  Methyltransf_19  98 RvvYvDnDPivlaharallestpeGatdyieaDlrdp 134
                       vv v++DP v+    a l+ +++ +   +  Dl dp
       KIR61588.1 321 YVVAVEQDPAVVDEVYAALRADEQRRVLPLVMDLADP 357
                      5999**********99999999997777777777776 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00022
  Methyltransf_19  54 RaflrRavrvlaeeaGirqflDiGtGlPtednvHqvaqrvaPesRvv..YvD.nDPivlaharallestpeG 122
                       af +Ra + l+    +   l iG  +P ++ v q+a +  P+ R+v  +v  +DP+    ar+ll+++p G
       KIR61588.1 369 AAFATRARADLVLALAVVHHLAIGRNVPLTQVVDQLADACLPGGRLVveFVHpEDPM----ARRLLANKPAG 436
                      4788999999999999*****************************884445337887....57777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3503.02
//
Query:       KIR61589.1  [L=686]
Description: sulfatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-21   75.2   0.0    7.5e-19   68.2   0.0    2.1  2  Sulfatase     Sulfatase
    1.8e-08   34.4   0.0    1.9e-05   24.4   0.0    2.2  2  Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosp
  ------ inclusion threshold ------
      0.044   12.4   0.0       0.06   11.9   0.0    1.1  1  DUF229        Protein of unknown function (DUF229)


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0023        13      24      64 ..     226     266 ..     189     289 .. 0.81
   2 !   68.2   0.0   1.3e-22   7.5e-19     161     308 ..     377     528 ..     305     529 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0023
                 CSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHH CS
   Sulfatase  24 attpnldrlaeeglrftnfysaaplcspsraalltgryphn 64 
                 a+ p++++la   + ++n+ + ++ +  +++a+ltgryp+ 
  KIR61589.1 226 ARYPHFAELAGGSTWYRNATGVSGWTPYALPAMLTGRYPAK 266
                 448*****************9999**************986 PP

  == domain 2  score: 68.2 bits;  conditional E-value: 1.3e-22
                 HHHHH..HCCCTSSEEEEEEE-TTSSST...CTCGGHTCCGSTTTTCCCCCCH....HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSS CS
   Sulfatase 161 alefl..larndkpfflylatlapHapp...eapdeyakkyatffddgseaar....qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhg 250
                 ++ fl  l+  d+p + +l++l pHap+   ++ ++ya+      +dg    +     +++  l+ +ey+D lig+ l +L+ +gl+d +lv++t+Dhg
  KIR61589.1 377 FASFLagLRPSDRPTLHFLHLLMPHAPWqflPSGARYAAPED-LPNDG----AgwvdLARRRHLAQLEYTDRLIGETLRTLRATGLYDRALVMVTADHG 470
                 44555756666***************9876666666666632.22233....133449***************************************** PP

                 SCCCGHHTTSSSCTTCSSSHHHHB.EEEEEEETTTSHCEEECSEEEGGGHHHHHHHHTT CS
   Sulfatase 251 asleesngplrggkganayeggtr.vPllvwwpgekaprvseelvshiDlfptildlag 308
                  s ++ ++  rg     a +g++  vP++v  pg+ a rv++   +h+Dl+pt++d a 
  KIR61589.1 471 VSFDN-GAQGRGMDAIRAAAGQVAwVPMFVKEPGQRAGRVDDRNWEHVDLLPTVADYAH 528
                 ***77.7888888888999999977*******************************986 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00036       2.2      19      59 ..     226     265 ..     217     266 .. 0.87
   2 !   24.4   0.0   3.2e-09   1.9e-05     196     238 ..     430     475 ..     330     556 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00036
                   STSHHHHHHHHHSEEESEEE-SSS-SHHHHHHHHHHSS-HH CS
  Phosphodiest  19 ellpnlaaLakegvsapnlrpvfPtlTfpnhaslvTGlyPg 59 
                    + p++a+La  +++++   + +   T+ ++ +++TG+yP+
    KIR61589.1 226 ARYPHFAELAGGSTWYR-NATGVSGWTPYALPAMLTGRYPA 265
                   578**************.56677789**************7 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 3.2e-09
                   H...HHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EEEH CS
  Phosphodiest 196 e...vedalrrvDkaigdLlealderglsaetniilvSDHGmadvs 238
                   +   ++++l++ D+ ig++l+ l+ +gl++   +++++DHG++  +
    KIR61589.1 430 ArrrHLAQLEYTDRLIGETLRTLRATGLYDRALVMVTADHGVSFDN 475
                   2445999**********************************98654 PP

>> DUF229  Protein of unknown function (DUF229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     1e-05      0.06     299     348 ..     426     475 ..     422     512 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1e-05
      DUF229 299 wsnslshdkfnllealDedllkylkklekkgllentlvlllsDHGlrfgk 348
                 w+     + ++ le +D  + + l++l++ gl ++ lv++ +DHG  f++
  KIR61589.1 426 WVDLARRRHLAQLEYTDRLIGETLRTLRATGLYDRALVMVTADHGVSFDN 475
                 666666778899999******************************88875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4576.00
//
Query:       KIR61590.1  [L=427]
Description: hypothetical protein TK50_28950 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     3e-133  444.4   0.0   3.5e-133  444.2   0.0    1.0  1  Citrate_synt  Citrate synthase, C-terminal domain
  ------ inclusion threshold ------
      0.025   14.6   0.0      0.061   13.3   0.0    1.7  1  Mlf1IP        Myelodysplasia-myeloid leukemia factor 1-intera


Domain annotation for each model (and alignments):
>> Citrate_synt  Citrate synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  444.2   0.0  3.9e-137  3.5e-133       1     361 []      44     410 ..      44     410 .. 0.95

  Alignments for each domain:
  == domain 1  score: 444.2 bits;  conditional E-value: 3.9e-137
                   GGTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHHS-HHHHHHHHHHSS---HHHHHHHHHHHHCTTS--HHHHHHHHCSSTTS-HHHHHHHHHHH CS
  Citrate_synt   1 glrgvaaleteisevdgekgelrYRGydieeLaeekssfeevaylLltgelPtkeelkefkeelaearklpekvlealealpkdahpmavlraavsa 97 
                   g+ ++aa+ ++i+++dg++g+lrYRGy+ie+La ekssf ev ylL++gelP +++l+ef+e++++++ l+e++++ ++ +p+dahpmavl++avsa
    KIR61590.1  44 GFVNTAACSSAITYIDGDAGILRYRGYPIEQLA-EKSSFLEVSYLLIYGELPGQQQLDEFSERIRRHSLLHEEMRRFFDGFPRDAHPMAVLSSAVSA 139
                   6789*****************************.8************************************************************** PP

                   HHHHSTTCTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS.--.---TTSSHHHHHHHHHHS.....S---HHHHHHHHHHHHHHS--SSSHHH CS
  Citrate_synt  98 lsaddeeseakeeseeaalrdalkliAklptiaaaiyrarlgrepl.epddklsyaenflymlrg.....kkpdeeeaklldlalvlhaDHelnaST 188
                   +s+++++s +  + ++++  ++++l+Ak+ptia ++y+ + g+ pl +pd++l y+enfl+m++g     ++ d+ +ak+ld++++lhaDHe+n+ST
    KIR61590.1 140 ISTFYQDSLDPFD-SDHVEMSTVRLMAKVPTIASYAYKKSIGQ-PLlYPDNSLGYVENFLRMTFGvpaepYEVDPVMAKVLDMLFILHADHEQNCST 234
                   *****86333333.3445555778*****************97.777***99************999***9************************** PP

                   HHHHHHHTTT--HHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHSSGG.GHHHHHHHHHHTTT.S--TTBC-SSSSS--HHHHHHHHHHHHHHTC.HT CS
  Citrate_synt 189 faarvvaStladlysaiaagigalkGplhgganeavlkmleeigsaeveveeylekvlakek.erlpGfGHrvykksDpRakilkelaeelaee.kg 283
                    ++r+v+S+ a+l+++++ag++al Gplhggan+avl+mle+i+ +  +v+++++kv++k++  +l+GfGHrvyk++DpRa+i+k++a+++  +  +
    KIR61590.1 235 STVRLVGSSNANLFASVSAGVNALFGPLHGGANQAVLEMLEKIQLDGGDVRSFVRKVKDKQDgVKLMGFGHRVYKNYDPRAAIVKKAAQDVLGRmAK 331
                   *******************************************66655***********996699***************************99999 PP

                   HHHHHHHHHHHHHHHHHHHHCHHGCT-EB-THHHHHHHHHHTT--GGGHHHHHHHHHHHHHHHHHHHHH..HT------E CS
  Citrate_synt 284 kdpllklaeeleevapevlkekeeknlypNvDfysgvlyralgipeelftvlfaisRvaGwlAhileql..adnkiiRPr 361
                    dpll++a++lee+a ++  +++ + lypNvDfy+g++y+a+g+p+++ftvlfa++R+ Gw+A+++e l   ++ki RPr
    KIR61590.1 332 PDPLLDIAMQLEEIALADDFFVS-RRLYPNVDFYTGLIYKAMGFPTKMFTVLFALGRLPGWIAQYREMLgdPETKIGRPR 410
                   9**********************.*******************************************87555599****8 PP

>> Mlf1IP  Myelodysplasia-myeloid leukemia factor 1-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.8e-06     0.061      67     143 ..     236     324 ..     112     339 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.8e-06
      Mlf1IP  67 s....ndpnahsfss.Ss.v.mtyskv.gdekpkvyqassstrsapgGiketrravkdsesGlekmaiGhhig....drahvvekkknk 143
                 +     ++na+ f s S  v   +    g  +  v +   + + + g ++   r+vkd ++G++ m  Gh +      ra +v+k  + 
  KIR61590.1 236 TvrlvGSSNANLFASvSAgVnALFGPLhGGANQAVLEMLEKIQLDGGDVRSFVRKVKDKQDGVKLMGFGHRVYknydPRAAIVKKAAQD 324
                 144446677777766422121234444455566777777777666666**********************9963332588888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2699.02
//
Query:       KIR61591.1  [L=472]
Description: glycosyl transferase family 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-36  124.4   0.0    5.5e-36  123.7   0.0    1.3  1  Glycos_transf_1  Glycosyl transferases group 1
    3.6e-34  118.2   5.0      8e-34  117.1   5.0    1.6  1  Glyco_transf_4   Glycosyltransferase Family 4
    8.8e-30  104.3  11.1    8.8e-30  104.3  11.1    2.6  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    4.5e-28   98.4   0.8    1.9e-27   96.3   0.0    2.3  2  Glyco_trans_1_4  Glycosyl transferases group 1
    1.1e-20   74.4   8.5    8.2e-20   71.5   3.8    2.7  2  Glyco_transf_5   Starch synthase catalytic domain
    2.3e-14   53.5   0.0    6.2e-14   52.2   0.0    1.7  1  Glyco_trans_1_2  Glycosyl transferases group 1
     0.0001   22.3   0.0    0.00023   21.2   0.0    1.5  1  Glyco_trans_4_2  Glycosyl transferase 4-like


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.7   0.0   2.2e-39   5.5e-36       9     171 ..     252     413 ..     247     414 .. 0.97

  Alignments for each domain:
  == domain 1  score: 123.7 bits;  conditional E-value: 2.2e-39
                      TTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESS CS
  Glycos_transf_1   9 lgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsis 102
                       +++++ +++ + grl++eKgv++l+  +++l+++ +p ++ vi+G+g+++  l+++++ l+l+ +v + g++  +dl++++ ++d+f++psi+
       KIR61591.1 252 ARFAGDGPLVTFAGRLVYEKGVQHLLAGLPRLRER-HPGLRAVIVGDGPYKPALEAEVHRLGLGGTVSMPGFLGGTDLPAVMAASDCFAVPSIY 344
                      56788999*************************98.********************************************************** PP

                      BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHHH CS
  Glycos_transf_1 103 EgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenark 171
                      E+fG+v+lE  aag p  +  +gg+ae+v++g+tG  ++p +++ l ea+  ll+d e++++l ++ar+
       KIR61591.1 345 EPFGMVALEGAAAGAPLAVASTGGLAEIVEPGVTGMTFAPQDPAGLTEAVHALLSDTERARALARRARR 413
                      ******************************************************************996 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1   5.0   3.1e-37     8e-34       1     170 []      60     239 ..      60     239 .. 0.83

  Alignments for each domain:
  == domain 1  score: 117.1 bits;  conditional E-value: 3.1e-37
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeev.......elvvrvprvplpllkrllrslaflrrlrrllkre....kpDvvHahspaal 84 
                     vGG +rhv+ L+ aLa++GheVtvvt++ dg++ ee        +   +++++pl     l +++af   l r++ r      +Dv+Hah++  +
      KIR61591.1  60 VGGLGRHVHALSVALAAAGHEVTVVTRHADGAPLEEYadgvrvlRAAEDPVAFPLATGSLLAWTMAFNHTLTRAALRAtesgSYDVIHAHDWLVA 154
                     7*********************************999999877655555555555555555555555444433333333666**********999 PP

  Glyco_transf_4  85 gaallalrrrlgiplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDler 170
                       a+  lr +l+iplV t+H +++ r+ ++     +r ++ +e++l   ++rvi++S +++de+ ++++vp++++ V+pnGv + r
      KIR61591.1 155 HTAMT-LRDHLDIPLVSTIHATEAGRHQGWLPEEMNRTIHGVEQWLSGESNRVIVCSAYMRDEVGALFDVPAARVDVVPNGVEPHR 239
                     88875.5668*************98888999999************************************************9875 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3  11.1   3.4e-33   8.8e-30       1     160 []      61     234 ..      61     234 .. 0.82
   2 ?   -0.1   5.3      0.45   1.1e+03      22     129 ..     293     423 ..     269     441 .. 0.48

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 3.4e-33
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgapeleedgvrvhrlpvprrpsplad...laalral.....rrll.rqrrerpdvvhahsptag 85 
                      gG gr+v++l+ aLaa+GheVtv+t+++++++ e+ +dgvrv r    +   pla+   la++ a+     r++l + ++  +dv+hah+++ +
       KIR61591.1  61 GGLGRHVHALSVALAAAGHEVTVVTRHADGAPLEEYADGVRVLRAAEDPVAFPLATgslLAWTMAFnhtltRAALrATESGSYDVIHAHDWLVA 154
                      8*****************************************976533332223322223344333333344444566**************99 PP

  Glyco_trans_4_4  86 laarlarrrrgiplvvtlhglllrrgsgavrrly.ral...errllrradavlvvseaeaeelra.lgvpadrvvvvpng 160
                        a+ +r   +iplv t+h+++  r++g+++  + r++   e++l     +v+v s+++++e+ a + vpa+rv+vvpng
       KIR61591.1 155 HTAMTLRDHLDIPLVSTIHATEAGRHQGWLPEEMnRTIhgvEQWLSGESNRVIVCSAYMRDEVGAlFDVPAARVDVVPNG 234
                      9999999788**********99999999999888544455599**********************888***********8 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.45
  Glyco_trans_4_4  22 tvltpapapgapeleedgvrvhrlpvprrps.........pladlaal..ralrrllrqrrerpdvvhahsptaglaarlarrrrgiplvvtl. 103
                      +++ ++p+ +a       ++vhrl ++ + s         ++a +aa+  +a+ ++     e++  v +++  ag++ ++a+ + g+  +v++ 
       KIR61591.1 293 VIVGDGPYKPAL-----EAEVHRLGLGGTVSmpgflggtdLPAVMAASdcFAVPSIY----EPFGMVALEGAAAGAPLAVAS-TGGLAEIVEPg 376
                      444444444444.....3455555544443211111111133333322224555554....677777777776777677777.66777777775 PP

  Glyco_trans_4_4 104 ..................hgll..lrrgsgavrrlyral.errllrr 129
                                        h+ll  ++r  + +rr++r++ e++ ++ 
       KIR61591.1 377 vtgmtfapqdpaglteavHALLsdTERARALARRARRMVhEQYGWAA 423
                      55555555555555554444331122223444444444443333333 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.85   2.2e+03      87     131 ..      73     119 ..      68     121 .. 0.64
   2 !   96.3   0.0   7.4e-31   1.9e-27       2     134 .]     259     400 ..     258     400 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.85
                      HHHHHHTT-EEEE-TGGG..TTT--.TTSSEE--TT-HHHHHHHHHHH CS
  Glyco_trans_1_4  87 llEamaaglpvVatdvgg..iaevv.gengllvppgdpealaeailrL 131
                      +l a+ +++ vV+  + g  ++e+  g+  +l +++dp a+  a   L
       KIR61591.1  73 ALAAAGHEVTVVTRHADGapLEEYAdGVR-VLRAAEDPVAFPLATGSL 119
                      67788888888888887633345444433.566777888886666555 PP

  == domain 2  score: 96.3 bits;  conditional E-value: 7.4e-31
                      EEEEEES---GG.GTHHHHHHHHHHHH.HH..EEEEEES---...HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--..---SHH CS
  Glyco_trans_1_4   2 pvilfvGrleenvkgvdllleavpllrkkd..vrlvivGdgp.rpeeleelaa..gleerveftGfv..edlaellaaadvfvaPs..egfglk 86 
                      p + f Grl+  +kgv+ ll  +p+lr+++  +r vivGdgp +p +le++++  gl  +v++ Gf+  +dl++++aa+d+f +Ps  e fg++
       KIR61591.1 259 PLVTFAGRLV-YEKGVQHLLAGLPRLRERHpgLRAVIVGDGPyKP-ALEAEVHrlGLGGTVSMPGFLggTDLPAVMAASDCFAVPSiyEPFGMV 350
                      6799*****5.45**************99559**********776.9*999966999999********************************** PP

                      HHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  87 llEamaaglpvVatdvggiaevv..gengllvppgdpealaeailrLled 134
                      +lE +aag p  + ++gg+ae+v  g++g+ ++p+dp+ l+ea+ +Ll+d
       KIR61591.1 351 ALEGAAAGAPLAVASTGGLAEIVepGVTGMTFAPQDPAGLTEAVHALLSD 400
                      ***********999999*******************************97 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   3.8   3.2e-23   8.2e-20       1     229 [.      47     217 ..      47     221 .. 0.74
   2 ?   -2.1   0.2         1   2.5e+03      12      22 ..     361     373 ..     349     375 .. 0.76

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 3.2e-23
  Glyco_transf_5   1 kilfvasEvaplaktGGLadvvgaLpkaLaklghdvrvilPrygaikeekkeleevaelskaaedevevevekvkvaklkkdgvdvyf.ldnpef 94 
                     +il++++E++p + +GGL+++v+aL+ aLa++gh+v+v++ + +  + e+                             ++dgv+v+   ++p  
      KIR61591.1  47 RILMLSWEYPP-VLVGGLGRHVHALSVALAAAGHEVTVVTRHADGAPLEE-----------------------------YADGVRVLRaAEDPVA 111
                     7**********.****************************8884444432.............................4468888886666666 PP

  Glyco_transf_5  95 fdreglYgdkgedyednaerfalfsraalelleklgwkpdvihahDWhtalvpallkelykerglfkkiktvftiHNlayqgrfpkdelaalglp 189
                     f        +g+  + +      + raal++ e      dvihahDW  a+ ++ l+++        +i++v tiH ++  ++ +       +lp
      KIR61591.1 112 FPLA-----TGSLLAWTMAFNHTLTRAALRATESG--SYDVIHAHDWLVAHTAMTLRDHL-------DIPLVSTIHATEAGRHQG-------WLP 185
                     6321.....13333445555557888888888883..69*******************95.......4*********98876666.......455 PP

  Glyco_transf_5 190 aedfekldglefygkvnflk.agivyadavttVSptyakEi 229
                     +         e +++++ ++ +   ++++v+ +S ++ +E+
      KIR61591.1 186 E---------EMNRTIHGVEqWLSGESNRVIVCSAYMRDEV 217
                     2.........3344555555566667777777777777776 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1
  Glyco_transf_5  12 l..aktGGLadvv 22 
                     l  a tGGLa++v
      KIR61591.1 361 LavASTGGLAEIV 373
                     44489*****987 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   2.4e-17   6.2e-14       5      89 ..     341     427 ..     334     430 .. 0.95

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 2.4e-17
  Glyco_trans_1_2   5 psrsespnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydhraeq 89 
                      ps +e + ++ +E aa+Ga++ + ++ gl+e+++pg ++++f+  d++ l e++ +ll++ e++ra+a++ar+ v++++ ++  a++
       KIR61591.1 341 PSIYEPFGMVALEGAAAGAPLAVASTGGLAEIVEPGVTGMTFApqDPAGLTEAVHALLSDTERARALARRARRMVHEQYGWAAIARR 427
                      788899*************999999********************************************************998876 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   8.9e-08   0.00023      12     109 ..      66     175 ..      58     198 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 8.9e-08
  Glyco_trans_4_2  12 htlrlakeLakrgyeVhvitp.kkgakdeleaegihvhrl.kvd.rkgpleylka............fklkklikkikPDvvhahyakpygllg 90 
                      h+  l  +La++g+eV+v+t+  +ga  e+ a+g++v r  + d +++pl + ++            ++  +  +  ++Dv+hah    ++  +
       KIR61591.1  66 HVHALSVALAAAGHEVTVVTRhADGAPLEEYADGVRVLRAaE-DpVAFPLATGSLlawtmafnhtltRAALRATESGSYDVIHAHDWL-VAHTA 157
                      77788999*************6666699************54.44555333322112344566555456677889999********54.44444 PP

  Glyco_trans_4_2  91 slaarlsgvipvvlsvwGl 109
                        + r +  ip+v +++ +
       KIR61591.1 158 MTL-RDHLDIPLVSTIHAT 175
                      333.545559999999966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3327.84
//
Query:       KIR61592.1  [L=706]
Description: glycogen debranching protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-20   71.5   0.1    1.7e-19   69.9   0.0    1.9  2  CBM_48           Carbohydrate-binding module 48 (Isoamylase N
    1.8e-14   54.0   0.0    7.6e-07   29.0   0.0    2.3  2  Alpha-amylase    Alpha amylase, catalytic domain
  ------ inclusion threshold ------
       0.11   13.0   0.0          1   10.0   0.0    2.4  2  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain


Domain annotation for each model (and alignments):
>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   2.8e-23   1.7e-19       1      84 []      10      98 ..      10      98 .. 0.91
   2 ?   -2.6   0.0       1.2   7.3e+03      18      74 ..     107     124 ..     101     141 .. 0.48

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 2.8e-23
                TSEEEEESSCEEEEEEEE-TTSSEEEEEECGTT..TEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEEEETT....S....CEEEE--TT- CS
      CBM_48  1 plGahvsedekgvnfrvwapnAekVslvldfnn..wdaeeiplkrrrtggvWelflpgdlphgslrYkyrvkgps....g....ekklllDPya 84
                plGa+ +++  g+nf+++++ Ae+V+l+l+++     +++++l+ + + +vW++++p  +++g +rY+yrv+gp+    g    ++klllDPya
  KIR61592.1 10 PLGATHDGM--GTNFAIFSEVAERVELCLFDEWdtGAERRVELR-EVDAYVWHCYIP-GIEPG-QRYGYRVHGPWdpanGircnPNKLLLDPYA 98
                79****999..********************998888999****.69**********.55558.6**********887747778*********8 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.2
                 E-TTSSEEEEEECGTTTEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEEEETT...S CS
      CBM_48  18 wapnAekVslvldfnnwdaeeiplkrrrtggvWelflpgdlphgslrYkyrvkgps...g 74 
                 w+p                                          ++Y y+v g +   +
  KIR61592.1 107 WNP------------------------------------------AVYDYEVGGDEnrmS 124
                 333..........................................466666655553220 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.3e-10   7.6e-07      10      82 ..     191     280 ..     189     308 .. 0.80
   2 !   23.1   0.0     8e-09   4.8e-05     123     333 ..     296     533 ..     283     537 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.3e-10
                    CCCCCCCT-SCEEE-B-CE..........-S-TTTTSS-SCECCE-CCC......-.-CCCCCCHHHHHHCTT-EEEEEE--SC--TTSC CS
  Alpha-amylase  10 LdYlkeLGvtaiwlsPifk..........spqadhgYdiadytkidpef......G.tnedlkeLiskahekgikvilDlVvNHtsdehe 82 
                    ++Y + LGvta+ l P+ +             ++ gY +  + + +  +      G   +++  +++ +h+ gi vilD+V NHt++ ++
     KIR61592.1 191 IEYFQRLGVTAVELMPVHQfvhdhrladlGLRNYWGYNTIGFFAPHHGYaalgglGqQVQEFRGMVKTLHAAGIEVILDVVYNHTAEGNH 280
                    78************************999556899***99999877776444322333589999*********************98665 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 8e-09
                    CEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTTTCCCC................................. CS
  Alpha-amylase 123 weydekaqeyylhlflkklpdLnteneevrkelkdvvkfwlekg.idGfRlDvvkhvskveal................................. 184
                    ++ +e+   y++   + +   Ln ++++  + + d +++w+ +  +dGfR D +  ++ +  +                                 
     KIR61592.1 296 YRLSEEDRRYFV-DYTGTGNSLNVRSPHSLQLIMDSLRYWVTEMhVDGFRFDLAATLARE--Fyevdrlstffevvqqdpvvsqvkliaepwdvgp 388
                    555555554433.334455789*******************9999*********999983..3468999*************************** PP

                    .....HCCHCCHHHHHHHHHHHTC..CGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS CS
  Alpha-amylase 185 .....esngeflheftqalnetva..srkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakklkellkkwlkal 273
                          +  + ++e++ +   tv+   r e  t++E+ s  s  + +y+ ++r  ++   ++ ++  + ++   ++l s++ k+ ++  +++++  
     KIR61592.1 389 ggyqvGNFPPLWTEWNGKYRDTVRdfWRGEPATLAEFASRISGSADLYQDDGRRPFH---SINFVTCHDGFT-LNDLVSYNDKHNEANGEDNRDGE 480
                    **987777899*****999999988889999***********************999...555555566665.56778877777777788888887 PP

                    -CCCTTCEEES--TTS--HHHHTTSSTTTTHHHHHHHHHCCCTSSSEEEEETTCCCT--- CS
  Alpha-amylase 274 eeaaeeavtflgnHDqeRilsrlgddsaeaekklklaaillltlrGvpviYyGeEigmtg 333
                     ++ +++  + g  D + +l   ++++       +++++ l++++Gvp+   G+E+g t 
     KIR61592.1 481 GHNRSWNCGVEGETDDPGVLALRQRQR-------RNFLATLILSQGVPMLGHGDELGRTQ 533
                    7899****************9988888.......788899999*************9875 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00017         1      54      80 ..      50      76 ..      15      85 .. 0.85
   2 ?   -0.6   0.0      0.35   2.1e+03      75      90 ..     112     127 ..     109     130 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00017
  Pur_ac_phosph_N 54 tnyksgyshkatltgLepgttYyYrvg 80
                       +++ y++++ + g epg++Y Yrv 
       KIR61592.1 50 LREVDAYVWHCYIPGIEPGQRYGYRVH 76
                     568899*******************95 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.35
  Pur_ac_phosph_N  75 YyYrvgddeggwSevy 90 
                      Y Y vg de+++Se+ 
       KIR61592.1 112 YDYEVGGDENRMSETD 127
                      99****9999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 4596.65
//
Query:       KIR61593.1  [L=788]
Description: maltooligosyl trehalose synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-18   66.1   0.0    1.7e-15   57.4   0.0    2.8  2  Alpha-amylase  Alpha amylase, catalytic domain


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   9.7e-20   1.7e-15      12     173 ..      35     242 ..      29     253 .. 0.78
   2 !    5.1   0.0   0.00077        14     312     329 ..     606     623 ..     587     630 .. 0.89

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 9.7e-20
                    CCCCCT-SCEEE-B-CE.-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCC.....CHCCHHSTTSGGGCCC-. CS
  Alpha-amylase  12 YlkeLGvtaiwlsPifk.spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehew.....fkeslkkkgepkrdyyi. 100
                    Yl +LGvt ++ +P  +  p ++hgYd+ d ++++pe G  ++  +L++++++ g+ +++D+V+NH + +         +  ++  ++ ++++++ 
     KIR61593.1  35 YLADLGVTHLYSAPLLTaTPGSQHGYDVVDHRAVNPELGGEAARVRLVRALRAVGLGLVVDIVPNHAGVARPAanpawWDVLRRGRDSAYARWFDi 130
                    **************9875899**********************************************98877622222444455555556665432 PP

                    .E............................................ESS-STTC-..TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCC CS
  Alpha-amylase 101 .wkegk......................................eekeppnnwks..lfdgsaweydekaqeyylhlflkklpdLnteneevrkel 155
                     w +g+                                      +    p + +   + +  +w+  +    y  +  +++l+ L  e +ev  + 
     KIR61593.1 131 dWDRGRlllpvladtpdalddlkiadgelryhehrfpiadgtgdG---SPRQVHDrqHYELVSWRRGDRELTYRRFFAVADLAGLRVEDPEVFAAT 223
                    255555999999999999999999999999999999996654321...22222221144444555545555677777889**************** PP

                    CCCCCCCCTTT.-SEEEET CS
  Alpha-amylase 156 kdvvkfwlekg.idGfRlD 173
                       v +w   g +dG+R+D
     KIR61593.1 224 HAEVLRWAAAGeVDGIRVD 242
                    *98888999988******9 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.00077
                    HCCCTSSSEEEEETTCCC CS
  Alpha-amylase 312 illltlrGvpviYyGeEi 329
                    +++l ++Gvp +Y+G+E+
     KIR61593.1 606 LVQLAMPGVPDTYQGTEL 623
                    67999************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 4744.62
//
Query:       KIR61594.1  [L=577]
Description: malto-oligosyltrehalose trehalohydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-19   70.4   0.0    8.7e-12   45.2   0.0    3.0  3  Alpha-amylase  Alpha amylase, catalytic domain
    9.1e-16   58.0   2.0    1.5e-15   57.2   0.5    2.2  2  DUF3459        Domain of unknown function (DUF3459)
    3.8e-05   24.0   0.0    7.9e-05   22.9   0.0    1.5  1  CBM_48         Carbohydrate-binding module 48 (Isoamylase N-t
  ------ inclusion threshold ------
       0.16   11.1   0.1       0.36    9.9   0.1    1.6  1  GHL10          Glycosyl hydrolase-like 10


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   1.9e-15   8.7e-12       1      91 [.     111     205 ..     111     218 .. 0.89
   2 !   18.4   0.0   2.9e-07    0.0013     148     202 ..     220     271 ..     214     298 .. 0.78
   3 ?    3.1   0.0     0.013        57     279     331 ..     370     423 ..     360     428 .. 0.81

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 1.9e-15
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE.-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCC...CHCCHHST CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifk.spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehew...fkeslkkk 91 
                    G+++  ie+Ld l +LGv+ + l P+ + + +++ gYd   + + ++ +G  + lk+ +++ah++g+ vilD+V NH + + ++   f ++l++ 
     KIR61594.1 111 GTFDAAIERLDHLVDLGVDLVELLPVNAfNGEHNWGYDGVCWFAPHEPYGGPDGLKRFVDAAHARGLGVILDVVYNHFGPSGAYapmFAPYLTER 205
                    5666679*******************99777899*********************************************9999866666666655 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 2.9e-07
                    TCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHT CS
  Alpha-amylase 148 neevrkelkdvvkfwlekg.idGfRlDvvkhvskvealesngeflheftqalnetv 202
                    ++evr+++ d + +wl++  +dG+RlD+v+ ++     ++ ++ l+e++ a+++  
     KIR61594.1 220 SDEVRRYIVDSIVMWLRDYhVDGLRLDAVHAMPD----TRATHLLEEIAVAVEALS 271
                    579*******9999*99988************99....556666666666666554 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.013
                    TCEEES--TTS--HHHHTTSSTTTT...HHHHHHHHHCCCTSSSEEEEETTCCCT- CS
  Alpha-amylase 279 eavtflgnHDqeRilsrlgddsaea...ekklklaaillltlrGvpviYyGeEigm 331
                    + v +l+nHDq  i++r+  d+ +a      l++ a+lllt + +p+ + GeE   
     KIR61594.1 370 RFVAYLQNHDQ--IGNRATGDRISAtlsPALLRVGATLLLTGPFTPMLFMGEEWAA 423
                    56789*****9..8999988887777766677888899999999********9765 PP

>> DUF3459  Domain of unknown function (DUF3459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.6   1.2e+04      26      45 ..       5      24 ..       3      29 .. 0.72
   2 !   57.2   0.5   3.4e-19   1.5e-15       1      90 [.     490     574 ..     490     575 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.6
                EEEECTCEEEEEEEETTEEE CS
     DUF3459 26 avlgdgallvrwrlgdgrll 45
                +v +++a  vr rl+++++ 
  KIR61594.1  5 TVWAPQAARVRLRLAGDDDH 24
                67788888889898766654 PP

  == domain 2  score: 57.2 bits;  conditional E-value: 3.4e-19
                 HHHHHHHHHHHHCCCTT--CGGEEEEEEECTCEEEEEEEETTEEEEEEEE-SSCGCCS-SS---SEEEEECT--S.....SSEE-TTEEEE CS
     DUF3459   1 lyrdLLaLRreePaLadarrgglevavlgdgallvrwrlgdgrllrllaNLgdepvtlppegaagkllfsseaaragg.dagrlppesvvv 90 
                 +yr+L+aLR+ +P+L+d+r ++++v   + +++lv++r    ++  ++aNL   p++++ +g+a+++l+++e++++ + d+++lppes++v
  KIR61594.1 490 FYRRLIALRKSDPDLSDPRLDAVDV--RHGDQFLVMHR----GERMVVANLAGRPQRITLPGVARRVLLATEEGVSVTrDRIELPPESAAV 574
                 7***********************7..78999******....3556*******99999999**************999**********998 PP

>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.8e-08   7.9e-05      13      69 ..       2      51 ..       1      62 [. 0.87

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.8e-08
                EEEEEE-TTSSEEEEEECGTTTEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEE CS
      CBM_48 13 vnfrvwapnAekVslvldfnnwdaeeiplkrrrtggvWelflpgdlphgslrYkyrv 69
                ++f+vwap+A +V+l l  ++     +++++ + gg+W + +pg+ p g+  Y++ +
  KIR61594.1  2 TEFTVWAPQAARVRLRLAGDDD----HEMRP-EPGGWWRAEVPGAGP-GT-DYAFVL 51
                68***************99998....99**7.9**********8777.64.999865 PP

>> GHL10  Glycosyl hydrolase-like 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1     8e-05      0.36     130     168 ..     214     253 ..     157     263 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 8e-05
       GHL10 130 wln.PliPevqdfitklvvevvkrYdvDgvqlDDyfylpe 168
                  l+ P   ev+ +i+  +v   + Y vDg++lD   ++p+
  KIR61594.1 214 NLDgPHSDEVRRYIVDSIVMWLRDYHVDGLRLDAVHAMPD 253
                 44438889*************************8777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4161.26
//
Query:       KIR61595.1  [L=77]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-18   63.8   0.2    9.2e-18   63.7   0.2    1.0  1  GntR            Bacterial regulatory proteins, gntR family
    5.7e-05   22.7   0.0    8.9e-05   22.1   0.0    1.3  1  HTH_41          Helix-turn-helix domain
    6.3e-05   22.8   0.0    7.8e-05   22.5   0.0    1.2  1  HTH_11          HTH domain
    0.00041   20.3   0.0    0.00064   19.6   0.0    1.3  1  HTH_36          Helix-turn-helix domain
     0.0054   16.6   0.5     0.0085   16.0   0.4    1.4  1  MarR_2          MarR family
       0.01   15.8   0.4        1.2    9.2   0.1    2.1  2  Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
  ------ inclusion threshold ------
      0.013   15.9   0.1      0.014   15.7   0.1    1.2  1  Rrf2            Transcriptional regulator
      0.021   14.4   0.0      0.029   13.9   0.0    1.2  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.024   14.5   0.0      0.039   13.8   0.0    1.3  1  TrmB            Sugar-specific transcriptional regulator TrmB
      0.026   14.2   0.0      0.028   14.1   0.0    1.1  1  RP-C            Replication protein C N-terminal domain
      0.048   13.6   0.4      0.052   13.5   0.4    1.3  1  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.069   13.3   0.2       0.11   12.7   0.2    1.3  1  AbiEi_4         Transcriptional regulator, AbiEi antitoxin
      0.099   12.8   0.1       0.15   12.2   0.1    1.3  1  HTH_28          Helix-turn-helix domain
        0.1   12.7   0.1       0.13   12.3   0.1    1.3  1  HTH_20          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.2   7.2e-21   9.2e-18       2      64 .]      11      73 ..      10      73 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 7.2e-21
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                y q++  L+ +  +g l+p ++LPse++L++++gVsr tvR A+r L  +glv+   grGt+V
  KIR61595.1 11 YVQLAGLLTKEMEAGKLKPRQPLPSESHLQQQYGVSRGTVRAAIRLLRDRGLVVTSTGRGTYV 73
                7899999*******************************************************9 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   6.9e-08   8.9e-05      10      45 ..      37      70 ..      32      73 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 6.9e-08
      HTH_41 10 eelakeleLSvGlvQkALklLeddkaislerrGrlG 45
                + l +++++S+G+v +A+ lL d + + ++  Gr G
  KIR61595.1 37 SHLQQQYGVSRGTVRAAIRLLRDRGLVVTS-TGR-G 70
                678899*******************99764.455.5 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   6.1e-08   7.8e-05      20      51 ..      38      69 ..      27      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 6.1e-08
      HTH_11 20 eLAeeLnvSrrtvrrdIkaLeelgvpIesepg 51
                 L ++ +vSr tvr  I+ L++ g+ ++s+ +
  KIR61595.1 38 HLQQQYGVSRGTVRAAIRLLRDRGLVVTSTGR 69
                699*********************99999876 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     5e-07   0.00064      26      55 .]      34      63 ..      28      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5e-07
      HTH_36 26 psqetlakrlglsknTvsraikeLeqlGyi 55
                ps + l++++g+s+ Tv+ ai++L++ G++
  KIR61595.1 34 PSESHLQQQYGVSRGTVRAAIRLLRDRGLV 63
                78899**********************985 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.4   6.6e-06    0.0085      27      56 ..      39      68 ..      24      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.6e-06
                HHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 27 larrlglsksavsrilkrLvaaGLverrpg 56
                l +  g+s+++v  +++ L ++GLv++++g
  KIR61595.1 39 LQQQYGVSRGTVRAAIRLLRDRGLVVTSTG 68
                666779**********************87 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.012        16      22      39 ..       8      29 ..       1      33 [. 0.82
   2 !    9.2   0.1    0.0009       1.2       7      28 ..      56      76 ..      33      77 .] 0.89

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.012
                    -EEEEEE-GGGSSST....--T CS
  Prot_ATP_ID_OB 22 eevvvslagavprem....Lrp 39
                    + ++v lag++ +em    L+p
      KIR61595.1  8 VAFYVQLAGLLTKEMeagkLKP 29
                    678**********998888877 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0009
                    E-TTSSEEEEE-TTS-EEEEEE CS
  Prot_ATP_ID_OB  7 vlddteraiVktssdeevvvsl 28
                    +l d ++++V+++++ ++vv +
      KIR61595.1 56 LLRD-RGLVVTSTGRGTYVVDR 76
                    5667.999***********976 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.1   1.1e-05     0.014      26      66 ..      34      73 ..      18      77 .] 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-05
                B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEE CS
        Rrf2 26 vsseeiaerqnispsylekilakLrkaglvksvrGkgGGyr 66
                 s +++ +++++s+  ++  ++ Lr  glv +  G+ G y+
  KIR61595.1 34 PSESHLQQQYGVSRGTVRAAIRLLRDRGLVVTSTGR-GTYV 73
                344679999**************************9.7776 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.3e-05     0.029      23      47 ..      39      63 ..      35      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-05
      HTH_24 23 LAerlglSpstvnrrlkrLeeeGlI 47
                L ++ g+S++tv++ ++ L + Gl+
  KIR61595.1 39 LQQQYGVSRGTVRAAIRLLRDRGLV 63
                66788******************98 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     3e-05     0.039      27      58 ..      38      69 ..      34      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3e-05
                HHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 27 eiaeelgvprskvYevLrsLedkGlVerekgr 58
                 + ++ gv+r +v  ++r L d+GlV ++ gr
  KIR61595.1 38 HLQQQYGVSRGTVRAAIRLLRDRGLVVTSTGR 69
                577899********************999987 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.2e-05     0.028      72     103 ..      34      65 ..      14      69 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-05
        RP-C  72 psNaqLsralglsestlrrhlaaLveaGliir 103
                 ps   L+++ g+s+ t+r  ++ L + Gl++ 
  KIR61595.1  34 PSESHLQQQYGVSRGTVRAAIRLLRDRGLVVT 65 
                 999**************************986 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   4.1e-05     0.052      31      62 ..      43      76 ..      13      77 .] 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.1e-05
                TTSSHHHHHHHHHHHHHTTSEE..ETEEEEES-H CS
   HTH_Crp_2 31 lGltretvsrilseLkreglis..rgrririldl 62
                 G++r tv  +++ L+++gl+   +gr+  + d+
  KIR61595.1 43 YGVSRGTVRAAIRLLRDRGLVVtsTGRGTYVVDR 76
                69*******************9644554666665 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   8.2e-05      0.11      23      47 ..      44      73 ..      37      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.2e-05
     AbiEi_4 23 Gispsa....lrrLvrkGwLvrlr.rGvYa 47
                G+s+ +    +r L+++G++v    rG+Y+
  KIR61595.1 44 GVSRGTvraaIRLLRDRGLVVTSTgRGTYV 73
                6777555777*******************8 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00012      0.15      20      41 ..      41      62 ..      34      70 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
      HTH_28 20 relgisrrtvyrWikryeegGi 41
                +++g+sr tv+  i+ ++  G+
  KIR61595.1 41 QQYGVSRGTVRAAIRLLRDRGL 62
                789**************99886 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1    0.0001      0.13      26      58 ..      35      67 ..      13      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
                -HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEEC CS
      HTH_20 26 taselaerldlskntlsyHLrvLeeagLvevvr 58
                + s l ++ ++s+ t++  +r L++ gLv + +
  KIR61595.1 35 SESHLQQQYGVSRGTVRAAIRLLRDRGLVVTST 67
                5677888899******************87655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 543.10
//
Query:       KIR61596.1  [L=404]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-12   48.1   4.8    1.1e-12   48.1   4.8    4.3  4  HTH_31    Helix-turn-helix domain
     0.0052   16.8   0.2      0.015   15.4   0.0    1.9  2  HTH_3     Helix-turn-helix
  ------ inclusion threshold ------
      0.021   14.9   0.0      0.039   14.0   0.0    1.4  1  HTH_19    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   4.8   1.8e-16   1.1e-12       2      58 ..       8      64 ..       7      69 .. 0.96
   2 ?   -1.2   0.1      0.45   2.7e+03      33      58 ..     132     156 ..     121     162 .. 0.71
   3 ?   -0.7   1.2       0.3   1.8e+03      43      55 ..     204     216 ..     178     224 .. 0.59
   4 ?   -2.0   0.4      0.78   4.6e+03      44      57 ..     390     403 ..     376     404 .] 0.69

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 1.8e-16
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldp 58
                +G++++++R+r++L+q+  A+rlg s+s++ ++E+G r + + av+ ++a++l++dp
  KIR61596.1  8 IGRRVARWRARRRLTQQMFADRLGRSKSWVDKVERGVRALDRYAVIQQVAEVLRVDP 64
                79*****************************************************98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.45
      HTH_31  33 rlEqGrrgrpspavlealaralgldp 58 
                 rl  +++  +++a+ e l++a++ + 
  KIR61596.1 132 RLLHAAQ-SVREAQPELLVQAYRITS 156
                 5666667.477777788888888765 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.3
      HTH_31  43 spavlealaralg 55 
                 ++a ++ala a++
  KIR61596.1 204 RLALVAALAAAHR 216
                 4455556665555 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.78
      HTH_31  44 pavlealaralgld 57 
                 pa +++la ++gl+
  KIR61596.1 390 PAGVARLAALVGLS 403
                 55667777777765 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.5e-06     0.015       3      52 ..      14      64 ..      12      67 .. 0.84
   2 ?   -3.4   0.0       1.8   1.1e+04      15      23 ..     396     404 .]     393     404 .] 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.5e-06
                HHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCS.BHHHHHHHHHHHTSEH CS
       HTH_3  3 elRkqlglsqeeLAeklGvsrstisriEnGernP.sletlkklakaLgvsl 52
                ++R  + l+q+++A++lG s+s + + E+G r+  +  +++ +a++L v++
  KIR61596.1 14 RWRARRRLTQQMFADRLGRSKSWVDKVERGVRALdRYAVIQQVAEVLRVDP 64
                6799999***********************666515789999999999887 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.8
                 HHHHHTSSH CS
       HTH_3  15 LAeklGvsr 23 
                 LA+++G+sr
  KIR61596.1 396 LAALVGLSR 404
                 899999997 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.6e-06     0.039       1      55 [.       9      63 ..       9      69 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.6e-06
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aelllkiaealgid 55
                G+r+ + R  + ltq++ a+rlg s+s   + E g +  ++ + +++++ae l +d
  KIR61596.1  9 GRRVARWRARRRLTQQMFADRLGRSKSWVDKVERGVR-ALDrYAVIQQVAEVLRVD 63
                99*********************************99.777799999999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3040.61
//
Query:       KIR61597.1  [L=548]
Description: hypothetical protein TK50_28985 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-26   89.9  39.3    1.8e-09   37.6   6.9    7.0  8  Pentapeptide_3  Pentapeptide repeats (9 copies)
    4.6e-06   26.2  15.3     0.0015   18.1   1.2    5.0  5  Pentapeptide    Pentapeptide repeats (8 copies)
    9.6e-05   22.5   0.6        1.2    9.4   0.0    3.4  3  Pentapeptide_4  Pentapeptide repeats (9 copies)
  ------ inclusion threshold ------
      0.049   14.0   7.9      0.081   13.3   0.3    3.1  3  HEAT_2          HEAT repeats
       0.12   12.6   1.8        1.1    9.7   0.0    3.2  3  HEAT            HEAT repeat


Domain annotation for each model (and alignments):
>> Pentapeptide_3  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.074   2.6e+02      30      47 ..      92     108 ..      91     109 .. 0.91
   2 !   27.2   4.0   8.7e-10   3.1e-06       8      47 ..     102     140 ..      95     141 .. 0.83
   3 !   37.6   6.9   5.1e-13   1.8e-09       3      48 .]     107     152 ..     105     152 .. 0.95
   4 !   30.0   7.5   1.2e-10   4.4e-07       1      46 [.     137     183 ..     137     184 .. 0.95
   5 !   26.1   0.1   1.9e-09     7e-06       3      40 ..     234     272 ..     233     278 .. 0.62
   6 ?   -0.9   0.0      0.53   1.9e+03      10      21 ..     281     292 ..     274     293 .. 0.75
   7 ?    1.5   0.0     0.097   3.5e+02      30      47 ..     457     473 ..     451     474 .. 0.88
   8 !   14.8   8.4   6.8e-06     0.024       2      47 ..     471     521 ..     470     525 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.074
  Pentapeptide_3  30 sadFsgarFtgdvdFsga 47 
                     ++d++ga+   d+d++g+
      KIR61597.1  92 GVDLAGATLV-DADLGGC 108
                     5899*****9.****998 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 8.7e-10
  Pentapeptide_3   8 gaadFrgatFsgaasFsnadF.gsadFsgarFtgdvdFsga 47 
                     +a d+ g+   ga +F++a+F g+ +F+garF g++ F +a
      KIR61597.1 102 DA-DLGGCALAGA-RFDDARFlGTTSFAGARFAGEAIFARA 140
                     55.8999999999.999999999999999999999999876 PP

  == domain 3  score: 37.6 bits;  conditional E-value: 5.1e-13
  Pentapeptide_3   3 ganFsgaadFrgatFsgaasFsnadF.gsadFsgarFtgdvdFsgat 48 
                     g+ + ga +F++a+F g++sF +a+F g+a F++a F+g+++F++a+
      KIR61597.1 107 GCALAGA-RFDDARFLGTTSFAGARFaGEAIFARALFHGAARFDEAH 152
                     8999999.************************************985 PP

  == domain 4  score: 30.0 bits;  conditional E-value: 1.2e-10
  Pentapeptide_3   1 FsganFsgaadFrgatFsgaasFsnadF.gsadFsgarFtgdvdFsg 46 
                     F +a F+gaa+F++a+F  +a F +a+F g a+F+ga F g + F++
      KIR61597.1 137 FARALFHGAARFDEAHFAADAVFGRARFrGPASFAGAVFGGMAWFGR 183
                     88999***********************99*********998*9985 PP

  == domain 5  score: 26.1 bits;  conditional E-value: 1.9e-09
  Pentapeptide_3   3 ganFsgaadFrgatFsgaasFsnadFg.sadFsgarFtg 40 
                     ga+F g+++Fr+a+  g+a F  a+Fg +a+F ga F g
      KIR61597.1 234 GARFVGPVSFRRARLAGPAWFYKARFGaEATFGGAWFGG 272
                     666666666666666666666666664466666666655 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 0.53
  Pentapeptide_3  10 adFrgatFsgaa 21 
                     +d+++a++ g+a
      KIR61597.1 281 VDLTDARWAGSA 292
                     589999999987 PP

  == domain 7  score: 1.5 bits;  conditional E-value: 0.097
  Pentapeptide_3  30 sadFsgarFtgdvdFsga 47 
                     s +++ga+   d+d+sg+
      KIR61597.1 457 SLSLCGATLV-DLDLSGC 473
                     679******9.*****99 PP

  == domain 8  score: 14.8 bits;  conditional E-value: 6.8e-06
  Pentapeptide_3   2 sganFsgaadFrgatFsgaasFsnadFgsadFs......garFtgdvdFsga 47 
                     sg+ ++ a dF+ a F+g ++F++++F++a F+      +a F+gdv+F ga
      KIR61597.1 471 SGCAVDYA-DFTAAQFHGVTRFDGSTFEGAAFRlggsegRASFHGDVTFAGA 521
                     56666667.8888888888888888888887754444446777777777665 PP

>> Pentapeptide  Pentapeptide repeats (8 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.2   4.2e-07    0.0015       5      34 ..      92     121 ..      91     124 .. 0.86
   2 ?    0.0   0.1       0.2     7e+02      15      29 ..     134     149 ..     124     154 .. 0.63
   3 ?   -1.6   0.0      0.61   2.2e+03      20      25 ..     161     166 ..     155     177 .. 0.49
   4 !   14.1   0.3   7.8e-06     0.028       3      39 ..     465     502 ..     463     502 .. 0.92
   5 ?   -3.4   0.0       2.3   8.3e+03       7      13 ..     517     523 ..     515     525 .. 0.43

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4.2e-07
                   T-B-CCSCCEECCCESEEECT-B-TT-EEC CS
  Pentapeptide   5 gAnLsganLsganlsgAnLtgAnlsgAdLs 34 
                   g++L ga L +a+l g+ L gA + +A++ 
    KIR61597.1  92 GVDLAGATLVDADLGGCALAGARFDDARFL 121
                   799999999999999999999999999985 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.2
                   ECCCESEEECT-.B-T CS
  Pentapeptide  15 ganlsgAnLtgA.nls 29 
                   +a + +A ++gA  + 
    KIR61597.1 134 EAIFARALFHGAaRFD 149
                   4666666666665555 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.61
                   SEEECT CS
  Pentapeptide  20 gAnLtg 25 
                   +A ++g
    KIR61597.1 161 RARFRG 166
                   333333 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 7.8e-06
                   -TT-B-CCSCCEECCCESEEECT-.B-TT-EECCEEEC CS
  Pentapeptide   3 LsgAnLsganLsganlsgAnLtgA.nlsgAdLsganLs 39 
                   L + +Lsg+  + a+++ A ++g+  + g+ ++ga ++
    KIR61597.1 465 LVDLDLSGCAVDYADFTAAQFHGVtRFDGSTFEGAAFR 502
                   56679*****************************9886 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 2.3
                   B-CCSCC CS
  Pentapeptide   7 nLsganL 13 
                    + ga L
    KIR61597.1 517 TFAGARL 523
                   4444444 PP

>> Pentapeptide_4  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00046       1.7       5      54 ..     102     154 ..      98     175 .. 0.82
   2 !    9.4   0.0   0.00032       1.2      32      69 ..     464     502 ..     457     512 .. 0.76
   3 ?   -0.9   0.0      0.53   1.9e+03      12      41 ..     511     541 ..     506     542 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00046
  Pentapeptide_4   5 rcsfnncklsnvnFsearlrd.cnFtecrl.snvnFdecnls.dvdfaevdlk 54 
                     ++ + +c+l+++ F  ar+ + ++F ++r+  ++ F++++++  ++f e++++
      KIR61597.1 102 DADLGGCALAGARFDDARFLGtTSFAGARFaGEAIFARALFHgAARFDEAHFA 154
                     667889*************99889******98888988888734567777764 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00032
  Pentapeptide_4  32 rlsnvnFdecnlsdvdfaevdlkra.sFsgcnlknvnfs 69 
                      l++  ++ c ++ +df+ +++  + +F g++++++ f+
      KIR61597.1 464 TLVDLDLSGCAVDYADFTAAQFHGVtRFDGSTFEGAAFR 502
                     556677788888888888888888778888888888775 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.53
  Pentapeptide_4  12 klsn.vnFsearlrdcnFtecrlsnvnFdec 41 
                      +++ v+F+ arl + +  +  l +v+F+ +
      KIR61597.1 511 SFHGdVTFAGARLDRFRAPAEVLGAVVFHAT 541
                     6777789999999888777777777777765 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   2.3      0.16   5.7e+02      50      74 ..      27      57 ..      19      81 .. 0.49
   2 ?    0.8   0.0      0.18   6.4e+02      12      26 ..      64      78 ..      60      94 .. 0.68
   3 ?   13.3   0.3   2.3e-05     0.081       7      68 ..     352     420 ..     346     428 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.16
      HEAT_2 50 aaaeaLgaig......dpealpaLkellddd 74
                aa + L+++g      +++a++a +++l+++
  KIR61597.1 27 AALRRLAQLGaadpalRQDAADAVCAYLRTP 57
                4444444444322222233444444444333 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.18
      HEAT_2 12 pdpevrraairaLgr 26
                pd + rr+a+r+L+ 
  KIR61597.1 64 PDADGRREAVRVLAG 78
                677778888888772 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 2.3e-05
      HEAT_2   7 alendpdpevrraairaLgrignp......ealpaLvelled..edpavRraaaeaLgaigdpealpaLk 68 
                 +l  dpdp+vrr  +r+Lg++g+       ++++a+  +l+   + p + +  a  +g++ + +a++ L+
  KIR61597.1 352 QL-ADPDPDVRRVGLRVLGELGDArpelrqRVVDAVCGYLRAplPFPVTGELTAAQAGEVELRRAAQRLL 420
                 57.7999*****9999999998854444445566666666553344566666666666666655555554 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2       0.6   2.2e+03      16      27 ..      24      35 ..      24      39 .. 0.87
   2 ?   -1.7   0.5       1.5   5.2e+03       6      26 ..      33      52 ..      28      54 .. 0.77
   3 ?    9.7   0.0   0.00031       1.1       8      28 ..     352     372 ..     348     375 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.6
                HHHHHHHHHHHH CS
        HEAT 16 VReaAakaLgal 27
                +ReaA++ L++l
  KIR61597.1 24 QREAALRRLAQL 35
                69*****99998 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.5
                HHHHT-SSHHHHHHHHHHHHH CS
        HEAT  6 lkllsDpspeVReaAakaLga 26
                 + l   +p  R+ Aa a++a
  KIR61597.1 33 AQ-LGAADPALRQDAADAVCA 52
                44.688899999999999876 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00031
                 HHT-SSHHHHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLgala 28 
                  l Dp+p+VR+  ++ Lg+l 
  KIR61597.1 352 QLADPDPDVRRVGLRVLGELG 372
                 689***************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4318.51
//
Query:       KIR61598.1  [L=492]
Description: glutamate--cysteine ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-07   29.0   1.3      0.021   14.2   0.1    2.5  2  GCS2      Glutamate-cysteine ligase family 2(GCS2)


Domain annotation for each model (and alignments):
>> GCS2  Glutamate-cysteine ligase family 2(GCS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.2e-06     0.021       2     107 ..      46     152 ..      45     166 .. 0.74
   2 !   13.7   0.2   1.7e-06      0.03     128     184 ..     192     247 ..     172     360 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-06
                 EEEEEEEEEETTTTEE-S-HHHHHCCCTTT-S.SSEEEE-SSTTEEEEE--SBS....SHHHHHHHHHHHHHHHHHHHHHTT-EEE--SB-SS------ CS
        GCS2   2 gvEeeflvvdlatgdlrgwseiledeaiiglseggsvvkelpegqvElstaple....slaeaaeeisadleelrsvadelGlellglGthPfalrsed 96 
                 g+E e+ +vd+        ++ ++  a+i++    s+++el + +vE+  ap +    ++a+++e ++a l+++ + a+  G  ++++G  P  lr+e+
  KIR61598.1  46 GLEIELNLVDEESMPAM-RNADVL--AAIADP---SFQTELGQFNVEINVAPRRlagtGTAAFEEHVRASLNAAETKARGVGAHMVMIGILP-TLRPEH 137
                 78889999988776666.233333..444455...9***************986444478999999**************************.555544 PP

                 ....---------TH CS
        GCS2  97 ....evtpkaryrrm 107
                     ++  ++ry+ +
  KIR61598.1 138 ltaeTLSANPRYQLL 152
                 111145555666554 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.7e-06
                 EEEE-SSHHHHH.HHHHHHHTTHHHHHHHH--B-EETTEE-S-SB-GGGCCTTSTT..- CS
        GCS2 128 vqvnidssseedVevlrlvrallPvllAlsAnSPfleGrdtgyaStRariftqtpq..a 184
                  ++ +  ++   +  ++ + a + + +Al AnSP+l Gr   ++ tR  +f+q  +  a
  KIR61598.1 192 FHLQVSPAQF--ADHWNAAQAVAGIQVALGANSPLLFGR-ELWRETRIPLFQQATDtrA 247
                 4444444333..5699999********************.9**********99665344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3529.73
//
Query:       KIR61599.1  [L=178]
Description: hypothetical protein TK50_29010 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.91    9.4   5.7       0.62    9.9   3.2    1.9  2  TMEM239   Transmembrane protein 239 family


Domain annotation for each model (and alignments):
>> TMEM239  Transmembrane protein 239 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.079   1.4e+03     118     129 ..      42      54 ..      29      76 .. 0.54
   2 ?    9.9   3.2   3.5e-05      0.62      93     128 ..     142     178 .]     134     178 .] 0.83

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.079
     TMEM239 118 allfaasfl.lll 129
                 a++ aas + lll
  KIR61599.1  42 AVVTAASVMgLLL 54 
                 3333333321111 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 3.5e-05
     TMEM239  93 lwpvvaavwkhllpallll.vlsalpallfaasflll 128
                 l p  a++w hl p lll  +l al  l+ aa++ll+
  KIR61599.1 142 LRPRHATLWSHLGPPLLLQaILGALLVLVVAAAILLI 178
                 568899*******9999862689********999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1499.70
//
Query:       KIR61600.1  [L=374]
Description: peptide chain release factor 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-35  121.8  16.1    6.2e-35  120.5  16.1    1.7  1  baeRF_family2   Bacterial archaeo-eukaryotic release factor f
    1.4e-16   61.0   7.3    3.7e-16   59.6   7.3    1.8  1  baeRF_family10  Bacterial archaeo-eukaryotic release factor f
    5.9e-14   52.5  10.2    5.9e-14   52.5  10.2    2.6  3  acVLRF1         Actinobacteria/chloroflexi VLRF1 release fact
     0.0074   15.7   1.5      0.014   14.8   1.5    1.4  1  PALP            Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
       0.19   11.9   3.4       0.22   11.8   0.9    2.3  2  LPD22           Large polyvalent protein associated domain 22


Domain annotation for each model (and alignments):
>> baeRF_family2  Bacterial archaeo-eukaryotic release factor family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5  16.1   1.7e-38   6.2e-35       3     144 ..     120     262 ..     118     266 .. 0.98

  Alignments for each domain:
  == domain 1  score: 120.5 bits;  conditional E-value: 1.7e-38
  baeRF_family2   3 lvvevDrtGadltlvdaggeeeeetveGghd.pvhkvraggwshrryqrraeeswerNaeavAeevdrlvresgaelVvlaGDvrarsllrdeLpe 97 
                    + v++Dr+Gad  +v+agg  ++++v+G++d p+++v+ ggws++ryqr a e+w++Na + A++  +l++++gae+Vv+aGDvra ++++++Lpe
     KIR61600.1 120 VRVLADRRGADAVAVSAGGVPRRAHVTGREDfPLRRVSPGGWSQSRYQRAAMEAWHHNAGDAAAATVELAEKVGAEVVVVAGDVRATGMIAAQLPE 215
                    789**************************999**************************************************************** PP

  baeRF_family2  98 rvrelvvevegggraagadrealaeevaealaerrarrreevlerfr 144
                    r+++++v +++g+r+agad++ +++ + + +ae++++r ++ l+rf 
     KIR61600.1 216 RWQDVLVRTDAGSRHAGADPALMDDVTVQTIAEVADQRVTATLDRFG 262
                    *********************************************96 PP

>> baeRF_family10  Bacterial archaeo-eukaryotic release factor family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   7.3     1e-19   3.7e-16       1     120 [.     104     226 ..     104     254 .. 0.86

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 1e-19
  baeRF_family10   1 PylapLlealdeyerygvvlvdreraRlfevylgeleeveevegevp...grtktggwksqdrfqrreeeqaerhlkevAellaklleergverl 92 
                     P++ pLl+   e+  ++ vl dr++a    v+ g +    +v+g ++   +r+  ggw sq r+qr + e +++++ ++A+++++l+e+ g+e +
      KIR61600.1 104 PHTMPLLAQRGEQVAWVRVLADRRGADAVAVSAGGVPRRAHVTGREDfplRRVSPGGW-SQSRYQRAAMEAWHHNAGDAAAATVELAEKVGAEVV 197
                     999***********************8888888887764444444443567999****.************************************ PP

  baeRF_family10  93 vlgGdeeetaalldrlpkalrarvvgt.l 120
                     v++Gd ++t +++++lp+++++++v t  
      KIR61600.1 198 VVAGDVRATGMIAAQLPERWQDVLVRTdA 226
                     ************************99833 PP

>> acVLRF1  Actinobacteria/chloroflexi VLRF1 release factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.4   5.2e+03      64     100 ..      56      99 ..      44     107 .. 0.59
   2 !   52.5  10.2   1.6e-17   5.9e-14       3     120 ..     120     241 ..     118     251 .. 0.81
   3 ?    0.2   0.8      0.25   8.9e+02      76     114 ..     284     324 ..     240     364 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.4
     acVLRF1  64 eaaarllaeesae.......vvlgGdrslvaevledarlaplat 100
                 +a++r+++ +++        v+ +  r+++ e l+ + l+ lat
  KIR61600.1  56 DAVERVVRGHDPMagdygiaVFATRGRAVLTEYLSAPPLRDLAT 99 
                 45555554444434446666666666666666666666555555 PP

  == domain 2  score: 52.5 bits;  conditional E-value: 1.6e-17
     acVLRF1   3 lgvllvrrggfavgvve.ggelvaskvgtrd.vqgrtaaGGwSqqRfaRrrenqadalleavaeaaarllaeesae.vvlgGdrslvaevledarlapl 98 
                 + vl +rrg+ av+v   g  + a+++g++d +  r + GGwSq+R++R   + + +++ ++a+a  +l ++  ae vv++Gd +++  ++++   +  
  KIR61600.1 120 VRVLADRRGADAVAVSAgGVPRRAHVTGREDfPLRRVSPGGWSQSRYQRAAMEAWHHNAGDAAAATVELAEKVGAEvVVVAGDVRATGMIAAQLPERWQ 218
                 689**************88999999999987357899********************************97777779***************9775554 PP

     acVLRF1  99 atlare...elldvpdprravLeda 120
                 + l+r    + ++ +dp  a+++d+
  KIR61600.1 219 DVLVRTdagSRHAGADP--ALMDDV 241
                 44444422234455555..666666 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.25
     acVLRF1  76 e.vvlgGdrslvaevledarlaplatlare.elldvpdprr 114
                 + ++++ d+s +a++   ++ + +at + + +++ v+dprr
  KIR61600.1 284 DtMLIVDDPSSTAQLWVGPEPTDIATDPGQlTAVSVADPRR 324
                 13555555555555555555555555555534446666654 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.5   3.8e-06     0.014      89     198 ..     181     298 ..     169     349 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.8e-06
                 S-HHHHHHHHHTT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTT......SHHHHHH.HHTHHHHHH.HHTTTTEEEEEEE-SSSHHHHHHHHHHH CS
        PALP  89 aspekvallrllGaevvevggdydeavaaaaelaaegegaylvsqfd......nptvieg.ygtiglEil.eqlggkpdavvvpvGgGgliaGiaaglk 179
                 a ++ v+l +  Gaevv+v gd+ ++  +aa+l ++++++++  + +      +p+ ++    ++ +E++ +++   +d + v+  +G+ + +++ +l+
  KIR61600.1 181 AAAATVELAEKVGAEVVVVAGDVRATGMIAAQLPERWQDVLVRTDAGsrhagaDPALMDDvTVQTIAEVAdQRVTATLDRFGVQEDVGAGLDAVVSALR 279
                 557889999***************************9999999888888888899999999999999**8555559999******************** PP

                 HHSTT-EEEEEEECTTCGG CS
        PALP 180 errpdvrvigvepegsdal 198
                  +  d+ +i+ +p+  + l
  KIR61600.1 280 RNQVDTMLIVDDPSSTAQL 298
                 9888866666666644444 PP

>> LPD22  Large polyvalent protein associated domain 22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.61   2.2e+03      15      36 ..     114     135 ..     101     143 .. 0.84
   2 ?   11.8   0.9   6.1e-05      0.22       4      70 ..     168     237 ..     165     241 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.61
       LPD22  15 PDeaAralrlaeelGlppdvve 36 
                  +++A ++ la ++G ++ +v 
  KIR61600.1 114 GEQVAWVRVLADRRGADAVAVS 135
                 5899999999999999988876 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 6.1e-05
       LPD22   4 asalelaqnenPDeaAralrlaeelGlppdvvern.leaferaa.eaedwdalledsPatakwl.adpdn 70 
                 ++a+e+      D+aA + +lae++G +  vv+ + ++    aa  +e+w+++l +  a ++ + adp  
  KIR61600.1 168 RAAMEAWHHNAGDAAAATVELAEKVGAEVVVVAGDvRATGMIAAqLPERWQDVLVRTDAGSRHAgADPAL 237
                 567777778888***********************5544444445899******9999999988788765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2598.96
//
Query:       KIR61601.1  [L=586]
Description: thiamine pyrophosphate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-37  127.4   0.9    6.7e-37  126.7   0.2    1.7  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
      4e-28   97.8   0.5    1.2e-27   96.3   0.1    2.0  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
    7.8e-20   71.2   0.0    3.6e-19   69.0   0.0    2.2  3  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
  ------ inclusion threshold ------
       0.23   11.5   2.6        0.3   11.1   0.1    2.3  2  HRDC          HRDC domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.2   1.5e-40   6.7e-37       2     169 ..       5     171 ..       4     173 .. 0.95
   2 ?   -3.7   0.0       1.8     8e+03      84     102 ..     428     446 ..     412     460 .. 0.65

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 1.5e-40
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT..TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeq.girvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvls 97 
                   tva+++v++L+a++v ++fg+pG  + pl+ al+++  +  +v arhE++a f+A+g+a++tg++gv+l+t gp a+++l++l++Ak+d+ P+++++
    KIR61601.1   5 TVADLVVERLRAWRVPRAFGCPGAAVAPLVAALDRAGgDPAFVPARHEETASFMASGHAKFTGEIGVCLATQGPSAVHLLNGLYDAKLDSKPVVAIV 101
                   9************************************************************************************************ PP

                   EE--CCCHHS..TC--T-CCHHHCCCS.SEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEE CS
  TPP_enzyme_N  98 gdrptslrgqgvlqqeldqlalfrpvt.kyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevd 169
                   g+      g  + ++e+  + lf +v+ ++++  ++p ++p +l++A+rta  +++ P++++lp++++ ++v+
    KIR61601.1 102 GEDIGGPLG--GAHEEIGLSRLFGDVCnQFVRYGRTPGQVPAVLDQAFRTA-AATRSPTCVVLPRELQVAPVP 171
                   *99888888..56669***********55667789****************.99999***********99986 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.8
                   HHHHHHT--EEEEEEE--C CS
  TPP_enzyme_N  84 aeAkvdriPllvlsgdrpt 102
                   a  ++   P+l+l+gd + 
    KIR61601.1 428 AKLARPDRPVLALAGDGAM 446
                   3444445688888887655 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.1   2.7e-31   1.2e-27       2     137 .]     200     329 ..     199     329 .. 0.91
   2 ?   -1.6   0.1      0.47   2.1e+03       4      37 ..     426     460 ..     425     462 .. 0.76

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 2.7e-31
                   HHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTTT CS
  TPP_enzyme_M   2 ekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgsep 98 
                   ++aa+ l    r++ilvG+g +  ga +e+++la++lg+ v+ +l gk v++e+ p+++g+lg +g++aa +++  +D++l++G++  +   t+++p
    KIR61601.1 200 AAAASVLGIGDRVAILVGQGGH--GAGDEIVALADRLGAGVAASLLGKPVLDERLPFHAGVLGEVGTTAAAQLMGGCDTLLLVGTNDPW---TDYYP 291
                   67888888889***********..************************************************************87555...33444 PP

                   TTTTT-EEEEEESSCCCCTTCC--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  99 efapeakiihididpaeigknyqvdlaivgdvketleaL 137
                     + + + ++idid   ig++y+vd+++vgd++etl+aL
    KIR61601.1 292 -LPGQVRTVQIDIDGRRIGNRYPVDVPLVGDATETLRAL 329
                   .4445599*****************************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.47
                   HHHHHHH-SSEEE.EE-CHHCHTTGHHHHHHHHHH CS
  TPP_enzyme_M   4 aaellkaakrpvi.lvGggvarsgaseelrelaek 37 
                   +a+ l++  rpv+ l+G g+ + +  +el  +a +
    KIR61601.1 426 VAAKLARPDRPVLaLAGDGAMQLNGLAELITVAHH 460
                   67788888899764788888888888888888765 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.7   7.8e+03     116     139 ..      19      37 ..      12      47 .. 0.61
   2 ?   -2.9   0.0       1.2   5.3e+03      45      54 ..      93     102 ..      56     103 .. 0.68
   3 !   69.0   0.0   8.1e-23   3.6e-19       1     152 [.     389     537 ..     389     538 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.7
                   HHHHTTSEEEEESSH.HHHHHHHH CS
  TPP_enzyme_C 116 laealGakgarvekadveeleeal 139
                   + +a+G++ga v +     l +al
    KIR61601.1  19 VPRAFGCPGAAVAP-----LVAAL 37 
                   55788888775433.....34444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.2
                   TTSEEEEEEE CS
  TPP_enzyme_C  45 pdrevvaivG 54 
                    +++vvaivG
    KIR61601.1  93 DSKPVVAIVG 102
                   2478999988 PP

  == domain 3  score: 69.0 bits;  conditional E-value: 8.1e-23
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHT.GGGHHHHHHT.....T-SEEEEEEE-SBCCCHHHH CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmi.lqelatavrr.....nlpitvvvlnNegygmtggq 91 
                   d+G+   w ar+l++ +  + + +g+lg+ G +lp+A++akla+pdr+v a++GDG+++ + l el+t++ +     +  ++v+vlnN+    +g  
    KIR61601.1 389 DVGSIVYWYARHLELPPGVTAHLCGTLGSTGCALPYAVAAKLARPDRPVLALAGDGAMQLNgLAELITVAHHwrewpDPRLVVLVLNNRDNSGVGDG 485
                   89*************99999999***********************************************9988887789**************999 PP

                   HHHHTCCTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEE CS
  TPP_enzyme_C  92 qepfggkrksgpagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpalie 152
                     p+g    +g      ++v +a  a+ lG +g+rv+++  e + +a +e l+ ++p+++e
    KIR61601.1 486 RPPAGV---AG-R---RPDVPYAGWARLLGLHGVRVDRP--ELVGAAWDEVLAADRPSVLE 537
                   888885...33.2...78999**************9999..******************98 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.3      0.37   1.7e+03       4      12 ..      10      18 ..       9      22 .. 0.85
   2 ?   11.1   0.1   6.7e-05       0.3       9      43 ..     350     384 ..     345     400 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.37
                HHHHHHHHH CS
        HRDC  4 llkaLrewR 12
                ++++Lr+wR
  KIR61601.1 10 VVERLRAWR 18
                689****** PP

  == domain 2  score: 11.1 bits;  conditional E-value: 6.7e-05
                 HHHHHHHHHHHTS-HHHHS-HHHHHHHHHH---SH CS
        HRDC   9 rewReelAreedvppyvvfpdktLleiAeklPttl 43 
                   wR++ A +  +p++ v p+ +L e++++lP+ +
  KIR61601.1 350 DRWRQAAAARAAEPAGPVNPQLVLHELSARLPREA 384
                 57******************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4288.17
//
Query:       KIR61602.1  [L=467]
Description: hypothetical protein TK50_29025 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 3141.58
//
Query:       KIR61603.1  [L=284]
Description: RNA polymerase subunit sigma-70 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.7e-18   63.4   1.8    1.4e-16   59.7   0.4    2.6  2  Sigma70_r4    Sigma-70, region 4
    1.1e-16   60.4   2.1    2.2e-16   59.3   0.2    2.6  3  Sigma70_r2    Sigma-70 region 2
    1.4e-14   53.9   0.0      3e-12   46.5   0.2    2.2  2  Sigma70_r3    Sigma-70 region 3
    3.6e-10   39.4   2.7    1.1e-09   37.8   0.0    2.7  3  Sigma70_r4_2  Sigma-70, region 4
     0.0001   22.1   0.8      0.023   14.6   0.1    2.9  2  MarR_2        MarR family
    0.00047   19.9   0.6    0.00047   19.9   0.6    2.1  2  HTH_23        Homeodomain-like domain
    0.00066   19.6   0.1     0.0017   18.3   0.0    1.7  2  Sigma70_ECF   ECF sigma factor
     0.0046   16.7   0.0       0.01   15.6   0.0    1.6  1  HTH_Tnp_4     Helix-turn-helix of DDE superfamily endonucleas
     0.0049   16.8   0.0       0.05   13.5   0.0    2.4  2  MarR          MarR family
      0.006   16.4   0.0      0.013   15.3   0.0    1.5  1  IF2_N         Translation initiation factor IF-2, N-terminal 
  ------ inclusion threshold ------
      0.012   15.2   0.1       0.15   11.7   0.0    2.6  3  HTH_24        Winged helix-turn-helix DNA-binding
      0.019   14.9   3.7      0.032   14.2   0.1    2.5  2  HTH_Crp_2     Crp-like helix-turn-helix domain
      0.019   15.1   0.2      0.019   15.1   0.2    3.1  4  HTH_28        Helix-turn-helix domain
      0.071   12.9   0.3       0.45   10.4   0.0    2.2  2  HTH_10        HTH DNA binding domain
      0.071   13.2   0.2       0.51   10.4   0.0    2.3  2  HTH_3         Helix-turn-helix
       0.11   12.4   0.6       0.52   10.3   0.0    2.1  2  HTH_37        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.11   1.2e+02      22      37 ..     146     161 ..     143     162 .. 0.90
   2 !   59.7   0.4   1.3e-19   1.4e-16       1      50 []     211     260 ..     211     260 .. 0.97

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
                 -HHHHHHHHTS-HHHH CS
  Sigma70_r4  22 TleEIgerlgiSrerV 37 
                 T +E++erl  ++e +
  KIR61603.1 146 TVAELAERLETPQEEI 161
                 899*********9965 PP

  == domain 2  score: 59.7 bits;  conditional E-value: 1.3e-19
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 +L++Lp rer++l +rf+ ++T++EI++r+giS+++V+++++rAl  LR+
  KIR61603.1 211 LLHRLPWRERRILAMRFYGNQTQAEIAARFGISQMHVSRLLSRALTWLRQ 260
                 599******************************************99995 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.2     2e-19   2.2e-16       6      70 ..      52     115 ..      47     116 .. 0.94
   2 ?   -1.7   0.0       2.2   2.5e+03      12      24 ..     223     235 ..     218     235 .. 0.85
   3 ?   -2.3   0.0       3.5   3.9e+03      53      62 ..     254     263 ..     245     265 .. 0.65

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 2e-19
                 HHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2   6 lplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70 
                 lp+  rlarr+ g+g+  eDl Q a l+l  av+r+dperg sf+a++  ++ +++++++R+r +
  KIR61603.1  52 LPFAGRLARRYRGRGEPLEDLEQVARLGLVNAVDRYDPERG-SFTAYAAITIVGEIKRHFRDRTW 115
                 788889***********************************.*********************98 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.2
                 HHHHCT-THHHHH CS
  Sigma70_r2  12 larrllgsgadae 24 
                 la+r++g++ +ae
  KIR61603.1 223 LAMRFYGNQTQAE 235
                 799*****99887 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.5
                 HHHHHHHHHH CS
  Sigma70_r2  53 llriarnaai 62 
                 +l++ r+a++
  KIR61603.1 254 ALTWLRQAML 263
                 4566666664 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.2   2.7e-15     3e-12       3      69 ..     127     195 ..     125     202 .. 0.89
   2 ?    5.1   0.0     0.022        25      22      44 ..     232     254 ..     225     257 .. 0.91

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 2.7e-15
                 HHHHHHHHHHHHHHHSSXXXHHHHHHHHTXXHHHHHHHHHHHX..XXEETTXBSSSSTTXBSTTTXBXS CS
  Sigma70_r3   3 lnkikraqreLeqelgrePtpeEiAeeLglseekVrevleaar..epvSldlpvgeeedtelgdlledd 69 
                 + ++ +a+  L+ el r+Pt++E+Ae+L+ ++e+++ +le a   +p Sl+ pvg e+  e+gdl+  +
  KIR61603.1 127 ILEVGQATAALTSELSRAPTVAELAERLETPQEEILAALESAAgySPASLNAPVGGESSAEFGDLVGES 195
                 668899**********************************98733689****************98555 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.022
                 XHHHHHHHHTXXHHHHHHHHHHH CS
  Sigma70_r3  22 tpeEiAeeLglseekVrevleaa 44 
                 t +EiA++ g+s+  V ++l  a
  KIR61603.1 232 TQAEIAARFGISQMHVSRLLSRA 254
                 789**************999876 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.36     4e+02       4      17 ..      28      41 ..      25      42 .. 0.83
   2 ?   -2.2   0.1       2.9   3.3e+03      29      39 ..     147     157 ..     146     162 .. 0.69
   3 !   37.8   0.0     1e-12   1.1e-09       7      54 .]     211     258 ..     205     258 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.36
                  HHHHHTTS-HHHHH CS
  Sigma70_r4_2  4 lrealaeLperqre 17
                    + ++ Lp+++r+
    KIR61603.1 28 YAARIEGLPPERRQ 41
                  567899******97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.9
                   HHHHHHHHT-- CS
  Sigma70_r4_2  29 ykEIAellgis 39 
                    +E Ae+l+++
    KIR61603.1 147 VAELAERLETP 157
                   57788887665 PP

  == domain 3  score: 37.8 bits;  conditional E-value: 1e-12
                   HHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   7 alaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   +l +Lp r+r+i+ +r++ + +++EIA+++gis   V + lsRA+  L
    KIR61603.1 211 LLHRLPWRERRILAMRFYGNQTQAEIAARFGISQMHVSRLLSRALTWL 258
                   799*****************************************9765 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.018        20      12      35 ..     139     158 ..     124     173 .. 0.78
   2 !   14.6   0.1   2.1e-05     0.023      20      45 ..     221     254 ..     205     257 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.018
                 HHHHCTTTSEEEHHHHHHHHTSSH CS
      MarR_2  12 aaLgrrpgrdltvgelarrlglsk 35 
                  +L r+p    tv+ela+rl  ++
  KIR61603.1 139 SELSRAP----TVAELAERLETPQ 158
                 4566666....********98665 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.1e-05
                 S........EEEHHHHHHHHTSSHHHHHHHHHHH CS
      MarR_2  20 r........dltvgelarrlglsksavsrilkrL 45 
                 r        + t++e+a+r+g+s+  vsr+l r+
  KIR61603.1 221 RilamrfygNQTQAEIAARFGISQMHVSRLLSRA 254
                 45555444446********************997 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       8.8   9.8e+03      36      45 ..      57      66 ..      56      72 .. 0.66
   2 !   19.9   0.6   4.2e-07   0.00047       5      40 ..     219     253 ..     218     259 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 8.8
      HTH_23 36 rwlkryreeG 45
                r  +ryr  G
  KIR61603.1 57 RLARRYRGRG 66
                5668887666 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 4.2e-07
      HTH_23   5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkr 40 
                 ++R+++++ +   ++++eIA+++g+s+++v+r l+r
  KIR61603.1 219 ERRILAMRFYG-NQTQAEIAARFGISQMHVSRLLSR 253
                 57888888888.69********************99 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         7   7.9e+03      45      68 ..      19      42 ..      15      53 .. 0.68
   2 !   18.3   0.0   1.5e-06    0.0017     129     183 ..     207     262 ..     178     264 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 7
  Sigma70_ECF 45 etledtaLvfeaflrlvdkekfpd 68
                 e+l++ aL++ a + ++  e+ ++
   KIR61603.1 19 EDLDAAALAYAARIEGLPPERRQE 42
                 677888888888777777666655 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.5e-06
  Sigma70_ECF 129 alerlls.ldpeqarlvelrkleGlsveEiAeklgvskrtverrlalaRawlerel 183
                  ++  ll+ l+ + +r +++r+    + +EiA+++g+s+  v r l  a +wl++++
   KIR61603.1 207 TVSGLLHrLPWRERRILAMRFYGNQTQAEIAARFGISQMHVSRLLSRALTWLRQAM 262
                  3455666588999999999999999***************************9986 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   8.9e-06      0.01      19      50 ..     230     261 ..     222     264 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8.9e-06
   HTH_Tnp_4  19 nltyqdLayrFgvsestvsrifhkwvdlLaer 50 
                 n t+  +a+rFg+s+ +vsr  ++ +  L ++
  KIR61603.1 230 NQTQAEIAARFGISQMHVSRLLSRALTWLRQA 261
                 568999****************9999888876 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.89     1e+03      17      28 ..     144     155 ..     141     158 .. 0.77
   2 !   13.5   0.0   4.5e-05      0.05      16      39 ..     229     252 ..     226     253 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.89
                 TEEHHHHHHHHT CS
        MarR  17 plsvseLakklg 28 
                 +++v+eLa++l+
  KIR61603.1 144 APTVAELAERLE 155
                 678889999886 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 4.5e-05
                 TTEEHHHHHHHHTS-HHHHHHHHH CS
        MarR  16 gplsvseLakklgvskstvtrvld 39 
                 g+++++e+a ++g+s+++v+r+l 
  KIR61603.1 229 GNQTQAEIAARFGISQMHVSRLLS 252
                 89*******************986 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.1e-05     0.013       5      31 ..     146     172 ..     146     178 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
       IF2_N   5 rVyeLAkeLgvkskevikkLfkelGie 31 
                 +V eLA++L ++ +e+++ L++ +G++
  KIR61603.1 146 TVAELAERLETPQEEILAALESAAGYS 172
                 89******************9999997 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0         1   1.2e+03      19      27 ..     146     154 ..     146     158 .. 0.85
   2 ?   -1.2   0.0       1.4   1.5e+03       6      22 ..     159     175 ..     154     176 .. 0.81
   3 ?   11.7   0.0   0.00013      0.15      17      40 ..     230     253 ..     228     255 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1
      HTH_24  19 sqreLAerl 27 
                 + +eLAerl
  KIR61603.1 146 TVAELAERL 154
                 679****98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.4
      HTH_24   6 rkILelLqknprisqre 22 
                  +IL +L+  ++ s + 
  KIR61603.1 159 EEILAALESAAGYSPAS 175
                 589****9999888765 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00013
      HTH_24  17 risqreLAerlglSpstvnrrlkr 40 
                 + +q+e+A r g+S+  v+r l r
  KIR61603.1 230 NQTQAEIAARFGISQMHVSRLLSR 253
                 679****************99877 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.6      0.33   3.7e+02       2      38 ..     122     161 ..     121     167 .. 0.71
   2 ?   14.2   0.1   2.9e-05     0.032      16      44 ..     224     253 ..     206     260 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.33
                 HHHHHHHHHHCTTTC...EEEEEHHHHHHHHHTTSSHHHH CS
   HTH_Crp_2   2 RlArfLlrlaeragg...eielpltqeelAsmlGltretv 38 
                 Rl  ++l+  +  ++   e+    t +elA++l + +e +
  KIR61603.1 122 RLRDLILEVGQATAAltsELSRAPTVAELAERLETPQEEI 161
                 677778877555343445666789999******9998876 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.9e-05
                 C.EEEEEHHHHHHHHHTTSSHHHHHHHHHH CS
   HTH_Crp_2  16 g.eielpltqeelAsmlGltretvsrilse 44 
                 + ++  + tq+e+A++ G+++ +vsr+ls+
  KIR61603.1 224 AmRFYGNQTQAEIAARFGISQMHVSRLLSR 253
                 24455588********************86 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       2.2   2.4e+03      39      49 ..      30      40 ..      26      42 .. 0.76
   2 ?   -0.8   0.2       1.5   1.7e+03      32      45 ..      58      70 ..      57      77 .. 0.68
   3 ?   -2.9   0.0         7   7.8e+03      14      23 ..     146     155 ..     143     160 .. 0.81
   4 ?   15.1   0.2   1.7e-05     0.019      12      38 ..     229     256 ..     220     266 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.2
      HTH_28 39 gGiagLvprrr 49
                  i+gL p rr
  KIR61603.1 30 ARIEGLPPERR 40
                47899999887 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.5
      HTH_28 32 WikryeegGiagLv 45
                + +ry+  G+  L+
  KIR61603.1 58 LARRYRGRGE-PLE 70
                5699**9995.443 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 7
      HTH_28  14 svreaArelg 23 
                 +v+e+A++l 
  KIR61603.1 146 TVAELAERLE 155
                 7899999886 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 1.7e-05
      HTH_28  12 Gh.svreaArelgisrrtvyrWikryee 38 
                 G+ +++e+A+++gis+ +v+r+++r  +
  KIR61603.1 229 GNqTQAEIAARFGISQMHVSRLLSRALT 256
                 6669*******************99765 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.79   8.8e+02      21      36 ..     142     157 ..     140     169 .. 0.70
   2 ?   10.4   0.0    0.0004      0.45      26      48 ..     233     255 ..     230     258 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.79
      HTH_10  21 PRrvtlkeLAkelGIs 36 
                 +R  t++eLA++l   
  KIR61603.1 142 SRAPTVAELAERLETP 157
                 5788999****99755 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0004
      HTH_10  26 lkeLAkelGIskstlsehLrkae 48 
                  +e+A ++GIs++ +s  L++a 
  KIR61603.1 233 QAEIAARFGISQMHVSRLLSRAL 255
                 589******************96 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.1   1.2e+03      36      52 ..     157     173 ..     145     176 .. 0.60
   2 ?   10.4   0.0   0.00045      0.51      11      31 ..     232     252 ..     230     264 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.1
                 SBHHHHHHHHHHHTSEH CS
       HTH_3  36 PsletlkklakaLgvsl 52 
                 P  e+l +l+ a g+s+
  KIR61603.1 157 PQEEILAALESAAGYSP 173
                 56666666666666665 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00045
                 HHHHHHHHHTSSHHHHHHHHT CS
       HTH_3  11 sqeeLAeklGvsrstisriEn 31 
                 +q+e+A++ G+s+ ++sr+ +
  KIR61603.1 232 TQAEIAARFGISQMHVSRLLS 252
                 8*****************976 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       1.1   1.2e+03      19      42 ..     141     166 ..     124     169 .. 0.68
   2 ?   10.3   0.0   0.00046      0.52      33      54 ..     232     253 ..     221     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.1
                 HHHH..HHHHHHHCT--HHHHHHHHT CS
      HTH_37  19 lala..iaeliekrelsqseaaqllg 42 
                 l +a  +ael e++e  q+e+ ++l+
  KIR61603.1 141 LSRAptVAELAERLETPQEEILAALE 166
                 44445588888888888888877665 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00046
                 -HHHHHHHHT--HHHHHHHHTT CS
      HTH_37  33 sqseaaqllgiaqPkvsrllrg 54 
                 +q+e+a+++gi+q +vsrll  
  KIR61603.1 232 TQAEIAARFGISQMHVSRLLSR 253
                 8******************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1902.54
//
Query:       KIR61604.1  [L=668]
Description: cytochrome C oxidase subunit I [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.6e-152  506.1  61.9   8.9e-152  505.9  61.9    1.0  1  COX1             Cytochrome C and Quinol oxidase polypeptide 
  ------ inclusion threshold ------
       0.16   12.0   3.4         11    6.1   0.4    2.5  2  p53-inducible11  Tumour protein p53-inducible protein 11


Domain annotation for each model (and alignments):
>> COX1  Cytochrome C and Quinol oxidase polypeptide I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  505.9  61.9  9.9e-156  8.9e-152       2     432 .]      51     494 ..      50     494 .. 0.98

  Alignments for each domain:
  == domain 1  score: 505.9 bits;  conditional E-value: 9.9e-156
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCTCT.....-HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTSS-S-HHHHHHHHHHHHHHHHHHHH CS
        COX1   2 igllylilalvlllvggllgllirlqlafp.....dletynqlrtlHgnlmiflfatpfilgfgnylvplllgardlafprlnalsfwlvvlgvvllll 95 
                 igllyl++++v++l+gg+l+ll+r++la p     ++e+ynq++t+Hg++m++lfatp++++fgny+vpl++ga+d+afprlna+++wl+++g++l++ 
  KIR61604.1  51 IGLLYLVTSFVFFLIGGVLALLLRAELARPrlqflSPEQYNQAFTMHGTIMLLLFATPLVFAFGNYIVPLQIGAPDVAFPRLNAFAYWLYLFGGTLVVG 149
                 99**************************998888888************************************************************** PP

                 HHH...CSS-STTTTTTTC.........SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCGS-HHHHHHHHHHHHHHHHCHHHHHHHHHCHHH CS
        COX1  96 sll...gaattgwteYapls........evdlwllglllvvvssllgainfivtilkrrapgmtvaklplfvwavlatailillalpvlalalllllld 183
                 +++   gaa+ gwt+Y+pls        +++lw++gl++++++++lga+n+i+t l+ rapgmt++++p+f+w++l t++l++l++p la+al  l +d
  KIR61604.1 150 GYAtpgGAADFGWTAYTPLSrmehspgiGGNLWIVGLAISGLGTILGAVNLITTTLTLRAPGMTMFRMPIFTWNMLLTSVLVILVFPLLAAALFALAAD 248
                 **999888******************************************************************************************* PP

                 HHCT.-SSSC..E-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHCCCCGGGGTTTSSS-HHHHHHHHHHHHHTH CS
        COX1 184 rslg.kffsp..gdplldqhlfWffgHpeVyililpalgivyyilpkfagrplfsyklsvlafililflsflvwaHHlfttglpewlkalgsvfsllia 279
                 r l  ++f+p  g  +l+qhlfWffgHpeVyi+ lp++gi+ +i+p+f+++p+f+y+ +vla+++i++ls+ vwaHH+f tg   +l  ++s++s+lia
  KIR61604.1 249 RLLDaHVFDPatGGMMLWQHLFWFFGHPEVYIVALPFFGIITEIIPVFSRKPIFGYTGLVLATVAITVLSMSVWAHHMFATGQ--VLLPFFSILSYLIA 345
                 ********9999*********************************************************************97..9************* PP

                 HHHHHCCCHHHHCCTTS-CHCHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSB--HHHHHHH CS
        COX1 280 vPsglkvfnwlatlwrgsirfktpmlfflgfavlfiigGltGvllalpsvnyvvhntywvvaHfHlvllgavvfllfaaiyyllpkltgrmlserlakl 378
                 vP+g+k+fnw++t+w+g+++f+tpmlf++gf+v+f++gGltGvlla+p+v+++v ++y+vvaHfH+vl+g++vf++f+++y+++pk+tgr+l+erl+kl
  KIR61604.1 346 VPTGVKFFNWIGTMWKGQLTFETPMLFAVGFLVTFLLGGLTGVLLASPPVDFHVTDSYFVVAHFHYVLFGTIVFAAFGGVYFWFPKMTGRLLDERLGKL 444
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTTHBSSSST--SCCCCHHHCHHHHHHHHHHHHH CS
        COX1 379 hfwllfiGlvlmflpmhilGllgmprraadyksfletvpelqplnvlrtiggvl 432
                 hfw++f+G++ +fl +h+lG  gmprr+ady +     + +++ln+++t+g+++
  KIR61604.1 445 HFWTMFVGFHATFLVQHWLGNEGMPRRYADYLP----GDGFTTLNMISTVGSFV 494
                 *******************************65....579***********986 PP

>> p53-inducible11  Tumour protein p53-inducible protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2    0.0012        11      90     135 ..     200     245 ..     195     260 .. 0.87
   2 ?    6.1   0.4    0.0012        11     134     178 ..     310     358 ..     301     362 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0012
  p53-inducible11  90 tkisilalrlyGgallalalilWnalttaekviirwtLllealyla 135
                        +++l+lr  G +++ + + +Wn l t+  vi+ + Ll+ al+  
       KIR61604.1 200 LITTTLTLRAPGMTMFRMPIFTWNMLLTSVLVILVFPLLAAALFAL 245
                      5567899***********************9********9999865 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0012
  p53-inducible11 134 laiqvlvtavtlveseslstaavl....lllsrllalvislyfYallgr 178
                       +++++v++++++ +++++t+ vl    ++ls l+a+ + + f++ +g 
       KIR61604.1 310 ATVAITVLSMSVWAHHMFATGQVLlpffSILSYLIAVPTGVKFFNWIGT 358
                      67999*************9999984444699999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4526.73
//
Query:       KIR61605.1  [L=243]
Description: ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-06   28.4   5.7    1.5e-06   28.4   5.7    2.5  2  STAS_2       STAS domain
    2.5e-06   27.4   0.7    7.1e-06   26.0   0.1    2.1  3  HATPase_c_2  Histidine kinase-like ATPase domain
    0.00043   19.9   0.0    0.00061   19.4   0.0    1.2  1  STAS         STAS domain


Domain annotation for each model (and alignments):
>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   5.7   2.6e-10   1.5e-06       1      74 [.      18      93 ..      18      98 .. 0.83
   2 ?   -0.5   0.3      0.27   1.6e+03       9      24 ..     117     135 ..     107     146 .. 0.65

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 2.6e-10
      STAS_2  1 LsLsGeldldtaaelreqllealaag.aevvvDlsgvervDsaalalLlalartara.rgrrlvlrglppalrrll 74
                ++++G+ldl+t +++++ l++ l+a+ +++vvDl++++  D  al++++a+ar+a++    ++vl ++p + ++ l
  KIR61605.1 18 VRIAGALDLATMRTVHRVLDRCLTAQpDALVVDLHDLTVRDGLALSVFAAAARQAAGwPAVPVVLCAPPARTASWL 93
                689******************9955559**************************9875445666666666666655 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.27
      STAS_2   9 ldtaaelreqlleal...a 24 
                 +++a++lr +l++++   +
  KIR61605.1 117 AAAAPRLRVRLEPVAgacR 135
                 4567778888887764332 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.4   8.5e+03      66      76 ..       4      14 ..       2      17 .. 0.80
   2 ?   -2.7   0.0      0.89   5.3e+03       4      19 ..      25      40 ..      23      54 .. 0.71
   3 !   26.0   0.1   1.2e-09   7.1e-06       7     111 ..     133     224 ..     127     239 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.4
  HATPase_c_2 66 altvevaDsGp 76
                 ++t+ev+D+ p
   KIR61605.1  4 RITCEVRDESP 14
                 79999999876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.89
  HATPase_c_2  4 dpehvrtvrevaeavl 19
                 d++++rtv++v+ ++l
   KIR61605.1 25 DLATMRTVHRVLDRCL 40
                 6778888888887775 PP

  == domain 3  score: 26.0 bits;  conditional E-value: 1.2e-09
  HATPase_c_2   7 hvrtvrevaeavlrraglseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpg.fdpetlpdpteeepkeslkegGrGla 103
                   +r +re ++++  r++l+ el+    ++++E++ N+v+ha       p++v+l+ +   l++ vaD  ++  +++t+         + + egGrGl+
   KIR61605.1 133 ACRRARELVADACGRWHLP-ELVGPASVVLSELVGNVVRHAGT-----PMQVTLTLRRPYLQLAVADGSRAaARAATRT--------DLRAEGGRGLL 216
                  5788888899988888886.5788999**************95.....999****************999955555433........7899******* PP

  HATPase_c_2 104 likglvDe 111
                  l+++l+  
   KIR61605.1 217 LVRELTQR 224
                  ****9875 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     1e-07   0.00061       4     112 ..       9     106 ..       6     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1e-07
                 EEECTTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHHHHHHHH.HTT-EEEEES--HHHHHHHHHTTC CS
        STAS   4 aeeiegililrldgpidfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLkeilkelk.rigvevvlvnikpevreklektgf 101
                 +++   ++++r+ g +d a+  ++ + l+r++  +p           l++dl ++++ D  +++++  + ++      v vvl+ +  + +  l+++ +
  KIR61605.1   9 VRDESPVTVVRIAGALDLATMRTVHRVLDRCLTAQP---------DALVVDLHDLTVRDGLALSVFAAAARQAAgWPAVPVVLCAPPARTASWLTQSRV 98 
                 5667789****************************7.........*********************988776654789999999999999999999988 PP

                 GGCC..SEEES CS
        STAS 102 fdeveeeklfl 112
                 ++ +   ++ +
  KIR61605.1  99 CRGL---PVQR 106
                 8877...5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1722.14
//
Query:       KIR61606.1  [L=384]
Description: glycosyl transferase family 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-14   53.0   0.0    7.9e-14   51.6   0.0    1.7  2  Glycos_transf_1  Glycosyl transferases group 1
    5.5e-14   52.7   0.1    8.7e-13   48.9   0.0    2.3  2  Glyco_trans_1_4  Glycosyl transferases group 1
    2.2e-10   40.8   2.1    1.4e-09   38.2   1.3    2.5  3  Glyco_transf_4   Glycosyltransferase Family 4
    3.7e-05   24.0   0.0    8.1e-05   23.0   0.0    1.5  1  Glyco_trans_1_2  Glycosyl transferases group 1
     0.0053   17.2  11.3     0.0053   17.2  11.3    3.2  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.6   5.7e+03      90     119 ..      91     120 ..      87     123 .. 0.70
   2 !   51.6   0.0   2.2e-17   7.9e-14      11     152 ..     185     338 ..     179     357 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.6
                      HHCESEEEEEESSBSS-HHHHHHHHTT--E CS
  Glycos_transf_1  90 lknadifvlpsisEgfGivllEAmaaglpv 119
                      + + di ++  + E+ G++ l Am    p 
       KIR61606.1  91 HARDDIDLVHDHVEAVGLATLAAMGPQAPP 120
                      555666667778899999999999665555 PP

  == domain 2  score: 51.6 bits;  conditional E-value: 2.2e-17
                      TTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES....................STTHHHHHHHHHHHCTTCGGGEEECCHSSS CS
  Glycos_transf_1  11 knekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG...................ngeeekelkklaeelelsdnviflgevsred 85 
                       ++k  +++ +gr+++ Kg+d+  +++++        v lv+aG                   + ++   + ++++ +  +d v+++g v  ++
       KIR61606.1 185 RPDKGDYLIILGRINPGKGQDVGARLARR------VGVPLVLAGpvgpyhrpqdlaaagdearQNPDVRFFYDEVAPHVDGDLVRWVGTVAGQE 272
                      56788889999999999999999999995......5899999999999999999999999999888888999999999999**********99* PP

                      HHHHHHCESEEEEEESS.BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHH CS
  Glycos_transf_1  86 leellknadifvlpsis.EgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeai 152
                       + ll  a ++++p ++ E+ G++++E++a+g+pv+a++ g ++e++++g tGll + +  ++la+ +
       KIR61606.1 273 RDDLLAGARAALFPLRWeEPGGTAVVESLALGTPVVATARGCLPELIEHGRTGLLTADE--DELADLL 338
                      ********************************************************999..6666655 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.12   4.2e+02      32     102 ..      55     125 ..      26     162 .. 0.66
   2 !   48.9   0.0   2.4e-16   8.7e-13      34     129 ..     233     339 ..     190     342 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.12
                      EEEEEES---...HHHHHHHT...T-T.TEEEE---THHHHHHHH-SEEEE--..---SHHHHHHHHTT-EEEE-TG CS
  Glyco_trans_1_4  32 vrlvivGdgp.rpeeleelaa...gleerveftGfvedlaellaaadvfvaPs..egfglkllEamaaglpvVatdv 102
                       ++++ Gdg+    +l++  +   g+ ++ ++ G v   ++l a+ d+ ++    e +gl++l am  + p V  ++
       KIR61606.1  55 EKITVFGDGQfH--ALQRPYNqvcGI-SQAHLGGVV---RALHARDDIDLVHDhvEAVGLATLAAMGPQAPPVLHTL 125
                      478888888643..465533223477.466666655...66666666655544468999999999988888877655 PP

  == domain 2  score: 48.9 bits;  conditional E-value: 2.4e-16
                      EEEES---...HHHHHHHTT-...........T.T.EEEE---..THHHHHHHH-SEEEE--...---SHHHHHHHHTT-EEEE-TGGGTTT-- CS
  Glyco_trans_1_4  34 lvivGdgp.rpeeleelaagl...........eer.veftGfv..edlaellaaadvfvaPs...egfglkllEamaaglpvVatdvggiaevv 109
                      l  +Gd+  ++++       +           + + v+++G v  ++ ++lla a+ +++P+   e  g +++E++a+g+pvVat+ g ++e++
       KIR61606.1 233 LAAAGDEArQNPD-------VrffydevaphvDGDlVRWVGTVagQERDDLLAGARAALFPLrweEPGGTAVVESLALGTPVVATARGCLPELI 319
                      3333433221122.......1222222222224335*******9999***************997799*******************778**** PP

                      ..TTSSEE--TT-HHHHHHHHH CS
  Glyco_trans_1_4 110 ..gengllvppgdpealaeail 129
                        g++gll +  d+++la+ +l
       KIR61606.1 320 ehGRTGLLTA--DEDELADLLL 339
                      *********9..9999998765 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   1.3   3.8e-13   1.4e-09       1     109 [.      20     133 ..      20     162 .. 0.75
   2 ?   -1.5   0.0       0.6   2.1e+03      57      83 ..     151     177 ..     142     185 .. 0.75
   3 ?   -0.6   0.0      0.32   1.2e+03      84     108 ..     293     316 ..     282     349 .. 0.73

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 3.8e-13
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeev...elvvrvprvplpllkrllrslaflrrlrrllkre.kpDvvHahspaalgaallal 91 
                     +GG+e+++ +L+ +L+r+G++V++ + +++  + +e        ++++  +p ++ +++s a+l  + r+l++  ++D+vH h +a + +a la+
      KIR61606.1  20 YGGIENVIATLVPELRRLGVRVVLASVDSSTLPVDEKitvFGDGQFHALQRPYNQVCGISQAHLGGVVRALHARdDIDLVHDHVEAVG-LATLAA 113
                     7************************88888777777556633344555555666677777888888888888888********98876.555666 PP

  Glyco_transf_4  92 rrrlgiplVltvHglye..k 109
                     +    +p+ +t+H+  +  +
      KIR61606.1 114 MGPQAPPVLHTLHWDLAkhP 133
                     667**********9996432 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.6
  Glyco_transf_4  57 slaflrrlrrllkrekpDvvHahspaa 83 
                     s a l r+ r+l+++ +  vH  +p a
      KIR61606.1 151 SAAQLARAPRALREHSVGHVHLSTPLA 177
                     566777888888888888888777654 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.32
  Glyco_transf_4  84 lgaallalrrrlgiplVltvHglye 108
                     +g a++ +++ lg p+V+t+ g  +
      KIR61606.1 293 GGTAVVESLA-LGTPVVATARGCLP 316
                     5566666665.9*******988876 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.2e-08   8.1e-05       3      73 ..     284     354 ..     282     368 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.2e-08
  Glyco_trans_1_2   3 Lnpsrsespnl.rlfEaaacGafaltddaegleelftpgkevilfedleelaekirylla.npeerraiaeaa 73 
                      L+p r e+p +  ++E +a G++++++++  l+el++ g++++l +d++ela+ + ++   + +e+r+  eaa
       KIR61606.1 284 LFPLRWEEPGGtAVVESLALGTPVVATARGCLPELIEHGRTGLLTADEDELADLLLAASVlDGDECRR--EAA 354
                      778888887764799************99************************986654424444443..333 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2  11.3   1.5e-06    0.0053       1     105 [.      21     142 ..      21     190 .. 0.70
   2 ?   -3.2   8.6       2.9     1e+04      25     102 ..     174     221 ..     142     368 .. 0.49

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.5e-06
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvlt.papapgape..leedgvrvhrlpvprrps.pladlaalralrrllrqrrerpdvvhahsptaglaarl 90 
                      gGi+ ++a l+ +L+++G++V++   ++ + + +e   + +  + h l  p+++  +  + a+l ++ r+l ++r  +d+vh h    gla ++
       KIR61606.1  21 GGIENVIATLVPELRRLGVRVVLASvDSSTLPVDEkiTVFGDGQFHALQRPYNQVcGI-SQAHLGGVVRAL-HARDDIDLVHDHVEAVGLATLA 112
                      8*********************998655555555444334445578888888873122.347999999999.8************988888877 PP

  Glyco_trans_4_4  91 arrrrgiplvvtlh...............g 105
                      a  +  +p+++tlh               g
       KIR61606.1 113 AMGPQAPPVLHTLHwdlakhpdlygnldgG 142
                      77677999******9887776666544321 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.9
  Glyco_trans_4_4  25 t.......papapg................apeleedgvrvhrlpvprrpspladlaalralrrllrqrrerpdvvhahsptaglaarlarrrr 95 
                      t       ++p+p+                +                                                       arlar r 
       KIR61606.1 174 TplavdadRRPRPDkgdyliilgrinpgkgQ----------------------------------------------------DVGARLAR-RV 214
                      3444433311111133444444443333221....................................................12233333.33 PP

  Glyco_trans_4_4  96 giplvvt 102
                      g+plv+ 
       KIR61606.1 215 GVPLVLA 221
                      3333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2839.99
//
Query:       KIR61607.1  [L=337]
Description: glucosyl-3-phosphoglycerate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-14   54.4   0.0    2.2e-14   53.6   0.0    1.4  1  Glycos_transf_2  Glycosyl transferase family 2
    2.2e-08   34.3   0.1    3.6e-08   33.6   0.1    1.3  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
     0.0015   17.3   0.0      0.012   14.3   0.0    2.2  2  Osmo_MPGsynth    Mannosyl-3-phosphoglycerate synthase (osmo_M
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.018   14.5   0.0    1.1  1  Glyco_tranf_2_2  Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   4.9e-18   2.2e-14       1     119 [.      41     165 ..      41     207 .. 0.90

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 4.9e-18
                      EEEEEESS-TTTHHHHHHHHHHH...GGCCEEEEEEEEES-SSCHHHHHGGGCH....C-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEE CS
  Glycos_transf_2   1 svviptyNeektlletlesllaq...dpypdfeiivvDDgStDetveileelak....edprvrvirreenvGkagalnaglraatgdyilflD 87 
                      svv p+ Nee+t+ + +  +++      ++ +e+ivvD  StD+t+++++++ +    +d+  r + r   +Gk+ al agl+aa gd+++f+D
       KIR61607.1  41 SVVLPARNEEATVGAIVSTIREHlmdRVPLVDELIVVDSRSTDRTAQVARSAGAevvgQDEMTRGLPRL--TGKGDALWAGLAAAEGDVVAFVD 132
                      8************************8889999********************99998888888887776..79********************* PP

                      SS.EEE-TTHHHHHHHHHHH.TTCEEEEEEEEE CS
  Glycos_transf_2  88 aD.depdpdwleklvealekdgadvvlgqrpri 119
                      aD +e+ p ++  l+++l  d+   ++ +++++
       KIR61607.1 133 ADlHEFRPHFVTGLIGPLLTDPSVDFVKGFYHR 165
                      **6699*************98776666666655 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1     8e-12   3.6e-08       3     120 ..      39     159 ..      37     163 .. 0.79

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 8e-12
  Glyco_tranf_2_3   3 dlavlVptfneedvlge...vlesllaqeypr.vevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvl 92 
                      +++v+ p+ nee+++g+   +++++l +  p  +e++vv+ +s++ t++va+ + a+  +   +   +   ++ tgk +al  +l a+++d+v+
       KIR61607.1  39 RVSVVLPARNEEATVGAivsTIREHLMDRVPLvDELIVVDSRSTDRTAQVARSAGAEVVGQ--DEM-TRGLPRLTGKGDALWAGLAAAEGDVVA 129
                      69***********777755599999998777789*****************9976665432..222.2467899******************** PP

  Glyco_tranf_2_3  93 lvDdDtvv.ePdtlkrllqff.ltpkvgav 120
                      +vD+D     P+++  l   +  +p+v++v
       KIR61607.1 130 FVDADLHEfRPHFVTGLIGPLlTDPSVDFV 159
                      *****7655787766555555466677666 PP

>> Osmo_MPGsynth  Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.14   6.3e+02      51      66 ..      38      53 ..      22      92 .. 0.74
   2 !   14.3   0.0   2.7e-06     0.012     144     289 ..     110     238 ..      73     271 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.14
  Osmo_MPGsynth 51 sklaivvpiknEelkv 66
                   s++++v+p +nEe +v
     KIR61607.1 38 SRVSVVLPARNEEATV 53
                   67899*******9754 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.7e-06
  Osmo_MPGsynth 144 nGKgEgmllgillakllgkkyvgFiDaDnyvpgavnEYckafaaglalaksekphamvRikWasKpKvredelvfekeGRvSrvvNrwlNkll.se 238
                     GKg+++  g++ a   + + v+F+DaD       +E+  +f +gl     + p       + ++p v   +++ +  GRv +++ r l +l+  e
     KIR61607.1 110 TGKGDALWAGLAAA---EGDVVAFVDAD------LHEFRPHFVTGLIGPLLTDPSVDFVKGFYHRPLVGAASVEADGGGRVTELMARPLLNLFwPE 196
                    69999999998755...6799******9......68*********99888766666555578899999999***********99988665555045 PP

  Osmo_MPGsynth 239 ieslaaeaeteiikTgnaGEhAmtleLalklrfatGyaiEpfelidllekf 289
                    +    a++         aGE A   +  +++ f +Gy +E+  lidll+ +
     KIR61607.1 197 L----AGF-----VQPLAGEYAGRRDVLERVPFVSGYGVETAMLIDLLDLV 238
                    4....454.....3456*******************************988 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     4e-06     0.018       1      92 [.      41     135 ..      41     142 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4e-06
  Glyco_tranf_2_2   1 svviplraseerhyieervlqkakyy.deei...elivvddgSsekfleevssii.dlnllvylkdeddkayslaaarNrGaskaesdlvlFlD 89 
                      svv+p r++e +  +   v  ++ +  d  +   elivvd  S++ ++++ +s   +  +++ +     +  +++ a   G   ae+d+v F+D
       KIR61607.1  41 SVVLPARNEEAT--VGAIVSTIREHLmDRVPlvdELIVVDSRSTDRTAQVARSAGaEVVGQDEMTRGLPRLTGKGDALWAGLAAAEGDVVAFVD 132
                      789999999988..6666655555554544333499**************9887515677887777667788********************** PP

  Glyco_tranf_2_2  90 aDc 92 
                      aD 
       KIR61607.1 133 ADL 135
                      *95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.53
# Mc/sec: 1920.03
//
Query:       KIR61608.1  [L=362]
Description: zinc-binding alcohol dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-12   46.3   0.0    6.6e-12   45.5   0.0    1.3  1  ADH_zinc_N       Zinc-binding dehydrogenase
    3.4e-05   23.7   0.1      0.092   12.7   0.0    2.6  2  ADH_N_2          N-terminal domain of oxidoreductase
      0.005   16.2   1.0      0.012   14.9   1.0    1.6  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
     0.0062   17.6   0.0      0.018   16.1   0.0    1.8  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.013   15.1   1.5      0.025   14.1   1.5    1.8  1  DAO              FAD dependent oxidoreductase
      0.018   14.2   0.4       0.03   13.4   0.4    1.4  1  FAD_binding_2    FAD binding domain
      0.062   12.5   0.2      0.099   11.9   0.2    1.2  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      0.079   13.2   0.1       0.19   12.0   0.1    1.7  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
      0.086   13.9   0.0       0.59   11.2   0.0    2.3  1  Methyltransf_24  Methyltransferase domain
      0.088   12.2   0.0       0.16   11.3   0.0    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
       0.17   11.5   0.3        0.3   10.8   0.1    1.4  2  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   4.1e-15   6.6e-12       2     100 ..     178     281 ..     177     308 .. 0.81

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 4.1e-15
                 HHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTCH....HHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSE CS
  ADH_zinc_N   2 vGlaavqlAkalGa.eviavdsseeklelakklGadevinykead....lverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkge 94 
                 v l++  +A++ Ga  v++ d+++++++ a+ lG  +++++  +d    l+ r+  + g++g+dvvf c G+  +l+ al+ll+p+G++   ++   g 
  KIR61608.1 178 VALLTALFARHHGAaSVVVLDPTPQRRAVAEALG-LQTLDPGADDpavvLKTRWNHAAGDRGADVVFQCRGQAWALQLALRLLRPQGTVIDLAFyQAGA 275
                 56788899**************************.88999933245555889999999*******************************9888853333 PP

                 EEEEHH CS
  ADH_zinc_N  95 eefdlr 100
                 + ++++
  KIR61608.1 276 DAVRFG 281
                 335554 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0012         2      15      46 ..      11      42 ..       1      60 [. 0.83
   2 !   12.7   0.0   5.6e-05     0.092      69     101 ..      82     114 ..      71     119 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0012
     ADH_N_2 15 esdfeleeeelpelkdGevlvralylSvDPym 46
                +  +el+e++  el dG ++vr+ly +v + +
  KIR61608.1 11 PGRVELVEQDADELRDGTFRVRTLYSGVSAGT 42
                56789********************9997765 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.6e-05
     ADH_N_2  69 gavgeVveSknpdfkvGdlVvgllgwqdyavsd 101
                 ++vg+VveS+ p+++vG++ ++  g ++ +v+d
  KIR61608.1  82 MQVGRVVESRTPAVAVGTVGAMTYGHRTGHVAD 114
                 69****************999988888877765 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.0   7.3e-06     0.012      25      77 ..     164     217 ..     154     279 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.3e-06
                  CB---EEEEESTSHHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTTCECEE CS
  AlaDh_PNT_C  25 gvepakvlviGgGvaGlqAiatakglga.kVtvlDvrparleqleslgakfvev 77 
                  gv+  +v v+G Gv+ l  +  a+  ga +V+vlD  p+r+   e+lg ++++ 
   KIR61608.1 164 GVAGRRVAVVGSGVVALLTALFARHHGAaSVVVLDPTPQRRAVAEALGLQTLDP 217
                  78889******************9999637***********9999999887665 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.1e-05     0.018      11     126 ..     227     352 ..     217     354 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-05
                   STTHHHHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-.............-HHHHHHHH CS
  ADH_zinc_N_2  11 tedfeaatggegvDvvldtvggealleaslkvlpggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkas............aqadileela 94 
                   ++++  a+g +g Dvv+ + g++ +l+ +l++l+++G+++ ++  +      ++ a  r g  ++ + l  + a+             ++++ +e  
    KIR61608.1 227 KTRWNHAAGDRGADVVFQCRGQAWALQLALRLLRPQGTVIDLAfYQ-----AGADAV-RFGEEFHHNGLSLRCAQigrvprglaptwDRERLSAETI 317
                   55666677889**********888889999***888***9998432.....223322.444444444444222224455556777776777678888 PP

                   HHHHHHH..----EEEE.EEGGGHHHHHHHHHSS- CS
  ADH_zinc_N_2  95 alieeGk..lrpvvdrv.fpleeaaeAhrylesgr 126
                   +l+ +    +r+++ +   p+++a+e + +l+++r
    KIR61608.1 318 DLLRAYGdrIRTHLVSAvVPFDQAPELLTDLAERR 352
                   88877533488887766699999998777776665 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.5   1.6e-05     0.025       1      29 [.     169     200 ..     169     356 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
                 EEEEECTSHHHHHHHHHHHHTT...EEEEESS CS
         DAO   1 dvviiGGGiiGlstAyeLarrg...Vtllekg 29 
                 +v+++G+G++ l tA+++  +g   V++l+  
  KIR61608.1 169 RVAVVGSGVVALLTALFARHHGaasVVVLDPT 200
                 59****************66689******986 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.4   1.8e-05      0.03       2      35 ..     170     204 ..     169     238 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.8e-05
                    EEEE--SHHHHHHHHHHHHTTT.-EEEEESSSGGG CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGl.kvavvekeqefg 35 
                    v V+GsG+  L  Al a+++G+ +v+v++ +++++
     KIR61608.1 170 VAVVGSGVVALLTALFARHHGAaSVVVLDPTPQRR 204
                    89********************9*****9999854 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   6.1e-05     0.099     138     175 ..     163     201 ..     134     213 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.1e-05
                  CSS-TSEEEEES-SHHHHHHHHHHHHHT-E.EEEEESSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  Pyr_redox_2 138 lkllpkrivvvGgGyiGvElAaalaklgke.vtlveard 175
                  +    +r++vvG+G++++ +A +++  g+  v++++  +
   KIR61608.1 163 DGVAGRRVAVVGSGVVALLTALFARHHGAAsVVVLDPTP 201
                  33444999**************99999886588777665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00012      0.19       1      27 [.     172     199 ..     172     203 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
                    EE--SHHHHHHHHHHHCCTE.EEEEE-S CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagf.dvlllek 27 
                    +vG+G+ +l++A +++ +g+ +v++l+ 
     KIR61608.1 172 VVGSGVVALLTALFARHHGAaSVVVLDP 199
                    8*****************8868***996 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00036      0.59       3     100 ..     173     264 ..     172     267 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00036
  Methyltransf_24   3 iGvysGvstlwllralrrngagrlvavdhdpgaeeaaalare.......aglddrvrlikadseealaslaagsiDllfiDgghaaeavledle 89 
                      +G  sGv +l+ +  +r++ga ++v++d+ p   + +a+a+         g dd + ++k + ++a+++   +  D++f     + +  +++l+
       KIR61608.1 173 VG--SGVVALLTALFARHHGAASVVVLDPTP---QRRAVAEAlglqtldPGADDPAVVLKTRWNHAAGD---RGADVVF-----QCRGQAWALQ 253
                      57..9**************************...88999998333334444444455555555555332...3345554.....3344555555 PP

  Methyltransf_24  90 allprlapggv 100
                      ++l++l+p+g+
       KIR61608.1 254 LALRLLRPQGT 264
                      55555555555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.8e-05      0.16      28      80 ..     159     212 ..     144     220 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.8e-05
                   CGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHHHTC CS
  2-Hacid_dh_C  28 allgkelsgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeeelgv 80 
                   + lg  ++g++v+++G G ++  +a  ++  g+  v++ d+++++++ +e+lg+
    KIR61608.1 159 RSLGDGVAGRRVAVVGSGVVALLTALFARHHGAaSVVVLDPTPQRRAVAEALGL 212
                   5678889**********************999879*******998876666655 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       6.5   1.1e+04      33      43 ..       4      14 ..       2      17 .. 0.83
   2 ?   10.8   0.1   0.00019       0.3      29      64 ..     164     199 ..     154     211 .. 0.91

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 6.5
                   EEEEEE--SHH CS
  ELFV_dehydrog 33 krvaisGsGnv 43
                   + v++sG+G v
     KIR61608.1  4 RVVVVSGPGRV 14
                   6799*****87 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00019
                    -STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEES CS
  ELFV_dehydrog  29 slegkrvaisGsGnvgsyaallltelgakvvavsDs 64 
                     ++g+rva+ GsG v+  +al++ ++ga  v v D 
     KIR61608.1 164 GVAGRRVAVVGSGVVALLTALFARHHGAASVVVLDP 199
                    589**************************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2551.46
//
Query:       KIR61609.1  [L=764]
Description: preprotein translocase subunit SecA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-81  274.3   0.0    2.3e-81  273.3   0.0    1.5  1  SecA_DEAD     SecA DEAD-like domain
    1.1e-24   87.2   0.0    2.6e-24   86.0   0.0    1.6  1  SecA_PP_bind  SecA preprotein cross-linking domain
    2.9e-22   79.7   0.4      6e-14   52.6   0.0    2.3  2  SecA_SW       SecA Wing and Scaffold domain


Domain annotation for each model (and alignments):
>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.3   0.0   3.9e-85   2.3e-81      23     284 ..      34     374 ..      14     382 .. 0.92

  Alignments for each domain:
  == domain 1  score: 273.3 bits;  conditional E-value: 3.9e-85
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
   SecA_DEAD  23 ineleeelkalsdeeLrakteelkerlaegealdellpeafalvreaakrvlgmrhydvQliGglvlhegkiaemkTGEGKtlvatlpaylnaltgk.g 120
                 i+  eeel+al+d+eL++ + +            +   e  a+ reaa+r l++r+ydvQl+G+++l +gk+aem+TGEGKtl+at++ay +   g+ +
  KIR61609.1  34 IEGREEELSALTDAELTEAAGSA-----------TGYEEICAIGREAARRGLDQRPYDVQLLGAMALLSGKVAEMATGEGKTLTATIAAYGHVRLGNgP 121
                 55555555555555555443332...........33457789************************************************987666516 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD 121 vhvvtvndYLakrdaewmgpvyeflGlsvgvieseleseerreaYeaditYgtnnelgfdyLrDnlalskeelvqrglnfaivDEvDsvLiDeArtpLi 219
                 vhv+tvndYLa+rda+wm+pvy +lGl+vg +++  +++err+aY++d+tY++ +e gfdyLrD+l+++ +++vq  l  aivDE+Ds+LiDeAr p++
  KIR61609.1 122 VHVLTVNDYLARRDARWMEPVYALLGLTVGSVSEASTPQERRDAYACDVTYVSVSEAGFDYLRDQLVTDLDDRVQPALRTAIVDEADSILIDEARVPMV 220
                 *************************************************************************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................................ RF
   SecA_DEAD 220 isgpaeeeselyeeakklvkeleeeed........................................................................ 246
                 ++g    e++ +++a++lv+ l++ ++                                                                        
  KIR61609.1 221 LAGAVGGEQDPVHAAAALVRGLRKGKHytvaedgrsvaftsaglaaveaklggidlydtehvgqlsavnvalhahallhrdvdyivrdgsvelidemrg 319
                 ****999*************9999999999999****************************************************************** PP

                 .................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD 247 .................akegveieeesqtlatitlqnffrlYeklaGmtGTaet 284
                                  akeg++ + e ++l ti++q +  lY k++Gmt Ta  
  KIR61609.1 320 rvaqrrrwpdglqaaveAKEGLDATAEGEVLGTIAVQAYIALYPKVCGMTATAVL 374
                 *****************************************************75 PP

>> SecA_PP_bind  SecA preprotein cross-linking domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.0   4.3e-28   2.6e-24       8     111 .]     234     336 ..     228     336 .. 0.95

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 4.3e-28
                   HHHHHHCCCHTTCCECCCTTTSEEEESHHHHHHHHHCCT-SSSTTSCCHCCHHHHHHHHHHHHHCSTTTTTEEECTTCEEEBSTTTSSEBTS--SST CS
  SecA_PP_bind   8 kanklvkklkeeedyevdekkktveltekGvekvekllkvkeelydeenlelvhhvnqaLkAhtlferdvdYivkdgeviivDeftGRlmegrrysd 104
                   +a++lv+ l++ ++y+v e  ++v++t +G++ ve+ l+   +lyd+e++  + +vn aL+Ah+l++rdvdYiv+dg+v ++De  GR+ + rr+ d
    KIR61609.1 234 AAAALVRGLRKGKHYTVAEDGRSVAFTSAGLAAVEAKLGG-IDLYDTEHVGQLSAVNVALHAHALLHRDVDYIVRDGSVELIDEMRGRVAQRRRWPD 329
                   567788999*****************************77.7******************************************************* PP

                   THHHHHH CS
  SecA_PP_bind 105 GLhqaie 111
                   GL+ a+e
    KIR61609.1 330 GLQAAVE 336
                   *****98 PP

>> SecA_SW  SecA Wing and Scaffold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.8   3.6e-09   2.1e-05       4      53 ..     573     622 ..     570     630 .. 0.91
   2 !   52.6   0.0     1e-17     6e-14     117     197 ..     632     714 ..     624     716 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.6e-09
                 SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
     SecA_SW   4 sklvsksienaQkkvEernfdiRknlleYDdVmnkQRkviYkqRrevLeg 53 
                  + v+ ++e+aQ+  E+ n +i +n+ +Y  V+++QRk+  ++R+++L++
  KIR61609.1 573 DPQVDYAVEHAQRVAEGVNHEIHRNTWRYSVVIEQQRKALAERRERLLTS 622
                 678999******************************************54 PP

  == domain 2  score: 52.6 bits;  conditional E-value: 1e-17
                 HHHHHHHHC..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTSSSS-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCC CS
     SecA_SW 117 ayekkeeei..ellrelervvlLevlDkaWkehLdamdeLregiglrgygqkdPlqeYkkegfelFeemlarikeevvkkllk 197
                 ++ +k+ee+  +ll +  r+++L  lD+ W ehL +++e reg++lr++g  dPl e+++ ++  F++++ +i+ +++ ++++
  KIR61609.1 632 RVPEKAEEMdeDLLARAARSIALFHLDRLWAEHLAELSEVREGVHLRALGRLDPLDEFHRAAVPAFNALVPEIEARTIATFTE 714
                 444566666655699999**********************************************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 5686.68
//
Query:       KIR61610.1  [L=166]
Description: hypothetical protein TK50_29080 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-10   40.6   6.0    3.7e-10   40.1   6.0    1.2  1  DUF2231   Predicted membrane protein (DUF2231)


Domain annotation for each model (and alignments):
>> DUF2231  Predicted membrane protein (DUF2231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   6.0   2.1e-14   3.7e-10       3     103 ..      44     140 ..      42     141 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 2.1e-14
     DUF2231   3 evglwnlvaalvigflaalaGlvelllaepsirakktallHavggvlllalivaltvWrfvlrlreee.qvsplylalslvvvvlllvqgwlGaeLvye 100
                 evg+w  vaalv+++l  +aG+v+l  a + +r+++t ++  ++++++ al+++      ++r++ ++  ++ ++la++lv+++l ++ +wlGa+L+ +
  KIR61610.1  44 EVGYWTSVAALVAAALSTVAGMVDLWDA-AGERTRRTKITFNLVNAAMAALFLL----TCLIRAHSPQrGATGVMLAAELVALGLGGAGVWLGARLMRQ 137
                 89**************************.*************************....**********999**************************99 PP

     DUF2231 101 fgv 103
                 f  
  KIR61610.1 138 FEA 140
                 975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1274.21
//
Query:       KIR61611.1  [L=253]
Description: methyltransferase type 11 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-07   31.9   0.0    4.2e-07   30.5   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
      8e-05   23.3   0.0     0.0002   22.0   0.0    1.7  2  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   4.7e-11   4.2e-07       1      95 [.      55     142 ..      55     143 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 4.7e-11
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                      Ldv +G+G +++++ +  + +++++ ++  +++a+++ +  g    ++va+   lp++d+  Dlvvs++ +h+       ++eiaRvL+pgG++
       KIR61611.1  55 LDVDTGGGEVLAEVPRPPRVLLATEAWPPNVEVARRNLRAVGA-TVLQVAEGGGLPVADAALDLVVSRHPVHTP------WDEIARVLRPGGTF 141
                      78999**********99999*********************97.5668888889**************988887......79**********98 PP

                      E CS
  Methyltransf_11  95 v 95 
                      +
       KIR61611.1 142 L 142
                      5 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.2e-08    0.0002       2      97 .]      55     139 ..      54     139 .. 0.85
   2 ?   -3.0   0.0       1.4   1.2e+04      22      36 ..     180     194 ..     172     203 .. 0.61

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.2e-08
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkp 95 
                      Ld+ +G G++++++ +  +   +++++  +  +e ar+++++ g    +++++   lp +d+  Dlvvs++ +h  +        +eiarvL+p
       KIR61611.1  55 LDVDTGGGEVLAEVPRP-P-RVLLATEAWPPNVEVARRNLRAVG-ATVLQVAEGGGLPVADAALDLVVSRHPVHT-P-------WDEIARVLRP 137
                      89999********9987.4.999*****************7554.45567799999*************644443.3.......579******* PP

                      EE CS
  Methyltransf_25  96 gG 97 
                      gG
       KIR61611.1 138 GG 139
                      *9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
                      SEEEEEESSHHHHHH CS
  Methyltransf_25  22 akvtgvDiseemlea 36 
                      a +t +D+ e+ l++
       KIR61611.1 180 AGLTVLDLREATLRT 194
                      556667776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1908.13
//
Query:       KIR61612.1  [L=316]
Description: hypothetical protein TK50_29090 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-80  271.1   0.0    1.5e-80  270.8   0.0    1.0  1  DUF3500   Protein of unknown function (DUF3500)


Domain annotation for each model (and alignments):
>> DUF3500  Protein of unknown function (DUF3500)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.8   0.0   8.6e-85   1.5e-80       6     295 ..       7     303 ..       4     304 .. 0.95

  Alignments for each domain:
  == domain 1  score: 270.8 bits;  conditional E-value: 8.6e-85
     DUF3500   6 eavveaaeaflatLseeqrakallelddeerrkW.snlpfllk.rkGlrleelseeqrkaalalLkaalSkeGyekalsimkleevLde.......... 92 
                 e++++a +++l +L+++ r++a++ +dd+ +r+W ++ p   + r+G+ l++l+++ rkaa++lL++alS+++y++a+++++leevLd+          
  KIR61612.1   7 EQMRAAGTTLLGALDDSARTRATHRFDDDAARRWlEYRP---RpRPGVCLADLDRAGRKAAHRLLATALSPAAYAQAMAVVALEEVLDRaegwrrgrhs 102
                 6899********************88********67777...55*******************************************777766666666 PP

     DUF3500  93 geYylalfGePsstepWgwrfeGHHlslnvtvvdgevvsitPtflGaePaeidegeekglriLakeedlalellqsLseeqqkkavlsekaprdlvgan 191
                 g+Y++a+fG+P +++ W+wrfeGHHls+++tvv +++vs +P+flGa+Pa++ +  +   r+L+ eedl+++ll+++ ++ +++a ++++ap+d+v+a+
  KIR61612.1 103 GDYWVAVFGDPARDDRWAWRFEGHHLSVSMTVV-DDQVSPAPVFLGANPAAVRHAGHPVSRPLGVEEDLGRALLDAIGPAGRAAAIVADDAPADIVSAT 200
                 88*********99********************.9999*************88888888**************************************** PP

     DUF3500 192 rdnr..vvpkeGvavseltaeqqelllalikeylerlpeeaaeerlaeiekeldetyfaWiGgtekgdphYyriqgpvvliEfdntsgqnknHiHtvlR 288
                 r+++  + ++ Gv++++l ++ ++ll +l+++yl+rlp+++a+++++++      ++faW+G+t++g++hYyr+qg+++liE+dnt + + nH+HtvlR
  KIR61612.1 201 RPRVagQIAPLGVPADRLGPTGRALLDQLVAVYLDRLPPQLAAREARRLAGG--PLHFAWAGPTGPGQRHYYRVQGDDLLIEYDNTAD-DGNHAHTVLR 296
                 ***999999************************************9988775..99******************************77.8********* PP

     DUF3500 289 dpnnDyG 295
                 +p +D+G
  KIR61612.1 297 RPASDFG 303
                 ******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2051.49
//
Query:       KIR61613.1  [L=127]
Description: signal peptidase I [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   14.4   0.4      0.025   14.3   0.4    1.1  1  Cupin_6   Cupin


Domain annotation for each model (and alignments):
>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.4   1.4e-06     0.025      16      73 ..      44     100 ..      22     122 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-06
     Cupin_6  16 lffrsaltapwslrfpaglalhvvlrGscwlidpasgepvrLsagdvvllpggephvl 73 
                 +++ ++++  w+   +  + l++v  G+ ++++p+ ++ +  ++gd v+  +g  h  
  KIR61613.1  44 VHAAGEARSRWATGERRTALLVLVSGGRFRVELPD-RTVLLAEPGDYVVWGRGVDHSW 100
                 5566677777777666569999**********999.55677788*********99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.31s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 809.51
//
Query:       KIR61614.1  [L=153]
Description: cysteine dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-24   84.0   0.4      4e-23   81.6   0.4    1.8  1  CDO_I     Cysteine dioxygenase type I
    7.9e-05   22.3   0.6    0.00014   21.5   0.6    1.4  1  Cupin_2   Cupin domain


Domain annotation for each model (and alignments):
>> CDO_I  Cysteine dioxygenase type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.4   4.5e-27     4e-23      35     166 ..      13     134 ..       8     136 .. 0.91

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 4.5e-27
                 HHHHHS---HHHHGGG----SSS-EEEEE-GGGT-EEEEEEE-TT-B--EE--TT-EEEEEEEES-EEEEEE----SS-----EEEEEE--TT-EEEE- CS
       CDO_I  35 slveayksdaveWaklakfdpekytrnlvagngksellllcWgpGtassvHDHtdsvgalkllaGeLkEtkfAwalkrleesdivdekrllsngtayvn 133
                 ++ ++y +d++ W    +f pe++   ++a  +  e++ l+W+pG+++ +HDH++s ga+ +++G L+E        rl +        +l  g ++ +
  KIR61614.1  13 AVAARYAADPAGWPVPLRFHPEHRWYARLAVAADHEVWALSWLPGQGTDLHDHGGSSGAFLVVDGVLTEETVSG--GRLRP-------HRLAAGAGRRF 102
                 67889****************************************************************97654..44444.......4577899999* PP

                 TTT-EEEEEES-SSS-EEEEEEEES--SEEEEE CS
       CDO_I 134 delglHrveNlSsdegAVSlHlYaPPldtiray 166
                 +  ++H v N   d++AVS+H+Y P l  +++y
  KIR61614.1 103 GARHVHVVTNRD-DQPAVSVHVYRPALTRMTRY 134
                 ***********9.*******************9 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.6   1.5e-08   0.00014       6      71 .]      55     124 ..      51     124 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.5e-08
                 ETTEEEEEECSSSEEEEEEEEESEEEEE.ECTE...EEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEEE CS
     Cupin_2   6 ppGesapshrHpgedeffyVleGegelt.vdge...eveleaGdsvyfpagtpHrfrNtgdeparllvvy 71 
                  pG+ +  h H g+   f V++G ++ + v g    +++l aG    f a   H + N+ d+pa+ + vy
  KIR61614.1  55 LPGQGTDLHDHGGSSGAFLVVDGVLTEEtVSGGrlrPHRLAAGAGRRFGARHVHVVTNRDDQPAVSVHVY 124
                 699999******************888889877799****************************988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1126.11
//
Query:       KIR61615.1  [L=165]
Description: sulfurtransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-08   34.5   0.0      3e-08   34.1   0.0    1.1  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.7e-12     3e-08      13     105 ..      49     136 ..      38     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1.7e-12
   Rhodanese  13 kvallDvRppeeYek.ghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvldGGfkawk 105
                 ++ l+D+Rp+++ ++ g +pgA+ +      r+  + +++  + ++l +  + ++ +vvv+c++g  ++ aaa+l+  G++    + GGf aw 
  KIR61615.1  49 GALLVDIRPAAQRAAhGTVPGALAI-----ERNVLEWRFDPRCAARLPQA-VGYDVPVVVLCQEGYTSSLAAAALQDIGLHCATDVVGGFAAWR 136
                 335*****99999888*********.....89999999999999999997.****************9999999999**888***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1145.05
//
Query:       KIR61616.1  [L=235]
Description: hypothetical protein TK50_29110 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-23   82.8   0.3      3e-23   81.7   0.1    1.6  2  Trans_reg_C  Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
      0.027   14.4   1.8       0.17   11.8   0.1    2.7  2  MarR_2       MarR family


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.56     5e+03       4      17 ..      56      69 ..      54      73 .. 0.84
   2 !   81.7   0.1   3.3e-27     3e-23       4      77 .]     154     223 ..     150     223 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.56
                 EE-SHHHHHHHHHH CS
  Trans_reg_C  4 veltpkefklLelL 17
                  +ltp+  +l elL
   KIR61616.1 56 GQLTPRLARLVELL 69
                 68999999999998 PP

  == domain 2  score: 81.7 bits;  conditional E-value: 3.3e-27
                  EE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   4 veltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  + lt+ ef+lL++L+enp+rv++r +Ll++vwg+++   +rtvdvh++rLR kL++   ++ l+ tv+gvGYrl
   KIR61616.1 154 IPLTRIEFDLLHFLAENPRRVFTRLQLLSNVWGYEH-AIARTVDVHVRRLRAKLGA---ATPLVTTVYGVGYRL 223
                  89*********************************9.99*****************...557**********97 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.091   8.2e+02      48      62 .]      29      43 ..      27      43 .. 0.88
   2 ?   11.8   0.1   1.9e-05      0.17       3      34 ..     156     209 ..     154     216 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.091
                TTSEEEEESSSSSSS CS
      MarR_2 48 aGLverrpgpeDkRa 62
                aG v r+p+p+++R+
  KIR61616.1 29 AGRVDRVPSPGHARS 43
                57799********96 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 1.9e-05
                 --HHHHHHHHHHHCTTTS......................EEEHHHHHHHHTSS CS
      MarR_2   3 ltpaqarvLaaLgrrpgr......................dltvgelarrlgls 34 
                 lt+ ++++L++L+ +p+r                      d+ v+ l ++lg  
  KIR61616.1 156 LTRIEFDLLHFLAENPRRvftrlqllsnvwgyehaiartvDVHVRRLRAKLGAA 209
                 89**************99888888888888888888877777777777777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 2082.17
//
Query:       KIR61617.1  [L=201]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-21   74.9   0.1    7.3e-21   74.0   0.1    1.4  1  Trans_reg_C  Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.1   4.1e-25   7.3e-21       2      77 .]     118     189 ..     117     189 .. 0.95

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 4.1e-25
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  e++ lt+ ef+lL  L+++p+rv++r +Ll++vwg+++    rtvdvh++rLR k++    +  l+ tv+gvGYrl
   KIR61617.1 118 EPLPLTRLEFDLLLHLVAHPRRVFTRLQLLNAVWGYEH-AGVRTVDVHVRRLRGKVGV---DVPLVTTVYGVGYRL 189
                  789**********************************9.99*****************...446**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1461.35
//
Query:       KIR61618.1  [L=212]
Description: uridine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1496.94
//
Query:       KIR61619.1  [L=132]
Description: conjugal transfer protein TraR [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-08   34.8   2.4    1.9e-08   34.1   2.4    1.4  1  zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
  ------ inclusion threshold ------
      0.071   13.1   0.0       0.12   12.3   0.0    1.4  1  GPAT_N        Glycerol-3-phosphate acyltransferase N-terminal
        0.1   12.0   0.0       0.16   11.4   0.0    1.2  1  FAM35_C       Protein family FAM35, C-terminal


Domain annotation for each model (and alignments):
>> zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   2.4   3.2e-12   1.9e-08       1      36 []      94     129 ..      94     129 .. 0.97

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 3.2e-12
  zf-dskA_traR   1 giygsCeeCGEpIpeaRlralPgarlCveCqekaer 36 
                   g+yg+Ce+C  pIp +Rl++ P a+ Cv C++ +er
    KIR61619.1  94 GTYGFCEGCSAPIPVERLEIFPSATACVTCKQSRER 129
                   89******************************9997 PP

>> GPAT_N  Glycerol-3-phosphate acyltransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.1e-05      0.12      18      50 ..      11      43 ..       4      49 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.1e-05
      GPAT_N 18 rkeveagkLpanvaagmeelYqNYknAVlqsGi 50
                r +++ +++ a + a++eel   Y +AVlqs +
  KIR61619.1 11 RSQADTDQIRASLRARYEELSAEYEQAVLQSQV 43
                6788999999*********************76 PP

>> FAM35_C  Protein family FAM35, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.7e-05      0.16      22      79 ..      70     127 ..      63     131 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.7e-05
     FAM35_C  22 saqkaqlvldastslesilaslsditytGCakCgleletDenkiykqCysCLpltavk 79 
                 +++  +++ld+++  e+ l  l + ty  C+ C++ + +++ +i+    +C+ +++ +
  KIR61619.1  70 AQSLLRTILDRRAQFERALGRLDEGTYGFCEGCSAPIPVERLEIFPSATACVTCKQSR 127
                 555567899************************************9999999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       911  (0.0508115); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 953.65
//
Query:       KIR61620.1  [L=291]
Description: hypothetical protein TK50_29130 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-62  211.3   0.8      2e-62  211.2   0.8    1.0  1  DUF72     Protein of unknown function DUF72


Domain annotation for each model (and alignments):
>> DUF72  Protein of unknown function DUF72
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.2   0.8   1.1e-66     2e-62       1     217 [.      22     285 ..      22     286 .. 0.90

  Alignments for each domain:
  == domain 1  score: 211.2 bits;  conditional E-value: 1.1e-66
                 B.TT..CCC.HHHHHCCT-SEEEE-HHCCSSS-HHHHHHHHCTS-TT-EEEEE--CCCCCS...........................G-SCHHHHHHH CS
       DUF72   1 Ypeglkkke.rLeyYarhfntVEinstFYalpspetvakwaaqtpedFrFavKapraithe..................r........nedaeealerf 72 
                 Yp+++ + e rL+yYa++f++VE+++t+Y++p ++t++ wa++tp++F+F vKa++ +t +                  +        +   ee ++rf
  KIR61620.1  22 YPQTADTPEkRLSYYAKQFPLVEVDATYYSPPAERTARLWAERTPAGFTFNVKAFSLLTGHptrvsalykdlrpdtdkrNvypgdlpaQ-AYEEVWTRF 119
                 9999999888**************************************************87777777777777666551555554332.589****** PP

                 HHH.CHHH..CT-EEEEEEE--TT--S.HHHHHHHHHH...TTTS-S.EEEE--BGGGH......HHHHHHHHTT-E.EEEE--..SSC--------SS CS
       DUF72  73 lesalepL..geklgpllfQlppsfkfdeenlerLeaf...laalpl.lavEvRhrswf......ellellrehgva.vvldep..kkpklpledvtta 156
                 l + l+pL  +++lg+llfQ+pp+f+ +++n ++L ++   +a  pl  ++E+Rh+swf      e+l +lreh++a v++d+p  + +++p+  ++ta
  KIR61620.1 120 LSA-LDPLveAGRLGALLFQFPPWFTIKRDNKQYLLEVarrCA--PLrPVFEFRHASWFagdnrdETLGFLREHELAyVCVDMPqgHRSSVPPVLAATA 215
                 **6.****988**************9998899***99954433..4448*********99***855***********888898899999********** PP

                 TEEEEEE--S.........HHTTB----HHHHHHHHHHHHHHHTCSSEEEEEE-SBCCCHHHHHHHHHHH CS
       DUF72 157 dfvyvRlhgr.........eeryayrYseeelaewaerikawaaegrevyvffnndaegqaplnaraLae 217
                 d+++vR+hg+         +e++ y+Ys++el++wa +++++a+ + e++v++nn+++++a +n ++L+ 
  KIR61620.1 216 DLAVVRFHGHsakwtskdiHEKFGYDYSDRELRDWAPKLRTLADDAGETHVLMNNCYRDYAQRNGQRLQS 285
                 ******************659**********************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1954.71
//
Query:       KIR61621.1  [L=80]
Description: hypothetical protein TK50_29135 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.017   15.4   0.1      0.021   15.1   0.1    1.2  1  DUF349          Domain of Unknown Function (DUF349)
      0.044   13.0   0.7      0.042   13.1   0.7    1.2  1  DUF4106         Protein of unknown function (DUF4106)
      0.092   12.9  10.3       0.11   12.7  10.3    1.2  1  Metal_resist    Heavy-metal resistance
       0.12   11.3   1.3       0.13   11.2   1.3    1.0  1  Cytochrom_C552  Cytochrome c552
       0.19    9.2   2.9       0.21    9.1   2.9    1.0  1  DUF3584         Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> DUF349  Domain of Unknown Function (DUF349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.1   5.8e-06     0.021       5      45 ..      11      51 ..       8      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.8e-06
      DUF349  5 rFraacdafferrkahfeeqdaereenlekKealieeaeal 45
                 +r+a+ a+ +++++ + +qda r++  +  ea+++ea+a 
  KIR61621.1 11 AYRSAQSAVDAAKAQVRTSQDALRQARRDLGEAIVAEARAG 51
                799***********************************986 PP

>> DUF4106  Protein of unknown function (DUF4106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   1.2e-05     0.042      94     135 ..       7      45 ..       1      71 [. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
     DUF4106  94 kitdaatrqavqsaydavratvvesqekelqqtkkdlvnafl 135
                   t  a+ ++ qsa da +a v  sq+  l+q+++dl +a++
  KIR61621.1   7 SAT--AAYRSAQSAVDAAKAQVRTSQD-ALRQARRDLGEAIV 45 
                 433..445567***********99997.69*******99976 PP

>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7  10.3   2.9e-05      0.11      49     110 ..      13      74 ..       1      78 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.9e-05
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH CS
  Metal_resist  49 aelraalrdharelralrrelraarrelaallaaepfDaaaieaalaeiraaqaalraqiee 110
                   + ++ a+++++ ++r  + +lr+arr+l+++++ae   + + ++++a++  +++ +r+++ +
    KIR61621.1  13 RSAQSAVDAAKAQVRTSQDALRQARRDLGEAIVAEARAGTRMRDLVAATGLSREWIRTLLRQ 74 
                   57899*******************************99999999999999888888777665 PP

>> Cytochrom_C552  Cytochrome c552
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.3   3.5e-05      0.13     330     392 ..       3      65 ..       1      76 [. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.5e-05
                     HHHHHHHHHHHHHHHHHHHHHSSTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TS CS
  Cytochrom_C552 330 eelkearelirkaqwrldfvaAensagfHaPeealrvlasavdkaakarlklakllakagvkd 392
                     ++l++a  ++r aq  +d ++A+  +   a ++a r l++a+ + a+a +++++l+a++g+++
      KIR61621.1   3 QDLASATAAYRSAQSAVDAAKAQVRTSQDALRQARRDLGEAIVAEARAGTRMRDLVAATGLSR 65 
                     6789999****************************************************9987 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.9   5.8e-05      0.21     468     522 ..       3      57 ..       1      64 [. 0.90

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 5.8e-05
     DUF3584 468 eqieeadealekaqeelekaeaevealqaeeeqlrkkrdeadealqkaerrleql 522
                 ++++ a +a + aq+++ +a+a+v+  q++++q+r +  ea  a  +a  r+++l
  KIR61621.1   3 QDLASATAAYRSAQSAVDAAKAQVRTSQDALRQARRDLGEAIVAEARAGTRMRDL 57 
                 68899999*********************************99999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1219  (0.0679904); expected 358.6 (0.02)
Passed bias filter:                      739  (0.0412181); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 595.51
//
Query:       KIR61622.1  [L=195]
Description: hypothetical protein TK50_29140 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1360.18
//
Query:       KIR61623.1  [L=236]
Description: hypothetical protein TK50_29145 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-06   27.7  16.2    2.3e-06   27.1  15.7    1.5  1  ABC2_membrane_2  ABC-2 family transporter protein
    1.6e-05   25.0   2.6    1.6e-05   25.0   2.6    2.0  2  ABC2_membrane_4  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1  15.7   2.6e-10   2.3e-06      80     209 ..      54     169 ..      49     229 .. 0.68

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2.6e-10
  ABC2_membrane_2  80 imavlipviaalfgadaiagEkergTlkllLskPvsRdeillgKfigglaiglaiavallatvllalaiilalgivlaledllllvvasvllll 173
                       +av++pv+a++ g  ++  E ++gT+   L+kP +R++i+l K+    a+       +++tv l l     l ++ +l+  l  + a+    +
       KIR61623.1  54 GLAVVLPVVALIVGTGVLGAEIDDGTVVHILTKPLPRWQIVLPKLAVATAV-------TGVTVALPLYAAGLLADSARLGLALAAASAVG---A 137
                      5799****************************************9888888.......66665554555555555555544333333333...3 PP

  ABC2_membrane_2 174 lvvflalglllSsvarssreaaalalglfvvlailv 209
                      l ++ al+l+lS ++r   +  +l l+ +++   l 
       KIR61623.1 138 L-AYSALFLALSLLTR---RPVLLGLVYVLIWEGLL 169
                      2.46999999999999...33344444444444444 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   2.6   1.7e-09   1.6e-05      22     170 ..      25     173 ..      14     183 .. 0.65
   2 ?    1.5   1.1     0.027   2.4e+02     106     160 ..     158     211 ..     153     224 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.7e-09
  ABC2_membrane_4  22 allvpllallyfnllgktgldpaefyslsvfgftlllllplilgiiasylifrEeqndtlknLltiPvsrtklllaKlivll.llsvllmlvtf 114
                      +++++ la+l  ++    g+ p  +     +g++l ++lp++  i+++ ++  E +++t+  +lt P  r +++l Kl+v   ++ v + l ++
       KIR61623.1  25 PMVLVGLAVLS-RW---LGVTPRDWGPPVLVGLGLAVVLPVVALIVGTGVLGAEIDDGTVVHILTKPLPRWQIVLPKLAVATaVTGVTVALPLY 114
                      22222233222.33...457778888888899999*******************************************9975155566666677 PP

  ABC2_membrane_4 115 litvlfallsgfvgfsvklvlellkkclelgllvffavlpi...ialvllkksyvlpli 170
                      ++ +l+     + ++ +++ + +l  + ++ +l++++  p+   ++ vl++++ + +++
       KIR61623.1 115 AAGLLADSARLGLALAAASAVGALAYSALFLALSLLTRRPVllgLVYVLIWEGLLGSVV 173
                      77777744444444555554444554444444444444444111445677777777765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.027
  ABC2_membrane_4 106 svllmlvtflitvlfallsgfvgfsvklvlellk.kclelgllvffavlpiialvl 160
                       ++++l+  +  +l +++sg  ++s+++ +++l  ++  + ll++ +++p+ a+++
       KIR61623.1 158 GLVYVLI--WEGLLGSVVSGTRVLSIQQYVITLAdRIAPTDLLLADVSVPVAAVMS 211
                      4455554..78899999999999999996665552666888888888888877643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1542.21
//
Query:       KIR61624.1  [L=319]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-23   82.3   0.0    7.2e-23   81.6   0.0    1.4  1  ABC_tran  ABC transporter
      3e-12   47.0   1.4    2.5e-07   30.8   0.0    2.1  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    6.4e-05   23.5   0.0    9.6e-05   23.0   0.0    1.2  1  AAA_23    AAA domain
     0.0016   18.6   0.0     0.0034   17.6   0.0    1.6  1  SbcCD_C   Putative exonuclease SbcCD, C subunit
      0.003   18.0   0.0     0.0052   17.2   0.0    1.4  1  AAA_16    AAA ATPase domain
     0.0045   16.7   0.1     0.0096   15.7   0.1    1.5  1  AAA_29    P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.032   13.9   0.0    1.4  2  AAA_15    AAA ATPase domain
      0.051   13.8   0.3       0.29   11.4   0.3    2.0  1  AAA_22    AAA domain
      0.061   13.0   0.6       0.15   11.7   0.4    1.8  1  AAA_30    AAA domain
      0.061   13.8   0.1       0.39   11.1   0.1    2.2  1  AAA       ATPase family associated with various cellular acti
      0.082   12.3   0.1       0.19   11.2   0.0    1.5  2  SMC_N     RecF/RecN/SMC N terminal domain
       0.23   11.0   0.4       0.44   10.1   0.4    1.4  1  cobW      CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   4.8e-26   7.2e-23       2     137 .]      36     175 ..      35     175 .. 0.94

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 4.8e-26
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...........esdeeiekal 89 
                 ++vs++l +g +++++G+nGaGK+tLl ++ag l p  G ++l g+++ +   +++ +++g +++ + ++  lt++e            e  + + +a+
  KIR61624.1  36 NDVSMSLGPG-VTGLLGPNGAGKTTLLHMMAGFLAPSRGVVTLGGRPTWR--NPEVYRRLGLVSEREAVQTYLTAYEFvlasaklhrlaEPAAAARRAI 131
                 7899999998.78*********************************9999..7888999********************99999988877777799999 PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 + ++l++ +d+++     ++S+G++qr  +a+al+ +p++lllDEp++
  KIR61624.1 132 ALVELEGAQDRRI----GTYSKGMRQRARVAAALVHEPQVLLLDEPFN 175
                 9******9****9....*****************************86 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.3   9.6e-06     0.014       1      18 [.      46      63 ..      46      81 .. 0.85
   2 !   30.8   0.0   1.7e-10   2.5e-07     222     298 ..     132     205 ..      94     210 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9.6e-06
      AAA_21  1 lnvliGpNgsGKSnLLda 18
                +++l GpNg+GK++LL  
  KIR61624.1 46 VTGLLGPNGAGKTTLLHM 63
                699************965 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 1.7e-10
      AAA_21 222 vflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                  ++e ++ q++ +   S G+++ +++++al   +    +ll+DEp ng++P+   + +ell +l + g  +++++H 
  KIR61624.1 132 ALVELEGAQDRRIGTYSKGMRQRARVAAALVHEP---QVLLLDEPFNGMDPRQRLHMMELLHRLGDAGRTILFSSHI 205
                 567778999999*******************999...9*************9999999999555556*********5 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   6.5e-08   9.6e-05      11      37 ..      36      62 ..      29      69 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 6.5e-08
      AAA_23 11 rdqeidFskgltlItGpNGaGKTTild 37
                +d++  +++g+t + GpNGaGKTT+l 
  KIR61624.1 36 NDVSMSLGPGVTGLLGPNGAGKTTLLH 62
                5677889******************96 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.3e-06    0.0034      60      89 ..     161     190 ..     138     191 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.3e-06
     SbcCD_C  60 repalrlvfLDEAFsklDeesiatllelle 89 
                   + +++++LDE F+++D++ +  ++ell+
  KIR61624.1 161 LVHEPQVLLLDEPFNGMDPRQRLHMMELLH 190
                 457799**********************97 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.5e-06    0.0052      24     143 ..      44     172 ..      33     202 .. 0.52

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.5e-06
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.........avpelag 113
                 p+++ l G+ G GK++l+ + +  l  ++g+++ g      ++ + +  + + +++e ++  l++ e   +  +++kl++ ++         a  el+g
  KIR61624.1  44 PGVTGLLGPNGAGKTTLLHMMAGFLAPSRGVVTLGGRPTW-RNPEVYRRLGLVSEREAVQTYLTAYE---FVLASAKLHRLAEpaaaarraiALVELEG 138
                 3777899****************99999988855555555.34333332222223355555555522...23333333333331113333333444444 PP

      AAA_16 114 aea......srllellkrll.allsrderplvlvlDd 143
                 a+       s     +++ + + ++  ++p vl+lD+
  KIR61624.1 139 AQDrrigtyS---KGMRQRArVAAALVHEPQVLLLDE 172
                 4445563352...333333322222223456777764 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   6.4e-06    0.0096      18      50 ..      41      72 ..      28      76 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.4e-06
      AAA_29 18 eidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                ++   g+t l Gp+G+GK+Tll  ++  L p++
  KIR61624.1 41 SLG-PGVTGLLGPNGAGKTTLLHMMAGFLAPSR 72
                333.24899*************88888887775 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.2e-05     0.032      15      50 ..      36      71 ..      34      88 .. 0.91
   2 ?   -3.2   0.0       3.5   5.3e+03     324     364 ..     165     204 ..     163     204 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.2e-05
      AAA_15 15 kdveidlseeltvliGkNnsGKSsilealdlFlnnk 50
                 dv+++l + +t l G+N++GK+++l+++  Fl  +
  KIR61624.1 36 NDVSMSLGPGVTGLLGPNGAGKTTLLHMMAGFLAPS 71
                5789999999*******************9998765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.5
      AAA_15 324 nvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 + +ll++EP +   p +  ++++ll +l + ++  +++++H
  KIR61624.1 165 PQVLLLDEPFNGMDPRQRLHMMELLHRLGDAGR-TILFSSH 204
                 5688999999999999999*****999999887.5666666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   0.00019      0.29       7     117 ..      46     194 ..      42     209 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee............erpevv....fvtlpsst.sskdllrellralglelka.................. 70 
                 ++ + G+ G+GKTtll +++  l                    ++pev+    +v   +   +  + ++ +l   +l + a                  
  KIR61624.1  46 VTGLLGPNGAGKTTLLHMMAGFLAP-----SrgvvtlggrptwRNPEVYrrlgLVSEREAVqTYLTAYEFVLASAKLHRLAepaaaarraialvelega 139
                 56688**************999932.....124566777777744444443222222222223333333333333332222455555555666655443 PP

      AAA_22  71 erlsseellealeqalrarav....ielliiDEaqh.lr...seealeeLrslln 117
                 +  +   + + ++q +r +a+    +++l++DE  + ++   +  ++e L++l +
  KIR61624.1 140 QDRRIGTYSKGMRQRARVAAAlvhePQVLLLDEPFNgMDprqRLHMMELLHRLGD 194
                 2222222223333333333335556778888887776766533777777777766 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4    0.0001      0.15      19      96 ..      45     172 ..      34     203 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
      AAA_30  19 rvavltGpAGtGKttalkalreaweaa.g...............grviglAptgkaAkvLaeelgi..eastiakllkrlk.................. 81 
                  v+ l Gp G+GKtt+l  ++  ++ + g               +r +gl ++ +a ++  ++ ++  +++ +++l +  +                  
  KIR61624.1  45 GVTGLLGPNGAGKTTLLHMMAGFLAPSrGvvtlggrptwrnpevYRRLGLVSEREAVQTYLTAYEFvlASAKLHRLAEPAAaarraialvelegaqdrr 143
                 478899**************9999988674444444444444443333333333333332222221124444444443333555555555555555555 PP

      AAA_30  82 ..............grarlepgtllivDE 96 
                               ++a +++ ++l+ DE
  KIR61624.1 144 igtyskgmrqrarvAAALVHEPQVLLLDE 172
                 55555555566554333334446666666 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00026      0.39       3      66 ..      49     172 ..      47     222 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00026
                 EESSTTSSHHHHHHHHHHHH..THE............................................................EEEEETTTCSSSST CS
         AAA   3 lyGppGtGKTllakavakel..gve............................................................fleisgsellskyv 39 
                 l Gp G GKT+l + +a  l  + +                                                            ++e++g++ +   +
  KIR61624.1  49 LLGPNGAGKTTLLHMMAGFLapS-RgvvtlggrptwrnpevyrrlglvsereavqtyltayefvlasaklhrlaepaaaarraiaLVELEGAQDR--RI 144
                 78**************9997441.12223333334444444455555555555555555555544444444444444444443333333333333..44 PP

                 THHHHHHHHHHHHHHHTS.TSEEEEEET CS
         AAA  40 gesekkirelfkeakeka.kpsilfiDE 66 
                 g  +k +r+  + a +   +p +l++DE
  KIR61624.1 145 GTYSKGMRQRARVAAALVhEPQVLLLDE 172
                 4444444444444433335677777777 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00012      0.19      17      43 ..      37      63 ..      33      72 .. 0.85
   2 ?   -3.1   0.0       2.9   4.3e+03     162     208 ..     168     212 ..     158     220 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
                EEEEETTSSEEEEEESTTSSHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 17 tvilpfsksftaivGpNGSGKsnlldA 43
                 v++ + +++t ++GpNG+GK+ ll  
  KIR61624.1 37 DVSMSLGPGVTGLLGPNGAGKTTLLHM 63
                56788899**************99875 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.9
                 EEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 162 yllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadkl 208
                  llDe    +D +++  + ell++  +    i  s  +++le+++++
  KIR61624.1 168 LLLDEPFNGMDPRQRLHMMELLHRLGDAGRTILFS--SHILEEVEQV 212
                 56788888888888888888888887776655433..3344444444 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.4    0.0003      0.44       2      20 ..      46      64 ..      45      73 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0003
                EEEEEESTTCCHHHHHHHH CS
        cobW  2 vtvltGflGsGKTtLlnhl 20
                vt+l G+ G+GKTtLl  +
  KIR61624.1 46 VTGLLGPNGAGKTTLLHMM 64
                78999***********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2266.56
//
Query:       KIR61625.1  [L=293]
Description: hypothetical protein TK50_29155 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00015   21.1  15.8     0.0002   20.7  15.1    1.6  1  ABC2_membrane_2  ABC-2 family transporter protein
  ------ inclusion threshold ------
       0.39    9.8  11.1       0.46    9.5  11.1    1.2  1  ABC2_membrane_3  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7  15.1   2.3e-08    0.0002      81     213 ..      86     219 ..      57     287 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.3e-08
  ABC2_membrane_2  81 mavlipviaalfgadaiagEkergTlkllLskPvsRdeillgKfigglaigla.iavallatvllalaiilalgivlaledllllvvasvllll 173
                      m+ l+ ++ a+++  +++++  +g l l +s+P +R+++ l+K+++ +++  + +    ++ +l   a++ + g++  +e+ll l+ + +  +l
       KIR61625.1  86 MSWLVIFFVAVAAPELVSRDLRSGVLPLYFSRPLPRADYPLAKLLALATALWLlLGGPQFVMFLG-AAFSTGDGMSGVAEELLDLLPSLLYAGL 178
                      7778889999***************************************9333333333444443.4444444555556666666655555555 PP

  ABC2_membrane_2 174 lv.vflalglllSsvarssreaaalalglfvvlailvpivl 213
                         vf+++gll++s++ +++ aa   +++f+++  +v+ ++
       KIR61625.1 179 WAaVFASVGLLVASLTGKRAFAAGGIVAVFLMTTPIVGTLS 219
                      5479*************999999999999999976666554 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  11.1   5.1e-05      0.46     166     294 ..      85     223 ..      57     284 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 5.1e-05
  ABC2_membrane_3 166 liliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllql....llill.lafgl.....gipfg..nlglllllfll 247
                       + +++if++a+ +   + ++ +s+++ l ++ ++ ++ y l+k+l+++++ +l l    ++++l  af++     g+  +  +l+  ll+  l
       KIR61625.1  85 NMSWLVIFFVAVAAPELVSRDLRSGVLPLYFSRPLPRADYPLAKLLALATALWLLLggpqFVMFLgAAFSTgdgmsGVAEEllDLLPSLLYAGL 178
                      3444555555555777889********************************9999955543443334666688766555556788999999999 PP

  ABC2_membrane_3 248 fglayialgyllsslfknsetaqilifivilllsgffgglfpledlp 294
                       + +++++g+l+ sl+ + + a + i++v+l++  ++g l +++  +
       KIR61625.1 179 WAAVFASVGLLVASLTGKRAFAAGGIVAVFLMTTPIVGTLSVMP--S 223
                      9***************9998888888888885555555554443..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2040.93
//
Query:       KIR61626.1  [L=304]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.2e-29  101.2   0.0    8.3e-29  100.8   0.0    1.2  1  ABC_tran     ABC transporter
    2.3e-12   47.3   3.7    2.7e-05   24.1   0.0    2.7  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00026   21.5   0.1    0.00037   21.1   0.1    1.1  1  AAA_23       AAA domain
    0.00079   19.1   0.3     0.0014   18.3   0.3    1.4  1  AAA_29       P-loop containing region of AAA domain
     0.0013   17.8   0.4     0.0027   16.7   0.4    1.5  1  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
      0.009   16.3   0.0      0.041   14.2   0.0    2.0  1  AAA_22       AAA domain
  ------ inclusion threshold ------
      0.015   15.4   0.0       0.03   14.4   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
      0.022   14.5   0.1      0.032   14.0   0.1    1.4  1  AAA_30       AAA domain
      0.024   14.6   0.2      0.041   13.8   0.2    1.3  1  RsgA_GTPase  RsgA GTPase
      0.028   13.9   0.0       0.11   11.9   0.0    1.8  2  SMC_N        RecF/RecN/SMC N terminal domain
      0.036   13.8   0.0       0.05   13.3   0.0    1.1  1  AAA_15       AAA ATPase domain
      0.071   12.9   0.0       0.13   12.0   0.0    1.5  1  CLP1_P       mRNA cleavage and polyadenylation factor CLP1 P-
      0.077   13.1   0.1       0.26   11.4   0.1    2.0  1  AAA_33       AAA domain
        0.1   11.9   0.1       0.18   11.1   0.1    1.3  1  Zeta_toxin   Zeta toxin
       0.13   12.0   0.0       0.24   11.2   0.0    1.4  1  ATP_bind_1   Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0     7e-32   8.3e-29       3     137 .]      22     163 ..      20     163 .. 0.95

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 7e-32
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeieka 88 
                 ++++ +++g ++++vG nGaGKStL+k+l+gll+pt+G+ ++ g d ++ +  ++r+++g++p+++ l p+l+++e               ++e++++a
  KIR61626.1  22 DLTVAVEPG-IIGLVGANGAGKSTLIKILLGLLTPTSGRARVLGLDPTT-DSARVRARVGYMPEHDALPPDLSAAELvthlgrisglprtVARERASEA 118
                 666777777.79*******************************999999.99*********************9999***********9999999**** PP

                 HHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  89 lsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 l+++gl e + ++v      +S G+kqrv+la+al+ +p+llllDEpt+
  KIR61626.1 119 LRHVGLYEERYRPV----GGYSTGMKQRVKLAQALVHDPDLLLLDEPTN 163
                 **************....******************************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   1.7   1.7e-07    0.0002       2      24 ..      32      54 ..      31      77 .. 0.81
   2 !   24.1   0.0   2.2e-08   2.7e-05     230     297 ..     128     193 ..     112     198 .. 0.89
   3 ?   -0.8   0.0      0.88   1.1e+03     228     251 ..     224     247 ..     216     261 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.7e-07
      AAA_21  2 nvliGpNgsGKSnLLdaldllar 24
                 +l+G+Ng+GKS+L+++l +l  
  KIR61626.1 32 IGLVGANGAGKSTLIKILLGLLT 54
                68****************99964 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 2.2e-08
      AAA_21 230 qelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTH 297
                 + +p+   S G+k+  +l+ al  ++   +lll+DEp ngL+P+     l+l+ ++ ++ g+ v++ +H
  KIR61626.1 128 RYRPVGGYSTGMKQRVKLAQALVHDP---DLLLLDEPTNGLDPAGRDAMLTLVhRIGTEFGISVLVCSH 193
                 56788889****************99...9*************99999999999999999999999999 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.88
      AAA_21 228 dgqelparelSdGtkrllalltal 251
                 +  ++ a e+S+Gt +l+a l a+
  KIR61626.1 224 SATDVLAVEVSEGTEELAARLGAF 247
                 56778899********98666554 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   3.1e-07   0.00037      12      48 ..      22      58 ..      15      76 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3.1e-07
      AAA_23 12 dqeidFskgltlItGpNGaGKTTildAiklaLygetp 48
                d ++  ++g+  ++G NGaGK+T++  +   L+  ++
  KIR61626.1 22 DLTVAVEPGIIGLVGANGAGKSTLIKILLGLLTPTSG 58
                6777789******************999888886555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.3   1.2e-06    0.0014      23      50 ..      30      57 ..      18      62 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.2e-06
      AAA_29 23 gatlltGpsGsGKSTllDAiqalLvpak 50
                g++ l+G++G+GKSTl+  +  lL+p++
  KIR61626.1 30 GIIGLVGANGAGKSTLIKILLGLLTPTS 57
                46779************99999999987 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.4   2.2e-06    0.0027      31      70 ..      31      70 ..      19      73 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.2e-06
                EEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE----- CS
        MeaB 31 vvGltGvPGaGkstlvealglelrrrGkrvavlavDPssp 70
                 +Gl G  GaGkstl++ l   l+    r  vl +DP+  
  KIR61626.1 31 IIGLVGANGAGKSTLIKILLGLLTPTSGRARVLGLDPTTD 70
                69***********************************975 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.4e-05     0.041       5     126 ..      29     189 ..      26     193 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.4e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee..............erpevv.fvtlpsst.sskdllrellralglelka................e 71 
                  gi+ ++G  G+GK+tl++ ll  l+  +  ++              +r++++ + ++  +  s ++l ++l r+ gl++                  e
  KIR61626.1  29 PGIIGLVGANGAGKSTLIKILLGLLTPTSGRARvlgldpttdsarvrARVGYMpEHDALPPDlSAAELVTHLGRISGLPRTVarerasealrhvglyeE 127
                 58899*******************987776666999999988875444444445333333336888888888888888777755555544444444442 PP

      AAA_22  72 rlsseellealeqalrarav.....................ielliiDEaqh.lr...seealeeLrsllnlsrkgvqli 126
                                 +++                      + ll++DE  + l+   ++++l+ ++++    ++g++++
  KIR61626.1 128 ----------------RYRPvggystgmkqrvklaqalvhdPDLLLLDEPTNgLDpagRDAMLTLVHRIGT--EFGISVL 189
                 ................3222233333444444444446667778888888888876644777777777766..6666665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.5e-05      0.03       2      26 ..      32      62 ..      31      84 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.5e-05
                EEEEESTTSSHHHHHHHHHT.....S.TEEE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg.....e.kaiv 26
                +++vG   +GKStLi+ l+g     + +a+v
  KIR61626.1 32 IGLVGANGAGKSTLIKILLGlltptSgRARV 62
                89****************9855444235555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   2.7e-05     0.032      20      61 ..      31      74 ..      18     181 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
      AAA_30 20 vavltGpAGtGKttalkalreaweaa.g.grviglAptgkaAkv 61
                +  l+G+ G+GK+t++k l  +++   g  rv+gl pt   A+v
  KIR61626.1 31 IIGLVGANGAGKSTLIKILLGLLTPTsGrARVLGLDPTTDSARV 74
                67799**************999988866689*******999876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   3.4e-05     0.041      89     121 ..      19      51 ..       8      66 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.4e-05
                  THHHHHHHCTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  89 gleelkellkdktsvlvGqSGvGKStLinallp 121
                  +l++l+ +++  ++ lvG  G+GKStLi+ ll+
   KIR61626.1  19 ALADLTVAVEPGIIGLVGANGAGKSTLIKILLG 51 
                  567788888999999**************9987 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.2e-05      0.11      19      45 ..      24      50 ..      17      63 .. 0.82
   2 ?   -1.0   0.0       0.8   9.6e+02     160     197 ..     154     193 ..     133     209 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.2e-05
                EEETTSSEEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 19 ilpfsksftaivGpNGSGKsnlldAil 45
                ++ +++++  +vG+NG+GKs l+  +l
  KIR61626.1 24 TVAVEPGIIGLVGANGAGKSTLIKILL 50
                67789999*************998764 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.8
                 SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
       SMC_N 160 plyllDeidaaLDeknvkkvaellkekskn..aQfivisl 197
                  l llDe    LD + + ++ +l+++  ++    ++v s+
  KIR61626.1 154 DLLLLDEPTNGLDPAGRDAMLTLVHRIGTEfgISVLVCSH 193
                 57899999999**999999999999877663345555555 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.2e-05      0.05      16      48 ..      22      54 ..      19      73 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.2e-05
      AAA_15 16 dveidlseeltvliGkNnsGKSsilealdlFln 48
                d ++ +++ +  l+G+N++GKS+++++l  +l+
  KIR61626.1 22 DLTVAVEPGIIGLVGANGAGKSTLIKILLGLLT 54
                566667777888***************987766 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011      0.13       1      47 [.      36      82 ..      36     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
      CLP1_P  1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvGqseispPgtislal 47
                G++ +GKSTl+++Ll  ++  + +  ++ lD+   +  + + ++ ++
  KIR61626.1 36 GANGAGKSTLIKILLGLLTPTSGRARVLGLDPTTDSARVRARVGYMP 82
                7899******************9*99*****9888777766666655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00022      0.26       4      31 ..      34      66 ..      31     195 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00022
      AAA_33  4 lvGlpGsGKstlaerllkklg.....avllssd 31
                lvG++G+GKstl++ ll  l+     a +l  d
  KIR61626.1 34 LVGANGAGKSTLIKILLGLLTptsgrARVLGLD 66
                89************9987666555655555544 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00015      0.18      15      41 ..      28      54 ..      19      69 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
  Zeta_toxin 15 rPklillgGqpGAGKselaellkdele 41
                +P +i l+G+ GAGKs+l++ l   l+
  KIR61626.1 28 EPGIIGLVGANGAGKSTLIKILLGLLT 54
                688999**************9987776 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0002      0.24       2      39 ..      35      72 ..      34      80 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
  ATP_bind_1  2 vGpaGsGKttfvgalseilelrgrsvavvNLDPAaeel 39
                vG  G+GK+t+++ l  +l+ +  + +v+ LDP  ++ 
  KIR61626.1 35 VGANGAGKSTLIKILLGLLTPTSGRARVLGLDPTTDSA 72
                899**************9999999*********98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2023.60
//
Query:       KIR61627.1  [L=225]
Description: hypothetical protein TK50_29165 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1549.81
//
Query:       KIR61628.1  [L=142]
Description: hypothetical protein TK50_29170 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-31  107.9   0.0    4.5e-31  107.7   0.0    1.1  1  DUF2267   Uncharacterized conserved protein (DUF2267)


Domain annotation for each model (and alignments):
>> DUF2267  Uncharacterized conserved protein (DUF2267)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.0   2.5e-35   4.5e-31       3     122 .]      18     140 ..      16     140 .. 0.93

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 2.5e-35
                 HHHHHHHHHHT---..HHHHHHHHHHHHHHHHTTS-HHHHHHHHTTS-HHHHHHHHTT--TTS-----SHHHHHHHHHHTS.....E.HHHHHHHHHHH CS
     DUF2267   3 efleevqerlgled..reeAeratravLrtLrdrlteeeaadlaaqLPeelrgllrdgwppvepgkrfdreeflervaeelgvdped.aeqaaraVfaa 98 
                  +l++++++ g+++  r++ + a+r+vL+ Lrdr++++e+ ++aaqLP +lrg+++dgw+p++ + +++r++fl +v++ + +d e  +e+++++V+++
  KIR61628.1  18 LILKDIEAAYGWPKeqRNQSYGALRTVLHLLRDRMPVQESVEFAAQLPVLLRGIYFDGWQPSDVPIKLNRDDFLYEVRQGFPYDVEGgPERVVQVVLDT 116
                 5799********65559********************************************996678**************8777779*********** PP

                 HHHHS-HHHHHHHHHTS-HHHHTT CS
     DUF2267  99 lkealsegeiedvaaqLPkdlrel 122
                 l++++++ge++dv++ +P+dl++l
  KIR61628.1 117 LRRHVTQGEWDDVRSTMPRDLAQL 140
                 *********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 988.96
//
Query:       KIR61629.1  [L=495]
Description: endo-1,4-beta-xylanase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.6e-115  384.9   0.0   3.1e-115  384.7   0.0    1.1  1  Glyco_hydro_10  Glycosyl hydrolase family 10
    5.8e-33  113.2   7.7    1.5e-32  111.9   7.7    1.7  1  CBM_2           Cellulose binding domain
  ------ inclusion threshold ------
       0.15   11.9   0.1       0.34   10.7   0.1    1.5  1  GYF_2           GYF domain 2


Domain annotation for each model (and alignments):
>> Glyco_hydro_10  Glycosyl hydrolase family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  384.7   0.0  5.1e-119  3.1e-115       1     315 [.      43     351 ..      43     352 .. 0.98

  Alignments for each domain:
  == domain 1  score: 384.7 bits;  conditional E-value: 5.1e-119
                     .HHHHHHHTT.EEEEEESCHGHHCTTHHHHHHHHH-SEEEESSTTSHHHHCSBTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESSS--HHHHTSC CS
  Glyco_hydro_10   1 slkelakakf.kvgtavsaselegeskekellkkefnsltaeNemKwealepsegnftfekadklvdfakennmkvrGHtLvWhsqlPdwvkken 94 
                     sl++la+ak+  +g+a+++++l+++  +k+++++efn ++aeN+mKwe +ep++++f+f ++d++v++a   n+kv GHtLvWh+q+P w ++  
      KIR61629.1  43 SLRSLADAKGrDIGFALDPNRLSES-PYKQIADAEFNLVVAENAMKWEVTEPNRNQFSFGQGDAVVNYAVGSNKKVYGHTLVWHNQMPGWTSNL- 135
                     6899999***9***********998.*****************************************************************996. PP

                     CCHHHHHHHHHHHHHHHHHHHHTTTTESEEEEEES-B-TTS.CSBE-SHHHHHHTTHHHHHHHHHHHHH-TTSEEEEEESSTTSTSHHHHHHHHH CS
  Glyco_hydro_10  95 gskaeeallkrlenhiktvverykgkiyawDVVNEavddng.gslresvwyqilGedyiekAFeaAreadpdakLyyNDYnieeanakrkavvel 188
                      s ++  ll++++nhi+ v+++ykgk+ awDVVNEa++d g g+ r+s+ +q +G+++ie+AF+aAr+adpdakL++NDY+++  nak++a+++l
      KIR61629.1 136 -SGSD--LLAAMKNHIAGVAGHYKGKVFAWDVVNEAFADGGsGGRRDSILQQRIGNSWIEEAFRAARAADPDAKLCINDYSTDGINAKSTAIYNL 227
                     .6678..*********************************99999************************************************** PP

                     HHHHHHTT----EEEE--EEETTSCHHHHHHHHHHHHHTTTSEEEEEEEEEECETTSSHHHHHHHHHHHHHHHHHHHHHCTTTEEEEEESSSBGG CS
  Glyco_hydro_10 189 vkelkekgvpidgvGiQsHlsvdspsiseieaalkklaalglevaitELDirvkkssseeealeaqakrykelvkallevkekitgvtvWgvtDk 283
                     vk++k++gvpid+vG+Q+Hl+++++ + +++a+l+++++lg++v +tELDir++++  ++ +l++qa++yk++++++l+v+ +++gvtvWg+tDk
      KIR61629.1 228 VKDFKSRGVPIDCVGFQAHLIIGQV-PGDMQANLQRFTDLGVDVRVTELDIRMSTPA-NSSKLATQAADYKKVMNICLAVA-RCQGVTVWGITDK 319
                     ************************9.9**************************8877.5999*******************.************* PP

                     GSTTHHHSTTEC--SSB-TTS-B-HHHHHHHH CS
  Glyco_hydro_10 284 ysWlsglkkkeeapllfdsnyqpkpayeavvd 315
                     ysW++g++++e+a+l++d+ny+pkpay+av++
      KIR61629.1 320 YSWIPGTFPGEGAALIWDENYAPKPAYQAVAE 351
                     ******************************97 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   7.7   2.4e-36   1.5e-32       1     101 []     393     492 ..     393     492 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 2.4e-36
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTE CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGa 99 
                 +++ty+  ++W++Gfta+++++N+g  ++n W+  + ++agq+vt++WnatvsqsG++v a+n+s+Ng +a Gg++sfGfqg++tgsn++ptsft nG+
  KIR61629.1 393 CTVTYV-PNSWGNGFTAEIRIRNDGPDPVNAWSFGFYFTAGQQVTNAWNATVSQSGTQVLARNASYNGAVAVGGTVSFGFQGTHTGSNPSPTSFTFNGK 490
                 677875.569***************************************************************************************** PP

                 E- CS
       CBM_2 100 aC 101
                 +C
  KIR61629.1 491 VC 492
                 *9 PP

>> GYF_2  GYF domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   5.7e-05      0.34      25      42 ..     115     132 ..     113     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.7e-05
       GYF_2  25 geitpdtlVWreGmddWk 42 
                 +++  +tlVW++ m++W+
  KIR61629.1 115 KKVYGHTLVWHNQMPGWT 132
                 577889***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3397.40
//
Query:       KIR61630.1  [L=101]
Description: hypothetical protein TK50_29185 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        98  (0.005466); expected 358.6 (0.02)
Passed bias filter:                       24  (0.00133861); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 792.26
//
Query:       KIR61631.1  [L=424]
Description: cupin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-39  134.5   0.0    7.4e-39  134.1   0.0    1.1  1  Cupin_4   Cupin superfamily protein
      1e-12   48.3   0.1    2.8e-11   43.6   0.1    2.1  1  Cupin_8   Cupin-like domain
  ------ inclusion threshold ------
      0.039   13.6   0.0      0.066   12.8   0.0    1.3  1  Cupin_1   Cupin


Domain annotation for each model (and alignments):
>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.1   0.0   1.2e-42   7.4e-39       3     273 ..      33     313 ..      31     331 .. 0.80

  Alignments for each domain:
  == domain 1  score: 134.1 bits;  conditional E-value: 1.2e-42
                 HHHHHTTTTS-EEE--S-C....CCCCCHHHHHHHHCCHHCHHCC...C.EEC..TCCEEEEECCCCEEEE-SSB-SCCCHHHHHHCCHCC.CTTEEEE CS
     Cupin_4   3 eFlreyWqkkpllirralp....afagllspddLaeLaeeeevea...rlikg..erdkaewkvsrgpleerrlrklpakdwtlLvqgvslwkkavaqL 92 
                 +F + +W + pll r a       f++ll p+d +eL+ ++ +     r+ k      +a+w+ + g  +e   + l ++  +l+ +g++l+ + + + 
  KIR61631.1  33 KFAAAHWGRAPLLSRAAELpnadGFTDLLGPADADELLSRRGLRTpflRIAKDgqLVPAARWTGGGGAGAEIGDQVLDERVLELYASGATLVLQGLHRT 131
                 79999*******998764336668*******************99998777654456889**********9999999**************88888888 PP

                 C-HHHC-HH.HHHHHHHHHHS-EEEEEEEE-TTBBSS-SEE-SSEEEEEEEEC-EEEEEE-.....SCCCTTSSSEE--TTCCG--S-SEEEEE-TT-E CS
     Cupin_4  93 lqpfrfepe.wrlddvmesfslvgsnvYatpggsqgvgpHyDdyDVfllQleGrkrWrvyk.....ptvpelelkseeplkildefepvedfvLepGDl 185
                 + +   ++    l  ++ +    ++n+Y+tp+gsqg++ HyD +DVf+lQ++Grk+Wr+       p++++    + +++++ ++     d+vLepGD 
  KIR61631.1 132 WPAL--IDFaRDLGTALAQP--LQVNAYLTPAGSQGFATHYDTHDVFVLQVDGRKHWRIHPpvlpdPLERQPWGGRADEVSATAQGPAALDVVLEPGDA 226
                 8776..45523355555555..9*************************************865553333333333455566666667888********* PP

                 EEE-TT-EEEEEBBT.-CCEEEEEECCEEHCCHHHCHHHHHHHHHHHHHHHCTSCHH..CTCGTTTGGGTTS-HHHHHHHHHHHH.HHHHHH CS
     Cupin_4 186 LYlPrgviHqgvaed.esltlSvglraptaaellesvldllldklpeiderlrdall..ravqargeidsdsidalaaqlsellr.dpalle 273
                 LYlPrg+ H+++a++  sl+l+vg+ra t + ++e++l l++      d+rlr++l+  ++v+++++i+ + +++++a  + llr dpa ++
  KIR61631.1 227 LYLPRGWLHSAQAQEtSSLHLTVGIRALTRYAIVEELLALAAA-----DARLRAGLPfgTDVADPDAIEPELTETVEALRDWLLRaDPAAVA 313
                 ********************************99766666655.....45666655422788999999877777777777766665666665 PP

>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.1   4.7e-15   2.8e-11     128     244 ..     147     249 ..     121     251 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 4.7e-15
     Cupin_8 128 kkpeavnlWlGnsasv.sslHkDhyeNlycvvrGrKkftLfpPsdapflyeaslsptedgtvvssvdveepdlekfprlkdakkalevtlnaGevLylP 225
                  +p +vn +l +++s   ++H+D ++ +  +v GrK++++ pP   + l  ++           +    + d+ +         al+v l++G++LylP
  KIR61631.1 147 AQPLQVNAYLTPAGSQgFATHYDTHDVFVLQVDGRKHWRIHPPVLPDPLERQP-----------W--GGRADEVSATAQGP--AALDVVLEPGDALYLP 230
                 34889*******9986589*************************999999998...........2..22444333333333..69************** PP

     Cupin_8 226 alWfHeVkslaeeplhlav 244
                 ++W+H ++  + + lhl+v
  KIR61631.1 231 RGWLHSAQAQETSSLHLTV 249
                 *******998777778776 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.1e-05     0.066      72     106 ..     210     244 ..     200     255 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.1e-05
                 TTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSSS CS
     Cupin_1  72 pgngnrdfhkklreGdvfvvPaglvhfqynsgdep 106
                 +++g    + +l++Gd++++P+g+ h +++++ ++
  KIR61631.1 210 TAQGPAALDVVLEPGDALYLPRGWLHSAQAQETSS 244
                 55555666778********************8444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3164.54
//
Query:       KIR61632.1  [L=221]
Description: hypothetical protein TK50_29195 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0091   15.6   3.0      0.012   15.2   3.0    1.1  1  Filament        Intermediate filament protein
  ------ inclusion threshold ------
      0.037   13.4   0.4      0.048   13.0   0.4    1.1  1  Polysacc_synt   Polysaccharide biosynthesis protein
       0.52   10.2  13.7        1.1    9.1  13.7    1.5  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
       0.84   10.2   7.6        1.1    9.7   7.6    1.1  1  APG6_N          Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   3.0   2.7e-06     0.012     180     238 ..      22      80 ..      12      87 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.7e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 180 elaeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkq 238
                 + ++++r+ea +w++++++ +++a+++  e+lr+a++e +++r  +++  +e ++l +q
  KIR61632.1  22 DRVRTQRAEAHAWHEQQCAAAERAVAEAAEQLREAEREAADARELVERVDAEAAHLWQQ 80 
                 568899******************************************99998877665 PP

>> Polysacc_synt  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   1.1e-05     0.048      27      91 ..     152     219 ..     133     220 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
  Polysacc_synt  27 arilgpegfGlvalalaivtllviltdlGlnaalvreiakyrek...kelvslillnvllvllvlvll 91 
                    ar+lg+ ++G +a+ l+++ l v+l +  +++al ++ a+ r        v++ l++ l++++vl++l
     KIR61632.1 152 ARVLGARNGGDLAVGLPVLALVVTLLGPLVGLALAKRLADRRHAvlsPRPVTVVLVAGLVTTGVLLVL 219
                    9***************************************9976666666666666666666666655 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  13.7   0.00024       1.1      39     116 ..      11      89 ..       4     105 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00024
                     HHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHH..HHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHH CS
  Apolipoprotein  39 rarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelre..rlaadaeelqeqlavyaeelrerlerhvealk 116
                      a++ + l e+++r+ ++r+e+++  +q+  +  + +a+++e+lre  r aada+el e++++ a+ l ++l+++++a  
      KIR61632.1  11 AAQV-RRLAELTDRVRTQRAEAHAWHEQQCAAAERAVAEAAEQLREaeREAADARELVERVDAEAAHLWQQLRARLGAGA 89 
                     5566.789999999999999999999999999999999999999998888889999999999999988888877766654 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   7.6   0.00026       1.1      32      98 ..      17      81 ..       6      86 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00026
      APG6_N 32 lkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeee 98
                l++l+++ +++    e ++  e++ ++ e++ +e+ e+L+e+e+e ++ ++ ++   +e+++l ++ 
  KIR61632.1 17 LAELTDRVRTQ--RAEAHAWHEQQCAAAERAVAEAAEQLREAEREAADARELVERVDAEAAHLWQQL 81
                33444443333..367777888889999999999999999999999999999999999999887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                      720  (0.0401584); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 1623.02
//
Query:       KIR61633.1  [L=894]
Description: cell division protein FtsK [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-19   70.5   0.0    7.1e-17   61.6   0.0    2.8  2  FtsK_SpoIIIE  FtsK/SpoIIIE family
    0.00024   21.4   0.0    0.00094   19.5   0.0    2.0  1  AAA_22        AAA domain
     0.0027   18.1   0.2     0.0027   18.1   0.2    3.5  3  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
       0.01   15.8   0.0       0.02   14.9   0.0    1.5  1  TraG-D_C      TraM recognition site of TraD and TraG
       0.19   11.5   0.0       0.37   10.5   0.0    1.4  1  AAA_11        AAA domain


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0024       8.5      40     183 ..     137     279 ..     118     295 .. 0.77
   2 !   61.6   0.0     2e-20   7.1e-17      11     204 ..     351     565 ..     346     594 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0024
                   .SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS..SCGGGTT-TTBSS.S-B-SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHH CS
  FtsK_SpoIIIE  40 shllvaGatgsGKStalntLilSlatthtPeeVqliliDykgv..elsalediphllsvavatdperalraleeLvkemeeryalfreagvrsiaay 134
                   +h+ + G    G   ++ +L+l  + +++P  V+l+  D+  +   l+ +  +   +      +p    r+l+ Lv+++++  +   +   rs++  
    KIR61633.1 137 GHVHLSGDGADGGAAVVPALLLRSLGRADPGAVRLFGYDPEHLggGLAGFAPLGTAGL-LTFVGPGGLGRLLDDLVEQIRRINETVLAGEYRSLREL 232
                   678888888888888999999999999*************965334444544444444.567799999***************99999999999996 PP

                   HHHHHHHHHTT---B-TT-.......................-------- CS
  FtsK_SpoIIIE 135 dgeiaedpldifgdvflvlDnyddlaaene.ritsLsnqgpsygvhvlvt 183
                    + +++ p+  +  v l     d+l   +  +   ++  g + gvh++v 
    KIR61633.1 233 AAATGRRPEPWRVAVLLGG---DELSRHERgQLDRVVRTGAACGVHLVVR 279
                   6666666666554555554...4454444458888899999999999875 PP

  == domain 2  score: 61.6 bits;  conditional E-value: 2e-20
                   HHT---TTEEEEEEET.TS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS.SCGGGTT.......-TTBSS... CS
  FtsK_SpoIIIE  11 frtessqlpvalgkei.sgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgv.elsaled.......iphlls..v 96 
                   +r++ss++  a   e+  g+p+ l+l   ++h l+ G +g+GK++ + + i +la++++P e++++l+D+k++  ++ + +       +ph+     
    KIR61633.1 351 WREDSSTGLTAPIGEGpHGRPVLLNLGDYPPHALIGGPSGTGKTNLIFAWIGALASRYSPAELEFYLLDFKEGvSFARFAQgrrdpswLPHMRLvgI 447
                   555555544444444559*******************************************************9**998654555555888655558 PP

                   S-B-SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHH.....HHHHHHHHHHTT---B-TT-..............................----- CS
  FtsK_SpoIIIE  97 avatdperalraleeLvkemeeryalfreagvrsiaa.....ydgeiaedpldifgdvflvlDnyddlaaene........ritsLsnqgpsygvhv 180
                   +v td e  l++l+ L +e+++r+   +++ v ++a        g  ++  ++ ++++ l+  +                     L+ +g s g+h+
    KIR61633.1 448 NVNTDREFGLALLRFLAEELRRRADAAKKHEVTKLAElravdPTGHWPRIVAVVDEFQALLA-GR-------DvvareaadLLEDLARRGRSQGIHL 536
                   ********************************999994444444555555555555555554.33.......334444469999************9 PP

                   ------....B--.---EEEEEEC-HHHH CS
  FtsK_SpoIIIE 181 lvtagr....ele.krpslvvivderieL 204
                   +++++     e+   rp+lv++++ ri+L
    KIR61633.1 537 VLASQDvrgiEALwGRPALVAQFTLRIAL 565
                   9876641111333579***********98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.6e-07   0.00094       7     128 ..     382     539 ..     378     545 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.6e-07
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee...........................erpevvfvtlpsst.sskdllrellralglelkaerlssee 77 
                 + ++ G+sGtGKT l+      l  +++++e                           ++ ++v ++++ +      llr l+++l ++++a  ++++e
  KIR61633.1 382 HALIGGPSGTGKTNLIFAWIGALASRYSPAElefylldfkegvsfarfaqgrrdpswlPHMRLVGINVNTDReFGLALLRFLAEELRRRADA--AKKHE 478
                 67899***********9999999999999999********9999999999996666666666666666655533444556666666666666..55555 PP

      AAA_22  78 llealeqalrarav.......ielliiDEaqhlr..s.......eealeeLrsllnlsrkgvqliLv 128
                 + ++ e  +    v       + + ++DE+q l   +       +++le+L ++    ++g++l+L+
  KIR61633.1 479 VTKLAELRA----VdptghwpRIVAVVDEFQALLagRdvvareaADLLEDLARRGR--SQGIHLVLA 539
                 553333332....2333469999*********766834556677888888888888..******997 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   1.9      0.18   6.4e+02      80     135 ..      23      89 ..       4     105 .. 0.60
   2 !   18.1   0.2   7.4e-07    0.0027      24     168 ..     380     537 ..     374     539 .. 0.68
   3 ?   -0.9   0.1      0.51   1.8e+03      73     128 ..     731     808 ..     698     818 .. 0.59

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.18
      AAA_16  80 ellrqlldeaesaeleawrekleealaavpelagaea............srllellkrllallsrder 135
                 +  r   ++ae a++++  ++ + a+aavpe  ga++             r++el +r+++ ++r e 
  KIR61633.1  23 TRHRLAVADAELAAARDRLARVQHAAAAVPEKVGAQRdrrlaeidarhtARIAELARRAVDAARR-EA 89 
                 44444444444444444444444444555555555555555555555558888888888888877.54 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 7.4e-07
      AAA_16  24 pelvllsGesGvGKsslvrellralekdg.giflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala....avpelagaeas 117
                 p+  l+ G+sG+GK+ l+ ++  al  ++    l+    +++++++++ +aq     + l  +       +++ +re+ ++ l+    + +  a+a+++
  KIR61633.1 380 PPHALIGGPSGTGKTNLIFAWIGALASRYsPAELEFYLLDFKEGVSFARFAQGRRDPSWLPHMRLVGI--NVNTDREFGLALLRflaeELRRRADAAKK 476
                 6899**************88887777775333388888888888888777777755555555555522..46666666666666444434444444446 PP

      AAA_16 118 rllellkrllallsrderp.lvlvlDdlq.......wadeaslqllaaLlrlles.k.pll 168
                 +   +l++l a  ++++ p +v v+D++q        +  + ++ll+ L+r++ s + +l+
  KIR61633.1 477 HEVTKLAELRAVDPTGHWPrIVAVVDEFQallagrdVVAREAADLLEDLARRGRSqGiHLV 537
                 66666666665555556677*********7776666555589999****999887455554 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.51
      AAA_16  73 aqalareellrqlldeaesaeleawrekleeala.................avpelagaea.....srllellkrll.a 128
                 a+ +ar el+++l+d+a+  + e  +e   e++a                 av+++ag +a     +  le+l+r+l +
  KIR61633.1 731 ADPAAR-ELYADLADDAAWYDDETVPELMAETAAaldrpgtpatphylllyAVDAAAGRLAarvggRTGLEHLRRILhD 808
                 444534.777777777666666666665555555666666666777777776666666666666666666666666644 PP

>> TraG-D_C  TraM recognition site of TraD and TraG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   5.5e-06      0.02      17      48 ..     521     552 ..     496     566 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.5e-06
    TraG-D_C  17 dleellstgrsrgislvlilQsiaqleelYgk 48 
                  le+l   grs+gi+lvl+ Q+++ +e+l+g+
  KIR61633.1 521 LLEDLARRGRSQGIHLVLASQDVRGIEALWGR 552
                 4899999***********************96 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0001      0.37      20      44 ..     383     407 ..     374     435 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0001
      AAA_11  20 tliqGPPGtgKTktivellsqllsr 44 
                 +li GP GtgKT  i +++ +l+sr
  KIR61633.1 383 ALIGGPSGTGKTNLIFAWIGALASR 407
                 79*****************999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 6089.06
//
Query:       KIR61634.1  [L=86]
Description: hypothetical protein TK50_29210 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.004   17.3   5.9      0.005   17.0   5.9    1.1  1  WXG100          Proteins of 100 residues with WXG
  ------ inclusion threshold ------
      0.013   15.6   1.0      0.016   15.3   1.0    1.3  1  DUF1090         Protein of unknown function (DUF1090)
       0.46   10.8   7.2        8.9    6.6   7.2    2.1  1  ABC_tran_CTD    ABC transporter C-terminal domain


Domain annotation for each model (and alignments):
>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   5.9   8.3e-07     0.005       8      77 ..      10      79 ..       6      84 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.3e-07
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  8 elrqaaarfqkqaeeledelqrlkaevdalqsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqa 77
                +++ a +++++ ++ ++++ ++l+  ++ l+++ +G+  ++ +a+++ ++qa q+l ++L+ +  a++qa
  KIR61634.1 10 AIDVALQQIGDGQTAVQAAGEKLAEAQQTLAGALEGSGHETVEAAQASLTQASQELEECLAATLVAVEQA 79
                56678899****************************************************9987777776 PP

>> DUF1090  Protein of unknown function (DUF1090)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   1.0   2.8e-06     0.016      63     110 .]      20      67 ..       4      67 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.8e-06
     DUF1090  63 erqekveekeeeVaereaeLaeakekgdkdkiakrqekLaeakeeLke 110
                 + q +v+++ e++ae ++ La a e   ++ +++ q+ L++a +eL+e
  KIR61634.1  20 DGQTAVQAAGEKLAEAQQTLAGALEGSGHETVEAAQASLTQASQELEE 67 
                 668999*****************99999******************96 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.2    0.0015       8.9      19      61 ..      27      69 ..       1      71 [. 0.83

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0015
  ABC_tran_CTD 19 aLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeely 61
                  a  e++ae ++ la +   s +e++ +++a l+++ +eLee +
    KIR61634.1 27 AAGEKLAEAQQTLAGALEGSGHETVEAAQASLTQASQELEECL 69
                  5668889999999866544778999999999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       931  (0.051927); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 585.95
//
Query:       KIR61635.1  [L=125]
Description: hypothetical protein TK50_29215 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.07   13.5   0.0      0.095   13.0   0.0    1.2  1  PIN_9     PIN like domain


Domain annotation for each model (and alignments):
>> PIN_9  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.3e-06     0.095      67     110 ..      73     117 ..      63     121 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.3e-06
       PIN_9  67 eiveaeeekaDdailel..akeldaavlvTnDreLkkrllekgipv 110
                 ++v+a  +++Dd+i+ l  a+  +   +vT DreL+ r+   g +v
  KIR61635.1  73 RVVAAP-GSGDDTIVGLvgAAPGRRRLVVTADRELRSRVGALGAEV 117
                 566666.899****998445556788999*********98877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 960.74
//
Query:       KIR61636.1  [L=851]
Description: ATPase AAA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-55  188.1   0.1    5.8e-54  182.8   0.0    2.9  2  AAA_2            AAA domain (Cdc48 subfamily)
    1.1e-35  121.7   1.7    2.8e-35  120.4   1.7    1.7  1  AAA_lid_9        AAA lid domain
      5e-25   88.4   0.0    1.6e-13   51.3   0.0    2.7  2  AAA              ATPase family associated with various cellul
      1e-23   83.2   1.2    8.6e-23   80.2   0.2    3.0  2  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    1.2e-19   70.7   0.4    2.3e-13   50.3   0.0    3.3  3  AAA_5            AAA domain (dynein-related subfamily)
    1.6e-14   53.7   7.6    2.2e-07   30.9   0.0    3.0  2  Clp_N            Clp amino terminal domain, pathogenicity isl
    6.2e-09   36.5  20.8    4.1e-05   24.0   0.1    5.9  5  AAA_16           AAA ATPase domain
    2.1e-08   34.0   0.2      3e-05   23.8   0.0    2.9  2  Sigma54_activat  Sigma-54 interaction domain
    1.9e-07   30.6   9.1    1.9e-07   30.6   9.1    2.5  1  UVR              UvrB/uvrC motif
    1.1e-06   29.0   9.8     0.0085   16.4   0.0    5.1  3  AAA_22           AAA domain
    3.9e-05   23.7   0.1       0.36   10.7   0.0    3.5  3  ATPase_2         ATPase domain predominantly from Archaea
    3.9e-05   23.7   0.0       0.48   10.5   0.0    2.6  2  AAA_14           AAA domain
    6.3e-05   22.8   0.0       0.42   10.3   0.0    2.7  2  IstB_IS21        IstB-like ATP binding protein
    8.7e-05   23.1   1.7       0.02   15.4   0.1    3.5  3  AAA_23           AAA domain
    9.1e-05   23.0   2.1      0.092   13.3   0.0    3.6  2  AAA_18           AAA domain
    0.00013   21.4   0.0       0.22   10.9   0.0    3.6  2  TniB             Bacterial TniB protein
    0.00073   19.5   0.0       0.39   10.6   0.0    2.9  2  RsgA_GTPase      RsgA GTPase
    0.00081   19.4   0.0      0.087   12.7   0.0    3.0  2  NACHT            NACHT domain
     0.0011   18.9   0.0          1    9.3   0.0    2.4  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0023   18.1   0.0       0.76   10.0   0.0    2.4  2  Roc              Ras of Complex, Roc, domain of DAPkinase
     0.0026   18.1   0.1          4    7.9   0.0    2.7  2  RNA_helicase     RNA helicase
     0.0027   17.3   0.0        1.6    8.2   0.0    2.4  2  AAA_7            P-loop containing dynein motor region
     0.0031   16.7   0.1       0.57    9.3   0.1    2.8  2  DUF815           Protein of unknown function (DUF815)
     0.0033   17.2   5.5        1.6    8.4   0.0    4.2  3  AAA_30           AAA domain
     0.0041   16.4   0.1       0.12   11.6   0.0    3.1  3  Zeta_toxin       Zeta toxin
      0.005   16.2   0.2         17    4.7   0.0    3.5  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0054   16.5   0.0       0.18   11.6   0.0    2.8  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
     0.0068   16.3   0.1        0.5   10.2   0.0    3.1  2  AAA_3            ATPase family associated with various cellul
     0.0093   15.7   0.1        7.9    6.3   0.0    3.1  2  AAA_29           P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.021   15.0   5.2        1.2    9.3   0.0    4.3  4  AAA_33           AAA domain
      0.031   14.8   0.0         14    6.2   0.0    3.3  3  ABC_tran         ABC transporter
      0.082   12.9   0.3       0.17   11.9   0.3    1.5  1  FlxA             FlxA-like protein
      0.083   12.6   0.0         13    5.4   0.0    2.3  2  AAA_24           AAA domain
      0.099   12.4   3.0        5.6    6.7   0.0    4.0  4  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
       0.16   12.0   0.0        9.5    6.2   0.0    3.0  3  ResIII           Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.2      0.47   2.4e+02       7      77 ..     231     308 ..     225     327 .. 0.51
   2 !  182.8   0.0   1.1e-56   5.8e-54       1     171 []     563     738 ..     563     738 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.47
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..........EEEEETG CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..........ivllDEi 77 
                  l+g+ gvGkt + + lae +  + + + + +  + ++   +++ lv+      ++  + ++            i++lDEi
  KIR61636.1 231 VLIGEAGVGKTAIVEGLAERIC-DGDVPQTLIGKRVVQL--DLAGLVAGTRYRGDFEERLKKVIeeirahrdelIIFLDEI 308
                 5677788888887777777654.3333333333333322..2222222222222222222222233333333448888887 PP

  == domain 2  score: 182.8 bits;  conditional E-value: 1.1e-56
                 -----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG-------- CS
       AAA_2   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessg 87 
                 rp++s+l+lgptgvGktel +alae lf ++ +++ir+d+se++e    +h+v+rl+gappgyvg+ee G            +vllDEi+K+hp     
  KIR61636.1 563 RPMGSFLFLGPTGVGKTELGRALAEALF-GEADRMIRLDMSEFQE----RHTVARLVGAPPGYVGYEEAGqlteavrrrpyaVVLLDEIEKAHP----- 651
                 699*************************.9***************....*********************************************..... PP

                 -----HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-S.........TTTTSGGG--HHHHHHTT--HHHHTT--EE CS
       AAA_2  88 advSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrsk.........eeeeekkkeeveeelkkglipEllgRlpei 171
                       +V+++LLq+l++g+ltd+qgr+v++kn+++Imt+++gs+ i  ++r           e+e+++ +++++++l++ ++pE+l+R++e+
  KIR61636.1 652 ------DVFNILLQVLDDGRLTDSQGRTVNFKNTVLIMTSNLGSELITGAQRAVgfgagepgtERESDELRDRLMRRLQENFRPEFLNRIDEV 738
                 ......******************************************9888779*******99999***********************985 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   1.7   5.5e-38   2.8e-35       1     102 [.     372     473 ..     372     475 .. 0.97

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 5.5e-38
   AAA_lid_9   1 seeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekelaklekekealekeeekekaer 99 
                 ++e+t++iLrgl+++ye+hH+v+++deal+aa++lS+rY++dr+lPdkAIDl+D+a+arvrl++++  +++++le++l++++++ke+++++e++e+a+ 
  KIR61636.1 372 TVEDTVAILRGLRDRYEAHHQVRFTDEALVAAAELSDRYVTDRYLPDKAIDLIDQAGARVRLRNRTPASDVRELEQQLDEVRRDKEQAVADEQYERASA 470
                 589*******************************************************************************************99998 PP

   AAA_lid_9 100 lke 102
                 l++
  KIR61636.1 471 LRD 473
                 875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0     3e-16   1.6e-13       2     125 ..     231     364 ..     230     369 .. 0.85
   2 !   34.3   0.0   5.3e-11   2.7e-08       2     115 ..     569     691 ..     568     700 .. 0.82

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 3e-16
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 +l+G  G+GKT++++ +a+ +          g ++++++++ l+    y g+ e++++++++e++++++  i+f+DEi+ l+++  g+ se ++++ n 
  KIR61636.1 231 VLIGEAGVGKTAIVEGLAERIcdgdvpqtliGKRVVQLDLAGLVagTRYRGDFEERLKKVIEEIRAHRDELIIFLDEIHTLVGAG-GAGSEGGMDASNM 328
                 599*****************65555555555899**********6445******************9966***************.999********** PP

                 HHHHHHHTTTSSSTEEEEEEESS...GGGSTHHHHS.TTSS CS
         AAA  89 Llteldgvkkkeskvivigatnr...pdkldpallr.gRfd 125
                 L ++l + +       vigat+     +++++   + +Rf+
  KIR61636.1 329 LKPALARGEL-----RVIGATTLdehRRSIEKDAALaRRFQ 364
                 *****99987.....7*****98666666666555556776 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 5.3e-11
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS............STT.HHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvg.esekkirelfkeakekakp.silfiDEidalaksrsgseseeee 83 
                 l+ Gp G+GKT l +a+a+ l     +++++++se+ +             yvg e + ++ e +++      p  ++++DEi++ +++          
  KIR61636.1 569 LFLGPTGVGKTELGRALAEALfgeADRMIRLDMSEFQERhtvarlvgappgYVGyEEAGQLTEAVRR---R--PyAVVLLDEIEKAHPDV--------- 653
                 899*****************9654488**********778****99999998872444555555544...2..558**********9999......... PP

                 HHHHHHHHHHHHTTTS........SSTEEEEEEESSGGGS CS
         AAA  84 rvvnqLlteldgvkkk........eskvivigatnrpdkl 115
                    n Ll++ld+ +           +++++i+++n  ++l
  KIR61636.1 654 --FNILLQVLDDGRLTdsqgrtvnFKNTVLIMTSNLGSEL 691
                 ..**********9999999999995559999999984443 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       2.3   1.2e+03      27      49 ..     110     133 ..     109     134 .. 0.88
   2 !   80.2   0.2   1.7e-25   8.6e-23       1      81 []     744     824 ..     744     824 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 2.3
                    EEEEHHHHHHHHHHH.TSBTTTBT CS
  ClpB_D2-small  27 elevtdealdalaek.gydpeyGA 49 
                    +l++t++a++al+++   ++++GA
     KIR61636.1 110 NLSLTPAAKRALLDAhQLSRAMGA 133
                    5899********998469999998 PP

  == domain 2  score: 80.2 bits;  conditional E-value: 1.7e-25
                    SCHHHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSSTTSEEEE CS
  ClpB_D2-small   1 LtkeelkkIvdlalkklekrlkergvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegdtvrv 81 
                    L++++l++I +l l++ ++rl+++++++ +t + +d+lae+gy+pe+GARpLrr+iqre+ ++l++++l+ ++++g++v+v
     KIR61636.1 744 LEQQQLRQITELLLEETRRRLHAQDIDVAFTVAGIDWLAEHGYQPEFGARPLRRVIQREVDNRLSRMLLESAVSPGQRVTV 824
                    7899**************************************************************************987 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     1e-05    0.0052       3      76 ..     231     310 ..     229     314 .. 0.70
   2 ?   -1.9   0.0       6.2   3.2e+03     113     138 .]     335     363 ..     321     363 .. 0.68
   3 !   50.3   0.0   4.4e-16   2.3e-13       2     123 ..     568     688 ..     567     723 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1e-05
                 EEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B--...........--------...G-SEEEEESGGG CS
       AAA_5   3 lLvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrreik..ngttslvdsplvraar...egeilvlDEver 76 
                 +L+G+ G+gK+ ++e la+++  ++  ++ ++ ++  + dl g +  +   g+ + + +++ +++r      i++lDE+++
  KIR61636.1 231 VLIGEAGVGKTAIVEGLAERIcdGDVPQT-LIGKRVVQLDLAGLVAGTryRGDFEERLKKVIEEIRahrDELIIFLDEIHT 310
                 79*******************95555555.555555555555554433445555555555555555555999******985 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 6.2
                 ...-EEEEEESS--..-TT-TTHHHHTT- CS
       AAA_5 113 r..frviatanpld.rslnelspalrsRf 138
                 r  +rvi+++   + r++ e ++al +Rf
  KIR61636.1 335 RgeLRVIGATTLDEhRRSIEKDAALARRF 363
                 14578887665555577777799999999 PP

  == domain 3  score: 50.3 bits;  conditional E-value: 4.4e-16
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--...........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreik..ngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerr 93 
                 +l +Gp+G+gK+el + la+al    +++    +++  +e++ + r+  +  +     + + l++a+r    ++++lDE+e+a+++v+n+Ll++l++ r
  KIR61636.1 568 FLFLGPTGVGKTELGRALAEALfgeADRMIRLDMSE-FQERHTVARLVGAppGYVGYEEAGQLTEAVRrrPYAVVLLDEIEKAHPDVFNILLQVLDDGR 665
                 789********************8533333333333.333333333333354667777889*******98889************************** PP

                 EE..-SSSEEE---......-EEEEEESS- CS
       AAA_5  94 llleeggelvkaknddllerfrviatanpl 123
                 l  ++ g+ v++kn      + +i+t+n  
  KIR61636.1 666 LT-DSQGRTVNFKN------TVLIMTSNLG 688
                 *9.88999999999......6777777754 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.9   1.3e-08   6.9e-06       1      48 [.      50      95 ..      50      96 .. 0.95
   2 !   30.9   0.0   4.2e-10   2.2e-07       1      44 [.     124     167 ..     124     171 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.3e-08
                HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHH CS
       Clp_N  1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkai 48
                A + A +++ + ++t+HLL A l+ d  ++++l ++aG+d+dal +a+
  KIR61636.1 50 AARRAAQRHSNDLDTDHLLWAALQRD--ALRDLVRRAGADPDALVNAL 95
                6789********************99..****************9986 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 4.2e-10
                 HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHH CS
       Clp_N   1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldal 44 
                 A++l++++g +yi++EH+L+AL  +++++a r L++  + ++ l
  KIR61636.1 124 AHQLSRAMGANYIGPEHILMALPLNPESPAGRMLAAGRIQPESL 167
                 99*******************************99765555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1       2.1   1.1e+03      63     107 ..      58     103 ..      36     134 .. 0.51
   2 !   24.0   0.1   7.9e-08   4.1e-05       2      51 ..     208     254 ..     207     275 .. 0.83
   3 ?    3.9   0.1      0.12        62     117     146 ..     281     310 ..     264     341 .. 0.74
   4 ?    0.2   0.5       1.6   8.3e+02      92     131 ..     440     483 ..     378     529 .. 0.56
   5 !   15.1   3.8   4.5e-05     0.023       2      52 ..     537     608 ..     536     822 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 2.1
      AAA_16  63 lesaipysa.laqalareellrqlldeaesaeleawrekleeala......a 107
                 ++ ++  ++ l+ al +++ lr+l ++     ++a++++l  al+      +
  KIR61636.1  58 HSNDLDTDHlLWAAL-QRDALRDLVRR-----AGADPDALVNALGgrgegkP 103
                 222233345477777.44777888777.....33344444444443333453 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 7.9e-08
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd 51 
                 ++GR +e+eq  ++l+r  ++ p   +l+Ge+GvGK+++v+ l++++++ 
  KIR61636.1 208 VIGRAAEIEQAVEILSRRTKNNP---VLIGEAGVGKTAIVEGLAERICDG 254
                 78******998888887777665...899****************99976 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.12
      AAA_16 117 srllellkrllallsrderplvlvlDdlqw 146
                  ++ e lk+ ++ ++ +++ l+++lD+++ 
  KIR61636.1 281 GDFEERLKKVIEEIRAHRDELIIFLDEIHT 310
                 46778888888444444445********94 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1.6
      AAA_16  92 aeleawrekleeala....avpelagaea....srllellkrllalls 131
                 +++++  ++l+e+ +    av++          s+l++ l++l a++s
  KIR61636.1 440 SDVRELEQQLDEVRRdkeqAVADE----QyeraSALRDRLAELEAQIS 483
                 333333333333333222211111....12233444444444443333 PP

  == domain 5  score: 15.1 bits;  conditional E-value: 4.5e-05
      AAA_16   2 lvGReeeleqLlsalervrsgrp......elvllsGesGvGKsslvrellralekd...............g 52 
                 +vG ++ + ++++a++r r+g        ++ l+ G+ GvGK+ l r+l++al ++               +
  KIR61636.1 537 VVGQDDAVGAVAEAVRRSRTGLAdpnrpmGSFLFLGPTGVGKTELGRALAEALFGEadrmirldmsefqerH 608
                 7999************999997777999***********************998885544444433333330 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0093       4.8       2      53 ..     209     258 ..     208     315 .. 0.54
   2 !   23.8   0.0   5.8e-08     3e-05      24     135 ..     567     680 ..     538     697 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0093
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-E CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpf 53 
                      ig+ +++++++e +++ +k + +v + Ge G+GK+ + + + e+    + p 
       KIR61636.1 209 IGRAAEIEQAVEILSRRTK-NNPV-LIGEAGVGKTAIVEGLAERICDGDVPQ 258
                      6667777777777766543.3455.56*********9998877665554443 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 5.8e-08
                      -EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS-HHHHHHHHH CS
  Sigma54_activat  24 svlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigelplelQekLlr 115
                      s l +G +G+GK+ l ra+ ea   ++ +++++++++++e+   ++L G   G + G e++ +   ++++    +++LDei++  +++ + Ll+
       KIR61636.1 567 SFLFLGPTGVGKTELGRALAEALFGEADRMIRLDMSEFQERHTVARLVGAPPG-YVGYEEAGQltEAVRRRPYAVVLLDEIEKAHPDVFNILLQ 659
                      6799**********************************************999.67766544333566666789******************** PP

                      HHHHSEEESB.TSSSEEE--E CS
  Sigma54_activat 116 vlqegeverv.Gsskeikvdv 135
                      vl++g+++   G + + k +v
       KIR61636.1 660 VLDDGRLTDSqGRTVNFKNTV 680
                      ****98765314444444444 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   9.1   3.8e-10   1.9e-07       1      36 []     446     481 ..     446     481 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 3.8e-10
         UVR   1 kklikeLeeemeeAaenedFEkAAklRDqinalkkq 36 
                 +++++e+++++e+A+++e++E+A+ lRD++++l++q
  KIR61636.1 446 EQQLDEVRRDKEQAVADEQYERASALRDRLAELEAQ 481
                 57899****************************987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   0.00011     0.056       4     104 ..     226     312 ..     223     341 .. 0.74
   2 !   16.4   0.0   1.7e-05    0.0085       7     119 ..     567     669 ..     563     689 .. 0.81
   3 ?   -0.4   0.2       2.5   1.3e+03      72     129 ..     709     777 ..     677     784 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00011
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh 102
                 t++  v++Ge+G+GKT  ++ l+e+          +++ v  tl ++   +  l  l+  +      +r++ ee l+++ + +ra+++  ++ +DE++ 
  KIR61636.1 226 TKNNPVLIGEAGVGKTAIVEGLAERI---------CDGDVPQTLIGKRVVQLDLAGLVAGTR-----YRGDFEERLKKVIEEIRAHRDELIIFLDEIHT 310
                 778889*******************9.........788777777777755555566666666.....34666777777777777777767777899988 PP

      AAA_22 103 lr 104
                 l 
  KIR61636.1 311 LV 312
                 75 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.7e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrs 105
                 + +  G++G+GKT l r l+e l        e ++ ++ ++++       ++ ++r +g +  +      e   +l++a+r+r   +++++DE+++  +
  KIR61636.1 567 SFLFLGPTGVGKTELGRALAEALFG------EADRMIRLDMSEFQ----ERHTVARLVGAPPGY---VGYEEAGQLTEAVRRRPY-AVVLLDEIEKA-H 650
                 56778*****************954......499999**999999....467779999998888...666666788888888888.9**********.9 PP

      AAA_22 106 eealeeLrsllnl.....s 119
                 +++++ L + l++     s
  KIR61636.1 651 PDVFNILLQVLDDgrltdS 669
                 *******998886655541 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 2.5
      AAA_22  72 rlsseellealeqalrarav.ielliiDEaqhlr....s......eealeeLrsllnlsrkgvqliLvG 129
                 + +s+el+++l + l++ ++   l  iDE+  +r    +      e +lee r++l  ++ +v++ ++G
  KIR61636.1 709 ERESDELRDRLMRRLQENFRpEFLNRIDEVIIFRrleqQqlrqitELLLEETRRRLHAQDIDVAFTVAG 777
                 466677777777777777773222245555544433220221222333333344444356666666655 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0007      0.36       4      43 ..     211     250 ..     209     257 .. 0.91
   2 ?    5.8   0.0     0.022        11     101     134 ..     282     313 ..     258     321 .. 0.84
   3 ?    2.6   0.0      0.21   1.1e+02      26      45 ..     571     590 ..     561     662 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0007
    ATPase_2   4 RekelkeleeilerepneiyfiYGpegsGKtaLlkeiien 43 
                 R +e+++  eil+r +++  ++ G  g+GKta++  ++e+
  KIR61636.1 211 RAAEIEQAVEILSRRTKNNPVLIGEAGVGKTAIVEGLAER 250
                 999**************999*************9988877 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.022
    ATPase_2 101 lvfkaielllekikkkgkkiiiiiDelqklidlg 134
                 + ++ +++++e+i+  + ++ii++De+  l+  g
  KIR61636.1 282 DFEERLKKVIEEIRAHRDELIIFLDEIHTLV--G 313
                 678899*********************9998..4 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.21
    ATPase_2  26 YGpegsGKtaLlkeiienle 45 
                  Gp g+GKt L + ++e l 
  KIR61636.1 571 LGPTGVGKTELGRALAEALF 590
                 4**********999998874 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00094      0.48       6      77 ..     231     323 ..     227     364 .. 0.65
   2 !   10.3   0.0    0.0011      0.54       7      90 ..     570     664 ..     566     679 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00094
      AAA_14   6 vitGaRrvGKTtllkqlikell.......vkkesilyinldderd..kkla.dpe.kllelileklkeekktylflDEiqev...........p 77 
                 v+ G   vGKT +++ l+++            ++++ ++l       + ++ d+e +l ++i e   ++++ ++flDEi+ +            
  KIR61636.1 231 VLIGEAGVGKTAIVEGLAERICdgdvpqtLIGKRVVQLDLAGLVAgtR-YRgDFEeRLKKVIEEIRAHRDELIIFLDEIHTLvgaggagseggM 323
                 567777899999999999776698855543345555555555333532.223555355566666533358899*******98555555555555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0011
      AAA_14   7 itGaRrvGKTtllkqlikellvkkesilyinldderd......kkladpe.............kllelileklkeekktylflDEiqev.pewekalks 85 
                   G+  vGKT l + l++ l+ ++++++ +++ + ++                          +l e++++    +   +++lDEi ++ p+++++l +
  KIR61636.1 570 FLGPTGVGKTELGRALAEALFGEADRMIRLDMSEFQErhtvarL-----VgappgyvgyeeagQLTEAVRR----RPYAVVLLDEIEKAhPDVFNILLQ 659
                 57999************999999999999999987773333330.....1333333322111123333333....33456******9876899999999 PP

      AAA_14  86 lvdeg 90 
                 ++d+g
  KIR61636.1 660 VLDDG 664
                 99988 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0016      0.83      45      76 ..     225     256 ..     212     311 .. 0.71
   2 !   10.3   0.0   0.00082      0.42      50      72 ..     568     590 ..     563     615 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0016
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavragl 76 
                 ++k+n vl+G +GvGK+ +   l+ + +  ++
  KIR61636.1 225 RTKNNPVLIGEAGVGKTAIVEGLAERICDGDV 256
                 568999******************99998554 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00082
   IstB_IS21  50 ivllGpsGvGKshlaialgveav 72 
                 +++lGp+GvGK+ l  al+ +  
  KIR61636.1 568 FLFLGPTGVGKTELGRALAEALF 590
                 789***************98865 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.32   1.6e+02      23      39 ..     231     247 ..     217     250 .. 0.91
   2 ?    1.9   0.1      0.54   2.8e+02     149     192 ..     436     482 ..     377     488 .. 0.62
   3 !   15.4   0.1   3.9e-05      0.02      20      54 ..     566     600 ..     560     765 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.32
      AAA_23  23 lItGpNGaGKTTildAi 39 
                 +++G+ G GKT+i++ +
  KIR61636.1 231 VLIGEAGVGKTAIVEGL 247
                 689***********987 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.54
      AAA_23 149 kdkkerleelekeleeledekkllekl...eqekekekeleeleeel 192
                  ++ + ++ele++l+e   +k++  +    e++   +++l ele ++
  KIR61636.1 436 RTPASDVRELEQQLDEVRRDKEQAVADeqyERASALRDRLAELEAQI 482
                 44444677777777776665543333212233333444555555554 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 3.9e-05
      AAA_23  20 gltlItGpNGaGKTTildAiklaLygetprlsrks 54 
                 g +l+ Gp+G GKT + +A+  aL+ge+ r+ r +
  KIR61636.1 566 GSFLFLGPTGVGKTELGRALAEALFGEADRMIRLD 600
                 789************************99886655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.015       7.7       3      25 ..     232     258 ..     231     312 .. 0.69
   2 !   13.3   0.0   0.00018     0.092       3      26 ..     570     591 ..     569     629 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.015
      AAA_18   3 ltGtpGvGKttlakeLskrlgf.....g 25 
                 l G +GvGKt + + L++r  +      
  KIR61636.1 232 LIGEAGVGKTAIVEGLAERI-CdgdvpQ 258
                 7899**************95.5544441 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00018
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgv 26 
                   G+ GvGKt+l+++L++ l f  
  KIR61636.1 570 FLGPTGVGKTELGRALAEAL-F-G 591
                 57****************98.3.3 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00043      0.22      91     185 ..     270     369 ..     208     372 .. 0.73
   2 ?    1.2   0.0      0.41   2.1e+02      33      52 ..     563     582 ..     546     589 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00043
        TniB  91 LealgaplkararvskleqqvlrllrelkvrvLi.iDEihnllagsarkqr...eflnalksLgnelkipivlvGt.eealralrtDpqlasRFepial 184
                 L+ l a ++ r + ++  ++v++ +r+ + +++i +DEih l+ +     +    + n+lk    + ++ ++++ t +e  r +++D+ la+RF+p+ +
  KIR61636.1 270 LAGLVAGTRYRGDFEERLKKVIEEIRAHRDELIIfLDEIHTLVGAGGAGSEggmDASNMLKPALARGELRVIGATTlDEHRRSIEKDAALARRFQPVLV 368
                 777888888899999999999999999999887746****9985444433311167789998888889999998874678899************9987 PP

        TniB 185 p 185
                 p
  KIR61636.1 369 P 369
                 7 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.41
        TniB  33 krmpnlllvGdsnnGKtmiv 52 
                   m + l++G++ +GKt + 
  KIR61636.1 563 RPMGSFLFLGPTGVGKTELG 582
                 447999***********875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00077      0.39      77     121 ..     205     249 ..     188     268 .. 0.78
   2 ?    5.4   0.0     0.029        15     102     122 ..     568     588 ..     552     611 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00077
                  SEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  77 yevllvsaktkegleelkellkdktsvlvGqSGvGKStLinallp 121
                  +++++ +a + e++ e+ ++ +++  vl+G+ GvGK+++++ l++
   KIR61636.1 205 IDPVIGRAAEIEQAVEILSRRTKNNPVLIGEAGVGKTAIVEGLAE 249
                  55555566666777777777788899*************998876 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.029
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                   +++G++GvGK+ L  al++ 
   KIR61636.1 568 FLFLGPTGVGKTELGRALAEA 588
                  579*********998888764 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00017     0.087       4      32 ..     231     259 ..     230     309 .. 0.91
   2 ?    3.2   0.0      0.15        75       5      24 ..     570     589 ..     567     659 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00017
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpqg 32 
                 +l GeaG+GKT+ +++la+ + +g+ pq 
  KIR61636.1 231 VLIGEAGVGKTAIVEGLAERICDGDVPQT 259
                 689******************99999985 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.15
                 EEC-TTTCHHHHHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqklalaw 24 
                   G+ G+GKT L + la+a+
  KIR61636.1 570 FLGPTGVGKTELGRALAEAL 589
                 68**********99999887 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0     0.002         1       6      43 ..     214     251 ..     209     257 .. 0.80
   2 ?    7.0   0.0     0.011       5.7      22      43 ..     568     589 ..     540     597 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.002
                 HHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE   6 etealgkklakalgdvilLeGdLGaGKTtlvrglakal 43 
                 e+e++ + l + +++  +L G+ G+GKT++v gla+ +
  KIR61636.1 214 EIEQAVEILSRRTKNNPVLIGEAGVGKTAIVEGLAERI 251
                 566666667666677899****************9875 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.011
                 EEEEESTTSSHHHHHHHHHHHT CS
        TsaE  22 ilLeGdLGaGKTtlvrglakal 43 
                 +l+ G+ G+GKT l r+la+al
  KIR61636.1 568 FLFLGPTGVGKTELGRALAEAL 589
                 7899***************998 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0015      0.76       3      31 ..     231     259 ..     230     276 .. 0.80
   2 ?    5.5   0.0     0.036        19       3      27 ..     569     593 ..     567     611 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0015
                 EEESSTTSSHHHHHHCHCT-CCC-EEETT CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekst 31 
                 vl+G++gvGKt +++ + e+  + +  +t
  KIR61636.1 231 VLIGEAGVGKTAIVEGLAERICDGDVPQT 259
                 79************999988887665554 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.036
                 EEESSTTSSHHHHHHCHCT-CCC-E CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsek 27 
                 +++G +gvGKt l + + e  f e 
  KIR61636.1 569 LFLGPTGVGKTELGRALAEALFGEA 593
                 789**********999998877554 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.012       6.4       3      24 ..     232     253 ..     231     265 .. 0.88
   2 !    7.9   0.0    0.0079         4       2      25 ..     569     592 ..     568     613 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.012
  RNA_helicase   3 lyGpsgeGKStlakeLakallk 24 
                   l G++g+GK+ +++ La+++++
    KIR61636.1 232 LIGEAGVGKTAIVEGLAERICD 253
                   78****************9984 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0079
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkk 25 
                   ++ Gp+g+GK+ l + La+al ++
    KIR61636.1 569 LFLGPTGVGKTELGRALAEALFGE 592
                   589***************999855 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0031       1.6      32      56 ..     226     250 ..     213     261 .. 0.80
   2 ?    6.4   0.0     0.011       5.6      35      71 ..     567     603 ..     562     616 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0031
       AAA_7  32 nkkpvllvGptGtGKtviikdllkk 56 
                  k++ +l+G++G+GKt+i++ l ++
  KIR61636.1 226 TKNNPVLIGEAGVGKTAIVEGLAER 250
                 45667899***********987765 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.011
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylsltinfsa 71 
                 ++l+ GptG+GKt + + l ++l  e   ++ + +s 
  KIR61636.1 567 SFLFLGPTGVGKTELGRALAEALFGEADRMIRLDMSE 603
                 589**********999988888876666666666665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1    0.0011      0.57      46     115 ..     220     307 ..     201     310 .. 0.72
   2 ?    4.0   0.0     0.046        24      54     101 ..     566     613 ..     529     619 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0011
      DUF815  46 qfleglpannvLLwGarGtGKSslvkallneyaeeg.......Lrlievekedl...........kelpklvellrerperfilfvDD 115
                 + l+ ++ nn +L+G+ G+GK ++v  l +++++          r+++++   l           + l+k++e++r+ + ++i+f+D 
  KIR61636.1 220 EILSRRTKNNPVLIGEAGVGKTAIVEGLAERICDGDvpqtligKRVVQLDLAGLvagtryrgdfeERLKKVIEEIRAHRDELIIFLDE 307
                 556677789999*******************998777777777466666544442222222222246888888888888888888886 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.046
      DUF815  54 nnvLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvel 101
                    L+ G  G+GK  l +al +++  e  r+i ++ ++ +e  ++ +l
  KIR61636.1 566 GSFLFLGPTGVGKTELGRALAEALFGEADRMIRLDMSEFQERHTVARL 613
                 457999**************************9999988877666655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0032       1.6       9      41 ..     218     250 ..     212     271 .. 0.79
   2 ?    2.4   1.6      0.22   1.1e+02     123     158 ..     490     525 ..     379     559 .. 0.74
   3 ?    5.0   0.0     0.035        18      23     111 ..     570     660 ..     564     667 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0032
      AAA_30   9 avealltsgdrvavltGpAGtGKttalkalrea 41 
                 ave l   ++   vl G AG GKt ++++l+e 
  KIR61636.1 218 AVEILSRRTKNNPVLIGEAGVGKTAIVEGLAER 250
                 55555555555689**************99875 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.22
      AAA_30 123 GDerQlasVeaGgvlrdlveaagigtaeLtevvRqk 158
                 G   Q ++V++ ++ + + +a+gi++a+Lte  R +
  KIR61636.1 490 GSGSQVPAVGPQEIAEVVSRATGIPVAQLTEEERDR 525
                 3347**************9999********988876 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.035
      AAA_30  23 ltGpAGtGKttalkalreaweaaggrviglAptgkaAkv.Laeelgi.eastiakllkrlkgrarlepgtllivDEagmvdtkqlaallka 111
                   Gp G GKt + +al+ea+  +  r+i l  ++ + +  +a+ +g+ +++   +   +l++++r +p  +++ DE+  +  + ++ ll+ 
  KIR61636.1 570 FLGPTGVGKTELGRALAEALFGEADRMIRLDMSEFQERHtVARLVGApPGYVGYEEAGQLTEAVRRRPYAVVLLDEIEKAHPDVFNILLQV 660
                 579*************999988765555544443333222444444422222223333333444555666777777666666666666655 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.78     4e+02      15      40 ..     226     251 ..     213     258 .. 0.76
   2 !   11.6   0.0   0.00023      0.12      21      58 ..     570     608 ..     550     636 .. 0.85
   3 ?   -2.6   0.0       5.3   2.7e+03      42      64 ..     634     656 ..     624     675 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.78
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdel 40 
                 ++   +l G  G GK+++ e l++++
  KIR61636.1 226 TKNNPVLIGEAGVGKTAIVEGLAERI 251
                 4444567799*********9998876 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00023
  Zeta_toxin  21 lgGqpGAGKselaellkdele.rqgnvvrldpDdlRelh 58 
                   G +G GK+el ++l+++l  ++++++rld  +++e+h
  KIR61636.1 570 FLGPTGVGKTELGRALAEALFgEADRMIRLDMSEFQERH 608
                 45889***************99****************9 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 5.3
  Zeta_toxin  42 rqgnvvrldpDdlRelhPeyeei 64 
                 r++ + ++  D++ + hP++ +i
  KIR61636.1 634 RRRPYAVVLLDEIEKAHPDVFNI 656
                 67889999999999999997665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.11        54      12      44 ..     216     249 ..     205     268 .. 0.74
   2 ?    4.7   0.0     0.034        17      24      46 ..     567     589 ..     565     618 .. 0.76
   3 ?    4.5   0.0     0.039        20     107     158 ..     638     687 ..     591     749 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.11
  Mg_chelatase  12 kralei.aaaGgHnlllvGppGsGKtmlakrlps 44 
                   ++a+ei +   + n +l+G +G GKt + + l++
    KIR61636.1 216 EQAVEIlSRRTKNNPVLIGEAGVGKTAIVEGLAE 249
                   5566652334567789***********9988765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.034
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsll 46 
                   ++l++Gp G GKt l ++l++ l
    KIR61636.1 567 SFLFLGPTGVGKTELGRALAEAL 589
                   579************99997654 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.039
  Mg_chelatase 107 nGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNp 158
                     v++LDE+ + + +v+++L + l+dg++t s+  ++v+f   + l+++ N+
    KIR61636.1 638 YAVVLLDEIEKAHPDVFNILLQVLDDGRLTDSQG-RTVNFKN-TVLIMTSNL 687
                   4799************************987665.5677764.556666665 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.6   1.4e+03      19      46 ..     227     254 ..     215     261 .. 0.76
   2 !   11.6   0.0   0.00035      0.18      16     128 ..     562     662 ..     556     665 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.6
  DNA_pol3_delta2  19 ahayLfeGdegigkkelalnlakallce 46 
                      ++  ++ G++g+gk ++   la++++  
       KIR61636.1 227 KNNPVLIGEAGVGKTAIVEGLAERICDG 254
                      44446789***************99976 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00035
  DNA_pol3_delta2  16 grlahayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivieteekersikldqirelieelsrkpreskkkiiii 109
                      +r   ++Lf G++g+gk el  +la+al+ e ++         +  +++ + h    +++       +  ++  +l+e + r+p+     ++++
       KIR61636.1 562 NRPMGSFLFLGPTGVGKTELGRALAEALFGEADRMI-----RLDMSEFQ-ERHTVARLVGAPPG--YVGYEEAGQLTEAVRRRPY----AVVLL 643
                      6667799***********************999865.....22333333.33333344444444..6899999999999999886....58999 PP

  DNA_pol3_delta2 110 edaekmtksAaNalLktlE 128
                      +++ek ++   N+lL++l 
       KIR61636.1 644 DEIEKAHPDVFNILLQVLD 662
                      9999999999999999886 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.66   3.4e+02       4      23 ..     232     251 ..     230     294 .. 0.76
   2 !   10.2   0.0   0.00097       0.5      63     108 ..     638     684 ..     568     691 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.66
       AAA_3   4 legvPGlaktllvkalakal 23 
                 l g  G++kt +v+ la+ +
  KIR61636.1 232 LIGEAGVGKTAIVEGLAERI 251
                 56788***********9875 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00097
       AAA_3  63 anllladeinrappktqsalleameerqvt.vegethklpepflvla 108
                   ++l dei++a p +   ll+++++ ++t  +g+t +++++ l+++
  KIR61636.1 638 YAVVLLDEIEKAHPDVFNILLQVLDDGRLTdSQGRTVNFKNTVLIMT 684
                 468999**********************9934678888888777765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.028        14      22      41 ..     227     246 ..     217     250 .. 0.80
   2 ?    6.3   0.0     0.015       7.9      21      48 ..     564     591 ..     559     596 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.028
      AAA_29  22 kgatlltGpsGsGKSTllDA 41 
                 k++ +l+G+ G+GK++++  
  KIR61636.1 227 KNNPVLIGEAGVGKTAIVEG 246
                 45789***********9865 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.015
      AAA_29  21 lkgatlltGpsGsGKSTllDAiqalLvp 48 
                 + g++l+ Gp+G+GK+ l  A++  L +
  KIR61636.1 564 PMGSFLFLGPTGVGKTELGRALAEALFG 591
                 56789**********9887777766665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2         3   1.6e+03      51      97 ..      39      86 ..      13      92 .. 0.65
   2 ?    4.2   0.0     0.084        43       4      24 ..     232     252 ..     231     307 .. 0.61
   3 ?   -1.1   0.1       3.8   1.9e+03      62     110 ..     328     377 ..     325     403 .. 0.65
   4 ?    9.3   0.0    0.0022       1.2       3      38 ..     569     609 ..     568     679 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 3
      AAA_33 51 vldrlyqilnelarkalsag.rnvildatnlsrrerarflklarrlgv 97
                 + +++++l++ ar+a+++  +++ +d  ++ + +r++++ l+rr+g+
  KIR61636.1 39 MTADAREMLADAARRAAQRHsNDLDTDHLLWAALQRDALRDLVRRAGA 86
                345577778788877764441457778888888888888888888776 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.084
      AAA_33   4 lvGlpGsGKstlaerllkklg 24 
                 l+G +G+GK+  +e+l+++  
  KIR61636.1 232 LIGEAGVGKTAIVEGLAERIC 252
                 799*************98765 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 3.8
      AAA_33  62 larkalsagrnvildatnlsrrer..arflklarrlgvpvrivvvetdeet 110
                 +++ al++g   ++ at l++++r  ++  +larr+  pv++   ++ + +
  KIR61636.1 328 MLKPALARGELRVIGATTLDEHRRsiEKDAALARRFQ-PVLVPEPTVEDTV 377
                 5667888888899999999999995434445566666.7666665555554 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.0022
      AAA_33   3 llvGlpGsGKstlaerllkklg.....avllssdtlrrrlf 38 
                 l+ G+ G+GK+ l + l+++l      +++l+  ++ +r++
  KIR61636.1 569 LFLGPTGVGKTELGRALAEALFgeadrMIRLDMSEFQERHT 609
                 799****************9998888888888777666665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.19        99      15      33 ..     231     249 ..     223     267 .. 0.87
   2 ?    0.2   0.0         2     1e+03       9      80 ..     304     394 ..     297     469 .. 0.65
   3 ?    6.2   0.0     0.027        14      16      51 ..     570     606 ..     565     647 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.19
                 EEEESTTSSHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllag 33 
                 +++Ge G GK+ +++ la+
  KIR61636.1 231 VLIGEAGVGKTAIVEGLAE 249
                 79**********9987765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 2
                 ETTSEEEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH.................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.................x RF
    ABC_tran   9 kegekvaivGenGaGKStLlkllagllkp.teGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren.................e 80 
                   +e++ +vG  GaG    + +   l    + Ge+++ g+ + ++ ++s +k  +      p l pe tv+++                  
  KIR61636.1 304 FLDEIHTLVGAGGAGSEGGMDASNMLKPAlARGELRVIGATTLDEHRRSIEKDAALARRFqPVLVPEPTVEDTvailrglrdryeahhqvR 394
                 5677888888888886555555444433356777777777777767777777777776666777777777777777766666655544442 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.027
                 EEESTTSSHHHHHHHHTTSS--SEEE.EEETTCEGGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
    ABC_tran  16 ivGenGaGKStLlkllagllkpteGe.illdgkdlke 51 
                 ++G++G GK+ L ++la+ l  ++++ i+ld+ +++e
  KIR61636.1 570 FLGPTGVGKTELGRALAEALFGEADRmIRLDMSEFQE 606
                 79**************998777666524555655555 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   0.00034      0.17      26      71 ..     442     488 ..     439     497 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00034
        FlxA  26 iknlqkqLkelses.deltkeekkkqqqliqaQIqqlqaQIaqlqqq 71 
                 + +l++qL+e+  + ++  ++e+ +++  +   +  l+aQI + + +
  KIR61636.1 442 VRELEQQLDEVRRDkEQAVADEQYERASALRDRLAELEAQISRAKGD 488
                 5789**********6667788888*****************998765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.041        21       3      22 ..     228     247 ..     226     312 .. 0.78
   2 ?    5.4   0.0     0.026        13       6      82 ..     569     654 ..     567     672 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.041
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                 ++ +++G++g+GKT ++  l
  KIR61636.1 228 NNPVLIGEAGVGKTAIVEGL 247
                 56689*********998877 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.026
      AAA_24   6 liyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel...............aaeladyktlviDtideleelcl 82 
                 l  Gp g+GKT l + l  ++lf   ++ + +ld  +f++ ++++ ++                     a   ++y ++ +D i+++   ++
  KIR61636.1 569 LFLGPTGVGKTELGRAL-AEALFGEADR-MIRLDMSEFQERHTVARLVG----AppgyvgyeeagqlteAVRRRPYAVVLLDEIEKAHPDVF 654
                 668**************.9999999999.77888888886654444433....033336666666767667778888888888888876665 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.85   4.4e+02      36      56 ..     230     250 ..     213     294 .. 0.80
   2 ?    0.3   0.2      0.99   5.1e+02      84      96 ..     299     311 ..     284     314 .. 0.75
   3 ?    6.7   0.0     0.011       5.6      30      57 ..     562     589 ..     530     600 .. 0.75
   4 ?    0.3   0.0      0.99   5.1e+02      84     113 ..     637     666 ..     623     682 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.85
      RuvB_N  36 vllyGpPGlGkttlakiiake 56 
                  +l+G  G+Gkt++ + +a+ 
  KIR61636.1 230 PVLIGEAGVGKTAIVEGLAER 250
                 4688*********99888765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.99
      RuvB_N  84 ekdvlfideihrl 96 
                 ++ ++f+deih l
  KIR61636.1 299 DELIIFLDEIHTL 311
                 45699******88 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.011
      RuvB_N  30 eealdhvllyGpPGlGkttlakiiakel 57 
                 ++++   l+ Gp G+Gkt l + +a+ l
  KIR61636.1 562 NRPMGSFLFLGPTGVGKTELGRALAEAL 589
                 5677889**************9999876 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.99
      RuvB_N  84 ekdvlfideihrlsraveevlysamedfrl 113
                 +  v+++dei + ++ v ++l + ++d rl
  KIR61636.1 637 PYAVVLLDEIEKAHPDVFNILLQVLDDGRL 666
                 567999*******************99876 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.68   3.5e+02      19      47 ..     222     250 ..     204     260 .. 0.74
   2 ?   -0.5   0.0       2.1   1.1e+03     129     146 ..     296     313 ..     278     330 .. 0.74
   3 ?    6.2   0.0     0.019       9.5      12      52 ..     544     593 ..     535     599 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.68
                 ....TTSEEEEEESTTSTHHHHHHHHHHH CS
      ResIII  19 lkskrdkrglikmaTGtGKTlvaaklier 47 
                 l+ + +++ ++  + G+GKT +   l+er
  KIR61636.1 222 LSRRTKNNPVLIGEAGVGKTAIVEGLAER 250
                 333555677788999******98777766 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.1
                 HTTT-SEEEEETGGGTTS CS
      ResIII 129 lrdrfdviiiDEaHrlga 146
                  +  +++i+ DE H l +
  KIR61636.1 296 AHRDELIIFLDEIHTLVG 313
                 3444558999****9876 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.019
                 HHHHT..............TTS.EEEEEESTTSTHHHHHHHHHHHH-S.. CS
      ResIII  12 ienlleklks........krdk.rglikmaTGtGKTlvaaklierllkkg 52 
                 + +++e++          +r    +l+  +TG+GKT +  +l+e+l+ ++
  KIR61636.1 544 VGAVAEAVRRsrtgladpNRPMgSFLFLGPTGVGKTELGRALAEALFGEA 593
                 55555555444444544433325788999*********999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1052  (0.0586759); expected 358.6 (0.02)
Passed bias filter:                      749  (0.0417759); expected 358.6 (0.02)
Passed Vit filter:                       113  (0.00630264); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.46
# Mc/sec: 5596.41
//
Query:       KIR61637.1  [L=116]
Description: hypothetical protein TK50_29225 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-22   79.1   0.0    2.9e-22   78.9   0.0    1.0  1  DUF3140   Protein of unknown function (DUF3140)


Domain annotation for each model (and alignments):
>> DUF3140  Protein of unknown function (DUF3140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   1.6e-26   2.9e-22       1      91 [.      17     105 ..      17     106 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 1.6e-26
     DUF3140   1 eFnelVNmtakeLeeWLkteeSkevgekkdggesvghesGrkiveilrkkkadltdddlehmrkVvgyvkrhlaqeepegkvedtkwrysL 91 
                 +F++ VN+t+++L++WL t+ S +++    g++   +e Gr+i+++lrk+k dlt++d+e+mr+ v+++++ +a  +p++ v+d++wr+ L
  KIR61637.1  17 DFHAEVNVTSEQLRSWLLTRGSGTESFG-AGPDLDLPEPGRQILAVLRKRKVDLTREDIEVMREAVDRIRSLTAA-RPADGVADDEWRRAL 105
                 7*************************97.78****************************************9999.99999*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 780.67
//
Query:       KIR61638.1  [L=78]
Description: hypothetical protein TK50_29230 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 576.11
//
Query:       KIR61639.1  [L=337]
Description: LysR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-22   79.3   4.9    4.4e-22   78.5   4.9    1.3  1  LysR_substrate  LysR substrate binding domain
    3.6e-20   71.7   1.3    3.6e-20   71.7   1.3    1.7  2  HTH_1           Bacterial regulatory helix-turn-helix protein
    0.00048   19.9   0.0     0.0015   18.3   0.1    1.8  2  HTH_30          PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
       0.37   11.7   3.9        1.7    9.7   0.2    3.2  2  TPR_14          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   4.9   9.9e-26   4.4e-22      20     203 ..     106     290 ..      95     295 .. 0.92

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 9.9e-26
                     HHHHHHHHHHHHSTTEEEEEEEESH.HHHHHHHHTTSSSEEEEESSS.....CCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGGGCTSEEEE CS
  LysR_substrate  20 llppllarfraryPevelelvegds.eelldllaegelDlairagpp.....edsglearpLaeeplvlvaspdhpLargepvsledLadeplil 108
                     +l +l+ r++a++P+ ++   +++s +el++l+  g+lD a+++        +  gl++r++a ep+ ++++++hp a++++v+l dL+ e+++ 
      KIR61639.1 106 ILGRLVHRLAAAHPQAQITTYASWSaDELAQLVGGGRLDYALVGVCGdavppAGYGLTWREVALEPVQVLLPEQHPMADHDEVRLVDLRAEQWVA 200
                     788999*******************99***************976556677799***************************************** PP

                     ESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCCHHHHHHHHHH CS
  LysR_substrate 109 leegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrelspavrafidf 203
                      + + ++ d + +a+++ag++pr ++e+ ++  +++lv+aG  +al  + +  +    ++lv++ l++ pl+++l l +++++   + ++ ++++
      KIR61639.1 201 APGDGCFGDCFAAACARAGFTPRKVYEA-DVRGCIDLVEAGAAVALCQATFR-P---VPGLVTRRLAGAPLRWRLLLGWHPDSAGASFAEEVLEA 290
                     999999******************9997.69********************6.6...799999*******************9777777766665 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   1.3     8e-24   3.6e-20       1      60 []       5      64 ..       5      64 .. 0.98
   2 ?   -4.0   0.1       3.4   1.5e+04      16      28 ..     211     223 ..     211     225 .. 0.76

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 8e-24
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lr+lr+  a+ae+gs+t+AA  Lgl+qpa+++q++r E++lg pLfeR+ rg+r+T+ Ge
  KIR61639.1  5 LRHLRVVCAIAETGSVTKAASTLGLAQPALTAQLQRIERALGGPLFERDRRGARPTALGE 64
                79*******************************************************997 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 3.4
                 HHHHHHHHTS-HH CS
       HTH_1  16 ftrAAeeLglsqp 28 
                 f++A+ + g ++ 
  KIR61639.1 211 FAAACARAGFTPR 223
                 7889999988876 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   3.4e-07    0.0015       9      50 ..      14      55 ..       7      61 .. 0.87
   2 ?   -3.3   0.0       1.8   8.1e+03      35      49 ..     267     281 ..     267     284 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.4e-07
                HHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHH CS
      HTH_30  9 lenggnisatAkaLhvHrnTlryRLrrieellgldlddpddr 50
                +++ g+++++A +L++    l+  L+rie+ lg +l + d+r
  KIR61639.1 14 IAETGSVTKAASTLGLAQPALTAQLQRIERALGGPLFERDRR 55
                5667*****************************988776665 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.8
                 HHHHHHS--TTSHHH CS
      HTH_30  35 rieellgldlddpdd 49 
                 r++ llg+ +d++ +
  KIR61639.1 267 RWRLLLGWHPDSAGA 281
                 678899999998765 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.4      0.16   7.2e+02       2      26 ..      64      90 ..      63     100 .. 0.75
   2 ?    9.7   0.2   0.00037       1.7      17      39 ..     288     310 ..     279     312 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.16
      TPR_14  2 eallalaeall..alGdpdeAiallrr 26
                e+ la+a++ll   +G  deA++l+ +
  KIR61639.1 64 ELVLARARVLLpaMQGLQDEAARLAGA 90
                577999999954378999999998765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00037
      TPR_14  17 pdeAiallrralalaPddaeawl 39 
                 +++A+a++++ la++Pd ++++l
  KIR61639.1 288 LEAAVAVYDDSLATHPDYLAWLL 310
                 689**************877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 2145.22
//
Query:       KIR61640.1  [L=204]
Description: cation-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-11   43.2   0.9    1.2e-10   42.1   0.9    1.6  1  Hemerythrin  Hemerythrin HHE cation binding domain


Domain annotation for each model (and alignments):
>> Hemerythrin  Hemerythrin HHE cation binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.9   6.5e-15   1.2e-10       3     122 ..      24     126 ..      22     135 .. 0.73

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 6.5e-15
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH.CCC.HHHHHHHHHHHHHHHHHHHHHHHHCHTCGGS CS
  Hemerythrin   3 vealdeeHralrallerlraladaaaevhgalrklaelldelvdeleaHhaaEEellfPlledrpggravldvlereHdeirelleelrellkgleep 100
                  v+++ +eHr l++l++r+    +a       +++lae+++ l +++ +H+ aEE++lfP+++      av+ + +++ +e+++ +e l+ +lk+l+  
   KIR61640.1  24 VDLVGREHRQLLDLVDRVTGPDAA-------PQRLAEVVEVLTAVVSRHLSAEEQYLFPAVR-----AAVPGAAAAVDREVGAAAELLA-ALKSLA-- 106
                  677788999999999977544444.......899****************************.....5555555555555554443333.333444.. PP

                  TCHHHHHHHHHHHHHHHHHHHH CS
  Hemerythrin 101 saaafaelleeladllreHiak 122
                    + ++ +l+++ad +r+H+a 
   KIR61640.1 107 --GPADPALADVADRVRRHVAG 126
                  ..23456999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1500.20
//
Query:       KIR61641.1  [L=442]
Description: hypothetical protein TK50_29245 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-39  134.4   0.0    6.9e-39  133.7   0.0    1.4  1  Peptidase_M20  Peptidase family M20/M25/M40
    1.5e-14   53.8   0.1    4.2e-14   52.4   0.1    1.8  1  M20_dimer      Peptidase dimerisation domain
      8e-08   32.2   0.0    1.4e-06   28.1   0.1    2.1  2  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.7   0.0   1.2e-42   6.9e-39       1     207 []      85     441 ..      85     441 .. 0.91

  Alignments for each domain:
  == domain 1  score: 133.7 bits;  conditional E-value: 1.2e-42
                    EEEEES-BSS.TTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.THHHHHHHHHHTTTCESE CS
                    xxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVp.eeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.gGakallegleerekvda 93 
                    l+++HlDvVp ++++  w+  pfs++ +dG+l+GrGa dmk   +++l+++r+++++g++p ++ivl+f++dEE+g+  Ga +l++     ++ da
     KIR61641.1  85 LVHGHLDVVPaDADE--WSVhPFSGELRDGYLWGRGAIDMKDFDAMVLAVVRNWQRTGVRPARDIVLAFTADEEAGSdYGAHYLVQ-----HHRDA 173
                    579*******55555..*********************************************************9889********.....45566 PP

                    EEEEEEESSSBTCHSTETEEEE.......................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxx.......................................................................... RF
  Peptidase_M20  94 vfelhieepgileagklaigvv.......................................................................... 115
                    + ++    + i e g+++++v                                                                           
     KIR61641.1 174 FDGCT---EAIGEVGGFSYTVDasqrlylietaekgidwlrlhakgrpghgsmvhddnavtalaeavarigrhrfpvvvtdtvrafleevsdllgv 266
                    55554...334444666677778888999999999999999999999999999******************************************* PP

                    .........................................................................EEEEEEEEEESHEEEC.CHHHHH CS
                    .........................................................................xxxxxxxxxxxxxxxx.xxxxxx RF
  Peptidase_M20 116 .........................................................................kvevelleggapvtln.dsplvk 137
                                                                                             ++ +e ++++++ ++  d++lv+
     KIR61641.1 267 eldpedpeaaiaklgpianiigatirntanptrlaagykdnvipgratatidcrslpgqselleqqlrelvgpDIAIEYVHRQPALETTfDGDLVE 362
                    ************************************************************************87999988888888888******* PP

                    HHHHHHHHHH.TSCEEEEEESSSBHTHHHH..TTTEEEEE..EE.SSG....GCTTSTTTEEEHHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxx.xxxxxxxxxxxxxxxxxxx..xxxxxxxx..xx.xxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 138 alaeaaeelf.gekvelivsgpggtdarff..agiptvmi..fg.pgs....glaHspnEyvdledlekgikvlarllee 207
                    a+++a+++   g ++ +++ + ggtda+ f  +gi ++ +  +  p +    gl H+ +E+v ++ l+ g++vl r+l++
     KIR61641.1 363 AMSAALRAEDpGARPVPYMLS-GGTDAKAFsqLGIRCFGFapLRlPPDlnfsGLFHGIDERVPVDGLQFGVRVLDRFLRN 441
                    ********9999999999999.********8888899966696666544589************************9975 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.1   7.1e-18   4.2e-14       1      89 [.     202     326 ..     202     341 .. 0.91

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 7.1e-18
                 SEB-EEEEEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC..........................................TCCTCCCCCEE CS
   M20_dimer   1 ighkGlaggkitvkgkagHsgapgagaNAieklarllaeledeegdia.....................................eerslprttlnvtg 62 
                 +++kG+ + ++++kg+ gH+++ ++  NA+++la+++a++  +++++                                          + r t n+t 
  KIR61641.1 202 TAEKGIDWLRLHAKGRPGHGSMVHDD-NAVTALAEAVARIGRHRFPVVvtdtvrafleevsdllgveldpedpeaaiaklgpianIIGATIRNTANPTR 299
                 589******************77665.9*******************9**********************************99988888999****** PP

                 CCE-CCCCEESSEEEEEEEEEHHHHHH CS
   M20_dimer  63 iegGsaknvipdeaeakidiRllpged 89 
                 + +G++ nvip++a+a+id+R lpg++
  KIR61641.1 300 LAAGYKDNVIPGRATATIDCRSLPGQS 326
                 *************************98 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   2.4e-10   1.4e-06       2      86 ..      70     170 ..      69     188 .. 0.89
   2 ?    1.7   0.0      0.03   1.8e+02     109     166 ..     346     404 ..     332     420 .. 0.69

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 2.4e-10
                    EEEEESTTCE.SEEEEEEEE--B-TTT..............TCC.T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSG.SSHHHHH CS
  Peptidase_M28   2 viatlegkat.devlllgAHyDsvgvg..............rgp.ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEa.gllGSka 80 
                    ++a+++g ++    ll+ +H+D v+ +              +g     GA+D     a++L ++r  ++ g rp r+++++f+  EEa + +G+++
     KIR61641.1  70 LVARIPGADPgRDALLVHGHLDVVPADadewsvhpfsgelrDGYlWGRGAIDMKDFDAMVLAVVRNWQRTGVRPARDIVLAFTADEEAgSDYGAHY 165
                    699******9888************999****9999888764447778****************************************567***** PP

                    HHHHHC CS
  Peptidase_M28  81 fakakp 86 
                    ++ +++
     KIR61641.1 166 LV-QHH 170
                    **.543 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.03
                    EHHHHHHCHHHHHHHHHHHHHTT-TTSCCEEEEES...STT-STTHHHHTTT--EEEECTS CS
  Peptidase_M28 109 fesgdkssselekelkalakpvgraaaedpfders...grgrsDhspflkagvpvldlaet 166
                    ++++++ + ++ + l ++++++ ra+  dp  + +     g +D+ +f + g+ +  +a+ 
     KIR61641.1 346 VHRQPALETTFDGDLVEAMSAALRAE--DPGARPVpymLSGGTDAKAFSQLGIRCFGFAPL 404
                    46666666667777777777666665..44444444346788************9999554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3181.01
//
Query:       KIR61642.1  [L=221]
Description: hypothetical protein TK50_29250 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1972.96
//
Query:       KIR61643.1  [L=323]
Description: aldo/keto reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-65  218.8   0.0    9.7e-65  218.6   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.6   0.0   5.4e-69   9.7e-65       2     292 ..      16     311 ..      15     313 .. 0.92

  Alignments for each domain:
  == domain 1  score: 218.6 bits;  conditional E-value: 5.4e-69
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSST.TSSSS-HHHHHHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdae.iksglskeniresleeslkrL 97 
                   l lGt+++g    ++ ++a++ l+ +l+aG n++DtA+vYg+g +e ++G  l +  ++r+e++iatK +lr+++  ++++s+ ++ + l++sl+rL
    KIR61643.1  16 LALGTMTWGR--DTDADDAAAQLKSFLDAGGNLVDTADVYGDGDAESVIGSLLGS-LVPRDELLIATKAGLRPGSgRRRDGSRGHLLRTLDASLRRL 109
                   89*******8..6******************************************.*************988875267889**************** PP

                   T-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--.HHHHHHH....HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEB CS
  Aldo_ket_red  98 gtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfs.veqleka....kkkkkvkivavqveynllreleeegllelckkkgvpliay 189
                   gtd+vDl+++H  dp++p +ee+l+al++ v +G +r++GvSnfs ++  ++a       +  ++va qvey+ll++  e+++l++c+++g+++ ++
    KIR61643.1 110 GTDHVDLWQVHGYDPDTP-LEETLAALDHAVASGRVRYVGVSNFSgWQTARAAawqaAWPGRAPVVAAQVEYSLLERGVEREVLPACAALGLGVLPW 205
                   ******************.**************************9999998897555556788********************************* PP

                   STTGGGTTGTTTSS---SSSCCC-------...TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----H CS
  Aldo_ket_red 190 splggGlltgkyqseedkedkeprkdlkrd...ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklse 283
                   splg+G ltgky+  ++ ++  + ++++ +      ++    +e++   a   gvs+ ++al+++  +p+v+ +i+ga+++ ql   l++  ++l++
    KIR61643.1 206 SPLGRGVLTGKYRHGRPADSRAASPHFEPFvatYLEPRCSSIVEAVATAAGGLGVSPLEVALAWIRDRPGVTAPILGARTVGQLLGALQVERMTLPA 302
                   *************************999997764444555555666666667999************************************99***9 PP

                   HHHHHHHHH CS
  Aldo_ket_red 284 eevaeldel 292
                   e + +ld +
    KIR61643.1 303 EIIVALDDV 311
                   999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2278.37
//
Query:       KIR61644.1  [L=350]
Description: luciferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-82  275.0  10.2      1e-81  274.8  10.2    1.0  1  Bac_luciferase  Luciferase-like monooxygenase
      0.005   17.4   0.1        2.9    8.4   0.0    3.2  3  XdhC_C          XdhC Rossmann domain


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.8  10.2   1.1e-85     1e-81      20     313 ..      14     318 ..       1     319 [. 0.93

  Alignments for each domain:
  == domain 1  score: 274.8 bits;  conditional E-value: 1.1e-85
  Bac_luciferase  20 aslrylvelaraaEelGfdavwvaehhggpggaldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhlsgGRfglglgtggpavee 114
                      ++++ ++la++a++lG+  vw+ae++g     +d+ ++la++a++Teri +g+av+++++r+Pa++A++aat+d lsgGRf+lglg +gp+v e
      KIR61644.1  14 STPADHLALAQEADRLGYSVVWAAEAYG-----SDSPSMLAWIAGQTERIDVGSAVMQIPARTPAMTAMTAATIDTLSGGRFRLGLGVSGPQVSE 103
                     47899***********************.....9************************************************************* PP

  Bac_luciferase 115 rrfGvdhderyarlrEfvevlrrlwrgeevdfeGeffsv.......kgalllprpgqgp....iPvyvaaaspaglelaarhadglllageppee 198
                     +++Gv++++++ar+rE+v++++ + +++ev ++Gef+++       k      r g +p    +P+y+aa++p++lela+++adg+l +   pe 
      KIR61644.1 104 GWHGVRFAKPLARTREYVDIVKLAIARKEVAYDGEFYTLplpdgpgK----ALRLGFHPpreqVPIYLAAVGPKNLELAGEIADGWLAVFYAPEF 194
                     *************************99*********99999955553....4443333344459******************************* PP

  Bac_luciferase 199 aaelierlragaaeagrdpadirvgisltvivadteeeAraea...raliagld......fyaldsegagreaeaaeiqeeedanlwagaadavp 284
                     a e+++ ++ag a+ag++ a ++v++s++v+v+d+ + + + +   +al+ g++      fy++ + ++g++++a+e q+ + a+++++aa+avp
      KIR61644.1 195 ADEQLAAVAAGRAKAGKELAGFDVVPSVPVVVGDDVATCAELVrwyAALYVGGMgsrqqnFYNQLATRMGYGDAAREVQDLYLAKRQRDAAAAVP 289
                     *********************************999999999977788888888***************************************** PP

  Bac_luciferase 285 delvaatalvGtpeqvaerlaayaeagvd 313
                      e++++t l G+ e +aerl++ya+agv+
      KIR61644.1 290 MEFIDRTSLLGPKERIAERLREYAAAGVT 318
                     ***************************98 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.056     5e+02      10      30 ..      19      39 ..       4      83 .. 0.78
   2 !    8.4   0.0   0.00032       2.9      56      93 ..     228     265 ..     188     278 .. 0.75
   3 !    3.8   0.0    0.0088        79      72      95 ..     296     319 ..     277     327 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.056
                HHHHHHHHHHHTEEEEEEES- CS
      XdhC_C 10 aqalarlaaalgfrvtvvdpr 30
                  ala+ a +lg++v+++ + 
  KIR61644.1 19 HLALAQEADRLGYSVVWAAEA 39
                568999999999999998765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00032
                 HHHHHHHHHSS.S--SEEEESS-HHHHHHHCTTS.--... CS
      XdhC_C  56 lDaealeaalr.kkaayigllGSrkkaarrlerlraa.gl 93 
                  D + +++++r   a y+g +GSr+  ++++++l+ + g+
  KIR61644.1 228 DDVATCAELVRwYAALYVGGMGSRQ--QNFYNQLATRmGY 265
                 5778888888744477********9..8899998877666 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.0088
                 EEESS-HHHHHHHCTTS.--.... CS
      XdhC_C  72 igllGSrkkaarrlerlraaglse 95 
                   llG+++++a+rl++ +aag++ 
  KIR61644.1 296 TSLLGPKERIAERLREYAAAGVTT 319
                 579**************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2376.54
//
Query:       KIR61645.1  [L=278]
Description: UDP pyrophosphate phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-78  263.5  14.8    2.7e-78  263.3  14.8    1.0  1  BacA            Bacitracin resistance protein BacA
  ------ inclusion threshold ------
      0.014   14.6   0.6      0.021   14.1   0.0    1.5  2  DNA_processg_A  DNA recombination-mediator protein A


Domain annotation for each model (and alignments):
>> BacA  Bacitracin resistance protein BacA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.3  14.8     3e-82   2.7e-78       1     255 [.       6     264 ..       6     265 .. 0.92

  Alignments for each domain:
  == domain 1  score: 263.3 bits;  conditional E-value: 3e-82
        BacA   1 aiilGivqGltefLPvSSsGhlilveellglekedlllfdvvihlGtllAvlvlfrkdilrllkgllkslkkkkk.ekeelrlllliivatipaailgl 98 
                 ai+lG+vqGltefLPvSSsGhl ++++++ + +++ + f++v++lGt +Avl++f kdi+r++++++  l +++  ++ ++r+ +++iv++ip++++g+
  KIR61645.1   6 AIVLGVVQGLTEFLPVSSSGHLRITSAIF-FGRDAGASFTAVTQLGTEAAVLIYFAKDIWRITRTWIVGLWDRSVrASLDYRMGWYVIVGSIPIGLFGF 103
                 79**************************9.54444567****************************9999988877899******************** PP

        BacA  99 llkdlieellrsplvvaialivtglllllaeklrkkkkksledltlkdalliGlaQalAllPGvSRSGaTivaglllglsreaaaefSFllaiPailga 197
                 l+kd+i+++ r++++va++liv++++l +ae +  +++++le+ +++d +++G+aQa+Al+PGvSRSG T++aglll+l+reaaa++SFllaiPa++++
  KIR61645.1 104 LFKDQIRTAGRNLWLVATTLIVFAFVLAFAEYWG-RQHRTLENFRMRDGIVMGFAQAMALIPGVSRSGGTLTAGLLLNLTREAAARYSFLLAIPAVVMS 201
                 *******************************775.5788889********************************************************* PP

        BacA 198 gllk...llksa..ealtasellllvgfvvafvvallaikfllkllkkkklkvFaiYrivlGl 255
                 g+++   +++    ++ t s ++++v++++afv++++ai++ll+++ +++l+vF++Yr++lG 
  KIR61645.1 202 GIFSvgdVFEPSapGTSTPSGAQMVVATLIAFVIGYAAIAWLLRYVAHHTLYVFVLYRVALGT 264
                 **995554444466555566666699***********************************97 PP

>> DNA_processg_A  DNA recombination-mediator protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2      0.44     4e+03      75     102 ..      29      56 ..      21      57 .. 0.80
   2 ?   14.1   0.0   2.4e-06     0.021     128     184 ..     131     187 ..     122     192 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.44
  DNA_processg_A  75 ivSGlAlGiDaaahraaleaggktvavl 102
                     i S + +G Da a  +a+++ g+  avl
      KIR61645.1  29 ITSAIFFGRDAGASFTAVTQLGTEAAVL 56 
                     6677778999999999999999988887 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.4e-06
  DNA_processg_A 128 llseyppgtkpkkenFpeRnriiaglseavlvveaaekSGalitaelAlelgrevfa 184
                      ++ey+ +++ + enF +R+ i+ g+++a+ ++   ++SG   ta l l+l re  a
      KIR61645.1 131 AFAEYWGRQHRTLENFRMRDGIVMGFAQAMALIPGVSRSGGTLTAGLLLNLTREAAA 187
                     67899999*****************************************99999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1881.41
//
Query:       KIR61646.1  [L=202]
Description: hypothetical protein TK50_29275 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1531.75
//
Query:       KIR61647.1  [L=237]
Description: phosphoglycerate mutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-47  160.0   0.0    6.4e-47  159.8   0.0    1.0  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.8   0.0   3.6e-51   6.4e-47       1     194 []       7     201 ..       7     201 .. 0.95

  Alignments for each domain:
  == domain 1  score: 159.8 bits;  conditional E-value: 3.6e-51
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH..H CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidaiysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiaeeype 99 
                 l+L+RHG+t++na+g l gr+ v+L+++Gr+qA a++erl+g p++a+++Spl R+rqT el++   +  +++degL E+ +G weg++ +++a+e   
  KIR61647.1   7 LLLLRHGRTTANADGGLAGRQPVELDDTGRAQATAVGERLRGLPLAAVVTSPLVRCRQTLELALP--QAAPTVDEGLIECGYGSWEGQPLKKLAKE--P 101
                 68*************************************************************98..589******************99999999..6 PP

                 SHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHH....HHHHHTTTSE.EEEEE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS-EEEEEEEE CS
  His_Phos_1 100 eleawlrdpadvrppggEsledvaaRvaaale....elaarheget.vlvVsHggvirallarllglpleelrrleldnaslsvlefdeggwrlvrlnd 193
                  +   +++p+ v +p+gE ++++aaR++a+++    +++a+h+ e  +l +sHg vi+a++a++lg++l+ ++r+  d+as++ +++++ ++ l+rlnd
  KIR61647.1 102 LWPVVQQHPSAVVFPDGEAMAAMAARAVATVRswdaRITAEHGPEAvWLACSHGDVIKAIVADALGVHLDLFQRIVADPASVTAIRYTPLRPFLLRLND 200
                 666677788889********************9999999999999999**************************************************9 PP

                 - CS
  His_Phos_1 194 t 194
                 t
  KIR61647.1 201 T 201
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1626.31
//
Query:       KIR61648.1  [L=194]
Description: hypothetical protein TK50_29285 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-69  232.2   0.1    3.4e-69  232.0   0.1    1.0  1  DUF3090         Protein of unknown function (DUF3090)
  ------ inclusion threshold ------
      0.012   16.0   5.6       0.02   15.3   5.6    1.4  1  CENP-B_dimeris  Centromere protein B dimerisation domain
      0.013   15.3   0.5      0.041   13.7   0.0    1.9  2  Rad50_zn_hook   Rad50 zinc hook motif
       0.15   12.2   0.1       0.33   11.2   0.1    1.5  1  E7              E7 protein, Early protein
       0.38    8.8   2.0       0.57    8.2   2.0    1.2  1  Sporozoite_P67  Sporozoite P67 surface antigen
        1.3    9.3   8.6        1.5    9.1   7.8    1.5  1  DUF4611         Domain of unknown function (DUF4611)
        2.5    7.3   5.3        3.9    6.7   5.3    1.3  1  NOA36           NOA36 protein
        3.6    5.6   4.8        4.6    5.2   4.8    1.1  1  DNA_pol_phi     DNA polymerase phi


Domain annotation for each model (and alignments):
>> DUF3090  Protein of unknown function (DUF3090)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.0   0.1   1.5e-72   3.4e-69       1     171 []       6     186 ..       6     186 .. 0.95

  Alignments for each domain:
  == domain 1  score: 232.0 bits;  conditional E-value: 1.5e-72
     DUF3090   1 hefdspdrfvagtvGepGeRtFyLqaregervvsvalekeqvaaLaerieelLdelarregasvPaeaeeelkdeepLeepveeeFrvgtlalawDeet 99 
                 h+f++p+rfvagtvG+pGeRtF+Lqar g+r+vsvalek qv++Lae++eelL+e++rr+g+++P++  ++  d++pL++pv+eeFrvgtl+la+D +t
  KIR61648.1   6 HAFEPPERFVAGTVGPPGERTFFLQARGGGRLVSVALEKVQVSLLAEKLEELLTEAQRRFGVQLPEA-VTSVGDNDPLDTPVDEEFRVGTLGLAFDVDT 103
                 89***************************************************************97.899**************************** PP

     DUF3090 100 ervviealaleeeee...........deel..deeeeeeeaealrvrltreqarafakrarevvaaGrpsCplCgqPldpegHlC 171
                 ++vviea+a+ e+e+           d     d+ee +e+ ++lrvrlt+e++r+f++rar+vv+aGrp+CplCgqPldp+gHlC
  KIR61648.1 104 ATVVIEAIAAGEAETevelggdededD--DdeDDEEPDEDLDRLRVRLTPEATREFIERARRVVNAGRPPCPLCGQPLDPAGHLC 186
                 ************999999999775533..1457888888899******************************************* PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   5.6   8.9e-06      0.02       8      53 ..     113     157 ..     104     167 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.9e-06
  CENP-B_dimeris   8 agedsesesdeeeeeeeedeededeeddedddevpvpsfgeamayf 53 
                     age +e+e +   +e+e+d++++dee ded d + v    ea   f
      KIR61648.1 113 AGE-AETEVELGGDEDEDDDDEDDEEPDEDLDRLRVRLTPEATREF 157
                     343.456666667777777777888999999999888777776655 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.92   2.1e+03       7      16 ..      49      58 ..      44      63 .. 0.58
   2 ?   13.7   0.0   1.8e-05     0.041       5      31 ..     154     181 ..     152     183 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.92
                   HHHHHHHHHT CS
  Rad50_zn_hook  7 elnkkieelk 16
                   +l +k+eel 
     KIR61648.1 49 LLAEKLEELL 58
                   5555666653 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.8e-05
                    HHHHHHHHHHHTT-SE.E-TTT--EE-H CS
  Rad50_zn_hook   5 teelnkkieelkeakg.cCPlCgRelde 31 
                    t e+ +++  + +a+   CPlCg++ld+
     KIR61648.1 154 TREFIERARRVVNAGRpPCPLCGQPLDP 181
                    778888888888888889********97 PP

>> E7  E7 protein, Early protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00015      0.33      12      64 ..     114     179 ..     103     183 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                 XXXXXXX--S------XXXXXXXXXX..........XXXXXXXXXXEE.EEEEE...EXTTTXXEE CS
          E7  12 eeqpevldllceeelesedeeeeeed..........eptlkdktprrpgYavev...aCprCeqkl 64 
                  e +  ++l  +e  +++de++ee d          +p+   ++ +r    v++   +Cp C+q+l
  KIR61648.1 114 GEAETEVELGGDEDEDDDDEDDEEPDedldrlrvrlTPEATREFIERARRVVNAgrpPCPLCGQPL 179
                 444555999999999999999999998899998888666666666655444554222799999987 PP

>> Sporozoite_P67  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.0   0.00025      0.57      66     128 ..      72     140 ..      66     145 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00025
  Sporozoite_P67  66 avsvsddsktvptpvseeiitrsfqep..vsqeselqsdtei....neddkGskedseedddeeeeedn 128
                     av++ +d   + tpv ee    ++     v++ + + + +       e + G +ed+++dd+++ee d+
      KIR61648.1  72 AVTSVGDNDPLDTPVDEEFRVGTLGLAfdVDTATVVIEAIAAgeaeTEVELGGDEDEDDDDEDDEEPDE 140
                     89999999999*****99876655443335555544443333000023345778888888888887776 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   7.8   0.00068       1.5      45      91 ..     107     153 ..      96     156 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00068
     DUF4611  45 llstlveqeaqddvaaagdeeeegededdeeeekniknktksdePpa 91 
                 +++ +   ea+ +v+  gde+e+++deddee +++ +       P a
  KIR61648.1 107 VIEAIAAGEAETEVELGGDEDEDDDDEDDEEPDEDLDRLRVRLTPEA 153
                 5566667789999******************9998887666666655 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.3    0.0017       3.9     264     292 ..     112     141 ..      78     147 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0017
       NOA36 264 asgddeddeg.dedddddddeedddeeedd 292
                 a+g+ e++ +   d+d+ddd+edd+e ++d
  KIR61648.1 112 AAGEAETEVElGGDEDEDDDDEDDEEPDED 141
                 333222222202222222222222222222 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   4.8     0.002       4.6     660     683 ..     118     142 ..     105     166 .. 0.50

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.002
  DNA_pol_phi 660 edse.edddeeesdedeededdedv 683
                  +++e   d++e++d+++++e ded 
   KIR61648.1 118 TEVElGGDEDEDDDDEDDEEPDEDL 142
                  2222211111111111112222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      666  (0.0371465); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1396.84
//
Query:       KIR61649.1  [L=272]
Description: phosphatidylinositol kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0094   15.8   0.0      0.013   15.4   0.0    1.1  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase


Domain annotation for each model (and alignments):
>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     7e-07     0.013     142     184 ..     154     197 ..     152     215 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7e-07
                     HHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCC..TCSH CS
  PI3_PI4_kinase 142 laklsvldyilgngDRhldNilvdktsgklihIDfGlil..pdew 184
                     la+l+vld +++n+DR  +  l+   +  l  +D+G ++  +d+ 
      KIR61649.1 154 LARLAVLDAVINNADRKGGHVLL-GADDRLYGVDHGVSFhvEDKL 197
                     799********************.9999***********554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1873.43
//
Query:       KIR61650.1  [L=412]
Description: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-80  268.7   0.0    8.3e-80  268.3   0.0    1.0  1  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
      8e-06   24.8   0.0      0.011   14.5   0.0    2.1  2  tRNA-synt_1g  tRNA synthetases class I (M)
    2.8e-05   22.6   0.0    0.00014   20.2   0.0    1.8  2  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
     0.0086   15.0   0.0        2.9    6.7   0.0    2.1  2  tRNA-synt_1f  tRNA synthetases class I (K)
  ------ inclusion threshold ------
       0.26   10.6   0.1       0.45    9.8   0.0    1.4  2  tRNA-synt_1b  tRNA synthetases class I (W and Y)


Domain annotation for each model (and alignments):
>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.3   0.0   2.3e-83   8.3e-80      10     300 ..      38     337 ..      30     338 .. 0.93

  Alignments for each domain:
  == domain 1  score: 268.3 bits;  conditional E-value: 2.3e-83
                   EEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SB--BGGGGHH CS
  tRNA-synt_1e  10 vtlYvCGptvydashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDkiikrareeeksvkelaekfieefkkdleaLnvlkptleprvsekvd 106
                    t+YvCG+t yda+hlGha ++++fD+++r+  ++g  v++vqnvtDidD +++ra+++++ +k la +  + f +d+eaL + +p     + e ++
    KIR61650.1  38 ATMYVCGITPYDATHLGHAATMITFDLVQRMWLDAGLTVRYVQNVTDIDDPLLERAERDGEDWKVLAMRETALFREDMEALRMIPPAHYVGAVESIP 134
                   58*********************************************************************************************** PP

                   HHHHHHHHHHHTTSEEE-TT..S-EEE-GGG-TTTTTTTT--HHHHHHT----S-....-S-SSTT-EEEEEE--TTS--B--.TTSSEEE-SSHHH CS
  tRNA-synt_1e 107 eiielvekliekgyaYavsd..gdvyfdvskkeeYgklskqnleelelgaegevs....eekkdkkDfaLWkaskegepswds.PwgkGRPGWhieC 196
                   +i + v +l++ g aY  +d  gdvyfd  + +e+g  s+ +  e+ ++  +++     ++k+d+ D  LW+ ++egepsw+   +g GRPGWhieC
    KIR61650.1 135 DIADKVLTLLKDGAAYRLDDgtGDVYFDIAAAPEFGYESNLSRAEMLEIFPERGGdperAGKRDPLDPLLWRGAREGEPSWPGgDLGPGRPGWHIEC 231
                   *******************9889************9877776665555444444345569*********************96379*********** PP

                   HHHHHHHH-SSEEEEEEEGGGTTTHHHHHHHHHHHHSS.S--EEEEEEE--EEETTBE--TTTT---BHHHH.HTTS-HHHHHHHHHSS-TTS-EEE CS
  tRNA-synt_1e 197 svmaskllgseidihsGGiDLafPhhenelaqseaafd.kqlvkyflhnghlkiegekmsksLknfitikdv.lkkfdprqlRllllsahyrsqldf 291
                   +v+a +llg++id+ +GG+DL+fPhhe  +a +e +++ ++++ +++h+g++ ++gekmsks +n++++  +   ++dp+++Rl l+  hyr    +
    KIR61650.1 232 AVIALNLLGESIDVQGGGNDLLFPHHECSAAHAERLTGrSPFATHYVHAGMIGLNGEKMSKSKGNLVFVSRLrADRVDPMAVRLGLMAGHYRADRTW 328
                   **************************************999****************************9873579********************* PP

                   -HHHHHHHH CS
  tRNA-synt_1e 292 keelleeak 300
                   ++ell++a+
    KIR61650.1 329 TDELLAAAQ 337
                   ****99886 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00024      0.87      12      81 ..      49     118 ..      38     133 .. 0.89
   2 !   14.5   0.0     3e-06     0.011     311     356 ..     273     319 ..     252     336 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00024
                   S---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHT CS
  tRNA-synt_1g  12 gklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkkl 81 
                   +++HlGh++++i  D + R+    g  v +v        p   +Ae+ g + + l+ + ++ ++e+++ l
    KIR61650.1  49 DATHLGHAATMITFDLVQRMWLDAGLTVRYVQNVTDIDDPLLERAERDGEDWKVLAMRETALFREDMEAL 118
                   578****************************998889999999999999999999999999999988776 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3e-06
                   --S-EEEE--EEE--------------HHHHHHH.H-HHHHHHHHHH CS
  tRNA-synt_1g 311 lpkkvvaheyltvegkKlSkSrgvvvkakealer.ldadllRYylaa 356
                   + ++ v  +++ ++g+K+SkS+g++v+++ +    +d+ ++R  l+a
    KIR61650.1 273 FATHYVHAGMIGLNGEKMSKSKGNLVFVSRLRADrVDPMAVRLGLMA 319
                   5666677899******************9886555999999987776 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.066   2.4e+02      38      66 ..      51      79 ..      41      84 .. 0.90
   2 !   20.2   0.0     4e-08   0.00014     519     595 ..     245     322 ..     241     329 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.066
  tRNA-synt_1 38 lHiGhalaktlkdivirykrmkGkevlyv 66
                  H+Gha + +  d+v r+    G +v+yv
   KIR61650.1 51 THLGHAATMITFDLVQRMWLDAGLTVRYV 79
                 7*****************99999999987 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 4e-08
  tRNA-synt_1 519 mlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmSKslgNvidpldv.ikkygadalRltlilsdv 595
                  +   G D ++   + ++  + +ltg++Pf + +vh+ ++  +G KmSKs+gN +  + + ++++   a+Rl l+  ++
   KIR61650.1 245 VQGGGNDLLFPHHECSAAHAERLTGRSPFATHYVHAGMIGLNGEKMSKSKGNLVFVSRLrADRVDPMAVRLGLMAGHY 322
                  5556778888888888888999******************************87544331555555566666665555 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0008       2.9      28      72 ..      42      86 ..      27      93 .. 0.91
   2 !    6.1   0.0    0.0012       4.5     258     293 ..     264     301 ..     239     311 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0008
  tRNA-synt_1f 28 esGispSGliHiGnlrevltadlvaralrkrgeevrlilisDdmD 72
                    Gi+p    H+G +  ++t dlv+r   + g +vr +  + d+D
    KIR61650.1 42 VCGITPYDATHLGHAATMITFDLVQRMWLDAGLTVRYVQNVTDID 86
                  579***********************************9999998 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0012
  tRNA-synt_1f 258 aeilggeaPekvvY...elillkggekmssSkGnvltle 293
                   ae l g+ P    Y    +i+l+g+ kms+SkGn + ++
    KIR61650.1 264 AERLTGRSPFATHYvhaGMIGLNGE-KMSKSKGNLVFVS 301
                   5667778888888833346777666.********98776 PP

>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   0.2       2.7   9.6e+03       9      26 ..      42      59 ..      40      64 .. 0.79
   2 ?    9.8   0.0   0.00013      0.45     185     210 ..     276     299 ..     242     308 .. 0.72

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 2.7
                  EEEEETSSS-BGGGHHHH CS
  tRNA-synt_1b  9 ysGidPTgklHlGylvpl 26
                  ++Gi P    HlG+   +
    KIR61650.1 42 VCGITPYDATHLGHAATM 59
                  789999889999997766 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00013
                   EEEET-BBSTTSSSBTTCETTCGC-B CS
  tRNA-synt_1b 185 gltvplltgldGekKmSKSagnsaIf 210
                   + ++  + gl+Ge KmSKS+gn  +f
    KIR61650.1 276 HYVHAGMIGLNGE-KMSKSKGN-LVF 299
                   444557999****.********.666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3202.40
//
Query:       KIR61651.1  [L=263]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-24   87.0   0.3      2e-24   86.0   0.3    1.4  1  UTRA            UTRA domain
    2.7e-17   62.2   0.1    6.2e-17   61.0   0.1    1.7  2  GntR            Bacterial regulatory proteins, gntR family
      9e-05   22.3   0.1    0.00044   20.1   0.0    2.3  2  MarR_2          MarR family
    0.00027   21.0   0.1    0.00071   19.7   0.1    1.8  1  HTH_28          Helix-turn-helix domain
    0.00042   20.3   0.0      0.001   19.1   0.0    1.7  1  HTH_29          Winged helix-turn helix
    0.00054   19.7   0.0     0.0079   16.0   0.0    2.7  3  HTH_23          Homeodomain-like domain
     0.0045   16.7   0.4      0.009   15.7   0.0    1.7  2  HTH_41          Helix-turn-helix domain
     0.0045   16.9   0.0      0.012   15.6   0.0    1.7  1  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0086   16.4   0.2      0.027   14.8   0.0    1.9  2  Rrf2            Transcriptional regulator
  ------ inclusion threshold ------
      0.016   15.2   0.0      0.033   14.2   0.0    1.4  1  HTH_11          HTH domain
      0.017   14.6   0.0      0.079   12.4   0.0    2.2  2  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.042   13.8   0.0       0.07   13.1   0.0    1.3  1  TBPIP           TBPIP/Hop2 winged helix domain
      0.045   13.9   0.0        0.1   12.8   0.0    1.6  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.073   12.6   0.2       0.28   10.8   0.0    2.0  2  HTH_24          Winged helix-turn-helix DNA-binding
        0.2   11.5   2.2       0.47   10.3   0.0    2.8  3  HTH_AsnC-type   AsnC-type helix-turn-helix domain
        0.2   11.6   0.0       0.39   10.7   0.0    1.5  1  HTH_36          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> UTRA  UTRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.3   1.8e-27     2e-24       5     137 ..     102     236 ..      99     239 .. 0.92

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 1.8e-27
                 SEEEEEEEEEEEE--HHHHHHHTS-TTSEEEEEEEEEEETTEEEEEEEEEEEGGGTTTCHHHHHH..CS-HHHHHHHHHTTSEEEEEEEEEEEE--HHH CS
        UTRA   5 epktevlsleevpasaeiaeaLglpagepvlrieRlrladgepvaleesylpaslvpdlleedle..egslyayleerlgvpitraeetiearladaee 101
                 +++ +++s+ + pa++e+a a+g+++g+++l+ + l ++++ pv +  s++ ++   +++ e  e  +++ly+  ee +g +++ a  ti+ar +++ee
  KIR61651.1 102 RYRQQLVSVGRAPAPPEVADAFGVADGTELLCRRHLVRTEDSPVEVGASWFLPADTAGTTLERGEafGRPLYQEAEEATGRQYVTATDTITARQPSREE 200
                 567899*******************************************987665556665544445******************************** PP

                 HHHHTSTTT-EEEEEEEEEEETTSCEEEEEEEEEET CS
        UTRA 102 aelLgisagspvLviervtydadgrpveysrsyyrg 137
                 ae L+i +++pvL++  v+yda  +p+e+++ +++g
  KIR61651.1 201 AETLQIRPDTPVLHLLHVAYDARRKPIEVAQATWPG 236
                 *********************************997 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.1   5.5e-20   6.2e-17       3      64 .]      13      74 ..      11      74 .. 0.98
   2 ?   -3.6   0.0       8.3   9.3e+03      29      36 ..     118     125 ..     114     127 .. 0.81

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 5.5e-20
                HHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  3 eqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                +q++++L++++++g + pG++LPs  ++a++fgV ++tv++A ++L  eg+++ ++g+Gt+V
  KIR61651.1 13 RQIAAQLKAQVRRGDWGPGERLPSIPAIAEMFGVAKQTVQRAVDQLRVEGILITKPGSGTYV 74
                79***********************************************************9 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 8.3
                 HHHHHHTS CS
        GntR  29 eLaaefgV 36 
                 e+a++fgV
  KIR61651.1 118 EVADAFGV 125
                 89999*99 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.9e-07   0.00044      18      57 ..      30      70 ..       9      72 .. 0.86
   2 ?   -2.1   0.0       3.4   3.8e+03      12      34 ..     108     126 ..      99     129 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.9e-07
                TTSEE.EHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESS CS
      MarR_2 18 pgrdl.tvgelarrlglsksavsrilkrLvaaGLverrpgp 57
                pg++l ++ ++a+ +g+ k++v+r+++ L   G + ++pg+
  KIR61651.1 30 PGERLpSIPAIAEMFGVAKQTVQRAVDQLRVEGILITKPGS 70
                44467799*************************99999986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.4
                 HHHHCTTTSEEEHHHHHHHHTSS CS
      MarR_2  12 aaLgrrpgrdltvgelarrlgls 34 
                   +gr+p    ++ e+a+++g+ 
  KIR61651.1 108 VSVGRAP----APPEVADAFGVA 126
                 5566666....788888888876 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   6.3e-07   0.00071      14      51 ..      36      71 ..      12      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.3e-07
      HTH_28 14 svreaArelgisrrtvyrWikryeegGiagLvprrrrp 51
                s++++A+ +g+  +tv+r + +++ +Gi  L ++++++
  KIR61651.1 36 SIPAIAEMFGVAKQTVQRAVDQLRVEGI--LITKPGSG 71
                8999************************..99999975 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   9.1e-07     0.001      14      52 ..      36      72 ..      21      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 9.1e-07
      HTH_29 14 tvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgr 52
                ++  iA++ g+ ++tv+r+++  + +G+  l+ +++sg 
  KIR61651.1 36 SIPAIAEMFGVAKQTVQRAVDQLRVEGI--LITKPGSGT 72
                6999***********************8..777788875 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.4   1.6e+03      19      28 ..      11      20 ..       7      25 .. 0.80
   2 !   16.0   0.0     7e-06    0.0079      19      46 ..      36      63 ..      36      64 .. 0.91
   3 ?   -1.1   0.0       1.6   1.8e+03      21      30 ..     117     126 ..     116     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.4
      HTH_23 19 svreIAreLg 28
                + r+IA++L 
  KIR61651.1 11 PHRQIAAQLK 20
                7899999985 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 7e-06
      HTH_23 19 svreIAreLgvsrrTvyrwlkryreeGl 46
                s+++IA+++gv ++Tv+r +   r eG+
  KIR61651.1 36 SIPAIAEMFGVAKQTVQRAVDQLRVEGI 63
                6899****************99987885 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.6
      HTH_23  21 reIAreLgvs 30 
                 +e+A+++gv 
  KIR61651.1 117 PEVADAFGVA 126
                 79******96 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.1e-06     0.009       3      36 ..      31      64 ..      30      74 .. 0.89
   2 ?   -3.1   0.4       5.8   6.5e+03      40      47 ..      85      92 ..      84      92 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.1e-06
      HTH_41  3 GdRlktIeelakeleLSvGlvQkALklLeddkai 36
                G+Rl++I+ +a+ +++   +vQ A+  L  +++ 
  KIR61651.1 31 GERLPSIPAIAEMFGVAKQTVQRAVDQLRVEGIL 64
                9***************************998865 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.8
      HTH_41 40 rrGrlGtf 47
                +rGr G f
  KIR61651.1 85 SRGRYGGF 92
                69999977 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     1e-05     0.012      27      52 ..      40      65 ..      27      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1e-05
                HHHHTTSSHHHHHHHHHHHHHTTSEE CS
   HTH_Crp_2 27 lAsmlGltretvsrilseLkreglis 52
                +A+m G+  +tv r+  +L+ eg++ 
  KIR61651.1 40 IAEMFGVAKQTVQRAVDQLRVEGILI 65
                9**********************976 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.4e-05     0.027      23      63 ..      32      71 ..      29      75 .. 0.89
   2 ?   -3.1   0.1       9.2     1e+04      58      66 ..      85      93 ..      80      93 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.4e-05
                CC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-T CS
        Rrf2 23 eepvsseeiaerqnispsylekilakLrkaglvksvrGkgG 63
                e+  s+ +iae++++ ++ +++ + +Lr +g++ ++ G  G
  KIR61651.1 32 ERLPSIPAIAEMFGVAKQTVQRAVDQLRVEGILITKPGS-G 71
                5557899*******************************9.5 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.2
                ETTT-TCEE CS
        Rrf2 58 vrGkgGGyr 66
                 rG+ GG+r
  KIR61651.1 85 SRGRYGGFR 93
                69****985 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.9e-05     0.033      18      53 ..      37      71 ..      35      73 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.9e-05
      HTH_11 18 geeLAeeLnvSrrtvrrdIkaLeelgvpIesepgrG 53
                +  +Ae ++v ++tv+r +++L+  g  ++ +pg+G
  KIR61651.1 37 IPAIAEMFGVAKQTVQRAVDQLRVEG-ILITKPGSG 71
                5689**********************.666667665 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     7e-05     0.079      30      51 ..      37      58 ..      32      59 .. 0.88
   2 ?   -2.3   0.0       2.7     3e+03      32      43 ..     118     129 ..     118     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7e-05
  HTH_Tnp_ISL3 30 vkavArqlgvSwtTVwrildry 51
                  + a+A+++gv   TV+r++d++
    KIR61651.1 37 IPAIAEMFGVAKQTVQRAVDQL 58
                  559****************986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.7
  HTH_Tnp_ISL3  32 avArqlgvSwtT 43 
                   +vA+ +gv + T
    KIR61651.1 118 EVADAFGVADGT 129
                   69******9877 PP

>> TBPIP  TBPIP/Hop2 winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.3e-05      0.07      29      51 ..      45      67 ..      39      69 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.3e-05
       TBPIP 29 klgKtavqkaLdeLvdegkiieK 51
                ++ K++vq+a+d+L+ eg +i+K
  KIR61651.1 45 GVAKQTVQRAVDQLRVEGILITK 67
                589***************99998 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.3e-05       0.1      27      59 ..      39      71 ..      31      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.3e-05
                    HHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTE CS
  Fe_dep_repress 27 dlaerLnvspssVsemlkkLekdGyveyekykg 59
                     +ae  +v++ +V+  +  L+ +G +++++ +g
      KIR61651.1 39 AIAEMFGVAKQTVQRAVDQLRVEGILITKPGSG 71
                    79**************************99776 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00025      0.28      20      47 ..      37      64 ..      36      65 .. 0.90
   2 ?   -1.9   0.1       2.3   2.6e+03      33      41 ..      76      84 ..      71      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00025
      HTH_24 20 qreLAerlglSpstvnrrlkrLeeeGlI 47
                +  +Ae+ g+ ++tv r +++L  eG++
  KIR61651.1 37 IPAIAEMFGVAKQTVQRAVDQLRVEGIL 64
                668*******************999985 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.3
      HTH_24 33 tvnrrlkrL 41
                 ++rrl+rL
  KIR61651.1 76 GTRRRLNRL 84
                5789***99 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00042      0.47      20      42 .]      37      59 ..      36      59 .. 0.91
   2 ?   -2.2   0.6       3.5     4e+03      35      41 ..      78      84 ..      77      85 .. 0.86
   3 ?   -2.5   0.0       4.4   4.9e+03      14      26 ..     220     232 ..     213     233 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00042
  HTH_AsnC-type 20 yaeLAervGlSestvlrRvrrLe 42
                     ++Ae+ G++ +tv+r v++L+
     KIR61651.1 37 IPAIAEMFGVAKQTVQRAVDQLR 59
                   568****************9996 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.5
  HTH_AsnC-type 35 lrRvrrL 41
                   +rR++rL
     KIR61651.1 78 RRRLNRL 84
                   89***99 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 4.4
  HTH_AsnC-type  14 edaRisyaeLAer 26 
                     daR+   e+A++
     KIR61651.1 220 YDARRKPIEVAQA 232
                    5799988888876 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00035      0.39      26      53 ..      35      62 ..      29      64 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00035
      HTH_36 26 psqetlakrlglsknTvsraikeLeqlG 53
                ps   +a+ +g+ k+Tv+ra++ L+  G
  KIR61651.1 35 PSIPAIAEMFGVAKQTVQRAVDQLRVEG 62
                89999******************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1780.48
//
Query:       KIR61652.1  [L=289]
Description: carboxylate--amine ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-54  183.0   0.0    8.9e-54  182.7   0.0    1.1  1  PAC2        PAC2 family
  ------ inclusion threshold ------
      0.086   12.9   0.0        1.1    9.3   0.0    2.2  2  TrbC_Ftype  Type-F conjugative transfer system pilin assembly


Domain annotation for each model (and alignments):
>> PAC2  PAC2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.7   0.0   9.9e-58   8.9e-54       1     209 [.      18     233 ..      18     237 .. 0.95

  Alignments for each domain:
  == domain 1  score: 182.7 bits;  conditional E-value: 9.9e-58
                 EEEESSCGGGHHHHHHHHHHHHTTEEEEEEEEHCCHSBCCCC.SEEEEETT..EEE-SEEE...EEETTT..SEEEEEEEE-HSCHHHHHHHHHHHHHH CS
        PAC2   1 LilGfpgiGnVgqlavdlLiesleaekvgeidsdyllpfvgprpvvlveeg..relepprl...yakdsg.srdllvlqgrepilqyeefakalldwae 93 
                 +++G++++  + + av++L + ++a++v e+d++++++f++ rp++++ +g  r++e+p++   +a+++g +rd+++++g+ep++++++f++++l+++ 
  KIR61652.1  18 AFEGWNDAADASTAAVEHLEQVWQARQVTELDPEDFYDFQVSRPTITMADGetRRVEWPTTrfmVASPEGtERDVVLIRGIEPSMRWRTFCEQVLEICH 116
                 589******************************************9999999*********9866564446**************************** PP

                 HTTESEEEEEEEEEESS-ES..TTS-.EEEEEESSHHHHHHHH..CT-CEEEEHHHHHHHHHHHHTT-EEEEEEEEEECCC...--HHHHHHHHHHHHH CS
        PAC2  94 elgvkevvvLggldageradvphtrpekvtgaatdeelleele..eseyggivgitglLlsaakergipavgllaevphyl...pdPkaaaalleflsk 187
                 +l+v++vv+Lg+l     advp trp++++g a+d e +++++   ++y g++gi g+L +a+ +++++av+++++vphy    p+Pka++all+++++
  KIR61652.1 117 SLEVERVVLLGALL----ADVPYTRPLPISGSASDAEAARRYQltPTRYDGPTGIVGVLHDACTRAEVDAVSFWVHVPHYAnnpPCPKATLALLHRVEE 211
                 **************....9********************99954466*********************************99988************** PP

                 HHT---HCHHHHHHHHHHHHHH CS
        PAC2 188 llglevdtedLeedaeeleeql 209
                 +l+l v++ dL e+a+e+e+++
  KIR61652.1 212 VLDLPVPMADLAEEAAEWEQRV 233
                 *******************987 PP

>> TrbC_Ftype  Type-F conjugative transfer system pilin assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00013       1.1      26      83 ..      17      71 ..      10      84 .. 0.81
   2 ?    0.9   0.0     0.051   4.6e+02      23      50 ..      90     117 ..      78     126 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00013
  TrbC_Ftype 26 lvlrGfpegk.slketvkalaklleeemekasvqidPllFrqfkitaVPalvlaeedka 83
                  + G  +    ++++v+ l++++++   ++  ++dP+ F  f++++ P++ +a ++++
  KIR61652.1 17 AAFEGWNDAAdASTAAVEHLEQVWQA---RQVTELDPEDFYDFQVSR-PTITMADGETR 71
                67888888877778888888888888...77889***********98.99999887765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.051
  TrbC_Ftype  23 gavlvlrGfpegkslketvkalakllee 50 
                 ++v+++rG+  +++ +++ +++ ++ ++
  KIR61652.1  90 RDVVLIRGIEPSMRWRTFCEQVLEICHS 117
                 56999****9999999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 1900.19
//
Query:       KIR61653.1  [L=317]
Description: ketopantoate reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-07   31.7   0.0    1.7e-07   31.0   0.0    1.4  1  ApbA      Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   9.7e-12   1.7e-07       1     103 [.       3     109 ..       3     143 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 9.7e-12
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHH.HHHHCEEEEETT....CEEEEEECEEECCH.......SCCCCS-ESEEEE-SSGGGHHHHHHH CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsrrlea.lkknGlrltseg....geeilrppealsae.......ekselepidlvivtvKayqteealee 87 
                 i+  G G iG ++++ L +ag++v +++r  r++a     +l+l + +    g+++ +       +       + + +++++l++++v  y+ +ea + 
  KIR61653.1   3 ILMFGRGVIGAVYGWALERAGHHVEFYVRPGRAAAyGDAIDLDLLDARrlpwGKRVTE-------KwpvryreSLEPDHDFELIVLSVQHYSFAEATAF 94 
                 6789***************************777757777888888886777333222.......112233334689********************** PP

                 HGGGECTCEEEEEESS CS
        ApbA  88 ikplldpntvvlllqN 103
                 + p+++   +vl++ N
  KIR61653.1  95 LGPRVGGA-TVLVFNN 109
                 *******8.6666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.54
# Mc/sec: 1773.56
//
Query:       KIR61654.1  [L=191]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-10   40.2   0.4    8.1e-10   38.3   0.1    2.2  2  TetR_N     Bacterial regulatory proteins, tetR family
     0.0031   17.8   0.3     0.0077   16.5   0.3    1.7  1  TetR_C_24  Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
       0.03   14.4   0.1      0.073   13.2   0.1    1.7  1  TetR_C_29  Tetracyclin repressor-like, C-terminal domain
       0.14   12.5   2.2       0.28   11.6   1.1    1.8  2  SATase_N   Serine acetyltransferase, N-terminal


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.1   1.8e-13   8.1e-10       1      47 []      18      63 ..      18      63 .. 0.97
   2 ?   -1.9   0.0      0.68     3e+03       7      17 ..      98     108 ..      97     114 .. 0.77

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 1.8e-13
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                +l+ Arelfa + +d + +++ Ak AGv+ g+lYr+Fp++e+L+ea+
  KIR61654.1 18 LLAKARELFANNCFD-LRFDDFAKLAGVGTGTLYRHFPTREALAEAV 63
                6999***********.*****************************97 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.68
                 HHHHHHHTTT- CS
      TetR_N   7 elfaerGydat 17 
                  l a++G ++t
  KIR61654.1  98 HLHAHQGLART 108
                 58899999988 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.3   1.7e-06    0.0077       3      84 ..      83     161 ..      81     166 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.7e-06
                 SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB.-SS-HHHHHHHHHHHH CS
   TetR_C_24   3 spaerLralvrahveviaeereeaavllrelraLspehreeiralrreyerllrdlieeGvaagef.edldpklaalailgml 84 
                 +++e L++++r +v+++  +++ a+     l aL + + +++++  ++++++++dl++ +++ag++ +d+ +  ++ a+ g++
  KIR61654.1  83 PADEALESFLRGLVAHLHAHQGLART----LAALMATRPDAMAEGAQALQQVVADLLASAAEAGTVrDDVSAGAVMIALQGIC 161
                 67788888888888888888887766....677888888888999999******************66666666666666666 PP

>> TetR_C_29  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.6e-05     0.073      39      87 ..     116     164 ..      85     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
                 TS--SS-.THHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHHHHHHH CS
   TetR_C_29  39 ksesirelnspliekleeilerGqaagvFrpgvdaldlyllisslcffr 87 
                 + ++++e +++l + ++++l+  ++ag  r++v+a  ++++  ++c  +
  KIR61654.1 116 RPDAMAEGAQALQQVVADLLASAAEAGTVRDDVSAGAVMIALQGICAAY 164
                 45667777889999****************************9999865 PP

>> SATase_N  Serine acetyltransferase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.14   6.3e+02      60      92 ..      61      93 ..      49      98 .. 0.60
   2 ?   11.6   1.1   6.3e-05      0.28      19      79 ..      88     150 ..      75     154 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.14
                HHHHHH-THHHHHHHHHHHHHHHH-TT---THH CS
    SATase_N 60 eealeadpeiveaaraDlkAvlerDpAcksyle 92
                e +++++       ++ l+A+l  D A +s+l 
  KIR61654.1 61 EAVYREELAALCDRARALHATLPADEALESFLR 93
                444454444444444457777777777777665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 6.3e-05
                 GHHHHH...HHTTT-SSHHHHHHHHHHHHH-BSSS-HHHHHHHHHHHHHH-THHHHHHHHHHHH CS
    SATase_N  19 lasfly...atilsheslesaLaflLanklasstlsaeqlrelfeealeadpeiveaaraDlkA 79 
                 l+sfl+   a++  h+ l++ La+l+a++ +  +  a++l++++++ l+++ e   ++r D+ A
  KIR61654.1  88 LESFLRglvAHLHAHQGLARTLAALMATRPDAMAEGAQALQQVVADLLASAAEA-GTVRDDVSA 150
                 444443111667789999999999999999999999999999999999988755.467788776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.58
# Mc/sec: 995.35
//
Query:       KIR61655.1  [L=124]
Description: hypothetical protein TK50_29330 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-13   49.9   3.2    4.4e-13   49.4   3.2    1.3  1  HTH_31    Helix-turn-helix domain
    7.3e-06   26.0   0.1    1.2e-05   25.3   0.1    1.4  1  HTH_3     Helix-turn-helix
    2.9e-05   24.0   0.0    3.8e-05   23.6   0.0    1.1  1  HTH_19    Helix-turn-helix domain
  ------ inclusion threshold ------
       0.02   14.7   1.2       0.12   12.2   0.5    2.2  2  HTH_23    Homeodomain-like domain
      0.052   13.6   0.0      0.088   12.9   0.0    1.5  1  KorB      KorB domain
      0.065   13.2   0.0      0.093   12.7   0.0    1.2  1  HTH_37    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   3.2   1.5e-16   4.4e-13       1      58 [.       7      64 ..       7      72 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 1.5e-16
      HTH_31  1 aLGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldp 58
                a+G++++++R+r++++q+ +A+rlg s+s++ ++E+G r + + +v++ +a++l++d 
  KIR61655.1  7 AIGRRVAQWRARRRMTQQMLADRLGKSKSWVDKVERGVRALDRFSVIRDVAEVLRVDA 64
                58******************************************************85 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   3.9e-09   1.2e-05       2      53 ..      13      65 ..      12      67 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 3.9e-09
                HHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCS.BHHHHHHHHHHHTSEHH CS
       HTH_3  2 kelRkqlglsqeeLAeklGvsrstisriEnGernP.sletlkklakaLgvsld 53
                +++R  + ++q++LA++lG s+s + + E+G r+  + +++  +a++L v+ +
  KIR61655.1 13 AQWRARRRMTQQMLADRLGKSKSWVDKVERGVRALdRFSVIRDVAEVLRVDAT 65
                689999*************************6665157888888888888765 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.3e-08   3.8e-05       1      61 [.       9      69 ..       9      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.3e-08
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aelllkiaealgidleyllq 61
                G+r+ + R  + +tq++la+rlg s+s   + E g +  ++  ++++++ae l +d++ ll 
  KIR61655.1  9 GRRVAQWRARRRMTQQMLADRLGKSKSWVDKVERGVR-ALDrFSVIRDVAEVLRVDATILLG 69
                9**********************************99.77779999*****99999988876 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   3.9e-05      0.12      13      39 ..      15      42 ..      10      47 .. 0.80
   2 ?    0.9   0.0      0.15   4.4e+02       3      19 ..      45      61 ..      43      65 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.9e-05
      HTH_23 13 llae.GlsvreIAreLgvsrrTvyrwlk 39
                  a+ +++++  A++Lg s+++v+++ +
  KIR61655.1 15 WRARrRMTQQMLADRLGKSKSWVDKVER 42
                44445*******************9865 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.15
      HTH_23  3 sereRlrillllaeGls 19
                ++++R+++++ +ae l+
  KIR61655.1 45 RALDRFSVIRDVAEVLR 61
                57788888888887655 PP

>> KorB  KorB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.9e-05     0.088       4      21 ..      21      38 ..      18      61 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.9e-05
        KorB  4 vkqadIAkaLGksksfvs 21
                ++q+  A++LGksks+v 
  KIR61655.1 21 MTQQMLADRLGKSKSWVD 38
                78999***********95 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.1e-05     0.093      21      61 ..      10      52 ..       7      61 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.1e-05
                HHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT..--TT--H CS
      HTH_37 21 laiaeliekrelsqseaaqllgiaqPkvsrllrg..klsrfsl 61
                +++a+ +++r+ +q+ +a +lg +++ v++++rg   l+rfs+
  KIR61655.1 10 RRVAQWRARRRMTQQMLADRLGKSKSWVDKVERGvrALDRFSV 52
                6789999*************************98444666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.36s 00:00:00.90 Elapsed: 00:00:00.54
# Mc/sec: 687.39
//
Query:       KIR61656.1  [L=81]
Description: hypothetical protein TK50_29335 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 529.02
//
Query:       KIR61657.1  [L=59]
Description: 50S ribosomal protein L32 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-22   80.1   8.6    1.1e-22   80.0   8.6    1.0  1  Ribosomal_L32p  Ribosomal L32p protein family
  ------ inclusion threshold ------
       0.05   13.6   0.3      0.051   13.6   0.3    1.1  1  FeThRed_B       Ferredoxin thioredoxin reductase catalytic be


Domain annotation for each model (and alignments):
>> Ribosomal_L32p  Ribosomal L32p protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   8.6   1.3e-26   1.1e-22       1      55 [.       2      57 ..       2      58 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 1.3e-26
                    S--SS---HHHHHHHGGGT------EEEETT.TCCEECTTC-BTTTTBSSSBXSXX CS
  Ribosomal_L32p  1 AVPKrKtSksrrrkRrahwklkapnlvecpn.cgelklpHrvcpscGyYkgrevie 55
                    AVPKrK+S+s++r+Rra+wk+ +p+l+ cp   +e+ +pHr+c +cG Ykgr+v+e
      KIR61657.1  2 AVPKRKMSRSNTRHRRAQWKAAVPQLTPCPCpRKEMVVPHRACAHCGLYKGRQVVE 57
                    9*****************************9677********************97 PP

>> FeThRed_B  Ferredoxin thioredoxin reductase catalytic beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3   5.7e-06     0.051      62      86 ..      27      51 ..       6      58 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.7e-06
                TTBSS-HHHHHH....---TTSSSB CS
   FeThRed_B 62 vwnCPCvplreeldeekeChCglfv 86
                +  CPC   +  ++++   hCgl+ 
  KIR61657.1 27 LTPCPCPRKEMVVPHRACAHCGLYK 51
                335***7666666666666****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 454.10
//
Query:       KIR61658.1  [L=408]
Description: cobalamin biosynthesis protein P47K [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-54  182.9   0.1    5.1e-54  182.5   0.1    1.1  1  cobW         CobW/HypB/UreG, nucleotide-binding domain
    1.9e-23   82.2   0.0    5.2e-23   80.8   0.0    1.8  1  CobW_C       Cobalamin synthesis protein cobW C-terminal doma
     0.0024   16.9   3.4       0.47    9.4   0.2    2.6  2  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
  ------ inclusion threshold ------
      0.013   15.4   0.1       0.22   11.4   0.1    2.2  2  RsgA_GTPase  RsgA GTPase
      0.026   14.6   0.0       0.19   11.8   0.0    2.1  1  MMR_HSR1     50S ribosome-binding GTPase
      0.072   13.5   0.2        0.2   12.0   0.1    1.8  1  AAA_16       AAA ATPase domain
       0.15   12.0   0.0       0.27   11.1   0.0    1.4  1  MobB         Molybdopterin guanine dinucleotide synthesis pro


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.5   0.1     2e-57   5.1e-54       1     175 [.       6     209 ..       6     211 .. 0.92

  Alignments for each domain:
  == domain 1  score: 182.5 bits;  conditional E-value: 2e-57
                 EEEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SSCHCCCCCCHCCCT.......EEEETTTTECCHCTT-HHHHHHHHHHHHTT-SEEEEEECTT CS
        cobW   1 pvtvltGflGsGKTtLlnhllenraglklavivNefgevsiDaellretgve......ivelenGciCctlredllkelealeereerldviliEttGl 93 
                 pvtvl+GflG+GKT+Llnh+l+nr+gl++avivN+++ev++Da+l+r  g+       +vel+nGciCctlr+dll+e+++l+++  r+d++liE++G+
  KIR61658.1   6 PVTVLSGFLGAGKTSLLNHVLANRDGLRVAVIVNDMSEVNVDAALVRGGGALsrtqerLVELTNGCICCTLRDDLLAEVARLARQG-RFDYLLIESSGI 103
                 79********************************************555444445555***************************9.9*********** PP

                 TTHHHH..HTT.....SHHHHHCCCECEEEEEEETTTH...................CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHHHH CS
        cobW  94 aePapv..aft.....eeelksdltldavvavvDaknl..................eaeeekieekaedqlaaadllvlnKtDlldeeallekleerlr 167
                 +eP+pv  +f       + l + ++ld++v+vvD + l                  e +++ i++++ dq+++ad+lv+nKtDl+ +e+l  + e+ l+
  KIR61658.1 104 SEPMPVaaTFAfgvegGQVLDDLARLDTTVTVVDTAGLlamieageslearglaayEGDDRGIADLLVDQIEFADVLVVNKTDLVGAEDL-VVAEALLT 201
                 ******76555889988999999************888*****************99999****************************65.89999999 PP

                 HHHTTS-E CS
        cobW 168 qlnpeakv 175
                 +lnp+a+ 
  KIR61658.1 202 RLNPAARQ 209
                 99999875 PP

>> CobW_C  Cobalamin synthesis protein cobW C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0     2e-26   5.2e-23       1      94 []     256     371 ..     256     371 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 2e-26
      CobW_C   1 issfvfrarrpfdperleellee.elpegilRaKGivwlagkpd.alvlqgvggrlrlepagawwaa....................ededrrseLVfI 77 
                 iss+vfr++rpf+p+rl++ll+    + g++R+KG++wla++p    +++++g++ r++p g +  a                     ++dr++eLV+I
  KIR61658.1 256 ISSIVFRDHRPFHPQRLWDLLAGgVDGYGVVRSKGFLWLASRPGvQALWSQAGPTGRCDPVGVPVVAsgewpqdpderaelesrwhpVFGDRQQELVLI 354
                 79*********************9999************************************999999****************************** PP

      CobW_C  78 GrdldkealeeaLdacl 94 
                 G +ld + l++aL+acl
  KIR61658.1 355 GVHLDGDGLRAALAACL 371
                 ****************7 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.2   0.00018      0.47      26      69 ..       2      43 ..       1      71 [. 0.77
   2 !    7.8   0.3   0.00057       1.5     166     184 ..     174     192 ..     131     212 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00018
                -S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE---- CS
        MeaB 26 aGraqvvGltGvPGaGkstlvealglelrrrGkrvavlavDPss 69
                +Gr  v  l G+ GaGk  l++++ ++  r G rvav+  D s 
  KIR61658.1  2 TGRLPVTVLSGFLGAGKTSLLNHVLAN--RDGLRVAVIVNDMSE 43
                788889999*************99775..99******9766553 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00057
                 HHH-SEEEEE---HHHHHH CS
        MeaB 166 leiaDiivvnkaDkkeaek 184
                 +e aD++vvnk+D+ +ae 
  KIR61658.1 174 IEFADVLVVNKTDLVGAED 192
                 89***********998875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   8.7e-05      0.22     101     130 ..       7      37 ..       3      72 .. 0.82
   2 ?    1.5   0.0     0.096   2.5e+02      48      68 ..     177     196 ..     164     217 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.7e-05
                  EEEEECSTTSSHHHHHHHHCT.T-----S-- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallp.elelktgev 130
                  ++vl G  G+GK++L+n++l  ++ l+++ +
   KIR61658.1   7 VTVLSGFLGAGKTSLLNHVLAnRDGLRVAVI 37 
                  799**************98872445565554 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.096
                  EEEEEEE-GGG--HHH..HHHHH CS
  RsgA_GTPase  48 epvivlnKiDlleeee..eleel 68 
                    v+v+nK+Dl+  e+       
   KIR61658.1 177 ADVLVVNKTDLVGAEDlvV---A 196
                  5689********9998432...3 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.3e-05      0.19       3      69 ..       9     158 ..       7     205 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.3e-05
                 EEEESTTSSHHHHHHHHHTS......TEEESSSTTSSSSEEEEEEE..ETTEE.............................................. CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge......kaivsdkpgtTrdinegrvk..lkgke.............................................. 47 
                 ++ G   +GK++L+n  + +      ++iv+d+  +  d    r    l   +                                              
  KIR61658.1   9 VLSGFLGAGKTSLLNHVLANrdglrvAVIVNDMSEVNVDAALVRGGgaL---Srtqerlveltngcicctlrddllaevarlarqgrfdylliessgis 104
                 5678999********9986434443456888888888888777655332...13346788888889999999999999999999999999999999999 PP

                 ............................EEEEECGGCS...S.HHHHHHHHHHH CS
    MMR_HSR1  48 ............................ielvDtpGli...e.gaseekglgka 69 
                                             +++vDt+Gl+   e g+s e +   a
  KIR61658.1 105 epmpvaatfafgveggqvlddlarldttVTVVDTAGLLamiEaGESLEARGLAA 158
                 9999999999999999999999999999********853222333333322223 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   7.8e-05       0.2      21      52 ..       2      31 ..       1      64 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.8e-05
      AAA_16 21 sgrpelvllsGesGvGKsslvrellralekdg 52
                +gr ++++lsG  G GK+sl++++l   ++dg
  KIR61658.1  2 TGRLPVTVLSGFLGAGKTSLLNHVLA--NRDG 31
                5778999*****************95..5553 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011      0.27       4      44 ..      10      48 ..       7      50 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
        MobB  4 ivgksgsGKTtLleklipelkarglrvgtiKhahhgfdvdk 44
                + g+ g+GKT+Ll+++++  ++ glrv++i  +  +++vd 
  KIR61658.1 10 LSGFLGAGKTSLLNHVLA--NRDGLRVAVIVNDMSEVNVDA 48
                67999**********987..699********9999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.35s 00:00:01.06 Elapsed: 00:00:00.59
# Mc/sec: 2095.54
//
Query:       KIR61659.1  [L=86]
Description: 50S ribosomal protein L31 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-29  101.1   0.0    3.3e-29  100.9   0.0    1.0  1  Ribosomal_L31  Ribosomal protein L31


Domain annotation for each model (and alignments):
>> Ribosomal_L31  Ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.0   1.8e-33   3.3e-29       1      67 []       1      79 [.       1      79 [. 0.99

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 1.8e-33
  Ribosomal_L31  1 mKkgiHPeyrevvvkca.cgeefltrStl...........kekpeikvdvcsksHPfYtGkqklvdtaGrvekFkkryg 67
                   mK+giHPeyr+vv +++ ++  fltrSt+           +++p+i+v+++s+sHPf+tG+q+l+dtaGrvekF+++y+
     KIR61659.1  1 MKPGIHPEYRPVVYRDRgADFAFLTRSTAtsdqtiewsdgNTYPVIDVQISSASHPFWTGRQRLLDTAGRVEKFRQKYA 79
                   9*****************************************************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 588.69
//
Query:       KIR61660.1  [L=437]
Description: cobalamin biosynthesis protein CobW [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-24   85.2   0.3    4.8e-23   80.9   0.1    2.9  2  CobW_C    Cobalamin synthesis protein cobW C-terminal domain
      3e-11   43.2   0.0    4.5e-11   42.6   0.0    1.2  1  cobW      CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> CobW_C  Cobalamin synthesis protein cobW C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.11   9.4e+02       7      32 ..     199     225 ..     161     232 .. 0.85
   2 !   80.9   0.1   5.3e-27   4.8e-23       2      94 .]     274     389 ..     273     389 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.11
      CobW_C   7 rarrpfdperleellee.elpegilRa 32 
                 +++++fd +rl  ll++ + ++  lR+
  KIR61660.1 199 SREGAFDTSRLSVLLRRmAPWAAHLRV 225
                 467889999999999987777777776 PP

  == domain 2  score: 80.9 bits;  conditional E-value: 5.3e-27
      CobW_C   2 ssfvfrarrpfdperleelleeelpegilRaKGivwlagkpd.alvlqgvggrlrlepagawwaa.......................ededrrseLVf 76 
                  s vfrarrpf+p+rl+++le+  +++i+R++G++wla++pd +++++++gg l +++ g+w  +                        ++dr+++LVf
  KIR61660.1 274 VSAVFRARRPFHPQRLHDVLED-VNAEIIRSRGHLWLASQPDtVVAWEFAGGGLAMGSLGHWLVSlpedrwehvddqrriaaaldwdpYYGDRHQHLVF 371
                 799*******************.****************************************99********************************** PP

      CobW_C  77 IGrdldkealeeaLdacl 94 
                 IG d+d+  l+++L+ cl
  KIR61660.1 372 IGVDIDPVDLHRTLAGCL 389
                 *****************7 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   5.1e-15   4.5e-11      41     147 ..      68     195 ..      52     218 .. 0.83

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 5.1e-15
                 CCCCCCHCCCT.EEEETTTTECCHCTT-HHHHHHHHHHHHTT-SEE.....EEEECTTTTHHHH.HTTSHHHHHCCCECEEEEEEETTTH......... CS
        cobW  41 iDaellretgveivelenGciCctlredllkelealeereerldvi.....liEttGlaePapv.afteeelksdltldavvavvDaknl......... 124
                  Da +++++    ++l  Gci ctlred+l+++++l++++   d++     ++E   +a++    ++    +++ +++d+ v+v+Da++l         
  KIR61660.1  68 SDAGIVEDE---QITLRHGCISCTLREDVLPTIARLARTRPGRDLVlmlpeVVEPEAVAAACAHcLVDGAPITDLVRVDSYVTVLDAEHLldglasted 163
                 566666666...699*************************55555512222244444333333323559****************************** PP

                 ..........CCHCCHHHHHHHHHHTSSEEEE CS
        cobW 125 .........eaeeekieekaedqlaaadllvl 147
                          e++++  ++ + +q+++ad+lvl
  KIR61660.1 164 lralgiqaaEDDHRALADVVVRQIEYADTLVL 195
                 *******99999999***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3181.36
//
Query:       KIR61661.1  [L=78]
Description: 50S ribosomal protein L28 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-25   89.2   1.1    1.7e-25   88.9   1.1    1.1  1  Ribosomal_L28  Ribosomal L28 family


Domain annotation for each model (and alignments):
>> Ribosomal_L28  Ribosomal L28 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   1.1   9.7e-30   1.7e-25       1      60 []       3      62 ..       3      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 9.7e-30
                   ---TTT------------S-..-SSS-BTTEEEEEEEE.TTTEEEEEEEEHHHHHH--.. CS
  Ribosomal_L28  1 rvCeltGkkpqfGnnvshsknkTkRtwkPNlqkvrlwseelgrkvrikvstkcLRtidkk 60
                   r+C++tG kp fGn vshs+++T+R+w+PNlq +r+w++++ r++++++++++LRt+d+k
     KIR61661.1  3 RRCDVTGAKPSFGNAVSHSHRRTRRRWNPNLQHHRYWLPSERRWISLTLTARALRTVDRK 62
                   89*******************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 598.61
//
Query:       KIR61662.1  [L=55]
Description: 50S ribosomal protein L33 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-16   60.2   0.0    2.1e-16   60.1   0.0    1.1  1  Ribosomal_L33  Ribosomal protein L33


Domain annotation for each model (and alignments):
>> Ribosomal_L33  Ribosomal protein L33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   1.2e-20   2.1e-16       2      47 .]      10      55 .]       9      55 .] 0.93

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 1.2e-20
                   EEEEEET......EEEEETT..--S--EEEEEETTTTEEEEEEEE- CS
  Ribosomal_L33  2 kvtLeCtecksrnYtttknkkntperLelkKYcprcrkhtlhkEtK 47
                   +v+L++t     +Y+t+kn++n p+rL l+KY+p++r+h+ ++E++
     KIR61662.1 10 IVRLRSTAGTGYTYVTRKNRRNDPDRLVLRKYDPVVRRHVEFREAR 55
                   79*****777777*******************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 439.68
//
Query:       KIR61663.1  [L=101]
Description: 30S ribosomal protein S14 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-24   84.2   0.6    6.8e-24   83.4   0.6    1.4  1  Ribosomal_S14  Ribosomal protein S14p/S29e


Domain annotation for each model (and alignments):
>> Ribosomal_S14  Ribosomal protein S14p/S29e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.6   3.8e-28   6.8e-24       2      54 .]      48     100 ..      47     100 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 3.8e-28
                    ------SS..CTTT---SSS--SSSEE-GGG-EHHHHHHHTTT...TT-EE-- CS
  Ribosomal_S14   2 laklprnssptrirnrCrvtGrprGvirkfgLsRicfRelAlkgelpGvkKaS 54 
                    l++lpr+ssp+r+r r++++GrprGv+ +fgLsR++fRelAl+gelpGv+KaS
     KIR61663.1  48 LSRLPRDSSPVRLRSRDQIDGRPRGVLTRFGLSRVRFRELALRGELPGVRKAS 100
                    789*************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 788.23
//
Query:       KIR61664.1  [L=278]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-16   59.8   0.0    5.1e-16   59.2   0.0    1.3  1  Methyltransf_25  Methyltransferase domain
    1.1e-14   54.8   0.1    1.7e-14   54.2   0.1    1.3  1  Methyltransf_11  Methyltransferase domain
    4.4e-11   43.4   0.0    6.3e-11   42.9   0.0    1.2  1  Methyltransf_12  Methyltransferase domain
    2.2e-08   34.0   0.0    2.8e-08   33.7   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    5.6e-08   32.8   0.0    8.2e-08   32.2   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    3.6e-06   26.5   0.0      5e-06   26.0   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0016   18.0   0.0      0.003   17.1   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0027   17.5   0.0     0.0039   17.0   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0057   15.7   0.0     0.0078   15.2   0.0    1.1  1  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
  ------ inclusion threshold ------
       0.14   11.7   0.0       0.25   10.8   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
       0.18   11.7   0.1        1.3    8.9   0.1    2.3  2  HTH_25           Helix-turn-helix domain
       0.18   11.1   0.0       0.22   10.8   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   3.4e-19   5.1e-16       2      97 .]      47     138 ..      46     138 .. 0.91

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 3.4e-19
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      Ld+GcG+G++t  la  +  a+ +gvD++++ml++ar ra+++g+ n+++v++ aedlp   g f +vv ++++h++    ++++ + ++ +L 
       KIR61664.1  47 LDVGCGPGTVTVPLAGCF--AEAVGVDPDAGMLARARLRAARDGVdNLQWVRARAEDLPAGLGVFRVVVFAQSFHWTV---QDTVAAAVRGMLP 135
                      9**************999..**************************************************88899854...3467778888888 PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       KIR61664.1 136 PGG 138
                      887 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.1   1.2e-17   1.7e-14       1      95 [.      47     141 ..      47     142 .. 0.95

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 1.2e-17
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGl 93 
                      LdvGcG G ++ +la  +a+ vgvD+++ ml++a+ +a ++g+ ++++v+a+ae+lp   + f +vv  +++h+   ++ + + ++ +L pgG 
       KIR61664.1  47 LDVGCGPGTVTVPLAGCFAEAVGVDPDAGMLARARLRAARDGVdNLQWVRARAEDLPAGLGVFRVVVFAQSFHWT-VQDTVAAAVRGMLPPGGA 139
                      8**************666********************************************************9.58999999999******9 PP

                      EE CS
  Methyltransf_11  94 lv 95 
                      +v
       KIR61664.1 140 FV 141
                      87 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   4.2e-14   6.3e-11       1      98 [.      47     139 ..      47     140 .. 0.93

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 4.2e-14
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++GcG G+++ +l+    ++e +gvD+++ ++++a+ + a+ + +n ++v+ +a+dl    g   f +vv ++ +h++   + v + +r +L 
       KIR61664.1  47 LDVGCGPGTVTVPLAGC--FAEAVGVDPDAGMLARARLRAARDGVDNLQWVRARAEDLPAGLG--VFRVVVFAQSFHWT-VQDTVAAAVRGMLP 135
                      8****************..**************************999999999999987776..9************6.777888999***** PP

  Methyltransf_12  95 pgGr 98 
                      pgG 
       KIR61664.1 136 PGGA 139
                      **96 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.9e-11   2.8e-08       4     107 ..      43     140 ..      40     159 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.9e-11
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileei 97 
                        r+lD+GCG G+ t  la   g  ae vG+D ++ ++ +Ar +a++ g+dn++  ++ +e+l+       f +++  + + + + +d +   +
       KIR61664.1  43 SGRLLDVGCGPGTVTVPLA---GCFAEAVGVDPDAGMLARARLRAARDGVDNLQWVRARAEDLP--AGLGVFRVVVFAQSF-HWTVQDTVAAAV 130
                      5689***************...44599*************************************..566678888877776.444455555555 PP

  Methyltransf_31  98 ervlkpggil 107
                         l pgg++
       KIR61664.1 131 RGMLPPGGAF 140
                      5555555555 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   5.5e-11   8.2e-08      13     128 ..      31     153 ..      17     185 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 5.5e-11
  Methyltransf_23  13 lerllpk..lraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae......kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdp 98 
                      ++ l+++  l+ +gr+Ld+GcG G+++  l+ ++++ +gvD++  + ++a+      + ++ q + +++++ +   g f ++v  +++++    
       KIR61664.1  31 VAALADElgLDGSGRLLDVGCGPGTVTVPLAGCFAEAVGVDPDAGMLARARlraardGVDNLQWVRARAEDLPAGLGVFRVVVFAQSFHWTVQ- 123
                      45555444478899************************************999998877777777777788888888***********98664. PP

  Methyltransf_23  99 pellrqiatllkpgGylllseplaslkedr 128
                        + + ++ +l pgG +++    ++l++++
       KIR61664.1 124 DTVAAAVRGMLPPGGAFVHVAEVKELPSAE 153
                      366678888999999988877666663333 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   3.4e-09     5e-06      50     151 ..      45     142 ..      31     157 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 3.4e-09
                      EEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHE CS
  Ubie_methyltran  50 kvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvl 143
                      ++lDv +G g +++ l+       + v++D ++ mL  ++ ++ ++g+ n++++ a ae+Lp   + f vv  +  +   t ++++   ++ +l
       KIR61664.1  45 RLLDVGCGPGTVTVPLAGCFA---EAVGVDPDAGMLARARLRAARDGVDNLQWVRARAEDLPAGLGVFRVVVFAQSFH-WTVQDTVAAAVRGML 134
                      79************9987655...67899***************************************9998887775.455677778888899 PP

                      EEEEEEEE CS
  Ubie_methyltran 144 kpGGrlvv 151
                       pGG++v 
       KIR61664.1 135 PPGGAFVH 142
                      99998764 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     2e-06     0.003      23     138 ..      34     143 ..      19     157 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2e-06
                 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC....EEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHH CS
         MTS  23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle....vevvasdvleeveekkfdlivsNPPfhagkatelav 117
                 L++ l  + sg++lD+GcG G +++ la    e   + vd da  l+ a+  +++ +++    v+++a+d+ + +    f ++v    fh   +     
  KIR61664.1  34 LADELGLDGSGRLLDVGCGPGTVTVPLAGCFAE--AVGVDPDAGMLARARLRAARDGVDnlqwVRARAEDLPAGLG--VFRVVVFAQSFHWTVQ----- 123
                 666777778999*****************9988..799***************99999988788888888888877..7888887777776665..... PP

                 HHHHHHHHHHHEEEEEEEEEE CS
         MTS 118 aeeliaeAkeaLkegGeLliV 138
                  +++ a+ + +L +gG ++ V
  KIR61664.1 124 -DTVAAAVRGMLPPGGAFVHV 143
                 .23333334455555555555 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.6e-06    0.0039      61     129 ..      30      95 ..      11     101 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.6e-06
                 HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEE CS
        PCMT  61 mvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivv 129
                  va++ + l l+   r L+vG+G G  t+ la  + e    v+++  + + ++a+ +  +++++n++ v
  KIR61664.1  30 FVAALADELGLDGSGRLLDVGCGPGTVTVPLAGCFAEA---VGVDPDAGMLARARLRAARDGVDNLQWV 95 
                 6788899999*******************999999876...5*********************999866 PP

>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   5.2e-06    0.0078     202     263 ..      43     104 ..      33     114 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.2e-06
  tRNA_U5-meth_tr 202 kgdllelycGnGnfslalarnfekvlateiakssveaaqyniaankidnvqiirlsaeelte 263
                      +g ll++ cG G  +++la  f   +  +     ++ a+   a + +dn+q +r  ae+l  
       KIR61664.1  43 SGRLLDVGCGPGTVTVPLAGCFAEAVGVDPDAGMLARARLRAARDGVDNLQWVRARAEDLPA 104
                      5789******************************************************9865 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00017      0.25       5      60 ..      46      99 ..      44     109 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
                    EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-C CS
  Methyltransf_4  5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgda 60
                    +l++GcG G+++v lA  +++   +G++    ++a++  +++++++ Nl+ +r  a
      KIR61664.1 46 LLDVGCGPGTVTVPLAGCFAE--AVGVDPDAGMLARARLRAARDGVDNLQWVRARA 99
                    68***************9997..69*************************999877 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00089       1.3      42      59 ..      25      42 ..      16      44 .. 0.89
   2 ?   -0.7   0.0      0.91   1.4e+03      51      60 ..      64      73 ..      53      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00089
                HHHHHHHHHHHHHTT--H CS
      HTH_25 42 vylrgylrnYArlLgldp 59
                +y+ g++ ++A+ Lgld+
  KIR61664.1 25 PYAAGFVAALADELGLDG 42
                6****************8 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.91
                HHHHTT--HH CS
      HTH_25 51 YArlLgldpe 60
                +A+++g+dp+
  KIR61664.1 64 FAEAVGVDPD 73
                79******98 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.22      54      83 ..      34      63 ..      28     147 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
                HHTTTT--TT-EEEEES-TTSHHHHHHHHH CS
        CMAS 54 ileklelkpGmtlLdiGcGWGslvrraver 83
                + + l+l+   +lLd+GcG G++++  +  
  KIR61664.1 34 LADELGLDGSGRLLDVGCGPGTVTVPLAGC 63
                568999*9999**********998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2030.58
//
Query:       KIR61665.1  [L=368]
Description: ionic transporter y4hA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-27   94.6  35.6    6.2e-14   52.2  11.2    2.3  2  Na_Ca_ex  Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2  11.2   3.4e-18   6.2e-14       3     150 ..      36     188 ..      34     189 .. 0.85
   2 !   48.3  16.4   5.7e-17     1e-12       2     149 ..     224     365 ..     223     366 .. 0.89

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 3.4e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT...HHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCE CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltge...vdlaignvlGsnifnlllviGlialigslkvdses 98 
                 +v++++ +l+++vla   v +ae++a   +  g+++G ++lA +++++E++++++ +++g    v+la+++v++++++ +++++Gl++l+++l ++   
  KIR61665.1  36 VVGVVATFLAGAVLA--AVHHAEVVA---HKVGEPFGSLVLAVAVTVIEVALIVTLMISGGdktVSLARDTVFAAVMITCNGILGLSLLLAALRRRVAV 129
                 667777777776666..48999****...9*****************************87789**************************885555555 PP

                 CCHHH.HHHHHHHHHHHHHHHHTCHHHHH........HTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  99 lkldl.gllllvallllllvlllllplfv........pgrltvleglvllllYalylvlsl 150
                   ++  g    +a +++l++l l++p+f+        +  + v+ +++ l+lY+l++++++
  KIR61665.1 130 --FNPeGTGGALATVATLATLSLVVPTFTtsrpgpefSPPQLVFAAVASLALYGLFVLVQT 188
                 ..555555555555555667777999999********99999****************997 PP

  == domain 2  score: 48.3 bits;  conditional E-value: 5.7e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECC CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslk 100
                 ++++++++l++++ la+++++++e+ ++  +++++++G+ ++Al + lpE++++  aa+++ v+++++ +lGs+++ ++l+i+ ia+ +    d+    
  KIR61665.1 224 SLIMLLVALIAVVGLAKMVSPAIEAGVSAANLPQAFVGV-VIALLVLLPETLAAARAARRDRVQISLNLALGSAMASIGLTIPAIAIASI-WLDGPL-L 319
                 6799***********************99**********.************************************************66.677655.5 PP

                 HHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 101 ldlgllllvallllllvlllllplfvpgrltvleglvllllYalylvls 149
                 l lg+++l++l+l++++ +l+    vpgr t+l+g v+l+l a++++l+
  KIR61665.1 320 LGLGGTQLTLLALTVVTGVLT---VVPGRATLLQGGVHLVLLAAFVFLA 365
                 888666666666666565555...458******************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2610.07
//
Query:       KIR61666.1  [L=249]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-18   65.1   0.9    3.8e-16   59.4   0.9    2.2  1  Zn_peptidase  Putative neutral zinc metallopeptidase
  ------ inclusion threshold ------
       0.18   11.0   0.0       0.28   10.4   0.0    1.2  1  Peptidase_M9  Collagenase


Domain annotation for each model (and alignments):
>> Zn_peptidase  Putative neutral zinc metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.9   4.3e-20   3.8e-16      55     287 ..      36     246 ..       3     248 .. 0.72

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 4.3e-20
  Zn_peptidase  55 lsallglgqesstaeaaaqssegtaeeaedeqkefvsvvladtedtWtqifkekgktyqkpk.lvlfsrvvrsaC.GtassatGPfyCPadrkvyld 149
                   +++ l   ++ ++++ + +++++  + +  e +e ++v + ++e +Wt +f+ +g+++q  + +v ++r  + +C G+a       yC a   +  d
    KIR61666.1  36 PQQPLP-RSTRQPSSPQGEQTRADGTTSVAEFQEDMAVAVDKAEIYWTAQFRASGRRFQPVRrVVPYQREGEVSCaGQALPRNNAVYCSAGDFIAYD 131
                   222222.22222332333333344444455666667788999*****************9752677*9999988879999**************99* PP

  Zn_peptidase 150 lsffdelkqklgaaGdfaaayviahevGhhvqnllGilekveqarqgaseaeanqlsvrleLqadcfaGvW.ansvqqkg.llekgdieealnaaka 244
                   + +       +   Gd+   y + he  h +q  lGi ++               +++++eLqadc+aG++ + s+++ +  le+gd++e  +   a
    KIR61666.1 132 VRWSVA---AFRQVGDAFLYYLLGHEYAHGIQVRLGIRAQ---------------FTIQQELQADCMAGAYiGGSIEAGHlRLEDGDLDEFREGLLA 210
                   *98654...56677999********************865...............57889*********9843344444437*************** PP

  Zn_peptidase 245 iGddtLqkqsqgrvvPdsfthGtsqqrqrWfkrGfesGdlaqc 287
                   +Gdd  q            +hGt++qr+  f rG+e+G  a c
    KIR61666.1 211 VGDDPDQPWF------AEGAHGTAEQRTDHFFRGYEQGL-AAC 246
                   ****877543......3458*****************94.445 PP

>> Peptidase_M9  Collagenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   3.1e-05      0.28     129     183 ..     111     172 ..     105     180 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.1e-05
  Peptidase_M9 129 GiylegdPadagnqarfiayeateeeeef.......siynLeHEytHyLdgrydvegdfaks 183
                   G+ l ++ a     + fiay+  ++  +f         y L HEy H ++ r  ++++f+ +
    KIR61666.1 111 GQALPRNNAVYCSAGDFIAYDVRWSVAAFrqvgdafLYYLLGHEYAHGIQVRLGIRAQFTIQ 172
                   6677777777888899****9999876664333221557788***********999999843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1846.89
//
Query:       KIR61667.1  [L=217]
Description: HAD family hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-26   94.1   0.0    1.2e-26   93.9   0.0    1.0  1  HAD_2           Haloacid dehalogenase-like hydrolase
    2.6e-22   80.1   0.1      2e-21   77.3   0.1    1.9  1  Hydrolase       haloacid dehalogenase-like hydrolase
    5.3e-17   62.8   0.1    6.4e-17   62.6   0.1    1.1  1  HAD             haloacid dehalogenase-like hydrolase
      1e-06   28.7   0.3    1.4e-05   25.0   0.0    2.7  3  Hydrolase_like  HAD-hyrolase-like
     0.0003   20.8   0.0       0.33   11.1   0.0    2.3  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0   3.2e-30   1.2e-26       2     178 .]       2     180 ..       1     180 [. 0.92

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 3.2e-30
       HAD_2   2 iFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee.kieellrkyneekkk...kevkpydgvkelLeeLkeagy 96 
                 +FD+DgTl+d+e+l+  a++el++eyg  +ls+   + lig s+ +++r l ++  +   + +    ++ ++  +   + ++  +g+  lL  +++ag+
  KIR61667.1   2 LFDMDGTLVDSEKLWDVALRELAAEYGA-TLSDAGRKALIGTSMADAMRILHDDLGQPYrDPQVSAAWIDARILElfrTGLRWRPGALALLRAVRAAGI 99 
                 9*************************88.9*******************999988866675555555555554444449******************** PP

       HAD_2  97 klgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikviav 178
                   ++vTs+ r  ve  l+ lg  + Fd +v++++v   KP+pe++++a + l++  ++++ ++Dspt++ +a +ag  v+av
  KIR61667.1 100 PTALVTSSGRPLVEVALDTLG-RDSFDAVVCGDEVDAAKPHPEPYLTAARLLGVPIARCVAIEDSPTGVASALAAGAAVLAV 180
                 *********************.899****************************************************99987 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.1   5.6e-25     2e-21       5     210 .]       2     174 ..       1     174 [. 0.84

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 5.6e-25
                 EEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   5 vfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtvall 103
                 +fD+dGTL+++e+    +++++                       a + +  l++ ++     +++ig   + +a+      ++  + + +   ++a+ 
  KIR61667.1   2 LFDMDGTLVDSEKLWDVALREL-----------------------AAEYGATLSDAGR-----KALIGTS-MADAM--RILHDDLGQPYRDPQVSAAWI 69 
                 7***********7777777777.......................3333444455555.....5555554.23333..122445677788888999999 PP

                 TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvnD 202
                 +ar+l++f        +p+a  ++++ +aagi+++l+t++ +  +e a++ lG+d fdav+++d++  akp+pe ++ a+r L+++++++++++D++++
  KIR61667.1  70 DARILELFRTGLR--WRPGALALLRAVRAAGIPTALVTSSGRPLVEVALDTLGRDSFDAVVCGDEVDAAKPHPEPYLTAARLLGVPIARCVAIEDSPTG 166
                 9999999999988..***********************************************************************************9 PP

                 HHHHHHTT CS
                 xxxxxxxx RF
   Hydrolase 203 aaalaaAg 210
                 +a + aAg
  KIR61667.1 167 VASALAAG 174
                 99999987 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.1   1.8e-20   6.4e-17       2     140 ..       2     146 ..       1     190 [. 0.83

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 1.8e-20
         HAD   2 lfDfDgTLldgdslelllrfllrrgaprlwralreklllalfrellrldraglaelleallagls..eelaaelerfvaevirpkl.ldpgalellaah 97 
                 lfD+DgTL+d++    l+++ lr+ a + +++l  + ++al   +++++ ++ + l + l ++++  +  aa++++ + e  r+ l ++pgal+ll+a+
  KIR61667.1   2 LFDMDGTLVDSE---KLWDVALRELAAEYGATLSDAGRKAL---IGTSMADAMRILHDDLGQPYRdpQVSAAWIDARILELFRTGLrWRPGALALLRAV 94 
                 8**********5...77887888888888999999999999...*******************99856677888888877777775699********** PP

         HAD  98 raaGdrvvvvSgglrplvepllaelg...adevlat.elevdd.....rltg 140
                 raaG+++++v+++ rplve  l+ lg   +d+v++  e++  +     +lt+
  KIR61667.1  95 RAAGIPTALVTSSGRPLVEVALDTLGrdsFDAVVCGdEVDAAKphpepYLTA 146
                 ***********************************95555544655554444 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.45   1.6e+03      39      50 ..      95     106 ..      91     109 .. 0.84
   2 ?   -0.0   0.0      0.26   9.3e+02       8      32 ..     110     134 ..     107     136 .. 0.86
   3 !   25.0   0.0     4e-09   1.4e-05       3      48 ..     136     180 ..     134     197 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.45
                     HHCT-EEEEESS CS
  Hydrolase_like  39 nnaGwksvLVlt 50 
                     ++aG+ ++LV++
      KIR61667.1  95 RAAGIPTALVTS 106
                     789*******87 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.26
                     HHHHHHHHHH---GGGEEEEES-TT CS
  Hydrolase_like   8 emydfalevlgsdpeevlmiGDrla 32 
                     ++++ al  lg d+ + ++ GD ++
      KIR61667.1 110 PLVEVALDTLGRDSFDAVVCGDEVD 134
                     678899999****99*******865 PP

  == domain 3  score: 25.0 bits;  conditional E-value: 4e-09
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEE CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLV 48 
                      KP+pe y  a++ lg++ +++++i D+  t +a+A +aG+  ++V
      KIR61667.1 136 AKPHPEPYLTAARLLGVPIARCVAIEDS-PTGVASALAAGAAVLAV 180
                     6***************************.************99988 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0011         4       2      20 ..       2      20 ..       1      45 [. 0.84
   2 !   11.1   0.0   9.3e-05      0.33      15      43 ..      83     111 ..      76     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0011
                 EEESTTTSEETTEE-TTHH CS
  Hydrolase_6  2 lfDidGvLwrgdkaipgaa 20
                 lfD+dG+L++ +k+ + a 
   KIR61667.1  2 LFDMDGTLVDSEKLWDVAL 20
                 8*********999877665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 9.3e-05
                  E-TTHHHHHHHHHHTT-EEEEEE---SS- CS
  Hydrolase_6  15 aipgaaealnalraagkpvvllTNnssks 43 
                    pga  +l+a+raag+p++l+T +++  
   KIR61667.1  83 WRPGALALLRAVRAAGIPTALVTSSGRPL 111
                  569********************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1570.74
//
Query:       KIR61668.1  [L=392]
Description: chemotaxis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-37  127.9  63.7    1.1e-33  116.6  48.9    2.0  2  MFS_1     Major Facilitator Superfamily
    1.3e-06   28.0  48.9    1.5e-06   27.7  48.9    1.0  1  MFS_4     Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
        9.3    5.0  32.4       0.77    8.6  14.6    2.7  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6  48.9   1.9e-37   1.1e-33       2     326 ..       9     315 ..       8     324 .. 0.79
   2 !   17.6   6.8   2.4e-07    0.0014     124     179 ..     327     381 ..     316     391 .. 0.80

  Alignments for each domain:
  == domain 1  score: 116.6 bits;  conditional E-value: 1.9e-37
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                  la+f  +++ ++l+ ++p  +a dl +s+ ++g+l++++a+g++++++++++ls r+ rr+ ll+ l++f+++ +++++++s+ +ll+ rv+ +++ +
  KIR61668.1   9 GLAVFAQGTSEFMLAGLIP-DIAADLRVSVPAAGTLTSTFAAGMIIGAPLMAVLSLRWPRRWALLVFLTAFIAAHVVGAVTASFGVLLATRVVGAVANA 106
                 6899***************.******************************************************55555435655************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpa 199
                 +++++g+a ++ ++ +  +gra ++l +g+ l+ + g ++g++l  ++gWr++f+++a+vs+ a+v   +l  ++p++ + + p  +         ++ 
  KIR61668.1 107 GFLAVGLATAVGLAGPHAKGRAASVLLGGVTLACVAGVPAGAVLGNLWGWRSAFWAVAAVSVPAAVA--ILRSVPPTPLGAPVPDAR---------RE- 193
                 ****************************************************************775..666666666555544444.........45. PP

       MFS_1 200 wkallkdpvlwillialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt 297
                 ++al++++    l++a+l++++ f ++++l pl + +v g++ +++ a+  la+++l+++++  +agrlsd     r++ + ++++l++++g++l+a+t
  KIR61668.1 194 LRALRRPRLAVTLVLAALVNGATFCTFTYLAPL-ATDVSGYDrAWVPAL--LAVFCLGSFVGVTVAGRLSDT----RPMRILVPGGLALLAGWLLFAAT 285
                 777888883334666666666444446666666.7*******8777777..*******************97....46666666666666666666666 PP

       MFS_1 298 .ssavllllvlvliGfglgfvfpsllalas 326
                    a+++ll++++ G+ ++ v ++l++l+ 
  KIR61668.1 286 aAIAPVALLLVLVQGTLSFAVGATLITLVL 315
                 233444444444444444444555555543 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 2.4e-07
       MFS_1 124 gllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepper 179
                 ++++a+ ++Ga+ gpllgg+ + + lg+r++ ++ a++ +la+   + l+p+ +++ 
  KIR61668.1 327 SFATAALNVGAAAGPLLGGAAIgAGLGYRSPLWVSALLVALALT--VGLVPALRRRG 381
                 8999***************9999*******************55..34444443333 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7  48.9   2.6e-10   1.5e-06       3     361 ..      13     371 ..      11     373 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 2.6e-10
       MFS_4   3 valGiGRFsytpiLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvf 101
                  a G   F+++ ++P++ a++ +s+ +ag l +  ++G ++Ga l a+   + + R  ll+ l a  ++ +  a+t sf ++l+ R++  va A  l +
  KIR61668.1  13 FAQGTSEFMLAGLIPDIAADLRVSVPAAGTLTSTFAAGMIIGAPLMAVLSLRWPRRWALLVFLTAFIAAHVVGAVTASFGVLLATRVVGAVANAGFLAV 111
                 5778899************************************888899999999******************************************** PP

       MFS_4 102 gsslvlahaaaarrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalreasaaa.eaakaeqkslpllallla 199
                 g ++++  a ++ ++r  ++l +Gv l  +++ + + ++l   +++ s+ +a+a++s+ + ++++  +p ++l +   +a +  +a+++ + ++ l+la
  KIR61668.1 112 GLATAVGLAGPHAKGRAASVLLGGVTLACVAG-VPAGAVLGNLWGWRSAFWAVAAVSVPAAVAILRSVPPTPLGAPVPDArRELRALRRPRLAVTLVLA 209
                 ***************************87655.555555556666666777788888888888888888333333333220233456677777777777 PP

       MFS_4 200 YglaGfGYiitatFlvaiardg.aggalleallWllvGlaaivgvlvwlrvakrsglrralaaalliea.vgvllsllspsplglivssvllGltflai 296
                   ++G+ +  t t+l  +a d  +  +++  +l  ++ l+++vgv v  r+++ + +r ++   l++ a   ++++++  +p++l++ +++ G   +a+
  KIR61668.1 210 ALVNGATF-CTFTYLAPLATDVsGYDRAWVPALLAVFCLGSFVGVTVAGRLSDTRPMRILVPGGLALLAgWLLFAATAAIAPVALLL-VLVQGTLSFAV 306
                 77777776.689*********9777788888899********************999999988886654155566666677766665.67788888888 PP

       MFS_4 297 talvlqlarelappatrrllglmTasfgigQilGpllasllaeatgslalallvaaaalvlaali 361
                  a  ++l+   a++a+    +++Ta+  +g ++Gpll ++   a  ++ ++l v+a +++la+ +
  KIR61668.1 307 GATLITLVLYRAADAPSLGGSFATAALNVGAAAGPLLGGAAIGAGLGYRSPLWVSALLVALALTV 371
                 888888888889999999999*******************9999999*********999999865 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  14.6   0.00013      0.77      48     179 ..      40     165 ..      15     182 .. 0.72
   2 ?    1.5   9.8     0.018   1.1e+02      45     178 ..     235     367 ..     205     377 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00013
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqla 146
                  g ++s f +G iiG+ ++  l+ r+ R+++ll++ + f+++ v+ a++    s+ vl++ Rv+  ++  ++ ++   ++  +A ++  g+  s+   +
  KIR61668.1  40 AGTLTSTFAAGMIIGAPLMAVLSLRWPRRWALLVFLTAFIAAHVVGAVTA---SFGVLLATRVVGAVANAGFLAVGLATAVGLAGPHAKGRAASVLLGG 135
                 58899****************************************99999...9**********99876655555555555566555555555544433 PP

                 HHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHH CS
    Sugar_tr 147 itfGilvaaifglglnktsnadgwrillglqlv 179
                 +t+  + +   g++l +    +gwr  ++  ++
  KIR61668.1 136 VTLACVAGVPAGAVLGN---LWGWRSAFWAVAA 165
                 33333333333333322...2445555555544 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.018
                 ..HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.SS-TGGGGG.HHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHH CS
    Sugar_tr  45 svlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.nsvevlivg.RvlvGigvGlasvlvPmyisEiApkklRgalvs 141
                   ++ +++++f +G+++G  +ag l+d+  R   +l+ + l++ ++ l +aa+++   v +l+v  +  + ++vG++ ++  +y +  Ap    ++ + 
  KIR61668.1 235 RAWVPALLAVFCLGSFVGVTVAGRLSDT--RPMRILVPGGLALLAGWLLFAATAAiAPVALLLVLvQGTLSFAVGATLITLVLYRAADAPSLGGSFATA 331
                 467778999******************8..555566645555555555555554544444444434************************999999999 PP

                 HHHHHHHHHHHHH.HHHHHHHHTSS-TTHHHHHHHCCH CS
    Sugar_tr 142 lyqlaitfGilva.aifglglnktsnadgwrillglql 178
                   +++ ++G l++ a +g+gl + s    w   l ++l
  KIR61668.1 332 ALNVGAAAGPLLGgAAIGAGLGYRSP--LWVSALLVAL 367
                 99999999988752666777666655..3433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 3161.86
//
Query:       KIR61669.1  [L=852]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-25   88.6  17.4    3.8e-14   52.9   3.4    5.5  6  FtsX       FtsX-like permease family
    1.1e-24   87.9  21.5    3.2e-14   53.7   6.0    5.0  5  MacB_PCD   MacB-like periplasmic core domain


Domain annotation for each model (and alignments):
>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.3       1.9   1.7e+04      31      41 ..      21      31 ..      15      49 .. 0.49
   2 ?   -1.4   0.5      0.37   3.3e+03      62      83 ..     272     293 ..     252     298 .. 0.51
   3 !   50.3   6.2   2.7e-17   2.5e-13       2      96 .]     301     396 ..     300     396 .. 0.87
   4 ?    0.1   4.6      0.13   1.1e+03      17      81 ..     448     515 ..     427     530 .. 0.61
   5 ?    0.9   1.0     0.072   6.4e+02      21      41 ..     725     745 ..     709     751 .. 0.52
   6 !   52.9   3.4   4.2e-18   3.8e-14       2      95 ..     754     844 ..     753     845 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.9
        FtsX 31 valviGlglgl 41
                +a v+G+ + +
  KIR61669.1 21 LAVVLGVMFVS 31
                33333322222 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.37
        FtsX  62 isidlitvliiivlllllalla 83 
                 + + + +v+++++ +l+l +++
  KIR61669.1 272 VLLGFAAVALLVGTFLILNTFS 293
                 4444444444444444444444 PP

  == domain 3  score: 50.3 bits;  conditional E-value: 2.7e-17
        FtsX   2 reigilralGmkkkqvlllllteillitlvalviGlgl....gllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiskilkkep 96 
                 re++++ra+G++ +q+++ +++e+l+i+lva+v+Glg+    g+l+a+++  + +       + i +++ +v+ ++++++l++++a+ll++++++++ p
  KIR61669.1 301 RELALMRAIGASGRQIIGSVVLEALAIGLVASVLGLGAgvgvGALLAWAFGRFAGGL---ELAGIGVPPQAVVGAFAVGMLITVVAALLPALRAARIPP 396
                 89*********************************7773333566666655555555...***********************************9976 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.13
        FtsX  17 vlllllteillitlvalviGlglgllaaqllsdvllssvfs...selkisidlitvliiivlllllal 81 
                 vl  +++ +ll+ l++ ++  +lg+l+a+ +   l+   ++    +++i+   ++v i++v ++ ++l
  KIR61669.1 448 VLFTFIGVALLTPLISRPVVSLLGALFAWSVPGRLGRLNSGrnpRRTAITAAALMVGIALVTGVTVIL 515
                 44455555555666666666666999999888888888664544444444444444444444444443 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.072
        FtsX  21 llteillitlvalviGlglgl 41 
                 ++  +l++++v +v+G+++ l
  KIR61669.1 725 MIQILLALAIVIAVLGIVNTL 745
                 233333444444444433333 PP

  == domain 6  score: 52.9 bits;  conditional E-value: 4.2e-18
        FtsX   2 reigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiskilkke 95 
                 re+g+lra+G++++q+++++++e+++i+++++++G+++g+ +  ++   l  +   + +++ ++++++ i+++l+ l+ ++a++l++ ++++++
  KIR61669.1 754 RELGLLRAIGLRRAQTMRMITVEAVVISVFGALLGVAVGTGLGAAVVRALKDE---GITDLVLPWSQMGIFLGLAALIGVVAAALPAVRAARIN 844
                 8****************************************************...9*********************************9987 PP

>> MacB_PCD  MacB-like periplasmic core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   7.5   9.9e-17   8.9e-13       2     193 ..      17     239 ..      16     241 .. 0.66
   2 ?   -4.3   1.9         2   1.8e+04      10      25 ..     325     340 ..     324     354 .. 0.72
   3 !   53.7   6.0   3.6e-18   3.2e-14       1     194 [.     494     695 ..     494     696 .. 0.74
   4 !    8.0   3.0   0.00036       3.2       1      37 [.     721     757 ..     721     772 .. 0.88
   5 ?   -3.7   6.3       1.4   1.3e+04       3      46 ..     773     816 ..     771     848 .. 0.64

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 9.9e-17
    MacB_PCD   2 lltvLGiaiGvaaviaivslgeglqasvlsqisdl..gnlvtvtpgk......gsges....lsdpdvealrrevp.veavapvv....tvrgggsgee 83 
                 +l+ L++++Gv++v++ ++l+++l +s++  ++d+  g  v+v  ++      g+ge+    ++ + v+++ r+vp v++++  v    ++  g+ +++
  KIR61669.1  17 VLSGLAVVLGVMFVSGAFVLTDTLGRSFDAVFADAfaGVDVNVAAKPklevgeGEGEQvalpFPTDVVDRV-RAVPgVASATGLVnadgARLIGS-NGK 113
                 67889****************************99765445565555888866333334433444444443.46899999999864443111221.122 PP

    MacB_PCD  84 evtvvgvdp...dyfkvfgl.klaeGrffteadlrggpnvvvigeelaerlf.pvGdtirl........kpftVvGvledppgsgsalg.ddavylp.. 166
                  vt  g+ +   ++    +l +l eGr+ +     +++++++++++la++   +vGd++          ++ft vGv+  ++g  + +g +  +++   
  KIR61669.1 114 VVTSFGPPQlgvNWTGESDLvRLREGRG-P-----QADDEIAVNAALAKAAKvKVGDRVGAltafeskrREFTLVGVFGYSSGRDTIGGaNEVAFTTpa 206
                 2333332213334444444433455544.2.....37778**********8899***99667889999999******8555466666664444444346 PP

    MacB_PCD 167 lttl......qrrsitvrlkdgadleaaaaele 193
                 +++l       ++++tvr++dg+ +e++++++ 
  KIR61669.1 207 AQRLmlgapgTFNNVTVRVADGVRPETVRDDVA 239
                 44444555444677***************9987 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 2
    MacB_PCD  10 iGvaaviaivslgegl 25 
                 ++++ v ++++lg+g+
  KIR61669.1 325 LAIGLVASVLGLGAGV 340
                 5667777777777665 PP

  == domain 3  score: 53.7 bits;  conditional E-value: 3.6e-18
    MacB_PCD   1 slltvLGiaiGvaaviaivslgeglqasvlsqisdl.gnlvtvtpgk..gsgeslsdpdvealrrevp.veavapvv....tvrgggsgeeevtvvg.v 90 
                 +++t  ++++G+a v++++++ +++++s++ + +   ++ ++++  +    +++++++ v+  ++++p v+av  v+    +v g+      + vv+ +
  KIR61669.1 494 TAITAAALMVGIALVTGVTVILDSAKSSISASAARTvDAQLVISGEQtgPRPPTFDASVVDK-AAALPgVDAVLGVYndnaIVDGD---R--TYVVAlT 586
                 89*****************************9986665556676665644444455555542.34689999999986554322333...2..2355535 PP

    MacB_PCD  91 d.pdyfkvfglklaeGrffteadlrggpnvvvigeelaerlf.pvGdtirl........kpftVvGvledppgsgsalgddavylp......lttlqrr 173
                 d +++++++g  +++G     ++++ +p++v+++ + a++l   vGd+++          ++tV++vl+d++    ++g  +++lp      +t+ +  
  KIR61669.1 587 DlAAMARIYGTVPQSG-----TAATLKPDQVALSVSGAKELGkSVGDRLTAqfarsespHTYTVAAVLPDER----SIG--SIILPrqagpeFTNPEPF 674
                 5456666777744777.....334457999**********99**************99999*******8863....334..8****5554444444555 PP

    MacB_PCD 174 sitvrlkdgadleaaaaelek 194
                 s +vrl++g+ +++++ +l++
  KIR61669.1 675 SALVRLTPGTPVSQVQPQLDA 695
                 6***************99986 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.00036
    MacB_PCD   1 slltvLGiaiGvaaviaivslgeglqasvlsqisdlg 37 
                 +llt++ i ++ a via+++++++l  svl++ ++lg
  KIR61669.1 721 TLLTMIQILLALAIVIAVLGIVNTLALSVLERTRELG 757
                 89************************99999988777 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 1.4
    MacB_PCD   3 ltvLGiaiGvaaviaivslgeglqasvlsqisdlgnlvtvtpgk 46 
                 +tv +++i+v+   + v++g+gl a+v + ++d g +  v p++
  KIR61669.1 773 ITVEAVVISVFGALLGVAVGTGLGAAVVRALKDEGITDLVLPWS 816
                 67778889999999999999999999888888776444466654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1016  (0.056668); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 5508.98
//
Query:       KIR61670.1  [L=257]
Description: peptide ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-29  102.8   0.0      3e-29  102.3   0.0    1.2  1  ABC_tran     ABC transporter
    1.1e-06   28.3   0.0      0.019   14.4   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
    1.9e-05   24.7   0.0     0.0055   16.5   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    3.3e-05   23.6   0.5    5.9e-05   22.7   0.0    1.7  1  AAA_29       P-loop containing region of AAA domain
    0.00051   20.0   0.0    0.00084   19.3   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
    0.00071   19.9   0.1     0.0071   16.6   0.1    2.1  2  AAA_22       AAA domain
    0.00094   19.7   0.0     0.0014   19.1   0.0    1.2  1  AAA_23       AAA domain
     0.0052   17.2   0.1     0.0083   16.5   0.1    1.6  1  AAA_16       AAA ATPase domain
     0.0058   16.2   0.4      0.066   12.8   0.1    2.1  2  AAA_25       AAA domain
  ------ inclusion threshold ------
       0.03   14.0   1.2      0.093   12.4   0.4    2.1  2  AAA_30       AAA domain
      0.036   13.0   0.0        3.6    6.4   0.0    2.1  2  AAA_10       AAA-like domain
      0.067   12.9   0.1       0.26   11.0   0.0    1.9  2  AAA_24       AAA domain
      0.072   13.3   0.2       0.52   10.5   0.1    2.1  2  AAA_33       AAA domain
      0.079   13.0   0.2       0.33   11.1   0.1    1.9  2  MMR_HSR1     50S ribosome-binding GTPase
       0.13   12.5   0.0        2.9    8.2   0.0    2.3  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
       0.19   11.1   0.1        3.7    6.8   0.1    2.1  2  ATPase       KaiC
       0.21   12.1   0.1       0.65   10.5   0.1    1.8  2  AAA_18       AAA domain
       0.65   10.2   2.3       0.73   10.1   0.6    1.9  2  AAA_28       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.0     3e-32     3e-29       1     136 [.      32     178 ..      32     179 .. 0.94

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 3e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren...........esdee 84 
                 l+ vs ++++g+ +ai+G++G+GKStL+ +lagl + t G++ + ++ ++       ++  r ++g+++q+ +l p+lt++en            + ++
  KIR61670.1  32 LRGVSAEFERGRFTAIMGPSGSGKSTLMHCLAGLDSVTRGTVAIGDTTVTGlgdaGLTKLRRDKVGFIFQQFNLLPTLTAKENillplsiagrkPDPAW 130
                 6789*********************************************99999878899999**************************9988777788 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  + ++ ++gl +  d++     ++LSgGq+qrva aral+ +p+++++DEpt
  KIR61670.1 131 YDVVIGTVGLRDRLDHRP----AQLSGGQQQRVACARALVARPEVIFADEPT 178
                 999999999999666665....*****************************9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.9e-05     0.019      24      44 ..      42      62 ..      31      67 .. 0.82
   2 !   12.0   0.0    0.0001       0.1     135     209 ..     149     221 ..      84     228 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-05
                SSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldAi 44
                 +ftai+Gp GSGKs l+  +
  KIR61670.1 42 GRFTAIMGPSGSGKSTLMHCL 62
                36**************99765 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.0001
                 TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHH.CTTSEEEE.E-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.xxxxxxxxxxxxxxx RF
       SMC_N 135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkek.sknaQfiv.islreemlekadklv 209
                  +LSgG+++ va+a  +    ++p+ ++  De   +LD +  ++v ++l+++ +++ Q iv ++++ +  + ad++v
  KIR61670.1 149 AQLSGGQQQRVACARAL---VARPEVIF-ADEPTGNLDSRSGAEVLSFLRNSvREHGQTIVmVTHDPTAAAYADRVV 221
                 48**********99663...46777766.5********************662667999983567776677777765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.5e-06    0.0055       1      41 [.      44      81 ..      44     102 .. 0.70
   2 !    6.2   0.0     0.008       7.9     235     300 ..     149     212 ..     126     215 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.5e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsgggg 41
                ++++ Gp gsGKS+L+ +l +l   d+  +g+  + + +++
  KIR61670.1 44 FTAIMGPSGSGKSTLMHCLAGL---DSVTRGTVAIGDTTVT 81
                79*******************9...5555555555544444 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.008
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSpl 300
                 ++lS G+++  a + al +++    +++ DEp  +L+ +  +++l +l++  r +g  ++++TH+p+
  KIR61670.1 149 AQLSGGQQQRVACARALVARP---EVIFADEPTGNLDSRSGAEVLSFLRNSVReHGQTIVMVTHDPT 212
                 667777777756666666666...99************999999999966666255566******96 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   5.9e-08   5.9e-05      14      39 ..      34      59 ..      30      65 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 5.9e-08
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTll 39
                g ++e+++  +t ++GpsGsGKSTl+
  KIR61670.1 34 GVSAEFERGRFTAIMGPSGSGKSTLM 59
                5678898555***************8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   8.5e-07   0.00084      92     126 ..      34      69 ..       4      82 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8.5e-07
                  HHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  92 elkellkd.ktsvlvGqSGvGKStLinallpelelk 126
                   ++++++  ++++++G+SG GKStL+  l++ +++ 
   KIR61670.1  34 GVSAEFERgRFTAIMGPSGSGKSTLMHCLAGLDSVT 69 
                  5555665559*******************9865544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   7.1e-06    0.0071       4      27 ..      41      64 ..      37     102 .. 0.86
   2 ?    1.0   0.0      0.48   4.8e+02      82     127 ..     161     206 ..     133     212 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.1e-06
      AAA_22  4 tagilvvtGesGtGKTtllrrlle 27
                + ++++++G+sG+GK+tl+  l+ 
  KIR61670.1 41 RGRFTAIMGPSGSGKSTLMHCLAG 64
                6799**************998875 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.48
      AAA_22  82 leqalraravielliiDEaqh.lr..s.eealeeLrsllnlsrkgvqliL 127
                 +++al ar  +e++  DE    l+  s +e+l++Lr+ +   ++g ++++
  KIR61670.1 161 CARALVAR--PEVIFADEPTGnLDsrSgAEVLSFLRNSVR--EHGQTIVM 206
                 33333333..558888887666776426888888877777..66655555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.4e-06    0.0014      13      39 ..      35      62 ..      29      65 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.4e-06
      AAA_23 13 qeidFsk.gltlItGpNGaGKTTildAi 39
                ++ +F++  +t+I Gp G+GK+T++ ++
  KIR61670.1 35 VSAEFERgRFTAIMGPSGSGKSTLMHCL 62
                5567866369***************998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   8.4e-06    0.0083      21      45 ..      41      63 ..      25     210 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.4e-06
      AAA_16 21 sgrpelvllsGesGvGKsslvrell 45
                +  ++ + + G+sG+GKs+l+ +l+
  KIR61670.1 41 R--GRFTAIMGPSGSGKSTLMHCLA 63
                3..38899*************9998 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   6.6e-05     0.066      31      54 ..      40      63 ..      18      82 .. 0.86
   2 ?    1.4   0.0      0.21   2.1e+02     161     188 ..     182     209 ..     171     215 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.6e-05
      AAA_25 31 pagelallaGapgtGKttlaldla 54
                 +g +++++G++g+GK+tl   la
  KIR61670.1 40 ERGRFTAIMGPSGSGKSTLMHCLA 63
                6899***************98887 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.21
      AAA_25 161 snsdvgalvealeriarrtgaavllvhH 188
                 +++  +++++ l++  r++g ++++v H
  KIR61670.1 182 DSRSGAEVLSFLRNSVREHGQTIVMVTH 209
                 44556889999999************99 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   9.3e-05     0.093      17      45 ..      41      69 ..      25      88 .. 0.79
   2 ?   -0.4   0.0      0.79   7.8e+02      35      60 ..     190     215 ..     154     248 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.3e-05
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaa 45
                + r++++ Gp G+GK+t++  l+ +    
  KIR61670.1 41 RGRFTAIMGPSGSGKSTLMHCLAGLDSVT 69
                45699**************9998776665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.79
      AAA_30  35 lkalreaweaaggrviglAptgkaAk 60 
                 l+ lr+ ++++g++++++++  +aA+
  KIR61670.1 190 LSFLRNSVREHGQTIVMVTHDPTAAA 215
                 55566666677777777776666664 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0036       3.6      12      42 ..      33      63 ..      27     116 .. 0.85
   2 ?    4.7   0.0     0.012        12     242     284 ..     170     212 ..     161     220 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0036
      AAA_10 12 qevkgsktnasasliiGdlGnGKSvlakllv 42
                ++v  + ++   ++i+G+ G GKS l+  l 
  KIR61670.1 33 RGVSAEFERGRFTAIMGPSGSGKSTLMHCLA 63
                6666666777778*************99875 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.012
      AAA_10 242 kvvifDEawiftssaeGkkllkelvRiGRsynaavylvtqsad 284
                 +v++ DE     +s  G+++l+ l+   R +   +++vt+++ 
  KIR61670.1 170 EVIFADEPTGNLDSRSGAEVLSFLRNSVREHGQTIVMVTHDPT 212
                 68899****************9999999************975 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00026      0.26       5      23 ..      45      69 ..      41     133 .. 0.77
   2 ?   -0.4   0.0      0.82   8.2e+02     109     168 ..     187     241 ..     183     248 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00026
      AAA_24  5 iliyGpsgiGKTtlakel......g 23
                 +i+Gpsg+GK+tl+  l      +
  KIR61670.1 45 TAIMGPSGSGKSTLMHCLagldsvT 69
                589***********98886555551 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.82
      AAA_24 109 eefrrllkk.lqelrknvifiahektrkdedpegeakytrlepklgkktanelkeevDlvl 168
                 +e+ ++l++ ++e +++++++ h  t     ++         +  g+ ++++++  +D+vl
  KIR61670.1 187 AEVLSFLRNsVREHGQTIVMVTHDPTAAAYADRVV------FLADGEIVSELIEPTADTVL 241
                 67888888888888889999988766655544333......44445555555555555555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00052      0.52       4      20 ..      47      63 ..      45     116 .. 0.90
   2 ?    0.9   0.0      0.48   4.8e+02      87     116 ..     192     221 ..     131     247 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00052
      AAA_33  4 lvGlpGsGKstlaerll 20
                + G++GsGKstl + l+
  KIR61670.1 47 IMGPSGSGKSTLMHCLA 63
                57**********98765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.48
      AAA_33  87 rflklarrlgvpvrivvvetdeetlkeRla 116
                  +++ +r++g  + +v+ ++  + +++R+ 
  KIR61670.1 192 FLRNSVREHGQTIVMVTHDPTAAAYADRVV 221
                 345556788888888888888888888875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00033      0.33       3      22 ..      46      65 ..      44      90 .. 0.78
   2 ?   -0.5   0.0       1.3   1.3e+03      72     101 ..     213     244 ..     157     254 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00033
                EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge 22
                ai+G + +GKStL+  l g 
  KIR61670.1 46 AIMGPSGSGKSTLMHCLAGL 65
                8**************99983 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.3
                 HHHCTSEEEEEEETT..TTCSHHHHHHHHHHH CS
    MMR_HSR1  72 aleeadlillvvdas..eeklkpldeeleell 101
                 a   ad ++++ d +  +e ++p   ++ +++
  KIR61670.1 213 AAAYADRVVFLADGEivSELIEPTADTVLDTM 244
                 34446778888873355555666666665555 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0029       2.9      29      89 ..     147     194 ..     129     195 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0029
     SbcCD_C  29 ssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 + ++lSGG++q +   a a al            +++++f DE  ++lD++s a++l++l+
  KIR61670.1 147 RPAQLSGGQQQRV---ACARAL----------VARPEVIFADEPTGNLDSRSGAEVLSFLR 194
                 5556666666332...222222..........23578899999999999999999999987 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0037       3.7      16      35 ..      39      58 ..      34      76 .. 0.90
   2 ?    2.0   0.0      0.11   1.1e+02      37      61 ..     190     214 ..     180     239 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0037
      ATPase 16 ipegrvvlitGepGtGKtif 35
                + +gr + i+G +G+GK+++
  KIR61670.1 39 FERGRFTAIMGPSGSGKSTL 58
                7899*************997 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.11
      ATPase  37 lqFlikgaekygepgvfvtveepae 61 
                 l Fl +++++ g+  v+vt + +a 
  KIR61670.1 190 LSFLRNSVREHGQTIVMVTHDPTAA 214
                 4688888888888888888776654 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00065      0.65       3      20 ..      47      64 ..      46     115 .. 0.81
   2 ?   -2.0   0.0       4.9   4.9e+03      59      84 ..     188     211 ..     172     224 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00065
      AAA_18  3 ltGtpGvGKttlakeLsk 20
                ++G++G+GK+tl + L+ 
  KIR61670.1 47 IMGPSGSGKSTLMHCLAG 64
                89**********998865 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.9
      AAA_18  59 klldaleenssaleegknlvidghla 84 
                 ++l+ l+++   +e+g+++v+  h  
  KIR61670.1 188 EVLSFLRNSV--REHGQTIVMVTHDP 211
                 5555566654..57888888776654 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.6   0.00073      0.73       3      25 ..      46      73 ..      44      93 .. 0.80
   2 ?   -2.9   0.0       7.1   7.1e+03      61      79 ..     155     175 ..     141     185 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00073
      AAA_28  3 vitGgestGKTtlleaLa.....argyp 25
                +i+G++++GK+tl+  La      rg++
  KIR61670.1 46 AIMGPSGSGKSTLMHCLAgldsvTRGTV 73
                79*************9995554444655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.1
      AAA_28  61 eeqleeeaaa..aankvlfcD 79 
                 ++q+ ++a+a  a ++v+f D
  KIR61670.1 155 QQQRVACARAlvARPEVIFAD 175
                 455555566667788888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 1585.67
//
Query:       KIR61671.1  [L=229]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-26   90.6   0.0      1e-25   90.1   0.0    1.3  1  Response_reg   Response regulator receiver domain
    9.5e-21   73.1   0.6    2.1e-20   72.0   0.6    1.6  2  GerE           Bacterial regulatory proteins, luxR family
    5.6e-10   38.7   0.4    1.2e-09   37.7   0.1    1.7  2  Sigma70_r4_2   Sigma-70, region 4
    5.8e-07   28.9   0.5    1.2e-06   27.9   0.5    1.6  1  Sigma70_r4     Sigma-70, region 4
    0.00038   20.1   0.1    0.00078   19.2   0.1    1.5  1  HTH_38         Helix-turn-helix domain
     0.0021   18.0   0.1     0.0038   17.1   0.1    1.4  1  Sigma70_ECF    ECF sigma factor
     0.0022   17.8   0.6     0.0071   16.1   0.2    2.1  3  HTH_23         Homeodomain-like domain
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.027   14.0   0.0    1.6  1  HTH_24         Winged helix-turn-helix DNA-binding
      0.027   14.3   0.1      0.071   12.9   0.1    1.7  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
      0.043   13.8   0.4       0.16   12.0   0.1    2.0  2  HTH_11         HTH domain
      0.047   13.5   1.6       0.79    9.6   0.4    2.8  2  HTH_10         HTH DNA binding domain
      0.052   13.6   0.5       0.15   12.2   0.2    2.0  2  HTH_20         Helix-turn-helix domain
      0.055   12.9   0.2       0.19   11.2   0.2    1.9  2  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
      0.072   13.1   0.0       0.23   11.5   0.0    1.9  1  HTH_29         Winged helix-turn helix
      0.098   13.1   0.1       0.25   11.8   0.1    1.6  1  HTH_40         Helix-turn-helix domain
       0.11   12.1   0.0       0.22   11.2   0.0    1.4  1  CENP-B_N       CENP-B N-terminal DNA-binding domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   9.2e-29     1e-25       1     112 []      14     126 ..      14     126 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 9.2e-29
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   +l++dD+pl+r+++r +l  eeg+  vaea dg ea++l ++  +d++l+Di+mp+mdG+ +++ i e    ++v+ilt+ + +e++v al+aga++
    KIR61671.1  14 ILLADDQPLLRTGFRMVLGsEEGLDIVAEAGDGVEAVDLSRRLLPDVVLMDIRMPRMDGVAATRAIVEARLPVRVLILTTFDLDEYVVGALRAGASG 110
                   89*****************99**************************************************************************** PP

                   EEESSG-HHHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkale 112
                   fl+K++  e+L++a++
    KIR61671.1 111 FLAKDVPAEDLVTAIR 126
                   ************9985 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.7   5.3e+03      14      34 ..     107     128 ..     104     130 .. 0.68
   2 !   72.0   0.6   1.8e-23   2.1e-20       2      57 .]     164     219 ..     163     219 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.7
                 HCTTS-HHHH.HHHHTS-HHHH CS
        GerE  14 laeGksnkeI.AeelniSekTV 34 
                  a+G+  k++ Ae+l  + +TV
  KIR61671.1 107 GASGFLAKDVpAEDLVTAIRTV 128
                 5677777776677888888888 PP

  == domain 2  score: 72.0 bits;  conditional E-value: 1.8e-23
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 +L++RErevL  +a G+sn eIA+el +Se+TVk+h++++++KL++++rv++v+la
  KIR61671.1 164 TLTEREREVLVQVARGLSNAEIARELTVSETTVKTHVGHVLTKLGLRDRVQAVVLA 219
                 7****************************************************987 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.1   1.1e-12   1.2e-09       6      54 .]     160     207 ..     159     207 .. 0.94
   2 ?   -2.9   0.0       5.2   5.9e+03      17      27 ..     214     224 ..     211     224 .. 0.79

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.1e-12
                   HHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   6 ealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   +al++L+er+re+++     gls +EIA++l +se+tVk+++   + kL
    KIR61671.1 160 RALSTLTEREREVLVQ-VARGLSNAEIARELTVSETTVKTHVGHVLTKL 207
                   79**************.79**********************98888776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.2
                   HHHHHHHTS-- CS
  Sigma70_r4_2  17 eifllrylegl 27 
                   ++++l y+ gl
    KIR61671.1 214 QAVVLAYESGL 224
                   68889899886 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.5   1.1e-09   1.2e-06       1      48 [.     161     207 ..     161     208 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.1e-09
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 aL++L+ererevl+++  +gl+ +EI+++l +S+ +V+ +    l kL
  KIR61671.1 161 ALSTLTEREREVLVQV-ARGLSNAEIARELTVSETTVKTHVGHVLTKL 207
                 89************98.5999******************999999888 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   6.9e-07   0.00078       5      40 ..     165     199 ..     163     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 6.9e-07
      HTH_38   5 LsleeReeIerllaeGlslreIArrLgrspsTIsRE 40 
                 L+  eR e     a+Gls++eIAr+L +s +T+  +
  KIR61671.1 165 LTERER-EVLVQVARGLSNAEIARELTVSETTVKTH 199
                 455555.3344469******************9766 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   3.4e-06    0.0038     138     172 ..     166     200 ..     159     212 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.4e-06
  Sigma70_ECF 138 peqarlvelrkleGlsveEiAeklgvskrtverrl 172
                   e  r+v +++  Gls++EiA +l vs+ tv+ + 
   KIR61671.1 166 TEREREVLVQVARGLSNAEIARELTVSETTVKTHV 200
                  5678999************************9765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.7   6.4e+03      32      41 ..     138     147 ..     135     152 .. 0.59
   2 !   16.1   0.2   6.3e-06    0.0071       9      35 ..     171     197 ..     164     200 .. 0.83
   3 ?   -2.9   0.0         6   6.7e+03       5      17 ..     210     223 ..     209     224 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.7
      HTH_23  32 rTvyrwlkry 41 
                 r + r l r+
  KIR61671.1 138 RILKRLLDRF 147
                 4455666666 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 6.3e-06
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTvy 35 
                 ++l  +a+Gls +eIAreL vs+ Tv 
  KIR61671.1 171 EVLVQVARGLSNAEIARELTVSETTVK 197
                 47777788*****************96 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 6
      HTH_23   5 reRlrillllae.G 17 
                 r+R +++ l+ e G
  KIR61671.1 210 RDRVQAVVLAYEsG 223
                 56677666665435 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.4e-05     0.027      15      38 ..     177     200 ..     171     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-05
      HTH_24  15 nprisqreLAerlglSpstvnrrl 38 
                   ++s++e+A++l +S +tv++++
  KIR61671.1 177 ARGLSNAEIARELTVSETTVKTHV 200
                 568*******************98 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   6.4e-05     0.071      18      35 ..     180     197 ..     173     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.4e-05
  HTH_AsnC-type  18 isyaeLAervGlSestvl 35 
                    +s+ae+A+++ +Se+tv 
     KIR61671.1 180 LSNAEIARELTVSETTVK 197
                    69**************96 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.6   1.8e+03      41      53 ..      34      46 ..      31      48 .. 0.85
   2 ?   12.0   0.1   0.00014      0.16      13      36 ..     178     200 ..     168     216 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.6
      HTH_11 41 elgvpIesepgrG 53
                e g++I++e+g G
  KIR61671.1 34 EEGLDIVAEAGDG 46
                7899******988 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00014
      HTH_11  13 rgpisgeeLAeeLnvSrrtvrrdI 36 
                 rg +s +e+A+eL vS++tv  ++
  KIR61671.1 178 RG-LSNAEIARELTVSETTVKTHV 200
                 44.8999*************9987 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.4   0.00071      0.79      20      51 ..     176     207 ..     165     208 .. 0.81
   2 ?   -1.3   0.0       1.8     2e+03       6      16 ..     213     223 ..     212     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00071
      HTH_10  20 yPRrvtlkeLAkelGIskstlsehLrkaeskl 51 
                 + R  + +e+A el +s++t++ h+  +  kl
  KIR61671.1 176 VARGLSNAEIARELTVSETTVKTHVGHVLTKL 207
                 56888999****************98877775 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.8
      HTH_10   6 levlklAyemG 16 
                 ++++ lAye+G
  KIR61671.1 213 VQAVVLAYESG 223
                 578999***99 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       9.3     1e+04      22      34 ..      44      56 ..      37      68 .. 0.65
   2 ?   12.2   0.2   0.00013      0.15      20      53 ..     175     209 ..     133     213 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 9.3
                CTTB-HHHHHHHH CS
      HTH_20 22 aegltaselaerl 34
                ++g+ a +l +rl
  KIR61671.1 44 GDGVEAVDLSRRL 56
                5666666777776 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00013
                 STCTTB-HHHHHHHHTS-HHHHHHHH.HHHHHCTT CS
      HTH_20  20 araegltaselaerldlskntlsyHL.rvLeeagL 53 
                   a+gl+ +e+a++l +s +t+  H+ +vL + gL
  KIR61671.1 175 QVARGLSNAEIARELTVSETTVKTHVgHVLTKLGL 209
                 5699**********************999999887 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.4   4.9e+03      15      27 ..      95     107 ..      92     109 .. 0.76
   2 ?   11.2   0.2   0.00017      0.19      17      45 ..     169     197 ..     156     198 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.4
  HTH_Tnp_ISL3  15 rleayilellles 27 
                   +l++y++ +l+ +
    KIR61671.1  95 DLDEYVVGALRAG 107
                   7899999999877 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00017
  HTH_Tnp_ISL3  17 eayilelllesrsvkavArqlgvSwtTVw 45 
                   e+ +l ++ ++ s +++Ar+l vS+tTV+
    KIR61671.1 169 EREVLVQVARGLSNAEIARELTVSETTVK 197
                   566777778888****************7 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00021      0.23       3      31 ..     171     198 ..     170     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00021
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvyr 31 
                 ++l  +a+G+s  ++iA+ l +s++tv +
  KIR61671.1 171 EVLVQVARGLS-NAEIARELTVSETTVKT 198
                 578889****8.**************966 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00023      0.25      10      37 ..     177     204 ..     170     219 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00023
      HTH_40  10 eeglsieeIAkerglkesTIegHLaeli 37 
                   gls +eIA+e  ++e+T+ +H+ + +
  KIR61671.1 177 ARGLSNAEIARELTVSETTVKTHVGHVL 204
                 5799*******************98765 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0002      0.22      14      41 ..     171     198 ..     159     202 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
                 HHHHHHHCTT-HHHHHHHHT--CCHHHH CS
    CENP-B_N  14 evIqrleegeSkaelarrfnvpestlsd 41 
                 ev  ++ +g S ae+ar++ v e+t+ +
  KIR61671.1 171 EVLVQVARGLSNAEIARELTVSETTVKT 198
                 5666678999***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1581.16
//
Query:       KIR61672.1  [L=398]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-18   66.8   8.4    1.8e-18   66.8   8.4    3.9  5  HisKA_3      Histidine kinase
    4.8e-07   30.3   0.1    9.6e-06   26.1   0.0    2.7  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
     0.0022   17.9   0.1     0.0022   17.9   0.1    2.7  3  HATPase_c_2  Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2      0.11   6.6e+02      15      34 ..      89     108 ..      87     116 .. 0.83
   2 ?   -0.7   0.4      0.37   2.2e+03      37      54 ..     161     178 ..     140     187 .. 0.46
   3 !   66.8   8.4   3.1e-22   1.8e-18       1      67 [.     191     257 ..     191     258 .. 0.98
   4 ?   -1.2   0.0      0.53   3.1e+03      38      58 ..     309     329 ..     302     333 .. 0.84
   5 ?   -2.6   0.0       1.4   8.2e+03      13      31 ..     354     372 ..     353     377 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHTTT- CS
     HisKA_3  15 qsLsaiklqlelakrllekd 34 
                 qsL++++l   +a+++ +++
  KIR61672.1  89 QSLTFMALTYTMAAHHRARP 108
                 9***********99887654 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.37
                 HHHHHHHHHHHHHHHHHH CS
     HisKA_3  37 kaaeqlreieelarealq 54 
                 + ++  ++++e+ar a q
  KIR61672.1 161 ARRASTEALRERARVAEQ 178
                 333333333333333333 PP

  == domain 3  score: 66.8 bits;  conditional E-value: 3.1e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLrpaa 67 
                 ER+riARELHD+v+++ s++ +++  a+r l++dp++a+e++++ie++ r +l+e+Rrll  Lr++a
  KIR61672.1 191 ERRRIARELHDVVAHHVSVMGVLATGARRVLRRDPDAADEAIATIEDTGRATLRELRRLLDVLRTDA 257
                 9***************************************************************875 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.53
                 HHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3  38 aaeqlreieelarealqevRr 58 
                 ++e+l+++ ++a ea + vR 
  KIR61672.1 309 VQEALTNALKHAGEATAVVRL 329
                 578999999999999998885 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHHHT CS
     HisKA_3  13 vgqsLsaiklqlelakrll 31 
                 vg+ L++++ +++l  ++l
  KIR61672.1 354 VGHGLVGMRERVGLYGGTL 372
                 8999999998877766665 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.43   2.6e+03      35      47 ..     225     240 ..     141     248 .. 0.64
   2 !   26.1   0.0   1.6e-09   9.6e-06       5     111 ..     304     391 ..     300     392 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.43
                 E...TEEEEEEEESSS CS
   HATPase_c  35 e...ddlvisveDnGi 47 
                     d+   ++eD+G+
  KIR61672.1 225 PdaaDEAIATIEDTGR 240
                 1234556667777776 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 1.6e-09
                 HHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEE CS
   HATPase_c   5 rLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGtt 103
                  +++i++++++Na+k+ + + +  v+++    +l ++v+D+G+G  +  +                   +G Gl  +++ v l+gG+++   +pg+G +
  KIR61672.1 304 TVYRIVQEALTNALKH-AGEATAVVRLTFGAAYLAVEVTDTGRGPAPGAVR------------------VGHGLVGMRERVGLYGGTLRTGARPGGGYR 383
                 6799************.545566688886568*************997777..................677888899988889999999999999999 PP

                 EEEEEESS CS
   HATPase_c 104 ftftlple 111
                 ++ ++p e
  KIR61672.1 384 VYARIPVE 391
                 88888876 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.16   9.8e+02      15      36 ..       5      26 ..       1      30 [. 0.83
   2 ?   -3.2   0.9       1.3   7.6e+03       4      33 ..     165     193 ..     160     208 .. 0.64
   3 !   17.9   0.1   3.7e-07    0.0022      23      80 ..     296     349 ..     272     357 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.16
  HATPase_c_2 15 aeavlrraglseelldeirlav 36
                 ++a+lrr++l++++l  + +++
   KIR61672.1  5 LRAWLRRHRLAADALLAVAVVL 26
                 789***********99887765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.3
  HATPase_c_2   4 dpehvrtvrevaeavlrraglseelldeir 33 
                    e +r+ ++vae+  +r+  +++++de r
   KIR61672.1 165 STEALRERARVAEQN-QRSLAEQAVADERR 193
                  455666666666665.56666666666555 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 3.7e-07
  HATPase_c_2  23 glseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdp 80 
                   l+e ++  +   v+Ea+tNa +ha +    ++  vrl+ ++  l vev+D G+g  p
   KIR61672.1 296 SLEEGVALTVYRIVQEALTNALKHAGE----ATAVVRLTFGAAYLAVEVTDTGRGPAP 349
                  5666666777778*************8....556889999**************9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       953  (0.0531541); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3008.57
//
Query:       KIR61673.1  [L=305]
Description: recombinase RecB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-37  127.4   0.0      1e-36  127.2   0.0    1.0  1  PDDEXK_1  PD-(D/E)XK nuclease superfamily
    0.00011   22.3   0.0    0.00018   21.7   0.0    1.3  1  Cas_Cas4  Domain of unknown function DUF83
    0.00037   19.9   0.0      0.003   16.9   0.0    2.2  1  DUF2800   Protein of unknown function (DUF2800)


Domain annotation for each model (and alignments):
>> PDDEXK_1  PD-(D/E)XK nuclease superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.0   1.7e-40     1e-36       1     255 []      25     272 ..      25     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 1.7e-40
    PDDEXK_1   1 rlSvsrletfleCplrfflryllglreeeeleapdlGtlvHaaleefyewkkldkedleelleeaveelwpellleeeilessarl..rylaeklkevl 97 
                 +lS+sr  +f++Cpl +++r++++l+e +++e+ ++GtlvHa+le++++   +  ++  e + ++v+ +w++l  e++ l + ++   +  +++  + +
  KIR61673.1  25 SLSPSRAADFKTCPLLYRFRSIDRLPERPSVEQ-ARGTLVHAVLERLFD--LPAAGRTPEAAGDLVAPQWDRLVTEQPELAALFDAddPDGTAEFLRSA 120
                 59*************************999999.**************9..444446666666999999999999998866665553366666666666 PP

    PDDEXK_1  98 eklve.rlaeeleakrgfrpvale..lefg...gekvrLkGriDrvd.dkegelriiDyKtgsappkskelaelkeglQlllYllalaegeelkeegep 189
                 + l+  ++a   e +r ++p + e  +  +   + ++ ++G +Dr+d  ++g lr++DyKtg ap + +e    +  +Ql +Y+l+l+++    ++  +
  KIR61673.1 121 SGLLGgYFAV--EDPRRLEPAEREalI--SavvDDELLIRGYLDRLDvAPDGALRVVDYKTGGAPREAFE---ARALFQLKFYALVLWRTRGVVPR--V 210
                 6665545555..555558888888533..2446789***************************8877776...67777************554444..7 PP

    PDDEXK_1 190 agalylrleepkvkdeevvkkmalteeeleallqeleelaeeil....agefparpskkCeyCpyksvCr 255
                 +++lyl+       d ++v   + ++eel+++++ +  l+++i+    +++f++rps+ C++C  +++C+
  KIR61673.1 211 LRLLYLK-------D-AEVCDYTPDAEELARFERTVVALWQAIEaataRQDFRPRPSRLCDWCNHRALCP 272
                 7777765.......4.5555555999999999999999955555555455*******99**********7 PP

>> Cas_Cas4  Domain of unknown function DUF83
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0     3e-08   0.00018      54     160 ..     156     271 ..     134     273 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 3e-08
    Cas_Cas4  54 sikiDvve.kekeklvvvEvKkskkk....eeaaklQllyYlllLe.kkgveikeGvleypkekkreevelteelr..eelekai....keieeiisse 140
                 ++ +D ++   ++ l+vv++K + +     e  a +Ql++Y+l+L  ++gv  +  vl+++  k+ e   +t++ +   + e+++    + ie+ ++++
  KIR61673.1 156 RGYLDRLDvAPDGALRVVDYKTGGAPreafEARALFQLKFYALVLWrTRGVVPR--VLRLLYLKDAEVCDYTPDAEelARFERTVvalwQAIEAATARQ 252
                 5667777766688999******98872332444578*********99****999..6666666666665555554411455555511114455444443 PP

    Cas_Cas4 141 kppkvkkkkiCkkCayaelC 160
                    ++  +++C+ C  + lC
  KIR61673.1 253 -DFRPRPSRLCDWCNHRALC 271
                 .44678899**********9 PP

>> DUF2800  Protein of unknown function (DUF2800)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.1e-07     0.003       2     228 ..      24     272 ..      23     275 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.1e-07
     DUF2800   2 AllSaSsahrWlkCppSarle..eeipdesSeyAeeGtlaHelaelklrkaldakekkgvkselkk...keeevteemeeav.....deyvdfvlekie 90 
                 A lS+S a  +  Cp   r++  +++p++ S   + Gtl H++ e +       ++ ++    +     +  + + e+++       d  ++f ++   
  KIR61673.1  24 ASLSPSRAADFKTCPLLYRFRsiDRLPERPSVEQARGTLVHAVLERLFDLPAAGRTPEAAGDLVAPqwdRLVTEQPELAALFdaddpDGTAEFLRSASG 122
                 789************9988663379********************999888866666554433322444333333444433300001334444444444 PP

     DUF2800  91 eak.......kdalvlvEqrvdfskyvpe...gfGtaDvviia.ddvLeviDlKyGkg..vkVsaekNpQlalYAlGAleefdllydiktVrltIvQPr 176
                  +           l   E++  +s++v++    +G  D + +a d++L v+D+K G       +a    Ql+ YAl   +  +++  + +        +
  KIR61673.1 123 LLGgyfavedPRRLEPAEREALISAVVDDellIRGYLDRLDVApDGALRVVDYKTGGAprEAFEARALFQLKFYALVLWRTRGVVPRVLR----LLYLK 217
                 3323334422233334667777777777789999999999999899**********8765667889999******987777776655432....23334 PP

     DUF2800 177 ldnvseweisveeLlewaeevlkp.kaeka..aegegefvpgehcrFCkakatCr 228
                   +v +++ ++eeL ++  +v++  +a +a  a+++ +  p++ c +C  +a C+
  KIR61673.1 218 DAEVCDYTPDAEELARFERTVVALwQAIEAatARQDFRPRPSRLCDWCNHRALCP 272
                 4566777777777777777766532444441125555556777889999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2519.66
//
Query:       KIR61674.1  [L=385]
Description: peptidase M50 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-15   57.2   1.6    1.2e-06   28.0   0.3    2.6  2  Peptidase_M50   Peptidase family M50
    6.3e-06   26.0   1.7    6.3e-06   26.0   1.7    2.3  2  Peptidase_M50B  Peptidase M50B-like
     0.0059   16.9   0.5       0.03   14.6   0.0    2.2  3  DUF3267         Putative zincin peptidase


Domain annotation for each model (and alignments):
>> Peptidase_M50  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.3     2e-10   1.2e-06       2     106 ..      67     136 ..      66     140 .. 0.90
   2 !   27.6   0.1   2.7e-10   1.6e-06     190     246 ..     150     204 ..     136     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2e-10
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50   2 filllgilvvvHElGHflvAklcgvkveefsigfGpkllsfkkgeteYaiallpLGGyVkmageepeeelseeeakaflkkspwqrllivlAGpla 97 
                    f++ l+ +v++HElGH+l+A++ g+ v+                     i+l  LGGy +m+ + p+               p   ll+ lAGp++
     KIR61674.1  67 FVVSLLGSVLLHELGHALTARRYGIGVRG--------------------ITLELLGGYTEMDRDAPS---------------PRVDLLVSLAGPAV 127
                    899************************99....................78888*********9965...............66999999999999 PP

                    XXXXXXXXX CS
                    xxxxxxxxx RF
  Peptidase_M50  98 nfilailvf 106
                      +l+ +++
     KIR61674.1 128 SAVLGAAAV 136
                    999987765 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 2.7e-10
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 190 sflqllalisvnLgilNLlPipvLDGghllfalleairrkplserkeevanlvglal 246
                    ++ + la+ +v+++++NLlP  +LDGg+ l+a+++a++    +   +eva  vg a+
     KIR61674.1 150 QLAFQLAVSNVIVALFNLLPGLPLDGGRALRAAVWALT--RDRHTGTEVAGWVGRAV 204
                    66778999****************************99..45566667777777665 PP

>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   1.7   1.1e-09   6.3e-06      24      90 ..      74     141 ..      35     188 .. 0.83
   2 ?   -1.2   1.5      0.23   1.3e+03      71     110 ..     196     237 ..     186     247 .. 0.52

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.1e-09
  Peptidase_M50B  24 vvffHElGHalaalLtGgrvkgielhsdesGvtvtrg..pgglgqiltllaGYlgpallGlllillsas 90 
                     +v++HElGHal+a   G  v gi+l+   +G+t +    p+     l++laG+  +a+lG+++++++ +
      KIR61674.1  74 SVLLHELGHALTARRYGIGVRGITLEL-LGGYTEMDRdaPSPRVDLLVSLAGPAVSAVLGAAAVAATLA 141
                     799**********************98.579999977687777789***************99988744 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.23
  Peptidase_M50B  71 laGYlgpallGlllills..asgkarlllvllvllllvllll 110
                     +aG +g a++ +++++ +  + ++  + l l ++ll++++l+
      KIR61674.1 196 VAGWVGRAVAVGTAAVTLvlTVNRLLAPLALPLMLLVAVTLW 237
                     566666665554444444112233333333444444444444 PP

>> DUF3267  Putative zincin peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.3   7.9e+03      57      74 ..      27      44 ..      25      53 .. 0.71
   2 !   14.6   0.0     5e-06      0.03       2      90 ..      72     163 ..      71     169 .. 0.71
   3 ?   -1.0   0.0      0.35   2.1e+03      44      64 ..     214     234 ..     179     243 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.3
     DUF3267 57 Pfvllgilllllalllps 74
                P+ l+g +lll++l++  
  KIR61674.1 27 PLHLNGSMLLLALLVTVT 44
                777787777777777544 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 5e-06
     DUF3267   2 lvlvilHEllHglffklfgkkpkkkvkfgik.lliayatsseallskkqfiiillaPfv..llgilllllalllpsstl...llllllalnaags 90 
                 l  v+lHEl H+l+ +++g    +++++  + l+ +  +  +a+ ++   +++l  P+v  +lg++ +++ l+lp+ tl   l++ l++ n++ +
  KIR61674.1  72 LGSVLLHELGHALTARRYGI-GVRGITL--ElLGGYTEMDRDAPSPRVDLLVSLAGPAVsaVLGAAAVAATLALPDGTLtnqLAFQLAVSNVIVA 163
                 56899************955.3455555..64555555666677789999999999987557788888888888866556776666666666655 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.35
     DUF3267  44 llskkqfiiillaPfvllgil 64 
                 +l+ ++ +  l +P++ll ++
  KIR61674.1 214 VLTVNRLLAPLALPLMLLVAV 234
                 334455555555555544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2417.49
//
Query:       KIR61675.1  [L=190]
Description: hypothetical protein TK50_29440 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1468.75
//
Query:       KIR61676.1  [L=97]
Description: ferredoxin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-20   72.2   0.2    5.7e-20   71.8   0.2    1.2  1  Fer4_15   4Fe-4S single cluster domain
    5.7e-12   46.0   0.0    8.4e-12   45.5   0.0    1.2  1  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I
     0.0001   22.3   0.1    0.00038   20.5   0.0    1.8  2  Fer4_19   Divergent 4Fe-4S mono-cluster
     0.0015   18.3   2.2     0.0067   16.2   0.1    2.2  2  Fer4      4Fe-4S binding domain
  ------ inclusion threshold ------
       0.28   11.3   1.9       0.47   10.6   0.1    2.0  2  Fer4_6    4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.2   1.6e-23   5.7e-20       1      66 []      11      81 ..      11      81 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 1.6e-23
     Fer4_15  1 VvvDrdaCigcglCvaeapevfeldedglasvllddgeiaeg.....evpddeeeaaqeAaraCPvdAIrv 66
                V+vD+d+C+g+glCv+ apevfe+d dgla+v+++dge++ +      vp++++ ++ ++a++CP+++I+v
  KIR61676.1 11 VWVDQDLCTGDGLCVQYAPEVFEFDVDGLAYVKGADGELQLApgsrvGVPEHLRLEVIDSAKECPGECIHV 81
                89************************************999999*************************98 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   2.3e-15   8.4e-12       1      58 []      13      81 ..      13      81 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 2.3e-15
     Fer4_13  1 VDrdtCiacgaCvelaPdvFeeddeggasvvae.qpts............eeekadaeeAadaCPvesIgv 58
                VD+d C+++g+Cv+ aP+vFe d +g a+v  + +               e ++ ++ + a++CP e+I+v
  KIR61676.1 13 VDQDLCTGDGLCVQYAPEVFEFDVDGLAYVKGAdG--ElqlapgsrvgvpEHLRLEVIDSAKECPGECIHV 81
                9***********************97766554441..1345555577787999*****************7 PP

>> Fer4_19  Divergent 4Fe-4S mono-cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.1e-07   0.00038       4      35 ..       7      38 ..       4      52 .. 0.85
   2 ?   -0.4   0.0      0.34   1.2e+03      46      56 ..      66      76 ..      59      84 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.1e-07
     Fer4_19  4 eeitiednrelCihsgnCvkglpevFdpkrkp 35
                +++++  +++lC++ g Cv+ +pevF+ + ++
  KIR61676.1  7 DQLQVWVDQDLCTGDGLCVQYAPEVFEFDVDG 38
                6789999*******************987665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.34
     Fer4_19 46 eiievverCPS 56
                e+i  +++CP 
  KIR61676.1 66 EVIDSAKECPG 76
                56677778885 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.9e-06    0.0067       1      16 [.      11      26 ..      11      27 .. 0.90
   2 ?    1.9   0.2     0.061   2.2e+02      16      23 ..      72      79 ..      71      80 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.9e-06
                EEEETTTSSS-THHHH CS
        Fer4  1 vvideekCigCGaCve 16
                v +d+++C+g G+Cv+
  KIR61676.1 11 VWVDQDLCTGDGLCVQ 26
                579***********97 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.061
                HHSTTTEE CS
        Fer4 16 evCPvgAI 23
                + CP ++I
  KIR61676.1 72 KECPGECI 79
                78**9998 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00013      0.47       2      16 ..      11      25 ..      11      26 .. 0.91
   2 ?   -0.7   0.2      0.49   1.7e+03      12      16 ..      74      79 ..      71      81 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
      Fer4_6  2 veidpdkCigCgdCv 16
                v +d+d+C+g g Cv
  KIR61676.1 11 VWVDQDLCTGDGLCV 25
                579***********8 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.49
      Fer4_6 12 C.gdCv 16
                C g+C+
  KIR61676.1 74 CpGECI 79
                667776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 686.26
//
Query:       KIR61677.1  [L=593]
Description: ATPase AAA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-49  165.5   0.0    2.6e-48  163.8   0.0    1.9  1  AAA              ATPase family associated with various cellul
    7.8e-26   89.5   1.7    1.3e-25   88.8   0.3    2.2  1  Prot_ATP_OB_N    Proteasomal ATPase OB N-terminal domain
    3.3e-15   55.8   0.3      7e-13   48.3   0.0    2.8  2  Prot_ATP_ID_OB   Proteasomal ATPase OB C-terminal domain
    1.3e-07   32.2   1.4    3.2e-05   24.4   0.0    3.3  2  AAA_16           AAA ATPase domain
      1e-05   25.9   0.0    2.2e-05   24.8   0.0    1.6  1  RNA_helicase     RNA helicase
    3.6e-05   23.6   0.0      0.002   17.9   0.0    2.6  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    6.4e-05   23.1   0.0    0.00024   21.3   0.0    2.0  1  AAA_2            AAA domain (Cdc48 subfamily)
      9e-05   22.5   1.2    0.00021   21.3   1.2    1.7  1  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
    0.00013   22.2   0.9    0.00079   19.7   0.0    2.6  1  AAA_22           AAA domain
    0.00087   19.3   0.7    0.00087   19.3   0.7    2.3  2  Cep57_CLD_2      Centrosome localisation domain of PPC89
    0.00087   19.3   0.0     0.0027   17.7   0.0    1.9  1  AAA_5            AAA domain (dynein-related subfamily)
      0.002   17.4   0.0     0.0034   16.7   0.0    1.3  1  TIP49            TIP49 P-loop domain
     0.0028   17.8   0.1     0.0072   16.5   0.0    1.7  1  AAA_33           AAA domain
     0.0029   17.9   4.3     0.0065   16.7   4.3    1.6  1  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
      0.003   17.0   0.0     0.0057   16.1   0.0    1.4  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0047   16.9   0.0       0.17   11.8   0.0    2.6  2  ATPase_2         ATPase domain predominantly from Archaea
     0.0048   16.2   1.6     0.0083   15.4   1.6    1.3  1  HAP1_N           HAP1 N-terminal conserved region
     0.0069   16.5   6.2      0.013   15.6   6.2    1.4  1  ADIP             Afadin- and alpha -actinin-Binding
     0.0069   16.3   0.2      0.062   13.2   0.0    2.2  2  NACHT            NACHT domain
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.022   14.7   0.0    1.6  1  Rad17            Rad17 P-loop domain
      0.012   14.9   0.0      0.028   13.7   0.0    1.6  1  Zeta_toxin       Zeta toxin
      0.013   16.6   5.4      0.092   13.9   5.4    2.2  1  SOGA             Protein SOGA
      0.019   15.5   2.7       0.26   11.8   0.0    2.4  2  AAA_23           AAA domain
      0.021   13.7   4.0      0.032   13.1   4.0    1.2  1  DUF812           Protein of unknown function (DUF812)
      0.024   15.2   0.0      0.077   13.5   0.0    1.9  1  AAA_18           AAA domain
      0.026   14.5   5.3      0.046   13.7   4.4    1.9  1  Laminin_II       Laminin Domain II
      0.027   14.2   0.0      0.087   12.6   0.0    1.8  1  IstB_IS21        IstB-like ATP binding protein
      0.027   14.6   3.8      0.044   13.9   3.8    1.2  1  UPF0242          Uncharacterised protein family (UPF0242) N-t
      0.029   14.6   0.7      0.077   13.2   0.7    1.7  1  RILP             Rab interacting lysosomal protein
      0.032   13.1   4.9      0.048   12.5   4.9    1.2  1  CALCOCO1         Calcium binding and coiled-coil domain (CALC
      0.035   14.2   2.7       0.14   12.3   1.3    2.5  2  Med9             RNA polymerase II transcription mediator com
      0.036   14.3   9.8      0.056   13.7   9.8    1.2  1  ATG16            Autophagy protein 16 (ATG16)
       0.04   14.0   0.0      0.091   12.8   0.0    1.6  1  AAA_14           AAA domain
      0.042   14.5   2.3       0.13   13.0   2.3    1.9  1  Vir_act_alpha_C  Virulence activator alpha C-term
      0.044   13.1   1.3      0.067   12.5   1.3    1.1  1  FAM76            FAM76 protein
      0.045   13.3   0.5       0.26   10.8   0.0    2.3  2  AAA_25           AAA domain
      0.046   12.9   0.0       0.22   10.6   0.0    2.1  2  DUF815           Protein of unknown function (DUF815)
      0.049   13.1   0.0      0.095   12.2   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
      0.055   12.5   0.0       0.26   10.4   0.0    1.9  2  Parvo_NS1        Parvovirus non-structural protein NS1
      0.094   11.3   0.0       0.18   10.4   0.0    1.4  1  FapA             Flagellar Assembly Protein A
       0.11   12.2   0.1       0.43   10.3   0.1    2.0  1  AAA_24           AAA domain
       0.12   12.9   0.2       0.79   10.2   0.0    2.3  2  ABC_tran         ABC transporter
       0.13   12.4   0.5       0.29   11.3   0.5    1.5  1  Fib_alpha        Fibrinogen alpha/beta chain family
       0.14   11.5   0.1       0.26   10.6   0.1    1.3  1  ZnuA             Zinc-uptake complex component A periplasmic
       0.15   10.6   5.7       0.19   10.2   5.7    1.1  1  FUSC             Fusaric acid resistance protein family
       0.15   11.2   0.0       0.29   10.3   0.0    1.4  1  NB-ARC           NB-ARC domain
       0.16   11.6   6.2       0.31   10.7   6.2    1.4  1  Lebercilin       Ciliary protein causing Leber congenital ama
       0.18   12.3   3.1       0.22   12.0   0.7    2.3  1  NPV_P10          Nucleopolyhedrovirus P10 protein
        0.2   12.2   9.7       0.34   11.4   9.7    1.3  1  APG6_N           Apg6 coiled-coil region
        0.2    9.4   5.4       0.28    9.0   5.4    1.1  1  Myosin_tail_1    Myosin tail
       0.22   10.2   1.1       0.33    9.6   1.1    1.1  1  DUF773           CDK5 regulatory subunit-associated protein 3
       0.23   11.3   6.5       0.36   10.7   6.5    1.2  1  CEP63            Centrosomal protein of 63 kDa
       0.24   11.5   4.7       0.42   10.7   4.7    1.4  1  BRE1             BRE1 E3 ubiquitin ligase
       0.25   10.2   6.6       0.47    9.3   6.6    1.3  1  Spc7             Spc7 kinetochore protein
       0.42    9.9   6.7       0.69    9.2   6.7    1.3  1  DUF3450          Protein of unknown function (DUF3450)
       0.45    9.8   6.9        2.9    7.2   7.0    1.9  1  GAS              Growth-arrest specific micro-tubule binding
       0.54    9.9   5.8       0.59    9.8   4.4    1.7  1  BCAS2            Breast carcinoma amplified sequence 2 (BCAS2
       0.84    9.4   6.3          4    7.2   6.3    1.9  1  KASH_CCD         Coiled-coil region of CCDC155 or KASH
        0.9   10.2   7.7       0.65   10.6   5.2    2.0  1  BST2             Bone marrow stromal antigen 2
       0.94    9.2   7.1        1.6    8.5   7.1    1.3  1  ERM              Ezrin/radixin/moesin family
        1.6    9.2   7.4        4.2    7.8   7.4    1.8  1  CENP-H           Centromere protein H (CENP-H)
        1.7    8.4   5.9         41    4.0   5.9    2.6  1  DivIC            Septum formation initiator
        1.8    7.6   5.1        2.8    7.0   5.1    1.2  1  Atg14            Vacuolar sorting 38 and autophagy-related su
          2    8.7   8.1        2.5    8.4   6.0    2.3  1  ABC_tran_CTD     ABC transporter C-terminal domain
        2.4    8.5   4.9        5.8    7.3   4.9    1.6  1  Uso1_p115_C      Uso1 / p115 like vesicle tethering protein, 
        2.6    8.7   9.6        2.8    8.6   4.0    3.1  2  SlyX             SlyX
        2.9    8.2   4.9         31    4.9   0.3    2.3  2  Spc24            Spc24 subunit of Ndc80
        3.4    7.9   5.5         48    4.2   5.5    2.4  1  Cnn_1N           Centrosomin N-terminal motif 1
        5.1    7.5   6.6         29    5.1   2.1    2.9  2  CLZ              C-terminal leucine zipper domain of cyclic n
        7.5    6.7   9.3        4.1    7.6   6.9    1.7  1  CENP-Q           CENP-Q, a CENPA-CAD centromere complex subun


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.8   0.0     1e-50   2.6e-48       1     132 []     274     422 ..     274     422 .. 0.91

  Alignments for each domain:
  == domain 1  score: 163.8 bits;  conditional E-value: 1e-50
                 EEEESSTTSSHHHHHHHHHHHH.............THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS...TSEEEEEETGGGHHHHH.TTCCCHHH CS
         AAA   1 vllyGppGtGKTllakavakel.............gvefleisgsellskyvgesekkirelfkeakeka...kpsilfiDEidalaksr.sgseseee 82 
                 +llyGppG+GKTl+akava++l              + fl+i+g+ell+kyvge+e++ir +f++a+eka   +p+i+f+DE+d+++++r sg +s++e
  KIR61677.1 274 ILLYGPPGCGKTLIAKAVANSLakkiaerlgkerhTSFFLNIKGPELLNKYVGETERHIRLIFQRAREKAgegTPVIVFFDEMDSIFRTRgSGVSSDVE 372
                 69*******************855444444433322559*********************************999***************999****** PP

                 HHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  83 ervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 +++v+qLl+e+dgv+  e+ viviga+nr+d++dpa+lr gR+d+ki+ie+
  KIR61677.1 373 NTIVPQLLSEIDGVEGLEN-VIVIGASNREDMIDPAILRpGRLDVKIKIER 422
                 ****************866.****************************986 PP

>> Prot_ATP_OB_N  Proteasomal ATPase OB N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   0.3   4.9e-28   1.3e-25       2      62 .]      98     157 ..      97     157 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.8 bits;  conditional E-value: 4.9e-28
  Prot_ATP_OB_N   2 yGtflavnsqdgtadVlvggrrmrVavsPlvdaeeLrpGqeVlLnEalvvVealgyertGe 62 
                    yG+fla++ +dgt+dV++ggr++rVavsP++d++eLr GqeVlLn+al++V+a g+er+Ge
     KIR61677.1  98 YGVFLAAH-EDGTVDVFTGGRKLRVAVSPSLDVAELRRGQEVLLNDALNIVDAFGFERVGE 157
                    9*******.7**************************************************8 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1      0.14        36      26      47 ..     121     142 ..     110     147 .. 0.85
   2 !   48.3   0.0   2.7e-15     7e-13       1      57 []     158     219 ..     156     219 .. 0.97

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.14
                     EEE-GGGSSST--TTEEEEEET CS
  Prot_ATP_ID_OB  26 vslagavpremLrpgDlVavdk 47 
                     v ++ +++ ++Lr g  V+++ 
      KIR61677.1 121 VAVSPSLDVAELRRGQEVLLND 142
                     678899**************96 PP

  == domain 2  score: 48.3 bits;  conditional E-value: 2.7e-15
                     EEEEEEE-TT.....SSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE- CS
  Prot_ATP_ID_OB   1 VatVsEvldd.....teraiVktssdeevvvslagavpremLrpgDlVavdkdtgfifEkLP 57 
                     V+ ++E+l       ++ra+V+++sdee++v+la+ +  +++r+gD++++++++ +++E++P
      KIR61677.1 158 VVMLKEILAGpegapGDRALVVSHSDEERIVHLAETLIGSPIRAGDSLMIEPRSAYAYERIP 219
                     788999999999999**********************************************9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   1.0       3.8   9.8e+02     106     138 ..      33      71 ..       3      95 .. 0.50
   2 !   24.4   0.0   1.2e-07   3.2e-05      16      88 ..     263     327 ..     241     395 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 3.8
      AAA_16 106 a.......avpelagaeasrllellkrllallsrderplv 138
                 a       ++p   +++++rl+++ ++l++l++++er lv
  KIR61677.1  33 AlvrrkltESPRHVRQLEERLAATQAQLARLTENNER-LV 71 
                 2333333322333333335555555555555555554.44 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 1.2e-07
      AAA_16  16 lervrsgrp.elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 ++      p   +ll+G++G+GK+ ++++++++l k+    ++++  +  + +++  ++++    ell++   e
  KIR61677.1 263 FREHQLR-PpKGILLYGPPGCGKTLIAKAVANSLAKK----IAERLGKE-RHTSF--FLNIK-GPELLNKYVGE 327
                 3333333.2599************************9....55544444.11111..33333.32444444444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   8.7e-08   2.2e-05       1      51 [.     274     328 ..     274     354 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 8.7e-08
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl....klkkkdsvysrnpeddfwdgYtgqe 51 
                   i+lyGp+g+GK+++ak +a++l+kk+    +++++ s++ + +  + +++Y g++
    KIR61677.1 274 ILLYGPPGCGKTLIAKAVANSLAKKIaerlGKERHTSFFLNIKGPELLNKYVGET 328
                   789************99999999888888888888999999**********9876 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.39     1e+02      69     118 ..      64     115 ..      47     132 .. 0.78
   2 !   17.9   0.0     8e-06     0.002      33      62 ..     271     300 ..     243     307 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.39
      RuvB_N  69 lekagdlaalltnleekdvlfideihrlsrave..evlysamedfrldivig 118
                  e++  l++ l++ +++ v + +ei rl++      v+ +a ed ++d+  g
  KIR61677.1  64 TENNERLVSTLKEARAQIVTLKEEIDRLAQPPSgyGVFLAAHEDGTVDVFTG 115
                 5677789999999999999999******986541268999********9987 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 8e-06
      RuvB_N  33 ldhvllyGpPGlGkttlakiiakelgvklk 62 
                    +llyGpPG Gkt +ak +a+ l  k+ 
  KIR61677.1 271 PKGILLYGPPGCGKTLIAKAVANSLAKKIA 300
                 3579********************998875 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   9.3e-07   0.00024       6      98 ..     274     379 ..     269     399 .. 0.65

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 9.3e-07
                 EEEE--TTSSHHHHHHHHHHHTT-.............-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTS.....EEEEETGGG----..--- CS
       AAA_2   6 illlgptgvGktelakalaellfv.........kkekkliradaselle..eeevehlvsrligappgyvgaeegG.....ivllDEidKihpk..ess 86 
                 ill gp g+Gkt++aka+a+ l           ++++ +  +   ell     e e+ +    + +      e+ G     iv++DE+d i ++  +  
  KIR61677.1 274 ILLYGPPGCGKTLIAKAVANSLAKkiaerlgkeRHTSFFLNIKGPELLNkyVGETERHIRLIFQRAR-----EKAGegtpvIVFFDEMDSIFRTrgSGV 367
                 8999****************99986666665444444445555555555332222333332222222.....222255588************655555 PP

                 ------HHHHHH CS
       AAA_2  87 gadvSregVqrd 98 
                 ++dv ++ V ++
  KIR61677.1 368 SSDVENTIVPQL 379
                 566655555554 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   1.2   8.3e-07   0.00021       8      66 ..      35      93 ..      15     104 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8.3e-07
  CENP-F_leu_zip  8 vlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelae 66
                    v+ kL es r+  +L+++  + +++l  + en+e+++    +++a++ tlkeei++la+
      KIR61677.1 35 VRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEIDRLAQ 93
                    6789*****************************************************98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.1e-06   0.00079       8     104 ..     274     360 ..     268     404 .. 0.60

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.1e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee....erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh 102
                 ++++G++G+GKT+ ++ ++++l +  k++e    er + +f ++++++    ll++ + +++    +     + ++++ ++ + +    +++  DE++ 
  KIR61677.1 274 ILLYGPPGCGKTLIAKAVANSLAK--KIAErlgkERHTSFFLNIKGPE----LLNKYVGETE----R---HIRLIFQRAREKAGEGTP-VIVFFDEMDS 358
                 89*******************953..3333469655555566666666....4444444444....2...222333444444444444.5666666666 PP

      AAA_22 103 lr 104
                 ++
  KIR61677.1 359 IF 360
                 44 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.3       3.4   8.6e+02       3      19 ..      23      39 ..      15      42 .. 0.65
   2 !   19.3   0.7   3.4e-06   0.00087      12      59 ..      46      93 ..      44      99 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 3.4
  Cep57_CLD_2  3 aevktLqnrLdsltrkl 19
                 ++v  Lq++L  ++rkl
   KIR61677.1 23 TQVAFLQEELALVRRKL 39
                 45666677777666665 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 3.4e-06
  Cep57_CLD_2 12 LdsltrklqvheeelkrLnkERdsalrqLgvAyeelneLkaevealrk 59
                   +l+++l++ +  l+rL   +++ ++ L +A+  +  Lk+e ++l++
   KIR61677.1 46 VRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEIDRLAQ 93
                 6799******************************************97 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     1e-05    0.0027       2      75 ..     274     357 ..     273     410 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1e-05
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HH..HHH--B--...........--------......G-SEEEEESGG CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdttee..dlkgrreik..ngttslvdsplvraar......egeilvlDEve 75 
                 +lL GppG+gK+ +a+ +a  l +++ + +++++ t+   ++kg+  ++   g+t+++   + + ar      ++ i+++DE +
  KIR61677.1 274 ILLYGPPGCGKTLIAKAVANSLAKKIAERLGKERHTSFflNIKGPELLNkyVGETERHIRLIFQRARekagegTPVIVFFDEMD 357
                 89********************99999999888877632255555555566444444444444444446666666666666655 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.3e-05    0.0034      32      78 ..     249     299 ..     219     334 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.3e-05
                 XXXXXX...XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  32 areaag...vivelikekkla.GravLlaGpsgtGktalaiaiskelgedv 78 
                  r+a+    +  +l +e++l   +++Ll Gp+g Gkt +a a++++l++++
  KIR61677.1 249 IRDAVElpfLHADLFREHQLRpPKGILLYGPPGCGKTLIAKAVANSLAKKI 299
                 455554111457899999986369***********************9987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.8e-05    0.0072       2      75 ..     274     351 ..     274     364 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.8e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg...avllssdtlrr.rlfgtdqqsktdytrvldrlyqilnelarkalsagrnvil 75 
                 +ll G+pG+GK+  a+ +++ l+   a++l +    +  l  ++++ +++y   ++r ++ ++++ar+++ +g +vi+
  KIR61677.1 274 ILLYGPPGCGKTLIAKAVANSLAkkiAERLGKERHTSfFLNIKGPELLNKYVGETERHIRLIFQRAREKAGEGTPVIV 351
                 6789***************99999*******99855423444777788889999999999999********9999998 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   4.3   2.5e-05    0.0065      86     150 ..      13      77 ..       8      89 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.5e-05
  Jnk-SapK_ap_N  86 qweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklheretellkklkel 150
                     we+e+ +l+++v+ l+ee   +  k+ ++  ++ +lee+ a  + + ++l+e+ + l+ +lke 
     KIR61677.1  13 RWEKEAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEA 77 
                    6************************************************************9996 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.2e-05    0.0057      25      48 ..     274     297 ..     271     319 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.2e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllpp 48 
                   +ll+GppG+GKt++ak++++ l++
    KIR61677.1 274 ILLYGPPGCGKTLIAKAVANSLAK 297
                   89***************9987775 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00066      0.17      22      47 ..     273     298 ..     265     317 .. 0.81
   2 ?    2.2   0.0      0.56   1.4e+02      93     131 ..     319     360 ..     296     395 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00066
    ATPase_2  22 iyfiYGpegsGKtaLlkeiienledk 47 
                  +++YGp g+GKt + k +++ l +k
  KIR61677.1 273 GILLYGPPGCGKTLIAKAVANSLAKK 298
                 5789*********9999888887544 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.56
    ATPase_2  93 eilkeksklvfkaielllekikkkgkk...iiiiiDelqkli 131
                 e+l++   + ++ i l+++  ++k+ +   +i+++De+  + 
  KIR61677.1 319 ELLNKYVGETERHIRLIFQRAREKAGEgtpVIVFFDEMDSIF 360
                 445556666778888888888888888888999****98876 PP

>> HAP1_N  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.6   3.2e-05    0.0083     212     286 ..      19      93 ..      14     107 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.2e-05
      HAP1_N 212 seanqqiaelseelarkleelerqqeeissLlaqivdlqqklkelgveneelkqhLaaskeaqrqLtaELqdlqe 286
                 ++ ++q+a l+eela  + +l++  + + +L  ++   q +l +l+++ne l + L+ ++     L++E+  l +
  KIR61677.1  19 HDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEIDRLAQ 93 
                 56789****************************************************************988865 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   6.2     5e-05     0.013      62     132 ..      11      81 ..       3      86 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5e-05
        ADIP  62 irkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalqqiktqy 132
                   + e e   l++++  l+++l+  +r+l+ + +  rqle +l++++++l +++e ++rl ++l++ ++q 
  KIR61677.1  11 AARWEKEAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQI 81 
                 5666788888999999999***********************************************99995 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1         2   5.1e+02     123     154 ..      37      67 ..      14      78 .. 0.83
   2 !   13.2   0.0   0.00024     0.062       3      43 ..     274     316 ..     272     358 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 2
                 EEEEEECCCHHHHCTTSSCE..EEEE--TCCH CS
       NACHT 123 llltvrpralrdleeqleeaivlevegfsesr 154
                  +lt +pr +r+lee l+ +  ++++ ++e++
  KIR61677.1  37 RKLTESPRHVRQLEERLAAT-QAQLARLTENN 67 
                 578999*********99999.88888888776 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00024
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC..-SEEEEEETT CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqga..fklvFflslr 43 
                 ++l G++G+GKT  ++ +a  +a++  ++       +Ffl+ +
  KIR61677.1 274 ILLYGPPGCGKTLIAKAVANSLAKKIAERLGkeRHTSFFLNIK 316
                 7899**************9999987544332225778887766 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   8.6e-05     0.022      45      77 ..     266     303 ..     228     314 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.6e-05
       Rad17  45 kr.....iLLisGPsGCgkstvvkvLskelgiklrewl 77 
                 ++      +L+ GP+GCgk+ + k ++  l+ k+ e l
  KIR61677.1 266 HQlrppkGILLYGPPGCGKTLIAKAVANSLAKKIAERL 303
                 333355557889***************99999998865 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   0.00011     0.028      12      44 ..     267     298 ..     259     352 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00011
  Zeta_toxin  12 sqerPklillgGqpGAGKselaellkdelerqg 44 
                 + + Pk ill G pG+GK+ +a++++++l+ ++
  KIR61677.1 267 QLRPPKGILLYGPPGCGKTLIAKAVANSLA-KK 298
                 34789**********************994.33 PP

>> SOGA  Protein SOGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   5.4   0.00036     0.092       2      82 ..      18      85 ..      17      93 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00036
        SOGA  2 aaeLrrhLqfveeEaeLlrrslseleeenkqlteeLnkyksklgeeessleeeeeassdsskeaelkeeLklarlqineLs 82
                a++L  +  f +eE +L rr+l+e  ++ +ql+e L+  + +l + +++ e+             l   Lk ar qi +L+
  KIR61677.1 18 AHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQAQLARLTENNER-------------LVSTLKEARAQIVTLK 85
                679********************************99877776665544433.............3344444444444444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   2.7       1.8   4.7e+02     133     193 ..      23      89 ..       7      93 .. 0.53
   2 ?   11.8   0.0     0.001      0.26      19      87 ..     272     350 ..     259     413 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 1.8
      AAA_23 133 nlilflgqer.....feefelkdkkerleelekeleeledekkllekl.....eqekekekeleeleeele 193
                 ++++fl++e      +    l + +  +++le+ l   +++   l ++       +ke ++++ +l+ee+ 
  KIR61677.1  23 TQVAFLQEELalvrrK----LTESPRHVRQLEERLAATQAQLARLTENnerlvSTLKEARAQIVTLKEEID 89 
                 6666666666333220....133333555555555444443333333334444455677777777777776 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.001
      AAA_23  19 kgltlItGpNGaGKTTildAiklaLyget.prlsrks....grgfeksdveiesegkvkayveltfenkdgry......t 87 
                 kg+ l++Gp G+GKT i  A+   L  +  +rl++++      +++  +   +  g++++ ++l f++ +++        
  KIR61677.1 272 KGI-LLYGPPGCGKTLIAKAVANSLAKKIaERLGKERhtsfFLNIKGPELLNKYVGETERHIRLIFQRAREKAgegtpvI 350
                 555.99*******************999956666666444444444555556566999999***9998877656666552 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   4.0   0.00012     0.032     323     410 ..       9      93 ..       2      94 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00012
      DUF812 323 elkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlellpdaeeniekLqalveasaq 410
                  + ++ e+e ++l++q+  l+++++ ++ ++ +   +++q+ee l +++++ ++l+++   ++++++ l++a ++i  L+++++  aq
  KIR61677.1   9 SRAARWEKEAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQAQLARLTEN---NERLVSTLKEARAQIVTLKEEIDRLAQ 93 
                 45566799999**********************************9999988888765...689*******************98776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0    0.0003     0.077       1      22 [.     274     295 ..     274     330 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.0003
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 Ill G+pG+GKt +ak+++++l
  KIR61677.1 274 ILLYGPPGCGKTLIAKAVANSL 295
                 99****************8876 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   4.4   0.00018     0.046       6      95 ..       5      91 ..       2      93 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00018
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHH CS
  Laminin_II  6 aeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnisei 95
                ++a++ a+  ++  ++ls+++  ++e+l  ++r++ e   +v+++ + ++  + +   L+++ ++L++ lke + + +    l+++i+++
  KIR61677.1  5 DDADSRAARWEKEAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVT---LKEEIDRL 91
                689999***************************************************************9998888888...99999986 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00034     0.087      47      72 ..     271     296 ..     257     302 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00034
   IstB_IS21  47 kenivllGpsGvGKshlaialgveav 72 
                  ++i+l Gp+G GK+ +a a++ + +
  KIR61677.1 271 PKGILLYGPPGCGKTLIAKAVANSLA 296
                 5789****************998765 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   3.8   0.00017     0.044      66     141 ..      17      89 ..       7      94 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00017
     UPF0242  66 ekskleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelklele 141
                 e++ l+++ a+l+e+    +  + +l e+    ++L+e+l+a + +l+rl+e+n+ L + l+++ +++  lk e++
  KIR61677.1  17 EAHDLSTQVAFLQEEL---ALVRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEID 89 
                 4555666666666555...99999********************************************99999986 PP

>> RILP  Rab interacting lysosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.7    0.0003     0.077      11      46 ..      17      52 ..      16      67 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.0003
        RILP 11 ERNeLKaqlfllqEELayYkseeleeernsselree 46
                E ++L +q+ +lqEELa+ ++++ e++r+  +l+e+
  KIR61677.1 17 EAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEER 52
                5678899******************99999987543 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   4.9   0.00019     0.048      68     142 ..      11      92 ..       2      95 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00019
    CALCOCO1  68 reeldrerkelesrveelkeelkesre.......kveeleekqkelerlseelaeeksalleakeesearirELEeDiktlt 142
                   ++++e ++l+ +v+ l+eel+ +r        +v++lee+  ++++  + l+e++++l++  +e +a+i  L e+i  l+
  KIR61677.1  11 AARWEKEAHDLSTQVAFLQEELALVRRkltesprHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEIDRLA 92 
                 3567777777777777777777777762222222555555555555555566666666666666666666666666666655 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.3   0.00054      0.14      18      79 ..      15      80 ..       3      81 .. 0.90
   2 ?   -0.5   0.0       5.4   1.4e+03      26      42 ..     237     253 ..     215     255 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00054
        Med9 18 nlsskdletktgelrhkLkkarelirelpg....idrsveeqeaeieeleeqlakKrelLkkyknr 79
                +++++dl+t++++l+  L  +r  + e p     +++  +  +a+++ l e++++  + Lk+ + +
  KIR61677.1 15 EKEAHDLSTQVAFLQEELALVRRKLTESPRhvrqLEERLAATQAQLARLTENNERLVSTLKEARAQ 80
                5899*************************999999999999**************99999998876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 5.4
        Med9  26 tktgelrhkLkkareli 42 
                 t +g+l+ +++++r ++
  KIR61677.1 237 TDIGGLQSQIEQIRDAV 253
                 34555555555555554 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   9.8   0.00022     0.056      68     142 ..      17      91 ..       1      94 [. 0.47

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00022
       ATG16  68 snskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdr 142
                 ++ + s++++ l+++la +r  l+e+ +   +l++rl +++++l++l e+ ++  ++l+e++a++ +l+++++++
  KIR61677.1  17 EAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEIDRL 91 
                 223344555555555555555555555555555555555555555555555555555555555555555555443 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00035     0.091       5      76 ..     274     359 ..     271     405 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00035
      AAA_14   5 lvitGaRrvGKTtllkqlikell........vkkesilyinldderdkkla..dpekllelileklke....ekktylflDEiqev 76 
                 +++ G+  +GKT ++k ++++l          ++   +++n++ +++ ++   ++e+ ++li+++++e        ++f+DE+  +
  KIR61677.1 274 ILLYGPPGCGKTLIAKAVANSLAkkiaerlgKERHTSFFLNIKGPELLNKYvgETERHIRLIFQRAREkageGTPVIVFFDEMDSI 359
                 7899************99988878889998777777888899999885544234446666666663334564556679****9776 PP

>> Vir_act_alpha_C  Virulence activator alpha C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.3    0.0005      0.13      20      60 ..      45      89 ..      22      93 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0005
  Vir_act_alpha_C 20 lieeLerrreeheekLaeyeeieerl....eeargqylvLrrgir 60
                      +++Le+r+++ +++La+++e +erl    +ear q ++L+  i+
       KIR61677.1 45 HVRQLEERLAATQAQLARLTENNERLvstlKEARAQIVTLKEEID 89
                     5789*************************999********98776 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.3   0.00026     0.067     208     289 ..      12      92 ..       2      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00026
       FAM76 208 ksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelkaellekekelreklkelekeakekieklekkirell 289
                 +  +++  d   +v+ L+ee+a  +++l++   ++ + +  +++ +a+l +  + ++e+l ++ kea+++i +l+++i +l 
  KIR61677.1  12 ARWEKEAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQAQLARLTE-NNERLVSTLKEARAQIVTLKEEIDRLA 92 
                 4667788899999***********************************999865.5678999999*************9986 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.9       4.1   1.1e+03     126     139 ..      42      55 ..       3      92 .. 0.43
   2 ?   10.8   0.0     0.001      0.26      36      59 ..     274     297 ..     263     393 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 4.1
      AAA_25 126 ltadvdaleaaiee 139
                  ++ v++le+++ +
  KIR61677.1  42 SPRHVRQLEERLAA 55 
                 22233333333322 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.001
      AAA_25  36 allaGapgtGKttlaldlalavat 59 
                 +ll+G+pg+GKt +a  +a ++a+
  KIR61677.1 274 ILLYGPPGCGKTLIAKAVANSLAK 297
                 69*************999988884 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00087      0.22      17      80 ..     226     298 ..     209     303 .. 0.64
   2 ?   -2.5   0.0         9   2.3e+03     140     156 ..     389     405 ..     370     409 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00087
      DUF815  17 epveevdevklddLvgidkqkealvente.qfl........eglpannvLLwGarGtGKSslvkallneyaee 80 
                   +eev  v+ +d+ g+++q e++ + +e  fl        + +p + +LL+G  G+GK  + ka+ n++a++
  KIR61677.1 226 LVLEEVPDVDYTDIGGLQSQIEQIRDAVElPFLhadlfrehQLRPPKGILLYGPPGCGKTLIAKAVANSLAKK 298
                 345666667777777777777777666542233111111113468899*******************999876 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 9
      DUF815 140 penvliyaTsNrRhLlp 156
                  env++   sNr +++ 
  KIR61677.1 389 LENVIVIGASNREDMID 405
                 589*********99885 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00037     0.095      30      60 ..     268     298 ..     257     304 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00037
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkldke 60 
                 l+  k +ll+Gp G+GKt+i+k + ++l k+
  KIR61677.1 268 LRPPKGILLYGPPGCGKTLIAKAVANSLAKK 298
                 5566889*****************9999854 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.1     8e+02     207     236 ..      28      57 ..      23      72 .. 0.86
   2 ?   10.4   0.0     0.001      0.26     115     137 ..     272     294 ..     263     297 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.1
   Parvo_NS1 207 snvditlvvsgntssvahanalkdrmlkln 236
                 +++++ lv++  t+s  h+++l++r  +++
  KIR61677.1  28 LQEELALVRRKLTESPRHVRQLEERLAATQ 57 
                 5778999999999***********987765 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.001
   Parvo_NS1 115 ntvwfyGpantGktnlaeaIaka 137
                   +++yGp+ +Gkt +a+a a+ 
  KIR61677.1 272 KGILLYGPPGCGKTLIAKAVANS 294
                 5699***************9986 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00069      0.18     340     412 ..      19      92 ..      10     125 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00069
        FapA 340 keleeeleeleeeleklkkk.ikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskk 412
                 ++l +++  l+eel  +++k  ++ +  ++ ++  +  + ql++l+e+ e+l++ l+e ++++ +lkee+++ +
  KIR61677.1  19 HDLSTQVAFLQEELALVRRKlTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEIDRLA 92 
                 5555555555666655555532333333334445566789******************************9984 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1    0.0017      0.43       5      22 ..     274     291 ..     271     301 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0017
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 il+yGp+g GKT +ak  
  KIR61677.1 274 ILLYGPPGCGKTLIAKAV 291
                 89************9977 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       8.7   2.2e+03      55      92 ..      19      60 ..       4      97 .. 0.47
   2 ?   10.2   0.0    0.0031      0.79      10      67 ..     270     338 ..     264     349 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 8.7
                HHCCHCEEEE-SS--S-TTSBHHHH.....HHHTCHHHHHHHS CS
                xxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxx RF
    ABC_tran 55 eslrkeigvlpqepqlfpeltvren.....esdeeiekalskl 92
                + l+ ++++l++e  l +++ + e+     + +e++++  ++l
  KIR61677.1 19 HDLSTQVAFLQEELALVRRK-LTESprhvrQLEERLAATQAQL 60
                33444444444444444433.2222344442222222222222 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0031
                 TTSEEEEEESTTSSHHHHHHHHTTSS--.SEEEE..........EETTCEGGGB-HHHCCHCEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagllkp.teGei..........lldgkdlkeqeleslrkeigvlpqe 67 
                 + + + + G+ G+GK+ ++k++a+ l +  ++++          +++g +l ++   +++++i+ ++q 
  KIR61677.1 270 PPKGILLYGPPGCGKTLIAKAVANSLAKkIAERLgkerhtsfflNIKGPELLNKYVGETERHIRLIFQR 338
                 55668899*************998765523444444455555555555555556666666666666665 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5    0.0011      0.29      28      99 ..      16      90 ..      13      94 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0011
                CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHCCCHHHHHHHC CS
   Fib_alpha 28 kyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkd....ndnvikksskeleeeilrlketida 99
                k  +d++++++ l++el+ ++++ +e+ ++v+++++ l+++q++ +     n+++++ +++  + +i++lke+id+
  KIR61677.1 16 KEAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQAQLARltenNERLVSTLKE-ARAQIVTLKEEIDR 90
                6778999**********************************99977644324555555555.55699****99986 PP

>> ZnuA  Zinc-uptake complex component A periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1     0.001      0.26     109     167 ..      35      92 ..      22     112 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.001
                 HHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGTEGEEEESSSTTHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ZnuA 109 iadaLveadpanadtyeanaaayiekLeeldaeireelaeipeekrklvtthdafgyla 167
                 ++ +L+e  p + +++e+++aa +++L +l ++ ++ +++++e++ ++vt ++    la
  KIR61677.1  35 VRRKLTE-SPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEIDRLA 92 
                 6677777.899***************************************998887777 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   5.7   0.00076      0.19     234     352 ..       3     117 ..       1     124 [. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00076
        FUSC 234 llsslarllarlraeeaaavpelaallaelaaleaaaaaealeaalaalrarlralrraleadadtaalllarlaellaelaqllaslraleaaiaaar 332
                 + +   ++ ar+ +e ++   ++a l +ela    ++   + + ++++l++rl+a++++l+  ++ +++l+++l+e  a+ + l +++++l+++ +   
  KIR61677.1   3 RSDDADSRAARWEKEAHDLSTQVAFLQEELAL--VRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEIDRLAQPPS--G 97 
                 56666777888888888887776667777777..45678889999************************************************966..5 PP

        FUSC 333 raerlarhrdhlaallnglr 352
                     la h d ++ ++ g r
  KIR61677.1  98 YGVFLAAHEDGTVDVFTGGR 117
                 77777888877777776665 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0011      0.29      23      46 ..     274     297 ..     262     302 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0011
                 EEEEESTTSSHHHHHHHHCCSHCC CS
      NB-ARC  23 valvGmgGvGKttlakqilnksde 46 
                 + l+G +G+GKt +ak + n++++
  KIR61677.1 274 ILLYGPPGCGKTLIAKAVANSLAK 297
                 679***************998655 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   6.2    0.0012      0.31      50     125 ..      13      87 ..       6      94 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0012
  Lebercilin  50 kyedteaeLpqllarhneEvrvlrerlRksqekerelekklkekeaellrlkdklkklkk.LsedknLaereeLqkk 125
                 + e++  +L+  +a  +eE+  +r +l +s  ++r+le++l  ++a+l rl +++++l + L e++      +L+++
  KIR61677.1  13 RWEKEAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVStLKEAR-A-QIVTLKEE 87 
                 678888999999999999999999999999999999999999999999999999999988454444.2.34455554 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.7   0.00087      0.22      15      66 ..      20      75 ..      16      93 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00087
     NPV_P10 15 avddkVdalqqqv....ddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiLn 66
                +++++V  lq+++     +++e  + v +l+e+L a +aqLa l ++ e   ++L 
  KIR61677.1 20 DLSTQVAFLQEELalvrRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLK 75
                78999******99555555666667899**************99987777666665 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   9.7    0.0013      0.34      45     122 ..      14      91 ..       1      93 [. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0013
      APG6_N  45 qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsl 122
                 +++e  +l  +++ l++e +   ++L e  ++ ++le+ laa +++l++l e++er ++  +e + +   l+ee d l
  KIR61677.1  14 WEKEAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEIDRL 91 
                 67788899999999*****************************************************99999999887 PP

>> Myosin_tail_1  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.4    0.0011      0.28     451     535 ..       6      90 ..       2      94 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
  Myosin_tail_1 451 eaegksiklskdvsslesqlqDtqellqeetrqkLalssr.lrqleeeknalkeqleeeeeakknvekqlstlqaqlsdlkkklee 535
                    +a++++ + +k++  l+ q+   qe l    r+kL+ s r +rqlee  +a + ql   +e+++++   l+ ++aq+  lk  ++ 
     KIR61677.1   6 DADSRAARWEKEAHDLSTQVAFLQEELAL-VRRKLTESPRhVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEIDR 90 
                    67888888888888888888888777764.56677666543888888888888888888888888888888888888888877765 PP

>> DUF773  CDK5 regulatory subunit-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.1    0.0013      0.33     428     481 ..      39      92 ..      21      95 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
      DUF773 428 iktspryvdrlvasLeqklkqeeklkeklkdleekreelqeelselepkleklv 481
                 + +spr+v +l++ L   ++q ++l+e+ ++l +  +e++ ++ +l+ +++ l 
  KIR61677.1  39 LTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEIDRLA 92 
                 789********************************************9999876 PP

>> CEP63  Centrosomal protein of 63 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   6.5    0.0014      0.36      24      90 ..      12      78 ..       7      93 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0014
       CEP63 24 seWeaqtraletrlkireeeLasarnaldekhkEvgllrqqleelekekqelvakyeqqlqklreel 90
                + We++ + l t++   +eeLa +r  l e  + v+ l+++l  ++++   l+++ e+ ++ l+e+ 
  KIR61677.1 12 ARWEKEAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEAR 78
                68********************************************999999999999998888753 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.7    0.0016      0.42      14      95 .]       6      87 ..       2      87 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0016
        BRE1 14 elseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLkelekefvrklkeleke 95
                ++++ +    ke ++l  +++ l+ e a  ++k  +  r+ ++le  l + +++l++ +e  e+L  + ke ++++  l++e
  KIR61677.1  6 DADSRAARWEKEAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEE 87
                66677777889****************************************************************9988765 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   6.6    0.0018      0.47     176     255 ..      11      86 ..       3      93 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0018
        Spc7 176 kaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaer 255
                  a+ e+e+++l ++++      +eeL+ +r++l+e    +++++++la  q+ql++l+e+ e l +  +e++++i   ++
  KIR61677.1  11 AARWEKEAHDLSTQVA----FLQEELALVRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKE 86 
                 4455555555555443....346677777777777777777777777777777777777777777777777766655443 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.7    0.0027      0.69      37     106 ..       9      78 ..       1      93 [. 0.44

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0027
     DUF3450  37 kkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpllekmi 106
                 ++  ++++e+ +l+ ++  l+eel+  + +  +  r v+++e+++a  + q+++++e +++lv  l++  
  KIR61677.1   9 SRAARWEKEAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEAR 78 
                 3444444444444444444444444444444444444444444444444444444444444444444332 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   7.0     0.011       2.9      41     125 ..      10      91 ..       4      93 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.011
         GAS  41 keernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdel 125
                 +++r eke +++s++   l+e+L  +++++ e  +++++ e+   +l++++a+l +l+++ ++l    +  + ++ ++++e+d+l
  KIR61677.1  10 RAARWEKEAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEE---RLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEIDRL 91 
                 566666666666666666666666666666655555555554...4444444444444444444444444455555555555544 PP

>> BCAS2  Breast carcinoma amplified sequence 2 (BCAS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.4    0.0023      0.59     123     201 ..      12      93 ..       9      96 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0023
       BCAS2 123 naWrvhneqleaelkklekeleetkeeieevnrq.RkseQe..eageeLksleekWrelvsknleieaaceeleaeieelkr 201
                   W+ + ++l+++++ l++el+ ++++ +e  r+ R+ e    +++++L++l e+  +lvs+  e  a++++l++ei++l +
  KIR61677.1  12 ARWEKEAHDLSTQVAFLQEELALVRRKLTESPRHvRQLEERlaATQAQLARLTENNERLVSTLKEARAQIVTLKEEIDRLAQ 93 
                 579*********************999877665437766642266889******************************9976 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   6.3     0.016         4      38     119 ..      11      89 ..       3      94 .. 0.40

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.016
    KASH_CCD  38 nakLteeieeLkkklkstQqalqkaklleeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikllaekd 119
                  a+   e ++L +++  +Q  l    l+   l e  + v++leE+ a  +aq  +l  +n+ L++ +++   ++  l+ e+d
  KIR61677.1  11 AARWEKEAHDLSTQVAFLQEEL---ALVRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEID 89 
                 3333344444444444444332...233344444444444444444444444444444444444444444444444444433 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   5.2    0.0025      0.65      16      80 ..      29      93 ..      15      94 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0025
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2 16 rnvtrlLerqLtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnq 80
                ++   l+ r+Lt++  ++r+ e   a+ +  +  L++  e+ ++  ++++a++  l++ei +L+q
  KIR61677.1 29 QEELALVRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEIDRLAQ 93
                6777899*******************************************************998 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   7.1    0.0063       1.6       3      79 ..      14      90 ..      12      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0063
         ERM  3 aerekreleerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekek 79
                 e+e + l  +   lqee +  +++L+es + +++L+e++   + +  +L+++++++    ++ + +    +ee ++
  KIR61677.1 14 WEKEAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEIDR 90
                5999999999**********************************999999999999888877777776666655555 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.4     0.016       4.2       7      87 ..       3      86 ..       1      93 [. 0.67

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.016
      CENP-H  7 qrdelssellklsqelrelqeeltevekenlrlkrknrelaaellelakekesek...eklkeelekleaelkksrqrwrvvkn 87
                + d++ s+++++++e ++l  +++ +++e   ++rk  e  +++++l++  ++++    +l+e  e+l + lk++r+++ ++k+
  KIR61677.1  3 RSDDADSRAARWEKEAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQaqlARLTENNERLVSTLKEARAQIVTLKE 86
                566777777777777777777777777777777777777777775444444444434666777777777777777777777776 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   5.9      0.16        41      21      51 ..      48      78 ..      41      95 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.16
                HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC 21 qlkqeiaalqaelaklkaeneeLeaevkdLk 51
                ql++ +aa qa+la+l++ ne+L + +k+ +
  KIR61677.1 48 QLEERLAATQAQLARLTENNERLVSTLKEAR 78
                6666666666666666666666665555543 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.1     0.011       2.8      63     134 ..      12      83 ..       2      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.011
       Atg14  63 knkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqia 134
                  +  + + +l +++a l+e+l++++ kl++  + +++  ++la+ +++l++ ++  e l + l+e+r+++++
  KIR61677.1  12 ARWEKEAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVT 83 
                 4555677889999999**************************************999999999999987765 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   6.0    0.0097       2.5       7      60 ..      36      91 ..      12      93 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0097
  ABC_tran_CTD  7 qreleeleaeIeaLEeeiaeleaeladpelysdpek....laelsaeleeleaeLeel 60
                  +r+l e +++  +LEe++a+ +a+la  +  ++ e+    l+e+ a++ +l++e+++l
    KIR61677.1 36 RRKLTESPRHVRQLEERLAATQAQLARLT--ENNERlvstLKEARAQIVTLKEEIDRL 91
                  57888999999**************9665..666554445888888899999998876 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.9     0.023       5.8       5      74 ..      20      87 ..       9      92 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.023
  Uso1_p115_C  5 eleseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeekek 74
                 +l +++a l++e +    +l ++ + +++le+   ++a ++q  +l ++n++l + l+++ra++ + ke+
   KIR61677.1 20 DLSTQVAFLQEELALVRRKLTESPRHVRQLEER--LAATQAQLARLTENNERLVSTLKEARAQIVTLKEE 87
                 455566667777778888888888888888888..9999999********************99887775 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   1.0       0.1        26      10      54 ..       9      53 ..       2      55 .. 0.81
   2 ?    8.6   4.0     0.011       2.8      17      55 ..      44      82 ..      38      95 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.1
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXX CS
        SlyX 10 iklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleess 54
                ++ a  e+   +L+ +va  q++++  +r+l +  +++++lee+ 
  KIR61677.1  9 SRAARWEKEAHDLSTQVAFLQEELALVRRKLTESPRHVRQLEERL 53
                677778888889999999999999999999999999998888865 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.011
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX 17 dtieeLndvvaeqqqqidrlqrqlrllaerlkeleessg 55
                + + +L + +a+ q q++rl++  ++l+  lke++++  
  KIR61677.1 44 RHVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIV 82
                78999**************************99998865 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.3      0.12        31       5      39 ..      10      44 ..       6      52 .. 0.82
   2 ?    4.6   1.3      0.15        38       2      41 ..      49      88 ..      44     121 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.12
       Spc24  5 ekfriakelsdleselesleselaelkeeleelee 39
                +  r  ke++dl +++  l++ela  +++l+e  +
  KIR61677.1 10 RAARWEKEAHDLSTQVAFLQEELALVRRKLTESPR 44
                5667889999*************999999998765 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.15
       Spc24  2 ldnekfriakelsdleselesleselaelkeeleeleees 41
                l++++ +++ +l  l+++ e+l s+l+e ++++ +l+ee 
  KIR61677.1 49 LEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEI 88
                3444444444555555555555555555555555555544 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   5.5      0.19        48      12      71 ..      14      79 ..       6      93 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.19
      Cnn_1N 12 LkKENFdLKLriyfLeerleklse......eqkeellkenielkveveslqkelkekkkllreaek 71
                 +KE  dL  +++fL+e+l   +       +++++l++ +   + +++ l+  ++++   l+ea  
  KIR61677.1 14 WEKEAHDLSTQVAFLQEELALVRRkltespRHVRQLEERLAATQAQLARLTENNERLVSTLKEARA 79
                578889999999999998776666666688777777777777777777777777777777666654 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2      0.32        81      26      62 ..       4      40 ..       1      42 [. 0.85
   2 ?    5.1   2.1      0.11        29      32      63 ..      45      76 ..      40      84 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.32
         CLZ 26 qkeleekverLessLeaLqtrlarLlaeyessqrkLk 62
                 +++++++ r e++   L t++a L +e+  + rkL+
  KIR61677.1  4 SDDADSRAARWEKEAHDLSTQVAFLQEELALVRRKLT 40
                5788899999999999999999999999999999986 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.11
         CLZ 32 kverLessLeaLqtrlarLlaeyessqrkLkq 63
                 v++Le++L a q +larL ++ e   ++Lk+
  KIR61677.1 45 HVRQLEERLAATQAQLARLTENNERLVSTLKE 76
                68999999999999999999999988888875 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.9     0.016       4.1      33      80 ..      45      92 ..      40      94 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.016
      CENP-Q 33 ekaaleaqLspelhslelLeaeiekeeralerdyeaLreLeknakaea 80
                + ++le  L++++ +l+ L ++ e+++ +l++  +++ +L++++ ++a
  KIR61677.1 45 HVRQLEERLAATQAQLARLTENNERLVSTLKEARAQIVTLKEEIDRLA 92
                5689*************************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1125  (0.0627475); expected 358.6 (0.02)
Passed bias filter:                      977  (0.0544927); expected 358.6 (0.02)
Passed Vit filter:                       265  (0.0147805); expected 17.9 (0.001)
Passed Fwd filter:                        71  (0.00396006); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              70  [number of targets reported over threshold]
# CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.50
# Mc/sec: 3590.93
//
Query:       KIR61678.1  [L=505]
Description: Pup deamidase/depupylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     2e-188  626.9   0.0   2.3e-188  626.7   0.0    1.0  1  Pup_ligase  Pup-ligase protein


Domain annotation for each model (and alignments):
>> Pup_ligase  Pup-ligase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  626.7   0.0  1.3e-192  2.3e-188       1     439 [.       5     460 ..       5     461 .. 0.99

  Alignments for each domain:
  == domain 1  score: 626.7 bits;  conditional E-value: 1.3e-192
                 --EEEEEE-EEEECT-TTEEEE-HHHHHHHHHHHHGGGEE........--------------CHHHHHHHS-S--.........EEEETTS-EEEEETT CS
  Pup_ligase   1 rimGiEtEYgilvpaepeaeslspeelarelvaayaaaea........wdyeeesplrdargfelerararssql.........nvflanGarlYvdga 82 
                 rimG+E EYgi+vp++++a   +p+++++++v+ay a           wdyeeesplrdargf+ + a+++++++         nv+l+nGarlYvd+a
  KIR61678.1   5 RIMGTEVEYGISVPGQAGA---NPMVTSSQVVNAYGARPElnrggrarWDYEEESPLRDARGFTYSGAAYDPAEAladedlglaNVILTNGARLYVDHA 100
                 9************887777...*************8888799*******************************999*********************** PP

                 EEEEE---BSSHHHHHHHHHHHHHHHHHHHHHHHHCCC.-EEEEESSSB-TTS-B--EEEEEEEETTS-HHHHHHCHHHHHHHCHHHH---EEEETTTS CS
  Pup_ligase  83 hpEystpEvtspldlvaydrAgdeilreaaeeaeeelg.gevklykNnvDskGasYGchENYlvrravpfeelakkLlpflvtRqiitGaGrvglgeeg 180
                 hpEystpEvt+pld+v +d+Ag+++++eaa++a++ +g ++++lykNn+D+kGasYG+hENYl+rr++pf ++++ L+pf+vtRqi++GaGrvg+g++g
  KIR61678.1 101 HPEYSTPEVTNPLDVVKWDKAGERVMAEAARRAATIPGtQPIHLYKNNTDNKGASYGAHENYLMRRQTPFADIVAYLTPFFVTRQIVCGAGRVGIGQDG 199
                 *********************************999999************************************************************ PP

                 -CEEEES-SSHHHCCCCCCSSSTTSEECEES-S--SS-TTTEEEEEE------SSHHHHHHHHHHHHHHHHHHHCT---S---BSSCCCCHHHHHC-TT CS
  Pup_ligase 181 eeagFqlsqrAdfieeevslettleRpiintrdEphadaskyrRLhvivgDsnlsevatllkvgttalvLdlieagkelpdleladpvaalrevsrdlt 279
                    gFq+sqrAdf+e ev+lettl+RpiintrdEphada+kyrRLhvi+gD+nlse++t+lkvgttal+L +ie+++  pdl +adpv++lr+vs+d++
  KIR61678.1 200 GASGFQISQRADFFEVEVGLETTLKRPIINTRDEPHADADKYRRLHVIIGDANLSEISTYLKVGTTALILTMIEQKALGPDLGIADPVSELRAVSHDPS 298
                 *************************************************************************************************** PP

                 S--EEEBTTS-EEEHHHHHHHHHHHHHHHHHHHHGGCS..HHHHHHHHHHHHHHHHHC-SCCCTTT-HHHHHHHHHHHHHHHHT--TT-HHHHHHHHHT CS
  Pup_ligase 280 lkatveladgreltaleiqrayleavrkfleeeeeeee..etkevlelWeevldaleedpqaladridWvaKlrLleelrereglswddpklkalDlqY 376
                 lk+ ++l+dgr+ltal++q+ay+e+v++f+++++ ++   +t++vl++We+vld+l +d+ ++ad++dWvaKlrLle++rere+l w ++kl+ +DlqY
  KIR61678.1 299 LKHLMRLRDGRRLTALDVQWAYFERVSSFVDDRYGADVdeQTADVLDRWESVLDRLGRDAFECADELDWVAKLRLLEGYREREKLGWGSHKLQLVDLQY 397
                 *********************************9988788*********************************************************** PP

                 TB-STTTSHHHHHHHCTSS--SS-HHHHHHHHHS--SSSTHHHHHHHHHHHHHHEEEEESSEE CS
  Pup_ligase 377 hdirpekglfarLvargrverlvteeeieravtepPadtrAalRgelvrefaeevvavdWdsv 439
                 +d+rpekgl++rLv+rg++++l+t+e+ ++a+tepP+dtrA++Rg++++++a+evva++Wdsv
  KIR61678.1 398 SDVRPEKGLYHRLVQRGSMKTLLTDEQTRTAMTEPPEDTRAYFRGRCLAQYASEVVAASWDSV 460
                 *************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3953.40
//
Query:       KIR61679.1  [L=71]
Description: ubiquitin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-29  102.8   5.8    1.5e-29  102.6   5.8    1.0  1  Pup             Pup-like protein
     0.0055   16.6   0.3     0.0061   16.5   0.3    1.1  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
  ------ inclusion threshold ------
      0.011   15.8   0.9      0.013   15.4   0.9    1.1  1  DUF2205         Short coiled-coil protein
      0.014   14.0   0.5      0.015   13.9   0.5    1.0  1  TH1             TH1 protein
      0.016   15.7   1.3      0.019   15.4   1.3    1.1  1  HSCB_C          HSCB C-terminal oligomerisation domain
      0.064   13.9   0.6      0.072   13.8   0.6    1.1  1  PMC2NT          PMC2NT (NUC016) domain
      0.067   13.3   1.9      0.067   13.3   1.9    2.2  2  DUF5132         Protein of unknown function (DUF5132)


Domain annotation for each model (and alignments):
>> Pup  Pup-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   5.8     6e-33   1.5e-29       1      68 []       4      71 .]       4      71 .] 0.96

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 6e-33
         Pup  1 kdtggqeqasrsk..eeveeaeaeaeassevkerkeelsedvDdlLDeIDevLEeNAeeFVrsfvQKGGq 68
                +d+ggq+q+++++  ee+e++++ea  ++ev+er++e++edvDdlLDeID+vLEeNAeeFVr++vQKGG+
  KIR61679.1  4 RDSGGQSQSGKARqgEEIEDVTTEA--NPEVAERHAEITEDVDDLLDEIDSVLEENAEEFVRGYVQKGGE 71
                79******9998888999***9998..******************************************7 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.3   2.4e-06    0.0061      37      84 ..      12      59 ..       7      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.4e-06
                    HHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHH CS
  Apolipoprotein 37 elrarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelre 84
                    + +ar ++e+e+v+    p ++e ++++++ +++l  ++++ +ee +e
      KIR61679.1 12 SGKARQGEEIEDVTTEANPEVAERHAEITEDVDDLLDEIDSVLEENAE 59
                    556777899999999999999999999999999999999999988766 PP

>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.9   5.3e-06     0.013       5      46 ..      16      57 ..      12      60 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.3e-06
     DUF2205  5 rnsedveklerearerLqqqakeLqssLqaLaervdeVkeeh 46
                r+ e++e + +ea  ++ ++  e+ +  ++L++ +d+V ee+
  KIR61679.1 16 RQGEEIEDVTTEANPEVAERHAEITEDVDDLLDEIDSVLEEN 57
                789**************************************8 PP

>> TH1  TH1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.5     6e-06     0.015      11      67 ..      13      70 ..       4      71 .] 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6e-06
         TH1 11 eeas.geetraeeseaaedllenkeevleeclekfsekDyimepgiidqlkryvqaGG 67
                ++a+ gee ++   ea+ ++ e ++e+ e++ + + e D+++e ++ + ++ yvq GG
  KIR61679.1 13 GKARqGEEIEDVTTEANPEVAERHAEITEDVDDLLDEIDSVLEENAEEFVRGYVQKGG 70
                34443677788888899999*************************************9 PP

>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   1.3   7.5e-06     0.019      14      57 ..      19      60 ..      18      68 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.5e-06
                HHHHCGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHH CS
      HSCB_C 14 Eeleeaeeaadkeeleelkaeveerieeleaeleeafekkdlea 57
                Ee+e++  +a+  e++e +ae++e +++l++e+++ + +++ e+
  KIR61679.1 19 EEIEDVTTEAN-PEVAERHAEITEDVDDLLDEIDSVL-EENAEE 60
                9*****66645.*************************.445554 PP

>> PMC2NT  PMC2NT (NUC016) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.6   2.8e-05     0.072      51      89 ..      19      56 ..       4      59 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.8e-05
      PMC2NT 51 seisassklededdveekfksvvdvvDsllEkadtcLDe 89
                +ei++  + e   +v e+ +++++ vD+ll+++d+ L+e
  KIR61679.1 19 EEIEDV-TTEANPEVAERHAEITEDVDDLLDEIDSVLEE 56
                333333.455556688899999************99988 PP

>> DUF5132  Protein of unknown function (DUF5132)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.9   2.6e-05     0.067      25      46 ..      15      35 ..       8      41 .. 0.87
   2 ?    1.2   0.9      0.16   4.1e+02      25      38 ..      37      50 ..      34      60 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.6e-05
     DUF5132 25 aevGEeLeDlvAEvkAEllAae 46
                a+ GEe+eD + E++ E +A++
  KIR61679.1 15 ARQGEEIEDVTTEANPE-VAER 35
                788**************.8886 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.16
     DUF5132 25 aevGEeLeDlvAEv 38
                ae+ E+ +Dl  E+
  KIR61679.1 37 AEITEDVDDLLDEI 50
                7999***9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1112  (0.0620224); expected 358.6 (0.02)
Passed bias filter:                      789  (0.0440069); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 565.16
//
Query:       KIR61680.1  [L=222]
Description: recombinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-23   81.8   0.2    2.5e-23   81.8   0.2    3.1  3  Endonuclease_7   Recombination endonuclease VII
    1.1e-05   25.9   9.4     0.0058   17.2   0.1    2.7  3  Stc1             Stc1 domain
    0.00091   19.6   7.3        1.4    9.4   0.2    3.2  3  Lar_restr_allev  Restriction alleviation protein Lar
  ------ inclusion threshold ------
       0.47   10.8   7.7         17    5.8   1.8    2.9  2  SBP              SBP domain
          1    9.5   5.2       0.31   11.2   0.3    2.4  2  His_Me_b4a2      His-Me finger endonuclease beta4-alpha2 doma
        2.2    8.4  14.6       0.33   11.1   0.6    3.8  4  UPF0547          Uncharacterised protein family UPF0547
        9.1    6.4  17.2    1.4e+02    2.6  10.5    4.0  2  DZR              Double zinc ribbon


Domain annotation for each model (and alignments):
>> Endonuclease_7  Recombination endonuclease VII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.2      0.48   1.2e+03      21      31 ..       7      17 ..       2      53 .. 0.62
   2 ?    1.0   0.2      0.16   4.1e+02      51      65 ..      92     106 ..      69     116 .. 0.78
   3 !   81.8   0.2   9.7e-27   2.5e-23       3      81 ..     120     193 ..     118     194 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.48
                    -TTSE-TTT-- CS
  Endonuclease_7 21 aqggkCaiCqe 31
                    a +++C  C+ 
      KIR61680.1  7 ASDKRCPQCER 17
                    56677777774 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.16
                     .EEEEEHHHHH.HHH CS
  Endonuclease_7  51 vRgllCgsCNtalGk 65 
                      R   C++C ++ G+
      KIR61680.1  92 GRHSYCKPCHNVRGR 106
                     688889999988886 PP

  == domain 3  score: 81.8 bits;  conditional E-value: 9.7e-27
                     XHHHH.-SHHHHHHTT---TTSE-TTT--EEETTS--EEEEE-TTT--.EEEEEHHHHH.HHHTTT-HHHH..HHHHHH CS
  Endonuclease_7   3 rleslyeitkeerkalleaqggkCaiCqerekektkalavDHdHktgkvRgllCgsCNtalGklkdspealrraidYle 81 
                     +l+++y++ ++e ++ll +qgg+CaiC       +   ++DHdH+tg+vRg+lC +CN  lG+++dsp +l rai+Yl+
      KIR61680.1 120 HLRRRYGVGQKEFDELLAEQGGVCAICGG-----ADPQHLDHDHRTGWVRGILCFNCNGGLGQFRDSPTRLARAITYLR 193
                     57899***********************6.....7788***************************************97 PP

>> Stc1  Stc1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   1.3   2.6e-05     0.066      52      84 ..       9      42 ..       5      43 .. 0.89
   2 !   17.2   0.1   2.3e-06    0.0058      54      84 ..      71     101 ..      45     102 .. 0.91
   3 ?   -2.2   0.1       2.5   6.3e+03      46      46 ..     159     159 ..     137     176 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.6e-05
                EEE-SSS--EEESTTS-HHHHHS.SS--.-HHHH CS
        Stc1 52 eleCsaCqktkpldeFsksqrrkpdaar.CkdCv 84
                  +C  C++ +p  eF ++ rr ++ a  Ck+C 
  KIR61680.1  9 DKRCPQCERLLPTTEFHRNRRRADGLAFyCKSCA 42
                568********************988878****7 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 2.3e-06
                 E-SSS--EEESTTS-HHHHHS.SS---HHHH CS
        Stc1  54 eCsaCqktkpldeFsksqrrkpdaarCkdCv 84 
                  C  C+ +kpl++F ++ + + +++ Ck C 
  KIR61680.1  71 WCPDCGDIKPLEDFPRTRKASGRHSYCKPCH 101
                 699***************************6 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.5
                 S CS
        Stc1  46 t 46 
                  
  KIR61680.1 159 R 159
                 1 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.2   0.00053       1.4       4      43 ..      10      50 ..       9      61 .. 0.68
   2 !    9.1   0.2   0.00066       1.7       3      36 ..      69     102 ..      67     123 .. 0.85
   3 ?    4.2   0.1     0.022        56       6      36 ..     143     173 ..     138     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00053
  Lar_restr_allev  4 kpCPfCgg.ravlersqrvvaeigqcvyCadCgastpwfki 43
                     k CP C    ++ e++ +++   g  +yC+ C a+ +++++
       KIR61680.1 10 KRCPQCERlLPTTEFHRNRRRADGLAFYCKSCAAARSEASR 50
                     6799998743556655555555566*********5444444 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00066
  Lar_restr_allev   3 LkpCPfCggravlersqrvvaeigqcvyCadCga 36 
                      Lk CP Cg  + le  +r+++  g   yC+ C  
       KIR61680.1  69 LKWCPDCGDIKPLEDFPRTRKASGRHSYCKPCHN 102
                      899******************9999****99976 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.022
  Lar_restr_allev   6 CPfCggravlersqrvvaeigqcvyCadCga 36 
                      C  Cgg++  + +++++ ++   + C +C+ 
       KIR61680.1 143 CAICGGADPQHLDHDHRTGWVRGILCFNCNG 173
                      999***9999999999998888999999987 PP

>> SBP  SBP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   4.2     0.023        60      41      60 ..      11      30 ..       4      55 .. 0.70
   2 ?    5.8   1.8    0.0067        17      40      61 ..      70      91 ..      38     108 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.023
         SBP 41 fCqqCsrfhelseFdgkkrs 60
                 C qC+r+ + +eF +++r 
  KIR61680.1 11 RCPQCERLLPTTEFHRNRRR 30
                6**************96653 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0067
         SBP 40 RfCqqCsrfhelseFdgkkrsC 61
                 +C  C+ +++l++F ++++  
  KIR61680.1 70 KWCPDCGDIKPLEDFPRTRKAS 91
                68*************9987743 PP

>> His_Me_b4a2  His-Me finger endonuclease beta4-alpha2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00012      0.31      11      48 ..       9      46 ..       6      49 .. 0.89
   2 ?   -0.7   0.6      0.61   1.6e+03      13      41 ..      71      99 ..      68     106 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
  His_Me_b4a2 11 kKiCNiCHiLkktedFeiNqtdakgrkvtRPSCreCRk 48
                  K C  C  L+ t++F  N   a+g      SC   R 
   KIR61680.1  9 DKRCPQCERLLPTTEFHRNRRRADGLAFYCKSCAAARS 46
                 68899********************9999999988775 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.61
  His_Me_b4a2 13 iCNiCHiLkktedFeiNqtdakgrkvtRP 41
                  C  C  +k  edF     +   ++  +P
   KIR61680.1 71 WCPDCGDIKPLEDFPRTRKASGRHSYCKP 99
                 56667777777777665544433333333 PP

>> UPF0547  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6   0.00013      0.33       1      12 [.      10      21 ..      10      22 .. 0.91
   2 ?   -0.7   0.1      0.62   1.6e+03       3       8 ..      38      43 ..      37      50 .. 0.78
   3 ?    5.4   0.1    0.0079        20      10      21 ..      65      76 ..      63      76 .. 0.85
   4 ?   -1.0   0.4      0.77     2e+03      16      21 ..     142     147 ..     136     147 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
     UPF0547  1 KvCPeCeakvPv 12
                K+CP+Ce+ +P+
  KIR61680.1 10 KRCPQCERLLPT 21
                99******9985 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.62
     UPF0547  3 CPeCea 8 
                C+ C+a
  KIR61680.1 38 CKSCAA 43
                888876 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0079
     UPF0547 10 vPvaaqfCphCG 21
                vP+  + Cp+CG
  KIR61680.1 65 VPTGLKWCPDCG 76
                8888899****9 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.77
     UPF0547  16 fCphCG 21 
                 +C+ CG
  KIR61680.1 142 VCAICG 147
                 7****9 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6  10.5     0.053   1.4e+02       1      39 [.      12      80 ..       8     108 .. 0.84
   2 ?    1.9   0.5     0.092   2.4e+02      14      35 ..     142     172 ..     133     176 .. 0.66

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.053
         DZR  1 CpqCgee............lppdarfCseCgtklkavaa..................edrCpsCgekvd 39
                CpqC++              +  a +C+ C ++ +++++                   + Cp Cg   +
  KIR61680.1 12 CPQCERLlpttefhrnrrrADGLAFYCKSCAAARSEASRrkrgisapkrapvpvptgLKWCPDCGDIKP 80
                99999999999998865544444569*****99987777999999999999999999999999997655 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.092
         DZR  14 fCseCgtk.lkavaa........edrCpsCg 35 
                 +C  Cg + ++   +         + C +C+
  KIR61680.1 142 VCAICGGAdPQHLDHdhrtgwvrGILCFNCN 172
                 6888876533333336677777778888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1632.80
//
Query:       KIR61681.1  [L=279]
Description: proteasome subunit beta [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-33  115.1   0.1    3.8e-33  114.6   0.1    1.2  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.1   2.1e-37   3.8e-33       3     182 ..      52     234 ..      50     237 .. 0.94

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 2.1e-37
                 HS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCTT CS
  Proteasome   3 kGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsgr 101
                 ++tt+v+i + +gvv+a+d+rat+g+ ++ ++ +eK++  d + +v++aG+a+ +  l+r +++e+++y+  +g  ++++  ++r+a+++ +++  + +
  KIR61681.1  52 HATTIVAISAAGGVVMAGDRRATMGNLIAQRD-IEKVHPADAYSLVGIAGTAGIGIELMRLFQVELEHYEKIEGAMLSLDGKANRLASMIRGNLGAA-M 148
                 89**************************6666.************************************************************9998.8 PP

                 TTTSEEEEEEEEETTT.....EEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSC CS
  Proteasome 102 rpfgvslliagvdeeg.....gpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsg 182
                 + + v  l+ag+d        + +++++d +G  +ee  + aiGsgs +a++al+k+++  l++++av+lav+al+ a+++d+++g
  KIR61681.1 149 QGLAVIPLFAGFDLAAadparAGRIFSFDVTGGPYEETGYDAIGSGSIFARSALKKRFRAGLSVDDAVRLAVEALYDAADDDTATG 234
                 89999999999994333455589**********************************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2067.32
//
Query:       KIR61682.1  [L=270]
Description: proteasome subunit alpha [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-31  109.2   0.3      2e-31  109.0   0.3    1.1  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.3   1.1e-35     2e-31       2     189 ..      25     208 ..      24     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 1.1e-35
                 HHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCT CS
  Proteasome   2 kkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsg 100
                 ++G+++v + +++gv+++a++ ++         t++K+++i+d+ig+a++G ++++++l+r   + a+l  l+y+r+  +  ++a+++a++++ +++++
  KIR61682.1  25 ARGRSAVVVSYSGGVLFVAENLSS---------TLHKVSEIYDRIGFAAVGRYNEFENLRRAGVRMADLNGLSYDRRDVTGLALANAYAQTLGAIFTEQ 114
                 79*****************94444.........589*************************************************************** PP

                 TTTTSEEEEEEEEETT.TEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHH....HHBTTSCSSEEEEE CS
  Proteasome 101 rrpfgvslliagvdee.ggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkeal....erdklsgknievav 189
                  +pf v++++a v  + ++  Ly+++++Gs+ +e   +a+G ++ea+ ++l+++ ++d++l eav++av al ++        ++  +++evav
  KIR61682.1 115 SKPFEVEICVAEVGATpEADALYRLTYDGSVNDEPGRMAMGGQAEAISGVLKSQHRPDMSLGEAVRVAVAALGSVGgeggAARTIAANQLEVAV 208
                 ************99653679**************99*****99*****************************9987322223345556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2348.06
//
Query:       KIR61683.1  [L=452]
Description: Pup--protein ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.6e-159  531.7   0.1   3.1e-159  530.7   0.1    1.4  1  Pup_ligase  Pup-ligase protein


Domain annotation for each model (and alignments):
>> Pup_ligase  Pup-ligase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  530.7   0.1  1.7e-163  3.1e-159       1     439 [.       4     422 ..       4     423 .. 0.98

  Alignments for each domain:
  == domain 1  score: 530.7 bits;  conditional E-value: 1.7e-163
                 --EEEEEE-EEEECT-TTEEEE-HHHHHHHHHHHHGGGEE--------------CHHHHHHHS-S--EEEETTS-EEEEE.TTEEEEE---BSSHHHHH CS
  Pup_ligase   1 rimGiEtEYgilvpaepeaeslspeelarelvaayaaaeawdyeeesplrdargfelerararssqlnvflanGarlYvd.gahpEystpEvtspldlv 98 
                 ri+G+EtEYg++++  +++++lsp+e+ar+l                       f+ ++++ rss  nvfl+nGarlY+d g+hpEy+tpE++s+ dlv
  KIR61683.1   4 RIFGLETEYGVTCTY-RGQRRLSPDEVARYL-----------------------FRRVVSWGRSS--NVFLRNGARLYLDvGSHPEYATPECDSVVDLV 76 
                 9************55.67889**********.......................9999999****..******************************** PP

                 HHHHHHHHHHHHHHHHHHHCCC.....-EEEEESSSB-TTS-B--EEEEEEEETTS-HHHHHHCHHHHHHHCHHHH---EEEETTTS-CEEEES-SSHH CS
  Pup_ligase  99 aydrAgdeilreaaeeaeeelg.....gevklykNnvDskGasYGchENYlvrravpfeelakkLlpflvtRqiitGaGrvglgeegeeagFqlsqrAd 192
                 a+drAg++il+ ++ +ae++l+     ge++l+kNn+Ds+G+sYGchENYlv+r+ +f +la+ L+pflvtRq+i+GaG+v   ++ + a ++lsqrA+
  KIR61683.1  77 AHDRAGERILEGLLIDAEKRLHdegiaGEIYLFKNNTDSAGNSYGCHENYLVSRHGEFGRLADVLIPFLVTRQLICGAGKVL--QTPRGAVYCLSQRAE 173
                 *******************999999********************************************************4..5788999******** PP

                 HCCCCCCSSSTTSEECEES-S--SS-TTTEEEEEE------SSHHHHHHHHHHHHHHHHHHHCT---S---BSSCCCCHHHHHC-TTS--EEEBTTS-E CS
  Pup_ligase 193 fieeevslettleRpiintrdEphadaskyrRLhvivgDsnlsevatllkvgttalvLdlieagkelpdleladpvaalrevsrdltlkatveladgre 291
                 +i+e vs++tt++RpiintrdEphada++yrRLhvivgDsn+ ev+tllkvg++++vL++ieag+ ++dl+l++p++a+revs+d+t +++v+la+g+e
  KIR61683.1 174 HIWEGVSSATTRSRPIINTRDEPHADAERYRRLHVIVGDSNMNEVTTLLKVGSADIVLRMIEAGVVMRDLSLENPIRAIREVSHDITGRRKVRLASGKE 272
                 *************************************************************************************************** PP

                 EEHHHHHHHHHHHHHHHHHHHHGGCSHHHHHHHHHHHHHHHH.HC-SCCCTTT-HHHHHHHHHHHHHHHHT--TT-HHHHHHHHHTTB-STTTSHHHHH CS
  Pup_ligase 292 ltaleiqrayleavrkfleeeeeeeeetkevlelWeevldal.eedpqaladridWvaKlrLleelrereglswddpklkalDlqYhdirpekglfarL 389
                 ++aleiq++yl ++++f+e+++ + +++k+v+elW++vl+a+ ++d + ++++idWv KlrL+e+++++++l +++p+++++Dl+Yhd+r+++gl+  L
  KIR61683.1 273 VSALEIQQEYLAKATEFVERRGGD-QTAKRVVELWGRVLRAVeTGDLEPVSREIDWVSKLRLIERYQRKHDLPLSHPRVAQMDLAYHDLRRGRGLYGLL 370
                 ********************9875.59***************999****************************************************** PP

                 HHCTSS--SS-HHHHHHHHHS--SSSTHHHHHHHHHHHHHH..EEEEESSEE CS
  Pup_ligase 390 vargrverlvteeeieravtepPadtrAalRgelvrefaee..vvavdWdsv 439
                 ++rg+v+r++t+ ei +a ++pP++trA+lRge++r+++e+  +++vdW ++
  KIR61683.1 371 ERRGEVDRVATDPEIFEAKETPPQTTRARLRGEFIRHAQEKrrDFTVDWVHL 422
                 ****************************************9889*****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3365.71
//
Query:       KIR61684.1  [L=62]
Description: hypothetical protein TK50_29485 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 434.08
//
Query:       KIR61685.1  [L=361]
Description: hypothetical protein TK50_29490 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-123  412.5   0.0   1.2e-123  412.3   0.0    1.0  1  DUF3866   Protein of unknown function (DUF3866)


Domain annotation for each model (and alignments):
>> DUF3866  Protein of unknown function (DUF3866)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.3   0.0  6.8e-128  1.2e-123       1     319 []      33     353 ..      33     353 .. 0.95

  Alignments for each domain:
  == domain 1  score: 412.3 bits;  conditional E-value: 6.8e-128
     DUF3866   1 rAlaYkaltgevevgdevllnttAvelkLGtGGyalvvaaeenlsedeee......kghivKlrYtplQvkvlaveeqespyhellreaesLeglpvvv 93 
                 rAlaY++l+g++++gd+vlln  A+ ++LGtGGyalvva +++l+ d+ +      +gh+vK+rYtplQ  +l+v+e++sp++e+l++ae+++glpvv+
  KIR61685.1  33 RALAYPHLVGRPAPGDRVLLNAGALLMGLGTGGYALVVALPDRLPPDPPQagdtrdAGHLVKARYTPLQPILLGVDEEASPHREVLAAAEDVAGLPVVT 131
                 8*******************************************9999989999955****************************************** PP

     DUF3866  94 aeLHSalaaivaglkkarpearvayvmtdggaLPlalSrtvaeLkekglldatitvGqaFGGdlEavnvytaLlaakevlkadvvivaqGPGivGtgtk 192
                 a+LHSal+ai+ag+++++p+arvay++tdggaLP+++Sr+++ L+  g l+ t++vGqaFGGdlEa +v+++Llaa++vl advvi+aqGPG++Gtgt+
  KIR61685.1 132 ADLHSALPAILAGIHADAPDARVAYLLTDGGALPAWFSRALDGLR--GRLAGTVSVGQAFGGDLEATTVHSGLLAARHVLAADVVICAQGPGNLGTGTR 228
                 *********************************************..88************************************************** PP

     DUF3866 193 yGfsgveqgeivnavaaLgGrpvavlRisfaDkReRHrGiShhsltvlgevalakaevvlpkleee....eelveeqleelaelakkhelvevaeekel 287
                 +G+sgv+ ge+vnavaaLgG+pv +lRis aD+R+RHrG+Shhslt++g+vala+a++v+p+        ++ v + l   a la +h++v+v++++ l
  KIR61685.1 229 WGYSGVAVGEAVNAVAALGGKPVGSLRISDADPRPRHRGVSHHSLTAYGRVALAPADLVVPD--GLpaalADDVDTAL---APLAGRHRIVRVPTDG-L 321
                 *************************************************************9..33213344444444...66788*******7777.* PP

     DUF3866 288 lealeeskvklstMGRgldedpafFlaaaaag 319
                 ++al++s+v lstMGRgld d+a+Flaaaaag
  KIR61685.1 322 DAALRASPVPLSTMGRGLDADHAYFLAAAAAG 353
                 ******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2775.54
//
Query:       KIR61686.1  [L=325]
Description: cation diffusion facilitator family transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-35  121.7  13.1    3.8e-35  121.4  13.1    1.0  1  Cation_efflux  Cation efflux family
     0.0048   17.0   0.0      0.012   15.8   0.0    1.7  2  ZT_dimer       Dimerisation domain of Zinc Transporter
  ------ inclusion threshold ------
       0.17   11.4   0.4       0.49    9.9   0.4    1.8  1  DUF1700        Protein of unknown function (DUF1700)
       0.33    9.7   3.3       0.33    9.7   0.8    2.0  2  PTR2           POT family


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4  13.1   8.5e-39   3.8e-35       2     199 .]      15     224 ..      14     224 .. 0.95

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 8.5e-39
  Cation_efflux   2 ilsllanlilalvelivglltnSlalladafhslsdlvsllllllalklsrkppderfpfGygrlevlgalvsgllllglav.fllleaiqklike 96 
                    +++ +anl++a+++l++gl+++S a+l++a hs++d+ ++ ll+lal+   +p+d r+pfGyg+  +++a+  +l+++++++ f+++++++ ++  
     KIR61686.1  15 VVAGAANLAIAVAKLVAGLISGSAAMLSEAAHSVADTTTEALLYLALRRGARPADVRHPFGYGKESYVWAFLAALFTFVAGAgFAITHGVTTIL-V 109
                    57889**********************************************************************66555544***********.9 PP

  Cation_efflux  97 gereihaglalvvalvslvvnlalllilrragrkl...............rsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvasl 177
                    +e++ +  +a+vv++vs++v+ ++l    r+ r+                 ++++ka++l+   D+++ +g l++a++  l  l++ +l+D++as+
     KIR61686.1 110 HEHSGNYLVAYVVLAVSFAVESVSLARATRQIRAEsrrwnttprrflrltADTTVKAVFLE---DSAALIGLLLAAVGLGLSHLTGDELYDGLASI 202
                    *************************99999999999*************************...*****************988888********* PP

  Cation_efflux 178 ligliilysalkllkeslseLl 199
                    +igl++l+ a  l+k ++s L+
     KIR61686.1 203 AIGLLLLVVAITLAKANISLLV 224
                    ******************9986 PP

>> ZT_dimer  Dimerisation domain of Zinc Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1         4   1.8e+04      50      60 ..      44      54 ..      42      56 .. 0.71
   2 !   15.8   0.0   2.6e-06     0.012       2      75 ..     229     303 ..     228     307 .. 0.89

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 4
                HHHHHHHHHHH CS
    ZT_dimer 50 eaHeiadevek 60
                 aH +ad   +
  KIR61686.1 44 AAHSVADTTTE 54
                68999987655 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.6e-06
                 ...HHHHHHHHHTT-SS-EEEEEEEEE-S-.---EEEEEEEE-TTS-HHHHHHHHHHHHHHHHHH-TT--EEEEE CS
    ZT_dimer   2 deeeeeeireiiksvpgvkgvhdlrtrksG.skifvdlhievdgdlsvkeaHeiadevekrikeefpgvadvliH 75 
                 +e  ++ei + +   p v++++ l t + G ++++v  ++ + +d +  +  + ade e+r+ +++p++ +v+  
  KIR61686.1 229 PERLRHEIAAELDGLPAVERIDTLLTMQLGpEDMLVAAKVDFRDDATGADIEAAADEAERRLTARYPEIGYVFLD 303
                 5667788888888899**************669***********************************9888765 PP

>> DUF1700  Protein of unknown function (DUF1700)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.4   0.00011      0.49     135     169 ..     189     224 ..     158     226 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00011
     DUF1700 135 elsln.vfvsigllglGllllivayylvkilykltv 169
                 +l+ + ++ +++ +++Gllll+va++l+k  + l+v
  KIR61686.1 189 HLTGDeLYDGLASIAIGLLLLVVAITLAKANISLLV 224
                 333334999********************9998876 PP

>> PTR2  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.14   6.3e+02      95     137 ..     105     149 ..      88     167 .. 0.66
   2 ?    9.7   0.8   7.3e-05      0.33      11      68 ..     174     231 ..     164     237 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.14
                 HHHHHCT..T-HHHHHHHHHHHHHHHHHHHHCTTTS-EE------ CS
        PTR2  95 tpylqen..vgyplgFgipavlmiiallvFllGsrlykkkppkgn 137
                 t++l  +   +y +++ + av +++  + ++  +r+ +    + n
  KIR61686.1 105 TTILVHEhsGNYLVAYVVLAVSFAVESVSLARATRQIRAESRRWN 149
                 444433333679999999999999888888877777766665555 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 7.3e-05
                 HHHHHHHCCCCT.TTTSS--S--.TCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-SS CS
        PTR2  11 yaiGhvvlalsa.ipslksaesa.gvrvallfigLalIalGtGgiKpnvSafgadqfeek 68 
                  +iG ++ a++   + l+  e   g  +a++ igL+l ++++ + K+n+S +++  ++e+
  KIR61686.1 174 ALIGLLLAAVGLgLSHLTGDELYdG--LASIAIGLLLLVVAITLAKANISLLVGRSVPER 231
                 5677777777776666665544336..8999***********************988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       892  (0.0497518); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 2028.22
//
Query:       KIR61687.1  [L=332]
Description: proteasome accessory factor B [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-31  109.5   0.0    2.8e-31  108.9   0.0    1.3  1  WYL       WYL domain


Domain annotation for each model (and alignments):
>> WYL  WYL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.0   1.6e-35   2.8e-31       3     172 .]     150     319 ..     148     319 .. 0.89

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 1.6e-35
         WYL   3 letlaeAieerrrvefrYrsp.agegeertvePyglvlkngrwYLvaydekrdeirtfrldRise.lellde..tfepp.dfdlakylsksfgvfkspv 96 
                 ++ l  A ++rr v+f+Yr p ++++++r+v+P+g+v+++grwY+v++d++r + r frl+R+ + +++ +    fepp + dl +++++++g  +++ 
  KIR61687.1 150 FAPLTAAARDRREVSFDYRAPdRDDPTRRRVQPWGVVCWRGRWYVVGHDLDRAATRCFRLSRVVGaVRVAGApgGFEPPpGLDLISHVARWSGPVERTG 248
                 678999***************999999*************************************967777774456655377************999** PP

         WYL  97 evkvrfspeaarrvrerrfpdqkieeedddgsvrvelpvesleellswllsfgdeveVlePaeLreevkeeaerll 172
                 +++v ++p  a+ +r+  +    +    ++   r+ lp ++ e l+  l+++g++v+Vl+P+e+re+v++++++++
  KIR61687.1 249 RATVLVRPGRAAGLRR--W---AVDSGSGPAGDRLVLPYADAESLAAKLVGYGPDVRVLDPPEVREAVIQRLKEIA 319
                 **************66..3...344445666667889************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 2121.98
//
Query:       KIR61688.1  [L=349]
Description: protein pafC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-33  114.2   0.6    1.3e-32  113.2   0.5    1.5  2  WYL       WYL domain


Domain annotation for each model (and alignments):
>> WYL  WYL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.15   2.8e+03      66     107 ..     114     158 ..     109     162 .. 0.65
   2 !  113.2   0.5   7.3e-37   1.3e-32       3     170 ..     160     326 ..     158     328 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.15
         WYL  66 elelldetfepp.dfdlakylsksfgvfks..pvevkvrfspeaa 107
                  l++l et     ++ +++ l+k +    +    +v+vr++ +++
  KIR61688.1 114 ALRMLAETPGVAnREAVERALAKIENAAGDlvGAPVEVRLQADGR 158
                 567777776644266677777777777666777777777776665 PP

  == domain 2  score: 113.2 bits;  conditional E-value: 7.3e-37
         WYL   3 letlaeAieerrrvefrYrspagege.ertvePyglvlkngrwYLvaydekrdeirtfrldRiselelldetfe.ppdfdlakylsksfgvfkspvevk 99 
                 +e+l+ A+ ++r ++++Y++pa++++ er ++P+++ +  gr Y+ a++++++e+r+fr dRi+ +  lde++  pp+ ++ ++ +  f+  ++   ++
  KIR61688.1 160 VEQLRAAVGRGRALRITYYTPARDETtERVIDPLRMLMVGGRAYVEAWCRRAEEVRLFRADRIDAVVELDEPAVvPPQARPHDLTEGVFRPSPDLPLIT 258
                 799******************666666*********************************************98455779*****99999999655567 PP

         WYL 100 vrfspeaarrvrerrfpdqkieeedddgsvrvelpvesleellswllsfgdeveVlePaeLreevkeeaer 170
                 +r+ ++++r++ e  +p +++e+ d+d+++ v+l+v +l ++++++l++g+ v V++PaeL e+v+++a +
  KIR61688.1 259 LRI-GRGERWITE-YYPCERVERGDGDQWL-VSLRVTDLGWARRFVLGLGPGVAVVAPAELAEQVRAQAVA 326
                 777.678888866.89*******8887776.99*********************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2436.28
//
Query:       KIR61689.1  [L=113]
Description: preprotein translocase subunit TatA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-17   61.3   0.0      5e-17   61.0   0.0    1.2  1  MttA_Hcf106  mttA/Hcf106 family
  ------ inclusion threshold ------
       0.14   12.8   8.1       0.15   12.7   8.1    1.1  1  Pex14_N      Peroxisomal membrane anchor protein (Pex14p) con
        5.5    6.1  13.5        5.7    6.1  13.5    1.0  1  DUF4106      Protein of unknown function (DUF4106)


Domain annotation for each model (and alignments):
>> MttA_Hcf106  mttA/Hcf106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   8.3e-21     5e-17       3      50 ..       6      53 ..       4      84 .. 0.89

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 8.3e-21
                 HHHHHHHHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH---XX CS
  MttA_Hcf106  3 apelliIlvValllFGpkkLPEvaraLGktLreFkkavkeleeeneke 50
                 ++++++++vV++llFG+k+LP++ar+LG++Lr  k ++k+l +++++ 
   KIR61689.1  6 PWHIAVLVVVMILLFGAKRLPDAARSLGRSLRIIKAETKSLHDDDRDL 53
                 7******************************************96653 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.1   2.5e-05      0.15      74     126 ..      54     101 ..      19     112 .. 0.45

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.5e-05
     Pex14_N  74 satpqpqaasqtsqsspspsppaqqqqqqy.rpPivtypefltkppkppppPlr 126
                 ++++ +qa +q+ q+      +a+q+qqqy ++P++ y + +++p +pp+ P++
  KIR61689.1  54 AEKADAQAGYQPLQP------NAAQPQQQYaQQPQQSYVQPQQQPYAPPQAPQQ 101
                 222222222222221......111122222245555554444444444444443 PP

>> DUF4106  Protein of unknown function (DUF4106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  13.5   0.00095       5.7     206     246 ..      64     105 ..      25     112 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00095
     DUF4106 206 qptvqnpaqqptqqptvqqpaqv.qqpaqqp..ppqpaqqptvq 246
                 qp +q  a qp qq + qqp q   qp qqp  ppq  qqp+++
  KIR61689.1  64 QP-LQPNAAQPQQQYA-QQPQQSyVQPQQQPyaPPQAPQQPVID 105
                 33.3455666777766.666654257888877789988898764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 979.69
//
Query:       KIR61690.1  [L=317]
Description: preprotein translocase subunit TatC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-59  198.6  10.5    1.3e-58  198.3  10.5    1.1  1  TatC      Sec-independent protein translocase protein (TatC)


Domain annotation for each model (and alignments):
>> TatC  Sec-independent protein translocase protein (TatC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.3  10.5   7.2e-63   1.3e-58       1     206 [.      25     240 ..      25     240 .. 0.94

  Alignments for each domain:
  == domain 1  score: 198.3 bits;  conditional E-value: 7.2e-63
                 -HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCCHHHHC.C.......TTS-EE--SSS-HHHHHHHHHHHHHHHHSHHHHHHHHHCCCTTTTS--- CS
        TatC   1 ehLeeLrkrlirallavaiafiitfvfaeeliafllepleeae.......eevelivlspleafllklkvslvaglvlasPvilyqlwafvapgLykhe 92 
                 +h++eLr+rl+ra la++++f +++++a+++  +l +p+ + +        +++++ l ++++fll+lk++l++glv+a+Pv+lyqlwaf+apgL++he
  KIR61690.1  25 DHIRELRSRLFRASLAIVVGFGFGIWLATPVRLLLSKPYCDLPasidpdtGKCNFVQLGVADVFLLNLKIGLWVGLVIAAPVWLYQLWAFIAPGLHRHE 123
                 7***********************988888888999998876346666653499********************************************* PP

                 STTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT...TTTSSTTEEHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTTSS-HHHHHTTHHHHHHHHHH CS
        TatC  93 rrlvlvfliaslllfllGaafayfvvlplvlkfll...seevepllslseylsfvlllllafgiaFelPlvlvllarlglvsaetlrkkrryaivvilv 188
                 rr+++vf  ++  lf++Ga++a+f v+   l+fll   +++++++l+++ y+sfv+ l+l+fg+aFe+Pl++++l+ +gl sa+ l +++r+ai+v++ 
  KIR61690.1 124 RRYAYVFTSLAAPLFAAGAVLAFF-VTTKGLEFLLnvsGDDISTNLEVTRYISFVTNLILLFGVAFEFPLIVLMLNFVGLASAKRLLSWWRVAIFVFFA 221
                 ***********************8.8899******8887778999****************************************************** PP

                 HHHHH-S..SHHHHHHHHH CS
        TatC 189 vaavltP.pdvisqlllav 206
                 ++av+tP pd++ +++lav
  KIR61690.1 222 FSAVVTPtPDPFGMTALAV 240
                 ****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2214.43
//
Query:       KIR61691.1  [L=242]
Description: hypothetical protein TK50_29535 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1731.52
//
Query:       KIR61692.1  [L=313]
Description: sphingosine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-23   82.8   0.0    4.1e-23   81.4   0.1    1.7  2  DAGK_cat     Diacylglycerol kinase catalytic domain
    2.4e-06   27.0   0.2    3.1e-06   26.6   0.2    1.1  1  NAD_kinase   ATP-NAD kinase
  ------ inclusion threshold ------
       0.05   13.4   0.0        0.1   12.4   0.0    1.5  1  Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit


Domain annotation for each model (and alignments):
>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.1   6.9e-27   4.1e-23       2     125 ..      20     144 ..      19     145 .. 0.93
   2 ?   -2.0   0.0      0.44   2.6e+03      56      87 ..     155     187 ..     151     188 .. 0.75

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 6.9e-27
                 EEEEE-TTCTTTTHHHHHHHCHHHHHHCTCEEEEEE--STTHHHHHHHHHHHCC-SEEEEEESHHHHHHHHHHHCTHHCTTSEEEEEE-SS--HHHHHC CS
    DAGK_cat   2 llvivNpksGkgkgekllrkvrelleeagvelelieteepgdakelakeakeegvdlivvaGGDGtvsevlnglleelatkpplgiiPlGtgNdlaral 100
                 + v+ Np++G+g+  +ll ++ + l+ ag  ++l e     +a++ ++ a ++g+ ++v +GGDGtv+  l+++++   t +p++ +P+GtgNd+a + 
  KIR61692.1  20 VAVLANPTAGRGRHGSLLPRLLDRLATAGRPVRLLEAGTGAQAEAACRAAVADGAAALVTVGGDGTVHRGLQAVAG---TGVPFAPVPAGTGNDFAADT 115
                 78**************************************************************************...******************** PP

                 T--SSHHHHHHCH....HCTBEEEEEEEE CS
    DAGK_cat 101 gigkdieealesi....ikgetrkvdvgk 125
                 g++ d+ +a+e++    ++g+tr+vd+++
  KIR61692.1 116 GFPADPLAAVETVaaalREGRTRPVDLAR 144
                 ****9999888774444678888888875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.44
                 -SEEEEEESHHHHHHHHHHHCT.HHCTTSEEEE CS
    DAGK_cat  56 vdlivvaGGDGtvsevlnglle.elatkpplgi 87 
                 + ++++aG D +v+e +n + + +  ++  l+i
  KIR61692.1 155 YGAVLAAGFDAIVNERANRMRRpRGPRRYDLAI 187
                 568999999999999999888866666666666 PP

>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.2   5.2e-10   3.1e-06      66     144 ..      61     145 ..      39     194 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 5.2e-10
                 EEECCC-TTTTTSSSEEEEEE-HHHHHHHHHHHHHCT-EEEEEESSS--.SS-SE.....EGGGHHHHHHHHHHT-SEEEEEEEE CS
  NAD_kinase  66 dtrkaleafadagvdliivvGGDGTaldvarllqkaeiPvlgvnaGvkg.fltef.....epeaaaellekllegeirvekrevl 144
                 + ++a +a + +g++++++vGGDGT+ +  ++++   +P + v+aG+ + f ++      + +a+ +++++l eg+ r+ +  +l
  KIR61692.1  61 QAEAACRAAVADGAAALVTVGGDGTVHRGLQAVAGTGVPFAPVPAGTGNdFAADTgfpadPLAAVETVAAALREGRTRPVDLARL 145
                 56778899999***********************************954376666667755566666666666677777666655 PP

>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.7e-05       0.1      74      94 ..     212     232 ..     206     267 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.7e-05
                  SEEEEESHHHHH-TGGGSTT- CS
  Oxidored_q6  74 kaviavGtCAafGGipaaann 94 
                  ++++avG+CA++GG ++  ++
   KIR61692.1 212 AVLVAVGNCASYGGGMRICPD 232
                  579***********8766664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2466.18
//
Query:       KIR61693.1  [L=325]
Description: glycoside hydrolase family 2 sugar binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-87  293.0   0.0    3.8e-87  292.9   0.0    1.0  1  DUF2804   Protein of unknown function (DUF2804)


Domain annotation for each model (and alignments):
>> DUF2804  Protein of unknown function (DUF2804)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.9   0.0   2.1e-91   3.8e-87       1     326 []      17     324 ..      17     324 .. 0.94

  Alignments for each domain:
  == domain 1  score: 292.9 bits;  conditional E-value: 2.1e-91
     DUF2804   1 dGkl..aefGwarkpvkeynrldlkakklrikewdyysivtpeyllalaiadlgyaglafvylldfkekkeleetallplplgkglelpkssdegsvsy 97 
                 dG+l  a++Gw r+p+++ n     ++++r k+w+y+++vtp +++++++++l+yag+ +vy+ld+ +++e+ + a+ pl  ++g++lp++s  g v  
  KIR61693.1  17 DGRLdpAAVGWTRRPLHRAN----LRGWGRTKRWEYWGVVTPAHVIGVVVSSLDYAGVHSVYVLDRATGEEVVTEAVVPL--ARGVTLPERSGVGPV-T 108
                 58888899************....7*****************************************88777777777775..999**********98.6 PP

     DUF2804  98 kskklsiefev.egt.rrlsvekknfskgkeleadleldeppereslvvvtPfegkkafyytqKinglpaeGtltlggkeyefdeeedsfgvldwgrGv 194
                  ++ +++++++   +  +l+++        ++e+dl +  p+++esl vv+P+ g+++f+yt K+ g p++G+l++gg+ ++++ +  sf+vld+grG 
  KIR61693.1 109 ARGPVTVDVDQrP-DgTTLRAT------AGDVEVDLAMPLPAGHESLGVVVPW-GQRRFQYTVKDVGRPVHGRLRVGGTWHDVPAD-GSFAVLDHGRGR 198
                 6999*****9952.33666655......4679*********************.****************************9766.6*********** PP

     DUF2804 195 wpyettwywasasgklkdgktfgfnlgagfgdtsaatENalfldGklhkL.gpVkfeidkkdylepWkitsedgrvdltFtPisdrkektnllliaskf 292
                 wpy+  w+wa++sg        +++lg +++d +++tEN lf+ G+lhk+ +++++++d++d+l+pW+it +  rvd+t++P+++r+++tnl+++a+++
  KIR61693.1 199 WPYSIAWNWAAGSGPG-----RAVQLGGKWTDGTGSTENGLFVAGRLHKIgDELRWTYDRSDWLRPWRITGD--RVDVTLHPFHERAARTNLGVVANET 290
                 **************86.....799***********************************************7..************************* PP

     DUF2804 293 hqvfGkfsGtvvlddGekvelddllGfaEdhrak 326
                 hq+fG+f+G++ +ddGe+v ld+l+G+aE+ r++
  KIR61693.1 291 HQCFGHFTGWAATDDGERVDLDGLVGWAEEARNR 324
                 *******************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2489.66
//
Query:       KIR61694.1  [L=184]
Description: deaminase/reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-23   83.3   0.0    2.3e-23   83.0   0.0    1.1  1  RibD_C    RibD C-terminal domain


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0   1.3e-27   2.3e-23       1     199 [.       2     174 ..       2     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 1.3e-27
                 -EEEEEEEEETTSBSSCTTSSGCTSS-HHHHHHHHHHHHTSSEEEEEH...HHHHHHT--SS--SSCHSCHHHTT.G..SS-EEEEEETTS-S-TTSH. CS
      RibD_C   1 pyvilklavSlDGklaaaggeskwitgeearadvhelraeadailvGr...gtvladnpsltvrwvkkreaeadaea..rqpvrvVvdstlrvpldak. 93 
                 +++i  + v+lDG+++ + +++    ++ea a++++ +  ada+l+Gr   + ++  +p+     +      + + a  ++++++V+++tl++p   + 
  KIR61694.1   2 RKLINSTYVTLDGVIENPMWTMP-YFDDEASAFAGAQTDAADAVLMGRvtyDGMSVAWPAQDESDP------TTGAAyfNNVRKYVASTTLTDPTW-Nn 92 
                 57888999***************.999*********************888888888882222222......3333345************96643.33 PP

                 ..HHHSSS-EEEEESSCSCHHHHHHCCESE-HHHHHHHHHHTT--EEEEEETHHHHHHHHHTTT-SEEEEEEESCE--TTSBCSSSSST-SSEEEEEEE CS
      RibD_C  94 ..vltddaptlvatteeadkekveklkvrvdlkelleeLkergirsllveGGatLagsllraglvDelrlyiaPkllGgagktlfdgegfkalklklvk 190
                   vl++d                        l++++++Lk++++r+++  G +++ ++l+raglvDe+r+ i+P+l Gg + +  +  +f+   ++l  
  KIR61694.1  93 trVLRGD------------------------LVAEVRKLKAQEGRDIIQYGFGSVTAQLVRAGLVDEVRFWIHPVLTGG-ASMTAPLADFT-ASFELID 165
                 6699998........................************************************************.**********9.5999999 PP

                 EEEETTEEE CS
      RibD_C 191 sealgegvv 199
                 ++++ +gvv
  KIR61694.1 166 TRVMKSGVV 174
                 999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1477.49
//
Query:       KIR61695.1  [L=777]
Description: hypothetical protein TK50_29565 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.3e-139  463.6   0.1   9.4e-139  463.2   0.1    1.1  1  Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
    2.5e-25   89.0  16.0    3.2e-14   53.4   4.8    3.6  3  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    1.5e-06   28.5   0.4    1.1e-05   25.6   0.4    2.4  2  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
  ------ inclusion threshold ------
      0.032   14.9   0.0      0.087   13.5   0.0    1.7  1  DUF4986          Domain of unknown function
        0.1   12.5   0.0         16    5.4   0.0    2.5  2  SpoIIE           Stage II sporulation protein E (SpoIIE)


Domain annotation for each model (and alignments):
>> Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  463.2   0.1  2.6e-142  9.4e-139       1     519 []      57     575 ..      57     575 .. 0.96

  Alignments for each domain:
  == domain 1  score: 463.2 bits;  conditional E-value: 2.6e-142
                      CEEE-SSHHHHHHHHHHHCHHHCHHHHHHHHHHHHTT--.-SS---SGGG----TTT-TTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH CS
  Glyco_hydro_127   1 dVrltdsffldrqetvreyllaldpdrlletfrkeaglp.skaeaaggwedektgeelrdgdlgkwleavalllastkdkelekrldrlvdela 93 
                      +Vrlt + +ld+q+++  yl  +d+drll +fr +  l  + a + ggw+   + +++r +  g++l a a+++a+ +d++++++++++v+ela
       KIR61695.1  57 QVRLTAGRWLDNQNRTLSYLRFVDVDRLLYNFRANHRLStNGAASNGGWD--APSFPFRTHMQGHFLTAWAQAYAVLGDTTCRDKANYMVAELA 148
                      69*******************************887775166778899**..****************************************** PP

                      HHCH.......SSS-B-GCCTHHSSEETTEESH-.---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCS-CCHHHHHTTTHHCT CS
  Glyco_hydro_127  94 kaQq.......edGYlsavtelkneakkeawapd.shelYnlgkliegavayyqatgkeklldvatrladyleevleklgdeqlqkalvpehgg 179
                      k+Q+         GYls+++e++  a + +   + +  +Y+++k++ g+++++++ g++++ +v++ la ++++++++l+  q+q++l +e+gg
       KIR61695.1 149 KCQAnngaagfTAGYLSGFPESDFAALEARTLSNgNVPYYCIHKTLIGLLDVWRYIGNTQARTVLLALAGWVDTRTSRLSSSQMQNMLGTEFGG 242
                      ****9**99999***********666665555544899******************************************************** PP

                      HHHHHHHHHHHHT-CHHHHHHHHCCHHCCHCCT-HCTTT-SSTCGCHHCHHCCHHHHHHHHHHHHHHHHHCTTHCCHHHHHHHHHHHHHHCB-T CS
  Glyco_hydro_127 180 ieealvklyelTgdkrYldlAkrfidergldpeklaykqdelpvrhqntaigkavRatylysgladvyeetgddkllkaaerlwdnvvtkkmyv 273
                      ++eal++ly+ Tgd r+l++A+rf+++++++p  la ++d+l+++h+nt+++k +       g+a+ ++ tg  +++++a + w+  v+ ++yv
       KIR61695.1 243 MNEALADLYQYTGDGRWLTVAQRFDHAAVFNP--LASNSDQLNGLHANTQVPKWI-------GAAREFKATGTTRYRDIASNAWNMTVNAHTYV 327
                      ********************************..*********************.......******************************** PP

                      TS-B-BCEEECE--STT--HCCCH-..-BHHHHHHHHHHHHHHHHCH--.CHHHHHHHHHHHHTTGGGB-TTT..S-BBSB--STTTBS--SS. CS
  Glyco_hydro_127 274 tGGigakhdgEaFgppyelpnrlay..aEtCasinmlklarrlleltpd.akyadvlEralyNsilagvsldg..ksffYvnplesgskklrk. 361
                      +GG++++   E+F+pp+ ++  l++  +E+C+++nmlkl+r+l+  +p+ a+y+d  Eral N++++++++ +  ++++Y++pl++g+++    
       KIR61695.1 328 IGGNSQA---EHFRPPNAISGYLTNdtCEHCNTVNMLKLTRELWLIDPNrAAYFDFFERALANHVIGAQNPADghGHVTYFTPLKPGGRRGVGp 418
                      *******...**********9998889*********************999********************887899********999995547 PP

                      .....SC-BTTTTT-CHHHHHHHHCCGGGGGSEEEETTEEEE-S-SSEEEEECGCT-EEEEEEEE-TTSSSEEEEEEEETT--CEEEEEEE-TT CS
  Glyco_hydro_127 362 .....lystkwdscaCCppnglrtvaklgeyiYaesddtvyvnLyiaselklklkgkeveleqetnyPwegkvkltvktqkkaeftlklRiPgW 450
                            +st+++s++CC+++gl++ ++l ++iY+ +  t+ vnL+++s+l++   g  ++++q tnyP  ++++l+++     + ++++RiP+W
       KIR61695.1 419 awgggTWSTDYNSFWCCQGTGLEVNTRLMDSIYFYNGTTLTVNLFAPSTLNWSQRG--ITVTQSTNYPVGDTTTLSLSGTMSGSWSIRVRIPAW 510
                      88******************************************************..************************************ PP

                      -S-EEEEETTEEE--S-STTEEEEEEEE--TT-EEEEEE---EEEEE--TT-CCGTTEEEEEETTEEEE CS
  Glyco_hydro_127 451 aaaatltvnGkkvvvkkksdgYleiereWkkgdkvelelpmsvrleeanpkvrddankvavlrGPlvla 519
                      a++at+ vnG++++v++++++Y++++r+W+ gd+v++ lpm+v l  a    +d+a  +av +GP+vla
       KIR61695.1 511 ATGATVAVNGATQSVDTTPGSYATVTRTWAAGDTVTVRLPMRVVLSPA----NDNAAVAAVTYGPMVLA 575
                      ************************************************....***************97 PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       4.1   1.5e+04      22      34 ..     512     524 ..     496     547 .. 0.51
   2 !   53.4   4.8   8.9e-18   3.2e-14       5      89 .]     630     714 ..     627     714 .. 0.93
   3 !   41.8   0.6   3.7e-14   1.3e-10       4      58 ..     723     777 .]     720     777 .] 0.93

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.1
                      SSEEEECGCCTBC CS
  RicinB_lectin_2  22 sgkvLdvaggsta 34 
                      +g  ++v+g+ ++
       KIR61695.1 512 TGATVAVNGATQS 524
                      4444444444333 PP

  == domain 2  score: 53.4 bits;  conditional E-value: 8.9e-18
                      EEE.CETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2   5 Wtl.gsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      W++ g +g+ + +++nv+sg+vL +++ sta+g  + qw ++g+a   W +++ g g+++++n++sgkvL v++ sta+ ++v qw
       KIR61695.1 630 WSVsGGTGTTTHKLVNVGSGLVLGIQNMSTADGGLALQWGDTGTADHNWVVVTEG-GNVKFRNVNSGKVLGVENMSTADNARVLQW 714
                      99943455568***************************************99888.9****************************9 PP

  == domain 3  score: 41.8 bits;  conditional E-value: 3.7e-14
                      EEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCE CS
  RicinB_lectin_2   4 qWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtg 58 
                       Wtl s+gdg+y+i+nv+sgk L + +gsta+ga+++q +++g+a  +Wrl+ +g
       KIR61695.1 723 LWTLLSQGDGTYKIRNVNSGKLLGILNGSTAQGAQAVQDSDNGSADNRWRLVANG 777
                      7***66889******************************************8876 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0025       8.8      49     127 .]     596     678 ..     579     678 .. 0.73
   2 !   25.6   0.4   3.2e-09   1.1e-05       3     127 .]     641     771 ..     639     771 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0025
                     EETT.TTEEEEESSSSTTSBEEEEETTT..TSG.GGCEEEETTTTE....EEETTTSEEEEESTTSSTTTBEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  49 rskaqselCldvsstaegakvvlakChk..gkg.nqrWefdkdgtq....irhkksgkCLdvkgasksneklilkkcdsgsdsQkW 127
                     r+ ++s+l ++  +ta+ga+v la+ ++  g + + +W++   + +    +++  sg++L +++ s++++ l l+  d+g+++ +W
      KIR61695.1 596 RT-STSSLAFT--ATANGATVNLAPFQDahGYNyTVYWSVSGGTGTtthkLVNVGSGLVLGIQNMSTADGGLALQWGDTGTADHNW 678
                     44.23556666..59********99998665555788998754443456688888************9995555546788777777 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 3.2e-09
                     EEEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEE.EETTSEEEETT..TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTTE. CS
  Ricin_B_lectin   3 geirnvasgkCLdvegeska.gapvglydChgskgkQlwt.ltkdgeirska.qselCldvs..staegakvvlakChkgkgnqrWefdkdgtq. 91 
                      +++nv sg+ L +++ s+a g+ + ++  +g+++   w  +t+ g ++ ++ +s++ l v+  sta++a+v ++  + g+++ +W++ ++g++ 
      KIR61695.1 641 HKLVNVGSGLVLGIQNMSTAdGGLALQWGDTGTAD-HNWVvVTEGGNVKFRNvNSGKVLGVEnmSTADNARVLQWADN-GTADHLWTLLSQGDGt 733
                     5799****************999999999999977.66662667788888888899999999999*********9987.999*****88888877 PP

                     ..EEETTTSEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  92 ..irhkksgkCLdvkgasksne.klilkkcdsgsdsQkW 127
                       ir+ +sgk L + ++s++++ + ++   d+gs++ +W
      KIR61695.1 734 ykIRNVNSGKLLGILNGSTAQGaQAVQD-SDNGSADNRW 771
                     89***************99999555555.89***99999 PP

>> DUF4986  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.4e-05     0.087      41      84 .]     592     630 ..     580     630 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.4e-05
                 HTEEE-SSSS--EEE-S-EES-----EEEEEGGG--SSEEESEE CS
     DUF4986  41 eklkkvsgkpLkfklkelvepekeesleLePFfrihdsRYmvYw 84 
                 ++++++s+++L f++++     +   ++L PF + h   Y+vYw
  KIR61695.1 592 TSVTRTSTSSLAFTATA-----NGATVNLAPFQDAHGYNYTVYW 630
                 678999999*****984.....5689****************** PP

>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0077        28      81     117 ..     674     709 ..     670     717 .. 0.88
   2 ?    5.4   0.0    0.0044        16      80     115 ..     719     754 ..     708     762 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0077
                 ESSSSEEEEETTSTEEEEE--SS--TTTSSST-EEEE CS
      SpoIIE  81 aGhpppllvrpdggtklllastglplGilpeadyeta 117
                 a h+++++  + g++k++ + +g +lG+   +++++a
  KIR61695.1 674 ADHNWVVVTEG-GNVKFRNVNSGKVLGVENMSTADNA 709
                 89*********.****************777777665 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0044
                 EESSSSEEEEETTSTEEEEE--SS--TTTSSST-EE CS
      SpoIIE  80 naGhpppllvrpdggtklllastglplGilpeadye 115
                  a h + ll ++dg+ k++ + +g +lGil +++++
  KIR61695.1 719 TADHLWTLLSQGDGTYKIRNVNSGKLLGILNGSTAQ 754
                 489***************************997776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 5191.29
//
Query:       KIR61696.1  [L=335]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-33  116.8   2.8    1.3e-33  116.6   0.2    2.2  2  Peripla_BP_3    Periplasmic binding protein-like domain
    2.8e-20   71.8   1.3      4e-20   71.3   0.1    2.0  2  LacI            Bacterial regulatory proteins, lacI family
      1e-14   54.7   0.0    1.3e-14   54.3   0.0    1.1  1  Peripla_BP_1    Periplasmic binding proteins and sugar bindin
    2.4e-14   53.5   0.0    4.1e-14   52.8   0.0    1.3  1  Peripla_BP_4    Periplasmic binding protein domain
    0.00089   19.0   0.2       0.37   10.7   0.0    2.9  2  HTH_23          Homeodomain-like domain
     0.0012   18.9   0.0     0.0048   16.9   0.0    2.1  2  HTH_3           Helix-turn-helix
     0.0017   18.7   1.1      0.016   15.5   1.1    2.7  1  HTH_31          Helix-turn-helix domain
      0.004   16.9   0.0     0.0092   15.7   0.0    1.6  1  HTH_38          Helix-turn-helix domain
     0.0052   16.2   0.1      0.014   14.8   0.1    1.8  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.16   11.9   0.0    1.3  1  rRNA_methylase  Putative rRNA methylase
       0.13   12.2   0.1       0.13   12.2   0.1    3.0  4  MarR_2          MarR family
       0.38   10.9   2.9        3.3    7.9   0.0    3.1  3  HTH_28          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.97   1.4e+03      28      80 ..      80     126 ..      64     154 .. 0.62
   2 !  116.6   0.2   8.9e-37   1.3e-33       1     166 []     172     330 ..     172     330 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.97
                   HHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEE CS
  Peripla_BP_3  28 erergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalPtAvia 80 
                    ++ +f+ a++e+g+ + +  v++ d ++ +a+ +++l +++       ++++
    KIR61696.1  80 SLLSAFELAAAEAGFAVSVGSVRNLDRDSITAVVERHLAHRV------AGIVV 126
                   566788888888888887777777777776666666632332......33333 PP

  == domain 2  score: 116.6 bits;  conditional E-value: 8.9e-37
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-S..EEEEESSCCHHHHHHHHHCC CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalP..tAviaasDelAlgvlqalre 95 
                   ++hL+++Ghr+++ ++  g+ +   s  r +g+r++l+++g + ++++  ++d++aa+++r   +l +      P  tA++ a+D lAlgvl al+e
    KIR61696.1 172 TQHLLDAGHRTVWHVS--GPGDWFDSAGRIAGWRETLRAAGAEAPPVL--QADWSAASGYRCGQMLAR-----TPgvTAIFTANDDLALGVLHALHE 259
                   69**************..6766677778*************9977664..566777888888775522.....34449******************* PP

                   TT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  96 aglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   +g rvPe++sv+gfdd + aa++ PplTtvr++++++++a ++lll+++e+    + ++ ++p+l++R+S+
    KIR61696.1 260 HGRRVPEEVSVVGFDDVPDAAYFIPPLTTVRPDFDTVAKASLTLLLAQIESGVDRTLRQTVSPTLITRSSV 330
                   *************************************************555555555556777*****97 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.1   2.7e-23     4e-20       2      46 .]       8      52 ..       7      52 .. 0.99
   2 ?   -3.7   0.2       7.5   1.1e+04      14      26 ..     318     330 ..     317     331 .. 0.70

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 2.7e-23
                HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                ++DVArlAGVS +TVSrvLn++++V+e+tr rV aa+ +l+Y+Pn
  KIR61696.1  8 MRDVARLAGVSHQTVSRVLNGHPNVREQTRLRVQAAISQLGYRPN 52
                89******************************************9 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.5
                 HHHHHHCTTSSSS CS
        LacI  14 aTVSrvLnnkerV 26 
                 +TVS  L  +++V
  KIR61696.1 318 QTVSPTLITRSSV 330
                 6999887666665 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   8.8e-18   1.3e-14      18     230 ..      80     280 ..      64     321 .. 0.85

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 8.8e-18
                   HHHHHHHHHHHHHTEEEEE..EE-SSHHHHHHHHHHHHHTT-SEEEEE-S-GG.HHHHHHHHHHT-EEEEESS--B-TTTS-EEEE-HHHHHHHHHH CS
  Peripla_BP_1  18 dlvkgitkaakehgvdvll..laageeedlakaidllkakgidgliiatsdts.fdditakaesgipvialedaidapdgvPcvipddtqageestq 111
                   +l+++ + aa+e g++v +  +   + + + + ++  +a+++ g+++  + +s  +++      +ip + ++     p   P+v  d+ + g  +tq
    KIR61696.1  80 SLLSAFELAAAEAGFAVSVgsVRNLDRDSITAVVERHLAHRVAGIVVIAPVESaAEALDCLPT-DIPLVTVDGDPRRP--EPLVTIDQVEGGRLATQ 173
                   67788888999999888873344455666779999**********988888883556655555.5*******999999..8**************** PP

                   HHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHHHHHHHHHHTT.--GG CS
  Peripla_BP_1 112 kLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaalGavlalkkeGrlkik 208
                   +L+ +gh+  +  ++gp     ++ r  G++++l++aG   + + v++ + +   ++    ++l + P + ai + nd  alG   al  +G  + +
    KIR61696.1 174 HLLDAGHRT-VWHVSGPGDWFDSAGRIAGWRETLRAAGA--EAPPVLQADWSAASGYRC-GQMLARTPGVTAIFTANDDLALGVLHALHEHG-RRVP 265
                   *********.*****************************..9************99986.78******************************.799* PP

                   GEEEEEESSGGGHHHHTSSS-- CS
  Peripla_BP_1 209 eevdsfiesvvvydgLkkaqdt 230
                   eev     svv++d    + + 
    KIR61696.1 266 EEV-----SVVGFDDV--PDAA 280
                   ***.....9****998..3333 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   2.8e-17   4.1e-14      19     226 ..      84     283 ..      78     310 .. 0.84

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 2.8e-17
                   HHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-HHHHHHHHHHHH CS
  Peripla_BP_4  19 gleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayvgfdneaaGelqaeyl 115
                   ++e aa+e+g+ v v +  + d     a++e  +a  v gi+v +   +a+ +al+ +    Ip v++d d     +    v++d+ + G+l+ + l
    KIR61696.1  84 AFELAAAEAGFAVSVGSVRNLDRDSITAVVERHLAHRVAGIVVIAPVESAA-EALD-CLPTDIPLVTVDGD---PRRPEPLVTIDQVEGGRLATQHL 175
                   7999*******999867788888******************9666554444.4666.56678*********...7888889**************** PP

                   HHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHH.TTTECEEEESSCCHHHCHHHHHHHTTT..TS CS
  Peripla_BP_4 116 aeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqaleallt.anpldgilaandgmaegalealeaagl..ag 209
                   +++      +v  ++G  +  +++ ri+g r++l++  g +  + v +a+w+a+ ++++ + l + +  + +i++and+ a+g+l al + g+    
    KIR61696.1 176 LDAGH---RTVWHVSGPGDWFDSAGRIAGWRETLRA-AGAEAPP-VLQADWSAASGYRCGQMLARtPG-VTAIFTANDDLALGVLHALHEHGRrvPE 266
                   ***98...68**************************.4555444.5677*********8887777555.***********************98444 PP

                   TEEEEEES-HHHHHHHH CS
  Peripla_BP_4 210 kvvvtgqDatpealeai 226
                   +v v+g+D  p a  +i
    KIR61696.1 267 EVSVVGFDDVPDAAYFI 283
                   455*****999988777 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00025      0.37      21      39 ..       9      27 ..       7      28 .. 0.92
   2 ?    5.1   0.1     0.013        20       3      29 ..      33      60 ..      31      81 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00025
      HTH_23 21 reIAreLgvsrrTvyrwlk 39
                r++Ar+ gvs++Tv+r+l+
  KIR61696.1  9 RDVARLAGVSHQTVSRVLN 27
                89**************985 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.013
      HTH_23  3 sereRlrillllae.GlsvreIAreLgv 29
                +e+ Rlr+  +  + G+++ ++Ar+L  
  KIR61696.1 33 REQTRLRVQAAISQlGYRPNRAARALVT 60
                89**********************9955 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.2e-06    0.0048      13      37 ..       9      33 ..       4      52 .. 0.83
   2 ?   -2.7   0.0       4.2   6.3e+03      26      36 ..     305     316 ..     305     320 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.2e-06
                HHHHHHHTSSHHHHHHHHTTSSCSB CS
       HTH_3 13 eeLAeklGvsrstisriEnGernPs 37
                +++A+++Gvs +t+sr  nG+ n +
  KIR61696.1  9 RDVARLAGVSHQTVSRVLNGHPNVR 33
                79******************65544 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.2
                 HHHHHTT.SSCS CS
       HTH_3  26 isriEnG.ernP 36 
                 +++iE+G +r  
  KIR61696.1 305 LAQIESGvDRTL 316
                 679999966555 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.1   1.1e-05     0.016      18      46 ..       9      36 ..       2      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
      HTH_31 18 eevAerlgvsestlsrlEqGrrgrpspav 46
                ++vA+++gvs  t+sr+ +G   ++++++
  KIR61696.1  9 RDVARLAGVSHQTVSRVLNGHP-NVREQT 36
                79******************99.587764 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.1e-06    0.0092      18      41 ..       3      26 ..       1      28 [. 0.89

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.1e-06
      HTH_38 18 aeGlslreIArrLgrspsTIsREl 41
                a+G  +r++Ar+ g+s++T+sR l
  KIR61696.1  3 ARGPAMRDVARLAGVSHQTVSRVL 26
                567789****************97 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   9.5e-06     0.014      29      49 ..       7      27 ..       1      29 [. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.5e-06
  HTH_Tnp_ISL3 29 svkavArqlgvSwtTVwrild 49
                  ++++vAr+ gvS  TV r+l+
    KIR61696.1  7 AMRDVARLAGVSHQTVSRVLN 27
                  899***************996 PP

>> rRNA_methylase  Putative rRNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011      0.16      25      68 ..      20      64 ..       7      83 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                    GSEEEEES-GGGGGGT--S-EEEEEEEESB-CT.S-TTSB--HHH CS
  rRNA_methylase 25 ervelildsHekleeyvkekvkavifNLGYLPg.gdksivTkaet 68
                    ++v+ +l++H +++e+++ +v+a+i  LGY P+ + +++vT +++
      KIR61696.1 20 QTVSRVLNGHPNVREQTRLRVQAAISQLGYRPNrAARALVTGRSQ 64
                    468999**************************9346677776655 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   8.4e-05      0.13      18      43 ..       5      27 ..       1      28 [. 0.87
   2 ?   -3.6   0.1       7.2   1.1e+04      22      40 ..      38      56 ..      33      58 .. 0.61
   3 ?   -2.6   0.1       3.5   5.2e+03      32      44 ..     103     115 ..     100     120 .. 0.82
   4 ?    0.2   0.0      0.49   7.3e+02       9      21 ..     252     267 ..     249     330 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.4e-05
                TTSEEEHHHHHHHHTSSHHHHHHHHH CS
      MarR_2 18 pgrdltvgelarrlglsksavsrilk 43
                ++   +++++ar  g+s+++vsr+l+
  KIR61696.1  5 GP---AMRDVARLAGVSHQTVSRVLN 27
                33...99*****************97 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 7.2
                EEHHHHHHHHTSSHHHHHH CS
      MarR_2 22 ltvgelarrlglsksavsr 40
                l+v++    lg+ + ++ r
  KIR61696.1 38 LRVQAAISQLGYRPNRAAR 56
                6666666777766666655 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3.5
                 TSSHHHHHHHHHH CS
      MarR_2  32 glsksavsrilkr 44 
                 +l++ +++ +++r
  KIR61696.1 103 NLDRDSITAVVER 115
                 6899999999988 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.49
                 HHHHHHHCTTTS...E CS
      MarR_2   9 rvLaaLgrrpgr...d 21 
                  vL+aL+ +++r   +
  KIR61696.1 252 GVLHALHEHGRRvpeE 267
                 5899999998765552 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0022       3.3      14      34 ..       7      27 ..       2      28 .. 0.86
   2 ?    1.8   0.1      0.18   2.7e+02       7      44 ..      41      81 ..      39      83 .. 0.75
   3 ?   -2.1   0.1         3   4.5e+03      27      42 ..     197     212 ..     195     213 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0022
      HTH_28 14 svreaArelgisrrtvyrWik 34
                + r++Ar+ g+s++tv+r ++
  KIR61696.1  7 AMRDVARLAGVSHQTVSRVLN 27
                5689*************9986 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.18
      HTH_28  7 kllaa..GhsvreaArelgisrrtvyrWikryee.gGiagL 44
                +++++  G + + aAr+l ++r++v + +    + +G a+L
  KIR61696.1 41 QAAISqlGYRPNRAARALVTGRSQVLGVVALNTTlYGPASL 81
                6666533557778************9998877777777776 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3
      HTH_28  27 rtvyrWikryeegGia 42 
                  ++ +W+  +++ G +
  KIR61696.1 197 GRIAGWRETLRAAGAE 212
                 6789999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 2018.18
//
Query:       KIR61697.1  [L=911]
Description: hypothetical protein TK50_29580 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-06   27.5   0.0    4.2e-06   26.7   0.0    1.3  1  Peptidase_M48  Peptidase family M48


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.3e-10   4.2e-06       6     192 ..     143     326 ..     140     329 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.3e-10
                    HHHHHHHHHHHHTT-..-EEEEEEE-GGGT...-EEEEESSS-EEEEEEHHHH-SSB-HH.HHHHHHHHHHHHHHTTHHHHH.HHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Peptidase_M48   6 elkevveelakeaglpkpltkvyvvnspkr...NAFalgggknkrivltdgLlkqllsee.elaaVlGHElGHikhrhsvvs.livsllasillll 96 
                     l++ +  l++eagl  + + v+vv  + r   N F  g    +++ l  gL++   +     +aV  HEl+H+ + ++  + l +++ + + l +
     KIR61697.1 143 ALRSALAGLVREAGL--RRPPVFVVSRSARvsgNTFGAGPL--RYVRLDLGLVHAHRTAPpLFRAVVLHELAHVRNADVHLTrLAIAQSWAFPLAV 234
                    5778888999*****..888888888888888888876666..7*********55554441469**************98888************* PP

                    HHHHHTT-SHHHHHTT--S---HHHHHHHHHHTT..HHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHHHHS-SS--HHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48  97 glallisraeedaagafldalavliglliillfl..alSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrsellstHPplleRiq 190
                    ++ ++++  ++      ld    l+++  i+++    + R+rE+ AD+   +l+ + ++++ral   a d +r  + a l   +++ HP  + R+ 
     KIR61697.1 235 LVPVAVNYVGSVPVRRLLDDGWRLAAFALIVQVSvwSVLRAREFAADA---RLTGDDRAAARALL--AGDRRRSGRWARLG-SVFRFHPLAQARVD 324
                    ********9999999999999988888888777744666********5...77775555555543..33333333334443.77888888888887 PP

                    HH CS
                    xx RF
  Peptidase_M48 191 al 192
                    +l
     KIR61697.1 325 TL 326
                    76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 5951.43
//
Query:       KIR61698.1  [L=183]
Description: hypothetical protein TK50_29585 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.062   13.2   1.8       0.11   12.3   1.5    1.6  1  Phage-tail_3  Putative phage tail protein


Domain annotation for each model (and alignments):
>> Phage-tail_3  Putative phage tail protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.5   6.2e-06      0.11     109     158 ..      99     152 ..      97     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.2e-06
  Phage-tail_3 109 gqAqrvaqrllqraraeretvtfslppeylalepGDvveltda....gragvvr 158
                   + A r + r+l+ ++++r++ ++  pp +l+l+pG ++++++     +r+ +++
    KIR61698.1  99 TDAVRGGLRTLRLRWRARRSTALPPPPAALRLRPGQLLRIEEVvtaaARDPAWE 152
                   67888899********************************97765555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1264.25
//
Query:       KIR61699.1  [L=295]
Description: MarR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-11   44.5   0.0    2.6e-11   43.8   0.0    1.4  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    6.1e-10   39.4   0.0    1.1e-09   38.6   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.3e-09   38.1   0.0      2e-09   37.5   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    5.2e-08   32.7   3.2    5.7e-08   32.5   1.0    2.4  2  MarR_2           MarR family
    9.5e-06   26.0   0.0      2e-05   25.0   0.0    1.5  1  HTH_27           Winged helix DNA-binding domain
    1.9e-05   24.5   0.0    4.2e-05   23.4   0.0    1.5  1  MarR             MarR family
    0.00021   21.4   0.0    0.00041   20.5   0.0    1.4  1  HTH_34           Winged helix DNA-binding domain
      0.001   19.0   0.2     0.0036   17.3   0.2    1.9  1  HTH_20           Helix-turn-helix domain
     0.0016   18.4   0.0     0.0058   16.6   0.0    1.9  2  FR47             FR47-like protein
     0.0071   16.3   0.0      0.014   15.3   0.0    1.5  1  Acetyltransf_13  ESCO1/2 acetyl-transferase
  ------ inclusion threshold ------
      0.023   14.8   0.0       0.05   13.7   0.0    1.6  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
       0.04   13.6   0.3      0.094   12.5   0.0    1.7  2  PanZ             Acetyltransferase (GNAT) domain, PanZ
      0.051   13.7   3.5      0.074   13.2   2.0    2.1  2  DprA_WH          DprA winged helix domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   1.9e-14   2.6e-11      28     117 .]     187     273 ..     160     273 .. 0.81

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.9e-14
                     HHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHH.TTE CS
  Acetyltransf_1  28 fsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYek.lGF 117
                     +s +a+ +l+a  d e++G+  ++  p      a+i +++Vs++ rg G+G++Ll++le++a  +g +++ l++  + + a +lY +  G+
      KIR61699.1 187 LSPPAGVFLLATLDAEPVGCGAVKLHPG---APAEIKRVWVSEAVRGLGVGRRLLDELERYAATRGWTAVRLDTNRNLTEALALY-RsAGY 273
                     23344455559***************99...66****************************************************.55997 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   7.7e-13   1.1e-09       3      76 .]     192     275 ..     190     275 .. 0.78

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 7.7e-13
                     EEEEEEEETTEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH.TT....SEEEEE.EEEETHH....HHHHHHHHTTEEE CS
  Acetyltransf_7   3 gevfVaeddgkivGfialslld...aeitrlaVdpeyrgkGiGraLlea.ae....kgiile.qlelnae....kaikfYeklGFee 76 
                     g +++a  d ++vG+ a++l+    aei+r++V+++ rg G+Gr+Ll+  ++    +g   +  ++l+++    +a+++Y++ G++e
      KIR61699.1 192 GVFLLATLDAEPVGCGAVKLHPgapAEIKRVWVSEAVRGLGVGRRLLDElERyaatRG---WtAVRLDTNrnltEALALYRSAGYRE 275
                     668899999********99999*************************96311344566...233444222235689*********86 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.5e-12     2e-09      31     115 ..     192     282 ..     183     288 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.5e-12
  Acetyltransf_10  31 alllvaeeggkivGvielrdgs....hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkavgeeqee 115
                       ++l+a+ + ++vG+++++ +     +i ++ V+++ rg G+g++Ll+++e++a ++g    +l  n +  +a ++Y++ G+++v++  +e
       KIR61699.1 192 GVFLLATLDAEPVGCGAVKLHPgapaEIKRVWVSEAVRGLGVGRRLLDELERYAATRGWTAvRLDTNRNLtEALALYRSAGYREVEPFNTE 282
                      5789999999***9999965555899***************************999999999*****9999**************987766 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   1.0   4.1e-11   5.7e-08       2      61 ..      31      87 ..      30      88 .. 0.96
   2 ?   -2.8   0.0       4.5   6.2e+03       9      19 ..     236     246 ..     235     271 .. 0.63

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 4.1e-11
                T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
      MarR_2  2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61
                g ++aqar+L ++g  +     v++l  rlgl+ + +sr+l+ L+  GLv+  p+ +D+R
  KIR61699.1 31 GRPLAQARLLWEIGPDG---AEVAALRSRLGLDSGHLSRLLRALEGDGLVTVAPAGGDGR 87
                5689************9...6**************************************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.5
                 HHHHHHHCTTT CS
      MarR_2   9 rvLaaLgrrpg 19 
                 r+L +L r   
  KIR61699.1 236 RLLDELERYAA 246
                 67777776653 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.4e-08     2e-05       5      68 .]      36      97 ..      35      97 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.4e-08
      HTH_27  5 qalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68
                qa +L+ i+   ++++ a+l+ rl +++ h s  l++L+  GLv+  +   d+r ++ +lTd+G
  KIR61699.1 36 QARLLWEIG--PDGAEVAALRSRLGLDSGHLSRLLRALEGDGLVTVAPAGGDGRVRQATLTDAG 97
                566899999..899999***************************999999************99 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0     3e-08   4.2e-05      11      57 ..      39      87 ..      35      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3e-08
                HHHHSTT..EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTT CS
        MarR 11 ilyeqgp..lsvseLakklgvskstvtrvldrLekkGlieRskspeDrR 57
                +l+e gp  + v+ L ++lg+++++++r+l++Le +Gl++  +  +D R
  KIR61699.1 39 LLWEIGPdgAEVAALRSRLGLDSGHLSRLLRALEGDGLVTVAPAGGDGR 87
                5677776668899***************************998888888 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     3e-07   0.00041      13      70 ..      46     102 ..      39     106 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3e-07
      HTH_34  13 deadfvelkealeatdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGreafk 70 
                 d a+ + l++ l++ +g+Ls  l++Le  g ++v  +  ++ +    ++T++Gr++++
  KIR61699.1  46 DGAEVAALRSRLGLDSGHLSRLLRALEGDGLVTVAPAGGDG-RVRQATLTDAGRAEWS 102
                 78999*****************************9998877.78899********996 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   2.6e-06    0.0036      12      57 ..      36      80 ..      35      83 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.6e-06
                HHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 12 RrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevv 57
                ++r+l ++ +++g+ +++l  rl+l+   ls+ Lr+Le  gLv+v 
  KIR61699.1 36 QARLLWEI-GPDGAEVAALRSRLGLDSGHLSRLLRALEGDGLVTVA 80
                68999999.***********************************96 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.4   3.3e+03       9      25 ..     127     143 ..     121     173 .. 0.53
   2 !   16.6   0.0   4.2e-06    0.0058      22      80 ..     217     276 ..     207     284 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.4
                 T--EEEEEEE-TTSSEE CS
        FR47   9 lgelaawilrkdggelg 25 
                 l++++a++ r+ + ++ 
  KIR61699.1 127 LVAAMAEVERLLVASMV 143
                 45555555555444433 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 4.2e-06
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-.HHHHHHHHHHT-EEE CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasN.tpsirlyeklGfeki 80 
                  e+  + v + +r+ G g+rl  +l +  a+rg t++ +    N t++ +ly + G+++ 
  KIR61699.1 217 AEIKRVWVSEAVRGLGVGRRLLDELERYAATRGWTAVRLDTNRNlTEALALYRSAGYREV 276
                 6889999**************************99886655555499***********97 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     1e-05     0.014       7      30 ..     219     242 ..     215     251 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1e-05
  Acetyltransf_13   7 isriWvssshRrkgiAtkLldaar 30 
                      i+r+Wvs++ R  g+ ++Lld + 
       KIR61699.1 219 IKRVWVSEAVRGLGVGRRLLDELE 242
                      89*******************875 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.6e-05      0.05      25      61 ..     217     253 ..     198     255 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.6e-05
  Acetyltransf_CG  25 ldfthTeVpeelrGkGiAkkLvkaalddareeglkvv 61 
                       ++  + V+e++rG G++++L ++   +a  +g++ v
       KIR61699.1 217 AEIKRVWVSEAVRGLGVGRRLLDELERYAATRGWTAV 253
                      578899***************************9865 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.6   3.6e+03      47      58 ..     135     146 ..     123     165 .. 0.64
   2 ?   12.5   0.0   6.8e-05     0.094      52     104 ..     208     258 ..     194     278 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.6
        PanZ  47 dRlLgAvkvele 58 
                 +RlL A  v++e
  KIR61699.1 135 ERLLVASMVTIE 146
                 688888777765 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 6.8e-05
        PanZ  52 AvkveledkeaelsdlcVRevTRrRGVgsyLleearrqaPevkswvlaeedvk 104
                 Avk++  ++ ae++ + V e  R  GVg++Ll+e  r a + + w+    d++
  KIR61699.1 208 AVKLHP-GAPAEIKRVWVSEAVRGLGVGRRLLDELERYA-ATRGWTAVRLDTN 258
                 444443.4568999*********************9998.6677776666644 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.0   5.4e-05     0.074      13      61 .]      35      83 ..      28      83 .. 0.92
   2 ?   -2.8   0.0       5.1     7e+03      17      26 ..     195     204 ..     193     206 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.4e-05
     DprA_WH 13 lerrvLaaLgpePvhvDqLvrrtglpaaevsaaLleLELaGlverlpGg 61
                 ++r+L  +gp+   v +L  r+gl+ + +s++L  LE +Glv+  p g
  KIR61699.1 35 AQARLLWEIGPDGAEVAALRSRLGLDSGHLSRLLRALEGDGLVTVAPAG 83
                6899***************************************998865 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.1
     DprA_WH  17 vLaaLgpePv 26 
                 +La L +ePv
  KIR61699.1 195 LLATLDAEPV 204
                 7999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2051.79
//
Query:       KIR61700.1  [L=199]
Description: hypothetical protein TK50_29595 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.076   13.4   0.3       0.53   10.7   0.1    2.1  2  DciA      Dna[CI] antecedent, DciA


Domain annotation for each model (and alignments):
>> DciA  Dna[CI] antecedent, DciA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1     3e-05      0.53      18      59 ..      17      58 ..       7      60 .. 0.84
   2 ?    0.2   0.0     0.056     1e+03      28      55 ..     164     193 ..     144     197 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3e-05
        DciA 18 kalalarllqaWeeivGpelaahcrpvklrdgtLvvevesga 59
                 a++  +ll++W+ ++G ++a  + +++ +++ L + v+ +a
  KIR61700.1 17 GAARRPALLRRWPSLLGLAVATATLAAGADREGLSITVAVAA 58
                5678889**********************7666999887655 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.056
        DciA  28 aWeeivGpelaahcrpvklrdgt..Lvvev 55 
                 + +++v+  la+ c ++ +  g+  Lv+++
  KIR61700.1 164 RRAAVVPRSLAEFCMLLDVPLGVgfLVLAA 193
                 557899999999999988765544466655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1365.15
//
Query:       KIR61701.1  [L=252]
Description: hypothetical protein TK50_29600 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-22   78.7   0.0    4.7e-22   78.2   0.0    1.2  1  IclR      Bacterial transcriptional regulator
      6e-12   45.2   2.0      1e-11   44.5   0.5    2.2  2  HTH_IclR  IclR helix-turn-helix domain
    0.00036   20.5   1.1      0.001   19.1   0.3    2.2  2  HTH_20    Helix-turn-helix domain
     0.0018   18.1   0.5     0.0018   18.1   0.5    2.3  3  MarR_2    MarR family
  ------ inclusion threshold ------
      0.091   13.3   0.0       0.21   12.1   0.0    1.6  1  HTH_27    Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   1.3e-25   4.7e-22       4     128 ..     120     244 ..     117     245 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 1.3e-25
                 EETTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEEEE CS
        IclR   4 ravsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvsgp 102
                 r+ +++G+ +pl+a a++++lLa+l+++++ +ll  + l ++t+    + ++ le+L  +R++Gy +  +E  egv ++Aap+f ++g+ +a v+++g+
  KIR61701.1 120 RLFVRLGQVMPLNAAAAARVLLAYLPPTVAAELLGGSALGEFTPSSPHTVDAVLERLPVIRDRGYDIAADELDEGVWAVAAPVFTSTGRATASVTLAGS 218
                 556789********************************************************************************************* PP

                 TTTSHHHHHHHHHHHHHHHHHHHHHH CS
        IclR 103 tarlteeelkeellalvreaArkisr 128
                 + r+  + ++++ +  v eaA+ +s+
  KIR61701.1 219 SGRFAADAVRSATIRSVTEAAARMSA 244
                 *********************99885 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.5   2.8e-15     1e-11       2      51 ..       4      53 ..       3      54 .. 0.96
   2 ?   -2.0   0.0      0.91   3.3e+03      21      29 ..      86      94 ..      76      96 .. 0.74

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 2.8e-15
                HHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR  2 ldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                + Ral++L+al+ +p ++tl+el+ ++++p  + hR+L+ L e+++v + 
  KIR61701.1  4 VVRALQVLQALSGRPDGMTLQELHLALDIPLGSMHRILAVLREQRFVSRS 53
                89*********************************************986 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.91
                HHHHHHHHT CS
    HTH_IclR 21 lselArrtg 29
                ++el+++tg
  KIR61701.1 86 VRELSQATG 94
                578888887 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.3   2.9e-07     0.001      13      56 ..       8      52 ..       5      54 .. 0.93
   2 ?   -3.5   0.0       3.2   1.2e+04      25      34 ..     233     242 ..     227     246 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.9e-07
                HHHHHHH.STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 13 rrilraL.araegltaselaerldlskntlsyHLrvLeeagLvev 56
                + +l+aL  r++g+t+ el+ +ld++  ++++ L+vL+e  +v +
  KIR61701.1  8 LQVLQALsGRPDGMTLQELHLALDIPLGSMHRILAVLREQRFVSR 52
                579999*99******************************999975 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.2
                 B-HHHHHHHH CS
      HTH_20  25 ltaselaerl 34 
                 ++++e a+r+
  KIR61701.1 233 RSVTEAAARM 242
                 5677777776 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.5   4.9e-07    0.0018       8      60 ..       8      57 ..       5      58 .. 0.92
   2 ?   -2.9   0.1       1.8   6.4e+03      36      48 ..      80      92 ..      80      92 .. 0.84
   3 ?   -4.0   0.1       4.2   1.5e+04      38      45 ..     235     242 ..     231     244 .. 0.55

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4.9e-07
                HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSS CS
      MarR_2  8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDk 60
                ++vL aL  rp++ +t +el  +l+++ ++++ril+ L ++ +v r+p   D+
  KIR61701.1  8 LQVLQALSGRPDG-MTLQELHLALDIPLGSMHRILAVLREQRFVSRSPI--DL 57
                79*********98.9******************************9974..55 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.8
                HHHHHHHHHHHHT CS
      MarR_2 36 savsrilkrLvaa 48
                ++++ ++++L++a
  KIR61701.1 80 QSLTTVVRELSQA 92
                7899999999876 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 4.2
                 HHHHHHHH CS
      MarR_2  38 vsrilkrL 45 
                 v+ + +r+
  KIR61701.1 235 VTEAAARM 242
                 44445554 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.7e-05      0.21       7      58 ..       9      58 ..       6      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.7e-05
      HTH_27  7 lvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrr 58
                +vL  + +r ++++l +l+ +l++   +++ +l  L e+ +v  ++++ d r
  KIR61701.1  9 QVLQALSGRPDGMTLQELHLALDIPLGSMHRILAVLREQRFV--SRSPIDLR 58
                688888999*********************************..66666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1707.09
//
Query:       KIR61702.1  [L=223]
Description: hypothetical protein TK50_29605 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-18   67.0   0.0    2.2e-18   66.5   0.0    1.2  1  MOSC      MOSC domain
  ------ inclusion threshold ------
       0.16   11.9   0.5       0.37   10.7   0.5    1.6  1  3-alpha   3-alpha domain


Domain annotation for each model (and alignments):
>> MOSC  MOSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   2.5e-22   2.2e-18       3     130 ..      53     163 ..      51     164 .. 0.90

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 2.5e-22
                 X---GGGGSEEEEETHHHHHHHHHS..GGGGG-STTTT--SEEE.S-.......-TTT-BTT-E.EEETT................EE----THHHH.H CS
        MOSC   3 kihggdekavllisresldalneelkegrsveldpgrfreNivv.ggaaafeEdtwkelrigdrrfrlggacsRcqmvnvdqetgarprepcktlak.f 99 
                 + hgg+++ vl +s+e +  +++ l+ +     ++++++eN+++ g+       t+ ++++gd+ f +g+a            ++a+pr+pc ++a+ +
  KIR61702.1  53 ETHGGPDRVVLSYSTENYGFWRDTLGLD---LPQYAALGENFTTtGL-------TEFDVHVGDV-FAVGEA----------VVQAAQPRSPCHKVAArH 130
                 78***********************666...5899*********888.......**********.****94..........23456***********88 PP

                 ..TTHHHHHHHHT---EEEEEEE-EEEETTS-E CS
        MOSC 100 ..rrvdkrvkgkgrfGvylrvleegtvrvGdev 130
                   +r+  +v ++ r+G+++rvl+eg+vrvGd++
  KIR61702.1 131 rrPRFTIEVARSHRTGILYRVLREGVVRVGDTM 163
                 7778888888*********************87 PP

>> 3-alpha  3-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   4.1e-05      0.37       2      42 ..     174     213 ..     174     215 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.1e-05
                 BHHHHHHHHHTS---HHHHHHHHTSTT--HHHHHHHHHHHH CS
     3-alpha   2 tVarvnallyhdkldrealrrllelpaLspsWrktfekRLe 42 
                 ++a++n++l +++ d+ + ++ll+++ L++  ++ +++R++
  KIR61702.1 174 SIADANRILIDRR-DISGAHALLRVDSLAEAKKAELRDRIA 213
                 7999999998877.*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1482.17
//
Query:       KIR61703.1  [L=67]
Description: hypothetical protein TK50_29610 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-15   55.4   1.0    8.6e-15   55.2   1.0    1.0  1  Fer4_15   4Fe-4S single cluster domain
    2.4e-09   37.6   0.1    2.7e-09   37.4   0.1    1.0  1  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I
     0.0001   22.3   0.0    0.00015   21.7   0.0    1.3  1  Fer4_19   Divergent 4Fe-4S mono-cluster


Domain annotation for each model (and alignments):
>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   1.0   1.4e-18   8.6e-15       1      65 [.       4      61 ..       4      62 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 1.4e-18
     Fer4_15  1 VvvDrdaCigcglCvaeapevfeldedglasvllddgeiaegevpddeeeaaqeAaraCPvdAIr 65
                V+vD d+C+g ++Cv +ap+++ ld +g+a+ l       ++++pd++e + +eAa++CP+ AIr
  KIR61703.1  4 VHVDLDLCQGFANCVMVAPDLVDLDANGKAVAL-------RETFPDTDEGELREAAESCPAVAIR 61
                89****************************555.......68**********************8 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.1   4.6e-13   2.7e-09       1      57 [.       6      61 ..       6      62 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 4.6e-13
     Fer4_13  1 VDrdtCiacgaCvelaPdvFeeddeggasvvaeqptseeekadaeeAadaCPvesIg 57
                VD d C + ++Cv++aPd+ + d + g++v  ++  +++++ +++eAa++CP  +I+
  KIR61703.1  6 VDLDLCQGFANCVMVAPDLVDLDAN-GKAVALRETFPDTDEGELREAAESCPAVAIR 61
                899*********************9.666777888889999************9997 PP

>> Fer4_19  Divergent 4Fe-4S mono-cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.6e-08   0.00015       6      61 ..       2      62 ..       1      65 [. 0.82

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.6e-08
     Fer4_19  6 itiednrelCihsgnCvkglpevFdpkrkpwi.....kpdeasteeiievverCPSGALsy 61
                i+++ + +lC++ +nCv  +p++ d+++++       +   ++  e++e++e+CP  A+++
  KIR61703.1  2 IRVHVDLDLCQGFANCVMVAPDLVDLDANGKAvalreTFPDTDEGELREAAESCPAVAIRL 62
                89*************************99766466653344555899********888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 521.15
//
Query:       KIR61704.1  [L=343]
Description: hypothetical protein TK50_29620 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-65  219.8   0.1    7.2e-65  219.5   0.1    1.0  1  IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase


Domain annotation for each model (and alignments):
>> IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.5   0.1     4e-69   7.2e-65       1     304 [.      10     326 ..      10     327 .. 0.88

  Alignments for each domain:
  == domain 1  score: 219.5 bits;  conditional E-value: 4e-69
                   EEEEEEE--S.......HHHHHHHHHHHCTHTTEEEEEEEE-SSSS-HHHHHHHHHHHHHHHCTTT.S-EEEE-SS-SSSS.....S-SHHHHTTTS CS
  IU_nuc_hydro   1 rkvilDtDpG.......iDDalAlllalaespeiellgittvaGnvsleqatrnalrvlealggrddipvyaGaekpllre.....kaaaeihGedG 85 
                   r++i+D+DpG       iDD lAl+la+a+ ++i l +it+v+Gn++ +q+ + a+ ++ +l g d ipvyaGa + ll++     + ++++  +d 
    KIR61704.1  10 RRIIVDCDPGngvpgadIDDGLALALAVAS-DAIGLDMITVVSGNTHRDQGYAVARTFV-DLVGLD-IPVYAGAGTALLEPsgpwrSRQDQVTRSDA 103
                   689******998888999*********995.99**************************.777688.*********999988888766777999999 PP

                   STSS..-.--SSHCSCSSHHHHHHHHHHHHCHHTTTTEEEEECS-SHHHHHHHHHTCCHHHHEEEEEEE---SSS--SSSSSS-HHHHHSHHHHHHH CS
  IU_nuc_hydro  86 lgdv..llpeperkaesesavdalidaveaareypgevtlvatGplTNiAlalrldpelakkvkrlviMGGaftarGNvtpvaEfNifvDPeAAkiV 180
                   +  +    p+  ++ ++ +a  a +++v+ +r++pge+t+va+GplTN+A al+ldp l++ v+++v+MGGaf+ +G    ++E N+ +DP+AA+ V
    KIR61704.1 104 VRAAwsAVPP-PDPHDPGAAFGAAAEIVRHVRAHPGEITIVAIGPLTNVAQALQLDPGLPEVVREIVVMGGAFDVPGF---LQELNFGIDPDAARAV 196
                   9755442222.34555666666778889999****99*************************************8865...59************** PP

                   HHT.S-E.EEEE-HHHHTTSCHEECHHHHHHHHCSTCBHHHHHHHHHHHHHHHHHHHHHSSEEE-HHHHHHHHHH-GGGEEEEEEEEEEESSSSTTT CS
  IU_nuc_hydro 181 les.apvkitlvpldvthkvqalltseeveelaalekglgafladllefyikaykeaegsdgaplhDplavavaldpelvttkrlavdveleggltr 276
                   l+s +pv  tl+pld+t+  q+ll +e+++ + a ++ l +++ ++++ +i+ ++  +g+ g+ lhDplava+++dp +vt +++ vdve++g+ltr
    KIR61704.1 197 LTSgCPV--TLLPLDATS--QTLLRHEDLDLVDAERSALARYVVQTTRPWIDLAAAWRGIGGCLLHDPLAVALLVDPGIVTVEEMMVDVETRGTLTR 289
                   *999998..********9..87888888888766655666689999999***9999999*********************99*************** PP

                   TEEEEETSTT.........TTS--EEEEEEE-HHHHH CS
  IU_nuc_hydro 277 Grtvvdlrrl.........kkaknvkvatevdverfl 304
                   Gr v+ +r++         ++ak+v+++++vd++r+l
    KIR61704.1 290 GRPVAWTRENlrlhvgldiSRAKPVRIVKTVDNDRLL 326
                   ***775555599**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2487.44
//
Query:       KIR61705.1  [L=284]
Description: hypothetical protein TK50_29625 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-08   35.1  19.9    1.1e-08   35.1  19.9    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        1.1    8.8   0.0        1.1    8.8   0.0    3.0  3  DUF4244       Protein of unknown function (DUF4244)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3      0.12   1.1e+03      43      44 ..      37      71 ..      17     100 .. 0.41
   2 !   35.1  19.9   1.2e-12   1.1e-08       5     179 ..      98     273 ..      94     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.12
  BPD_transp_1 43 f.................................v 44
                  +                                 v
    KIR61705.1 37 VsslrpgeeifrylspvsvrtvvpstvsldnyraV 71
                  24444444444444444444444443333333332 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 1.2e-12
  BPD_transp_1   5 Gilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsa..apyvrlirraalrslpkdlveaaralGasrw 95 
                   ++laa    +  ++++ +l +++ v + +P+ ++ai+l       s +  + l   ++ l+l a   ++++++ r+++  +p++l eaar++G+s +
    KIR61705.1  98 SSLAAfalAMIPFPGRAALFGVMVVSFLVPFEAIAIPLA------STFREADLQnTLVGLILPAvgNGLAIFLLRQFFLGIPTSLSEAARMDGLSWF 188
                   5555566669999**************************......7777666655655555554116799999************************ PP

  BPD_transp_1  96 qifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis....nggvlalviavlllnlvadilqrll 179
                    i+ ++ lP++  +++   ++ f++ +  ++++++++  p+   +++ +  + d+++ s      +++a+++  ++ +lv+ + qr +
    KIR61705.1 189 GIYLRIYLPLSRASMVGAGLILFVFQWQSFLWPLLIAPAPA---VRVAPVAIADFAQESgvdyGQMFAAATLTAVVPLLVLLFAQRQF 273
                   *************************************6655...55555555555555555554466666666666666666666655 PP

>> DUF4244  Protein of unknown function (DUF4244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00012       1.1      20      38 ..      21      39 ..       7      41 .. 0.92
   2 ?    0.6   2.0     0.042   3.8e+02      19      31 ..      96     108 ..      94     108 .. 0.91
   3 ?   -2.9   0.7      0.52   4.7e+03      22      31 ..     251     260 ..     250     265 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00012
     DUF4244 20 vgtlAAvafAavLykvvts 38
                v+ +AA a A +L++vv+s
  KIR61705.1 21 VVPVAALAVAPLLWAVVSS 39
                788**************98 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.042
     DUF4244  19 AvgtlAAvafAav 31 
                 Av  lAA a+A++
  KIR61705.1  96 AVSSLAAFALAMI 108
                 8999*******86 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.52
     DUF4244  22 tlAAvafAav 31 
                 + AA+++ av
  KIR61705.1 251 MFAAATLTAV 260
                 5688888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2014.78
//
Query:       KIR61706.1  [L=323]
Description: hypothetical protein TK50_29640 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-56  190.2   2.9    5.6e-56  190.0   2.9    1.0  1  PfkB          pfkB family carbohydrate kinase
    5.9e-06   25.8   0.0    1.1e-05   25.0   0.0    1.3  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
  ------ inclusion threshold ------
      0.049   13.0   0.1       0.09   12.2   0.1    1.3  1  CHAT          CHAT domain


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.0   2.9   9.4e-60   5.6e-56       3     301 ..      10     308 ..       8     309 .. 0.97

  Alignments for each domain:
  == domain 1  score: 190.0 bits;  conditional E-value: 9.4e-60
                 EEEEEEEEEEEEEEECSSH..TTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETT CS
        PfkB   3 kvvviGealidliavsekl..egelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvde 99 
                 k +viG++  d ++++ +l  +ge+v  +  + + GG+gaN+Ava+ar+g++ a++gavGdD+ ++f++++l ++gv ++ v ++++ +tg a++vv++
  KIR61706.1  10 KALVIGSVHHDRSLDVPRLprRGETVLSGGARDGLGGKGANQAVAIARMGVSCALLGAVGDDTSAAFVRDQLVAHGVSVAQVGVVPGRHTGRATVVVEA 108
                 6789*********************************************************************************************** PP

                 TSEEEEEEEEGGGGGHHHHHHH.HHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTE.EEEEECESSSHHHHHHHHHHHCTESEEEEEHHHHHH CS
        PfkB 100 dgertivfnrgaaadltkeele.ededlleeadllyisgllsselpeavleelaeaaknggt.fdpnlldplgaqfkeallellaladllkpneeElea 196
                 +ge+ iv+ +g+   ++ + ++ + +d  +  +++++ g    e+p +vl+ +a+ a ++gt f++nl +  +     +  e l++ad l +ne+E+  
  KIR61706.1 109 TGENLIVVEPGPVDRIDRATVDaNLRDHAAPPTVVVVQG----EVPPRVLAWAADSAGAAGTrFVLNLAPVVP-----VAPETLRQADPLVVNEHEAGD 198
                 **********************9****************....******************999999998888.....7889999************** PP

                 HHTSCT......HSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH CS
        PfkB 197 ltgekl......edieealaalhklkakgaktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalv 289
                 l++  +      +d+++a+ ++  l+a+ga+ vvvtlG+ Ga+++++ +  +  a+ + +v DttGAGD+f+g ++aal++g+sl+ea r + a+A+l+
  KIR61706.1 199 LLELLDggparvVDVDDAIGVARRLVAAGARSVVVTLGAGGAVLADGPTARHLAAF-PATVADTTGAGDCFTGTLAAALANGHSLAEATRWGLAAASLA 296
                 *********************************************99999999995.599*************************************** PP

                 HTSSSSSTCSCC CS
        PfkB 290 vqkkgaiaslpt 301
                 v ++ga+++ pt
  KIR61706.1 297 VGRPGAASAYPT 308
                 *******99987 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.8e-09   1.1e-05     116     224 ..     182     289 ..     169     301 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.8e-09
                   TGGG-SEEE-BHHHHHHHHT......---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S--BTHHHHHHHH CS
  Phos_pyr_kin 116 LlplatvitPNlpEaeaLlg......ekikteedmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveeleaerietknthGtGCtlssa 206
                    l++a+ ++ N  Ea  Ll+       ++ +++d+  +a++l++ ga++V+++ g           vl dg + ++l a   +  +t G+G+ +   
    KIR61706.1 182 TLRQADPLVVNEHEAGDLLElldggpARVVDVDDAIGVARRLVAAGARSVVVTLGAG----G---AVLADGPTARHLAAFPATVADTTGAGDCFTGT 271
                   5667777888889998777776677777889**********************9983....3...479999999999999999999*********** PP

                   HHHHHHCTSSHHHHHHHH CS
  Phos_pyr_kin 207 iaaelakgesleeAvkkA 224
                   +aa la+g+sl eA +++
    KIR61706.1 272 LAAALANGHSLAEATRWG 289
                   **************9987 PP

>> CHAT  CHAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.5e-05      0.09     203     230 ..     208     235 ..     200     237 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.5e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CHAT 203 gevidgegvlgLaralllaGarsviasl 230
                  +v d ++ +g+ar+l++aGarsv+++l
  KIR61706.1 208 ARVVDVDDAIGVARRLVAAGARSVVVTL 235
                 4566899*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2225.12
//
Query:       KIR61707.1  [L=149]
Description: hypothetical protein TK50_29655 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.22   11.2   0.0       0.31   10.7   0.0    1.2  1  ToxS      Trans-membrane regulatory protein ToxS


Domain annotation for each model (and alignments):
>> ToxS  Trans-membrane regulatory protein ToxS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.7e-05      0.31     120     140 ..      69      89 ..      54      98 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.7e-05
        ToxS 120 daeqsrridivnektlLltsL 140
                  a +srr+ +v+e+ lL+ts 
  KIR61707.1  69 AAMRSRRVTVVQERGLLFTSA 89 
                 5889***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1073.89
//
Query:       KIR61708.1  [L=414]
Description: hypothetical protein TK50_29670 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-22   80.0   0.1    2.5e-22   79.6   0.1    1.1  1  Amidohydro_1  Amidohydrolase family
    0.00051   20.0   0.0     0.0022   17.9   0.0    1.9  1  DHOase        Dihydro-orotase-like


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.1   2.8e-26   2.5e-22       1     343 [.      41     412 ..      41     413 .. 0.81

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 2.8e-26
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTHHHHHHHHHHHTSSSEEEEEEESSEGGSGCCCSHHHH CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattstgiealleaaeelplglrilggkvsldrgsaetskas 97 
                   ivlP+l+D+H+Hl+             +p++  ae l+sg+++a  +G   v +m +t++ +++++ + a+ l                   ++ ++
    KIR61708.1  41 IVLPALVDLHTHLR-------------DPGHPEAEDLRSGTAAAAAGGYSDVFAMANTAP-PTDRVSRVADLL----------------ARVPRGTT 107
                   79***********9.............9*****************************886.788888888874................33444444 PP

                   HHHHHHHHHHHHHHCTTTCEE.EEEEECGTCCSHHH........HHHHHHHHHHHHTTEEEEEE....TSSCHHHHHHHHHHTTTEEEETTTTSTCC CS
  Amidohydro_1  98 reklkagaaetikgkadgvvk.valapheapafsde........elkealkeakkrdlpvaiHa....letkgevedaeaafgetiehgthlevaes 181
                   r++ ++ +  t    ++ +v+ +al  ++   fsd+        +++++l++ ++ ++ +a Ha    +   g v +++aa ++ + +  +  + e+
    KIR61708.1 108 RVHPVSAV--TRDLAGRRLVDvPALVAAGVRVFSDDgrcvadpaLVRAMLEASRELGVVFAQHAqdplAVGAGVVNARVAARAGAAPW--PAAG-EE 199
                   44444444..4444445566667777777777777777777776999999999999********888777777787778877777777..5555.66 PP

                   HHTTTHCCEEEHCTCEEE....HH.HHHHHHHHHHHHCEE........HHHHHHHH...............SEHHHHHHHHHHHHTSCEEEEEECT. CS
  Amidohydro_1 182 lglldeiklilahgvhlt....pt.eaellkerlkeagva........hcpfsnsi...............lrsgrealrkaldeGvkvglgtDga. 249
                     + +++ +++ +g hl+     t  ++ l++++k++gv         h+  +++                 + ++ alr al +G++ +++tD+a 
    KIR61708.1 200 RVVDRDLSIAADTGGHLHvchlSTaGSVELIRQAKRSGVRvtcevtphHLVLDDEAalraggalkvnpplrAAADVLALRAALADGTIDVVATDHAp 296
                   7888899***********8876336888999999*******999999855555555789999999999999************************** PP

                   ........TSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSS.S-TTSB--EEEECC..CT...........CGG CS
  Amidohydro_1 250 ........asgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGs.ievGkdADlvvvdl..di...........laa 324
                           +  +s+  l++l  al +   +l+  ++g ++++++ ++ +  +A++ g+++++G+ + vG +ADl vv++   +           +++
    KIR61708.1 297 hpqatktrGWADSAFGLTGLETALSVVATVLRAPDTGRVDWARLTEVLSVVPARIGGIAHRAGRpVRVGEPADLCVVETgvRPirvdrhrsrsrNNP 393
                   **988888333333334556666666666667766999*************************99**************883358888999****** PP

                   GTTTCTSEEEEEEEETTEE CS
  Amidohydro_1 325 fvglkkdgnvkkvivkGkl 343
                   f g++    v+++ v+G++
    KIR61708.1 394 FGGWTVRERVVRTLVGGRV 412
                   *****************86 PP

>> DHOase  Dihydro-orotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.4e-07    0.0022       2     140 ..      40     224 ..      39     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.4e-07
      DHOase   2 rllvpglidlavhlrelsg.eakeliet........tvaaygvtfkaP................................aaitveddsee........ 51 
                 r+++p+l+dl+ hlr ++  ea++l +           + +++++ aP                                a                  
  KIR61708.1  40 RIVLPALVDLHTHLRDPGHpEAEDLRSGtaaaaaggYSDVFAMANTAPptdrvsrvadllarvprgttrvhpvsavtrdlA---------Grrlvdvpa 129
                 899**************9548999998756666666334455666677789999998888888888777776644444441.........034666666 PP

      DHOase  52 .....afiltddtvyvtiqllefeglkk.aeLdqalkaiaeDDevtnqsavqdfelarfyGvqLkG.vCeaekivydvLlakaagcgfyvsiiytk 140
                        +++dd+  v   +l    l+   eL+ +  ++a+D  +  ++ v +  +a + G+     + e+  + +d+ +a ++g + +v++++t 
  KIR61708.1 130 lvaagVRVFSDDGRCVADPALVRAMLEAsRELGVVFAQHAQD-PLAVGAGVVNARVAARAGAAPWPaAGEERVVDRDLSIAADTGGHLHVCHLSTA 224
                 666667799*********9999999988889*****999986.688888899999999999876653667777779999**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2892.91
//
Query:       KIR61709.1  [L=417]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-44  151.6  55.8    2.3e-44  151.6  55.8    1.9  2  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       0.2   3.6e+03      56      64 ..      45      53 ..      27      59 .. 0.49
   2 !  151.6  55.8   1.3e-48   2.3e-44       1     268 []      68     403 ..      68     403 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.2
  BPD_transp_2 56 llallvall 64
                  ++al+v ++
    KIR61709.1 45 FVALVVIVA 53
                  222222222 PP

  == domain 2  score: 151.6 bits;  conditional E-value: 1.3e-48
  BPD_transp_2   1 gilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvg 97 
                   +i n++ + + ++ +A+G+ +v+ i+G i+l++g+++al + v+a+l+ +++ +++l++l+al+vg+avg++ g+ v++ +++ +i+tl+++++++g
    KIR61709.1  68 NITNIVLQYSYILVLAIGMVIVI-IGGHIDLSVGSVVALTGAVSAVLVIQQGHPWWLGVLAALAVGLAVGAWHGFWVAYAGIPAFIVTLAGMLLFRG 163
                   589********************.***************966666666666666******************************************* PP

  BPD_transp_2  98 ltlllltgitsgvkgqssvkellgfagallsflsaviv........................................................... 135
                   ltl +l +i+  ++  + ++ ++gf   ll   ++  +                                                           
    KIR61709.1 164 LTLRVLDNISLSPFPAEYQQIAAGFLNGLLGGQGFDAFtlligavavagyavggfrtrvariryqqpvesfplfvarvvlvgavvmyfawqlaharg 260
                   *************************99999988888889********************************************************** PP

  BPD_transp_2 136 .....llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAglaGallalllgsippnigvglgfnaiaavvlGga.. 225
                        +++++lvla  ll rrt+fGr+++a+g+n  aa ++G++vk v++++fv  g+l+++aG++++ ++++++p +g +++++aiaa+++Gga  
    KIR61709.1 261 lpivlIVLAVLVLAYGLLTRRTVFGRQVYAIGGNLPAAMLSGVKVKTVNFWVFVNMGFLSAVAGIIYSSRSNGAQPAAGNMFELDAIAAAFIGGAav 357
                   ***9999999999999********************************************************************************* PP

  BPD_transp_2 226 ....gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                       g+++g+++G+li++v+++ +++l+g+++++++v+ g++l++++
    KIR61709.1 358 tggvGTVVGAMVGGLIMAVMSN-GMQLMGVDQSMQSVVKGLVLLVAV 403
                   **********************.*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1232  (0.0687155); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 2689.72
//
Query:       KIR61710.1  [L=511]
Description: ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-49  166.0   0.0    1.6e-28   99.9   0.0    2.2  2  ABC_tran        ABC transporter
    9.3e-09   35.5   0.3      0.016   15.0   0.0    3.4  3  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    0.00036   19.4   1.0       0.41    9.4   0.0    2.9  2  ABC_ATPase      Predicted ATPase of the ABC class
    0.00043   19.8   0.1       0.61    9.5   0.0    2.6  2  SMC_N           RecF/RecN/SMC N terminal domain
    0.00048   19.8   0.0     0.0033   17.1   0.0    2.3  2  AAA_29          P-loop containing region of AAA domain
    0.00055   19.7   1.2       0.64    9.7   0.0    3.4  4  AAA_30          AAA domain
    0.00058   20.1   0.9       0.22   11.8   0.0    3.1  3  AAA_22          AAA domain
     0.0011   19.6   0.0     0.0019   18.7   0.0    1.4  1  AAA_23          AAA domain
     0.0016   18.9   1.7       0.62   10.4   0.5    2.6  2  AAA_16          AAA ATPase domain
     0.0044   16.8   0.0      0.035   13.8   0.0    1.9  2  AAA_15          AAA ATPase domain
  ------ inclusion threshold ------
       0.01   15.7   0.2      0.055   13.4   0.0    2.2  3  RsgA_GTPase     RsgA GTPase
      0.044   14.0   0.3         13    6.1   0.0    3.0  2  SbcCD_C         Putative exonuclease SbcCD, C subunit
      0.052   13.8   0.2       0.36   11.1   0.1    2.2  2  CobA_CobO_BtuR  ATP:corrinoid adenosyltransferase BtuR/CobO/C
      0.055   13.6   0.0       0.12   12.4   0.0    1.5  1  RepB            RepB plasmid partitioning protein
      0.068   12.8   0.0        4.9    6.7   0.0    2.7  3  ATP-synt_ab     ATP synthase alpha/beta family, nucleotide-bi
      0.069   12.7   0.6        4.5    6.8   0.0    3.1  3  AAA_25          AAA domain
      0.074   13.6   1.9         14    6.2   0.4    3.8  4  AAA_18          AAA domain
      0.081   12.5   0.0       0.17   11.4   0.0    1.5  1  AAA_27          AAA domain
       0.12   12.4   0.5         27    4.8   0.0    3.0  3  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
       0.13   11.3   0.0       0.28   10.3   0.0    1.5  1  MCM             MCM P-loop domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.0   1.8e-31   1.6e-28       1     137 []      21     173 ..      21     173 .. 0.95
   2 !   64.1   0.0   2.1e-20   1.8e-17       2     136 ..     281     436 ..     280     437 .. 0.90

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 1.8e-31
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................. 79 
                 l++vs+++++ge++ai GenGaGKStL+k+l+g +      Gei +dg++++    + s  + i +++qe  l p+l+++en                 
  KIR61710.1  21 LQDVSITVRRGEIHAICGENGAGKSTLMKVLSGVYPSgsYDGEIVFDGHPVHFrGIRDSEAHGIVIIHQELALVPHLSIAENiflgnerrgrsglidwn 119
                 789********************************988899***********96667777889*******************************99988 PP

                 HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  ++++++++l+++gl e + t++    + L  G++q v++a+al kk kll+lDEpta
  KIR61710.1 120 RANADATALLESVGLRENAVTPI----AALGVGKQQLVEIAKALSKKVKLLILDEPTA 173
                 88888************999998....*****************************97 PP

  == domain 2  score: 64.1 bits;  conditional E-value: 2.1e-20
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS.....--S-TTSBHHHH............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.....xxxxxxxxxxxx............. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlke.qeleslrkeigvlpqe.....pqlfpeltvren............. 79 
                 ++v +++++ge+v+i G  GaG + L++ + g +     +G++ l+g++++  +  e   + i++ +++      +l ++  +r n             
  KIR61710.1 281 DDVGFTVRAGEVVGIAGLMGAGRTELAMSIFGRSYGrdISGRLFLRGRPIRArTVAEAIGNGIAYATEDrkrygLNLIDD--IRHNvsaaalrklarlg 377
                 899******************************987679************9788999***********76533333333..45558899********* PP

                 ..HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ..esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                   +++eei  a ++ ++ ++k+  v     +LSgG +q+v+l + l+++p++l+lDEpt
  KIR61710.1 378 wvHDNEEIRVAEASRRDMNIKAPSVMATVGKLSGGNQQKVVLSKWLFTDPDVLILDEPT 436
                 *9999999999999999999999999999*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.8e-05     0.016       2      22 ..      34      54 ..      33      74 .. 0.85
   2 !    7.8   0.1    0.0029       2.6     244     297 ..     152     202 ..     116     207 .. 0.82
   3 !    8.8   0.0    0.0014       1.3     235     296 ..     407     466 ..     345     472 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.8e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                 ++ G Ng+GKS+L++ l+++
  KIR61710.1 34 HAICGENGAGKSTLMKVLSGV 54
                689***************987 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0029
      AAA_21 244 llalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 l  ++ al       +ll++DEp + L+    ++ll+ll++l++ g+ +i+ +H
  KIR61710.1 152 LVEIAKALSKKV---KLLILDEPTAALNDVDSAHLLDLLRRLRDQGITCIMISH 202
                 444444444433...9*************999********************** PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0014
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltT 296
                  +lS G ++   l  +l+ ++   ++l++DEp  g++  +  ++++++++l + ++a v++++
  KIR61710.1 407 GKLSGGNQQKVVLSKWLFTDP---DVLILDEPTRGIDVGAKFEIYTIVNRLVAqGKAVVLISS 466
                 567888888888888999988...9**********************9777773444446665 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00045      0.41     241     276 ..      27      62 ..      22      67 .. 0.87
   2 !    6.6   0.2    0.0032       2.9     331     410 ..     153     216 ..     146     225 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00045
                 EE-SS.EEEEEE-TTSSHHHHHHHHHHCCSEE-TTSS CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAlekGvynhvpgDG 276
                  +++G + +I G +  GKsTL++ l +Gvy+    DG
  KIR61710.1  27 TVRRGeIHAICGENGAGKSTLMKVL-SGVYPSGSYDG 62 
                 688999*****************98.59998777776 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0032
                 HHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEE CS
  ABC_ATPase 331 animealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvil 410
                 ++i++al  + kll++DE t+A N +   +++               d++r+l ++ g++ i+++  +g+ +++Ad + +
  KIR61710.1 153 VEIAKALSKKVKLLILDEPTAALNDVDSAHLL---------------DLLRRL-RDQGITCIMISHKLGEITAIADSITV 216
                 67889999999999999999998855433333...............555555.45555555555555555555555555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00068      0.61      25      43 ..      32      50 ..      19      55 .. 0.82
   2 !    7.4   0.0     0.003       2.7     136     209 ..     144     214 ..     100     224 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00068
                SEEEEEESTTSSHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldA 43
                ++ ai G+NG+GKs l+  
  KIR61710.1 32 EIHAICGENGAGKSTLMKV 50
                5889***********9976 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.003
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklv 209
                 +L  G+++Lv +a        k+  l +lDe  aaL +   + + +ll++ +++    i+is++ + ++     +
  KIR61710.1 144 ALGVGKQQLVEIAKA----LSKKVKLLILDEPTAALNDVDSAHLLDLLRRLRDQgITCIMISHKLGEITAIADSI 214
                 555666666665544....34677899**********************99988799999**9987766655444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.6e-06    0.0033      14      39 ..      23      48 ..      19      56 .. 0.82
   2 ?   -1.6   0.0       2.6   2.3e+03      25      40 ..     102     117 ..      95     120 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.6e-06
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTll 39
                + +i++++ +++ + G++G+GKSTl+
  KIR61710.1 23 DVSITVRRGEIHAICGENGAGKSTLM 48
                4567777666***************8 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.6
      AAA_29  25 tlltGpsGsGKSTllD 40 
                  ++ G+   G S l+D
  KIR61710.1 102 NIFLGNERRGRSGLID 117
                 678999999*****99 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00071      0.64      17      43 ..      30      56 ..      21      66 .. 0.82
   2 !    6.4   0.1    0.0076       6.8      59     122 ..     125     200 ..     116     204 .. 0.69
   3 ?   -1.4   0.0       1.8   1.6e+03     165     191 ..     357     383 ..     350     384 .. 0.85
   4 ?   -1.6   0.0       2.1   1.9e+03      58      96 ..     387     434 ..     364     439 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00071
      AAA_30 17 gdrvavltGpAGtGKttalkalreawe 43
                +  ++++ G  G+GK+t++k+l  ++ 
  KIR61710.1 30 RGEIHAICGENGAGKSTLMKVLSGVYP 56
                4568999**************998876 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0076
      AAA_30  59 AkvLaeelgi..eastiakllkrlk.........grarlepg.tllivDEagmv....dtkqlaallkaaekagakvilv 122
                 A +L e++g+  +a t    l   +         + ++l+++ +lli DE   +    d+++l +ll++++++g+++i++
  KIR61710.1 125 ATALLESVGLreNAVTPIAAL---GvgkqqlveiA-KALSKKvKLLILDEPTAAlndvDSAHLLDLLRRLRDQGITCIMI 200
                 555666666533233322222...12335677753.4566777*******98877788999**************99987 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.8
      AAA_30 165 aalalregdaeealealadrgrihegd 191
                 + +++r++  ++al++la+ g++h+ +
  KIR61710.1 357 LIDDIRHNVSAAALRKLARLGWVHDNE 383
                 567899999999***********9875 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 2.1
      AAA_30  58 aAkvLaeelgieastiakllkrlk.........grarlepgtllivDE 96 
                 +A++ +++++i+a ++   + +l          +++ +++ ++li DE
  KIR61710.1 387 VAEASRRDMNIKAPSVMATVGKLSggnqqkvvlSKWLFTDPDVLILDE 434
                 445555566666666666665555666677777556667778888887 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00025      0.22       5      25 ..      31      51 ..      28      69 .. 0.87
   2 ?    5.3   0.1     0.025        22      81     123 ..     151     195 ..     120     205 .. 0.63
   3 ?   -2.5   0.0       6.3   5.7e+03      92     115 ..     353     376 ..     327     386 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00025
      AAA_22  5 agilvvtGesGtGKTtllrrl 25
                  i +++Ge G+GK+tl++ l
  KIR61710.1 31 GEIHAICGENGAGKSTLMKVL 51
                56779************9865 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.025
      AAA_22  81 aleqalrarav.ielliiDEaqh.lr...seealeeLrsllnlsrkgv 123
                 +l + ++a ++ ++lli+DE    l+   s+ +l  Lr+l +  + g+
  KIR61710.1 151 QLVEIAKALSKkVKLLILDEPTAaLNdvdSAHLLDLLRRLRD--Q-GI 195
                 33333333333567******9998988866777777788877..3.33 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 6.3
      AAA_22  92 ielliiDEaqh.lrseealeeLrsl 115
                  +l +iD++ h + s++al++L +l
  KIR61710.1 353 YGLNLIDDIRHnV-SAAALRKLARL 376
                 4677888888878.88888888665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.2e-06    0.0019       8      39 ..      19      51 ..      14      64 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.2e-06
      AAA_23  8 rsfrdqeidFsk.gltlItGpNGaGKTTildAi 39
                  ++d++i   +  + +I+G+NGaGK+T++  +
  KIR61710.1 19 AALQDVSITVRRgEIHAICGENGAGKSTLMKVL 51
                5667788888552699*************9765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.5   0.00069      0.62      12     167 ..      21     197 ..      18     200 .. 0.59
   2 !    6.7   0.0    0.0099       8.9      19      88 ..     287     350 ..     276     417 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00069
      AAA_16  12 LlsalervrsgrpelvllsGesGvGKsslvrellralekd....ggiflrgkcdql....esa.............ipysalaqalareellrqllde. 88 
                 L+++  +vr+g  e+  + Ge G GKs+l++ l   +  +    g i++ g+ +++    +s+             +p + +               + 
  KIR61710.1  21 LQDVSITVRRG--EIHAICGENGAGKSTLMKVLSG-VYPSgsydGEIVFDGHPVHFrgirDSEahgiviihqelalVPHLSI---------------Ae 101
                 55555567766..788899***********88885.3333355544556666666633332222333333333222222222...............23 PP

      AAA_16  89 ..............aesaeleawrekleeala.avpelagaea.srllellkrllallsrderplvlvlDdlq..wadeaslqllaaLlrllesk.pl 167
                                + + ++a++++l+e+++   +++++ +a     ++l ++++ ls++ +  +l+lD+      d +s++ll++L rl++++  +
  KIR61710.1 102 niflgnerrgrsglIDWNRANADATALLESVGlRENAVTPIAAlGVGKQQLVEIAKALSKKVK--LLILDEPTaaLNDVDSAHLLDLLRRLRDQGiTC 197
                 344444444444445666666666666666668666666666678888888888877777566..888996554477888899999998888876555 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0099
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrell.ralekd..ggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 vr+g  e+v + G  G G + l+ +++ r++ +d  g +flrg+  +        ++a+a+  +++  + +d+
  KIR61710.1 287 VRAG--EVVGIAGLMGAGRTELAMSIFgRSYGRDisGRLFLRGRPIRA------RTVAEAI-GNGIAYATEDR 350
                 5555..78999************9999567777766666666666666......5688888.43666666655 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.9e-05     0.035      14      43 ..      21      51 ..      20      58 .. 0.89
   2 ?    0.6   0.0      0.42   3.8e+02     288     360 ..     136     199 ..      95     202 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.9e-05
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsileal 43
                l+dv+i +    +  ++G+N++GKS+++++l
  KIR61710.1 21 LQDVSITVRRGeIHAICGENGAGKSTLMKVL 51
                78888888887799***************98 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.42
      AAA_15 288 ddeelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQvi 360
                 ++  +p++  G G q+l+ ++   l+++         ++l+++EP a L      +l +ll++l +++ t ++
  KIR61710.1 136 ENAVTPIAALGVGKQQLVEIAK-ALSKKV--------KLLILDEPTAALNDVDSAHLLDLLRRLRDQGITCIM 199
                 6777788888888888776653.333344........48**********999999999999999888876555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.1e-05     0.055      95     121 ..      26      53 ..       7      60 .. 0.81
   2 ?   -1.9   0.0         3   2.7e+03      45      45 ..     161     161 ..     108     215 .. 0.61
   3 ?   -2.8   0.0       5.8   5.2e+03      90     119 ..     280     310 ..     265     319 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.1e-05
                  HHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  95 ellkd.ktsvlvGqSGvGKStLinallp 121
                    ++  ++ +++G+ G+GKStL+++l +
   KIR61710.1  26 ITVRRgEIHAICGENGAGKSTLMKVLSG 53 
                  44554499***************99975 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3
                  T CS
  RsgA_GTPase  45 k 45 
                  k
   KIR61710.1 161 K 161
                  1 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5.8
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinal 119
                  ++++   ++  +++ ++G  G+G++ L  ++
   KIR61710.1 280 VDDVGFTVRAgEVVGIAGLMGAGRTELAMSI 310
                  5566666665588889999999999887666 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.015        13      47      89 ..     146     188 ..     131     189 .. 0.79
   2 ?    4.7   0.1      0.04        36      16      42 ..     392     418 ..     379     443 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.015
     SbcCD_C  47 aaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 + +  +l++ a++ +++++l++LDE  + l +  +a ll+ll+
  KIR61710.1 146 GVGKQQLVEIAKALSKKVKLLILDEPTAALNDVDSAHLLDLLR 188
                 55555666666556899*********************99997 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.04
     SbcCD_C  16 vrdedgkekelsrssgtlSGGekqfla 42 
                 +rd + k  ++ + +g+lSGG +q+++
  KIR61710.1 392 RRDMNIKAPSVMATVGKLSGGNQQKVV 418
                 44555566668999*********9876 PP

>> CobA_CobO_BtuR  ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1    0.0004      0.36      84     154 ..     151     218 ..     140     230 .. 0.82
   2 ?   -0.5   0.0       1.5   1.3e+03      96     112 ..     426     442 ..     350     466 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0004
  CobA_CobO_BtuR  84 alekakealaseeydlvvlDEinyalklglldeeevlellk.kkpeklelvlTGrnapeelleaADlvtemk 154
                     +l ++++al s++++l++lDE ++al+   +d +++l+ll+  + + +  ++  ++   e++++AD +t ++
      KIR61710.1 151 QLVEIAKAL-SKKVKLLILDEPTAALN--DVDSAHLLDLLRrLRDQGITCIMISHKL-GEITAIADSITVLR 218
                     455666666.457********999985..69**********6699999999998876.68999999999876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.5
  CobA_CobO_BtuR  96 eydlvvlDEinyalklg 112
                     + d+++lDE +  +++g
      KIR61710.1 426 DPDVLILDEPTRGIDVG 442
                     57899999988776665 PP

>> RepB  RepB plasmid partitioning protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00013      0.12      64     166 ..     141     240 ..     120     252 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
        RepB  64 giaaiglakkigrarwvelaell.aaakavesayfrallsdtrfsqLvkilrpkkdkrvsaksaarpeaksarlqtavlaiiedegrqtLalkaaeayl 161
                 +iaa+g    +g +  ve+a++l +++k +  ++  a+l d   + L+++lr+ +d+++++   +   +++++   +++   + ++ ++L +++ e+++
  KIR61710.1 141 PIAALG----VGKQQLVEIAKALsKKVKLLILDEPTAALNDVDSAHLLDLLRRLRDQGITCIMISHKLGEITAIADSITVLRDGRTVERLDVRSGEVTQ 235
                 444444....677788*******9999***********************************************888888888888************* PP

        RepB 162 srLlf 166
                 +r+++
  KIR61710.1 236 DRIIR 240
                 **986 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0055       4.9       6      36 ..      23      53 ..      17     176 .. 0.90
   2 ?   -3.2   0.0       5.9   5.3e+03     108     148 ..     208     250 ..     182     255 .. 0.58
   3 ?    3.3   0.0     0.063        56       6      38 ..     282     314 ..     278     354 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0055
                 HHHS-EBTT-EEEEEESTTSSHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  6 DalfpivqGqrtlipgafgvGktvisqslsk 36
                 D+ +++ +G+  +i g++g Gk+++++ ls 
   KIR61710.1 23 DVSITVRRGEIHAICGENGAGKSTLMKVLSG 53
                 78899*********************98875 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.9
                  EEEEETHH..HHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHH CS
                  xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 108 lliadsls..rwaeAlreislrlgempadqgypaylgaklasl 148
                    iads++  r  + +  +  r ge+  d+   + +g +l s+
   KIR61710.1 208 TAIADSITvlRDGRTVERLDVRSGEVTQDRIIRGMVGRDLHSF 250
                  3444544422333444455555566666666666666666665 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.063
                  HHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   6 DalfpivqGqrtlipgafgvGktvisqslskqs 38 
                  D+ f++  G+ ++i g  g G+t+++ s+   s
   KIR61710.1 282 DVGFTVRAGEVVGIAGLMGAGRTELAMSIFGRS 314
                  6679999*******************9997665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0051       4.5      30      52 ..      28      50 ..      22      62 .. 0.87
   2 ?    0.7   0.1      0.38   3.4e+02     132     188 ..     154     202 ..     121     203 .. 0.73
   3 ?    1.1   0.0      0.28   2.5e+02      29      82 ..     286     350 ..     261     406 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0051
      AAA_25 30 lpagelallaGapgtGKttlald 52
                +++ge+++++G  g+GK+tl   
  KIR61710.1 28 VRRGEIHAICGENGAGKSTLMKV 50
                5799***************9755 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.38
      AAA_25 132 aleaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188
                 ++++a+ +  +v+l+++D  ++al+       d ++l++ l+r+ r  g++++++ H
  KIR61710.1 154 EIAKALSK--KVKLLILDEPTAALND-----VDSAHLLDLLRRL-RDQGITCIMISH 202
                 44444444..4999999998888864.....3345777777777.567777777777 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.28
      AAA_25  29 llpagelallaGapgtGKttlaldlalava....tGkpwlg.......pvapeqgkVlyvsaEds 82 
                  ++age++ +aG  g+G t la+++         +G+ +l         va   g+ + +++Ed+
  KIR61710.1 286 TVRAGEVVGIAGLMGAGRTELAMSIFGRSYgrdiSGRLFLRgrpirarTVAEAIGNGIAYATEDR 350
                 46799999999999999999999876555445554444444444443444445555555555555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.4     0.016        14       3      19 ..      36      52 ..      35      71 .. 0.84
   2 ?    0.6   0.0      0.88   7.9e+02      75      98 ..      62      85 ..      56      93 .. 0.79
   3 ?   -1.5   0.0         4   3.6e+03       8      22 ..     146     163 ..     144     195 .. 0.57
   4 ?    3.2   0.0      0.13   1.2e+02       1      16 [.     293     308 ..     293     380 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.016
      AAA_18  3 ltGtpGvGKttlakeLs 19
                ++G  G+GK+tl k Ls
  KIR61710.1 36 ICGENGAGKSTLMKVLS 52
                899***********996 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.88
      AAA_18 75 knlvidghlaeleseaakdikkvv 98
                + +v+dgh+++++  ++ +++++v
  KIR61710.1 62 GEIVFDGHPVHFRGIRDSEAHGIV 85
                578********9977777777655 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 4
      AAA_18   8 GvGKttl...akeLskrl 22 
                 GvGK +l   ak+Lsk+ 
  KIR61710.1 146 GVGKQQLveiAKALSKKV 163
                 788875511155556654 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.13
      AAA_18   1 IlltGtpGvGKttlak 16 
                 ++++G +G+G t+la 
  KIR61710.1 293 VGIAGLMGAGRTELAM 308
                 689**********985 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019      0.17      18      46 ..      25      51 ..      18      55 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
      AAA_27 18 sldfsaeeadlhliyGpNEAGKstalrAi 46
                s++    + ++h i G N AGKst+++ +
  KIR61710.1 25 SITV--RRGEIHAICGENGAGKSTLMKVL 51
                4444..47899**************9876 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.031        27      19      39 ..      31      51 ..       9      56 .. 0.78
   2 ?   -1.3   0.0       2.3     2e+03      21      42 ..     138     158 ..     120     172 .. 0.69
   3 ?    4.0   0.0     0.052        46      14      39 ..     287     310 ..     274     318 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.031
                TEEEEEEESTTSSHHHHHHHH CS
        TsaE 19 gdvilLeGdLGaGKTtlvrgl 39
                g++ ++ G+ GaGK+tl++ l
  KIR61710.1 31 GEIHAICGENGAGKSTLMKVL 51
                6678899***********976 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.3
                 EEEEEESTTSSHHHHHHHHHHH CS
        TsaE  21 vilLeGdLGaGKTtlvrglaka 42 
                 +++    LG+GK +lv  +aka
  KIR61710.1 138 AVTPIAALGVGKQQLVE-IAKA 158
                 45666789999999985.4444 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.052
                 HHHCHTEEEEEEESTTSSHHHHHHHH CS
        TsaE  14 lakalgdvilLeGdLGaGKTtlvrgl 39 
                 + +  g+v+ + G +GaG T l+ ++
  KIR61710.1 287 VRA--GEVVGIAGLMGAGRTELAMSI 310
                 333..78999***********98776 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00031      0.28      52      86 ..      27      60 ..       9      65 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00031
                SBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEE CS
         MCM 52 tklrgdinvllvgdpgtaKsqlLkyveklapravy 86
                t  rg+i+  ++g+ g +Ks+l+k ++ + p + y
  KIR61710.1 27 TVRRGEIHA-ICGENGAGKSTLMKVLSGVYPSGSY 60
                33699**96.79***************99999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.49
# Mc/sec: 3121.39
//
Query:       KIR61711.1  [L=380]
Description: sugar ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.3e-63  212.4   9.1    1.1e-62  211.9   9.1    1.1  1  Peripla_BP_4  Periplasmic binding protein domain
      1e-06   28.4   0.3    4.3e-06   26.4   0.2    2.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
  ------ inclusion threshold ------
       0.11   12.7   0.1       0.75   10.0   0.1    2.4  3  UPF0180       Uncharacterised protein family (UPF0180)


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.9   9.1   1.8e-66   1.1e-62       1     257 [.      42     326 ..      42     327 .. 0.92

  Alignments for each domain:
  == domain 1  score: 211.9 bits;  conditional E-value: 1.8e-66
                   EEEEES-SSTC.HHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-C CS
  Peripla_BP_4   1 igvvvkdksnp.ffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsger 96 
                   igv++++++++ ++  +++ ++e ++++g++v++ ++a+ d+ +Q +qi+++i++g+d++i+a++d+tal+ +l++a++a+IpV+++d+++  s ++
    KIR61711.1  42 IGVSMPTQTSErWIA-DGNSVKEKLQAKGYKVDL-QYAGDDIPTQSQQIDQMITQGADVLIIAAIDGTALTGQLQAAAQAKIPVISYDRLILGSPNV 136
                   89*********8888.*****************9.7************************************************************* PP

                   EEEEEC-HHHHHHHHHHHHHHHCTTH............EEEEEETSCCCHHHHHHHHHHHHHHHHH...-TTCEECC......EEESTTTCHHHHHH CS
  Peripla_BP_4  97 layvgfdneaaGelqaeylaeklggk...........kgkvvilaGspgdpnaeeriegfrkvlke...ypgikiva......evaganwdaekaqq 173
                   + yv+fdn+++G +qa +l+  lg +           + ++ ++aGs++d+n+++++ g++++lk+    + +k+ +      ++a+  w++  aq+
    KIR61711.1 137 DFYVSFDNYKVGVAQATALLVGLGLQnkdgskgtatgPFTIELFAGSLDDNNTQYFFGGAMDTLKPffdNGTLKVKSgqtkieQAATLRWQQGVAQT 233
                   ****************999888888888999999*9*******************************9633777777777774555888******** PP

                   HHHHHHH...TTT...ECEEEESSCCHHHCHHHHHHHTTT.TSTEE...EEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT- CS
  Peripla_BP_4 174 aleallt...anp...ldgilaandgmaegalealeaagl.agkvv...vtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkGk 257
                   ++e+llt   + +   +dg+l++ dg+ +g+++al++ag+ +gk++   vtgqDa+ +++++i dG +++tv++d++ l+++a+ +a a l+ k
    KIR61711.1 234 RMEDLLTssyN-DgstVDGVLSPYDGISRGIITALQNAGYgSGKKKlpvVTGQDAEIASIKLINDGVQSSTVFKDTRLLAEQAAIAAEAFLQEK 326
                   *******9654.2579************************966655688**********************************99998887765 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.2   7.2e-10   4.3e-06      18     120 ..      56     163 ..      39     317 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 7.2e-10
                   HHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GG..HHHHHHHHHHT-EEEEESS--B-TTTS-EEE.E-HHHHHH.HH CS
  Peripla_BP_1  18 dlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdts..fdditakaesgipvialedaidapdgvPcvi.pddtqage.es 109
                      + +++ +++ g++v l  ag++  ++ ++id++ ++g+d liia  d+     +++a a++ ipvi  ++ i     v+ ++ +d++++g  ++
    KIR61711.1  56 ADGNSVKEKLQAKGYKVDLQYAGDDIPTQsQQIDQMITQGADVLIIAAIDGTalTGQLQAAAQAKIPVISYDRLILGSPNVDFYVsFDNYKVGVaQA 152
                   445678889999999999988888777777*****************99988677899999999**********98777999865389*****9899 PP

                   HHHHHHHHHHH CS
  Peripla_BP_1 110 tqkLiaeghkr 120
                   t  L+  g ++
    KIR61711.1 153 TALLVGLGLQN 163
                   99898887665 PP

>> UPF0180  Uncharacterised protein family (UPF0180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00013      0.75      11      49 ..      60     102 ..      58     126 .. 0.77
   2 ?   -2.0   0.0      0.68   4.1e+03      39      52 ..     281     294 ..     274     300 .. 0.77
   3 ?   -2.6   0.0       1.1   6.7e+03      11      22 ..     357     368 ..     356     373 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00013
     UPF0180  11 nvkeaLrekGYeVvdlet.....eedaqsvdaiVvtGqdtnvmg 49 
                  vke L++kGY+V  l+       ++ q++d ++++G+d  +++
  KIR61711.1  60 SVKEKLQAKGYKVD-LQYagddiPTQSQQIDQMITQGADVLIIA 102
                 69**********95.444478888889**********8877644 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.68
     UPF0180  39 VvtGqdtnvmgied 52 
                 VvtGqd ++  i+ 
  KIR61711.1 281 VVTGQDAEIASIKL 294
                 99999999887765 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.1
     UPF0180  11 nvkeaLrekGYe 22 
                 ++k+ L ++GY 
  KIR61711.1 357 DIKSVLVDSGYW 368
                 789999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2425.15
//
Query:       KIR61712.1  [L=342]
Description: hypothetical protein TK50_29690 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-35  120.2   0.0    1.1e-34  119.8   0.0    1.2  1  Beta-lactamase2  Beta-lactamase enzyme family
    9.8e-05   21.7   1.1    9.8e-05   21.7   1.1    1.8  2  Beta-lactamase   Beta-lactamase
    0.00076   19.0   0.0     0.0011   18.4   0.0    1.1  1  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase
  ------ inclusion threshold ------
          6    7.8  10.0         14    6.6   6.5    3.1  2  TPR_4            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.8   0.0   2.6e-38   1.1e-34      10     197 ..      85     281 ..      74     286 .. 0.92

  Alignments for each domain:
  == domain 1  score: 119.8 bits;  conditional E-value: 2.6e-38
                      STTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEEGGHHHHTSSSTSGGGST..TSEEEHHHHHHHHHHTT-HHHHHHHHHHHTHHHHHHHHH CS
  Beta-lactamase2  10 nadeefpaaStiKvpillalleavlegklslderltltaedivggsgilqklp..gktlslrdlltlmiavSDNtAtnlLidrlgleavnawlk 101
                      +ad++++  S+ K+ +++a+++++++g+l+ld+rl lta+ i ggsgi   ++  g+++++   lt+m+ vSDNtA +++ +++   ++n++l+
       KIR61712.1  85 DADRVTHGYSVQKLAVAVAVMDKIDRGQLQLDQRLDLTADIILGGSGIYFLQTvwGDQVTVANFLTAMLLVSDNTAVRMCGRVVPALEINDILA 178
                      789999999**************************************9986667889************************************* PP

                      HCTHTTSB--SHTTCCHHHTTSSTTEE-HHHHHHHHHHHHHTTSSHHH...HHHHHHH.T-STTTTTTTTTT..TTSEEEEEEEE....ETTEE CS
  Beta-lactamase2 102 elglretrlrrklpdleaadkdkrntttardlarllealargellspe...elleils.nqqfrdrlaaglp..egvrvahKtGe....ldgvr 185
                      ++g+++tr++    +++   + + ++tt+r+ ++ll +la+ +++sp+    ll il+  + + d++++ ++  e  rva K G     l+++r
       KIR61712.1 179 AKGFTHTRVEPVA-NPN---RFYLGVTTPRETHDLLWRLANKTIVSPRsadFLLGILRwINGYHDGIRHTMSsaERSRVATKYGAdyddLGAAR 268
                      *********9654.444...479*************************9999999***889999********9************99999**** PP

                      EEEEEEEE.TTEE CS
  Beta-lactamase2 186 hdvGivya.dgrp 197
                      h++Gi +  +g p
       KIR61712.1 269 HEAGIMFDpAGAP 281
                      *****99977766 PP

>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   1.1   2.2e-08   9.8e-05      45     107 ..      85     156 ..      15     180 .. 0.85
   2 ?   -2.3   0.0      0.44     2e+03     244     279 ..     245     280 ..     229     290 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.2e-08
                     STTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBG................GGTSTTCTTGGGTTEBHHHHHTTHSSCS CS
  Beta-lactamase  45 tadtlfriaSvtKtftaaavlqlveeGkldLddpV................skylPefagpgkgkiTlrdLltHtsGlp 107
                     +ad +   +Sv K+ +a+av++ +++G+l+Ld+++                +         +++++T+++ lt+   ++
      KIR61712.1  85 DADRVTHGYSVQKLAVAVAVMDKIDRGQLQLDQRLdltadiilggsgiyflQTV-------WGDQVTVANFLTAMLLVS 156
                     67889999***************************8887777777665555555.......5666********976555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.44
                     HHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECC CS
  Beta-lactamase 244 aetlaqltaklssgttrpagiraglglGwvladktg 279
                       + ++ + ++++g++ +++++a++  G +  + + 
      KIR61712.1 245 MSSAERSRVATKYGADYDDLGAARHEAGIMFDPAGA 280
                     455566677889999999999999999999887665 PP

>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.5e-07    0.0011      27     108 ..      81     160 ..      62     165 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.5e-07
                    EEEESTTS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEEE--GGGHGCCSGTTSSTTS-TTT-EEEHHHHHHHHHCC--HHH CS
  Peptidase_S11  27 LyeknadevveiASltKlmTaylvlealkkgklkeddkvtisedayalgnnkevsniflkkgskvsvkdLlegllvssgNdA 108
                    + + +ad v +  S+ Kl  a+ v++ +++g+l++d+ ++  +d    g  ++++ +    g++v+v+++l ++l+ s+N A
     KIR61712.1  81 VVADDADRVTHGYSVQKLAVAVAVMDKIDRGQLQLDQRLDLTADIILGG--SGIYFLQTVWGDQVTVANFLTAMLLVSDNTA 160
                    567899999999********************************99988..6888877778*******************98 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   6.5    0.0031        14       4      23 ..      13      32 ..      10      33 .. 0.87
   2 ?    0.5   0.1      0.31   1.4e+03       2      11 ..     306     315 ..     303     318 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0031
       TPR_4  4 llaLArallalGdldeAral 23
                l a A al+a+G++++A+  
  KIR61712.1 13 LGAAAAALAATGRPAAAESR 32
                6689*************975 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.31
       TPR_4   2 rallaLAral 11 
                 ra+++L+r++
  KIR61712.1 306 RAHAVLGRTM 315
                 6788888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2348.20
//
Query:       KIR61713.1  [L=65]
Description: hypothetical protein TK50_29700 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       108  (0.00602376); expected 358.6 (0.02)
Passed bias filter:                       69  (0.00384851); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 463.03
//
Query:       KIR61714.1  [L=184]
Description: deaminase/reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-23   83.7   0.0    1.8e-23   83.4   0.0    1.1  1  RibD_C    RibD C-terminal domain


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.0   9.9e-28   1.8e-23       1     199 [.       2     174 ..       2     175 .. 0.88

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 9.9e-28
                 -EEEEEEEEETTSBSSCTTSSGCTSS-HHHHHHHHHHHHTSSEEEEEH...HHHHHHT--SS--SSCHSCHH.HTT.G..SS-EEEEEETTS-S-T..T CS
      RibD_C   1 pyvilklavSlDGklaaaggeskwitgeearadvhelraeadailvGr...gtvladnpsltvrwvkkreae.adaea..rqpvrvVvdstlrvpl..d 91 
                 +++i  + v+lDG+++ + +++    ++ea a++++ +  ada+l+Gr   + ++  +p        ++e + + + a  ++++++V+++tl++p   d
  KIR61714.1   2 RKLINSTYVTLDGVIENPMWTMP-YFDDEASAFAGAQTDAADAVLMGRvtyDGMSVAWP-------AQDESDpTPGAAyfNNVRKYVASTTLTDPAwnD 92 
                 57888999***************.999*********************88888888888.......22233333344455*************885225 PP

                 SHHHHSSS-EEEEESSCSCHHHHHHCCESE-HHHHHHHHHHTT--EEEEEETHHHHHHHHHTTT-SEEEEEEESCE--TTSBCSSSSST-SSEEEEEEE CS
      RibD_C  92 akvltddaptlvatteeadkekveklkvrvdlkelleeLkergirsllveGGatLagsllraglvDelrlyiaPkllGgagktlfdgegfkalklklvk 190
                 ++vl++d                        l++++++Lk++++r+++  G +++ ++l++aglvDe+r+ i+P+l Gg + + ++  +f+   ++l  
  KIR61714.1  93 TRVLRGD------------------------LVAEVRKLKAQEGRDIIQYGFGSVTAQLVAAGLVDEVRFWIHPVLTGG-ASMTTPLADFT-ASFELID 165
                 6699999........................************************************************.**********9.5999999 PP

                 EEEETTEEE CS
      RibD_C 191 sealgegvv 199
                 ++++ +gvv
  KIR61714.1 166 TRVMKSGVV 174
                 999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1321.02
//
Query:       KIR61715.1  [L=529]
Description: xylulose kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-35  123.0   0.0      8e-35  120.6   0.0    2.0  1  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom
    2.9e-27   95.7   0.0    5.3e-27   94.8   0.0    1.4  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
  ------ inclusion threshold ------
      0.087   12.6   0.0       0.28   11.0   0.0    1.7  2  BSP       Peptidase of plants and bacteria


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6   0.0   1.3e-38     8e-35       2     245 .]       8     265 ..       7     265 .. 0.87

  Alignments for each domain:
  == domain 1  score: 120.6 bits;  conditional E-value: 1.3e-38
                 EEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEESSEEE-TT- CS
      FGGY_N   2 ilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpLynailwkd 100
                 +l++D+Gt+++ka+++ ++g+v + a+++++l     g aeqdp+++w+al ++++ +++++      +  +  s+q+eg++++D  ++pL+ +i+w d
  KIR61715.1   8 VLAIDLGTSGMKAALVAADGTVTGWAERAVPLRVLPGGGAEQDPRAWWDALGQVVADLGRAHPDHLRAVTVVCASTQGEGTIAVDAAGEPLTACISWLD 106
                 799********************************99*************************666667777888************************* PP

                 -TTHHHHHHHHH.........TTCHCCHHHHHSS-SSTT..SHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--EEEHHHHCTTTSEETT...T CS
      FGGY_N 101 rrtaeiveklke.........egnekklyektglvlstg..ftlsklkWlkenepevfekiekflliddyLiwrLtgqfvtdvtnasesmlfnik...k 185
                  r a+  ++              +  ++   tg + s+    ++  +  ++++ p+v+++++ fl + d+++ +Ltg  v  v  + +s +++ +   +
  KIR61715.1 107 MRGAANLRRQFGgfpayhgmsVRRIARWLRLTGGMPSPTgkDPAAHMLLVRDEMPQVYARTASFLNVLDWINLKLTGRTVATVDSILTSWVTDNRrpgD 205
                 **99887664322321221112234455566766666542369999*******************************9999999999999999762225 PP

                 TEE-HHHHHHTT--GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 186 lewdeellailgipeelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                   +++ l+a +gi++++LP++v  + +ig+l p +aa lGl e v vv+g+ D+ aaa+G
  KIR61715.1 206 VRYSPALVADCGIDRDKLPPIVACTDVIGTLSPAAAAHLGLPESVRVVAGAIDNTAAAIG 265
                 79********************************************************98 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   0.0   8.9e-31   5.3e-27       5     195 ..     278     475 ..     275     478 .. 0.82

  Alignments for each domain:
  == domain 1  score: 94.8 bits;  conditional E-value: 8.9e-31
      FGGY_C   5 lGTssflllvgtkpvisehglltpva.gedgkpeyalegsiavagslvawlldnl........glreeirdageveeslaelaaaeavadaggvvfvpa 94 
                 lGTss + +  + ++  ++++++    +   ++ y++ +++a ag+ + wl+d+         g+    rd+g +  ++ +       + a+gv++ p+
  KIR61715.1 278 LGTSSWVAAHVPAKK--TDVVAGIASvPCAIPDRYLMTALQATAGANLTWLRDKVveyddpllGAGHVSRDEGTI-FDAFDRIIPTVPPGANGVIYTPW 373
                 899999999555555..344444333224589**********************997777776554444444444.334435556888889******** PP

      FGGY_C  95 fsglrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpkt.aeatalGaAi 192
                 + g+rap  dp++r++++++s +t+ +++ rA++e+va+ +r+  +a ++  g+p+++la++GGg+ +d ++q++Ad+lgv ++r ++  +  a Ga  
  KIR61715.1 374 LYGERAPVDDPHLRAAFLNISLDTNRSDLLRAVFEGVAFNTRWLFRAVDRFLGAPVTSLAITGGGALSDSWCQIFADVLGVEIRRDANpLAVNARGAGW 472
                 **************************************************9********************************9977766667777655 PP

      FGGY_C 193 lAa 195
                 ++a
  KIR61715.1 473 IGA 475
                 555 PP

>> BSP  Peptidase of plants and bacteria
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.6e-05      0.28     114     166 ..     119     175 ..     115     200 .. 0.79
   2 ?   -2.2   0.0       0.5     3e+03      37      83 ..     232     281 ..     228     299 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.6e-05
         BSP 114 aegrapggliEGiAdyvRlkaglepahwkrpasg....adkwdqgyqvtayFLeyle 166
                 + ++ +g  +  iA ++Rl  g+  +  k pa      +d+  q y  ta+FL+ l+
  KIR61715.1 119 GFPAYHGMSVRRIARWLRLTGGMPSPTGKDPAAHmllvRDEMPQVYARTASFLNVLD 175
                 566667777888********************999**999999*********86433 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.5
         BSP  37 vlklLykspserippvrsVtlllrdidgvaytsG...ldddhkeIhlsls 83 
                 v+ +L   ++ ++   +sV ++   id +a++ G     d++  ++l +s
  KIR61715.1 232 VIGTLSPAAAAHLGLPESVRVVAGAIDNTAAAIGagtTGDNEPHLYLGTS 281
                 55555555555555567899999999999988886544455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3413.01
//
Query:       KIR61716.1  [L=761]
Description: aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-49  168.8   0.0    3.5e-49  167.6   0.0    1.6  1  Aminotran_3  Aminotransferase class-III
    1.9e-44  151.9   0.1    4.6e-44  150.6   0.0    1.7  2  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6   0.0   3.9e-53   3.5e-49       8     351 ..     352     687 ..     348     754 .. 0.85

  Alignments for each domain:
  == domain 1  score: 167.6 bits;  conditional E-value: 3.9e-53
                  -SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHH CS
  Aminotran_3   8 nlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlK 105
                  +++l+i++aeG+ l+d dg++y+D++++  +++lG +   v++ v+e++ ++    +  l++e  lklae++ + +p+ +++     sG+eAv++A++
   KIR61716.1 352 PFPLAIERAEGAHLVDRDGNTYIDFLQAGGPTILGSNYGPVNERVAEVVRAS--GPVTGLFHEYELKLAEIIHRYLPH-VEMYRSLGSGTEAVMAAVR 446
                  67799*********************************************99..5556999*****************.******************* PP

                  HHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCET CS
  Aminotran_3 106 larkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiqg 203
                   ar+       t k+ +i++ ga+HG   + +   +    y+ + + +    ++ + +  ++  + ++  +   + +e   ++    +aAv+vEp+  
   KIR61716.1 447 GARA------FTGKKMVIKVGGAYHGWSDTMVYGLRVPGTYRMNAKGI----PFGATSR-TREAFPHDLGQLRRKLIE---NRLRGGTAAVVVEPVGP 530
                  ****......****************8877665555534444444443....3333332.222233333344444444...688999*********** PP

                  TTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTT..TTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EE.EEEEHHHHTTS-TTS.........B-- CS
  Aminotran_3 204 egGvvvaspeflaklrelckkhdvllivDEvqtGf..GrTGklfAlehagvspDlmtlaKaltgGlplsa.vlataevmqalapgs.........hgs 289
                  e G  +++ +f+ak+r+lc++ ++lli+DEv tGf  G  G   A+ ++gv+pDl++l+Ka++gG+p++  v ++a+vm ++ +g           g+
   KIR61716.1 531 ESGTRPVPRDFNAKVRQLCDEFGALLIFDEVVTGFrlGLGG---AAGYFGVTPDLTVLGKAVSGGYPMAGgVGGRADVMAVFGSGLdgksgahiqVGG 625
                  ***********************************777777...9**********************9853889********7766999***9999** PP

                  TTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEE CS
  Aminotran_3 290 TfgGnplacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaie 351
                  T ++npl ca+   ++e +++ +    a ++g++l+ gL++l ++y       ++G ++ +e
   KIR61716.1 626 TLSANPLSCAAGYFAIEEMARTNAPVIAGRAGDRLTRGLQRLIDRYGLPYVAYNQGSIVHLE 687
                  *******************************************9995544444556666555 PP

>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6   0.0   5.1e-48   4.6e-44       2     181 ..       9     185 ..       8     190 .. 0.92
   2 ?   -3.0   0.0      0.64   5.8e+03     124     163 ..     714     727 ..     677     744 .. 0.45

  Alignments for each domain:
  == domain 1  score: 150.6 bits;  conditional E-value: 5.1e-48
                  HHHHHHHHHHHTTSSCTTBCEEEEEETSTTEEEEEBTSS-GGGHTGGGEEEEETTSCEEEEC.ECSSSTB-TTHHHHHHHHHH-TT-SEEEEE--HHH CS
  Aldolase_II   2 elaeasrllarrglvegtgGniSvrvpeedsflitpsgvdfeeltaedlvvvdldsgevveg.kekggkpssetplHlaiykarpdaravvHtHspaa 98 
                  ++++++r + +rg+ ++t Gn+Svrvp+++ + +tps+ d+++++ ed+++vd+  g++v + +  g++ps+e  +H+ iy++rpd++a+vHtH p+a
   KIR61716.1   9 HVVDMCRTMLARGYLKATEGNVSVRVPGHELYAVTPSNYDYDRMRVEDVCIVDFA-GKHVPDdSGTGLAPSIECGMHANIYRQRPDVNAIVHTHQPYA 105
                  7899**********************9666777*********************9.7666334777999***************************** PP

                  HHHHTCCSTSCHCCSSHHHHC.HSSSEEEEES-SSTTCHHHHHHHHHHHHHS-SEEEETTTEEEEEESSHHHHHHHHHHHHHH CS
  Aldolase_II  99 valsalagkeglppltqeaaklllgdevpvipyaapgteelgealaealkedakavllrnHGlltvGetleeAvalaetleea 181
                   al++l  ++++p+lt e  + +lg++v++++ya+ gt  l++++++++++  +a +++nHG+++ G++ + Av+++  le++
   KIR61716.1 106 SALAFL--RRPIPALTDEQVR-FLGKRVAIVDYAPSGTGFLARNVQKKVAGGDNAFIIANHGIVALGTDPDRAVFNMALLEKV 185
                  ****88..89**********9.67999***********************5559***************************97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.64
                  SEEEEES-SSTTCHHHHHHHHHHHHHS-SEEEETTTEEEE CS
  Aldolase_II 124 devpvipyaapgteelgealaealkedakavllrnHGllt 163
                  ++                           ++  + HG++t
   KIR61716.1 714 EQ--------------------------MGAAYAAHGIIT 727
                  22..........................223333344443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 4994.19
//
Query:       KIR61717.1  [L=388]
Description: hypothetical protein TK50_29725 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-18   65.4   1.8      3e-18   65.4   1.8    2.0  2  HTH_30        PucR C-terminal helix-turn-helix domain
    4.4e-05   23.3   0.0    0.00015   21.7   0.0    1.9  1  HTH_1         Bacterial regulatory helix-turn-helix protein, 
  ------ inclusion threshold ------
      0.014   15.5   0.2      0.014   15.5   0.2    3.0  3  HTH_28        Helix-turn-helix domain
       0.04   13.5   0.3      0.092   12.3   0.0    1.8  2  HTH_24        Winged helix-turn-helix DNA-binding
       0.13   12.1   0.2       0.13   12.1   0.2    4.0  3  MarR_2        MarR family
       0.16   11.7   1.0        5.6    6.7   0.1    3.2  3  Sigma70_r4_2  Sigma-70, region 4


Domain annotation for each model (and alignments):
>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       2.3     7e+03      15      24 ..     103     112 ..     101     115 .. 0.76
   2 !   65.4   1.8   9.9e-22     3e-18       1      58 [.     325     382 ..     325     383 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.3
                 HHHHHHHHTS CS
      HTH_30  15 isatAkaLhv 24 
                 +++tA++L +
  KIR61717.1 103 AQRTAARLML 112
                 5789998865 PP

  == domain 2  score: 65.4 bits;  conditional E-value: 9.9e-22
                 ...HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHH CS
      HTH_30   1 LleTLraylenggnisatAkaLhvHrnTlryRLrrieellgldlddpddrlaLylAlr 58 
                 Ll+TL+ +l++ g+++++A +L+vH++T++yR+rr++el g dl+dp +r++L l l+
  KIR61717.1 325 LLATLHSWLRHWGSRAEVATELYVHPQTVSYRIRRLRELYGDDLTDPTARTELLLVLA 382
                 89*****************************************************997 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.9e-08   0.00015      14      52 ..     337     375 ..     325     387 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 4.9e-08
                 SSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSE CS
       HTH_1  14 gsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrg 52 
                 gs ++ A eL++ + +vs +i+rL+e+ g++L + t r 
  KIR61717.1 337 GSRAEVATELYVHPQTVSYRIRRLRELYGDDLTDPTART 375
                 688999***************************987774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.26   7.6e+02       1      21 [.     166     188 ..     157     197 .. 0.68
   2 ?   -2.4   0.1       1.8   5.4e+03      50      51 ..     227     228 ..     214     248 .. 0.57
   3 ?   15.5   0.2   4.6e-06     0.014      10      46 ..     333     370 ..     327     374 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.26
      HTH_28   1 qRleiikllaaGh..svreaAre 21 
                 +R++  +ll++G+  +++  A++
  KIR61717.1 166 RRRQLAELLLRGDglPAAVGAAA 188
                 57788888888874544333333 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
      HTH_28  50 rp 51 
                 r+
  KIR61717.1 227 RD 228
                 43 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 4.6e-06
      HTH_28  10 aaGh.svreaArelgisrrtvyrWikryee.gGiagLvp 46 
                 +++  s++e+A el ++++tv+  i+r++e +G+ +L +
  KIR61717.1 333 LRHWgSRAEVATELYVHPQTVSYRIRRLRElYGD-DLTD 370
                 67777****************9999999999995.5554 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.8   8.2e+03      11      27 ..     232     248 ..     231     248 .. 0.81
   2 ?   12.3   0.0   3.1e-05     0.092      20      43 ..     339     362 ..     338     363 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.8
      HTH_24  11 lLqknprisqreLAerl 27 
                 lL++ pr    +LAe+l
  KIR61717.1 232 LLRAGPRSARPQLAEAL 248
                 57788999999999986 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.1e-05
      HTH_24  20 qreLAerlglSpstvnrrlkrLee 43 
                  +e+A +l + p+tv++r++rL e
  KIR61717.1 339 RAEVATELYVHPQTVSYRIRRLRE 362
                 689*******************87 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.2      0.41   1.2e+03       3      21 ..      75     104 ..      73     167 .. 0.56
   2 ?   -0.6   0.2      0.42   1.2e+03      11      32 ..     170     192 ..     164     195 .. 0.64
   3 ?   12.1   0.2   4.5e-05      0.13      23      47 ..     338     362 ..     293     363 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.41
                 --HHHHHHHHHHHCTTTS...........E CS
      MarR_2   3 ltpaqarvLaaLgrrpgr...........d 21 
                 l+p  ++v  aLg+++ r            
  KIR61717.1  75 LPPRVRDVFVALGAGEARedrgpeallaaQ 104
                 566667777777776666555555432220 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.42
                 HHH.HHCTTTSEEEHHHHHHHHT CS
      MarR_2  11 Laa.Lgrrpgrdltvgelarrlg 32 
                 La+ L r++g + +vg+ a+r g
  KIR61717.1 170 LAElLLRGDGLPAAVGAAAARIG 192
                 55515555552559999999987 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 4.5e-05
                 EHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2  23 tvgelarrlglsksavsrilkrLva 47 
                 + +e+a +l + +++vs++++rL +
  KIR61717.1 338 SRAEVATELYVHPQTVSYRIRRLRE 362
                 6689******************976 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.099   2.9e+02      10      20 ..      74      84 ..      70      86 .. 0.90
   2 ?   -1.2   0.0      0.54   1.6e+03       8      20 ..     314     326 ..     314     332 .. 0.88
   3 ?    6.7   0.1    0.0019       5.6      28      51 ..     338     361 ..     337     363 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.099
                  TS-HHHHHHHH CS
  Sigma70_r4_2 10 eLperqreifl 20
                  +Lp+r r +f+
    KIR61717.1 74 ALPPRVRDVFV 84
                  6********97 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.54
                   HTTS-HHHHHHHH CS
  Sigma70_r4_2   8 laeLperqreifl 20 
                   la+L + qre +l
    KIR61717.1 314 LAHLRPAQRESLL 326
                   799******9887 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0019
                   -HHHHHHHHT--HHHHHHHHHHHH CS
  Sigma70_r4_2  28 sykEIAellgisegtVksrlsRAr 51 
                   s +E+A +l ++++tV +r++R r
    KIR61717.1 338 SRAEVATELYVHPQTVSYRIRRLR 361
                   669*******************77 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 2358.70
//
Query:       KIR61718.1  [L=201]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-21   75.2   3.2    5.7e-21   75.2   3.2    2.0  2  TetR_C_33  Tetracyclin repressor-like, C-terminal domain
    1.4e-07   31.2   1.4    2.3e-07   30.5   0.1    2.1  2  TetR_N     Bacterial regulatory proteins, tetR family
    0.00086   19.4   1.1       0.11   12.6   0.0    3.4  2  HTH_28     Helix-turn-helix domain
  ------ inclusion threshold ------
      0.077   12.8   0.0       0.24   11.2   0.0    1.8  1  HTH_10     HTH DNA binding domain
      0.091   12.8   0.1       0.17   12.0   0.1    1.4  1  HTH_22     HTH domain
       0.18   11.9   0.0       0.38   10.9   0.0    1.5  1  HTH_7      Helix-turn-helix domain of resolvase


Domain annotation for each model (and alignments):
>> TetR_C_33  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.5      0.46   1.4e+03      69      93 ..      29      53 ..       3      76 .. 0.52
   2 !   75.2   3.2   1.9e-24   5.7e-21       1     104 []      82     179 ..      82     179 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.46
                HHHHHHHHHHHHHHHCTTTTSSS-H CS
   TetR_C_33 69 ralwaalhGlvsLelfghfglpadp 93
                + + a+ +G+    l  h++  +d+
  KIR61718.1 29 VSAVARRFGVTVASLYSHLRNSQDL 53
                3333444444444444444322222 PP

  == domain 2  score: 75.2 bits;  conditional E-value: 1.9e-24
                 HHHHHHHHHHHHHH-HHHHHHCCSS--TT-S-HG.HHCCCCHHHHHHHHHHHGGG---TH--CCHHHHHHHHHHHHHHHHHHHHCTTTTS.SS-HHHHH CS
   TetR_C_33   1 lralarayrrfAlahpaeYallfgspvpgyaapd.elaaagarvlalllaalaalvaaglppadavaaaralwaalhGlvsLelfghfgl.padpdalf 97 
                 l+ala+ yr++A++hp++Ya+++    +   +p+ ++a ag r  ++++ +l+++   +l+++d+++a+r+l +++hG+vsLel g+f++ ++d+++++
  KIR61718.1  82 LTALANVYRDYAREHPGRYAAAQ---LR--LDPAtAAASAGVRHARMVRSVLRGY---DLTEPDQTHAVRLLGSVFHGYVSLELGGGFDHsAPDTQETW 172
                 689********************...33..566449*******************...999999************************887******** PP

                 HHHHHHH CS
   TetR_C_33  98 erlvdal 104
                  r +dal
  KIR61718.1 173 TRILDAL 179
                 ****987 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.1   7.8e-11   2.3e-07       4      42 ..      14      52 ..      11      57 .. 0.89
   2 ?   -2.1   0.2       1.2   3.4e+03       4      11 ..      69      76 ..      61      84 .. 0.55

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 7.8e-11
                HHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHH CS
      TetR_N  4 aArelfaerGydattvreIAkrAGvskgalYryFpsKee 42
                a++el  e G++++tv+++A+r Gv+ ++lY + ++ ++
  KIR61718.1 14 AGAELADEVGFEQVTVSAVARRFGVTVASLYSHLRNSQD 52
                899*****************************9766555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                HHHHHHHH CS
      TetR_N  4 aArelfae 11
                aA +l ++
  KIR61718.1 69 AADALAGR 76
                44455555 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   3.7e-05      0.11      11      34 ..      25      48 ..      16      49 .. 0.89
   2 ?    3.1   0.4     0.036   1.1e+02       9      28 ..      92     111 ..      86     135 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.7e-05
      HTH_28 11 aGhsvreaArelgisrrtvyrWik 34
                ++++v+++Ar++g++  ++y+ ++
  KIR61718.1 25 EQVTVSAVARRFGVTVASLYSHLR 48
                478*****************9987 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.036
      HTH_28   9 laaGhsvreaArelgisrrt 28 
                 +a+ h+ r aA++l +++ t
  KIR61718.1  92 YAREHPGRYAAAQLRLDPAT 111
                 77777666666666666655 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     8e-05      0.24      23      48 ..      26      51 ..      25      52 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8e-05
      HTH_10 23 rvtlkeLAkelGIskstlsehLrkae 48
                +vt++++A ++G++ ++l+ hLr+++
  KIR61718.1 26 QVTVSAVARRFGVTVASLYSHLRNSQ 51
                6899*******************987 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   5.8e-05      0.17      43      63 .]      28      48 ..      26      48 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.8e-05
      HTH_22 43 avekvAekLgiSraTvYryLr 63
                +v+ vA+++g++ a++Y++Lr
  KIR61718.1 28 TVSAVARRFGVTVASLYSHLR 48
                6999***************97 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00013      0.38      23      39 ..      28      44 ..      25      49 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00013
                -STTTSSSS---SSSS- CS
       HTH_7 23 siskIAkevnisRsTvY 39
                ++s++A++++++++++Y
  KIR61718.1 28 TVSAVARRFGVTVASLY 44
                799*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1392.22
//
Query:       KIR61719.1  [L=163]
Description: FBP domain-containing protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-59  197.6   0.0    9.1e-59  197.4   0.0    1.0  1  FBP_C     FBP C-terminal treble-clef zinc-finger


Domain annotation for each model (and alignments):
>> FBP_C  FBP C-terminal treble-clef zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.4   0.0   5.1e-63   9.1e-59       1     155 []       8     161 ..       8     161 .. 0.98

  Alignments for each domain:
  == domain 1  score: 197.4 bits;  conditional E-value: 5.1e-63
       FBP_C   1 eirasfvnaskgeakrltlPrdldelpwddldflgWrDpkaperaylvvelddelvGvaLraaeaakagarrrsmCslCetvhassevsLftarragaa 99 
                 +ira+fvn++kge krl++Prdl+e+pw+dld+lgWrDp+ap+rayl + ld++++++aLr + + +a +r r mCs+C+t+ a+ +vsL++arrag+ 
  KIR61719.1   8 QIRAAFVNCTKGESKRLSVPRDLAERPWSDLDYLGWRDPQAPDRAYLATVLDGRPTALALRCP-SPTAAQRPRGMCSICLTTPAG-GVSLMVARRAGKP 104
                 7**************************************************************.599999999********9665.************* PP

       FBP_C 100 grkgntvGtyiCadlaCslnvrgkkksa.earaeeeltveerierlrerlaafverv 155
                 g++gntvGtyiC+dlaCsl+vrg+k++  +ar +e+ t+ee+i+r+ ++laafv++v
  KIR61719.1 105 GQQGNTVGTYICSDLACSLYVRGRKDAGpGARLQESITLEEKIQRTVAHLAAFVAKV 161
                 ***************************99*************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.46
# Mc/sec: 1063.80
//
Query:       KIR61720.1  [L=156]
Description: hypothetical protein TK50_29740 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.018   15.3   0.7      0.026   14.8   0.7    1.2  1  DUF4383   Domain of unknown function (DUF4383)
       0.54    9.8   5.1        3.7    7.1   2.7    2.4  2  PGPGW     Putative transmembrane protein (PGPGW)


Domain annotation for each model (and alignments):
>> DUF4383  Domain of unknown function (DUF4383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.7   2.9e-06     0.026       4      81 ..      17      91 ..      15     101 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.9e-06
     DUF4383  4 allvGlvfllvGvlGfiPgltseydelalageasgakllglfqvnllhnlvhllvGvlglaaa.rsasgarlyllllgv 81
                all+ l+fl++ + G +  +   + +l+     s+++++gl++  +++ +v + +Gvlgl +  rs + ar    ++ +
  KIR61720.1 17 ALLCRLAFLAICLPGPA-LF---VAGLTVEPPPSTKDFWGLLAGDAFMTVVGVGFGVLGLRLVaRSRRDARHLSAAGVA 91
                56666667777666644.22...35788899999**************************8765999999876655444 PP

>> PGPGW  Putative transmembrane protein (PGPGW)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   2.7   0.00041       3.7       7      28 ..      15      36 ..      10      41 .. 0.86
   2 ?    2.4   0.0     0.012   1.1e+02      28      42 ..      62      76 ..      56      85 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00041
       PGPGW  7 lGwvvvvvGiiliplPGPGwlv 28
                +G++++ + +++i lPGP+++v
  KIR61720.1 15 IGALLCRLAFLAICLPGPALFV 36
                899***************9986 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.012
       PGPGW 28 vvflGLaiLslefew 42
                vv +G+++L+l+++ 
  KIR61720.1 62 VVGVGFGVLGLRLVA 76
                566889999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1237.39
//
Query:       KIR61721.1  [L=120]
Description: chromosome condensation protein CrcB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-26   91.7   6.5    3.2e-26   91.4   6.5    1.0  1  CRCB      CrcB-like protein, Camphor Resistance (CrcB)
  ------ inclusion threshold ------
      0.056   12.1   0.1      0.073   11.7   0.1    1.1  1  SNF       Sodium:neurotransmitter symporter family


Domain annotation for each model (and alignments):
>> CRCB  CrcB-like protein, Camphor Resistance (CrcB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   6.5   3.6e-30   3.2e-26       1      94 [.       4     111 ..       4     112 .. 0.94

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 3.6e-30
                 HHHHHHHHHHHHHHHHH.HHHHBE.....BHHHHHHHHHHHHHHHHHHH.........HHTTTHHHHHS-SHHHHHHHHHHHHHT-HHHHHHHHHHHHH CS
        CRCB   1 llvalggalGallRyllssllnkr.....plgtlavNvlGsfllgllla.........llttGflGglTTfStfvlelvslleegellaallyvllsvv 85 
                 ll+alg+a+Ga lRyl+++++++r     p+gtl+vNv+Gs++lg+l+a         ll+tGf+G+lTT+Stf +e+++l+++g+ l al+++l+sv+
  KIR61721.1   4 LLIALGAAVGAPLRYLTDRAVQSRhaspfPWGTLTVNVVGSLVLGALVAapvgpavsaLLGTGFCGALTTYSTFGYETLRLARDGSRLLALVNALTSVA 102
                 589**************9988888***999****************9998888888888**************************************** PP

                 HHHHHHHHH CS
        CRCB  86 lgllavvlg 94 
                 +gl a++lg
  KIR61721.1 103 AGLGAATLG 111
                 ***999887 PP

>> SNF  Sodium:neurotransmitter symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   8.2e-06     0.073     262     314 ..      63     116 ..      54     119 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.2e-06
         SNF 262 lgigf.GvlialasYnkfennvyrda.llvslinsltsvlaglvvFsvlGfmaee 314
                 lg gf G+l++++ +   +  + rd+  l++l+n+ltsv agl   + lG+ a+ 
  KIR61721.1  63 LGTGFcGALTTYSTFGYETLRLARDGsRLLALVNALTSVAAGLGA-ATLGYAATR 116
                 567765899999999999999999962699*************96.889**9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 906.72
//
Query:       KIR61722.1  [L=322]
Description: hypothetical protein TK50_29770 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-21   76.4   0.4    4.3e-21   76.4   0.4    1.9  2  ADH_zinc_N_2  Zinc-binding dehydrogenase
    2.7e-16   59.8   2.4    2.7e-16   59.8   2.4    1.8  2  ADH_zinc_N    Zinc-binding dehydrogenase
    1.5e-05   24.8   0.0    5.3e-05   23.1   0.0    1.9  2  ADH_N         Alcohol dehydrogenase GroES-like domain
     0.0048   16.4   3.6       0.01   15.3   3.6    1.5  1  adh_short     short chain dehydrogenase
  ------ inclusion threshold ------
      0.083   13.2   1.8      0.088   13.1   0.4    1.6  2  TrkA_N        TrkA-N domain
       0.16   11.9   0.0       0.39   10.6   0.0    1.7  1  ADH_N_2       N-terminal domain of oxidoreductase


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2       1.6   4.8e+03      25      49 ..     132     157 ..     114     181 .. 0.43
   2 !   76.4   0.4   1.4e-24   4.3e-21       1     133 []     185     320 ..     185     320 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.6
                   EEEES-H...HHHH.HHHHHHEEEE.EEE CS
  ADH_zinc_N_2  25 vvldtvg...gealleaslkvlpgg.Grl 49 
                   +vld++g   g+     ++++ +gg G l
    KIR61722.1 132 AVLDLAGvrpGDRV---LVTAAAGGaGAL 157
                   44455443221111...112222221332 PP

  == domain 2  score: 76.4 bits;  conditional E-value: 1.4e-24
                   TT-SEEEETTSTTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.....-HHHH CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe...aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas....aqadil 90 
                   lG++ v+dy ++d++   +a+  +gvDv ld +gg++  +a+++++++gGr++ +g+p   +a+++pa+ +++r+++++ +  +++     ++a+ l
    KIR61722.1 185 LGVTDVVDYSAPDWTdrvRAV-LGGVDVLLDGAGGAYG-RAAHDLVAPGGRVCAYGAPAGGFAVPEPAS-ARTRGITVTDIEALRTAgpqvRRAH-L 277
                   89*************888665.367***********99.*******888*******9997777777776.4455555544443333357777888.9 PP

                   HHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  91 eelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                    + ++  + G+++p v+++fpl++aa+Ahr++e ++a+GK  l
    KIR61722.1 278 LAALDAAATGRVTPLVGQTFPLDRAADAHRAVEDRAAVGKTLL 320
                   ****************************************865 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       0.7   2.1e+03      56      86 ..     102     131 ..      86     138 .. 0.80
   2 !   59.8   2.4   8.9e-20   2.7e-16       2      95 ..     154     244 ..     153     273 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.7
                 TSSEEEEEESSCSHHHHHHHHHCEEEEEEEE CS
  ADH_zinc_N  56 gegvdvvfecvGsgatleaalkllkpgGrlv 86 
                 + +vd v+ +++   +l++a +ll+ g + +
  KIR61722.1 102 PVPVDDVLPVPA-AVSLRDAAALLTDGATAF 131
                 557899999999.999999999999998765 PP

  == domain 2  score: 59.8 bits;  conditional E-value: 8.9e-20
                 HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEE CS
  ADH_zinc_N   2 vGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgee 95 
                  G ++vq+A+a+Ga+v+a+++   k + +++lG++ v++y +a d+ +r+++  g  gvdv ++ +G ga  +aa +l++pgGr+  +G++ g+ 
  KIR61722.1 154 AGALLVQAARAAGARVVAAARGTAKGDALRRLGVTDVVDY-SApDWTDRVRAVLG--GVDVLLDGAG-GAYGRAAHDLVAPGGRVCAYGAPAGGF 244
                 5899************************************.888**********4..9*********.*********************977655 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.8e-08   5.3e-05       1      63 [.      27      91 ..      27      97 .. 0.94
   2 ?   -2.1   0.0       1.2   3.6e+03      51      64 ..     137     150 ..     134     155 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.8e-08
                TTEEEEEEEEEEE-HHHHHHHTTS..TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-S CS
       ADH_N  1 pgevlikvkaagiCgsDlhilkgg..kelevklplilGHEivGeveevgpevkklkvGdrVvvep 63
                pgev++++++a +   D  i  g+  ++++v++p  +G  ++G+v++vgp+v+    G+rVv+  
  KIR61722.1 27 PGEVVVETAYANVLWIDTAIRAGRagQWFPVRPPYRPGSGVSGTVSAVGPGVDPAWAGRRVVART 91
                589*****************9999999**********************************9865 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                 CS--TT-EEEE-SE CS
       ADH_N  51 kklkvGdrVvvepl 64 
                  +++ GdrV+v ++
  KIR61722.1 137 AGVRPGDRVLVTAA 150
                 56899****99765 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   3.6   3.4e-06      0.01       3      94 ..     145     225 ..     143     230 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.4e-06
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGG CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfs 94 
                 vlvt a++G G  ++++  ++Ga+vv+++r  +k   ++  l+          +Dv d++ + +  +++++ lg++dvL  +AG +  ++++
  KIR61722.1 145 VLVTAAAGGAGALLVQAARAAGARVVAAARGTAKG-DALRRLG---------VTDVVDYS-APDWTDRVRAVLGGVDVLLDGAGGAYGRAAH 225
                 9******************************9999.4444444.........56777765.46778899999************96555555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4     3e-05     0.088      49     114 ..     128     191 ..     115     192 .. 0.91
   2 ?   -2.4   0.0       1.8   5.4e+03      49      73 ..     259     283 ..     257     309 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3e-05
                 TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEESSGGGHHHHHHHTTSEEE CS
      TrkA_N  49 atdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraqdpehaellkklgadvvi 114
                 at  +vL+ ag+   d v++++    a +l+v++a+    +++++a a+  ++ ++l++lg++ v+
  KIR61722.1 128 ATAFAVLDLAGVRPGDRVLVTAAAGGAGALLVQAARA--AGARVVAAARGTAKGDALRRLGVTDVV 191
                 677899*****************************97..4478*******************9987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
                 TTSHHHHHHTTGGGESEEEE-SSSH CS
      TrkA_N  49 atdeevLeeagiekadaviaatgdd 73 
                 +td e+L+ ag +  +a + a+ d 
  KIR61722.1 259 VTDIEALRTAGPQVRRAHLLAALDA 283
                 6888888888877666555555444 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013      0.39      16      47 ..      13      47 ..       7      92 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
     ADH_N_2 16 sdfeleeeelpelkdGevlvralylSv...DPymR 47
                + ++l+e++ p++++Gev+v++ y  v   D ++R
  KIR61722.1 13 EVLTLTEAPDPSPGPGEVVVETAYANVlwiDTAIR 47
                667899*****************965422266666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2547.02
//
Query:       KIR61723.1  [L=973]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-25   90.4   4.1    1.7e-25   90.4   4.1    4.4  4  AAA_16          AAA ATPase domain
      3e-19   68.3   0.1    5.6e-19   67.4   0.1    1.5  1  GerE            Bacterial regulatory proteins, luxR family
    4.4e-06   26.3   1.8    7.8e-05   22.3   0.0    3.5  4  Sigma70_r4_2    Sigma-70, region 4
    4.5e-06   27.0   0.1    2.6e-05   24.5   0.0    2.4  1  AAA_22          AAA domain
    1.2e-05   24.7   0.4    0.00055   19.4   0.1    3.1  2  Sigma70_r4      Sigma-70, region 4
    0.00016   21.9  51.7     0.0017   18.6   3.3    7.5  6  TPR_12          Tetratricopeptide repeat
     0.0029   17.4   0.1      0.028   14.2   0.1    2.8  1  HTH_23          Homeodomain-like domain
  ------ inclusion threshold ------
      0.067   12.5   0.3       0.29   10.4   0.0    2.3  2  Zeta_toxin      Zeta toxin
      0.068   13.1   0.0       0.53   10.1   0.0    2.3  1  ATPase_2        ATPase domain predominantly from Archaea
      0.089   13.0  33.3        4.8    7.5   4.1    8.2  8  TPR_2           Tetratricopeptide repeat
       0.21   11.5   2.7        3.5    7.5   2.7    2.5  1  NACHT           NACHT domain
       0.23   11.9   1.3        2.2    8.8   0.1    2.9  2  ParD_antitoxin  Bacterial antitoxin of ParD toxin-antitoxin t
       0.66   10.1   7.3         65    3.9   1.1    4.5  3  TPR_7           Tetratricopeptide repeat
        1.2    9.2   6.4       0.52   10.4   3.0    2.3  3  DUF627          Protein of unknown function (DUF627)
        6.6    6.9   7.8         37    4.5   1.3    3.5  2  ANAPC5          Anaphase-promoting complex subunit 5
        9.2    6.7   9.4         12    6.3   2.1    4.1  3  TPR_20          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   4.1   1.5e-28   1.7e-25       1     164 [.       9     168 ..       9     175 .. 0.85
   2 ?   -2.3   2.2       4.4   4.9e+03      92      92 ..     388     388 ..     307     471 .. 0.49
   3 ?   -3.0   4.1       7.3   8.2e+03      58     135 ..     444     529 ..     432     537 .. 0.46
   4 ?   -0.9   2.4       1.7   1.9e+03      53     134 ..     494     582 ..     472     590 .. 0.54

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 1.5e-28
      AAA_16   1 rlvGReeeleqL.lsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawr 98 
                 +lvGR + l++L  ++l+ v  g++ +v+++GesGvGK++l+re+ +++++ g+++l+g+c + + + p+ +l+qal   + + ++l+++ ++  +a r
  KIR61723.1   9 PLVGRADHLATLrSALLDGVGPGQTAAVFVTGESGVGKTRLLREAGDRFRAGGALVLTGTCLDIGDSSPLHPLLQAL---RRFDAELTASHARTSSAVR 104
                 69**********5555669999999****************************************************...5788888886776666666 PP

      AAA_16  99 ekleealaavpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslql.laaLlrlles 164
                   l+  +  +  + +++a +lle ++r l l ++ +rplvlvlDdlqw+d +++ql l++L+ l++ 
  KIR61723.1 105 GLLQMFA--AETAGPDGAGALLERVSRGLHLVAQ-GRPLVLVLDDLQWVDRSTRQLlLYLLAGLGDL 168
                 6555544..47777888899*********99999.99*******************66666666554 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.4
      AAA_16  92 a 92 
                  
  KIR61723.1 388 V 388
                 1 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 7.3
      AAA_16  58 gkcdqlesaipysa.laqalareellrqllde.......aesaeleawrekleealaavpelagaeasrllellkrllallsrder 135
                  +c ++ +a++++  la+a ++   ++   ++        +sa +ea  ++ ++a+ +++  ++ +a +l+ell +l +++  +er
  KIR61723.1 444 HHCGEHARALSLLEeLADAEDAPPACALHIRRarylaaaGRSAPAEAEYRRALAAADCTSRERATAAAHLAELLLHLGRYADAGER 529
                 55555533333333333333333333333333222211122222222222223333344555555558888888888887776655 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.7
      AAA_16  53 giflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala....avpelagaea.....srllellkrllallsrde 134
                   +++++c++ e+a++ ++la++l   +l r  ++ ++++e+ + +++ e++++    a+ +l  +ea      + l++++++l+ ++r +
  KIR61723.1 494 RALAAADCTSRERATAAAHLAELL-L-HLGRYADAGERAREALELAAEVEGSVSevvlASMALGFSEAyledpDAGLAVMREALDTAERAG 582
                 344667777776666655566666.2.3444443333344444444444444445666444444444455555666666666666666655 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.1     5e-22   5.6e-19       2      54 ..     912     964 ..     911     967 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 5e-22
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelv 54 
                  L+ RErevL+ +aeG++nkeI+++l+iSe+T+ vh+s+i+ KL+v+ rv++ 
  KIR61723.1 912 MLTAREREVLAAVAEGLTNKEIGQRLFISERTIGVHVSHIFDKLQVRTRVQAS 964
                 69*************************************************85 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       0.3   3.3e+02      10      29 ..     257     275 ..     249     282 .. 0.82
   2 ?   -3.6   0.0       8.2   9.2e+03      10      21 ..     349     360 ..     342     361 .. 0.74
   3 ?   -2.2   0.0       3.1   3.4e+03      13      30 ..     528     545 ..     528     548 .. 0.77
   4 !   22.3   0.0     7e-08   7.8e-05       8      50 ..     910     951 ..     907     955 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.3
                   TS-HHHHHHHHHHHTS---H CS
  Sigma70_r4_2  10 eLperqreifllryleglsy 29 
                    L+e  re+fl  +++ l++
    KIR61723.1 257 GLSETLREVFLA-RVDALPQ 275
                   69*********9.5777766 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 8.2
                   TS-HHHHHHHHH CS
  Sigma70_r4_2  10 eLperqreifll 21 
                   +L  r+ e++++
    KIR61723.1 349 ALHRRYAEALTM 360
                   567778888877 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.1
                   HHHHHHHHHHHTS---HH CS
  Sigma70_r4_2  13 erqreifllryleglsyk 30 
                   er re+++l ++ + s  
    KIR61723.1 528 ERAREALELAAEVEGSVS 545
                   6899***99988666655 PP

  == domain 4  score: 22.3 bits;  conditional E-value: 7e-08
                   HTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHH CS
  Sigma70_r4_2   8 laeLperqreifllryleglsykEIAellgisegtVksrlsRA 50 
                   la+L+ r+re++     egl+ kEI ++l ise+t+  ++s  
    KIR61723.1 910 LAMLTAREREVLAA-VAEGLTNKEIGQRLFISERTIGVHVSHI 951
                   89************.79**********************9876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   2.3e-08   2.6e-05       7     112 ..      35     161 ..      31     182 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2.3e-08
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee.......................erpevv..fvtlpsstsskdllrellralglelkaerlsseelle 80 
                  ++vtGesG+GKT+llr+  +++ +                                + +  + t+++  +s+   r ll+ +  e+ + ++   +lle
  KIR61723.1  35 AVFVTGESGVGKTRLLREAGDRFRAG----GalvltgtcldigdssplhpllqaL--RRFdaELTASHARTSSA-VRGLLQMFAAETAG-PDGAGALLE 125
                 578********************654....1335588888888888887777442..33311333333333333.35555555555555.677778888 PP

      AAA_22  81 aleqalrarav..ielliiDEaqhlr.s.eealeeL 112
                 ++ + l+  a   + +l++D+ q ++ s  ++l +L
  KIR61723.1 126 RVSRGLHLVAQgrPLVLVLDDLQWVDrStRQLLLYL 161
                 888777766667789*********987435555544 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.17   1.9e+02       4      23 ..     341     360 ..     339     362 .. 0.89
   2 !   19.4   0.1   4.9e-07   0.00055       2      49 ..     910     956 ..     910     957 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.17
                 HS-HHHHHHHHHHHTTT--H CS
  Sigma70_r4   4 sLpererevlelrfgeglTl 23 
                 +L + er  l  r+ e lT+
  KIR61723.1 341 ELLPAERSALHRRYAEALTM 360
                 67799***********9997 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 4.9e-07
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLR 49 
                 La L++rerevl  +  eglT +EIg+rl iS+ ++  + +  ++kL+
  KIR61723.1 910 LAMLTAREREVLAAV-AEGLTNKEIGQRLFISERTIGVHVSHIFDKLQ 956
                 678*********987.5899****************999999999986 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7  11.4    0.0038       4.2       2      75 ..     432     499 ..     431     500 .. 0.92
   2 !   18.6   3.3   1.5e-06    0.0017       3      41 ..     507     545 ..     505     552 .. 0.84
   3 !   11.5   0.2   0.00024      0.27       5      55 ..     552     598 ..     546     600 .. 0.88
   4 ?    1.5   0.0      0.33   3.7e+02      13      32 ..     640     659 ..     634     676 .. 0.83
   5 ?    3.3   0.0     0.088        99       7      28 ..     710     731 ..     705     742 .. 0.82
   6 ?    3.7   1.9     0.069        77      10      54 ..     841     886 ..     833     896 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0038
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 +a +l++ a++ ++ g+++ Al+lle+  ++      +d p +++  +  +r++ a+gr + A++ +++ala+a
  KIR61723.1 432 RAELLRHAAEAAHHCGEHARALSLLEELADA------EDAPPACALHIRRARYLAAAGRSAPAEAEYRRALAAA 499
                 68899899********************333......6999******************************986 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.5e-06
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdh 41 
                 ata+ +la++l++lgry++A e  ++ale+a ++ G  +
  KIR61723.1 507 ATAAAHLAELLLHLGRYADAGERAREALELAAEVEGSVS 545
                 677768***************************988655 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00024
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrly 55 
                 +   l+  +++l++ d  l+  ++al+ a+r+  p+   +a ++  L++l+
  KIR61723.1 552 M--ALGFSEAYLEDPDAGLAVMREALDTAERAGRPED--VACAYLHLAELL 598
                 3..69***************************88877..*********986 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.33
      TPR_12  13 lrrlgrydeAlellekalei 32 
                 l+r g+++eA++   +al+ 
  KIR61723.1 640 LFRVGQWAEAEKVVAAALRH 659
                 78899999999999999875 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.088
      TPR_12   7 nnlaavlrrlgrydeAlellek 28 
                 + +a + +++gr+d A++  ++
  KIR61723.1 710 TLRAGLAMWQGRHDLARQAVQR 731
                 468999999******9998776 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.069
      TPR_12  10 aavl.rrlgrydeAlellekaleiarrllGpdhpltattlrnLgrl 54 
                 a++l +r+ r + A +ll++a+++a+ l  +    +++tl + +r+
  KIR61723.1 841 AEALlARRTRTATAGKLLREAYQVAQGLGAEPLSTEIRTLATRARV 886
                 5555378999****************99666666778888877777 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   2.5e-05     0.028       9      34 ..     919     944 ..     913     949 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.5e-05
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTv 34 
                 ++l ++aeGl+ +eI ++L +s+rT+
  KIR61723.1 919 EVLAAVAEGLTNKEIGQRLFISERTI 944
                 68999********************8 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00026      0.29      17      86 ..      34     109 ..      28     134 .. 0.68
   2 ?   -4.0   0.1       6.6   7.4e+03     133     161 ..     494     531 ..     492     541 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
  Zeta_toxin  17 klillgGqpGAGKselaellkdelerqgnvvrldpD.....dlRelhPeyeeilk..adpkkaseltqkdaselvek 86 
                 +++++ G +G GK++l++++ d+++ +g++++l ++     d  +lhP  +++++  a+ +   + t+++++ l ++
  KIR61723.1  34 AAVFVTGESGVGKTRLLREAGDRFR-AGGALVLTGTcldigDSSPLHPLLQALRRfdAELTASHARTSSAVRGLLQM 109
                 79*********************95.777777655411111556777777777663222223334455556555555 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6.6
  Zeta_toxin 133 kelSrlgvldRyeeevae.........gRlvpkeehde 161
                 ++l++ ++ +R+++++a+         gR+++  e  +
  KIR61723.1 494 RALAAADCTSRERATAAAhlaelllhlGRYADAGERAR 531
                 56788889999998844456678888888888766555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00048      0.53      19      45 ..      32      58 ..      22     247 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00048
    ATPase_2 19 pneiyfiYGpegsGKtaLlkeiienle 45
                +   +f++G  g+GKt+Ll+e+  + +
  KIR61723.1 32 QTAAVFVTGESGVGKTRLLREAGDRFR 58
                56779***************9877665 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1         4   4.4e+03       6      30 ..     369     393 ..     368     397 .. 0.78
   2 ?    1.7   0.3      0.33   3.7e+02      17      31 ..     400     414 ..     386     415 .. 0.82
   3 ?    1.2   2.1      0.47   5.2e+02       1      27 [.     433     459 ..     433     463 .. 0.91
   4 ?    5.2   2.9     0.025        28       3      29 ..     471     497 ..     469     500 .. 0.92
   5 ?    7.5   4.1    0.0043       4.8       3      31 ..     509     537 ..     507     539 .. 0.90
   6 ?    1.6   0.0      0.34   3.8e+02       5      29 ..     552     576 ..     548     580 .. 0.89
   7 ?    5.5   0.0      0.02        22      11      32 ..     640     661 ..     638     662 .. 0.91
   8 ?    1.6   0.0      0.34   3.8e+02       6      28 ..     711     733 ..     707     737 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4
       TPR_2   6 nlGlayyklgdyeeAleafekAlel 30 
                 +l+  ++ +g++++Al a  +A + 
  KIR61723.1 369 RLAHHWRLAGEPARALPAAVAAAQE 393
                 6788888999999999888777765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.33
       TPR_2  17 yeeAleafekAleld 31 
                 y+eA++++  Al+l+
  KIR61723.1 400 YAEAHRHWSVALQLA 414
                 9***********996 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.47
       TPR_2   1 aealynlGlayyklgdyeeAleafekA 27 
                 ae+l   ++a+ + g++++Al ++e+ 
  KIR61723.1 433 AELLRHAAEAAHHCGEHARALSLLEEL 459
                 7899999****************9997 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.025
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                 ++ ++++ ++++g+ + A++ +++Al+
  KIR61723.1 471 LHIRRARYLAAAGRSAPAEAEYRRALA 497
                 799***********************8 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.0043
       TPR_2   3 alynlGlayyklgdyeeAleafekAleld 31 
                 a   l++++++lg+y++A e  ++Alel+
  KIR61723.1 509 AAAHLAELLLHLGRYADAGERAREALELA 537
                 55689**********************96 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.34
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 ++lG + ++l d++  l+ +++Al 
  KIR61723.1 552 MALGFSEAYLEDPDAGLAVMREALD 576
                 689********************96 PP

  == domain 7  score: 5.5 bits;  conditional E-value: 0.02
       TPR_2  11 yyklgdyeeAleafekAleldP 32 
                 +++ g+++eA++   +Al++ P
  KIR61723.1 640 LFRVGQWAEAEKVVAAALRHRP 661
                 7899**************9988 PP

  == domain 8  score: 1.6 bits;  conditional E-value: 0.34
       TPR_2   6 nlGlayyklgdyeeAleafekAl 28 
                  ++ +++ +g+++ A++a ++ l
  KIR61723.1 711 LRAGLAMWQGRHDLARQAVQRGL 733
                 67778999**********99977 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   2.7    0.0032       3.5       3     143 ..      36     201 ..      34     220 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0032
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C....................CHHHHCCSCC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvse....................vwavllelpe 81 
                 v+++Ge+G+GKT Ll++  +  ++g        lv+  ++ ++ +s++   l + l++   e+ a + +                    +   lle+  
  KIR61723.1  36 VFVTGESGVGKTRLLREAGDRFRAGG------ALVLTGTCLDIGDSSPLHPLLQALRRFDAELTASHARtssavrgllqmfaaetagpdGAGALLERVS 128
                 89*************98777777666......5666667766666666633334443333333333333344455577777777777773333333333 PP

                 CEE..........EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHH...HCTTSSCE....... CS
       NACHT  82 rlL..........lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrd...leeqleea......i 143
                 r L          l+lD+l  + +  +q        lL  l+ +    + s+l++vr ++l+    l++ l e       +
  KIR61723.1 129 RGLhlvaqgrplvLVLDDLQWVDRSTRQ--------LLLYLLAGLGDLQLSVLAAVRAESLQGahpLRRVLTELrrlrsvR 201
                 3334444444444777777777765555........666666665555666677777666654555555555555554444 PP

>> ParD_antitoxin  Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2      0.35   3.9e+02      23      47 ..     520     544 ..     516     547 .. 0.87
   2 ?    8.8   0.1     0.002       2.2      27      65 ..     542     586 ..     535     592 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.35
                     TTS-SSHHHHHHHHHHHHHHHHHHH CS
  ParD_antitoxin  23 aGrYgsaseviraaLrLLeeretkl 47 
                      GrY  a e  r aL L  e e  +
      KIR61723.1 520 LGRYADAGERAREALELAAEVEGSV 544
                     59***************99888665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.002
                     SSHHHHHHHHHHH......HHHHHHHHHHHHHHHHHHHCT-EESS CS
  ParD_antitoxin  27 gsaseviraaLrL......LeeretklkaLreaLeegeqsGeaep 65 
                     gs sev+ a++ L      Le+ ++ l+ +reaL + e++G +e+
      KIR61723.1 542 GSVSEVVLASMALgfseayLEDPDAGLAVMREALDTAERAGRPED 586
                     89999999988766666669*********************9986 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.4     0.092     1e+02       6      26 ..     440     460 ..     435     481 .. 0.80
   2 ?    3.9   1.1     0.058        65       4      33 ..     512     541 ..     509     544 .. 0.87
   3 ?    2.8   0.0      0.13   1.5e+02      10      35 ..     641     664 ..     636     665 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.092
       TPR_7   6 arlysrlGdyeeAielyeqsL 26 
                 a++ + +G++++A++l+e++ 
  KIR61723.1 440 AEAAHHCGEHARALSLLEELA 460
                 7788889***********944 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.058
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkdpe 33 
                  La+l   lG+y++A e  +++L+l+ + e
  KIR61723.1 512 HLAELLLHLGRYADAGERAREALELAAEVE 541
                 69****************999999886655 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.13
       TPR_7  10 srlGdyeeAielyeqsLaltkdpeda 35 
                 +r+G+++eA+++  +  al+ +p++a
  KIR61723.1 641 FRVGQWAEAEKVVAA--ALRHRPSGA 664
                 799************..999988875 PP

>> DUF627  Protein of unknown function (DUF627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       9.7   1.1e+04      61      74 ..     386     399 ..     384     411 .. 0.76
   2 ?   10.4   3.0   0.00046      0.52       2      89 ..     440     526 ..     439     539 .. 0.77
   3 ?   -3.6   0.0       9.8   1.1e+04      49      74 ..     561     586 ..     558     596 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9.7
      DUF627  61 asvecfseavelsr 74 
                 a+v +++ea++l+ 
  KIR61723.1 386 AAVAAAQEAERLHG 399
                 89999999999973 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00046
      DUF627   2 AkdllargnhikALeiiedlisrhgedeksallhrlqGtifvklakktedpdvkfayllasvecfseavels.rfyArsLfelasqlgs 89 
                 A+++   g+h +AL ++e+l + +     +  lh+ ++  +++ a ++   +++ +  la+ +c+s++   + +  A++L++l++  + 
  KIR61723.1 440 AEAAHHCGEHARALSLLEELADAEDAPPAC-ALHIRRARYLAA-AGRSAPAEAEYRRALAAADCTSRERATAaAHLAELLLHLGRYADA 526
                 6677788*************9999887666.677778887655.55666778899999********9988876888********95544 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 9.8
      DUF627  49 tedpdvkfayllasvecfseavelsr 74 
                 +edpd+  a ++ +++ +++a +   
  KIR61723.1 561 LEDPDAGLAVMREALDTAERAGRPED 586
                 57777777888888887777766553 PP

>> ANAPC5  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.6     0.097   1.1e+02      40      77 ..     360     397 ..     344     413 .. 0.78
   2 ?    4.5   1.3     0.033        37      42      75 ..     508     541 ..     500     599 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.097
      ANAPC5  40 yqyalLnlaslhadfghneeAvkaleeairlArenkDk 77 
                    a L+ a+l ++   + e  +al  a++ A+e +  
  KIR61723.1 360 MAPAELHQARLAHHWRLAGEPARALPAAVAAAQEAERL 397
                 445689****************************8755 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.033
      ANAPC5  42 yalLnlaslhadfghneeAvkaleeairlArenk 75 
                 +a+ +la l  ++g +++A ++ +ea +lA e +
  KIR61723.1 508 TAAAHLAELLLHLGRYADAGERAREALELAAEVE 541
                 67889999********************998854 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.98   1.1e+03      47      73 ..     141     167 ..     129     177 .. 0.86
   2 ?    6.3   2.1     0.011        12      19      87 ..     430     498 ..     427     499 .. 0.93
   3 ?    0.2   0.3      0.85   9.5e+02      23      49 ..     508     534 ..     500     545 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.98
      TPR_20  47 eilkrdrkweddaarkqllkifealgs 73 
                  ++  d++w d + r+ ll +++ lg+
  KIR61723.1 141 VLVLDDLQWVDRSTRQLLLYLLAGLGD 167
                 5677899**************999987 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.011
      TPR_20  19 pddldarldlAlallaagryeeAleqLleilkrdrkweddaarkqllkifealgsqdplvakyRrkLss 87 
                 pd  ++    A+a ++ g+++ Al++L e+  ++ +    a   +   +++a+g + p+ a+yRr L++
  KIR61723.1 430 PDRAELLRHAAEAAHHCGEHARALSLLEELADAEDAPPACALHIRRARYLAAAGRSAPAEAEYRRALAA 498
                 66777778899********************************************************87 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.85
      TPR_20  23 darldlAlallaagryeeAleqLleil 49 
                  a+  lA++ll+ gry++A e+  e l
  KIR61723.1 508 TAAAHLAELLLHLGRYADAGERAREAL 534
                 577889999999999999988866655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.96u 0.38s 00:00:01.34 Elapsed: 00:00:00.62
# Mc/sec: 4728.72
//
Query:       KIR61724.1  [L=256]
Description: hypothetical protein TK50_29790 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1679.20
//
Query:       KIR61725.1  [L=249]
Description: kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-13   48.9   9.7    6.6e-09   36.0   1.5    2.4  2  APH             Phosphotransferase enzyme family
      0.009   15.6   0.0       0.11   12.0   0.0    1.9  2  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.7   2.5e-07    0.0023      40     114 ..      34     101 ..       7     107 .. 0.79
   2 !   36.0   1.5   7.3e-13   6.6e-09     158     237 ..     109     191 ..     103     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.5e-07
                 HHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTT CS
         APH  40 evallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalp 114
                   all++L++ag+  +P++l     ++++g   +++eyvpg++ +       l+e l+++g++la+lh++ + + p
  KIR61725.1  34 VDALLAHLHDAGFpGAPRPLG----RDDRG--RQVLEYVPGAVGDV-TGTYPLGE-LAEVGALLADLHRAVAGFVP 101
                 5799*********76******....55555..58************.33344555.5599999*****99555555 PP

  == domain 2  score: 36.0 bits;  conditional E-value: 7.3e-13
                 HH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCH.......HHCSCHCCCHCHHHHHHHHCS-HHHHCC CS
         APH 158 allpgelptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavll.......rswtseldpeflaallrayeqeaglarl 237
                 +  p++ +  ++H D  p+Nl+  p+++    +iD+++ag+g + ++la+++       ++ + +++++ l+al+++y+  +g++r+
  KIR61725.1 109 RVIPPDREDLVCHHDAAPWNLIRSPRGWV---LIDWDCAGPGSRPWELAYAAqsmagmrADRPVPESAARLRALVDGYG-LDGPERA 191
                 4445577999**************88555...8*******************87766633356666699*********9.4666654 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.022   1.9e+02      37      96 ..      50     109 ..      37     111 .. 0.82
   2 !   12.0   0.0   1.2e-05      0.11     147     191 ..     119     161 ..     113     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.022
                     S-EEEEETTEEEE.E--TCEE--TTGGGCHHHHHHHHHHHHHHTTCHH.TTSSSS-HHHHH CS
  Choline_kinase  37 pklygifenGrie.efiesrtlstedlrepeiskkiAkklaelHsleleseskespslwkt 96 
                     p+ +g+++ Gr   e++++   + +  +    ++++++ la lH+ +   ++  +p++w++
      KIR61725.1  50 PRPLGRDDRGRQVlEYVPGAVGDVTGTYPLGELAEVGALLADLHRAVA-GFVPPQPAVWQR 109
                     6667777777744488888888888888888899*************9.899999999997 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.2e-05
                     EE-S--SGGGEEE.-CTTEEEE--GTT-EEEEHHHHHHHHHHHTT CS
  Choline_kinase 147 fcHnDlqegNillnkeekklvlIDFEYagynyrgfDlanhfiEwa 191
                      cH D  + N++   + +  vlID+  ag+  r ++la     +a
      KIR61725.1 119 VCHHDAAPWNLIR--SPRGWVLIDWDCAGPGSRPWELAYAAQSMA 161
                     6************..89999*****************97766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1816.79
//
Query:       KIR61726.1  [L=520]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.7    8.2  47.0        0.3   11.6   0.3    8.4  8  Chlam_PMP  Chlamydia polymorphic membrane protein (Chlamydia_


Domain annotation for each model (and alignments):
>> Chlam_PMP  Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.03   5.4e+02      13      24 ..     261     275 ..     214     277 .. 0.74
   2 ?    2.9   1.1      0.01   1.8e+02       3      23 ..     287     302 ..     285     302 .. 0.64
   3 ?    5.9   0.5    0.0011        20       2      26 ..     314     329 ..     313     331 .. 0.85
   4 ?   -1.8   0.4      0.32   5.7e+03       7      25 ..     345     353 ..     342     355 .. 0.73
   5 ?    2.1   0.1     0.018   3.2e+02       5      27 ..     368     380 ..     364     381 .. 0.76
   6 ?    7.8   2.3   0.00027       4.9       2      26 ..     390     405 ..     389     406 .. 0.86
   7 ?   11.6   0.3   1.7e-05       0.3       3      27 ..     417     432 ..     415     433 .. 0.89
   8 ?    5.1   1.5     0.002        36       3      27 ..     443     461 ..     441     462 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.03
   Chlam_PMP  13 s...tptpaaggGGA 24 
                 +   + +p+ ggGG 
  KIR61726.1 261 VgstSVSPKEGGGGV 275
                 154456666677764 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.01
   Chlam_PMP   3 tFsnNtatvsstptpaaggGG 23 
                 +F +N+a         ++gGG
  KIR61726.1 287 RFVGNSAAGA-----EGKGGG 302
                 79*****543.....344444 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0011
   Chlam_PMP   2 itFsnNtatvsstptpaaggGGAIy 26 
                 ++F +N+a          g+GG++ 
  KIR61726.1 314 TEFRDNSA---------NGYGGGLA 329
                 589*****.........99999975 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.32
   Chlam_PMP   7 NtatvsstptpaaggGGAI 25 
                 N a          g+GG++
  KIR61726.1 345 NIA----------GQGGGL 353
                 455..........899986 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.018
   Chlam_PMP   5 snNtatvsstptpaaggGGAIya 27 
                  +Nta          + GG+I +
  KIR61726.1 368 VDNTA----------KIGGGIAN 380
                 56888..........99999976 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.00027
   Chlam_PMP   2 itFsnNtatvsstptpaaggGGAIy 26 
                 +++ +Nta         +g+GG+I 
  KIR61726.1 390 LVVQGNTA---------SGNGGGIS 405
                 5678****.........*******7 PP

  == domain 7  score: 11.6 bits;  conditional E-value: 1.7e-05
   Chlam_PMP   3 tFsnNtatvsstptpaaggGGAIya 27 
                 ++s+N+a          g+GG+I+a
  KIR61726.1 417 VVSGNHA---------RGNGGGIFA 432
                 689****.........9*******8 PP

  == domain 8  score: 5.1 bits;  conditional E-value: 0.002
   Chlam_PMP   3 tFsnNtatvsstptpaaggGGAIya 27 
                 ++s+N+a        a + GG+Iy+
  KIR61726.1 443 EVSGNAA------VGAKSTGGGIYT 461
                 689****......6789*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.51
# Mc/sec: 3095.87
//
Query:       KIR61727.1  [L=69]
Description: hypothetical protein TK50_29810 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 476.89
//
Query:       KIR61728.1  [L=349]
Description: hypothetical protein TK50_29815 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-06   27.1   0.0    8.2e-06   26.3   0.0    1.3  1  HHH_5            Helix-hairpin-helix domain
    0.00044   20.5   0.0    0.00072   19.8   0.0    1.3  1  DUF4332          Domain of unknown function (DUF4332)
     0.0015   18.7   0.0     0.0023   18.1   0.0    1.2  1  Cdd1             Pathogenicity locus
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.024   14.5   0.0    1.3  1  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
      0.039   14.3   0.0      0.096   13.0   0.0    1.6  1  Nitro_FeMo-Co    Dinitrogenase iron-molybdenum cofactor
       0.25   11.4   0.0       0.36   10.9   0.0    1.2  1  TfoX_C           TfoX C-terminal domain


Domain annotation for each model (and alignments):
>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.8e-09   8.2e-06       4      39 ..     273     308 ..     270     311 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.8e-09
                 HHTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHT CS
       HHH_5   4 LlsvsGiGpktAlallsaGiesvedlaaadveeLak 39 
                   +++GiGpk+A al +aGi+++ +la++d+++L +
  KIR61728.1 273 FRRIQGIGPKMAAALQDAGIRTYRQLADLDEAALRE 308
                 5689***************************99975 PP

>> DUF4332  Domain of unknown function (DUF4332)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.4e-07   0.00072      54      95 ..     272     313 ..     267     331 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.4e-07
     DUF4332  54 dLarikgigeeyaeLLeaaGvdsvaeLaqrnpanLhqklkrl 95 
                 d+ ri+gig+++a+ L  aG+++ ++La    a L +++ + 
  KIR61728.1 272 DFRRIQGIGPKMAAALQDAGIRTYRQLADLDEAALRETIRAA 313
                 677****************************99999998875 PP

>> Cdd1  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   7.6e-07    0.0023       4      46 ..     269     311 ..     266     318 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.6e-07
        Cdd1   4 alkelqdiPniGkalaedlvelGirsveelkgedpeelyekle 46 
                 +++++++i +iG+++a+ l++ Gir+ ++l++ d ++l e ++
  KIR61728.1 269 SADDFRRIQGIGPKMAAALQDAGIRTYRQLADLDEAALRETIR 311
                 5789***************************999998877665 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     8e-06     0.024       3      38 ..     273     309 ..     271     316 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8e-06
  DNA_pol_lambd_f   3 FtkvyGVGpktAkkwyakGirtledlra.krakLtre 38 
                      F ++ G+Gpk A  + ++Girt  +l   ++a L + 
       KIR61728.1 273 FRRIQGIGPKMAAALQDAGIRTYRQLADlDEAALRET 309
                      889*******************988877655666655 PP

>> Nitro_FeMo-Co  Dinitrogenase iron-molybdenum cofactor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.2e-05     0.096      61      89 ..     277     304 ..     276     309 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.2e-05
                    SSSCHHHHHHHCTTTSEEEES-SSBHHHH CS
  Nitro_FeMo-Co  61 gkiGpralakleaagievykgaggtveea 89 
                    ++iGp+++a+l++agi+ y+ +  +++ea
     KIR61728.1 277 QGIGPKMAAALQDAGIRTYR-QLADLDEA 304
                    68******************.88888887 PP

>> TfoX_C  TfoX C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.36       5      34 ..     273     302 ..     269     321 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
      TfoX_C   5 LkdLpNlglklerlLkkaGIktveeLrelG 34 
                  ++++ +g+k+++ L+ aGI+t+++L++l 
  KIR61728.1 273 FRRIQGIGPKMAAALQDAGIRTYRQLADLD 302
                 5678889*******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2295.26
//
Query:       KIR61729.1  [L=449]
Description: FAD-binding monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.5e-18   64.7   4.9    5.5e-08   32.4   0.0    3.1  3  FAD_binding_3  FAD binding domain
     0.0012   19.0   1.3     0.0046   17.2   1.2    2.0  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0019   17.5   0.6     0.0076   15.5   0.1    1.9  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
       0.11   13.1   0.8       0.25   11.9   0.8    1.6  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.15   11.2   4.9      0.038   13.1   1.4    1.7  2  FAD_binding_2  FAD binding domain
       0.17   11.5   6.4       0.12   12.0   3.7    2.0  2  DAO            FAD dependent oxidoreductase
        0.2   10.7   0.0        1.8    7.6   0.0    2.0  2  SE             Squalene epoxidase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.1   2.3e-07    0.0006       4      37 ..       8      41 ..       6      44 .. 0.93
   2 !   13.4   0.0   1.4e-05     0.035     132     172 ..     138     173 ..     112     235 .. 0.74
   3 !   32.4   0.0   2.2e-11   5.5e-08     278     324 ..     323     369 ..     255     388 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.3e-07
                   EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSC CS
  FAD_binding_3  4 VlIVGaGpaGlmlallLseaGvrvvlvekrsttv 37
                   V+I+GaG  Gl la+ L++aG+ v + e+++t++
     KIR61729.1  8 VVIIGAGTGGLCLAHGLRRAGIGVSVHERHTTRA 41
                   9*****************************9875 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.4e-05
                    EECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHH CS
  FAD_binding_3 132 eqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktl 172
                    ++d+ +vta + d +     t + + lv+aDG +S+vr++ 
     KIR61729.1 138 QRDDGTVTAHFADGT-----TATGDLLVAADGTHSAVRRQY 173
                    345555666665554.....7788**************984 PP

  == domain 3  score: 32.4 bits;  conditional E-value: 2.2e-11
                    ESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTT CS
  FAD_binding_3 278 aekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkG 324
                    +  +++  v l GDA+H+++P  G+G Nta++Da  L+++  ++  G
     KIR61729.1 323 VPAWKSSTVTLLGDAIHTMTPGRGVGANTALRDAALLCRQVRLAAAG 369
                    34689999******************************987666655 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.2   1.8e-06    0.0046       1      29 [.      10      38 ..      10      43 .. 0.94
   2 ?   -3.3   0.0       4.3   1.1e+04      45      55 ..      75      85 ..      66      92 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.8e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   I+GaG +Gl++A+ L++ag+ v + e+++
     KIR61729.1 10 IIGAGTGGLCLAHGLRRAGIGVSVHERHT 38
                   9*******************999999985 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.3
                   ECTS---EEET CS
  NAD_binding_8 45 vdygahifhgs 55
                   +  g+++f+ +
     KIR61729.1 75 CARGPRYFNVV 85
                   56789999875 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1     3e-06    0.0076       2      32 ..       7      37 ..       6      69 .. 0.84
   2 ?   -0.2   0.0      0.18   4.7e+02     200     237 ..     127     165 ..     110     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3e-06
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvele 32
                 +vv+iG+G +Gl +a+ l++ag+ v + e+ 
   KIR61729.1  7 HVVIIGAGTGGLCLAHGLRRAGIGVSVHERH 37
                 7*********************999998533 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.18
                  EEESCEEEEEEETTE.EEEEEETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 200 vklgtsvkeidgnge.klevvledgeeidadlvvvavGv 237
                  v +g++++  d++++  ++ +  dg++   dl+v a G 
   KIR61729.1 127 VEFGKTFTHYDQRDDgTVTAHFADGTTATGDLLVAADGT 165
                  66778888888888888899**************99996 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8   9.7e-05      0.25       1      31 [.       7      37 ..       7      44 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.7e-05
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvvers 31
                +vv++G+G+ gl lA  l++ g  V+v er+
  KIR61729.1  7 HVVIIGAGTGGLCLAHGLRRAGIGVSVHERH 37
                89***********************999986 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.4   1.5e-05     0.038       2      30 ..       8      36 ..       7      43 .. 0.90
   2 ?   -1.8   0.1       0.5   1.3e+03     173     204 ..     153     187 ..     103     229 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.5e-05
                   EEEE--SHHHHHHHHHHHHTTT-EEEEES CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvek 30
                   v++iG+G +GL+ A+ +++aG  v v e 
     KIR61729.1  8 VVIIGAGTGGLCLAHGLRRAGIGVSVHER 36
                   9********************99988765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.5
                    EEEEEEEEET...TTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 173 rvtGavvenp...esgrevrirakavvlatgGfgr 204
                     +tG+ +      +s  ++++  +av+  +g ++ 
     KIR61729.1 153 TATGDLLVAAdgtHSAVRRQYLPHAVIRDAGTINI 187
                    33444333333333333334444455555555554 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.7   4.6e-05      0.12       1      29 [.       7      37 ..       7      57 .. 0.90
   2 ?   -1.8   0.0       0.7   1.8e+03     299     319 ..     243     266 ..     237     276 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.6e-05
                EEEEECTSHHHHHHHHHHHHTT..EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekg 29
                +vviiG+G  Gl+ A+ L r+g  V + e++
  KIR61729.1  7 HVVIIGAGTGGLCLAHGLRRAGigVSVHERH 37
                7*****************888899***9998 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.7
                 GCGEEEEEEEEEE..ETTS.SEEE CS
         DAO 299 lgdvlrkwaGlrp..lpdg.lpli 319
                 ++d+lr+w Glr   ++d+ +++i
  KIR61729.1 243 DADLLRRWPGLRHdtTRDNiNFII 266
                 57999*******974477766666 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.081   2.1e+02       3      23 ..     157     177 ..     155     205 .. 0.78
   2 ?    7.6   0.0   0.00069       1.8     128     165 ..     327     364 ..     289     383 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.081
          SE   3 kltvvcDGifsklRkelsdnk 23 
                  l v +DG++s +R++   + 
  KIR61729.1 157 DLLVAADGTHSAVRRQYLPHA 177
                 57899**********987554 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00069
          SE 128 ekkGlillGDalnmRHPltggGmtvalnDivllskllk 165
                 +++ + llGDa+    P  g G   al+D++ll + ++
  KIR61729.1 327 KSSTVTLLGDAIHTMTPGRGVGANTALRDAALLCRQVR 364
                 345689***************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 2977.08
//
Query:       KIR61730.1  [L=116]
Description: polyketide synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-37  127.5   0.0    2.5e-37  127.3   0.0    1.0  1  Cyclase_polyket  Polyketide synthesis cyclase


Domain annotation for each model (and alignments):
>> Cyclase_polyket  Polyketide synthesis cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   0.0   1.4e-41   2.5e-37       2     104 .]       3     104 ..       2     104 .. 0.98

  Alignments for each domain:
  == domain 1  score: 127.3 bits;  conditional E-value: 1.4e-41
  Cyclase_polyket   2 rtlivarmkpgseeevakifaesDatelPqlvGvrrRslfsfedlylHlieadeeaeealaearekpefkkvserlseyvspydpetWrspkda 95 
                      r liv+r+ pg+e +va+ifaesDatelP l+Gvr+Rsl+ ++dl++Hl+e+++  ++ala+ar++p + +v+erls++ spy p+ Wrsp+da
       KIR61730.1   3 RLLIVSRIIPGAEGRVAQIFAESDATELPGLTGVRHRSLYCLHDLCVHLMETADVDADALAAARNHPLYLQVNERLSAHTSPYLPT-WRSPRDA 95 
                      789***********************************************************************************.******* PP

  Cyclase_polyket  96 vaerfYrwe 104
                      +a +fY+w+
       KIR61730.1  96 IAGCFYSWD 104
                      ********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 772.86
//
Query:       KIR61731.1  [L=269]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-17   61.7   9.3    9.9e-17   61.7   9.3    1.5  1  BTAD      Bacterial transcriptional activator domain


Domain annotation for each model (and alignments):
>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   9.3   5.5e-21   9.9e-17      38     143 ..     136     240 ..     106     243 .. 0.90

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 5.5e-21
                 SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H CS
        BTAD  38 GpaladleagewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlrrlLaeeLgvepgp 136
                  ++l +  + +w+  ererl++lrl++le+ a+ +l+ Gr+ eal+ + +++a++PlrE+ hr++ r   + G+  eA  ++  +r+lL +eL +ep+p
  KIR61731.1 136 HDLLPGWYD-DWVLLERERLRQLRLHMLEQVARNHLAAGRHGEALEAALEAMAAEPLRETPHRLVVRVHLAEGNVFEAVHAFYAYRDLLLRELRLEPSP 233
                 445555555.9**************************************************************************************** PP

                 HHHHHHH CS
        BTAD 137 elralhe 143
                 +++al +
  KIR61731.1 234 AMTALLH 240
                 ****966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2141.84
//
Query:       KIR61732.1  [L=110]
Description: polyketide synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-43  145.6   0.0    5.6e-43  145.4   0.0    1.0  1  Cyclase_polyket  Polyketide synthesis cyclase


Domain annotation for each model (and alignments):
>> Cyclase_polyket  Polyketide synthesis cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4   0.0   3.1e-47   5.6e-43       2     104 .]       3     104 ..       2     104 .. 0.99

  Alignments for each domain:
  == domain 1  score: 145.4 bits;  conditional E-value: 3.1e-47
  Cyclase_polyket   2 rtlivarmkpgseeevakifaesDatelPqlvGvrrRslfsfedlylHlieadeeaeealaearekpefkkvserlseyvspydpetWrspkda 95 
                      r+liva+++p++ee+va+ifaesDatelP+l Gvr+Rsl+++ dly+Hl+e++++ e+a++ +re+pef++vs+rl++yvspy p+ Wrsp+da
       KIR61732.1   3 RSLIVAKVAPDAEERVAEIFAESDATELPHLAGVRHRSLYRLGDLYVHLLETERPGETAVEGIREHPEFARVSARLQPYVSPYLPT-WRSPRDA 95 
                      79************************************************************************************.******* PP

  Cyclase_polyket  96 vaerfYrwe 104
                      +a++fYrw+
       KIR61732.1  96 MARCFYRWD 104
                      ********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       199  (0.0110993); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 830.93
//
Query:       KIR61733.1  [L=242]
Description: cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-14   53.8   2.9    3.3e-14   53.4   2.9    1.2  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
    7.7e-13   48.8   1.2    1.2e-12   48.1   1.2    1.3  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
    4.1e-07   30.2   0.3    8.1e-07   29.3   0.3    1.5  1  PP-binding       Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   2.9   5.5e-18   3.3e-14       3     143 .]      86     227 ..      84     227 .. 0.86

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 5.5e-18
                      EEEEEEEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSESTSSSTTTEEEEECCCS......SEEEEEEEEEET.TTTEEEEEEE.SSS-TSEE CS
  Polyketide_cyc2   3 kvtvsvviaappekVwalvsdfenwprWhpevarveleggggpargvegtvrvggr......gtvreelvevdp.egrllsyrivkpvpvanyv 89 
                      +++ s+viaap   Vw+l  d +nwp    e+a++++ +++g++  v++++++         ++v e+ ++++  e r+++ +     p++ ++
       KIR61733.1  86 HTENSIVIAAPLRLVWELTNDVANWPNLFTEYASAQILERDGRT--VRFRLTMHPDengavwSWVSERTTDWENrEVRAHRVET---GPFEYMR 174
                      6789********************************98878884..445555544445789999********953777777777...7999889 PP

                      EEEEEEECCETEEEEEEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  90 atwtvtpdgggtrvtwtgefdagplggpfekpaaakavkgdleagLerLkarle 143
                        w+   +++gtr+tw  +f++ ++ +p++++ + + +  + + +L+ +k+r+e
       KIR61733.1 175 IHWRYDTEPEGTRMTWVQDFAM-HPSAPLDNAGMTERINTNSRVQLAVIKERIE 227
                      999999999************9.89999999999*****999999999999876 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   1.2     2e-16   1.2e-12       1     118 [.      93     211 ..      93     222 .. 0.79

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 2e-16
                     ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE.....EEEECSTTSSCEEEEEEEEEEETTT..EEECTTCCCCCEEEEEEEECTECCEEE CS
  Polyketide_cyc   1 vpapadqvyalvadvesypeflphcssvevleeaes..glsadlevgfggltesftarvtldppee..itfklvegdfkslegkWtieslppnsg 91 
                     ++ap+  v++l +dv ++p ++ ++ s+++le+++   +++ + +    g   s+++++t d +++   +  ++ g+f++++++W+    p+   
      KIR61733.1  93 IAAPLRLVWELTNDVANWPNLFTEYASAQILERDGRtvRFRLTMHPDENGAVWSWVSERTTDWENRevRAHRVETGPFEYMRIHWRYDTEPE--- 184
                     78*********************************86644445555555555555555555555555555579******************9... PP

                     CEEEEEEEEEEEE-SSCHHHHHHHHHH CS
  Polyketide_cyc  92 gtrtkvalevdfkfaspllgalvgqva 118
                     gtr++++ ++ + ++ pl  a +   +
      KIR61733.1 185 GTRMTWVQDFAMHPSAPLDNAGMTERI 211
                     ************999998877665555 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.3   1.4e-10   8.1e-07       2      60 ..      12      73 ..      11      79 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.4e-10
  PP-binding  2 klrelvaevlgvpleei..dpdtdlfdlGlDSllavellaaleeefgveiplsdl.fehptl 60
                +++e++   +g+++e+   +p+++l dlG+DSl+++el a + +++ v++p +   +    +
  KIR61733.1 12 EITEILVAHCGLDTEAAarEPEASLEDLGMDSLALLELSAVVADRYRVRLPEDAArLSIAEV 73
                67889999999988885558*******************************99764434333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1716.56
//
Query:       KIR61734.1  [L=143]
Description: cupin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-20   71.3   0.3    5.9e-20   70.8   0.3    1.2  1  Cupin_2          Cupin domain
    3.2e-07   30.3   0.0    4.4e-07   29.9   0.0    1.1  1  AraC_binding     AraC-like ligand binding domain
    3.1e-06   27.2   0.0    4.2e-06   26.7   0.0    1.1  1  MannoseP_isomer  Mannose-6-phosphate isomerase
    4.4e-05   23.2   0.0    5.3e-05   22.9   0.0    1.1  1  DMSP_lyase       Dimethlysulfonioproprionate lyase
    0.00019   21.2   0.3    0.00028   20.6   0.3    1.4  1  Cupin_6          Cupin
     0.0078   15.8   0.1      0.021   14.4   0.1    1.6  1  Cupin_1          Cupin
  ------ inclusion threshold ------
      0.015   15.5   0.0      0.018   15.2   0.0    1.2  1  CENP-C_C         Mif2/CENP-C like
       0.13   12.6   0.0       0.19   12.1   0.0    1.2  1  Pirin_C          Pirin C-terminal cupin domain
       0.18   11.4   0.0        0.5   10.0   0.0    1.6  1  Auxin_BP         Auxin binding protein


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.3     3e-23   5.9e-20       2      68 ..      51     117 ..      50     120 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 3e-23
                 EEEEETTEEEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEE CS
     Cupin_2   2 lvelppGesapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparll 68 
                 +  l+pGe + +h+Hp+++ef+yV +G +++ +d+++v++ aG+++++p +++Hr+rNtg+epa+++
  KIR61734.1  51 VAALAPGERIAEHYHPYSEEFLYVARGAITVDLDDRPVPVVAGEALFVPVNVRHRLRNTGEEPAEVV 117
                 5679************************************************************997 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   2.2e-10   4.4e-07       6      69 ..      50     114 ..      46     120 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 2.2e-10
                   EEETTSTT-SEEEETT-.SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEE CS
  AraC_binding   6 gieagypdhsfpphvhd.eyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgw 69 
                   g +a +p+++ ++h h+   ++ yv++G+ ++ l++r + + +G+ +++p ++ H+++  +e++ 
    KIR61734.1  50 GVAALAPGERIAEHYHPySEEFLYVARGAITVDLDDRPVPVVAGEALFVPVNVRHRLRNTGEEPA 114
                   667778999********99***************************************9998875 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.1e-09   4.2e-06      70     133 ..      54     117 ..      45     120 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.1e-09
  MannoseP_isomer  70 vkPgeklslqkhhhraehWvvvkGtakvtvddevlllkenestyiplgaihrlenpGkipleli 133
                      + Pge+++ + h +  e   v +G+  v  dd+ + + + e  ++p+++ hrl n G+ p e++
       KIR61734.1  54 LAPGERIAEHYHPYSEEFLYVARGAITVDLDDRPVPVVAGEALFVPVNVRHRLRNTGEEPAEVV 117
                      689****9999999999999**************************************999886 PP

>> DMSP_lyase  Dimethlysulfonioproprionate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.7e-08   5.3e-05      82     160 ..      35     113 ..      17     116 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.7e-08
  DMSP_lyase  82 eivGprglekrddvalGlvllaPkvrYPdHhhaaeelYlvlsggaefrqgeaewlsrgiGevifnepgikhamrsa.eeP 160
                 +++Gpr   + +   +G+  laP  r  +H h++ e +l +  ga+    +   +++ +Ge +f + +++h++r + eeP
  KIR61734.1  35 VLLGPRTVGS-TSGFMGVAALAPGERIAEHYHPYSEEFLYVARGAITVDLDDRPVPVVAGEALFVPVNVRHRLRNTgEEP 113
                 5788887554.55578******************999999999988777788889******************9765888 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.3   1.4e-07   0.00028      34      90 ..      69     123 ..      40     142 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.4e-07
     Cupin_6  34 lalhvvlrGscwlidpasgepvrLsagdvvllpggephvladspgtaplavieal.ge 90 
                  +++ v+rG++++ +++  +pv + ag+++++p   +h+l  ++g++p++v+ +l   
  KIR61734.1  69 EEFLYVARGAITVDLDD--RPVPVVAGEALFVPVNVRHRL-RNTGEEPAEVVFHLgPL 123
                 579***********888..8********************.55555666666333122 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1     1e-05     0.021      38     113 ..      52     120 ..      40     129 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
                 EEE.TTEEEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEE.EETTEEEEE-TT-EEEEEEESSSSEEEEEEE CS
     Cupin_1  38 vdlepgglllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkk.lreGdvfvvPaglvhfqynsgdepavaivvf 113
                  +l+pg  ++ hyhp ++e +yv  G  +   v  ++     + + + +G+++ vP ++ h   n+g+epa +++ +
  KIR61734.1  52 AALAPGERIAEHYHPYSEEFLYVARGAIT---VDLDD-----RPVpVVAGEALFVPVNVRHRLRNTGEEPAEVVFHL 120
                 55677777788***************999...55453.....3346*********************9999888766 PP

>> CENP-C_C  Mif2/CENP-C like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   9.3e-06     0.018      37      83 ..      72     118 ..      45     120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9.3e-06
                 EEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE CS
    CENP-C_C  37 FyViqGrvevtvsktsfvigkgsvFqvPagneysieNklnkeaklfF 83 
                  yV +G++ v++ +    ++ g    vP      ++N++++ a++ F
  KIR61734.1  72 LYVARGAITVDLDDRPVPVVAGEALFVPVNVRHRLRNTGEEPAEVVF 118
                 69****************************************99988 PP

>> Pirin_C  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.8e-05      0.19       5      41 ..      53      91 ..      50     124 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.8e-05
                EE-TT-EEEEE--TT-EEEEEEEES-EEESSTT..EEE- CS
     Pirin_C  5 tleagaelelplpegleaavyvleGelevgger..seie 41
                 l++g++++    ++ e ++yv +G ++v+ ++   ++ 
  KIR61734.1 53 ALAPGERIAEHYHPYSEEFLYVARGAITVDLDDrpVPVV 91
                699**************************9988553333 PP

>> Auxin_BP  Auxin binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00025       0.5      50     117 ..      53     112 ..      43     123 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00025
                 EE-TT-B--EEEESS-EEE.EEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SS CS
    Auxin_BP  50 tlapgsrtpihrhsceevf.vvlkgkgtlylasssskypgkpqelpifanstlsipvndahqvkntgeh 117
                 +lapg+r   h h   e f  v +g  t+ l         + + +p+ a  +l +pvn  h+++ntge 
  KIR61734.1  53 ALAPGERIAEHYHPYSEEFlYVARGAITVDL---------DDRPVPVVAGEALFVPVNVRHRLRNTGEE 112
                 6788888888888754444045555555544.........44558999999***************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:01.06
# Mc/sec: 408.61
//
Query:       KIR61735.1  [L=105]
Description: antibiotic biosynthesis monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-13   51.2   0.2    1.4e-13   50.8   0.2    1.2  1  ABM       Antibiotic biosynthesis monooxygenase


Domain annotation for each model (and alignments):
>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.2   7.7e-18   1.4e-13       4      76 ..       8      80 ..       6      82 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 7.7e-18
                EEEEEEESTTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEETSTTEEEEEEEESSHHHHHHHHTSHHHHHHH CS
         ABM  4 viaeirvkpgqaeafldafaeavesllaeepGclgyellrstedpdevvvieeWeseaaleahlksphfkaah 76
                v+  +rv+  +  +fl+a++++   + + +pG+l  +++rs+ dp+++++++eW + aa+ea+ +sp++++ +
  KIR61735.1  8 VVFLVRVPQQRTGDFLRAYEAIRHLVAEGVPGHLVDQVCRSSADPEQWLITSEWVNLAAFEAWERSPEHRDLV 80
                788899***************************************************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 738.02
//
Query:       KIR61736.1  [L=464]
Description: AMP-dependent synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.8e-30  103.5   1.9    5.3e-29  101.1   1.9    2.1  1  AMP-binding    AMP-binding enzyme
    6.1e-12   46.4   0.3    3.7e-11   43.8   0.1    2.5  2  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.1   1.9   5.9e-33   5.3e-29      30     422 ..      43     375 ..      39     376 .. 0.81

  Alignments for each domain:
  == domain 1  score: 101.1 bits;  conditional E-value: 5.9e-33
                  HHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCCHHHHHHHHSCC-EECEEEEES CS
  AMP-binding  30 ervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdselleklleaaakleavklvivld 127
                  + v ++ a L+ +G+++g   a+ lp+s+ +vv lla+++ Ga ++ l+ +lt +e++ +l+   ++v++        + +++  a+l     +i +d
   KIR61736.1  43 RLVAEAQARLTGAGLRPGGAAALRLPPSLAYVVNLLATWRTGAQAILLDHRLTDHEVQGALARLTPQVVV--------APVRSGGAAL-----KIFVD 127
                  5666667889988*********************************************************........2355555543.....77777 PP

                  CCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHC.SC.CTTT-EEEESS-TTSCHHHHHHHHH CS
  AMP-binding 128 adellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletr.fk.lkeddvvlsilplahifglilelll 223
                    e      + + +            +++  +  a+i+ +SG+TG  K +  s ++lva v+ +    r ++ + ++++++   +++h++gl+ +ll+
   KIR61736.1 128 VTE---G--VTAYS------------DRPAGSPHAVIQLSSGSTGPSKVIGRSAASLVAEVRRYT---RiDGvALPGERIILLPSMVHVLGLVGGLLY 205
                  322...1..22111............123344569****************************73...22332347****************999999 PP

                  HHHTT-EEEE-TTCGCCH.HHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGG CS
  AMP-binding 224 allsGatvvllpkdaald.pklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggeplspellrffralfgeevlegYGlTEt 320
                   l++  t+v   +d   + +++l++  ++  + ++ gvP  +  l++ ++         l+  + + +gge ++p+++ +f ++fg ++ ++YG+TE 
   KIR61736.1 206 GLHAHVTLVP--PDRL-SgDAVLAAIAADDTPATVLGVPFHIGLLASTRPTG------PLPQFKRMTTGGELVPPAVVNAFVDRFGVPLGNMYGMTEV 294
                  9996665555..5544.4378888999999999********99999976666......89**99999******************************* PP

                  SSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT..-HHHHHHHEEETCCEEEEEEEEEEETT.SEEEEEEE CS
  AMP-binding 321 tgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlk..kpeataeafdsegrwlrTGDlgrlded.GyleivgR 415
                  +++ t + + +++   +s+  p pg  + + + +         +Gel+v+ p   + Y +  +p++ a      ++wl+T D g++d+d G + + gR
   KIR61736.1 295 GVIGT-DLHGWHR---PSIA-PAPG--ITVRESA---------TGELWVSCPD--SPYVGlsDPDRWA------DGWLHTRDAGTVDPDtGLVTVRGR 368
                  *****.7777773...4443.4466..6666665.........6******995..6676621444433......36************99******** PP

                  CCCEEEE CS
  AMP-binding 416 kkdlikl 422
                  ++ ++ +
   KIR61736.1 369 LDSQVSV 375
                  ***9976 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.57   5.1e+03      31      61 ..     145     184 ..     109     193 .. 0.60
   2 !   43.8   0.1   4.1e-15   3.7e-11       1      76 []     384     451 ..     384     451 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.57
                    EEEEE---...---.....HHHHHHHHHHH..HT-TTTS-S CS
  AMP-binding_C  31 afVvlkdg...sea.....leeeLkahvrk..elgpyavpk 61 
                    a++ l++g   + +      ++ L+a vr+  ++  +a p 
     KIR61736.1 145 AVIQLSSGstgP-SkvigrSAASLVAEVRRytRIDGVALPG 184
                    444444332211.1244555666777776655666666666 PP

  == domain 2  score: 43.8 bits;  conditional E-value: 4.1e-15
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    evE++l+  p+Va a+Vv +        + a+V + dg+ + ee L++ ++++l++y++p+ ++++d+lp+t++GK
     KIR61736.1 384 EVEATLAGLPGVAAAVVVHDG------DITAYVQP-DGP-LSEEVLEKLLAERLAAYKRPRVLHLLDRLPRTTTGK 451
                    8*****************333......57******.474.3479999999*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3184.19
//
Query:       KIR61737.1  [L=221]
Description: hypothetical protein TK50_29870 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-13   51.2   0.0    1.9e-13   50.5   0.0    1.3  1  ACPS      4'-phosphopantetheinyl transferase superfamily
  ------ inclusion threshold ------
      0.066   13.3   0.2       0.14   12.3   0.2    1.5  1  4PPT_N    4'-phosphopantetheinyl transferase N-terminal domai


Domain annotation for each model (and alignments):
>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   2.1e-17   1.9e-13       1      68 [.      86     147 ..      86     156 .. 0.90

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 2.1e-17
                 EEEEEEEEHHHHH.HHH-----HHHHHS-HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTS-SSS CS
        ACPS   1 gvGiDieklsrlrkrvkrrgakilkrifteeErkllkssdeearaelfarlWaaKEAllKalgpglrk 68 
                 gvG+D+e   r r+    ++ ++++r++ ++E ++l+ ++   r+e+f++lW+aKEA+ Kalg+glr 
  KIR61737.1  86 GVGVDVE---RRREL---PALALARRWYAPQEAAWLRGRPPGHRVEAFLLLWTAKEAVGKALGRGLRD 147
                 79*****...55544...888*********************************************65 PP

>> 4PPT_N  4'-phosphopantetheinyl transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   1.5e-05      0.14      23      67 ..      26      81 ..      25      82 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.5e-05
      4PPT_N 23 cAraalarlg.......leavpllsgerraPlwpag....lvgSIsHtdglaaAav 67
                +Ar++l+r g        ++ ++ ++++++Pl +ag    l +S+sHt g+ ++a+
  KIR61737.1 26 AARRLLRRAGgtllgraEAEIRVGRDAAGRPLVDAGdaveLPVSVSHTGGVVVVAA 81
                455555555434434323346888899*******875333457********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      132  (0.00736237); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1642.95
//
Query:       KIR61738.1  [L=88]
Description: phosphopantetheine-binding-protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00025   21.3   0.6    0.00032   21.0   0.6    1.2  1  PP-binding  Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.6   1.8e-08   0.00032       2      64 ..       4      73 ..       3      76 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.8e-08
  PP-binding  2 klrelvaevlgv...pleeidpdtdlfdlG..lDSllavellaaleeefgveiplsdl..fehptlaela 64
                ++r+ v ++l+    +++ id+dt+l   G  l Sl++++l++++e+++g+++ +++   +++ t++e++
  KIR61738.1  4 EVRAFVISQLDDmnyDVDGIDDDTTLGPAGvdLESLALADLAVRVEDRYGLKFADDESekLALMTVGEFT 73
                6777777777766779999*******96563377*******************99976555677777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 682.75
//
Query:       KIR61739.1  [L=81]
Description: hypothetical protein TK50_29880 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 560.47
//
Query:       KIR61740.1  [L=364]
Description: 3-ketoacyl-ACP synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-29  100.7   0.0    1.2e-28   99.4   0.0    1.7  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
      5e-15   55.8  15.8    2.8e-12   46.8  13.0    3.4  3  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
  ------ inclusion threshold ------
        3.4    7.0   5.9        3.1    7.1   0.9    2.5  3  Thiolase_N       Thiolase, N-terminal domain


Domain annotation for each model (and alignments):
>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.0   2.1e-32   1.2e-28       1     115 [.     207     319 ..     207     321 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 2.1e-32
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      +a + g++  +d++h   ++p+g+++ara+ +al++ag++ped++yv+a++tgt   D++E++al+ ++ge+a  ++++v+S+K++ GH++ A+
       KIR61740.1 207 LASVLGWGRAGDAYHPCQPDPQGRGLARALGAALRRAGLRPEDIGYVNANATGTGYSDAAEAAALRLAWGEHA--HRVPVSSTKALHGHALEAS 298
                      58999******99***********************************************************9..78***************** PP

                      HHHHHHHHHHHHHHTEE--BT CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptl 115
                      G++el+ +vla++hg++p ++
       KIR61740.1 299 GLLELVVTVLAVRHGKLPVNA 319
                      ******************876 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0    0.0077        46       3      46 ..       6      47 ..       4      67 .. 0.85
   2 !   46.8  13.0   4.6e-16   2.8e-12     153     252 ..     100     198 ..      51     199 .. 0.86
   3 !    4.3   0.0    0.0041        25      86     133 ..     226     272 ..     219     295 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0077
                   -EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTS CS
  ketoacyl-synt  3 pvaivGmgarfPggndveefwelLlegrdaiselpadrwdadkl 46
                   pv i+G+ a+ + g+++++    +l+g  a++++   r+d+++ 
     KIR61740.1  6 PVRITGVHALSALGRGADAQLAGVLAGAPAFRPVG--RFDTSAR 47
                   899*****************************888..7888776 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 4.6e-16
                    HHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEE CS
  ketoacyl-synt 153 viagrisyalglrGpsvtvdtACsSslvavhaavqslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLk 248
                     +ag ++ ++gl G+s + ++AC S+ +av+ a   + +g++d +++ +   l++p ++a+f+a ++l++dg +++f+++  G  lG+Gv+avvL+
     KIR61740.1 100 ALAGELARRCGLAGASRVYTSACVSASTAVADAAALIGRGDVDRIVVAAGY-LVEPDQYALFDAGRALATDGAVRPFSAGRRGLLLGDGVAAVVLE 194
                    589***********************99999999*********99998888.99****************************************** PP

                    ECHH CS
  ketoacyl-synt 249 rled 252
                    +++ 
     KIR61740.1 195 SAAA 198
                    9865 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0041
                    -HHHHHHHHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHH CS
  ketoacyl-synt  86 dpqqrllleaawealedagltpeeldgsrvgvfiGvgagdyaalaald 133
                    dpq r l +a   al++agl pe++   + ++ +G+g++d a+ aal+
     KIR61740.1 226 DPQGRGLARALGAALRRAGLRPEDIGYVN-ANATGTGYSDAAEAAALR 272
                    9999******************9985554.777888888665544444 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.9   0.00052       3.1      82     111 ..     119     149 ..      90     152 .. 0.76
   2 ?   -3.6   0.2      0.92   5.5e+03     248     258 ..     185     195 ..     183     196 .. 0.82
   3 ?    1.9   0.0      0.02   1.2e+02      28      71 ..     233     276 ..     231     296 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00052
                 EHGGGHHHHHHHHHHHHHHTTSHS.EEEEEE CS
  Thiolase_N  82 nkvcsSglkavalaaqsiaagead.vvvagG 111
                 + +c S+ +ava+aa  i  g++d +vva G
  KIR61740.1 119 TSACVSASTAVADAAALIGRGDVDrIVVAAG 149
                 689********************94555555 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.92
                 EEEEEEEEEEE CS
  Thiolase_N 248 sDGaaavllms 258
                  DG aav+l s
  KIR61740.1 185 GDGVAAVVLES 195
                 6******9965 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTT CS
  Thiolase_N  28 aealkallekagvdpeevdevivGnvlqagegqniarqaalkag 71 
                 a+al a+l +ag+ pe++ +v      ++ +++++a ++ l+ g
  KIR61740.1 233 ARALGAALRRAGLRPEDIGYVNANATGTGYSDAAEAAALRLAWG 276
                 78999***************988877777777777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2613.25
//
Query:       KIR61741.1  [L=538]
Description: AMP-dependent synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-55  186.3   0.0      1e-54  185.8   0.0    1.2  1  AMP-binding    AMP-binding enzyme
  ------ inclusion threshold ------
      0.072   14.1   2.1       0.17   12.8   2.1    1.7  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.8   0.0   1.1e-58     1e-54      20     422 ..      49     434 ..      32     435 .. 0.81

  Alignments for each domain:
  == domain 1  score: 185.8 bits;  conditional E-value: 1.1e-58
                  TEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCCHHHHHHHHSCC CS
  AMP-binding  20 gqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdselleklleaaakl 117
                   + lT ++lderv + Aa+Lr++Gvk+ d Va+++   +++v+++la+ ++Ga+++ +n +l++e  a  ++  +   ++   d++   +ll+ ++  
   KIR61741.1  49 ERPLTLGQLDERVAARAAWLRARGVKPRDPVAVWATAAADMVLSFLALTRLGAIPALMNGRLRPEIAAEYIRRLRGAGVL--ADAAH-TELLAGHD-- 141
                  5679*****************99******************************************999999999888888..33333.33333332.. PP

                  -EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH.HHHCSCCTTT-EEEESS-TTSC CS
  AMP-binding 118 eavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk.letrfklkeddvvlsilplahi 214
                      + ++          ++++ ++++++a+    + + +pdd+++i  TSGTTG PK+V +sh++l a+++ l  +++ ++   + ++l  lp  h 
   KIR61741.1 142 --LGAPLLGT--------PADAGTGDPAAAG---AHYRHHPDDPIVITHTSGTTGVPKAVLHSHASLFAATRHLLsMPQAQG---TRRILNALPAPHT 223
                  ..23333222........2222222222222...233469******************************999877877665...58*********** PP

                  HHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC.. CS
  AMP-binding 215 fglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sgalkaakkakdlsslrlvllggeplspellrffralfge.. 309
                  + + l ++ al + a++ ll+       +++l++i+++++  ++g    +  l++ + + +      dl s+rl +  g+   +  +r++ a++ +  
   KIR61741.1 224 ATV-LMVNQALGNRAEMFLLSDQGG---ERVLDAIQRWRPDGVFGFSVTWAELARfDLSAY------DLDSVRLWFNTGDCSHEPHVRRLVAVGSRdt 311
                  **8.***************996554...6789*********************99664444......8999999775666666666666666655566 PP

                  ............EEEEEEEEGGGSSECEECHCTTTCTSTTS-.BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEETCC CS
  AMP-binding 310 ............evlegYGlTEttgvvtvlpleedkkklgsv.GkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafdsegr 394
                               +++g G +E+++ ++++++  d+ + g++ G+p   ++v+++D + g+++p+g++G l + +p++++gY+++ + t  +f    +
   KIR61741.1 312 vtrqgvvrvpgsVFIDGLGSSEMGHSMFHITHTADTDRYGRCvGRPYQFTKVAVLDAD-GNELPPGQVGFLGIDSPSLFRGYWND-SVTTYRFR-LRG 406
                  66666666666889*************6644444444555554**************9.9***********************99.88888886.445 PP

                  EEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 395 wlrTGDlgrldedGyleivgRkkdlikl 422
                  w+ TGDl++ d+dG+++ ++R+ d + +
   KIR61741.1 407 WYLTGDLVYADADGRYYHLDRAVDSVEV 434
                  *********************9887765 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.1   1.9e-05      0.17       3      76 .]     447     522 ..     446     522 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.9e-05
                    HHHHHSSTTEEEEEEE-----TTS---EEEEEE..------...HHHHHHHHHHHHT-TTTS-SEEE.E-.S---B-TTS- CS
  AMP-binding_C   3 EsalvshpaVaeaaVvGvpdevkGealvafVvl..kdgsea...leeeLkahvrkelgpyavpkkvv.fv.delpktrsGK 76 
                    E +l+++p+V ++ Vv v+++    ++v  V l  ++g ++     e+++a + + +g+    ++vv +  +++p t +GK
     KIR61741.1 447 ERVLAACPDVTDCTVVIVKED---DRVVTDVLLelAAGADPgvdRTEAVRAALGADVGAT--LRRVVpVRsEDIPVTVTGK 522
                    889*************99999...888888887223443224456788888888888875..66677344468**999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3582.54
//
Query:       KIR61742.1  [L=422]
Description: beta-ketoacyl synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-45  154.6   2.7    5.8e-45  153.8   2.7    1.3  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    5.8e-37  126.3   0.5    1.5e-36  125.0   0.5    1.7  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    4.9e-06   26.1   2.2    4.9e-06   26.1   2.2    2.2  3  Thiolase_N       Thiolase, N-terminal domain
  ------ inclusion threshold ------
      0.053   14.0   0.0       0.12   12.8   0.0    1.6  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
       0.16   11.9   2.3        3.7    7.5   0.3    2.7  2  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.8   2.7   1.6e-48   5.8e-45       6     253 .]       5     244 ..       3     244 .. 0.86

  Alignments for each domain:
  == domain 1  score: 153.8 bits;  conditional E-value: 1.6e-48
                    EEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..STTEGGTTSTHHHHHHHCTS-HHHHHHHHHHHHHHH CS
  ketoacyl-synt   6 ivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfldvddfdpeffgispreaeamdpqqrllleaaweale 101
                    i+Gmg ++P g+++ e+ ++Ll+gr++  + p+d+         + +aag  ++          +dp++    p+  + +d+   l+l aa++al+
     KIR61742.1   5 ITGMGLLTPAGRGTGETLDALLAGRSGLVRPPQDHPAH-----GSLEAAGLLPD----------IDPRTVASGPE-TRVLDRIVVLALLAAADALA 84 
                    9****************************999543222.....23456666666..........9****999888.99****************** PP

                    HHTS-HHTC.TTGGEEEEEEESST.HH.HHHHHHHHHTT.GGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHHTTS CS
  ketoacyl-synt 102 dagltpeel.dgsrvgvfiGvgag.dy.aalaaldedgs.evkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslrsge 193
                    dag++  +  d  r+gv++G   g  + +  ++l ++++ +  +sp+ ++ +l+n+ a+ri++a+g+rG s +v tAC+S++ av+ av+ +r+ge
     KIR61742.1  85 DAGIEVGRDvDPARIGVIVGGVGGmATlE-RQVLARAERgRAAVSPYLLTGILPNMPAARIAIAHGIRGYSSSVGTACASGAQAVADAVRLIRAGE 179
                    ****6655438888******998863333.3344434434789999555556******************************************** PP

                    -SEEEEEEEE---SHHHHHHHHHTTBB-TT..SGGGTTBTTB...-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 194 advalaGGvellltpeavagfsaagllspd..grckafdpka...dGfvlGEGvGavvLkrleda 253
                    adv+++G++e++l p     f +a++l++   ++ +a++p++   +Gfvl+EG++++vL+r+e+a
     KIR61742.1 180 ADVVVCGASEAPLFPTFADTFGNARALARGwaDPAEASRPFDarrNGFVLAEGAALLVLERAEHA 244
                    ******************************999988888888888*****************987 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   0.5   4.1e-40   1.5e-36       1     117 [.     252     364 ..     252     365 .. 0.99

  Alignments for each domain:
  == domain 1  score: 125.0 bits;  conditional E-value: 4.1e-40
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      ya+++g+++n d++h ++++p+g+++a+++++ala   v++ dv+yv+ahgtgt+lgD +E++al++vfge++    ++v+S+K+++GHl++A+
       KIR61742.1 252 YAEVAGYGANTDAHHPTAPRPDGAGAAECMRQALAGGAVTAGDVGYVNAHGTGTKLGDIAEITALTDVFGEGR----VPVSSTKALTGHLLGAS 341
                      8**********************************************************************99....***************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      Gv+e+++++lal +g +ppt nl
       KIR61742.1 342 GVLEAAATALALGRGLLPPTWNL 364
                      ********************998 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.17   6.2e+02      26      71 ..      74     121 ..      68     128 .. 0.79
   2 !   26.1   2.2   1.4e-09   4.9e-06      61     113 ..     139     189 ..     130     190 .. 0.89
   3 ?   -2.8   0.1      0.89   3.2e+03     236     248 ..     287     299 ..     279     300 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHTS-GG.GCCEEEEEHSSCTTSTSC.HHHHHHHHTT CS
  Thiolase_N  26 Llaealkallekagvdpe.evdevivGnvlqagegqn.iarqaalkag 71 
                 L+  a+ ++l++ag++   +vd   +G ++ ++ g + ++rq+  +a+
  KIR61742.1  74 LALLAAADALADAGIEVGrDVDPARIGVIVGGVGGMAtLERQVLARAE 121
                 5666788999****9986699999999999996666559999887765 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 1.4e-09
                 CHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEE CS
  Thiolase_N  61 niarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvE 113
                 ++a  +a++ gi    +++ v  +c+Sg++ava+a++ i+ageadvvv+g  E
  KIR61742.1 139 MPAARIAIAHGI--RGYSSSVGTACASGAQAVADAVRLIRAGEADVVVCGASE 189
                 578888899999..88999*****************************99776 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.89
                 TSS-BTTSB--BE CS
  Thiolase_N 236 eGtvtAgnasqis 248
                  G vtAg++ +++
  KIR61742.1 287 GGAVTAGDVGYVN 299
                 499****998886 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.5e-05      0.12      29      47 ..     390     408 ..     376     419 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.5e-05
  KAsynt_C_assoc  29 vNsfGfGGsnvHviLksnk 47 
                      NsfGfGG nv ++L+   
      KIR61742.1 390 TNSFGFGGQNVSLLLRRTA 408
                     6**************9865 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.3     0.001       3.7       4      35 ..     158     188 ..     156     194 .. 0.86
   2 ?    3.1   0.1     0.023        83      42      67 ..     221     244 ..     203     253 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.001
                  E-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEE CS
  ACP_syn_III   4 naaCsgfvyalsvAdaliesgaakrvLvigae 35 
                   +aC++  +a++ A +li++g+a  v+v+ga 
   KIR61742.1 158 GTACASGAQAVADAVRLIRAGEA-DVVVCGAS 188
                  579******************66.57788875 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.023
                  -TTTHHHHTTB-EEEEEEEEEEESSS CS
  ACP_syn_III  42 DwkdrstavlfGDGAgAvvleaseee 67 
                  D   r++ ++++ GA+ +vle+ e+ 
   KIR61742.1 221 DA--RRNGFVLAEGAALLVLERAEHA 244
                  33..89999************98644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2578.25
//
Query:       KIR61743.1  [L=371]
Description: 4-hydroxyphenylpyruvate dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-24   86.8   0.1    2.5e-14   53.6   0.0    2.2  2  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    6.7e-19   68.2   0.2    2.2e-11   44.0   0.0    2.4  2  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
    1.1e-07   32.1   0.0      4e-07   30.3   0.0    1.8  2  Glyoxalase_5  Hydroxyphenylpyruvate dioxygenase, HPPD, N-term
    3.2e-07   30.6   5.6     0.0054   16.9   0.3    3.2  2  Glyoxalase_3  Glyoxalase-like domain
  ------ inclusion threshold ------
       0.54   11.1   7.2       0.83   10.5   0.4    2.8  3  Glyoxalase_6  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   5.1e-11   1.8e-07       2     105 ..       6     107 ..       5     121 .. 0.91
   2 !   53.6   0.0     7e-18   2.5e-14       2     128 .]     165     312 ..     164     312 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 5.1e-11
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEEST..EEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTT CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdnteet..eglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeag 98 
                 idh+ l+vgd+ +++ ++  ++Gf+l  + +  +et   g+r+  ++  + +  l++  +++++a+ +  ++ ++ ++a++al+v+d + a+ +l  +g
  KIR61743.1   6 IDHIELFVGDARQAAFYFGTAVGFRLAGQGG--PETglAGQRSLLLRQADIRMVLTSGLTAGHRASTY--VQRHGDGIAVVALEVDDAAGAYAELVGRG 100
                 9******************************..666689999999***********************..55579************************ PP

                 GEEEEEE CS
  Glyoxalase  99 vkvvaep 105
                    v++p
  KIR61743.1 101 ATPVTPP 107
                 8777766 PP

  == domain 2  score: 53.6 bits;  conditional E-value: 7e-18
                 EEEEE..EEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCC...BSCTSEEEEEEEEEHCHHHHHHHHHH CS
  Glyoxalase   2 idhva..llvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkk...ieetvhhvafialdvedvgkaldrlk 95 
                 idh+a  ++ g+l+++++ Y++v+Gf  +  ++ + +++ ++++++++ +g+++lvl e++ + ++++     +e+ +++v+++ l ++d+  a+  l+
  KIR61743.1 165 IDHLAicVPPGQLDATVAHYERVFGFAQIFTEHVEVAGQAMNSTVVQSPSGRVTLVLLEPDRSHRPGQIDaflTEHAGAGVQHLGLRTDDIVTAVGALR 263
                 899994455579*********************99999******************************885544459********************** PP

                 HTTGEEEEEEECHHCTEEEEE................EEEETTSEEEEE CS
  Glyoxalase  96 eagvkvvaepgrhyfgalysf................yfrDpdGillei 128
                 ++gv++ ++pg +y +    +                + rD++G ll+i
  KIR61743.1 264 SRGVRFAGTPGAYYDDLERRVgpvdapldrlrelsilVDRDHGGQLLQI 312
                 *************999888779999999999999999999999999886 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   3.9e-08   0.00014       1     104 [.       7     114 ..       7     119 .. 0.83
   2 !   44.0   0.0     6e-15   2.2e-11       1      96 [.     166     272 ..     166     284 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.9e-08
                   EEEEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETTEEEEEEEESSTT....-THHHTS-EEEEEEEEES-HHHHHHHHCTTTEEE CS
  Glyoxalase_4   1 dQigivVeDleaavarfsallGvgpwqryrdepqevdlafallgsgsvqieLieplegp....eflaehgeglhhlaywvddldaavarleeqGfev 93 
                   d+i++ V D  +a+ +f++++G++   +  +e   +    +ll++++++  L + l       + +++hg g+  +a++vdd   a a+l  +G+++
    KIR61743.1   7 DHIELFVGDARQAAFYFGTAVGFRLAGQGGPETGLAGQRSLLLRQADIRMVLTSGLTAGhrasTYVQRHGDGIAVVALEVDDAAGAYAELVGRGATP 103
                   69**********************99999999988888888888877777777766644455499999***************************99 PP

                   EEEEE-GGGTT CS
  Glyoxalase_4  94 vqkgvragaag 104
                   v   v  ++a+
    KIR61743.1 104 VTPPVTFTGAD 114
                   87665555445 PP

  == domain 2  score: 44.0 bits;  conditional E-value: 6e-15
                   EEEEEE-S..-HHHHHHHHHH.TT-E..ESS--E.EETTTTEEEEEEEETTEEEEEEEESSTT......-THHH.TS-EEEEEEEEES-HHHHHHHH CS
  Glyoxalase_4   1 dQigivVe..DleaavarfsallGvg..pwqryrdepqevdlafallgsgsvqieLieplegp......eflae.hgeglhhlaywvddldaavarl 86 
                   d+++i V+   l+a+va++++++G+   +++++++  q ++  ++++ sg v + L ep++         fl e  g+g++hl++++dd+  av +l
    KIR61743.1 166 DHLAICVPpgQLDATVAHYERVFGFAqiFTEHVEVAGQAMNSTVVQSPSGRVTLVLLEPDRSHrpgqidAFLTEhAGAGVQHLGLRTDDIVTAVGAL 262
                   68999999889**************94445777788899*********************97767677788877899******************** PP

                   CTTTEEEEEE CS
  Glyoxalase_4  87 eeqGfevvqk 96 
                   +++G++++  
    KIR61743.1 263 RSRGVRFAGT 272
                   ******9854 PP

>> Glyoxalase_5  Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.1e-10     4e-07      45     127 ..      48     136 ..      41     145 .. 0.84
   2 ?   -2.1   0.0       1.1   3.9e+03      61      89 ..     231     260 ..     203     273 .. 0.72

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.1e-10
  Glyoxalase_5  45 lyrqGginfilneepds..aaakfarehGpsacalafrvkdakkayeralekGakpveke....tgvmelkiPaikGiGgsllylvdry 127
                   l rq +i ++l +  ++  +a+++ + hG +++ +a+ v da+ ay +++ +Ga+pv+ +        e+    + G G+ l  lv+r 
    KIR61743.1  48 LLRQADIRMVLTSGLTAghRASTYVQRHGDGIAVVALEVDDAAGAYAELVGRGATPVTPPvtftGADAEVVTAEVAGFGDVLHRLVERR 136
                   78********998755422899*********************************99876322133568888999*****999999985 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.1
  Glyoxalase_5  61 saaakfareh.Gpsacalafrvkdakkaye 89 
                   +++  f +eh G+++  l++r  d  +a  
    KIR61743.1 231 GQIDAFLTEHaGAGVQHLGLRTDDIVTAVG 260
                   455667666657888889999888776655 PP

>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.9   1.5e-05     0.053       1     115 [.       6     116 ..       6     156 .. 0.78
   2 !   16.9   0.3   1.5e-06    0.0054       1     105 [.     165     272 ..     165     286 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.5e-05
  Glyoxalase_3   1 lDHvvlavpdleeaaarfarrlGftvtpggehpglgtaNalvmfgdgYlEllavdpeapaperprlfgldrlakgeglhtlalrtddidataarlra 97 
                   +DH+ l+v+d  +aa +f ++ Gf+++  g  + + ++ + + +++  + ++     ++    +++   +r  +g+g+  +al++dd++ ++a+l  
    KIR61743.1   6 IDHIELFVGDARQAAFYFGTAVGFRLAGQGGPETGLAGQRSLLLRQADIRMVLTSGLTAG--HRASTYVQR--HGDGIAVVALEVDDAAGAYAELVG 98 
                   7**************************888888878888888888886666654333333..333333344..79*********************9 PP

  Glyoxalase_3  98 aGvdeagrrvrpdggdlr 115
                   +G ++   +v+  g d++
    KIR61743.1  99 RGATPVTPPVTFTGADAE 116
                   997777777788876654 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.5e-06
  Glyoxalase_3   1 lDHvvlavp..dleeaaarfarrlGftvt..pggehpglgtaNalvmf.gdgYlEllavdpeapaperp.rlfgldrlakgeglhtlalrtddidat 91 
                   +DH+ ++vp  +l++++a+++r  Gf  +  ++ e +g  + N  v+  + g + l+  +p++  ++ +  +f  ++  +g g+ +l lrtddi  +
    KIR61743.1 165 IDHLAICVPpgQLDATVAHYERVFGFAQIftEHVEVAG-QAMNSTVVQsPSGRVTLVLLEPDRSHRPGQiDAFLTEH--AGAGVQHLGLRTDDIVTA 258
                   7*************************966336666666.55555555536667777777776664333314564444..69**************** PP

  Glyoxalase_3  92 aarlraaGvdeagr 105
                   + +lr++Gv  ag+
    KIR61743.1 259 VGALRSRGVRFAGT 272
                   ********974444 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00023      0.83       8      94 ..      15     114 ..       8     125 .. 0.68
   2 ?    4.1   0.1     0.022        78       8      82 ..     176     268 ..     169     279 .. 0.69
   3 ?   -2.5   0.2       2.5     9e+03      70      83 ..     346     359 ..     340     366 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00023
  Glyoxalase_6   8 dpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpe....................paknrvHldlavedldaevarlvalGArvl 84 
                   d++++a ++ +a g++++ +      pe++ +   ++ +ll+++++                     ++     + l+v+d++ + a+lv  GA+ +
    KIR61743.1  15 DARQAAFYFGTAVGFRLAGQG----GPETGLA---GQRSLLLRQADIrmvltsgltaghrastyvqrHGDGIAVVALEVDDAAGAYAELVGRGATPV 104
                   666666667788899988888....4443333...3444444444446666666666666666655444455788999******************* PP

  Glyoxalase_6  85 reprdgthgr 94 
                   ++p   t+++
    KIR61743.1 105 TPPVTFTGAD 114
                   9998776555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.022
  Glyoxalase_6   8 dpaalaaFwaaalgweveree......aaledpegvgpaaedaatllfqrvpe..............paknrvHldlavedldaevarlvalGAr 82 
                   + +a +a +++++g+    +e      +a+ +  + +    + +tl++ + ++              ++    Hl l+++d+ ++v +l + G r
    KIR61743.1 176 QLDATVAHYERVFGFAQIFTEhvevagQAMNSTVVQS--PSGRVTLVLLEPDRshrpgqidafltehAGAGVQHLGLRTDDIVTAVGALRSRGVR 268
                   5677788888888888777777777553333332333..3555566666666678888999999875333468********99999999888866 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.5
  Glyoxalase_6  70 daevarlvalGArv 83 
                   +a+ ++l a+GA+ 
    KIR61743.1 346 EAKERELAAAGATP 359
                   57788899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2519.46
//
Query:       KIR61744.1  [L=309]
Description: phytanoyl-CoA dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-23   83.8   0.2    2.6e-23   83.4   0.2    1.1  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.2   1.4e-27   2.6e-23       2     211 .]      28     250 ..      27     250 .. 0.89

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 1.4e-27
                 HHHSEEEETTSS-HHHHHHHHHHHHHHHHHCHTTCCSEEEEECEEESTTCCCEECCCHHCHHHHTTHHHHHHHHHHHHTSCEEEE.......EEEEEEE CS
        PhyH   2 eedGylviegflsaeevealraeiealldralesgdkidfffeekaaadedglleksinkvghflhprkvadlvrailgqdvyva.......avlqsmy 93 
                  e+G  + + ++++eev+al a+++++ d +++++  +++ + +  + + +g++ +  n + h+ h+  +a+++r  l  +v+++       +v qs +
  KIR61744.1  28 AEHGWYLSKKLFTDEEVDALVAATDRYYDGERDRTLPVRPPKLAYWDPS-KGPV-QRHNDYVHYEHD-GIAAILRKPLLGAVAARlaraaeiRVFQSTL 123
                 6889999999****************96666666666665555555554.5555.788999******.9******999999999999988888888888 PP

                 EEEEE-TTTCB-E..EEEE-SGGGSTEESGCCEEEEEEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTS.........CCCTTTGHGSCEEE CS
        PhyH  94 qdifkqpkiGgev..qpwHqDstflptdpeesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteae.........ddeakkedeeeavp 181
                   i+k+p  G+++   pwH D ++++    e ++++ i + d+ ee G   ++ GSH+w+e+    ++ ++ +e+             a++ ++ + +p
  KIR61744.1 124 --IYKPPIDGEPSniVPWHFDKHYWSSSSSEDMLTAFIPFHDCGEEMGTITMVDGSHRWKEIGADDTVVRHFAERDrdqleemlaRNAAHNGAQIRKIP 220
                 ..************************8889******************************9988888888888877999*****9999999999999** PP

                 E.BTTTEEEEEETTSEEEE-TB.SSSXEEE CS
        PhyH 182 vevkaGdavlfhgrllHgsgaNrsdksRra 211
                 +++ +G + ++h+r++HgsgaN s ++Rra
  KIR61744.1 221 MVIPKGHVSFHHCRTYHGSGANVSGRPRRA 250
                 ****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2121.59
//
Query:       KIR61745.1  [L=265]
Description: heme oxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-96  320.0   0.0      1e-95  319.8   0.0    1.0  1  DUF3050          Protein of unknown function (DUF3050)
    3.1e-11   43.4   0.1      4e-11   43.0   0.1    1.2  1  Haem_oxygenas_2  Iron-containing redox enzyme
     0.0067   16.4   0.0      0.024   14.6   0.0    1.9  1  T2SSF            Type II secretion system (T2SS), protein F


Domain annotation for each model (and alignments):
>> DUF3050  Protein of unknown function (DUF3050)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.8   0.0   1.7e-99     1e-95       2     233 .]      28     255 ..      27     255 .. 0.97

  Alignments for each domain:
  == domain 1  score: 319.8 bits;  conditional E-value: 1.7e-99
     DUF3050   2 leHplykeiksledlrifmehHvfavwDFmsLlkaLqreltcvevpWvpsknaearrliNeivlaEEsDeeeegealsHfelYleameevgadtseiek 100
                 ++Hply+++++ e+l +fmehHvfavwDFmsLlk+Lqr+ltcv+vpW+p++ + +rrliN+iv+ EEsD e  + ++sHfelY+++m+e+gadt ++e+
  KIR61745.1  28 VKHPLYANLDTHEALVTFMEHHVFAVWDFMSLLKSLQRQLTCVDVPWIPTGPTGSRRLINDIVMVEESD-ELGEGYISHFELYVRGMAEAGADTGAVEA 125
                 79*******************************************************************.77789************************ PP

     DUF3050 101 llelleegksveealeaaevpeaakeFvettfevieegkahevaaaftfgREdlipdmfrsllkelekkaeekeleklkyYleRhieldgdeHgplalk 199
                 l++ll++g+ v+eal++a vp + ++F  tt+++ie++ +h++aaaf+fgREdlipdmf+++++  e+   +++l++++ YleRhie+dg++H+p+a++
  KIR61745.1 126 LIDLLRAGTPVTEALAKAGVPGPSAAFAATTWKIIESTPVHCQAAAFAFGREDLIPDMFTQVVAVNER---SQKLHTFVDYLERHIEVDGEQHTPMAMQ 221
                 ***************************************************************95444...5669************************ PP

     DUF3050 200 lleelcgddeekweeaeeaakealeaRiklWdgi 233
                 +l++lcgdd++kw+e++++++ al aR++lWd+i
  KIR61745.1 222 MLADLCGDDDTKWQECADTVNLALAARAQLWDDI 255
                 ********************************87 PP

>> Haem_oxygenas_2  Iron-containing redox enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.1   6.6e-15     4e-11       3     177 ..      45     248 ..      43     249 .. 0.81

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 6.6e-15
  Haem_oxygenas_2   3 flrqrapyklvfgdwlalvhsrlt.............drevkrallenls.EElGdgdlernHvelyrrllkalGldeeplealpel.....pe 77 
                      f++++ +++ +f  +l  + ++lt              r++ ++++ +   +ElG+g    +H ely r +++ G d  ++eal  l     p 
       KIR61745.1  45 FMEHHVFAVWDFMSLLKSLQRQLTcvdvpwiptgptgSRRLINDIVMVEEsDELGEGY--ISHFELYVRGMAEAGADTGAVEALIDLlragtPV 136
                      677777777777777777777777777778888877755555556666655****999..88********************999998877777 PP

  Haem_oxygenas_2  78 tlalinl............feavalsrrll..gallGallalEllvsletlklaeelre.lgldeeapeyfdlHvtiDna.Haamaleaviell 155
                      t al ++              +  ++ + +   ++++++++ E l + +++++++  ++  +l  + ++y+  H+++D + H+ ma++++++l+
       KIR61745.1 137 TEALAKAgvpgpsaafaatT-WKIIEST-PvhCQAAAFAFGREDLIPDMFTQVVAVNERsQKLH-TFVDYLERHIEVDGEqHTPMAMQMLADLC 227
                      777777799***99977531.2222233.23588899*******************99978887.89************99******7777777 PP

  Haem_oxygenas_2 156 ateepeeqedvlegawrrlqlg 177
                       ++ +++ +++++++  +l+++
       KIR61745.1 228 GDD-DTKWQECADTVNLALAAR 248
                      777.5*************9997 PP

>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     4e-06     0.024       2      89 ..     123     209 ..     122     215 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4e-06
                 HHHHHHHHHTT--HHHHHHHHHHHHSSHHHHHHHHHHHHHHHTTSSHH...HHHCT-TT.TS.-HHHHHHHHHHHHHT-HHHHHHHHHHHHH CS
       T2SSF   2 lrqlatllsaGvplveaLellaeeaengplaeelkriarrlraGgsls...ealertpssef.pelvvqlirageeggnLaevLerlaeyle 89 
                 ++ l  ll+aG p+ eaL  ++     +  + +++++  ++ + ++++   +a+  ++++++ p++++q++++ e++++L  + + l +++e
  KIR61745.1 123 VEALIDLLRAGTPVTEALAKAG----VPGPSAAFAATTWKIIESTPVHcqaAAF-AFGREDLiPDMFTQVVAVNERSQKLHTFVDYLERHIE 209
                 567899************9999....3558888899999999999997532444.55555666*****************999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 1674.23
//
Query:       KIR61746.1  [L=323]
Description: pyruvate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-61  207.2   0.0    3.5e-61  206.8   0.0    1.1  1  E1_dh            Dehydrogenase E1 component
    0.00082   18.4   0.0     0.0012   17.9   0.0    1.2  1  Transketolase_N  Transketolase, thiamine diphosphate binding 
     0.0033   16.7   0.1      0.005   16.1   0.1    1.2  1  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
  ------ inclusion threshold ------
      0.029   14.2   1.9        1.1    9.1   1.9    2.4  1  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
       0.15   11.4   0.7       0.25   10.7   0.7    1.3  1  Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal 


Domain annotation for each model (and alignments):
>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.8   0.0   9.9e-65   3.5e-61       3     262 ..      13     273 ..      11     304 .. 0.90

  Alignments for each domain:
  == domain 1  score: 206.8 bits;  conditional E-value: 9.9e-65
                 HHHHHHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TTSEEEESS--HHHHHHTT--HHHHHHHHTT-T....TTSSGTT-.-E..BTT..BE CS
       E1_dh   3 lvllrrvedaldalykrkkrigfyhlsagqealkvgiaaalekeDliiteYReagvllarglsleeilaeltgkv....kgkggsrhelmyaekesril 97 
                 ++l+rr+e+++  l+ +  ++g  h++ gqe ++ g+ aal ++Dl+  ++R++g++la+g++   +lael g++    +g+ggs+h  ++ + +  +l
  KIR61746.1  13 VRLIRRFEERAVDLVRAGAIVGGIHPYLGQEGIAAGVCAALRDDDLVTGTHRGHGHVLAKGADPARMLAELLGREtglnRGRGGSMH-AADLAVG--VL 108
                 67899**********************************************************************9**99*******.7766666..** PP

                 EE-SSTTTHHHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEESEETTEEHHHH-S---GGG..TTTTS-EEEEETTS CS
       E1_dh  98 ggngivgaqvplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpvifvveNNkygisTeaekasaskeladrargvgipglrVdgnD 196
                 g+n ivga   ++ G++ a + +g++ v ++++GDgA n+G + ea+nlaalw++pv+fv+eNN+y+ + ++e a a + +  ra ++g+p   Vdg+D
  KIR61746.1 109 GANAIVGAAGAILTGAVWARRRRGDDLVGATFFGDGAVNEGMLLEAFNLAALWRVPVLFVCENNGYATTMPVEGAVAGT-IPGRAEAFGMPAAVVDGQD 206
                 *******************************************************************999999888876.5567*************** PP

                 HHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHS..SSHHHHHHHHHHHH-HHHHHHHHH CS
       E1_dh 197 plavyeAvkfAaeraregkgpllielvtYRyggHsesDdpst..yrtreeveevrkkkdpiqrlkelL 262
                 p+av+ A+ +A+ r r+g gp lie+ tYR+  H +   + +  yr+++ev + r+  dp+ +  ++L
  KIR61746.1 207 PEAVRDATAAAVARMRAGGGPELIEARTYRFDAHHTFEHAVRldYRAPQEVAAGRSR-DPVDIQGARL 273
                 **********************************9998886444********99998.8877766666 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.3e-07    0.0012     149     243 ..     139     234 ..      96     244 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.3e-07
                      EEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTEEGGGT--S-HHHHHHHTT-EEEEETTTT-HHHHHHHHHHHHH-T...TS-EEE CS
  Transketolase_N 149 vilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidGeteisftedvakrfeaygWhvievedgedveaikaaieeakaek...dkPsli 239
                       + gDg ++eG+  ea +la+  ++  L v  ++n  +    +e +++  +  r ea+g   + v dg+d ea+++a ++a a       P li
       KIR61746.1 139 TFFGDGAVNEGMLLEAFNLAALWRVPVLFV-CENNGYATTMPVEGAVAGTIPGRAEAFGMPAA-VVDGQDPEAVRDATAAAVARMragGGPELI 230
                      588*********************998876.69999999********************9765.689999999999988876543111568999 PP

                      EEE- CS
  Transketolase_N 240 klrt 243
                      + rt
       KIR61746.1 231 EART 234
                      8888 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.4e-06     0.005     120     182 ..     121     184 ..     110     194 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.4e-06
  DXP_synthase_N 120 alGlavardlkgekkkvvaviGDgaltgGmafealnnigelkkkllvilNdNemsisknv.Gal 182
                      +G + ar+ +g++    +  GDga+  Gm +ea+n ++  +  +l +  +N  + + +v Ga+
      KIR61746.1 121 LTGAVWARRRRGDDLVGATFFGDGAVNEGMLLEAFNLAALWRVPVLFVCENNGYATTMPVeGAV 184
                     5788999999999999999*********************************999888774555 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.9    0.0003       1.1      31     152 ..     115     231 ..     107     232 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0003
                   TTHHHHHHHHHHH...STTS.EEEEEEEHHH..HHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTTTSBB.BS----HHHHHHHTT CS
  TPP_enzyme_C  31 GyglpaAiGakla...kpdr.evvaivGDGg..flmilqelatavrrnlpitvvvlnNegygmtggqqepfggkrksgpagkdlkpvdfaklaealG 121
                   G + ++ +Ga  a   + d      + GDG+    m l+++  a+  ++p+++v+ nN++        +p   +  +g          +   aea+G
    KIR61746.1 115 GAAGAILTGAVWArrrRGDDlVGATFFGDGAvnEGMLLEAFNLAALWRVPVLFVCENNGYATT-----MPVE-GAVAG---------TIPGRAEAFG 196
                   555555555555422122321334678888833357788888888888888888877776522.....2222.22222.........2446799999 PP

                   SEEEEESSH.HHHHHHHHHHHH....CSSSEEEEE CS
  TPP_enzyme_C 122 akgarvekadveeleealkeal....ekkgpalie 152
                   +++a+v+ +d+e +++a ++a+    + +gp lie
    KIR61746.1 197 MPAAVVDGQDPEAVRDATAAAVarmrAGGGPELIE 231
                   99999999999999999999987777888888887 PP

>> Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.7     7e-05      0.25     168     217 ..      97     146 ..      79     149 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7e-05
  Chal_sti_synt_N 168 lrlakdiaennkGarvlvvaseitvlgfrgPskdrlddlvGaalfGdGaa 217
                         a d+a    Ga  +v a+   + g     + r ddlvGa++fGdGa 
       KIR61746.1  97 SMHAADLAVGVLGANAIVGAAGAILTGAVWARRRRGDDLVGATFFGDGAV 146
                      55688999999999999999998888888899999*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2198.53
//
Query:       KIR61747.1  [L=323]
Description: transketolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-31  109.6   0.0    2.2e-31  108.9   0.0    1.2  1  Transket_pyr     Transketolase, pyrimidine binding domain
    2.4e-29  101.7   0.0    3.6e-29  101.2   0.0    1.3  1  Transketolase_C  Transketolase, C-terminal domain
    0.00029   21.1   0.0    0.00056   20.2   0.0    1.5  1  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.0   3.6e-35   2.2e-31       3     172 ..       4     172 ..       3     176 .. 0.92

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 3.6e-35
                   EEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGG..HHGGHHHHH CS
  Transket_pyr   3 iawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangA..qiyadqair 97 
                   +++rka++ ala ++ +d++v+l+g+D++     v+ gll+ +g++rv+d+++sEqa++ fa Gaalag l+++ve+q    +     qi++++ ++
    KIR61747.1   4 LSYRKALTRALADEMSRDESVFLLGEDIRVAASNVTAGLLKRFGPDRVVDTPLSEQAFTSFATGAALAG-LRPVVEFQIPSLLFLVfeQIVNHAHKF 99 
                   689******************************************************************.9*****9965444433447******** PP

                   CHHHHHT--EEEEESBSGGGSTTG.TTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-S CS
  Transket_pyr  98 sgeakgklkvgvvtrlpigvgedG.pehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpk 172
                    ++++g+++v+v+ + p +    G + ++s  ++++++++ g+++v+P++pa++++ll  air+   +Pvv++ p 
    KIR61747.1 100 PLMTGGQAEVPVTYLVPGSGSRTGwAGQHSDHPYSLFAHV-GVTTVVPATPADAYGLLVSAIRH--VDPVVVFAPA 172
                   ***********99999999988884669***********9.9*********************5..57****9985 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.0   6.1e-33   3.6e-29       1     122 [.     192     310 ..     192     312 .. 0.95

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 6.1e-33
                      TEEEEEETTSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSS CS
  Transketolase_C   1 gkaeilregkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdglda 94 
                      g+++++r g+dvt+va+G  v+ al++aeeL+ +++s+eV d+rt+ p+D++ + +sv++tgrlvvv++ ++++Gi+ e++a++ e    +l a
       KIR61747.1 192 GRGRVHRAGDDVTVVAVGHLVHDALAVAEELA-DQVSVEVFDPRTLYPFDWDGLTASVARTGRLVVVDDSNRSCGIAGEIIATVVE--RVRLLA 282
                      78899**************************7.66***************************************************..68**** PP

                      EEEEEEE-SS.SSSSGHHHHHHHTT-SHH CS
  Transketolase_C  95 pvkrvggpdv.iepgsaeelekafgldae 122
                      p +rv+ pd  + p++ ++l +a+ +  e
       KIR61747.1 283 PPRRVTRPDGaVLPFA-PALDRAVQPGRE 310
                      ***************9.889998888766 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   9.4e-08   0.00056       2      74 ..     202     274 ..     201     293 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 9.4e-08
                 SEEEEE-STHHHHHHHHHHHHHHTT--EEEEEES--BS--HHHHHHHSTT-SEEEEEE.-S--TT-G-HHHHHH CS
     PFOR_II   2 evvivamGsvagtaksavdelReegikvGllrlrtlrPFPeeelkellkkvkkvvvld.rnisfgseGqlveev 74 
                 +v +va+G ++ +a ++++el ++ ++v ++ +rtl+PF  + l   ++++ ++vv+d  n s g++G ++  v
  KIR61747.1 202 DVTVVAVGHLVHDALAVAEELADQ-VSVEVFDPRTLYPFDWDGLTASVARTGRLVVVDdSNRSCGIAGEIIATV 274
                 799*******************99.*******************998888877777761566777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2245.95
//
Query:       KIR61748.1  [L=452]
Description: hypothetical protein TK50_29930 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-06   25.5   0.0      0.014   14.6   0.0    2.1  2  GSP_synth       Glutathionylspermidine synthase preATP-grasp
    0.00017   21.0   0.0    0.00034   20.0   0.0    1.5  1  ATPgrasp_YheCD  YheC/D like ATP-grasp
  ------ inclusion threshold ------
      0.011   15.2   0.0        1.2    8.5   0.0    2.3  2  GSH-S_ATP       Prokaryotic glutathione synthetase, ATP-grasp
      0.026   14.9   0.3       0.53   10.7   0.0    2.4  2  PhoR            Phosphate regulon sensor protein PhoR
       0.04   12.8   0.0       0.07   12.0   0.0    1.4  1  CP_ATPgrasp_2   Circularly permuted ATP-grasp type 2
      0.051   13.6   0.0       0.11   12.5   0.0    1.5  1  ATP-grasp_3     ATP-grasp domain


Domain annotation for each model (and alignments):
>> GSP_synth  Glutathionylspermidine synthase preATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00027       0.8      31     108 ..      58     136 ..      36     139 .. 0.82
   2 !   14.6   0.0   4.7e-06     0.014     181     338 ..     219     391 ..     212     407 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00027
   GSP_synth  31 laeveeleeateelhqmcleaaeevveeeellar.lgipeellelireSwerrepsL.ygRfDlaydGkgpakllEyNaD 108
                 ++   el+e++++l q++lea ++ +++  +l+r lg+p+e  +l+ +    +e+ L   R D   +G g +k +EyN D
  KIR61748.1  58 ADAFRELNEVCDRLAQLILEACQRRARTAGELTRlLGVPAEETKLLDTDEVLSEALLaAYRPDVLISG-GVPKFVEYNID 136
                 6677899****************999988899988***********984433444331449****997.679******99 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 4.7e-06
   GSP_synth 181 LqdtakeagleteflpiedigldeeegrfvdadgrkiellfkLyPwEwlvedefgeelaealle..vrllePawklllsnKalLallWely....pghp 273
                 L+d a++ g++  +++++   lde ++r+v  dg ++++lf+L+    + + +  +++a al+     ++    + ll nK   a lWe      +  +
  KIR61748.1 219 LADRARHFGIDLVIAQLKLATLDE-DKRLVV-DGAPVDALFRLFVPNRVHASAGLDAVAGALAAgtLPMFVSSAAWLLGNKINFAWLWEDLdtlpEPDQ 315
                 778888889999999999999998.555554.3899*******999999998866666665554557788888999*************9977763333 PP

   GSP_synth 274 nLLpayfeede.........eeekgkkyvkKplfgREGanveiveegsevaeekege...ygeekviyQeyaelpkf 338
                  L+  y+ ++          + +++++ v+Kp+ g  G  v + +e++ ++ e eg     +e ++i Qey+++ + 
  KIR61748.1 316 ALVRRYVPRTTaltaaelprALADQHDLVAKPADGSAGIGVLLGRETDPQKWE-EGLraaLDEGGYILQEYMPADRV 391
                 3666666444466666666678899****************999775555444.4433448899********99876 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.1e-07   0.00034      23      66 ..     316     358 ..     304     392 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.1e-07
  ATPgrasp_YheCD  23 pelrpyLPetellesledleemlekyksvylKpanGskGkgilr 66 
                       +r+y+P+t+ l ++ +l + l+ ++++++Kpa+Gs G g+l 
      KIR61748.1 316 ALVRRYVPRTTAL-TAAELPRALADQHDLVAKPADGSAGIGVLL 358
                     5689*********.***************************986 PP

>> GSH-S_ATP  Prokaryotic glutathione synthetase, ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0077        23      68     105 ..     227     263 ..     214     283 .. 0.74
   2 ?    8.5   0.0   0.00041       1.2      14      79 ..     324     387 ..     316     406 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0077
                 TTS-EEEEE--GGGGG-EEEEEEETTEE-SEEEEE..E-- CS
   GSH-S_ATP  68 gkepviaqrylpeikeGDkRillvdGepigyalaR..vpa 105
                 g   viaq  l    e DkR l+vdG p++ al R  vp+
  KIR61748.1 227 GIDLVIAQLKLATLDE-DKR-LVVDGAPVD-ALFRlfVPN 263
                 5567888888887777.999.579******.999944454 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00041
                 -EEEES-HHHHHHHHHHHSSEEEEESS--TTTT-EEE-TT-TT.HHHHHHHHTTTTTS-EEEEE--G CS
   GSH-S_ATP  14 ktlvskdkeeirafleeqgdvilKPldgkgGegvfrvkksdpn.lksilellteegkepviaqrylp 79 
                 +t  +  ++e+ + l++q+d++ KP dg++G gv+  +++dp+  +  l +    ++   i+q+y+p
  KIR61748.1 324 RTT-ALTAAELPRALADQHDLVAKPADGSAGIGVLLGRETDPQkWEEGLRAAL--DEGGYILQEYMP 387
                 444.344567778888999****************998887641333333333..333467777776 PP

>> PhoR  Phosphate regulon sensor protein PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00018      0.53      56      84 ..      23      51 ..      13      53 .. 0.84
   2 ?    1.7   0.1      0.12   3.6e+02      18      56 ..     270     307 ..     263     315 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00018
        PhoR 56 kklepPdgsGlWeeifdglyrlqkrnrkr 84
                +   + +g G+W+e+f+g   + + +r  
  KIR61748.1 23 RAAMVAAGAGAWKEVFYGCATYNQTWRLA 51
                6667889*****************99965 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.12
        PhoR  18 lvgllvgalaallllalllllawhlyqllrLsrWLrkpk 56 
                  + +++galaa  l + +   aw l +   +  WL+++ 
  KIR61748.1 270 GLDAVAGALAAGTLPMFVSSAAWLLGNKINF-AWLWEDL 307
                 6777888899998888888888999888888.8998765 PP

>> CP_ATPgrasp_2  Circularly permuted ATP-grasp type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.3e-05      0.07     275     374 ..     326     428 ..     290     429 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.3e-05
                    ETTSHHHHHHHHHSGGGEEEEE--------EEEGGG--HHHHHHHHHHHHHSGGGEEEEE-----EEEEE.......E..EEEEEEEEE-EEE.ES CS
  CP_ATPgrasp_2 275 wcgeeealeevlenldelvvkpvdesggegvligpelsaaeleelrarikanperyvaqevvelstaptl.......k..leprhvdlRvFvlate 361
                       ++++l  +l++ ++lv kp+d+s g gvl+g+e ++++ ee  ++   +   y+ qe+++  ++ +        +   ++ + +l ++++   
     KIR61748.1 326 TALTAAELPRALADQHDLVAKPADGSAGIGVLLGRETDPQKWEEGLRAAL-DEGGYILQEYMPADRVAMDfvrmetgEtvTADVPYSLAPYLFG-- 418
                    555678889999***************************99988655544.4468*******99998665555554414466777777777773.. PP

                    .SEEE-S--EEEE CS
  CP_ATPgrasp_2 362 egirvmpggLtRv 374
                       r+  ggL+Rv
     KIR61748.1 419 ---RTGSGGLARV 428
                    ...4567888887 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.8e-05      0.11      23      81 ..     329     397 ..     312     406 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.8e-05
                  .-EESS--...SSSEEEEESS-------B--SS--TTE................EEEE---SEEEEEEEEE CS
  ATP-grasp_3  23 eaeeleee...ekklvvKprdGaggesvrvveekeeaeaaieeve.........lvqefieGkplSvslls 81 
                  +a+el ++   ++ lv+Kp+dG++g +v++ +e + ++                ++qe+++ + + ++++ 
   KIR61748.1 329 TAAELPRAladQHDLVAKPADGSAGIGVLLGRETDPQKWEEG--LraaldeggyILQEYMPADRVAMDFVR 397
                  44444433444899*****************99865552222..134678899999999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3085.48
//
Query:       KIR61749.1  [L=340]
Description: signal peptide protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2556.49
//
Query:       KIR61750.1  [L=542]
Description: AMP-dependent synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-58  197.1   0.0    6.2e-58  196.4   0.0    1.3  1  AMP-binding    AMP-binding enzyme
    9.3e-19   68.2   0.8      2e-18   67.1   0.8    1.6  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.4   0.0   6.9e-62   6.2e-58       7     422 ..      21     433 ..      17     434 .. 0.84

  Alignments for each domain:
  == domain 1  score: 196.4 bits;  conditional E-value: 6.9e-62
                  HSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTC CS
  AMP-binding   7 ktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvds 104
                   + d+ alv   +g++lTY ++ ++v+ +A +L++ Gv++g  V+++l n +e  ++ la+  +G+ ++++ p ++++e+   ++ s++++++  +d+
   KIR61750.1  21 GFGDREALVG--GGRRLTYLDVAAQVRGMAGALTRGGVRPGAAVLVMLGNAVEGPLLQLALHLLGCRTMWVAPVTSRREVDDFVRLSRPEAFV--YDA 114
                  5789****99..9*********************88*********************************************************..777 PP

                  CC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.................-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHH CS
  AMP-binding 105 el.leklleaaakleavklvivldadellkeeelkeeeeseekae.................kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnl 184
                  ++      ++aa + a   v +l  +++    +  +  +++                      p++   ++p+    ++ TSGTTG+PK V ++  ++
   KIR61750.1 115 RDgDGLGPRIAA-DLAGVPVFCLGPGGAGPDLTTASPGPDAT--SaspgpglaaadldagagLPVD--VPEPE---SFLQTSGTTGTPKLVHHRE-SF 203
                  774444444444.44556667777666655533333333333..1345778999999877543323..35555...5788**********98875.44 PP

                  HHHHHHHH..HHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHC CS
  AMP-binding 185 vanvaslk..letrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkak 280
                    +v +l+  ++   ++ +  + ls  p++ + g+ + +l+ l+sG+ + l ++   +dp+++++++ +++++ ++++P +l  +l++++l       
   KIR61750.1 204 YRQVLALAagFRSG-GI-PLLRHLSHSPMWLASGQ-ITTLVNLFSGGVLFLRER---WDPAAFIATVGRERINSTFVTPPMLYEVLDHPDLP----GA 291
                  44444444333333.22.45799***********9.***********8888764...5678899************************9999....55 PP

                  CGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEE...CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS- CS
  AMP-binding 281 dlsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtv...lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvm 375
                  d+s++ ++ +g++p  p+ lr++ a+fg+ +  +YGl+E+ ++++     +++e+ ++l s+G++  +v v+i D + g  +p g+ Ge++vr +  +
   KIR61750.1 292 DFSAMFMFNVGAGPAAPARLRQAIARFGPVLRIVYGLSEAVVITAQpglTEDPEHPERLRSCGRAYGDVAVEIRDAD-GAVLPAGVDGEVWVRTKLSF 388
                  9999999899*******************9999***********6667766677778999****************9.******************** PP

                  SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 376 kgYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                   gY+++pe+tae+++  ++w+rT D+g+ld+dGyl++v+R+ d i +
   KIR61750.1 389 AGYHGQPELTAETLV--DGWVRTRDVGHLDADGYLYLVDRLADRILT 433
                  **************9..57**********************999865 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.8   2.2e-22     2e-18       2      76 .]     445     519 ..     444     519 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 2.2e-22
                    HHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    +E +l+ hp+V+ aaV+Gvpdev Ge + a+Vv ++g + +e+eL++ v +el + ++p +v+fvd+lp++rs K
     KIR61750.1 445 IEDVLAGHPQVRAAAVIGVPDEVAGELPYAYVVAAPGATVTEAELIDLVIAELSETWAPGAVEFVDALPLNRSAK 519
                    8********************************987855589*******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       158  (0.00881254); expected 358.6 (0.02)
Passed bias filter:                      132  (0.00736237); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3704.36
//
Query:       KIR61751.1  [L=405]
Description: cytochrome P450 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-33  115.9   0.0    4.2e-30  104.9   0.0    3.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.0   2.3e-34   4.2e-30      43     433 ..      42     376 ..       9     386 .. 0.83

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 2.3e-34
                 TEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEE CS
        p450  43 skpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagesseld 140
                 s+ ++v +g++ v +vl +     ++   + + ++   ++ + +++f n+++++++R ++ +t+t    l +le++++++++ l++++ +     +e+d
  KIR61751.1  42 STVSAVAGGYDVVDQVLRDPE-WLKQ-SPPGWEQHEILRTFESSMMFINPPDHTRMRAVFAKTFTPR-RLgALEPVITRVTDTLLDRMAEAGAGGAEVD 137
                 46678999************4.4444.4899999999*****************************9.999*****************99988885555 PP

                 THHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSC CS
        p450 141 itellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsakksrr 239
                    +++++a+ + + ++ +  ++ l + +l+ + + v+ +           +++ +++   p++l +    a  +l +++++ i err+   ++     
  KIR61751.1 138 ---FVADFAYPIPALVMAEF-IG-LPEADLPWYRERVDWI-----------DDFLDVAGATPERLAKANT-AAAELRGYYRERIAERRRAPGED----- 214
                 ...55555555555544444.55.4555555555555555...........3444444456777776666.669**************998888..... PP

                 SHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSS CS
        p450 240 dfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvv 338
                  +++ l++a  +  g   l+++el  ++++l+ a++ Tt    s +L +L+++Pev+++l  +                   ++++ ++ E+LR++++v
  KIR61751.1 215 -LISGLVEAL-DAGG-VDLTEDELISNLIVLFNASFVTTVYMFSNGLPLLLEHPEVTAALPGD------------------AELTRGCVDEVLRMQSPV 292
                 .677777774.3344.69*************************************99988654..................369*************** PP

                 TTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHE CS
        p450 339 plllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnF 433
                 + +l R++++d+v+ g+++ +G +v++ + a +rdp+ f +P++Fdp R  +           +l+FG G + C+G  + r+e +l+l +l+ +F
  KIR61751.1 293 H-FLARAAPRDTVLHGVKVAEGENVMLLIAAANRDPARFTDPDRFDPRRAGPP----------SLAFGVGLHFCLGSAVSRLEGQLALPRLFARF 376
                 *.*********************************************996666..........69***************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2979.72
//
Query:       KIR61752.1  [L=335]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-77  260.2   0.3      2e-77  259.8   0.3    1.2  1  Abhydrolase_3    alpha/beta hydrolase fold
    3.1e-11   42.8   0.3    8.3e-11   41.4   0.3    1.5  1  COesterase       Carboxylesterase family
    5.7e-08   32.5   0.0     0.0022   17.5   0.0    2.2  2  Peptidase_S9     Prolyl oligopeptidase family
      3e-05   23.7   0.0     0.0026   17.3   0.0    2.3  2  DLH              Dienelactone hydrolase family
  ------ inclusion threshold ------
       0.12   11.6   0.0        9.7    5.4   0.0    2.2  2  Hydrolase_4      Serine aminopeptidase, S33
       0.18   10.7   0.0       0.24   10.3   0.0    1.2  1  Chlorophyllase2  Chlorophyllase enzyme


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.8   0.3   6.8e-81     2e-77       1     210 [.      79     296 ..      79     297 .. 0.91

  Alignments for each domain:
  == domain 1  score: 259.8 bits;  conditional E-value: 6.8e-81
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardeg 96 
                    lvyf GGG++lgs+dt+d +cr+la+++g++vv v YrlAPehpfPaav+d+ aa+ wla++a e+gadp+r++++GdSaGGnlaaav+l  rd g
     KIR61752.1  79 LVYFFGGGWTLGSVDTADGICRRLANATGCQVVTVGYRLAPEHPFPAAVHDCHAAVAWLAAHADEFGADPDRLAVGGDSAGGNLAAAVTLLSRDGG 174
                    79************************************************************99******************************** PP

                    ---EEEEEEESE-SST......SSTTSHHHHHCHHT....TTSSS.SCHHHHHHHHHHHSS.GGGGGSTTTSGGGCS-SST---EEEEEETT-TTH CS
  Abhydrolase_3  97 epkvagqvliyPvtdl......ertesesikkaeel....adgpl.ltraaldlfwrlylp.eadrddplaspllaedlsglpptlvvvaefDplr 180
                    +p++a+q+l+yP td       +   + s + ae++    +++pl ++r +++++  +ylp  ad+++plaspllaedl+glpp+lv++ae+Dplr
     KIR61752.1 175 GPALAAQLLVYPNTDQreraepA---G-SADPAESAgpggEQDPLlFNRHSVAWYRGHYLPePADAANPLASPLLAEDLTGLPPALVITAEYDPLR 266
                    ************88887664321...2.22222221123566676479************88********************************** PP

                    HHHHHHHHHHHHTT--EEEEEETTEETTGG CS
  Abhydrolase_3 181 degeayaerlraagvevelieyegmvHgfa 210
                    +ege+ya+rlraagv+vel +y+gm+Hgf+
     KIR61752.1 267 EEGERYADRLRAAGVPVELARYPGMIHGFF 296
                    *****************************7 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.3   2.8e-14   8.3e-11     102     204 ..      73     168 ..      59     175 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.8e-14
                 TSSEEEEEEE--STTTS-BGCGS-T..HHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHH CS
  COesterase 102 kkklPVlVwihGggfqtgsaseydg..saLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWVkenIasFGGdpervtlfGesAGaas 198
                 +  lP lV+++Ggg + gs  ++dg  + La+  ++ vVt+ YRl +         e p  +++ D ++A+ W+  +  +FG dp+r  + G+sAG+ +
  KIR61752.1  73 DGPLPTLVYFFGGGWTLGSVDTADGicRRLANATGCQVVTVGYRLAP---------EHPFPAAVHDCHAAVAWLAAHADEFGADPDRLAVGGDSAGGNL 162
                 4668****************998864489****************86.........6788899**********************************99 PP

                 HHHHHH CS
  COesterase 199 vsllll 204
                 +++ +l
  KIR61752.1 163 AAAVTL 168
                 998876 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.3e-07    0.0022      45      82 ..     127     167 ..     124     172 .. 0.81
   2 !   12.8   0.0     2e-05     0.059     143     209 ..     252     320 ..     219     323 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7.3e-07
                   HHHHHHHHHHH...HHTTS--GGGEEEEEETHHHHHHHHHH CS
  Peptidase_S9  45 fdDfiaaaeal...akegyvdserlaitGgSyGGyltgaal 82 
                   ++D+ aa+ +l   a+e+ +d++rla+ G S+GG l++a+ 
    KIR61752.1 127 VHDCHAAVAWLaahADEFGADPDRLAVGGDSAGGNLAAAVT 167
                   68999999988333555689****************99975 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2e-05
                   --EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-S.STTSS...HHHHHHHHHHHHHHHHHC CS
  Peptidase_S9 143 ypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegH.gvgkp...rakveelarllaFlkeal 209
                    pp L+i+++ D     +e+++++++L+ +g++v+l  +p+  H  +++p   +a ++ + r +aFl + l
    KIR61752.1 252 LPPALVITAEYDPLR--EEGERYADRLRAAGVPVELARYPGMIHgFFAMPgafDAGRHAQDRAAAFLRDRL 320
                   589999999999866..9**************************523333111455677778888877665 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0089        27      78     156 ..     126     214 ..     116     226 .. 0.73
   2 !   17.3   0.0   8.8e-07    0.0026     144     195 ..     252     301 ..     219     318 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0089
         DLH  78 vlddlkaavaylksvpe...vstkkvgvvGfCmGGalallla...aev..pevdaavafYGlspekeleeaakikapi..lalfgeeDe 156
                  ++d +aava+l++  +   +++++++v G   GG+la ++    + +  p+++a +  Y+++ ++e +e a ++ p    +  ge+D+
  KIR61752.1 126 AVHDCHAAVAWLAAHADefgADPDRLAVGGDSAGGNLAAAVTllsRDGggPALAAQLLVYPNTDQRERAEPAGSADPAesAGPGGEQDP 214
                 566778888888766542226899************99765422143346899999999**9999998888888877522445566666 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 8.8e-07
         DLH 144 kapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsre 195
                   p l++ +e D+  + +  e+ +  l+aa+v++el  Ypg  H+F++   +
  KIR61752.1 252 LPPALVITAEYDPLREEG--ERYADRLRAAGVPVELARYPGMIHGFFAMPGA 301
                 45899********99988..79************************986555 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0072        21      55      99 ..     123     172 ..     114     203 .. 0.66
   2 ?    5.4   0.0    0.0032       9.7     193     235 ..     254     296 ..     211     298 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0072
  Hydrolase_4  55 fddyvdDlaafvekvkeehpel.....plfllGhSmGGliallyllrypd 99 
                  f   v D++a+v  ++++  e      +l + G S GG +a++++l  +d
   KIR61752.1 123 FPAAVHDCHAAVAWLAAHADEFgadpdRLAVGGDSAGGNLAAAVTLLSRD 172
                  56667777777744442222223346789*************99966655 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0032
  Hydrolase_4 193 PllllhGeaDkvvdpeas.relyerlgskdktlklypglyHell 235
                  P l++ +e D++ +++++ ++ ++++g   ++l+ ypg+ H  +
   KIR61752.1 254 PALVITAEYDPLREEGERyADRLRAAGV-PVELARYPGMIHGFF 296
                  89**********9988877777777776.9***********876 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   8.1e-05      0.24      61     126 ..     125     186 ..      62     197 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8.1e-05
  Chlorophyllase2  61 keiksaakvlnWlakgLesvlpeevepdlsklalsgHSrGgktafalalgkaktsl.kfsaligvdP 126
                      + ++  ++ + Wla++ +     e  +d ++la+ g S+Gg+ a+a++l +++     ++a + v P
       KIR61752.1 125 AAVHDCHAAVAWLAAHAD-----EFGADPDRLAVGGDSAGGNLAAAVTLLSRDGGGpALAAQLLVYP 186
                      667777888888888865.....7889999******************9877733335566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2631.24
//
Query:       KIR61753.1  [L=452]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-27   95.8   0.0    3.6e-27   95.5   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
      5e-05   22.3   0.1    0.00012   21.0   0.1    1.6  1  Aminotran_MocR   Alanine-glyoxylate amino-transferase
  ------ inclusion threshold ------
       0.22   10.8   0.5       0.84    8.9   0.1    2.0  2  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.0     6e-31   3.6e-27      53     363 .]     106     434 ..      63     434 .. 0.90

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 6e-31
                    HHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTE. CS
  Aminotran_1_2  53 lakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnk. 147
                    +a+ l  +e++++++e ++vv+ G++++  ++ ++l++ p d+ l+ +pty   + ++rl +++v++++       ++dl +l e++++a ++   
     KIR61753.1 106 VARNLAVDEEITVDPE-SIVVTVGCQEAMLLVLRALRAGPADVLLAVAPTYVGLTGAARLVDLPVRPVA---GGPAGVDLADLREQVRRARAEGLr 197
                    455555678999****.****************************************************...56789*************999998 PP

                    TEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH...... CS
  Aminotran_1_2 148 ktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgna...... 237
                    ++ + +     NP+G+ ++l++ + lldla +  lll+ D  Y+ f  +  + v+t+  ++++  ++ +gs++K   l+G RvGy+++++      
     KIR61753.1 198 PRACYVMPDFANPSGASIDLADRRRLLDLAAAEDLLLIEDNPYGLFHADGAGRVPTLKALDTGRRVVYLGSFAKT-VLPGARVGYVVADQrvrdad 292
                    8999999******************************************8877777888888888*********8.59**********999***** PP

                    ....HHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHS.....TEEEECCSCSSEEEEEETHHCHHHH CS
  Aminotran_1_2 238 ....avvsqlrklsrpfls..ssllqaavaaalsdallkqs..eleemrqrlqkrrkelrdeLael.....glkvlasqsgmflltdlsaetakel 320
                         +++ql+k+++ +++  s+++qa+v  al +         ++ +r+ ++++ ++l+++La+       + +  + +g+f ++ ++   +++l
     KIR61753.1 293 gtvgPLADQLAKIKSMVTVntSAIAQAVVGGALLAHGCS-LvaANTRERAAYARNLRHLVNGLARRfpdpsPVRWNVPAGGFFAVVSVPFPVDDAL 387
                    ********************8888888888887776533.2359*******************999****9666666779*********999**** PP

                    HHHHHHTCTEEEEEGGGGTS....TTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 321 skkLleevgvyvtpgtsftv....pgrlRitvAglteeeleelveal 363
                     +  +e +gv+ tp+ +f+      + lR++++++t+ +++  +++l
     KIR61753.1 388 LRRSAEDYGVLWTPMAHFYDdtapVAALRLSISAVTPGQIDAGLDRL 434
                    ******************999998789**************999886 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   2.1e-08   0.00012     162     376 ..     187     407 ..     176     441 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.1e-08
                     HHHHHHHC-TTEEEEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-TTSS-BS.SSSS----HHHHHHHHT-TTSEEEEEESTTTS-T CS
  Aminotran_MocR 162 aveklvaedasvkGilavpkysnptGetiseevarrlaalkaaapdfrifaddayavhdlvaeedkdanivalardaGhpdrafvlastskitfa 256
                     +v++  ae    +  +++p ++np+G  i     rrl  l aaa d+ +  d+ y   +   ++      v+  +      r + l s +k  + 
      KIR61753.1 187 QVRRARAEGLRPRACYVMPDFANPSGASIDLADRRRLLDL-AAAEDLLLIEDNPYGLFHA--DGAGR---VPTLKALDTGRRVVYLGSFAKTVLP 275
                     56666666666678899**********************9.6789***********9987..44333...3333333344689999********* PP

                     TSS-EEEEE-HHHHHHHHHHHH...........HC-S---HHHHHHHHH.HHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSEEE--- CS
  Aminotran_MocR 257 GaGvafvassedniawlkkylG...........lqsiGpdkveqlrhvk.flkdyeGlealmrdhaeliapkfeavlevleaelggaevatwtep 339
                     Ga v++v +  + +++++  +G           + ++    + q+     +l +   l a   + ++  a  ++ + + l +++       w+ p
      KIR61753.1 276 GARVGYVVAD-QRVRDADGTVGpladqlakiksMVTVNTSAIAQAVVGGaLLAHGCSLVAANTRERAAYARNLRHLVNGLARRFPDPSPVRWNVP 369
                     ******9875.45555555555111000010004445555555544332133333355555666666677777888888888888889999**** PP

                     SBSS-EEEEESSS-HHHHHH.HHHHCTEE---TTTTSS CS
  Aminotran_MocR 340 rGGyfisldtldgvakrvvk.laeeaGvsltaaGatyp 376
                      GG+f  + +  +v +  ++  ae+ Gv  t+    y 
      KIR61753.1 370 AGGFFAVVSVPFPVDDALLRrSAEDYGVLWTPMAHFYD 407
                     *****999999999998875268889999998765554 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00014      0.84      42     145 ..     124     238 ..     115     250 .. 0.66
   2 ?   -1.5   0.0       0.2   1.2e+03     101     123 ..     302     324 ..     291     335 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00014
                      EEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-..EEE...EE-B-TTTSSB-GGGCGG.G--TTEEEEEE..B-GGGB---H CS
  DegT_DnrJ_EryC1  42 iavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelga..kpv...fvDvdpdtynidpaaiea.aitertkaIlp..VhlyGqvadm 127
                      + +  + +A++l+Lral +gp d ++ ++ t+v+   a++ + +  +pv   ++ vd +++  ++ +++a  + +r   ++p  ++  G++ d+
       KIR61753.1 124 VVTVGCQEAMLLVLRALRAGPADVLLAVAPTYVGLTGAARLVDLpvRPVaggPAGVDLADLREQVRRARAeGLRPRACYVMPdfANPSGASIDL 217
                      34445678*************************9887776665411555222344555555444444433135666666776556667777666 PP

                      H...HHHHHHHHCT-EEEEE- CS
  DegT_DnrJ_EryC1 128 d...alkaiaakhglkvieDa 145
                      +   +l ++aa+ +l +ieD 
       KIR61753.1 218 AdrrRLLDLAAAEDLLLIEDN 238
                      422257777888888888875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.2
                      GGGCGGG--TTEEEEEEB-GGGB CS
  DegT_DnrJ_EryC1 101 paaieaaitertkaIlpVhlyGq 123
                       a+i++ +t +t+aI  + + G+
       KIR61753.1 302 LAKIKSMVTVNTSAIAQAVVGGA 324
                      57999999999999988877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3590.71
//
Query:       KIR61754.1  [L=86]
Description: hypothetical protein TK50_29980 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00014   22.0   0.1    0.00018   21.7   0.1    1.5  1  DUF4177   Domain of unknown function (DUF4177)


Domain annotation for each model (and alignments):
>> DUF4177  Domain of unknown function (DUF4177)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1     1e-08   0.00018      28      60 ..      48      81 ..       7      84 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1e-08
     DUF4177 28 eilnelAkeGWrlvsii.pvkesrgvgaaesill 60
                + ln+ ++eGW+lvs   +v++ +g ++++ ++l
  KIR61754.1 48 AHLNRAGREGWELVSAAeDVNNVQGSTEVHRYHL 81
                679************9999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 641.47
//
Query:       KIR61755.1  [L=479]
Description: serine hydroxymethyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.1e-122  407.6   0.0    2.5e-93  312.9   0.0    2.2  2  SHMT           Serine hydroxymethyltransferase
    7.7e-06   25.3   0.0    1.4e-05   24.5   0.0    1.3  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.0   2.2e-30   1.9e-26       3     108 ..      20     121 ..      18     130 .. 0.96
   2 !  312.9   0.0   2.7e-97   2.5e-93     111     399 .]     155     427 ..     145     427 .. 0.97

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 2.2e-30
                 HHTHHHHHHHHHHHHHHHHSEE-STT-----HHHHHHHTSGGGG----EETTEESSST-HHHHHHHHHHHHHHHHHCT-STTTEEEE---SSHHHHHHH CS
        SHMT   3 esdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGcefvdeveelaqdrakelfkldpakwgvnvqplsGsqanla 101
                 +++p+va++i  e + q+e+++liasen++s+a l a+G  +++kyaeG  G+r+y Gc+ vd+ve la + a+elf++     ++ vqp+sG +anl 
  KIR61755.1  20 AVEPRVADAIGAELADQRESLKLIASENYASPATLLAMGNWFSDKYAEGTVGRRFYAGCQNVDTVEALAAEHARELFGAS----HAYVQPHSGIDANLV 114
                 67899***************************************************************************....9************** PP

                 HHHHHT- CS
        SHMT 102 vytalle 108
                  + a+l 
  KIR61755.1 115 AFWAILA 121
                 ****986 PP

  == domain 2  score: 312.9 bits;  conditional E-value: 2.7e-97
                 -EEEEESCTTTSTGGGT-BTSS-B-SHHHHHSEEEEE-B-TTTSSB-HHHHHHHHHHH--SEEEEE-SST-S---HHHHHHHHHHTT-EEEEE-GGGHH CS
        SHMT 111 drilgldladGGhlthGakveskkisassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevgayllvdmahiaG 209
                 +r+lg++l +GGhlthG++ +      s+k+f++ +y+ d++tglidyd++ + a+ef+P ++vaG say+r+++++ +reiad+vga+++vdmah+aG
  KIR61755.1 155 QRMLGMSLDAGGHLTHGFRPNI-----SGKMFDQRSYGTDPATGLIDYDRVAEAAREFRPLILVAGYSAYPRKVNFRIMREIADSVGATFMVDMAHFAG 248
                 699****************999.....************************************************************************ PP

                 HHHTTSS-...-GCCTSSEEEEESSSTT-S-S-EEEEEC-SEEEEETTTEEEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHCTSHHHHHHHHHH CS
        SHMT 210 lvaagvip...sPfeyadvvtttthktlrGprgglillrkgvksvdktgkevleelekkinsavfPglqGGPlnhviaakavalkealepefkvyqkqv 305
                 lva++v++   +P+++a++vtttthk+lrGprgg++l+                el+++++    P + GGPl hv+aakaval ea +p+f  y++++
  KIR61755.1 249 LVAGKVFTgdfDPVPHAHIVTTTTHKSLRGPRGGMVLCG--------------PELADQVDRGC-PMVLGGPLPHVMAAKAVALAEARRPDFADYAQRI 332
                 ******9744479*************************9..............789*****985.********************************** PP

                 HHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTS.STTTT-SEEEEESHHHHHTT--HHHHHHHHHHH CS
        SHMT 306 lknakalaealkekgyklvsgGtdnhlvlvdlrekgldGkraekvlekvnitankntvPgd.ksalvtsGlrlGtpaltsrgfkeedlekvakfi 399
                 ++na+alae l  +g +lv+gGtdnhlvl+d++  gl+G++ae++l    i +n+n+vP+d + a  tsG+r+Gtpalt+rg+++++++  a++i
  KIR61755.1 333 VDNAQALAEGLLRRGATLVTGGTDNHLVLIDVSGYGLTGRQAEQALLDSGIVTNRNAVPQDpNGAWYTSGIRIGTPALTTRGLGTAEMDATAELI 427
                 *************************************************************99*************************9988765 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.6e-09   1.4e-05     174     353 ..     229     412 ..     218     418 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.6e-09
                    HHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHH CS
  Aminotran_1_2 174 ldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls.ssllqaavaaalsdal 268
                     ++a++ ++  +vD+a+ ++    + +     ++++ p+ +iv++  +  +l G R G++l+ +++++q+ +    +l  + +   a+ a++ ++ 
     KIR61755.1 229 REIADSVGATFMVDMAHFAGLVAGKVF---TGDFDPVPHAHIVTTT-THKSLRGPRGGMVLCGPELADQVDRGCPMVLGgPLPHVMAAKAVALAEA 320
                    56688889999*****96665554544...6789999996666554.4557888888***************999999884444444444444433 PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHS.TEEEECCSCSSEEEEEETHH..CHHHHHHHHHHTCTEEEEEGGGGTS......TTEEEEECTTS-H CS
  Aminotran_1_2 269 lkqseleemrqrlqkrrkelrdeLael.glkvlasqsgmflltdlsae..takelskkLleevgvyvtpgtsftv......pgrlRitvAglte 353
                     ++ ++ + +qr+ ++++ l ++L +     v++   + ++l d+s +  t  ++ ++Ll+  g++  ++  +        ++ +Ri  ++lt+
     KIR61755.1 321 -RRPDFADYAQRIVDNAQALAEGLLRRgATLVTGGTDNHLVLIDVSGYglTGRQAEQALLDS-GIVTNRNAVPQDpngawyTSGIRIGTPALTT 412
                    .456********************99954445555588888889999999999999******.9999998888878888887778888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3322.90
//
Query:       KIR61756.1  [L=281]
Description: metallophosphoesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-17   65.3   0.0    1.6e-17   64.7   0.0    1.3  1  Metallophos    Calcineurin-like phosphoesterase
    9.8e-06   25.9   0.0     0.0056   16.9   0.0    2.1  2  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   1.8e-21   1.6e-17       3     204 .]       9     242 ..       7     242 .. 0.75

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 1.8e-21
                  EEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHHTSEEEEEC-TTSCHHHHHHHHHHHHHHH.HHHHEHHH CS
  Metallophos   3 ilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvkypipvylllGNHegfeeellnkygylgif.sepwrsda 99 
                  +l i+DlH       +++ +++++ l++++  d++l+aGD+ d+    ++ l ll++ ++   +v++++GNH+ ++  ++ +    ++   + +r+ +
   KIR61756.1   9 LLAISDLH-----VTYAENRAIVEGLRPRSPGDWLLVAGDVADTVADIEWALGLLSRRFA---KVVWAPGNHD-LWTPSSDP---VTLRgVARYRHLV 94 
                  589*****.....****************999************9777768888999999...9*********.33322222...2222255555555 PP

                  CEEETSEEEEEETTE...EEEEEEESECEEE........THHHHHHHHHHHSCHHHHCC....................HHHHHH........HHHHT CS
  Metallophos 100 evfnnlplaslgsgs...lkvlllhGgspel........lvsldklgslnleleapepg....................dewlkd........lekre 158
                  +v  +l ++     +   + v+  +Gg p l        ++++ + g  ++e   +e                      ++w +         l++r+
   KIR61756.1  95 DVCRALGVVT----PedpYPVWRGPGG-PALvvplfllyDYTWRPEGLDTREAALAEAYatgivctdeyllhpdpypsrQDWCAArlaetaarLDARD 187
                  5556666655....2235777777777.2223444566655555555555555555555556666665444444555666666668888********* PP

                  TCSEEEEEESSESS.........CSSSCSCCHHHHHHHHHHTTESEEEEESSSSE CS
  Metallophos 159 kadwvivlgHsply.........rgsgylfgdealedllkkygvdlvisGHtHvy 204
                  +a ++++++H pl              ++ g +a++d+  +yg+ + ++GH H +
   KIR61756.1 188 PALPTVLVSHWPLVreptrilryPIFAQWCGTDATADWHVRYGAAAAVYGHLHIP 242
                  *****************************************************85 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.3e-07    0.0056       3      63 ..       9      78 ..       8     103 .. 0.75
   2 !    7.2   0.0    0.0006       5.3     111     140 ..     225     252 ..     165     273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.3e-07
  Metallophos_2  3 laiiSDlHsnldaleavlealkevgv.daiihaGDleeeepevleellela.....pvlaVrGNnD....e 63
                   l++iSDlH  +++ +a++e l+  ++ d +++aGD+ + +   +e++l l+     +v+  +GN+D    +
     KIR61756.1  9 LLAISDLHVTYAENRAIVEGLRPRSPgDWLLVAGDV-ADTVADIEWALGLLsrrfaKVVWAPGNHDlwtpS 78
                   689****************9999876699******8.333334555554445556999999*****54441 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0006
  Metallophos_2 111 llkeaeegsdvvvcGHtHvpevekeggvlv 140
                       +  +g++ +v+GH H+p+ + ++gv++
     KIR61756.1 225 WHVR--YGAAAAVYGHLHIPRTTWHDGVRF 252
                    4445..678899**********99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2183.33
//
Query:       KIR61757.1  [L=166]
Description: hemerythrin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-14   52.8   9.1    6.1e-14   52.8   9.1    1.7  2  Hemerythrin     Hemerythrin HHE cation binding domain
  ------ inclusion threshold ------
      0.028   12.7   0.7      0.032   12.5   0.7    1.1  1  SpecificRecomb  Site-specific recombinase
      0.071   12.1   0.2        5.6    5.8   0.1    2.1  2  MeaB            Methylmalonyl Co-A mutase-associated GTPase M


Domain annotation for each model (and alignments):
>> Hemerythrin  Hemerythrin HHE cation binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   9.1     1e-17   6.1e-14       3     131 .]       6     124 ..       4     124 .. 0.94
   2 ?   -1.0   0.0      0.42   2.5e+03      81     101 ..     134     153 ..     130     165 .. 0.49

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 1e-17
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH..CCC.HHHHHHHHHHHHHHHHHHHHHHHHCHTCGG CS
  Hemerythrin   3 vealdeeHralrallerlraladaaaevhgalrklaelldelvdeleaHhaaEEellfPlle.drpggravldvlereHdeirelleelrellkglee 99 
                  + +l+e+H+++r+l+++ +++ d +a      ++ ++l++++ ++l  H   E+e+++P+++   p+ ++++ +  +eH++++ l  el++  ++ + 
   KIR61757.1   6 IVVLKEDHKEMRRLFRAFQDAQDGLA------SQRQKLVGQILEALTVHTCLENEVMYPEVRkLLPDLEDDILESYEEHHVADLLCAELATMDADDD- 96 
                  6689*******************975......6779******************************************************7777766. PP

                  STCHHHHHHHHHHHHHHHHHHHHHHHTHHHHH CS
  Hemerythrin 100 psaaafaelleeladllreHiakEesilfpll 131
                       f  + ++l++ +++H+++Ee+++fp++
   KIR61757.1  97 ----HFNAKTTVLIENVEHHVEEEEQEWFPKV 124
                  ....7*************************86 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.42
                  HHHHHHHHHHH.HHCHTCGGST CS
  Hemerythrin  81 deirelleelr.ellkgleeps 101
                  +ei+e++ +lr  + ++++  +
   KIR61757.1 134 QEIGERMLALRaDAPRSPT--A 153
                  5666666666644444444..2 PP

>> SpecificRecomb  Site-specific recombinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.7   5.4e-06     0.032     108     206 ..       3     100 ..       1     129 [. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.4e-06
  SpecificRecomb 108 eDaewlealddetlarLlelleeeeeeeeeaaeklreellealevlsvqiaalglepelrrrlpeleeeespFlalqrelealleayeaaledee 202
                     +Da  + + d+++++rL+++++++++  +++++kl  ++leal+v ++ +  + + pe+r++lp+le++    ++ ++ ++ l+++ ++++ d++
      KIR61757.1   3 TDAIVVLKEDHKEMRRLFRAFQDAQDGLASQRQKLVGQILEALTVHTC-LENEVMYPEVRKLLPDLEDDILESYEEHHVADLLCAELATMDADDD 96 
                     788899999***********************************9887.67799**********9999888877777777777777776444444 PP

  SpecificRecomb 203 eaee 206
                     + ++
      KIR61757.1  97 HFNA 100
                     4433 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0026        15     170     211 ..       4      45 ..       2      56 .. 0.87
   2 ?    5.8   0.1   0.00095       5.6     169     213 ..      86     130 ..      79     147 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0026
                 SEEEEE---HHHHHHHHHHHHHHHHHCSTTBTTB--EEEEEB CS
        MeaB 170 DiivvnkaDkkeaekaarelraaleleeekekeWrpkvlkts 211
                 D ivv k+D+ke ++  r ++ a++ + +++++   ++l++ 
  KIR61757.1   4 DAIVVLKEDHKEMRRLFRAFQDAQDGLASQRQKLVGQILEAL 45 
                 899********************9999988888887777665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.00095
                 -SEEEEE---HHHHHHHHHHHHHHHHHCSTTBTTB--EEEEEBCC CS
        MeaB 169 aDiivvnkaDkkeaekaarelraaleleeekekeWrpkvlktsav 213
                 a++  ++ +D +  +k++  ++++ +  ee+e+eW pkv ++ + 
  KIR61757.1  86 AELATMDADDDHFNAKTTVLIENVEHHVEEEEQEWFPKVREALGR 130
                 5566666677666677788899999999999********987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1056  (0.058899); expected 358.6 (0.02)
Passed bias filter:                      688  (0.0383736); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1224.17
//
Query:       KIR61758.1  [L=494]
Description: peptidase S8 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-44  152.1   8.3      3e-44  151.5   8.3    1.2  1  Peptidase_S8  Subtilase family
  ------ inclusion threshold ------
       0.14   12.6   0.8       0.39   11.2   0.3    2.1  2  DUF4350       Domain of unknown function (DUF4350)
        2.2    8.8   5.0         97    3.5   5.0    2.8  1  DUF4179       Domain of unknown function (DUF4179)


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.5   8.3   4.9e-48     3e-44       3     282 ..     153     447 ..     151     472 .. 0.85

  Alignments for each domain:
  == domain 1  score: 151.5 bits;  conditional E-value: 4.9e-48
                   T-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-SST CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   3 gvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvldt 99 
                   +v+v+vlD+G+++shpdl +++  +         + + ++g+ ++tt+  w+ +       HGthvAG++aa   +  ++ gvapg+k+++vkv+++
    KIR61758.1 153 DVVVGVLDSGISSSHPDLASQIARD---------KSTSCVGGVTDTTEAAWNPTTSD----HGTHVAGTIAAA-INGVGVTGVAPGVKVAAVKVVND 235
                   79*****************554443.........33449999*********999987....************.99999****************88 PP

                   TSB-HH..HHHHHHHHHHHHCT-SEEEE-EE..........SCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HH................ CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
  Peptidase_S8 100 sggsmetgteliraieeaaedkvdvinmslg..........estslpktgrsiealainravnkkgvlvviSaGNngktgs................ 170
                   +g      ++ + ++ +aae+++++ n+s+           ++ ++p +  + +  ai++ + +kgvl v+SaGN++ +                  
    KIR61758.1 236 DGYIFP--EAAVCGFVWAAEHGMQLTNNSYYidpwelncrnDARQRPVWQAVQR--AIRYSQ-SKGVLNVASAGNSNYDLAhkitdegspnngtpet 327
                   887765..99999*****************977777777666666666666666..******.99************44444555555566666766 PP

                   .EEE-TTCEECTTTSTTCEEEEEESTTSSB-TT--B-TT.......-EEEE-S-.CCCCCCCCCHHHTTTHH...........EEEE-SHHHCHHHH CS
                   .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxx RF
  Peptidase_S8 171 .slqagspvgtpstsknvitvgayttegkiapfSsrGpssdgklkpdivapGgn.ivstwsrqsnnsaglss...........yqsmsGTSmAsPna 254
                    +  +++    p+ + +v+tv+a+ + g+ +++Ss+G  +     +d++apGg+  ++t +++s++++   s             +++GTSm+ P+a
    KIR61758.1 328 rENLTNACLDLPAEAPGVVTVSAVGPTGDKSYYSSYGQGV-----VDVTAPGGDtRFRTQGTRSTSTDAILSttfntatrtngWGYKQGTSMSGPHA 419
                   666677778889999************************9.....7********75555555554444444489*********999*********** PP

                   HHHHHHHHHHHTT--HHHHHHHHHCCS- CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 255 agaaAlllsalpkltpetvraallntAq 282
                   +g+aAl lsa+p +tp ++ + l++tA 
    KIR61758.1 420 TGVAALALSAHPGMTPGQLASFLERTAV 447
                   ***************************5 PP

>> DUF4350  Domain of unknown function (DUF4350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   6.6e-05      0.39      30      62 ..      31      59 ..      12      66 .. 0.70
   2 ?   -2.9   0.0       1.7   9.9e+03      11      36 ..      83     109 ..      82     117 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.6e-05
     DUF4350 30 alegedgtllvvapdlrlteeelaallewvarG 62
                a  g+d+t+lv+ap++ +t++ +a+    va+ 
  KIR61758.1 31 AAVGPDTTFLVLAPQGATTDAAAAR----VAAA 59
                44569**********9999843333....3333 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.7
     DUF4350  11 aelLeaqGvevrrvrkpfd.alegedg 36 
                 a+  + +Gve  ++++ +  al+++++
  KIR61758.1  83 ASAVKGAGVESVAATTGLGsALDEGET 109
                 666677788888888855548877655 PP

>> DUF4179  Domain of unknown function (DUF4179)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   5.0     0.016        97       5      45 ..       3      98 ..       1     117 [. 0.75

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.016
                XXXXXXXXXXXXXXX......................................................XXXXXXXXXXXXXXX..--SS-HHHHT CS
     DUF4179  5 rikkvaaaaaalvll......................................................llssrllspalAsaln.pvigslfekl 45
                ++++ ++aaa +v+l                                                      +l++r ++p +Asa++  +++s+ + +
  KIR61758.1  3 NLRRKTLAAASAVTLgvglaltgglapaaavgpdttflvlapqgattdaaaarvaaangtvvasyhqigVLVARSANPDFASAVKgAGVESVAATT 98
                566677777777777777777777777777777777777777777777777777778888899999999999999999999999777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3679.33
//
Query:       KIR61759.1  [L=287]
Description: carbohydrate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-39  135.7   0.5    2.1e-39  135.4   0.5    1.1  1  Carb_kinase   Carbohydrate kinase
  ------ inclusion threshold ------
      0.028   13.8   0.1       0.19   11.1   0.1    2.0  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase


Domain annotation for each model (and alignments):
>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.4   0.5   2.4e-43   2.1e-39       1     243 [.      31     281 ..      31     282 .. 0.93

  Alignments for each domain:
  == domain 1  score: 135.4 bits;  conditional E-value: 2.4e-43
                  EEEEE-BTTCHHHHHHHHHHHHCTT-SEEEEEESSTTTCCCCTTTTTCEECCTT...........HTTTS...--SSS-SEEEE-TT-SSSHCHHHHC CS
  Carb_kinase   1 vlvigGsedytGAallaalaalrlgaglvsvateseaiavlksylpevivhpll...........edeqakileklerldavviGpGLgrdekikkll 87 
                  vlv+gGs  ++GA lla+ aalr+gag+++ a+ +  +a+l  ++pe++v  l+             +      +   +d+v++GpGL   +++ +ll
   KIR61759.1  31 VLVVGGSRFTPGAVLLAGVAALRAGAGVLQLAAAESTAAALSIQVPEALVVGLPetgdgavagrpG-D--PLDGLVADADVVAVGPGLTDIDATGELL 125
                  79****************************************************988777654321.1..223455689******************* PP

                  HHHCCCCS-...EEEEGGGGGSGGGG....TTTTSSEEEE--HHHHHHHCTTTCHHCCSHHHHHHHHHHHHTTEEEEESTTSEEEECTTEEEEE---- CS
  Carb_kinase  88 eevlekdep...lviDAdgLnllaqkne.lserkaeviLTPhkkEfkrLlkaivkkeddrlelarelaqklnavvllkgekdvivspegevlinstgs 181
                  + vl++      lv+DA +L  l++  + l     +v+LTP+  E   Ll+     +dd    a+ela+++ avv l g+   i++p+g ++  + g 
   KIR61759.1 126 RGVLDAAPKqtaLVLDAYALGALSHAPDlLVGSGRPVVLTPNLTEATHLLGRDP--GDDLDAEAAELARRYDAVVSLYGH---IAAPDGRCWREESGD 218
                  ***996544556**************99999999*****************999..9********************996...9************** PP

                  GGG-STTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHHHHCCCT-T.S-HCHHHHHHHC CS
  Carb_kinase 182 salakGGsGDvLaGligalLaqneasyeaaiaaawlhgaasdeaaekkgv.gmlatelskiip 243
                  ++l + GsGDv aGl+++lL+  +++++aa+ aa++h+ +++++  + g+ g la el+++ip
   KIR61759.1 219 AGLGTSGSGDVRAGLLAGLLSRGAEPAQAACWAAFAHAVSGQRLVPRFGRiGFLARELLDEIP 281
                  ************************************************************998 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   2.1e-05      0.19     122     166 ..     163     204 ..     158     257 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.1e-05
                   EEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS CS
  Phos_pyr_kin 122 vitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghl 166
                   v+tPNl Ea +Llg++    +d+++ a +l++   +aV+   gh+
    KIR61759.1 163 VLTPNLTEATHLLGRDPG--DDLDAEAAELARRY-DAVVSLYGHI 204
                   89************6655..56667777777753.4444444454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2091.78
//
Query:       KIR61760.1  [L=678]
Description: acyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-25   88.3  17.5    6.5e-25   87.9  17.5    1.1  1  Acyl_transf_3    Acyltransferase family


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9  17.5   3.6e-29   6.5e-25      46     332 ..      17     315 ..       1     323 [. 0.84

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 3.6e-29
                    xxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxx RF
  Acyl_transf_3  46 ggfgvplFFllSGffla......amlyrrrglsklikrRilrlliplliwllliillialvaghiqanasanvtlfdet...........kglmfl 124
                    g  gv++FF++SGf+++       +++ r +l+ ++ rR++rll +  ++l++ +ll++l    + +   a++ ++ +            ++ +  
     KIR61760.1  17 GFAGVDVFFVISGFLITgllvaeLERTGRISLPGFYARRAKRLLPAAAVVLVASLLLTWLLLPRTRWADTAWDVVASAAyglnwrlavqaTDYWAA 112
                    6789************************************************************************888***********9999** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxx RF
  Acyl_transf_3 125 lfefpatghlWfLwalfvlylllpll......lrllrkvrkshlllllilllllslvfirhelfgpatsvgllplpsvla....llfflfGallad 210
                    +    ++ h+W+L ++ ++yl  pll      l   r++r+  l++ ++l++l s+ +  h+     t     p p+++     l+ +++G+ +a 
     KIR61760.1 113 DAAPSIVQHFWSLGVEEQFYLGWPLLllglavLGGRRRLRRGALMAGFALVALPSFAWSVHTS---QTD----PGPAYFVtttrLWELALGGAVAI 201
                    **************************9995544444555555555555555555444444444...333....23444444566************ PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 211 addrdrnlsrglkislllsllllalillalfgqtdggglvasvliqsaslllvslgimllllllfalpsrsafk.....llrylgkiSygiYliHl 301
                    a  r  +l+r l ++++++ l+++++ ++l             +   + +ll ++g+++++  + a  ++  +       +r  g +Sy++Yl+H+
     KIR61760.1 202 AGTRVHRLPRPLAAVIAWAGLATVAASAFLVDPD--------RAFPGYQALLPTVGTAAVIAGAQAAGRFGPAGalgwrPIRAVGALSYSLYLWHW 289
                    **********************************........8999999999999999999999999999977777788***************** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 302 pllmllqkllrdwglnlgevlllvlllvvsv 332
                    pll + +  +   +++     +++ ++ +s 
     KIR61760.1 290 PLLIAAEARFGELSTQ-----AALGVVALSA 315
                    *******999999555.....3333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4488.91
//
Query:       KIR61761.1  [L=323]
Description: ATP-dependent DNA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.037   14.1   0.0       0.89    9.6   0.0    2.1  1  DNA_primase_S  DNA primase small subunit


Domain annotation for each model (and alignments):
>> DNA_primase_S  DNA primase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0     5e-05      0.89      30     176 ..     166     267 ..     147     268 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 5e-05
                    HHHHHH-----GGGEEEEE--SEEEEEEE--TTEEES-HHHHHHHHHH..................................HCHHHHCT------ CS
  DNA_primase_S  30 vldellredfgfkdilwvfsgrrGfHcwvsdkdarpltdeeraaivnylnlyrplhpflsrsmlkivkpvveeiileeqdpfeikkllrllpdksl 125
                     l+ +l  ++g     + ++g+rG+H++ s +  + ++d +ra ++                                      ++l+r+lp  + 
     KIR61761.1 166 ELRAVL-AELGLV-GYPKTTGGRGLHVYLSIEPRWGFGDCRRAVLA------------------------------------LGRELQRRLPHLVT 223
                    555555.556653.66789999999999999999999999999988....................................44555555555555 PP

                    --..................-----------------....---.------. CS
  DNA_primase_S 126 rekkkweakedivlvllyprldeqvtkgikhllkapfcihgktg.nvcvpld 176
                    +      ++ +++ +  ++++++    +++h++++ ++i++ +   v++pld
     KIR61761.1 224 TT-----WWREQRDRPVFVDYNQM---SRDHTMASAYSIRPTPAaLVSAPLD 267
                    55.....55555555555555555...5666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2378.05
//
Query:       KIR61762.1  [L=168]
Description: AsnC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-14   53.5   0.6      2e-14   52.8   0.6    1.4  1  HTH_24          Winged helix-turn-helix DNA-binding
    1.4e-14   53.6   4.4    2.8e-14   52.6   4.4    1.6  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    2.8e-10   40.0   0.4    4.9e-10   39.2   0.1    1.6  2  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    2.5e-05   24.0   1.6      4e-05   23.4   0.3    1.9  2  MarR_2          MarR family
      3e-05   24.0   0.4    6.1e-05   23.0   0.4    1.6  1  HTH_20          Helix-turn-helix domain
    0.00031   20.6   0.1    0.00051   19.9   0.1    1.3  1  HTH_11          HTH domain
    0.00057   19.7   0.0     0.0016   18.3   0.0    1.7  2  TrmB            Sugar-specific transcriptional regulator TrmB
    0.00081   19.3   0.0     0.0013   18.6   0.0    1.4  1  MarR            MarR family
     0.0083   16.5   0.1        1.3    9.4   0.0    2.3  2  Rrf2            Transcriptional regulator
  ------ inclusion threshold ------
      0.032   14.2   0.0      0.055   13.4   0.0    1.4  1  GYD             GYD domain
      0.049   13.4   0.2       0.12   12.1   0.2    1.6  1  HTH_IclR        IclR helix-turn-helix domain
      0.066   13.1   0.0       0.12   12.3   0.0    1.4  1  RuvB_C          RuvB C-terminal winged helix domain
      0.075   12.7   0.0       0.15   11.7   0.0    1.5  1  HTH_50          Helix-turn-helix domain
       0.12   12.5   0.1        0.5   10.5   0.0    2.0  2  HTH_7           Helix-turn-helix domain of resolvase
       0.17   12.1   2.0       0.21   11.7   0.7    1.8  2  HTH_28          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.6   1.7e-17     2e-14       1      48 []      22      69 ..      22      69 .. 0.98

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 1.7e-17
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                lde dr+IL +L +++ris+r LAer+++S+++  +r++rL ++G+I+
  KIR61762.1 22 LDEVDRRILDELARDGRISIRTLAERVHVSRTNAYARVERLLRDGVIT 69
                79*********************************************6 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   4.4   2.4e-17   2.8e-14       1      41 [.      22      62 ..      22      63 .. 0.98

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 2.4e-17
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrL 41
                   LDe+Dr+IL++L +d+Ris + LAerv++S++ + +Rv+rL
     KIR61762.1 22 LDEVDRRILDELARDGRISIRTLAERVHVSRTNAYARVERL 62
                   8***************************************9 PP

>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       7.3   8.7e+03       5      18 ..      50      61 ..      47      65 .. 0.40
   2 !   39.2   0.1   4.1e-13   4.9e-10       8      74 ..      95     158 ..      88     159 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 7.3
                    E-GGGTTHHHHHHH CS
  AsnC_trans_reg  5 lepghpeqleefee 18
                    +++ +  ++ ++e+
      KIR61762.1 50 VSRTN--AYARVER 61
                    33222..3444444 PP

  == domain 2  score: 39.2 bits;  conditional E-value: 4.1e-13
                     GGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEE CS
  AsnC_trans_reg   8 ghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivle 74 
                     +   + +e+ ++la++ +V+++  ++G++d l+ v+++d++ l++++ ++++ + gv +t++ +v+ 
      KIR61762.1  95 N---TWREVSAELARVRYVEHVALLSGEHDVLALVRAPDNATLRDVVLDRVQGIAGVLSTRSWLVFD 158
                     3...4899******************************************************99975 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.3   3.4e-08     4e-05       7      52 ..      26      69 ..      21      80 .. 0.91
   2 ?   -1.1   0.0       1.5   1.8e+03       7      23 ..     119     133 ..     114     146 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3.4e-08
                HHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2  7 qarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52
                ++r+L +L+r ++  ++++ la+r ++s+ ++  +++rL + G ++
  KIR61762.1 26 DRRILDELARDGR--ISIRTLAERVHVSRTNAYARVERLLRDGVIT 69
                689********98..****************************995 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.5
                 HHHHHHHHHCTTTSEEE CS
      MarR_2   7 qarvLaaLgrrpgrdlt 23 
                 +++vLa +++ +    t
  KIR61762.1 119 EHDVLALVRAPDN--AT 133
                 7899988876554..44 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.4   5.1e-08   6.1e-05       9      56 ..      23      70 ..      18      74 .. 0.95

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 5.1e-08
                -HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20  9 hPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvev 56
                ++v rril++Lar++  +   laer+ +s+++++ +++ L + g +++
  KIR61762.1 23 DEVDRRILDELARDGRISIRTLAERVHVSRTNAYARVERLLRDGVITG 70
                7899****************************************9986 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   4.3e-07   0.00051       4      44 ..      28      67 ..      26      75 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.3e-07
      HTH_11  4 qilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                 il  L + +g is+ +LAe+ +vSr+  + ++++L   gv
  KIR61762.1 28 RILDEL-ARDGRISIRTLAERVHVSRTNAYARVERLLRDGV 67
                799999.99999***********************988884 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.3e-06    0.0016       7      53 ..      23      69 ..      21      79 .. 0.89
   2 ?   -2.1   0.0         3   3.6e+03      13      32 ..      86     104 ..      84     108 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.3e-06
                HHHCCCHCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEE CS
        TrmB  7 seyEakvYlaLlklgpatadeiaeelgvprskvYevLrsLedkGlVe 53
                 e + ++   L + g+ +++++ae++ v+r+++Y  +++L++ G+++
  KIR61762.1 23 DEVDRRILDELARDGRISIRTLAERVHVSRTNAYARVERLLRDGVIT 69
                566777788899999*****************************986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3
                 HCHHHHHHCCCHHCHHCCCT CS
        TrmB  13 vYlaLlklgpatadeiaeel 32 
                 +Y+aL   ++ t +e++ el
  KIR61762.1  86 AYIALT-IQQNTWREVSAEL 104
                 777776.4456777777766 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.1e-06    0.0013       7      48 ..      28      69 ..      22      72 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.1e-06
                HHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  7 viLrilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                +iL  l++ g +s+  La++++vs++++   + rL ++G i+
  KIR61762.1 28 RILDELARDGRISIRTLAERVHVSRTNAYARVERLLRDGVIT 69
                79*************************************986 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0011       1.3      21      58 ..      34      71 ..      27      74 .. 0.84
   2 ?    4.9   0.0     0.027        33      36      80 ..      91     138 ..      81     140 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0011
                STCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        Rrf2 21 eeeepvsseeiaerqnispsylekilakLrkaglvksv 58
                ++++ +s++++aer+ +s++ +   +++L + g+++  
  KIR61762.1 34 ARDGRISIRTLAERVHVSRTNAYARVERLLRDGVITGF 71
                445569***************************99865 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.027
                 TS-HHHHHHHHHHHHHTTSEEEE...TTT-TCEEESSHCCCSBHHHHH CS
        Rrf2  36 nispsylekilakLrkaglvksv...rGkgGGyrLakppeeItlldvv 80 
                  i+++  + + a+L++  +v+ v    G +  ++L ++p++ tl dvv
  KIR61762.1  91 TIQQNTWREVSAELARVRYVEHVallSGEHDVLALVRAPDNATLRDVV 138
                 577888888999999999988763336999999*************98 PP

>> GYD  GYD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.6e-05     0.055      37      67 ..     110     140 ..      86     163 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.6e-05
         GYD  37 leslyatlGeyDvvvivEapDdetaaalsla 67 
                 +e++ +  Ge+Dv+++v apD++t   + l 
  KIR61762.1 110 VEHVALLSGEHDVLALVRAPDNATLRDVVLD 140
                 77888899****************9999885 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2    0.0001      0.12       7      47 ..      28      67 ..      27      69 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
                HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
    HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGy 47
                +iLd la+ ++  +++ lA+r ++++++++  +  L + G 
  KIR61762.1 28 RILDELARDGR-ISIRTLAERVHVSRTNAYARVERLLRDGV 67
                69999**9999.8*****************99999998886 PP

>> RuvB_C  RuvB C-terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0    0.0001      0.12       4      50 ..      22      64 ..      19      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
                --HHHHHHHHHHHHT.TT--B-HHHHHHHTT--HHHHHHTTHHHHHH CS
      RuvB_C  4 LdeldikyLkllkekfkggpvglktlaailgeeketiedviEPyLlk 50
                Lde d+++L+ l+   ++g ++++tla+ + +++++    +E +L +
  KIR61762.1 22 LDEVDRRILDELA---RDGRISIRTLAERVHVSRTNAYARVERLL-R 64
                89**********9...79********************9999854.5 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00012      0.15       9      44 ..      23      59 ..      21      62 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
      HTH_50  9 eefErelikkayek.YpStRklAkrLGvShtaiankl 44
                +e++r ++ ++ +    S+R+lA+r +vS t    ++
  KIR61762.1 23 DEVDRRILDELARDgRISIRTLAERVHVSRTNAYARV 59
                66777777777776245*************9766665 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00042       0.5      16      36 ..      32      53 ..      30      59 .. 0.90
   2 ?   -0.6   0.0       1.2   1.5e+03      10      22 ..      55      68 ..      53      69 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
                SSTTTT.--STTTSSSS---SS CS
       HTH_7 16 kLleeG.isiskIAkevnisRs 36
                +L ++G isi+++A++v +sR+
  KIR61762.1 32 ELARDGrISIRTLAERVHVSRT 53
                5778999**************8 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.2
                HHGGGGSSTTTT.- CS
       HTH_7 10 dinrvvkLleeG.i 22
                 ++rv +Ll++G i
  KIR61762.1 55 AYARVERLLRDGvI 68
                6899******9955 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7   0.00018      0.21       4      40 ..      28      66 ..      27      74 .. 0.85
   2 ?   -2.0   0.0       3.5   4.1e+03       8      22 ..      90     104 ..      88     106 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
      HTH_28  4 eiiklla.aGh.svreaArelgisrrtvyrWikryeegG 40
                +i+ +la +G+ s+r +A+++++sr+  y  + r+   G
  KIR61762.1 28 RILDELArDGRiSIRTLAERVHVSRTNAYARVERLLRDG 66
                78988886799******************9999988777 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.5
      HTH_28   8 llaaGhsvreaArel 22 
                 l +++++ re+++el
  KIR61762.1  90 LTIQQNTWREVSAEL 104
                 567889999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1223.52
//
Query:       KIR61763.1  [L=338]
Description: 2-oxoisovalerate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-45  155.2   0.0    2.1e-45  154.6   0.0    1.3  1  Transket_pyr     Transketolase, pyrimidine binding domain
      2e-38  131.1   0.1    7.4e-38  129.2   0.1    1.9  2  Transketolase_C  Transketolase, C-terminal domain
     0.0036   17.6   0.0      0.008   16.5   0.0    1.6  1  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.6   0.0   3.5e-49   2.1e-45       3     175 ..       4     177 ..       2     179 .. 0.98

  Alignments for each domain:
  == domain 1  score: 154.6 bits;  conditional E-value: 3.5e-49
                   EEHHHHHHHHHHHHHCTTTTEEEEESSTH..HHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGG..HHGGHHH CS
  Transket_pyr   3 iawrkaeaealaellkedpevvligaDva..ggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangA..qiyadqa 95 
                    +++ka++ ala  l++d++v+++g+Dv+  gg+f  + gl+  +g++r++d++++E++++gfavG+a++g l+++ve+qF  Fa +A  qi  + a
    KIR61763.1   4 TTMAKALNAALADALADDERVLVFGEDVGklGGVFRITDGLQARFGDKRCFDTPLAEAGIVGFAVGLAMSG-LRPVVEMQFDAFAYPAfeQIASHVA 99 
                   5899*******************************************************************.9************************ PP

                   HHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEE CS
  Transket_pyr  96 irsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksll 175
                   + +++++g l v++v+r p+  g  G eh+  + ea+++++pglkvv+P++ a+++ llr+ai+  d++Pvv+++pk+l+
    KIR61763.1 100 KLRNRTRGALGVPMVIRVPYAGGIGGVEHHCDSSEAYYAHTPGLKVVTPATVADAYSLLREAIA--DPDPVVFLEPKKLY 177
                   ****************************************************************..899*********98 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.28   1.7e+03      48      76 ..       9      37 ..       5      73 .. 0.77
   2 !  129.2   0.1   1.2e-41   7.4e-38       1     124 []     193     314 ..     193     314 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.28
                     SHHHHHHHHHHHHHSEEEEEEEEESTTSH CS
  Transketolase_C 48 plDketilesvkktgrlvvveeavkrgGi 76
                      l  ++ ++++   + lv+ e+  k gG+
       KIR61763.1  9 ALNAALADALADDERVLVFGEDVGKLGGV 37
                     56667777777888888888888887776 PP

  == domain 2  score: 129.2 bits;  conditional E-value: 1.2e-41
                      TEEEEEETTSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSS CS
  Transketolase_C   1 gkaeilregkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdglda 94 
                      g+a+++r+g+d tl+ayG  v++aleAae++++eg++ eVvd+rt+ plD +ti++sv++tgr+vvv ea  + G+g+e+aa+++e++f+ l+a
       KIR61763.1 193 GRAVVRRPGTDATLIAYGPAVPVALEAAEAAREEGWDLEVVDVRTIVPLDDATIAASVRRTGRCVVVSEAQGFAGVGAEIAARVQERCFHALHA 286
                      7899****************************************************************************************** PP

                      EEEEEEE-SSSSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C  95 pvkrvggpdviepgsaeelekafgldaeki 124
                      pv+rv g d+  p++a++le+ +++ ++++
       KIR61763.1 287 PVLRVSGLDI--PYPAPMLEHTHLPGVDRV 314
                      **********..888889**9999988876 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.3e-06     0.008       2      81 ..     203     279 ..     202     298 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-06
                 SEEEEE-STHHHHHHHHHHHHHHTT--EEEEEES--BS--HHHHHHHSTT-SEEEEEE-S--TT-G-HHHHHHHHHTGGG CS
     PFOR_II   2 evvivamGsvagtaksavdelReegikvGllrlrtlrPFPeeelkellkkvkkvvvldrnisfgseGqlveevkaalkks 81 
                 +  ++a+G ++ +a +a++++Reeg ++ ++ +rt+ P   + ++  ++++ + vv+  +   g++G ++ e++a ++++
  KIR61763.1 203 DATLIAYGPAVPVALEAAEAAREEGWDLEVVDVRTIVPLDDATIAASVRRTGRCVVVSEAQ--GFAG-VGAEIAARVQER 279
                 6789********************************************9999999999888..5544.466777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2489.10
//
Query:       KIR61764.1  [L=466]
Description: branched-chain alpha-keto acid dehydrogenase subunit E2 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-72  241.2   0.0    1.2e-71  240.9   0.0    1.1  1  2-oxoacid_dh   2-oxoacid dehydrogenases acyltransferase (cata
    4.7e-17   61.6   0.2      8e-17   60.9   0.2    1.4  1  Biotin_lipoyl  Biotin-requiring enzyme
    1.3e-13   51.0   1.1      3e-13   49.9   1.1    1.7  1  E3_binding     e3 binding domain
  ------ inclusion threshold ------
      0.022   14.6   0.2      0.038   13.9   0.2    1.3  1  GCV_H          Glycine cleavage H-protein


Domain annotation for each model (and alignments):
>> 2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.9   0.0   2.7e-75   1.2e-71       5     232 ..     239     463 ..     235     464 .. 0.97

  Alignments for each domain:
  == domain 1  score: 240.9 bits;  conditional E-value: 2.7e-75
                   XXXXXXXXXXXXXXXXXXXX.XXXEEEEEEEEE-HHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHH-GGGG-EE.EESEEEE--SS--EEE CS
  2-oxoacid_dh   5 ervplsgirkaiakrlteskqeiphftlsdevdvtallelrkelkekeakeekakltlldflikavalAlkefPelnasvdeeekeivvkkhvniGv 101
                     vpl+g+r++ia++l++s +eip +t+++++d+tal+e r+ ++++    + a ++ll++l+++++  l++fP+lna+vd e ++iv+++ v++G+
    KIR61764.1 239 LVVPLTGVRRVIADKLSRSRREIPEVTIWVDADATALVETRRAINAATP--D-APVSLLALLARICLSGLRRFPQLNARVDTEGQRIVQSRGVHLGI 332
                   579*******************************************774..4.59****************************************** PP

                   E--------EEEE--GGG--HHHHHHHHHHHHHHHTTT---GGGTSS-SEEEE---------------TT-SEEEEE---.B--TTSTT-HT---EE CS
  2-oxoacid_dh 102 AvatprGLlvPviknadkkslleiakelkelaekaregklkpedleggtftisNlGmlGvtsftPiinppqvaIlgvgrikerpvvkegelvvrkvm 198
                   A +t+rGL+vPv+++a+ +++ e+a++l+  + +ar+g+l p+ l+ggtft+ N+G++Gv+++tPiin+p++a lgvgri ++p+v++g+l+vrkv 
    KIR61764.1 333 AAQTDRGLVVPVLRDAHLLTTRELAAALAGTTAAARAGTLPPARLTGGTFTLNNYGVFGVDGSTPIINHPEAALLGVGRIVDKPWVVDGQLAVRKVT 429
                   ************************************************************************************************* PP

                   EEEEEEETTT--HHHHHHHHHHHHHTT-HHXXXX CS
  2-oxoacid_dh 199 tlslsaDHRvidGaeaarFlntlkkllenpeell 232
                   +lsl++DHRv+dG  a  Fl+++++++e+p++l+
    KIR61764.1 430 QLSLTFDHRVCDGGVAGGFLRHVADCVEQPALLV 463
                   ******************************9875 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.2   1.8e-20     8e-17       3      73 .]       6      77 ..       4      77 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 1.8e-20
                   EEESSSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  3 iksPmiGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73
                   + +P++Ge  +e+ +ve+ v+vGd+V+ +q+++eve+ K++++++ p aG+v+ ++   G+t  vg++l++i
     KIR61764.1  6 FLLPDLGEGLTEAeIVEWRVAVGDTVTVDQSVVEVETAKAVVDVPCPYAGRVVALHGAAGETRPVGQPLITI 77
                   668******************************************************************997 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   1.1   6.7e-17     3e-13       3      36 .]     161     194 ..     159     194 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 6.7e-17
                 E-HHHHHHHHHCT--TTTS---CTTTBE-HHHHC CS
  E3_binding   3 AsPaaRklAkelGidLsdvkGtGpgGRItkeDVl 36 
                 +sP +R+lA+e+Gid++++ GtGpgG ++++DV+
  KIR61764.1 161 ISPIVRRLAREHGIDPATLRGTGPGGVVRRADVE 194
                 7********************************7 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   8.6e-06     0.038      40      73 ..      26      59 ..      15      67 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.6e-06
                -TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEE CS
       GCV_H 40 evgtkvkkgeslaavEsvKaasevyapvsGevve 73
                 vg++v  ++s+  vE+ Ka+ +v+ p  G vv 
  KIR61764.1 26 AVGDTVTVDQSVVEVETAKAVVDVPCPYAGRVVA 59
                489*****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3340.36
//
Query:       KIR61765.1  [L=559]
Description: Parallel beta-helix repeat-containing protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-19   70.1   8.5      1e-06   28.7   0.9    4.1  4  Beta_helix       Right handed beta helix region
    1.2e-08   35.0   4.2    1.6e-07   31.4   1.2    2.9  2  Pectate_lyase_3  Pectate lyase superfamily protein
    1.6e-07   30.8   0.0    0.00046   19.5   0.0    3.0  3  NosD             Periplasmic copper-binding protein (NosD)
  ------ inclusion threshold ------
       0.14   11.9   0.2       0.57    9.9   0.0    2.2  2  End_N_terminal   N terminal extension of bacteriophage endosi


Domain annotation for each model (and alignments):
>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0     1e-07   0.00045      27     124 ..     134     241 ..     116     246 .. 0.75
   2 !   28.7   0.9   2.3e-10     1e-06      59     143 ..     252     342 ..     247     352 .. 0.88
   3 !   27.4   1.4   5.8e-10   2.6e-06      36     128 ..     304     407 ..     303     430 .. 0.79
   4 !   10.2   0.0   0.00011       0.5      94     141 ..     482     532 ..     474     542 .. 0.44

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1e-07
                 EE-SSS-.EEES-EEES-SS-SEEE-TT-S-EEES-EEE---SEEE-TT--S--EEES-EEES-.........SS-SEE-T.T....-S--EEES-EEE CS
  Beta_helix  27 ylrgssnvvienneiannsgsGiyilgssnntisnntisdnngggialfgasnnlienneitdn.........ggsGiyln.y....ssnntienNiid 111
                  ++gs+ +  e n++a+    G++++++ + +++n +i++  ++g+ ++  + +lie+  +  +         gg+Gi +  +     +++ti n+++ 
  KIR61765.1 134 EIDGSGVAMAEYNYLAK----GLGLQYVVRGVFRNLYIHHTAATGLGCDFLQDSLIEGVVVVGCgrldngqemGGAGIGVGiGgwgtVERLTIANCTAL 228
                 45555555555666666....8888888************************************55555555533344444334667999********* PP

                 STT--SEE---TT CS
  Beta_helix 112 nnagsGividdss 124
                 +n+ +Gi+++ ++
  KIR61765.1 229 GNGTNGIFLELQK 241
                 ********98766 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 2.3e-10
                 EES-EEE---SEEE-TT--S--EEES-EEES-SS-SEE-TT.......-S--EEES-EEESTT--SEE---TT---EEES-EEES-SSEEEE CS
  Beta_helix  59 isnntisdnngggialfgasnnlienneitdnggsGiylny.......ssnntienNiidnnagsGividdsssnvtvtnNtitnnkgaGia 143
                 i +++  +n  +gi   ga++ +++ +++t n ++G+ ++             + +++id+n ++G+++ ++    tv++N+i++n+ +G +
  KIR61765.1 252 IVGCHSQGNR-FGISDWGADGLIVSACTMTGNLEAGFDVSAegtsgvaGRGGLLADCVIDGNVRDGVSMGNTPGPYTVRGNRISGNGAYGYH 342
                 7899999999.**************************99965766666666999*******************88888*********99965 PP

  == domain 3  score: 27.4 bits;  conditional E-value: 5.8e-10
                 EES-EEES-SS-SEEE-TT.-S-EEES-EEE---.........SEEE-TT--S--EEES-EEES-SS-SEE-TT.-S--EEES-EEESTT--SEE---T CS
  Beta_helix  36 ienneiannsgsGiyilgs.snntisnntisdnn.........gggialfgasnnlienneitdnggsGiylny.ssnntienNiidnnagsGividds 123
                 + +++i +n  +G+++ ++    t+++n+is+n+         g g +  +a  ++i+ n+++ ng + i+++    + ++ +N+i+nn+++    + +
  KIR61765.1 304 LADCVIDGNVRDGVSMGNTpGPYTVRGNRISGNGaygyhehdlGRGYHG-AATDVVIDSNDFWGNGLDAIRIDRpMVDAVLLHNRIRNNGRQCAGAYGG 401
                 5689999************8788*****************975455444.5677******************955999************555555555 PP

                 T.---E CS
  Beta_helix 124 s.snvt 128
                 +  +v+
  KIR61765.1 402 GgESVR 407
                 433333 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00011
                 SEE-T.T-S--EEES-EEESTT.....--SEE---TT---EEES-EEES-SSEE CS
  Beta_helix  94 Giyln.yssnntienNiidnna.....gsGividdsssnvtvtnNtitnnkgaG 141
                 Gi++n   ++ ti++N+i +n       +G+ i++ + ++   ++++ +n+ aG
  KIR61765.1 482 GITVNaHVDSATIRGNRIWDNHdertqTHGLWITERG-SC--VGCRVEDNDLAG 532
                 4444422333444444444444444444444444444.33..333333333222 PP

>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   1.2   3.5e-11   1.6e-07       3      68 ..      25      95 ..      23     255 .. 0.75
   2 ?    2.5   1.2     0.025   1.1e+02     151     188 ..     297     336 ..     198     366 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 3.5e-11
                     EGGGGT---EEEEE-HHHHHHHH..........HTSS-EEE-SEEEEESS-E.EE-SSEEEEES-TTTEEE CS
  Pectate_lyase_3  3 nVkdyGakgDGvtDdtaaiqkais....casatttgavVYfPaGtYlvsspi.ilksgvqLvGdgngrpvl 68
                     +++ yG++gDGvt+d+ a+ + ++      +a    +v+Y P+G Y ++      +sgv L+G+g g +  
       KIR61765.1 25 DATQYGLRGDGVTNDQPALAALVDrlgdGYAADGRARVIYCPPGIYSIRDAGtVWRSGVSLIGAGPGATRF 95
                     6799*******************99*97788888999***********8654389**********655544 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.025
                      SS--EEEEES-EEES-SS-SEEES..-EEEEEES-EEE-S CS
  Pectate_lyase_3 151 engsggflndlvfsglgdigiavg..nqqftvrnitfnna 188
                        g gg l d+v++g+ ++g+ +g  +  +tvr + ++++
       KIR61765.1 297 VAGRGGLLADCVIDGNVRDGVSMGntPGPYTVRGNRISGN 336
                      3467788899999999999999976677888888888873 PP

>> NosD  Periplasmic copper-binding protein (NosD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.047   2.1e+02     116     136 ..     220     241 ..     205     265 .. 0.69
   2 !   19.5   0.0     1e-07   0.00046      25     150 ..     248     392 ..     228     410 .. 0.77
   3 !    6.7   0.0   0.00085       3.8     127     175 ..     480     536 ..     476     554 .. 0.56

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.047
        NosD 116 ntisnNtis.nnnkGiflenss 136
                  ti+n t++ n  +Gifle ++
  KIR61765.1 220 LTIANCTALgNGTNGIFLELQK 241
                 5666667766667777766553 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1e-07
        NosD  25 egseisnneisnsrdgilldnssnntitgntienl.ryGihlenses.......ntiedntlssne.sGialmsssnn.tlenNtisnnen.......y 106
                 +g++i + + + +r gi  + +++  ++ +t++ + ++G  ++             + d+++++n  +G+++ ++ +  t+++N+is+n          
  KIR61765.1 248 RGYRIVGCHSQGNRFGISDWGADGLIVSACTMTGNlEAGFDVSAEGTsgvagrgGLLADCVIDGNVrDGVSMGNTPGPyTVRGNRISGNGAygyhehdL 346
                 77888999999999999999999999999999998855555555444556666699*********99*********999**********9955555442 PP

        NosD 107 Gi.llsdssnntisnNtis.nnnkGiflens.ssntitgNriesnqk 150
                 G  +  ++++  i  N ++ n  ++i++++   + ++ +Nri +n +
  KIR61765.1 347 GRgYHGAATDVVIDSNDFWgNGLDAIRIDRPmVDAVLLHNRIRNN-G 392
                 222344455589*******9**********96777888******9.3 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.00085
        NosD 127 nkGiflens.ssntitgNriesn.....qkiGilllssseg..ntiynNyFinnsen 175
                  +Gi++++  +s ti+gNri +n     q++G+++++ ++    ++ +N++ +n + 
  KIR61765.1 480 RAGITVNAHvDSATIRGNRIWDNhdertQTHGLWITERGSCvgCRVEDNDLAGNAVA 536
                 456666666566666666666665555555565544333222256666666655554 PP

>> End_N_terminal  N terminal extension of bacteriophage endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00013      0.57       3      30 ..      33      60 ..      31      65 .. 0.90
   2 ?   -3.1   0.0       1.5   6.8e+03      21      31 ..     328     338 ..     313     339 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00013
                    -EEEEE-HHHHHHHHHHS-TTS-EE-TT CS
  End_N_terminal  3 GDGvtdDtdalsevlaaapvgkkidGrG 30
                    GDGvt+D+ al +++     g   dGr 
      KIR61765.1 33 GDGVTNDQPALAALVDRLGDGYAADGRA 60
                    9**************9999999999985 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.5
                     -TTS-EE-TT- CS
  End_N_terminal  21 pvgkkidGrGl 31 
                       g++i G+G+
      KIR61765.1 328 VRGNRISGNGA 338
                     56899999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3841.65
//
Query:       KIR61766.1  [L=424]
Description: erfk/ybis/ycfs/ynhg family protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-42  144.1   0.6      8e-42  143.3   0.6    1.4  1  Big_10    Bacterial Ig domain
    9.3e-16   58.5   0.9      3e-15   56.9   0.0    2.0  2  YkuD      L,D-transpeptidase catalytic domain
  ------ inclusion threshold ------
      0.017   15.8   3.2        0.1   13.3   1.3    2.9  3  Big_5     Bacterial Ig-like domain
       0.18   11.3   0.0         31    4.1   0.0    2.7  3  TcfC      E-set like domain


Domain annotation for each model (and alignments):
>> Big_10  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.3   0.6   1.8e-45     8e-42       2     182 .]      53     238 ..      52     238 .. 0.95

  Alignments for each domain:
  == domain 1  score: 143.3 bits;  conditional E-value: 1.8e-45
      Big_10   2 kdvkpeepvtvtvedgkLtevsltdeeGkevegelsadktsWtsteklgygttYtltakakdadgkavektssftTv.apak.tvsatltpedgstvGv 98 
                 +dv +++++  +v++g++t v+ltd++G++v+ge  +d+tsW + ++l+ g+tYt + + ++++g+++++t++ftT+ +p+k  ++ tl+ + ++t+G 
  KIR61766.1  53 RDVPVSAEIGTSVAHGRVTGVRLTDDKGRQVAGEPREDGTSWVPGAPLAGGRTYTAEVTVTGDGGRTATRTTTFTTApKPTKpAITSTLYFTGNQTYGT 151
                 6899************************************************************************8445542467789999******* PP

      Big_10  99 gqpisikFdkpv..edkaavekalkvttspavegafaWlsd.sevdwRpkeYwkpgtkVtvkaklygvelgdgvygkedksvsftiG 182
                 ++p+++ Fd  v  e +aav+k+l v+t+p++ g+++Wl+d s+  +R+ ++w+pgtk++v+a+l+g+ +g+++ g+++++++ +iG
  KIR61766.1 152 AMPVTVAFDPGVpkEARAAVQKRLFVKTDPPQPGTWSWLEDgSQAYYRAPDFWRPGTKISVRAALEGLPIGKDLVGDAEHRATSKIG 238
                 **********998889*************************999*************************************999998 PP

>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3      0.36   1.6e+03      27      69 ..     110     143 ..     100     193 .. 0.66
   2 !   56.9   0.0   6.7e-19     3e-15       4     146 .]     243     360 ..     240     360 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.36
                 E-BEB..TTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTS CS
        YkuD  27 pvsvG..gkkegdreTPlGtfrikskvrnptwnvppsiarkeiyp 69 
                  +++G  g++   ++T ++t  +k         ++++++  ++y+
  KIR61766.1 110 VTVTGdgGRT--ATRTTTFTTAPK---------PTKPAITSTLYF 143
                 3677754444..677777777776.........333434333333 PP

  == domain 2  score: 56.9 bits;  conditional E-value: 6.7e-19
                 EEEETTTTEEEEEEETTEEEEEEE-BEBTTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTTCECCCCEEE-STTS-EE CS
        YkuD   4 ivvdlaeqrllvlyengklvlsfpvsvGgkkegdreTPlGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskvalgkvkfvfpngsgiyi 102
                 + +d a++++  ++++gklv++ pvs+G   +++++  +G++ i +k++++t    +++ ++++        + +d            ++  +++g +i
  KIR61766.1 243 VDIDNASKQM-SVFRDGKLVRRIPVSLG---KPSTPSSSGKMVIMEKHERTTFDTRGEPDGGYV-------VDVDD------------AQRLTWGGEFI 318
                 6788888566.999**************...66*******************555555444444.......33333............78899****** PP

                 EE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEEEE CS
        YkuD 103 HgtgapdlfergkgarrShGCirlseedakelyelvlvgtpvvi 146
                 H  +ap+ ++++  ++ ShGC ++s + a +l    +vg+ v +
  KIR61766.1 319 H--SAPWSEGDQGFTNVSHGCANVSAAAADWLMGITQVGDLVTV 360
                 *..77766544337888*********************999976 PP

>> Big_5  Bacterial Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.3   2.3e-05       0.1       2     108 .]      38     128 ..      37     128 .. 0.78
   2 ?    0.6   0.0       0.2   9.2e+02       3      81 ..     133     212 ..     131     236 .. 0.70
   3 ?   -1.8   0.0       1.2   5.3e+03      24      47 ..     240     267 ..     226     308 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.3e-05
       Big_5   2 ttaPtvvstsPadgatgvavnaeitvtFseavdastvtaatvialsdsettavtgsydasgktvtitpsaeLaanttYtvtitagikDlagnalaapyt 100
                 +t+P  v ++Pad + +v+v aei       v+ + vt    +  +d ++ +v+g      +     p a+La ++tYt+++t  ++   g +  a+ t
  KIR61766.1  38 VTPPPAVELTPADRTRDVPVSAEI----GTSVAHGRVTGV-RL--TDDKGRQVAGE--PREDGTSWVPGAPLAGGRTYTAEVT--VTGDGGRT--ATRT 123
                 58999999**********998777....556777888544.44..7999******9..899999999***************5..55555531..2333 PP

       Big_5 101 niewsFtT 108
                     +FtT
  KIR61766.1 124 ---TTFTT 128
                 ...56776 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.2
       Big_5   3 taPtvvstsPadgatgvavnaeitvtFseav...dastvtaatvialsdsettavtgsydasgktvtitpsaeLaanttYtv 81 
                 t P ++st   +g +   +  ++tv F+  v   + + v++  ++++ +++  + +     +g+++  +  + + ++t+ +v
  KIR61766.1 133 TKPAITSTLYFTGNQTYGTAMPVTVAFDPGVpkeARAAVQKRLFVKTDPPQPGTWS--WLEDGSQAYYRAPDFWRPGTKISV 212
                 67888888888887777777899999999997766666666666644333333333..336667777777666777776655 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.2
       Big_5  24 eitvtFseavdastvtaatvial....s 47 
                 +++v+ ++a ++++v  + ++++    s
  KIR61766.1 240 QVSVDIDNASKQMSVFRDGKLVRripvS 267
                 4444555555555554444444455332 PP

>> TcfC  E-set like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.007        31      45      67 ..     105     127 ..      98     128 .. 0.90
   2 ?    4.1   0.0    0.0072        32      14      33 ..     251     270 ..     239     273 .. 0.85
   3 ?   -2.7   0.0      0.93   4.2e+03      37      50 ..     292     305 ..     289     306 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.007
        TcfC  45 iYeveirvyengqvvrteqqkft 67 
                 +Y++e+ v ++g+ + t++++ft
  KIR61766.1 105 TYTAEVTVTGDGGRTATRTTTFT 127
                 7******************9997 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0072
        TcfC  14 rveiyRdgqLlstqnvnaGn 33 
                 ++ ++Rdg+L+++  v+ G 
  KIR61766.1 251 QMSVFRDGKLVRRIPVSLGK 270
                 6789***********99995 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.93
        TcfC  37 dtssLPsGiYevei 50 
                 dt+  P G Y v++
  KIR61766.1 292 DTRGEPDGGYVVDV 305
                 88888*****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2768.10
//
Query:       KIR61767.1  [L=339]
Description: strictosidine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-20   72.6   0.0    7.8e-20   70.8   0.0    1.8  2  Str_synth  Strictosidine synthase
      1e-15   58.0   0.0    3.3e-14   53.1   0.0    2.1  2  SGL        SMP-30/Gluconolactonase/LRE-like region
    2.7e-05   24.0   1.0        1.2    9.4   0.0    4.3  4  NHL        NHL repeat
  ------ inclusion threshold ------
        0.2   11.5   0.6       0.41   10.5   0.1    1.7  2  BAT        GAF and HTH_10 associated domain


Domain annotation for each model (and alignments):
>> Str_synth  Strictosidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.53   2.4e+03      32      75 ..      64     110 ..      57     115 .. 0.60
   2 !   70.8   0.0   1.7e-23   7.8e-20       5      83 ..     142     219 ..     138     222 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.53
   Str_synth  32 egdktGrllkyd...kstkvvkvlldkLyfanGialsedgsfvlvce 75 
                 +gd++Grl  +    +    ++ l++    + Gi l + + +++vc+
  KIR61767.1  64 SGDEDGRLWWWAadaPAGTPARLLAETGGRPLGIELDPRDGSLVVCD 110
                 56666666655411122334556666666677777777777777776 PP

  == domain 2  score: 70.8 bits;  conditional E-value: 1.7e-23
   Str_synth   5 vdeetgvlyftdsSskydrrqvllallegdktGrllkydkstkvvkvlldkLyfanGialsedgsfvlvcetamkrisr 83 
                 v+ + g +yftdsS+++ + +   +lle+ ++Gr+l y + t  + v+   Lyf+nGial++d+s ++ +et+++r+ r
  KIR61767.1 142 VARD-GTIYFTDSSDRFPLSHWKHDLLEHRPNGRVLAYHPGTGRTDVVTAGLYFPNGIALTPDESALILVETTTHRLLR 219
                 5555.9*********************************************************************9877 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.016        71      85     104 ..      48      67 ..      30      71 .. 0.81
   2 !   53.1   0.0   7.3e-18   3.3e-14      41     203 ..      92     254 ..      70     275 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.016
         SGL  85 llrfNDgvvdpdGrlwfGtm 104
                  + + D+vvdp+Gr++ G+ 
  KIR61767.1  48 AHGPEDVVVDPAGRVVSGDE 67 
                 57789**********99986 PP

  == domain 2  score: 53.1 bits;  conditional E-value: 7.3e-18
         SGL  41 e.svGaiaprkdgrlvvasksglalldlasgeletladeeedekpllrfNDgvvdpdGrlwfGtmgdeeakgeev.........galyrldpd.gkler 128
                 + ++G+  + +dg lvv+ +++ +l  + +g++++l+       p +  N ++v++dG ++f++ +d+   ++ +         g ++ ++p+ g++ +
  KIR61767.1  92 GrPLGIELDPRDGSLVVCDAYRGLLRVTPDGAVRELTGT--AP-PVHLANNAAVARDGTIYFTDSSDRFPLSHWKhdllehrpnGRVLAYHPGtGRTDV 187
                 367788888788********98888877999******98..45.8999*****************99988777667899******************** PP

         SGL 129 vlddltipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkgegepDGlavDaeGnvwvAvwg 203
                 v  +l +pNG+a++pd++ l+l++++t+++ ++d+  +gg   +++v+adl+ +   pD l+   +G +w+A+ +
  KIR61767.1 188 VTAGLYFPNGIALTPDESALILVETTTHRLLRVDL--PGG---AATVLADLPAY---PDNLCGVGDGTYWIALPS 254
                 ********************************999..566...78999**9999...8*************9875 PP

>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.2    0.0052        23       3      16 ..      50      63 ..      49      66 .. 0.92
   2 !    9.4   0.0   0.00026       1.2       3      27 ..      93     118 ..      92     118 .. 0.89
   3 ?   -1.4   0.0      0.67     3e+03       8      20 ..     141     153 ..     140     156 .. 0.80
   4 !    4.6   0.0    0.0083        37       1      25 [.     192     217 ..     192     219 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0052
                SEEEEEEETTTEEE CS
         NHL  3 yPhGvavdsnGdiy 16
                 P++v+vd+ G+++
  KIR61767.1 50 GPEDVVVDPAGRVV 63
                6***********97 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00026
                 SEEEEEEE.TTTEEEEEECCCTEEEE CS
         NHL   3 yPhGvavd.snGdiyVaDsenhrvqv 27 
                 +P G+ +d  +G ++V+D ++  ++v
  KIR61767.1  93 RPLGIELDpRDGSLVVCDAYRGLLRV 118
                 799***************99887765 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.67
                 EEETTTEEEEEEC CS
         NHL   8 avdsnGdiyVaDs 20 
                 av  +G iy +Ds
  KIR61767.1 141 AVARDGTIYFTDS 153
                 67799****8885 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.0083
                 BSSEEEEEEE.TTTEEEEEECCCTEE CS
         NHL   1 fnyPhGvavd.snGdiyVaDsenhrv 25 
                 +++P+G+a++ +   ++  ++ +hr+
  KIR61767.1 192 LYFPNGIALTpDESALILVETTTHRL 217
                 789*******6666666666666665 PP

>> BAT  GAF and HTH_10 associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   9.2e-05      0.41      68     114 ..      60     108 ..      50     131 .. 0.81
   2 ?   -3.2   0.0       1.6     7e+03     103     117 ..     220     234 ..     203     239 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.2e-05
         BAT  68 vrvvseeddgtlleltvs..gpslastlaehGgtvrsaeaedgrarlvv 114
                  rvvs ++dg l+ ++ +    ++a+ lae Gg++  +e ++ +++lvv
  KIR61767.1  60 GRVVSGDEDGRLWWWAADapAGTPARLLAETGGRPLGIELDPRDGSLVV 108
                 59999999997776665422779******************99988887 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.6
         BAT 103 aeaedgrarlvvevP 117
                 +   +g a++ +++P
  KIR61767.1 220 VDLPGGAATVLADLP 234
                 333344455555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2561.69
//
Query:       KIR61768.1  [L=232]
Description: cbs domain-containing membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-27   94.4   9.2    2.1e-13   50.5   0.1    2.7  3  CBS       CBS domain
    1.2e-09   38.3   6.6    1.2e-09   38.3   6.6    1.9  2  BON       BON domain


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   1.6     9e-17   8.1e-13       1      55 [.       6      60 ..       6      62 .. 0.96
   2 !   50.5   0.1   2.3e-17   2.1e-13       1      54 [.      89     142 ..      88     145 .. 0.93
   3 ?   -2.5   0.1      0.83   7.4e+03      19      26 ..     156     163 ..     152     181 .. 0.53

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 9e-17
                HHHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHHH CS
         CBS  1 VgdimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllral 55
                Vgd+mt+dv tv ++t+ +++++ ++++g+s++PVVd+  +++G+v+++Dll  +
  KIR61768.1  6 VGDVMTKDVATVGEETPYRQIVDVLVRRGISGVPVVDGFRRVLGVVSETDLLHRI 60
                89**********************************9999************987 PP

  == domain 2  score: 50.5 bits;  conditional E-value: 2.3e-17
                 HHHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHH CS
         CBS   1 VgdimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllra 54 
                 +gd+mt + vt +p+++l  a++++ + +v+rlPV+d+ g+lvGivt+ Dllr+
  KIR61768.1  89 AGDLMTAPAVTTYPQASLPAAARQLDRDAVRRLPVLDDLGRLVGIVTRGDLLRV 142
                 58***********************5555***********************96 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.83
                 HHHHHHHH CS
         CBS  19 eealelmr 26 
                 +e+l++  
  KIR61768.1 156 REVLRRVL 163
                 55555532 PP

>> BON  BON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.2         2   1.8e+04      44      53 ..      80      89 ..      77      90 .. 0.66
   2 !   38.3   6.6   1.3e-13   1.2e-09       2      67 ..     147     213 ..     146     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2
                HHHHHHHHHH CS
         BON 44 ekekAveiar 53
                ++ekA+++++
  KIR61768.1 80 AREKAAALVA 89
                6777777765 PP

  == domain 2  score: 38.3 bits;  conditional E-value: 1.3e-13
                 HHCCHHHHHHHHHHH.CHTTGCCCEEEEETTCEEEECEEECHHHHHHHHHHHHCCTTEEEEEEEEEE CS
         BON   2 Daeiaakvkaalakd.ggldaadinVevenGvVtLsGtVdseaekekAveiarnvaGVkkVvnelkv 67 
                 Daei+++v +++++   +++   ++V v +G+VtL G+ d ++e ++A ++a++v GV +Vvn + +
  KIR61768.1 147 DAEIREEVVREVLRRvLAVRDGLVTVRVRDGEVTLDGRLDRRSEVDLAGRLAAQVGGVVRVVNTIAY 213
                 88888888777777768889*******************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1560.08
//
Query:       KIR61769.1  [L=297]
Description: hypothetical protein TK50_30100 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-07   30.2   0.0    5.2e-07   29.6   0.0    1.2  1  DUF2726   Protein of unknown function (DUF2726)


Domain annotation for each model (and alignments):
>> DUF2726  Protein of unknown function (DUF2726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   2.9e-11   5.2e-07      51     113 ..      54     116 ..      37     128 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2.9e-11
     DUF2726  51 lnrisakrvDfllcdkadlkpvavIeldgakhkqgkarkrDalkraalaaAgipllrvkakks 113
                 +n++ +  +D ++c+    +p++v+e+  ++   ++a++ +++k+a++aa+g+p+lr+ + + 
  KIR61769.1  54 WNSAGREGFDHVVCAGDSGRPLFVVEIGPPAPAGSAAQRAERMKNAVCAAVGLPVLRIVSPTL 116
                 67777888*******7777***************************************55544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2280.66
//
Query:       KIR61770.1  [L=428]
Description: hypothetical protein TK50_30105 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3180.52
//
Query:       KIR61771.1  [L=115]
Description: nucleoid-associated protein Lsr2 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-39  132.2   0.1      9e-39  132.0   0.1    1.0  1  Lsr2      Lsr2


Domain annotation for each model (and alignments):
>> Lsr2  Lsr2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   0.1     5e-43     9e-39       1     109 [.       1     114 [.       1     115 [] 0.93

  Alignments for each domain:
  == domain 1  score: 132.0 bits;  conditional E-value: 5e-43
        Lsr2   1 mArkvvvtlvDDldgseadetvefgldgveYeiDLseenaeklrdaLapyieaarrvggrkk.....krrarrkaaaaasreqaaaiReWakengievs 94 
                 mArkv++ l+DDldg++ad+tvef+ldgv+Y+iD+s+ena +lr+aL+pyi+a+rr+g+         rr  r+  +  +req++aiReWa++ng+e+s
  KIR61771.1   1 MARKVITVLTDDLDGGKADRTVEFSLDGVAYTIDVSDENAGTLRKALDPYINAGRRIGRGPVeagrtVRRPGRAPVSGMDREQNRAIREWATKNGYEIS 99 
                 9********************************************************9655467766666667777889******************** PP

        Lsr2  95 erGripaevieaYea 109
                 +rGrip +v+ea+++
  KIR61771.1 100 DRGRIPVSVVEAFKN 114
                 *************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 893.96
//
Query:       KIR61772.1  [L=776]
Description: Lon protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-85  285.7   0.0    2.7e-85  285.1   0.0    1.3  1  Lon_C           Lon protease (S16) C-terminal proteolytic dom
    1.4e-19   70.8   0.0    2.8e-19   69.8   0.0    1.5  1  AAA             ATPase family associated with various cellula
    5.2e-19   69.0   0.0    8.2e-19   68.3   0.0    1.3  1  LON_substr_bdg  ATP-dependent protease La (LON) substrate-bin
    1.2e-07   31.6   0.0    2.8e-07   30.4   0.0    1.7  1  ChlI            Subunit ChlI of Mg-chelatase
    3.8e-07   30.2   0.0    8.8e-07   29.0   0.0    1.7  1  AAA_5           AAA domain (dynein-related subfamily)
    0.00016   21.8   0.0     0.0004   20.5   0.0    1.6  1  AAA_2           AAA domain (Cdc48 subfamily)
     0.0012   19.1   0.8      0.025   14.8   0.0    3.2  3  AAA_22          AAA domain
     0.0013   19.2   0.3     0.0013   19.2   0.3    3.4  3  AAA_16          AAA ATPase domain
     0.0047   17.1   0.4      0.019   15.1   0.0    2.2  2  AAA_33          AAA domain
      0.009   16.6   0.0      0.019   15.5   0.0    1.5  1  AAA_18          AAA domain
  ------ inclusion threshold ------
       0.01   15.6   0.0      0.023   14.4   0.0    1.6  1  IstB_IS21       IstB-like ATP binding protein
      0.019   14.9   0.1       0.15   12.0   0.0    2.4  2  NTPase_1        NTPase
      0.022   14.6   0.0      0.053   13.4   0.0    1.6  1  AAA_3           ATPase family associated with various cellula
      0.023   14.4   0.0      0.071   12.8   0.0    1.8  1  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
      0.032   14.1   4.2        0.5   10.2   0.2    2.6  2  MEDS            MEDS: MEthanogen/methylotroph, DcmR Sensory d
      0.048   13.2   2.8       0.11   12.1   0.0    2.8  3  AAA_25          AAA domain
      0.076   12.3   1.1       0.44    9.8   0.1    2.3  2  Zeta_toxin      Zeta toxin
       0.18   11.9   0.0       0.32   11.0   0.0    1.5  1  AAA_14          AAA domain


Domain annotation for each model (and alignments):
>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.1   0.0   2.7e-88   2.7e-85       2     203 ..     559     760 ..     558     762 .. 0.99

  Alignments for each domain:
  == domain 1  score: 285.1 bits;  conditional E-value: 2.7e-88
                 E-TTTTHHHH-S-SS--SSSSS--BSSEEEEEEEETTEEEEEEEEEEEESS-S-EEEEES--HHHHHHHHHHHHHHTSS-GGGSS-SS-TTT-EEEEEE CS
       Lon_C   2 vtakeleellGkkrfrseeaekedqvGvvtGlawtevGGdlltieavllpgkgklkltGklgdvmkesaqaalsyvrsraeelgidkevfekkdihihv 100
                 v+a++l ++lG++rf++e+ae++   Gv+tGla t +GGd+l+iea++++g+  l+ltG+lgdvmkesaq+alsy+rs+ ++lgid++++  ++ih+hv
  KIR61772.1 559 VDADNLARYLGRPRFTPESAERTAVPGVATGLAVTGAGGDVLFIEATSMEGEPGLTLTGQLGDVMKESAQIALSYLRSNGRRLGIDPNALAGRRIHLHV 657
                 899************************************************************************************************ PP

                 -S-B-GGGGGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHHHHHHHTT-SBEEEEGGGGGGTTTS-HHHHTS-B--EESBHHHHH CS
       Lon_C 101 PeGavPkdGPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekllaakragikkvilPkenekdlediPeevreeleiilveevdevl 199
                 P+GavPkdGPsaG+t++tal sl+tg++vr + +mtGe+tL+GrvlpiGG+k+kllaa+rag+++vi+P +ne dl+d+P evre+l+++++ +v +vl
  KIR61772.1 658 PAGAVPKDGPSAGITMVTALASLVTGRPVRPEFGMTGEVTLSGRVLPIGGVKQKLLAAHRAGLTEVIIPARNEPDLDDLPAEVREALTVHTLADVADVL 756
                 *************************************************************************************************** PP

                 HHHB CS
       Lon_C 200 kaal 203
                 + al
  KIR61772.1 757 ALAL 760
                 *998 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   2.8e-22   2.8e-19       2     126 ..     343     478 ..     342     482 .. 0.96

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 2.8e-22
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.........STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellsk.........yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlt 91 
                  l GppG+GKT+l ++va+ lg++f+++s+  ++++         yvg+ + +i   ++ea +++   ++++DE+d+la          + + +++Ll+
  KIR61772.1 343 ALAGPPGVGKTSLGESVARALGRNFVRVSLGGVRDEaeirghrrtYVGALPGRIVRALREAGSMN--PVVLLDEVDKLAVGY-------SGDPAAALLE 432
                 589*******************************889***************************9..9**********8887.......999******* PP

                 HHHHTTTS............SSTEEEEEEESSGGGSTHHHHSTTSSE CS
         AAA  92 eldgvkkk............eskvivigatnrpdkldpallrgRfdr 126
                 +ld  +++             s+v++++++n +++++ +ll +R++ 
  KIR61772.1 433 VLDPAQNHtfrdhylevdldLSDVLFLATANVVETIPGPLL-DRMEL 478
                 ********************999******************.9*986 PP

>> LON_substr_bdg  ATP-dependent protease La (LON) substrate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   8.2e-22   8.2e-19       1     206 [.       3     183 ..       3     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 8.2e-22
  LON_substr_bdg   1 elpllpldnkvlfPgitlpltvsrpksiaaierlldk.dkpyigvflvkesqkdaideesiselysvGtvarIvqilrlddgrikvvlegleRvk 94 
                     +lp+lpl + vl+Pg+++p+t+  p + aa+++++ + dk+ ++v+++             +e+ svG++a I ++ rl+dg+   v++gl+R++
      KIR61772.1   3 TLPVLPLTDAVLLPGMVVPVTLD-PTTQAAVDAARATgDKKVLAVPRI------------DGEYGSVGVIATIEKVGRLPDGEPAAVVRGLSRAR 84 
                     69*******************66.***********8867775555555............58********************************* PP

  LON_substr_bdg  95 ikklekekeegylvaeveiieddsepedsdslqkelkalvqeiiekikkslarellkllleielllkyedlenpyrLadlvaailpfsneekqel 189
                     i +  ++     l++e ++++    ++  +      ++l +e+   ++     + l++ + ++ ++ +e +++ ++Lad ++    +   +k el
      KIR61772.1  85 IGSG-VPGPGAALWVEATELD----EPAPA---GRARELAREYRALMT-----SVLQQRGAWQVIDAMERMTDLSELADAAGYAPWLTLAQKTEL 166
                     *555.1334444566666662....22222...367888888888888.....7888888899*********************99********* PP

  LON_substr_bdg 190 LeeldvedRlkkvlelL 206
                     L++ dv++Rl++++ ++
      KIR61772.1 167 LAAADVTARLELLVGWV 183
                     ***********998775 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   2.8e-10   2.8e-07       1     121 []     602     729 ..     602     729 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2.8e-10
        ChlI   1 vevdvskglpkftivGlpdtavkeskervrsalkn.......sgfefpakkitvnLaPadlkkeGsafDLpiAigilaaleqieaeeetlflGeLsldG 92 
                 +e++  +g p++t++G +   +kes +   s l++           +  ++i + +    ++k+G++  +++  ++ + +   +++ e+ + Ge+ l+G
  KIR61772.1 602 IEATSMEGEPGLTLTGQLGDVMKESAQIALSYLRSngrrlgiDPNALAGRRIHLHVPAGAVPKDGPSAGITMVTALASLVTGRPVRPEFGMTGEVTLSG 700
                 7889999***************************94444332223456799*****9999************9999999******************** PP

        ChlI  93 slrpvkgvlpialaakkegikkvivpken 121
                 ++ p+ gv + +laa+++g+++vi+p+ n
  KIR61772.1 701 RVLPIGGVKQKLLAAHRAGLTEVIIPARN 729
                 **************************987 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   8.8e-10   8.8e-07       3     124 ..     343     466 ..     341     476 .. 0.74

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 8.8e-10
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG-....-HHHHHHHHHHHHSSE CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEvera....esevlnsLlslleerr 93 
                  L GppG+gK++l e++a+al+r+++ v l     e++++g+r++        ++ +vra r       +++lDEv+++    + + +++Ll +l+  +
  KIR61772.1 343 ALAGPPGVGKTSLGESVARALGRNFVRVSLGGVRDEAEIRGHRRTY---VGALPGRIVRALReagsMNPVVLLDEVDKLavgySGDPAAALLEVLDPAQ 438
                 599*****************************************74...34457777777775555778********9722223577788888888777 PP

                 EE..-SSSEEE---......-EEEEEESS-- CS
       AAA_5  94 llleeggelvkaknddllerfrviatanpld 124
                  ++   + l+ ++ d  l+++ ++atan ++
  KIR61772.1 439 NHTFRDHYLE-VDLD--LSDVLFLATANVVE 466
                 7744433333.3332..34477777777665 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     4e-07    0.0004       6     131 ..     342     466 ..     339     499 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4e-07
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHH..HTTS....EEEEETGGG-------------HHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvga..eegG....ivllDEidKihpkessgadvSregVqrd 98 
                 + l+gp gvGkt l +++a+ l     ++++r+    +  e e++      +ga pg + +   e G    +vllDE+dK +         S+ +   +
  KIR61772.1 342 LALAGPPGVGKTSLGESVARALG----RNFVRVSLGGVRDEAEIRGHRRTYVGALPGRIVRalREAGsmnpVVLLDEVDKLAV------GYSG-DPAAA 429
                 5689******************9....79999999999999999999999999999976541157779***************......4554.66889 PP

                 HHHHHH--EE-...----.--EE-TT-EEEEEE--TT CS
       AAA_2  99 LLqileggtlt...dkqg.rkvdtknilfImtgafgs 131
                 LL +l+ ++     d++     d +++lf++t ++  
  KIR61772.1 430 LLEVLDPAQNHtfrDHYLeVDLDLSDVLFLATANVVE 466
                 *****98876645466654788899999999999876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.9   4.9e+03      69     104 ..     108     143 ..      99     155 .. 0.68
   2 !   14.8   0.0   2.5e-05     0.025       5     105 ..     339     423 ..     336     444 .. 0.78
   3 ?   -2.9   0.1       7.8   7.8e+03      72      86 ..     525     539 ..     493     553 .. 0.44

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.9
      AAA_22  69 ka..erlsseellealeqalraravielliiDEaqhlr 104
                  a  +r   +e++++++  l++r++    +iD +++++
  KIR61772.1 108 PAgrARELAREYRALMTSVLQQRGA--WQVIDAMERMT 143
                 4454556667777888888888888..89999999983 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2.5e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav.ielliiDEaqh 102
                   +l++ G++G+GKT l + +++ l         ++ +v+v l +  + ++++ +    +g           +l  ++ +alr+++   +++++DE+++
  KIR61772.1 339 GAVLALAGPPGVGKTSLGESVARAL---------GRNFVRVSLGGVRDEAEIRGHRRTYVG-----------ALPGRIVRALREAGSmNPVVLLDEVDK 417
                 56899********************.........999999999999999999888777777...........466677777777777788899999999 PP

      AAA_22 103 lr...s 105
                 l    s
  KIR61772.1 418 LAvgyS 423
                 966553 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 7.8
      AAA_22  72 rlsseellealeqal 86 
                 ++++e+ +++le+al
  KIR61772.1 525 EHTREAGVRQLERAL 539
                 233333334444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   2.3       1.7   1.7e+03      53     116 ..     157     232 ..     120     333 .. 0.65
   2 !   19.2   0.3   1.3e-06    0.0013      21      76 ..     336     392 ..     322     447 .. 0.68
   3 ?   -0.9   0.1       1.9   1.9e+03      78     126 ..     494     546 ..     463     566 .. 0.42

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.7
      AAA_16  53 giflrgkcdqlesa..ipysa.laqalareellrqlldeaesaeleawrekleeala..........avpelagaea 116
                 +++l++k++ l +a  ++++  l+    re+l +q+ +e+ ++++++  ek ++++           + +e++++++
  KIR61772.1 157 WLTLAQKTELLAAAdvTARLElLVGWV-REHLAEQEVTEQINSDVREGLEKTQREFLlrqqlaairkELGEDSPDGS 232
                 455555555552222334444244444.6666666666655555555555555554455555554453333333333 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.3e-06
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqal 76 
                 +g++ ++ l G++GvGK+sl ++++ral ++ + + l g  d+ e   ++ +++ al
  KIR61772.1 336 RGSGAVLALAGPPGVGKTSLGESVARALGRNFVRVsLGGVRDEAEIRGHRRTYVGAL 392
                 45668999******************9999944442222222221111222344444 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.9
      AAA_16  78 reellrqllde.....aesaeleawrekleealaavpelagaea......srllellkrl 126
                 r++ll   l++     +e + ++++ + + ++ +  +e     a      ++l+  l++ 
  KIR61772.1 494 RDHLLPRQLQRagltaEEVTVADDALTLIAGEHT--RE-----AgvrqleRALAKILRKV 546
                 3333333333311110111111222222222111..11.....11222212233333333 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       2.7   2.7e+03      15      31 ..     182     199 ..     104     245 .. 0.61
   2 !   15.1   0.0   1.9e-05     0.019       1      30 [.     341     372 ..     341     406 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.7
      AAA_33  15 laerllkklg.avllssd 31 
                 +++++l+++  ++ ++sd
  KIR61772.1 182 WVREHLAEQEvTEQINSD 199
                 333333333334444444 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.9e-05
      AAA_33   1 lvllvGlpGsGKstlaerllkklg..avllss 30 
                 ++ l G+pG+GK+ l e+++++lg  +v++s 
  KIR61772.1 341 VLALAGPPGVGKTSLGESVARALGrnFVRVSL 372
                 56789*******************99999986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.9e-05     0.019       2      29 ..     343     368 ..     342     389 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.9e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgfgvnlr 29 
                 +l+G+pGvGKt+l++ +++ l  g+n  
  KIR61772.1 343 ALAGPPGVGKTSLGESVARAL--GRNFV 368
                 589****************99..55543 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.3e-05     0.023      49     137 ..     341     437 ..     313     442 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.3e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrd......gklaralkrllkv.dllilDdlgllpl..dqaeaellfeviekr 137
                  ++l Gp+GvGK+ l  +++++  r+ ++v+   v+d  +e++ +rr       g++ ral++   +  +++lD++  l +  + + a+ l+ev++ +
  KIR61772.1 341 VLALAGPPGVGKTSLGESVARALGRNFVRVSLGGVRDE-AEIRGHRRTyvgalpGRIVRALREAGSMnPVVLLDEVDKLAVgySGDPAAALLEVLDPA 437
                 6899**************************99999885.44555554333333389999999988885799999998776533778888999998865 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00015      0.15       2      37 ..     342     379 ..     341     390 .. 0.72
   2 ?   -0.8   0.0       1.3   1.3e+03      84     107 ..     395     418 ..     387     438 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
                 EEEE--TTSSHHHHHHHHHHHH...GGGE..EEEEEEE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkv..gGfytee 37 
                 +++ GppGvGKt l + v+++l ++ v+v  gG+  e 
  KIR61772.1 342 LALAGPPGVGKTSLGESVARALGRNFVRVslGGVRDEA 379
                 5799******************8885554115665544 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHH-EEEE---STT CS
    NTPase_1  84 lalealrkalseadviviDEiGkm 107
                  +++alr+a s + v+++DE+ k+
  KIR61772.1 395 RIVRALREAGSMNPVVLLDEVDKL 418
                 57899***999999******9776 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.3e-05     0.053       4     114 ..     344     466 ..     341     475 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.3e-05
       AAA_3   4 legvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeeke....kefefkkGpvfanllladeinrap....pktqsalleameerq.vtv 93 
                 l g PG++kt l +++a+al+ +f r+ +      ++i G++     +        +++   ++ ++l de+++ +        +alle+++  q  t+
  KIR61772.1 344 LAGPPGVGKTSLGESVARALGRNFVRVSLGGVRDEAEIRGHRRTYVGAlpgrIVRALREAGSMNPVVLLDEVDKLAvgysGDPAAALLEVLDPAQnHTF 442
                 7899************************99988899999986544433344223346677778889999999885411114557888888876541455 PP

       AAA_3  94 egethklp...epflvlatqnPie 114
                 +++  +++   +  l lat n +e
  KIR61772.1 443 RDHYLEVDldlSDVLFLATANVVE 466
                 555555442223456677777776 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.2e-05     0.071      37      65 ..     343     371 ..     326     383 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.2e-05
      RuvB_N  37 llyGpPGlGkttlakiiakelgvklkits 65 
                  l+GpPG+Gkt+l + +a+ lg ++   s
  KIR61772.1 343 ALAGPPGVGKTSLGESVARALGRNFVRVS 371
                 489******************99976554 PP

>> MEDS  MEDS: MEthanogen/methylotroph, DcmR Sensory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.6     0.032        32      10     119 ..     189     292 ..     187     307 .. 0.69
   2 ?   10.2   0.2    0.0005       0.5      22     104 ..     481     559 ..     471     570 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.032
        MEDS  10 eeellealvpfikaglargekvlyvasastldelrealrkagldvda.alesgqleildaeetylrgggfdpermlealrralakaladgy..aglrvi 105
                 e+e++e + + +++gl++ ++ +++ +  +l+++r++l ++ +d +a ++++ +   l++    +r+++ +    + +l+ra +++ ++g+  + l ++
  KIR61772.1 189 EQEVTEQINSDVREGLEKTQREFLLRQ--QLAAIRKELGEDSPDGSAdYRARVEAATLPEK---VREAALRE---VGKLERASDASPEAGWirTWLDTV 279
                 68899999999*********9998655..9********99888887767777744333333...44444444...666666666655554411556678 PP

        MEDS 106 gemtwalrspaere 119
                  em w  r++ +  
  KIR61772.1 280 LEMPWTTRTE-DNT 292
                 8888888877.444 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0005
        MEDS  22 kaglargekvlyvasastldelrealrkagldvda.alesgqleildaeetylrgggfdpermlealrralakaladgyaglrv 104
                  +g  ++ekv+++ +     +l ++l++agl +++  ++ ++l+++  e+t  + g++  er+l+++ r++a alad  + +rv
  KIR61772.1 481 LDGYTEDEKVAIARD----HLLPRQLQRAGLTAEEvTVADDALTLIAGEHTR-EAGVRQLERALAKILRKVAVALADDPTPVRV 559
                 578899999999888....789999999999999977888899****99975.8888888***************998888887 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.91   9.1e+02     126     169 ..     115     158 ..      93     174 .. 0.74
   2 ?   12.1   0.0   0.00011      0.11      26      60 ..     332     364 ..     314     378 .. 0.73
   3 ?   -2.6   0.2       3.5   3.5e+03      94     140 ..     506     542 ..     494     550 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.91
      AAA_25 126 ltadvdaleaaieevegvrlvviDplsralggdensnsdv.galv 169
                 l+++++al+  + +  + +  viD + r+++ +e ++++  ++++
  KIR61772.1 115 LAREYRALMTSVLQ-QRGAWQVIDAMERMTDLSELADAAGyAPWL 158
                 56677777777777.667777999999999999888887645554 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00011
      AAA_25  26 vkgllpagelallaGapgtGKttlaldlalavatG 60 
                 v g +  g++ +laG+pg+GKt l  ++a   a+G
  KIR61772.1 332 VVGGRGSGAVLALAGPPGVGKTSLGESVA--RALG 364
                 44455789**************9865544..4445 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3.5
      AAA_25  94 gealrddarllvldlagveslpLfakdrggtlltadvdaleaaieev 140
                 g ++   ++++v d    + l+L   ++g+++++a v++le+a+ ++
  KIR61772.1 506 GLTA---EEVTVAD----DALTL---IAGEHTREAGVRQLERALAKI 542
                 4444...4444443....23444...567888888888888888765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.45   4.5e+02     109     179 ..     141     213 ..     134     226 .. 0.76
   2 ?    9.8   0.1   0.00044      0.44      18      52 ..     341     373 ..     335     385 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.45
  Zeta_toxin 109 vvkklaealkkaGYevevvvvavkkelSrlgvldRyeeevae..gRlvpkeehdeafeglresvealeeekql 179
                  + +l e + +aGY   + +    + l++ +v +R e  v      l++ e+ +++ + +re +e+ ++e++l
  KIR61772.1 141 RMTDLSELADAAGYAPWLTLAQKTELLAAADVTARLELLVGWvrEHLAEQEVTEQINSDVREGLEKTQREFLL 213
                 555677888899******99999999*********99994433236777777777777778877777777654 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00044
  Zeta_toxin  18 lillgGqpGAGKselaellkdelerqgnvvrldpD 52 
                 ++ l+G pG GK++l e ++++l  ++n+vr++  
  KIR61772.1 341 VLALAGPPGVGKTSLGESVARAL--GRNFVRVSLG 373
                 5679*******************..9*****9865 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00032      0.32       3      76 ..     340     418 ..     338     452 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00032
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla.dpe.........kllelileklkeekktylflDEiqev 76 
                  +l++ G+  vGKT l + +++ l    ++++ ++l   rd+++    +         ++ ++++e   ++ + +++lDE+ ++
  KIR61772.1 340 AVLALAGPPGVGKTSLGESVARALG---RNFVRVSLGGVRDEAEIrGHRrtyvgalpgRIVRALREA--GSMNPVVLLDEVDKL 418
                 58999****************9999...********9988844321121334563333444444443..257799*****9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 5344.22
//
Query:       KIR61773.1  [L=123]
Description: hypothetical protein TK50_30125 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-25   86.9  16.1      1e-24   86.6  16.1    1.0  1  DoxX_2    DoxX-like family
    0.00067   20.2  11.7    0.00067   20.2  11.7    2.6  2  DoxX      DoxX
  ------ inclusion threshold ------
      0.028   14.5   2.0      0.065   13.3   0.4    2.1  2  YrhC      YrhC-like protein
       0.34   10.7  13.8      0.042   13.6   9.0    1.9  1  MauE      Methylamine utilisation protein MauE
        3.8    7.1   6.5         47    3.6   6.5    2.2  1  DUF4131   Domain of unknown function (DUF4131)
        8.5    6.3   7.3        2.9    7.8   4.2    1.8  2  SLATT_1   SMODS and SLOG-associating 2TM effector domain 1


Domain annotation for each model (and alignments):
>> DoxX_2  DoxX-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6  16.1   3.4e-28     1e-24       2     103 .]       8     113 ..       7     113 .. 0.92

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 3.4e-28
      DoxX_2   2 ltvllalffllsGvakllraeevv.akfaql.gfpssfvrllGvvellgalgLllplvt..aprltplAavglallmvgAiathlrrgdpkavalpavl 96 
                 l++llal+f+++G++k+++++e++ +k+  + g+p+++v++lG++e+l+a+gL+lp++t  a++ltplAavg a++m+gA+++h+r+++++ +a+ a+l
  KIR61773.1   8 LQILLALVFAGAGLTKVTQPKEKLrEKMSFVeGVPEGAVKALGALEVLAAIGLVLPALTgiATVLTPLAAVGAAIVMAGAVVVHVRAKEYPPAAFTALL 106
                 89******************8665279**9989***********************656668************************************* PP

      DoxX_2  97 lalalav 103
                 l+ al+v
  KIR61773.1 107 LVAALVV 113
                 *998875 PP

>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2  11.7   2.3e-07   0.00067       2      82 ..       5      90 ..       4      93 .. 0.77
   2 ?    1.9   0.5      0.11   3.3e+02      67      80 ..     102     115 ..      98     120 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.3e-07
        DoxX  2 llllRlllgvlfiahGlqkltgfglegtaaslaalglpppellaylaalvElvgglllllGlltR.......laAlalavtllvatlt 82
                l +l +ll+++f  +Gl+k+t  ++++   +  ++   +pe ++ + +++E++++++l+l  lt        laA++ a+++++a+++
  KIR61773.1  5 LWALQILLALVFAGAGLTKVT--QPKEKLREKMSFVEGVPEGAVKALGALEVLAAIGLVLPALTGiatvltpLAAVGAAIVMAGAVVV 90
                667899***************..5555444444555567*******************88544333333444************9976 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.11
        DoxX  67 laAlalavtllvat 80 
                 + Al+l++ l+va+
  KIR61773.1 102 FTALLLVAALVVAW 115
                 67888888888887 PP

>> YrhC  YrhC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.37   1.1e+03      46      70 ..       9      33 ..       2      34 .. 0.67
   2 ?   13.3   0.4   2.2e-05     0.065      19      64 ..      51      97 ..      48     101 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.37
        YrhC 46 aivvfLllaflflrrskkyqkkLee 70
                 i+++L++a   l ++ + ++kL+e
  KIR61773.1  9 QILLALVFAGAGLTKVTQPKEKLRE 33
                4556666777777777777777777 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.2e-05
        YrhC 19 alsaFLyiGlviPs.eaketlkksillgaivvfLllaflflrrskky 64
                al +   iGlv+P+  +++t+ ++++ ++ ++++++a++++ r+k+y
  KIR61773.1 51 ALEVLAAIGLVLPAlTGIATVLTPLAAVGAAIVMAGAVVVHVRAKEY 97
                5666667******8569**************************9987 PP

>> MauE  Methylamine utilisation protein MauE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   9.0   1.4e-05     0.042       8      96 ..       3      92 ..       1      97 [. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
        MauE  8 vvavlvrlflalllaaaaipklrhveefyGvvrnf.rllPellarpvalvlPlvelavavglvvppaaelaavv....aagllvvfalalainv 96
                +++++++++lal++a a ++k+  ++e       f   +Pe ++    + l  +e++ a+glv+p+++ +a+v+    a g  +v+a a+ + v
  KIR61773.1  3 IALWALQILLALVFAGAGLTKVTQPKEKLREKMSFvEGVPEGAV----KALGALEVLAAIGLVLPALTGIATVLtplaAVGAAIVMAGAVVVHV 92
                689*********************99865444444155666555....668899************9999987533225677788887777766 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   6.5     0.016        47       8      47 ..      76     116 ..       2     121 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.016
     DUF4131   8 vllalllllllllllllrr..rprrrvllllllllllallgf 47 
                  +++++ ++++ +++++ r   + +  +++lll+++l++++ 
  KIR61773.1  76 AAVGAA-IVMAGAVVVHVRakEYPPAAFTALLLVAALVVAWG 116
                 222222.23333333333356888888999999999998886 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.3   3.8e+03      56      68 ..       9      21 ..       2      33 .. 0.49
   2 ?    7.8   4.2   0.00097       2.9      32      77 ..      53     100 ..      43     114 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.3
     SLATT_1 56 gvlaavaaallaW 68
                ++l a++ a++  
  KIR61773.1  9 QILLALVFAGAGL 21
                3333333333333 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00097
     SLATT_1  32 illellalllaalr.afgelsv.dlvgvlaavaaallaWlelkqyeel 77 
                  +l +++l+l al  ++++l+  ++vg+++++a+a++ ++ +k+y + 
  KIR61773.1  53 EVLAAIGLVLPALTgIATVLTPlAAVGAAIVMAGAVVVHVRAKEYPPA 100
                 46788999999988744444445*******************999775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       892  (0.0497518); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 857.48
//
Query:       KIR61774.1  [L=574]
Description: heavy metal transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-50  170.0   0.0    1.5e-49  168.1   0.0    1.8  2  DEAD        DEAD/DEAH box helicase
    2.4e-29  101.9   0.0    8.3e-29  100.2   0.0    1.9  3  Helicase_C  Helicase conserved C-terminal domain
    1.7e-24   85.6   0.2    3.6e-24   84.5   0.2    1.6  1  DbpA        DbpA RNA binding domain
     0.0008   19.5   0.0     0.0018   18.3   0.0    1.6  1  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.13   12.8   0.0       0.29   11.6   0.0    1.6  1  WSD         Williams-Beuren syndrome DDT (WSD), D-TOX E motif


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.1   0.0   4.3e-53   1.5e-49       1     172 [.      48     212 ..      48     215 .. 0.98
   2 ?   -1.4   0.0      0.47   1.7e+03      65     105 ..     281     325 ..     270     340 .. 0.70

  Alignments for each domain:
  == domain 1  score: 168.1 bits;  conditional E-value: 4.3e-53
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvd 99 
                 t+iQ+eaip +l g+d+l++a+TG+GKT+af++p+lq++ + ++  +p al+++PtreLa q+ + + +++k ++ rvl i+gg++  +ql++ld gvd
  KIR61774.1  48 TPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPLLQRMPDGRTGGEPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDLGVD 146
                 89*************************************998999****************************************************** PP

                 EEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkd 172
                 +vv+tpgr +d++ +g+l+l  + ++VlDEad++ld+gf ++i++il++        ++qrq++++SAT+p+ 
  KIR61774.1 147 VVVATPGRALDHIARGTLRLGGLATVVLDEADEMLDMGFAEDIEAILEHA-------PQQRQTVLFSATMPSR 212
                 **************************************************.......68899********965 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.47
                 HHHHHHTTTSTSEEEEEETTSSHHHHHHHH...HTT.CSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxxx RF
        DEAD  65 nnlkkfkkyidlrvlliiggvaardqlskl...dng.vdivvgtp 105
                 ++l++ ++  ++r++++ gg ++++  +++   ++g +d++v+t 
  KIR61774.1 281 DRLTETMNGRGYRAEALHGGMSQEQRDRVMgrlRAGtADLLVATD 325
                 556666666668888888887776666655433555688888885 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.9     1e+04      20      57 ..      98     139 ..      94     150 .. 0.60
   2 ?   -3.3   0.0       3.2   1.1e+04       6      25 ..     189     208 ..     186     219 .. 0.68
   3 !  100.2   0.0   2.3e-32   8.3e-29       2     111 .]     254     362 ..     253     362 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.9
                 EEEESSHH.HHHHHHHHHHHT...TSTEEEESTTSTHHHHHH CS
  Helicase_C  20 lifvntid.rlekvklllekk...gikvavlhgelpqneree 57 
                 l+ v+t++  ++  + +++     g +v++++g  p   +++
  KIR61774.1  98 LVLVPTRElAVQVSEAFHRYGkdlGARVLPIYGGQPIGRQLR 139
                 677777774222234442222445788888888766655555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.2
                 HHHHHHHTTTTSEEEEEESS CS
  Helicase_C   6 llellkleeeggkilifvnt 25 
                 + ++l++  +++++++f+ t
  KIR61774.1 189 IEAILEHAPQQRQTVLFSAT 208
                 45556666777777777766 PP

  == domain 3  score: 100.2 bits;  conditional E-value: 2.3e-32
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekk..gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv 97 
                 k++al + l   e+   +++f+++++++++ ++ +   +  g+++ +lhg ++q++r++++ + ++g+ d+L+atdva+rG+d++++++V+n+d+p  +
  KIR61774.1 254 KPAALGRVL-DVESPTAAIVFCRSREEVDRlTETM---NgrGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVATDVAARGLDVEQLTHVVNYDVPSAP 348
                 667777777.7899999***********8533333...3569********************************************************* PP

                 HHHHHHHTTSSSTT CS
  Helicase_C  98 tsyiqriGRtgRag 111
                 +sy++riGR+gRag
  KIR61774.1 349 ESYVHRIGRVGRAG 362
                 ************97 PP

>> DbpA  DbpA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.2     1e-27   3.6e-24       2      71 ..     499     568 ..     498     569 .. 0.98

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 1e-27
                 EEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT-HHHHHHHHTT--SSS----EE CS
        DbpA   2 lfinvGkkdklrpgdivgaiakeaglsgkdIGkIdildkfSfvevpkekaeevlkalkkkkikGrkvrve 71 
                  fi++G++ ++rp+d+vgai++e+ +sg+dIG+I+i d+fS+vevp+++++ev++ l++ +ikGrk +v+
  KIR61774.1 499 VFIGLGRRAGVRPQDLVGAITGETRVSGRDIGSIEIADRFSLVEVPAAVVDEVIAGLRNSTIKGRKTTVR 568
                 59*****************************************************************998 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   5.1e-07    0.0018      27     168 ..      64     208 ..      46     211 .. 0.60

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.1e-07
                 EEEEESTTSTHHHHHHHHHHHH-S........-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--........-SEEEEEHHHHHHT CS
      ResIII  27 glikmaTGtGKTlvaaklierllkkgkee...kflflvprkslleqtleefkkflseayke....igkkvsgdkkka.kekdstnkkilvttiqsldad 117
                 +l ++aTGtGKT   a    + +  g+      +l+lvp+++l  q  e+f ++ ++  ++          g+   +  +  +   +++v+t  ++  +
  KIR61774.1  64 LLGQAATGTGKTAAFALPLLQRMPDGRTGgepVALVLVPTRELAVQVSEAFHRYGKDLGARvlpiY----GGQPIGRqLRALDLGVDVVVATPGRALDH 158
                 56689*******999666665555444335669******************999987665533332....22222221222445556666666665555 PP

                 H........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT-.--SEEEEEESS CS
      ResIII 118 seeeeeeseellrdrfdviiiDEaHrlgak...kswreilekf.keavllglTAT 168
                 +     ++ +l+ +    ++ DEa  + ++   + +++ile+  ++   + ++AT
  KIR61774.1 159 I-----ARGTLRLGGLATVVLDEADEMLDMgfaEDIEAILEHApQQRQTVLFSAT 208
                 5.....4555555555566666666666654444555555555223444555666 PP

>> WSD  Williams-Beuren syndrome DDT (WSD), D-TOX E motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     8e-05      0.29      64      98 ..     270     304 ..     231     305 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8e-05
         WSD  64 ewavysskeqleeLiesLnprgvREsaLkealeke 98 
                  + +++s+e++++L e +n rg R +aL+  + +e
  KIR61774.1 270 AIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQE 304
                 57899***********************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4438.87
//
Query:       KIR61775.1  [L=173]
Description: hypothetical protein TK50_30135 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-12   46.4   0.1    4.2e-12   46.2   0.1    1.1  1  2_5_RNA_ligase2  2'-5' RNA ligase superfamily
  ------ inclusion threshold ------
      0.013   15.7   0.1      0.044   14.0   0.0    1.8  2  LigT_PEase       LigT like Phosphoesterase


Domain annotation for each model (and alignments):
>> 2_5_RNA_ligase2  2'-5' RNA ligase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.1   4.7e-16   4.2e-12      13     129 ..      24     143 ..      10     158 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 4.7e-16
  2_5_RNA_ligase2  13 r....rslydkayprwppHitLlypfvededladlaellsrlaketepfevrldgfgvFehkksvvylsvsdsealqalraallealpeagdke 102
                            sl    +p  +pH+tL+   + ++    ++++l++l+ ++ p++vrld+++v  +    v+l   +++al al+aa+ + l+ a+ ++
       KIR61775.1  24 AaaglPSLARNTHPTNRPHLTLAAVDEFPP---GARRRLAALVGRALPLPVRLDRIAVLDGSAPLVWLLR-PEPALTALHAAVWDVLAGADGQR 113
                      43335566666778888******9988886...59************************87555999988.9********************** PP

  2_5_RNA_ligase2 103 ds...geftPHlTiaqsadstsaaellekl 129
                       +   g+++PHl++a + ++++ + +++ +
       KIR61775.1 114 PWhapGRWVPHLSLALRFRAADRRLARAVV 143
                      99*************998888765555554 PP

>> LigT_PEase  LigT like Phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.9e-06     0.044      31      76 ..      37      78 ..      16      85 .. 0.76
   2 ?   -1.0   0.0      0.24   2.1e+03      30      54 ..     122     142 ..      92     153 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.9e-06
                SGGGSEEEEEEEEEESHHHHHHHHHHHHHHHHTSBEEEEEEEEEEE CS
  LigT_PEase 31 rpfnpHiTLaflgevdeekvpellealaeiasgaepfelkvdgvgl 76
                +  +pH+TLa + e ++ +  +l + ++++     p ++++d++++
  KIR61775.1 37 PTNRPHLTLAAVDEFPPGARRRLAALVGRA----LPLPVRLDRIAV 78
                7789********999877766666666644....578899999987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.24
                 TSGGGSEEEEEEEEEESHHHHHHHH CS
  LigT_PEase  30 vrpfnpHiTLaflgevdeekvpell 54 
                 v    pH+ La  +   ++++++++
  KIR61775.1 122 V----PHLSLALRFRAADRRLARAV 142
                 3....77777777777766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      142  (0.00792013); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1258.52
//
Query:       KIR61776.1  [L=742]
Description: endoglucanase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-99  332.6  14.4    6.2e-99  332.2  14.4    1.1  1  Glyco_hydro_9  Glycosyl hydrolase family 9
    3.2e-27   94.8  14.5    3.2e-27   94.8  14.5    2.8  3  CBM_2          Cellulose binding domain
    7.6e-23   81.2   0.2    1.9e-22   79.9   0.2    1.7  1  CelD_N         Cellulase N-terminal ig-like domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_9  Glycosyl hydrolase family 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.2  14.4    1e-102   6.2e-99       4     410 ..     130     592 ..     128     593 .. 0.82

  Alignments for each domain:
  == domain 1  score: 332.2 bits;  conditional E-value: 1e-102
                    HHHHHHHHHHHHB-BTTT.TT....-SBSS---BSTTT.............TCCCTS----SB--SSS--EEHHHHHHHHHHHHHHHHHCHHHHHH CS
  Glyco_hydro_9   4 alkksllffeaqRsGklp.en....nrvaWrgdshlkd.............gkdagvdlsGGwyDAGDhvKyvvpmafsvttLlwayeefpeayea 81 
                    + +++l ff++qRsG +p e+    +r++ r+++h++              ++  ++d+ GGwyDAGDh+Kyvv+++ ++++L +  e+  +   a
     KIR61776.1 130 LRTDALAFFYHQRSG-TPiESryvgSRYS-RPAGHVNVapnqgdnavpcrtSCGYTLDVRGGWYDAGDHGKYVVNGGLATWQLQNIHERALHVTGA 223
                    6789***********.7763345888***.********888765555544422248*********************************9999844 PP

                    T...............T-HHHHHHHHHHHHHHHHHTE.....TCTTEEEEEES-HHHHHT--....S-GGG--.---EEEEETTC-.-HHHHHHHH CS
  Glyco_hydro_9  82 a...............gdleeildeikwgldyllkmh.....tkdgvlyvqvGdgdaDhklW....gppedmdtprpvykvdesnp.gtdaaaetA 152
                                    +   ++lde++w+l+++lkm+     t++g+++     +    ++W     +pe +++pr +       p +t+a++++A
     KIR61776.1 224 DragladgtlaipeqaNGVPDVLDEARWELEFMLKMQvpdgrTNAGMVH----HKIH-DQNWtalpTRPELDSQPRLLA------PvSTAATLNLA 308
                    355555555555544467788***************6333335577777....3333.348889998888866889988......88********* PP

                    HHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHH-.-.TT--TGTTTTTTS--SS.HHHHHHHHHHHHHHH--HHHHHHHHHCC.TTSST..... CS
  Glyco_hydro_9 153 AalAaasrvfkksdpayAaklleaAkklyafadkyr.kyadsiaeaagggfYnssd.kDellwAaawlykatkeasylddaksyyskeaas....s 242
                    A++A+asr++k++d+++Aa+ l+aA+k+ya+a++++ ++a++ +++ ggg+Y+++   De++wAaa+ly++t++a y++d++ ++  ++++    +
     KIR61776.1 309 ATAAQASRLWKSYDATFAARALAAAEKAYAAAKANPnRLAPA-TDNTGGGAYEDNSvGDEFYWAAAELYATTGAAGYRADVTGSSY-YKGTsftnR 402
                    **********779*******************9888665664.4567889***8446***************9999*****86443.333357773 PP

                    ..BTTB-HHHHHHHHHHHHHHSHHCC............H.....HHH..HHHHHHHB-TTS-BES-SSSHHHHHHHHHHHHHHHHHTS.S..HHHH CS
  Glyco_hydro_9 243 sfsWdnkvagaqlllagllslalkee........kakasieaaadky..kseaegyytpgglaylyewgslryvanaafllllaadltgdakeyrd 328
                     ++W+  +ag     +g ++lal+++        +++a+i+a+ad++  +++++gy  pg     y wgs+  van+  +l+la d+tg++k yr+
     KIR61776.1 403 GYDWSW-TAG-----LGDTTLALVPNglpaadlaATRAAIVAFADRLltQTATQGYPAPGSGDGTYYWGSNGAVANNGNVLALAFDFTGQQK-YRA 491
                    346666.666.....55555555555666667778899*********988899999666666669**********************99999.*** PP

                    HHHHHHHHHHTTTTTSSBSBTTSSSSB-S--B-HHHHT-...S-SS--TT-B-S---.................TTS-----TT-CCCHB--HHHH CS
  Glyco_hydro_9 329 faksqldyllGrNplgqsYvvGygekspknphhraasgs...pnpnvlpGalvgGPn.................andsyvDdresystnEvaidyn 404
                    +a  + dyllGrNpl+qsYv Gygek+++n+hhr+++++   + p ++pG l+gGPn                 + +++vDd+e+ys+nEvai++n
     KIR61776.1 492 GAYAAYDYLLGRNPLNQSYVAGYGEKPVRNVHHRFWANQndsSLPTAPPGSLSGGPNsqlqdpvavaqlsgckpQ-KCFVDDIEAYSVNEVAINWN 586
                    *************************************9977779************9999999999999999755.******************** PP

                    HHHHHH CS
  Glyco_hydro_9 405 Aplvga 410
                    ++l+++
     KIR61776.1 587 SALAWL 592
                    ****98 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.21   1.3e+03      20      82 ..      54     116 ..      44     128 .. 0.54
   2 ?   -4.0   0.3         3   1.8e+04      64      70 ..     583     589 ..     576     605 .. 0.55
   3 !   94.8  14.5   5.4e-31   3.2e-27       1     101 []     640     739 ..     640     739 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.21
                 EEEE-SSS-EES-EEEEE--TTEEEEE...EESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEE CS
       CBM_2  20 tvkNsgssaingWtvewtlpagqrvtq...lWnatvsqsGnsvtatnvswNgtiapGgsasfGfqg 82 
                 tv  +++s++  Wt++ +   g +v++   +  ++ + sG+sv + + s   t+ +G   ++G ++
  KIR61776.1  54 TVVSTSTSPL-AWTLRNAA--GATVASgqtTVRGADALSGDSVHVADFSAYDTVGSGYVLTVGGNS 116
                 5555566665.46665433..222222000223333456666666666666666666666666555 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 3
                 -STT-EE CS
       CBM_2  64 vswNgti 70 
                 ++wN+ +
  KIR61776.1 583 INWNSAL 589
                 3343333 PP

  == domain 3  score: 94.8 bits;  conditional E-value: 5.4e-31
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTE CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGa 99 
                 +++ty+ + +W++Gf++++tv+Ns+ ++  +W++++ ++agq++ q W++++sqsG +vt+tn swN+++apGgs+s+Gf++s+tg n++p  f+vnG+
  KIR61776.1 640 CAVTYTSN-NWSNGFSGNLTVTNSSAATWPSWSLTFRFTAGQQISQGWSGKFSQSGAEVTVTNESWNAVVAPGGSVSLGFNASHTGANPTPVGFAVNGT 737
                 67888866.9***************************************************************************************** PP

                 E- CS
       CBM_2 100 aC 101
                 +C
  KIR61776.1 738 TC 739
                 *9 PP

>> CelD_N  Cellulase N-terminal ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.2   3.2e-26   1.9e-22       3      84 ..      35     115 ..      33     117 .. 0.95

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 3.2e-26
                 --S--TTTTSS--XXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX CS
      CelD_N   3 esnirvNQvGYlpqseKvAvlvsteassplqfelvdaktgkvvytgtlkkagsdessgenvhiiDFSdfttpGt.Ytikvdgl 84 
                 +  ++vNQv+Y p  +K+A++v ++++spl+++l+ +++g++v++g+++++g+d+ sg++vh++DFS++ t G+ Y+++v+g 
  KIR61776.1  35 GGPVKVNQVAYVPGTPKQATVV-STSTSPLAWTLR-NAAGATVASGQTTVRGADALSGDSVHVADFSAYDTVGSgYVLTVGGN 115
                 678*******************.************.66******************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 5391.96
//
Query:       KIR61777.1  [L=321]
Description: hypothetical protein TK50_30145 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2260.91
//
Query:       KIR61778.1  [L=533]
Description: asparagine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      9e-61  206.5   4.1    8.5e-31  107.9   0.1    2.2  2  Asn_synthase   Asparagine synthase
    2.5e-39  134.0   0.0    3.9e-39  133.4   0.0    1.3  1  GATase_7       Glutamine amidotransferase domain
    9.6e-32  110.0   0.0    2.1e-31  108.9   0.0    1.5  1  GATase_6       Glutamine amidotransferase domain
     0.0019   17.7   0.0     0.0032   16.9   0.0    1.3  1  DUF3700        Aluminium induced protein
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.021   14.3   0.0    1.3  1  QueC           Queuosine biosynthesis protein QueC
      0.039   12.7   0.0      0.076   11.8   0.0    1.4  1  tRNA_Me_trans  tRNA methyl transferase
       0.15   12.3   0.2       0.62   10.3   0.0    2.0  2  LPD22          Large polyvalent protein associated domain 22
       0.25   10.4   0.0       0.42    9.7   0.0    1.3  1  NAD_synthase   NAD synthase


Domain annotation for each model (and alignments):
>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   0.1   3.8e-34   8.5e-31       2     140 ..     212     350 ..     211     354 .. 0.88
   2 !   99.3   1.3   1.6e-31   3.6e-28     204     300 ..     353     449 ..     350     461 .. 0.90

  Alignments for each domain:
  == domain 1  score: 107.9 bits;  conditional E-value: 3.8e-34
  Asn_synthase   2 lrelLedaVkrrlradvpvGalLSGGlDSSliaalaarqsksplktFsigfeekgsdeakyakevaehlgtehtelvlteeellda.lpdviyhlee 97 
                   +r++L+d++++rl +d  vG++LSGGlDSSl   l  +q++++  ++++g   +gs++++ya+++a++lg++h  ++l ++++  a ++++i++ e 
    KIR61778.1 212 VRAALTDSIRMRLDTDLTVGVVLSGGLDSSLAL-LHTHQLHPDCVAVTVGA--PGSPDVAYARRLAADLGVPHEVIELRPRDIRLAdVREAIRISEL 305
                   799**************************9755.555555569********..*****************************96655******9999 PP

  Asn_synthase  98 ..pfadrsaiplyllsrlakrkgvkvvLsGeGaDElfgGYpyfyk 140
                        +  a+    ++r+++  gvkvvL+G+G+DElfgGYp++++
    KIR61778.1 306 teYGDIINAVVSVPIFRRLRDLGVKVVLTGDGSDELFGGYPMYHQ 350
                   7644455668888899999999*******************7765 PP

  == domain 2  score: 99.3 bits;  conditional E-value: 1.6e-31
  Asn_synthase 204 edelhrelyldlktllpgdllrkDrasmahglEaRvPflDhrlvevalrlppelklrggieKyiLRealegylPeeileRpKegfsapvgewklkge 300
                    ++++r ++ ++++l ++ l+r Drasmahg+EaRvPflD  +ve+a+rlp elklr+g+eK+i R+a++++lP+ + +RpK ++s+++g ++ ++ 
    KIR61778.1 353 PERARRLFLHKIRNLCRTELQRVDRASMAHGVEARVPFLDLSVVELAMRLPLELKLREGQEKWIVRRAFADVLPDYVRRRPKNPMSYSSGLHERARL 449
                   578899999*****************************************************************************98887733344 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.4   0.0   1.7e-42   3.9e-39       2     121 ..      44     160 ..      43     162 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.4 bits;  conditional E-value: 1.7e-42
    GATase_7   2 rrlsiidseagaQPmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllalleaewgeealerlnGmfAfaiwdeeekrlllaRDrlGik 100
                 rrl i+d e+  QP v s+d+rl +++nGe++N++elr+eL++ gh+fr++sDtev+la++e+ wge+a++rl+G++Af++++++++r +laRD+lG+k
  KIR61778.1  44 RRLRIVDRERAVQPWV-SADERLLLCYNGEVFNHRELRAELTRLGHAFRSESDTEVVLAAFER-WGEDAVRRLRGEYAFVVVERATGRAYLARDPLGVK 140
                 89**************.79******************************************98.*********************************** PP

    GATase_7 101 PLyygedkgdallfaSelkal 121
                 PLy+ + +g  l +aSe+kal
  KIR61778.1 141 PLYWSRVPG-CLHLASEVKAL 160
                 *******96.**********9 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.0   9.5e-35   2.1e-31      12     134 .]      37     156 ..      25     156 .. 0.91

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 9.5e-35
    GATase_6  12 devalaHvRlaivglaeeegaqPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevllalleelGeevlerlrGmfafaiwdkrentlil 110
                 ++++ + +Rl iv+ +   + qP +s+d+rlll +NGe+ n++elr+el +  g+afrs+sDtev+la++e++Ge++++rlrG +af+++++++++  l
  KIR61778.1  37 AGLLAGTRRLRIVDRE--RAVQPWVSADERLLLCYNGEVFNHRELRAELTR-LGHAFRSESDTEVVLAAFERWGEDAVRRLRGEYAFVVVERATGRAYL 132
                 44666788*******7..666******************************.*********************************************** PP

    GATase_6 111 ardrlgvkplyyavdesglafase 134
                 ard lgvkply++   + l  ase
  KIR61778.1 133 ARDPLGVKPLYWSRVPGCLHLASE 156
                 ************987777777776 PP

>> DUF3700  Aluminium induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.4e-06    0.0032     124     162 ..     109     147 ..     106     175 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.4e-06
     DUF3700 124 qvvkdleGkfafvlydskaktvfvaldadgsvplyWGia 162
                   v+ l+G++afv+ +  ++ +++a+d  g  plyW   
  KIR61778.1 109 DAVRRLRGEYAFVVVERATGRAYLARDPLGVKPLYWSRV 147
                 5799********************************754 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   9.5e-06     0.021       4      62 ..     232     287 ..     229     321 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.5e-06
                 EE--SSHHHHHHHHHHHHH-SEEEEEEEESS-TTSHHHHHHHHHHHHT--.-EEEEE-G CS
        QueC   4 vllSGGlDSttvlalakkegkevealtfdYgqrhkkeleaakkiakelgveehkildld 62 
                 v+lSGGlDS+ +l+  ++    + a+t+  g   + ++ +a+++a++lgv  h++++l+
  KIR61778.1 232 VVLSGGLDSSLALLHTHQLHPDCVAVTV--GAPGSPDVAYARRLAADLGV-PHEVIELR 287
                 89****************9999999887..8889999*************.99999987 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.4e-05     0.076       2      70 ..     229     286 ..     228     290 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.4e-05
  tRNA_Me_trans   2 kvvvalSgGVDSsvaaallkeqgyevigvflklweeedeegkeccaeedlkdaervaeklgiplevvdf 70 
                    +v v lSgG DSs+a++  ++   ++++v++             + + d+++a+r a  lg+p+ev+++
     KIR61778.1 229 TVGVVLSGGLDSSLALLHTHQLHPDCVAVTVGA-----------PGSPDVAYARRLAADLGVPHEVIEL 286
                    6899*****************999*99998643...........4456888899999999999988876 PP

>> LPD22  Large polyvalent protein associated domain 22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.7   3.8e+03      13      25 ..     203     215 ..     200     217 .. 0.84
   2 ?   10.3   0.0   0.00028      0.62      17      56 ..     266     307 ..     256     319 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.7
       LPD22  13 enPDeaAralrla 25 
                  +PDeaA + r+a
  KIR61778.1 203 DDPDEAALLVRAA 215
                 69*****999988 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00028
       LPD22  17 eaAralrlaeelGlppdvvernleaferaa..eaedwdalle 56 
                 ++A a+rla +lG+p +v+e  + +++ a+  ea+++ +l+e
  KIR61778.1 266 DVAYARRLAADLGVPHEVIELRPRDIRLADvrEAIRISELTE 307
                 48******************9998887666777777777665 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00019      0.42       4      84 ..     215     289 ..     212     310 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00019
                   HHHHHHHHHHHHCTTSEEEEEE-SSHHHHHHHHHHHHHHTCGEEEEEE--SSSTTHHHHHHHHHHHHHHTSEEEE---HHH CS
  NAD_synthase   4 elvdflkeyvkkagakgvvlGlSGGvDSslvaalavkalgkenvlalllPssvsseedvedalalaenlgievktidikpi 84 
                   +l+d+++  +++    gvv  lSGG+DSsl+  l  + l +   +a+ +        dv  a+ la +lg+  ++i+++p 
    KIR61778.1 215 ALTDSIRMRLDTDLTVGVV--LSGGLDSSLA-LLHTHQL-HPDCVAVTV--GAPGSPDVAYARRLAADLGVPHEVIELRPR 289
                   5667777777777777777..6*******95.6777777.556667777..344456899999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3727.77
//
Query:       KIR61779.1  [L=77]
Description: hypothetical protein TK50_30155 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 562.32
//
Query:       KIR61780.1  [L=1004]
Description: alpha-amylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-62  205.8  34.4    2.2e-35  121.1   7.4    3.4  3  CBM_25         Carbohydrate binding domain (family 25)
    1.8e-40  139.5   6.9      9e-23   81.4   0.2    3.2  3  Alpha-amylase  Alpha amylase, catalytic domain
    4.7e-18   65.5   1.8    1.1e-08   35.5   0.3    2.9  2  CBM53          Starch/carbohydrate-binding module (family 53)
    2.3e-06   27.7   5.1    3.7e-05   23.9   1.0    2.8  2  CBM26          Starch-binding module 26
    0.00088   19.6   0.2     0.0026   18.1   0.2    1.8  1  fn3            Fibronectin type III domain
  ------ inclusion threshold ------
       0.85   10.3   2.9       0.43   11.3   0.2    1.9  2  DUF1093        Protein of unknown function (DUF1093)
        1.1    9.5   5.3        8.2    6.6   0.4    2.4  2  CBM_21         Carbohydrate/starch-binding module (family 21)


Domain annotation for each model (and alignments):
>> CBM_25  Carbohydrate binding domain (family 25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5  10.9   3.8e-31   9.7e-28       3     101 ..      32     128 ..      30     132 .. 0.93
   2 !  121.1   7.4   8.7e-39   2.2e-35       6     105 .]     148     247 ..     143     247 .. 0.96
   3 ?   -2.9   1.1       3.3   8.4e+03      61      81 ..     770     790 ..     758     817 .. 0.66

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 3.8e-31
      CBM_25   3 GnkvtvyystrkkGftsayihyrpaGGswtavpGvkmrdaeaGyakkdvdlGaassleaafndGnnvwdsnktkdyslsaGvstvadntvtadaddtia 101
                  n vtvyy   +    + +ihy p GG+wtavpGv m++a++G+ k+++d G+a+ l+  fn+  ++wd+n++++y   +G+ tv+ + v+  ++d++a
  KIR61780.1  32 ANTVTVYYRPPTAWTGTVNIHYAPDGGAWTAVPGVAMEAACTGWRKRTIDAGSATGLQVVFNNNAGTWDNNNGANYRTGTGTVTVSGGVVG--TSDPCA 128
                 799*****7777766799**********************************************************************999..788887 PP

  == domain 2  score: 121.1 bits;  conditional E-value: 8.7e-39
      CBM_25   6 vtvyystrkkGftsayihyrpaGGswtavpGvkmrdaeaGyakkdvdlGaassleaafndGnnvwdsnktkdyslsaGvstvadntvtadaddtiaeev 104
                 + v+y   ++G+t  +ihy+paGG+wtavpGv m++ ++G+a++ vdlG+a++l+aafn+G ++wd+n+++dy++ aGvstv  + vta a+ ++a ++
  KIR61780.1 148 AEVWYHLATRGWTGGNIHYQPAGGAWTAVPGVPMEAGCTGWARRVVDLGSAATLKAAFNNGAGAWDNNNGADYTIGAGVSTVKAGVVTAGASAPCAPQT 246
                 6799*******************************************************************************************9877 PP

      CBM_25 105 p 105
                 p
  KIR61780.1 247 P 247
                 6 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.3
      CBM_25  61 aafndGnnvwdsnktkdysls 81 
                  a+ +G +  ds + + y + 
  KIR61780.1 770 NAYGNGKDSDDSYNDATYNVV 790
                 567777777777777777653 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.2   3.5e-26     9e-23       1      79 [.     398     479 ..     398     523 .. 0.90
   2 !   44.0   0.1   7.9e-15     2e-11     138     224 ..     605     689 ..     550     728 .. 0.75
   3 !   16.4   0.2     2e-06    0.0051     267     333 ..     776     839 ..     748     843 .. 0.80

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 3.5e-26
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE..-S-TTTTSS-SCECCE-CCC--C.CCCCCHHHHHHCTT-EEEEEE--SC--T CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifk..spqadhgYdiadytkidpefGtn.edlkeLiskahekgikvilDlVvNHtsd 79 
                    GD+kG+i+kLdY+k+LG++a+w++P++   s+++ hgY+  d++ +dp+     +  + Li++ah kgik++ D+V NH+s 
     KIR61780.1 398 GDFKGLIDKLDYIKGLGFSALWITPVVLnrSDYDFHGYHGWDFYRVDPRLESPgASYQDLINAAHGKGIKIFQDVVYNHSSR 479
                    9*************************987788999***************87526789**********************97 PP

  == domain 2  score: 44.0 bits;  conditional E-value: 7.9e-15
                    -TTS-BB-TTTCCCCCCCCCCCCCCCTTT-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHH.HHHTCCGTT-EEEEE-TT-SCCCHCC CS
  Alpha-amylase 138 lkklpdLnteneevrkelkdvvkfwlekgidGfRlDvvkhvskvealesngeflheftqal.netvasrkevmtvgEvssdasedlrv 224
                    +++l+d+nten++v+k+l d+++++++ g+dGfR+D++ h++    ++ n  fl  ++q +  +  ++ k+++++gEv    +++ ++
     KIR61780.1 605 HEDLADFNTENPTVQKYLIDAYNRYIDMGVDGFRIDTAVHIPR---VTWNRRFLPAIQQHAlARHGEKGKDFYVFGEVAAFVNDKWNR 689
                    5789***************************************...44555555554443303334489*********9876654333 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 2e-06
                    HHHHHHS-CCCTTCEEES--TTS--HHHHTTSSTTTTHHHHHHHHHCCCTSSSEEEEETTCCCT--- CS
  Alpha-amylase 267 kkwlkaleeaaeeavtflgnHDqeRilsrlgddsaeaekklklaaillltlrGvpviYyGeEigmtg 333
                    k++ +++++ a+ +v+++++HD     s++ ++    +      + l+ t+rG+p  YyG Ei ++ 
     KIR61780.1 776 KDSDDSYND-ATYNVVYVDSHDYGPNKSNTRYTGG--TDAWAENMSLMWTFRGIPTLYYGSEIEFQK 839
                    566677887.99***********999999888885..4455556678999*************8865 PP

>> CBM53  Starch/carbohydrate-binding module (family 53)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.3   4.2e-12   1.1e-08       1      78 [.      35     108 ..      35     110 .. 0.89
   2 !   28.1   0.1   8.7e-10   2.2e-06      11      79 ..     148     222 ..     140     224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 4.2e-12
       CBM53   1 vkvyYnksl..akevtlhygfn..gWkssqdvamtksassgdseedwfeatvtvpkeaseldfvf.dsegeenWDNNngqnYk 78 
                 v+vyY++    +  v +hy  +   W+ ++ vam+ +       ++w + t++  + a+ l+ vf +  ++++WDNNng+nY+
  KIR61780.1  35 VTVYYRPPTawTGTVNIHYAPDggAWTAVPGVAMEAA------CTGWRKRTIDAGS-ATGLQVVFnN--NAGTWDNNNGANYR 108
                 799****9955555*******8778************......799*********9.899*****44..5************7 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 8.7e-10
       CBM53  11 kevtlhygfngWkssqdvamtks.........assgdseedwfeatvtvpkeaseldfvfdsegeenWDNNngqnYkv 79 
                  ev++h+ + gW+   ++  +++          +++ + ++w    v++ + a +l+ +f+ +g++ WDNNng++Y++
  KIR61780.1 148 AEVWYHLATRGWTGG-NIHYQPAggawtavpgVPMEAGCTGWARRVVDLGS-AATLKAAFN-NGAGAWDNNNGADYTI 222
                 569*********988.55666668899999985677788889999999999.789*****4.47************97 PP

>> CBM26  Starch-binding module 26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   1.0   1.5e-08   3.7e-05       1      61 [.      37      97 ..      37     104 .. 0.87
   2 ?    4.5   0.2     0.016        41      21      60 ..     171     209 ..     152     217 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.5e-08
                EEEE--TTS-.SEEEEEEEEES-----.-TT--B-EEEETTEEEEEETT-..SEEEEEEEESSS CS
       CBM26  1 vyfknpsnWs.nvyiYiwddspassvkeaWPGvamkkegdgwysytleee..esakvIFnnggs 61
                vy++ p+ W+ +v+i++  d +a +   a PGvam++  +gw + t+++   + ++v+Fnn+ +
  KIR61780.1 37 VYYRPPTAWTgTVNIHYAPDGGAWT---AVPGVAMEAACTGWRKRTIDAGsaTGLQVVFNNNAG 97
                8***************876666444...56********************888********943 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.016
                 S-----.-T...T--B-EEEETTEEEEEETT-..SEEEEEEEESS CS
       CBM26  21 passvkeaW...PGvamkkegdgwysytleee..esakvIFnngg 60 
                 +      aW   PGv+m++  +gw    ++    +++k  Fnng 
  KIR61780.1 171 G------AWtavPGVPMEAGCTGWARRVVDLGsaATLKAAFNNGA 209
                 2......34444************6555555443899999**994 PP

>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.2     1e-06    0.0026       2      81 ..     254     328 ..     251     332 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1e-06
                 CECEEEEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTSTEEEEEECSTSSEEEEESSSTTEEEEEEEEEEETSE.E CS
         fn3   2 aPsnlsvsevtstsltvsWeppkdgggpitgYeveyrekgseeewneftvprtttsvtltgLkpgteYevrVqavnggg.e 81 
                  P++l +++ ++  + vsW +  + ++ +tgY+++      e+ ++++t ++t+  ++   L+++t+Ye +V+a+ ++g +
  KIR61780.1 254 TPTGLGATA-NGLRVAVSWAAA-TDDRAVTGYRLTRTGG-PEG-TVTVTTTGTS--HVDGTLTANTRYEYTVRAYDAAGnT 328
                 567776776.666788999999.7**********54433.333.5666666666..77788**************999744 PP

>> DUF1093  Protein of unknown function (DUF1093)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00017      0.43      11      44 ..     296     328 ..     287     331 .. 0.73
   2 ?   -3.0   0.2         5   1.3e+04      20      36 ..     706     724 ..     702     725 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
                 E--S-..EEEETTEE-EE.TEEEEEEEEEETT--E CS
     DUF1093  11 kittegekkkekkddgek.tsYkYtlkaydedGke 44 
                  +tt g+ + + +      t+Y+Yt+ ayd+ G++
  KIR61780.1 296 TVTTTGTSHVDGTLT--AnTRYEYTVRAYDAAGNT 328
                 455555555544444..249*************87 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5
                 EETTEE-EE..TEEEEEEE CS
     DUF1093  20 kekkddgek..tsYkYtlk 36 
                 +++ dd +   ++Y+Y++ 
  KIR61780.1 706 EYSPDDVKAaiEQYDYEQL 724
                 4444443334799***986 PP

>> CBM_21  Carbohydrate/starch-binding module (family 21)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.4    0.0032       8.2      98     111 ..      95     108 ..      77     109 .. 0.78
   2 ?    4.6   0.6     0.014        36     100     112 ..     210     222 ..     202     223 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0032
      CBM_21  98 eeeyWdnNegkNYe 111
                 ++  WdnN+g+NY+
  KIR61780.1  95 NAGTWDNNNGANYR 108
                 3445*********6 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.014
      CBM_21 100 eyWdnNegkNYev 112
                   WdnN+g++Y++
  KIR61780.1 210 GAWDNNNGADYTI 222
                 46*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1004 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.50
# Mc/sec: 6029.46
//
Query:       KIR61781.1  [L=333]
Description: choloylglycine hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-09   38.5   0.0    1.9e-09   37.7   0.0    1.4  1  CBAH      Linear amide C-N hydrolases, choloylglycine hydrola
    1.3e-08   34.8   0.0    9.8e-08   32.0   0.0    2.0  2  AAT       Acyl-coenzyme A:6-aminopenicillanic acid acyl-trans
  ------ inclusion threshold ------
      0.091   13.3   3.4       0.43   11.2   3.4    2.3  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> CBAH  Linear amide C-N hydrolases, choloylglycine hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   3.1e-13   1.9e-09       3     168 ..      88     245 ..      86     256 .. 0.69

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 3.1e-13
                 EEEEE-TTS-EEEEEEEEESS--S-EEEEE-TT-EEECTTTCEEEE-SS-EEEEEEE......SSSEE.EESEEEETTS-EEEEEE-TTT---BSS--T CS
        CBAH   3 sllledkkgkllfgRnmDfeisldeeviivprnyklnleklkkllvtkdavvGmgtk......vesyP.lfvdglNEkGlsiaglylaeyaeykkepke 94 
                   ++  +  + lf+Rn+D+  +    +    r+ + +  +  +l  +  +++G+g++      + + P l +dg+NE+Gl + gl     a+ + e  +
  KIR61781.1  88 LFAASGDRSRPLFARNFDWDANPALVL----RTDPPDGYAAVSL--VDMSYLGVGADptgdrrLLNAPlLPFDGMNERGLAV-GLAADDGATVRAE--A 177
                 555566667788999999987766555....3333333333332..23345555543111111456785669*******987.6666666666666..7 PP

                 TSEEEEGGGHHHHHHHH-SSHHHHHHHHTTEEEB---CTCCSS---EEEEEE-TTS-EEEEEEETTEEEEEESS CS
        CBAH  95 dkvniaagelirwvlenftsveevkeklkklkivnealdilgakaplHwiisDasgesivieerkegLkvydne 168
                 +k  + ++ ++r vl+++++v+e+ +   + ++      + ++ +plH++++Da+g s+v+e + + + v +++
  KIR61781.1 178 GKPTVGSVRILRLVLDQAATVDEAVAVFGRHNL------DFDGGPPLHYLLADATGASAVVEFVDGAMRVEKGQ 245
                 8999********************998877664......556778*********************99997765 PP

>> AAT  Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.093   5.6e+02       5      19 ..      96     110 ..      91     135 .. 0.71
   2 !   32.0   0.0   1.6e-11   9.8e-08      48     124 ..     154     238 ..     152     254 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.093
                 E..EEEEEEEE-S-S CS
         AAT   5 dgkllgrNeDldpet 19 
                 ++ l++rN+D+d + 
  KIR61781.1  96 SRPLFARNFDWDANP 110
                 3349******88765 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 1.6e-11
                 EEEETTS-EEEE.....-TTS-TTT---------HHHHHHH.--SHHHHHHTHHHH....TTTS-SEEEEEEETTEEEEEEE-SSS CS
         AAT  48 dGiNeaGLavti.....nllslkklrakGfprafitRllLekcesveeAvellkei....praaginyivldaagnaavveveass 124
                 dG+Ne GLav++      +++++      +++  i Rl+L+++++v+eAv+++ ++    + +   +y+++da g  avve+ ++ 
  KIR61781.1 154 DGMNERGLAVGLaaddgATVRAEAG-KPTVGSVRILRLVLDQAATVDEAVAVFGRHnldfDGGPPLHYLLADATGASAVVEFVDGA 238
                 7***********9999888888888.8899***************************998888899**************997765 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   3.4   7.2e-05      0.43       1      16 [.       1      16 [.       1      20 [. 0.94

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.2e-05
      LPAM_1  1 MKKillalgalllLsG 16
                M++++l +g++llL++
  KIR61781.1  1 MRRTFLGAGLALLLAA 16
                **************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2234.66
//
Query:       KIR61782.1  [L=524]
Description: hypothetical protein TK50_30190 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00018   21.9   0.1     0.0019   18.6   0.1    2.6  2  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.1e-07    0.0019       5     139 ..     172     312 ..     169     326 .. 0.78
   2 ?   -1.2   0.0      0.13   2.3e+03      88     121 ..     335     367 ..     327     374 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.1e-07
                  SEESS--TTTSCCTT.......HHHHHHHHHHHHHHHHHHHHHHHH..HTT.SEEEEEESSTGGGSTTHHHHHHHHHHTC..CCTEEEEEEECSSCHG CS
                  xxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxx..xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
  Radical_SAM   5 rgCnlrCsfCarpet.......vrregrgrslsveeileevkelka..ekg.vkevilgggepllypdfvellerlakla..vpgiritvetngtlpd 90 
                   gC+l+C +C+r+e        +++e++g   + + +++++    +   +    +++++  e +l +   + +++l  l+      r++++t +tl  
   KIR61782.1 172 IGCPLMCAYCYRREGdtvdgylGAWEPTGFLEPEDVVARLLSHP-WftPHHtPIGLHMSTSEAFLPKLWPRTWRALQLLDdlGLTNRVSCITKYTLS- 267
                  69*******************77777777777777777777443.3112223667788888888887777777777777777888999999999998. PP

                  HHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  91 eeklerllelgvdrvslgleaaddekvlklmnrghtfeevlealeklre 139
                  +e+++ l    + +v l+++        + +  ++ +e++l+ l+++ +
   KIR61782.1 268 DEQIDCLES--LVHVDLDVNVCYAA-MPESI-EPPHRERRLRFLRRILQ 312
                  99**99999..66999999999999.89999.66888999998888765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.13
                  CHGHHHHHHHHHTT.-SEEEEEEBSSSHHHHHHHH CS
                  xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  88 lpdeeklerllelg.vdrvslgleaaddekvlklm 121
                  ++ + ++++++++g  ++v  gl+ add  ++  m
   KIR61782.1 335 HL-RHVWQAFRDAGaRTVVLGGLKFADDH-IQSFM 367
                  44.67788888888777777777777777.77766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3773.44
//
Query:       KIR61783.1  [L=696]
Description: hypothetical protein TK50_30195 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00091   19.1   0.0     0.0019   18.0   0.0    1.5  1  Glycos_transf_2  Glycosyl transferase family 2
  ------ inclusion threshold ------
       0.14   12.6   1.3        1.7    9.2   0.0    3.1  3  PSD3             Protein of unknown function (DUF1587)


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.1e-07    0.0019      56     124 ..     481     553 ..     462     597 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.1e-07
                      EEEEEESSS-.HHHHHHHHHHHH--SS...EEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCC CS
  Glycos_transf_2  56 vrvirreenv.Gkagalnaglraatgd...yilflDaDdepdpdwleklvealekdgadvvlgqrprifgetd 124
                      v++  r+    +k+ga+ +gl++  g    ++++ D D++++ + l   v+al+++g+++v+g+r+r +++ +
       KIR61783.1 481 VTITARPDDAsAKGGAVLWGLAQLLGTgssVLAYTDLDLTYPLEQLGLHVAALDEPGVGAVIGSRRRPDSHGY 553
                      555555555569**************999************************************99887655 PP

>> PSD3  Protein of unknown function (DUF1587)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.9   1.7e+04      11      23 ..      41      53 ..      40      54 .. 0.80
   2 ?    0.1   0.2      0.13   1.1e+03      45      62 ..     232     249 ..     197     251 .. 0.70
   3 ?    9.2   0.0   0.00019       1.7       8      27 ..     566     586 ..     563     591 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.9
        PSD3 11 TvrDLlgvdldla 23
                T+r Ll ++ +++
  KIR61783.1 41 TIRALLSITAAPT 53
                9*****9987765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.13
        PSD3  45 spllleqYldaAeeiade 62 
                 +p+++ q l++Ae++a++
  KIR61783.1 232 TPAQAGQALALAETAAAH 249
                 588999999999999876 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00019
        PSD3   8 YenTvrDLlgvdl.dlaaslp 27 
                 Y+++vrDLl++d+ d+ a + 
  KIR61783.1 566 YQRAVRDLLQLDVgDPQAGFK 586
                 9************99888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 5165.77
//
Query:       KIR61784.1  [L=268]
Description: hypothetical protein TK50_30200 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-14   53.5   0.0    3.1e-14   53.2   0.0    1.1  1  NTP_transferase  Nucleotidyl transferase
    1.5e-05   25.4   2.5    4.8e-05   23.8   2.5    1.9  1  NTP_transf_3     MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   3.5e-18   3.1e-14      10     247 ..       2     262 ..       1     263 [. 0.84

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 3.5e-18
                      -GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTH.HHHHHHHTTSGGGT.....................SEEEEEEES CS
  NTP_transferase  10 GtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehs.flveeqlkegskfg.....................vevlialep 81 
                      G+R++P+ +t+ k ++p+l++ +++ + +  ++++g ++i +v+ + +    v+ +++e  +++                      + +++ +p
       KIR61784.1   2 GSRFFPIGKTINKCMLPILNQ-PVVAYAVADCVAAGARDIAIVTAPGEPgRQVRHYFSEDRDLKdyfttrgwqdkyasvadlhtqATFTFLEQP 94 
                      9********************.*****************999999866515566667777777799999*************977777777777 PP

                      S--..BGGHHHHHTHHHHTTSSE..EEEEETTEEEEST....THHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEECTTS..BEEEEECS-S CS
  NTP_transferase  82 egk..gtAdAvalaaelledeksdelvlvLggDhlikd....ayeeavkkaiekaakgtvtfgivpveeateyGvieadeeg..rverfvEKPk 167
                        +  gtA + ++aae+++ ++    +lv g+D l +     ++ ++ +  +++a    ++ ++vp  ea +yG+  +  +g     ++ EKP+
       KIR61784.1  95 RDDryGTALPAIVAAEFIAGDDF---LLVAGDDLLLRRdggsDLADLSAARTAAAVPAALAAATVPGTEAHRYGILHPRAGGhqLLDELLEKPN 185
                      777*****99999*****99996...**********9987666666555555555545889999************9995554499******** PP

                      SHSH.CSEECCSEEEEETTHHHHHHHCCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE-EEEXSSHHHHHHHHHHHHH CS
  NTP_transferase 168 eaka.selassGiYvfnsevllflakdleelkrgedeitdilpkaleegkvalaflfkdaeyWsDvGtldslleaneklae 247
                      +    + +++    +    +l +  ++l++ ++ge + td++ +  ++++v      +++    D G++   l an++ a+
       KIR61784.1 186 NYGEpTAYINISRTLLPAHALAYF-QKLTPAPNGEYQATDAVIAFARDHDVLIH-PVTGE--YHDCGNPAGWLAANNAAAQ 262
                      865437899999889999888888.55*****************9999998877.55562..6899999999999888765 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   2.5   5.3e-09   4.8e-05       9     138 ..       2     177 ..       1     267 [. 0.69

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 5.3e-09
                   -TTT...TT..THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSH....CHHHH.........................HHTTC..TS-EEE-TTS. CS
  NTP_transf_3   9 SsRm...gg..dKallplggkpllervldalraagvdevvvvggd....eevla.........................alarl..gvrvvededp. 68 
                   +sR+   g+  +K++lp+ ++p+++++++   aag++++ +v+ +    ++v++                         +   l  +++++  e+p 
    KIR61784.1   2 GSRFfpiGKtiNKCMLPILNQPVVAYAVADCVAAGARDIAIVTAPgepgRQVRHyfsedrdlkdyfttrgwqdkyasvaD---LhtQATFTFLEQPr 95 
                   67776666568*******************************98843223444477777777777777777777764432...22245555445551 PP

                   S-SHHHHHHHHHHHH...SSSCEEEEETT-TT--HHHHHHHHHCHHHHT.....SSEEEEESSSEE......EECCEEEGGGH CS
  NTP_transf_3  69 gkgplaslaaalraaa..dadavlvlacDmPlltpelverllaaaaasg.....advvvptyeger......ghpllfrarll 138
                   +   + +l a ++a +    d +l++a+D  ll+++    l++  aa+      a+ +++t  g++       hp +   +ll
    KIR61784.1  96 DDRYGTALPAIVAA-EfiAGDDFLLVAGDDLLLRRDGGSDLADLSAARTaaavpAALAAATVPGTEahrygiLHPRAGGHQLL 177
                   44455555555544.3348999*************998888887764441112233333333333344455533333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1840.27
//
Query:       KIR61785.1  [L=343]
Description: hypothetical protein TK50_30205 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2804.50
//
Query:       KIR61786.1  [L=409]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-21   76.6   3.8    1.6e-21   76.6   3.8    2.1  2  HisKA_3          Histidine kinase
    1.3e-05   25.6   0.0    4.7e-05   23.9   0.0    2.0  1  HATPase_c        Histidine kinase-, DNA gyrase B-, and HSP90-
    2.5e-05   24.2   0.0    2.5e-05   24.2   0.0    2.4  2  HATPase_c_2      Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
        2.2    7.8   3.8          1    8.9   0.3    2.0  2  DUF4225          Protein of unknown function (DUF4225)


Domain annotation for each model (and alignments):
>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   3.8   3.6e-25   1.6e-21       1      66 [.     182     247 ..     182     249 .. 0.98
   2 ?   -3.2   0.0       2.9   1.3e+04      49      66 ..     271     288 ..     255     290 .. 0.59

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 3.6e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLrpa 66 
                 ER+riARELHD+v++s++++ +q++ a++l+++dp+ a+e++r ++++ r+al+e+Rrl++ Lr++
  KIR61786.1 182 ERTRIARELHDVVAHSMAVMIVQADGARYLFDRDPQTAREAVRVVADTGRQALEEMRRLVGVLRET 247
                 9***************************************************************76 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHHHHHTTH CS
     HisKA_3  49 arealqevRrllhnLrpa 66 
                  r al e+ +ll ++r a
  KIR61786.1 271 RRPALVELPELLDRFRAA 288
                 455666666777777755 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.1e-08   4.7e-05       3      54 ..     308     359 ..     306     401 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.1e-08
                 HHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHH CS
   HATPase_c   3 ekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedl 54 
                 e  ++++++++++Na+k+a+ + ++++ ++ + d +v++v D+G+G p+   
  KIR61786.1 308 ELTVYRVVQEALTNALKHAGVGATVTLGLTHTPDAVVVRVVDDGRGRPVVRP 359
                 567899************9999999999997669************998554 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   4.9         2   9.1e+03       8      46 ..     150     189 ..     145     239 .. 0.68
   2 !   24.2   0.0   5.7e-09   2.5e-05      31      85 ..     310     362 ..     264     380 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2
  HATPase_c_2   8 vrtvrevaeavlrr.aglseelldeirlaveEactNaveh 46 
                  vrt r ++ ++ +r a l+ e+ +e r av+E  t++ + 
   KIR61786.1 150 VRTRRLYVLSLEERaATLEREREAEARAAVAEERTRIARE 189
                  7888888888866659999999999999999988888764 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 5.7e-09
  HATPase_c_2  31 eirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpg.fdpetlpd 85 
                   +  +v+Ea+tNa +ha  +   ++v++ l+++++a++v+v D+G+g   ++++p 
   KIR61786.1 310 TVYRVVQEALTNALKHAGVG---ATVTLGLTHTPDAVVVRVVDDGRGrPVVRPAPS 362
                  566689************96...55**********************444444443 PP

>> DUF4225  Protein of unknown function (DUF4225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4      0.24   1.1e+03      46      58 ..      68      80 ..      61      91 .. 0.73
   2 ?    8.9   0.3   0.00023         1      25      82 ..      93     149 ..      86     178 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.24
     DUF4225 46 vVagglqivaGva 58
                 V++g+q+vaG +
  KIR61786.1 68 AVLAGVQVVAGWG 80
                4677888888875 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00023
     DUF4225  25 yvvvei..keenkvikyvikgigvVagglqivaGvalvskasetvvgavaGalLilhGan 82 
                 y vv+   + +++++  v++++gvV+++lqi a va    as      ++Ga+  l G n
  KIR61786.1  93 YSVVKYaeRLRDGIVAGVVAAVGVVLAALQIEAAVAWW--ASAIWFALMTGAV-WLMGLN 149
                 55666643557999******************999988..4444444444443.344555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1073  (0.0598472); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 2585.09
//
Query:       KIR61787.1  [L=221]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-27   93.8   0.1    1.1e-26   93.1   0.1    1.3  1  Response_reg   Response regulator receiver domain
    6.2e-20   70.5   0.4    9.8e-20   69.9   0.4    1.3  1  GerE           Bacterial regulatory proteins, luxR family
    7.7e-13   47.9   0.8    1.6e-12   46.9   0.3    1.8  2  Sigma70_r4_2   Sigma-70, region 4
      8e-06   25.3   1.2      8e-06   25.3   1.2    1.9  2  Sigma70_r4     Sigma-70, region 4
    1.8e-05   24.4   0.1    3.4e-05   23.5   0.1    1.4  1  HTH_38         Helix-turn-helix domain
    0.00021   21.0   1.3    0.00043   20.0   0.3    2.1  2  HTH_23         Homeodomain-like domain
    0.00066   19.2   0.1     0.0013   18.2   0.1    1.5  1  HTH_24         Winged helix-turn-helix DNA-binding
     0.0069   16.8   0.1      0.013   15.9   0.1    1.4  1  HTH_40         Helix-turn-helix domain
  ------ inclusion threshold ------
      0.017   14.9   0.3      0.041   13.7   0.3    1.6  1  DUF742         Protein of unknown function (DUF742)
      0.022   14.8   0.1      0.066   13.2   0.1    1.8  1  HTH_29         Winged helix-turn helix
      0.026   14.4   0.1      0.051   13.5   0.1    1.4  1  Sigma70_ECF    ECF sigma factor
      0.035   13.9   0.1      0.087   12.7   0.1    1.7  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
      0.049   13.7   0.6       0.15   12.1   0.6    2.0  1  HTH_20         Helix-turn-helix domain
      0.059   13.5   0.2       0.17   12.0   0.2    1.8  1  HTH_28         Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.1   8.8e-30   1.1e-26       1     112 []       5     119 ..       5     119 .. 0.96

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 8.8e-30
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealkaga 94 
                   v+ivdD+ lvr+++r +l  + ++++v+ea dg++al+ l++ + d++++Di+mp+mdG+e++++i ++   + ++v++lt+ ++e+da +al+aga
    KIR61787.1   5 VVIVDDQALVRAGFRMVLGsQPDLTVVGEAIDGADALRVLDRVEADVVVMDIRMPTMDGVEATRRICADRpgDRPRVLVLTTFDTEADAFAALQAGA 101
                   79*****************999********************************************66664788*********************** PP

                   SEEEESSG-HHHHHHHHH CS
  Response_reg  95 ddflsKpfdpeeLlkale 112
                   ++fl K + peeLl+a++
    KIR61787.1 102 SGFLLKNVPPEELLAAIR 119
                   **************9985 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.4   7.6e-23   9.8e-20       2      57 .]     156     211 ..     155     211 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 7.6e-23
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 +L++REre+L l+a+G+sn eIA++ +++e TVk+h+++i+ KL++++rv++v+la
  KIR61787.1 156 QLTEREREILLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKLGLRDRVQAVVLA 211
                 7****************************************************987 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.3   1.3e-15   1.6e-12       8      54 .]     154     199 ..     151     199 .. 0.97
   2 ?   -2.9   0.0       4.4   5.6e+03      17      27 ..     206     216 ..     203     216 .. 0.79

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.3e-15
                   HTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   8 laeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   la+L+er+rei+ll   +gls +EIA++ ++ e+tVk+++ R ++kL
    KIR61787.1 154 LAQLTEREREILLL-VAQGLSNAEIAARVHVAEATVKTHVGRILAKL 199
                   89************.79****************************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.4
                   HHHHHHHTS-- CS
  Sigma70_r4_2  17 eifllrylegl 27 
                   ++++l y+ gl
    KIR61787.1 206 QAVVLAYESGL 216
                   68889899886 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       2.2   2.8e+03       1      15 [.      40      54 ..      40      54 .. 0.88
   2 !   25.3   1.2   6.2e-09     8e-06       2      48 ..     154     199 ..     153     200 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.2
                HHHHS-HHHHHHHHH CS
  Sigma70_r4  1 aLasLpererevlel 15
                aL++L+  e +v+++
  KIR61787.1 40 ALRVLDRVEADVVVM 54
                799999999999986 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 6.2e-09
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 La+L+erere+l l+  +gl+ +EI++r ++ + +V+ +  r l kL
  KIR61787.1 154 LAQLTEREREILLLV-AQGLSNAEIAARVHVAEATVKTHVGRILAKL 199
                 89**********998.5999*************************99 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   2.7e-08   3.4e-05       4      41 ..     156     192 ..     155     194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.7e-08
      HTH_38   4 hLsleeReeIerllaeGlslreIArrLgrspsTIsREl 41 
                 +L+  eR eI  l a+Gls++eIA r++++  T+  ++
  KIR61787.1 156 QLTERER-EILLLVAQGLSNAEIAARVHVAEATVKTHV 192
                 7999999.9************************98776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.3   3.4e-07   0.00043       9      35 ..     163     189 ..     155     197 .. 0.88
   2 ?   -2.9   0.0         5   6.4e+03       5      17 ..     202     215 ..     201     216 .. 0.57

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.4e-07
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTvy 35 
                 +illl+a+Gls +eIA++ +v + Tv 
  KIR61787.1 163 EILLLVAQGLSNAEIAARVHVAEATVK 189
                 5************************96 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5
      HTH_23   5 reRlrillllae.G 17 
                 r+R +++ l+ e G
  KIR61787.1 202 RDRVQAVVLAYEsG 215
                 56677666665435 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1     1e-06    0.0013       3      40 ..     159     194 ..     157     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1e-06
      HTH_24   3 etdrkILelLqknprisqreLAerlglSpstvnrrlkr 40 
                 e +r+IL l+ +  ++s++e+A r+++  +tv++++ r
  KIR61787.1 159 EREREILLLVAQ--GLSNAEIAARVHVAEATVKTHVGR 194
                 677888888888..*********************976 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1     1e-05     0.013       7      39 ..     166     198 ..     161     212 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1e-05
      HTH_40   7 elleeglsieeIAkerglkesTIegHLaeliee 39 
                  l+ +gls +eIA++ +++e+T+ +H+ +++ +
  KIR61787.1 166 LLVAQGLSNAEIAARVHVAEATVKTHVGRILAK 198
                 5779***********************998765 PP

>> DUF742  Protein of unknown function (DUF742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.3   3.2e-05     0.041      35      81 ..     151     197 ..     144     211 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.2e-05
      DUF742  35 apeaarlqpehrailrLcreplsVaelaAelklPvgvvrvLlsdLld 81 
                  p+ a+l++ +r+il L+++ ls ae+aA++++  ++v+  ++ +l+
  KIR61787.1 151 DPRLAQLTEREREILLLVAQGLSNAEIAARVHVAEATVKTHVGRILA 197
                 4566789999**********************999999988876655 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   5.2e-05     0.066       3      35 ..     163     194 ..     162     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.2e-05
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvyrwlkr 35 
                 ++lll+a+G+s  ++iA+++ + + tv +++ r
  KIR61787.1 163 EILLLVAQGLS-NAEIAARVHVAEATVKTHVGR 194
                 69********8.***************888766 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1     4e-05     0.051     139     172 ..     159     192 ..     151     204 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4e-05
  Sigma70_ECF 139 eqarlvelrkleGlsveEiAeklgvskrtverrl 172
                  e  r++ l + +Gls++EiA+++ v+++tv+ + 
   KIR61787.1 159 EREREILLLVAQGLSNAEIAARVHVAEATVKTHV 192
                  5678999999********************9765 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   6.8e-05     0.087      18      35 ..     172     189 ..     165     195 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.8e-05
  HTH_AsnC-type  18 isyaeLAervGlSestvl 35 
                    +s+ae+A+rv+++e+tv 
     KIR61787.1 172 LSNAEIAARVHVAEATVK 189
                    69**************97 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   0.00012      0.15      14      53 ..     163     201 ..     113     205 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
                 HHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHH.HHHHHCTT CS
      HTH_20  14 rilraLaraegltaselaerldlskntlsyHL.rvLeeagL 53 
                 +il +   a+gl+ +e+a+r+ ++ +t+  H+ r+L++ gL
  KIR61787.1 163 EILLLV--AQGLSNAEIAARVHVAEATVKTHVgRILAKLGL 201
                 566666..9***************************99987 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   0.00013      0.17       4      35 ..     163     194 ..     162     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
      HTH_28   4 eiikllaaGhsvreaArelgisrrtvyrWikr 35 
                 ei++l+a+G s +e+A+++++ + tv+  + r
  KIR61787.1 163 EILLLVAQGLSNAEIAARVHVAEATVKTHVGR 194
                 89************************987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1642.48
//
Query:       KIR61788.1  [L=420]
Description: UDP-N-acetyl-D-glucosamine dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-36  125.9   0.0    2.5e-36  125.0   0.0    1.4  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
    1.1e-26   92.8   0.0      2e-26   92.0   0.0    1.4  1  UDPG_MGDP_dh    UDP-glucose/GDP-mannose dehydrogenase family,
    1.4e-21   76.9   0.0    5.7e-21   74.9   0.0    2.0  2  UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family,
    0.00012   22.3   0.0    0.00035   20.8   0.0    1.8  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    0.00025   20.5   0.2       0.23   10.8   0.1    2.4  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
     0.0016   17.8   0.0     0.0027   17.0   0.0    1.4  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
     0.0065   16.7   0.6       0.71   10.1   0.0    2.7  3  TrkA_N          TrkA-N domain
       0.01   15.8   0.0      0.016   15.1   0.0    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
  ------ inclusion threshold ------
      0.029   14.9   0.9         10    6.7   0.0    2.7  3  XdhC_C          XdhC Rossmann domain
      0.043   14.4   0.1        1.4    9.5   0.1    2.7  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
       0.13   11.4   0.3       0.27   10.4   0.1    1.6  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   0.0   1.6e-39   2.5e-36       2     181 ..       5     181 ..       4     188 .. 0.96

  Alignments for each domain:
  == domain 1  score: 125.0 bits;  conditional E-value: 1.6e-39
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-----B-TTTTCB- CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDideekvdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaVgTPskkkgkaaD 96 
                     k++viG GYvGl+ a+   e+g++v+g+D+++ +v+ l sg++ +++   ++l ++   sgr++ +t++   +e  d+++i+V+TP ++    +D
      KIR61788.1   5 KLVVIGQGYVGLPLAMRAVEAGMDVVGLDVNADRVKRLASGESFVEDIPADRLGRALG-SGRYRPSTEYAD-AEGFDICVITVPTPLRD--GVPD 95 
                     689***********************************************99999888.9*********99.9**************99..788* PP

                     THHHHHHHHHHHHHHHCEEEEEE-S---TTHHHHCHHHHHHHHCSS-.TTCEEEEE------TTSHHHHHHS-S-EEEEESSCHHH CS
  UDPG_MGDP_dh_N  97 lkyvesaarsiaealkkgkvvvvkSTvpvgtaeelvkkileeaskkk.gvdfdvvsnPEflregsavkdllnpdrvviGveekkae 181
                     l+yve+a   i+++l+ g+ v+++ST+++gt+eel++++le+as  +   df++ ++PE++++g+ v  l n ++vv Gv+  + e
      KIR61788.1  96 LSYVEQAGGGIGPYLRPGCAVILESTTYPGTTEELLRPLLESASGLTaPGDFHLGYSPERIDPGNPVWKLENTPKVVSGVDAASRE 181
                     ********************************************998889******************************988776 PP

>> UDPG_MGDP_dh  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   1.2e-29     2e-26       2      93 ..     202     293 ..     201     294 .. 0.95

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 1.2e-29
  UDPG_MGDP_dh   2 tAEliKlaaNaflatkIsfiNelanlcealgidveeVieavgldprigpkflkpglGvGGsclpkDvkaLvalaee.lgleaelleavrevNe 93 
                    AEl+Kl++N+f++++I++iNel +l ++l+idv++ iea++++p+ g++ ++pg+GvGG+clp D+ +L +++++ lg +++++e + +vN+
    KIR61788.1 202 VAELTKLIENTFRQVNIALINELTMLSHHLDIDVWQAIEAAETKPF-GFMPFRPGPGVGGHCLPIDPCYLSWQVKRrLGRQFRFIELANDVNH 293
                   7********************************************9.8************************876549**************6 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.9   4.8e+03      31      75 ..      27      86 ..      18      88 .. 0.53
   2 !   74.9   0.0   3.5e-24   5.7e-21       2     102 ..     321     411 ..     320     414 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.9
                    SEEEEE-SSTHHCCCCHHGG...............BTCCEE.ES-CHHHHTT-SEEEE-S- CS
  UDPG_MGDP_dh_C 31 aevkiyDPkvkeeaveaele...............ekgvev.vdsleealkgadaivilte 75
                    ++v+  D ++++ ++ a++e                 + ++  ++ +  ++g+d++vi+++
      KIR61788.1 27 MDVVGLDVNADRVKRLASGEsfvedipadrlgralG-SGRYrPSTEYADAEGFDICVITVP 86
                    555555555555555544445555555555555531.222202333667788888888775 PP

  == domain 2  score: 74.9 bits;  conditional E-value: 3.5e-24
                     EE-SSSSTT-S--TT-HHHHHHHHHHHCTSEEEEE-SSTHHCCCCHHGGBTCCEEES-CHHHHTT-SEEEE-S--GGGGGS-HHHHHHCC..SS- CS
  UDPG_MGDP_dh_C   2 ilGlafKkdtdDlReSpaldiieeLleegaevkiyDPkvkeeaveaeleekgvevvdsleealkgadaiviltehdefkeldlaklkelm..kpa 94 
                     +lGla+K++t+D+R+Spa+d++++L++ gaev++++P++++ +        gv+vv   e++l++ada+v++t+hd +++       +l+  +++
      KIR61788.1 321 LLGLAYKPNTGDMRDSPAVDVARRLQDLGAEVRAVEPYAEPHHLPG-----GVVVVGLTERELREADAVVVVTDHDCLDY-------DLVvrHAR 403
                     89***************************************99876.....89999878*********************.......44457899 PP

                     EEEESSS- CS
  UDPG_MGDP_dh_C  95 vvfDgrnv 102
                     +vfD+rn 
      KIR61788.1 404 YVFDTRNR 411
                     ******95 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.1e-07   0.00035       2     102 ..       6     132 ..       5     141 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.1e-07
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT...................EEE-SSHHHHHHHC...SEEEE-SS....SHHHHHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg...................akaaesieelvasl...dvvitmvk....agkavde 71 
                    + +iG G  G ++a + ++ag++v++ ++++++v++l++ +                    ++ ++ +    ++   d+ ++ v+    +g +  +
     KIR61788.1   6 LVVIGQGYVGLPLAMRAVEAGMDVVGLDVNADRVKRLASGEsfvedipadrlgralgsgrYRPSTEYA----DAegfDICVITVPtplrDGVPDLS 97 
                    569***********************************998888888999988888654422222222....223446665555411114444455 PP

                    HHHS....HCCC--TT-EEEE-S---HHHHHHHHH CS
  NAD_binding_2  72 vieg....llealkkgdilidgstsspedtrelak 102
                     +e+    + ++l++g  +i  st+ p +t+el +
     KIR61788.1  98 YVEQagggIGPYLRPGCAVILESTTYPGTTEELLR 132
                    5555677799999***********99999999865 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00014      0.23      36      73 ..       3      40 ..       1      52 [. 0.85
   2 !    7.2   0.0    0.0018       2.9      50      99 ..     340     388 ..     338     398 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00014
                  TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C 36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkee 73
                   +++ +iG G +G  +a r+ + gm+v++ d++ ++ +
    KIR61788.1  3 AEKLVVIGQGYVGLPLAMRAVEAGMDVVGLDVNADRVK 40
                  67899**************************9987655 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0018
                   HHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHH.HHHH-SEEEE-S CS
  2-Hacid_dh_C  50 avakrlkafgmkviaydrskkkeeeeeelgvelvslee.llaesDivslhl 99 
                    va+rl+ +g++v a++++ ++ +     gv +v l e  l+e+D v++++
    KIR61788.1 340 DVARRLQDLGAEVRAVEPYAEPHH--LPGGVVVVGLTErELREADAVVVVT 388
                   69*****************99777..4556667766541699999999876 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.7e-06    0.0027      29      69 ..       4      44 ..       1      88 [. 0.86

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.7e-06
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDvrparleqles 69
                  k +viG G +Gl  +  a++ g +V+ lDv+++r ++l s
   KIR61788.1  4 EKLVVIGQGYVGLPLAMRAVEAGMDVVGLDVNADRVKRLAS 44
                 589*********************************99987 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00044      0.71       2      39 ..       7      44 ..       6      56 .. 0.90
   2 ?   -3.4   0.0       6.9   1.1e+04      32      53 ..     181     203 ..     165     221 .. 0.55
   3 ?    4.1   0.0     0.033        54      55      74 ..     373     393 ..     371     411 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00044
                EEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH CS
      TrkA_N  2 iiiGlGrvGrslaeeLseggkdvvvidkdeerveelre 39
                ++iG G vG  la +  e+g+dvv+ d + +rv++l+ 
  KIR61788.1  7 VVIGQGYVGLPLAMRAVEAGMDVVGLDVNADRVKRLAS 44
                8*****************8879*************975 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.9
                 HHHHHHHHTTSE.EEES-TTSHH CS
      TrkA_N  32 erveelreegle.vvvgdatdee 53 
                 erv+ + ++ +e +v  d t+ +
  KIR61788.1 181 ERVDAFYRRLVErTVPVDSTRVA 203
                 44555555554445555555554 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.033
                 HHHTTGGGESEEEE-SSSH.H CS
      TrkA_N  55 Leeagiekadaviaatgdd.e 74 
                 L e ++ +adav+++t++d  
  KIR61788.1 373 LTERELREADAVVVVTDHDcL 393
                 6677899**********9953 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     1e-05     0.016       2      39 ..       6      43 ..       5      85 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekal 39
                + viG G +G  +a+ +++ag++Vv +d++++++++ +
  KIR61788.1  6 LVVIGQGYVGLPLAMRAVEAGMDVVGLDVNADRVKRLA 43
                67******************************999864 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0062        10       1      32 [.       6      37 ..       6      92 .. 0.81
   2 ?   -2.5   0.0       4.2   6.9e+03      76      95 ..     178     197 ..     177     207 .. 0.74
   3 ?    5.9   0.1      0.01        17      11      62 ..     339     399 ..     335     406 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0062
                EEEE--STTHHHHHHHHHHHTEEEEEEES-GG CS
      XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpree 32
                lv++G+g v+ +la  a ++g++v+ +d +++
  KIR61788.1  6 LVVIGQGYVGLPLAMRAVEAGMDVVGLDVNAD 37
                79***********************9998885 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.2
                 S-HHHHHHHCTTS.--.... CS
      XdhC_C  76 GSrkkaarrlerlraaglse 95 
                 +Sr++ +++++rl ++ ++ 
  KIR61788.1 178 ASRERVDAFYRRLVERTVPV 197
                 6999999*****99987643 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.01
                 HHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE............-EEEE--S-HHHHHHHHH CS
      XdhC_C  11 qalarlaaalgfrvtvvdpreefatkerfpeade............tavvvlthdhklDaeale 62 
                   +ar ++ lg +v  v+p +e   ++++p+               +avvv+t +  lD++++ 
  KIR61788.1 339 VDVARRLQDLGAEVRAVEPYAE---PHHLPGGVVvvglterelreaDAVVVVTDHDCLDYDLVV 399
                 56899999*********99886...5555544335566666666669******99999998765 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00089       1.4       1      25 [.       5      29 ..       5      44 .. 0.85
   2 ?    1.5   0.0      0.27   4.4e+02      11      30 ..     338     357 ..     335     364 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00089
                EEEEECSSHHHHHHHHHHHHTTSEE CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkV 25
                k+vv+G Gy+gl lA  + e g +V
  KIR61788.1  5 KLVVIGQGYVGLPLAMRAVEAGMDV 29
                68*************9999999887 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.27
                 HHHHHHHHHHTTSEEEEEES CS
   Pyr_redox  11 glElAgalaelgkkVtvver 30 
                 ++++A  l++lg++V  ve 
  KIR61788.1 338 AVDVARRLQDLGAEVRAVEP 357
                 899************99985 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00016      0.27     143     173 ..       4      34 ..       1      53 [. 0.83
   2 ?   -2.7   0.0       1.6   2.6e+03      21      31 ..     347     359 ..     338     399 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00016
                  SEEEEES-SHHHHHHHHHHHHHT-EEEEEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalaklgkevtlvea 173
                  +++vv+G Gy+G+ lA+ + ++g +v+ ++ 
   KIR61788.1   4 EKLVVIGQGYVGLPLAMRAVEAGMDVVGLDV 34 
                  689*******************999875554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.6
                  HHTS-EEEEE..T CS
                  xxxxxxxxxx..x RF
  Pyr_redox_2  21 qagakvtlve..l 31 
                    ga+v  ve  +
   KIR61788.1 347 DLGAEVRAVEpyA 359
                  3444444443322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 2849.63
//
Query:       KIR61789.1  [L=465]
Description: serine/threonine protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-43  149.5   0.0    1.4e-43  149.2   0.0    1.0  1  Pkinase         Protein kinase domain
    5.9e-28   97.9   0.0    7.4e-28   97.5   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    5.8e-10   39.5   1.0    5.2e-05   23.3   0.1    2.5  2  APH             Phosphotransferase enzyme family
    0.00015   20.7   0.0    0.00021   20.2   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
    0.00021   20.9   0.0    0.00032   20.3   0.0    1.1  1  RIO1            RIO1 family
    0.00063   19.1   0.0      0.001   18.5   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0031   16.9   0.0     0.0057   16.0   0.0    1.5  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.011   14.8   0.0      0.015   14.3   0.0    1.1  1  Haspin_kinase   Haspin like kinase domain
      0.047   12.7   0.0      0.069   12.2   0.0    1.1  1  Seadorna_VP7    Seadornavirus VP7
       0.28   10.8   0.0       0.41   10.2   0.0    1.2  1  FTA2            Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.2   0.0   7.6e-47   1.4e-43       4     259 ..      15     266 ..      12     270 .. 0.91

  Alignments for each domain:
  == domain 1  score: 149.2 bits;  conditional E-value: 7.6e-47
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHHHHSS-- CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfee.....kdelylvleyveggeladllerkgsls 96 
                 + ++ +G++G V +a+++  g+ vAvK++     ++ +   ++++E +i++ l+hp iv++y++ e+      +  ylv+e+veg+ l +++e+ g+l 
  KIR61789.1  15 DDRVATGGMGDVWRATDQVLGRRVAVKVLLPALVSDPDFiARFRAEARIMAALRHPGIVQVYDCGEDdlptgGRADYLVMEFVEGEPLSKRIEAAGHLG 113
                 667779***********************999888877679**************************999998899*********************** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHS CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltg 193
                  +e+ +i++q +++l+  H+ gi+HrD+Kp+N+L++e+g + ++DFG+a+  + +s   ++ + gt  Y+APE   ++++s ++D+++lG + y+ ltg
  KIR61789.1 114 VAETMSIVAQAAQALHAAHAGGIVHRDVKPSNLLVQEDGTVVLVDFGVARSTNVTSItsTNAVPGTALYMAPEQAAGRPVSGATDIYALGAVAYCCLTG 212
                 *************************************************998877656699999*********************************** PP

                 S-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase 194 kppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeell 259
                  ppf g++  +     +++           +e  + +++i+  ++dl+++ l+kdp  R+    ++
  KIR61789.1 213 GPPFTGDNPLQ---VAVRH---------LDDEPPELPTDIPGPVRDLVSRALAKDPAARYATGAAM 266
                 *****555555...44444.........23467888999********************9866555 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   4.1e-31   7.4e-28       3     250 ..      14     260 ..      12     267 .. 0.91

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 4.1e-31
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTT..SSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSS.....EEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkee..ateeekeelleeakimkklkhpnivkllgvctkeep.....llivteyvkgGdLlkfLr 93 
                  l+++++ G  G+V+++t +        +VavK+l     ++ +  +++  ea+im +l+hp iv+++ +  ++ p      ++v+e+v+g  L+k ++
   KIR61789.1  14 LDDRVATGGMGDVWRATDQ----VLGRRVAVKVLLPAlvSDPDFIARFRAEARIMAALRHPGIVQVYDCGEDDLPtggraDYLVMEFVEGEPLSKRIE 107
                  5677889999999999988....77889999999654114444599**********************9995444444459***************** PP

                  HTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHH CS
  Pkinase_Tyr  94 kkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsf 191
                  +    +l + +++s+++q A++++  ++  +vHrd+   N L++e+ +v + DfG+ar++ +  + ++++       +mapE    + ++ ++D+++ 
   KIR61789.1 108 AA--GHLGVAETMSIVAQAAQALHAAHAGGIVHRDVKPSNLLVQEDGTVVLVDFGVARST-NVTSITSTNAVPGTALYMAPEQAAGRPVSGATDIYAL 202
                  98..9******************************************************9.77788889999999*********************** PP

                  HHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS- CS
  Pkinase_Tyr 192 GvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRp 250
                  G + +  +t g  p++g ++ +v+ +  +++  e p+++p  + +l+++ +++dp+ R 
   KIR61789.1 203 GAVAYCCLT-GGPPFTGDNPLQVAVRHLDDEPPELPTDIPGPVRDLVSRALAKDPAARY 260
                  *****9999.99************9999***************************9995 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.3   9.1e-07    0.0016      13     107 ..      26     133 ..      17     134 .. 0.75
   2 !   23.3   0.1   2.9e-08   5.2e-05     153     197 ..     121     163 ..     108     168 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 9.1e-07
                 EEEEEETT.-.-EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTE..EEEEEE----EE-SS......HHHHHHHHHHHHHH CS
         APH  13 tylvttpa.g.ryvlrrnppa..raaeeirrevallrlLakagv.pvPevlagdtddeeigl..lfalieyvpgrsllr......klsaaqlpelleal 98 
                 +++ t+   g r+++++  pa    + +i+r+ a+ r +a++    + +v+++++dd   g    ++++e+v+g++l+       +l  a++  +++++
  KIR61789.1  26 VWRATDQVlGrRVAVKVLLPAlvSDPDFIARFRAEARIMAALRHpGIVQVYDCGEDDLPTGGraDYLVMEFVEGEPLSKrieaagHLGVAETMSIVAQA 124
                 7777777785599999999998877777777777666666665533569999765554444467***************99999999999999999999 PP

                 HHHHCCHHC CS
         APH  99 geflaalhq 107
                 +++l a h+
  KIR61789.1 125 AQALHAAHA 133
                 999988885 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 2.9e-08
                 HHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 153 laalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                  a+ a+ l+++ + +++H+D +p Nllv++d++ v  ++Df+ a+
  KIR61789.1 121 VAQAAQALHAAHAGGIVHRDVKPSNLLVQEDGTVV--LVDFGVAR 163
                 45666777778999***************999999..****9886 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.1e-07   0.00021     292     383 ..      99     185 ..      60     192 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.1e-07
  Pkinase_fungal 292 ispvGkpiekaesp..kellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmai 383
                      +p  k ie a++    e ++ +++a +++   +  +gi+HrD+   N+l+      ++ + +L+D+ +a +++  +s  + +   GT+ +ma 
      KIR61789.1  99 GEPLSKRIEAAGHLgvAETMSIVAQAAQALHAAH-AGGIVHRDVKPSNLLVQ-----EDGTVVLVDFGVARSTNV-TSITSTNAVPGTALYMAP 185
                     567777777777652268999*************.****************9.....7899*************7.555556899*******95 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.8e-07   0.00032      79     150 ..      88     160 ..      82     169 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.8e-07
                 ETTEEEEE--EETTEEGGBHHHCG.-..HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1  79 krhvlvmefigedgvaapklkdve.e..eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvs 150
                 + + lvmef++  g ++ k  ++  +   +e+ +++++  ++++++    g+vH D+   N+lv+ed  vv++D++
  KIR61789.1  88 RADYLVMEFVE--GEPLSKRIEAAgHlgVAETMSIVAQAAQALHAAH-AGGIVHRDVKPSNLLVQEDgTVVLVDFG 160
                 5678*******..8887765555545577888889999999887777.99*****************99*****97 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.6e-07     0.001      57     169 ..      56     162 ..      51     170 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 5.6e-07
         Kdo  57 ravrEfrllkrLeeagvavpkpvaagavkvgle.yrAl.llterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqq 153
                 r+++E r++ +L++ g+      + + + + +   rA+ l++e +eg + L + ++   +l+++ +  ++ + +++ +  h+ g+ H+d+ + n+l+q+
  KIR61789.1  56 RFRAEARIMAALRHPGIVQV---YDCGEDDLPTgGRADyLVMEFVEG-EPLSKRIEAAGHLGVAETMSIVAQAAQALHAAHAGGIVHRDVKPSNLLVQE 150
                 77888888888888887543...333333333334554277777776.678888887666999999999****************************** PP

         Kdo 154 eeeeeaeiwliDldka 169
                 ++    +++l+D+  a
  KIR61789.1 151 DG----TVVLVDFGVA 162
                 *9....******9655 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.2e-06    0.0057     143     256 ..     114     222 ..      96     259 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.2e-06
  Kinase-like 143 tiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve....kgfaPpEllgsrggytrknktkmthkldaWql 236
                   +    + +q+ +     +a g+vh ++++ nll +e+g ++l +f+  +        s+++    + +  pE  +            ++ ++d ++l
   KIR61789.1 114 VAETMSIVAQAAQALHAAHAGGIVHRDVKPSNLLVQEDGTVVLVDFGVARSTNVTSITSTNAvpgtALYMAPEQAA---------GRPVSGATDIYAL 202
                  555555555555555556788*************************965544433333333333444445555444.........4467899999999 PP

  Kinase-like 237 GlviyriwclklPltlatee 256
                  G+v+y       P+t + ++
   KIR61789.1 203 GAVAYCCLTGGPPFTGDNPL 222
                  99999988888899888876 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   8.4e-06     0.015     188     258 ..      92     166 ..      75     181 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.4e-06
  Haspin_kinase 188 lllkd.kGtdLeev....klkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRles 258
                    l++++ +G++L++         +++ +si  q ++ L++a +     HRd +  n Lv++ ++v l+d+ ++R ++
     KIR61789.1  92 LVMEFvEGEPLSKRieaaGHLGVAETMSIVAQAAQALHAAHAG-GIVHRDVKPSNLLVQEDGTVVLVDFGVARSTN 166
                    5555436888877654334456889999999999999998765.889**************************973 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.8e-05     0.069     143     197 ..     117     169 ..     111     175 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.8e-05
  Seadorna_VP7 143 tvniivaglkdLmdfhsestnllhGDcnpenlmcDknGylklvDPvsLlertvvy 197
                   t+ i+    ++L+  h   ++++h D++p+nl+  + G + lvD +   + +v+ 
    KIR61789.1 117 TMSIVAQAAQALHAAH--AGGIVHRDVKPSNLLVQEDGTVVLVDFGVARSTNVTS 169
                   5666666777888888..789***********************88777766665 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00023      0.41     174     213 ..     117     161 ..     113     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00023
        FTA2 174 evsqlpkllrdlkklhklgIvvrDlkeenyi...dg..kLvDlsa 213
                 ++s++ +  + l+ +h+ gIv+rD+k++n++   dg  +LvD++ 
  KIR61789.1 117 TMSIVAQAAQALHAAHAGGIVHRDVKPSNLLvqeDGtvVLVDFGV 161
                 578899999********************9855534335777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3037.34
//
Query:       KIR61790.1  [L=209]
Description: RNA polymerase subunit sigma-70 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-14   51.7   0.7    5.6e-14   51.7   0.7    1.7  2  Sigma70_r2    Sigma-70 region 2
    2.7e-09   36.6   0.4    2.7e-09   36.6   0.4    1.7  2  Sigma70_r4_2  Sigma-70, region 4
    0.00015   21.2   0.4    0.00015   21.2   0.4    2.0  2  Sigma70_r4    Sigma-70, region 4
  ------ inclusion threshold ------
       0.17   11.8   1.1       0.74    9.7   1.1    2.0  1  Sigma70_ECF   ECF sigma factor


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.7   1.3e-17   5.6e-14       1      71 []      23      88 ..      23      88 .. 0.95
   2 ?   -2.0   0.0      0.73   3.3e+03      31      47 ..     167     183 ..     150     187 .. 0.63

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 1.3e-17
                HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST. CS
  Sigma70_r2  1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrrr 71
                l++ ++p ++r++  l+g  adaeD+++e++l + r +++f+   g +f+aw ++iarn+a d+lR++rrr
  KIR61790.1 23 LYRTLQPGLLRYLTALVG--ADAEDVASETWLQISRDLPTFT--GG-EFRAWTVTIARNRAMDHLRRQRRR 88
                79999************9..69********************..66.7********************985 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.73
                 HHHHHHHGGGTSTTTCH CS
  Sigma70_r2  31 flrlwraverfdpergv 47 
                 + rl   ++r dp+ + 
  KIR61790.1 167 LRRLATLLQRQDPTSEA 183
                 44555556666666655 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2         2   8.8e+03       6      16 ..      77      87 ..      77      88 .. 0.76
   2 !   36.6   0.4   5.9e-13   2.7e-09       2      54 .]     118     170 ..     117     170 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2
                  HHHTTS-HHHH CS
  Sigma70_r4_2  6 ealaeLperqr 16
                  +a+++L  ++r
    KIR61790.1 77 RAMDHLRRQRR 87
                  57888888887 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 5.9e-13
                   HHHHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   2 qalrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   +a ++++a+Lp+r+ e++llr++ gl+ + + ++lg   g+V+++ +R++++L
    KIR61790.1 118 EAALALIATLPPREAEAVLLRAVIGLDAESAGRVLGRRAGAVRTAAHRGLRRL 170
                   57789**********************************************98 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2      0.57   2.6e+03      42      50 .]      76      84 ..      74      84 .. 0.85
   2 !   21.2   0.4   3.4e-08   0.00015       2      48 ..     124     170 ..     123     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.57
                HHHHHHHHH CS
  Sigma70_r4 42 krAlrkLRk 50
                +rA+++LR+
  KIR61790.1 76 NRAMDHLRR 84
                59*****95 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 3.4e-08
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 +a+Lp+re e + lr + gl  e  g++lg   ++Vr   +r+lr+L
  KIR61790.1 124 IATLPPREAEAVLLRAVIGLDAESAGRVLGRRAGAVRTAAHRGLRRL 170
                 89********************************************9 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.1   0.00016      0.74      73     165 ..      64     156 ..       2     171 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00016
  Sigma70_ECF  73 dhlfalaaeamrrilidhaRrrkrqkRGG..dvvraeldeeedsvdsdspdelleLdealerllsldpeqarlvelrkleGlsveEiAeklgvsk 165
                  +++ a  +++ r   +dh+Rr++r+       + +a+l+ ++d+  ++ + e l  + al  ++ l+p+ a+ v lr + Gl  e ++ +lg  +
   KIR61790.1  64 GEFRAWTVTIARNRAMDHLRRQRRRPSLPvpVQALADLAGDADT--AERAGETLGTEAALALIATLPPREAEAVLLRAVIGLDAESAGRVLGRRA 156
                  456677889999999*****988765433103334444444444..5778899999999999999******************999999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1581.00
//
Query:       KIR61791.1  [L=411]
Description: glutamate--cysteine ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-50  171.6   0.4      4e-50  170.8   0.4    1.4  1  GCS2      Glutamate-cysteine ligase family 2(GCS2)


Domain annotation for each model (and alignments):
>> GCS2  Glutamate-cysteine ligase family 2(GCS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.8   0.4   2.2e-54     4e-50       2     277 ..      37     336 ..      36     351 .. 0.89

  Alignments for each domain:
  == domain 1  score: 170.8 bits;  conditional E-value: 2.2e-54
                 EEEEEEEEEETTTTEE-S-HHHHHCCCTTT-S..............SSEEEE-SSTTEEEEE--SBSSHHHHHHHHHHHHHHHHHHHHHTT-EEE--SB CS
        GCS2   2 gvEeeflvvdlatgdlrgwseiledeaiigls.............eggsvvkelpegqvElstapleslaeaaeeisadleelrsvadelGlellglGt 87 
                 gvE e+ v+d+a++ ++ +  +++ +a+   s             + gs v+++p+gq+E+stap  s+a++++++ ad++++  +++ +Gl+l   G 
  KIR61791.1  37 GVELEWTVHDAADPARP-VDRERLRAALGPHSpttihdsspaaplRHGSTVTVEPGGQLEISTAPRTSVAALVDATNADIAQVTDLLRAAGLALGRTGI 134
                 899*******9999988.44444444443333334444467777889**************************************************** PP

                 -SS---------------THHHHHGG..G.G-S--B-EEEEEEE-SSHHHHH..HHHHHHHTTHHHHHHHH--B-EETTEE-S-SB-GGGCCTTSTT-C CS
        GCS2  88 hPfalrsedevtpkaryrrmleymdrvGvlgrqmmvaglhvqvnidssseed.VevlrlvrallPvllAlsAnSPfleGrdtgyaStRariftqtpqag 185
                 +P   r++++v++ +ry +m   +dr G+ gr mm++++  qv++d+++  + ++++  ++a +P llA +A      Gr+tg+aS+R + + ++++a 
  KIR61791.1 135 DP--WRPPRPVVDTPRYHAMRCVFDRRGPAGRTMMYSTAGLQVCLDAGEPDQvAARWAAAHAVGPPLLAAFATADRHAGRRTGWASARMAAWLAIDPAR 231
                 **..67889***************************************9988899******************************************87 PP

                 S----SSHHH....HHHHHHHHTTSTT-SSGG.............G--BSEEEETTTT.EEEEEEEE--...SSHHHHHHHHHHHHHHHHHHHHH---- CS
        GCS2 186 elplafedga...aferyaryaldvpvidvrr............frlwldirpsslpgttlelrihdttlfPevrlrallearlldaqpadrldalpaa 269
                   p  + +++   +  ++++yal +p ++ r+            f +w+ + ++ +p+tt +l++h++tlfP+vr+r +le+r+ldaqp+++ + lp a
  KIR61791.1 232 TRPVWSPQQPdadPVAAWTAYALAAPLLCLRDdaadwtpppgvtFGDWITGALP-RPPTTDDLDYHLSTLFPVVRPRGYLEIRYLDAQPGPD-WRLPLA 328
                 7777776554111689*************999**********************.9999******************************665.999999 PP

                 --GGGGTT CS
        GCS2 270 vlvalldd 277
                 vl+all+d
  KIR61791.1 329 VLAALLAD 336
                 99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3093.69
//
Query:       KIR61792.1  [L=443]
Description: sulfatase-modifying factor 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-64  217.2   7.7    3.7e-64  216.8   7.7    1.1  1  FGE-sulfatase  Sulfatase-modifying factor enzyme 1
    2.3e-27   96.0   1.6    2.3e-27   96.0   1.6    2.3  2  DinB_2         DinB superfamily
     0.0079   16.6   0.2     0.0079   16.6   0.2    1.9  2  DUF664         Protein of unknown function (DUF664)


Domain annotation for each model (and alignments):
>> FGE-sulfatase  Sulfatase-modifying factor enzyme 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.8   7.7   6.2e-68   3.7e-64       2     260 .]     175     434 ..     174     434 .. 0.94

  Alignments for each domain:
  == domain 1  score: 216.8 bits;  conditional E-value: 6.2e-68
                    STTEEEE-SEEEEES-.TSTTGGCCC-S-EEEEES-EEEESS--BHHHHHHHHHHH....H................SSETTEEEEETSCTTBCCT CS
  FGE-sulfatase   2 apemvlipgGsfemGs.eektandeeapahevtvraFaidkteVTnaqyaafveatgyete................aasqwwaeveganvrhpeg 80 
                    ++++vl+p+G+f+mG+ ++++a d+e+pah v+++a+ id  +VTn+ y++f+++ gy++                 +a+  w++  + +  ++ g
     KIR61792.1 175 VADEVLVPAGEFTMGTsTDPWALDNERPAHPVRLPAYVIDAAPVTNGRYREFIADGGYDDPrwwseagwahrteaglTAPMHWRRDGDGWAYQRFG 270
                    6799************99*****************************************99**********9999998888888887777777777 PP

                    TC-SSTT-TTSB--S--HHHHHHHHHHHCHHHTS-EE---HHHHHHHHHTT-...SSSSCTTBSTTSCCGB...SSTTTTB--TTCGGS-SS.--- CS
  FGE-sulfatase  81 rksdikkradhPvvhVsweDavaYArwlgkktgegyrLPteaEweyAArggk...kgreypwgdelkpakniwqGslakfekeaaaadsqngrtsp 173
                    r      r+d+PvvhV+w++a+aYA+w+gk      rLPteaEwe+AAr++    ++r+ypwgd +              ++e+a+ ++++  ++p
     KIR61792.1 271 R--WSPVRDDEPVVHVCWYEAQAYAAWAGK------RLPTEAEWEKAARWDPatgRSRRYPWGDGEP-------------TAEHANLGQRHLWPAP 345
                    4..35789**********************......**************9999999*******955.............89999999******** PP

                    TT-S-B..-TTS-B-TTCSSEEEEEEE--...THCCH-SSCS----SS-SSEEEEC--TTS.TTGGCTSTT-E.EEE-TT--BTTEEE--EE CS
  FGE-sulfatase 174 vgsfpp..nalGlyDmaGNvwEWtsdwyk...kyalapaeelsqeaekgelrvvkGgswlkaelssllraafrasaetpdtaasdvGfRlvr 260
                    vg++p+  ++lG+++++G+vwEWts+ ++   ++a+ p++e+s+ +++ ++rv++Ggs+ ++  +  +r +fr +++ p +++++ GfR++r
     KIR61792.1 346 VGAYPAgaSPLGVHQLIGDVWEWTSSPFRgypGFAAFPYREYSEVFFGDDHRVLRGGSFGTD--RAACRGTFR-NWDYPIRRQIFSGFRCAR 434
                    ******99*********************9999999*************************9..8********.****************97 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   1.6   3.9e-31   2.3e-27       1     128 []      19     150 ..      19     150 .. 0.88
   2 ?   -0.1   1.0       0.2   1.2e+03      37      57 ..     282     311 ..     242     344 .. 0.73

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 3.9e-31
      DinB_2   1 qlerararllalledlteeelnrqpspgkwsiawllaHlgnveelllerlr.geeaprpgldpltp..............psaaealaylaevrarlla 84 
                 +ler+rar+  l++++++++l rq+sp +++++w+laH+gn+eel+l r   g+e++r+  d+l++              +++aea+ayla vr+ +++
  KIR61792.1  19 ELERTRARTAGLTAAVDDADLMRQHSPIMSPLVWDLAHVGNQEELWLVRDVgGREPVRRDIDDLYDafkqprrdrpalplLPPAEARAYLATVRDKVHD 117
                 59*********************************************9988455555666666666666666666666679****************** PP

      DinB_2  85 llealtdadldrpltaphpglgkltlgdvllfvlqHeqhHleqi 128
                 ll++ +    drpl a          g+++++++qHeq+H+e++
  KIR61792.1 118 LLDRVPF--TDRPLVAD---------GFAFGMIVQHEQQHDETM 150
                 ****999..68888888.........****************98 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.2
      DinB_2  37 aHlgnveelllerlrgeeap.........r 57 
                  H+ ++e  + +++ g++ p         r
  KIR61792.1 282 VHVCWYEAQAYAAWAGKRLPteaewekaaR 311
                 699999999999999988884444333220 PP

>> DUF664  Protein of unknown function (DUF664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   1.3e-06    0.0079       5     101 ..      19     120 ..      15     132 .. 0.86
   2 ?   -3.6   1.5       2.2   1.3e+04      49      93 ..     242     291 ..     237     322 .. 0.43

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHHHHHHTT--GGGTT--BTTB-S-HHHHHHHHHHHHHHHHHHHTT-S---TTTSHH.....TTTSSS---SS---HHHHHHHHHHHHHHHHH CS
      DUF664   5 fLdrqretllakleGLsdeqarrravpsstsllgLvkHvaevErgwfrrvlggeeevpldrsa.....adpdadfelaedetladllaeyrravarada 98 
                  L+r r++ +  ++ ++d+++ r+  p  + l + ++Hv + E+ w+ r +gg+e+v++d ++     ++p +d  + +   +a++ a  + ++++ ++
  KIR61792.1  19 ELERTRARTAGLTAAVDDADLMRQHSPIMSPLVWDLAHVGNQEELWLVRDVGGREPVRRDIDDlydafKQPRRDRPALPLLPPAEARAYLATVRDKVHD 117
                 599999*******************99999****************************99998888888888888888888888888888877777777 PP

                 HHT CS
      DUF664  99 vva 101
                 +++
  KIR61792.1 118 LLD 120
                 666 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.2
                 HHHHHHTT-S---TTTSHH.....TTTSSS---SS---HHHHHHHHHHHH CS
      DUF664  49 gwfrrvlggeeevpldrsa.....adpdadfelaedetladllaeyrrav 93 
                 gw +r+ +g  ++  +r++      ++ ++++  +d+++   +  y++++
  KIR61792.1 242 GWAHRTEAGLTAPMHWRRDgdgwaYQRFGRWSPVRDDEPVVHVCWYEAQA 291
                 55555555555554444444433222223333333333333334444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3133.88
//
Query:       KIR61793.1  [L=249]
Description: glutamine amidotransferase class-II [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-17   62.2   0.4    1.1e-16   61.2   0.4    1.4  2  GATase_6  Glutamine amidotransferase domain
      3e-10   39.4   0.0    3.4e-08   32.7   0.0    2.3  2  GATase_4  Glutamine amidotransferases class-II


Domain annotation for each model (and alignments):
>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.4   1.2e-20   1.1e-16       5     134 .]      75     217 ..      72     217 .. 0.76
   2 ?   -0.5   0.0      0.14   1.3e+03     103     132 ..     207     236 ..     191     237 .. 0.76

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 1.2e-20
    GATase_6   5 glaslvedevalaHvRlaivglaeeega.qPfpsedgrlllvhNGeiynyk....elreelpalkglafrsrsDtevllall...eelGeevlerlrG. 94 
                 gla +++++++la+vR+a+vg+++ ++a +Pf  ++g +l++hNG ++ ++    +l+ +lp  + l++ + +D+++l+al+    ++Ge+ +++++  
  KIR61793.1  75 GLAAATTSGAVLAAVRSATVGMPVLDTAvAPF--AEGPWLFSHNGVVRGWPdavaALAGRLPVRDLLTLDAPTDSALLWALVrhrLRAGEDPAAAVAAt 171
                 6788999*************************..*****************999999999999999**************9988767786666555552 PP

    GATase_6  95 mfafaiwdk.rentlila..rdrl.....gvkplyyavdesglafase 134
                 ++++a++   ++ +l l+  r  +     + + l+ ++  ++++ ase
  KIR61793.1 172 VAEVAAAAPrSRLNLLLTdgR--TvvataAGHALSLRQAPGAVLLASE 217
                 333333333233333333122..2345544677777777777777776 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.14
    GATase_6 103 krentlilardrlgvkplyyavdesglafa 132
                 ++++ + la + ++ +p ++av +++l++a
  KIR61793.1 207 QAPGAVLLASEPHDDDPGWQAVPDGRLVVA 236
                 377788899999999999999998888887 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   3.7e-12   3.4e-08      23     198 ..      34     209 ..      23     212 .. 0.73
   2 !    4.6   0.0    0.0014        13     223     250 ..     211     238 ..     206     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 3.7e-12
    GATase_4  23 aarggltdahadGwGiafye...gkaarvfkdpepsaesplaelvreypiksknvvaHiRkatqGevklenthpFvRelwgrewifAHnGdlkeykpkl 118
                   rgg     adG+G+++y+   g+ +r+        + +l  l  +    s  v+a +R at G   l+ +   v  +++  w+f HnG ++++ +++
  KIR61793.1  34 DMRGGG-TVNADGFGVGWYPpggGEPVRYRRGTPIWGDVTLPGLAAA--TTSGAVLAAVRSATVGMPVLDTA---VAPFAEGPWLFSHNGVVRGWPDAV 126
                 455665.5789*********988888888887777788888888766..79**************9777654...34457899**********988887 PP

    GATase_4 119 ..egrfePvGs.......TDsElafCelleelasrfekaepsaeeleralaelakeiaelGvfnlllsdgralfahastrLvyilRkaP 198
                        Pv +       TDs  a+ + l + + r  + e  a+++ +++ae+a+  a +  +nlll+dgr+++a a  +   + R+aP
  KIR61793.1 127 aaLAGRLPVRDlltldapTDS--ALLWALVRHRLR--AGEDPAAAVAATVAEVAAA-APRSRLNLLLTDGRTVVATAAGHALSL-RQAP 209
                 664456788754432222444..444444333333..3456788999999998876.56789*************999886666.7877 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0014
    GATase_4 223 vavvatepLtrdetWkklepGellvfrd 250
                 ++++a+ep  +d  W++++ G+l+v + 
  KIR61793.1 211 AVLLASEPHDDDPGWQAVPDGRLVVATT 238
                 5789*******************99754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1781.47
//
Query:       KIR61794.1  [L=321]
Description: histidyl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.8e-115  384.7   0.0   3.2e-115  384.5   0.0    1.0  1  Methyltransf_33  Histidine-specific methyltransferase, SAM-de
     0.0057   17.3   0.0      0.018   15.7   0.0    1.8  3  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_33  Histidine-specific methyltransferase, SAM-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  384.5   0.0  3.5e-119  3.2e-115       1     308 [.      19     319 ..      19     320 .. 0.98

  Alignments for each domain:
  == domain 1  score: 384.5 bits;  conditional E-value: 3.5e-119
  Methyltransf_33   1 laedvlagLsskpktlpskllYDarGselFeeitelpeYyptrtEiaiLqehaaeiaaaipaatlvelGsGsseKtrlLLealeaaekeltYvp 94 
                      l++dv+ gL+++pk+lp+k++YDarGselFeeit+lpeYyptr+E+++Lq++a eia++++a+tl+elGsGsseKtrlLL+a+++++   t+vp
       KIR61794.1  19 LRDDVRTGLTARPKWLPPKWFYDARGSELFEEITRLPEYYPTRAERSVLQRRAGEIAELTGAKTLIELGSGSSEKTRLLLDAFTRRGGLGTFVP 112
                      5899*******************************************************************************9999******* PP

  Methyltransf_33  95 lDvseeaLeealealaaeypsleveglvgdyedglewlaslpeaederrlvlflGssigNlepeeaaafLrklraalgpgdllLlGvDlvkdee 188
                      lDvs +aL+++++++a++yp+l+v+g+vgd++++   l++lp+   +rrlv+flG++igNl p+e+a fL+++ra+l+pgd+lL+G+Dlvkd++
       KIR61794.1 113 LDVSVSALRQSTAQIATDYPGLRVRGIVGDFTRH---LDRLPT--GGRRLVIFLGGTIGNLLPAERAGFLAAMRASLEPGDWLLIGTDLVKDPS 201
                      *******************************997...999996..89*********************************************** PP

  Methyltransf_33 189 kleaAYndsagvtaaFnlnllerinrelgadfdledfehvaewnaeegriemylrskrdqtvrvealdltvafkagekirteiSyKyteeevre 282
                      +++ AY+d+agvta+Fn+n+l+++nrelgadfd+e+f+hva w++e+++iem+lr++r+++ rv   dl+v+f+age++rte S+K+++e +++
       KIR61794.1 202 IVVPAYDDAAGVTAEFNRNVLRVVNRELGADFDPEAFAHVALWDPEREWIEMRLRAERPVRARVL--DLDVEFAAGEELRTEVSAKFRPEGIAA 293
                      **************************************************************987..588************************ PP

  Methyltransf_33 283 lleaaglevlkvWtdeksdfalyllq 308
                      +l aag+++++ Wtd+++ f+++l++
       KIR61794.1 294 ELVAAGFTAREFWTDADGLFGVTLAR 319
                      ***********************997 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     2e-06     0.018       3      96 ..      85     187 ..      83     187 .. 0.86
   2 ?   -2.2   0.0      0.78     7e+03      23      35 ..     240     252 ..     219     286 .. 0.57
   3 ?   -3.0   0.0       1.4   1.3e+04      22      41 ..     263     282 ..     250     309 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2e-06
                      EET-TTSHHHHHHHCTS....TSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBC.CGBS.SSTTTEEEEEEEST.GGGSSHHHHHHHHH CS
  Methyltransf_25   3 dlGcGtGrltlalakrl....gkakvtgvDiseemleaareraeeegl..nvefvqgda.edlp.fedgsfDlvvssga.lhhlsdedlekalk 87 
                      +lG G+ + t+ l++++    g ++++ +D+s ++l++  ++++ + +  +v+ ++gd+ ++l+ ++ g   lv+  g+ +  l +++++ +l+
       KIR61794.1  85 ELGSGSSEKTRLLLDAFtrrgGLGTFVPLDVSVSALRQSTAQIATDYPglRVRGIVGDFtRHLDrLPTGGRRLVIFLGGtIGNLLPAERAGFLA 178
                      899999999999999988764599**************999999865566*********545764689999999999999999888999***** PP

                      HHHHHEEEE CS
  Methyltransf_25  88 eiarvLkpg 96 
                       ++  L+pg
       KIR61794.1 179 AMRASLEPG 187
                      ******998 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.78
                      EEEEEESSHHHHH CS
  Methyltransf_25  23 kvtgvDiseemle 35 
                      +v   D+  e +e
       KIR61794.1 240 HVALWDPEREWIE 252
                      4444444444444 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.4
                      SEEEEEESSHHHHHHHHHHH CS
  Methyltransf_25  22 akvtgvDiseemleaarera 41 
                      a+v+ +D+  ++ e+ r+++
       KIR61794.1 263 ARVLDLDVEFAAGEELRTEV 282
                      44444555444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2318.83
//
Query:       KIR61795.1  [L=194]
Description: hypothetical protein TK50_30270 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-43  146.1  22.0    1.5e-21   76.5   5.2    2.2  2  UPF0016          Uncharacterized protein family UPF0016
     0.0018   18.3   6.0     0.0018   18.3   6.0    2.1  2  Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
  ------ inclusion threshold ------
      0.018   14.7  17.6       0.46   10.1   5.8    2.3  2  TauE             Sulfite exporter TauE/SafE
       0.05   13.2   7.5        1.4    8.5   0.1    2.4  2  DUF4131          Domain of unknown function (DUF4131)
       0.35   10.5   0.0       0.35   10.5   0.0    2.0  3  Tetraspanin      Tetraspanin family
        1.2    8.2  11.1        1.4    7.9   9.3    1.8  1  Acyl_transf_3    Acyltransferase family


Domain annotation for each model (and alignments):
>> UPF0016  Uncharacterized protein family UPF0016
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   8.9   9.2e-25   2.8e-21       3      75 .]      11      83 ..       9      83 .. 0.98
   2 !   76.5   5.2   4.9e-25   1.5e-21       5      75 .]     113     183 ..     109     183 .. 0.96

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 9.2e-25
     UPF0016  3 aflliflaElGDkTqlaaalLaarykplpVflGavlAlalmtvlsvllGsslakrlperlielvaavlFllfG 75
                +f++if+aElGDk+ql+a+++a+r+kp+pV++G+++A+a++++ sv++G  l+  lp+ +i l+a+++Fl fG
  KIR61795.1 11 SFGVIFVAELGDKSQLMALTFATRFKPIPVLVGITVATAVVHLASVAIGYGLGAALPTGWISLIAGLAFLGFG 83
                8***********************************************************************9 PP

  == domain 2  score: 76.5 bits;  conditional E-value: 4.9e-25
     UPF0016   5 lliflaElGDkTqlaaalLaarykplpVflGavlAlalmtvlsvllGsslakrlperlielvaavlFllfG 75 
                 +++flaElGDkT+la+++La++y +++ +lG++l+++++++l++l+G+ l+++lper+i++ aa+lF++ G
  KIR61795.1 113 VAFFLAELGDKTMLATITLATKYGWFGTWLGSTLGMVAADALAILVGRLLGRHLPERTIRYGAAILFAICG 183
                 789*****************************************************************987 PP

>> Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.4     0.052   1.6e+02      57     103 ..       5      51 ..       2      55 .. 0.59
   2 !   18.3   6.0   6.1e-07    0.0018      12     115 ..      47     164 ..      45     193 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.052
  Abhydrolase_9_N  57 avvalvvllvalvlaarwQrelralmgaeplgaaeyllvllvallvf 103
                      +v+++v + v++v+ +  + +l al  a + ++  +l+++ va++v+
       KIR61795.1   5 LVALAVSFGVIFVAELGDKSQLMALTFATRFKPIPVLVGITVATAVV 51 
                      45555555566666666666666666666666666666666666665 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 6.1e-07
  Abhydrolase_9_N  12 fqgvvsGlsaaiGYglGvllawlvrrllr.............lpepsrrvrrrlrlalavvalvvllvalvlaarwQrelralmgaeplgaaey 92 
                      +++vv  +s+aiGYglG++l + +  l++             +++++++ +r++++    ++++v ++++++ +  ++ l+++  a ++g+  +
       KIR61795.1  47 ATAVVHLASVAIGYGLGAALPTGWISLIAglaflgfgawtlrGDKLTEEEKRKAERGGKSAVVAVGVAFFLAELGDKTMLATITLATKYGWFGT 140
                      6899999******************9999*************999************************************************* PP

  Abhydrolase_9_N  93 llvllvallvf.alllllgrllra 115
                      +l+  ++++ + al +l+grll +
       KIR61795.1 141 WLGSTLGMVAAdALAILVGRLLGR 164
                      ******999883555777887754 PP

>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.8   0.00015      0.46      64     136 ..      43     114 ..       3     121 .. 0.66
   2 ?    7.7   7.2   0.00081       2.4     177     235 ..     128     185 ..     107     186 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00015
        TauE  64 rlllllllgsliGallGallllllpsellkllfgvlllllallmllrkkrsrakgrerrptaillvligglvG 136
                  +++  +++ l+ + +G  l ++lp+ +++l+ g++ l +++++l+  k  +++ ++++++   +++++++v+
  KIR61795.1  43 GITVATAVVHLASVAIGYGLGAALPTGWISLIAGLAFLGFGAWTLRGDKLTEEE-KRKAERGGKSAVVAVGVA 114
                 455556677778888899999999*********************966643333.222222222222222233 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00081
        TauE 177 slagalgyalagavdwpllll....llpgallGallGarlarrlsertlrrlfallllvlgvk 235
                 +++ a+ y ++g    +l       ++++ +l +l+G  l r+l+ert+r   a+l ++ g+ 
  KIR61795.1 128 TITLATKYGWFGT---WL--GstlgMVAADALAILVGRLLGRHLPERTIRYGAAILFAICGLW 185
                 2222223323333...22..122458999999************************9999986 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00047       1.4      14      69 ..      51     108 ..      36     123 .. 0.57
   2 ?    6.7   3.1    0.0017       5.2       2      51 ..     141     190 ..     138     193 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00047
     DUF4131  14 lllllllllllrrrprrrvll.llllllllallgfalrapqpnandlsqlles.gqev 69 
                 + l+ +++ + + +  ++ ++ l++ l++l+++ ++lr +  +++++ ++ +  +  v
  KIR61795.1  51 VHLASVAIGYGLGAALPTGWIsLIAGLAFLGFGAWTLRGDKLTEEEKRKAERGgKSAV 108
                 2223333333333445555550455677777777888888877777777766443333 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0017
     DUF4131   2 glplalvllalllllllllllllrrrprrrvllllllllllallgfalra 51 
                 +l++ l ++a+ +l++l+  ll r  p r++  ++++l+++++l++ l+a
  KIR61795.1 141 WLGSTLGMVAADALAILVGRLLGRHLPERTIRYGAAILFAICGLWLILEA 190
                 7888888999988888888888888********************98875 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.4       1.1   3.2e+03      35      35 ..      22      22 ..       4      58 .. 0.44
   2 ?   10.5   0.0   0.00012      0.35       9      62 ..      69     117 ..      66     121 .. 0.79
   3 ?   -3.2   0.4       1.8   5.4e+03      17      26 ..     177     186 ..     174     192 .. 0.50

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.1
                 . CS
                 x RF
  Tetraspanin 35 l 35
                 +
   KIR61795.1 22 D 22
                 1 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00012
                  XXXXXXXXXXXXXXXXXXXXXXX.....................XXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin   9 nllfwligivllavGvwlrlkhaeaalacllsesaedpailaillivvGvllfl 62 
                   ++ +++g+++l++G w+     +  ++ +++e+ ++++  + ++++vGv++fl
   KIR61795.1  69 GWISLIAGLAFLGFGAWT-----LRGDKLTEEEKRKAERGGKSAVVAVGVAFFL 117
                  58999*************.....4445556666677777777889999999987 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.8
                  XXXXXXXXXX CS
                  xxxxxxxxxx RF
  Tetraspanin  17 ivllavGvwl 26 
                  i++ ++G+wl
   KIR61795.1 177 ILFAICGLWL 186
                  3344444444 PP

>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   9.3   0.00046       1.4     137     296 ..       5     181 ..       4     182 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00046
                    xxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 137 Lwalfvlylllpll..........lrllrkvrkshlllllilllllslvfirhelfgpatsvgllplpsvlallfflfGalladaddrdrnlsrgl 222
                    L al v + ++++           l +++++++  +l+ +++++++++++  + ++g    +    ++   +l+f++fGa+  + d+      r  
     KIR61795.1   5 LVALAVSFGVIFVAelgdksqlmaLTFATRFKPIPVLVGITVATAVVHLASVAIGYGLGAALPTGWISLIAGLAFLGFGAWTLRGDKLTEEEKR-K 99 
                    555555555555556666666667999***************************988887777665554444***********99999877766.4 PP

                    xxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 223 kislllsllllalillalfgqtdg...........gglvasvliqsaslllvslgimllllllfalpsrsafkllrylgkiSygi 296
                      +   s++++++  ++l+  +d+           +g++ ++l ++  +++  + ++l+ +ll ++ + +    +ry + i ++i
     KIR61795.1 100 AERGGKSAVVAVGVAFFLAELGDKtmlatitlatkYGWFGTWLGSTLGMVAADALAILVGRLLGRHLPER---TIRYGAAILFAI 181
                    4455566666666677777777774455555554444444444444433333344444444444444444...677777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1389.21
//
Query:       KIR61796.1  [L=101]
Description: hypothetical protein TK50_30280 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.04   13.8   1.5      0.053   13.4   1.5    1.3  1  DUF1622   Protein of unknown function (DUF1622)


Domain annotation for each model (and alignments):
>> DUF1622  Protein of unknown function (DUF1622)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.5   2.9e-06     0.053      32      70 ..      30      68 ..      12      73 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.9e-06
     DUF1622 32 sllLgLeflvaadIlkTvvaptledigvLaaivliRtvL 70
                +l + L++l aa +l+ + ++ +++++  aa+v++Rt+L
  KIR61796.1 30 ALRVLLDLLTAAGLLRLAGDQGWTQLAGAAAVVALRTAL 68
                5666799******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 677.52
//
Query:       KIR61797.1  [L=68]
Description: hypothetical protein TK50_30285 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      132  (0.00736237); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 565.24
//
Query:       KIR61798.1  [L=491]
Description: protein tyrosine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-14   54.1   0.0    7.4e-12   45.4   0.0    2.7  2  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    4.3e-12   46.0   0.2    1.4e-08   34.5   0.1    3.0  3  ParA         NUBPL iron-transfer P-loop NTPase
    1.1e-09   38.4   0.1    2.1e-09   37.6   0.1    1.5  1  Wzz          Chain length determinant protein
      2e-08   34.4   0.0    4.1e-08   33.3   0.0    1.5  1  AAA_31       AAA domain
    9.3e-06   25.1   0.1    3.8e-05   23.1   0.0    1.9  2  MipZ         ATPase MipZ
    6.8e-05   22.7   0.7    0.00075   19.4   0.0    2.5  2  GNVR         G-rich domain on putative tyrosine kinase
     0.0024   17.5   0.5     0.0071   16.0   0.1    1.9  2  SRP54        SRP54-type protein, GTPase domain
  ------ inclusion threshold ------
       0.01   15.4   1.2      0.041   13.4   0.9    2.2  2  AAA_25       AAA domain
      0.017   14.3   0.1       0.11   11.6   0.0    2.0  2  ArsA_ATPase  Anion-transporting ATPase
      0.026   13.8   0.0      0.048   12.9   0.0    1.4  1  VirC1        VirC1 protein
      0.045   13.6   0.0        0.1   12.4   0.0    1.5  1  CLP1_P       mRNA cleavage and polyadenylation factor CLP1 P-
      0.046   13.6   0.0      0.085   12.8   0.0    1.4  1  APS_kinase   Adenylylsulphate kinase
      0.063   11.5   0.0      0.093   10.9   0.0    1.1  1  FTHFS        Formate--tetrahydrofolate ligase


Domain annotation for each model (and alignments):
>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.011        16      86     121 ..     195     228 ..     173     230 .. 0.76
   2 !   45.4   0.0   5.4e-15   7.4e-12       1      97 [.     263     445 ..     263     452 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.011
                 S...-TTCHHHHHHHHHHCTS-EEEEEE--CCHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  86 geneetllkealeelkqrygvpvlgviprdeavaea 121
                  +  +t+l+++++ + +++g p+lg+ip+d a   a
  KIR61798.1 195 TR-LDTRLRDSVTLQ-RATGSPLLGEIPFDAAARTA 228
                 44.468899999885.577***********987665 PP

  == domain 2  score: 45.4 bits;  conditional E-value: 5.4e-15
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 ia++s   G+GKTtl++nLa+ala++g+rV+lvDaD  ++  a + g e  +                                               
  KIR61798.1 263 IAVTSALQGEGKTTLSCNLAIALAEAGWRVALVDADLRRPKVAEYLGMEAGVGLtdvllgdvnvgdvvqrwgdksllvlpagsvppnpsellgskamad 361
                 68888888********************************99965555555555778888888899999****************************** PP

                 ............................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHHH CS
                 ............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ............................................dlkrllellealgkkkalllkiagvvlnrvdgeneetllkeal 97 
                                                             d+ +++  ++al+ +    ++++g vln+ +  ++et ++e++
  KIR61798.1 362 lllvlresadivvidtaplrtvtdgvvvavqadgalmvsrygrtDRGQVGAAAQALQAV---SVRLLGCVLNMAKLGRAETYQYESY 445
                 ******************************99999999999877777777777777755...5999999999999998888887776 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.79   1.1e+03     197     217 ..     207     227 ..     202     248 .. 0.83
   2 !   34.5   0.1     1e-11   1.4e-08       4      55 ..     261     312 ..     258     330 .. 0.94
   3 !    7.8   0.0    0.0015       2.1     111     178 ..     369     435 ..     354     446 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.79
        ParA 197 laeelgvpllgeipldpeire 217
                 l++++g pllgeip+d + r+
  KIR61798.1 207 LQRATGSPLLGEIPFDAAART 227
                 6778899********998775 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 1e-11
        ParA   4 kviavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgvee 55 
                 +viav+S+  G GK+t+++nlA+aLa+ g +v+l+DaD+  p +++ lg+e 
  KIR61798.1 261 RVIAVTSALQGEGKTTLSCNLAIALAEAGWRVALVDADLRRPKVAEYLGMEA 312
                 79**********************************************9986 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0015
        ParA 111 elDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfv 178
                 + D+++iD+ P  + ++  v+  ++ +ga++V+   +    +v  a++ ++ v+v++lG v Nm+ + 
  KIR61798.1 369 SADIVVIDTAPLRT-VTDGVVVAVQADGALMVSRYGRTDRGQVGAAAQALQAVSVRLLGCVLNMAKLG 435
                 67999999988544.333566678889*************************************9865 PP

>> Wzz  Chain length determinant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.1   1.5e-12   2.1e-09       3      89 ..       1      85 [.       1      88 [. 0.93

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1.5e-12
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EEEEEEEES--CHHHHHHHHHCCHHHHHHHHHHHHHHHHHSSSS--EEE CS
         Wzz  3 iDLieLlsvLwkrkklIilvtllfallaviyaflatpkYtataqilvpekkqveassltaqdvqanlqlasteieilkSrdvlekvi 89
                +D+++ l+++++++++++l +++++++a+++++   p+Y a+ +  v +++q   s+ ++++v  + q +++++ +l+S+++ +kv+
  KIR61798.1  1 MDVRDFLRTVRRSWWVVLLSVMVGLAVAALVTVRTEPRYAASVTFFVTTPNQ-GVSDAYQGNVFMQ-QRVKSYADLLQSDRLAQKVV 85
                6999************************************************.5588888899988.77999*************98 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0     3e-11   4.1e-08       2     128 ..     261     380 ..     260     401 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 3e-11
      AAA_31   2 kvIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQanatt.glgiekneiektlyevlieeknikeaiiktkvenldlipssidLaeaeielve 99 
                 +vIa++    G GKTT s+nla ala++g +v lvD+D        +lg+   e+   l++vl+ ++n+ +++++   ++l ++p+         el++
  KIR61798.1 261 RVIAVTSALQGEGKTTLSCNLAIALAEAGWRVALVDADLRRPKVAeYLGM---EAGVGLTDVLLGDVNVGDVVQRWGDKSLLVLPAGSV-PPNPSELLG 355
                 89************************************987655415564...66779****************888999999999864.445556654 PP

      AAA_31 100 lekkeeilkellekvkdeYDyiiiDcpPs 128
                  +    ++ +ll  ++++ D+++iD+ P 
  KIR61798.1 356 SK----AMADLLLVLRESADIVVIDTAPL 380
                 43....44677888999999999999994 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   2.8e-08   3.8e-05       2      49 ..     262     309 ..     261     322 .. 0.91
   2 ?   -1.1   0.0      0.65     9e+02      87     108 ..     357     378 ..     343     396 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2.8e-08
                 EEEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHHHHH CS
        MipZ   2 vivlgnekGGsGksttavhvavaLlkkGarvaaidldlrqrtlaryle 49 
                 vi ++    G Gk+t +  +a+aL+++G rva +d dlr+  +a yl+
  KIR61798.1 262 VIAVTSALQGEGKTTLSCNLAIALAEAGWRVALVDADLRRPKVAEYLG 309
                 6777777889***********************************986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.65
                 HHHHHHHHHHHHH-SEEEEE-- CS
        MipZ  87 aeleelvadleaeldfividtP 108
                 +++++l+  l +++d++vidt 
  KIR61798.1 357 KAMADLLLVLRESADIVVIDTA 378
                 5677777888999*******94 PP

>> GNVR  G-rich domain on putative tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.3      0.36     5e+02      60      77 ..      15      32 ..       9      35 .. 0.81
   2 !   19.4   0.0   5.5e-07   0.00075      39      81 ..     153     195 ..     121     196 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.36
        GNVR 60 livvlalllGlllgvalv 77
                 +v+l++++Gl ++++++
  KIR61798.1 15 WVVLLSVMVGLAVAALVT 32
                58999*****99987664 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 5.5e-07
        GNVR  39 gnVrivDeavvpekpvkPkkalivvlalllGlllgvalvllrr 81 
                   V+++    v ++pv+P+ a  ++l++l+Gll g++l+llr+
  KIR61798.1 153 VKVEVISGPRVGSSPVSPNPARNLALGALAGLLGGIGLALLRT 195
                 46889************************************97 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   5.1e-06    0.0071       9      48 ..     269     308 ..     261     318 .. 0.88
   2 ?   -1.5   0.1       1.2   1.7e+03      82      92 ..     368     378 ..     359     386 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.1e-06
                 STTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHH CS
       SRP54   9 lqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQL 48 
                 lqG GKTt    La  l + g +v+lv aD  R+  +e L
  KIR61798.1 269 LQGEGKTTLSCNLAIALAEAGWRVALVDADLRRPKVAEYL 308
                 8********************************9877766 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.2
                 TTSSEEEEEE- CS
       SRP54  82 ekidvvlvDTa 92 
                 e++d+v++DTa
  KIR61798.1 368 ESADIVVIDTA 378
                 678*******9 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.6   2.3e+03      54      91 ..     206     242 ..     201     258 .. 0.60
   2 ?   13.4   0.9     3e-05     0.041      30      64 ..     258     293 ..     241     379 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.6
      AAA_25  54 alavatGkpwlg..pvapeqgkVlyvsaEdsedelrrRlr 91 
                  l  atG+p+lg  p+    ++  +++++ +     +R++
  KIR61798.1 206 TLQRATGSPLLGeiPFDAAARTAPLIVGDAAT---TPRAE 242
                 56678999999988776655555555544333...44444 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3e-05
      AAA_25  30 lpagelallaGapgtGKttlaldlalava.tGkpwl 64 
                  pa  +a+  + +g GKttl ++la+a+a  G+ ++
  KIR61798.1 258 EPARVIAVTSALQGEGKTTLSCNLAIALAeAGWRVA 293
                 58889999*********************7777654 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.1e-05      0.11      11      38 ..     271     298 ..     261     304 .. 0.91
   2 ?   -0.1   0.0       0.3   4.1e+02     123     134 ..     368     379 ..     350     383 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.1e-05
                  TSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase  11 GVGKttvsaatavklsekgkkvllistD 38 
                  G GKtt+s+ +a+ l+e g +v l+  D
   KIR61798.1 271 GEGKTTLSCNLAIALAEAGWRVALVDAD 298
                  78********************999877 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.3
                  SSSSEEEEESBS CS
  ArsA_ATPase 123 eeydvvvlDtaP 134
                  e  d+vv+DtaP
   KIR61798.1 368 ESADIVVIDTAP 379
                  5669*******9 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.5e-05     0.048       3      43 ..     262     302 ..     260     307 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.5e-05
       VirC1   3 litfcslkGGaGkttalmglcsalasdgkrvalfeadenrP 43 
                 +i+++s   G Gktt    l  ala  g rval +ad  rP
  KIR61798.1 262 VIAVTSALQGEGKTTLSCNLAIALAEAGWRVALVDADLRRP 302
                 678889999****************************9999 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.3e-05       0.1       5      37 ..     272     304 ..     270     319 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.3e-05
      CLP1_P   5 sGKSTlarlLlNyalrkgrkpvyvDlDvGqsei 37 
                  GK+Tl+ +L+  ++++g+++++vD+D+  +++
  KIR61798.1 272 EGKTTLSCNLAIALAEAGWRVALVDADLRRPKV 304
                 5**************************987765 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.1e-05     0.085       8      53 ..     267     312 ..     260     349 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.1e-05
                 ESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--SSH CS
  APS_kinase   8 tGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgfse 53 
                 + l g GK+t++++l+ +L e g +v l+d d  R ++ + Lg+++
  KIR61798.1 267 SALQGEGKTTLSCNLAIALAEAGWRVALVDADLRRPKVAEYLGMEA 312
                 5689*****************************9999999999875 PP

>> FTHFS  Formate--tetrahydrofolate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.7e-05     0.093      59     106 ..     262     312 ..     245     321 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.7e-05
                 EEESS--TT--SHHHHHHHHHHHHHHTT--EEEE...E----SHHHHCST- CS
       FTHFS  59 vtaitPtplGeGKttttigLaqalnklgkkavaa...lRepslGPvfgiKG 106
                 v a+t +  GeGKtt +  La al+++g +++++   lR p +   +g+  
  KIR61798.1 262 VIAVTSALQGEGKTTLSCNLAIALAEAGWRVALVdadLRRPKVAEYLGMEA 312
                 7799999*******************9998775333388888888877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 3234.39
//
Query:       KIR61799.1  [L=184]
Description: protein tyrosine phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-19   69.4   0.0    5.9e-17   62.4   0.0    2.0  1  LMWPc     Low molecular weight phosphotyrosine protein phosph


Domain annotation for each model (and alignments):
>> LMWPc  Low molecular weight phosphotyrosine protein phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   3.3e-21   5.9e-17       1     111 [.       5     134 ..       5     176 .. 0.78

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 3.3e-21
                 EEEEESSSSSHHHHHHHHHHHHHHHTT-CCCEEEEEEESTSTTT-B--HHHHHHHHHTTS--TT-BB-BS-HHHHHHSSEEEESSHHHHHHHHHHCCTT CS
       LMWPc   1 vlfvClgNicRSpmAealfrkelekagleekvevdSaGtgalvgkradpravevlkekgislsghvarqlskeelaelDlilamdeenkreleslapek 99 
                 +lfvC +N cRSpmAe l+ +++ k      vev SaGt a  g++++p a+ev++e g +  + ++r l++ +l ++ l+l+ ++++     s  p+ 
  KIR61799.1   5 ILFVCHANLCRSPMAEYLAGQLMAKL----PVEVASAGTDAVDGRPMHPYAAEVAAETGRDPAEFRSRALTTAHLVDAALVLTSTRRQRSACVSRLPA- 98 
                 89********************9994....67***************************************************999999777777777. PP

                 GGGGEEEGGGG........................S CS
       LMWPc 100 ekakvkllgey........................t 111
                 + +++++l+++                         
  KIR61799.1  99 ALHRTFTLRQFgrlagaagtpdgadvgalraavraA 134
                 889999999997665555555555555555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1253.49
//
Query:       KIR61800.1  [L=419]
Description: glycosyl transferase family 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-17   63.9  17.4    2.4e-17   63.9  17.4    2.8  3  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    1.7e-13   51.1   0.2    6.7e-13   49.2   0.1    2.0  2  Glyco_trans_1_4  Glycosyl transferases group 1
    5.1e-13   49.4   2.1    1.2e-12   48.2   2.1    1.6  1  Glyco_transf_4   Glycosyltransferase Family 4
    1.2e-11   44.4   0.0      2e-11   43.7   0.0    1.3  1  Glycos_transf_1  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.095   12.7   0.0        6.9    6.7   0.0    2.3  2  Glyco_trans_4_2  Glycosyl transferase 4-like
       0.14   11.8   0.0       0.32   10.6   0.0    1.7  1  Glyco_transf_5   Starch synthase catalytic domain


Domain annotation for each model (and alignments):
>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9  17.4   7.9e-21   2.4e-17       9     160 .]      20     196 ..      16     196 .. 0.68
   2 ?    1.8   1.5     0.098   2.9e+02      57     129 ..     205     281 ..     197     288 .. 0.74
   3 ?   -2.5   5.0       2.1   6.2e+03       6      61 ..     262     318 ..     230     415 .. 0.53

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 7.9e-21
  Glyco_trans_4_4   9 elaraLaarGheVtvlt......papapg..........apeleedgvrvhrlpvprrpspladlaalralrrll..........rqrrerpdv 76 
                       la++LaarGheV+vlt           g          ++e + ++++v+r+p   ++    d++  ++++++l          r +  ++dv
       KIR61800.1  20 SLAEQLAARGHEVRVLTgfpdypG----GqvypgwrqrwRYETRSERLTVRRVPRWSAG----DASVRARVAGWLsfaasagtigRGHLAGVDV 105
                      69***************8644330....2566656654455566677777777644443....4444444444443333335558889****** PP

  Glyco_trans_4_4  77 vhahspt..aglaarlarrrrgiplvvtlhg...lllrrgsgavrrly..ralerrllrradavlvvseaeaeelralgvpadrvvvvpng 160
                      +++h+++  + +aa l+r+   +p v+++++    l ++g ++ ++++  +a+ r+l+r+ad+v v  ++++++++a g+++ rv+++ n+
       KIR61800.1 106 LYVHQLPaaTFAAAGLLRLLGAVPTVLHVQDvhpELEAQGTTPTPWAArvAAATRWLYRSADLVAVAAPGMRDLVVAGGADPGRVRLLLNW 196
                      *****6533335555777666888877777532233445545555554334779********************************98876 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.098
  Glyco_trans_4_4  57 laalralrrllrqrrerpdvvhahsptaglaarlarrrrgiplvvtlhglllrrg..sgavrrlyral....errllrr 129
                      ++ +r +rrl+ + + r  v+ha ++ a    + a  r+ +pl  t+   l+ +g    +vrrl+++l     r+++rr
       KIR61800.1 205 AEPTREARRLV-RGDGRCVVMHAGTIGARHGLETAV-RAAAPLRGTMDLVLVGSGpgEERVRRLAAELgtdnVRFVARR 281
                      45578889998.689999999999988777677777.889999999987665444448889999988866666666666 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.1
  Glyco_trans_4_4   6 yvaelaraLaarGheVtvltpapapg....apeleedgvrvhrlpvprrpspladlaalr 61 
                      +v++la++L  +   V+ ++++ + +      +++   v ++ lp  r+   ++ l+a++
       KIR61800.1 262 RVRRLAAELGTD--NVRFVARRSPLEmadlYAAADYQLVMLRDLPELRGT-IPGKLQAAF 318
                      333333333333..344444333333222111122333333333333332.233333333 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.92   2.8e+03      18      79 ..     160     172 ..     117     201 .. 0.64
   2 !   49.2   0.1   2.2e-16   6.7e-13       3     127 ..     222     356 ..     220     360 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.92
                      HHHHHHHHHHH.HHEEEEEES---..HHHHHHHTT-T.TEEEE---THHHHHHHH-SEEEE- CS
  Glyco_trans_1_4  18 dllleavpllrkkdvrlvivGdgprpeeleelaagleerveftGfvedlaellaaadvfvaP 79 
                      ++l + + l++                                                 + 
       KIR61800.1 160 RWLYRSADLVA-------------------------------------------------VA 172
                      34444443333.................................................22 PP

  == domain 2  score: 49.2 bits;  conditional E-value: 2.2e-16
                      EEEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---...HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--....-...--S CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkkdvrlvivGdgp.rpeeleelaa..gleerveftGfv..edlaellaaadvfvaPs....e...gfg 84 
                      v+++ G +   ++g++  ++a++ lr   + lv+vG+gp + e++++laa  g  ++v+f+ ++   ++a+l+aaad  ++ +    e   +++
       KIR61800.1 222 VVMHAGTI-GARHGLETAVRAAAPLRGT-MDLVLVGSGPgE-ERVRRLAAelGT-DNVRFVARRspLEMADLYAAADYQLVMLrdlpElrgTIP 311
                      67888999.4559*********999955.99********76.599877765664.89*******7556***********99997777355579* PP

                      HHHHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHH CS
  Glyco_trans_1_4  85 lkllEamaaglpvVatdvggiaevv..gengllvppgdpealaea 127
                       kl  a+ ++ pvVa++ g + e+v   ++gl +pp+d + la++
       KIR61800.1 312 GKLQAAFGCAAPVVASAGGDTVEIVerARAGLSCPPEDWATLADR 356
                      *****************9989**9987799*******99999986 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   2.1   3.9e-16   1.2e-12      11     167 ..      21     198 ..      18     201 .. 0.77

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 3.9e-16
  Glyco_transf_4  11 LaraLarrGheVtvvtpgddgpleeev............elvvrvprvplpllkrllrslaflrrlrrllkre........kpDvvHahspaalg 85 
                     La++La+rGheV+v+t  +d p ++                   v+rvp+++ +++  + + +  l  ++ ++        ++Dv+ +h+ +a+ 
      KIR61800.1  21 LAEQLAARGHEVRVLTGFPDYPGGQVYpgwrqrwryetrSERLTVRRVPRWSAGDASVRARVAGWLSFAASAGtigrghlaGVDVLYVHQLPAAT 115
                     9**************554444444444557776666669444555555555555555444444333333333333444799************99 PP

  Glyco_transf_4  86 aallalrr.rlgiplVltvHglye.krllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvD 167
                     +a++ l+r    +p+Vl+v +  +   + +    p+ +++ a  r+l+r+ad v +  + ++d +++  g +p +++ + n  D
      KIR61800.1 116 FAAAGLLRlLGAVPTVLHVQDVHPeLEAQGTTPTPWAARVAAATRWLYRSADLVAVAAPGMRDLVVA-GGADPGRVRLLLNWTD 198
                     99999888999***********999888889999*********************************.*********9999887 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   6.6e-15     2e-11       9     169 ..     214     375 ..     208     378 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 6.6e-15
                      TTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESS CS
  Glycos_transf_1   9 lgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsis 102
                      l+  +++ ++   g +  + g++++++a+a l    +    lv++G+g+ e+++++la+el+  dnv+f+ + s+ ++  l+ +ad  ++  + 
       KIR61800.1 214 LVRGDGRCVVMHAGTIGARHGLETAVRAAAPL----RGTMDLVLVGSGPGEERVRRLAAELGT-DNVRFVARRSPLEMADLYAAADYQLVMLRD 302
                      5666788899999*****************98....578************************.**********************98888888 PP

                      .....BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSH.HHHHHHHHHH CS
  Glycos_transf_1 103 .....EgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairkllede.elrerlgena 169
                              +  l  A+ +  pv+as+ g   e+v+ +  Gl ++p+++++la+++  + + +   r ++g+++
       KIR61800.1 303 lpelrGTIPGKLQAAFGCAAPVVASAGGDTVEIVERARAGLSCPPEDWATLADRFWLAATIPsAARLEMGRRG 375
                      8989899999*******************************************98766666655555555555 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.021        63      16      37 ..      21      42 ..      11      64 .. 0.82
   2 ?    6.7   0.0    0.0023       6.9      75     136 ..     103     170 ..     101     173 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.021
  Glyco_trans_4_2 16 lakeLakrgyeVhvitpkkgak 37
                     la+ La+rg+eV v+t  +++ 
       KIR61800.1 21 LAEQLAARGHEVRVLTGFPDYP 42
                     7899***********9877765 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0023
  Glyco_trans_4_2  75 PDvvhahyakpy.gllgslaarlsgvipvvlsvwGldv.....lkfpkksk...lkkl..llklalkkatkvi 136
                       Dv+++h+ +   + +++l+ rl+g +p+vl v+  dv      ++    +   + ++  + ++++++a++v+
       KIR61800.1 103 VDVLYVHQLPAAtFAAAGLL-RLLGAVPTVLHVQ--DVhpeleAQGTT--PtpwAARVaaATRWLYRSADLVA 170
                      59******988856666676.99999*****999..664342222222..13342222446666666666665 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00011      0.32      21      43 ..      17      41 ..      15     142 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
  Glyco_transf_5 21 vvgaLpkaLaklghdvrvil..Pry 43
                    v g+L+++La++gh+vrv++  P+y
      KIR61800.1 17 VPGSLAEQLAARGHEVRVLTgfPDY 41
                    789****************844555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2857.02
//
Query:       KIR61801.1  [L=229]
Description: hypothetical protein TK50_30310 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0006   20.0   4.7     0.0015   18.8   4.7    1.6  1  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
     0.0092   16.0   1.5     0.0092   16.0   1.5    2.1  3  Big_1            Bacterial Ig-like domain (group 1)
  ------ inclusion threshold ------
       0.03   14.7   0.1      0.041   14.3   0.1    1.2  1  DUF4198          Domain of unknown function (DUF4198)
        1.4    9.7   8.1       0.13   13.0   1.4    2.6  3  ACC_epsilon      Acyl-CoA carboxylase epsilon subunit


Domain annotation for each model (and alignments):
>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   4.7   3.3e-07    0.0015       5      68 ..      94     158 ..      92     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.3e-07
  CarboxypepD_reg   5 rVtdasgapiagatVtvtnadtgtvastttdadGafrlrglpp..gtysvtvsapGyatatreevt 68 
                      +V+ ++g  +a a V+++ a+  t  +++tda G+f+ +  p   g+y  t+  +    +++ ++t
       KIR61801.1  94 TVRRSDGSTVAMAPVAFR-AAAPTHFTVVTDAAGNFTTTYTPDtpGQYLFTAVGQTTGRTASATLT 158
                      899***************.6999***************9888777888888854444444433344 PP

>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.3   5.6e+03      23      28 ..      77      82 ..      73      88 .. 0.52
   2 !   16.0   1.5   2.1e-06    0.0092      12      64 .]      94     144 ..      91     144 .. 0.88
   3 ?   -3.6   0.2       2.7   1.2e+04       5      12 ..     153     160 ..     152     162 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.3
       Big_1 23 gatVtf 28
                ++tVt+
  KIR61801.1 77 DITVTI 82
                333333 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 2.1e-06
       Big_1  12 tvkDangnpvagatVtfsvsggalsassgtTdanGkatvtltstkagtvtvtA 64 
                 tv+ ++g  va a+V f++ + +    +++Tda G++t+t t  ++g++  tA
  KIR61801.1  94 TVRRSDGSTVAMAPVAFRAAAPTH--FTVVTDAAGNFTTTYTPDTPGQYLFTA 144
                 899999************999443..49*******************997776 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 2.7
       Big_1   5 dtntltat 12 
                 +++tlt+ 
  KIR61801.1 153 ASATLTVL 160
                 45566665 PP

>> DUF4198  Domain of unknown function (DUF4198)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   9.1e-06     0.041     144     211 ..      54     146 ..      49     148 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.1e-06
     DUF4198 144 pydlkageelevqvl.ldGkPlagaeveveyggt.....................ryrdapdeikv.ktdadGvvt..ftlpkaGlwlleaeh 211
                 p+++++g++ ++  + +    + + +v++++  +                      +r a+ ++++  tda G +t  +t++ +G++l++a+ 
  KIR61801.1  54 PSTIYVGDTTTLSGFgFGPNEVVDITVTITPLAAglpgqstvrrsdgstvamapvAFRAAAPTHFTvVTDAAGNFTttYTPDTPGQYLFTAVG 146
                 5555555555555553333455566666666655555555555444444444444455555555556*******964489**********986 PP

>> ACC_epsilon  Acyl-CoA carboxylase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.4   2.9e-05      0.13      17      48 ..       9      40 ..       7      48 .. 0.83
   2 ?   -0.4   0.0      0.44     2e+03      19      43 ..     156     180 ..     151     187 .. 0.55
   3 ?   -4.1   0.1         4   1.8e+04      42      48 ..     217     223 ..     215     225 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.9e-05
  ACC_epsilon 17 ALtaVLaaraaaaaaaaaepapagsaWarper 48
                 ALt  La +aa++aa aa+p+p++s  ++p+ 
   KIR61801.1  9 ALTIGLAVVAAPTAAGAAQPQPTPSPTGSPQP 40
                 9*********************9999999883 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.44
  ACC_epsilon  19 taVLaaraaaaaaaaaepapagsaW 43 
                  t  ++ar ++++ + ++  p++  W
   KIR61801.1 156 TLTVLARPQPSPSPTKTHYPTHKPW 180
                  4444455555444444444443555 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 4
  ACC_epsilon  42 aWarper 48 
                  aW+r+ r
   KIR61801.1 217 AWRRRGR 223
                  6888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1574.09
//
Query:       KIR61802.1  [L=63]
Description: hypothetical protein TK50_30330 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 446.82
//
Query:       KIR61803.1  [L=607]
Description: nucleotidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-28   99.5   0.0    4.9e-28   98.3   0.0    1.6  1  5_nucleotid_C  5'-nucleotidase, C-terminal domain
    1.9e-11   44.9   0.0    3.1e-11   44.2   0.0    1.4  1  Metallophos    Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
        0.1   12.4   0.2       0.25   11.1   0.2    1.6  1  PsbQ           Oxygen evolving enhancer protein 3 (PsbQ)


Domain annotation for each model (and alignments):
>> 5_nucleotid_C  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.0   8.2e-32   4.9e-28       1     154 [.     377     555 ..     377     559 .. 0.85

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 8.2e-32
                    EEEEESSB....---HHTS--HHHHHHHHHH...........TGSTT--EEEEEGGG---.-BTTTEEEHHHHHHHS-S--EEEEEEEEHHHHHHH CS
  5_nucleotid_C   1 vigtttveldgrdlalrtgetnlgnliadal...........raaagadialangggira.dlpaGditvkdlltvlpfgntlvvveltGaqlkea 84 
                    v++++tvel++   + r+++t++ ++i+ ++           ++aa + +++a+++ +r+ ++paGd+  +d+++++ ++ntl +v ltGa+++++
     KIR61803.1 377 VVARSTVELSAA--ESRYKDTPILDFINHVQtevvtaalagtEHAALPVLSIAAPF-SRTaVFPAGDVRIRDVAGLYVYDNTLEAVVLTGAEVRAY 469
                    688899987775..566**************766666665555555558*******.777366********************************* PP

                    HHH.................HTTTTTS--TT-EEEESEEEEE-TTS-TT--EEEESSS-BEEE--TTSEEEEEEEHHHHTTGGG-H CS
  5_nucleotid_C  85 Len................esvsaskaasgrflqvsGlrytydlskpagervtslsvtvngkpldddktYkvatnsylasggdgfs 154
                    Le                 +++s++  ++ ++  +sGl y++d+s+p g+r+t+l +   g+p+ dd+ + va+n+y+ sgg++f+
     KIR61803.1 470 LEYsakyfttlavgapvdpATISDPAVPDYNYDVFSGLDYDIDVSRPVGQRITRLVLPGTGAPVADDARFVVAVNNYRRSGGGNFP 555
                    **9999999999999998666666666666666666*******************7766777**********************97 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   5.1e-15   3.1e-11       1     203 [.      49     296 ..      49     297 .. 0.72

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 5.1e-15
                  EEEEEEESBTB................TTCCTHHHHHHHHHHHHHHH..TTESEEEEESTSSSSSHHHHHHHHHHHHHHHH..........TSEE... CS
  Metallophos   1 lrilvigDlHl................algggqlddllkllddllre..ekpdlvllaGDlvdrgdlekellellaalvky..........pipv... 67 
                  l++l ++D+H+                ++ + + ++l++l++++++e   ++ lvl aGD +++++l ++++++ ++              +  +   
   KIR61803.1  49 LTVLGTSDTHGnvynwdyyrdaeyddsKHNDVGVAKLATLVNQIRAErtGRATLVLDAGDTIQGTPLATYYAKQ-EPITTTgethpmanamN--Ilky 143
                  5899******9999999999999988888888888888******77766888999999*******999988888.66666666566655443..2447 PP

                  .EEEC-TTS........CHHHHHHHHHHHHHHH....HHHHEHHHCEEETSEEEEEETTEEEEEEEESE...CEEE..............THHHHHHH CS
  Metallophos  68 .ylllGNHe........gfeeellnkygylgif....sepwrsdaevfnnlplaslgsgslkvlllhGg...spel..............lvsldklg 135
                   +++lGNHe        +       k+  +  f    ++  +  +++  +lp +       k + l G+      l              +++ +  g
   KIR61803.1 144 dAVTLGNHEfnyglpllA-------KWIGQLGFpalaANAVNEATGKPAYLPYVI------KEVRLGGHgapK--LkvgilgltnpgvaiWDKGNVEG 226
                  8********755443331.......333333333222333333344444555555......555555554340..23333444444458899999999 PP

                  HHHHSCHHHHCCHHHHHHHHHHTTCSEEEEEESSESS....CSSSCSCCHHHHHHHHHHTTESEEEEESSSS CS
  Metallophos 136 slnleleapepgdewlkdlekrekadwvivlgHsply....rgsgylfgdealedllkkygvdlvisGHtHv 203
                  +l++ + +++   +w    ++ ++ad viv +H + +    +g + + ++++++  ++ +g+d++++GH H 
   KIR61803.1 227 RLVFADMVETA-AKWVPV-MRARGADLVIVSAHGGDSgtssYGPELPNENPCTMIAEQVPGIDAILFGHAHN 296
                  99999999998.999999.******************9986666666666666666**************96 PP

>> PsbQ  Oxygen evolving enhancer protein 3 (PsbQ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   4.2e-05      0.25      26      67 ..       6      43 ..       3      66 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.2e-05
        PsbQ 26 eesRRavlglaaaalaagslaaaalaeaaeaikvgpppppng 67
                 +sRR vl++aaaa +a    aaa+a+aa +   ++p+p +g
  KIR61803.1  6 GASRRQVLAVAAAAATAPL-IAAAPARAAGS---TDPKPSRG 43
                589*****99999988865.77888888777...55555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4306.03
//
Query:       KIR61804.1  [L=220]
Description: hypothetical protein TK50_30340 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-13   49.7   2.0    9.1e-13   48.7   2.0    1.4  1  AbiEii    Nucleotidyl transferase AbiEii toxin, Type IV TA sy
  ------ inclusion threshold ------
       0.21   10.7   0.0       0.31   10.1   0.0    1.2  1  DUF1383   Protein of unknown function (DUF1383)


Domain annotation for each model (and alignments):
>> AbiEii  Nucleotidyl transferase AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   2.0     1e-16   9.1e-13      10     178 ..      22     167 ..      14     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 1e-16
      AbiEii  10 aladklvFkGGTaLslayglipRfSeDIDlsllr.gdrkellealkealeeiaaalaeeglkvklaasigege.dyeglrlrypaefggyarqkikiei 106
                 a ++++v+ GG a   a+gl +R +eD+Dl+ +  g   ++ + +++ale++  ++ + +   +la+   + + d + +          + + +i++ +
  KIR61804.1  22 AGRHRFVLGGGVAW-AAHGLFSRPTEDVDLFADVeGAAAAAAAGVRTALERAGFEVGDADPDSDLAELFAGFDrDMKDFV-------VSRGPRRIRLSL 112
                 6789*********5.6***************988*****************************99999987764444444.......5667779****9 PP

      AbiEii 107 gfreavppaerreippyleelggpafevpvysleellaeKllalldrgrdrsraRDlyDlalLleaeldaea 178
                 g  ++         p  ++         pv+++++l+a K  al     +r+++RD+ D+a++le++  ae 
  KIR61804.1 113 GRLDRN------RSPVVMDLG-------PVMDVRDLVANKTAALV----NRREVRDFIDVAAVLEHYSVAEV 167
                 887654......555555555.......9****************....****************7665554 PP

>> DUF1383  Protein of unknown function (DUF1383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   3.5e-05      0.31      33      77 ..       6      50 ..       3      70 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3.5e-05
     DUF1383 33 lekkFykevyeavvaal.ktlvvlkGgaAiaahlkeenavlkdldl 77
                ++++Fy+ev + +++   ++++vl Gg+A aah    +++ +d+dl
  KIR61804.1  6 PPDDFYREVARVALSVAgRHRFVLGGGVAWAAHGLFSRPT-EDVDL 50
                6799*******9999888***************8777765.55554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1566.30
//
Query:       KIR61805.1  [L=199]
Description: hypothetical protein TK50_30350 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1580.31
//
Query:       KIR61806.1  [L=62]
Description: hypothetical protein TK50_30355 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 463.43
//
Query:       KIR61807.1  [L=757]
Description: daunorubicin resistance protein DrrC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-19   70.6   0.0      2e-10   41.3   0.0    3.8  3  ABC_tran         ABC transporter
    1.5e-08   34.3   0.0      0.027   13.9   0.0    4.1  4  SMC_N            RecF/RecN/SMC N terminal domain
    1.1e-06   28.3   0.4      0.031   14.0   0.1    2.6  2  AAA_29           P-loop containing region of AAA domain
    1.8e-06   28.4   0.4       0.05   14.0   0.0    3.1  4  AAA_16           AAA ATPase domain
    3.2e-05   24.2   2.8     0.0092   16.3   0.3    3.2  3  DnaJ_CXXCXGXG    DnaJ central domain
    0.00031   20.7   0.1       0.12   12.2   0.0    2.4  2  RsgA_GTPase      RsgA GTPase
    0.00095   19.3   0.0       0.31   11.2   0.0    2.6  2  AAA_33           AAA domain
     0.0012   18.6   0.1      0.061   13.1   0.1    2.3  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0018   18.1   8.9          2    8.1   0.0    4.1  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0092   15.7   0.0         39    3.8   0.0    3.8  4  AAA_15           AAA ATPase domain
  ------ inclusion threshold ------
      0.016   14.8   0.7        1.4    8.5   0.1    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.019   14.9   0.2        7.4    6.5   0.0    2.3  2  NACHT            NACHT domain
      0.026   14.9   0.0      0.062   13.7   0.0    1.7  1  UvrA_DNA-bind    UvrA DNA-binding domain
       0.04   13.5   1.3         19    4.7   0.0    3.4  3  AAA_25           AAA domain
      0.049   14.1   0.0        7.5    7.0   0.0    2.2  2  AAA_23           AAA domain
      0.068   13.7   1.4         24    5.5   0.0    3.8  4  AAA_18           AAA domain
      0.075   12.7   2.4        4.4    7.0   0.3    3.1  3  AAA_30           AAA domain
       0.21   11.9   3.3         28    5.0   0.3    3.3  3  AAA_22           AAA domain
       0.65   10.0   6.4        2.4    8.2   0.1    3.1  3  Anti-TRAP        Tryptophan RNA-binding attenuator protein in


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   5.1e-05     0.048       2      28 ..      26      52 ..      25     116 .. 0.90
   2 !   10.3   0.0   0.00078      0.74      89     136 ..     322     371 ..     273     372 .. 0.82
   3 !   41.3   0.0   2.1e-13     2e-10       1     136 [.     473     675 ..     473     676 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.1e-05
                EEEEEEEETTSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  2 knvslklkegekvaivGenGaGKStLl 28
                  vs+++ + +++a++G +G+GKS+L+
  KIR61807.1 26 AAVSVDIPKRRLTAFTGVSGSGKSSLV 52
                579**********************96 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00078
                 HHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHT..SSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
    ABC_tran  89 lsklglkelkdtvvksspssLSgGqkqrvalarallkk..pkllllDEpt 136
                 l++l  ++l    ++++  sLSgG+ qrv+++r l +      +++DEpt
  KIR61807.1 322 LDSLVEIGLGYLSLDRESGSLSGGEAQRVKMVRHLGSSltDVTYVFDEPT 371
                 5555555566667788889**************99665114468899998 PP

  == domain 3  score: 41.3 bits;  conditional E-value: 2.1e-13
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSB.HHHH................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx................... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpelt.vren................... 79 
                 l++v++++  g +++++G  G+GKS+L   + g l   eG + +d+ +++  +++      g l      f + + vr                     
  KIR61807.1 473 LRDVDVDVPLGVLTVVTGVAGSGKSSL---IHGSLPRREGVVVVDQSPIRGSRRSNPATYTGLLDPVRAAFAKANkVRPAlfsansegacpkcrgigvv 568
                 6899*********************98...5799999**************777777777777777755555553255448888899************ PP

                 ............................................HHHTC.........HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHH CS
                 ............................................xxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ............................................esdee.........iekalsklglkelkdtvvksspssLSgGqkqrvalarallk 125
                                                             +   e         +  +l++l +++l    +++  ++LSgG++qr++la  + +
  KIR61807.1 569 ytdlammagvasvceecegrrftpqvlaytlrgknisevlgmsvT---EardffpsgpARSVLDRLTDVGLGYLSLGQPLTTLSGGERQRLKLAIHMGE 664
                 ***************************999999988888877642...0345888888999*********9999998888******************* PP

                 TSSEEEEESTT CS
                 xxxxxxxxxxx RF
    ABC_tran 126 kpkllllDEpt 136
                 k+  ++lDEpt
  KIR61807.1 665 KAHTYVLDEPT 675
                 **********9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.017        16      23      41 ..      34      52 ..      14      69 .. 0.82
   2 ?    4.0   0.0      0.03        28     135     210 ..     265     414 ..     148     418 .. 0.69
   3 !    6.1   0.0    0.0072       6.8      23      41 ..     483     500 ..     465     503 .. 0.77
   4 !   13.9   0.0   2.9e-05     0.027     136     209 ..     647     717 ..     556     723 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.017
                TSSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 23 sksftaivGpNGSGKsnll 41
                ++++ta +G  GSGKs+l+
  KIR61807.1 34 KRRLTAFTGVSGSGKSSLV 52
                5679************986 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.03
                 T...........................................................................CS-HHHHHHHHHHHHHHHHCCS- CS
                 x...........................................................................xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e...........................................................................lLSgGektLvalaLlfAiqkvkp 158
                 +                                                                           +LSgGe + v +     + +   
  KIR61807.1 265 TcgdcagtrlnraalsariagrniaecsamqisdlaafvrgiddpsvaplvgnlrelldslveiglgylsldresgSLSGGEAQRVKMVR--HLGSSLT 361
                 055555555555555555555555555555555555555555556666666666666666666666666666666678888876554433..3455555 PP

                 -SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 159 aplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvg 210
                    y++De    L  + ++++ +ll + +++   ++v+ ++ e+++ ad++v 
  KIR61807.1 362 DVTYVFDEPTVGLHPHDIARMNDLLLRLRDKgNTVLVVEHKPETIAIADHVVD 414
                 667*******************998776666499************9999875 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0072
                 TSSEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnll 41 
                    +t+++G  GSGKs+l+
  KIR61807.1 483 GV-LTVVTGVAGSGKSSLI 500
                 44.79************98 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 2.9e-05
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklv 209
                 +LSgGe++     L +Ai++ ++a  y+lDe    L  + v k+  ll++  +    ++vi +++ ++++ad +v
  KIR61807.1 647 TLSGGERQ----RLKLAIHMGEKAHTYVLDEPTTGLHLADVDKLLALLDRLVDAgNTVVVIEHHQAVMAHADWIV 717
                 89****98....788899*******************************998876789999*******9999776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   3.3e-05     0.031      16      39 ..      29      52 ..      23      60 .. 0.85
   2 !   11.6   0.0   0.00019      0.18      17      39 ..     478     500 ..     468     503 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.3e-05
      AAA_29 16 tieidlkgatlltGpsGsGKSTll 39
                +++i  +  t +tG sGsGKS+l+
  KIR61807.1 29 SVDIPKRRLTAFTGVSGSGKSSLV 52
                566776679*************97 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00019
      AAA_29  17 ieidlkg.atlltGpsGsGKSTll 39 
                 +++ l g  t++tG  GsGKS+l+
  KIR61807.1 478 VDVPL-GvLTVVTGVAGSGKSSLI 500
                 44443.4589************98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00042       0.4      24      50 ..      35      62 ..      21     142 .. 0.73
   2 ?   -2.7   0.0       7.3   6.9e+03     106     127 ..     361     390 ..     277     400 .. 0.53
   3 !   14.0   0.0   5.3e-05      0.05       4      57 ..     465     514 ..     462     561 .. 0.68
   4 ?   -2.2   0.0       5.1   4.8e+03     122     140 ..     685     702 ..     644     712 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00042
      AAA_16 24 pelvllsGesGvGKsslv.rellralek 50
                 +l+ ++G sG+GKsslv  +++ + ++
  KIR61807.1 35 RRLTAFTGVSGSGKSSLVfGTIAAESQR 62
                38999*************6666644443 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 7.3
      AAA_16 106 a........avpelagaeasrllellkrll 127
                 +        ++  l++ +  r+++ll rl 
  KIR61807.1 361 TdvtyvfdePTVGLHPHDIARMNDLLLRLR 390
                 033333333334444444455555555554 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 5.3e-05
      AAA_16   4 GReeeleqLlsalervrsgrpelvllsGesGvGKsslv.rellralekdggiflr 57 
                  R+++l+ L+++  +v  g   l++++G +G+GKssl+  +l+r   ++g++++ 
  KIR61807.1 465 IRGADLHNLRDVDVDVPLG--VLTVVTGVAGSGKSSLIhGSLPR---REGVVVVD 514
                 5666666666655555555..799**************555554...44555533 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 5.1
      AAA_16 122 llkrllallsrderplvlv 140
                 +l +ll++l   +  +v+v
  KIR61807.1 685 KLLALLDRLVD-AGNTVVV 702
                 22222222222.2224444 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.044        41      16      26 ..     145     155 ..     134     168 .. 0.69
   2 ?    1.2   0.1      0.51   4.8e+02      15      24 ..     264     273 ..     252     295 .. 0.66
   3 !   16.3   0.3   9.8e-06    0.0092      14      50 ..     556     588 ..     549     593 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.044
  DnaJ_CXXCXGXG  16 tCktCkGsGvv 26 
                     C+tC+G G+v
     KIR61807.1 145 MCPTCEGLGRV 155
                    47777776643 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.51
  DnaJ_CXXCXGXG  15 ktCktCkGsG 24 
                     tC +C G+ 
     KIR61807.1 264 ATCGDCAGTR 273
                    4677777765 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 9.8e-06
  DnaJ_CXXCXGXG  14 kktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGt 50 
                    +  C++C+G Gvv +       ++  + s C+eCeG+
     KIR61807.1 556 EGACPKCRGIGVVYTDL----AMMAGVASVCEECEGR 588
                    457********654443....25557789*******8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00013      0.12      80     117 ..      15      53 ..       6      71 .. 0.74
   2 ?    5.9   0.0     0.012        11     101     121 ..     485     505 ..     460     521 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
                  EE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHH CS
  RsgA_GTPase  80 llvsaktkegleelkellkd.ktsvlvGqSGvGKStLin 117
                  + v+  ++++l++++  + + +++++ G SG GKS+L+ 
   KIR61807.1  15 IEVRGARENNLAAVSVDIPKrRLTAFTGVSGSGKSSLVF 53 
                  5556666778888888887779***************84 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.012
                  EEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallp 121
                  ++v+ G  G GKS+Li   lp
   KIR61807.1 485 LTVVTGVAGSGKSSLIHGSLP 505
                  789************986555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.019        18       2      17 ..      38      53 ..      37      96 .. 0.87
   2 !   11.2   0.0   0.00033      0.31       1      38 [.     485     523 ..     485     550 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.019
      AAA_33  2 vllvGlpGsGKstlae 17
                + + G++GsGKs l+ 
  KIR61807.1 38 TAFTGVSGSGKSSLVF 53
                6799********9975 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00033
      AAA_33   1 lvllvGlpGsGKstlaer.llkklgavllssdtlrrrlf 38 
                 l+++ G++GsGKs l+++ l +++g+v++++  +r   +
  KIR61807.1 485 LTVVTGVAGSGKSSLIHGsLPRREGVVVVDQSPIRGSRR 523
                 67899************9566777799999998877554 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.071        67       4      21 ..      41      58 ..      38      98 .. 0.66
   2 !   13.1   0.1   6.5e-05     0.061       1      21 [.     486     506 ..     486     531 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.071
  Viral_helicase1  4 hGvpGcGKStlirkllrt 21
                      Gv G+GKS+l+   +  
       KIR61807.1 41 TGVSGSGKSSLVFGTIAA 58
                     7*********98655554 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 6.5e-05
  Viral_helicase1   1 ivvhGvpGcGKStlirkllrt 21 
                      +vv Gv+G+GKS+li   l  
       KIR61807.1 486 TVVTGVAGSGKSSLIHGSLPR 506
                      69*************876655 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.7       0.2   1.9e+02       1      15 [.      37      51 ..      37      52 .. 0.93
   2 !    8.1   0.0    0.0021         2     260     299 ..     364     403 ..     337     407 .. 0.80
   3 ?    2.9   0.3     0.087        82       1      16 [.     485     500 ..     485     501 .. 0.94
   4 !    7.9   0.0    0.0026       2.5     233     287 ..     644     695 ..     640     711 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.2
      AAA_21  1 lnvliGpNgsGKSnL 15
                l++++G  gsGKS+L
  KIR61807.1 37 LTAFTGVSGSGKSSL 51
                699**********98 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0021
      AAA_21 260 llliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299
                 ++++DEp  gLHP+ ++r  +ll +l+++g  v+++ H p
  KIR61807.1 364 TYVFDEPTVGLHPHDIARMNDLLLRLRDKGNTVLVVEHKP 403
                 689**********777777788888877788887765555 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.087
      AAA_21   1 lnvliGpNgsGKSnLL 16 
                 l+v++G  gsGKS+L+
  KIR61807.1 485 LTVVTGVAGSGKSSLI 500
                 79************97 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0026
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr 287
                 p++ lS G ++ l+l+  + + +    ++++DEp +gLH + + +ll ll++l +
  KIR61807.1 644 PLTTLSGGERQRLKLAIHMGEKA---HTYVLDEPTTGLHLADVDKLLALLDRLVD 695
                 67788999999999999999988...67************766666666655544 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.36   3.4e+02      17      39 ..      28      51 ..      24      53 .. 0.81
   2 ?    3.3   0.0     0.059        56     324     357 ..     362     395 ..     352     406 .. 0.85
   3 ?    2.3   0.0      0.12   1.1e+02      12      41 ..     474     501 ..     465     502 .. 0.81
   4 ?    3.8   0.0     0.042        39     321     364 ..     663     706 ..     638     711 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.36
      AAA_15 17 veidlsee.ltvliGkNnsGKSsi 39
                v++d+ +  lt + G  +sGKSs+
  KIR61807.1 28 VSVDIPKRrLTAFTGVSGSGKSSL 51
                566666667**************8 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.059
      AAA_15 324 nvilliEEPEahLHpqaqkvlikllkelandnkt 357
                  v+++++EP + LHp     + +ll++l ++++t
  KIR61807.1 362 DVTYVFDEPTVGLHPHDIARMNDLLLRLRDKGNT 395
                 6789*****************9999999999873 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.12
      AAA_15  12 RslkdveidlseeltvliGkNnsGKSsile 41 
                 R  + v+++l   ltv+ G  +sGKSs+++
  KIR61807.1 474 RDVD-VDVPLGV-LTVVTGVAGSGKSSLIH 501
                 4444.7788888.**************985 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.042
      AAA_15 321 eeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                  ek ++++++EP + LH      l  ll +l++ ++t v+i+ H
  KIR61807.1 663 GEKAHTYVLDEPTTGLHLADVDKLLALLDRLVDAGNTVVVIEHH 706
                 57899*****************************9987777766 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.025        24       3      26 ..      38      61 ..      36      67 .. 0.82
   2 ?    8.5   0.1    0.0015       1.4       2      25 ..     485     508 ..     484     515 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.025
                EEEEESTTCCHHHHHHHHHCT--S CS
        cobW  3 tvltGflGsGKTtLlnhllenrag 26
                t +tG  GsGK++L+  +++ +++
  KIR61807.1 38 TAFTGVSGSGKSSLVFGTIAAESQ 61
                779************999966554 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0015
                 EEEEEESTTCCHHHHHHHHHCT-- CS
        cobW   2 vtvltGflGsGKTtLlnhllenra 25 
                  tv+tG  GsGK++L+   l +r+
  KIR61807.1 485 LTVVTGVAGSGKSSLIHGSLPRRE 508
                 589*************98886655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0079       7.4       1      63 [.      36      99 ..      36     122 .. 0.67
   2 ?    6.1   0.2      0.01       9.7       3      18 ..     486     501 ..     484     503 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0079
                SCEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-.....-HCHHHCCCCT CS
       NACHT  1 rlvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna..rsladllfsqlp 63
                rl + +G +GsGK+ L+ + + a  ++  ++ + + ++  ++ +lsr+     r l   ++ ++ 
  KIR61807.1 36 RLTAFTGVSGSGKSSLVFGTIAAESQRMINETY-SAFLQSFMPSLSRPDVDslRNLSAAIVVDQE 99
                567899***********9888888888777764.4444444444444432233566555555555 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.01
                 EEEEC-TTTCHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlq 18 
                  +++G aGsGK+ L++
  KIR61807.1 486 TVVTGVAGSGKSSLIH 501
                 689**********986 PP

>> UvrA_DNA-bind  UvrA DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.6e-05     0.062       4     105 ..     162     250 ..     160     255 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.6e-05
                    ---.-----------GGG..TT-HHHHHHHHHHHTTTS------------S-THHHHH----...................---HHHHHHHHHH-- CS
  UvrA_DNA-bind   4 lvvpdpslslaegAiapwsskkssyyrqlleavaehygidldtpfkeLpeeqkdilLyGsgeekikveyksggrkrsyektfeGvipnlerryret 99 
                     +v d ++sl++gAi   +   +s+y+q +        +d d+++++++++q + +L+   +         + ++ +++ t+eG++ +++r y ++
     KIR61807.1 162 QLV-DVERSLNDGAITVPNFAVDSWYWQSIV---GSGLFDPDVKLQDFTAQQWQDFLHKPAT---------KMKVGNHTITYEGLAVKVRRLYLSK 244
                    567.99*********************8765...5667******************998886.........4678999999999999999999998 PP

                    -----H CS
  UvrA_DNA-bind 100 eSeavr 105
                    + e ++
     KIR61807.1 245 DKEPTQ 250
                    888765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.021        19      30      53 ..      32      55 ..      12      63 .. 0.88
   2 ?    4.4   0.0     0.026        24      30      49 ..     480     499 ..     457     502 .. 0.87
   3 ?    0.7   0.3      0.36   3.4e+02     163     189 ..     681     707 ..     656     711 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.021
      AAA_25 30 lpagelallaGapgtGKttlaldl 53
                +p+  l++++G +g+GK+ l+   
  KIR61807.1 32 IPKRRLTAFTGVSGSGKSSLVFGT 55
                7999***************98765 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.026
      AAA_25  30 lpagelallaGapgtGKttl 49 
                 +p+g l++++G  g+GK+ l
  KIR61807.1 480 VPLGVLTVVTGVAGSGKSSL 499
                 499***************98 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.36
      AAA_25 163 sdvgalvealeriarrtgaavllvhHv 189
                 +dv++l++ l+r+ ++ +  v++ hH 
  KIR61807.1 681 ADVDKLLALLDRLVDAGNTVVVIEHHQ 707
                 57899999*****99999999999995 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.008       7.5      18      35 ..      34      51 ..      24      53 .. 0.86
   2 ?    4.9   0.0     0.036        34      21      36 ..     485     500 ..     469     502 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.008
      AAA_23 18 skgltlItGpNGaGKTTi 35
                ++ lt++tG  G+GK+++
  KIR61807.1 34 KRRLTAFTGVSGSGKSSL 51
                678**************8 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.036
      AAA_23  21 ltlItGpNGaGKTTil 36 
                 lt++tG  G+GK++++
  KIR61807.1 485 LTVVTGVAGSGKSSLI 500
                 8*************98 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.13   1.2e+02       3      14 ..      40      51 ..      39      61 .. 0.91
   2 ?   -1.0   0.0       2.6   2.5e+03      60     116 ..     385     458 ..     354     461 .. 0.73
   3 ?    5.5   0.0     0.025        24       2      15 ..     487     500 ..     487     525 .. 0.89
   4 ?    0.2   0.0       1.1     1e+03      60      89 ..     705     742 ..     665     752 .. 0.58

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.13
      AAA_18  3 ltGtpGvGKttl 14
                 tG++G+GK++l
  KIR61807.1 40 FTGVSGSGKSSL 51
                69********98 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.6
      AAA_18  60 lldaleenss....aleegknlvidghlaeleseaakdikk.............vvLtaspeelleRlekRgye 116
                 ll  l+   +     +++++++ i +h+++l + a  d+++              +Lt +   ++ Rl++R ++
  KIR61807.1 385 LLLRLRDKGNtvlvVEHKPETIAIADHVVDLGPGAGPDGGRicyagdvaglrraDCLTGRHLDHRARLRERVRT 458
                 44444444446666677888888888888888888888887777777777777778888888888888888755 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.025
      AAA_18   2 lltGtpGvGKttla 15 
                 ++tG++G+GK++l 
  KIR61807.1 487 VVTGVAGSGKSSLI 500
                 59*********986 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1.1
      AAA_18  60 lldaleenss........aleegknlvidghlaelese 89 
                 +++a++++++        a ++g+ +v+ g +a+l+ +
  KIR61807.1 705 HHQAVMAHADwivdlgpgAGHDGGRIVFTGTPADLVAH 742
                 22222333223334444445556666666666666555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.051        48      17      37 ..      34      54 ..      25      67 .. 0.81
   2 ?    7.0   0.3    0.0047       4.4      20      36 ..     485     501 ..     482     505 .. 0.88
   3 ?   -1.4   0.0       1.7   1.6e+03      90     122 ..     667     703 ..     636     737 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.051
      AAA_30 17 gdrvavltGpAGtGKttalka 37
                ++r+++ tG+ G+GK+ ++ +
  KIR61807.1 34 KRRLTAFTGVSGSGKSSLVFG 54
                56799***********98755 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0047
      AAA_30  20 vavltGpAGtGKttalk 36 
                 ++v+tG+AG+GK+ ++ 
  KIR61807.1 485 LTVVTGVAGSGKSSLIH 501
                 789**********9986 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.7
      AAA_30  90 tllivDEag....mvdtkqlaallkaaekagakvilv 122
                 + ++ DE      ++d ++l all+++ +ag +v+++
  KIR61807.1 667 HTYVLDEPTtglhLADVDKLLALLDRLVDAGNTVVVI 703
                 5666666431111357777777777777777777665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.051        48       5      21 ..      35      51 ..      32      62 .. 0.90
   2 ?    5.0   0.3     0.029        28       8      22 ..     486     500 ..     483     509 .. 0.90
   3 ?    1.0   0.0       0.5   4.7e+02      74     133 ..     682     739 ..     653     741 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.051
      AAA_22  5 agilvvtGesGtGKTtl 21
                +++++ tG sG+GK+ l
  KIR61807.1 35 RRLTAFTGVSGSGKSSL 51
                688999*********87 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.029
      AAA_22   8 lvvtGesGtGKTtll 22 
                 +vvtG +G+GK+ l+
  KIR61807.1 486 TVVTGVAGSGKSSLI 500
                 79**********987 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.5
      AAA_22  74 sseellealeqalraravielliiDEaqhlrseealeeLrsllnl.srkgvqliLvGtp.el 133
                 + + ll++l + ++a  +  +++i+  q +  +++  ++++l    +++g ++++ Gtp +l
  KIR61807.1 682 DVDKLLALLDRLVDAGNT--VVVIEHHQAV--MAHADWIVDLGPGaGHDGGRIVFTGTPaDL 739
                 556667777777777777..9999999999..89999997775547799999****999665 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.089        84      12      42 ..     145     155 ..     139     171 .. 0.63
   2 ?   -3.1   0.2       8.4   7.9e+03      13      40 ..     266     273 ..     264     292 .. 0.63
   3 ?    8.2   0.1    0.0025       2.4      32      45 ..     558     571 ..     545     575 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.089
                 E-TTTTTTSEETTE......E-TTTTTSSEE CS
   Anti-TRAP  12 kCdaCngsGkiepeeprasleCPkCsGkgli 42 
                  C++C+g G+                    +
  KIR61807.1 145 MCPTCEGLGR--------------------V 155
                 4555555554....................4 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.4
                 -TTTTTTSEETTE......E-TTTTTSS CS
   Anti-TRAP  13 CdaCngsGkiepeeprasleCPkCsGkg 40 
                 C                      C G  
  KIR61807.1 266 CGD--------------------CAGTR 273
                 455....................55544 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0025
                 E-TTTTTSSEEE-H CS
   Anti-TRAP  32 eCPkCsGkglipTa 45 
                  CPkC G g++ T+
  KIR61807.1 558 ACPKCRGIGVVYTD 571
                 6*********9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 4854.54
//
Query:       KIR61808.1  [L=412]
Description: D-Ala-D-Ala carboxypeptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-38  130.4   0.0    9.9e-38  129.9   0.0    1.1  1  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase
    3.6e-09   36.5   0.0    5.1e-09   36.0   0.0    1.3  1  Beta-lactamase2  Beta-lactamase enzyme family
  ------ inclusion threshold ------
      0.038   12.7   0.1        0.1   11.3   0.0    1.6  2  Peptidase_S13    D-Ala-D-Ala carboxypeptidase 3 (S13) family


Domain annotation for each model (and alignments):
>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.0   1.6e-41   9.9e-38       5     240 ..      83     315 ..      80     316 .. 0.93

  Alignments for each domain:
  == domain 1  score: 129.9 bits;  conditional E-value: 1.6e-41
                    S---.--SSSEEEEEETTTTEEEEEESTTS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEEE--GGGHGCCSGTTSSTTS-TTT-EEEHHHHHHHH CS
  Peptidase_S11   5 asepleiaaksailvdantGkvLyeknadevveiASltKlmTaylvlealkkgklkeddkvtisedayalgnnkevsniflkkgskvsvkdLlegl 100
                    +++p +++a s+++ d++tG vL    ++e   +AS+ Kl+   l   al   kl+ +  vt+ ++        ++s++ l +g +++v+ +  gl
     KIR61808.1  83 PKPP-AVTATSWLVADLDTGAVLGGCGPHEYATPASVQKLL---LTATAL--PKLDPKRVVTVTHEDLDIA--PGSSAVGLLEGGRYTVETVFLGL 170
                    5566.9*********************************97...455666..899********99988887..89********************* PP

                    HCC--HHHHHHHHHHHHS..SHHHHHHHHHHHHHHTT-TT-B-SSSSSTSHTTCBB-HHHHHHHHHHHHHH.HHHHHHGGGESEEEETT...ECTE CS
  Peptidase_S11 101 lvssgNdAavalAekiaG..sekaFvkmMnkkakelGlkntkfvnptGLdnenqvssArdlailakallkd.lpeelkitkeksltfng...ikkl 190
                    l++sgN+Aa  lA  i+G  +    v++Mn+ a++lG   t+ v+p GLd ++q+ sA+dla++a+a   d +   +++t++  +  ++   +k +
     KIR61808.1 171 LLQSGNEAANVLARLIGGpdGAAGGVQAMNAEARHLGALQTHAVTPSGLDGPGQFTSAYDLALIARACFADpTFRRYALTEQARIPDQPalrQKGF 266
                    ******************5556778*********************************************************999999778899** PP

                    EEESSTGGGGTTTSEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEES CS
  Peptidase_S11 191 nyknknkllyrktlnvdglktGytkkAgeclvatavenqmrlisVvlnak 240
                    + +n+n+l+yr+     g ktG+t+ A ++ v+ a++++ rl+   l+a+
     KIR61808.1 267 QIQNENQLIYRYP-GALGGKTGFTDYARHTYVGAAQRGGRRLVVTLLGAE 315
                    ************9.999**************************9999985 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   8.5e-13   5.1e-09       1     201 [.      98     310 ..      98     311 .. 0.74

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 8.5e-13
                      TTTTSEE.EESTTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEEGGHHH..HTSSSTSGGGSTTSEEEHHHHHHHHHHTT-HHHHHHHHHHH CS
  Beta-lactamase2   1 ldtgeel.gvnadeefpaaStiKvpillalleavlegklslderltltaed..ivggsgilqklpgktlslrdlltlmiavSDNtAtnlLidrl 91 
                      ldtg++l g +++e    aS+ K+++     + +l  kl+++  +t+t ed  i++gs +   l+g++++++++    + +S N A+n+L +++
       KIR61808.1  98 LDTGAVLgGCGPHEYATPASVQKLLLT----ATAL-PKLDPKRVVTVTHEDldIAPGSSAVGLLEGGRYTVETVFLGLLLQSGNEAANVLARLI 186
                      7899999889****************9....4333.7999********8886688*************************************** PP

                      ........THHHHHHHHHHCTHTTSB--SHTTCCHHHTTSSTTEE-HHHHHHHHHHHHHTTSSHHH...HHHHH........HHT-STTTTTTT CS
  Beta-lactamase2  92 ........gleavnawlkelglretrlrrklpdleaadkdkrntttardlarllealargellspe...ellei........lsnqqfrdrlaa 166
                              g++a+na ++ lg  +t+  ++  +     +++   t+a dla + +a + +    +    e            l++  f+ + + 
       KIR61808.1 187 ggpdgaagGVQAMNAEARHLGALQTHAVTPS-G----LDGPGQFTSAYDLALIARACFADPTFRRYaltE---QaripdqpaLRQKGFQIQNEN 272
                      7777666447777777777777777766542.2....356888999999999999999987777753221...123345555554333333333 PP

                      TTT..TTSEEEEEEEEETTEEEE.EEEEEETTEEEEEE CS
  Beta-lactamase2 167 glp..egvrvahKtGeldgvrhd.vGivyadgrpyvva 201
                      +l       +  KtG  d +rh  vG  + +gr+ vv+
       KIR61808.1 273 QLIyrYPGALGGKTGFTDYARHTyVGAAQRGGRRLVVT 310
                      33333345788899987666666588888888888875 PP

>> Peptidase_S13  D-Ala-D-Ala carboxypeptidase 3 (S13) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.7e-05       0.1      21      62 ..      93     134 ..      80     142 .. 0.86
   2 ?   -2.4   0.0      0.24   1.5e+03     282     316 ..     171     201 ..     163     214 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.7e-05
                    EEEEETTTTEEEEEESTTSEB--GGGHHHHHHHHHHHHT-TT CS
  Peptidase_S13  21 vvvqdaetgkelydhqgdtpllPAStqKllTAaaAlltLgan 62 
                     +v d++tg++l      + + PAS qKll +a+Al +L++ 
     KIR61808.1  93 WLVADLDTGAVLGGCGPHEYATPASVQKLLLTATALPKLDPK 134
                    45999**********************************986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.24
                    HHHT-HHHHHHHHHHHHHHHCS-BSHHHHHHHHHH CS
  Peptidase_S13 282 mkkSdNliAesllrevakeikrpgsfeagldavre 316
                    + +S N  A++l r ++    +p   ++g++a++ 
     KIR61808.1 171 LLQSGNEAANVLARLIG----GPDGAAGGVQAMNA 201
                    56788889999988888....55555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2721.05
//
Query:       KIR61809.1  [L=398]
Description: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-08   33.6   0.9    9.1e-08   32.6   0.4    1.7  2  Glyco_trans_1_4  Glycosyl transferases group 1
    2.3e-07   31.1   0.0    4.1e-07   30.3   0.0    1.5  1  MGDG_synth       Monogalactosyldiacylglycerol (MGDG) synthase
    1.9e-05   24.7   0.0    2.7e-05   24.2   0.0    1.2  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
    0.00022   20.8   0.0    0.00048   19.7   0.0    1.6  2  Glycos_transf_1  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.017   14.0   0.0      0.025   13.5   0.0    1.2  1  Epimerase_2      UDP-N-acetylglucosamine 2-epimerase
       0.13   12.3   0.0        0.2   11.7   0.0    1.3  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         3   9.1e+03      97     106 ..      10      20 ..       3      47 .. 0.55
   2 !   32.6   0.4   3.1e-11   9.1e-08      24     131 ..     223     331 ..     219     334 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3
                      EEE-.TGG.GTT CS
  Glyco_trans_1_4  97 vVat.dvg.gia 106
                      vV++ dvg g  
       KIR61809.1  10 VVVSaDVGaG-H 20 
                      4444366422.2 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 3.1e-11
                      H.HHHH.HH.EEEEEES---..HHHHHHHTT-T.TEEEE---THHHHHHHH-SEEEE-----SHHHHHHHHTT-EEEE-.TGGG...TTT--.T CS
  Glyco_trans_1_4  24 v.pllrkkd.vrlvivGdgprpeeleelaagleerveftGfvedlaellaaadvfvaPsegfglkllEamaaglpvVat.dvgg...iaevv.g 110
                        + ++++d vr v+v  g r++ l+++++gl+   +++G+v+d++ l++a+dv+v      gl+  Ea+++g+pv++  +++g   ++++v  
       KIR61809.1 223 TvADVAAADgVRTVVVC-G-RNATLRQRLRGLT--PHVLGWVDDMPTLMRAVDVVVENAG--GLTCQEALSCGVPVITYrPLPGhgrANATVlA 310
                      44677777677766666.4.5569*99999985..899*****************98774..8***************9445552222223344 PP

                      TSSEE--TT-HHHHHHHHHHH CS
  Glyco_trans_1_4 111 engllvppgdpealaeailrL 131
                       +gl   + ++e+l +a+++L
       KIR61809.1 311 AAGLTHWAPSAEQLRRAVAAL 331
                      445433222567777666666 PP

>> MGDG_synth  Monogalactosyldiacylglycerol (MGDG) synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.4e-10   4.1e-07      93     143 ..     109     156 ..      20     165 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.4e-10
                 EEE-STTTTHHHHHHHHTTT-TTTSEEEEE---SSS--GGG--TT-SEEEE CS
  MGDG_synth  93 iisthplvaelplsvLkskellkrvlvvtvvtDfellhktWlrkeidryyv 143
                 +++t+p++ +l l  L+  +ll +v++vt vtDf ++h+tW+ +++d y +
  KIR61809.1 109 VVTTYPFANQL-LGPLRRSGLL-PVPLVTYVTDF-VVHPTWVAPGVDIYCT 156
                 89*****9999.9999999988.79999******.89**********9865 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   9.1e-09   2.7e-05      45     121 ..     244     315 ..     207     337 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 9.1e-09
                      --STT-TTTTCEEEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHHTT--EEEE.--TT....S-HHHHHHHHHHHHH CS
  Glyco_tran_28_C  45 evkikveeltlkvevfefidkmaeaikaadLvIsRAGagtiaEllalgkplIlv.plpeaaenhqdnNakelekagaa 121
                       +++ + +lt   +v+  +d+m  +++a d+v+  AG  t+ E+l+ g+p I+  plp     h + Na  l+ ag +
       KIR61809.1 244 TLRQRLRGLT--PHVLGWVDDMPTLMRAVDVVVENAGGLTCQEALSCGVPVITYrPLPG----HGRANATVLAAAGLT 315
                      3444445554..6899************************************7548888....999999999998865 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.7     5e+03     111     125 ..       2      17 ..       1      32 [. 0.78
   2 !   19.7   0.0   1.6e-07   0.00048      76     127 ..     255     301 ..     196     338 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.7
                      HHHHTT--EEEET.TT CS
  Glycos_transf_1 111 EAmaaglpviasn.ag 125
                      +A   g++v++s+ +g
       KIR61809.1   2 NAQHRGTIVVVSAdVG 17 
                      6788899999998554 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 1.6e-07
                      GEEECCHSSSHHHHHHCESEEEEEESSBSS-HHHHHHHHTT--EEEET.TTTH CS
  Glycos_transf_1  76 iflgevsredleellknadifvlpsisEgfGivllEAmaaglpviasn.aggp 127
                      ++lg v+  d+++l+++ d++v +    + G+++ EA+++g+pvi++   +g 
       KIR61809.1 255 HVLGWVD--DMPTLMRAVDVVVEN----AGGLTCQEALSCGVPVITYRpLPGH 301
                      7889998..**************9....9*****************9866654 PP

>> Epimerase_2  UDP-N-acetylglucosamine 2-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.3e-06     0.025     250     286 ..     260     297 ..     217     339 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.3e-06
                  HHHHHHHHHC-SEEEES-HHHH.HHHHHCT--EEESSS CS
  Epimerase_2 250 yldflsllknaklvltdSgGiq.eEapslgvpvvnlRe 286
                  + d+  l++++++v+ + gG+  +Ea s gvpv++ R 
   KIR61809.1 260 VDDMPTLMRAVDVVVENAGGLTcQEALSCGVPVITYRP 297
                  468999*************98546***********984 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.8e-05       0.2      18      81 ..     211     275 ..     193     281 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.8e-05
                   E....S-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE CS
  Shikimate_DH  18 i....GaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvis 81 
                   +    G+G +   va   +a gv+ vvv +R+ +  ++l+    ++      ++++ +l++++dvv+ 
    KIR61809.1 211 VagawGTGDIEATVADVAAADGVRTVVVCGRNATLRQRLRGLTPHV---LGWVDDMPTLMRAVDVVVE 275
                   3444488999999**************************9999777...9999************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2659.11
//
Query:       KIR61810.1  [L=296]
Description: hypothetical protein TK50_30385 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.004   17.3  16.9       0.58   10.3   0.2    4.4  4  EamA      EamA-like transporter family
  ------ inclusion threshold ------
        1.4    9.3   7.4        1.5    9.2   1.5    3.4  4  Romo1     Reactive mitochondrial oxygen species modulator 1
        5.2    7.1   6.8       0.95    9.4   1.1    2.6  2  DUF4389   Domain of unknown function (DUF4389)
          8    6.9   6.5          2    8.8   1.6    2.5  2  DUF1056   Protein of unknown function (DUF1056)


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0086        39       3      26 ..       4      27 ..       2      44 .. 0.82
   2 !   10.3   0.2   0.00013      0.58      76     135 ..      57     116 ..      50     118 .. 0.93
   3 ?    1.1   0.3     0.095   4.2e+02       2      28 ..     160     186 ..     159     195 .. 0.86
   4 !    8.1   3.4   0.00063       2.8      94     136 ..     226     268 ..     198     272 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0086
        EamA  3 gillallaalfwaiyfvlskillr 26
                ++  al aa+++a+++++ +++ +
  KIR61810.1  4 AVACALGAAFCFAVSTTMHQRAAK 27
                57789************9988754 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00013
        EamA  76 vlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 v++ +l+  al+ ++ + + ++++    +++++ + + + + + ++llg+ ++l+G++  
  KIR61810.1  57 VAGVGLQAVALRFGPLALVQPLMASGLFMAILIEAGWNRRRAGARDLLGATVGLVGLAAF 116
                 5778999*************************************************9865 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.095
        EamA   2 lgillallaalfwaiyfvlskillrkv 28 
                 +g+ll ++a  ++++++ l k+l   +
  KIR61810.1 160 RGALLGFAAGTLYGVAAALVKALTGGF 186
                 6999**************999987655 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.00063
        EamA  94 aslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                  + +t+  Pv++++l+v  ++e++tl     +vl+l+ v++++
  KIR61810.1 226 LTALTLADPVVSVVLGVTAFRETITLGGPRVAVLALAVVAIVV 268
                 56788999******************99999999999888875 PP

>> Romo1  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.17   7.7e+02      11      33 ..       4      26 ..       1      32 [. 0.71
   2 ?   -2.8   0.1       1.9   8.6e+03      55      60 ..      82      87 ..      66      87 .. 0.81
   3 ?   -0.5   0.0      0.38   1.7e+03      11      21 ..     103     113 ..      94     129 .. 0.73
   4 ?    9.2   1.5   0.00034       1.5       6      31 ..     154     179 ..     150     190 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.17
       Romo1 11 lmGaaVGlaiGllfGtfsalryg 33
                ++ +a+G+a+++ + t++  r+ 
  KIR61810.1  4 AVACALGAAFCFAVSTTMHQRAA 26
                56678999999998888876665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.9
       Romo1 55 GfFmsi 60
                G+Fm+i
  KIR61810.1 82 GLFMAI 87
                889987 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.38
       Romo1  11 lmGaaVGlaiG 21 
                 l+Ga+VGl+  
  KIR61810.1 103 LLGATVGLVGL 113
                 57888887644 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00034
       Romo1   6 ikmGalmGaaVGlaiGllfGtfsalr 31 
                 + +Ga+ Ga++G a+G+l+G+++al 
  KIR61810.1 154 LVTGAARGALLGFAAGTLYGVAAALV 179
                 66799999999999999999998875 PP

>> DUF4389  Domain of unknown function (DUF4389)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.1   0.00021      0.95      18      53 ..     135     170 ..     130     176 .. 0.90
   2 ?   -1.1   0.5       0.4   1.8e+03      22      35 ..     258     271 ..     255     280 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00021
     DUF4389  18 lslaslvlwvvvvvqflivLvtgrpnepLrdfgksl 53 
                 + +a  v +vv+v   l++Lvtg+   +L++f+++ 
  KIR61810.1 135 WRVALGVGGVVAVALALSALVTGAARGALLGFAAGT 170
                 778889999***********************9986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.4
     DUF4389  22 slvlwvvvvvqfli 35 
                  l+l+vv++v+ ++
  KIR61810.1 258 VLALAVVAIVVGVW 271
                 34444444444333 PP

>> DUF1056  Protein of unknown function (DUF1056)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.72   3.2e+03      23      38 ..     146     161 ..     135     182 .. 0.67
   2 ?    8.8   1.6   0.00044         2      23      51 ..     237     271 ..     234     277 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.72
     DUF1056  23 mivltytaFlfnataG 38 
                 +++l  +a + +a+ G
  KIR61810.1 146 AVALALSALVTGAARG 161
                 3444444555555554 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00044
     DUF1056  23 mivltytaFlfnataG.....vlvisvvlflvG.l 51 
                  +vl +taF+  +t+G     vl+++vv ++vG +
  KIR61810.1 237 SVVLGVTAFRETITLGgprvaVLALAVVAIVVGvW 271
                 58999**********95555559999999999944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1855.46
//
Query:       KIR61811.1  [L=248]
Description: peptidylprolyl isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-25   89.8   0.0      3e-25   89.3   0.0    1.1  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.0   1.7e-29     3e-25       2     140 ..      77     224 ..      76     245 .. 0.81

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 1.7e-29
  Pro_isomerase   2 vdietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikg...fmvqgGdptgktsageqe.kkgge..siraipdEit.sklkhkrGa 90 
                    v+++t+ +G+i + L+ ++aP tv+ Fl+l++ +fYd t  hR+       ++q Gdp+g+++ g++  ++++      ++p + t  +    rG+
     KIR61811.1  77 VTLRTK-HGPIGLTLDREQAPCTVQSFLHLARHRFYDRTPCHRLTAYptlSVLQCGDPSGTGEGGPGYrYADELptDLPPAPTDPTgARRVYARGL 171
                    789996.************************************8544446899********9966655455555433478888988778888**** PP

  Pro_isomerase  91 lamartgkepnsagsqFfItlkeaphldgkytvFGkVv.eGmdvvekiek.....v 140
                    lama++g  p+++gsqFf++ ++ + l  +ytvFG+V   G++++++i++     +
     KIR61811.1 172 LAMANAG--PDTNGSQFFLVYAD-SALRPNYTVFGEVDaAGLATLDRIAAggiapT 224
                    *****98..8***********95.567778*******99**********9544331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1901.80
//
Query:       KIR61812.1  [L=263]
Description: esterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-27   95.7   0.0    5.3e-27   95.1   0.0    1.3  1  Esterase       Putative esterase
      6e-05   22.4   0.0     0.0001   21.6   0.0    1.4  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0043   16.9   0.1     0.0097   15.8   0.1    1.5  1  Abhydrolase_3  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.013   15.0   1.2       0.24   10.9   0.9    2.4  1  Esterase_phd   Esterase PHB depolymerase
      0.015   14.8   0.2      0.026   14.0   0.0    1.5  2  Peptidase_S9   Prolyl oligopeptidase family
       0.02   14.7   0.0       0.47   10.2   0.0    2.0  2  Abhydrolase_2  Phospholipase/Carboxylesterase
        0.1   12.2   0.0       0.25   10.9   0.0    1.6  2  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.0   2.1e-30   5.3e-27       9     250 ..      18     252 ..      10     253 .. 0.81

  Alignments for each domain:
  == domain 1  score: 95.1 bits;  conditional E-value: 2.1e-30
                 EEEEEE.CC..........GGTTTEEEEEEE--T....THHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSBB.TTEEETTCCCCCCH CS
    Esterase   9 kvqvyLPedy.........spgrkypvvylldGl....tgwdqnfrakelleslaregeiaeviivvvprggessfysdwdlgarfyenategpgaeay 94 
                  + v+LP+           +p++ +pv+yll+Gl    t w++ +++++++  l+          vv+p+ g+s fy             t ++   +y
  KIR61812.1  18 SMTVLLPDPAgagiglaggAPAGDPPVLYLLHGLsdddTIWTRRTSVERYVAPLGLA--------VVMPQVGRS-FY-------------TDEENGNRY 94 
                 4444444444446677777999************99999999999999999777777........*********.33.............33444578* PP

                 CHHHHTHHHHHHHHHCSEECCC..EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CC...........HCHHHC.....TTCCHHHCC-CCCCHC CS
    Esterase  95 etfltqeLlplldanfrtapdg..ravaGqSmGGlgALilalkhpdrFgsvssfSpivnps...........namWgq.....eekeawqendpvllak 175
                 +tfl++eL+ + ++ fr ++++  + vaG SmGG+gA+  al+ p+rF+ ++s+S+ +n             +  W +     +       +d+v+l +
  KIR61812.1  95 WTFLSEELPEVCRSFFRLSDRRedTFVAGLSMGGYGAVKWALREPGRFAAAASLSGALNVAhrqhhpahpmdPTVWHTvfgdrAVP--GSDDDTVALLE 191
                 *******************************************************************9999988888877654222..24778888887 PP

                 HHCHTTSEEEEEEEECTTBCCCHTSCHHHHHHHHHHHCCHHHHCCCCCCTT-SCCCC--SSHHHHHHHHHHCHHH CS
    Esterase 176 elsaslkalriyldvGtseddlgeqlsveilevlarnrelkeqlaargvegedheydGghsweyWraqLiaalad 250
                 ++ ++l+al ++   Gt++              + +n+++ e  + rgv+  ++  +G+h+w+yW a++ + la+
  KIR61812.1 192 RAGDDLPALYVA--CGTEDF------------LFDDNTRFVETARRRGVPLTVDFSPGDHDWAYWDAKIQDVLAW 252
                 777777776555..588885............567888899999999********************99887766 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   4.1e-08    0.0001      73     117 ..     114     158 ..      95     182 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 4.1e-08
  Hydrolase_4  73 hpelplfllGhSmGGliallyllrypdkvaglilsaPalkikakl 117
                   +++  f+ G SmGG+ a++++lr+p ++a++   + al+++++ 
   KIR61812.1 114 DRREDTFVAGLSMGGYGAVKWALREPGRFAAAASLSGALNVAHRQ 158
                  566789************************999999999988765 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   3.8e-06    0.0097      73     204 ..     119     235 ..     109     240 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.8e-06
                    EEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGCS-SST--- CS
  Abhydrolase_3  73 ivlaGdSaGGnlaaavalrardegepkvagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlylpeadrddplaspllaedlsglpp 168
                     ++aG S GG  a   alr   +     a+ + ++ ++++ ++   +++ a +  d    ++ +   f +  +p+   dd +++ l +   ++lp 
     KIR61812.1 119 TFVAGLSMGGYGAVKWALREPGR----FAAAASLSGALNV-AH--RQHHPA-HPMD----PTVWHTVFGDRAVPG--SDDDTVALLER-AGDDLPA 199
                    67777777777666666555544....6777777776644.22..222111.1222....222344555666654..45556665544.67889** PP

                    EEEEEETT-TTHHHHHHHHHHHHHTT--EEEEEETT CS
  Abhydrolase_3 169 tlvvvaefDplrdegeayaerlraagvevelieyeg 204
                     +v+++++D l d++ ++ e  r  gv+ ++   +g
     KIR61812.1 200 LYVACGTEDFLFDDNTRFVETARRRGVPLTVDFSPG 235
                    ****************************99987665 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.9   9.4e-05      0.24      10     131 ..      36     151 ..      25     208 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.4e-05
  Esterase_phd  10 GarrgamplvvmlhGctqsveefaaGtrmnlladklGvvvlypeqslranaqkcwnwykdtdraGrGeaavvvalvdalvdehrvdaar..vyvaGl 104
                   Ga+ g  p++ +lhG   +   +++ t ++     lG++v+ p+   r        +y d+++  r  +     l +   +  r+   r   +vaGl
    KIR61812.1  36 GAPAGDPPVLYLLHGLSDDDTIWTRRTSVERYVAPLGLAVVMPQVG-R-------SFYTDEENGNRYWTFLSEELPEVCRSFFRLSDRRedTFVAGL 124
                   6666666666666666666666666666666666666666666432.2.......24444444444444444444444444444444332369**** PP

  Esterase_phd 105 saGaaladllalhypdvfaavalhsGl 131
                   s G+  a   al  p +faa a  sG 
    KIR61812.1 125 SMGGYGAVKWALREPGRFAAAASLSGA 151
                   *********************999985 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         2   5.2e+03     146     157 ..      45      56 ..      41      60 .. 0.75
   2 ?   14.0   0.0     1e-05     0.026      64     175 ..     117     227 ..     113     253 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2
                   EEEEEETT-SSS CS
  Peptidase_S9 146 lLlihGlaDdrv 157
                   l l+hGl Dd +
    KIR61812.1  45 LYLLHGLSDDDT 56 
                   4589*****986 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1e-05
                   GGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTS...THHHCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS CS
  Peptidase_S9  64 erlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdl...lteeymewgnpeeneegykelspyspldnvkaypplLlihGlaDdrv 157
                   e  ++ G S GGy +   + ++p +F+aa++  + ++v +   ++ +    t +++ +g+      + ++++ ++ +      p+l + +G++D   
    KIR61812.1 117 EDTFVAGLSMGGYGAVKWALREPGRFAAAASLSGALNVAHRQHHPAHpmdPTVWHTVFGDRAVPGSDDDTVALLERAGD--DLPALYVACGTEDF-- 209
                   66789********88777777****************998888877775555577777776556665666666666666..66666666666665.. PP

                   -THHHHHHHHHHH--S-S CS
  Peptidase_S9 158 ppaealklvaaLqkkgkn 175
                    +   +++v++ +++g++
    KIR61812.1 210 LFDDNTRFVETARRRGVP 227
                   335555555555555555 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.04     1e+02      15      61 ..      43      92 ..      39     108 .. 0.68
   2 ?   10.2   0.0   0.00018      0.47     103     145 ..     115     157 ..      98     177 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.04
                   EEEEEE--TT--SHHHHHHHH.T..T--TTEEEEEE---E.EE-GGGTT- CS
  Abhydrolase_2 15 avviflHGlGdsghawaeaakte..aalpnikfifphgpe.lpvtlnggm 61
                   +v+ +lHGl d+   w   +++e  +a    + ++p+  +  + + ++g 
     KIR61812.1 43 PVLYLLHGLSDDDTIWTRRTSVEryVAPLGLAVVMPQVGRsFYTDEENGN 92
                   57889********9998877754224555566666654442444444554 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00018
                    -GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGG CS
  Abhydrolase_2 103 pssriiigGFSqGaalalylaltlpkklggivafsgalplsqk 145
                     ++++++ G S+G+  a++ al +p + + + ++sgal  +  
     KIR61812.1 115 RREDTFVAGLSMGGYGAVKWALREPGRFAAAASLSGALNVAHR 157
                    6789*********************************976544 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.5   3.8e+03       1      17 [.      43      59 ..      43      67 .. 0.78
   2 ?   10.9   0.0   9.8e-05      0.25      77     111 ..     121     163 ..     100     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.5
                   SEEEEE-STTTCGGGGT CS
  Abhydrolase_1  1 pvlvilhGlpgssdvwa 17
                   pvl +lhGl +   +w 
     KIR61812.1 43 PVLYLLHGLSDDDTIWT 59
                   7999****988666665 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 9.8e-05
                    EEEETHHHHHHHHHHHHHGGGEEEEEEESE........CSSCC CS
  Abhydrolase_1  77 lvGhSmGGmialayaaeyperVkalvllga........idpaa 111
                    + G SmGG  a  +a++ p r +a ++l++        ++pa+
     KIR61812.1 121 VAGLSMGGYGAVKWALREPGRFAAAASLSGalnvahrqHHPAH 163
                    7799*************************97666655555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1909.13
//
Query:       KIR61813.1  [L=132]
Description: ankyrin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 907.77
//
Query:       KIR61814.1  [L=399]
Description: Fis family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.4e-126  420.7   0.0   1.4e-125  419.7   0.0    1.4  1  RtcB      tRNA-splicing ligase RtcB


Domain annotation for each model (and alignments):
>> RtcB  tRNA-splicing ligase RtcB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  419.7   0.0    8e-130  1.4e-125       1     412 []      29     399 .]      29     399 .] 0.93

  Alignments for each domain:
  == domain 1  score: 419.7 bits;  conditional E-value: 8e-130
                 HHHHHTTSTTB-S-EEEEEEEE--SSS-EEEEEEE--EE-HHHC-SST.-EEEEEEEEEEHHHHGGGHHHHHHHHHHHS-------.------HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
        RtcB   1 qlknvaslpgivkhvaamPDvHlGkgapiGsViatkgviiPaaVGvDI.CGvrllktnltaeeleeklkelvkelekavpvglgsk.kkvklskkelee 97 
                 ql+n+  lp++   va+mPDvH+Gkga++GsVia++++++PaaVGvDI CG+++++t+lta +l + l  l++++e+a+pvg+ ++ + v+        
  KIR61814.1  29 QLRNIGALPWVEG-VAVMPDVHFGKGATVGSVIAMRQAVSPAAVGVDIgCGMSAVRTSLTAADLPDDLAGLRSAIEAAIPVGFARHdDPVD--P----- 119
                 8999******765.9*************************************************999****************74423333..2..... PP

                 HHHHTHHHHHHTTSS-GGGGGGBGGGG--TT--GGGS-HHHHHHHGGGTT---STT-EEEEEEEEEES-HHHHHHHT--TTEEEEEEEE--HHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        RtcB  98 vleegakwaveeglgeeedlekieeegalkeadlekvskkakerarkqlGtlGsGNHFiEvqlveeildeeaakalgleegqvvvmlHsGSRglGhqia 196
                    + ++   ++g++++            + a+l++ +  ++ rar+qlGtlG+GNHFiEv+l             g + g+v++mlHsGSR++G+++a
  KIR61814.1 120 ---RRVRGLEQRGWADFWA----------RFATLDERVAPLEGRARQQLGTLGGGNHFIEVCLE----------SGGPDAGRVWLMLHSGSRNIGKELA 195
                 ...2333334456655552..........445677778889***********************..........7889********************* PP

                 HHHHHHHHCCHHHCT---SSGGG--EETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T--HHHH--EEEEEEESEEEEEEEE.TEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        RtcB 197 edylkiakkalkkkgiklpdrdLaylpagseegqaYlkamqaaanyAkaNRqvitervreilekvlkkekedlelelvvdvaHNiakkEehedekvlVh 295
                 e+++ ia+ +l  +++ lpdrdLa++ ag++e++aY +++ +a++yA+ NR+++ +++  ++++ ++    +++++  + ++HN++++E++ + +vlV+
  KIR61814.1 196 ERHMGIAR-RLP-HNAGLPDRDLAVFLAGTPEMAAYRRDLWWAQEYARRNRALMLALLCGVVRDAVG----HVGFDEPISCHHNYVAEETYGGVDVLVT 288
                 ********.787.889*************************************************96....578999**************9******* PP

                 EES-EE-TT--EEEE--STTS-EEEEE--HHHHSSSEE---S-----------------TTTTTCCCT-EEEE------------------HHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        RtcB 296 RKGAtrAkvgqpviipGsmgtkSyivkGkgnaesfgStsHGAGRlmsRakakkkfkleevkkdleeqgigvearkkegvleEapeaYKdideVveaqae 394
                 RKGA+rA +g+++iipGsmgt+Syiv+Gkgn ++++S+sHGAGR+msR +ak++++++    dl++q++gve+rk++gv++E+p+aYKdi +V+++q+ 
  KIR61814.1 289 RKGAIRAGAGDLGIIPGSMGTGSYIVRGKGNPDAYCSASHGAGRRMSRGQAKRTYSTA----DLAAQTAGVECRKDAGVVDEIPAAYKDITQVMAQQE- 382
                 **********************************************************....************************************. PP

                 CTS-EEEEEEEEEEEEE- CS
                 xxxxxxxxxxxxxxxxxx RF
        RtcB 395 aglvevvarlkpvlvvkg 412
                  +lvevva+l++v++vkg
  KIR61814.1 383 -DLVEVVAHLRQVVCVKG 399
                 .****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2874.28
//
Query:       KIR61815.1  [L=162]
Description: single-stranded DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-57  191.2   0.0    8.7e-57  191.0   0.0    1.0  1  SmpB      SmpB protein


Domain annotation for each model (and alignments):
>> SmpB  SmpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.0   0.0   4.8e-61   8.7e-57       1     142 [.      10     150 ..      10     152 .. 0.98

  Alignments for each domain:
  == domain 1  score: 191.0 bits;  conditional E-value: 4.8e-61
                 EEE-CHHHTTSEEEEEEEEEB---HHHHHHHHH--EESSSEEEEEESSCEEEEESEE---S--SS----TT--EEBB--HHHHHHHHHHHHHHT-EEEE CS
        SmpB   1 iakNkkarhdYeieetyeaGivLkGtEvkslragkvnlkdsyvkikngelfllnvhiseyekgnifnhdpkrkrkLLlhkkeikklagkveekgltlvp 99 
                 +a+NkkarhdY+i++tyeaG+vL GtEvkslrag v+l d++++ ++gel+l+++hi+ey  g+++nh+p+r+rkLLl++ ei+++ ++v+e gltlvp
  KIR61815.1  10 VASNKKARHDYDILKTYEAGLVLAGTEVKSLRAGYVSLVDAFAQEHDGELMLHGLHIAEYGFGSWTNHQPRRTRKLLLRRIEIDRILDRVREGGLTLVP 108
                 589************************************************************************************************ PP

                 EEEEE.ESSEEEEEEEEEEC--SS--XXXXXXXXXXXXXXXXX CS
        SmpB 100 lklyfkkkglvKveialakgkklydkretlkerdakreieral 142
                 l+lyf ++g++Kve++la+g+++ydkr++l+erdakrei+r+l
  KIR61815.1 109 LSLYF-SNGWAKVELGLARGRRSYDKRQALAERDAKREIAREL 150
                 *****.88********************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1233.75
//
Query:       KIR61816.1  [L=181]
Description: phosphotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-38  130.3   0.0    8.9e-38  130.1   0.0    1.0  1  PTS_2-RNA  RNA 2'-phosphotransferase, Tpt1 / KptA family


Domain annotation for each model (and alignments):
>> PTS_2-RNA  RNA 2'-phosphotransferase, Tpt1 / KptA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.1   0.0     5e-42   8.9e-38       3     180 ..       6     170 ..       4     171 .. 0.87

  Alignments for each domain:
  == domain 1  score: 130.1 bits;  conditional E-value: 5e-42
   PTS_2-RNA   3 evqlskaLsyiLRhgaekegLkiredGyvkvedlLelpklkslkvtleeikevVesndKqRFelv.elee.lliranqghsikkvesselllepiesae 99 
                  v+lsk++s+ LRh++ + gL+ +  G+v v+dlL+     +l+v  +++ +vV+ ndKqRF++   +++   iranqghsi      el l  +   e
  KIR61816.1   6 MVKLSKRMSKALRHEPYRLGLTPDGAGWVPVDDLLA-----ALRVGRPDLDAVVAGNDKQRFAVErGPDGvERIRANQGHSIP----VELGLPTV---E 92 
                 589*********************************.....344788****************887778889*********73....24445544...4 PP

   PTS_2-RNA 100 elpevvvHgTylkawesilasggLkrmsrnhihlatglpgekevisgmrksae.vliyidvekaladgikfyvsengviLte 180
                 + p +++HgT+++ ++si+  +gL+r +r+h+hl+++++  ++  +g r+    v++++d++++++dg +f +s+ngv+Lt+
  KIR61816.1  93 P-PPLLYHGTAAAVLDSIR-ATGLHRGGRHHVHLSADVE--TARRVGARRGGPvVVLTVDAAAMARDGHAFHRSANGVWLTD 170
                 3.778**************.88**************986..45778888855538899**********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1407.71
//
Query:       KIR61817.1  [L=137]
Description: hypothetical protein TK50_30435 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.017   14.9   0.6      0.042   13.6   0.6    1.9  1  PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin 
      0.078   13.2   1.9      0.094   13.0   1.9    1.0  1  Hydrolase        haloacid dehalogenase-like hydrolase
        1.1    9.6  10.0        4.6    7.7  10.0    1.9  1  V-ATPase_G_2     Vacuolar (H+)-ATPase G subunit


Domain annotation for each model (and alignments):
>> PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.6   7.1e-06     0.042       3      52 ..      15      66 ..      13     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.1e-06
                     EEEHHHHHHTHHHHHHHHHHHT-EEEEEETTEE..EEEEEEHHHHHHHHH.H CS
  PhdYeFM_antitox  3 ivsiseakanlselldeveegeepviItrrGkp..vaVlvsleeyerlqelt 52
                     + s++e +++l +l+  +e +++  ++tr G p   a +v+++  ++   ++
       KIR61817.1 15 ALSLRETRTRLTQLVAMAELTDTVTLVTRDGDPrpIAAIVPASAARSAAQAR 66
                     6799***************************87779*****98777665544 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.9   1.6e-05     0.094      17     134 ..      23     131 ..      18     135 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHCHHHHHHHHHH..HHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  17 psvedvivsaalalaaaletg..sehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtvallqaralavfti 113
                  +++++++ a+l   + l t    ++pi++ + a a     +    a      ++a     w ++l    +   + +s   +++  a+   +ala++++
  KIR61817.1  23 TRLTQLVAMAELTDTVTLVTRdgDPRPIAAIVPASAARSAAQARADAD-----RLATVTAGWARRL----EESHRQSSRRHAAELRAVT--EALAEVWA 110
                 56667777774444444444477********95555555455555555.....6888999999999....5555666666666666666..99999999 PP

                 HHTHHBHTTHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 114 adplkvkpeaaeavasLkaag 134
                 +  ++v p+   a+a+L+aa 
  KIR61817.1 111 ELDRRVAPGSDPALARLRAAH 131
                 98889*************985 PP

>> V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  10.0   0.00077       4.6      27      80 ..      57     110 ..      52     136 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00077
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  V-ATPase_G_2  27 eaereveaAeaeAarilreAeakakalqaeyeqelaeevarireeararaeaea 80 
                    a+r+ ++A+a+A+r+++     a++l++ ++q  +++ a++r+  +a ae  a
    KIR61817.1  57 SAARSAAQARADADRLATVTAGWARRLEESHRQSSRRHAAELRAVTEALAEVWA 110
                   6889999********************************999988877776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 916.20
//
Query:       KIR61818.1  [L=188]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-18   66.1   0.0    6.1e-18   65.8   0.0    1.1  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
    8.6e-07   29.2   0.0    1.1e-06   28.8   0.0    1.2  1  Acetyltransf_1  Acetyltransferase (GNAT) family
     0.0054   16.4   0.1      0.014   15.1   0.0    1.7  2  Acetyltransf_8  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0     1e-21   6.1e-18       3     138 .]      11     156 ..       9     156 .. 0.83

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 1e-21
  Acetyltransf_3   3 lLrplteeDlealf.elrsdpe.vmry.lpe..pltleeaeewlerawaeeseeegygwaivl......kdtgviGsvglrdleeedeeaelgym 86 
                      Lrpl++  +e+++ +l   +e +  + +p    ++l+ a++ l+r+  +++++ g  w i l      ++t  +G v++ +++   + +e g +
      KIR61818.1  11 ELRPLEPWRAEEFLgHLDRAREhIAPWvGPSfvATDLASARAVLQRYADARARDAGGIWGIWLtgpapqQPT-LVGGVMFVSFDTALGVCEAGCW 104
                     689999999999965676655558888655589999*********854444445554488865667543333.6********************* PP

  Acetyltransf_3  87 lapsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     l p+++g+G+ t a+  ++++a +e g++r++++++++N +Si+v+++lG++
      KIR61818.1 105 LEPAAQGRGLITCAAGLIVDWAVRERGIHRVEWRTNPRNARSIAVARRLGMR 156
                     **************************************************96 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   1.9e-10   1.1e-06      26     117 .]      59     155 ..      30     155 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.9e-10
                     HHHHSTTCEEEE......EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHH CS
  Acetyltransf_1  26 esfsleaegllv......aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYe 113
                     +   ++a+g++       a   ++l+G +++   +      +   +++  p+++g+Gl +     ++++a +e gi+++++ + + n ++i++ +
      KIR61818.1  59 DARARDAGGIWGiwltgpAPQQPTLVGGVMFVSFDT--ALGVCEAGCWLEPAAQGRGLITCAAGLIVDWAVRErGIHRVEWRTNPRNARSIAVAR 151
                     333445555555422445555599*******99999..4455556****************************999*****99888********8 PP

                     HTTE CS
  Acetyltransf_1 114 klGF 117
                     +lG+
      KIR61818.1 152 RLGM 155
                     8995 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.25   1.5e+03      59      78 ..      45      63 ..      13      88 .. 0.59
   2 !   15.1   0.0   2.4e-06     0.014      88     143 ..     106     161 ..      92     163 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.25
                    EEEEEGGGCGGGGCS---TT CS
  Acetyltransf_8 59 feiYwakedelaeyydaepg 78
                      +  a++  l++y da+  
      KIR61818.1 45 TDLASARAV-LQRYADARAR 63
                    333222222.4444455555 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2.4e-06
                     SHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEEE CS
  Acetyltransf_8  88 eaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekekev 143
                     e++a g+gl+t     +v+++++++++ rv     +rN+r+i++ +++G+++ +++
      KIR61818.1 106 EPAAQGRGLITCAAGLIVDWAVRERGIHRVEWRTNPRNARSIAVARRLGMRRDGTL 161
                     68899**********************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1324.95
//
Query:       KIR61819.1  [L=1798]
Description: hypothetical protein TK50_30460 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-80  269.8   0.0    8.8e-80  268.4   0.0    1.7  1  AMP-binding      AMP-binding enzyme
      2e-54  185.0   0.0    1.2e-43  149.5   0.0    4.1  3  Condensation     Condensation domain
    1.2e-24   86.4   0.2    1.1e-11   45.0   0.1    3.0  2  PP-binding       Phosphopantetheine attachment site
    1.3e-14   54.9   3.0    1.4e-06   29.2   1.5    3.5  2  AMP-binding_C    AMP-binding enzyme C-terminal domain
    2.6e-11   43.9   0.0      5e-11   42.9   0.0    1.5  1  Methyltransf_21  Methyltransferase FkbM domain
  ------ inclusion threshold ------
      0.025   15.6   0.9       0.51   11.4   0.1    3.2  2  Methyltransf_24  Methyltransferase domain
       0.19   11.3   0.0       0.32   10.5   0.0    1.3  1  MTS              Methyltransferase small domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.4   0.0   3.4e-83   8.8e-80       5     422 ..     393     777 ..     392     778 .. 0.87

  Alignments for each domain:
  == domain 1  score: 268.4 bits;  conditional E-value: 3.4e-83
                  HHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETC CS
  AMP-binding   5 aaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatv 102
                  aa  pd+ a+v    +  +T++el++ ++ +AagL ++G+  g rV++l+ +s + vva+l++l+aGav vpl+p+ ++++la + ++++a +++   
   KIR61819.1 393 AAADPDAEAVVA--ADGAYTFGELRRLADGVAAGLVERGLHGGRRVGVLATRSRDTVVAFLGVLRAGAVFVPLDPAAPPRRLAELARAVDAGLVL-G- 486
                  56789*****99..8999******************99*********************************************************.2. PP

                  TCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH..HHHCSC CS
  AMP-binding 103 dselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk..letrfk 198
                          +++a+            ++++++   l +++ ++         +e++p d+ay+i+TSG+TG+P  V +sh+++++ +++l+  +  + +
   KIR61819.1 487 -------DRPVAGV----------PHAGVAE---LAATAATA-------ALPETRPTDPAYVIFTSGSTGTPRPVLVSHGSAAHLAHALErvV--YPN 555
                  .......2233332..........1222222...22222112.......223578*********************************97432..455 PP

                  CTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EB CS
  AMP-binding 199 lkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggepls 296
                  + ++ +v + +pl +++++    l+ l +G +++l+p+ a++d   l++l+++++v v+ ++P+ l+ ll+++  +    +  l+++   llggep++
   KIR61819.1 556 APAGARVAVNAPLTFDASV--KQLVQLGHGRSLYLVPEAARRDGVELAALLAAHRVDVLDLTPSQLRILLAADGVA--AGRAALPGVL--LLGGEPVP 647
                  55699*************6..9*****************99**88999*********************9965555..2333555544..47****** PP

                  HHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE... CS
  AMP-binding 297 pellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafds... 391
                  ++l++++ al g + +++YG+TE+t+ +t    e     ++++G+plpg+ + ++D + ++pvp+g  Gel++ gp+++ gYl++peata++f++   
   KIR61819.1 648 ADLWDAVAALPGVRAVNLYGPTEATVDATS-A-EITAGDPPTIGRPLPGTGAWVLDGQ-LRPVPPGAAGELCLTGPQLADGYLGDPEATARRFVPaal 742
                  **********999***************84.3.33334689***************98.***********************************8899 PP

                  ...T.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 392 ...e.grwlrTGDlgrldedGyleivgRkkdlikl 422
                       +r +rTGD +r+d++G+l ++gR++d++k+
   KIR61819.1 743 psgRvERVYRTGDRVRFDARGRLTYLGRLDDQVKV 777
                  9873569***************************8 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.5e-07   0.00064      30      82 ..      22      75 ..       4      95 .. 0.85
   2 !    9.3   0.0   0.00015      0.39     141     265 ..      98     202 ..      96     206 .. 0.59
   3 !  149.5   0.0   4.6e-47   1.2e-43       3     432 ..    1298    1704 ..    1296    1709 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.5e-07
                  EEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE...TTEEEEEE-TT----- CS
  Condensation 30 qavlklegeldlerlekalqelierhdaLRtvflee.engepvQvileerevel 82
                   a ++l+  ld  rl+ a+++++ rh+aLR++++++     p+Q ++++r+v++
    KIR61819.1 22 RARVRLDRPLDAARLQAAVDAVVARHEALRLTLVHHpGLRVPLQDVDDARSVTV 75
                  56689999**************************97467889*******99987 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00015
                   T--TTTHHHHHHHHHHHHHHHHTT-------S--.HHHHHHHHHHHHCSHHHHHHHHHHHHHHH......S.---BSS---SS---S-EEEEEEEE- CS
  Condensation 141 ivDGvSlgillrdlaklYqqlekgeelplpqktp.YkdyaeweqqyleskdlekeeaYWseqlegelpvlq.Lpkdkarpakrsfkadrlsikldee 235
                   ++D  Sl+++l dla++Y     g +l + ++   + d  ew+ +  e +             +g lp +  +p+ +  ++ +   +d  + +++e 
    KIR61819.1  98 VADPASLRLVLADLATAY----AGGSLADDPDALqFLDVSEWQFD--ERQ------------QAG-LPATPdVPAARLVTPHG---DDAAEESVAEV 172
                   667777777777777777....55554444444337777777222..222............223.22222244442222222...24444455566 PP

                   S-HHHHHHHHSTSS-HHHHHHHHHHHHHHH CS
  Condensation 236 teeklrklakeqgvtlndvllaalgllLsk 265
                       l+ +a + gvt+ ++llaa++l+Ls+
    KIR61819.1 173 PLGPLTAAADAAGVTVPSLLLAAWALTLSR 202
                   77789999********************98 PP

  == domain 3  score: 149.5 bits;  conditional E-value: 4.6e-47
                    EEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHH CS
  Condensation    3 deyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeee 97  
                    d yp++ +Q++m ++ +l +++  y+  ++ +++  ld+ +l+ a+ +l+  h++LRt f  +   ep+Q ++ ++++++ v  ++ ++  +  +
    KIR61819.1 1298 DAYPMTALQQGMVYHCELTGDPAMYHNVTAHRVDAPLDPAALRAAFAALVAAHPVLRTGFALDGYAEPLQLVHADAPADVPVDALAAADPAARAA 1392
                    68***********************************************************************9998888777777667777677 PP

                    HHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--..HHHHHHHHHHHHCSHH CS
  Condensation   98 aieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktp..Ykdyaeweqqyleskd 190 
                    ++++++ ++ ++pfd e+ pL+r + ++  +++++l+++ HH ++DG+Sl ++lr l +  +  + g++ p  +      + ++ +e+  l+   
    KIR61819.1 1393 HVDALIAAERARPFDWERPPLVRLHAVDEGADGFTLVVAEHHAVLDGWSLDLFLRALLADHERRRAGRPAPPAPAALppHH-HVAAERAALADP- 1485
                    8*******************************************************************9776554433355.555545556666. PP

                    HHHHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTT.C CS
  Condensation  191 lekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRes.e 284 
                       ++++W +        + L+     p  r +   +  + ld+++++++ ++a++ gv +++ lla+   +L +  g+dd+v g+++ gR++ +
    KIR61819.1 1486 --ATRRFWLDGPGA---ATPLLLG--GPGPRITV--TRPVPLDDDVTDRVAEAARAAGVPVKSYLLAVHLRALGETAGRDDVVSGLVVGGRPEgA 1571
                    ..89****766555...6666666..46666666..78999****************************************************66 PP

                    STCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HH...CCCEEECCCCSE CS
  Condensation  285 ikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgq...eseeeesqlsel 376 
                      + + ++GlF+ntlP+  ++ ++  ++el  +  ++ ++ + h ++pl e+v+           p fd+ f++  +  +        +s+ ++ 
    KIR61819.1 1572 --GSDATLGLFLNTLPVTATL-RGRPLAELAGDAWHAERSLMGHHRFPLAEIVRAGGAG------PRFDSFFNYTHFHADdraGPRVVASRVTTV 1657
                    ..9****************99.7778**************************9888743......56*******553333222111112222222 PP

                    EECEE...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHH CS
  Condensation  377 klsvssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelle 432 
                    +            + ++++ + +++g+l + ++Y   +Fd    +r++ ++++ll 
    KIR61819.1 1658 D---------VGFSLAVDVAVAPDTGRLALALQYDGRRFDADWADRLAATFTRLLA 1704
                    2.........2244577888888*****************************9996 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.1   4.1e-15   1.1e-11       3      66 ..    1172    1232 ..    1170    1232 .. 0.95
   2 !   38.2   0.0   5.2e-13   1.3e-09       2      67 .]    1731    1794 ..    1730    1794 .. 0.94

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 4.1e-15
  PP-binding    3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaay 66  
                  l e+++evlg+++  +++++++f lG+DS+ ++++++a  ++ g+++ l+d+f+h++++el+++
  KIR61819.1 1172 LAEAWREVLGLET--VGVTDSFFALGGDSIRSIQMQVAAARR-GLSFRLRDIFAHQSIRELVDH 1232
                  889********97..559***********************9.*******************98 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 5.2e-13
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  ++  ++++vlgv + +  + t++   G+DSl a++l++ l++++g+ ++l+++ ++   ++l++++
  KIR61819.1 1731 RVAGAWRDVLGVTPRS--AATTFAAAGGDSLRALRLVRTLRQRYGTGLTLAEFADLADFGALVERV 1794
                  68899*******9877..9**********************************99***99999875 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   1.5   5.4e-10   1.4e-06       1      39 [.     786     824 ..     786     839 .. 0.86
   2 !   23.0   0.0   4.5e-08   0.00011      33      76 .]    1100    1142 ..    1089    1142 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 5.4e-10
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgs 39 
                    ev ++l +hp+Va+aaVv+ +d+  G +lva+V+++ g+
     KIR61819.1 786 EVAAVLREHPGVADAAVVARDDDGHGARLVAYVTPAGGP 824
                    7889*******************************7554 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 4.5e-08
                     EEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   33 VvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                       ++dg e+l++ L a++ ++l+++ vp +vv++d+lp+t +GK
     KIR61819.1 1100 AAPADG-EPLDARLAAWLPERLPAHLVPAAVVVLDALPLTGNGK 1142
                     445555.4689********************************9 PP

>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0     2e-14     5e-11       1     172 [.     868    1066 ..     868    1067 .. 0.71

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 2e-14
  Methyltransf_21    1 dvGanigvwdsfanltarlcggggevlaiEPvpnslpkfeklranlltlavgndv....................................g 56  
                       dvGanig ++ f++++   c + ++++a+EPvp+     e lr+n+ t++v  +v                                    +
       KIR61819.1  868 DVGANIGMFSLFVHAV---C-PDATIHAFEPVPS---VVEALRRNVATFGVPATVhphglaatpgevdftyypgyammsghaeyadpaaeqA 952 
                       9******999999775...3.4555679******...********99999998888888999999888888888888886654443222211 PP

  Methyltransf_21   57 lyelivegksggkyfpfavgdtngfstssvlg...................gedaryievpvvtldsfleeikksridllkiDvEGaElevL 129 
                        +          + +++                                  +   +   v v+ l+++++e  ++ridllkiDv+ aE +vL
       KIR61819.1  953 VIRR--------FLANER-------------DrgeadrgalldrvdellteRFAPDRLSVAVRPLSDVIDEVAPERIDLLKIDVQRAEADVL 1023
                       1111........112222.............01222222223344456667889999*********************************** PP

  Methyltransf_21  130 eG..aqkglkrcqpnlivvEvhkfk.efetelfdeirqflrecgyr 172 
                        G  + ++    q   + +Evh+   +      de+++f++e+g+ 
       KIR61819.1 1024 AGirEVHWPLVAQ---VAMEVHDGVgTATEGRLDELIAFFEERGFT 1066
                       8875333333323...557999977555558899**********96 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1    0.0002      0.51      26      97 ..     957    1036 ..     869    1043 .. 0.81
   2 ?    0.7   0.1      0.42   1.1e+03      44      86 ..    1349    1405 ..    1283    1415 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
  Methyltransf_24   26 lvavdhdpg.......aeeaaalareaglddrvrlikadseealaslaagsiDllfiDgghaaeavledleal.lprlap 97  
                        +a + d+g         ++++l+ e    dr+ + + ++++++ ++a ++iDll iD + a ++vl+ ++ + +p++a+
       KIR61819.1  957 FLANERDRGeadrgalLDRVDELLTERFAPDRLSVAVRPLSDVIDEVAPERIDLLKIDVQRAEADVLAGIREVhWPLVAQ 1036
                       445555555333333333455666669999************************************99987664777765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.42
  Methyltransf_24   44 e..........aglddrvrlikadseealasla....agsiDllfiDgghaaeavle 86  
                                   g+++ ++l++ad+++ ++  a    +     +++D+  aae++++
       KIR61819.1 1349 AhpvlrtgfalDGYAEPLQLVHADAPADVPVDAlaaaDPAARAAHVDALIAAERARP 1405
                       234444466667888889999999977777333335557788999999888877665 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00013      0.32      32      91 ..     863     922 ..     854     931 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
                 CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTT CS
         MTS  32 sgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvle 91 
                   +v D+G+ +G+ ++ + + +p+a++++++     +e+ ++n+++ ++ ++v+ + + +
  KIR61819.1 863 GATVFDVGANIGMFSLFVHAVCPDATIHAFEPVPSVVEALRRNVATFGVPATVHPHGLAA 922
                 5679*****************************************999998887766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1798 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.96u 0.27s 00:00:01.23 Elapsed: 00:00:00.48
# Mc/sec: 11369.08
//
Query:       KIR61820.1  [L=233]
Description: thioesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-37  129.9   0.0    1.7e-37  129.8   0.0    1.0  1  Thioesterase   Thioesterase domain
    7.5e-09   36.5  12.5    8.9e-09   36.3  12.5    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0024   17.7   0.0     0.0032   17.4   0.0    1.2  1  Abhydrolase_3  alpha/beta hydrolase fold
     0.0028   17.0   0.0      0.045   13.0   0.0    2.1  2  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.035   13.6   0.0      0.048   13.2   0.0    1.1  1  DUF900         Alpha/beta hydrolase of unknown function (DUF9
      0.051   13.3   0.0       0.07   12.8   0.0    1.1  1  PGAP1          PGAP1-like protein
      0.077   12.8   0.0      0.099   12.4   0.0    1.2  1  Abhydrolase_2  Phospholipase/Carboxylesterase
      0.098   12.2   0.0       0.13   11.8   0.0    1.1  1  LIDHydrolase   Lipid-droplet associated hydrolase
       0.33   10.1   0.0       0.41    9.7   0.0    1.1  1  LCAT           Lecithin:cholesterol acyltransferase


Domain annotation for each model (and alignments):
>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.8   0.0   8.3e-41   1.7e-37       2     226 ..       5     226 ..       4     231 .. 0.92

  Alignments for each domain:
  == domain 1  score: 129.8 bits;  conditional E-value: 8.3e-41
                   EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST..SHHHCTTCHHHHHHHHHHHHHH.H-SSSSEEEEEETHHHHHHHHHHHHHHHC.T-SE CS
  Thioesterase   2 pLflfppagGsasvfrslasklsdpvvevlavqlpgre..rdepplesieelaaeyaealrq.iqpegPyalfGhSlGgllAfevArqLesq.Glav 94 
                   +L +fp+ag++ sv++ +++  +++  +v+ v lpgre  + e+p + +e+ ++ +++++++ +  ++ +alfGhS+G+ lA+e++r+L    G av
    KIR61820.1   5 TLLCFPYAGAGPSVYQPWRRVAPPE-LDVVPVSLPGREkrFVEEPYRRLEQAVDGLLDEVLElVAGRDRVALFGHSMGAVLAYEMTRRLTGAaGVAV 100
                   79**********************7.*************99****************99777156777**********************999**** PP

                   EEEEEESCCCCCCHHCHHCCCHTTHHTHHHHHCCTTHHHCCTTTHCCHHHHHHHHHHHHHHHHHTCCS-TTSCSEHHCEEEEEEGSS-CTCCCCCCC CS
  Thioesterase  95 kslflidssapseteaqeasrraedeefveeltdlggtepeelledeellsellpalradyraleqyslrpeaaqklratlfngsddklkdldtlel 191
                    +lf+++s+ p +  +++a   ++de fv+   ++ g     +l+d+++ + llp+lrad+ + e y+   e++  +++t + g dd+l + +    
    KIR61820.1 101 SHLFVSGSPDPWSGRERTAAGLPDDE-FVARVEEFAGY-THPALADPDMRELLLPVLRADVELHEAYRPAGEKRVDVPVTALRGADDTLVADE---A 192
                   *************8999999999999.**********8.99**************************977777777*************9999...5 PP

                   HCHCHCTCESCEEEEEESSHCCHHHSHHHHHHHHH CS
  Thioesterase 192 aerweqktsgevsvhvlegdhfylledrleavlei 226
                    ++w ++ts  + v++l+g+h+yl+ d + avl+ 
    KIR61820.1 193 LAGWGRVTSATFAVRRLPGGHMYLT-DSPAAVLDL 226
                   666**********************.577777765 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3  12.5   4.5e-12   8.9e-09       8     219 ..      13     225 ..       6     226 .. 0.54

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 4.5e-12
                    C.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHH.HHHHCCTT.....TTSEEEEEETCHHHHHHHHHHCC..........EE. CS
  Abhydrolase_6   8 gssassWlvapLaallaagvhvlapDlpGhGrsdpppldledladl.aalldelaa...gggpvvlvGHSlGGalalaaapla........lvvg. 90 
                    g+++s+++  p+++ ++    v+ ++lpG          +++l++  + llde+ +   g+++v l+GHS+G++la +    +        + v+ 
     KIR61820.1  13 GAGPSVYQ--PWRRVAPPELDVVPVSLPGRE-KRFVEEPYRRLEQAvDGLLDEVLElvaGRDRVALFGHSMGAVLAYE---MTrrltgaagVAVSh 102
                    35567776..7777777777779*******5.78888999886444466777777788899*****************...443223333322333 PP

                    EEES-..----TTTS----TTHHHHHHTT-CCCCHCCH....S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHC.HTTCCHHTT-TTGCEEECTT-C CS
  Abhydrolase_6  91 vlldppptalpagllaaalelllallallrllawlsre....plprlfladedadaawrarlarlaallaglg.llpaaawadlpvpllvlggeDp 181
                    +++++          +++++  ++  a l+++++++r      ++++ lad+d     r+ l ++++ +  l  ++++a  +++ vp+  l g+D+
     KIR61820.1 103 LFVSG---------SPDPWSGRERTAAGLPDDEFVARVeefaGYTHPALADPD----MRELLLPVLRADVELHeAYRPAGEKRVDVPVTALRGADD 185
                    44444.........333333333333344444555322222223333333333....333333333333322223334444444444422225555 PP

                    HHHHCHHCCCH....STTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 182 lvprllerlla....qagarlpvvlpgaGHlphleepdevae 219
                    ++   ++++la    +++a+++v    +GH+++ ++p++v +
     KIR61820.1 186 TLV--ADEALAgwgrVTSATFAVRRLPGGHMYLTDSPAAVLD 225
                    444..4444444223333333366667*******9**99965 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.6e-06    0.0032      54     155 ..      54     152 ..      43     207 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.6e-06
                    HHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE..........-SSTSSTTSHHHHHCHHT.TTSSSSCHHHHH CS
  Abhydrolase_3  54 aalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepkvagqvliyP..........vtdlertesesikkaeel.adgplltraald 138
                    +a+  l+++  el a  +r++l+G S G+ la+ +++r+  + +++     l+                         +a+ l +d+ +   ++++
     KIR61820.1  54 QAVDGLLDEVLELVAGRDRVALFGHSMGAVLAYEMTRRLTGAAGVA--VSHLFVSgspdpwsgreR------------TAAGLpDDEFVARVEEFA 135
                    56667777766888999*********************99986444..444444411244332221............222222333333333333 PP

                    HHHHHHSSGGGGGSTTT CS
  Abhydrolase_3 139 lfwrlylpeadrddpla 155
                     ++   l++ d+++ l+
     KIR61820.1 136 GYTHPALADPDMRELLL 152
                    33333333333333333 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.2e-05     0.045      73      99 ..      68      94 ..      40     117 .. 0.73
   2 ?    2.0   0.0     0.054   1.1e+02     187     209 ..     170     192 ..     156     218 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.2e-05
  Hydrolase_4 73 hpelplfllGhSmGGliallyllrypd 99
                  ++ ++ l+GhSmG+++a +++ r   
   KIR61820.1 68 AGRDRVALFGHSMGAVLAYEMTRRLTG 94
                 344599************999866554 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.054
  Hydrolase_4 187 aakitlPllllhGeaDkvvdpea 209
                   +++++P+  l G++D++v  ea
   KIR61820.1 170 EKRVDVPVTALRGADDTLVADEA 192
                  56788*************98765 PP

>> DUF900  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.4e-05     0.048      91     121 ..      68      98 ..      46     111 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.4e-05
      DUF900  91 ksakkihllaHSmGtwlvlealrqlaieade 121
                 ++++++ l+ HSmG  l+ e+ r l   a  
  KIR61820.1  68 AGRDRVALFGHSMGAVLAYEMTRRLTGAAGV 98 
                 5679********************9987764 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.5e-05      0.07      72     128 ..      52     109 ..      41     119 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.5e-05
       PGAP1  72 lndaIkyIlslysssekeptsviliGHSmGGivaraalt.lknyikqsvntiltlasP 128
                 l++a+  +l+   +      +v l GHSmG ++a  ++  l   +  +v+ +++ +sP
  KIR61820.1  52 LEQAVDGLLDEVLELVAGRDRVALFGHSMGAVLAYEMTRrLTGAAGVAVSHLFVSGSP 109
                 56666666666666668899**************988761444677788888888888 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     5e-05     0.099      88     133 ..      54      99 ..       7     108 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5e-05
                    HHHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHT-SS--SEE CS
  Abhydrolase_2  88 ekleelidaelkkgipssriiigGFSqGaalalylaltlpkklggi 133
                    + +  l+d+ l+    ++r++++G S+Ga+la + +  l+  +g +
     KIR61820.1  54 QAVDGLLDEVLELVAGRDRVALFGHSMGAVLAYEMTRRLTGAAGVA 99 
                    3444555566666699****************88877766665555 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.4e-05      0.13      63     110 ..      54      96 ..      24     106 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.4e-05
  LIDHydrolase  63 dQiehkedflkellekaksekdvklilvGHSvGaYialevlkrlsers 110
                   + ++   d + el+     + + ++ l GHS Ga +a e+ +rl   +
    KIR61820.1  54 QAVDGLLDEVLELV-----AGRDRVALFGHSMGAVLAYEMTRRLTGAA 96 
                   44444444444444.....58999******************998765 PP

>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00021      0.41     113     141 ..      61      91 ..      46     117 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00021
        LCAT 113 eealk..lsgkkvvliaHSmGnllvlyflkw 141
                 +e+l+  ++ ++v l++HSmG+ l +++ ++
  KIR61820.1  61 DEVLElvAGRDRVALFGHSMGAVLAYEMTRR 91 
                 555554457789**********999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1750.64
//
Query:       KIR61821.1  [L=393]
Description: methionine gamma-lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.1e-122  408.4   0.0   2.4e-122  408.2   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    5.5e-11   42.2   0.0    7.6e-11   41.8   0.0    1.1  1  Aminotran_1_2    Aminotransferase class I and II
    3.7e-09   36.0   0.4    5.1e-09   35.6   0.4    1.1  1  Aminotran_5      Aminotransferase class-V
    9.7e-06   24.8   0.3    0.00024   20.2   0.3    2.1  1  SelA             L-seryl-tRNA selenium transferase
    1.8e-05   23.5   0.0    2.6e-05   22.9   0.0    1.2  1  Met_gamma_lyase  Methionine gamma-lyase
     0.0016   17.7   0.0     0.0029   16.9   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  408.2   0.0  7.9e-126  2.4e-122       2     381 ..       6     385 ..       5     386 .. 0.96

  Alignments for each domain:
  == domain 1  score: 408.2 bits;  conditional E-value: 7.9e-126
                      HHHHHTTTTCHTTTTBSS--B---SBBBESSHHHH...CTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTE CS
  Cys_Met_Meta_PP   2 Tllvhagqekdeqtgavavpiyltstykfkdvdea...fageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallkaGd 92 
                      T+++h + + +   gav++pi++++t+  ++ ++    +++ + + +Y+R+gnp++  + + +a+Leg+e +l+++sGm+A++++ lall+aGd
       KIR61821.1   6 TTAIHGDDDLH-PPGAVSPPIVQSATFGAESDERFtevATQVRPDAFYTRYGNPNHAQVAAVVAELEGVETGLVTASGMGAVTTIALALLSAGD 98 
                      78888888876.69***************966665874444445599*********************************************** PP

                      EEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-GGG CS
  Cys_Met_Meta_PP  93 eivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqrplk 186
                      +++v+++ Yggt +l + +l+++g++++ vd++d++++++a++++t+l+++Etp+npll+++D++++++la+++g+  vvDntfa+p++qrp +
       KIR61821.1  99 HVIVQRSTYGGTTSLATGLLTRFGVTCTQVDQTDVDAFARALTPRTRLLLVETPSNPLLELTDLTAVIELAHAHGAYAVVDNTFATPVNQRPAA 192
                      ********************************************************************************************** PP

                      GT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-TT CS
  Cys_Met_Meta_PP 187 lgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekhpkvekvyYpg 280
                      lgaD+v hSaTK+lgGhsdv aGv+v ++  el +++ ++   +Ga+l p d+wlllrG++TL lR+ rh+ nAl++A+ Le+hp+v +v+Ypg
       KIR61821.1 193 LGADLVWHSATKFLGGHSDVTAGVVVGSA--ELVDRVWQTAIVTGATLGPIDSWLLLRGIRTLPLRMARHNDNALALARELEAHPAVARVRYPG 284
                      **************************555..9999999999***************************************************** PP

                      STTSTTHHHHHHHSSSG-SEEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHH CS
  Cys_Met_Meta_PP 281 lpshpqhelakkqlkgaggvlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGiEdvdDli 374
                      lpshpqh+la kq++g+ggv+s++l +++ +a++++ +l+l++ a+slG+v +l+ +p sm    ++  + +a+g+ ++l+R+s GiEd+ Dl+
       KIR61821.1 285 LPSHPQHDLATKQMSGYGGVFSLDLAGGQPAAATLLAELRLAKRAASLGSVSTLVVHPRSMWAGIVDTAQLAATGIGEGLVRVSTGIEDTADLL 378
                      *****************************99*************************************************************** PP

                      HHHHHHH CS
  Cys_Met_Meta_PP 375 aDlkqal 381
                      aD+ +al
       KIR61821.1 379 ADFTRAL 385
                      *****99 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   2.5e-14   7.6e-11      38     198 ..      53     190 ..      39     231 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 2.5e-14
                    TST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHH....HTTSEEEEEEBEETTTTE CS
  Aminotran_1_2  38 neygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilr....lsggevvryplyseedfh 129
                    ++yg++  ++++   +a++ g         e+ +v+ sG ga+  ++ +ll+  +gd ++v + ty+  +  +       g+++ ++        +
     KIR61821.1  53 TRYGNPN-HAQVAAVVAELEG--------VETGLVTASGMGAVTTIALALLS--AGDHVIVQRSTYGGTTSLATglltRFGVTCTQVD-------Q 130
                    6899999.99999999*****........99********************9..************9988776522002344444555.......* PP

                    E-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSS CS
  Aminotran_1_2 130 ldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl 198
                     d++a+ +al+       +t+++lve+p+NP   ++ l +l+++++la++++++ +vD ++a+ v + +
     KIR61821.1 131 TDVDAFARALTP------RTRLLLVETPSNP---LLELTDLTAVIELAHAHGAYAVVDNTFATPVNQRP 190
                    ***********9......*************...5999999999999***************9998854 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.4   1.7e-12   5.1e-09      47     205 ..      62     208 ..      38     238 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 1.7e-12
                  HHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEE CS
  Aminotran_5  47 earekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklva 144
                  ++ + vael ++e+   ++  sG + a++++al+l   l++gd+++v+++ + +++  +  l  r g++ + +      + d+d+++ +l+++t+l+ 
   KIR61821.1  62 QVAAVVAELEGVET--GLVTASGMG-AVTTIALAL---LSAGDHVIVQRSTYGGTTSLATGLLTRFGVTCTQVD-----QTDVDAFARALTPRTRLLL 148
                  55566777777775..666666666.*********...******************999999999998886555.....589**************** PP

                  EESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTTTTSS CS
  Aminotran_5 145 ithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghKllgP 205
                  +   sn +  + ++ ++++la+++ga+ +vD + a +      ++lg+D++  s+ K+lg 
   KIR61821.1 149 VETPSNPLLELTDLTAVIELAHAHGAYAVVDNTFATPVN-QRPAALGADLVWHSATKFLGG 208
                  *******************************99888755.46789************9985 PP

>> SelA  L-seryl-tRNA selenium transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.3   8.1e-08   0.00024      50     236 ..      61     230 ..      53     236 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 8.1e-08
                 HHHHHHHHHHHT-SEEEEES-HHHHHH.HHHHHHHBTSEEEEETTSGTEETTTEEHH.HHHHHHTBEEEEESBSSB--HHHHHHT--TTEEEEEEE--- CS
        SelA  50 alveellkeltgaedalvvnnnaaavl.lvLntlaagkeviisrGeLveiGGsfriP.dvmkkaGvkLvevGttnkthlkDyekainentalllkvhts 146
                 a+v+ ++ el g e  lv     +av  ++L+ l+ag +vi+ r      GG+  +   ++++ Gv+ + v   ++t +  + +a++++t lll    s
  KIR61821.1  61 AQVAAVVAELEGVETGLVTASGMGAVTtIALALLSAGDHVIVQRST---YGGTTSLAtGLLTRFGVTCTQV---DQTDVDAFARALTPRTRLLLVETPS 153
                 6789999*************9999995389**************96...588887752699*****99998...57899***************99999 PP

                 SEEEEES-B---HHHHHHHHHHHT--EEEEEES-B-S-GGGGT-----BHHHHHHTT-SEEEEETTSTT-S...SS-EEEEE-HHHHHHHHHS CS
        SelA 147 nyrieGftkevelaeLvelgkekglpvleDlGsGllvdlseyglskePtvqealaeGvdlvsfsGDkllGg...pqaGiivGkkelieklkkn 236
                 n  +    +  +l  + el++ +g        + ++vd +       P  q   a G+dlv  s  k+lGg   + aG++vG  el++++ + 
  KIR61821.1 154 NPLL----ELTDLTAVIELAHAHG--------AYAVVDNT----FATPVNQRPAALGADLVWHSATKFLGGhsdVTAGVVVGSAELVDRVWQT 230
                 9544....2334444555555554........45555532....34688899999***************955568************99765 PP

>> Met_gamma_lyase  Methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   8.8e-09   2.6e-05      61     246 ..      64     227 ..      45     240 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 8.8e-09
  Met_gamma_lyase  61 dkvyaevfgaeaalvrpqlvsGthaiatalfgvlrpgdellaitGkPydtleeviGlrgegqgslkdfgikykevdlleegkvdieavkeaike 154
                       +v ae+ g e++lv     sG  a++t+  + l  gd+++    + y       G++   +g l  fg++  +vd ++     ++a ++a+++
       KIR61821.1  64 AAVVAELEGVETGLVT---ASGMGAVTTIALALLSAGDHVIV-QRSTYG------GTTSLATGLLTRFGVTCTQVDQTD-----VDAFARALTP 142
                      5566666666666664...46777777777777778887664.445554......555668899999999999987655.....8899****** PP

  Met_gamma_lyase 155 ktkliliqrskGyserkslsieeieeiiklvkeinedvivfvdncyGefveekePtevGadliaGsliknpGGgiaktGGyiaGkeelveaa 246
                      +t+l+l+       + + l++ +++ +i+l ++        vdn +   v++  P+++Gadl+  s  k  GG    t G ++G +elv++ 
       KIR61821.1 143 RTRLLLVETP----SNPLLELTDLTAVIELAHAHGA--YAVVDNTFATPVNQ-RPAALGADLVWHSATKFLGGHSDVTAGVVVGSAELVDRV 227
                      ******9865....57999*********99887665..4568******9985.6***********************************976 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   9.8e-07    0.0029      30     276 ..      56     277 ..      41     285 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 9.8e-07
                      --HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSST.THHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S- CS
  Beta_elim_lyase  30 edktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtepahihfdet.gaiaelagvklrdlknkeaGkmdlekleaaikevg 122
                      ++++  ++++ vael g e +l +++G +A      +ll  g+ viv++   + ++    ++ +  gv+ ++++     + d++++++a+++  
       KIR61821.1  56 GNPNHAQVAAVVAELEGVETGLVTASGMGAVTTIALALLSAGDHVIVQRSTYGGTTSLaTGLLTRFGVTCTQVD-----QTDVDAFARALTP-- 142
                      5789999***********************99999999999999999887544443332333333344333333.....4668888888888.. PP

                      TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSS..TT--SS-.EEEEE-HH CS
  Beta_elim_lyase 123 aheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkK..dllanvG.gvlafrdd 213
                          +++l+++++  n      ++l  l +v ++a+++g   ++D      +  +  +  +  + ++D v+ s++K  +++  v  gv++++ +
       KIR61821.1 143 ----RTRLLLVETPSNP----LLELTDLTAVIELAHAHGAYAVVD------NTFATPVNQRPAALGADLVWHSATKflGGHSDVTaGVVVGSAE 222
                      ....699********95....9*******************9988......667888888999999**********888889998899999999 PP

                      ....HHHHHHHHHHHHT---SSTHHHHH..HHHHHHHHSSTTHHHHHHHHHHHHHHHHHCT-- CS
  Beta_elim_lyase 214 eledylaerveqrkylggglrqagvlaaleagiraleeglaslerdhktaeqlaeklelvrla 276
                           +++ ++++   g  l   +       gir+l     +++r++++a  la++le+++ +
       KIR61821.1 223 ----LVDRVWQTAIVTGATLGPIDSWLL-LRGIRTLP---LRMARHNDNALALARELEAHPAV 277
                      ....777666667777888875553333.24555555...45888888888888888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2769.31
//
Query:       KIR61822.1  [L=330]
Description: proline iminopeptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-29  103.2   0.1    1.1e-28  100.6   0.1    1.9  1  Abhydrolase_1  alpha/beta hydrolase fold
    1.7e-10   40.6   0.2    1.2e-09   37.8   0.1    2.3  2  Hydrolase_4    Serine aminopeptidase, S33
    2.9e-05   22.9   0.0    4.7e-05   22.2   0.0    1.2  1  Ndr            Ndr family
     0.0029   16.5   0.0     0.0044   15.9   0.0    1.1  1  Peptidase_S28  Serine carboxypeptidase S28
     0.0085   16.2   0.0      0.016   15.3   0.0    1.4  1  Abhydrolase_4  TAP-like protein
  ------ inclusion threshold ------
      0.054   13.1   0.0      0.085   12.4   0.0    1.3  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
       0.11   12.1   0.1        1.1    8.8   0.0    2.2  2  Abhydrolase_8  Alpha/beta hydrolase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.1   4.4e-32   1.1e-28       5     252 ..      37     308 ..      35     311 .. 0.80

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 4.4e-32
                    EE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB....CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1   5 ilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin...ddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyper 97 
                     +hG+pg+s ++      + ++ ++++++ +D+rG+g+S+p+ + +     + +t+++ +d++r++++lg+d++ l G S+G++++laya+++p+r
     KIR61822.1  37 TVHGGPGGSSSPG---TRRLFDPSRYRIVQFDQRGCGRSTPHASDPAadlRHNTTDHLLADMERLREHLGVDRWLLFGNSWGSTLGLAYAQRHPQR 129
                    58*****998744...45555666********************9999998889****************************************** PP

                    EEEEEEESE.CSSCCHHHHHHHHHHHHHHCHHCHHH...HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH.......................HCH CS
  Abhydrolase_1  98 Vkalvllga.idpaaslieaqrqqaksfpdffdgya...adcarnpagplladelaaleqrhrlvdalkf.......................pdk 166
                    V+a+vl+g  ++  ++++ + r     fp+++++++   ++  r++ +p  ++ + +l  + rl+ ++ +                       + +
     KIR61822.1 130 VSAIVLVGVtMSRRSEIDWLYRGVGRFFPEQWRRFVdavPAADRPAIAPGRGSAAELLAAYARLL-EHPDaqvrqraaiawltwedtvvslepNGT 224
                    *********66666666666666777889999999722256789999999999999999999874.444468889988888888887777776555 PP

                    HHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCTHHHHS..EEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSH CS
  Abhydrolase_1 167 skrfpssgsdnasslatgalksieqwpttdsaklllrlrelknvla..ptlvisgtsDplvppkaledlaqllpkkrlvvisdagHla 252
                     + ++ + +d+++  ++  + ++++  +++ ++ll++  +    la  p ++++g+ D  +p +  + la+++p+++l+v++d+gH+ 
     KIR61822.1 225 PDVYRDQPPDDQVAFVRLCAHYFSHGMWLADDALLRDAHR----LAgiPGVLVHGRFDLGAPLETPWSLARAWPDAELIVVDDSGHTG 308
                    5555555555556666656666666666665555555555....3355**************************************85 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.1   4.7e-13   1.2e-09      32     137 ..      59     164 ..      51     307 .. 0.82
   2 ?   -0.4   0.0      0.22   5.6e+02      31      53 ..     295     317 ..     271     321 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 4.7e-13
  Hydrolase_4  32 favyalDhrGhGrse......gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikaklkappll 123
                  + ++ +D+rG Grs        +  + + +d++++D++ + e++       +  l+G S+G+++ l+y++r+p++v++++l++  ++ +++  + +l+
   KIR61822.1  59 YRIVQFDQRGCGRSTphasdpAADLRHNTTDHLLADMERLREHLG----VDRWLLFGNSWGSTLGLAYAQRHPQRVSAIVLVGVTMSRRSE--IDWLY 150
                  77889**********777777667777788888888866654444....55789*****************************99998876..77888 PP

  Hydrolase_4 124 klllkllgkllpkl 137
                  + + +++ + ++++
   KIR61822.1 151 RGVGRFFPEQWRRF 164
                  87777776666654 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.22
  Hydrolase_4  31 GfavyalDhrGhGrsegkrghvp 53 
                  + + + +D  Gh  se  rgh++
   KIR61822.1 295 DAELIVVDDSGHTGSETLRGHLR 317
                  45677899***********9986 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.8e-08   4.7e-05      74     145 ..      80     151 ..      69     161 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.8e-08
                 -TT-----HHHHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHH CS
         Ndr  74 pedyqfpslddladqllavldhfklksviglGvgaGAyilarfalkhperveglvLinitskaagwvewake 145
                 + d    + d+l  +++ + +h+ ++  + +G   G  + + +a +hp+rv+++vL+ +t + ++ ++w ++
  KIR61822.1  80 AADLRHNTTDHLLADMERLREHLGVDRWLLFGNSWGSTLGLAYAQRHPQRVSAIVLVGVTMSRRSEIDWLYR 151
                 45556669999999*******************************************************986 PP

>> Peptidase_S28  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.7e-06    0.0044      62     141 ..      61     133 ..      59     137 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.7e-06
  Peptidase_S28  62 vlslEHRfYGqSiPvkdlstenlrylsseqaLaDlasfikalkqkfklsssskwitfGgSYsgsLaawarkkyPelvvga 141
                    +++   R  G S P +    ++lr+ ++ + LaD+   ++ l          +w +fG S++ +L     + +P+ v++ 
     KIR61822.1  61 IVQFDQRGCGRSTPHASDPAADLRHNTTDHLLADMERLREHLG-------VDRWLLFGNSWGSTLGLAYAQRHPQRVSAI 133
                    566777888**************************99999998.......467**************9*******99885 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.2e-06     0.016      35      77 ..     268     310 ..     235     323 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.2e-06
  Abhydrolase_4  35 apvLllqnerDpaTPyegakklakalggavlvtvegeGHgala 77 
                    +p  l+ ++ D   P+e+  +la+a ++a+l++v+++GH++++
     KIR61822.1 268 IPGVLVHGRFDLGAPLETPWSLARAWPDAELIVVDDSGHTGSE 310
                    7889************************************976 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.3e-05     0.085     106     240 ..     110     279 ..     108     308 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.3e-05
                    EEECHHHHHHHHHCTT--TTEEEEEEECE-S-TCCC.CSECTTEEBCCHHHHH.......................HHHHCCCCHHTSSS-STTHH CS
  Peptidase_S15 106 tGiSYlGttqllaaatgvpalkaivpeaaisdlydd.yyregGlvrapgglsw.......................edldllaealtsrradegda 177
                    +G+S++ t+ l+ a+++++++ aiv +  ++++  +  + + G+    +  +w                       e l++ a  l++++a+ +++
     KIR61822.1 110 FGNSWGSTLGLAYAQRHPQRVSAIVLVGVTMSRRSEiDWLYRGV-GRFFPEQWrrfvdavpaadrpaiapgrgsaaELLAAYARLLEHPDAQVRQR 204
                    7*************************999999999955555554.444667998889999999999999998887766666666677777777766 PP

                    HHHHHH..........HHCHCCCCCCTTHHHTHHHHCCCC--SSSHHHHTT-HH.HHH.CT--S-EEEEEECCSS CS
  Peptidase_S15 178 lkaaar..........yeaasdellaeldrqtpveselletgdydafWkdrnls.eda.dkvkapvllvgGwnDw 240
                    ++ a+            +   d ++ + +++++ + +l  +   + +W + ++  +da +  ++p +lv+G +D 
     KIR61822.1 205 AAIAWLtwedtvvslePNGTPDVYRDQPPDDQVAFVRLCAHYFSHGMWLADDALlRDAhRLAGIPGVLVHGRFDL 279
                    666666888888887777777778888888889999999999999999887776234447789999999999995 PP

>> Abhydrolase_8  Alpha/beta hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00044       1.1     109     141 ..     105     137 ..      71     145 .. 0.73
   2 ?    0.7   0.1      0.14   3.6e+02      44      73 ..     185     214 ..     173     230 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00044
  Abhydrolase_8 109 qhlallgHSYGSlvaslAlddaaseVsdvvlyG 141
                    ++  l+g S+GS +    ++  +++Vs +vl+G
     KIR61822.1 105 DRWLLFGNSWGSTLGLAYAQRHPQRVSAIVLVG 137
                    45679*******8866666779**********9 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.14
  Abhydrolase_8  44 rglraeaaaaeeaagkpesvAviAWlgYea 73 
                      l+a a+ +e+  ++  + A+iAWl +e 
     KIR61822.1 185 ELLAAYARLLEHPDAQVRQRAAIAWLTWED 214
                    55666667777777788899*****99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2229.77
//
Query:       KIR61823.1  [L=279]
Description: hypothetical protein TK50_30520 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.26   11.7   1.6        9.3    6.7   0.0    2.7  3  HCV_core  Hepatitis C virus core protein


Domain annotation for each model (and alignments):
>> HCV_core  Hepatitis C virus core protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.61   1.1e+04       3      15 ..      19      31 ..      17      38 .. 0.63
   2 ?    6.7   0.0   0.00052       9.3      41      62 ..     120     141 ..     115     152 .. 0.77
   3 ?    3.5   0.1    0.0052        93      21      53 ..     154     186 ..     151     193 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.61
    HCV_core  3 nlgkvidtltcgf 15
                 l  v+ tlt  +
  KIR61823.1 19 RLVAVLATLTAVL 31
                5556666666554 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00052
    HCV_core  41 rvledgvnyatgnlpgcsfsif 62 
                  + ed v +a  n+pg sf  +
  KIR61823.1 120 TLEEDDVYFAMLNVPGISFGTM 141
                 5569***************764 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.0052
    HCV_core  21 yiplvgaplggaaralahgvrvledgvnyatgn 53 
                 y+ +  + lgga r +   v v   g + atg+
  KIR61823.1 154 YVDVDPTDLGGARRLVDAAVSVQSGGEQAATGK 186
                 66666778******************9999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2001.27
//
Query:       KIR61824.1  [L=397]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-14   53.5   0.9    2.3e-14   53.5   0.9    4.2  4  HTH_31          Helix-turn-helix domain
    1.4e-12   47.5   0.0    8.4e-12   45.0   0.0    2.3  2  HTH_3           Helix-turn-helix
    3.2e-12   46.3   0.0    1.7e-11   44.0   0.0    2.0  2  HTH_19          Helix-turn-helix domain
     0.0018   17.8   0.0     0.0048   16.4   0.0    1.7  1  Sigma70_r4      Sigma-70, region 4
      0.005   16.8   0.1      0.016   15.2   0.0    1.9  2  HTH_37          Helix-turn-helix domain
     0.0071   16.8   0.1      0.024   15.1   0.0    1.8  2  HTH_26          Cro/C1-type HTH DNA-binding domain
     0.0074   15.8   0.1       0.28   10.8   0.0    3.2  4  HTH_24          Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
       0.13   12.1   0.0       0.54   10.2   0.0    2.0  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.9     1e-17   2.3e-14       3      60 ..       6      63 ..       5      66 .. 0.95
   2 ?   -0.1   2.8      0.53   1.2e+03      21      60 ..     192     230 ..     177     233 .. 0.74
   3 ?   -3.4   0.1       5.9   1.3e+04      44      61 ..     336     353 ..     331     354 .. 0.76
   4 ?    1.7   0.0      0.14   3.2e+02       3      27 ..     364     388 ..     362     389 .. 0.87

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 1e-17
      HTH_31  3 GalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpae 60
                G +++++R  aG++q+++A+r+gv++s++s +E+Grr++ +++ l ala alg+++ +
  KIR61824.1  6 GLRVARWRDVAGMTQQQLADRVGVTASYISMIESGRRPVTKRSRLIALASALGVSVTD 63
                899***********************************99**************9875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.53
      HTH_31  21 AerlgvsestlsrlEqGrrgrpspavlealaralgldpae 60 
                 A++    +s ls    G r r+s+av +++a+ lg ++++
  KIR61824.1 192 AAAFAAAQSALSSGTHGGR-RRSLAVATRAAERLGDTGDD 230
                 3344466777777778999.89*********999966665 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 5.9
      HTH_31  44 pavlealaralgldpaer 61 
                  +++ a+++a +++pae+
  KIR61824.1 336 DRAILAFLEADNASPAEL 353
                 567888888888888886 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.14
      HTH_31   3 GalLralReraGLsqeevAerlgvs 27 
                 G+ +r++R+r    ++++A r+gv 
  KIR61824.1 364 GQMVRDARRRGTPELRDLATRIGVD 388
                 8999999999999999999999985 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   3.7e-15   8.4e-12       5      55 .]      13      64 ..       9      64 .. 0.89
   2 ?   -1.0   0.0      0.87   1.9e+03      13      23 ..     379     389 ..     368     389 .. 0.83

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 3.7e-15
                HHHTTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3  5 RkqlglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvsldel 55
                R+ +g++q++LA+++Gv+ s+is+iE+G +     ++l++la aLgvs ++l
  KIR61824.1 13 RDVAGMTQQQLADRVGVTASYISMIESGrRPVTKRSRLIALASALGVSVTDL 64
                5558************************76667779************9876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.87
                 HHHHHHHTSSH CS
       HTH_3  13 eeLAeklGvsr 23 
                 ++LA ++Gv +
  KIR61824.1 379 RDLATRIGVDP 389
                 799*****975 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   7.6e-15   1.7e-11       3      59 ..       8      64 ..       6      68 .. 0.94
   2 ?   -0.6   0.0      0.64   1.4e+03       1      25 [.     364     388 ..     364     390 .. 0.83

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 7.6e-15
      HTH_19  3 rLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyl 59
                r+ + R  +g+tq++la+r+g++ s+is+iE+g++ v+++++l ++a alg++++ l
  KIR61824.1  8 RVARWRDVAGMTQQQLADRVGVTASYISMIESGRRPVTKRSRLIALASALGVSVTDL 64
                88999999*********************************************9876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.64
      HTH_19   1 GerLkeaReelgltqeelaerlgis 25 
                 G++++ aR+     +++la r+g++
  KIR61824.1 364 GQMVRDARRRGTPELRDLATRIGVD 388
                 8899999998888889999988886 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.2e-06    0.0048      14      42 ..      11      39 ..       7      40 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.2e-06
                HHHHTTT--HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4 14 elrfgeglTleEIgerlgiSrerVrqiek 42
                + r + g+T++++++r g++ + +++ie+
  KIR61824.1 11 RWRDVAGMTQQQLADRVGVTASYISMIES 39
                456699*********************96 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.1e-06     0.016      22      75 ..       8      61 ..       3      62 .. 0.93
   2 ?   -3.5   0.0       4.9   1.1e+04      36      49 ..     190     203 ..     178     208 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.1e-06
                HHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTTEEE CS
      HTH_37 22 aiaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalGqkv 75
                ++a+ ++  + +q+++a + g++ + +s ++ g+      ++L+ l+ alG  v
  KIR61824.1  8 RVARWRDVAGMTQQQLADRVGVTASYISMIESGRRPVTKRSRLIALASALGVSV 61
                67889999*******************************************987 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.9
                 HHHHHHT--HHHHH CS
      HTH_37  36 eaaqllgiaqPkvs 49 
                  aa+++  aq+ +s
  KIR61824.1 190 VAAAAFAAAQSALS 203
                 57888888888887 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.1e-05     0.024      10      57 ..      17      64 ..      14      66 .. 0.94
   2 ?   -2.7   0.0       3.7   8.2e+03       4      19 ..     112     128 ..     111     133 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
      HTH_26 10 gitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDL 57
                g+t+++La ++g++a+ +s + +g+    + ++L +++ aLg+++ DL
  KIR61824.1 17 GMTQQQLADRVGVTASYISMIESGRRPVTKRSRLIALASALGVSVTDL 64
                8***********************9767788****************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.7
      HTH_26   4 elmadrgi.tkseLarg 19 
                 ++ma+r    ++ Lar 
  KIR61824.1 112 QAMAARMAcDYKALARL 128
                 56777777799999986 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00012      0.28      16      34 ..      16      34 ..      16      36 .. 0.89
   2 ?   -3.3   0.1         3   6.8e+03      23      31 ..      53      61 ..      52      62 .. 0.86
   3 ?    0.4   0.0      0.22   4.9e+02       4      15 ..     335     346 ..     334     352 .. 0.87
   4 ?   -1.6   0.0      0.94   2.1e+03      21      30 ..     379     388 ..     378     389 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
      HTH_24 16 prisqreLAerlglSpstv 34
                ++++q++LA+r+g++ s +
  KIR61824.1 16 AGMTQQQLADRVGVTASYI 34
                689***********99865 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3
      HTH_24 23 LAerlglSp 31
                LA +lg+S+
  KIR61824.1 53 LASALGVSV 61
                999****98 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.22
      HTH_24   4 tdrkILelLqkn 15 
                  dr+IL  L+++
  KIR61824.1 335 QDRAILAFLEAD 346
                 79*******996 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.94
      HTH_24  21 reLAerlglS 30 
                 r+LA r+g+ 
  KIR61824.1 379 RDLATRIGVD 388
                 89******86 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00024      0.54      10      48 ..      19      58 ..      15      65 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00024
  YdaS_antitoxin 10 gqkaLAealgvsqqaVsqWlkgkkq.vpaervpeIekatn 48
                    +q++LA+++gv+ + +s+  +g+++     r +++  a +
      KIR61824.1 19 TQQQLADRVGVTASYISMIESGRRPvTKRSRLIALASALG 58
                    699****************99*999445567777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2729.23
//
Query:       KIR61825.1  [L=399]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-09   38.0   3.5    1.6e-09   38.0   3.5    4.9  4  HTH_31    Helix-turn-helix domain
    5.2e-05   23.2   0.1    0.00032   20.7   0.0    2.3  2  HTH_3     Helix-turn-helix
     0.0052   16.8   0.0      0.012   15.6   0.0    1.7  1  HTH_19    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   3.5   2.6e-13   1.6e-09       3      59 ..      10      66 ..       8      70 .. 0.94
   2 ?   -3.2   6.6         2   1.2e+04      49      62 ..     202     215 ..     165     234 .. 0.61
   3 ?   -3.3   8.8       2.1   1.2e+04      17      61 ..     297     340 ..     269     368 .. 0.83
   4 ?   -2.5   0.1       1.1   6.7e+03      42      56 ..     384     398 ..     376     399 .] 0.75

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 2.6e-13
      HTH_31  3 GalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpa 59
                G++++ +R r++Lsq+ +A+rlg s+s++ ++E+G r + + ++l  +a +l+ d a
  KIR61825.1 10 GRRVAYWRGRRRLSQQMLADRLGKSKSWVDKVERGVRALDRVSTLHDIAAVLRIDAA 66
                999999**********************************************99976 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2
      HTH_31  49 alaralgldpaera 62 
                 +l +al++++  ra
  KIR61825.1 202 QLGQALRASGRARA 215
                 33333333333222 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.1
      HTH_31  17 qeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaer 61 
                 + +vA  lg  ++ +++ E+ +r r  +++l a  ra  l +a r
  KIR61825.1 297 RVAVAVELGAARAAVTWHERTTR-RDAWRWLPAEHRAAHLLDAAR 340
                 5689****************999.898887755444444433333 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.1
      HTH_31  42 pspavlealaralgl 56 
                   pa++ +la alg+
  KIR61825.1 384 HAPATIVQLALALGV 398
                 567888999999987 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   5.4e-08   0.00032       4      52 ..      16      65 ..      13      68 .. 0.82
   2 ?   -0.8   0.0      0.28   1.7e+03      40      51 ..     388     399 .]     385     399 .] 0.65

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 5.4e-08
                HHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCS.BHHHHHHHHHHHTSEH CS
       HTH_3  4 lRkqlglsqeeLAeklGvsrstisriEnGernP.sletlkklakaLgvsl 52
                +R  + lsq++LA++lG s+s + + E+G r+  +++tl  +a +L ++ 
  KIR61825.1 16 WRGRRRLSQQMLADRLGKSKSWVDKVERGVRALdRVSTLHDIAAVLRIDA 65
                677889***********************555516888888888888876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.28
                 HHHHHHHHHTSE CS
       HTH_3  40 tlkklakaLgvs 51 
                 t++ la aLgv+
  KIR61825.1 388 TIVQLALALGVT 399
                 666777777764 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.1e-06     0.012       1      60 [.      10      69 ..      10      74 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.1e-06
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aelllkiaealgidleyll 60
                G+r+   R  + l+q++la+rlg s+s   + E g +  ++  ++l +ia  l id+  ll
  KIR61825.1 10 GRRVAYWRGRRRLSQQMLADRLGKSKSWVDKVERGVR-ALDrVSTLHDIAAVLRIDAAVLL 69
                8999999****************************99.77779999999999888876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2529.56
//
Query:       KIR61826.1  [L=637]
Description: heat shock protein 90 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.9e-135  452.1   0.0   3.8e-129  431.9   0.0    2.0  2  HSP90        Hsp90 protein
    7.6e-13   48.5   0.1    1.8e-12   47.3   0.1    1.7  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
    2.9e-11   43.9   0.0    5.1e-11   43.1   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HSP90  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   2.4e-08   0.00014       1      38 [.     192     229 ..     192     232 .. 0.87
   2 !  431.9   0.0  6.4e-133  3.8e-129      72     486 ..     225     634 ..     220     637 .] 0.94

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.4e-08
                 GGGSHHHHHHHHHHCCTTSSS-EEEEEEEEXXXXXXXX CS
       HSP90   1 eyleekklkelvkkySeFinfpiyllkekeeekeveee 38 
                 +y+ e k++e+vk+yS+Fi +pi++++e++ e ++++ 
  KIR61826.1 192 DYTAEWKIREIVKRYSDFIAWPIRMTVERKGEGDETTR 229
                 7999**********************999888776644 PP

  == domain 2  score: 431.9 bits;  conditional E-value: 6.4e-133
                 XXXEEEEEEESXXSXGGGSXGGGSXHHHHHHHHHHTTTTTSXXSEEEEEEEXSSSXEEEEEEEXSSXXTTTTTTTTTSXXTTEEEEETTEEEESXXTTS CS
       HSP90  72 ketvkewellNkqkpiWlrkpkevteeeYkeFYkslskdsedplavkhfsaegevefkaiLfvPkrapsdlfekykkkkknnikLYvrrVfitdefedl 170
                 +et+ e ++lN+ k++W r+++ev+e eYkeFYk +s+d+ dpl ++h + eg  e++a+Lf+P++ap dlf     + ++ ++LYv+rVfi+d++e l
  KIR61826.1 225 DETTREAQTLNSMKALWARPRSEVDEAEYKEFYKHVSHDWADPLETIHMRGEGTFEYEALLFLPSHAPVDLFAP---QARRGVQLYVKRVFIMDDCEAL 320
                 68999********************************************************************6...67999***************** PP

                 SXGGGTTXEEEEEESSSXSSSTHHHHHTCHHHHHHHHHHHHHHHHHHHTSXH.HH..HHTHHHHHHHHHHHHHHHXGGGHHHHHTTXEEEETTEEEEEE CS
       HSP90 171 lPkyLsFvkGvvdsddLPLNvsREtlqqnkilkvikkklvrKvlemlkklae.ekeeykkfykefsknlklGiiedsanrkklakLlrfksskseeelt 268
                 +P+yL+FvkGvvd+ dL LN+sRE+lqq++ ++ ++++lv+K+l ++k+l+  e e+y++f++ef+  lk G+++d  n + + +++   s+++  elt
  KIR61826.1 321 MPNYLRFVKGVVDAHDLSLNISREILQQDRQIQAVRRRLVKKILATVKELKAnEAEKYRTFWSEFGPALKEGLLDDPDNTDAILDVVSVASTHDPAELT 419
                 **************************************************6515678****************************************** PP

                 EHHHHHHHSXTTXXEEEEEEXSSHHHHHTSGGGHHHHHTTXXEEEEXSTTHHHHHHTXSEETTEEEEETTBSTXXXXXXHHHHH...HHHHHHHHHHHH CS
       HSP90 269 sLedYvermkekqksiYyiageskeevekspflerlkkkgyevlylvdpiDeyvvqqlkeyegkklvnvakegleleeeeeekk...kkeelkkkfeel 364
                  L+dYvermk++q++iYy++ges++ +e+sp +e++++kgyevl l+dp+De+ v+++ +++gk l ++ak +++l++eee+k+   ++e++++++ +l
  KIR61826.1 420 GLRDYVERMKDGQSDIYYMTGESRSMIENSPHMEAFRAKGYEVLILTDPVDEVWVERVGQFDGKPLRSIAKGQVDLDTEEEKKEaesAREQQRQEYADL 518
                 ****************************************************************************7555555411156778999**** PP

                 HHHHHHTTTTTESEEEEXSSXSSXSEEEEBXTTSXXHHHHHHHHHHHHHHHSSTSSSSSXEEEEEXTTSHHHHHHHHHHHHTTTXHHHHHHHHHHHHHH CS
       HSP90 365 tkllkevlkdkvekvkvserlvdsPcvlvtseygwsanmerimkaqalrdkskssymsskktleinprhpiikeLkkkveedkedeeakdlaellyeta 463
                 +++++e l d+v++v++s+rl++sP+++v + + +++++e++ +a  ++      + + k++le+np hp+++ L+k  e+d++ + + d+aelly  a
  KIR61826.1 519 LTWMSEKLADSVKEVRLSTRLTTSPACVVGDAHDITPTLEKMYRAMGHE------VPQVKRILELNPGHPLVEGLRKAHEQDATADGLADTAELLYGMA 611
                 ********************************************98875......444589************************************** PP

                 HHHTTXXXSXHHHHHHHHHHHHT CS
       HSP90 464 llesGfsledpasfakrierllk 486
                 ll+ G +l+dp++f++ + + l 
  KIR61826.1 612 LLAEGGELADPSRFTRVLADRLA 634
                 **************998877665 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.1     3e-16   1.8e-12       6     106 ..      32     158 ..      26     185 .. 0.77

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 3e-16
  HATPase_c_3   6 AlaelvdNsldAdaen..................vkievnknrgktgeivieDdGkGmseeelkn.alrlatsskeak....r.......kstslGkk 73 
                   l el+ N+ dA  +                   ++iev+++   + +++++D+G Gms+e++ +   ++a+s + +     r       +++ +G++
   KIR61826.1  32 FLRELISNASDALDKLrleslvdkdlaadvsdlhIEIEVDRD---ARTLTVRDNGIGMSREDVVRlIGTIAKSGTAELlaklReskdsaaSADLIGQF 126
                  577999999998766678889999999999997777777776...58******************55589999888554444233333334555**** PP

  HATPase_c_3  74 GiGlklAslslgkkltvitkkegesstltldvd 106
                  G+G + A++++++++t+ t+  ges+ ++++ +
   KIR61826.1 127 GVG-FYATFMVADRVTLLTRRAGESEGTRWEST 158
                  ***.*********************99988764 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   8.6e-15   5.1e-11       2     111 ..      29     184 ..      28     185 .. 0.63

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 8.6e-15
                 HHHHHHHHHHHHHHHHHHH..........HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT............GTCSTTCH...........HCST CS
   HATPase_c   2 dekrLrqiisnlvdNavkf..........atkageieveikaseddlvisveDnGiGipkedlk............klfekfsq...........ddst 67 
                 +  +Lr++isn++d+++k           a++ +++++ei+++ d  +++v+DnGiG+++ed+             +                  ++++
  KIR61826.1  29 KDVFLRELISNASDALDKLrleslvdkdlAADVSDLHIEIEVDRDARTLTVRDNGIGMSREDVVrligtiaksgtaE------LlaklreskdsaASAD 121
                 6689***************888877766644444445555554789******************7666666555553......0445555766566677 PP

                 CHTSTSSSH..HHHHHHHHHHH..............TT.TEEEE..EEET..TTEEEEEEEEESS CS
   HATPase_c  68 krggggtGl..Glsivkklvel..............mg.Geiwv..esep..grGttftftlple 111
                  +g++g+G+   ++++++++ l               g G+ +v     +   +Gt +t++l+ e
  KIR61826.1 122 LIGQFGVGFyaTFMVADRVTLLtrragesegtrwesTGeGTYSVetV--DdaPQGTAVTVHLKPE 184
                 77778888764444444433334444443333333222244444333..24478*******9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1008  (0.0562218); expected 358.6 (0.02)
Passed bias filter:                      705  (0.0393218); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 4192.05
//
Query:       KIR61827.1  [L=174]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-11   45.2   0.0    1.8e-11   44.9   0.0    1.2  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
    2.4e-09   37.5   0.0    2.9e-09   37.2   0.0    1.3  1  Acetyltransf_1  Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0     2e-15   1.8e-11      37     136 ..      45     153 ..      11     155 .. 0.77

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 2e-15
  Acetyltransf_3  37 aeewlera.......waeeseeeg.........ygwaivlkdtgviGsvglrdleeedee.....aelgymlapsfwgkGyateavralleyafe 110
                       +w++r                          y w++  +d++v+G + lr+      +     +++gy ++ps++++G+at a+  +l+ a +
      KIR61827.1  45 FAAWVARLveapapdK-------PpaaervrctYRWIV--EDDRVLGGIALRHELTG--FllrvaGQIGYGIRPSARRRGLATWALGRMLDEA-R 127
                     5566665433333221.......222333444477999..56658999988844444..345899****************************.9 PP

  Acetyltransf_3 111 elglerlvavidkeNeaSirvleklG 136
                     +lgl+r+ ++++++N aS+r +e+ G
      KIR61827.1 128 TLGLDRVLITCQPDNVASARTIERHG 153
                     ***********************998 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   3.2e-13   2.9e-09      31     116 ..      67     153 ..      14     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 3.2e-13
                     TTCEEEEEEETTEEEEEEEEEEEET...TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTT CS
  Acetyltransf_1  31 eaegllvaeedgeliGfisllkipd...ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklG 116
                       +++  + ed++++G i l+       +  +va  +++ ++p++r++Gl++  l  ++++ar  g++++ +++++dn+a+ r  e++G
      KIR61827.1  67 VRCTYRWIVEDDRVLGGIALRHELTgflL--RVAGQIGYGIRPSARRRGLATWALGRMLDEARTLGLDRVLITCQPDNVASARTIERHG 153
                     34422224588899999988888776643..556666********************************888************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       191  (0.0106531); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1215.56
//
Query:       KIR61828.1  [L=197]
Description: permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-58  196.2   1.9    3.7e-58  196.0   1.9    1.0  1  DUF4956   Domain of unknown function (DUF4956)
  ------ inclusion threshold ------
      0.039   13.7   0.1      0.057   13.2   0.1    1.3  1  SurE      Survival protein SurE
        2.6    7.7   6.8         47    3.6   6.7    2.1  1  Wzy_C     O-Antigen ligase


Domain annotation for each model (and alignments):
>> DUF4956  Domain of unknown function (DUF4956)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.0   1.9   6.2e-62   3.7e-58       1     172 []      10     177 ..      10     177 .. 0.99

  Alignments for each domain:
  == domain 1  score: 196.0 bits;  conditional E-value: 6.2e-62
     DUF4956   1 dlvavlilvrglYykrhrrrdlvftflllnvgvfavvlllasvevsiglglGLfgvlsilRlRseeisvrevtYlFvaialglinglaslslvellvln 99 
                 +lvav +lv++lY++rhrrrdlv+++l++nvgvfav++ l+s +v++glglGLfgvlsi+RlRs+e++++ev+Y+F a+alg++  l+ +s+++++ l+
  KIR61828.1  10 NLVAVGLLVFALYFPRHRRRDLVVAYLGVNVGVFAVASSLSSGTVGAGLGLGLFGVLSIIRLRSTELDQHEVAYYFSALALGILGPLSGTSIWTVAGLT 108
                 79************************************************************************************************* PP

     DUF4956 100 vlivlvlallesprllkkerrklvtldrieliapedeeeliadleerlglkvteveveeidfvrdtavlevrY 172
                 +li++v+++ ++prll+++rr++++ld+    + +d+ +l+a+le++lg++v+  +ve+id+v+dt+v++vrY
  KIR61828.1 109 ALILAVMYVGDHPRLLRRYRRHVMVLDT----VLTDPVALTAHLEQQLGARVHAANVERIDLVNDTTVVDVRY 177
                 ***************************9....****************************************9 PP

>> SurE  Survival protein SurE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   9.5e-06     0.057      85     122 ..      23      66 ..       5      87 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.5e-06
                 S.....SSEEEE..EEEES---GGGGGG-HHHHHHHHHHHTTSE CS
        SurE  85 k....kpdlVvS..GiNhGaNlgtdvlySGTvgAaleaalegip 122
                 +    + dlVv+  G+N G  + ++ l+SGTvgA l   l g+ 
  KIR61828.1  23 FprhrRRDLVVAylGVNVGVFAVASSLSSGTVGAGLGLGLFGVL 66 
                 1323467****988********************8766565555 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   6.7    0.0079        47      19      58 ..       9      46 ..       1     170 [. 0.72

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0079
       Wzy_C 19 iigllvalivlliifykrripfllllgilvgvilliilfv 58
                +  ++v+l+v+ + f++ r+  + l+++++gv +++  ++
  KIR61828.1  9 MNLVAVGLLVFALYFPRHRR--RDLVVAYLGVNVGVFAVA 46
                44558888888888888888..444444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1475.10
//
Query:       KIR61829.1  [L=146]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-39  135.2  14.0    1.8e-39  135.1  14.0    1.0  1  DUF4395   Domain of unknown function (DUF4395)
  ------ inclusion threshold ------
       0.24   12.0   1.1         19    5.9   0.0    2.2  2  TMEM141   TMEM141 protein family
        5.7    7.5   5.6        5.9    7.4   0.7    2.2  2  DUF4231   Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> DUF4395  Domain of unknown function (DUF4395)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1  14.0     3e-43   1.8e-39       2     130 .]       4     131 ..       3     131 .. 0.98

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 3e-43
     DUF4395   2 deravRfnaalvvvllvlalltgapwllallavvfalralagprlsplgllarrlvaprlgpkpeledaapkrFAqliGlvfllvalvlfllgapvlgl 100
                 d+r++Rf+aa+++v+l++al+ g+ +l++++avvfa++a+ +prl p+ l +r+lvaprl p++e+e+aap rFAql+Gl+f+l+a+v++l+g+p+l+l
  KIR61829.1   4 DPRGPRFAAAVTTVVLAAALIAGSLALVLTQAVVFAVTAA-SPRLGPYTLAYRALVAPRLDPPAEREPAAPVRFAQLVGLAFMLLAAVGHLAGLPALAL 101
                 99*************************************9.68******************************************************** PP

     DUF4395 101 vltalllvaafleaafgfClGCllYlllkr 130
                  +ta++l+aafl+aaf+fClGC+ Yl l+r
  KIR61829.1 102 TATAAALAAAFLNAAFDFCLGCEAYLALRR 131
                 **************************9987 PP

>> TMEM141  TMEM141 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2    0.0068        41      23      62 ..      20      59 ..      10      62 .. 0.90
   2 ?    5.9   0.0    0.0031        19      18      54 ..     104     140 ..      94     143 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0068
     TMEM141 23 srallkGlatfvlgtaaafflqklvkkklpyplkwnllvs 62
                + al+ G  + vl  a +f++  +  +  py+l +  lv+
  KIR61829.1 20 AAALIAGSLALVLTQAVVFAVTAASPRLGPYTLAYRALVA 59
                67999****************9999999999999999986 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0031
     TMEM141  18 YaeCqsrallkGlatfvlgtaaafflqklvkkklpyp 54 
                  a+  + a+l+  + f+lg  a ++l++l  + +p++
  KIR61829.1 104 TAAALAAAFLNAAFDFCLGCEAYLALRRLTGRPVPAR 140
                 5677899******************999998877765 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.4      0.03   1.8e+02      44      65 ..       9      30 ..       3      51 .. 0.65
   2 ?    7.4   0.7   0.00099       5.9      23      77 ..      77     130 ..      70     133 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.03
     DUF4231 44 svlkiltallsalvailaalee 65
                ++++++t+++ a++ i  +l  
  KIR61829.1  9 RFAAAVTTVVLAAALIAGSLAL 30
                5555666666666666655543 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00099
     DUF4231  23 itivlgallpilvssklgagvsvlkiltallsalvailaaleeffrykerWrryR 77 
                 + +v+ a+  ++++    ag ++l+++++++++++a+l+a   f+   e + + R
  KIR61829.1  77 AQLVGLAFMLLAAV-GHLAGLPALALTATAAALAAAFLNAAFDFCLGCEAYLALR 130
                 45555444444444.478999******************9998887666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1098.22
//
Query:       KIR61830.1  [L=175]
Description: flavin reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-37  128.1   0.3    3.3e-37  127.9   0.3    1.0  1  Flavin_Reduct  Flavin reductase like domain


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.9   0.3   1.8e-41   3.3e-37       2     154 ..      23     166 ..      22     167 .. 0.96

  Alignments for each domain:
  == domain 1  score: 127.9 bits;  conditional E-value: 1.8e-41
                    TTS-EE-EEEEE.EETTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBCCGHHHHHHTCS...SCCCCCCCCC.CCEEECT CS
  Flavin_Reduct   2 rrvaqpvavvttsvpptsplgatlssftslsldPplvafslrlpsstadalkeagefvinllsesqealadafsqksgprtddksifa.gltwees 96 
                    r+ a+ v+vvt+  p+  p g+t++sfts+sl+Pp+v+f+l+l+ss +  +++a++++++ll+++q++la+ f++     + d+  fa ++ w+ +
     KIR61830.1  23 RQQASTVTVVTA--PGATPVGFTATSFTSVSLEPPVVSFCLGLASSAWPTVARARHVAVHLLAQHQRDLARTFAA----TGIDR--FAhPTRWRVG 110
                    667999******..*************************************************************....68899..**9******* PP

                    CCCSEEETTCSEEEEEEEEEEECCTTEEEEEEEEEEEEESTTECTTBEECCCCCEEEE CS
  Flavin_Reduct  97 ptgapallgalasleCqvvgsvelgdhelfigeVvavkvgddadeepLlywrrryagl 154
                    p+++p+l++a+a+l C+vv++v +gdh ++++e +  ++ +   ++pLly+r+ yag+
     KIR61830.1 111 PEAVPILDDAPAWLLCRVVDRVVVGDHAIVLAEPELLRHAEV--GSPLLYHRGGYAGV 166
                    *************************************99997..46**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1312.77
//
Query:       KIR61831.1  [L=347]
Description: iron ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-32  112.3   0.0    3.1e-32  111.9   0.0    1.1  1  SBP_bac_6   Bacterial extracellular solute-binding protein
    5.7e-20   72.3   0.2    7.7e-20   71.8   0.2    1.1  1  SBP_bac_8   Bacterial extracellular solute-binding protein
    1.3e-19   70.9   3.2    1.7e-19   70.5   3.2    1.1  1  SBP_bac_11  Bacterial extracellular solute-binding protein
    4.8e-13   49.7   2.4    6.8e-13   49.2   2.4    1.2  1  SBP_bac_1   Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   6.9e-36   3.1e-32       3     235 ..      87     322 ..      85     328 .. 0.94

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 6.9e-36
   SBP_bac_6   3 lpdlilsfdkdflekfieeglfqpldpanlpnvnkdfaeeglkdpdgkyypygvgplvlavnkdrlkgrpvPksWaDLldPeykgkvalpgnngsdlfe 101
                  +d++++ d  +l+   ++glf++l+++ l++v+     + ++   g++++++    vla+n+d++++ ++Pks  +L+dP++kgkv++  +n  ++f+
  KIR61831.1  87 PADVFFAQDAGALGAVTKAGLFAALPQDLLDRVP-----AAYRAAGGQWVGVSGRSRVLAYNADQVTKGQLPKSVFELTDPTWKGKVGVAPTN--GSFQ 178
                 69********************************.....****************************************************99..6*** PP

   SBP_bac_6 102 alllalykdfgedgvkkllrnlkanlhpaq..mvkaagslesgepavsvvpyffadilpekkkgk......nlkvvwPed.Galvspifmlvkkg.kkk 190
                 a++ al+ ++g +++k++l  lkan  +++  +v++++  ++g+ a+ +v +++   l++  +g+      +l++  + d G+lv+   + + +   ++
  KIR61831.1 179 AFVTALRVQHGDAKAKEFLTGLKANEPQIRegNVQIVADIDAGKLAAGLVNHYYVYELAKERGGDpatlkaQLHFFPDGDtGGLVNAAGVGLLTRaGTD 277
                 *************************************************************9999****99999999999****9998887777777** PP

   SBP_bac_6 191 elakafidfllspevqailakaggvfPvvtnpavlnelpegaklk 235
                 ++a+a++d+ll+ e+q+ +a +++++P ++ +++++ lp+ a l 
  KIR61831.1 278 PDARALVDYLLGTEAQTHFATQTFEYPLTAGVPAAPGLPQLADLA 322
                 ****************************98888888877766665 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.2   1.7e-23   7.7e-20       3     275 ..      54     316 ..      53     324 .. 0.82

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 1.7e-23
                 HHHHHHH-TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH-HHHHHTT--TS.----EEEEEEE-EEEEEH CS
   SBP_bac_8   3 akefekktgvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnlddltdalaavgydgklygvPyasetpyvliynk 101
                  ++fek+ g++v v + ++++++++l  +   g  p+ + + ++++al++  ++gl+a+l + d ld +++a++a+g+ +   gv   s+++ vl+yn+
  KIR61831.1  54 LEKFEKSSGITVDVRYGSTAQMAAQLLEEG--GRSPADVFFAQDAGALGAVTKAGLFAALPQ-DLLDRVPAAYRAAGGQW--VGV---SGRSRVLAYNA 144
                 689*************************86..66666444788899***************7.99**********99777..444...45668****** PP

                 HHHHHS.---BHHHHHHHHHHHHHH-SEGG---GGGGGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE.-S..--SSTTTTTSBSEEEE-TTH CS
   SBP_bac_8 102 dllekaedpktwdellaaakklkgkfglpdpasgwlqaallakdgksldddggkdglkealellkklkdngkty.dtgadavsefanGevaftingswd 199
                 d + k + pk++ el++  +++kgk+g  +p++g++qa+ +a + ++  d       ++a e+l+ lk+n  ++ + + ++v+++  G+ a+++     
  KIR61831.1 145 DQVTKGQLPKSVFELTD--PTWKGKVG-VAPTNGSFQAFVTA-LRVQHGD-------AKAKEFLTGLKANEPQIrEGNVQIVADIDAGKLAAGLVNHYY 232
                 ****835**********..********.679***********.8666654.......7999**********98845667***************87777 PP

                 HHHHH-T.TT...SEEEE...--..S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---BS-S-TTTHHHHH CS
   SBP_bac_8 200 iaaaqka.gk...klgai...vp..kqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektgyipvnksaalspevk 275
                 +  ++k+ g    +l+a    +p   +g +++++g+  ++ a+     A +++ +l+  e+q+ +a++t   p + ++++ p + 
  KIR61831.1 233 VYELAKErGGdpaTLKAQlhfFPdgDTGGLVNAAGVGLLTRAGTDPD-ARALVDYLLGTEAQTHFATQTFEYPLTAGVPAAPGLP 316
                 66666554643456666654345654579999999887776665553.99***********************999999876554 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   3.2   3.7e-23   1.7e-19       1     229 [.      39     301 ..      39     302 .. 0.87

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 3.7e-23
                 .EEEE-SSTHHHHHHHHHHHHHHH---EEEEESSHHHHHHHH..HHH...-SEEEESSH.HHHHHHHHGGGGG.................GG-EEEEEE CS
  SBP_bac_11   1 ltvaaagslaaalrelaaaFeahtgvkvevsaggsgklarqi..adga.rpDvwipassawlellaaaglvqa.................esavplass 79 
                 lt++++ s ++ ++ + ++Fe+ +g++v+v++g+ +++a+q+  ++g+ ++Dv+++ ++++l ++ +agl +a                 ++ v + + 
  KIR61831.1  39 LTIYSGRS-ETLVKPVLEKFEKSSGITVDVRYGSTAQMAAQLleEGGRsPADVFFAQDAGALGAVTKAGLFAAlpqdlldrvpaayraagGQWVGVSGR 136
                 56777777.99*******************************6444449***********************9*****999988888888777788888 PP

                 EEEEEESTT-...TT---SHHHHHHSS-..-EEEE--T-TTTTHH.HHHHG.GG--...HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SEEEEEHHHH CS
  SBP_bac_11  80 plviavpkgn...pkkikgwadLlkpgl..klavadPttspsGlaalalle.aaga...qellkalekkvvklgessrqlltaveageadagivyesea 169
                   v+a++++     + +k++ +L++p +  k++va   t++s +a +++l+ ++g+   +e+l+ l+ + ++ +e+  q++++++ag+ +ag+v+   +
  KIR61831.1 137 SRVLAYNADQvtkGQLPKSVFELTDPTWkgKVGVAP--TNGSFQAFVTALRvQHGDakaKEFLTGLKANEPQIREGNVQIVADIDAGKLAAGLVNHYYV 233
                 888888888865555799**********888**996..99***********8444466689************************************99 PP

                 H..HSTTSSEEEE--TTT--...........EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHTT- CS
  SBP_bac_11 170 kaaengdkleavylpeglnl.d.......pldypaavlkkaakreaAraFlafLrspeaqailrkyGf 229
                 +  +++ +++  +l+++l++ +         + ++++l++a+    Ara++++L++ eaq+ ++ + f
  KIR61831.1 234 YELAKERGGDPATLKAQLHFfPdgdtgglVNAAGVGLLTRAGTDPDARALVDYLLGTEAQTHFATQTF 301
                 888888888888888888876577777665577888999999*******************9987665 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   2.4   1.5e-16   6.8e-13       6     314 ..      47     293 ..      42     294 .. 0.75

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 1.5e-16
                 HHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEE.CGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHC CS
   SBP_bac_1   6 egaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviav.dndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkild 103
                 e  +l ++v ++fek   gi+V + ++++ ++a   +l  ++G+ paDv++  d + ++   kagl++ l  ++ +  +  +  aa      +      
  KIR61831.1  47 E--TLVKPVLEKFEK-SSGITVDVRYGSTAQMAA--QLLEEGGRSPADVFFAqDAGALGAVTKAGLFAALPQDLLDRVPAAYR-AAGGQ---W------ 130
                 4..8999**9*****.78*********9999999..9999*************999999*9*********9999999544432.22222...3...... PP

                 EEEESEEEEE.EEEEEEETTTHHCTTGGG......SHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHS CS
   SBP_bac_1 104 skvlyvPlya.argliYNkdlfekagldp......pwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvt 195
                      v + + +r+l+YN d + k +l+        +tW+         ++ g +p        +s +a+++al++  + +                  
  KIR61831.1 131 -----VGVSGrSRVLAYNADQVTKGQLPKsvfeltDPTWK---------GKVGVAP------TNGSFQAFVTALRVQHGDA------------------ 191
                 .....334455************76665555666666777.........3333333......5667777777766555555.................. PP

                 HHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE.EEEEEEEEBT CS
   SBP_bac_1 196 aatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi.lgayglaipk 293
                         +a+++lt  +++ +   +++ + +a++ aG+ a+++v +++++  +   ++++ ++++   k  l+++p     +g +g+ ++a g+++++
  KIR61831.1 192 --------KAKEFLTGLKANEPQIREGNVQIVADIDAGKLAAGLVNHYYVYELA---KERGGDPATL--KAQLHFFP-----DGDTGGlVNAAGVGLLT 272
                 ........66667777777777777777777777889**********9965554...2222233333..33556666.....6666668********** PP

                 TCSTHHHHHHHHHHHTSHHHH CS
   SBP_bac_1 294 gsknpeaAkkFldfllspeaq 314
                  +     A++++d+ll+ eaq
  KIR61831.1 273 RAGTDPDARALVDYLLGTEAQ 293
                 *******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2262.96
//
Query:       KIR61832.1  [L=361]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-30  105.9   0.0    3.2e-30  105.4   0.0    1.2  1  ABC_tran     ABC transporter
    6.4e-08   32.7   1.1    6.4e-08   32.7   1.1    3.1  3  TOBE_2       TOBE domain
    3.1e-07   30.5   0.0     0.0035   17.2   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00014   22.3   1.9    0.00052   20.4   1.9    2.0  1  AAA_16       AAA ATPase domain
    0.00058   19.3   0.0      0.033   13.6   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
     0.0039   17.5   0.1      0.018   15.3   0.0    2.0  2  AAA_22       AAA domain
  ------ inclusion threshold ------
      0.016   15.4   0.2       0.22   11.7   0.2    2.5  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
      0.043   14.2   0.1       0.15   12.5   0.1    1.8  2  AAA          ATPase family associated with various cellular a
      0.052   13.5   0.1       0.11   12.5   0.1    1.4  1  Rad17        Rad17 P-loop domain
      0.053   13.1   2.0       0.14   11.7   2.0    1.9  1  AAA_25       AAA domain
      0.065   12.9   4.0      0.042   13.6   1.1    2.3  2  AAA_30       AAA domain
      0.078   13.5   0.0       0.12   12.9   0.0    1.1  1  AAA_23       AAA domain
      0.079   12.9   0.1       0.15   12.0   0.1    1.4  1  NACHT        NACHT domain
       0.14   12.3   0.7       0.56   10.4   0.7    2.2  1  AAA_33       AAA domain
       0.16   11.9   0.0       0.27   11.1   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
       0.17   12.2   4.8        0.1   12.9   1.0    2.6  3  TOBE         TOBE domain
        0.2   10.4   0.3         13    4.4   0.0    2.8  2  ABC_ATPase   Predicted ATPase of the ABC class
        0.3   11.0   0.0        0.5   10.2   0.0    1.2  1  ATPase_2     ATPase domain predominantly from Archaea


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0   3.2e-33   3.2e-30       2     136 ..      22     163 ..      21     164 .. 0.94

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 3.2e-33
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren.........esdeeiekal 89 
                   v+l +  g+++a++G++G+GK+tLl+++ag ++ ++G + + g+++       +  r++++v+pqe  lfp+l+v++n          ++ ++e++l
  KIR61832.1  22 AGVDLAVPSGTLLAVLGPSGCGKTTLLRCVAGFERADSGAVAVAGRPVAAdrVHVPPHRRRVAVVPQEGALFPHLSVADNvgygldraaRRSGRVEEVL 120
                 6799********************************************99666677889**************************998888888***** PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + +gl +   +      ++LSgGq+qrva+aral+ +p+l+llDEp+
  KIR61832.1 121 ALVGLAGYGPRMP----HQLSGGQQQRVAVARALAPRPPLVLLDEPF 163
                 *******888877....*****************************7 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1         2     2e+03      38      50 ..     135     147 ..      95     156 .. 0.56
   2 ?   -0.8   0.2       1.8   1.8e+03      43      43 ..     219     219 ..     170     252 .. 0.57
   3 !   32.7   1.1   6.4e-11   6.4e-08       1      69 [.     290     353 ..     290     356 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2
      TOBE_2  38 elaggqlvvvrqp 50 
                 +l ggq+++v+++
  KIR61832.1 135 QLSGGQQQRVAVA 147
                 3444444444444 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.8
      TOBE_2  43 q 43 
                 +
  KIR61832.1 219 P 219
                 1 PP

  == domain 3  score: 32.7 bits;  conditional E-value: 6.4e-11
      TOBE_2   1 laiRPEklrlaaagganglsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswd 69 
                 + iRPE++rl   ++ +g  +tV++  + G++ +++++l++g+ +++r+ ++    alapG +V+++++
  KIR61832.1 290 VLIRPEQIRL---AASGGPLATVVRQDFHGHDALTTLRLDDGTVLTARTLDEG--VALAPGAQVAVTVR 353
                 68********...7767899********************************9..5*********9875 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00021      0.21       3      23 ..      35      55 ..      33      77 .. 0.81
   2 !   17.2   0.0   3.5e-06    0.0035     230     298 ..     129     195 ..     100     198 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
      AAA_21  3 vliGpNgsGKSnLLdaldlla 23
                ++ Gp g+GK++LL++  ++ 
  KIR61832.1 35 AVLGPSGCGKTTLLRCVAGFE 55
                789*************98874 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 3.5e-06
      AAA_21 230 qelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ellkelsrngaQviltTHS 298
                 +++ +++lS G+++  a++ al+ ++   +l+l+DEp + L+ +l ++l  ++  +l++ ga  +l+TH+
  KIR61832.1 129 GPRMPHQLSGGQQQRVAVARALAPRP---PLVLLDEPFSALDAQLRTELRaDVRQALRADGATAVLVTHD 195
                 55567899****99989999999988...********************98777777779999******8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   1.9   5.2e-07   0.00052      23      63 ..      30      71 ..      21     207 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 5.2e-07
      AAA_16 23 rpelvllsGesGvGKsslvrellralekd..ggiflrgkcdql 63
                ++ l+ + G+sG+GK++l+r+++  +e++  g+++++g+ +  
  KIR61832.1 30 SGTLLAVLGPSGCGKTTLLRCVAG-FERAdsGAVAVAGRPVAA 71
                347999*****************5.444433455588877665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.039        39      26      43 ..      33      50 ..      21      55 .. 0.85
   2 !   13.6   0.0   3.3e-05     0.033     113     207 ..     106     204 ..      82     214 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.039
                EEEEEESTTSSHHHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldA 43
                + a++Gp G+GK+ ll  
  KIR61832.1 33 LLAVLGPSGCGKTTLLRC 50
                5689*********99865 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.3e-05
                 ETTEEE-HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCC CS
                 xxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
       SMC_N 113 ingkevtkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemle 203
                 +++   ++  v+e+l+ +g+         +LSgG+++ va+a  +A     + pl+llDe  +aLD++ ++++   ++++     a  + ++++++   
  KIR61832.1 106 LDRAARRSGRVEEVLALVGLAGYgprmphQLSGGQQQRVAVARALA----PRPPLVLLDEPFSALDAQLRTELRADVRQALRAdgATAVLVTHDQGEAL 200
                 555555555555555555554333444449**********998877....4679**************9999888777543222366666677665544 PP

                 C-SC CS
                 xxxx RF
       SMC_N 204 kadk 207
                  +  
  KIR61832.1 201 SMAD 204
                 4444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.8e-05     0.018       5      28 ..      31      54 ..      29      89 .. 0.83
   2 ?   -0.7   0.0       1.6   1.6e+03      73      91 ..     169     187 ..     111     206 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.8e-05
      AAA_22  5 agilvvtGesGtGKTtllrrlleq 28
                 ++l+v G+sG+GKTtllr ++  
  KIR61832.1 31 GTLLAVLGPSGCGKTTLLRCVAGF 54
                57899**************98765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.6
      AAA_22  73 lsseellealeqalrarav 91 
                 + + el++ ++qalra ++
  KIR61832.1 169 QLRTELRADVRQALRADGA 187
                 2333555566666665555 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00023      0.22      61      83 ..     151     173 ..     127     180 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00023
     SbcCD_C  61 epalrlvfLDEAFsklDeesiat 83 
                  p++ lv+LDE Fs lD++ +++
  KIR61832.1 151 APRPPLVLLDEPFSALDAQLRTE 173
                 57899*************98876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00015      0.15       3      20 ..      36      53 ..      34      71 .. 0.89
   2 ?   -2.4   0.0       6.2   6.2e+03      50      66 ..     144     161 ..     135     183 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00015
                EESSTTSSHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavak 20
                + Gp G+GKT+l + va 
  KIR61832.1 36 VLGPSGCGKTTLLRCVAG 53
                78************9995 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.2
                 HHHHHHTS.TSEEEEEET CS
         AAA  50 fkeakeka.kpsilfiDE 66 
                 ++ a++ a +p  +++DE
  KIR61832.1 144 VAVARALApRPPLVLLDE 161
                 444555666688888888 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00011      0.11      46      66 ..      32      52 ..      21      56 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
       Rad17 46 riLLisGPsGCgkstvvkvLs 66
                 +L + GPsGCgk+t ++ ++
  KIR61832.1 32 TLLAVLGPSGCGKTTLLRCVA 52
                478899*********998765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.0   0.00014      0.14      30      82 ..      28      91 ..      23     196 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
      AAA_25 30 lpagelallaGapgtGKttlaldla.......lava.tGkpwlg...pvapeqgkVlyvsaEds 82
                +p g+l ++ G++g+GKttl+  +a        ava  G+p++    +v+p +++V +v  E++
  KIR61832.1 28 VPSGTLLAVLGPSGCGKTTLLRCVAgferadsGAVAvAGRPVAAdrvHVPPHRRRVAVVPQEGA 91
                6999****************97776222222223335677777788777778888888877776 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.1   4.2e-05     0.042      14      96 ..      28     161 ..      21     237 .. 0.57
   2 ?   -1.4   0.1       1.7   1.6e+03      56     159 ..     304     314 ..     266     355 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.2e-05
      AAA_30  14 ltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa........................eelgi.......eastiakllkrlk 81 
                 + sg  + ++ Gp G GKtt+l+ ++   +a+ g v ++A    aA+++                         +++g        ++ +++++l   +
  KIR61832.1  28 VPSGT-LLAVLGPSGCGKTTLLRCVAGFERADSGAV-AVAGRPVAADRVHvpphrrrvavvpqegalfphlsvaDNVGYgldraarRSGRVEEVL---A 121
                 45554.88999*************999988885444.4555566666665444444444444433333333333222221111111222233333...1 PP

      AAA_30  82 ........................grarlepg.tllivDE 96 
                                          + +l+p+  l++ DE
  KIR61832.1 122 lvglagygprmphqlsggqqqrvaVARALAPRpPLVLLDE 161
                 3346666666666666666666663344555556666666 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.7
      AAA_30  56 gkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlveaagigtaeLtev 154
                 g  A                                                                                             +v
  KIR61832.1 304 GPLA---------------------------------------------------------------------------------------------TV 309
                 3333.............................................................................................33 PP

      AAA_30 155 vRqke 159
                 vRq+ 
  KIR61832.1 310 VRQDF 314
                 33322 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00012      0.12      20      39 ..      32      51 ..      23      53 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
      AAA_23 20 gltlItGpNGaGKTTildAi 39
                 l ++ Gp G+GKTT+l+++
  KIR61832.1 32 TLLAVLGPSGCGKTTLLRCV 51
                567889***********997 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00015      0.15       2      20 ..      33      51 ..      32      54 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
                CEEEEC-TTTCHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkl 20
                l+++ G++G+GKTtLl+ +
  KIR61832.1 33 LLAVLGPSGCGKTTLLRCV 51
                5789************966 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.7   0.00056      0.56       2      20 ..      34      52 ..      33     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00056
      AAA_33  2 vllvGlpGsGKstlaerll 20
                + + G++G+GK+tl++ ++
  KIR61832.1 34 LAVLGPSGCGKTTLLRCVA 52
                6688**********99875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00027      0.27     100     126 ..      32      58 ..      20      67 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00027
                  SEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelk 126
                   + +++G+SG GK+tL+  +++ +++ 
   KIR61832.1  32 TLLAVLGPSGCGKTTLLRCVAGFERAD 58 
                  67789************9998865555 PP

>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       7.7   7.6e+03       7      28 ..     174     195 ..     171     202 .. 0.48
   2 ?   -2.1   0.0       4.9   4.9e+03      50      63 ..     285     298 ..     267     299 .. 0.78
   3 ?   12.9   1.0    0.0001       0.1       9      57 ..     307     352 ..     306     355 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 7.7
        TOBE   7 lpgtVvvveplgseveVrvdlg 28 
                 l++ V +   +++ + V v+ +
  KIR61832.1 174 LRADVRQALRADGATAVLVTHD 195
                 5566655555553333333333 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.9
        TOBE  50 GeeVfalikaakvh 63 
                 G  V++li +++++
  KIR61832.1 285 GRAVTVLIRPEQIR 298
                 78888999888875 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 0.0001
        TOBE   9 gtVvvveplgseveVrvdlgggatLtArvtrrsaeeLgLapGeeVfali 57 
                 +tVv+  ++g +++ +++l++g+ LtAr   +  ++  LapG +V +++
  KIR61832.1 307 ATVVRQDFHGHDALTTLRLDDGTVLTART-LDEGVA--LAPGAQVAVTV 352
                 89*************************96.999999..*******9887 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.05        49     240     264 ..      26      51 ..      20      53 .. 0.89
   2 ?    4.4   0.0     0.013        13     376     419 ..     174     217 ..     133     228 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.05
                 EEE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeAl 264
                 +++p G + ++ G+   GK+TLL+ +
  KIR61832.1  26 LAVPSGtLLAVLGPSGCGKTTLLRCV 51 
                 6899999999*************976 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.013
                 HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEEE- CS
  ABC_ATPase 376 lvdrvrelykklgvstilvvggsgdyldvAdtvilmeeykpkdv 419
                 l   vr+  +  g + +lv+   g+ l++Ad v +m++ ++ ++
  KIR61832.1 174 LRADVRQALRADGATAVLVTHDQGEALSMADAVAVMDAGRIVQC 217
                 55678888999999999999999999******999998777766 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0005       0.5      23      40 ..      34      51 ..      29      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0005
    ATPase_2 23 yfiYGpegsGKtaLlkei 40
                + + Gp g+GKt+Ll+ +
  KIR61832.1 34 LAVLGPSGCGKTTLLRCV 51
                5689***********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2604.34
//
Query:       KIR61833.1  [L=192]
Description: hypothetical protein TK50_30595 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 1357.15
//
Query:       KIR61834.1  [L=424]
Description: carboxylate--amine ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-17   63.1   0.0    3.2e-17   62.6   0.0    1.2  1  ATP-grasp_4   ATP-grasp domain
    7.2e-16   58.1   0.5    7.2e-16   58.1   0.5    3.7  4  LAL_C2        L-amino acid ligase C-terminal domain 2
    3.5e-09   37.1   1.4    2.5e-08   34.4   0.1    2.9  3  ATPgrasp_N    ATP-grasp N-terminal domain
    1.3e-07   31.5   0.1    1.1e-06   28.4   0.1    2.2  1  ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter 
    1.4e-07   31.7   0.0    2.1e-07   31.1   0.0    1.3  1  ATP-grasp_3   ATP-grasp domain
    3.2e-06   27.1   0.0    0.00024   20.9   0.0    2.2  2  GARS_A        Phosphoribosylglycinamide synthetase, ATP-grasp
    1.1e-05   25.0   0.0    1.8e-05   24.4   0.0    1.2  1  CPSase_L_D2   Carbamoyl-phosphate synthase L chain, ATP bindi


Domain annotation for each model (and alignments):
>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   1.3e-20   3.2e-17       2     157 ..     152     300 ..     151     302 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 1.3e-20
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilnilkkefaseedvsdrly 99 
                   +P+v KP++  + + V+++ +++++++a++a+      ++++ +++      +l+Ee++ G E++v+     +G ++++ +++k+ a ++++++  +
   KIR61834.1 152 GFPLVAKPVDLCAGMYVRAVADPTQLRSAYDALAGFG--VNARRQPR---VPLVLLEELLTGPEVSVETVT-CDGVTTVVGVTDKSLAGAPAFVESGH 243
                  69*******************************9663..33333333...3568**************976.9************************* PP

  ATP-grasp_4 100 vtsakvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnplrfaglc 157
                  + +a++ +  ++a +++  ++ a++gl+++++H Elr++ +g+ + +Evnp+  ++++
   KIR61834.1 244 MFPADLPAGDARAAADAAVAALAAVGLTHGVAHTELRLTPAGPRV-VEVNPRPAGNQI 300
                  *************9999999999*******************776.8****7766654 PP

>> LAL_C2  L-amino acid ligase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2       1.1   2.9e+03      52      75 ..      58      81 ..      56      82 .. 0.85
   2 ?   -2.2   0.1       1.9   4.9e+03      46      68 ..      96     118 ..      92     122 .. 0.75
   3 ?    0.2   0.4      0.33   8.4e+02      60      73 ..     252     265 ..     242     268 .. 0.80
   4 !   58.1   0.5   2.8e-19   7.2e-16       2      77 ..     341     415 ..     340     416 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
      LAL_C2 52 viatgdtaeeaeaaaeeaaaeiri 75
                v a+ ++++++ a +++++ ++r+
  KIR61834.1 58 VTAETNDPAALAAHVARLHTALRF 81
                788899999999999999999988 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.9
      LAL_C2  46 gdrlGyviatgdtaeeaeaaaee 68 
                  + +++    g++++++++a ++
  KIR61834.1  96 AEVAAHLGLPGPDPAAVRRAYRK 118
                 56667778889999999998876 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.33
      LAL_C2  60 eeaeaaaeeaaaei 73 
                  +a+aaa++a+a++
  KIR61834.1 252 GDARAAADAAVAAL 265
                 68999999998876 PP

  == domain 4  score: 58.1 bits;  conditional E-value: 2.8e-19
      LAL_C2   2 fltaprpGrlkaveGleearalpgvveveltvkpGdevrpprssgdrlGyviatgdtaeeaeaaaeeaaaeiriev 77 
                 fl++pr+G+++ ++G ++++++ gvv++ +   +G++ ++++s++++lG+v+++  +   a+a+ae+ +a++++++
  KIR61834.1 341 FLLPPRAGTVDTITGTDRLADDGGVVDWAV-RPAGHRTGDASSNNSYLGHVMTVDTDGPGARARAEAHVAALDVRY 415
                 9*****************************.899***************************************997 PP

>> ATPgrasp_N  ATP-grasp N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.1   9.7e-12   2.5e-08      28      82 .]      52     106 ..      21     106 .. 0.74
   2 ?   -1.5   0.0       1.5   3.9e+03      73      81 ..     146     154 ..     135     155 .. 0.78
   3 ?   -0.5   0.0      0.72   1.8e+03       8      59 ..     220     273 ..     214     284 .. 0.52

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 9.7e-12
                 .EEEEEEE-TTT-HHHHHHHHHHHHHHS--SEEE---GGGHHHHHHHHHHTT-SS CS
  ATPgrasp_N  28 lvekfipldlaqdpdaaleavralsrerpvdGivtftdlavplvArlaeaLgLPg 82 
                 l ++ +++  ++dp a+ + v++l+++ ++dG++t  d++++++A++a  LgLPg
  KIR61834.1  52 LAADNVVTAETNDPAALAAHVARLHTALRFDGVLTSCDYYLHTAAEVAAHLGLPG 106
                 344444455566999***************************************8 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.5
                 HHHHHTT-S CS
  ATPgrasp_N  73 rlaeaLgLP 81 
                 ++ae+Lg+P
  KIR61834.1 146 AAAERLGFP 154
                 478999988 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.72
                 T-EEEEEEETTS----S-.TT.EEEEEEE-TTT-HHHHH..HHHHHHHHHS--SE CS
  ATPgrasp_N   8 Gikvvlvdeedewapeel.aelvekfipldlaqdpdaal..eavralsrerpvdG 59 
                 G+++v+   +++ a + +  e   ++ p dl + + +a   +av+al++    +G
  KIR61834.1 220 GVTTVVGVTDKSLAGAPAfVE-SGHMFPADLPAGDARAAadAAVAALAAVGLTHG 273
                 555555555555544333233.456667777554432222245555544444444 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.1   4.4e-10   1.1e-06       3     126 ..     198     337 ..     196     340 .. 0.73

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 4.4e-10
  ATPgrasp_Ter   3 pallvmeyLegpEySvDvlaekgevlaavpRrKe.kgglq............elekdeelielaerlaeefgl.dglvnvQvrededgpkLLEiNpR 85 
                   p +l+ e L gpE+Sv  ++ +g + ++    K+ +g                  +  ++ ++a +   ++gl +g+    +r + +gp++ E+NpR
    KIR61834.1 198 PLVLLEELLTGPEVSVETVTCDGVTTVVGVTDKSlAGAPAfvesghmfpadlPAGDARAAADAAVAALAAVGLtHGVAHTELRLTPAGPRVVEVNPR 294
                   5578999**************97444333344443222224445545678665567778888888888888883578899***************** PP

  ATPgrasp_Ter  86 asGGlg...ysalaGvnlpylalklllgleteeveepeeglrvr 126
                   ++G      +  ++G++lp ++++l+lg e ++ +++++g+r +
    KIR61834.1 295 PAGNQItelVRRVTGIDLPMAYARLALG-ERPDTTPVDTGVRSA 337
                   ***75411145689**************.778888888887765 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   8.1e-11   2.1e-07      25     160 ..     146     297 ..     117     298 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 8.1e-11
                  EESS--SSSEEEEESS-------B--SS--TTE......................EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEET....TEEEE CS
  ATP-grasp_3  25 eeleeeekklvvKprdGaggesvrvveekeeaeaaieeve...............lvqefieGkplSvsllsdgekvlvlavnrqliekaekefvyaG 107
                  + +e+   +lv+Kp+d ++g  vr v +  ++ +a + ++               l+ e + G ++Sv+++       v+ v ++ +  +   fv +G
   KIR61834.1 146 AAAERLGFPLVAKPVDLCAGMYVRAVADPTQLRSAYDALAgfgvnarrqprvplvLLEELLTGPEVSVETVTCDGVTTVVGVTDKSLA-GAPAFVESG 242
                  445556789************************9999999*******************************98888899999999996.5777***** PP

                  EEES----HHHHHHHHHHHHHTTST...T--EEEEEEEEESS.SEEEEEEESS--G CS
  ATP-grasp_3 108 nvtpietelkeevvelaeevvekle...glaGyvGvDlvlkdeepyviEvNPRltt 160
                   + p++   + +++++a  +v++l     + G++  +l l+  +p v+EvNPR+ +
   KIR61834.1 243 HMFPADL-PAGDARAAADAAVAALAavgLTHGVAHTELRLTPAGPRVVEVNPRPAG 297
                  *****95.4666777777777777533134566666788999***********987 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   9.5e-08   0.00024       3     104 ..     118     222 ..     116     230 .. 0.84
   2 ?    3.9   0.0     0.016        40     166     188 ..     272     294 ..     257     298 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 9.5e-08
                 HHHHHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEE...SSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---SEEEEEEE CS
      GARS_A   3 KsfakdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgviva...kseeealkavkeilekkkfGeagekvviEelleGeEvslla 98 
                 K  a++ +++ag+p++ +++++  ++  +  e+++++  V K++ l ag  v  +   ++ + a +a++ + ++ +       v++Eell+G Evs+ +
  KIR61834.1 118 KDLAREAMRRAGLPGPAFAVTDGWADTLAAAERLGFPL-VAKPVDLCAGMYVRAVadpTQLRSAYDALAGFGVNARRQPRVPLVLLEELLTGPEVSVET 215
                 77899*********************************.**********99987734456667777777777766666677789*************88 PP

                 EE.CTTE CS
      GARS_A  99 lv.dgkt 104
                 ++ dg t
  KIR61834.1 216 VTcDGVT 222
                 7537765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.016
                 EEEEEEEEEEETTEEEEEEEESS CS
      GARS_A 166 kGvLyaglmlvedgpkvlefnvR 188
                 +Gv +++l l++ gp+v+e n R
  KIR61834.1 272 HGVAHTELRLTPAGPRVVEVNPR 294
                 699******************88 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   6.9e-09   1.8e-05       2     207 ..     118     324 ..     117     327 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 6.9e-09
                  HHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHH...STS-EEEEE--SSSEEEE CS
  CPSase_L_D2   2 kesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaaf...gnkqvlvekslkgpkeiE 96 
                  k+ a+ea+++++ p  p++a+ ++   ++la+a+++g+P + k+     G   r + +  +l+ ++ +       a      + vl+e+ l+gp    
   KIR61834.1 118 KDLAREAMRRAGLPG-PAFAV-TDGWADTLAAAERLGFPLVAKPVDLCAGMYVRAVADPTQLRSAYDALAGFGVNARrqpRVPLVLLEELLTGPEVSV 213
                  667889999999886.44555.68999***********************************99987765554444400055678*********6444 PP

                  EEEEEETTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-E.EEEEEEEEEETTTTEEEEEEEESS--CC..HHHHHHHH CS
  CPSase_L_D2  97 vevlrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvv.gagtveflldpkskeyyviEvNtRlsve..salaekaT 191
                    v  D   +v+ v+++    +    ++  + P+  L + + +a   aav+++ +vg++ g +  e  l p      v+EvN+R   +    l   +T
   KIR61834.1 214 ETVTCDGVTTVVGVTDKSLAGAPAFVESGHMFPAD-LPAGDARAAADAAVAALAAVGLThGVAHTELRLTP--AGPRVVEVNPRPAGNqiTELVRRVT 308
                  457789999999999999988889*********97.6677777789999*******986255688999997..77789******865511467889** PP

                  S--HHHHHHHHHTT-- CS
  CPSase_L_D2 192 Gldlvkeaakialgek 207
                  G+dl ++ a++alge+
   KIR61834.1 309 GIDLPMAYARLALGER 324
                  **************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.34s 00:00:00.96 Elapsed: 00:00:00.54
# Mc/sec: 2376.96
//
Query:       KIR61835.1  [L=283]
Description: hypothetical protein TK50_30605 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-10   38.9   0.0    9.3e-10   38.3   0.0    1.3  1  DUF364    Putative heavy-metal chelation


Domain annotation for each model (and alignments):
>> DUF364  Putative heavy-metal chelation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   5.2e-14   9.3e-10       2      91 ..     146     232 ..     145     257 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 5.2e-14
      DUF364   2 aldlleikkgkkVvvVGyfapvlkklkekgaeltvlelnpnlleeeegdlpdeaaeellpeadvviitGstLvngtlerllelakkaaev 91 
                 ++dll+ ++g++V vVG    +l++l+++g ++   +l   + e +e  lpd+aa  ll+++d+++ +G tL ngt+  ll++a+ a  v
  KIR61835.1 146 VVDLLPAEPGRTVLVVGVVNSLLDQLRRRGLRYLPCDLAGGRTEWDEPCLPDAAA--LLERCDAILASGMTLGNGTFAPLLRHAR-ATGV 232
                 68999***********************************999988887677766..***************************9.6554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.52
# Mc/sec: 1638.04
//
Query:       KIR61836.1  [L=357]
Description: pyridoxal-5'-phosphate-dependent protein subunit beta [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-48  165.5   1.1      2e-48  165.3   1.1    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.3   1.1   1.1e-52     2e-48       3     294 .]       8     291 ..       6     291 .. 0.91

  Alignments for each domain:
  == domain 1  score: 165.3 bits;  conditional E-value: 1.1e-52
                 GCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHH CS
        PALP   3 lgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallr 98 
                 + +g+TP+v +++   +    +++K E+l p g++K+R+a+++la ++      ++  vve++sG +g++lA+a+++lG +v++vv++   p+++allr
  KIR61836.1   8 DLVGGTPVVLVDAPLPHPHPGFLAKVECLSP-GGMKARAAVSMLAGARSRgelVPGAPVVESTSGTMGVGLAFAGQALGHPVVLVVDRELEPSMRALLR 105
                 56899**99998877666555**********.89************88888999********************************************* PP

                 HTT-EEEEE.....CCHHHHHHHH.HHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEE CS
        PALP  99 llGaevvev.....ggdydeavaa.aaelaaegegaylvsqfdnptviegygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigve 191
                 ++Ga++++v      g++++a+     ++ a  +gay+ +q+ np++ +gy+ ++ Ei++q++ ++d++v++vG+Gg  aG+a++l+ ++p  r+igv+
  KIR61836.1 106 AHGARLEVVdaphpAGGWQQARLDrLLRVRAALPGAYWPDQYRNPDNAAGYAGLADEIVAQVD-AVDTLVCSVGTGGHSAGLARALRRHWPRLRLIGVD 203
                 *********999985555555544377777778*****************************5.*********************************** PP

                 ECTTCGGTTCCS..S.SS..B.SSS.CCSTCS.CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTCEEEE CS
        PALP 192 pegsdalarslragrrvtvpvsdtiadglavg.spselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkegdrvv 289
                 ++gs  +++ +             ++ gl+ + +p + + +++d+       v  +ea++++r+lar++++  + s++a   ++  + a++ ++gdrv+
  KIR61836.1 204 TVGSTIFGQPA----------RARLMRGLGSSiHPRNVDYAAFDEVHW----VGPAEAVQTCRRLARHAFVTGGWSTGATARVA--AWAARTRPGDRVL 286
                 ***********..........688********9999999999999999....**************888888888888888888..8999999999*** PP

                 EEE-B CS
        PALP 290 viltg 294
                 +++++
  KIR61836.1 287 AVFPD 291
                 **986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.57
# Mc/sec: 1884.60
//
Query:       KIR61837.1  [L=350]
Description: muconate cycloisomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-40  136.7   7.4    1.3e-39  136.0   7.4    1.3  1  MR_MLE_C  Enolase C-terminal domain-like
    1.2e-06   28.7   0.2      4e-06   27.0   0.2    1.8  1  MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N
  ------ inclusion threshold ------
       0.14   11.3   0.3       0.22   10.6   0.3    1.2  1  MAAL_C    Methylaspartate ammonia-lyase C-terminus


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.0   7.4   2.2e-43   1.3e-39       2     216 ..     140     340 ..     139     344 .. 0.87

  Alignments for each domain:
  == domain 1  score: 136.0 bits;  conditional E-value: 2.2e-43
                 HHHHHHHHHHHHT-SEEEEETSSSHHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGGGTESEEESSSSTTTHHHHHHHHHHHH.SS CS
    MR_MLE_C   2 laeearelvaeqgfravKlkvggddvaedvervravreavgpgddvdlmvDanqawdlatAirvareleeldllwlEEPvppeddleglaelrara.si 99 
                 +a+ ar+lva+ gf+ +K+k g+   ++dv+rv+avr a+ p   ++l++D n+aw++++ +rv+ +++++ ++ +E+Pvpp  d+++la++  ++  +
  KIR61837.1 140 AAATARRLVAA-GFTVLKVKAGA---DDDVARVAAVRTAA-PA--ARLLLDPNGAWTPERTVRVLDAVAACAVDAVEQPVPPG-DPDALAWIG-ARvAV 229
                 56778776665.********776...7*************.64..5**********************99************6.6********.5569* PP

                 EEEESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCS.SHHHHHHHHHHHHTTTTBEEEEEEGGGGHTSGCSBSSSS CS
    MR_MLE_C 100 piaagEslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgs.gglglaaslhlaaaipnllileyfldaelleeelleepl 197
                 p++a+E+++++ad+ +l  agav  ++++++r+gGi++ar++++ a  +g++v++++   + lg a +lhla  ++   +++ +     l ++     +
  KIR61837.1 230 PVVADEDVATVADVHRL--AGAVAGINVKLARCGGIDAARRLIDTATGYGMDVMLGCLVaSTLGIAPALHLAGHAR---WVDLDGHL--LLADDPWTGI 321
                 *****************..**************************************6438**********98884...33333322..4555555667 PP

                 EEETTEEECTSSSBTSSEB CS
    MR_MLE_C 198 evedGrvtvpdgpGlGvel 216
                    dG++++p gpGlGv++
  KIR61837.1 322 GGADGTLRTPGGPGLGVRP 340
                 7899*************87 PP

>> MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.2   6.7e-10     4e-06      12     115 ..      11     117 ..       5     118 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 6.7e-10
                 EEC.EEEETTEEEEEEEEEEEEEEECTTEEEEEEEE-STT..GHHHHHHHHHHHHHHHHTT.SBTTHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH CS
    MR_MLE_N  12 klr.PvqlavttvqkqslvlvkietseGvvGigeatsvgg..raetikaelddhlapllvg.kdaanisdlaqllkravlgnmsAkaaidmAlwDlkak 106
                 +l+ P+++++  + +   v v+++ ++G +G+ge ++      ++ +  +l + l p + g  d++ +++    l+     +     a+d A++Dl ++
  KIR61837.1  11 PLAePLRISRSVMARRDAVAVRLT-HDGGTGHGEVVTSAYqrLDLGRIDALLTALRPRVTGyADPEALRADLPALAADLADAPGVLGALDAAVHDLVGR 108
                 5666*******************9.9********99888544666777777777888888844777787777777777777888889************ PP

                 HTTSBHHHH CS
    MR_MLE_N 107 alnlpladL 115
                 ++++p++ L
  KIR61837.1 109 RAGVPVWRL 117
                 *******98 PP

>> MAAL_C  Methylaspartate ammonia-lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   3.7e-05      0.22     138     197 ..     227     284 ..     221     295 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.7e-05
      MAAL_C 138 ikvelvaDeWcntledirefvdaeaadlvqiktPDlGginntieavlyckekgvgaylGG 197
                 ++v +vaDe   t+ d+++ +   a+  + +k    Ggi+ +   +  +   g+ ++lG 
  KIR61837.1 227 VAVPVVADEDVATVADVHRLAG--AVAGINVKLARCGGIDAARRLIDTATGYGMDVMLGC 284
                 7899***************976..555699999********9999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.56
# Mc/sec: 1889.07
//
Query:       KIR61838.1  [L=515]
Description: peptide ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-63  214.7   0.0    2.4e-63  214.4   0.0    1.1  1  SBP_bac_5   Bacterial extracellular solute-binding proteins, 


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.4   0.0   1.4e-67   2.4e-63       2     360 ..      88     421 ..      87     438 .. 0.93

  Alignments for each domain:
  == domain 1  score: 214.4 bits;  conditional E-value: 1.4e-67
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESSETTTTTTHCHHHHHHH CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkkpnalfltllaavpasi 100
                 ++p+LA+  we ++  + ++++LR+ ++F+DG p+ A+Dv +s+ r+ dp+ a +++ +le   d  +  avdd+tv++ l +p+a+f+++laa+ a +
  KIR61838.1  88 IRPRLASG-WEPDAGLTRWRITLRE-ATFHDGGPVRAADVLYSYARITDPKRAFRARASLE-LIDLRASRAVDDRTVELALRRPFAEFPNVLAAFGAYV 183
                 78******.7***************.*******************************9998.99*********************************99 PP

                 GCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCCTHCHHHHHTTEEEEE CS
   SBP_bac_5 101 akkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddvaepppsdieqlkeakglkvly 199
                 +         +++d  + pvg+GP+ +++f+pg+++ l+r  d w  g+p+ld++e+ v ++++ar++al+ G++d++ +++p+ + ++  +  + +  
  KIR61838.1 184 V--------PEGADAFDRPVGSGPFAFDAFQPGRSLLLKRYADHW-DGAPHLDELEYLVANEESARINALLGGQADYAHDVTPTTARTYAGDARVRI-T 272
                 9........568899******************************.***************************************************.* PP

                 EEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHHHTT-BCSSTSCEETCEEE CS
   SBP_bac_5 200 espgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLkeaGykdgdggglrekklk 298
                 + ++++++ la++ ++ppfd+ ++R+A+ +  Dr+++v++vl g ++++n l++ ++ ++ ++  +  +  d++ A+ l + aG  +            
  KIR61838.1 273 RMANSTMQALAMKVDRPPFDNRDLREAMFLLTDRQQLVDTVLSGAGQVGNDLFGKGYEHYADDIAQRVP--DLDRARFLVDRAGARGLR---------- 359
                 *****************************************************************9965..***************986.......... PP

                 EEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTS CS
   SBP_bac_5 299 ltlllasgspaekaiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgadyp 360
                 + l +a+  +   ++a ++++q +++G++ve ++    + +++  + g +  + +g +++  
  KIR61838.1 360 IPLDTAPVASGFVETASVFAEQARQVGLTVEARSGNKDTYWKDILTGGVLACYRSGAMPIET 421
                 ***********************************662555555666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.53
# Mc/sec: 2928.00
//
Query:       KIR61839.1  [L=228]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-26   91.1   0.1      7e-26   90.1   0.1    1.5  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
    1.3e-25   89.8   0.2    1.8e-25   89.3   0.2    1.2  1  Response_reg  Response regulator receiver domain
  ------ inclusion threshold ------
       0.12   12.1   0.3       0.33   10.6   0.1    1.8  2  TadZ_N        Pilus assembly protein TadZ N-terminal


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.1   1.2e-29     7e-26       1      77 []     151     226 ..     151     226 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 1.2e-29
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  g++v +t++ef+lL  L+e++grv+sr++Ll++vwg+d  +d+r vdvh+ rLR+k+e d+++p+++ t+rg GY+l
   KIR61839.1 151 GQRVPVTRTEFRLLCELAEHAGRVLSRQQLLQRVWGYDT-GDERLVDVHVGRLRQKIESDPANPEHLVTLRGLGYKL 226
                  68999*********************************9.***********************************97 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.2     3e-29   1.8e-25       1     111 [.       4     112 ..       4     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 3e-29
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vl+++Dd  +r +l  +le+egy + + a++++e l+  +++  d +l+D+++pg+dG+e ++++r++d ++p+++++a+++  d+v+al+agadd+
    KIR61839.1   4 VLVIEDDDRIRLALLLALEDEGY-DARGAATAEEGLRAQRRDPADYVLVDLMLPGLDGFECIRQLRRDD-DVPIVVVSARDDTHDIVAALEAGADDY 98 
                   89*********************.*******************************************88.*************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   l+Kp++++eL+++l
    KIR61839.1  99 LVKPVAIKELTARL 112
                   ***********987 PP

>> TadZ_N  Pilus assembly protein TadZ N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   5.6e-05      0.33      80     124 ..      76     120 ..      68     130 .. 0.79
   2 ?   -2.1   0.0      0.48   2.9e+03     113     125 ..     144     156 ..     135     160 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.6e-05
                 EEEE-TT-HHHHHHHHHHT-SEEEETT-BHHHHHHHHHHHHTTS- CS
      TadZ_N  80 vaigdgldnqlvlaamragardfitygaraseltglirrlggrlp 124
                 v +    d + ++aa+ aga d++       elt  +r l  r  
  KIR61839.1  76 VVVSARDDTHDIVAALEAGADDYLVKPVAIKELTARLRALRRRAR 120
                 5555556777899*************************9988764 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.48
                 HHHHHHHHTTS-S CS
      TadZ_N 113 tglirrlggrlps 125
                 +g +rr g r+p 
  KIR61839.1 144 AGEVRRAGQRVPV 156
                 6888999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 1371.25
//
Query:       KIR61840.1  [L=191]
Description: hypothetical protein TK50_30665 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-09   38.9   0.0    2.2e-09   38.0   0.0    1.4  1  Germane   Sporulation and spore germination


Domain annotation for each model (and alignments):
>> Germane  Sporulation and spore germination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   1.2e-13   2.2e-09      13     102 ..      70     165 ..      53     166 .. 0.82

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 1.2e-13
     Germane  13 vrlvrek....seelakalleeLlagpt.....eglrsalpegtkllsvtvkddvatvdlskefl..gssseelalasivntltelpeiekVqflvdGk 100
                 v     +        a+a l+ Llagp+     +gl+salp+ +    v v d++a+v  +++ +  g s+e la  +iv tl++ ++++ V fl dG+
  KIR61840.1  70 V-----DrrvgRPLDAEAQLRDLLAGPSaverdSGLTSALPGAIGAGVVGVADGQARVRVDGTGDdtGRSDEVLAFGQIVCTLAARDDVDAVAFLRDGR 163
                 3.....3333455678999*************************888888888899999999444889999999************************* PP

     Germane 101 pl 102
                 pl
  KIR61840.1 164 PL 165
                 97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.52
# Mc/sec: 1110.81
//
Query:       KIR61841.1  [L=272]
Description: hypothetical protein TK50_30670 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-16   58.0   1.0    1.1e-15   57.8   1.0    1.1  1  RIP       Ribosome inactivating protein


Domain annotation for each model (and alignments):
>> RIP  Ribosome inactivating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   1.0     6e-20   1.1e-15      40     195 ..      69     232 ..      38     233 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 6e-20
                 S-EEEEEEE..-SS-EEEEEEETTTTEEEEEEETT.SEEEESCSTTS-GGSS.......SS-EE-SC-SSHHHH..CTTS-GGGSEBSHHHHHHHHHHH CS
         RIP  40 erwvhvelk..tetssltLalrddnlYlvGFrnrn.gvwyelakekgskall.......pgsttlgfggsYslLenvgsasleevelgrqsleeAvraL 128
                 + ++ v++   ++ + ++L++ +dnlYl ++ +++ ++ y +++++  ++            t  +++g+Y++L  vg+ s++++  + q++ + +r+L
  KIR61841.1  69 RGMIQVRVLdtNNAHLVSLYFWVDNLYLAAWYSPTnNRHYLFSQGDRWRNVVsvlgldvSRITVYNMDGNYNEL--VGGNSRSTLVTNPQRMYDSLRTL 165
                 4566666665566677*****************9978999999998887777999***9999************..7779******************* PP

                 HT--SXXXSHHHHHHHHHHHHHHTHHHHHBHHHHHHHHHTTTSTT-BE...--HHHHHHHCTHHHHHHHH CS
         RIP 129 aryktaaaeqadlaraLvvlivmvcEaaRfntisrtvkagfdsglgks...itetlvklvnnWgrlSkal 195
                  r++t    ++d++ aLv  i+m++EaaR  +i +t++ +++ ++  +   +++++v l++ Wg +S+ +
  KIR61841.1 166 GRTTT---LNNDVSAALVQAITMTSEAARYSPILDTIRYNIRYANRLQslpLNDDNVWLTTHWGTVSAFV 232
                 *****...8899*****************************9998877899****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.44
# Mc/sec: 1856.65
//
Query:       KIR61842.1  [L=758]
Description: hypothetical protein TK50_30680 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-26   92.8   0.0    4.6e-26   92.1   0.0    1.3  1  Glyco_hyd_65N_2  Glycosyl hydrolase family 65, N-terminal dom


Domain annotation for each model (and alignments):
>> Glyco_hyd_65N_2  Glycosyl hydrolase family 65, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0   2.6e-30   4.6e-26       1     219 [.      12     240 ..      12     251 .. 0.84

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 2.6e-30
  Glyco_hyd_65N_2   1 LwykqPAtnweeaLplGNGrlGamvfGgvakEriqlNedtlWsG.gprsnnnynaaeaLeeiRallfagkykeaeelaketlggesssgayqpl 93 
                      +w ++PA+ we+a+  GNG+ G+mv G+++ Er+  N++++  + g++++++++ a  L+ +R+l +ag+ +ea++l++      +++ +++p 
       KIR61842.1  12 IWDDAPAAGWEDAFLSGNGEYGIMVLGDPHAERVVVNHHRFVLPnGTHDARPPRLAHLLPRVRELALAGRRAEASRLLGGGRELRWTQ-SFHPG 104
                      799*****************************************99999*************************************95.9**** PP

  Glyco_hyd_65N_2  94 gdLtld..............qsgdsskvt......nYrReLDlstaiatveYsvegvtytrevfaSapdqVlvvrlsaskagklnltvslesel 167
                      ++Lt+d                             +YrR+ D++t+ + ve++ +    +r+ f+S+ d+ +v+rl+a     + lt  l++  
       KIR61842.1 105 FALTIDaagpggavepggaaGA------GaaalpaGYRRSTDFRTGEVVVEWAGG----ERRGFVSRADGLVVLRLEAGDC-VVGLTGDLPGRP 187
                      ******7777777766554333......0444566*****************955....5****************99776.578888888887 PP

  Glyco_hyd_65N_2 168 e.....kktketvkgntltlrgalkaekdnglkfeailrvvatgGsvaadggtltve 219
                            +++++  ++  l++rg+++    +++ fe+++ +    G+v + g+++ v+
       KIR61842.1 188 AdvryeTAAYQHGQDVFLRIRGHYP-PVGGAYGFEGLALL---TGDVRVLGDRVAVR 240
                      7788888999999999999999996.55666666666655...55555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 5581.17
//
Query:       KIR61843.1  [L=553]
Description: sugar ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-22   78.4   7.7      9e-22   78.4   7.7    2.1  2  SBP_bac_1   Bacterial extracellular solute-binding protein
    2.8e-17   63.4   1.4    6.2e-17   62.3   0.7    1.8  2  SBP_bac_8   Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
        1.1    9.2   6.4        6.4    6.8   6.4    2.5  1  TAT_signal  TAT (twin-arginine translocation) pathway signal 


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   7.7   1.5e-25     9e-22      20     275 ..     126     378 ..     111     397 .. 0.87
   2 ?    1.7   0.2     0.033     2e+02      92     139 ..     465     505 ..     458     514 .. 0.70

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 1.5e-25
                 HHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEE...CGGHHHHHHHT..TSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCEEE.ES.EEE CS
   SBP_bac_1  20 kehpgikVeiesvgsgslaqkltlaiaaGdgpaDviav...dndwiarlaka..glllpldpyvkaylapgvkdaadklsssvlpkildskv.ly.vPl 111
                 k   g++++   +++ ++a+kl + ++a d p D+ +    + d++ar+ +a  +l+++l++ +k ++a +++  a+  ++s+ +++++++   +  P+
  KIR61843.1 126 K--LGVEINPSLQDGTTFADKLNAMLGARDVP-DLLMApnwEVDKVARFSDAvkALFEDLTDHLKGDAAAKYPYLAALPTGSWEYSVWGGRLaAVpYPT 221
                 3..4788888888*****************88.****999999*********************************************965599999** PP

                 E.E.EEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHT..GGGEECCCT....HHCSHHHHSHHHHHHH CS
   SBP_bac_1 112 y.a.argliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslg..gkvfdkdgg....gldnpegvtaatylvk 202
                 +   a++l+ +kdlf+kagl++p++ +el+e++kk++++ k+           +  +  +  + + +g  +++ +k gg    +++np+++ a+++  k
  KIR61843.1 222 DgPfAWALFHRKDLFDKAGLAAPTSPEELYELGKKATDPAKGV----------WAFGTIFDMVQQFYGcqQTWRKKPGGglehKFENPAFKAALEFTAK 310
                 *77****************************************..........44444444444444553455566666******************** PP

                 HHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEB CS
   SBP_bac_1 203 lyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPa 275
                 l+     +++l  +++ +++ga+ ++lf+aG++ m+ +gl+a++    +  kv + +++ +++   ++ + P 
  KIR61843.1 311 LF-----KEGLVHPDTVSSKGADEKQLFKAGKILMFQDGLGAWQGLQGEQSKVLASFNMQPLPVFGAAGAQPV 378
                 **.....999**********************************99999999999999988887666666665 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.033
                 EEHHHHTHHHHCE.EEESEEEEEEEEEEEETTTHH...CTTGGG..SHBHHHHH CS
   SBP_bac_1  92 klsssvlpkilds.kvlyvPlyaargliYNkdlfe...kagldp..pwtWdelv 139
                  +++++++ +ld+ k              N  l+e   +ag+++  p +W+ ++
  KIR61843.1 465 GDTPDYVQQYLDYlK-------------KNVALLEkdlFAGIKLelPANWSKII 505
                 456667777777666.............4666666666667777779***9765 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.7     1e-20   6.2e-17       4     224 ..     121     383 ..     118     425 .. 0.67
   2 ?   -1.1   0.0      0.22   1.3e+03      12      34 ..     458     480 ..     452     509 .. 0.85

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 1e-20
                 HHHHHH-TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHH.....TTSB--GG.........GSTTHHH-HHHHHTT--.TS.---- CS
   SBP_bac_8   4 kefekktgvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlae.....eglladls.........dldnlddltdalaavgy.dgklygv 87 
                 ++ + k gv++n + +++ + ++kl+a+l a ++pd  +++a++  +++ a      + l++dl+         +++ l+ l++ +  +++  g l++v
  KIR61843.1 121 AAINTKLGVEINPSLQDGTTFADKLNAMLGARDVPD--LLMAPNWEVDKVARfsdavKALFEDLTdhlkgdaaaKYPYLAALPTGSWEYSVwGGRLAAV 217
                 5667777****************************8..445555555554444337778888999544333333333333355544444444888**** PP

                 EEEEEEE-..EEEEEHHHHHHS...---BHHHHHHHHHHH..HHH-SEGG---G..GGGGGTHH......ETTEE---H.........HHH.HHHHHHH CS
   SBP_bac_8  88 Pyasetpy..vliynkdlleka..edpktwdellaaakkl..kgkfglpdpasg..wlqaalla......kdgksldddg.......gkdglkealell 165
                 Py +  p   +l+ +kdl++ka    p++ +el ++ kk+  + k  ++  +++  + q++  +               g       +++++k+ale+ 
  KIR61843.1 218 PYPTDGPFawALFHRKDLFDKAglAAPTSPEELYELGKKAtdPAKGVWAFGTIFdmVQQFYGCQqtwrkkP--------GgglehkfENPAFKAALEFT 308
                 *****986447**********7887**********999995546667666665322444444446555543........2223344589********** PP

                 HHHHHTT-....EE.-S..--SSTTTTTSBSEEEE-TTHHHHHH-TTTSEEEE-...-........S--EEEEEE CS
   SBP_bac_8 166 kklkdngk....ty.dtgadavsefanGevaftingswdiaaaqkagkklgaiv...p........kqgsfaggk 224
                 +kl + g     t+ ++gad  ++f+ G++++++ g ++++ +q +  k+ a +   p        +q +++g++
  KIR61843.1 309 AKLFKEGLvhpdTVsSKGADEKQLFKAGKILMFQDGLGAWQGLQGEQSKVLASFnmqPlpvfgaagAQPVIWGSE 383
                 ******976555335799**************************6655444433212123555443232455544 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.22
                 EEEEEEE--SSSHHHHHHHHHHT CS
   SBP_bac_8  12 vkvnvvtaasndleqklkaalaa 34 
                 v v+v + +++d++q++   l++
  KIR61843.1 458 VAVKVKSGDTPDYVQQYLDYLKK 480
                 67899999999999999887754 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.4    0.0011       6.4       3      24 ..      11      32 ..       9      36 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0011
  TAT_signal  3 SRRdFLKgsAAaaAAaalggca 24
                +RR++L+ ++ +aAA++ g+ +
  KIR61843.1 11 DRRTLLRLAGLGAAATMGGATL 32
                6999999777777776666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 3631.73
//
Query:       KIR61844.1  [L=343]
Description: sugar ABC transporter ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-15   57.8  11.1    1.2e-15   57.8  11.1    1.6  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.31   11.0  14.3       0.21   11.5   3.6    3.2  3  Colicin_V     Colicin V production protein


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       0.7   6.2e+03      56      63 ..      55      62 ..      44      79 .. 0.51
   2 !   57.8  11.1   1.3e-19   1.2e-15       3     183 ..     129     334 ..     127     336 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.7
  BPD_transp_1 56 viilllls 63
                  +++lll++
    KIR61844.1 55 AAALLLVF 62
                  22222222 PP

  == domain 2  score: 57.8 bits;  conditional E-value: 1.3e-19
  BPD_transp_1   3 llGilaalnrnkkldkllrpliivllslPsfvlaillvlvf......................vilsilghlilpviillllsaapyvrlirraalr 77 
                   +l il+a   n+ ++  +r++++ + +lP+f  ++l+v +f                       i++   + i  v + +++  +++  +++ aal 
    KIR61844.1 129 PLPILLAILLNSLVSGRVRGFVQSVVYLPHFFSWVLVVTFFvqmlggagllaqemreagmqpwNIMTNPDTFIVLVTAEAVWKDIGWGAIVFLAALA 225
                   7889999999**********************9999998889999*****************9999999999999********************** PP

  BPD_transp_1  78 slpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis....nggvlalviavlllnl 170
                   +++ +l+eaa a+Ga+rw+++++++lP + p+i+ +li+++g +l    +  f+++  ++g+   e++  + y +++    +g+ +a++++ +++ l
    KIR61844.1 226 AIDPNLYEAAAADGAGRWRRMWHITLPGLRPVIVLLLIMRLGDALS-VGFEQFILQREAVGRDAAEVLDTFVYYQAIatqqWGLGAAAGLFKAVVGL 321
                   *******************************************986.55667888888899999999999988888889999999999999999999 PP

  BPD_transp_1 171 vadilqrlldprv 183
                   ++ + +  l+ r+
    KIR61844.1 322 ILILAANKLAHRL 334
                   9888877777665 PP

>> Colicin_V  Colicin V production protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.07   6.3e+02      26      52 ..      49      80 ..      47     129 .. 0.71
   2 ?   11.5   3.6   2.4e-05      0.21       4      73 ..     132     225 ..     131     228 .. 0.70
   3 ?    5.2   0.3    0.0022        20      82     118 ..     292     328 ..     283     338 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.07
   Colicin_V 26 lsllgwvvafvvasllypslaellae.....l 52
                l++ + ++a+++ +++ p+l++ +a      +
  KIR61844.1 49 LAMTAPAAALLLVFHYLPTLGNVIAFqdynpF 80
                56667788999999999999999887555551 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 2.4e-05
   Colicin_V   4 iillilllsallGlrrGfvrevlsllgwvvafvvasllypslaellae........................lilspalaaiiaflllfllvll 73 
                 i+l+ill s++ G +rGfv++v++l  ++  ++v +++ + l+                             ++ ++++  i   +++fl++l+
  KIR61844.1 132 ILLAILLNSLVSGRVRGFVQSVVYLPHFFSWVLVVTFFVQMLGGAGLLaqemreagmqpwnimtnpdtfivlVTAEAVWKDIGWGAIVFLAALA 225
                 799********************98666665555555555554322222257778888888877777777766666777777777777777765 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0022
   Colicin_V  82 lsklvsktglglldrllGaifGllkglllvvllllll 118
                 l+++v  + + +    lGa+ Gl+k+++ ++l+l++ 
  KIR61844.1 292 LDTFVYYQAIATQQWGLGAAAGLFKAVVGLILILAAN 328
                 6666666666777777888888888888888777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2483.91
//
Query:       KIR61845.1  [L=314]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-11   42.0  13.5      8e-11   42.0  13.5    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        1.3    9.0   5.3        1.9    8.5   0.5    3.1  3  NdhL          NADH dehydrogenase transmembrane subunit


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2       0.1   9.3e+02      48      76 ..      31      59 ..      28      65 .. 0.77
   2 !   42.0  13.5   8.9e-15     8e-11       2     183 ..     109     307 ..     108     309 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.1
  BPD_transp_1 48 ilghlilpviillllsaapyvrlirraal 76
                   +g ++  v++++++  + +++l+++ a 
    KIR61845.1 31 LFGKGVVLVLLVAAVLVPLWAVLVTSLAS 59
                  57778888888888888888888887665 PP

  == domain 2  score: 42.0 bits;  conditional E-value: 8.9e-15
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivll.slPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasr 94 
                   ++l +laa    ++++++ + l++++ +++  +P +v   l+v      ++lg     + ++l   +  ++++++ra++  +p +l   ar++Ga++
    KIR61845.1 109 LVLTVLAAyglSRPGSVGHRGLLFFFLLTFlIFPGLVPSYLVV------TGLGLKDSIWSLILPSAISVFNLVVIRAFFMGVPGELLDSARIDGAGE 199
                   5777888877666666665555555544441555555555555......78887777777888888999**************************** PP

  BPD_transp_1  95 wqifrkvvlPnalppiitglilafggllggavlleflgswpG...lgtllleailgydyseis................nggvlalviavlllnlva 172
                   ++i+ +++lP+++ +i+   ++ ++g +++++   +++ ++    ++++l + il+ + ++ s                ++ ++++v+ v++ ++v+
    KIR61845.1 200 FRILTRIMLPLSKAVIAVVGLFYAVGYWNAYFNSVLYIDDNDkfpIQRVLQSYILAGQSPNVSgaavslpgitaypptlAVKMAVVVVTVVPAIIVY 296
                   ********************************9999998885555555555555555555555********************************** PP

  BPD_transp_1 173 dilqrlldprv 183
                    ++qr++ + v
    KIR61845.1 297 PFVQRHFTKGV 307
                   *******9987 PP

>> NdhL  NADH dehydrogenase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.5   0.00021       1.9      45      62 ..     128     145 ..      91     149 .. 0.75
   2 ?   -1.2   0.1      0.23     2e+03       8      31 ..     158     181 ..     153     184 .. 0.77
   3 ?    0.9   0.1      0.05   4.5e+02      18      42 ..     281     305 ..     269     311 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00021
        NdhL  45 iErlliymlvflfFPGll 62 
                    l+ + l+fl+FPGl+
  KIR61845.1 128 RGLLFFFLLTFLIFPGLV 145
                 55678999********96 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.23
        NdhL   8 dtllvllaylalsvlYllviPlil 31 
                 d+++ l+   a+sv+ l+vi ++ 
  KIR61845.1 158 DSIWSLILPSAISVFNLVVIRAFF 181
                 677778888889999999987665 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.05
        NdhL  18 alsvlYllviPlilylwlrkRWyva 42 
                  ++v+ + v+P+i++  + +R +++
  KIR61845.1 281 KMAVVVVTVVPAIIVYPFVQRHFTK 305
                 4677778899999877666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2231.99
//
Query:       KIR61846.1  [L=223]
Description: hypothetical protein TK50_30725 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-28   97.8  13.3    1.2e-27   97.6  13.3    1.0  1  DUF2993   Protein of unknown function (DUF2993)


Domain annotation for each model (and alignments):
>> DUF2993  Protein of unknown function (DUF2993)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6  13.3   6.5e-32   1.2e-27       1     212 []       2     202 ..       2     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 6.5e-32
     DUF2993   1 vadrgaaavaeqriatelrsqlelaedpeVsiggfPfltqllaGeldsvsvaargvvvdgpglriesveltledvrldlsdilgkvrlvpvgrltatvt 99 
                 vadr++a+ a qr++ +l+ +++l  +p+V++ggfP+l+ +l+Gel +vsv+a++v+ +  ++r  +v+++l  vrl+ ++       ++vg l+++++
  KIR61846.1   2 VADRWVARTAAQRLSDRLACAAGLDRSPTVDLGGFPVLPGVLTGELGRVSVRAADVTRG--DVRAAEVDAELSQVRLPGEQ------PARVGALDLRIR 92 
                 79********************************************************7..88888*************97......899********* PP

     DUF2993 100 lteadlnralasp.....llitdlqdlsnggvkltgnnlpvvveaglrlaagdgqlrleltdle.aglglpes.avdlpaelldalleglselldlpgl 191
                 + ++ l  +++ +     + + +l  +++++++ +g++lpv+v a  r a++ g+l++++t++e +g    ++ +      l  +l+ g++++ +lp l
  KIR61846.1  93 VGFDALPGTVGERpvhyrG-VGGLL-AVETTAPMAGQQLPVTVLA--RPAIDAGRLTVTPTEIEvLGMR--RPaGA----KLVERLTGGRDLSRPLPAL 181
                 ***********999**954.44555.9*********855555555..668899999********55554..44444....459**************** PP

     DUF2993 192 pfglrltevrvtdgglrltge 212
                 p gl +++v+v+d+glrl+++
  KIR61846.1 182 PAGLSWQGVDVADDGLRLRLT 202
                 ******************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       178  (0.00992805); expected 358.6 (0.02)
Passed bias filter:                      146  (0.00814323); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1712.67
//
Query:       KIR61847.1  [L=231]
Description: alkaline phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-27   94.5   0.0    1.8e-25   88.8   0.0    2.3  2  Trans_reg_C     Transcriptional regulatory protein, C termina
    3.3e-25   88.4   0.0    4.2e-25   88.1   0.0    1.1  1  Response_reg    Response regulator receiver domain
  ------ inclusion threshold ------
      0.019   15.4   0.0      0.025   15.0   0.0    1.2  1  FleQ            Flagellar regulatory protein FleQ
      0.047   13.7   0.3        1.6    8.7   0.1    2.5  2  Glyco_transf_4  Glycosyltransferase Family 4
      0.053   13.6   0.1       0.61   10.1   0.1    2.1  2  B12-binding     B12 binding domain


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.024        86      36      64 ..     100     128 ..      88     132 .. 0.75
   2 !   88.8   0.0   5.1e-29   1.8e-25       4      77 .]     156     227 ..     153     227 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.024
                  TTTSTSHTHHHHHHHHHHHHHHHTTTTSS CS
  Trans_reg_C  36 gededvddrtvdvhisrLRkkLeddekkp 64 
                  g+d+ +   +v+  ++r+R  L+  +++p
   KIR61847.1 100 GDDYVTKPFSVEELVARVRAVLRRIGSAP 128
                  3444677789************9987666 PP

  == domain 2  score: 88.8 bits;  conditional E-value: 5.1e-29
                  EE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   4 veltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  ++l+p+efklL+ L+ npgrv+sr+++l++vw++d+d+++++vd++i +LR+kL++ +  p lIet rg GY l
   KIR61847.1 156 LSLSPTEFKLLRHLMLNPGRVLSRAQILDAVWRYDFDGASNVVDTYIGYLRRKLDPLG--PPLIETRRGFGYAL 227
                  79******************************************************65..89**********86 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.0   1.2e-28   4.2e-25       1     112 []       8     118 ..       8     118 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 1.2e-28
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vl+vdD+p +++ l+++l+ +g+ +v +a++++eal+ + e+++ l++lD+ +p+ dG+e+++ +r+  +e+ +++lta+++  d++++l +g dd+
    KIR61847.1   8 VLVVDDQPNIVDMLATVLRFHGF-DVVTATTAAEALRRAGESRPRLVVLDVLLPDGDGFEVCRSLRAAGHEIGIVFLTARDAPRDRIAGLTYGGDDY 103
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   ++Kpf+ eeL+++++
    KIR61847.1 104 VTKPFSVEELVARVR 118
                   ***********9985 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   6.9e-06     0.025       1      81 [.       7      89 ..       7     114 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.9e-06
        FleQ  1 kiLvidddaerrrdletiLeFlgeeveavs.seel.saaleessseala.vilgsvssleealealaekdphlPvlllgesdea 81
                ++Lv+dd+ +  + l t+L+F g +v++ +  +e+  +a e++++ +++ v+l ++    e +++l  + +++ ++ l+ +d++
  KIR61847.1  7 RVLVVDDQPNIVDMLATVLRFHGFDVVTATtAAEAlRRAGESRPRLVVLdVLLPDG-DGFEVCRSLRAAGHEIGIVFLTARDAP 89
                69***********************5544303333255544444444331333333.356677777777777776666666665 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.039   1.4e+02      64     100 ..      21      53 ..      13      55 .. 0.62
   2 ?    8.7   0.1   0.00044       1.6      10      52 ..      66     112 ..      65     138 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.039
  Glyco_transf_4  64 lrrllkrekpDvvHahspaalgaallalrrrlgiplV 100
                     l+ +l+ +++Dvv a +   +  al+++  +++++lV
      KIR61847.1  21 LATVLRFHGFDVVTATT---AAEALRRAG-ESRPRLV 53 
                     67889999999994433...333333333.4666665 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00044
  Glyco_transf_4  10 eLaraLarrGheVtvvtpgddgpleeev....elvvrvprvplpllk 52 
                     e++r L+++Ghe+ +v  + +++++++     + + + + +p+   +
      KIR61847.1  66 EVCRSLRAAGHEIGIVFLTARDAPRDRIagltYGGDDYVTKPFSVEE 112
                     789*************8888888888765566444444444433333 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00017      0.61      14      60 ..      15      58 ..       3      66 .. 0.80
   2 ?    1.0   0.0      0.11   4.1e+02      20      41 ..      67      91 ..      65     121 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00017
  B12-binding 14 plGlavlaaalrdagfeVqllganvenedivaairaekpdvvglSal 60
                 p  +++la +lr +gf+V+     +++++ ++++ + +p++v+l +l
   KIR61847.1 15 PNIVDMLATVLRFHGFDVVTA---TTAAEALRRAGESRPRLVVLDVL 58
                 55589*************555...334899999*********99875 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.11
  B12-binding 20 laaalrdagfeVqllganven...e 41
                 + + lr+ag+e+ ++ +++ +   +
   KIR61847.1 67 VCRSLRAAGHEIGIVFLTARDaprD 91
                 5678999999999987777654441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1492.13
//
Query:       KIR61848.1  [L=419]
Description: kynureninase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-22   77.9   0.0    8.4e-22   77.6   0.0    1.0  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.017   13.7   0.0      0.023   13.3   0.0    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
       0.24   10.0   0.0       0.34    9.4   0.0    1.1  1  SHMT             Serine hydroxymethyltransferase


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.0   1.4e-25   8.4e-22      56     310 ..      87     347 ..      81     369 .. 0.83

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 1.4e-25
                  HT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTT CS
  Aminotran_5  56 inaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtG 153
                  ++a+   e+++  +t+  +   a +++++  ++++++v + +    +   + la ++g++++ +p d +  l+ldel+++l+ +++lv +++v   +G
   KIR61848.1  87 LGARP-GEVVVSDSTSVNLYKLAAAALDAAGDRRTVLVDAEDFPTDRYVLEGLAAARGLTLRLLPSDLDEGLRLDELRAALDGDVALVVLSAVAYRSG 183
                  56664.6777777777655445555557799******************************************************************* PP

                  EB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTT.TTSSTT-.EEEEEEHHHHHTS...SS.STTSEEEEET.TEEEEHCTTGG CS
  Aminotran_5 154 tiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghK.llgPtGi.Gvlyvrkellekl.eplllggemveevsl.eettfaeapsk 247
                   + ++++++++a+++ga vl D + avg  pi+++++g+D+++  + K l+g +G   +lyvr+el+ +l +p+++  +  ++  +  ++  a    +
   KIR61848.1 184 ALLDMAAVNAAARQVGATVLWDLSHAVGAVPIELAATGADLAVGCTYKyLNGGPGApAFLYVRRELQSRLrQPIQGWFGRRDQFGMgPGYDPAPDLDR 281
                  ************************************************98888887478***********7777777777888888888887777789 PP

                  GS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCT...STTEEEES.-B-CTCBS CS
  Aminotran_5 248 feaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlks...lpgvrlygpdkaerras 310
                  f  GTp + ++  l  al+ l+e g+e+++++ ++l e ++   ++     g+r++ p+ a+rr s
   KIR61848.1 282 FLVGTPSILALAPLDPALDVLAEAGIERVRAKGRRLGELIVTLADAwltPYGFRVASPRGADRRGS 347
                  **********************************99887665444321134555555555555555 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.8e-06     0.023     125     202 ..     157     235 ..     117     263 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.8e-06
                      TSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-GG.GGT-SEEEEETTTTTTC CS
  Cys_Met_Meta_PP 125 sdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqrpl.klgaDivvhSaTKylgG 202
                        l+el++a++  + lv l +++     ++D++++ ++a+++g++v+ D + a +++   l + gaD+ v  + Kyl+G
       KIR61848.1 157 LRLDELRAALDGDVALVVLSAVAYRSGALLDMAAVNAAARQVGATVLWDLSHAVGAVPIELaATGADLAVGCTYKYLNG 235
                      56789999********************************************9996644441679*************9 PP

>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   5.7e-05      0.34     171     242 ..     171     241 ..     154     259 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 5.7e-05
                 SEEEEE-SST-..S---HHHHHHHHHHTT-EEEEE-GGGHHHHHTTSS--GCCTSSEEEEESSSTT-S-S-EEE CS
        SHMT 171 klivaGtsays..rlidyarlreiadevgayllvdmahiaGlvaagvipsPfeyadvvtttthktlrGprggli 242
                  l+v  + ay    l+d a +   a +vga++l d++h  G v  ++ ++    ad+    t+k l+G  g+  
  KIR61848.1 171 ALVVLSAVAYRsgALLDMAAVNAAARQVGATVLWDLSHAVGAVPIELAAT---GADLAVGCTYKYLNGGPGAPA 241
                 5677778888522589**************************99999876...588889999999999877633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2955.24
//
Query:       KIR61849.1  [L=442]
Description: coproporphyrinogen III oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-17   62.9   0.0    6.2e-17   62.5   0.0    1.2  1  Radical_SAM  Radical SAM superfamily
    4.6e-07   29.8   0.1    8.4e-07   29.0   0.1    1.5  1  HemN_C       HemN C-terminal domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   6.9e-21   6.2e-17       3     165 ..      53     224 ..      51     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 6.9e-21
                  EESEESS--TTTSCCTT...HHHHHHHHHHHHHHHHHHHHHHH.HHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC......CCTEEEEEEECSSCHG CS
                  xxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpet...vrregrgrslsveeileevkelk.aekgvkevilgggepllypdfvellerlakla......vpgiritvetngtlpd 90 
                  ++++C +rC fC+  +     +  ++++ +++++ +e v  +   + g   v +ggg+p++     el+e             pg+ ++vet++ + +
   KIR61849.1  53 HVPFCEMRCGFCNLFTRtgaPAEQVTAYLRQLRRQAERVADALgGDAGYARVAFGGGTPTYLTAG-ELTELFDIATstlgarLPGVPLSVETSPATAT 149
                  689***********9888994444444445444444444444445788*************8533.33333333335578889*************** PP

                  HHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET.EEEEEEEBTTTSHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  91 eeklerllelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikr.vvdrivglpGendeeleelle 165
                  +e l+ l+  g++rvs+g++++ d    +  +r++ + ev +al ++r+a i+  +vd i+g+ G++ +++++ le
   KIR61849.1 150 PERLAVLAAHGTTRVSIGVQSFLDA-EARAAGRPQRRAEVEAALGAIRDAAIPLlNVDLIYGIDGQTADTWRQSLE 224
                  *************************.56666699***********************************9998876 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   9.4e-11   8.4e-07       1      65 [.     356     417 ..     356     418 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 9.4e-11
      HemN_C   1 lspedrleEeiilgLRlreGldlaafeqrfgldleellaaaleklqeqGLLeldggrlrltprGr 65 
                 l+ +++ +++++  L   eG+d aa+++rfg++  +++   l +l e+G+   ++g+lrltp+G+
  KIR61849.1 356 LDGTEQRRRWLLKSLLRAEGVDAAAYAARFGVAPGDDFPE-LGRLVERGWA--TDGGLRLTPAGL 417
                 56789********************************999.**********..99*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2864.53
//
Query:       KIR61850.1  [L=315]
Description: hypothetical protein TK50_30775 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0012   18.8   4.9       0.81    9.9   0.1    3.5  3  LRR_6     Leucine Rich repeat
     0.0026   18.1   0.1        1.2    9.6   0.1    4.1  5  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.54   4.9e+03      17      24 .]     223     230 ..     222     230 .. 0.91
   2 !    9.4   0.2   0.00013       1.2       5      24 .]     238     257 ..     236     257 .. 0.92
   3 !    9.9   0.1   9.1e-05      0.81       3      18 ..     263     278 ..     261     279 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.54
       LRR_6  17 DeGaeaLa 24 
                 De aeaLa
  KIR61850.1 223 DEIAEALA 230
                 99*****8 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00013
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 L+ LdLs   ++D Ga aLa
  KIR61850.1 238 LELLDLSLGTLSDRGALALA 257
                 788****************8 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 9.1e-05
       LRR_6   3 thLteLdLsgNdIgDe 18 
                 thLt+LdLs++ ++De
  KIR61850.1 263 THLTKLDLSHHYVSDE 278
                 8*********977776 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.062   5.6e+02      19      32 ..      93     104 ..      85     109 .. 0.78
   2 ?   -2.0   0.0      0.62   5.6e+03      22      30 ..     128     136 ..     117     139 .. 0.67
   3 ?   -0.9   0.0      0.28   2.5e+03      21      30 ..     173     183 ..     164     186 .. 0.76
   4 ?    0.4   0.0      0.11   9.7e+02       8      30 ..     191     216 ..     190     221 .. 0.74
   5 !    9.6   0.1   0.00014       1.2       2      33 ..     237     273 ..     236     278 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.062
                 HHH-TT--EEE-.- CS
       LRR_4  19 leklpnLkeLdLsg 32 
                 ++ lpnL+ L L g
  KIR61850.1  93 PR-LPNLTALFL-G 104
                 55.999999988.4 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.62
                 -TT--EEE- CS
       LRR_4  22 lpnLkeLdL 30 
                  p+L++L +
  KIR61850.1 128 YPKLEVLRV 136
                 577777765 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.28
                 H.-TT--EEE- CS
       LRR_4  21 k.lpnLkeLdL 30 
                 + lp L+ L L
  KIR61850.1 173 SeLPALTDLEL 183
                 33999999887 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.11
                 --SS---E-S-.HH.H.-TT--EEE- CS
       LRR_4   8 LsnNqltdipl.le.k.lpnLkeLdL 30 
                 ++++ + d+ + l+ + +p L+ L L
  KIR61850.1 191 CGDTTVDDLAPlLAgQrFPALRRLGL 216
                 677788888885447779***99987 PP

  == domain 5  score: 9.6 bits;  conditional E-value: 0.00014
                 S--EEE--.SS---E-S-HH....H.-TT--EEE-.-S CS
       LRR_4   2 nLevLdLs.nNqltdiplle....k.lpnLkeLdLsgN 33 
                 +Le LdLs +  l+d + l+    + l++L++LdLs+ 
  KIR61850.1 237 RLELLDLSlG-TLSDRGALAlaggQpLTHLTKLDLSHH 273
                 6999999999.999989966779988*********886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2203.85
//
Query:       KIR61851.1  [L=310]
Description: cytoplasmic protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   15.6   0.0        2.2    8.8   0.0    3.4  4  LRR_4     Leucine Rich repeats (2 copies)
      0.072   13.2   2.9       0.18   11.9   0.1    2.6  2  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.038   3.4e+02      21      36 ..     122     137 ..     114     144 .. 0.71
   2 ?   -1.1   0.0      0.33     3e+03      20      30 ..     169     178 ..     162     183 .. 0.78
   3 ?   -2.3   0.0      0.75   6.8e+03      22      28 ..     203     209 ..     194     213 .. 0.74
   4 ?    8.8   0.0   0.00025       2.2       2      33 ..     232     268 ..     231     273 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.038
                 H-TT--EEE-.-S--- CS
       LRR_4  21 klpnLkeLdLsgNnli 36 
                   p+L++L++ g n +
  KIR61851.1 122 AYPSLEVLWVRGANEL 137
                 4699*****9665565 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.33
                 HH-TT--EEE- CS
       LRR_4  20 eklpnLkeLdL 30 
                   lp L+ L L
  KIR61851.1 169 D-LPALERLEL 178
                 4.999999987 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.75
                 -TT--EE CS
       LRR_4  22 lpnLkeL 28 
                 lp L++L
  KIR61851.1 203 LPALRHL 209
                 8889988 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.00025
                 S--EEE--.SS---E-S-...HH..H-TT--EEE-.-S CS
       LRR_4   2 nLevLdLs.nNqltdipl...le..klpnLkeLdLsgN 33 
                 +LevLdLs +  ltd +    l+   l +L+ LdL++ 
  KIR61851.1 232 RLEVLDLSkG-VLTDAGAealLAgrPLAHLRRLDLHHH 268
                 79******55.9***99977633755*********654 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     2e-05      0.18       5      23 ..     233     251 ..     232     252 .. 0.94
   2 ?    0.5   0.4     0.095   8.5e+02       4      10 ..     259     265 ..     257     268 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2e-05
       LRR_6   5 LteLdLsgNdIgDeGaeaL 23 
                 L+ LdLs   ++D+GaeaL
  KIR61851.1 233 LEVLDLSKGVLTDAGAEAL 251
                 899***************9 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.095
       LRR_6   4 hLteLdL 10 
                 hL+ LdL
  KIR61851.1 259 HLRRLDL 265
                 9*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2379.41
//
Query:       KIR61852.1  [L=167]
Description: hypothetical protein TK50_30785 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.5   0.9       0.18   11.8   0.9    1.4  1  SLATT_1   SMODS and SLOG-associating 2TM effector domain 1
       0.31   11.5   1.3       0.45   11.0   0.7    1.6  2  DUF4179   Domain of unknown function (DUF4179)


Domain annotation for each model (and alignments):
>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.9     2e-05      0.18      26      74 ..       9      58 ..       2      78 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2e-05
     SLATT_1 26 rwrlllillellalllaalr.afgelsvdlvgvlaavaaallaWlelkqy 74
                r r++++l+ +la+l ++l+ a ++l ++   +++ ++aa+++W+   + 
  KIR61852.1  9 RRRAVTLLVAALAALGVTLGfASPALAIAHSSAASQLSAAGISWTSSGNC 58
                445666677777777777776779999999**************976554 PP

>> DUF4179  Domain of unknown function (DUF4179)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.7     5e-05      0.45       5      34 ..       9      38 ..       5      68 .. 0.81
   2 ?   -2.8   0.0         1   8.9e+03      24      34 ..     124     134 ..     110     154 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF4179  5 rikkvaaaaaalvllllssrllspalAsal 34
                r++ v++ +aal++l ++ +++spalA a 
  KIR61852.1  9 RRRAVTLLVAALAALGVTLGFASPALAIAH 38
                567788888888888889*********776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1
                 XXXXXXXXXXX CS
     DUF4179  24 rllspalAsal 34 
                 +++s  +A + 
  KIR61852.1 124 NYISAHFAYVG 134
                 45555555333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1118.94
//
Query:       KIR61853.1  [L=465]
Description: hypothetical protein TK50_30790 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00064   19.8  14.2    0.00064   19.8  14.2    5.6  4  DivIVA          DivIVA protein
     0.0072   16.4   1.8     0.0072   16.4   1.8    6.0  6  Cep57_CLD_2     Centrosome localisation domain of PPC89
  ------ inclusion threshold ------
      0.012   15.7   4.8      0.012   15.7   4.8    6.1  6  BRE1            BRE1 E3 ubiquitin ligase
      0.013   15.1   3.5      0.013   15.1   3.5    5.4  6  DUF2968         Protein of unknown function (DUF2968)
       0.21   10.4  66.7       0.54    9.1   4.2    3.5  3  Spc7            Spc7 kinetochore protein
       0.77   10.6   2.5        1.4    9.7   0.1    2.6  3  Ntox50          Bacterial toxin 50
       0.92    9.4 102.1       0.67    9.8  48.8    3.7  3  Apolipoprotein  Apolipoprotein A1/A4/E domain
        3.2    8.2  11.6        2.3    8.7   0.5    5.3  6  FlaC_arch       Flagella accessory protein C (FlaC)
        8.6    6.7  71.3       0.63   10.4   7.8    5.3  5  YlqD            YlqD protein


Domain annotation for each model (and alignments):
>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8  14.2   3.2e-07   0.00064      10     113 ..      19     130 ..      17     160 .. 0.75
   2 ?  -11.4  25.6         9   1.8e+04      51     124 ..     162     232 ..     147     258 .. 0.42
   3 ?    1.0  17.4      0.21   4.1e+02      41     128 ..     254     341 ..     241     343 .. 0.80
   4 ?    5.1  12.0     0.011        23      27      96 ..     336     405 ..     333     450 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.2e-07
                 ---EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  10 eFkkklrGYdedeVdeFLdqvakdyeallkeneelkekvkeleeklkeykeleetLkktlvvaqe........taeevkanakkeaeliikeAekkaek 100
                 +F+++lrGYd+ +Vd++ +qv  +  al  ++++ + ++++l+ + +  +   ++L++      +        + +++ a a+k+a  i++ A ++a +
  KIR61853.1  19 SFEQALRGYDKRQVDRYVEQVEASASALTADRDRAQHQLRNLTLQFQALQAEVSELRQRPAQVDKasfrdlgpMVDQILALAEKQAAAITDTAAQRAGD 117
                 69*************************************999999999999999998876555551112222245666777777777777777666666 PP

                 XXXXXXXXXXXXX CS
      DivIVA 101 iveeaeeeakkia 113
                 +++eae+ + +++
  KIR61853.1 118 LQAEAERILVEAR 130
                 6665555444443 PP

  == domain 2  score: -11.4 bits;  conditional E-value: 9
                 CCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  51 leeklkeykeleetLkktlvvaqetaeevkanakkeaeliikeAekkaekiveeaeeeakkiaeeieelkrqar 124
                 +e +l++ +el e+L+    +a+e a++  +  ++   + +++A+++ae++ + a+ ++++     +  + q++
  KIR61853.1 162 AEAQLADVQELVEQLRTDGEAAHEQAQQEAKRINELTAQQVEQARAAAEALTKAARTQIQQEV---QAARAQSQ 232
                 444444444444444443333333333333333333333334444444444433333322211...11111111 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.21
                 HHHHHHHHHCCCCTX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  41 neelkekvkeleekl.keykeleetLkktlvvaqetaeevkanakkeaeliikeAekkaekiveeaeeeakkiaeeieelkrqarlfrq 128
                  +el e  +++e+++  + + +ee++   +  aq+ + ev++ a ++a+   ++ ++ ++++    ++ + ++++e++  ++q ++ r 
  KIR61853.1 254 EQELAEHRAAAERDVaGQLTAAEEKIATLIAEAQQYSTEVRKRADEQATAHQEQLTAVQQEV-GSQRQALTQLHTELDTAQQQLAQIRR 341
                 4555555555555551588999**********************999998877777666665.7889999*************999885 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHHHHHHHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  27 LdqvakdyeallkeneelkekvkeleeklkeykeleetLkktlvvaqetaeevkanakkeaeliikeAek 96 
                 L+q+ ++  al +e+++l++++ e +++l   +++ e+ +++  +a++ a++v+a  ++ea+ + + A +
  KIR61853.1 336 LAQIRREGAALENEVNQLQQRLVEVRQELTAEANRLEEARNAADSAERHAKDVRARVQREAKRVADLAAA 405
                 889999999********************9999999999**********************988766654 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.8   3.6e-06    0.0072      15      59 ..      32      76 ..      29      88 .. 0.92
   2 ?   -2.6   5.1         3     6e+03      37      61 ..     126     152 ..     116     161 .. 0.68
   3 ?   -5.6  11.2         9   1.8e+04      11      53 ..     158     200 ..     149     251 .. 0.89
   4 ?   -1.8   1.7       1.7   3.3e+03      29      56 ..     262     288 ..     225     301 .. 0.62
   5 !    9.2  11.1   0.00062       1.2       9      64 ..     305     360 ..     297     375 .. 0.91
   6 ?   -0.3   0.2      0.59   1.2e+03      10      26 ..     369     385 ..     360     396 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.6e-06
  Cep57_CLD_2 15 ltrklqvheeelkrLnkERdsalrqLgvAyeelneLkaevealrk 59
                 ++r ++  e    +L ++Rd+a +qL++  +  + L+aev  lr+
   KIR61853.1 32 VDRYVEQVEASASALTADRDRAQHQLRNLTLQFQALQAEVSELRQ 76
                 56778888899999*****************************98 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3
  Cep57_CLD_2  37 lrqLgv.AyeelneLkaevealrkE.L 61 
                  l   ++ A + l +L ae+ a+r E +
   KIR61853.1 126 LVEAREhAAQALHDLEAELSARRAEqE 152
                  5555555888899999***99999952 PP

  == domain 3  score: -5.6 bits;  conditional E-value: 9
  Cep57_CLD_2  11 rLdsltrklqvheeelkrLnkERdsalrqLgvAyeelneLkae 53 
                  r + ++ +l+  +e+ ++L+++ + a  q ++   ++neL+a+
   KIR61853.1 158 RRSAAEAQLADVQELVEQLRTDGEAAHEQAQQEAKRINELTAQ 200
                  55667888999999**************************985 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.7
  Cep57_CLD_2  29 LnkERdsalrqLgvAyeelneLkaevea 56 
                   ++ERd  + qL  A e +  L ae   
   KIR61853.1 262 AAAERDV-AGQLTAAEEKIATLIAEAQQ 288
                  2336664.35666666666666666555 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.00062
  Cep57_CLD_2   9 qnrLdsltrklqvheeelkrLnkERdsalrqLgvAyeelneLkaevealrkELkeq 64 
                  q++L+ ++++++++  +l +L +E d+a +qL + ++e   L +ev+ l++ L e 
   KIR61853.1 305 QEQLTAVQQEVGSQRQALTQLHTELDTAQQQLAQIRREGAALENEVNQLQQRLVEV 360
                  99************************************************986554 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.59
  Cep57_CLD_2  10 nrLdsltrklqvheeel 26 
                  nrL+ ++  + ++e + 
   KIR61853.1 369 NRLEEARNAADSAERHA 385
                  44444444444444444 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.3     0.026        51       8      45 ..      46      83 ..      36      87 .. 0.75
   2 ?   -7.9  15.2         9   1.8e+04      41      90 ..     149     198 ..     118     230 .. 0.48
   3 ?   -9.8  17.0         9   1.8e+04       8      85 ..     151     231 ..     149     256 .. 0.66
   4 ?    1.8   5.3      0.12   2.5e+02      10      78 ..     255     325 ..     251     326 .. 0.75
   5 ?   15.7   4.8   5.9e-06     0.012      12      66 ..     301     355 ..     295     357 .. 0.92
   6 ?   12.3   6.6   6.6e-05      0.13       1      79 [.     325     403 ..     325     410 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.026
        BRE1  8 lekafeelseqlskkvkeltileekklrleaekakadq 45
                l++ ++ ++ ql++++ ++++l+ +++ l +  a+ d+
  KIR61853.1 46 LTADRDRAQHQLRNLTLQFQALQAEVSELRQRPAQVDK 83
                67788888888888888888888888888776666555 PP

  == domain 2  score: -7.9 bits;  conditional E-value: 9
        BRE1  41 akadqkyfaamrskdalenelkkLnkllsKsselieqLkelekefvrklk 90 
                 a++++ y + + + +a  ++++ L ++l    e  ++  + e++ +++l+
  KIR61853.1 149 AEQEKAYEERRSAAEAQLADVQELVEQLRTDGEAAHEQAQQEAKRINELT 198
                 33333333333333333333333333333333333333333333333222 PP

  == domain 3  score: -9.8 bits;  conditional E-value: 9
        BRE1   8 lekafeelseqlskkvkeltil.eekklrleaekakadqkyfaamrskdalenelkkLnkllsKssel..ieqLkelekef 85 
                  eka+ee ++++++ +++++ l e+  +  ea  ++a+q+ + ++    +   + ++  + l+K + +  +++ + + ++ 
  KIR61853.1 151 QEKAYEERRSAAEAQLADVQELvEQLRTDGEAAHEQAQQEAKRINELTAQQVEQARAAAEALTKAARTqiQQEVQAARAQS 231
                 578888888888888888877645566667777778888887777777777777777777777765430033333333333 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.12
        BRE1  10 kafeelseqlskkvk.eltileekklrleaekakadqky.faamrskdalenelkkLnkllsKsselieqL 78 
                 ++  e++++++  v+ +lt+ eek++ l ae ++   +  + a+ +  a + +l ++++ +  +++  +qL
  KIR61853.1 255 QELAEHRAAAERDVAgQLTAAEEKIATLIAEAQQYSTEVrKRADEQATAHQEQLTAVQQEVGSQRQALTQL 325
                 555555555555443389999**********9999988735688888888888888888888888888887 PP

  == domain 5  score: 15.7 bits;  conditional E-value: 5.9e-06
        BRE1  12 feelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnk 66 
                   +++eql + ++e+ ++ + +++l++e + a+q+  +++r+  alene+++L++
  KIR61853.1 301 ATAHQEQLTAVQQEVGSQRQALTQLHTELDTAQQQLAQIRREGAALENEVNQLQQ 355
                 567899***********************************************97 PP

  == domain 6  score: 12.3 bits;  conditional E-value: 6.6e-05
        BRE1   1 lqkELvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLk 79 
                 l +EL+  +++  + +++  ++ +e+  l++++  + +e + + +   +a+++ d+ e   k +++ ++++++ +++L 
  KIR61853.1 325 LHTELDTAQQQLAQIRREGAALENEVNQLQQRLVEVRQELTAEANRLEEARNAADSAERHAKDVRARVQREAKRVADLA 403
                 679*******************************************************************999998875 PP

>> DUF2968  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   3.5   6.6e-06     0.013     128     178 ..      21      71 ..       9      76 .. 0.89
   2 ?   -8.4  25.7         9   1.8e+04      88     178 ..     101     201 ..      91     201 .. 0.54
   3 ?  -10.7  25.3         9   1.8e+04      91     164 ..     183     257 ..     180     262 .. 0.63
   4 ?  -26.2  44.1         9   1.8e+04      85     171 ..     254     315 ..     200     336 .. 0.39
   5 ?   -4.7  28.8       8.2   1.6e+04      98     162 ..     298     362 ..     268     380 .. 0.43
   6 ?   -4.2  18.9       5.8   1.2e+04     121     171 ..     321     371 ..     318     407 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.6e-06
     DUF2968 128 dlavarqQeqavaerQkqarkeaaaLeaqreaaqaqlralqrqirqLqaqq 178
                 ++a++   + +v +  +q+ + a+aL a+r++aq+qlr+l  q ++Lqa+ 
  KIR61853.1  21 EQALRGYDKRQVDRYVEQVEASASALTADRDRAQHQLRNLTLQFQALQAEV 71 
                 5667777788999999********************************986 PP

  == domain 2  score: -8.4 bits;  conditional E-value: 9
     DUF2968  88 arqtaelaeveirri.kleaqkaqlerqiaase.araerLqadlavar.qQeqavaerQkqarke.......aaaLeaqreaaqaqlralqrqirqLqa 176
                 ++q+a++ ++  +r+  l+a+ +++  +  +++ + ++ L+a+l+ +r +Qe+a +er ++a ++       +++L+++ eaa++q ++  ++i++L a
  KIR61853.1 101 EKQAAAITDTAAQRAgDLQAEAERILVEAREHAaQALHDLEAELSARRaEQEKAYEERRSAAEAQladvqelVEQLRTDGEAAHEQAQQEAKRINELTA 199
                 566666666666665345555555444443333033455666666555234444444444433331111111678888888888888888889998888 PP

     DUF2968 177 qq 178
                 qq
  KIR61853.1 200 QQ 201
                 75 PP

  == domain 3  score: -10.7 bits;  conditional E-value: 9
     DUF2968  91 taelaeveirri.kleaqkaqlerqiaasearaer..LqadlavarqQeqavaerQkqarkea.aaLeaqreaaqaql 164
                 ++e a++e +ri +l aq+    r  a++ ++a+r  +q++++ ar+Q q+  +   q r ++ + +++ r+aa+++l
  KIR61853.1 183 AHEQAQQEAKRInELTAQQVEQARAAAEALTKAARtqIQQEVQAARAQSQQELA---QWRVNVeREINERRAAAEQEL 257
                 567788999998459999999999999988888752367788888888665332...222222023445555555555 PP

  == domain 4  score: -26.2 bits;  conditional E-value: 9
     DUF2968  85 adfarqtaelaeveirrikleaqkaqlerqiaasearaerLqadlavarqQeqavaerQkqarkeaaaLeaqreaaqaqlralqrqi 171
                 ++     ++ ae ++ + +l a ++++  +ia++++  +++                         +  ++q +a q+ql+a+q+++
  KIR61853.1 254 EQELAEHRAAAERDV-AGQLTAAEEKIATLIAEAQQYSTEV------------------------RKRADEQATAHQEQLTAVQQEV 315
                 111111222223332.1233333333333333333333322........................2222223333333333333333 PP

  == domain 5  score: -4.7 bits;  conditional E-value: 8.2
     DUF2968  98 eirrikleaqkaqlerqiaasearaerLqadlavarqQeqavaerQkqarkeaaaLeaqreaaqa 162
                 + +++  + q + +++++  +++ +++L+++l+ a+qQ +++ ++ +++ +e+++L++   ++++
  KIR61853.1 298 DEQATAHQEQLTAVQQEVGSQRQALTQLHTELDTAQQQLAQIRREGAALENEVNQLQQRLVEVRQ 362
                 11112222222233344444444444444444444444444444444444444444444444444 PP

  == domain 6  score: -4.2 bits;  conditional E-value: 5.8
     DUF2968 121 raerLqadlavarqQeqavaerQkqarkeaaaLeaqreaaqaqlralqrqi 171
                  +++L+++l+ a+qQ +++ ++ +++ +e+++L++   +++++l+a  +++
  KIR61853.1 321 ALTQLHTELDTAQQQLAQIRREGAALENEVNQLQQRLVEVRQELTAEANRL 371
                 456666666666666666666666666666666666666666665544443 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.2   0.00027      0.54     142     230 ..      30     119 ..      29     131 .. 0.75
   2 ?   -4.5  28.9       3.8   7.6e+03     147     270 ..     114     237 ..     101     255 .. 0.50
   3 ?    8.8  28.7   0.00034      0.68     123     264 ..     229     378 ..     227     403 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00027
        Spc7 142 egleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelka.eieekkkelaelqeqle 230
                  ++++ +e++e+ ++ L+++++ ++  l +l+ ++++l++e+ +l+++ +++++    +L  + +++ +l + + ++  +  a++  +l+
  KIR61853.1  30 RQVDRYVEQVEASASALTADRDRAQHQLRNLTLQFQALQAEVSELRQRPAQVDKASFRDLGPMVDQILALAEkQAAAITDTAAQRAGDLQ 119
                 6788999******************************************99888777777666655544433034444444444445555 PP

  == domain 2  score: -4.5 bits;  conditional E-value: 3.8
        Spc7 147 nlegleedke.lLekqeeeldellpeleeeka....eleeeleklqeaaeelesid.keeLeelreelaelkaeieekkkelaelqeqleeleekieel 239
                 +  +l++++e  L + +e + ++l++le+e +    e e+ +e +++ a+e +  d +e +e+lr + ++++++ ++  k+++el++q  e++ + +e+
  KIR61853.1 114 RAGDLQAEAErILVEAREHAAQALHDLEAELSarraEQEKAYE-ERRSAAEAQLADvQELVEQLRTDGEAAHEQAQQEAKRINELTAQQVEQARAAAEA 211
                 5555555443145555555555555555555522103222222.2333444455666777788888888888888888888888776554444443332 PP

        Spc7 240 ..keqkseleeeiaeaervleeckgwsesevsr 270
                   k+ ++++++e+++a       +  s++e+ +
  KIR61853.1 212 ltKAARTQIQQEVQAA-------RAQSQQELAQ 237
                 1122333333333333.......3333333333 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00034
        Spc7 123 lqakkdWYeWRmqllegLke.......gleenlegleedke.lLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelka 213
                  q++++  +WR +   ++ e       +l e+ ++ e+d + +L++ ee++ +l  e +++ +e++++++++ +a++e  +  ++e+ + r++l++l++
  KIR61853.1 229 AQSQQELAQWRVNVEREINErraaaeqELAEHRAAAERDVAgQLTAAEEKIATLIAEAQQYSTEVRKRADEQATAHQEQLTAVQQEVGSQRQALTQLHT 327
                 555555556666666666541111111455555555666444799999999999999999999999999888887777666668888888888888888 PP

        Spc7 214 eieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgws 264
                 e++  +++la+ +++ ++le+++++l+++  e+++e+ ++ + lee ++  
  KIR61853.1 328 ELDTAQQQLAQIRREGAALENEVNQLQQRLVEVRQELTAEANRLEEARNAA 378
                 888888888888888888888888888888888888887777777777654 PP

>> Ntox50  Bacterial toxin 50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         9   1.8e+04      20      45 ..      43      68 ..      28      77 .. 0.67
   2 ?    9.7   0.1   0.00072       1.4      10      53 ..     149     192 ..     141     223 .. 0.83
   3 ?   -0.7   0.1       1.3   2.5e+03      24      63 ..     326     364 ..     273     377 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 9
      Ntox50 20 kSyllidskeaqellkkyagtgevvk 45
                 S l+ d + aq+ l +   ++++++
  KIR61853.1 43 ASALTADRDRAQHQLRNLTLQFQALQ 68
                47777788888877777666666555 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00072
      Ntox50  10 ikghknYeegkSyllidskeaqellkkyagtgevvkdrkgkwrn 53 
                  +++k Yee +S    +  + qel+++   +ge++ ++ ++  +
  KIR61853.1 149 AEQEKAYEERRSAAEAQLADVQELVEQLRTDGEAAHEQAQQEAK 192
                 57789*****************************9995554333 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.3
      Ntox50  24 lidskeaqellkkyagtgevvkdrkgkwrnkevvdfgevi 63 
                   + ++aq+ l ++ ++g ++++ + +  ++ +v++ +  
  KIR61853.1 326 HTELDTAQQQLAQIRREGAALEN-EVNQLQQRLVEVRQEL 364
                 34456677777777777777777.4555566666666655 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  10.9     0.017        34     103     187 ..      30     124 ..      20     126 .. 0.80
   2 ?    9.8  48.8   0.00034      0.67       7     173 ..     109     278 ..     108     284 .. 0.84
   3 ?    3.9  42.3     0.022        45      32     183 ..     243     401 ..     241     411 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.017
                     HHHHHHHHHHHHHHHHHCHHHHHHH..........HHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS--XXXXXXXXXXXX CS
  Apolipoprotein 103 elrerlerhvealkarlapyveelr..........qklaerleelkeslaphaeeveerlssrveelrekleeqaeelrerleanleelkaqlea 187
                        +r  + vea  + l++++++++          q l++++ el+++ a+  +++   l   v+++ + +e+qa+++++ + + + +l+a+ e+
      KIR61853.1  30 RQVDRYVEQVEASASALTADRDRAQhqlrnltlqfQALQAEVSELRQRPAQVDKASFRDLGPMVDQILALAEKQAAAITDTAAQRAGDLQAEAER 124
                     44566667777777777777777778888888888789999999999999999999999999999999999999999999999999999998775 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00034
                     CCHHHHHCCHHHCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHC CS
  Apolipoprotein   7 delkayaeeleeqlaplaqelrdrlskeleelrarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavya 101
                     d+++++a +l++  +++  e+r+  +++l +l a+l+a   e+ ++ e++r+++++ql+  ++el ++l +  e+ +e+++++a+ + e  a+  
      KIR61853.1 109 DTAAQRAGDLQAEAERILVEAREHAAQALHDLEAELSARRAEQEKAYEERRSAAEAQLA-DVQELVEQLRTDGEAAHEQAQQEAKRINELTAQQV 202
                     78999999999999999999999999999999999999999999999999999999996.59999999999999999999999999999999999 PP

                     HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-T....TSHHHHHS CS
  Apolipoprotein 102 eelrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelreklee....qaeelrer 173
                     e++r  +e+ ++a +++++  v+ +r++ +++l +++ +++ +  e ++++++++ e r+++e+    q+ + +e+
      KIR61853.1 203 EQARAAAEALTKAARTQIQQEVQAARAQSQQELAQWRVNVEREINERRAAAEQELAEHRAAAERdvagQLTAAEEK 278
                     9999999999999999999999999999999999999888888777776666666666666666433355555555 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.022
                     HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHH......HHHHHHHHHHHHHHHHC CS
  Apolipoprotein  32 skeleelrarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaee......lrerlerhvealkarla 120
                     + e +e ra+ ++el e ra+ e +++   +  ++++  l ++ + y+ e+r+r++++a + qeql+++++e      + ++l +++++ +++la
      KIR61853.1 243 EREINERRAAAEQELAEHRAAAERDVAGQLTAAEEKIATLIAEAQQYSTEVRKRADEQATAHQEQLTAVQQEvgsqrqALTQLHTELDTAQQQLA 337
                     56666777777888888888888888888888888888888888889999999*******************99888877888888999999999 PP

                     HHHHHHHHHHHHHHHHHHH-----..-----SS..SHHHHHHHTS-TTSHHHHHS--XXXXXXXX CS
  Apolipoprotein 121 pyveelrqklaerleelkeslaphaeeveerls..srveelrekleeqaeelrerleanleelka 183
                      ++ e+ + l+ ++ +l+++l +  +e+ ++++  ++++++ +++e+ a+++r+r+++ ++++ +
      KIR61853.1 338 QIRREGAA-LENEVNQLQQRLVEVRQELTAEANrlEEARNAADSAERHAKDVRARVQREAKRVAD 401
                     99999997.77777777777777777776555522378888899999999999999999988765 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.25     5e+02       8      29 ..      56      77 ..      51      89 .. 0.76
   2 ?   -0.6   0.1       0.9   1.8e+03      28      28 ..     156     156 ..     135     186 .. 0.56
   3 ?   -1.0   0.0       1.2   2.4e+03      11      32 ..     274     295 ..     268     299 .. 0.77
   4 ?    8.7   0.5    0.0011       2.3       8      40 ..     321     353 ..     314     360 .. 0.76
   5 ?    3.7   0.4     0.042        84       5      27 ..     346     368 ..     344     377 .. 0.81
   6 ?   -1.6   0.0       1.8   3.6e+03       8      39 ..     370     401 ..     362     402 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.25
   FlaC_arch  8 klsklsteletvkkeneelsks 29
                +l +l  +++ +++e +el++ 
  KIR61853.1 56 QLRNLTLQFQALQAEVSELRQR 77
                6778888889999999999876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.9
   FlaC_arch  28 k 28 
                 +
  KIR61853.1 156 E 156
                 1 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.2
   FlaC_arch  11 klsteletvkkeneelsksvee 32 
                   + +++t+ +e ++ s++v +
  KIR61853.1 274 AAEEKIATLIAEAQQYSTEVRK 295
                 5677888998999988888865 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0011
   FlaC_arch   8 klsklsteletvkkeneelsksveelkenVkdl 40 
                  l +l tel+t+++++ +++ +   l+ +V++l
  KIR61853.1 321 ALTQLHTELDTAQQQLAQIRREGAALENEVNQL 353
                 577888899999999999998888888888443 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.042
   FlaC_arch   5 lEnklsklsteletvkkeneels 27 
                 lEn++++l+ +l  v++e+    
  KIR61853.1 346 LENEVNQLQQRLVEVRQELTAEA 368
                 9***********99999987655 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 1.8
   FlaC_arch   8 klsklsteletvkkeneelsksveelkenVkd 39 
                 +l++     +++++  ++++  v++  ++V d
  KIR61853.1 370 RLEEARNAADSAERHAKDVRARVQREAKRVAD 401
                 45555557788899999999888876666655 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   3.6     0.084   1.7e+02      26      70 ..      47      76 ..      22     126 .. 0.52
   2 ?    5.6  12.5    0.0095        19      20      93 ..     128     201 ..     122     209 .. 0.91
   3 ?   10.4   7.8   0.00031      0.63      12      66 ..     211     265 ..     207     273 .. 0.84
   4 ?    5.2  13.9     0.013        26      25      88 ..     275     338 ..     257     342 .. 0.61
   5 ?    7.9  10.9     0.002       3.9      18      83 ..     318     382 ..     315     409 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.084
        YlqD 26 qaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekeks 70
                +a+ ++++++l++L++q + l +e+++                ++
  KIR61853.1 47 TADRDRAQHQLRNLTLQFQALQAEVSE---------------LRQ 76
                223333333333333333333333322...............222 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0095
        YlqD  20 elqqqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkqllqqleqvqkLelgs 93 
                 e+ ++  ++++ l+ el+  + +++++ +e ++  ++q + +qe ve+ + + +++ +q++q+ +++++L+ ++
  KIR61853.1 128 EAREHAAQALHDLEAELSARRAEQEKAYEERRSAAEAQLADVQELVEQLRTDGEAAHEQAQQEAKRINELTAQQ 201
                 6677889999***********************9999*********************************9866 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00031
        YlqD  12 ivTeklKeelqqqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqve 66 
                  +T++ ++++qq++qa+  q ++el+q++++ +r i+e +   +q+ +e ++ +e
  KIR61853.1 211 ALTKAARTQIQQEVQAARAQSQQELAQWRVNVEREINERRAAAEQELAEHRAAAE 265
                 59*************************************9977775555554444 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.013
        YlqD  25 lqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkqllqqleqvqk 88 
                  +++i +l  e qq +++ ++  +e+++ +++q +++q++v  +++ +++   +l+   +q+ +
  KIR61853.1 275 AEEKIATLIAEAQQYSTEVRKRADEQATAHQEQLTAVQQEVGSQRQALTQLHTELDTAQQQLAQ 338
                 3444455555555555555555555555555588888888888888888888877777777765 PP

  == domain 5  score: 7.9 bits;  conditional E-value: 0.002
        YlqD  18 KeelqqqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkqllqql 83 
                 ++++++ql++++++++++l+q++ ++  l++e+++  +q+  e+++++ +e ++++e+++ +++  
  KIR61853.1 318 QRQALTQLHTELDTAQQQLAQIRREGAALENEVNQ-LQQRLVEVRQELTAEANRLEEARNAADSAE 382
                 578899**************************965.678999***************999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3605  (0.201071); expected 358.6 (0.02)
Passed bias filter:                      692  (0.0385967); expected 358.6 (0.02)
Passed Vit filter:                       258  (0.0143901); expected 17.9 (0.001)
Passed Fwd filter:                       149  (0.00831056); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 2.67u 0.40s 00:00:03.07 Elapsed: 00:00:00.68
# Mc/sec: 2063.33
//
Query:       KIR61854.1  [L=296]
Description: hypothetical protein TK50_30795 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.08   12.7   0.2        0.8    9.4   0.0    2.4  3  PYC_OADA  Conserved carboxylase domain


Domain annotation for each model (and alignments):
>> PYC_OADA  Conserved carboxylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   4.4e-05       0.8      39      65 ..      35      61 ..      23      73 .. 0.84
   2 ?   -0.1   0.0     0.036   6.4e+02      16      37 ..     204     225 ..     200     231 .. 0.84
   3 ?   -3.3   0.0      0.35   6.3e+03      23      42 ..     274     293 ..     271     293 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 4.4e-05
                HHTT----STTHHHHHHHHHHHHHHH. CS
    PYC_OADA 39 kllGdivkVTPsSkvvgdlAvfnvlnk 65
                 + G i++VTP+ +++g  A   v+ +
  KIR61854.1 35 HEWGSITEVTPGKQITGSAASKRVTIQ 61
                5789****************9888765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.036
                 HHHHHTT-GGGHHHHHHHHHHH CS
    PYC_OADA  16 eqakeqglldkfeevlkeyaev 37 
                  q ++q ++d +eev + +a+ 
  KIR61854.1 204 LQSQQQRAGDLWEEVNADLARL 225
                 58999**********9998876 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.35
                 -GGGHHHHHHHHHHHHHHTT CS
    PYC_OADA  23 lldkfeevlkeyaevnkllG 42 
                 l+d+  +vl +y+e n+l G
  KIR61854.1 274 LADETTAVLTAYRELNDLYG 293
                 67888999999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2032.88
//
Query:       KIR61855.1  [L=256]
Description: phytanoyl-CoA dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-06   28.7   0.1    2.5e-06   27.9   0.1    1.5  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.1   1.4e-10   2.5e-06      79     209 ..      84     220 ..      10     222 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.4e-10
                 HTSCEEEEEEEEEEEEEEEE-TTTCB-EEEEE-SGGGST.......EES...GCCEEEEEEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTS CS
        PhyH  79 lgqdvyvaavlqsmyqdifkqpkiGgevqpwHqDstflp.......tdp...eesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteae 167
                  ++++y    l+++   ++++ ++ ++   wH    +lp       t +   +++++   + + ++ +e  ++r+  GSH+  ++ l++   + +   +
  KIR61855.1  84 RWEPRYS---LGTFPLRFPHPDEPNDA--GWHIEGSYLPeganwyfT-NlrsQGRALLMLFLFSEVGQEDAPTRIRVGSHLDVPKVLEKYGEDGAS--G 174
                 4555554...44444324444444444..599999999988887752.235589999999**********************77765554444443..2 PP

                 ....CCCTTTGHGSCEEEE.BTTTEEEEEETTSEEEE-TB.SSSXE CS
        PhyH 168 ....ddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksR 209
                      d +  +d ++   ++ ++Gd++l h+ l+H++ +++ +++R
  KIR61855.1 175 ldiaPDLVAASDHRPLALATGSPGDVFLCHPFLVHAAQPHHGTRPR 220
                 6699999***********************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       188  (0.0104858); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1850.06
//
Query:       KIR61856.1  [L=279]
Description: rRNA methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-34  117.1   0.0    9.1e-34  116.7   0.0    1.2  1  SpoU_methylase  SpoU rRNA Methylase family


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.0   5.1e-38   9.1e-34       2     142 .]     117     262 ..     116     262 .. 0.89

  Alignments for each domain:
  == domain 1  score: 116.7 bits;  conditional E-value: 5.1e-38
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHH...HCCCT..EEEEEEST.T-SEGCC CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealke...lkeeg..falvatsl.kgkslse 90 
                     l+vv++++++pgN+G+++R+a+afgas++++++ ++ad+++p+a+ra++g+l+ l++++++  +++l++   l+  g  + +v+t++ +  +  e
      KIR61856.1 117 LTVVFDRPTSPGNIGTLIRSADAFGASGVIVTG-HAADVYDPKAVRASTGSLFALPVVRAPAPQAVLSWvagLRADGigVGVVGTDEhGPLEAAE 210
                     78*****************************99.8889**********************88888877733355665226668888844447779 PP

                     SHHHTTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase  91 idlkekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
                     +d++++++l++GnE++Gls  +++++d+lv+Ipm g ++SLN a A+ ++ly
      KIR61856.1 211 YDFTQPTLLLIGNETTGLSAGWRAACDQLVRIPMTGAASSLNAAAAATVVLY 262
                     9*************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1912.76
//
Query:       KIR61857.1  [L=301]
Description: bile acid:sodium symporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-31  109.7  13.4    2.8e-31  108.7  13.4    1.5  1  SBF        Sodium Bile acid symporter family
    1.2e-14   54.3  21.4    1.6e-14   54.0  21.4    1.1  1  SBF_like   SBF-like CPA transporter family (DUF4137)
    1.1e-05   24.1   6.9    1.1e-05   24.1   6.9    2.0  3  Mem_trans  Membrane transport protein
      0.005   16.8   0.1      0.005   16.8   0.1    3.3  5  DUF1304    Protein of unknown function (DUF1304)
     0.0068   15.4   3.5     0.0068   15.4   3.5    3.2  3  AbrB       Transition state regulatory protein AbrB


Domain annotation for each model (and alignments):
>> SBF  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7  13.4   7.7e-35   2.8e-31       1     189 [.      11     190 ..      11     196 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 7.7e-35
         SBF   1 ailLilmmfpmglkveveklkellkrpkalllglvlqwvikPllmfilakillrdlklepelavGlilvglapggamsnvwtylakGdlelsvvlvals 99 
                 +i+++++m+++gl++++++++++++ pka+++ lv q +i P +  +l +     ++l pelavG++l++++pgg+++ +++ l kGdl+l ++l+a++
  KIR61857.1  11 PIAVGIVMLGLGLTLTLDDFRRVVRYPKAMVVCLVSQMLILPAICLGLVV----AFDLRPELAVGMMLLAASPGGSTASLYSHLFKGDLALNISLTAVN 105
                 58999*********************************************....8999***************************************** PP

         SBF 100 tllailltPlllyllaksl..eqttlkvpieeivksvlivviiPliaGillryillkhkGrewfeskllpavspisligllltivvifalkg 189
                 ++la++++P++++l ++ +   + ++  +++++ ++v+ +v+iP+++G+ +r  +           +l++av+++s++ l+l+i  ++a+ g
  KIR61857.1 106 SVLALFTLPVIVNLSVAGFvgSDSSIGLQFDKV-IQVFALVLIPIAIGMAIRARFTD------AALRLERAVKVLSVVVLILMISSVIAGLG 190
                 **************9999999999********9.899********************......788**************999988877654 PP

>> SBF_like  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0  21.4   4.3e-18   1.6e-14      35     307 ..      12     277 ..       5     283 .. 0.85

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 4.3e-18
    SBF_like  35 ygValiFllsGlslsteellanlrnwrlhllvllisflltplivlalvsllkaaldpelliGllllaalPtTvssnvvmtsqAgGnealalceavignl 133
                 ++V ++ l  Gl+l  +++ + +r  ++ ++ l++ +l+ p+i l+lv++++  l pel++G++llaa P    ++  +    +G+ al +  +++ ++
  KIR61857.1  12 IAVGIVMLGLGLTLTLDDFRRVVRYPKAMVVCLVSQMLILPAICLGLVVAFD--LRPELAVGMMLLAASPGGSTAS-LYSHLFKGDLALNISLTAVNSV 107
                 6799999999*****************************************8..59**************986555.689999**************** PP

    SBF_like 134 lGvfltPalvqlll.....sgssvsvdyaevlkklllsvllPlvvGqvlqkifpklvkrlkkllkkvdslvlllivytsfstafaqgaftsvshiillv 227
                 l+ f  P++v+l +     s ss++ ++++v+ ++ + vl+P+++G+ ++  f + + rl++ ++kv s+v+l+++ +s+     +++f+ +  iil+v
  KIR61857.1 108 LALFTLPVIVNLSVagfvgSDSSIGLQFDKVI-QVFALVLIPIAIGMAIRARFTDAALRLER-AVKVLSVVVLILMISSVIAGLGSEVFDILGEIILAV 204
                 **************888877789999999987.999*******************9888877.556667777778889999999999998888776666 PP

    SBF_like 228 ifnvallLllvvlvillllarllklskedeiavlfcgsaKslalgvpl..isvlfgsnpqlgllllPlllyhliqlvvaavl 307
                 +      + l+ + + ++ +rll++ ++++ia  f      ++l++++    +l  +n   +++++P + y  +  ++aav+
  KIR61857.1 205 VA-----FNLISMGLGYFGPRLLRVGERESIASAFEIGLHNASLAITIgmSPTLL-DN---STMAMPSVTYGFVMFFTAAVF 277
                 55.....3334556789****************9976655555555552055554.43...799*******99999999886 PP

>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   6.9   2.9e-09   1.1e-05     279     386 ..       8     116 ..       2     117 .. 0.90
   2 ?   -2.3   1.0       0.3   1.1e+03      65      80 ..     171     186 ..     134     214 .. 0.53
   3 ?   -3.6   0.1      0.76   2.7e+03     277     290 ..     258     271 ..     238     284 .. 0.53

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 2.9e-09
   Mem_trans 279 ilgdaglpmalfslGlfLalqpkkiacgnsvatfa.lavRlilgPlvmlvavlavgLrgslllvaivqaAlPqgivlfviAkeynvherelstllifgm 376
                 il   +++++++ lGl+L l++ +  ++  +a +  l+  ++++P++ l++v+a++Lr +l  ++ + aA+P g  +     ++  + ++  +l  +  
  KIR61857.1   8 ILFPIAVGIVMLGLGLTLTLDDFRRVVRYPKAMVVcLVSQMLILPAICLGLVVAFDLRPELAVGMMLLAASPGGSTASLYSHLFKGDLALNISLTAVNS 106
                 6666789***************99999988876656999***************************************999999999999999999999 PP

   Mem_trans 377 lialpitlvy 386
                 ++al++++v+
  KIR61857.1 107 VLALFTLPVI 116
                 9999999987 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.3
   Mem_trans  65 ladvlvklivlillll 80 
                  ++++v+li +i++++
  KIR61857.1 171 KVLSVVVLILMISSVI 186
                 2223333333333333 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 0.76
   Mem_trans 277 isilgdaglpmalf 290
                  + + +++ + ++f
  KIR61857.1 258 TMAMPSVTYGFVMF 271
                 33333333333333 PP

>> DUF1304  Protein of unknown function (DUF1304)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.61   2.2e+03      52      81 ..      19      50 ..      12      79 .. 0.60
   2 ?   -1.4   0.9      0.62   2.2e+03      75      92 ..      69      86 ..      42     117 .. 0.68
   3 ?    0.1   0.6      0.22   7.7e+02      65      90 ..     102     127 ..      61     150 .. 0.58
   4 ?   -1.3   0.2      0.58   2.1e+03      69      84 ..     174     189 ..     148     211 .. 0.62
   5 !   16.8   0.1   1.4e-06     0.005      40      93 ..     231     286 ..     223     295 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.61
     DUF1304 52 LAagliwgl..llgseavglalvlfflgcvvv 81
                L++gl + l  + +  ++ +a+v+++++ +++
  KIR61857.1 19 LGLGLTLTLddFRRVVRYPKAMVVCLVSQMLI 50
                55555555553335555556666666665544 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.62
     DUF1304 75 flgcvvvaglygaltask 92
                 +g++++a+  g+ tas 
  KIR61857.1 69 AVGMMLLAASPGGSTASL 86
                456777777777777755 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.22
     DUF1304  65 eavglalvlfflgcvvvaglygalta 90 
                 +av++ l+lf+l ++v  +++g++ +
  KIR61857.1 102 TAVNSVLALFTLPVIVNLSVAGFVGS 127
                 33444455555555555555555554 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.58
     DUF1304  69 lalvlfflgcvvvagl 84 
                 + +vl+++++ v+agl
  KIR61857.1 174 SVVVLILMISSVIAGL 189
                 3344555555555554 PP

  == domain 5  score: 16.8 bits;  conditional E-value: 1.4e-06
     DUF1304  40 vlaanqGlYNgfLAagliwgl.llgseavglalvlfflgcvvvaglygaltask.k 93 
                 + a+  Gl N  LA+ + ++  ll ++++++  v+++ ++ + a+++g++ +++ +
  KIR61857.1 231 ASAFEIGLHNASLAITIGMSPtLLDNSTMAMPSVTYGFVMFFTAAVFGVVVSRRvR 286
                 67999****************7789999*********************9987744 PP

>> AbrB  Transition state regulatory protein AbrB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   3.5   1.9e-06    0.0068     207     276 ..      11      84 ..       7      96 .. 0.79
   2 !    4.9   7.2     0.003        11     175     260 ..     109     196 ..      89     214 .. 0.66
   3 ?    2.2   1.1     0.019        69      34      92 ..     241     298 ..     222     298 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.9e-06
        AbrB 207 alaqlliGasiGlrftreslrellralpaalls....tlllialcallalllalltgidlltalLAtaPGGlae 276
                  +a  ++ + +Gl +t + +r+++r+  a++++    +l+l a+c++l +++ l  ++ +  +lLA +PGG ++
  KIR61857.1  11 PIAVGIVMLGLGLTLTLDDFRRVVRYPKAMVVClvsqMLILPAICLGLVVAFDLRPELAVGMMLLAASPGGSTA 84 
                 56666777778888888888888877666665511125677799***************************875 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.003
        AbrB 175 rlPaaallgplllsaalqlaglltialPalllalaqlliGasiGlrftreslrellra..lpaallstlllialcallalllalltgi 260
                  l +  +++ l +++++ +   + +++++++  +a++li ++iG+ ++ ++ + +lr   ++ +l +++l+++++ ++a l +++++i
  KIR61857.1 109 ALFTLPVIVNLSVAGFVGSDSSIGLQFDKVIQVFALVLIPIAIGMAIRARFTDAALRLerAVKVLSVVVLILMISSVIAGLGSEVFDI 196
                 4555555556666666655555567779999999999988888887777777776665214445555555555666666666666555 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.019
        AbrB  34 lGvliGssftpevlaqiaeewllllllvvltlllsllvglllarlsgldratallgslP 92 
                   ++i   ++p +l++ +  ++++    v+ + ++++ g++++r  +   at+ ++++P
  KIR61857.1 241 ASLAITIGMSPTLLDNSTMAMPSVTYGFVMFFTAAVF-GVVVSRRVRAGTATGDFSAAP 298
                 5555666677888888776666666666665555555.455555566666777676666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 1928.37
//
Query:       KIR61858.1  [L=396]
Description: hypothetical protein TK50_30845 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-32  112.3  14.4    3.2e-32  112.3  14.4    1.8  2  Glyco_hydro_12  Glycosyl hydrolase family 12
    7.5e-30  103.2  14.0    7.5e-30  103.2  14.0    3.6  4  CBM_2           Cellulose binding domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_12  Glycosyl hydrolase family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.7      0.21   1.9e+03       9      57 ..      80     126 ..      72     135 .. 0.70
   2 !  112.3  14.4   3.5e-36   3.2e-32       2     214 .]     182     396 .]     181     396 .] 0.89

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.21
                     -TTEEEEEEEEEEEE-SSEEEEEEEEEEEEESSGB--EEEEE-BGGGTB CS
  Glyco_hydro_12   9 lWgskegsgsvavkvdgekitssgasahtswkekgypevygGeksvksy 57 
                      W+++ +++   v+++  +++ +ga+a       g+   + G ++v ++
      KIR61858.1  80 AWNATVTQSGAQVTAT--NVAYNGAIATNGTVGFGFTGSWSGANPVPTN 126
                     5888777766666665..8888888776655556888888888887665 PP

  == domain 2  score: 112.3 bits;  conditional E-value: 3.5e-36
                     EEEEEE--TTEEEEEEEEEEEE-SSEEEEEEEEEEEEESSG.......B--EEEEE-BGGGTB--TT----EEGGGEEEEEEEEEEEEE.-TT-- CS
  Glyco_hydro_12   2 pysvennlWgskegsgsvavkvdgekitssgasahtswkek.......gypevygGeksvksysnsgvalpvkvssvssiptevsfsid.dtnvk 88 
                     +y + nn Wg+  gsgs+++ + g   + +  s+ ts +++       ++     G +       +++ lpv++s  + + t+ +f ++ +++v+
      KIR61858.1 182 KYWIPNNQWGAGTGSGSQCIWTSG--GSGDRISWGTSYNWSgqagtvkSFAAAILGWH--WGWRRQNTGLPVQLSANRNVNTSWQFTVTqNGTVN 272
                     68899**************99985..46677788888888877776667777788888..456777888******************9989**** PP

                     EEEEEEEEEESSTT-S.--TT-EEEEEEEE.EES---SSEEEEEEEETTEEEEEEE.EESSSEEEEEEESS--EEEEEEHHHHHHHHH-SS---G CS
  Glyco_hydro_12  89 anvaydlflaaeknqv.tsigdvElmiWlarygniqPiGekietavvgGetWelwlGaeaeqdvlsFvakspikgysfDvkdFldaltsarglda 182
                      nvayd +l + +n   +     ElmiWl+r  n  P G++++t+++ G tWe+w G+ + ++v+s+v +s++++   +++dF +   +arg   
      KIR61858.1 273 QNVAYDCWLHPIANPGsADQPSDELMIWLYR-SNASPAGSRQGTVTIAGTTWEIWRGYVGTWNVYSYVRTSNTTNANLNIRDFTND-LVARGWMS 365
                     **********9999865777778*******6.6679*************************************************9.69****** PP

                     GGSEE-EEEEE--B..--TT-EEEEEEEEEEE CS
  Glyco_hydro_12 183 edlylislqiGtEpftgspetlkvenfsasve 214
                     +++yl+s+q+G E ftg ++  +   +s++++
      KIR61858.1 366 SSKYLTSVQAGPEIFTGNGQ-VTTSTYSVTIN 396
                     ******************99.89999999887 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2  14.0   8.4e-34   7.5e-30       1     101 []      35     134 ..      35     134 .. 0.98
   2 ?   -2.9   2.6      0.98   8.8e+03       8      39 ..     187     220 ..     182     233 .. 0.49
   3 ?    2.5   3.4      0.02   1.8e+02      36      64 ..     249     275 ..     228     292 .. 0.76
   4 ?   -2.3   0.6      0.61   5.5e+03      34      34 ..     349     349 ..     305     394 .. 0.58

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 8.4e-34
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTE CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGa 99 
                 ++++yav s+W++Gf+a vtv+N g++  ++W+++wt+ agq+ tq+Wnatv+qsG +vtatnv +Ng ia+ g++ fGf+gs++g n+ pt+f+vnG 
  KIR61858.1  35 CAVRYAVSSQWSGGFNADVTVTNLGDPL-TSWRLTWTYAAGQQATQAWNATVTQSGAQVTATNVAYNGAIATNGTVGFGFTGSWSGANPVPTNFAVNGV 132
                 889**********************976.68******************************************************************** PP

                 E- CS
       CBM_2 100 aC 101
                 +C
  KIR61858.1 133 TC 134
                 *9 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.98
                 EEE-SSEEEE..EEEEEE-SSS-EES-EEEEE-- CS
       CBM_2   8 tseWetGfta..svtvkNsgssaingWtvewtlp 39 
                 +++W++G  +  +   +  gs    +W  +++++
  KIR61858.1 187 NNQWGAGTGSgsQCIWTSGGSGDRISWGTSYNWS 220
                 5677666543102222333333444555555544 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.02
                 EE--TTEEEEEEESEEEEEETTEEEEEE- CS
       CBM_2  36 wtlpagqrvtqlWnatvsqsGnsvtatnv 64 
                  +l+a+++v  +W+ tv+q+G+    +nv
  KIR61858.1 249 VQLSANRNVNTSWQFTVTQNGTVN--QNV 275
                 5789999*************9743..333 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 0.61
                 E CS
       CBM_2  34 v 34 
                 +
  KIR61858.1 349 L 349
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       858  (0.0478554); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2706.34
//
Query:       KIR61859.1  [L=260]
Description: hypothetical protein TK50_30855 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-50  172.1   0.1    1.9e-50  171.9   0.1    1.0  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.9   0.1     1e-54   1.9e-50       3     236 ..       8     234 ..       6     252 .. 0.93

  Alignments for each domain:
  == domain 1  score: 171.9 bits;  conditional E-value: 1e-54
                 HHHHHHHHHHHHHHHHHHHHHTTTSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCCCT.SSSSSEEEEEEEEETHHHHHH CS
  Inositol_P   3 eevtkaavelaakagevlreefsenelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakgekseltedgltwivDPiDGTknFvr 101
                 +   ++a e+a+  g  l ++f+ +   +++k+   ++dlv++ad+a+e++i+e l++++p++ il ee+ ++       ++gl w++DP+DGT+n+v+
  KIR61859.1   8 DDCRRVAEEAARLGGRELLRRFG-DHGRVDHKT--ASTDLVSEADRASEAHIVELLRARRPDDGILAEEGSGHTG-----SSGLRWVLDPLDGTVNYVS 98 
                 56678899**************9.999999999..89********************************999999.....788**************** PP

                 T-SG-EEEEEEEE....TTEEEEEEEEETTTTEEECEETTTEEEETCEEEEECTTSEGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCHEEEBESSH CS
  Inositol_P 102 gipqvaVsigllv....egkpvlGviaqPllgqlysaakgkGaflngeklplsrappiseallvtlfavssrkdtseasllekvesavsaegvrsvgss 196
                 g p ++Vs++  +      +pv+Gv+ +P++++l++a++g+Gaf ++ +l    +  ++e +l+t  a++  +++ +a++ + + + v+    r++gs+
  KIR61859.1  99 GMPFWCVSVACEEetpdGWRPVVGVVLDPVHDELFHAVRGRGAFRDDVPLARPAGAALDEVILATGYAYDVAHRRVQAAVVADLAGDVRGV--RMLGST 195
                 ************97764559***************************7776666669********************99999999999988..****** PP

                 HHHHHHHHHTSTSEEEEEC.EBHHHHHHHHHHHHHTTEEE CS
  Inositol_P 197 alklaavaeGkadaylefgrekkWDhAAGeaileeaGGvv 236
                 al+la++a+G++day+e +  + WD AAG +i  eaG+ v
  KIR61859.1 196 ALALAWIAAGRCDAYVEDR-AFRWDWAAGLVIAVEAGAAV 234
                 *******************.*****************877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1881.10
//
Query:       KIR61860.1  [L=394]
Description: acyl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-27   95.9   1.5    4.3e-27   95.0   1.5    1.4  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
    8.4e-08   32.9   0.1    8.4e-08   32.9   0.1    1.7  2  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    1.6e-05   25.1   0.7    2.8e-05   24.4   0.7    1.3  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
      0.005   17.0   0.0      0.013   15.7   0.0    1.7  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   1.5   9.6e-31   4.3e-27       5     133 ..     243     372 ..     239     373 .. 0.96

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 9.6e-31
                    HHHHHHHHHHHHHHHHHHHHHHC.TTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   5 avalGaAraalaefvelarervr.assgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaavd 99 
                     +a+G+A++a +ef ++  +r+  +++ e+++++p+t+l++++a +++++A+ + ++aa+ +  +aa+g+e t e+ra+ r++  +a++la +avd
     KIR61860.1 243 GAAVGVAKSARDEFFDRLPGRKItYTEYENQSEAPVTHLKVGTALMKIEQAEFHAYHAADLVDTKAATGAEWTLEERARVRADHGWATRLAKEAVD 338
                    589***************9887758889******************************************************************** PP

                    HHHHHCGGGGGBTT-HHHHHHHHHHHHCTSGGG- CS
  Acyl-CoA_dh_2 100 alfeaaGgsalrkesplqRlwRDahaaaaHaaln 133
                       +a+Gg++++ + p+qR+ RD++a++ H ++n
     KIR61860.1 339 IFASASGGTSIYRDVPIQRIVRDVNAMSLHGLIN 372
                    ******************************8877 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.1   1.9e-11   8.4e-08      22      84 ..      26      89 ..       7     115 .. 0.81
   2 ?   -3.2   0.3         3   1.3e+04      11      33 ..     300     323 ..     291     336 .. 0.50

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.9e-11
                   HHHHHHHHT.SGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHH CS
  Acyl-CoA_dh_N 22 haaewdeeg.efprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgv 84
                   ++a w+ee+ +  +e++ ++ e+Gl+ +  p  ygG ++d+ + + va el+r+da++a + +v
     KIR61860.1 26 KHAAWQEENrRLHDETVAAIEEAGLFKLRTPRRYGGYEVDTRTLVAVATELGRGDASTAWVTSV 89
                   3566665555889999*****************************************9886665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3
                    HHHHHHHHTHHHHHHHH.HHT.SGH CS
  Acyl-CoA_dh_N  11 vrefaeeelaphaaewd.eeg.efp 33 
                    +++++++++a   aew  ee+ ++ 
     KIR61860.1 300 AADLVDTKAAT-GAEWTlEERaRVR 323
                    45566666653.5666532221333 PP

>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.7   6.2e-09   2.8e-05      20     132 ..     243     366 ..     232     369 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 6.2e-09
                    ..-SHHHHHHHHHHHHHHHTSB-CC...-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------........HHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_1  20 aaalglarraleealeyarrrkafg...kplidhqlvreklaemaaeleaarllvyraaealdagkpd........raeasmaKlfaselaqevad 104
                     aa+g+a++a +e  +++  rk      +   + ++ + k+++   ++e+a  ++y+aa ++d+++ +        ra++ +   +a++la e++d
     KIR61860.1 243 GAAVGVAKSARDEFFDRLPGRKITYteyENQSEAPVTHLKVGTALMKIEQAEFHAYHAADLVDTKAATgaewtleeRARVRADHGWATRLAKEAVD 338
                    46788888888888888888854331124568999*********************************99999999999999999*********** PP

                    HHHHHHGGGTTSGGGHHHHHHHHTHHHH CS
  Acyl-CoA_dh_1 105 lamqllGgaGyleeypverlyrdarvlr 132
                      +   Gg ++ ++ p++r++rd+ +++
     KIR61860.1 339 IFASASGGTSIYRDVPIQRIVRDVNAMS 366
                    ************************9987 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     3e-06     0.013      18      67 ..     124     172 ..     118     199 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3e-06
                    -EEEEETT.EEEEEEEEEEEETTTT-SEE...EEEEETS-------EEEEEEE CS
  Acyl-CoA_dh_M  18 ttaaerdggeyvlnGeKiwitnaaiatla...lvlartekpdrarglslflvp 67 
                     ta+++dg ++v+nG+ ++i++a++a++    +v++r  +++  + + ++lvp
     KIR61860.1 124 GTAVPTDG-GFVVNGSWHFISGAHHAQWQeiaVVVVR-PDAE-PEPI-MALVP 172
                    45777777.8***************888765577777.3333.4555.88888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2778.43
//
Query:       KIR61861.1  [L=287]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-46  159.0   6.3    1.1e-46  159.0   6.3    1.8  2  MLTR_LBD  MmyB-like transcription regulator ligand binding do
    1.1e-16   60.9  11.7    1.2e-16   60.8   9.5    2.3  2  HTH_31    Helix-turn-helix domain
    6.2e-09   35.8   0.0    9.9e-09   35.1   0.0    1.3  1  HTH_3     Helix-turn-helix
    6.7e-05   23.3   0.0    0.00011   22.5   0.0    1.3  1  HTH_26    Cro/C1-type HTH DNA-binding domain
     0.0039   17.2   0.0     0.0068   16.4   0.0    1.3  1  HTH_19    Helix-turn-helix domain
     0.0089   15.9   0.3      0.018   14.9   0.3    1.5  1  HTH_25    Helix-turn-helix domain
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.23   11.4   0.0    1.5  1  HTH_37    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> MLTR_LBD  MmyB-like transcription regulator ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.42   1.1e+03      89     162 ..      64      95 ..      32     100 .. 0.55
   2 !  159.0   6.3   4.2e-50   1.1e-46       2     168 .]     104     266 ..     103     266 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.42
    MLTR_LBD  89 palaalvaeLsaaspefarlwarhdvaarrsgrkrlrhpevgeltldsetlgtpddptlelvvytaePgdeste 162
                 + l+a+ +                                         +l++ +d+ ++l  + a+Pg ++t 
  KIR61861.1  64 EVLDAVAR-----------------------------------------ALQLDGDERAHL-FVLARPGRATTG 95 
                 33333333.........................................455555555433.345555555555 PP

  == domain 2  score: 159.0 bits;  conditional E-value: 4.2e-50
    MLTR_LBD   2 rpalrrlLdalepvPAlVldrrwdvlaaNraaraLlgdpaalpeperNllrlvfldpglrpliedweevaralvarLraeaarrpddpalaalvaeLsa 100
                 +pal+++L+ + +vPA+Vl++  dv a+N++++aLl+     + + +N+ r vfldp++r+l++dw   ar++va Lr +++r+ +d+++  lv+eL +
  KIR61861.1 104 PPALHQMLAMMPDVPAMVLGAATDVHAWNPLGHALLAW---HLDEAPNMSRSVFLDPRMRELYADWPGKARSVVAYLRMAVGRYRGDRRVVGLVEELLS 199
                 79************************************...699******************************************************* PP

    MLTR_LBD 101 aspefarlwarhdvaarrsgrkrlrhpevgeltldsetlgtpddptlelvvytaePgdesteaalrlL 168
                 +spefa +wa+h+v+++++ +  + hp+vg lt++ +tl+++d+p+l lv++t+e+g++s++a lr L
  KIR61861.1 200 RSPEFAGMWAEHPVSTCETMTYDMAHPVVGALTVNQHTLRLEDTPDLMLVTFTVEAGSPSAAA-LRML 266
                 ***************************************************************.9976 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   9.5   4.7e-20   1.2e-16       2      64 .]       4      83 ..       3      83 .. 0.93
   2 ?   -3.8   0.0         7   1.8e+04      44      60 ..      91     107 ..      88     110 .. 0.56

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 4.7e-20
      HTH_31  2 LGalLralRera.................GLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerael 64
                LG++Lr +R                    GL++ee+A+++gvs+s+++rlEqG+  ++s +vl+a+aral+ld++era+l
  KIR61861.1  4 LGEFLRSRRGVIrpqdagltrygerrrvsGLRREELAQLAGVSVSYYTRLEQGQAHNVSDEVLDAVARALQLDGDERAHL 83
                89999999984455899999999999999**************************************************8 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 7
      HTH_31  44 pavlealaralgldpae 60 
                 +a+  ++ar + ++pa+
  KIR61861.1  91 RATTGRAARSHTTPPAL 107
                 55555666666566554 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   3.9e-12   9.9e-09       8      54 ..      32      79 ..      27      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 3.9e-12
                TTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHHH CS
       HTH_3  8 lglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvslde 54
                 gl +eeLA+++Gvs+s+++r+E G   n s e+l ++a+aL+++ de
  KIR61861.1 32 SGLRREELAQLAGVSVSYYTRLEQGqAHNVSDEVLDAVARALQLDGDE 79
                5999**********************9***************998776 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.5e-08   0.00011      11      53 ..      34      76 ..      30      79 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.5e-08
      HTH_26 11 itkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgct 53
                + + eLa+ +g+s +  +rl +g++++vs ++Ld++++aL+ +
  KIR61861.1 34 LRREELAQLAGVSVSYYTRLEQGQAHNVSDEVLDAVARALQLD 76
                5678************************************975 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.7e-06    0.0068      12      57 ..      33      78 ..      29      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.7e-06
      HTH_19 12 gltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidle 57
                gl  eela+ +g+s s+++ +E g+ ++ s e+l ++a+al +d +
  KIR61861.1 33 GLRREELAQLAGVSVSYYTRLEQGQAHNVSDEVLDAVARALQLDGD 78
                67789******************************99999988765 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3   6.9e-06     0.018       4      61 ..      27      79 ..      26      80 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.9e-06
                HHHHTTT--HHHHHHHSS--HHHHHHHHCT--TTSS-HHHHHHHHHHHHHHTT--HHH CS
      HTH_25  4 aaRearglsleevaketkIrkdylealEeddfdalpepvylrgylrnYArlLgldpee 61
                ++R+  gl +ee+a+   ++++y  +lE+++  +  ++v     l + Ar+L+ld++e
  KIR61861.1 27 ERRRVSGLRREELAQLAGVSVSYYTRLEQGQAHNVSDEV-----LDAVARALQLDGDE 79
                578899******************************997.....9**********986 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     9e-05      0.23      27      71 ..      29      73 ..      26      76 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9e-05
                HHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHT CS
      HTH_37 27 iekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltal 71
                ++  +l+ +e+aql g++ +  +rl++g+  ++s + L+ ++ al
  KIR61861.1 29 RRVSGLRREELAQLAGVSVSYYTRLEQGQAHNVSDEVLDAVARAL 73
                567899****************************99999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2209.83
//
Query:       KIR61862.1  [L=294]
Description: hypothetical protein TK50_30875 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-15   55.3   0.2    1.1e-14   54.7   0.2    1.5  1  Abhydrolase_1  alpha/beta hydrolase fold
    6.4e-13   49.8  10.6    7.4e-13   49.6  10.6    1.0  1  Abhydrolase_6  Alpha/beta hydrolase family
    1.4e-06   27.8   0.0    2.6e-06   26.9   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.2   1.8e-18   1.1e-14       4     114 ..      25     130 ..      22     273 .. 0.88

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1.8e-18
                    EEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEE.EEEETHHHHHHHHHHHHHGGGE CS
  Abhydrolase_1   4 vilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddklt.lvGhSmGGmialayaaeyperV 98 
                    +++hG+p + ++++   l+p L ++g++v+++  rG++ Ss +p     + ++ ++ +d++++ + lg d+ + l+Gh++G ++++a+a ++per 
     KIR61862.1  25 LLVHGFPFTPNSFRY--LVPVLVDAGYRVVTPWTRGFAPSSVPPP---GREHIRDMVADVNALHEVLGGDERAvLIGHDFGAAVSWAAAVQAPERW 115
                    79*************..***************************9...899************99999999999********************** PP

                    EEEEEESECSSCCHHH CS
  Abhydrolase_1  99 kalvllgaidpaasli 114
                    ++lv+++  +p+  ++
     KIR61862.1 116 SRLVACDV-PPFQFFG 130
                    ******99.4444444 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6  10.6   1.2e-16   7.4e-13       2     217 ..      25     282 ..      24     285 .. 0.61

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 1.2e-16
                    EEE--GC.....G.C.HHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHHHHHHCCTT.....TTSEEEEEETCHHHHHHHHHHCC...... CS
  Abhydrolase_6   2 lllHGagssassW.l.vapLaallaagvhvlapDlpGhGrsdpppldledladlaalldelaa...gggpvvlvGHSlGGalalaaapla...... 86 
                    ll+HG+++++ s+ + v     l  ag++v++p  +G+ +s+ pp + e ++d +a +++l +   g+ ++vl+GH++G+a+++aaa +a      
     KIR61862.1  25 LLVHGFPFTPNSFrYlV---PVLVDAGYRVVTPWTRGFAPSSVPPPGREHIRDMVADVNALHEvlgGDERAVLIGHDFGAAVSWAAAVQAperwsr 117
                    8******9988885423...4455666777777789**755555555555666655555554455478888**************99999888544 PP

                    ..EEEEES-.........----TTT.S----TTHHHHHH.......TT-CCCCHCCH...............S-HSCCCCHHH....CCCCHCHCC CS
  Abhydrolase_6  87 lvvgvlldppp.......talpagl.laaalelllalla.......llrllawlsre...............plprlfladed....adaawrarl 148
                    l   v+ d pp       + +p g  ++a +++++ + a           la+l  +               ++ r  l++++    a   +r+++
     KIR61862.1 118 L---VACDVPPfqffgeyLLDPRGInVQAHFWFFQMAAAdelvaanD---LAFLEFMlhkysrdgydvtqdlADIRAALGKPEnlhaALGMYRTNF 207
                    1...6666666666555534444445555555555444433333221...22221112223334554444553333333344446545999***** PP

                    CGHHHHCCHHCHTTCCHHTT-TTGC..EEECTT-C...HHHHCHHCCCH.STTEEETCE...SSS-HHHHSHHHH CS
  Abhydrolase_6 149 arlaallaglgllpaaawadlpvpl..lvlggeDp...lvprllerlla.qagarlpvvlpgaGHlphleepdev 217
                     ++   ++ +g+   a w +lp++    ++g +D    +  + l+r+   +++   + ++p++ H+p+ e+p+ +
     KIR61862.1 208 PPATFGTPEWGAEQGALWGALPTQPtlNIFGVQDVafaMNEEKLARIVEaLPKGSAGALVPDSRHVPLTEQPEIT 282
                    9999*******888888888888884435588888554222333333333333333489**********999866 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   4.3e-10   2.6e-06       8     107 ..      25     121 ..      22     128 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 4.3e-10
  Hydrolase_4   8 vlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvagli 105
                  +lvHG+  + + +  l+  L+++G+ v++   rG+  s       +++ d+v+D++a+ e +    ++++ +l+Gh  G++++ +++ + p+++++l+
   KIR61862.1  25 LLVHGFPFTPNSFRYLVPVLVDAGYRVVTPWTRGFAPSSVPPPGREHIRDMVADVNALHEVLG---GDERAVLIGHDFGAAVSWAAAVQAPERWSRLV 119
                  79*************************************555558899**********88777...777889***********************999 PP

  Hydrolase_4 106 ls 107
                   +
   KIR61862.1 120 AC 121
                  65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2219.20
//
Query:       KIR61863.1  [L=112]
Description: transcription initiation protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-21   77.1   0.0    1.3e-21   76.7   0.0    1.0  1  YCII      YCII-related domain


Domain annotation for each model (and alignments):
>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.0   7.5e-26   1.3e-21       1      92 [.       1     110 [.       1     111 [. 0.98

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 7.5e-26
                 EEEEEEEEE-TTGH..HHHHHHHHHHHHHHHHHHHTTGEEEE................EEEECSCSSSSCGGCEEEEEEEEEESSHHHHHHHHHT-HHH CS
        YCII   1 Mlyvilaydkpasl..eeraallaahlayleelkkeGvllaa................GpklvidGpfaetkeqlgGfyiveaadldeaieiaardPfv 81 
                 M y++++y+++a +   ++ +  + h a+l+e ++ G +  +                G++lv dGpf e++eq+gGf+++++adldea e+aa +Pf+
  KIR61863.1   1 MEYALVIYHDEAGElsPAEIDDHPRHRAWLDEVRRRGAFAGGqrlrpgragrtvrsraGATLVSDGPFVEAREQVGGFVLLRCADLDEATELAALHPFA 99 
                 99***********9998888999****************999********************************************************* PP

                 HTTEEEEEEEE CS
        YCII  82 eaGlveerevk 92 
                 e G++e+r+v+
  KIR61863.1 100 ELGAIEVRPVW 110
                 **********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       196  (0.010932); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 849.06
//
Query:       KIR61864.1  [L=419]
Description: ECF subfamily RNA polymerase sigma-24 subunit [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-14   52.9   0.9    7.8e-14   51.2   0.9    1.9  1  Sigma70_r2    Sigma-70 region 2
    1.4e-06   27.8   0.4    5.3e-06   26.0   0.0    2.2  2  Sigma70_r4_2  Sigma-70, region 4
  ------ inclusion threshold ------
       0.12   12.6   2.4        1.6    9.0   0.5    3.4  3  TPR_2         Tetratricopeptide repeat
       0.78    9.4   3.8        4.9    6.8   0.5    2.5  2  TPR_21        Tetratricopeptide repeat-like domain
        4.3    8.4  37.2        2.9    9.0   2.7    6.1  6  TPR_14        Tetratricopeptide repeat
        9.8    6.5   7.7        2.5    8.4   0.9    3.5  4  TPR_7         Tetratricopeptide repeat
        9.9    6.4   9.9       0.41   10.9   1.7    2.9  3  DnaB_bind     DnaB-helicase binding domain of primase


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.9     3e-17   7.8e-14       2      69 ..      13      78 ..      12      79 .. 0.95

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 3e-17
                HHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSS CS
  Sigma70_r2  2 verylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrr 69
                ++r ++++++ +  l+g++a aeD+vQ+af ++ ++++    +  ++++awl+++arn+a drlR ++
  KIR61864.1 13 FRREYRQLVGTLVALTGDRALAEDCVQDAFAAAVQRWR--GEGVPRRPGAWLTTVARNRAVDRLRHES 78
                6899**********************************..789999*******************875 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   2.1e-09   5.3e-06       3      52 ..     112     161 ..     110     161 .. 0.94
   2 ?   -3.5   0.1       3.5     9e+03       3      14 ..     216     227 ..     215     228 .. 0.74

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.1e-09
                   HHHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHH CS
  Sigma70_r4_2   3 alrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArk 52 
                    + ++  +L+   + +++lr + g+  +EIA+ l +++gt  +rl RAr+
    KIR61864.1 112 IFTCCHPALSLTSQVALTLRTVVGFGPAEIARALLVTPGTLAQRLVRARR 161
                   67789999****************************************96 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.5
                   HHHHHHTTS-HH CS
  Sigma70_r4_2   3 alrealaeLper 14 
                   +l ++la+L ++
    KIR61864.1 216 RLARLLARLLPD 227
                   577889998876 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.2   8.1e+03      19      33 ..     213     227 ..     204     228 .. 0.67
   2 ?    0.8   0.0      0.26   6.7e+02      14      29 ..     268     283 ..     265     285 .. 0.87
   3 ?    9.0   0.5   0.00064       1.6       7      33 ..     370     396 ..     369     397 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.2
       TPR_2  19 eAleafekAleldPn 33 
                 eA+++ +   +l P+
  KIR61864.1 213 EAVRLARLLARLLPD 227
                 666666666666665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.26
       TPR_2  14 lgdyeeAleafekAle 29 
                 +g+ +e ++++e+Al+
  KIR61864.1 268 RGRIAEGVDLLERALR 283
                 7999999*******98 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00064
       TPR_2   7 lGlayyklgdyeeAleafekAleldPn 33 
                 +++++++l++ ++A+ a+++Al l+ n
  KIR61864.1 370 RADLLRRLDRRADAAGAYRRALGLAGN 396
                 7999******************77765 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.023        59     135     176 ..       4      45 ..       2      54 .. 0.88
   2 ?    6.8   0.5    0.0019       4.9     146     189 ..     364     408 ..     290     412 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.023
      TPR_21 135 tLeakkeeafaalvaelrGDilvaqgkldeAraaYqaAlaal 176
                 t++a+ ++af+ ++ +l G +++ +g+++ A +  q+A+aa 
  KIR61864.1   4 TVDAAVAAAFRREYRQLVGTLVALTGDRALAEDCVQDAFAAA 45 
                 6788999************************99999988775 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0019
      TPR_21 146 alvaelrGDilvaqgkldeAraaYqaAlaaleeka.rellqlKld 189
                  lv  +r D+l + +++++A  aY++Al   +++  r++l+ +l 
  KIR61864.1 364 HLVPAVRADLLRRLDRRADAAGAYRRALGLAGNDVeRRYLRDRLA 408
                 45677999********************98887777777776665 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.5      0.68   1.7e+03       3      33 ..      16      47 ..      14      52 .. 0.78
   2 ?   -3.1   0.1         7   1.8e+04      14      21 ..      81      88 ..      72      98 .. 0.57
   3 ?    9.0   2.7    0.0011       2.9       8      42 ..     202     236 ..     195     238 .. 0.86
   4 ?    8.3   0.2    0.0018       4.7      12      39 ..     266     294 ..     263     299 .. 0.78
   5 ?    3.7   0.3     0.053   1.4e+02       4      32 ..     311     340 ..     308     352 .. 0.82
   6 ?    7.7   4.3    0.0029       7.4       7      36 ..     370     399 ..     368     410 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.68
      TPR_14  3 allalaeallal.GdpdeAiallrralalaPd 33
                 +++l+  l al Gd + A+++ ++a a+a +
  KIR61864.1 16 EYRQLVGTLVALtGDRALAEDCVQDAFAAAVQ 47
                57788888877559999999999999988765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 7
      TPR_14 14 lGdpdeAi 21
                + +++eA+
  KIR61864.1 81 AARLREAA 88
                33444443 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0011
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawllla 42 
                 ++ ll++G  +eA++l+r + +l Pdd+e++ lla
  KIR61864.1 202 GADLLRRGLCAEAVRLARLLARLLPDDPETLGLLA 236
                 44589**************************9998 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0018
      TPR_14  12 lalGdpdeAiallrralala.Pddaeawl 39 
                 + +G+ +e ++ll+ral+++ P++ +++ 
  KIR61864.1 266 WDRGRIAEGVDLLERALRHGrPGPYQVQA 294
                 889***************95466655555 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.053
      TPR_14   4 llalaeallalGdpd.eAiallrralalaP 32 
                 ++++a ++++l ++   A+ ll+ra+a a 
  KIR61864.1 311 WAQIAGLYAELAELTpSAVVLLNRAVAVAM 340
                 999999**999998747999*****99765 PP

  == domain 6  score: 7.7 bits;  conditional E-value: 0.0029
      TPR_14   7 laeallalGdpdeAiallrralalaPddae 36 
                 +a++l++l++ ++A+ ++rral la +d e
  KIR61864.1 370 RADLLRRLDRRADAAGAYRRALGLAGNDVE 399
                 7999*******************9999876 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2       2.6   6.6e+03      18      34 ..      81      95 ..      80      97 .. 0.73
   2 ?   -3.2   0.0       4.9   1.2e+04      20      29 ..     276     283 ..     275     290 .. 0.64
   3 ?   -0.7   0.0      0.75   1.9e+03      14      29 ..     310     325 ..     296     328 .. 0.83
   4 ?    8.4   0.9   0.00096       2.5       6      29 ..     371     394 ..     370     404 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.6
       TPR_7 18 AielyeqsLaltkdped 34
                A++l e+  a+t + +d
  KIR61864.1 81 AARLREA--AVTLSAYD 95
                8889999..88876665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.9
       TPR_7  20 elyeqsLalt 29 
                 +l+e+  al+
  KIR61864.1 276 DLLER--ALR 283
                 78999..554 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.75
       TPR_7  14 dyeeAielyeqsLalt 29 
                 d+++ ++ly ++ +lt
  KIR61864.1 310 DWAQIAGLYAELAELT 325
                 8999999999977877 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.00096
       TPR_7   6 arlysrlGdyeeAielyeqsLalt 29 
                 a+l +rl ++++A++ y+++L+l+
  KIR61864.1 371 ADLLRRLDRRADAAGAYRRALGLA 394
                 8999***************98876 PP

>> DnaB_bind  DnaB-helicase binding domain of primase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.68   1.7e+03      19      28 ..     180     189 ..     178     192 .. 0.87
   2 ?   -3.4   0.2       4.6   1.2e+04      21      26 ..     218     223 ..     212     227 .. 0.47
   3 ?   10.9   1.7   0.00016      0.41      15      54 ..     375     414 ..     369     416 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.68
                 HHHHHHHHHH CS
   DnaB_bind  19 gkaravreal 28 
                 g+a+avr++l
  KIR61864.1 180 GRAAAVRAVL 189
                 9******997 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.6
                 HHHHHH CS
   DnaB_bind  21 aravre 26 
                 ar++++
  KIR61864.1 218 ARLLAR 223
                 223333 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00016
                 TSHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHT-- CS
   DnaB_bind  15 stpegkaravrealpllaripdpieRdlYirrlAerlgid 54 
                 ++ + +a a+ + ++ l    +++eR+++ +rlAe +g +
  KIR61864.1 375 RRLDRRADAAGAYRRALGLAGNDVERRYLRDRLAEVTGTS 414
                 677899999999999999999*****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2973.35
//
Query:       KIR61865.1  [L=266]
Description: hypothetical protein TK50_30890 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.4e-33  113.9   4.1    2.2e-31  109.2   4.1    2.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    4.8e-27   94.7   0.0    6.5e-27   94.3   0.0    1.1  1  adh_short     short chain dehydrogenase
     0.0024   17.8   1.6      0.012   15.5   1.7    1.9  2  KR            KR domain
     0.0036   16.8   0.1     0.0047   16.4   0.1    1.3  1  Epimerase     NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.014   14.8   3.7      0.048   13.1   0.3    2.4  2  PALP          Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   4.1   6.1e-35   2.2e-31       1     233 [.      12     263 ..      12     264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 6.1e-35
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Gaa  +G a+ +a+a+eGa+v l+  + ++ +  ++e+a+++g++ + ++D+ d+e+v+a +e v+e+ g++D+ +n++g  +    p+ e+s ++f
    KIR61865.1  12 GAAGALGSAVSRAYAREGATVYLAGHRLDRvEMLAKEIAADGGRAyAHQVDALDPEAVDAHAELVAERAGGIDVSFNAVGLDHVQGVPLRELSLDDF 108
                   999***********************99999999*******998856***********************************99999********** PP

                   HHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT...... CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg...... 184
                      +++ ++  fl++ aa++ m e+  g iv ls  +a+  +p+    g+a a++e+l+r lA e+gp g+Rv +  p +i    + g         
    KIR61865.1 109 LLPMNTFVRTQFLTTAAAARRMVEQrsGVIVVLSTSAARAPMPS-GGFGVACAGIESLARELAGEVGPFGVRVVCLRPDAIPESVQHGSYVretwrr 204
                   ********************777666788888888888766776.789******************************9998776555433112222 PP

                   ....HHHHHHHHHHHST......TSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 185 ....fdelleelearap......lgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                       + + le + a  p      lgr++t  +va +a++Lasd++s+ tG++  v +G+
    KIR61865.1 205 aaeaNGATLEDMLAAKPgmpnplLGRAVTLADVAGTAVYLASDLSSGLTGSITTVGCGV 263
                   222222233333333334445569*******************************9996 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.0   1.8e-30   6.5e-27       2     182 ..       7     188 ..       6     199 .. 0.96

  Alignments for each domain:
  == domain 1  score: 94.3 bits;  conditional E-value: 1.8e-30
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S..S--SSGGGCSH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi..tgsgpfselse 98 
                 +++v Ga++ +G a+++++a+eGa+v++++ + +++e +ake+ ++g +a+a qvD  d e+v+a  e ++++ g++dv  n +G+   + +p  els 
  KIR61865.1   7 TAIVYGAAGALGSAVSRAYAREGATVYLAGHRLDRVEMLAKEIAADGGRAYAHQVDALDPEAVDAHAELVAERAGGIDVSFNAVGLdhVQGVPLRELSL 105
                 79************************************************************************************8878899****** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlv 182
                 +++   +++ +   fl+t+a+++ m++q+sG Iv  s  a++ p++++  ++ + a++++l+r+la e+ p g+rv+++ P ++
  KIR61865.1 106 DDFLLPMNTFVRTQFLTTAAAARRMVEQRSGVIVVLSTSAARAPMPSGG-FGVACAGIESLARELAGEVGPFGVRVVCLRPDAI 188
                 **********************************************986.67778************************99766 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.7   3.4e-06     0.012       3      88 ..       8      89 ..       7     167 .. 0.84
   2 ?    0.1   0.0      0.18   6.5e+02      15      36 ..     125     150 ..     121     195 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.4e-06
                EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE- CS
          KR  3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGviha 88
                 ++ G++G+LG +++r  a++ga+ + l + +    ++ + l +e++a g +  + ++D  d++av a  e + ++++ i   ++a
  KIR61865.1  8 AIVYGAAGALGSAVSRAYAREGAT-VYLAGHR---LDRVEMLAKEIAADGGRAYAHQVDALDPEAVDAHAELVAERAGGIDVSFNA 89
                5899******************95.7888888...45667799************************9999998888777665555 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.18
                 HHHHHHHHHHS-EEEEE-SS...... CS
          KR  15 elarwlaekgarhlvllsRsa....a 36 
                 + ar ++e+    +v+ls sa     
  KIR61865.1 125 AAARRMVEQRSGVIVVLSTSAarapM 150
                 56899999999999999999744440 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.3e-06    0.0047       2      58 ..       9      71 ..       8     147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.3e-06
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHH CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrsaler 58
                +V Ga+G +Gsa+ +a +++g +v    ++ ++ +  ++e +        +++d +d++a+++
  KIR61865.1  9 IVYGAAGALGSAVSRAYAREGATVYLAGHRLDRVEMLAKEIAadggraYAHQVDALDPEAVDA 71
                799********************9999999777766555544999999999999999997764 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   1.3e-05     0.048      96     149 ..      24      78 ..       7      95 .. 0.86
   2 ?    2.3   0.3     0.025        90     169     219 ..     157     216 ..     118     247 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
                 HHHHTT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTT..SHHHHHHHHTHHHH CS
        PALP  96 llrllGaevvevggdydeavaaaaelaaegegaylvsqfd..nptviegygtiglE 149
                 ++ + Ga+v + g   d+ + +a+e+aa+ +g+ +++q d  +p  +++++ +++E
  KIR61865.1  24 AYAREGATVYLAGHRLDRVEMLAKEIAAD-GGRAYAHQVDalDPEAVDAHAELVAE 78 
                 56789*******9989999999*******.***************99999888877 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHSTT-EEEEEEEC..TTCGGTTCCS..S.SS..B........SSS.CC CS
        PALP 169 gliaGiaaglkerrpdvrvigvepe..gsdalarslragrrvtvpvs.......dtiadg 219
                    aGi    +e  ++v  +gv ++  + da+ +s+++g++v+ +          t+ d 
  KIR61865.1 157 VACAGIESLARELAGEVGPFGVRVVclRPDAIPESVQHGSYVRETWRraaeangATLEDM 216
                 223455555555677777777776666677777777777777776655555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1899.45
//
Query:       KIR61866.1  [L=489]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-53  179.9  54.4    5.9e-52  176.7  49.7    1.9  2  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.058   12.6   0.1       0.14   11.4   0.1    1.6  1  Engrail_1_C_sig  Engrailed homeobox C-terminal signature doma
       0.15   11.6   1.1       0.37   10.3   1.1    1.6  1  DUF2270          Predicted integral membrane protein (DUF2270
       0.23    9.8  41.5     0.0073   14.7  17.9    2.4  2  MFS_3            Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.7  49.7   1.3e-55   5.9e-52       2     352 ..      23     407 ..      22     408 .. 0.96
   2 !   13.8   0.1   4.4e-06      0.02     117     195 ..     387     468 ..     384     483 .. 0.69

  Alignments for each domain:
  == domain 1  score: 176.7 bits;  conditional E-value: 1.3e-55
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 l a+f+ + ++sil++alp  ++e  g+s + + +++++yal aa ++l++Gr++d fGrrr++l+g++l+ +++ll+ fa++  +ll +rvlqG++ +
  KIR61866.1  23 LGAQFMLSVDFSILNVALP-RMGEGVGLSLADLPWVASAYALPAAGFTLLFGRIADLFGRRRLFLTGIALLTVASLLGGFATNAAMLLSARVLQGFANA 120
                 6689***************.******************************************************88888966666************** PP

       MFS_1 101 alfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 +++pa++al+   +++ + r+r++gl +a  s G+ +g+l+gg l+s+l Wr++f+i+ +v++  +vl  l++ e+ ++ + k +++            
  KIR61866.1 121 IAIPAAMALLITTVSDeRARARVLGLNGALLSGGFTVGALVGGSLVSALDWRWAFWINVPVAVAIMVLTPLVIKESVRPAGVKLDVPGAvtvtagllal 219
                 *********999999989*******************************************************9999999999999999********** PP

       MFS_1 189 .........................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailal 262
                                          + +++aplv+ +++l +++  w   ++ +++f++ sg+ + l+ly+q+vl+++  +++gl+++ ++lv++++++
  KIR61866.1 220 vygvsmqswialvvgavliaafwfvELKAKAPLVS-LTLLNRPNIKW-GNYGGIVAFVMASGVNFGLTLYMQDVLKMA-PFTTGLVFGGPGLVAVVAGV 315
                 ***********************************.8888888877*.99999999999999****************.8******************* PP

       MFS_1 263 lagrlsdrlgrrrrlllallllllaalglallavtssavllll..vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 +agr++ r+g r+ l ++ll+  l+++ l+l++++++++l+l+  +l+l+ fg+ ++++++++ a++ +  +++g a+gl+++a++++  +g
  KIR61866.1 316 IAGRMIGRYGYRNVLAVGLLAQGLTTVPLLLTGTSTTPSLALIvpSLFLMYFGHVTAVVAYTVTATSGLDDSQQGLATGLATLAQQIAVTIG 407
                 ***********************************99999999988999999************************************9987 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 4.4e-06
       MFS_1 117 eergraigllsagfslGailg.pllggllasslg....Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpap 195
                 +++g+a+gl++++ ++++ +g p++g+l+a+        + ++ +  +v l+++ l+++ l+++ ++ +++s++ e  +++p p
  KIR61866.1 387 SQQGLATGLATLAQQIAVTIGiPIFGALVAARTDvldgVHFAMQVQIVVILVSVALIWIGLRDRGVPAGPSSSAAE--RQEPVP 468
                 689******************5555555556666999999999999999999966544444444444444444444..333333 PP

>> Engrail_1_C_sig  Engrailed homeobox C-terminal signature domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   3.1e-05      0.14       3      17 ..     325     339 ..     324     340 .. 0.97

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.1e-05
  Engrail_1_C_sig   3 GqkNtLAlqLMAQGL 17 
                      G++N LA+ L AQGL
       KIR61866.1 325 GYRNVLAVGLLAQGL 339
                      99************9 PP

>> DUF2270  Predicted integral membrane protein (DUF2270)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.1   8.2e-05      0.37      25      62 ..     209     246 ..     204     248 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8.2e-05
     DUF2270  25 avvvtaallsvalsspeashavlllgmllvlvfLliea 62 
                 av+vta+ll+++++ + +s ++l++g +l+++f+++e 
  KIR61866.1 209 AVTVTAGLLALVYGVSMQSWIALVVGAVLIAAFWFVEL 246
                 9***********************************96 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7  17.9   1.6e-06    0.0073      49     196 ..      56     200 ..      25     267 .. 0.76
   2 ?    0.9  15.4     0.026   1.2e+02     227     389 ..     270     442 ..     261     470 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.6e-06
       MFS_3  49 lvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAva.Lnsv 146
                  v  a +LP   +++l G +aD f rR+++l++ +ll ++s+l         ++  +ll   +l g   a+  Pa  A +   v+ +  +a v+ Ln  
  KIR61866.1  56 WVASAYALPAAGFTLLFGRIADLFGRRRLFLTGIALLTVASLLGGFA-----TNAAMLLSARVLQGFANAIAIPAAMALLITTVSDERARARVLgLNGA 149
                 5778999**************************99998888765443.....4678999*************************999999988558888 PP

       MFS_3 147 giniaRsvGPAlgGvlvaavGaalafavnalsylali.vallrwkrevrks 196
                  +    +vG  +gG lv+a+   +af +n+   +a++ ++ l +k +vr+ 
  KIR61866.1 150 LLSGGFTVGALVGGSLVSALDWRWAFWINVPVAVAIMvLTPLVIKESVRPA 200
                 8888899********************998555544303334445544443 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.026
       MFS_3 227 aalFglsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaav.....alAlvllslalasslwvavlvlllgGaa 320
                 +++ +++as v   L l  +d l+  + + G+++g+ G+ A++++++  r+  r +  +++++  +     ++ l l  ++ ++sl+++v+ l l   +
  KIR61866.1 270 GIVAFVMASGVNFGLTLYMQDVLKMAPFTTGLVFGGPGLVAVVAGVIAGRMIGRYGYRNVLAVGLLaqgltTVPLLLTGTSTTPSLALIVPSLFLMYFG 368
                 5667888899999999********************************99988887777666555400000455566677889999999********** PP

       MFS_3 321 WitalstlnvavqlavPrWvvgRalavYltvlaGglaaGsllWGavaeal.....svtlaLlaaaaalllaaai 389
                  +ta+  + v++   + +  +g a  +   + + +++ G  ++Ga++ a      +v++a+++  + +l+++a+
  KIR61866.1 369 HVTAVVAYTVTATSGLDDSQQGLATGLATLAQQIAVTIGIPIFGALVAARtdvldGVHFAMQVQIVVILVSVAL 442
                 ************99999999999999999999999999999999865543122225777777777766666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       852  (0.0475208); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 3095.24
//
Query:       KIR61867.1  [L=513]
Description: choline dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-75  254.8   0.0    1.3e-75  254.5   0.0    1.1  1  GMC_oxred_N    GMC oxidoreductase
    4.9e-40  137.4   0.1    8.3e-40  136.6   0.1    1.4  1  GMC_oxred_C    GMC oxidoreductase
    2.7e-07   30.1   0.5     0.0066   15.6   0.0    2.6  3  FAD_binding_2  FAD binding domain
    9.5e-07   28.7   3.3    6.3e-06   26.0   3.3    2.4  1  DAO            FAD dependent oxidoreductase
    2.7e-05   24.3   0.0    7.4e-05   22.9   0.0    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    7.5e-05   22.1   0.0       0.07   12.3   0.0    2.6  3  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00063   18.9   0.4     0.0012   18.0   0.0    1.7  2  Lycopene_cycl  Lycopene cyclase protein
    0.00072   18.9   0.0        1.3    8.3   0.0    3.0  3  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.5   0.0   5.9e-79   1.3e-75       2     295 ..       6     295 ..       5     296 .. 0.95

  Alignments for each domain:
  == domain 1  score: 254.5 bits;  conditional E-value: 5.9e-79
  GMC_oxred_N   2 delveggGsagsvvAaRLsedpstsvlvleaggreknrl..imvlalalklidkklntayetepekalngrrlilpaGktlGGgsvvNwsayiRtpaa 97 
                  d+lv+g+Gsag+++AaRLsedp+ +vl+leag++    +   + l++ + +++ + +++++ e    +++rr+i+p+Gk+ GG+s+v +++ +R++ +
   KIR61867.1   6 DYLVVGSGSAGAALAARLSEDPARRVLLLEAGPDFATVAetPTDLLDGSAMSMDRHDWHFKAE---ITDRRRIIFPRGKVTGGSSAVGATIALRGTPN 100
                  9*********************************99988766777778888889999998865...68****************************** PP

  GMC_oxred_N  98 dldeWeeeaglegwssdevlpafkkvetaqalesdlhgvdgrlgv.tekgkeesplnkallkaaeelGlpvprdlngkhqcGvcllgvtcrtgarqst 194
                   +deW+e  g++ w++devlp++k++e++q++++++hg+ g++++ + + +e  p  +++++a+ ++G+p ++d n  + +Gv+ ++ +++   r+st
   KIR61867.1 101 NFDEWAEL-GNPAWAWDEVLPFYKRLEDDQDFDNEYHGKGGPIPIhRFTPDEMTPVQHVFRDACVKAGFPEVEDHNHPEATGVGPIPSNRQGSHRFST 197
                  *******9.************************************444555566777******************************999999***** PP

  GMC_oxred_N 195 arawLrpalerpnleiltgakaekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgvdvvvdlp.vGknL 291
                  a  +L +a  r+nlei +g++++++++   ++ra GVe+ + +g+  + v++a  vv+aaGa+nsP +L+rSG+G+a +L+ +g+dvv+d+p vG+ L
   KIR61867.1 198 AMGYLAEARGRENLEIRSGVQVNRVLFT--GNRARGVEVAKAGGG--TEVIEAGTVVLAAGAVNSPAILMRSGIGPAGDLRRLGIDVVLDRPgVGADL 291
                  ***************************9..***************..999************************************************ PP

  GMC_oxred_N 292 qdHp 295
                   dHp
   KIR61867.1 292 IDHP 295
                  ***8 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   0.1   3.7e-43   8.3e-40       1     144 []     367     506 ..     367     506 .. 0.91

  Alignments for each domain:
  == domain 1  score: 136.6 bits;  conditional E-value: 3.7e-43
                  ----EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B-S CS
  GMC_oxred_C   1 PesrGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMGa 98 
                  PesrGr+tl+s+dpt++p++ +n+l+++rd+++lv+a++++ +++++a+  ++ ++ +++   +  ++ v++de ++ +v+ +  +++Hp+Gt+rMGa
   KIR61867.1 367 PESRGRLTLTSADPTAPPDVVLNFLDTERDIQTLVDAVRQCWQFMQTAG--INDQGQRFV---VLGEDMVADDELMRHYVRLSLDSGYHPVGTARMGA 459
                  99**********************************************5..344444444...3455678888888889999999************* PP

                  TCGC.BSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  99 dpkd.sVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  + ++ +VVD++lrvhg+++L+V+DaSv+Ps++++n++lt ++++e++
   KIR61867.1 460 AGDEgAVVDERLRVHGTEGLYVCDASVMPSIVNCNTNLTSIMIGERL 506
                  *********************************************95 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.9e-06    0.0066       1      49 [.       6      52 ..       6      70 .. 0.76
   2 !   12.0   0.1   3.5e-05     0.078     149     204 ..     203     258 ..     168     273 .. 0.80
   3 ?   -2.8   0.0       1.1   2.5e+03     278     301 ..     416     442 ..     414     456 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.9e-06
                   SEEEE--SHHHHHHHHHHHHTTT.-EEEEESSSGGGSGGGG--S-EE-TT CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGl.kvavvekeqefggatawsqGgidavl 49
                   D +V+GsG AG a A++++e  + +v+++e ++     ++ ++   d+++
     KIR61867.1  6 DYLVVGSGSAGAALAARLSEDPArRVLLLEAGPD---FATVAETPTDLLD 52
                   789*****************9888********99...5555666666655 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.5e-05
                    HHHHTCT.EEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 149 esarkag.vdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgr 204
                    ++ar ++ ++++   ++++++ +++r++G++v+ +++g+++ i+a  vvla+g+++ 
     KIR61867.1 203 AEARGREnLEIRSGVQVNRVLFTGNRARGVEVA-KAGGGTEVIEAGTVVLAAGAVNS 258
                    333344469************************.666666669999*******9986 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.1
                    E-TTSSBTH...GGGS-HHHHHHHHH. CS
  FAD_binding_2 278 vdkdGrrFm...nelasrdvvsraile 301
                    ++++G+rF+   +++ ++d+++r +++
     KIR61867.1 416 INDQGQRFVvlgEDMVADDELMRHYVR 442
                    6899****9998777788888877765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   3.3   2.8e-09   6.3e-06       1     258 [.       6     304 ..       6     410 .. 0.67

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.8e-09
                 EEEEECTSHHHHHHHHHHHHTT...EEEEESSSSTTSSGGGSSEEEEESSS...STHHSTH.............................HHHHHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg...VtllekgdiagsgaSgrnsgllhsgl...rylpeas.............................elarlslea 64 
                 d +++G+G +G++ A  L++ +   V+lle+g++++       + ll ++    +     +                             +    +l++
  KIR61867.1   6 DYLVVGSGSAGAALAARLSEDParrVLLLEAGPDFA-TVAETPTDLLDGSAmsmD----RHdwhfkaeitdrrriifprgkvtggssavgA--TIALRG 97 
                 789****************998889***********.999999999988664331....33455688889999*************98662..455555 PP

                 H....HHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHHHHHHHHHH.........HHTTT.TE.EEEEHHHHHHHSTT.ST....TTSEEEE.ETTEEE CS
         DAO  65 l....eelreleeelgididyrrtGllslaadeeelealdkllall.........leagl.da.elldaeevrelepa.lp....gllgalf.ypdtgq 142
                      +e++el    ++   + +  +l+ +   e+ +++d++++           ++    ++ ++++ + v++ +p   +    + + +++  p+  q
  KIR61867.1  98 TpnnfDEWAELG---NP--AWAWDEVLPFYKRLEDDQDFDNEYHGKggpipihrfTPDEMtPVqHVFRDACVKAGFPEvEDhnhpE-ATGVGpIPSNRQ 190
                 321125555555...54..3566677887654334566887777654444444443222233323555556666666542244432.222333555555 PP

                 E.EHHHHHHHHHHHHHHTT.-EEEESECEEEEEEEETCEEEEE.EECT.EEEEEEEE..EEE--GGGHH..HHHTT.CTTTSEEEEEEEEEEEEEECCT CS
         DAO 143 v.dpakltaalaraaealG.veilegtevtgleeedgkvwgve.rttp.gendaada..vVnaaGawsd..llgll.keldlpispvrgqvlvlkplse 232
                   + +  + +++++a+ +   ei+ g +v ++  +++++ gve  ++  g++  ++a  vV+aaGa  +  +l +  ++   p   +r   + +  l++
  KIR61867.1 191 GsHRFSTAMGYLAEARGREnLEIRSGVQVNRVLFTGNRARGVEvAKAGgGTE-VIEAgtVVLAAGAVNSpaIL-MRsGIG--PAGDLRRLGIDV-VLDR 284
                 446666666688888777658**********877888899998544444444.335555******97554322.111211..333344444444.2222 PP

                 HSTGSGCSEEEEEEEETTTTEEEEEE CS
         DAO 233 klvspaailpvpetdddgrgvyvtpr 258
                     p  + +++ +d++ +g +++p 
  KIR61867.1 285 ----P-GVGADL-IDHPRTGAFMVPQ 304
                 ....2.222233.6677777777776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   3.3e-08   7.4e-05       1      42 [.       9      53 ..       9      70 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3.3e-08
                   EE--SHHHHHHHHHHHCC.TEEEEEE-SSSSSSGGG-EECE..TT CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvlllekrdrlGGraasyev..pg 42
                   +vG+G +G+++A++L+++  ++vllle+++++   a + ++  +g
     KIR61867.1  9 VVGSGSAGAALAARLSEDpARRVLLLEAGPDFATVAETPTDllDG 53
                   8****************96779*********98888777666655 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.1e-05      0.07       2      49 ..       6      54 ..       5      77 .. 0.84
   2 !    6.9   0.0    0.0014       3.1     191     244 ..     204     262 ..     167     275 .. 0.66
   3 ?   -2.6   0.0       1.1   2.6e+03     256     274 ..     463     482 ..     451     486 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.1e-05
                 SEEEE--SHHHHHHHHHHHH.HTS-EEEEETTHCHHHCSHHHHCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq.agakvtlvelegtclnggcllskallgv 49
                 d++v+G+G AG a+a +l++    +v+l+e++  + ++   ++  l g+
   KIR61867.1  6 DYLVVGSGSAGAALAARLSEdPARRVLLLEAGPDFATVAETPTDLLDGS 54
                 789*****************44888999999999988877777666655 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0014
                  HHHHHTTEEEEESCEEEEEEETTE...EEE.EEETTSCE.EEESEEEE-S-EEES-HHC CS
                  xxxxxxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 191 ealekeGvevklgtsvkeidgnge...kle.vvledgee.idadlvvvavGvrpstell 244
                  ea+ +e+ e++ g +v+++   g+    +e  + + g+e i+a +vv+a+G   s+++l
   KIR61867.1 204 EARGRENLEIRSGVQVNRVLFTGNrarGVEvAKAGGGTEvIEAGTVVLAAGAVNSPAIL 262
                  44445556666666666554444433555544444444467777777777777666665 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.1
                  TEEE--TTSBES.STTEEE- CS
                  xxxxxxxxxxxx.xxxxxxx RF
  Pyr_redox_2 256 ggivvdeflrtn.vpgiyai 274
                   g vvde+lr+   +g+y++
   KIR61867.1 463 EGAVVDERLRVHgTEGLYVC 482
                  5679******9889999998 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   5.5e-07    0.0012       1      37 [.       6      41 ..       6      63 .. 0.89
   2 ?   -4.1   0.1       2.8   6.3e+03     113     142 ..     233     256 ..     214     263 .. 0.54

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 5.5e-07
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsll 37
                   D +v+G+G Ag +lAarl ++ p+ +v+l+ea+p+  
     KIR61867.1  6 DYLVVGSGSAGAALAARL-SEDPARRVLLLEAGPDFA 41
                   779***************.8999***********975 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2.8
  Lycopene_cycl 113 eeeeageslvvleggrkirarlvvdargla 142
                    e ++ag  +        i+a +vv a g+ 
     KIR61867.1 233 EVAKAGGGTE------VIEAGTVVLAAGAV 256
                    3333333333......56666666666643 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0066        15       1      31 [.       8      38 ..       8      50 .. 0.88
   2 !    8.3   0.0   0.00056       1.3      81     145 ..     196     266 ..     169     275 .. 0.80
   3 ?    3.2   0.0     0.019        44       9      69 ..     266     324 ..     264     343 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0066
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgn 31
                 +++G G aG a a  l +    ++l lE g 
   KIR61867.1  8 LVVGSGSAGAALAARLSEDPARRVLLLEAGP 38
                 69**************************985 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00056
  Pyr_redox_3  81 kealeYlrevaksfelpiklfeeVesvkk...edegfevetske...tyeAkkviiAtGefdkPnklnipG 145
                   +a+ Yl+e   +++l+i+   +V++v      ++g ev    +   ++eA +v++A+G  + P  l  +G
   KIR61867.1 196 STAMGYLAEARGRENLEIRSGVQVNRVLFtgnRARGVEVAKAGGgteVIEAGTVVLAAGAVNSPAILMRSG 266
                  67889**********************983223455667665545669************99998876555 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.019
  Pyr_redox_3   9 GlaaaielkkagledylilEkgnignsiyrypkemtfispsftsekleipdlnaiseetsp 69 
                  G++ a  l+++g++  ++l++  +g+ + + p++  f+ p++ s + e p l+ i   t p
   KIR61867.1 266 GIGPAGDLRRLGID--VVLDRPGVGADLIDHPRTGAFMVPQEGSFSPEDPFLQTILRTTAP 324
                  999999*******5..7*********************99988877777778777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3362.62
//
Query:       KIR61868.1  [L=216]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-18   67.9   0.7      1e-18   67.9   0.7    2.3  2  TetR_C_33  Tetracyclin repressor-like, C-terminal domain
    1.8e-12   46.9   1.3    3.2e-12   46.0   1.3    1.5  1  TetR_N     Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.092   12.8   0.4         10    6.2   0.3    2.4  2  TetR_C_27  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_C_33  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   1.7     0.058   3.5e+02      46      98 ..      13      62 ..       4      71 .. 0.62
   2 !   67.9   0.7   1.8e-22     1e-18       2     104 .]      86     190 ..      85     190 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.058
                HHHHHHGGG---TH--CC.HHHHHHHHHHHHHHHHHHHHCTTT.TSSS-HHHHHH CS
   TetR_C_33 46 lllaalaalvaaglppad.avaaaralwaalhGlvsLelfghf.glpadpdalfe 98
                +ll+a+a+l       ++ a  +++   aa+ G+ +  +  hf g++  ++a+++
  KIR61868.1 13 ALLEAAARL-----LAEEgAAGLTTRRLAAAVGASTTAVYTHFgGMDNLVRAMVH 62
                223333333.....34444778888888899999999999999655444455544 PP

  == domain 2  score: 67.9 bits;  conditional E-value: 1.8e-22
                 HHHHHHHHHHHHH-HHHHHHCCSS--TT-S-.HGHHCCCCHHHHHHHHHHHGGG---TH-.-CCHHHHHHHHHHHHHHHHHHHHCTTTTSSS-HHHHHH CS
   TetR_C_33   2 ralarayrrfAlahpaeYallfgspvpgyaa.pdelaaagarvlalllaalaalvaaglp.padavaaaralwaalhGlvsLelfghfglpadpdalfe 98 
                  al+ ayr+  l+hp++Y+++fgs + g  a  +  +++g+ +l+ l++a+a++ ++++   +d++ +a  +w alhGlvsLel g +  p d+d  fe
  KIR61868.1  86 MALGYAYRANSLDHPQLYQVMFGSAALGGFAlSEGDRQHGKYTLQPLVDAVARATEQDRFrAGDPLLVAQNMWIALHGLVSLELGGYLIDPYDADVCFE 184
                 79********************99998777745799***************9886666654888************************66********* PP

                 HHHHHH CS
   TetR_C_33  99 rlvdal 104
                 ++++ l
  KIR61868.1 185 AQLRSL 190
                 *99875 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   1.3   5.4e-16   3.2e-12       1      47 []      14      60 ..      14      60 .. 0.98

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 5.4e-16
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                +l+aA++l+ae+G +++t+r++A+++G s  a+Y +F++++ L++a+
  KIR61868.1 14 LLEAAARLLAEEGAAGLTTRRLAAAVGASTTAVYTHFGGMDNLVRAM 60
                79******************************************996 PP

>> TetR_C_27  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.3    0.0017        10      31      82 ..      36      87 ..      10      92 .. 0.92
   2 ?    4.7   0.0    0.0053        32      42      82 ..     122     162 ..      86     169 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0017
                HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCT-STT--HHHHHHHHHHHSG CS
   TetR_C_27 31 vvlieeelevvekhieeleeqlaeIireGvaaGeFkaadpeaaaravfdata 82
                ++++ ++ ++v  h   +++++   ++eG+a+ + + + ++a++ av+d++a
  KIR61868.1 36 AAAVGASTTAVYTHFGGMDNLVRAMVHEGFARLHRRMSTVRATSDAVADVMA 87
                5678889999************************999999999999999875 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0053
                 HHHHHHHHHHHHHHHHHHHHCT-STT--HHHHHHHHHHHSG CS
   TetR_C_27  42 ekhieeleeqlaeIireGvaaGeFkaadpeaaaravfdata 82 
                 ++h +   + l + ++++ +++ F+a dp   a+ ++ a+ 
  KIR61868.1 122 RQHGKYTLQPLVDAVARATEQDRFRAGDPLLVAQNMWIALH 162
                 567777777788899**************999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1554.72
//
Query:       KIR61869.1  [L=448]
Description: hypothetical protein TK50_30910 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.2e-101  339.1   0.0   5.9e-101  338.9   0.0    1.0  1  RPE65     Retinal pigment epithelial membrane protein


Domain annotation for each model (and alignments):
>> RPE65  Retinal pigment epithelial membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.9   0.0  3.3e-105  5.9e-101       3     462 ..      19     446 ..      17     447 .. 0.85

  Alignments for each domain:
  == domain 1  score: 338.9 bits;  conditional E-value: 3.3e-105
                 ---S-EEEC--E..EEE---TT--EEEEEEEEE.ESCETTCCSSSGGGSEEEEEEEEECTTEE.EEEEEE---HHHHHHHHHTS--SBSTTTTSB---- CS
       RPE65   3 pvreevpeplevkvieGeiPawlkGtllRnGpgkpevgedgkvshwFDGdGmlhrfefkdgkv.tyrnRfvrtdaylaerkagkslfdglpakkkknna 100
                 pv +e +e l+++v +G++Pa+l+G ++R+Gp+ p  g  ++ +h + GdGm+h++++++g++ +yrnR++rtd+    r+ g++  +g p+    +na
  KIR61869.1  19 PVATEATE-LDLTV-TGRLPAELDGCFVRIGPN-PVGG--DRPGHALVGDGMVHGVRLRSGRAlWYRNRWIRTDRTT--RALGELALPG-PRHGLSDNA 109
                 67777755.59999.7*****************.8766..******************998777***********95..5555655532.2556788** PP

                 -SEEEEETTEEEEEETTC.EEEEEETTTTEEEEE--CCC.TTS-B-SS-EEETTCEEEEEEEECCTCECEEEEEEE-.T...T-.EEEEEEEECS.S.. CS
       RPE65 101 ntnvvyhggrllalteag.kpyeidpetLetlgkvdldg.eseaftAHpkvdpetgelynfglslgkppsvtysvfdvaaaidk.srevkiklpgeklk 196
                 n nv++hggr+lal eag  p+e+d ++L  + ++d+d      f+AH+  dp+tgel+++ +  ++ p+v   v+ ++   ++ +r+++i++ g    
  KIR61869.1 110 NANVIRHGGRTLALGEAGvLPVELD-DELGSVARIDFDAtLPHGFAAHAECDPVTGELFAVAYY-HELPYVEHLVLTPE---GRvRRSERIEVAG---- 199
                 ***************9883699***.9**********75533588*****************95.556779999**977...6668899999888.... PP

                 ------EEE-SSEEEEEE--EECHC.HCCCTCGGCEEE-TTS-EEEEEEETTTT--GG...EEEEE--SEEEEEEEEEEET.TCEEEEEEEEE.SS.-- CS
       RPE65 197 payiHdfalTenyvvlvelplklnlkkgkksggdalewdpekptrfgvipRrgekegvakfrwfeteaffvfHtaNayeeeedgevvvdlcryedaevl 295
                 p ++H+ alT+++ vl++lp++++++  +++   +++w++ + +r+g++pR+g  +g  + rwf++++++vfH +Naye + d++v vd++r   + v+
  KIR61869.1 200 PPLMHSLALTDRHSVLFDLPVTFSPTLARAGSRFPYAWQRGRAARLGLLPREG--RGA-DVRWFDVDPCYVFHPVNAYEVD-DTCV-VDVVRH--DRVF 291
                 ***********************9977666667778****************7..232.238****************995.7767.******..4366 PP

                 STTS-CT.T----.-...GGTGGG-EEEEEEEEETTTTTCEECE.EEEEESS-EEEEE--GGGTTS--SEEEEEE-SSTTSS-..-..-EEEEEET-TT CS
       RPE65 296 dnlylenlrsrkgeakkeekaeesqsrlrryrldlktgsateekeeaalsdrslEfPrinpaysgrkyryvYgasasggsdkaskf..dglvkvDletk 392
                 d+  + +               es ++l+r++ldl++g+++ e    +l+d++ EfPri++++ + ++ry+Y++++++g  ++  +  ++l+++Dl  +
  KIR61869.1 292 DRDLHAP--------------GESAPTLWRWTLDLTRGTVAAE----QLDDIPQEFPRIDERRKTMRHRYAYTVAMQSGA-GV--LggSALLRHDLLRR 369
                 6663332..............24678*********99999999....9****************************8773.33..3359*******555 PP

                 TE...........EE--EEEEESTTTSSTT-EEEEEEEEET.TTEEEEEEEETTBCCC..SEEEEESS---S--BEEEE CS
       RPE65 393 grea......eghypgEpiFVPragateEDdGvllsvvlde.eersellvldAktlte..vArvelpqrvpygfHGtfv 462
                   e+      ++  +gE++FVPr+  ++EDdG+ll++v+d  ++rs+l+vldA ++t   vA v+lp rvp gfH +++
  KIR61869.1 370 --EVavhdfgPHREAGEAVFVPRGPLSAEDDGWLLTYVHDGrTGRSDLVVLDAGDFTGepVAVVHLPGRVPSGFHANWI 446
                 ..333466665558*************************99****************9********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       158  (0.00881254); expected 358.6 (0.02)
Passed bias filter:                      138  (0.00769703); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3259.45
//
Query:       KIR61870.1  [L=197]
Description: hypothetical protein TK50_30915 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1585.71
//
Query:       KIR61871.1  [L=291]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-38  131.0   0.0    5.4e-38  130.4   0.0    1.3  1  adh_short       short chain dehydrogenase
    7.5e-31  107.5   0.0    1.1e-30  106.9   0.0    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    8.4e-10   38.8   0.0    1.2e-09   38.4   0.0    1.2  1  KR              KR domain
    1.5e-07   31.5   0.0    3.3e-07   30.4   0.0    1.6  2  NAD_binding_10  NAD(P)H-binding
     0.0086   15.6   0.0      0.016   14.7   0.0    1.4  1  Epimerase       NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.015   14.9   0.0      0.021   14.4   0.0    1.2  1  NmrA            NmrA-like family
      0.015   14.7   0.0      0.068   12.5   0.0    1.8  1  DUF1776         Fungal family of unknown function (DUF1776)
      0.048   13.9   0.0       0.08   13.2   0.0    1.3  1  TrkA_N          TrkA-N domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.0   2.4e-41   5.4e-38       6     183 ..      16     187 ..       5     198 .. 0.95

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 2.4e-41
                 ESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHHHHH CS
   adh_short   6 tGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeewerv 104
                 tG ssG G+a+a +l ++G+ v++++r+ e+l+ +a+e       ++++ +Dv+d+e++ a+v+++ +++g +  L+nNA+ + +g++ e+  +e+++ 
  KIR61871.1  16 TGMSSGSGKATALRLHRAGWPVYATGRNVEALADLADE------GITVLYLDVNDEESMTAAVKRITDEHGAVGTLINNAAYSLNGTIGETPMDEVRAQ 108
                 8889999*********************9999887777......38999************************************************** PP

                 HHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS CS
   adh_short 105 ievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvd 183
                 +e+N++g+  lt++vlp m +q +GrI+ +sS+ g  + +g   Y A+K+a++++++sl+ e+ap gi+v++++P+++ 
  KIR61871.1 109 FETNVFGLCRLTQLVLPGMREQGGGRIIMMSSIFGMFATPGRGYYQATKHALEAISDSLRLEVAPFGIKVVVLQPAPIL 187
                 ***************************************************************************9986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.0   4.9e-34   1.1e-30       1     174 [.      17     186 ..      17     193 .. 0.96

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 4.9e-34
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   G+ sg G+a+A +l+++G+ v +t +n ea   +++la+e g +vl +DV+dee+++a+v+++++++g +  l+nna+++ +  g + et+ +e++ 
    KIR61871.1  17 GMSSGSGKATALRLHRAGWPVYATGRNVEA---LADLADE-GITVLYLDVNDEESMTAAVKRITDEHGAVGTLINNAAYSLN--GTIGETPMDEVRA 107
                   778999***********************9...9999997.889**************************************..************* PP

                   HHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--B CS
  adh_short_C2  98 aldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpi 174
                    +++n+ +l +l++ +lp m+e+  g+i+ +ss+ +  ++p+   y+a+K+alea++ +l  e++p gi+v +  p pi
    KIR61871.1 108 QFETNVFGLCRLTQLVLPGMREQggGRIIMMSSIFGMFATPGRGYYQATKHALEAISDSLRLEVAPFGIKVVVLQPAPI 186
                   ******************7776669***************************************************998 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   5.2e-13   1.2e-09      44     166 ..      43     170 ..       5     184 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 5.2e-13
                 HHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEH CS
          KR  44 liaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelled....esldffvlfSSi 137
                 ++++l++l +  ++v+ +Dv d+++++a++++i++e++++   i+ A  + ++++ e+ ++++++ ++  v G+  L +l+ +    +    ++++SSi
  KIR61871.1  43 NVEALADLaDEGITVLYLDVNDEESMTAAVKRITDEHGAVGTLINNAAYSLNGTIGETPMDEVRAQFETNVFGLCRLTQLVLPgmreQGGGRIIMMSSI 141
                 4444444434456777899*************************************************************988666567789******* PP

                 HHHH--TT-HHHHHHHHHHHHHHHHHHHH CS
          KR 138 agllgsagqanYaaaNaflDalaeyrrsq 166
                  g++ ++g++ Y+a+ + l+a+ ++ r +
  KIR61871.1 142 FGMFATPGRGYYQATKHALEAISDSLRLE 170
                 *********************98877655 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   1.5e-10   3.3e-07       6     102 ..      22     144 ..      17     187 .. 0.72
   2 ?   -2.7   0.0       2.1   4.8e+03     161     182 ..     229     251 ..     220     253 .. 0.58

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1.5e-10
                     HHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHT....T-SEEEES-.........--TCCHHHH.......... CS
  NAD_binding_10   6 vGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealk....gadaVvsal.........ggggkdeeg.......... 77 
                      G++ + +l ++ g++v a  Rn e la+l+ +eg++v+ +dv+d+e++++a+k     + aV + +                 +          
      KIR61871.1  22 SGKATALRLHRA-GWPVYATGRNVEALADLA-DEGITVLYLDVNDEESMTAAVKritdEHGAVGTLInnaayslngT-------Igetpmdevra 107
                     577888888899.6****************7.6********************955554447877774444444331.......12223344456 PP

                     ............HHHHHHHHHHCT--EEEEEEETTTT CS
  NAD_binding_10  78 ............aknivdaakeagvkRfvlvsaigvg 102
                                 ++ ++  ++e+g  R++++s+i   
      KIR61871.1 108 qfetnvfglcrlTQLVLPGMREQGGGRIIMMSSIFGM 144
                     778889999999*********************7433 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.1
                     SS----.EEEHHHHHHHHHHHCT CS
  NAD_binding_10 161 epfkgg.sisradVAdvlvavld 182
                     +p++g+  +  ++VA+vl  +++
      KIR61871.1 229 PPLRGKiAVRAENVAKVLETAVS 251
                     33333337788888888876665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     7e-06     0.016       4     172 ..      16     186 ..      15     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7e-06
                 ETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HH....HHHHHHHHH.T-SEEEE--S---HHHHHHSHHHHHHHHTHHHHH CS
   Epimerase   4 tGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrs....alerlfkee.qpdavihlAavggvaassedpadfieknlqgtln 97 
                 tG +   G+a++ +l ++g+ v +  r+ +a +  ++e +++ +ld+ d++    a++r+ +e+ ++ + i+ Aa++  ++  e+p d  e  +q  +n
  KIR61871.1  16 TGMSSGSGKATALRLHRAGWPVYATGRNVEALADLADEGITVLYLDVNDEEsmtaAVKRITDEHgAVGTLINNAAYSLNGTIGETPMD--EVRAQFETN 112
                 67777789********************888888888888**********988889999999**999*********999999999999..666888899 PP

                 HHHHHH..........HHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH...T-EEEEEEESEE CS
   Epimerase  98 lleaar..........kagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy...glnaiilrlfnl 172
                 ++  +r          ++g  r++ +sS  ++G  a+            + +  Y a+K+a e +  +++ +    g+++++l +  +
  KIR61871.1 113 VFGLCRltqlvlpgmrEQGGGRIIMMSS--IFGMFAT------------PGRGYYQATKHALEAISDSLRLEVapfGIKVVVLQPAPI 186
                 9999997777778877778889999999..9997777............346777777777777777777664222566666666655 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   9.5e-06     0.021      11      64 ..      23      74 ..       7      79 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.5e-06
                HHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT CS
        NmrA 11 GksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkg 64
                Gk+ +  l +ag++v a  R++  e+++ l+++G +++  d++d+es+ +a+k 
  KIR61871.1 23 GKATALRLHRAGWPVYATGRNV--EALADLADEGITVLYLDVNDEESMTAAVKR 74
                44444455669*********98..5789************************96 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     3e-05     0.068      97     195 ..      85     181 ..      24     184 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-05
     DUF1776  97 lvPslsy.ptgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtq 194
                 l+ +  y   g i + p+++++ +++++++    ++q  lp +++   q    i++  si      p  +    +  al+a+  +L+ e++p +i+v+ 
  KIR61871.1  85 LINNAAYsLNGTIGETPMDEVRAQFETNVFGLCRLTQLVLPGMRE---QGGGRIIMMSSIFGMFATPGRGYYQATKHALEAISDSLRLEVAPFGIKVVV 180
                 445556668999********************************8...5555566668***************************************97 PP

     DUF1776 195 i 195
                 +
  KIR61871.1 181 L 181
                 6 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.6e-05      0.08      10      58 ..      23      71 ..      19      93 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.6e-05
                HHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHT CS
      TrkA_N 10 GrslaeeLseggkdvvvidkdeerveelreeglevvvgdatdeevLeea 58
                G++ a +L+++g++v++  ++ e+++ l++eg++v++ d+ dee + +a
  KIR61871.1 23 GKATALRLHRAGWPVYATGRNVEALADLADEGITVLYLDVNDEESMTAA 71
                88999999998889******************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2250.58
//
Query:       KIR61872.1  [L=199]
Description: peroxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-09   35.7   0.0    3.7e-07   30.1   0.0    2.1  2  CMD       Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   2.1e-11   3.7e-07       2      64 ..      52     113 ..      51     122 .. 0.87
   2 !    3.9   0.2    0.0031        55      21      79 ..     123     181 ..     108     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 2.1e-11
                 HHHHHHHHHHHHHCCGSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHH CS
         CMD   2 ellraltalreallareggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevl 64 
                  ll+ + a +++++  ++ L+++++eLi+  +s +ngc yCv  H   + + G ++e + +v 
  KIR61872.1  52 RLLAVVLAGYGGIFG-GDTLPRQLKELISAWTSKLNGCPYCVGTHSWFLSQFGGSDELLEAVS 113
                 566777778889998.889**********************************9999877765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0031
                 S-HHHHHHHHHHHHHHTT-HHHH.HHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHH CS
         CMD  21 LdpkereLialavsaangceyCv.daHtraAleaGvteeeiaevlaqaaayagwpaaraA 79 
                 +d ++  L+ l++ +++g    + da  ++A  aG ++ e  e++  a   a+ +++++A
  KIR61872.1 123 VDERTMPLMRLVTKVSTGAYK-ItDADWEQAAAAGWSDAEMLEAVFCACLFAFINRLVDA 181
                 677888888899999999555.77*********************999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1596.40
//
Query:       KIR61873.1  [L=357]
Description: alkylhydroperoxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-06   25.7   5.3    0.00024   21.1   0.3    3.1  3  CMD       Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.3   1.4e-08   0.00024       3      48 ..      61     105 ..      59     111 .. 0.93
   2 ?   -1.2   0.0      0.12   2.2e+03      54      74 ..     130     150 ..     128     151 .. 0.88
   3 !    5.4   0.1    0.0011        19      19      72 ..     294     346 ..     285     349 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.4e-08
                 HHHHHHHHHHHHCCGSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHH CS
         CMD   3 llraltalreallareggLdpkereLialavsaangceyCvdaHtr 48 
                 l++a+  lre ++  +g+ +++ +e +a+avs  n c yC+  H +
  KIR61873.1  61 LAAAWLLLRETMVV-PGAASRAAKEAVATAVSLGNTCPYCATIHNN 105
                 6899*********9.**************************99955 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.12
                 T--HHHHHHHHHHHHHHHSHH CS
         CMD  54 Gvteeeiaevlaqaaayagwp 74 
                 G+ + e+  ++ +a +++g p
  KIR61873.1 130 GAGAAELEGIVGWAMPAGGNP 150
                 888999**********99976 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0011
                 STS-HHHHHHHHHHHHHHTT-HHHH.HHHHHHHHHTT--HHHHHHHHHHHHHHHS CS
         CMD  19 ggLdpkereLialavsaangceyCv.daHtraAleaGvteeeiaevlaqaaayag 72 
                 g L+  +r ++ la ++a    y v +  +r+++ aG+++  + ev a+ a +a+
  KIR61873.1 294 G-LPEPQRPVARLALLVAFA-SYQVdATVVRGCRLAGLDDRALVEVSAWSAMAAA 346
                 4.888888888888888887.55588888999*****************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2759.27
//
Query:       KIR61874.1  [L=270]
Description: AraC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-22   78.8   0.4    4.2e-22   78.2   0.4    1.3  1  HTH_18    Helix-turn-helix domain
      2e-19   69.2   0.3    1.7e-08   34.3   0.1    2.4  2  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.4   4.6e-26   4.2e-22       2      79 ..      26     102 ..      25     103 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 4.6e-26
                 HHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHH CS
      HTH_18   2 aaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyr 79 
                 a+ + +sr +++rlf++ +g++p ++l+++Rl +A+ lLle t++sv++iA+a+G+++l++F+  f +  g++P++yr
  KIR61874.1  26 ADSAFLSRFYFSRLFRSKTGTSPGRFLTAIRLYKAKNLLLE-TDMSVTDIAYAVGYNSLGTFISRFTRSVGISPARYR 102
                 88999***********************************7.***********************************9 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.1   1.9e-12   1.7e-08       4      42 .]      15      53 ..      13      53 .. 0.95
   2 !   32.7   0.0   6.1e-12   5.4e-08       6      42 .]      66     103 ..      64     103 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.9e-12
                CCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC  4 nlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42
                 ++++l+++ +Ad + +Sr+yFsrlF+++tG +P  ++t
  KIR61874.1 15 RYHEPLSLDAMADSAFLSRFYFSRLFRSKTGTSPGRFLT 53
                6899******************************99985 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 6.1e-12
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                  t+++++diA ++g+ S  +F+ +F + +G++P  yr+
  KIR61874.1  66 ETDMSVTDIAYAVGYnSLGTFISRFTRSVGISPARYRW 103
                 689*********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       162  (0.00903564); expected 358.6 (0.02)
Passed bias filter:                      151  (0.00842211); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2024.51
//
Query:       KIR61875.1  [L=328]
Description: enediyne biosynthesis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-125  418.5   1.1   1.5e-125  418.3   1.1    1.0  1  DUF1702   Protein of unknown function (DUF1702)


Domain annotation for each model (and alignments):
>> DUF1702  Protein of unknown function (DUF1702)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.3   1.1  8.5e-130  1.5e-125       2     319 .]       5     320 ..       4     320 .. 0.98

  Alignments for each domain:
  == domain 1  score: 418.3 bits;  conditional E-value: 8.5e-130
     DUF1702   2 lgalrrrllapslaevtlekrgfeakdeeakerLetigktflaGyeaaiearelaeleerleeveaelrGFayEGaamalavlDaltlgrgkrveella 100
                 ++alrrr+l+p+++e+ +++rgf++k++e+++ Let+g++fl+G + a+ ar+ +++ + l+ ++++++GFayEGaam++a++Dalt+g  +r +e+la
  KIR61875.1   5 IRALRRRVLTPDVKETLVSTRGFHVKNPESRTILETVGSSFLTGLSSAAGARRVTDVDTDLAPLPTRFQGFAYEGAAMGFALVDALTPGAPRRSAEFLA 103
                 689************************************************************************************************ PP

     DUF1702 101 gegkkhiylayvGiGwalArlpralwrkvlkelsesatdpllrwLvlDGYGFhqaYFhtrkyvdeqkvpaelpw..egeaayakrvvdqGiGRalWFvk 197
                 g+g++h+y+ayvGiGwalArlp++lwr+ l      atdpllrwLv DGYGFhqaYFht++yv+ q++ +++pw  eg++aya+r++dqGiGRa WFv+
  KIR61875.1 104 GTGDRHVYMAYVGIGWALARLPKFLWRRAL----AGATDPLLRWLVHDGYGFHQAYFHTAEYVHGQRAVTDFPWppEGPTAYAARAIDQGIGRATWFVA 198
                 ***************************444....5689*************************************99********************** PP

     DUF1702 198 gadvervaeaierfaeerradLwsGvgLAatyAGgvdeeelealrelageyraelaqgaafaakareraglvtehtelaaqvlcglsveeaaeladdtl 296
                 g d++  a++i+rf+++r++dL+sG+gLAatyAGg++++el+ + +++ge+++ +aq++afaa+ar+ragl+ +htela+qv+c +s+++a +++d+  
  KIR61875.1 199 GCDPTVAADLIDRFPAARHEDLYSGAGLAATYAGGCTADELRLFLARSGEHAPFVAQASAFAAQARIRAGLLVPHTELATQVFCRASAADAGRVTDELI 297
                 *************************************************************************************************** PP

     DUF1702 297 eeleedgslpaYeewrqriraef 319
                 ++ ++++ lpaYe+wr++++a+f
  KIR61875.1 298 PAGPDASGLPAYEVWRRAVAARF 320
                 *******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2374.28
//
Query:       KIR61876.1  [L=158]
Description: 4-hydroxybenzoyl-CoA thioesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-08   33.7   0.0    4.9e-08   33.5   0.0    1.1  1  4HBT_2    Thioesterase-like superfamily
     0.0033   17.7   0.0     0.0063   16.8   0.0    1.5  1  4HBT      Thioesterase superfamily


Domain annotation for each model (and alignments):
>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   5.5e-12   4.9e-08       1     122 [.      11     135 ..      11     136 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 5.5e-12
      4HBT_2   1 vrpndvDlnghlnnarylryleearvkflertglksrsiarrgiglilssahvryrrplkfpdrltvefrvididaktliiehrflsnadgkk..aarv 97 
                 v++++++l g ++ + y+r+ +++r+ fl ++  +  +  r    l++ ++++++  +++ +d+l ++ r+ d +++++ +++  ++ +dg++  +ar+
  KIR61876.1  11 VGFEETNLVGNVYYVNYMRWQGRCREMFLRDQAPEVLADIRDDLKLFTLKCECEFFTEITAFDELSIRMRLEDLTQTQIGFAFDYVRLRDGFEelVARG 109
                 56778899999******************755556677777789*******************************************99********** PP

      4HBT_2  98 eerivvmdygk..rskkapvPpellka 122
                 ++ri++m   +  + ++  vP+ l++a
  KIR61876.1 110 RQRIACMRGPNtdT-RPTRVPDTLRAA 135
                 *******9877656.899999888776 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     7e-07    0.0063       2      63 ..      20      88 ..      19     100 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7e-07
                SSB-HHHHHHHHHHHHHHHHHHTTST.......TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSE CS
        4HBT  2 GvvhgGvylallDeaagaalrslggr.......gilvvvvelsidflrpvrlgdeltvearvlrlgrts 63
                G+v+  +y+++  +++ ++lr ++ +       +  ++++  +++f+  ++  del ++ r++ l  t 
  KIR61876.1 20 GNVYYVNYMRWQGRCREMFLRDQAPEvladirdDLKLFTLKCECEFFTEITAFDELSIRMRLEDLTQTQ 88
                89***********************************************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1200.79
//
Query:       KIR61877.1  [L=327]
Description: enediyne biosynthesis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00022   20.8  22.2     0.0041   16.6  22.2    2.1  1  NQR2_RnfD_RnfE  NQR2, RnfD, RnfE family


Domain annotation for each model (and alignments):
>> NQR2_RnfD_RnfE  NQR2, RnfD, RnfE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6  22.2   2.3e-07    0.0041      22     272 ..      38     292 ..      29     297 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.3e-07
  NQR2_RnfD_RnfE  22 liallpallfgvynfglqa.lllilvavvvavlaEvlfaklrkkevkvt..........dlsavvtglLlalilPptlplwvvvigsvfaivv.. 103
                      i + +  +fg+ + g+++  l  ++av++++++E+ f+ +r +  k+t           +++++ + + al++ + l    +++ ++fa++v  
      KIR61877.1  38 AISISVFNIFGYTLLGFEQpWLWPIFAVLTGYATELTFELIRARAKKETprflggggrrVYEFLLPSHITALACNMLLYANDMFLPIAFAVIVgv 132
                     55666667788888888773445588999999999999999988887778899*99998888888888888888888888888888888887722 PP

  NQR2_RnfD_RnfE 104 .vKelf....GGlGqNifNPAlvgrafllisfpaqmtwvaDavsgatpLaalksaslldlflgniagsigetsalalllgglyLlvrkiiswrip 193
                      +K +f     G  +  +NP  +g+ ++l++f +++       s a p +          f++n +     ++ ++++ +g ++ +  + ++ ++
      KIR61877.1 133 tGKYVFqapvYGRMRHYMNPSNFGITMALVCFGSWI-------SIAPPYQ----------FTENANTYFRIMIPIIIVTAGTVINALLTRKVPLI 210
                     246666444434446678888888888888888777.......4566666..........44454455555566667777777777777777777 PP

  NQR2_RnfD_RnfE 194 vsvlatvavlsllfn....llaapplfhllsGglllgafFmatdpvtspitkkGklifglliGlltvliRvfgaypeGvafai 272
                     v+ l+++a+ ++l +    ++  ++l+ ++  +++l + +m+tdp t+p+++  +++fg ++++   ++ +f+ +    +fa+
      KIR61877.1 211 VGWLGGFAIQAFLRAwiwdVALFSALAVMTGVAFVLFTNYMITDPGTTPVKPMNQFMFGSGVAMAYGVLMLFN-VVYTLFFAV 292
                     888888888776666555444455666666668888999*************************999999997.334555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2291.80
//
Query:       KIR61878.1  [L=104]
Description: hypothetical protein TK50_30990 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 845.02
//
Query:       KIR61879.1  [L=517]
Description: pyridine nucleotide-disulfide oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-47  160.3   0.0    7.9e-47  160.0   0.0    1.1  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    6.8e-14   51.8   0.0    1.3e-13   50.8   0.0    1.7  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    2.5e-05   24.7   0.0        3.2    8.4   0.0    3.4  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    0.00017   20.4   0.0       0.16   10.7   0.0    2.2  2  HI0933_like    HI0933-like protein
    0.00022   20.9   0.1       0.36   10.4   0.0    3.2  3  DAO            FAD dependent oxidoreductase
    0.00048   20.3   0.0     0.0026   17.9   0.0    2.3  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00059   19.2   0.0     0.0018   17.6   0.0    1.7  2  FAD_binding_3  FAD binding domain
  ------ inclusion threshold ------
      0.012   14.1   0.0          1    7.7   0.0    2.8  3  FMO-like       Flavin-binding monooxygenase-like
      0.026   13.6   0.0      0.086   11.9   0.0    1.7  1  Lycopene_cycl  Lycopene cyclase protein
      0.078   12.2   0.0        1.1    8.4   0.0    2.2  2  Thi4           Thi4 family
       0.11   13.0   0.0        1.7    9.1   0.0    2.3  2  NAD_binding_7  Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   0.0   4.9e-50   7.9e-47       1     305 []      14     332 ..      14     332 .. 0.92

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 4.9e-50
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkg.nignsiyrypkemtfispsftsekleipdlnaiseets........pafslkee.klsrkealeYlr 88 
                  +IiGaGPaGl+  + l++ag  dyl lE++ + g++++r+p+++++is ++ ++  + p++    +++s        p   +++e  +s++++++Yl 
   KIR61879.1  14 LIIGAGPAGLQLSYYLQQAGS-DYLTLERAaEPGEFFRRFPRHRKLISLNKVHTTSTDPEIRLRWDWNSllhtpadlPFADYSREyFPSADDMVRYLG 110
                  6*******************9.8*******99************************************99999999888888888689********** PP

  Pyr_redox_3  89 evaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhyskvk.efhkyagqkvvViGgknSavDaAlelvr 185
                    a+++ l ++++++Ve v+k+d+gf v++  + ++A+ v++A+G  ++Pn +++ G e +++ y  ++ ++++ya+q+v++ G++nSa+++A  +  
   KIR61879.1 111 DFARHHGLAVRYDTTVELVTKTDDGFLVRAGGRLLHADCVVWAAGW-GRPNIPDVRGIE-HAIGYEDMStDPADYADQRVLILGKGNSAFETASAILG 206
                  *********************************************8.************.99999988669*************************** PP

  Pyr_redox_3 186 kgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvk....tedgkkvev.kddvvlatGykpdlsflkk.. 276
                  + a ++++ ++  + +++++    ++ +    l++++ ++ ++ + +  ++ei+    +y+v+    ++dg++    ++ v+ +tG+  d+s +++  
   KIR61879.1 207 HAAMIHLASPRPLRLAWNTKHPGDVRGHHGAVLDSYQFKT-LHSVLDCVIDEIRPVGDKYEVHltytHADGETAVMeYETVLRCTGFAMDTSAFADnc 303
                  ***********************************99865.99999**************999766655666555515555566*******9988866 PP

  Pyr_redox_3 277 .slfeldedgrpvlteeteetnvpglflaG 305
                   +++   + + p+  +++++  v+gl++aG
   KIR61879.1 304 rPGM-VPSGRLPATRPDWQSVDVDGLYFAG 332
                  4333.447889******************9 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   8.1e-17   1.3e-13       2     290 ..      12     346 ..      11     350 .. 0.74

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 8.1e-17
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE.......TTHCHHHCSHHHHC.HHHHHHHHHHHHH...........................HHHHCHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxx.xxxxxxxxxxxxx...........................xxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve.......legtclnggcllsk.allgvaedaeias...........................evvkkln 64 
                  ++++iG+GpAGl+++ +l+qag + + +e         + ++ ++ l+s  +++ ++ d+ei++                           +    + 
   KIR61879.1  12 RYLIIGAGPAGLQLSYYLQQAGSDYLTLEraaepgeFFRRFPRHRKLISLnKVHTTSTDPEIRLrwdwnsllhtpadlpfadysreyfpsaD---DMV 106
                  789*************************888744453333444444443336666666777777*****************99987774431...333 PP

                  HHCCCCHCCTCEEEEESCEEEEETEEEC......TCEEEEEESEEEE---.EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  65 qgielllgeevvkidpgkkkvklekkke......gdeekiaydklvlAtG.ssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGv 155
                    +  +++++++++ ++  +v+l +k++        ++ + +d +v A G ++p+++++ G  e+++    + +s+++  ++ +  r+++ G G+ + 
   KIR61879.1 107 RYLGDFARHHGLAVRYDT-TVELVTKTDdgflvrAGGRLLHADCVVWAAGwGRPNIPDVRGI-EHAIGY--EDMSTDPADYADQ--RVLILGKGNSAF 198
                  333334446788888888.66665555567999878889999********88**********.999888..5566666666665..5*********** PP

                  HHHHHHHHHT-EEEEEESSSSSS.....TTS-...HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE....EEEEEETTSCE..EEESEEEE-S-EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxx.....xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx..xxxxxxxxxxxxxx RF
  Pyr_redox_2 156 ElAaalaklgkevtlveardrll.....rald...kelsaaleealekeGvevklgtsvkeidgnge....klevvledgee..idadlvvvavGvrp 239
                  E+A+a+   ++ ++   a +r+l      +++   +    a+ +  + +  + +l +++ ei++ g+    +l++++ dge+  +++++v+ ++G+  
   KIR61879.1 199 ETASAILGHAAMIH--LASPRPLrlawnTKHPgdvRGHHGAVLDSYQFKTLHSVLDCVIDEIRPVGDkyevHLTYTHADGETavMEYETVLRCTGFAM 294
                  ****9666666566..55555554478766663345566778888888899999999999***999978655558888888899************** PP

                  S-HHCSHCCT-EEEETTEE.E--TTS.BESSTTEEE-GGGCTECCSS--HHHH CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 240 stelleeklglelderggi.vvdefl.rtnvpgiyaiGDvaggkggpelaqaA 290
                  +t+ + ++    + + g++  + +    + v+g+y +G  a +++ ++ a  A
   KIR61879.1 295 DTSAFADNCRPGMVPSGRLpATRPDWqSVDVDGLYFAGTLA-QDRDFKKASSA 346
                  **9987666666678899864554441567********999.55666666555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0019       3.2       2      35 ..      13      46 ..      12      55 .. 0.88
   2 ?    6.0   0.0     0.011        18      41      73 ..     104     137 ..      98     141 .. 0.88
   3 !    6.2   0.0    0.0093        15       1      29 [.     187     215 ..     187     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0019
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                 +++G+G  gl l  +l++ g++   +er+ ++ 
  KIR61879.1 13 YLIIGAGPAGLQLSYYLQQAGSDYLTLERAAEPG 46
                58********************999999988776 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.E CS
   Pyr_redox  41 easkilqeklekngievllntkveeiegsedg.v 73 
                 ++ ++l +  +++g  v+++t+ve +++++dg +
  KIR61879.1 104 DMVRYLGDFARHHGLAVRYDTTVELVTKTDDGfL 137
                 6788999999********************9944 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0093
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvve 29 
                 +v+++G G+++ E A+a+  +++ +++  
  KIR61879.1 187 RVLILGKGNSAFETASAILGHAAMIHLAS 215
                 79***************999988887765 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   9.5e-05      0.16       3      37 ..      13      47 ..      11      51 .. 0.92
   2 !    7.6   0.0   0.00084       1.4     107     163 ..     101     155 ..      94     162 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.5e-05
                 EEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H CS
  HI0933_like  3 viviGgGaAGlmaAisaakrgkrVlllekakklgr 37
                  ++iG+G+AGl  +  ++++g++ l le+a ++g+
   KIR61879.1 13 YLIIGAGPAGLQLSYYLQQAGSDYLTLERAAEPGE 47
                 68***************************999997 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00084
                  -CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 107 kaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                  +a d+v+ l   +++ g  +r++t+v+ v+k++dg f v++ +++ l+ad +v A G
   KIR61879.1 101 SADDMVRYLGDFARHHGLAVRYDTTVELVTKTDDG-FLVRA-GGRLLHADCVVWAAG 155
                  5799***************************9999.*****.9***********987 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00022      0.36       2      33 ..      13      46 ..      12      48 .. 0.90
   2 !    6.4   0.0    0.0034       5.6     147     205 ..     104     158 ..      94     182 .. 0.75
   3 ?   -0.6   0.1      0.48   7.9e+02      22      22 ..     446     446 ..     411     508 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00022
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                 +iiG+G +Gl   y+L+++g   + le++ ++g
  KIR61879.1 13 YLIIGAGPAGLQLSYYLQQAGsdYLTLERAAEPG 46
                68***************99999999999988887 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0034
                 HHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHH CS
         DAO 147 kltaalaraaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsd 205
                  ++++l + a+ +G  +++ t+v+ + ++d ++  v   + g+  +ad+vV aaG w +
  KIR61879.1 104 DMVRYLGDFARHHGLAVRYDTTVELVTKTD-DGFLV--RAGGRLLHADCVVWAAG-WGR 158
                 5788889999*************9996654.34555..222555456********.644 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.48
                 T CS
         DAO  22 g 22 
                 g
  KIR61879.1 446 G 446
                 1 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.6e-06    0.0026       1      32 [.      15      46 ..      15      60 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.6e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32
                   I+GaG +Gl + y+L++ag d l le++  +G
     KIR61879.1 15 IIGAGPAGLQLSYYLQQAGSDYLTLERAAEPG 46
                   9***************************9998 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.1e-06    0.0018       5      36 ..      14      45 ..      11      51 .. 0.91
   2 ?   -2.0   0.0         1   1.7e+03     105     137 ..     103     135 ..      92     148 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
                   EEE--SHHHHHHHHHHHHTTHHEEEEESSSSS CS
  FAD_binding_3  5 lIVGaGpaGlmlallLseaGvrvvlvekrstt 36
                   lI+GaGpaGl l+  L++aG + + +e+ ++ 
     KIR61879.1 14 LIIGAGPAGLQLSYYLQQAGSDYLTLERAAEP 45
                   8***************************9876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1
                    HHHHHHHHHHHHHHTEEETCSEEEECCEECCCC CS
  FAD_binding_3 105 teleriLvehaeerglqvrfktevesleqdeeg 137
                    +++ r+L + a+ +gl vr +t ve ++++++g
     KIR61879.1 103 DDMVRYLGDFARHHGLAVRYDTTVELVTKTDDG 135
                    567899999*************99999998887 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.027        45      69     117 ..      87     134 ..      81     143 .. 0.85
   2 ?    7.7   0.0   0.00063         1     176     212 ..     178     214 ..     147     224 .. 0.83
   3 ?   -0.6   0.0       0.2   3.3e+02     100     152 ..     239     296 ..     233     308 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.027
    FMO-like  69 sdfplpedypnflh.nsklleylklfakefdllkyiqfkttvcsvkkrpd 117
                 +d p+ +   ++++  + ++ yl  fa++ +l   +++ ttv  v+k+ d
  KIR61879.1  87 ADLPFADYSREYFPsADDMVRYLGDFARHHGLA--VRYDTTVELVTKTDD 134
                 6889988877777515789************95..899*********988 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00063
    FMO-like 176 kepevfkgkrvlviGlGnsggdiavelsrtaeqvlls 212
                  +p+ + ++rvl++G Gns+ + a+ +   a+ + l+
  KIR61879.1 178 TDPADYADQRVLILGKGNSAFETASAILGHAAMIHLA 214
                 46999*******************9998888777665 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.2
    FMO-like 100 lkyiqfkttvcsvkkrpdfs..tsGqwev...vtekegkkesavfdavmvctGhhvnp 152
                 l   qfkt  + ++   d    +  ++ev    t+ +g + +  +++v+ ctG+ + +
  KIR61879.1 239 LDSYQFKTLHSVLDCVIDEIrpVGDKYEVhltYTHADGETAVMEYETVLRCTGFAMDT 296
                 5666777766666655554311345677732236778888888899*******98765 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.3e-05     0.086       3     159 ..      14     174 ..      13     189 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.3e-05
  Lycopene_cycl   3 vviGaGpAglslAarlteakpglkvvlie....aspsll.fpnny.vWsdefedlgaleecvehsWs.gtivylddgkki.llgraYgrvsskrlk 90 
                    ++iGaGpAgl+l   l  +++g   + +e    +++    fp  +   s  +   ++ +  +  +W  +  ++ +++ +  + +r+Y   s +++ 
     KIR61879.1  14 LIIGAGPAGLQLSYYL--QQAGSDYLTLEraaePGEFFRrFPRHRkLISLNKVHTTSTDPEIRLRWDwNSLLHTPADLPFaDYSREYFP-SADDMV 106
                    69**************..77777777776111144444313444455566666666688888888873345677777665144577754.556666 PP

  Lycopene_cycl  91 eellerlv..engvklleakvesveeeeageslvvleggrkirarlvvdarglaslkkarrlglQtfyGve 159
                    + l   ++  ++ + +++ +ve v++ ++     v +ggr ++a +vv a g ++++ +   g+ ++ G e
     KIR61879.1 107 RYLGD-FArhHGLAVRYDTTVELVTKTDD--GFLVRAGGRLLHADCVVWAAGWGRPNIPDVRGIEHAIGYE 174
                    66554.443456678999******99999..88999****************9999988888999999987 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0007       1.1      21      53 ..      14      45 ..       5      47 .. 0.84
   2 ?    1.1   0.0      0.12   1.9e+02       9      36 ..     177     204 ..     170     214 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0007
                EEE--SHHHHHHHHHHHHCTTS-EEEEESSSS- CS
        Thi4 21 vivGaGssGLtaayylakkpdlkvailersvsp 53
                +i+GaG++GL  +yyl ++ +   + ler   p
  KIR61879.1 14 LIIGAGPAGLQLSYYLQQA-GSDYLTLERAAEP 45
                69**************998.7777777776655 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.12
                 HHHHHHHTEEEEEEE--SHHHHHHHHHH CS
        Thi4   9 fedllkyaesDvvivGaGssGLtaayyl 36 
                 ++d  +ya++ v+i G G s   +a  +
  KIR61879.1 177 STDPADYADQRVLILGKGNSAFETASAI 204
                 567889************9998665443 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.3   4.8e+02       7      31 ..      10      34 ..       8      75 .. 0.84
   2 ?    9.1   0.0     0.001       1.7       5      40 ..     183     218 ..     181     308 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.3
  NAD_binding_7  7 gkkvlvvGgGevAarkvrklleaga 31
                     + l++G+G+ +++  + l +ag 
     KIR61879.1 10 HHRYLIIGAGPAGLQLSYYLQQAGS 34
                   5689********9998888887775 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.001
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapev 40 
                      +++vl+ G G+ A + ++ +l   a +++ +p+ 
     KIR61879.1 183 YADQRVLILGKGNSAFETASAILGHAAMIHLASPRP 218
                    6799*****************************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.74u 0.36s 00:00:01.10 Elapsed: 00:00:00.56
# Mc/sec: 2758.06
//
Query:       KIR61880.1  [L=217]
Description: nitroreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-29  101.2   0.0    8.1e-29  100.8   0.0    1.1  1  Nitroreductase  Nitroreductase family
    7.2e-09   35.5   0.1     0.0013   18.4   0.0    3.1  3  TM1586_NiRdase  Putative TM nitroreductase


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0     9e-33   8.1e-29       2     170 .]      31     195 ..      30     195 .. 0.91

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 9e-33
                     HH--B---B-S----HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHH..HHTT-SS-GGGGGGHHHHHHHHHHHHSSEEE CS
  Nitroreductase   2 rkRrSiRkFddepvpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllk..aeaqaelaqryrkeelklkaqkalagapvli 94 
                     + RrS+R+F+depvp+e++e+ ++aa++aPs+ nlqpwrfvvv+d + r++l+eaa ++  +   +++ +++ + +    ++ ++++l++apv+i
      KIR61880.1  31 AARRSVRHFSDEPVPLEVVEEAVRAAATAPSGANLQPWRFVVVTDADRRRRLREAAEAEEIEfyTRRASQEWLDAVAPMGTDWQKPFLETAPVVI 125
                     68***********************************************9999998766544115677777888887799*************** PP

                     EE---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEEE- CS
  Nitroreductase  95 vivatldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliavGy 170
                     v+     + ++ ++     y   ++g+a+  l++a++  Gl++   +   ++   ++++ + p ee+  ++++vGy
      KIR61880.1 126 VV----FEVHQGPQTPKPYYVKESVGIAVGVLITALHLSGLATLTHTPSPMRF--LNEICDRPAEERACLVMPVGY 195
                     **....88888888888888999******************************..********99**********9 PP

>> TM1586_NiRdase  Putative TM nitroreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00016       1.4       5      27 ..      29      51 ..      25      52 .. 0.88
   2 !   18.4   0.0   1.4e-07    0.0013     160     187 ..      49      76 ..      46      94 .. 0.82
   3 !    7.5   0.0   0.00031       2.8     115     150 ..     178     215 ..     143     217 .] 0.87

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00016
                    HHHH--B---B--S---HHHHHH CS
  TM1586_NiRdase  5 aiekRhsvRkYkdealeeellee 27
                     +  R+svR+++de+++ e++ee
      KIR61880.1 29 RMAARRSVRHFSDEPVPLEVVEE 51
                    6999*************999875 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.4e-07
                     HHHHHHHHHTS--GGG----EEE.E-SS CS
  TM1586_NiRdase 160 fkeileaarlAPsAlNqqpwrfelkddd 187
                     ++e+++aa  APs  N qpwrf +++d 
      KIR61880.1  49 VEEAVRAAATAPSGANLQPWRFVVVTDA 76 
                     6899*******************98875 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.00031
                     ........T-S-EEEEE-BS----...-----HHHHBS CS
  TM1586_NiRdase 115 kvelkkgeklvivIalGyaktklv..eakrkpleelce 150
                      ++ + +e+ ++v+ +Gy+++ ++  e  rk+l+e+++
      KIR61880.1 178 ICDRPAEERACLVMPVGYPAEGVTvpELTRKSLSEVMV 215
                     4789999***************9889999****99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1579.07
//
Query:       KIR61881.1  [L=372]
Description: glutamate--cysteine ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-48  164.2   2.6    5.9e-48  163.7   2.6    1.2  1  GCS2      Glutamate-cysteine ligase family 2(GCS2)


Domain annotation for each model (and alignments):
>> GCS2  Glutamate-cysteine ligase family 2(GCS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.7   2.6   3.3e-52   5.9e-48       1     291 []      14     293 ..      14     293 .. 0.93

  Alignments for each domain:
  == domain 1  score: 163.7 bits;  conditional E-value: 3.3e-52
                 EEEEEEEEEEETTTTEE-S-HHHHHCCCTTT-S.SSEEEE-SSTTEEEEE--SBSSHHHHHHHHHHHHHHHHHHHHHTT-EEE--SB-SS--------- CS
        GCS2   1 lgvEeeflvvdlatgdlrgwseiledeaiiglseggsvvkelpegqvElstapleslaeaaeeisadleelrsvadelGlellglGthPfalrsedevt 99 
                 +gvEeeflvvd+at+       ++e  a+   s g++v  e++  q+E+ t+ + +l e+ +++++++++++  a+ +Gl+++++Gt P a   + ++t
  KIR61881.1  14 FGVEEEFLVVDAATRAPV--PRAAEVVAAASASLGERVSGEITTLQLETRTHACGTLGELTDQLGEARKVVADCARAAGLRVVAAGTAPVAGAVPPPMT 110
                 59**************99..344444555666688**************************************************************** PP

                 ------THHHHHGG..G.G-S--B-EEEEEEE-SSHHHHH.HHHHHHHTTHHHHHHHH--B-EETTEE-S-SB-GGGCCTTSTT-CS----SSHHH.HH CS
        GCS2 100 pkaryrrmleymdrvGvlgrqmmvaglhvqvnidssseedVevlrlvrallPvllAlsAnSPfleGrdtgyaStRariftqtpqagelplafedgaafe 198
                   +r+ r +e +     l  +  ++ lhv+v+ ++  +++V v + +r++lP+ll l AnSP+++ rd+gyaS R  +++++p  +++p +f++  ++ 
  KIR61881.1 111 VGPRQSRGTETFRG---LHDELALCALHVHVEMPD-RQRAVLVGNHLRPYLPLLLTLTANSPYWDDRDSGYASWRTTVWGRWPV-AGPPPVFDSAEHYD 204
                 ************99...599999************.99999*******************************************.777777888889** PP

                 HHHHHHTTSTT-SSGG.G--BSEEEETTTT.EEEEEEEE--...SSHHHHHHHHHHHHHHHHHHHHH------GGGGTT.HHHHHHHHHHHGG CS
        GCS2 199 ryaryaldvpvidvrrfrlwldirpsslpgttlelrihdttlfPevrlrallearlldaqpadrldalpaavlvallddeaeenawdavrsgl 291
                 + + ++ld++++ +r  ++++d+rps++++ tle+r+ d+ l  e ++r  +++r+l a    ++da + a  va +++    ++w+a+r+gl
  KIR61881.1 205 EVVGRLLDAGALVDRA-TIFWDVRPSERHP-TLEVRVADSALTAEDAARYAALVRALVAHLSAAVDAGEPAPHVAGELL--RVAYWRAARDGL 293
                 *************999.*************.***********99***********************999999999988..446******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2583.48
//
Query:       KIR61882.1  [L=181]
Description: carboxymuconolactone decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-11   43.6   5.8    2.3e-06   27.6   0.5    2.1  2  CMD       Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.5   1.3e-10   2.3e-06       1      51 [.      24      75 ..      24      78 .. 0.94
   2 !   18.8   0.7   6.9e-08    0.0012      20      79 ..      96     155 ..      84     157 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.3e-10
                HHHHHHHHHHHHHHCC.GSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
         CMD  1 pellraltalrealla.reggLdpkereLialavsaangceyCvdaHtraAl 51
                pe++ al+al+eall   ++ L++ ereLia  vs +n c +C ++H + A 
  KIR61882.1 24 PETAVALNALAEALLHaPHPTLSAGERELIAAYVSGLNECTFCCSSHSAFAA 75
                788899*****************************************99875 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 6.9e-08
                 TS-HHHHHHHHHHHHHHTT-HHHH.HHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHH CS
         CMD  20 gLdpkereLialavsaangceyCv.daHtraAleaGvteeeiaevlaqaaayagwpaaraA 79 
                 ++++k+r L+ +a+++  g    v +a +  A+  G+t+ ei +++ +aaa + +++ ++ 
  KIR61882.1  96 EVSAKLRGLLRIAAAVQAGGRT-VsAALVDSARAEGATDLEIHDTVLIAAAFCMFNRYVDG 155
                 5899******************.66***************************998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1353.42
//
Query:       KIR61883.1  [L=310]
Description: hypothetical protein TK50_31020 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2222.05
//
Query:       KIR61884.1  [L=281]
Description: hypothetical protein TK50_31025 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-09   38.2  11.5    2.1e-09   38.2  11.5    1.8  2  MDMPI_N   Mycothiol maleylpyruvate isomerase N-terminal domai
    0.00058   20.4   3.2     0.0025   18.3   3.2    1.9  1  DinB_2    DinB superfamily
     0.0029   18.1   0.0     0.0058   17.1   0.0    1.4  1  SCP2      SCP-2 sterol transfer family
  ------ inclusion threshold ------
      0.063   13.1   0.1       0.13   12.0   0.1    1.6  1  SRA1      Steroid receptor RNA activator (SRA1)


Domain annotation for each model (and alignments):
>> MDMPI_N  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2  11.5   4.6e-13   2.1e-09       9     141 .]      20     155 ..      17     155 .. 0.89
   2 ?   -0.8   0.1       0.5   2.2e+03      71     121 ..     213     267 ..     173     277 .. 0.62

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 4.6e-13
     MDMPI_N   9 aalvagLtdeqwaapspcpGWtvadlvaHlarsaralaaalaaegaesalardaaaalvtaad........aeavdlaaslapeallaafraavtrlaa 99 
                  +l++ ++d+  ++p   + Wtvad +aHl++ a   +a++++   ++ l+++ + +l+++          ae  +   ++  + l++++ra v+++++
  KIR61884.1  20 GRLLDLVDDAPPDRPA-TAHWTVADTMAHLCGVAAMGLALVRG--GPPDLPVPDLLELRRRTTvdtisvmnAEVLRHFTERRLPVLADRLRADVEEVLR 115
                 6899999999999998.899********************998..56777777777777776689999999**************************** PP

     MDMPI_N 100 alaalppdaiadrlgipggprslgeflrtrlvEavvHglDla 141
                 a++++ p++ + +l  +g + ++   l+  l E+ +H++D+a
  KIR61884.1 116 AVDEAGPEHEVSWL--GGARLPVTGLLAHLLNELNLHAWDIA 155
                 **************..666666666***************97 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.5
     MDMPI_N  71 d....aeavdlaaslapeallaafraavtrlaaalaalppdaiadrlgipggprs 121
                      + +v  a++ + ++++  f+ av  l    +   p+a  +r  + gg+r+
  KIR61884.1 213 TmalaDGRVTVAPTESRPDVRLSFDPAVFTLMLFGRVSRPRAVLARKLWVGGRRP 267
                 0444477777777888888888887777777655444444444444455555555 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   3.2   5.6e-07    0.0025      14     126 ..      23     152 ..      12     154 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.6e-07
      DinB_2  14 edlteeelnrqpspgkwsiawllaHlgnveelllerlrgeeap.........rpgldpltp.................psaaealaylaevrarllall 86 
                  dl ++    +p++ +w++a ++aHl  v  + l+ +rg +++         r                          + + +    +++ra + ++l
  KIR61884.1  23 LDLVDDAPPDRPATAHWTVADTMAHLCGVAAMGLALVRGGPPDlpvpdllelR-------RrttvdtisvmnaevlrhFTERRLPVLADRLRADVEEVL 114
                 344455555678999***********************977665555544441.......033345556655555554233333344556666666666 PP

      DinB_2  87 ealtdadldrpltaphpglgkltlgdvllfvlqHeqhHle 126
                 +a ++a  +  +++   g ++l++  +l+++l++++ H  
  KIR61884.1 115 RAVDEAGPEHEVSWL--GGARLPVTGLLAHLLNELNLHAW 152
                 666665556777777..*********************76 PP

>> SCP2  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.3e-06    0.0058      34      88 ..     211     264 ..     197     266 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.3e-06
                 EEEEEETTSTEEESSCTTBS-SEEEEEEHHHHHHHHCTSS-HHHHHHTTSSEEEC CS
        SCP2  34 sltldlkegqldvaakdegkadvtlslsledllelaegklnpqkafmqgkLkieG 88 
                 ++t+ l +g+++va + e+++dv ls +++ +  ++ g++   +a +++kL + G
  KIR61884.1 211 EVTMALADGRVTVA-PTESRPDVRLSFDPAVFTLMLFGRVSRPRAVLARKLWVGG 264
                 57888999999996.5688*******************************97755 PP

>> SRA1  Steroid receptor RNA activator (SRA1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1     3e-05      0.13      74     127 ..     127     182 ..      76     184 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3e-05
        SRA1  74 sWksGkLslpvrkrmevLsqelqskrWdaaDdihrsLmvDhvte...vsqWmvGvkr 127
                 sW +G   lpv   ++ L +el+ + Wd a  + r  +vD       v  +mvG+ r
  KIR61884.1 127 SWLGGA-RLPVTGLLAHLLNELNLHAWDIARAVGRRWVVDPADAalfVDLFMVGMTR 182
                 677664.69******************************976533338999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2129.29
//
Query:       KIR61885.1  [L=394]
Description: acyl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-22   79.2   1.5    3.2e-22   79.2   1.5    2.3  3  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
    8.4e-08   32.9   0.2      2e-07   31.7   0.2    1.6  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
     0.0017   18.6   0.0     0.0031   17.7   0.0    1.4  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.52   3.1e+03      11      44 ..      20      55 ..      17      57 .. 0.70
   2 ?   -2.3   0.5      0.85   5.1e+03       4      22 ..      68      86 ..      66      88 .. 0.77
   3 !   79.2   1.5   5.4e-26   3.2e-22       6     132 ..     244     371 ..     239     373 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.52
                   HHHHHHHHHHHHHHHHC..TTT-------HHHHHHH CS
  Acyl-CoA_dh_2 11 Araalaefvelarervr..assgekladdpatqlal 44
                   A+ +l e+v++ +e  r   ++ e++a++ ++ +++
     KIR61885.1 20 AEPVLREHVAWSEENRRlhEATVEAMAEAGIFRMRV 55
                   566777888887743333488888888888887776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.85
                   HHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2  4 aavalGaAraalaefvela 22
                   + v +GaA + +++ v+++
     KIR61885.1 68 TLVEVGAALGRIDASVAWV 86
                   5678899999999988887 PP

  == domain 3  score: 79.2 bits;  conditional E-value: 5.4e-26
                    HHHHHHHHHHHHHHHHHHHHHC.TTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   6 valGaAraalaefvelarervr.assgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaavda 100
                    + +G+A+aa + f ++  +r+  +++  ++a++p t+l+++ aa+++d+A  + +r a+ +  +a  g++ tve+r + r+++  a++la +++d 
     KIR61885.1 244 MLVGIAKAAWDTFFDRLPDRKIiYTDYPSQAEAPLTHLRVGAAAHKIDQAMFHARRIAEVVDHKAFSGEAWTVEERVRVRADQGEAARLAKEVADT 339
                    579***************99987888899*********************9999999999888899****************************** PP

                    HHHHCGGGGGBTT-HHHHHHHHHHHHCTSGGG CS
  Acyl-CoA_dh_2 101 lfeaaGgsalrkesplqRlwRDahaaaaHaal 132
                       a+Gg++++++ p+qR+ RD++ aa H ++
     KIR61885.1 340 FQMASGGTSIYTDVPIQRIVRDITSAALHGLV 371
                    ****************************9765 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.2   3.3e-11     2e-07      10      89 ..      16      93 ..       7     108 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 3.3e-11
                   HHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTT CS
  Acyl-CoA_dh_N 10 tvrefaeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslv 89
                   +v++ ae  l++h+a  +e+++  +++++++ae+G++ + vp+ ygG ++d  + + v   l+r da++a + +v + + 
     KIR61885.1 16 RVAK-AEPVLREHVAWSEENRRLHEATVEAMAEAGIFRMRVPKRYGGYECDGATLVEVGAALGRIDASVAWVAMV-NWIP 93
                   4444.3445555444444555888889*****************************************9986555.4454 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.2e-07    0.0031      21      95 ..     127     198 ..     114     200 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.2e-07
                    EEETT.EEEEEEEEEEEETTTT-SEEEEEEE.TS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE CS
  Acyl-CoA_dh_M  21 aerdggeyvlnGeKiwitnaaiatlalvlar.tekpdrarglslflvprdapgvsvrrieeklGlrglptgelvfe 95 
                    ++  +g+y lnG+  ++++a++a+++   a    + + + +  + +vp  ++++++ + ++++Glrg  +   v +
     KIR61885.1 127 VPV-EGGYLLNGRWPFVSGAHHAHWMEAAAViLRDGA-EPEPVMTMVP--MSDMELVDDWHTTGLRGSGSITTVAT 198
                    444.458*******************55555422333.556669****..556677777799****9887666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2753.60
//
Query:       KIR61886.1  [L=524]
Description: glutamate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-74  250.3   0.0      4e-74  250.0   0.0    1.1  1  Glu_synthase  Conserved region in glutamate synthase


Domain annotation for each model (and alignments):
>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.0   0.0   2.2e-78     4e-74      66     367 ..     143     458 ..     132     459 .. 0.92

  Alignments for each domain:
  == domain 1  score: 250.0 bits;  conditional E-value: 2.2e-78
                   TTEE---B-TTTS-HHHHHHHHHHHHHHT-B-EETTS---GGGGS-----SEEEE-TT-TT--...........HHHHHH-..SEEEEE---TTSTT CS
  Glu_synthase  66 kriltsamSyGalseeahealakamnrlgtksntGEGGedeerlktakdvaikQvasgrFGvt...........eeyLnna..kaleikiaQGakpg 149
                   + + +s+mS+G+ls +a+ al+ ++  +g   ntGEGG+++++++ ++ v   Q++++ FG +           ++ + +a  +ale+k++QGakp 
    KIR61886.1 143 SVVNISGMSFGSLSGNAVAALNRGAALAGCLHNTGEGGLSPYHRRGGELV--FQLGTAYFGCRdergrfdlarlKDLVASApvRALEVKLSQGAKPS 237
                   67899**************************************9988765..******************999877777654479************ PP

                   S--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STT..HHHHHHH..HHHTT-SEEEEE-TT---SS CS
  Glu_synthase 150 eGgqlpgeKvseeiakiRkikpgvdliSPaphhdiysiedlaqliedLkevnkeakvsvKlvaeag..vetiaag..vakanadiilidGleGGTGA 242
                    Gg lpg+Kvs+eia++R++++g d +SP++h ++ + + l + +e L   +   +v++K + +       +a+    +  + d++++dG eGGTGA
    KIR61886.1 238 LGGLLPGAKVSAEIAATRGVPQGRDCVSPSRHAEFADCDSLLDWVELLAAET-GLPVGIKSAVGDLgfWAELATLmrDTGRGIDFVTVDGGEGGTGA 333
                   *********************************************9887666.9******87765312223333223456789************** PP

                   EEHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHHHTT--S---GGGT--TTSSS---HHHH..TT CS
  Glu_synthase 243 spkssikhaGlPlelalaevdqtlkeeglrdrvsliadGglktgadvvkalalGAdavgigtaalialgCimarvChtntCpvGvatqdpeLrkrlk 339
                   +p  +++ + lP++ + ++v ++  e gl ++v+   +G+l  +++ v+a alG d v++g+ a++a+gCi+a++Cht+tCp+Gvatq+p L + l+
    KIR61886.1 334 APLIFTDSVSLPFQQGFSRVYRVFAERGLHEQVVFVGAGKLGLPDNAVVAFALGCDMVNVGREAMLAIGCIQAQKCHTDTCPTGVATQHPWLARGLD 430
                   ************************************************************************************************* PP

                   ----HHHHHHHHHHHHHHHHHHHHHHT- CS
  Glu_synthase 340 veekaervvnyikalaeevrellaalgi 367
                    ++k  r +ny+++l++++ +++ a g+
    KIR61886.1 431 PARKSVRAANYLRTLRRDLVKVAEACGV 458
                   *********************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 4174.08
//
Query:       KIR61887.1  [L=265]
Description: molybdate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-45  153.1  13.9    1.2e-44  152.8  13.9    1.1  1  SBP_bac_11      Bacterial extracellular solute-binding protei
    1.8e-18   67.6   0.6    2.3e-17   63.9   0.6    2.0  1  SBP_bac_1       Bacterial extracellular solute-binding protei
      3e-05   23.9   4.8    8.1e-05   22.4   1.6    2.1  2  PBP_like_2      PBP superfamily domain
    4.4e-05   23.4   0.1     0.0073   16.1   0.0    2.1  2  SBP_bac_8       Bacterial extracellular solute-binding protei
    7.3e-05   22.0   0.2     0.0011   18.1   0.2    2.3  1  PBP_like        PBP superfamily domain
    0.00015   21.2   2.8    0.00026   20.4   2.8    1.3  1  LysR_substrate  LysR substrate binding domain
     0.0014   18.3   0.2     0.0018   17.9   0.2    1.2  1  OpuAC           Substrate binding domain of ABC-type glycine 
     0.0081   15.6   0.0      0.012   15.1   0.0    1.3  1  SBP_bac_6       Bacterial extracellular solute-binding protei
  ------ inclusion threshold ------
        9.1    6.4  16.7         17    5.5  16.7    1.5  1  HDPD            Bacteriophage lambda head decoration protein 


Domain annotation for each model (and alignments):
>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.8  13.9   5.8e-48   1.2e-44       1     230 []      43     261 ..      43     261 .. 0.96

  Alignments for each domain:
  == domain 1  score: 152.8 bits;  conditional E-value: 5.8e-48
                 .EEEE-SSTHHHHHHHHHHH.HHHH---EEEEESSHHHHHHHHHHH..-SEEEESSH.HHHHHHHHGGGGGGG-EEEEEEEEEEEESTT-TT---SHHH CS
  SBP_bac_11   1 ltvaaagslaaalrelaaaF.eahtgvkvevsaggsgklarqiadgarpDvwipassawlellaaaglvqaesavplassplviavpkgnpkkikgwad 98 
                 +tv+aa+sl++ + +l ++F +ah+g +v++s++gs++la q+ +ga++Dv+++as+a ++ + +ag ++ ++++++a+++lv+avpkgnp ++ ++ad
  KIR61887.1  43 VTVLAAASLTESFHRLGDEFeAAHPGTTVTFSFAGSSALATQVNQGAPADVFAAASPATMRPVTDAGNAA-GEPTTFARNQLVVAVPKGNPGGVGTLAD 140
                 69******************666**********************************************9.**************************** PP

                 HHHSS--EEEE--T-TTTTHH.HHHHGGG--HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SEEEEEHHHHH..HSTTSSEEEE--TTT--...EEEEE CS
  SBP_bac_11  99 LlkpglklavadPttspsGlaalalleaagaqellkalekkvvklgessrqlltaveageadagivyeseakaaengdkleavylpeglnldpldypaa 197
                 L++pg+k+a+   ++ p G aa ++l+aag       ++   v+l+ ++  +l+ v+ ge+da++vy+++a a  ++  ++av+ pe+  +   dyp++
  KIR61887.1 141 LTRPGVKVALCA-EQVPCGAAARTALDAAG-------VALTPVTLESDVKGALAKVRLGEVDAALVYRTDATA--AASQVDAVEFPESARA-VNDYPIV 228
                 ***********8.899**************.......666788899999**********************94..799***********97.56***** PP

                 EEE-TT--HHHHHHHHHTTSHHHHHHHHHTT-B CS
  SBP_bac_11 198 vlkkaakreaAraFlafLrspeaqailrkyGfr 230
                 vl++a++++aAraF+a+++s+ ++a+l+++Gf+
  KIR61887.1 229 VLRQAGNPTAARAFVAYVLSDRGRAALTAAGFQ 261
                 ********************************6 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.6   1.2e-20   2.3e-17       1     313 [.      48     251 ..      48     253 .. 0.89

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 1.2e-20
                 EGSHHHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEE.CGGHHHHHHHT.TSBECCHHHHHHTTECTTCCTEEEEHHHH CS
   SBP_bac_1   1 agsltegaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviav.dndwiarlaka.glllpldpyvkaylapgvkdaadklsssv 97 
                 a+slte  ++  l  ++fe++hpg +V++ + gs++la+    ++ +G+ paDv+a  +++++++  +a +++ + ++++ ++l+  v+++        
  KIR61887.1  48 AASLTE--SFHRLG-DEFEAAHPGTTVTFSFAGSSALAT----QVNQGA-PADVFAAaSPATMRPVTDAgNAAGEPTTFARNQLVVAVPKGNPG----- 133
                 589999..******.************************....******.88*****9999999999999999999999999998887754333..... PP

                 THHHHCEEEESEEEEEEEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSH CS
   SBP_bac_1  98 lpkildskvlyvPlyaargliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvta 196
                      +                              t  +l+++++k+    +  + ga+  +a++ a++                             
  KIR61887.1 134 ---GVG------------------------------TLADLTRPGVKVALCAEQVPCGAAARTALDAAGVA---------------------------- 171
                 ...222..............................999****************7777777777777764............................ PP

                 HHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTC CS
   SBP_bac_1 197 atylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgs 295
                                    ++++++d+  ala +  Ge+++a+v+ ++a aa+++  +v f+++++ +                    + y+++++ ++
  KIR61887.1 172 -----------------LTPVTLESDVKGALAKVRLGEVDAALVYRTDATAAASQVDAVEFPESARAV--------------------NDYPIVVLRQA 233
                 .................599****************************99999999999999999999....................88********* PP

                 STHHHHHHHHHHHTSHHH CS
   SBP_bac_1 296 knpeaAkkFldfllspea 313
                  np aA++F++++ls+ +
  KIR61887.1 234 GNPTAARAFVAYVLSDRG 251
                 ***************976 PP

>> PBP_like_2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   1.6   4.1e-08   8.1e-05       3     105 ..      34     133 ..      32     152 .. 0.85
   2 ?    2.7   0.1     0.043        85     245     282 .]     223     250 ..     153     250 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 4.1e-08
  PBP_like_2   3 aaeatsvgeifgaGsttpapalrkladafekaapgakvnyastGSgagikalrngd.vdfagsdrplteseia.agwaangaggliqvpvaigaialvv 99 
                 +++a ++g +++ ++ ++ + +  l d fe a+pg++v+ +  GS+a   ++ +g+ +d+ ++ +p+t + +  ag aa +      + +a+++++++v
  KIR61887.1  34 ESGAEVRGPVTVLAAASLTESFHRLGDEFEAAHPGTTVTFSFAGSSALATQVNQGApADVFAAASPATMRPVTdAGNAAGE-----PTTFARNQLVVAV 127
                 678888999999999999999999*********************************999999999999988656555555.....799********** PP

  PBP_like_2 100 nkdnpl 105
                 +k np 
  KIR61887.1 128 PKGNPG 133
                 *99664 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.043
  PBP_like_2 245 gayPlsrftyiivyqpyayhgnnaalakaFldyllsde 282
                  +yP+     ++ +q++     n ++a+aF++y+lsd+
  KIR61887.1 223 NDYPI-----VVLRQAG-----NPTAARAFVAYVLSDR 250
                 34444.....4445533.....3899*********985 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0059        12       4      43 ..      60      94 ..      57     112 .. 0.76
   2 !   16.1   0.0   3.7e-06    0.0073     181     261 ..     184     260 ..     147     265 .] 0.84

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0059
                HHHHHH-.TEEEEEEE--SSSHHHHHHHHHHTT---SEE.E CS
   SBP_bac_8  4 kefekkt.gvkvnvvtaasndleqklkaalaagtapdidvv 43
                +efe+++ g +v+++ a+s  l+++++  ++a      dv+
  KIR61887.1 60 DEFEAAHpGTTVTFSFAGSSALATQVNQGAPA------DVF 94
                89************999887777766665443......344 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 3.7e-06
                 -SSTTTTTSBSEEEE-TTHHHHHH-TTTSEEEE.--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH-- CS
   SBP_bac_8 181 avsefanGevaftingswdiaaaqkagkklgai.vpkqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektgy 261
                 a ++++ Gev +++ ++ d++aa+    ++ a+ +p ++ +++  +++v+ +a+n++ aA +F+ +++s+ + aal    g+
  KIR61887.1 184 ALAKVRLGEVDAALVYRTDATAAAS---QVDAVeFPESARAVNDYPIVVLRQAGNPT-AARAFVAYVLSDRGRAALTA-AGF 260
                 5677888999999999999999888...6777779**********************.6**************99877.444 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.2   5.6e-07    0.0011       2     189 ..      60     243 ..      59     246 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 5.6e-07
                 HHHHHH-TTCEEEEEES-HHHHHHHHHTTS-SEEEESS---CCCHHCCCCCEEEEEEEEEEE.E-CC-HCHCCCCHCCHHHS--BGGGC-S-B-EEEEE CS
    PBP_like   2 eelaeknpgvrvavanvGsggGlkalrageadiagshlldketeeynapalrkaldgievvl.vnlarreqglvvakgnpkkitnwkdladaplrlvnR 99 
                 +e+++++pg++v++++ Gs++  +++++g    a +++++  + +   p +  a ++  + +  ++ar +  + v kgnp ++ +++dl+++++ ++  
  KIR61887.1  60 DEFEAAHPGTTVTFSFAGSSALATQVNQG----APADVFAAASPATMRPVTD-AGNA--AGEpTTFARNQLVVAVPKGNPGGVGTLADLTRPGVKVALC 151
                 69*****************9999999999....8899999888888888665.3333..344288888888899*****************99998765 PP

                 -T....TSHHHHHHHHHHC-CEECTE-SSTTSEEESSHHHHHCCHCCETTCCECCC....GG-HCCCCCCECTTCE-..EEEEEEEECTCCCSHHHHHH CS
    PBP_like 100 et....GSGtrdlfdellkkegiskssikgyaqearshlavaaaVaagradvgvgi....eavaeelkgldfvplae..erydlvvrkealddpevqaf 188
                 ++    G+ +r  +d +         +++ ++  + + + + a V+ g++d+++       a+a +++ ++f + a+   +y +vv ++a +  + +af
  KIR61887.1 152 AEqvpcGAAARTALDAAG-------VALTPVTL-ESDVKGALAKVRLGEVDAALVYrtdaTAAASQVDAVEFPESARavNDYPIVVLRQAGNPTAARAF 242
                 441222444444444444.......22344432.33334444556666666666553333344445555555555555556666666666666666666 PP

                 H CS
    PBP_like 189 l 189
                 +
  KIR61887.1 243 V 243
                 5 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   2.8   1.3e-07   0.00026       3     205 ..      38     247 ..      36     250 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.3e-07
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTS.SSEEEEESSS........CCTTEEEEEEEEEEEEEEEETTS CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaege.lDlairagpp........edsglearpLaeeplvlvaspdh 88 
                     + rg +++ a  +l++++  +l  +f a++P+ ++  + + s++l+ ++++g  +D+  +a p           +  e + +a+++lv++++++ 
      KIR61887.1  38 EVRGPVTVLAAASLTESF-HRLGDEFEAAHPGTTVTFSFAGSSALATQVNQGApADVFAAASPAtmrpvtdaGNAAGEPTTFARNQLVVAVPKGN 131
                     678888888888876665.89999****************************768999999999*****8775555577899************9 PP

                     GGGGSSSE.CGGGGCT..SEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE CS
  LysR_substrate  89 pLargepv.sledLad..eplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp 180
                     p      v +l+dL +   +  l  e+ ++  +++ al++ag++++++   +++  +la v+ G   a l   +  +  a+ ++ a+++pe +  
      KIR61887.1 132 P----GGVgTLADLTRpgVKVALCAEQVPCGAAARTALDAAGVALTPVTLESDVKGALAKVRLGEVDAALVYRTD-ATAAASQVDAVEFPESARA 221
                     7....44559****999999999999*******************999999999999999999998666665553.3348889********9888 PP

                     .EEEEEEEETTCCCHHHHHHHHHHHH CS
  LysR_substrate 181 .relylvyrkgrelspavrafidflr 205
                       ++ +v+ ++   + a+raf+++++
      KIR61887.1 222 vNDYPIVVLRQAGNPTAARAFVAYVL 247
                     89999999999999********9886 PP

>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   8.9e-07    0.0018      80     210 ..     115     232 ..      61     250 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 8.9e-07
                 EEESEEECEEEEEEHHHHHHHTTTBHHHHCTHHGGTEEEEEHHCCHSTTSHHCCHHHHHHHHHHT-TTCEEEGSCEEEEHHHHHHHHHTTCSSEEEEET CS
       OpuAC  80 gplgagnteglavpkyvaekygiksisDLkkpaedlelgakgeflgrpdgwgcekvtegllkaYgldkvelvegseaamdaelyaaykrgepvvvyawt 178
                  ++ a n+  +avpk      g+ +++DL +p +        ++  ++   +c  +++++l+a g+    l + + +     + a ++ ge++++ ++ 
  KIR61887.1 115 PTTFARNQLVVAVPKGNPG--GVGTLADLTRPGV--------KVALCAEQVPCGAAARTALDAAGVA---LTPVTLESDVKGALAKVRLGEVDAALVYR 200
                 3667889999999999966..********99999........5666666666666677********2...4366666666788999************* PP

                 TSTHHHHTTEEE-B-TTSTS-SSEEEEEEEEH CS
       OpuAC 179 PdwaikkydlvvLedpkglfppaynvvpvvrk 210
                 +d++ ++ ++  +e p+++   +++  +v+r+
  KIR61887.1 201 TDATAAASQVDAVEFPESARAVNDYPIVVLRQ 232
                 **********9999998888877655555554 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     6e-06     0.012     135     217 ..     184     262 ..     171     265 .] 0.74

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6e-06
   SBP_bac_6 135 aagslesgepavsvvpyffadilpekkkgknlkvvwPedGalvspifmlvkkgkkkelakafidfllspevqailakaggvfP 217
                 a++++  ge  v+ +  + +d+ ++ ++++ +++         +pi++l ++g ++  a+af+ + ls+ ++a+l++ag+  P
  KIR61887.1 184 ALAKVRLGE--VDAALVYRTDATAAASQVDAVEFPESARAVNDYPIVVLRQAG-NPTAARAFVAYVLSDRGRAALTAAGF-QP 262
                 566667777..666666777777777744444444444444446999999999.************************98.44 PP

>> HDPD  Bacteriophage lambda head decoration protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  16.7    0.0087        17      45     106 ..     100     211 ..      33     216 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0087
        HDPD  45 a...................................................gklvpldpaatdGsqtAaaillypvdataadveavaiardaevngaa 92 
                 a                                                   ++ vp+ +aa +   +Aa+++l pv+  +  + a+a +r +ev  aa
  KIR61887.1 100 AtmrpvtdagnaagepttfarnqlvvavpkgnpggvgtladltrpgvkvalcAEQVPCGAAARTAL-DAAGVALTPVTLESDVKGALAKVRLGEVD-AA 196
                 0555555555555555555566666666666666666666666666777788********988888.************99899999********6.78 PP

        HDPD  93 Lvwpasvtd.aqkaa 106
                 Lv+ +++t+ a + +
  KIR61887.1 197 LVYRTDATAaASQVD 211
                 999999999555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1865.47
//
Query:       KIR61888.1  [L=273]
Description: molybdate ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-21   76.8  15.7    1.7e-21   76.8  15.7    1.9  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2     0.024   4.3e+02     104     132 ..      52      80 ..      47      81 .. 0.88
   2 !   76.8  15.7   9.5e-26   1.7e-21       1     182 [.      80     269 ..      80     272 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.024
  BPD_transp_1 104 Pnalppiitglilafggllggavlleflg 132
                   ++a+p ++t l+l++  + g+++l + lg
    KIR61888.1  52 RLAAPGVLTALRLSLLTATGATLLCLALG 80 
                   7899***********99999999887776 PP

  == domain 2  score: 76.8 bits;  conditional E-value: 9.5e-26
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf............vilsilghlilpviillllsaapyvrlirraalrslpkdlve 85 
                   g++l++++a + ++++++l+r l+ v+l lP++v ++ l+lvf             +   l ++  +v+++ ++ a+p+ ++ +++alr+ ++ ++e
    KIR61888.1  80 GVPLAWVLA-RVRFPGRRLVRALVTVPLVLPPVVGGVALLLVFgrrgllggwldaTFGVTLPFTTAGVVLAEAFVAMPFLVIAVEGALRAADSRYEE 175
                   89*******.999*********************88888888999********98777788899999****************************** PP

  BPD_transp_1  86 aaralGasrwqifrkvvlPnalppiitglilafggllggavllefl.gswpG.lgtllleailgydyseisnggvlalviavlllnlvadilqrlld 180
                   aa +lGa+rw++f +v+lP+++p +++g++l ++++lg++ ++ ++ g+ pG  +t+ l ++l+  +++      +a+v++++ll++++ il+ l d
    KIR61888.1 176 AAATLGAGRWTTFTHVTLPLVAPGVAAGAVLCWARALGEFGATITFaGNFPGrTQTMPLAVYLALETDLE-----AAIVLSLVLLTVSVAILAGLRD 267
                   ****************************************776655055576777777777777777755.....5777777777777777777666 PP

  BPD_transp_1 181 pr 182
                   + 
    KIR61888.1 268 RW 269
                   65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 1668.34
//
Query:       KIR61889.1  [L=377]
Description: N-acetylmuramoyl-L-alanine amidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-22   79.4   0.0    2.9e-11   43.4   0.0    2.4  2  PG_binding_1  Putative peptidoglycan binding domain
    8.4e-17   61.8   0.1    2.6e-16   60.2   0.1    1.8  2  Amidase_2     N-acetylmuramoyl-L-alanine amidase
  ------ inclusion threshold ------
      0.037   13.9   1.2      0.091   12.6   1.2    1.7  1  TAT_signal    TAT (twin-arginine translocation) pathway signa
      0.056   13.7   0.6         15    5.9   0.0    3.1  4  PG_binding_3  Predicted Peptidoglycan domain
        0.2   12.0   0.0          5    7.5   0.0    2.3  2  PG_binding_2  Putative peptidoglycan binding domain


Domain annotation for each model (and alignments):
>> PG_binding_1  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   7.4e-12   2.6e-08       2      54 ..     244     297 ..     243     300 .. 0.85
   2 !   43.4   0.0   8.2e-15   2.9e-11       1      55 [.     309     363 ..     309     365 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 7.4e-12
                   SHHHHHHHHHHHHTT--.SSSSSB--HHHHHHHHHHHHHTTST-S..SSBSHHHH CS
  PG_binding_1   2 gedvkelqryLsrlGylsgpadgtfgpateeaVkefQqffgLpvt..GildpaTl 54 
                   ++ v+ +q  L++ Gy   p++ tf++at++aV+++Q ++g+pv+    l++ T+
    KIR61889.1 244 SPSVRVVQYLLTHRGYA-VPVNSTFDTATVAAVQDWQARNGIPVDvdATLTTPTW 297
                   6889************7.9************************873355555555 PP

  == domain 2  score: 43.4 bits;  conditional E-value: 8.2e-15
                   BSHHHHHHHHHHHHTT--.SSSSSB--HHHHHHHHHHHHHTTST-SSSBSHHHHH CS
  PG_binding_1   1 sgedvkelqryLsrlGylsgpadgtfgpateeaVkefQqffgLpvtGildpaTla 55 
                   sg+ v ++q  L+  Gy   +++g f+ at++aV++ Q+ +gLp+ G+++++T+ 
    KIR61889.1 309 SGAPVSAVQFILNWKGYADVAVTGEFDHATRRAVQDVQRLHGLPPNGKVGTSTWC 363
                   5889*************999*********************************95 PP

>> Amidase_2  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.1   7.1e-20   2.6e-16       6     125 ..      70     205 ..      65     206 .. 0.82
   2 ?   -2.5   0.0       1.9   6.9e+03      92     113 ..     336     357 ..     324     367 .. 0.75

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 7.1e-20
                 EEEEEEEBSS.-HHHHHHHHHHSHHHH...........TTTS...S-SEEE-SSSSEEESS-TTCEES...............SSSSEHCHHGEEEEEE CS
   Amidase_2   6 dfiviHhtagssaagalavaaaeyaas...........tngs..igyhylidkdGtiyqlvdengraw...............HagdkggNdnsigIEl 76 
                 + i++Hh+a ++ ++ ++ +a     +           +ng+  +g h+ + + G +++     gr +               H+   g N + igIE 
  KIR61889.1  70 NKIIVHHMAFPNVTDYSREQAV----KlardcqdlhmdGNGWsdTGQHFTVSRGGYVLE-----GRHGslerlaagdrqmvsaHCP--GENGRAIGIEN 157
                 78*******9988766655322....134457999999888877779************.....7777666665556666666766..9********** PP

                 SSTTEEESCHHHHHHHHHHHHHHHHHHHHTEEEGGGEEEHHHH.TB-TTC CS
   Amidase_2  77 vgngdgkeppteaqyealakLvaallkrygippdrrvvgHsdi.rktdPg 125
                 +g++  +e p+ea +++l++L+a++ ++yg+  ++++ gH d+ ++++Pg
  KIR61889.1 158 EGTY-VDETPPEALLDSLVRLCATIGRQYGLH-AHDIFGHWDFrTTACPG 205
                 ****.**************************9.677****98889****9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHHHTEEEGGGE CS
   Amidase_2  92 ealakLvaallkrygippdrrv 113
                  a+ + v+++ + +g+pp+ +v
  KIR61889.1 336 HATRRAVQDVQRLHGLPPNGKV 357
                 5777888888888999988764 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.2   2.5e-05     0.091       2      22 ..       8      28 ..       7      32 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.5e-05
  TAT_signal  2 lSRRdFLKgsAAaaAAaalgg 22
                l+RR++L+++++aa  a++g 
  KIR61889.1  8 LDRRTLLRAGLGAATVAVVGT 28
                79******9999998888885 PP

>> PG_binding_3  Predicted Peptidoglycan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         5   1.8e+04      13      22 ..      96     105 ..      93     105 .. 0.78
   2 ?    5.9   0.0    0.0042        15       2      37 ..     246     282 ..     245     292 .. 0.88
   3 ?    4.4   0.0     0.013        46       4      32 ..     314     343 ..     311     353 .. 0.77
   4 ?    0.2   0.0      0.26   9.5e+02       6      31 ..     345     365 ..     340     373 .. 0.78

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 5
                   ....S---S- CS
  PG_binding_3  13 lgydvkvDGi 22 
                     +d+++DG+
    KIR61889.1  96 DCQDLHMDGN 105
                   56899***97 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0042
                   HHHHHHHHHT.....S---S---HHHHHHH....HHS CS
  PG_binding_3   2 aivilQriLgklgydvkvDGiiGpkTlaAve.arasa 37 
                   ++++ Q +L ++gy v v   +  +T+aAv+ ++a +
    KIR61889.1 246 SVRVVQYLLTHRGYAVPVNSTFDTATVAAVQdWQARN 282
                   68999*************************9866655 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.013
                   HHHHHHH.T.....S---S---HHHHHHH. CS
  PG_binding_3   4 vilQriL.gklgydvkvDGiiGpkTlaAve 32 
                      Q iL  k + dv+v G +  +T++Av+
    KIR61889.1 314 SAVQFILnWKGYADVAVTGEFDHATRRAVQ 343
                   5567777523499****************7 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.26
                   HHHHHT.....S---S---HHHHHHH CS
  PG_binding_3   6 lQriLgklgydvkvDGiiGpkTlaAv 31 
                    Qr+ g     + + G++G  T  A+
    KIR61889.1 345 VQRLHG-----LPPNGKVGTSTWCAI 365
                   566666.....8889*******9997 PP

>> PG_binding_2  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.083     3e+02      21      54 ..     250     282 ..     242     283 .. 0.86
   2 ?    7.5   0.0    0.0014         5       6      48 ..     301     343 ..     296     348 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.083
  PG_binding_2  21 vqaaLsrLGyydgeaggafrealrdALrafiave 54 
                   vq  L   Gy + + +  f+ a+  A + ++a +
    KIR61889.1 250 VQYLLTHRGY-AVPVNSTFDTATVAAVQDWQARN 282
                   6777888899.999999**************976 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0014
  PG_binding_2   6 kpeeervlaedvaeevqaaLsrLGyydgeaggafrealrdALr 48 
                   +pe +r   ++ ++ vq  L+  Gy d + +g f+ a+r+A +
    KIR61889.1 301 APELDRDASGAPVSAVQFILNWKGYADVAVTGEFDHATRRAVQ 343
                   7899999999999****************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 2377.09
//
Query:       KIR61890.1  [L=564]
Description: serine/threonine protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-42  143.8   0.0    8.1e-42  143.4   0.0    1.1  1  Pkinase         Protein kinase domain
    7.2e-28   97.6   0.0    9.3e-28   97.2   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    1.3e-07   31.8   0.8      0.012   15.6   0.0    2.7  3  APH             Phosphotransferase enzyme family
     0.0041   15.9   0.0     0.0064   15.3   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
        5.9    6.0   9.9        7.7    5.6   9.9    1.1  1  SOG2            RAM signalling pathway protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   0.0   2.2e-45   8.1e-42       1     257 [.      11     253 ..      11     256 .. 0.88

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 2.2e-45
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 y+++++lG+G++G+V+ a++++tg  vAvK +      + +  +++++E ++l+ ++ p++ rlye++e+++   +v+e+v+g +l ++l+++g   +e
  KIR61890.1  11 YTEVRELGSGASGRVVLATHDATGTPVAVKYLVGGLGGDPSFrESFRAEARLLADIDDPHVSRLYEYVESPTGAAIVMELVNGVSLRQMLRANGPTGPE 109
                 7899***************************9987766544449******************************************************* PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                  a  ++k  l+gl+  H++g++HrD KpeN+L+  +ge K++DFG+a  +  +s +t + gt++Y+APE  ++    +++D++++  +++e ltg+pp+
  KIR61890.1 110 AALCVLKGSLAGLAAAHDRGVVHRDYKPENVLVTAQGESKLADFGIAMPIGGES-TTIVSGTPRYMAPEQWTGAAAAPACDIYAATATFFECLTGRPPY 207
                 ****************************************************98.9******************************************* PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHH.TTS-HHHHHHHHHHT-SSGCCSTTHHH CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpea.seiseeakdllkkllkkdpkkRltaee 257
                     g++     l++          ++ + p + +  ++ + +ll++ ++k p +R+  ++
  KIR61890.1 208 D---GRS--LLALRD----------QHASAPVPtDPAPPPVHELLRRGMAKRPDDRPQPAQ 253
                 *...333..222333..........122333330334667777777777777777776655 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   2.6e-31   9.3e-28       4     254 ..      14     253 ..      11     258 .. 0.90

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 2.6e-31
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST..TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlke..eateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                   ++lG+Ga G+Vv +t +     + + VavK l    + + + +e++  ea+++ +++ p++ +l+  + +     iv+e+v+g +L+++Lr++   +
   KIR61890.1  14 VRELGSGASGRVVLATHD----ATGTPVAVKYLVGglGGDPSFRESFRAEARLLADIDDPHVSRLYEYVESPTGAAIVMELVNGVSLRQMLRAN--GP 105
                  589*************99....999********66115566679**************************9999*******************9..99 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwE 197
                  +  +  l++     +G++  +++ +vHrd    NvL++ +   k++DfG+a  i  ++++ +        ++mapE ++      + D+++   + +E
   KIR61890.1 106 TGPEAALCVLKGSLAGLAAAHDRGVVHRDYKPENVLVTAQGESKLADFGIAMPIGGESTTIV----SGTPRYMAPEQWTGAAAAPACDIYAATATFFE 199
                  999999************************************************55555544....45789*************************** PP

                  HHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 198 iftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfse 254
                   +t g+ py g +   + ++  +    + p+  p+ ++el+++ ++++p++Rp+ ++
   KIR61890.1 200 CLT-GRPPYDGRSLLALRDQHASAPVPTDPA--PPPVHELLRRGMAKRPDDRPQPAQ 253
                  ***.******999988888777776666665..9*******************8666 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   8.1e-06     0.029       1      84 [.      13     101 ..      13     126 .. 0.84
   2 !   15.6   0.0   3.3e-06     0.012     162     197 ..     124     157 ..     108     159 .. 0.73
   3 ?   -1.8   0.1      0.65   2.3e+03     126     167 ..     216     253 ..     186     287 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.1e-06
                 EEEEE--.SSCEEEEEEETT.-.-EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH   1 evrelsggasnrtylvttpa.g.ryvlrrnppa..raaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr 84 
                 evrel++gas r++l t++a g +++++    +    + + +++ a+ rlLa+ +  +v +++ + ++ +++ ++++l+ +v  r++lr
  KIR61890.1  13 EVRELGSGASGRVVLATHDAtGtPVAVKYLVGGlgGDPSFRESFRAEARLLADIDDpHVSRLYEYVESPTGAAIVMELVNGVSLRQMLR 101
                 69******************86788888855557567777789999999999888879*****************************99 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 3.3e-06
                 SSS-EEEE-SS-SGGGEEEC...TTEEEEE---TT-E CS
         APH 162 gelptvllHgDlhpgNllvd.pddgrvtGviDfedag 197
                 ++ +++++H+D++p N+lv+ +++ +   + Df+ a+
  KIR61890.1 124 AAHDRGVVHRDYKPENVLVTaQGESK---LADFGIAM 157
                 36789***************444444...68888777 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.65
                 HHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EE CS
         APH 126 lrqlesatarllaselldlleeleeqvlaalaallpgelptv 167
                   q +sa  + +    ++++ el ++ +a++++ +p  +p++
  KIR61890.1 216 RDQHASA--PVPTDPAPPPVHELLRRGMAKRPDDRP--QPAQ 253
                 3333333..222222222455666666666666666..4444 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.8e-06    0.0064     305     383 ..     108     176 ..     104     183 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.8e-06
  Pkinase_fungal 305 pkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmai 383
                     p+++l++l+  ++g+   + + g++HrD   +N+l+t     ++ ++ L+D+ +a+ ++ +s      +  GT+ +ma 
      KIR61890.1 108 PEAALCVLKGSLAGLAAAH-DRGVVHRDYKPENVLVT-----AQGESKLADFGIAMPIGGES----TTIVSGTPRYMAP 176
                     6789***************.*****************.....678889***********633....35679******95 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   9.9    0.0022       7.7     258     347 ..     378     466 ..     294     490 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0022
        SOG2 258 angaqsetsersasssgvqssasstPlgegstsppgalsrqslsttgststltsssksrsssrsnt.nasastprslattpa..ppasaesf..a 347
                   g+ s ++e    +++++s  ++tP  ++++++ +a+++ +++t ++ +++ts +    +s++++ +as+s p+s +t p+   p++++++  +
  KIR61890.1 378 GGGSASVAPE----VTVSPSGGTPTPAPTSASPTVAAPTTGAPAT-TRPPSPTSRPTR-TASATPSpSASTSSPPSDVTAPSvgSPSTGSTTleP 466
                 3333333333....2337788888888877776535555555555.444455555443.335555558888888888888876645555554342 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 3550.60
//
Query:       KIR61891.1  [L=316]
Description: hypothetical protein TK50_31080 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-14   53.5  15.9    9.3e-13   47.9   3.3    3.3  3  TM_helix  Conserved TM helix
  ------ inclusion threshold ------
       0.65    9.8   9.7        2.7    7.9   7.8    2.1  2  RP1-2     Tubuliform egg casing silk strands structural domai


Domain annotation for each model (and alignments):
>> TM_helix  Conserved TM helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   3.3     1e-16   9.3e-13       5      49 ..      11      55 ..       7      56 .. 0.93
   2 !   18.8   4.9   1.3e-07    0.0012       1      42 [.     100     141 ..     100     153 .. 0.91
   3 ?   -1.7   0.5      0.34   3.1e+03      24      35 ..     186     197 ..     180     207 .. 0.54

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 1e-16
                SXXHHHHTTHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-H CS
    TM_helix  5 nllnellsflPnLvgAilILlvGwiiAkfvsrlvtkllaktgidd 49
                + l  +l flP+ vg++++L+vGw++Ak v r+v+++la++g+d+
  KIR61891.1 11 DVLRAVLLFLPKAVGFVVVLVVGWLVAKAVVRVVGRVLARVGFDR 55
                567789**************************************8 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.3e-07
                 XXXXSXXHHHHTTHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    TM_helix   1 nplnnllnellsflPnLvgAilILlvGwiiAkfvsrlvtkll 42 
                 np+++l+  +++ lP+ ++Ai+I +v+  iA+ v+++++  l
  KIR61891.1 100 NPISDLIAAVVAWLPRAFVAIVIVVVAAAIARAVKDIISSAL 141
                 7999**********************************8766 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHH CS
    TM_helix  24 LlvGwiiAkfvs 35 
                 + vG i+   v 
  KIR61891.1 186 ATVGGILVVGVG 197
                 444444444444 PP

>> RP1-2  Tubuliform egg casing silk strands structural domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.028   2.5e+02      91     127 ..      37      73 ..      35      84 .. 0.81
   2 ?    7.9   7.8    0.0003       2.7      71     124 ..     126     180 ..     123     190 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.028
                 HHHHHHHHHHHHHHTT---TTTHHHHHHHHHHHHHHH CS
       RP1-2  91 AnAianAigqvLanqGvlnasnasslAsslasalsas 127
                 A+A+++ +g+vLa  G+  a     +  +la++ +++
  KIR61891.1  37 AKAVVRVVGRVLARVGFDRAVERGGIKTALARSRYDA 73 
                 89************99988888888888888776655 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0003
                 HHHHHHHHHHH-SS-.-HHHHHHHHHHHHHHHHHHTT---TTTHHHHHHHHHHHH CS
       RP1-2  71 asavaqavssvgvGA.sasaYAnAianAigqvLanqGvlnasnasslAsslasal 124
                 a+a+a+av+ +   A +  +Y++++a+ ++ ++ + Gv++a n+  +A ++ + +
  KIR61891.1 126 AAAIARAVKDIISSAlGGLSYGRVLAGVASVFIVGLGVIAALNQVGVATAVTTPV 180
                 7899999999888553679*******************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1026  (0.0572257); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.50
# Mc/sec: 1893.32
//
Query:       KIR61892.1  [L=134]
Description: hypothetical protein TK50_31085 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-26   91.2   0.0      8e-26   90.8   0.0    1.2  1  UPF0225   UPF0225 domain
  ------ inclusion threshold ------
      0.021   14.7  11.6      0.031   14.2  11.6    1.2  1  SEC-C     SEC-C motif
       0.13   13.0   1.0       0.17   12.5   1.0    1.4  1  SnoaL_2   SnoaL-like domain


Domain annotation for each model (and alignments):
>> UPF0225  UPF0225 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.0   1.3e-29     8e-26       1      99 []      37     131 ..      37     131 .. 0.94

  Alignments for each domain:
  == domain 1  score: 90.8 bits;  conditional E-value: 1.3e-29
     UPF0225   1 taeaLmRsRysAyvlkdadYlvatthpetreaeeeaeleatakkvkflkleiletek.eekedeatVeFkarlkekgkektlhErSrFvredgrWlYvd 98 
                 taeaLmRsRysAy+++d+ Yl++++h +tr+ + + e        ++++l+il+te+ +  ++++tV+F+a+++++g+  tl+E+SrF re+grW+Y+d
  KIR61892.1  37 TAEALMRSRYSAYAIGDTTYLLRSWHTSTRPTHLHPEP-----GQRWTRLDILHTERgGLLDTTGTVTFQAHYRQAGRPATLTEHSRFTRENGRWVYLD 130
                 79*****************************9995554.....679**********9677799**********************************99 PP

     UPF0225  99 g 99 
                 +
  KIR61892.1 131 A 131
                 6 PP

>> SEC-C  SEC-C motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2  11.6   5.2e-06     0.031       4      19 .]      12      27 ..      11      27 .. 0.97

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.2e-06
       SEC-C  4 pCPCGSGkKYKkCCgp 19
                pCPCG G++Y +CCg+
  KIR61892.1 12 PCPCGTGQPYPDCCGK 27
                9*************97 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.0   2.9e-05      0.17      49     100 ..      72     127 ..      30     129 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.9e-05
                 HEEEEEEEEEEEEEETTEEEEEEEEEEE....EETTSSEEEEEEEEEEEEETTEEE CS
     SnoaL_2  49 afpdlrfeihdvvadgdrvavewtvtgt....ipatgrgvtvrgvdvfrvrdGkiv 100
                   p+ r++  d++  ++  ++  t t+t    ++  gr+ t++ ++ f+ ++G++v
  KIR61892.1  72 PEPGQRWTRLDILHTERGGLLDTTGTVTfqahYRQAGRPATLTEHSRFTRENGRWV 127
                 4688999999998888877777666666778799*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 988.50
//
Query:       KIR61893.1  [L=219]
Description: phytochelatin synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-21   78.0   0.3      2e-21   77.0   0.3    1.5  2  Peptidase_C39_2  Peptidase_C39 like family
    2.5e-05   23.6   0.2     0.0002   20.7   0.2    2.0  1  Phytochelatin    Phytochelatin synthase
     0.0066   16.7   0.1      0.013   15.8   0.1    1.5  1  BtrH_N           Butirosin biosynthesis protein H, N-terminal


Domain annotation for each model (and alignments):
>> Peptidase_C39_2  Peptidase_C39 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.3   3.4e-25     2e-21       1     144 []      54     193 ..      54     193 .. 0.87
   2 ?   -2.7   0.0       1.3   7.7e+03      30      44 ..     200     214 ..     198     217 .. 0.81

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 3.4e-25
  Peptidase_C39_2   1 ldvplynQldelpngCeptslamvlsylgkkvtqnelakelktnssgdpntgfvgnit.dksglgvynepivklaekyglkvsdtrgssieevk 93 
                      ldv++++Q   +  +C+p++++++ls++gk+++ +++ake++t++     t  +++it   ++ +  + ++ ++  +  ++  +++++  ++++
       KIR61893.1  54 LDVRYEAQ--PNFFYCGPAAARNALSVQGKNIDVDTMAKEMGTTE-AG--TNSINDITpVLNKETGKPDAYRSVEIRTHKADDKQTDTLRADIV 142
                      79******..9999******************************8.33..4445678875566666888888888888887888889999**** PP

  Peptidase_C39_2  94 keidagkPvvvsvtt.fkplndgeikftssgHlvvitGYdekgkrvyvnDPa 144
                      +++d+g++vv++++   ++ +dg ++++++gH++ ++GY ++g +v ++D+a
       KIR61893.1 143 RTVDNGRAVVANIAGtTTD-TDGVTHSFEGGHYISVVGYRDNGHTVKIADSA 193
                      *************865555.58889*************************85 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.3
  Peptidase_C39_2  30 kkvtqnelakelktn 44 
                      +++t ++la++++t 
       KIR61893.1 200 YWITVDHLADWIATR 214
                      568999999999986 PP

>> Phytochelatin  Phytochelatin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.2   3.3e-08    0.0002      37     199 ..      54     213 ..      36     219 .] 0.73

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.3e-08
                    HHHH----SSCCGHHHHHHHHHHHHHT-----TTTTT-----TTTCCGSHS-HHHHHHH-.--HHHHHHHHHTTT-EEEEEEGGGS-HHHHHHHHH CS
  Phytochelatin  37 LaeqfetqsepayCGlaslvmvLnaLevdpkrkwkgpwrwfteellldcciklekvkkeG.itleelaelakcnglkvevvraselsleefrklvk 131
                    L   +e+q +  yCG+a++    naL+v+ k+          +e+  +++  ++++++   +  +e  +  +  ++++++++a++ + +++r ++ 
     KIR61893.1  54 LDVRYEAQPNFFYCGPAAAR---NALSVQGKNIDV---DTMAKEMG-TTEAGTNSINDITpVLNKETGKPDAYRSVEIRTHKADDKQTDTLRADIV 142
                    55667788888888887765...566555333322...22233333.222223333332203335566666677799999999************* PP

                    HHCTSTT..EEEEEEEEGGGGTSSS......SEEEEEEEEEETTTTEEEE--S-TTT---EEEEHHHHHHHHSS CS
  Phytochelatin 132 evlkseeedkfvvvnysRkalgqtg......eGHfSPigaYdeesdsvLiLDvarfkYppvWvkleeLyeamkt 199
                    +++++    + vv+n   ++ + +g      +GH+  + +Y ++   v i D a+    ++W+++++L + ++t
     KIR61893.1 143 RTVDNG---RAVVANIAGTTTDTDGvthsfeGGHYISVVGYRDNGHTVKIADSANPDQASYWITVDHLADWIAT 213
                    ***994...69999999988877665445558***********************************9876665 PP

>> BtrH_N  Butirosin biosynthesis protein H, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   2.1e-06     0.013      60     133 ..     119     191 ..     106     192 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.1e-06
      BtrH_N  60 akrlglkvevketkdpeeawkalkeeLdaGrpvivqvdvyyLpYlpkesrlhfnaHnvvvyGyddeegealvsD 133
                  + ++++ +    k+++++ +++ +++d+Gr v++ +     +     ++++ ++H++ v+Gy+d+++++ ++D
  KIR61893.1 119 YRSVEIRTHKADDKQTDTLRADIVRTVDNGRAVVANIAGTTTDTDGVTHSFE-GGHYISVVGYRDNGHTVKIAD 191
                 56677888888888999999**************976666666666668898.*******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1651.41
//
Query:       KIR61894.1  [L=369]
Description: magnesium transporter CorA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-54  185.0   0.1    2.2e-54  184.8   0.1    1.0  1  CorA      CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.8   0.1   1.2e-58   2.2e-54       3     290 ..      72     363 ..      70     365 .. 0.95

  Alignments for each domain:
  == domain 1  score: 184.8 bits;  conditional E-value: 1.2e-58
        CorA   3 gfvWldlsspteeeleeLaeelgldelaledlldseerprvedyddylllvlpsveldkseeeeeev......plsillgdnflitvrreplealdevi 95 
                 +fvWl l +pt++ ++++ +++glde  ++++l++ +rp ++ +dd +llvl+   + +  e ++ +       + i++gd+f++tvr++   al +v+
  KIR61894.1  72 SFVWLGLHDPTPAVMTAVGHTFGLDEFHITQALTDGHRPTLQRHDDVTLLVLRTAAYVEHTELTDTSevvdtgDVMIFIGDRFVVTVRHGAPGALTTVR 170
                 79***********************999999************************999999999888899*9*************************** PP

        CorA  96 krlk.deggkpkspgellyrlldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedkey 193
                 ++l+ ++    + p  + y+++ ++v +++++  ++e++l++le++++ +++  ++  ++ql+r++v+l+ra++p ++ l r la+  ++  +++ ++ 
  KIR61894.1 171 QDLQqRRTILAEGPWAVAYAICARMVTQYLDVATHVETDLEQLEETVFARERTADIPHIYQLKREIVELKRAVLPAQAPL-RTLATPPTDGPPPALRRW 268
                 ****877788999*******************************************************************.999989999999999999 PP

        CorA 194 lrdlldelerllemlealrerleslqdtyssllserlNrvmkvLTvltaiflPlTlitGiyGmNfkglPelewsygypfvlllglmallailllfwf 290
                 + d+  +l+r+++ ++a+ ++l+s+ +t  ++l+ ++N+ m++++ ++ai    T ++GiyGmNf ++Pel+w ygy+++  l+lma +a+ l  +f
  KIR61894.1 269 FTDVDGDLARAVDRVNAYDDLLNSILQTRLAQLAVEQNNDMRKIAAWAAIAATQTAVAGIYGMNFTHMPELHWRYGYGAA--LLLMATAALTLHRLF 363
                 ***************************************************999**************************..666666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:01.11
# Mc/sec: 1003.38
//
Query:       KIR61895.1  [L=207]
Description: peptidase C60 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-19   70.0   0.0    2.1e-19   69.6   0.0    1.2  1  Sortase   Sortase domain


Domain annotation for each model (and alignments):
>> Sortase  Sortase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   1.2e-23   2.1e-19       1     124 [.      64     205 ..      64     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 1.2e-23
                 EEECCGTEEEEEEE..SCSSCHCTT.......SEEECSTT-BTTSSSEEEEEEE...BSSTTSTTGGGGGGHTT-EEEEEESSSEEEEEEEEEEEEEET CS
     Sortase   1 lsipalginlpvle..gtdeedlka.......gagfldesakpgeagnfvlaGH...rvgkgavFsdLkklekgdaivvetkkgksyvYrvfsveivtp 87 
                 ++ip +++++ ++    t++ +l+         ag+++    pgeagn+v++GH   r +++avF +L++l++gd+i ++++++++++++v++++   +
  KIR61895.1  64 ITIPTIDVHADIVPvaTTTDGQLEVppagpppAAGWYRPGVSPGEAGNAVIVGHvdsRDTGPAVFFNLGRLRPGDRIHITRADNRTATFTVDDIRAYPK 162
                 79********9999742444444447779999*******999************877689***********************************6666 PP

                 THG..GGGSHHTTSEEEEEEEES.SSSS..S.TSEEEEEEEEE CS
     Sortase  88 dev..svldptpgdaiLtLiTCt.pfds..e.nneRlivhAkl 124
                 ++    +++ t+ +++L LiTC   fd+  + + ++liv A+ 
  KIR61895.1 163 TRFptALVYGTSPTPQLRLITCGgRFDQrhHtYPDNLIVFATA 205
                 666775555577889********888889856********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.50
# Mc/sec: 1246.63
//
Query:       KIR61896.1  [L=161]
Description: hypothetical protein TK50_31105 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1217.09
//
Query:       KIR61897.1  [L=396]
Description: lycopene cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-72  242.9   0.1    6.2e-72  242.7   0.1    1.0  1  Lycopene_cycl  Lycopene cyclase protein
  ------ inclusion threshold ------
       0.18   11.8   0.8       0.39   10.7   0.3    1.8  2  NAD_binding_9  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.7   0.1   6.9e-76   6.2e-72       1     378 [.      10     379 ..      10     381 .. 0.90

  Alignments for each domain:
  == domain 1  score: 242.7 bits;  conditional E-value: 6.9e-76
  Lycopene_cycl   1 DvvviGa.GpAglslAarlteakpglkvvlieaspsllfpnnyvWsdefedlgaleecvehsWsgtivylddgkkillg..raYgrvsskrlkeel 93 
                    Dv+++G+ G+A l lAa   +  +gl+v ++++      +++++W ++++  g+l+ ++++sW +++v  ++ +++l    ++Y++v+s+   ++ 
     KIR61897.1  10 DVALVGGgGAASLVLAALDRHGLAGLRVAVVDPVRRR--GQDRTWAFWGRPGGELDGVLSASWGHVEVVTPARRRVLDLapLRYAMVRSAPVYARA 103
                    8998975278999***9998999********887776..99******************************99988755679*********99998 PP

  Lycopene_cycl  94 lerlvengvklleakvesveeeeageslvvleggr.kirarlvvdarglaslkkarrlglQtfyGvevevdnppfdldkmvlMDfrveqklkgltF 188
                    +e     g+ + +a v+   ++   +++v   +g   +ra++v+d+r+ + ++++r+  lQ+f+G+ v ++   fd+ ++vlMDfr++q+ +g +F
     KIR61897.1 104 AEAERRLGAVRFDAAVAGLDDDGT-RVVVRGGDGApLVRASWVLDSRPRPPARPGRTSWLQHFRGWWVASEVALFDPRRAVLMDFRTPQPGRGVSF 198
                    888777899999999999988877.4444444444889********************************************************** PP

  Lycopene_cycl 189 lYalPldsdrllvEeTelaskpeLpadalkkrlaaylralglkvke..vveeEqgviPvtlggslprleqkvlaiGaaaglvhPaTGYsvarslae 282
                    +Y+lP++++ +lvE+Te++++  L+ d + ++l+ yl  lg+  +   v e E+gviP+t++++++r  ++v+++G+a+g+++P+TG+++ + l++
     KIR61897.1 199 GYVLPVSDRFALVEYTEFSPAR-LTGDGYDRALRGYLGRLGWDPAAlvVREVEDGVIPMTDAPFPRRPSPRVVRLGTAGGATRPSTGFTFSAMLRQ 293
                    *********************9.*******************7543216677******************************************** PP

  Lycopene_cycl 283 apllasaiaaalresslsarawatlw.prerkrqreffrllglalllkldiegrrrfldaFfrlpkellqrFlasrlsladkllialslfviavnr 377
                    a+     +aaal+  + +a ++a  + +r+ +++++ +r+l+     ++++ g ++f ++F r p+ ++ rFl++ + + ++l ++ s +  ++ +
     KIR61897.1 294 AE----QVAAALA--GGRAPVPAPAYpRRHLWMDAVALRALD-----TGRVGGPEFFDRLFDRNPASRVLRFLDGDTGVVEDLAVMRSSPLAPMTS 378
                    **....7888888..4555555555505678***********.....*******************************************999987 PP

  Lycopene_cycl 378 a 378
                    a
     KIR61897.1 379 A 379
                    6 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   4.3e-05      0.39       1      42 [.      12      52 ..      12      55 .. 0.92
   2 ?   -3.4   0.0      0.92   8.3e+03     116     144 ..     111     139 ..     100     145 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.3e-05
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvw 42
                   a+vG+G ++ +vl++L ++    + l++ ++dp +  g+ r w
     KIR61897.1 12 ALVGGGGAASLVLAALDRHG--LAGLRVAVVDPvRRRGQDRTW 52
                   79*****************7..***********7777999999 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.92
  NAD_binding_9 116 tvevhraevvdleeradgqavlladgasl 144
                        + a v  l+++++++ v+  dga l
     KIR61897.1 111 GAVRFDAAVAGLDDDGTRVVVRGGDGAPL 139
                    44455677888888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2929.55
//
Query:       KIR61898.1  [L=375]
Description: beta-lactamase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-52  178.3  10.8    6.1e-52  176.9  10.8    1.6  1  Beta-lactamase  Beta-lactamase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.9  10.8   3.4e-56   6.1e-52       2     313 ..      23     352 ..      18     365 .. 0.89

  Alignments for each domain:
  == domain 1  score: 176.9 bits;  conditional E-value: 3.4e-56
                     HHHHHHHHHHTTESEEEEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTSTTCTTGGGTTEBH CS
  Beta-lactamase   2 drlvrelmaqggipGvavavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylPefagpgkgkiTl 96 
                     d+lv+ + +    +Gv+va + +g++++d+ +Gvad  +grp+ta t     S+ K +ta++v+ l+e+G+ld+d ++++ +Pef+++gk++iTl
      KIR61898.1  23 DDLVCTGRE----AGVQVAAYLHGEPIVDAHAGVADTTTGRPMTAATGVYGVSTGKGLTATVVHVLAERGHLDYDLRIADVWPEFGRHGKDHITL 113
                     555666666....********************************************************************************** PP

                     HHHHTTHSSCSSSSTSTTCTSHHHTHHHHHHHHHHSBSSSSTTSCEE-SHHHHH.HHHHHHHHHHTSHHHHHHHHHTTTTTTST.TEESSTTGGG CS
  Beta-lactamase  97 rdLltHtsGlpdlfasdlleeaaadaaellralatlppkyapGtkwgYsntgyg.llgellekvtgrsleqllreeilrpLgmk.dtelgppesg 189
                     r+ ltHt+G+p+l + d + ++ ad+++++  +a ++p ++pG++ +Y+++++g ++ge++++vtgr+++++l+e +++pLg   +   g+ + +
      KIR61898.1 114 RHALTHTAGIPAL-PADVTLDDFADWDRMCGIVADARPLWTPGHQLAYHAWTFGwIVGEVIRRVTGRRVGDILTEDVAAPLGVAgELLCGVHPTA 207
                     *************.8888888888********************************************************966537888999999 PP

                     GGGBEEEEEEETCEEECSCETTHHHHC...........................TTTBEEEEHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHTSE CS
  Beta-lactamase 190 dprdaagytgngpearappanlpaeae...........................gagglistardlarflglalegglllsaetlaqltaklssg 257
                     +p +a++ +gn     ++ a   +  +                           g    ++ ar +a++l +  +g +l s+  l++ +  ++ g
      KIR61898.1 208 QPGLARMEDGNLSAMLEAFAGQLPHLDqvappgvrpdttlatrpdvlavdvpavGTLTARAAARMYAALL-GPVDGVRLISPHRLRAVSRPAVHG 301
                     9999999966655444444444444448999999999999999999999997666666789999999999.77888999999999********** PP

                     EEECTTEEEECECSSEEEEECCHTEEEEEEESTEEEEEEEECGGTEEEEEEESBCS CS
  Beta-lactamase 258 ttrpagiraglglGwvladktgapgtfghtGggygtyvfvdpeanlvvavltnrdp 313
                     t +++g   ++glG+ + d     g+fg  G  +g+  f++p  +l+va   nr  
      KIR61898.1 302 TEWVFGRETTWGLGYAIDD----DGSFGAAG-SGGSLAFAYPRWGLTVAATRNRLA 352
                     ******************9....788*****.****************99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2793.59
//
Query:       KIR61899.1  [L=160]
Description: ribonuclease H [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-47  158.8   0.0    1.2e-46  158.5   0.0    1.0  1  RNase_H   RNase H
     0.0023   17.7   0.1     0.0075   16.1   0.0    1.9  2  RVT_3     Reverse transcriptase-like
  ------ inclusion threshold ------
      0.038   13.8   0.5      0.045   13.5   0.5    1.1  1  RecC_C    RecC C-terminal domain


Domain annotation for each model (and alignments):
>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.5   0.0     2e-50   1.2e-46       4     142 ..      10     147 ..       8     148 .. 0.94

  Alignments for each domain:
  == domain 1  score: 158.5 bits;  conditional E-value: 2e-50
                 EEEEEEEEEECTTTCEEEEEEE.CTT..EEEEEEECCCCHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTH CS
     RNase_H   4 vvvYtDGsclgnpgeggagavl.ykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknk 101
                 v ++tDG+c+gnpg+gg+gavl y+  +r +      ++tnnr+EL+A+i aL+ l+++ +v + tDS+Yv++git w+++wk+n+w t++ q pvkn+
  KIR61899.1  10 VEIWTDGACSGNPGPGGWGAVLrYGTHERDLCGGEATPTTNNRMELMAAIRALESLTRPVSVRLHTDSTYVRNGITGWLAGWKRNGWVTAARQ-PVKNA 107
                 689*****************997877566777777789*************************************************888888.***** PP

                 HHHHHHHHCHCSSEEEEEE-SCCSSSTHHHHHHHHHHHHHH CS
     RNase_H 102 dlaellkelakkkkvqlkwvkgHaGvpkgNemaDrlAkeaa 142
                 dl+++l++++++++v++ wvkgH+G+p +Ne+aD lA +++
  KIR61899.1 108 DLWQRLEAACARHEVTWLWVKGHNGHP-ENERADALAGRGM 147
                 **************************9.*********9875 PP

>> RVT_3  Reverse transcriptase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.3e-06    0.0075       2      54 ..      14      64 ..      13      86 .. 0.87
   2 ?   -1.3   0.0       0.3   1.8e+03      54      69 ..     116     131 ..      99     133 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.3e-06
       RVT_3  2 fdgafkkksgaggagvvirdsnGevllagaeklqgkasveeAElqALlrGLql 54
                +dga++ + g gg+g+v+r  + e+ l+g e   + +++   El+A +r+L+ 
  KIR61899.1 14 TDGACSGNPGPGGWGAVLRYGTHERDLCGGEA--TPTTNNRMELMAAIRALES 64
                69**************************9987..5567778899999999985 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.3
       RVT_3  54 lalklgirrlvvegDs 69 
                 ++++++++ l+v+g++
  KIR61899.1 116 ACARHEVTWLWVKGHN 131
                 4678899999999987 PP

>> RecC_C  RecC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.5   7.5e-06     0.045      93     160 ..      53     140 ..      44     158 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.5e-06
      RecC_C  93 ealaealrallgeepleslevdldlggtg....LtgtldglrergllrwrpsklkakdllraWlehLalca.....................l 160
                 ++l++a+ral +   ++++ v+l+ ++t     +tg+l g+ ++g+++   ++ ++ +  ++W ++ a+ca                      
  KIR61899.1  53 MELMAAIRALESL--TRPVSVRLHTDSTYvrngITGWLAGWKRNGWVT---AARQPVKNADLWQRLEAACArhevtwlwvkghnghpeneraD 140
                 5677888777666..799999999998778999*********998777...777788888889888888888888888888888775444430 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1095.54
//
Query:       KIR61900.1  [L=406]
Description: cytochrome P450-SU2 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-36  125.4   0.0    7.6e-32  110.6   0.0    3.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.0   4.2e-36   7.6e-32      29     433 ..      30     376 ..      18     404 .. 0.85

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 4.2e-36
                 HHHHH-SEEEEEETT.EEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHH......HTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHH CS
        p450  29 lqkkygpifrlklgs.kpvvvlsgpeavkevlikkgeefsgrpdeallatsr......kpfkgkgvlfangekwkklRrfltptltsfgklsleelvee 120
                  ++  gp+ r++l +  p+ +++++ +v++vl + g  fs++ +++ +  +r      + +++ g + ++ge++ +lRr+lt++++ ++ +++e+l+++
  KIR61900.1  30 RHRLAGPVTRVRLPTgAPAWLVTRHADVRQVLRHPG--FSADLERPGFPLLRplppqsESDRQGGFIRMDGEEHFRLRRMLTAEFMIKNVRRIEPLIQQ 126
                 56677999999997769999***************8..888889988876542222216788999***********************5559******* PP

                 HHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHH CS
        p450 121 eaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllrklkeavkklkdl 219
                  ++  ++ l      +   d++e ++  + +++   l+g++   + d+++      ++  s+        ll+             + ++++ ++l d+
  KIR61900.1 127 TVDAALADLAAAGPPA---DLVETFALPVPSIVICHLLGVP---YADHDF------FQVRSRT-------LLDRTT--------SMELVRAHAQELRDY 198
                 *****99998876666...**********************...557755......3333222.......233333........33344444599**** PP

                 HHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHC CS
        p450 220 ldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddl 318
                 l++l+  r+++   +     d+++ l+ ++     + +l+ +el+  +l ll+aG++Tt++ +    ++L++ P   ++lre  +++            
  KIR61900.1 199 LRELVVARHRDAGGD-----DLISRLVRDR--VATG-QLTVDELVGMALLLLVAGHETTANMIGLSTLLLLREPGRFAALRESPHRA------------ 277
                 **********99999.....*********8..4444.6********************************************94444............ PP

                 CT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHH CS
        p450 319 qklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerl 417
                          ++E LR+ +vv ++lpR ++ d +i+g +i++G  vi  l+  +rdpevf++PeeFdp R            +++l+FG+G+++CiG++l
  KIR61900.1 278 ------AELVEELLRYLSVVRTGLPRLALVDAEIGGQVIRAGEGVIAVLSLANRDPEVFDDPEEFDPYRQ----------AHQHLAFGFGVHQCIGQPL 360
                 ......45699********************************************************873..........3569*************** PP

                 HHHHHHHHHHHHHHHE CS
        p450 418 ArmelklflatlLqnF 433
                 Ar el+++l+ l  +F
  KIR61900.1 361 ARAELRIALVGLADRF 376
                 ********99877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2673.18
//
Query:       KIR61901.1  [L=76]
Description: hypothetical protein TK50_31140 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       151  (0.00842211); expected 358.6 (0.02)
Passed bias filter:                      112  (0.00624686); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.45
# Mc/sec: 507.19
//
Query:       KIR61902.1  [L=292]
Description: oxetanocin A resistance protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-20   70.1   4.1    5.6e-11   41.9   0.6    2.3  2  Pentapeptide    Pentapeptide repeats (8 copies)
    0.00089   19.4   0.0     0.0083   16.3   0.0    2.3  1  Pentapeptide_3  Pentapeptide repeats (9 copies)
     0.0044   17.2   0.0     0.0087   16.2   0.0    1.5  1  Pentapeptide_4  Pentapeptide repeats (9 copies)


Domain annotation for each model (and alignments):
>> Pentapeptide  Pentapeptide repeats (8 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.2   3.5e-13   2.1e-09       4      39 ..     185     220 ..     185     220 .. 0.90
   2 !   41.9   0.6   9.4e-15   5.6e-11       5      36 ..     211     242 ..     207     244 .. 0.62

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 3.5e-13
                   TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEEC CS
  Pentapeptide   4 sgAnLsganLsganlsgAnLtgAnlsgAdLsganLs 39 
                   +gA L  a+L++a+l gAnL+gA l gAdL+g++L+
    KIR61902.1 185 RGAVLVAADLRRADLVGANLRGAVLLGADLRGVDLT 220
                   589999999999999999999999999999999997 PP

  == domain 2  score: 41.9 bits;  conditional E-value: 9.4e-15
                   T-B-CCSCCEECCCESEEECT-B-TT-EECCE CS
  Pentapeptide   5 gAnLsganLsganlsgAnLtgAnlsgAdLsga 36 
                   gA+L+g +L+ a+l+gA+L+gA+l+gAdL+g+
    KIR61902.1 211 GADLRGVDLTLADLTGADLRGADLRGADLRGT 242
                   66666666666666666666666666666666 PP

>> Pentapeptide_3  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.4e-06    0.0083       3      46 ..     201     241 ..     184     254 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.4e-06
  Pentapeptide_3   3 ganFsgaadFrgatFsgaasFsnadFgsadFsgarFtgdvdFsg 46 
                     gan++ga  + ga  +g  + + ad+++ad++ga    ++d++g
      KIR61902.1 201 GANLRGA-VLLGADLRGV-DLTLADLTGADLRGADLR-GADLRG 241
                     5555555.5555555555.555555555555555554.555554 PP

>> Pentapeptide_4  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-06    0.0087      16      68 ..     192     244 ..     185     253 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.5e-06
  Pentapeptide_4  16 vnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnf 68 
                     ++++ a+l ++n++++ l  + ++  +l  +d++++dl+ a + g +l+++ f
      KIR61902.1 192 ADLRRADLVGANLRGAVLLGADLRGVDLTLADLTGADLRGADLRGADLRGTLF 244
                     45555666666666666666666666666666666666666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1935.71
//
Query:       KIR61903.1  [L=472]
Description: RNA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-147  492.0   0.0   1.9e-147  491.8   0.0    1.0  1  RtcB      tRNA-splicing ligase RtcB


Domain annotation for each model (and alignments):
>> RtcB  tRNA-splicing ligase RtcB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  491.8   0.0    1e-151  1.9e-147       1     412 []      43     472 .]      43     472 .] 0.98

  Alignments for each domain:
  == domain 1  score: 491.8 bits;  conditional E-value: 1e-151
                 HHHHHTTSTTB-S-EEEEEEEE--SSS-EEEEEEE-....-EE-HHHC-SST.-EEEEEEEEEEHHHHGGGHHHHHHHHHHHS-------------.HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        RtcB   1 qlknvaslpgivkhvaamPDvHlGkgapiGsViatk....gviiPaaVGvDI.CGvrllktnltaeeleeklkelvkelekavpvglgskkkvkls.kk 93 
                 q++nva+lpgiv +++amPDvH+G+g+piG+V+at+    gv++P++VG+DI CGvrll  +l++ +l +  ++l++ l +a+p g+g+ +  +l+ ++
  KIR61903.1  43 QVANVATLPGIVGASYAMPDVHWGYGFPIGGVAATDvaagGVVSPGGVGFDIsCGVRLLAADLDRTDLPRVRDALMDGLDAAIPRGMGRGAVWQLAdRA 141
                 89******************************************************************999****************988777776479 PP

                 HHHHHHHHTHHHHHHTTSS-GGGGGGBGGGG--TT--GGGS-HHHHHHHGGGTT---STT-EEEEEEEEEES-HHHHHHHT--TTEEEEEEEE--HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        RtcB  94 eleevleegakwaveeglgeeedlekieeegalkeadlekvskkakerarkqlGtlGsGNHFiEvqlveeildeeaakalgleegqvvvmlHsGSRglG 192
                 el++vl+ g+++ave+g g  +dl+++e+ g +++ad+ +vs++a +r+++q+G+lGsGNHF+Evq v+e++de++a+a+gl+ gqvvvm+H+GSRglG
  KIR61903.1 142 ELDAVLRGGSRYAVERGHGVPRDLARCEDAGVVDDADPGQVSDRAVQRGQQQVGSLGSGNHFLEVQAVDEVYDEAVAAAFGLRVGQVVVMIHCGSRGLG 240
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHCCHHHCT---SSGGG--EETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T--HHHH--EEEEEEESEEEEEEEE..T. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x. RF
        RtcB 193 hqiaedylkiakkalkkkgiklpdrdLaylpagseegqaYlkamqaaanyAkaNRqvitervreilekvlkkekedlelelvvdvaHNiakkEehe.d. 289
                 hqi++d+++ +++a+  +gi++pdr+La++p++s++g+aYl am+aaanyA+aNRq++t+ +r++++++ ++     +l+lv+dv+HN+ak E+h  d 
  KIR61903.1 241 HQICTDHVRAMERAMPGHGIEVPDRQLACAPVRSPQGRAYLGAMAAAANYARANRQLLTAAARRVFARTAGS-----GLHLVYDVSHNLAKIETHGvDg 334
                 ******************************************************************999964.....5679**************9845 PP

                 ..EEEEEEEES-EE-.............TT--EEEE--STTS-EEEEE--HHHHSSSEE---S-----------------TTTTTCCCT-EEEE----- CS
                 ..xxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        RtcB 290 ..ekvlVhRKGAtrA.............kvgqpviipGsmgtkSyivkGkgnaesfgStsHGAGRlmsRakakkkfkleevkkdleeqgigvearkkeg 373
                   ++++VhRKGAtrA             ++gqpv++pGsmgt+Sy+++G   a +f St+HGAGR+ sRa+a ++++++e++++l+++gi v+ ++ +g
  KIR61903.1 335 adRRLCVHRKGATRAlppghpqlpadlrAAGQPVFVPGSMGTASYVLTGVAGAPAFASTCHGAGRVRSRAQAGRSVRGQELRRELQARGIAVRGASWRG 433
                 66************************************************************************************************* PP

                 -------------HHHHHHHHCTS-EEEEEEEEEEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        RtcB 374 vleEapeaYKdideVveaqaeaglvevvarlkpvlvvkg 412
                 ++eE+p+aYKd+++Vv+++++agl++ varl p++vvkg
  KIR61903.1 434 LAEETPQAYKDVSAVVDVAEAAGLCRRVARLVPLGVVKG 472
                 **************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3373.06
//
Query:       KIR61904.1  [L=142]
Description: archease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-19   70.1   0.0    2.6e-19   69.8   0.0    1.1  1  Archease  Archease protein family (MTH1598/TM1083)


Domain annotation for each model (and alignments):
>> Archease  Archease protein family (MTH1598/TM1083)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   1.4e-23   2.6e-19       4     138 .]      12     142 .]      10     142 .] 0.86

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 1.4e-23
                 ---SSEEEEEEE-SSSHHHHHHHHHHHHHHHS--TT---S-EEEEEEEESSSHHHHHHHHHHHHHHHHHT--S----EEEE.E-SSSEEEEEEEE---- CS
    Archease   4 ldhtADviieawGksleeafesaalalfeymtdlskvepkeekeieveaedledlLfdfLdellylfdteyfvfkevkvdeeeeeeeleleaeargekf 102
                 + htADv+ieaw+++ e ++++a+ a++e+++d+    p  e e++v a d  dlL+ +Lde++++++t  ++    +v+      +  l+++ r +  
  KIR61904.1  12 VAHTADVRIEAWAPDREGCVAEAVAAMVETFADTTGAGPGVEAEFDVPAGDDADLLVGVLDEVIFRLETAGTLPVTTRVSA---TGSGGLRVRWRLVDT 107
                 67********************************************************************99988885544...344555555555555 PP

                 .-TT--------B--S---EEEEETTEEEEEEEEE- CS
    Archease 103 dkekhevqtevKAvTyhelrieeeddgweayvvvDi 138
                       v++  KAv ++elr+     gw + v++D+
  KIR61904.1 108 GAV-ELVGAVPKAVALQELRFGPGPRGWSCAVTLDV 142
                 222.2245888************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1025.03
//
Query:       KIR61905.1  [L=504]
Description: FAD-containing monooxygenase EthA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-12   47.0   0.0    4.6e-12   45.1   0.0    1.8  1  FMO-like       Flavin-binding monooxygenase-like
      7e-11   42.2   0.3    3.8e-07   30.2   0.0    3.0  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    9.8e-11   41.4   0.0    4.2e-10   39.3   0.0    1.9  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.1e-07   31.5   0.0      2e-07   30.6   0.0    1.4  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.7e-06   27.4   0.3    0.00025   20.3   0.0    2.6  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    3.1e-06   27.6   0.2      0.011   16.3   0.0    2.6  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    8.8e-06   25.1   0.0    0.00019   20.7   0.0    2.2  2  Thi4           Thi4 family
    0.00046   19.9  13.1    0.00082   19.1   0.4    3.9  4  DAO            FAD dependent oxidoreductase
     0.0017   17.7   4.8       0.75    9.0   0.1    3.1  3  FAD_binding_3  FAD binding domain
     0.0039   17.3   0.1       0.27   11.3   0.0    2.5  3  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.014   14.0   0.1        3.6    6.0   0.0    2.4  3  Mqo            Malate:quinone oxidoreductase (Mqo)
       0.04   14.4   0.4       0.12   12.8   0.0    1.9  2  NAD_binding_7  Putative NAD(P)-binding
      0.073   12.4   0.3      0.073   12.4   0.3    2.8  3  FAD_oxidored   FAD dependent oxidoreductase
      0.093   11.8   2.1       0.22   10.5   0.1    2.2  2  FAD_binding_2  FAD binding domain
      0.095   12.7   7.6        2.5    8.1   0.1    3.9  4  NAD_binding_9  FAD-NAD(P)-binding
      0.095   12.8   3.2       0.12   12.5   1.0    2.2  2  SnoaL_4        SnoaL-like domain
        0.1   12.7   0.0       0.23   11.6   0.0    1.5  1  DUF3601        Domain of unknown function (DUF3601)
       0.17   12.6   4.8      0.085   13.5   1.0    2.5  2  SnoaL_2        SnoaL-like domain
       0.43    9.6   1.6        2.9    6.9   0.0    2.5  3  GIDA           Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   4.9e-15   4.6e-12      83     221 ..      79     216 ..       5     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 4.9e-15
    FMO-like  83 nsklleylklfakefdllkyiqfkttvcsvkkrpdfstsGqwevvtekegk.kesavfda.vmvctGhhvnphlplesfpGiekfkGqyfhsrdykepe 179
                  + +  y++  a+e+++ ++i+f+  v++ +   d+ ++ +w v +++++  ++++v  a + vc+G++ +       +pG++ + G+++h +++    
  KIR61905.1  79 GESIRAYVRDTAHEYGVDRHIRFHHRVLAAR--WDS-ATARWTVRAHRDDTgEDVTVTCAfLFVCSGYYRYDAGYTPDLPGVDSYTGRLVHPQHWPADL 174
                 567899********************98764..564.5779***9998876256777777357********999999********************** PP

    FMO-like 180 vfkgkrvlviGlGnsggdiavelsrtaeqvllstrsGswvls 221
                   +g rv+v+G G ++  +   l+r a++v +  rs ++v++
  KIR61905.1 175 DHTGARVVVVGSGATAVTLVPALARRAAHVTMLQRSPTYVIA 216
                 **************************************9986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   4.1e-10   3.8e-07       1      46 [.      10      57 ..      10      72 .. 0.90
   2 !    8.7   0.0    0.0021       1.9       1      29 [.     183     211 ..     183     213 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 4.1e-10
                   EE--SHHHHHHHHHHHCC..TEEEEEE-SSSSSSGGG-EECETTCEEC CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka..gfdvlllekrdrlGGraasyevpgvrvd 46
                   IvGaGlsG  aA++L++   ++   +le+rd +GG +  +++pgvr d
     KIR61905.1 10 IVGAGLSGVGAACHLRRTcpDKTYAVLEARDAIGGTWDLFRYPGVRSD 57
                   9****************888*********************9997765 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0021
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrd 29 
                    +vG+G+++ ++  +La++ ++v+ l++++
     KIR61905.1 183 VVGSGATAVTLVPALARRAAHVTMLQRSP 211
                    8***********************99875 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   4.4e-13   4.2e-10       2     178 ..       7     214 ..       6     229 .. 0.72
   2 ?   -1.2   0.1      0.99   9.4e+02     220     237 ..     329     346 ..     313     361 .. 0.75

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 4.4e-13
                  SEEEE--SHHHHHHHHHHHH.HTS-EEEE...........E........TTHCHHHCSHHHHCHHHHHHHHHHHHH...................... CS
                  xxxxxxxxxxxxxxxxxxxx.xxxxxxxx...........x........xxxxxxxxxxxxxxxxxxxxxxxxxxx...................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq.agakvtlv...........e........legtclnggcllskallgvaedaeias...................... 57 
                  dv+++G+G  G+ aa +l++    k++ v           +        ++  ++                    +                      
   KIR61905.1   7 DVLIVGAGLSGVGAACHLRRtCPDKTYAVleardaiggtwDlfrypgvrSDSDMF--------------------Tlgysfkpwtnpraiadgesira 84 
                  89******************87888888844443333322033333344333333....................34445555555555555555668 PP

                  .........HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC..TCEEEEEESEEEE---E....EE-BCTCTTC.TTBEECCSECHHHHHHCCSS CS
                  .........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 .........evvkklnqgielllgeevvkidpgkkkvklekkke..gdeekiaydklvlAtGs....sprdlgipGvaenvgklvrtldsaealklkl 140
                                +  +i++ +++ + + d + ++ ++++ ++  g+  ++++  l++++G        ++++pGv  ++g+l     +  +  l+ 
   KIR61905.1  85 yvrdtaheyG----VDRHIRFHHRVLAARWDSATARWTVRAHRDdtGEDVTVTCAFLFVCSGYyrydAGYTPDLPGVDSYTGRL--VHPQHWPADLDH 176
                  9997744331....3445888888778888888877777777765578888899********9555555556*****9999988..777888888888 PP

                  -TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 141 lpkrivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  + +r+vvvG+G+++v l  ala+ +++vt++++ ++ +
   KIR61905.1 177 TGARVVVVGSGATAVTLVPALARRAAHVTMLQRSPTYV 214
                  8899*****************************99876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.99
                  ETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 220 ledgeeidadlvvvavGv 237
                  l +g e+ ad vv+a+G+
   KIR61905.1 329 LASGVELTADVVVTATGL 346
                  566777888888888886 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   2.1e-10     2e-07       1     197 [.       9     211 ..       9     225 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 2.1e-10
  Pyr_redox_3   1 iIiGaGPaGlaaaielkka.gledylilEkg.nignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfel 96 
                  +I+GaG  G++aa++l++    ++y +lE   +ig ++  ++      +    s+ ++++   ++ ++t+p     +  + ++ +  Y+r  a+++ +
   KIR61905.1   9 LIVGAGLSGVGAACHLRRTcPDKTYAVLEARdAIGGTWDLFRYPGVRSD----SDMFTLGY--SFKPWTNP-----RAIADGESIRAYVRDTAHEYGV 95 
                  6***************98625589*****988*****998888777744....45666664..68899999.....56788999999********998 PP

  Pyr_redox_3  97 ..piklfeeVesvkk..edegfevetske......tyeAkkviiAtGef..dkPnklnipGeek...lvkhyskvkefhkyagqkvvViGgknSavDa 179
                    +i+ +++V +     +    +v++ ++      t+++ ++++  G++  d  ++++ pG ++     +h ++ ++  + +g +vvV+G + +av  
   KIR61905.1  96 drHIRFHHRVLAARWdsATARWTVRAHRDdtgedvTVTCAFLFVCSGYYryDAGYTPDLPGVDSytgRLVHPQHWPADLDHTGARVVVVGSGATAVTL 193
                  446999****9887632567799*9877555567799**********97226678999999998423345666666556889**************** PP

  Pyr_redox_3 180 AlelvrkgaeVtvvtrgs 197
                     l+r+ a+Vt++ r+ 
   KIR61905.1 194 VPALARRAAHVTMLQRSP 211
                  **************9986 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0      0.02        19       2      37 ..       5      40 ..       4      46 .. 0.81
   2 !   20.3   0.0   2.7e-07   0.00025     109     227 ..      95     212 ..      81     219 .. 0.79
   3 ?   -2.4   0.1       2.1     2e+03     328     339 ..     334     345 ..     331     347 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.02
  K_oxygenase  2 ilDligiGiGpsnLsLailleevkkelkalflerqp 37
                 ++D+ ++G+G s ++ a++l+ +  +++  +le ++
   KIR61905.1  5 HVDVLIVGAGLSGVGAACHLRRTCPDKTYAVLEARD 40
                 679999999999999999999888888888888776 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 2.7e-07
  K_oxygenase 109 leeqvrfgeeveevepdeeeeeelltveskd.aegeeeelearnlvlgvG....tepkiPevleklegkervvHsseylerkeellakkriaVvGsGq 201
                  ++ ++rf ++v + ++d+++   ++tv+ ++ ++ge  ++++  l +  G       + P++    + + r+vH ++   +   ++++ r++VvGsG 
   KIR61905.1  95 VDRHIRFHHRVLAARWDSATA--RWTVRAHRdDTGEDVTVTCAFLFVCSGyyryDAGYTPDLPGVDSYTGRLVHPQHWPADL--DHTGARVVVVGSGA 188
                  56789*************985..57777665599*************98833222335666544444568*******99998..799*********** PP

  K_oxygenase 202 Saaeifedllrrqkkvelklvtrsea 227
                  +a  ++  l+rr++  +++++ rs+ 
   KIR61905.1 189 TAVTLVPALARRAA--HVTMLQRSPT 212
                  ***********988..7888888876 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.1
  K_oxygenase 328 tlevdavvlATG 339
                  +l++d+vv+ATG
   KIR61905.1 334 ELTADVVVTATG 345
                  5789*******9 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0026       2.5       2      34 ..       8      42 ..       7      47 .. 0.74
   2 !   16.3   0.0   1.1e-05     0.011       1      33 [.     180     212 ..     180     223 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0026
                EEEECSSHHHHHHHHHHHHTT..SEEEEEESSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelg..kkVtvversdkl 34
                v++vG+G++g+ +A+ l++    k   v+e++d +
  KIR61905.1  8 VLIVGAGLSGVGAACHLRRTCpdKTYAVLEARDAI 42
                89***************985432333666666655 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.1e-05
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdk 33 
                 +vvvvG+G +++ l  ala+ +++Vt+++rs++
  KIR61905.1 180 RVVVVGSGATAVTLVPALARRAAHVTMLQRSPT 212
                 79****************************987 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.1e-07   0.00019      18      58 ..       6      46 ..       2      61 .. 0.91
   2 ?    1.7   0.0      0.13   1.2e+02      16      49 ..     177     209 ..     170     213 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.1e-07
                EEEEEE--SHHHHHHHHHHHHC.TTS-EEEEESSSS--TTTT CS
        Thi4 18 sDvvivGaGssGLtaayylakk.pdlkvailersvspGGGaw 58
                 Dv+ivGaG sG+ aa  l +  pd   a+le++ ++GG  w
  KIR61905.1  6 VDVLIVGAGLSGVGAACHLRRTcPDKTYAVLEARDAIGGT-W 46
                7************************************874.4 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.13
                 TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4  16 aesDvvivGaGssGLtaayylakkpdlkvailer 49 
                   + vv+vG+G++ +t    la++   +v++l r
  KIR61905.1 177 TGARVVVVGSGATAVTLVPALARR-AAHVTMLQR 209
                 56779*************99*999.777777766 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.4   8.7e-07   0.00082       1      36 [.       7      45 ..       7      47 .. 0.88
   2 ?    1.2   0.1      0.24   2.3e+02     142     203 ..      76     144 ..      59     171 .. 0.72
   3 ?    5.1   1.3     0.015        14     194     307 ..     180     285 ..     156     316 .. 0.50
   4 ?    0.1   0.1       0.5   4.7e+02     181     205 ..     326     349 ..     293     385 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8.7e-07
                EEEEECTSHHHHHHHHHHHHT..T...EEEEESSSSTTSSG CS
         DAO  1 dvviiGGGiiGlstAyeLarr..g...Vtllekgdiagsga 36
                dv+i+G+G  G+++A +L rr  +    ++le++d +g g+
  KIR61905.1  7 DVLIVGAGLSGVGAACHL-RRtcPdktYAVLEARDAIG-GT 45
                8*****************.6646478********9888.76 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.24
                 EEEHHHHHHHHHHHHHHTT-..EEEESECEEEEEEEE.TCEEEEE.EECT.EEEEEEEE..EEE--GGG CS
         DAO 142 qvdpakltaalaraaealGv..eilegtevtgleeed.gkvwgve.rttp.gendaada..vVnaaGaw 203
                 ++d +   a+++++a + Gv  +i+++++v + + ++    w+v+ +  + ge +++++  + ++ G +
  KIR61905.1  76 IADGESIRAYVRDTAHEYGVdrHIRFHHRVLAARWDSaTARWTVRaHRDDtGEDVTVTCafLFVCSGYY 144
                 445554555566669999997779999999998665465559999944444766444556699998877 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.015
                 EEEEE--GGGHH.HH.HTTCTT.T.SEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSEEETTCSSTSCSHHHHHHH CS
         DAO 194 davVnaaGawsd.ll.gllkel.d.lpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtadeesgdddpevdeedidel 288
                 + vV+  Ga +  l+ +l+++  +  +++    +v++l p  +      + ++++ +   +  + v+ r+++ vl+G+     ++  + +++    + l
  KIR61905.1 180 RVVVVGSGATAVtLVpALARRAaHvTMLQRSPTYVIAL-PSRD-----VLADALRRWLPAKAAYPVV-RWKN-VLLGTAN---FQLSR-RAPTLVKRFL 266
                 55666666665433322221111112333333333333.3222.....1222222133333333333.3324.6666543...33333.5555566666 PP

                 HHHHHHHSGGGCGEEEEEE CS
         DAO 289 lealrklfPqlgdvlrkwa 307
                 ++a++ ++P+  dv r+++
  KIR61905.1 267 RRAAAGRLPAGYDVDRHFS 285
                 6666666666555555555 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.5
                 EEEEECTEEEEEEEEEEE--GGGHH CS
         DAO 181 gverttpgendaadavVnaaGawsd 205
                 g+ r ++g + +ad vV a+G+   
  KIR61905.1 326 GI-RLASGVELTADVVVTATGLDLL 349
                 33.222244424699******8743 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1    0.0008      0.75       2      22 ..       6      26 ..       5      36 .. 0.92
   2 !    7.6   0.0     0.002       1.9     109     164 ..      84     143 ..      70     145 .. 0.83
   3 ?    1.5   0.3      0.15   1.4e+02       3      35 ..     180     212 ..     178     219 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0008
                   EEEEEE--SHHHHHHHHHHHH CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLse 22
                   +dVlIVGaG++G+ +a  L++
     KIR61905.1  6 VDVLIVGAGLSGVGAACHLRR 26
                   89**************99986 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.002
                    HHHHHHHHHHT..EEETCSEEEECCEECCCCCCCEEE..ECCTTEEEEEEEEEEEE--GT CS
  FAD_binding_3 109 riLvehaeerg..lqvrfktevesleqdeegvtaevr..dketgeeetvrakYlvGaDGg 164
                     ++++ a e g    +rf+++v++ + d  + + +vr    +tge+ tv++ +l  + G+
     KIR61905.1  84 AYVRDTAHEYGvdRHIRFHHRVLAARWDSATARWTVRahRDDTGEDVTVTCAFLFVCSGY 143
                    5778888888855579************9999999994445578889*******999985 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.15
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrst 35 
                     V++VG+G + ++l   L+++   v+++ +  t
     KIR61905.1 180 RVVVVGSGATAVTLVPALARRAAHVTMLQRSPT 212
                    69*******************999**9999766 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.098        93      13      33 ..       6      26 ..       2      35 .. 0.85
   2 !   11.3   0.0   0.00028      0.27      10      49 ..     176     214 ..     171     222 .. 0.84
   3 ?   -3.2   0.0       8.6   8.1e+03      76      84 ..     337     345 ..     335     349 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.098
                  -EEEEES-SHHHHHHHHHHHC CS
  Shikimate_DH 13 kkvlliGaGemaelvakhLla 33
                    vl++GaG  +  +a hL +
    KIR61905.1  6 VDVLIVGAGLSGVGAACHLRR 26
                  679*************99976 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00028
                   .TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHH CS
  Shikimate_DH  10 lkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlera 49 
                   +++++v+++G G +a  ++ +L+++ ++ v+ + R+ + +
    KIR61905.1 176 HTGARVVVVGSGATAVTLVPALARRAAH-VTMLQRSPTYV 214
                   5689******************976665.****9998765 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 8.6
                   -SEEEE-SS CS
  Shikimate_DH  76 advvisata 84 
                   advv++at+
    KIR61905.1 337 ADVVVTATG 345
                   8******97 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0061       5.7       2      40 ..       5      43 ..       4      45 .. 0.93
   2 ?    6.0   0.0    0.0038       3.6     196     240 ..      97     142 ..      78     166 .. 0.80
   3 ?   -3.9   0.1       3.9   3.7e+03     232     246 ..     179     193 ..     175     198 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0061
         Mqo  2 kvdvvliGaGimsatlgvllkelepelsievlerldkva 40
                +vdv+++GaG+     +  l++  p+ + +vle  d+++
  KIR61905.1  5 HVDVLIVGAGLSGVGAACHLRRTCPDKTYAVLEARDAIG 43
                79*******************************999875 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0038
         Mqo 196 velklkhevkdlkre.edgkWkvkvkdlktgekkkvkakfvfiGaG 240
                  +++++h+v   + + ++ +W+v+++  +tge  +v+  f+f+ +G
  KIR61905.1  97 RHIRFHHRVLAARWDsATARWTVRAHRDDTGEDVTVTCAFLFVCSG 142
                 46788888887765415679***********************998 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 3.9
         Mqo 232 akfvfiGaGGgalkl 246
                 a++v +G+G +a++l
  KIR61905.1 179 ARVVVVGSGATAVTL 193
                 666777777777666 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       6.3     6e+03       8      17 ..       6      15 ..       2      27 .. 0.77
   2 ?   12.8   0.0   0.00012      0.12       4      40 ..     175     211 ..     173     269 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 6.3
  NAD_binding_7  8 kkvlvvGgGe 17
                     vl+vG+G 
     KIR61905.1  6 VDVLIVGAGL 15
                   579****995 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00012
  NAD_binding_7   4 dlkgkkvlvvGgGevAarkvrklleagakvtvvapev 40 
                    d +g +v+vvG G  A + v  l++  a+vt++    
     KIR61905.1 175 DHTGARVVVVGSGATAVTLVPALARRAAHVTMLQRSP 211
                    67899**************************986654 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   7.7e-05     0.073       1      37 [.       7      45 ..       7      47 .. 0.92
   2 ?   -1.4   0.6       1.2   1.1e+03       2      32 ..     181     211 ..     181     213 .. 0.92
   3 ?    2.2   0.1     0.097        91     121     161 ..     325     362 ..     297     413 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.7e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAara..GakvlLveergvlGGl 37
                  Dv++vG+g++Gv AA    r   +++ +++e r+ +GG+
    KIR61905.1  7 DVLIVGAGLSGVGAACHLRRTcpDKTYAVLEARDAIGGT 45
                  9*****************9976689999*********97 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.2
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveerg 32 
                   vvVvG+g+  v+   a ar+ a v ++++++
    KIR61905.1 181 VVVVGSGATAVTLVPALARRAAHVTMLQRSP 211
                   8***********9999999999999999986 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.097
  FAD_oxidored 121 esvtveskegrktirAkvfiDATgdGdlaalaGvpyrv.Gre 161
                   ++++++s   + +++A+v++ ATg  dl+al G+  +v Gr+
    KIR61905.1 325 TGIRLAS---GVELTADVVVTATGL-DLLALGGMTLTVdGRD 362
                   4444443...899***********9.*********9994444 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00024      0.22       1      37 [.       7      45 ..       7      48 .. 0.84
   2 ?    0.1   0.2      0.34   3.2e+02       2      30 ..     181     209 ..     180     215 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00024
                   SEEEE--SHHHHHHHHHHHH..TTT-EEEEESSSGGGSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaae..aGlkvavvekeqefgga 37
                   Dv+++G+Gl+G  AA  +++    ++ av+e  ++ gg+
     KIR61905.1  7 DVLIVGAGLSGVGAACHLRRtcPDKTYAVLEARDAIGGT 45
                   9****************9997455588888888887775 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.34
                    EEEE--SHHHHHHHHHHHHTTT-EEEEES CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvek 30 
                    v+V+GsG+   +   ++a++ + v+++  
     KIR61905.1 181 VVVVGSGATAVTLVPALARRAAHVTMLQR 209
                    9*******999988888888888877765 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0027       2.5       2      20 ..      10      28 ..       9      48 .. 0.79
   2 ?   -2.6   0.0       5.1   4.8e+03      98     138 ..      84     121 ..      69     142 .. 0.52
   3 ?    3.2   0.1     0.082        78       1      26 [.     182     202 ..     182     221 .. 0.82
   4 ?    3.7   0.1     0.057        54     134     154 ..     325     345 ..     308     347 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0027
  NAD_binding_9  2 ivGaGprGlavlerLlara 20
                   ivGaG +G+ ++ +L + +
     KIR61905.1 10 IVGAGLSGVGAACHLRRTC 28
                   9**************9987 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.1
  NAD_binding_9  98 rYlrdlfeellarlpegvtvevhra.evvdleeradgqavll 138
                    +Y+rd+++e   +     ++++h+   + + + + ++++v+ 
     KIR61905.1  84 AYVRDTAHEYGVDR----HIRFHHRvLAARWDSATARWTVRA 121
                    45555555544333....344443314444444444444443 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.082
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspl 26 
                    ++vG G+++++++ +L++ra      
     KIR61905.1 182 VVVGSGATAVTLVPALARRA-----A 202
                    69****************97.....2 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.057
  NAD_binding_9 134 qavlladgaslaadaVvLAlG 154
                      ++la+g +l+ad Vv A+G
     KIR61905.1 325 TGIRLASGVELTADVVVTATG 345
                    35899***************9 PP

>> SnoaL_4  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.0   0.00013      0.12      45     101 ..      73     128 ..      58     154 .. 0.76
   2 ?    0.1   0.0       0.9   8.5e+02      31      93 ..     137     199 ..     133     216 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00013
                 .--EESHHHHHHHHHSHHHHHH-EEEEE---EEEEET.TEEEEEEEEEEEEEETTEEE CS
     SnoaL_4  45 egvlegrdairaalrealdgfaltqHllsnplieldg.dtAtgrayllatlvrdgdgg 101
                 +  +   ++ira++r+ ++++ + +H+ +++++  +  d At+r+ + a+  rd++g+
  KIR61905.1  73 PRAIADGESIRAYVRDTAHEYGVDRHIRFHHRVLAARwDSATARWTVRAH--RDDTGE 128
                 55677899**************************9555***********9..555443 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.9
                 TEEEEEEEEETTS..--EESHHHHHHHHHSHHHHHH-EEEEE---EEEEETTEEEEEEEEEEE CS
     SnoaL_4  31 lFtedavvdytgvgegvlegrdairaalrealdgfaltqHllsnplieldgdtAtgrayllat 93 
                 lF+  ++++y+++ +  l g+d++   l++  + +a+ +H     ++   g tA     +la 
  KIR61905.1 137 LFVCSGYYRYDAGYTPDLPGVDSYTGRLVHPQHWPADLDHTGARVVVVGSGATAVTLVPALAR 199
                 677788888886435566666666666666555555888887777777699888877766665 PP

>> DUF3601  Domain of unknown function (DUF3601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00025      0.23      13      45 ..     119     151 ..     115     159 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00025
     DUF3601  13 iksFkDykGfehqaGEklyflgveslkyeaGfv 45 
                 +++ +D+ G +  +   + f+++ +++y+aG++
  KIR61905.1 119 VRAHRDDTGEDVTVTCAFLFVCSGYYRYDAGYT 151
                 6789****************************8 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0     9e-05     0.085      33      92 ..      76     138 ..      33     142 .. 0.81
   2 ?   -1.4   0.1       4.1   3.8e+03      61      76 ..     298     313 ..     238     345 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9e-05
                 EESHHHHHHHHHHHHH.HEEEEEEEEEEE..EEETTEEEEEEEEEEEEETTSSEEEEEEEEEE CS
     SnoaL_2  33 lrGreairaffralfa.afpdlrfeihdv..vadgdrvavewtvtgtipatgrgvtvrgvdvf 92 
                 +   e ira++r        d+++++h+   +a  d + ++wtv++++  tg+ vtv+++ +f
  KIR61905.1  76 IADGESIRAYVRDTAHeYGVDRHIRFHHRvlAARWDSATARWTVRAHRDDTGEDVTVTCAFLF 138
                 44557888888877765667899998888778888**********************999887 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 4.1
                 EEETTEEEEEEEEEEE CS
     SnoaL_2  61 vadgdrvavewtvtgt 76 
                 + dgd  a+ +t ++ 
  KIR61905.1 298 APDGDLFAALGTGRAD 313
                 4455555555555444 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.003       2.9       1      20 [.       7      26 ..       7      33 .. 0.91
   2 ?   -1.7   0.0       1.3   1.2e+03       2      37 ..     181     216 ..     180     221 .. 0.84
   3 ?    0.8   0.1      0.21     2e+02     116     150 ..     317     346 ..     310     368 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.003
                CEEEE-SSHHHHHHHHHHHH CS
        GIDA  1 dviViGgGhAGceAAlaaar 20
                dv ++G+G++G+ AA ++ r
  KIR61905.1  7 DVLIVGAGLSGVGAACHLRR 26
                799************98876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.3
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT- CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLithkldtiae 37 
                 v+V+G G   +    a+ar+ a+v++++ +   ++ 
  KIR61905.1 181 VVVVGSGATAVTLVPALARRAAHVTMLQRSPTYVIA 216
                 99******9999999*********999776666655 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.21
                 S-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 116 eeveeliveekkvkgvvtedgetikakavviatGt 150
                 ++++   +     +g+++++g +++a++vv atG 
  KIR61905.1 317 DRIDTFTP-----TGIRLASGVELTADVVVTATGL 346
                 55555555.....89*******************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 3157.51
//
Query:       KIR61906.1  [L=283]
Description: hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-22   78.7  23.7    1.1e-21   78.5  23.7    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    9.1e-22   77.9   0.1      1e-19   71.2   0.1    2.1  1  Abhydrolase_1  alpha/beta hydrolase fold
    1.4e-14   54.0   0.8    2.6e-14   53.1   0.8    1.4  1  Hydrolase_4    Serine aminopeptidase, S33
    8.2e-10   39.2   0.1    1.6e-09   38.2   0.1    1.5  1  Thioesterase   Thioesterase domain
     0.0066   16.2   0.0       0.54   10.0   0.0    2.2  2  Abhydrolase_5  Alpha/beta hydrolase family
  ------ inclusion threshold ------
       0.19   11.3   0.1       0.58    9.7   0.1    1.7  2  Esterase       Putative esterase


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5  23.7   3.6e-25   1.1e-21       1     218 [.      27     269 ..      27     271 .. 0.60

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 3.6e-25
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTST..S-GGCS--HHHCHHH.HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC....... CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhG..rsdpppldledladl.aalldelaagggpvvlvGHSlGGalalaaapla.....lv 88 
                    v+llHG g +  ++  a+L+ +la++++v+++Dl GhG   + + p++l++la+  a+ ld+l+ ++gp++lvG+SlGGa+a++   la     +v
     KIR61906.1  27 VVLLHGIGRTLADF--AELHGRLARDHRVISLDLAGHGgsAPLDEPHTLPALARAaADCLDALG-VPGPAHLVGNSLGGAVAMR---LAvddpaRV 116
                    8*****99654445..5**9999***999********834446666888886666588888888.99*****************...444448777 PP

                    EE.EEES-..----TTT.........S----TTHHHHHHTT-C....CCCHCCH.....S-HSCCCCHHH.C........CCCHCHCCCGHHHHCC CS
  Abhydrolase_6  89 vg.vlldppptalpagl.........laaalelllallallrl....lawlsre.....plprlfladed.a........daawrarlarlaalla 156
                    ++ vl+++   a+  ++         ++++++lll++ ++ ++    + ++ r+          + + ++ a         ++ +a l +++  +a
     KIR61906.1 117 ASlVLVAS---AGFGREvtiglrllaVRPLARLLLRPSRAVARrterALFHDRRhvtaaR----LAEALAvArrphaarvMRELVASLGTVRGVAA 205
                    77999999...4444443433332333333333333333222222333333322321121....22211110111111222333333333334444 PP

                    HHCHTTCCHHTT-TTGCEEEC.TT-CHHHHC.HHCCCH.STTEEETCE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 157 glgllpaaawadlpvpllvlg.geDplvprl.lerlla.qagarlpvvlpgaGHlphleepdeva 218
                    ++ +  ++a+a+l  p+lv++ ++D ++p+  l+++ a +++ar+ ++++++GHlp++e+++e+ 
     KIR61906.1 206 PWRQELLDAVARLDLPVLVVWgDRDLILPAVhLDAARArLPRART-HLFADTGHLPQIERAEEFH 269
                    555556888888888888886488886664413344446699999.************9999986 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.1   3.4e-23     1e-19       1     256 [.      25     264 ..      25     265 .. 0.74

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 3.4e-23
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEE.EEEETHHHHHHHHHHHHHG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddklt.lvGhSmGGmialayaaeyp 95 
                    p++v+lhG++ ++  +ae  l   La+ +++vi lDl G+g S p  ++  ++ +   +a+     ldalg+  ++ lvG S+GG++a+ +a + p
     KIR61906.1  25 PPVVLLHGIGRTLADFAE--LHGRLAR-DHRVISLDLAGHGGSAPLDEP--HTLPA--LARAAADCLDALGVPGPAhLVGNSLGGAVAMRLAVDDP 113
                    89****************..******9.***************888887..76666..99999999********999******************* PP

                    GGEEEEEEESE....CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHH.HHHHHCHHHHHHHH CS
  Abhydrolase_1  96 erVkalvllga....idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfps.sgsdnasslatgal 186
                     rV++lvl+++     +  + l+ ++ + ++++     + +a  ++ ++     +  aa + +         ++ + r+p   + +++   + g +
     KIR61906.1 114 ARVASLVLVASagfgREVTIGLRLLAVRPLARLLLRPSRAVARRTERALFHDRRHVTAARLAE---------ALAVARRPHaARVMRELVASLGTV 200
                    ***********7766666666666666666666666555555444433322222222222222.........333333333144444444444444 PP

                    HHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 187 ksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafleg 256
                      +  +          rl+       p+lv++g+ D + p  +l+  ++ lp++r + ++d+gHl ++e+
     KIR61906.1 201 RGVAAPWRQELLDAVARLDL------PVLVVWGDRDLILPAVHLDAARARLPRARTHLFADTGHLPQIER 264
                    44444444444444445555......*****************************************997 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.8   8.6e-18   2.6e-14       7     233 ..      27     259 ..      25     265 .. 0.66

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 8.6e-18
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse..gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkva 102
                  vvl+HG++ +   +ael  +La+ +  v+ lD  GhG s+   +   +p + +  +D+  +   +  +    p  l+G S+GG++a++++ + p++va
   KIR61906.1  27 VVLLHGIGRTLADFAELHGRLAR-DHRVISLDLAGHGGSAplDEPHTLPALARAAADCLDA---LGVP---GPAHLVGNSLGGAVAMRLAVDDPARVA 117
                  9********************85.789************9654555566666666666444...4533...3778*********************** PP

  Hydrolase_4 103 glilsaPalkikakl.....k.appllklllkllgkllpklqvsnnlkadslsrdpevva..ayeadplv.hgkitvrlllelldamkrleeraakit 191
                   l+l+a+a   ++ +       ++pl++ll      l p+  v ++   + l +d+++v   ++++   v ++   +r+++el+  + +++  aa ++
   KIR61906.1 118 SLVLVASAGFGREVTiglrlLaVRPLARLL------LRPSRAV-ARRTERALFHDRRHVTaaRLAEALAVaRRPHAARVMRELVASLGTVRGVAAPWR 208
                  ********7776543333331233333332......2355555.333444444444444311223333334455556666666666655555555555 PP

  Hydrolase_4 192 ...........lPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHe 233
                             lP+l++ G++D + +     ++ +rl+  + + +l++   H 
   KIR61906.1 209 qelldavarldLPVLVVWGDRDLILPAVHLDAARARLP--RARTHLFADTGHL 259
                  55555555555************999766666666666..5677777766665 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1   5.5e-13   1.6e-09       2      84 ..      26     109 ..      25     125 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 5.5e-13
                   EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST..SHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHH CS
  Thioesterase   2 pLflfppagGsasvfrslasklsdpvvevlavqlpgre..rdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevA 84 
                   p++l++++g   + f+ l+ +l ++  +v+ + l+g++   +  +++++ +la   a++l +    gP +l+G SlGg++A+++A
    KIR61906.1  26 PVVLLHGIGRTLADFAELHGRLARD-HRVISLDLAGHGgsAPLDEPHTLPALARAAADCLDALGVPGPAHLVGNSLGGAVAMRLA 109
                   899*********************8.***********999999999*************************************99 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00018      0.54      61      90 ..      95     125 ..      67     156 .. 0.86
   2 ?    4.0   0.0     0.012        37      95     134 ..     214     253 ..     203     261 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00018
  Abhydrolase_5  61 vgGhslGGvvasrfaaee.ekiegvvflasY 90 
                    + G slGG+va r+a ++  ++ ++v++as 
     KIR61906.1  95 LVGNSLGGAVAMRLAVDDpARVASLVLVASA 125
                    5799************9955********995 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.012
  Abhydrolase_5  95 elselskkvlsivgteDgvlnvkslekakkflpkdtkvvs 134
                     + +l  +vl ++g++D +l+  +l+ a+ +lp+  + ++
     KIR61906.1 214 AVARLDLPVLVVWGDRDLILPAVHLDAARARLPRARTHLF 253
                    56677899*************************9877655 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00019      0.58     117     144 ..      93     120 ..      71     129 .. 0.83
   2 ?   -2.6   0.0       1.2   3.5e+03     237     250 ..     204     217 ..     164     218 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00019
                 EEEEEETHHHHHHHHHHHCSTTTCCEEE CS
    Esterase 117 ravaGqSmGGlgALilalkhpdrFgsvs 144
                   ++G S+GG +A+ la++ p r +s  
  KIR61906.1  93 AHLVGNSLGGAVAMRLAVDDPARVASLV 120
                 569******************9987755 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.2
                 HHHHHHHHHHCHHH CS
    Esterase 237 weyWraqLiaalad 250
                  ++Wr++L +a+a+
  KIR61906.1 204 AAPWRQELLDAVAR 217
                 45688888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1936.36
//
Query:       KIR61907.1  [L=483]
Description: deoxyribodipyrimidine photolyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-14   53.5   0.0    4.9e-13   49.4   0.0    2.3  1  DPRP      Deoxyribodipyrimidine photo-lyase-related protein


Domain annotation for each model (and alignments):
>> DPRP  Deoxyribodipyrimidine photo-lyase-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   2.8e-17   4.9e-13       2     159 ..       6     142 ..       5     149 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 2.8e-17
                 E--TT---TT-HHHCT--TTT-EEEEE--HCCCCSTTS-HHHHHHHHHHHHHHHHHHHHTT-EEEEE-TT-TT--SHHHHHHHHHHHH--SEEEEE--S CS
        DPRP   2 lilgdqLskehsalkeadkkedrvlliEsaqeatyvrhHkqKlvlifaaMrhFaeeLrekgvevtylelddkenesleeelealleelkieelevtepd 100
                 ++l dqL ++   l++a    ++vll+E+++ ++++++H+qK  l+++a+rh a+eL ++ + v+   +d     ++ ++le++        +ev++p 
  KIR61907.1   6 WLLADQLGPH--FLDDA---AQPVLLVEARELFRRRPMHRQKAHLLLSALRHRAAELGDRALLVR---AD-----TFRQALERV-----DGPVEVCHPP 86 
                 7888888764..44444...68***********************************99977765...55.....344455544.....356999**** PP

                 SHHHHHHHHCHHHHCTSEEEEE--TTSSS-HHHHHHHHC..C-SS--HHHHHHHHHHHHTT CS
        DPRP 101 dkrleqrleelaeklelevevledehFltsreefkewak..grkklrmedFYremRkrlgi 159
                  +  ++  +++    +l+v  l+ + Fl++re+f++wa+  +r  lr  dFYr+ R+++g+
  KIR61907.1  87 SRAGLAFARSV---PGLTV--LPPRGFLVRREDFAAWADadRRGPLRVSDFYRWARREHGV 142
                 **999999998...78999..*****************96566789*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 3127.45
//
Query:       KIR61908.1  [L=362]
Description: alcohol dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-27   95.3   1.7    1.9e-27   95.3   1.7    2.1  2  ADH_N          Alcohol dehydrogenase GroES-like domain
    6.2e-27   94.1   0.0    1.1e-26   93.4   0.0    1.4  1  ADH_zinc_N     Zinc-binding dehydrogenase
    1.8e-08   34.1   2.3    1.1e-06   28.3   0.8    2.5  2  Glu_dehyd_C    Glucose dehydrogenase C-terminus
    3.7e-07   31.2   0.0    6.9e-07   30.4   0.0    1.5  1  ADH_zinc_N_2   Zinc-binding dehydrogenase
     0.0064   16.7   0.1      0.013   15.8   0.1    1.5  1  TrkA_N         TrkA-N domain
  ------ inclusion threshold ------
      0.023   15.3   0.3      0.023   15.3   0.3    2.0  2  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
      0.067   12.5   0.8       0.12   11.7   0.8    1.4  1  ThiF           ThiF family
        1.8    7.8  12.0       0.33   10.2   6.5    2.0  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   1.7   8.5e-31   1.9e-27       1     109 []      29     148 ..      29     148 .. 0.88
   2 ?   -1.3   0.7      0.86   1.9e+03      30      66 ..     152     187 ..     149     210 .. 0.79

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 8.5e-31
                 TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-............TTBEET CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlC............eeakll 87 
                 pge++++v+a+g+C++Dlh+ +gg  ++ ++p+ lGHE++G+ve+vg++v++++ Gd Vv+++   cg C+aC++g++ +C            +     
  KIR61908.1  29 PGEAVVRVQACGVCHTDLHYREGG--INDEFPFLLGHEAAGIVEQVGDGVTDVAPGDFVVLNWRAVCGVCRACRRGRPWYCfathnaaqkmtlT----- 120
                 5899*******************6..*******************************************************9877655444332..... PP

                 TTS........S-SSSBSEEEECGGGEEEE CS
       ADH_N  88 gvs........ldGgfaeyvvvpekklvkl 109
                   +          G+fae+++v++ ++ k+
  KIR61908.1 121 --DgtvlspalGIGAFAEKTLVHAGQCTKV 148
                 ..145666667789*********9999876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.86
                 SSSEE---EEEEEEEEESTT-CS..--TT-EEEE-SEEE CS
       ADH_N  30 klplilGHEivGeveevgpevkk..lkvGdrVvveplis 66 
                 + p ++G   +G+ + +g ++++  ++ Gd V+v   i 
  KIR61908.1 152 ARPAAVGLLGCGVMAGLGAAMNTggVTRGDSVAV---IG 187
                 5677777778899999998888778999999998...33 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.0   4.8e-30   1.1e-26       1     126 [.     190     320 ..     190     324 .. 0.94

  Alignments for each domain:
  == domain 1  score: 93.4 bits;  conditional E-value: 4.8e-30
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC..TSSEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg..gkgeee 96 
                 gvG aav+ A  +Ga +++avd +++kl+ a+++Ga++++n++e+d+ve+i+++tgg g+dvv+++vG ++t+++a+ + +  G++v+vG+  +++  e
  KIR61908.1 190 GVGDAAVAGAVLAGAtTIVAVDTDSRKLDWARRFGATHTVNASEDDPVEAIRAATGGFGADVVIDAVGRPETWKQAFYARDLAGTVVLVGVptPQMSVE 288
                 8**************99999**********************776**********************************************99999999 PP

                 EEHHHHHHTT-EEEEE-SSC..HHHHHHHHHH CS
  ADH_zinc_N  97 fdlrnlllkeksilGsllgs..lreefkeald 126
                 ++l +++ +   ++ s++g+  ++++f+ + +
  KIR61908.1 289 LPLLDVFGRGGALKSSWYGDclPSRDFPLLTE 320
                 *******************9877777775555 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.8   4.9e-10   1.1e-06      31     139 ..     180     288 ..     166     295 .. 0.81
   2 !    4.8   0.0    0.0076        17     182     203 ..     329     350 ..     319     361 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 4.9e-10
  Glu_dehyd_C  31 pesalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYv..dsretpvdeipeasee..mdlvvEaTGsakhafeaiealapn 124
                   +s+ v+G G +G  a+a   +   g +++      d++++++d  ++ Gat     s+ +pv+ i +a+     d+v++a G ++   +a  a + +
   KIR61908.1 180 GDSVAVIGCGGVGDAAVAGAVL--AGATTIVA---VDTDSRKLDWARRFGATHTvnASEDDPVEAIRAATGGfgADVVIDAVGRPETWKQAFYARDLA 272
                  57999********888765554..45554433...467999**********9853357889*****999875226*********************** PP

  Glu_dehyd_C 125 GvaaLlGvpeds.eve 139
                  G ++L+Gvp+++ +ve
   KIR61908.1 273 GTVVLVGVPTPQmSVE 288
                  *********9874665 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0076
  Glu_dehyd_C 182 ldelvtkvvdldeleeAfeddd 203
                  ld++vt+++ ld++eeAf++ +
   KIR61908.1 329 LDAFVTEEIALDQVEEAFTRMH 350
                  799***************8765 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   3.1e-10   6.9e-07       2     126 ..     224     353 ..     223     360 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 3.1e-10
                   T-SEEEETT.STTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----...S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHH CS
  ADH_zinc_N_2   2 GAdevidyr.tedfe...aatggegvDvvldtvggealleaslkvlpggGrlvsiggpp..lsaallkpakkrkgrsvkyeflfsmkasaqadilee 92 
                   GA++ ++   ++ +e   aatgg g Dvv+d+vg +++ ++++ + +  G++v +g p   +s +l+ +  + +g+++k +++ +  +s  +d +  
    KIR61908.1 224 GATHTVNASeDDPVEairAATGGFGADVVIDAVGRPETWKQAFYARDLAGTVVLVGVPTpqMSVELPLLDVFGRGGALKSSWYGDCLPS--RD-FPL 317
                   9*****7776777779989***************777758887444667**99998444589********99************98887..78.999 PP

                   HHHHHHHHH..----EEEEEEGGGHHHHHHHHHSS- CS
  ADH_zinc_N_2  93 laalieeGk..lrpvvdrvfpleeaaeAhrylesgr 126
                   l++l+ +G+  l   v+++  l+++ eA+ ++++g 
    KIR61908.1 318 LTELYLQGRldLDAFVTEEIALDQVEEAFTRMHHGD 353
                   *********666699*****************9986 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   5.7e-06     0.013       1      52 [.     183     236 ..     183     269 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.7e-06
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTT.SEEEES-TTSH CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeg.levvvgdatde 52 
                 +++iG+G vG + +      g   +v++d+d ++++ +r+ g +++v+++  d+
  KIR61908.1 183 VAVIGCGGVGDAAVAGAVLaGATTIVAVDTDSRKLDWARRFGaTHTVNASEDDP 236
                 68********87665555537778***************999777888876665 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.7       4.9   1.1e+04       2      12 ..     157     167 ..     156     175 .. 0.85
   2 ?   15.3   0.3     1e-05     0.023       2      69 ..     183     256 ..     182     285 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.9
                    EEEETTSHHHH CS
  F420_oxidored   2 igiiGaGnmge 12 
                    +g++G+G m+ 
     KIR61908.1 157 VGLLGCGVMAG 167
                    799****9985 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1e-05
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC....-EEECECHHHHHH......H-SEEEE-S CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg....vkvtavdneeaae......eadvvvlav 69 
                    +++iG+G +g a + g++ ag  ++ iv a   + ++   +a+++g    v++++ d  ea++       advv+ av
     KIR61908.1 183 VAVIGCGGVGDAAVAGAVLAG--ATTIV-A-VDTDSRKLDWARRFGathtVNASEDDPVEAIRaatggfGADVVIDAV 256
                    89*******************..55555.7.55555555778888877779999999999988444444566666666 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.8   5.5e-05      0.12      20      52 ..     182     214 ..     177     258 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.5e-05
                 EEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  20 kvllvGaGglGsellknLalsGvgkltlvDnDk 52 
                 +v+++G+Gg+G  ++   +l+G   +  vD D 
  KIR61908.1 182 SVAVIGCGGVGDAAVAGAVLAGATTIVAVDTDS 214
                 79*****************************96 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   1.7      0.19   4.3e+02      24      45 ..     150     172 ..     128     177 .. 0.71
   2 ?   10.2   6.5   0.00015      0.33      18      89 ..     172     240 ..     166     261 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.19
                  TCB---EEEEESTSH.HHHHHHH CS
  AlaDh_PNT_C  24 pgvepakvlviGgGv.aGlqAia 45 
                  p ++pa v  +G Gv aGl A+ 
   KIR61908.1 150 PAARPAAVGLLGCGVmAGLGAAM 172
                  2357999*******968888875 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00015
                  ETTCEETCB---EEEEESTSHHHHHHHHHHHHTT-E.EEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHH CS
  AlaDh_PNT_C  18 tlaGgvpgvepakvlviGgGvaGlqAiatakglgak.VtvlDvrparleqleslgakfvevlksqeellaeav 89 
                  +  Ggv+  +   v viG G +G +A+a a+  ga+ ++++D+++++l   + +ga+  +v +s+ + ++ a+
   KIR61908.1 172 MNTGGVT--RGDSVAVIGCGGVGDAAVAGAVLAGATtIVAVDTDSRKLDWARRFGAT-HTVNASEDDPVE-AI 240
                  4567777..6678*********************9725789************9999.555444443333.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.57
# Mc/sec: 1911.90
//
Query:       KIR61909.1  [L=209]
Description: beta-lactamase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-22   80.6  12.2      2e-22   80.2  12.2    1.1  1  Lactamase_B    Metallo-beta-lactamase superfamily
  ------ inclusion threshold ------
      0.025   14.1   2.8      0.042   13.4   2.8    1.4  1  Lactamase_B_2  Beta-lactamase superfamily domain
      0.064   13.6   0.1       0.19   12.1   0.0    1.9  2  ATXN-1_C       Capicua transcriptional repressor modulator
      0.069   13.0   0.4       0.17   11.7   0.1    1.7  2  Lactamase_B_3  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2  12.2   4.4e-26     2e-22       6     197 .]      25     188 ..      21     188 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 4.4e-26
                  SEEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTCHCG CS
  Lactamase_B   6 vnsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllagvsa 103
                   n+++i +d +++++D+  + +a +       + +++++v a++ TH+H DH+  ++ l++at++pv  ++++   + m ++               +
   KIR61909.1  25 NNVWVIGDDSECVVVDAPHDVDAIL-------RTVGGRRVVAILATHAHDDHVRVAPQLARATGAPVLLHPDDRVLWDMVHP---------------D 100
                  69***********************.......68************************************************...............4 PP

                  CCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHHHHHCHSEEEE.SS CS
  Lactamase_B 104 dkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridltlrgaevrdpsdaekyldsllklaglkaevlvp.gH 197
                   +pd  + ++++ +  + +l v ++pgh++g  +++++  +v+ftGD+l+ag  g +++    ++  ++ + e+ +   ++l++l++e++v  gH
   KIR61909.1 101 AAPDGELRDGATVEVAGTELRVLHTPGHSPGACSLHAPQLGVVFTGDTLFAGGPGATGR----SYSDFGTIIESIR---TRLFTLPPETVVHtGH 188
                  5799*******************************************************....6777777777666...8999********9999 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.8   9.4e-06     0.042      29     137 ..      55     148 ..      36     175 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.4e-06
                    .SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-TTSEEEECSTTEEEEEEEE-EE--CTCCE-TTT CS
  Lactamase_B_2  29 ppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleeepavnvheldwgesfelgdggleitatparhksgrrldrnagd 124
                    +++ a+l thaH DH+  ++ l++ ++  +p++ +++  +vl +  +++a +        el  g ++e+++++l++  tp ++ ++    + + +
     KIR61909.1  55 RRVVAILATHAHDDHVRVAPQLARATG--APVLLHPDD-RVLWDMVHPDAAPD------GELRDGATVEVAGTELRVLHTPGHSPGAC---SLHAP 138
                    5899********************544..667655442.22223322333333......36899999999866555555554444444...77778 PP

                    SEEEEEECTTEEE CS
  Lactamase_B_2 125 tlGlriegggkrv 137
                     lG++++g     
     KIR61909.1 139 QLGVVFTG---DT 148
                    88888883...33 PP

>> ATXN-1_C  Capicua transcriptional repressor modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.5   1.1e+04      12      24 ..     126     139 ..     122     142 .. 0.60
   2 ?   12.1   0.0   4.2e-05      0.19      30      52 ..     169     191 ..     149     195 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.5
    ATXN-1_C  12 ssls.sslSfalpp 24 
                 +  s  ++S+  p+
  KIR61909.1 126 PGHSpGACSLHAPQ 139
                 55566677765554 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4.2e-05
    ATXN-1_C  30 dslKaaVatlsPhtVIqTThnas 52 
                 +s++    tl+P tV++T h  s
  KIR61909.1 169 ESIRTRLFTLPPETVVHTGHGDS 191
                 77888889***********9655 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.9e-05      0.17       6      82 ..      24     124 ..      22     152 .. 0.63
   2 ?   -1.3   0.0       0.4   1.8e+03     106     116 ..     181     191 ..     173     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.9e-05
  Lactamase_B_3   6 ghnsflletagarilvDPfka..nlgyeppaeeaDlvlisqaledHahletlkqlaenvkvlee......................geslevggle 77 
                    + n +++ ++   ++vD  +    +  +   +++ ++l ++a++dH ++++  + a+ ++vl +                      g+++ev+g+e
     KIR61909.1  24 DNNVWVIGDDSECVVVDAPHDvdAILRTVGGRRVVAILATHAHDDHVRVAPQLARATGAPVLLHpddrvlwdmvhpdaapdgelrdGATVEVAGTE 119
                    67888898888888888554324444444559999***********99875444345555555524444444444444444333334445555555 PP

  Lactamase_B_3  78 irava 82 
                    +r  +
     KIR61909.1 120 LRVLH 124
                    55544 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.4
  Lactamase_B_3 106 ltiyhlGhlah 116
                     t++h Gh++ 
     KIR61909.1 181 ETVVHTGHGDS 191
                    68999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.38s 00:00:00.97 Elapsed: 00:00:00.57
# Mc/sec: 1099.21
//
Query:       KIR61910.1  [L=281]
Description: hypothetical protein TK50_31200 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-37  129.0   0.3    1.6e-36  125.6   0.2    2.1  2  MEDS      MEDS: MEthanogen/methylotroph, DcmR Sensory domain
    2.7e-07   30.8   5.7    2.7e-07   30.8   5.7    2.8  3  STAS_2    STAS domain
    2.2e-05   24.0   0.0    4.4e-05   23.1   0.0    1.5  1  STAS      STAS domain


Domain annotation for each model (and alignments):
>> MEDS  MEDS: MEthanogen/methylotroph, DcmR Sensory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.2   2.6e-40   1.6e-36       1     161 []      14     174 ..      14     174 .. 0.99
   2 ?    1.3   0.0     0.046   2.7e+02      86     114 ..     184     212 ..     178     232 .. 0.77

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 2.6e-40
        MEDS   1 dHvclfyedeeellealvpfikaglargekvlyvasastldelrealrkagldvdaalesgqleildaeetylrgggfdpermlealrralakaladgy 99 
                 dHvc+f +de + l+a+ +f +agl+ g++v+++++a + +++r+  ++ g ++  a  +g+l+i+++   yl+gg+f+per+++al++++a a ++g+
  KIR61910.1  14 DHVCWFHDDETDGLDAVGRFAAAGLRLGHRVVCFLDALSAEDVRASAARHGAAPGPAPHAGELRIVPCGYSYLAGGRFRPERVVDALAAEIASAHREGH 112
                 8************************************************************************************************** PP

        MEDS 100 aglrvigemtwalrspaereelleyEallneliadepvtalClYdrrrfsaevladvlrtHp 161
                 +g+r++g+m wa r++ + + l +yEa +++l+ d ++++lClYdrr fs e  + +++ Hp
  KIR61910.1 113 PGVRLVGDMAWAARRQVGIDTLRRYEAAASALFLDGRAAGLCLYDRRIFSTEWCQAMMSAHP 174
                 *************************************************************8 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.046
        MEDS  86 alrralakaladgyaglrvigemtwalrs 114
                 ++   l++++ +  aglr++g+++   r+
  KIR61910.1 184 RWTPLLRAHRTADPAGLRLVGQVDRSNRD 212
                 678888888877789********965554 PP

>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2      0.94   5.6e+03      57      57 ..      40      40 ..      26      66 .. 0.55
   2 ?   -1.4   0.3      0.51     3e+03      26      26 ..     126     126 ..      90     152 .. 0.57
   3 !   30.8   5.7   4.5e-11   2.7e-07       1      77 [.     200     273 ..     200     275 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.94
      STAS_2 57 r 57
                 
  KIR61910.1 40 L 40
                2 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.51
      STAS_2  26 g 26 
                 +
  KIR61910.1 126 R 126
                 2 PP

  == domain 3  score: 30.8 bits;  conditional E-value: 4.5e-11
      STAS_2   1 LsLsGeldldtaaelreqlleal...aagaevvvDlsgvervDsaalalLlalartarargrrlvlrglppalrrlldly 77 
                 L+L G +d+++ +++ + l+++    +a+++vv+Dlsg+ +vD+  +a L+++        r+++l+g +p+l+rll+l+
  KIR61910.1 200 LRLVGQVDRSNRDAFAALLAAVTeetPARQPVVLDLSGLSFVDVRSAATLVRAGP------RGVRLVGCRPGLARLLELV 273
                 89*****************99999876668***************9999999985......89***************97 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   7.3e-09   4.4e-05      13      71 ..     200     251 ..     190     281 .] 0.87

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 7.3e-09
                 EEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHH CS
        STAS  13 lrldgpidfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLke 71 
                 lrl g++d  n + f   l  +++e+p       + ++++ldls++sf+D+ ++++L++
  KIR61910.1 200 LRLVGQVDRSNRDAFAALLAAVTEETP-------ARQPVVLDLSGLSFVDVRSAATLVR 251
                 89************************9.......679******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.52
# Mc/sec: 1618.97
//
Query:       KIR61911.1  [L=471]
Description: xylulose kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-34  118.3   0.0    8.1e-34  117.3   0.0    1.5  1  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom
    1.6e-25   90.0   2.3    2.7e-25   89.3   2.3    1.4  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
  ------ inclusion threshold ------
       0.21    9.7   0.0        0.3    9.2   0.0    1.1  1  HSP70     Hsp70 protein


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   0.0   1.3e-37   8.1e-34       2     225 ..       4     228 ..       3     238 .. 0.89

  Alignments for each domain:
  == domain 1  score: 117.3 bits;  conditional E-value: 1.3e-37
                 EEEEEEESSEEEEEEEE.TTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEESSEEE-TT CS
      FGGY_N   2 ilglDcGttstkaivld.ekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpLynailwk 99 
                 + g+D +t+s k++v d e+g++v  ++a++++ ++        p+++ +ala+a++ ++       ++++a +i+gq++g+v lD ++ +++ a+lw+
  KIR61911.1   4 VAGVDSSTQSCKVVVRDaETGRLVREGRAPHPAGTA------VPPAAWEAALADAVARAGGL-----DDVAAASIAGQQQGMVCLDADGAVVRDAVLWN 91 
                 789**************************9998888......55888888888888887755.....59****************************** PP

                 --TTHHHHHHHHH.....TTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT.....--EEEHHHHCTTTSEETTTTEE CS
      FGGY_N 100 drrtaeiveklke.....egnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtg.....qfvtdvtnasesmlfnikklew 188
                 d+r+a  +  l       e +  +++e  glv  ++ft++kl+Wl+  ep  +++++++ l++d+L+wrL+g     +  td+++as+++++  +++ +
  KIR61911.1  92 DTRSADAAADLISdlgggEAGRRAWAEAVGLVPVASFTVTKLRWLASAEPRNAARTAAVCLPHDWLTWRLSGapgldALRTDRSEASGTGYWSAATGGY 190
                 *****9999888754444456789****************************************************99********************* PP

                 -HHHHH.HTT--GGGS-EEE-TCCEEEEEECCCCCCTT CS
      FGGY_N 189 deella.ilgipeelLPklvesseiigelkpelaaklG 225
                  + l+  ++g +  lLP+++ ++  +g l++ +   +G
  KIR61911.1 191 RQDLFGlAFGRDDVLLPQVLAPTGRAGRLRTGAPLGAG 228
                 ****9735788888*************99987665554 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   2.3   4.5e-29   2.7e-25       2     197 ..     247     429 ..     246     430 .. 0.85

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 4.5e-29
      FGGY_C   2 kvslGTssflllvgtkpvisehglltpvagedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpafsglra 100
                  vs+GTs ++ +v++ p  +  g+ + +a  d+ + ++   ++  a  +++     l    ++++ag   + la    ++a a a g+v+vp++ g+r+
  KIR61911.1 247 IVSIGTSGIVSTVSDVPTADPSGIVAGFA--DATGRFLPLVCTLNAARVLDAAAAML----RVDHAGL--SALA----LSAPAGADGLVLVPYLEGERT 333
                 5899*************************..44455555445555555533333332....2333333..3444....6999***************** PP

      FGGY_C 101 pywdpdargtitglssstt.lahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilAava 197
                 p+ +p+a g++ gl+ +t+ +ah+arAa+e+   +l+++l+++ ++ g  +dr++++GGg++++++++++  ++g+pV +p++ e +a GaA  Aa++
  KIR61911.1 334 PN-RPHATGAVHGLTLRTStPAHLARAAVEGMLCALADGLDTMLAQ-GTTVDRVILVGGGAHSEAVRRIAPAVFGRPVLVPPPGEYVADGAARQAAWT 429
                 *5.**************999**************************.*************************************************96 PP

>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0     5e-05       0.3     322     373 ..     377     427 ..     350     436 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 5e-05
                 EEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHH CS
       HSP70 322 lkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqag 373
                  +   +d v+lvGG +   +v+ +   +fg++      p e va GAA qa+
  KIR61911.1 377 AQGTTVDRVILVGGGAHSEAVRRIAPAVFGRPVLV-PPPGEYVADGAARQAA 427
                 446789************************98765.589***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3574.54
//
Query:       KIR61912.1  [L=234]
Description: hypothetical protein TK50_31215 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1712.97
//
Query:       KIR61913.1  [L=102]
Description: hypothetical protein TK50_31220 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.015   15.4   0.0      0.026   14.7   0.0    1.4  1  MazG      MazG nucleotide pyrophosphohydrolase domain
       0.09   12.9   0.1       0.12   12.5   0.1    1.2  1  DUF2597   Protein of unknown function (DUF2597)
        0.1   13.1   0.1       0.14   12.6   0.1    1.3  1  PRA-PH    Phosphoribosyl-ATP pyrophosphohydrolase


Domain annotation for each model (and alignments):
>> MazG  MazG nucleotide pyrophosphohydrolase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.3e-06     0.026       8      69 ..      32     100 ..      26     102 .] 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.3e-06
                 HHHHHHHHHHHHHHHT...........T-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH CS
        MazG   8 aylleEvgEvaeaIkk...........edrdeleeELGDvLlqvlflaniaeeeggidledvaetileKlerR 69 
                 + l+eE+gE a a              + rd+++ EL+Dv + +l  +++    +g d   ++ +  eK++ R
  KIR61913.1  32 LKLTEEAGEAAGAWIGvlgqnprkgvtHTRDDVAAELADVAFTALVAIES----LGGDARAALLACAEKVRAR 100
                 6799*******99766788899999998899*********9999999997....8889999999999998888 PP

>> DUF2597  Protein of unknown function (DUF2597)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.9e-05      0.12      37     111 ..      15      86 ..       8      94 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.9e-05
     DUF2597  37 yvdGdveaegeieldaknlnllseaAksaGswrdleefDllffaktggeelkveafgcklkisdllnidakggek 111
                 ++d   ++ g+ el+ + l+l  ea ++aG+w ++    ++    ++  + +v a  + +  + l++i++ gg++
  KIR61913.1  15 WLDA-ANGAGDAELTCRILKLTEEAGEAAGAWIGVLG--QNPRKGVTHTRDDVAAELADVAFTALVAIESLGGDA 86 
                 5553.4678***********************88644..444455556666677777777777788887777766 PP

>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.4e-05      0.14      27      73 ..      30      87 ..      16      97 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.4e-05
                HHHHHHHHHHHHHHHT-SC............HHHHHHHHHHHHHHHHHHHHHHCT--CH CS
      PRA-PH 27 raaligEEavElleaaseg............dlaeladelaDllYvtygllvllGidld 73
                r  ++ EEa E   a   g            ++ ++a elaD+ + +++++  lG d+ 
  KIR61913.1 30 RILKLTEEAGEAAGAWI-GvlgqnprkgvthTRDDVAAELADVAFTALVAIESLGGDAR 87
                55677888888888664.22445566667779*******************99997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 752.20
//
Query:       KIR61914.1  [L=189]
Description: dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-18   65.2   0.8    5.6e-18   64.7   0.8    1.3  1  Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain


Domain annotation for each model (and alignments):
>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.8   3.1e-22   5.6e-18       3      49 ..      46      92 ..      44      98 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 3.1e-22
                    EEEEE-SSBTT--EEEEEEETTEEEEEEE-TTSTTTTT---HHHHTC CS
  Molybdop_Fe4S4  3 vvktaCpyCgvgCglevhvkdgkivkvegdpdhpvnegrlCvKGrtl 49
                    v++++CpyC vgCg +v v dg+++++egdpd+p+++grlC+KG + 
      KIR61914.1 46 VARSVCPYCAVGCGQRVFVTDGRVTQIEGDPDSPISRGRLCPKGSAS 92
                    789*****************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1364.34
//
Query:       KIR61915.1  [L=878]
Description: formate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-21   74.8   0.0    2.9e-12   46.3   0.0    2.4  2  Molybdopterin    Molybdopterin oxidoreductase
    3.5e-08   33.5   0.0    1.2e-07   31.7   0.0    1.9  1  Molydop_binding  Molydopterin dinucleotide binding domain


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   3.2e-16   2.9e-12     124     378 ..       3     382 ..       1     386 [. 0.81
   2 !   25.9   0.0   4.9e-10   4.4e-06     387     429 ..     410     452 ..     408     455 .. 0.93

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 3.2e-16
                    HHSHHHHHHHHHHHHTTC-EEEEECSSB-HCGGGCSEEEEEHTTTHHHHHHHHHHHHHHCCCCTCHHHHHHEECHHHCCCCCCCEECCS....... CS
  Molybdopterin 124 eerpilnarirkaalkkkakvivigpryaellkfadewlaikpgtdaalalamghvilqelkvdkeflrkytygkeetdmpllvtleee....... 212
                    e +p+   +  ++a++++akv+ ++pr++ ++  ad +l+i++gtd al l++    ++ +++++  l++++y+ ++t+  + v  +         
     KIR61915.1   3 EAHPVG-FQWVMEAKRRGAKVFHVDPRFTRTSAVADTYLPIRAGTDIAL-LGGV---VRHILENE--LDFREYVLAYTNAATIVSDQFAdtedldg 91 
                    455555.67778888888************999****************.7775...89999999..999********99998887666889**** PP

                    .................................................................................HHHHHHCCHHHHHHH CS
  Molybdopterin 213 .................................................................................tgkkkevvariarel 227
                                                                                                     ++  ++++ ++  el
     KIR61915.1  92 lfsgyrpdtgsydtsswqyagheghaeitgtgkerdsaaglrheshgmpvptpaqrdetlqhprcvyqilrrhfarytpemVERVCGIPQEKFLEL 187
                    ********************************************************************************9666677777777777 PP

                    HHHHHHHTSS...EEEEECHHHHTSTTHHHHHHHHHHHHHHCTHCSSTTCEEEEESSCTTHHHCHHHHTCCTTCCCCCCCTT.............. CS
  Molybdopterin 228 arnaaktagk...smiivGaglnhrqdgdaiyravinLallvgnvgqpgGgwahlnGqlilagaaekvgalpvllsvkslke.............. 306
                    a+  a++ g+    + ++  g ++++ g + +r+ + +  l+gn+g+pgGg  +l+G  +++g   +  +l  ll+ +  +               
     KIR61915.1 188 ADAWAANSGRertGALVYSVGWTQHSVGVQYIRTGAIIQTLLGNMGRPGGGILALRGHASIQG-STDIPTLYNLLPGYLPMPhhadhetfddwvds 282
                    76666666552225777899*************************************666665.45555554444444433355556666666666 PP

                    ...............................HHHHHCCCTTTCSTSS--ECGGCHHHHHHTTSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEE CS
  Molybdopterin 307 ...............................ekikfaaeqpgnlgnfprnlfversnllkssgkkvlyllgnnpevdhadenevekalekldlvvv 371
                                                   e+ +  +  p   g +  ++ v   n++  ++++ ++llg+np v  a          +ld +vv
     KIR61915.1 283 irhpgqkgfwsnsrayaasllkaywgdaatpENDFCYDHLPRMTGDHGTYQQV--LNMID-GKIRGYFLLGQNPAVGSAHGRAQRLGMANLDWLVV 375
                    66666666666666666666666666666658888888889999998888888..79997.9**************99998888667779999999 PP

                    EESCSSH CS
  Molybdopterin 372 ldgrlts 378
                     d +l +
     KIR61915.1 376 RDLFLIE 382
                    9998844 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 4.9e-10
                    EEBE-CCGSEEEEE-TTSEEEEEEESSS-STT-BEHHHHHHHH CS
  Molybdopterin 387 LPaatwyEkedlytndegrfqhlkqavsppgeaksdwkIlkaL 429
                    LPaa+ +Eke+++t++++  q +++av+ppg+a+s+ + +  L
     KIR61915.1 410 LPAASHVEKEGTFTQTQRLLQWREKAVDPPGDARSELWFFYHL 452
                    9***********************************9988776 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.4e-11   1.2e-07       5     100 ..     699     805 ..     696     814 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.4e-11
                      EE-BTTBSTTTT.TCGCCHHHHCSSS.-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-T........TEEEEESSHCC...... CS
  Molydop_binding   5 tgrsldqlhsqt.rtrpvlrlakpep.evveinpedAaalGikdGdlVevesrrGsvevrakvtervrp........Gvvfmpfgwwe.agekg 87 
                      t+++l ++h+   ++r+v+ la+ +p ++ve++pe Aa+ G+++  + ++ s r  +e+++ vt+r+ p         ++++p++++     +g
       KIR61915.1 699 TVSRLTEHHTAGgMSRTVRPLAELQPeMFVEVSPELAAEAGLAHLGWAHLVSGRAVIEAKVLVTDRLTPlrvdgriiHQLWLPYHFGTeGLVTG 792
                      5555666666666*****************************************************9884444333345678888877777788 PP

                      S-GHCTS--SCST CS
  Molydop_binding  88 gnaNaltddatdp 100
                       +aN+l    +dp
       KIR61915.1 793 DSANDLFGITLDP 805
                      8888888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (878 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 6090.68
//
Query:       KIR61916.1  [L=309]
Description: hypothetical protein TK50_31235 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-23   81.1   7.4    5.1e-23   81.1   7.4    1.4  1  Fer4_11   4Fe-4S dicluster domain
    8.8e-20   71.0   2.1    4.1e-08   33.7   0.0    3.4  3  Fer4_7    4Fe-4S dicluster domain
    2.4e-12   46.8  17.8    2.8e-06   27.4   8.1    3.3  3  Fer4_9    4Fe-4S dicluster domain
    1.8e-11   44.0  20.1    1.6e-06   28.1   8.4    3.4  3  Fer4_10   4Fe-4S dicluster domain
      2e-09   37.0  32.2     0.0013   18.7   3.6    4.4  4  Fer4_2    4Fe-4S binding domain
      2e-09   36.9  40.5    4.9e-06   26.1   7.0    5.1  6  Fer4      4Fe-4S binding domain
    8.6e-09   35.1  35.1    6.5e-06   26.0   4.4    4.7  4  Fer4_6    4Fe-4S binding domain
    5.6e-07   30.4  22.6      0.024   15.6   3.7    4.3  4  Fer4_16   4Fe-4S double cluster binding domain
      2e-06   28.4  38.9       0.25   12.4   5.7    4.3  4  Fer4_3    4Fe-4S binding domain
    0.00025   21.5  22.4       0.79   10.3   0.3    4.3  3  Fer4_17   4Fe-4S dicluster domain
      0.001   19.4  33.1      0.017   15.6   1.4    4.5  4  Fer4_4    4Fe-4S binding domain
     0.0021   18.5  25.7      0.047   14.1   5.4    4.1  4  Fer4_8    4Fe-4S dicluster domain
     0.0089   16.1  29.5       0.29   11.3   2.3    4.3  5  Fer4_21   4Fe-4S dicluster domain
  ------ inclusion threshold ------
        6.3    7.0  19.4       0.52   10.5   2.8    3.5  3  Fer4_18   4Fe-4S dicluster domain
        6.5    7.6  19.8        6.3    7.6   0.1    4.0  3  Fer4_15   4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Fer4_11  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   7.4   4.2e-26   5.1e-23       2      98 ..     124     218 ..     123     220 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 4.2e-26
     Fer4_11   2 ewlflpeqCrhCleppCvasapseaivkdeetGaVlldektkkeevrevveacPykivrkneetgkvekCdmcldrveaGllpacvescptgalnfg 98 
                 +wl++++ C+hC++++C++++p++++++ e  G V+++e+ ++ ++  ++ acPy ++ + +  g++ kC++c+dr  aGl+pac ++cpt+ +++g
  KIR61916.1 124 RWLMMSDVCKHCTHAACLDVCPTGSLFRTE-FGTVVVQEDICN-GCGYCIPACPYGVIDQRKGDGRAWKCTLCYDRLGAGLTPACAQACPTESIQYG 218
                 69*********************9999888.9**********8.************************************************99877 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   3.5e-11   4.1e-08       2      51 ..      35     147 ..      34     148 .. 0.69
   2 !   25.3   9.8   1.4e-08   1.7e-05       2      51 ..     164     213 ..     163     214 .. 0.84
   3 !    9.6   1.5    0.0011       1.3       2      24 ..     191     222 ..     189     241 .. 0.61

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 3.5e-11
      Fer4_7   2 CigCgaCvaaC.....................................pvkaieldeeenek...............................gt.... 28 
                 CigC+aC++aC                                     p            +                               g     
  KIR61916.1  35 CIGCKACEVACkewndvpgsgldllgmsydntgaltanswrhvafveqP------------RpaapaadapgssaagpqflgmpgaqppgrgtGAqtrs 121
                 *****************************98887776555444444440............23344444445555555555555444444433113344 PP

      Fer4_7  29 .ekveidpekClgCga..CvavCPtg 51 
                   ++ + ++ C +C++  C +vCPtg
  KIR61916.1 122 dFRWLMMSDVCKHCTHaaCLDVCPTG 147
                 477899999*****9888******98 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 1.4e-08
      Fer4_7   2 CigCgaCvaaCpvkaieldeeenekgtekveidpekClgCg.........aCvavCPtg 51 
                 C gCg+C +aCp+++i+ ++          +++++kC+ C+         aC+++CPt+
  KIR61916.1 164 CNGCGYCIPACPYGVIDQRK---------GDGRAWKCTLCYdrlgagltpACAQACPTE 213
                 *****************966.........48899*****965555555558******96 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0011
      Fer4_7   2 CigC....g.....aCvaaCpvkaieldeeen 24 
                 C+ C    g     aC++aCp++ i++ + ++
  KIR61916.1 191 CTLCydrlGagltpACAQACPTESIQYGPLDE 222
                 66664433033444899999999888876543 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.2   2.3e-05     0.028       2      19 ..      35      52 ..      34      74 .. 0.88
   2 !   10.4   0.1   0.00049      0.58      33      49 ..     125     147 ..      81     149 .. 0.80
   3 !   27.4   8.1   2.4e-09   2.8e-06       2      49 ..     164     213 ..     163     215 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.3e-05
      Fer4_9  2 CtgCgaCveaCpagvvve 19
                C+gC+aC+ aC+ +  v+
  KIR61916.1 35 CIGCKACEVACKEWNDVP 52
                ***********9887655 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00049
      Fer4_9  33 e....eaCigCga..CveaCpkg 49 
                 +    + C +C    C+++Cp+g
  KIR61916.1 125 WlmmsDVCKHCTHaaCLDVCPTG 147
                 155555799999888******97 PP

  == domain 3  score: 27.4 bits;  conditional E-value: 2.4e-09
      Fer4_9   2 CtgCgaCveaCpagvvvedaaerkarlraaseeaCigCga.........CveaCpkg 49 
                 C+gCg+C++aCp+gv+ ++++ + a        +C+ C +         C++aCp++
  KIR61916.1 164 CNGCGYCIPACPYGVIDQRKGDGRAW-------KCTLCYDrlgagltpaCAQACPTE 213
                 ****************9888887754.......7*********************97 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   0.00013      0.15       5      19 ..      31      45 ..      28      77 .. 0.79
   2 !   10.8   0.6   0.00034       0.4       5      21 ..     128     146 ..     124     153 .. 0.84
   3 !   28.1   8.4   1.3e-09   1.6e-06       2      56 .]     157     211 ..     156     211 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
     Fer4_10  5 dddtCirCgkCvkaC 19
                d++ Ci+C++C  aC
  KIR61916.1 31 DTSVCIGCKACEVAC 45
                7889*********99 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00034
     Fer4_10   5 dddtCirCg..kCvkaCPa 21 
                  +d C +C+  +C ++CP+
  KIR61916.1 128 MSDVCKHCThaACLDVCPT 146
                 6789****9999*****98 PP

  == domain 3  score: 28.1 bits;  conditional E-value: 1.3e-09
     Fer4_10   2 vvidddtCirCgkCvkaCPadltsvgakgeaseeeavrkkvekCtgc......g...aCveaCP 56 
                 vv+++d C +Cg C  aCP+            ++ + ++  +kCt c      g   aC++aCP
  KIR61916.1 157 VVVQEDICNGCGYCIPACPY---------GVIDQRKGDGRAWKCTLCydrlgaGltpACAQACP 211
                 78999***************.........444555667789******7666552678******9 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.8   6.4e-06    0.0076       4      21 ..      29      46 ..      26      47 .. 0.89
   2 !   12.2   2.3   0.00013      0.15       7      22 .]     129     146 ..     126     146 .. 0.89
   3 !   18.7   3.6   1.1e-06    0.0013       4      22 .]     158     176 ..     156     176 .. 0.88
   4 !    7.0   1.8    0.0059       7.1       9      22 .]     190     212 ..     185     212 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.4e-06
      Fer4_2  4 vvdtdrCigCgaCvsaCP 21
                + dt  CigC+aC  aC 
  KIR61916.1 29 FTDTSVCIGCKACEVACK 46
                6799*************5 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00013
      Fer4_2   7 tdrCigCg..aCvsaCPa 22 
                 +d C +C   aC+++CP+
  KIR61916.1 129 SDVCKHCThaACLDVCPT 146
                 589****777*******7 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 1.1e-06
      Fer4_2   4 vvdtdrCigCgaCvsaCPa 22 
                 vv +d+C+gCg C+ aCP+
  KIR61916.1 158 VVQEDICNGCGYCIPACPY 176
                 56689*************5 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0059
      Fer4_2   9 rCigCg.........aCvsaCPa 22 
                 +C+ C          aC +aCP+
  KIR61916.1 190 KCTLCYdrlgagltpACAQACPT 212
                 799994455577999*******7 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   3.1   3.4e-06    0.0041       4      18 ..      31      45 ..      28      47 .. 0.91
   2 ?   -3.1   0.3       6.8   8.2e+03       6      11 ..     130     135 ..     129     136 .. 0.71
   3 !    7.9   0.1    0.0024       2.9      13      22 ..     139     148 ..     138     150 .. 0.87
   4 !   26.1   7.0   4.1e-09   4.9e-06       1      23 [.     157     179 ..     157     180 .. 0.93
   5 ?   -1.4   0.3         2   2.4e+03       7      11 ..     190     194 ..     190     196 .. 0.77
   6 !    9.0   0.6    0.0011       1.3      13      23 ..     205     215 ..     205     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.4e-06
                ETTTSSS-THHHHHS CS
        Fer4  4 deekCigCGaCvevC 18
                d++ CigC+aC+ +C
  KIR61916.1 31 DTSVCIGCKACEVAC 45
                899************ PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.8
                 TTSSS- CS
        Fer4   6 ekCigC 11 
                 + C +C
  KIR61916.1 130 DVCKHC 135
                 568777 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0024
                 HHHHHSTTTE CS
        Fer4  13 aCvevCPvgA 22 
                 aC +vCP+g 
  KIR61916.1 139 ACLDVCPTGS 148
                 7*******96 PP

  == domain 4  score: 26.1 bits;  conditional E-value: 4.1e-09
                 EEEETTTSSS-THHHHHSTTTEE CS
        Fer4   1 vvideekCigCGaCvevCPvgAI 23 
                 vv+ e+ C gCG+C+ +CP+g+I
  KIR61916.1 157 VVVQEDICNGCGYCIPACPYGVI 179
                 6899******************9 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 2
                 TSSS- CS
        Fer4   7 kCigC 11 
                 kC+ C
  KIR61916.1 190 KCTLC 194
                 78888 PP

  == domain 6  score: 9.0 bits;  conditional E-value: 0.0011
                 HHHHHSTTTEE CS
        Fer4  13 aCvevCPvgAI 23 
                 aC+++CP++ I
  KIR61916.1 205 ACAQACPTESI 215
                 7*******988 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   2.2   2.1e-05     0.026       5      21 ..      31      47 ..      29      51 .. 0.88
   2 !   10.4   1.8   0.00045      0.54       7      22 ..     130     147 ..     127     149 .. 0.87
   3 !   26.0   4.4   5.4e-09   6.5e-06       2      24 .]     157     179 ..     156     179 .. 0.95
   4 ?    1.0   3.7      0.44   5.2e+02       8      22 ..     190     213 ..     190     215 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-05
      Fer4_6  5 dpdkCigCgdCvrvCPe 21
                d + CigC +C+++C e
  KIR61916.1 31 DTSVCIGCKACEVACKE 47
                5677***********76 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00045
      Fer4_6   7 dkCigCgd..CvrvCPeg 22 
                 d C +C    C +vCP+g
  KIR61916.1 130 DVCKHCTHaaCLDVCPTG 147
                 66****9999******98 PP

  == domain 3  score: 26.0 bits;  conditional E-value: 5.4e-09
      Fer4_6   2 veidpdkCigCgdCvrvCPegai 24 
                 v++++d C+gCg C+ +CP+g+i
  KIR61916.1 157 VVVQEDICNGCGYCIPACPYGVI 179
                 89*******************98 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.44
      Fer4_6   8 kCigCgd.........CvrvCPeg 22 
                 kC+ C+d         C+ +CP+ 
  KIR61916.1 190 KCTLCYDrlgagltpaCAQACPTE 213
                 5777766666667777999**986 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   1.9     0.027        33       2      12 ..      35      45 ..      27      49 .. 0.82
   2 !   11.0   0.7   0.00053      0.63       2      18 ..     132     150 ..     131     162 .. 0.80
   3 !   15.6   3.7     2e-05     0.024       2      22 ..     164     183 ..     163     197 .. 0.83
   4 !    9.0   0.0    0.0022       2.7       7      27 ..     205     225 ..     203     248 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.027
     Fer4_16  2 CgtCgkCaevC 12
                C++C++C  +C
  KIR61916.1 35 CIGCKACEVAC 45
                88888888888 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00053
     Fer4_16   2 CgtCgk..CaevCPtnaik 18 
                 C+ C+   C++vCPt+ + 
  KIR61916.1 132 CKHCTHaaCLDVCPTGSLF 150
                 99999777*******9875 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 2e-05
     Fer4_16   2 CgtCgkCaevCPtnaikekke 22 
                 C +Cg C+ +CP ++i+++ +
  KIR61916.1 164 CNGCGYCIPACPYGVIDQR-K 183
                 ****************998.3 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.0022
     Fer4_16   7 kCaevCPtnaikekkekeiea 27 
                 +Ca++CPt+ i+     e++ 
  KIR61916.1 205 ACAQACPTESIQYGPLDELRE 225
                 6**********9874444444 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   3.2    0.0014       1.7       1      11 [.      35      45 ..      35      49 .. 0.93
   2 !   12.3   4.8   0.00022      0.26       1      14 [.     132     147 ..     132     148 .. 0.88
   3 !   12.4   5.7   0.00021      0.25       1      14 [.     164     177 ..     164     178 .. 0.96
   4 !   12.1   1.8   0.00025       0.3       1      13 [.     191     212 ..     191     214 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0014
      Fer4_3  1 CtgCgaCvevC 11
                C+gC aC+++C
  KIR61916.1 35 CIGCKACEVAC 45
                *********** PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00022
      Fer4_3   1 CtgCg..aCvevCPvg 14 
                 C +C   aC++vCP+g
  KIR61916.1 132 CKHCThaACLDVCPTG 147
                 99**6669******98 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00021
      Fer4_3   1 CtgCgaCvevCPvg 14 
                 C+gCg C  +CP+g
  KIR61916.1 164 CNGCGYCIPACPYG 177
                 ************98 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 0.00025
      Fer4_3   1 CtgCg.........aCvevCPv 13 
                 Ct C+         aC ++CP+
  KIR61916.1 191 CTLCYdrlgagltpACAQACPT 212
                 ****99999999999******7 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.3   0.00066      0.79      43      57 ..      32      46 ..      12      50 .. 0.80
   2 !    6.9   0.5    0.0078       9.3       2      19 ..     132     151 ..     131     160 .. 0.80
   3 !    9.3   9.7    0.0014       1.6       2      20 ..     164     182 ..     163     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00066
     Fer4_17 43 aslCieCgeCerkCP 57
                 s Ci+C+ Ce +C 
  KIR61916.1 32 TSVCIGCKACEVACK 46
                577999999999996 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0078
     Fer4_17   2 CiqCgy..ClpeCpsyeayd 19 
                 C +C +  Cl++Cp++   +
  KIR61916.1 132 CKHCTHaaCLDVCPTGSLFR 151
                 99**9667******987655 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0014
     Fer4_17   2 CiqCgyClpeCpsyeaydn 20 
                 C++CgyC+p+Cp++ + + 
  KIR61916.1 164 CNGCGYCIPACPYGVIDQR 182
                 ************9887554 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.4   1.4e-05     0.017       3      15 ..      34      46 ..      32      57 .. 0.91
   2 ?    6.5   2.5     0.012        14       2      17 .]     130     147 ..     129     147 .. 0.88
   3 !   13.3   3.6   7.8e-05     0.093       3      17 .]     163     177 ..     161     177 .. 0.90
   4 ?    0.6   3.0      0.91   1.1e+03       8      16 ..     204     212 ..     190     217 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-05
      Fer4_4  3 rCigCgsCvaaCP 15
                 CigC++C+ aC+
  KIR61916.1 34 VCIGCKACEVACK 46
                5***********7 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.012
      Fer4_4   2 erCigCg..sCvaaCPqg 17 
                 + C +C   +C ++CP+g
  KIR61916.1 130 DVCKHCThaACLDVCPTG 147
                 78****9989******86 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 7.8e-05
      Fer4_4   3 rCigCgsCvaaCPqg 17 
                  C+gCg C+ aCP+g
  KIR61916.1 163 ICNGCGYCIPACPYG 177
                 5************86 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.91
      Fer4_4   8 gsCvaaCPq 16 
                 ++C  aCP+
  KIR61916.1 204 PACAQACPT 212
                 37******7 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   5.4   3.9e-05     0.047       3      64 ..      33     147 ..      31     148 .. 0.59
   2 ?    2.9   2.6      0.13   1.5e+02       5      19 ..     132     148 ..     128     155 .. 0.64
   3 !    9.6   3.3     0.001       1.2       5      17 ..     164     176 ..     161     188 .. 0.81
   4 ?    5.4   1.3     0.021        25      46      63 ..     186     212 ..     177     215 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.9e-05
      Fer4_8   3 ekCieCgaCqsaCpvlrr....................................................tkkhlldargeaaedvqeeqvleeeealw 49 
                 + Ci+C aC+ aC  +++                                                     ++   +++g+ ++ +q++       + +
  KIR61916.1  33 SVCIGCKACEVACKEWNDvpgsgldllgmsydntgaltanswrhvafveqprpaapaadapgssaagpqfLGMPGAQPPGRGTG-AQTRSDFRWLMMSD 130
                 67***********75555555555555555555555555555556666666666666666666666666444555555555555.44444444444555 PP

      Fer4_8  50 sCttcga..CtevCpvg 64 
                  C +c +  C +vCp+g
  KIR61916.1 131 VCKHCTHaaCLDVCPTG 147
                 566555444******86 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.13
      Fer4_8   5 CieCg..aCqsaCpvlr 19 
                 C +C   aC + Cp+ +
  KIR61916.1 132 CKHCThaACLDVCPTGS 148
                 66664447777777655 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.001
      Fer4_8   5 CieCgaCqsaCpv 17 
                 C++Cg+C  aCp 
  KIR61916.1 164 CNGCGYCIPACPY 176
                 ***********94 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.021
      Fer4_8  46 ealwsCttcga.........CtevCpv 63 
                   +w+Ct c           C+++Cp+
  KIR61916.1 186 GRAWKCTLCYDrlgagltpaCAQACPT 212
                 468******99999999999******7 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   2.3   0.00025      0.29       4      20 ..      31      47 ..      29      51 .. 0.88
   2 ?    5.1   2.3     0.021        25      36      53 ..     127     146 ..     117     152 .. 0.77
   3 !    8.8  13.8    0.0014       1.7       6      57 ..     130     179 ..     127     181 .. 0.71
   4 ?   -2.3   0.1       4.3   5.1e+03      11      15 ..     191     195 ..     187     197 .. 0.64
   5 ?    2.3   0.0      0.16   1.9e+02      14      24 ..     206     216 ..     203     232 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00025
     Fer4_21  4 dedkCigCgkCliaCed 20
                d + CigC+ C +aC++
  KIR61916.1 31 DTSVCIGCKACEVACKE 47
                6789***********96 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.021
     Fer4_21  36 vvedeCvGCn..lCssvCPv 53 
                 +++d C  C+   C++vCP+
  KIR61916.1 127 MMSDVCKHCThaACLDVCPT 146
                 6789999996336******6 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0014
     Fer4_21   6 dkCigCgk..CliaCedtshqaieidaktvlkvvedeCvGCnlCssvCPvedci 57 
                 d C +C++  Cl +C+++s    e     ++ v+ed C GC  C+  CP  ++i
  KIR61916.1 130 DVCKHCTHaaCLDVCPTGSLFRTE---FGTVVVQEDICNGCGYCIPACPY-GVI 179
                 678888743388888865543333...34567889**************5.666 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 4.3
     Fer4_21  11 CgkCl 15 
                 C++C+
  KIR61916.1 191 CTLCY 195
                 55554 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.16
     Fer4_21  14 CliaCedtshq 24 
                 C++aC+++s+q
  KIR61916.1 206 CAQACPTESIQ 216
                 66666655554 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.2      0.09   1.1e+02      85      97 ..      35      47 ..      25      61 .. 0.72
   2 ?    3.7   1.3     0.057        68      61      78 ..     132     151 ..     117     160 .. 0.74
   3 ?   10.5   2.8   0.00044      0.52      60      93 ..     163     196 ..     155     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.09
     Fer4_18 85 ciscllcidacdk 97
                ci c  c  ac++
  KIR61916.1 35 CIGCKACEVACKE 47
                6666666666654 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.057
     Fer4_18  61 cidce..scvkvcPtgidir 78 
                 c +c   +c++vcPtg   r
  KIR61916.1 132 CKHCThaACLDVCPTGSLFR 151
                 66664227*******96555 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00044
     Fer4_18  60 dcidcescvkvcPtg.idirkGlqleciscllcid 93 
                  c  c++c+  cP g id rkG      +c+lc d
  KIR61916.1 163 ICNGCGYCIPACPYGvIDQRKGDG-RAWKCTLCYD 196
                 5999*********9857***9954.5567777776 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0053       6.3       4      21 ..      31      48 ..      28      79 .. 0.81
   2 ?   -1.8   1.1       4.7   5.6e+03      11      20 ..     137     146 ..     130     150 .. 0.76
   3 ?    6.8   7.1    0.0096        11       1      28 [.     157     186 ..     157     241 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0053
     Fer4_15  4 DrdaCigcglCvaeapev 21
                D + Cigc +C  +++e 
  KIR61916.1 31 DTSVCIGCKACEVACKEW 48
                8889*********99985 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.7
     Fer4_15  11 cglCvaeape 20 
                 +++C++++p+
  KIR61916.1 137 HAACLDVCPT 146
                 6788888875 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0096
     Fer4_15   1 VvvDrdaCigcglCvaeap.evfelde.dg 28 
                 Vvv +d C gcg C+ ++p  v+ + + dg
  KIR61916.1 157 VVVQEDICNGCGYCIPACPyGVIDQRKgDG 186
                 8999**************823444443344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2059.59
//
Query:       KIR61917.1  [L=337]
Description: hypothetical protein TK50_31240 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-19   71.4   2.6      1e-19   71.4   2.6    1.5  2  NrfD      Polysulphide reductase, NrfD


Domain annotation for each model (and alignments):
>> NrfD  Polysulphide reductase, NrfD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   2.6   5.6e-24     1e-19      10     195 ..      45     220 ..      40     252 .. 0.83
   2 ?   -2.8   0.2      0.21   3.8e+03      21      38 ..     289     306 ..     269     314 .. 0.66

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 5.6e-24
        NrfD  10 vWglliavylFligisAgalilaillklfkkkegkslkliirtgallaalavlagllilvldlgrperflklllyynfsSimswgvlllslyivvlvly 108
                 vW + ia ylF +g++Ag+++la+  +l  + +        r g +++++av+a   +lv dlgrp rf ++l+  +++S+ms+g  +l+++ + + + 
  KIR61917.1  45 VWKWDIAAYLFTGGLAAGSSLLAAGGQLTGRPAL------RRAGRVTSLAAVTASAYFLVNDLGRPARFHHMLRVAKPTSPMSVGTWILTVFGPAAGVA 137
                 9****************************99884......4566667779999999******************************9999988876655 PP

        NrfD 109 llvifekdlaakglpalgilaklislaervakilaiialilavllgsytgfllsavlsrplwnspl..lpvlFlasaiasGlavlllas 195
                  +  + + l ++g  +lg+  +l+  a r+a    ++a+ +a  l++ytg+ll+   + p w+++   lp +F  sa+asG++v lla 
  KIR61917.1 138 AVAEAAPWLPERG--VLGVGRRLLPAAGRAA---GLVAAATAPALATYTGVLLA-DTAVPSWHEAYpeLPTIFAGSALASGAGVGLLAA 220
                 4443444566666..6788888777776666...6666667************5.5599***985444****************77664 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.21
        NrfD  21 ligisAgalilaillklf 38 
                 l g+s +al+ a+++++f
  KIR61917.1 289 LSGLSGAALLAASVATRF 306
                 345555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2361.64
//
Query:       KIR61918.1  [L=432]
Description: selenocysteine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-98  329.1   0.0    3.9e-98  328.8   0.0    1.1  1  SelA            L-seryl-tRNA selenium transferase
    7.8e-06   26.0  11.4    7.8e-06   26.0  11.4    4.8  4  Se-cys_synth_N  Selenocysteine synthase N terminal


Domain annotation for each model (and alignments):
>> SelA  L-seryl-tRNA selenium transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.8   0.0  4.4e-102   3.9e-98       1     366 [.      71     413 ..      71     414 .. 0.94

  Alignments for each domain:
  == domain 1  score: 328.8 bits;  conditional E-value: 4.4e-102
                 EEEESS-SS-TTTTSS---HHHHHHHHHHHHSEBSTTEETTTTEE--ST.HHHHHHHHHHHT-SEEEEES-HHHHHHHHHHHHHBTSEEEEETTSGTEE CS
        SelA   1 vinltGvvlhtnLGrallaeeaveavleaarkysnleydleegkrgsrd.alveellkeltgaedalvvnnnaaavllvLntlaagkeviisrGeLvei 98 
                 v+n+tGvvlhtnLGra+l+ +av+av+ aa  ++ +e+dl +g+r+ r  ++++ l   + +a  + vvnn aaa +l+  +laag+e+++srGeLvei
  KIR61918.1  71 VLNATGVVLHTNLGRAPLSAAAVAAVAAAA-GHTDVELDLATGRRARRGrDALAALAAAVPDAGGVHVVNNGAAALVLAATALAAGREIVVSRGELVEI 168
                 79*******************999988766.5689************96257888889999************************************** PP

                 TTTEEHHHHHHHHTBEEEEESBSSB--HHHHHHT--TTEEEEEEE---SEEEEES-B---HHHHHHHHHHHT--EEEEEES-B-S-GGGGT-----BHH CS
        SelA  99 GGsfriPdvmkkaGvkLvevGttnkthlkDyekainentalllkvhtsnyrieGftkevelaeLvelgkekglpvleDlGsGllvdlseyglskePtvq 197
                 G  fr+Pd+++ +G++L+evGttn+t l Dy +a++++t+++lkvh sn+ ++Gft++v  + L++lg    +pv+ D+GsGll    +  l+ eP   
  KIR61918.1 169 GDGFRLPDLLASTGARLREVGTTNRTSLADYADAVGPDTGFVLKVHPSNFVVTGFTSAVGVDRLATLG----VPVVADIGSGLLA--PDPLLPAEPDAA 261
                 ****************************************************************9985....9**********97..4789******** PP

                 HHHHTT-SEEEEETTSTT-SSS-EEEEE-HHHHHHHHHSTHHHHTB--HHHHHHHHHHHHHHH..TT-GGGSHHHHHHH--HHHHHHHHHHHHHHHTTS CS
        SelA 198 ealaeGvdlvsfsGDkllGgpqaGiivGkkelieklkknplkraLrvDkltlaaleatlrlyldpeklaeklptlrlltqkleelrakaerlqkelkea 296
                  +l++G+ lv+ sGDkllGgpqaG+++G  +l+++l+++pl+raLrvDkltlaal+atl+          + pt + l ++ ++lr++ e+l+++l++ 
  KIR61918.1 262 STLRAGAHLVTASGDKLLGGPQAGLLLGDADLVDRLRRHPLARALRVDKLTLAALAATLHGP--------DTPTRAALHADPAALRRRTEHLRDRLAAD 352
                 **********************************************************9753........3688899****************999876 PP

                 TT..EEEEEEEEEE-TCSSS-SS--EEEEEEEEEESSS-HHHHHHHHHTSSS-EEEEEETTEEEEEGGGS CS
        SelA 297 lgselevkvvkslsqvGsGslPveelpsaaltiaeekakleaLeerlraleepiigrleddklvlDlrtl 366
                     ++ +vv + + vG+G  P  el+s+al++ e      + +  lr  + p++gr+  ++l+lDlr++
  KIR61918.1 353 G---CKAEVVPTAAVVGGGGAPGVELDSWALALPE------RYAGLLRVGDPPVLGRVARGRLLLDLRCV 413
                 4...588999999********************98......667789*********************97 PP

>> Se-cys_synth_N  Selenocysteine synthase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0  11.4   8.7e-10   7.8e-06       1      40 []       7      46 ..       7      46 .. 0.98
   2 ?   -1.8   1.7      0.41   3.7e+03      11      21 ..      88      98 ..      55     105 .. 0.57
   3 ?   -1.8   0.3      0.42   3.8e+03      15      23 ..     121     129 ..     107     135 .. 0.62
   4 ?   -5.3   5.1         2   1.8e+04       7       7 ..     308     308 ..     276     349 .. 0.58

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 8.7e-10
  Se-cys_synth_N  1 fRsLPsVDaLLtalearallaalpRalvrdavrafLdrcR 40
                    +R++P++D LL++++++a++++l+R+ v++a+ a++ r+R
      KIR61918.1  7 RRRVPRTDVLLADPRLAAAADRLGRDRVKAAIVAAQARAR 46
                    6**************************************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.41
  Se-cys_synth_N 11 Ltalearalla 21
                    L a++++a +a
      KIR61918.1 88 LSAAAVAAVAA 98
                    33335555555 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.42
  Se-cys_synth_N  15 earallaal 23 
                     +++al+aa 
      KIR61918.1 121 ALAALAAAV 129
                     334444444 PP

  == domain 4  score: -5.3 bits;  conditional E-value: 2
  Se-cys_synth_N   7 V 7  
                     V
      KIR61918.1 308 V 308
                     1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3135.54
//
Query:       KIR61919.1  [L=587]
Description: translation elongation factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.3e-22   77.5   0.0      4e-21   75.5   0.0    1.9  1  GTP_EFTU     Elongation factor Tu GTP binding domain
      1e-13   50.7   0.1    2.3e-13   49.5   0.1    1.6  1  SelB-wing_3  Elongation factor SelB, winged helix
    1.6e-05   25.0   0.0    2.8e-05   24.2   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0044   17.4   1.2      0.013   15.9   1.2    1.9  1  GTP_EFTU_D2  Elongation factor Tu domain 2
     0.0066   16.6   3.5      0.014   15.6   0.2    3.2  3  SelB-wing_2  Elongation factor SelB, winged helix
  ------ inclusion threshold ------
       0.21   11.9   0.0       0.48   10.7   0.0    1.5  1  eIF2_C       Initiation factor eIF2 gamma, C terminal


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.0   1.3e-24     4e-21       4     190 ..       2     161 ..       1     165 [. 0.85

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 1.3e-24
                 EEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEE CS
    GTP_EFTU   4 rnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvd 102
                 r ++++ghvDhGK+TL+ +L+   g+ +            D+ +eEr+rg+Ti+   + +    +  +++++D PGH+ F+ ++ +g+  +  a++vv+
  KIR61919.1   2 RVVATAGHVDHGKSTLVRALT---GM-E-----------PDRWAEERRRGMTIDLGFAWTT-LPSGGTVAFVDVPGHERFVPNMLAGVGPAPAALFVVA 84 
                 7899****************9...33.2...........48899***********988887.799********************************** PP

                 TTTBSTHHHHHHHHHHHHTTTE.EEEEEESCGST..HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU 103 aveGvepqteevlrlalkegvp.iivfiNKmDrl..kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealve 190
                 a+eG +pq+ e+l  + ++gv    ++++ +D +  +  l +   e+  +       l      g   v+ v +Sa++g g+ +l  al++
  KIR61919.1  85 ADEGWMPQSAEHLAALHALGVAyGLLVVTRADLAdpGPALARARAEIAATS------L------G--HVEAVAVSAVTGVGLPDLRAALDR 161
                 **********************99**********55555555555555433......2......2..467888888888888888877776 PP

>> SelB-wing_3  Elongation factor SelB, winged helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.1   7.8e-17   2.3e-13       3      44 ..     536     578 ..     534     580 .. 0.91

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 7.8e-17
                  HHTT.S-BBHHHHHHHHT--HHHHHHHHHHHHHCTSEEEETTE CS
  SelB-wing_3   3 lkee.geitaaefRdllgtSRKyaiplLEyfDrigvTrRvgDk 44 
                  l+   +++t++++R++l+t+R++a+plLE +Dr+gvTrR  D+
   KIR61919.1 536 LAGLpQPFTLSAARQALDTTRRVAVPLLELLDRRGVTRRLPDD 578
                  5666699********************************9987 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   9.4e-09   2.8e-05       2      97 ..       4      96 ..       3     117 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 9.4e-09
                EEEEESTTSSHHHHHHHHHTS...TEEESSSTTSSSSEEEEEEE.ETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHH CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge...kaivsdkpgtTrdinegrvk.lkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeel 97
                va +G+   GKStL++altg    +   +++ g T+d  ++  +  +g  + +vD+pG  e     + + + ++ +  a ++l+vv a  e++ p+  e 
  KIR61919.1  4 VATAGHVDHGKSTLVRALTGMepdRWAEERRRGMTIDLGFAWTTlPSGGTVAFVDVPG-HE-----RFVPNMLAGVGPAPAALFVVAAD-EGWMPQSAEH 96
                7889****************655477889999******777544556689********.33.....33444444455577777777655.5566655444 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.2   4.4e-06     0.013       1      71 [.     189     253 ..     189     256 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.4e-06
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTC CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGd 71 
                  Gtv++g++  G l +Gd +++   +t+++   +r+++l++     d + a a++ v+++ ++ +  + +G+
   KIR61919.1 189 GTVVTGTLGGGRLAVGDHLEL--AGTGEQ---VRVRGLHRLGVARDRVDAVARVAVNLRNVPRDR-LGRGE 253
                  9********************..99*888...*********999999999999999999998888.77776 PP

>> SelB-wing_2  Elongation factor SelB, winged helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.5   4.6e+03      36      45 ..     156     165 ..     145     181 .. 0.60
   2 ?   -0.2   0.1      0.39   1.2e+03      20      29 ..     368     385 ..     366     416 .. 0.52
   3 !   15.6   0.2   4.7e-06     0.014       5      38 ..     416     448 ..     409     451 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.5
                  HHHHHHHHHT CS
  SelB-wing_2  36 qallealvar 45 
                   a l++l+ar
   KIR61919.1 156 RAALDRLAAR 165
                  4444444443 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.39
                  HHHHHHCSS........S CS
  SelB-wing_2  20 eeLrsrlap........r 29 
                  +eLr+r++         +
   KIR61919.1 368 GELRRRALArvgeltrmG 385
                  699999654145555441 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 4.7e-06
                  HHHHHH-TTS--EEHHHHHHHCSSSS-HCC.HHHH CS
  SelB-wing_2   5 aeYHrenPlrpGmskeeLrsrlaprlpakl.fqal 38 
                  ++Y + +Pl+ G++ + Lr+rl  +lp+++ ++al
   KIR61919.1 416 TRYAAAHPLEAGVPVDVLRHRL--GLPDRVlVEAL 448
                  6899******************..89988734444 PP

>> eIF2_C  Initiation factor eIF2 gamma, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00016      0.48      30      69 ..     282     321 ..     277     326 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
                 EEEEEETTEEEEEEEEEEESSEEEEEEEEEEE-STTEEEE CS
      eIF2_C  30 vLmlniGsastggvvtsvkkdeakvkLkkPvcaekgekia 69 
                 +L l++Gsa++ ++v  +  d+++++L++P+   +g++  
  KIR61919.1 282 TLTLHVGSAAVAARVRPLGVDTVRLRLARPLPLLVGDRAL 321
                 699****************************999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4459.94
//
Query:       KIR61920.1  [L=223]
Description: hypothetical protein TK50_31255 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0092   15.1   4.3     0.0092   15.1   4.3    1.5  2  Acyl_transf_3  Acyltransferase family


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1     0.075   1.3e+03     100     114 ..       7      21 ..       1      59 [. 0.58
   2 !   15.1   4.3   5.1e-07    0.0092     167     243 ..     125     215 ..     117     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.075
                    xxxxxxxxxxxxxxx RF
  Acyl_transf_3 100 vaghiqanasanvtl 114
                    v g++ + + a+++ 
     KIR61920.1   7 VLGWSAWAVLAWWAA 21 
                    333333333333333 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 5.1e-07
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 167 illlllslvfirhelfgpatsvgllplpsvlallfflfGalladaddrdrnlsr..............glkislllsllllalillalfgq 243
                    +l+++++l+++    +gp ++vg   ++ +l+ l+f++G+l+  +++r+r+++r              + + + ll+ ++l+l+++al+g 
     KIR61920.1 125 VLAAAVALGWLAMLVVGPDPVVGTRWFWFWLGSLPFGLGVLAWLHRERWRPSRRqgstppaaarrsgwAGLGWSLLATVGLSLAVVALRGL 215
                    67888999999999999*************************************9999999998888877777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 1435.61
//
Query:       KIR61921.1  [L=65]
Description: hypothetical protein TK50_31260 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 455.72
//
Query:       KIR61922.1  [L=61]
Description: hypothetical protein TK50_31265 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.41   10.6   4.0        0.7    9.9   0.8    2.1  2  IPTL-CTERM  IPTL-CTERM motif


Domain annotation for each model (and alignments):
>> IPTL-CTERM  IPTL-CTERM motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.011     2e+02      16      24 ..      11      19 ..       5      25 .. 0.79
   2 ?    9.9   0.8   3.9e-05       0.7      10      23 ..      37      50 ..      37      54 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.011
  IPTL-CTERM 16 lLlaalglr 24
                + la+l+++
  KIR61922.1 11 AVLAGLAVI 19
                677888875 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 3.9e-05
  IPTL-CTERM 10 GLiLLslLlaalgl 23
                G+ +L++L+aal++
  KIR61922.1 37 GVVILAVLAAALAW 50
                8899*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 473.57
//
Query:       KIR61923.1  [L=216]
Description: hypothetical protein TK50_31270 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1536.12
//
Query:       KIR61924.1  [L=66]
Description: hypothetical protein TK50_31275 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       137  (0.00764125); expected 358.6 (0.02)
Passed bias filter:                       86  (0.0047967); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.28s 00:00:00.66 Elapsed: 00:00:00.44
# Mc/sec: 454.46
//
Query:       KIR61925.1  [L=159]
Description: hypothetical protein TK50_31280 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
          3    7.9   6.7       0.24   11.4   1.3    2.0  3  DUF543    Domain of unknown function (DUF543)


Domain annotation for each model (and alignments):
>> DUF543  Domain of unknown function (DUF543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.5      0.94   1.7e+04      35      44 ..       9      18 ..       9      20 .. 0.71
   2 ?   11.4   1.3   1.3e-05      0.24      32      54 ..      73      95 ..      68     109 .. 0.79
   3 ?   -2.8   0.0      0.37   6.7e+03      25      39 ..     131     145 ..     129     147 .. 0.78

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 0.94
      DUF543 35 gllvGvvasv 44
                g+++G+v sv
  KIR61925.1  9 GAVAGAVGSV 18
                6778888887 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 1.3e-05
      DUF543 32 vglgllvGvvasvllfrrRaapv 54
                 glg+++G++++vl++rrR+ p 
  KIR61925.1 73 YGLGIAAGAAFAVLVARRRTPPL 95
                699***************98664 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.37
      DUF543  25 lsnllvkvglgllvG 39 
                 ls+++ + ++g++++
  KIR61925.1 131 LSDVVPHLAYGMAAA 145
                 678888899998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1149.82
//
Query:       KIR61926.1  [L=69]
Description: phosphatidylethanolamine-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 542.61
//
Query:       KIR61927.1  [L=293]
Description: universal stress protein UspA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-46  158.8  16.0    1.2e-25   90.7   3.4    2.0  2  Usp        Universal stress protein family
  ------ inclusion threshold ------
      0.096   12.8   0.2       0.17   12.0   0.2    1.3  1  DehI       Halocarboxylic acid dehydrogenase DehI
       0.17   11.6   1.8       0.66    9.7   0.2    2.4  3  PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   4.7   2.5e-24   1.5e-20       5     141 .]       9     145 ..       7     145 .. 0.84
   2 !   90.7   3.4     2e-29   1.2e-25       5     141 .]     154     290 ..     152     290 .. 0.92

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 2.5e-24
                 EEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEE..EEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHH CS
         Usp   5 IlVavDgseeskkAlewAlelakargaelillh..vidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaee 101
                 ++V+vDgs++s +A+  A+++a++r+ +l+++h  +++  + +  ++a  + +    +++e+    + a a+ae++ ++v+v+ e  d+  + ++v e+
  KIR61927.1   9 VVVGVDGSPSSLRAVGLAAAEAARRDRPLRVVHgfIWPLLRVPLGPAAGAPPGAGLRQQAEQ--LVADAVAEAEKAAPDVRVTGEIIDGEAAAVLVGES 105
                 89*******************************54455555555555544444444444444..334458999************************** PP

                 TTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp 102 edadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                   a l+VvG rg++g++ l+lGSv+ +v++ a+cpVlv r
  KIR61927.1 106 PTAALVVVGDRGLGGFATLVLGSVAVQVAAYADCPVLVAR 145
                 **************************************76 PP

  == domain 2  score: 90.7 bits;  conditional E-value: 2e-29
                 EEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHHTT CS
         Usp   5 IlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaeeed 103
                 + V+vDgs  s++A+e+A+e a+arg +l+++h+  ++as+  +d+ + +++e     e++++++   a + ++ ++v v+  +   +++ +++  ++d
  KIR61927.1 154 VAVGVDGSALSRAAVEFAAEAAAARGVALRAVHAYRHPASAGPGDMQPLVYDEDRLRGEEQRVLADSLAGLGERWPQVPVEAQVVRRRPVAALTDASRD 252
                 67*************************************************************999777777777777777777777777788888999 PP

                 SSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp 104 adliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                 a+l+VvG rg++ + +lllGSvs++vl++a+cpV vVr
  KIR61927.1 253 AQLLVVGGRGHGEFTGLLLGSVSHAVLHRADCPVAVVR 290
                 *************************************8 PP

>> DehI  Halocarboxylic acid dehydrogenase DehI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   2.9e-05      0.17      31      95 ..     168     240 ..     162     251 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.9e-05
        DehI  31 keFeaaAaalreevlsdveeerkvasia........lreqevspaevaeleaelstFdesaPrLallaqaler 95 
                  eF a Aaa r  +l++v+++r++as           +e  +  +e+++l+  l+++ e  P+  + aq++ r
  KIR61927.1 168 VEFAAEAAAARGVALRAVHAYRHPASAGpgdmqplvYDEDRLRGEEQRVLADSLAGLGERWPQVPVEAQVVRR 240
                 58********************************999*****************************9999876 PP

>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.087   5.2e+02      39      65 ..       5      31 ..       1      46 [. 0.78
   2 ?   -2.7   0.0      0.74   4.4e+03      48      65 ..      85     102 ..      64     109 .. 0.77
   3 ?    9.7   0.2   0.00011      0.66      37      75 ..     148     186 ..     127     194 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.087
                TS-EEEEEE-S-TTHHHHHHHHHHHHH CS
   PGM_PMM_I 39 kkkkvvvGrDtRvssrelaealaagla 65
                +++ vvvG D+  ss  +   +aa +a
  KIR61927.1  5 NGAAVVVGVDGSPSSLRAVGLAAAEAA 31
                57889*****99999887777666555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.74
                 -S-TTHHHHHHHHHHHHH CS
   PGM_PMM_I  48 DtRvssrelaealaagla 65 
                 D Rv+++ +  ++aa+l+
  KIR61927.1  85 DVRVTGEIIDGEAAAVLV 102
                 778888877777777775 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00011
                 CSTS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEE CS
   PGM_PMM_I  37 eakkkkvvvGrDtRvssrelaealaaglaanGvevillg 75 
                 ++ +++v+vG D+ + sr + e +a+ +aa Gv    ++
  KIR61927.1 148 TRPGGPVAVGVDGSALSRAAVEFAAEAAAARGVALRAVH 186
                 37899***************************9866665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2262.77
//
Query:       KIR61928.1  [L=248]
Description: hypothetical protein TK50_31295 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-34  118.8   0.0    3.8e-34  118.4   0.0    1.1  1  Methyltransf_19  S-adenosyl methyltransferase
  ------ inclusion threshold ------
      0.091   12.5   0.1       0.19   11.5   0.1    1.4  1  PsbH             Photosystem II 10 kDa phosphoprotein


Domain annotation for each model (and alignments):
>> Methyltransf_19  S-adenosyl methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.0   4.3e-38   3.8e-34       9     264 ..       3     242 ..       2     246 .. 0.87

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 4.3e-38
  Methyltransf_19   9 dtsrphsaRvydylLGGkdnypvDreaaeallkalpelvkvaranRaflrRavrvlaeeaGirqflDiGtGlPtednvHqvaqrvaPesRvvYv 102
                      d+ +p++aR+ d++LGG ++ pvD +aa+a++ a+  ++   r  Rafl Ravr++ +  G++ fl  G+G+Pt  nvH+     aPe+ v Y 
       KIR61928.1   3 DAAQPSTARMIDFWLGGEHHLPVDVAAARAFEGAYGPCAPLFRDLRAFLGRAVRAISAA-GVDAFLVFGAGVPTRGNVHEA----APEATVLYT 91 
                      7889****************************************************999.*******************95....7******** PP

  Methyltransf_19 103 DnDPivlaharallestpeGatdyieaDlrdpeeilespearevlDl.drPvAlllvailhfveDeedaaaivrelvdalpaGsllvlshlted 195
                      D DP+ +  ++++l+++++  + y  +D  d  +i  +   r v    +rPv ++++ +  f++D    ++ ++ l +a ++Gsll++   +  
       KIR61928.1  92 DVDPVTVGIGQRILAGSDR--AGYGFGDATDLTTIDPALLHRFVPGWgSRPVGVVFLGLAAFLDD-ATLRRTLDDLYAATAPGSLLAVDFDS-- 180
                      ******************9..8888888888888877443444444448*************999.6788999************9985444.. PP

  Methyltransf_19 196 lnpeevekvekvykeaaaplrlRsrkeverffdglelvePGlvevteWrpdeeaeeeeteeeisvyagv 264
                         ee  +  ++++  + ++r+R  k +  ++        G+v+vt+Wrpd   +    +   ++++g+
       KIR61928.1 181 ---EELAAYPQALAMMGPTFRMRPPKAFGPLLGRWTPTPEGIVPVTRWRPDGPPA----DLPDAFHGGL 242
                      ...44556667889999**********************************9855....4444455555 PP

>> PsbH  Photosystem II 10 kDa phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   2.1e-05      0.19      17      36 ..     131     150 ..     129     153 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.1e-05
        PsbH  17 kvaPGWGttpvmavfilLfl 36 
                 +++PGWG  pv  vf+ L +
  KIR61928.1 131 RFVPGWGSRPVGVVFLGLAA 150
                 78*********999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1900.80
//
Query:       KIR61929.1  [L=155]
Description: regulatory protein MarR [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-14   52.6   1.2    5.3e-14   51.9   0.1    1.9  3  MarR            MarR family
    1.7e-12   47.1   1.8    1.7e-12   47.1   1.8    2.5  2  MarR_2          MarR family
    4.7e-07   30.2   0.6    7.6e-07   29.5   0.1    1.7  2  HTH_27          Winged helix DNA-binding domain
      6e-06   26.0   2.6    6.4e-06   25.9   0.5    2.1  2  HTH_IclR        IclR helix-turn-helix domain
    7.7e-06   25.4   0.9    1.3e-05   24.6   0.1    1.8  2  HTH_24          Winged helix-turn-helix DNA-binding
     0.0068   16.6   0.0      0.011   15.9   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0091   16.0   1.4     0.0091   16.0   1.4    2.0  2  HTH_20          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.018   15.0   0.1      0.041   13.9   0.0    1.6  2  Dimerisation2   Dimerisation domain


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.8     4e+03      20      39 ..       3      22 ..       1      22 [. 0.80
   2 !   51.9   0.1   2.4e-17   5.3e-14       2      59 .]      33      90 ..      32      90 .. 0.98
   3 ?   -3.2   0.0       3.8   8.5e+03       2       9 ..     122     129 ..     117     133 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.8
                HHHHHHHHTS-HHHHHHHHH CS
        MarR 20 vseLakklgvskstvtrvld 39
                + +La ++     ++ rvld
  KIR61929.1  3 QPDLAAAIDAAAEALVRVLD 22
                56899999999999999887 PP

  == domain 2  score: 51.9 bits;  conditional E-value: 2.4e-17
                -HHHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTSE CS
        MarR  2 tltqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRskspeDrRev 59
                ++tq+++L +++ ++  +v  La+ l v +s+++r+ drLe  Gl++R  +p+DrRev
  KIR61929.1 33 SPTQLRVLSLISARPRTNVNRLAELLDVVPSSASRLCDRLEAIGLLRRVADPRDRREV 90
                89******************************************************98 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.8
                 -HHHHHHH CS
        MarR   2 tltqfviL 9  
                 ++tq+++L
  KIR61929.1 122 SRTQHELL 129
                 35555555 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   1.8   7.4e-16   1.7e-12       3      62 .]      32      89 ..      28      89 .. 0.95
   2 ?    0.7   0.5      0.22     5e+02       4      17 ..     122     135 ..      95     147 .. 0.74

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 7.4e-16
                --HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2  3 ltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                ++p+q+rvL  + +rp+   +v+ la+ l++ +s++sr+++rL+a GL++r+++p+D+R+
  KIR61929.1 32 VSPTQLRVLSLISARPR--TNVNRLAELLDVVPSSASRLCDRLEAIGLLRRVADPRDRRE 89
                46**************9..9***************************************5 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.22
                 -HHHHHHHHHHHCT CS
      MarR_2   4 tpaqarvLaaLgrr 17 
                 +++q+ +L+aL + 
  KIR61929.1 122 SRTQHELLLALLAF 135
                 46777777777665 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1   3.4e-10   7.6e-07       5      67 ..      36      97 ..      32      98 .. 0.88
   2 ?   -3.1   0.1       5.1   1.1e+04      40      45 ..     103     108 ..     100     120 .. 0.55

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 3.4e-10
      HTH_27  5 qalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdk 67
                q  vL li   r r    +l++ l+v  s++s   ++L++ GL+ r +d++drre+r+  T++
  KIR61929.1 36 QLRVLSLIS-ARPRTNVNRLAELLDVVPSSASRLCDRLEAIGLLRRVADPRDRREVRLVPTAA 97
                556777777.66777779*******************************************97 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.1
      HTH_27  40 kkLtek 45 
                 ++Lte+
  KIR61929.1 103 RELTER 108
                 344332 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.5   2.8e-09   6.4e-06       6      50 ..      37      80 ..      36      82 .. 0.96
   2 ?   -1.6   0.1       1.1   2.4e+03      31      45 ..      94     108 ..      93     109 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 2.8e-09
                HHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR  6 laiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                l++L +++++p+  ++  lA+ +++ +S+++Rl+  L+  G++++
  KIR61929.1 37 LRVLSLISARPRT-NVNRLAELLDVVPSSASRLCDRLEAIGLLRR 80
                799*********8.*****************************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
                 -HHHHHHHHHHHHHT CS
    HTH_IclR  31 pkStvhRlLqtLvel 45 
                 p +++  lL+ L+e+
  KIR61929.1  94 PTAAAEALLRELTER 108
                 667788899999886 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1     6e-09   1.3e-05       3      48 .]      34      79 ..      32      79 .. 0.96
   2 ?   -2.3   0.1       1.6   3.5e+03      21      37 ..     103     119 ..     100     120 .. 0.63

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 6e-09
      HTH_24  3 etdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                 t++++L+l+ + pr++ + LAe l++ ps  +r  +rLe  Gl++
  KIR61929.1 34 PTQLRVLSLISARPRTNVNRLAELLDVVPSSASRLCDRLEAIGLLR 79
                699***************************************9975 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
      HTH_24  21 reLAerlglSpstvnrr 37 
                 reL er +  + +v++r
  KIR61929.1 103 RELTERRHRAVRAVLER 119
                 56666666666666666 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.1e-06     0.011      25      53 ..      51      79 ..      39      83 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.1e-06
                    HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 25 tkdlaerLnvspssVsemlkkLekdGyve 53
                    + +lae L+v pss+s    +Le  G++ 
      KIR61929.1 51 VNRLAELLDVVPSSASRLCDRLEAIGLLR 79
                    789*********************99985 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.4   4.1e-06    0.0091       7      57 ..      31      81 ..      11      85 .. 0.87
   2 ?   -1.6   0.3       1.3     3e+03      29      29 ..     115     115 ..      96     147 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.1e-06
                HS-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20  7 LahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevv 57
                + +P+++r+l++++ +    ++ lae+ld+ ++++s+  + Le  gL+++v
  KIR61929.1 31 TVSPTQLRVLSLISARPRTNVNRLAELLDVVPSSASRLCDRLEAIGLLRRV 81
                789**********5555556****************************998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.3
                 H CS
      HTH_20  29 e 29 
                 +
  KIR61929.1 115 A 115
                 2 PP

>> Dimerisation2  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.2     5e+03      37      54 ..       5      22 ..       2      24 .. 0.79
   2 ?   13.9   0.0   1.8e-05     0.041      19      84 ..      35     102 ..      27     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.2
  Dimerisation2 37 evaeelgasvkGterLld 54
                   ++a++++a ++++ r ld
     KIR61929.1  5 DLAAAIDAAAEALVRVLD 22
                   578888888888888887 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.8e-05
  Dimerisation2  19 ceLgvFdlLkeeeplsaeevaeelgasvkGterLldacvaLgLLerekkee..kkalYsntelastyL 84 
                     +L+v  l+  +  ++++ +ae l++ +++ +rL+d + a+gLL+r  + +  ++     t +a++ L
     KIR61929.1  35 TQLRVLSLISARPRTNVNRLAELLDVVPSSASRLCDRLEAIGLLRRVADPRdrREVRLVPTAAAEALL 102
                    6899999999999999*****************************87443321344455566666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1156.29
//
Query:       KIR61930.1  [L=216]
Description: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-16   58.6   0.7    7.9e-16   58.6   0.7    2.3  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
  ------ inclusion threshold ------
        9.8    6.3  12.5         84    3.3  12.5    2.3  1  DUF4267          Domain of unknown function (DUF4267)


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.7   8.8e-20   7.9e-16       2      66 .]      29      93 ..      28      93 .. 0.92
   2 ?    1.0   0.7     0.083   7.5e+02      15      27 ..     153     189 ..     143     204 .. 0.61

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 8.8e-20
                     -HHHHHHHHHHHHHHHHHGGGS-H..HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf  2 lPnaiTllrlllsvlailllltyyplvlailllliasltDalDGklARrlnqvstlGkllDslaD 66
                     lPn+i+++rll + l ++lll+++  v+a+++l + ++tD++DG++ARrl+qvs+lG+llD+laD
       KIR61930.1 29 LPNLISFVRLLGVPLFLYLLLVAHADVAAVVVLALGGTTDWVDGWIARRLRQVSRLGELLDPLAD 93
                     8**********98888888877777889999999******************************9 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.083
                      HHHHHGGGS-H.......................... CS
  CDP-OH_P_transf  15 vlailllltyyp........................l 27 
                      +la++++l + +                        +
       KIR61930.1 153 LLAAFPILLLAHatsavtatvagavgwglawwglvlY 189
                      3566688777776677777666666665544444433 PP

>> DUF4267  Domain of unknown function (DUF4267)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3  12.5    0.0094        84      45      89 ..      36      80 ..      32     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0094
     DUF4267 45 vRdlalGlallvlslqgnrralgvvlllgavvglgDalivwrqgg 89
                vR l + l+l++l++++ + a+ vvl+lg++++++D++i +r ++
  KIR61930.1 36 VRLLGVPLFLYLLLVAHADVAAVVVLALGGTTDWVDGWIARRLRQ 80
                688899999******************************988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1556.07
//
Query:       KIR61931.1  [L=320]
Description: hypothetical protein TK50_31315 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-36  122.9   0.0    1.3e-35  122.5   0.0    1.2  1  DUF881    Bacterial protein of unknown function (DUF881)


Domain annotation for each model (and alignments):
>> DUF881  Bacterial protein of unknown function (DUF881)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.5   0.0     7e-40   1.3e-35       2     145 .]     135     284 ..     134     284 .. 0.93

  Alignments for each domain:
  == domain 1  score: 122.5 bits;  conditional E-value: 7e-40
      DUF881   2 leelkllaGltpveGpGvtitlddakkaeeeaeee.......vhdedLldvvneLraaGAeaIsingqRivatsaircagnailvdgrrispPyeikaI 93 
                 l++l+  +Gl +v+G Gv+++l+da+ +++ a +        v  +dL++v n+L+aaGAea++ingqR++ats+ir ag ailvd r+++ Pye++aI
  KIR61931.1 135 LRRLEAGTGLGRVRGDGVVVRLADAPPKDDGAVTGseggpprVLYTDLQKVANDLWAAGAEAVAINGQRLTATSTIRSAGAAILVDFRPVTGPYEVSAI 233
                 7899999******************999666655599************************************************************** PP

      DUF881  94 GdpekLesalniseavggllellke.glsvtvekseevtipayrgpl.elkyak 145
                 G p +L+++++ s+a+  ++el+++ gls++v++ e++t+pa  +p  +l+ya+
  KIR61931.1 234 G-PGSLRDRFDDSRAAFLMRELVNSvGLSFQVREVEDLTLPA--APEpRLRYAE 284
                 *.99********************879***************..4444889885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2431.20
//
Query:       KIR61932.1  [L=110]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-35  119.3   2.3    5.6e-35  119.3   2.3    1.6  2  DUF1290   Protein of unknown function (DUF1290)


Domain annotation for each model (and alignments):
>> DUF1290  Protein of unknown function (DUF1290)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.4      0.15   2.7e+03      11      23 ..       2      14 ..       1      18 [. 0.55
   2 !  119.3   2.3   3.1e-39   5.6e-35       1      86 []      21     108 ..      21     108 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.15
     DUF1290 11 vailaaldsvfGg 23
                +a+la l  v+ g
  KIR61932.1  2 IAVLALLAGVVLG 14
                5666666555443 PP

  == domain 2  score: 119.3 bits;  conditional E-value: 3.1e-39
     DUF1290   1 ipaayskylsvailaaldsvfGgiraslekkFdekvfisgffsnvllAalLvylGdklgv..dlylaavvvfgirifqnlaiirrlll 86 
                 +paa+++yl++a++aald+vfGg+ra+l++ Fd+k f+++f+snvl+A l+vylGd+lgv  +l++++vvv+g+rif n+a+irr+l+
  KIR61932.1  21 VPAALQPYLPIAVVAALDAVFGGVRAKLDRIFDDKQFVVSFISNVLVAGLIVYLGDQLGVggQLSTGVVVVLGVRIFGNVAAIRRHLF 108
                 799***********************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 843.91
//
Query:       KIR61933.1  [L=317]
Description: hypothetical protein TK50_31325 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-29  102.8   0.0      3e-29  101.8   0.0    1.5  2  DUF881        Bacterial protein of unknown function (DUF881)
  ------ inclusion threshold ------
      0.014   15.8   0.0       0.02   15.4   0.0    1.2  1  Med11         Mediator complex protein
       0.22   11.9   4.6       0.44   11.0   3.4    1.9  2  V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit


Domain annotation for each model (and alignments):
>> DUF881  Bacterial protein of unknown function (DUF881)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       1.9   1.1e+04      30      49 ..     116     135 ..     104     137 .. 0.52
   2 !  101.8   0.0     5e-33     3e-29       2     144 ..     174     313 ..     173     314 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.9
      DUF881  30 eeeaeeevhdedLldvvneL 49 
                 ++ ++ + ++edL+++  +L
  KIR61933.1 116 TDPTSAATRQEDLVRIFSDL 135
                 22333337788888776665 PP

  == domain 2  score: 101.8 bits;  conditional E-value: 5e-33
      DUF881   2 leelkllaGltpveGpGvtitlddakkaeeeaeeevhdedLldvvneLraaGAeaIsing.....qRivatsairc.agnailvdgrrispPyeikaIG 94 
                 ++el++laG+ p++GpG+ ++ +  +k+       +++  +ld v+eLr aGAea++i g     +Ri+a++++ + +g+ ++vdgrr+s P++i++IG
  KIR61933.1 174 ADELGILAGTLPARGPGLSVRFEAGSKP-------ISAYRVLDAVQELRGAGAEAMQISGgdgaaVRIIASTYFLDgSGGDLVVDGRRLSGPFTITVIG 265
                 6899******************666555.......*****************************************9999******************* PP

      DUF881  95 dpekLesalniseavggllellk.eglsvtvekseevtipayrgplelkya 144
                 dp+++++al+i+   gg+ ++++ +g +v ve +e  +++a+++p++l++a
  KIR61933.1 266 DPTTMATALKIP---GGVAASVAgDGGNVIVEDREVADVSALHAPVKLEHA 313
                 ************...99999998459**********************998 PP

>> Med11  Mediator complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   3.3e-06      0.02      38      93 ..     114     168 ..      84     224 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.3e-06
       Med11  38 seseeaqkeafkaatstffstLssvdvrLrrqIyaLeeagiitlessaaasagksa 93 
                  ++++++ ++ ++   ++fs L+s ++rLr+ I aLee +  +l+s +++++++ +
  KIR61933.1 114 TSTDPTSAATRQEDLVRIFSDLDSREKRLRQDIEALEESQR-QLRSGEQGRQAALQ 168
                 45666677777788889*********************444.56666555444433 PP

>> V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.4   7.4e-05      0.44       5      53 ..     130     177 ..     126     179 .. 0.92
   2 ?   -0.8   0.0      0.33     2e+03      27      55 ..     209     237 ..     205     240 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.4e-05
                   HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  V-ATPase_G_2   5 rllkeLaerEaeLdqrlEaArkeaereveaAeaeAarilreAeakakal 53 
                   r+ ++L +rE+ L q +E A +e++r++   e+  ++ l+eA  +a +l
    KIR61933.1 130 RIFSDLDSREKRLRQDIE-ALEESQRQLRSGEQGRQAALQEATRRADEL 177
                   899**************8.7899*******************9998776 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.33
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  V-ATPase_G_2  27 eaereveaAeaeAarilreAeakakalqa 55 
                   +a +e+  A aeA +i     a ++ +++
    KIR61933.1 209 DAVQELRGAGAEAMQISGGDGAAVRIIAS 237
                   57789999999999998777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 2304.92
//
Query:       KIR61934.1  [L=126]
Description: glycine cleavage system H protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-43  147.4   0.0    1.8e-43  147.3   0.0    1.0  1  GCV_H            Glycine cleavage H-protein
    1.4e-05   24.9   0.2    2.9e-05   23.8   0.1    1.6  2  Biotin_lipoyl    Biotin-requiring enzyme
     0.0044   17.7   0.2       0.74   10.5   0.0    2.1  2  HlyD_3           HlyD family secretion protein
     0.0059   16.5   0.1     0.0082   16.1   0.1    1.2  1  RnfC_N           RnfC Barrel sandwich hybrid domain
  ------ inclusion threshold ------
       0.13   12.1   0.1        4.7    7.1   0.0    2.4  2  Biotin_lipoyl_2  Biotin-lipoyl like


Domain annotation for each model (and alignments):
>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.3   0.0     5e-47   1.8e-43       1     120 [.       6     125 ..       6     126 .] 0.98

  Alignments for each domain:
  == domain 1  score: 147.3 bits;  conditional E-value: 5e-47
                 -EE-TTSEEEEEETT.EEEEEE-HHHHHHH-SEEEEE---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE-GGGTT-TTHHHH-TTTTT--EEEE CS
       GCV_H   1 lyytkehewvkveedgvatvGitdfaqeelgdvvfvelpevgtkvkkgeslaavEsvKaasevyapvsGevvevNekleeepeliNkdpyeegWliklk 99 
                 l+yt ehewv+ +++g ++vGit+faq++lgd+vfv+lpe+g++v++g+sl+ +Es K++se+yapvsG v  +Ne+l + pe+iN+dpy+ gWl+ ++
  KIR61934.1   6 LRYTAEHEWVAGDGSGAVRVGITHFAQDALGDIVFVQLPEEGAEVAAGDSLGEIESTKSVSEIYAPVSGVVAARNEALVDTPEVINSDPYGAGWLVEIT 104
                 69************************************************************************************************* PP

                 ES-GGGGGGSEEHHHHHHHHH CS
       GCV_H 100 lsnleeleeLlsaeeyekllk 120
                 + ++  ++ Ll+a +y++l++
  KIR61934.1 105 PGDPAAVDGLLTAGAYRELTE 125
                 ****************99876 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   8.1e-09   2.9e-05      22      54 ..      45      77 ..      34      81 .. 0.93
   2 ?   -2.4   0.0       1.2   4.5e+03       6      25 ..      87     107 ..      82     113 .. 0.59

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 8.1e-09
                   STTCEE-TTSEEEEEECTTEEEEEEBSSSEEEE CS
  Biotin_lipoyl 22 kvGdkVkagqvlaeveamKmemeieapkaGvvk 54
                   ++G +V+ag++l e+e+ K + ei ap++Gvv+
     KIR61934.1 45 EEGAEVAAGDSLGEIESTKSVSEIYAPVSGVVA 77
                   79*****************************97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
                    SSSEEEEEE..ECSESSSTTC CS
  Biotin_lipoyl   6 PmiGesveeg.vvevlvkvGd 25 
                    P++ +s  +g  + v + +Gd
     KIR61934.1  87 PEVINSDPYGaGWLVEITPGD 107
                    555555555555555555666 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0084        30       8      34 ..      36      63 ..      34      66 .. 0.87
   2 !   10.5   0.0   0.00021      0.74       2      45 ..      68     118 ..      67     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0084
      HlyD_3  8 Gvvvelnv.eegevvqagdelleiippd 34
                G +v++++ eeg  v+agd l ei  ++
  KIR61934.1 36 GDIVFVQLpEEGAEVAAGDSLGEIESTK 63
                678999999***************8776 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00021
      HlyD_3   2 lrApvdGvvveln...veegevvqagde.....lleiippdtllveakvpaa 45 
                 ++Apv+Gvv++ n   v   ev+++ d+     l+ei+p d ++v+  + a 
  KIR61934.1  68 IYAPVSGVVAARNealVDTPEVINS-DPygagwLVEITPGDPAAVDGLLTAG 118
                 89*******9877332588999998.55588889999999999999877665 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.3e-06    0.0082      47      88 ..      45      87 ..      39      93 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.3e-06
      RnfC_N 47 kvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiekrlvahg 88
                ++g +V  G+ ++e e+    ++++a+vsG V a +++lv ++
  KIR61934.1 45 EEGAEVAAGDSLGEIEStKSVSEIYAPVSGVVAARNEALVDTP 87
                67999*********998445679*********99887777665 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0013       4.7      19      37 ..      45      63 ..      43      68 .. 0.90
   2 ?    2.9   0.1     0.028     1e+02       2      15 ..      65      78 ..      64      80 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0013
  Biotin_lipoyl_2 19 kdGqrVkaGdvLaelDsra 37
                     ++G +V aGd L e++s++
       KIR61934.1 45 EEGAEVAAGDSLGEIESTK 63
                     59*************9986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.028
  Biotin_lipoyl_2  2 vvsIaapvsGrVaq 15
                     v +I apvsG+Va+
       KIR61934.1 65 VSEIYAPVSGVVAA 78
                     56799*******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 937.72
//
Query:       KIR61935.1  [L=150]
Description: signal peptide protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-21   74.3   0.2    9.7e-21   73.9   0.2    1.2  1  FHA           FHA domain
    4.5e-19   68.6   0.0    6.6e-19   68.0   0.0    1.2  1  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.2   1.1e-24   9.7e-21       2      69 .]      69     131 ..      68     131 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 1.1e-24
                 EEESSTTSSEETTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA   2 tiGRssdcdivlddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69 
                 t GR++d+di ldd ++Sr+Ha++++d+g  +++++D+gS nGt+vN++r++    + L++gd++++G
  KIR61935.1  69 TSGRHPDSDIFLDDVTVSRRHAEFHRDGG--TFTVRDVGSLNGTYVNRERVEA---ATLSNGDEVQIG 131
                 67***************************..*********************9...**********98 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   7.3e-23   6.6e-19       4      88 ..      53     137 ..      50     140 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 7.3e-23
                   CCCCTT-EEEETTEEEEEES-TT-SEE---TTS-TT-EEEEEETTEEEEEE-CESS--EETTEE-SECC--TTSEEEETTEEEEE CS
  Yop-YscD_cpl   4 sGpdkGaeveLeegevviGsdedcDivLsDkevsrkhlkLeveeesvrledlgsrngllvngerveelelrpgdvlelGttelal 88 
                   +Gp++Ga++ L+++  + G+++d+Di L+D +vsr+h++  ++    +++d+gs ng++vn erve ++l+ gd++++G ++ ++
    KIR61935.1  53 RGPNAGARFLLDHDVTTSGRHPDSDIFLDDVTVSRRHAEFHRDGGTFTVRDVGSLNGTYVNRERVEAATLSNGDEVQIGKFRVVF 137
                   8******************************************************************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1181.76
//
Query:       KIR61936.1  [L=252]
Description: MerR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-14   52.0   0.1    1.4e-12   47.2   0.0    2.5  2  MerR      MerR family regulatory protein
    1.8e-10   40.7   0.0    8.5e-10   38.6   0.0    2.1  3  MerR_1    MerR HTH family regulatory protein


Domain annotation for each model (and alignments):
>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   1.5e-16   1.4e-12       1      38 []      20      61 ..      20      61 .. 0.97
   2 ?    2.2   0.0     0.018   1.6e+02       5      25 ..     138     159 ..     136     163 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 1.5e-16
                EHHHH.....HHHHTTTHHHHHHHHHTTSSTSEEETTTSSEEE CS
        MerR  1 tIgev.....AeltGvsprtLRyYEreGLipppeRtegGyRlY 38
                +Igev      e+++v++++LR++E eGL+ +p+Rt++GyR Y
  KIR61936.1 20 SIGEVlgqlrVEFPDVTISKLRFLEAEGLV-EPQRTAAGYRKY 61
                7999999999********************.**********99 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.018
                 HHHHHTTTHHHHHHHHHTT.SS CS
        MerR   5 vAeltGvsprtLRyYEreG.Li 25 
                 +  ++G+  +tL  +Er G L+
  KIR61936.1 138 LVARSGIDESTLGELERLGvLV 159
                 66789************99665 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   9.5e-14   8.5e-10       1      67 [.      19      91 ..      19      93 .. 0.95
   2 ?   -1.7   0.0      0.35   3.1e+03       5      26 ..     137     158 ..     136     162 .. 0.82
   3 ?   -2.6   0.0      0.67     6e+03      10      21 ..     183     194 ..     181     196 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 9.5e-14
                EEHHHHHHHHTS.....-HHHHHHHHHHTT-S-EE-TTS-EEEEHHHHHHHHHHHHHHH.TT--GGG---XXX CS
      MerR_1  1 ysigevakilgv.....tthtlrywekegllkpkrteggrryYtdedierLklikyLlk.rGltlkgikklln 67
                +sigev  +l v     t + lr+ e egl+ p rt  g+r Y+ +d++rL+++ + +  + l+l+ i++ l+
  KIR61936.1 19 MSIGEVLGQLRVefpdvTISKLRFLEAEGLVEPQRTAAGYRKYSWDDVARLRFVLTAQRdQYLPLRVIREQLA 91
                89999999999999999**************************************99999********99776 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.35
                 HHHHHHTS-HHHHHHHHHHTT- CS
      MerR_1   5 evakilgvtthtlrywekegll 26 
                 +++ ++g+  +tl   e+ g+l
  KIR61936.1 137 DLVARSGIDESTLGELERLGVL 158
                 7889999999999988888876 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.67
                 HTS-HHHHHHHH CS
      MerR_1  10 lgvtthtlrywe 21 
                  g++++ lr ++
  KIR61936.1 183 YGLEPRHLRGYR 194
                 689999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1911.19
//
Query:       KIR61937.1  [L=155]
Description: hypothetical protein TK50_31345 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-45  152.1   0.1    6.7e-45  151.9   0.1    1.0  1  DNase-RNase  Bifunctional nuclease


Domain annotation for each model (and alignments):
>> DNase-RNase  Bifunctional nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.9   0.1   3.7e-49   6.7e-45       2     127 ..       6     129 ..       5     131 .. 0.97

  Alignments for each domain:
  == domain 1  score: 151.9 bits;  conditional E-value: 3.7e-49
                  EEEEEEETTTTEEEEEEEETTSSEEEEEE--HHHHHHHHHHHCT---SS--HHHHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEEET---EEEEE- CS
  DNase-RNase   2 vagialdassqspvvlLreeegrrvlpIwigaaeaqaialalegeeppRPlthDLlasllealgakvervvItdledgtfyAelvlrkeeeeleidaR 99 
                  v g++++ +s++p+vlLre eg+r+lpIwiga ea+aia +++g++p+RPlthDLl+++l al+a ++ v+It+l++++fyA+l + ++   +++ aR
   KIR61937.1   6 VVGVRVELPSNQPIVLLREVEGDRYLPIWIGAVEATAIAYEQQGVKPARPLTHDLLRDVLAALQAPLRAVEITELKENVFYADLLIGDDG--VRVSAR 101
                  899*******************99***************************************************************954..****** PP

                  HHHHHHHHHHHT--EEEEHHHHHHH-EE CS
  DNase-RNase 100 pSDaiaLAlrtgapIyveeevleeasie 127
                  pSD+iaLAlr+gapI ++e+vl+ea+i 
   KIR61937.1 102 PSDSIALALRVGAPIRCAEQVLSEAGIV 129
                  *************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1045.03
//
Query:       KIR61938.1  [L=194]
Description: MerR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-14   52.8   0.0    4.9e-14   52.2   0.0    1.3  1  MerR_1    MerR HTH family regulatory protein
     0.0076   16.0   0.0      0.039   13.7   0.0    2.2  2  MerR      MerR family regulatory protein


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   5.4e-18   4.9e-14       6      68 ..      38     104 ..      33     105 .. 0.88

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 5.4e-18
                 HHHHHTS-HHHHHHHHHHTT-S-EE....-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XXXX CS
      MerR_1   6 vakilgvtthtlrywekegllkpkr....teggrryYtdedierLklikyLlkrGltlkgikkllns 68 
                 ++ ++g+t+++l yw +  l++p+      +g+ r+Y+ +d+ +Lk++k+Ll++G++l++i+k++++
  KIR61938.1  38 ACHAVGITYRQLDYWARTTLVVPSVrdasGSGTSRLYSFRDLVVLKVVKRLLDAGVSLQNIRKAIEA 104
                 78899***************777777**555555*****************************9875 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   4.3e-06     0.039       5      34 ..      38      67 ..      37      68 .. 0.95
   2 ?   -2.4   0.0      0.46   4.2e+03       5      12 ..     110     117 ..     110     117 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.3e-06
                HHHHHTTTHHHHHHHHHTTSSTSEEETTTS CS
        MerR  5 vAeltGvsprtLRyYEreGLipppeRtegG 34
                +++++G++ r L y+ r  L+ p++R+++G
  KIR61938.1 38 ACHAVGITYRQLDYWARTTLVVPSVRDASG 67
                67899***********************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.46
                 HHHHHTTT CS
        MerR   5 vAeltGvs 12 
                 vA+l+G++
  KIR61938.1 110 VADLAGIT 117
                 89****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1289.77
//
Query:       KIR61939.1  [L=400]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-11   43.7   0.0    9.7e-11   42.3   0.0    1.8  2  NAD_binding_1  Oxidoreductase NAD-binding domain
    1.2e-08   35.5   0.0    2.9e-08   34.2   0.0    1.6  1  Globin         Globin
    1.4e-07   31.8   0.0    2.4e-07   31.0   0.0    1.3  1  FAD_binding_6  Oxidoreductase FAD-binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   1.6e-14   9.7e-11       1     106 [.     256     354 ..     256     356 .. 0.89
   2 ?   -3.7   0.0         3   1.8e+04       5      13 ..     361     369 ..     361     373 .. 0.79

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 1.6e-14
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvy 96 
                    ++agGtG+aP+r+v++a+ +   + ++++lv G r  edl+  + +++la +  + l++v++  ++  gw+g  g+  d  ++ l +   ee++v+
     KIR61939.1 256 LVAGGTGLAPLRAVVEALRAG--PGRPTTLVVGGRAPEDLYDDATVRKLADATGW-LRYVPT-VQTGWGWSGAVGTAGDTAVR-LGP--WEEADVL 344
                    79***************9996..889***********************999999.999999.88999998888888887744.444..79***** PP

                    EECSHHHHHH CS
  NAD_binding_1  97 vCGppgMika 106
                    vCG p+M + 
     KIR61939.1 345 VCGSPEMTRE 354
                    *******875 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3
                    GGGGHHHHH CS
  NAD_binding_1   5 GtGiaPvrs 13 
                    G+G+aP r 
     KIR61939.1 361 GSGVAPHRI 369
                    99****875 PP

>> Globin  Globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   4.9e-12   2.9e-08       1      94 [.       2      81 ..       2      86 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 4.9e-12
                HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSGGGGGGSTTTTTTT-HHHHCTSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHCS CS
      Globin  1 dkalvkaswekvkanaeelgaeilkrlFkaypdtkklFkkfgdlssaedlksspkfkahakkvlaalgeavknldndealkaalkklaarHaer 94
                d+a++++sw+++    +e  + +++ lF+ +p+++++F+                ++ +  k+laalg++v+++d++ +l+++ + l+a+H+++
  KIR61939.1  2 DVAALRQSWAQLRVAGPEAAKYFYATLFTIAPEVRSMFP-T-------------NMRYQEDKLLAALGHIVSHVDDERELAGFTRRLGADHRRF 81
                6789***********************************.4.............4899*********************************986 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   3.9e-11   2.4e-07      24      96 ..     172     241 ..     156     243 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 3.9e-11
                    TTS-----TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHH.HCS-TT-EEEEEEEE-S CS
  FAD_binding_6  24 ekqklglpvGqhvflrlkikgeaviRsYtpissenekGelellvkvypgGkmsqaL.delkigdtleikGPlGk 96 
                    ++   ++++Gq + ++++  + + +R+ +p++++  +G++e++v+ +  G++s +L ++l++gd++ +  P+G+
     KIR61939.1 172 PNYLCEYLPGQSLPVQVP--QLRLWRYLSPANAPRPDGTIEFHVRAV--GRFSTHLvRRLRVGDQVLLGSPTGT 241
                    66677899***6666666..8889*********************98..*******999*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3228.68
//
Query:       KIR61940.1  [L=940]
Description: glycine dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.3e-187  621.7   0.0   4.1e-175  582.7   0.0    2.2  2  GDC-P            Glycine cleavage system P-protein
    8.3e-06   25.0   0.2    3.8e-05   22.8   0.1    2.0  2  Aminotran_5      Aminotransferase class-V
    5.7e-05   22.5   0.8    0.00042   19.7   0.1    2.2  2  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> GDC-P  Glycine cleavage system P-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  582.7   0.0  6.9e-179  4.1e-175       2     430 .]       9     432 ..       8     432 .. 0.99
   2 !   37.2   0.0   2.6e-13   1.6e-09      47     290 ..     465     722 ..     431     729 .. 0.66

  Alignments for each domain:
  == domain 1  score: 582.7 bits;  conditional E-value: 6.9e-179
                 HH-SS-HHHHHHHHHHHT-SSHHHHHHHHS-GGGB--S---------HHHHHHHHHHHHTTB---EE--BTTB------HHHHHHTTT-HHHHS--S-S CS
       GDC-P   2 rhigpsekdqkemLetlGlkslddliekavPkeiklkkelkleapksEeellaelekiasknkvvksfiGaGyydtilPaviqrnilenpewytaYtPY 100
                 rhigp+  d+++mL+++G++s+d+l+++a+P+ i+ + +l l++p+sE+++la+l++ia +n+v+ s+iG Gy  t++Pavi rn+lenp+wytaYtPY
  KIR61940.1   9 RHIGPDGDDERRMLDVVGYDSIDELMDAAIPEVIRWHGTLDLPEPASEHDALAQLREIAGRNTVAVSMIGLGYHGTHTPAVIRRNVLENPAWYTAYTPY 107
                 9************************************************************************************************** PP

                 SGGG-HHHHHHHHHHHHHHHHHHT-SEE-S-BS-HHHHHHHHHHHHHHH-SSS--EEEEETTS-HHHHHHHHHHHGGGT-EEEEE-GGG--S-...S-E CS
       GDC-P 101 qaEisqGrLeallnfqtlvadltGldianasllDegtAaaEAvllaaraskkkakkvvvdkkvhpqtlevlktrakglgieivevdlteekvtdkekev 199
                 q+EisqGrLeallnfqt+v+dltGl +anas+lDe+tAaaEA++la rask++++ +vvd++  pqt +v+  ra++lgie+ +vdl +++      e+
  KIR61940.1 108 QPEISQGRLEALLNFQTMVTDLTGLATANASMLDEATAAAEAMTLARRASKSRSSVYVVDADALPQTVAVITSRAQPLGIEVRVVDLDADELP---GEF 203
                 **************************************************************************************8888887...6** PP

                 EEEEEEES-TTSB----HHHHHHHHHTT-EEEEEE-TTGGGTB--HHHHT-SEEEEE-TTTT---GGG----EEEEE-GGGGGG--S-EEEEEEBTTS- CS
       GDC-P 200 agvlvqypnteGriedlkelvekakkkkslvvvaadllaLtllkpPgelgaDivvGsaqrfGvPlgyGGPhagffAvkeklkRkiPGRlvGvskDaegk 298
                 +g+ +qyp+++G++ d + lve+a+   +lv+vaadllaLtll++Pge+gaDi+ G++qrfGvP+g+GGPhag++Av++ l+R++PGRlvGvs+Da+g+
  KIR61940.1 204 FGLHLQYPGASGAVRDHTPLVEAAHAAGALVTVAADLLALTLLRAPGEIGADIAAGTTQRFGVPMGFGGPHAGYLAVRAGLERMLPGRLVGVSRDAAGN 302
                 *************************************************************************************************** PP

                 EEEEEE-CCGSHHCCHHHCS-S--S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T-EE--SSBSSEEEEE--TTTHHHHHHHHHH CS
       GDC-P 299 ralrlalqtREqHirRdkAtsniCtaqaLlAnlaalyavyhGkeglkeiarrihkkteilakelkkkleeelkkkkffdtllieveekaaekvlkkaek 397
                 +a+rlalqtREqHirR++AtsniCtaq+LlA++a +yavyhG++gl++iarr+h+ ++ la++l+   +  + +  ffdt++++v  +aa +v++ a++
  KIR61940.1 303 PAYRLALQTREQHIRRERATSNICTAQVLLAVMAGMYAVYHGPDGLRAIARRTHAMAARLAAGLRA-GGVGVADVAFFDTVVATVPGRAA-QVVADAQR 399
                 ****************************************************************87.79*****************9998.99****** PP

                 TTEE-EEESTTEEEEE--TT--HHHHHHHHHHH CS
       GDC-P 398 eglnlrkvelktvgialdEtvtkedieallkvl 430
                 +g+nlr v+++ vg+++dEt+t ++++a+++++
  KIR61940.1 400 RGVNLRLVDADRVGVSCDETTTAAHLAAVWTAF 432
                 *****************************9876 PP

  == domain 2  score: 37.2 bits;  conditional E-value: 2.6e-13
                 --HHHHHHHHHHHHTTB--.-EE--BTTB------HHHHHHTTT-HHHHS--S-SS.GGG-HHHHHHHHHHHHHHHHHHT-SEE-S-BS-HHHHHHH.H CS
       GDC-P  47 ksEeellaelekiasknkv.vksfiGaGyydtilPaviqrnilenpewytaYtPYq.aEisqGrLeallnfqtlvadltGldianasllDegtAaaE.A 142
                  sE+++l+ l+++a+ +    + +i  G   ++l a+ + + ++ +e+     P+  +  + G  e + +    +a++tG d    s+  ++   +E A
  KIR61940.1 465 RSETAMLRYLRRLADFDYAlDRGMIPLGSCTMKLNATTEMEPVSWAEFAHV-HPFApPSQTAGYRELIAQLEGWLAEVTGYDA--VSVQPNAGSQGElA 560
                 667777777777777666545667777777777776666666666666433.3443134455666666666667777777664..35555555555533 PP

                 HHHHHHH-SSS--EEEEETTS-HHHHHHH.HHHHGGGT-EEEEE-GGG--S-.............S-EEEEEEEES-TTSB---.-HHHHHHHHHTT-E CS
       GDC-P 143 vllaaraskkkakkvvvdkkvhpqtlevl.ktrakglgieivevdlteekvtd..........kekevagvlvqypnteGried.lkelvekakkkksl 229
                  lla ra +  + +   d  + p +++      a   g+ +v+v + +++  d          +++ +a+++v yp+t+G  e  + +l +k+++    
  KIR61940.1 561 GLLAIRAYHADRGQGHRDVCLIPSSAHGTnAASAVMAGMRVVVVGCDDDGNVDlvdldakidkHRDALAAIMVTYPSTHGVYETgIAQLCAKVHDAGGQ 659
                 444444444443333333333443333220233445566666666666655555666666664778899***********998779*********9988 PP

                 EEE.EE-TTGGGTB--HHHHT-SEE.EEE-TTTT---GGG----EEEEE-GGGGGG--S-EEE CS
       GDC-P 230 vvv.aadllaLtllkpPgelgaDiv.vGsaqrfGvPlgyGGPhagffAvkeklkRkiPGRlvG 290
                 v v  a+l aL+ ++ Pg +gaD+  +   + f +P g GGP +g +Av+++l+  +PG   G
  KIR61940.1 660 VYVdGANLNALVGFAKPGRFGADVShLNLHKTFCIPHGGGGPGVGPVAVRQHLAPFLPGDPCG 722
                 887369999***************84677889**************************97666 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.096   5.7e+02     152     209 ..     214     271 ..     212     369 .. 0.73
   2 !   22.8   0.1   6.4e-09   3.8e-05      85     221 ..     574     716 ..     557     740 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.096
                  TTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTTTTSSTT-E CS
  Aminotran_5 152 tGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghKllgPtGiG 209
                  +G + +   ++++a+++galv v a   ++       ++g+D++a +++ +  P G G
   KIR61940.1 214 SGAVRDHTPLVEAAHAAGALVTVAADLLALTLLRAPGEIGADIAAGTTQRFGVPMGFG 271
                  6888899999999999999999977777777777777888888888888777777764 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 6.4e-09
                  -TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEE.EESB.ETTTTE.B--HHHHHHHHHHTT-EEEEE-TT. CS
  Aminotran_5  85 lkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklva.ithv.snvtGt.iqpveeigklakkkgalvlvDaaq. 178
                  + ++d  ++ ++ h  n   + +++   g++v+v+  d++g++dl +l++++++  +++a i+ +  +++G+    ++++++ ++++g  v vD+a  
   KIR61940.1 574 QGHRDVCLIPSSAHGTNA--ASAVM--AGMRVVVVGCDDDGNVDLVDLDAKIDKHRDALAaIMVTyPSTHGVyETGIAQLCAKVHDAGGQVYVDGANl 667
                  566666677777777776..44444..69***********************855555441443325899**8899********************85 PP

                  TTTTS---HHHHTESEEEEETTT.TTSS.....TT-EEEEEEHHHHHTS CS
  Aminotran_5 179 avghipidvkklgvDflafsghK.llgP.....tGiGvlyvrkellekl 221
                  +++    +  ++g+D+  +  hK ++ P     +G+G + vr++l   l
   KIR61940.1 668 NALVGFAKPGRFGADVSHLNLHKtFCIPhggggPGVGPVAVRQHLAPFL 716
                  6788889999*************99988222224677777777666555 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1     0.041   2.4e+02     226     272 ..     318     368 ..     277     386 .. 0.82
   2 !   19.7   0.1     7e-08   0.00042      34     169 ..     531     665 ..     523     697 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.041
                      HHHHT---SSTHHHHH..HHHHHHHHS....STTHHHHHHHHHHHHHHHHH CS
  Beta_elim_lyase 226 rkylggglrqagvlaaleagiraleeg....laslerdhktaeqlaeklel 272
                      r++  +++  a vl a++ag++a+ +g     a ++r h++a++la++l++
       KIR61940.1 318 RERATSNICTAQVLLAVMAGMYAVYHGpdglRAIARRTHAMAARLAAGLRA 368
                      455556677788999999999999999888777889999999999998865 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 7e-08
                      HHHHHHHHHHHTT-SEEEEES....-HHHHHHHHH.HHH--TTEE..EEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS-- CS
  Beta_elim_lyase  34 vnrLedavaelfgkeaalfvp....qGtaAnsill.killqrgee..vivtepahihfdetgaiaelagvklrdlknkeaGkmdlekleaaike 120
                      + +Le  +ae++g++a+   p    qG  A  +++ ++++ rg++   ++ +p+  h  ++ a a++ag++++ +  +++G++dl +l a+i++
       KIR61940.1 531 IAQLEGWLAEVTGYDAVSVQPnagsQGELAGLLAIrAYHADRGQGhrDVCLIPSSAHG-TNAASAVMAGMRVVVVGCDDDGNVDLVDLDAKIDK 623
                      6788889999****99987542122677777777777788876541169999998885.56778899*************************** PP

                      S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEET CS
  Beta_elim_lyase 121 vgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgA 169
                         h++  ++i++t          v    ++++ a +++ g ++ +DgA
       KIR61940.1 624 ---HRDALAAIMVTYPSTH----GVYETGIAQLCAKVHDAGGQVYVDGA 665
                      ...999******9987664....35667899999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (940 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 6829.46
//
Query:       KIR61941.1  [L=66]
Description: hypothetical protein TK50_31380 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       199  (0.0110993); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 518.25
//
Query:       KIR61942.1  [L=390]
Description: anthranilate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-63  214.5   0.0    2.3e-63  214.2   0.0    1.1  1  Chorismate_bind  chorismate binding enzyme


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.2   0.0   1.3e-67   2.3e-63       3     258 .]     134     379 ..     132     379 .. 0.96

  Alignments for each domain:
  == domain 1  score: 214.2 bits;  conditional E-value: 1.3e-67
                      CHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETTSEEEEECEEEEEEHSS CS
  Chorismate_bind   3 edYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleledsellgaSPElllkveggrrietepiaGTrargk 96 
                      +++a+av++v+++i +gd+y+ +l     a+     +p  ++++l +   a y + l+ ++  + +aSPE+l+ ve+g r++t+pi+GTr+   
       KIR61942.1 134 HQHAAAVTAVRAAIGRGDVYQTNLVGHAAAP--YTGNPHPALARLARLPGARYGGTLHGPGWAIGCASPETLIAVEAG-RLVTRPIKGTRPA-- 222
                      57899**************************..889999*************************************77.**********944.. PP

                      SHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEESHHHH CS
  Chorismate_bind  97 tpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPkkra 190
                            a ++ell+++KeraEh mivdl rndL++va +g+v+v+elf+v+r   +++  st+++  +++++l+dll a++P+g+vtGaPk +a
       KIR61942.1 223 ----TPAGRTELLTSAKERAEHIMIVDLERNDLARVAATGTVTVDELFAVRRWCDLWQAESTVSAAPADGLGLADLLHAICPGGSVTGAPKLAA 312
                      ....446789************************************************************************************ PP

                      HHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 191 meiidelEearRgvYaGavgyldadgeaelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                      +++i++ E+  Rg+  Ga+g++   g+++l ++IRta +++ +l+ +aG+GI++dSdp+aE++E  aK
       KIR61942.1 313 CDVIAACEPVGRGAAMGALGWIA-PGHLDLGLTIRTAAADAHHLHTWAGGGITWDSDPDAEVAEAAAK 379
                      **********************9.568*************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3084.69
//
Query:       KIR61943.1  [L=167]
Description: peptide deformylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-37  128.5   0.0      2e-37  128.3   0.0    1.0  1  Pep_deformylase  Polypeptide deformylase


Domain annotation for each model (and alignments):
>> Pep_deformylase  Polypeptide deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.3   0.0   1.1e-41     2e-37       1     156 [.       3     148 ..       3     151 .. 0.96

  Alignments for each domain:
  == domain 1  score: 128.3 bits;  conditional E-value: 1.1e-41
                      .GG---TT-GGGCS--B---BSSHHHHHHHHHHHHHHHHHC.T-SEEEGGGGT--BSEEEEECCSS-ETT....SEEEEEEEEEEECSCEEECC CS
  Pep_deformylase   1 vkkivkvgdpvLrekakpvekfeskelekllekmletmkea.kgvgLAApQigvnkrlfvielpseeeeeeenkeltvliNPkitskseetitd 93 
                      +++i  +gdpvLr+ ++pv++f+ + l+ l+ ++++t+  a    g+AA+Qigv+ ++fv++ + +++          +iNP + + s+et++d
       KIR61943.1   3 MRPIRIIGDPVLRAACEPVTTFDAD-LRALVTDLMDTLLGApGRAGVAANQIGVPAQVFVYDADGHRG---------HMINPTL-ELSDETQDD 85 
                      678999*****************88.***************77788*******************999.........69*****.********* PP

                      EE--TTSTT--CEEEEESCEEEEEE-TTS-EEEEEEEHHHHHHHHHHHHHCTT--GGGGC-TT CS
  Pep_deformylase  94 eEgClSvpgieakVeRskrikvkyldltgkeveleaegllArvlqHEiDhlnGklfidridks 156
                       EgClS+pg++   +R+ + + +++d +g++ ++  +g+lAr+lqHE+Dhl+G l++d ++  
       KIR61943.1  86 DEGCLSIPGLYFPTPRALHATAHGFDQHGEPLTISGSGFLARALQHETDHLHGRLYVDTLRGD 148
                      **********************************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1352.82
//
Query:       KIR61944.1  [L=203]
Description: malonic semialdehyde reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-17   63.5   0.0    3.3e-17   63.1   0.0    1.1  1  Nitroreductase  Nitroreductase family


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   1.8e-21   3.3e-17       5     170 .]      24     181 ..      21     181 .. 0.96

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 1.8e-21
                     -B---B-S----HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEEEEE--- CS
  Nitroreductase   5 rSiRkFddepvpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvlivivat 99 
                     r+ ++F+depv++e+l  i + a + P+a n+qp+r++ ++++++r +l+ +++e +++++a+a  + +       +   ++ ++ p ++ i+ +
      KIR61944.1  24 RTANTFTDEPVTDEHLHAIFDLAKYPPTAANTQPLRVLYIRPGDARNRLLTHMAEGNRTKTATAPVVAV------LAADTDFHDHIPRIFPIRPE 112
                     8999*************************************************************9999......56788888889999999*** PP

                     TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEEE- CS
  Nitroreductase 100 ldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliavGy 170
                     l +   ++++ ++  a ++a + +   lLa +a+Gl++ p+ gfd+a   v++ +  ++ ++ ++++ +G+
      KIR61944.1 113 LRDGLAADPAARDTMARFNATLQIAYWLLAVRAAGLAAGPMAGFDAAG--VDREFFADSSWRSLLVVNIGK 181
                     ************************************************..********99*******9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 1827.13
//
Query:       KIR61945.1  [L=259]
Description: endonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-13   49.4   2.0      6e-13   48.8   2.0    1.2  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   2.0   3.4e-17     6e-13       1     233 []       4     251 ..       4     251 .. 0.75

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 3.4e-17
                    EEEEESTGCHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH........................TTCEEEEECCH.....ECS CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxx.....xxx RF
  Exo_endo_phos   1 ltwNvngqaspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllal........................ggflgasstsp.....tgg 67 
                    +t+N++++ ++ ++   +  rl   ++a daDvl+LQEvd d+    ++ l +                        +         +       g
     KIR61945.1   4 ATFNLLHG-RSLTDGLVDPHRLTTAVAALDADVLALQEVDRDQSRSGNHDLTAiaahalhapqhrfaaalvgtpgehF---------RplrhdDDG 89 
                    79*****9.77777777778899999999*************987777777558888888877777666665555442.........044455569 PP

                    SSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE..............................CCCHHGHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................xxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  68 gggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlni..............................ashrdhdlvrdlqllall 133
                     g  ++g ++  r+p+++++++ +     ++                +                                 + h +    + +++l
     KIR61945.1  90 HGEPRYGIGLITRHPVRTWQVTRLKPAPVRSPV--------------YipgpdggllllqdeprvvlaavldtphgdiTVAATHLSFVPGWNAHQL 171
                    9999************88833322222222222..............13344444456666799999999************************** PP

                    HHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTHHSSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEEC.... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.... RF
  Exo_endo_phos 134 lqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapapvglyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrr.... 225
                    +q  ++ ++ +ap i++GD+N          ++t +++ +       +++  ++pty++  ++  lD+ila   l+               r    
     KIR61945.1 172 RQTVRALRALPAPRILLGDLNL---------PATPARLIS------GWTPLARRPTYPATHPRIQLDHILADRHLRH--------------Rlppv 238
                    **********************.........444444443......5699999*******************52222..............12222 PP

                    .....TSSCSSSB CS
                    .....xxxxxxxx RF
  Exo_endo_phos 226 .....ealtlSDH 233
                         +  t+SDH
     KIR61945.1 239 tatatPLSTISDH 251
                    2233578899**9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2021.25
//
Query:       KIR61946.1  [L=335]
Description: integrase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-22   80.7   0.0    1.7e-22   80.0   0.0    1.3  1  Phage_integrase  Phage integrase family
    3.6e-08   33.6   0.0    1.3e-07   31.8   0.0    2.0  1  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   1.9e-26   1.7e-22       9     170 ..     131     307 ..     126     309 .. 0.89

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 1.9e-26
                      HHHHHCCGC.......HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHH.....CHC CS
  Phage_integrase   9 erllaalee.......slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellska.....lee 90 
                      e+llaa+ +       + + rd ++l+l++  GlR sEll+Lrv  l  + g+ +v e  gKg++ r+vp+  e+  +l  +l+ +     ++ 
       KIR61946.1 131 EQLLAAVSRedgrqrdPWPERDVAVLALALCAGLRLSELLALRVASLAGRPGERRV-EVAGKGGRPRVVPVEPELDGVLVAYLESRarrfgSRS 223
                      67777777767777778889999*********************************.899************9999999999999955566555 PP

                      CTTTSBSSBETTSSB--HHHHHHHHHHHHHHCT-S....SC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCC CS
  Phage_integrase  91 aeksellfaskrgkplsrqtvrkafkraveeagie....kpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthva 170
                        +++ l++ ++g+pl r  ++  +++  ++ag+       ++ H lRh+fat+L+e g++  ++++llGH+s+++ q+Y++v+
       KIR61946.1 224 VRPESPLLVDRQGEPLRRGGLQYLVESCYRRAGVAdrvpRGARLHALRHTFATRLAEDGASAAEIMRLLGHASLASSQTYIEVT 307
                      555557888889***********************9988889**************************************9987 PP

>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   1.5e-11   1.3e-07       1      84 []      13     101 ..      13     101 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.5e-11
                      HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHH........TS--TTT--HHHHHHHHHS----------HHHHHHHHHHHHHHHHHTT CS
  Phage_int_SAM_1   1 leqfleyLikerglspnTlraYrrdLrrflkflae.......rgkesleqlttedvraflaeleeeglsatslarrlsalrsFfqflvreg 84 
                      +e+fl  L + r  sp+Tl+aYrrdLr++   +ae        +   +++l+++ +ra  a+ ++ + + +s++r+ s+  sFf+flv+eg
       KIR61946.1  13 VEEFLTALAT-RKPSPHTLAAYRRDLRAVAALAAEvvtpvlpPEALPVAALSPRVMRAAFARFAAPR-AVASVHRAWSTWNSFFSFLVAEG 101
                      5789999995.555********************9886665556667889999999*9999999986.*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2354.17
//
Query:       KIR61947.1  [L=242]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-59  200.6   3.1    3.3e-59  200.3   3.1    1.0  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
      9e-49  165.6   0.6    1.1e-48  165.3   0.6    1.0  1  adh_short       short chain dehydrogenase
    1.7e-17   63.9   1.7    2.4e-17   63.4   1.7    1.1  1  KR              KR domain
    1.9e-05   24.3   1.0    6.6e-05   22.5   0.4    1.9  2  Epimerase       NAD dependent epimerase/dehydratase family
    0.00039   19.9   0.9     0.0009   18.7   0.1    1.8  2  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
  ------ inclusion threshold ------
       0.13   12.1   4.4       0.14   12.0   3.2    1.5  1  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.3   3.1   1.1e-62   3.3e-59       3     233 ..      11     242 .]       9     242 .] 0.94

  Alignments for each domain:
  == domain 1  score: 200.3 bits;  conditional E-value: 1.1e-62
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                    +gIG+a+A++la +G +++++++++       v+++++ + +++ +++D td+++v++l++++ +++g l +lvnnag++ +  gp++++  e+++
    KIR61947.1  11 SRGIGAATARRLAHAGHHIAIAYRRDHTaaTGVVADIQATGRNAIaVQADTTDPDAVTHLFDTA-ATLGPLTGLVNNAGVTSP-IGPLTDLRAEDLR 105
                   59***********************999756778888887777756****************96.579***************.************* PP

                   HHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTT.HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHH CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeggsivnlssvgaervvpnyn.aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleel 192
                   +++dvnl +++l+a++a++ +++gg+ivn+ss +a+ + p+   +y+aaKaa   lt  lA+el+p+giRvN v+pg+i+T++  +++g+++  + +
    KIR61947.1 106 HVVDVNLIGYVLCAQQAARRLTRGGAIVNVSSAAATLGSPGEYvHYAAAKAATDTLTVGLAKELAPHGIRVNGVAPGIIRTDLH-ALSGAPDRADTA 201
                   **************************************998777*************************************995.5788999***** PP

                   HHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 193 earaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   + r+plgr+g+p+e+a a+++L+s+easy tG++l v gGl
    KIR61947.1 202 AGRIPLGRAGEPDEIATAIAWLLSPEASYATGTVLRVSGGL 242
                   ****************************************6 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.3   0.6   3.6e-52   1.1e-48       2     188 ..       4     190 ..       3     196 .. 0.95

  Alignments for each domain:
  == domain 1  score: 165.3 bits;  conditional E-value: 3.6e-52
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCSH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfselse 98 
                 v +vtG+s+GIG a+a++la +G ++++ + r   ++  v++ ++++g++a+a+q+D td ++v  l+++a + lg+l  LvnNAG+ +  gp  +l +
  KIR61947.1   4 VTIVTGGSRGIGAATARRLAHAGHHIAIaYRRDHTAATGVVADIQATGRNAIAVQADTTDPDAVTHLFDTA-ATLGPLTGLVNNAGVtSPIGPLTDLRA 101
                 679*************************88888888899*******************************9.99*************8889******** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TT.BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvag.vaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                 e+ + v++vNl g++l+++++++ +   ++G+IvnvsS a+  +++g ++ Y+A+Kaa + lt  lakelap+girvn+vaPG+++Td+ +
  KIR61947.1 102 EDLRHVVDVNLIGYVLCAQQAARRLT--RGGAIVNVSSAAATLGSPGeYVHYAAAKAATDTLTVGLAKELAPHGIRVNGVAPGIIRTDLHA 190
                 ************************87..9************9999863789************************************9875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   1.7   7.9e-21   2.4e-17       4     160 ..       6     162 ..       4     180 .. 0.90

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 7.9e-21
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------.---TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr.dklleemt 101
                 ++tGG  g+G ++ar la+ g +h+++  R+   + +++  +a ++a+g +  +v+aD +d+dav++l++++  + +p++G ++ Agv+   ++l+++ 
  KIR61947.1   6 IVTGGSRGIGAATARRLAHAG-HHIAIAYRR--DHTAATGVVADIQATGRNAIAVQADTTDPDAVTHLFDTAA-TLGPLTGLVNNAGVTSpIGPLTDLR 100
                 8****************9888.588999899..56677789******************************97.667***********99579****** PP

                 HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-.HHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagq.anYaaaNaflDala 160
                 aedl++v+   + G     +  ++  ++   +v +SS+a++lgs+g+ ++Yaaa a  D+l 
  KIR61947.1 101 AEDLRHVVDVNLIGYVLCAQQAARrlTRGGAIVNVSSAAATLGSPGEyVHYAAAKAATDTLT 162
                 ***************999888777678899***************98468*********986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.4   2.2e-08   6.6e-05       2      62 ..       6      73 ..       5      90 .. 0.92
   2 ?    0.0   0.0      0.16   4.7e+02     141     154 ..     150     163 ..      96     176 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.2e-08
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHH CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfke 62
                +VtG++  iG+a++++l+ +g+++    r+ ++ +t+  +d+         v++d td++a++ lf++
  KIR61947.1  6 IVTGGSRGIGAATARRLAHAGHHIAIAYRRDHTAATGVVADIqatgrnaIAVQADTTDPDAVTHLFDT 73
                7**********************999999999999999998899999999999999999999999985 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHH CS
   Epimerase 141 pYaaaKlageklve 154
                  YaaaK+a + l+ 
  KIR61947.1 150 HYAAAKAATDTLTV 163
                 46666666666655 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1     3e-07    0.0009       2      73 ..       7      73 ..       6      76 .. 0.92
   2 ?   -0.9   0.1      0.28   8.3e+02     153     166 ..     151     164 ..     148     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3e-07
                   EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHH CS
  GDP_Man_Dehyd  2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllae 73
                   +TG++  iG+ +a++L + g+++ +  rr+ + +tg ++ ++      + +n   +++D tD +++++l++ 
     KIR61947.1  7 VTGGSRGIGAATARRLAHAGHHIAIAYRRDHTAATGVVADIQA-----TGRNAIAVQADTTDPDAVTHLFDT 73
                   9****9*********************************9974.....3568899**************986 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.28
                    HHHHHHHHHHHHHH CS
  GDP_Man_Dehyd 153 YaaaKlyadwivvn 166
                    YaaaK++ d+++v 
     KIR61947.1 151 YAAAKAATDTLTVG 164
                    **********9986 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.2   4.7e-05      0.14       1      60 [.       9      73 ..       9      77 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.7e-05
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH....HHHCT.TTCEEEE--TT-CCHHHHHHTT CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpekla....eleae.eglevvegdvtdvedlaealkg 60
                    G++ ++G + +++l+++g+h   a+ R+   ++    +++a+  ++ +v++d td++++++ ++ 
      KIR61947.1  9 GGSRGIGAATARRLAHAGHHIAIAYRRDHTAATgvvaDIQATgRNAIAVQADTTDPDAVTHLFDT 73
                    8999*************8666677777766665444466654468889***********998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1822.83
//
Query:       KIR61948.1  [L=154]
Description: peroxiredoxin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-28   98.2   0.0    3.4e-28   98.0   0.0    1.0  1  AhpC-TSA    AhpC/TSA family
    5.6e-15   55.3   0.0    5.9e-15   55.2   0.0    1.0  1  Redoxin     Redoxin
  ------ inclusion threshold ------
      0.019   15.1   0.0      0.024   14.8   0.0    1.2  1  AhpC-TSA_2  AhpC/TSA antioxidant enzyme
      0.074   12.6   0.0      0.092   12.3   0.0    1.1  1  DUF899      Bacterial protein of unknown function (DUF899)


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.0   7.6e-32   3.4e-28       1     122 [.       7     132 ..       7     134 .. 0.95

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 7.6e-32
                 TTSB----EEESTTCEEEECHHH..TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHHHH CS
    AhpC-TSA   1 vgdkapdfelknadgetvslsdy..kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsDeegkvaka 97 
                 vgd + dfel+++ g + +ls++  +g pvvlffyp++ + +Ct+e + +++l+ ef++ g++ +g+s d +e++++f + +++ +pllsD +g va++
  KIR61948.1   7 VGDLVEDFELPDETGAPRRLSEFlaSG-PVVLFFYPAAMTRGCTAESCHFRDLAAEFAAVGAQRVGISRDAVERQAEFSRLHGFDYPLLSDVDGVVARR 104
                 7999*******************8666.*********************************************************************** PP

                 TT-EETT...TTECSCEEEEE-TTSBEE CS
    AhpC-TSA  98 ygvlkee...kglalratfvidkegkir 122
                 +gvl+        + r tfvi  +  ++
  KIR61948.1 105 FGVLRRLplgPLSTRRMTFVIGVDRRVV 132
                 ****99999989999******9888776 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   1.3e-18   5.9e-15       2     129 ..       7     133 ..       6     152 .. 0.85

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 1.3e-18
                 TTSBB---ECCEETTCEEEEEHHH.HTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHHTT-TSEEEE-TTSHHHH CS
     Redoxin   2 agdkaPdftlplaatdgnsvslse.fkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgkeglkfpvlsDgsaaftk 99 
                 +gd + df+lp+  + g +  lse ++ ++vv++f+p+a +  C+ae + +++la+++++ g + v+++ d  + + ef   +g ++p+lsD ++ +++
  KIR61948.1   7 VGDLVEDFELPD--ETGAPRRLSEfLASGPVVLFFYPAAMTRGCTAESCHFRDLAAEFAAVGAQRVGISRDAVERQAEFSRLHGFDYPLLSDVDGVVAR 103
                 7999******99..*******************************************************999999************************ PP

                 HTT-TTEEE.GGG.EEE-EE.EEEEETTEEEE CS
     Redoxin 100 alGlrleedaseg.lrtpry.avidedgkvvy 129
                  +G+        g l t+r+ +vi  d +vv+
  KIR61948.1 104 RFGVL--RRLPLGpLSTRRMtFVIGVDRRVVE 133
                 ***55..4445556666665155556665544 PP

>> AhpC-TSA_2  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   5.3e-06     0.024       3      69 ..      56     124 ..      54     154 .] 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.3e-06
  AhpC-TSA_2   3 srdkpeldaagvklvaigigdps.akkFvkltgfpfelyvDpsaklyqalglkrglklkl.aplslqka 69 
                 +++++e++a g + v+i+ + ++   +F +l gf+++l+ D ++ + +++g+ r+l+l+  ++++++ +
  KIR61948.1  56 RDLAAEFAAVGAQRVGISRDAVErQAEFSRLHGFDYPLLSDVDGVVARRFGVLRRLPLGPlSTRRMTFV 124
                 56789999**************66******************************999987334445544 PP

>> DUF899  Bacterial protein of unknown function (DUF899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     2e-05     0.092      85     147 ..      45     107 ..      35     125 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2e-05
      DUF899  85 CpgCslladhvdgalahLeardvtlavvsraplekleaykrrmGwtlpwvssaesdfnrdfnv 147
                  +gC++   h+   +a+++a + + + +sr ++e+ +++ r  G++ p+ s+++  + r f+v
  KIR61948.1  45 TRGCTAESCHFRDLAAEFAAVGAQRVGISRDAVERQAEFSRLHGFDYPLLSDVDGVVARRFGV 107
                 46888888888888999*************************************999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1184.71
//
Query:       KIR61949.1  [L=332]
Description: cytochrome C oxidase assembly protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.1e-122  406.7  31.3     7e-122  406.5  31.3    1.0  1  Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
  ------ inclusion threshold ------
      0.017   15.6   2.2      0.017   15.6   2.2    4.1  3  FtsX             FtsX-like permease family
       0.58    8.4   4.2       0.87    7.8   4.2    1.3  1  DUF2070          Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  406.5  31.3  1.2e-125    7e-122       1     303 []       3     320 ..       3     320 .. 0.97

  Alignments for each domain:
  == domain 1  score: 406.5 bits;  conditional E-value: 1.2e-125
  Cyt_bd_oxida_II   1 lqliwflligvllagYvvldGfDlGvGillpllakkdeerrlllnsigpvWdgnevWLvtaggalfaaFPlayatlfsglylpllliLlglilR 94 
                      l++iwfll++vl++gY++l+GfD+GvG+llp+l+++d+err+l+n+igpvWdgnevWL+tagga+faaFP++yatlfsg+ylpllliLl+li R
       KIR61949.1   3 LTTIWFLLVAVLFTGYFILEGFDFGVGMLLPVLGRDDRERRVLINTIGPVWDGNEVWLITAGGAMFAAFPEWYATLFSGFYLPLLLILLALIAR 96 
                      689******************************************************************************************* PP

  Cyt_bd_oxida_II  95 gvafefrskaeskrwrklwdlaffigSllaalllGvalgnllqGvpfdad.ey.gflsdllnpfallvglllvalflllGalylalktegelqe 186
                      gvafe+r+k+++++w+++wd a+f+gS+++a+l+Gva++n+++Gvp+dad ey g l+dll+p+all+gl+++ lfl++Ga++lalkt+g++++
       KIR61949.1  97 GVAFEYRHKRPEPTWKRRWDQAIFWGSAIPAVLWGVAFANIFRGVPLDADhEYvGGLTDLLHPYALLGGLTTLGLFLTHGAVFLALKTTGDIRH 190
                      **********99***********************************988867688889*********************************** PP

  Cyt_bd_oxida_II 187 rarrlalvlalvllvllvvvllwtll.......lvllllavlalllavlllrkkreglaflasaltvllvvlllavslfPyllpss......lt 267
                      rar+lal+l+  ++v++v++l wtl+       ++l++ a++all+++ ++r++reg+af+ +al+++l+v++l+++lfP+++ps+      lt
       KIR61949.1 191 RARNLALKLGTGTAVAAVAFLGWTLTirsstaaIALAAGAAIALLAGLTAARARREGWAFTGTALAIALAVATLFAALFPNVMPSTldpagtLT 284
                      ************************99999998667777788888888899999***************************************** PP

  Cyt_bd_oxida_II 268 ianaasseytlkvmlivalillplvlaytawlyrvf 303
                       +naas++ytlk+m++va+i++p+vlay+ w+y+vf
       KIR61949.1 285 ATNAASTPYTLKIMTWVAVIFTPIVLAYQGWTYWVF 320
                      ***********************************9 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   5.1       2.3   1.4e+04      61      83 ..      70      92 ..       3     106 .. 0.58
   2 ?   -2.4   5.1       1.2     7e+03      63      83 ..     216     236 ..     120     245 .. 0.62
   3 ?   15.6   2.2   2.8e-06     0.017      24      81 ..     246     312 ..     243     323 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.3
        FtsX 61 kisidlitvliiivlllllalla 83
                ++   + t++ ++ l lll+lla
  KIR61949.1 70 AFPEWYATLFSGFYLPLLLILLA 92
                33333334444444444444444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
        FtsX  63 sidlitvliiivlllllalla 83 
                 +i  +t +i+++ +  +alla
  KIR61949.1 216 TIRSSTAAIALAAGAAIALLA 236
                 333333333333344444444 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 2.8e-06
        FtsX  24 eillitlvalviGlglgllaaqllsdvllssvf......s...selkisidlitvliiivlllllal 81 
                 e++++t  al+i+l++++l+a l+ +v+ s ++      +    +++++++++t++++i+  ++la 
  KIR61949.1 246 EGWAFTGTALAIALAVATLFAALFPNVMPSTLDpagtltAtnaASTPYTLKIMTWVAVIFTPIVLAY 312
                 99*****************************885544441555999999999999999999888875 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.2   0.00015      0.87      37     169 ..     129     310 ..      66     328 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00015
     DUF2070  37 k...........................lfgillfglpalvaflltlpvlrilggr....ltykrslflalltelivviisllaillsallqalvllal 104
                                             l+ + l+g  + + ++lt+ ++ ++ ++     +  r+l l l t + v+++ +l+ +l+    ++++ a+
  KIR61949.1 129 LwgvafanifrgvpldadheyvggltdlLHPYALLGGLTTLGLFLTHGAVFLALKTtgdiRHRARNLALKLGTGTAVAAVAFLGWTLT---IRSSTAAI 224
                 0333333444566666666777777777666777777767777777766655555556536666779999999999999999999998...68899999 PP

     DUF2070 105 vlslalvfalrllvlvavsdesllkavlpaliqpllailllvly.....................fspesfllllllslifalavy 169
                 +l+  +++al   ++ a ++++ +  +  al++ l+++ l+ ++                     ++p++  ++  + +if  +v+
  KIR61949.1 225 ALAAGAAIALLAGLTAARARREGWAFTGTALAIALAVATLFAALfpnvmpstldpagtltatnaaSTPYTLKIMTWVAVIFTPIVL 310
                 99999999999999999999998888888888877777777766688888888887777776665434444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 2158.95
//
Query:       KIR61950.1  [L=476]
Description: cytochrome BD ubiquinol oxidase subunit I [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.1e-171  571.2  23.6   1.2e-171  571.0  23.6    1.0  1  Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I
  ------ inclusion threshold ------
        6.1    7.0   7.3       0.28   11.3   0.5    2.4  3  CcmD            Heme exporter protein D (CcmD)


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  571.0  23.6  1.3e-175  1.2e-171       2     417 ..      14     453 ..      13     454 .. 0.99

  Alignments for each domain:
  == domain 1  score: 571.0 bits;  conditional E-value: 1.3e-175
  Cyt_bd_oxida_I   2 aRlqfaltavfHflfvpltlGlalllailetlylrtgdekykklakfwgklfainFavGvvtGivlefqfgtnWseysrfvGdifgapLaiEgll 96 
                     aR+qf++t+v+Hflfvplt+Gl++l+ail+t++ rtg+e+y+kl+kf+gklf+inFa+GvvtGiv+efqfg+nWs+ysrfvGdifgapLaiE+l+
      KIR61950.1  14 ARWQFGVTTVYHFLFVPLTIGLSVLVAILQTMWHRTGNERYLKLTKFYGKLFLINFAMGVVTGIVQEFQFGMNWSDYSRFVGDIFGAPLAIEALV 108
                     9********************************************************************************************** PP

  Cyt_bd_oxida_I  97 AFflEstflglmlfgwdrvskklhllatwlvaigtllSalwIlaanswmqtPvGaelnpdtgraeltdflavlfnpsalakflHtvlaalltaaf 191
                     AFflEstf+gl++fgwdr++k+lhl+a+w++aigt+lSa++Ilaans+mq+PvG+++npd+graeltdf+avl+n++al++f+Ht+++++l+a+ 
      KIR61950.1 109 AFFLESTFIGLWIFGWDRLPKRLHLAAIWAAAIGTNLSAYFILAANSFMQNPVGYRINPDSGRAELTDFVAVLTNKVALVTFPHTLAGSFLVAGS 203
                     *********************************************************************************************** PP

  Cyt_bd_oxida_I 192 fvagvsawyllr....rekefarkslkialvvalvaallqallGdlsgkevaetqpaKlAAmeglwetee.aplslfgipdeeeeknefaieiPg 281
                     +v+ v  w+++r    +++ ++r + k++ +v+l+++ l++l+Gd +gk ++e+qp+K+AA+egl++te+ a++s++++ + + +++ fa++iP+
      KIR61950.1 204 LVVTVGLWHVMRnrgsADTGAYRFATKFGSWVVLISSTLVLLTGDIQGKIMTEVQPMKMAAAEGLYTTESpASFSVLTVGSLDGSREVFALKIPY 298
                     ************98766666***********************************************999************************* PP

  Cyt_bd_oxida_I 282 llsllatgsldgevkGlndlpk.........eevPpvalvfwsfrimvglgvlllllallalll.........rwllrllllaiplpfiaveaGW 358
                     lls+l tg+++g+v+G+ndl++         ++ P +++++wsfr+m+g+g++ +++all+l+          rwllr+ l++ +lp++a+++GW
      KIR61950.1 299 LLSFLGTGDPNGTVQGINDLQAqyatqygpgNYAPIIPVTYWSFRFMIGFGLAAAAIALLVLWSqrkgrtptsRWLLRAGLAMPVLPLLANSFGW 393
                     ********************87****************************************99*********9********************* PP

  Cyt_bd_oxida_I 359 ivtevGRqPWivygllrtadavsp.vsagevllslilflllylvLlvvevylllklikkg 417
                     i+te+GRqPWiv g + t+++vs+ vs +evl+s+++f+l+y++L+v+e++lll+++k+g
      KIR61950.1 394 IFTEMGRQPWIVFGEMLTRNGVSRtVSLTEVLTSFTAFTLIYATLAVIEFKLLLRYAKAG 453
                     *********************************************************987 PP

>> CcmD  Heme exporter protein D (CcmD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       1.5   1.3e+04      16      29 ..      35      48 ..      34      50 .. 0.73
   2 ?   -3.3   0.1       1.1   9.9e+03      13      27 ..     200     214 ..     196     217 .. 0.50
   3 ?   11.3   0.5   3.2e-05      0.28      11      30 ..     348     367 ..     347     368 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.5
        CcmD 16 lvlagLilwslrdr 29
                l++++ il++ + r
  KIR61950.1 35 LSVLVAILQTMWHR 48
                56777788888766 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.1
        CcmD  13 itllvlagLilwslr 27 
                 ++  +++ + lw ++
  KIR61950.1 200 VAGSLVVTVGLWHVM 214
                 444455555555555 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 3.2e-05
        CcmD  11 YgitllvlagLilwslrdrr 30 
                 +g++++++a+L+lws r++r
  KIR61950.1 348 FGLAAAAIALLVLWSQRKGR 367
                 89****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3298.49
//
Query:       KIR61951.1  [L=257]
Description: acyl-phosphate glycerol 3-phosphate acyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-17   63.9   0.0    1.7e-17   63.3   0.0    1.2  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   9.5e-22   1.7e-17      12     133 ..      42     160 ..      30     162 .. 0.91

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 9.5e-22
  Acyltransferase  12 ekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegklvviFPEGtrsr 105
                      + gp+il+aNH s +D+l+l+++  +++    ++++a   l++ pllg +mr++g+  +dR + a  + +l+ ++ ++ +g +++++PEG+   
       KIR61951.1  42 RRGPLILAANHLSPFDPLVLAAACRARG--VSPRFMATGGLFRAPLLGAAMRRAGHLRVDR-GTAAVHRALDDAACAVAAGSVILVYPEGRIGL 132
                      479*******************997777..69*****************************.9999**************************99 PP

  Acyltransferase 106 egel..lpfkkGlvrlaakakkgvpivPva 133
                      + +l   + k+G +rla+    g ++vPva
       KIR61951.1 133 DPGLwpERGKTGTARLALAS--GATVVPVA 160
                      999978889***********..******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1760.47
//
Query:       KIR61952.1  [L=255]
Description: glycerophosphodiester phosphodiesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-34  118.8   0.0    2.2e-32  112.8   0.0    2.1  1  GDPD          Glycerophosphoryl diester phosphodiesterase fam
      2e-08   34.4   0.0    1.9e-07   31.3   0.0    2.4  2  GDPD_2        Glycerophosphoryl diester phosphodiesterase fam
     0.0069   16.6   0.1      0.014   15.7   0.1    1.5  1  PG_binding_3  Predicted Peptidoglycan domain


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   0.0   3.8e-36   2.2e-32       1     258 [.      18     241 ..      18     242 .. 0.77

  Alignments for each domain:
  == domain 1  score: 112.8 bits;  conditional E-value: 3.8e-36
                 TTTTTTTSSTTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH.BGGGS-HHHHHTSTECCTTCCCCSCCCSSGCCB...BHHHHH CS
        GDPD   1 HRGasgnlpEnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagrldvkdltleelkrldkiakenkaqlsenrvrlefpfptleevl 99 
                 HRG  +   EnT e+fa+A+ lG++y+E+Dv+ T Dgv+Vv+HD +l+r+t+  g  ++ dl +++l + + +         + +v     +p+l++vl
  KIR61952.1  18 HRGGAAHGDENTAEAFARAVGLGYRYVETDVHGTVDGVAVVFHDATLRRVTGQPG--RIADLRWADLASVR-V--------GGAAV-----VPRLDDVL 100
                 *******************************************************..**************.3........34566.....9******* PP

                 HHHHHCCSEEEEEEECCCCCCCHHHHHHTCHHHCCCCCSCHHTT..STTCSCEEEESTHHHHHHHHHTCT.............CTEEEEEEHHHHHHC- CS
        GDPD 100 kkpqnvglnieikipmlseakeeeelqivkeilksvdeilkkvlkkadkrkvifssfnpdilkllrekqp.............klpllflteggteaea 185
                    ++v +n+++k +    a++++   ++ e +++             +++v + sf+ + l +lr +++             +l+++ l+ g+  + +
  KIR61952.1 101 GAWPQVRFNVDVKAD---GAIAPTV--AALERVAA-------------GDRVLLASFSDARLARLRAATHgrvatglgargvaRLRVASLH-GRPVRLH 180
                 *98888888888764...3444444..22222222.............3344444444444444444444211111112222225555555.3444444 PP

                 E.EECHCCCCCCCTCCCCHHCCCHCCCEB.CHHHHHHHTT-EEEEBSB-THSHHHHHHHHCCC-SEEEES-HH CS
        GDPD 186 dssleraakfakadallgevsavaeglgdpdlVkraksrglvvhvytvnnedeeemkrlleagvdgvitDfpd 258
                 +     ++ +++ +  +g+ + v+++     ++  a+  gl vhv+t +++  +em+ ll++gvdg++tD+++
  KIR61952.1 181 P-----SVVAVQVPPRYGRLPVVDRR-----FLAYAHGLGLHVHVWTIDEP--AEMHELLDLGVDGIMTDHVG 241
                 4.....79999999999999999999.....********************..******************97 PP

>> GDPD_2  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.24   1.5e+03      12      28 ..      32      48 ..      27      48 .. 0.83
   2 !   31.3   0.0   3.2e-11   1.9e-07       2      29 ..     213     240 ..     212     241 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.24
      GDPD_2 12 vwrelvgaGVdgInTDd 28
                +++ +vg+G +++ TD+
  KIR61952.1 32 AFARAVGLGYRYVETDV 48
                67889*******99995 PP

  == domain 2  score: 31.3 bits;  conditional E-value: 3.2e-11
      GDPD_2   2 vrfWttddeavwrelvgaGVdgInTDdl 29 
                 v  Wt+d +a++ el+++GVdgI+TD++
  KIR61952.1 213 VHVWTIDEPAEMHELLDLGVDGIMTDHV 240
                 567***********************96 PP

>> PG_binding_3  Predicted Peptidoglycan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   2.3e-06     0.014      14      61 ..     109     154 ..     100     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.3e-06
                   ...S---S---HHHHHHH...HHS-HHHHHHHHHHHHHHHHHHHHHHH CS
  PG_binding_3  14 gydvkvDGiiGpkTlaAvearasadedaLlkainlarrefyldlaerr 61 
                     dvk+DG+i p T+aA+  r +a++ +Ll++  +ar +++   +  r
    KIR61952.1 109 NVDVKADGAIAP-TVAAL-ERVAAGDRVLLASFSDARLARLRAATHGR 154
                   479*******87.9****.9******************9998766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1885.91
//
Query:       KIR61953.1  [L=462]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.3e-107  357.8  15.7   1.9e-104  350.0  15.7    2.0  1  ATG22     Vacuole effluxer Atg22 like
    1.7e-10   40.4  60.4    5.9e-08   32.0  18.3    3.0  3  MFS_1     Major Facilitator Superfamily
    4.9e-07   28.7  16.7    1.1e-06   27.5  16.7    1.6  1  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.0  15.7  3.1e-108  1.9e-104       2     477 ..      17     454 ..      16     455 .. 0.94

  Alignments for each domain:
  == domain 1  score: 350.0 bits;  conditional E-value: 3.1e-108
       ATG22   2 tkkellgWylyafaaevfavvavgsfvPllleqlarenGvllsdksapCsakgdeqcvvkflgieidtaSfvlytfslsvllqavvvislsglADygny 100
                 t +e +gWyly++a+++f++++++ f++ +l+++++  +   +  + +C      + +v+ lgi+++  S++ y+ slsv+l ++v+++++++AD++ +
  KIR61953.1  17 TARERRGWYLYDWANSAFQTTVITVFLGPFLTTVTELAAG-CALGAERC------DGYVHPLGIRVAAGSYYPYLISLSVFLTVFVLPVVGAVADRSAH 108
                 56899******************************95444.23444455......56899*************************************** PP

       ATG22 101 rknlLlafaligslstilfllvtpkkYllgavlyivsntcfgaslvllnsfLPllvredpelqeaeeeeeeeeessetaeeeeskelklstriSslGla 199
                 +k+lL ++a+ g+ +ti+f++vt+++Yllg +l++v+n++fga++v++nsfLP+l   d                             +++ iSs+G+a
  KIR61953.1 109 KKRLLGTAAFTGAGATIAFAFVTGERYLLGGALFLVANIAFGAAVVVYNSFLPQLGGPD-----------------------------ERDGISSRGWA 178
                 *******************************************************7666.............................5799******* PP

       ATG22 200 igylgailvqiisilivialgsta.....tfslrlalllvGlwWliftipaalllkkrpgpplp.kglsyliygwkslgrtlkqarklkdvllfLvawf 292
                 igylg+ l+++ +++ v+ l ++          r++++ +G+wW++ft++ + +l++rp    p  g ++l++g+++lgrtl++++ ++ +l+fL+a++
  KIR61953.1 179 IGYLGGGLLLAANLVAVTMLTEEGnpqrtLDLARWSIVSAGVWWAAFTLVPLRWLRERPPAAAPaGGGNVLTDGFRQLGRTLREVKAYPLTLFFLLAFL 277
                 ***********99998888866656779555679*************************555553788******************************* PP

       ATG22 293 llsdgiatvsstavlfaktelkmstaklillsivaviaavlGaflwplvsrrlnlktkktllaiivlfeliplyGllGiilgkiGlkqpwEfyvlavvy 391
                 +++dgi+tv+++a++++++elk+++++li++++++++ a+ Ga+++ +++rr++++  kt+l+ +vl++ + + ++      +++ + p  f++l+  +
  KIR61953.1 278 VYNDGIQTVITLASQYGTEELKLGQSTLITTILLVQFLAFGGALALGALARRIGAW--KTVLLSLVLWTGVIIAAF------RLPAEAPLPFMILGGCI 368
                 ******************************************************99..999999999999988888......7**************** PP

       ATG22 392 glvlgglssysRslfseLiPrGkEaaFFsLyaitdkgssvigplivglItDrtgnirsafvflavLlvvplpllllvdvergrrea 477
                 glvlgg +++sRslfs+LiP+GkE +++++y+i dkg+s++gpl++gl+ + t ++r+++v l++++vv+++ll  v+++r+   a
  KIR61953.1 369 GLVLGGSQALSRSLFSQLIPAGKEGEYYGFYEISDKGTSWLGPLAFGLVFQLTASYRVGLVSLLIFFVVGFALLAAVPIRRAIVAA 454
                 *********************************************************************************98765 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2  10.1   1.6e-07   0.00095     241     351 ..      58     186 ..       8     188 .. 0.69
   2 !   32.0  18.3   9.9e-12   5.9e-08     133     342 ..     176     400 ..     170     402 .. 0.75
   3 !   18.2  16.0   1.6e-07   0.00097      52     174 ..     323     444 ..     323     460 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.6e-07
       MFS_1 241 s...................glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvl.iGfglgfvfp 319
                 +                   g  +  +l++l+ ++++++ +++g+++dr ++++ +ll+ ++++ a + +a++ vt +  ll  +l+l + +++g +++
  KIR61953.1  58 AlgaercdgyvhplgirvaaG-SYYPYLISLSVFLTVFVLPVVGAVADR-SAHKKRLLGTAAFTGAGATIAFAFVTGERYLLGGALFLvANIAFGAAVV 154
                 366666666666666667765.66777799999999999**********.666666666666666777777777775555555555551666******* PP

       MFS_1 320 sllalasdlappeeagtasglfntagslggal 351
                  +++++ +l +p+e+  +s+    +g+lgg l
  KIR61953.1 155 VYNSFLPQLGGPDERDGISSRGWAIGYLGGGL 186
                 **************999988888888888865 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 9.9e-12
       MFS_1 133 Gailgpllgglla.sslg.................Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp...awkallkdpvlw 210
                 G ++g+l ggll+ ++l                   r++ + +++  + + ++ l +l+e+pp+ ++  +          ++++    ++++++ p  +
  KIR61953.1 176 GWAIGYLGGGLLLaANLVavtmlteegnpqrtldlARWSIVSAGVWWAAFTLVPLRWLRERPPAAAPAGGGNV----LTDGFRQlgrTLREVKAYPLTL 270
                 4455555555444222225555666666999999999999999999999999999***999999999999999....5555555444788888888555 PP

       MFS_1 211 illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvl 309
                 ++l+a+l+   g++++ tl   y  e l+l+   ++ +++ l++++++++al +g+l++r+g++++ ll+l+l  +++++ a+  +++ ++ ++++  +
  KIR61953.1 271 FFLLAFLVYNDGIQTVITLASQYGTEELKLG-QSTLITTILLVQFLAFGGALALGALARRIGAWKTVLLSLVLW-TGVIIAAFRLPAEAPLPFMILGGC 367
                 5666666666677778888888999999999.56666669*******9**************966666665555.555555555555588888888899 PP

       MFS_1 310 iGfglgfvfpsllalasdlappeeagtasglfn 342
                 iG+ lg  ++++ +l s+l+p+ + g ++g++ 
  KIR61953.1 368 IGLVLGGSQALSRSLFSQLIPAGKEGEYYGFYE 400
                 ******************************995 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 1.6e-07
       MFS_1  52 lGrlsdrfGrrrvlllglllfalglllllf..asslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.s 146
                 lG+l+ r+G+ +++ll+l+l+    ++++f  ++  + ++++l    Gl  g++ +++ +l++++ p  + g ++g++ ++    + lgpl+ gl+   
  KIR61953.1 323 LGALARRIGAWKTVLLSLVLWTGV-IIAAFrlPAEAPlPFMILGGCIGLVLGGSQALSRSLFSQLIPAGKEGEYYGFYEISDKGTSWLGPLAFGLVFqL 420
                 599*******************99.777774345556669999999************************************************99944 PP

       MFS_1 147 slgWravfyilaivsllafvlfllllpe 174
                  +++r+  + l i+++++f     ll +
  KIR61953.1 421 TASYRVGLVSLLIFFVVGFA----LLAA 444
                 44455554444444444444....3322 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5  16.7   1.8e-10   1.1e-06      16     402 ..      39     440 ..      26     454 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.8e-10
       MFS_2  16 latylliFytdvl....................glsaalvgl...vllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiillftppel 91 
                 ++++l +F+t v                     g++ a+ +    ++ ++ ++ +++ p+vG+++d++     + r  ll  a +++++ +  f+  + 
  KIR61953.1  39 ITVFLGPFLTTVTelaagcalgaercdgyvhplGIRVAAGSYypyLISLSVFLTVFVLPVVGAVADRSAH---KKR--LLGTAAFTGAGATIAFAFVT- 131
                 5555555555555555555555555555555556666666542115578888999*************99...556..68888888888777777777. PP

       MFS_2  92 sqsakfiwllvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgg...lkserkgylifaliialLmllgvi 187
                   +   ++  +++++  i++ +  + y s +p+l   +deR+ ++s  + + +lgg l  + + + v +l++   ++ + +  ++ ++   +  ++ ++
  KIR61953.1 132 --GERYLLGGALFLVANIAFGAAVVVYNSFLPQL-GGPDERDGISSRGWAIGYLGGGLLLAANLVAVTMLTEegnPQRTLDLARWSIVSAGVWWAAFTL 227
                 ..57888888999999******************.789*******************999999999999988444444444444444444444444444 PP

       MFS_2 188 ivvlgtkervemrkkekteqkeklslleqlkevfrnraflillllfllaalalg....vlnglllYyltyvlg..ngsaasvfllvvtisallgiplwq 280
                 +     +er  +  + + + +  +  ++ql++++r+ ++  l l+flla+l ++       +l+  y t  l+  + + ++++ll v  +a+ g++   
  KIR61953.1 228 VPLRWLRERPPA-AAPAGGGNVLTDGFRQLGRTLREVKAYPLTLFFLLAFLVYNdgiqTVITLASQYGTEELKlgQSTLITTILL-VQFLAFGGALALG 324
                 444444555443.344444444445556666666666666666666666665541111444555555555555313333333333.455677999**** PP

       MFS_2 281 plakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgl 379
                 +la+r+g  +t+ll+++l     + ++ l+++  l+f++l  ++g+ +g+++ l  s+++ ++ +g        eg++++++ + +k ++ +g +++gl
  KIR61953.1 325 ALARRIGAWKTVLLSLVLWTGVIIAAFRLPAEAPLPFMILGGCIGLVLGGSQALSRSLFSQLIPAGK-------EGEYYGFYEISDKGTSWLGPLAFGL 416
                 **************9999988888888899*********************************9998.......9999999999999999999999999 PP

       MFS_2 380 lLsaf.gyrakasvqspqvvlalr 402
                 + +++  yr + ++    +v +++
  KIR61953.1 417 VFQLTaSYRVGLVSLLIFFVVGFA 440
                 988877777666665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3347.14
//
Query:       KIR61954.1  [L=239]
Description: thymidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-22   79.4   0.0    3.3e-22   79.2   0.0    1.0  1  TK        Thymidine kinase
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.34   11.2   0.0    1.7  1  AAA_22    AAA domain


Domain annotation for each model (and alignments):
>> TK  Thymidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.0   3.7e-26   3.3e-22       2     177 .]      42     230 ..      41     230 .. 0.84

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 3.7e-26
          TK   2 sielilgpmfaGKsteLlrrvkryqlaekkvvvikaakdnRysegkvvthdgisleak.ksktssleeikeelee..edvdvvlvDEaqFfe.qdivel 96 
                  + +  gpm  GKst  l+  ++  ++  + +v  + +d   +  +v+t++g+   a   ++   l ++++ +      vd ++ DEa F++ + i+++
  KIR61954.1  42 ALRFFWGPMDCGKSTMALQMNHNHARQGRRGLVT-TRIDRSLG-PQVTTRIGLAHAAIeVTDGLDLRDLVRDAWAdgVRVDYLICDEASFYNlEHIEQM 138
                 68999******************99999988875.56776666.58********9999634444445544433330145788999************** PP

          TK  97 seklanegkivivagLdtdFerklFenilkllalaekvkklk..avCmkCgkkAsftkrln.....kekeviliG.....gkekYvsvCrkcy 177
                 ++ ++n ++ v + gL tdF+  lF    +l+ la++v +++    C  Cg++  +++r+      +e+e+++iG     ++ +Y+ +Cr++y
  KIR61954.1 139 ADLVDNDDVDVYAFGLATDFRSSLFPAARRLFELADSVARIQveVLC-WCGREGLLNARVIggrvvREGEQVVIGdtvdtADVRYQVLCRRHY 230
                 **************************************988632578.************999999*********544433458********9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.7e-05      0.34      11     129 ..      47     153 ..      39     162 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.7e-05
      AAA_22  11 tGesGtGKTtllrrlleqldeeakaeeerpevv..fvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrsee 107
                 +G+  +GK+t + ++ +++ ++      r+++v  +++ + +  + + +  l++a  +       +  +l++++++a+ +  ++  li DEa +  + e
  KIR61954.1  47 WGPMDCGKSTMALQMNHNHARQ-----GRRGLVttRIDRSLGP-QVTTRIGLAHAAIEV-----TDGLDLRDLVRDAWADGVRVDYLICDEASFY-NLE 133
                 6888889999998888887433.....3555553233333333.333334444444333.....3558899999999999988999*********.999 PP

      AAA_22 108 aleeLrsllnlsrkgvqliLvG 129
                 ++e+  +l++   ++v +  +G
  KIR61954.1 134 HIEQMADLVD--NDDVDVYAFG 153
                 9999999999..7777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1764.73
//
Query:       KIR61955.1  [L=152]
Description: hypothetical protein TK50_31475 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-05   24.2   0.0       0.06   13.6   0.0    2.1  2  DUF4878        Domain of unknown function (DUF4878)
     0.0059   16.8   0.5       0.01   16.0   0.5    1.4  1  Hva1_TUDOR     Hypervirulence associated proteins TUDOR domai
  ------ inclusion threshold ------
      0.019   15.3   0.0      0.028   14.8   0.0    1.3  1  DUF3828        Protein of unknown function (DUF3828)
      0.082   13.3   2.2       0.15   12.4   1.2    1.8  2  DUF4440        Domain of unknown function (DUF4440)
       0.15   12.0   0.0       0.42   10.6   0.0    1.7  2  FixH           FixH
       0.32   10.9   0.0       0.43   10.5   0.0    1.1  1  Endopep_inhib  IseA DL-endopeptidase inhibitor


Domain annotation for each model (and alignments):
>> DUF4878  Domain of unknown function (DUF4878)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00068         2      11      38 ..      55      82 ..      47      88 .. 0.87
   2 !   13.6   0.0     2e-05      0.06      70     112 .]     102     148 ..      98     148 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00068
     DUF4878 11 eavknFleavkeGdvedaikyltestre 38
                + +++Fl +v+ Gdve+a + l+ ++r+
  KIR61955.1 55 DGADGFLREVAAGDVERAYERLCAQSRS 82
                56899***************99999887 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2e-05
     DUF4878  70 veikde..eesgdtAvvtVkvt..lkdGkekkeeieliKedgkWkvs 112
                 +ei+d+  +  g++ + tV ++   + G+ +  +++++Kedg+W v+
  KIR61955.1 102 YEIVDVsvRTKGGRPTGTVRARltRDGGAGEDRTVTMVKEDGRWRVC 148
                 66665411566776666665551055677788889**********97 PP

>> Hva1_TUDOR  Hypervirulence associated proteins TUDOR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.5   3.5e-06      0.01       4      41 ..     107     145 ..     106     150 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.5e-06
  Hva1_TUDOR   4 VswkwggGestGkVeevltedteakg.vtvnaskddPry 41 
                 Vs ++ gG++tG+V+  lt d+ a + +tv   k+d r+
  KIR61955.1 107 VSVRTKGGRPTGTVRARLTRDGGAGEdRTVTMVKEDGRW 145
                 89999*************************999998776 PP

>> DUF3828  Protein of unknown function (DUF3828)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   9.5e-06     0.028      84     114 ..     117     147 ..      75     148 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.5e-06
     DUF3828  84 kavvdvslgqqeeeaveltVllkkengkWkI 114
                   +v+++l ++++   ++tV ++ke g+W++
  KIR61955.1 117 TGTVRARLTRDGGAGEDRTVTMVKEDGRWRV 147
                 568**************************97 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.8   2.4e+03      10      26 ..      62      79 ..      53      88 .. 0.78
   2 ?   12.4   1.2   5.1e-05      0.15      56     107 .]     101     147 ..      79     147 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.8
                HHHHCT-HH.HHHHCEEE CS
     DUF4440 10 eafvagdae.alaallap 26
                + ++agd+e a+++l+a+
  KIR61955.1 62 REVAAGDVErAYERLCAQ 79
                557888998777888775 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.1e-05
                 EEEEEEEEEEEETTEEEEEEEEEEEECCTTEEEEEEEEEEEEEEEETTEEEE CS
     DUF4440  56 slelteeevrvlgdlAvvtgrytfegrgdgepvegrgrftsvwrkegggWri 107
                  +e+ +++vr+   ++  tg+++++ ++dg+  e    +t +++ke+g+Wr+
  KIR61955.1 101 GYEIVDVSVRTK--GGRPTGTVRARLTRDGGAGE---DRTVTMVKEDGRWRV 147
                 345555555555..44445555555556665444...599**********96 PP

>> FixH  FixH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.87   2.6e+03     128     139 ..      39      50 ..      31      56 .. 0.73
   2 ?   10.6   0.0   0.00014      0.42      77     120 ..     105     147 ..      78     150 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.87
        FixH 128 GrWyvqlaaeeg 139
                 G W+vq+ a  g
  KIR61955.1  39 GAWNVQMLAGAG 50 
                 899999944433 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00014
        FixH  77 itlrdaagkpveaaaltlslshptdagkDkklkLteaangvYra 120
                 ++++ ++ +     +++++l +   ag+D++++++ +++g++r+
  KIR61955.1 105 VDVSVRTKGGRPTGTVRARLTRDGGAGEDRTVTMV-KEDGRWRV 147
                 44433445555699********************9.99999997 PP

>> Endopep_inhib  IseA DL-endopeptidase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00015      0.43     124     145 ..     125     147 ..     107     149 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00015
                    T.TS---EEEEEEEEESSSSEEE CS
  Endopep_inhib 124 l.deeesekekvtlvkedgkWkv 145
                      d++  e+++vt+vkedg+W+v
     KIR61955.1 125 TrDGGAGEDRTVTMVKEDGRWRV 147
                    2589999***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1148.32
//
Query:       KIR61956.1  [L=333]
Description: integrase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-29  100.6   0.0    1.1e-28  100.1   0.0    1.2  1  Phage_integrase  Phage integrase family
    3.1e-13   49.8   3.1    2.1e-10   40.8   0.2    3.5  4  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
    0.00011   22.6   0.0    0.00043   20.7   0.0    1.9  2  Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
    0.00051   20.2   0.0    0.00081   19.5   0.0    1.3  1  Integrase_1      Integrase


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.0   2.6e-32   1.1e-28       3     168 ..     137     311 ..     136     315 .. 0.94

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 2.6e-32
                      HHHHHHHHHHHCCGC...HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHH.....C CS
  Phage_integrase   3 ltedeverllaalee...slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellska.....l 88 
                      lt++ev++llaa++    ++++r++++++ll + GlR++El+sL+v dl  e+g+  v   +gKg+k r  +l+ + +  +  +l+++     +
       KIR61956.1 137 LTPQEVDALLAAAQAetgPTAARNRAAVALLADLGLRVGELVSLDVADLGAERGHRSV-RFVGKGGKPRRRALTPSTAYEVDAYLAERaaaqgV 229
                      89************99***************************************999.889************99999999999999776666 PP

                      HCCTTTSBSSBETTSSB--HHHHHHHHHHHHHHCT-S..SC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHC CS
  Phage_integrase  89 eeaeksellfaskrgkplsrqtvrkafkraveeagie..kpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYth 168
                        +e +  l++ + g +l r +v + ++r+++ agi   ++l+pH+lRh+fat    +gv+l+ vq+++GH++ +tt++Y +
       KIR61956.1 230 GVHEVTGPLLVTATGARLDRHSVFRLVRRLARVAGIPawEKLSPHSLRHAFATTARAEGVPLEDVQDAMGHADPRTTRRYDR 311
                      6667777899999*******************************************************************76 PP

>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.2   4.6e-14   2.1e-10       4      81 ..      26     109 ..      25     111 .. 0.93
   2 ?    0.0   0.1      0.24   1.1e+03      44      73 ..     137     164 ..     127     168 .. 0.78
   3 ?   -2.1   0.0       1.1   5.1e+03      45      60 ..     212     227 ..     195     236 .. 0.72
   4 !    6.5   0.0    0.0022        10      28      60 ..     254     288 ..     249     295 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 4.6e-14
                      HHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHH.TS--TTT--HHHHHHHHHS-----.......-----HHHHHHHHHHHHHHHH CS
  Phage_int_SAM_1   4 fleyLikerglspnTlraYrrdLrrflkflaergkesleqlttedvraflaeleeeg.......lsatslarrlsalrsFfqflv 81 
                      f e    +r+ls++T+ aYrrd+  +l + +  ++ + ++++  dv a+ +ele+         l+ +++ar+lsal s ++flv
       KIR61956.1  26 FTEAWLRNRRLSEHTRDAYRRDVAGWLAWCRA-RELDPLRANFLDVNAYGRELEATPaarsgrpLTPATVARKLSALSSWYDFLV 109
                      55666779************************.99**************9999998888999*********************98 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.24
                      --HHHHHHHHHS----------HHHHHHHH CS
  Phage_int_SAM_1  44 lttedvraflaeleeeglsatslarrlsal 73 
                      lt+++v a la+  +e  +  ++ar ++a+
       KIR61956.1 137 LTPQEVDALLAAAQAE--TGPTAARNRAAV 164
                      7889999999999996..677788877776 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.1
                      -HHHHHHHHHS----- CS
  Phage_int_SAM_1  45 ttedvraflaeleeeg 60 
                      t+ +v a+lae+++++
       KIR61956.1 212 TAYEVDAYLAERAAAQ 227
                      5556778888888765 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0022
                      HHHHHHHH..TS--TTT--HHHHH.HHHHS----- CS
  Phage_int_SAM_1  28 rflkflae.rgkesleqlttedvr.aflaeleeeg 60 
                      r+++ la  +g++++e+l+++++r af  + ++eg
       KIR61956.1 254 RLVRRLARvAGIPAWEKLSPHSLRhAFATTARAEG 288
                      455555555999***********868888887776 PP

>> Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   9.6e-08   0.00043       8      80 ..      30     110 ..      25     113 .. 0.86
   2 ?   -2.3   0.0       1.4   6.3e+03      41      58 ..     211     228 ..     203     234 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 9.6e-08
  Phage_int_SAM_4   8 alrlaglserTiksYlsaikrflrflkkk..apeeltkedieaYlnyLanerk......lsastqknalnalsffykkvle 80 
                      +lr ++lse T+++Y + ++  l++++ +   p   +  d++aY   L  ++       l+++t+ ++l+als+ y  +++
       KIR61956.1  30 WLRNRRLSEHTRDAYRRDVAGWLAWCRARelDPLRANFLDVNAYGRELEATPAarsgrpLTPATVARKLSALSSWYDFLVK 110
                      5799***********************884445555556*********988779999*******************98876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.4
  Phage_int_SAM_4  41 ltkedieaYlnyLanerk 58 
                      +t  ++ aYl+  a  + 
       KIR61956.1 211 STAYEVDAYLAERAAAQG 228
                      577789999999886665 PP

>> Integrase_1  Integrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.8e-07   0.00081      29     148 ..     156     282 ..     131     283 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.8e-07
  Integrase_1  29 kdkgvaavlqLarvlGLRseEAvql.akslktWkkaLergeerlrvvfGTKGgrpRevtilerealksavalaikvaeernG.kLidkpdlslipd.. 122
                  + ++ +a++ L + lGLR  E v l +++l       erg+ ++r v   KGg+pR  + +   a +  + la++ a++  G + +  p l ++++  
   KIR61956.1 156 TAARNRAAVALLADLGLRVGELVSLdVADL-----GAERGHRSVRFV--GKGGKPRRRALTPSTAYEVDAYLAERAAAQGVGvHEVTGPLLVTATGar 246
                  3456678999999********998853343.....347788877766..8*******99999666555555555555554443667777777777788 PP

  Integrase_1 123 .....ryreilrr...lgl..tgessphslRyayaq 148
                       ++r ++r    +g+    + sphslR+a+a 
   KIR61956.1 247 ldrhsVFRLVRRLarvAGIpaWEKLSPHSLRHAFAT 282
                  88888555444442233541145789********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2381.75
//
Query:       KIR61957.1  [L=141]
Description: antigen [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-16   58.6   0.0    6.2e-16   58.4   0.0    1.1  1  HSP20       Hsp20/alpha crystallin family
    1.8e-06   27.4   0.0    3.3e-06   26.6   0.0    1.5  1  ArsA_HSP20  HSP20-like domain found in ArsA


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   6.9e-20   6.2e-16       4     101 ..      34     129 ..      31     130 .. 0.92

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 6.9e-20
                 SSEEEEEEEEE-TT--CCCEEEEEETTEEEEEEE--...---TT----SS---EEEEEE--STTB-TTT-EEEEETTEEEEEEEBSS--..-------- CS
       HSP20   4 eeeeefevkldvpglkkeelkvkvednrvlvkgehe.eeeedekglikerssrkFsrkftLPenvdadkvkaslkdGvLtvtvpkkepekkkkerkiqi 101
                 ++ + f  ++d+pg++++ ++ +ve+n+++v+++++    ++ + +++er ++ Fsr++ L + +d+d+ +a ++ GvLt+ +p  e++   k+r+++i
  KIR61957.1  34 RDGDYFYAAFDLPGVDPDSIDCTVERNVLTVRAQRRrPTGDNVELVAAERPMGTFSRQLFLSDTLDTDRLEAGYDHGVLTLRIPVAERA---KPRRVAI 129
                 567788999***************************66667778999***************************************998...8899988 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   3.6e-10   3.3e-06       7      62 ..      42     115 ..      36     116 .. 0.95

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3.6e-10
  ArsA_HSP20   7 kldLPfvdkeeidlsrsgdeLtIkig...................nfrRqitLPsvlarkevtsAkfedgvLeIr 62 
                   dLP+vd+++id + + + Lt++++                    f+Rq  L ++l+ ++   A++  gvL+ r
  KIR61957.1  42 AFDLPGVDPDSIDCTVERNVLTVRAQrrrptgdnvelvaaerpmgTFSRQLFLSDTLDTDRL-EAGYDHGVLTLR 115
                 579**********************************************************9.*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       193  (0.0107647); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 980.65
//
Query:       KIR61958.1  [L=262]
Description: TfxG immunity protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-08   33.8  10.5    0.00013   22.0   3.5    2.2  2  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.9   5.3e-07    0.0094      37     117 ..      36     114 ..      15     124 .. 0.84
   2 !   22.0   3.5   7.1e-09   0.00013     170     228 ..     131     188 ..     115     207 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.3e-07
                 HHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS...HHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-S CS
         APH  37 irrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr...klsaaqlpellealgeflaalhqvdpaalplad 117
                 +++ +allr+L+  g+  +P++  +    +e+g   ++++++pg+++      +  a+++++l+++++ l++lh++ + + p+a+
  KIR61958.1  36 TSSVHALLRHLETVGFdGAPRARGF----DEHG--REVLSFLPGETVGVtrpWPAWAHSDDALRQVARWLRDLHAAVAGFVPPAG 114
                 5789************999999994....4444..57999999999999999778899*****************9777777765 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 7.1e-09
                 -SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCHHHCSCHCC.CHCHHHHHHHH CS
         APH 170 HgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavllrswtseld.peflaallray 228
                 H+D  p N  +   dgr++G++D+++a +  + +Dla+++ +w+       ++a+++ a 
  KIR61958.1 131 HNDAAPYNAAWA--DGRLVGFFDWDLAAPVTREWDLAFTAFAWVPLHArHVVAAEGFTAF 188
                 ************..9*************************77763222233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1955.21
//
Query:       KIR61959.1  [L=235]
Description: hypothetical protein TK50_31505 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-06   27.3   0.9       0.03   13.6   0.6    2.2  2  Hydrolase_4    Serine aminopeptidase, S33
    3.1e-05   24.7  11.8    4.4e-05   24.2  11.8    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
    0.00029   20.5   0.0        3.4    7.2   0.0    3.0  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.015   14.9   0.0    1.2  1  DLH            Dienelactone hydrolase family
      0.032   13.9   0.1      0.045   13.4   0.1    1.2  1  Abhydrolase_1  alpha/beta hydrolase fold
      0.085   11.5   0.0        5.5    5.6   0.0    2.6  2  AXE1           Acetyl xylan esterase (AXE1)


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.6     1e-05      0.03       3     105 ..      28     152 ..      26     154 .. 0.66
   2 !   13.1   0.0   1.4e-05     0.041     173     229 ..     152     208 ..     138     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1e-05
  Hydrolase_4   3 pkavvvlvHGlaehsg..ryaelaeaLaaqGfavyalDhrGhGrse............gkrghv.psfddyvdDlaafvekvk.eehpel.......p 77 
                  p+ ++++ HG ++h    ++ + a+++aa Gfa +a+D+  hG  +             +r++   +   +++D++++v +    e++         p
   KIR61959.1  28 PRPLILIGHGGGQHKTapAVVHRAHRFAASGFAAVAVDAPNHGDRPsddryqriateiRARADAgGDPAPLLADFQTLVAAQTvPEWRAVlhhldpgP 125
                  8999********99662267899********************9987777777777553333331234456666666653333133333344445566 PP

  Hydrolase_4  78 lfllGhSmGGliallyllrypdkvagli 105
                  +  +G S+G  + + +++ +p+ v++++
   KIR61959.1 126 VGYWGVSLGCGLGVPFVAAEPR-VRAAV 152
                  7777777777776666666666.66665 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.4e-05
  Hydrolase_4 173 llelldamkrleeraakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypg 229
                  +l+l  a + + e aa+it+P+ +l   +D+ v++++s +l+++ gs++ktl+  pg
   KIR61959.1 152 VLGLGGASAPAAEAAARITVPVEFLVQWDDERVPRAQSLALFDAFGSTEKTLHANPG 208
                  4566677788999***************************************98775 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2  11.8   1.5e-08   4.4e-05       2     131 ..      32     187 ..      31     234 .. 0.49

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.5e-08
                    EEE.--GC.....GC.HHHHHHHHCCTCEEEEE--TTSTS-GGCS...........................--HHHCHHH...HHHHCCTT..TT CS
  Abhydrolase_6   2 lll.HGagssassWl.vapLaallaagvhvlapDlpGhGrsdppp...........................ldledladl...aalldelaaggg 65 
                    +l+ HG+g ++++ + v + ++++a+g++ +a+D+p+hG + p++                            +l +++++   +a+l++l  ++g
     KIR61959.1  32 ILIgHGGGQHKTAPAvVHRAHRFAASGFAAVAVDAPNHG-DRPSDdryqriateiraradaggdpaplladfQTLVAAQTVpewRAVLHHL--DPG 124
                    5556****9988875344669999999999*********.555551333333333333333332333332222222222223336666666..699 PP

                    SEEEEEETCHHHHHHHHHHCC..EE..EEES-..----TTTS----TTHHHHHHTT-CCCCHCCH.S-H CS
  Abhydrolase_6  66 pvvlvGHSlGGalalaaaplalvvg..vlldppptalpagllaaalelllallallrllawlsre.plp 131
                    pv  +G SlG+ l+  ++++ ++v+  vl  + + ++pa+++aa+++++  +l      +w+ ++ p++
     KIR61959.1 125 PVGYWGVSLGCGLGVPFVAAEPRVRaaVLGLG-GASAPAAEAAARITVPVEFL-----VQWDDERvPRA 187
                    9999******8877775555544442233333.12333333222222222111.....23333332122 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0012       3.6      53      66 ..      54      67 ..      11     161 .. 0.51
   2 !    7.2   0.0    0.0011       3.4     220     268 ..     162     211 ..     157     212 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0012
                   HHHTT-EEEEEE-T CS
  Peptidase_S15 53 fvarGYavVvqdvr 66
                   f+a+G+a V +d+ 
     KIR61959.1 54 FAASGFAAVAVDAP 67
                   56666666655542 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0011
                    HHHHHCT--S-EEEEEECCSSTTC.CHHHHHHHHHCCTT-EEEEECECTT CS
  Peptidase_S15 220 lsedadkvkapvllvgGwnDwnvk.ngaiklyealkapgvklilgpwtHv 268
                    + e+a+++++pv ++  w D+ v   ++++l++a  ++++ l+ +p++H+
     KIR61959.1 162 AAEAAARITVPVEFLVQWDDERVPrAQSLALFDAFGSTEKTLHANPGRHG 211
                    457789*****************99*************99*********7 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0     5e-06     0.015      33     170 ..      51     196 ..      15     206 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5e-06
         DLH  33 serlaeeGYvalaPdlYarqa..ldpndeaeaaraldelvskvaeekvlddl.....kaav.aylksvpevstkkvgvvGfCmGGalalllaaevpevd 123
                 ++r+a  G++a+a d    +    d  +++ a+++    ++  + + +l+d+      ++v ++ +   + +++ vg  G  +G  l + + a +p+v 
  KIR61959.1  51 AHRFAASGFAAVAVDAPNHGDrpSDDRYQRIATEIRARADAGGDPAPLLADFqtlvaAQTVpEWRAVLHHLDPGPVGYWGVSLGCGLGVPFVAAEPRVR 149
                 578999999999988877666333444444555555566666677788888833333222212333445578999****************99999*** PP

         DLH 124 aavafYGlspekeleeaakikapilalfgeeDefipadevekleeal 170
                 aav   G    +  e+aa+i +p+ +l+   De +p ++   l  a+
  KIR61959.1 150 AAVLGLGGASAPAAEAAARITVPVEFLVQWDDERVPRAQSLALFDAF 196
                 *******899999999*******************999866666555 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.5e-05     0.045       2     103 ..      31     153 ..      30     173 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.5e-05
                    EEEEE-STTTCGGGGTTGHHHHHHHHT..TSEEEEEEETTSTTSSSTTTGB......................CHHSHHHHHHHHH...HHHHHCT CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd..gfdvillDlrGvgySspapacin.....................ddygtasvaddld...rildalg 71 
                    +++i hG++     +a   + +a  ++  gf  +++D +++g    +++ +                       d++t   a  +    ++l +l+
     KIR61959.1  31 LILIGHGGGQHKTAPAV--VHRAHRFAasGFAAVAVDAPNHGDR--PSDDRYqriateiraradaggdpapllADFQTLVAAQTVPewrAVLHHLD 122
                    56777777775555555..4444444466888888888888754..444333347777777777777777777888999676666688566***** PP

                    TSSEEEEEETHHHHHHHHHHHHHGGGEEEEEE CS
  Abhydrolase_1  72 ddkltlvGhSmGGmialayaaeyperVkalvl 103
                     +++ ++G S+G+ ++  + a  p rV+a vl
     KIR61959.1 123 PGPVGYWGVSLGCGLGVPFVAAEP-RVRAAVL 153
                    *****************9999755.5888887 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.012        36     165     200 ..     115     150 ..      13     155 .. 0.47
   2 ?    5.6   0.0    0.0018       5.5     254     316 ..     165     228 ..     162     229 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.012
                 HHTSTTEEEEEEEEEEETHHHHHHHHHHHH-SS-SE CS
        AXE1 165 vaslpevDeeRvavlGasqGGalalavaalekrika 200
                  a l++ D+  v+  G s G +l +   a e+r++a
  KIR61959.1 115 RAVLHHLDPGPVGYWGVSLGCGLGVPFVAAEPRVRA 150
                 333455566666666666666666666666666665 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0018
                 HHCC--S-EEEEEETT-SSS-HHHHHHHHHH-.-SSEEEEEETT-STTTTHHHHHHHHHHHHHH CS
        AXE1 254 lAkrvkaevllsvgLeDevcpPstvfaaynkl.etekeikvyeefahealkafqedkklkflsk 316
                  A+r+ ++v + v  +De  p +   a+++++ +tek+++  +  + + l++++ d++++f ++
  KIR61959.1 165 AAARITVPVEFLVQWDDERVPRAQSLALFDAFgSTEKTLHANPGRHGDRLPEHELDSAVRFFTR 228
                 699****************************93467****999999999999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 1831.76
//
Query:       KIR61960.1  [L=119]
Description: hypothetical protein TK50_31515 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 919.57
//
Query:       KIR61961.1  [L=244]
Description: hypothetical protein TK50_31520 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1881.67
//
Query:       KIR61962.1  [L=111]
Description: MarR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-19   69.3   0.1    2.7e-19   69.1   0.1    1.1  1  HTH_34    Winged helix DNA-binding domain
      9e-05   22.5   1.4    9.5e-05   22.4   0.2    1.6  2  HTH_20    Helix-turn-helix domain
    0.00017   21.4   0.1    0.00033   20.4   0.1    1.4  1  HTH_5     Bacterial regulatory protein, arsR family
     0.0006   19.7   0.1     0.0011   18.8   0.1    1.5  1  MarR_2    MarR family
    0.00097   19.1   0.1     0.0018   18.2   0.1    1.4  1  Cdc6_C    CDC6, C terminal winged helix domain
     0.0011   18.8   0.1     0.0015   18.4   0.1    1.3  1  PadR      Transcriptional regulator PadR-like family
     0.0072   16.2   0.0      0.013   15.4   0.0    1.4  1  MarR      MarR family
  ------ inclusion threshold ------
      0.029   14.5   0.2      0.086   13.0   0.0    1.9  2  DprA_WH   DprA winged helix domain
       0.05   14.0   0.1      0.089   13.2   0.1    1.4  1  Rrf2      Transcriptional regulator
      0.057   13.9   0.1      0.086   13.4   0.1    1.3  1  HTH_27    Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.1   1.5e-22   2.7e-19       2      80 .]      26     104 ..      25     104 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 1.5e-22
      HTH_34   2 RlavlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGreafkkyvkaLksll 80 
                 Rl++l++  ++ +++f +l++ le+t+gnLs+hl++Le+ag ie++k+++g++ rt++++T +G +a +++++ Lk+l+
  KIR61962.1  26 RLGILTIAHEAHRVEFGYLRTHLELTAGNLSKHLSVLETAGLIEIQKGYEGRRGRTWITLTAAGATALADEIARLKQLI 104
                 99**************************************************************************997 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.2   5.3e-08   9.5e-05       9      57 ..      22      71 ..      17      74 .. 0.87
   2 ?   -2.7   0.1       3.5   6.2e+03      25      30 ..      92      97 ..      85     101 .. 0.50

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 5.3e-08
                -.HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20  9 h.PvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevv 57
                h + R++il   ++a  + ++ l   l+l+  +ls+HL vLe agL+e +
  KIR61962.1 22 HqRARLGILTIAHEAHRVEFGYLRTHLELTAGNLSKHLSVLETAGLIEIQ 71
                44788888888888899999999999*********************976 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.5
                B-HHHH CS
      HTH_20 25 ltasel 30
                + a e+
  KIR61962.1 92 ALADEI 97
                333444 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.9e-07   0.00033      23      46 ..      46      69 ..      41      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.9e-07
                HHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5 23 eelglsqstvShHLkkLreaGLVe 46
                 +l+l+ +++S HL++L+ aGL+e
  KIR61962.1 46 THLELTAGNLSKHLSVLETAGLIE 69
                69********************96 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   6.1e-07    0.0011      14      62 .]      32      79 ..      18      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 6.1e-07
                HHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2 14 LgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                ++++   ++  g l  +l l+ +++s++l  L+ aGL+e ++g e +R+
  KIR61962.1 32 IAHEAH-RVEFGYLRTHLELTAGNLSKHLSVLETAGLIEIQKGYEGRRG 79
                555555.488999*****************************9999996 PP

>> Cdc6_C  CDC6, C terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1     1e-06    0.0018      37      69 ..      50      81 ..      45      85 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1e-06
                --HHHHHHHHHHHHHTTSEEEEEEE-CC.C-EE CS
      Cdc6_C 37 ltqrevsdllseLemlgileleksskGrregrt 69
                lt    s++ls Le+ g++e++k+ +Grr grt
  KIR61962.1 50 LTAGNLSKHLSVLETAGLIEIQKGYEGRR-GRT 81
                6778899*********************7.987 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   8.6e-07    0.0015      25      74 ..      46      94 ..      32      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.6e-07
                T-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHH CS
        PadR 25 gllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrela 74
                 +lel +G+l + L+ Le  gl+e ++  +  ++ r + +lT+aG ++la
  KIR61962.1 46 THLELTAGNLSKHLSVLETAGLIEIQKGYE-GRRGRTWITLTAAGATALA 94
                4578999*********************96.8999***********9987 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.3e-06     0.013       7      51 ..      28      72 ..      24      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.3e-06
                HHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR  7 viLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRsk 51
                 iL+i +e        L  +l+++ +++++ l  Le +Glie +k
  KIR61962.1 28 GILTIAHEAHRVEFGYLRTHLELTAGNLSKHLSVLETAGLIEIQK 72
                589999999999999**************************9776 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.8e-05     0.086      34      60 ..      47      73 ..      33      74 .. 0.89
   2 ?   -1.9   0.0       2.1   3.7e+03      29      33 ..      95      99 ..      87     108 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.8e-05
     DprA_WH 34 rtglpaaevsaaLleLELaGlverlpG 60
                ++ l+a+ +s +L+ LE aGl+e + G
  KIR61962.1 47 HLELTAGNLSKHLSVLETAGLIEIQKG 73
                6889******************98776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.1
     DprA_WH 29 DqLvr 33
                D+++r
  KIR61962.1 95 DEIAR 99
                33333 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     5e-05     0.089      22      63 ..      35      76 ..      23      80 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5e-05
                TCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-T CS
        Rrf2 22 eeepvsseeiaerqnispsylekilakLrkaglvksvrGkgG 63
                e + v+   + ++ ++ +  l+k l+ L+ agl++ ++G +G
  KIR61962.1 35 EAHRVEFGYLRTHLELTAGNLSKHLSVLETAGLIEIQKGYEG 76
                33347888888999999999*******************988 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   4.8e-05     0.086      11      68 .]      31      89 ..      21      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.8e-05
      HTH_27 11 lirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrre.krvrlTdkG 68
                +i+h+ +r++   l+  l +++ + s+ l+ L+ +GL+e ++  + rr  + ++lT++G
  KIR61962.1 31 TIAHEAHRVEFGYLRTHLELTAGNLSKHLSVLETAGLIEIQKGYEGRRGrTWITLTAAG 89
                67788899999999999*********************777776666666889999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 876.33
//
Query:       KIR61963.1  [L=227]
Description: hypothetical protein TK50_31530 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1798.37
//
Query:       KIR61964.1  [L=191]
Description: hypothetical protein TK50_31535 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-07   32.2  11.4    1.5e-07   32.2  11.4    1.9  2  MDMPI_N   Mycothiol maleylpyruvate isomerase N-terminal domai
    1.9e-05   25.2   0.5    1.9e-05   25.2   0.5    1.6  2  DinB_2    DinB superfamily


Domain annotation for each model (and alignments):
>> MDMPI_N  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2  11.4   1.7e-11   1.5e-07       2     140 ..      10     131 ..       9     132 .. 0.93
   2 ?   -0.6   0.5      0.21   1.9e+03      97     109 ..     146     158 ..     134     186 .. 0.51

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 1.7e-11
     MDMPI_N   2 reewaalaalvagLtdeqwaapspcpGWtvadlvaHlarsaralaaalaaegaesalardaaaalvtaadaeavdlaaslapeallaafraavtrlaaa 100
                 r++  ++ ++++  td++w+ p    +W+    +aH+a   +a a+ la+++a+       ++         + +  ++++p+++l  ++a  + la+a
  KIR61964.1  10 RAAIGEMGRVLGPHTDADWTVPAGTLEWSCWTTAAHVAHDLLAYAGQLAGRPAD-------GYL------PFDLRVSPTATPAQVLTVVAACGDLLATA 95 
                 778889999****************************************97666.......344......7889************************* PP

     MDMPI_N 101 laalppdaiadrlgipggprslgeflrtrlvEavvHglDl 140
                 ++a++p+ +a+ +    gp +++ f+++ + E+ +H+ D+
  KIR61964.1  96 VDAADPGVRAWHF----GPCDPAGFAAMGVAETLLHTHDI 131
                 *************....9999999***************8 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.21
     MDMPI_N  97 laaalaalppdai 109
                 +aa l +l pda+
  KIR61964.1 146 AAAVLTRLFPDAP 158
                 3333333333222 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.5   2.1e-09   1.9e-05      12     126 ..      19     129 ..       9     131 .. 0.89
   2 ?   -1.9   0.1       0.5   4.4e+03      60      72 ..     154     166 ..     136     182 .. 0.64

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 2.1e-09
      DinB_2  12 lledlteeelnrqpspgkwsiawllaHlgnveelllerlrgeeaprpgldpltppsaaealaylaevrarllallealtdadldrpltaphpglgkltl 110
                 +l + t+++++ +  +++ws++ + aH++     ++  l g++a+   l+ +   s+  + a+   v+a++ +ll+++ d  +++p+  +  ++g+ + 
  KIR61964.1  19 VLGPHTDADWTVPAGTLEWSCWTTAAHVAHDLLAYAGQLAGRPAD-GYLPFDLRVSPTATPAQVLTVVAACGDLLATAVD--AADPGVRA-WHFGPCDP 113
                 67789************************************6665.788888999**********************655..78888888.79****** PP

      DinB_2 111 gdvllfvlqHeqhHle 126
                 +  +++ ++++  H +
  KIR61964.1 114 AGFAAMGVAETLLHTH 129
                 ***********99986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.5
      DinB_2  60 ldpltppsaaeal 72 
                 +++++p+++ae+l
  KIR61964.1 154 FPDAPPGPPAEVL 166
                 3444445555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1309.95
//
Query:       KIR61965.1  [L=167]
Description: NUDIX hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-16   58.4   0.3    9.2e-16   58.1   0.3    1.1  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.3   5.1e-20   9.2e-16       2     118 ..       5     135 ..       4     145 .. 0.71

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 5.1e-20
                 EEEEEEEEEEETTSEEEEEEES.......SSSTTT...EESSEEECBTTSHHHHHHHHHHHHHHSEEE.EEEEEEEEEEEEEEEEEEEEE...EEEEEE CS
       NUDIX   2 lrravgvvllnekgevLlvrrs.......kkpfpg...WelPgGkvepgEtpeeAArREleEEtGlea.ellellgrlhylapydgpygd...eheily 86 
                 lr++v +++l+e++++Ll r         ++   +   W+ PgG+vepgE+  +A+rREl+EEtGl    +   +++ + +a + +p  d   ++++l+
  KIR61965.1   5 LRPSVRAIVLDENDRILLCRFDfphpvvpEQ---SkavWAAPGGGVEPGEDRLTALRRELREETGLAIvAEPPHVWHQEVVAADVAPGFDgviNDYFLV 100
                 689****************833465554444...2556************888************6333444444445555555555555444444444 PP

                 EEE.EEECSGCSST..STTTEEEEEEEEHHHHHHH CS
       NUDIX  87 vfl.eevegelepn..denevsevrwvpleellke 118
                      ++ gel+ +  + + ++++rw+ l e++++
  KIR61965.1 101 RTNhFQPRGELTDDqlAAENLAAFRWWQLSEIAAH 135
                 444777777777778777779999*******9433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1228.08
//
Query:       KIR61966.1  [L=388]
Description: erythromycin esterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-55  189.3   0.7    1.9e-55  189.0   0.7    1.1  1  Erythro_esteras  Erythromycin esterase
  ------ inclusion threshold ------
      0.044   14.2   0.2       0.15   12.5   0.2    1.9  1  Phage_TAC_6      Phage tail assembly chaperone protein, TAC


Domain annotation for each model (and alignments):
>> Erythro_esteras  Erythromycin esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.0   0.7   2.2e-59   1.9e-55       1     343 [.      53     380 ..      53     381 .. 0.87

  Alignments for each domain:
  == domain 1  score: 189.0 bits;  conditional E-value: 2.2e-59
                      HHHC---EEEEEEEHHHHHHHHHHHHHS-S-GGGT.....S-CCC-CHHHHHHHHHHHHHHHSTT-SS--EEEEEE-S.--.....-HHHHHHH CS
  Erythro_esteras   1 veehGfrtvalEadwpdalrvdryvrggtgdaeea..krfptwmWrneevlelveWlReyNagrpkkervrfyGlDlq.sl.....resldavl 86 
                      ve++G+r +a+E+d+  +l vd+++ +g+gd  ++  ++f+ ++ +++++++lv+W+R+yN+  +++e++rf+G+D + ++     r++l+a++
       KIR61966.1  53 VEHEGYRSFAIESDCLMGLVVDDHIATGAGDLDDVmaRGFSHGFGASAANRDLVRWMRTYNE--AHDEKLRFFGIDGPlEYwaaspRQALTALH 144
                      8****************************9999999989**********************7..78889*********7777777777777777 PP

                      HHHHHCH.......CCCCHHHHHHHCCHGGCS..........TSSCCCCCHHHHHHHHHHHHCCHGGG.....GGTSHHHHHHHHHHHHHHHHH CS
  Erythro_esteras  87 dyLakvd.......pelagaareryaclapladp..raar..saeaaelrscedevvallkellakreeyaaedgeaeeffsaeqnarlvknae 169
                        L+          ++l+g ++++ +++  + dp        sa+a++lr  +d++ all+  l + +         +++++ae++ r++++++
       KIR61966.1 145 GLLDGPLpctretlDALLGPDERWSNEATVM-DPsqS--IgrSADAQRLRVIADDLLALLDTQLPQLS--------VRDRERAELYGRTAVGLL 227
                      7777764455666677777777777777666.34432..14588999**************9444443........57789************* PP

                      HHC....CSSSSSCHHHHHHHHHHHHHHHHHHHH..HHSSEEEEEEHHHHS..SS-STTTT-S...S-HHHHHHHHHGGGEEEEEEEEEEEEEE CS
  Erythro_esteras 170 ryyra..gdeeswnlrllalRDrhMaenlealleheargkivvwAHNsHig..daratdmgkerg.lnaGqllrerlgdeyvaiGftfgtgtva 258
                      ry++a  + + ++ +rl +lRD++Ma nl+a+++   +g+++v+AHN H++   +r+  ++++ + ++aG++ ++rlgd+y++++ +fg     
       KIR61966.1 228 RYHHAmaDGTADRISRLSGLRDAMMAANLRAVAA---HGPALVFAHNLHLQrhPSRMSLGDQDVRmWSAGAITAARLGDRYAFLASAFGAI--- 315
                      *******99999**********************...679***********777777777766447*************************... PP

                      EC-.......EEEE----TTSHHHHHHCSS-SEEEEEG-.CHHHHHHEE...........EEE---SB-BTTS..HHHH-SEEEEEEE CS
  Erythro_esteras 259 aasewgepmevmtvrppppgslEallhaagppdflldlrneelrewleeprleraiGv.rpeterqshyveas..laeqfDalifvde 343
                                  + ++p++++ E++l++  + + ++d r           rl+ra  +  p+ +r+ +y++ +   ++  D+++fv+e
       KIR61966.1 316 ------------GGDAPAADTTEGILATLPWHACVVDGR-----------RLARAAAAaAPRVSRDFAYFPLDptQLDTIDGIVFVRE 380
                      ............668999*******************98...........88888877899999999****9966789********97 PP

>> Phage_TAC_6  Phage tail assembly chaperone protein, TAC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   1.7e-05      0.15      18      52 ..     128     162 ..     127     166 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.7e-05
  Phage_TAC_6  18 PeeFWalTPaELalllgaeaagaapLsRadLdaLm 52 
                  P e+Wa++P+    +l+    g  p +R+ LdaL+
   KIR61966.1 128 PLEYWAASPRQALTALHGLLDGPLPCTRETLDALL 162
                  889*******8666666566666699*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2715.11
//
Query:       KIR61967.1  [L=161]
Description: molecular chaperone DnaJ [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-18   65.1   0.1    7.6e-18   64.4   0.1    1.3  1  DUF1992        Domain of unknown function (DUF1992)
  ------ inclusion threshold ------
       0.21   11.3   1.0       0.32   10.7   1.0    1.3  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> DUF1992  Domain of unknown function (DUF1992)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.1   8.4e-22   7.6e-18       2      69 ..       9      77 ..       8      78 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 8.4e-22
     DUF1992  2 aEerIreAierGeFdnlpgrGKPLpldd.endplvpeeerlanrilknagvlPpeielrkeieelkell 69
                aE++Ir A+erGeFdnlpg+GKPLp +  ++d+ ++ + +l ++ l    +lP  + lr+ ie+  +++
  KIR61967.1  9 AEAQIRTAQERGEFDNLPGAGKPLPGRGtPYDESWWIKSFLEREKLPSDLLLPTPLLLRRRIERVPDEV 77
                8*************************556**********************************998876 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.0   3.5e-05      0.32       1      24 [.     107     130 ..     107     139 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.5e-05
                    EEEEEEESSHHHHHHHHHHHHHCT CS
  FAD_binding_4   1 paavvrpeseeevaaalrlaneag 24 
                    p++vvrp++++ev+a +r+a+e+ 
     KIR61967.1 107 PQVVVRPANADEVVAGWRAARERA 130
                    89*******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 1055.54
//
Query:       KIR61968.1  [L=111]
Description: anti-sigma factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-15   55.7   0.0    4.4e-15   55.4   0.0    1.1  1  Cupin_7   ChrR Cupin-like domain
    0.00034   19.8   0.0    0.00039   19.6   0.0    1.2  1  DUF4437   Domain of unknown function (DUF4437)
    0.00057   19.5   0.4     0.0015   18.2   0.4    1.7  1  Cupin_2   Cupin domain


Domain annotation for each model (and alignments):
>> Cupin_7  ChrR Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   7.3e-19   4.4e-15       7      87 ..      25     105 ..      21     108 .. 0.87

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 7.3e-19
                 STTEEEEEEEEESSSS-EEEEEEEE-TTEE---EE.-.TT-EEEEEEEEEEEETTEEEETTEEEEE-TT-EE--EESS-EEEE CS
     Cupin_7   7 aegvevkpLerdgeekaratslvryapgsafsahk.H.pggeeilVLeGvfsdeegdypaGsylrnppgsshapvseeGctif 87 
                  +g+  +pL r  +  + + ++++++pgs++++++ H pg ee++VL+G+f+d ++dypaG++l +p gs h p + +Gc +f
  KIR61968.1  25 FPGIRLRPLWRGPH--GAQAAVLEMDPGSSWPRRDvHtPGPEEVYVLDGTFHDGARDYPAGTFLHAPAGSWHVPATVTGCRLF 105
                 57888888887664..588999*********9875362577***************************************998 PP

>> DUF4437  Domain of unknown function (DUF4437)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   6.6e-08   0.00039      59      96 ..      65      97 ..      18     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6.6e-08
                EEEEEESEEEETTEE.....E-TTEEEEE-TT-EEEET CS
     DUF4437 59 rgvVikGalhnddekaekmWlpkgsywtqPaGevhita 96
                +++V++G+ h + ++      p+g++ ++PaG++h+ a
  KIR61968.1 65 EVYVLDGTFHDGARD-----YPAGTFLHAPAGSWHVPA 97
                789************.....***************976 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.4   2.5e-07    0.0015       2      59 ..      44      98 ..      43     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.5e-07
                EEEEETTE.EEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE CS
     Cupin_2  2 lvelppGe.sapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrN 59
                + e++pG     + +H+   e +yVl+G+++    +   ++ aG +++ pag +H  + 
  KIR61968.1 44 VLEMDPGSsWPRRDVHTPGPEEVYVLDGTFH----DGARDYPAGTFLHAPAGSWHVPAT 98
                57899***555588896666********876....445899**************7755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       165  (0.00920297); expected 358.6 (0.02)
Passed bias filter:                      148  (0.00825478); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 847.56
//
Query:       KIR61969.1  [L=313]
Description: AraC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-23   80.5   2.1    1.4e-22   79.7   2.1    1.4  1  HTH_18         Helix-turn-helix domain
    5.5e-16   58.2   0.0    1.1e-07   31.8   0.0    2.3  2  HTH_AraC       Bacterial regulatory helix-turn-helix proteins
    9.6e-16   58.0   0.0    1.3e-15   57.6   0.0    1.2  1  DJ-1_PfpI      DJ-1/PfpI family
  ------ inclusion threshold ------
      0.021   14.5   0.0      0.031   13.9   0.0    1.2  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
      0.028   14.2   0.2        1.1    9.1   0.0    2.8  2  HTH_23         Homeodomain-like domain
      0.032   13.6   0.2       0.12   11.8   0.0    2.1  2  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
      0.083   12.7   0.1       0.55   10.1   0.0    2.4  2  TetR_N         Bacterial regulatory proteins, tetR family
       0.35   10.7   8.4        1.8    8.5   0.1    3.4  4  HTH_AsnC-type  AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   2.1   6.4e-26   1.4e-22       1      80 [.     228     306 ..     228     307 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 6.4e-26
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 laa+l+vs+rtL r+f ++lg++p ++l  +R+ rAr lL e+t+l+v ++A ++G  ++++++r fr + g+tP++yrr
  KIR61969.1 228 LAAHLHVSPRTLARRFAEQLGTSPGAWLLSRRVARARTLL-EETDLPVEAVAVRVGLTSAANLRRRFRVRVGTTPGAYRR 306
                 89************************************88.78************************************9 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   4.7e-11   1.1e-07       7      41 ..     221     255 ..     216     256 .. 0.93
   2 !   24.4   0.0     1e-08   2.3e-05       6      42 .]     269     306 ..     267     306 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 4.7e-11
                 CT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   7 tnltiediAdelgfSrsyFsrlFkketGmtPsqyr 41 
                 t l+++d+A++l++S++++ r+F +++G +P +++
  KIR61969.1 221 TALSVGDLAAHLHVSPRTLARRFAEQLGTSPGAWL 255
                 779******************************98 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 1e-08
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                  t+l +e +A  +g+ S  +++r+F+ ++G tP +yr+
  KIR61969.1 269 ETDLPVEAVAVRVGLtSAANLRRRFRVRVGTTPGAYRR 306
                 6899********************************96 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   5.8e-19   1.3e-15      37     163 ..      44     169 ..       3     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 5.8e-19
                 TSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EEEEETTTHHHHHHTTTTTTSEE--SGGGHHHH..HHTTS CS
   DJ-1_PfpI  37 keevkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaekgklvaaICagpqlLaaagvlkgrrvTsypavkdkl..ekaga 133
                  ++v +s G+ ++v + l+  + ++ D++v+pG    p +   +++v+  + +++ +g ++++IC g + La++g+l+gr++T+++a  ++l  e +  
  KIR61969.1  44 PGQVPTSAGYALSVSRDLS--ALDSADTVVIPGWA--PVEAPLSARVRGALLRAHARGARLVTICGGVFALARTGLLDGRSATTHWARAEQLrqEFPRV 138
                 7899999**9999999999..67788******985..5777777899999999999999*********************************4333444 PP

                 EE-SS.SEEEETTEEEESSGGGHHHHHHHHH CS
   DJ-1_PfpI 134 kyvdk.rvvvdgnlvTsrgpgaaiefalell 163
                 +++++  +v  g++ Ts+g+ga i+++l l+
  KIR61969.1 139 RVEADvLYVDHGDVATSAGAGAGIDLCLHLV 169
                 44444799999****************9987 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.4e-05     0.031      34      91 ..      61     113 ..      49     128 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
    GATase_3  34 deslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGee 91 
                  ++l++ ad v++pG  ++++ l +     ++ a+ +a+++g++++ iCGG   L ++
  KIR61969.1  61 LSALDS-ADTVVIPGWAPVEAPLSAR----VRGALLRAHARGARLVTICGGVFALART 113
                 456755.9**********99988765....55899999999**********9999875 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.097   2.2e+02       2      24 ..      82     104 ..      81     105 .. 0.90
   2 ?    9.1   0.0   0.00049       1.1      19      36 ..     224     241 ..     213     251 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.097
      HTH_23   2 asereRlrillllaeGlsvreIA 24 
                 +s+r R   l+++a+G++  +I+
  KIR61969.1  82 LSARVRGALLRAHARGARLVTIC 104
                 68999************999987 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00049
      HTH_23  19 svreIAreLgvsrrTvyr 36 
                 sv + A++L+vs+rT+ r
  KIR61969.1 224 SVGDLAAHLHVSPRTLAR 241
                 77789***********96 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.3e-05      0.12      18      49 ..     213     244 ..     211     249 .. 0.88
   2 ?   -2.4   0.0       1.4   3.2e+03      22      39 ..     265     283 ..     261     284 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.3e-05
  HTH_Tnp_ISL3  18 ayilelllesrsvkavArqlgvSwtTVwrild 49 
                   +++ ++l    sv + A++l+vS++T+ r++ 
    KIR61969.1 213 EWAEARLGTALSVGDLAAHLHVSPRTLARRFA 244
                   67888888888999***************995 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
  HTH_Tnp_ISL3  22 ellles.rsvkavArqlgv 39 
                   +ll e+  +v avA ++g+
    KIR61969.1 265 TLLEETdLPVEAVAVRVGL 283
                   5677778899999977776 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00024      0.55      16      38 ..     222     244 ..     220     252 .. 0.95
   2 ?   -1.6   0.0       1.1   2.4e+03      18      32 ..     273     287 ..     263     290 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00024
                 T--HHHHHHHHTSSHHHHHHHTS CS
      TetR_N  16 attvreIAkrAGvskgalYryFp 38 
                 a++v ++A++++vs+++l r+F+
  KIR61969.1 222 ALSVGDLAAHLHVSPRTLARRFA 244
                 799******************96 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
                 -HHHHHHHHTSSHHH CS
      TetR_N  18 tvreIAkrAGvskga 32 
                  v+++A r+G++ +a
  KIR61969.1 273 PVEAVAVRVGLTSAA 287
                 589999999998775 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       2.2     5e+03      30      42 .]     120     132 ..     118     132 .. 0.84
   2 ?    8.5   0.1   0.00078       1.8      18      38 ..     223     243 ..     220     245 .. 0.90
   3 ?   -1.0   0.0       0.7   1.6e+03      24      33 ..     244     253 ..     242     262 .. 0.79
   4 ?    5.9   0.5    0.0052        12      12      37 ..     266     291 ..     264     294 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.2
  HTH_AsnC-type  30 SestvlrRvrrLe 42 
                    S++t ++R ++L+
     KIR61969.1 120 SATTHWARAEQLR 132
                    8999999999886 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00078
  HTH_AsnC-type  18 isyaeLAervGlSestvlrRv 38 
                    +s+ +LA+ +++S+ t +rR 
     KIR61969.1 223 LSVGDLAAHLHVSPRTLARRF 243
                    58889***************6 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.7
  HTH_AsnC-type  24 AervGlSest 33 
                    Ae++G S+ +
     KIR61969.1 244 AEQLGTSPGA 253
                    8999999986 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0052
  HTH_AsnC-type  12 LqedaRisyaeLAervGlSestvlrR 37 
                    L e   ++++++A rvGl+ ++ lrR
     KIR61969.1 266 LLEETDLPVEAVAVRVGLTSAANLRR 291
                    56677899***********9999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2386.01
//
Query:       KIR61970.1  [L=191]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-22   78.7   0.2    7.8e-22   78.4   0.2    1.1  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
    8.2e-08   32.5   0.0    1.1e-07   32.1   0.0    1.2  1  Acetyltransf_1  Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
      0.021   14.5   1.6      0.036   13.8   0.0    2.0  2  Acetyltransf_8  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.2   1.3e-25   7.8e-22       2     137 ..      16     159 ..      15     160 .. 0.89

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 1.3e-25
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmrylpe.pltleeaeewlera...waeeseeegygwaivl..kdtg.v.iGsvglrdleeedeeaelgymla 88 
                     L Lrp+ + D+++l e++ dp +++++++   +  +a++w+ r+   wa+   ++ + +a+++  +d+g   + +v l d+ +++  ae+gy+ a
      KIR61970.1  16 LELRPWHDGDIPELIEVYRDPVLRHWTRHpVDDARDAHRWMVRSrqgWAA---GRRFAFAVREprRDGGdRlVATVVLKDVLPSRPHAEIGYWTA 107
                     89************************88867888999****988666665...699*****99975555755************999******** PP

  Acetyltransf_3  89 psfwgkGyateavralleyafeel...glerlvavidkeNeaSirvleklGf 137
                       ++g+G+a  av+a++++af++    gl+rl   ++ +N+aS rv+ek+G+
      KIR61970.1 108 AWARGRGVAPRAVQAVTDWAFTRFaatGLTRLDLLHQVDNTASCRVAEKAGY 159
                     ********************7555555***********************96 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   1.9e-11   1.1e-07       7     117 .]      32     159 ..      26     159 .. 0.72

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1.9e-11
                     HHHHHTHHHHHHHHHHH...........HHHHHHSTTCEEEE.EEET......TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHH CS
  Acetyltransf_1   7 llvesffppnedaseee...........feesfsleaegllv.aeed......geliGfisllkipdekggvayieslaVspeyrgkGlGsaLle 83 
                      ++++   ++ + ++++           ++ +    a++ ++ a ++      ++l++++ l+ + + ++++a+i +++ +  +rg+G++ + ++
      KIR61970.1  32 VYRDPVLRHWTRHPVDDardahrwmvrsRQGW---AAGRRFAfAVREprrdggDRLVATVVLKDVLP-SRPHAEI-GYWTAAWARGRGVAPRAVQ 121
                     55555555566666666443211112222222...33322222444467778888*****8888877.9999*99.9****************** PP

                     HHHHHHHHT....TESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  84 aleeraree....gikkivlaveedndaairlYeklGF 117
                     a+ ++a+ +    g++++ l +++dn+a++r+ ek G+
      KIR61970.1 122 AVTDWAFTRfaatGLTRLDLLHQVDNTASCRVAEKAGY 159
                     ********999988899*999***************98 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.5      0.21   1.2e+03       3      17 ..      46      60 ..      38      69 .. 0.84
   2 ?   13.8   0.0     6e-06     0.036      88     142 ..     107     164 ..      98     166 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.21
                    GGGHHHHHHHCTSCC CS
  Acetyltransf_8  3 eaDlellhrWmnrpr 17
                     +D+   hrWm r r
      KIR61970.1 46 VDDARDAHRWMVRSR 60
                    578999999998765 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 6e-06
                     SHHHCTTTCHHHHHHHHHHHHHC...CTT--EEEE--BTT-HHHHHHHHHTT-EEEEE CS
  Acetyltransf_8  88 eaeargkglttallralvhylfa...dprtrrvvvEPdvrNerairllekaGfekeke 142
                      a+arg+g++++ ++a+++++f+     + +r  +  +v+N+++ r+ ekaG+ ++++
      KIR61970.1 107 AAWARGRGVAPRAVQAVTDWAFTrfaATGLTRLDLLHQVDNTASCRVAEKAGYPFQET 164
                     4789******************634355888999999***************988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.56
# Mc/sec: 1028.00
//
Query:       KIR61971.1  [L=275]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-34  117.7   0.2    1.3e-33  116.1   0.2    1.7  1  adh_short      short chain dehydrogenase
    5.8e-21   75.1   0.8    8.6e-21   74.6   0.8    1.3  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    2.4e-11   43.6   0.0    5.9e-11   42.3   0.0    1.7  1  Epimerase      NAD dependent epimerase/dehydratase family
     0.0071   16.3   0.8          4    7.3   0.0    2.3  2  KR             KR domain
  ------ inclusion threshold ------
      0.015   15.0   1.3      0.019   14.7   1.3    1.4  1  CHASE2         CHASE2 domain
      0.015   14.4   0.1      0.026   13.6   0.1    1.4  1  RmlD_sub_bind  RmlD substrate binding domain
       0.24   10.7   0.0       0.44    9.9   0.0    1.4  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.2     5e-37   1.3e-33       3     189 ..       9     182 ..       7     186 .. 0.93

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 5e-37
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeew 101
                 +lvtGa + +Gr ++ +l ++Ga+vv +d ++ +              a ++ vD++d +++ ++v +av++lg+ld+LvnNAG+ g++p++   ++++
  KIR61971.1   9 ALVTGARGTFGRHLCAALHAAGARVVGLDLHAHDD-----------PAAPVLGVDLSDPAATATAVTAAVDRLGGLDLLVNNAGVGGPAPAELPPDDTV 96 
                 8**************************99885543...........2378999********************************9999998888888* PP

                 HHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short 102 ervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 ++ ievNl ++  +t+a+lpa++ +  Gr+++v+S  +  p++  aaY+ sK a+++++++l+ e+ ++ + v++v+P +v++++  +
  KIR61971.1  97 RQQIEVNLLAAWRTTAAALPALV-ADHGRVIFVASRMAVLPLPLAAAYGVSKRALVAYADALRLEVGTH-VGVTVVYPSMVASPIHDS 182
                 *********************88.999*****************************************9.************998765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.8   3.4e-24   8.6e-21       1     186 [.      13     187 ..      13     219 .. 0.90

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 3.4e-24
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   Ga    Gr++  al+++Ga+vv  dl+  +         +  a vl +D +d+++ +++v ++v+++g+lD lvnnag+  +  +p++  +++ +++
    KIR61971.1  13 GARGTFGRHLCAALHAAGARVVGLDLHAHD---------DPAAPVLGVDLSDPAATATAVTAAVDRLGGLDLLVNNAGVGGP--APAELPPDDTVRQ 98 
                   5666789********************998.........3345699************************************..99888899***** PP

                   HHHHHTHHHHHHHHHHHH.HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHH CS
  adh_short_C2  98 aldvnlyslfllakaalp.lmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfd 186
                    ++vnl ++++++ aalp l++++g+++ ++s  a   +p  +ayg++K al+a + +l  e+g   + v +v p++++ ++ ++ +++ 
    KIR61971.1  99 QIEVNLLAAWRTTAAALPaLVADHGRVIFVASRMAVLPLPLAAAYGVSKRALVAYADALRLEVGT-HVGVTVVYPSMVASPIHDSTARAG 187
                   ******************888888****************************************9.999*********999988776555 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   2.3e-14   5.9e-11       1     176 [.       9     179 ..       9     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 2.3e-14
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HH....HHHHHHHHH.T-SEEEE--S---HHHHHHSHHHHHHHHTHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrs....alerlfkee.qpdavihlAavggvaassedpadfieknlqg 94 
                 +lVtGa+G  G++l+ al ++g +v+gld   ++++ a      +  +dl d++    a+++++++  + d  ++ A+vgg+a     p d+++   q+
  KIR61971.1   9 ALVTGARGTFGRHLCAALHAAGARVVGLDLHAHDDPAA-----PVLGVDLSDPAatatAVTAAVDRLgGLDLLVNNAGVGGPAPAELPPDDTVR--QQI 100
                 59***************************995555544.....899******9978888999999999***********************998..789 PP

                 HHHHHHHHHHHTCT.........EEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-E..EEEEEESEEESTT CS
   Epimerase  95 tlnlleaarkagvk.........rllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqygln..aiilrlfnlyGpr 176
                  +nll a r++ +          r++f+ S           +  ++   pl+   +Y+++K+a   ++ a++ + g++  ++++ ++ + +p 
  KIR61971.1 101 EVNLLAAWRTTAAAlpalvadhgRVIFVAS-----------RMAVL---PLPLAAAYGVSKRALVAYADALRLEVGTHvgVTVVYPSMVASPI 179
                 99*******887722222222223333333...........34445...9999**********************966215677777777776 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.4    0.0017       4.3       4      28 ..      10      34 ..       8      46 .. 0.92
   2 !    7.3   0.0    0.0016         4      57     162 ..      48     156 ..      37     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0017
                EEETTTSHHHHHHHHHHHHHHS-EE CS
          KR  4 litGGlGgLGlelarwlaekgarhl 28
                l+tG+ G +G++l+  l + gar +
  KIR61971.1 10 LVTGARGTFGRHLCAALHAAGARVV 34
                9*********************976 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0016
                 E----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH--TT-HHHHHH CS
          KR  57 vvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelled...esldffvlfSSiagllgsagqanYaaa 152
                 v+ +D+sd++a +++++++ ++ + +   ++ Agv   ++ e   +++++q ++  + +aw    +  +    +   +++++S  ++l  +  a+Y   
  KIR61971.1  48 VLGVDLSDPAATATAVTAAVDRLGGLDLLVNNAGVGGPAPAELPPDDTVRQQIEVNLLAAWRTTAAALPalvADHGRVIFVASRMAVLPLPLAAAYGVS 146
                 6779*************************************************9999999998877665555555568999999999999999999888 PP

                 HHHHHHHHHH CS
          KR 153 NaflDalaey 162
                    l a+a+ 
  KIR61971.1 147 KRALVAYADA 156
                 7777777665 PP

>> CHASE2  CHASE2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.3   7.2e-06     0.019      58     139 ..      21     143 ..      15     268 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.2e-06
      CHASE2  58 rllerLeaagakaiglDilfse.peey........dealaealakgpnvvpaaaglGfvnvvpDa.............DgvvRr....pllvese.... 126
                 +l + L+aaga+++glD+  ++ p +          +a a+a+       +a ++lG  ++  ++             D +vR+    +ll+  +    
  KIR61971.1  21 HLCAALHAAGARVVGLDLHAHDdPAAPvlgvdlsdPAATATAV------TAAVDRLGGLDLLVNNagvggpapaelppDDTVRQqievNLLAAWRttaa 113
                 57889*************4444244337766665322222222......22337777777744334666666666666999999666655533235565 PP

      CHASE2 127 ...................lipslalalalry 139
                                        l+l la++y
  KIR61971.1 114 alpalvadhgrvifvasrmA--VLPLPLAAAY 143
                 44444444444443333221..2222233322 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1     1e-05     0.026       2      50 ..       8      66 ..       7     115 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1e-05
                   EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT..........T--TTSHHHHHHHHHHH CS
  RmlD_sub_bind  2 kilvtGanGqlGseLakqlaeeglevlaltre..........eldltdaeavaellkea 50
                   + lvtGa+G  G++L ++l+++g+ v++l+ +           +dl+d++a a+++ +a
     KIR61971.1  8 RALVTGARGTFGRHLCAALHAAGARVVGLDLHahddpaapvlGVDLSDPAATATAVTAA 66
                   679**************************988899999999999999999988888654 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00017      0.44       1      30 [.      10      39 ..      10      48 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00017
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEE CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrr 30
                   L+TG  G  G +l+  L + g +v+g++ +
     KIR61971.1 10 LVTGARGTFGRHLCAALHAAGARVVGLDLH 39
                   9*************************9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 1872.24
//
Query:       KIR61972.1  [L=439]
Description: monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-64  218.1   0.0    2.2e-64  217.8   0.0    1.0  1  FMO-like       Flavin-binding monooxygenase-like
    1.5e-16   60.5   0.0      9e-14   51.4   0.0    2.6  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      2e-14   53.5   0.0    2.1e-10   40.3   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.5e-08   34.2   0.2    6.2e-07   28.9   0.0    2.7  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    0.00014   22.0   4.1     0.0002   21.5   1.4    2.7  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00016   21.4  13.4          1    8.9   0.0    3.4  4  DAO            FAD dependent oxidoreductase
     0.0031   17.5  10.0       0.12   12.3   4.0    3.7  3  NAD_binding_9  FAD-NAD(P)-binding
  ------ inclusion threshold ------
       0.02   15.4   2.0        1.4    9.5   0.0    2.6  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.024   13.7   1.0       0.17   10.9   0.1    2.1  2  FAD_binding_2  FAD binding domain
       0.05   12.3   3.2          1    8.0   2.1    2.8  3  HI0933_like    HI0933-like protein
      0.061   13.8   1.0        1.6    9.2   0.1    2.7  2  NAD_binding_7  Putative NAD(P)-binding
        0.2   10.7   2.0       0.41    9.7   0.6    1.9  2  GIDA           Glucose inhibited division protein A
        1.7    7.8   3.0       0.77    9.0   0.6    1.5  2  Thi4           Thi4 family


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.8   0.0   1.6e-67   2.2e-64       3     438 ..       6     423 ..       4     431 .. 0.87

  Alignments for each domain:
  == domain 1  score: 217.8 bits;  conditional E-value: 1.6e-67
    FMO-like   3 kvaviGaGvsGlasikccleegleptcfersddiGGlwrfkenveeGrasiyksvvsnsskemscfsdfplpedypnflhnsklleylklfakefdllk 101
                 +vaviGaG +Gla++k+  + g+  + fe +d iGGlw +        +  y+++  n+s+  + f+d+p+p ++p++ ++ ++  yl+ +a++f+ll 
  KIR61972.1   6 RVAVIGAGAAGLATLKALADAGVPAAAFEATDTIGGLWVYGAP----DSPAYRTLHLNTSRTRTQFADHPMPAHWPDYPDHTRVAGYLRDYAHRFGLLD 100
                 8*************************************99753....3467************************************************ PP

    FMO-like 102 yiqfkttvcsvkkrpdfstsGqwevvtekegkkesavfdavmvctGhhvnphlplesfpGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggdiav 200
                  ++++ tv+ v++ pd     +w v t+    +      av+v  Gh   p  p   +p       + +hs+ y+ pe + g+rvlv+G Gns+ diav
  KIR61972.1 101 TVRLRHTVVGVTRGPDD----RWTVRTTGPHGTSDVTVAAVVVANGHNRVPRPPA-PLPAG-DCTAEQLHSHAYRGPEQLAGRRVLVVGGGNSAMDIAV 193
                 ***************95....8***99888777777789*********9998665.56654.5677889****************************** PP

    FMO-like 201 elsrtaeqvllstrsGswvlsrvsdsGypwdmllvtrfksllknilptalsnwlvekklnkrfn.henygl.kpkkralakepvlndelparilaGavk 297
                 ++s+ta++ lls r+G wv+ +    G p d l        l++ lp +l + + +  l + +     ygl  p+++ l+ +p+l d l +r+  G ++
  KIR61972.1 194 DASHTARRTLLSLRRGVWVVPKHL-LGRPSDTLN-----GALARRLPWRLRQRISQTLLTATVGpPTRYGLpAPTHGFLQDHPTLSDGLLSRLTHGEIE 286
                 ********************9875.79**99863.....34555555555555555555555541578**96699************************ PP

    FMO-like 298 vkssvkeltetsaifedgtveedidvvifatGytfafpfleeslvkveknkvslykkvfpanlekptlaiiGliqplGsilptvelqarwavrvlkGlk 396
                  ++ v  +    + f dg v + +d+v+++tGy  + pfl+  l+    +++ ly++vf  +l+ p la +Gl+q+ G+++p  e qar ++  l G  
  KIR61972.1 287 ARPGVAAFHGDQVEFTDGRV-DTVDLVVWCTGYRVEVPFLDPGLLGTGPDTLPLYRHVF--HLDAPGLAFVGLMQSTGAAFPLLEAQARLVAARLAGRY 382
                 *****************965.89***********************************9..799****************************9999988 PP

    FMO-like 397 klpsekelleeitekkekkakrfgesksktiqtdyiayldel 438
                   p+     +   ++    + r+g  ++ +++ d+ +yl +l
  KIR61972.1 383 APPAPAAQRAACRAELRAATARWG-DRRPAMRVDFDTYLAQL 423
                 877766655555555555555555.34556666666666665 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   6.5e-17     9e-14       2     197 ..       9     209 ..       8     233 .. 0.76
   2 !    6.0   0.0    0.0043         6     246     290 ..     298     341 ..     286     347 .. 0.86

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 6.5e-17
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkg.nignsiyry.....pkemtf.ispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevak 92 
                  +iGaG+aGla+  +l +ag+      E   +ig  +  y     p+ +t+ + +s t +++  + ++a             +++    ++ Ylr +a+
   KIR61972.1   9 VIGAGAAGLATLKALADAGV-PAAAFEATdTIG-GLWVYgapdsPAYRTLhLNTSRTRTQFADHPMPA----------HWPDYPDHTRVAGYLRDYAH 94 
                  8*******************.678999994555.4445522111333332133343333333333322..........23468999************ PP

  Pyr_redox_3  93 sfel..piklfeeVesvkk.edegfevetske....tyeAkkviiAtGefdkPnkln.ipGeek..lvkhyskvkefhkyagqkvvViGgknSavDaA 180
                  +f l   ++l ++V  v++  d+  +v+t+      +++   v++A G    P+ +   p  +    + h++ ++ ++++ag++v+V+Gg+nSa+D+A
   KIR61972.1  95 RFGLldTVRLRHTVVGVTRgPDDRWTVRTTGPhgtsDVTVAAVVVANGHNRVPRPPApLPAGDCtaEQLHSHAYRGPEQLAGRRVLVVGGGNSAMDIA 192
                  ****777************779*******974334589999********99999764244333223678***************************** PP

  Pyr_redox_3 181 lelvrkgaeVtvvtrgs 197
                  ++   +  +  +  r+ 
   KIR61972.1 193 VDASHTARRTLLSLRRG 209
                  *9988877666666655 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0043
  Pyr_redox_3 246 kvktedgkkvevkddvvlatGykpdlsflkkslfeldedgrpvlt 290
                  +v+++dg+  ++ d vv +tGy+ ++ fl+  l+ +  d+ p++ 
   KIR61972.1 298 QVEFTDGRV-DTVDLVVWCTGYRVEVPFLDPGLLGTGPDTLPLYR 341
                  688999865.666999**************999999999988875 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.6e-13   2.1e-10       2     167 ..       6     201 ..       5     225 .. 0.68
   2 !   11.1   0.0   0.00013      0.17     208     244 ..     293     325 ..     269     333 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.6e-13
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE..................TTHCHHHCSHHHHCHHHHHHHHHHHHH........................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxx........................ RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve..................legtclnggcllskallgvaedaeias........................ 57 
                  +v+viG+G+AGla+ + la ag+  + +e                               +  l++++ + +++                        
   KIR61972.1   6 RVAVIGAGAAGLATLKALADAGVPAAAFEatdtigglwvygapdspaY-----------RTLHLNTSRTRTQFAdhpmpahwpdypdhtrvagylrdy 92 
                  89**************************77777334444433322220...........222222222222222455555588888777777799955 PP

                  HHHHCHHHHCCCCHCCTCEEEEESC.EEEEETEEECTCEEEEEESEEEE---E.EE-BC..TCT.TC.TTBEECCSECHHHHHHCCSS-TSEEEEES- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx..xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 evvkklnqgielllgeevvkidpgk.kkvklekkkegdeekiaydklvlAtGs.sprdl..gip.GvaenvgklvrtldsaealklkllpkrivvvGg 150
                      +++   +++l+++vv++ +g   + +++++    + +++  ++v+A G  +  ++  ++p G+   ++   +   +a +  ++l  +r++vvGg
   KIR61972.1  93 A--HRFGLLDTVRLRHTVVGVTRGPdDRWTVRTTGPHGTSDVTVAAVVVANGHnRVPRPpaPLPaGD---CTAE-QLHSHAYRGPEQLAGRRVLVVGG 184
                  3..34444445555556999997775566665555477889***********444444425555444...4444.778889999999999******** PP

                  SHHHHHHHHHHHHHT-E CS
                  xxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 151 GyiGvElAaalaklgke 167
                  G+ ++++A  ++  + +
   KIR61972.1 185 GNSAMDIAVDASHTARR 201
                  ********997666443 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00013
                  EEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 208 eidgngeklevvledgeeidadlvvvavGvrpstell 244
                  ++ g++    v+ +dg++  +dlvv+++G+r + ++l
   KIR61972.1 293 AFHGDQ----VEFTDGRVDTVDLVVWCTGYRVEVPFL 325
                  344444....89*******************987766 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.39   5.4e+02     191     212 ..       4      25 ..       2      35 .. 0.75
   2 !   28.9   0.0   4.5e-10   6.2e-07     101     216 ..      88     201 ..      78     210 .. 0.79
   3 ?    1.4   0.0       0.1   1.4e+02     322     341 ..     300     319 ..     279     320 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.39
  K_oxygenase 191 kkriaVvGsGqSaaeifedllr 212
                  + r+aV+G+G  +   ++ l++
   KIR61972.1   4 PPRVAVIGAGAAGLATLKALAD 25 
                  5689999999888776666655 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 4.5e-10
  K_oxygenase 101 YlrWvasqle..eqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvG..tepkiPevleklegkervvHsseylerkeellakkri 194
                  Ylr  a+++   ++vr  ++v  v+   ++   ++tv+++ ++g+++ +   ++v++ G    p  P+ l + + +++ +Hs+ y   +  +la++r+
   KIR61972.1  88 YLRDYAHRFGllDTVRLRHTVVGVTRGPDD---RWTVRTTGPHGTSDVTV-AAVVVANGhnRVPRPPAPLPAGDCTAEQLHSHAYRGPE--QLAGRRV 179
                  77777777665577999999*999999975...79***998999765554.46777766336778888888777789999**9998876..9****** PP

  K_oxygenase 195 aVvGsGqSaaeifedllrrqkk 216
                  +VvG+G Sa +i+ d+ +++++
   KIR61972.1 180 LVVGGGNSAMDIAVDASHTARR 201
                  *************999877654 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.1
  K_oxygenase 322 esgeeetlevdavvlATGYr 341
                  e  + ++ +vd vv +TGYr
   KIR61972.1 300 EFTDGRVDTVDLVVWCTGYR 319
                  555667889**********8 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   1.4   1.4e-07    0.0002       1      36 [.       9      44 ..       9      91 .. 0.74
   2 ?   -1.3   0.1         2   2.7e+03       1      13 [.     181     193 ..     181     204 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.4e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraa 36
                   ++GaG++Gl++  +La+ag+    +e+ d +GG + 
     KIR61972.1  9 VIGAGAAGLATLKALADAGVPAAAFEATDTIGGLWV 44
                   8*******************************9654 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2
                    EE--SHHHHHHHH CS
  NAD_binding_8   1 IvGaGlsGlvaAy 13 
                    +vG+G s++ +A 
     KIR61972.1 181 VVGGGNSAMDIAV 193
                    8****99987775 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   3.4   0.00097       1.3       1      33 [.       6      40 ..       6      47 .. 0.89
   2 !    8.9   0.3   0.00075         1     156     207 ..      93     146 ..      75     179 .. 0.65
   3 ?   -2.6   0.1       2.2     3e+03       2      18 ..     179     195 ..     178     222 .. 0.69
   4 !    8.9   0.0   0.00073         1     103     230 ..     229     349 ..     207     360 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00097
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                +v++iG+G +Gl+t  +La +g   + +e+ d +g
  KIR61972.1  6 RVAVIGAGAAGLATLKALADAGvpAAAFEATDTIG 40
                59****************99998888888887776 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00075
                 HHHTT-..EEEESECEEEEEE.EETCEEEEEEECT.EEE.EEEEEEEE--GGGHHHH CS
         DAO 156 aealGv..eilegtevtglee.edgkvwgverttp.gen.daadavVnaaGawsdll 207
                 a + G   +++++++v+g+ + +d++ w+v++t p g+  +++ avV+a+G+    +
  KIR61972.1  93 AHRFGLldTVRLRHTVVGVTRgPDDR-WTVRTTGPhGTSdVTVAAVVVANGHN--RV 146
                 45555444788999****97745555.***755556666557788******98..45 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.2
                 EEEECTSHHHHHHHHHH CS
         DAO   2 vviiGGGiiGlstAyeL 18 
                 v+++GGG   + +A ++
  KIR61972.1 179 VLVVGGGNSAMDIAVDA 195
                 89999997777777666 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.00073
                 HHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEE.EHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE-- CS
         DAO 103 lallleagldaelldaeevrelepalpgllgalfypdtgqv.dpakltaalaraaealGveilegtevtgleeedgkvwgverttpgendaadavVnaa 200
                 la++l++ l+ + +++ ++ +     p+++ +l  p+ g + d   l  +l++++  + +e + g  v ++ +    + +v + t+g++d++d vV ++
  KIR61972.1 229 LARRLPWRLR-QRISQTLLTATVG--PPTRYGLPAPTHGFLqDHPTLSDGLLSRLTHGEIEARPG--VAAF-H----GDQV-EFTDGRVDTVDLVVWCT 316
                 4555666665.3566665555553..478999999******999999********9998888888..6666.2....5566.333487777899***** PP

                 GGGHH..HH.HTT.CTTTSEEEEEEEEEEEEEEC CS
         DAO 201 Gawsd..ll.gll.keldlpispvrgqvlvlkpl 230
                 G  +   +l ++l ++  + + p+  +v++l+ +
  KIR61972.1 317 GYRVEvpFLdPGLlGT-GPDTLPLYRHVFHLDAP 349
                 *999886666444332.367799*****999654 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   4.0   8.9e-05      0.12       1     155 [.       8     143 ..       8     144 .. 0.67
   2 ?    2.4   0.0     0.098   1.4e+02     133     155 ..     296     318 ..     279     319 .. 0.87
   3 ?   -3.5   0.1       6.6   9.1e+03      84     109 ..     404     429 ..     390     434 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.9e-05
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsep.gagrvwrtdqseelllNvpasemslftddpptfaeWlrergaleeaeeldpddfvpRal 95 
                    a++GaG++Gla+l++L++       +    f+ + + g  +v+ + +s+       a ++ ++ + ++t  ++++          ++  d++    
     KIR61972.1   8 AVIGAGAAGLATLKALADAG-----VPAAAFEATDTiGGLWVYGAPDSP-------AYRTLHL-NTSRTRTQFADHPM------PAHWPDYPDHTR 84 
                    79*************99994.....777788986552544444444433.......3222222.22344455555544......356779999999 PP

  NAD_binding_9  96 yGrYlrdlfeellarlpegvtvevhraevvdleeradgq.avlladg...aslaadaVvLAlGh 155
                    +  Ylrd+++++   l +      +r++vv +++ +d + +v++++    + +++ aVv+A Gh
     KIR61972.1  85 VAGYLRDYAHRFG--LLDT---VRLRHTVVGVTRGPDDRwTVRTTGPhgtSDVTVAAVVVANGH 143
                    999********98..5443...3457799999999988635666432322459**********9 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.098
  NAD_binding_9 133 gqavlladgaslaadaVvLAlGh 155
                    g +v  +dg+  ++d Vv ++G 
     KIR61972.1 296 GDQVEFTDGRVDTVDLVVWCTGY 318
                    567899***************96 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 6.6
  NAD_binding_9  84 eldpddfvpRalyGrYlrdlfeella 109
                    ++ +++ + R  +  Yl++l +el+a
     KIR61972.1 404 RWGDRRPAMRVDFDTYLAQLGRELAA 429
                    55566667788888888888777766 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.5     0.034        47       1      34 [.       6      39 ..       6      42 .. 0.83
   2 ?    9.5   0.0     0.001       1.4       1      23 [.     178     200 ..     178     210 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.034
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkl 34
                +v+v+G+G  gl   +ala+ g     +e+ d++
  KIR61972.1  6 RVAVIGAGAAGLATLKALADAGVPAAAFEATDTI 39
                79**********9999999999877777766665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.001
                 EEEEECSSHHHHHHHHHHHHTTS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgk 23 
                 +v+vvGgG+++++ A  +++ + 
  KIR61972.1 178 RVLVVGGGNSAMDIAVDASHTAR 200
                 79*************98877664 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00012      0.17       2      36 ..       7      41 ..       6     146 .. 0.84
   2 ?    1.4   0.1     0.094   1.3e+02       2      27 ..     179     204 ..     178     207 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36
                   v ViG+G+AGLa   ++a+aG   a  e ++  gg
     KIR61972.1  7 VAVIGAGAAGLATLKALADAGVPAAAFEATDTIGG 41
                   89***********99******99999999887544 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.094
                    EEEE--SHHHHHHHHHHHHTTT-EEE CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvav 27 
                    v+V+G+G + +  A+ a++  +++++
     KIR61972.1 179 VLVVGGGNSAMDIAVDASHTARRTLL 204
                    9***************9998888765 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.1   0.00075         1       2      36 ..       6      40 ..       5      41 .. 0.88
   2 ?   -0.2   0.0      0.22   3.1e+02     126     168 ..     102     147 ..      98     150 .. 0.85
   3 ?    1.1   0.0     0.094   1.3e+02       2      28 ..     178     204 ..     177     207 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00075
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 +v+viG+GaAGl +  ++a++g   + +e+++++g
   KIR61972.1  6 RVAVIGAGAAGLATLKALADAGVPAAAFEATDTIG 40
                 69**********99999999999999999888776 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.22
                  EE-S--EEEEECETTE.EEEEE....TTEEEEESEEEE----SS-G CS
  HI0933_like 126 lrletevksvekeedgkfrvktk...seeeleadklvlAtGGlSiP 168
                  +rl+++v +v++  d + +v+t+   +++ ++ +++v+A G + +P
   KIR61972.1 102 VRLRHTVVGVTRGPDDRWTVRTTgphGTSDVTVAAVVVANGHNRVP 147
                  7899*********99999999943447889999******9988877 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.094
                  SEEEE--SHHHHHHHHHHHHTT--EEE CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVll 28 
                  +v+v+GgG + +  A+ a+++ +r+ll
   KIR61972.1 178 RVLVVGGGNSAMDIAVDASHTARRTLL 204
                  699***************999988876 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.17   2.4e+02       9      30 ..       6      27 ..       3      33 .. 0.90
   2 ?    9.2   0.1    0.0011       1.6       4      22 ..     173     191 ..     172     321 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.17
  NAD_binding_7  9 kvlvvGgGevAarkvrklleag 30
                   +v v+G+G  ++  ++ l++ag
     KIR61972.1  6 RVAVIGAGAAGLATLKALADAG 27
                   799*************999997 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0011
  NAD_binding_7   4 dlkgkkvlvvGgGevAark 22 
                    +l g++vlvvGgG+ A+  
     KIR61972.1 173 QLAGRRVLVVGGGNSAMDI 191
                    789***********99865 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.6    0.0003      0.41       2      38 ..       7      42 ..       6      60 .. 0.86
   2 ?   -0.3   0.0      0.31   4.3e+02       2      28 ..     179     205 ..     178     217 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0003
                EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT-- CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLithkldtiael 38
                v ViG+G AG++   a+a +G++ + + + +dti+ l
  KIR61972.1  7 VAVIGAGAAGLATLKALADAGVPAAAF-EATDTIGGL 42
                89**********************999.899999876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.31
                 EEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLi 28 
                 v V+GgG + +  A+ a+    ++lL 
  KIR61972.1 179 VLVVGGGNSAMDIAVDASHTARRTLLS 205
                 89*************999999999885 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.6   0.00056      0.77      20      59 ..       7      44 ..       5      48 .. 0.88
   2 ?   -3.6   0.1       3.8   5.2e+03      18      33 ..     177     192 ..     172     197 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00056
                EEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTT CS
        Thi4 20 vvivGaGssGLtaayylakkpdlkvailersvspGGGawl 59
                v+++GaG++GL++ + la + ++  a +e+  ++GG  w 
  KIR61972.1  7 VAVIGAGAAGLATLKALADA-GVPAAAFEATDTIGG-LWV 44
                89******************.*********999875.565 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.8
                 EEEEEE--SHHHHHHH CS
        Thi4  18 sDvvivGaGssGLtaa 33 
                   v++vG+G s +  a
  KIR61972.1 177 RRVLVVGGGNSAMDIA 192
                 5689999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3054.21
//
Query:       KIR61973.1  [L=248]
Description: hypothetical protein TK50_31585 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-11   44.0   0.4    4.9e-11   43.2   0.4    1.4  1  Methyltransf_25  Methyltransferase domain
    2.4e-10   40.4   0.0    3.1e-10   40.1   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    9.8e-10   39.0   0.2    1.7e-09   38.2   0.2    1.4  1  Methyltransf_11  Methyltransferase domain
    7.7e-06   25.4   0.0    3.6e-05   23.2   0.0    1.9  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    1.5e-05   24.4   0.0    1.9e-05   24.1   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
      3e-05   23.9   0.0    0.00015   21.7   0.0    1.9  1  Methyltransf_23  Methyltransferase domain
    9.7e-05   23.0   0.0    0.00018   22.2   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    0.00025   20.7   0.0    0.00038   20.1   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
     0.0044   16.7   1.2       0.11   12.1   1.2    2.1  1  UPF0020          Putative RNA methylase family UPF0020
  ------ inclusion threshold ------
      0.033   14.2   0.0      0.039   13.9   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
      0.047   13.5   0.1      0.062   13.0   0.1    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.068   12.7   0.1       0.12   11.9   0.1    1.3  1  MTS              Methyltransferase small domain
      0.075   13.3   0.6       0.16   12.3   0.6    1.6  1  zf-HC2           Putative zinc-finger
       0.13   11.9   0.2       0.17   11.4   0.2    1.1  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.4   3.8e-14   4.9e-11       2      97 .]      41     134 ..      40     134 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 3.8e-14
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      Ldl+cG+G+++ +++++ g  + tgvDis  +++aar+ra e g+  +v fv+gda ++  e  ++D+  ++ga  ++    ++ ++  + r+L
       KIR61973.1  41 LDLACGSGEMLCQWSHAHG-VTGTGVDISTVFVDAARARAVELGVagRVAFVHGDAATYTAE-VEVDVAACVGA-TWIG-GGVAGTIGLLERAL 130
                      9**************9987.9*********************9999************9966.59******877.6666.56788999999999 PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      +pgG
       KIR61973.1 131 RPGG 134
                      9999 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   2.4e-13   3.1e-10       3     113 ..      36     142 ..      34     196 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 2.4e-13
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkile 95 
                       g+++lDl+CG+Ge + ++ +    + + +G+Dis   +  Ar++a +lg+  +v F +gd+ +    +    +D+  + ++       + +++
       KIR61973.1  36 PGTTLLDLACGSGEMLCQWSHAH--GVTGTGVDISTVFVDAARARAVELGVAgRVAFVHGDAATYTAEV---EVDVAACVGATWIGGGVAGTIG 124
                      6889****************643..45678**********************************66324...5*******999999999***** PP

  Methyltransf_31  96 eiervlkpggilliedpr 113
                       +er+l+pgg lli +p 
       KIR61973.1 125 LLERALRPGGLLLIGEPF 142
                      *************99886 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.2   1.3e-12   1.7e-09       1      96 []      41     138 ..      41     138 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 1.3e-12
                      EEET-TTSHHHHHHH.HTTSEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaeala.krgarvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld++cG+G +++++   +g + +gvD+s+ ++++a+++a+e g+  +v fv++da +   ++  +D+  +  +      ++ ++  + R L+pg
       KIR61973.1  41 LDLACGSGEMLCQWShAHGVTGTGVDISTVFVDAARARAVELGVagRVAFVHGDAATY-TAEVEVDVAACVGATWIGGGVAGTIGLLERALRPG 133
                      8**************6666*************************************84.5666********99888899*************** PP

                      EEEEE CS
  Methyltransf_11  92 Gllvi 96 
                      Gll+i
       KIR61973.1 134 GLLLI 138
                      **986 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.8e-08   3.6e-05      45     111 ..      34      99 ..       9     140 .. 0.84
   2 ?   -0.3   0.0      0.42   5.3e+02     195     227 ..     207     244 ..     181     247 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.8e-08
                      S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT-T CS
  Ubie_methyltran  45 vkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLp 111
                       ++g+++lD+a+G+g++  + s++ g +g+  ++Di+   ++ +++++ e g+  ++ f++++a    
       KIR61973.1  34 LRPGTTLLDLACGSGEMLCQWSHAHGVTGT--GVDISTVFVDAARARAVELGVAgRVAFVHGDAATYT 99 
                      57899******************9999995..99*******************99*******998655 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.42
                      HHHS--HH...HHHHHHHHTTEEEEEEEE..EGGGTEE CS
  Ubie_methyltran 195 irafPdqe...tlkeliedaGfksveyes..ltgGvva 227
                      + a+Pd e   +l++ ++ a +++v+y++  l+ Gv a
       KIR61973.1 207 LDAHPDDElagELRAELDTAPLRYVRYQRphLGWGVFA 244
                      56788876444677789999*******96325666665 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.5e-08   1.9e-05      48     115 ..      22      89 ..      10     138 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.5e-08
                 HHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EE CS
        CMAS  48 laKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkve 115
                  aKl ++ + l+l+pG tlLd+ cG G+++ +  + ++v   g+ +S+     a++r  el+++ +v 
  KIR61973.1  22 AAKLATLGRALRLRPGTTLLDLACGSGEMLCQWSHAHGVTGTGVDISTVFVDAARARAVELGVAGRVA 89 
                 5788889999***************************************9999999999999887765 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.1e-07   0.00015      14      62 ..      26      87 ..      12     184 .. 0.61

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.1e-07
  Methyltransf_23 14 erllpk...lraggrvLdiGcGtG.illevlrengfsvtgvDlspeaveiae..........k 62
                     + l+ +   lr+g  +Ld++cG+G  l++   ++g++ tgvD+s + v+ a+           
       KIR61973.1 26 ATLG-RalrLRPGTTLLDLACGSGeMLCQWSHAHGVTGTGVDISTVFVDAARaravelgvagR 87
                     3333.223389999**********557999999***********9888777555555544431 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.4e-07   0.00018       1      99 []      41     136 ..      41     136 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.4e-07
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++ cG+G++l  +  + ++++ tgvDis+ ++++a+++  + +   + +v + + d++    +  +D+  + ++      ++ ++  + ++L+
       KIR61973.1  41 LDLACGSGEMLCQWSHA-HGVTGTGVDISTVFVDAARARAVELG--VAGRVAFVHGDAATYTAEVEVDVAACVGATWIGGGVAGTIGLLERALR 131
                      89************999.***************66666655555..788999999999999888999999999988777999999999999999 PP

  Methyltransf_12  95 pgGrl 99 
                      pgG l
       KIR61973.1 132 PGGLL 136
                      99975 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.9e-07   0.00038      11      58 ..      34      81 ..      28      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.9e-07
        MetW 11 ikpgsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGls 58
                ++pg+++ldl cG Ge+l    + ++v+g G+++++  v ++ a+ ++
  KIR61973.1 34 LRPGTTLLDLACGSGEMLCQWSHAHGVTGTGVDISTVFVDAARARAVE 81
                5899********************************999999998875 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   1.2   8.9e-05      0.11      79     127 ..      62     109 ..      17     110 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.9e-05
                 EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE CS
     UPF0020  79 lygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivt 127
                   g+D+    v++ar  a + gv+++++f+  daa  + +e evdv ++
  KIR61973.1  62 GTGVDISTVFVDAARARAVELGVAGRVAFVHGDAATYT-AEVEVDVAAC 109
                 479********************************999.8889998665 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.1e-05     0.039      25      95 ..      36     101 ..      21     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.1e-05
  Methyltransf_32  25 galtvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsieeatss 95 
                      + +t++D+++G g +    ++    +++  +g+d+++  v++a++ra +lg  ++ r+ f +++ +++t++
       KIR61973.1  36 PGTTLLDLACGSGEMLCQWSH---AHGVTGTGVDISTVFVDAARARAVELG--VAGRVAFVHGDAATYTAE 101
                      56799*******987777777...79*************************..999*****9999888764 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   4.8e-05     0.062      58     134 ..      18      96 ..       8     138 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.8e-05
                 -HHHHHHHHHH...TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES-GG CS
        PCMT  58 aphmvalalel...lelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgDGr 134
                 +p + a++  l   l+l++g+  L++ +GsG      ++  g +g   +++ +  +v++a+++  +l+++ +v++v+gD  
  KIR61973.1  18 NPFTAAKLATLgraLRLRPGTTLLDLACGSGEMLCQWSHAHGVTG--TGVDISTVFVDAARARAVELGVAgRVAFVHGDAA 96 
                 5555555544422277*****************999999999999..89999999******9999999888********75 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   9.2e-05      0.12      28     100 ..      33     106 ..      24     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.2e-05
                 HCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS-EEE CS
         MTS  28 pkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeveekkfdl 100
                   +   ++lDl+cG G + ++  +++   + t vd+++  +++a++ + + +++  v +v+ d+   ++e ++d+
  KIR61973.1  33 RLRPGTTLLDLACGSGEMLCQWSHAHGV-TGTGVDISTVFVDAARARAVELGVAgrVAFVHGDAATYTAEVEVDV 106
                 55567789*********99999887665.799******************9999888999999988888777776 PP

>> zf-HC2  Putative zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   0.00012      0.16       4      25 ..     203     224 ..     202     226 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
                 HHHHHHHHHCCT-SCCCHCCCH CS
      zf-HC2   4 vrelLsaYlDGeLspeerarve 25 
                 vr++L+a  D+eL++e ra+++
  KIR61973.1 203 VRRWLDAHPDDELAGELRAELD 224
                 89******************97 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00013      0.17       2      77 ..      38     112 ..      37     120 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
  Methyltransf_15   2 rvilDlfsGaGGnviqfalvfekvi..aieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvfl 77 
                      +++lDl +G+G    q  + +  v   +++i++  +  a   a   gv+ ++ +v+gd  + +a+++++++   +v +
       KIR61973.1  38 TTLLDLACGSGEMLCQWSHAH-GVTgtGVDISTVFVDAARARAVELGVAGRVAFVHGDAATYTAEVEVDVA--ACVGA 112
                      579*************99974.5550156666666677777777789***************999988877..66655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1694.16
//
Query:       KIR61974.1  [L=446]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-59  200.7  24.8    3.3e-59  200.6  24.8    1.0  1  MFS_2     MFS/sugar transport protein
    1.3e-07   30.9  49.8    1.3e-07   30.9  49.8    2.4  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.6  24.8   3.7e-63   3.3e-59       1     426 [.      19     439 ..      19     440 .. 0.95

  Alignments for each domain:
  == domain 1  score: 200.6 bits;  conditional E-value: 3.7e-63
       MFS_2   1 syglgalaanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiillftppelsqs..akf 97 
                 ++++g+l+ ++  ++ ++ ll+F+tdvl + ++l+gl+ll+ ++vD+++ p vG+ +d  s+r+G rr  lll++ +l +++++lf++p+ + +  + +
  KIR61974.1  19 GFAAGSLGMGVWVTVPGLLLLYFLTDVLAVAPWLAGLALLAPKVVDVLVHPWVGHRSDAESARRGDRR-RLLLAGCALPAAFAALFAVPG-GLTgvGAA 115
                 599**************************************************************999.788888888889********9.44458*** PP

       MFS_2  98 iwllvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtker 196
                 +w+++++++  +l++++++py +  + l   y+eRt+l+++r+++ ++g ++  +la+ll +  ++   +r gy  ++l+    +l+++++ v+g  + 
  KIR61974.1 116 AWVAAWFVAGNLLFAAYQVPYLATPADLRIGYHERTRLMAFRMVVLTAGILASGLLAPLLTGGDAA---TRGGYQRMGLLLGGGALAAMLVGVAGIGRL 211
                 ************************************************************999999...*********999888888888888888766 PP

       MFS_2 197 vemrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllg 295
                 +  r + +t+q+ +   +++l + +r+ +f++l++++l+ ++++ +  + + Yy++y lg  +  +v+ ++++++all++p w ++a+r gk+++ l++
  KIR61974.1 212 R--RAAGTTAQRHAPGGWRALAAALRDGQFRWLVAAYLAMSTTTHLVLAGVPYYAEYELGRPALTTVLVAAFVAPALLVTPGWLAVARRAGKQRALLVA 308
                 5..55789******************************************************************************************* PP

       MFS_2 296 alltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllLsafgy....raka 390
                 + + +++++++ +  p+ l ++++++++ g+++++++llp +m++dvv +     G+  +g++++v+++++  ++++g  +++  L+a g+      + 
  KIR61974.1 309 QGAFAAGSLVLAVGAPAGLPVLVAAVTVLGVAFAGMQLLPFAMMPDVVRAA----GTTGAGTYTGVWTATEATGAALGPYAYAVCLTAGGFvastGGQV 403
                 *99999998888888*********************************875....7999********************************99776777 PP

       MFS_2 391 svqspqvvlalrllyavlpavlllvallllvrypln 426
                  +q++++ +a+r+ + +lpa+l+l+a+ll  ry l+
  KIR61974.1 404 IDQPDAAGAAIRYGFGLLPAALMLAAVLLQRRYTLD 439
                 799******************************998 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9  49.8   1.5e-11   1.3e-07       9     353 .]      26     383 ..      18     383 .. 0.69
   2 ?   -2.2   0.7      0.17   1.5e+03     250     296 ..     386     430 ..     384     438 .. 0.55

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.5e-11
       MFS_1   9 alarsilgpalpl..alaedlgispseigllltlyalgaavaslplGrlsd....rfG.rrrvlllglllfalglllllfa.....sslwlllvlrvlq 95 
                 +++ +++ p l l  +l++ l ++p  +gl+l +  ++ ++  + +G+ sd    r G rrr+ll+g +l a++++l++++      +  +++++++++
  KIR61974.1  26 GMGVWVTVPGLLLlyFLTDVLAVAPWLAGLALLAPKVVDVLVHPWVGHRSDaesaRRGdRRRLLLAGCALPAAFAALFAVPggltgVGAAAWVAAWFVA 124
                 455555444443333556667777777777777777777999999999999888877746667777777777773555533233232233355555555 PP

       MFS_1  96 Glga.galfpagaaliadwfpk.eergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgt 191
                 G    +a+    +a  ad+  +  er+r +++ ++   +G++   ll++ll+   +  r+ +  +++++  +++ ++l+ ++   + +r ++++  +++
  KIR61974.1 125 GNLLfAAYQVPYLATPADLRIGyHERTRLMAFRMVVLTAGILASGLLAPLLTgGDAATRGGYQRMGLLLGGGALAAMLVGVAGIGRLRRAAGTTA-QRH 222
                 544446666666666666666666*************************9995555577777777777777666433444333333333333333.455 PP

       MFS_1 192 gpaplvpawkallkdpvl.willialllfffgfsglltllplylqevlgls...glllaglllallalvgailallagrlsdrlgrrrrlllallllll 286
                 +p +++  + a l+d ++ w l++a l +++ + ++l+ +p y+   lg +   ++l a+  + ++al++    + + ++++r g++r+ll+a +++++
  KIR61974.1 223 APGGWRA-LAAALRDGQFrW-LVAAYLAMSTTTHLVLAGVPYYAEYELGRPaltTVLVAA--FVAPALLV---TPGWLAVARRAGKQRALLVAQGAFAA 314
                 7778888.666666666659.88888888889999********99999999554333333..44444444...77899999****************** PP

       MFS_1 287 aalglallavtssavllllvlvliGfglgfvfpsllalasdla...ppeeagtasglfntagslggalgp 353
                 ++l la+ a++  +vl+++ + ++G++++ ++ + +a++ d++   ++  agt++g+ + + + g+algp
  KIR61974.1 315 GSLVLAVGAPAGLPVLVAA-VTVLGVAFAGMQLLPFAMMPDVVraaGTTGAGTYTGVWTATEATGAALGP 383
                 ***********77777775.55568888888888888888888444778888*****************8 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.17
       MFS_1 250 lallalvgailallagrlsdrlgrrrrlllallllllaalglallav 296
                 +a++  +g ++a  +g+++d   +  +   +  ++ l+ ++l+l+av
  KIR61974.1 386 YAVCLTAGGFVASTGGQVIDQPDA--AGAAIRYGFGLLPAALMLAAV 430
                 555566666666667777776333..555555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.20s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3582.03
//
Query:       KIR61975.1  [L=381]
Description: hypothetical protein TK50_31600 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2502  (0.13955); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                       178  (0.00992805); expected 17.9 (0.001)
Passed Fwd filter:                        58  (0.00323498); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.42u 0.40s 00:00:01.81 Elapsed: 00:00:00.57
# Mc/sec: 1997.74
//
Query:       KIR61976.1  [L=184]
Description: exlusion protein FxsA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-27   95.1  11.1    3.5e-27   94.7  11.1    1.2  1  FxsA      FxsA cytoplasmic membrane protein
  ------ inclusion threshold ------
       0.16   12.1   2.6       0.26   11.4   2.6    1.3  1  SLATT_3   SMODS and SLOG-associating 2TM effector domain 3


Domain annotation for each model (and alignments):
>> FxsA  FxsA cytoplasmic membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7  11.1   3.9e-31   3.5e-27       2     107 ..      11     116 ..      10     122 .. 0.95

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 3.9e-31
        FxsA   2 lllllpvlEilllvlvasaiGvlatllllvltallGallvrrqgrralrrlqeklaqgelpaeelldglllllggvLLllPGfvtdvlGlllllPptRk 100
                 ++l+ +v+E++++v v++a+G++ ++ll+++++llG++l+rr+g+ra+r ++ ++++g +p+ +++dgl+ llg++LL++PG+v+ v+Gllll+Pp+R+
  KIR61976.1  11 AALAAVVAELAVFVGVGRAVGFGSAVLLVFAASLLGLVLLRREGMRAWRGFRAAAQAGAPPGPQVTDGLVGLLGALLLAVPGLVSGVVGLLLLVPPVRR 109
                 568999********************************************************************************************* PP

        FxsA 101 llrrllk 107
                 l+ + ++
  KIR61976.1 110 LAGAGVR 116
                 *766554 PP

>> SLATT_3  SMODS and SLOG-associating 2TM effector domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.6   2.9e-05      0.26      29      82 ..      11      65 ..       2      67 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.9e-05
     SLATT_3 29 lvvAAlaaalslkvgsvdlaallaalaf.llalvievvlarrrperkWyegRavA 82
                + +AA++a l++ vg ++++ + +a+++ ++a ++++vl rr+  r+W   Ra+A
  KIR61976.1 11 AALAAVVAELAVFVGVGRAVGFGSAVLLvFAASLLGLVLLRREGMRAWRGFRAAA 65
                456777777787777788888877766515677899******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1272.27
//
Query:       KIR61977.1  [L=525]
Description: acyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-14   53.1   0.1    4.5e-14   52.4   0.1    1.4  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.1   2.5e-18   4.5e-14       2     257 ..     225     482 ..     224     486 .. 0.86

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 2.5e-18
                   EEEEEBB-......STTHHHHHHHHHHHHHHH.....HHHT..TESEEEEETTTTTBSSSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEE CS
  CN_hydrolase   2 vAvvQlpq......kaadleanlqklleliae.....Aark..gadLivlPElfitgykeeahfleaAeaglgetlallaalarkngiavviglier 85 
                   vAvvQ +       ++a+++a l +++++        Aa +  + dL+v+PE +        ++l +A a    +  ++aa+a +  i+v + l + 
    KIR61977.1 225 VAVVQGNVprlgldFNAQRQAVLNNHVQATLDlaaqvAAGQrrQPDLVVWPENASD-----IDPLRSAAA---GERIGVAAAAVRAPILVGAVLVGP 313
                   8999988888888855555555555555544444445333346**********997.....344444443...5899*******************9 PP

                   ECCTTEEEEEEEEEEEETTSEE..EEEEE-SS--E.ECTTSCECCGHHTSCS..........-SSS-EEEETTEEEEEEEGGGGGSHHHHHHHHHTT CS
  CN_hydrolase  86 eltngklqayntavlldldgkl..vgkyrKlhLfp.geprpptaverelfep..........gdgipvfdtpvgkiGaaiCyeigfpellralalkg 169
                      +g+    n+++l  ++      + y K+h +p  e+ p + v r + ++          gd+  v+d   + +G  iC e  ++ l+r   + g
    KIR61977.1 314 --GPGQS--QNAGILWRPGAGPdlEQMYTKRHPVPfAEYVPLRDVARMISKEvdrvrsdmvaGDRPGVVDAGAVTVGDVICFEVAYDGLVRDTVTGG 406
                   ..88988..9*****999887777*************************************99999999**************************** PP

                   -SEEEEBH.GCCCTCHHHHHHHHHHHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEEHHHHH CS
  CN_hydrolase 170 aeilvnlserapvpksmgppqwellgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeegvliaeidladvr 257
                   a++lv  ++ a++ ++ +  q +++ r ra+e g   ++a+ vg+           S +++ dGr+  + g +++ v+  ++ l+d r
    KIR61977.1 407 AQVLVVQTNNATFDVAEARQQ-LAMVRLRAVEHGRASLMASTVGV-----------SGFVGADGRVSDATGFNTRAVVSRQLRLGDGR 482
                   ******888999999888887.999********************...........*********************99999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3840.67
//
Query:       KIR61978.1  [L=445]
Description: glutamate mutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.6e-126  422.5  13.5   1.8e-126  422.4  13.5    1.0  1  MutL        MutL protein
      0.006   16.3   1.2       0.52   10.0   0.1    2.4  2  Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region


Domain annotation for each model (and alignments):
>> MutL  MutL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  422.4  13.5  2.1e-130  1.8e-126       2     452 .]       5     442 ..       4     442 .. 0.97

  Alignments for each domain:
  == domain 1  score: 422.4 bits;  conditional E-value: 2.1e-130
        MutL   2 lviDiGSttTkvtlvdlekvderllgqaeapTtveeedvleGleealeeleeklgktevdevlatSSAaGgLkmvviGlvedltaeaarraAlgAgakv 100
                 +++D+GSt+Tk+++vdl++  +rl+g +++pTtv  +dvl+Gl++a+ + +++ g  +   ++++SSA+GgL+++v+G+++ +ta+a+rr+ l+Aga v
  KIR61978.1   5 VCVDVGSTYTKAVVVDLDA--GRLVGAGASPTTVG-SDVLRGLDAAVGAATAAAG-VGDVPWYVCSSAGGGLRLAVVGYEALVTAQAGRRVGLSAGADV 99 
                 89***************88..*************8.****************977.7999*************************************** PP

        MutL 101 lkvlageltredleelrelrpdiiLLaGGtDgGnkevllenAellaeaklklpviyAGNkaareeveeiLeeagkelvvtdNvlPkldelnveparkaI 199
                 ++v ag+l ++++ +lr++rpd++LL+GGtDgG+ evl+ nA +la+a++++pv++AGN+++ree++++L+ ag++++v+dNvlP++++l++ +ar aI
  KIR61978.1 100 VHVAAGRLGAAQVSALRAARPDVVLLVGGTDGGDAEVLTLNATRLARARWRVPVVLAGNVDVREELRAVLAGAGVPVTVADNVLPRIGVLEPGSARAAI 198
                 *************************************************************************************************** PP

        MutL 200 revFlehivkakglskleelvsaeimpTPaAvlkavellaeeeekglgdllvvDvGGaTTdvhsvaegspekekvllk.lpeprakrtVegdLGmrvsa 297
                 revFl+h++ +k+ls+  ++ + ++++TP+Avl++ve+la+   +  gdl+vvDvGGaTTdv+sv++ +++ ++   + + + + +rt egdLG+r+sa
  KIR61978.1 199 REVFLRHVIGGKRLSRGPRFGRLVRAATPDAVLTGVEVLAD---AVGGDLVVVDVGGATTDVYSVLTPDERAAGPGREvAGSLWRARTGEGDLGVRWSA 294
                 *****************************************...3456******************************999****************** PP

        MutL 298 knvleeageeelareliseeelrerlenlmerpktiPkteeelaldealareavelaverHagtleelytplgrvvvqegkdltavkliigtGGvLtha 396
                  +v+++a +e+l++  +++ +l  ++  ++++p +++++e+ + +d ++a  a+++av+rHa+           +  + g+dl++v+l++g+GGvL+h 
  KIR61978.1 295 PGVVRAAVQERLVDA-VEAGALAVAAGVRAADPGFVAADEAGWVVDARIAALAATVAVRRHARGGA--------TGERGGRDLRDVRLLVGSGGVLRHV 384
                 ***************.5********************************************97543........34678******************** PP

        MutL 397 prp..eqilkalldakeeevllPeeaelllDkdyilaalGllaevepeaalkllkkdl 452
                 p    + +l a+l ++++++  P++a+ ++D +y+laa+Glla+ +p+aa +l++++l
  KIR61978.1 385 PAGagAGVLGAVLSDHAGGWAVPRAARAVVDVEYVLAAAGLLAADHPQAAGALVRRHL 442
                 *9987899********************************************999875 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   5.8e-05      0.52       2      50 ..       5      55 ..       4      67 .. 0.77
   2 !    4.9   0.1    0.0021        19       2      17 ..     246     261 ..     245     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 5.8e-05
  Hydant_A_N  2 igIDvGGTfTDavaldeke.eevavlKllst.pdavaegirealeevlees 50
                +++DvG+T+T av++d +  + v +   ++t   +v +g+  a++ ++ ++
  KIR61978.1  5 VCVDVGSTYTKAVVVDLDAgRLVGAGASPTTvGSDVLRGLDAAVGAATAAA 55
                89**************87756667777777777788888877777776655 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0021
  Hydant_A_N   2 igIDvGGTfTDavald 17 
                 + +DvGG  TD++ + 
  KIR61978.1 246 VVVDVGGATTDVYSVL 261
                 78**********9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 3003.78
//
Query:       KIR61979.1  [L=130]
Description: 3-aminobutyryl-CoA ammonia-lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-07   31.9   0.4      2e-07   31.3   0.4    1.4  1  4HBT      Thioesterase superfamily
     0.0013   19.3   0.0     0.0013   19.3   0.0    1.1  1  4HBT_2    Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.4   2.2e-11     2e-07      14      71 ..      39      94 ..      25     101 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 2.2e-11
                HHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEE CS
        4HBT 14 Deaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevr 71
                D+a  +++r+ g+   +++++  +++f++p r gd+++v a+v+r+g++s +++ e r
  KIR61979.1 39 DVATEVCIRTDGD--EGLFASYSEVQFRAPLRAGDVVEVVATVTRVGTRSRTIDFEAR 94
                4555555555555..8**********************************99988865 PP

>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.4e-07    0.0013      45     117 ..      53     128 ..       8     130 .] 0.77

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.4e-07
      4HBT_2  45 glilssahvryrrplkfpdrltvefrvid..idaktliiehrfls...nadgkkaarveerivvmdygkrskkapvPp 117
                 gl+ s ++v++r pl+ +d ++v+ +v++     +t+ +e+r++    ++ g  aa+v+ + +v  + ++  ++ vPp
  KIR61979.1  53 GLFASYSEVQFRAPLRAGDVVEVVATVTRvgTRSRTIDFEARVVCrgrPDRGESAAEVLAEPIVAVTATG--TVVVPP 128
                 8999999********************6655888999999999996644445459999998888877775..555665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 851.10
//
Query:       KIR61980.1  [L=519]
Description: lysine 2,3-aminomutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.5e-244  810.3   0.0   6.3e-244  810.1   0.0    1.0  1  Lys-AminoMut_A  D-Lysine 5,6-aminomutase TIM-barrel domain of
    8.4e-07   28.9   0.0    1.6e-06   28.0   0.0    1.4  1  OAM_alpha       D-ornithine 4,5-aminomutase alpha-subunit


Domain annotation for each model (and alignments):
>> Lys-AminoMut_A  D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  810.1   0.0  7.1e-248  6.3e-244       1     507 [.       5     513 ..       5     514 .. 0.98

  Alignments for each domain:
  == domain 1  score: 810.1 bits;  conditional E-value: 7.1e-248
                     S---HHHHHHHHHHHHHHHHHHHHHHHTEEEHHHHHHHHHHTT--SB-TTS-BHHHHHHHHHHHTT-TTT-HHHHHHHHHHTT--.-HHHHHHHH CS
  Lys-AminoMut_A   1 leldkekvekarelakeiaedvqelieehttvsvertvlrllGidgvdeeevPlvnvvvdklkekealekGvalllanalvetek.spqeiaekv 94 
                     l+ld ++v +arela+++ ++v++l+++httvsver+vlrl+G++g+d +++P+vn++vd++ ++  l +Gva+++++al++++  +++ +a+k+
      KIR61980.1   5 LGLDPALVGRARELARRAGQPVVDLARSHTTVSVERAVLRLAGVSGADPDGIPWVNRLVDAVVADVGLGHGVAVPVFDALAREGLsDVTLLAQKA 99 
                     689********************************************************************************99688999**** PP

                     HHT---TTTS---.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.---SS-EEEEEE--S-HHHHHHHHHHHHHTT-SEEEE---TTGGG- CS
  Lys-AminoMut_A  95 akgeldltklpaa.eeeeikealeelvkkavekikenrkkreellkel.gekkkPylyvivatGniyedvvqakaaarqGadviavirstgqsll 187
                     a+g++++ ++p+   ++++++a +++v++++++i+++r++r++l++++ ++ ++P++y+ivatG+iyed+ qa+aaar+Gadviavirstgqsll
      KIR61980.1 100 AAGSVRF-AVPSGrAATAARRASRRAVAAGIRRIDRRRAERDRLVRRFgDPAQRPWIYLIVATGDIYEDIPQAQAAARAGADVIAVIRSTGQSLL 193
                     ******5.55555277888999999***********************77789****************************************** PP

                     SS---S--S--TTS----HHHHHHHHHHHHHHHHHHTS--EEEEE--STTHHHHHHHHHHHT-SEEE--SSHHHHHH-B-HHHHHHHHHHHHHHH CS
  Lys-AminoMut_A 188 dyvPyGatteGfgGtyatqenfrimrkaldevseelgryirltnyasGlCmpeiaalaalerldvllndalyGilfrdinmkrtlvdqyfsrvin 282
                     dyvP+Gat+eGf+Gtyatqenfr+mr+ald  s+elgry+rltnyasGlCmpe+a+la+lerld++lnd++yGilfrdin+ rt+vdq+fsr+++
      KIR61980.1 194 DYVPEGATREGFAGTYATQENFRLMRAALDSSSRELGRYVRLTNYASGLCMPEMATLAGLERLDMMLNDSMYGILFRDINPIRTFVDQRFSRQVH 288
                     *********************************************************************************************** PP

                     HHTT-EEE--THHHHSSS-TTTSHHHHHHHHHHHHHHHHHTT--GGGEE-EEE--S-TTSTTHHHHHHHHHHHHHHHSTTS--EEE---TT--S- CS
  Lys-AminoMut_A 283 alaGiiintGednylttadaveeahtvlasqlineqlaleaglkeeqlGlGhafeidPeledsfllelaqaqlareifpkaplkymPPtkfmtgd 377
                     a+aGiiintGednylttadav+eahtv++sql+ne +a+eagl+++qlGlGhafei+P++++s++lela+a+lare+fp+aplk+mPPtk+mtgd
      KIR61980.1 289 ARAGIIINTGEDNYLTTADAVDEAHTVTVSQLLNEFFAHEAGLADWQLGLGHAFEINPDVSESLRLELAHALLARELFPDAPLKWMPPTKHMTGD 383
                     *********************************************************************************************** PP

                     HHHHHHHHHHHHHHHHHHT-SEEE---TTTTTSS--HHHHHHHHHHHHHHHHHTTTHHHH----TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Lys-AminoMut_A 378 ifkghvqdalfnlvgiltgqgiqllGmlteaihtPflsdralalenakyvfnaakdlgeeiefkedgiiqkrakevlekavelleeieeegllka 472
                     +f+g+++d++fnlvg++tgqgi l+Gm+tea++tP+lsdr++al+n++yv+ aa  l+e++ ++++g+iq+ra++vl +av+lle+i +++ll+a
      KIR61980.1 384 VFRGNLLDGFFNLVGAMTGQGILLVGMMTEAVVTPWLSDRDIALQNVRYVLGAAGGLHEDFVPASGGFIQQRARRVLGEAVDLLERIGDQSLLTA 478
                     *********************************************************************************************** PP

                     HHTTTTTT----TT-SBTGGGEEE--TT---HHHH CS
  Lys-AminoMut_A 473 iekgtfadvkrpedgGkGldGvvekeeeylnPfle 507
                     i++gtf+ +krp+d GkGldGv+++e +y+nP++e
      KIR61980.1 479 IAEGTFGIMKRPADRGKGLDGVARHEGDYYNPATE 513
                     ********************************988 PP

>> OAM_alpha  D-ornithine 4,5-aminomutase alpha-subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.8e-10   1.6e-06      23      84 ..      13      76 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.8e-10
                HHHHHHHHHHHHHHHHHHHHEE-HHHHHHHHHHTT--HHHHHHH..HHHHHHTTGGGG-HHHHH CS
   OAM_alpha 23 erfWelaekivdPlielarkhtspsiersvLLrmGlssleakai..vekvlekgllgkGaGhvv 84
                 r  ela +  +P+++lar+ht+ s+er+vL   G+s  +   i  v++++++ + + G Gh v
  KIR61980.1 13 GRARELARRAGQPVVDLARSHTTVSVERAVLRLAGVSGADPDGIpwVNRLVDAVVADVGLGHGV 76
                5667999************************99****999887766999999999988888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 3190.73
//
Query:       KIR61981.1  [L=353]
Description: zinc-dependent alcohol dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2468.28
//
Query:       KIR61982.1  [L=468]
Description: lysine 2,3-aminomutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.025   14.0   0.0      0.054   12.9   0.0    1.5  1  AP_endonuc_2  Xylose isomerase-like TIM barrel
      0.028   14.8   0.0        0.1   13.0   0.0    1.8  1  Radical_SAM   Radical SAM superfamily


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     6e-06     0.054     109     138 ..     276     305 ..     272     323 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6e-06
                   HHHHHHHHHHHHHHHTSEEEEE--TTTTSS CS
  AP_endonuc_2 109 laeslneladyaekegvklalEtlagsgve 138
                   ++e+l+++a+ a+++gv la++t+ ++ ++
    KIR61982.1 276 VVEGLERVARTAARRGVNLAIHTHVNHAQS 305
                   79**********************988754 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.1e-05       0.1       5     156 ..     175     336 ..     172     368 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
                  SEESS--TTTSCCTT......HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGS..TTHHHHHHHHHHTC.CCTEEEEEEECSSCHG... CS
                  xxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx... RF
  Radical_SAM   5 rgCnlrCsfCarpet......vrregrgrslsveeileevkelkaekgvkevilgggeplly..pdfvellerlakla.vpgiritvetngtlpd... 90 
                    C++ C +C+r           +  +   ++v++  +++ +lka++gv+ v+++gg++     ++++ +l rl +++  +++r++  +  +lp    
   KIR61982.1 175 STCPQYCGHCTRMDLvgnstpAVDKLKLTLKPVDRYDAHITYLKAHPGVRDVVVSGGDVANVpwRNLESYLMRLLEIEtIRDVRLATKALMGLPQhwl 272
                  68***********99***9999999999****************999988777777777655443333333333333344444444444444444666 PP

                  ........HHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTS CS
                  ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  91 ........eeklerllelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGen 156
                          e+++++ +++    v+l +++  +   + l+ +      v +a +++ ++g+++v +  v+++G+n
   KIR61982.1 273 qpdvveglERVARTAARR---GVNLAIHTHVNH-AQSLT-P-----LVAKAAQTALDVGVRDVRNQGVLMRGVN 336
                  655533333333333333...344444444444.33334.3.....4455555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3379.41
//
Query:       KIR61983.1  [L=321]
Description: N-acetylmuramoyl-L-alanine amidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-11   45.3   0.8    1.8e-11   44.6   0.1    1.7  2  Amidase_2  N-acetylmuramoyl-L-alanine amidase


Domain annotation for each model (and alignments):
>> Amidase_2  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.1     1e-15   1.8e-11       8     124 ..      38     164 ..      34     165 .. 0.81
   2 ?   -1.8   0.1      0.23   4.1e+03      60      60 ..     231     231 ..     184     289 .. 0.51

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1e-15
                 EEEEEBSS.-HHHHHHHHHHSHHHHTTTS....S..-SEEE-SSSSEEESS-TTCEESSSSS.........EHCHHGEEEEEESSTTEEESCHHHHHHH CS
   Amidase_2   8 iviHhtagssaagalavaaaeyaastngs...ig..yhylidkdGtiyqlvdengrawHagd.........kggNdnsigIElvgngdgkeppteaqye 92 
                 +  Hhta++s+a+     + +   ++ng+   +g  ++ l+d  G +++l+  +gra Hag          ++gN+  ig+E+  ng  ++++t+aqye
  KIR61983.1  38 VLWHHTASTSSATN---PHPALGICINGRsdlPGplCQALVDYHG-VFHLI-SAGRANHAGTsggsgpipaGDGNTLMIGWEIDYNG-VSQEMTPAQYE 130
                 788***98644322...22223344666667755779********.99955.899********************************.*********** PP

                 HHHHHHHHHHHHHTEEEGGGEEEHHHH...TB-TT CS
   Amidase_2  93 alakLvaallkrygippdrrvvgHsdi...rktdP 124
                 a  + +aa+l+r g + +++  gH+++   +k dP
  KIR61983.1 131 ASLRATAAVLTRLGRD-ASHARGHRETsttGKIDP 164
                 *************977.55599**75555689988 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.23
                 S CS
   Amidase_2  60 w 60 
                 w
  KIR61983.1 231 W 231
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2380.83
//
Query:       KIR61984.1  [L=64]
Description: general stress protein CsbD [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-14   53.6   8.4    1.8e-14   53.4   8.4    1.1  1  CsbD      CsbD-like
     0.0091   16.6   4.8       0.01   16.4   4.8    1.1  1  DUF883    Bacterial protein of unknown function (DUF883)
  ------ inclusion threshold ------
      0.069   13.3   2.9      0.069   13.3   2.9    1.8  2  LEA_4     Late embryogenesis abundant protein


Domain annotation for each model (and alignments):
>> CsbD  CsbD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   8.4     3e-18   1.8e-14       1      52 [.       5      56 ..       5      57 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 3e-18
        CsbD  1 dkikgkaeqvkGkvKeaaGkaTgdekleaeGkadqlkGkaqqkygdakdaak 52
                dk+k+ka++++G++Ke +G++T++e+l+aeG  +q  ++a+q+++ +kda +
  KIR61984.1  5 DKAKNKAQELAGAAKERVGDMTDNERLRAEGATEQSDARARQAGEHVKDAGR 56
                8************************************************976 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   4.8   1.7e-06      0.01      17      68 ..       3      54 ..       1      61 [. 0.89

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.7e-06
      DUF883 17 llkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddy 68
                ++++a+++a+e a +++er+ ++ ++ r r++ a+e+  +ra++a e+++d+
  KIR61984.1  3 FTDKAKNKAQELAGAAKERVGDMTDNERLRAEGATEQSDARARQAGEHVKDA 54
                678899999*************************************999987 PP

>> LEA_4  Late embryogenesis abundant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.9   1.1e-05     0.069       1      24 [.       4      27 ..       4      28 .. 0.92
   2 ?   -0.7   0.1      0.25   1.5e+03      21      21 ..      49      49 ..      33      57 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
       LEA_4  1 kdyaaeKakeaKDataeKageyKD 24
                +d+a++Ka+e + a++e++g+ +D
  KIR61984.1  4 TDKAKNKAQELAGAAKERVGDMTD 27
                599*****************9998 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.25
       LEA_4 21 e 21
                e
  KIR61984.1 49 E 49
                2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 488.43
//
Query:       KIR61985.1  [L=203]
Description: phosphoglycerate mutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-45  155.8   3.1    1.2e-45  155.6   3.1    1.0  1  His_Phos_1      Histidine phosphatase superfamily (branch 1)
  ------ inclusion threshold ------
      0.018   14.9   0.4      0.049   13.5   0.4    1.7  1  Plasmid_stab_B  Plasmid stability protein


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   3.1   1.3e-49   1.2e-45       1     193 [.       4     187 ..       4     188 .. 0.98

  Alignments for each domain:
  == domain 1  score: 155.6 bits;  conditional E-value: 1.3e-49
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH..H CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidaiysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiaeeype 99 
                 ++LvRHGetew+a++r    td +Lt++G+++A+ la+ lag++++ +++S  +Ra +Tael++        +de+L E+++G++eg tta+i+ e+p 
  KIR61985.1   4 IVLVRHGETEWSASRRHTSYTDLELTDDGEREARGLAALLAGRRFALVLASRRRRALRTAELAGL---AVAAVDEDLAEWNYGRYEGVTTADIHTERPG 99 
                 79************************************************************998...5679*************************** PP

                 SHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS-EEEEEEEE CS
  His_Phos_1 100 eleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglpleelrrleldnaslsvlefdeggwrlvrlnd 193
                 +  +++  pa      gEs+++v aR++++l ++ a+ ++++v++V H++ +r+l ar++glp++    l+ld+a++s l +++g+++++r+n+
  KIR61985.1 100 WNIWTDGCPA------GESPAEVGARLDRVLARASAALADGDVALVGHAHSLRVLGARWIGLPPSGGGLLRLDTATVSALGHEHGRPVILRWNQ 187
                 ***9999999......****************************************************************************96 PP

>> Plasmid_stab_B  Plasmid stability protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   5.5e-06     0.049      28      52 ..      54      78 ..      47      82 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.5e-06
  Plasmid_stab_B 28 keRgrllRaaliaGlaLhkldprlp 52
                    + R r+lR+a +aGla++++d+ l+
      KIR61985.1 54 SRRRRALRTAELAGLAVAAVDEDLA 78
                    7899******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1549.27
//
Query:       KIR61986.1  [L=168]
Description: AsnC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-18   63.6   0.1    1.4e-17   62.9   0.1    1.4  1  HTH_24          Winged helix-turn-helix DNA-binding
    1.8e-17   62.9   0.5    4.6e-17   61.6   0.5    1.7  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    7.7e-13   48.2   0.0    1.3e-12   47.4   0.0    1.4  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    4.3e-06   26.5   1.7    4.9e-06   26.3   0.5    1.7  2  MarR_2          MarR family
      2e-05   24.6   0.8      2e-05   24.6   0.8    1.7  2  HTH_28          Helix-turn-helix domain
    2.5e-05   24.2   0.6    5.1e-05   23.3   0.1    1.7  2  HTH_20          Helix-turn-helix domain
    3.2e-05   23.8   1.0     0.0001   22.2   0.0    2.2  3  HTH_11          HTH domain
    3.2e-05   23.6   0.2    6.2e-05   22.7   0.2    1.5  1  HTH_IclR        IclR helix-turn-helix domain
    6.4e-05   22.8   0.0    0.00014   21.7   0.0    1.6  1  MarR            MarR family
    0.00044   20.0   0.4    0.00096   18.9   0.4    1.6  1  HTH_23          Homeodomain-like domain
    0.00083   19.0   0.5     0.0063   16.2   0.1    2.2  2  Sigma70_r4_2    Sigma-70, region 4
    0.00091   19.2   0.4     0.0021   18.0   0.1    1.7  2  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0016   18.0   0.0     0.0026   17.3   0.0    1.3  1  HTH_47          winged helix-turn-helix
     0.0072   16.2   0.1       0.02   14.8   0.1    1.8  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0072   16.2   0.0      0.012   15.5   0.0    1.3  1  HTH_5           Bacterial regulatory protein, arsR family
     0.0078   16.3   0.0      0.013   15.6   0.0    1.3  1  HTH_9           RNA polymerase III subunit RPC82 helix-turn-h
     0.0087   15.9   0.1      0.016   15.1   0.1    1.4  1  TrmB            Sugar-specific transcriptional regulator TrmB
  ------ inclusion threshold ------
      0.011   15.5   0.0       0.02   14.6   0.0    1.5  1  LexA_DNA_bind   LexA DNA binding domain
      0.011   15.5   0.0       0.02   14.7   0.0    1.4  1  HTH_10          HTH DNA binding domain
      0.015   15.4   0.0      0.022   14.8   0.0    1.2  1  HTH_Mga         M protein trans-acting positive regulator (MG
      0.021   14.3   0.2      0.039   13.5   0.2    1.5  1  Sigma70_r4      Sigma-70, region 4
      0.022   14.3   0.1      0.036   13.6   0.1    1.3  1  HTH_CodY        CodY helix-turn-helix domain
      0.036   13.5   0.1      0.063   12.7   0.1    1.5  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
       0.05   13.9   0.1       0.18   12.2   0.0    1.8  2  Rrf2            Transcriptional regulator
      0.069   13.4   0.0       0.11   12.7   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.21   11.5   0.0       0.34   10.9   0.0    1.3  1  HTH_36          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.1   2.1e-20   1.4e-17       1      48 []       1      48 [.       1      48 [. 0.98

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 2.1e-20
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                + e+dr+I  +L +++r+s+++LAe++glS+s+v++r++rLe+ G+I+
  KIR61986.1  1 MEEIDRAIVAALTADGRLSYTDLAEKVGLSVSAVHQRVRRLEQRGVIR 48
                679********************************************7 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.5   6.6e-20   4.6e-17       1      42 []       1      42 [.       1      42 [. 0.98

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 6.6e-20
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   + eiDr+I++aL +d+R+sy++LAe+vGlS s+v++RvrrLe
     KIR61986.1  1 MEEIDRAIVAALTADGRLSYTDLAEKVGLSVSAVHQRVRRLE 42
                   779**************************************8 PP

>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0     2e-15   1.3e-12      10      75 .]      74     137 ..      67     137 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 2e-15
                     TTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEEE CS
  AsnC_trans_reg  10 peqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivlet 75 
                     p q +++ e+la lpe+ +cy+v+G++ yll v+v++ ++ler+l+e +++  +v  t+t++vl+t
      KIR61986.1  74 PSQPDDAPERLAHLPEIDSCYSVAGEDFYLLLVRVASPADLERLLQE-IRTAANV-TTRTTVVLST 137
                     44689999***************************************.*****99.89999**986 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.5   7.2e-09   4.9e-06       9      52 ..       7      48 ..       1      54 [. 0.86
   2 ?   -2.3   0.0       6.4   4.4e+03      24      29 ..     111     116 ..     104     129 .. 0.61

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 7.2e-09
                HHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2  9 rvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52
                 + aaL + ++  l+ ++la++ gls sav+++++rL+++G ++
  KIR61986.1  7 AIVAALTADGR--LSYTDLAEKVGLSVSAVHQRVRRLEQRGVIR 48
                55667766666..****************************997 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 6.4
                 HHHHHH CS
      MarR_2  24 vgelar 29 
                 +++l+r
  KIR61986.1 111 PADLER 116
                 344444 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.8   2.9e-08     2e-05       2      41 ..       6      46 ..       5      53 .. 0.90
   2 ?   -2.3   0.1       7.4   5.1e+03      10      22 ..     146     159 ..     144     160 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.9e-08
      HTH_28  2 RleiikllaaGh.svreaArelgisrrtvyrWikryeegGi 41
                R+ +  l a+G+ s++++A+++g+s + v + ++r+e+ G+
  KIR61986.1  6 RAIVAALTADGRlSYTDLAEKVGLSVSAVHQRVRRLEQRGV 46
                899999999******************************95 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.4
      HTH_28  10 aaGh.svreaArel 22 
                 ++G+ s+r+++r+ 
  KIR61986.1 146 ISGEaSARARSRAA 159
                 67888888887765 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   7.4e-08   5.1e-05      13      56 ..       6      49 ..       2      52 .. 0.95
   2 ?   -2.7   0.0       9.1   6.3e+03      28      35 ..     112     119 ..     106     132 .. 0.53

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 7.4e-08
                HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 13 rrilraLaraegltaselaerldlskntlsyHLrvLeeagLvev 56
                r+i +aL+ ++ l+ ++lae ++ls + +++++r Le+ g +++
  KIR61986.1  6 RAIVAALTADGRLSYTDLAEKVGLSVSAVHQRVRRLEQRGVIRG 49
                89**************************************9986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 9.1
                 HHHHHHHT CS
      HTH_20  28 selaerld 35 
                 ++l ++l+
  KIR61986.1 112 ADLERLLQ 119
                 44444442 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.5e-07    0.0001       4      44 ..       7      46 ..       5      54 .. 0.91
   2 ?   -1.4   0.1       3.4   2.3e+03      19      32 ..     119     133 ..     117     134 .. 0.64
   3 ?   -1.6   0.0       3.9   2.7e+03      10      19 ..     139     149 ..     130     150 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.5e-07
      HTH_11  4 qilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                +i+  L  a+g +s  +LAe+ ++S ++v++++++Le  gv
  KIR61986.1  7 AIVAAL-TADGRLSYTDLAEKVGLSVSAVHQRVRRLEQRGV 46
                688889.9999**************************9984 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.4
      HTH_11  19 eeLAeeLnv.Srrtv 32 
                 +e+    nv +r+tv
  KIR61986.1 119 QEIRTAANVtTRTTV 133
                 566667789555555 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3.9
      HTH_11  10 leargp.isge 19 
                 +e+r+p isge
  KIR61986.1 139 YENRPPkISGE 149
                 68999999997 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.2     9e-08   6.2e-05      13      49 ..      13      48 ..       7      49 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 9e-08
                CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR 13 aeapqeltlselArrtglpkStvhRlLqtLvelGyve 49
                + a+++l+ ++lA++ gl+ S+vh  ++ L+++G ++
  KIR61986.1 13 T-ADGRLSYTDLAEKVGLSVSAVHQRVRRLEQRGVIR 48
                3.56669***************************886 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.1e-07   0.00014      14      48 ..      14      48 ..       7      51 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.1e-07
                HSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR 14 eqgplsvseLakklgvskstvtrvldrLekkGlie 48
                  g ls ++La+k+g+s s+v   ++rLe++G i+
  KIR61986.1 14 ADGRLSYTDLAEKVGLSVSAVHQRVRRLEQRGVIR 48
                5688999*************************997 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.4   1.4e-06   0.00096       3      45 ..       2      45 ..       1      48 [. 0.92

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.4e-06
      HTH_23  3 sereRlrillllae.GlsvreIAreLgvsrrTvyrwlkryreeG 45
                +e++R+ ++ l a+ +ls+++ A++ g s + v + ++r ++ G
  KIR61986.1  2 EEIDRAIVAALTADgRLSYTDLAEKVGLSVSAVHQRVRRLEQRG 45
                6899******************************9999987777 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   9.1e-06    0.0063      25      49 ..      16      40 ..       1      44 [. 0.77
   2 ?    0.6   0.0      0.67   4.6e+02       6      16 ..      82      92 ..      79      93 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.1e-06
                  S---HHHHHHHHT--HHHHHHHHHH CS
  Sigma70_r4_2 25 eglsykEIAellgisegtVksrlsR 49
                    lsy + Ae+ g+s+++V +r++R
    KIR61986.1 16 GRLSYTDLAEKVGLSVSAVHQRVRR 40
                  459********************99 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.67
                  HHHTTS-HHHH CS
  Sigma70_r4_2  6 ealaeLperqr 16
                  e la+Lpe+++
    KIR61986.1 82 ERLAHLPEIDS 92
                  679*****986 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   3.1e-06    0.0021      21      53 ..      17      49 ..       4      61 .. 0.85
   2 ?   -2.2   0.0       6.3   4.3e+03      38      53 ..     114     129 ..     109     136 .. 0.55

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.1e-06
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglisr 53
                +l+ ++lA+ +Gl+ + v +  ++L+++g+i+ 
  KIR61986.1 17 RLSYTDLAEKVGLSVSAVHQRVRRLEQRGVIRG 49
                799****************************93 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.3
                 HHHHHHHHHHTTSEEE CS
   HTH_Crp_2  38 vsrilseLkreglisr 53 
                 + r+l+e + +  +++
  KIR61986.1 114 LERLLQEIRTAANVTT 129
                 5566666665554444 PP

>> HTH_47  winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.8e-06    0.0026      43      77 ..      14      48 ..       3      49 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.8e-06
                -EEEEEHHHHHHHHT--HHHHHHHHHHHHHTT-EE CS
      HTH_47 43 aDGkrsLldiAeriglpfdrvaaiaraLaeaglla 77
                aDG+ s  d+Ae++gl++ +v + +r+L++ g+++
  KIR61986.1 14 ADGRLSYTDLAEKVGLSVSAVHQRVRRLEQRGVIR 48
                9********************************97 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   2.9e-05      0.02      17      40 ..      21      44 ..       8      45 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.9e-05
                HHHHHHHTS-HHHHHHHHHHHHHH CS
       HTH_1 17 trAAeeLglsqpavsrqikrLEee 40
                t  Ae++gls +av ++++rLE++
  KIR61986.1 21 TDLAEKVGLSVSAVHQRVRRLEQR 44
                5559******************95 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.7e-05     0.012      10      45 ..      11      47 ..       6      48 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.7e-05
                HHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5 10 lLae.gelcvcelaeelglsqstvShHLkkLreaGLV 45
                +L   g l+ ++lae++gls s+v +  ++L++ G++
  KIR61986.1 11 ALTAdGRLSYTDLAEKVGLSVSAVHQRVRRLEQRGVI 47
                5544489999***********************9987 PP

>> HTH_9  RNA polymerase III subunit RPC82 helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.8e-05     0.013      16      53 ..       6      43 ..       2      48 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.8e-05
                HHHHHHHHHHSSBEHHHHHHHHSSTHHHHHHHHHHHHH CS
       HTH_9 16 akVvetLlrkgrltlrelvkktkLsldqVkksLvvLiq 53
                +++v  L + grl+ ++l++k++Ls + V++ +  L q
  KIR61986.1  6 RAIVAALTADGRLSYTDLAEKVGLSVSAVHQRVRRLEQ 43
                789**************************997766655 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   2.3e-05     0.016      15      53 ..      10      48 ..       2      61 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.3e-05
                HHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEE CS
        TrmB 15 laLlklgpatadeiaeelgvprskvYevLrsLedkGlVe 53
                +aL + g+++ +++ae++g++ s v + +r+Le++G+++
  KIR61986.1 10 AALTADGRLSYTDLAEKVGLSVSAVHQRVRRLEQRGVIR 48
                577889999***************************986 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0     3e-05      0.02      28      57 ..      20      48 ..       6      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3e-05
                   HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE CS
  LexA_DNA_bind 28 ireiaralglkSpsaveehLkaLerKGyie 57
                     ++a+++gl+  sav+++ ++Le++G+i+
     KIR61986.1 20 YTDLAEKVGLS-VSAVHQRVRRLEQRGVIR 48
                   56899*****7.9****************8 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.8e-05      0.02      24      49 ..      18      43 ..      15      46 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.8e-05
      HTH_10 24 vtlkeLAkelGIskstlsehLrkaes 49
                 +  +LA++ G+s s++++++r+ e+
  KIR61986.1 18 LSYTDLAEKVGLSVSAVHQRVRRLEQ 43
                5778*******************997 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.2e-05     0.022      10      44 ..       8      41 ..       5      43 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.2e-05
     HTH_Mga 10 LlelLteneksltldelakeLglseltlqsdiseL 44
                ++++Lt  +++l++++la++ gls +++ ++++ L
  KIR61986.1  8 IVAALTA-DGRLSYTDLAEKVGLSVSAVHQRVRRL 41
                7899***.*******************99998766 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   5.6e-05     0.039      12      43 ..       8      40 ..       1      44 [. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.6e-05
                HHHHHH.TTT--HHHHHHHHTS-HHHHHHHHHH CS
  Sigma70_r4 12 vlelrf.geglTleEIgerlgiSrerVrqiekr 43
                ++     +  l++ +++e+ g+S ++V+q+ +r
  KIR61986.1  8 IVAALTaDGRLSYTDLAEKVGLSVSAVHQRVRR 40
                55444457789*******************998 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   5.2e-05     0.036       2      35 ..      15      48 ..      14      52 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.2e-05
    HTH_CodY  2 eGrLtaskiaDriGitrsvivnaLrkLesaGiie 35
                +GrL    +a+++G+  s +   +r+Le  G+i 
  KIR61986.1 15 DGRLSYTDLAEKVGLSVSAVHQRVRRLEQRGVIR 48
                79******************************95 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   9.2e-05     0.063      17      51 ..       5      41 ..       2      42 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.2e-05
  HTH_Tnp_ISL3 17 eayilellles..rsvkavArqlgvSwtTVwrildry 51
                  +++i+++l+ +   s ++ A+ +g+S + V+ +++r+
    KIR61986.1  5 DRAIVAALTADgrLSYTDLAEKVGLSVSAVHQRVRRL 41
                  67888888888899*******************9986 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00026      0.18      19      56 ..      11      48 ..       7      51 .. 0.85
   2 ?   -1.4   0.0       4.3     3e+03      39      58 ..     111     130 ..     108     137 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00026
                HSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        Rrf2 19 keeeeepvsseeiaerqnispsylekilakLrkaglvk 56
                +   ++ +s +++ae++++s s + + +++L++ g+++
  KIR61986.1 11 ALTADGRLSYTDLAEKVGLSVSAVHQRVRRLEQRGVIR 48
                44445559****************************97 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 4.3
                 HHHHHHHHHHHHHTTSEEEE CS
        Rrf2  39 psylekilakLrkaglvksv 58 
                 p  le++l++ r a  v+++
  KIR61986.1 111 PADLERLLQEIRTAANVTTR 130
                 66688888888888777665 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00016      0.11      20      50 ..      15      45 ..       1      50 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00016
                    HSSB-HHHHHHHHTS-HHHHHHHHHHHHHTT CS
  Fe_dep_repress 20 kkvvktkdlaerLnvspssVsemlkkLekdG 50
                     +  + +dlae  + s s V + +++Le+ G
      KIR61986.1 15 DGRLSYTDLAEKVGLSVSAVHQRVRRLEQRG 45
                    5667889*********************999 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00049      0.34      27      55 .]      19      47 ..      12      47 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00049
      HTH_36 27 sqetlakrlglsknTvsraikeLeqlGyi 55
                s+ +la++ gls++ v   ++ Leq G i
  KIR61986.1 19 SYTDLAEKVGLSVSAVHQRVRRLEQRGVI 47
                89************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1230.68
//
Query:       KIR61987.1  [L=380]
Description: acyl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-45  154.3   6.9    4.4e-45  153.6   6.9    1.4  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    5.3e-24   84.2   0.0    1.1e-23   83.2   0.0    1.6  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    2.3e-22   79.7   7.8    4.8e-22   78.7   7.8    1.6  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
      4e-20   72.6   0.1      1e-19   71.3   0.1    1.7  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.6   6.9   9.7e-49   4.4e-45       1     149 [.     229     377 ..     229     378 .. 0.99

  Alignments for each domain:
  == domain 1  score: 153.6 bits;  conditional E-value: 9.7e-49
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpdraeasmaKlfas 96 
                    g Gf++am++l+ +Rl++aa a+gla++al+ a+ yar+r++fg++++d+q + + la+ a+++ aar+l ++aa++ dag+p + ea+ aKlfa+
     KIR61987.1 229 GAGFTIAMSALDSGRLGIAACAVGLAQAALDYAVGYARERRQFGRTIVDFQGLGFTLADHATQISAARALMLAAARLRDAGRPYSIEAAKAKLFAT 324
                    68********************************************************************************************** PP

                    HHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHHH CS
  Acyl-CoA_dh_1  97 elaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarrl 149
                    ++a++v+ +a+q+lGgaGy +++pver++r+a+vl+i eGt++iqr++i+r+l
     KIR61987.1 325 DVAMRVTIDAVQVLGGAGYVADHPVERYLREAKVLQIVEGTNQIQRLVISRAL 377
                    **************************************************987 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   2.5e-27   1.1e-23       1      96 [.     123     216 ..     123     217 .. 0.95

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 2.5e-27
                    EEE---SS-SS-GGG---EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE. CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvkttaaerdggeyvlnGeKiwitnaaiatlalvlartekpdrarglslflvprdapgvsvrrieeklGlrglptgelvfed 96 
                    a++l+Epq+Gsd+a+++t  a rdg+ yv++G+K wit+a+ a+++ +++rt++p   +g+s++l +rd+pg+ ++  e+++Gl+  p +++ f+d
     KIR61987.1 123 AYCLSEPQGGSDAAALTT-RAVRDGEAYVVTGTKAWITHARVADFYNIFCRTGGPG-PKGISCLLADRDTPGIVPQAAERTMGLHASPVAQVAFDD 216
                    79****************.55566667************************99999.*************************************98 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   7.8   1.1e-25   4.8e-22       1     133 [.     244     366 ..     244     367 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 1.1e-25
                    .HHHHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   1 lgiaavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaia 96 
                    lgiaa a+G+A+aal+ +v +arer +  +g+++ d++ + ++la++a+++ AAral+++aa+     ++ag+++      ea+ a+++a++ a +
     KIR61987.1 244 LGIAACAVGLAQAALDYAVGYARERRQ--FGRTIVDFQGLGFTLADHATQISAARALMLAAARL----RDAGRPY----SIEAAKAKLFATDVAMR 329
                    689************************..***********************************....******9....999************** PP

                    HHHHHHHHCGGGGGBTT-HHHHHHHHHHHHCTSGGG- CS
  Acyl-CoA_dh_2  97 avdalfeaaGgsalrkesplqRlwRDahaaaaHaaln 133
                    ++ +++++ Gg ++ +++p++R++R+a+++++ +++n
     KIR61987.1 330 VTIDAVQVLGGAGYVADHPVERYLREAKVLQIVEGTN 366
                    *****************************99876665 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.1   2.2e-23     1e-19       1     113 []       9     119 ..       9     119 .. 0.95

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 2.2e-23
                    THHHHHHHHHHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHH CS
  Acyl-CoA_dh_N   1 teeqealrdtvrefaeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailrf 96 
                    t+e ++l d + e+a++elap+aa  + ++efpre+++ l+++Gllg+++ ee+gGa   y  ++ v+e la  ++++a +++vh+ l ++++++f
     KIR61987.1   9 TDEAHDLLDLATELADRELAPRAAGFESRAEFPREVLRTLGRAGLLGLPYAEEHGGAAQPYEVYLQVLEVLASRWLAVAEAVSVHT-LSCYPLAQF 103
                    799************************999****************************99*****************999*****9.66699**** PP

                    S-HHHHHHHHHHHHTTS CS
  Acyl-CoA_dh_N  97 GteeqkrryLpklasge 113
                    Gt++q+ + Lp+++ ge
     KIR61987.1 104 GTDAQR-KLLPDMIGGE 119
                    ****97.699*999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2745.37
//
Query:       KIR61988.1  [L=74]
Description: hypothetical protein TK50_31695 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0013   19.0   7.7     0.0019   18.4   7.7    1.4  1  DUF3040          Protein of unknown function (DUF3040)
     0.0014   19.0   3.9     0.0016   18.8   3.9    1.0  1  YwiC             YwiC-like protein
     0.0084   15.8   3.4     0.0092   15.6   3.4    1.0  1  DUF3483          Domain of unknown function (DUF3483)
  ------ inclusion threshold ------
      0.028   14.3   1.1       0.03   14.2   1.1    1.0  1  FA_desaturase    Fatty acid desaturase
      0.039   13.3   0.8      0.047   13.0   0.8    1.0  1  DUF4191          Domain of unknown function (DUF4191)
       0.16   10.0   0.1       0.16    9.9   0.1    1.0  1  IgaA             Intracellular growth attenuator protein IgaA
       0.24   11.9   5.8        2.7    8.5   0.4    2.0  2  DUF3357          Domain of unknown function (DUF3357)
       0.94    9.6  11.9        1.3    9.1  11.9    1.3  1  DUF2892          Protein of unknown function (DUF2892)
       0.94    9.0   2.6        1.6    8.2   2.6    1.5  1  ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family
          1    9.8   7.6        1.4    9.4   7.6    1.2  1  PhoR             Phosphate regulon sensor protein PhoR


Domain annotation for each model (and alignments):
>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   7.7   1.1e-06    0.0019      32      82 ..       4      52 ..       1      62 [. 0.69

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.1e-06
     DUF3040 32 gaararrrslrrlavlavllfvaGllllvlGvaaaavvlgvvGfvvmlagv 82
                ++ r +rr  rr +++a +l+vaGl+ll +G+++a+ +l+ + ++v+l+++
  KIR61988.1  4 ERERGARR--RRGLLWAGILAVAGLVLLAVGLTVANGALAWLEAAVALVLL 52
                34444444..7779*****************66565466666555555544 PP

>> YwiC  YwiC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   3.9   8.8e-07    0.0016      52     106 ..       9      63 ..       3      71 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 8.8e-07
        YwiC  52 rrrarylkplliYgavallllllalllqpallwwallflplvavavyeakrkreR 106
                 +rr+r l ++ i +++ l+ll++ l +++  l+w+ ++++lv++ + +a ++  R
  KIR61988.1   9 ARRRRGLLWAGILAVAGLVLLAVGLTVANGALAWLEAAVALVLLVASYAVQRLAR 63 
                 68999999******99999999999999997777777777776666666665544 PP

>> DUF3483  Domain of unknown function (DUF3483)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   3.4   5.1e-06    0.0092      70     114 ..      18      64 ..       4      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.1e-06
     DUF3483  70 GGlvaalaLvllayglalasasldwlllaaalvmlvGallvak..RR 114
                  G++a + Lvlla+gl++a+ +l+wl +a+alv lv ++ v +  RR
  KIR61988.1  18 AGILAVAGLVLLAVGLTVANGALAWLEAAVALVLLVASYAVQRlaRR 64 
                 6899999*******************************999752255 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.1   1.7e-05      0.03     130     187 ..       9      72 ..       2      74 .] 0.51

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.7e-05
  FA_desaturase 130 srrrk.wrllawlllllawlglwlalllllglall..lwlvplllllfllalvl...nyveHyg 187
                     rrr+   + ++l+++  +l++++++++ ++la+l  +++++ll++  ++++++   +++ H+g
     KIR61988.1   9 ARRRRgLLWAGILAVAGLVLLAVGLTVANGALAWLeaAVALVLLVASYAVQRLArreTLYRHAG 72 
                    3344424444444444444666666666666666688444444444444444434668888887 PP

>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.8   2.6e-05     0.047      23      80 ..      13      69 ..       7      73 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
     DUF4191 23 kkllwlllaaflvvvvvfvvlglllgslilllilgillgllvalivltrraekaayaq 80
                + llw+ ++a+ + v+++v l+++ ++ + +l  +++l llva +  +r a++ +  +
  KIR61988.1 13 RGLLWAGILAVAGLVLLAVGLTVA-NGALAWLEAAVALVLLVASYAVQRLARRETLYR 69
                456666666666666666666666.5799********************999876544 PP

>> IgaA  Intracellular growth attenuator protein IgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   9.2e-05      0.16     199     250 ..      10      62 ..       3      70 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 9.2e-05
                 XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IgaA 199 srseg.lreallivlallllflallsPavllpWlvlaaalllavglwlllrpl 250
                 +r +g l+ ++l v++l+ll + l++ +  l Wl +a al+l v+ + + r  
  KIR61988.1  10 RRRRGlLWAGILAVAGLVLLAVGLTVANGALAWLEAAVALVLLVASYAVQRLA 62 
                 5556625778888999******************9888877777777665544 PP

>> DUF3357  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.4    0.0015       2.7      15      43 ..       7      36 ..       2      39 .. 0.73
   2 ?    7.0   1.0    0.0045       8.1      25      50 ..      38      64 ..      34      73 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0015
     DUF3357 15 aaararr.pllaavliasalvvlvvlvala 43
                 +ar+rr  l+a +l++++lv+l+v +++a
  KIR61988.1  7 RGARRRRgLLWAGILAVAGLVLLAVGLTVA 36
                455666658899999*******99976554 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0045
     DUF3357 25 aavliasalvvlvvlvalagv.rlagq 50
                 a++++ a+v+lv+lva + v rla +
  KIR61988.1 38 GALAWLEAAVALVLLVASYAVqRLARR 64
                68999999*****99999887444444 PP

>> DUF2892  Protein of unknown function (DUF2892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  11.9   0.00072       1.3      13      47 ..      21      55 ..      14      57 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00072
     DUF2892 13 rivvGlvllllallglsggwgwllglvGavllltg 47
                 +v+Glvll+++l+   g+ +wl ++v++vll+++
  KIR61988.1 21 LAVAGLVLLAVGLTVANGALAWLEAAVALVLLVAS 55
                589*************9999************975 PP

>> ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.6   0.00091       1.6      14      32 ..      11      29 ..      10      35 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00091
                     HHHHHHHHHHHHHHHHHHH CS
  ATP1G1_PLM_MAT8 14 rlgGLifAglLfivGilii 32
                     r  GL+ Ag+L ++G++++
       KIR61988.1 11 RRRGLLWAGILAVAGLVLL 29
                     668************9987 PP

>> PhoR  Phosphate regulon sensor protein PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   7.6   0.00077       1.4       6      51 ..      20      64 ..      15      72 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00077
        PhoR  6 llrlallllaallvgllvgalaallllalllllawhlyqllrLsrW 51
                +l +a l+l+a+ + ++ gala+l + a++l+l+   y ++rL r 
  KIR61988.1 20 ILAVAGLVLLAVGLTVANGALAWLEA-AVALVLLVASYAVQRLARR 64
                55666777777677777777777666.5556666667778888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       875  (0.0488036); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 526.79
//
Query:       KIR61989.1  [L=306]
Description: 5'-3' exonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-44  151.8   0.0    1.7e-44  151.5   0.0    1.1  1  5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like do
    5.1e-19   68.7   0.0    7.9e-19   68.1   0.0    1.3  1  5_3_exonuc    5'-3' exonuclease, C-terminal SAM fold
  ------ inclusion threshold ------
      0.021   14.9   0.3       0.25   11.5   0.0    2.2  2  HHH_2         Helix-hairpin-helix motif
      0.049   13.5   0.1       0.15   12.0   0.1    1.9  1  HHH           Helix-hairpin-helix motif
      0.071   13.7   0.0       0.19   12.4   0.0    1.7  1  HHH_5         Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> 5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.5   0.0   4.8e-48   1.7e-44       2     159 .]       7     180 ..       6     180 .. 0.93

  Alignments for each domain:
  == domain 1  score: 151.5 bits;  conditional E-value: 4.8e-48
  5_3_exonuc_N   2 llLiDgsslifRayyal....lttsdgeptnavygflnmllklleeekpthlavvfDa.kkktfRhelypeYKanR......eetpeelkeqlplik 87 
                   +lLiD+ sl+fRay+++     +++dg p+nav+gfl+ml++l+++++p+++++++D+  ++ +R +l+p+YKa+R      ee+p++l +q+p+i 
    KIR61989.1   7 ILLIDAPSLYFRAYFGVpesaARATDGSPVNAVRGFLDMLTTLVRTRRPDRMVCALDHdWRPDWRVALLPSYKAHRvaaeggEEVPDTLGPQVPVIL 103
                   79**************999988899************************99******84599*********************************** PP

  5_3_exonuc_N  88 evlealgikvlevegyEADDvigtlakraeeegvvivsgDkDllQlvedn..vrvld....vkkeelldeeevaekyg 159
                   +vl+a+gi+ + + gyEADDv+gtl+ ++ +   ++vsgD+Dl+Qlv+d   vr+l+    v+k e +d+++v+++yg
    KIR61989.1 104 DVLAAIGITAVGATGYEADDVLGTLSVTQPAP-AEVVSGDRDLFQLVDDArgVRLLYvgrgVAKLEDCDDAAVRARYG 180
                   **************************996654.89************87457****9988766655699999999997 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   2.2e-22   7.9e-19       1      85 [.     181     268 ..     181     280 .. 0.87

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 2.2e-22
  5_3_exonuc   1 vkPeqiidlkaLvGDssDnipGvpgiGektAakLlkeygsleeilenldelke...kklkekLeenkeearlskkLatiktdvplele 85 
                 v++++++d++aL+GD+sD +pGvpg+GektAa+L+ +yg +++il++ld+  +   + l+++L ++++++ ++ +++++  dvpl+  
  KIR61989.1 181 VPADRYADFAALRGDPSDGLPGVPGVGEKTAARLVDRYGGVAGILAALDDPGSgfaPGLRARLDAARDYLAVAPTVVRVALDVPLSEL 268
                 67899*******************************************9532234467**************************9844 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.15   5.5e+02       2      14 ..     105     117 ..     104     118 .. 0.87
   2 ?   11.5   0.0   6.9e-05      0.25       7      29 ..     202     224 ..     199     229 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.15
       HHH_2   2 llfaLGIrhVGek 14 
                 +l a+GI  VG++
  KIR61989.1 105 VLAAIGITAVGAT 117
                 7899*******86 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6.9e-05
       HHH_2   7 GIrhVGektAklLakrFksldaL 29 
                 G++ VGektA  L+ r++ +  +
  KIR61989.1 202 GVPGVGEKTAARLVDRYGGVAGI 224
                 99***************987666 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   4.2e-05      0.15      16      27 ..     203     214 ..     198     216 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.2e-05
                 STT-SHHHHHHH CS
         HHH  16 lPGVGpktAeaI 27 
                 +PGVG+ktA + 
  KIR61989.1 203 VPGVGEKTAARL 214
                 9********876 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.3e-05      0.19      35      53 ..     198     216 ..     177     227 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.3e-05
                 HHHHTSTTS-HHHHHHHHH CS
       HHH_5  35 eeLakipGiGkktAeriil 53 
                 + L  +pG+G+ktA r+++
  KIR61989.1 198 DGLPGVPGVGEKTAARLVD 216
                 4477789999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2325.30
//
Query:       KIR61990.1  [L=296]
Description: signal protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-39  134.2  45.4    4.9e-16   58.6  13.9    4.3  4  MHYT      Bacterial signalling protein N terminal repeat


Domain annotation for each model (and alignments):
>> MHYT  Bacterial signalling protein N terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1   0.00053       9.5      21      51 ..       7      37 ..       2      44 .. 0.85
   2 !   54.4   8.2   5.9e-19   1.1e-14       1      56 [.      57     113 ..      57     116 .. 0.93
   3 !   58.6  13.9   2.7e-20   4.9e-16       1      57 [.     121     177 ..     121     179 .. 0.95
   4 !   29.7   3.0     3e-11   5.4e-07       1      46 [.     183     234 ..     183     248 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00053
        MHYT 21 igydpaltalSlliaivasvlAlalavrrrd 51
                 +y + + alS +++++ s+l+l+ a+r r 
  KIR61990.1  7 FEYGWITPALSYALSVLGSFLGLVCAARIRV 37
                678888999***************9988765 PP

  == domain 2  score: 54.4 bits;  conditional E-value: 5.9e-19
        MHYT   1 GlgIwsMHYtGMaAftlpg.pigydpaltalSlliaivasvlAlalavrrrdtrlrl 56 
                 G++IwsMH+++M++f ++g +i+yd+++t++S lia+va++++la++   r ++lr+
  KIR61990.1  57 GTAIWSMHFMAMLGFAVEGtRIRYDVPITVVSALIAVVAVGIGLAIVGTGRVSALRI 113
                 99****************88**************************99888888776 PP

  == domain 3  score: 58.6 bits;  conditional E-value: 2.7e-20
        MHYT   1 GlgIwsMHYtGMaAftlpgpigydpaltalSlliaivasvlAlalavrrrdtrlrll 57 
                 G g+++MHYtGMaA++l+g +gyd   +alS++ia+va+++Al+lav +r+++++++
  KIR61990.1 121 GAGVAAMHYTGMAAMRLGGSLGYDGVRVALSVAIAVVAATVALWLAVTVRRALAVAA 177
                 89***********************************************99888776 PP

  == domain 4  score: 29.7 bits;  conditional E-value: 3e-11
        MHYT   1 GlgIwsMHYtGMaAftlpg.pigydpaltalS.....lliaivasvlAlala 46 
                 G+++ +MH+tGM A+++++ +++ ++++ + S     +++a++++v++l+ a
  KIR61990.1 183 GVAVNGMHFTGMSALSVHLhEQQGEITGAGFStllvpIVLAVIFVVVGLVYA 234
                 99***************85566666666666654434677777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1083  (0.0604049); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2123.62
//
Query:       KIR61991.1  [L=933]
Description: RNA helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-38  131.6   0.0    4.2e-38  130.6   0.0    1.5  1  DSHCT           DSHCT (NUC185) domain
    1.6e-17   63.9   0.0    2.6e-17   63.1   0.0    1.3  1  DEAD            DEAD/DEAH box helicase
    3.6e-08   33.7   0.0    3.7e-05   23.8   0.0    2.2  2  rRNA_proc-arch  rRNA-processing arch domain
    1.6e-06   28.2   0.0    2.6e-06   27.6   0.0    1.3  1  ResIII          Type III restriction enzyme, res subunit
     0.0014   18.9   0.0     0.0036   17.6   0.0    1.6  1  AAA_22          AAA domain
     0.0017   18.6   0.0     0.0036   17.6   0.0    1.5  1  Helicase_C      Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> DSHCT  DSHCT (NUC185) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.0   1.4e-41   4.2e-38       2     162 ..     759     927 ..     758     929 .. 0.89

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 1.4e-41
       DSHCT   2 ntvtlkGrvaaeirsedeLlltellfsgvlddlepeelaAllsalvfeekredeeekepkl.seeleealeel.........keiaeriakvsvesrl. 89 
                 + vt++Gr++ +i +e +Ll++e+l++gv+d+l+p+elaA++s++vfe +r+ +e++  +l ++ +++a++e          +e+a+ +a v   +r+ 
  KIR61991.1 759 GAVTDAGRMLGRIWTEADLLVAECLRRGVWDGLSPAELAAAVSVVVFEARRDADERA--SLpRGPVADAVDETlhlwsgieaDEAARGLA-V---TREp 851
                 579***********************************************9999887..7778888888844334456656699999999.7...5666 PP

       DSHCT  90 dlglvevvyaWakgasfaellek.....tdldeGdiVRllrrleellrqlakaakvigneeLkkkaeeaielikRdiV 162
                 dlg+++ +y+Wa+g+ +a++l++      ++ +Gd+VR++r++ +ll q+a+   +  ++eL+++a++ai++++R++ 
  KIR61991.1 852 DLGFAWPIYRWARGEALAKVLASghqldGEMPAGDFVRWARQVVDLLGQVADSGGA--STELRATARQAIAAVNRGVL 927
                 ***********************6555559*************************9..******************95 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   8.8e-21   2.6e-17       2     170 ..      37     200 ..      36     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 8.8e-21
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS............TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet............kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaar 88 
                 d Q+ea++++ +g  vlv+a+TG+GKT +  ++v  ++                  t+ k+++ +P ++L +q +++l  +     ++ + +++g++a 
  KIR61991.1  37 DFQREACQALERGSGVLVCAPTGAGKTVVGEFAVHLALR-GaparpaaadgdgPPPTRRKCFYTTPIKALSNQKYHDLVDRYG---VEHVGLLTGDNA- 130
                 68***************************9999996663.3588999999988788889*******************99988...455555666666. PP

                 HHHHHHHTT.CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  89 dqlskldng.vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                      + ng + +vv+t++ l ++l  g+ +l+ + ++V+DE++ l d  ++  +++++ +l       +++ +++ lSAT++
  KIR61991.1 131 -----I-NGdAPVVVMTTEVLRNMLYAGSATLEGLAYVVMDEVHYLADRFRGGVWEEVIIHL-------PASVTLVSLSATVS 200
                 .....6.5559**************99***********************************.......567789******98 PP

>> rRNA_proc-arch  rRNA-processing arch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.2e-08   3.7e-05       3      97 ..     505     605 ..     504     627 .. 0.82
   2 !    7.6   0.2    0.0011       3.3     227     267 ..     690     730 ..     687     732 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.2e-08
                     HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTC--TT...HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH.....GGG--TTEEEEEEETTTEEE CS
  rRNA_proc-arch   3 MlerSFsqfqnqkslpelekklkeleeelksitied...eedieeyyklrqqleelreeirkiltkpkni.....lpfLqpGRlvrvksnddldf 89 
                     +le+SF qfq+++s+  l +++++ +e +++  +e      d++ey+ lr ++++ ++ i +  +++ ++     l  L +G ++rv   ++ + 
      KIR61991.1 505 LLESSFAQFQADRSVVGLARQVQRNTETIDAYGAEAachHGDFDEYFALRVAIADRERAIARQGQHQRKAaavasLERLRVGDVIRV--PSGRRA 597
                     89*****************************99995566889**************9999988888766511111444556666777..588999 PP

                     EEEEEEEE CS
  rRNA_proc-arch  90 gwGivlnf 97 
                     g+++vl+ 
      KIR61991.1 598 GLAVVLDP 605
                     99999975 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0011
                     HHHHHHHHTSGG.GSSSHHHHHHHHHHHHHHHHHHHHHHHH CS
  rRNA_proc-arch 227 ealesrlaknpllhspnleelyalyekkvalqeeikelkke 267
                      +l  +l+++p++++p++ee+    e+++ l+++ +el+++
      KIR61991.1 690 SQLRTELRRHPCHACPDREEHARWAERRRRLERDTEELRQR 730
                     689999******77************************986 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   8.6e-10   2.6e-06       6     169 ..      37     199 ..      23     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 8.6e-10
                 HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S..................-EEEEESSHHHHHHHHHHGGGGTGG....GEEEES CS
      ResIII   6 eyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkee.............kflflvprkslleqtleefkkflseaykeigkkvs 90 
                 + Q ea+++l      +r   +l+ ++TG+GKT+v  +++  +l+ +  +              k++   p k+l +q ++++ + +  +   + + ++
  KIR61991.1  37 DFQREACQAL------ERGSGVLVCAPTGAGKTVVGeFAVHLALRGAPARPaaadgdgppptrrKCFYTTPIKALSNQKYHDLVDRYGVE---HVGLLT 126
                 5566666665......467789999**********977777777776555599***************************9999999988...79**** PP

                 SS-B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS- CS
      ResIII  91 gdkkkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTATp 169
                 gd+ ++      ++ ++v+t++ l + +     +  ++  +   ++++DE+H l++      w+e++ ++++  +l+ l+AT 
  KIR61991.1 127 GDNAIN-----GDAPVVVMTTEVLRNML-----YAGSATLEGLAYVVMDEVHYLADRfrgGVWEEVIIHLPAsVTLVSLSATV 199
                 ******.....*****************.....88888889999************76555****877775548999*****7 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.2e-06    0.0036       7     111 ..      51     181 ..      45     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.2e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee.........erpevvfvtlpsstsskdllrellralglelka..............erlsseelleal 82 
                  ++v++++G+GKT++ +  ++ + + a a+          + ++  f+t p +  s + +++l+  +g+e+ +                 ++e l+++l
  KIR61991.1  51 GVLVCAPTGAGKTVVGEFAVHLALRGAPARPaaadgdgppPTRRKCFYTTPIKALSNQKYHDLVDRYGVEHVGlltgdnaingdapvVVMTTEVLRNML 149
                 5789*****************99888777779999**98866666688888888889999*********************999888777888888888 PP

      AAA_22  83 eqalraravielliiDEaqhlr...seealee 111
                 +  + +    + ++ DE+++l    +  ++ee
  KIR61991.1 150 YAGSATLEGLAYVVMDEVHYLAdrfRGGVWEE 181
                 888888888899********965443555555 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.2e-06    0.0036      44     111 .]     373     448 ..     353     448 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.2e-06
                 EEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.........SSHHHHHHHHTTSSSTT CS
  Helicase_C  44 avlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.........rnvtsyiqriGRtgRag 111
                 a++h+ +    +e + e f +g ++ + at  ++ Gi++p   +V    l           ++ +y q  GR+gR g
  KIR61991.1 373 AAHHAGMLPVFKEVVEELFVRGLVKAVFATETLALGINMPARCVVL-ERLVkfngeahvdLTPGEYTQLTGRAGRRG 448
                 66777788888888999999********************655555.4444344444443557************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 6592.55
//
Query:       KIR61992.1  [L=234]
Description: tryptophan 2,3-dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-20   73.0   0.0    2.3e-14   53.5   0.0    2.0  2  Trp_dioxygenase  Tryptophan 2,3-dioxygenase
  ------ inclusion threshold ------
       0.14   12.0   0.0       0.76    9.6   0.0    2.2  3  DUF5609          Domain of unknown function (DUF5609)
       0.62   10.4   7.0        0.8   10.1   2.0    2.2  2  EccE             Putative type VII ESX secretion system trans


Domain annotation for each model (and alignments):
>> Trp_dioxygenase  Tryptophan 2,3-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   3.8e-18   2.3e-14      14     136 ..      14     128 ..       4     139 .. 0.93
   2 !   17.7   0.0   3.1e-07    0.0018     279     343 ..     159     221 ..     144     223 .. 0.90

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 3.8e-18
  Trp_dioxygenase  14 GllYgdYlkldkllsaqrllseadgkkvhdEhlFivihqayElWfkqivfeldsvrrllseeivdeertlkilkrlkRvvrilelLvaqvtvLe 107
                       + Y  Y+++d+ll++qr   +       dE lF v+hq +ElW+k+   el  ++  l+++   +++       l+R +  ++l+++q+++  
       KIR61992.1  14 DTDYARYMRVDELLDLQRGPDQ---VICRDELLFQVVHQSTELWLKLAASELREAAARLDAGEPGAAE-----LLLTRATLGVRLVTDQLEMFR 99 
                      578**************98766...7899*********************************999999.....579****************** PP

  Trp_dioxygenase 108 tltpldfldfReylspasGFqslqfRllE 136
                       l+p+df     +l+++sG  s  +R + 
       KIR61992.1 100 HLSPADFQAMQPALGNGSGAESPGWRQVQ 128
                      **********************9999875 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 3.1e-07
  Trp_dioxygenase 279 selyqlleaLmDidelltkWRynHvvlvqRmlGs.kaGtGGssGyayLrstvsdrykvFldLfnls 343
                        l++l+ea+++ de +  WR  H  +  R+ G   aGt Gs   +  r     + + F++L++l+
       KIR61992.1 159 DPLHRLAEAMVEWDERVSSWRVRHYQVALRIGGHgPAGTPGSPATMLARL---IDHRFFPELWQLR 221
                      5689**************************9999899*****99998887...78889******98 PP

>> DUF5609  Domain of unknown function (DUF5609)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.75   4.5e+03      10      25 ..      99     114 ..      99     116 .. 0.86
   2 ?   -2.1   0.0      0.57   3.4e+03      51      64 ..     137     150 ..     133     151 .. 0.79
   3 ?    9.6   0.0   0.00013      0.76      31      43 ..     175     187 ..     158     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.75
     DUF5609  10 rsltkdkleqlqeklg 25 
                 r+l++ +++++q +lg
  KIR61992.1  99 RHLSPADFQAMQPALG 114
                 69999****9998887 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.57
     DUF5609  51 qleqaveelklDva 64 
                 ++++ +++l++Dv+
  KIR61992.1 137 AFADHLAALGVDVS 150
                 66788999****96 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00013
     DUF5609  31 vaaWkVgsYdVll 43 
                 v++W+V +Y+V+l
  KIR61992.1 175 VSSWRVRHYQVAL 187
                 899********86 PP

>> EccE  Putative type VII ESX secretion system translocon, EccE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.0   0.00013       0.8       4      91 ..      48     131 ..      45     135 .. 0.87
   2 ?    4.5   0.8    0.0073        43      31      91 ..     126     182 ..     120     187 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00013
        EccE   4 qRttWlalrldpeenvaalsaRgggtegaaraaaaaarRlakaLreqGirarvleaeeldaalaalavglaaapadvreewrtirtrd 91 
                 + +t l l+l + e ++a+++ ++g++gaa+++ + a+  ++  ++q    r l+ ++++a+ +al+ g+ a+++     wr++++ +
  KIR61992.1  48 HQSTELWLKLAASELREAAARLDAGEPGAAELLLTRATLGVRLVTDQLEMFRHLSPADFQAMQPALGNGSGAESP----GWRQVQAAS 131
                 78899***************************9998888788888888889999999999999999999988888....788887665 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0073
        EccE  31 gaaraaaaaarRlakaLreqGirarvleaeeldaalaalavglaaapadvreewrtirtrd 91 
                 ++++a  +  r  a++L+  G+++++l  ++ ++ l +la++    ++   e+ +++r+r+
  KIR61992.1 126 QVQAASRRLGRAFADHLAALGVDVSALPGTDAADPLHRLAEAM--VEW--DERVSSWRVRH 182
                 5555666666666999999*********999999999999844..444..78888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1652.15
//
Query:       KIR61993.1  [L=341]
Description: ArsR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-23   80.7   0.0    1.1e-22   80.4   0.0    1.1  1  Methyltransf_2   O-methyltransferase domain
    1.6e-05   25.5   0.0    2.8e-05   24.7   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    1.8e-05   25.4   0.0    3.1e-05   24.6   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    7.4e-05   23.4   0.0    0.00014   22.5   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    0.00014   21.4   0.0    0.00024   20.7   0.0    1.3  1  MTS              Methyltransferase small domain
     0.0041   17.0   0.0     0.0091   15.9   0.0    1.6  1  Methyltransf_23  Methyltransferase domain
     0.0064   16.4   0.0      0.022   14.7   0.0    2.0  1  MarR_2           MarR family
  ------ inclusion threshold ------
      0.014   15.3   0.0      0.024   14.6   0.0    1.3  1  Dimerisation2    Dimerisation domain
      0.027   14.3   0.0       0.19   11.6   0.0    2.3  3  TrmB             Sugar-specific transcriptional regulator Trm


Domain annotation for each model (and alignments):
>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   5.4e-26   1.1e-22      24     209 ..     130     321 ..     101     322 .. 0.83

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 5.4e-26
                     -..HHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHH.HHHHHS-----TTE CS
  Methyltransf_2  24 s..lfeaikrdeeerakfnkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlpeVve.aAkehlsageeerv 113
                     +   f    r +e +a f + ++     v +++ ++ d      ++l+DvGGG G la+ +    P++++ vf lp V+   A ++   g+ er+
      KIR61993.1 130 TdeDFAWPPRTDEQTAAFERSMAVGLGPVLETLHRHADrlWADRRRLLDVGGGDGTLAARVLDDAPHLRADVFNLPAVAPlVADTRQRCGHPERL 224
                     455566677777888888888888888888888888888667889*********************************85356777679****** PP

                     EEEES-TTTS---.--SEEEEESSGGGS-HHHHHHHHHHHHHH--TT-EEEEEE----TTS---HHHHHHHHHHHHCSS-----HHHHHHHHHHC CS
  Methyltransf_2 114 efvgGdffkdslP.eaDaillkrvlhDwsdekcvklLkrvkkalpagGkvivveavlgadpsgeletelvdlimlvqteGkeRteaeyeellsea 207
                      fvgGdff ++lP   Da+ ++rvlhDw ++  ++l++  ++al +gG +++ e     d+ +++    + li + +   + R+ + y+ ll+e 
      KIR61993.1 225 GFVGGDFFAEPLPtGYDALAFVRVLHDWPNDVARRLVEAAYRALEPGGLLLIGEEFRTPDRLAMQFFWSYFLIGVDTCVSRLREVEFYTGLLKEV 319
                     *************666***********************************99998777777766666655555555667888888888888888 PP

                     T- CS
  Methyltransf_2 208 Gf 209
                     Gf
      KIR61993.1 320 GF 321
                     88 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.4e-08   2.8e-05       1      96 []     177     276 ..     177     276 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.4e-08
                      EEET-TTSHHHHHHHHTT....SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg....arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvL 88 
                      LdvG G G la+ + + +    a+v+++   + +++  +++   ++ ++ fv +d+   p++   +D+     vlh +  +  +++++ ++R L
       KIR61993.1 177 LDVGGGDGTLAARVLDDAphlrADVFNLPAVAPLVADTRQRCGHPE-RLGFVGGDFFAEPLPT-GYDALAFVRVLHDWpnDVARRLVEAAYRAL 268
                      8***********9996666788*************99999999988.69********99***9.78************97788899999***** PP

                      EEEEEEEE CS
  Methyltransf_11  89 kpgGllvi 96 
                      +pgGll+i
       KIR61993.1 269 EPGGLLLI 276
                      *****986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.6e-08   3.1e-05       2      97 .]     177     272 ..     176     272 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.6e-08
                      EEET-TTSHHHHHHHCTST..SSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlg..kakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      Ld+G G G+l++++++  +  +a+v  +   + +++ +r+r+ +  + ++ fv gd+ + p++   +D+   + +lh ++++ ++++++ ++r+
       KIR61993.1 177 LDVGGGDGTLAARVLDDAPhlRADVFNLPAVAPLVADTRQRCGH--PeRLGFVGGDFFAEPLPT-GYDALAFVRVLHDWPNDVARRLVEAAYRA 267
                      9**************99943678888888899999999999954..35*********9999987.89999998889999*9************* PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      L+pgG
       KIR61993.1 268 LEPGG 272
                      ****9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     7e-08   0.00014       1      99 []     177     274 ..     177     274 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 7e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsai..edakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldnir 90 
                      L++G+G+G+l++++l++ p+++  +  + + a   +d++++  + e++ +   +++a+ l        +D+     vlh +  +  r++++ ++
       KIR61993.1 177 LDVGGGDGTLAARVLDDAPHLRADVFNLPAVAPlvADTRQRCGHPERLGFVGGDFFAEPLP-----TGYDALAFVRVLHDWpnDVARRLVEAAY 265
                      8*****************8888888887776665588888888888777777777777765.....59**************77777******* PP

  Methyltransf_12  91 klLkpgGrl 99 
                      ++L pgG l
       KIR61993.1 266 RALEPGGLL 274
                      *******86 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.2e-07   0.00024      31     137 ..     172     276 ..     156     293 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.2e-07
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHHHHHHHHHHHHH CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeveekkfdlivsNPPfhagkatelavaeeliaeAkea 128
                  ++++lD+G G G l+a +++  p+++ ++++  a A  +a +  +  + e + +v  d ++e  +  +d++     +h   +  ++va++l+++A +a
  KIR61993.1 172 DRRRLLDVGGGDGTLAARVLDDAPHLRADVFNLPAVAPLVADTRQRCGHPErLGFVGGDFFAEPLPTGYDALAFVRVLH---DWPNDVARRLVEAAYRA 267
                 56789**************************999999888877777777778********************9855555...55569************ PP

                 EEEEEEEEE CS
         MTS 129 LkegGeLli 137
                 L++gG Lli
  KIR61993.1 268 LEPGGLLLI 276
                 *****8876 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.5e-06    0.0091      15     163 ..     164     324 ..     148     326 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.5e-06
  Methyltransf_23  15 rllpkl.raggrvLdiGcGtGil.......levlrengfsvtgvDlspeaveiae....kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvp 96 
                      r +++l   + r+Ld+G G+G+l       +++lr+ +f++ +v +  ++    +    ++   +   f   +a++    +d      vl+  p
       KIR61993.1 164 RHADRLwADRRRLLDVGGGDGTLaarvlddAPHLRADVFNLPAVAPLVADTR-QRcghpERLGFVGGDF---FAEPLPTGYDALAFVRVLHDWP 253
                      44444435788**********8877777777777777777777777533222.1134443333333333...6666666*************** PP

  Methyltransf_23  97 d..ppellrqiatllkpgGylllseplaslkedrllld..wlylvpag.rhi.sffsarslkelleeaGlevv 163
                      +    +l+  +++ l+pgG+ll+ e  +  + drl+++  w y  +   + + ++   + +  ll+e G+e v
       KIR61993.1 254 NdvARRLVEAAYRALEPGGLLLIGEEFRT-P-DRLAMQffWSYFLIGVdTCVsRLREVEFYTGLLKEVGFERV 324
                      777789***************99885443.2.22222222444332222444344444445567777777765 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.1e-05     0.022       9      58 ..      31      77 ..       8      80 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-05
                HHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSS CS
      MarR_2  9 rvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpe 58
                 +L aL  +p    + g+la+r+g  + ++ + l+ L++ G v+r++ ++
  KIR61993.1 31 GLLDALEPGP---ARLGDLAERFGFRPLRLYKFLDCLESLGVVTREEPDD 77
                4566666665...7*******************************96544 PP

>> Dimerisation2  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.2e-05     0.024       5      68 ..      14      76 ..      10      86 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.2e-05
  Dimerisation2  5 llnGFlaSkaLftAceLgvFdlLkeeeplsaeevaeelgasvkGterLldacvaLgLLerekke 68
                   l+nG +a  +L tA  Lg+ d+L+  +p ++ ++ae+ g+++  +  +ld + +Lg  +re+ +
     KIR61993.1 14 LANGPKAMDVLETALTLGLLDALEP-GPARLGDLAERFGFRPLRLYKFLDCLESLGVVTREEPD 76
                   678999999**************99.******************************99987544 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.1   4.1e+03      13      29 ..       9      25 ..       8      31 .. 0.74
   2 ?   11.6   0.0   9.7e-05      0.19      18      64 ..      36      86 ..      24      88 .. 0.86
   3 ?   -1.5   0.0       1.2   2.4e+03       9      20 ..     307     318 ..     306     324 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.1
                HCHHHHHHCCCHHCHHC CS
        TrmB 13 vYlaLlklgpatadeia 29
                +   Ll++gp+ +d + 
  KIR61993.1  9 ALMSLLANGPKAMDVLE 25
                67789999999887665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 9.7e-05
                HHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST....TTEEEE CS
        TrmB 18 lklgpatadeiaeelgvprskvYevLrsLedkGlVerekgr....pklYra 64
                l+ gpa+  ++ae+ g    + Y+ L  Le+ G+V+re+        +Yra
  KIR61993.1 36 LEPGPARLGDLAERFGFRPLRLYKFLDCLESLGVVTREEPDddiaAARYRA 86
                578999*******************************98655666556665 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.2
                 HCCCHCHHHHHH CS
        TrmB   9 yEakvYlaLlkl 20 
                  E++ Y+ Llk+
  KIR61993.1 307 REVEFYTGLLKE 318
                 5999*****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2420.11
//
Query:       KIR61994.1  [L=338]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-42  143.7   0.0    5.7e-42  143.4   0.0    1.1  1  Methyltransf_2   O-methyltransferase domain
    2.5e-12   46.6   0.0    1.6e-11   44.0   0.0    2.2  2  Dimerisation2    Dimerisation domain
    1.6e-09   38.4   0.0    3.1e-09   37.4   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    2.5e-07   30.7   0.0    3.6e-07   30.2   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    3.8e-06   27.6   0.0    6.4e-06   26.8   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    2.3e-05   25.0   0.0    4.3e-05   24.1   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
     0.0029   17.2   0.0     0.0046   16.5   0.0    1.2  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
       0.02   14.6   0.0       0.03   14.1   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
       0.07   13.1   0.0       0.11   12.4   0.0    1.2  1  Methyltransf_18  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   0.0   2.8e-45   5.7e-42       1     209 [.     107     316 ..     107     317 .. 0.94

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 2.8e-45
                     HTTHHHHHHHTS--..HHHHHS--HHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2   1 wseLadavregrnqiifkkafGislfeaikrdeeerakfnkglqessslvakkvleafdleglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     w+ +ada+r +r+   ++     slf+    d+e+ a+f +++ ++ss +a+ +  ++d+   ++l+DvGGG+Ga+  +  +  P+++++++Dlp
      KIR61994.1 107 WHRIADALRTNRPL-TWDPQSQQSLFDT--VDPEMVAQFWDAMFSTSSFTARALADTYDFGAHTRLLDVGGGAGAFPIELCRRLPQLRATILDLP 198
                     88999999999965.8999999998875..79*************************************************************** PP

                     HHHHHHHHHS.-----TTEEEEES-TTTS.---.--SEEEEESSGGGS-HHHHHHHHHHHHHH--TT-EEEEEE----TTS---HHHHHHHHHHH CS
  Methyltransf_2  96 eVveaAkehl.sageeervefvgGdffkd.slP.eaDaillkrvlhDwsdekcvklLkrvkkalpagGkvivveavlgadpsgeletelvdliml 187
                     +V ++A+e++   g+++r+  v+Gdf  d +lP   D++ll+ +lhDw++ + + lL++++ alp+gG+v++ e +l+ d++g+ e+ l+ ++ml
      KIR61994.1 199 HVCAKAQERIaAEGLADRIGTVAGDFLADpALPgGHDVVLLSMILHDWDEPTNRALLAKCHAALPPGGAVVICELLLDDDRTGPPEAALMGMNML 293
                     **********78899***********987359*777*********************************************************** PP

                     HC.SS-----HHHHHHHHHHCT- CS
  Methyltransf_2 188 vq.teGkeRteaeyeellseaGf 209
                     v  ++Gk+ + aey++ l +aGf
      KIR61994.1 294 VEtEGGKNYSGAEYAAWLADAGF 316
                     **66789999************9 PP

>> Dimerisation2  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   8.1e-15   1.6e-11       2      89 ..       7      89 ..       6      90 .. 0.94
   2 ?   -0.8   0.0      0.79   1.6e+03      55      80 ..     286     308 ..     284     313 .. 0.76

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 8.1e-15
  Dimerisation2  2 llellnGFlaSkaLftAceLgvFdlLkeeeplsaeevaeelgasvkGterLldacvaLgLLerekkeekkalYsntelastyLvsssp 89
                   l++l+ G +  k+L + +e+g+F  L+  +  +++e a+e g++ +  + Ll+a ++LgLLer      +++Y+ntela+++Lv++ p
     KIR61994.1  7 LMRLVAGVWGFKTLAVGVEFGLFTRLAGGRTITVAEAAAEFGLDERPADLLLAASASLGLLERA-----GDGYRNTELAEQFLVEGRP 89
                   78999999999***************************************************66.....479************9876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.79
  Dimerisation2  55 acvaLgLLerekkeekkalYsntela 80 
                    a++++++L   ++e+ ++ Ys +e a
     KIR61994.1 286 ALMGMNMLV--ETEG-GKNYSGAEYA 308
                    789999999..4455.5789988887 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   1.5e-12   3.1e-09       2      97 .]     170     266 ..     169     266 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 1.5e-12
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      Ld+G G G + ++l +rl++ + t +D+ +  +++a+er+++egl  ++  v gd+ + p   g  D+v++s+ lh ++++  +++l++++ +L
       KIR61994.1 170 LDVGGGAGAFPIELCRRLPQLRATILDL-PHVCAKAQERIAAEGLadRIGTVAGDFLADPALPGGHDVVLLSMILHDWDEPTNRALLAKCHAAL 262
                      9*****************99*******9.5667899***********************************877999***************** PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       KIR61994.1 263 PPGG 266
                      ***9 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.8e-10   3.6e-07      21     164 ..     164     320 ..     109     321 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.8e-10
  Methyltransf_23  21 raggrvLdiGcGtGillevl..rengfsvtgvDlspeaveiae.....kakkaqkdqfdeqeaaepqg....................kfdlIv 87 
                       a  r+Ld+G G G +  +l  r  +   t  Dl p+  ++a+     +                  g                      d++ 
       KIR61994.1 164 GAHTRLLDVGGGAGAFPIELcrRLPQLRATILDL-PHVCAKAQeriaaE------------------GladrigtvagdfladpalpgGHDVVL 238
                      34569***********9999644446799*****.44333332233331..................22223333333444444445599**** PP

  Methyltransf_23  88 lrevlehvpdpp..ellrqiatllkpgGylllseplasl....kedrllldwlylvpagrhisffsarslkelleeaGlevve 164
                      l++ l+  + p+  +ll++ ++ l pgG ++++e l ++    + + +l+ + +lv+  + ++ +s  +++ +l +aG+ ++e
       KIR61994.1 239 LSMILHDWDEPTnrALLAKCHAALPPGGAVVICELLLDDdrtgPPEAALMGMNMLVET-EGGKNYSGAEYAAWLADAGFVDIE 320
                      *********988779*******************887775665455556667888877.9*******************8875 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   3.2e-09   6.4e-06       1      98 [.     170     267 ..     170     268 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.2e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg..ssfDlvvasnvlhhl..kdirevldnir 90 
                      L++G+G G++  +l+++lp+++ t +D+   ++++a+e++a+++   ++++   a d l ++    +  D+v++s  lh +  ++ r++l++++
       KIR61994.1 170 LDVGGGAGAFPIELCRRLPQLRATILDLPH-VCAKAQERIAAEGL--ADRIGTVAGDFLADP-AlpGGHDVVLLSMILHDWdePTNRALLAKCH 259
                      8***************************55.555********997..557777777755433.3469**************866667******* PP

  Methyltransf_12  91 klLkpgGr 98 
                      ++L pgG 
       KIR61994.1 260 AALPPGGA 267
                      ******96 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   2.2e-08   4.3e-05       1      96 []     170     270 ..     170     270 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 2.2e-08
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvL 88 
                      LdvG G+G++  +l +r    r + +Dl + + + a+e++  egl  ++  v +d+   p   +  D+v++s+ lh +  +  +++l++++  L
       KIR61994.1 170 LDVGGGAGAFPIELCRRLpqLRATILDL-PHVCAKAQERIAAEGLadRIGTVAGDFLADPALPGGHDVVLLSMILHDWdePTNRALLAKCHAAL 262
                      8**************888999******6.88889***********999999******989888999************7667789********* PP

                      EEEEEEEE CS
  Methyltransf_11  89 kpgGllvi 96 
                       pgG +vi
       KIR61994.1 263 PPGGAVVI 270
                      ****9986 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.3e-06    0.0046      20     136 ..     154     269 ..     143     272 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.3e-06
                 HHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTST.TS-EEEEEE---STTTCHCHH CS
         MTS  20 sklLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeve.ekkfdlivsNPPfhagkatel 115
                 ++ L++t +  ++ ++lD+G GaG+  ++l ++ p+++ t++d  +   ++ ++ + a++l+  + +va d l++ + ++  d+++    +h+  +   
  KIR61994.1 154 ARALADTYDFGAHTRLLDVGGGAGAFPIELCRRLPQLRATILDLPHVCAKAQERIA-AEGLAdrIGTVAGDFLADPAlPGGHDVVLLSMILHDWDE--- 248
                 556666666667889*****************************998766655555.555544999999999998776889999988877777666... PP

                 HHHHHHHHHHHHHEEEEEEEE CS
         MTS 116 avaeeliaeAkeaLkegGeLl 136
                  + ++l+a+ ++aL +gG  +
  KIR61994.1 249 PTNRALLAKCHAALPPGGAVV 269
                 666778888888888888766 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.5e-05      0.03      16     100 ..     137     217 ..     124     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
  Methyltransf_16  16 sigrkvWdaavvlvkylekklakelganelsklsvlELGsGtGlvGlavaellpeakviltDleellellkknielnknalkskv 100
                      ++ ++ Wda   ++ + +++la++   +  ++++ l++G G+G + + + + lp+++ ++ Dl++++   ++ i+++   l++++
       KIR61994.1 137 EMVAQFWDAMFSTSSFTARALADTY--DFGAHTRLLDVGGGAGAFPIELCRRLPQLRATILDLPHVCAKAQERIAAE--GLADRI 217
                      566789*************998754..56678899***************************************994..466655 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.7e-05      0.11      15      78 ..     166     228 ..     156     240 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.7e-05
  Methyltransf_18  15 gsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGlekl 78 
                      ++r++D+G   g  pi+l+++    +++  D+  + ++ka+e i+ +gl d+i ++ +d l+  
       KIR61994.1 166 HTRLLDVGGGAGAFPIELCRRLPQLRATILDLP-HVCAKAQERIAAEGLADRIGTVAGDFLADP 228
                      5689***************************95.68899******************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2446.52
//
Query:       KIR61995.1  [L=182]
Description: RNA polymerase sigma factor SigC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-15   57.1   0.3    2.5e-15   55.9   0.1    1.7  2  Sigma70_r4_2  Sigma-70, region 4
    2.5e-15   56.0   0.1    6.2e-15   54.7   0.1    1.6  1  Sigma70_r2    Sigma-70 region 2
    1.1e-06   28.0   0.0      2e-06   27.2   0.0    1.4  1  Sigma70_r4    Sigma-70, region 4
    0.00025   21.0   0.0    0.00036   20.5   0.0    1.4  1  Sigma70_ECF   ECF sigma factor
     0.0013   18.5   0.1     0.0032   17.2   0.1    1.6  1  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
      0.032   14.3   0.2       0.15   12.2   0.2    2.2  2  HTH_28        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.4   4.2e+03       4      12 ..      48      56 ..      46      56 .. 0.80
   2 !   55.9   0.1   8.3e-19   2.5e-15       4      54 .]     115     165 ..     113     165 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.4
                  HHHHHTTS- CS
  Sigma70_r4_2  4 lrealaeLp 12
                  +++al++Lp
    KIR61995.1 48 FLRALRSLP 56
                  678999998 PP

  == domain 2  score: 55.9 bits;  conditional E-value: 8.3e-19
                   HHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   4 lrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   lr+++a L +++re+f+  ++ glsy+E+A+++g+++gt++sr++RAr+ L
    KIR61995.1 115 LRQLIAGLAPERREAFVATQVAGLSYAEAAQVCGCPVGTIRSRVARAREDL 165
                   89**********************************************976 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.1   2.1e-18   6.2e-15       1      67 [.      19      82 ..      19      85 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 2.1e-18
                HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHT CS
  Sigma70_r2  1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRk 67
                +v++++  v+r++ +l+g g +a+Dl+Qe+flr++r+++ f  +r+ s+++w+++iar+ a d++R 
  KIR61995.1 19 FVRALQGPVWRFLAHLAGPG-EADDLTQETFLRALRSLPGFA-GRS-SARTWVFSIARRVAVDHVRT 82
                58899999**********88.*********************.***.******************96 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   6.9e-10     2e-06       2      48 ..     119     165 ..     118     166 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 6.9e-10
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 +a L ++ re ++   + gl+++E +++ g + +++r++ +rA++ L
  KIR61995.1 119 IAGLAPERREAFVATQVAGLSYAEAAQVCGCPVGTIRSRVARAREDL 165
                 789****************************************9865 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.2e-07   0.00036      51     183 ..      42     169 ..       1     171 [. 0.85

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.2e-07
  Sigma70_ECF  51 aLvfeaflrlvdkekfpdlsgrdhlfalaaeamrrilidhaRrrkrqkRGGdvvraeldeeedsvdsdspdelleLdealerllsldpeqarlvelrk 148
                   L  e flr+++   +p + gr    +    + rr+ +dh R   ++ R   +   + + e + + ++ +d+ + L + +     l pe ++     +
   KIR61995.1  42 DLTQETFLRALR--SLPGFAGRSSARTWVFSIARRVAVDHVRTAVTRPRTAALPDWQAAAEGAGMAEPGTDDGVVLRQLIAG---LAPERREAFVATQ 134
                  478899999999..99*********9************************99999998888888999999999998776665...5688888888999 PP

  Sigma70_ECF 149 leGlsveEiAeklgvskrtverrlalaRawlerel 183
                  ++Gls +E+A++ g+   t++ r a aR+ l +++
   KIR61995.1 135 VAGLSYAEAAQVCGCPVGTIRSRVARAREDLVAAW 169
                  9***************************9887766 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.1e-06    0.0032       6      42 ..     125     162 ..     122     168 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.1e-06
      HTH_23   6 eRlrillllae.GlsvreIAreLgvsrrTvyrwlkryr 42 
                 eR ++  + ++ Gls++e+A+ +g++  T++  + r r
  KIR61995.1 125 ERREAFVATQVaGLSYAEAAQVCGCPVGTIRSRVARAR 162
                 566667777777*******************7666644 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.4   4.3e+03      41      49 ..     119     127 ..     119     129 .. 0.86
   2 ?   12.2   0.2   4.9e-05      0.15      11      38 ..     136     163 ..     125     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.4
      HTH_28  41 iagLvprrr 49 
                 iagL+p rr
  KIR61995.1 119 IAGLAPERR 127
                 799**9987 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4.9e-05
      HTH_28  11 aGhsvreaArelgisrrtvyrWikryee 38 
                 aG s++eaA+  g+   t+++ + r +e
  KIR61995.1 136 AGLSYAEAAQVCGCPVGTIRSRVARARE 163
                 688**********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1245.49
//
Query:       KIR61996.1  [L=432]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-10   40.5   1.5    2.6e-10   40.5   1.5    3.8  4  HAMP           HAMP domain
    4.8e-09   36.7   0.0    1.1e-08   35.5   0.0    1.6  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
    1.7e-06   28.0   0.9    1.7e-06   28.0   0.9    2.1  2  HisKA          His Kinase A (phospho-acceptor) domain
     0.0037   17.2   0.1      0.012   15.6   0.1    2.0  1  HATPase_c_2    Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.023   14.7   2.1      0.058   13.4   2.1    1.6  1  PilJ           Type IV pili methyl-accepting chemotaxis trans
       0.27   11.4   2.9       0.66   10.2   1.8    2.2  2  T3SS_needle_E  Type III secretion system, cytoplasmic E compo


Domain annotation for each model (and alignments):
>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   1.5   8.6e-14   2.6e-10       1      52 [.     164     215 ..     164     215 .. 0.97
   2 ?   -1.2   0.6      0.91   2.7e+03       3      25 ..     229     251 ..     228     267 .. 0.71
   3 ?   -1.8   0.0       1.4   4.2e+03      35      47 ..     326     335 ..     314     339 .. 0.63
   4 ?   -0.4   0.4      0.52   1.6e+03      13      38 ..     392     417 ..     391     418 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 8.6e-14
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 +lar+++rP+ +L+++  r+a+ +ld+r+++ g+ E++e+a a+N+++ r++
  KIR61996.1 164 RLARTLVRPITELSAVSHRLANAELDARVTPAGPAELREVAGALNHLAGRIQ 215
                 59**********************************************9986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.91
                 HHTTHHHHHHHHHHHHHHTTTBT CS
        HAMP   3 arrilrPLrrLaraarriaaGdl 25 
                 ++r+  PL  L+  a+++ + + 
  KIR61996.1 229 SHRLRTPLTALRLEAESLPDPQD 251
                 67788888888888887766544 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.4
                 SHHHHHHHHHHHH CS
        HAMP  35 DEiGeLarafNaM 47 
                 D   eLa+a++a+
  KIR61996.1 326 D---ELAAAVDAL 335
                 4...455555555 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.52
                 HHHHHHHHTTTBTSSTCCTTSSSHHH CS
        HAMP  13 LaraarriaaGdldtrlpvsgrDEiG 38 
                 +ar a++ a G+l+ r    g+ E++
  KIR61996.1 392 IARRAAEAAGGRLELRTAHGGGAEVR 417
                 7899999999***9997777777775 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   3.8e-12   1.1e-08       6     108 ..     328     420 ..     325     424 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 3.8e-12
                 HHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEE CS
   HATPase_c   6 LrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttf 104
                 L  +++ l++N   ++++++  +v++ ++++++ + v D+G+G+p + + +               g tGlGl i+++ +e  gG++++++  g+G ++
  KIR61996.1 328 LAAAVDALLGNVFAHTPDGTAFTVRLARRDGRVLLAVADSGPGMPAATVARGAS----------PAGSTGLGLDIARRAAEAAGGRLELRTAHGGGAEV 416
                 6678899********8899999*****8889***************99992222..........3467******************************* PP

                 EEEE CS
   HATPase_c 105 tftl 108
                 +++l
  KIR61996.1 417 RLWL 420
                 *998 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.3   3.9e+03      17      29 ..     173     185 ..     167     218 .. 0.58
   2 !   28.0   0.9   5.6e-10   1.7e-06       3      50 ..     222     275 ..     220     278 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHC CS
       HisKA  17 LsailgnaeaLkr 29 
                 ++ +++ ++ L +
  KIR61996.1 173 ITELSAVSHRLAN 185
                 5555555555533 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 5.6e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC........T-HSSCHHHHHHHHHHHHH CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkre......gklteelkeyletiesearr 50 
                 ++ +a+++H LrtPL+a+++ ae L +       +++ + l++++  ++++arr
  KIR61996.1 222 REQVADLSHRLRTPLTALRLEAESLPDPqdaariAAAADALERAVTGLIRQARR 275
                 789**********************77555566655556666666666666655 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   3.9e-06     0.012      30     109 ..     326     397 ..     278     418 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.9e-06
  HATPase_c_2  30 deirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeepkeslkegGrGlalikglv 109
                  de+  av+ ++ N++ h  ++     ++vrl ++++++ + vaDsGpg +++t ++++      ++ + G+Gl + ++ +
   KIR61996.1 326 DELAAAVDALLGNVFAHTPDG---TAFTVRLARRDGRVLLAVADSGPGMPAATVARGA-----SPAGSTGLGLDIARRAA 397
                  577778888888888888775...5699***********************9999885.....67899999998877765 PP

>> PilJ  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.1   1.9e-05     0.058      15     100 ..     203     278 ..     198     292 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
        PilJ  15 vAGslRMqsqRlakeallaaagaydaaearaqlretiaqfdrtlaalrlgdpapgllvpaeavraqleaveqlWqelkkpaeaala 100
                 vAG l  ++ R+           +  a++r+q+++  +++++ l+alrl +++ + ++ a  + a+ +a+e+    l ++a++  +
  KIR61996.1 203 VAGALNHLAGRIQ----------VLLAQEREQVADLSHRLRTPLTALRLEAESLPDPQDAARIAAAADALERAVTGLIRQARRDRS 278
                 6777777777777..........6679************************9988888777*************999999954433 PP

>> T3SS_needle_E  Type III secretion system, cytoplasmic E component of needle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.8   5.4e+03      14      28 ..     174     188 ..     167     197 .. 0.77
   2 ?   10.2   1.8   0.00022      0.66       8      57 ..     218     266 ..     216     271 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.8
                    HHHHHHHHHHHHHHH CS
  T3SS_needle_E  14 eqakelqdrLeaAra 28 
                    +++ ++++rL+ A+ 
     KIR61996.1 174 TELSAVSHRLANAEL 188
                    566778888888875 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00022
                    HCCCCTHHHHHHHHHHHHHHHHHHHHHCCTSSHHHHHHHHHHHHHHHHHH CS
  T3SS_needle_E   8 LrhapgeqakelqdrLeaArarLkqalsspqspeeYqqlqllaeAleaAe 57 
                    L++ + eq++ l++rL+  ++ L+ ++ s+ +p+  ++++  a+Ale+A 
     KIR61996.1 218 LAQER-EQVADLSHRLRTPLTALRLEAESLPDPQDAARIAAAADALERAV 266
                    55566.9*****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2983.51
//
Query:       KIR61997.1  [L=230]
Description: response regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-25   86.9   0.1    1.9e-24   85.5   0.1    1.7  2  Trans_reg_C    Transcriptional regulatory protein, C terminal
    9.1e-24   83.8   0.2    1.2e-23   83.4   0.2    1.2  1  Response_reg   Response regulator receiver domain
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.043   13.7   0.0    1.9  1  MarR_2         MarR family
      0.049   13.8   0.0       0.21   11.8   0.0    1.9  2  YlzJ           YlzJ-like protein
       0.18   11.4   0.0        4.7    6.8   0.0    2.5  2  GerE           Bacterial regulatory proteins, luxR family
       0.23   11.8   1.8       0.23   11.9   0.7    1.5  2  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.3   6.8e+03      48      60 ..      33      45 ..      15      49 .. 0.71
   2 !   85.5   0.1   6.5e-28   1.9e-24       3      76 ..     149     222 ..     147     223 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHTT CS
  Trans_reg_C 48 vhisrLRkkLedd 60
                 +++  LR+ L+++
   KIR61997.1 33 TAMDGLRDALDNR 45
                 5566788888774 PP

  == domain 2  score: 85.5 bits;  conditional E-value: 6.5e-28
                  EEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEE CS
  Trans_reg_C   3 eveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYr 76 
                   veltp+ef+lL+ L+++pg+vv++ eLl evw+  + ++d+tvdvh s LR+kL++++++pr+++tvrgvG r
   KIR61997.1 149 AVELTPREFDLLHHLAARPGEVVTKRELLTEVWQIPYGGADKTVDVHLSWLRRKLGENAQQPRYLHTVRGVGVR 222
                  589*********************************************************************76 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.2   4.1e-27   1.2e-23       2     111 ..       5     112 ..       4     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 4.1e-27
                   EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEEE CS
  Response_reg   2 livdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddfl 98 
                   l+++Dd ++r+ l ++l+++g   va+a+++ + l+ +  +++dl++lD+ +p++dG ell+++r+ +  +pvi+ ta+++e+++v++l+agadd++
    KIR61997.1   5 LLIEDDLTIRTPLVRALRDRGH-AVAAASTAMDGLRDALDNRPDLVVLDLGLPDLDGRELLRMLRAVS-AVPVIVATARDDETEIVRVLDAGADDYV 99 
                   89********************.*******************************************99.**************************** PP

                   ESSG-HHHHHHHH CS
  Response_reg  99 sKpfdpeeLlkal 111
                   +Kpf+ ++L +++
    KIR61997.1 100 VKPFTAAQLDARV 112
                   *********9987 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.4e-05     0.043       3      28 ..     152     177 ..     150     204 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.4e-05
                 --HHHHHHHHHHHCTTTSEEEHHHHH CS
      MarR_2   3 ltpaqarvLaaLgrrpgrdltvgela 28 
                 ltp ++++L++L++rpg+ +t +el 
  KIR61997.1 152 LTPREFDLLHHLAARPGEVVTKRELL 177
                 8****************966777764 PP

>> YlzJ  YlzJ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.9e-05      0.21      26      55 ..      70      99 ..      62     104 .. 0.89
   2 ?   -1.3   0.0      0.86   2.6e+03      18      35 ..     137     154 ..     128     158 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
        YlzJ 26 vngvpllvekveegqyrIvRllStdPndYL 55
                v  vp++v    +++ +IvR+l+  ++dY 
  KIR61997.1 70 VSAVPVIVATARDDETEIVRVLDAGADDYV 99
                5789************************96 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.86
        YlzJ  18 eekykevevngvpllvek 35 
                 +++ ++v+ +gv +++++
  KIR61997.1 137 DPRARQVTLDGVAVELTP 154
                 678899999***999887 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.066     2e+02       2      15 ..     151     164 ..     150     165 .. 0.86
   2 ?    6.8   0.0    0.0016       4.7      31      46 ..     189     204 ..     185     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.066
                 SS-HHHHHHHHHHC CS
        GerE   2 sLskRErevLrlla 15 
                  L++RE + L+ la
  KIR61997.1 151 ELTPREFDLLHHLA 164
                 59*******99887 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHHHHHHT CS
        GerE  31 ekTVkvhksnimkKLn 46 
                  kTV vh+s + +KL+
  KIR61997.1 189 DKTVDVHLSWLRRKLG 204
                 79*************8 PP

>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.7   7.6e-05      0.23      41     138 ..      28     118 ..      10     143 .. 0.68
   2 ?   -3.4   0.0       3.6   1.1e+04      19      34 ..     195     210 ..     184     220 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.6e-05
                    HCCH-H..HHHHHHHHCTGGG-TSEEEEE--CCCCCTT--HHHHHHH..HHHHHHHHCCC...GEEE.....CEEEEE-TTT-TTSTCCHHHHHHH CS
  Lipase_GDSL_2  41 vsGattallrllerlrdllrlkpdlvtiliGtNDlgrgvpaaaaaandnleelidalraaapgaril.....vlgplpptpeaaadarelnaviaa 131
                    v  a+t      ++lrd+l+ +pdlv++ +G  Dl+ +      +a  ++  +++++r+   ++ i+     ++  +++ p++      +++  a+
     KIR61997.1  28 VAAAST----AMDGLRDALDNRPDLVVLDLGLPDLDGRELLRMLRAVSAVPVIVATARDD--ETEIVrvldaGADDYVVKPFT------AAQLDAR 111
                    444444....456788999***************98888888777777889999988888..666663334322223333322......3344445 PP

                    HHHHHHH CS
  Lipase_GDSL_2 132 ynealre 138
                    ++++lr+
     KIR61997.1 112 VRAVLRR 118
                    5555554 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.6
                    HCCCCCCCHHHTT-EE CS
  Lipase_GDSL_2  19 ypaylarllaarlgld 34 
                      ++l r+l+++ + +
     KIR61997.1 195 HLSWLRRKLGENAQQP 210
                    4567777777777333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1632.72
//
Query:       KIR61998.1  [L=149]
Description: septum formation initiator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        2.8    7.6   5.5       0.57    9.8   2.0    1.6  2  RhodobacterPufX  Intrinsic membrane protein PufX


Domain annotation for each model (and alignments):
>> RhodobacterPufX  Intrinsic membrane protein PufX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.0   3.2e-05      0.57      27      50 ..       9      32 ..       5      35 .. 0.91
   2 ?   -2.6   0.1      0.24   4.4e+03      58      66 ..      52      60 ..      48      61 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 3.2e-05
  RhodobacterPufX 27 GAgyAavfvlvllfllvalaliGr 50
                      Ag+ a  vl++l++++a++l+G+
       KIR61998.1  9 VAGWLATAVLATLVGMAAIRLVGE 32
                     59*********************8 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.24
  RhodobacterPufX 58 qtPdPvnrg 66
                      tP+P+  g
       KIR61998.1 52 ATPAPTASG 60
                     59***8766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1015.85
//
Query:       KIR61999.1  [L=298]
Description: FAD-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-41  141.2   0.1    3.3e-41  140.5   0.1    1.3  1  SIP            Siderophore-interacting protein
    5.4e-36  123.5   0.0    8.2e-36  122.9   0.0    1.3  1  FAD_binding_9  Siderophore-interacting FAD-binding domain


Domain annotation for each model (and alignments):
>> SIP  Siderophore-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.5   0.1   3.7e-45   3.3e-41       3     119 .]     150     293 ..     148     293 .. 0.93

  Alignments for each domain:
  == domain 1  score: 140.5 bits;  conditional E-value: 3.7e-45
         SIP   3 wvllagDeTAlPAiaaiLeelpadaqvravievpdaadelelsapaaveltwlvregaaaagelLaealrelel......................... 76 
                 ++llagDeTA+PAi aiLe+lpada+++a++evp++ad l ++ap+++++twl+r g  ++g++L+ a+++++l                         
  KIR61999.1 150 RLLLAGDETAVPAITAILERLPADARGQALLEVPEPADALRVAAPPGMRVTWLPRAGG-RHGSRLVPAVAAADLlcgpppgagpvvdvdvdrellwevp 247
                 78********************************************************.***************9998888888888888888877776 PP

         SIP  77 ...pagelyvwvagEaavvkalRrhlvkergldrkqvaamgYWrrg 119
                    ++ +ly+w+agEa+v+++lRrhlv ergldr++va+mgYWr g
  KIR61999.1 248 tpaTPVPLYAWLAGEAGVIRTLRRHLVAERGLDRRAVAFMGYWRLG 293
                 643366*************************************986 PP

>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.0   9.1e-40   8.2e-36       2     119 ..      17     132 ..      16     134 .. 0.96

  Alignments for each domain:
  == domain 1  score: 122.9 bits;  conditional E-value: 9.1e-40
  FAD_binding_9   2 vvrverlspslrrvtltgeelagfksdgtDqhikLllpepgqtepelppelteeglqeweelpederpvmRtYtvraldaeaeeldidfvlHgdeg 97 
                    v +v+rlsps++rvt+tg++l++f+ +g+Dq+ikL lp pgq+ ++lp+  ++++++++++lpe  r ++RtYtvra +++ +e+d+d+vlHgd g
     KIR61999.1  17 VRAVRRLSPSFVRVTFTGADLDRFADNGYDQRIKLALPLPGQAGVNLPE--GPDWYARYRALPEHLRNPVRTYTVRAARPHLAEVDVDLVLHGDGG 110
                    8899****************************************98754..6******************************************** PP

  FAD_binding_9  98 paarwAaqAqpGdelaivgPgg 119
                    pa+rwA+++ pGd+ a++gP++
     KIR61999.1 111 PATRWARRVCPGDRAALLGPDA 132
                    ********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2122.62
//
Query:       KIR62000.1  [L=192]
Description: siderophore biosynthesis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-49  167.3   0.1      2e-49  167.0   0.1    1.1  1  Acetyltransf_8  Acetyltransferase (GNAT) domain
    6.7e-06   26.8   0.0    9.1e-06   26.4   0.0    1.2  1  Acetyltransf_3  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.0   0.1   2.2e-53     2e-49       2     145 .]      25     169 ..      24     169 .. 0.98

  Alignments for each domain:
  == domain 1  score: 167.0 bits;  conditional E-value: 2.2e-53
                     .GGGHHHHHHHCTSCCCHHHH-----HHHHHHHHHHHC.STTEEEEEEEETTEEEEEEEEEEGGGCGGGGCS---TT-EEEEEEESSHH.HCTTT CS
  Acetyltransf_8   2 peaDlellhrWmnrprvaewweeagtleevrellakldadphsepliglldgepvgyfeiYwakedelaeyydaepgdrGiHlligeae.argkg 95 
                     p++D+++lh+W++r+r ++w++ ++++e+vre++++ld+  +++++++  dg+p+++f++Y++++d+++e+yd++pgd+G+Hllig+++  +++g
      KIR62000.1  25 PARDVDVLHDWVTRERSRFWGMREASRERVREIYEYLDSLATHHAYLVHRDGRPAALFQTYEPAADPVGECYDVRPGDFGVHLLIGPPDgGVEPG 119
                     789***********************************************************************************9994599** PP

                     CHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEEEEE CS
  Acetyltransf_8  96 lttallralvhylfadprtrrvvvEPdvrNerairllekaGfekekevdl 145
                     +t a+l a++++++adp+  r+v+EPd+rN +a+++l +aGf++  ++dl
      KIR62000.1 120 FTGAVLDAFLAFVLADPGRLRIVAEPDARNDKAVARLVRAGFVPGPQIDL 169
                     **********************************************9986 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0     1e-09   9.1e-06       2     137 ..      18     161 ..      17     162 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1e-09
  Acetyltransf_3   2 LlLrpltee.Dlealfelrsdpevmrylpepltleeaeewlerawaeeseeegygwaiv.........l...kdtgviGsvglrdleeedeeael 83 
                     +l+rp++++ D++ l+ ++++++ + ++  ++++e  +e +e ++ +    +   ++++             ++ + +G +  +d+ +    + +
      KIR62000.1  18 VLIRPVEPArDVDVLHDWVTRERSRFWGMREASRERVREIYE-YLDS--LATHHAYLVHrdgrpaalfQtyePAADPVGEC--YDVRPG--DFGV 105
                     689***9999**********8887767555566666666655.2111..22223345521111111111221444357777..333333..3889 PP

  Acetyltransf_3  84 gymlapsfwgk..GyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                      ++++p+  g   G++  ++ a+l ++ +++g  r+va+ d++N + ++ l ++Gf
      KIR62000.1 106 HLLIGPPDGGVepGFTGAVLDAFLAFVLADPGRLRIVAEPDARNDKAVARLVRAGF 161
                     9****76444456******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1287.99
//
Query:       KIR62001.1  [L=738]
Description: alpha-amylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-58  195.2   3.3    5.3e-32  109.6   0.7    2.7  2  CBM_20         Starch binding domain
    8.7e-20   71.5   0.0    1.5e-19   70.8   0.0    1.3  1  Alpha-amylase  Alpha amylase, catalytic domain
  ------ inclusion threshold ------
       0.16   11.5  18.9       0.36   10.4  18.9    1.5  1  PT             PT repeat


Domain annotation for each model (and alignments):
>> CBM_20  Starch binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.1   3.5e-28   2.1e-24       2      94 ..     541     629 ..     540     632 .. 0.94
   2 !  109.6   0.7   8.9e-36   5.3e-32       2      96 ..     644     734 ..     643     735 .. 0.95

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 3.5e-28
      CBM_20   2 vsVtFkvnattqlgesvyivGsiseLGnWnpkkavklsaseqtssyplWsttvslpagtkieYkyikkdsdgsvtWesgenrsltvpssgsst 94 
                 v+ tF+v at + g++vy+vGs++eLG+W p++avkl+a+       ++++ v+lp +t++eYk+ikk++ g+vtWesg+nr++t+p+sg+  
  KIR62001.1 541 VATTFTVGATPAAGQDVYVVGSVAELGSWAPASAVKLTAQGG----GTYRAVVDLPRSTAVEYKFIKKTAAGAVTWESGANRTFTTPASGTYA 629
                 889****99*****************************7655....99*****************************************9876 PP

  == domain 2  score: 109.6 bits;  conditional E-value: 8.9e-36
      CBM_20   2 vsVtFkvnattqlgesvyivGsiseLGnWnpkkavklsaseqtssyplWsttvslpagtkieYkyikkdsdgsvtWesgenrsltvpssgssttt 96 
                 ++ +F+ ++tt++g++vy+vG++++LG Wnp++av+ls    +++yp+W++tv+lp +t++eYky+kk+ dg+vtWesg nr++t+p+sg+ t+t
  KIR62001.1 644 IATSFNATVTTSYGQNVYVVGNVAALGGWNPANAVALS----SATYPVWRATVDLPPNTAVEYKYVKKNPDGTVTWESGGNRTFTTPASGTRTNT 734
                 7789***99*****************************....5789********************************************99875 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   2.5e-23   1.5e-19      42     324 ..     110     371 ..     104     373 .. 0.75

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 2.5e-23
                    CCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSGGGCCC-E..........ESS-STTC-TTTTCSCEECTTTTCEE CS
  Alpha-amylase  42 tkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgepkrdyyiwkegk....eekeppnnwkslfdgsaweydekaqeyy 133
                    +k++ +fG+ +++ ++++++h+ g++v +D+VvNH++ +++  +      +  ++  y +        ++ + p ++   ++g+   ++++aq   
     KIR62001.1 110 YKLESRFGNRAQFAAMVTACHNAGVRVYVDAVVNHMAGANNPESVVGYAGTDFSGPGYSFPA-VpygtGDFHRPGDNC-PTNGTINDWNNEAQ--V 201
                    578899********************************999866555545555555555332.224443444444433.23333333333332..5 PP

                    ESSS-TTS-BB-TTTCCCCCCCCCCCCCCCTTT-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHTCCGTT-EEEEE-TT-SCCCHCCCC-CG CS
  Alpha-amylase 134 lhlflkklpdLnteneevrkelkdvvkfwlekgidGfRlDvvkhvskvealesngeflheftqalnetvasrkevmtvgEvssdasedlrvyttea 229
                    +  +l +l dL te+++vr+++   ++ ++  g+dGfR+D+vkhv+k        e    +  +ln+tva++k  ++  E++++as+d+ + + + 
     KIR62001.1 202 TSCELLSLTDLYTEKDSVRTKIAAFLNDMIGLGVDGFRVDAVKHVKK--------EDFAAILGKLNNTVAENKRPYVAQEIFDGASNDA-LKARAF 288
                    7899*******************************************........899999999999*99*************999743.333333 PP

                    G-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-CCCTTCEEES--TTS--HHHHTTSSTTTTHHHHHHHHHCCCTSS.SEEEEE CS
  Alpha-amylase 230 rlelemvldfphldvaqkakikeqlksisakklkellkkwlkaleeaaeeavtflgnHDqeRilsrlgddsaeaekklklaaillltlr.GvpviY 324
                      + + vldf   +  ++a+      + s+ +l++ + +w  + +    + + ++ nHD eR + +l++++        la+ + l ++ G p +Y
     KIR62001.1 289 IGNGD-VLDFAYAKGLKSAF------QGSISTLAN-VGSWNLDAPS--ANVFAMVTNHDLERDGVVLSYKNG---SDYTLANYFALAYPhGKPSVY 371
                    34444.67777777666666......334566655.6788888885..7888999*******9999999884...677778877776644777777 PP

>> PT  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  18.9     6e-05      0.36       5      28 ..     516     539 ..     512     540 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6e-05
          PT   5 qPtaqPTvqPTgqPtaqPTdqPta 28 
                  Pta PTv+PT+ Pta PT  Pt+
  KIR62001.1 516 SPTASPTVSPTASPTATPTTNPTD 539
                 455555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5285.32
//
Query:       KIR62002.1  [L=236]
Description: FAD-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      9e-22   77.8   1.1    1.3e-21   77.3   1.1    1.2  1  SIP            Siderophore-interacting protein
    1.6e-10   41.2   0.2    3.8e-10   40.0   0.0    1.7  2  FAD_binding_9  Siderophore-interacting FAD-binding domain


Domain annotation for each model (and alignments):
>> SIP  Siderophore-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   1.1   1.4e-25   1.3e-21       2     118 ..     122     235 ..     121     236 .] 0.93

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 1.4e-25
         SIP   2 dwvllagDeTAlPAiaaiLeelpadaqvravievpdaad.elelsapaaveltwlvregaaaagelLaealrelelpagelyvwvagEaavvkalRrhl 99 
                 ++++l+gD ++lPA++++L++  +d  +++++e +++++  l+ +a++  e+ w++r++    g +L++++r++   a++ ++wva+Eaa+++ + rhl
  KIR62002.1 122 RHLYLVGDAASLPAVNSLLDAA-PDLPATVWVEYAHDDEkALPPRARPCHEVVWVPRRDG---GRHLVDTVRTALPGAADAHYWVACEAASTRDITRHL 216
                 6789*****************9.57888889988766553899999*************9...************9999******************** PP

         SIP 100 vkergldrkqvaamgYWrr 118
                 ++++g+ r+q++a +YW++
  KIR62002.1 217 RRTLGVGRHQLTALAYWSA 235
                 *****************85 PP

>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   4.3e-14   3.8e-10      54     113 ..      51     106 ..      24     111 .. 0.90
   2 ?   -3.2   0.0         1   9.4e+03       4      15 ..     208     219 ..     206     227 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 4.3e-14
  FAD_binding_9  54 eeglqeweelpederpvmRtYtvraldaeaeeldidfvlHgdegpaarwAaqAqpGdela 113
                    + +++ w  +++d rp+ R Yt+ + d++a+++ ++f+lH+    aarwA+ A++Gd++ 
     KIR62002.1  51 TMWIRLW--FDDDGRPHQRAYTLVDPDPAAGRFSLEFALHDG--CAARWASAARVGDTID 106
                    4577789..*******************************86..*************996 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1
  FAD_binding_9   4 rverlspslrrv 15 
                    ++++++ +lrr 
     KIR62002.1 208 STRDITRHLRRT 219
                    678999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1797.79
//
Query:       KIR62003.1  [L=188]
Description: siderophore biosynthesis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-51  171.8   0.1    7.7e-51  171.6   0.1    1.0  1  Acetyltransf_8  Acetyltransferase (GNAT) domain
    3.9e-06   27.6   0.0    5.2e-06   27.2   0.0    1.1  1  Acetyltransf_3  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.6   0.1   8.6e-55   7.7e-51       1     145 []      19     163 ..      19     163 .. 0.99

  Alignments for each domain:
  == domain 1  score: 171.6 bits;  conditional E-value: 8.6e-55
                     -.GGGHHHHHHHCTSCCCHHHH-----HHHHHHHHHHHC.STTEEEEEEEETTEEEEEEEEEEGGGCGGGGCS---TT-EEEEEEESSHHHCTTT CS
  Acetyltransf_8   1 dpeaDlellhrWmnrprvaewweeagtleevrellakldadphsepliglldgepvgyfeiYwakedelaeyydaepgdrGiHlligeaeargkg 95 
                     dp+a++ellh W+++pr+++w++ + t++evr+++a +d+  +++++++lldg pvg+f++Y++++d+++e y+++pgd+G+Hll+++ ++ g+ 
      KIR62003.1  19 DPQAHAELLHGWVTQPRAVYWGMGGYTVDEVRDVYAFVDGLATHHAYLILLDGAPVGLFQTYQPEADPVGERYPVRPGDVGMHLLLAPGRRAGRD 113
                     789******************************************************************************************** PP

                     CHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEEEEE CS
  Acetyltransf_8  96 lttallralvhylfadprtrrvvvEPdvrNerairllekaGfekekevdl 145
                     +t a+ +alv++lf+dp+ +rvvvEPdvrNe a+r+le+ Gf++ +e+d+
      KIR62003.1 114 FTGAVGPALVRFLFRDPARQRVVVEPDVRNELALRRLERSGFTFDDEIDM 163
                     ***********************************************996 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   5.8e-10   5.2e-06       9     138 .]      21     156 ..      13     156 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 5.8e-10
  Acetyltransf_3   9 eeDlealfelrsdpevmrylpepltleeaeewlerawaeeseeegygwaivlkdtgviGsvglrdleeedee.........aelgymlaps.fwg 93 
                     ++++e l+ ++++p+ + ++   +t++e ++ ++ +    +++    ++i l d+  +G    ++ e ++           + + ++lap    g
      KIR62003.1  21 QAHAELLHGWVTQPRAVYWGMGGYTVDEVRDVYA-FVDGLATH--HAYLI-LLDGAPVGLFQTYQPEADPVGerypvrpgdVGMHLLLAPGrRAG 111
                     3499999********887977789*********9.44333333..45778.445526****8887666654478999995555557888886779 PP

  Acetyltransf_3  94 kGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     + ++  +  al++++f+++  +r+v++ d +Ne   r le+ Gf+
      KIR62003.1 112 RDFTGAVGPALVRFLFRDPARQRVVVEPDVRNELALRRLERSGFT 156
                     99******************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1434.80
//
Query:       KIR62004.1  [L=428]
Description: serine/threonine protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-07   29.6   1.4    7.9e-06   25.6   0.1    2.5  2  PQQ_2      PQQ-like domain
    3.6e-06   26.6   0.0      0.079   12.9   0.0    3.8  3  PQQ        PQQ enzyme repeat
  ------ inclusion threshold ------
      0.015   14.6   0.0       0.92    8.7   0.0    2.7  3  Lactonase  Lactonase, 7-bladed beta-propeller
       0.06   13.9   1.0        1.5    9.4   0.1    3.6  3  PQQ_3      PQQ-like domain


Domain annotation for each model (and alignments):
>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   1.8e-09   7.9e-06      44      99 ..     133     191 ..      75     251 .. 0.63
   2 ?    2.4   0.0     0.022        97      39     151 ..     381     407 ..     350     418 .. 0.56

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.8e-09
       PQQ_2  44 gggrlvaldaatGkvlWettlegpvvga...plvaegrvvvvasdg.qlialdaedGkrl 99 
                  ++ +v++d  tG+v+W++ ++g+ +++      ++ rv v as   ++  ld+++Gk++
  KIR62004.1 133 SFADVVSIDLRTGAVRWRFPVSGF-RSDhmaVSPDGTRVAVSASTSdTVHVLDINTGKQV 191
                 566666666666666666666665.44445456666666666555556666666666663 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.022
       PQQ_2  39 lfvatgggrlvaldaatGkvlWettlegpvvgaplvaegrvvvvasdgqlialdaedGkrlWstqqrseepaelrssaspavagdtvvvgessgklval 137
                 +++ +g                                                                                        +++a+
  KIR62004.1 381 VISESG--------------------------------------------------------------------------------------ADQVTAI 393
                 333333......................................................................................4455555 PP

       PQQ_2 138 dpkdGkvlWerela 151
                 + ++G+++ + +++
  KIR62004.1 394 SFATGQKVVSVPVG 407
                 55555555555554 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.8e-05     0.079      14      30 ..     139     155 ..     136     162 .. 0.88
   2 !    6.8   0.0    0.0015       6.9      11      30 ..     179     198 ..     169     200 .. 0.80
   3 ?    2.0   0.0     0.052   2.3e+02      11      32 ..     389     410 ..     381     412 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.8e-05
                 EEETTTCCEEEEEESSS CS
         PQQ  14 AlDadTGkvlWrfktgg 30 
                  +D++TG v+Wrf+++g
  KIR62004.1 139 SIDLRTGAVRWRFPVSG 155
                 58************987 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0015
                 EEEEEETTTCCEEEEEESSS CS
         PQQ  11 ylyAlDadTGkvlWrfktgg 30 
                 ++  lD++TGk + +f tg+
  KIR62004.1 179 TVHVLDINTGKQVGSFGTGD 198
                 7999*******998888876 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.052
                 EEEEEETTTCCEEEEEESSSCG CS
         PQQ  11 ylyAlDadTGkvlWrfktggpv 32 
                 ++ A+  +TG+++ ++++g+++
  KIR62004.1 389 QVTAISFATGQKVVSVPVGDHP 410
                 68899999*********99987 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0002      0.92     276     322 ..     143     187 ..     103     195 .. 0.73
   2 ?   -0.8   0.0      0.16   7.3e+02     295     318 ..     329     352 ..     274     360 .. 0.62
   3 ?    2.5   0.0     0.016        73     140     176 ..     363     399 ..     314     411 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0002
                 TT--EEEEEEEE-SSS.--EEEE-TTSSEEEEEETTTTEEEEEEEET CS
   Lactonase 276 adgtltlveevstegkfPRdfaldpsgklllvanqksdnvtvferda 322
                 ++g +++  ++++ g    ++a++p+g+ ++v+  +sd+v+v+ ++ 
  KIR62004.1 143 RTGAVRW--RFPVSGFRSDHMAVSPDGTRVAVSASTSDTVHVLDINT 187
                 5555554..3555555556899********************99974 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.16
                 EEEE-TTSSEEEEEETTTTEEEEE CS
   Lactonase 295 dfaldpsgklllvanqksdnvtvf 318
                  ++++p+g  l va+  +d  t++
  KIR62004.1 329 GMSISPDGAKLCVAGTMDDYTTIV 352
                 355566666666666555555555 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.016
                 -SSTTEEEEEE-TTSSEEEEEETTTTEEEEEEE.-TT CS
   Lactonase 140 qesphaHsvvldpdgkfllvpDLGtDrvrvykldkat 176
                  +++++ +++++ dg+  ++   G+D+v+   +  ++
  KIR62004.1 363 VTASKPYWATVSGDGRDCVISESGADQVTAISFATGQ 399
                 4788999999999999999999999999998886655 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.53   2.4e+03      17      40 .]     114     144 ..      85     144 .. 0.66
   2 ?    9.4   0.1   0.00034       1.5       1      40 []     145     187 ..     145     187 .. 0.74
   3 ?   -0.1   0.0      0.34   1.5e+03       1      18 [.     209     231 ..     209     247 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.53
       PQQ_3  17 p.....avdgglvyvgtg..dGtlyAlDaet 40 
                 +     ++ +g+  v++      ++++D +t
  KIR62004.1 114 LvddmyTTPDGTALVASRpsFADVVSIDLRT 144
                 3444445568888888887777788888776 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00034
       PQQ_3   1 GevlWsvqlpgpvnsspavd.ggl..vyvgtg.dGtlyAlDaet 40 
                 G v+W++++ g     +av+ +g+   + + +   t++ lD +t
  KIR62004.1 145 GAVRWRFPVSGFRSDHMAVSpDGTrvAVSA-StSDTVHVLDINT 187
                 89*********5558899986554214444.359*******987 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.34
       PQQ_3   1 GevlWsvqlpgpvnssp......a 18 
                 G+ +W+ +++ +vnss+       
  KIR62004.1 209 GRHIWNMSIG-DVNSSLdapsqdW 231
                 6678999999.7999986555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3032.07
//
Query:       KIR62005.1  [L=265]
Description: trypsin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-50  170.1   0.8    6.8e-50  169.9   0.8    1.0  1  Trypsin    Trypsin
    1.3e-08   35.9   0.6    2.3e-08   35.1   0.6    1.3  1  Trypsin_2  Trypsin-like peptidase domain


Domain annotation for each model (and alignments):
>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.9   0.8   7.6e-54   6.8e-50       1     221 []      41     256 ..      41     256 .. 0.89

  Alignments for each domain:
  == domain 1  score: 169.9 bits;  conditional E-value: 7.6e-54
                 EBSSEETTTTSSTTEEEEEETTCEEEEEEEEEETTEEEEEGGGTTT...GGGEEEEESESBTTSCTTTEEEEEEEE..EEEETTEBTTTTTTTEEEEEE CS
     Trypsin   1 ivggeeaqkgsfpwqvslsvksgkhlCgGslisenwvlTAaHCvsn...asdvkvvlgehnlkksegkeqklkvek..vivhpnynpstldnDiallkl 94 
                 +vgg++a++g+fp++v ls+ +    CgGsl+s+  vlTAaHCv     +++++  lg   ++ +++   +++v+   v+ +p+y+ +   +D+al++l
  KIR62005.1  41 VVGGTPAAQGEFPFMVRLSM-G----CGGSLYSPTLVLTAAHCVGRtgaNTSITATLGV--VDLQSA--SRITVRSnyVYRAPGYTGNG--KDWALIRL 128
                 59******************.5....*******************98776777777775..555555..456666666**********9..9******* PP

                 SSSSTSBSSBHCCBBCSTTHTTSTTTEEEEEESSBSSTSS.BSSBEEEEEEEEEEHHHHHHHTTTT.STTTEEEEESTTSSSBCTTTTTTSEEEETTT. CS
     Trypsin  95 kepvklgdtvrpiclpaassslpvgttclvsGwgrtkekg.ksdtlqevevpvvsretcksaykgk.vtenmlcagakeggkdacqGDSGGPlvcsdg. 190
                 ++pv+ g ++ pi++  a +    g t +v+Gwg  +e g +++ l +++vp vs++ c+++y+g+ +  + +cag+  gg d+cqGDSGGP++++d  
  KIR62005.1 129 ATPVT-GLATLPIATTGAYD---SG-TFTVAGWGAAREGGaQQRYLLKATVPFVSDSVCSTNYGGDiIPAEEICAGYASGGTDTCQGDSGGPMFRRDAt 222
                 ***55.55666777777555...56.9*********99999999999***************88887999***************************** PP

                 ...EEEEEEEEESSSSCTTSEEEEEEGGGGHHHH CS
     Trypsin 191 ...elvGivswgkgcakgnrpgvytkvssyldwi 221
                    ++vGivswg+gca++n+pgvyt+vs++++ i
  KIR62005.1 223 nawIQVGIVSWGEGCARPNYPGVYTQVSYFASAI 256
                 ****************************999876 PP

>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.6   2.5e-12   2.3e-08       3     144 ..      64     220 ..      61     225 .. 0.71

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2.5e-12
   Trypsin_2   3 GflvgsdglilTnaHvvdsadgaav.kaikkkveeagadgrevpakvvaadp.....elDlAllkvssderaglpplplgpsealkggepvyvvGyplg 95 
                 G l+++++ +lT+aH+v+  +  +  +a+  +v    a+  +v+ + v++ p     ++D Al+++  ++ +gl++lp++++ a + g + +v G ++ 
  KIR62005.1  64 GSLYSPTL-VLTAAHCVGRTGANTSiTATLGVVDLQSASRITVRSNYVYRAPgytgnGKDWALIRL-ATPVTGLATLPIATTGAYDSG-TFTVAGWGAA 159
                 57788888.********776666666566666677777777777777777775555466*******.****************99999.*******888 PP

   Trypsin_2  96 geksg..........svssGivsgvvesesaasgegesfl..........qtdaatspGsSGGplfdsd 144
                 +e+++           + s         + ++++ g +++             ++t +G SGGp f++d
  KIR62005.1 160 REGGAqqryllkatvPFVSD--------SVCSTNYGGDIIpaeeicagyaSGGTDTCQGDSGGPMFRRD 220
                 88775566455333322222........444444455555555555667755555556********977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1847.55
//
Query:       KIR62006.1  [L=436]
Description: serine protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-10   40.3   2.6    1.3e-09   37.7   2.6    2.0  1  Peptidase_S8  Subtilase family


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   2.6   7.4e-14   1.3e-09       1     264 [.     181     409 ..     181     428 .. 0.68

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 7.4e-14
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS........HHHHHHHHHH-B..SSSSSB-SSTTSEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsie....HGthvAGiaaanapeegekngvapgakils 93 
                   g gv+v+v DtG+ +++     +  g ++l                ++ ++ +a    g  ++    HGt vAG++             apg+++  
    KIR62006.1 181 GAGVTVGVCDTGIWQQAGAWHPQWLGGSYL----------------PEADDLDALYVSGTTLApqggHGTFVAGVVRQA----------APGVRVDP 251
                   678888888888844444444333332222................222222222222222223456*******99888..........88888888 PP

                   EE-SSTTSB-HH..HHHHHHHHHHHHCT-SEEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  94 vkvldtsggsmetgteliraieeaaedkvdvinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitv 190
                    ++l++ g  +   ++++ a+   + ++v v+n+slg ++ ++++   +  +a+ ++    ++ vv++aGN g        +s    p+  + v++v
    KIR62006.1 252 EQALNPTGVGD---EAMLVAAMSRLGSQVSVVNLSLG-GFTQDDVPPLPLVNAVAALP--AQTAVVAAAGNAG--------SSRPAWPAALERVLAV 334
                   88888888887...6777777788889**********.77777777666433444444..59***********........6667899*9******* PP

                   EEESTTSSB...-TT--B-TT..........-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHH CS
                   xxxxxxxxx...xxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 191 gayttegki...apfSsrGpssd...gklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsa 264
                   +a++ +g i   a++S  Gp +d      + +   +G+  ++  ++q  ++     + ++ G+S+A+ +++g +A ++ a
    KIR62006.1 335 AAVSRDGGIlvpASYSGFGPWVDacaLGERDSTYVEGQLPLPGRPTQVFHG-----FATWAGSSFATGHVSGRLAAMMTA 409
                   ****8887645589******9875322223344444444444444444333.....*******************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2920.92
//
Query:       KIR62007.1  [L=210]
Description: RNA polymerase sigma factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-10   40.7   3.1    2.5e-10   40.0   3.1    1.4  1  Sigma70_r2     Sigma-70 region 2
    2.6e-06   26.8   0.0    5.6e-06   25.8   0.0    1.6  1  Sigma70_r4     Sigma-70, region 4
     0.0002   21.1   0.0    0.00082   19.2   0.0    2.2  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
    0.00095   18.8   0.3       0.04   13.6   0.0    3.3  3  Sigma70_r4_2   Sigma-70, region 4
     0.0013   18.2   0.0     0.0028   17.2   0.0    1.5  1  HTH_24         Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.055   13.5   0.0      0.088   12.9   0.0    1.4  1  HTH_16         Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   3.1   8.4e-14   2.5e-10       1      66 [.      24      87 ..      24      93 .. 0.92

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 8.4e-14
                HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHH CS
  Sigma70_r2  1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlR 66
                lv+ry plv+++ r    s+ada D+ Q ++lrl +++++++ +++ ++ awl +++r+++++  R
  KIR62007.1 24 LVRRYTPLVVAVIRAHGMSRADAADVNQTVWLRLVERLDQLR-DPE-ALAAWLATTTRRECYRLSR 87
                79****************************************.888.9*************99555 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.9e-09   5.6e-06       3      50 .]     133     181 ..     131     181 .. 0.97

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.9e-09
                 HHS-HHHHHHHHHHH.TTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   3 asLpererevlelrf.geglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 a+Lp+r ++ l l   + + ++ EIgerlg++ + +   ++r+lrkLR+
  KIR62007.1 133 AQLPPRCQHLLALLTaDPPVSYREIGERLGMPVGSIGPTQARCLRKLRA 181
                 89**********************************************5 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.7e-07   0.00082       7      29 ..     141     163 ..     140     180 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.7e-07
  HTH_AsnC-type   7 kILeaLqedaRisyaeLAervGl 29 
                     +L++L +d+  sy+e++er+G+
     KIR62007.1 141 HLLALLTADPPVSYREIGERLGM 163
                    69********************8 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.33     1e+03      21      34 ..      35      48 ..      32      49 .. 0.80
   2 ?   -2.0   0.0      0.98   2.9e+03      14      25 ..      78      89 ..      76      90 .. 0.83
   3 !   13.6   0.0   1.3e-05      0.04       1      43 [.     125     168 ..     125     179 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.33
                  HHHTS---HHHHHH CS
  Sigma70_r4_2 21 lryleglsykEIAe 34
                   ++ +g+s +++A 
    KIR62007.1 35 VIRAHGMSRADAAD 48
                  57899*****9996 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.98
                  HHHHHHHHHHTS CS
  Sigma70_r4_2 14 rqreifllryle 25
                   +re++ l++l+
    KIR62007.1 78 TRRECYRLSRLD 89
                  689999999986 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 1.3e-05
                   HHHHHHHHTTS-HHHHHHHHHHHTS.---HHHHHHHHT--HHHH CS
  Sigma70_r4_2   1 rqalrealaeLperqreifllryle.glsykEIAellgisegtV 43 
                   rqalre  a+Lp+r +  + l   +   sy+EI e+lg+++g++
    KIR62007.1 125 RQALREGFAQLPPRCQHLLALLTADpPVSYREIGERLGMPVGSI 168
                   6888888899999999988776555359*************997 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   9.5e-07    0.0028       8      33 ..     142     167 ..     140     168 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 9.5e-07
      HTH_24   8 ILelLqknprisqreLAerlglSpst 33 
                 +L lL ++p  s+re+ erlg++++ 
  KIR62007.1 142 LLALLTADPPVSYREIGERLGMPVGS 167
                 799*******************9986 PP

>> HTH_16  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.9e-05     0.088       3      28 ..       9      34 ..       7      63 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.9e-05
      HTH_16  3 vieaAvnGDeeAieeiLkhYegyIrk 28
                ++ aA+ GDe A +e++++Y ++  +
  KIR62007.1  9 LVAAASGGDEAAWAELVRRYTPLVVA 34
                7899******************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1562.19
//
Query:       KIR62008.1  [L=1817]
Description: acetyl-CoA carboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-61  205.8   0.0    8.9e-61  205.1   0.0    1.4  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    2.1e-35  121.1   0.0    6.3e-35  119.5   0.0    1.9  1  Biotin_carb_C    Biotin carboxylase C-terminal domain
    1.4e-33  116.3   0.1    2.5e-33  115.5   0.1    1.3  1  Carboxyl_trans   Carboxyl transferase domain
    9.4e-33  113.1   0.0    2.4e-32  111.7   0.0    1.8  1  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    6.6e-13   47.8   0.0    2.7e-12   45.8   0.0    1.7  2  ACC_central      Acetyl-CoA carboxylase, central region
    1.1e-09   38.0   0.0    2.8e-09   36.7   0.0    1.8  1  Biotin_lipoyl    Biotin-requiring enzyme
    3.7e-09   36.4   0.0    1.1e-08   34.9   0.0    1.7  1  ATP-grasp        ATP-grasp domain
    9.8e-08   31.8   0.0    1.9e-07   30.9   0.0    1.4  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    0.00016   21.7   0.0    0.00029   20.9   0.0    1.4  1  ATP-grasp_3      ATP-grasp domain
      0.007   16.5   0.1      0.074   13.2   0.1    3.0  1  LAL_C2           L-amino acid ligase C-terminal domain 2
  ------ inclusion threshold ------
      0.025   14.0   0.0      0.058   12.8   0.0    1.6  1  ATP-grasp_5      ATP-grasp domain
      0.025   15.3   0.2        4.8    7.9   0.0    3.4  3  HlyD_3           HlyD family secretion protein


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.1   0.0   5.9e-64   8.9e-61       1     209 [.     120     327 ..     120     329 .. 0.98

  Alignments for each domain:
  == domain 1  score: 205.1 bits;  conditional E-value: 5.9e-64
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  Dk  ak ++++++vpv+p s ++vetl++ala+a++igyP ++ka++g+GG+G rv+++++ela++++++++ea+ afg+  v++e+ ++g +++Ev+
   KIR62008.1 120 DKIGAKLIAEEVGVPVAPWSRGAVETLDDALAAAERIGYPLMLKATAGGGGRGIRVVTSSAELADAYERTSQEAARAFGSGVVFLERLVTGARHVEVQ 217
                  8999999******************************************************************************************* PP

                  EEEETTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HH CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlv 196
                  v++D + ++  ++ r++s+q+r+qkvie+  s++L++e+  +l+++a +++ +vg++ga+tvefl++p ++ + ++EvNtRl+ve++++e + G+dlv
   KIR62008.1 218 VIADGA-TAWALGVRDCSVQRRNQKVIEESASPVLSPEQAAELKASAERLAVAVGYRGAATVEFLYHPGDRLFAFLEVNTRLQVEHPITEVTCGFDLV 314
                  ****97.56789************************************************************************************** PP

                  HHHHHHHTT--GC CS
  CPSase_L_D2 197 keaakialgekLe 209
                  k+++++a+g +L+
   KIR62008.1 315 KAQLHVASGGRLD 327
                  *********9996 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.0   4.2e-38   6.3e-35       1     108 []     339     448 ..     339     448 .. 0.98

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 4.2e-38
                    EEEEESEETTTTTEE--CE-SEEE---STTEEEEE---TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-E..EESS-BSHHHHHHHHH-H CS
  Biotin_carb_C   1 eaRinaEdpeknflpssGkvtelelpegpgvRvdsgveegsevspyyDsllaKlivhgetreealarlrraLaelr..ieGvktnieflrailede 94 
                    eaR+naEdp+++f+ps+G++++l+lp+gpg+Rvd+gv++g+++++++Ds++aK+i++g++r+eal rlrra+ae++  ieG +tn +f+ ++l+++
     KIR62008.1 339 EARLNAEDPDRDFAPSPGRIARLDLPAGPGIRVDTGVSAGDTIPADFDSMIAKIIAYGRDRHEALGRLRRAMAETTviIEGGATNKSFVLDLLDQP 434
                    89***********************************************************************997668***************** PP

                    HHHHT---TTTCCC CS
  Biotin_carb_C  95 efakgeldtkflee 108
                    e++++++dt+++++
     KIR62008.1 435 EVIDASADTGWIDR 448
                    ************85 PP

>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.1   1.6e-36   2.5e-33      43     477 ..    1308    1813 ..    1282    1816 .. 0.83

  Alignments for each domain:
  == domain 1  score: 115.5 bits;  conditional E-value: 1.6e-36
                      ..EEEEEEEESBE..TTEEHHHHTTEEEEESSTTSGGGCEEECHHHHHHHHHTEEEEEEEEE-ESSSGHHSSHHHHHHHHHHHHHHHHHHHCS CS
  Carboxyl_trans   43 lprdgvvtgsGav..iGravevvaqdktvlggslgpakgekllkaqeeaikagepligindsgGaegriqegveslrgsGkifgenskasgeI 133 
                          gvvt   ++  +G++ +v+  d t+  g+l++ + +++++a ++a + ++pl     s+Ga   ++ g+e+++ ++   ++ ++  ++ 
      KIR62008.1 1308 ALVAGVVTTRTTRypEGVTRVVLLGDPTKSLGALSEPECRRVIAALDLAESMRVPLEWYALSSGARISMESGTENMDWVAAALKRIVEFTQDG 1400
                      5556777777776446*************************************************6679**********************77 PP

                      -EEE.EESSEEETHHHHHHHHTS......EEEEETTEEEEESSTHHHHHHHHSSCC-SSCHHHHSHHHHTTTTSSSEEESSHHHHHHHHHHHH CS
  Carboxyl_trans  134 pqis.lvtgrcaGggaYlpalgd......rvimveetskifltGpdvikkvlgreevtseelgGatqhmtksGvahltaeddeealelirkll 219 
                        i  +v g ++G   Y  a ++       v+ +   s+++ltG + +    g    ++   gG +++m  +G a++ a +  +a + ++   
      KIR62008.1 1401 GEINiVVAGINVGAQPYWNAEATmlmhtkGVLVMTPDSAMVLTGKQSLDFSGGVSAEDNFGIGGYDRVMGPNGQAQYWAPNLTAARDVLMAHY 1493
                      777515789********887554111111343344459************9997777777899*****************9998888776655 PP

                      TTS-SSTTSGGSS----ECSSGSSSH......................HCS-CTTTS---HHHHHHCEEC.TTC-EEESTTS..STTEEEEEE CS
  Carboxyl_trans  220 sylPkkasnnresaPivetadepdrd.......li.............eivPdnakkpyDvreviarlvd.egeFlEikegy..AktvVvGfA 289 
                            +  + + + +++t+d++drd       +              e  Pd  kkp+D+r+v+++l d +   lE  +g   A+t Vv   
      KIR62008.1 1494 DHTY--VAPGESGPRRATTTDPVDRDvsgfphvMAgsdfttvgeifsaEANPD-RKKPFDIRSVMRALSDqDHPVLERWAGMadAETAVVQDV 1583
                      4443..22223345556778999999888776611555666777788899999.8***************43445666666533589****** PP

                      EETTEEEEEEEE--S...............EEETTEE-HHHHHHHHHHHHHHHHTT--EEEEE-BSEE--SHHHHHTTHHHHHHHHHHHHHT- CS
  Carboxyl_trans  290 rlgGipvGvvAnetr...............veaGqvlfidsavKaarfirlcdaenlPlviladvrGflvGqrqeyggilkhGaklvdalaea 367 
                       lgG pv  ++ e r                 aG  lf+ s+ Kaar+i++ +  n Plv+la+  Gf+++ + + +  l +Ga +  a+++ 
      KIR62008.1 1584 HLGGMPVCLLGIESRsvprrgfpptdgpdtYTAG-TLFPRSSKKAARAINAAS-GNRPLVVLANLSGFDGSPESMRKLQLEYGAEIGRAIVNF 1674
                      **********************************.***************876.567************************************ PP

                      -S-EEEEE-TEEEHHHHHTTTGGGSTTTTEEETTT-EEESS-HHHHHHHHSHHHHHHHHHHH.......HHHHHH.................. CS
  Carboxyl_trans  368 kvPkitvilrkayGGayvvmdskingadlvaawptariaVlgpegaveilfrkekaaaemer.......kdlaae.................. 435 
                      + P++  ++    GGa+vv + + n++ +v+a + + ++Vlg++ a++++f+ + +a +++        +    +                  
      KIR62008.1 1675 RGPIVFCVISRYHGGAFVVFSKALNPNMTVLALEGSFASVLGGAPAAAVVFSGDVNARTAADprvrdleA----Rvaaasgteraaltaelde 1763
                      ********************9999999899**********************999888877677855551....4555566666677777888 PP

                      ........HHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHTTSSSEE CS
  Carboxyl_trans  436 ........rkkklkeyeeellnpyvaaargfaDavidpsetraklviale 477 
                              +  ++++  + + n+ +a+++g +Davi+++e+r +++ a e
      KIR62008.1 1764 lrssvraeKLGEVAAEFDRVHNIQRAVEVGSVDAVIRAAELRPRIIEAIE 1813
                      8888855556666667777899*********************9998765 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.0   1.6e-35   2.4e-32       1     110 []       1     115 [.       1     115 [. 0.97

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 1.6e-35
                    ---EEEE---HHHHHHHHHHHHHT......T-EEEEEEEGGGTTSHHHHHSSEEEEEESSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTTT-HH CS
  Biotin_carb_N   1 kikkvlianrGeiAvriiravrel......gietvavyseedanslhvreadeavelgpasasesYlniekivkaakesgadavhpGyGflsEnae 90 
                    ++++v+i+nrGe+A+r+i+avr+l      +ietva++++ d+++++vread ++ lgpas ++ Yl+++++ +a+ e+gada ++G+Gf++E+++
     KIR62008.1   1 MFSRVAIVNRGEAAMRLIHAVRDLaaetgtRIETVALHTDVDRAATFVREADLSYDLGPAS-ARPYLDLKALERALVETGADAAWVGWGFVAEDPA 95 
                    689******************************************************9776.569******************************* PP

                    HHHHHHHTT-EESSS-HHHH CS
  Biotin_carb_N  91 faeaveeagivfiGPsaeal 110
                    fae++e+ g++f+GPsa+a+
     KIR62008.1  96 FAELCERVGVTFVGPSADAM 115
                    *****************998 PP

>> ACC_central  Acetyl-CoA carboxylase, central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.26   3.9e+02     202     347 ..     811     955 ..     808     972 .. 0.83
   2 !   45.8   0.0   1.8e-15   2.7e-12     471     658 ..    1012    1198 ..    1006    1205 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.26
                  HHHHHHHHHHTHHHHHHHHHHHHHHCHCCCCHTCCCCCCCHHHHHCCCT--STTTHHHHHHHHHHHHH.HSSHHHHHHHHHHHHHHHHHHSBSSTTSS CS
  ACC_central 202 kVvdivlShsqvskKnkLilalldelkpekpssselakelrevLkkLasLesketskVaLkArevLiq.aklPsleerknqmesilkssvdesgyges 298
                  +V++i l+ +++++  +++ +ll e  +e p    l +    +L++L++  + +   Va  Ar v  +   +P l+++ +++ +++++++ +    + 
   KIR62008.1 811 AVFRIFLAQQRAAADATVVATLLREWLREPPPDDVLREPAGLALERLVAATQVRFPVVADLARGVVFAwLGQPLLRRNRARVYAAVRRHLRHLDA-HP 907
                  7999*********************99777777788999999*********************998873689************99998888765.33 PP

                  -SS--HHHHHHHHT-SS-SHHHHCCCCCSSSHHHHHHHHHHHHHHHTTT CS
  ACC_central 299 krepslevlkeLidsettvfDvLpsfFyhsdevvrlaalevYvrraYra 347
                  +   ++e++ e++ s+  ++ +L + +   d+  +   lev  rr Y  
   KIR62008.1 908 DAPDRAERVAEMVRSTEPLVRLLGQRLVR-DHLDNAVMLEVLTRRYYGN 955
                  47788999999999999999999998863.4444555688888998865 PP

  == domain 2  score: 45.8 bits;  conditional E-value: 1.8e-15
                   EEECETTT-SCCC.CCCCCHHHHHHCCCHHHHTTEEEEEEEE--T..S---EEEEEET...TTEEECTTCTS-CCCHHHCTCCCGTTEEEEEE--S CS
  ACC_central  471 vairsaenaddee.llekleeilkelkeeLeaagvrrvTfivgrk..geyPkyfTFre.rdeykEdeiiRhiEPalafqLELnrLsnfdikpvpte 562 
                   v+++++++ +d++ +++ l+e++  +      a+vrr+T +v+ +  + +   fTFr  ++  +E++++R + P +a  + L+rL++fd++ +p++
   KIR62008.1 1012 VYLAWERQPEDSDaMAAALHEVIGAYP---LPAQVRRITATVAGRsgAVMHHHFTFRPsTTGMAEERLVRFLHPYIAQRMQLERLRKFDLTRLPSS 1104
                   566666666655446777777777776...789*******9987557888899****98789********************************** PP

                   STTEEEEEEEESS-T....T-EEEEEEEEE-BSS--TTS-HHCHHHHHHHHHHHHHHHHHHH.....C--TTBSSEEEEEEEEEEESS-HHHHHHH CS
  ACC_central  563 nrqiHlYeavakeeekkevtdkRfFvRaiirhsdlrdkeasaeyliseaerlllealdeLEva..skkeakrtdlnHiFlnfvpeveldpeeveea 656 
                   +++++l+  va+e++    +d+R+ + a +r  +   +     +   +ae ++ + ld++  a   ++++kr + n i + + p  +++  e+e +
   KIR62008.1 1105 DEEVYLFRCVARENP----SDERLVAFAQVRDLTELREHDGRLVSLPTAEDTVATCLDSIRRAqsRRPSNKRVNTNRIVVYVWPPSDITRAELEMI 1196
                   ***************....99998888888877666666666677778899999999999999877899999999999999999999988888876 PP

                   CC CS
  ACC_central  657 vr 658 
                   ++
   KIR62008.1 1197 AG 1198
                   65 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.9e-12   2.8e-09       3      73 .]     588     653 ..     583     653 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.9e-12
                    EEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl   3 iksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73 
                    ++sP+++ +v+        +vG +V+ag +++++e+mKme+ + ap + ++ke  v++G++ve+g +l+++
     KIR62008.1 588 VRSPAPALVVA-----TPLEVGAEVEAGAPVLVLESMKMETVLRAPFRARLKECAVSVGSQVETGAPLLRL 653
                    66777777777.....899*************************************************976 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   7.1e-12   1.1e-08       2     156 ..     129     294 ..     128     299 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 7.1e-12
                 HTTT--B-EEE..EECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEE..ETTC CS
   ATP-grasp   2 eklglpvprfl..aveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvr..saeG 88 
                 e++g+pv+++   ave+ +++ +aae++g+p+++K ++ g  G+G  vv s+++l +a e +        +++ v +E  v   + + v v+   ++  
  KIR62008.1 129 EEVGVPVAPWSrgAVETLDDALAAAERIGYPLMLK-ATAGGGGRGIRVVTSSAELADAYERTsqeaarafGSGVVFLERLVTGARHVEVQVIAdgATAW 226
                 67899999997557999******************.89999***************999998888999999999*******988777666665113333 PP

                 -EEE--EEEEEEETTEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCT.EEEEEE CS
   ATP-grasp  89 etafypvvetvqedgilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledge.llvnEl 156
                 +  + +   + ++++++++s  p  +s +++++ ++ a++++ ++g+ G  +vE+ +   ++   + E+
  KIR62008.1 227 ALGVRDCSVQRRNQKVIEESASPV-LSPEQAAELKASAERLAVAVGYRGAATVEFLYHPGDRlFAFLEV 294
                 344455555666777888999988.6778999**********************988744444445555 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   1.3e-10   1.9e-07       3     174 ..     129     296 ..     127     297 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.3e-10
                      HHTT--B--EEEEETTHHCH-H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-SC......EEEEE--.ESEEEEEE CS
  Dala_Dala_lig_C   3 kaaGlpvvpyvvlekeeakeekkellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkydek......vlvEeai.egreieva 89 
                      +++G+pv+p+     e+   +      +  e++gyp++ K+   G   G+  v+s +el++a e+  +  ++      v+ E+ +  +r +ev 
       KIR62008.1 129 EEVGVPVAPWSRGAVETLDDAL-----AAAERIGYPLMLKATAGGGGRGIRVVTSSAELADAYERTSQEAARafgsgvVFLERLVtGARHVEVQ 217
                      5678888888654444444444.....6789*******************************998877665433333389*****999****** PP

                      EEETSS.CEEEEEEEEE-SSSSS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTE.EEEEEEES CS
  Dala_Dala_lig_C  90 vlgnek.levsevgeivvkkgfydyeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteege.ivlnEvNt 174
                      v+ +++   ++ v +      + + ++k ++++a+      l++e+++++++ a +   a++ rG a v f+++  ++ + + EvNt
       KIR62008.1 218 VIADGAtAWALGVRDCS----VQRRNQKVIEESAS----PVLSPEQAAELKASAERLAVAVGYRGAATVEFLYHPGDRlFAFLEVNT 296
                      ***76623344444444....44567888755443....45899*****************************6655516799***9 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     2e-07   0.00029      26     159 ..     152     299 ..     121     301 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2e-07
                  ESS--SSSEEEEESS-------B--SS--TTE...................EEEE---S.EEEEEEEEE.SSSEEEEEEEEEEEET....TEEEEEEE CS
  ATP-grasp_3  26 eleeeekklvvKprdGaggesvrvveekeeaeaaieeve............lvqefieG.kplSvsllsdgekvlvlavnrqliekaekefvyaGnvt 110
                   +e+  ++l +K   G+gg ++rvv    e+  a e ++             + + + G +++ v++++dg ++  l v +  ++++++  v   + +
   KIR62008.1 152 AAERIGYPLMLKATAGGGGRGIRVVTSSAELADAYERTSqeaarafgsgvvFLERLVTGaRHVEVQVIADGATAWALGVRDCSVQRRNQ-KVIEESAS 248
                  4567799*********************999988888778999******97567777774799*********************98666.66666777 PP

                  S----H.HHHHHHHHHHHHTTSTT--EEEEEEEEESS...SEEEEEEESS-- CS
  ATP-grasp_3 111 pietel.keevvelaeevvekleglaGyvGvDlvlkd..eepyviEvNPRlt 159
                  p+   + + e+ + ae++  ++ g +G + v+++++       ++EvN Rl+
   KIR62008.1 249 PVLSPEqAAELKASAERLAVAV-GYRGAATVEFLYHPgdRLFAFLEVNTRLQ 299
                  7665554999************.***********8763266789******97 PP

>> LAL_C2  L-amino acid ligase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   4.9e-05     0.074       5      78 .]     352     418 ..     351     418 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.9e-05
      LAL_C2   5 aprpGrlkaveGleearalpgvveveltvkpGdevrpprssgdrlGyviatgdtaeeaeaaaeeaaaeirieve 78 
                 ap+pGr+++++      a pg+ +v+  v++Gd++  p +  + ++ +ia g+++ ea+ ++++a+ae ++ +e
  KIR62008.1 352 APSPGRIARLDLP----AGPGI-RVDTGVSAGDTI--PADFDSMIAKIIAYGRDRHEALGRLRRAMAETTVIIE 418
                 6778888888766....77887.69999*******..999999*************************999876 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.9e-05     0.058       7      55 ..     116     166 ..     111     220 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.9e-05
  ATP-grasp_5   7 rtlLteaeakelleaygipvvetrl..assaeeaveaaeeigypvvlKivs 55 
                  r+l ++  ak + e +g+pv++     +++ ++a++aae+igyp  lK + 
   KIR62008.1 116 RKLGDKIGAKLIAEEVGVPVAPWSRgaVETLDDALAAAERIGYPLMLKATA 166
                  555667778999**********99888*********************875 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2      0.11   1.7e+02       1      30 [.     587     616 ..     587     620 .. 0.93
   2 ?    7.9   0.0    0.0032       4.8       1      33 [.     624     656 ..     624     680 .. 0.89
   3 ?   -2.1   0.0       4.2   6.3e+03      38      85 ..    1010    1055 ..     996    1065 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.11
      HlyD_3   1 tlrApvdGvvvelnveegevvqagdellei 30 
                 ++r+p    vv+ ++e+g  v+ag+++l +
  KIR62008.1 587 VVRSPAPALVVATPLEVGAEVEAGAPVLVL 616
                 69************************9976 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0032
      HlyD_3   1 tlrApvdGvvvelnveegevvqagdelleiipp 33 
                 +lrAp+  +++e  v++g+ v+ g++ll++ p 
  KIR62008.1 624 VLRAPFRARLKECAVSVGSQVETGAPLLRLEPL 656
                 69***************************9994 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 4.2
      HlyD_3   38 veakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvdaktg 85  
                  ++++++ ++ +  ++  +++ l+      y+l++++ ri++tv  ++g
  KIR62008.1 1010 ADVYLAWERQPE-DSDAMAAALHEV-IGAYPLPAQVRRITATVAGRSG 1055
                  555666666665.444444444443.234799*******999865554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1817 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.45
# Mc/sec: 12183.40
//
Query:       KIR62009.1  [L=946]
Description: hypothetical protein TK50_31860 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-26   91.8   0.0    9.2e-15   54.3   0.0    2.3  2  Condensation  Condensation domain


Domain annotation for each model (and alignments):
>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   3.1e-13   5.6e-09      33     262 ..      61     275 ..      29     354 .. 0.77
   2 !   54.3   0.0   5.1e-19   9.2e-15       6     338 ..     498     822 ..     494     835 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 3.1e-13
                   EEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHHHHHHHHHHHTC--SCCCS-SEEEEEEESSTT CS
  Condensation  33 lklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeeaieefaqkdlqepfdLekgpLfraalfkiaen 129
                   + ++ + d++r  +al +l+ rh +LRt+ +   +gep+Q    + ++++ v+   d+ + +    + ++a + +   fd +++ ++raa+++++++
    KIR62009.1  61 VSARAGADPDRAVRALGALMGRHASLRTRVRVV-DGEPRQQEAATGHLPVLVVPGVDDGAAA----ARAAADRLADVAFDHAAEWPVRAAVVTVDDR 152
                   55667899**********************655.******9888888888777666655555....45555555557******************** PP

                   EEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHHHHHHHHHHH......S---BSS---SS---S- CS
  Condensation 130 rlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdlekeeaYWseqlegelpvlqLpkdkarpakrsfkad 226
                      ++l + H  vD+   +++lrdl  l    ++   l++p+ ++ +d a   q  +  ++  ++ aYW   +++ lp + Lp+   +    +++  
    KIR62009.1 153 VRQVVLVFSHSTVDAHAAEVVLRDLRLLL---LR-GRLDTPPGPQSADVARL-QHTADVRRSARTVAYWLREFDR-LPAAPLPDG-GPGLTPRLR-- 240
                   **************************998...44.44577777777888876.777999999************7.999999998.333333333.. PP

                   EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHH CS
  Condensation 227 rlsikldeeteeklrklakeqgvtlndvllaalgll 262
                      + +++++  + r +a+ + v+   vlla +g+l
    KIR62009.1 241 -RGVLVSSAVDVASRMIAARHRVSTSAVLLAGVGAL 275
                   .44555666777778888888888888888887776 PP

  == domain 2  score: 54.3 bits;  conditional E-value: 5.1e-19
                   EXXCCHHHHHHHHHHSSSSSTTEEE..EEEEE..ES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHH CS
  Condensation   6 plspaQkrmwflekleeessaynmq..avlkl..egeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeea 98 
                   pl+  Q+ mw + +++e++++ ++    +l +  +  +d+ r  +a+ +l++rh++LRt+ +   +ge +Q  + +  +++ v  ++ ++++ + +a
    KIR62009.1 498 PLTWGQRAMWRAVEVFESPRHSVLNlrRILAVsrRADVDVARAVRAVAALVRRHESLRTRVR-SVDGELYQSATGAGRLPVLVYPVASAAADPDGRA 593
                   78888988999999988777765541145555005566667999*****************6.55*********99999998888887777777666 PP

                   .HHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHH CS
  Condensation  99 .ieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdleke 194
                    ++++a +     fd +++ ++raa+++++++   ++l + H  vD    +++lrdl  l        ++p+p  ++  d ae+e +  e ++  ++
    KIR62009.1 594 aASALAARLGDPRFDHAAEWPMRAAVVTVDDRVRQVVLVFSHSTVDFHAAETVLRDLRMLV----LRGSVPTPAGPQSLDIAEREGD-GERRRGDRA 685
                   5788888888999**********************************************99....4444566666666******777.8888899** PP

                   HHHHHHHHH......S---BSS---SS---S-EEEEEE.EE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC CS
  Condensation 195 eaYWseqlegelpvlqLpkdkarpakrsfkadrlsikl.deeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdier 290
                    aYW+  +     ++ L +   +    +++    + +l +++++++ r +a+ +gv+  +vllaa +++L    g+d   v t++ +R ++  + + 
    KIR62009.1 686 VAYWTRHFPD--LTVGLFDPVGPGLTPRYR----RGSLvSPAVHHAARLVAARHGVSNATVLLAATAAVLAADGGGDVCGVFTMVNNRFQP--EYDG 774
                   *******997..223355553333333444....33334999************************************************9..8888 PP

                   --SS-EEEEEE.EEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHH CS
  Condensation 291 mvGlFvntlPl.ridvkeaktfselikrvkedllkaephqgypleeLvk 338
                   ++   +n + l rid+++  +f+el++r +++ l+a++h +y+  eL +
    KIR62009.1 775 AISK-LNQIGLcRIDLADRPAFAELLTRARTASLDAYRHAYYDPRELER 822
                   8866.5555544******************************9888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (946 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 6199.96
//
Query:       KIR62010.1  [L=501]
Description: AMP-dependent synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-70  236.6   0.2      5e-70  236.2   0.2    1.1  1  AMP-binding    AMP-binding enzyme
    4.4e-17   62.8   0.6    1.2e-16   61.4   0.6    1.8  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.2   0.2   5.6e-74     5e-70       2     422 ..      19     402 ..      18     403 .. 0.85

  Alignments for each domain:
  == domain 1  score: 236.2 bits;  conditional E-value: 5.6e-74
                  HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSS..HHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESE CS
  AMP-binding   2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpns..pewvvallailkaGavvvplnptltaeelayiledseakv 97 
                  +++ a +pd+va+   ++ + lT+++  + + ++AagL  +Gv++gdrV+++   +    + va+ ++l+aGav+vpl+++l a +l ++l++++a +
   KIR62010.1  19 AWRTALHPDRVAVEV-AGVRALTFADWSSGAAAVAAGLHGRGVRPGDRVGLVFGARdwTGFAVAYCGVLRAGAVAVPLSDRLAAGQLGHALAHCGAAA 115
                  5777889******54.68*********************88*********99655411779************************************* PP

                  EEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHH CS
  AMP-binding  98 liatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslklet 195
                  +++           +a+a+++a++   v  a++l+        ++++++a    ++++++p dla i+YTSGTTG+PKGV  sh+nl+a + ++  ++
   KIR62010.1 116 VVH----------GDATAAPPAPAGLPVWRAADLA--------AGPADAA----DPPPVRPGDLAQILYTSGTTGRPKGVAASHANLTAGAPTH--PR 189
                  **2..........2233334444444444433322........2223332....34579*******************************9996..66 PP

                  CSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS CS
  AMP-binding 196 rfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllgge 293
                  r  l +++++l+   +   +g+++  ++  ++ +++ l p++++    ++++l+++ +  ++++vP+++  ll+sgal+     +d+s+++l+ + ++
   KIR62010.1 190 RLALAHSERFLHAFAIGTNAGQTMLFNALTAKAGALTL-PTFTP---VRFARLVQTPGTGTLFVVPSMAIELLDSGALR----GRDCSGVHLIGSTAA 279
                  6778889***************6666666666666666.54555...45789**********************99998....67************* PP

                  -EBHHHHHHHHHHHTC.EEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEE CS
  AMP-binding 294 plspellrffralfge.evlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafd 390
                  +l+p+++ ++ a f+e ++++ Y  TE++++ t+ +  +d +++  vG+p+ g +++++D + g+p+p+g++G +++r p   + Y+++++a++ +f 
   KIR62010.1 280 ALPPAVAARLAAAFPEaTIVNYYTSTEAAPAQTT-M-IWDPARRDAVGRPVGG-QLRVADAD-GNPLPPGTTGDVWLRAP-YPRAYYRDDAANRATFR 372
                  ****************99*************984.3.334456789****866.*******9.*****************.6799****9*******8 PP

                  ETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 391 segrwlrTGDlgrldedGyleivgRkkdlikl 422
                    ++w+r GD+gr+d+dGyl++++R  d+ik+
   KIR62010.1 373 --DGWVRMGDVGRIDADGYLYLTDRHQDVIKS 402
                  ..57**************************97 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.6   1.4e-20   1.2e-16       1      76 []     411     489 ..     411     489 .. 0.91

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 1.4e-20
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE------...HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsea...leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    evE+al +hp VaeaaVvGvp++v G+a++a Vv ++  +a   +  +L+a+++++l++y  p ++ +++elp+++ GK
     KIR62010.1 411 EVEAALHEHPLVAEAAVVGVPHPVLGSAVAAAVVARPHADAaglTLPALRAFLADRLADYQLPARLLLLAELPRNEGGK 489
                    8*********************************8644322367899****************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3437.63
//
Query:       KIR62011.1  [L=1037]
Description: hypothetical protein TK50_31875 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-95  319.1   0.1    4.7e-95  318.7   0.1    1.2  1  AMP-binding    AMP-binding enzyme
    3.4e-40  138.1   0.0      1e-39  136.5   0.0    1.7  1  Condensation   Condensation domain
      5e-19   68.4   0.2    1.6e-18   66.8   0.1    2.0  2  PP-binding     Phosphopantetheine attachment site
    5.4e-10   40.1   1.9    1.7e-08   35.3   0.0    3.6  3  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.7   0.1     1e-98   4.7e-95       1     423 []     450     850 ..     450     850 .. 0.88

  Alignments for each domain:
  == domain 1  score: 318.7 bits;  conditional E-value: 1e-98
                  HHHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEE CS
  AMP-binding   1 leeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvl 98 
                  +++++a  pd+va+vd  ++ +l Y+ ld+++ rlAa Lr +Gv++g+ Va++l++s++ vv++la+l+  a++ p++p+ ++++ + +l+d+ ++++
   KIR62011.1 450 FAARVAADPDAVAVVD--GDVRLGYARLDAAAGRLAALLRGRGVGPGSLVAVALDRSWRTVVTMLAVLRCRAAYLPVDPGHPPARQRLVLADAAPTLV 545
                  5678899*********..9*********************88******************************************************** PP

                  EETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHC CS
  AMP-binding  99 iatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletr 196
                  +  + ++      + +a ++a   v+ ld+ +l        +++  ++     +++++++ dlay++YTSG+TG+PKGV + h++l++ +  +  ++ 
   KIR62011.1 546 V--TAAA------S-DAGPDAGPPVLALDEVDLF-------AAGHTDV-----DADAPTAADLAYVLYTSGSTGRPKGVAVGHGALTNLLLGM--RDL 620
                  *..4222......2.3334556667777743322.......2223333.....2335789********************************6..566 PP

                  SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHC..HHHHCCGTT-SEEEEES CS
  AMP-binding 197 fklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalka..akkakdlsslrlvllgg 292
                   ++++  ++l+  + +++++  +e++l+l+ G++vv++++ +ald +++l+l+++ +vt+ +++P+ ++ ll++g  +a  a++a   +sl   ++gg
   KIR62011.1 621 LDAGPAHRWLHLTSPSFDISA-VEVFLPLVTGGRVVVASGVSALDGAAVLRLVRDAGVTHAQATPSGWRVLLAAGLGAAdtAEAAGAAGSLVA-VAGG 716
                  667899**************8.***********************999*********************998854444234777778888776.58** PP

                  S-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEE CS
  AMP-binding 293 eplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafd 390
                  e+l+ +l+r++ra++ + +++gYG+TE+t+ +t +++   ++ + ++G+plp+v+++++D + ++pvp g++Gel++ g+g++ gY +++++tae+f+
   KIR62011.1 717 EALPVALARELRARTAR-LVNGYGPTEATVYAT-VEDVPADPDTVTIGRPLPNVRAYVLDAA-LRPVPVGVPGELYLAGAGLAVGYRGRDDLTAERFV 811
                  **************987.**************9.555555567889***************9.*********************************** PP

                  E.....T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 391 s.....e.grwlrTGDlgrldedGyleivgRkkdliklr 423
                  +       gr++rTGD +r+ +dG+l ++gR++d++k+r
   KIR62011.1 812 PdpfgaAdGRLYRTGDRCRWLPDGRLDFLGRADDQVKVR 850
                  7899873467***************************96 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   0.0   2.3e-43     1e-39       4     455 ..       7     429 ..       5     431 .. 0.90

  Alignments for each domain:
  == domain 1  score: 136.5 bits;  conditional E-value: 2.3e-43
                   EEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-.TT-----EEEE-T..TSSSHHHHH CS
  Condensation   4 eyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvil.eerevelevleisdleeseeeeai 99 
                   ++  + aQ  +wf+e+   + +ay+m++ +++   ld  +l +a  ++ +rh++L  + + +++g+p +      ++v++      ++++ +    +
    KIR62011.1   7 TAEATYAQHAVWFTEQAGVAGTAYHMALGVRFAADLDRRALVEACAAVADRHPVLGARVVTDADGTPGLAPAdGRASVTF-----GEWTDAR---VA 95 
                   567899**************************************************************998834445555.....4333333...45 PP

                   HHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--.HHHHHHHHHHHHCSHHHHHHH CS
  Condensation 100 eefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktp.Ykdyaeweqqyleskdlekee 195
                   ee+a+     p dL+ gpL r+ l++ a+ r+lll+ vHH+ +DG+S  +l+rdla++Y++++ g + ++ + t+ Y+  a +e++ +   dl  ++
    KIR62011.1  96 EELAR-----PHDLRVGPLARFTLLTAADGRHLLLVCVHHLAFDGMSKDVLARDLADAYAAALAGTSAQAAPHTDgYAGDAAAERD-RVAVDLPAAR 186
                   66777.....********************************************************************99999888.66777***** PP

                   HHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC-- CS
  Condensation 196 aYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdiermv 292
                   ++W+      ++ + Lp   +r + +   +  ++++l++++ + + ++a   gvt  ++llaa+++lL++y + + + vg++ s R  e     + v
    KIR62011.1 187 EFWARHRPD-AADVVLPGL-RRVPTGAEPGAVVAVALPADLVDGVGRVAGRLGVTRFELLLAAVHALLHRYGN-RGVPVGVTLSTRAPE---QADRV 277
                   ****99997.66789****.99999999999****************************************65.6799********999...45669 PP

                   SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE...E.... CS
  Condensation 293 GlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvssveaeees 389
                   GlFvn lP+  d  +a +f+e  ++v+++l+++++ + +pl   v+ l+   +     L  +++ +          + + +++    v+       +
    KIR62011.1 278 GLFVNELPVTADDPAAGSFAEHARAVRARLREVYRFRHVPLAHAVSGLRPAPA-----LTAVSVGYR------RRGDDPAFAGVAAAVEWTLFGGAA 363
                   *************9********************************9998776.....666777774......467777777777776644466899 PP

                   .SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC-----HHHHHH CS
  Condensation 390 kydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqklselkllsdaekek 455
                    ++l +++++   +  + ++ + ++ d   +er+  +l++ll +v+++p  ++++l +l+ +e+e 
    KIR62011.1 364 RNALHVQVVDGPTGVDVGLQHSPAAIDTDAVERIGGHLRTLLAAVVADPWRPVADLPVLPADERER 429
                   99********99999999999**********************************99999999875 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.1   9.6e+03      39      54 ..     901     916 ..     900     916 .. 0.87
   2 !   66.8   0.1   3.6e-22   1.6e-18       1      65 [.     966    1028 ..     966    1030 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.1
  PP-binding  39 aaleeefgveiplsdl 54 
                 a+l++++ +++p ++l
  KIR62011.1 901 AELRRHLALSLPAAVL 916
                 89*********99876 PP

  == domain 2  score: 66.8 bits;  conditional E-value: 3.6e-22
  PP-binding    1 eklrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65  
                  ++lre++++vl++p  +i++++dlfdlG++Sl+++++ +++++++gve+pl+ +f+ pt+ae+a+
  KIR62011.1  966 QALREIWQDVLRIP--DIGLHEDLFDLGGHSLTITRISGRIQQRLGVEVPLDAFFDTPTIAEIAE 1028
                  589**********9..688********************************************98 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.092   4.1e+02      11      30 ..      47      66 ..      42     112 .. 0.79
   2 ?   -2.6   0.0       2.7   1.2e+04      38      69 ..     716     752 ..     697     755 .. 0.57
   3 !   35.3   0.0   3.9e-12   1.7e-08       2      76 .]     859     933 ..     858     933 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.092
                   TEEEEEEE-----TTS---E CS
  AMP-binding_C 11 aVaeaaVvGvpdevkGealv 30
                    V+ +a+v+++++v G ++v
     KIR62011.1 47 LVEACAAVADRHPVLGARVV 66
                   589999*******8886665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.7
                    ----...HHHHHHHHHHHHT-TT.TS-SEEE.E-S-- CS
  AMP-binding_C  38 gsea...leeeLkahvrkelgpy.avpkkvv.fvdel 69 
                    g+++   l++eL+a+ ++ +  y  +  +v+  v+++
     KIR62011.1 716 GEALpvaLARELRARTARLVNGYgPTEATVYaTVEDV 752
                    2222456888888888776665533555555444555 PP

  == domain 3  score: 35.3 bits;  conditional E-value: 3.9e-12
                    HHHHHHSSTTEEEEEEE-----TTS.---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpdevkG.ealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    v + l++hp+Vaea +    d+ +G  +lva+ v+++gs+  ++eL++h++  l++   p + v++d lp+  +GK
     KIR62011.1 859 VTARLLEHPGVAEATATLHADP-DGeARLVAYAVPRAGSAVDAAELRRHLALSLPAAVLPTDWVLLDGLPLGPNGK 933
                    66789**********9988888.55266*******99965578********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1037 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 7300.35
//
Query:       KIR62012.1  [L=81]
Description: hypothetical protein TK50_31880 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-07   30.2   0.7    7.9e-07   29.3   0.7    1.5  1  PP-binding  Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.7   4.4e-11   7.9e-07       2      65 ..      10      76 ..       9      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 4.4e-11
  PP-binding  2 klrelvaevlgvpleeid..pdtdlfdlGlDSllavellaaleeefgveiplsdlfe.hptlaelaa 65
                ++ +lv+e++g +++++d     +l  lG+DSl +++l+ ale e+gve++l+   + ++t+ +l+a
  KIR62012.1 10 RIAALVSEATGGEVSAVDvlGGGSLMALGVDSLGLLRLVDALELEYGVEVELTAPGQrLDTVDDLVA 76
                6788888888866555542135669***************************988666999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 619.52
//
Query:       KIR62013.1  [L=133]
Description: hypothetical protein TK50_31885 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.049   14.0  12.1      0.067   13.5  12.1    1.1  1  DUF4233   Protein of unknown function (DUF4233)
      0.068   12.2   7.3      0.081   11.9   7.3    1.0  1  PTS_EIIC  Phosphotransferase system, EIIC


Domain annotation for each model (and alignments):
>> DUF4233  Protein of unknown function (DUF4233)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5  12.1   7.5e-06     0.067       5      89 ..      26     113 ..      24     124 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.5e-06
     DUF4233   5 agtLvlEaivvlLallvaiglrdtepatvlsvgg...vlavallllagllrrpwglalglvlQvlliaagfvvp.amfvvgvvFaavWv 89 
                  ++Lv+ ++++l+al + + l   + ++ ++v +   ++a al++ a   rrpw+     +l  l+ aa + +  a+ +vg+  +a Wv
  KIR62013.1  26 VTVLVFAVLTLLFALATVHRLLVEDGSLGAAVFFatmAAACALVAGALAARRPWAAYPAYALSGLFAAASLGLFgAITIVGLGLLA-WV 113
                 589*************97777666666644444442377777777777889************99998887777677777665433.33 PP

>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   7.3     9e-06     0.081      53     132 ..      28     107 ..      24     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9e-06
    PTS_EIIC  53 navfanLpllfaigiayglakggkgvaglagligllafnllaaisvlllaagala........sakasilgiktlstgvfgaiivgll 132
                  +vfa+L llfa ++ ++l   ++g +  +++++++++ +  a+ +++ a    a        +a+a   ++ + s g+fgai ++ l
  KIR62013.1  28 VLVFAVLTLLFALATVHRL-LVEDGSL--GAAVFFATMAA--ACALVAGAL---AarrpwaayPAYALSGLFAAASLGLFGAITIVGL 107
                 579****************.5999999..99******999..554443333...3356899998899999999999999999977544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 918.74
//
Query:       KIR62014.1  [L=206]
Description: translation factor Sua5 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.8e-43  145.7   0.0    1.1e-42  145.5   0.0    1.0  1  Sua5_yciO_yrdC  Telomere recombination
  ------ inclusion threshold ------
       0.21   11.2   0.0        0.3   10.7   0.0    1.2  1  ThiP_synth      Thiamine-phosphate synthase


Domain annotation for each model (and alignments):
>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.5   0.0   1.2e-46   1.1e-42       2     179 .]      23     198 ..      22     198 .. 0.96

  Alignments for each domain:
  == domain 1  score: 145.5 bits;  conditional E-value: 1.2e-46
                     HHHTTSEEEEE-SSSEEEEEETTSHHHHHHHHHHHTSHCCC--EEEESSCCCCCCCC-TC--HHHHHHHHCT-SSSCEEEEE..E-TS-H.HHHT CS
  Sua5_yciO_yrdC   2 alrkGgivaiptetvYgLacdatneeaverlreiKgrpsdkplavlvasledlkklaeseveeealkllerfwPGpitlllkrskeklpk.evap 95 
                     ++r++g++a+pt++ ++L+c++ n++ ++r+rei++ +s + ++++++++++l ++++  + +++++++++ +PG +t++l+++ke +p+  ++p
      KIR62014.1  23 LIRRDGLIAYPTDSCFALGCRLGNKDGMDRIREIRHLDSGHHFTLVCRDFAQLGQFVH--LGNAVFRAVKAATPGSYTFILPATKE-VPRrLLHP 114
                     79*******************************************************8..**********************9888.777367** PP

                     TTTEEEEEE-SSHHHHHHHHHCTS-EEEEES-STTS.-S-SSHHHHHHHC-TTSECB-SS---SSS---EEEETTSSTSSECEXX CS
  Sua5_yciO_yrdC  96 glktvGvrlPdtplarlLlealgeplvaTSanlsge.psitdaeeveeelgeivdlildggeiavgvdstVvdltegkpkilRrG 179
                     ++ktvGvr+P++ +a++Ll++lgepl +++  l+g+ +++t+  e++e+l++ +d+++d g++ + +++tVvd+++g p+i+R G
      KIR62014.1 115 KKKTVGVRIPAHTVAQALLTELGEPLLSSTLLLPGDdEPMTQGWEIKERLDHAIDAVVDSGDCGT-EPTTVVDFSDGDPEIVRVG 198
                     **********************************987999*********************9987.*****************87 PP

>> ThiP_synth  Thiamine-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.4e-05       0.3     119     151 ..     155     185 ..     128     193 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHHHCCS-ECEEEE--BCTB--EEEE CS
  ThiP_synth 119 tmewgvaeaieelevpdviydeGgvGkEpmiyv 151
                 t  w+++e ++ +   d+++d G+ G Ep+++v
  KIR62014.1 155 TQGWEIKERLDHA--IDAVVDSGDCGTEPTTVV 185
                 4678888888765..6**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1382.82
//
Query:       KIR62015.1  [L=516]
Description: hypothetical protein TK50_31895 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-13   49.7   0.9    0.00096   19.9   0.1    5.3  5  WD40         WD domain, G-beta repeat
     0.0011   19.3   0.0        6.8    7.1   0.0    3.8  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0049   15.6   0.0       0.89    8.1   0.0    2.3  2  Nup160       Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.4   2.4e+03      20      38 .]     256     274 ..     243     274 .. 0.78
   2 !   15.0   0.0   5.7e-06     0.034       2      38 .]     279     318 ..     278     318 .. 0.80
   3 !    7.2   0.0    0.0016       9.8      23      38 .]     350     365 ..     333     365 .. 0.77
   4 !   19.9   0.1   1.6e-07   0.00096       5      38 .]     373     409 ..     369     409 .. 0.86
   5 ?   -0.4   0.0      0.41   2.5e+03      13      33 ..     480     502 ..     473     503 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.4
                 TTSSEEEEEETTSEEEEEE CS
        WD40  20 pdgawlasGsdDgtvriWd 38 
                 p  ++las+++   v++Wd
  KIR62015.1 256 PQRTLLASAGYGEAVHLWD 274
                 5667789888899999998 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 5.7e-06
                 EEEEEEESS.SSEEEEE.EETTSSE.EEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtsla.fspdgaw.lasGsdDgtvriWd 38 
                 + +r l GH  +v++l+ ++ dg+  lasG+  + vriWd
  KIR62015.1 279 KAVRALAGHlAPVNALCaVPVDGTAlLASGGGERGVRIWD 318
                 6678899**********955555552679977*******9 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0016
                 SEEEEEETTSEEEEEE CS
        WD40  23 awlasGsdDgtvriWd 38 
                 a+la++  Dg +r+Wd
  KIR62015.1 350 ALLAAAYTDGGIRVWD 365
                 55888878*******9 PP

  == domain 4  score: 19.9 bits;  conditional E-value: 1.6e-07
                 EEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 
                   + +H ssv++l+  + +   wlas+  Dgtvr+Wd
  KIR62015.1 373 LQIAAHsSSVNALCagTVDGAGWLASAANDGTVRLWD 409
                 55669*888******99999999**9999*******9 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.41
                 EEEEE..EETTSSEEE.EEETTSE CS
        WD40  13 vtsla..fspdgawla.sGsdDgt 33 
                 ++s++   s d a+l+ +G  D+ 
  KIR62015.1 480 IRSMCqvGSGDDAFLMfAGY-DRA 502
                 65555559999999864787.986 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.4   2.4e+03      50      76 ..     258     284 ..     247     296 .. 0.76
   2 ?   -2.5   0.0       1.1   6.3e+03      52      75 ..     304     327 ..     298     340 .. 0.81
   3 !    7.1   0.0    0.0011       6.8      51      86 ..     350     384 ..     335     390 .. 0.88
   4 !    6.9   0.0    0.0013       7.5      52      81 ..     395     424 ..     389     433 .. 0.87
   5 ?   -2.1   0.0      0.82   4.9e+03      49      66 ..     434     452 ..     431     460 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.4
  ANAPC4_WD40  50 gklLavaysdgevrlldaesgkvvhsl 76 
                   +lLa a    +v+l d  +gk v++l
   KIR62015.1 258 RTLLASAGYGEAVHLWDPATGKAVRAL 284
                  567777777778888888888888766 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhs 75 
                  lLa +  +  vr+ d e g+ v+ 
   KIR62015.1 304 LLASGGGERGVRIWDPEAGRQVRM 327
                  788999999999999999988765 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0011
  ANAPC4_WD40  51 klLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                   lLa ay dg +r+ d  +g+ + ++ ++s++ v+ 
   KIR62015.1 350 ALLAAAYTDGGIRVWDPADGRPILQIAAHSSS-VNA 384
                  489***********************999985.654 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0013
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhslsvkse 81 
                   La a +dg+vrl d  +gk + s++ +s 
   KIR62015.1 395 WLASAANDGTVRLWDLVTGKALGSFDDSSP 424
                  599******************999876665 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 0.82
  ANAPC4_WD40  49 dgklLavaysdg.evrlld 66 
                  dg++L+ a  dg  ++l+d
   KIR62015.1 434 DGEVLVAAAGDGvGISLFD 452
                  899*****99996677766 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0012       7.1     220     256 ..     337     375 ..     321     381 .. 0.80
   2 !    8.1   0.0   0.00015      0.89     221     257 ..     385     420 ..     374     429 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0012
                 EEET.......TTTEEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 220 dvavavvei..gqtylfalsrdgkLrvWnlltgkclati 256
                 ++   v++   g+++l+a++ dg +rvW+ ++g+++ +i
  KIR62015.1 337 QALCTVARDdgGRALLAAAYTDGGIRVWDPADGRPILQI 375
                 5555566667899****************9999888775 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00015
                 EET.....TTTEEEEEETT-EEEEEETTTTEEEEEEE CS
      Nup160 221 vavavveigqtylfalsrdgkLrvWnlltgkclatid 257
                 +  + v+ g   l+++  dg++r+W+l tgk l ++d
  KIR62015.1 385 LCAGTVD-GAGWLASAANDGTVRLWDLVTGKALGSFD 420
                 4455555.88889999***************998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3681.57
//
Query:       KIR62016.1  [L=262]
Description: hypothetical protein TK50_31900 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-11   44.2   2.5    1.2e-06   28.5   0.1    2.3  2  Neocarzinostat  Neocarzinostatin family


Domain annotation for each model (and alignments):
>> Neocarzinostat  Neocarzinostatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.1   6.5e-11   1.2e-06       1      77 [.      27     105 ..      27     138 .. 0.70
   2 !   15.9   0.2   5.3e-07    0.0095       1      65 [.     145     212 ..     145     222 .. 0.65

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 6.5e-11
  Neocarzinostat   1 lsaspstgLsdgdvvtvsgtGftagstlalgeCvavapggvaCnkaagavv.t..adasGkisasltvaksFegvlsdGs 77 
                     ++a p+tgLs   vv v++tG+ + s + + +C+++a + ++ ++ + +vv t  ++  G+is +++  +    + + G 
      KIR62016.1  27 VTARPATGLSASSVVRVTATGLPKRSDVSIVQCDKAAYD-FEGSRIGCSVVhTttTSRLGRISEQVSASTRVYRSRPYGD 105
                     6899*******************************9654.4444444333312226667888888887766555555555 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 5.3e-07
  Neocarzinostat   1 lsaspstgLsdgdvvtvsgtGftagst...lalgeCvavapggvaCnkaagavvt.adasGkisasltv 65 
                     ++a+ps+gL dg+ v+v+gt     s    +    C     + + C  ++  +++    + + +as++v
      KIR62016.1 145 ITATPSSGLVDGQLVEVTGTAKGSPSRhvtIIQTACYDI-IQDSGCYDDTPLATVpLTEDDTFTASVNV 212
                     68****************996544333201344445544.55566666665555545556666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1945.62
//
Query:       KIR62017.1  [L=435]
Description: dihydrofolate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-15   57.6   0.0    2.8e-15   56.8   0.0    1.4  1  Mur_ligase_M  Mur ligase middle domain
      8e-11   42.1   0.0    2.1e-10   40.7   0.0    1.7  1  Mur_ligase_C  Mur ligase family, glutamate ligase domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   3.1e-19   2.8e-15       2     192 .]      40     266 ..      39     266 .. 0.78

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 3.1e-19
                   ESSS-HHHHHHHHHHHHHCT...EEEEETTC..........................................SS-THHHHHHHHHHHHHTT-SEEE CS
  Mur_ligase_M   2 TGtnGKTTtteliaaileka...gkvigtvg..........................................ttnneiglpktlaemekkeaeyav 53 
                   TGtnGKT+t+++i ++l++    ++ +++                                            t   ++++ +++a+++++ +++av
    KIR62017.1  40 TGTNGKTSTARMIDSLLRAFglhTGRYTSPHlesvrerisldgepvgedrfvatyreiaplaelvdqrsaeplT-YFDMTTALAFATFADAPVDVAV 135
                   ******************9966655555555999**************************************55.5667788889999999****** PP

                   EE--HCHHHCTTTCCHCBESEEEE---TSTTHHHH.SSHHHHHHHHHHHHHTSETTCEEEEETTSC....CHHHHHCTCCTCEEEEESSSTSECEEE CS
  Mur_ligase_M  54 lEvsshglgekrlegllkpdvavitnispdHldfh.gtlenyaeaKaelferlkeegiavinaddp.yakelikklkkakvkvvtfglekeaedlra 148
                   +Ev+  g +     ++++  vav+t i+ dH + + +tl+++a  Ka ++ +   ++++v+ a+++ +a+ + ++ ++ +++v + g e       +
    KIR62017.1 136 VEVGLGGAE--DATNVIQAGVAVLTPIGLDHTEWLgDTLQDIALHKAGIIHK---GATVVCAAQEEeAARPILERCAEVGATVAREGSEFGV---LR 224
                   ******554..44555779**************8879************984...4477777666603444444444444444444444433...23 PP

                   EEEEEETTEEEEEEEEETTEEEEEEESSCSCHHHHHHHHHHHHH CS
  Mur_ligase_M 149 knieeksegteiellevkggeleieipllGkhnvyNalaaiaaa 192
                   +++ +   g+ +++  + g   e+ +pl G h+++Na++a+aa+
    KIR62017.1 225 RSVAV--GGQVLNIQGLGGVYEEVFVPLHGAHQAQNAAVALAAV 266
                   34444..6777767766555555******************985 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   2.3e-14   2.1e-10       2      86 ..     293     370 ..     292     375 .. 0.90

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 2.3e-14
                   TTSSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEEESS-TTST CS
  Mur_ligase_C   2 kgRlevvgeadgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvvlgdypraed 86 
                   +gRle v++  ++t++ D ahnp+++ a+++al+e ++ ++l+ v+  +g+   ++++   +++ l+  l+  +v+ + +pra  
    KIR62017.1 293 PGRLEKVRT--APTILLDGAHNPHGMAATVTALQEEFAFSKLVGVLAVLGD---KDAA--GLLELLEPVLDHLVVTRNSSPRAMP 370
                   8********..99**********************************9777...9999..9999999998888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3183.24
//
Query:       KIR62018.1  [L=285]
Description: RNA polymerase sigma factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-13   48.0   2.0    1.7e-12   46.9   2.0    1.6  1  Sigma70_r2    Sigma-70 region 2
    8.3e-09   35.0   0.3    8.3e-09   35.0   0.3    1.6  2  Sigma70_r4_2  Sigma-70, region 4
    1.6e-05   25.5   1.3    1.6e-05   25.5   1.3    2.0  2  SnoaL_2       SnoaL-like domain
    4.5e-05   22.9   1.4    4.9e-05   22.8   0.1    1.8  2  Sigma70_r4    Sigma-70, region 4
     0.0075   16.5   0.0      0.014   15.6   0.0    1.5  1  SnoaL_3       SnoaL-like domain
     0.0096   16.3   0.2      0.023   15.1   0.0    1.7  2  DUF4440       Domain of unknown function (DUF4440)
  ------ inclusion threshold ------
      0.043   14.1   1.9      0.043   14.1   1.9    2.1  3  TPR_12        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   2.0   6.6e-16   1.7e-12       8      69 ..       1      58 [.       1      60 [. 0.90

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 6.6e-16
                HHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSS CS
  Sigma70_r2  8 lvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrr 69
                ++++la+rllgs +daeD++Q+a+lr++ +++  +++ + +++ +l r+++++aidrlR r+
  KIR62018.1  1 MLLGLAYRLLGSLHDAEDVLQDAYLRWL-GAD--RAAVA-EPRRYLSRVVTRLAIDRLRARQ 58
                5899**********************88.777..64555.*******************997 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       3.2   8.3e+03       5      16 ..      48      59 ..      44      61 .. 0.71
   2 !   35.0   0.3   3.3e-12   8.3e-09       2      50 ..     102     150 ..     101     153 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.2
                  HHHHTTS-HHHH CS
  Sigma70_r4_2  5 realaeLperqr 16
                  r a+++L  rq 
    KIR62018.1 48 RLAIDRLRARQA 59
                  567788877775 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 3.3e-12
                   HHHHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHH CS
  Sigma70_r4_2   2 qalrealaeLperqreifllryleglsykEIAellgisegtVksrlsRA 50 
                   +al+++l++L+  +r++++lr  + l+ +EIAe+lg s + +++  +RA
    KIR62018.1 102 LALLHLLERLTAPERAVYVLRTAFALPFAEIAEILGRSAADCRQLHHRA 150
                   689*********************************************9 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.5   8.9e+03      44      65 ..     137     158 ..     129     167 .. 0.52
   2 !   25.5   1.3   6.1e-09   1.6e-05       2      53 ..     173     230 ..     172     269 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.5
                 HHHHHHEEEEEEEEEEEEEETT CS
     SnoaL_2  44 ralfaafpdlrfeihdvvadgd 65 
                  +  a + +l+++ +d va ++
  KIR62018.1 137 GRSAADCRQLHHRATDRVAADR 158
                 5555555555555444444433 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 6.1e-09
                 HHHHHHHHTTCHHHHHHTEEEEEEEEET.TSE.......EESHHHHHHHHHHHHHHEEEE CS
     SnoaL_2   2 raflaalnagdldalaalfapdvvwedp.gge.......lrGreairaffralfaafpdl 53 
                 +aflaa  +gdl++l al+a+dv+ +   gg+       +rG +++++ff++++   p++
  KIR62018.1 173 DAFLAAARDGDLARLTALVADDVTAWSDgGGRvrsarnpVRGADRVARFFAGVHG--PRR 230
                 69**********************66554777999999**************995..333 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2         2   5.1e+03      44      49 ..      50      55 ..      44      62 .. 0.60
   2 !   22.8   0.1   1.9e-08   4.9e-05       1      48 [.     107     154 ..     107     156 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2
                HHHHHH CS
  Sigma70_r4 44 AlrkLR 49
                A+++LR
  KIR62018.1 50 AIDRLR 55
                444444 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.9e-08
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 +L++L++ er v +lr    l+++EI+e+lg S    rq+++rA +++
  KIR62018.1 107 LLERLTAPERAVYVLRTAFALPFAEIAEILGRSAADCRQLHHRATDRV 154
                 599**************9999***********************8875 PP

>> SnoaL_3  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.6e-06     0.014       3      38 ..     170     205 ..     169     226 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.6e-06
     SnoaL_3   3 alldafyeaaaegdfdalfalwaddivfigtgadel 38 
                  lldaf++aa++gd+++l al+add++    g + +
  KIR62018.1 170 RLLDAFLAAARDGDLARLTALVADDVTAWSDGGGRV 205
                 689***********************9876444433 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.3   1.1e+04      51      67 ..      38      54 ..      20      65 .. 0.59
   2 !   15.1   0.0   9.1e-06     0.023       3      39 ..     170     207 ..     169     245 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.3
                HCEEEEEEEEEEEEEEE CS
     DUF4440 51 faagrslelteeevrvl 67
                + ++ s ++t++++++l
  KIR62018.1 38 PRRYLSRVVTRLAIDRL 54
                34444445555555544 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 9.1e-06
                 HHHHHHHHHHHCT-HHHHHHCEEEEEEEE-TT.S-EEE CS
     DUF4440   3 aleealeeafvagdaealaallapdavlvgps.gtvld 39 
                 +l  a+ +a + gd+++l al+a+d++ + ++ g+v++
  KIR62018.1 170 RLLDAFLAAARDGDLARLTALVADDVTAWSDGgGRVRS 207
                 5778999**********************999555566 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.9   1.7e-05     0.043       8      56 ..       2      47 ..       1      64 [. 0.86
   2 ?   -2.6   0.1       2.7   6.9e+03      54      71 ..     107     124 ..      91     128 .. 0.52
   3 ?   -2.7   0.1         3   7.8e+03      13      29 ..     133     150 ..     129     156 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-05
      TPR_12  8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyr 56
                 l++++r lg +++A++ l+ a+ ++   lG d++++a+ +r L+r+  
  KIR62018.1  2 LLGLAYRLLGSLHDAEDVLQDAYLRW---LGADRAAVAEPRRYLSRVVT 47
                49********************9999...9*********9999999864 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.7
      TPR_12  54 lyralgryeeAlelleea 71 
                 l+++l  +e A++ l+ a
  KIR62018.1 107 LLERLTAPERAVYVLRTA 124
                 233455566666666665 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3
      TPR_12  13 lrrlgr.ydeAlelleka 29 
                    lgr  +++++l+++a
  KIR62018.1 133 AEILGRsAADCRQLHHRA 150
                 444455555666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1928.74
//
Query:       KIR62019.1  [L=206]
Description: hypothetical protein TK50_21750 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-31  108.3   0.0    4.5e-31  108.0   0.0    1.1  1  DUF2344   Uncharacterized protein conserved in bacteria (DUF2
  ------ inclusion threshold ------
       0.16   11.9   0.1        5.3    7.0   0.1    2.9  3  DUF3652   Huntingtin protein region


Domain annotation for each model (and alignments):
>> DUF2344  Uncharacterized protein conserved in bacteria (DUF2344)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0     5e-35   4.5e-31      35     175 .]       1     157 [.       1     157 [. 0.95

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 5e-35
     DUF2344  35 vayseGFnPhpkisfaaaLpvGveSegEyldielteevdpeevverLnaqlpegikileveeieekakslmallaaaeYrve.......eleealeefl 126
                 +a+s+GF Phpkis+a+a p+Gv+Se+Eyl+i l+e+vdp +++++L+a+l +g+++l+++ +     sl+++++a+++r+e        le+a+++f 
  KIR62019.1   1 MAFSQGFTPHPKISYASAAPTGVASEAEYLEIGLREPVDPGQLRAALDAALSPGLDVLDAVVAAGG--SLADRIEASHWRIElpevepaVLERAVAAFT 97 
                 79***********************************************************99977..*************888999*989******** PP

     DUF2344 127 aaeeilvekktkkgkkevdirplikelelee...........elalllllaagseenlrP 175
                 aa e++ve+ tk+g++++d r+++ ++++++           ++a+l l+ ++ + ++rP
  KIR62019.1  98 AAAEVQVERMTKQGRRTFDARAAVMKIDVIRsvetpsgapgvSCAILELVVRQVTPSVRP 157
                 ***************************977678889999999889999999999999998 PP

>> DUF3652  Huntingtin protein region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.067     6e+02      13      34 ..      70      88 ..      67      90 .. 0.72
   2 ?    7.0   0.1    0.0006       5.3      18      31 ..     134     149 ..     133     157 .. 0.81
   3 ?   -0.4   0.0      0.13   1.1e+03       6      14 ..     176     184 ..     174     188 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.067
     DUF3652 13 dglmASgqpalrheipalrpiv 34
                d + AS     r e+p+++p v
  KIR62019.1 70 DRIEASHW---RIELPEVEPAV 88
                55566655...889****9966 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0006
     DUF3652  18 Sgqpalrheipal..r 31 
                 Sg p+++++i++l  r
  KIR62019.1 134 SGAPGVSCAILELvvR 149
                 899*********9652 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.13
     DUF3652   6 PrIiqLcdg 14 
                 Pr+i+L  g
  KIR62019.1 176 PRVIRLAQG 184
                 9***99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1463.98
//
Query:       KIR62020.1  [L=799]
Description: competence protein ComEC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-52  178.7  23.7    1.4e-52  178.7  23.7    2.1  2  Competence     Competence protein
    8.9e-09   35.6   2.0    8.9e-09   35.6   2.0    2.4  2  Lactamase_B    Metallo-beta-lactamase superfamily
    2.3e-07   30.6   4.0    2.3e-07   30.6   4.0    5.2  5  DUF4131        Domain of unknown function (DUF4131)
     0.0012   18.4   0.0     0.0025   17.4   0.0    1.6  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Competence  Competence protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   2.3      0.55   2.5e+03     134     141 ..      55      62 ..      21      97 .. 0.42
   2 !  178.7  23.7   3.1e-56   1.4e-52       1     267 [.     243     506 ..     243     510 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.55
  Competence 134 illlaprl 141
                  +l+a +l
  KIR62020.1  55 AVLVAAHL 62 
                 22222222 PP

  == domain 2  score: 178.7 bits;  conditional E-value: 3.1e-56
  Competence   1 LllGdrselseevweafqktGlaHllAiSGlHvglvagllllllrrlllrlplrklaallallflllYallaGfspsvlRAllmlllvllalllkrkas 99 
                 L++Gd+s+l ++v+e+f++tG++Hl A+SG +v++v+g++lll+r++   + ++++aa l +l+l+++++l   spsv+RA++m ++ l+al ++r+  
  KIR62020.1 243 LVVGDTSRLLPAVEEDFRTTGMTHLNAVSGSNVAIVVGAVLLLARWA---RAGPRVAAGLCVLALVGFVILVRPSPSVVRAATMGAIGLAALAAGRPRA 338
                 89*********************************************...999********************************************** PP

  Competence 100 pldalalaallvllvdPlallsaGfqLSflavagilllaprlekalkrlskkvrellllavslaaqlallplllylfgqislvsllaNllavPlvsllv 198
                 +l ala+a+++++l+dP+ + ++Gf LS+la+ag+lllap +++ l+r+  ++  + +lav  aaqla+ p+++ + g +slv+++aNllavP ++  +
  KIR62020.1 339 ALPALAAAVAALVLFDPELAGDPGFALSVLATAGLLLLAPGWRDGLRRRGVPPGFAEALAVPAAAQLACGPVVAGISGTVSLVAVPANLLAVPAIAPAT 437
                 *************************************************************************************************** PP

  Competence 199 lplallallllllpslaalllqladlllelllellellaslplaslvlgkpslllllllylllllllll 267
                 + ++ +a+l  ++++ a+l ++la +++++l++++++ a+lp   l+++   + +lll+ l ++ll++ 
  KIR62020.1 438 VLGVAAAVLSPVWSPGAELAAWLASWPAWWLVTVARYGARLPAGMLPWPDGVPGALLLAGLTVALLVAT 506
                 99999999999999*****************************88888666666666666655555544 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       0.4   1.8e+03     129     180 ..     147     217 ..      88     226 .. 0.63
   2 !   35.6   2.0     2e-12   8.9e-09      15     174 ..     561     724 ..     549     745 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.4
                  TSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC....................TTCEEE-SHCHHHHHHH CS
  Lactamase_B 129 pghghghgvveygggkvlftGDallagetgridl...................tlrgaevrdpsdaekyld 180
                   ++g+++++v +  + +l++ D   ++  +  +l                   t rg++++++ + +++++
   KIR62020.1 147 ALTGPDGVRVAASLRVLLLATDPAWRALLPGQRLtaegrlgaprggdltaavlTVRGPPTPHGPPPWSQRA 217
                  45666666666666666666665554333333334445555555555555555555555666666666655 PP

  == domain 2  score: 35.6 bits;  conditional E-value: 2e-12
                  TCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHH..TTCHCGCCEEEEE CS
  Lactamase_B  15 ggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkgll..lagvsadkpdvde 110
                  g+++++D+G +++a +  l    ++l+ ++v  ++ +H+H+DH+Gg++g+ + + v+ +  + + +   ++ + +aa + g+   ++++   +  +  
   KIR62020.1 561 GRAVVVDAGPDPAAVDGCL----RRLGVREVPLLLFSHFHVDHTGGVAGVFRGRRVAAVRTPQWPEPAAGRDLVRAAAAAGGAvlAPAPAGWAYRAGG 654
                  899**************76....**************************************************9999999875655555555555555 PP

                  TTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.......TTCEEE-SHCH CS
  Lactamase_B 111 eeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridl......tlrgaevrdpsd 174
                   el + +++ ++ ++   p+  +++++ +  g ++l++GDa  ++ ++++d+        ++++v ++++
   KIR62020.1 655 VELVVLGPPYPLRGTRSDPNNNSLVLRATVAGVRILLAGDAETEEQRALLDRmppggvRADVLKVAHHGS 724
                  5555555555555666667778889999999**********99999999999766666555555555555 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   4.0   5.1e-11   2.3e-07       9     137 ..      49     191 ..      17     194 .. 0.85
   2 ?    1.6   5.8     0.044     2e+02       8      51 ..     275     314 ..     269     318 .. 0.75
   3 ?   -0.8   2.9      0.24   1.1e+03       5      46 ..     315     352 ..     311     354 .. 0.71
   4 ?   -2.2   1.9      0.64   2.9e+03       5      34 ..     363     389 ..     358     448 .. 0.64
   5 ?    1.3   2.1     0.054   2.4e+02       7      43 ..     491     524 ..     483     530 .. 0.45

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 5.1e-11
     DUF4131   9 llalllllllllllllrr....rprrrvllllllllllallgfalrapqpnandlsqlles...gqeviveGvvaslpeltgsgt....rfvleverv. 95 
                 + a++l++l+++ ll r      p rr  +++ ++ll ++ g++++a++ +++d + +  +   + +v+   vv   p+  +  +     + +++e+v 
  KIR62020.1  49 AGAAGLAVLVAAHLLGRLgrpaDPVRRHGWIAVAVLLGVVCGATATAARLGVRDAPAVRALvddRATVTADLVVRADPRPLRGVAgrpaTLLVRAESVa 147
                 33444444444444444488999999999***********************99999998898788888888999999999665566679********* PP

     DUF4131  96 ..lsagktkpvsgrvlvtvpkspaeglrpGdrlrltgrlkrprp 137
                   + +g+++ +s rvl+   ++ + +l pG+rl+ +grl  pr+
  KIR62020.1 148 ltGPDGVRVAASLRVLLLATDPAWRALLPGQRLTAEGRLGAPRG 191
                 ******************************************97 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.044
     DUF4131   8 vllalllllllllllllrrrprrrvllllllllllallgfalra 51 
                 v+++++++lll++++    r  +rv+++l++l+l++++ ++ ++
  KIR62020.1 275 VAIVVGAVLLLARWA----RAGPRVAAGLCVLALVGFVILVRPS 314
                 455566666666666....899***********99999877655 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.24
     DUF4131   5 lalvllalllllllllllllrrrprrrvllllllllllallg 46 
                 +++v  a+++++ l++l+    + r+r +l +l+++++al+ 
  KIR62020.1 315 PSVVRAATMGAIGLAALA----AGRPRAALPALAAAVAALVL 352
                 566777778888888888....56788888877777777765 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.64
     DUF4131   5 lalvllalllllllllllllrrrprrrvll 34 
                 +al +la+++llll+ +++      rr+ +
  KIR62020.1 363 FALSVLATAGLLLLAPGWRD---GLRRRGV 389
                 56677777777777777763...3333322 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.054
     DUF4131   7 lvllalllllllllllllrrrprrrvlllllllllla 43 
                   ll+++l ++ll + +   rp  r+l+++ +++++a
  KIR62020.1 491 GALLLAGLTVALLVATR---RPVVRRLVAVVAVAVVA 524
                 23333333333333333...45555555555554444 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.5e-07    0.0025       2      54 ..     563     610 ..     562     708 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.5e-07
                    EEEES--TT..HHHH..HTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC- CS
  Lactamase_B_2   2 riLiDagpd..lrqq..alralqPvelrdelppidaVllthaHyDHlaglltlrelr 54 
                     +++Dagpd         lr+l        ++++ ++l++h H+DH+ g+  + ++r
     KIR62020.1 563 AVVVDAGPDpaA--VdgCLRRL-------GVREVPLLLFSHFHVDHTGGVAGVFRGR 610
                    689******542..32356665.......799***************9998877743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 5333.90
//
Query:       KIR62021.1  [L=322]
Description: aminoglycoside phosphotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-12   48.2  14.4    1.3e-12   48.2  14.4    1.4  1  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2  14.4     7e-17   1.3e-12      20     225 ..      53     257 ..      45     271 .. 0.73

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 7e-17
                 T.--EEEEEE-TT...S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-S..T CS
         APH  20 a.gryvlrrnppa...raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpa..a 112
                 + +r++++ ++     ++    +re+a+l+ L +  +pvP++ ++   ++ + l   +i +  ++ ++     a+l++ l+  +e+ aal + +p+  a
  KIR62021.1  53 DgRRVFVKAASLTeqrHLVDWYAREAAVLDRLPAG-LPVPRPRWTVSAAGWYALGLDAIDGRTPTLPWA---RADLDATLAGYAEVAAALADPPPElvA 147
                 43677777777773344444455777777776555.79******5555555555666666666666666...99****************999888775 PP

                 TTB-SHHCHTCC.HHHHHHCHHHCCCGCCTCC.HHHHHHHHHHHHHHHH--S.SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCC CS
         APH 113 lpladflaqdle.llrqlesatarllaselld.lleeleeqvlaalaallpg.elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavl 208
                 l+l++ ++  +e  l++ e a+ r +a++l++  + +l +  l al+ +lpg + + +l HgDl+++N+lvdp++     + D+  +++gp+ +Dl++l
  KIR62021.1 148 LGLPRLADLAREdILWWCEVAAGREPAPDLPPgARRRLPD--LVALESRLPGyAARGGLAHGDLRLDNVLVDPAGRAW--FCDWNWLCHGPAWFDLVSL 242
                 5555555544442345555554599999999975555655..6778888888999*****************998998..******************* PP

                 HHHCSCHCCCHCHHHHH CS
         APH 209 lrswtseldpeflaall 225
                 l   t +++   ++al+
  KIR62021.1 243 L-I-TAHASGLDADALF 257
                 *.3.4555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2273.06
//
Query:       KIR62022.1  [L=277]
Description: sugar ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-23   81.6  17.5    5.7e-23   81.6  17.5    1.7  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.22   3.9e+03      60      72 ..      14      26 ..       8      44 .. 0.60
   2 !   81.6  17.5   3.2e-27   5.7e-23       5     178 ..      89     265 ..      85     271 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.22
  BPD_transp_1 60 lllsaapyvrlir 72
                  ++l+aa++v++++
    KIR62022.1 14 VALFAAFPVYWMI 26
                  3333333333333 PP

  == domain 2  score: 81.6 bits;  conditional E-value: 3.2e-27
  BPD_transp_1   5 Gilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilg.hlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   ++laa    ++++kl+  ++++  v++++P  +l+i+l+l+   ++ lg +  lp +++++l +++p+++++ r+++ ++pk+l+eaa ++Gasr q
    KIR62022.1  89 ALLAAtavARFRFKLRTSFLIMLLVVQMIPLEALVIPLFLM---IQRLGlYNTLPsLVLTYLGFSLPFAVWMLRGFVAAVPKELEEAAAIDGASRAQ 182
                   5666666779***********************99999975...4555545555669**************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtll..leailgydyseisnggvlalviavlllnlvadilqrl 178
                   +fr+v++P+++p ++++ i++f+ ++++ ++++++ +++   tl   +++  g+d +++   +++a ++++l++++++ ++qr 
    KIR62022.1 183 TFRRVLFPLVAPGLVATSIFSFITAWNELIFALTFVNDQDRYTLPvaMTFFFGRDDTAWG-PVMAASTLFTLPVIVFFLLVQRR 265
                   **************************************9833333013444555555555.78888888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2159.72
//
Query:       KIR62023.1  [L=289]
Description: hypothetical protein TK50_21925 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.029   14.2   3.6        2.5    8.0   3.3    2.3  2  DUF2970   Protein of unknown function (DUF2970)


Domain annotation for each model (and alignments):
>> DUF2970  Protein of unknown function (DUF2970)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.3   0.00014       2.5      31      54 ..       6      29 ..       1      30 [. 0.89
   2 ?    4.1   0.0    0.0024        42       3      18 ..      59      74 ..      58      78 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00014
     DUF2970 31 lhviivGlilaalfvllLillVkl 54
                 +v+++G+++a++ v++++l+V++
  KIR62023.1  6 RAVVATGVVVAVIAVVGIWLVVRQ 29
                689*******************97 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0024
     DUF2970  3 qvlkaVlaaffGVrkg 18
                q+  a + a++GV+++
  KIR62023.1 59 QMANAATIAAIGVQRK 74
                789999********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2097.71
//
Query:       KIR62024.1  [L=414]
Description: coproporphyrinogen III oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-21   76.0   0.0    6.7e-21   75.4   0.0    1.3  1  Radical_SAM  Radical SAM superfamily
  ------ inclusion threshold ------
      0.013   15.5   0.2       0.16   12.0   0.2    2.5  2  HemN_C       HemN C-terminal domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   7.5e-25   6.7e-21       2     164 ..      41     216 ..      40     219 .. 0.90

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 7.5e-25
                  EEESEESS--TTTSCCTT.........HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC.....CCTEEEEEEEC CS
                  xxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpet.........vrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlakla.....vpgiritvetn 85 
                  v++++C+ rC +C++++          +r ++   +l+   ++  v  ++  ++v++v++ggg+p+l p   +l++ l  ++      ++ ++t e+n
   KIR62024.1  41 VHVPFCASRCGYCDFNTYtadelgggaSREGYADTVLTELALASRVLGGSPPPRVDTVFVGGGTPTLLP-ADDLARILDGIDrtwglAADAEVTTEAN 137
                  789*************99***999997777777777777777777877765555*************76.667777777777899************* PP

                  SSCHGHHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET.EEEEEEEBTTTSHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  86 gtlpdeeklerllelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikr.vvdrivglpGendeeleell 164
                  +  +++e l++l+ +g +r+slg ++a +  vl ++ r+h   +  ea + +r+ag++  + d i+g pGe+ +++ + l
   KIR62024.1 138 PESVTPESLKTLRAAGYTRISLGMQSAAPG-VLAILDRRHRAGRATEAAREARDAGFDHvNLDLIYGTPGESADDFAASL 216
                  ******************************.********************************************98876 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.09     8e+02      30      59 ..     212     241 ..     206     245 .. 0.84
   2 ?   12.0   0.2   1.8e-05      0.16       1      65 [.     343     402 ..     343     403 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.09
      HemN_C  30 fgldleellaaaleklqeqGLLeldggrlr 59 
                 f  +l++++aa ++   +  L++ dg+rl 
  KIR62024.1 212 FAASLAQVVAAGVDHVSAYALIVEDGTRLA 241
                 5567999999999999999*******9996 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.8e-05
      HemN_C   1 lspedrleEeiilgLRlreGldlaafeqrfgldleellaaaleklqeqGLLeldg...grlrltprGr 65 
                 l+p+++  E ++l+LRl  Gl+la + +  g       +a  +++ ++GLL  +g   gr +lt rGr
  KIR62024.1 343 LTPDEAHTEDVMLRLRLASGLPLAVLDD-AG-------RAGARRALADGLLDPAGyaaGRAVLTLRGR 402
                 7899999****************98766.23.......334466666666666555556666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3134.69
//
Query:       KIR62025.1  [L=472]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.3e-32  110.3   1.7    1.2e-31  109.7   1.7    1.2  1  DUF21         Cyclin M transmembrane N-terminal domain
    4.4e-15   55.9   0.9    5.6e-07   29.9   0.0    2.6  2  CBS           CBS domain
    1.5e-14   53.8   0.2    1.5e-13   50.5   0.2    2.3  2  CorC_HlyC     Transporter associated domain
  ------ inclusion threshold ------
      0.018   14.5   0.0      0.027   13.9   0.0    1.2  1  Beta_protein  Beta protein


Domain annotation for each model (and alignments):
>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7   1.7   2.7e-35   1.2e-31       4     176 .]      32     207 ..      29     207 .. 0.97

  Alignments for each domain:
  == domain 1  score: 109.7 bits;  conditional E-value: 2.7e-35
       DUF21   4 vlllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellaegalavviatvivtllilvfgE 102
                   l++l+++ ++ E+Al ++s++r  ela++g ++a++l+ +  +  r L+ ll++  l+++ +++l+++++v+++++g+ a++++  ++t++ +v+  
  KIR62025.1  32 AGLVVLAGLIAMTEAALAAVSPARAAELARDGARGARTLQAVAGDVVRHLNLLLLLRLLAELTATTLVALVAVDTFGAGWRAALVTAGAMTVISFVVVG 130
                 5689*************************************************************************9999999999999********* PP

       DUF21 103 ilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil...esesepavseeelkklveeseeegvieeee 176
                 + P++l++++a ++ +a+ap++r+l + l Pl+ ll ++ n+++   + +++p+ ++ el++lv+++e++gv+e+ e
  KIR62025.1 131 VGPRTLGRQHAYAVGRAVAPLVRWLGRALNPLASLLILIGNAVTpgrGFREGPFATQVELRELVDLAEQRGVVEHGE 207
                 ***********************************************99***********************99865 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.3e-10   5.6e-07       3      53 ..     224     277 ..     222     280 .. 0.89
   2 !   23.9   0.2   9.6e-09   4.3e-05       1      56 [.     291     345 ..     291     346 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.3e-10
                 HH..SBSSCEEEETTSBHHHHHHHHHHHTSSEEEEE.ETTTBEEEEEEHHHHHH CS
         CBS   3 di..mtrdvvtvppdttleealelmrekgvsrlPVV.dedgklvGivtlrDllr 53 
                 ++  +++++v + ++ tl++al l+ ++g+sr+PV+ ++ + ++G++ l+Dl+r
  KIR62025.1 224 EVmvPRTEMVWIEESKTLSQALALFLRSGFSRIPVIgESVDDVLGVLYLKDLIR 277
                 554478899***************99**********977778***********8 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 9.6e-09
                 HHHHSBSSCEEEETTSBHHHHHHHHHHHTSSEE.EEEETTTBEEEEEEHHHHHHHHH CS
         CBS   1 Vgdimtrdvvtvppdttleealelmrekgvsrl.PVVdedgklvGivtlrDllrall 56 
                 V+++m++   +vp++ ++ ++l +m +++ ++l  VVde+g   G+vt +D+l+ ++
  KIR62025.1 291 VSELMRP-ATFVPESKPVDDLLSEM-QAARNHLvIVVDEYGGTGGLVTIEDILEEIV 345
                 7889844.449999999********.44458993467****777*********9986 PP

>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.17   7.6e+02      35      56 ..     245     264 ..     233     273 .. 0.78
   2 !   50.5   0.2   3.4e-17   1.5e-13       2      80 ..     361     439 ..     360     440 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.17
                 HHHHHHHHH-S---TT-EEEEE CS
   CorC_HlyC  35 lgGlllellgriPkegesvevd 56 
                 l+ +l + + riP  gesv  d
  KIR62025.1 245 LALFLRSGFSRIPVIGESV--D 264
                 5557888899*******66..3 PP

  == domain 2  score: 50.5 bits;  conditional E-value: 3.4e-17
                 EECTTEEEEETT-BHHHHHHHHTSTTHHCT-SBHHHHHHHHH-S---TT-EEEEEETTEEEEEEEEETTC..EEEEEEEE- CS
   CorC_HlyC   2 eldegsylvdGslpldeleeelglelpeedyeTlgGlllellgriPkegesvevdleglrftVlemdgrr..Ikkvrvekl 80 
                 +l++g  +v ++lp++ l e++++elp +++eT+gGll ++lgr+P +g + ev   glr+  +   grr  I++v v+++
  KIR62025.1 361 RLADGAVRVTARLPVETLGELFDVELPADEVETVGGLLAQALGRVPIPGAEAEVA--GLRLVAEGTTGRRnrIDTVLVSRV 439
                 6899**********************************************66666..888877777766666******986 PP

>> Beta_protein  Beta protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     6e-06     0.027      74     164 ..     232     327 ..     219     352 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6e-06
  Beta_protein  74 qltedgrevleellellseegldiiPviqldrddsarlravkkqierrdkfrgvavRldqddf.sae.i...teeierllaalgleeseldlilDl 164
                    ++ +++++l++ l+l+  +g++ iPvi+ + dd   +  +k+ i+r++++  +a Rl+  ++  ++ +   ++ +++ll+++++ ++ l++++D 
    KIR62025.1 232 MVWIEESKTLSQALALFLRSGFSRIPVIGESVDDVLGVLYLKDLIRRTQGGDPAASRLPVSELmRPAtFvpeSKPVDDLLSEMQAARNHLVIVVDE 327
                   567889999********999**********999999999999999999999************966644798999*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3763.50
//
Query:       KIR62026.1  [L=306]
Description: GTPase Era [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.1e-19   68.5   0.0    8.7e-19   67.7   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
    3.6e-15   55.5   0.1    6.4e-15   54.8   0.1    1.4  1  KH_2         KH domain
    2.6e-10   40.5   0.0    3.4e-05   23.8   0.0    2.2  2  RsgA_GTPase  RsgA GTPase
    1.5e-09   37.6   0.2    6.8e-09   35.4   0.2    1.9  1  FeoB_N       Ferrous iron transport protein B
    1.5e-08   34.9   0.1    0.00018   21.6   0.2    2.2  2  Dynamin_N    Dynamin family
    1.4e-06   28.1   0.0    4.7e-06   26.4   0.0    1.8  1  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
    3.5e-06   26.7   0.2     0.0017   17.9   0.2    2.6  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    4.9e-05   22.7   0.0    0.00011   21.6   0.0    1.5  2  AIG1         AIG1 family
  ------ inclusion threshold ------
       0.07   13.3   0.0         16    5.7   0.0    2.5  2  DUF2773      Protein of unknown function (DUF2773)
       0.15   12.6   0.0       0.32   11.5   0.0    1.7  2  ABC_tran     ABC transporter


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   4.9e-22   8.7e-19       2     113 ..      22     135 ..      21     160 .. 0.72

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 4.9e-22
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS......HHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGlie......gaseekglgkaflaleeadlillvvdaseeklkpl 93 
                 +++vGrpN+GKStL na++g+  ai+s+kp+tTr+++++ ++  +++++lvDtpG ++      g++ +  ++ ++    e+d+i l++ a  e + + 
  KIR62026.1  22 ACFVGRPNAGKSTLTNAIVGTkIAITSNKPQTTRHVIRAVLHRPESQLVLVDTPG-LHrprtllGERLNDLVRSTW---SEVDVIGLCIPAD-EPVGRG 115
                 589*****************9679*****************97779*********.54121111222222222222...2578888888866.555555 PP

                 HHHHHHHHHHTTSEEEEEEE CS
    MMR_HSR1  94 deeleelleeakkplilvln 113
                 d+ +   l e k  ++ v++
  KIR62026.1 116 DRFITGELAELKATVLAVVT 135
                 55555555444444444554 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.1   3.6e-18   6.4e-15       1      78 []     219     295 ..     219     295 .. 0.95

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 3.6e-18
                 HHHHHHHHHT.ECET.EEEEEEECCSCEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEEEEE.EETTTGG CS
        KH_2   1 eipeslavei.kkag.vskveIertanrviiviresqpgivIGkgGsnikkigkelrkdieklegkkVklniv.kVkkpel 78 
                 e+p+s+av++ ++    + ++I     + ++v+r sq++ivIG++ s++k++g+++r++ie+l+g++V+l+++ +V k+++
  KIR62026.1 219 ELPHSIAVVVeEMIPeGNLMKI----YADVYVERPSQKAIVIGHRASRLKEVGTTARRQIEELLGTRVYLDLHvRVAKDWQ 295
                 79*******9776667999***....99***************************************************96 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.9e-08   3.4e-05     101     164 ..      21      80 ..      15      82 .. 0.86
   2 !   14.5   0.0   1.4e-05     0.025       3      98 ..      86     180 ..      84     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.9e-08
                  EEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEESS-SSSS- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglliDtPGfrel 164
                  ++++vG   +GKStL na++++   k++ +s+k ++ +h  +av l++ +++ +l+DtPG++++
   KIR62026.1  21 FACFVGRPNAGKSTLTNAIVGT---KIAITSNKPQTTRHVIRAV-LHRPESQLVLVDTPGLHRP 80 
                  679******************9...8888999999999999887.556666999******9865 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.4e-05
                  --S-EETTTTEES--EEEEEEESTTTT--HHHHHHHHH.HHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTT..SEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase   3 eRknelvrpkvaNvdqllivvslkepelslnlldrfLv.laeekgiepvivlnKiDlleeeeeleelkeelealg..yevllvsaktkegleelkell 97 
                  eR n lvr++ + vd + +++ ++ep   + + drf++ ++ e +++++ v++K+Dl+++++ l e+  ++++lg   +v+ vsa ++++l++l +++
   KIR62026.1  86 ERLNDLVRSTWSEVDVIGLCIPADEP---VGRGDRFITgELAELKATVLAVVTKTDLVDKKR-LAEQLLAVSELGefAAVVPVSAVSGHQLDTLVDVM 179
                  89999************999999976...456788887457788999999************.77777777777755688999999999999999887 PP

                  T CS
  RsgA_GTPase  98 k 98 
                  +
   KIR62026.1 180 T 180
                  6 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.2   3.8e-12   6.8e-09       4     154 ..      23     177 ..      21     179 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 3.8e-12
                 EEEESTTSSHHHHHHHHHTTSEEE.EESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGG.H.HHHHHHHH CS
      FeoB_N   4 alvGnpnvGkttlfnaltgakqkv.gNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatn.l.ernLyLtl 99 
                 ++vG pn+Gk+tl na+ g+k  + +N p +t    ++ l+  ++++ +vD PG +   +   e        + +e+dv+   + a + + + + ++t 
  KIR62026.1  23 CFVGRPNAGKSTLTNAIVGTKIAItSNKPQTTRHVIRAVLHRPESQLVLVDTPGLHRPRTLLGERLNDLVRSTWSEVDVIGLCIPADEpVgRGDRFITG 121
                 589******************8763799*************999***********98776665543333333346778776666555413155789999 PP

                 HHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT.S-EEEEBTTTTBTHHHHHH CS
      FeoB_N 100 qllelgvpvvlalnmideaekkgieidlkkLsekLg.vpvvktsakkkegieellk 154
                 +l+el++ v+ ++ ++d ++kk++  +l ++se  +   vv++sa +++++++l++
  KIR62026.1 122 ELAELKATVLAVVTKTDLVDKKRLAEQLLAVSELGEfAAVVPVSAVSGHQLDTLVD 177
                 **********************998877777765555689**********999986 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.2   9.8e-08   0.00018       3      36 ..      24      57 ..      23      68 .. 0.85
   2 !   11.5   0.0   0.00013      0.24     100     167 ..      66     136 ..      57     137 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 9.8e-08
                EEEBTTTTHHHHHHHHHTS--S---SSS---S-E CS
   Dynamin_N  3 vvGsqSsGKSSvlnaLlgedilprgpnptTrrpl 36
                +vG  ++GKS++ na++g +i  +++ p T r +
  KIR62026.1 24 FVGRPNAGKSTLTNAIVGTKIAITSNKPQTTRHV 57
                79*************************8776544 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00013
                 S-SEEEEE---B-SSSGTTS....HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N 100 vkgltlvDlPGldsvnkrdq....elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                 +++l+lvD+PGl++  +       +lv+++  + d+i +  +a+  + + + +f+  e+ + +  ++ v+tk
  KIR62026.1  66 ESQLVLVDTPGLHRPRTLLGerlnDLVRSTWSEVDVIGLCIPADEPVGRGD-RFITGELAELKATVLAVVTK 136
                 57899*********8775556677999999999999988888888887554.57777777777777777776 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   2.6e-09   4.7e-06       6     141 ..      24     179 ..      21     181 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.6e-09
   PduV-EutP   6 liGkvgsGKttLtqalkgeel..kYkktqaief...........sdeviDtPGey....lenrklysalivtsaeadvialvqdateee...svfppgf 84 
                 ++G+ ++GK tLt+a+ g ++  + +k q++ +           +  ++DtPG +    l  ++l   +++t  e+dvi+l+  a+e+      f  g 
  KIR62026.1  24 FVGRPNAGKSTLTNAIVGTKIaiTSNKPQTTRHviravlhrpesQLVLVDTPGLHrprtLLGERLNDLVRSTWSEVDVIGLCIPADEPVgrgDRFITGE 122
                 89**************997651156787876542222222221033459****872222444556666677889*********9999752226788899 PP

   PduV-EutP  85 asvfnkeviGiitkidlaedeenieaveelLksaG.aekifevsavekegieellkyl 141
                  + ++  v+ ++tk+dl+ d++++      +++ G  + +  vsav+ + +++l++++
  KIR62026.1 123 LAELKATVLAVVTKTDLV-DKKRLAEQLLAVSELGeFAAVVPVSAVSGHQLDTLVDVM 179
                 99999*************.6666666666666666367899***********999876 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   9.7e-07    0.0017       8     193 ..      24     184 ..      20     185 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 9.7e-07
                 EEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESS.S.......GGGHHHHHHHHHT-SEEE CS
    GTP_EFTU   8 iighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPG.H.......vdFskevirglrvlDgav 98 
                 ++g  ++GK+TLt +++ ++ ai++            +     + + T ++  + l+    + ++ l+DtPG H       +  ++ v  + + +D+  
  KIR62026.1  24 FVGRPNAGKSTLTNAIVGTKIAITS------------N-----KPQTTRHVIRAVLH--RPESQLVLVDTPGlHrprtllgERLNDLVRSTWSEVDVIG 103
                 6666677777777777743333333............1.....12345555556666..88999999****9642222222344556667799****** PP

                 EEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU  99 lvvdaveGvepqteevlrlalkegvpiivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvellp 193
                 l + a+e v    + +   + +++  +  +++K D + k++l e+  +v+ +l             ge +  vv++Sa++g +++tl+++++ +lp
  KIR62026.1 104 LCIPADEPVGRGDRFITGELAELKATVLAVVTKTDLVdKKRLAEQLLAVS-EL-------------GE-FAAVVPVSAVSGHQLDTLVDVMTGYLP 184
                 *************************************7777887777777.77.............44.788********************9998 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   6.1e-08   0.00011       5      60 ..      24      78 ..      23     100 .. 0.87
   2 ?   -3.5   0.0         3   5.4e+03      79     115 ..     246     282 ..     238     284 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 6.1e-08
                EESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCC CS
        AIG1  5 lvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglf 60
                 vG+  +GkS+  N+i+g+k+  ++ ++ + t+++ +++  + + +++ +DTPgl 
  KIR62026.1 24 FVGRPNAGKSTLTNAIVGTKIAITS-NKPQTTRHVIRAVLHRPESQLVLVDTPGLH 78
                59******************97777.4777899999999999************96 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3
                 HCTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG CS
        AIG1  79 lseegihalllvlslgrfteedekalktlkelFGeki 115
                 + +++  a+++  +++r++e  ++a ++++el G+++
  KIR62026.1 246 VERPSQKAIVIGHRASRLKEVGTTARRQIEELLGTRV 282
                 5566677777777777777777777788887777665 PP

>> DUF2773  Protein of unknown function (DUF2773)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0091        16      17      60 ..      40      83 ..      30      95 .. 0.82
   2 ?    4.9   0.0     0.016        28      32      74 ..     176     221 ..     165     226 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0091
     DUF2773 17 ePedrilainnPrlavdvkkarlkedPllllelvqPeldllrdl 60
                   +  ++ n P+ +  v +a l +  + l+ +  P l   r l
  KIR62026.1 40 VGTKIAITSNKPQTTRHVIRAVLHRPESQLVLVDTPGLHRPRTL 83
                555667788****************9999999999*99877766 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.016
     DUF2773  32 vdvkkarlkedPlll...lelvqPeldllrdlvktGktrkireear 74 
                 vdv + +l e P l    +   +Pe  l+ +l+++ +   +r+e  
  KIR62026.1 176 VDVMTGYLPESPQLYpddMLTDDPEQVLVAELIREAALEGVRDELP 221
                 8************9644477899***********999999998865 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00018      0.32      16      37 ..      24      45 ..      18     158 .. 0.75
   2 ?   -2.5   0.0       3.7   6.7e+03      61      99 ..     180     218 ..     167     230 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00018
                EEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 16 ivGenGaGKStLlkllagllkp 37
                +vG+  aGKStL +++ g    
  KIR62026.1 24 FVGRPNAGKSTLTNAIVGTKIA 45
                89***************98765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.7
                 EEEE-SS--S-TTSBHHHHHHHTCHHHHHHHSTTGGTTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  61 igvlpqepqlfpeltvrenesdeeiekalsklglkelkd 99 
                  g+lp+ pql p+  + +  +++ +++++++  l++++d
  KIR62026.1 180 TGYLPESPQLYPDDMLTDDPEQVLVAELIREAALEGVRD 218
                 578888888888876666655555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2445.06
//
Query:       KIR62027.1  [L=243]
Description: hypothetical protein TK50_22005 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-12   45.1   0.1    1.7e-11   44.0   0.1    1.7  1  DUF4097   Putative adhesin


Domain annotation for each model (and alignments):
>> DUF4097  Putative adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.1   9.3e-16   1.7e-11      87     251 ..      99     240 ..      21     241 .. 0.63

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 9.3e-16
     DUF4097  87 kassGdlsvekatklkaetlelksssGdltlsnvsaktltvksesGdvtiegseakklklqltsGdieleslsletldltsssGdltlsntklegslti 185
                  + sG++ ++      + ++++  +sG+l+++++++  +   ++sG+v++++++   + l ++sGdi  ++l ++ +d++++sG +t++ + + +s+ +
  KIR62027.1  99 ATGSGNVVLS-----RVGEVDFRLDSGNLEITRATG-AVRAEASSGNVEVDDVRGP-ATLRTSSGDITGSRLGGQ-VDAEAESGGVTVE-LAVPASVRA 188
                 3455555555.....555666666666666666554.3556666666666666543.456666666666666666.6666666666666.333336666 PP

     DUF4097 186 tassGdvdlslpeekkaavdassesGdvslpkkreeeekesnsisaseknakkkvsvstssGDitv 251
                 +a+sGdv+l +p +++++v+ +++sG+ +l+               ++  a+  ++v  +sG++tv
  KIR62027.1 189 HAASGDVQLVVP-AGRYRVRSDVDSGEAELGI-------------VDDPGASLLLDVAADSGNVTV 240
                 666666666666.4666666666666655554.............455666677777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1660.07
//
Query:       KIR62028.1  [L=276]
Description: haloalkane dehalogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-25   88.1   0.1    3.9e-24   85.7   0.1    1.8  1  Abhydrolase_1  alpha/beta hydrolase fold
    4.6e-17   63.4  22.1    5.4e-17   63.1  22.1    1.0  1  Abhydrolase_6  Alpha/beta hydrolase family
      1e-12   47.9   0.7    4.1e-12   45.9   0.7    1.8  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.041   13.3   0.2      0.056   12.8   0.2    1.2  1  DUF3530        Protein of unknown function (DUF3530)
      0.043   13.9   0.1      0.054   13.6   0.1    1.2  1  Thioesterase   Thioesterase domain
       0.29    9.8   0.0        0.4    9.3   0.0    1.2  1  Ndr            Ndr family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.1   1.3e-27   3.9e-24       2     256 ..      22     260 ..      21     261 .. 0.88

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 1.3e-27
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyper 97 
                    ++++lhG+p  s+ w e  + paL  +g ++++lD+rG+    ++ +   + y++  + +d  ++ldalg+d  ++vGh++G  +a+ +aa +p+r
     KIR62028.1  22 PVLLLHGFPQHSGEWDE--VTPALHAAGLRTYALDQRGYSPDARPAEV--EAYRIPELVADAAAVLDALGVDAAHVVGHDWGAIVAWGLAAAHPHR 113
                    8****************..********************999999987..9********************************************* PP

                    EEEEEEESECSSCCHHHHHHHHHHHHH..HCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHH CS
  Abhydrolase_1  98 Vkalvllgaidpaaslieaqrqqaksf..pdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksieq 191
                    V+ l++++       +  a+ ++++++  +++   y+a + ++  + ++    +a+ +r             +++ +  ++   + a gal +   
     KIR62028.1 114 VRTLTAVSV-----PHPAAMAHALATDteQKARSSYIALFRKPGKAEKVLLAFRAVALRRL-------LGGIGDAARVARYADPMRAPGALTAALN 197
                    *********.....66666666666653466777888888888777777777777777744.......6888999999999999999999999999 PP

                    HHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS.EEEEEEETCSSSHHHHS CS
  Abhydrolase_1 192 wpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpk.krlvvisdagHlafleg 256
                    w+   s+k l   +    v++pt +++++ D +v   a + +a++  +  r v++++  H++  e 
     KIR62028.1 198 WYRAMSGKDLAAVGP---VSVPTTYVWSDRDTAVGRVAARACAAHVTGdYRPVTLAGVSHWIPDEA 260
                    999999999999998...999***************9999999996665************97765 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1  22.1   1.8e-20   5.4e-17       1     220 []      23     267 ..      23     267 .. 0.64

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 1.8e-20
                    EEEE--GC.....GCHHHH.HHHHCCTCEEEEE--TTSTS-GGCS--HHH......CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC... CS
  Abhydrolase_6   1 vlllHGagssassWlvapL.aallaagvhvlapDlpGhGrsdpppldled......ladlaalldelaagggpvvlvGHSlGGalalaaapla..l 87 
                    vlllHG++ +++ W   ++  al aag +++a+D +G+ ++d +p ++e+      +ad aa+ld+l+   +++++vGH++G+++a+ +a++   +
     KIR62028.1  23 VLLLHGFPQHSGEWD--EVtPALHAAGLRTYALDQRGY-SPDARPAEVEAyripelVADAAAVLDALG--VDAAHVVGHDWGAIVAWGLAAAHphR 113
                    89************7..7745556666888********.699999888886666656999*******5..7777**************55555334 PP

                    .EE.EEES-..----TTT............S----TTHHHHHHTT-C.CCCHCCH..S-HSCCCCHHHC..CCCHCHCCCGHHHHCCHHCHTT... CS
  Abhydrolase_6  88 vvg.vlldppptalpagl............laaalelllallallrl.lawlsre..plprlfladeda..daawrarlarlaallaglgllp... 162
                    v++  +++      pa++            ++ +++l++++++++   la+   +  +l+rl+ +  da   a+++++ +++ al+a+l +++   
     KIR62028.1 114 VRTlTAVSV---PHPAAMahalatdteqkaRSSYIALFRKPGKAEKVlLAF---RavALRRLLGGIGDAarVARYADPMRAPGALTAALNWYRams 203
                    344433333...223333222233333333333333333333322222233...133355455554443457777777777777777777666555 PP

                    ...CCHHTT-TTGC.EEECTT-CHHHHCHHCCCH..STTEEET...CE...SSS-HHHHSHHHHHHH CS
  Abhydrolase_6 163 ...aaawadlpvpl.lvlggeDplvprllerlla..qagarlp...vvlpgaGHlphleepdevaea 220
                       +aa+ ++ vp+ +v+ ++D +v r ++r+ a  +   + +   v+l+g +H++ +e+p  +aea
     KIR62028.1 204 gkdLAAVGPVSVPTtYVWSDRDTAVGRVAARACAahV---TGDyrpVTLAGVSHWIPDEAPGPLAEA 267
                    5556677777777766745999999999998888542...332333********9999999999986 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.7   1.4e-15   4.1e-12       7     234 ..      23     256 ..      20     261 .. 0.69

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 1.4e-15
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse.gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvag 103
                  v+l+HG+ +hsg  +e++ aL a+G  +yalD+rG+   + ++ ++  ++ ++v+D+aa+++++  +       ++Gh +G+++a  +++ +p++v+ 
   KIR62028.1  23 VLLLHGFPQHSGEWDEVTPALHAAGLRTYALDQRGYSPDArPAEVEAYRIPELVADAAAVLDALGVDA----AHVVGHDWGAIVAWGLAAAHPHRVRT 116
                  89*********************************9998889999999*************9999554....568*******************9985 PP

  Hydrolase_4 104 lilsa...Palkikakl.......kappllklllkllgkllpklqv....snnlkadslsrdpevvaayeadplv.hgkitvrlllelldamkrleer 186
                  l  ++   Pa   +          ka++ + +l +  gk+ + l        +        d ++va+y adp+   g++t+ l +     +k+l + 
   KIR62028.1 117 LTAVSvphPAAMAH--AlatdteqKARSSYIALFRKPGKAEKVLLAfravALR-RLLGGIGDAARVARY-ADPMRaPGALTAALNWYRAMSGKDLAA- 209
                  54443222222222..1234445324444444444444433333334332222.222234566666666.566664666666666666666666554. PP

  Hydrolase_4 187 aakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHel 234
                  +  +++P+  + +++D+ v + a+r+ +++++  d +  + +g  H +
   KIR62028.1 210 VGPVSVPTTYVWSDRDTAVGRVAARACAAHVTG-DYRPVTLAGVSHWI 256
                  455888888888888888888888888888886.88888888877766 PP

>> DUF3530  Protein of unknown function (DUF3530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   1.9e-05     0.056     176     248 ..      68     138 ..      37     141 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.9e-05
     DUF3530 176 hrervrarlqaaiaflnqrgaenivllghgtgAywaarylaekksakvdaLvlvdarepaeaaekqLaeqlak 248
                  + r+ + +  a a+l+  g +   ++gh++gA  a  + a   +  v++L  v+   pa   + +La  +++
  KIR62028.1  68 EAYRIPELVADAAAVLDALGVDAAHVVGHDWGAIVAWGLAAA-HPHRVRTLTAVSVPHPAAM-AHALATDTEQ 138
                 566888999999**************************9999.9************999999.8888877765 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.8e-05     0.054      41     132 ..      65     154 ..      38     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.8e-05
                   HHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEEEEEESCCCCCCHHCHHCCCHTTHHT..HHHHHCCTTHH CS
  Thioesterase  41 depplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavkslflidssapseteaqeasrraedee..fveeltdlggt 132
                    e ++  i el+a  a+ l +   +   +++Gh  G+++A  +A++     + v+ l  + +++p  + +  a++++++     ++++++ g +
    KIR62028.1  65 AEVEAYRIPELVADAAAVLDALGVD-AAHVVGHDWGAIVAWGLAAA---HPHRVRTLTAVSVPHPAAMAHALATDTEQKARssYIALFRKPGKA 154
                   4556778999****99999999999.9****************985...6899**************999999999888877777888776665 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00014       0.4      83     134 ..      73     124 ..      55     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00014
                 HHHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES--- CS
         Ndr  83 ddladqllavldhfklksviglGvgaGAyilarfalkhperveglvLinits 134
                  +l  +  avld + ++++  +G   GA +    a++hp rv  l  +++  
  KIR62028.1  73 PELVADAAAVLDALGVDAAHVVGHDWGAIVAWGLAAAHPHRVRTLTAVSVPH 124
                 567778899************************************9987643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1958.86
//
Query:       KIR62029.1  [L=201]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1404.04
//
Query:       KIR62030.1  [L=166]
Description: hypothetical protein TK50_22130 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.2   0.0        0.2   11.7   0.0    1.5  1  FixH      FixH


Domain annotation for each model (and alignments):
>> FixH  FixH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.1e-05       0.2       9      55 ..      46      94 ..      40     159 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.1e-05
        FixH  9 llflialfavvvvvnltmlylAvstkdglvvddyYk..kGkainqelar 55
                +l+ ++  +++vv   +  + Av+++   v+ddyY   ++++++q++++
  KIR62030.1 46 VLICCGGGGTAVVGLAVSNVQAVREQGRSVTDDYYRglAERKYDQSYDA 94
                6677777889999999999****************76689999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1100.01
//
Query:       KIR62031.1  [L=379]
Description: tRNA-dihydrouridine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-98  330.2   0.0    1.4e-98  329.9   0.0    1.1  1  Dus       Dihydrouridine synthase (Dus)
     0.0035   16.4   0.1     0.0058   15.7   0.1    1.3  1  FMN_dh    FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.9   0.0  1.5e-102   1.4e-98       1     297 [.      13     322 ..      13     334 .. 0.95

  Alignments for each domain:
  == domain 1  score: 329.9 bits;  conditional E-value: 1.5e-102
                 EE---TTTS-HHHHHHHHHTT-SSEEEEEEEE-SSS---HHHHHHH-GGGGGTSCEEEEEE-S-HHHHHHHHHHHHH.TT-SCEEEEESSTTEEETTEE CS
         Dus   1 llaPmagvtdlpfRelvrefgataLvvtemvtakaivreekvrirmlseeeeetplavQlggsdpallaeaAklvad.lgadeIdlNvGCPskkvtrgg 98 
                 +laPmag+t++ fR+l+re g + ++v+em+t+ a+v+++ +++rm+ + ++e+p+++Ql+g dp+ +a+a+++v++   ad+IdlN+GCP++kvtr+g
  KIR62031.1  13 VLAPMAGITNVGFRRLCREQGGG-IYVCEMITTVALVERNPKTLRMIAFGDDERPRSLQLYGTDPEITAAAVRIVVEkDLADHIDLNFGCPVPKVTRRG 110
                 59*********************.****************************************************9889******************* PP

                 EGGGGGGSHHHHHHHHHHHHCCSS...S-EEEEEESESSTTTC.HHHHHHHHHHCT-SEEEEESSECCCTT-CG--CHHHHHHHHH-SS-EEEESS--S CS
         Dus  99 aGaaLlrkpdlvaqivkavvkave...iPvtvkirigiddeeenalelakiveaaGaqaltvHgRtraqnyegtadweaIkevkqavsipviaNGdIkd 194
                 +G+aL+  ++l+a++v+a+v+a +   +Pvtvk+r gidd++ + +e++ ++++aG++a+++HgRt+aq+y+gtadw+aI+ +kqa+ +pv++NGdI++
  KIR62031.1 111 GGSALPWRRRLFARLVRAAVDAASpagVPVTVKMRKGIDDDHLTYVEAGLAAQDAGVAAVALHGRTAAQRYSGTADWDAIATLKQALDVPVLGNGDIWE 209
                 **********************99999************************************************************************ PP

                 HHHHHHHHHHH--SEEEESCHHCCSTTHHHHHHHHHHSC------.HHHHHHHHHHHHHHCHHTT.........CCCCCCHHHHHHHHHHHHHHTTTTC CS
         Dus 195 aedaqaileetGadgvmigrgalgnPwlfaestavktgeaepapp.laeeaeiveehlkkleeel.........gedkglrkirkhlawylkglkkaae 283
                 a+da +++++tG+dgv+igrg+lg+Pwlfa  +a+++g++e++ p l e+a+++++h++ l++++         ge +g  ++rkh+awylkg++  +e
  KIR62031.1 210 ADDALRMVAHTGVDGVVIGRGCLGRPWLFADLEAAFEGRPERRLPtLGEVAATMRRHAELLVDQFtagarnpgrGERDGCTDFRKHVAWYLKGFPVGSE 308
                 *******************************88************9*****************9844444444457899******************** PP

                 HHHHHHHHHHHHCC CS
         Dus 284 lrreleevsdkeea 297
                 lrrel+ +++ ++ 
  KIR62031.1 309 LRRELAMIESLAQL 322
                 *****999988766 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   6.4e-07    0.0058     190     243 ..     172     227 ..     118     234 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.4e-07
                 HHHHHCCCHB-TC--HHHHHHHHHHHSSEEEEEE.E-SHHHHHHHHHT.TESEEEE CS
      FMN_dh 190 aaaefvgkqldpsltwddikwlreqtklplvvKG.vltaedakravea.Gvdgivv 243
                  +++ +++ ++ + +wd i++l++++++p++  G + +a+da r+v++ Gvdg+v+
  KIR62031.1 172 LHGRTAAQRYSGTADWDAIATLKQALDVPVLGNGdIWEADDALRMVAHtGVDGVVI 227
                 33366777778999999999999999999999988999999998876549999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2743.90
//
Query:       KIR62032.1  [L=298]
Description: hydrolase TatD [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-11   43.1   0.0    4.3e-11   42.7   0.0    1.2  1  TatD_DNase  TatD related DNase
    3.6e-05   23.3   0.0    0.00089   18.8   0.0    2.1  1  PTE         Phosphotriesterase family


Domain annotation for each model (and alignments):
>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   4.7e-15   4.3e-11       1     216 [.       4     226 ..       4     255 .. 0.74

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 4.7e-15
                 EEEEE-TTSCCCTTTHHHHHHHHHHTTEEEEE.......EE-SSG......GGHH.HHHH.HHTT.TTTEEEEE---GGGGGCC.CCHHHHHHHH.HHC CS
  TatD_DNase   1 iDaHcHldskefeedreeileraeeagvaavv.......vvgtss......kdsk.avle.lakkypnkvyavlGiHPnevdeasedlleelkel.anv 83 
                 +D H+H++s+       +  er+++agv avv       ++ ts+       ds   ++   a+++  + +a++ + P e+++  ++    l+ l +++
  KIR62032.1   4 FDPHIHMTSR-----TTDDYERMAAAGVRAVVepafwlgQPRTSPdsfadyFDSIiGWEPfRASQFGVRHHATIALNPKEAND--PRCRPVLDLLpRYL 95 
                 799*****93.....56777889999999999666666655555555555313332222213444788888888888888886..5777778889999* PP

                 CCTSEEEEEEEEEET-CCCCCGHHHHHHHHHHHHHHHHHTTEEEEEEEES.....-HHHHHHHHHHCG.GCCSEEEETT--S-HHHHHHHH.HTTEEEE CS
  TatD_DNase  84 khskvvaiGeiGLDyysreestkeaqeevFeeqlrlAkelklplviHlrk.....aeedlleilkeaa.eakakvvlHsfsgsaeeakkfl.klgyyis 175
                 +++ vva+GeiG D  ++      a  e+F +ql+lA  ++lp ++H+ +       e  l+++ e + +++ +vvl +   + e+ + ++ + g++++
  KIR62032.1  96 EKDGVVAVGEIGYDS-MTP-----AEDEAFAAQLALAVAHDLPAMVHTPHrdkarGVERSLAVVAESGiDPG-RVVLDH--LN-EVTAGLVrDSGCWLG 184
                 ***************.554.....7889********************997765544477777777774555.999977..23.3333444588***** PP

                 E-GGGGTTT.THHHHHHHHHS-GGGEEE---TTSSEECCCTT CS
  TatD_DNase 176 lsglltfkn.akelrelvkavpldrlLiETDaPyltpkpyrg 216
                 +s++  +k    ++ el++    +r+L+ + a +++ +p  +
  KIR62032.1 185 FSIYPDTKMsPPRMVELLRLYGTERMLVNSAADWGRSDPLLT 226
                 **9754444466799999999999999999888888777665 PP

>> PTE  Phosphotriesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   9.9e-08   0.00089     127     296 ..     103     254 ..      96     256 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 9.9e-08
                 EEEEE-CTBS-HHHHHHHHHHHHHHHHH---EEEEE.GCCTTCHHHH.HHHHHHTT--GGGEEETTGGCS--HHHHHHHHHTT-EEEE--TT-TTTS-H CS
         PTE 127 ikeigtsgkltpseekvleavaqahkqtGaPisiht.saslragleq.lrilqeeGvDlsrvvvghldtktdvkellelidlGaYleyDlfgvdlispd 223
                 ++eig +  +tp+e+  + a          P ++ht +++  +g+e  l++++e G+D  rvv+ hl++ t    l  + d G++l++  +    +sp 
  KIR62032.1 103 VGEIGYD-SMTPAEDEAFAAQLALAVAHDLPAMVHTpHRDKARGVERsLAVVAESGIDPGRVVLDHLNEVTAG--L--VRDSGCWLGFSIYPDTKMSPP 196
                 3466654.69*****999986444445568999996589999***96489*****************977642..2..458999999988877777764 PP

                 HHHHHHHHHHHHTT-GGGEEE-----SEECCCSCCCCCHHTTHHHHTHHHHHHHTT--HHHHHHHHTHHHHHH CS
         PTE 224 ekRirivhalvdrGyedrillshDittkfralkkelvgyaydllltdviPklkqrGlteeqldkiLvenPkqi 296
                     r+v  l+  G e r+l+   +            g +  ll      ++++ G+t +++d++L  nP  +
  KIR62032.1 197 ----RMVELLRLYGTE-RMLVNSAA----------DWGRSDPLLTRATGEAMLLAGFTADDVDRVLWRNPVEF 254
                 ....567777766754.55543322..........23444444444555567777777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2169.95
//
Query:       KIR62033.1  [L=930]
Description: glycosyl hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-34  118.4   0.0    3.8e-33  115.2   0.0    2.4  2  GSDH             Glucose / Sorbosone dehydrogenase
    2.7e-32  111.3  18.8    1.2e-14   54.8   3.2    4.6  4  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    4.5e-32  111.0   4.3    4.5e-32  111.0   4.3    3.1  3  CBM_6            Carbohydrate binding module (family 6)
      2e-31  108.9   7.0    3.7e-31  108.0   7.0    1.5  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    8.7e-11   41.5   3.2    8.7e-11   41.5   3.2    3.5  4  PKD              PKD domain
    2.2e-06   27.8   0.7    8.1e-06   25.9   0.7    2.0  1  DUF5010_C        DUF5010 C-terminal domain
    1.6e-05   25.6   0.3    1.6e-05   25.6   0.3    4.3  4  Big_7            Bacterial Ig domain
  ------ inclusion threshold ------
        0.1   12.8   0.4       0.74   10.1   0.2    2.3  2  DUF4625          Domain of unknown function (DUF4625)
       0.18   11.8   0.7        1.5    8.8   0.1    2.7  3  DUF5016          Domain of unknown function (DUF5016)
       0.78   10.1   3.7         36    4.8   0.1    3.6  3  ET               ET module


Domain annotation for each model (and alignments):
>> GSDH  Glucose / Sorbosone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.0   2.1e-36   3.8e-33       3     231 ..      42     319 ..      40     340 .. 0.86
   2 ?   -0.5   0.0      0.34   6.2e+02     264     322 ..     397     455 ..     376     460 .. 0.83

  Alignments for each domain:
  == domain 1  score: 115.2 bits;  conditional E-value: 2.1e-36
                 -EEEEEE-TTS-EEEEETTTEEEEEE.TTEE.EEEEE-.----STT-SEEEEEE-TTTTTS-EEEEEEEE-................TTSSEEEEEEEE CS
        GSDH   3 hPwslaflpdgrlLvtersGrlrlvkadgklkepiagvpevvakgqgGlldvalhpdfaenrlvYltyaea.............eeekggagtavarar 88 
                 +P+sla+lpd+++L t r+G++r ++a+g++ ++i ++p v+++ ++G++ + ++p+fa+nr +Yl+ya               + ++ +  ++++r++
  KIR62033.1  42 EPMSLAVLPDRSVLHTARNGTVRRTDASGTT-RTIGTIP-VYTHDEDGMQSLGVDPNFATNRHIYLYYAPPlstpggdapatgtNWSAWQGVNRLSRFT 138
                 79************************99999.9999997.*****************************7799***9988866433334556799**** PP

                 E-SS...-EEEEEEEEEEE---TT-------EEE-TTS-EEEE---TT-......GG................GGG-TT-SSSEEEEE-..TTS..SB- CS
        GSDH  89 lsed.eaaledlevifrqepkvesgahfGsrlafgpdgtLfvtvGdrsk......re................eaqdlsselGkilrln..kdG..svp 160
                 l++d + ++++  +i++         h+Gs + f++ g+L++++Gd s+       +                +a ++++  Gk+lr++  +dG  s+p
  KIR62033.1 139 LNSDfTINMSSKVDILDIGTDRGICCHVGSDMDFDAAGNLYLSTGDDSNpfdsagYSpldertnrnpaydaqrSAGNTNDLRGKLLRIKvnADGtySIP 237
                 *9998899999999***99999999************************8766550055566677788877768889999******997658996669* PP

                 TT-TTT.T-TTS-TTEEEE--SCE---EE-TTT--EEEEEE--SSS...........EEEEEE-TT-B--TTT-S......S- CS
        GSDH 161 adnpfv.gkagakpeiwsyGhRnpqGlaldpdtgeLwesEhGprgg...........DelnlieaGknYGWplvsygeeYsgk 231
                 a+n f+ g+a+ +pei+++G Rnp  + +d++tg ++  + Gp  g            e+n+++  +nYGWp  + g++ + +
  KIR62033.1 238 AGNLFApGTAKTRPEIYAMGFRNPFRISVDKATGIVYVGDYGPDAGstnsnrgpsgqVEFNRVTGPGNYGWPYCT-GTNTTAE 319
                 *****96678999*************************99999988899999999889**************998.5555544 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.34
                 .......TTEEEEEETTTTEEEEEEEEEEEEEEEEEEEEESS-.-EEEEEE-TTS-EEEE CS
        GSDH 264 dafpe.wkgdllvggLksqsllrleldegekvveeerlleelgeriRdVeqgpdGalyvl 322
                 ++fp+ ++g+++++      +  ++l+++++  + ++ +  +g+++ d + gpdGa yvl
  KIR62033.1 397 TKFPQsFDGQFFATEFGRGWIKPIHLNTDGSPGTIDS-FPWVGKQVMDSAFGPDGAYYVL 455
                 5676439999999999999999999998877777777.5678999*************98 PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.3   5.9e+03      17      34 ..     724     741 ..     702     786 .. 0.56
   2 !   49.7   1.4   2.6e-16   4.7e-13      17      89 .]     809     874 ..     791     874 .. 0.85
   3 !   54.8   3.2   6.5e-18   1.2e-14      22      89 .]     854     917 ..     846     917 .. 0.93
   4 !   34.4   0.6   1.6e-11   2.8e-08      16      54 ..     891     929 ..     888     930 .] 0.96

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.3
                      EECTSSSEEEECGCCTBC CS
  RicinB_lectin_2  17 iknvasgkvLdvaggsta 34 
                      + +++ g  L+v  gs++
       KIR62033.1 724 VSSAGAGGTLQVRTGSPT 741
                      334444555555555555 PP

  == domain 2  score: 49.7 bits;  conditional E-value: 2.6e-16
                      EECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  17 iknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      i +   gk+Ldv +gs ++g++vq  tc+gaa qqW++        +i++   gk+Ldv+gg++a+Gt+vq+w
       KIR62033.1 809 I-VGLAGKCLDVRNGSSTDGTQVQLFTCNGAAGQQWTVG----TDSTIRS--LGKCLDVNGGASADGTKVQLW 874
                      5.4458*******************************92....3568888..689*****9999********9 PP

  == domain 3  score: 54.8 bits;  conditional E-value: 6.5e-18
                      SSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  22 sgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                       gk+Ldv+gg+ a+g++vq w+c+g+++q+W  +++g    +++n  +gk+Ldv+g+++a+Gt v++w
       KIR62033.1 854 LGKCLDVNGGASADGTKVQLWSCNGGNAQRWAAQSDG----SLRNTPTGKCLDVSGNNSADGTVVHLW 917
                      39******************************98888....9*************8888********9 PP

  == domain 4  score: 34.4 bits;  conditional E-value: 1.6e-11
                      EEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEE CS
  RicinB_lectin_2  16 tiknvasgkvLdvaggstanganvqqwtcsgaanqqWrl 54 
                      +++n  +gk+Ldv+g++ a+g+ v+ wtc+g+anq+W+l
       KIR62033.1 891 SLRNTPTGKCLDVSGNNSADGTVVHLWTCNGGANQKWTL 929
                      689**********************************97 PP

>> CBM_6  Carbohydrate binding module (family 6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.5      0.67   1.2e+03      47      86 ..     544     582 ..     514     603 .. 0.56
   2 ?   -3.1   0.0         5     9e+03      53      69 ..     622     639 ..     620     648 .. 0.82
   3 !  111.0   4.3   2.5e-35   4.5e-32       1     124 [.     674     796 ..     674     797 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.67
                 EEEEEEEEESSSE.EEEEEEESSTTSSEEEEEEE---SSTT CS
       CBM_6  47 ysvearvasgaag.gsielrldsatgtlvgtvsvpstggwq 86 
                  ++++r  +ga+g +s+++ ++   +++  t++ p+ g+  
  KIR62033.1 544 ATLTVRDPQGATGsSSVTVNVGN--TAPTVTITGPANGSLF 582
                 22333333333334566666666..3333344444455544 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5
                 EEESSSE.EEEEEEESST CS
       CBM_6  53 vasgaag.gsielrldsa 69 
                  as++++ g+i++ +d++
  KIR62033.1 622 IASQNGCsGTITIPVDGE 639
                 588888889999999984 PP

  == domain 3  score: 111.0 bits;  conditional E-value: 2.5e-35
                 ETTCESEEES-EEEE--STTTSEEEE---TT-EEEEEEEEESSTEEEEEEEEEEESSSEEEEEEEESSTTSSEEEEEEE---SSTTEEEEEEEEEEE-S CS
       CBM_6   1 eAesydkqsgvslekataagggkavgyinnGdwlaYkdvdfgsggaysvearvasgaaggsielrldsatgtlvgtvsvpstggwqtyvtvsanvtlpt 99 
                 +Ae+++++sg+s++++++a+ggk+vg i+nG+w+a++ + +++  +  ++arv+s++agg++++r++s+tgt++g+v+vp+tg+w+t++tv+ ++++p 
  KIR62033.1 674 QAEHFKTSSGISTYDKATAEGGKTVGDIQNGEWIAFEPYRIANVTS--FTARVSSAGAGGTLQVRTGSPTGTVLGSVTVPVTGSWETFTTVTGSISNPP 770
                 8*****************99************************99..*************************************************99 PP

                 .EEEEEEEEEECSST---EEEEEEEE CS
       CBM_6 100 .Gvhdlylvftggaeylfnldwfkft 124
                  G+++lyl+f gg++ l+++d f+++
  KIR62033.1 771 tGTTTLYLTFAGGSGTLYDVDAFTLN 796
                 9***********999*******9986 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   7.0   2.1e-34   3.7e-31       2     127 .]     806     927 ..     805     927 .. 0.97

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 2.1e-34
                     EEEEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEETTSEEEETT.TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTTEEE CS
  Ricin_B_lectin   2 sgeirnvasgkCLdvegeska.gapvglydChgskgkQlwtltkdgeirskaqselCldvs..staegakvvlakChkgkgnqrWefdkdgtqir 93 
                     +g+i++   gkCLdv+++s++ g++v+l++C+g++g Q+wt+ +d +irs    ++Cldv+  ++a+g+kv+l++C+ g+++qrW  ++dg+ +r
      KIR62033.1 806 TGRIVGL-AGKCLDVRNGSSTdGTQVQLFTCNGAAG-QQWTVGTDSTIRS---LGKCLDVNggASADGTKVQLWSCN-GGNAQRWAAQSDGS-LR 893
                     6899999.9*************************99.*************...9**********************9.999***********.** PP

                     ETTTSEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  94 hkksgkCLdvkgasksne.klilkkcdsgsdsQkW 127
                     ++ +gkCLdv+g++ +++  ++l++c +g ++QkW
      KIR62033.1 894 NTPTGKCLDVSGNNSADGtVVHLWTC-NGGANQKW 927
                     *****************9******99.******** PP

>> PKD  PKD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       6.9   1.2e+04      25      35 ..     319     329 ..     312     337 .. 0.63
   2 !   41.5   3.2   4.8e-14   8.7e-11       2      68 ..     488     554 ..     486     557 .. 0.92
   3 ?   -0.8   0.0      0.81   1.5e+03       3      22 ..     577     599 ..     576     602 .. 0.75
   4 ?   -3.3   0.3       4.8   8.6e+03       7      23 ..     750     771 ..     745     790 .. 0.52

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 6.9
                 -SEEEEE--SS CS
         PKD  25 nvtysWdfgdg 35 
                 ++  +Wdf   
  KIR62033.1 319 ETYNEWDFASN 329
                 44446999873 PP

  == domain 2  score: 41.5 bits;  conditional E-value: 4.8e-14
                 E---S--BSSEEEEEEEES....-SS-SEEEEE--SS--EEEEETTEEEEEE-SSEEEEEEEEEE-SS-E CS
         PKD   2 sasptvlvpgatvaftaav...pdganvtysWdfgdgsvvqvlseptvthtYlspGeYeVtvtasnavgs 68 
                 sa +t+ ++  tv+f++a    p g  +tysW fgd   +++++  ++  tY++ G+Y++t+t+ ++ g+
  KIR62033.1 488 SADRTSGPAPLTVNFSSAGsadPEGGALTYSWAFGD---GTTSTAANPAKTYTTDGSYTATLTVRDPQGA 554
                 5668899999******99999899************...**************************99876 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.81
                 ---S--BSSEEEEEEEES....- CS
         PKD   3 asptvlvpgatvaftaav...pd 22 
                 a+++ ++ g tv f+++v   +d
  KIR62033.1 577 ANGSLFSFGDTVPFSITVtdpED 599
                 5677889999******9965444 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 4.8
                 --BSSEEEEEEEES......-S CS
         PKD   7 vlvpgatvaftaav.....pdg 23 
                 v+v+g + +ft +      p+ 
  KIR62033.1 750 VPVTGSWETFTTVTgsisnPPT 771
                 5555555555555544443333 PP

>> DUF5010_C  DUF5010 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.7   4.5e-09   8.1e-06      13     104 ..     692     784 ..     679     789 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 4.5e-09
   DUF5010_C  13 vnggwnvtsteaGewlewkeipfkaGavtlkvryattkeaakvrfvi...dgtagpsvelpaTgglqewetvdagtlkieakgyhtvkleiveGn 104
                  +gg +v+++++Gew+ ++   ++   + + +r++++ ++  +++      gt   sv++p Tg++++++tv     + ++++  t+ l++  G+
  KIR62033.1 692 AEGGKTVGDIQNGEWIAFEPYRIAN-VTSFTARVSSAGAGGTLQVRTgspTGTVLGSVTVPVTGSWETFTTVTGSISNPPTGT-TTLYLTFAGGS 784
                 38999*************9777663.34799****9888877777776677899999**************986666655555.88888888775 PP

>> Big_7  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.4        10   1.8e+04      43      60 ..     308     328 ..     294     333 .. 0.53
   2 ?    0.7   4.2       0.5     9e+02      43      70 .]     528     562 ..     482     562 .. 0.75
   3 !   25.6   0.3   8.7e-09   1.6e-05       1      59 [.     569     635 ..     569     659 .. 0.78
   4 ?   -2.2   0.6       4.1   7.3e+03      20      28 ..     761     769 ..     730     804 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 10
                 ....EEEE-SSSEEEEEE--. CS
       Big_7  43 g...lgtdtsapysltwttta 60 
                 +   +gt+t+a    +w+ ++
  KIR62033.1 308 WpycTGTNTTAETYNEWDFAS 328
                 255556666655555666654 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.5
                 ........EEEE-SSSEEEEEE--.....SEEEEEEE CS
       Big_7  43 g.......lgtdtsapysltwttta..ltagthtltV 70 
                 +       ++td  + y++t+t  +  +++g+ ++tV
  KIR62033.1 528 TaanpaktYTTD--GSYTATLTVRDpqGATGSSSVTV 562
                 245554434444..6666666665555999****998 PP

  == domain 3  score: 25.6 bits;  conditional E-value: 8.7e-09
                 XEEEEEE--TT--EB.TSEEEEEEEEE-S..S-E..EEEEE.EETTEE.....EEEE-SSSEEEEEE-- CS
       Big_7   1 PtvtitsPangatvs.ggtvtisasAsdd..ggv..skVef.yvdgtl.g...lgtdtsapysltwttt 59 
                 Ptvtit Pang+ +s g+tv +s +++d+  g++  +kV+  yv g   +   +   +++++s t+t++
  KIR62033.1 569 PTVTITGPANGSLFSfGDTVPFSITVTDPedGSIdcTKVKMtYVLGHDqHghqI--ASQNGCSGTITIP 635
                 9*****************************999977777655555555345433..3445566666664 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 4.1
                 EEEEEEE-S CS
       Big_7  20 tisasAsdd 28 
                 t+++s s++
  KIR62033.1 761 TVTGSISNP 769
                 333333333 PP

>> DUF4625  Domain of unknown function (DUF4625)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.51   9.1e+02     105     130 ..     538     563 ..     530     565 .. 0.84
   2 ?   10.1   0.2   0.00041      0.74      12      74 ..     566     645 ..     557     675 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.51
     DUF4625 105 eaGdYhlvirvtDasGneteesreik 130
                 ++G Y  +++v D +G +   s++++
  KIR62033.1 538 TDGSYTATLTVRDPQGATGSSSVTVN 563
                 78**************9988877765 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00041
     DUF4625  12 tekPvidllevsaepeeeevlkiGetlhfeaklsdne..alasykvdihn..nfDhhshsseakeg.................e 74 
                 +++P+++++     p +++ + +G+t+ f ++++d e   +   kv++     +D+h h+  +++g                 +
  KIR62033.1 566 NTAPTVTIT----GPANGSLFSFGDTVPFSITVTDPEdgSIDCTKVKMTYvlGHDQHGHQIASQNGcsgtitipvdgehddaaN 645
                 689******....79*******************96622588888988763357999999887766577666666666554433 PP

>> DUF5016  Domain of unknown function (DUF5016)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.65   1.2e+03      79     105 ..      62      88 ..      51      93 .. 0.85
   2 ?   -2.6   0.0         3   5.4e+03      84      95 ..     537     548 ..     520     551 .. 0.74
   3 ?    8.8   0.1   0.00086       1.5      26      71 ..     562     611 ..     542     638 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.65
     DUF5016  79 evirtktsGtytgaifvPlykniPdGk 105
                 +v rt +sGt  +  ++P y +  dG 
  KIR62033.1  62 TVRRTDASGTTRTIGTIPVYTHDEDGM 88 
                 7889******99999*****9988886 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3
     DUF5016  84 ktsGtytgaifv 95 
                  t+G+yt+ ++v
  KIR62033.1 537 TTDGSYTATLTV 548
                 47899**99887 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00086
     DUF5016  26 llttdkgPemtiksadaeal..fGdsvdfeiklsd..evplstlkakllf 71 
                 + +++  P +ti+  +  +l  fGd v+f+i+++d  + ++   k k+ +
  KIR62033.1 562 VNVGNTAPTVTITGPANGSLfsFGDTVPFSITVTDpeDGSIDCTKVKMTY 611
                 6789999*****99887777346************755666666666655 PP

>> ET  ET module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1      0.02        36      21      44 ..     813     836 ..     799     842 .. 0.86
   2 ?    2.4   0.1      0.11     2e+02      13      44 ..     846     877 ..     836     885 .. 0.81
   3 ?    1.5   0.1      0.22   3.9e+02      21      44 ..     897     920 ..     881     923 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.02
          ET  21 dGeCasvsltttvngqnvtlytCd 44 
                  G+C  v+  +  +g++v+l+tC 
  KIR62033.1 813 AGKCLDVRNGSSTDGTQVQLFTCN 836
                 7*******9999***********7 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.11
          ET  13 stgaevaCdGeCasvsltttvngqnvtlytCd 44 
                  t ++    G+C  v+  +  +g++v+l++C 
  KIR62033.1 846 GTDSTIRSLGKCLDVNGGASADGTKVQLWSCN 877
                 455666667*******999************7 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.22
          ET  21 dGeCasvsltttvngqnvtlytCd 44 
                 +G+C  vs +   +g+ v+l+tC 
  KIR62033.1 897 TGKCLDVSGNNSADGTVVHLWTCN 920
                 6*******999999999******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (930 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 6172.30
//
Query:       KIR62034.1  [L=323]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-84  284.2  33.6    1.2e-84  284.0  33.6    1.0  1  FecCD     FecCD transport family


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.0  33.6   6.8e-89   1.2e-84       2     312 .]       8     317 ..       7     317 .. 0.99

  Alignments for each domain:
  == domain 1  score: 284.0 bits;  conditional E-value: 6.8e-89
       FecCD   2 lllllllslllgavkispsevfeallgkadsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllgslsl 100
                 ll +++ls+++ga +++p++v++al g ++++++ +v+  rlpr+la+llvGa+L+vaGal+Q+ trN La+P+ilG+++gaa+++++++++l g +s 
  KIR62034.1   8 LLGSVVLSVFVGANPVPPADVWAALRGAGSDTAQYVVWGQRLPRTLAGLLVGAGLGVAGALMQAFTRNALAEPGILGVNAGAAAFVAVGIAFL-GVTSP 105
                 67789***************************************************************************************8.***** PP

       FecCD 101 falplaaflgallalllvllla.rkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllllllar 198
                 ++++++a+lgall++  v+++      +a+p++l+++G+a +a+l++lt+ ++l+ +++++++++ w +Gsl +++   vl +l+l++++ll+ ll ar
  KIR62034.1 106 AGYMWLALLGALLVATAVYAVGgAADLRATPTRLLVTGVATGAVLAGLTTGITLT-HPDTFDRMRGWNAGSLLERDTAVVLPVLPLIVAGLLAGLLAAR 203
                 *********************9888999*************************99.******************************************* PP

       FecCD 199 kldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptelpvgiv 297
                  l++lalg ++A++ Gv+  r+rll+l +v+ll++ a a++Gpi+FvGL+vPh++r  vg+d r++l  s l+G++l+llad+++r+++ p+e+pvgiv
  KIR62034.1 204 SLNALALGPDLAAAQGVSLVRTRLLVLGAVTLLAGGASAIAGPISFVGLVVPHLVRWGVGTDQRRILAGSLLAGGILVLLADVVGRIAVLPSEMPVGIV 302
                 *************************************************************************************************** PP

       FecCD 298 taliGapffiylllr 312
                 ta++Gap++i+l +r
  KIR62034.1 303 TAFVGAPVLIALARR 317
                 ************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2641.09
//
Query:       KIR62035.1  [L=298]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-51  175.5   0.0    1.6e-51  175.3   0.0    1.0  1  NMT1            NMT1/THI5 like
     0.0055   16.4   0.0      0.011   15.4   0.0    1.6  1  NMT1_2          NMT1-like family
  ------ inclusion threshold ------
      0.018   14.4   1.2      0.027   13.8   1.2    1.2  1  LysR_substrate  LysR substrate binding domain


Domain annotation for each model (and alignments):
>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.3   0.0   2.7e-55   1.6e-51       1     215 [.       8     223 ..       8     224 .. 0.97

  Alignments for each domain:
  == domain 1  score: 175.3 bits;  conditional E-value: 2.7e-55
                 -GGGHHHHHHHHTTHHHHTTEEEEEE--.SSTTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--EEEEEECCC--SSGGGGTTSEEEE CS
        NMT1   1 npnhaglyvAkekGYFkeeGldVeivep.adpsdatelvasgkadfgvsyqesllaarakglpvvsvaallqeplsglivlkdsgikspkDLkGkrigy 98 
                 +pn aglyvA + G+++e+GldVe+    a ++d++e++ +g++++gv  +++ll++ra+g+p+ +vaa++++ ++++++ +++gi +p+DL Gkr+++
  KIR62035.1   8 WPNAAGLYVASSAGWYREAGLDVELTVFdALRGDTLEHLRRGEVHLGVFPTNRLLVRRAAGQPLHAVAAINHRGMETIQTVTGRGIARPRDLVGKRLAL 106
                 69**********************98776999******************************************************************* PP

                 -S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHH.HHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT-----SEEEEEEHHHHHH-HHHHH CS
        NMT1  99 vgspfekallkallakdggdpsdvtlvnvggtslak.alltgkvDaaiggyenwegvelesegkelrifaladlgvpdyyslvlitnekllkenpelvk 196
                 +++p++ a++++l+a+dggdp+ v+lv+ g+++l+  ++++g vDa++ggy++w+++++++ g+++ +++++++g p y+s++l t  +l + +++l++
  KIR62035.1 107 NPTPRGVAMVRHLVAADGGDPDGVELVDSGYRELSVdDIAAGHVDATFGGYWAWDALMADLPGERRVVWPVDEIGAPPYHSYLLGTGPAL-DGRDDLLA 204
                 **********************************988***********************************************999985.666***** PP

                 HHHHHHHHHHHHHHHSHHH CS
        NMT1 197 kFlrAlkkGyeyalahPee 215
                  Fl+++++Gy +a+++Pe+
  KIR62035.1 205 TFLEVTARGYRAATDDPEQ 223
                 *****************97 PP

>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.9e-06     0.011      13      96 ..       6      86 ..       5     157 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.9e-06
      NMT1_2 13 ialtdaaplvvakekglfakeGltvelekqasw.aelrdkllagelDaahvltpapllidlGiggakadmkvlaslnlnGqaitl 96
                 ++ +aa l va+ +g++ + Gl+vel+ + +  + +++ l  ge+ ++++ t  +l + +     +++++++a++n+ G+  + 
  KIR62035.1  6 HPWPNAAGLYVASSAGWYREAGLDVELTVFDALrGDTLEHLRRGEVHLGVFPTNRLL-VRRAA---GQPLHAVAAINHRGMETIQ 86
                67788999*********************99862679**************554443.33333...58************97554 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.2   4.6e-06     0.027      29     185 ..      24     189 ..      14     206 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.6e-06
                     HHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTS.......GGGGSSSE.CGGGGCTSEEEEESTTST. CS
  LysR_substrate  29 raryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdh.......pLargepv.sledLadeplilleegsg. 114
                     r++  +vel +  +   + l+ l++ge++l++     + ++l +r+ a +pl++va+ +h           g+ + +++dL + +l l + + g 
      KIR62035.1  24 REAGLDVELTVFDALRGDTLEHLRRGEVHLGVF----PTNRLLVRRAAGQPLHAVAAINHrgmetiqTVT-GRGIaRPRDLVGKRLALNPTPRGv 113
                     67777899999999999**************99....999********************7777664444.55555************9988888 PP

                     ..HHHHHHHHHHCT.TEEC..EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEE CS
  LysR_substrate 115 ..lrdlledalrea.glkp..rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relyl 185
                        r l+ +  ++  g+++   +  e++  + +++ v a  G  ++ + +++d + + r+v +p++e  +p  + yl
      KIR62035.1 114 amVRHLVAADGGDPdGVELvdSGYRELSVDDIAAGHVDATFGGYWAWDALMADLPGERRVV-WPVDEIGAPpYHSYL 189
                     8644444444444368888999999999999999*****************9999999999.999988555466555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2207.51
//
Query:       KIR62036.1  [L=856]
Description: permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-15   55.3   7.1    2.7e-11   43.8   0.3    5.8  7  FtsX      FtsX-like permease family
  ------ inclusion threshold ------
       0.01   15.9   2.5      0.056   13.5   0.8    2.7  2  AlaE      L-alanine exporter


Domain annotation for each model (and alignments):
>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.4      0.43   3.9e+03      72      88 ..      21      37 ..      15      52 .. 0.48
   2 ?    0.0   0.5      0.13   1.2e+03      71      85 ..     272     285 ..     256     294 .. 0.47
   3 !   23.6   1.6   5.9e-09   5.3e-05       1      89 [.     297     384 ..     297     392 .. 0.79
   4 ?   -2.6   2.0      0.89     8e+03      88      88 ..     430     430 ..     411     483 .. 0.52
   5 ?    0.1   0.5      0.13   1.1e+03      30      52 ..     503     525 ..     499     543 .. 0.67
   6 ?   -3.5   1.8       1.7   1.6e+04      21      38 ..     730     747 ..     724     754 .. 0.50
   7 !   43.8   0.3   3.1e-15   2.7e-11       2      96 .]     759     848 ..     758     848 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.43
        FtsX 72 iivlllllallagllsi 88
                ++++++  ++++g + +
  KIR62036.1 21 GLAVIVAAFVVFGTVLA 37
                22222222222222222 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.13
        FtsX  71 iiivlllllallagl 85 
                  +++++++ a+l+ +
  KIR62036.1 272 MFVAIAVVAAVLV-A 285
                 1122222222222.2 PP

  == domain 3  score: 23.6 bits;  conditional E-value: 5.9e-09
        FtsX   1 kreigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfs..selkisidlitvliiivlllllallagllsis 89 
                 +r++++lra+G+ ++ +++ l++e++ ++lva ++G+++++ +   l  vl  +  +  s  ++     +v+++++l++ la+la   ++ 
  KIR62036.1 297 MRQLALLRAVGAPRAGLFRALVVEGAGTGLVAGLAGVLAAYGVGHGLPPVLRGFGLAvaSPGHPVAAAVAVALGAALVTALAVLA---PAV 384
                 6899********************************8888888888888887776655577777777777777777777777777...333 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 0.89
        FtsX  88 i 88 
                 +
  KIR62036.1 430 A 430
                 1 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.13
        FtsX  30 lvalviGlglgllaaqllsdvll 52 
                 +v+ v++lg+ l+a  l+ +  l
  KIR62036.1 503 AVSVVVALGVTLVAGALVGSASL 525
                 56777777777776666555444 PP

  == domain 6  score: -3.5 bits;  conditional E-value: 1.7
        FtsX  21 llteillitlvalviGlg 38 
                 +l+ +l +t+v +v+G+g
  KIR62036.1 730 VLLSLLGLTVVVAVVGVG 747
                 334444444444455544 PP

  == domain 7  score: 43.8 bits;  conditional E-value: 3.1e-15
        FtsX   2 reigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiskilkkep 96 
                 re g+lra+Gm+++++  +l++e+ l++++++++Gl+l++ +++l  + l++      +++ ++  +++ +++ l++ + lagll+++++++ +p
  KIR62036.1 759 RESGLLRAVGMSRRRLGAMLTVEAGLYGVLGAALGLLLAWPYSWLTVAALGQD-----APVEFPAGQLAGVVLALTVATALAGLLPARRAARVSP 848
                 899********************************999999999988888665.....9********************************9987 PP

>> AlaE  L-alanine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.8   6.3e-06     0.056       5      66 ..     258     320 ..     254     335 .. 0.89
   2 ?    0.2   0.0     0.078     7e+02      34      58 ..     778     801 ..     763     812 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.3e-06
        AlaE   5 rlrsavaDtlalvvfcfivgmlieilisGmsfeqslasRllsipvniliawP.yglyRDallr 66 
                 ++ + v D +alv  +++++++  +l++  +f+ + a R+ ++++  +++ P  gl+R  +++
  KIR62036.1 258 QVSERVQDLFALVTMFVAIAVVAAVLVATSTFRIVFAQRMRQLALLRAVGAPrAGLFRALVVE 320
                 5678899**************************************999999945899998887 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.078
        AlaE  34 msfeqslasRllsipvniliawPyg 58 
                 +++e  l   +l++++ +l+awPy+
  KIR62036.1 778 LTVEAGLY-GVLGAALGLLLAWPYS 801
                 44444443.3678888999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (856 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1054  (0.0587874); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.25s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 5871.64
//
Query:       KIR62037.1  [L=420]
Description: FAD-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-18   67.1   1.6    2.3e-18   66.2   1.6    1.4  1  FAD_binding_4   FAD binding domain
    1.3e-18   67.8   0.0    2.1e-18   67.1   0.0    1.2  1  ALO             D-arabinono-1,4-lactone oxidase
     0.0023   17.7   0.7     0.0051   16.6   0.7    1.5  1  FAD_binding_5   FAD binding domain in molybdopterin dehydroge
  ------ inclusion threshold ------
      0.021   13.7   1.8       0.05   12.5   1.8    1.6  1  Androgen_recep  Androgen receptor


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   1.6   5.2e-22   2.3e-18      25     138 ..      34     144 ..      18     145 .. 0.91

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 5.2e-22
                    SCEEEESSSTTEESTTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCGSBHHHTTTTT-EETTEEGG--HH CS
  FAD_binding_4  25 lpvlvrGgGssllgqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgipgtvGGaiatnagGygsekyGlir 120
                     +++++G+G+s+++    t g +++l  l + +e+d+e+ t+tv a  ++gdl+ +l+a+g++l+  ++s+   +v+Ga+at ++G+g  + G+++
     KIR62037.1  34 DRIRAVGTGHSFNRLG-DTAGDLVSLAGLPQTVEVDRERATVTVAAAMRYGDLATRLHAAGFALP-TMASLPHISVAGAVATATHGSGDGI-GNLA 126
                    4799*********777.49999****88************************************9.9*******************88887.6*** PP

                    GTEEEEEEEETTSEEEEE CS
  FAD_binding_4 121 dnvlglevvladGevvrl 138
                      v  le+v+adGe++++
     KIR62037.1 127 TAVSALELVTADGELLTV 144
                    ***************997 PP

>> ALO  D-arabinono-1,4-lactone oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   4.7e-22   2.1e-18     128     259 ..     290     416 ..     287     417 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 4.7e-22
         ALO 128 vnEwaiplekgpevLrelkaliekaaelkvhfPievRcsnadrplLsvtndrdtlyinatmYrpfetnvptekyfkafedimkkagGrPHWaKnfllta 226
                 ++E+++p+  +  +L +l+ l ++ a   v    e+R+++ad+ +Ls++++rd+l + +t     +    + +   ++e+ ++ ++ rPHW+K f+l++
  KIR62037.1 290 QSEYHLPRAAAAGALAALDPLADRIA--AVLQVCELRTVAADELWLSPQYGRDSLAVHFTWIGDGD---AVAPVLAEVERALAPFAPRPHWGKVFTLDP 383
                 68*******************99988..888889************************99988888...799999************************ PP

         ALO 227 edlkelYpdlkkflkvRkklDPegvFlnewler 259
                 ++++ +Yp++ +f+++  +lDP g F  + l+r
  KIR62037.1 384 AAVAAAYPRFADFAALAGELDPAGKFRTDLLDR 416
                 **************************9998887 PP

>> FAD_binding_5  FAD binding domain in molybdopterin dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.7   1.1e-06    0.0051       6     139 ..      18     139 ..      13     147 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.1e-06
                    EE-SSHHHHHHHHHHCTTSEEESS-TTHHHHHHHTT---SEEEEGTTSGGGS-EEEESSEEEEETTSBHHHHHHHHHHHHHHHHSHHHHHTSS-HH CS
  FAD_binding_5   6 lrpasleealallaaepdaklvaGgtdlgvlmkekvarpehliditgipelkeieeteggleiGAavtlselaaealvrerypalsealekiAspq 101
                    +rp+ l+e+ +l+a +++++ v+ g+++  l ++      +l++++g+p+  e++++   +++ Aa+++ +la       r+ a   al ++As  
     KIR62037.1  18 HRPTGLDELRRLVAGSDRIRAVGTGHSFNRLGDTAG----DLVSLAGLPQTVEVDRERATVTVAAAMRYGDLA------TRLHAAGFALPTMASLP 103
                    89*************************998887776....9*******************************4......44556677888888877 PP

                    HHHH-BHHHHHHHT-TT.-SSHHHHHHTTEEEEEEESSE CS
  FAD_binding_5 102 iRnvaTiGGNlataspi.sDlapaLlaldAevelrsaeg 139
                    +    +++G +ata++  +D +  L+++ + +el +a+g
     KIR62037.1 104 H---ISVAGAVATATHGsGDGIGNLATAVSALELVTADG 139
                    5...67788888888876677777777777777777666 PP

>> Androgen_recep  Androgen receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.8   1.1e-05      0.05     414     470 ..      68     132 ..      63     142 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.1e-05
  Androgen_recep 414 dygsawaaaaaqcrygdlaslahgagaaaaaaa........aaaaaaaagpgsgspsaaaasssw 470
                     d   a  + aa  rygdla+  h ag a  + a         a+a+a+ g g g    a+a s+ 
      KIR62037.1  68 DRERATVTVAAAMRYGDLATRLHAAGFALPTMAslphisvaGAVATATHGSGDGIGNLATAVSAL 132
                     555677889999********99****875433211111100334444455555666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3111.06
//
Query:       KIR62038.1  [L=305]
Description: lipase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-07   31.0   0.1     0.0001   21.7   0.0    2.5  2  Hydrolase_4    Serine aminopeptidase, S33
    3.7e-06   26.6   0.0    1.6e-05   24.6   0.0    2.1  2  DLH            Dienelactone hydrolase family
      8e-05   22.2   1.7     0.0019   17.7   0.2    2.8  4  Peptidase_S9   Prolyl oligopeptidase family
    9.2e-05   21.1   0.0     0.0067   15.0   0.0    2.3  2  PAF-AH_p_II    Platelet-activating factor acetylhydrolase, is
      0.007   16.0   0.2       0.22   11.1   0.1    2.2  2  Abhydrolase_1  alpha/beta hydrolase fold
     0.0084   14.8   0.0      0.013   14.2   0.0    1.2  1  AXE1           Acetyl xylan esterase (AXE1)
  ------ inclusion threshold ------
      0.036   13.9   0.3        0.1   12.4   0.3    1.7  1  Abhydrolase_3  alpha/beta hydrolase fold
        0.1   11.9   0.7       0.24   10.7   0.6    1.6  1  LIP            Secretory lipase
       0.13   12.1   0.0       0.24   11.2   0.0    1.6  1  Abhydrolase_5  Alpha/beta hydrolase family
       0.13   11.8   1.6        1.1    8.9   1.7    2.1  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   5.6e-08    0.0001       5     105 ..     100     196 ..      97     206 .. 0.87
   2 !    6.8   0.0     0.002       3.6     185     233 ..     205     255 ..     198     260 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 5.6e-08
  Hydrolase_4   5 avvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafv..ekvkeehpelplfllGhSmGGliallyllrypdk 100
                  ++v +++G++++ +++a l+ +La qGf v+++D      ++  rg     +++++ l+ +v  ++v+++  + +l ++G SmGG  +l+++ ++p+ 
   KIR62038.1 100 GAVAIAPGFTNTQSAVAWLGPRLASQGFVVATIDTLSVYDQPASRG-----TQLLAALDYLVgtSAVRSRIDRNRLAVMGYSMGGGGTLAAANTRPS- 191
                  689********************************98888888888.....77888888887436677777788******************99999. PP

  Hydrolase_4 101 vagli 105
                  ++++i
   KIR62038.1 192 LQAAI 196
                  88776 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.002
  Hydrolase_4 185 eraakitlPllllhGeaDkvvdpeas.relyerlgsk.dktlklypglyHe 233
                  ++ + +++P+l++ +e+D+  + + + + +y +l+++ dk +   + + H+
   KIR62038.1 205 KNWSGVRVPTLVVGAENDTTAPVASHsEPFYTSLPASlDKAYLELNAATHS 255
                  5555678**************99887699******9999999999988886 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   1.9e+03      98     127 ..      76     104 ..      58     116 .. 0.60
   2 !   24.6   0.0   8.8e-09   1.6e-05      76     162 ..     146     229 ..      85     255 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.1
         DLH  98 kkvgvvGfCmGGalalllaaev.pevdaava 127
                  + +v+Gf  GGa +++  +    ++ a+++
  KIR62038.1  76 ARSAVTGF--GGATVWYPTSTAeGTFGAVAI 104
                 44455554..666666554444345555555 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 8.8e-09
         DLH  76 ekvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaevpevdaavafYGlspekeleeaakikapilalfgeeDefipade 162
                  ++l+ l+  v + + +++ + ++++v+G+ mGG  +l+ a   p ++aa++  G    ++ ++   + +p l++ +e+D+  p ++
  KIR62038.1 146 TQLLAALDYLVGTSAVRSRIDRNRLAVMGYSMGGGGTLAAANTRPSLQAAIPLTG---WHTTKNWSGVRVPTLVVGAENDTTAPVAS 229
                 566666777788888889999*******************************999...777888999*************9988775 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.6   4.7e+03      74     103 ..      84     113 ..      81     127 .. 0.77
   2 ?   -1.4   0.0      0.76   1.4e+03      10      21 ..     122     133 ..     110     134 .. 0.83
   3 !   17.7   0.2   1.1e-06    0.0019      48      88 ..     148     192 ..     142     204 .. 0.79
   4 ?    2.6   0.0     0.044        78     138     175 ..     205     245 ..     192     277 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.6
                   HHHHHHHHHHH-GGG-SEEEEESE---CCC CS
  Peptidase_S9  74 GGyltgaalnqrpdlFkaavaevpvvdvlr 103
                   GG ++      +  +F+a++++ ++++  +
    KIR62038.1  84 GGATVWYPTSTAEGTFGAVAIAPGFTNTQS 113
                   777766666678889999999999988765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.76
                   HHCCT-EEEEE- CS
  Peptidase_S9  10 ladrGyvvvvan 21 
                   la++G+vv+ ++
    KIR62038.1 122 LASQGFVVATID 133
                   689******997 PP

  == domain 3  score: 17.7 bits;  conditional E-value: 1.1e-06
                   HHHHHHHH....HHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG CS
  Peptidase_S9  48 fiaaaeal....akegyvdserlaitGgSyGGyltgaalnqrpdl 88 
                   ++aa+++l    a ++ +d++rla++G S GG  t+aa+n rp+l
    KIR62038.1 148 LLAALDYLvgtsAVRSRIDRNRLAVMGYSMGGGGTLAAANTRPSL 192
                   567777773332335579**********************99987 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.044
                   GG--.---EEEEEEETT-SSS-T.HHHHHHHHHHH.--S-S CS
  Peptidase_S9 138 dnvk.aypplLlihGlaDdrvpp.aealklvaaLq.kkgkn 175
                   +n   + +p+L++ +++D+  p+ ++++ +++ L  + +k 
    KIR62038.1 205 KNWSgVRVPTLVVGAENDTTAPVaSHSEPFYTSLPaSLDKA 245
                   44446889***********9998678999999987555555 PP

>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.0    0.0098        18     118     134 ..     117     133 ..      93     148 .. 0.80
   2 !   15.0   0.0   3.7e-06    0.0067     212     282 ..     152     219 ..     134     229 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0098
                  HHHHHHHHTT-EEEEE- CS
  PAF-AH_p_II 118 alcielAskGfvvaavE 134
                   l+  lAs+Gfvva+++
   KIR62038.1 117 WLGPRLASQGFVVATID 133
                  46789*********975 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 3.7e-06
                  S--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH-TTS-EEEEES---TTS-GGGGGG--S-EEEEEE CS
  PAF-AH_p_II 212 ldsdfdlqqlKdnldtskvaviGHsFGgAtvikslsedteFrcaialDaWmlPveeevyskvrqPllfins 282
                  ld     + ++  +d++++av+G s Gg  ++++       + ai l +W      +  s vr P+l++ +
   KIR62038.1 152 LDYLVGTSAVRSRIDRNRLAVMGYSMGGGGTLAAANTRPSLQAAIPLTGWH---TTKNWSGVRVPTLVVGA 219
                  5555556778999*************************************6...56778888888888765 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00012      0.22       5      96 ..     104     191 ..     100     209 .. 0.72
   2 ?    3.1   0.0     0.034        62     210     239 ..     210     240 ..     197     257 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                    EE-STTT..CGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH...HHHHHCTTSSEEEEEETHHHHHHHHHHHHHG CS
  Abhydrolase_1   5 ilhGlpg..ssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddld...rildalgddkltlvGhSmGGmialayaaeyp 95 
                    i +G+++  s+  w     +p La +gf v ++D + v   +++  +     ++ +  d+l    +++ + +  +l+++G+SmGG   la+a   p
     KIR62038.1 104 IAPGFTNtqSAVAWL----GPRLASQGFVVATIDTLSVYDQPASRGT-----QLLAALDYLVgtsAVRSRIDRNRLAVMGYSMGGGGTLAAANTRP 190
                    666777744444444....4777777888888888877666666665.....4555566666676889999999****************999888 PP

                    G CS
  Abhydrolase_1  96 e 96 
                    +
     KIR62038.1 191 S 191
                    7 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.034
                    HHSEEEEEEETTCSSSCH.HHHHHHHHCHTS CS
  Abhydrolase_1 210 vlaptlvisgtsDplvpp.kaledlaqllpk 239
                    v +ptlv+++++D  +p  +++e +   lp 
     KIR62038.1 210 VRVPTLVVGAENDTTAPVaSHSEPFYTSLPA 240
                    567**************98877766666665 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   7.2e-06     0.013     169     203 ..     163     197 ..     150     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.2e-06
                 TTEEEEEEEEEEETHHHHHHHHHHHH-SS-SEEEE CS
        AXE1 169 pevDeeRvavlGasqGGalalavaalekrikavva 203
                 + +D +R+av+G s GG+ +la+a   + ++a+++
  KIR62038.1 163 SRIDRNRLAVMGYSMGGGGTLAAANTRPSLQAAIP 197
                 679**********************9999999876 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   5.8e-05       0.1      53      90 ..     149     189 ..     141     266 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.8e-05
                    HHHHHHHHHTHH.HHTETTCEEEEEEETHHH..HHHHHHHH CS
  Abhydrolase_3  53 laalrwlaeqaw.elgadpsrivlaGdSaGG..nlaaaval 90 
                    laal +l+ +++ + ++d +r++++G S GG  +laaa ++
     KIR62038.1 149 LAALDYLVGTSAvRSRIDRNRLAVMGYSMGGggTLAAANTR 189
                    7899999999988999************9871145555544 PP

>> LIP  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.6   0.00013      0.24      24      95 ..     124     192 ..     108     203 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
         LIP  24 keGyyVvvpDyeGpkstftvgrqsgkavLdsiraalksekvtgiksdakvalwGYSgGslAsawAaelqpeY 95 
                 ++G+ V + D     s++  +   g + L ++   + + +v +  +  + a++GYS G+  + +Aa+  p+ 
  KIR62038.1 124 SQGFVVATIDT---LSVYDQPASRGTQLLAALDYLVGTSAVRSRIDRNRLAVMGYSMGGGGTLAAANTRPSL 192
                 46666666663...4788888888888888888888888888888999*******************99986 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013      0.24      38     120 ..     149     231 ..     101     256 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
  Abhydrolase_5  38 lavlgknkaeeiikeapklekfvvgGhslGGvvasrfaaeeekiegvvflasYPekdelselskkvlsivgteDgvlnvksle 120
                    la l     ++++++  + +++ v G+s+GG  +   a+   ++++++ l+ + +  + s   +++l + +++D  ++v s +
     KIR62038.1 149 LAALDYLVGTSAVRSRIDRNRLAVMGYSMGGGGTLAAANTRPSLQAAIPLTGWHTTKNWSGVRVPTLVVGAENDTTAPVASHS 231
                    566666666778888888999**********99999999999*************999****************999987765 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.7   0.00059       1.1      97     140 ..     164     206 ..      47     232 .. 0.82
   2 ?    1.5   0.0       0.1   1.9e+02     222     267 ..     205     254 ..     201     256 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00059
                    TTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEEECE-S-TCC CS
  Peptidase_S15  97 pwsnGkVgmtGiSYlGttqllaaatgvpalkaivpeaaisdlyd 140
                         + +++G S +G   l+aa+   p l+a++p+ +++   +
     KIR62038.1 164 RIDRNRLAVMGYSMGGGGTLAAAN-TRPSLQAAIPLTGWHTTKN 206
                    5566799*******9998888777.889*********9987666 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.1
                    HHHCT--S-EEEEEECCSSTTC..CHHHHHHHHHCCTT-..EEEEECECT CS
  Peptidase_S15 222 edadkvkapvllvgGwnDwnvk..ngaiklyealkapgv..klilgpwtH 267
                    +++++v++p+l+vg+ nD++     ++  +y  l+a     +l l+ +tH
     KIR62038.1 205 KNWSGVRVPTLVVGAENDTTAPvaSHSEPFYTSLPASLDkaYLELNAATH 254
                    57899*************64332255666666666654455666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 1867.22
//
Query:       KIR62039.1  [L=691]
Description: prolyl oligopeptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-53  179.2   0.1    1.3e-52  178.4   0.1    1.4  1  Peptidase_S9    Prolyl oligopeptidase family
    2.4e-21   76.1   0.0    8.8e-21   74.2   0.0    1.7  2  Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propel
    0.00021   21.2   0.7    0.00057   19.8   0.7    1.7  1  Abhydrolase_3   alpha/beta hydrolase fold
    0.00061   19.1   0.3       0.79    8.9   0.1    2.2  2  Hydrolase_4     Serine aminopeptidase, S33
     0.0013   18.4   0.0     0.0024   17.6   0.0    1.3  1  Esterase        Putative esterase
     0.0065   15.4   0.0       0.01   14.8   0.0    1.2  1  Tannase         Tannase and feruloyl esterase
     0.0074   15.8   0.5      0.075   12.5   0.2    2.5  2  Esterase_phd    Esterase PHB depolymerase
     0.0089   16.1   0.0      0.018   15.2   0.0    1.4  1  Abhydrolase_4   TAP-like protein
  ------ inclusion threshold ------
       0.33   10.8   0.5         19    5.1   0.0    2.5  3  BAAT_C          BAAT / Acyl-CoA thioester hydrolase C termina


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.4   0.1   6.5e-56   1.3e-52       9     210 ..     486     688 ..     477     690 .. 0.96

  Alignments for each domain:
  == domain 1  score: 178.4 bits;  conditional E-value: 6.5e-56
                   HHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHH CS
  Peptidase_S9   9 lladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlryd 105
                   +l +rG  +vvanirG+g+yG a+h+a  r++  + ++Df a+a  l+++g++++ rl+++GgS+GG+l+g++l++ p+lF+a+va+vp +d++ry+
    KIR62039.1 486 WL-ARGGSYVVANIRGGGEYGPAWHRAALRENRPRAYEDFAAVAADLVARGITTPARLGMEGGSNGGLLAGVMLTRYPELFGAVVAHVPLLDMRRYH 581
                   66.89******************************************************************************************** PP

                   CSTTSTHH.HCCCC--TTTCHHHHHHHHHH-CGGG--...---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHH.HH CS
  Peptidase_S9 106 sdtdllte.eymewgnpeeneegykelspyspldnvk...aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakv.ee 197
                   +   l ++ ++ e+g+p +++++  +l  ysp++nv     ypp+Ll++++ Ddrv+p +a k++a+L+++g++v +  + + gHg++ ++a++   
    KIR62039.1 582 KL--LAGAsWMAEYGDP-DDPADWAYLRDYSPYHNVDrdrPYPPTLLVTSTRDDRVHPGHARKMAARLRERGHEVAYYENVEGGHGAAANNAQRaFV 675
                   **..57777********.8888899***********99*9******************************************************999 PP

                   HHHHHHHHHHHCT CS
  Peptidase_S9 198 larllaFlkealg 210
                    a +l+Fl ++lg
    KIR62039.1 676 WALTLEFLWRHLG 688
                   9*********997 PP

>> Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.0   4.4e-24   8.8e-21      19     232 ..       5     221 ..       2     226 .. 0.83
   2 ?   -1.2   0.0      0.33   6.6e+02     315     353 ..     316     354 ..     296     358 .. 0.73

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 4.4e-24
                     E-TTGGGGSTTSHHHHHHHHHHHHHHHHHHCTST.CHHHHHHHHHHHT-S-.EE---.EEETTEEEEEEE-SS-SS-EEEEEC.STS-TT.S-EE CS
  Peptidase_S9_N  19 sDpYrWLeDddspetkayleaenkyteevlaqlkelrekikeeitkliked.disap.frkgkyyyysrneggknqsvlyrqd.alskeg.eeee 109
                      DpYrWLeD d p++  + +  n+ t ++l       +++++ei + ++ d ++  p +r +  yy+++ +  +   ++ r++ +++++  +++ 
      KIR62039.1   5 DDPYRWLEDLDGPDAAGWARDRNAETMAALTGGD-RFAALRAEIREVLDADdRVPYPtWRGDHLYYNFWIDAAHPRGIWRRTTlDEYRRPePQWD 98 
                     5********************************9.77899999999887651677777777788889***************8744444458*** PP

                     EEE-GGGGST.TS-.EEEEEEE.E-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEE.EEECTTSSEEEEEESS-SSS-TSTSB- CS
  Peptidase_S9_N 110 vlLDpNtlse.dgtfvalgefa.vsedgkllAyslsksGsdwytirvkdietgedlpdeledvkfsg.ivWaadekgffYtrydkedersdtdtn 201
                     vlLD ++l++ +g+ +  ++   + + ++ +  sls++Gsd+  +r +d+    +++d ++  + ++ ++W++  +++  t+   + + + +++ 
      KIR62039.1  99 VLLDIDALAAqEGENWIWQGATvLRPGHDRCLVSLSRGGSDATVVREFDLVRRAFVADGFTLDEAKSdVTWVDADHILVATDFG-PGSLTTSGYP 192
                     ********9876665555555459**********************************9998888888*****96666666666.7777775555 PP

                     S-BEEEEEETTS-GGG-EEEES-TTGTTBEE CS
  Peptidase_S9_N 202 lnqkvyrhkLGtaqseDelvfeeeeepkwll 232
                        +v r + Gt+  ++e+vf ++ ++ +++
      KIR62039.1 193 --RTVRRWRRGTPLPSAEVVFAGQVDDVSAY 221
                     ..55555555************998887765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.33
                     GEEEEE--.SSCEEEEEEECTTEEEEEEEETTEEEEEEE CS
  Peptidase_S9_N 315 ewkelvperekvvleeitvfknylvvsyrkdvlsrvqvv 353
                     e ++l   +e+  l+    ++++l+++ + dv+sr++v 
      KIR62039.1 316 ELTTLFTPDERTALSYHGWTRGHLILATLADVRSRLEVL 354
                     455566666777778888999***************986 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.7   2.9e-07   0.00057      40     209 ..     512     665 ..     509     667 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.9e-07
                    TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHH CS
  Abhydrolase_3  40 APehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepkvagqvliyPvtdlertesesikkaeeladgplltra 135
                    A     P a+ed  a++  l+++     + p+r+ + G S GG la +++ r  +       ++v   P++d+ r  ++     ++   ++  + +
     KIR62039.1 512 ALRENRPRAYEDFAAVAADLVARG---ITTPARLGMEGGSNGGLLAGVMLTRYPEL----FGAVVAHVPLLDM-RRYHKLLA-GASWMAEYGDPDD 598
                    5666779***************95...478********************999995....89999****9988.33222221.1111222333344 PP

                    HHHHHHHHHSSGGGGG.STTTSGGGCS-SST---EEEEEETT-..TTHHHHHHHHHHHHHTT--EEEEEETTEETTG CS
  Abhydrolase_3 136 aldlfwrlylpeadrd.dplaspllaedlsglpptlvvvaefD..plrdegeayaerlraagvevelieyegmvHgf 209
                      d+   +yl    rd +p+ ++    + + +pptl+v+ ++D  +    ++++a+rlr+ g ev + e  +  Hg 
     KIR62039.1 599 PADW---AYL----RDySPYHNVD---RDRPYPPTLLVTSTRDdrVHPGHARKMAARLRERGHEVAYYENVEGGHGA 665
                    4443...344....2224444533...35779********9993344456788***************999999986 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1    0.0004      0.79      38     123 ..     497     584 ..     479     594 .. 0.73
   2 !    8.0   0.0   0.00076       1.5     193     229 ..     622     658 ..     612     663 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0004
  Hydrolase_4  38 DhrGhGrse...gkrghvpsfddyvdDlaafvekvkeehpel..plfllGhSmGGliallyllrypdkvaglilsaPalkikaklkappll 123
                  + rG G+ +    + +  ++  + ++D+aa+   ++++  ++  +l + G S GGl+a  +l+ryp+ + +++   P+l+++ + k   ll
   KIR62039.1 497 NIRGGGEYGpawHRAALRENRPRAYEDFAAVAADLVARGITTpaRLGMEGGSNGGLLAGVMLTRYPELFGAVVAHVPLLDMRRYHK---LL 584
                  56666666555333334455567899*****999999999996678889******************8889999999999997643...33 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00076
  Hydrolase_4 193 PllllhGeaDkvvdpeasrelyerlgskdktlklypg 229
                  P+ll+ +++D  v+p+ +r++++rl+ +  ++++y++
   KIR62039.1 622 PTLLVTSTRDDRVHPGHARKMAARLRERGHEVAYYEN 658
                  9**********************************97 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.2e-06    0.0024     117     238 ..     542     666 ..     499     681 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.2e-06
                 EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CC.......HCHHHC.....TTCCHHHCC-CCCCHCHHCHTTSEEEEEEEECTTBCCCHTSCHH CS
    Esterase 117 ravaGqSmGGlgALilalkhpdrFgsvssfSpivnps.......namWgq.....eekeawqendpvllakelsaslkalriyldvGtseddlgeqlsv 203
                     G S GGl A ++ +++p++Fg v ++ p+++ +        a W +      + + w+  ++++  ++  ++++   ++l+  t++d+++    +
  KIR62039.1 542 LGMEGGSNGGLLAGVMLTRYPELFGAVVAHVPLLDMRryhkllaGASWMAeygdpDDPADWAYLRDYSPYHNVDRDRPYPPTLLVTSTRDDRVHP---G 637
                 666799*************************************9677766677765566677777777776667788888899999999997763...2 PP

                 HHHHHHHHHCCHHHHCCCCCCT.T-SCCCC--SSHH CS
    Esterase 204 eilevlarnrelkeqlaargve.gedheydGghswe 238
                  +       r+++++l+ rg+e ++++ ++Ggh  +
  KIR62039.1 638 HA-------RKMAARLRERGHEvAYYENVEGGHGAA 666
                 22.......222223333333314666666666654 PP

>> Tannase  Tannase and feruloyl esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.1e-06      0.01      93     171 ..     520     598 ..     508     606 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.1e-06
     Tannase  93 alkkvtdvakaLvkafygkspersYfeGcSdGGRegltaaqRypddydGiiagapalnfvqla.lygafsaraeatddld 171
                 a++  + va +Lv++    +p r   eG+S+GG  + ++ +Ryp+ +  ++a++p l   + + l    s+ ae++d++d
  KIR62039.1 520 AYEDFAAVAADLVARGI-TTPARLGMEGGSNGGLLAGVMLTRYPELFGAVVAHVPLLDMRRYHkLLAGASWMAEYGDPDD 598
                 66667777777777655.46778889******************************999554437778889999988765 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.36   7.1e+02     111     164 ..     315     372 ..     305     390 .. 0.78
   2 !   12.5   0.2   3.8e-05     0.075      80     131 ..     523     574 ..     505     666 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.36
  Esterase_phd 111 adllalhypdvfaavalhs....GlalGeaadvisaldvmrrGlrqapaaavdalvea 164
                    +l +l  pd  +a++ h      l l + adv s l+v+  G+  ap++a   + e 
    KIR62039.1 315 RELTTLFTPDERTALSYHGwtrgHLILATLADVRSRLEVLTPGVPGAPGSAGHWRREP 372
                   5677788899999999885322135688899*****************9998776665 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.8e-05
  Esterase_phd  80 vvvalvdalvdehrvdaarvyvaGlsaGaaladllalhypdvfaavalhsGl 131
                     +a++  lv      +ar+ + G s G+ la ++   yp+ f av  h  l
    KIR62039.1 523 DFAAVAADLVARGITTPARLGMEGGSNGGLLAGVMLTRYPELFGAVVAHVPL 574
                   4577788888888899******************************999764 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     9e-06     0.018      27      77 ..     611     667 ..     580     679 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9e-06
  Abhydrolase_4  27 destakg.a.apvLllqnerDpaTPyegakklakalgg.avlvtvege...GHgala 77 
                      + +++   +p+Ll++++rD  + +  a+k+a +l++ ++ v + ++   GHga a
     KIR62039.1 611 YHNVDRDrPyPPTLLVTSTRDDRVHPGHARKMAARLRErGHEVAYYENvegGHGAAA 667
                    33333332349***************************9999876544345888865 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.035        70      21      54 ..     539     573 ..     526     591 .. 0.83
   2 ?    5.1   0.0    0.0095        19     118     161 ..     624     663 ..     614     669 .. 0.75
   3 ?   -0.9   0.1      0.66   1.3e+03     186     212 ..     661     688 ..     657     689 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.035
                 -SSEEEEEETHHHHHHHHHHHHSS.SEEEEEEES- CS
      BAAT_C  21 kdkigllGiSkGgelalllasflk.kisavvling 54 
                   + g+ G S Gg la ++ ++++    avv++++
  KIR62039.1 539 PARLGMEGGSNGGLLAGVMLTRYPeLFGAVVAHVP 573
                 5689********************55678888776 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0095
                 EEEEEETT-SSS-HHHHHHHHHHHHHCTT--.--EEEEETTB-S CS
      BAAT_C 118 illvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGH 161
                 +l+++  dD++ p   +a+k+++rL++ g++v   +    ++GH
  KIR62039.1 624 LLVTSTRDDRVHPG--HARKMAARLRERGHEV--AYYENVEGGH 663
                 45566667777774..8999**********93..3333347787 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.66
                 -B-HHHHHHHHHH.HHHHHHHHHHHH-X CS
      BAAT_C 186 GGetkahakAqed.sWkkilkFlkkhla 212
                 GG  +a  +Aq   +W+ +l+Fl +hl+
  KIR62039.1 661 GGHGAAANNAQRAfVWALTLEFLWRHLG 688
                 777788888887636***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4765.56
//
Query:       KIR62040.1  [L=84]
Description: hypothetical protein TK50_22515 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-05   23.7   0.0    4.5e-05   23.5   0.0    1.2  1  DivIVA          DivIVA protein
  ------ inclusion threshold ------
      0.055   12.8   1.1      0.069   12.5   1.1    1.1  1  Herpes_UL36     Herpesvirus UL36 tegument protein
       0.11   12.8   0.2       0.12   12.7   0.2    1.1  1  Mre11_DNA_bind  Mre11 DNA-binding presumed domain


Domain annotation for each model (and alignments):
>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   7.6e-09   4.5e-05       3      54 ..      11      65 ..       9      79 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 7.6e-09
                HHHHHH----EEE...EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT CS
      DivIVA  3 plDIknkeFkkkl...rGYdedeVdeFLdqvakdyeallkeneelkekvkeleek 54
                p ++++++F+++    rG+d++eV+eFL+ va ++ a ++  ++ +++ +e + +
  KIR62040.1 11 PWQVRERRFRSAPlgrRGFDPQEVREFLERVAVELAAAHEALAQSRREASEVKLA 65
                55678888988766658*****************999998888888877776655 PP

>> Herpes_UL36  Herpesvirus UL36 tegument protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.1   1.1e-05     0.069     181     214 ..      33      66 ..      29      74 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.1e-05
  Herpes_UL36 181 dvrrAlgrvalelaaAlEevaevrrdpeaAkeal 214
                  +vr+ l+rva+elaaA E +a++rr+    k al
   KIR62040.1  33 EVREFLERVAVELAAAHEALAQSRREASEVKLAL 66 
                  79999*******************9887777766 PP

>> Mre11_DNA_bind  Mre11 DNA-binding presumed domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2     2e-05      0.12      34      77 ..      31      74 ..      14      80 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2e-05
                    CCCHHHHHHHHHHHHHHHHHHHHSSSTTS------EEEEEEE-T CS
  Mre11_DNA_bind 34 kekvtkflrekVeelieeaeeeweeeaeeeepplPLiRLrVdys 77
                     ++v++fl+++  el +  e+  ++++e++e +l L RLr +  
      KIR62040.1 31 PQEVREFLERVAVELAAAHEALAQSRREASEVKLALCRLRSEAA 74
                    5789999999988888888888899***************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 557.49
//
Query:       KIR62041.1  [L=191]
Description: redoxin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.6e-11   41.8   0.0    1.1e-10   41.5   0.0    1.1  1  AhpC-TSA       AhpC/TSA family
    9.6e-10   38.4   0.0    1.3e-09   37.9   0.0    1.2  1  Redoxin        Redoxin
    3.3e-06   27.3   0.0    4.4e-06   26.9   0.0    1.1  1  Thioredoxin_8  Thioredoxin-like
      5e-05   23.2   0.0      8e-05   22.6   0.0    1.3  1  Thioredoxin    Thioredoxin
       0.01   16.3   0.0      0.015   15.7   0.0    1.4  1  Thioredoxin_2  Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0     3e-14   1.1e-10       7     123 ..      63     173 ..      56     174 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 3e-14
                 --EEESTTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEES.SSCHHHHHHHHH-H.SSEEEE-.TTSHHHHHTT-EET CS
    AhpC-TSA   7 dfelknadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsv.dspeshkkfiekeslnfpllsD.eegkvakaygvlke 103
                  f++++ dg+++  +d++g+pvvl f++  wc  C  ++   a+ +++++++ v ++gv    + +++++f+ + +l  +l +D   gk+ ++++v+  
  KIR62041.1  63 RFTGTTLDGKPFAAADLAGRPVVLWFWAP-WCATCASQAWTVAEIAPQYRDL-VPIVGVAGlGQRKAMRDFVTEFELGGTLQLDdAAGKLWRRFEVV-- 157
                 499**************************.********************76.99****9989999**********99999776699**********.. PP

                 TTTECSCEEEEE-TTSBEEE CS
    AhpC-TSA 104 ekglalratfvidkegkiry 123
                      + +  +id++gk+ +
  KIR62041.1 158 ----EQSTFLIIDRDGKVIH 173
                 ....788999*******986 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   3.7e-13   1.3e-09      10     131 ..      63     175 ..      37     188 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 3.7e-13
                 ECCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEE.EESSSHHHHHHHHHTT-TSEEEE-.TTSHHHHHTT-TTE CS
     Redoxin  10 tlplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvav.vadndafvkefwgkeglkfpvlsD.gsaaftkalGlrle 106
                 ++++++ dg+++  ++++g++vv+ f++  +c tC  ++  ++++a+++++  v +v+v    ++  +++f+++ +l  ++ +D + +++ + + +   
  KIR62041.1  63 RFTGTTLDGKPFAAADLAGRPVVLWFWAP-WCATCASQAWTVAEIAPQYRDL-VPIVGVaGLGQRKAMRDFVTEFELGGTLQLDdAAGKLWRRFEVV-- 157
                 366788***********************.******************9999.99999945666666*******888888855549*********77.. PP

                 EE.GGGEEE-EEEEEEETTEEEEEE CS
     Redoxin 107 edaseglrtpryavidedgkvvyle 131
                           ++ +id+dgkv++ +
  KIR62041.1 158 -------EQSTFLIIDRDGKVIHQG 175
                 .......5689***********975 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.2e-09   4.4e-06       1      95 []      81     171 ..      81     171 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.2e-09
                    .SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS-TTSEE.EE-TT-HHHHTT-S--TT-SEEEEE-TT-BE CS
  Thioredoxin_8   1 gkvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkknkkpwlsvpfddkkrnklkkkynvkaiPtlvvldkngev 95 
                    g+ v+L f+a wc+ c+    ++ e+  +++  + v iv v    +++++++++++ +     ++ d +   kl+++++v +  t++++d++g+v
     KIR62041.1  81 GRPVVLWFWAPWCATCASQAWTVAEIAPQYR--DLVPIVGVAGLGQRKAMRDFVTEFELG-GTLQLD-DAAGKLWRRFEVVEQSTFLIIDRDGKV 171
                    689***************************9..************************222.222444.4489*********************98 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.2e-08     8e-05      18      56 ..      81     119 ..      68     134 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.2e-08
                  SSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEE CS
  Thioredoxin  18 kklvlveFyApwCghCkalaPeleklaeelkdkvklakv 56 
                   ++v++ F+ApwC+ C + a +++++a +++d v ++ v
   KIR62041.1  81 GRPVVLWFWAPWCATCASQAWTVAEIAPQYRDLVPIVGV 119
                  5799***************************98887765 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.3e-06     0.015       4      57 ..      80     135 ..      77     186 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.3e-06
  Thioredoxin_2   4 ngkpvlvvftdpdCpyCkklkkelkel.ddvtvrvllfp...lkpsfepkavaiwcak 57 
                     g+pv+++f++p+C  C+    ++ e+ +++++ v ++    l++   ++++++ ++ 
     KIR62041.1  80 AGRPVVLWFWAPWCATCASQAWTVAEIaPQYRDLVPIVGvagLGQR--KAMRDFVTEF 135
                    699***************9777777776666666333334344443..4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1351.98
//
Query:       KIR62042.1  [L=355]
Description: MerR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-13   50.0   0.0    4.6e-13   49.1   0.0    1.4  1  MerR_1           MerR HTH family regulatory protein
      1e-12   48.2   0.0    1.9e-12   47.4   0.0    1.5  1  DNA_pol3_beta_2  DNA polymerase III beta subunit, central dom
    1.7e-12   46.9   0.1    3.6e-12   45.8   0.1    1.6  1  MerR             MerR family regulatory protein
    7.9e-08   32.5   0.0    1.4e-07   31.7   0.0    1.4  1  DNA_pol3_beta    DNA polymerase III beta subunit, N-terminal 
    0.00065   19.5   0.0     0.0014   18.5   0.0    1.5  1  DNA_pol3_beta_3  DNA polymerase III beta subunit, C-terminal 
     0.0054   17.2   1.6      0.013   16.0   1.6    1.7  1  MerR-DNA-bind    MerR, DNA binding
  ------ inclusion threshold ------
        0.2   11.6   1.5        0.4   10.6   1.5    1.5  1  T2SSF            Type II secretion system (T2SS), protein F


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   1.8e-16   4.6e-13       2      65 ..       3      68 ..       2      71 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 1.8e-16
                EHHHHHHHHTS-HHHHHHHHHHTT-S-EE..-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---X CS
      MerR_1  2 sigevakilgvtthtlrywekegllkpkr..teggrryYtdedierLklikyLlkrGltlkgikkl 65
                sige+a+++g+t++ lr++++ g+l+p+     +g+r Y d+++   +l+ +L+  G++l++i+ +
  KIR62042.1  3 SIGELARASGLTVSALRFYDRSGVLVPALvdPVTGYRWYADDQVLPARLVAALRRVGMPLAEIAAA 68
                8***********************999999*********************************876 PP

>> DNA_pol3_beta_2  DNA polymerase III beta subunit, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   7.4e-16   1.9e-12       3     116 .]     121     234 ..     119     234 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 7.4e-16
                      EHHHHHHHHHCCGGGS-SSTTSGGGGEEEEEEECCEEEEEEE-SSEEEEEEEEEEECTTCEEEEEEEHHHHHHHHHHHTS.SSSEEEEEEESSE CS
  DNA_pol3_beta_2   3 kqkelkelieqvafaasedetrpvLtGvrleieedklllaaTdghRlavrkleleeeeedeasvivPaktlaelaklled.neeqvklalsegk 95 
                      +   l+ +i++v+fa+++d  +pvL Gv + +  d ++l+aTd+hR+av++++ ++  + +  ++ P+  +  ++ l     + + +l l+ + 
       KIR62042.1 121 SRADLAAAIDAVRFAVGTDPELPVLSGVLFDVAADGVRLVATDRHRMAVARVPGAVDGP-TRRLLAPVDLIDAVRELSGVdGGADAHLRLDGDG 213
                      677899*********************************************99999888.4888888877666666543225667778887777 PP

                      EEEEETTEEEEEE-BSS---B CS
  DNA_pol3_beta_2  96 irfevgnvrltsrlldgkfPd 116
                      ++++v+++ +    l  +fPd
       KIR62042.1 214 LTVTVAGREVGGAALPDEFPD 234
                      777777777777777777776 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.1   1.4e-15   3.6e-12       1      38 []       3      41 ..       3      41 .. 0.99

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 1.4e-15
                EHHHHHHHHTTTHHHHHHHHHTT.SSTSEEETTTSSEEE CS
        MerR  1 tIgevAeltGvsprtLRyYEreG.LipppeRtegGyRlY 38
                +Ige+A+++G+++++LR+Y+r G L+p+ +++ +GyR+Y
  KIR62042.1  3 SIGELARASGLTVSALRFYDRSGvLVPALVDPVTGYRWY 41
                7*************************************9 PP

>> DNA_pol3_beta  DNA polymerase III beta subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   5.4e-11   1.4e-07       2     104 ..     117     221 ..     116     235 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 5.4e-11
                    EEEEEHHHHHHHHHHHHTTSSSTTSSGGGGEEEEEEETTEEEEEEE-SSEEEEEEEESEEEEE-EEEEEEHHHHHHHHHHSST...TSEEEEEEET CS
  DNA_pol3_beta   2 kftiereellkelekvakvisnRntlpiLsgvllevkdsqlsltgtDleisiestisaeseeeegkvlvparllldivkaLpn...dkkvkisvne 94 
                    +++++r++l+ +++ v  ++ + + lp+Lsgvl +v+++++ l +tD+   + ++++  ++  +   l+ +  l+d+v++L+    +++ ++ +++
     KIR62042.1 117 RLVLSRADLAAAIDAVRFAVGTDPELPVLSGVLFDVAADGVRLVATDRHRMAVARVPGAVD-GPTRRLLAPVDLIDAVRELSGvdgGADAHLRLDG 211
                    68899********************************************************.99999*************9642227889999999 PP

                    TEEEEEEETT CS
  DNA_pol3_beta  95 qklliiksgs 104
                    + l+++ +g+
     KIR62042.1 212 DGLTVTVAGR 221
                    9888887766 PP

>> DNA_pol3_beta_3  DNA polymerase III beta subunit, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.4e-07    0.0014      71     121 .]     304     354 ..     293     354 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 5.4e-07
                      EEEEEEHHHHHHHHHHH-SSEEEEEESSTTS-EEEEETTEESEEEEE--BB CS
  DNA_pol3_beta_3  71 leiafNvsYlldalkaleteevelqltdstkpvllsevedesvkyvilpmr 121
                      + ++ N +Ylldal a +  +  l+l ++  p+ ++ + d ++  +++p+r
       KIR62042.1 304 VRLGVNGRYLLDALDAGDRGQLLLELDGPIAPLAVRRPDDADAYSILMPIR 354
                      6789*********************************************96 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.6   5.2e-06     0.013       6      52 ..      51      93 ..      50     109 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.2e-06
                   HHHHHHHTT--HHHHHHHHHHHHSTTTBHHHHH.HHHHHHHHHHHHHH CS
  MerR-DNA-bind  6 fIrrarrlGFsLdeIrelLalyddrappcqdvr.allarklaeleeri 52
                   ++  +rr+G++L+eI++       r+++ ++v  +ll+++l +le  +
     KIR62042.1 51 LVAALRRVGMPLAEIAAAV-----RHRAEPAVVgRLLDAHLRRLEDGL 93
                   67899**************.....445555555588888888887533 PP

>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.5   0.00016       0.4       3      67 ..      50     115 ..      49     132 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
                 HHHHHHHHTT--HHHHHHHHHHHHSSHHHHHHHHHHHHHHHTTSSHH.HHHCT-TT.TS.-HHHHHH CS
       T2SSF   3 rqlatllsaGvplveaLellaeeaengplaeelkriarrlraGgsls.ealertpssef.pelvvql 67 
                 r++a l + G+pl+e+  ++ + ae+ ++++ l++ +rrl+ G + + + l+r     + +e +++ 
  KIR62042.1  50 RLVAALRRVGMPLAEIAAAVRHRAEPAVVGRLLDAHLRRLEDGLTDArRELSRVRA-LIdHEEYQMS 115
                 88999**************************************9654266665443.5544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2632.90
//
Query:       KIR62043.1  [L=391]
Description: alcohol dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-23   81.1   1.4    1.2e-22   79.8   1.4    1.7  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    3.7e-15   56.1   0.3    3.2e-09   36.9   0.1    2.3  2  ADH_zinc_N       Zinc-binding dehydrogenase
     0.0008   19.3   0.0     0.0017   18.2   0.0    1.6  1  ADH_N_assoc      Alcohol dehydrogenase GroES-associated
     0.0029   16.9   0.5     0.0051   16.1   0.5    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.054   12.9   0.0      0.088   12.2   0.0    1.2  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
       0.07   13.0   0.2       0.11   12.4   0.2    1.2  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.096   13.0   0.0       0.19   12.0   0.0    1.5  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.13   12.3   0.0        0.2   11.7   0.0    1.2  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
       0.14   12.4   0.0       0.24   11.7   0.0    1.3  1  TrkA_N           TrkA-N domain
       0.19   10.4   0.3       0.25   10.0   0.3    1.1  1  HI0933_like      HI0933-like protein
        1.5    8.9   5.9        6.4    6.9   4.3    2.3  2  NADH_4Fe-4S      NADH-ubiquinone oxidoreductase-F iron-sulfur


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   1.4   7.4e-26   1.2e-22       3     104 ..      27     148 ..      25     153 .. 0.90

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 7.4e-26
                 EEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-................TTBE CS
       ADH_N   3 evlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlC................eeak 85 
                 +++++v+ ++ Cg Dl +l g + +  + + +lGHE+ G v+evgp+v++ +vGdrVvv ++++cg+C +C++g + +C                ++++
  KIR62043.1  27 DAIVRVRRSATCGADLPLLAG-RAPALSVGDVLGHEFLGDVVEVGPGVRRHRVGDRVVVCAAVACGNCWYCRQGLYACCdngstgpaaaeaawgqPTGG 124
                 789******************.8********************************************************99999999888888875555 PP

                 ETTTS.....S-SSSBSEEEECGG CS
       ADH_N  86 llgvs.....ldGgfaeyvvvpek 104
                  +g       + G++aeyv vp +
  KIR62043.1 125 CYGHPrsaggFAGSHAEYVRVPYA 148
                 55555777788999*****99965 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.1     2e-12   3.2e-09       1      67 [.     196     263 ..     196     269 .. 0.92
   2 !   17.2   0.0   2.4e-06    0.0039      70     116 ..     292     339 ..     287     352 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 2e-12
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHH.TTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSC CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakk.lGadevinykeadlverikeltggegvdvvfecvG 67 
                 +vG++a q+A   Ga +v+++d+ +++l la++  Ga e+++y + d+ ++++e  gg+g+dv +e+vG
  KIR62043.1 196 AVGQMAAQAALLRGAdRVVVIDRYPQRLGLAQRhVGA-ETLDYLSVDVPAELRERSGGRGPDVCVEAVG 263
                 69*******************************7885.67888455**********************9 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 2.4e-06
                 HHHHHHHHCEEEEEEEEECSCTSSEEE.EEHHHHHHTT-EEEEE-SSC CS
  ADH_zinc_N  70 atleaalkllkpgGrlvvvGggkgeee.fdlrnlllkeksilGsllgs 116
                  ++++a+ ++++gG++vv G+++g  + f+l+ ++ k ++++     +
  KIR62043.1 292 IAVREAVHACRKGGTVVVLGTFTGFVDtFPLGAVMQKGLTVRAARQHG 339
                 6799*****************5555555*************8766555 PP

>> ADH_N_assoc  Alcohol dehydrogenase GroES-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.1e-06    0.0017       1      22 [.       1      22 [.       1      23 [. 0.96

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.1e-06
  ADH_N_assoc  1 MKAVTyqGpkdVrVeeVPDPkI 22
                 M+A+++ G    +V +VPDP++
   KIR62043.1  1 MRALCWLGADGLAVRQVPDPEL 22
                 ********************96 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.5   3.1e-06    0.0051      19      77 ..     176     237 ..     166     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.1e-06
                  TTCEETCB---EEE.EESTSHHHHHHHHHHHHTT-E.EEEEESSHHHHHHHHH.TTTCECEE CS
  AlaDh_PNT_C  19 laGgvpgvepakvl.viGgGvaGlqAiatakglgak.VtvlDvrparleqles.lgakfvev 77 
                  la+ + +v+p+ v+ v G+G +G+ A+++a   ga+ V+v+D  p+rl   +  +ga++++ 
   KIR62043.1 176 LAAELGEVSPGDVVaVWGAGAVGQMAAQAALLRGADrVVVIDRYPQRLGLAQRhVGAETLDY 237
                  55566667799876489**************9999559********9988887788876665 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.4e-05     0.088      32      86 ..     182     236 ..     165     242 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.4e-05
                   S-GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHHHTCEECSHH CS
  2-Hacid_dh_C  32 kelsgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeeelgvelvsle 86 
                   +   g  v+++G+G++Gq +a+ +   g+ +v+++dr++++    ++ +v  ++l+
    KIR62043.1 182 EVSPGDVVAVWGAGAVGQMAAQAALLRGAdRVVVIDRYPQRLG-LAQRHVGAETLD 236
                   5556889******************999989*******99655.555555555555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   6.6e-05      0.11       2      44 ..     189     232 ..     188     241 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.6e-05
                 EEEE--SCCHHHHHHHHHHTT-E.EEEE-S-HHHHHHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagle.Vvlvdiseealekalekiek 44 
                 vav GaG +G+  a++++ +g + Vv++d+ +++l  a++++ +
  KIR62043.1 189 VAVWGAGAVGQMAAQAALLRGADrVVVIDRYPQRLGLAQRHVGA 232
                 9*******************9854*********99999888765 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00012      0.19       2      56 ..     190     242 ..     189     267 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
                      EEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--T CS
  Sacchrp_dh_NADP   2 liiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialda 56 
                       + GaG+vGq +a+  + ++    +++v+dr+ ++l  +  ++  ++++  ++d+
       KIR62043.1 190 AVWGAGAVGQMAAQAALLRGAD--RVVVIDRYPQRLGLAQRHVGAETLDYLSVDV 242
                      678************9999998..*********9976666555555555555554 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00012       0.2      14      60 ..     188     234 ..     176     248 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
                   EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET CS
  Shikimate_DH  14 kvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgee 60 
                    v + GaG +++ +a++ l +g+++vvv+ R  +r     +++++e 
    KIR62043.1 188 VVAVWGAGAVGQMAAQAALLRGADRVVVIDRYPQRLGLAQRHVGAET 234
                   57899**************************9999754444444444 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015      0.24       1      40 [.     189     229 ..     189     242 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHT CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelree 40 
                 +++ G+G vG+  a+     g ++vvvid+ ++r+  ++++
  KIR62043.1 189 VAVWGAGAVGQMAAQAALLrGADRVVVIDRYPQRLGLAQRH 229
                 6899**********9877746678*********99887766 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00015      0.25       3      33 ..     189     220 ..     187     224 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00015
                  EEEE--SHHHHHHHHHH.HHTT--EEEE-SSS CS
  HI0933_like   3 viviGgGaAGlmaAisa.akrgkrVlllekak 33 
                  v+v G+Ga G maA +a  +   rV+++++ +
   KIR62043.1 189 VAVWGAGAVGQMAAQAAlLRGADRVVVIDRYP 220
                  7899************94455579****9865 PP

>> NADH_4Fe-4S  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.3    0.0039       6.4       9      28 ..      84     103 ..      80     106 .. 0.86
   2 ?    0.4   0.0      0.43   7.1e+02      23      46 ..     338     361 ..     337     371 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0039
                  HHHHH--S--HHHHIIIIHH CS
  NADH_4Fe-4S   9 fyaaesCGkCtpCreGtkrl 28 
                  ++aa  CG C  Cr G+  +
   KIR62043.1  84 VCAAVACGNCWYCRQGLYAC 103
                  69999***********9765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.43
                  IIIIHHHHHHHHHTBT---HHHHH CS
  NADH_4Fe-4S  23 eGtkrllelleriaagegteedld 46 
                   G +++  ll+r+a+ge ++ +l 
   KIR62043.1 338 HGQRWIPMLLDRMARGEIHTGHLA 361
                  5999************98876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2848.76
//
Query:       KIR62044.1  [L=611]
Description: hypothetical protein TK50_22580 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.047   13.5   0.2       0.18   11.7   0.2    2.0  1  PetG      Cytochrome B6-F complex subunit 5
      0.053   13.6   3.9          2    8.6   0.6    3.2  2  DUF1435   Protein of unknown function (DUF1435)


Domain annotation for each model (and alignments):
>> PetG  Cytochrome B6-F complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2     2e-05      0.18       5      27 ..     347     367 ..     346     371 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2e-05
        PetG   5 LLlGiVLGLvpVTlaGLFvaAYl 27 
                 LL G+VL  +    aGLFv A++
  KIR62044.1 347 LLPGMVL--IGLAAAGLFVSAWR 367
                 7888885..88899********7 PP

>> DUF1435  Protein of unknown function (DUF1435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2    0.0045        41       2      49 ..     148     196 ..     147     205 .. 0.82
   2 ?    8.6   0.6   0.00022         2      12      44 ..     346     382 ..     341     387 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0045
     DUF1435   2 lqkrlesgW.gvlLPavliallalaelsldqlrviivlallltvvmLyh 49 
                 l+++l++gW g  + ++  a   ++   + +l+v+ v ++ l+++mL  
  KIR62044.1 148 LSRQLGAGWaGAAVAGASFAYAPWKLAQAGHLHVLSVGGIALALAMLAR 196
                 789******657788888888888888999****************954 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00022
     DUF1435  12 vlLPavliallalaelsldqlrv....iivlallltv 44 
                  lLP++++ +la a+l ++++rv     +++++l+tv
  KIR62044.1 346 TLLPGMVLIGLAAAGLFVSAWRVrhrvALAVGVLVTV 382
                 59*******************8722215566666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4237.23
//
Query:       KIR62045.1  [L=927]
Description: xyloglucanase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-27   94.5  12.8    1.6e-26   92.6  12.8    2.1  1  CBM_2           Cellulose binding domain
    7.4e-14   51.4   6.8     0.0023   16.8   0.1    6.5  6  Sortilin-Vps10  Sortilin, neurotensin receptor 3,
    3.2e-08   32.4  38.4       0.37   11.0   1.5    9.7  9  BNR             BNR/Asp-box repeat
    1.5e-06   27.7   3.2       0.11   12.6   0.0    6.8  6  BNR_6           BNR-Asp box repeat
     0.0008   19.6   2.3     0.0016   18.6   0.1    2.8  3  Kelch_6         Kelch motif
  ------ inclusion threshold ------
      0.029   14.0   0.0       0.84    9.4   0.0    3.3  3  End_N_terminal  N terminal extension of bacteriophage endosia
      0.036   14.3   5.4      0.056   13.7   0.4    3.9  4  Kelch_3         Galactose oxidase, central domain
       0.25   10.6  11.9        1.5    8.0   2.7    4.9  4  BNR_2           BNR repeat-like domain


Domain annotation for each model (and alignments):
>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6  12.8     7e-30   1.6e-26       1      95 [.     829     923 ..     829     927 .] 0.96

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 7e-30
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--E CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsft 95 
                 ++aty+vt +W++Gf+++vtvkN++ sa ++W+v w++p gq++tqlW +t++q+G +v++++++wNgt++ Ggs++fGf +s+tg ns+p+  t
  KIR62045.1 829 CSATYKVTTSWSGGFQGEVTVKNNSGSAKSSWSVVWNFPGGQQITQLWGGTYTQTGAQVVVRDAGWNGTLPVGGSTTFGFVASGTGANSTPAILT 923
                 899*************************************************************************************9998765 PP

>> Sortilin-Vps10  Sortilin, neurotensin receptor 3,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.1e-06    0.0025      44     112 ..     137     205 ..      80     208 .. 0.55
   2 !   16.8   0.1     1e-06    0.0023       3      61 ..     140     206 ..     138     252 .. 0.76
   3 !   10.4   0.1   8.8e-05       0.2       2     117 ..     260     385 ..     259     398 .. 0.84
   4 !    4.3   0.0    0.0064        14     356     391 ..     523     557 ..     511     561 .. 0.84
   5 !   10.7   0.0   7.2e-05      0.16       2     110 ..     589     685 ..     588     689 .. 0.76
   6 !    6.1   0.1    0.0018         4       3      62 ..     674     737 ..     672     753 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.1e-06
                     S-EEEEESSTTSSEEEEE-SS-BS.........S--EEESSETTEEEEE.......BTTS-EEEESSTTSSEEEE CS
  Sortilin-Vps10  44 skklyvttDrGktwkkfklpfkpsl......saeplsfhakdkdwlialgekkeskdckkkayystdggkswkkl 112
                     ++ +++++D+G+tw+ ++lpfk          +e+l+++++++++ i++g      +  + ++ std g++w k+
      KIR62045.1 137 KGAILRSSDKGATWQVTELPFKNGGnmpgrgMGERLAVDPNKNST-IYYG-----AEGGNGLWRSTDYGATWAKV 205
                     555555555555555555555554333444444555555544333.3332.....34455555555555555554 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1e-06
                     EEEESSTTSS-EE-GGGGTTEEBE.......-EEE-STTS--EEEEEE.S-EEEEESSTTSSEEEEE CS
  Sortilin-Vps10   3 vyiSeDeGktwkkvkeklkgeaiq.......eivvhpfdkkkaylltd.skklyvttDrGktwkkfk 61 
                     + +S+D+G+tw+  +  +k+   +       ++ v+p +++++y   + ++ l+++tD G+tw k+ 
      KIR62045.1 140 ILRSSDKGATWQVTELPFKNGGNMpgrgmgeRLAVDPNKNSTIYYGAEgGNGLWRSTDYGATWAKVA 206
                     7899999999998887666665557788899999999999999998888899999999999999863 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 8.8e-05
                     EEEEESSTTSS-EE-GGGGTTEEBE-EEE-STTS--EEEEEE........S-EEEEESSTTSSEEEE.E-SS-BS......S--EEESSETTEEE CS
  Sortilin-Vps10   2 evyiSeDeGktwkkvkeklkgeaiqeivvhpfdkkkaylltd........skklyvttDrGktwkkf.klpfkpsl...saeplsfhakdkdwli 84 
                      vy+S++ G+tw+++  +++g   ++ vv+p     +++++d        ++ ++  + +   w+++  +p++ s    + + l+++ +++++l+
      KIR62045.1 260 PVYRSTNGGTTWERIPGQPTGYLAHKGVVDPVGGYLYIATSDtggpydgaKGDVWKFNRATGAWTQIsPIPSSSSDayfGYSGLTIDRQKPNTLM 354
                     59***************999999999999999977777777799999998999999888888999962577777778889999**********99 PP

                     EE.......BTTS-EEEESSTTSSEEEEESSEE CS
  Sortilin-Vps10  85 algekkeskdckkkayystdggkswkklqesvk 117
                     + +  + s   ++  + stdgg++w+ + e ++
      KIR62045.1 355 VAT--QISWWPDAIFWRSTDGGATWSRIWEFTS 385
                     995..5666678889**********99987765 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.0064
                     TSTT-EEEEEEEESSHHSS.S-EEEEESSSSSS-EE CS
  Sortilin-Vps10 356 sApGlimgvGnvGkslksyeeadtfiSrDaGltWke 391
                     + p +++  Gn  +   ++ ++++ +S+D+G++W +
      KIR62045.1 523 TNPAVMVRAGNFTDADRPN-DSHVAFSTDGGANWFQ 557
                     568999999***9999996.999999*******965 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 7.2e-05
                     EEEEESSTTSS-EE-GGGGTTEEBE-EEE-STTS--EEEEEES-EEEEESSTTSSEEEEE-SS-BS...S--EEESSETTEEEEE.......BTT CS
  Sortilin-Vps10   2 evyiSeDeGktwkkvkeklkgeaiqeivvhpfdkkkaylltdskklyvttDrGktwkkfklpfkpslsaeplsfhakdkdwlialgekkeskdck 96 
                     +v++S   G++w+  +  + + ++     ++ +k+k+y ++ ++k+yv+t+ G++++   +   ps+++ +++  + ++   i+l         +
      KIR62045.1 589 QVVRSVGFGNSWTAATGIPANAVV---ESDRVNKNKFYGFS-GGKFYVSTNGGASFTASAATGLPSTGNVKFKALPGKEGE-IWL-------AGE 671
                     78999999*******987777665...47888888888776.89**************99999999655555555555554.455.......457 PP

                     S-EEEESSTTSSEE CS
  Sortilin-Vps10  97 kkayystdggkswk 110
                       ++ std+g+++ 
      KIR62045.1 672 GGLWRSTDSGTTFA 685
                     77888888877765 PP

  == domain 6  score: 6.1 bits;  conditional E-value: 0.0018
                     EEEESSTTSS-EE-GGGGTTEEBE..-EEE-STTS--EEEEEE..S-EEEEESSTTSSEEEEE- CS
  Sortilin-Vps10   3 vyiSeDeGktwkkvkeklkgeaiq..eivvhpfdkkkaylltd..skklyvttDrGktwkkfkl 62 
                     +++S+D+G+t+ k   + +   +   ++ + +++   +++ t   +  l+++++ G+ w +++ 
      KIR62045.1 674 LWRSTDSGTTFAKQAGVSSAVNVGfgKAAPGQTYPALFVFGTVdgQAGLFRSDNTGAAWVRIND 737
                     7999999999999998777766667788888888777777666778889999999999987765 PP

>> BNR  BNR/Asp-box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.019        42       2      11 ..     142     151 ..     141     152 .. 0.90
   2 !    8.3   0.5    0.0012       2.8       1      11 [.     193     203 ..     193     204 .. 0.89
   3 ?    3.6   0.1     0.045     1e+02       3      10 ..     226     233 ..     224     235 .. 0.91
   4 !   10.4   0.5   0.00025      0.57       1      12 []     262     273 ..     262     273 .. 0.91
   5 !   11.0   1.5   0.00017      0.37       1      12 []     368     379 ..     368     379 .. 0.91
   6 !    7.8   0.2    0.0019       4.2       2      10 ..     547     555 ..     546     557 .. 0.90
   7 ?   -2.5   0.1       4.7   1.1e+04       3      11 ..     593     601 ..     592     602 .. 0.80
   8 !    5.8   0.0    0.0086        19       1      11 [.     631     641 ..     631     642 .. 0.91
   9 ?    2.9   0.4     0.077   1.7e+02       1      11 [.     675     685 ..     675     686 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.019
                 EESSTTSS-E CS
         BNR   2 yStDgGktWs 11 
                  S D G tW+
  KIR62045.1 142 RSSDKGATWQ 151
                 699******8 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0012
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 + StD G tW 
  KIR62045.1 193 WRSTDYGATWA 203
                 78********7 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.045
                 ESSTTSS- CS
         BNR   3 StDgGktW 10 
                 S+++G tW
  KIR62045.1 226 SQNQGLTW 233
                 99****** PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00025
                 EEESSTTSS-EE CS
         BNR   1 yyStDgGktWsk 12 
                 y St+gG tW++
  KIR62045.1 262 YRSTNGGTTWER 273
                 89********85 PP

  == domain 5  score: 11.0 bits;  conditional E-value: 0.00017
                 EEESSTTSS-EE CS
         BNR   1 yyStDgGktWsk 12 
                 + StDgG tWs+
  KIR62045.1 368 WRSTDGGATWSR 379
                 78********96 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.0019
                 EESSTTSS- CS
         BNR   2 yStDgGktW 10 
                 +StDgG +W
  KIR62045.1 547 FSTDGGANW 555
                 7******** PP

  == domain 7  score: -2.5 bits;  conditional E-value: 4.7
                 ESSTTSS-E CS
         BNR   3 StDgGktWs 11 
                 S  +G +W+
  KIR62045.1 593 SVGFGNSWT 601
                 778999**8 PP

  == domain 8  score: 5.8 bits;  conditional E-value: 0.0086
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 y+St+gG +++
  KIR62045.1 631 YVSTNGGASFT 641
                 89*******97 PP

  == domain 9  score: 2.9 bits;  conditional E-value: 0.077
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 + StD G t+ 
  KIR62045.1 675 WRSTDSGTTFA 685
                 78*******96 PP

>> BNR_6  BNR-Asp box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.34   7.7e+02       3      11 ..     142     150 ..     140     153 .. 0.86
   2 !   12.6   0.0   4.8e-05      0.11       1      12 [.     192     204 ..     192     205 .. 0.87
   3 ?   -1.6   0.0       1.8     4e+03       2      13 ..     262     273 ..     261     274 .. 0.85
   4 ?    0.7   0.3      0.33   7.4e+02       2      11 ..     368     377 ..     367     380 .. 0.89
   5 ?    3.5   0.0     0.044        98       1      13 [.     674     687 ..     674     688 .. 0.91
   6 ?    2.7   0.0     0.075   1.7e+02       1      12 [.     722     733 ..     722     735 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.34
       BNR_6   3 rSeDfGknf 11 
                 rS+D G+++
  KIR62045.1 142 RSSDKGATW 150
                 9*******9 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.8e-05
       BNR_6   1 LyrSeDfGknf.k 12 
                 L+rS D+G+++ k
  KIR62045.1 192 LWRSTDYGATWaK 204
                 8**********44 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.8
       BNR_6   2 yrSeDfGknfkq 13 
                 yrS + G +++ 
  KIR62045.1 262 YRSTNGGTTWER 273
                 999999999986 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.33
       BNR_6   2 yrSeDfGknf 11 
                 +rS D G+++
  KIR62045.1 368 WRSTDGGATW 377
                 *******999 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.044
       BNR_6   1 LyrSeDfGknf.kq 13 
                 L+rS D G +f kq
  KIR62045.1 674 LWRSTDSGTTFaKQ 687
                 8*******999887 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 0.075
       BNR_6   1 LyrSeDfGknfk 12 
                 L+rS++ G+ ++
  KIR62045.1 722 LFRSDNTGAAWV 733
                 8*****999997 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.5   7.8e+03      12      34 ..     120     144 ..     110     159 .. 0.62
   2 ?   -4.0   0.1         8   1.8e+04      39      48 ..     270     279 ..     270     280 .. 0.84
   3 !   18.6   0.1   7.3e-07    0.0016      10      47 ..     291     330 ..     282     333 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.5
     Kelch_6  12 gkiYif.GGytds.spylnkvwvyd 34 
                 +++Y++ G yt++ +p    +++ +
  KIR62045.1 120 NRVYAAvGMYTNDwDPNKGAILRSS 144
                 6777775666666544444555555 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 8
     Kelch_6  39 sWeqlpplpv 48 
                 +We++p  p+
  KIR62045.1 270 TWERIPGQPT 279
                 7*****9886 PP

  == domain 3  score: 18.6 bits;  conditional E-value: 7.3e-07
     Kelch_6  10 vggkiYifGGytds..spylnkvwvydpetksWeqlpplp 47 
                 vgg++Yi+   t++  + +  +vw+++  t+ W+q++p+p
  KIR62045.1 291 VGGYLYIATSDTGGpyDGAKGDVWKFNRATGAWTQISPIP 330
                 89*********9999***********************99 PP

>> End_N_terminal  N terminal extension of bacteriophage endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.4     9e+02      29      39 ..     146     156 ..     139     172 .. 0.90
   2 ?    9.4   0.0   0.00037      0.84      43      64 ..     263     284 ..     257     287 .. 0.83
   3 ?   -3.3   0.0       3.3   7.4e+03      47      63 ..     709     725 ..     707     727 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.4
                     TT-EEEESS-- CS
  End_N_terminal  29 rGltykvssLP 39 
                     +G+t++v++LP
      KIR62045.1 146 KGATWQVTELP 156
                     79********9 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00037
                     GEES-EEEE-SSTT--EEEE-B CS
  End_N_terminal  43 rfknarfvyeRiaGqPLyYvse 64 
                     r  n    +eRi+GqP  Y ++
      KIR62045.1 263 RSTNGGTTWERIPGQPTGYLAH 284
                     56778889********999875 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 3.3
                     -EEEE-SSTT--EEEE- CS
  End_N_terminal  47 arfvyeRiaGqPLyYvs 63 
                     a fv+  + Gq   + s
      KIR62045.1 709 ALFVFGTVDGQAGLFRS 725
                     679*******9766655 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         3   6.6e+03      28      42 ..     146     168 ..     139     169 .. 0.71
   2 ?   -3.5   0.1       6.4   1.4e+04      29      37 ..     197     208 ..     188     209 .. 0.59
   3 ?   -0.8   0.0      0.89     2e+03      29      39 ..     266     279 ..     261     286 .. 0.65
   4 ?   13.7   0.4   2.5e-05     0.056       1      39 [.     292     331 ..     292     338 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3
     Kelch_3  28 tn.tWaei.......aslppaRa 42 
                 ++ tW+ +       +++p+  +
  KIR62045.1 146 KGaTWQVTelpfkngGNMPGRGM 168
                 44588855558888899998766 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 6.4
     Kelch_3  29 n...tWaeiasl 37 
                 +   tWa++a+ 
  KIR62045.1 197 DygaTWAKVANF 208
                 333477777765 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.89
     Kelch_3  29 n...tWaeiaslpp 39 
                 n   tW++i+  p+
  KIR62045.1 266 NggtTWERIPGQPT 279
                 3346*****55554 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 2.5e-05
     Kelch_3   1 gdrlyifGGlgddgqdrl...ndvyvydldtntWaeiaslpp 39 
                 g++lyi +  +  g++++   +dv+ ++ +t+ W++i++ p+
  KIR62045.1 292 GGYLYIATSDT--GGPYDgakGDVWKFNRATGAWTQISPIPS 331
                 68899999999..88888999****************88887 PP

>> BNR_2  BNR repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.7   0.00068       1.5      59     119 ..     115     174 ..      85     273 .. 0.69
   2 ?    2.1   0.3     0.045     1e+02     190     200 ..     369     379 ..     353     399 .. 0.64
   3 ?   -2.1   0.0      0.81   1.8e+03     138     152 ..     543     557 ..     525     580 .. 0.68
   4 ?   -0.4   0.0      0.25   5.5e+02      85     119 ..     675     706 ..     656     743 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00068
                 ETTTEEEEEEEEEETT--HHT----EEEESSTTSS----E.HHHGGEEEEEE-SS--..EE- CS
       BNR_2  59 dpsgtliLfykvgvsvggwagskitrvtSkDdGktWsapr.rlpkspflnisgpvknkpiql 119
                 dp +t   +  vg   ++w   k + ++S+D+G+tW+  + + +++ ++  +g+++   +++
  KIR62045.1 115 DPVQTNRVYAAVGMYTNDWDPNKGAILRSSDKGATWQVTElPFKNGGNMPGRGMGER--LAV 174
                 455566667778999999999999999*********998877777755655555555..333 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.045
                 EESSTTSS-EE CS
       BNR_2 190 eSedgGetWsk 200
                 +S+dgG+tWs+
  KIR62045.1 369 RSTDGGATWSR 379
                 45555555555 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.81
                 EEEEEESSTTSS-EE CS
       BNR_2 138 allelsddggktWkk 152
                 +++ +s+dgg  W +
  KIR62045.1 543 SHVAFSTDGGANWFQ 557
                 455555555555544 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.25
                 EEESSTTSS----EHHHGGEEEEEE-SS--..EE- CS
       BNR_2  85 vtSkDdGktWsaprrlpkspflnisgpvknkpiql 119
                  +S+D+G+t+ ++  ++       +g++k++p q+
  KIR62045.1 675 WRSTDSGTTFAKQAGVSSA---VNVGFGKAAPGQT 706
                 6899999999999988866...5567777777555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 6312.43
//
Query:       KIR62046.1  [L=304]
Description: cation transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-43  147.6  11.8    4.6e-43  147.3  11.8    1.1  1  Cation_efflux  Cation efflux family
  ------ inclusion threshold ------
       0.14   12.3   0.4       0.25   11.5   0.4    1.4  1  ZT_dimer       Dimerisation domain of Zinc Transporter


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.3  11.8   5.2e-47   4.6e-43       1     199 []      22     214 ..      22     214 .. 0.98

  Alignments for each domain:
  == domain 1  score: 147.3 bits;  conditional E-value: 5.2e-47
  Cation_efflux   1 lilsllanlilalvelivglltnSlalladafhslsdlvsllllllalkls.rkppderfpfGygrlevlgalvsgllllglavfllleaiqklik 95 
                    l++++++ ++l++ve +++l t+Slall+da h+++d+++  ++l a+ ++ r ++d + +fG++rlevl+al ++lll g+av++l+ea+ ++  
     KIR62046.1  22 LWAAFALLAALMIVEAVTALGTGSLALLSDAGHMFTDVLGIGMALAAITATrRATADPQRTFGLYRLEVLAALGNALLLSGVAVYVLVEAVRRFG- 116
                    6899999********************************************9*******************************************. PP

  Cation_efflux  96 egereihaglalvvalvslvvnlalllilrragrklrsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvaslligliilysalkll 191
                     +++e+ +g +lvva+++l+ n+a + +lr +++  +s++l++a+l+vlgD+l+s+gv+ +a +i+ +   ++ +aDp+++++ig++il  +++l 
     KIR62046.1 117 -DPPEVTTGPMLVVAVLGLLANVAAFALLRSGAK--ESINLRGAYLEVLGDLLGSVGVIGAAALIMAT---GWWWADPAVAVAIGVFILPRTWRLG 206
                    .*****************************9988..*******************************8...559********************** PP

  Cation_efflux 192 keslseLl 199
                    + ++++L+
     KIR62046.1 207 RAAVRILV 214
                    ******96 PP

>> ZT_dimer  Dimerisation domain of Zinc Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   2.8e-05      0.25       7      78 ..     224     292 ..     218     293 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.8e-05
                 HHHHHHHTT-SS-EEEEEEEEE..-S----EEEEEEEE-TTS-HHHHHHHHHHHHHHHHHH-TT--EEEEEEEE CS
    ZT_dimer   7 eeireiiksvpgvkgvhdlrtr..ksGskifvdlhievdgdlsvkeaHeiadevekrikeefpgvadvliHveP 78 
                  ++++ +++vpgv++vhdl++   +sG + +++ h+++ +     e  ++ ++ + +++e f ++++ +  veP
  KIR62046.1 224 TAVHDRLAAVPGVVEVHDLHVWtlTSG-MEVASAHLTMAPG---AEVGAVLTAARTALHEDF-HIEHATLQVEP 292
                 567778889***********8844666.66789********...6777889999999*9999.99999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1924.47
//
Query:       KIR62047.1  [L=568]
Description: iron ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-32  113.1  35.4    4.3e-20   72.2  14.4    3.3  4  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   2.2       0.1   1.9e+03      29      69 ..      13      85 ..      11      88 .. 0.71
   2 !   55.1  12.9   4.3e-19   7.7e-15       4     174 ..      81     269 ..      78     273 .. 0.90
   3 ?   -1.6   0.4      0.11   1.9e+03      20      38 ..     302     320 ..     290     368 .. 0.60
   4 !   72.2  14.4   2.4e-24   4.3e-20       2     180 ..     370     554 ..     369     559 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.1
  BPD_transp_1 29 slPsfvlaillvlvf................................vilsilghlilpviillllsaapyvr 69
                  ++P++++++l +++f                                + +s +++li++++ +ll +++++++
    KIR62047.1 13 WFPYVLVFPLALVLFgyvvqpmfatfaesvgvdgvenygsfltgggvARSSLVTSLIISAASVLLCGIVGVAM 85
                  6788888888777777777777788888888888888887777777766666777777777777777766665 PP

  == domain 2  score: 55.1 bits;  conditional E-value: 4.3e-19
  BPD_transp_1   4 lGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf................vilsilghlilpviillllsaapyvrlirraalrslpk 81 
                   +G+ +a    +++++++kl+  +i v+ +lP+++ ai ++l+                  +     ++i +v+++ ++++ py++l  +aal  ++ 
    KIR62047.1  81 VGVAMAfllKRFSFPGRKLIEAIILVPAALPPLIGAISFQLLYsetgilprglqqlfgaENPVLPFSGIAGVLVVHTFTMYPYFYLSASAALGGMDP 177
                   7888888888999*********************88888866688999**********6444445567777************************** PP

  BPD_transp_1  82 dlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadi 174
                   + +eaa+ lGasr ++ r+v+lP++ p +++  +l+f+ +l  +++++++g ++ +++++     + d++++s +++ +l+++ +l++l +++
    KIR62047.1 178 SVEEAAYNLGASRVRVWRTVLLPMLTPALVSASLLVFMTSLASYTAPLLFGVDQTMTMQIYINRTNGDLPMAS-TYASVLGVVSVLFLLGMRW 269
                   ***************************************************9999***************999.8888888888888777666 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.11
  BPD_transp_1  20 lrpliivllslPsfvlail 38 
                    + l  ++l  P+  +a++
    KIR62047.1 302 ASLLATAVLLAPVATIALV 320
                   3333333333333333333 PP

  == domain 4  score: 72.2 bits;  conditional E-value: 2.4e-24
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf......vilsilghlilpviillllsaapyvrlirraalrslpkdlveaara 89 
                   +++G+l+a   ++  ++++ ll++ + + ++lP  v+ai l+ +f      ++ ++l  +++ + +++++ ++p+v++  +aal +l+  l+eaar 
    KIR62047.1 370 VVVGVLIAyavRRLDFRGRGLLDVAVMLAWALPGTVVAINLISAFstgnafSFGQVLIGTFWIMPLAYFVRFLPLVFRSSSAALAQLDPALEEAARN 466
                   689999999999**************************************9778888889999999******************************* PP

  BPD_transp_1  90 lGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlld 180
                   lGas w+ f +v+l+++lp +++g++laf++ +g++v+  ++ ++   + ++   i++++ys+   g+++a++ + ++l++v++++   l+
    KIR62047.1 467 LGASWWRAFGTVTLRLMLPGVLAGALLAFVHGVGEFVASVLIYTS--ETAPISVEINNRMYSFEV-GTAAAYGMLQVVLIFVVMVVSGRLE 554
                   ******************************************988..6*****************.****************999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 4241.98
//
Query:       KIR62048.1  [L=295]
Description: ROK family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-32  113.5   0.0    1.8e-32  113.0   0.0    1.2  1  ROK          ROK family
     0.0017   17.4   0.2     0.0044   16.1   0.2    1.6  1  Glucokinase  Glucokinase


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.0     2e-36   1.8e-32       2     292 ..       9     288 ..       8     290 .. 0.89

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 2e-36
                 EEEEE-SSEEEEEEEETTS-EEEEEEEEEHCCH.HCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGC.GCCCCTTHHHHHHHHHTS CS
         ROK   2 igidiGgtkialalvdeegeilarekvetptet.teetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpn.itwenfdlvekleerlnv 98 
                 +gid Ggtk+a+ + d++g  lare+v+t +e   +++l  a++ + +   ++ + l+a g++spG+++    +i  +pn ++w+   l++++  rl+ 
  KIR62048.1   9 LGIDFGGTKMAVGVADAAGRLLARERVPTYAERgAPQALDRALELAAKLVGQAGGPLAAAGVASPGVVR--PDGIDLAPNvPGWDRLRLADAVRDRLGA 105
                 79*************************876654278999999999999999999999***********4..4467777776999*************** PP

                 -EE.EEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BS.BHHHCCSHHHHHHCHTCCGTTS CS
         ROK  99 pve.venDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqg.ClEtlasgralekraqqkgekl 195
                 pv+ v+nD naaalaE  +ga  d++  ++v +gtGv a+  + g+++ G++G age+G   +         +  g  lE   sgral + a + g   
  KIR62048.1 106 PVVaVDNDLNAAALAELRLGALRDADPGLVVGIGTGVAAALTVRGAVLPGHHGAAGEIGYAVAGG-------PWPGtMLELDFSGRALDRLAADLGVPG 197
                 *86379*****************************************************987654.......577778****************88888 PP

                 -HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHHHHHHHHHHHCCTTTTCCCT-EEEE-S-STTHHHHHHHHHHC CS
         ROK 196 eakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadklleairklvkkylnkklevpvveivaaklgdkagllGaaaLak 292
                  a+ +  +a  +   a +++   ++ la+ +++   l+dpq++vl Ggv  +d     ir l+ ++l+  l+  + e+v +++ d+a+llGa++La 
  KIR62048.1 198 AAAGL-AAAAASPGPARDALTARVDELARHLVTCCLLVDPQRVVLVGGVAGSDL----IRGLLVERLAAVLPYRP-EVVLSGFADDAALLGAVLLAG 288
                 88885.667777899**********************************99875....46777777888888888.699***************985 PP

>> Glucokinase  Glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   4.9e-07    0.0044       4     146 ..      12     149 ..       9     168 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.9e-07
  Glucokinase   4 DiGGTkarlalveaeeeelelleiekyasadyas.leealqaflaeaeaevkrpksavlAvAgpvegdevel.tNlp.Wv.is.eeelakelgleave 96 
                  D GGTk  + +++a+++ l  +++ +ya +  ++ l+ al+   + + ++    ++a +A  g v+ d ++l  N+p W  ++ +++++++lg + v 
   KIR62048.1  12 DFGGTKMAVGVADAAGRLLARERVPTYAERGAPQaLDRALELAAKLVGQAGGPLAAAGVASPGVVRPDGIDLaPNVPgWDrLRlADAVRDRLGAPVVA 109
                  99****************99999999999988762677777777766666677777999************988986695333257899********* PP

  Glucokinase  97 liNDfeavayaiplleaedlvqlgggkkdaeapiavlGaGTGLGvallip 146
                  + ND++a a+a  +l+          + ++ +p +v+G GTG  +al ++
   KIR62048.1 110 VDNDLNAAALAELRLG----------ALRDADPGLVVGIGTGVAAALTVR 149
                  ********99976665..........445566778888888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2158.13
//
Query:       KIR62049.1  [L=72]
Description: hypothetical protein TK50_22725 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 509.36
//
Query:       KIR62050.1  [L=484]
Description: hypothetical protein TK50_22730 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-24   85.7   0.1    1.8e-23   83.4   0.1    1.9  1  Amidohydro_1  Amidohydrolase family
    4.6e-22   79.1   0.5    2.1e-17   63.8   0.1    2.2  2  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.1     2e-27   1.8e-23       1     344 []      92     441 ..      92     441 .. 0.74

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 2e-27
                   EEEE-EEEEEEECETTECSSS...GHHHHH........STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH....HHHHHHHHHHTSSSEEEEEEE CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrga...tledwl........vppetaaealesgiktalksGtttvadmgattst....giealleaaeelplglrilgg 82 
                   i +PG++ +H H  + l+r+     +e +          +p++ ++ +  g+++  ++G+ttv++ + + ++    +++ l   a+ l         
    KIR62050.1  92 IAMPGFVETHYHMWSALGRNFvstGFEYFAaksatvaaYQPDDFYHSVLLGLVECASAGITTVNNWSHN-VRgpeyADAELHAHADGL--------- 178
                   679*********977777666777555555999999*****************************8883.444464334444444443......... PP

                   SSEGGS..........GCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTT CS
  Amidohydro_1  83 kvsldr..........gsaetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafget 169
                     + +r           ++  + a + +++a +  + k + dg+v  +++ +++ +++   l+e++ e++kr+lp+++H +  + +    ++a +  
    KIR62050.1 179 --VRARysyghrdgqpATQPIDFADIDRVAATWFGK-KSPFDGLVHLGVNLRGPGQLP-TFLAEMA-EVSKRKLPISVHSGQGPTTA---VHAAD-- 265
                   ..3333333336755544455566666666666444.44779***************5.8888888.78899********6655554...23333.. PP

                   EEEETTTTSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHH...SEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHHHH CS
  Amidohydro_1 170 iehgthlevaeslglldeiklilahgvhltpteaellkerlkeagvahcpfsnsi...lrsgrealrkaldeGvkvglgtDgaasgnslnlleelrl 263
                            +e+ g+l++  ++l h  +++ ++   + +   +a v+    s+++    +     l ++l +Gv v+l+ D a+s   +n++e++ +
    KIR62050.1 266 ---------LEKMGFLGP-DFLLCHALPFDEADRQAMVRT--NAPVSFSVHSELRlgtAGGFHGQLLRMLAAGVTVSLSFD-ASSLAPINMFESMNV 349
                   .........344455555.777777777776655555566..6666655555555333445566799999***********.************999 PP

                   HHHHHHHCCTT.TTHCHCHHH...HHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC...CT......CGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 264 alklqrgllye.deegglslk...ealrmaTingAkalglddkvGsievGkdADlvvvdl...di......laafvglkkdgnvkkvivkGklv 344
                   a     g  +   +++ l++    +a++maTingAkalgl   +Gsi++Gk+AD+v++     +i       +++v ++ + n+++v ++G++v
    KIR62050.1 350 AW--NLGIPWVgTDTAALPPVvfrQAIEMATINGAKALGLQAVTGSITPGKRADIVLIRAddlNIapigdlESTVVRSATPANIDTVLIDGRIV 441
                   99..444444464466677743438*********************************8886522667888*********************98 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.2e-06     0.029       1      23 [.      84     106 ..      84     116 .. 0.89
   2 !   63.8   0.1   2.4e-21   2.1e-17     150     472 ..     126     441 ..     111     442 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.2e-06
  Amidohydro_3   1 eviDakGrlvlPGFvDsHtHlag 23 
                   +viDa+ ++ +PGFv+ H H+ +
    KIR62050.1  84 RVIDASKMIAMPGFVETHYHMWS 106
                   69******************755 PP

  == domain 2  score: 63.8 bits;  conditional E-value: 2.4e-21
  Amidohydro_3 150 la.plareaeaaavaaalaalasyGitsveagggnvsslddleplfeltaeeklplrviikelldaaerlglpls.pgseeltigavklfadgvlgs 244
                   ++ ++ +++  ++v  +l+++as Git+v  +  nv + +       ++++e   l+++  +l+ a +  g++ + p +  + + +++  a+     
    KIR62050.1 126 TVaAYQPDDFYHSVLLGLVECASAGITTVNNWSHNVRGPE-------YADAE---LHAHADGLVRARYSYGHRDGqPATQPIDFADIDRVAA----- 207
                   333558999999*****************88888876665.......55555...5556666888889999988867777777777777777..... PP

  Amidohydro_3 245 rtalltepyf.........tgwpdfedea...laelvaaadergldvaihaigdaavddvldafeaaaekngnqdrrrlehaegvtesqiervaalq 329
                   +++  + p+          +g +     +   + + +a++ +r+l++ +h+ +  +++      +a  ek+g+ +      + ++++++++r a ++
    KIR62050.1 208 TWFGKKSPFDglvhlgvnlRGPG-----QlptFLAEMAEVSKRKLPISVHSGQGPTTA----VHAADLEKMGFLGP-DFLLCHALPFDEADRQAMVR 294
                   78888888778888455554555.....444488888999*****************9....4445579******8.999999999*********** PP

  Amidohydro_3 330 vaagvqpvfnfedelldsrlg.perargstpvkellnagvkvalgsD.apvgpfdpwprig.aavmrktrrggevlrpdeelsleealalyTrgpAk 423
                     a+v+  f     + + rlg +  ++    + ++l+agv+v+l+ D + ++p++ + ++  a++ + ++ g + + +   + +++a+ + T ++Ak
    KIR62050.1 295 TNAPVS--FSV---HSELRLGtAGGFH--GQLLRMLAAGVTVSLSFDaSSLAPINMFESMNvAWNLGIPWVG-TDTAALPPVVFRQAIEMATINGAK 383
                   *****9..433...4567888555555..46999*************9666666665555423444444544.78899999**************** PP

  Amidohydro_3 424 algledrkGtLevGadADlvvldadpldvdppelaear.........vrltvvdGrvv 472
                   algl+  +G++ +G++AD+v+++ad l + p  + e +         +  +++dGr+v
    KIR62050.1 384 ALGLQAVTGSITPGKRADIVLIRADDLNIAPIGDLESTvvrsatpanIDTVLIDGRIV 441
                   ***********************99999988777777788888899999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3690.79
//
Query:       KIR62051.1  [L=211]
Description: copper resistance protein CopC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-19   68.9   0.0    9.7e-19   68.2   0.0    1.4  1  CopC             CopC domain
  ------ inclusion threshold ------
        4.6    7.4   8.7       0.73    9.9   2.9    2.1  2  DUF2892          Protein of unknown function (DUF2892)


Domain annotation for each model (and alignments):
>> CopC  CopC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   1.1e-22   9.7e-19       1      91 [.      34     125 ..      34     126 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 1.1e-22
        CopC   1 HaalvsstPaagatvaaapeevtLtFsepvel..skvkvtdpdgkeevetvdaktveaelkvplpelaaGtYtVewrvvsaDGHpvsGsfsFt 91 
                 H++l+ s+Pa+ga++a+ape ++L+F  ++++  +k++vt+pd+ ++  +++++ +++++++p+++++aG Y V ++  saDGHp++G+++Ft
  KIR62051.1  34 HNSLSGSNPANGARIATAPELIELRFLAKPNPgtTKITVTGPDNVAA-LDGEPTFSGTRVRIPFAPGKAGLYIVGYQLGSADGHPIKGEVRFT 125
                 9******************************************9555.5999999*************************************9 PP

>> DUF2892  Protein of unknown function (DUF2892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.3     0.084   7.5e+02      32      44 ..      12      25 ..       3      34 .. 0.54
   2 ?    9.9   2.9   8.2e-05      0.73      19      50 ..     169     200 ..     165     201 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.084
     DUF2892 32 w.gwllglvGavll 44
                w ++l +++G+ l+
  KIR62051.1 12 WlAVLGVALGVSLV 25
                33444444444444 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 8.2e-05
     DUF2892  19 vllllallglsggwgwllglvGavllltgltg 50 
                 ++ +++  + +g++gwl++l G+vll++++ g
  KIR62051.1 169 AVPAASESTDGGPPGWLWALGGGVLLVAAAAG 200
                 45455555555666***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1512.42
//
Query:       KIR62052.1  [L=132]
Description: hypothetical protein TK50_22815 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-24   85.2   0.0    3.9e-24   85.0   0.0    1.0  1  UPF0047       Uncharacterised protein family UPF0047
  ------ inclusion threshold ------
       0.12   12.6   0.0        4.8    7.4   0.0    2.1  2  RecA_dep_nuc  Recombination enhancement, RecA-dependent nucle


Domain annotation for each model (and alignments):
>> UPF0047  Uncharacterised protein family UPF0047
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.0   4.4e-28   3.9e-24       1     113 [.      16     127 ..      16     129 .. 0.94

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 4.4e-28
                 E-HHHHHHHHHHHT.SEEEEEEEESSSSEEEEEEESSSHHHHHHHHHHHHHHSTTT.T-GGGTTS..THHHHHHHHHH-SEEEEEEETTEE---TTEEE CS
     UPF0047   1 diteeveeavkesgvkeGlvlvfsrhttasltinEnadpdvqeDleealeklvpee.eYrhnaegpdnadaHlkssllgssltipvedgklalGtwqsi 98 
                 dit+e e++   sg  +Gl++vf++h+ta+l++ E+  ++  +Dl +al++l+p++ ++rh++  p +++ H+   l+ +  t+pv dg+lalGtwqsi
  KIR62052.1  16 DITAEAERF--VSGAGDGLLHVFVPHATAGLAVIET-GAGSDDDLLRALDDLLPTDdRWRHRHGSPGHGRDHVLPGLVPPYATLPVIDGRLALGTWQSI 111
                 79*******..899*********************9.9999*********************88899******************************** PP

                 EEEESS.-SSEEEEEE CS
     UPF0047  99 ylveld.gpreRkvvv 113
                 +lv+ + ++ +Rkv  
  KIR62052.1 112 CLVDTNgDNPTRKVRF 127
                 ******5558899975 PP

>> RecA_dep_nuc  Recombination enhancement, RecA-dependent nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0    0.0096        86      64     101 ..      28      64 ..       4      66 .. 0.81
   2 ?    7.4   0.0   0.00053       4.8      52      74 ..      70      94 ..      67     105 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0096
                   HHHTT---SS-BTTB--HHHHHHHS--HHHHHHHHHHH CS
  RecA_dep_nuc  64 redpglvavhadsvvtgkkeFeerygkedeLLeyaeel 101
                     d gl+ v+ +  ++g    e   g++d+LL    +l
    KIR62052.1  28 AGD-GLLHVFVPHATAGLAVIETGAGSDDDLLRALDDL 64 
                   344.8999************************876655 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00053
                  HHHHT----HHHHHH..TT---SS- CS
  RecA_dep_nuc 52 awhhqaaapaevred..pglvavha 74
                  +w h++++p  +r++  pglv+ +a
    KIR62052.1 70 RWRHRHGSPGHGRDHvlPGLVPPYA 94
                  7************9999***99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1000.14
//
Query:       KIR62053.1  [L=199]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-19   70.5   6.8    1.2e-19   70.5   6.8    2.8  2  TetR_C_31  Tetracyclin repressor-like, C-terminal domain
    1.1e-07   31.5   1.5    1.3e-07   31.3   0.3    1.8  2  TetR_N     Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> TetR_C_31  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   8.6         2   1.8e+04      36      63 ..       3      31 ..       1      78 [. 0.61
   2 !   70.5   6.8   1.3e-23   1.2e-19       3     106 ..      82     188 ..      80     189 .. 0.94

  Alignments for each domain:
  == domain 1  score: -4.7 bits;  conditional E-value: 2
                CSCHHHHHHHHHH.HHHHHHHHHHHHHHC CS
   TetR_C_31 36 rrPeLraalarlr.ralrealaallaalG 63
                r+P+ ra+la+++ r l++a a+ l+   
  KIR62053.1  3 RNPQRRALLADAGlRVLAAAGARGLTHRA 31
                66666666665553444444555554333 PP

  == domain 2  score: 70.5 bits;  conditional E-value: 1.3e-23
                 CCHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHCSS-HHHHHHHHHHHHHHHHHHHHHSG...TS-HHHHHH CS
   TetR_C_31   3 reeladlladlldraladrertlAryelfleaarrPeLraalarlrralrealaallaalGlpdpeeaarllvaaldGllldrLagp...aadpraevr 98 
                  + ++d+++ +++r+++++  t A++el+leaar+PeL + la+  r+  +  +a++aa+Glp+ + +++ll++a+dGllld L+++   + d +++v 
  KIR62053.1  82 IDLTTDYVRYIVERTTREPYVTRALIELRLEAARHPELGRGLAEVLRRGYADDVAFHAAAGLPGGAFEIALLHYAVDGLLLDLLTTSidaGFDVDEVVS 180
                 578999*********99**********************************************9999*******************9877667799999 PP

                 HHHHHHT- CS
   TetR_C_31  99 ellralld 106
                 +l+ +l++
  KIR62053.1 181 ALVSRLVG 188
                 99999986 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.3   1.4e-11   1.3e-07       3      47 .]      13      57 ..      11      57 .. 0.96
   2 ?   -2.8   0.1      0.64   5.8e+03       6      25 ..      59      78 ..      58      78 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.4e-11
                HHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  3 daArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                da+++++a  G +++t r++ ++AGv  g+   yFp++e+Ll al
  KIR62053.1 13 DAGLRVLAAAGARGLTHRAVDAEAGVPTGTASNYFPTREALLGAL 57
                89****************************************885 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.64
                HHHHHHHHTTT--HHHHHHH CS
      TetR_N  6 relfaerGydattvreIAkr 25
                +++f+++  d++ ++++A+r
  KIR62053.1 59 ERVFERYAPDEAVLARLAAR 78
                57888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1404.91
//
Query:       KIR62054.1  [L=243]
Description: thiamine biosynthesis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-42  145.4   0.4    7.5e-31  107.6   2.0    2.0  2  ApbE      ApbE family


Domain annotation for each model (and alignments):
>> ApbE  ApbE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0     6e-13   1.1e-08       1      72 [.       1      82 [.       1      87 [. 0.85
   2 !  107.6   2.0   4.2e-35   7.5e-31     119     248 ..      87     214 ..      82     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 6e-13
                TTEEEEEEEE..........HHHHHHHHHHHHHHHC-SS-TTSHHHHHHCTS.S-EEE-HHHHHHHHHHHHHHHHTTTSS-T CS
        ApbE  1 mgttvsitlyg.........leaaieaelerlekllsryrpdSelsrlNrak.kevkvspelaellkaaleiseltdgafdp 72
                mgt +s+ l++         l+++ +a l+++++++s+yr+dSe+ r+ + +    ++sp+l ++l+++ ++  +tdg fd 
  KIR62054.1  1 MGTAISLDLADdlpagrlheLAEETFAWLREVDARFSTYRADSEVRRFDQGEvLLSEASPDLRAVLARCADLWGDTDGFFDA 82
                99******973345567667557777***********************87534469************************7 PP

  == domain 2  score: 107.6 bits;  conditional E-value: 4.2e-35
                 ----TTTHHHHHHHHHHHHHHH.TT-EEEEEETTEEEEEC..-ECT-EEEEEE-TTS..SEEEEEEESSS.EEEEEETTSSEEETEEEES-B-TTTSSB CS
        ApbE 119 kLDlggiaKGyavdrvaellka.giksalvnlGGdiralG..pdgkpwrvgiedPra..ellavlslsdd.avaTSGdyeryfegkryhHiidprtgyP 211
                 +LD +g+ KG+a++ + + l   g  + +vn+GGd+r+ G  + g+pwr+g+++P +  ++  vl+ + d a+aTSG yer +      H++dpr g P
  KIR62054.1  87 ALDPSGYVKGWAAQVASDRLLVaGAPNHCVNAGGDVRVRGlsAGGRPWRIGVRHPWDetSTCLVLTGT-DlAIATSGVYERGY------HVLDPRRGAP 178
                 79****************88888******************87779**********634545555555.36**********65......9********* PP

                 ---SECEEEEEESC.HHHHHHHHHHHHHHHHHHHHHHC CS
        ApbE 212 aesglasvtViads.alADalaTalfvlgeekalelle 248
                 a +gl+svtV+  +   ADa+aTa++++g + +  +l+
  KIR62054.1 179 A-TGLRSVTVVGADlGVADAYATAAVAMGVA-GIGWLD 214
                 *.9********7665**************77.455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1612.85
//
Query:       KIR62055.1  [L=83]
Description: hypothetical protein TK50_23095 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.079   13.4   0.1       0.13   12.7   0.1    1.3  1  SPOR      Sporulation related domain


Domain annotation for each model (and alignments):
>> SPOR  Sporulation related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   7.2e-06      0.13      47      66 ..      47      66 ..      43      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.2e-06
                EESSBCTCCHHHHHHHHCHH CS
        SPOR 47 rvGpfasreeAqaalkkLka 66
                ++Gp+as ++A++al+++++
  KIR62055.1 47 VLGPYASAADAENALQQVQE 66
                68***************993 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 627.96
//
Query:       KIR62056.1  [L=304]
Description: peptidase S66 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-34  117.0   0.0    7.4e-34  116.4   0.0    1.3  1  Peptidase_S66   LD-carboxypeptidase N-terminal domain
    6.1e-32  110.8   0.0    8.2e-32  110.4   0.0    1.2  1  Peptidase_S66C  LD-carboxypeptidase C-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_S66  LD-carboxypeptidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   0.0   8.3e-38   7.4e-34       2     121 .]      14     129 ..      13     129 .. 0.96

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 8.3e-38
                    EEE-SSS-GGGSSH.HHHHHHHHHHHHCTEEEEEGCTC--TTTTCSS-HHHHHHHHHHHHC-TTECEEEES--SS-CHHCHHHH-HCCHHCS--EE CS
  Peptidase_S66   2 aivapSsglkkeeekeeleraievleelglevvlgksaaksagylagtdeeRaadLnealadpeikaiicarGGygaarllpyldfdaikknpkil 97 
                     +v+pS++++     e+++r++e+l+ +gl++v +++a++++gylag de RaadLn+a+adp+++ +ic+rGGyga r+++ ld++a+++ pk++
     KIR62056.1  14 LLVSPSGPTR----PERVARGVELLTGWGLRPVPAPHAYARRGYLAGADELRAADLNAAFADPQVRGVICTRGGYGAQRVVDALDMAAVRRDPKVV 105
                    589***8754....55**********************9999****************************************************** PP

                    EE-CCHHHHHHHHHHCHTBSEEE- CS
  Peptidase_S66  98 iGySDiTalhlalyaktglvtlhg 121
                     G+SDiTal+lal++ + l+ +hg
     KIR62056.1 106 AGFSDITALQLALWRGARLAGVHG 129
                    ******************999998 PP

>> Peptidase_S66C  LD-carboxypeptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.0   9.2e-36   8.2e-32       1     122 [.     177     288 ..     177     290 .. 0.94

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 9.2e-36
                     EEEEEEEEHHHHHCCTTSTTS---TT..EEEEEE--TTHHHHHHHHHHHHCTSTTGGG--EEEEEE--..G...CC...---HHHHHHHHHT-GG CS
  Peptidase_S66C   1 eGrliGGnlsvlasllgtpylpekdlkgkILflEdvsespyridrmLtqlkeagvldkvkGivlGrftkpeekeeeeekeeykealeevlaeile 95 
                     +G+l+GGnl++la++lgt  +p  dl+g++L++Edv+e+py++drmLtql++ag+ld+++G+++G+ft++++   +      + ++ +vl+++l+
      KIR62056.1 177 TGTLLGGNLCLLAATLGTADMP--DLTGAVLLVEDVQEPPYKVDRMLTQLRRAGALDGLAGVAVGQFTDCAD--GW------DTTVVDVLTDRLG 261
                     69********************..9*******************************************9963..33......236999******* PP

                     GTTS-EEEEESESSSBS---EEETSEE CS
  Peptidase_S66C  96 dlkiPvlynldiGHtspnltlplGaka 122
                     dl++Pvl +l+iGH+  +lt+p+G++a
      KIR62056.1 262 DLGVPVLGGLPIGHGLGQLTVPVGTEA 288
                     ************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2470.67
//
Query:       KIR62057.1  [L=255]
Description: glutamine amidotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-13   49.8   0.0    4.3e-13   49.5   0.0    1.1  1  GATase         Glutamine amidotransferase class-I
    0.00044   20.1   0.2    0.00088   19.1   0.2    1.6  1  Peptidase_C26  Peptidase C26


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   4.8e-17   4.3e-13      50     173 ..      65     186 ..      21     190 .. 0.85

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 4.8e-17
                 EESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEEEEEEEEEEETTT....CGGTTTTSEEEEEEEEEEEEESGCHHHTTEEE CS
      GATase  50 gGpgspgvegkieaikearenkiPiLGICLGmQllaiefgrkvvkekekehhggtmrlgddet....allyglknevierhrHryevnpkelepaglev 144
                 g pg+p  ++   ++++a  +++P LG+CLG Qlla + ++ v++    +   g   +g +++     l++  +   ++ ++H +e+++   +p+g + 
  KIR62057.1  65 GTPGAPWFGKLEGLLRKAVRHRVPTLGVCLGAQLLATAHAGLVERSP-SGPEVGPAVVGRRDAaetdPLFRYVPLIPDVLQWHTDEITE---LPHGATL 159
                 335555589999999*****************************999.55556666666666668999999999999************...******* PP

                 EEEEETTEEEEEEEEETTTEEEESSBTTS CS
      GATase 145 takseddeelmeiiekknpfvgvQFHPEs 173
                 +a+s +    + ++++ ++++g+QFH E 
  KIR62057.1 160 LAAS-TR-YPHQAFRLGDRAWGLQFHIEC 186
                 9999.44.58999999999*******986 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   9.8e-08   0.00088      97     127 ..      78     108 ..      76     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 9.8e-08
  Peptidase_C26  97 LiraalergvPilgiCrGlqllnvalGGtly 127
                    L+r+a++++vP lg+C+G qll+ a  G + 
     KIR62057.1  78 LLRKAVRHRVPTLGVCLGAQLLATAHAGLVE 108
                    899**********************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1956.37
//
Query:       KIR62058.1  [L=104]
Description: transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-09   36.5   5.5    6.5e-08   32.9   5.5    2.4  1  RDD       RDD family


Domain annotation for each model (and alignments):
>> RDD  RDD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   5.5   3.6e-12   6.5e-08      53     141 .]      22      95 ..       1      95 [. 0.83

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 3.6e-12
         RDD  53 lvlllvllvyqllllskkgqTlGklllglkvvd.edgrklglaqaliRalllllllvlglslvlllllligflfvlfsrkrqalhDklag 141
                 ++ ++vl+v ++++l  ++qT+G+ +++++ ++ +dg ++gla+al+R l              ll+l++ +l++  +++r++lhD+l+g
  KIR62058.1  22 WAPVAVLIVEYGFFLGLFAQTPGMYVTRIRCLSwADGGRIGLARALLRGL--------------LLALVVPALIM--DEHRRGLHDRLTG 95 
                 44566899999999999*******************************98..............34555555544..9999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 705.89
//
Query:       KIR62059.1  [L=302]
Description: radical SAM protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-12   48.7   0.0    4.1e-12   46.8   0.0    1.8  2  Radical_SAM  Radical SAM superfamily
    4.1e-05   24.0   0.1    7.1e-05   23.2   0.1    1.4  1  LIAS_N       N-terminal domain of lipoyl synthase of Radical_


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   4.5e-16   4.1e-12       7     166 ..      72     226 ..      68     227 .. 0.94
   2 ?   -0.8   0.0      0.19   1.7e+03     114     143 ..     245     272 ..     224     286 .. 0.65

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 4.5e-16
                  ESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC....CCTEEEEEEECSSCHGHHHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   7 CnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlakla....vpgiritvetngtlpdeeklerllel 100
                  C++rC fC++      +g++++ + +e  + ++++ +++g ++ +++g   ++ pd   +l ++  ++     pg  + + ++ +   +e+l++   +
   KIR62059.1  72 CTRRCDFCQID-----TGKPAEFDADEPRRVAESV-VSMGLRYATITGVARDDLPDGGAWLYAETVRQihalQPGCGVELLIPDFNAVPEQLAEVFGA 163
                  ***********.....6******************.9**********************99999999989999999999999999988********** PP

                  T-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 101 gvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleellel 166
                  ++ ++++++e++    ++++  +   +e+ l++++ +r+ g+  ++++++++ Ge ++e+ + l++
   KIR62059.1 164 RPEVLAHNVETVPRI-FKRIR-PAFRYERSLDVIRQARADGLV-TKSNLILGMGEERAEVSQALRD 226
                  **************9.99999.******************999.9999999999999998877765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.19
                  HHHHHHHHTCTSHHHHHHHHHHHHHHTTSE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 114 dekvlklmnrghtfeevlealeklreagik 143
                  ++ ++  + r   +ee++e+ e + e g+ 
   KIR62059.1 245 PR-HHPVT-RWVKPEEFVELREEAEEIGFA 272
                  44.55555.555566666666666666554 PP

>> LIAS_N  N-terminal domain of lipoyl synthase of Radical_SAM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1     8e-09   7.1e-05      72     108 .]      15      51 ..       3      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 8e-09
      LIAS_N  72 rLPswlktkiPlGknynkikndlreLnLhtvCeeaRC 108
                 r P+w+k k  +G +y++++  +    LhtvC ea C
  KIR62059.1  15 RKPPWIKVKAKMGPEYTQLRGLVSREGLHTVCQEAGC 51 
                 78*********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2174.36
//
Query:       KIR62060.1  [L=213]
Description: octanoyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-08   35.1   0.0    1.6e-08   34.5   0.0    1.2  1  BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family


Domain annotation for each model (and alignments):
>> BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0     9e-13   1.6e-08      25     131 .]      65     166 ..      55     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 9e-13
                    -EEEEEEESS-B-B--B-TTSEEEEEEEEESS...-CCGTHHH..HHHHHHHHHHHH.......HHTT-TTEEEETTTEEEETTEEEEEEEEEEEE CS
  BPL_LplA_LipB  25 glvvvrrqtgGrnvwhspkgeltyslllspeqktfqnrvlely..vsllvlavlealgy.rdskpgiegipvfikwpnDlyvngrKlaGiavtstr 117
                    g+ vv+  +gG+ +wh+p++ + y ++ +p+   ++  v++ +  + +l ++v+ + g   d  +g +g++v      D     rK+a+i++++ r
     KIR62060.1  65 GTPVVDVDRGGKITWHGPGQLVGYPIVKLPDP--VD--VVAYVrrTEQLLIDVCAEFGLaADRVQGRSGVWVP----EDDRGPARKVAAIGIRVAR 152
                    567999***********************883..44..55555677777777777776345678899999999....888889************* PP

                    TTS-EEEEEEEEEE CS
  BPL_LplA_LipB 118 gktlhhivigvgvn 131
                    g+t h+++i+++ +
     KIR62060.1 153 GVTQHGFSINCDCD 166
                    ***********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       191  (0.0106531); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1400.52
//
Query:       KIR62061.1  [L=79]
Description: hypothetical protein TK50_23260 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 567.01
//
Query:       KIR62062.1  [L=247]
Description: cobalamin biosynthesis protein CobS [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-46  158.9  31.4    2.1e-46  158.7  31.4    1.0  1  CobS        Cobalamin-5-phosphate synthase
  ------ inclusion threshold ------
        6.9    6.3   5.8       0.81    9.3   0.4    2.3  2  ATP-synt_J  ATP synthase j chain


Domain annotation for each model (and alignments):
>> CobS  Cobalamin-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.7  31.4   2.4e-50   2.1e-46       1     204 []       4     241 ..       4     241 .. 0.81

  Alignments for each domain:
  == domain 1  score: 158.7 bits;  conditional E-value: 2.4e-50
        CobS   1 alsflTrlPvp.......elaralaffPlvGlllGlll.llallllllll.llaallavaalvlltgglHlDGlaDtaDglgsgrdrerrleImkDsrv 90 
                 al+ +T+ Pv          ++a+a++P+vG+llG++l  ++ll+ ++++ l+aa++++ a +llt+glHlDGlaDt+D+lgs+r+   +leImk ++v
  KIR62062.1   4 ALTTFTVWPVRagrvdraTAGTAMALAPAVGALLGAALaGVLLLVGAVAApLVAAAVTLGAGALLTRGLHLDGLADTVDALGSYRRGAAALEIMKKPDV 102
                 7899******766554322255***************98888887777775669999999*************************************** PP

        CobS  91 GafGvlalvlvlllkvaalaala..........lllapvlsRlaallaiallpya..eeglgalfaeaqkklv.....llalavlllll.all...... 165
                 G+fGv+alv+vll+++aala+la          +++a +++Rl+++la++++ +a  ++glgal+a+++  ++     +   a ++l++ a++      
  KIR62062.1 103 GPFGVAALVVVLLVQAAALAELAarswpaalagVVAATAAGRLGVTLACRRGVPAarPDGLGALVAGTVGPVAagvgtA---A-VALVAvAAVpgrpwq 197
                 ******************9888788888888899999****************99877********9877733232221...1.221221222566666 PP

        CobS 166 ......laallvalllrrlarrklggvtGDvlGavieltellvll 204
                       +a+++++lllr+l+rr lgg+tGDvlGa++e++++lv+l
  KIR62062.1 198 gpvavlAALAVAVLLLRHLVRR-LGGITGDVLGATVEVVTTLVYL 241
                 666654444446778999****.*****************99975 PP

>> ATP-synt_J  ATP synthase j chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.4   9.1e-05      0.81      11      31 ..     103     123 ..      96     130 .. 0.84
   2 ?   -3.5   0.4      0.89     8e+03      20      31 ..     174     185 ..     167     188 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 9.1e-05
                 HHHHHHHHHHHHHHHHHHHHS CS
  ATP-synt_J  11 wPFfaaglivlygvnkaqnam 31 
                  PF +a+l+v+ +v++a+ a 
  KIR62062.1 103 GPFGVAALVVVLLVQAAALAE 123
                 6**************998765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.89
                 HHHHHHHHHHHS CS
  ATP-synt_J  20 vlygvnkaqnam 31 
                 v+ gv+ a+ a+
  KIR62062.1 174 VAAGVGTAAVAL 185
                 667777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1851.21
//
Query:       KIR62063.1  [L=66]
Description: hypothetical protein TK50_23325 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   11.4   0.0       0.19   11.1   0.0    1.1  1  ThiF      ThiF family


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.1e-05      0.19      35      55 ..      37      57 ..      33      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.1e-05
                HHHHHHTTTEEEEEESSB--G CS
                xxxxxxxxxxxxxxxxxxxxx RF
        ThiF 35 knLalsGvgkltlvDnDkiel 55
                ++La+sGv  +tlv +D++e+
  KIR62063.1 37 RELAASGVTTVTLVEDDRVEY 57
                68******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 445.74
//
Query:       KIR62064.1  [L=286]
Description: nucleotidyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-10   41.1   0.0    4.6e-10   39.5   0.0    1.7  2  NTP_transferase  Nucleotidyl transferase
    1.9e-10   41.3   8.8    2.3e-10   41.1   7.9    1.6  1  NTP_transf_3     MobA-like NTP transferase domain
  ------ inclusion threshold ------
       0.02   14.6   0.0       0.03   14.1   0.0    1.3  1  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   7.8e-14   4.6e-10       2     114 ..      11     115 ..      10     123 .. 0.80
   2 ?   -1.3   0.0      0.22   1.3e+03     229     244 ..     204     219 ..     175     221 .. 0.77

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 7.8e-14
                      EEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEE..EEEEETTTHHHHHHHHTTSGGGTSEEEEEEES.S--BGGHHHHH CS
  NTP_transferase   2 avILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieei..ivvltqehsflveeqlkegskfgvevlialep.egkgtAdAval 92 
                      av+La G+GtRL+PLt +l+k l pv++  +l++  l rla  g   +  + v   +  + v  ++++ ++++      +ep  + gtA+ va 
       KIR62064.1  11 AVVLAAGEGTRLRPLTERLPKALCPVGNV-PLLDRALARLAGLGLAGParVAVNACYLGEQVVAHVGDRAHLS------VEPgAPLGTAGGVAN 97 
                      89***************************.***********96655541167777788899999999988766......444145599999999 PP

                      THHHHTTSSE..EEEEETTEEE CS
  NTP_transferase  93 aaelledeksdelvlvLggDhl 114
                       ++ ++ +     vlv ++D +
       KIR62064.1  98 LRDWIAGRG----VLVGNADAY 115
                      999988777....677777665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.22
                      EEEXSSHHHHHHHHHH CS
  NTP_transferase 229 WsDvGtldslleanek 244
                        D+Gt+ ++l an +
       KIR62064.1 204 FYDTGTPADYLAANLH 219
                      57*********99976 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   7.9   3.8e-14   2.3e-10       1     103 [.      11     121 ..      11     192 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 3.8e-14
                   EEEEEESS-TTTT...T..THHHHCCCCCCHHHHHHHHHCTT.-C...EEEEECSH..CHHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHHHH.SSS CS
  NTP_transf_3   1 aviLAGGrSsRmg...g..dKallplggkpllervldalraagvd...evvvvggd..eevlaalarlgvrvvededpgkgplaslaaalraaadad 87 
                   av+LA+G+++R+    +  +Kal p+g+ pll+r+l++l+ +g++   +v v++++  e+v a++ + ++++ +++ +  g+++++a   +++    
    KIR62064.1  11 AVVLAAGEGTRLRpltErlPKALCPVGNVPLLDRALARLAGLGLAgpaRVAVNACYlgEQVVAHV-GDRAHLSVEPGAPLGTAGGVANLRDWI-AGR 105
                   79**********7554259**********************964233388888888877888776.5689999999999*************9.79* PP

                   CEEEEETT-TT--HHH CS
  NTP_transf_3  88 avlvlacDmPlltpel 103
                   +vlv  +D  l +p++
    KIR62064.1 106 GVLVGNADAYLADPAA 121
                   *********9999875 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.9e-06      0.03       1      41 [.       9      52 ..       9      79 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.9e-06
                EEEEEECTTSSCTT-...SSS-GGGSEETTEEHHHHHHHHHHCT CS
        IspD  1 vvvvipAAGsGkRmk...aglpKqflelkgqtllehtvdallas 41
                v++v+ AAG+G+R++   + lpK++  + + +ll ++++ l++ 
  KIR62064.1  9 VCAVVLAAGEGTRLRpltERLPKALCPVGNVPLLDRALARLAGL 52
                79***********75333889*****************988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2213.98
//
Query:       KIR62065.1  [L=585]
Description: endonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-32  112.6   0.0    4.1e-32  112.0   0.0    1.3  1  RNase_T   Exonuclease
    3.4e-05   23.9   0.0     0.0041   17.1   0.0    2.2  2  DUF5051   3' exoribonuclease, RNase T-like
    4.9e-05   23.5   0.0    8.7e-05   22.7   0.0    1.3  1  GIY-YIG   GIY-YIG catalytic domain
     0.0022   17.6   1.8       0.17   11.7   0.4    2.6  2  UVR       UvrB/uvrC motif


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.0   9.1e-36   4.1e-32       1     165 []      34     191 ..      34     191 .. 0.96

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 9.1e-36
                 EEEEEEESSSTTCTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETTTCEEEESS CS
     RNase_T   1 vviDlEttgldakekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahnaafdvgfl 99 
                 vv+DlEttg  +     i+ei+a++++gge  +     ++v+p  +  +++++t +tgitq+ml +ap +++vl+ f e++  +a+lvahna +dvgfl
  KIR62065.1  34 VVVDLETTGGAP-DGGGITEIGAVKVRGGE--ELGVLATLVNPGVP--IPPFITVLTGITQAMLIPAPPIEQVLPSFLEFVA-DAVLVAHNAPYDVGFL 126
                 89**********.7****************..8999**********..**********************************.**************** PP

                 HHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHC..HHHHHHHHHTTCHSSSSTSSHHHHHHHHHHHH CS
     RNase_T 100 raadkrilkkevpkrnqfldtlildkatlkelar..tsldklaeklgleedgraHrAldDaeataklf 165
                 +aa+ r++++ +p  + +ldt+ l++++l++     ++l  l ++++  +  + HrAldDa+at+ ++
  KIR62065.1 127 KAACARHGYR-WP-NPRVLDTAALARRVLSRDEVpnRKLGTLSAYFRTATRPT-HRALDDAKATVDVL 191
                 *******888.99.999**********998777777**************998.**********9875 PP

>> DUF5051  3' exoribonuclease, RNase T-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0069        31       2      26 ..      33      58 ..      32      72 .. 0.85
   2 !   17.1   0.0     9e-07    0.0041      72     162 ..      95     191 ..      85     195 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0069
     DUF5051  2 klmiDiEtlgne.etaelvsIGaVff 26
                 +++D+Et+g    +  +++IGaV +
  KIR62065.1 33 FVVVDLETTGGApDGGGITEIGAVKV 58
                5789******998999********77 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 9e-07
     DUF5051  72 akslkdalqaleeFlekslkvwangasfDlviLraafellipwkywndrdvrtlvala........pelekgeekkreipfe...gvkHnALaDAkhqa 159
                 a++++++l  + eF++ +  ++a++a +D+  L+aa  +   +++ n r ++t    +        p+    +  + ++ f+      H AL+DAk+ +
  KIR62065.1  95 APPIEQVLPSFLEFVA-DAVLVAHNAPYDVGFLKAACARH-GYRWPNPRVLDTAALARrvlsrdevPN---RKLGTLSAYFRtatRPTHRALDDAKATV 188
                 67889999*******5.788****************8885.556666666666655553344433422...11122222222555789********998 PP

     DUF5051 160 kav 162
                  ++
  KIR62065.1 189 DVL 191
                 776 PP

>> GIY-YIG  GIY-YIG catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.9e-08   8.7e-05       3      78 .]     235     309 ..     233     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.9e-08
                 EEEEEEETTT--EEEEEESSHHHHHHHHHHHHHHT--S-HS.STEEEEEEEE----HHHHHHHHHHHHHHTTSSSS CS
     GIY-YIG   3 gvYiirskenkliYvGstknlekRlkqHnagkkakytrkkgkkpfeliileifptksealelEkklikkyksnkyn 78 
                 gvYi+r  ++  +YvG++ ++ +R ++++  ++++++   +    e +   ++    ea  +E +li  + +  yn
  KIR62065.1 235 GVYIFRAADDRPLYVGTSGDIATRVRSYFTAAEKRARMSEMLAAAERVEAVECAHSLEAEVRELRLIGAHAP-PYN 309
                 9*******************************99999888888999999999999999999******99999.887 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.4   3.7e-05      0.17      14      32 ..     434     452 ..     424     455 .. 0.91
   2 !    4.5   0.0    0.0068        31      23      35 ..     562     574 ..     561     575 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.7e-05
         UVR  14 AaenedFEkAAklRDqina 32 
                 +a+++++E+AA +R +++a
  KIR62065.1 434 LAADQRYEEAAVVRSRLAA 452
                 699***********99987 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0068
         UVR  23 AAklRDqinalkk 35 
                 AA++RD +++++ 
  KIR62065.1 562 AARFRDLLSKIES 574
                 9*********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4437.95
//
Query:       KIR62066.1  [L=581]
Description: diguanylate cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-66  224.1   0.0    5.4e-66  222.5   0.0    1.8  2  EAL       EAL domain
    9.7e-41  139.2   0.0    2.2e-40  138.1   0.0    1.6  1  GGDEF     Diguanylate cyclase, GGDEF domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.32   2.9e+03     199     218 ..      53      72 ..      51      77 .. 0.83
   2 !  222.5   0.0     6e-70   5.4e-66       3     238 .]     328     568 ..     326     568 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.32
                 HHHCCCT-EEEE-S--SHHH CS
         EAL 199 alakelgikvvaegVeteeq 218
                 ++ ++ g+++va ++ + e 
  KIR62066.1  53 RVGHQVGAELVAAHIASAEG 72 
                 67899999999999999885 PP

  == domain 2  score: 222.5 bits;  conditional E-value: 6e-70
                 HHHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEE.EEE--CHHCC-C CS
         EAL   3 alrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadikl.sinlspaslade 100
                 a+  al+++e++l yQP  +l++g+v+g+eal+rw+hp++g + p++f++lae++gl+  l +wvl +a++++++++ ++ a  ++ s+nl  ++++++
  KIR62066.1 328 AIPAALDRGEFHLDYQPLTSLRDGRVLGVEALVRWRHPELGKLYPGSFIELAEETGLIVPLGSWVLAEACREAASWS-SFGAAAPFvSVNLAVRQVHRP 425
                 7889************************************************************************6.457778888************ PP

                 CHHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHH......TTTTTSCHHHHH CS
         EAL 101 efleelrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrsll......adleedeeaqal 193
                 ++++e+r++l+++g++p+rL le+tes++++  e+   ++l+ L+++G+ria+ddfgtgy +l+yl++lp+  +K+ ++++      ad + ++ +  +
  KIR62066.1 426 GLVREVRDVLERTGLPPERLQLEVTESTMMSAVEEPV-RALRVLADMGVRIAIDDFGTGYCNLAYLRDLPVAELKVAGEFVaglrapADDPASRTDERI 523
                 ***************************9998888888.9******************************************666655555699999*** PP

                 HHHCHHHHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 194 vkalialakelgikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 +++l++la++l+++v aegVete q+++lr++gcd +QG++++kp
  KIR62066.1 524 LASLVSLAHALDLTVTAEGVETEGQADRLRAIGCDAAQGWHFGKP 568
                 ********************************************9 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.1   0.0   2.4e-44   2.2e-40       1     159 [.     151     305 ..     151     307 .. 0.97

  Alignments for each domain:
  == domain 1  score: 138.1 bits;  conditional E-value: 2.4e-44
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 a+hD+lT+LpNR+l++e+l+ ++++  r   +++v +ldld+Fk +nd++Gh+vGD +L +va+rL+++l  ++lvaRlggdeF+il+++t   +++++
  KIR62066.1 151 ATHDPLTDLPNRTLFTERLAAAIDSPGRGADRVGVCFLDLDRFKVVNDSLGHQVGDMLLVSVADRLRRALG-EHLVARLGGDEFVILVERTA--GTDDV 246
                 68************************8889***************************************97.58******************..67*** PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTS CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagr 159
                  ++++++la+++ep  ++g+el+v++siGi+   p  g+++ +l+++Ad  l  aK++g 
  KIR62066.1 247 VKVAETALAAVSEPALVDGHELTVSASIGIVER-PVAGTTPVDLMRAADATLHWAKADGG 305
                 *********************************.6*********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.22s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4058.22
//
Query:       KIR62067.1  [L=602]
Description: long-chain fatty acid--CoA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-99  331.9   0.1    5.3e-99  331.7   0.1    1.1  1  AMP-binding    AMP-binding enzyme
     0.0031   18.5   2.2      0.024   15.6   0.3    2.7  2  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.7   0.1    6e-103   5.3e-99       3     422 ..      24     470 ..      22     471 .. 0.87

  Alignments for each domain:
  == domain 1  score: 331.7 bits;  conditional E-value: 6e-103
                  HHHHHSTTSEEEEE.....CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTE CS
  AMP-binding   3 eqaaktpdkvalvd.....sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledsea 95 
                  ++a++ p++v + +       ++  +T+r+++++v ++A+gL ++Gv +gdrV++++++++ew++ ++ai+ aGav+vp++ t++ae+ a+il+ds+a
   KIR62067.1  24 DNAETAPEAVQFARpaaapASGWVEVTCRQFRDEVVAVARGLVAAGVSPGDRVGLMSRTRYEWTLFDYAIWAAGAVTVPIYETSSAEQAAWILADSGA 121
                  6777888888776678888668*********************99***************************************************** PP

                  SEEEETCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH CS
  AMP-binding  96 kvliatvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk 192
                   + +  v++++ +  ++ ++++l++ ++ ++++ +++++   + ++ ++ e +   ++   +k+dd+a+iiYTSGTTG+PKG++l+hrn+ a +a++ 
   KIR62067.1 122 VAAV--VETTAhATLVEGVRDRLPELAHLWQIELGAVDELVAAGASVDPVEID---RRRTGVKADDVATIIYTSGTTGRPKGCVLTHRNMYADIANAV 214
                  ****..88888888899999999999999999999988775555554444433...34457***********************************86 PP

                  ..HHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHC....... CS
  AMP-binding 193 ..letrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sgalkaakkak....... 280
                    l++ f l+++   l +lplah+f+  l  ++++ + at+  +  +   +   l++ ++++++t++ +vPrv+e++ + ++++++  +         
   KIR62067.1 215 pvLPNLF-LRPGASTLLFLPLAHAFAR-LIQIGVVQARATMAHCADTR--N---LVAELQAFRPTFVLSVPRVFEKVYNgARQKAE-AD-Gkgrifdr 303
                  7444334.679***************6.********999998877443..3...6899*******************884443332.12.13457777 PP

                  .......................................CGTT.-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS CS
  AMP-binding 281 .......................................dlss.lrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgs 338
                                                          l++  r +++gg+pl + l +ffr ++ + + egYGlTEt+++++ ++l++  +k+g+
   KIR62067.1 304 aeqvavaysealespggpgvalrvqhavfdklvyrklraALGGrCRDAISGGAPLGARLGHFFRGIGVT-ICEGYGLTETSPAAA-ANLPDA-TKIGT 398
                  7778888888899999999988888888888888888887777788899*****************886.**************9.775555.89*** PP

                  -BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 339 vGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                  vG+plpgv ++i+D+           Ge+l++g  +++gY++++eataea+   ++w+rTGDlg ld+dG l i+gRkk++i++
   KIR62067.1 399 VGRPLPGVTIRIADD-----------GEILISGDLIFQGYWRNEEATAEALS-ADGWFRTGDLGQLDADGFLSITGRKKEIIVT 470
                  **************8...........9************************7.657**************************86 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.066   5.9e+02      29      61 ..     121     149 ..     109     161 .. 0.74
   2 !   15.6   0.3   2.7e-06     0.024       2      52 ..     481     521 ..     480     569 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.066
                    -EEEEEE------HHHHHHHHHHHHT-TTTS-S CS
  AMP-binding_C  29 lvafVvlkdgsealeeeLkahvrkelgpyavpk 61 
                    +va Vv  + +    ++L++ vr++l+++a   
     KIR62067.1 121 AVAAVVETTAH----ATLVEGVRDRLPELAHLW 149
                    57777763233....9***********998654 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2.7e-06
                    HHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHH CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrk 52 
                    +E  + +hp +++++VvG++ +    +++a+V+   ++    e+L +++++
     KIR62067.1 481 LEDQVRAHPLISQCVVVGDRQP----FIAALVTI--DE----EALPKWLAA 521
                    589999****************....9******9..43....444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4109.17
//
Query:       KIR62068.1  [L=231]
Description: hypothetical protein TK50_23525 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1602.61
//
Query:       KIR62069.1  [L=228]
Description: endonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-06   27.0   3.2    6.2e-06   25.9   3.2    1.5  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   3.2   3.4e-10   6.2e-06       1     233 []       6     215 ..       6     215 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3.4e-10
                    EEEEESTGCHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH........................................TTC CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................xxx RF
  Exo_endo_phos   1 ltwNvngqaspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllal........................................ggf 56 
                    +++Nv +q         + ++la++++a  +Dv+ +QE+  + ++r++ ++++                                        ++ 
     KIR62069.1   6 VSYNVHSQRD-------DQAALAAVVRAVAPDVVIVQEAPRRFRWRQKCASLAesfglvvavgglpslgnllltslrvrvadtrcqrypltpgRHM 94 
                    59*****933.......4777******************************999988777766666665555555555555544444444444333 PP

                    EEEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEECCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  57 lgasstsptgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlniashrdhdlvrdlqllalllqvealnadrgapvivaGD 152
                    +ga        + + + gga   rf l                                    +h + + +++ a+  +++   a+ + pv+   D
     KIR62069.1  95 RGA-------AYADCRVGGA---RFLLA----------------------------------GSHLSTDPAERPAQAAAFKGELAAADLPVVAGAD 146
                    333.......3334444443...44443..................................448888899999999999999999999999999* PP

                    -SSSTSGGGBSCGHHHHHHCTTTHH......SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    xxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 153 fNarpsdddsrvlrtrglalapapv......glyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrrealtlSDH 233
                    +N     +d + ++t         v      +++   +  + ty    ++ r+D +++ p+ ++++  v++ p+a+       +SDH
     KIR62069.1 147 LNE---GPDGPAWAT---------VgagltdAAVAADRADRLTYSCADPRRRIDAVFVDPRITVVDYDVVDTPQAR------LASDH 215
                    ***...222222222.........1444556789999*************************************66......56**9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1843.41
//
Query:       KIR62070.1  [L=264]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-17   62.8  26.7    7.9e-17   62.6  26.7    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    2.8e-13   49.7   1.2    3.2e-12   46.2   1.2    2.0  1  Hydrolase_4    Serine aminopeptidase, S33
    7.5e-12   45.4   0.5    1.6e-09   37.8   0.5    2.1  1  Abhydrolase_1  alpha/beta hydrolase fold
     0.0029   17.5   0.1        0.2   11.5   0.1    2.3  2  Ser_hydrolase  Serine hydrolase
     0.0085   16.2   0.0      0.024   14.7   0.0    1.7  2  Abhydrolase_4  TAP-like protein


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6  26.7   2.2e-20   7.9e-17       1     212 [.      31     243 ..      31     256 .. 0.63

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 2.2e-20
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--H.HHC.HHHHHHHCCTT..TTSEEEEEETCHHHHHHH.HHHCC..EEEEE CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldl.edl.adlaalldelaagggpvvlvGHSlGGalala.aaplalvvgvll 93 
                    +l+++G+g++a++++   L  ++++g+  +a++l+GhG+s+p+p +  +++ +d+ +++++l   ++++vlvGH  G++++ + +a+++ +++vl 
     KIR62070.1  31 LLFVPGFGHGAWAFAEHWLGHAAGRGFPAYALSLRGHGGSEPAPEATlRAYtHDVTQVAAGL---PRQAVLVGHGAGALVVRHaLARYPARAAVLA 123
                    79*******99998333555555555999********7787777555044324445555555...8999**************5555556566999 PP

                    S-..----TTT..S----TTHHHHHHTT-CCCCHCCH..S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHC.HTTCCHHTT-TTGCEEEC.TT-CHH CS
  Abhydrolase_6  94 dppptalpagl..laaalelllallallrllawlsre..plprlfladedadaawrarlarlaallaglg.llpaaawadlpvpllvlg.geDplv 183
                    +p   +l++    + a+++ + + l++++ ++++  +  +++r++ + e+  ++++ar  ++ + + +   +++ ++ a   +p+lv+g  +D++v
     KIR62070.1 124 AP---VLGDWAtlGTALRRNPGGTLPAFVGAGLRLSRrqLFSRELPDAEA--RRYAARIGHAGRRAQWQLlTHRDPEPAVGDPPVLVVGsPDDRVV 214
                    99...666666665555555555555555544443111234445555444..77777777777666655533333333333333355565888866 PP

                    H.HCHHCCCHSTTEEETCE...SSS-HHHH CS
  Abhydrolase_6 184 p.rllerllaqagarlpvvlpgaGHlphle 212
                    p + l r+++ ++ + p ++pg GH ++l+
     KIR62070.1 215 PpAALTRAAR-RHGGAPLLFPGMGHDLMLD 243
                    6244666666.88888899******88884 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   1.2     9e-16   3.2e-12       7     237 ..      31     243 ..      26     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 9e-16
  Hydrolase_4   7 vvlvHGlaehsgryae.laeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvag 103
                  +++v+G++  ++++ae    + a +Gf  yal  rGhG se++    + +  y+ D+ ++   +      ++ +l+Gh  G+l++ ++l+ryp+  ++
   KIR62070.1  31 LLFVPGFGHGAWAFAEhWLGHAAGRGFPAYALSLRGHGGSEPAPE--ATLRAYTHDVTQVAAGLP-----RQAVLVGHGAGALVVRHALARYPA--RA 119
                  7899********9998789999******************76665..99********99854443.....4589********************..** PP

  Hydrolase_4 104 lilsaPalkikaklkappllklllkllgkllpklqvsnnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrleeraakit....lPllll 197
                  ++l+aP+l+ +a      l  +l++  g +lp +          lsr + + +++ + +   ++  +r+++   +a+ +l+++ +        P+l++
   KIR62070.1 120 AVLAAPVLGDWAT-----LGTALRRNPGGTLPAFVG----AGLRLSRRQLFSRELPDAEA--RRYAARIGHAGRRAQWQLLTHRDPEPavgdPPVLVV 206
                  *********9955.....344456666777777666....45567777777776655554..44555555555555555554443333334589**** PP

  Hydrolase_4 198 hGeaDkvvdpeasrelyerlgskdktlklypglyHellnE 237
                   + +D+vv+p+a  ++++r g       l+pg+ H+l+ +
   KIR62070.1 207 GSPDDRVVPPAALTRAARRHG---GAPLLFPGMGHDLMLD 243
                  **********99988888888...6999*********987 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.5   4.6e-13   1.6e-09       1     123 [.      29     140 ..      29     243 .. 0.77

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 4.6e-13
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeype 96 
                    p+l++++G++ +++ +ae+ l+ a  + gf  ++l lrG+g S+pap+      ++ ++  d+ ++ + l+ + + lvGh  G +++++++a+yp 
     KIR62070.1  29 PPLLFVPGFGHGAWAFAEHWLGHAAGR-GFPAYALSLRGHGGSEPAPEA-----TLRAYTHDVTQVAAGLPRQAV-LVGHGAGALVVRHALARYPA 117
                    89****************999977776.*******************94.....333355555565555555555.*******************9 PP

                    GEEEEEEESECSSCCHHHHHHHHHHHH CS
  Abhydrolase_1  97 rVkalvllgaidpaaslieaqrqqaks 123
                      +a vl ++     ++  +    + +
     KIR62070.1 118 --RAAVLAAP--VLGDWATLGTALRRN 140
                    ..89999999..444444443333444 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   5.7e-05       0.2      35      89 ..      74     125 ..      31     141 .. 0.68
   2 ?    3.9   0.0     0.012        42     116     152 ..     202     238 ..     170     246 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.7e-05
                    TS--HHHHHHHHHHHHHC-STTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET- CS
  Ser_hydrolase  35 lkPdledWvaaleaaveaaeekvvlvAHSlgclavlhaaelqlakkvagalLVap 89 
                     +++l   ++ + + ++ +++++vlv H  g+l+v ha+   ++ + ++a+L ap
     KIR62070.1  74 PEATLRAYTHDVTQVAAGLPRQAVLVGHGAGALVVRHAL---ARYPARAAVLAAP 125
                    5667889999999999*********************99...5555666677666 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.012
                    HCEEEEETTBTTC-HHHHHHHHHHCT-EEEEETT-TT CS
  Ser_hydrolase 116 pslvvaSenDpyvsfeeaeelaeawgaelvdlgeaGH 152
                    p lvv S +D +v+ ++  + a++ g +    +  GH
     KIR62070.1 202 PVLVVGSPDDRVVPPAALTRAARRHGGAPLLFPGMGH 238
                    459********************99988888888888 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.5     9e+03      64      76 ..      30      42 ..      14      45 .. 0.67
   2 !   14.7   0.0   6.8e-06     0.024      26      75 ..     192     240 ..     175     250 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.5
  Abhydrolase_4 64 vlvtvegeGHgal 76
                    l+ v g GHga+
     KIR62070.1 30 PLLFVPGFGHGAW 42
                   4566667777765 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 6.8e-06
  Abhydrolase_4  26 rdestakgaapvLllqnerDpaTPyegakklakalggavlvtvegeGHga 75 
                    rd ++a g++pvL++++  D ++P++  +++a++ gga l+   g GH+ 
     KIR62070.1 192 RDPEPAVGDPPVLVVGSPDDRVVPPAALTRAARRHGGAPLL-FPGMGHDL 240
                    344456679***************************87776.46777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1914.97
//
Query:       KIR62071.1  [L=472]
Description: trehalose-phosphate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.4e-141  470.1   0.0   8.6e-141  469.8   0.0    1.0  1  Glyco_transf_20  Glycosyltransferase family 20
      0.003   17.1   0.0       0.25   10.9   0.0    2.4  2  Glycos_transf_1  Glycosyl transferases group 1
     0.0072   16.6   6.3       0.34   11.2   0.2    3.2  3  GGDEF_2          GGDEF-like domain
  ------ inclusion threshold ------
       0.72   10.4   5.6        1.2    9.6   0.2    3.4  3  TetR_C_28        Tetracyclin repressor-like, C-terminal domai


Domain annotation for each model (and alignments):
>> Glyco_transf_20  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  469.8   0.0  1.9e-144  8.6e-141       2     473 ..       5     459 ..       4     460 .. 0.97

  Alignments for each domain:
  == domain 1  score: 469.8 bits;  conditional E-value: 1.9e-144
                      -EEEEEEE-SECEEE-S.SCG..EEECCGSSHHHHHCCCHHCCC-EEEEEEECCES-CCC..HCCCCHHHCCCCCEEEEEE-HHHHHHHCCCHH CS
  Glyco_transf_20   2 klvvvsnrlplklereseeekeeyelkkssgglvsalkglkeetevvwvgwlgvevdeseeakekvskeleekfsvvpvflsdekveeyyngfs 95 
                      +lvvv+nrlp++ +    ++    e+ +s+gglvsal++l ++t  +wvgw+g + ++ +    ++       + + +v ls e++  +y+gf+
       KIR62071.1   5 SLVVVANRLPIDDSVAP-DGA--CEWRRSPGGLVSALHPLLRHTPATWVGWAGGTGPAPS--LPDI-----GSVRMRTVPLSGEDFRDHYEGFA 88 
                      689*******9976666.666..8999**************************9999888..4444.....3677889**************** PP

                      HHCHHHHHTT-GG....G----HHHHHHHHHHHHHHHHHHHCC--TT-EEEEESGGGTTHHHHHHHCCTTSEEEEEE-S----HHHHTTSTTHH CS
  Glyco_transf_20  96 ksvLWpllHYklpdsseekefersawdaYvkvnklFAdkiveeikdgdliwvhDYhLmllPellRkkledakigfflHiPFPsseifriLpvre 189
                      +s+LWpl+H    d  e+ e++r++w+aY++vn++FA++ +e +++g+++wv+DYhL l+P llR+  +d++igfflH+PFP+ e+f+ Lp+r+
       KIR62071.1  89 NSTLWPLYH----DAVEQPEYHRRWWEAYQRVNQRFAEATAEAAEQGAVVWVQDYHLQLVPGLLRELRPDLRIGFFLHVPFPPPELFMQLPRRA 178
                      *********....7888***************************************************************************** PP

                      HHHHHHTTSSEEEESSHHHHHHHHHHHHHHSSEEEECTTEEEEETTEEEEEEE------HHHHHHHCCSCHHHHHHHHHHHHT.TTSEEEEEEE CS
  Glyco_transf_20 190 eilegllgadliGFhtedyarhFlsccsrllgleveskrggveykgrkvsvkalpigidverlesalkkesvsekvkelkerfenkkklilgvD 283
                      e+l+g+lgadliGF+  + a++F + + ++l+l ++ +   + +++r v+++a+p++id++++++ +++++v  ++++l++++++  ++il+vD
       KIR62071.1 179 ELLRGMLGADLIGFQRAQAAHNFAQLVAKVLELPATDR--RIGVGDRVVRIGAFPVSIDTAEMAALAARPDVVARAQRLRHDLGDPDHVILSVD 270
                      ***********************************999..689*************************************************** PP

                      EC-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEEEEB-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEEES---HHHHHHHHHH-SEEE CS
  Glyco_transf_20 284 rlDyikGvkqkllaferfLeeypelrgkvvlvqiavpsredveeyqelekeveelvgrINgefgtldytPvvylersldfeeliallaaadvll 377
                      r+Dy+kG++q+l+a++++L+    +  ++vlvq+avpsre+v +yq l+  ve+ vgrINgefg+++   ++yl++++d++el+al+++adv+ 
       KIR62071.1 271 RMDYTKGIEQRLKAYSELLASGHVKVRDTVLVQVAVPSRERVTQYQILRDRVEREVGRINGEFGRVGEPAIHYLTQPFDRAELAALYRVADVMA 364
                      ********************************************************************************************** PP

                      E--SSBSS-CHHHHHHHCSTTT--EEEEETTBGGGGT-TTTSEEE-TT-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHT-HHHHHHHHHHH CS
  Glyco_transf_20 378 vtslRdGmnlvakeyvvcqqekkgvLiLSeFaGaaqsLkdaailvNPwdieevaeaikeaLkmseeerkkrekkllkqvskhdvqsWaesflse 471
                      vt+lRdGmnlvakeyv+++ +++g+L+LSeFaG+a++L + a lvNP+d+e +++ + +aL+ +++    r++ + +++ ++d+  Wa+s+ls 
       KIR62071.1 365 VTPLRDGMNLVAKEYVAARVDDTGSLLLSEFAGSAAELPQ-AHLVNPHDLEGLKQGLLSALEADPADVTPRMRAMREHLHRNDIRAWARSYLSA 457
                      ***************************************5.6*************************************************998 PP

                      HH CS
  Glyco_transf_20 472 lk 473
                      l 
       KIR62071.1 458 LD 459
                      85 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   5.6e-05      0.25       9      43 ..     257     291 ..     250     305 .. 0.82
   2 ?    3.5   0.0     0.011        47      81     116 ..     348     383 ..     338     384 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.6e-05
                      TTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCC CS
  Glycos_transf_1   9 lgknekkkiilsvgrlekeKgvdllikafallkkq 43 
                      + + + + +ilsv r++++Kg+++ +ka+ +l + 
       KIR62071.1 257 HDLGDPDHVILSVDRMDYTKGIEQRLKAYSELLAS 291
                      55667899**********************99876 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.011
                      CHSSSHHHHHHCESEEEEEESSBSS-HHHHHHHHTT CS
  Glycos_transf_1  81 vsredleellknadifvlpsisEgfGivllEAmaag 116
                       +r +l +l++ ad+++++  ++g+ +v+ E+ aa+
       KIR62071.1 348 FDRAELAALYRVADVMAVTPLRDGMNLVAKEYVAAR 383
                      45789**************************99986 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.8   8.1e+03      61      66 ..     132     137 ..     103     159 .. 0.50
   2 !   11.2   0.2   7.6e-05      0.34      53     114 ..     181     241 ..     169     243 .. 0.82
   3 !    7.0   0.9    0.0015       6.6       5      78 ..     245     319 ..     241     340 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.8
     GGDEF_2  61 lvlllp 66 
                  v++++
  KIR62071.1 132 AVVWVQ 137
                 222222 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 7.6e-05
     GGDEF_2  53 lvavrgdrlvlllpaedeedaeallerlarrlgglsvriGiGspveglaglrrSyreArrAl 114
                 l ++ g  l+ + +a+++ + ++l++++++  ++ + riG+G+ v ++  ++ S   A+ A+
  KIR62071.1 181 LRGMLGADLIGFQRAQAAHNFAQLVAKVLELPAT-DRRIGVGDRVVRIGAFPVSIDTAEMAA 241
                 5566666777777777777777999999988888.***********************9986 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0015
     GGDEF_2   5 deellerarrlgldldgp.yvvvvieleedaerllraleealralgpdalvavrgdrlv.lllpaedeedaealle 78 
                 ++++++ra+rl +dl  p +v++ ++  + +  + ++l+++ + l  +  v vr+  lv + +p++++ +  ++l+
  KIR62071.1 245 RPDVVARAQRLRHDLGDPdHVILSVDRMDYTKGIEQRLKAYSELL-ASGHVKVRDTVLVqVAVPSRERVTQYQILR 319
                 45999************99**999998778888888888888877.455555555544424455555544444443 PP

>> TetR_C_28  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2   0.00027       1.2      18      61 ..      90     134 ..      77     136 .. 0.82
   2 ?   -0.5   0.1      0.38   1.7e+03      22      40 ..     237     255 ..     231     265 .. 0.75
   3 ?    0.8   0.1      0.15   6.9e+02      19      48 ..     416     445 ..     400     461 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00027
                 HHHHHHHHHGGGSHHHHHHHHHHHHHHS--TTGG-HH.HHHHHHH CS
   TetR_C_28  18 allaallaalaedpellepwrewyrrwlerleadgld.pvlatlv 61 
                 ++l+ l   ++e+pe+ ++w e y+r  +r+++ + + +++  +v
  KIR62071.1  90 STLWPLYHDAVEQPEYHRRWWEAYQRVNQRFAEATAEaAEQGAVV 134
                 56788889999********************98866646666666 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.38
                 HHHHHGGGSHHHHHHHHHH CS
   TetR_C_28  22 allaalaedpellepwrew 40 
                 a +aala+ p++ ++ ++ 
  KIR62071.1 237 AEMAALAARPDVVARAQRL 255
                 6688999999998887765 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.15
                 HHHHHHHHGGGSHHHHHHHHHHHHHHS--T CS
   TetR_C_28  19 llaallaalaedpellepwrewyrrwlerl 48 
                 l ++ll al +dp+   p  + +r++l+r 
  KIR62071.1 416 LKQGLLSALEADPADVTPRMRAMREHLHRN 445
                 567899999999998888888888877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3125.30
//
Query:       KIR62072.1  [L=1098]
Description: guanylate cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-26   93.1   0.0    2.3e-26   92.5   0.0    1.3  1  Guanylate_cyc  Adenylate and Guanylate cyclase catalytic doma
    1.8e-17   64.2   0.1    1.8e-17   64.2   0.1    3.3  3  AAA_16         AAA ATPase domain
     0.0019   18.5   0.0      0.016   15.5   0.0    2.4  1  AAA_22         AAA domain
     0.0036   16.8   3.9       0.11   11.9   0.4    2.4  2  SNAP           Soluble NSF attachment protein, SNAP
  ------ inclusion threshold ------
      0.024   14.6   0.0      0.035   14.0   0.0    1.2  1  ATPase_2       ATPase domain predominantly from Archaea
       0.14   11.3   0.0       0.27   10.3   0.0    1.4  1  DUF815         Protein of unknown function (DUF815)
       0.19   11.6   0.0       0.35   10.8   0.0    1.3  1  RsgA_GTPase    RsgA GTPase
       0.23   10.6   0.0       0.42    9.7   0.0    1.4  1  NB-ARC         NB-ARC domain
       0.28   10.9   0.0       0.28   10.9   0.0    3.5  5  AAA_30         AAA domain


Domain annotation for each model (and alignments):
>> Guanylate_cyc  Adenylate and Guanylate cyclase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.0   1.2e-29   2.3e-26       4     181 ..       3     180 ..       1     182 [. 0.93

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 1.2e-29
  Guanylate_cyc   4 esydevtilFadIvgftalssahspievvklLnelyarfdelldekkvykvktiGdaymvvsglpeekaahaaklaelaLdmlealeevaveskeg 99 
                    e  ++v++lF+dIv+ft+++++ +p++  +l + ++a +++l++++++   k+iGda m+++g+p +  ++a ++++ +L++  +l    +  ++ 
     KIR62072.1   3 EDRRQVSVLFIDIVDFTTYAERADPEQARNLQQAYFATVRRLVHQYGGVVEKFIGDAVMALFGAPVATDNDALRCVRAGLELQRNLARQPAGPHPP 98 
                    56689*********************************************************************************55555556** PP

  Guanylate_cyc 100 lkvrvGihtGpvvagviGakk.prydvwGntvnlAsrmestgkagkiqvseetyellkeeqfeltergevevkGkgkletyfl 181
                    l  rvGi tG+ ++ +  a+   +  v G+ vn+Asr++s++ +g + v e+t +  + +++e+ +r +v ++G++ +  ++l
     KIR62072.1  99 LGFRVGIATGEALVDLSAARDgGQGFVTGDVVNTASRLQSLAPSGGVVVDESTWAATR-HDMEYADRPPVTLRGRSAVSRIWL 180
                    ****************985541567799**************************9999.9***************99999887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.1   9.2e-21   1.8e-17       3     169 ..     199     379 ..     197     380 .. 0.72
   2 ?   -2.2   0.1       2.4   4.8e+03     106     132 ..     649     716 ..     582     726 .. 0.48
   3 ?    1.1   0.3      0.24   4.7e+02      64     127 ..     970    1082 ..     930    1091 .. 0.44

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 9.2e-21
      AAA_16   3 vGReeeleqLlsalervrsgrp.elvllsGesGvGKsslvrellralekd...ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleaw 97 
                 v Re+e+  L +al+r+ + r+ +lv + G +GvGKs+l+rel+r++       + +l g+c  ++++++y+ala++ +    +  ++d+   a+l++ 
  KIR62072.1 199 VNREHERGLLVNALHRTVTERTsQLVTVFGSAGVGKSRLLRELARHAASLpgpPITWLVGQCPPFGENVTYAALADIVKGWVGVSNVDDP---AALGDR 294
                 77*************99999999*********************9555446434666**************8888888443333333333...233333 PP

      AAA_16  98 rekleeala............avpelagaea..........srllellkrll.allsrderplvlvlDdlqwadeaslqllaaLlrlleskpllv 169
                  ++ +++l+            +                         ++r+l al++  + p+vlv++d++wad+a l++ ++L +++   pllv
  KIR62072.1 295 LRQRLARLGdphavrladplgP--------LiglpgerltpGETETSWRRFLlALAA--AGPTVLVFEDMHWADQAMLAFVEQLGAAARGVPLLV 379
                 3333344445665665555552........033444444667888888889945555..578********************9999877448887 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.4
      AAA_16 106 a....................................avpelagaea....srllellkrll.allsr 132
                 a                                     ++elaga++     r + ll+ ++ +++ r
  KIR62072.1 649 AlpggpeptlelfdaelalfrdgdaflvdggaarlarLAGELAGAGEptgaARAWTLLATAAwRRADR 716
                 23333333333333333344444444444444422222222223222444466666666666555555 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.24
      AAA_16   64 esaipysalaqalareellrqllde............aesaeleawrekleeala.......................................... 106 
                  +++ip++ ++ a+   ++   l+ +            +                +                                          
  KIR62072.1  970 TREIPFAEWVPAI-G-HVAVVLGGDaarrvrrlltsaP----------------Rmtpwaraagqaaeaalagstgdaraaaelfrsaaeqyrrmgd 1048
                  4555555555555.3.3333333331222222221110................1222222222111122222222222223333333335556666 PP

      AAA_16  107 .............avpelagaeasrllellkrll 127 
                                 +e+++a+a ++l++++ ++
  KIR62072.1 1049 ltdhvlaaalsvpTLREVDPAGAAQVLAEVRGFA 1082
                  6666666666555555555555555555555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   7.9e-06     0.016       4     110 ..     220     363 ..     217     390 .. 0.52

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.9e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst...sskdllrellralglelka............................. 70 
                 t ++++v+G +G+GK++llr+l++ +    +   ++ + +  ++p  +   + + l+  +   +g+++ +                             
  KIR62072.1 220 TSQLVTVFGSAGVGKSRLLRELARHAA---SLPGPPITWLVGQCPPFGenvTYAALADIVKGWVGVSNVDdpaalgdrlrqrlarlgdphavrladplg 315
                 67899*******************983...233333333344444444433333333333333333333333333333333333333334445555555 PP

      AAA_22  71 ..........erlsseellealeqalraravielliiDEaqhlrseeale 110
                            ++++e  ++++  al a++   +l+ ++++    +++l 
  KIR62072.1 316 pliglpgerlTPGETETSWRRFLLALAAAGP-TVLVFEDMHWA-DQAMLA 363
                 5555555545555555555555555555555.56666666665.455555 PP

>> SNAP  Soluble NSF attachment protein, SNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.4   5.3e-05      0.11      68     177 ..     693     805 ..     676     817 .. 0.80
   2 !    5.4   0.2    0.0054        11      23     106 ..    1022    1045 ..    1004    1058 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.3e-05
                 TT-HHHHHHHHH.HHHHHHHHT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT..-HHHHHHHHHHHHH CS
        SNAP  68 lkekdeaanayv.eAakcykkvspeeAvealekAieiytekgrfrraAklkkeiaelyekelgdlekAieaYekAaelyeqee..akalankcllkvAe 163
                 ++e++ aa+a++  A+ + ++ + +e  ++l++Ai iyt+    ++ A+   e+a +   + +++e A++a ++Aa l e  +    +++  + l vA 
  KIR62072.1 693 AGEPTGAARAWTlLATAAWRRADRAETLRCLDRAIGIYTDLPDSEEKASALLELARVHMLN-AETEPACAAARTAAGLAERLQlrEVSASARITLAVAR 790
                 67777788887525999999*************************************9999.999******9***999887776344555677888885 PP

                 H.HHHTT-HHHHHHH CS
        SNAP 164 l.saelekyekAiei 177
                 + s   e+y++ +ei
  KIR62072.1 791 YlSGVPEAYAELVEI 805
                 426666677776666 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0054
                  HH--SHHHHHHHHHHHHHHHHHHHHTT-THHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH CS
        SNAP   23 lfgsksskaeeAadlyeqAAnayklakkweeAgeaflkaAecqeklkekdeaanayveAakcykkvspeeAvealekAieiyte 106 
                  l gs + +a  Aa+l+ +AA++y+                                                           +
  KIR62072.1 1022 LAGS-TGDARAAAELFRSAAEQYR-----------------------------------------------------------R 1045
                  2233.3366666666666666665...........................................................3 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.8e-05     0.035       3      42 ..     200     243 ..     198     248 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
    ATPase_2   3 dReke....lkeleeilerepneiyfiYGpegsGKtaLlkeiie 42 
                 +Re e    ++ l + + + +++ + ++G+ g+GK++Ll+e++ 
  KIR62072.1 200 NREHErgllVNALHRTVTERTSQLVTVFGSAGVGKSRLLRELAR 243
                 666665555799999999***********************976 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00014      0.27      21      77 ..     189     245 ..     176     248 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
      DUF815  21 evdevklddLvgidkqkealventeqfleglpannvLLwGarGtGKSslvkallney 77 
                 ++ + +l+ +v+ ++++  lv+  ++ ++ ++++ v ++G+ G+GKS l++ l +++
  KIR62072.1 189 DLTTAELTPMVNREHERGLLVNALHRTVTERTSQLVTVFGSAGVGKSRLLRELARHA 245
                 566778999999**************************************9998775 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00018      0.35      93     122 ..     212     244 ..     187     249 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
                  HHHHCTT...SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  93 lkellkd...ktsvlvGqSGvGKStLinallpe 122
                  l++ +++   +++++ G+ GvGKS L+ +l+ +
   KIR62072.1 212 LHRTVTErtsQLVTVFGSAGVGKSRLLRELARH 244
                  4444444112667788************99875 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00021      0.42      15      47 ..     216     248 ..     202     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00021
                 TTTSCSEEEEEEESTTSSHHHHHHHHCCSHCCC CS
      NB-ARC  15 kdelqslvvalvGmgGvGKttlakqilnksdev 47 
                   e  s +v++ G +GvGK+ l+++  ++ +++
  KIR62072.1 216 VTERTSQLVTVFGSAGVGKSRLLRELARHAASL 248
                 34555669*****************99986655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.77   1.5e+03      84     103 ..     137     156 ..     105     160 .. 0.75
   2 ?   10.9   0.0   0.00014      0.28      10      46 ..     213     250 ..     210     272 .. 0.84
   3 ?   -2.0   0.1       1.3   2.5e+03     146     186 ..     559     600 ..     550     613 .. 0.71
   4 ?   -1.8   0.1         1   2.1e+03      53      63 ..     815     825 ..     756     873 .. 0.55
   5 ?   -3.9   0.2       4.6   9.2e+03     163     177 ..    1018    1032 ..     994    1048 .. 0.51

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.77
      AAA_30  84 arlepgtllivDEagmvdtk 103
                 ++l+p+  ++vDE+  ++t+
  KIR62072.1 137 QSLAPSGGVVVDESTWAATR 156
                 45788899*****9999886 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00014
      AAA_30  10 vealltsgdrvavltGpAGtGKttalkalreaweaa.g 46 
                  +++++ + +++++ G AG GK+ +l++l++++++  g
  KIR62072.1 213 HRTVTERTSQLVTVFGSAGVGKSRLLRELARHAASLpG 250
                 56777888899******************998887755 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.3
      AAA_30 146 igtaeLtevvRqke.seeraaalalregdaeealealadrgr 186
                  +  +L    R ++ ++ ++  +++ +g++++ +e la++ +
  KIR62072.1 559 VCYQRLPRTERVARhQSTADWLEQVTDGRQQDLVEVLANHRW 600
                 556666666777444788888888888888877777777654 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1
      AAA_30  53 AptgkaAkvLa 63 
                 A+  +a ++La
  KIR62072.1 815 ASRRRAVHNLA 825
                 33333333222 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 4.6
      AAA_30  163 raaalalregdaeea 177 
                  ++aala ++gda++a
  KIR62072.1 1018 AEAALAGSTGDARAA 1032
                  233333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1098 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 6907.58
//
Query:       KIR62073.1  [L=342]
Description: 6-phosphofructokinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.2e-105  351.5   0.4   3.7e-105  351.3   0.4    1.0  1  PFK       Phosphofructokinase
     0.0051   16.1   0.1     0.0085   15.4   0.1    1.3  1  NRD1_2    NrpR regulatory domains NRD1 and 2


Domain annotation for each model (and alignments):
>> PFK  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.3   0.4  4.1e-109  3.7e-105       1     283 [.       2     296 ..       2     297 .. 0.96

  Alignments for each domain:
  == domain 1  score: 351.3 bits;  conditional E-value: 4.1e-109
                 EEEEEEESS--TTHHHHHHHHHHHHHHTT.-EEEEETTHHHHHHTT-EEEE-SGGGTT-TT--S-TT-----GGGGSHHHHHHHHHHHHHHT--EEEEE CS
         PFK   1 riailtsGGdapGmNaairavvrtaikkg.levygireGfeGlieeeiekltledvsgilsegGtiLgsaRskefkeregrkkaaenlkklgidaLvvi 98 
                 ri++lt GGd+pG+Na+iravvr +++ + +e +g+++G++G +e+  ++l+  +v+gil +gGtiLgs+R+++fk ++g+++++enl ++g+daL++i
  KIR62073.1   2 RIGVLTGGGDCPGLNAVIRAVVRKGVATYgHEFVGFQDGWKGPLEGLSKPLGIAEVRGILPRGGTILGSSRTNPFKIENGVERIKENLAAQGVDALIAI 100
                 7**********************9988776**********************************************999******************** PP

                 ESHHHHHHHHHHHHT..T....--EEEEEEETT---TT-S--EEHHHHHHHHHHHHHHHHHHHHHHT-EEEEEES-TT-THHHHHHHHHHT-SEEE-TT CS
         PFK  99 GGdgslkganklseerkglleelkivgiPkTidNDipgtdytiGfdTAlntiveaidklkstakshkrvfvvEvmGrncGwlAlmaglaggadvilipE 197
                 GG+++l +a kl+e   g    +++vg+PkTidND+  tdyt+GfdTA+n+++eaid+l++ta+sh+r+ vvEvmGr++Gw+Al+aglagga+vil+pE
  KIR62073.1 101 GGEDTLGVATKLHEL--G----VNVVGVPKTIDNDLGATDYTFGFDTAVNIAMEAIDRLHTTAESHHRTLVVEVMGRHAGWIALHAGLAGGANVILLPE 193
                 *************77..8....9**************************************************************************** PP

                 S---HHHHHHHHHHHHT.T-S-EEEEEESSS..S-.....................HHHHHHHHHHHHSS-EEEEE-GGGGG-S---HHHHHHHHHHHH CS
         PFK 198 epfdieeliekikklrkkgkkksiivvaEgakdkeg..................iiaeelakeieektgievrvtvlGhlqrGgspsafDrilatrlGi 278
                 ++fd+e+++  ++k+ + ++   i+vvaEga+  +g                  +i++ la+++e+ktg+e+r+ vlGh+qrGg+p+afDr+latrlG 
  KIR62073.1 194 RQFDVEQVAGYVEKRFQ-HQYAPIVVVAEGAQPLDGqmvlhnqeldafghvrlgGIGQWLAEQLEAKTGKEARTVVLGHIQRGGTPTAFDRVLATRLGL 291
                 ****************6.45566*********5455668899999****************************************************** PP

                 HHHHH CS
         PFK 279 kavel 283
                 +a+++
  KIR62073.1 292 QAIDA 296
                 **985 PP

>> NRD1_2  NrpR regulatory domains NRD1 and 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   9.5e-07    0.0085     146     207 ..      63     121 ..      52     126 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.5e-07
                 -SSSEEEEEEEEEETTTHHHHHHHHHHH...T-TTEEEE--TT--BTTB---TTEEEEEEE- CS
      NRD1_2 146 tgegkilAnlReipvsarekveeileklkkagisgvleigepneevlgvpveeekvgivvvg 207
                 +g g+il++ R+ p++ ++ ve+i e+l ++g+  +++ig   e++lgv  + +++g+ vvg
  KIR62073.1  63 RG-GTILGSSRTNPFKIENGVERIKENLAAQGVDALIAIGG--EDTLGVATKLHELGVNVVG 121
                 44.9*************************************..***************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2643.41
//
Query:       KIR62074.1  [L=179]
Description: NUDIX hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-22   80.4   0.2    1.5e-22   80.1   0.2    1.1  1  NUDIX     NUDIX domain
  ------ inclusion threshold ------
       0.23   11.0   0.0       0.29   10.7   0.0    1.1  1  NUDIX_2   Nucleotide hydrolase


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.2   1.6e-26   1.5e-22       2     120 ..      32     147 ..      31     158 .. 0.88

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 1.6e-26
                 EEEEEEEEEEETTSEEEEEEESSSSTTTEESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.EEECSGCSST CS
       NUDIX   2 lrravgvvllnekgevLlvrrskkpfpgWelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfl.eevegelepn 99 
                 +r+++ v+++ne+g+vLlv  +  ++p+W+lPgG+ve++Etp +AA REl EE+G+e++  +ll    ++  ++gp++d  ++++vf  + v+ge++  
  KIR62074.1  32 KRVGADVLIRNEQGHVLLVNPR--YKPDWDLPGGMVEANETPHQAAERELCEELGVEVRAGRLLV--VDWVAPHGPWDD--SLMFVFDcGMVTGEQARS 124
                 6899***************944..8999***************************9999999997..567777788885..8999999*9999999988 PP

                 ...STTTEEEEEEEEHHHHHHHHT CS
       NUDIX 100 ...denevsevrwvpleellkekl 120
                    +++e+ e+r+++++++ +++l
  KIR62074.1 125 lrlADGELLEFRFISPDDA-RATL 147
                 999****************.4433 PP

>> NUDIX_2  Nucleotide hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.3e-05      0.29      50      98 ..      38      86 ..      18     101 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.3e-05
     NUDIX_2 50 llvhrhelphvLlLqielq.efkLpggklksgedeiegLkrkLakklske 98
                +l+ r+e  hvLl   + +  + Lpgg +++ e++ ++ +r L + l  e
  KIR62074.1 38 VLI-RNEQGHVLLVNPRYKpDWDLPGGMVEANETPHQAAERELCEELGVE 86
                333.567789****9666659**********************9999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1383.57
//
Query:       KIR62075.1  [L=357]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-13   50.1   0.0      6e-13   49.4   0.0    1.3  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    4.3e-05   23.8   0.0    0.00017   21.9   0.0    1.8  2  FAD_binding_6  Oxidoreductase FAD-binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   6.7e-17     6e-13       1     106 [.     231     330 ..     231     332 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 6.7e-17
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvy 96 
                    ++agGtG+aP+rs++++++++    ++v+lv G+r   dl+ +  l++l++++++ l++v+++s+++   +g++g   +  l+++ +    ++ vy
     KIR62075.1 231 LVAGGTGLAPLRSLVEQVVAA-PAGRRVTLVVGARAFVDLYDSVSLDKLQRAHDW-LTLVPALSHDPLAGAGERGDALTVALDHYRP----GQEVY 320
                    79******************8.678******************************.9999999999998889999877777666666....99*** PP

                    EECSHHHHHH CS
  NAD_binding_1  97 vCGppgMika 106
                    +CGpp+M ++
     KIR62075.1 321 LCGPPPMLAG 330
                    *******875 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.9e-08   0.00017      26      88 ..     149     209 ..     138     215 .. 0.83
   2 ?   -1.5   0.0      0.36   3.2e+03      75      93 ..     306     324 ..     300     326 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.9e-08
                    S-----TT-EEEEEEC.ETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHH.HCS-TT-EE CS
  FAD_binding_6  26 qklglpvGqhvflrlk.ikgeaviRsYtpissenekGelellvkvypgGkmsqaL.delkigdtl 88 
                     +l +++Gq v ++++  +g+  +R Y+p++++  +G++el+v+ ++  ++s aL + +++gd +
     KIR62075.1 149 RRLPFRPGQAVPVCTErWPGR--WRWYSPANAPRPDGTVELHVRAVA--AVSRALvHAVRPGDPI 209
                    678899*********977786..*********************996..5777775667777755 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.36
                    HHHHHHCS-TT-EEEEEEE CS
  FAD_binding_6  75 msqaLdelkigdtleikGP 93 
                    ++ aLd+ ++g+ + + GP
     KIR62075.1 306 LTVALDHYRPGQEVYLCGP 324
                    6778999999999998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2750.17
//
Query:       KIR62076.1  [L=149]
Description: hypothetical protein TK50_23655 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1180.55
//
Query:       KIR62077.1  [L=130]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-23   80.3   0.2    1.3e-22   79.7   0.2    1.3  1  Rv2175c_C   Rv2175c C-terminal domain of unknown function
    0.00021   21.4   0.0    0.00032   20.8   0.0    1.3  1  HTH_17      Helix-turn-helix domain
  ------ inclusion threshold ------
       0.01   15.8   0.1      0.026   14.6   0.1    1.7  1  DUF2384     Protein of unknown function (DUF2384)
      0.055   13.3   0.0       0.12   12.2   0.0    1.6  1  HTH_IclR    IclR helix-turn-helix domain
       0.11   12.1   0.0        0.2   11.3   0.0    1.4  1  HTH_24      Winged helix-turn-helix DNA-binding
       0.14   12.3   0.0       0.29   11.3   0.0    1.4  1  Sigma70_r3  Sigma-70 region 3


Domain annotation for each model (and alignments):
>> Rv2175c_C  Rv2175c C-terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.2   4.2e-26   1.3e-22       2      56 .]      74     129 ..      73     129 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 4.2e-26
   Rv2175c_C   2 kgLpGtltvLrDgGfddeeilrWLFteDesLpg.rPidALregrkrEVkRrAqAlA 56 
                 k+LpG+lt+L+D+G+dde++lrWL+++D++L+g +P   L  +++rEVkRrAqAl+
  KIR62077.1  74 KHLPGVLTLLADAGYDDEAALRWLYEPDDTLSGgTPAATLGGDHAREVKRRAQALG 129
                 89******************************77********************96 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.1e-07   0.00032       2      40 ..      26      64 ..      25      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.1e-07
      HTH_17  2 ltveEaAelLgvsrstvyrlirrgelpaakiGrrwripr 40
                l   ++Ae L++s s+v+++ir+ el a+++ + +r+p 
  KIR62077.1 26 LALPDVAERLDLSISKVHQMIRDRELLAVRRDGVRRVPA 64
                56789*********************9998777798885 PP

>> DUF2384  Protein of unknown function (DUF2384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   8.6e-06     0.026       8      41 ..      89     121 ..      80     124 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.6e-06
     DUF2384   8 deeraarWLrrPnpaLggrtPldlldteaGarlV 41 
                 d+e+a rWL +P   L g tP+  l   + ar+V
  KIR62077.1  89 DDEAALRWLYEPDDTLSGGTPAATLG-GDHAREV 121
                 7899999***************9988.6666666 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.9e-05      0.12      19      40 ..      26      47 ..      12      48 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.9e-05
                -BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 19 ltlselArrtglpkStvhRlLq 40
                l l ++A+r++l+ S+vh +++
  KIR62077.1 26 LALPDVAERLDLSISKVHQMIR 47
                6999**************9975 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.5e-05       0.2      22      39 ..      30      47 ..      26      48 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.5e-05
      HTH_24 22 eLAerlglSpstvnrrlk 39
                ++Aerl+lS+s v++ ++
  KIR62077.1 30 DVAERLDLSISKVHQMIR 47
                89*************998 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.6e-05      0.29      25      43 ..      30      48 ..      28      51 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.6e-05
                HHHHHHTXXHHHHHHHHHH CS
  Sigma70_r3 25 EiAeeLglseekVrevlea 43
                ++Ae+L+ls++kV++++++
  KIR62077.1 30 DVAERLDLSISKVHQMIRD 48
                69**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 997.46
//
Query:       KIR62078.1  [L=272]
Description: hypothetical protein TK50_23725 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-37  129.6  25.0    2.2e-37  128.9  24.9    1.4  1  Caroten_synth  Carotenoid biosynthesis protein


Domain annotation for each model (and alignments):
>> Caroten_synth  Carotenoid biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9  24.9   1.2e-41   2.2e-37       3     205 ..      30     231 ..      28     238 .. 0.85

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 1.2e-41
  Caroten_synth   3 vvlillgtaalalyavrllglrralaflllavllslaiEllGvstGfpfGeYsYlsglgpkllglVPltiPlswfplvlaayllarlllesrakrs 98 
                    v+ ++lg ++ + +a+ + g r a+a++++a++ ++aiE lGv+tGfpfG+Y Y  +lgpkl+g VPl+iPl+w+ +   a+l a  l++    + 
     KIR62078.1  30 VATVVLGYLLSVGHALLTRGPRAAAALVAVATGGGFAIEALGVATGFPFGSYDYSGELGPKLAG-VPLVIPLAWTWMAWPAWLTAARLVS----PG 120
                    567888888888889999**********************************************.********************99987....77 PP

  Caroten_synth  99 lvrlllaalllvawDlvLDPamvalgfWvweepG....afygvPlqNflGWlltglvlvlvlellwrkkaleerreqlelplavllsnfllaavln 190
                    + r++laa+ l awDl+LDP+mva g+Wvw++         gvP++N+lGWll +++l+++l+ l+    + +       ++a++l++ + + + +
     KIR62078.1 121 VARVALAAVGLAAWDLFLDPQMVAEGYWVWRDATpalpGLPGVPVSNYLGWLLFAVLLMAALRPLAGA-VVDRAGPGDAPMFALYLWTYASSILAH 215
                    99****************************55554455789********************9988866.344444444566777777777777777 PP

  Caroten_synth 191 lla.gllipallglll 205
                    +++ gl+++a+ g++ 
     KIR62078.1 216 AVFlGLPASAVWGAAG 231
                    7666777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 1717.37
//
Query:       KIR62079.1  [L=162]
Description: prolyl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-28   99.6   0.8    1.4e-28   99.4   0.2    1.4  2  tRNA_edit  Aminoacyl-tRNA editing domain


Domain annotation for each model (and alignments):
>> tRNA_edit  Aminoacyl-tRNA editing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.37   6.7e+03       1      15 [.       4      18 ..       4      22 .. 0.75
   2 !   99.4   0.2   8.1e-33   1.4e-28       2     122 ..      34     152 ..      33     153 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.37
   tRNA_edit  1 tpgtktieelaaalg 15
                +p+++ ++e+ +a+g
  KIR62079.1  4 HPNVRAVQEALDAAG 18
                788888888888777 PP

  == domain 2  score: 99.4 bits;  conditional E-value: 8.1e-33
   tRNA_edit   2 pgtktieelaaalgvdpsaiaKtlvlkdkkgelvlvllpgdreldlkklakllgakklrlaseeelrellgvepGgvgPlglkaagvpvllDeslkeyp 100
                 ++++t++++a+algv+ +aia++lv++ +++ ++lvl++g++++d + la++lg   lr a++e +r+++g ++Ggv Plg+ ++ +++++D +l++y+
  KIR62079.1  34 EAVHTAAAAADALGVAVGAIANSLVFD-ADDAPLLVLTSGAHRVDVAGLAAHLGFTHLRRATPEFVRRHTGQPIGGVAPLGH-PEPLRTIVDVALAGYD 130
                 689************************.6888*************************************************9.9*************** PP

   tRNA_edit 101 tvvvgagengatlelspedlrk 122
                 +v++++g ++a++ +++++l++
  KIR62079.1 131 EVWAAGGVPQAVFPTTYAELLR 152
                 ******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1050.38
//
Query:       KIR62080.1  [L=254]
Description: hypothetical protein TK50_23745 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-39  134.4   0.0    6.4e-30  104.5   0.1    2.0  2  ApbE      ApbE family


Domain annotation for each model (and alignments):
>> ApbE  ApbE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   6.6e-11   1.2e-06       1      72 [.       1      83 [.       1      90 [. 0.84
   2 !  104.5   0.1   3.6e-34   6.4e-30     116     256 ..      91     227 ..      84     229 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 6.6e-11
                TTEEEEEEEE..........HH.HHHHHHHHHHHHHC-SS-TTSHHHHHHCTS.S-EEE-HHHHHHHHHHHHHHHHTTTSS-T CS
        ApbE  1 mgttvsitly..g.......le.aaieaelerlekllsryrpdSelsrlNrak.kevkvspelaellkaaleiseltdgafdp 72
                mg +vs++l   g       ++ +a++ael++ ++++s+yrpdS l rl  ++ ++ +++p + e+++ ++ +  +t+g fd 
  KIR62080.1  1 MGLPVSVHLRgpGvrddsvaARvEAFFAELHAADDTFSTYRPDSVLGRLAGRSpDPATADPAVREVVELCELARLRTGGRFDA 83
                888899998654144556643369999***********************665499**************************7 PP

  == domain 2  score: 104.5 bits;  conditional E-value: 3.6e-34
                 ..-----TTTHHHHHHHHHHHHHHH.TT-EEEEEETTEEEEEC.-ECT-EEEEEE-TTS..SEEEEEEESSSEEEEEETTSSEEETEEEES-B-TTTSS CS
        ApbE 116 pgmkLDlggiaKGyavdrvaellka.giksalvnlGGdiralG.pdgkpwrvgiedPra..ellavlslsddavaTSGdyeryfegkryhHiidprtgy 210
                  g+  D +g+ KG+av+r+a+ l +   +++++n+GGd+++   pd+ +wrvg+edP++   ll vl+ +++avaTSG+ +r   g    Hi dpr g+
  KIR62080.1  91 GGVGFDPSGLVKGWAVERAARWLTDlADHDVCLNAGGDVLLRAaPDRPAWRVGVEDPQSpgHLLDVLERASGAVATSGTARR---G---THITDPRAGR 183
                 46899***********************************99999999*********94568899***9989******9999...4...8********* PP

                 B---SECEEEEEESC.HHHHHHHHHHHHHHHHHHHHHHCCGGGTCTE CS
        ApbE 211 PaesglasvtViads.alADalaTalfvlgeekalellekkeegvea 256
                 Pa + ++svtV+ ++ + AD++aTa+++ g++ al++l++  +g +a
  KIR62080.1 184 PA-EAVRSVTVVGPDlLWADVYATAAVAGGPD-ALDWLATL-DGYAA 227
                 **.7********9988**********997766.68888854.45666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1895.42
//
Query:       KIR62081.1  [L=404]
Description: hypothetical protein TK50_23825 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-10   39.7   1.6    4.5e-10   39.7   1.6    3.8  4  HTH_31    Helix-turn-helix domain
    2.6e-05   24.2   0.1    0.00011   22.1   0.0    2.2  2  HTH_3     Helix-turn-helix


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   1.6     5e-14   4.5e-10       2      58 ..       6      62 ..       5      67 .. 0.94
   2 ?    1.1   0.1     0.058   5.2e+02      43      56 ..     152     165 ..     139     170 .. 0.82
   3 ?   -1.8   0.2      0.46   4.1e+03       6      21 ..     251     267 ..     249     274 .. 0.71
   4 ?   -2.2   0.2      0.63   5.6e+03       7      13 ..     370     376 ..     352     398 .. 0.66

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 5e-14
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldp 58
                +G++++ +R r+ +sq++ A+++g s+s++ ++E+G r + +++ l a+a++l++d 
  KIR62081.1  6 IGRRVAYWRGRRSMSQQQFADAIGKSKSWVDKVERGVRRLDKLSSLQAVADGLRVDL 62
                799***********************************999**************96 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.058
      HTH_31  43 spavlealaralgl 56 
                  p+++ +la+a++ 
  KIR62081.1 152 APEAVQRLAEAYQI 165
                 689********985 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.46
      HTH_31   6 LralReraGLsqe.evA 21 
                 L a+R +aGL ++  vA
  KIR62081.1 251 LVAARGAAGLGHAdSVA 267
                 66889999998873455 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.63
      HTH_31   7 ralRera 13 
                 r++R+ +
  KIR62081.1 370 RHRRQGH 376
                 4444333 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.3e-08   0.00011       4      54 ..      13      64 ..      10      65 .. 0.86
   2 ?   -2.0   0.0      0.44   3.9e+03      38      50 ..     153     165 ..     151     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.3e-08
                HHHHTTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHHH CS
       HTH_3  4 lRkqlglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvslde 54
                +R  + +sq+++A+++G s+s + + E+G +r   l+ l+++a+ L v+l+ 
  KIR62081.1 13 WRGRRSMSQQQFADAIGKSKSWVDKVERGvRRLDKLSSLQAVADGLRVDLRL 64
                688899***********************66666788999999999998875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.44
                 HHHHHHHHHHHTS CS
       HTH_3  38 letlkklakaLgv 50 
                 +e +++la+a+++
  KIR62081.1 153 PEAVQRLAEAYQI 165
                 678999***9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3200.91
//
Query:       KIR62082.1  [L=432]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-22   78.5   2.1    7.4e-22   77.4   1.0    2.1  2  DUF58     Protein of unknown function DUF58


Domain annotation for each model (and alignments):
>> DUF58  Protein of unknown function DUF58
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.22     4e+03      41      80 ..      89     128 ..      76     133 .. 0.73
   2 !   77.4   1.0   4.1e-26   7.4e-22       2      86 .]     196     280 ..     195     280 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.22
       DUF58  41 rtvllvldlspemslgstgdekletavsaaaslarqllde 80 
                 +t +l+l  +    lgs+++  le++ + +as +++ +++
  KIR62082.1  89 PTGTLLLEDRLPYALGSRPRVVLERLGAHQASSVAYTVRA 128
                 5667788888888888888888998888888877777665 PP

  == domain 2  score: 77.4 bits;  conditional E-value: 4.1e-26
       DUF58   2 ldfaglReYvpgDplrrIdWkatARtgelyvrefeaerartvllvldlspemslgstgdekletavsaaaslarqlldegdrvgl 86 
                 +d a +ReY+ gD+lrr++Wk+tARtgel+vr  e+  +++ ++vld++   ++g+ +  ++e avsaaas+a +l ++g++ +l
  KIR62082.1 196 EDDAATREYRMGDDLRRVHWKSTARTGELMVRREEQPWESRATVVLDTRGYGHRGDGPTASFEWAVSAAASIAVHLRQAGYKLRL 280
                 677889**************************************************************************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3013.52
//
Query:       KIR62083.1  [L=226]
Description: hypothetical protein TK50_23850 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-16   60.2  10.8    2.6e-16   60.2  10.8    2.3  2  SNARE_assoc  SNARE associated Golgi protein
  ------ inclusion threshold ------
       0.36   11.1   6.8        1.2    9.3   2.0    2.6  2  TetR_C_16    Tetracyclin repressor-like, C-terminal domain
          2    8.6   4.8       0.86    9.7   1.7    2.1  2  Leader_Trp   Trp-operon Leader Peptide
        7.7    6.5   5.6         39    4.2   2.3    2.5  2  RseC_MucC    Positive regulator of sigma(E), RseC/MucC


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.19   8.3e+02      48      83 ..       6      37 ..       3      41 .. 0.76
   2 !   60.2  10.8   5.8e-20   2.6e-16       1     119 [.      69     185 ..      69     186 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.19
  SNARE_assoc 48 rkllsekrvkalerlverygflallllrllpivPrd 83
                 r+ll + ++++++ l+     l++ l+ llp++Pr+
   KIR62083.1  6 RRLLGQPAARRFALLL----LLLAGLAALLPVLPRP 37
                 6677777777777777....7778899999999985 PP

  == domain 2  score: 60.2 bits;  conditional E-value: 5.8e-20
  SNARE_assoc   1 lPsevllvaaGvlfglllgtlvtslgallGaslayllgrylgrkalrrkllsekrvkalerlverygflallllrllpivPrdlvnyvaGltrvsfkr 98 
                  +P +++++a+G++fg+l g  +++ +all+a l++++gr lgr+ + +++  + r+ +l+ ++ r  +l + ++rllpi  + lv+y  G+t+ ++ +
   KIR62083.1  69 VPRTFVTLAVGAIFGPLEGAAYALGAALLAAALGFAVGRALGREFVAERV--RGRLARLDGWFARQSVLGVATVRLLPISGYGLVSYGYGTTGARVLP 164
                  6999**************************************77777766..677788**************************************** PP

  SNARE_assoc  99 FflatfiGsipwalvyaylGs 119
                  ++++++++s+p+a+ ya lG+
   KIR62083.1 165 YLAGSVLASAPTAFGYAALGA 185
                  ******************996 PP

>> TetR_C_16  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.0   0.00028       1.2      49      92 ..       2      44 ..       1      50 [. 0.87
   2 ?    3.8   0.2     0.015        65      20      54 ..      90     124 ..      68     142 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00028
                HHHCTTTS-STTHHHHHHHHHHHHHHHHHHHHTS--TTCCCS-H CS
   TetR_C_16 49 laplaarlggpdaelRaalvasqllGlalaRyvlrleplasasr 92
                l+++++ lg+p a++R al++ +l+Gla ++ vl  ++ a+++r
  KIR62083.1  2 LPAVRRLLGQP-AARRFALLLLLLAGLAALLPVLPRPEPAALPR 44
                67888888877.99********************9998888775 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.015
                 -HHHHHHHHH--------HHHHHHHHHHHHHHCTT CS
   TetR_C_16  20 repllallrsalsseeaaellrefleeqvlaplaa 54 
                  +  +all +al+    ++l ref++e+v ++la+
  KIR62083.1  90 YALGAALLAAALGFAVGRALGREFVAERVRGRLAR 124
                 44456777788888888888899999999888875 PP

>> Leader_Trp  Trp-operon Leader Peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       3.9   1.8e+04       7      10 ..     125     128 ..     125     129 .. 0.81
   2 ?    9.7   1.7   0.00019      0.86       3      12 ..     208     217 ..     206     218 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.9
  Leader_Trp   7 LlgW 10 
                 L gW
  KIR62083.1 125 LDGW 128
                 7799 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00019
  Leader_Trp   3 alfsLlgWWr 12 
                 +   L++WWr
  KIR62083.1 208 SAVLLHRWWR 217
                 5667*****9 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   2.3    0.0087        39      69     118 ..      65     113 ..      48     119 .. 0.65
   2 ?    2.8   0.1     0.023     1e+02      82     117 ..     181     218 ..     162     225 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0087
   RseC_MucC  69 lvYllPllllilgallgsall...............gssellaalgallglvlgflivrllskrl 118
                 lv l                +               +++ ++a+ +all+++lgf + r l +++
  KIR62083.1  65 LVAL----------------VprtfvtlavgaifgpLEGAAYALGAALLAAALGFAVGRALGREF 113
                 3334................333333333333333578899999999999999999999888775 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.023
   RseC_MucC  82 allgsall..gssellaalgallglvlgflivrllskr 117
                 a+lg a++  g+ +++aa+ a lgl+++ ++++++ + 
  KIR62083.1 181 AALGAAATspGDVNWYAAAPASLGLIASAVLLHRWWRA 218
                 44444444678899999999999999999998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1535.29
//
Query:       KIR62084.1  [L=364]
Description: 16S rRNA methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.6e-105  351.9   0.0   4.1e-105  351.7   0.0    1.0  1  Methyltransf_5   MraW methylase family
  ------ inclusion threshold ------
       0.24   11.2   0.0        1.9    8.3   0.0    2.0  2  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_5  MraW methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.7   0.0  4.6e-109  4.1e-105       3     308 ..       7     315 ..       5     316 .. 0.99

  Alignments for each domain:
  == domain 1  score: 351.7 bits;  conditional E-value: 4.6e-109
                     XX--TTTHHHHHHT--....-TT-EEEES--TTSHHHHHHHTT--TTEEEEEES-HHHHHHHTT.....---EEEEES-GGGHHHHHHHTTTT-E CS
  Methyltransf_5   3 eHvpVLlqevvellep....kedgvyiDaTlGaggHsealLeqlselrligidrDksalarakerLkefekrltlvkgnfkelkealaeanvtkv 93 
                     +HvpVLl++++ell+p    ++ ++++DaTlG +gH+ea+L++ +++ lig+drD++ala+a+ rL++f++r++l ++ ++el e+la  +  ++
      KIR62084.1   7 THVPVLLERCLELLAPaldrGDRTIHVDATLGLAGHAEAVLQRHPRTVLIGLDRDTEALAHARVRLARFADRVHLEHAVYDELPEVLARLGYPAI 101
                     6**************999988899*********************************************************************** PP

                     EEEEEE-S--HHHHH-GGG---SSS--BS---S-TTSS--HHHHHHH--HHHHHHHHHHHH--TTHHHHHHHHHHHHHHS---BHHHHHHHHHHH CS
  Methyltransf_5  94 dgillDLGvSslqldkaerGFsfaedapLDmRmdqsaeltAaevlnrlseeeLakilkeygeekfakriakaivekrkkkpiettkelaevikkv 188
                     dg+l+DLGvSslqld ++rGF++a+dapLDmRmdq++ +tA+ev+n++s+ +La++l+ ygeekfa ria ai ++r+++ i++ + lae++ + 
      KIR62084.1 102 DGVLFDLGVSSLQLDAPDRGFAYAQDAPLDMRMDQTRGVTAEEVVNTYSHPDLARVLRVYGEEKFAPRIASAILRERERARITSSARLAELVRES 196
                     *********************************************************************************************** PP

                     S-------..-TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTT-------------------EEEEE.E CS
  Methyltransf_5 189 vpakekrkkihpatrvFQAlRIavNdEleeleelleaalellakggrlavisFhSledrivkkvfkeaskkeevPaglpvaseelkaklklitkk 283
                     +pa+++r ++hpa+r+FQAlRI+vN+El++le++l+aal+ l  ggr++v+s+hSledr++k ++ +  + ++ P +lpv+  +  + ++l+++ 
      KIR62084.1 197 IPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDKLTVGGRMVVLSYHSLEDRLTKAALADRVR-SKGPVDLPVELPGSGPTFRLLSRG 290
                     ********************************************************************99.799********************* PP

                     .E---HHHHHH-GGGTT-EEEEEEE CS
  Methyltransf_5 284 pilpseeeikeNprsrsakLrviek 308
                     + lp+e+e+++Npr+ s++Lr++e+
      KIR62084.1 291 AELPGEAEVAANPRAASVRLRAAER 315
                     ***********************98 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00021       1.9      28      69 ..      52      92 ..      38     157 .. 0.83
   2 ?    0.5   0.0     0.052   4.7e+02      87     119 ..     224     256 ..     212     276 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00021
  Methyltransf_31 28 kaevvGiDiseeaielArenaqklgldnveFeqgdieelekl 69
                     +  ++G+D++ ea+ +Ar +++  + d+v++e++   el++ 
       KIR62084.1 52 RTVLIGLDRDTEALAHARVRLA-RFADRVHLEHAVYDELPEV 92
                     44489**************988.7778999999888888865 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.052
  Methyltransf_31  87 ladpdkileeiervlkpggilliedprllaelp 119
                      la+++ +l  + + l+ gg++++ +++ l++ +
       KIR62084.1 224 LAALETALPAALDKLTVGGRMVVLSYHSLEDRL 256
                      56667777788999*******999888333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2828.54
//
Query:       KIR62085.1  [L=468]
Description: cell cycle protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-88  294.9  15.9    9.3e-88  294.6  15.9    1.0  1  FTSW_RODA_SPOVE  Cell cycle protein
  ------ inclusion threshold ------
        4.3    7.8   5.6        3.6    8.1   0.9    2.8  2  DUF3624          Protein of unknown function (DUF3624)


Domain annotation for each model (and alignments):
>> FTSW_RODA_SPOVE  Cell cycle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.6  15.9     1e-91   9.3e-88       4     355 ..      18     391 ..      15     394 .. 0.89

  Alignments for each domain:
  == domain 1  score: 294.6 bits;  conditional E-value: 1e-91
  FTSW_RODA_SPOVE   4 lllvllllvilGlvmiysaslveslvlfgdsfvlfirqlvylllglivfvlllriplkfleklakllliislllLvlvkvp......lgssanG 91 
                      l+  + ll ++Gl m++sa +v+++   g++f  + +q +++++g+++f+++ r+p ++++ +a + l i ++lL+++++       +g+++ G
       KIR62085.1  18 LISSAGLLLVIGLTMVFSATSVKNYAEEGNAFADATQQAIFAVIGVVAFWVCQRLPASTYRSVAGTALGIAVVLLLVLNLLlaldsfFGVKRVG 111
                      5556667777****************************************************99998888877777666543233456666665 PP

  FTSW_RODA_SPOVE  92 Akr....WirlggisiqPsEfvkialilflAavlskkkkevksrlrellillvivllilvlillqpdlgtavllliillvvlflsglslklila 181
                             W+ +gg+++qPsE++k al+l+ A vl++ k  +   ++el+ +l  v+ +l +++  +d+gt + ll++++++l+++g+++k++++
       KIR62085.1 112 PLEanllWLFVGGVQLQPSELAKFALVLWGADVLAR-KGARLGWWKELATPLFPVVALLFVLVGYNDVGTMLCLLALVVGLLWAAGVRTKVFAV 204
                      3224445*****************************.77888999999*****88888899999***************************988 PP

  FTSW_RODA_SPOVE 182 ivla.lilviaivll.........illedyqvkrvtslldpfkdpl...gsgYqviqsliAigsGGllGkGlgnsqqkleyLPeahtDfIfavi 262
                      + +  l+++  +v+             e+y+++r+t++++p   +    ++ Yqv q+ +Ai++GG +G Glg+s  k++ LPeah+DfIfav+
       KIR62085.1 205 LSVIgLVGIGLLVAAaslgagsgaKGQENYRLARLTTFVNPPPPQEcfaEQCYQVAQARNAIEHGGWFGVGLGKSSFKFGWLPEAHNDFIFAVL 298
                      766335555444444667888887778899**********9887668899******************************************** PP

  FTSW_RODA_SPOVE 263 gEelGlvGvllllllffllivrglriarkakdrfgsllavgivllivvqsfinigmvlGllPvtGltlPflSyGGsSllalliligillnisr 355
                      +EelG+vG+++l+ lf +l ++glriar+ +d+f++l a+g ++++v q++inig+v+Gl+P+tG++lPf+S GGs+l++++++ig+l++ +r
       KIR62085.1 299 AEELGVVGCVVLITLFAVLGYTGLRIARRVEDPFRRLAAAGATTWLVGQAIINIGGVTGLMPLTGVPLPFISDGGSALVVTMAAIGMLASFAR 391
                      ****************************************************************************************98765 PP

>> DUF3624  Protein of unknown function (DUF3624)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.9   0.00041       3.6      23      69 ..      53      99 ..      50     103 .. 0.92
   2 ?    0.5   0.3     0.091   8.2e+02      24      53 ..     181     210 ..     177     222 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00041
     DUF3624 23 kqltvlsvlswlvWwllfkdtpksvesialllaafafsgLLllHlvv 69
                +q ++++v++ +++w++ +    +  s+a    ++a+ +LL+l l+ 
  KIR62085.1 53 TQQAIFAVIGVVAFWVCQRLPASTYRSVAGTALGIAVVLLLVLNLLL 99
                68899**************************************9975 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.091
     DUF3624  24 qltvlsvlswlvWwllfkdtpksvesiall 53 
                 +l +l++++ l+W   ++ ++  v s+  l
  KIR62085.1 181 MLCLLALVVGLLWAAGVRTKVFAVLSVIGL 210
                 688999999999999999998888877554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 3049.46
//
Query:       KIR62086.1  [L=246]
Description: alanine racemase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-19   68.8   4.9      6e-19   68.6   4.9    1.0  1  Ala_racemase_N  Alanine racemase, N-terminal domain


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   4.9   3.3e-23     6e-19       4     218 ..      19     242 ..      17     243 .. 0.87

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 3.3e-23
                     HHHHHHHHHHHHHS.CT..TSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHH....HHHHTTSCSEEEEESCSTGGGHHHHHHT.TE CS
  Ala_racemase_N   4 dalrhNlrrlrala.gp..gaklmavvKanayghgavevaralaeggadgfgvatleEal....elreagitapilvlegfspeelaalaey.dl 90 
                     +++r++++ + a+a +   ++ ++av+K+  y++  v ++      g+  +g+++ +Ea     e+++ag t ++  ++  ++++ +++++y d+
      KIR62086.1  19 ARVRSRIADACAAAgRDraEVTMVAVTKT--YPASDVLALA---GLGVVDMGENRDQEAAgkaaEVAAAGATPRWHFIGQLQRNKCRSVVRYaDV 108
                     56677777777777433666779******..9999966666...3469***************************99999***********99** PP

                     EEEESSHHHHHHHHHHHHH.TTS-EEEEEEBESSSS..SSSBSCHHH......HHHHHHHHHTTTEEEEEEE-S-SSTTSTSHHHHHHHHHHHHH CS
  Ala_racemase_N  91 tvtvdsleqlealaaaare.agkplrvhlkidtgmg..RlGftpeel......eellealaalpglrleglmtHfasadepdeeteaqlarfeea 176
                     ++ vds   ++al+aaa +  ++p++v++++ ++ +  R+G  p  +        ++ea+a + glrl glm   +   ep+    + +ar++e+
      KIR62086.1 109 VQSVDSVRLARALDAAALAsRDRPVDVLVQVSIDADpaRGGALPGSAdadvglGPVAEAVAGAAGLRLAGLMAVAPLGWEPQ----RAFARLAEV 199
                     *****************99899********99998899***7774441122335578899999****************977....99******* PP

                     HHHHHHTTGGGSEEEEESHHHHHHSGGG.TTEEEESGGGGT-S CS
  Ala_racemase_N 177 leelekaglrppvvslanSaaillaaah.fdmvRpGialyGls 218
                     ++++++a+++   +s+++S+++ +a+ h  ++vR+G+al G +
      KIR62086.1 200 AQAFRAAHPEAVALSAGMSGDLEAAIRHgATHVRVGSALLGMR 242
                     ****99899999*************8788***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1868.49
//
Query:       KIR62087.1  [L=139]
Description: conjugal transfer protein TraR [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-13   49.8   1.3    4.1e-13   49.0   1.3    1.4  1  zf-dskA_traR     Prokaryotic dksA/traR C4-type zinc finger
  ------ inclusion threshold ------
      0.036   14.3   1.0      0.045   14.0   1.0    1.2  1  Gluconate_2-dh3  Gluconate 2-dehydrogenase subunit 3
      0.074   13.3   0.9       0.29   11.4   0.1    2.1  2  THDPS_N_2        Tetrahydrodipicolinate N-succinyltransferase
      0.081   13.0   0.3       0.14   12.2   0.3    1.3  1  DZR              Double zinc ribbon
       0.15   11.7   0.0       0.28   10.8   0.0    1.4  1  zf_C2H2_13       Zinc finger domain
       0.49   10.6   5.3       0.98    9.6   5.3    1.5  1  PEP-utilisers_N  PEP-utilising enzyme, N-terminal


Domain annotation for each model (and alignments):
>> zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   1.3   1.4e-16   4.1e-13       1      36 []     103     138 ..     103     138 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 1.4e-16
  zf-dskA_traR   1 giygsCeeCGEpIpeaRlralPgarlCveCqekaer 36 
                   g+yg Ce+CG+pIp +Rl a P a+lCv C++ +er
    KIR62087.1 103 GGYGWCEKCGDPIPVERLAAFPSATLCVKCKQLEER 138
                   78******************************9986 PP

>> Gluconate_2-dh3  Gluconate 2-dehydrogenase subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.0   1.5e-05     0.045      41     112 ..      20      90 ..       5     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
  Gluconate_2-dh3  41 plppeqeayrkglaaldayaraeygksFveldgaqqdalLealekeaeakgtgealeasaeahfFsllrelt 112
                      ++ +e e +r++laa  +++ aey+++  e+++ q+d+l +++ +++ ++gt ++ e ++e +  + +re +
       KIR62087.1  20 RSAAETEKIRAALAARRDELSAEYDQTLSEITELQRDRLTDSAGDDQADTGT-KTFEREQEISLANSIRERI 90 
                      56677899***********************************999877665.5577777777777777765 PP

>> THDPS_N_2  Tetrahydrodipicolinate N-succinyltransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.36   1.1e+03      22      36 ..      25      39 ..      11      53 .. 0.63
   2 ?   11.4   0.1   9.8e-05      0.29       8      46 ..      72     110 ..      67     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.36
                -HHHHHHHHHHHHHH CS
   THDPS_N_2 22 gaearaaveevleaL 36
                ++++raa+ +  ++L
  KIR62087.1 25 TEKIRAALAARRDEL 39
                344455555544444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 9.8e-05
                 HHHHTGGG--SSS--HHHHHHHHHHHHHHHTTSS-SEEE CS
   THDPS_N_2   8 aawerrdelepetagaearaaveevleaLdaGelRvAek 46 
                 + +er +e++ +++ +e    ve++le Ld+G    +ek
  KIR62087.1  72 KTFEREQEISLANSIRERITQVERALERLDEGGYGWCEK 110
                 689*******77777999999***********9888887 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   4.6e-05      0.14      14      36 ..     107     134 ..      99     138 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.6e-05
         DZR  14 fCseCgtklkavaa......edrCpsCge 36 
                  C++Cg +++ v++      ++ C++C++
  KIR62087.1 107 WCEKCGDPIP-VERlaafpsATLCVKCKQ 134
                 6*******75.444577888*******97 PP

>> zf_C2H2_13  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.3e-05      0.28      17      30 ..     105     118 ..      91     122 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.3e-05
  zf_C2H2_13  17 YRvCnkCGkPisle 30 
                 Y  C+kCG Pi +e
  KIR62087.1 105 YGWCEKCGDPIPVE 118
                 778********887 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   5.3   0.00033      0.98      25     109 ..      17     101 ..       7     105 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00033
                      G.GGHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHT-HHHHHHHHHHH....HHHT--HHHHHHHHHHHHHHHHHHTT CS
  PEP-utilisers_N  25 eaedveaelerleeAlekvreelealaekalgeeeaaifeahlmlleDpelleeveerI....regglnaeaAveevveefaaqfeald 109
                      ++++ +ae e++++Al++ r+el+a ++++l+e    i e ++  l D++  +++ +      re++++ ++ ++e + ++ +++e+ld
       KIR62087.1  17 RTTRSAAETEKIRAALAARRDELSAEYDQTLSE----ITELQRDRLTDSAGDDQADTGTktfeREQEISLANSIRERITQVERALERLD 101
                      445678********************9999755....9999999999988777776555111145666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1036  (0.0577835); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 920.43
//
Query:       KIR62088.1  [L=143]
Description: organic hydroperoxide resistance protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-19   68.8   0.0    6.2e-19   68.3   0.0    1.1  1  OsmC      OsmC-like protein


Domain annotation for each model (and alignments):
>> OsmC  OsmC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   3.5e-23   6.2e-19       1      99 [.      39     135 ..      39     136 .. 0.94

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 3.5e-23
                 TTXSSB-HHHHHHHHHHHHHHHHHHHHTCCCT---SCEEEEEEEEEECCECTCEEEEEEEEEEE-SS-H..HHHHHHHHHHHHHSHHHHHHCT-SSSEE CS
        OsmC   1 gdgsgpsPeelllaalasCfaitlravakkkgikledleveveaerdpegakgiteirlkvevkipgadseeklkkllekaekrCpvsntlkngvkvel 99 
                 g g++ +Pe+l++a++a+Cf+++lr va++++ ++++  v++e+   ++g     ++ +++ v++p  + +  +++l+e+a++ Cp+sn+ + +++v+l
  KIR62088.1  39 GAGGAANPEQLFAAGYAACFHSALRLVARRAKADVTGSVVDAEVGIGANGSG-GFGLAVTLVVDLPAVP-RPAAEQLVEQAHQVCPYSNATRGNIEVTL 135
                 67899*************************************9988877766.889**********999.69*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.29s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 1007.50
//
Query:       KIR62089.1  [L=250]
Description: hypothetical protein TK50_24100 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0016   19.0   0.0     0.0031   18.1   0.0    1.5  1  DUF2470   Protein of unknown function (DUF2470)


Domain annotation for each model (and alignments):
>> DUF2470  Protein of unknown function (DUF2470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.8e-07    0.0031      11      74 ..     170     235 ..     161     238 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.8e-07
                 H-HHHHHHHHHHCS...T-TTCCEEEEEEE-SSEEEEEE.C.....CEEEEEE-SS---SCCHHHHHH CS
     DUF2470  11 DHaddlllylrhyg...kvkeaksarmtdidldgltlrl.gakagsektvripFdpplkswaearerL 74 
                  H   +++y+r+         + ++r++ +d++gl ++l   +a  + + r++F++p+ + +e+   L
  KIR62089.1 170 HHGREMAAYVRRQLglvESGPDGPPRVVRVDRYGLLVSLgRPGA--RRRARLAFPRPVADHRELARLL 235
                 69999*****7766444222235559************863334..679***********99987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1802.28
//
Query:       KIR62090.1  [L=144]
Description: phosphoribosyl-AMP cyclohydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-34  116.1   0.4    5.9e-34  115.7   0.4    1.1  1  PRA-CH    Phosphoribosyl-AMP cyclohydrolase


Domain annotation for each model (and alignments):
>> PRA-CH  Phosphoribosyl-AMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.4   3.3e-38   5.9e-34       1      74 []      59     132 ..      59     132 .. 0.99

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 3.3e-38
                 EEEEE-HHHHHHHHHHSB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-SSTTSBSSS-- CS
      PRA-CH   1 mlaymnkealektletgkavyySrsrkklWkKGetSgnvqkvkeirlDcDqDalllkveqkgaaCHtgkesCFy 74 
                 m+a+m++eal++tl+tg a+y+Srsr+++W+KG+tSg++q+v+++ lDcD+Dall++v+q gaaCHtg+++CF+
  KIR62090.1  59 MVAWMDDEALHRTLTTGLATYWSRSRQEYWVKGATSGHLQHVRSVALDCDGDALLVSVDQVGAACHTGERTCFF 132
                 9************************************************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1217.61
//
Query:       KIR62091.1  [L=147]
Description: hypothetical protein TK50_24210 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1164.01
//
Query:       KIR62092.1  [L=118]
Description: hypothetical protein TK50_24290 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-06   27.8   0.0    3.1e-06   27.5   0.0    1.1  1  YCII      YCII-related domain
  ------ inclusion threshold ------
        0.1   12.8   0.0       0.13   12.5   0.0    1.3  1  MIase     Muconolactone delta-isomerase


Domain annotation for each model (and alignments):
>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   3.4e-10   3.1e-06      14      88 ..      25      97 ..      12     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 3.4e-10
                H..HHHHHHHHHHHHHHHHHHHTTGEEEE....EEEECSCSSSSCGGCEEEEEEEEEESSHHHHHHHHHT-HHHHTTEEEE CS
        YCII 14 l..eeraallaahlayleelkkeGvllaa....GpklvidGpfaetkeqlgGfyiveaadldeaieiaardPfveaGlvee 88
                l  e  ++l+a+h + +++l++ G +l+a    Gp    d p         Gf +++  + d +++++++dP+v+aGl+++
  KIR62092.1 25 LpaETVQRLQAEHTEHMRALQRRGIVLVAgsidGPGREPD-PP-------IGFGLARTGSVDDVRSVMEADPAVQAGLYAV 97
                2668999*******************99988887777777.44.......5***************************875 PP

>> MIase  Muconolactone delta-isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.4e-05      0.13      14      46 ..      24      56 ..      20     101 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
       MIase 14 dlpaeevaelkarekaraqelqrqGklvrlwrv 46
                 lpae+v++l+a++ +++++lqr+G +     +
  KIR62092.1 24 ALPAETVQRLQAEHTEHMRALQRRGIVLVAGSI 56
                689**********************99876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 846.50
//
Query:       KIR62093.1  [L=183]
Description: hypothetical protein TK50_24420 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-25   90.2   0.2    1.3e-25   89.9   0.2    1.0  1  Uma2      Putative restriction endonuclease


Domain annotation for each model (and alignments):
>> Uma2  Putative restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.2   7.3e-30   1.3e-25       2     149 ..      11     159 ..      10     179 .. 0.82

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 7.3e-30
                 HHHHHHHHSTTEEEEETTS-EEE.EETSHHHHHHHHHHHHHHHHHHHHH-SEEEEETT--EE-TTS-EE--SEEEEEHHHHTS-HHHHSS-SS--SEEE CS
        Uma2   2 eeflqlpeneevryelvdGeliemsplggeheriaalLaallgnwlrerklgrvfaselgvrlpeeserePDvavvrgeweresrriweelpaaPdlvv 100
                 e++ +lp  + +r+elvdG l + + ++  h++i+ +La+++ +++ e +l+  +   +gv l+ ++ r+PDv + r++ ++++      +p+++ l+v
  KIR62093.1  11 EDLPHLP-DDAPRVELVDGVLRVTPSPTLGHQDISLFLARWFLQHAPE-HLR--VTQAVGVALDAKNTRQPDVLLRRADVRADRSL---LQPEDVVLAV 102
                 7888889.99*************88888**************999888.333..4449*********************5555555...79******** PP

                 EE--TTS-.HHHHHHHHHHHHTT-SEEEEEETTTTEEEEE-TT...........S-- CS
        Uma2 101 EVlspsts.kdleeKlelYaalgvpeywlvdpkertvevfrledg.......eyqlv 149
                 EV+sp+t+  d+ +K ++Yaa+g+p yw ++++   v  +rl d+       +y+lv
  KIR62093.1 103 EVVSPGTRrIDRFAKPAEYAAAGIPFYWRIEQDPVHVYAYRLSDRlslggerQYELV 159
                 ******************************************976555544444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       184  (0.0102627); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1395.21
//
Query:       KIR62094.1  [L=272]
Description: SAM-dependent methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-18   66.3   0.1    5.7e-18   65.4   0.0    1.5  2  Methyltransf_11  Methyltransferase domain
    1.7e-17   63.9   0.1    3.2e-17   63.0   0.1    1.4  1  Methyltransf_25  Methyltransferase domain
    4.4e-12   45.8   0.0    6.2e-12   45.3   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    5.8e-09   35.9   0.0      8e-09   35.5   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    4.7e-07   30.5   0.0    7.7e-07   29.8   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
      2e-06   26.7   0.0    2.7e-06   26.2   0.0    1.1  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
    7.7e-06   25.8   0.0    1.3e-05   25.1   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    0.00052   19.6   0.3    0.00072   19.2   0.3    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
       0.03   13.8   0.0      0.041   13.3   0.0    1.1  1  adh_short        short chain dehydrogenase
       0.16   11.6   0.1       0.27   10.9   0.1    1.4  1  TPMT             Thiopurine S-methyltransferase (TPMT)


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0        10   1.8e+04      62      69 ..      47      54 ..      39      60 .. 0.79
   2 !   65.4   0.0   3.2e-21   5.7e-18       1      96 []      73     169 ..      73     169 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 10
                     EEEEEEES CS
  Methyltransf_11 62 fDlvvsse 69
                     +D+v++ e
       KIR62094.1 47 VDFVWCPE 54
                     89999976 PP

  == domain 2  score: 65.4 bits;  conditional E-value: 3.2e-21
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES.-CCC-CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvsse.vlhhvedpekalkeiaRvLkpgGl 93 
                      L+vG+G+ + a++la +ga+ v++Dls+ ml+ a ++a ++g++v +v+ada  lpf+d+ f   +  + ++ +v+d +++++e+ RvL+pgG+
       KIR62094.1  73 LEVGAGAAAAARWLATQGAHPVALDLSAGMLRHATDAAGRSGVRVPLVQADALALPFADAAFETAFTAFgAIPFVADSAAVMREVFRVLRPGGR 166
                      89************************************************************9988776699*********************9 PP

                      EEE CS
  Methyltransf_11  94 lvi 96 
                       v+
       KIR62094.1 167 WVF 169
                      876 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.1   1.8e-20   3.2e-17       1      97 []      72     165 ..      72     165 .. 0.96

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 1.8e-20
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEEST.GGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssga.lhhlsdedlekalkeiarvL 93 
                      vL++G+G    +++la+++  a+ +++D+s++ml++a   a ++g++v +vq+da +lpf+d+ f   + +++ + ++   d +++++e++rvL
       KIR62094.1  72 VLEVGAGAAAAARWLATQG--AHPVALDLSAGMLRHATDAAGRSGVRVPLVQADALALPFADAAFETAFTAFGaIPFVA--DSAAVMREVFRVL 161
                      9*****************5..*************************************************999899987..6679********* PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      +pgG
       KIR62094.1 162 RPGG 165
                      ***9 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   3.5e-15   6.2e-12      41     150 ..      62     168 ..      55     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 3.5e-15
                      HH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-.GGG-S-HH CS
  Ubie_methyltran  41 klvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfG.lrnvtDkl 133
                      +l +++ g++vl+v +G++  a  l+ +     + v lD+++ mL+ + + + ++g+ ++ ++qa+a +Lpf d +f++   +fG +  v+D  
       KIR62094.1  62 RLLGDLAGRRVLEVGAGAAAAARWLATQ---GAHPVALDLSAGMLRHATDAAGRSGV-RVPLVQADALALPFADAAFETAFTAFGaIPFVADSA 151
                      677889999*****99998877666543...4456899***********99999886.8*************************9667899*** PP

                      HHHHHHHHHEEEEEEEE CS
  Ubie_methyltran 134 kaLkeayrvlkpGGrlv 150
                       +++e++rvl+pGGr v
       KIR62094.1 152 AVMREVFRVLRPGGRWV 168
                      **************965 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   4.5e-12     8e-09       5     110 ..      70     170 ..      67     204 .. 0.91

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 4.5e-12
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsn.evlnaladpdkileei 97 
                       rvl++G+G+ + +  la    ++a+ v +D s+ ++++A+  a + g+ +v + q+d+ +l+  ++d+ f   ++  +++  +ad++++++e+
       KIR62094.1  70 RRVLEVGAGAAAAARWLA---TQGAHPVALDLSAGMLRHATDAAGRSGV-RVPLVQADALALP--FADAAFETAFTAfGAIPFVADSAAVMREV 157
                      68********99999999...4689************************.6************..********87654999************* PP

  Methyltransf_31  98 ervlkpggillie 110
                      +rvl+pgg+ + +
       KIR62094.1 158 FRVLRPGGRWVFS 170
                      ********98765 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   4.3e-10   7.7e-07       1      98 [.      73     166 ..      73     167 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 4.3e-10
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvv.asnvlhhlkdirevldnirklL 93 
                      Le+G+G ++ +r l+ +  +++ +++D+s+ ++ ++++  a r++ ++  v+ +al l   d   +f + + a++++  ++d ++v++++ ++L
       KIR62094.1  73 LEVGAGAAAAARWLATQ--GAHPVALDLSAGML-RHATDAAGRSGVRVPLVQADALALPFADA--AFETAFtAFGAIPFVADSAAVMREVFRVL 161
                      8****************..**************.99999999999999999999999887765..999987366******************** PP

  Methyltransf_12  94 kpgGr 98 
                      +pgGr
       KIR62094.1 162 RPGGR 166
                      ****7 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.5e-09   2.7e-06     119     220 ..      70     172 ..      58     178 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.5e-09
  Methyltransf_29 119 rtvlDvGCgvasfgayllsrdvltlslapkDe.heaqvqfaLeRgvpailavlgtkrlpyPsrsfdlihCsrCridwteedgilllevdRvlRp 211
                      r vl+vG g a+ +  l  ++   ++l       +     a   gv+  l    +  lp+  ++f+++  +   i++ ++ ++++ ev RvlRp
       KIR62094.1  70 RRVLEVGAGAAAAARWLATQGAHPVALDLSAGmLRHATDAAGRSGVRVPLVQADALALPFADAAFETAFTAFGAIPFVADSAAVMREVFRVLRP 163
                      789999999999999999999988888776551455556666779999999999999************************************* PP

  Methyltransf_29 212 gGyfvlsap 220
                      gG +v+s +
       KIR62094.1 164 GGRWVFSVT 172
                      ******975 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   7.4e-09   1.3e-05      14     120 ..      61     172 ..      49     234 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 7.4e-09
  Methyltransf_23  14 erllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.....kakkaqkdqfdeqeaaepqgkfdlI.vlrevlehvpdppel 101
                      +rll+ + ag rvL++G+G    ++ l+++g++ ++ Dls  +   a      +    + +q+d+   ++ ++ f+++ +++  +  v d +++
       KIR62094.1  61 ARLLG-DLAGRRVLEVGAGAAAAARWLATQGAHPVALDLSAGMLRHATdaagrSGVRVPLVQADALALPFADAAFETAfTAFGAIPFVADSAAV 153
                      66776.78899*****************************9999999888877555555555555566667778887746777888888***** PP

  Methyltransf_23 102 lrqiatllkpgGylllsep 120
                      +r +++ l+pgG+ ++s+ 
       KIR62094.1 154 MREVFRVLRPGGRWVFSVT 172
                      ***********99988874 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.3     4e-07   0.00072       7      82 ..      79     156 ..      76     163 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 4e-07
                   HHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG CS
  adh_short_C2   7 GraiAkalaeeGaevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapk 82 
                   ++a+A+ la +Ga+ v+ dl+    ++++++a + g +v  +++D+      +a++e++   fg + ++  +a+++++
    KIR62094.1  79 AAAAARWLATQGAHPVALDLSAGMLRHATDAAGRSGVRVplVQADALALPFADAAFETAFTAFGAIPFVADSAAVMRE 156
                   6799********************88888999999988777**********************************987 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.3e-05     0.041      14      88 ..      80     154 ..      72     163 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS CS
   adh_short  14 raiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGit 88 
                  a a+ la++Ga+ v++d s+  l+++ +  ++ g ++  +q+D      ++a++e+a   +g +  +   A++ 
  KIR62094.1  80 AAAARWLATQGAHPVALDLSAGMLRHATDAAGRSGVRVPLVQADALALPFADAAFETAFTAFGAIPFVADSAAVM 154
                 467888***********************************************************9999999884 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00015      0.27      36      78 ..      67     109 ..      61     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
                 S--EEEEEET-TT-HHHHHH-BTTEEEEEE-S-HHHHHHHHHH CS
        TPMT  36 kaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvekffee 78 
                  ag rvl  + G a  + wlA qg + v+++ls   ++++ + 
  KIR62094.1  67 LAGRRVLEVGAGAAAAARWLATQGAHPVALDLSAGMLRHATDA 109
                 5678999999***********************9888886554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1967.90
//
Query:       KIR62095.1  [L=97]
Description: antibiotic biosynthesis monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-13   49.7   0.2    3.7e-13   49.4   0.2    1.1  1  ABM       Antibiotic biosynthesis monooxygenase
  ------ inclusion threshold ------
      0.057   13.7   0.1      0.093   13.0   0.1    1.3  1  NIPSNAP   NIPSNAP


Domain annotation for each model (and alignments):
>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.2   4.1e-17   3.7e-13       1      76 [.       1      76 [.       1      78 [. 0.92

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 4.1e-17
                CEEEEEEEEESTTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEETSTTEEEEEEEESSHHH.HHHHHTSHHHHHHH CS
         ABM  1 mviviaeirvkpgqaeafldafaeavesllaeepGclgyellrstedpdevvvieeWeseaa.leahlksphfkaah 76
                mv  +a i v pg++++f++a+a+ +e +la  pGc+++++ r  e p+++v++ eW+s aa  e++++++ f++++
  KIR62095.1  1 MVLEVALIDVTPGHEDDFAAAYARGHE-ILAGTPGCRSVRMTRGVESPTRFVLLVEWDSVAAhEENFRETERFQQWR 76
                89999**********************.669****************************777257899999999997 PP

>> NIPSNAP  NIPSNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     1e-05     0.093       8      78 ..      10      79 ..       4      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1e-05
                E-TT-HHHHHHHHHHTHHHHHHHHH--EEEEEEEEESBSSEEEEEEEES-HHHHHHHHHHHHH-HHHHHHH CS
     NIPSNAP  8 lkpgklaeflerfareiiaiqekhggeliGyfaseiGalnqvlhlwaydslaarearraalaadpeweaav 78
                + pg + +f++++ar+++ +    g + +  ++  + + ++++ l+ +ds aa+e+   +  + ++w+a +
  KIR62095.1 10 VTPGHEDDFAAAYARGHEILAGTPGCRSVR-MTRGVESPTRFVLLVEWDSVAAHEENFRETERFQQWRALI 79
                679999999999999888777766666665.56689999*****************999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 759.88
//
Query:       KIR62096.1  [L=315]
Description: glycoside hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-13   49.5   0.0    5.1e-13   49.0   0.0    1.2  1  NLPC_P60  NlpC/P60 family
    7.5e-07   28.9   3.1    8.5e-05   22.3   1.0    3.4  2  SH3_16    Bacterial dipeptidyl-peptidase Sh3 domain


Domain annotation for each model (and alignments):
>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   5.7e-17   5.1e-13       3      74 ..     206     282 ..     204     307 .. 0.83

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 5.7e-17
                 BB-TT--BTTEB-HHHHHHHHHHTTT----SSHHHHCCCSEE..EEGGG--TTEEEEESG.TGGESEEEEEE......E CS
    NLPC_P60   3 pYrwGGkspsgfDCsglvryafakagielprssgeqeaagkkkeiskselkrGDLvffkt.kkgisHvgiYl......g 74 
                  Y+wGG s  g+DCsglv  a++++g+ lpr++ +q  ag  +  +    + GDL ff+  + +i+H+g          
  KIR62096.1 206 AYVWGGVSAYGIDCSGLVHLAWRRFGVVLPRDAADQ--AGATTPLPLGTERVGDLYFFARpGRQIHHIGFVSaapdgdA 282
                 7***********************************..555556***************99*******97555555544 PP

>> SH3_16  Bacterial dipeptidyl-peptidase Sh3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   1.0   9.5e-09   8.5e-05      12      48 .]      58     103 ..      53     103 .. 0.80
   2 !    3.7   0.0    0.0061        55       1      46 [.     134     180 ..     134     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 9.5e-09
                 EEE-TT-EEEEEEEE.ETE........EEEEETTT--EEEEEGGGG CS
      SH3_16  12 TQalaGrhlrvleea.dgw........awVqlceDgYvGWlplsdL 48 
                 +Q+l+G+++ v+  + dgw           +l   gY+GWlp+++L
  KIR62096.1  58 SQLLLGERVLVTALRpDGWahvvaveqPAARLDPRGYPGWLPAAQL 103
                 8************888***4444444433478889********998 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0061
                 EESSTT--SEEEEE-TT-EEEEEEEE.ETEEEEEETTT--EEEEEGG CS
      SH3_16   1 LydsPdcaelaTQalaGrhlrvleea.dgwawVqlceDgYvGWlpls 46 
                 L+++P++ + +  +++G++l++   + dgw  V +   + + Wlp +
  KIR62096.1 134 LHAAPAGEPVVAGVILGTRLTLAGPPvDGWRPVHAPGQDRPLWLPDA 180
                 6789999999999*****************88877666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2606.99
//
Query:       KIR62097.1  [L=472]
Description: phospholipid phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      8e-14   52.2   5.9      8e-14   52.2   5.9    4.3  4  SNARE_assoc  SNARE associated Golgi protein
  ------ inclusion threshold ------
      0.021   14.4   3.4       0.43   10.3   0.1    3.2  3  Crp          Bacterial regulatory proteins, crp family
        1.1    9.7   6.7        1.1    9.7   0.1    3.9  3  HRG          Haem-transporter, endosomal/lysosomal, haem-resp
        9.4    6.0  24.3      0.028   14.2   8.1    3.1  3  PAP2         PAP2 superfamily


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   5.9   1.8e-17     8e-14       1     119 [.      36     161 ..      36     162 .. 0.88
   2 !    6.9   7.2    0.0019       8.6      15     109 ..     175     268 ..     167     276 .. 0.68
   3 ?   -1.4   1.5      0.69   3.1e+03      15      30 ..     397     412 ..     349     416 .. 0.71
   4 ?   -2.4   1.1       1.4   6.3e+03      17      17 ..     428     428 ..     399     453 .. 0.47

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 1.8e-17
  SNARE_assoc   1 lPsevllvaaGvlf.....glllgtlvtslgallGaslayllgrylgr....kalrrkllsekrvkalerlverygflallllrllpivPrdlvnyva 89 
                  +P+e+ l+++G+l       l  ++lv +++a+ G++la+ +gr++g+    + +  + + ++r +++++l+er g + +l++r++++  r+l++ +a
   KIR62097.1  36 VPGEATLLLVGFLTytgalRLGPALLVMIVAAVTGDTLAFRAGRRYGPrlraS-GFGARVGPHRWRRADALLERLGGRGVLTARWVAFA-RTLAPRLA 131
                  69999999999999675554445*************************99744.4444557777788********************98.******** PP

  SNARE_assoc  90 GltrvsfkrFflatfiGsipwalvyaylGs 119
                  G+++++++rF+ ++++G + w+   +++G 
   KIR62097.1 132 GAAGMPYRRFAPWNLAGVVTWVGGSVLAGN 161
                  *********************999888885 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0019
  SNARE_assoc  15 glllgtlvtslgallGaslayllgrylgr.....kalrrkllsekrvkalerlverygf.lallllrllpivPrdlvnyvaGltrvsfkrFflatfiG 106
                  g  +g ++++lg +l+     l+gr+lgr     +al  ++    ++++   l  ryg+ ++ll +r+ p+  + l+n++aGl  + ++  ++a ++G
   KIR62097.1 175 GRATGAVLVLLGGVLAV---VLVGRWLGRhpdpaRALLARAAALPPLRW---LAARYGVlFFLLAMRVGPGW-TLLINLAAGLVLLFVAGVAIAWLLG 265
                  55555555555555544...46799999955445555555555555555...4455555388999******9.**********988888888887777 PP

  SNARE_assoc 107 sip 109
                  +++
   KIR62097.1 266 AAM 268
                  765 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.69
  SNARE_assoc  15 glllgtlvtslgallG 30 
                  +++ +t++++++a +G
   KIR62097.1 397 SPWPVTVAAWTAAAAG 412
                  5677777777777666 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.4
  SNARE_assoc  17 l 17 
                   
   KIR62097.1 428 A 428
                  1 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   9.6e-05      0.43      10      25 ..     161     176 ..     160     176 .. 0.84
   2 ?   -1.4   0.0      0.42   1.9e+03      14      25 ..     189     200 ..     189     200 .. 0.87
   3 ?    2.9   0.3     0.019        87      12      21 ..     295     304 ..     293     305 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.6e-05
                 HHHTS-HHHHHHHHHH CS
         Crp  10 dylGlTrETVSRlLtr 25 
                 ++ G + ETVSRlL+r
  KIR62097.1 161 NLAGESYETVSRLLGR 176
                 6667889********8 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.42
                 S-HHHHHHHHHH CS
         Crp  14 lTrETVSRlLtr 25 
                 l+++ V+R L+r
  KIR62097.1 189 LAVVLVGRWLGR 200
                 68889*****98 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.019
                 HTS-HHHHHH CS
         Crp  12 lGlTrETVSR 21 
                 ++lT+++VSR
  KIR62097.1 295 VALTVVSVSR 304
                 68*******9 PP

>> HRG  Haem-transporter, endosomal/lysosomal, haem-responsive gene
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.1   4.9e+03      20      28 ..      15      23 ..       7      34 .. 0.82
   2 ?    0.1   0.8      0.24   1.1e+03      12      31 ..     242     261 ..     238     281 .. 0.79
   3 ?    9.7   0.1   0.00026       1.1       7      33 ..     430     456 ..     427     464 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.1
         HRG 20 lvylvlaiv 28
                lvylv+a++
  KIR62097.1 15 LVYLVAAAI 23
                799999876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.24
         HRG  12 silglsaflvylvlaivnkq 31 
                 +++ l+a lv l++a+v + 
  KIR62097.1 242 LLINLAAGLVLLFVAGVAIA 261
                 67888999999999988665 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00026
         HRG   7 ygifgsilglsaflvylvlaivnkqgv 33 
                  +i+ ++lg+++ + ++v+++++ ++v
  KIR62097.1 430 STITSVLLGVAWTALFMVAWATRDRAV 456
                 58999*****************98766 PP

>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   4.8      0.21   9.5e+02      83     118 ..     240     284 ..     206     285 .. 0.76
   2 ?   -2.6   0.1      0.93   4.2e+03      83      83 ..     325     325 ..     305     369 .. 0.44
   3 ?   14.2   8.1   6.2e-06     0.028      61     133 ..     380     451 ..     375     454 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.21
        PAP2  83 g.........lvllalillllavlvalsRlylgvHflsDvlaGll 118
                 +         lvll++  ++ a+l +++  + g   + D +aG++
  KIR62097.1 240 WtllinlaagLVLLFVAGVAIAWLLGAAMRWSGLAVVDDAIAGWF 284
                 133345666789999999999999****99************997 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.93
        PAP2  83 g 83 
                  
  KIR62097.1 325 P 325
                 2 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 6.2e-06
        PAP2  61 safafalalllalllrrkrkkiglvllalillllavlvalsRlylgvHflsDvlaGlliGialaalayrlvqk 133
                 +++a++l++l++ll r   +++ +v++++ +++ ++ ++ +Rlylg  + s +++++l+G+a++al++  + +
  KIR62097.1 380 AVMAASLCTLAWLLSRGSPWPV-TVAAWTAAAAGVAAIGGARLYLGQGTASSTITSVLLGVAWTALFMVAWAT 451
                 6788999999999999999995.666667777788999***************************99877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3119.08
//
Query:       KIR62098.1  [L=436]
Description: endonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-09   35.4   0.0    2.2e-08   34.1   0.0    1.6  2  Jacalin        Jacalin-like lectin domain
    1.1e-07   31.7   0.1    6.8e-07   29.0   0.1    2.1  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Jacalin  Jacalin-like lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.47   4.2e+03      97     131 ..     302     337 ..     296     339 .. 0.69
   2 !   34.1   0.0   2.5e-12   2.2e-08      43     131 ..     345     430 ..     336     432 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.47
                 C.--SEEEE.EE-SSEEEEEEEEEESSSEEEEEEEE CS
     Jacalin  97 gtksgtkfs.leekgkkivGFhGragnllnalGvyf 131
                 g ++gt f+ l   g ++  +  rag+ l+++Gv  
  KIR62098.1 302 GGPHGTPFTdLDAVGPRVTAVSLRAGSRLDQIGVRL 337
                 446667765244477788888889999999999975 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 2.5e-12
                 EEEEETTBSEEEEEETT.T--EEEEEEEEEEESSSEEEEEEEEEEETTS-EEEEEC.--SEEEEEE-.SSEEEEEEEEEESSSEEEEEEEE CS
     Jacalin  43 hGkkgllgteefeidyp.dEyitsVegtydkvsvesevitsLtfkTnkgrtselfgtksgtkfslee.kgkkivGFhGragnllnalGvyf 131
                 hG  g    ++ +++++  Ey+ +V  t  k ++  + i s +++Tn grt   +gt++  ++++   +g+++ GF+Gr+g+ +++lGv +
  KIR62098.1 345 HGGTG---GTPATLTLAdGEYVDQVTLTQGKKDG-RTRIFSARLTTNLGRTL-AGGTPTADAVTFTApSGGRLAGFFGRSGSEVDQLGVLW 430
                 44444...45666666668**********99655.899*************9.888899999999999*************99*****987 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   7.6e-11   6.8e-07       1     210 [.      34     256 ..      34     434 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 7.6e-11
                    EEEEESTG......CHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCHECSSSTTSSEEEEEECSTE...EEEE CS
                    xxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxx RF
  Exo_endo_phos   1 ltwNvngq......aspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllalggflgasstsptgggggggnggavlsrfpl...tslf 87 
                    lt+Nv g       ++pa++    ++ + + +  y  D++ +QE  ++++++ ++      +++a     t gg   g+g+ ++s++p+    ++ 
     KIR62098.1  34 LTYNVAGLpeplssGNPATN----TRPIGERVNGY--DIVHVQEDFNYHADLYATDR--HPYRTA-----TSGGVPFGDGLNTMSNYPVsdfVRVR 116
                    7******9999998777777....77799999888..*******6666655544444..344444.....45899**************7665555 PP

                    EEEEEETSSSSGCEEEEEEEEEEEEEEE.......CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  88 rrtfiefndlvaalrreplaakleqlni.......ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap 176
                     +++ ++++l   + ++  ++  e +++       + + d+++   ++  +++l +    +  g  vivaGD+N+r +  + + ++  ++    ++
     KIR62098.1 117 WDDCHGTDCLTPKGFSRSRIRLAEGVYVdfydvhtNAGSDEPDLAARRSNIDQLSAYVQANSAGNAVIVAGDLNVRYTRTGDNIRDLVAANGLTDV 212
                    5566666666666666666666666666*****9999999999999999999999999999999***********555544444333333333333 PP

                    H......SSCESCETTTTTTTTTTT...EB-BEEEEEEC.HHHC CS
                    x......xxxxxxxxxxxxxxxxxx...xxxxxxxxxxx.xxxx RF
  Exo_endo_phos 177 v......glyllgggptptyvtrag...gsrlDrilasp.alal 210
                    +      g  +  g+p+ t+ + +    +  +D il+++ +l  
     KIR62098.1 213 WvqqergGVPPAAGSPALTCDPANVtnaCEVVDKILYRGnRLID 256
                    25677888888888888888876541115677999999755444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.51
# Mc/sec: 2547.81
//
Query:       KIR62099.1  [L=282]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.7e-12   45.1   7.1    9.5e-11   41.9   1.1    2.8  3  HTH_31          Helix-turn-helix domain
     0.0022   18.0   0.0     0.0072   16.4   0.0    1.9  2  HTH_3           Helix-turn-helix
  ------ inclusion threshold ------
      0.015   15.3   0.0       0.04   14.0   0.0    1.7  1  HTH_19          Helix-turn-helix domain
      0.037   14.2   0.1       0.23   11.7   0.1    2.0  2  Death           Death domain
      0.091   12.8   0.4        5.1    7.1   0.1    2.4  2  DUF3071         Protein of unknown function (DUF3071)
       0.12   12.0   0.0       0.28   10.8   0.0    1.8  1  Acetyltransf_8  Acetyltransferase (GNAT) domain
        1.9    8.4   5.8        2.7    7.9   0.5    3.1  3  HTH_23          Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   1.1   3.7e-14   9.5e-11       1      64 []      13      75 ..      13      75 .. 0.96
   2 ?   -2.0   0.0       1.8   4.7e+03       2      12 ..      75      85 ..      74      90 .. 0.78
   3 !    6.0   0.1     0.006        15      19      61 ..     146     202 ..     143     205 .. 0.76

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 3.7e-14
      HTH_31  1 aLGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerael 64
                +L ++Lr+lR r G + e+vA++lg+ ++++ r E G   r+ p +l  l+++++++++er+ l
  KIR62099.1 13 RLRRELRRLRDRTGRTAEDVAKLLGWHRTKIIRFELGHS-RVMPKDLPPLLDLYDASEEERESL 75
                57899**********************************.8********************976 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.8
      HTH_31  2 LGalLralRer 12
                L alLr+ R++
  KIR62099.1 75 LTALLRQSRQK 85
                66899999975 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.006
      HTH_31  19 evAerlg................vsestlsrlEqGrrgrpspavlealaralgldpaer 61 
                  vA+rlg                + e+ ++r+  G   ++  a++++l +a+gl+  e 
  KIR62099.1 146 RVAARLGrkallsrdvpprlwmvLDEAAVRRVVGGPK-VM-QAQIARLIEACGLPTVEI 202
                 4666666666666677777777778888888888888.35.99***********98775 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.8e-06    0.0072       1      48 [.      18      65 ..      18      71 .. 0.85
   2 ?   -2.5   0.0       2.2   5.6e+03      41      54 ..     188     201 ..     185     202 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.8e-06
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaL 48
                l++lR+  g + e++A++lG +r+ i r E G+++  ++ l  l++ +
  KIR62099.1 18 LRRLRDRTGRTAEDVAKLLGWHRTKIIRFELGHSRVMPKDLPPLLDLY 65
                899*****************************9988877776555555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.2
                 HHHHHHHHTSEHHH CS
       HTH_3  41 lkklakaLgvslde 54 
                 + +l +a+g+++ e
  KIR62099.1 188 IARLIEACGLPTVE 201
                 56788888888766 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.5e-05      0.04       4      42 ..      18      59 ..      16      81 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
      HTH_19  4 LkeaReelgltqeelaerlgisrskisaiEng.kkdvps..a 42
                L+++R   g t e++a+ lg  r+ki+ +E g ++ +p+  +
  KIR62099.1 18 LRRLRDRTGRTAEDVAKLLGWHRTKIIRFELGhSRVMPKdlP 59
                9*******************************8664554432 PP

>> Death  Death domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   8.9e-05      0.23       2      72 ..      16      84 ..      15      86 .. 0.93
   2 ?   -0.1   0.0      0.42   1.1e+03       5      33 ..     175     203 ..     171     205 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.9e-05
                HHHHHHHCCSTCCSCCHHHHHHHTTSHHHHHHHHHHSS.STHHHHHHHHHHHHHHHHTTTCSHHHHHHHHHH CS
       Death  2 krlarildhpdplgkdWkelarkLglseeeidrieken.nslrsqsyalLqlWedregenatvgtLleaLrk 72
                ++l r++d    +g+  + +a+ Lg  +++i r+e  + + +++ +  lL+l+ ++e e  ++  Ll+ +r+
  KIR62099.1 16 RELRRLRDR---TGRTAEDVAKLLGWHRTKIIRFELGHsRVMPKDLPPLLDLYDASEEERESLTALLRQSRQ 84
                7899*****...*********************************************999999999987765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.42
                 HHHHCCSTCCSCCHHHHHHHTTSHHHHHH CS
       Death   5 arildhpdplgkdWkelarkLglseeeid 33 
                  r++  p+ ++++ ++l +  gl+  ei+
  KIR62099.1 175 RRVVGGPKVMQAQIARLIEACGLPTVEIQ 203
                 67888899999999999999999998886 PP

>> DUF3071  Protein of unknown function (DUF3071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1     0.002       5.1      64      87 ..      24      47 ..      10      49 .. 0.92
   2 ?    3.3   0.0     0.029        74       6      40 ..     233     268 ..     230     280 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.002
     DUF3071 64 RaGasveevaeeagvsververya 87
                R G ++e+va+ +g++  ++ r++
  KIR62099.1 24 RTGRTAEDVAKLLGWHRTKIIRFE 47
                99********************98 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.029
     DUF3071   6 lvglesdgeslvleae.egeefflavddeLraalre 40 
                 +v l++d++ l+le+e +  +++l  d  + +al+ 
  KIR62099.1 233 VVYLDNDSSTLLLEEErHVARYRLMFDHLMAKALDP 268
                 7899**********965999*******999988765 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.28     107     137 ..     167     197 ..     124     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
                     HHHCCTT--EEEE--BTT-HHHHHHHHHTT- CS
  Acetyltransf_8 107 ylfadprtrrvvvEPdvrNerairllekaGf 137
                     +++++ ++rrvv+ P+v  +++ rl+e++G 
      KIR62099.1 167 MVLDEAAVRRVVGGPKVMQAQIARLIEACGL 197
                     455666***********************97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.5    0.0011       2.7      13      34 ..      20      43 ..      10      47 .. 0.80
   2 ?    1.6   0.1       0.1   2.6e+02      15      29 ..     139     153 ..     128     155 .. 0.84
   3 ?   -1.3   0.1      0.84   2.2e+03       8      23 ..     186     202 ..     182     204 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0011
      HTH_23 13 llae..GlsvreIAreLgvsrrTv 34
                 l++  G + +++A++Lg++r  +
  KIR62099.1 20 RLRDrtGRTAEDVAKLLGWHRTKI 43
                444459**************9876 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.1
      HTH_23  15 aeGlsvreIAreLgv 29 
                 ++  + r++A++Lg+
  KIR62099.1 139 DQDETDRRVAARLGR 153
                 45789********97 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.84
      HTH_23   8 lrillllae.GlsvreI 23 
                 ++i++l    Gl++ eI
  KIR62099.1 186 AQIARLIEAcGLPTVEI 202
                 78888888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2020.50
//
Query:       KIR62100.1  [L=298]
Description: glmZ(sRNA)-inactivating NTPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.4e-103  344.9   0.0   3.8e-103  344.7   0.0    1.0  1  ATP_bind_2       P-loop ATPase protein family
    1.2e-05   25.9   0.2    0.00058   20.4   0.2    2.6  1  AAA_18           AAA domain
     0.0016   18.7   0.0     0.0044   17.3   0.0    1.8  2  AAA_28           AAA domain
     0.0052   16.7   0.6       0.67    9.8   0.1    2.3  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
  ------ inclusion threshold ------
      0.065   12.9   0.2       0.15   11.7   0.0    1.7  2  CoaE             Dephospho-CoA kinase
      0.086   13.2   0.1       0.19   12.1   0.1    1.5  1  SO_alpha_A3      Sarcosine oxidase A3 domain
       0.15   12.4   2.3       0.45   10.9   2.3    2.1  1  AAA_16           AAA ATPase domain
       0.15   12.2   3.8         25    5.0   3.8    3.0  1  AAA_33           AAA domain
       0.16   12.2   0.0       0.39   11.0   0.0    1.7  1  DUF1884          Domain of unknown function (DUF1884)


Domain annotation for each model (and alignments):
>> ATP_bind_2  P-loop ATPase protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.7   0.0  1.9e-106  3.8e-103       2     284 .]      16     298 .]      15     298 .] 0.99

  Alignments for each domain:
  == domain 1  score: 344.7 bits;  conditional E-value: 1.9e-106
                 EEEEEEESTTSSHHHHHHHHHHHTXEEEBSXXGGGHHHHHHHHH...TTTXXEEEEESTTTSXSSHHHHHHHHHTSXTTSEEEEEEEEXXHHHHHHHCT CS
  ATP_bind_2   2 elvivsGlsGaGksvalraledlGyyvvdnlPlsllpklvdllkeansreskvavvldvrnreesaelleqaeellekaitprilfleadddtlvrrye 100
                 +lv+v+G+sG G+s+ +rale++GyyvvdnlP  l+ ++++l  +a+    + a+vldvr+r +s++l  +  el ++ ++pr++f++add++l+rr+e
  KIR62100.1  16 TLVVVTGVSGGGRSTVARALENVGYYVVDNLPQALMLDMAELAVKAGGAARRTAMVLDVRSRAFSTDLAGAIRELKDRGFSPRVVFVDADDEVLIRRFE 114
                 589************************************************************************************************ PP

                 SSSXSSTTSXXXSSHHHHHHHHHHTHHHHHTXSEEEECTTXXHHHHHHHHHHHHHXXXSSS-EEEEEEEEGGG---TT-SEEEE-TTS--GGGSTTTTT CS
  ATP_bind_2 101 dtrrshPlsakdlslegiakerelleplraradlildtselsvrelreklrkalagnsekeltvvvesfGfkyGiPldadlvfdvrflPnPhwveelrP 199
                   rrshPl++++ +++gia er lle+ r +ad+i+dts+l+v++lr ++++ ++g++ + l+++v sfGfkyG+P dad+v+d rflPnP+wv+elr 
  KIR62100.1 115 SVRRSHPLQGEGRLADGIAVERGLLEEARDQADVIIDTSHLNVNQLRRRIEELFGGEDARRLRITVLSFGFKYGLPPDADFVLDARFLPNPYWVPELRE 213
                 *************************************************************************************************** PP

                 S-TTSHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHSS-SEEEEEEEESSSSSHHHHHHHHHHHHHHHTT-EEEEEETTTTTX CS
  ATP_bind_2 200 ltGkdkevaeyvlkrtevaefieklrsllslvlpslkregksyltiaiGctGGkhrsvaiaeqladyfrsdgktvvarhrdlekr 284
                  tG++++v++yvl +++++ f+ ++ +l++    +++regk+ylt+a+GctGGkhrsvaiae+la  +r+ g   +a+hrdl+++
  KIR62100.1 214 HTGREEAVSAYVLGQEGADAFVGTYADLVNATTVGFEREGKRYLTVAVGCTGGKHRSVAIAEELAARLRHAGLAANAQHRDLGRE 298
                 **********************************************************************************996 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   2.9e-07   0.00058       1     113 [.      18     116 ..      18     130 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.9e-07
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe.aldeskrldedkldklldaleenssaleegknlvidghlaeleseaakdikkvv 98 
                 +++tG++G G +t+a++L++    g+ + d++++  +l++ + + +     r   ++ld+ ++a+              + g + el +  +  ++ v+
  KIR62100.1  18 VVVTGVSGGGRSTVARALENV---GYYVVDNLPQALMLDMAELAvKAGGAARRTAMVLDVRSRAFSTD-----------LAGAIRELKDRGFSPRV-VF 101
                 79****************666...88888888888777777777433333333334444444444443...........56777777777777777.99 PP

      AAA_18  99 LtaspeelleRlekR 113
                 ++a++e+l++R+e  
  KIR62100.1 102 VDADDEVLIRRFESV 116
                 **********99975 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.2e-06    0.0044       2      79 ..      18     103 ..      17     108 .. 0.64
   2 ?   -3.7   0.0       6.2   1.2e+04      52      66 ..     131     145 ..     123     156 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.2e-06
      AAA_28   2 ivitGgestGKTtlleaLaargypvv...pEaareileekl......akgedalpwvedllafaervleeqleeeaaa.aankvlfcD 79 
                 +v+tG +++G +t+++aL++ gy vv   p a    + e++      a+++ +  +v +  af    l+ +++e++++  +++v+f+D
  KIR62100.1  18 VVVTGVSGGGRSTVARALENVGYYVVdnlPQALMLDMAELAvkaggaARRTAMVLDV-RSRAFSTD-LAGAIRELKDRgFSPRVVFVD 103
                 8********************999884443333222223332111122222222233.77777776.777888888885588888888 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6.2
      AAA_28  52 llafaervleeqlee 66 
                  +a+++++lee++ +
  KIR62100.1 131 GIAVERGLLEEARDQ 145
                 555666666555433 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   0.00034      0.67      30     100 ..      36     108 ..      10     115 .. 0.79
   2 !    5.2   0.0    0.0083        17      32      71 ..     257     296 ..     232     298 .] 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00034
  Glyco_tranf_2_3  30 prvevvvvvdesdaetlevaeelaaalp.dvrvrvvvnarnlgstgksralnealravk....sdlvllvDdDtvv 100
                       +v ++vv++  +a  l++ae la + + ++r r++ +  + +s+++s+ l++a+r  k    s  v++vD+D+ v
       KIR62100.1  36 ENVGYYVVDNLPQALMLDMAE-LAVKAGgAAR-RTAMV-LDVRSRAFSTDLAGAIRELKdrgfSPRVVFVDADDEV 108
                      456778888888888899886.5666662555.66655.55899*************99666677********976 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0083
  Glyco_tranf_2_3  32 vevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlg 71 
                      + v+v+++++++  ++ aeelaa+l ++++    + r+lg
       KIR62100.1 257 LTVAVGCTGGKHRSVAIAEELAARLRHAGLAANAQHRDLG 296
                      7799***********************9998766666666 PP

>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.7e-05      0.15       2      30 ..      17      45 ..      16      58 .. 0.92
   2 ?   -2.2   0.0       1.5   2.9e+03     124     139 ..      98     113 ..      93     163 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.7e-05
                EEEEEESTTSSHHHHHHHHHHTT-EEEEH CS
        CoaE  2 ivgltGgiasGKstvanlfadlgvpivDa 30
                +v +tG  + G+stva++++++g+++vD 
  KIR62100.1 17 LVVVTGVSGGGRSTVARALENVGYYVVDN 45
                57899**********************95 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
                 EEEEEE--HHHHHHHH CS
        CoaE 124 rvlvvdvelelqveRl 139
                 rv+ vd++ e  ++R 
  KIR62100.1  98 RVVFVDADDEVLIRRF 113
                 5666666666666664 PP

>> SO_alpha_A3  Sarcosine oxidase A3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   9.3e-05      0.19      13      60 ..     237     282 ..     234     293 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.3e-05
  SO_alpha_A3  13 tvkdielavregfesiehvKRYttlgmgtdQgklsavnaaaivaeltg 60 
                  t +d+ +a++ gfe+    KRY t+++g   gk+ +v+ a+ +a+  +
   KIR62100.1 237 TYADLVNATTVGFER--EGKRYLTVAVGCTGGKHRSVAIAEELAARLR 282
                  6799*********97..67******************99877766544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.3   0.00022      0.45      15      46 ..       6      37 ..       2     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00022
      AAA_16 15 alervrsgrpelvllsGesGvGKsslvrellr 46
                a +++ ++++ lv+++G sG G s+++r+l +
  KIR62100.1  6 ATRAATESETTLVVVTGVSGGGRSTVARALEN 37
                5567778888*****************99874 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   3.8     0.013        25       1      30 [.      17      45 ..      17     181 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.013
      AAA_33  1 lvllvGlpGsGKstlaerllkklgavllss 30
                lv++ G++G G st+a+ l  + g+++++ 
  KIR62100.1 17 LVVVTGVSGGGRSTVARALE-NVGYYVVDN 45
                78899999999999999876.666555543 PP

>> DUF1884  Domain of unknown function (DUF1884)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0002      0.39      14      88 ..      86     164 ..      79     167 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0002
                 HHHHHHHTT----EEEE-HH..HHHHHHHHHH..HHHT------EETTEEEEE-GGGTTEE.EEE-TTTTTTSTT-EEEE CS
     DUF1884  14 kineLkleGfePdiiLvGke..aieflkealk..keleeeeevtelsnlkveileeLGgDa.vvvDskvLGqikkaakri 88 
                 +i+eLk+ Gf P +++v  +  ++    e+++  + l++e+ + + + +    lee    a v++D+  L   ++  +ri
  KIR62100.1  86 AIRELKDRGFSPRVVFVDADdeVLIRRFESVRrsHPLQGEGRLADGIAVERGLLEEARDQAdVIIDTSHLNV-NQLRRRI 164
                 799************99764113322335555115689999999999999999***988776999*999864.3355555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2141.97
//
Query:       KIR62101.1  [L=321]
Description: hypothetical protein TK50_24605 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-62  210.4   0.0      4e-62  210.1   0.0    1.0  1  UPF0052   Uncharacterised protein family UPF0052


Domain annotation for each model (and alignments):
>> UPF0052  Uncharacterised protein family UPF0052
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.1   0.0   2.2e-66     4e-62       2     258 ..       2     273 ..       1     293 [. 0.92

  Alignments for each domain:
  == domain 1  score: 210.1 bits;  conditional E-value: 2.2e-66
                 EEEE-CHHHHHHHHHHCCSS....CEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH--S-C...HHHHHCH-B-SS........SSSSTT-BH CS
     UPF0052   2 vvlgGGtGlskllrglkevt....aeltavvtvaDdggssGelrrelgllaigDirnvlvalidder...lleeLfqyRfkg........dgdlaghsl 85 
                 v++gGG+Gls  lr+l++       ++tavvtv+DdggssG+lr + g+l++gD+r+ lval+ d++     + Lfq+Rf++        d+ lagh++
  KIR62101.1   2 VAFGGGHGLSVSLRALRRCVpeldLDITAVVTVGDDGGSSGRLRARRGGLPPGDLRQALVALAGDHPatrRTAGLFQHRFADtpgdpvgtDDGLAGHAV 100
                 9****************999888899************************************888883335566****************99******* PP

                 HHHHHHHHHHHHS-HHHHHHHHHHHTT-SSEEEES-SS--EEEEEETTS-E.........EESTTTGGGG-S...-EEEEEEESTT----HHHHHHHHH CS
     UPF0052  86 gnllLaalaeltgsleeaiealskilkvrgrvlPatddpvelsaeledGee.........itgeskisearklkapikrvflepegaeaapevleaike 175
                 gnl+L++l el g+  +a+e + ++l++ grvlP++ +pv + a++  G           ++g+++++ ++    +++++ l+p+ + a  e+++a +e
  KIR62101.1 101 GNLVLCGLIELLGDPVAALEHAGAMLGAVGRVLPMSRQPVGIEARV-RGADpaypdevrtVRGQHQVAVTGG---RVESLRLTPTTPAACAEAVAATAE 195
                 **********************************************.3333466666666*******88888...************************ PP

                 -SEEEE-SS-IIIIIHHHHTSCCHHHHHHH-SSEEEEE--SB--TTTSTT-BHHHHHHHHHHCH-SS....S-SEEEEE-S-- CS
     UPF0052 176 AdlivlgpGslytSiiPiLlvpgiaealreskakkvlvsnimtqkGetdgfsvsdhvkaieravgkgvakayvdavlvntsev 258
                 Ad+ ++gpGs+ytS++P+Llvpg+a+a+ +s a++++ +n+   + et g+s++dh++++ +++++      vd vl+++++v
  KIR62101.1 196 ADWLIFGPGSWYTSVLPHLLVPGLAAAIVASPARRLVTLNLAA-EKETLGLSLADHLATLRHYLPEL----AVDLVLADSKAV 273
                 ******************************************7.899******************66....899999998855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2556.79
//
Query:       KIR62102.1  [L=547]
Description: glucose-6-phosphate isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-07   30.9   0.0    9.2e-07   27.8   0.0    1.9  2  PGI       Phosphoglucose isomerase


Domain annotation for each model (and alignments):
>> PGI  Phosphoglucose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   5.2e-11   9.2e-07      95     308 ..      89     293 ..      83     305 .. 0.79
   2 !    0.7   0.0    0.0087   1.6e+02     427     452 ..     345     370 ..     341     388 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 5.2e-11
                 B--EEEEE--GGGTHHHHHHHHHTGGG-TT-EEEEE--SSHHHHHHHHTT--GGGEEEEEE-SSS--HHHHHHHHHHHHHHHHHH--GGGGGGTEEEES CS
         PGI  95 aitdvvniGiGGsdlGPvlvtealkkeserlkvafvsnvdgthiaevlkkldpettlfivasktfttaetllnaesakewllkalkedsavakhfvals 193
                 ++ +vv  G+GGs l   +vt al +      ++++   d+ ++ ++l +   ++t++++a k   t et    +  ++++l++     +  +hfv ++
  KIR62102.1  89 DLDHVVVAGMGGSSLAAEVVTRALGRP-----LTVLDTTDAGQVRRALTD-RLDRTVVVLAGKSGRTVETDSHWRVYRQAFLDSGLTAAEAGRHFVVVT 181
                 689*********************764.....6788999*********98.5789*******************************99999*******9 PP

                 S-HHHHHHHT--GGGEEE--T.TS-GGG-TTSGGGHHHHHHH-HHHHHHHHHHHHHHHHHHHHS-GGG-HHHHHHHHHHHHHHTS---EEEEEES-GGG CS
         PGI 194 tnaekveefGideknmfefwd.wvGGryslwsaiGlsvalsiGfenfeelleGaaaidkhfleaplekniPvllalvgvwyvnflgaeteailpydqyl 291
                    +  e +  +   +   +d  vGGry+  +a Gl  a   G   ++elle a a+   +   + +  + + +a   +   +  g +  a++p    l
  KIR62102.1 182 DPGSPLEAVAAELGAVTVPADpRVGGRYAALTAFGLVPAALAGV-AVDELLEQAGALAGALGRDADNPGLALGAA---LGAAATAGRDKVALVPDGTGL 276
                 99999998888887776655538************765555565.688899888887766655444333333333...234556666666777777777 PP

                 TTHHHHHHHHHHHHH-- CS
         PGI 292 erlaaylqqldmesnGk 308
                   l  ++ ql  es Gk
  KIR62102.1 277 DGLGDWIEQLLAESTGK 293
                 77777777777777776 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.0087
                 HHHHHHHHHHHHHHHHHHHTB-TT-- CS
         PGI 427 lGalialyehkilvqGviwginsfdq 452
                 lGa    +e+ +++ Gv +g+n fdq
  KIR62102.1 345 LGAQFLTWEYATAIAGVTLGVNPFDQ 370
                 78888899*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3945.00
//
Query:       KIR62103.1  [L=309]
Description: hypothetical protein TK50_24680 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2356.97
//
Query:       KIR62104.1  [L=137]
Description: metal-sulfur cluster biosynthesis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-21   76.2   1.0    2.7e-21   75.5   1.0    1.3  1  FeS_assembly_P  Iron-sulfur cluster assembly protein


Domain annotation for each model (and alignments):
>> FeS_assembly_P  Iron-sulfur cluster assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   1.0   1.5e-25   2.7e-21       2      66 ..      35     100 ..      34     105 .. 0.95

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 1.5e-25
                     HHHHHHHTT-B-TTTSSBCCCCT---EEEE-T.-EEEEEE--SSTT-TTHHHHHHHHHHHHC.STT CS
  FeS_assembly_P   2 eavlaaLrtVtDPelgvdlvslglvreidieg.gkVsvditltypacslaeairadaeaalralpg 66 
                     ++v++a+++V+DPelg+++v+lglv+++++++ +++++d+tlt++ac+l + i+++a++al + pg
      KIR62104.1  35 ADVEEAMKDVVDPELGINVVDLGLVYGVHVDDdNVATLDMTLTSAACPLTDVIEDQARQALTTGPG 100
                     69******************************88899***************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1042.48
//
Query:       KIR62105.1  [L=351]
Description: polysaccharide deacetylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-34  116.0   0.0    2.5e-33  114.6   0.0    1.7  2  Polysacc_deac_1  Polysaccharide deacetylase
  ------ inclusion threshold ------
       0.17   12.1   4.2       0.17   12.1   1.4    2.3  2  SepZ             SepZ


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.0   2.8e-37   2.5e-33       8     123 ..      53     168 ..      48     169 .. 0.98
   2 ?   -3.2   0.0      0.85   7.6e+03      81     103 ..     203     226 ..     199     232 .. 0.77

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 2.8e-37
                      EEEEEEEESSCSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHHHHHHHHHHHS----EE CS
  Polysacc_deac_1   8 svalTfDdgprdntteilpvLkkykvkatffvigglvedypdevremaasGveignHtinhsnlkrlseeevrreierakdalrkalgreprlf 101
                       v lTfDdgp+  t+++l+vL++++v+at+f +g++v+ +p+ +r+ +++G+ ++nH++nh +++++s+++++ ++ +++ a+++a+g +p+lf
       KIR62105.1  53 YVGLTFDDGPTGSTNALLSVLRANNVRATMFNVGQNVQGNPSAARAQVDAGMWVANHSWNHAHMTSMSQSQMQSDLSQTNSAIQSATGVRPQLF 146
                      689******************************************************************************************* PP

                      E-GGGEE-HHHHHHHHHTT.EE CS
  Polysacc_deac_1 102 ryPygsasatvlevarelgfay 123
                      r+Pyg+ + t   va +lg+++
       KIR62105.1 147 RPPYGETNSTLQSVATSLGLRQ 168
                      *******************986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.85
                      HHHHHHHHHHHHHHS-.---EEE- CS
  Polysacc_deac_1  81 reierakdalrkalgr.eprlfry 103
                      + i++++da+ +++ + ++r +++
       KIR62105.1 203 DGIQNTRDAIPQIMANlNSRGLCP 226
                      568899999999888877777776 PP

>> SepZ  SepZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.4   1.9e-05      0.17      38      92 ..      16      71 ..      12      77 .. 0.87
   2 ?   -1.9   0.0      0.44   3.9e+03       8      24 ..     324     340 ..     319     344 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.9e-05
        SepZ 38 tsrtvrvlaGvalattalaalGaGiaalcvenssqk.klglGiaaGvlGgltalGg 92
                ++r  r la +a a+ alaa+G  +aa  +  ++ + ++gl    G  G+  al +
  KIR62105.1 16 AARHARRLAVLATAAVALAATGLAVAATPSSAAACNgYVGLTFDDGPTGSTNALLS 71
                57889999*******************9999988888*****99999998888765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.44
        SepZ   8 psGavlplaatinGnns 24 
                  sG+ + +++ +nGn+s
  KIR62105.1 324 GSGNTFGFTTMMNGNSS 340
                 58899999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2408.91
//
Query:       KIR62106.1  [L=305]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-87  291.8   1.8    7.2e-87  291.5   1.8    1.0  1  Zn_peptidase  Putative neutral zinc metallopeptidase
  ------ inclusion threshold ------
      0.083   13.4   0.0        4.1    8.0   0.0    2.5  2  PSD3          Protein of unknown function (DUF1587)
        0.1   12.6   0.0       0.25   11.4   0.0    1.6  1  GlgS          Glycogen synthesis protein


Domain annotation for each model (and alignments):
>> Zn_peptidase  Putative neutral zinc metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.5   1.8   1.2e-90   7.2e-87       6     290 .]       8     301 ..       3     301 .. 0.82

  Alignments for each domain:
  == domain 1  score: 291.5 bits;  conditional E-value: 1.2e-90
  Zn_peptidase   6 rresdnvedrrassggegaGGggkgrslggktgllvlilvlvgllfG..vdlsallglgqesstaeaaaqssegtaeeaedeqkefvsvvladtedt 100
                   r ++ +v+drr+s gg+g GG      +gg++g++ +i++++ +l+G  ++l a    g+ s + ++++ +++ +a +a ++     +  + + + +
    KIR62106.1   8 RIDTSQVDDRRGSGGGGGLGGIP-IPIGGGRGGIVGIIVAVLVALVGggFGLNAAFD-GDGSGQGDNTSLEQKCSADDALKQLDCRNTLYVNSIQAY 102
                   567889*****999999999855.666677777777777666666651156666666.55555555565555555555444444445566788999* PP

  Zn_peptidase 101 Wtqifk.ekgktyqkpklvlfsrvvrsaCGtassatGPfyCPadrkvyldlsffdelkqklgaaGdfaaayviahevGhhvqnllGilekveqarqg 196
                   W   +  + g++yq +k v+fs+ v++aCG+a+s +GPfyCPad  vy+dl+f++ l ++lga+G+fa+ yv+ahe Ghhvq+llG ++++++ +q+
    KIR62106.1 103 WRTALPeTFGEQYQPSKTVFFSQGVNTACGQADSGVGPFYCPADDLVYIDLTFYNLLADQLGAKGEFAQPYVLAHEYGHHVQDLLGTEAQMRR-QQQ 198
                   *988763789******************************************************************************99986.567 PP

  Zn_peptidase 197 aseaeanqlsvrleLqadcfaGvWansv......qqkgl...lekgdieealnaakaiGddtLqkqsqgrvvPdsfthGtsqqrqrWfkrGfesGdl 284
                   ++ a+an+lsv+leLqadc+aG+Wa ++      q++++   + + d+++a+++a++iGdd +q++s + v Pd fthGts+qr +Wf++G+++Gd+
    KIR62106.1 199 RDPANANALSVKLELQADCYAGAWARNAtgtadeQGQKIfksISEQDVRQAIDTAEKIGDDAIQQRSGRPVNPDEFTHGTSEQRRQWFTKGYDTGDP 295
                   89***********************98623222223333234789**************************************************** PP

  Zn_peptidase 285 aqcdtf 290
                   +qcdtf
    KIR62106.1 296 KQCDTF 301
                   *****8 PP

>> PSD3  Protein of unknown function (DUF1587)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00068       4.1       6      32 ..     177     203 ..     176     227 .. 0.85
   2 ?    2.7   0.0      0.03   1.8e+02      43      64 ..     240     261 ..     234     262 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00068
        PSD3   6 aEYenTvrDLlgvdldlaaslpaDpas 32 
                 +EY + v+DLlg++ +  ++   Dpa+
  KIR62106.1 177 HEYGHHVQDLLGTEAQMRRQQQRDPAN 203
                 69*************999998888873 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.03
        PSD3  43 svspllleqYldaAeeiadeav 64 
                 s+s+  + q  d+Ae+i d+a+
  KIR62106.1 240 SISEQDVRQAIDTAEKIGDDAI 261
                 789999**************98 PP

>> GlgS  Glycogen synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.2e-05      0.25      23      51 ..     263     291 ..     260     298 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.2e-05
                 HHHT----HHHHHHH--TTHHHHHHHHHH CS
        GlgS  23 haeGrrvDidavtGnmdeahraWFckRYa 51 
                 +  Gr+v+ d  t   +e++r+WF k Y 
  KIR62106.1 263 QRSGRPVNPDEFTHGTSEQRRQWFTKGYD 291
                 568***********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2210.75
//
Query:       KIR62107.1  [L=197]
Description: cadmium transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-30  105.0   0.3    1.7e-29  103.1   0.3    1.7  1  Cad       Cadmium resistance transporter


Domain annotation for each model (and alignments):
>> Cad  Cadmium resistance transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.3   9.5e-34   1.7e-29       2     187 ..      13     190 ..      12     195 .. 0.88

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 9.5e-34
         Cad   2 iataldlliillllfarlks..kkekldiylGqylGsvalvlvsllfafvlnyvpeewilGllGlipiylGikvlllGdedeee.elkeelekkkakkl 97 
                  at +d +++l +lf+ ++s  +    +i +GqylG  alv ++ ++a  l  vp+ w  GllGl+pi lG++ ll   +d+    +            
  KIR62107.1  13 AATNIDDVVVLTVLFVAARStgRPRPGHIVAGQYLGIGALVAAAAVAAAGLLVVPDPW-TGLLGLLPIALGVRALLARSDDDGPpAVVGG--------- 101
                 689*********999765541266778*******************************.5*************99987655544033333......... PP

         Cad  98 lftvalitiascGadniglfvpyfvtlslanllvallvflililllvllakklakipsvgevlekysrwivalvyivlGlyillendtie 187
                 l  va +tia  Gadni+++vp f +l  a+ lv l+vf+ l+ l + +a  l   p v   + + + w+v++v++++G +il+ ++ + 
  KIR62107.1 102 LLGVAGVTIAN-GADNIAVYVPVFRSLAPADALVWLVVFAALVGLWCAVAAGLGGHPAVVRWVGRVGHWLVPVVFVAIGGLILVTSGLLT 190
                 346899****9.***********************************************************************9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1492.05
//
Query:       KIR62108.1  [L=189]
Description: DNA glycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-24   86.9   0.1    2.4e-24   86.1   0.0    1.4  2  UDG       Uracil DNA glycosylase superfamily


Domain annotation for each model (and alignments):
>> UDG  Uracil DNA glycosylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1      0.32   5.7e+03      68      82 ..       7      20 ..       5      23 .. 0.71
   2 !   86.1   0.0   1.3e-28   2.4e-24       3     145 ..      26     172 ..      24     183 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.32
                ECGCTTCCCCTCCHH CS
         UDG 68 nrdtptsaeikacap 82
                +r  pt++e++a a+
  KIR62108.1  7 RR-RPTREELAAAAE 20
                34.799999988776 PP

  == domain 2  score: 86.1 bits;  conditional E-value: 1.3e-28
                 C-CTT-SEEEEESSTCHHHHHHSSSS.-STT--HHHHHHHCCCCCCCHHG........CTEEEEESSS....SEC.GCTTCCCCTCCHHHHHHHHHHHH CS
         UDG   3 egppdakvvivGeaPgaeedatglpFsgragnllrkllneaglkrdlese........qgvyitnvvkcrppgnr.dtptsaeikacaplleeeiellk 92 
                    p + v++vG +Pg +++atg +F +r+gn+++++l++ g+++++  +         g++itn+v  r+ + r d++t++e+ ++a++l +++++ +
  KIR62108.1  26 VIGPGLTVLFVGINPGLWSAATGWHF-ARPGNRFWPALHRGGFTPHQLHPseqdalpgYGLGITNMVA-RA-SARaDELTADELVEGARILTAKVRRHR 121
                 5678999*******************.******************99999******************.43.44579********************** PP

                 SSEEEEESHHHHHH....HHHHSCESCCCSCT.SEEEEES-SSTTTTTTTTSHHH CS
         UDG  93 prlivllGktaakall..geklgklrgklleakirvlplphPsplnrnffksnpe 145
                 p  + ++G ta++  +  ++   +++ +ll++  r+++lp+Ps+ln++f   + e
  KIR62108.1 122 PAWVAVVGVTAYRIGFgrPKAAFGPQPELLDD-ARLWVLPNPSGLNAHF---TAE 172
                 **************655655666899999999.9**************4...333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1445.22
//
Query:       KIR62109.1  [L=154]
Description: hypothetical protein TK50_24785 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      153  (0.00853366); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.49
# Mc/sec: 945.65
//
Query:       KIR62110.1  [L=274]
Description: endonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-82  277.3   0.0    1.3e-82  277.0   0.0    1.0  1  DUF692    Protein of unknown function (DUF692)


Domain annotation for each model (and alignments):
>> DUF692  Protein of unknown function (DUF692)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.0   0.0   7.1e-87   1.3e-82       1     261 [.       8     267 ..       8     268 .. 0.97

  Alignments for each domain:
  == domain 1  score: 277.0 bits;  conditional E-value: 7.1e-87
      DUF692   1 gvGlglrrelleelleekpevdflEvaaenylkaggkarkelealreryplvlHGvslslGsaepldeehlkrlkallerlepalvSeHlsfssaggve 99 
                 gvG+g+r+e++  ++ e p ++f+Ev+ae +  +g ++    + +++ + +v+HGv+lslG+aep+d +++++l++++e ++++lvSeH++f++agg+e
  KIR62110.1   8 GVGIGWRPEIAGFVA-ELPGLRFVEVVAEAVAPHGPPPPGLAALVERGVTVVPHGVKLSLGGAEPVDPARVAHLARVAELVDAPLVSEHIAFVRAGGLE 105
                 69********99998.*************999766666666666699**************************************************** PP

      DUF692 100 lndllPlpyteealavvaerikqvqdiLerplllEnvssylafpeselsEaeFlaelvertgcglllDvnNvyvnavNhgfdpeayldalplervaeiH 198
                 +++llPlp+++ea+a+v+++++++q+ L +pl+lE +++++++p++el+Ea+Fl+e+++ tg+ lllDv+Nv++na+N+g+dp a ld+lpl+rva++H
  KIR62110.1 106 AGHLLPLPRSREAVAAVVANVRRAQADLPVPLALEPIAALFDWPDDELDEADFLTEILDATGATLLLDVANVHANARNRGADPLALLDRLPLDRVAYVH 204
                 *************************************************************************************************** PP

      DUF692 199 lAGheekeelliDtHgapvadevwalleealarlgpvptllErDnnipplaellaelakarai 261
                 +AG++e++++++DtH++pv+ +v++l+ e++ar++p ++llErD + pp++ l ael++++a+
  KIR62110.1 205 VAGGAEQGGFYHDTHTDPVPPAVLDLIGELCARHRPPALLLERDGRWPPASALRAELDAIAAA 267
                 ****999***************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       189  (0.0105416); expected 358.6 (0.02)
Passed bias filter:                      153  (0.00853366); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1979.75
//
Query:       KIR62111.1  [L=441]
Description: cytochrome P450 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-64  217.5   0.0    3.8e-64  217.1   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.1   0.0   2.1e-68   3.8e-64      34     438 ..      25     409 ..      15     429 .. 0.90

  Alignments for each domain:
  == domain 1  score: 217.1 bits;  conditional E-value: 2.1e-68
                 -SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCC CS
        p450  34 gpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleelveeeaedlveklrkk 132
                 g+++rl +g  +  ++++p++v++vl++++++f + +d a+   +r   +  + ++ +g+ w   Rr+l p +t    +s+  ++   ++d v++l+  
  KIR62111.1  25 GEVVRLNVGAFRPYLVTDPDHVQQVLGDRADNFGRSGDGAFWGPLR--RLFGDGILGDGPVWSDSRRILQPLFTARRVESVLHRMAATIADAVAELDAP 121
                 8999999**99999**********************9999888855..4444556799******************5559999**************** PP

                 CCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH.HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        p450 133 agesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp.llkylptkllrklkeavkklkdlldklieerret 230
                 a +   +di    +++++ +i++++Fg r+++ +     +l++a +++ + +    +++l +f  l+  lp +  r +++a ++++d+l ++++  r +
  KIR62111.1 122 AHAGRPVDIGAEQTRIVCRAIMETFFGDRISVADAL---RLIRAQDAIATSV---IPRVLAPFVpLA--LPMPGDRAFRDAARRIDDVLVPIVRSARGS 212
                 *9999************************9954444...5666666664445...455666666244..6778899*****************988876 PP

                 HCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHH CS
        p450 231 ldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavik 329
                   +      d ++ l   + + +g+  l+++++++ +  + +  ++Tt ++l+w   +La+ Pev ++l+eEid+v g++ ++  ++l +l y+++v+ 
  KIR62111.1 213 DGD------DVIATLWRGS-TADGR-PLDERQVRNDTVAMVAVTTETTVNVLTWLWPHLARSPEVAARLQEEIDSVAGGH-PVGPEHLPRLRYTRMVLD 302
                 444......69*******6.99998.***************************************************996.8***************** PP

                 HHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHH CS
        p450 330 EtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflat 428
                 E  Rl+pv+  l pR+v+++++++g+ +p+G +v+v++  +hr   ++++P +FdpeRF ++++   r+ +af+PFG Gp++C+G++l ++e +l++a+
  KIR62111.1 303 ELIRLYPVAW-LAPRQVLRPTTLGGVRLPAGATVLVSPLVTHRLARYWDDPGTFDPERFTPDRV-RARHRYAFFPFGGGPHQCLGMHLFYLEAQLIVAN 399
                 **********.*****************************************************.66******************************** PP

                 HHHHEEEEES CS
        p450 429 lLqnFevelq 438
                 lL ++++ + 
  KIR62111.1 400 LLARYRLRVR 409
                 ******9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2953.02
//
Query:       KIR62112.1  [L=295]
Description: terpene synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00017   21.0   0.0    0.00024   20.6   0.0    1.1  1  Terpene_synth_C  Terpene synthase family, metal binding domai
  ------ inclusion threshold ------
       0.26   11.3   2.3          1    9.4   0.3    2.7  2  HisKA            His Kinase A (phospho-acceptor) domain


Domain annotation for each model (and alignments):
>> Terpene_synth_C  Terpene synthase family, metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.7e-08   0.00024     140     234 ..     138     233 ..     117     247 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.7e-08
  Terpene_synth_C 140 ylkeawkelvkaylkeakWreek.....yvPsfeEylenslvssglpllllaalvgmgdevtkeafewvasypklvkalstilRLlnDiasyer 228
                        + a+ ++v a+ +e  W+ ++      +P f Eyl n+   +++ + +++  +  gd  t+     + +   +   ++++lRL+nD+a+yer
       KIR62112.1 138 AWRAAVRRTVTAMAREWDWKTARerdgaPLPGFTEYLANADNLACTVVNVAHW-IWTGDAETHR---RLDRLVTVSDEVQRVLRLVNDLATYER 227
                      567788999999999999985543344579*********77666555555555.5888844444...455566666777899***********9 PP

  Terpene_synth_C 229 eqkrgd 234
                      + + gd
       KIR62112.1 228 DLEWGD 233
                      987765 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00011         1      32      63 ..     196     227 ..     115     233 .. 0.76
   2 ?   -2.3   0.1      0.52   4.6e+03      34      49 ..     244     259 ..     234     262 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00011
                 T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       HisKA  32 klteelkeyletiesearrldhlvedlLdlsr 63 
                 + t +  + l t+ +e++r+++lv+dl +++r
  KIR62112.1 196 AETHRRLDRLVTVSDEVQRVLRLVNDLATYER 227
                 44555566889999*************66665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.52
                 HSSCHHHHHHHHHHHH CS
       HisKA  34 teelkeyletiesear 49 
                  e  ++ +e +e++++
  KIR62112.1 244 AEVDQRIVELVERCTE 259
                 4555666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2022.35
//
Query:       KIR62113.1  [L=316]
Description: glycerophosphodiester phosphodiesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-23   82.1   0.0    6.8e-23   81.7   0.0    1.1  1  GDPD      Glycerophosphoryl diester phosphodiesterase family


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.0   3.8e-27   6.8e-23       1     117 [.      34     172 ..      34     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 3.8e-27
                 TTTTTTTSS......................TTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH.BGGGS-HHHHHTST...... CS
        GDPD   1 HRGasgnlp......................EnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagrldvkdltleelkrld...... 71 
                 HRG+ +++                       EnTl+s+++A+++ ad++EfDvq+T+Dg + v+HD +l+  td+ g   v d tl+el+ ld      
  KIR62113.1  34 HRGLAQTYDlagvtndtctaerihppqhpylENTLASMRAAFAADADLVEFDVQVTRDGRLAVFHDATLQCRTDGTG--TVGDHTLAELRGLDlgygyt 130
                 7777777777777777777777777888899**********************************************..**************999995 PP

                 .ECCTTCCCCSCCCSSGCCB...BHHHHHHHHHHCCSEEEEEEECCC CS
        GDPD  72 .kiakenkaqlsenrvrlefpfptleevlkkpqnvglnieikipmls 117
                  +   +++ ++++  v     +pt+eevl++ ++ +l i  k++   
  KIR62113.1 131 sD--GGKTFPFRGRGV---GLLPTVEEVLAEFPGRELLIHLKVEGAA 172
                 54..555569999999...57********987777777777776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2345.06
//
Query:       KIR62114.1  [L=463]
Description: hypothetical protein TK50_24925 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 2972.73
//
Query:       KIR62115.1  [L=653]
Description: asparagine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-98  328.4   0.0      1e-97  328.0   0.0    1.1  1  Asn_synthase  Asparagine synthase
    4.1e-40  136.5   0.0    8.2e-40  135.5   0.0    1.5  1  GATase_7      Glutamine amidotransferase domain
    2.5e-35  121.6   0.0    6.1e-35  120.3   0.0    1.7  1  GATase_6      Glutamine amidotransferase domain
    2.5e-06   27.1   0.0    1.8e-05   24.3   0.0    2.0  2  DUF3700       Aluminium induced protein
     0.0078   15.7   0.0      0.024   14.1   0.0    1.7  2  QueC          Queuosine biosynthesis protein QueC


Domain annotation for each model (and alignments):
>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.0   0.0  2.9e-101     1e-97       1     354 [.     252     623 ..     252     624 .. 0.88

  Alignments for each domain:
  == domain 1  score: 328.0 bits;  conditional E-value: 2.9e-101
  Asn_synthase   1 elrelLedaVkrrlradvpvGalLSGGlDSSliaalaarqsksplktFsigfeekgsdeakyakevaehlgtehtelvlteeelldalpdviyhlee 97 
                   ++re+L+++V++++r+dvpvG++LS G+DS++++ala+++++ ++ tF++g++ +g++e+++a+  a+hl +  +   + +++++dalp++++hl++
    KIR62115.1 252 QIRETLRESVRMHMRSDVPVGSFLSSGIDSTAVVALAREFNP-HILTFTVGYDVPGYSEIDVAQDSARHLDVTTIPTKIGPQDMIDALPKIVWHLDD 347
                   58***************************************8.9********88******************************************* PP

  Asn_synthase  98 pfadrsaiplyllsrlakrkgvkvvLsGeGaDElfgGYpyfykaalsrsrefeklp.........larslrasllarklrklaellelaeardleel 185
                   p+ad++ +ply+++++a +++v+vvLsGeGaDE+fgGY+ +y+++ls    +  lp         +         ++ + + ++  ++ e+ ++  +
    KIR62115.1 348 PVADPALVPLYFVAKKA-AEHVTVVLSGEGADEFFGGYT-IYREPLSLGAVN-GLPggvqkglraV---------SKAIPQGVKGKSFLERGTT-PI 431
                   *****************.888*****************9.*****8886665.4554655555551.........3333333333333333333.23 PP

  Asn_synthase 186 aelyrlkasdsae........................aelegedelhrelyldlktllpgdllrk.DrasmahglEaRvPflDhrlvevalrlppel 257
                   +++y+++a+ + e                        ae  + d++ +++y+dl t+l+gd+l+k Dr+smah+lE+RvPflD+++++va+++p++l
    KIR62115.1 432 EQRYYGNARMFTEeekqhllrrydpsvrytdvtapiyAECTELDDVTKMQYVDLYTWLRGDILVKaDRISMAHSLEVRVPFLDKEVFDVAATIPVDL 528
                   4455555555544555555667777777777888999************************************************************ PP

  Asn_synthase 258 klrg..gieKyiLRealegylPeeileRpKegfsapvgewklkgelrelaeellsdsrlakeglldreaveelleeheagkrnesrqlwslllslea 352
                   kl +  + +Ky +R+al+g++P++i++R+K gf+ p++ w l+ge+ e+a+  ls+s   + +l+d ++  +lleeh+++++++sr+ w++l  +  
    KIR62115.1 529 KLPPrsDATKYAMRQALQGVVPPAIVNRRKLGFPTPTRVW-LRGEMYEWARWVLSNS--GAGELIDLSYAMRLLEEHKREEADHSRKVWTVL-IFCI 621
                   **99889*********************************.***************9..5556*****************************.9999 PP

  Asn_synthase 353 wl 354
                   w+
    KIR62115.1 622 WH 623
                   98 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.5   0.0   2.3e-43   8.2e-40       1     122 [.      55     174 ..      55     175 .. 0.97

  Alignments for each domain:
  == domain 1  score: 135.5 bits;  conditional E-value: 2.3e-43
    GATase_7   1 hrrlsiidseagaQPmvssedgrlvivfnGeiyNykelreeLeak.ghrfrtksDtevllalleaewgeealerlnGmfAfaiwdeeekrlllaRDrlG 98 
                 h+rl+iid+++++ P+   ++gr+ ++fnGeiyNy elr+eL ++ g +f+t +D ev++a +++ wge++l rl+GmfAf+iwd++e+r + aRD++G
  KIR62115.1  55 HKRLAIIDVASSHEPLP-YAGGRYLLTFNGEIYNYIELRDELVRNfGAQFATAGDGEVIVAGYHY-WGEQVLTRLRGMFAFVIWDRQERRAFGARDNFG 151
                 89***************.69**********************99879****************98.********************************* PP

    GATase_7  99 ikPLyygedkgdallfaSelkall 122
                 ikPL+y+e++ d+l++aSe kall
  KIR62115.1 152 IKPLHYLETA-DGLYLASEKKALL 174
                 *********7.7**********97 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.0   1.7e-38   6.1e-35      13     134 .]      45     169 ..      33     169 .. 0.91

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 1.7e-38
    GATase_6  13 e.....valaHvRlaivglaeeegaqPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevllalleelGeevlerlrGmfafaiwdkren 106
                 +      ++aH Rlai++ a  +++ P+p + gr+ll++NGeiyny elr+el ++ g++f++  D ev++a ++++Ge+vl+rlrGmfaf+iwd++e+
  KIR62115.1  45 SgqyadGVFAHKRLAIIDVA--SSHEPLPYAGGRYLLTFNGEIYNYIELRDELVRNFGAQFATAGDGEVIVAGYHYWGEQVLTRLRGMFAFVIWDRQER 141
                 13444499***********9..77789999********************************************************************* PP

    GATase_6 107 tlilardrlgvkplyyavdesglafase 134
                 + + ard +g+kpl y ++ +gl+ ase
  KIR62115.1 142 RAFGARDNFGIKPLHYLETADGLYLASE 169
                 ***************************8 PP

>> DUF3700  Aluminium induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.14   4.9e+02     109     151 ..      23      66 ..      13      75 .. 0.78
   2 !   24.3   0.0   5.1e-09   1.8e-05     120     175 ..     118     173 ..     110     180 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.14
     DUF3700 109 eayrtLrdrgPypa.dqvvkdleGkfafvlydskaktvfvalda 151
                  a   L  rgP  +  +vv d +G++a  ++ +k  +++  +++
  KIR62115.1  23 GALECLHHRGPDETgVEVVGDASGQYADGVFAHKRLAIIDVASS 66 
                 57788999***876268**********99999988777655544 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 5.1e-09
     DUF3700 120 ypadqvvkdleGkfafvlydskaktvfvaldadgsvplyWGiaadgsvvisddlel 175
                 y  +qv+  l+G fafv++d +++ +f a+d+ g  pl++  +adg  + s+++ l
  KIR62115.1 118 YWGEQVLTRLRGMFAFVIWDRQERRAFGARDNFGIKPLHYLETADGLYLASEKKAL 173
                 6679******************************************9999987765 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.2   4.4e+03      93     122 ..      88     117 ..      85     120 .. 0.89
   2 !   14.1   0.0   6.7e-06     0.024       6      54 ..     275     323 ..     272     338 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.2
                 --TTHHHHHHHHHHHHHHHHT-SEEEE--- CS
        QueC  93 fVpaRNliflslaasyaealgaeaiiiGvn 122
                 ++  R  ++  + a +a a + e i+ G +
  KIR62115.1  88 YIELRDELVRNFGAQFATAGDGEVIVAGYH 117
                 889999999999********9999999976 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 6.7e-06
                 --SSHHHHHHHHHHHHH-SEEEEEEEESS-TTSHHHHHHHHHHHHT--. CS
        QueC   6 lSGGlDSttvlalakkegkevealtfdYgqrhkkeleaakkiakelgve 54 
                 lS G+DSt+v+ala++   ++ + t+ Y+    +e+++a++ a++l+v+
  KIR62115.1 275 LSSGIDSTAVVALAREFNPHILTFTVGYDVPGYSEIDVAQDSARHLDVT 323
                 89********************************************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4585.06
//
Query:       KIR62116.1  [L=477]
Description: hypothetical protein TK50_24970 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-44  150.0   0.7    1.1e-16   60.8   0.0    3.2  3  bPH_2     Bacterial PH domain


Domain annotation for each model (and alignments):
>> bPH_2  Bacterial PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0     6e-21   1.1e-16       1      79 [.      99     177 ..      99     178 .. 0.98
   2 !   31.8   0.0   6.8e-12   1.2e-07       3      72 ..     278     345 ..     277     347 .. 0.93
   3 !   54.5   0.0   5.7e-19     1e-14       1      65 [.     389     451 ..     389     470 .. 0.88

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 6e-21
       bPH_2   1 yrattytitdrrvvvrsGillrktldiplerIqavsleqsllqrrlglgtivietaggsraevelplrsvpdaeelael 79 
                 +++t+y + +r+++v +G+l+r+t+ ipler qav+++++ll ++ gl+++++e+ gg++ e+ l+++ v++a++l+++
  KIR62116.1  99 WYNTGYHVVGRELRVYEGLLWRRTRAIPLERLQAVEVVRPLLAQLTGLAELRLEVVGGGKTEAPLAYLGVAEAAALRQR 177
                 99**************************************************************************987 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 6.8e-12
       bPH_2   3 attytitdrrvvvrsGillrktldiplerIqavsleqsllqrrlglgtivietaggsraevelplrsvpd 72 
                 +++ + ++ +++vr G+l+++  ++pl+r+q+v ++ +ll r  g   +++e+ag s+   e  +r++pd
  KIR62116.1 278 NFRLARDEGTLRVRNGLLETRAQTVPLNRVQTVGVTWPLLWRAKGWLRLRLEVAGYSG--GEADDRNRPD 345
                 688889999************************************************9..7888888876 PP

  == domain 3  score: 54.5 bits;  conditional E-value: 5.7e-19
       bPH_2   1 yrattytitdrrvvvrsGillrktldiplerIqavsleqsllqrrlglgtivietaggsraevel 65 
                 +ra +  +++r ++ rsG+l+r+ +++p++rIq+v+++q++ qrrl+l+t++ +tagg++a+   
  KIR62116.1 389 WRAVGAGLDERVFAARSGLLTRQLTVVPYARIQSVRVTQGPAQRRLRLATVHADTAGGAGAA--A 451
                 88889999***************************************************844..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3438.06
//
Query:       KIR62117.1  [L=274]
Description: hypothetical protein TK50_25045 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2080.35
//
Query:       KIR62118.1  [L=599]
Description: thiamine pyrophosphate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-41  141.1   1.3    6.7e-41  139.7   0.6    2.0  2  TPP_enzyme_N    Thiamine pyrophosphate enzyme, N-terminal TPP
    4.6e-26   91.4   0.0    1.3e-25   90.0   0.0    1.8  1  TPP_enzyme_C    Thiamine pyrophosphate enzyme, C-terminal TPP
    2.8e-24   85.4   0.0    9.7e-24   83.7   0.0    1.9  2  TPP_enzyme_M    Thiamine pyrophosphate enzyme, central domain
  ------ inclusion threshold ------
       0.04   13.7   0.1      0.088   12.5   0.1    1.5  1  POR_N           Pyruvate flavodoxin/ferredoxin oxidoreductase
       0.13   12.4   3.5       0.26   11.4   0.8    2.9  2  Acetyltransf_6  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   0.6   1.9e-44   6.7e-41       2     169 ..       6     174 ..       5     177 .. 0.96
   2 ?   -1.3   0.0      0.41   1.5e+03     130     146 ..     524     540 ..     517     554 .. 0.75

  Alignments for each domain:
  == domain 1  score: 139.7 bits;  conditional E-value: 1.9e-44
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT..TSEEEE-SSHHHHHHHHHHHHHHH.TS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeq.girvvlarhEqgaafaAdgyarat.gkpgvvlvtsgpGatnaltalaeAkvdriPllvl 96 
                   tva+ +v +L+++gv+++fg+pG++i+ ++ al+++  + ++v++rhE++a+faA+++ +   g +g++l+tsgpGa+++l++l++Ak+d+ P+++l
    KIR62118.1   6 TVADHIVARLAQWGVRRYFGYPGDGINGMTSALQRAGdRAEFVQVRHEETAGFAASAHVKYGgGPLGCALATSGPGAIHLLNGLYDAKLDHQPVVAL 102
                   89**********************************************************997889******************************* PP

                   EEE--CCCHHS..TC--T-CCHHHCCCS.SEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEE CS
  TPP_enzyme_N  97 sgdrptslrgqgvlqqeldqlalfrpvt.kyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevd 169
                   +g+++ + +g g+ q e+d lal+++v+  +  ++++p++++++++rA+rta  +r+++++l+lp dv++e++ 
    KIR62118.1 103 VGHTALTAEGGGYYQ-EVDLLALYKDVAsAFLAQLDDPSQVRHLVDRACRTA-LARRTVTALVLPSDVQDEAAV 174
                   **********99999.*********99967789*******************.99***************9875 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.41
                   -SSGGGHHHHHHHHHHH CS
  TPP_enzyme_N 130 vtspeelpealrrAirt 146
                   v+sp+++p a rrA+++
    KIR62118.1 524 VDSPDQVPDAWRRALAA 540
                   67788888888777754 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   3.5e-29   1.3e-25       1     152 [.     393     547 ..     393     548 .. 0.92

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 3.5e-29
                   ESSHHHHHHHHHHTTSSSSEEEC.ETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHT.GGGHHHHHHT.....T-SEEEEEEE-SBCCCHHH CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsylt.sgglgtmGyglpaAiGaklakpdrevvaivGDGgflmi.lqelatavrr.....nlpitvvvlnNegygmtgg 90 
                   d G++t w ar+l+++ p+ + + sg+l +mG ++p++i+akla+pdr+ va+ GDG+++m+ ++el+t++++     +  ++v+vlnN+ ++++ +
    KIR62118.1 393 DCGTCTAWYARHLRLR-PGMLASlSGTLLSMGGAMPYGIAAKLAHPDRPLVALLGDGAMQMNgVNELITVAKHwrswpDPRFVVLVLNNRDLAFVSW 488
                   78**********8765.55555569***********************************************998887889**************99 PP

                   HHHHHTCCTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEE CS
  TPP_enzyme_C  91 qqepfggkrksgpagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpalie 152
                   +q++ g+++ + pa +dl++v + + ae lG +g+ v+++  +++ +a ++al+ ++p++i+
    KIR62118.1 489 EQRS-GEGTPMFPASQDLPDVAYHRWAEVLGLHGILVDSP--DQVPDAWRRALAADRPTVIN 547
                   8876.567999999999******************99999..*******************8 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   2.7e-27   9.7e-24       1     137 []     202     332 ..     202     332 .. 0.92
   2 ?   -2.2   0.0      0.87   3.1e+03       6      38 ..     432     465 ..     430     467 .. 0.77

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 2.7e-27
                   HHHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   +++aae l+  +r+++lvG+g+   ga++e+r++a++lg+ v+t l g  ++++++p   g +gl+g+++  ++++++D +l++G+++         
    KIR62118.1 202 VRRAAEVLRGGERVAMLVGQGAL--GAEAEVRQVADRLGAGVATALLGFTAVDHREPWVTGAIGLLGTRPSWQLMRDCDRLLIVGSNMPY------- 289
                   689********************..************************************************************99855....... PP

                   TTTTTT...-EEEEEESSCCCCTTCC--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  98 pefape...akiihididpaeigknyqvdlaivgdvketleaL 137
                   +ef p    a+ ++id+d + +g +y++++ + gd++ tl+aL
    KIR62118.1 290 SEFYPPqgqARGVQIDVDGSRLGLRYPTEVNLTGDAGPTLRAL 332
                   322222121588*****************************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.87
                   HHHHH-SSE.EEEE-CHHCHTTGHHHHHHHHHHH CS
  TPP_enzyme_M   6 ellkaakrp.vilvGggvarsgaseelrelaekl 38 
                   + l+   rp v l+G g+ + +  +el  +a+++
    KIR62118.1 432 AKLAHPDRPlVALLGDGAMQMNGVNELITVAKHW 465
                   5666667775668999999999999999998875 PP

>> POR_N  Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.4e-05     0.088      32     123 ..      40     133 ..      28     167 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.4e-05
                 CCTTEE.EEEE-S.SHHHHHHHHHHHHCTT-..EEEEEEECCHHHHCCCCHHHHHHTT--EEEEEEEEE-STTBEEEEE--TTCHHHH.S---EEE CS
       POR_N  32 kgevgdvevvqme.sEigaisaviGAaaaGa..raaTaTSgqGllLmienlglaageelPvvivvvaRalpstglsirtdqsDlmaar.dtglivl 123
                 + + +++e+vq+  +E + ++a ++  ++G    +a aTSg+G +     l+ a  ++ Pvv  v   al ++g  ++++  Dl+a+  d+  + l
  KIR62118.1  40 RAG-DRAEFVQVRhEETAGFAASAHVKYGGGplGCALATSGPGAIHLLNGLYDAKLDHQPVVALVGHTALTAEGGGYYQE-VDLLALYkDVASAFL 133
                 333.468999996267899999999999995225899*****************************99999998777765.344444335555555 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.8   7.3e-05      0.26      36     134 ..      12     122 ..       2     128 .. 0.72
   2 ?   -1.0   0.1      0.49   1.7e+03      29      71 ..     348     388 ..     328     402 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.3e-05
  Acetyltransf_6  36 elfraqwarr.............pdvfadpltraflrdllaalaargalrlyvlrldgrpvAvalglrsgdrlyywlggydpelaklspgllllw 117
                      +  aqw+ r             ++  +++  ra + ++ ++   +g +    ++ +g p+++al+    + ++++ g yd+ l++ +p   l+ 
      KIR62118.1  12 VARLAQWGVRryfgypgdgingmTSALQRAGDRAEFVQVRHEE-TAGFAASAHVKYGGGPLGCALATSGPGAIHLLNGLYDAKLDH-QPVVALVG 104
                     4445666766566666666555544444555555555555554.456666777788999************************998.68899999 PP

  Acetyltransf_6 118 eliedaaeeG.lrrfdlg 134
                     +++  a   G ++++dl+
      KIR62118.1 105 HTALTAEGGGyYQEVDLL 122
                     999999999989999997 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.49
  Acetyltransf_6  29 edleallelfraqwarrpdvfadpltraflrdllaalaargal 71 
                       ++a   ++raq++     + + +++a++++l ++l  +g++
      KIR62118.1 348 RIADATAGWHRAQREIAGQSADPVNPQALFAALDDQL--PGDV 388
                     3344445555555444433344557777888877777..6655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3951.47
//
Query:       KIR62119.1  [L=340]
Description: hypothetical protein TK50_25115 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      150  (0.00836633); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2687.01
//
Query:       KIR62120.1  [L=112]
Description: hypothetical protein TK50_25150 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-10   39.8   7.6    5.5e-10   39.0   7.6    1.4  1  Inhibitor_I36  Peptidase inhibitor family I36


Domain annotation for each model (and alignments):
>> Inhibitor_I36  Peptidase inhibitor family I36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   7.6     3e-14   5.5e-10       3      66 ..      19      84 ..      17      87 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 3e-14
  Inhibitor_I36  3 aaasdCpagyfClysdangtGtraelsgssa.avganmndnarSvwNrtgs.rvtvYtdanytgel 66
                   a+a +Cp  + C ys +n +Gt+ +++++++ ++  ++  + +S++N+++s +vt+Y+++nytg++
     KIR62120.1 19 ASADACPYERTCSYSTTNWGGTPGAVKENNKdLTAYYTWTHSESIYNNGAScNVTIYSGTNYTGTA 84
                   67999**************************96566777788**********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 888.85
//
Query:       KIR62121.1  [L=364]
Description: hypothetical protein TK50_25315 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-63  215.5  19.7    1.6e-63  215.3  19.7    1.0  1  HTH_42    Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> HTH_42  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3  19.7   8.9e-68   1.6e-63       1     328 []      31     354 ..      31     354 .. 0.93

  Alignments for each domain:
  == domain 1  score: 215.3 bits;  conditional E-value: 8.9e-68
      HTH_42   1 verlgavQadparahylvLwsRlggydpedleraladrqlveywamratlhlvpaedlpllrpamapalaae.lara..kgldareaaalaaavlerla 96 
                 ve+ ga+Qa++a++  ++L  Rl+g + +d+++al++r+++++w mr+t+hlvp +d+++++  +  +  a+ + r+  +gl  +ea+++a+ + e+la
  KIR62121.1  31 VEWFGAMQAQDAASGLWSLGLRLPGWTQADVQEALERREALRTWPMRGTVHLVPSRDARWMLDVTGVRTLAAaGPRRafLGLSLAEADRAADVLGEALA 129
                 799*************************************************************98877777555557********************* PP

      HTH_42  97 aegpltarelgealarrgwwgwkkpgkaskralellrlegelvvarrergfekvydlaervlPrav.rseaealreLvrrylrayGpatvadlaawsgl 194
                 ++  +t+++ +  l+++   g+++ g++  ++l+++ + g  ++a++  g+e++++l++++ P+    +++eal  L+ ry+r++Gp t +d+a w+gl
  KIR62121.1 130 GGTRMTRSQCQGTLNAA---GIDTTGQRGYHLLWYAAQKGVTCIAPHV-GTEQTFALLDEWVPDPHrPDRDEALGILALRYFRSHGPTTRQDFAGWTGL 224
                 *****************...**************************77.************99988555****************************** PP

      HTH_42 195 tkarlraalaelvaegelvevrvergrerlfdlpedlaelpgadtpv...rlLppfDnlllgrarrerlfddfdyrkevytpaakrrvlpvLvdGrvvG 290
                 t++++++ +a+    ++l+ v+v+ g e + ++++    l++++tpv   + Lp+fD++llg ++r+  +++++ ++ ++  ++ +   +v+ +Grv+G
  KIR62121.1 225 TATDAKRGIAAA--GDALTSVTVD-GVE-AVADAA---LLDAPRTPVddvHALPGFDEFLLGFKDRSLMVAPEHKQAIIPGGNGVF-QSTVVRGGRVAG 315
                 *********966..568*******.888.666665...344555554445***********************9999999999999.************ PP

      HTH_42 291 rwdlkadretgvleveaf.llleaeraaleaelerlarf 328
                 +w+ ++ ++++ + v+++  l +a+r+ ++a+l+++a+f
  KIR62121.1 316 TWKRTLGKTKVKVAVRPLvDLDAATRERVDAALAAYAAF 354
                 *****************99999***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2711.56
//
Query:       KIR62122.1  [L=238]
Description: hypothetical protein TK50_25320 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-26   90.8  19.6    8.4e-26   90.4  19.6    1.2  1  DUF2382   Domain of unknown function (DUF2382)
    5.8e-05   23.1   0.0    0.00011   22.2   0.0    1.5  1  PRC       PRC-barrel domain


Domain annotation for each model (and alignments):
>> DUF2382  Domain of unknown function (DUF2382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4  19.6   9.4e-30   8.4e-26       1     110 [.     119     227 ..     119     228 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 9.4e-30
     DUF2382   1 lklseErlrvgkervetGeVrvrkevvteeetveVpverEevvverepvdrevaaaeaareeeetievplyeErvvvekeavvvEeVrvrketveetet 99 
                 l++seErl vg+e + +G++r+rk+vv e+++ +Vpve++ev+verep++  +++a  +  ++e+ e +l++E++vv+ke v+vE+Vr++k++v e++ 
  KIR62122.1 119 LTRSEERLLVGTESEPAGTARLRKHVVDEDVHTTVPVEHDEVRVEREPIAPGDRRARSE-IGDEQQELRLRAEHPVVSKEQVPVERVRLTKDEVVEDQP 216
                 789**************************************************999988.*************************************** PP

     DUF2382 100 veetvrreele 110
                 v+e +rre++e
  KIR62122.1 217 VDERLRREQVE 227
                 *********97 PP

>> PRC  PRC-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.2e-08   0.00011       7      73 ..       2      63 ..       1      69 [. 0.84

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.2e-08
                ---TT-EEEETTSSEEEEEEEEEEETTTTEEEEEEEEETTT.....-EEEEEGG.CEECCCTEEEET CS
         PRC  7 sdliGkeVytedGeklGkVkDvvidekegrvralvvsvggflgigekevliPfdlavkigkdriivd 73
                ++l G++V +++G k+G V  v+ d  +g+++++ v++g    +g+ e   P +   + ++d++ + 
  KIR62122.1  2 RSLYGQDVQDRSGAKIGSVGQVWADA-AGEPTWVSVATG---VMGHHESMAPLQ-SARMQQDKLSLP 63
                589**********************8.***********9...788888888888.777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1627.13
//
Query:       KIR62123.1  [L=252]
Description: aminotransferase class I and II [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.029   14.1   0.0      0.047   13.4   0.0    1.3  1  HipA_C    HipA-like C-terminal domain


Domain annotation for each model (and alignments):
>> HipA_C  HipA-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.6e-06     0.047      18      59 ..      27      70 ..       5      81 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.6e-06
                T---SEEEEE...ECETTCHHHHHHHHHHHHHTT--B--EEEEE CS
      HipA_C 18 eapsthIlKfs..ddlpdlvenEylcmrlakaaGldvaevelve 59
                ++ +t+++Kfs   + p+    E +c +la+++Gl v++  +++
  KIR62123.1 27 DDLGTYVAKFSgaGQGPKALVAEVICGELARRLGLAVPRLVVLD 70
                67789*****657667777899****************987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1862.04
//
Query:       KIR62124.1  [L=130]
Description: hypothetical protein TK50_25330 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-41  140.8   0.0    2.9e-41  140.6   0.0    1.0  1  DUF3037   Protein of unknown function (DUF3037)


Domain annotation for each model (and alignments):
>> DUF3037  Protein of unknown function (DUF3037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   0.0   1.6e-45   2.9e-41       1     118 []      15     129 ..      15     129 .. 0.98

  Alignments for each domain:
  == domain 1  score: 140.6 bits;  conditional E-value: 1.6e-45
     DUF3037   1 YavirvvPrvereEfvNvGVvlfskkegflkvrleldeaRlralfpeldlealeeelkaleeicegekaagpiakldlaerfrwltaprstviqtsevh 99 
                 Yavir+vPrver+E++NvGV+l+++ ++fl++r++ld +R+ral+p++dl+++ ++l +++++c ge   gp ++++ +erfrwl+aprst+iqt++vh
  KIR62124.1  15 YAVIRLVPRVERGERINVGVILYCQGRDFLAARTHLDADRVRALAPDVDLAEVAAALGSWDRTCVGE---GPSGRMRRGERFRWLAAPRSTMIQTGPVH 110
                 9***************************************************************887...8999************************* PP

     DUF3037 100 tgltedpeaelerLfeelV 118
                 tglt dp+ael+rL+e lV
  KIR62124.1 111 TGLTVDPAAELDRLLEALV 129
                 ****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 994.10
//
Query:       KIR62125.1  [L=396]
Description: low temperature requirement protein A [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-84  283.6  39.7    2.7e-84  283.4  39.7    1.0  1  LtrA      Bacterial low temperature requirement A protein (Lt
  ------ inclusion threshold ------
      0.039   13.8   0.6       0.18   11.6   0.0    2.3  3  TMEM61    TMEM61 protein family


Domain annotation for each model (and alignments):
>> LtrA  Bacterial low temperature requirement A protein (LtrA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.4  39.7     3e-88   2.7e-84       1     353 []      10     378 ..      10     378 .. 0.96

  Alignments for each domain:
  == domain 1  score: 283.4 bits;  conditional E-value: 3e-88
        LtrA   1 rvswlELFFDLvfVvavtqlthalahdltge...........gllrflllffavwwaWvgftwlanrfdtddvvvrllllvqmaavlvlalsipeafee 88 
                 r+++lELFFDLv+V+a+t+++++  +dl+ e           g +++lll++a+w +W+g++w ++r+d+ +   + +++++++a +v+ ++ip+af  
  KIR62125.1  10 RATFLELFFDLVYVFALTRVSARAFEDLAVEaggtsgwspftGTGKTLLLLLALWSVWQGTAWTTSRYDPYHFGLQAVVVTALVASMVMGVAIPRAFTV 108
                 79***************************9999****************************************************************** PP

        LtrA  89 rglvfalayvvmrlvlvlqylraaradpklsarrlarvyaagllisavlwlagallpgsarlvlwlvalliel......llvPllarkr..ttpvhaeH 179
                 +gl fa+ayvv+++++ l+ l+a+ ++++   r+l  ++++ +l+  vlwl+ga+lp+++r+vlw++al+ e+      + vP+l+r+r  +++v +eH
  KIR62125.1 109 SGLAFAAAYVVAQVTRPLLLLVALGQHEY---RQLKLRMLITYLFLGVLWLTGAFLPTNPRVVLWAAALAGEYlasrfgWPVPGLGRSRvnRWQVIGEH 204
                 ************************99995...88888889*************************************************855******* PP

        LtrA 180 laERygLfvIIaLGEsvvalgaglseqelsvevllaavlglvlaaalwwlYFdv.daaaaehaltsarrarlarsaygylhllivagiillavglelll 277
                 laERy++f++IaLGE+++++g + s++++ ++  +a+   +v++++lw +YF++ ++   e++++++r+a++ rsa + +hl++v+g++++a+g+el +
  KIR62125.1 205 LAERYQQFFLIALGETILVVGLAYSAHPFGLARTVAFGTDIVISVLLWRIYFQRaGQILPEAVAKATRPAVIGRSA-ADTHLVMVIGLTATAIGYELTI 302
                 ******************************************************6666666666666666666555.99******************** PP

        LtrA 278 ahpeelldlaaalllfggvalfllgllllkrvllgsvslsrlvllllllallalalvlaallalallalvllllaa 353
                 +hp ++ ++a++++++gg+++fl+g++ +++ ++g+vs+sr +++l+lla+++++l++a+l+ +a++al+ll++a+
  KIR62125.1 303 EHPLGHPAAAWIAMVVGGPVIFLAGRARFEYEVFGRVSRSRWIAALALLAAVPVLLHVATLVSAAAAALALLAVAV 378
                 ***********************************************************************99985 PP

>> TMEM61  TMEM61 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     2e-05      0.18      63      93 ..      52      83 ..      48     106 .. 0.85
   2 ?   -2.4   0.0      0.39   3.5e+03      58      77 ..     211     230 ..     208     233 .. 0.86
   3 ?   -2.7   0.0      0.49   4.4e+03       7      23 ..     315     331 ..     313     337 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2e-05
      TMEM61 63 gaGGlllllGllwsi.kastrgsprwdpyrls 93
                g+G  llll  lws+ + +++ ++r dpy++ 
  KIR62125.1 52 GTGKTLLLLLALWSVwQGTAWTTSRYDPYHFG 83
                78889999999***944567899*******96 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.39
      TMEM61  58 sflccgaGGlllllGllwsi 77 
                  f+ ++ G  +l++Gl +s 
  KIR62125.1 211 QFFLIALGETILVVGLAYSA 230
                 599999999******99985 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.49
      TMEM61   7 cmtvsGtvvlvaGtlcf 23 
                  m+v+G v+++aG   f
  KIR62125.1 315 AMVVGGPVIFLAGRARF 331
                 599*********97666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2764.63
//
Query:       KIR62126.1  [L=674]
Description: peptidase M6 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-09   36.8   2.6    1.8e-06   26.7   1.5    2.1  2  Peptidase_M6  Immune inhibitor A peptidase M6
    0.00073   19.6   0.1     0.0037   17.3   0.0    2.1  2  7TMR-DISMED2  7TMR-DISM extracellular 2


Domain annotation for each model (and alignments):
>> Peptidase_M6  Immune inhibitor A peptidase M6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   4.2e-05      0.37      46     106 ..     119     174 ..      69     199 .. 0.74
   2 !   26.7   1.5     2e-10   1.8e-06     220     270 ..     282     334 ..     276     346 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 4.2e-05
  Peptidase_M6  46 qehyqdllfgsegytgpdgenvkslkqyyekqsggsysvdGevadWlkvpknaaryGsnss 106
                   ++ yqd+l ++   t+ +g   ++l++y+ ++s g+y vd    + +++p +  +yG ++s
    KIR62126.1 119 PKFYQDFLNTP--NTLNKG---HTLHEYWMQDSNGRYGVDLAGFGPYQMPAKSYQYGLDNS 174
                   46788877665..455555...5899*******************************8843 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 2e-10
  Peptidase_M6 220 qPedgavGvfaheyGhDLGLPDeyDtkytG..kgepvgyWslmssGsWaGkia 270
                   q e +++Gv+ahe  h LG+ D+y+  y    +   +g+Ws+ms Gs+ G ++
    KIR62126.1 282 QGESSGMGVYAHELTHLLGIGDNYNNPYGEplRRAYTGIWSMMSRGSFNGPGG 334
                   66889*********************99753346779***********99765 PP

>> 7TMR-DISMED2  7TMR-DISM extracellular 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       0.3   2.7e+03      26      46 ..     124     143 ..     114     144 .. 0.80
   2 !   17.3   0.0   4.1e-07    0.0037      51      92 ..     455     495 ..     450     543 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.3
                   G-EE-SSSEEEE-SECEEEEE CS
  7TMR-DISMED2  26 rfepseaevlnfgytssayWl 46 
                   +f  ++ ++ln g+t + yW+
    KIR62126.1 124 DF-LNTPNTLNKGHTLHEYWM 143
                   55.678899***********7 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 4.1e-07
                   -.--SS-EE..EEEE-TT-SEEEEEEECTCEEEEEEESTTS- CS
  7TMR-DISMED2  51 enptdaprrwllelayplldevdlYvpdggslrearlGdlrp 92 
                   +n+ +ap +w+++ +++ +d++d+Y pd g  +++ +Gd r+
    KIR62126.1 455 KNADSAPFQWVVDANPQDIDMIDFYRPD-GTPQKITMGDYRQ 495
                   7999***********************8.6889999***998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4677.81
//
Query:       KIR62127.1  [L=247]
Description: hypothetical protein TK50_25535 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-21   75.9   0.7    2.7e-12   47.5   0.2    2.9  2  Sulfotransfer_3  Sulfotransferase family
    1.9e-15   57.1   0.0    3.5e-15   56.2   0.0    1.4  1  Sulfotransfer_1  Sulfotransferase domain
  ------ inclusion threshold ------
      0.039   13.5   0.0        1.9    8.0   0.0    2.1  2  Sulphotransf     Stf0 sulphotransferase


Domain annotation for each model (and alignments):
>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   2.5e-09   1.5e-05       1      29 [.       2      31 ..       2      53 .. 0.78
   2 !   47.5   0.2   4.6e-16   2.7e-12      97     214 ..      54     197 ..      34     201 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 2.5e-09
                     -.EEEE--TTSSHHHHHHHHHTSTTEE--S CS
  Sulfotransfer_3  1 P.ifivGlpRSGTTlLhrlLaahpdvripe 29
                     P + i+G +R GTT Lh  Laahpdvr+++
       KIR62127.1  2 PdFLIIGGQRCGTTSLHHYLAAHPDVRAAT 31
                     5589*********************88764 PP

  == domain 2  score: 47.5 bits;  conditional E-value: 4.6e-16
                      HHHTTTSEEEEEESSGGG-HHHHHH...HBSSEEEEEEE--H.HHHHHHHHHTT--------................--..-.HHH.HHHHHH CS
  Sulfotransfer_3  97 rvpsyarwlvdKsPshlfrldllle...lfPdAkfihlvRdpvdtvlssyvslfgkkresys................edsld.ele.daleew 169
                      +  ++ r+ ++ sP +lf+ +  ++   ++P+A+f+ l+Rdpv++++s y++  +   e+++                 d  d ++   al+ +
       KIR62127.1  54 PPAAPGRRSFEASPYYLFHPGVPARvaaTLPEARFVALLRDPVERAYSHYLHTRSYGLEPLGfaealaaepgrlaaalADGPDtPAAhHALRNF 147
                      44455566677899999987765542228*******************************9999999999999998885555554444666666 PP

                      HHHHHHHHHHHHH.....S-TTSEEEEEHHHHHH-HHHHHHHHHHHHT-- CS
  Sulfotransfer_3 170 arayerllaarar.....lppdrfldvrYedLvadpegtlrriyeflglp 214
                      + a +  +a++       lp++r++ +r edL adp  t   +++flgl+
       KIR62127.1 148 SYAARGRYAEQLDrwyahLPAERLHVIRSEDLYADPATTYAGVLRFLGLD 197
                      665543333333346666******************************98 PP

>> Sulfotransfer_1  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   5.9e-19   3.5e-15       2     197 ..       2     197 ..       1     211 [. 0.78

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 5.9e-19
                      TSEEEEESTTSSHHHHHHHHHHHHTTTCCHHHTSSGHCT-HHHSCBTTHECCTSGCCGTTECCCHHHTTTEEHHHHHHHSTSS..EEEE...GG CS
  Sulfotransfer_1   2 ddvlivtypKSGTtwlqellslitsegdfekaeepalfnardrspfLelydlyfpnslkppdhlrsyshvaekvvrlralesp.rllktHlplk 94 
                      +d+li++ +++GTt l++ l ++++++++ + +e ++f   ++ ++  +y+ +fp+  +  +       ++ ++  l +   p r+  t     
       KIR62127.1   2 PDFLIIGGQRCGTTSLHHYLAAHPDVRAA-TGKELQFFSL-HYGRGPRWYRAHFPPAAPGRR------SFEASPYYLFHPGVPaRVAAT----- 82 
                      79*************************99.799****998.7777779*9999997777772......222222222222222023334..... PP

                      GS.CHHHHTT-EEEEEE--HHHHHHHHHHHHHHBT......................TSTTT-S.-HHHHHHHHHTTHSTTC-HHHHHHHHHHH CS
  Sulfotransfer_1  95 llpkslldsnlKiiylvRnpkdvavSryhfsrslk......................klkepet.pfeeffdlflegrvvcgsyfdhvkswlkl 165
                              + ++ + l+R+p ++a+S y ++rs +                      +   p+t     ++ +f       g y++++ +w+ +
       KIR62127.1  83 -------LPEARFVALLRDPVERAYSHYLHTRSYGleplgfaealaaepgrlaaalaD--GPDTpAAHHALRNF--SYAARGRYAEQLDRWYAH 165
                      .......9*************************9999998888887777777776442..23331122333333..6999************** PP

                      TTTTTEEEEEHHHHHHHHHHHHHHHHHHTT-- CS
  Sulfotransfer_1 166 rkkgnvlflrYEdlkkdpakeikkiaeFlGip 197
                       + ++++++r Edl +dpa +   +++FlG++
       KIR62127.1 166 LPAERLHVIRSEDLYADPATTYAGVLRFLGLD 197
                      ******************************97 PP

>> Sulphotransf  Stf0 sulphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0    0.0065        39       2      33 ..       4      39 ..       3      70 .. 0.74
   2 ?    8.0   0.0   0.00031       1.9     173     225 ..     154     207 ..     117     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0065
  Sulphotransf  2 YlvcasqRsGstLLvelLrat....gvaGePdeffq 33
                  +l+++ qR G t L ++L+a     +++G+  +ff 
    KIR62127.1  4 FLIIGGQRCGTTSLHHYLAAHpdvrAATGKELQFFS 39
                  79****************985222256666666665 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00031
  Sulphotransf 173 aqeeeWraWFaeegiepld.isyealvaapvavvaavlealgldpelakdvkpa 225
                   ++ e+   W+a+   e l+ i  e+l a+p  + a vl+ lgldp +  + + +
    KIR62127.1 154 RYAEQLDRWYAHLPAERLHvIRSEDLYADPATTYAGVLRFLGLDPYTPAEFARH 207
                   567788889999999999735789********************9876655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1659.74
//
Query:       KIR62128.1  [L=310]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-18   65.9  16.1    3.6e-18   65.9  16.1    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.033   14.0   0.1        1.8    8.4   0.0    2.8  2  DUF5596       Domain of unknown function (DUF5596)
      0.045   13.9   0.1       0.12   12.5   0.1    1.8  1  TM_PBP2_N     N-terminal of TM subunit in PBP-dependent ABC t


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.0      0.28   1.7e+03      26      44 ..      41      77 ..      27     101 .. 0.47
   2 !   65.9  16.1   6.1e-22   3.6e-18       2     181 ..     103     306 ..     102     309 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.28
  BPD_transp_1 26 vllslPsfvlaillvlvf....................v 44
                  + +s+ ++++a+ l   f                    +
    KIR62128.1 41 LAMSVFPLLWALYLS--FtdysatrggpanfvgfgnytA 77
                  233333333333333..2345555555544444444443 PP

  == domain 2  score: 65.9 bits;  conditional E-value: 6.1e-22
  BPD_transp_1   2 illGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvf...................vilsilghlilpviillllsaapyvrlirraalr 77 
                   ++lG+ +a   +r+  ++ ll++l+ v+++l ++v+++++ +++                    +l+   ++  ++i++ +++++p+++li  a+l 
    KIR62128.1 103 TVLGFTIAylISRRTHGRGLLTTLFLVPMMLSPVVVGLFWRFMLdaqfgvvnsmlgsigleqvEWLTRQRTALVSLIVVDTWQWTPFIMLIALAGLT 199
                   68999***999999***************************999******************6666666666666********************** PP

  BPD_transp_1  78 slpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG...lgtllleailgydyseisnggvlalviavlllnlv 171
                   ++p+ l+eaa ++ as+w +fr+++lP++ p ++  ++++++ ++  + l+++l+++++     tl ++++    + +++ ++++ ++++vl+++++
    KIR62128.1 200 AVPRYLYEAASIDRASEWFRFRTITLPLVWPLLLIAVLFRAIEAFRLFDLVYILTNGGPgvsTETLSFHVYKVAFLGFNTGTASAYGILMVLVVVVL 296
                   ******************************************************9876675555555555555555555577777778888888888 PP

  BPD_transp_1 172 adilqrlldp 181
                   + +  r+l++
    KIR62128.1 297 TQLYLRYLNK 306
                   8888888876 PP

>> DUF5596  Domain of unknown function (DUF5596)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.025   1.5e+02      45      72 ..      98     125 ..      74     127 .. 0.86
   2 ?    8.4   0.0    0.0003       1.8      57      79 ..     149     171 ..     144     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.025
     DUF5596  45 eifwaTladlgrfvaehrrkhGrygldr 72 
                 ++++ T   ++    + rr+hGr+ l++
  KIR62128.1  98 AVSLQTVLGFTIAYLISRRTHGRGLLTT 125
                 6889999999999999*******98876 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0003
     DUF5596  57 fvaehrrkhGrygldrafWltrh 79 
                 ++ +  ++ G++gl++ +Wltr+
  KIR62128.1 149 QFGVVNSMLGSIGLEQVEWLTRQ 171
                 666777899*************8 PP

>> TM_PBP2_N  N-terminal of TM subunit in PBP-dependent ABC transporters
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.1e-05      0.12       1      23 [.      38      60 ..      38      65 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
   TM_PBP2_N  1 llLlvfqvfpvlyTistafTNyG 23
                llLl+ +vfp+l+ ++++fT y+
  KIR62128.1 38 LLLLAMSVFPLLWALYLSFTDYS 60
                79*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2144.01
//
Query:       KIR62129.1  [L=243]
Description: cobalt transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-13   51.0  10.5    2.6e-12   46.9  10.5    2.0  1  Cation_efflux  Cation efflux family


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9  10.5   1.5e-16   2.6e-12       6     188 ..      33     201 ..      27     205 .. 0.87

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.5e-16
  Cation_efflux   6 lanlilalvelivglltnSlalladafhslsdlvsllllllalklsrkppderfpfGygrlevlgalvsgllllglavfllleaiqklikegerei 101
                      n++ a+v + +g ++ S+al+  ++ s++++ s   + +a  ++ ++p           e  +  v ++ +++la+++ +e++  l+ +g + +
     KIR62129.1  33 TYNVVEAVVAISAGTIASSTALIGFGLDSVIEVSS--AAAVAWQFAGRDPE--------AREKTALRVIAVSFFALAAYVTVESVRALL-GGADAD 117
                    56777889999999999999999999999999444..34444455645444........457778888999******************.****** PP

  Cation_efflux 102 haglalvvalvslvvnlalllilrragrklrsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvaslligliilysal 188
                    h+++ lv+a++sl+v+  l ++ rragr+l+s +  a++ ++l  ++ s++ lv++ +  +f   ++ +aDp+a+l+i+++ ++ ++
     KIR62129.1 118 HSPVGLVLAALSLAVMPGLSYAQRRAGRELGSRTAVADSRQTLLCTYLSAVLLVGLGLNAMF---GWSWADPLAALVIAAVAVKEGR 201
                    **************************************************************...559*************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 1979.06
//
Query:       KIR62130.1  [L=277]
Description: aldo/keto reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-47  161.3   0.0    3.5e-34  118.3   0.0    2.0  2  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.0     2e-38   3.5e-34       1     195 [.      11     209 ..      11     212 .. 0.90
   2 !   41.2   0.0   6.3e-15   1.1e-10     230     290 ..     216     276 ..     214     277 .] 0.96

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 2e-38
                   .EEEE-SSS-ST..TS-HHHHHHHHHHHHHTT--EEE--TT-..TTTHHHHHHHHHHHH-TTTGGG-EEEEEE...--SSSTTSSSS-HHHHHHHHH CS
  Aldo_ket_red   1 elglGtwqlgsk.eeiskeealellrraleaGinffDtAevY..gkgqseellGealkksrkkreeviiatKv...dlrdaeiksglskeniresle 91 
                   +lg+G+++l  + ++ ++e+a+ +lr a++ G+n++DtA +Y  g+ +s e++ +al        +++iatKv     +   + +  +++++r+ +e
    KIR62130.1  11 RLGFGAMRLAFGgSVRDPETAATVLRSAVDSGVNHIDTAGFYgfGDLHSHEVIRQALFP---YPADLVIATKVgpvIEGGVVPTAEAKPDQLRQLVE 104
                   59********99777788888888******************99999************...9**********74422223455677888******* PP

                   HHHHHHT-S-EEEEEE-S--TTS-......HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT CS
  Aldo_ket_red  92 eslkrLgtdyvDllllHrpdpslp.....sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkg 183
                   e l+rLg+d++Dl++l     ++      si + ++al++l++eG+ir++GvSn+++eql +a  ++  +++avq+++++   + +++l+  c+k g
    KIR62130.1 105 EDLRRLGVDRLDLVYLRVGG-ATAapggvSIGDRFAALAQLREEGLIRHLGVSNVDAEQLAEA--QAIAPVAAVQNQFHVH-FRGDSELVAQCAKDG 197
                   ****************5554.44448999********************************99..***************9.89999999999999* PP

                   -EEEEBSTTGGG CS
  Aldo_ket_red 184 vpliaysplggG 195
                   ++ +++ p+ggG
    KIR62130.1 198 IAYVPFFPVGGG 209
                   **********99 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 6.3e-15
                   HHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHH CS
  Aldo_ket_red 230 eelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeld 290
                   ++l+++a+ hg +  q+al+++l+ ++ + +ipg+s +++l++n++a  l l++e++a+l 
    KIR62130.1 216 DRLKAVAERHGATTRQVALAWLLAVSPAILAIPGTSVLDHLTENIAAAGLALTDEDMAALS 276
                   6799******************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2026.90
//
Query:       KIR62131.1  [L=473]
Description: hypothetical protein TK50_25670 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.6e-158  522.9   0.0    7.3e-83  277.0   0.0    2.0  2  Hexose_dehydrat  NDP-hexose 2,3-dehydratase
  ------ inclusion threshold ------
       0.14   12.3   0.0        4.8    7.4   0.0    2.5  2  tRNA_int_end_N2  tRNA-splicing endonuclease subunit sen54 N-t


Domain annotation for each model (and alignments):
>> Hexose_dehydrat  NDP-hexose 2,3-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.0   0.0   8.2e-87   7.3e-83       2     204 .]      22     224 ..      21     224 .. 0.99
   2 !  244.2   0.0   8.8e-77   7.9e-73       2     204 .]     267     469 ..     266     469 .. 0.97

  Alignments for each domain:
  == domain 1  score: 277.0 bits;  conditional E-value: 8.2e-87
  Hexose_dehydrat   2 aevlswlterraaeeleveriplaelkgWsleedt.niahesgrfFsVegveveaeereveeWtqPlieqpeigilgllvkeidgvlhfLvqak 94 
                      +e+ +wl+er+a+ +++ve++pl++l gW++++++  ++h+sg+fFsV gv+v+  +r  ++W+qP+i+q+e+gilgll+ke++gvlhfL+qak
       KIR62131.1  22 EEFSAWLREREATDSMTVEQVPLDDLLGWHFSAGRaALVHDSGKFFSVGGVDVSRTGRGPRSWQQPIIRQNEVGILGLLAKEFGGVLHFLMQAK 115
                      6899****************************************************************************************** PP

  Hexose_dehydrat  95 aEpGnldlveLsPTvqatrsnytkahkgrkppyldefleaerervlvdvlqSEeGgrFyrkrnrnliveveedveelpddfrWltlgqlkeLlr 188
                      +EpGn   v+LsPTvqatrsnytk+h+g+++pyl++fl+++r+rvl+dvlqSE+G++F+ krnrn++ve+++dv+ + d+frWlt+gq+++Ll 
       KIR62131.1 116 IEPGNRRQVQLSPTVQATRSNYTKVHGGASTPYLEHFLRPGRGRVLADVLQSEQGTWFLGKRNRNMVVETTDDVP-VRDNFRWLTFGQIRQLLT 208
                      ***************************************************************************.****************** PP

  Hexose_dehydrat 189 ednlvnvqaRsllscl 204
                      + n++n+++R++lscl
       KIR62131.1 209 VPNMINMDSRTVLSCL 224
                      ***************8 PP

  == domain 2  score: 244.2 bits;  conditional E-value: 8.8e-77
  Hexose_dehydrat   2 aevlswlterraaeeleveriplaelkgWsleedtniahesgrfFsVegveveaeereveeWtqPlieqpeigilgllvkeidgvlhfLvqaka 95 
                      ae++swl++ r ++++ev+ + la+l++W+l++++ i+h++g++F+V+gv+v++ +rev++W qPli+++++g++++l+++i+gvlh+L++a +
       KIR62131.1 267 AEIISWLNDVRIDTTIEVRPVGLAQLEDWELSRSR-IEHRQGKHFRVIGVSVASGQREVTQWAQPLIAPCDVGLVAFLTRRINGVLHILMRASV 359
                      799********************************.********************************************************** PP

  Hexose_dehydrat  96 EpGnldlveLsPTvqatrsnytkahkgrkppyldefleaerervlvdvlqSEeGgrFyrkrnrnliveveedve..elpddfrWltlgqlkeLl 187
                      E+G+ld+ eL+PT+q++++ y++++ +++p+++d++l+a+ +++++dvl+SEeGgrFy+++ r+l++e++++ +  e ++dfrW+t++ql +Ll
       KIR62131.1 360 EAGFLDVAELGPTLQCNPATYADLPPQERPRFYDYVLAAR-DNIRYDVLLSEEGGRFYHAECRYLVLECDAEPAvlEPHPDFRWMTVRQLMALL 452
                      *************************************986.8***************************5544437999*************** PP

  Hexose_dehydrat 188 rednlvnvqaRsllscl 204
                      r+ n+vnvqaR+ll+cl
       KIR62131.1 453 RHHNYVNVQARTLLACL 469
                      ****************8 PP

>> tRNA_int_end_N2  tRNA-splicing endonuclease subunit sen54 N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.027   2.4e+02      18      45 ..      49      73 ..      42     102 .. 0.71
   2 ?    7.4   0.0   0.00053       4.8      25      47 ..     298     318 ..     256     331 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.027
  tRNA_int_end_N2 18 aiwfprdrvvvvespkarGkhfktmGvs 45
                     ++ f+ +r + v+ +  +Gk+f+  Gv 
       KIR62131.1 49 GWHFSAGRAALVH-D--SGKFFSVGGVD 73
                     5566555555554.5..8**99887754 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00053
  tRNA_int_end_N2  25 rvvvvespkarGkhfktmGvsra 47 
                      ++ ++e  + +Gkhf+ +Gvs+a
       KIR62131.1 298 SRSRIE--HRQGKHFRVIGVSVA 318
                      678999..66*********8853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3127.02
//
Query:       KIR62132.1  [L=498]
Description: hypothetical protein TK50_25680 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-29  102.8   4.1      2e-29  102.1   4.1    1.4  1  FAD_binding_4  FAD binding domain
    4.5e-14   52.3   0.2    7.6e-14   51.5   0.2    1.4  1  BBE            Berberine and berberine like


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   4.1   2.2e-33     2e-29       1     139 []      64     196 ..      64     196 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 2.2e-33
                    EEEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTC CS
  FAD_binding_4   1 paavvrpeseeevaaalrlaneaglpvlvrGgGssllgqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgi 96 
                    paa+++++s+++v+ +l++a+ +glp ++r+gG+s++g ++ t+g+v+d+srln+ ++++  ++  +v++G++l dlv  ++a+g +l    g + 
     KIR62132.1  64 PAAIAYCTSPKDVQVCLAYAQHHGLPAVPRSGGHSFGGYST-TNGLVIDVSRLNG-IQVE--QNKTVVGPGAQLVDLVDTASAHGVALA--GGICP 153
                    899*************************************8.*************.6777..68889*********************9..9**** PP

                    GSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEEE CS
  FAD_binding_4  97 pgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrls 139
                    ++ +GG++ ++++G++ +  Gl +d +l+++vvladG vv++s
     KIR62132.1 154 TVAMGGYLQGGGVGWQTRALGLGCDSLLSAQVVLADGCVVTCS 196
                    *****************************************96 PP

>> BBE  Berberine and berberine like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.2   8.5e-18   7.6e-14       2      45 ..     455     497 ..     454     498 .] 0.97

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 8.5e-18
                 -TTS--GGG-HHHHHHHHGGGHHHHHHHHHHH-TT--S--TT-- CS
         BBE   2 YvNyrdldlgkewgerYFggNferLvkvKtkyDPdNvFrneqsI 45 
                 Y Ny d+ l+ +w e+Y+ +N++rL  vK +yDP  +F ++q+I
  KIR62132.1 455 YQNYVDPALT-DWREAYYAENYPRLSTVKHTYDPHGFFSFAQAI 497
                 99********.*******************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3826.51
//
Query:       KIR62133.1  [L=197]
Description: hypothetical protein TK50_25695 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-13   50.4   2.3    1.7e-13   50.4   2.3    1.9  2  TetR_C_14  MftR C-terminal domain
    2.4e-11   43.2   1.1    4.3e-11   42.4   0.1    1.9  2  TetR_N     Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.046   14.2   1.1       0.41   11.1   0.0    2.3  3  DUF3681    Protein of unknown function (DUF3681)
      0.066   13.3   0.0       0.14   12.3   0.0    1.5  1  HTH_AraC   Bacterial regulatory helix-turn-helix proteins, Ar


Domain annotation for each model (and alignments):
>> TetR_C_14  MftR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2      0.47   2.1e+03      22      62 ..      24      39 ..       4      59 .. 0.54
   2 !   50.4   2.3   3.9e-17   1.7e-13       1     112 []      78     191 ..      78     191 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.47
                HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
   TetR_C_14 22 eeehrrRmrLiltvPaLqAhstlryaawrevvAefvAeRtg 62
                + +   R                          e +A+R g
  KIR62133.1 24 RGWDNVR-------------------------VEDIAARAG 39
                3333333.........................333344444 PP

  == domain 2  score: 50.4 bits;  conditional E-value: 3.9e-17
                 S-HHHHHHHHHHH.TT---GGGHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TT.SHHHHHHHHHHHHHHHHHHHHHHH-TT.S-H CS
   TetR_C_14   1 lplldalreAvla.fnrvdeeeeeehrrRmrLiltvPaLqAhstlryaawrevvAefvAeRtgtdad.dlvprtvaaavlaaalaayeqwladed.adl 96 
                 +pl +a+ +A+la f + d+ ++ ++ +++rL  ++  L ++  +++aa ++++Ae +AeR+g+  + d++pr++a +v+ a+++a+e w+++   ++l
  KIR62133.1  78 EPLTQAVINAMLAaFLAWDNLDR-DLVTKVRLAVATSPLGGEYLKAHAARETALAEGIAERLGMGLHdDIYPRLLATMVVNAVRVAVEFWVDSSRaTSL 175
                 58999********7777777665.67889***********************************9776**************************9899* PP

                 HHHHHHHHHHHHH-ST CS
   TetR_C_14  97 aelLdealdllaagla 112
                 ++ +++ l+++a+gl+
  KIR62133.1 176 SDAIRDTLERIAPGLP 191
                 *************996 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.1   9.7e-15   4.3e-11       3      42 ..      15      54 ..      13      59 .. 0.94
   2 ?   -1.6   0.1      0.54   2.4e+03      21      28 ..     133     140 ..     124     141 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 9.7e-15
                HHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHH CS
      TetR_N  3 daArelfaerGydattvreIAkrAGvskgalYryFpsKee 42
                +aA+ l  erG+d++ v++IA+rAG+s +++  yF+sK e
  KIR62133.1 15 EAALGLAVERGWDNVRVEDIAARAGMSTRSFNNYFRSKNE 54
                79************************************76 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.54
                 HHHHHHTS CS
      TetR_N  21 eIAkrAGv 28 
                  IA+r+G+
  KIR62133.1 133 GIAERLGM 140
                 58999987 PP

>> DUF3681  Protein of unknown function (DUF3681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.5   1.6e+04      18      25 ..      15      22 ..       6      28 .. 0.52
   2 ?    1.4   0.0     0.097   4.3e+02      55      87 ..      83     115 ..      80     117 .. 0.86
   3 ?   11.1   0.0   9.1e-05      0.41      30      69 ..     132     171 ..     116     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.5
     DUF3681 18 aaalllal 25
                 aal la+
  KIR62133.1 15 EAALGLAV 22
                33444433 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.097
     DUF3681  55 GlaeasvgfWvsgdperrravGktvlwvsvlpl 87 
                 ++++a+++ +++ d+ +r  v k+ l v+  pl
  KIR62133.1  83 AVINAMLAAFLAWDNLDRDLVTKVRLAVATSPL 115
                 57889999999999999****999999987775 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 9.1e-05
     DUF3681  30 ggvflrhgkallylYYgiLvavvvfGlaeasvgfWvsgdp 69 
                  g+  r g++l    Y  L+a++v+ ++ ++v fWv++++
  KIR62133.1 132 EGIAERLGMGLHDDIYPRLLATMVVNAVRVAVEFWVDSSR 171
                 688888899999999*********************9886 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.1e-05      0.14       8      31 ..      28      51 ..      27      53 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.1e-05
                T--HHHHHHHTTSSHHHHHHHHHH CS
    HTH_AraC  8 nltiediAdelgfSrsyFsrlFkk 31
                n ++ediA+ +g+S + F   F++
  KIR62133.1 28 NVRVEDIAARAGMSTRSFNNYFRS 51
                789***************987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1443.46
//
Query:       KIR62134.1  [L=348]
Description: hydrolase superfamily dihydrolipoamide acyltransferase-like protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-14   51.7   0.0    8.2e-14   51.2   0.0    1.1  1  DUF1100   Alpha/beta hydrolase of unknown function (DUF1100)


Domain annotation for each model (and alignments):
>> DUF1100  Alpha/beta hydrolase of unknown function (DUF1100)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   4.6e-18   8.2e-14      93     377 ..      28     289 ..      10     299 .. 0.82

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 4.6e-18
     DUF1100  93 Gnwiyewaklgmlhqkkaaeekdeeaaeellaaallysiagyphlkgdnlalqaqvlanrayeeaakklkyvlkqlelpvekkkitgflhlpktdkplp 191
                 G w+ ew++ +     +a e+++     +ll+a+  y++a +p + g   a q          +  ++ +  + +le+ ++ ++++++          p
  KIR62134.1  28 GSWAAEWTRSA-----RALERDG-----RLLDACRHYTMARFPFVDGP--ARQRALDDTVRTFDQWRRGDRDIERLEVDLPTGRVVAWATGMSDGVRRP 114
                 66777776654.....5555554.....6899999********98654..55543333333345567888899************9999888888899* PP

     DUF1100 192 vvlvsaGldslqtdmyrlfrdylakkdiamltidlpsvGasskwkltedssllhqavlkeladvpyvdhtrvgliGfrfGanvavrlaflesekvkavv 290
                 v++vs+G+ +++  + +   + + + ++a +  ++p vG     +  +ds ++  ++l+++ d    d t   ++ + f +  a r a le+++++av 
  KIR62134.1 115 VLIVSGGIVTVKEQWASTL-RAIRRLGMAGIVTEMPGVGEN-TLPYDQDSWRMLSHLLDHVSDRA--DVTDSYALALSFSGHLALRCA-LEDSRIRAVL 208
                 **********997766655.568999*************86.689****************9976..555566788899*******87.9********* PP

     DUF1100 291 alGavvhdlltsskklqkvpkmyldvlasrlGksdvdieslsgelnayslkvqGllsgrrtktpilalslegdpvspkednklvalf 377
                 + Ga++ +l+t+ + ++++p + +d la  +Gk++ +     gel +++l    l   r   +p+  +  + d + p  d  l+a  
  KIR62134.1 209 TAGAPIDTLFTDRRWQANLPRITVDTLAHLMGKEAGS---ALGELPSWALSPDQL---RALTIPVRYVACDRDEIIPGADVDLLARH 289
                 *********************************8764...568999999987654...57788888888888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2341.84
//
Query:       KIR62135.1  [L=491]
Description: hypothetical protein TK50_25720 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-69  232.7   0.0      9e-69  232.4   0.0    1.1  1  FAD_binding_3   FAD binding domain
    2.8e-15   56.8   4.3    1.6e-07   31.2   0.2    2.4  2  DAO             FAD dependent oxidoreductase
      5e-08   32.1   0.3    8.2e-05   21.5   0.2    2.2  2  HI0933_like     HI0933-like protein
    1.8e-07   31.6   1.1     0.0012   19.4   0.4    2.5  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    4.9e-07   29.3   1.0     0.0076   15.5   0.3    2.7  3  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.1e-06   28.7   1.0    1.3e-05   25.3   0.1    2.9  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    2.7e-05   23.5   6.9      0.003   16.7   0.8    3.2  3  FAD_binding_2   FAD binding domain
    5.9e-05   22.5   0.0    0.00063   19.1   0.3    2.0  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    0.00053   19.4   4.0      0.006   15.9   0.0    3.0  3  Amino_oxidase   Flavin containing amine oxidoreductase
     0.0022   16.9   1.3       0.74    8.6   0.2    2.1  2  Trp_halogenase  Tryptophan halogenase
     0.0041   16.2   3.2       0.03   13.4   3.2    2.0  1  Lycopene_cycl   Lycopene cyclase protein
  ------ inclusion threshold ------
      0.017   14.4   0.3      0.026   13.7   0.3    1.3  1  Thi4            Thi4 family
      0.017   14.5   0.1      0.017   14.5   0.1    2.1  2  FAD_oxidored    FAD dependent oxidoreductase
      0.034   14.4   0.3       0.64   10.3   0.1    2.6  3  TrkA_N          TrkA-N domain
      0.053   13.2   0.2      0.094   12.4   0.2    1.4  1  ApbA            Ketopantoate reductase PanE/ApbA
       0.11   11.7   0.1        1.1    8.3   0.1    1.9  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.4   0.0     8e-72     9e-69       3     347 ..       4     335 ..       3     337 .. 0.93

  Alignments for each domain:
  == domain 1  score: 232.4 bits;  conditional E-value: 8e-72
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHHCHHCST- CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradlelessper 98 
                    dV+IVGaGp+Glmla +L+ aG  vv++e  s+   +  +  ln   +ell+++Gl d ++aeg    + ++a+          +++l    +++ 
     KIR62135.1   4 DVVIVGAGPVGLMLACELRLAGTPVVVLESGSEPGAQAPGVALNAGVVELLEMRGLMDACRAEGFEFPMAHFAHIWL------DPTQLA--DRYPF 91 
                    8***************************************************************8888776666666......667777..899** PP

                    CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEEEEEEC CS
  FAD_binding_3  99 vtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvldvlfda 194
                      ++p ++l   L+e+a++ g+++r +++v+ ++qdee+v++++    +ge+ tvr++YlvG+DG+ S+vr+++gi f+g e+  + +v+d+ +  
     KIR62135.1  92 NFAIPHSRLVHHLAERARSLGVDLRLGQRVVEVTQDEESVRTRIETP-SGEQ-TVRSRYLVGCDGVDSRVRQAAGIGFPGDEQPFHGTVADLAVGP 185
                    ******************************************99998.5777.*****************************99999999988877 PP

                    -SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEEEEEEEEEEEEESSSEETTEEE-G CS
  FAD_binding_3 195 dlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivgektldveieevsawtvaqrvaekyrkgrvflaG 290
                    d +    +lv  ++ + + v+v P+  +++ +++  e++ e  +r+ + + +e+ + +r+i g +++   + +  +w + +r+ae+yr gr+f+aG
     KIR62135.1 186 DSP--LGELVGAREYPAGLVAVTPMGPGRV-RLLTGEFGVEPPRRDGAPDLAEIQDSVRRIAGVAFTGGTLAWSARWFHVTRLAERYRAGRIFVAG 278
                    777..666677788888889*******555.7889999999999999************************************************* PP

                    GGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHH CS
  FAD_binding_3 291 DAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvd 347
                    DAaH+h P gGq l t++ DavnL+wkLaa l G+A e lLdtY++er++ ++++ +
     KIR62135.1 279 DAAHTHFPLGGQALSTGLDDAVNLGWKLAADLGGRAPEGLLDTYHTERHPAGARACR 335
                    **************************************************9998866 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.6   3.8e-09   4.3e-06       1      38 [.       4      43 ..       4      55 .. 0.91
   2 !   31.2   0.2   1.4e-10   1.6e-07     143     292 ..      95     243 ..      55     279 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3.8e-09
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGG CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSg 38
                dvvi+G+G +Gl  A eL  +g  V++le+g+++g +a g
  KIR62135.1  4 DVVIVGAGPVGLMLACELRLAGtpVVVLESGSEPGAQAPG 43
                9*****************888999***********77766 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 1.4e-10
                 EEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEE.TCEEEEEEECT.EEE.EEEEEEEE--GGGHH..HHHTT...CTTTSEEEEEEEEEEEEEECCTH CS
         DAO 143 vdpakltaalaraaealGveilegtevtgleeed.gkvwgverttp.gen.daadavVnaaGawsd..llgll...keldlpispvrgqvlvlkplsek 233
                 +   +l++ la++a++lGv++++g +v+++ +++    +++  +tp ge+ ++ +++V + G+ s+  +++++   ++     +p+ g+v  l+  ++ 
  KIR62135.1  95 IPHSRLVHHLAERARSLGVDLRLGQRVVEVTQDEeSVRTRI--ETPsGEQtVRSRYLVGCDGVDSRvrQAAGIgfpGDE----QPFHGTVADLAVGPD- 186
                 45589************************965442333445..8888998655599********986444333432222....899999977744444. PP

                 STGSGCSEEEEEEEETTTTEEEEEETTSEEEE.EESSE.EETTCSSTSCSHHHHHHHHHHH CS
         DAO 234 lvspaailpvpetdddgrgvyvtprkdgrvlv.Ggtad.eesgdddpevdeedidelleal 292
                   sp ++  v  +  +++ v vtp+  grv++  g+   e+ + d  ++d ++i++  +++
  KIR62135.1 187 --SP-LGELVGAREYPAGLVAVTPMGPGRVRLlTGEFGvEPPRRDG-APDLAEIQDSVRRI 243
                 ..22.233333399***************99843333246666666.77777777655555 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.2   7.3e-08   8.2e-05       1      37 [.       3      39 ..       3      41 .. 0.95
   2 !    8.5   0.0   0.00064      0.72     110     160 ..      99     151 ..      91     161 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 7.3e-08
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVlllekakklgr 37
                 +dv+++G+G+ Glm A +++ +g  V++le+++++g 
   KIR62135.1  3 HDVVIVGAGPVGLMLACELRLAGTPVVVLESGSEPGA 39
                 59******************************99985 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00064
                  HHHHHHHHHHHHHT-EEE-S--EEEEECETTE..EEEEE..TTEEEEESEEEE CS
  HI0933_like 110 divdallkelkeagvklrletevksvekeedg.kfrvkt.kseeeleadklvl 160
                  ++v+ l +++++ gv+lrl ++v +v+++e++ + r++t ++e+++++++lv 
   KIR62135.1  99 RLVHHLAERARSLGVDLRLGQRVVEVTQDEESvRTRIETpSGEQTVRSRYLVG 151
                  68999*********************887766257888877888999888885 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.4     1e-06    0.0012       2      36 ..       5      40 ..       4      59 .. 0.85
   2 !   10.3   0.0    0.0007      0.78      46      78 ..     104     133 ..      98     140 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1e-06
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.T CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll.r 36
                vv+vG+G +gl+lA++l+  g  V v+e ++++  +
  KIR62135.1  5 VVIVGAGPVGLMLACELRLAGTPVVVLESGSEPGaQ 40
                8****************************9999843 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0007
                 HHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  46 lqeklekngievllntkveeiegsedgvesvkl 78 
                 l+e+ + +g++++l+++v+e++++e+    v++
  KIR62135.1 104 LAERARSLGVDLRLGQRVVEVTQDEES---VRT 133
                 78999*****************99987...443 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   6.8e-06    0.0076     144     178 ..       4      38 ..       3      64 .. 0.73
   2 !   11.2   0.0   0.00014      0.16     188     241 ..     103     159 ..      95     174 .. 0.78
   3 ?   -2.9   0.0       2.8   3.2e+03     270     278 ..     273     281 ..     268     294 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.8e-06
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  ++v+vG+G++G+ lA++l+ +g  v+++e ++++ 
   KIR62135.1   4 DVVIVGAGPVGLMLACELRLAGTPVVVLESGSEPG 38 
                  57888888888888888888888888888877765 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00014
                  HHHHHHHHTTEEEEESCEEEEEEETTEEEE..EEETTSCE.EEESEEEE-S-EEES- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx.xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 188 aleealekeGvevklgtsvkeidgngekle..vvledgee.idadlvvvavGvrpst 241
                   l+e+ +  Gv+++lg++v+e+++++e+++   ++ +ge+ +  +++v + Gv  + 
   KIR62135.1 103 HLAERARSLGVDLRLGQRVVEVTQDEESVRtrIETPSGEQtVRSRYLVGCDGVDSRV 159
                  577899999******************666556665555559999999999988765 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.8
                  TEEE-GGGC CS
                  xxxxxxxxx RF
  Pyr_redox_2 270 giyaiGDva 278
                   i+++GD a
   KIR62135.1 273 RIFVAGDAA 281
                  69*****99 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   1.2e-08   1.3e-05       1      41 [.       7      47 ..       7      65 .. 0.87
   2 ?    0.5   0.0      0.66   7.4e+02      28      55 ..     307     337 ..     286     350 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.2e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECET CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevp 41
                   IvGaG  Gl +A++L+ ag  v++le+++ +G +a  + ++
     KIR62135.1  7 IVGAGPVGLMLACELRLAGTPVVVLESGSEPGAQAPGVALN 47
                   9*********************************9877764 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.66
                    SSSSSGGG-EECETT...CEECTS---EEET CS
  NAD_binding_8  28 rdrlGGraasyevpg...vrvdygahifhgs 55 
                    + +lGGra    ++     r+  ga++ +++
     KIR62135.1 307 AADLGGRAPEGLLDTyhtERHPAGARACRTT 337
                    6789999998866444448888888887775 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.8   2.7e-06     0.003       1      34 [.       4      37 ..       4      45 .. 0.92
   2 !    7.7   0.1    0.0014       1.6     129     189 ..      85     143 ..      44     164 .. 0.77
   3 ?    0.4   0.0      0.24   2.7e+02      95     145 ..     356     420 ..     329     425 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.7e-06
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqef 34
                   Dv+++G+G  GL+ A e++ aG  v+v+e ++e 
     KIR62135.1  4 DVVIVGAGPVGLMLACELRLAGTPVVVLESGSEP 37
                   9****************************99875 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0014
                    STT-.......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEE CS
  FAD_binding_2 129 aadarr.etlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevr 189
                     ad+   +  +++ +l++ l+e+ar++gvd++   +++e++++++ v++  +e p  ++e++
     KIR62135.1  85 LADRYPfNFAIPHSRLVHHLAERARSLGVDLRLGQRVVEVTQDEESVRTR-IETP--SGEQT 143
                    44444446677999****************************99999995.4423..33333 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.24
                    HHHHT.......T----B.......CCTS....SB-EEE-TT-SSTEEEE-.STT-......HHHHHHH CS
  FAD_binding_2  95 eLeel.......gvpfsr.......tedg....pvdvrelGglsatartlhdaadarretlvtghalla 145
                    eL ++       g+++ +       ++ g    p+++r+l g  a ar++++ a a    +  gha+l 
     KIR62135.1 356 ELVRFpavneylGMMVGGtdtrypvEPAGgdahPLAGRRLPGIAAAARSVPGLAEA----WSAGHAVLL 420
                    55554544444444444433333332222455588888888888889999977776....*****9986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.3   5.6e-07   0.00063       1      30 [.       6      34 ..       6      42 .. 0.92
   2 ?    0.8   0.0      0.21   2.4e+02      83     129 ..     100     150 ..      53     175 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5.6e-07
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 +I+GaGP Gl  a+el+ ag   +++lE g
   KIR62135.1  6 VIVGAGPVGLMLACELRLAGT-PVVVLESG 34
                 7*******************9.8*****99 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.21
  Pyr_redox_3  83 aleYlrevaksfelpiklfeeVesvkkedeg..fevetske..tyeAkkvi 129
                  ++++l+e a+s  ++ +l ++V +v++++e+   ++et ++  t+++++++
   KIR62135.1 100 LVHHLAERARSLGVDLRLGQRVVEVTQDEESvrTRIETPSGeqTVRSRYLV 150
                  445555555555555555555555555433322344444432344444443 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.13   1.5e+02       3      27 ..      14      38 ..      14      47 .. 0.95
   2 !   15.9   0.0   5.3e-06     0.006     210     249 ..      98     139 ..      83     153 .. 0.85
   3 ?    1.5   0.1      0.13   1.5e+02     414     434 ..     266     286 ..     242     303 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.13
                   HHHHHHHHHHTTEEEEEEESSSSSB CS
  Amino_oxidase  3 GLaaArqLlsaGfdVtvlEardrvG 27
                   GL+ A +L  aG  V+vlE+ + +G
     KIR62135.1 14 GLMLACELRLAGTPVVVLESGSEPG 38
                   9*******************99888 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 5.3e-06
                    HHHHHHHHH..TTTTEEEETSEEEEEEEEETTCEEEEETTST CS
  Amino_oxidase 210 sqlpealae..elrgldirlntrVkeikregdgvtvtledge 249
                    s+l+++lae  +++g+d+rl++rV e++++++ v++++e+ +
     KIR62135.1  98 SRLVHHLAEraRSLGVDLRLGQRVVEVTQDEESVRTRIETPS 139
                    789**************************8888777777544 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.13
                    HCHHCSTTEEE.SGGGCTTTT CS
  Amino_oxidase 414 akpegdprlffAGehtsreyp 434
                    a+ +  +r+f+AG++ ++++p
     KIR62135.1 266 AERYRAGRIFVAGDAAHTHFP 286
                    4447789********998776 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.2   0.00066      0.74       1      71 [.       4      70 ..       4      95 .. 0.68
   2 !    8.4   0.0   0.00074      0.83     141     214 ..      85     160 ..      57     167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00066
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SS.S---SS-EE--THHHHTHHHHT--HHHHCHHCT-EE CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlvesee.igtvgvGeatipsirkllrlLgideeeflreteatf 71
                    ++vivG+G+ G + A+ l+ a+   + v ++es    g    G a+   +++ll++ g+ ++   r+  + f
      KIR62135.1  4 DVVIVGAGPVGLMLACELRLAG---TPVVVLESGSePGAQAPGVALNAGVVELLEMRGLMDA--CRAEGFEF 70
                    69*****************999...7899999864044555677777777777777777666..55555555 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00074
                     S-B-S--EEEE-HHHHHHHHHHHHHHCT-EEEE-.-EEEEEE-TTS-EEEEEETT.S-EEE-SEEEE-SGGG-III CS
  Trp_halogenase 141 glsalsyAyhldaalyakfLrrvaearGvtrveg.kvvevqldedgrveslrled.greveadlfiDcsGfrglli 214
                      +    + + + ++++ ++L + a + Gv+ + g +vvev++de+   +++++ + +++v  +  + c G  +++ 
      KIR62135.1  85 LADRYPFNFAIPHSRLVHHLAERARSLGVDLRLGqRVVEVTQDEESVRTRIETPSgEQTVRSRYLVGCDGVDSRVR 160
                     5667788999999*****************88873688888888777788988774689***********999875 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   3.2   2.7e-05      0.03       1      36 [.       4      37 ..       4     185 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.7e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   Dvv++GaGp gl lA +l    +g  vv++e++ ++
     KIR62135.1  4 DVVIVGAGPVGLMLACEL--RLAGTPVVVLESGSEP 37
                   9*****************..9999999999998766 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.3   2.3e-05     0.026      18      54 ..       3      38 ..       1      54 [. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.3e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS-- CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspG 54
                 DvvivGaG+ GL  a  l  + +  v++le+   pG
  KIR62135.1  3 HDVVIVGAGPVGLMLACELRLA-GTPVVVLESGSEPG 38
                6*****************9998.999*****987776 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.6e-05     0.017       1     144 [.       4     154 ..       4     168 .. 0.65
   2 ?   -3.4   3.5         4   4.4e+03       6      19 ..     470     483 ..     469     485 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.6e-05
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaeeqvvtgiareflerlrq..rgga.........rlkkrskwn.tfe 85 
                   Dvv+vG+gp G++ A     aG  v+++e     G ++ + ++++ +         +g+++  +++  +  + ++         +l++r+ +n +  
    KIR62135.1   4 DVVIVGAGPVGLMLACELRLAGTPVVVLESGSEPGAQAPGVALNAGVVEL---LEMRGLMDACRAEGFEfpM-AHfahiwldptQLADRYPFNfAIP 96 
                   9**********************************666555554444333...2234444444444433321.112222223212223332223555 PP

  FAD_oxidored  86 pevakavleemlaeagvtvllntrlvevekegkriesvtveskegrktirAkvfiDATg 144
                   ++ +   l e  +  gv++ l++r+vev++++ +    ++e+ +g++t+r+++ + + g
    KIR62135.1  97 HSRLVHHLAERARSLGVDLRLGQRVVEVTQDE-ESVRTRIETPSGEQTVRSRYLVGCDG 154
                   555666666666888***************97.555556666668*******9998855 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4
  FAD_oxidored   6 GGgpaGvaAAiaAa 19 
                   GG++aG+ AA++A 
    KIR62135.1 470 GGDTAGLHAALTAV 483
                   ***********995 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00057      0.64       1      30 [.       5      34 ..       5      50 .. 0.88
   2 ?   -2.3   0.0       4.4     5e+03      14      36 ..     112     133 ..      99     144 .. 0.70
   3 ?    0.8   0.0      0.51   5.7e+02      43      71 ..     430     458 ..     422     471 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00057
                EEEES-SHHHHHHHHHHHHTTEEEEEEESS CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidkd 30
                ++i+G+G vG  la eL+ +g +vvv ++ 
  KIR62135.1  5 VVIVGAGPVGLMLACELRLAGTPVVVLESG 34
                79*****************6657***9975 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.4
                 HHHHHHTTEEEEEEESSHHHHHH CS
      TrkA_N  14 aeeLseggkdvvvidkdeervee 36 
                    L+ g+ +vv + +dee v++
  KIR62135.1 112 GVDLRLGQ-RVVEVTQDEESVRT 133
                 44455555.58888888888876 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.51
                 EEEES-TTSHHHHHHTTGGGESEEEE-SS CS
      TrkA_N  43 evvvgdatdeevLeeagiekadaviaatg 71 
                 ++v g+a +  +L++a + ++da  +++ 
  KIR62135.1 430 RAVSGSAKRVTLLRSAPLPHVDAAAVLLR 458
                 6899******************9988865 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   8.3e-05     0.094       1      27 [.       5      31 ..       5      41 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.3e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtli 27
                ++i+GaG +G +la++L  ag +v+++
  KIR62135.1  5 VVIVGAGPVGLMLACELRLAGTPVVVL 31
                68***************99****9876 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1     0.001       1.1       3      25 ..       3      25 ..       1      38 [. 0.82
   2 ?    1.2   0.0      0.15   1.6e+02      98     153 ..     100     150 ..      85     166 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.001
  K_oxygenase  3 lDligiGiGpsnLsLailleevk 25
                 +D++++G+Gp  L La+ l+ + 
   KIR62135.1  3 HDVVIVGAGPVGLMLACELRLAG 25
                 9****************998666 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.15
  K_oxygenase  98 fedYlrWvasqleeqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlv 153
                    + l++ a++l   +r g++v ev++dee+   + ++e+  ++g e+++++r lv
   KIR62135.1 100 LVHHLAERARSLGVDLRLGQRVVEVTQDEESV--RTRIET--PSG-EQTVRSRYLV 150
                  556778889999988**************863..344444..666.4677777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 3100.85
//
Query:       KIR62136.1  [L=414]
Description: SAM-dependent methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-54  183.9   0.0    2.4e-54  183.5   0.0    1.2  1  Methyltransf_14  C-methyltransferase C-terminal domain
    5.3e-20   71.4   0.5      1e-19   70.5   0.5    1.5  1  Methyltransf_13  Putative zinc binding domain
      8e-19   68.1   0.0    1.5e-18   67.2   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    3.1e-10   40.7   0.0    5.9e-10   39.8   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    1.2e-07   32.3   0.0    2.9e-07   31.0   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    9.7e-07   29.4   0.0    3.7e-06   27.6   0.0    2.0  2  Methyltransf_25  Methyltransferase domain
     0.0014   18.4   0.0     0.0024   17.7   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.017   14.7   0.0      0.031   13.9   0.0    1.4  1  MetW             Methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> Methyltransf_14  C-methyltransferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.5   0.0   1.1e-57   2.4e-54       1     160 []     252     409 ..     252     409 .. 0.99

  Alignments for each domain:
  == domain 1  score: 183.5 bits;  conditional E-value: 1.1e-57
  Methyltransf_14   1 pthGGslrvyaakkeeakkevseavaellaeEkaagldeletyaeFaervekvkeellalllelkaegkkvvgYGAaakgntllnycgigpdll 94 
                      p+hGG++r+++a++  +++++s+ava+lla+E+++gl++++t ++Fa +v ++++el+all++l+aeg++vvgYGA+ak++t+ n+cgigpdl+
       KIR62136.1 252 PVHGGEVRYTLARQ--GSRTPSAAVAQLLAAEREQGLSDMATLRAFAGNVLRIRDELTALLTRLRAEGRSVVGYGATAKSATVTNFCGIGPDLV 343
                      68***********8..9***************************************************************************** PP

  Methyltransf_14  95 dyvvDrnpaKqgkflPgthiPivspeklkeekpdyvlilaWnlkeeileqlaeirekggkfivpvP 160
                      + v+D++p Kqg+++Pg+hiP+ + +++++  pdy++++aWn++eei+++++e++++gg++i++vP
       KIR62136.1 344 HSVYDTTPDKQGRLTPGAHIPVRPASAFSDPYPDYAVLFAWNHAEEIMAKEQEFHQAGGRWILYVP 409
                      ****************************************************************99 PP

>> Methyltransf_13  Putative zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.5   4.6e-23     1e-19       1      62 []      13      72 ..      13      72 .. 0.99

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 4.6e-23
  Methyltransf_13  1 CRiCgsellepvldLgeqplansflkpeqldepepfyplrlvvCedCglvQleevvdpeelF 62
                     CR+Cg+  ++++ldLg+qpl+++f kp++ld+ e +y+l++  C++C +vQl+e+v+++ +F
       KIR62136.1 13 CRVCGGG-VQEFLDLGRQPLSDRFRKPDELDD-EFTYRLAVGRCDSCEMVQLTEEVPRDLMF 72
                     *******.***********************9.****************************9 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.0   6.8e-22   1.5e-18      22     164 ..     105     247 ..      86     248 .. 0.87

  Alignments for each domain:
  == domain 1  score: 67.2 bits;  conditional E-value: 6.8e-22
  Methyltransf_23  22 aggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae....kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllkp 111
                      ++  +++iGc++Gi+l+ ++e g+   g+++s+   ++a+      ++ +++++ +++ +  +g  ++I++ ++l+h+p++ ++l  + +ll+p
       KIR62136.1 105 PDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAQekgvRVRTDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAP 198
                      555689***************************9999999777777777777777778888999****************************** PP

  Methyltransf_23 112 gGylllseplaslkedrllldwlylvpagrhisffsarslkelleeaGlevve 164
                      +G++++++p    +    + +  ++ + ++h+ +fsa+s+  ++++ G+e+v 
       KIR62136.1 199 DGVFVFEDP----YLGDIVAKTSFDQIYDEHFFLFSATSVQGMAQRCGFELVD 247
                      *********....6666677778888999*********************995 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   2.6e-13   5.9e-10       1      99 []     110     202 ..     110     202 .. 0.86

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 2.6e-13
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      +eiGc++G +lr + e+  +++ +g ++s+ + ++a+ek  + + +++++ + ++    +   g    +++a+n+l+h++ +++vl+ + +lL+
       KIR62136.1 110 VEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAQEKGVRVRTDFFEKATADDVRRTE---G-PANVIYAANTLCHIPYVQSVLEGVDALLA 197
                      69***************..**************888888777777665555555555443...3.9**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      p+G++
       KIR62136.1 198 PDGVF 202
                      ***86 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.3e-10   2.9e-07       2      96 .]     111     204 ..     110     204 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.3e-10
                      EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGllv 95 
                      ++Gc  G++++ ++++g r +g+++s  + + a+ek+++ +    f +a+a ++   ++   ++++ ++l+h++ ++++l+ +  +L p+G++v
       KIR62136.1 111 EIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAQEKGVRVRT-DFFEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFV 203
                      89************************************9995.3468999999****************************************9 PP

                      E CS
  Methyltransf_11  96 i 96 
                      +
       KIR62136.1 204 F 204
                      7 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.6e-09   3.7e-06       1      97 []     109     200 ..     109     200 .. 0.91
   2 ?   -1.9   0.0       2.5   5.7e+03      47      71 ..     240     264 ..     229     281 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.6e-09
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEE.EESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvef.vqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      ++++Gc  G +++ +++++   + +g+++s++  ++a+e+    +++ +f +++ a+d+   +g  ++++++++l+h++   ++ +l+ +  +L
       KIR62136.1 109 IVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAQEKGV--RVRTDFfEKATADDVRRTEGPANVIYAANTLCHIP--YVQSVLEGVDALL 196
                      79****************5..******************994..46777647789999*************99999987..788********** PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       p+G
       KIR62136.1 197 APDG 200
                      **99 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.5
                      TEEEEESBCCGBSSSTTTEEEEEEE CS
  Methyltransf_25  47 nvefvqgdaedlpfedgsfDlvvss 71 
                      ++ f+  d+++lp + g++ + +++
       KIR62136.1 240 RCGFELVDVQRLPVHGGEVRYTLAR 264
                      7788889999999988888777664 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.1e-06    0.0024      72     123 ..     162     222 ..     108     265 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.1e-06
  Methyltransf_31  72 d.....ekfDlilsnevlnaladpdkileeiervlkpggilliedpr....llaelpakve 123
                      d      + ++i + ++l++++  +++le++  +l p+g+++ edp     +++   ++++
       KIR62136.1 162 DvrrteGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYlgdiVAKTSFDQIY 222
                      122244889*************************************944433332224444 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.4e-05     0.031      11      62 ..     103     153 ..      95     191 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
        MetW  11 ikpgsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqg 62 
                   p   ++++Gc dG +l+ ++e  +v+  G e ++   a++ +kG+ v  +
  KIR62136.1 103 TGPDPFIVEIGCNDGIMLRTIQE-AGVRHLGFEPSSGVAAKAQEKGVRVRTD 153
                 556667899************87.9***********9999********9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3276.32
//
Query:       KIR62137.1  [L=259]
Description: hypothetical protein TK50_25785 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-17   62.6   0.1    8.4e-17   61.7   0.1    1.5  1  Methyltransf_25  Methyltransferase domain
    1.1e-16   61.2   0.1    2.7e-16   60.0   0.1    1.6  2  Methyltransf_11  Methyltransferase domain
      2e-16   60.2   0.0    2.7e-16   59.7   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    1.1e-13   51.7   0.2    8.9e-13   48.8   0.0    2.1  2  Methyltransf_12  Methyltransferase domain
    1.4e-13   51.0   0.0    1.9e-13   50.6   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    5.1e-08   32.5   0.0    7.4e-08   32.0   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    6.3e-06   25.6   0.0    8.7e-06   25.1   0.0    1.1  1  Methyltransf_20  Putative methyltransferase
    0.00016   21.2   0.0    0.00022   20.7   0.0    1.2  1  TehB             Tellurite resistance protein TehB
    0.00036   20.1   0.0      0.094   12.2   0.0    2.2  2  CheR             CheR methyltransferase, SAM binding domain
    0.00064   19.3   0.0    0.00084   18.9   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
     0.0019   19.2   0.0     0.0034   18.4   0.0    1.4  1  Methyltransf_24  Methyltransferase domain
     0.0042   16.6   0.0       0.01   15.4   0.0    1.6  1  MTS              Methyltransferase small domain
     0.0074   16.3   0.1      0.045   13.7   0.1    2.0  2  ADH_zinc_N       Zinc-binding dehydrogenase
     0.0099   15.5   0.0      0.014   15.0   0.0    1.2  1  NodS             Nodulation protein S (NodS)
  ------ inclusion threshold ------
      0.015   14.7   0.0      0.022   14.2   0.0    1.2  1  SAM_MT           Putative SAM-dependent methyltransferase
      0.032   13.8   0.1      0.067   12.8   0.1    1.5  1  MetW             Methionine biosynthesis protein MetW
       0.15   11.1   0.0       0.26   10.3   0.0    1.3  1  DREV             DREV methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.1     8e-20   8.4e-17       1      97 []      44     140 ..      44     140 .. 0.95

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 8e-20
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBS..SSTTTEEEEEEESTGGGSSHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlp..fedgsfDlvvssgalhhlsdedlekalkeia 90 
                      vLd++ G+Gr++  +a+r+  ++vt +D ++  l+ a++ a++eg+  ++e+++gda+d+p  f+ ++fDl ++ + l+++ d+    +++ + 
       KIR62137.1  44 VLDVAGGNGRDAVPIAARG--HHVTVLDSAPVSLAMAQRLAADEGVaeRIEIREGDAHDVPelFAGQEFDLLLCHNLLQYVADPA--VVIRGLV 133
                      9*****************5..****************************************888**********877***99665..78***** PP

                      HHEEEEE CS
  Methyltransf_25  91 rvLkpgG 97 
                      +vLkpgG
       KIR62137.1 134 KVLKPGG 140
                      ******9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.1   2.6e-19   2.7e-16       1      95 [.      45     143 ..      45     144 .. 0.98
   2 ?   -2.3   0.0       6.7   7.1e+03      25      40 ..     162     176 ..     146     215 .. 0.53

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 2.6e-19
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTS..S-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl..kvefvvadaeklp..fednsfDlvvssevlhhvedpekalkeiaRvLkp 90 
                      Ldv+ G+Gr a ++a rg++v+ +D ++  l++a++ a +eg+  ++e++++da+++p  f+ + fDl ++++ l++v+dp+ +++ +++vLkp
       KIR62137.1  45 LDVAGGNGRDAVPIAARGHHVTVLDSAPVSLAMAQRLAADEGVaeRIEIREGDAHDVPelFAGQEFDLLLCHNLLQYVADPAVVIRGLVKVLKP 138
                      8********************************************************999********************************** PP

                      EEEEE CS
  Methyltransf_11  91 gGllv 95 
                      gG l 
       KIR62137.1 139 GGSLS 143
                      **986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 6.7
                      ES-HHHHHHHHHHCCH CS
  Methyltransf_11  25 Dlskemlklakekase 40 
                      Dl+++++++  +++++
       KIR62137.1 162 DLDAALRAV-TARTKQ 176
                      443333322.222222 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   2.6e-19   2.7e-16       4     121 ..      41     156 ..      39     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 2.6e-19
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkilee 96 
                       lrvlD++ G+G+++  +a +   + +v+ +D  + ++  A+  a++ g+  ++e ++gd+++ ++l++ + fDl+l++++l+++adp+ ++++
       KIR62137.1  41 PLRVLDVAGGNGRDAVPIAAR---GHHVTVLDSAPVSLAMAQRLAADEGVAeRIEIREGDAHDVPELFAGQEFDLLLCHNLLQYVADPAVVIRG 131
                      689****************44...678***********************99*************99888************************ PP

  Methyltransf_31  97 iervlkpggilliedprllaelp.ak 121
                      + +vlkpgg l +  p+ ++ +p + 
       KIR62137.1 132 LVKVLKPGGSLSVVGPN-AYAVPlEA 156
                      *************9999.44444433 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   8.4e-16   8.9e-13       1      99 []      45     142 ..      45     142 .. 0.95
   2 ?    0.5   0.0      0.96     1e+03      32      77 ..     169     217 ..     161     233 .. 0.77

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 8.4e-16
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhlkdirevldnirk 91 
                      L++ +G+G+ + +++++  + ++t++D  p ++ + +++la+ e+  ++++e+++ d++d ++    + fDl +++n+l++++d++ v++ + k
       KIR62137.1  45 LDVAGGNGRDAVPIAAR--GHHVTVLDSAPVSL-AMAQRLAADEG-VAERIEIREGDAHDVPELfagQEFDLLLCHNLLQYVADPAVVIRGLVK 134
                      89***************..**************.99999999996.889999999999988887999*************************** PP

  Methyltransf_12  92 lLkpgGrl 99 
                      +LkpgG l
       KIR62137.1 135 VLKPGGSL 142
                      ******76 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.96
  Methyltransf_12  32 aiedakeklakrennnnnnvelealdlldldgg....ssfDlvvasnvlh 77 
                      a+  a++k     ++++++++ +++ ++ +d+g    +++ ++ ++nv+ 
       KIR62137.1 169 AV-TARTKQVPVYGRDVAVLTADQIGADLRDSGleivGHYGVINICNVIA 217
                      44.67777777777888888888888888888899999999999999985 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   1.8e-16   1.9e-13       9     163 ..      29     204 ..      13     206 .. 0.78

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 1.8e-16
  Methyltransf_23   9 lsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqg..........kfdlIvlrevl 92 
                      + ++++r l   +++ rvLd++ G G+ +  ++++g++vt+ D  p+  ++a+ +  a    + ++e++e ++           fdl  + ++l
       KIR62137.1  29 VEANVARHL--GDRPLRVLDVAGGNGRDAVPIAARGHHVTVLDSAPVSLAMAQ-RLAADEGVAERIEIREGDAhdvpelfagqEFDLLLCHNLL 119
                      445566666..58899******************************9999985.44444444445555554445555555556*********** PP

  Methyltransf_23  93 ehvpdppellrqiatllkpgGylllseplasl.............kedrllldwlylvpag.rhisffsarslkelleeaGlevv 163
                        v dp+ ++r + + lkpgG l +  p+a++             +++r++   + +vp   r + + +a++++ +l+++Gle+v
       KIR62137.1 120 QYVADPAVVIRGLVKVLKPGGSLSVVGPNAYAvpleaavrefdldAALRAVTARTKQVPVYgRDVAVLTADQIGADLRDSGLEIV 204
                      ******************************99999988877755533333333333333324899******************98 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0     7e-11   7.4e-08      46     152 ..      39     145 ..      24     161 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 7e-11
                      --TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT-T..TS-T-EEEEEEES-GGG-S-HHHHH CS
  Ubie_methyltran  46 krgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLp..feddsfDvvtvsfGlrnvtDklkaL 136
                       r+ +vlDvagG g  a+ ++    +  +v+vlD  +  L ++++ + +eg+  +ie   ++a ++p  f  + fD++     l+ v+D   ++
       KIR62137.1  39 DRPLRVLDVAGGNGRDAVPIAA---RGHHVTVLDSAPVSLAMAQRLAADEGVAeRIEIREGDAHDVPelFAGQEFDLLLCHNLLQYVADPAVVI 129
                      57889*********99998864...345899********************9989***********9555679********************* PP

                      HHHHHHEEEEEEEEEE CS
  Ubie_methyltran 137 keayrvlkpGGrlvvl 152
                      + + +vlkpGG l v+
       KIR62137.1 130 RGLVKVLKPGGSLSVV 145
                      *************987 PP

>> Methyltransf_20  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   8.3e-09   8.7e-06     129     243 ..      36     142 ..      23     151 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 8.3e-09
  Methyltransf_20 129 kaegrpvrildiaaGhGryvldalekaeervesillrdyselnveqGraliaekglediarfekgdafdeeslaalePrptlaivsGlyelfpd 222
                      +  +rp+r+ld+a G Gr   da+  a+ r +++++ d +++ ++  ++l+a++g+++ +++++gda d  +l a + + +l +   l +  +d
       KIR62137.1  36 HLGDRPLRVLDVAGGNGR---DAVPIAA-RGHHVTVLDSAPVSLAMAQRLAADEGVAERIEIREGDAHDVPELFAGQ-EFDLLLCHNLLQYVAD 124
                      45689*************...5665444.47789999************************************9865.6789999999999999 PP

  Methyltransf_20 223 ndlvkrslaGlaeavepggll 243
                       ++v   ++Gl ++++pgg l
       KIR62137.1 125 PAVV---IRGLVKVLKPGGSL 142
                      9988...67899999999987 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.1e-07   0.00022      30     128 ..      40     140 ..      23     157 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.1e-07
                 -S-EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-T.TEE...EEE--GGG----S-EEEEEEESSGGGS-GGGHHHHHHHHHHTE CS
        TehB  30 kpgkvldlgcgqgrnslylsllgydvtawdknensiafleeikekenlk.nis...talydineaklderydfilstvvlmfleaeripsiienmqect 124
                 +p +vld+  g+gr+++ +++ g++vt +d    s+a+ ++++  e +   i+       d+ e+   +++d++l   +l ++   ++  +i+ + +  
  KIR62137.1  40 RPLRVLDVAGGNGRDAVPIAARGHHVTVLDSAPVSLAMAQRLAADEGVAeRIEireGDAHDVPELFAGQEFDLLLCHNLLQYVADPAV--VIRGLVKVL 136
                 6999*************************************99888764135411145788899999999999999999888876654..566666666 PP

                 EEEE CS
        TehB 125 kvgg 128
                 k+gg
  KIR62137.1 137 KPGG 140
                 6666 PP

>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0099        10       7      50 ..      16      59 ..      12      66 .. 0.91
   2 !   12.2   0.0   8.9e-05     0.094     114     173 ..      85     144 ..      73     150 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0099
                TTCHHHHHHHHCCH.HHHHHHHTSSSEEEEEES-TTTHHHHHHH CS
        CheR  7 reakhfeelekevlepllakaknekrvriwsagcssGeEpYslA 50
                ++++++  l+ +v+e ++a+    +++r++ ++ ++G  +  +A
  KIR62137.1 16 WQKTPWGRLRYSVVEANVARHLGDRPLRVLDVAGGNGRDAVPIA 59
                88999999**********999999*************9988777 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 8.9e-05
                 HHHHTTEEEEE--TTT..-SGGG--EEEEEE-SSGGGC-CHHHHHHHHHHHCCEEEEEEEEE CS
        CheR 114 keikelvkFeklnlle..kksvlgklDvifcrnvliYfdeetqekvlerfaeklkpgglLll 173
                 + + e+++ ++ ++ +  +  + +++D+++c n+l Y   ++   v++ + + lkpgg L +
  KIR62137.1  85 EGVAERIEIREGDAHDvpELFAGQEFDLLLCHNLLQYVADPA--VVIRGLVKVLKPGGSLSV 144
                 5566777777777777544667799************99875..79************9954 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     8e-07   0.00084       4     120 ..      44     180 ..      42     223 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 8e-07
  Methyltransf_15   4 ilDlfsGaGGnviqfalvfekviaieinleklacaqhNaevYgvsdkitlvlgdvfe.................llaklkleki.kvdlvflSp 79 
                      +lD+ +G G +++ +a  +++v  +++ +  la+aq+ a   gv+++i +  gd  +                 ll+ +   ++  + lv +  
       KIR62137.1  44 VLDVAGGNGRDAVPIAARGHHVTVLDSAPVSLAMAQRLAADEGVAERIEIREGDAHDvpelfagqefdlllchnLLQYVADPAVvIRGLVKVLK 137
                      8******************************************************998888888888888777755555554444667777777 PP

  Methyltransf_15  80 PwGGpsYkkqekfd..lkkklkplkleqllkeslklskniilf 120
                      P G  s    +++   l+  ++++ l+  l++++  +k++ ++
       KIR62137.1 138 PGGSLSVVGPNAYAvpLEAAVREFDLDAALRAVTARTKQVPVY 180
                      7777777777777522456777777777777777777776655 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.3e-06    0.0034      24     101 ..      63     142 ..      31     144 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.3e-06
  Methyltransf_24  24 grlvavdhdpg.aeeaaalareaglddrvrlikadseealaslaagsiDllfiDgghaa.eavledleallprlapggvv 101
                       +++++d  p   + a++la+++g+++r++++++d++++ + +a +++Dll++    ++ ++ +  ++ l ++l+pgg +
       KIR62137.1  63 HHVTVLDSAPVsLAMAQRLAADEGVAERIEIREGDAHDVPELFAGQEFDLLLCHNLLQYvADPAVVIRGLVKVLKPGGSL 142
                      5788889988654557788888*****************999999********999888556666678888999998865 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   9.8e-06      0.01      34     141 ..      43     148 ..      31     167 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.8e-06
                 EEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTST...TS-EEEEEE---STTTCHCHHHHHHHHHHHHHH CS
         MTS  34 kvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeve...ekkfdlivsNPPfhagkatelavaeeliaeAke 127
                 +vlD++ G+G  ++ +a++  +  vt++d    +l++a++ +++++++  +e+++ d+ +  e    ++fdl+++    h+  +   +    +i+   +
  KIR62137.1  43 RVLDVAGGNGRDAVPIAARGHH--VTVLDSAPVSLAMAQRLAADEGVAerIEIREGDAHDVPElfaGQEFDLLLC----HNLLQYVADP-AVVIRGLVK 134
                 6*****************9888..9*********************99899998877665443333899999998....5555533333.346777788 PP

                 HEEEEEEEEEEEET CS
         MTS 128 aLkegGeLliVanr 141
                 +Lk+gG+L +V  +
  KIR62137.1 135 VLKPGGSLSVVGPN 148
                 89999999988755 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   4.2e-05     0.045      12      90 ..      60     147 ..      55     177 .. 0.84
   2 ?    0.4   0.0      0.55   5.8e+02      46      95 ..     163     220 ..     150     235 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.2e-05
                 HTT-EEEEEESSHHHHHHHHHTTESEEEET....TTCHHHHHHHHHTTTSSEEE.....EEESSCSHHHHHH.HHHCEEEEEEEEECSC CS
  ADH_zinc_N  12 alGaeviavdsseeklelakklGadeviny....keadlverikeltggegvdv.....vfecvGsgatlea.alkllkpgGrlvvvGg 90 
                 a G +v++ ds +  l++a++l ade + +    +e     ++ el+ g+ +d+      + +v+++a++ +  +k+lkpgG l vvG 
  KIR62137.1  60 ARGHHVTVLDSAPVSLAMAQRLAADEGVAErieiRE-GDAHDVPELFAGQEFDLllchnLLQYVADPAVVIRgLVKVLKPGGSLSVVGP 147
                 7899******************99999999886544.56788889999999*99888888999999987655178************94 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.55
                 HHHHHHHHT........TTSSEEE.EEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEE CS
  ADH_zinc_N  46 lverikelt........ggegvdv.vfecvGsgatleaalkllkpgGrlvvvGggkgee 95 
                 l++++++ t         g++v v   + +G  +  ++ l+++ + G + ++ +  +++
  KIR62137.1 163 LDAALRAVTartkqvpvYGRDVAVlTADQIG-ADLRDSGLEIVGHYGVINICNVIADND 220
                 5555555554444444423333333557777.777778888888888888887744443 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.3e-05     0.014      47     142 ..      44     142 ..       8     153 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
        NodS  47 alevGcaaGalterlapyckrltvvdvveeaiararervke.....sshis.wivsdvqqfstdekfdlivvaevlyyiedvaelraavrnlvsllapd 139
                 +l+v    G  ++ +a   +++tv+d  + ++a a++   +       +i      dv ++ + ++fdl+++ ++l y+ d a     +r lv++l+p+
  KIR62137.1  44 VLDVAGGNGRDAVPIAARGHHVTVLDSAPVSLAMAQRLAADegvaeRIEIReGDAHDVPELFAGQEFDLLLCHNLLQYVADPAV---VIRGLVKVLKPG 139
                 6777777777788888888999999998888888776544311100334431245799999******************99875...58999******9 PP

        NodS 140 gql 142
                 g l
  KIR62137.1 140 GSL 142
                 987 PP

>> SAM_MT  Putative SAM-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.1e-05     0.022      71     109 ..      40      78 ..      15     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.1e-05
      SAM_MT  71 vlptvlDaTaGlGrDafvlaslGckvtliErhpvvaaLL 109
                    +vlD   G GrDa  +a+ G +vt+++  pv  a+ 
  KIR62137.1  40 RPLRVLDVAGGNGRDAVPIAARGHHVTVLDSAPVSLAMA 78 
                 4468*****************************988764 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   6.3e-05     0.067      47     101 ..      81     135 ..      30     148 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.3e-05
        MetW  47 egvaecvakGlsviqgdldkdlenfedksfdyvvlsqtlqatrnpkevldellri 101
                  +  e va  +++ +gd+ +  e f+ ++fd+ +    lq + +p+ v++ l+++
  KIR62137.1  81 LAADEGVAERIEIREGDAHDVPELFAGQEFDLLLCHNLLQYVADPAVVIRGLVKV 135
                 3456789999***************************************999887 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00025      0.26      93     184 ..      39     142 ..      25     160 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00025
        DREV  93 qedkklldlGaGdGeitkrvaptfee...vyatelsetmrdrlkkkkynvlsalelqe..........tdvkldlilclnlldrcfdplklledirsal 178
                  ++ ++ld+  G+G  +  +a   ++   + ++ +s  m +rl   +  v   +e++e          ++ ++dl+lc nll    dp  +++ + ++l
  KIR62137.1  39 DRPLRVLDVAGGNGRDAVPIAARGHHvtvLDSAPVSLAMAQRLAADE-GVAERIEIREgdahdvpelfAGQEFDLLLCHNLLQYVADPAVVIRGLVKVL 136
                 56778888888888766666665555221335567888888887654.344444444311111111223568*************************** PP

        DREV 179 epngrv 184
                 +p g  
  KIR62137.1 137 KPGGSL 142
                 *98764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 1783.70
//
Query:       KIR62138.1  [L=168]
Description: hypothetical protein TK50_25820 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-37  128.4   0.0    2.7e-37  128.2   0.0    1.0  1  Flavin_Reduct  Flavin reductase like domain


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.2   0.0   1.5e-41   2.7e-37       2     153 ..      19     164 ..      18     166 .. 0.96

  Alignments for each domain:
  == domain 1  score: 128.2 bits;  conditional E-value: 1.5e-41
                    TTS-EE-EEEEE.EETTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBCCGHHHHHHTCS...SCCCCCCCCCCCEEECTC CS
  Flavin_Reduct   2 rrvaqpvavvttsvpptsplgatlssftslsldPplvafslrlpsstadalkeagefvinllsesqealadafsqksgprtddksifagltweesp 97 
                    +++a++va vt  v+ + p g+ ++sfts+sldPplvaf++++ s++++ l++ ++ +i +l+++q++   ++++    r++dk  f ++ w++sp
     KIR62138.1  19 GHFATGVAAVTG-VDAGAPVGLLVNSFTSVSLDPPLVAFCVAHTSRSWSRLRRGERHCICFLAADQQEQGLRLAG----RGVDK--FRDVAWSPSP 107
                    689********9.**************************************************************....99***..********** PP

                    CCSEEETTCSEEEEEEEEEEECCTTEEEEEEEEEEE.EESTTECTTBEECCCCCEEE CS
  Flavin_Reduct  98 tgapallgalasleCqvvgsvelgdhelfigeVvav.kvgddadeepLlywrrryag 153
                     g+p+l+gala+leC v  ++++gdh +++++V +  + gdd  +epLl++r+r+ +
     KIR62138.1 108 SGLPVLDGALAWLECAVEAEHPAGDHVIVVARVHRLaRSGDDSRTEPLLFYRGRWTR 164
                    ***********************************97788888889*******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1358.36
//
Query:       KIR62139.1  [L=164]
Description: hypothetical protein TK50_25825 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-12   45.8   0.0    4.5e-12   45.5   0.0    1.1  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
    3.3e-09   36.9   0.0    3.8e-09   36.8   0.0    1.1  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
     0.0038   16.5   0.0     0.0047   16.2   0.0    1.1  1  Glyco_trans_1_3  Glycosyl transferase family 1


Domain annotation for each model (and alignments):
>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   7.6e-16   4.5e-12     280     405 ..       3     127 ..       1     134 [. 0.84

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 7.6e-16
       UDPGT 280 fSlGsmvseipeekanaiAsaLakipqkvlWrfdgkkPstLakntllvkWlPqndlLgH.PktkAFvtHaGangvyEaisnGvPmvglPlFgdqrdNik 377
                 + lG++v ++ e  +  + + La+ip   +    ++  +  a++   v+  P  dl +   +  A + H+G  +++ a+++G+P+ +lP+ +dq+ N++
  KIR62139.1   3 VTLGTLV-NRKEL-LTRVLAELARIPVDCVLAAGDRAAEIAAHAPAHVQVQPFADLGRLaASCTALICHGGFGSILHAVVHGLPVTVLPYNADQEWNAE 99 
                 6678777.44555.44444458999988888877777777778888899999999877525789*********************************** PP

       UDPGT 378 rmeakgaavtlnvkemtsedllnAlkev 405
                 rm+a ga+ ++ + e+    l+ A++e+
  KIR62139.1 100 RMRAIGAGRRVGWDELGDGALAAAVEEM 127
                 *************************986 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   6.3e-13   3.8e-09      56     150 ..      47     136 ..      13     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 6.3e-13
                      EEEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS---S- CS
  Glyco_tran_28_C  56 kvevfefidkmaeaikaadLvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaeklrla 149
                       v+v++f+d +  + ++    I+++G g+i+ ++++g+p  + p+      +q+ Na+ +   ga++ + ++el    L++a++e+ +++   a
       KIR62139.1  47 HVQVQPFAD-LGRLAASCTALICHGGFGSILHAVVHGLPVTVLPYNA----DQEWNAERMRAIGAGRRVGWDELGDGALAAAVEEMHSPPPLRA 135
                      688999999.999999999****************************....***********************************99987655 PP

                      - CS
  Glyco_tran_28_C 150 e 150
                      +
       KIR62139.1 136 A 136
                      4 PP

>> Glyco_trans_1_3  Glycosyl transferase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   7.9e-07    0.0047     211     313 ..      20     120 ..       7     127 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.9e-07
  Glyco_trans_1_3 211 evLkklgvefvvYglrrd..teeekegnltykafseegFleDLataraviagagftLmtealyLkkPlLavPvarqFeqvlnalyLerlgyGaa 302
                      + L++++v++v+    r    +++  + ++ ++f++ g l+  a++ a+i+ +gf  +  a+  + P+ ++P +   +q  na  + ++g G+ 
       KIR62139.1  20 AELARIPVDCVLAAGDRAaeIAAHAPAHVQVQPFADLGRLA--ASCTALICHGGFGSILHAVVHGLPVTVLPYNA--DQEWNAERMRAIGAGRR 109
                      45788999999988877633455666789999999999886..89***************************986..7889***********99 PP

  Glyco_trans_1_3 303 vdakdldkedv 313
                      v  ++l   ++
       KIR62139.1 110 VGWDELGDGAL 120
                      98888866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1123.63
//
Query:       KIR62140.1  [L=69]
Description: hypothetical protein TK50_25830 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 551.95
//
Query:       KIR62141.1  [L=205]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-05   23.1   0.0    0.00011   22.3   0.0    1.4  1  B12-binding  B12 binding domain


Domain annotation for each model (and alignments):
>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   5.9e-09   0.00011       3      89 ..      91     175 ..      89     178 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 5.9e-09
  B12-binding   3 vllatvggdlhplGlavlaaalrdagfeVqllganvenedivaairaekpdvvglSalltsqleavkelvellkrirprvkvvvGGa 89 
                  vlla ++ ++h lGl +laaalr++g    llg   +  ++++a+r+ +p+ v++ +  t     + +lv++ +   p+v+v + G+
   KIR62141.1  91 VLLAGAEHETHCLGLHALAAALRERGRGALLLGPALPWTALASAVRRARPHTVVVWS-QTPVTGRAYRLVRFGRDT-PGVRVHAAGP 175
                  67889999********************************************99977.899999999999997665.8888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1543.86
//
Query:       KIR62142.1  [L=219]
Description: hypothetical protein TK50_25995 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1510.60
//
Query:       KIR62143.1  [L=117]
Description: hypothetical protein TK50_26025 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 865.68
//
Query:       KIR62144.1  [L=60]
Description: hypothetical protein TK50_26045 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 468.19
//
Query:       KIR62145.1  [L=175]
Description: shikimate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-39  134.2   0.0    4.7e-39  134.1   0.0    1.0  1  SKI              Shikimate kinase
    1.2e-05   25.5   0.0    1.7e-05   25.0   0.0    1.4  1  AAA_33           AAA domain
    8.8e-05   23.1   0.0    0.00012   22.6   0.0    1.3  1  AAA_18           AAA domain
    0.00019   21.9   0.0     0.0003   21.2   0.0    1.3  1  AAA              ATPase family associated with various cellul
    0.00047   20.3   0.0    0.00057   20.1   0.0    1.5  1  Cytidylate_kin2  Cytidylate kinase-like family
     0.0018   18.3   0.0     0.0034   17.4   0.0    1.4  1  AAA_5            AAA domain (dynein-related subfamily)
      0.002   18.4   0.0     0.0036   17.6   0.0    1.8  1  AAA_22           AAA domain
     0.0026   18.0   0.3     0.0072   16.6   0.0    1.9  2  AAA_28           AAA domain
     0.0029   17.4   0.0     0.0052   16.5   0.0    1.3  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.004   16.9   0.0     0.0048   16.7   0.0    1.2  1  AAA_24           AAA domain
     0.0067   16.8   0.5      0.011   16.2   0.5    1.5  1  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.017   14.5   0.0    1.3  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.013   15.0   0.0      0.018   14.5   0.0    1.3  1  KTI12            Chromatin associated protein KTI12
      0.015   15.7   0.6      0.018   15.4   0.6    1.5  1  AAA_19           AAA domain
      0.018   14.4   0.0       0.03   13.6   0.0    1.3  1  Zeta_toxin       Zeta toxin
      0.029   14.0   0.0      0.045   13.3   0.0    1.4  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.029   14.1   1.2      0.057   13.1   0.1    1.9  2  AAA_30           AAA domain
      0.081   12.6   0.2       0.14   11.8   0.1    1.6  2  CoaE             Dephospho-CoA kinase
      0.082   12.7   0.0       0.11   12.3   0.0    1.2  1  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      0.087   13.2   0.0        0.2   12.1   0.0    1.6  2  AAA_17           AAA domain
      0.097   13.2   0.1       0.12   12.9   0.1    1.4  1  ABC_tran         ABC transporter
       0.12   11.9   0.0       0.22   11.1   0.0    1.4  1  SRP54            SRP54-type protein, GTPase domain
       0.13   12.2   0.0       0.29   11.0   0.0    1.6  2  AAA_3            ATPase family associated with various cellul
        0.2   12.1   0.0       0.26   11.8   0.0    1.1  1  AAA_23           AAA domain


Domain annotation for each model (and alignments):
>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.1   0.0   6.2e-42   4.7e-39       1     156 [.      19     172 ..      19     174 .. 0.96

  Alignments for each domain:
  == domain 1  score: 134.1 bits;  conditional E-value: 6.2e-42
                 TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSSEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHH CS
         SKI   1 mGaGKstvGkllAkklglefiDlDeliekrtgksiaeifeeegeegFrelEsevlkelleeeglViatGGGavlseenrellkekgiviyLdvsleell 99 
                 +G+GK+tvG+ lA  lg+ef D+D  ie  +gk i+eif +ege+ Fr+lE+++ ++ l++   V+a+GGGavl eenr++l  +++v++L v+l + +
  KIR62145.1  19 PGSGKTTVGETLAALLGVEFRDTDADIEAMAGKPIPEIFVDEGEDHFRALERAATAAALTSCAGVLALGGGAVLAEENRAALV-GHTVVHLSVELADAV 116
                 69*********************************************************************************.*************** PP

                 HHHHHTTSSGGGCSCHHHHHHHHHHH.HHHHHHCCSSCEEEECTSSHHHHHHHHHHHH CS
         SKI 100 erlkadkeRPllqekskeeelleela.ereplyeeaadvvvdeseeskeevaeeilea 156
                 +r+     RPll  + +  + l++l+ +r+ply+e+a+ +v ++ +++ee+a+e+ + 
  KIR62145.1 117 KRVGLGAGRPLLAINPR--ATLKHLMdQRRPLYAEVATATVVTDGRTPEEIAAEVAAL 172
                 *************9999..77777777**************************99765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   2.2e-08   1.7e-05       1      40 [.      12      60 ..      12     119 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2.2e-08
      AAA_33  1 lvllvGlpGsGKstlaerllkklgavllssdtlrrrlfg.........t 40
                +v+lvG pGsGK+t+ e l++ lg+++ ++d+ +++++g         +
  KIR62145.1 12 VVVLVGSPGSGKTTVGETLAALLGVEFRDTDADIEAMAGkpipeifvdE 60
                89******************************99999985555543322 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.6e-07   0.00012       1      39 [.      13      56 ..      13     130 .. 0.60

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.6e-07
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf.....gvnlrdvakenglll 39
                ++l G pG+GKtt+++ L+ +lg+        +  +a +  +++
  KIR62145.1 13 VVLVGSPGSGKTTVGETLAALLGVefrdtDADIEAMAGKPIPEI 56
                789******************94444444444444444444444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     4e-07    0.0003       1      57 [.      13      76 ..      13      86 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4e-07
                EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS........STTHHHHHHHHHHHHHHHTS CS
         AAA  1 vllyGppGtGKTllakavakelgvefleisgsellsk........yvgesekkirelfkeakeka 57
                v+l+G pG GKT++ + +a  lgvef  +++     +        +v e+e+++r+l ++a + a
  KIR62145.1 13 VVLVGSPGSGKTTVGETLAALLGVEFRDTDADIEA-MagkpipeiFVDEGEDHFRALERAATAAA 76
                689*******************9998776654322.22347777799999999999887776665 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   7.6e-07   0.00057       4      60 ..      15      68 ..      12     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 7.6e-07
  Cytidylate_kin2  4 IsreyGsgGetigeaLAekLglpfydreiieevakelglseeeveevdersrlssfl 60
                     + ++ Gsg++t+ge LA  Lg++f d +   e++  + ++e  v e +++ r   +l
       KIR62145.1 15 LVGSPGSGKTTVGETLAALLGVEFRDTDADIEAMAGKPIPEIFVDEGEDHFR---AL 68
                     56789**********************9999999999999999999888433...33 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   4.6e-06    0.0034       2      26 ..      13      37 ..      12      46 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4.6e-06
                EEEE--SSSSHHHHHHHGGGGBS-- CS
       AAA_5  2 vlLvGppGtgKselaerlaaalnre 26
                v+LvG pG+gK+++ e laa+l+ e
  KIR62145.1 13 VVLVGSPGSGKTTVGETLAALLGVE 37
                89*******************9766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.9e-06    0.0036       4      32 ..       9      37 ..       7     156 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.9e-06
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldee 32
                t+ ++v++G +G+GKTt+ ++l+  l  e
  KIR62145.1  9 TRPVVVLVGSPGSGKTTVGETLAALLGVE 37
                67899*****************9988544 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   9.7e-06    0.0072       2      24 ..      13      36 ..      12      83 .. 0.74
   2 ?   -1.3   0.1         3   2.2e+03      16      46 ..     136     166 ..     134     173 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9.7e-06
      AAA_28  2 ivitGgestGKTtlleaLaar.gy 24
                +v++G +++GKTt+ e Laa  g+
  KIR62145.1 13 VVLVGSPGSGKTTVGETLAALlGV 36
                8******************76543 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3
      AAA_28  16 leaLaargypvvpEaareileeklakgedal 46 
                 l++L ++  p ++E+a+  +   +++ e+++
  KIR62145.1 136 LKHLMDQRRPLYAEVATATVVTDGRTPEEIA 166
                 6777777788888888777666666655544 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     7e-06    0.0052      36      67 ..      13      44 ..       7      53 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7e-06
      RuvB_N 36 vllyGpPGlGkttlakiiakelgvklkitsgP 67
                v+l+G+PG Gktt+ + +a+ lgv+++ t + 
  KIR62145.1 13 VVLVGSPGSGKTTVGETLAALLGVEFRDTDAD 44
                89*************************99875 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.4e-06    0.0048       4      47 ..      12      57 ..       9      96 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.4e-06
      AAA_24  4 kiliyGpsgiGKTtlakelgpkplfi...dtekGlksldadkfpdie 47
                 ++++G++g+GKTt+  +l    l +   dt++   ++ ++ +p+i 
  KIR62145.1 12 VVVLVGSPGSGKTTVGETL-AALLGVefrDTDADIEAMAGKPIPEIF 57
                799****************.444444444999999999999999775 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.5   1.4e-05     0.011      23      49 ..       8      35 ..       3     131 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.4e-05
      AAA_16 23 rp.elvllsGesGvGKsslvrellrale 49
                r+ ++v+l+G +G+GK+++ ++l+  l 
  KIR62145.1  8 RTrPVVVLVGSPGSGKTTVGETLAALLG 35
                44589***************99996444 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.3e-05     0.017      25      54 ..      13      42 ..       9     108 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.3e-05
  Mg_chelatase 25 lllvGppGsGKtmlakrlpsllpplseeea 54
                  ++lvG+pGsGKt + + l++ll    ++  
    KIR62145.1 13 VVLVGSPGSGKTTVGETLAALLGVEFRDTD 42
                  789******************975443333 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.4e-05     0.018       2      25 ..      11      34 ..      10      61 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.4e-05
                .EEEEE--TTSSHHHHHHHHHHHH CS
       KTI12  2 pLvvltGlPssGKstrakeLakal 25
                p vvl G P sGK+t+ ++La  l
  KIR62145.1 11 PVVVLVGSPGSGKTTVGETLAALL 34
                89******************9887 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.6   2.4e-05     0.018       9      37 ..       9      37 ..       6     152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.4e-05
      AAA_19  9 kekvllvtaGpGtGKTrvlkhivallvel 37
                +++v+++++ pG+GKT+v ++  all  +
  KIR62145.1  9 TRPVVVLVGSPGSGKTTVGETLAALLGVE 37
                57899************998888877655 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.1e-05      0.03      15      37 ..      10      31 ..       5      40 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.1e-05
  Zeta_toxin 15 rPklillgGqpGAGKselaellk 37
                rP+ ++l+G+pG+GK+++ e l+
  KIR62145.1 10 RPV-VVLVGSPGSGKTTVGETLA 31
                565.56779********987765 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     6e-05     0.045       1      20 [.      11      30 ..      11      53 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6e-05
                EEEEEEESTTCCHHHHHHHH CS
        cobW  1 pvtvltGflGsGKTtLlnhl 20
                pv+vl+G++GsGKTt+ ++l
  KIR62145.1 11 PVVVLVGSPGSGKTTVGETL 30
                799************86655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   7.7e-05     0.057      18      41 ..      10      33 ..       6      49 .. 0.86
   2 ?   -0.9   0.0       1.5   1.1e+03     146     166 ..     131     151 ..      89     170 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.7e-05
      AAA_30 18 drvavltGpAGtGKttalkalrea 41
                + v+vl+G +G+GKtt+ ++l+++
  KIR62145.1 10 RPVVVLVGSPGSGKTTVGETLAAL 33
                5699*************9998876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
      AAA_30 146 igtaeLtevvRqkeseeraaa 166
                  + a+L++++ q+++ ++++a
  KIR62145.1 131 NPRATLKHLMDQRRPLYAEVA 151
                 344555555555544333333 PP

>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00019      0.14       2      32 ..      12      43 ..      11      85 .. 0.87
   2 ?   -2.4   0.0       4.3   3.2e+03     113     138 ..      92     118 ..      69     120 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
                EEEEEESTTSSHHHHHHHHHH.TT-EEEEHHH CS
        CoaE  2 ivgltGgiasGKstvanlfad.lgvpivDaDl 32
                +v l G  +sGK+tv +++a+ lgv+  D+D+
  KIR62145.1 12 VVVLVGSPGSGKTTVGETLAAlLGVEFRDTDA 43
                68899****************99999977764 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.3
                 TTTTTGGGGS.SEEEEEE--HHHHHHH CS
        CoaE 113 LvEkqlekli.ervlvvdvelelqveR 138
                 L E++ ++l+ ++v+ ++vel   v+R
  KIR62145.1  92 LAEENRAALVgHTVVHLSVELADAVKR 118
                 555555555514455566666666766 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00014      0.11       1      26 [.      12      42 ..      12      71 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl.....d 26
                + vl+G  gsGK+++ ++l  l ++     d
  KIR62145.1 12 VVVLVGSPGSGKTTVGETLAALLGVefrdtD 42
                579******************9776544442 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00027       0.2       1      22 [.      16      37 ..      16      49 .. 0.90
   2 ?   -2.2   0.0       7.1   5.3e+03      22      39 ..     104     121 ..      87     160 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00027
                EE-TTSSHHHHHHHHHHHHTEE CS
      AAA_17  1 lGgPGsGKgtqceklvekygft 22
                +G PGsGK+t+ e+l+  +g++
  KIR62145.1 16 VGSPGSGKTTVGETLAALLGVE 37
                799************9988876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 7.1
                 EEEEHHHHHHHHHHTTTS CS
      AAA_17  22 thlsaGdllreeakrggl 39 
                 t++  +  l + +kr gl
  KIR62145.1 104 TVVHLSVELADAVKRVGL 121
                 334444444444444444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   0.00016      0.12      13      35 ..      12      34 ..       8     125 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00016
                EEEEEESTTSSHHHHHHHHTTSS CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagll 35
                +v++vG+ G+GK+t+ ++la ll
  KIR62145.1 12 VVVLVGSPGSGKTTVGETLAALL 34
                799***********988888765 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0003      0.22       3      25 ..      12      34 ..      10      42 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
                EEEEEESTTSSHHHHHHHHHHHH CS
       SRP54  3 villvGlqGaGKTttlaKLaall 25
                v++lvG  G+GKTt    Laall
  KIR62145.1 12 VVVLVGSPGSGKTTVGETLAALL 34
                799************99999876 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00039      0.29       2      30 ..      13      41 ..      12      71 .. 0.86
   2 ?   -2.6   0.0         6   4.5e+03      47      73 ..      92     118 ..      86     127 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00039
       AAA_3  2 vllegvPGlaktllvkalakaldlefkri 30
                v+l g PG +kt++ ++la  l++ef+  
  KIR62145.1 13 VVLVGSPGSGKTTVGETLAALLGVEFRDT 41
                68899********************9865 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6
       AAA_3  47 feekekefefkkGpvfanllladeinr 73 
                 + e+++   + +  v  ++ lad + r
  KIR62145.1  92 LAEENRAALVGHTVVHLSVELADAVKR 118
                 455555555555566666677777666 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00034      0.26      19      54 ..      10      45 ..       5      74 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00034
      AAA_23 19 kgltlItGpNGaGKTTildAiklaLygetprlsrks 54
                +++++++G  G+GKTT+ + +   L+ e+++++ + 
  KIR62145.1 10 RPVVVLVGSPGSGKTTVGETLAALLGVEFRDTDADI 45
                6899*****************999999888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 1155.35
//
Query:       KIR62146.1  [L=632]
Description: primosome assembly protein PriA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-16   59.4   0.0    4.8e-16   58.4   0.0    1.6  1  PriA_3primeBD   3′ DNA-binding domain (3′BD)
  ------ inclusion threshold ------
       0.14   11.7   0.2        9.8    5.8   0.0    2.4  2  TF_Zn_Ribbon    TFIIB zinc-binding
       0.17   12.6   2.8        0.5   11.2   0.0    3.0  3  PSK_trans_fac   Rv0623-like transcription factor
       0.65   10.0   5.4        4.6    7.2   0.2    2.5  2  Zn_ribbon_SprT  SprT-like zinc ribbon domain
          2    8.4  10.9        2.9    7.9   1.7    2.8  3  Anti-TRAP       Tryptophan RNA-binding attenuator protein inh
        4.1    7.6   8.1         14    5.8   0.9    2.3  2  DUF1272         Protein of unknown function (DUF1272)


Domain annotation for each model (and alignments):
>> PriA_3primeBD  3′ DNA-binding domain (3′BD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   1.6e-19   4.8e-16       7      96 .]       3      93 ..       1      93 [. 0.96

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 1.6e-19
  PriA_3primeBD  7 pldrtfdYrvpeelevki..GsrVlVpfgkrklvGiVvalkeeseveeeklkpieevldeepllteellelaewlaeyylaplgevlkaalP 96
                   +ldr+fdY+vp+el++++  G+rV+V f ++ + G+ ++ +++s  ++ +l  ++++++ ep+l +e+++la+ +a++y+ +l++vl++a+P
     KIR62146.1  3 HLDRPFDYLVPAELADAAvpGTRVKVRFAGQLVDGWLLERADDSG-HTGRLACLDRLVSPEPVLADEVVRLARAVADRYAGSLADVLRLAVP 93
                   699***********776668************************9.9*******************************************98 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.016        48       2      27 ..     373     397 ..     372     399 .. 0.90
   2 ?    5.8   0.0    0.0033       9.8       1      10 [.     402     411 ..     402     420 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.016
                   EETTTTCEECHEETSTTCEEESSSSB CS
  TF_Zn_Ribbon   2 kCPnCgstnlveDpergelvCtdCGl 27 
                   +CP C ++ l ++ +rg+  C  CG 
    KIR62146.1 373 RCPHCAGP-LALPSARGTPACRWCGR 397
                   6******8.89**********99996 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0033
                   EEETTTTCEE CS
  TF_Zn_Ribbon   1 ykCPnCgstn 10 
                   y CP+Cg+++
    KIR62146.1 402 YACPECGGRR 411
                   68*****986 PP

>> PSK_trans_fac  Rv0623-like transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00017       0.5       8      43 ..      67     102 ..      64     116 .. 0.89
   2 ?   -1.2   0.0       1.2   3.7e+03      13      32 ..     534     553 ..     530     554 .. 0.84
   3 ?   -1.6   0.5       1.6   4.8e+03       9      25 ..     598     615 ..     588     621 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  PSK_trans_fac   8 peverlareLarltgeskteAvrrAleerlerlrre 43 
                    +ev+rlar +a++   s+ ++ r A+  r +r+++e
     KIR62146.1  67 DEVVRLARAVADRYAGSLADVLRLAVPPRHARVEKE 102
                    69******************************9976 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
                    XXXXXXXXXXXXXXXXXXXX CS
  PSK_trans_fac  13 lareLarltgeskteAvrrA 32 
                     areLa+++      Avr A
     KIR62146.1 534 AARELAERRELGFPPAVRMA 553
                    59******998888888766 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.6
                    XXXXXXXXXXXXXXX.XX CS
  PSK_trans_fac   9 everlareLarltge.sk 25 
                    ++ +la+ L +++g+ ++
     KIR62146.1 598 RAAALAEALHAAAGArTL 615
                    556666666666665444 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   1.2     0.017        49      25      35 ..     372     382 ..     356     383 .. 0.79
   2 ?    7.2   0.2    0.0015       4.6       4      19 ..     401     413 ..     401     418 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.017
  Zn_ribbon_SprT  25 YrCrrCkgtLr 35 
                      rC++C+g L 
      KIR62146.1 372 ARCPHCAGPLA 382
                     48999999885 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0015
  Zn_ribbon_SprT   4 vYrCtgCgreythhls 19 
                     +Y C+ Cg   +++l+
      KIR62146.1 401 AYACPECG---GRRLR 413
                     59******...***98 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   2.1     0.011        32      23      47 ..     364     388 ..     361     391 .. 0.85
   2 ?    7.9   1.7   0.00098       2.9      14      47 ..     390     418 ..     389     421 .. 0.80
   3 ?   -3.6   0.0       3.8   1.1e+04      29      47 ..     499     517 ..     495     518 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.011
                 TTE......E-TTTTTSSEEE-HHH CS
   Anti-TRAP  23 epeeprasleCPkCsGkglipTaqG 47 
                   ++ r+   CP+C G   +p a G
  KIR62146.1 364 SCADCRTPARCPHCAGPLALPSARG 388
                 5568888999*******99999998 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00098
                 TTTTTTSEETTE......E-TTTTTSSEEE-HHH CS
   Anti-TRAP  14 daCngsGkiepeeprasleCPkCsGkglipTaqG 47 
                 +aC   G+i+++       CP+C+G+ l     G
  KIR62146.1 390 PACRWCGRIAAA-----YACPECGGRRLRAAVTG 418
                 679999999988.....99******998665555 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.8
                 ...E-TTTTTSSEEE-HHH CS
   Anti-TRAP  29 asleCPkCsGkglipTaqG 47 
                 a+l  P+  G  ++  a+G
  KIR62146.1 499 AALARPATAGGRVVVVADG 517
                 6778899999999999998 PP

>> DUF1272  Protein of unknown function (DUF1272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   1.1    0.0062        18      32      52 ..     365     382 ..     362     387 .. 0.76
   2 ?    5.8   0.9    0.0048        14      32      50 ..     392     410 ..     389     414 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0062
     DUF1272  32 CaeCaeevlenvCPncgGelv 52 
                 Ca+C   +   +CP c+G l+
  KIR62146.1 365 CADC---RTPARCPHCAGPLA 382
                 5555...5556*******885 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0048
     DUF1272  32 CaeCaeevlenvCPncgGe 50 
                 C+ C     +  CP+cgG 
  KIR62146.1 392 CRWCGRIAAAYACPECGGR 410
                 77777777778******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 3980.68
//
Query:       KIR62147.1  [L=295]
Description: hypothetical protein TK50_26195 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-52  178.2   0.3    1.9e-52  178.0   0.3    1.0  1  Septum_form  Septum formation


Domain annotation for each model (and alignments):
>> Septum_form  Septum formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.0   0.3   1.1e-56   1.9e-52       1     226 []      48     272 ..      48     272 .. 0.96

  Alignments for each domain:
  == domain 1  score: 178.0 bits;  conditional E-value: 1.1e-56
  Septum_form   1 aGdCltwdesa.dasdlekVdCaeehrfevvaredlsaypgsefgagapppseeraaelaeelCeqavaeylggkldpagrfsigvilPseaaWaaGd 97 
                  aG+C+t  ++    s +++VdCa++hr+e+ +   +++++gs+++ +app+  ++ +++ + +C+++v++ lg++++ agr+ ++ ++Ps++aW++G+
   KIR62147.1  48 AGTCHTVFADVgYLSGYNPVDCATSHRVETLH---VGTLTGSAAELSAPPAAGSAGMRAVRTECDREVNKALGADWR-AGRLFLSTVFPSRQAWSGGA 141
                  69*****99889********************...88888*************************************.******************** PP

  Septum_form  98 RtlrCglqvtgssg..klvertgkvaeqdqskvaeagtClaikedk.kaev.dpVdCaepHaaevvgvvdladkfpdaypseeeqdeklekaCaaaaa 191
                  R++rC++++++s +  ++v+rtg++a++++ ++a a++C++ k +k +++  +pV+C+++H++e+vgv++++d    +++++++++ +++k C++++a
   KIR62147.1 142 RWFRCDVSEVESVDdpSAVPRTGSLAGALKGTSALAHRCFNPKIKKdDVQEmTPVACTRKHRVEFVGVYQAPDI---SFAQVDKNRMRIHKGCRTLIA 236
                  **********99998999**********************9998777666669*******************99...9******************** PP

  Septum_form 192 eYlggp..dklrkstltvfwstlseesWkaGsrkvnC 226
                  +Y+++p   +l+++++t+f+++  e++Wk G+r+v+C
   KIR62147.1 237 SYAKVPnnGDLEYRAGTIFYHP-FEQEWKDGNRGVQC 272
                  *****98889************.8999********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2178.25
//
Query:       KIR62148.1  [L=220]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-16   58.8   0.0    6.1e-16   58.3   0.0    1.3  1  cNMP_binding    Cyclic nucleotide-binding domain
    7.7e-14   51.4   1.8    1.5e-13   50.5   1.8    1.5  1  HTH_Crp_2       Crp-like helix-turn-helix domain
    1.4e-05   24.9   1.0    4.9e-05   23.1   1.0    2.1  1  MarR_2          MarR family
     0.0071   15.9   0.0      0.017   14.7   0.0    1.7  1  HTH_24          Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.055   13.1   0.1       0.25   11.0   0.0    2.2  2  GntR            Bacterial regulatory proteins, gntR family
       0.06   13.2   0.0       0.15   11.9   0.0    1.6  1  TrmB            Sugar-specific transcriptional regulator TrmB
       0.14   12.4   0.0        0.3   11.3   0.0    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   2.4e-19   6.1e-16       1      89 []      18     106 ..      18     106 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 2.4e-19
                   EEEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH- CS
  cNMP_binding   1 rrsfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellqqd 89 
                   rr+++ag++++++G +  +l ++++G  +v+++ +dg+  +l     Gdl Ge+++l+++pr+atv++ ++++  +++rd f+++l+++
    KIR62148.1  18 RRQVPAGQILIHEGVRESHLVLLEEGLTKVTASVPDGRAALLSLRVGGDLMGEMSALNDKPRSATVTTCGPTVYSVISRDRFNQFLRTH 106
                   6899************99*********************99*999****************************************9986 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   1.8     6e-17   1.5e-13       2      68 .]     139     212 ..     138     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 6e-17
                 HHHHHHHHHHCTTT.....C.EEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEET.EEEEES-HHHHHHH CS
   HTH_Crp_2   2 RlArfLlrlaerag.....g.eielpltqeelAsmlGltretvsrilseLkreglisrg.rririldleaLral 68 
                 R+Ar++ +l+++ g     g  i+++ltq elA ++G+   ++ ++l+eL+ +gl+++  rri+++dl +Lral
  KIR62148.1 139 RVARVIAELCRTHGrrsrdGvVIDVRLTQPELATICGAAETSIQKTLRELRADGLVDTDyRRITVRDLPRLRAL 212
                 99999999966532222325999**********************************64245**********86 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   1.0   1.9e-08   4.9e-05       6      53 ..     139     196 ..     134     211 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.9e-08
                 HHHHHHHHHHCTTTS..........EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2   6 aqarvLaaLgrrpgr..........dltvgelarrlglsksavsrilkrLvaaGLver 53 
                   arv+a+L r  gr          +lt+ ela  +g    +++++l++L a GLv +
  KIR62148.1 139 RVARVIAELCRTHGRrsrdgvvidvRLTQPELATICGAAETSIQKTLRELRADGLVDT 196
                 679**********99********9999*****************************65 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   6.6e-06     0.017      17      47 ..     164     194 ..     162     195 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.6e-06
      HTH_24  17 risqreLAerlglSpstvnrrlkrLeeeGlI 47 
                 r++q eLA  +g   + + + l++L  +Gl+
  KIR62148.1 164 RLTQPELATICGAAETSIQKTLRELRADGLV 194
                 9****************************98 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.6     4e+03      40      53 ..      31      44 ..      29      47 .. 0.82
   2 ?   11.0   0.0   9.9e-05      0.25      23      56 ..     164     196 ..     160     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.6
                HHHHHHHHHHHTTS CS
        GntR 40 tvReALrrLeaegl 53
                 vRe++  L +egl
  KIR62148.1 31 GVRESHLVLLEEGL 44
                69999999999987 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 9.9e-05
                 B---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        GntR  23 kLPsereLaaefgVsrttvReALrrLeaeglver 56 
                 +L ++ eLa+  g   t++++ Lr+L a+glv  
  KIR62148.1 164 RL-TQPELATICGAAETSIQKTLRELRADGLVDT 196
                 57.888*************************976 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     6e-05      0.15      22      58 ..     164     200 ..     159     209 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6e-05
                 CCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB  22 patadeiaeelgvprskvYevLrsLedkGlVerekgr 58 
                 ++t  e+a + g  +++++++Lr+L   GlV++  +r
  KIR62148.1 164 RLTQPELATICGAAETSIQKTLRELRADGLVDTDYRR 200
                 56778999***********************987665 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012       0.3      27      55 ..     169     197 ..     163     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                     HHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
  Fe_dep_repress  27 dlaerLnvspssVsemlkkLekdGyveye 55 
                     +la + + +  s++++l++L+ dG+v++ 
      KIR62148.1 169 ELATICGAAETSIQKTLRELRADGLVDTD 197
                     78888888999***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1639.89
//
Query:       KIR62149.1  [L=271]
Description: hypothetical protein TK50_26310 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.21   12.0   1.6        1.2    9.6   1.6    2.0  1  FCD       FCD domain


Domain annotation for each model (and alignments):
>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.6   6.7e-05       1.2      36     104 ..      14     108 ..       6     110 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 6.7e-05
         FCD  36 leeaaaegdleefaeadraFHralaeaagnpvla............................elleelrarlrrlrrlalssperleeslaeHrail 104
                 +e  +++g+    +ea +aFH +l +aag   l+                            +++ el +rlr++ +++l +++r +  +a H+ ++
  KIR62149.1  14 MESYSRRGNIL-QYEAQQAFHDLLHAAAGAVGLDrvawstqragdgelailprdvaesrvigRFVPELDRRLRAYNSSRL-PAARVRLRIAVHQGLV 108
                 66666667664.79********************9999999999999999999999997777777777777777766654.8888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2049.16
//
Query:       KIR62150.1  [L=119]
Description: hypothetical protein TK50_26420 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-15   54.9   0.0    9.1e-15   54.7   0.0    1.0  1  HSP20       Hsp20/alpha crystallin family
    1.2e-10   40.8   0.0    2.2e-10   39.9   0.0    1.4  1  ArsA_HSP20  HSP20-like domain found in ArsA


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0     1e-18   9.1e-15       6     101 ..      19     111 ..      16     114 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1e-18
                 EEEEEEEEE-TT--.CCCEEEEEETTEEEEEEE--..---TT----SS---EEEEEE--STTB-TTT-EEEEETTEEEEEEEBSS--..-------- CS
       HSP20   6 eeefevkldvpglk.keelkvkvednrvlvkgeheeeeedekglikerssrkFsrkftLPenvdadkvkaslkdGvLtvtvpkkepekkkkerkiqi 101
                  +++ v++++pg++ +++++++++++++     ++  e+  + +++e ++++Fsr + LP ++++++ +a+++dG+L++t+   e+e  ++ r+i+i
  KIR62150.1  19 GDRYVVRAELPGVDpAKDVRITLTGENLRLDVVRR--ESHADKVRTEFHYGSFSRLVPLPAGLKQETLRAAYADGILEITATVGETE--PTAREIPI 111
                 689***********667*****************9..8888889999*************************************999..56788777 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   2.5e-14   2.2e-10       1      62 [.      19      96 ..      19      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 2.5e-14
  ArsA_HSP20  1 ddeyvlkldLPfvdke.eidlsrsgdeLtIkig................nfrRqitLPsvlarkevtsAkfedgvLeIr 62
                +d+yv++++LP+vd++ ++ ++ +g+ L + +                 +f+R ++LP  l++++  +A + dg LeI+
  KIR62150.1 19 GDRYVVRAELPGVDPAkDVRITLTGENLRLDVVrreshadkvrtefhygSFSRLVPLPAGLKQETL-RAAYADGILEIT 96
                589**********99868**********99999999****************************87.**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 922.72
//
Query:       KIR62151.1  [L=242]
Description: pyruvate formate lyase-activating protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      9e-27   94.5   0.0    1.3e-26   94.0   0.0    1.2  1  Radical_SAM  Radical SAM superfamily
    1.8e-14   54.2   0.0    2.4e-14   53.8   0.0    1.2  1  Fer4_12      4Fe-4S single cluster domain
    8.9e-09   35.5   0.0    1.2e-08   35.1   0.0    1.2  1  Fer4_14      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.0   2.1e-30   1.3e-26       3     158 ..      24     174 ..      22     181 .. 0.95

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 2.1e-30
                  EESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHH.HHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpetvrregrgrslsveeileevkelk.aekg.vkevilgggepllypdfvellerlaklavpgiritvetngtlpdeeklerll 98 
                  ++ gC+lrC+fC+ p t   ++ gr+ +v+e++++v++++ +    +++v+++ggepl++p+f+ +++r+++    g+++++ t+g+l   +  ++ll
   KIR62151.1  24 FLAGCPLRCRFCHSPDT-WYRRSGRHQTVDELMAQVQRYRrFISVaGGGVTISGGEPLMQPRFTGEVLRRCHA--LGLHTALDTSGFLG-ARADDALL 117
                  789*************9.99********************965556**************************9..7************9.9999**** PP

                  HTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  99 elgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGende 158
                  ++  d v l++++ d+ ++++ + r++++  +l+  ++l+++g   +++r v++pG +d+
   KIR62151.1 118 DAT-DLVLLDVKSRDPATYRRVT-RTGEIGPTLRFGRRLAARGTT-IWIRFVLVPGLTDA 174
                  *99.*************999999.*******************99.************97 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   4.1e-18   2.4e-14       1     118 [.      14     128 ..      14     138 .. 0.81

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 4.1e-18
     Fer4_12   1 lnGeGvrlslfvsgCnlsCkgCfnketwsfksgkeft.kelleei..iedlkkesiegltllGGEPllpenaeallelvkevkeekpekdiwlytgytl 96 
                 ++G+G+r++ f++gC+l+C++C+ ++tw  +sg+  t +el++++   +++      g+t++GGEPl+  + +   e+++++ + ++  + + ++g+  
  KIR62151.1  14 VDGPGTRFVAFLAGCPLRCRFCHSPDTWYRRSGRHQTvDELMAQVqrYRRFISVAGGGVTISGGEPLM--QPRFTGEVLRRCHALGL-HTALDTSGFLG 109
                 69**************************99999988765555554113444455559***********..9999**********999.58888888877 PP

     Fer4_12  97 eelskkekeellkeid.vlvdGk 118
                    +    + ll+  d vl+d+k
  KIR62151.1 110 ARAD----DALLDATDlVLLDVK 128
                 7775....467777775577776 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   2.1e-12   1.2e-08       5      73 ..      25      92 ..      21     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2.1e-12
     Fer4_14  5 lsgCnlsCkgCdnketwkselgkpqteelleqilk.dlkkseikiqglvltGGePLhyenkkellklvkr 73
                l+gC+l C++C   +tw  ++g  qt ++l ++++       ++  g++++GGePL+    +   ++++r
  KIR62151.1 25 LAGCPLRCRFCHSPDTWYRRSGRHQTVDELMAQVQrYRRFISVAGGGVTISGGEPLMQ--PRFTGEVLRR 92
                59******************999999998888886455556667789*********54..3344445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1713.00
//
Query:       KIR62152.1  [L=748]
Description: formate acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   6.6e-188  626.4   0.0     9e-188  625.9   0.0    1.1  1  PFL-like     Pyruvate formate lyase-like
    3.9e-40  136.7   0.0    7.1e-40  135.8   0.0    1.5  1  Gly_radical  Glycine radical
  ------ inclusion threshold ------
       0.13   10.6   0.0       0.38    9.1   0.0    1.6  2  DUF3029      Protein of unknown function (DUF3029)


Domain annotation for each model (and alignments):
>> PFL-like  Pyruvate formate lyase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  625.9   0.0  1.5e-191    9e-188       3     647 .]      21     607 ..      15     607 .. 0.98

  Alignments for each domain:
  == domain 1  score: 625.9 bits;  conditional E-value: 1.5e-191
                 HHHHH...HHHCC.HT.TS.E.EE.........SHHHHHHHHHHHHCTTS.-HHHHHHHHHHHHHHHS----.-TT-SS---SSSSTTEEE--TTTTCH CS
    PFL-like   3 erier...lkknytlyeakps.le.........lerarllteseketege.pvdirrakalakilsnlplyI.rddElIvGsqtkkprkraifPegsir 86 
                 +ri++   +++n ++y++++  l+         + r+ ++  +e++ +g+ +vd +++++   i++++p+yI  d ElIvG+qt++p+ rai+P+g++r
  KIR62152.1  21 TRIDVadfVRRNHEPYTGDAGfLAgptertlavWGRLTDMFGEERR-RGVyDVDPATPST---ITAHAPGYIdADRELIVGLQTDAPLRRAIMPAGGLR 115
                 5888888899999********889**********************.7888*********...*********99************************* PP

                 HHHTT.TTTCCCSSSSTEBEECHHHHHHHHHHHHHTTTSHHHHHHHHCHHTTHHHHTSTSEE--CHGGSSCEEEE--HHHHHTCHHHHHHHHHHHHHHH CS
    PFL-like  87 mlede.ldtlaereadgfeideeekkilreifpyWkgktvnegvfdayteetkaaresgiitvglpdasgrGhiipdyervlkyGldglieeikeklak 184
                 m+e +  ++       g+e d+ +++i+++     +++t+n++vfday+ +  aar+s+iit glpda+grG+ii+dy+rv++yG+d+l++e ++ +a+
  KIR62152.1 116 MVETAlRAY-------GYEPDPAVHRIYTR-----YRRTHNDAVFDAYPADVLAARRSHIIT-GLPDAYGRGRIIGDYRRVALYGVDRLVAERRALKAA 201
                 *****7777.......**************.....***************************.************************************ PP

                 HCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHTTTS--SSHHHHHHHHHHHHHHHHHHSSCCEEE-BSHH CS
    PFL-like 185 ldlddpeaiekaefykaviisleavieyaeryarlaeelaeqetdpkrkaeLleiaevcgrvpskpaetfqEAiQlvwfvhlalvkesngaamslgRld 283
                 ld                       +  +++++r++eelaeq   ++++ eL ++a+ +g+++s pa+t +EAiQ+++f++la+ ke+ngaamslgR+ 
  KIR62152.1 202 LD----------------------DRPSTDDVIREREELAEQ---IRALGELTQMAAAYGYDISGPATTGREAIQWLYFAYLAATKEQNGAAMSLGRTA 275
                 **......................78899*************...****************************************************** PP

                 HHTHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTTB-----HHHHCCCTTT--.--EEEEESB-TTSSB---HHHHHHHHHHHHH.--SSSEEEEEE-TT CS
    PFL-like 284 qylypyyekDleeGrlteeeaqelidclwlklrevrklrseeyaelfagydp.fqnltvGGqnedGrdavnelsyliLealenl.klpePnlsvrvskk 380
                  + + y+ +Dl+eGrl+e  aqel+d++++klr vr+lr++ey++lf+g dp ++++++GG+++dGr +v+++s+++L++l+nl ++pePnl+v++s +
  KIR62152.1 276 NFVDAYLRRDLAEGRLDEAGAQELVDDFVIKLRIVRFLRTPEYDQLFSG-DPtWVTESLGGIGADGRPLVTRTSFRYLQTLYNLgPAPEPNLTVLWSPR 373
                 *************************************************.777********************************************** PP

                 S-HHHHHHHHHHHHTTS--CEEEEHHHHHHHHHHTT--HHHHHTEEEETTTEEEECCCEES-SSEEEECHHHHHHHHTTTCETTTTCB-S-----GG.G CS
    PFL-like 381 lpeeflkkaaevsrkGlgspayenddviipallnrgvsledArdyaiaGCvepqipGkeeqffaarinlakaLelalnnGrdektgkqvgpktgdvt.e 478
                 lpe f++++a+vs++ +++++yend++i+p      ++  d  d aia+Cv+++++Gk++qff+ar+nlakaL++a+n+Grde tg qv+p+  +v  e
  KIR62152.1 374 LPEGFKRFCAQVSLD-TSAIQYENDELIRP------AY-DD--DTAIACCVSAMRVGKDMQFFGARANLAKALLYAINGGRDELTGDQVAPPAPPVGgE 462
                 ***************.**************......44.67..8****************************************************99* PP

                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHTSTTHHHHT--GGGT-SSEECEEEEEE-HHHHHHHHHHHHHHHTTSTSS-HHHHH CS
    PFL-like 479 fksyeelmeafkkqleylvklyvealniihymhdkyapepllsalvddciergkdlgegGarynfsgpqgvGlanvaDSLsAIkklVFddkkvtleeLk 577
                  ++y+e+ +a++  l++l+++yv+aln+ih mhd+ya+e+l++al+d  ++r +++g             +Gl++++DSL+AI++     +++ l++  
  KIR62152.1 463 TLDYDEVLAAYDRTLDWLAETYVDALNVIHHMHDRYAYERLEMALHDHPVHRFMATGV------------AGLSVAVDSLAAIRY----GRVKVLRD-A 544
                 **********************************************************............***************....********.* PP

                 HHHHTTTTT-HHHHHHHHHS--TTSS-HHHHHHHHHHHHHHHHHHCTSB-TTSCEEEEEE--TTTHHHHH CS
    PFL-like 578 ealaanFegeeelrqlllnaPkYGndddevDeiakevvetfaeevkkyknyrggkftaslltissnvpyg 647
                 ++la++++ e       ++ P YGnddd++Deia+++vetfae+++++++yr++++t+s+lti+snv+yg
  KIR62152.1 545 TGLAVDYAVE-------GEPPTYGNDDDRADEIAVWLVETFAEKLRRQRTYRDAELTMSVLTITSNVVYG 607
                 **********.......****************************************************8 PP

>> Gly_radical  Glycine radical
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.8   0.0   1.2e-43   7.1e-40       1     106 []     623     729 ..     623     729 .. 0.99

  Alignments for each domain:
  == domain 1  score: 135.8 bits;  conditional E-value: 1.2e-43
                  TTSTTSHHCCHHHCHCHHCCCCCCTSECGCETTEETTECCCCHHHHHHHCC-CCCCCCHHCCCCC.CT-SECEEEEETCCCHCCCCCSCGGGCCEEEE CS
  Gly_radical   1 lapganpmegrdkegplaslnSvakldyevaldgislnlkavpdalgkeeeerienlatlldgyf.eggfhlnvnvvsretLldAqehpekypqltiR 97 
                  +apganpm+grd++g +as  Svakl+y+ a dgisl+ +++pd lg++++eri+nla +ldgy  +ggfhlnvnv++r tLldA++hpe ypqlt+R
   KIR62152.1 623 FAPGANPMNGRDTHGLVASALSVAKLPYDAARDGISLTGTVTPDGLGHTRDERIANLAGVLDGYAdAGGFHLNVNVLDRATLLDAMAHPERYPQLTVR 720
                  79***************************************************************88******************************* PP

                  SSSSEEECC CS
  Gly_radical  98 VsGYavnFv 106
                  VsGYavnFv
   KIR62152.1 721 VSGYAVNFV 729
                  ********7 PP

>> DUF3029  Protein of unknown function (DUF3029)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   6.4e-05      0.38     162     221 ..     362     420 ..     342     437 .. 0.91
   2 ?   -2.3   0.0      0.18   1.1e+03     311     342 ..     554     586 ..     517     618 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 6.4e-05
     DUF3029 162 avPNltlkydeeitpddllrkavktilecakPsiaNhkllkkelgeeygivSCYNaLplg 221
                 + PNlt+ + +   p+ + r +++  l ++  +  N++l++ +++++ +i+ C  a+ +g
  KIR62152.1 362 PEPNLTVLWSPR-LPEGFKRFCAQVSLDTSAIQYENDELIRPAYDDDTAIACCVSAMRVG 420
                 57********98.8***************************************9999876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.18
     DUF3029 311 egkeeryGkd.eeanelgeeileklaelveetk 342
                 eg+  +yG+d ++a+e+++ ++e++ae++++++
  KIR62152.1 554 EGEPPTYGNDdDRADEIAVWLVETFAEKLRRQR 586
                 455667998625799999999999998876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5144.39
//
Query:       KIR62153.1  [L=165]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-20   71.8   0.0    1.1e-19   71.5   0.0    1.1  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
    3.3e-08   33.8   0.0    4.2e-08   33.4   0.0    1.2  1  Acetyltransf_1  Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   1.2e-23   1.1e-19       2     138 .]      11     140 ..      10     140 .. 0.78

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 1.2e-23
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmry....lpe.pltleeaeewlerawaeeseeeg.ygwaivlkdtgviGsvglrdleeedeeaelgymlaps 90 
                     + Lrp++++Dl+ +f++ +d + + +    +p  p+++++ e+     w++  ++ + ++ ++++ +t v+G v  ++++++    e++y+++++
      KIR62153.1  11 VRLRPVRDDDLPHFFAFEQDAQAN-WvaafGPVdPADRAAFEAH----WRRIRADPAiVTRTVTVDGT-VVGHVAAFPVDDQ---TEVSYWIDRA 96 
                     57*************999988876.7443333344544444444....55544445534455545677.8*******99998...8********* PP

  Acetyltransf_3  91 fwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                      wg+G at a++all  +      + ++a+++k+N aS +vl+k+Gf+
      KIR62153.1  97 RWGRGHATGALAALLAELP----RRPVRARAAKDNAASLAVLRKCGFV 140
                     ***************9994....444*********************5 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   4.7e-12   4.2e-08      15     117 .]      41     139 ..      16     139 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 4.7e-12
                     HHHHHHHHH.HHHHHHSTTCEEEE...EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTE CS
  Acetyltransf_1  15 pnedaseee.feesfsleaegllv...aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedn 105
                     p   a+ ++  +++ ++ a+  +v   +  dg+++G++ +++++d     +++ s++++++++g+G ++  l al+ ++ ++ +++      +dn
      KIR62153.1  41 PVDPADRAAfEAHWRRIRADPAIVtrtVTVDGTVVGHVAAFPVDD----QTEV-SYWIDRARWGRGHATGALAALLAELPRRPVRA---RAAKDN 127
                     344444444233444444444444599999***************....4555.9***************************7744...3459** PP

                     HHHHHHHHHTTE CS
  Acetyltransf_1 106 daairlYeklGF 117
                      a+ ++++k+GF
      KIR62153.1 128 AASLAVLRKCGF 139
                     *******99**9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1255.52
//
Query:       KIR62154.1  [L=428]
Description: tyrosyl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-75  251.7   0.0    1.2e-74  251.3   0.0    1.1  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)
    2.1e-05   24.3   0.1     0.0031   17.3   0.1    2.3  1  TyrRSs_C      Tyrosyl-tRNA synthetase C-terminal domain
    0.00028   20.5   0.0    0.00081   19.1   0.0    1.7  1  S4            S4 domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.3   0.0     2e-78   1.2e-74       5     292 ..      41     331 ..      38     332 .. 0.98

  Alignments for each domain:
  == domain 1  score: 251.3 bits;  conditional E-value: 2e-78
                   --EEEEEEETSSS.-BGGGHHHHHHHHHHHHTTSEEEEEEEHHHHHTTTTT-SSHHHHHHHHHHHHHH..HHHHHHHTCHTTT...EEEEETHHHHT CS
  tRNA-synt_1b   5 plrvysGidPTgk.lHlGylvplkklvelqkaghevffliaDlhAiigdpskaeerklrkreevlena..ikaqlakgldpek...aevvlqsewle 95 
                     ++y+G+dPT+  lH+G+l+ +++ ++lq  gh++++l+++++++igdp++++er+l+  e v+ ++  i+ ql+ +++      a++v++ +w  
    KIR62154.1  41 SATFYVGFDPTAAsLHVGHLMQVTTARRLQLGGHRPLLLVGGATGQIGDPKESAERTLNPPEVVAGWVdrIRDQLSPFVSYAGenaARLVNNLDWTG 137
                   5689**************************************************************************9986666689********* PP

                   THHHHHHHHHHHTTCBHHHHHHHHHCCHHCSSSC--BHHHHHHHHHHHHHHHHTCHS....EEEEEGGGHHHHHHHHHHHHHHHHHSTTSS-EEEEE CS
  tRNA-synt_1b  96 hlelaellrdlgklgslnrmlqfksvkkrleegegislgeftYplLqaaDilllkad....lvpgGsDQkqnielgrdlarrfnkkevfkkpegltv 188
                   ++++ e+lrd+gk++ +n+ml+++ vk rle+  gis++ef+Y+lLq+ D++ l+ +    l++gGsDQ++ni++g+d++rr +      +++++++
    KIR62154.1 138 EMSVVEFLRDVGKHFPVNKMLAREVVKARLET--GISFTEFSYQLLQSHDFYELHRRhgcqLQFGGSDQWGNITAGVDYVRRRGAG----PVQAFVT 228
                   ********************************..9**************************************************9....******* PP

                   T-BBSTTSSSBTTCETTCGC-BTTCCHHHHHHHHHHCHCSTTCSHHHHHHHHHTHHHCHHHHHHHHCCSEE.ESSHHHHHHHHHCCCCHHHHHHHHH CS
  tRNA-synt_1b 189 plltgldGekKmSKSagnsaIfLddekesvkkkiqkavtdsdeevekllklktelsnelierleavsgkkp.kreaeellaeevtklvhggdlkkal 284
                   pl+t++dG+ K++K++g+ a++Ld++ +s+++++q++++ +d++v ++l+++ + s ++ie+le+++ + p  r a+  laee t lvhg+    ++
    KIR62154.1 229 PLVTKADGT-KFGKTEGG-AVWLDPQLTSPYAFYQFWLNADDRDVVRYLRYFSFRSRDEIEQLEKETAERPaARLAQRALAEELTTLVHGERETAQA 323
                   *********.********.****************************************************************************** PP

                   HHHHHHHH CS
  tRNA-synt_1b 285 aealnell 292
                    +a+++l+
    KIR62154.1 324 VAASQALF 331
                   ***99998 PP

>> TyrRSs_C  Tyrosyl-tRNA synthetase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   5.2e-07    0.0031      26      95 ..     365     419 ..     360     426 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.2e-07
                 HHHHTTS-STHHHHHHHHHHT-EEEEE--S---SSS-SSS--------SHHHHHHHTT-SS-EEEEESSS CS
    TyrRSs_C  26 iLyaaGLasskseghrliakkgayvgsrpgkkkgekedelsftpiktwkpeetkkflidgklLiLrkGkw 95 
                 +L   GL+ s++e++r+ia+ gayv  ++               i++ +++ t+  l++g++L+Lr+Gk 
  KIR62154.1 365 LLRESGLVPSAKEARRVIAEGGAYVNNTR---------------ITEVDAKPTQADLLHGRYLVLRRGKK 419
                 67789*******************97544...............45555566666677777777777766 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.4e-07   0.00081       7      37 ..     366     396 ..     365     404 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.4e-07
                 HHHTTSSSSHHHHHHHHHTTTEEETTEEE-- CS
          S4   7 larlglassrreArqlIehGrVlVNGkvvkd 37 
                 l ++gl++s +eAr+ I +G+ +VN+ +++ 
  KIR62154.1 366 LRESGLVPSAKEARRVIAEGGAYVNNTRITE 396
                 889*************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2921.23
//
Query:       KIR62155.1  [L=294]
Description: inorganic polyphosphate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-56  192.0   0.0    1.5e-56  191.7   0.0    1.1  1  NAD_kinase  ATP-NAD kinase
     0.0093   15.6   0.0      0.016   14.9   0.0    1.3  1  DAGK_cat    Diacylglycerol kinase catalytic domain


Domain annotation for each model (and alignments):
>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.7   0.0   1.7e-60   1.5e-56      66     292 .]      48     269 ..      10     269 .. 0.93

  Alignments for each domain:
  == domain 1  score: 191.7 bits;  conditional E-value: 1.7e-60
                 EEECCC-TTTTTSSSEEEEEE-HHHHHHHHHHHHHCT-EEEEEESSS--SS-SEEGGGHHHHHHHHHHT-SEEEEEEEEEEEEEETTE......EEEEE CS
  NAD_kinase  66 dtrkaleafadagvdliivvGGDGTaldvarllqkaeiPvlgvnaGvkgfltefepeaaaellekllegeirvekrevldavimrskgeediadivien 164
                     ++ ++a +g++++ ++GGDGT+l++a+l ++a++P+lg+n+G++gfl+e e+++++ + +++++++++v++r++ld++ + + g+       ie+
  KIR62155.1  48 GVVPVTGPEAAEGAEIVFALGGDGTFLRAAELARPAKVPLLGINLGKVGFLAEAEIDDLDVAVRDVVDRNYTVDERLTLDVTAQFDGGP------TIES 140
                 56667778999*********************************************************************999999995......889* PP

                 EESSEEEEEESSSSS-EEEEEEETTEEEEEEEESEEEEE-TGGGGTHHHHTT--EE-TT---EEEEEESESSS----EEE-TT-EEEEEE-.SS--EEE CS
  NAD_kinase 165 svlnevviirgpgstlielelyvdtelleadqldglivstPtGstayslsaGgplisPgvlailivpicPhslssrpiVvssssklrirva.srseall 262
                 ++lne+ +++g ++ ++el + vd+++l+ +++dg++ +tPtGstay++s Ggp+++P+v+a+l+vpi +h+l srp+V ++ s+ +i+v+  ++ a+l
  KIR62155.1 141 WALNEISVEKGERAQMLELLVDVDGRPLSRYGCDGVVCATPTGSTAYAFSGGGPVVWPEVEALLLVPISAHALFSRPLVTAPTSTFSITVDpFTTLAVL 239
                 *************************************************************************************************** PP

                 EETTTEEEEE-TT-EEEEEEESSEEEEEE. CS
  NAD_kinase 263 aldGseelelspgdevrvtasdkkfklirl 292
                  +dG++ ++l+pg  v+v+++  +++++rl
  KIR62155.1 240 CCDGRRVYDLPPGAQVTVRRGALPVRVVRL 269
                 *************************99985 PP

>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.7e-06     0.016      10      76 ..      11      81 ..       4     100 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-06
                CTTTTHHHHHHHCHHHHHHCTCEEEEEE--STTH.....HHHHHHHHHHCC-SEEEEEESHHHHHHHHHHHC CS
    DAGK_cat 10 sGkgkgekllrkvrelleeagvelelieteepgd.....akelakeakeegvdlivvaGGDGtvsevlngll 76
                 G++++ + +r v+  l  ag+e++++  e ++            ea+e g+++++++GGDGt+  +++   
  KIR62155.1 11 TGRRRSTEHARAVAADLIAAGFEVRVVAEEADDLdlpgvVPVTGPEAAE-GAEIVFALGGDGTFLRAAELAR 81
                6888999999999999999999888888774433455434444566666.89***********988776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2169.78
//
Query:       KIR62156.1  [L=392]
Description: thiamin pyrophosphokinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-16   59.2   5.0      3e-16   59.2   5.0    2.2  2  TPPK_C         Thiamine pyrophosphokinase C terminal
    1.1e-06   28.7   0.0    1.9e-06   27.9   0.0    1.4  1  TPK_catalytic  Thiamin pyrophosphokinase, catalytic domain


Domain annotation for each model (and alignments):
>> TPPK_C  Thiamine pyrophosphokinase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.3      0.21   1.9e+03      24      33 ..      55      64 ..      52      68 .. 0.85
   2 !   59.2   5.0   3.3e-20     3e-16       1      52 []     334     385 ..     334     385 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.21
      TPPK_C 24 LvAvavallv 33
                LvAv+va+++
  KIR62156.1 55 LVAVGVAAVL 64
                8999999886 PP

  == domain 2  score: 59.2 bits;  conditional E-value: 3.3e-20
      TPPK_C   1 KGVsrLYrsrisggallllvlAaLvAvavallvspagqsfldllidtwnlla 52 
                 KGVsrLYr++isg++llllvl+a++A+a a++vs +g+ +l +++ +wn+++
  KIR62156.1 334 KGVSRLYRQSISGSSLLLLVLSAVAAMASAVAVSTVGKAYLGVVSEWWNNFV 385
                 9*************************************************96 PP

>> TPK_catalytic  Thiamin pyrophosphokinase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.1e-10   1.9e-06       9      49 ..     208     243 ..     203     293 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.1e-10
  TPK_catalytic   9 slrvcaDgGanrlyeeekerlellpdvivGDlDSirpevke 49 
                     + + +DgGa  l+     +++++pd+i+GD+DS++++v+ 
     KIR62156.1 208 PVLIGVDGGADALV-----EAGYTPDMIIGDMDSVTDDVLR 243
                    57899*********.....******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2627.23
//
Query:       KIR62157.1  [L=288]
Description: hypothetical protein TK50_26570 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      0.003   17.5   0.6      0.018   15.0   0.6    2.2  1  Glycos_transf_4  Glycosyl transferase family 4


Domain annotation for each model (and alignments):
>> Glycos_transf_4  Glycosyl transferase family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.6   9.9e-07     0.018       5     155 ..      73     238 ..      70     242 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.9e-07
  Glycos_transf_4   5 lltillilllGflDDvlglkarlKlilqilaalililtldlslttlglllt.......................qvlielglilavlltllviv 75 
                      l++ +  +++G++DDv+g ++ +K +  ++  l ++  + +++  ++++                         q    +g    vll   vi+
       KIR62157.1  73 LVAGVGGGAVGVYDDVVGARPEQKAAKGFAGHLAALREGRVTAGLVKIVGVgaaglaasallaadravaahprrQRHGAVGRTADVLLGAGVIA 166
                      667777899*******998888888888877777766666333333333333333344455555555556556568888999999********* PP

  Glycos_transf_4  76 gvtNavNliDGldGlaagvsiiialalvvlaavdgrsellllalallgallGfllfNrypAkvFmGDsgslflGlvlavl 155
                      g++N +Nl+D    l  g ++ +al+l+      +   +  +a+  +ga++G+l       +v +GD g+ ++G+vl+v+
       KIR62157.1 167 GTANLLNLLD----LRPGRALKSALLLGAPL---TGGPHGGIAAGAVGAAAGLLADDLDE-QVMVGDGGANAIGAVLGVA 238
                      **********....77777777777777766...34445555558899******999876.*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 1702.78
//
Query:       KIR62158.1  [L=388]
Description: glycosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-26   90.5   0.0    1.2e-25   90.0   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    3.8e-24   85.6   0.2    8.4e-24   84.5   0.2    1.6  1  Glyco_trans_1_4  Glycosyl transferases group 1
    2.6e-22   80.0  24.7    2.6e-22   80.0  24.7    3.4  3  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    1.7e-13   51.0   5.4    1.7e-13   51.0   5.4    2.5  2  Glyco_transf_4   Glycosyltransferase Family 4
    1.6e-05   25.2   0.1    4.2e-05   23.9   0.1    1.8  1  Glyco_trans_1_2  Glycosyl transferases group 1
    0.00072   19.3   2.8        0.6    9.8   0.1    2.2  2  Glyco_transf_5   Starch synthase catalytic domain


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   4.1e-29   1.2e-25       8     170 ..     190     345 ..     184     347 .. 0.94

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 4.1e-29
                      HTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEES CS
  Glycos_transf_1   8 klgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsi 101
                      + + + ++++ilsvgrl ++K++d+l++a+a+ + +  p+ ++viaG+g+    l +++ ++     v++lg+    d+  ll  ad++v++s 
       KIR62158.1 190 EFAVAAGQPLILSVGRLHPQKRYDVLVDAAARWRGR-TPPPVVVIAGSGPAYLPLAARISAARA--PVTLLGHRT--DVADLLAGADLAVVTSD 278
                      55667899************************9988.**********99999999999999887..99******9..***************** PP

                      SBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHH CS
  Glycos_transf_1 102 sEgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenar 170
                      +E+  + + EA+ ag+p ia+++gg++e+v d+   +lv+p++++a  +a+r ll+d+++r++lg+++ 
       KIR62158.1 279 WEARQLFAQEALRAGVPLIATAVGGLPELVGDAA--VLVPPGDIDAVDAAVRALLDDDDRRAELGRRGA 345
                      **********************************..*****************************9986 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.2   2.8e-27   8.4e-24       2     134 .]     198     333 ..     197     333 .. 0.91

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 2.8e-27
                      EEEEEES---GG.GTHHHHHHHHHHHH.H.H.EEEEEES---....HHHHHHHTT-T.TEEEE---THHHHHHHH-SEEEE--..---SHHHHH CS
  Glyco_trans_1_4   2 pvilfvGrleenvkgvdllleavpllrkk.d.vrlvivGdgp..rpeeleelaagleerveftGfvedlaellaaadvfvaPs..egfglkllE 89 
                      p il vGrl +++k+ d+l++a+++ r + +   +vi+G+gp      l ++++  ++ v+++G+++d+a+lla ad++v++s  e  +l + E
       KIR62158.1 198 PLILSVGRL-HPQKRYDVLVDAAARWRGRtPpPVVVIAGSGPayL--PLAARISAARAPVTLLGHRTDVADLLAGADLAVVTSdwEARQLFAQE 288
                      789******.566**************8854688*******9744..476677544566*************************99******** PP

                      HHHTT-EEEE-TGGGTTT--TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  90 amaaglpvVatdvggiaevvgengllvppgdpealaeailrLled 134
                      a+ ag+p +at+vgg++e+vg++++lvppgd +a  +a+ +Ll+d
       KIR62158.1 289 ALRAGVPLIATAVGGLPELVGDAAVLVPPGDIDAVDAAVRALLDD 333
                      *******************************************97 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0  24.7   8.8e-26   2.6e-22       1     157 [.      23     172 ..      23     175 .. 0.95
   2 ?    0.1  11.7      0.33   9.8e+02      36     130 ..     193     270 ..     171     287 .. 0.39
   3 !    6.5   2.9    0.0035        10      17      70 ..     268     334 ..     263     371 .. 0.65

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 8.8e-26
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgapeleedgvrvhrlpvprrpspladlaalralrrllrqrrerpdvvhahsptaglaarlarrr 94 
                      gG+g++v+ +ar+Laa+G  V v  pa+++++++ +++g+r  ++ +p++p ++ad++a++alrr+l  ++e++ vvhah++ agl+a+lar  
       KIR62158.1  23 GGVGQHVRSVARGLAAAGRAVLVCGPAATEEQFDFTGAGARFQPVEIPASP-TPADARAVAALRRAL--AAEPVAVVHAHGLRAGLVAVLAR-- 111
                      8**********************99***********************999.79*************..***********************.. PP

  Glyco_trans_4_4  95 rgiplvvtlhglllrrgsgavrrlyralerrllrradavlvvseaeaeelralgvpadrvvvv 157
                        +p+vvt+h++ l+rg   ++ l r +er+++r+a++ l  s++++ +++alg++++r++ v
       KIR62158.1 112 PAAPVVVTWHNAVLARG--LRGGLSRLAERFVARGARVALGASADLVGRAAALGAADARLAPV 172
                      59*********999887..566777888*******************************9987 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.33
  Glyco_trans_4_4  36 eedgvrvhrlpvprrpspladlaal.ralrrllrqrrerpdvvhahs..ptaglaarlarrrrgiplvvtlhglllrrgsgavrrlyralerrl 126
                      +++g +++ l v+r + p ++++ l  a++r+    r +p vv++ +  p   ++a++++ ++++p+ +  h +++++                
       KIR62158.1 193 VAAGQPLI-LSVGRLH-PQKRYDVLvDAAARWR--GRTPPPVVVIAGsgPAYLPLAARIS-AARAPVTLLGHRTDVADL--------------- 266
                      22222221.1222222.3344443324445553..4444444444441333333333444.567777776665544433............... PP

  Glyco_trans_4_4 127 lrra 130
                      l++a
       KIR62158.1 267 LAGA 270
                      3333 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0035
  Glyco_trans_4_4  17 rGheVtvltpapapg...apeleedgvrvhrlpvprrpspladlaal..........ralrrllrqr 70 
                      +G+++ v+t+++ ++   a+e+ ++gv+++   v+  p++++d+a l          +a+r+ll  +
       KIR62158.1 268 AGADLAVVTSDWEARqlfAQEALRAGVPLIATAVGGLPELVGDAAVLvppgdidavdAAVRALLDDD 334
                      4778888887766664444456677888888888888776666665555555555565666666222 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   5.4   5.6e-17   1.7e-13       2     155 ..      23     165 ..      22     173 .. 0.82
   2 !    4.7   2.1    0.0091        27      10     149 ..     135     285 ..     133     301 .. 0.63

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 5.6e-17
  Glyco_transf_4   2 GGverhvleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrlg 96 
                     GGv+ hv+ +ar+La++G  V v+ p+  +++ +    + r+  v +p ++ +  + +++ +lrr+l +e + vvHah+  a+++a+la      
      KIR62158.1  23 GGVGQHVRSVARGLAAAGRAVLVCGPAATEEQFDFTGAGARFQPVEIPASPTP-ADARAVAALRRALAAEPVAVVHAHGLRAGLVAVLARP---A 113
                     9***********************99999988888667777777777777666.6788899**********************99998766...8 PP

  Glyco_transf_4  97 iplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvp 155
                     +p+V+t H+          ++++  l r  er+++r a+  +  S  +  + ++ +g +
      KIR62158.1 114 APVVVTWHNAV------LARGLRGGLSRLAERFVARGARVALGASADLVGRAAA-LGAA 165
                     ***********......5677777777777777788888777777777666666.6655 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0091
  Glyco_transf_4  10 eLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvv.....Hahspaalgaallalrr.rlgip 98 
                     +La+++ +rG +V + +++d    + +     +  ++   +  +++r+ +++ r+  ++ +++p ++     H +  + +++ ++a +r r+ +p
      KIR62158.1 135 RLAERFVARGARVALGASADLVGRAAALGAADARLAPVAAPALPAPRRRRSAVRAEFAVAAGQPLILsvgrlHPQKRYDVLVDAAARWRgRTPPP 229
                     68888888888888887766655555532222222222233334445555555666666666666666666677777777776666666677888 PP

  Glyco_transf_4  99 lVltvHglyekrllkarlkplsrllralerrl.....lrradrviavSeatadelr 149
                     +V+ + +  ++ +l ar + +++ +  l  r+     l  ad  +++S+++a++l 
      KIR62158.1 230 VVVIAGSGPAYLPLAARISAARAPVTLLGHRTdvadlLAGADLAVVTSDWEARQLF 285
                     88777777764444555555555555555555666679999999999999999886 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   1.4e-08   4.2e-05      17      86 ..     288     357 ..     269     363 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.4e-08
  Glyco_trans_1_2  17 EaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydhr 86 
                      Ea+ +G+++++++  gl+el+  g+ ++l+   d + + +++r+ll+++++r+++++++ +r+ +  t +  
       KIR62158.1 288 EALRAGVPLIATAVGGLPELV--GDAAVLVPpgDIDAVDAAVRALLDDDDRRAELGRRGAARAATWPTEADT 357
                      8999********99******9..5567777779*****************************8766555555 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.3   0.00021      0.63      13      43 ..      20      50 ..      16      72 .. 0.87
   2 !    9.8   0.1    0.0002       0.6     120     173 ..      79     124 ..      71     142 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00021
  Glyco_transf_5 13 aktGGLadvvgaLpkaLaklghdvrvilPry 43
                    + tGG++++v++ ++ La++g  v v  P+ 
      KIR62158.1 20 SSTGGVGQHVRSVARGLAAAGRAVLVCGPAA 50
                    579*********************9988876 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0002
  Glyco_transf_5 120 raalelleklgw.kpdvihahDWhtalvpallkelykerglfkkiktvftiHNla 173
                     ra+++l + l    + v+hah   ++lv++l++ +         +++v+t HN  
      KIR62158.1  79 RAVAALRRALAAePVAVVHAHGLRAGLVAVLARPA---------APVVVTWHNAV 124
                     5666666666552599************9888874.........7********64 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2556.11
//
Query:       KIR62159.1  [L=776]
Description: hypothetical protein TK50_26585 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.076   12.6   0.0       0.21   11.1   0.0    1.6  2  Phosphodiest   Type I phosphodiesterase / nucleotide pyrophos


Domain annotation for each model (and alignments):
>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.2e-05      0.21       1      55 [.      38      92 ..      38     110 .. 0.77
   2 ?   -2.1   0.0      0.12   2.2e+03     194     230 ..     204     234 ..     179     279 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.2e-05
                  EEEEEETT-BTTHHHHHGSTSHHHHHHHHHSEEESE.EE-SS.S-SHHHHHHHHHHS CS
  Phosphodiest  1 vlvislDGlradlldrlaellpnlaaLakegvsapn.lrpvf.PtlTfpnhaslvTG 55
                  v+++++ Glr+d +d+  +++p l ++a++g+ +   +r+   Pt  + ++ +l  G
    KIR62159.1 38 VVLVGVAGLRWDDVDP--QTTPTLWRMAQQGSIGSLsVRSAHrPTCPVDGWLTLGAG 92
                  79**************..************998875555433144344455555555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.12
                   SHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEE CS
  Phosphodiest 194 spevedalrrvDkaigdLlealderglsaetniilvS 230
                    ++ +++ rr+D+ +++ l++ ++r      +++lv+
    KIR62159.1 204 RSARAEQARRADADLARVLAGRPPR------SLVLVA 234
                   5567899999999999999999988......445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 5119.35
//
Query:       KIR62160.1  [L=335]
Description: recombinase XerD [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-40  138.6   0.0    2.2e-40  138.3   0.0    1.2  1  Phage_integrase  Phage integrase family
    4.5e-20   71.7   0.3    1.5e-19   70.0   0.1    1.9  2  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   0.0   2.4e-44   2.2e-40       6     169 ..     138     317 ..     133     320 .. 0.93

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 2.4e-44
                      HHHHHHHHCCGC........HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEE.CTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHH... CS
  Phage_integrase   6 deverllaalee........slkirdklllellyetGlRisEllsLrvkdld.lengvilvheregKgskeravplseealellkellska... 87 
                      d v+rll+++          +l++rd++lle+ly+tG+RisE+++  ++dld l+ g++ v   +gKg++ r vp++  a+e+l+ +l +    
       KIR62160.1 138 DAVVRLLETAGPvtatgdgaPLALRDRALLEFLYGTGARISEAVGAAIDDLDgLDSGEAAV-LLRGKGGRTRLVPVGGYAVEALRAWLVRGrpa 230
                      6677777777666777788999****************************98789999999.89***************************9*9 PP

                      .CHCCTTTSBSSBETTSSB--HHHHHHHHHHHHHHCT-S....SC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCC CS
  Phage_integrase  88 .leeaeksellfaskrgkplsrqtvrkafkraveeagie....kpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthv 169
                       + +  ++ ++f+++rg  l+rq ++++++ra+e+ag+     ++++pHtlRhs+at+Ll  g+d+rvvq+llGH+s+ ttq+Yt v
       KIR62160.1 231 lVAAGRGTPAVFVNARGGALTRQGAWTILRRAAERAGLPvdgaNAVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLV 317
                      888888889*****************************999*******************************************976 PP

>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.1   1.7e-23   1.5e-19       1      84 []      24     112 ..      24     112 .. 0.98
   2 ?   -1.1   0.0      0.27   2.5e+03      14      27 ..     276     290 ..     272     329 .. 0.59

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 1.7e-23
                      HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHH.TS--TTT--HHHHHHHHHS-----.....-----HHHHHHHHHHHHHHHHHTT CS
  Phage_int_SAM_1   1 leqfleyLikerglspnTlraYrrdLrrflkflaergkesleqlttedvraflaeleeeg.....lsatslarrlsalrsFfqflvreg 84 
                      l+++l++L++ergls+nTl++YrrdL+r+l  la +g+ +l+++++  v a la+l++ +     l+ +s+ar+ sa+r++++f++reg
       KIR62160.1  24 LRGYLDHLTVERGLSANTLASYRRDLDRYLATLAAAGIADLATVGAGVVEAHLARLRAGDddhppLAVSSAARAASAVRGLHRFALREG 112
                      578*******************************************************99***************************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.27
                      S-HHHHH.HHHHHHH CS
  Phage_int_SAM_1  14 lspnTlr.aYrrdLr 27 
                      +sp+Tlr +Y   L 
       KIR62160.1 276 VSPHTLRhSYATHLL 290
                      677777635655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2330.85
//
Query:       KIR62161.1  [L=257]
Description: transposase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-16   60.5   0.0    1.8e-16   60.2   0.0    1.1  1  DDE_Tnp_4     DDE superfamily endonuclease
    4.7e-15   55.0   0.0    9.6e-15   54.1   0.0    1.5  1  HTH_Tnp_4     Helix-turn-helix of DDE superfamily endonucleas
    3.7e-11   43.1   0.3    5.6e-11   42.5   0.3    1.3  1  DDE_Tnp_1     Transposase DDE domain
     0.0081   16.2   0.1       0.03   14.4   0.0    1.9  2  SpoIIID       Stage III sporulation protein D
  ------ inclusion threshold ------
       0.06   13.1   0.0       0.46   10.3   0.0    2.2  2  HTH_38        Helix-turn-helix domain
      0.088   13.4   0.1       0.21   12.1   0.1    1.6  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0     6e-20   1.8e-16      23     158 .]     123     252 ..     107     252 .. 0.89

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 6e-20
   DDE_Tnp_4  23 nykkkntlkvlivvdpngkiif.vskgypGsvsDkeilensgllkalkeavkpgdvilaDkgFklsekllvpykk.kkkkqlseeevefnraiasarih 119
                 +++ +++ ++++++d+  + ++ + ++ pG   D+ +++ sg+ ++l     +g  ++aD ++++++++++py+k +++++l   ++  n+++  +r  
  KIR62161.1 123 SKNYRYSTNLQVAIDAHTRLVVaLGDPQPGNRNDTIAYRTSGIDQKL-----AGRPVMADGAYRGNPEVIIPYRKpTDGTELPDWKKDLNKHHRTIRAQ 216
                 566689***********9999889**********************5.....59*********************99********************** PP

   DDE_Tnp_4 120 vErvigrlkgrfrilrsrlriklvekidkivkvccvLhN 158
                 vE++++r+k +f+ilr  +r    +++ ++ + ++ LhN
  KIR62161.1 217 VEHALARMK-TFKILRD-YRRA-ASTLTDTASGIAHLHN 252
                 *********.*****75.5666.7999999999999998 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   3.2e-18   9.6e-15       1      49 [.      45      93 ..      45      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 3.2e-18
   HTH_Tnp_4  1 rkLsledqllltLvyLRlnltyqdLayrFgvsestvsrifhkwvdlLae 49
                ++L+l d++ll+  y+R+nlt+++++ +Fgvs s ++r++ ++ +lLa 
  KIR62161.1 45 WSLDLADRVLLVAAYWRTNLTMRQIGPLFGVSHSAAHRVIDTLGPLLAL 93
                689********************************************96 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.3   1.9e-14   5.6e-11       4     196 ..     102     235 ..      99     253 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 1.9e-14
   DDE_Tnp_1   4 revlivDattvrvpgtkedarwgyk.ggkykygyklhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr.kgklvlaDaGYa.saelldtleek 98 
                 +++ ivD+t+v++++++      +   + y+y  +l++a+d++++l++++    pgn++d+ ++++   ++++   g+ v aD++Y  ++e++   +  
  KIR62161.1 102 EQIAIVDGTLVPTRDHR-----LAApSKNYRYSTNLQVAIDAHTRLVVALGDPqPGNRNDTIAYRT--SGIDQKlAGRPVMADGAYRgNPEVIIPYR-- 191
                 6899*************.....5553777*********************9966************..7787778***********97799999999.. PP

   DDE_Tnp_1  99 gvdyiirlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrlryr 196
                                          + +   +   ++k  +++++                            ++R+q+E+  +++k+ f+++r + r
  KIR62161.1 192 -------------------------KPTDGTELPDWKKDLNKHHR----------------------------TIRAQVEHALARMKT-FKILRDYRR 235
                 .........................78888888888888888888............................***************.***998766 PP

>> SpoIIID  Stage III sporulation protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     1e-05      0.03       5      39 ..      50      83 ..      47     104 .. 0.88
   2 ?   -1.7   0.1       1.1   3.3e+03      61      70 ..     206     215 ..     201     232 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
     SpoIIID  5 eeRvleiakyiveskatvRkaakvfgvskstvhkD 39
                 +Rvl +a+y  +++ t+R++   fgvs s  h+ 
  KIR62161.1 50 ADRVLLVAAY-WRTNLTMRQIGPLFGVSHSAAHRV 83
                68*******9.5899******************85 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.1
     SpoIIID  61 knkaeRhiRG 70 
                  nk +R iR 
  KIR62161.1 206 LNKHHRTIRA 215
                 3444444442 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00015      0.46       5      35 ..      47      78 ..      43      84 .. 0.79
   2 ?   -0.2   0.0      0.28   8.5e+02      30      38 ..     206     214 ..     204     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
      HTH_38  5 LsleeReeIerl.laeGlslreIArrLgrsps 35
                L l++R+ + +  +  +l++r+I+ + g+s+s
  KIR62161.1 47 LDLADRVLLVAAyWRTNLTMRQIGPLFGVSHS 78
                777888777665379****************9 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.28
      HTH_38  30 LgrspsTIs 38 
                 L++++ TI 
  KIR62161.1 206 LNKHHRTIR 214
                 9******95 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   7.1e-05      0.21      11      46 ..      49      84 ..      43      88 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.1e-05
  LZ_Tnp_IS481 11 vlGrvllvrrvvedrrtvaqvarelGvslrtaykwl 46
                     rvllv    + + t++q+    Gvs  +a++ +
    KIR62161.1 49 LADRVLLVAAYWRTNLTMRQIGPLFGVSHSAAHRVI 84
                  567******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1907.09
//
Query:       KIR62162.1  [L=420]
Description: chromosome segregation ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-19   68.5   0.0      1e-18   67.0   0.0    1.9  1  DUF4041      Domain of unknown function (DUF4041)
    8.4e-13   48.8   1.5    4.8e-12   46.3   0.0    2.7  3  T5orf172     T5orf172 domain
    4.5e-11   43.3   3.1    4.8e-11   43.2   0.0    2.5  2  MUG113       Meiotically up-regulated gene 113
  ------ inclusion threshold ------
      0.031   14.5  17.5        1.9    8.8   0.6    4.7  3  DUF3618      Protein of unknown function (DUF3618)
      0.043   13.7   2.4       0.89    9.4   0.5    2.3  2  ExsD         Antiactivator protein ExsD
       0.06   13.7  20.3       0.34   11.2   6.7    3.1  2  OmpH         Outer membrane protein (OmpH-like)
       0.38   10.0  13.2        0.4    9.9   7.8    2.2  2  LegC3_N      LegC3 N-terminal coiled-coil domain
       0.67    9.0   7.7        1.7    7.6   1.9    2.3  2  Atg14        Vacuolar sorting 38 and autophagy-related subuni
       0.97    9.9  14.2      0.092   13.2   7.4    2.5  2  DUF1690      Protein of Unknown function (DUF1690)
          1    8.0   7.4       0.21   10.4   3.0    1.8  2  Herpes_UL17  Herpesvirus UL17 protein
        1.8    8.1  10.1       0.22   11.1   5.1    1.8  2  TMCO5        TMCO5 family
        2.4    7.3   4.5        1.1    8.4   2.0    1.7  2  TMPIT        TMPIT-like protein
        3.2    7.5  10.8        1.8    8.3   4.4    2.4  2  DUF724       Protein of unknown function (DUF724)


Domain annotation for each model (and alignments):
>> DUF4041  Domain of unknown function (DUF4041)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   7.3e-22     1e-18       1      56 []     146     201 ..     146     201 .. 0.99

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 7.3e-22
     DUF4041   1 KlmlrAFNgEcdaaiskVkynnietlekRIeksfeainklgktmnirItpeYlelK 56 
                 KlmlrA+N+E+d++++ +k+ +++++ +R+ k++ +i+klgktm+irI ++Y++l+
  KIR62162.1 146 KLMLRAYNAEADNLVRGLKPYKLDSAVDRLGKVAATIAKLGKTMQIRIAEDYHRLR 201
                 9*****************************************************98 PP

>> T5orf172  T5orf172 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.6   2.2e+03      25      45 ..      59      97 ..      55     114 .. 0.60
   2 ?   -1.9   1.3       3.5   4.9e+03      54      76 ..     222     246 ..     180     255 .. 0.49
   3 !   46.3   0.0   3.5e-15   4.8e-12       1      97 [.     296     384 ..     296     389 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.6
    T5orf172 25 n..vqrRlkelsk................yptkppsele 45
                +  ++rRl+ l++                y++  p +  
  KIR62162.1 59 KaeLDRRLRGLRQqivvteetallqeagvYQYRHPLSDA 97
                555899999999766666555555555554444444444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.5
    T5orf172  54 kvpnahrv..ErlihkeLadrryrv 76 
                 ++++  r+  Er +++e ++ r r+
  KIR62162.1 222 EREEKARLreERRAQQEIERERARL 246
                 2222222223666666666655555 PP

  == domain 3  score: 46.3 bits;  conditional E-value: 3.5e-15
    T5orf172   1 gyvYiltnessegetillKIGrtsn..vqrRlkelskyptkppselevvaekevrkvpnahrvErlihkeLadrryrvkcdcgkehrEwFevsleevde 97 
                 gyvY+++n + +ge++ +K+G+t++  +  R++els  ++++p++++v   ++   +++a  +E   h++Lad  +rv+  ++  +rE+F  ++ee++e
  KIR62162.1 296 GYVYVISNLGAFGEKM-VKVGMTRRldPLDRVRELS--DASVPFNFDV---HALFFSEDAVGIEAQMHARLAD--RRVNLVNH--RREFFYATPEEAKE 384
                 8*************66.*******************..89*******9...7789999***************..55554555..***********998 PP

>> MUG113  Meiotically up-regulated gene 113
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   2.2       6.7   9.3e+03      12      54 ..     201     245 ..     184     254 .. 0.53
   2 !   43.2   0.0   3.4e-14   4.8e-11       1      73 [.     312     385 ..     312     389 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.7
      MUG113  12 Rlnelnrqcpskltllryyppss..pnahrlErllhleLkdkrlr 54 
                 R++el+ + +++ +l +  +++   +   r Er+  +e +  r r
  KIR62162.1 201 RIKELELTADYQEKLAEEKEREReeKARLREERRAQQEIERERAR 245
                 455555555444444444433333233334455555555554444 PP

  == domain 2  score: 43.2 bits;  conditional E-value: 3.4e-14
      MUG113   1 lKIGrTn..nverRlnelnrqc.pskltllryyppsspnahrlErllhleLkdkrlrdekcdcEwFevpaeslkav 73 
                 +K+G+T+  ++ +R++el++++ p+++++++ + ++  +a  +E+++h +L+d+r++  + ++E+F  ++e++k+ 
  KIR62162.1 312 VKVGMTRrlDPLDRVRELSDASvPFNFDVHALFFSE--DAVGIEAQMHARLADRRVNLVNHRREFFYATPEEAKEH 385
                 5******9999***********************99..*********************9999*******999875 PP

>> DUF3618  Protein of unknown function (DUF3618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.6    0.0023       3.2       6      19 ..       7      20 ..       6      22 .. 0.92
   2 ?    8.8   0.6    0.0014       1.9      10      28 ..      36      54 ..      35      59 .. 0.92
   3 ?    5.0   1.9     0.021        29       7      19 ..     235     247 ..     232     264 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0023
     DUF3618  6 eIerdIertRaeLa 19
                +++++ e++RaeLa
  KIR62162.1  7 RLRAELEQARAELA 20
                69***********9 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0014
     DUF3618 10 dIertRaeLaeTvdeLaar 28
                + e++R++L++ +  L+a+
  KIR62162.1 36 ELEQQRDRLGRELADLTAK 54
                78***************98 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.021
     DUF3618   7 IerdIertRaeLa 19 
                  +++Ier Ra+L 
  KIR62162.1 235 AQQEIERERARLD 247
                 699********95 PP

>> ExsD  Antiactivator protein ExsD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.038        52     130     225 ..      36     130 ..       7     137 .. 0.75
   2 ?    9.4   0.5   0.00065      0.89     113     217 ..     188     293 ..     170     298 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.038
        ExsD 130 essqireqllklveslqtklkaqkaelvelesklkeseklvveaWPnfqkslsnlkeladltstepvsEa......LeelWdalitl.endleaakkvk 221
                 e +q r+ l +++++l +k kaqkae   l+ +l    +++v       ++ + l+e + ++  +p+s+a      L+ + d +  +  +d +a+k+  
  KIR62162.1  36 ELEQQRDRLGRELADLTAKGKAQKAE---LDRRLRGLRQQIVV-----TEETALLQEAGVYQYRHPLSDAvayqsqLSRIQDQIKAMaRKDGGAVKAAT 126
                 567889999999************99...88888776666654.....446677888888888888888877777777777777655246777777777 PP

        ExsD 222 kWlk 225
                  W +
  KIR62162.1 127 GWTV 130
                 7766 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00065
        ExsD 113 inqleikkefWsklaEkessqireqllklveslqtklkaqkaelve...lesklkeseklvveaWPnfqkslsnlkeladltstepvsEaLeelWdali 208
                 + q++i +++  +l  ke +  ++ + k +++ + + +++ka+l e    +++++++ + + +    + + l++l++ +d  +  ++ + L ++  a++
  KIR62162.1 188 TMQIRIAEDY-HRLRIKELELTADYQEK-LAEEKEREREEKARLREerrAQQEIERERARLDKERQHYANALAALQAKGDTDGAAQMQDRLAQIDTAIQ 284
                 5688888888.77777777777777777.77777777777777765222566777777777777789*************************9999999 PP

        ExsD 209 tlendleaa 217
                  +++   ++
  KIR62162.1 285 DVDHRAANV 293
                 999987776 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.6    0.0054       7.4      25     104 ..       2      83 ..       1     122 [. 0.78
   2 ?   11.2   6.7   0.00025      0.34      29     106 ..     209     287 ..     170     324 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0054
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS....-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  25 ekkfkklqaeleakekelqklqeelqkkakkle...keekeqelqkkeqelqqkqqqkaqelqkkqqellkpildkinkaike 104
                 +++ ++l+aele+ ++el  l++e+ +  +  +    e+++  l ++ ++l +k ++++ el ++ + l+++i+   ++a+ +
  KIR62162.1   2 AAEGTRLRAELEQARAELAGLRAEMSRLGML-SvleLEQQRDRLGRELADLTAKGKAQKAELDRRLRGLRQQIVVTEETALLQ 83 
                 57888999*****************744433.366445555559999999999787778************999877777655 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00025
                 HHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHH CS
        OmpH  29 kklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqe.......llkpildkinkaikeva 106
                 +++q++l+++++  ++++++l +      +++++qe+++++++l +++q  a+ l++ q++        ++  l +i++ai++v 
  KIR62162.1 209 ADYQEKLAEEKEREREEKARLRE------ERRAQQEIERERARLDKERQHYANALAALQAKgdtdgaaQMQDRLAQIDTAIQDVD 287
                 33344444333333333333321......44555557777777777555555666666666666666666667777888886664 PP

>> LegC3_N  LegC3 N-terminal coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2     0.038        53      90     130 ..      53      93 ..      36     124 .. 0.64
   2 ?    9.9   7.8   0.00029       0.4      63     139 ..     202     279 ..     180     298 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.038
                 HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT--- CS
     LegC3_N  90 rkdkkqkekLtreleaikaekseyerellllelklerlles 130
                  k k qk +L r+l+ +++++   e+  ll+e  + +  ++
  KIR62162.1  53 AKGKAQKAELDRRLRGLRQQIVVTEETALLQEAGVYQYRHP 93 
                 46677888888888888888877776666666555444443 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00029
                 HHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT------------ CS
     LegC3_N  63 kkaLEkqa.YkqQlkEDkkekerdeeeerkdkkqkekLtreleaikaekseyerellllelklerllesqtkvevtqh 139
                 +k+LE  a Y++ l+E+k+  +++++  r++++ ++++ re   + +e+++y + l  l+ k     + q++    q 
  KIR62162.1 202 IKELELTAdYQEKLAEEKEREREEKARLREERRAQQEIERERARLDKERQHYANALAALQAKGDTDGAAQMQDRLAQI 279
                 567886655********99999999999999*************************9999998888888887666655 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.4      0.01        14      92     155 ..       7      67 ..       2     135 .. 0.66
   2 ?    7.6   1.9    0.0013       1.7      36     168 ..     202     304 ..     166     343 .. 0.55

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.01
       Atg14  92 qlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiaklqdaikrieqklsslssktl 155
                 +l++e+e+++++la+l+++++ R     +   ele+ r ++ ++l d + + + ++++l + + 
  KIR62162.1   7 RLRAELEQARAELAGLRAEMS-RLGM--LSVLELEQQRDRLGRELADLTAKGKAQKAELDRRLR 67 
                 678889999999999999985.5555..555677777777777777777766666665554443 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0013
       Atg14  36 sekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekk...kklaklsdklk.kRrsdleslqneleerrk 130
                 ++  +l                                   ad +e+l+e k++ ++ k++++e +   +++++ ++ l  +R+  +++l    ++  +
  KIR62162.1 202 IKELELT----------------------------------ADYQEKLAEEKEREREEKARLREERraqQEIERERARLDkERQHYANALAALQAKGDT 266
                 2222222..................................2222222222222222222222221111334444444432333333444444444556 PP

       Atg14 131 kqiaklqdaikrieqklsslssktlesrsslcselakl 168
                 +  a++qd + +i+  ++++ +  +  r+  +  +++l
  KIR62162.1 267 DGAAQMQDRLAQIDTAIQDVDHRAANVRAGYVYVISNL 304
                 66666666666777777777776666666666666665 PP

>> DUF1690  Protein of Unknown function (DUF1690)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.5      0.82   1.1e+03      55      94 ..      38      75 ..       7     118 .. 0.65
   2 ?   13.2   7.4   6.7e-05     0.092      30     102 ..     184     256 ..     172     290 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.82
     DUF1690 55 kkfeeklekellkdeadakdelsskalnekieeLrkklee 94
                ++  ++l +el++ +  ak + ++++l++ ++ Lr+++  
  KIR62162.1 38 EQQRDRLGRELADLT--AKGKAQKAELDRRLRGLRQQIVV 75
                333334444444433..55666666666666666666655 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 6.7e-05
     DUF1690  30 alekliqerVaeeLkkLraeeeetlkkfeeklekellkdeadakdelsskalnekieeLrkkleefkkkeeek 102
                 +l k  q r+ae+ ++Lr +e e  ++ +ekl++e+  + +++ +   + + +++ie  r++l++ +++  + 
  KIR62162.1 184 KLGKTMQIRIAEDYHRLRIKELELTADYQEKLAEEKEREREEKARLREERRAQQEIERERARLDKERQHYANA 256
                 5678999*****************************99999999999999***************77765544 PP

>> Herpes_UL17  Herpesvirus UL17 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.27   3.8e+02     188     223 ..      56     125 ..       2     160 .. 0.62
   2 ?   10.4   3.0   0.00015      0.21     123     219 ..     191     293 ..     187     364 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.27
  Herpes_UL17 188 c..................................apgafdeaaaearlkddfdeilslikraaeavnkr 223
                                                     + + +d++a +++l+ + d+i++ +++  +av+++
   KIR62162.1  56 KaqkaeldrrlrglrqqivvteetallqeagvyqyRHPLSDAVAYQSQLSRIQDQIKAMARKDGGAVKAA 125
                  0333333344444555555555556666666777777777888888777777777777777666666654 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00015
  Herpes_UL17 123 lRlaipdga.eyrdllFt...ydeLlpegtrynadaerlralcrqllaytrlpaalpsaakeaaahleac..apgafdeaaaearlkddfdeilslik 214
                  +R+a + ++ ++++l++t   ++ L +e++r +++++rlr+  r  ++  r +a+l+++++ +a+ l a   + +++ +a+ + rl++++ +i + + 
   KIR62162.1 191 IRIAEDYHRlRIKELELTadyQEKLAEEKEREREEKARLREERRAQQEIERERARLDKERQHYANALAALqaKGDTDGAAQMQDRLAQIDTAIQDVDH 288
                  677766666788888887332468******************99999999*****************9997666666677778888899999999888 PP

  Herpes_UL17 215 raaea 219
                  raa++
   KIR62162.1 289 RAANV 293
                  88875 PP

>> TMCO5  TMCO5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.85   1.2e+03      87     124 ..      34      70 ..       7     116 .. 0.53
   2 ?   11.1   5.1   0.00016      0.22      43     102 ..     212     272 ..     188     296 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.85
       TMCO5  87 vveLqkkisrkeskqddleketlkqkleelkvklqkse 124
                 v+eL+++ +r+ ++  dl+  + k + +el  +l  + 
  KIR62162.1  34 VLELEQQRDRLGRELADLTA-KGKAQKAELDRRLRGLR 70 
                 55555555555443334443.22333333333333332 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00016
       TMCO5  43 ldsllereedeeenfsen.ekedalkeLeletaklekkneiLlkevveLqkkisrkeskqd 102
                  ++l+e++e+e e+ +   e+ +a +e+e e a+l+k+ ++  + ++ Lq k + +   q 
  KIR62162.1 212 QEKLAEEKEREREEKARLrEERRAQQEIERERARLDKERQHYANALAALQAKGDTDGAAQM 272
                 357788888887766655055567788***********************99666554333 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   1.6e+03      93      93 ..      85      85 ..      11     150 .. 0.60
   2 ?    8.4   2.0   0.00082       1.1       7      97 ..     211     298 ..     202     313 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
       TMPIT 93 n 93
                 
  KIR62162.1 85 A 85
                1 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00082
       TMPIT   7 lekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlkevesllpkknglyl 97 
                  ++++ e +e+++e k++l+e  + q+++ +e ++  k+ ++  ++l  l+++    + + +++++++l+++++ +++v++   + +  y+
  KIR62162.1 211 YQEKLAEEKEREREEKARLREERRAQQEIERERARLDKERQHYANALAALQAK---GDTDGAAQMQDRLAQIDTAIQDVDHRAANVRAGYV 298
                 45556666677788888899999999999999999999999999999999988...57888999999999999999999887666554444 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.4     0.071        97      96     177 ..      33     114 ..       4     121 .. 0.66
   2 ?    8.3   4.4    0.0013       1.8      93     180 ..     201     289 ..     160     296 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.071
      DUF724  96 kLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallk...ekkeaadkeiarlkseaekleeeledv 177
                  +l+l +++++l +e+ +l  k    +++k++l+  ++ l ++i+  e+ + l      +  +  ++ ++ +s+ ++++++++++
  KIR62162.1  33 SVLELEQQRDRLGRELADLTAK---GKAQKAELDRRLRGLRQQIVVTEETALLQEagvYQYRHPLSDAVAYQSQLSRIQDQIKAM 114
                 4567777777777777775544...445556777888888888887777665444666555555666666666666666666655 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0013
      DUF724  93 rlnkLlslkdeqtklleerkkl...ekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqe 180
                 r+++L    d q+kl+ee+++    + +++ee+ +++++e e + l+k+ ++  + la+l++k   +    a+++   ++++++++dv ++
  KIR62162.1 201 RIKELELTADYQEKLAEEKEREreeKARLREERRAQQEIERERARLDKERQHYANALAALQAKG--DTDGAAQMQDRLAQIDTAIQDVDHR 289
                 5666666666666666655543100233455556666666666666666666666666666544..4445677778888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1997  (0.111384); expected 358.6 (0.02)
Passed bias filter:                      708  (0.0394891); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 2732.03
//
Query:       KIR62163.1  [L=175]
Description: hypothetical protein TK50_26785 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.55
# Mc/sec: 959.93
//
Query:       KIR62164.1  [L=257]
Description: transposase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-16   60.5   0.0    1.8e-16   60.2   0.0    1.1  1  DDE_Tnp_4     DDE superfamily endonuclease
    4.7e-15   55.0   0.0    9.6e-15   54.1   0.0    1.5  1  HTH_Tnp_4     Helix-turn-helix of DDE superfamily endonucleas
    3.7e-11   43.1   0.3    5.6e-11   42.5   0.3    1.3  1  DDE_Tnp_1     Transposase DDE domain
     0.0081   16.2   0.1       0.03   14.4   0.0    1.9  2  SpoIIID       Stage III sporulation protein D
  ------ inclusion threshold ------
       0.06   13.1   0.0       0.46   10.3   0.0    2.2  2  HTH_38        Helix-turn-helix domain
      0.088   13.4   0.1       0.21   12.1   0.1    1.6  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0     6e-20   1.8e-16      23     158 .]     123     252 ..     107     252 .. 0.89

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 6e-20
   DDE_Tnp_4  23 nykkkntlkvlivvdpngkiif.vskgypGsvsDkeilensgllkalkeavkpgdvilaDkgFklsekllvpykk.kkkkqlseeevefnraiasarih 119
                 +++ +++ ++++++d+  + ++ + ++ pG   D+ +++ sg+ ++l     +g  ++aD ++++++++++py+k +++++l   ++  n+++  +r  
  KIR62164.1 123 SKNYRYSTNLQVAIDAHTRLVVaLGDPQPGNRNDTIAYRTSGIDQKL-----AGRPVMADGAYRGNPEVIIPYRKpTDGTELPDWKKDLNKHHRTIRAQ 216
                 566689***********9999889**********************5.....59*********************99********************** PP

   DDE_Tnp_4 120 vErvigrlkgrfrilrsrlriklvekidkivkvccvLhN 158
                 vE++++r+k +f+ilr  +r    +++ ++ + ++ LhN
  KIR62164.1 217 VEHALARMK-TFKILRD-YRRA-ASTLTDTASGIAHLHN 252
                 *********.*****75.5666.7999999999999998 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   3.2e-18   9.6e-15       1      49 [.      45      93 ..      45      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 3.2e-18
   HTH_Tnp_4  1 rkLsledqllltLvyLRlnltyqdLayrFgvsestvsrifhkwvdlLae 49
                ++L+l d++ll+  y+R+nlt+++++ +Fgvs s ++r++ ++ +lLa 
  KIR62164.1 45 WSLDLADRVLLVAAYWRTNLTMRQIGPLFGVSHSAAHRVIDTLGPLLAL 93
                689********************************************96 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.3   1.9e-14   5.6e-11       4     196 ..     102     235 ..      99     253 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 1.9e-14
   DDE_Tnp_1   4 revlivDattvrvpgtkedarwgyk.ggkykygyklhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr.kgklvlaDaGYa.saelldtleek 98 
                 +++ ivD+t+v++++++      +   + y+y  +l++a+d++++l++++    pgn++d+ ++++   ++++   g+ v aD++Y  ++e++   +  
  KIR62164.1 102 EQIAIVDGTLVPTRDHR-----LAApSKNYRYSTNLQVAIDAHTRLVVALGDPqPGNRNDTIAYRT--SGIDQKlAGRPVMADGAYRgNPEVIIPYR-- 191
                 6899*************.....5553777*********************9966************..7787778***********97799999999.. PP

   DDE_Tnp_1  99 gvdyiirlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrlryr 196
                                          + +   +   ++k  +++++                            ++R+q+E+  +++k+ f+++r + r
  KIR62164.1 192 -------------------------KPTDGTELPDWKKDLNKHHR----------------------------TIRAQVEHALARMKT-FKILRDYRR 235
                 .........................78888888888888888888............................***************.***998766 PP

>> SpoIIID  Stage III sporulation protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     1e-05      0.03       5      39 ..      50      83 ..      47     104 .. 0.88
   2 ?   -1.7   0.1       1.1   3.3e+03      61      70 ..     206     215 ..     201     232 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
     SpoIIID  5 eeRvleiakyiveskatvRkaakvfgvskstvhkD 39
                 +Rvl +a+y  +++ t+R++   fgvs s  h+ 
  KIR62164.1 50 ADRVLLVAAY-WRTNLTMRQIGPLFGVSHSAAHRV 83
                68*******9.5899******************85 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.1
     SpoIIID  61 knkaeRhiRG 70 
                  nk +R iR 
  KIR62164.1 206 LNKHHRTIRA 215
                 3444444442 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00015      0.46       5      35 ..      47      78 ..      43      84 .. 0.79
   2 ?   -0.2   0.0      0.28   8.5e+02      30      38 ..     206     214 ..     204     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
      HTH_38  5 LsleeReeIerl.laeGlslreIArrLgrsps 35
                L l++R+ + +  +  +l++r+I+ + g+s+s
  KIR62164.1 47 LDLADRVLLVAAyWRTNLTMRQIGPLFGVSHS 78
                777888777665379****************9 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.28
      HTH_38  30 LgrspsTIs 38 
                 L++++ TI 
  KIR62164.1 206 LNKHHRTIR 214
                 9******95 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   7.1e-05      0.21      11      46 ..      49      84 ..      43      88 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.1e-05
  LZ_Tnp_IS481 11 vlGrvllvrrvvedrrtvaqvarelGvslrtaykwl 46
                     rvllv    + + t++q+    Gvs  +a++ +
    KIR62164.1 49 LADRVLLVAAYWRTNLTMRQIGPLFGVSHSAAHRVI 84
                  567******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.54
# Mc/sec: 1430.76
//
Query:       KIR62165.1  [L=680]
Description: hypothetical protein TK50_26975 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-05   23.6   1.2    0.00016   22.4   1.2    1.7  1  DUF1998   Domain of unknown function (DUF1998)


Domain annotation for each model (and alignments):
>> DUF1998  Domain of unknown function (DUF1998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   1.2   8.8e-09   0.00016       1      82 [.     536     639 ..     536     640 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 8.8e-09
     DUF1998   1 lehalinalplflqcdesdlgteckapedep.rkrpariliydavpgGaGi.....aekaaellee......llraalelieecd....Cee....... 76 
                 l+h li+ +++ +++ +++l+++++a    p r   a++li +++++++G+     a +      +      ll  al+++++c+    C +       
  KIR62165.1 536 LAHILIREMAMSCGYGAASLSERLYAWPATPdRPAAAGLLICTTASDSEGTlgglvALS------QperlhgLLLDALRRAARCSsdpvCGQrtprhge 628
                 68***********************554444689*****************33333333......1445555*********99*445889559****** PP

     DUF1998  77 .....aGCpaC 82 
                      a+C+ C
  KIR62165.1 629 dflhgAACHCC 639
                 *********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 4316.55
//
Query:       KIR62166.1  [L=257]
Description: transposase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-16   60.5   0.0    1.8e-16   60.2   0.0    1.1  1  DDE_Tnp_4     DDE superfamily endonuclease
    4.7e-15   55.0   0.0    9.6e-15   54.1   0.0    1.5  1  HTH_Tnp_4     Helix-turn-helix of DDE superfamily endonucleas
    3.7e-11   43.1   0.3    5.6e-11   42.5   0.3    1.3  1  DDE_Tnp_1     Transposase DDE domain
     0.0081   16.2   0.1       0.03   14.4   0.0    1.9  2  SpoIIID       Stage III sporulation protein D
  ------ inclusion threshold ------
       0.06   13.1   0.0       0.46   10.3   0.0    2.2  2  HTH_38        Helix-turn-helix domain
      0.088   13.4   0.1       0.21   12.1   0.1    1.6  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0     6e-20   1.8e-16      23     158 .]     123     252 ..     107     252 .. 0.89

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 6e-20
   DDE_Tnp_4  23 nykkkntlkvlivvdpngkiif.vskgypGsvsDkeilensgllkalkeavkpgdvilaDkgFklsekllvpykk.kkkkqlseeevefnraiasarih 119
                 +++ +++ ++++++d+  + ++ + ++ pG   D+ +++ sg+ ++l     +g  ++aD ++++++++++py+k +++++l   ++  n+++  +r  
  KIR62166.1 123 SKNYRYSTNLQVAIDAHTRLVVaLGDPQPGNRNDTIAYRTSGIDQKL-----AGRPVMADGAYRGNPEVIIPYRKpTDGTELPDWKKDLNKHHRTIRAQ 216
                 566689***********9999889**********************5.....59*********************99********************** PP

   DDE_Tnp_4 120 vErvigrlkgrfrilrsrlriklvekidkivkvccvLhN 158
                 vE++++r+k +f+ilr  +r    +++ ++ + ++ LhN
  KIR62166.1 217 VEHALARMK-TFKILRD-YRRA-ASTLTDTASGIAHLHN 252
                 *********.*****75.5666.7999999999999998 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   3.2e-18   9.6e-15       1      49 [.      45      93 ..      45      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 3.2e-18
   HTH_Tnp_4  1 rkLsledqllltLvyLRlnltyqdLayrFgvsestvsrifhkwvdlLae 49
                ++L+l d++ll+  y+R+nlt+++++ +Fgvs s ++r++ ++ +lLa 
  KIR62166.1 45 WSLDLADRVLLVAAYWRTNLTMRQIGPLFGVSHSAAHRVIDTLGPLLAL 93
                689********************************************96 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.3   1.9e-14   5.6e-11       4     196 ..     102     235 ..      99     253 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 1.9e-14
   DDE_Tnp_1   4 revlivDattvrvpgtkedarwgyk.ggkykygyklhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr.kgklvlaDaGYa.saelldtleek 98 
                 +++ ivD+t+v++++++      +   + y+y  +l++a+d++++l++++    pgn++d+ ++++   ++++   g+ v aD++Y  ++e++   +  
  KIR62166.1 102 EQIAIVDGTLVPTRDHR-----LAApSKNYRYSTNLQVAIDAHTRLVVALGDPqPGNRNDTIAYRT--SGIDQKlAGRPVMADGAYRgNPEVIIPYR-- 191
                 6899*************.....5553777*********************9966************..7787778***********97799999999.. PP

   DDE_Tnp_1  99 gvdyiirlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrlryr 196
                                          + +   +   ++k  +++++                            ++R+q+E+  +++k+ f+++r + r
  KIR62166.1 192 -------------------------KPTDGTELPDWKKDLNKHHR----------------------------TIRAQVEHALARMKT-FKILRDYRR 235
                 .........................78888888888888888888............................***************.***998766 PP

>> SpoIIID  Stage III sporulation protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     1e-05      0.03       5      39 ..      50      83 ..      47     104 .. 0.88
   2 ?   -1.7   0.1       1.1   3.3e+03      61      70 ..     206     215 ..     201     232 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
     SpoIIID  5 eeRvleiakyiveskatvRkaakvfgvskstvhkD 39
                 +Rvl +a+y  +++ t+R++   fgvs s  h+ 
  KIR62166.1 50 ADRVLLVAAY-WRTNLTMRQIGPLFGVSHSAAHRV 83
                68*******9.5899******************85 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.1
     SpoIIID  61 knkaeRhiRG 70 
                  nk +R iR 
  KIR62166.1 206 LNKHHRTIRA 215
                 3444444442 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00015      0.46       5      35 ..      47      78 ..      43      84 .. 0.79
   2 ?   -0.2   0.0      0.28   8.5e+02      30      38 ..     206     214 ..     204     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
      HTH_38  5 LsleeReeIerl.laeGlslreIArrLgrsps 35
                L l++R+ + +  +  +l++r+I+ + g+s+s
  KIR62166.1 47 LDLADRVLLVAAyWRTNLTMRQIGPLFGVSHS 78
                777888777665379****************9 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.28
      HTH_38  30 LgrspsTIs 38 
                 L++++ TI 
  KIR62166.1 206 LNKHHRTIR 214
                 9******95 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   7.1e-05      0.21      11      46 ..      49      84 ..      43      88 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.1e-05
  LZ_Tnp_IS481 11 vlGrvllvrrvvedrrtvaqvarelGvslrtaykwl 46
                     rvllv    + + t++q+    Gvs  +a++ +
    KIR62166.1 49 LADRVLLVAAYWRTNLTMRQIGPLFGVSHSAAHRVI 84
                  567******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2015.25
//
Query:       KIR62167.1  [L=278]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-40  137.2   9.5    5.5e-40  137.2   9.5    1.9  2  MLTR_LBD  MmyB-like transcription regulator ligand binding do
    9.5e-16   57.9   5.6    2.1e-15   56.8   5.6    1.6  1  HTH_31    Helix-turn-helix domain
    4.1e-07   29.9   0.0    6.4e-07   29.3   0.0    1.3  1  HTH_3     Helix-turn-helix
  ------ inclusion threshold ------
      0.035   14.2   0.0      0.086   12.9   0.0    1.7  1  PAS_8     PAS domain
       0.14   12.3   0.0       0.39   10.9   0.0    1.8  1  PAS_7     PAS fold


Domain annotation for each model (and alignments):
>> MLTR_LBD  MmyB-like transcription regulator ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.19   6.7e+02      68     108 ..      42      82 ..      26      95 .. 0.81
   2 !  137.2   9.5   1.5e-43   5.5e-40       3     168 .]     101     265 ..      99     265 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.19
    MLTR_LBD  68 eevaralvarLraeaarrpddpalaalvaeLsaaspefarl 108
                 + ++ ++varL +  a +p  +  aal   L+ +++e a l
  KIR62167.1  42 AGISPEYVARLEQGRAGTPSAQVCAALACALRLSDDEEAHL 82 
                 56677899999999999999999999999999866666655 PP

  == domain 2  score: 137.2 bits;  conditional E-value: 1.5e-43
    MLTR_LBD   3 palrrlLdalepvPAlVldrrwdvlaaNraaraLlgdpaalpeperNllrlvfl..dpglrpliedweevaralvarLraeaarrpddpalaalvaeLs 99 
                  +l+r++d+l++vPA+V+d+ w +l +Nr+++a++gdpa+  +++rN+l   f   +p++r++ ++++ ++++lva+Lra+ ar+p+dp +aalv++++
  KIR62167.1 101 GSLHRVIDHLGDVPAAVYDAAWRLLHWNRLFAAVFGDPADASADDRNALIVQFEsrNPRVRQTDTERAYFEQSLVADLRATSARYPNDPDVAALVTRMA 199
                 689**************************************************9556677777788899****************************** PP

    MLTR_LBD 100 aaspefarlwarhdvaarrsgrkrlrhpevgeltldsetlgtpddptlelvvytaePgdesteaalrlL 168
                   +++f+rlwa + va ++s +k+ +hp+vg++ lds +l+t  ++++ lvv+t++P++++ e+ l++L
  KIR62167.1 200 G-NDRFRRLWALGAVALHESAHKTAVHPDVGPIPLDSNVLTTRNTDHR-LVVLTPRPDTTAREK-LDRL 265
                 *.*********************************************8.***************.9987 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   5.6     6e-19   2.1e-15       1      64 []       3      82 ..       3      82 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 6e-19
      HTH_31  1 aLGalLralRera................GLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerael 64
                +LGa Lra+Rer                 GL++ e+A ++g+s+ ++ rlEqGr g ps +v +ala al+l+++e a+l
  KIR62167.1  3 DLGAALRAWRERTdpdavglpnasprrvaGLRRGELATLAGISPEYVARLEQGRAGTPSAQVCAALACALRLSDDEEAHL 82
                69*************************************************************************99997 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.8e-10   6.4e-07       8      53 ..      31      77 ..      28      78 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.8e-10
                TTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  8 lglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvsld 53
                +gl + eLA ++G+s+ +++r+E G    Ps +++ +la aL +s d
  KIR62167.1 31 AGLRRGELATLAGISPEYVARLEQGrAGTPSAQVCAALACALRLSDD 77
                589999********************999*************99866 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.4e-05     0.086       4      44 ..     104     149 ..     102     174 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.4e-05
       PAS_8   4 ralfesspd.giavvdlgdrivdvNqaalellGys....adlkgel 44 
                   +++++ d + av+d+ +r++++N+ ++  +G +    ad++ +l
  KIR62167.1 104 HRVIDHLGDvPAAVYDAAWRLLHWNRLFAAVFGDPadasADDRNAL 149
                 5788999999999999889**************6644444444444 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00011      0.39       9      61 ..     116     167 ..     115     202 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
       PAS_7   9 svfDadlrLvawNrrylelldlpeelvqvgvpleellrynaergefgagdvea 61 
                 +v+Da+ rL+ wNr +  +++ p++   +  + + ++++ +++  +++ d+e 
  KIR62167.1 116 AVYDAAWRLLHWNRLFAAVFGDPADAS-ADDRNALIVQFESRNPRVRQTDTER 167
                 59*********************9987.5556667777777777777555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1835.12
//
Query:       KIR62168.1  [L=200]
Description: hypothetical protein TK50_27035 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-16   60.7  24.9    1.6e-16   60.4  24.9    1.1  1  DUF998    Protein of unknown function (DUF998)
  ------ inclusion threshold ------
      0.026   14.1   0.2      0.036   13.6   0.2    1.4  1  Frag1     Frag1/DRAM/Sfk1 family


Domain annotation for each model (and alignments):
>> DUF998  Protein of unknown function (DUF998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4  24.9   1.8e-20   1.6e-16       2     183 ..       2     192 ..       1     194 [. 0.82

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 1.8e-20
      DUF998   2 aaallalav..ilaaallrpgydplrhaiSeLgaeg..........gpggwlfnaglvllgllvlalavgllraargragragrllla.vaglglvlag 87 
                 a +++++ +  ++aaa+++p+y+ ++h+iS Lg +g          +p + ++n+gl l+gl++la+++ +l+     ++ra++++ a v ++g+vl+g
  KIR62168.1   2 ASGIIYFTGefVAAAAWTDPPYSYTHHFISNLGVHGpltafgqymySPLAPVMNTGLGLTGLAALAGVA-MLKG-LPGGRRAATVISAvVLAVGMVLVG 98 
                 556677777989******************************************************665.5564.33333333333333689******* PP

      DUF998  88 vfptdpgggspslsglvHglasavaflalavavllla....saarrrawallrlvggvallllvaalvwllaaaldgslllGlaerllvlaitawllal 182
                 +fp d g    +     Hg+ +++af+a  v v+ll+    +     + ++l +++g++ ll +++++ ++a   + + l+Gl+er +++ +++  +++
  KIR62168.1  99 LFPGDGG----TEGTDYHGIGAILAFVAGNVLVILLGrayrLLGMSSGLGRLLTMSGTFGLLSLVGFGTMVAS--GAGVLIGLFERGIIYPFLIGFILA 191
                 *****77....56679*********************766555556666777777777777777788888877..9***************99988887 PP

      DUF998 183 a 183
                 +
  KIR62168.1 192 G 192
                 7 PP

>> Frag1  Frag1/DRAM/Sfk1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2     4e-06     0.036      93     148 ..      82     140 ..      49     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4e-06
       Frag1  93 aalvlgligalglllvsif...staeyhsvHlvgavvffvfgflyvllqtalyykmgrh 148
                 a +++ ++ a+g++lv+ f     +e  ++H +ga+++fv+g + v+l    y+ +g +
  KIR62168.1  82 ATVISAVVLAVGMVLVGLFpgdGGTEGTDYHGIGAILAFVAGNVLVILLGRAYRLLGMS 140
                 678899999**********776778999*******************998888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1588.25
//
Query:       KIR62169.1  [L=446]
Description: glycosyl hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-35  121.4  19.4    2.6e-20   72.9   7.4    3.1  3  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    2.2e-13   50.6   5.2    4.8e-13   49.5   5.2    1.6  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    0.00087   19.0   0.7     0.0077   15.9   0.5    2.4  1  Esterase         Putative esterase
  ------ inclusion threshold ------
      0.013   15.0   0.1      0.028   13.9   0.1    1.5  1  Peptidase_S9     Prolyl oligopeptidase family
      0.019   14.6   0.6      0.048   13.3   0.0    1.8  2  Abhydrolase_1    alpha/beta hydrolase fold
      0.024   14.0   0.1      0.042   13.2   0.1    1.3  1  Rhomboid_SP      Rhomboid serine protease
       0.05   13.8   0.0        3.2    7.9   0.0    2.5  2  PAS_7            PAS fold


Domain annotation for each model (and alignments):
>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   7.4     1e-23   2.6e-20      13      89 .]      31     107 ..      23     107 .. 0.95
   2 !   54.1   2.4   7.8e-18     2e-14       1      62 [.     113     174 ..     113     189 .. 0.93
   3 ?   -0.9   0.0       1.1   2.7e+03      23      36 ..     235     248 ..     207     271 .. 0.72

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 1e-23
                      TEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  13 gyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                        y++ n++s+k+Ld  + +t++ga++ qwt +++++qqW+++d g+g+yr+++++sgkvLdvag+sta+G++v qw
       KIR62169.1  31 AWYVLLNRNSNKALDLYNLATNDGARITQWTRNNGNQQQWQFVDSGGGYYRLKSRHSGKVLDVAGWSTADGAAVNQW 107
                      469*******************************************99****************99**********9 PP

  == domain 2  score: 54.1 bits;  conditional E-value: 7.8e-18
                      CCGEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEE CS
  RicinB_lectin_2   1 anQqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgty 62 
                      anQq++l +++ gy+++ n++s+k+++v+++sta+ganv+q+++ ++anqqW+l++ ++gt 
       KIR62169.1 113 ANQQFRLADSDAGYVRLINRNSNKAVEVQNASTADGANVVQYADWNGANQQWQLVRVDGGTT 174
                      69*****87899******************************************99998864 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.1
                      SEEEECGCCTBCTT CS
  RicinB_lectin_2  23 gkvLdvaggstang 36 
                      g+++dv+ g+t++ 
       KIR62169.1 235 GTAIDVDTGQTVDR 248
                      88899999999852 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   5.2   1.9e-16   4.8e-13       2     127 .]      32     164 ..      31     171 .. 0.91

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 1.9e-16
                     EEEEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEE..TTSEEEETT..TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTT CS
  Ricin_B_lectin   2 sgeirnvasgkCLdvegeska.gapvglydChgskgkQlwtlt..kdgeirska.qselCldvs..staegakvvlakChkgkgnqrWefdkdgt 90 
                     ++ + n++s+k Ld  + +++ ga++++++ +++++ Q+w++   + g +r+k+ +s++ ldv   sta+ga v +++   + +nq++++ ++  
      KIR62169.1  32 WYVLLNRNSNKALDLYNLATNdGARITQWTRNNGNQ-QQWQFVdsGGGYYRLKSrHSGKVLDVAgwSTADGAAVNQWTDL-NAANQQFRLADSDA 124
                     667889**************9*************77.****996666899999899*********************977.888*****776666 PP

                     E...EEETTTSEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  91 q...irhkksgkCLdvkgasksne.klilkkcdsgsdsQkW 127
                     +   +++++s+k ++v++as++++ +++++  d + ++Q+W
      KIR62169.1 125 GyvrLINRNSNKAVEVQNASTADGaNVVQY-ADWNGANQQW 164
                     66899*******************888888.7899****** PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.5     3e-06    0.0077      96     149 ..     285     337 ..     201     396 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3e-06
                 HHHHTHHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCEEEEES-- CS
    Esterase  96 tfltqeLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFgsvssfSpi 149
                 tf+   +l+ +++ + +++++r  +G+S GG ++  la  +p+ F  v ++S +
  KIR62169.1 285 TFVD-NMLSRIEGALCVNTRQRFSIGFSYGGAMSFSLACSRPNIFRAVVVQSSP 337
                 5554.57899******************************************65 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.1e-05     0.028      61      96 ..     300     335 ..     273     347 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
                   --GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEES CS
  Peptidase_S9  61 vdserlaitGgSyGGyltgaalnqrpdlFkaavaev 96 
                   v++++ +  G SyGG ++  ++ +rp++F+a+v + 
    KIR62169.1 300 VNTRQRFSIGFSYGGAMSFSLACSRPNIFRAVVVQS 335
                   667777889***********************9886 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.56   1.4e+03     173     203 ..      77     107 ..      20     145 .. 0.70
   2 ?   13.3   0.0   1.9e-05     0.048      73     106 ..     303     336 ..     271     349 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.56
                    HHHHHCHHHHHHHHHHHHHHHHCCHHHHHHH CS
  Abhydrolase_1 173 sgsdnasslatgalksieqwpttdsaklllr 203
                    +g+++ +s   g ++++ +w+t d a++ ++
     KIR62169.1  77 GGYYRLKSRHSGKVLDVAGWSTADGAAVNQW 107
                    5666666666666666666666666665555 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.9e-05
                    SSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE CS
  Abhydrolase_1  73 dkltlvGhSmGGmialayaaeyperVkalvllga 106
                    ++   +G+S+GG++++ +a   p+  +a+v  ++
     KIR62169.1 303 RQRFSIGFSYGGAMSFSLACSRPNIFRAVVVQSS 336
                    55668*************************9988 PP

>> Rhomboid_SP  Rhomboid serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.7e-05     0.042      56     108 ..     349     405 ..     328     409 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
  Rhomboid_SP  56 pkshkglqrivdPlarGrafrlveevdglsvPqtPltPgvaslc....sftssrsgl 108
                  p +  g+  i d +a Gra+r    +++  +Pq+P  P++ sl+    +++  rsg+
   KIR62169.1 349 PVAYMGVHGIGDNIASGRALRDRFVANNGCTPQSPREPSAGSLThvvtTYSGCRSGY 405
                  566789999*********************************972222567777776 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0013       3.2      64     109 ..      67     112 ..      27     118 .. 0.85
   2 ?    3.7   0.0     0.026        66      69     106 ..     119     156 ..     111     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0013
       PAS_7  64 errlaaaragkphsfererpdgrvievrgnplpdgGfVttytDiTe 109
                 ++  + + +g  ++  ++r++g+v++v g  ++dg  V  +tD  +
  KIR62169.1  67 QQQWQFVDSGGGYYRLKSRHSGKVLDVAGWSTADGAAVNQWTDLNA 112
                 5555678889999999***************************865 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.026
       PAS_7  69 aaragkphsfererpdgrvievrgnplpdgGfVttytD 106
                  a +++ +    +r++++ +ev++  ++dg  V+ y D
  KIR62169.1 119 LADSDAGYVRLINRNSNKAVEVQNASTADGANVVQYAD 156
                 5566667777789999********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.51
# Mc/sec: 2616.09
//
Query:       KIR62170.1  [L=330]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-29  101.6   0.3    4.8e-28   98.6   0.4    2.0  2  Peripla_BP_3     Periplasmic binding protein-like domain
    7.8e-16   57.6   0.0      2e-15   56.3   0.0    1.8  1  LacI             Bacterial regulatory proteins, lacI family
    4.4e-09   36.2   0.0    5.6e-09   35.8   0.0    1.1  1  Peripla_BP_1     Periplasmic binding proteins and sugar bindi
    1.6e-05   24.6   0.0    0.00024   20.8   0.0    2.1  2  Peripla_BP_4     Periplasmic binding protein domain
    3.8e-05   23.6   0.0      8e-05   22.6   0.0    1.5  1  HTH_3            Helix-turn-helix
    0.00015   22.1   2.6      0.001   19.4   0.0    3.2  3  HTH_31           Helix-turn-helix domain
  ------ inclusion threshold ------
      0.037   13.9   0.0      0.076   12.9   0.0    1.5  1  YdaS_antitoxin   Putative antitoxin of bacterial toxin-antito
        0.1   12.6   0.0       0.25   11.4   0.0    1.6  1  Molybdopterin_N  Molybdopterin oxidoreductase N-terminal doma
       0.15   11.9   2.9       0.25   11.2   0.0    2.9  4  HTH_23           Homeodomain-like domain
       0.19   12.2   0.0       0.35   11.3   0.0    1.5  1  HTH_26           Cro/C1-type HTH DNA-binding domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.33   5.8e+02       8      64 ..      55     109 ..      48     137 .. 0.77
   2 !   98.6   0.4   2.7e-31   4.8e-28       1     166 []     165     324 ..     165     324 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.33
                   S--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH... CS
  Peripla_BP_3   8 Ghrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraal 64 
                   +  r+a++   +   +   ++++ g++++++e g+ l+++   +d +a a+++r+ l
    KIR62170.1  55 RSGRVAVVL--PGPADVVPTRLLNGAADVAHEFGYLLDVVGLEGDASARAERIRILL 109
                   556788888..5555678889999***********9999999999998888888755 PP

  == domain 2  score: 98.6 bits;  conditional E-value: 2.7e-31
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-.EEEEE-S-SS-SSHHHHH......HHHHHCC-SEEEEESSCCHHHHHHHHHCC CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglp.lnetvvaaddpaaaaaaraalll.qalklaalPtAviaasDelAlgvlqalre 95 
                   v++L++ Ghrr++ ++  g++   ++++r+  ++ ++++lgl+ +++++++++     ++++aa  + +++  +  +tAv+aa+D++A gv+q l+ 
    KIR62170.1 165 VRRLAADGHRRFVHVA--GSDLWASARNRRTVYETTIAQLGLTsCAVVQGDWTVR---SGWEAATTViPRC--G--ATAVLAANDRVAFGVIQGLQS 252
                   789*************..8888899999***************555555555555...5555555223777..3..3******************** PP

                   TT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHH.TT---S--EEE.E--EEE--GGG CS
  Peripla_BP_3  96 aglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldll.egekappeqvl.lppelveReSt 166
                    ++ vP+++sv+g dd+e+ ++++P l+tv+++ e+ Gr+a+  ll+ll  +e++  ++ + l  +lv+ReSt
    KIR62170.1 253 LHVDVPRQVSVVGWDDEEIGRFMRPTLSTVSIDRERQGREAMGRLLALLrGEEPTSLPTPSgL-SRLVLREST 324
                   ****************9999*****************************54444444555545.57*****98 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   1.1e-18     2e-15       2      46 .]       1      45 [.       1      45 [. 0.99

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 1.1e-18
                HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                +++VAr+AGVS +TVSr+L++++  + +t ++V++a+e lnY+Pn
  KIR62170.1  1 MHEVARAAGVSHQTVSRFLRGQGGLKPQTLQKVTQAIERLNYRPN 45
                89******************************************9 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   3.1e-12   5.6e-09       6     265 ..      61     305 ..      56     317 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3.1e-12
                   EEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHH.HHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-T..TTS-EE CS
  Peripla_BP_1   6 lvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaid.llkakgidgliiatsdtsfdditakaesgipvialedaidap..dgvPcv 98 
                   +vlp + +     l++g+   a+e+g+ + ++  ++++ +  ++i+ ll  + +dg++  t+ t + + +  a+  +pv+  ++  d+   +g+   
    KIR62170.1  61 VVLPGPADVVPTRLLNGAADVAHEFGYLLDVVGLEGDASARaERIRiLLHPENVDGILSFTPLTTGMAGVDVASFPVPVVVEGEYDDNMraQGL--- 154
                   56666666666778999999999999988887777777776677772556789*****999999977777777767777776666444433444... PP

                   EE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-.TT-SEEE-SSHHHHHH CS
  Peripla_BP_1  99 ipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh.PeidaivaindeaalG 194
                   + +d    +e  + L a gh+r  + ++g +    a++r++ ++ ++a+ Gl   +  v +g+ +++ + ea++ ++ +   +  a+ a nd++a+G
    KIR62170.1 155 L-ADASPMAEIVRRLAADGHRR-FVHVAGSDLWASARNRRTVYETTIAQLGL--TSCAVVQGDWTVRSGWEAATTVIPRCgAT--AVLAANDRVAFG 245
                   3.5555567899**********.566666666667778888***********..***********************998788..************ PP

                   HHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-SEEEE CS
  Peripla_BP_1 195 avlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkinkereh 265
                    +++l+    +  + +v     svv+ d     + + +  + l + ++ re +Gr+a  ++l      +e+
    KIR62170.1 246 VIQGLQSLH-VDVPRQV-----SVVGWDDE---EIGRFMRPTLSTVSIDRERQGREAMGRLLALL--RGEE 305
                   *****9999.9******.....99999987...899********************999988755..4444 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.084   1.5e+02     119     190 ..      51     120 ..       3     134 .. 0.72
   2 !   20.8   0.0   1.3e-07   0.00024     124     258 .]     174     305 ..     145     305 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.084
                   CTTH..EEEEEETSCCCHHHHHHHHHHHHHHHHH-T.TCEECCEEESTTTCHHHHHHHHHHHHHTTTECEEEES CS
  Peripla_BP_4 119 lggk.kgkvvilaGspgdpnaeeriegfrkvlkeyp.gikivaevaganwdaekaqqalealltanpldgilaa 190
                   + ++ +g v+++   p d   +  ++g+ +v  e++  + +v+     + da+   +++  ll ++++dgil++
    KIR62170.1  51 MRTRrSGRVAVVLPGPADVVPTRLLNGAADVAHEFGyLLDVVG----LEGDASARAERIRILLHPENVDGILSF 120
                   5555567777777777777777777777777777443444444....567888888888888886568888875 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1.3e-07
                   EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTTECEEEESSCCHHHCHHHHHHHTTT.TSTEEEEEES-H CS
  Peripla_BP_4 124 gkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltanpldgilaandgmaegalealeaagl.agkvvvtgqDat 219
                     +v +aGs   + a+ r    + ++++  g++ +a+v+g +w+   + +a+++++ +    ++laand  a+g+++ l++  +  +++ v  ++ +
    KIR62170.1 174 RRFVHVAGSDLWASARNRRTVYETTIAQ-LGLTSCAVVQG-DWTVRSGWEAATTVIPRCGATAVLAANDRVAFGVIQGLQSLHVdVPRQ-VSVVGWD 267
                   5678888999999999999999999988.79999996566.****************66689*******************99853333.5555556 PP

                   HHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT-- CS
  Peripla_BP_4 220 pealeaikdGtidatvaqdpyelgyaavelavallkGkk 258
                   +e + +    t++ tv+ d   +g+ a+  ++all+G++
    KIR62170.1 268 DEEIGRFMRPTLS-TVSIDRERQGREAMGRLLALLRGEE 305
                   7888888888988.99999999******99999999986 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   4.4e-08     8e-05      13      47 ..       2      36 ..       1      39 [. 0.93

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4.4e-08
                HHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHH CS
       HTH_3 13 eeLAeklGvsrstisriEnGernPsletlkklaka 47
                 e+A+++Gvs +t+sr  +G+    ++tl+k+ +a
  KIR62170.1  2 HEVARAAGVSHQTVSRFLRGQGGLKPQTLQKVTQA 36
                59*****************************9776 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.7e-07     0.001      19      53 ..       3      36 ..       1      48 [. 0.92
   2 ?   -1.4   0.1       1.7   3.1e+03      32      60 ..      72      98 ..      72     102 .. 0.76
   3 ?    0.7   0.1      0.37   6.7e+02       2      23 ..     294     323 ..     293     328 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5.7e-07
      HTH_31 19 evAerlgvsestlsrlEqGrrgrpspavlealara 53
                evA+++gvs  t+sr  +G+ g  +p++l ++ +a
  KIR62170.1  3 EVARAAGVSHQTVSRFLRGQGG-LKPQTLQKVTQA 36
                8********************9.*99999998887 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.7
      HTH_31 32 srlEqGrrgrpspavlealaralgldpae 60
                +rl +G+ + +  +    l++++gl+++ 
  KIR62170.1 72 TRLLNGAAD-V-AHEFGYLLDVVGLEGDA 98
                688888886.6.78888899999998775 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.37
      HTH_31   2 LGalLralRera........GLsqeevAer 23 
                 +G+lL+ lR ++        GLs+  + e 
  KIR62170.1 294 MGRLLALLRGEEptslptpsGLSRLVLRES 323
                 799******999999999999998766655 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.2e-05     0.076      13      47 ..       3      37 ..       1      46 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
  YdaS_antitoxin 13 aLAealgvsqqaVsqWlkgkkqvpaervpeIekat 47
                    ++A+a gvs q+Vs++l+g++++ ++   ++ +a+
      KIR62170.1  3 EVARAAGVSHQTVSRFLRGQGGLKPQTLQKVTQAI 37
                    68*****************9999888877777765 PP

>> Molybdopterin_N  Molybdopterin oxidoreductase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014      0.25      14      41 .]      56      83 ..      51      83 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
  Molybdopterin_N 14 dGkivgvrPfegDpdPspllegvpdavy 41
                      G++  v P ++D  P+ ll+g +d  +
       KIR62170.1 56 SGRVAVVLPGPADVVPTRLLNGAADVAH 83
                     69***********************876 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00014      0.25      21      46 ..       2      25 ..       1      28 [. 0.86
   2 ?   -2.9   0.0       3.8   6.7e+03       6      13 ..     103     110 ..     101     116 .. 0.79
   3 ?   -2.5   0.3       2.9   5.1e+03      30      35 ..     190     195 ..     189     198 .. 0.85
   4 ?   -2.1   0.0         2   3.7e+03      17      35 ..     265     283 ..     259     289 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
      HTH_23 21 reIAreLgvsrrTvyrwlkryreeGl 46
                +e+Ar+ gvs++Tv+r l+   ++Gl
  KIR62170.1  2 HEVARAAGVSHQTVSRFLRG--QGGL 25
                69**************9987..6666 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.8
      HTH_23   6 eRlrilll 13 
                 eR+rill+
  KIR62170.1 103 ERIRILLH 110
                 89999987 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.9
      HTH_23  30 srrTvy 35 
                 +rrTvy
  KIR62170.1 190 NRRTVY 195
                 79***9 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 2
      HTH_23  17 GlsvreIAreLgvsrrTvy 35 
                 G+  +eI r +  + +Tv+
  KIR62170.1 265 GWDDEEIGRFMRPTLSTVS 283
                 8999999998877777775 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0002      0.35      15      49 ..       3      36 ..       1      38 [. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
      HTH_26 15 eLargtgisaatlsrlvkgkpervsldtLdkiCda 49
                e+ar++g+s +t+sr++ g+   ++ +tL+k+ +a
  KIR62170.1  3 EVARAAGVSHQTVSRFLRGQ-GGLKPQTLQKVTQA 36
                79******************.6*******998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2368.72
//
Query:       KIR62171.1  [L=238]
Description: hypothetical protein TK50_27105 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-07   31.6   0.5    2.2e-07   30.5   0.5    1.5  1  Cupin_2   Cupin domain
    0.00012   21.7   0.1    0.00018   21.1   0.1    1.2  1  Cupin_1   Cupin


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.5   2.4e-11   2.2e-07      10      68 ..      25      87 ..      20      88 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 2.4e-11
                EEEEECSSSEEEEEEEEESEEEEE.EC..TE.EEEEETTEEEEE-TT-EEEEEE-SSS-EEEE CS
     Cupin_2 10 sapshrHpgedeffyVleGegelt.vd..ge.eveleaGdsvyfpagtpHrfrNtgdeparll 68
                 + +h H+  +e ++V+ G+gel+ +   g  +++l +G +v f +gt Hr +N gd  ++++
  KIR62171.1 25 GGSPHLHTACTEAYVVVGGRGELHtLTpaGPgTTPLLPGTVVWFTPGTVHRAVNLGDLRVVVI 87
                4679********************77666548************************6665554 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1     2e-08   0.00018      47     112 ..      27      88 ..      26     115 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2e-08
                 EEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSSSEEEEEE CS
     Cupin_1  47 lPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgdepavaivv 112
                 +Ph h+  te  +v+ G+g + +++p+      +  l +G+v+++ +g vh ++n gd  +v+i  
  KIR62171.1  27 SPHLHTACTEAYVVVGGRGELHTLTPAG---PGTTPLLPGTVVWFTPGTVHRAVNLGDLRVVVI-M 88 
                 6**************************8...78888********************94444443.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1683.68
//
Query:       KIR62172.1  [L=323]
Description: 2-hydroxyacid dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-46  156.0   0.0    8.6e-46  155.5   0.0    1.2  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
    1.2e-06   28.2   0.0      2e-06   27.5   0.0    1.3  1  2-Hacid_dh    D-isomer specific 2-hydroxyacid dehydrogenase, 


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.5   0.0   9.6e-50   8.6e-46       3     178 .]     114     283 ..     112     283 .. 0.90

  Alignments for each domain:
  == domain 1  score: 155.5 bits;  conditional E-value: 9.6e-50
                   HHHHHHTTHHHHHHHHHTTCC.HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE- CS
  2-Hacid_dh_C   3 lllallrrlaeadeevregew.ksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslh 98 
                   ++l + + + ++++++++ +  +  +  ++    g++vGi+G+ r G++v+++l+  ++++  yd++ +        gv  v leella+sDivslh
    KIR62172.1 114 MVLLAGKGVFALHDSYHAARTfTVAQIAPSVGNFGRRVGIVGASRTGRQVIRLLRRHDLRLCLYDPYAT------VSGVPNVPLEELLATSDIVSLH 204
                   55666666666666666555545666677778899********************************66......4688899*************** PP

                   S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  99 lpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   +p+tpet+hl+++++la++++ga+liNtaRG lvd+ aL++ L  g+i+ a+lDv+++eplp+dspl++lpnv+ltPH+a
    KIR62172.1 205 APATPETHHLLDRRRLALLRDGAVLINTARGVLVDTPALVDELTTGRIS-AVLDVTDPEPLPADSPLFDLPNVFLTPHVA 283
                   ************************************************9.99**************************98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   2.3e-10     2e-06      29     133 ..      37     314 ..      17     315 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2.3e-10
                 SHHHCHHHHTTESEEEE-TTS.-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH........................ CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................ RF
  2-Hacid_dh  29 lteellekakdadalivrsnt.kvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt........................ 102
                 ++   +++++d ++li+     ++++++l+a+p+L+ + +a+  +     d   erGi+V+++ ++++  vAE+t                        
  KIR62172.1  37 DDPRAADRLRDLEVLITGWGCpPLDDAFLAAAPRLRAVLHAAGSIKPHVTDGVWERGITVCSAAEANATPVAEYTtamvllagkgvfalhdsyhaartf 135
                 45566889999999998665559**********************9999************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  KIR62172.1 136 tvaqiapsvgnfgrrvgivgasrtgrqvirllrrhdlrlclydpyatvsgvpnvpleellatsdivslhapatpethhlldrrrlallrdgavlintar 234
                 *************************************************************************************************** PP

                 .................................................T-BHHHHHHHHHHHHHHHHHHHTTCCGTTBC CS
                 .................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 .................................................aaTeeaqeniaeeaaenlvaflkgespanav 133
                                                                  ++  + + +++ ++a++l++ l+g+++++ v
  KIR62172.1 235 gvlvdtpalvdelttgrisavldvtdpeplpadsplfdlpnvfltphvaGSHGNELARMGSHIADELERLLTGRPLRYQV 314
                 ************************************************9999999******************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2543.56
//
Query:       KIR62173.1  [L=274]
Description: hypothetical protein TK50_27130 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-16   58.6  14.4    6.6e-16   58.6  14.4    1.6  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6  14.4   3.7e-20   6.6e-16       4     183 ..      79     267 ..      74     269 .. 0.87

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 3.7e-20
  BPD_transp_1   4 lGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrk 100
                   l++++a +r +++++ l+ ++++++ +   ++ i l+    + ++l+    + +++l   ++p+ ++i+ a+++++p++ +e a+++Ga++ +if++
    KIR62173.1  79 LAWVIA-RRLRPVSRPLTAFTYLPMLFSGGLVPIYLL----VTQVLHLRDSWFAVILPHLMMPFLVFITVAFFQQIPTEIMESAHVDGAGELRIFFR 170
                   667777.777888888888888777444444333333....348888888889******************************************** PP

  BPD_transp_1 101 vvlPnalppiitglilafggllggavlleflgswpG.......lgtllleailgydyseis.......nggvlalviavlllnlvadilqrlldprv 183
                   +vlP+a+p ++  +++ ++  +++ +++ +++s+p        l++l+ +++++  ++ +s          ++ +v+ + +++l++ + qr++ + +
    KIR62173.1 171 IVLPLAKPILAVIALFYAVTYWNEWFMAILFISDPDkyplqllLQNLIANVTNATVLPGGSapvvpvyQLRLALTVVTIGPIILAYPFAQRYFVKGL 267
                   ***********************************99999999999999999999999999*****99999999999999************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1962.30
//
Query:       KIR62174.1  [L=303]
Description: hypothetical protein TK50_27160 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-22   79.1   0.0    6.3e-22   78.2   0.0    1.4  1  Glyco_hydro_43  Glycosyl hydrolases family 43


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   3.5e-26   6.3e-22      29     223 ..      39     226 ..      35     246 .. 0.87

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 3.5e-26
                     BTEESEEEEEEESSSSSCEEEEECEESTTTCST.TTEECTEEEEEE.EETTEEEEEEEEEETTCCCSEEEEEEESSTTS--EECEESSCSTSSEC CS
  Glyco_hydro_43  29 fewfpglrifhSkdLvnWkqvgrvlerrsqlsm.kgknasWAPeis.khdgkyylyytatkkgeakqgifvvtadspeGpwsdpiklktsgssgi 121
                      + f g+ +++S dL +W+ +g++l   +     +       P++  ++dg+y ++   +  g  + +++ ++ad+peGp+  ++ +   g+++ 
      KIR62174.1  39 GPTFGGVACYSSPDLATWTYHGHALSPDPAIPDlAPGRIVERPKVLpRADGTYVMLLHLDYPGYRDARVGWAVADRPEGPYRYLHGVRPLGNESR 133
                     56799********************988876531444433556654599*********9999*************************766***** PP

                     EEEEEEETTSEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEEEEEEEEECGCCTCTTBBEEEEEEEEETTEEEEEEEESTSSTTEEEEEEEESST CS
  Glyco_hydro_43 122 DpslfedddGkkYlvwgqwdkreghseiylaeldddtlklkgektklikagtelkglkvtEGPhlykrdgyyYLlaaeggtgseyavvvarsksl 216
                     D ++f+dddG++Yl+ ++ +++     + l +l++d l++++ +  ++ + +   g++ +E P ++++dg yYL+ +     s+ + ++a+++sl
      KIR62174.1 134 DIGVFTDDDGTSYLMSEDRPHG-----LHLYRLSPDLLTVDELV-STTLTPA---GTHGYESPTMVRHDGLYYLFGSDLTGWSTNDNKYATATSL 219
                     ******************7776.....*****************.5555555...6*********************7777778999******** PP

                     TSGGEEE CS
  Glyco_hydro_43 217 lgPyewk 223
                      gP+++ 
      KIR62174.1 220 SGPWSDW 226
                     ****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2218.68
//
Query:       KIR62175.1  [L=507]
Description: hypothetical protein TK50_27165 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-92  308.9   0.0    4.3e-92  308.5   0.0    1.2  1  Glyco_hydro_43  Glycosyl hydrolases family 43
    7.1e-36  123.8   0.0      1e-35  123.3   0.0    1.2  1  GH43_C2         Beta xylosidase C-terminal Concanavalin A-lik


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.5   0.0   4.8e-96   4.3e-92       1     288 []       6     296 ..       6     296 .. 0.95

  Alignments for each domain:
  == domain 1  score: 308.5 bits;  conditional E-value: 4.8e-96
                     EESESBCSSEESEEEEEETTCEEEEEEEBTEESEEEEEEESSSSSCEEEEECEESTTTCSTTTEECT...EEEEEEEETTEEEEEEE...EEETT CS
  Glyco_hydro_43   1 yrnPvlsgfypDpsilrvgedyYlvtstfewfpglrifhSkdLvnWkqvgrvlerrsqlsmkgknas...WAPeiskhdgkyylyyt...atkkg 89 
                     + nPv++gf+pDps++rvg+ y ++tstfewfpg+ +++S+dL +W+++g +l+r++ql+++g ++s   WAP++s+hdg y+l++t   + +++
      KIR62175.1   6 IHNPVIPGFHPDPSAIRVGSRYLIATSTFEWFPGVALHSSTDLRTWQAIGGALDRPEQLDLRGVPDSggiWAPTLSYHDGLYWLVFTvvrTMTGA 100
                     57*************************************************************************************54333333 PP

                     CCCSE...EEEEEESSTTS--EECEESSCSTSSECEEEEEEETTSEEEEEEEEEHCC...CSEEEEEEEEEETTTTEEEEEEEEEEECGCCTCTT CS
  Glyco_hydro_43  90 eakqg...ifvvtadspeGpwsdpiklktsgssgiDpslfedddGkkYlvwgqwdkr...eghseiylaeldddtlklkgektklikagtelkgl 178
                         +   +++vta++p+Gpwsdp++l   +ssg+Dpslf+  dG++Ylv+ +wd+r    ++++++l+e+d d   l+ge+ ++i+a++     
      KIR62175.1 101 Y---KdldNHLVTATDPAGPWSDPVYL---NSSGFDPSLFHASDGRRYLVNVNWDHRadrFSFGGVLLQEYDHDRRGLVGEP-EVIFASD----- 183
                     3...3456*******************...***************************998899*******************.9999999..... PP

                     BBEEEEEEEEETTEEEEEEEESTSSTTEEEEEEEESSTTSGGEEECTCCSEE.TBTTSTSEEEEEEEEEE-TTSSEEEEEEEESC...CTTCCGT CS
  Glyco_hydro_43 179 kvtEGPhlykrdgyyYLlaaeggtgseyavvvarsksllgPyewkkknpiltsrspeepiqgpGHaslvetpdgewyivyhagrp...egrglyt 270
                     +++EG hl++rdg++YL+ aeggtg ++ + +ars++l+gPye+++++ +++  +p+ piq++GH++l++tpdge yiv++++rp    ++++++
      KIR62175.1 184 ELMEGSHLFERDGWFYLILAEGGTGFNHGIRLARSRELHGPYETDPQPLLTSRDDPRLPIQKAGHGQLITTPDGEHYIVHLGSRPvagATEPRSP 278
                     9********************************************876666666*********************************999***** PP

                     TSSEEEEEEEEEETTSEE CS
  Glyco_hydro_43 271 lgRetllqrvewkaDGwp 288
                     lgRet+lqrv+w+aDGw+
      KIR62175.1 279 LGRETFLQRVRWDADGWL 296
                     *****************5 PP

>> GH43_C2  Beta xylosidase C-terminal Concanavalin A-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.0   1.1e-39     1e-35      10     202 .]     327     505 ..     322     505 .. 0.85

  Alignments for each domain:
  == domain 1  score: 123.3 bits;  conditional E-value: 1.1e-39
     GH43_C2  10 glqWqwlrnPkdedwyslterpgyLrLkgreslsskeapsllarRqqafsftattklefepekegeeAGLvvyqneyhyyslevtkdekgkrvlrlvka 108
                 g++W++lr P +     l +rpg+LrL+g+esl+s++++s+larR+++ ++ta++ +e +p+++ e+AGLvvy+n++ y++l+vt++e  +rv+ ++++
  KIR62175.1 327 GPEWVSLRGPVAA---DLDSRPGWLRLRGGESLDSRFQQSMLARRLTSLHCTAEVTVEADPRHFTEMAGLVVYYNTTGYHYLAVTHHEALGRVVGVISK 422
                 799********55...5688*******************************************************************999999999997 PP

     GH43_C2 109 dngeakeelkeekvplqtevkevyLrleveedkakfsysydgkeweeigeeldgtllsdefa.eggFtGafvGlfatgngkessgyAdFdwfeye 202
                         ++++  p++       Lrl++e d+++  +s   ++ +  ++  d   lsde+  + +FtG+++G++ ++    ++  AdF +fe++
  KIR62175.1 423 SPAG---IVEHRWHPADP----GPLRLRAEFDQLRLVLSA--GDGHRWEA--DLDALSDEIGpPLRFTGTMIGVCVQDL-ARRRFTADFTHFEFR 505
                 6655...34456666666....457777777555555555..55555554..4568******999**************.************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3646.20
//
Query:       KIR62176.1  [L=267]
Description: hypothetical protein TK50_27195 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-19   68.3  14.9    6.7e-19   68.3  14.9    2.4  2  BPD_transp_1   Binding-protein-dependent transport system inn
  ------ inclusion threshold ------
      0.022   15.1   1.6      0.022   15.1   1.6    2.0  2  DUF3566        Transmembrane domain of unknown function (DUF3
       0.23   11.6   7.8        0.6   10.2   1.9    2.9  2  Col_cuticle_N  Nematode cuticle collagen N-terminal domain
        2.1    8.6   3.4        4.1    7.7   0.0    2.2  2  Glycophorin_A  Glycophorin A


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   7.8      0.71   3.2e+03      32      60 ..      11      69 ..       1      87 [. 0.62
   2 !   68.3  14.9   1.5e-22   6.7e-19      10     183 ..      87     260 ..      79     262 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.71
  BPD_transp_1 32 sfvlaillvlvf.............................vilsilghlilp.viill 60
                  ++v+a++++++f                             + ++++g+++l  vii++
    KIR62176.1 11 ILVIAFPVLYAFlnsfrsyaditrdpmglptsfeftnylqlFQQTDFGQAVLNtVIITG 69
                  45555556656677777777788888888888888877777777777777777333333 PP

  == domain 2  score: 68.3 bits;  conditional E-value: 1.5e-22
  BPD_transp_1  10 lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilg.hlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlP 104
                    + +++ +++l+ ++iv+l++P+ v +i+lv   + ++++g ++ l  vi++ l +aap+ +l++ ++++ +p + +eaa ++Ga+r ++f+ +v+P
    KIR62176.1  87 ERLGGRSSRMLYLFFIVGLMIPFQVRMIPLV---KGMNDVGlYGTLTsVILVHLGTAAPFGILLYCSFIKGVPIEVEEAAQIDGAGRLRTFWSIVFP 180
                   57899999*****************999999...677777765666659999999****************************************** PP

  BPD_transp_1 105 nalppiitglilafggllggavlleflgswpGlgtllleailgydyseis...nggvlalviavlllnlvadilqrlldprv 183
                   ++lp++ +++i+ + ++++++++++ ++ +   +  ++++ +++++ + s     ++  +++a+++ ++++ ++qr++ + +
    KIR62176.1 181 MLLPVTSAFAIIESLAFWNEFFIPLVFLDS--TSAGTINVAINRMVGLLSsrwELIYTGAILALIPSMVIFAAFQRYFIKGI 260
                   ****************************66..67779999999999999999878888999999999**********99877 PP

>> DUF3566  Transmembrane domain of unknown function (DUF3566)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   1.6     5e-06     0.022      23      99 ..       4      83 ..       1      85 [. 0.85
   2 ?   -2.4   0.1       1.4   6.1e+03      42      56 ..     120     134 ..      95     153 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5e-06
     DUF3566 23 lsvalfivlvvavavlylvldalgvfdkvnslvkdlvgee...ssldleevlslgrvlslaalvgvvnvvlltalatlaa 99
                ++v ++++lv+a+ vly++l+++  + ++++    l ++    + l+l +  ++g+ +  ++++   +v+ll +l ++aa
  KIR62176.1  4 MAVLVILILVIAFPVLYAFLNSFRSYADITRDPMGLPTSFeftNYLQLFQQTDFGQAVLNTVIITGASVLLLLVLVPMAA 83
                678888999******************99987776665554557788889999**********************99988 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
     DUF3566  42 ldalgvfdkvnslvk 56 
                 ++ +g++ +++s++ 
  KIR62176.1 120 MNDVGLYGTLTSVIL 134
                 444444444444333 PP

>> Col_cuticle_N  Nematode cuticle collagen N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.9   0.00013       0.6       5      31 ..       3      29 ..       1      32 [. 0.90
   2 ?    3.5   0.4     0.016        73       4      21 ..      65      82 ..      64      89 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00013
  Col_cuticle_N  5 alStvailsslitlpsiyndiqsfqse 31
                   + ++++il+++i++p++y  ++sf+s 
     KIR62176.1  3 SMAVLVILILVIAFPVLYAFLNSFRSY 29
                   57899*******************996 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.016
  Col_cuticle_N  4 valStvailsslitlpsi 21
                   v++ + ++l +l+ +p+ 
     KIR62176.1 65 VIITGASVLLLLVLVPMA 82
                   78999***********96 PP

>> Glycophorin_A  Glycophorin A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   2.2      0.29   1.3e+03      66      80 ..       2      16 ..       1      20 [. 0.87
   2 ?    7.7   0.0   0.00092       4.1      52      90 ..      54      94 ..      40      97 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.29
                   HHHHHHHHHHHHHHH CS
  Glycophorin_A 66 gvmAgvigtillisY 80
                   + mA+++  il+i++
     KIR62176.1  2 ASMAVLVILILVIAF 16
                   67***********98 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00092
                   SSSSS-TTHHHHHHHHHHHHHHHHH..HHHHHHHTHSXXXX CS
  Glycophorin_A 52 vhdFselvitliifgvmAgvigtil..lisYlirRliKKss 90
                   + dF ++v+  +i++   ++++ +l  + +Y i Rl  +ss
     KIR62176.1 54 QTDFGQAVLNTVIITGASVLLLLVLvpMAAYGIERLGGRSS 94
                   679******999998878877777744589*****987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 1734.71
//
Query:       KIR62177.1  [L=257]
Description: transposase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-16   60.5   0.0    1.8e-16   60.2   0.0    1.1  1  DDE_Tnp_4     DDE superfamily endonuclease
    4.7e-15   55.0   0.0    9.6e-15   54.1   0.0    1.5  1  HTH_Tnp_4     Helix-turn-helix of DDE superfamily endonucleas
    3.7e-11   43.1   0.3    5.6e-11   42.5   0.3    1.3  1  DDE_Tnp_1     Transposase DDE domain
     0.0081   16.2   0.1       0.03   14.4   0.0    1.9  2  SpoIIID       Stage III sporulation protein D
  ------ inclusion threshold ------
       0.06   13.1   0.0       0.46   10.3   0.0    2.2  2  HTH_38        Helix-turn-helix domain
      0.088   13.4   0.1       0.21   12.1   0.1    1.6  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0     6e-20   1.8e-16      23     158 .]     123     252 ..     107     252 .. 0.89

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 6e-20
   DDE_Tnp_4  23 nykkkntlkvlivvdpngkiif.vskgypGsvsDkeilensgllkalkeavkpgdvilaDkgFklsekllvpykk.kkkkqlseeevefnraiasarih 119
                 +++ +++ ++++++d+  + ++ + ++ pG   D+ +++ sg+ ++l     +g  ++aD ++++++++++py+k +++++l   ++  n+++  +r  
  KIR62177.1 123 SKNYRYSTNLQVAIDAHTRLVVaLGDPQPGNRNDTIAYRTSGIDQKL-----AGRPVMADGAYRGNPEVIIPYRKpTDGTELPDWKKDLNKHHRTIRAQ 216
                 566689***********9999889**********************5.....59*********************99********************** PP

   DDE_Tnp_4 120 vErvigrlkgrfrilrsrlriklvekidkivkvccvLhN 158
                 vE++++r+k +f+ilr  +r    +++ ++ + ++ LhN
  KIR62177.1 217 VEHALARMK-TFKILRD-YRRA-ASTLTDTASGIAHLHN 252
                 *********.*****75.5666.7999999999999998 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   3.2e-18   9.6e-15       1      49 [.      45      93 ..      45      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 3.2e-18
   HTH_Tnp_4  1 rkLsledqllltLvyLRlnltyqdLayrFgvsestvsrifhkwvdlLae 49
                ++L+l d++ll+  y+R+nlt+++++ +Fgvs s ++r++ ++ +lLa 
  KIR62177.1 45 WSLDLADRVLLVAAYWRTNLTMRQIGPLFGVSHSAAHRVIDTLGPLLAL 93
                689********************************************96 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.3   1.9e-14   5.6e-11       4     196 ..     102     235 ..      99     253 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 1.9e-14
   DDE_Tnp_1   4 revlivDattvrvpgtkedarwgyk.ggkykygyklhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr.kgklvlaDaGYa.saelldtleek 98 
                 +++ ivD+t+v++++++      +   + y+y  +l++a+d++++l++++    pgn++d+ ++++   ++++   g+ v aD++Y  ++e++   +  
  KIR62177.1 102 EQIAIVDGTLVPTRDHR-----LAApSKNYRYSTNLQVAIDAHTRLVVALGDPqPGNRNDTIAYRT--SGIDQKlAGRPVMADGAYRgNPEVIIPYR-- 191
                 6899*************.....5553777*********************9966************..7787778***********97799999999.. PP

   DDE_Tnp_1  99 gvdyiirlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrlryr 196
                                          + +   +   ++k  +++++                            ++R+q+E+  +++k+ f+++r + r
  KIR62177.1 192 -------------------------KPTDGTELPDWKKDLNKHHR----------------------------TIRAQVEHALARMKT-FKILRDYRR 235
                 .........................78888888888888888888............................***************.***998766 PP

>> SpoIIID  Stage III sporulation protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     1e-05      0.03       5      39 ..      50      83 ..      47     104 .. 0.88
   2 ?   -1.7   0.1       1.1   3.3e+03      61      70 ..     206     215 ..     201     232 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
     SpoIIID  5 eeRvleiakyiveskatvRkaakvfgvskstvhkD 39
                 +Rvl +a+y  +++ t+R++   fgvs s  h+ 
  KIR62177.1 50 ADRVLLVAAY-WRTNLTMRQIGPLFGVSHSAAHRV 83
                68*******9.5899******************85 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.1
     SpoIIID  61 knkaeRhiRG 70 
                  nk +R iR 
  KIR62177.1 206 LNKHHRTIRA 215
                 3444444442 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00015      0.46       5      35 ..      47      78 ..      43      84 .. 0.79
   2 ?   -0.2   0.0      0.28   8.5e+02      30      38 ..     206     214 ..     204     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
      HTH_38  5 LsleeReeIerl.laeGlslreIArrLgrsps 35
                L l++R+ + +  +  +l++r+I+ + g+s+s
  KIR62177.1 47 LDLADRVLLVAAyWRTNLTMRQIGPLFGVSHS 78
                777888777665379****************9 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.28
      HTH_38  30 LgrspsTIs 38 
                 L++++ TI 
  KIR62177.1 206 LNKHHRTIR 214
                 9******95 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   7.1e-05      0.21      11      46 ..      49      84 ..      43      88 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.1e-05
  LZ_Tnp_IS481 11 vlGrvllvrrvvedrrtvaqvarelGvslrtaykwl 46
                     rvllv    + + t++q+    Gvs  +a++ +
    KIR62177.1 49 LADRVLLVAAYWRTNLTMRQIGPLFGVSHSAAHRVI 84
                  567******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1830.27
//
Query:       KIR62178.1  [L=122]
Description: MerR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-18   64.7   0.5    8.5e-18   64.2   0.1    1.4  2  MerR_1         MerR HTH family regulatory protein
      1e-14   54.0   5.3    1.5e-14   53.5   3.2    2.1  2  MerR           MerR family regulatory protein
    1.1e-06   29.1   1.3    1.6e-06   28.5   1.3    1.3  1  MerR-DNA-bind  MerR, DNA binding
  ------ inclusion threshold ------
      0.032   14.4   0.3        0.2   11.8   0.3    2.2  2  HTH_17         Helix-turn-helix domain
       0.15   12.2   0.1       0.15   12.2   0.1    2.6  4  AbiEi_4        Transcriptional regulator, AbiEi antitoxin


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.1   2.4e-21   8.5e-18       1      66 [.       1      66 [.       1      68 [. 0.97
   2 ?   -3.1   0.0       2.5   8.9e+03      40      49 ..      92     101 ..      82     106 .. 0.61

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 2.4e-21
                EEHHHHHHHHTS-HHHHHHHHHHTT-S-EE-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XX CS
      MerR_1  1 ysigevakilgvtthtlrywekegllkpkrteggrryYtdedierLklikyLlkrGltlkgikkll 66
                ++ige+a ++gv+++ lry+e++gll   r+ +g+r+Y + ++er++li++L ++Gl+ + i +ll
  KIR62178.1  1 MRIGELAARTGVSVRSLRYYEEQGLLTSLRSPRGHRRYLEGQVERIRLIQRLFSAGLSSRTIVDLL 66
                89**********************************************************999887 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.5
                 HHHHHHHHHH CS
      MerR_1  40 dedierLkli 49 
                 d++i++L + 
  KIR62178.1  92 DQHIDELVRT 101
                 5667666555 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   3.2     4e-18   1.5e-14       1      38 []       2      38 ..       2      38 .. 0.99
   2 ?   -0.2   0.0      0.24   8.6e+02       9      16 ..      55      62 ..      44      63 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 4e-18
                EHHHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSSEEE CS
        MerR  1 tIgevAeltGvsprtLRyYEreGLipppeRtegGyRlY 38
                +Ige+A +tGvs+r LRyYE++GL+ ++ R++ G+R+Y
  KIR62178.1  2 RIGELAARTGVSVRSLRYYEEQGLL-TSLRSPRGHRRY 38
                7************************.***********9 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.24
                HTTTHHHH CS
        MerR  9 tGvsprtL 16
                +G+s+rt+
  KIR62178.1 55 AGLSSRTI 62
                49999998 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   1.3   4.4e-10   1.6e-06       1      65 []      43     108 ..      43     108 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 4.4e-10
                    HHHHHHHHHHHHTT--HHHHHHHHHHHHS.TTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind   1 leRLkfIrrarrlGFsLdeIrelLalydd.rappcqdvrallarklaeleeriaeLqalraeLaal 65 
                    +eR+++I r+ ++G+s   I +lL   ++ +a++++++++   + +++l+++i+eL ++ra L++l
     KIR62178.1  43 VERIRLIQRLFSAGLSSRTIVDLLPCVESpSADTSEAALERMGQERDRLDQHIDELVRTRAVLDDL 108
                    79**********************7777769********************************986 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   5.6e-05       0.2       2      45 ..       1      45 [.       1      47 [. 0.87
   2 ?   -0.8   0.0       0.5   1.8e+03      20      28 ..     112     120 ..     110     122 .] 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.6e-05
      HTH_17  2 ltveEaAelLgvsrstvyrlirrgelpaak.iGrrwriprsdlee 45
                + + E+A+  gvs+++++ +  +g l  ++   +++r+ +  +e+
  KIR62178.1  1 MRIGELAARTGVSVRSLRYYEEQGLLTSLRsPRGHRRYLEGQVER 45
                6799**********************9998855779988877776 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.5
      HTH_17  20 rlirrgelp 28 
                 +l++rge+ 
  KIR62178.1 112 NLAHRGEIA 120
                 899****94 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   4.1e-05      0.15      15      39 ..       2      27 ..       1      32 [. 0.89
   2 ?   -3.4   0.1       3.3   1.2e+04      35      42 ..      40      47 ..      40      47 .. 0.81
   3 ?   -3.3   0.0         3   1.1e+04      22      29 ..      55      62 ..      50      65 .. 0.71
   4 ?   -0.4   0.1      0.38   1.4e+03      15      15 ..     100     100 ..      75     120 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.1e-05
     AbiEi_4 15 ttrelea.aGispsalrrLvrkGwLv 39
                +  el+a  G+s ++lr++ ++G+L+
  KIR62178.1  2 RIGELAArTGVSVRSLRYYEEQGLLT 27
                67899999****************97 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.3
     AbiEi_4 35 kGwLvrlr 42
                +G ++r+r
  KIR62178.1 40 EGQVERIR 47
                58999996 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 3
     AbiEi_4 22 aGispsal 29
                aG+s +++
  KIR62178.1 55 AGLSSRTI 62
                78888776 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.38
     AbiEi_4  15 t 15 
                 +
  KIR62178.1 100 R 100
                 3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 808.55
//
Query:       KIR62179.1  [L=272]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-22   78.5  12.2      5e-22   78.5  12.2    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   1.4     0.014   2.5e+02     137     179 ..      17      88 ..       7      93 .. 0.51
   2 !   78.5  12.2   2.8e-26     5e-22       3     179 ..      84     261 ..      78     266 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.014
  BPD_transp_1 137 lgtllleailgydyseis.............................nggvlalviavlllnlvadilqrll 179
                   lg+ +l ++l+  +++ s                             ++ ++++ +++++l+l++ +l  + 
    KIR62179.1  17 LGLIFLAPLLWTAVASVSphpgtnqvegwglgnyetlanyqagvwryVANSAFVSLLTVALTLLTSFLGGYA 88 
                   555555555555555444555555555555555555555556655555555555555555555555555444 PP

  == domain 2  score: 78.5 bits;  conditional E-value: 2.8e-26
  BPD_transp_1   3 llGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifr 99 
                   l+G+  a ++++++++ll  ++ ++l++P+  l+i+l++ + +  +l+++  +v+++l+++++p+ ++++r  ++++p++l eaa+++G+s +  ++
    KIR62179.1  84 LGGYAFA-RFRFPGRNLLFLVTLAILMVPYATLLIPLYV-LLNEVGLQNSLVGVALVLTMFQLPFSTFLMRISFEAVPRELDEAALVDGCSSFAALW 178
                   5566667.999*************************995.5666699999999******************************************** PP

  BPD_transp_1 100 kvvlPnalppiitglilafggllggavlleflgswpG.lgtllleailgydyseis..nggvlalviavlllnlvadilqrll 179
                   +v+lP+++p +it  ++af +++++++++++l++++  ++++l  ++l  +++      ++ + +v++ l+++l++ +lqr+ 
    KIR62179.1 179 RVLLPAVKPGLITVGLFAFLNAWNDFMAPLILINDTDrMTLPLAVSNLRGQVQGVVdyGATEAGVVVLALPCVLLFLLLQRHY 261
                   ***********************************999777777777777777666854444555555566666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1926.19
//
Query:       KIR62180.1  [L=1525]
Description: hypothetical protein TK50_27405 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-12   46.7  11.0    1.3e-08   35.1   6.3    2.8  2  F5_F8_type_C  F5/8 type C domain
      2e-11   43.5   9.8    1.3e-07   31.2   0.0    4.8  5  Big_4         Bacterial Ig-like domain (group 4)


Domain annotation for each model (and alignments):
>> F5_F8_type_C  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   8.2e-06     0.073      14     114 ..     870     975 ..     850     986 .. 0.73
   2 !   35.1   6.3   1.4e-12   1.3e-08       5     114 ..    1108    1238 ..    1104    1252 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.2e-06
                   GGGGGSSSTTS..SEEESSSSTT.EEEEEEEEEEEEEEEEEEEECSSTT...SSEEEEEEEEEESSSSSEEEEEEECEEESSS.SSSSEEEEEEEEE CS
  F5_F8_type_C  14 aaaaldGnknt..aWsssssddk.qwlqvdLgkpkkidgvvtqgrqdgg...nayvksykiqvsddgetWttvkdekvpgnsd.nstpvtntfdppv 103
                    aa++dG +++  +W   +++d    +++dLg++k +d v+  + +d +      + ++ +qv d +  W++v +    +n + +s++ +  +   v
    KIR62180.1 870 LAAVTDGVTANepYWGNYGTTDRtGFVELDLGSAKSFDNVKAFFVSDRQaggYREPARWWVQVPDGNGGWKEVPG--QFKNPTvPSAKFNEALFGTV 964
                   5788999554466***66666666**************998877776666557888999999988877*****99..44444433444444445799 PP

                   EEEEEEEEEEE CS
  F5_F8_type_C 104 karyvrltpts 114
                   +a  vr+  t+
    KIR62180.1 965 TASKVRIAFTN 975
                   *******9998 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 1.4e-12
                    SSCSSTTTGGGGGGS.....SSTTS.......SEEESSSSTT.......EEEEEEEEEEEEEEEEEEEECSSTT...SSEEEEEEEEEESSSSSE CS
  F5_F8_type_C    5 sseesgewpaaaald.....Gnknt.......aWsssssddk.......qwlqvdLgkpkkidgvvtqgrqdgg...nayvksykiqvsddgetW 77  
                    s++ +++w+   +++         +       +W  ++++++       +w+q    +p ++++ ++++  d+g   +  +++y ++ s+dg+tW
    KIR62180.1 1108 STSGTASWENHSRVNeattpA---SsnpgagnGWGNWGQTQNgtstereAWIQYRWTAPVRLSSTDIYWYDDNGgtrRPTATTYVVESSTDGTTW 1199
                    444556666666666322220...03334445777777776677789************************999999999*************** PP

                    EEEEE...ECE.EESSSSSSSEEEEEEEEEEEEEEEEEEEE CS
  F5_F8_type_C   78 ttvkd...ekv.pgnsdnstpvtntfdppvkaryvrltpts 114 
                    t+vk    + +  +   ++t ++ tf+ p++a ++r+++  
    KIR62180.1 1200 TPVKLaagS-SyADALATNTYNRLTFE-PITASHLRIRIWG 1238
                    ****96532.22333334555566666.****999888755 PP

>> Big_4  Bacterial Ig-like domain (group 4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.11   9.5e+02      12      21 ..     242     251 ..     224     252 .. 0.79
   2 ?   -1.9   0.0      0.32   2.9e+03       4      20 ..     778     794 ..     776     802 .. 0.79
   3 !   14.6   0.0   2.2e-06      0.02       3      45 ..    1264    1306 ..    1262    1318 .. 0.86
   4 !   31.2   0.0   1.5e-11   1.3e-07       5      54 ..    1350    1400 ..    1346    1403 .. 0.89
   5 ?   -3.6   0.5       1.1     1e+04      49      58 ..    1499    1508 ..    1495    1508 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.11
       Big_4  12 tspnLPttVe 21 
                 +sp+LP+tV+
  KIR62180.1 242 SSPTLPATVQ 251
                 579*****96 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.32
       Big_4   4 vevtvtvgtspnLPttV 20 
                 v+vt t  t+++LP+ V
  KIR62180.1 778 VTVTFTAATGADLPSAV 794
                 67784559999***998 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 2.2e-06
       Big_4    3 nvevtvtvgtspnLPttVeatysdgseeevkVtWdkipaedts 45  
                  +v + + vg+ p+LP+t  a+y  g + +v+ +W++i++ +++
  KIR62180.1 1264 PVLIRTGVGQIPTLPATLDAVYASGARGTVAFNWQEITPAQVA 1306
                  56677899***************************88776655 PP

  == domain 4  score: 31.2 bits;  conditional E-value: 1.5e-11
       Big_4    5 evtvtvgtspnLPttVeatysdgsee..evkVtWdkipaedtskpGtytveG 54  
                   ++v+vg+ p LPt+Ve+ y+dgs+    v V+W+ +    + k+G ytv G
  KIR62180.1 1350 AQSVEVGELPYLPTKVEVSYNDGSRDnqAVGVRWNFD-RAIVDKAGRYTVIG 1400
                  56799********************6669******77.7889*******988 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 1.1
       Big_4   49 tytveGtveg 58  
                  t+ v+Gtv+g
  KIR62180.1 1499 TVRVTGTVDG 1508
                  7899***987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 10561.94
//
Query:       KIR62181.1  [L=467]
Description: arabinan endo-1 5-alpha-L-arabinosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-48  164.2   0.2    7.3e-48  163.3   0.2    1.3  1  Glyco_hydro_43   Glycosyl hydrolases family 43
    8.2e-26   90.6  10.2    1.6e-18   67.2   0.6    3.9  4  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    8.9e-09   35.7   0.4    1.6e-08   34.9   0.4    1.4  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.3   0.2   1.2e-51   7.3e-48      10     269 ..     189     451 ..     185     463 .. 0.92

  Alignments for each domain:
  == domain 1  score: 163.3 bits;  conditional E-value: 1.2e-51
                     EESEEEEEETTCEEEEEEEBTEESEEEEEEESSSSSCEEEEECEESTTTCSTTTEECT...EEEEEEEETTEEEEEEEEEETTCCCSEEEEEEES CS
  Glyco_hydro_43  10 ypDpsilrvgedyYlvtstfewfpglrifhSkdLvnWkqvgrvlerrsqlsmkgknas...WAPeiskhdgkyylyytatkkgeakqgifvvtad 101
                      +Dp++++  ++ Ylv+ t    +++++ +S d ++++++g+v+     ++      s   WAP++s+++g+yylyy+a++ g++ ++if++t++
      KIR62181.1 189 VHDPTVVKRPDGTYLVAHTG---DDITLKTSPDRTTFRNAGTVFPGGAPWTTTYTGGSrnlWAPDLSYRNGRYYLYYSASTFGSNRSAIFLATST 280
                     58**************9997...7********************98877777665555557******************9*************** PP

                     STT.S--EECEESSCS....TSSECEEEEEEETTSEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEEEEEEEEECGCCTCTTBBEEEEEEEEETT CS
  Glyco_hydro_43 102 spe.Gpwsdpiklkts....gssgiDpslfedddGkkYlvwgqwdkreghseiylaeldddtlklkgektklikagtelkglkvtEGPhlykrdg 191
                     + + G+w++ + +++s    + ++iDp+l++dd+G+++l++g+++++     i ++++d++t    g+  +++ a+     +   E+P ++kr+ 
      KIR62181.1 281 TGAsGSWTNEGLVIESrtsdDFNAIDPNLIVDDQGRWWLSFGSFWSG-----IKMIQIDPATGRRLGTS-MHSLASY----GPGIEAPVMVKRGA 365
                     *999*********999999999************************8.....*****************.9999999....899*********** PP

                     EEEEEEE....ESTSSTTEEEEEEEESSTTSGGEEECTCCSEE.T.....BTTSTSEEEEEEEEEE-TTSSEEEEEEEESCCTTCCG CS
  Glyco_hydro_43 192 yyYLlaa....eggtgseyavvvarsksllgPyewkkknpiltsr.....speepiqgpGHaslvetpdgewyivyhagrpegrgly 269
                     +yYL ++    ++g  s+y v+v+rs+s++gP+ ++ ++ +l+        ++ +i gpGH++++ ++dg + ++yh+++ +g  l 
      KIR62181.1 366 WYYLYVSfdrcCQGASSTYRVMVGRSASPTGPFVDRAGRAMLSGGgteilASHGSIHGPGHQAVLGDSDG-DCLFYHYYADNGASLL 451
                     *******88877888888*************************99999*******************999.7888888887445544 PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   3.7e-08   0.00022      59      89 .]      29      59 ..      22      59 .. 0.89
   2 !   67.2   0.6   2.6e-22   1.6e-18       3      87 ..      67     149 ..      65     151 .. 0.93
   3 !    8.7   0.2   0.00047       2.8      32      61 ..     141     170 ..     141     173 .. 0.85
   4 ?   -1.4   0.0      0.68     4e+03      36      64 ..     231     260 ..     195     284 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.7e-08
                     SSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2 59 dgtyrivnkasgkvLdvaggstanGtnvqqw 89
                     + +y +vn++sgk++d++++sta+ ++v qw
       KIR62181.1 29 SASYVFVNRHSGKAMDLYDWSTAENAPVNQW 59
                     249***************************9 PP

  == domain 2  score: 67.2 bits;  conditional E-value: 2.6e-22
                      GEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEE CS
  RicinB_lectin_2   3 QqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvq 87 
                      QqW++ + g+g y++++++sgkvL+ ++++   g++++q t+ g+a qq+rl+d ++g +r+vn++s+kv+d++++sta+G ++ 
       KIR62181.1  67 QQWQFVDAGGGFYKVRSRHSGKVLELPNAAD--GTQLVQTTDRGSATQQFRLQDSAGGFVRFVNRQSSKVIDLWEWSTADGGRLA 149
                      *****878899*****************976..59*********************99****************99*****8875 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00047
                      TBCTTEEEEEE-TTT-GGCEEEEECCESSE CS
  RicinB_lectin_2  32 stanganvqqwtcsgaanqqWrledtgdgt 61 
                      sta+g ++  ++++++anqqW+l++ g+gt
       KIR62181.1 141 STADGGRLAGYSNVDGANQQWQLVRPGGGT 170
                      57888899999999*********9888775 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.68
                      TEEEEEE-TTT-GGCEEEE.ECCESSEEEE CS
  RicinB_lectin_2  36 ganvqqwtcsgaanqqWrl.edtgdgtyri 64 
                      g + ++ t++g+   +W    +  +g y++
       KIR62181.1 231 GGAPWTTTYTGGSRNLWAPdLSYRNGRYYL 260
                      444455566688888888642233345554 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.4   2.6e-12   1.6e-08       4     127 .]      33     161 ..      30     164 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 2.6e-12
                     EEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEE..TTSEEEETT..TTEEEEESSSSTTSBEEEEETTTTSGGGCEEEETTTTE... CS
  Ricin_B_lectin   4 eirnvasgkCLdvegeska.gapvglydChgskgkQlwtlt..kdgeirska.qselCldvsstaegakvvlakChkgkgnqrWefdkdgtq... 91 
                       +n++sgk +d  ++s+a +apv++++ ++ +  Q+w++   + g +++++ +s++ l++ + a+g+++v+++   g+++q++++++++ +   
      KIR62181.1  33 VFVNRHSGKAMDLYDWSTAeNAPVNQWTRNDLAV-QQWQFVdaGGGFYKVRSrHSGKVLELPNAADGTQLVQTTDR-GSATQQFRLQDSAGGfvr 125
                     6789****************************66.****995433555555567****************998876.999*****8877777788 PP

                     EEETTTSEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  92 irhkksgkCLdvkgasksne.klilkkcdsgsdsQkW 127
                     +++++s k++d+ + s++++ +l  +  + + ++Q+W
      KIR62181.1 126 FVNRQSSKVIDLWEWSTADGgRLAGY-SNVDGANQQW 161
                     999****************9999999.679******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3259.67
//
Query:       KIR62182.1  [L=284]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-18   66.9  14.3    1.8e-18   66.9  14.3    2.2  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   4.5      0.17     3e+03      43      71 ..      54      87 ..       4      94 .. 0.56
   2 !   66.9  14.3     1e-22   1.8e-18       9     181 ..      86     281 ..      78     284 .] 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.17
  BPD_transp_1 43 f....vilsilghlilp.viillllsaapyvrli 71
                  +     ++++++++    +++l+l +++p+++ i
    KIR62182.1 54 LfadpLFWTAWKNTLVFtGLALVLGYLVPLALAI 87
                  1444444455555555445555555555555544 PP

  == domain 2  score: 66.9 bits;  conditional E-value: 1e-22
  BPD_transp_1   9 a..lnrnkkldkllrpliivllslPsfvlaillvlvf...................vilsilghlilpviillllsaapyvrlirraalrslpkdlv 84 
                   a  ln  + ++ ++r+ ++++ +lP++v+++l+ ++                     + ++ g++++++++++++ +++ ++l++ aal+s+p +l+
    KIR62182.1  86 AilLNELRHFKGFFRIAVYLPVMLPPIVVVLLWKYFYdpgnglfntllrgahlpesQWTQSSGTAMISLVLVSTWANLGGATLMYLAALQSIPGELY 182
                   444567788999********************99877************************************************************ PP

  BPD_transp_1  85 eaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis...nggvlalviavlllnlvadilqrl 178
                   eaa+++Gas wq++r+v++P++   ++ +l+l++++ +  ++ ++ l++ +   ++++  il+y y+++    +g+++a+ +++++++ ++ +++  
    KIR62182.1 183 EAAELDGASVWQRLRHVTIPQLRFIMLVLLLLQVIATMQVFIEPYQLTGTT-NPDTVTVMILIYRYAFTVnndFGLAAAMSVLLFVVLGAFSAIYLR 278
                   *********************************************999665.555666666666666666668566666655555555555555555 PP

  BPD_transp_1 179 ldp 181
                   l +
    KIR62182.1 279 LTR 281
                   555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1895.21
//
Query:       KIR62183.1  [L=288]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-18   65.0  13.6    7.1e-18   65.0  13.6    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.057   13.7   0.3      0.057   13.7   0.3    2.8  2  DUF4064       Protein of unknown function (DUF4064)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   3.5     0.099   8.9e+02      15      51 ..      11      85 ..       2      99 .. 0.60
   2 !   65.0  13.6     8e-22   7.1e-18       2     180 ..      94     278 ..      93     283 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.099
  BPD_transp_1 15 kldkllrpliivllslPsfvlaillvlvf......................................vilsilgh 51
                  +++ + +++  v+  +  +v++++l++++                                      ++ + +++
    KIR62183.1 11 RGRVVYLVVLGVVTVVFALVFFFPLYWMVtgavkspaefaqtpptfvpesfhpqtyaeawdhmqilrYFTNTVYY 85
                  455555555555666666777777776667777777777777776666666666666666555555544444444 PP

  == domain 2  score: 65.0 bits;  conditional E-value: 8e-22
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf..vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGas 93 
                   +++++ aa    + + ++ ++++  + + l+lP  +l+++ +l +  v +  +  l++p+++ l   a ++++++ +++++++p+dl   a ++Ga+
    KIR62183.1  94 LVVAVTAAyalSKLRPRFGNVVLAGMLASLMLPAAALLVPAYLTVtdVPILHVNLLNTPWALWLPGAANAFNVYVLKRFFDQIPDDLLDSASLDGAG 190
                   677888888889999*********************9999776666777778999****************************************** PP

  BPD_transp_1  94 rwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis.nggvlalviavlllnlvadilqrlld 180
                   r ++++ +vlP++ p+++   i++++++++++++++++++++  +tl +  +  +++s+     +++ lvia +++++v+ ++qr + 
    KIR62183.1 191 RLRVLWSIVLPLSRPVLAVVSIFSIIAIWKDFLWPLLVLQDTDAQTLSVALSRLSNVSQVPpTEMMAGLVIAGIPMVVVFLVFQRSIV 278
                   ***************************************9987776666666666666666977777777777777777777777665 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.3   6.4e-06     0.057       7      93 ..      19     124 ..      15     134 .. 0.66
   2 ?   -2.7   3.6      0.82   7.4e+03      65      83 ..     255     273 ..     206     282 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.4e-06
     DUF4064   7 iLglIGgilgillglllllflfllssgefsqeltee............qalsgedasavleflstllivlgvialiaivlgivgalllkknkk...... 87 
                 +Lg++ +++ +++++ l  ++    +++ ++++  +            + +++ d+ ++l +++++++++  ++li +v+ + +a+ l+k +       
  KIR62183.1  19 VLGVVTVVFALVFFFPLYWMVTGAVKSPAEFAQ--TpptfvpesfhpqTYAEAWDHMQILRYFTNTVYYAVGGWLIQLVVAVTAAYALSKLRPrfgnvv 115
                 566666666666665443332222223333333..1447899999998888888999****************************99996555233333 PP

     DUF4064  88 ...vsGilf 93 
                    + ++l+
  KIR62183.1 116 lagMLASLM 124
                 444444444 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.82
     DUF4064  65 gvialiaivlgivgalllk 83 
                 ++++l+++ +  v ++l+ 
  KIR62183.1 255 MMAGLVIAGIPMVVVFLVF 273
                 3334444444444455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2047.71
//
Query:       KIR62184.1  [L=938]
Description: mycodextranase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-33  114.6   8.1    1.4e-17   64.0   0.2    3.4  3  F5_F8_type_C     F5/8 type C domain
    9.3e-15   55.1  14.7    2.9e-14   53.4   6.0    2.9  2  Pectate_lyase_3  Pectate lyase superfamily protein
    2.5e-05   24.2   7.6    2.5e-05   24.2   7.6    3.3  3  Beta_helix       Right handed beta helix region
    0.00017   21.7   0.0        2.8    8.0   0.0    3.5  3  DUF5000          Domain of unknown function


Domain annotation for each model (and alignments):
>> F5_F8_type_C  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.4      0.71   3.2e+03      53     101 ..     342     398 ..     328     420 .. 0.57
   2 !   54.1   0.1   3.6e-18   1.6e-14       2     127 .]     656     778 ..     655     778 .. 0.86
   3 !   64.0   0.2   3.1e-21   1.4e-17       5     126 ..     812     932 ..     808     933 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.71
                   EECSSTTSSEEEEEEEEEESSS..SSEEEEEE........ECEEESSS...SSSSEEEEEEE CS
  F5_F8_type_C  53 qgrqdggnayvksykiqvsddg..etWttvkd........ekvpgnsd...nstpvtntfdp 101
                   +   d  n ++++ k+   +dg  +++ t+++        +    n++   ++++vtntf +
    KIR62184.1 342 DSVVD--NVWMQHTKVGAWMDGpmDNF-TIRNsrildqtaD--GVNFHwgvTNSTVTNTFVR 398
                   44444..78889999999999843355.7777444432221..2222233555556666554 PP

  == domain 2  score: 54.1 bits;  conditional E-value: 3.6e-18
                   EEESSCSSTTTGGGGGGSSSTTSSEEESSSSTTEEEEEEEEEEEEEEEEEEEECSSTTSSEEEEEEEEEESSSSSEEEEEE.ECE.EESSSSSSSEE CS
  F5_F8_type_C   2 itasseesgewpaaaaldGnkntaWsssssddkqwlqvdLgkpkkidgvvtqgrqdggnayvksykiqvsddgetWttvkd.ekv.pgnsdnstpvt 96 
                   +tass  s+++ a +a+dGn +++W s+++  +q+l+vdLg++   +++ +    +g++ ++++  +  s+dg+ + t+ +     + +  ++++v 
    KIR62184.1 656 VTASSV-SQNYVAGNAVDGNAASYWESANGAFPQTLTVDLGAAVSTNRIALRLP-AGWGTRTQTLAVAGSTDGSAYATILAsA-GyTFDPATGNTVS 749
                   79****.*********************************************98.667*********************9932.2233333445666 PP

                   EEEEEEEEEEEEEEEEEEEESSSSSEEEEEE CS
  F5_F8_type_C  97 ntfdppvkaryvrltptswnggngialraEl 127
                   +t++ + + r++rlt t  n+g+  +++ E+
    KIR62184.1 750 ITLP-AGSRRFLRLTFTG-NTGWPAGQVSEF 778
                   6666.9999*********.888888887775 PP

  == domain 3  score: 64.0 bits;  conditional E-value: 3.1e-21
                   SSCSSTTTGGGGGGSSSTTSSEEESSSSTTEEEEEEEEEEEEEEEEEEEECSSTT.SSEEEEEEEEEESSSSSEEEEEE.ECE.EESSSSSSSEEEE CS
  F5_F8_type_C   5 sseesgewpaaaaldGnkntaWsssssddkqwlqvdLgkpkkidgvvtqgrqdgg.nayvksykiqvsddgetWttvkd.ekv.pgnsdnstpvtnt 98 
                   +s+ ++ ++  +a+dGn nt+W s+++  +q l+vdLg+++ +++vv+   ++++   ++++ ++  s+dg+ +tt+k      + + +++++vt+t
    KIR62184.1 812 TSH-ADVYGGGNAVDGNANTYWESANNAFPQSLTVDLGAARSVSRVVLRLPPAAAwQTRTQTLSVLGSTDGSAFTTLKPsA-GyTFDPTTGNTVTVT 906
                   555.7777999*****************************************9999***********************32.345555667789999 PP

                   EEEEEEEEEEEEEEEEEESSSSSEEEEE CS
  F5_F8_type_C  99 fdppvkaryvrltptswnggngialraE 126
                   f+ +++ r+vr+t t  n+++  ++  E
    KIR62184.1 907 FP-ATTRRHVRVTFTG-NTAWPAGQLSE 932
                   99.*************.77766666655 PP

>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   6.0   6.4e-18   2.9e-14       4     207 ..     212     443 ..     208     456 .. 0.70
   2 !    5.4   1.6    0.0031        14      64     153 ..     463     560 ..     453     600 .. 0.62

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 6.4e-18
                      GGGGT---EEEEE-HHHHHHHH......HTSS-EEE-SEEEEESS-EEE-SSEEEEES-TTTEEEEE-TT-..SS--SEEES-TTT-....... CS
  Pectate_lyase_3   4 VkdyGakgDGvtDdtaaiqkaiscasatttgavVYfPaGtYlvsspiilksgvqLvGdgngrpvlkaaaaf..vgaglidgdpyvsg...gs.. 90 
                      V+d+Ga++ G+tD+ta +q+a+  ++ +++g+ V++PaGt+ +   +   +gv+L G+g +++vl ++     ++a+ ++g+ + +g   g+  
       KIR62184.1 212 VTDFGADPSGATDSTARFQAAV--DAGRAQGRAVWIPAGTFTLWDHV-VVDGVTLRGAGPWYSVLGGRHPTdrKRAAGVYGKYVPGGgytGEir 302
                      5*********************..999*****************998.9**********99999988887776666666666555443332267 PP

                      ...-EEEEEEEEEEE...GGGG-SS---SSEEE..ES-EEEEEEEEEEES-SS.............EEE-SSS---TT---SS--E.EEEES-E CS
  Pectate_lyase_3  91 ...ealiatnnfyrq...irnlkiditavapga..tgihwqtaqatslenvef.............emseasgtkhqgifiengsg.gflndlv 162
                          +  ++n+ +r+   i +++  i++ + +a   ++   + +++++++ ++             ++s    ++ +g++ + g + +++++ +
       KIR62184.1 303 pheAGGPSRNVTLRDfaiIGDVRERIDDDQVNAigGAMTDSVVDNVWMQHTKVgawmdgpmdnftiRNSRILDQTADGVNFHWGVTnSTVTNTF 396
                      7765555556555666665555555555533333222333455555565555553222211111004444444666666666666557789*** PP

                      EES-SS-SEEES-EEEEEES-EEE-S--SEEE-TT-EEEEE..EEEE CS
  Pectate_lyase_3 163 fsglgdigiavgnqqftvrnitfnnattgievlwgwgwtlk..nvki 207
                      ++++gd+++a++ q +   n+ f+ +t g+ +l +  +++   ++ki
       KIR62184.1 397 VRNTGDDALAMWAQSVPNVNNSFTRNTIGVTILANHLVSYGgrDIKI 443
                      ********************************987777776445555 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0031
                      TTEEEEE-TT-SS--SEEES-TTT-.............-EEEEEEEEEEEGGGG-SS---SSEEEES-EEEEEEEEEEES-SSEEE-SSS---T CS
  Pectate_lyase_3  64 grpvlkaaaafvgaglidgdpyvsggs...........ealiatnnfyrqirnlkiditavapgatgihwqtaqatslenvefemseasgtkhq 146
                       +p +++ +a++g+++i ++   ++g+            ++ a n  +++++  ++d++ ++++++++hw  +q   +   +++++ a      
       KIR62184.1 463 RYPGVQGDTAVKGTWTIARNTLIRNGNsdynwnfgvgaIWFSALNEAIQGATVNITDTDILDSSYAALHWIEGQSSGINLTNVRIDGAGT---Y 553
                      556666667777777777777664433355566665557777777766666666667776699999999996666665554445554442...2 PP

                      T---SS- CS
  Pectate_lyase_3 147 gifieng 153
                       + ++ +
       KIR62184.1 554 ALQVQAP 560
                      3444444 PP

>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   7.6   5.5e-09   2.5e-05      34     149 ..     343     465 ..     310     475 .. 0.82
   2 !    4.7   4.2    0.0057        25      68     149 ..     494     594 ..     471     600 .. 0.42
   3 ?   -0.2   0.2      0.17   7.8e+02     115     140 ..     651     676 ..     647     692 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 5.5e-09
                 .EEES-EEES-SS-SEEE-TT.-S-EEES-EEE---SEEE-TT.--S--EEES-EEES-SS-SEE-TT....-S--EEES-EEESTT..--SEE---TT CS
  Beta_helix  34 vvienneiannsgsGiyilgs.snntisnntisdnngggialf.gasnnlienneitdnggsGiylny....ssnntienNiidnna..gsGividdss 124
                  v++n  +++ +  G ++ g  +n+ti+n++i d +++g+++  g  n+++ n  ++++g++ + +      + nn++++N+i +++  ++ +v + + 
  KIR62184.1 343 SVVDNVWMQH-TKVGAWMDGPmDNFTIRNSRILDQTADGVNFHwGVTNSTVTNTFVRNTGDDALAMWAqsvpNVNNSFTRNTI-GVTilANHLVSYGGR 439
                 4666555566.88999999999*********************9999999999999999999888884467777788888888.444587777777777 PP

                 ---EEES-EEES-S..SEEEE-TT-SS CS
  Beta_helix 125 snvtvtnNtitnnk..gaGiavvgsss 149
                  ++++t+N+  +++  g Gi+v++++ 
  KIR62184.1 440 -DIKITDNVTADSVtnGGGIHVANRYP 465
                 .9*********9998888898888765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0057
                 -..SEEE-TT--S--EEES-EEES-SS-SEE-TT.........-S--EEES-EEESTT--SEE---TT---EEES-EEE.........S-SSEEEE-TT CS
  Beta_helix  68 n..gggialfgasnnlienneitdnggsGiylny.........ssnntienNiidnnagsGividdsssnvtvtnNtit.........nnkgaGiavvg 146
                 +  g+g+  f a n  i++ +++ ++++ +  +y         ss + ++n +id+ + +++++++ s +v +t+ ++t         n++g G++v+ 
  KIR62184.1 494 WnfGVGAIWFSALNEAIQGATVNITDTDILDSSYaalhwiegqSSGINLTNVRIDGAGTYALQVQAPS-QVSFTGVRATgiaqsnpmhNCVGSGFQVTQ 591
                 14444444445555555555544444421111123333333345555555555555555555555555.333333333311111111133355554444 PP

                 -SS CS
  Beta_helix 147 sss 149
                 +s+
  KIR62184.1 592 GSG 594
                 444 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.17
                 --SEE---TT.---EEES-EEES-SSE CS
  Beta_helix 115 gsGividdss.snvtvtnNtitnnkga 140
                 ++G  +++ss s+++v +N +++n+ a
  KIR62184.1 651 AQGRPVTASSvSQNYVAGNAVDGNA-A 676
                 5666677777778888888888887.3 PP

>> DUF5000  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0021       9.5       8      39 ..     674     705 ..     668     710 .. 0.82
   2 ?    2.7   0.0     0.027   1.2e+02      36      64 ..     758     786 ..     732     803 .. 0.79
   3 !    8.0   0.0   0.00063       2.8       4      39 ..     827     858 ..     821     868 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0021
     DUF5000   8 es.kltqsekgsplprvitfdlgqaaklsrfki 39 
                 +  ++++s++g+ +p+++t+dlg a++  r+++
  KIR62184.1 674 NAaSYWESANGA-FPQTLTVDLGAAVSTNRIAL 705
                 334789999887.**************999975 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.027
     DUF5000  36 rfkiwqregnllynsgnvkefeiwGlsnn 64 
                 rf   + +gn+ + +g+v efe++G   +
  KIR62184.1 758 RFLRLTFTGNTGWPAGQVSEFEVYGGGST 786
                 666667788999999*********94333 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00063
     DUF5000   4 ninteskltqsekgsplprvitfdlgqaaklsrfki 39 
                 n n   ++++s++++ +p+ +t+dlg a ++sr ++
  KIR62184.1 827 NAN---TYWESANNA-FPQSLTVDLGAARSVSRVVL 858
                 333...567666554.*****************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (938 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 6108.99
//
Query:       KIR62185.1  [L=236]
Description: chemotaxis protein CheY [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-35  119.9   0.0    7.9e-35  119.4   0.0    1.2  1  Response_reg  Response regulator receiver domain
    2.7e-27   94.7   0.0    8.1e-27   93.1   0.0    1.8  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
     0.0014   18.5   0.8       0.03   14.2   0.5    3.1  2  MarR_2        MarR family
     0.0038   17.3   0.0     0.0086   16.1   0.0    1.6  2  B12-binding   B12 binding domain
  ------ inclusion threshold ------
       0.12   12.7   0.0       0.23   11.8   0.0    1.4  1  OKR_DC_1_N    Orn/Lys/Arg decarboxylase, N-terminal domain
       0.19   11.6   0.2        1.8    8.5   0.3    2.1  2  PKD           PKD domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.0   2.6e-38   7.9e-35       1     111 [.       5     114 ..       5     115 .. 0.99

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 2.6e-38
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vl+vdDdp+v +++r++le++g+ ev+ a+dg++ l+ + ++++dl++lD++mpg+dGle++++ir++ p+lpvi+lta +ee+d+v +l++gadd+
    KIR62185.1   5 VLVVDDDPTVSDVVRRYLEQDGC-EVRLAADGADGLAAIATHRPDLVVLDLMMPGIDGLEVCRRIRRQLPDLPVIMLTALGEEADRVLGLEVGADDY 100
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   ++Kpf+p+eL+ ++
    KIR62185.1 101 VTKPFSPRELVLRI 114
                   **********9887 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.0   2.7e-30   8.1e-27       2      76 ..     153     226 ..     152     227 .. 0.97

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 2.7e-30
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYr 76 
                   +++lt +ef+lL++L+++pgr +sr++Ll++vwg ++ +d++tv+vh++rLR+k+e ++++pr+I+t++gvGYr
   KIR62185.1 153 APLALTVREFDLLAFLMRHPGRAWSRADLLDKVWGWQF-GDQSTVTVHVRRLREKIEYEPAEPRRIRTIWGVGYR 226
                  6899*********************************9.***********************************9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.53   1.6e+03      35      46 ..      11      22 ..       5      25 .. 0.68
   2 !   14.2   0.5   9.9e-06      0.03       2      46 ..     156     204 ..     155     207 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.53
                HHHHHHHHHHHH CS
      MarR_2 35 ksavsrilkrLv 46
                 ++vs +++r  
  KIR62185.1 11 DPTVSDVVRRYL 22
                467777777655 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 9.9e-06
                 T--HHHHHHHHHHHCTTTSEEEHHHHHH...HHTS.SHHHHHHHHHHHH CS
      MarR_2   2 gltpaqarvLaaLgrrpgrdltvgelar...rlgl.sksavsrilkrLv 46 
                 +lt+ ++++La+L r+pgr  + ++l +    ++  ++s+v+ +++rL 
  KIR62185.1 156 ALTVREFDLLAFLMRHPGRAWSRADLLDkvwGWQFgDQSTVTVHVRRLR 204
                 79****************9446666666544344445577777777776 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.9e-06    0.0086      18      86 ..      16      79 ..       8     101 .. 0.88
   2 ?   -3.5   0.0       3.4     1e+04      62      87 ..     197     222 ..     194     228 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.9e-06
  B12-binding 18 avlaaalrdagfeVqllganvenedivaairaekpdvvglSalltsqleavkelvellkrirprvkvvv 86
                 +v+ ++l+++g eV+l    ++ +d +aai+ ++pd+v+l + +   +++  e++++++r  p+++v++
   KIR62185.1 16 DVVRRYLEQDGCEVRLA---ADGADGLAAIATHRPDLVVLDL-MMPGIDG-LEVCRRIRRQLPDLPVIM 79
                 57999*********877...555899****************.8888866.578899888899999985 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.4
  B12-binding  62 tsqleavkelvellkrirprvkvvvG 87 
                  t +++  +e +e + ++ +r+++++G
   KIR62185.1 197 TVHVRRLREKIEYEPAEPRRIRTIWG 222
                  55555555555554445557777777 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.6e-05      0.23       9      70 ..      18      81 ..      13      90 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.6e-05
  OKR_DC_1_N  9 laealekegfevvgvtstdDllsvieqnsriaavvlsvd...deaaelldeirernedlPvFlla 70
                + ++le++g ev  +++  D+l++i + +r + vvl++     +  e+++ ir+  +dlPv  l+
  KIR62185.1 18 VRRYLEQDGCEVRLAADGADGLAAIAT-HRPDLVVLDLMmpgIDGLEVCRRIRRQLPDLPVIMLT 81
                6789*********************99.889999999999999999***************8876 PP

>> PKD  PKD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.27   8.1e+02      49      69 ..      20      40 ..      10      41 .. 0.83
   2 ?    8.5   0.3   0.00059       1.8      22      41 ..     180     199 ..     173     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.27
                EE-SSEEEEEEEEEE-SS-EE CS
         PKD 49 tYlspGeYeVtvtasnavgsa 69
                 Yl++  +eV++ a  a+g+a
  KIR62185.1 20 RYLEQDGCEVRLAADGADGLA 40
                6899999******99999987 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00059
                 -SS-SEEEEE--SS--EEEE CS
         PKD  22 dganvtysWdfgdgsvvqvl 41 
                 d  +  + W+fgd+s+v+v 
  KIR62185.1 180 DLLDKVWGWQFGDQSTVTVH 199
                 56677899******999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1550.59
//
Query:       KIR62186.1  [L=379]
Description: molybdopterin-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-24   85.1   0.0    5.9e-24   84.6   0.0    1.2  1  Oxidored_molyb  Oxidoreductase molybdopterin binding domain
  ------ inclusion threshold ------
      0.096   13.2  13.8        1.6    9.3   0.5    2.5  2  DUF4405         Domain of unknown function (DUF4405)


Domain annotation for each model (and alignments):
>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.0   6.6e-28   5.9e-24      11     165 ..     245     377 ..     235     379 .] 0.90

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 6.6e-28
                     C-EEEEESTCSSEEEEEHHHHHHC-EEEEEEEEE-TTTTHHHHCHH--SS----TTSEEEEEEEEEEHHHHHHHTTB-ETT..EEEEEEEEE-TC CS
  Oxidored_molyb  11 kwrlevdglvekplslslddLkalpavevtatlqCagnrrkelnkkkvkglqwgagavsnaeWtGvrlrdvLekagvkkpearhvvfegadeele 105
                     ++rl v g   +  +l l+ L+a+ +++    ++C++              +w    +++ +WtGvrlrd+ + +g + p++ +v +e++++   
      KIR62186.1 245 SYRLAVVGPAGRA-DLDLAALHAFAQHTADLPIACVE--------------GW----SATGRWTGVRLRDLVALVGGD-PDRAEVLVESLEA--- 316
                     69****9987776.9**********************..............8*....9*******************8.***********96... PP

                     CTEEEEEEEHHHHCTTT.-EEEEEETTEE--CCCTTT-EEE-TTB-GGGSBTTEEEEEEES CS
  Oxidored_molyb 106 eskygasiplekaledd.vlLAyemngepLppdhGyPlRlvvpglvgarsvKwlkrievsd 165
                      ++y as       +d  +l+A++++gepL+pdhGyP Rl+ p+  g+ ++Kw+ ri+v +
      KIR62186.1 317 AGRYRASTVAPAHARDPlTLIALRLDGEPLHPDHGYPARLIAPNRPGVLQTKWVARITVRE 377
                     7899999876666645448***************************************975 PP

>> DUF4405  Domain of unknown function (DUF4405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.5   0.00018       1.6       4      59 ..      26      81 ..      24      84 .. 0.81
   2 ?    7.7   7.0   0.00059       5.3      11      65 ..     117     160 ..     108     161 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00018
     DUF4405  4 lllllsflvlaiSGillsfavlpsgrgaywa....flglskhqwrdiHeilgllflilvv 59
                ++l ++f+v++++G+l + +  p+g  ++ a    +    +++ + +H  +gl+ + l++
  KIR62186.1 26 VALGVAFAVCFLTGLLSHLVQDPPGWFRWPArpvgL----YRFTQGLHVATGLATVPLLG 81
                68899***************8887766666687762....55699999999999987776 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00059
     DUF4405  11 lvlaiSGillsfavlpsgrgaywa....flglskhqwrdiHeilgllflilvvlHlglh 65 
                 l++++ G+l            +w+    f      + ++ H ++++l ++++++H+g+h
  KIR62186.1 117 LFQVVGGVLNV---------SRWYapmpF------FFTAGHYWVAWLAVGALLVHVGVH 160
                 44444444433.........234445453......69999*****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2820.31
//
Query:       KIR62187.1  [L=226]
Description: glycosyltransferase involved in cell wall biogenesis [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-24   85.7   1.3    3.8e-24   84.8   1.3    1.5  1  DUF2064   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2064  Uncharacterized protein conserved in bacteria (DUF2064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   1.3   2.1e-28   3.8e-24       2     123 .]      38     164 ..      25     164 .. 0.83

  Alignments for each domain:
  == domain 1  score: 84.8 bits;  conditional E-value: 2.1e-28
                 H.HHHTTSSSEEEEEE----TTHHHHHHHH-TTSEEEE--SSSHHHHHHHHHHHH..........HHTT-S.EEEEE-SS-TT--HHHHHHHHHHTTT- CS
     DUF2064   2 laelaaadaaevvlaldgaldkalaeqlalakglevlpQqggdlgeRlarafdra..........feagee.pvlliGsDcpqltaalleqAfeaLeea 89 
                 l+++aaa+a+++ l++dg++         +++g++ l+Q+gg+l +Rla+af+++             g   ++lliG+D+pqltaa+l++A+  L +a
  KIR62187.1  38 LDTVAAATAGARILVVDGDH--------PAPAGWARLAQRGGPLSDRLANAFADTrpvadtrlvaDHCGTAaATLLIGMDTPQLTAAHLDAAVGLLGTA 128
                 33444444444444444444........5667889***************************986344444699************************9 PP

                 ...SEEEEEBTTSSEEEEEEEG-G...GGGTT--TTT CS
     DUF2064  90 ...daVlgpaeDGGYyllGlkkrlapaelFegvpwst 123
                    daVlgpa DGG+++lGl+ ++ +ae+++ +p+st
  KIR62187.1 129 dgpDAVLGPADDGGWWALGLR-EPGHAEALRAIPTST 164
                 78888****************.8*999********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1569.80
//
Query:       KIR62188.1  [L=320]
Description: hypothetical protein TK50_27575 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-32  112.0  10.4    2.7e-32  112.0  10.4    1.4  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        1.3    9.5   6.1       0.23   11.9   0.4    2.5  3  DUF805        Protein of unknown function (DUF805)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   1.6         2   1.8e+04     159     172 ..      13      26 ..       9      30 .. 0.54
   2 !  112.0  10.4     3e-36   2.7e-32       1     184 [.     113     312 ..     113     313 .. 0.99

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 2
  BPD_transp_1 159 lalviavlllnlva 172
                   +a++++v ll++++
    KIR62188.1  13 AAVLFVVSLLCFLS 26 
                   45555555555554 PP

  == domain 2  score: 112.0 bits;  conditional E-value: 3e-36
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.................vilsilghlilpviillllsaapyvrlirraalrslp 80 
                   +i++++ aa +r++ +d+ ++  ++++ls+P fv++++l++vf                  i + lg+l lp ++l++  +a y r++r++ +++  
    KIR62188.1 113 AIPAAVAAAARRGSAVDRGMSLWVFTVLSTPNFVVGFVLIWVFavqlglypangyvpvsaGIGQHLGSLLLPSLTLAAAPFALYQRVLRADLVETYG 209
                   589999999***************************************************9999********************************* PP

  BPD_transp_1  81 kdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqr 177
                   ++++++ara+G s+ +   +++++ +l  + t++++++g l+g  v++e+l+s pGlg  l ++ +++dy+e + g+vl++++a++l+n+++d+++ 
    KIR62188.1 210 QEFMQVARAKGISPLRAAMRHAFRPSLLNLTTSVGVTVGVLIGSDVIVETLFSLPGLGAELAHSVSARDYAEVQ-GLVLVIAAAFVLINAAVDLIYG 305
                   **************************************************************************.********************** PP

  BPD_transp_1 178 lldprvr 184
                   l+dpr+r
    KIR62188.1 306 LIDPRLR 312
                   *****98 PP

>> DUF805  Protein of unknown function (DUF805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.22     2e+03      77      97 ..      17      35 ..       4      42 .. 0.59
   2 ?   11.9   0.4   2.6e-05      0.23      37     101 ..      98     167 ..      71     170 .. 0.67
   3 ?   -1.6   0.1      0.39   3.5e+03      42      46 ..     284     288 ..     228     306 .. 0.55

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.22
      DUF805 77 lvplialllllvllllpgtpg 97
                +  +++ll++l l llpg+p 
  KIR62188.1 17 F--VVSLLCFLSLSLLPGDPA 35
                1..235566667777777765 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.6e-05
      DUF805  37 aavasalsvvlallllvps.lavtvRRlH..Dtgrsgwllllllvp..lialllllvllllpgtpgenry 101
                 ++   +ls ++a+++ +p+ +a ++RR    D+g s w++++l  p  +++++l++v++++ g   +n y
  KIR62188.1  98 TIELIVLSQLIAIAAAIPAaVAAAARRGSavDRGMSLWVFTVLSTPnfVVGFVLIWVFAVQLGLYPANGY 167
                 3334445555556666665899999**6533888899987777777555588889999998887777766 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.39
      DUF805  42 alsvv 46 
                  l +v
  KIR62188.1 284 GLVLV 288
                 22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2212.49
//
Query:       KIR62189.1  [L=482]
Description: (4Fe-4S) protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-46  157.2   0.1    6.7e-46  156.4   0.1    1.4  1  LUD_dom   LUD domain
    2.1e-08   34.5   3.8    6.9e-07   29.6   4.7    2.4  2  Fer4_8    4Fe-4S dicluster domain
    8.1e-07   29.3   4.5    1.8e-06   28.2   4.5    1.6  1  DUF3390   Domain of unknown function (DUF3390)
    3.4e-05   23.5  12.1      0.012   15.4   2.9    2.3  2  Fer4      4Fe-4S binding domain
    4.6e-05   23.4   7.6     0.0012   18.9   8.3    2.2  2  Fer4_10   4Fe-4S dicluster domain
    5.4e-05   23.7   5.8    0.00021   21.8   5.8    1.9  1  Fer4_7    4Fe-4S dicluster domain
    0.00011   22.7   3.0    0.00098   19.6   3.5    2.1  2  Fer4_17   4Fe-4S dicluster domain
    0.00057   19.8  10.0      0.058   13.5   2.1    2.3  2  Fer4_6    4Fe-4S binding domain
    0.00068   20.4  12.5        0.2   12.7   0.9    2.3  2  Fer4_3    4Fe-4S binding domain
     0.0012   19.0   7.0      0.029   14.5   8.2    2.2  2  Fer4_9    4Fe-4S dicluster domain
     0.0012   18.6   2.3       0.62    9.8   0.0    2.3  2  Fer4_20   Dihydroprymidine dehydrogenase domain II, 4Fe-4S cl
     0.0015   18.7   2.1        0.6   10.3   0.2    2.6  3  Fer4_18   4Fe-4S dicluster domain
     0.0016   18.4  13.2       0.01   15.9   3.9    2.4  2  Fer4_2    4Fe-4S binding domain
     0.0021   18.4   7.6       0.19   12.3   2.1    2.3  2  Fer4_4    4Fe-4S binding domain
     0.0071   16.5   4.6      0.093   12.9   0.6    2.3  2  Fer4_21   4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.026   15.5  10.0       0.53   11.3  10.3    2.3  2  Fer4_16   4Fe-4S double cluster binding domain
       0.15   11.9   0.0       0.28   11.0   0.0    1.3  1  Gloverin  Gloverin-like protein
        1.5    9.4   6.5        9.9    6.8   6.5    2.1  1  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I


Domain annotation for each model (and alignments):
>> LUD_dom  LUD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4   0.1   6.7e-49   6.7e-46       3     164 ..      85     293 ..      83     306 .. 0.97

  Alignments for each domain:
  == domain 1  score: 156.4 bits;  conditional E-value: 6.7e-49
     LUD_dom   3 efienleangaevyyaktaeealelilellkeksv.......................vseggstdlgeigl...........apalhsgreevldlfe 67 
                 +++++++a+g++v++a++a+ea++++++l+++ ++                       ++ +++tdl+e+++            pa+h++r e++d+f+
  KIR62189.1  85 QLERAVTARGGTVHWARDAAEANAIVVDLVRQAGAtevvkvksmvtaeiglnealaqgGIGAVETDLAELIVqlgrdhpshilVPAIHRNRREIRDIFR 183
                 68899****************************999*************************************************************** PP

     LUD_dom  68 ekl..............treareelrekfltadvgitganfaiAetGtlvlvdnegnrraltflpkvhivvvginkivpdledavkrlktaprnatrlq 152
                 +++              +++ar +lr++flta v+++ganfaiAetGtl +v++egn+r++ +lp++ i v+gi+k++p+  d++++l+++pr+ t  +
  KIR62189.1 184 REMagvdpalgdepaelVEAARAHLRQRFLTARVAVSGANFAIAETGTLAVVESEGNGRMCLTLPRTLITVMGIEKVLPSWRDLEVFLQLLPRSSTA-E 281
                 *************************************************************************************************.* PP

     LUD_dom 153 kktpyvsfisgp 164
                 +++py+s+++g 
  KIR62189.1 282 RMNPYTSMWTGA 293
                 *********986 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   4.7   6.9e-10   6.9e-07       3      65 .]     321     387 ..     319     387 .. 0.84
   2 !   11.9   0.1   0.00023      0.23       7      33 ..     375     401 ..     370     424 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 6.9e-10
      Fer4_8   3 ekCieCgaCqsaCpvlrrtk.khlldargeaaedvqeeqvlee....eealwsCttcgaCtevCpvgi 65 
                  +Ci+C+aC + Cpv++rt+ +   + + + ++ ++ +  l++     +  ++ t cgaC ++Cpv i
  KIR62189.1 321 LRCIRCSACLNVCPVYERTGgHAYGSVYPGPIG-AVLTPQLTGvadhPHLPFASTLCGACFDACPVAI 387
                 79******************8888999999999.4444443445777999***************976 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00023
      Fer4_8   7 eCgaCqsaCpvlrrtkkhlldargeaa 33 
                  CgaC++aCpv+ +  ++l + r +a 
  KIR62189.1 375 LCGACFDACPVAIDIPRMLVHLRAQAV 401
                 6*********99887754444444433 PP

>> DUF3390  Domain of unknown function (DUF3390)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   4.5   1.8e-09   1.8e-06      20      84 ..     407     480 ..     396     482 .] 0.84

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.8e-09
     DUF3390  20 gakasaaEklamkgfalaasspalYrlgtklatrl..........rgllPkklkaWtsvRtlPkpakkslrdlak 84 
                 + + +++E++am++ ++++ssp+ + ++++++             r+l P  ++aWt++R++P+p ++ +r   +
  KIR62189.1 407 QRRLPTSEAAAMSVLGWLMSSPGRWSAALRALWLGrvlgrrtgwiRRLPPP-MSAWTRSRDAPRPPRRPFRARGR 480
                 5566889********************999876445589999**8888886.******************98755 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   2.9   1.2e-05     0.012       7      20 ..     322     335 ..     320     336 .. 0.94
   2 !   13.3   1.8   5.6e-05     0.056      10      20 ..     375     385 ..     374     387 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-05
                 TSSS-THHHHHSTT CS
        Fer4   7 kCigCGaCvevCPv 20 
                 +Ci+C aC +vCPv
  KIR62189.1 322 RCIRCSACLNVCPV 335
                 8************8 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 5.6e-05
                 S-THHHHHSTT CS
        Fer4  10 gCGaCvevCPv 20 
                  CGaC ++CPv
  KIR62189.1 375 LCGACFDACPV 385
                 7*********9 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   8.3   1.2e-06    0.0012       8      56 .]     322     384 ..     317     384 .. 0.94
   2 !   10.4   0.5   0.00053      0.53      10      24 ..     374     398 ..     370     416 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.2e-06
     Fer4_10   8 tCirCgkCvkaCPadl..............tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 +CirC +C ++CP++                + + +++ ++ +   + + + t cgaC +aCP
  KIR62189.1 322 RCIRCSACLNVCPVYErtgghaygsvypgpIGAVLTPQLTGVADHPHLPFASTLCGACFDACP 384
                 8*************99*************99999999999999999999999**********9 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00053
     Fer4_10  10 irCgkCvkaCPadl..........t 24 
                 + Cg+C +aCP+ +           
  KIR62189.1 374 TLCGACFDACPVAIdiprmlvhlrA 398
                 57*********96666655554441 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   5.8   2.1e-07   0.00021       1      51 [.     322     386 ..     322     387 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.1e-07
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenek..............gtekveidpekClgCgaCvavCPtg 51 
                 rCi C aC ++Cpv+ ++   +                  g+++  + p   + CgaC ++CP+ 
  KIR62189.1 322 RCIRCSACLNVCPVYERTGGHAYGSVypgpigavltpqltGVADHPHLPFASTLCGACFDACPVA 386
                 8***********988888765322113344433333222233444455667899*********97 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   3.5   9.9e-07   0.00098       1      61 []     322     388 ..     322     388 .. 0.73
   2 ?    6.4   0.2     0.013        13       4      20 ..     375     391 ..     372     418 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 9.9e-07
     Fer4_17   1 rCiqCgyClpeCpsyeaydnepk.....kllraaklglleeaeke.ekaslCieCgeCerkCPqgld 61 
                 rCi+C++Cl++Cp ye+++ +        ++ a+   +l+++ +  +     + Cg C  +CP  +d
  KIR62189.1 322 RCIRCSACLNVCPVYERTGGHAYgsvypGPIGAVLTPQLTGVADHpHLPFASTLCGACFDACPVAID 388
                 7****************88876622222445554445555554443789999***********8775 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.013
     Fer4_17   4 qCgyClpeCpsyeaydn 20 
                  Cg+C ++Cp  ++++ 
  KIR62189.1 375 LCGACFDACPVAIDIPR 391
                 59999999998877665 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   2.1   5.9e-05     0.058       8      21 ..     322     335 ..     320     342 .. 0.91
   2 !   10.7   1.1   0.00046      0.45      11      22 ..     375     386 ..     374     389 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.9e-05
      Fer4_6   8 kCigCgdCvrvCPe 21 
                 +Ci C +C +vCP 
  KIR62189.1 322 RCIRCSACLNVCPV 335
                 7************6 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00046
      Fer4_6  11 gCgdCvrvCPeg 22 
                  Cg+C+++CP +
  KIR62189.1 375 LCGACFDACPVA 386
                 6*********75 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   4.7   0.00027      0.27       1      13 [.     323     335 ..     323     336 .. 0.95
   2 !   12.7   0.9    0.0002       0.2       2      13 ..     374     385 ..     374     387 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00027
      Fer4_3   1 CtgCgaCvevCPv 13 
                 C+ C+aC++vCPv
  KIR62189.1 323 CIRCSACLNVCPV 335
                 ************7 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.0002
      Fer4_3   2 tgCgaCvevCPv 13 
                 t CgaC+++CPv
  KIR62189.1 374 TLCGACFDACPV 385
                 57*********7 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   1.8   0.00012      0.12      34      48 ..     321     335 ..     293     338 .. 0.76
   2 !   14.5   8.2   2.9e-05     0.029       1      49 [.     322     386 ..     322     388 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
      Fer4_9  34 eaCigCgaCveaCpk 48 
                  +Ci C aC+++Cp 
  KIR62189.1 321 LRCIRCSACLNVCPV 335
                 579999999999995 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.9e-05
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase................eaCigCgaCveaCpkg 49 
                 +C++C aC ++Cp    ++ +a + +     ++                 a + CgaC++aCp  
  KIR62189.1 322 RCIRCSACLNVCPVYERTGGHAYGSVYPGPIGAvltpqltgvadhphlpFASTLCGACFDACPVA 386
                 6***********988888888888888888888888999999999999977899*********86 PP

>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.8    0.0026       2.6      17      39 ..     316     336 ..     306     342 .. 0.84
   2 !    9.8   0.0   0.00063      0.62      31      58 ..     378     405 ..     373     417 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0026
                 HHHHHTT----TT-HHHHCSTT- CS
     Fer4_20  17 aleeAsRClqCkkapcvkgCPve 39 
                 a + A RC++C  + c + CPv 
  KIR62189.1 316 AGRAALRCIRC--SACLNVCPVY 336
                 667899*****..89******96 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00063
                 HHHHCSTT---HHHHHHHHHTT-HHHHH CS
     Fer4_20  31 pcvkgCPveidipefikkiaegnleeaa 58 
                  c ++CPv idip+++ +++++ +++ a
  KIR62189.1 378 ACFDACPVAIDIPRMLVHLRAQAVAAGA 405
                 699**************99998887665 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       8.1   8.1e+03      33      68 ..      93     129 ..      90     131 .. 0.71
   2 !   10.3   0.2   0.00061       0.6      57      73 ..     319     335 ..     303     340 .. 0.83
   3 !    7.3   0.1    0.0053       5.3      62      78 ..     374     390 ..     366     399 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 8.1
     Fer4_18  33 rGekia.grkkekkalkekeerkekgagdcidcescv 68 
                 rG++++  r++++++   +++ +++ga++ ++ +s v
  KIR62189.1  93 RGGTVHwARDAAEANAIVVDLVRQAGATEVVKVKSMV 129
                 6665543666777777788999999999999888777 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00061
     Fer4_18  57 gagdcidcescvkvcPt 73 
                 +a  ci c++c++vcP+
  KIR62189.1 319 AALRCIRCSACLNVCPV 335
                 5567************7 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0053
     Fer4_18  62 idcescvkvcPtgidir 78 
                 + c++c + cP+ idi 
  KIR62189.1 374 TLCGACFDACPVAIDIP 390
                 67*************95 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   3.9     1e-05      0.01       8      21 ..     321     334 ..     314     335 .. 0.90
   2 !    7.6   1.9    0.0044       4.3      12      21 ..     375     384 ..     374     385 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1e-05
      Fer4_2   8 drCigCgaCvsaCP 21 
                  rCi+C+aC+++CP
  KIR62189.1 321 LRCIRCSACLNVCP 334
                 59************ PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0044
      Fer4_2  12 gCgaCvsaCP 21 
                  CgaC +aCP
  KIR62189.1 375 LCGACFDACP 384
                 5********* PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   2.1   0.00019      0.19       3      16 ..     322     335 ..     320     341 .. 0.93
   2 !    9.0   0.3    0.0022       2.2       7      16 ..     376     385 ..     374     393 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00019
      Fer4_4   3 rCigCgsCvaaCPq 16 
                 rCi+C +C ++CP+
  KIR62189.1 322 RCIRCSACLNVCPV 335
                 8************5 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0022
      Fer4_4   7 CgsCvaaCPq 16 
                 Cg+C +aCP+
  KIR62189.1 376 CGACFDACPV 385
                 *********6 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.6   9.3e-05     0.093      40      54 ..     322     336 ..     306     339 .. 0.88
   2 ?    4.8   0.2      0.03        30      43      56 ..     375     386 ..     361     391 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.3e-05
     Fer4_21  40 eCvGCnlCssvCPve 54 
                 +C+ C  C++vCPv 
  KIR62189.1 322 RCIRCSACLNVCPVY 336
                 69***********95 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.03
     Fer4_21  43 GCnlCssvCPvedc 56 
                  C  C + CPv  +
  KIR62189.1 375 LCGACFDACPV--A 386
                 58889999998..3 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  10.3   0.00053      0.53       1      66 [.     322     385 ..     322     386 .. 0.81
   2 ?    8.5   0.9    0.0039       3.9       4      15 ..     375     386 ..     372     417 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00053
     Fer4_16   1 rCgtCgkCaevCPtnaikek.kekeiearecisyntaekkdlaedeekckkqeaitgCdiCqdvCPa 66 
                 rC++C +C++vCP+   ++  ++ ++ +    +  t++  ++a++        a t C++C d+CP+
  KIR62189.1 322 RCIRCSACLNVCPVYERTGGhAYGSVYPGPIGAVLTPQLTGVADHPHLPF---ASTLCGACFDACPV 385
                 6*************887777366667777776668888888888877776...889**********7 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0039
     Fer4_16   4 tCgkCaevCPtn 15 
                  Cg+C ++CP++
  KIR62189.1 375 LCGACFDACPVA 386
                 599999999985 PP

>> Gloverin  Gloverin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00028      0.28      88     142 ..      90     147 ..      82     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00028
    Gloverin  88 stsyggrldwanknaka...aidlnrqiggsagieasasgvwdldknthlsaggvvsk 142
                  t+ gg + wa + a+a    +dl rq g +  ++  +    +++ n  l+ gg+ + 
  KIR62189.1  90 VTARGGTVHWARDAAEAnaiVVDLVRQAGATEVVKVKSMVTAEIGLNEALAQGGIGAV 147
                 5889*******99988733358*************9999999***********98665 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.5    0.0099       9.9       5      54 ..     322     386 ..     321     387 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0099
     Fer4_13   5 tCiacgaCvelaPdvFeeddeggasvvaeqpts................eeekadaeeAadaCPve 54 
                 +Ci c aC +++P v+e+     +  v+ +p +                +    ++ + +daCPv+
  KIR62189.1 322 RCIRCSACLNVCP-VYERTGGHAYGSVYPGPIGavltpqltgvadhphlPFASTLCGACFDACPVA 386
                 6************.9999998888888887766666655555555544444478888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3327.01
//
Query:       KIR62190.1  [L=202]
Description: hypothetical protein TK50_27640 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-23   83.3   0.0    3.6e-22   79.0   0.0    2.0  2  LUD_dom   LUD domain


Domain annotation for each model (and alignments):
>> LUD_dom  LUD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.0    0.0059     1e+02       4      36 ..      37      68 ..      34      93 .. 0.88
   2 !   79.0   0.0     2e-26   3.6e-22      86     189 .]     105     198 ..     100     198 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.0059
     LUD_dom  4 fienleangaevyyaktaeealelilellkeks 36
                f+e+l+   a +y++   +e+  +i+++l e++
  KIR62190.1 37 FVERLTDYRASAYRCGA-DEVGGAIARILGERG 68
                89**************9.***********9986 PP

  == domain 2  score: 79.0 bits;  conditional E-value: 2e-26
     LUD_dom  86 dvgitganfaiAetGtlvlvdnegnr.raltflpkvhivvvginkivpdledavkrlktaprnatrlqkktpyvsfisgpsrtadielvlvygvhgpkr 183
                 d  ++g+  aiA tGt+vl +++g++ ra+t++p+ h+vvv +++ivp + dav+rl       tr       +++isgps t die   v+gvhgp+ 
  KIR62190.1 105 DGVVSGCALAIALTGTIVLDSGPGQGwRAVTLVPDYHLVVVRAEQIVPAVPDAVARLDA-----TR------PMTWISGPSATSDIEFDRVEGVHGPRT 192
                 6679*****************************************************99.....66......789************************ PP

     LUD_dom 184 ihvilv 189
                 + v++v
  KIR62190.1 193 LDVLVV 198
                 *99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1410.24
//
Query:       KIR62191.1  [L=503]
Description: acyl-CoA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-98  330.3   0.1    1.7e-98  330.0   0.1    1.0  1  AMP-binding     AMP-binding enzyme
    1.3e-25   90.2   0.5    2.7e-25   89.2   0.5    1.6  1  AMP-binding_C   AMP-binding enzyme C-terminal domain
     0.0025   17.7   0.0     0.0087   16.0   0.0    2.0  1  Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.0   0.1  2.8e-102   1.7e-98       2     422 ..       8     409 ..       7     410 .. 0.85

  Alignments for each domain:
  == domain 1  score: 330.0 bits;  conditional E-value: 2.8e-102
                  HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE CS
  AMP-binding   2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli 99 
                  +++aa + d+ a+vd  +  +lTY+++++r+ rlA +L  lGv++gdrVa+l+pn++ ++ a +++l+ Gav+v+ln++l+a+el+yil++++++vl+
   KIR62191.1   8 DRAAAVHADRLAVVD--GALRLTYHQFHDRCLRLAGALADLGVRPGDRVAVLAPNTHLMLEAHFGVLYGGAVLVTLNTRLSADELRYILDHAGCRVLL 103
                  789999*********..9******************************************************************************** PP

                  ETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEH.HHHHHHHHHHHHHHC CS
  AMP-binding 100 atvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlsh.rnlvanvaslkletr 196
                     d +l +  +++   ++a   v ++d ++ +  e+l ++++++       +++ +++  l+ + YTSGTTG+PKGVm+ h +++++++a      +
   KIR62191.1 104 --HDPDL-AGFAATI--VRALPGVRLVDGGAEY--ERLLAAAPPR-------RVPVTDERALMALNYTSGTTGRPKGVMYHHrGAYLQSLAM---VAH 184
                  ..44444.2222222..2233345556655544..4466666444.......3345899***********************4444555444...357 PP

                  SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT.-SEEEEESS CS
  AMP-binding 197 fklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlss.lrlvllgge 293
                  f+l++d v l++lp++h+ g+ ++++++ ++G+t v+lp+ a+   ++++eli++++vt+++++P+vl  l+e+ga   a      ++ + +  +gg+
   KIR62191.1 185 FGLGADTVHLWTLPMFHCNGW-CFTWAVTAAGGTHVCLPRVAP---DRVWELIRDERVTMLCAAPTVLVSLAEAGAAG-A----VAGRqVTV-AVGGA 272
                  9999999**************.*****************7765...5678***********************87666.2....44553444.67*** PP

                  -EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEE.........CHCTTTCTSTTS-BEE.-TTEEEEEE-TTTSCBEE.TTSE.EEEEEEETTS-SEBT CS
  AMP-binding 294 plspellrffralfgeevlegYGlTEttgvvtv.........lpleedkkklgsvGkp.lpgvevkivDeetgepvp.dgee.GellvrgpgvmkgYl 379
                  p+sp+llr++ al+ + v ++YGlTEt g +++          p  e+ + + ++G + +  +e++++D + g+ vp dge+ Ge+ +rg++vm gY+
   KIR62191.1 273 PPSPSLLRRCAALGFD-VTHLYGLTETFGPAAIcdwrpewddRPAAEQATLRARQGVAnVVSCELRVLDAD-GRDVPaDGETvGEVAIRGNNVMLGYY 368
                  *************998.**************777999999985556777788889988355*********9.66666488889*************** PP

                  T-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 380 kkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                  ++++at+ a   +g+w+rTGDlg++++dGyl++ +R+kd+i++
   KIR62191.1 369 RDEAATRAAG--PGGWFRTGDLGVRHPDGYLQLRDRAKDVIIS 409
                  **99999886..467**************************86 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.5   4.5e-29   2.7e-25       1      76 []     418     492 ..     418     492 .. 0.96

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 4.5e-29
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    evE++l shpaV eaaVv+vpde++Ge++vafV+l++g +a +++L+ahvr++l++++vp++++f d lpkt+sGK
     KIR62191.1 418 EVEAVLCSHPAVLEAAVVAVPDERWGERPVAFVTLRPGAPADPDALRAHVRAHLAAFKVPDRIEFGD-LPKTASGK 492
                    8**********************************99964578**********************95.*******9 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.5e-06    0.0087      19      45 ..      30      56 ..       4      66 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.5e-06
                    TTS-EEEEEE-GGGSSST--TTEEEEE CS
  Prot_ATP_ID_OB 19 ssdeevvvslagavpremLrpgDlVav 45
                    +    ++++laga+++  +rpgD+Vav
      KIR62191.1 30 HQFHDRCLRLAGALADLGVRPGDRVAV 56
                    566789********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3438.88
//
Query:       KIR62192.1  [L=213]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-33  113.3   0.6    1.1e-32  112.6   0.6    1.3  1  TetR_C_24  Tetracyclin repressor-like, C-terminal domain
    1.4e-12   47.2   0.1    2.2e-12   46.5   0.1    1.3  1  TetR_N     Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.034   14.2   0.1       0.11   12.6   0.1    1.9  1  TetR_C_27  Tetracyclin repressor-like, C-terminal domain
       0.12   12.5   0.0       0.17   12.0   0.0    1.3  1  TetR_C_4   YsiA-like protein, C-terminal region


Domain annotation for each model (and alignments):
>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6   0.6   2.5e-36   1.1e-32       2     113 ..      91     202 ..      90     203 .. 0.98

  Alignments for each domain:
  == domain 1  score: 112.6 bits;  conditional E-value: 2.5e-36
                 SSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB-SS-HHHHHHHHHHHHHCHHHC--TTSSS-HH CS
   TetR_C_24   2 gspaerLralvrahveviaeereeaavllrelraLspehreeiralrreyerllrdlieeGvaagefedldpklaalailgmlnwvyrWyrpdGplspe 100
                 ++ + rLr++ +ahv+++a++ +ea+v +re+++L+++hr+ + ++r  yer+lr+li++Gv+ g f+++ ++la++ail m  +v++W+rpdG+ +++
  KIR62192.1  91 TDVESRLRRAAEAHVRYHARHAAEAFVGNREINSLDEPHRSDVLDRRATYERRLRQLITDGVDLGRFRVPSARLASYAILDMGIGVAMWFRPDGEFTED 189
                 57788********************************************************************************************** PP

                 HHHHHHHHHHHH- CS
   TetR_C_24 101 eiadqyadlllrg 113
                 e+ +qy +++lr+
  KIR62192.1 190 EVVRQYGEMALRI 202
                 ***********96 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.1   4.9e-16   2.2e-12       3      45 ..      27      69 ..      25      71 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 4.9e-16
                HHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHH CS
      TetR_N  3 daArelfaerGydattvreIAkrAGvskgalYryFpsKeeLle 45
                +aA+ lfa rGy+ tt++eI +rAG+  +++Y++ +sK++Ll+
  KIR62192.1 27 AAALDLFAARGYQLTTMDEIGERAGIRGPSVYKHVRSKQDLLA 69
                79***************************************96 PP

>> TetR_C_27  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.4e-05      0.11       3      80 ..      95     172 ..      93     177 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCT-STT--HHHHHHHHHHH CS
   TetR_C_27   3 erLrewlaalfeakrrkarddpelFatyvvlieeelevvekhieeleeqlaeIireGvaaGeFkaadpeaaaravfda 80 
                  rLr+ ++a ++ + r+a +     + + +l e +++ v + +++ e  l ++i++Gv+ G F++  ++ a+ a++d+
  KIR62192.1  95 SRLRRAAEAHVRYHARHAAEAFVGNREINSLDEPHRSDVLDRRATYERRLRQLITDGVDLGRFRVPSARLASYAILDM 172
                 6788888888888888888777777888888888888888999999****************************9998 PP

>> TetR_C_4  YsiA-like protein, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.8e-05      0.17       4      88 ..      75     159 ..      73     193 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHC-HHHHHHHHTTCCGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-T CS
    TetR_C_4   4 klgqfvekikeeikekesaeeklkllvekhfsqlsadkelaivtqlelrqsnlelrlkinevlkgyltlldeiiaeGkekGefke 88 
                  + +++e  + ++++ +++e++l+++ e h++  + +   a v   e+   ++  r  + +    y + l ++i++G + G f+ 
  KIR62192.1  75 TMTALLEDQQVALDGGTDVESRLRRAAEAHVRYHARHAAEAFVGNREINSLDEPHRSDVLDRRATYERRLRQLITDGVDLGRFRV 159
                 588999999*************************************************************************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1586.32
//
Query:       KIR62193.1  [L=390]
Description: rhamnose isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2778.91
//
Query:       KIR62194.1  [L=407]
Description: hypothetical protein TK50_27730 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     7e-155  515.9   1.6   7.8e-155  515.8   1.6    1.0  1  UPF0261         Uncharacterised protein family (UPF0261)
  ------ inclusion threshold ------
      0.067   13.6   0.0       0.57   10.6   0.0    2.3  2  DrsE            DsrE/DsrF-like family
       0.73    9.9   7.9         37    4.4   3.6    3.9  3  PepSY_2         Peptidase propeptide and YPEB domain
        4.2    7.8   8.0        1.2    9.5   0.1    2.9  2  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> UPF0261  Uncharacterised protein family (UPF0261)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  515.8   1.6  1.7e-158  7.8e-155       1     403 [.       2     402 ..       2     403 .. 0.98

  Alignments for each domain:
  == domain 1  score: 515.8 bits;  conditional E-value: 1.7e-158
     UPF0261   1 ktvlligtlDTKleellflrelieeegvevlliDvgtreeekeaidisreevleaagkeaeeelesldrgeaieamseaaaklvkely.eekidgvisl 98 
                 +tv+l+gtlDTK+ ++++l+e +++ gv+vl++D+gt  ++  ++d++++ev+eaag++++e l+ +drg+a++am ++aa++v +l+ ++++dgv+++
  KIR62194.1   2 PTVVLVGTLDTKGPDYAYLAERLRALGVDVLVVDAGTAAPRGLTPDVTADEVAEAAGTTVAELLAAGDRGAAVTAMGRGAAAVVGRLVaAGRVDGVLAA 100
                 69*********************************************************9999*************************8888******* PP

     UPF0261  99 GGsggtslataamralpiGlPKlivSTvAsgdvspyvgesDitlmysvvDiaGlNsilrkvLsnAaaaiaGmakaeekskeekeeeeekplvaitmfGv 197
                 GGsgg+s+a a++ a p+GlPKl+vST+Asgdvspyvg++D+t+mysvvD+aG+N+i+r vL nAaaa+aGma+ +++   ++++++ +p+va++mfGv
  KIR62194.1 101 GGSGGSSIAGAVLAACPVGLPKLLVSTMASGDVSPYVGAKDVTIMYSVVDVAGVNRISRLVLGNAAAAMAGMARDRSR---ADTATDARPIVAASMFGV 196
                 **************************************************************************9996...45689************* PP

     UPF0261 198 ttpavdairelLeeegyevlvFhAtGtGGramErLireglldavlDltttEladelvggvlsagpdRleaaaekgiPqvvsvGalDmvnfgaletvpek 296
                 ttpav+a++++Lee gyevlvFhAtG+GGra+E L+++gll++vlDltttElad lvggvl+agpdRl+aa+++g+Pqv+++GalDmvnfg+ +tvpe+
  KIR62194.1 197 TTPAVEAAKARLEELGYEVLVFHATGAGGRALEGLAQAGLLAGVLDLTTTELADDLVGGVLTAGPDRLTAAGAAGVPQVIAPGALDMVNFGPVDTVPER 295
                 *************************************************************************************************** PP

     UPF0261 297 fkgrklyehnpqvtlvrtsaeenrelgefiaeklnkakgpvrvllPkkGvsaldaeggpfedpeadealfealeeelkeseievvevdahindeeFaea 395
                 f++r +++hnp+vtl+rt+a+e++elg+ i++k ++a+gp++v+ P +Gvsalda+g+pf dp+ad+a  +al ++l  ++ ++++vdah+n +eFa+a
  KIR62194.1 296 FADRLFFVHNPTVTLMRTTADEMAELGRRIGAKAAAATGPTEVFWPDGGVSALDAPGQPFADPAADTACRDALAATLAAHGGTLHRVDAHVNAPEFAAA 394
                 *************************************************************************************************** PP

     UPF0261 396 vaeallel 403
                 +a++l++l
  KIR62194.1 395 MADTLHRL 402
                 ****9987 PP

>> DrsE  DsrE/DsrF-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013      0.57      57     113 ..      14      70 ..       4      71 .. 0.77
   2 ?   -0.2   0.0      0.28   1.2e+03      14      49 ..     316     354 ..     307     388 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
                 S---GGGGGGCGGGT.-EEEEEHHHHHHTT--GGGE-T--EEEE-HHHHHHHHHH-SE CS
        DrsE  57 eknlaellkalkeyg.vklyvCgqaakargldededlgvgvevsglgelaelqnegdr 113
                 ++++a l + l++ g   l+v + +a+ rgl++d     +v+ ++ +++ael++ gdr
  KIR62194.1  14 GPDYAYLAERLRALGvDVLVVDAGTAAPRGLTPDVTA-DEVAEAAGTTVAELLAAGDR 70 
                 455555556666666346889999********86555.69****************98 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.28
                 BSHHHHHHHHHHHHHTTT-EEEEEE-GGGGGGGBS...- CS
        DrsE  14 seaarealelalaaaalghevsvffygdGvllllk...g 49 
                 +e+a ++ ++   aaa+    +vf  + Gv +l +    
  KIR62194.1 316 DEMAELGRRIGAKAAAATGPTEVFWPDGGVSALDApgqP 354
                 555666666655555555677777777777777665321 PP

>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.2   5.2e+03      36      49 ..      51      64 ..      42      85 .. 0.65
   2 ?    4.4   3.6    0.0083        37      31      66 ..     200     235 ..     157     240 .. 0.70
   3 ?    3.1   0.0     0.021        95      24      51 ..     357     384 ..     346     397 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
     PepSY_2 36 vakleaqGykvkki 49
                 + +ea+G +v + 
  KIR62194.1 51 DEVAEAAGTTVAEL 64
                56666666666554 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0083
     PepSY_2  31 preklvakleaqGykvkkievddggcyEvegldkdG 66 
                   e+++a le+ Gy+v  + ++  g   +egl ++G
  KIR62194.1 200 AVEAAKARLEELGYEVLVFHATGAGGRALEGLAQAG 235
                 579999**********99999888777777777776 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.021
     PepSY_2  24 spkadwlpreklvakleaqGykvkkiev 51 
                 +p ad+  r++l a l+a+G +++++++
  KIR62194.1 357 DPAADTACRDALAATLAAHGGTLHRVDA 384
                 78999999*****************998 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   3.6      0.39   1.7e+03      28      64 ..      73     110 ..      52     115 .. 0.76
   2 ?    9.5   0.1   0.00027       1.2      29      58 ..     194     225 ..     167     240 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.39
  GHMP_kinases_C  28 vvgilppeleellealselG.algaklsGaGgGptvfa 64 
                      v  + +   +++  l ++G + g+   G +gG+++++
      KIR62194.1  73 AVTAMGRGAAAVVGRLVAAGrVDGVLAAGGSGGSSIAG 110
                     55566666677788888999999999999999999997 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00027
  GHMP_kinases_C  29 vgilppeleellealselG..algaklsGaGg 58 
                     +g+ +p++e+++  l+elG  +l +  +GaGg
      KIR62194.1 194 FGVTTPAVEAAKARLEELGyeVLVFHATGAGG 225
                     7899**************************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.20s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2926.59
//
Query:       KIR62195.1  [L=247]
Description: hypothetical protein TK50_27740 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-53  181.0   3.1    3.1e-53  180.8   3.1    1.0  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    2.8e-48  164.0   0.3    3.3e-48  163.7   0.3    1.1  1  adh_short      short chain dehydrogenase
      3e-08   33.8   3.5    5.8e-08   32.8   3.3    1.6  2  KR             KR domain
    8.5e-05   22.1   1.0    0.00016   21.2   1.0    1.8  1  Epimerase      NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.043   12.9   0.7      0.074   12.1   0.7    1.3  1  RmlD_sub_bind  RmlD substrate binding domain
      0.057   12.4   0.0      0.077   12.0   0.0    1.2  1  3Beta_HSD      3-beta hydroxysteroid dehydrogenase/isomerase 
      0.092   12.6   1.4       0.21   11.5   0.8    1.8  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.8   3.1   1.2e-56   3.1e-53       6     233 ..      15     245 ..      10     246 .. 0.93

  Alignments for each domain:
  == domain 1  score: 180.8 bits;  conditional E-value: 1.2e-56
                   HHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHH CS
  adh_short_C2   6 IGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdrald 100
                   +Gr i +ala++Ga v+  d++ +a ++++++l++++ ++   ++D  d ++v a+++++++++g++Dilvn ag       pf+e++ +e+++ ld
    KIR62195.1  15 LGRRICRALADQGAAVAGLDISADAaAATTADLTARGATArHDAVDLLDFAAVVAAADRTAAEWGGIDILVNTAGGGLV--RPFAELTLDEWQTQLD 109
                   79***********************8888888888866553599*********************************99..**************** PP

                   HHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSB...STTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHH CS
  adh_short_C2 101 vnlyslfllakaalplmkeg..gsivnlssvgaerv...vpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleel 192
                    nl+s+f  ++a+lp+m +g  g+iv lss++a r+   v n +ay+aaKa++++lt++lA el++ gi+vNa++pg+ +T+  ++   +++ +eel
    KIR62195.1 110 RNLTSVFTSTRAVLPHMLPGgwGRIVSLSSIAAVRGgrlVRNATAYAAAKAGVIGLTKALAIELAETGITVNAIAPGAQATPGRDRD--TPQRREEL 204
                   ***************7777779*********9998755578888**************************************97754..599***** PP

                   HHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 193 earaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                    a++p + lg+p++ a+ ++fL+ + a+yitG tl+ DgG 
    KIR62195.1 205 LAQIPTRTLGQPDDLAASVVFLCQESAAYITGVTLAQDGGH 245
                   ****************************************6 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.7   0.3   1.3e-51   3.3e-48       3     190 ..       6     196 ..       4     201 .. 0.95

  Alignments for each domain:
  == domain 1  score: 163.7 bits;  conditional E-value: 1.3e-51
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeew 101
                 ++vtG ++ +Gr i+++la +Ga v+ +d+s+++++++ + l + ga+a + +vD+ d ++v a+ ++ ++++g++d+Lvn AG   ++pf+el+ +ew
  KIR62195.1   6 AVVTGSGGALGRRICRALADQGAAVAGLDISADAAAATTADLTARGATARHDAVDLLDFAAVVAAADRTAAEWGGIDILVNTAGGGLVRPFAELTLDEW 104
                 89************************************************************************************************* PP

                 HHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB...-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short 102 ervievNltgvflltravlpamlkqssGrIvnvsSvagkvp...vagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                 +  ++ Nlt+vf  travlp+ml + +GrIv  sS+a+  +   v + +aY+A+Ka+v+glt++la ela+tgi+vna+aPG+ +T+ + + 
  KIR62195.1 105 QTQLDRNLTSVFTSTRAVLPHMLPGGWGRIVSLSSIAAVRGgrlVRNATAYAAAKAGVIGLTKALAIELAETGITVNAIAPGAQATPGRDRD 196
                 ************************************9977722256789***********************************99987665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   3.3   2.3e-11   5.8e-08       4     154 ..       7     160 ..       5     189 .. 0.80
   2 ?   -1.4   0.0      0.72   1.8e+03      10      40 ..     163     194 ..     159     238 .. 0.61

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 2.3e-11
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 ++tG  G+LG+ ++r la++ga+   + + +  + ++++a++a l+a+ga+ +  a+D+ d +av a+ ++  ae + i   +++Ag    ++++e+t 
  KIR62195.1   7 VVTGSGGALGRRICRALADQGAA---VAGLD-ISADAAAATTADLTARGATARHDAVDLLDFAAVVAAADRTAAEWGGIDILVNTAGGGLVRPFAELTL 101
                 79*******************96...45555.34456677999******************************************************** PP

                 HHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--T...T-HHHHHHHH CS
          KR 103 edleqvlapKvkGawnLhelled....esldffvlfSSiagllgsa...gqanYaaaNa 154
                 +++++ l   ++ +    +++ +         +v +SSia++ g +     ++Yaaa a
  KIR62195.1 102 DEWQTQLDRNLTSVFTSTRAVLPhmlpGGWGRIVSLSSIAAVRGGRlvrNATAYAAAKA 160
                 ***998887766655444444332322678899*********99762225667888865 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.72
                 SHHHHHHHHHHHHHH.S-EEEEE-SS..--HH CS
          KR  10 GgLGlelarwlaekg.arhlvllsRsaaaded 40 
                  gL ++la  lae g   + +  + +a++ +d
  KIR62195.1 163 IGLTKALAIELAETGiTVNAIAPGAQATPGRD 194
                 56777888888888866666666666544433 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   1.0   6.4e-08   0.00016       2      63 ..       7      74 ..       6     229 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.4e-08
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHH CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkee 63
                +VtG  G +G+ +++al+++g  v gld   +a +    + l       +   +dl+d +a+ ++ +++
  KIR62195.1  7 VVTGSGGALGRRICRALADQGAAVAGLDISADAAAATTAD-LtargataRHDAVDLLDFAAVVAAADRT 74
                8***************************997766655444.3477777777777777777665555443 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.7   2.9e-05     0.074       2      62 ..       5      74 ..       4      78 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.9e-05
                   EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.......T--TTSH..HHHHHHHHHH--SEEEE----- CS
  RmlD_sub_bind  2 kilvtGanGqlGseLakqlaeeglevlaltre.......eldltda..eavaellkeakpdvvvnaAAyt 62
                   + +vtG++G+lG+ + ++la +g++v +l+ +       ++dlt +  +a +++++  + ++vv aA  t
     KIR62195.1  5 RAVVTGSGGALGRRICRALADQGAAVAGLDISadaaaatTADLTARgaTARHDAVDLLDFAAVVAAADRT 74
                   679************************9987777888776666654113445567777777777777555 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     3e-05     0.077       1      65 [.       7      72 ..       7      94 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3e-05
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespell...eelskvnvkkviegDvtdkdkleeale 65
                vvtG++G lGr+++++L + +    v  lD+  +       + + +  ++    +D++d + + +a +
  KIR62195.1  7 VVTGSGGALGRRICRALADQGA--AVAGLDISADAAAAttaDLTARGATARHDAVDLLDFAAVVAAAD 72
                8*****************9995..88888887766543000333333334467788888888888776 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.8   8.1e-05      0.21       4      45 ..       8      50 ..       5      77 .. 0.82
   2 ?   -1.0   0.0      0.55   1.4e+03       7      31 ..     160     186 ..     159     212 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.1e-05
                EE--.SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHH CS
     3HCDH_N  4 viGa.GtmGagiaavfasagleVvlvdiseealekalekieks 45
                v G+ G +G+ i  ++a +g  V  +dis++a+++ ++ ++++
  KIR62195.1  8 VTGSgGALGRRICRALADQGAAVAGLDISADAAAATTADLTAR 50
                6676589**************************9999988874 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.55
                 -SCCH..HHHHHHHHHTT-EEEEE-S- CS
     3HCDH_N   7 aGtmG..agiaavfasagleVvlvdis 31 
                 aG++G  + +a  +a++g++V+ +   
  KIR62195.1 160 AGVIGltKALAIELAETGITVNAIAPG 186
                 566662246778889999999988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.33s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1522.16
//
Query:       KIR62196.1  [L=443]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-29  102.1  12.7    5.7e-29  102.1  12.7    1.4  2  SBP_bac_1  Bacterial extracellular solute-binding protein
    4.7e-23   82.4   7.2    6.8e-23   81.9   7.2    1.2  1  SBP_bac_8  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1  12.7   6.4e-33   5.7e-29       9     299 ..      61     346 ..      53     358 .. 0.75
   2 ?   -3.5   0.0      0.88   7.9e+03     202     230 ..     394     422 ..     384     426 .. 0.65

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 6.4e-33
                 HHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHH...HHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE CS
   SBP_bac_1   9 alqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwia...rlakaglllpldpyvkaylapgvkdaadklsssvlpkilds 104
                  l+ l+a + ++++     +ie+++s++++qk++l  ++ + p  ++a++n+ i     l k+g+l ++ + + +         adkl++   ++i   
  KIR62196.1  61 ELNRLAAGECKAQNDALPLKIEQTPSSNMQQKVQLLAGQDALP-VLFAGGNALINkdgALQKSGQLVDVKKALTD------LGVADKLTPAASDTIDKL 152
                 66666766655555448899***********999999999999.8999998888765555555555555554444......444455544444444443 PP

                 .EE..ES.EEEEE.EEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT...HHCSHHHHS CS
   SBP_bac_1 105 .kv..ly.vPlya.argliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgg...gldnpegvt 195
                  ++  +  +P++    g++YNk++fe+ g+++p tWdel++aa klk++  +p   a g+++++   +   +++ +lg++  +k +    +l++pe+v 
  KIR62196.1 153 yGGgvYPtIPFQYnIEGIFYNKKIFEEQGIAVPATWDELLAAAAKLKAAKITP-FTASGKTGWTISRWVGAYILRDLGPDALKKVADgqaKLTDPEYVR 250
                 33453448****66***************************************.444444444444444455555555555555444566666666666 PP

                 HHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE.....EEEEEE CS
   SBP_bac_1 196 aatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi.....lgaygl 289
                 aa+++ +l      +++++ +g++++d + a+a + +G+aam+++g+w         +++  +++k ++++ +g+ p+Pa++gg ++i      ++ + 
  KIR62196.1 251 AAQAIADLG-----KAGYFVDGVTSVDYDTATANLLNGKAAMMYMGSWL--------LASINDPKKNPLGDAIGFMPVPAVTGGSGSIdqypaNVGAPT 336
                 666666655.....779******************************99........78888999999***********************99999999 PP

                 EEBTTCSTHH CS
   SBP_bac_1 290 aipkgsknpe 299
                 ai+++   pe
  KIR62196.1 337 AISAKQYSPE 346
                 9999988776 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.88
                 HHHHHHHHHHHHHTTEEECSSHHHHHHHH CS
   SBP_bac_1 202 klyavanltkelkgkgaenkdgaaalalf 230
                 ++  ++++++ l++ +a++  +a+a++l+
  KIR62196.1 394 ASTSTVLWFEALFNTKATGDASANAAPLL 422
                 44455666777777777777777777666 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   7.2   7.6e-27   6.8e-23       5     230 ..      69     340 ..      66     354 .. 0.66

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 7.6e-27
                 HHHHH-T.EEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHH...TTSB--GG....GSTTHHH-HHHHHTT....--TS.----EEEE CS
   SBP_bac_8   5 efekktg.vkvnvvtaasndleqklkaalaagtapdidvvwanedalatlae...eglladls....dldnlddltdalaav....gydgklygvPyas 91 
                 e++++++   +++++ +s  ++qk++  + ++ +p  +++ + ++ + +  +   +g l+d++    dl  +d+lt+a+ +      + g +  +P+++
  KIR62196.1  69 ECKAQNDaLPLKIEQTPSSNMQQKVQLLAGQDALP--VLFAGGNALINKDGAlqkSGQLVDVKkaltDLGVADKLTPAASDTidklYGGGVYPTIPFQY 165
                 6678885589999999***********99999998..567777777666655555666666654444333344444433332343144665779****9 PP

                 EEE-EEEEEHHHHHH...S.---BHHHHHHHHHHH..........HHH-SEGG---.GGGGGGTHH.............ETTEE---H......HHH.H CS
   SBP_bac_8  92 etpyvliynkdllek...aedpktwdellaaakkl..........kgkfglpdpas.gwlqaalla.............kdgksldddg....gkdglk 159
                 +  ++++ynk+++e+   a +p+twdellaaa+kl           gk+g++ + + g       +             +d       g    ++++++
  KIR62196.1 166 NI-EGIFYNKKIFEEqgiA-VPATWDELLAAAAKLkaakitpftaSGKTGWTISRWvGA------YilrdlgpdalkkvAD-------GqaklTDPEYV 249
                 96.9***********7777.***************444444333334445555544333......2344344543444433.......2445566899* PP

                 HHHHHHHHHHHTT-EE.....-S..--SSTTTTTSBSEEEE-TTHHHHHH-TTT.....SEEEE.--....S--....EEEEEEE.EEEBT CS
   SBP_bac_8 160 ealellkklkdngkty.....dtgadavsefanGevaftingswdiaaaqkagk.....klgai.vp....kqg....sfaggkg.lavpk 230
                 +a++ +++l ++g+++      ++++a++++ nG++a+++ gsw +a++++ +k      +g++ vp     +g    ++a++   +a+++
  KIR62196.1 250 RAAQAIADLGKAGYFVdgvtsVDYDTATANLLNGKAAMMYMGSWLLASINDPKKnplgdAIGFMpVPavtgGSGsidqYPANVGApTAISA 340
                 **************887777446799************************65443122145555445443311133335555543255555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2852.30
//
Query:       KIR62197.1  [L=171]
Description: hypothetical protein TK50_27840 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-17   62.1   0.3    7.1e-17   60.9   0.3    1.6  1  Sigma70_r2    Sigma-70 region 2
      4e-14   51.9   0.2    1.1e-13   50.4   0.2    1.8  1  Sigma70_r4    Sigma-70, region 4
    3.2e-11   42.7   0.3    7.5e-11   41.5   0.3    1.7  1  Sigma70_r4_2  Sigma-70, region 4
      5e-05   23.3   1.9    9.1e-05   22.4   1.9    1.6  1  Sigma70_ECF   ECF sigma factor
    0.00033   20.4   0.3    0.00083   19.1   0.3    1.9  1  DUF742        Protein of unknown function (DUF742)
    0.00035   20.4   2.9    0.00062   19.6   0.1    2.7  3  MarR_2        MarR family
    0.00038   20.5   0.4      0.001   19.2   0.1    1.9  2  DprA_WH       DprA winged helix domain
     0.0063   16.6   1.2       0.15   12.2   0.0    3.1  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.022   14.3   0.0      0.078   12.5   0.0    1.9  2  HTH_24        Winged helix-turn-helix DNA-binding
      0.033   14.3   0.1       0.15   12.2   0.0    2.2  2  Sigma70_r3    Sigma-70 region 3
      0.043   13.6   0.3      0.043   13.6   0.3    2.2  2  HTH_23        Homeodomain-like domain
      0.085   11.7   2.0       0.13   11.1   2.0    1.3  1  MscS_TM       Mechanosensitive ion channel inner membrane dom
       0.18   11.7   0.0       0.44   10.5   0.0    1.7  1  HTH_5         Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.3   5.1e-20   7.1e-17       1      69 [.      14      83 ..      14      85 .. 0.96

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 5.1e-20
                HHHHHHHHHHHHHHHC.T-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSS CS
  Sigma70_r2  1 lverylplvkrlarrl.lgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrr 69
                l++++   + r++r l +g++++aeD+vQe+++r+wr+++++ p+ g s + wl+++ar+++id+ R+r+
  KIR62197.1 14 LLAAHGTPLARFVRGLtMGNRHTAEDVVQETLIRAWRHLDSLPPDSGGSSRRWLFTVARRLVIDEARRRQ 83
                57889999***********************************************************997 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.2   8.2e-17   1.1e-13       2      50 .]     118     166 ..     117     166 .. 0.96

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 8.2e-17
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                  a+L++++r+vl  ++++++T  EI+++lgi+ ++Vr++  +Alr LR+
  KIR62197.1 118 VARLSADHRRVLHEVYFRDRTVDEIAAELGIPVGTVRSRVYYALRALRA 166
                 689********************************************95 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.3   5.4e-14   7.5e-11       2      54 .]     112     164 ..     111     164 .. 0.97

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 5.4e-14
                   HHHHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   2 qalrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   qalr+a+a+L+ + r+++   y+ + + +EIA++lgi++gtV+sr++ A+++L
    KIR62197.1 112 QALRQAVARLSADHRRVLHEVYFRDRTVDEIAAELGIPVGTVRSRVYYALRAL 164
                   89***********************************************9987 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   1.9   6.6e-08   9.1e-05      77     176 ..      65     161 ..      13     170 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 6.6e-08
  Sigma70_ECF  77 alaaeamrrilidhaRrrkrqkRGGdvvraeldeeedsvdsdspdelleLdealerlls.ldpeqarlvelrkleGlsveEiAeklgvskrtverrla 173
                  + + ++ rr +id+aRrr+++    +v  ++ d+e   v  d++       +al +  + l+ + +r++   ++   +v+EiA++lg+   tv+ r  
   KIR62197.1  65 RWLFTVARRLVIDEARRRQAR--PVEVAAQA-DQEY-GVTGDETAGTAIASQALRQAVArLSADHRRVLHEVYFRDRTVDEIAAELGIPVGTVRSRVY 158
                  5677899*********98775..44554444.3333.23334444444445667666666889999999999*********************98887 PP

  Sigma70_ECF 174 laR 176
                  +a 
   KIR62197.1 159 YAL 161
                  764 PP

>> DUF742  Protein of unknown function (DUF742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.3     6e-07   0.00083      33      74 ..     113     155 ..      23     158 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 6e-07
      DUF742  33 agapeaarlqpehrailr.LcreplsVaelaAelklPvgvvrv 74 
                 a +   arl+ +hr++l+    + ++V e+aAel +Pvg+vr 
  KIR62197.1 113 ALRQAVARLSADHRRVLHeVYFRDRTVDEIAAELGIPVGTVRS 155
                 222225899999999997255569*****************95 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.6   2.2e+03       4      23 ..      69      85 ..      68      94 .. 0.59
   2 ?    0.9   0.1       0.3   4.2e+02      32      47 ..     108     123 ..     104     125 .. 0.81
   3 !   19.6   0.1   4.5e-07   0.00062       3      42 ..     121     157 ..     119     163 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.6
                -HHHHHHHHHHHCTTTSEEE CS
      MarR_2  4 tpaqarvLaaLgrrpgrdlt 23
                t+a + v+ + +rr     +
  KIR62197.1 69 TVARRLVIDEARRRQA---R 85
                6667777777777764...3 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.3
                 TSSHHHHHHHHHHHHH CS
      MarR_2  32 glsksavsrilkrLva 47 
                  +  +a+ ++++rL+a
  KIR62197.1 108 AIASQALRQAVARLSA 123
                 5778999999999987 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 4.5e-07
                 --HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHH CS
      MarR_2   3 ltpaqarvLaaLgrrpgrdltvgelarrlglsksavsril 42 
                 l+  ++rvL++++ r++   tv e+a++lg++ ++v  ++
  KIR62197.1 121 LSADHRRVLHEVYFRDR---TVDEIAAELGIPVGTVRSRV 157
                 67789***********6...***********999997765 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.2   8.5e+03      13      26 ..       7      20 ..       3      27 .. 0.63
   2 !   19.2   0.1   7.2e-07     0.001       4      43 ..     115     154 ..     109     157 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.2
     DprA_WH 13 lerrvLaaLgpePv 26
                +  r+ ++L++  +
  KIR62197.1  7 TDTRIRELLAAHGT 20
                45666667666544 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 7.2e-07
     DprA_WH   4 ppaepplddlerrvLaaLgpePvhvDqLvrrtglpaaevs 43 
                 ++a + l++++rrvL  + +  ++vD++++++g+p+++v 
  KIR62197.1 115 RQAVARLSADHRRVLHEVYFRDRTVDEIAAELGIPVGTVR 154
                 4667789******************************996 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.18   2.5e+02      32      50 ..      45      61 ..      43      66 .. 0.83
   2 !   12.2   0.0   0.00011      0.15      11      32 ..     135     156 ..     115     167 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.18
      HTH_28 32 WikryeegGiagLvprrrr 50
                +i+++++  +++L p +++
  KIR62197.1 45 LIRAWRH--LDSLPPDSGG 61
                79*****..******8774 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00011
      HTH_28  11 aGhsvreaArelgisrrtvyrW 32 
                 + ++v+e+A+elgi   tv++ 
  KIR62197.1 135 RDRTVDEIAAELGIPVGTVRSR 156
                 678***********99999875 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.3     6e+03      29      41 ..     109     121 ..     107     124 .. 0.74
   2 ?   12.5   0.0   5.7e-05     0.078      19      38 ..     138     157 ..     136     157 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.3
      HTH_24  29 lSpstvnrrlkrL 41 
                 + ++++++ + rL
  KIR62197.1 109 IASQALRQAVARL 121
                 6778888888888 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.7e-05
      HTH_24  19 sqreLAerlglSpstvnrrl 38 
                 +  e+A +lg++++tv+ r+
  KIR62197.1 138 TVDEIAAELGIPVGTVRSRV 157
                 678**************997 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.5   3.5e+03      18      29 ..      81      92 ..      75      97 .. 0.80
   2 ?   12.2   0.0   0.00011      0.15      16      39 ..     132     155 ..     114     164 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.5
                SSXXXHHHHHHH CS
  Sigma70_r3 18 grePtpeEiAee 29
                 r++ p E+A++
  KIR62197.1 81 RRQARPVEVAAQ 92
                588999999986 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00011
                 HHSSXXXHHHHHHHHTXXHHHHHH CS
  Sigma70_r3  16 elgrePtpeEiAeeLglseekVre 39 
                    r+ t++EiA+eLg+++  Vr+
  KIR62197.1 132 VYFRDRTVDEIAAELGIPVGTVRS 155
                 5557779*************9997 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       2.5   3.5e+03       7      25 ..      72      91 ..      66      93 .. 0.61
   2 ?   13.6   0.3   3.1e-05     0.043       7      37 ..     115     157 ..     110     167 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.5
      HTH_23  7 Rlrillllae.GlsvreIAr 25
                R +++  +++  +++ e+A+
  KIR62197.1 72 RRLVIDEARRrQARPVEVAA 91
                55566666655666666665 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.1e-05
      HTH_23   7 Rlrillllae...........GlsvreIAreLgvsrrTvy.rw 37 
                 R+ +++l a+             +v eIA+eLg++  Tv+ r+
  KIR62197.1 115 RQAVARLSADhrrvlhevyfrDRTVDEIAAELGIPVGTVRsRV 157
                 556666666444444445556789***************9555 PP

>> MscS_TM  Mechanosensitive ion channel inner membrane domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.0   9.6e-05      0.13     246     302 ..      63     112 ..      61     130 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.6e-05
     MscS_TM 246 alRwllvarRRlayerakekRaaalaqrakeeeeeeekkesaeveepeldleaisaQ 302
                  +Rwl+  +RRl +++a++++a   + +a++++e         v  +e +  ai++Q
  KIR62197.1  63 SRRWLFTVARRLVIDEARRRQARPVEVAAQADQE--YG-----VTGDETAGTAIASQ 112
                 58****************5555444333333333..22.....23333333333333 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00032      0.44      14      33 ..     135     154 ..     126     167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00032
                 SSEEHHHHHHHHTS-HHHHH CS
       HTH_5  14 gelcvcelaeelglsqstvS 33 
                 + ++v e+a+elg++ +tv+
  KIR62197.1 135 RDRTVDEIAAELGIPVGTVR 154
                 679*************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1234.79
//
Query:       KIR62198.1  [L=205]
Description: lactate utilization protein C [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-23   82.3   0.1    4.9e-21   75.3   0.1    2.1  2  LUD_dom     LUD domain
  ------ inclusion threshold ------
        0.2   10.5   0.0       0.24   10.2   0.0    1.0  1  ABC_tran_2  Putative ATP-binding cassette


Domain annotation for each model (and alignments):
>> LUD_dom  LUD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0016        14       3      39 ..      41      76 ..      39      95 .. 0.87
   2 !   75.3   0.1   5.5e-25   4.9e-21      83     188 ..     103     198 ..      95     199 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0016
     LUD_dom  3 efienleangaevyyaktaeealelilellkeksvvs 39
                 ++++l+   a+v+++++ +++++ + e+l  + vv+
  KIR62198.1 41 VLADRLTDYRATVHRCAD-ADVARVVDEVLGGRRVVV 76
                67889999**********.**********99988864 PP

  == domain 2  score: 75.3 bits;  conditional E-value: 5.5e-25
     LUD_dom  83 ltadvgitganfaiAetGtlvlvdnegnr.raltflpkvhivvvginkivpdledavkrlktaprnatrlqkktpyvsfisgpsrtadielvlvygvhg 180
                 +++d  +t a +a+AetGt+vl   + ++ r +t+lp+vh++v+ ++++v+++ da++rl        r       +++isgps t diel  v+gvhg
  KIR62198.1 103 AAVDGVVTAAAVAVAETGTIVLDGAPDQGrRVVTLLPDVHVCVLRADQVVATVPDALARLDP------R-----RPLTWISGPSATSDIELDRVEGVHG 190
                 6788899*******************************************************......4.....3689********************* PP

     LUD_dom 181 pkrihvil 188
                 p+++hv+l
  KIR62198.1 191 PRNLHVVL 198
                 *******8 PP

>> ABC_tran_2  Putative ATP-binding cassette
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   2.7e-05      0.24     188     236 ..      52     101 ..      34     124 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 2.7e-05
  ABC_tran_2 188 speellekdv.evldqlleklrvsefpflPsaWltrgllawaegnlseal 236
                 +  ++ ++dv  v+d++l+  rv + p lP +Wl  g++a ++  l+ a 
  KIR62198.1  52 TVHRCADADVaRVVDEVLGGRRVVVPPGLPPHWLPPGVTAVTDDGLDAAR 101
                 556778999999*****************************998776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1391.20
//
Query:       KIR62199.1  [L=496]
Description: glycoside hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-80  268.9   0.0    6.6e-80  268.5   0.0    1.2  1  Glyco_hydro_43  Glycosyl hydrolases family 43
    7.1e-27   94.4   0.0      5e-26   91.7   0.0    1.9  1  GH43_C2         Beta xylosidase C-terminal Concanavalin A-lik
  ------ inclusion threshold ------
      0.092   13.0   1.7         13    6.5   0.1    3.4  3  Reg_prop        Two component regulator propeller


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.5   0.0   1.1e-83   6.6e-80      15     288 .]       1     259 [.       1     259 [. 0.96

  Alignments for each domain:
  == domain 1  score: 268.5 bits;  conditional E-value: 1.1e-83
                     EEEETTCEEEEEEEBTEESEEEEEEESSSSSCEEEEECEESTTTCSTTTE.ECT...EEEEEEEETTEEEEEEEEEETTCCCSEEEEEEESSTTS CS
  Glyco_hydro_43  15 ilrvgedyYlvtstfewfpglrifhSkdLvnWkqvgrvlerrsqlsmkgk.nas...WAPeiskhdgkyylyytatkkgeakqgifvvtadspeG 105
                     ++rvg+dyYlv+s+fe+fpg+++ hS+dLvnW+qvg+vl+r+sql+++ + +as   +AP+i++hdg++++++t+        +  +vta++p+G
      KIR62199.1   1 MCRVGDDYYLVCSSFEYFPGVPLLHSRDLVNWRQVGNVLDRPSQLELPADtPASqgvYAPTIRHHDGRFWVVTTN----VSLGRHLIVTAQDPAG 91 
                     79********************************************96651555999*****************3....44556899******** PP

                     --EECEESSCSTSSECEEEEEEETTSEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEEEEEEEEECGCCTCTTBBEEEEEEEEETTEEEEEEEES CS
  Glyco_hydro_43 106 pwsdpiklktsgssgiDpslfedddGkkYlvwgqwdkreghseiylaeldddtlklkgektklikagtelkglkvtEGPhlykrdgyyYLlaaeg 200
                     pwsdp++l   +   +Dpsl +dd+G+++l  ++ ++          ++d+dt  + + + + +++gt   g++++E+Phly++dg++YLl +eg
      KIR62199.1  92 PWSDPVYL---DLPHVDPSLAWDDEGNCWLTTSGVKSY---------RIDPDTGRVLEGP-IPLWSGT---GGQYPEAPHLYRIDGWWYLLLSEG 170
                     ********...9**********************7776.........*************.*******...************************ PP

                     TSSTTEEEEEEEESSTTSGGEEECTCCSEE.TBTTSTSEEEEEEEEEE-TTSSEEEEEEEESC..CTTCCGTTSSEEEEEEEEEETTSEE CS
  Glyco_hydro_43 201 gtgseyavvvarsksllgPyewkkknpiltsrspeepiqgpGHaslvetpdgewyivyhagrp..egrglytlgRetllqrvewkaDGwp 288
                     gt + +av+vars+s++gP+  +++npilt+r ++ p+q +GHa+lv++pdg+w++v ++ r   + ++++ lgRet+l +v+w  DGwp
      KIR62199.1 171 GTHTGHAVSVARSRSPRGPFAPAPTNPILTHRGSNLPVQATGHADLVQSPDGSWWMVLLGIRAkgQWPPYHVLGRETFLVPVRWV-DGWP 259
                     ***************************************************************88889*****************.***8 PP

>> GH43_C2  Beta xylosidase C-terminal Concanavalin A-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.0   8.4e-30     5e-26       1     202 []     288     493 ..     288     493 .. 0.76

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 8.4e-30
     GH43_C2   1 rddFdsdkLglqWqwlrnPkdedwyslterpgyLrLkgreslsskeapsllarRqqafsftattklefepekegeeAGLvvyqneyhyyslevtkdekg 99 
                 rddFd   L++ W++ r   d  w slt+rpg+L+L+++ +  ++   +++a Rq++++++a+++l+  p   g +AGL++  +e h+y+lev++  + 
  KIR62199.1 288 RDDFDAAVLAPGWVSPRSRPDAAW-SLTARPGWLTLNATGATLDRAGATIVATRQRHHDCRASARLD--PG--GGTAGLTIRIDEAHHYDLEVSA--GR 379
                 7*****************997888.**************98889999********************..44..689******************5..46 PP

     GH43_C2 100 krvlrlvkadnge.................akeelkeekvplqtevkevyLrleveedkak.fsysydgkeweeigeeldgtllsdefaeggFtGafvG 180
                  rv+  v   ++                   +++l  + v++  +++     + v++++++ + + +++++   + +eldg++ls+e+a  gFtG ++G
  KIR62199.1 380 VRVVGRVGPFRQVfaelavppgplvltiatRTHDLRPPTVTCAADLSAGAAPFGVRAAACDmVAFEVQTSDGPRVLAELDGRYLSTEVA-AGFTGRVIG 477
                 6777555555555223333444333222111222222222222222333333444455655378999**********************.********* PP

     GH43_C2 181 lfatgngkessgyAdFdwfeye 202
                 ++ t         A Fdwf+y+
  KIR62199.1 478 MYVTEG------SAAFDWFDYR 493
                 ***997......79******96 PP

>> Reg_prop  Two component regulator propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.016        98      14      24 .]      65      75 ..      54      75 .. 0.84
   2 ?    6.5   0.1    0.0021        13       9      24 .]     107     122 ..      99     122 .. 0.86
   3 ?   -1.3   0.1      0.73   4.4e+03       9      20 ..     215     226 ..     213     227 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.016
                TTSCEEEEESS CS
    Reg_prop 14 sdGrlWvGteg 24
                +dGr Wv t++
  KIR62199.1 65 HDGRFWVVTTN 75
                7******9986 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0021
                 EEEE-TTSCEEEEESS CS
    Reg_prop   9 aileDsdGrlWvGteg 24 
                 ++++D +G+ W+ t+g
  KIR62199.1 107 SLAWDDEGNCWLTTSG 122
                 899**********975 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.73
                 EEEE-TTSCEEE CS
    Reg_prop   9 aileDsdGrlWv 20 
                 ++++ +dG  W+
  KIR62199.1 215 DLVQSPDGSWWM 226
                 68899***9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3294.86
//
Query:       KIR62200.1  [L=461]
Description: Cro/Cl family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-67  225.6   0.0    4.6e-67  224.7   0.0    1.4  1  DUF2083         Predicted transcriptional regulator (DUF2083)
    2.9e-19   69.2   0.9    7.1e-19   67.9   0.9    1.7  1  Peptidase_M78   IrrE N-terminal-like domain
    1.6e-11   44.4   0.0    1.6e-11   44.4   0.0    3.7  4  HTH_31          Helix-turn-helix domain
    5.9e-11   42.2   0.0    7.9e-10   38.6   0.0    2.7  3  HTH_3           Helix-turn-helix
    2.1e-09   37.2   0.0    5.8e-09   35.8   0.0    1.7  1  HTH_19          Helix-turn-helix domain
    7.2e-06   25.8   0.6      3e-05   23.8   0.1    2.2  2  HTH_25          Helix-turn-helix domain
    0.00014   22.2   0.0    0.00044   20.6   0.0    1.8  2  HTH_26          Cro/C1-type HTH DNA-binding domain
     0.0029   17.5   0.0     0.0083   16.1   0.0    1.8  1  HTH_37          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.079   12.5   0.8       0.19   11.3   0.1    2.0  2  Sigma70_r4      Sigma-70, region 4
       0.16   11.6   0.1        0.4   10.3   0.1    1.7  1  HTH_24          Winged helix-turn-helix DNA-binding
       0.17   11.8   0.0       0.94    9.4   0.0    2.2  2  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox


Domain annotation for each model (and alignments):
>> DUF2083  Predicted transcriptional regulator (DUF2083)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.7   0.0   2.8e-70   4.6e-67       1     157 []     301     457 ..     301     457 .. 0.99

  Alignments for each domain:
  == domain 1  score: 224.7 bits;  conditional E-value: 2.8e-70
     DUF2083   1 tLqrpgargvPfffvrvDrAGniskrasatgfqfarfggaCPlwnvheafetpgrilvqlaelpdgeryltiartvekesgafgepekrfaialgceik 99 
                 tLqrp argvPf fvrvDrAGn+skr+satgf+f+ +gg+CPlwnv+eaf++pgr++vq+a +pdg+ryl+iart+++++g++++p k +ai+lgce++
  KIR62200.1 301 TLQRPRARGVPFSFVRVDRAGNLSKRQSATGFPFSLTGGTCPLWNVYEAFSSPGRVVVQVAAMPDGQRYLWIARTITRHHGGYNQPGKVYAIGLGCETR 399
                 8************************************************************************************************** PP

     DUF2083 100 haeklvyadgldleekaaatpiGvgCrlCeredCaqRafpplgrelevdenerglspy 157
                 hae+lvy++g+dl +++a+t iG+gC++Cer++C+qRa++p++ +l++den+++++py
  KIR62200.1 400 HAERLVYSAGIDLYAADATTSIGPGCKTCERMTCPQRAAAPITGRLDLDENRSTFIPY 457
                 ******************************************************9998 PP

>> Peptidase_M78  IrrE N-terminal-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.9   4.4e-22   7.1e-19       1     123 []     176     300 ..     176     300 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 4.4e-22
  Peptidase_M78   1 aerlgidvlaldlgakdldgfrfdnsetkvivlnsnhsptrqrftlaHElgHlllhherdkf..reegdskaqerlere..anafAaelllPeeaf 92 
                    aer+g++v++ d++      +r+ ++ t++++l+ +++  +++  +a +++ l++ + +d+   +e +d+ ++++l r   an+fAa+l+lP+e f
     KIR62200.1 176 AERHGVQVRRDDATLLGDELHRYRPQ-TRTLHLSTSLRAGQEAMRMAAQIALLEFADVIDEIveEERFDDVQTQILTRVglANYFAAALILPYERF 270
                    79***********************9.**********************************9*999************999*************** PP

  Peptidase_M78  93 lalaatqrkdleerlaeyfgVSkeavavrls 123
                    la+a+++r+d+++ l ++f +  e+v++rls
     KIR62200.1 271 LAAAEQRRYDIDL-LTQHFAMGWETVCHRLS 300
                    ************9.***************96 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   9.9e-15   1.6e-11       3      60 ..       7      63 ..       6      66 .. 0.96
   2 ?   -1.5   0.0         2   3.3e+03      40      52 ..      82      94 ..      77     106 .. 0.80
   3 ?    0.2   0.4      0.62     1e+03      45      62 ..     151     168 ..     115     172 .. 0.81
   4 ?   -1.9   0.2       2.7   4.4e+03       2      11 ..     191     200 ..     190     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 9.9e-15
      HTH_31  3 GalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpae 60
                Ga+Lr++Re + Lsq ++A++l++s+s+l+++E  +r+  +  vl ++ +++g+dp  
  KIR62200.1  7 GARLRRMREDRALSQSHLARLLNISPSYLNQIEHDARP-LTVPVLMRITEVFGVDPTV 63
                99***********************************7.****************975 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2
      HTH_31 40 grpspavlealar 52
                grps a+l+ la+
  KIR62200.1 82 GRPSVADLTELAT 94
                5899999999985 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.62
      HTH_31  45 avlealaralgldpaera 62 
                 ++ e+la a gl + e++
  KIR62200.1 151 EAAERLAAAIGLRRGEVR 168
                 577888888888777765 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 2.7
      HTH_31   2 LGalLralRe 11 
                 LG++L+++R 
  KIR62200.1 191 LGDELHRYRP 200
                 8999999995 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   4.9e-13   7.9e-10       1      54 [.      10      63 ..      10      64 .. 0.97
   2 ?   -0.4   0.0      0.76   1.2e+03      13      27 ..     115     128 ..     107     129 .. 0.79
   3 ?   -2.4   0.0       3.1     5e+03      13      25 ..     154     166 ..     153     169 .. 0.75

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 4.9e-13
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvslde 54
                l+++R+ + lsq  LA++l++s+s++++iE + r  ++ +l ++ +++gv+++ 
  KIR62200.1 10 LRRMREDRALSQSHLARLLNISPSYLNQIEHDARPLTVPVLMRITEVFGVDPTV 63
                899************************************************975 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.76
                 HHHHHHHTSSHHHHH CS
       HTH_3  13 eeLAeklGvsrstis 27 
                 e+LAe+lG  r ti 
  KIR62200.1 115 EQLAELLG-DRETIG 128
                 89*****9.888876 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.1
                 HHHHHHHTSSHHH CS
       HTH_3  13 eeLAeklGvsrst 25 
                 e LA+++G+ r  
  KIR62200.1 154 ERLAAAIGLRRGE 166
                 5689999988765 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   3.6e-12   5.8e-09       1      59 [.       7      64 ..       7      68 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3.6e-12
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyl 59
                G rL+++Re + l+q  la+ l is+s++++iE++ +  ++ ++l +i e +g+d++ +
  KIR62200.1  7 GARLRRMREDRALSQSHLARLLNISPSYLNQIEHDAR-PLTVPVLMRITEVFGVDPTVF 64
                89*********************************98.899**************9865 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   1.9e-08     3e-05       1      33 [.       9      41 ..       9      50 .. 0.96
   2 ?   -1.4   0.0       1.3   2.2e+03      31      51 ..     238     258 ..     232     269 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.9e-08
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHCT CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEed 33
                rLr+ Re r ls   +a+ ++I+++yl ++E d
  KIR62200.1  9 RLRRMREDRALSQSHLARLLNISPSYLNQIEHD 41
                79*****************************98 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.3
                 HCT--TTSS-HHHHHHHHHHH CS
      HTH_25  31 EeddfdalpepvylrgylrnY 51 
                 Ee++fd+   ++ +r  l nY
  KIR62200.1 238 EEERFDDVQTQILTRVGLANY 258
                 999****99999999888877 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.7e-07   0.00044       1      54 [.       9      61 ..       9      63 .. 0.96
   2 ?   -2.9   0.0         6   9.7e+03      15      29 ..     155     169 ..     153     176 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.7e-07
      HTH_26  1 kLrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctp 54
                +Lr++  dr +++s Lar ++is + l+ + ++ ++ ++  +L++i +++g++p
  KIR62200.1  9 RLRRMREDRALSQSHLARLLNISPSYLNQIEHD-ARPLTVPVLMRITEVFGVDP 61
                79******************************9.599***************99 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6
      HTH_26  15 eLargtgisaatlsr 29 
                 +La ++g+ ++ +  
  KIR62200.1 155 RLAAAIGLRRGEVRS 169
                 799999999987765 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.1e-06    0.0083      21      71 ..       8      57 ..       2      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.1e-06
                HHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHT CS
      HTH_37 21 laiaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltal 71
                +++++++e+r lsqs +a+ll+i+ + +++++  + + +++  L+++ + +
  KIR62200.1  8 ARLRRMREDRALSQSHLARLLNISPSYLNQIEH-DARPLTVPVLMRITEVF 57
                5699***************************95.88888888888876655 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00012      0.19      15      44 ..      13      42 ..       9      43 .. 0.89
   2 ?   -2.5   0.1       2.4   3.9e+03      25      39 ..     155     169 ..     150     175 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                HHHTTT--HHHHHHHHTS-HHHHHHHHHHH CS
  Sigma70_r4 15 lrfgeglTleEIgerlgiSrerVrqiekrA 44
                +r ++ l+++ +++ l+iS +   qie++A
  KIR62200.1 13 MREDRALSQSHLARLLNISPSYLNQIEHDA 42
                55599***********************99 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.4
                 HHHHHHTS-HHHHHH CS
  Sigma70_r4  25 EIgerlgiSrerVrq 39 
                  +++  g+ r+ Vr+
  KIR62200.1 155 RLAAAIGLRRGEVRS 169
                 567788888888887 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00025       0.4      10      36 ..      11      37 ..      10      38 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00025
      HTH_24 10 elLqknprisqreLAerlglSpstvnr 36
                + ++++  +sq+ LA+ l++Sps +n+
  KIR62200.1 11 RRMREDRALSQSHLARLLNISPSYLNQ 37
                56788889***************9886 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00058      0.94      10      38 ..      20      48 ..      16      60 .. 0.77
   2 ?   -1.6   0.0       1.5   2.5e+03      12      29 ..     154     171 ..     151     182 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00058
  YdaS_antitoxin 10 gqkaLAealgvsqqaVsqWlkgkkqvpae 38
                    +q++LA++l++s++  +q  ++ +++++ 
      KIR62200.1 20 SQSHLARLLNISPSYLNQIEHDARPLTVP 48
                    8*****************98776664433 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.5
  YdaS_antitoxin  12 kaLAealgvsqqaVsqWl 29 
                      +LA a+g  +  V+  l
      KIR62200.1 154 ERLAAAIGLRRGEVRSAL 171
                     578888888887776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3232.84
//
Query:       KIR62201.1  [L=398]
Description: hypothetical protein TK50_28025 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-45  154.7   0.0    3.5e-45  154.5   0.0    1.0  1  Aminotran_5   Aminotransferase class-V
  ------ inclusion threshold ------
      0.018   14.5   0.1      0.029   13.8   0.1    1.3  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.5   0.0     4e-49   3.5e-45       3     371 .]      22     385 ..      20     385 .. 0.95

  Alignments for each domain:
  == domain 1  score: 154.5 bits;  conditional E-value: 4e-49
                  EBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGG CS
  Aminotran_5   3 ldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehha 100
                  l sa+++    +V+d++  ++++  + +    +++++ ++  +ee+ +  a+l++a+  eei    ++++++ +++ +l  +l++  +++v ++ + +
   KIR62201.1  22 LNSAGSALPTVAVVDEVVAHLRREETEG---GYEAAAAVAGRIEEVYASAARLVGARA-EEIALSDSASTGLRVIVDAL--RLDATSRVLVARSTYVS 113
                  678999999999********99888877...899999999*****************6.********************..59*************** PP

                  GTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--.TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEE CS
  Aminotran_5 101 nlvpwqelakrtgakvkvipldeegeldldeleklln.ektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflaf 197
                    +    l ++tga+++v+p  ++g +dld+le +l+    ++v++++v +++G ++p  +ig+l +++ga++l+Da+q+vg+ +idv+++g+D l+ 
   KIR62201.1 114 HALHLLSLTRETGAELVVLPSGPDGAVDLDRLERALTgGPRDVVCVAQVPTSSGLVEPARDIGALTRRSGAVYLLDATQSVGQLRIDVDEIGCDALVT 211
                  ************************************945567******************************************************** PP

                  ETTT.TTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCTS CS
  Aminotran_5 198 sghK.llgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlksl 294
                  +g K l +P G+G+ y r + l +l p+ +          +++t+a + ++fe     vag  glg al  l + g+ea e++ ++  ++l+ +l+++
   KIR62201.1 212 TGRKfLRAPRGTGFAYLRGDFLDRLTPVAPDVRGAVWTGTHQWTLAPTARRFETWESSVAGRLGLGVALTQLLDRGVEATEAYLTACGARLRRGLAAI 309
                  ****999*********************999887777777*************88899**************************************** PP

                  TTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEE.E-TTTHHHHHHTT.S-EEEEE--TTS-HHHHHHH CS
  Aminotran_5 295 pgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrs.GhhcaqplmkrlalegtvRaSlyiynteeevdrl 371
                  + v++  +d+   r++iv+f+++g+ ++ v + L+ +g+   s   ++ q  + +++++++vRaS ++yn  +++d+l
   KIR62201.1 310 DRVTV--QDPPASRSGIVTFTVDGLGSDAVSRRLAVRGVRTVSvPASHGQWDLGLRGVPAVVRASVHVYNNDADLDAL 385
                  *****..5789***************************98777577777888999********************987 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   3.2e-06     0.029      95     151 ..       4      63 ..       1      75 [. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.2e-06
                   S-EEEE-HHHHHHHHHHHHHHHHHHHT.GEEEEEE-TTSHHHHHHHHHHHHHHHTT-..G CS
  Peripla_BP_1  95 vPcvipddtqageestqkLiaeghkrp.iallegpesaltakervqGflaalaeaGl..e 151
                   v++++  + ++g +   +L ++g   p +a++ +   +l ++e  +G++aa a+aG+  e
    KIR62201.1   4 VDVARERAQTVGVRHAHHLNSAGSALPtVAVVDEVVAHLRREETEGGYEAAAAVAGRieE 63 
                   888888899************************************************533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3027.57
//
Query:       KIR62202.1  [L=234]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-24   87.1  11.0    2.5e-24   86.1  11.0    1.5  1  FCD             FCD domain
      4e-19   68.0   0.2      4e-19   68.0   0.2    2.3  3  GntR            Bacterial regulatory proteins, gntR family
    5.2e-05   23.1   0.2    0.00015   21.7   0.0    1.9  2  HTH_Crp_2       Crp-like helix-turn-helix domain
    0.00014   21.3   0.1    0.00055   19.4   0.0    2.0  2  HTH_24          Winged helix-turn-helix DNA-binding
     0.0015   18.3   0.3     0.0074   16.2   0.0    2.2  2  MarR_2          MarR family
     0.0026   17.6   0.0     0.0085   16.0   0.0    1.9  1  HTH_11          HTH domain
     0.0028   18.0   0.1      0.059   13.7   0.0    2.3  2  FaeA            FaeA-like protein
     0.0039   17.0   0.0     0.0085   16.0   0.0    1.6  1  TrmB            Sugar-specific transcriptional regulator TrmB
     0.0041   17.0   0.0      0.014   15.3   0.0    1.9  2  MarR            MarR family
  ------ inclusion threshold ------
      0.015   15.1   1.4       0.11   12.4   0.0    2.9  3  HTH_IclR        IclR helix-turn-helix domain
      0.025   14.8   0.0       0.06   13.6   0.0    1.6  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.028   14.8   0.0       0.13   12.6   0.0    2.1  2  Rrf2            Transcriptional regulator
      0.031   14.3   0.0       0.65   10.1   0.0    2.7  2  HTH_29          Winged helix-turn helix
      0.033   12.6   0.1      0.055   11.8   0.0    1.5  2  DUF505          Protein of unknown function (DUF505)
      0.053   13.7   6.8       0.15   12.2   0.0    3.4  3  HTH_28          Helix-turn-helix domain
      0.071   12.7   0.0       0.14   11.7   0.0    1.5  1  HTH_CodY        CodY helix-turn-helix domain
      0.072   13.1   0.0       0.16   11.9   0.0    1.6  1  HTH_36          Helix-turn-helix domain
      0.072   11.0   0.0      0.095   10.6   0.0    1.1  1  FSIP2           Fibrous sheath-interacting protein 2
        9.1    7.0  12.4        2.4    8.8   7.7    2.3  2  ABATE           Putative stress-induced transcription regulat


Domain annotation for each model (and alignments):
>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1  11.0   2.6e-27   2.5e-24       1     123 [.      83     213 ..      83     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 2.6e-27
         FCD   1 dlyelRalLEpeaarlaarratdadlaeleellealeeaaaegdlee......faeadraFHralaeaagnpvlaelleelrarlrr..lrrlalsspe 91 
                 + ye+Ra LE++aa++a+rr+t +++++l+++++++ + + +g+ +         + +  FH+++a+++gn++l+++++++++ + r   ++l   + +
  KIR62202.1  83 EAYEVRAELEALAAARAVRRITRDQIDQLRAANQEMYDLSVAGRGDGvpaqhdHRRSNDVFHTLIASISGNARLSKAINDINETFPRnvSAQLIVNDSR 181
                 679*********************************999985554445466669*********************************988888888*** PP

         FCD  92 rleeslaeHraildAirardadaAraamrrHl 123
                 +++e+++eH++il+A++++da++A++ mr+H+
  KIR62202.1 182 HRDENFQEHERILEALADGDAQRAADQMREHV 213
                 *******************************7 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.2   4.2e-22     4e-19       3      64 .]      13      73 ..      11      73 .. 0.96
   2 ?   -2.0   0.2       3.1   2.9e+03      44      57 ..      90     103 ..      82     106 .. 0.63
   3 ?   -2.5   0.0       4.5   4.2e+03       8      24 ..     208     220 ..     202     227 .. 0.59

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 4.2e-22
                HHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  3 eqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                ++++e++r++I++ge+  G++L ++ eLa+ fgVsrt+vReALr+L++ gl+e+ +++G++V
  KIR62202.1 13 DDLAEQIRNRIMTGEIPIGAQL-RQAELASNFGVSRTPVREALRQLQTSGLIEVLPNKGAVV 73
                6789******************.************************************998 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.1
                 HHHHHHHTTSEEEE CS
        GntR  44 ALrrLeaeglverr 57 
                  L  L+a+  v r 
  KIR62202.1  90 ELEALAAARAVRRI 103
                 45666666666665 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 4.5
                 HHHHHHHTTSS-TTSB- CS
        GntR   8 rLredIlsgelrpGdkL 24 
                 +     ++ ++++G++L
  KIR62202.1 208 QM----REHVIKAGEQL 220
                 44....44455566666 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.6e-07   0.00015      17      55 ..      29      69 ..       9      78 .. 0.77
   2 ?   -3.2   0.1       9.4   8.8e+03      54      66 ..     101     112 ..      90     114 .. 0.51

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.6e-07
                EEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.E.TE CS
   HTH_Crp_2 17 eielpltqeelAsmlGltretvsrilseLkreglis.r.gr 55
                 i  +l q+elAs  G++r  v  +l++L+  gli+   ++
  KIR62202.1 29 PIGAQLRQAELASNFGVSRTPVREALRQLQTSGLIEvLpNK 69
                355689*****************************963344 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 9.4
                 TEEEEES-HHHHH CS
   HTH_Crp_2  54 grririldleaLr 66 
                 +r i+  ++++Lr
  KIR62202.1 101 RR-ITRDQIDQLR 112
                 23.5555555555 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.8e-07   0.00055      18      48 .]      34      64 ..      32      64 .. 0.94
   2 ?   -2.3   0.0       3.6   3.4e+03       7      14 ..     192     199 ..     190     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5.8e-07
      HTH_24 18 isqreLAerlglSpstvnrrlkrLeeeGlIk 48
                + q+eLA   g+S+++v++ l++L+ +GlI+
  KIR62202.1 34 LRQAELASNFGVSRTPVREALRQLQTSGLIE 64
                669***************************7 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.6
      HTH_24   7 kILelLqk 14 
                 +ILe+L +
  KIR62202.1 192 RILEALAD 199
                 89*99976 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   7.8e-06    0.0074      21      56 ..      33      68 ..      20      71 .. 0.90
   2 ?   -1.9   0.0       3.3   3.1e+03       9      23 ..     192     204 ..     189     211 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.8e-06
                EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 21 dltvgelarrlglsksavsrilkrLvaaGLverrpg 56
                 l+++ela  +g+s+  v  +l+ L+  GL+e  p+
  KIR62202.1 33 QLRQAELASNFGVSRTPVREALRQLQTSGLIEVLPN 68
                489*****************************9887 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.3
                 HHHHHHHCTTTSEEE CS
      MarR_2   9 rvLaaLgrrpgrdlt 23 
                 r+L aL++++ +  +
  KIR62202.1 192 RILEALADGDAQ--R 204
                 799999999873..3 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     9e-06    0.0085      18      53 ..      36      70 ..      31      71 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9e-06
      HTH_11 18 geeLAeeLnvSrrtvrrdIkaLeelgvpIesepgrG 53
                 +eLA  ++vSr+ vr  +++L+++g  Ie  p++G
  KIR62202.1 36 QAELASNFGVSRTPVREALRQLQTSG-LIEVLPNKG 70
                589***********************.899988887 PP

>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   6.3e-05     0.059       3      49 ..      21      67 ..      19      82 .. 0.87
   2 ?    2.0   0.1       0.3   2.8e+02      29      48 ..      84     103 ..      81     107 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.3e-05
                HHHHHHHHH.S----HHHHHHHHTS-HHHHHHHHHHHHHHSSEEEE- CS
        FaeA  3 eeIleylnsikapckTreiAdalglsaYQaRyYLeqLekegkikrsp 49
                + I++  + i+a  + +e+A  +g+s   +R  L qL+  g i+  p
  KIR62202.1 21 NRIMTGEIPIGAQLRQAELASNFGVSRTPVREALRQLQTSGLIEVLP 67
                667777778899*****************************999766 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHHHSSEEEE CS
        FaeA  29 aYQaRyYLeqLekegkikrs 48 
                 aY +R  Le L ++  ++r 
  KIR62202.1  84 AYEVRAELEALAAARAVRRI 103
                 8*************999995 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     9e-06    0.0085      24      58 ..      35      69 ..      32      87 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9e-06
                HHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 24 tadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                +  e+a++ gv+r+ v e+Lr+L   Gl+e+ + +
  KIR62202.1 35 RQAELASNFGVSRTPVREALRQLQTSGLIEVLPNK 69
                6689**************************98766 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.5e-05     0.014      18      53 ..      34      69 ..      30      70 .. 0.93
   2 ?   -2.6   0.0       5.8   5.5e+03      22      36 ..     219     233 ..     207     233 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-05
                EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEET CS
        MarR 18 lsvseLakklgvskstvtrvldrLekkGlieRsksp 53
                l+++eLa+ +gvs++ v ++l++L   Glie  +++
  KIR62202.1 34 LRQAELASNFGVSRTPVREALRQLQTSGLIEVLPNK 69
                7899***************************99886 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.8
                 HHHHHHTS-HHHHHH CS
        MarR  22 eLakklgvskstvtr 36 
                 +La+  ++ +stv r
  KIR62202.1 219 QLARWYELRSSTVFR 233
                 889989999999976 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011      0.11      19      49 ..      34      64 ..       8      67 .. 0.89
   2 ?   -2.7   0.0       5.9   5.5e+03      10      19 ..     109     118 ..     108     122 .. 0.83
   3 ?    0.3   0.1      0.66   6.3e+02       8      18 ..     193     203 ..     192     233 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
                -BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR 19 ltlselArrtglpkStvhRlLqtLvelGyve 49
                l+ +elA ++g++++ v+  L+ L+  G++e
  KIR62202.1 34 LRQAELASNFGVSRTPVREALRQLQTSGLIE 64
                8899*************************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.9
                 CT-CTTBSS- CS
    HTH_IclR  10 dalaeapqel 19 
                 d+l++a+qe+
  KIR62202.1 109 DQLRAANQEM 118
                 8999999998 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.66
                 HHCT-CTTBSS CS
    HTH_IclR   8 iLdalaeapqe 18 
                 iL+ala ++  
  KIR62202.1 193 ILEALADGDAQ 203
                 78888877654 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.3e-05      0.06      24      60 .]      35      71 ..      31      71 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.3e-05
                    -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTEE CS
  Fe_dep_repress 24 ktkdlaerLnvspssVsemlkkLekdGyveyekykgl 60
                    ++++la+  +vs   V e l+ L+  G++e+ + kg+
      KIR62202.1 35 RQAELASNFGVSRTPVREALRQLQTSGLIEVLPNKGA 71
                    6789*******************************97 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00014      0.13      26      57 ..      34      65 ..      27      74 .. 0.90
   2 ?   -1.6   0.0       3.9   3.7e+03      55      75 ..     147     164 ..     144     165 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00014
                B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        Rrf2 26 vsseeiaerqnispsylekilakLrkaglvks 57
                ++ +e+a+++++s++ ++  l++L+ +gl+++
  KIR62202.1 34 LRQAELASNFGVSRTPVREALRQLQTSGLIEV 65
                6789**************************96 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.9
                 EEEETTT-TCEEESSHCCCSB CS
        Rrf2  55 vksvrGkgGGyrLakppeeIt 75 
                 + s+ G+   +rL+k+ ++I+
  KIR62202.1 147 IASISGN---ARLSKAINDIN 164
                 5555555...99999999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00069      0.65      14      46 ..      35      67 ..      30      71 .. 0.84
   2 ?    0.5   0.0      0.67   6.3e+02      16      31 ..     218     233 ..     214     233 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00069
      HTH_29 14 tvsqiAkllglsrrtvyrwlkrfeegGlaalld 46
                + +++A + g+sr+ v+ +l+  ++ Gl   l+
  KIR62202.1 35 RQAELASNFGVSRTPVREALRQLQTSGLIEVLP 67
                6789***********************766555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.67
      HTH_29  16 sqiAkllglsrrtvyr 31 
                  q+A+++ l  +tv+r
  KIR62202.1 218 EQLARWYELRSSTVFR 233
                 599***********98 PP

>> DUF505  Protein of unknown function (DUF505)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.9e-05     0.055     479     523 ..      28      72 ..      19     102 .. 0.85
   2 ?   -3.8   0.0       3.3   3.1e+03     497     522 ..     189     214 ..     181     219 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.9e-05
      DUF505 479 iP.krgvsveelveevdeleeeevrealeklearglvevlpdgnvv 523
                 iP  +     el +++ ++ +  vreal++l+ +gl+evlp+++ v
  KIR62202.1  28 IPiGAQLRQAELASNF-GVSRTPVREALRQLQTSGLIEVLPNKGAV 72 
                 6666666667888888.89999*******************98755 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.3
      DUF505 497 eeeevrealeklearglvevlpdgnv 522
                 e+e+++eal   +a+ + + + + ++
  KIR62202.1 189 EHERILEALADGDAQRAADQMREHVI 214
                 56777777777777777777766665 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00016      0.15      14      48 ..      35      69 ..      31      71 .. 0.84
   2 ?    0.5   0.2      0.72   6.8e+02      16      34 ..      95     113 ..      87     117 .. 0.70
   3 ?    2.2   0.8      0.22   2.1e+02       4      28 ..     192     230 ..     191     233 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00016
      HTH_28 14 svreaArelgisrrtvyrWikryeegGiagLvprr 48
                +++e+A  +g+sr+ v+  ++++++ G+   +p +
  KIR62202.1 35 RQAELASNFGVSRTPVREALRQLQTSGLIEVLPNK 69
                799************************75555544 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.72
      HTH_28  16 reaArelgisrrtvyrWik 34 
                 ++a +   i+r+++ +++ 
  KIR62202.1  95 AAARAVRRITRDQIDQLRA 113
                 5555666679999998875 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.22
      HTH_28   4 eiikllaaGhsvre..............aArelgisrrt 28 
                 +i+++la+G+++r+              +Ar++ + ++t
  KIR62202.1 192 RILEALADGDAQRAadqmrehvikageqLARWYELRSST 230
                 688888999988875656666666566677777666666 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015      0.14       6      36 ..      35      65 ..      31      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
    HTH_CodY  6 taskiaDriGitrsvivnaLrkLesaGiies 36
                  +++a + G+ r  +  aLr+L  +G+ie 
  KIR62202.1 35 RQAELASNFGVSRTPVREALRQLQTSGLIEV 65
                55678999*********************94 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00017      0.16      28      55 .]      36      63 ..      29      63 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
      HTH_36 28 qetlakrlglsknTvsraikeLeqlGyi 55
                q+ la+++g+s+  v+ a++ L + G+i
  KIR62202.1 36 QAELASNFGVSRTPVREALRQLQTSGLI 63
                899***********************98 PP

>> FSIP2  Fibrous sheath-interacting protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0001     0.095     525     603 ..     142     220 ..     136     228 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0001
       FSIP2 525 vysnvlqqsGteeelyydikdtnkvfPkkvasliidkvsnvpletvsskssnadlfgdLdvnrivekaqehavkmepel 603
                 v+ +++     +  l + i+d n+ fP++v++ +i + s    e+ + ++   +++ d d +r  ++++eh++k   +l
  KIR62202.1 142 VFHTLIASISGNARLSKAINDINETFPRNVSAQLIVNDSRHRDENFQEHERILEALADGDAQRAADQMREHVIKAGEQL 220
                 6667777777778899**************66555556888889999999999********************987665 PP

>> ABATE  Putative stress-induced transcription regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   7.7    0.0025       2.4      37     105 ..      62     131 ..      48     198 .. 0.69
   2 ?   -0.4   0.4       1.8   1.7e+03      45      49 ..     204     208 ..     178     229 .. 0.48

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0025
                 HHHHH...............HHHHHHHHHHHHHHTHHHH.........HHHHHHHHHS----EEEE-TTS-E.. CS
       ABATE  37 llpagtaaagada.....elararaLRealrallaaaaagdpppaaalaalnallaaappaprLvrhddgpvdr 105
                 l    ++  +        ++++a ++R+ l al+aa+a++ +  ++++++l a+         L+ +++g+ + 
  KIR62202.1  62 LIEVLPNKGAVVSvpapwDVREAYEVRAELEALAAARAVR-RITRDQIDQLRAA---NQEMYDLSVAGRGDGVP 131
                 44444444444335556699***************99986.4444444444444...33333333333333333 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.8
                 ..... CS
       ABATE  45 agada 49 
                 ++ad+
  KIR62202.1 204 RAADQ 208
                 22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 1631.25
//
Query:       KIR62203.1  [L=488]
Description: glutamine synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-78  262.6   0.0    5.7e-78  262.3   0.0    1.1  1  Gln-synt_C    Glutamine synthetase, catalytic domain
    1.9e-09   37.3   0.1    1.1e-08   34.8   0.1    2.2  1  Gln-synt_N_2  Glutamine synthetase N-terminal domain
    0.00017   21.2   0.0     0.0045   16.7   0.0    2.2  2  Gln-synt_N    Glutamine synthetase, beta-Grasp domain


Domain annotation for each model (and alignments):
>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.3   0.0   9.5e-82   5.7e-78       3     345 .]     141     484 ..     139     484 .. 0.92

  Alignments for each domain:
  == domain 1  score: 262.3 bits;  conditional E-value: 9.5e-82
                 -HHHHHHHHHHHHHHTTCEEEEEEEEEEEEESEECCCESSEEEEEEE.T....B...B.TSS-TTBHCCCCCTCCHHHHHHHHHHHTT--EECCEEECC CS
  Gln-synt_C   3 dPRsvlkralarlaeeGltvvvgpElEFflfdkeedkeasksllevdse....ekgrpaekggyfsvapvdeaedlrreivealealgieveashhEva 97 
                 ++Rs+l+ +l  la +G+ ++vg+ElEF +f+    + + +++ ++ ++      g ++  ++  + +++d  + l++ +++ l++l ++++++  E +
  KIR62203.1 141 CTRSLLRDQLGALAGRGYGMTVGAELEFHVFRAAGAGLTGDRVGRPGAPgaaaPVGPTTPGAQLLHEEALDGLDALVQALYTGLTSLDLPLRSIELEFG 239
                 89******************************998876555555555556655556667788999999999**************************** PP

                 CTEEEEEE--EECHHHHHHHHHHHHHHHHHHHHTT-EEE-SSSSSTT.S---BEEEEEEEEECTT.EESSB-TTSGGG.B-HHHHHHHHHHHHHHHHHH CS
  Gln-synt_C  98 tgQvEinlkfadalkaaDnvvtfKrvvkevArkhgltatFmpKpleg.dnGsgmHvhlSlwdkdg.knlfadeddeya.lselarhfigGllkhakalt 193
                 ++Q E+++  ada ++aD vv+ + +v+++Ar+hg +atFm +p    ++ +g H+h+Sl d +  +++f  + d+ + ls+++r ++ Gll+ha+a +
  KIR62203.1 240 PSQLELTMAAADAATTADAVVVCRSAVRQIARRHGFHATFMSRPQGAeTASTGWHLHQSLTDLRTgRAAFVPDADDAGpLSATGRAYLEGLLRHAAAAA 338
                 ********************************************86515677*********986669999988888888******************** PP

                 HHHS-SCCHHHHCSSSTTSSSBEEEESS-TTCSEEEE-.TSGGCSTEEEECEBTTS-HHHHHHHHHHHHHHHHHTT--------S-SSSS-TTTHTSS- CS
  Gln-synt_C 194 altaptvnSYkRlvpgyeaPvalawgarNRsallRipa.skekakrvElRlpdasaNPYLalAallaAgldGienklepgepvekdlyelspeerkgie 291
                 a+t ptvn YkR+++++ aP  +awg +N+ a++R +   +  a+r+E+R+ +++aNPYL +Aa   +gldGi++ le+++p+ ++ y++++      +
  KIR62203.1 339 AFTTPTVNGYKRYQSHSLAPDRVAWGVDNKGAMVRAVGgPGDPATRLENRSGEPAANPYLYIAAQAVSGLDGITRDLELRPPT-TNPYDAAA------P 430
                 *************************************988899************************************9997.68898888......5 PP

                 B--SSHHHHHHHHHCSHHHCCSS-HHHHHHHHHHHHHCHHHHHCT--HHHHHHH CS
  Gln-synt_C 292 elPasleeAlealeedellkevlgeevieaylalkraEleeleeevsdwelery 345
                  lP+sl eA+ ale+d +++++lg+ v++ y +lkraE+e++  +vsdwe ++y
  KIR62203.1 431 PLPRSLGEAVAALEADGVFRAALGDVVVDWYARLKRAEYERYLLHVSDWEQREY 484
                 7*************************************************9877 PP

>> Gln-synt_N_2  Glutamine synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.1   1.9e-12   1.1e-08      14     106 ..      35     137 ..      25     138 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.9e-12
                   ---EEEEEEE-TTS-EEEEEEEGGGHHHHHTT-EEE........-..GGGGG--TTS---TT-S-SSS--EEEEE-GGG-EEE---SSTTSEEEEEE CS
  Gln-synt_N_2  14 qveLieflyvdlaGvtrGkalplasLeekLasGiGl........t..katlalserdlidevedlgpvGelrLvpdPasavalpyaPdaaallgdlv 100
                    +e+i+f +vd  G++rGk+++++++++ + sG+          t  k+   +   d+   v+ ++  G++ LvpdP+s+ ++p a  +  +l d++
    KIR62203.1  35 GIEMIRFGFVDQHGIVRGKTIARSAVAAVMRSGLTApsslllkdTsgKSVFPVFAADTGVGVAGFAGAGDIVLVPDPTSFRVVPWAERTGWVLCDVR 131
                   589******************************975111111111113344566789999999********************************** PP

                   -TTS-B CS
  Gln-synt_N_2 101 evdgtP 106
                     dg+P
    KIR62203.1 132 FPDGSP 137
                   ***999 PP

>> Gln-synt_N  Glutamine synthetase, beta-Grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.025   1.5e+02       2      30 ..      36      63 ..      35      76 .. 0.81
   2 !   16.7   0.0   7.6e-07    0.0045      51      81 ..     103     131 ..      93     133 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.025
                --EEEEEEE-SSS-EEEEEEEHHHHHHHT CS
  Gln-synt_N  2 vkfvdlqFtDikgklkhvtipadelseda 30
                ++++++ F+D +g ++  ti+ +++ + +
  KIR62203.1 36 IEMIRFGFVDQHGIVRGKTIARSAV-AAV 63
                799**********999988887776.555 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 7.6e-07
                 -EEEEEEEGGGEEE-SS-SS-.EEEEEEEEE CS
  Gln-synt_N  51 SDmlLkPdlstavidPfreekktarvicdvy 81 
                  D++L+Pd++++ ++P+ e+  t  v+cdv 
  KIR62203.1 103 GDIVLVPDPTSFRVVPWAER--TGWVLCDVR 131
                 59****************74..699****95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3159.63
//
Query:       KIR62204.1  [L=545]
Description: hypothetical protein TK50_28090 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-83  278.9   5.4    1.9e-82  277.6   5.4    1.5  1  Amidase   Amidase
  ------ inclusion threshold ------
        0.1   12.3   0.0       0.49   10.1   0.0    2.2  1  DUF3693   Phage related protein


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.6   5.4   2.2e-86   1.9e-82      32     449 ..      13     393 ..       8     395 .. 0.93

  Alignments for each domain:
  == domain 1  score: 277.6 bits;  conditional E-value: 2.2e-86
                 HHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE--SGGG-SSSSTT-TT---BBTTCTCCB--S CS
     Amidase  32 AakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkTnmdefamgsstensvfgptrNPwdksrtpGG 130
                 A ++ ++ a++ ++gpL+Gv ++vKDn+dv+g+ptta++  l+++pa + at v+rL +aGa + gkTnmd+fa g+ +  s +g+ +   ++ +++GG
  KIR62204.1  13 APEAVARFAAEAPDGPLAGVRFAVKDNLDVAGYPTTAACPDLADRPAATSATAVRRLVAAGAAPAGKTNMDQFATGLVGTRSPYGACHSVHSPAHVSGG 111
                 556667777899*************************************************************************************** PP

                 SSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSHHHHHHHHHHHBS--TT-TTS----HHHHHHHH CS
     Amidase 131 SSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsvedlalllrvilgedpkdstssvipeesedlae 229
                 SS+GsA+avA+glvpla+GtDt+GS R+PA+f+glvGlKPt+g+vS +g+ + + sld+v  ++r+v  +a +l+v++  dp d+ s + p      a+
  KIR62204.1 112 SSSGSAVAVASGLVPLALGTDTAGSGRVPAAFNGLVGLKPTRGLVSTRGLLPACRSLDCVTTFTRTVAGAASALDVLAWADPDDPWSRPAP-----PAP 205
                 ****************************************************************************************976.....345 PP

                 CTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHHHHHHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCC CS
     Amidase 230 elkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleealslyylilvaeassnlarylgvryerlsetkvlsellpksrael 328
                 + + + +   ++v+  d   +ldp+ ++a ++al++L    ++vv+v++  +  a++l+y   +++                     ++ + ++ + ++
  KIR62204.1 206 PPGVATRMRTVAVPAGDL--DLDPPHRAAWAAALRRLDTVAAQVVPVDVGPFLAAAALLYGGPWVAER-------------------WAGFGTHLSGAG 283
                 5555557778*******9..8************************************88877777665...................678999999999 PP

                 S-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSSS--BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT--EEEEEC CS
     Amidase 329 lgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafeelDvllsPtaptpaprlgekdktidsytvlynlldftavvvpvnlaglpalsvpa 427
                 + + v+r +  g  +   +     +  a  + ++lrr+  +++ ++D+ll+P++p  ++  + +    d   v  +l  +t    +vnl +l a++vpa
  KIR62204.1 284 VDPTVRRIVTPGRDVAGPD-----VFAALDRLAALRRATEQVWLDVDALLLPVTPGHPTLAEVAA---DPVGVNSRLGTYT---NFVNLLDLCAVAVPA 371
                 9999999999999998888.....788888888**************************998886...5668888888888...*************** PP

                 CCCT.TECEEEEEEESTT-HHH CS
     Amidase 428 gksedglPvGvqvigkafqeet 449
                 g+++dglP Gvq++++af++  
  KIR62204.1 372 GTRADGLPFGVQFVAPAFADLP 393
                 ******************9965 PP

>> DUF3693  Phage related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   5.4e-05      0.49      11      39 ..     226     251 ..     224     262 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 5.4e-05
     DUF3693  11 tpaekaaWesIakkLnalaavLvlgvgma 39 
                 +p  +aaW++ +++L ++aa+   +v++ 
  KIR62204.1 226 DPPHRAAWAAALRRLDTVAAQ---VVPVD 251
                 5789*****************...77765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.55
# Mc/sec: 2990.98
//
Query:       KIR62205.1  [L=322]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-34  118.2   0.0    5.6e-34  117.8   0.0    1.1  1  Peripla_BP_2  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.0   3.1e-38   5.6e-34       4     235 ..      67     294 ..      65     296 .. 0.97

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 3.1e-38
                   -SHHHHHHHHHTT-GGGEEEB-GGG--GGGGGGT..TS-BSBESSSB-HHHHHHH--SEEEE-GGG...GGGHHHHHHHS-EEE----TTSHHHHHH CS
  Peripla_BP_2   4 lspsvteillalGatdkvvgvdtttsdpldadkleeaivevgadgeidvEklaalkPDlvilskglgltdedeellksgiptvivessntgeslkeq 100
                   l+ s++ei++ lG+  +vvg+dt+t +p++a+     +v++ a+++++ E+++al P++v+++ ++g+++   +l+++gip+v v   +t++ +   
    KIR62205.1  67 LYGSIAEIVFSLGLGGNVVGRDTSTTFPAAAH----LPVVTPAGHDLSAEAVLALAPTVVLADDSIGPPETLRQLRAAGIPVVLVAAEQTLDAVPAH 159
                   7889***************************9....9************************************************************ PP

                   HHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT..-EEEEEEEETTE..EEEE-TTSTTTHHHHTS--EES.TTT--STT-EEE-HHHHHHH--S CS
  Peripla_BP_2 101 iralgellgledeaeklvaeidsklaaaksaidse.kpkpvlvfggadeggyvvagsnsyigdlldalgieni.aaeskkseyeeisaEqilasdpd 195
                   +ra++ +lg  +++e lva++++++aaa++ ++    p+ ++++  + +g y++ g++ +   +++a+g+ ++ +a +    + ++  E + +++pd
    KIR62205.1 160 VRAIAAALGVGEAGERLVARVQDEIAAARDGVPDGaSPRVAFLYLRGTAGVYLIGGRGAGSDTMIEAAGGVDAgTAIG-LAKFRPLTSEGLINAAPD 255
                   ***********************************99999999999999************************88888.****************** PP

                   EEEEEEHHHHT-S--HHHHT-SHHHHTSHHHHTT-EEEE- CS
  Peripla_BP_2 196 vifvsgraeadnktgleflkenpllaelpAvkngrVyald 235
                   vi+v++        g+++l++ p++a++pA +++r++++d
    KIR62205.1 256 VILVMSG-GLASVGGVDGLLALPGVAQTPAGATRRIVDMD 294
                   *******.*****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2306.39
//
Query:       KIR62206.1  [L=285]
Description: hemin ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-25   90.3   0.0      2e-25   89.9   0.0    1.2  1  ABC_tran     ABC transporter
    2.7e-08   34.0   0.1     0.0013   18.6   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    1.5e-07   31.1   0.0     0.0036   16.8   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
    0.00021   20.9   0.0    0.00044   19.9   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
    0.00091   18.9   0.0     0.0015   18.2   0.0    1.3  1  AAA_27       AAA domain
     0.0027   16.6   0.4        1.6    7.5   0.0    2.2  2  ABC_ATPase   Predicted ATPase of the ABC class
     0.0069   16.0   1.1      0.017   14.7   0.1    2.1  2  AAA_25       AAA domain
     0.0076   16.8   0.0       0.01   16.3   0.0    1.1  1  AAA_23       AAA domain
  ------ inclusion threshold ------
      0.013   15.7   0.2       0.08   13.1   0.2    2.2  1  AAA_33       AAA domain
      0.021   14.7   0.0      0.034   14.0   0.0    1.2  1  RsgA_GTPase  RsgA GTPase
      0.041   14.1   0.1       0.18   12.1   0.1    1.9  1  AAA_22       AAA domain
       0.11   12.2   4.6       0.33   10.7   4.6    2.0  1  AAA_30       AAA domain
       0.13   12.6   3.8       0.59   10.5   3.8    1.9  1  AAA_16       AAA ATPase domain
       0.15   11.7   0.1        2.8    7.5   0.0    2.4  2  cobW         CobW/HypB/UreG, nucleotide-binding domain
       0.16   12.1   0.1       0.51   10.4   0.0    1.8  2  MMR_HSR1     50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.0   1.7e-28     2e-25       1     137 []      38     185 ..      38     185 .. 0.93

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 1.7e-28
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...............HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...............esdee 84 
                 l+ v+l +++ge++a+vG+nGaGKStLl++ +g l  ++G++++dg++l   +  +l  + +vl+q ++l     v +                ++d+ 
  KIR62206.1  38 LDGVDLAVRAGEVHALVGPNGAGKSTLLAAASGDLPAAAGTVEVDGRPLGGWSAVELAMRRAVLTQRHTLSFPFAVVDVvrmgrapwtgrpeqaHDDAI 136
                 789****************************************************************777666667777899******99988777777 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +++ +++ + + +++++      +LSgG++ r alaral++++ +lllDEpta
  KIR62206.1 137 VAESMRRCDVIRFAARPF----PTLSGGEQARAALARALAQRAGVLLLDEPTA 185
                 999999999999999999....*****************************97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.1e-06    0.0013       2      20 ..      51      69 ..      50      86 .. 0.89
   2 !   13.5   0.0     4e-05     0.047     232     282 ..     152     199 ..     139     216 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.1e-06
      AAA_21  2 nvliGpNgsGKSnLLdald 20
                 +l+GpNg+GKS+LL a +
  KIR62206.1 51 HALVGPNGAGKSTLLAAAS 69
                68*************9975 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 4e-05
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell 282
                 +p+  lS G +  +al+ al++++   ++ll+DEp + L+ + ++ ++++ 
  KIR62206.1 152 RPFPTLSGGEQARAALARALAQRA---GVLLLDEPTAALDLHHQELVMRIA 199
                 688899999999999999999999...*************99999988876 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     6e-05     0.071      25      43 ..      49      67 ..      42      72 .. 0.89
   2 !   16.8   0.0     3e-06    0.0036     136     201 ..     156     217 ..      79     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6e-05
                SEEEEEESTTSSHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldA 43
                ++ a+vGpNG+GKs ll A
  KIR62206.1 49 EVHALVGPNGAGKSTLLAA 67
                5789************988 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 3e-06
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreem 201
                 +LSgGe++ +ala  +A    ++a + llDe  aaLD ++ + v ++ + + +    +v+ l++  
  KIR62206.1 156 TLSGGEQARAALARALA----QRAGVLLLDEPTAALDLHHQELVMRIARDRAEAGDAVVVVLHDLA 217
                 79********9998876....7899**********************9999999988888877655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.6e-07   0.00044      13      41 ..      39      67 ..      37      74 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.6e-07
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllDA 41
                dg ++ ++  +++ l+Gp+G+GKSTll A
  KIR62206.1 39 DGVDLAVRAGEVHALVGPNGAGKSTLLAA 67
                556677775559**************976 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.2e-06    0.0015       3      47 ..      25      69 ..      23      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.2e-06
      AAA_27  3 lerLdLeryGkftdrsldfsaeeadlhliyGpNEAGKstalrAis 47
                ++ L++er G+     +d+   + ++h ++GpN AGKst+l+A s
  KIR62206.1 25 VAGLRVERAGRPVLDGVDLAVRAGEVHALVGPNGAGKSTLLAAAS 69
                556666666666666788888899*****************9975 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0013       1.6     240     263 ..      43      67 ..      32      84 .. 0.90
   2 !    7.3   0.1    0.0014       1.7     324     362 ..     158     196 ..     154     237 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0013
                 EEE-SS.EEEEEE-TTSSHHHHHHH CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeA 263
                 ++++ G v ++vG++  GKsTLL A
  KIR62206.1  43 LAVRAGeVHALVGPNGAGKSTLLAA 67 
                 6788999****************98 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0014
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHH CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmirDerm 362
                 SG     a++++al  +a +lL+DE t+A  l ++   m
  KIR62206.1 158 SGGEQARAALARALAQRAGVLLLDEPTAALDLHHQELVM 196
                 777778899********************9987754444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   1.4e-05     0.017      29      53 ..      44      68 ..      22     101 .. 0.86
   2 ?   -0.4   0.1      0.61   7.2e+02      98     154 ..     172     186 ..     127     220 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
      AAA_25 29 llpagelallaGapgtGKttlaldl 53
                 ++age+++l+G+ g+GK+tl+   
  KIR62206.1 44 AVRAGEVHALVGPNGAGKSTLLAAA 68
                5689*****************9765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.61
      AAA_25  98 rddarllvldlagveslpLfakdrggtlltadvdaleaaieevegvrlvviDplsra 154
                 +++a++l+ld ++                                          +a
  KIR62206.1 172 AQRAGVLLLDEPT------------------------------------------AA 186
                 2233333333322..........................................22 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.6e-06      0.01      23      38 ..      52      67 ..      42      69 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.6e-06
      AAA_23 23 lItGpNGaGKTTildA 38
                +++GpNGaGK+T+l A
  KIR62206.1 52 ALVGPNGAGKSTLLAA 67
                789***********88 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   6.7e-05      0.08       2      46 ..      51     108 ..      50     236 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.7e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdt...........lrrrlfgtdqqskt 46 
                   lvG++G+GKstl+      l+  a +++ d            ++rr + t++++++
  KIR62206.1  51 HALVGPNGAGKSTLLAAASGDLPaaAGTVEVDGrplggwsavelAMRRAVLTQRHTLS 108
                 679************9998888877667777777777777777633333334444444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.9e-05     0.034      98     130 ..      47      79 ..      27      84 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.9e-05
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktgev 130
                  ++++ +lvG+ G+GKStL+ a  ++l ++ g v
   KIR62206.1  47 AGEVHALVGPNGAGKSTLLAAASGDLPAAAGTV 79 
                  45899**************99888877666655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00015      0.18       9      99 ..      52     182 ..      46     214 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka..................................... 70 
                 +++G+ G+GK+tll+     l++        +++v+v+   +++++ +  ++ ra+  ++++                                     
  KIR62206.1  52 ALVGPNGAGKSTLLAAASGDLPA-------AAGTVEVDGRPLGGWSAVELAMRRAVLTQRHTlsfpfavvdvvrmgrapwtgrpeqahddaivaesmrr 143
                 79*************99999985.......788888888888877777666666666555556666666666666666666666666666666666666 PP

      AAA_22  71 ............erlsseellealeqalraravielliiDE 99 
                                  e+ ++al++al +ra   +l++DE
  KIR62206.1 144 cdvirfaarpfpTLSGGEQARAALARALAQRAG--VLLLDE 182
                 666666666664333444444555555555555..666666 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.6   0.00027      0.33      15      49 ..      46      79 ..      39     255 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00027
      AAA_30 15 tsgdrvavltGpAGtGKttalkalreaweaaggrv 49
                  g  v++l+Gp G+GK+t+l+a+   + aa g+v
  KIR62206.1 46 RAG-EVHALVGPNGAGKSTLLAAASGDLPAAAGTV 79
                444.599****************976666664333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.8    0.0005      0.59      21     117 ..      47     185 ..      37     242 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0005
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqalareellrqllde.................aesaeleawrekl 101
                 +g  e+  l+G+ G GKs+l+ ++   l ++ g + + g+             ++++ r+ +l+q ++                  +   e++++++  
  KIR62206.1  47 AG--EVHALVGPNGAGKSTLLAAASGDLPAAAGTVeVDGRPLGG------WSAVELAMRRAVLTQRHTLsfpfavvdvvrmgrapwTGRPEQAHDDAIV 137
                 44..56679*************9999999883222333333333......3344555555555555555666666665555555443333334444433 PP

      AAA_16 102 eeala....................avpelagaea............s 117
                  e+++                    a ++la+a+a             
  KIR62206.1 138 AESMRrcdvirfaarpfptlsggeqARAALARALAqragvllldeptA 185
                 344446666666666444444443322222222223333333444442 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0023       2.8       2      19 ..      50      67 ..      49      75 .. 0.88
   2 ?    1.7   0.0      0.14   1.7e+02     100     144 ..      95     146 ..      86     232 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0023
                EEEEEESTTCCHHHHHHH CS
        cobW  2 vtvltGflGsGKTtLlnh 19
                v  l+G+ G+GK+tLl +
  KIR62206.1 50 VHALVGPNGAGKSTLLAA 67
                6789***********975 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.14
                 HTTSHHHHHCCCECEEEEEEETTTH........CCHCCHHHHHHHHHHTSSE CS
        cobW 100 afteeelksdltldavvavvDaknl.......eaeeekieekaedqlaaadl 144
                 a++   l+++ tl++  avvD+ ++         e+ +    + + +  +d+
  KIR62206.1  95 AMRRAVLTQRHTLSFPFAVVDVVRMgrapwtgRPEQAHDDAIVAESMRRCDV 146
                 5556677788888888888888777777776633334444444444444444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00043      0.51       3      22 ..      52      71 ..      50      86 .. 0.81
   2 ?   -2.1   0.0       3.3   3.9e+03      63      82 ..     193     212 ..     156     231 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00043
                EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge 22
                a+vG   +GKStL+ a +g+
  KIR62206.1 52 ALVGPNGAGKSTLLAAASGD 71
                89*************99986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.3
                 HHHHHHHHHHHHCTSEEEEE CS
    MMR_HSR1  63 ekglgkaflaleeadlillv 82 
                 e  ++ a  + e  d++++v
  KIR62206.1 193 ELVMRIARDRAEAGDAVVVV 212
                 22222232222222444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2007.62
//
Query:       KIR62207.1  [L=102]
Description: hypothetical protein TK50_28140 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-19   69.1   0.0    5.1e-19   68.7   0.0    1.1  1  DUF2470   Protein of unknown function (DUF2470)
  ------ inclusion threshold ------
      0.091   12.6   0.1       0.42   10.5   0.1    2.1  1  HTH_23    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> DUF2470  Protein of unknown function (DUF2470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   5.6e-23   5.1e-19       4      77 .]       4      76 ..       2      76 .. 0.94

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 5.6e-23
                HHHHHHHH-HHHHHHHHHHCST-TTCCEEEEEEE-SSEEEEEEC.....CEEEEEE-SS---SCCHHHHHHHHH CS
     DUF2470  4 iiaHMNkDHaddlllylrhygkvkeaksarmtdidldgltlrlgakagsektvripFdpplkswaearerLveM 77
                +++HMN+DHadd ll++r +g+ ++a+ ar t++d+dg+++ + a ag e++vripF ++++++ae+r+++v M
  KIR62207.1  4 VCRHMNADHADDSLLICRTLGGCPDATRARATGLDADGMDFAV-AVAGIEVPVRIPFARRISERAEIRQEVVRM 76
                7*****************************************5.4554499*********************99 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   4.7e-05      0.42       3      36 ..      66      93 ..      64     101 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.7e-05
      HTH_23  3 sereRlrillllaeGlsvreIAreLgvsrrTvyr 36
                ++++R+++++++       +++++Lgv++r   r
  KIR62207.1 66 RAEIRQEVVRMYE------QACDALGVPPRSAER 93
                6777888888888......69******9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 782.11
//
Query:       KIR62208.1  [L=259]
Description: ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-32  110.4   0.0    1.2e-31  110.0   0.0    1.1  1  ABC_tran      ABC transporter
    3.3e-06   27.6   0.0    4.8e-06   27.1   0.0    1.3  1  AAA_16        AAA ATPase domain
    1.6e-05   24.9   0.2     0.0042   16.9   0.2    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0003   21.1   0.0    0.00064   20.0   0.0    1.8  1  AAA_28        AAA domain
     0.0004   20.7   0.1     0.0011   19.3   0.1    1.8  1  AAA_22        AAA domain
      0.001   19.0   0.1     0.0016   18.4   0.1    1.2  1  Rad17         Rad17 P-loop domain
     0.0017   18.8   0.1     0.0043   17.5   0.1    1.9  1  AAA           ATPase family associated with various cellular 
     0.0064   16.4   0.0      0.011   15.7   0.0    1.3  1  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.018   14.7   0.0      0.033   13.9   0.0    1.5  1  AAA_30        AAA domain
      0.021   14.4   0.0      0.054   13.1   0.0    1.7  1  AAA_25        AAA domain
      0.022   14.8   0.1       0.21   11.7   0.0    2.2  2  DUF5632       Family of unknown function (DUF5632)
      0.029   14.3   0.0      0.061   13.2   0.0    1.5  1  ATPase_2      ATPase domain predominantly from Archaea
      0.029   14.0   0.0      0.041   13.5   0.0    1.2  1  ATP-synt_ab   ATP synthase alpha/beta family, nucleotide-bind
       0.03   14.1   0.1      0.081   12.7   0.1    1.7  1  AAA_29        P-loop containing region of AAA domain
      0.036   12.9   0.1        2.2    7.0   0.0    2.1  2  ABC_ATPase    Predicted ATPase of the ABC class
      0.037   14.2   0.4      0.059   13.5   0.4    1.7  1  AAA_33        AAA domain
      0.046   13.8   0.0       0.15   12.2   0.0    1.9  1  MMR_HSR1      50S ribosome-binding GTPase
      0.046   12.8   0.0      0.072   12.1   0.0    1.2  1  T2SSE         Type II/IV secretion system protein
      0.054   12.7   0.0       0.16   11.1   0.0    1.7  2  PIF1          PIF1-like helicase
      0.058   13.3   0.1       0.14   12.1   0.1    1.6  2  NACHT         NACHT domain
      0.061   13.9   0.2       0.11   13.1   0.2    1.4  1  AAA_18        AAA domain
      0.071   12.3   0.1       0.12   11.5   0.1    1.3  1  NB-ARC        NB-ARC domain
      0.082   12.6   0.1       0.22   11.2   0.1    1.7  2  PRK           Phosphoribulokinase / Uridine kinase family
       0.11   12.2   0.1        0.2   11.4   0.1    1.3  1  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
       0.12   11.7   0.0       0.21   10.9   0.0    1.4  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.18   11.7   0.1       0.44   10.4   0.1    1.7  1  MobB          Molybdopterin guanine dinucleotide synthesis pr
       0.19   11.0   0.0        0.3   10.3   0.0    1.2  1  Zeta_toxin    Zeta toxin
        0.2   11.3   0.0       0.33   10.5   0.0    1.3  1  SRP54         SRP54-type protein, GTPase domain
       0.21   11.7   0.1       0.63   10.1   0.2    1.7  2  AAA_14        AAA domain
       0.21   10.9   0.1        3.8    6.8   0.0    2.1  2  ATPase        KaiC
       0.24   11.9   0.1       0.34   11.4   0.1    1.1  1  AAA_23        AAA domain
       0.25   11.8   0.1       0.44   11.0   0.1    1.4  1  RNA_helicase  RNA helicase
       0.34   10.8   0.3       0.52   10.1   0.3    1.2  1  dNK           Deoxynucleoside kinase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0   0.0   2.2e-34   1.2e-31       1     136 [.      27     166 ..      27     167 .. 0.97

  Alignments for each domain:
  == domain 1  score: 110.0 bits;  conditional E-value: 2.2e-34
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 l++++l++++ge + +vG++G+GK+tLlk+lagl+ +t+G++++ g+++ +       +e+g+++q p+l p  t+ +n               +++++
  KIR62208.1  27 LHDINLTVRRGEFISVVGPSGCGKTTLLKILAGLSPKTAGTVRIAGTEVAR-----PLREVGMVFQAPTLLPWRTIFDNvmvpaeiqkldpaRHRARAQ 120
                 789***************************************999999988.....999*****************************999989999** PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++l+ +gl++++ +      ++LSgG++qr  ++ral+ +p +ll+DEp+
  KIR62208.1 121 ELLDMVGLTGFERKYP----HELSGGMQQRAGICRALVHDPAVLLMDEPF 166
                 **********999998....*****************************6 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   8.9e-09   4.8e-06       4     127 ..      19     147 ..      18     196 .. 0.63

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 8.9e-09
      AAA_16   4 GReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesa.........ipy.salaqalareellrqlldeaesa 92 
                  R + +++L+++  +vr+g  e + ++G+sG+GK++l++ l+  l+ + + ++r   ++  +          +p  +++ +++++   + ++ ++++ a
  KIR62208.1  19 RRSAPTQALHDINLTVRRG--EFISVVGPSGCGKTTLLKILA-GLSPKTAGTVRIAGTEVARPlrevgmvfqAPTlLPWRTIFDN-VMVPAEIQKLDPA 113
                 5888899999999999999..78***************9888.677775556555555552222233444553334678888866.8888888886665 PP

      AAA_16  93 eleawrekleeala........avpelagaeasrllellkrll 127
                  ++a +++l++ ++        +         + l   +++ +
  KIR62208.1 114 RHRARAQELLDMVGltgferkyP---------HELSGGMQQRA 147
                 65555555555555333333320.........33333333333 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   7.8e-06    0.0042       3      23 ..      41      61 ..      39      82 .. 0.86
   2 ?    6.4   0.0     0.013       6.9     234     299 ..     136     200 ..      77     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7.8e-06
      AAA_21  3 vliGpNgsGKSnLLdaldlla 23
                 ++Gp g+GK++LL++l +l+
  KIR62208.1 41 SVVGPSGCGKTTLLKILAGLS 61
                58***************9994 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.013
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll..ellkelsrngaQv.iltTHS.p 299
                 ++elS G+++ +++  al  ++   ++ll DEp   L+  ++r+ +  ell++ ++  +Q  +l+THS p
  KIR62208.1 136 PHELSGGMQQRAGICRALVHDP---AVLLMDEPFGALDA-MTREYMnvELLRIWRE-SGQTaVLVTHSiP 200
                 5788*******99999999999...********999998.8888888888877666.5555599999855 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.2e-06   0.00064       2      48 ..      40      94 ..      39     209 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.2e-06
      AAA_28  2 ivitGgestGKTtlleaLa....ar.gypvv..pEaareileekl.akgedalpw 48
                i ++G++++GKTtll+ La    ++ g++ +  +E+ar + e ++ ++    lpw
  KIR62208.1 40 ISVVGPSGCGKTTLLKILAglspKTaGTVRIagTEVARPLREVGMvFQAPTLLPW 94
                6799***************777633676644499**9999888885444455666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1     2e-06    0.0011       4      38 ..      36      77 ..      33     197 .. 0.61

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2e-06
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeeakaee.......e 38
                +  ++ v+G+sG+GKTtll+ l+   ++ a   +       +
  KIR62208.1 36 RGEFISVVGPSGCGKTTLLKILAGLSPKTAGTVRiagtevaR 77
                56799***************9998876433333364444441 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1     3e-06    0.0016      34      66 ..      26      58 ..      20      67 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3e-06
       Rad17 34 wlkadvLesrkkriLLisGPsGCgkstvvkvLs 66
                +l+   L  r+ + + + GPsGCgk+t +k+L+
  KIR62208.1 26 ALHDINLTVRRGEFISVVGPSGCGKTTLLKILA 58
                55666677777778899***************8 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1     8e-06    0.0043       3      35 ..      42      76 ..      40     195 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 8e-06
                EESSTTSSHHHHHHHHHHHH..THEEEEEETTTCS CS
         AAA  3 lyGppGtGKTllakavakel..gvefleisgsell 35
                ++Gp G+GKT+l k +a  +   +  ++i g+e+ 
  KIR62208.1 42 VVGPSGCGKTTLLKILAGLSpkTAGTVRIAGTEVA 76
                79***************997433667888887776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.9e-05     0.011      89     126 ..      26      64 ..       9      80 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.9e-05
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpelelk 126
                  +l++++  ++  +++ +vG+SG GK+tL++ l++     
   KIR62208.1  26 ALHDINLTVRRgEFISVVGPSGCGKTTLLKILAGLSPKT 64 
                  5666666666559999**************999865444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     6e-05     0.033      17      53 ..      36      72 ..      20     122 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6e-05
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaaggrviglA 53
                +  +  ++Gp G GKtt+lk l+ +  +  g+v ++ 
  KIR62208.1 36 RGEFISVVGPSGCGKTTLLKILAGLSPKTAGTVRIAG 72
                4457789****************99999987887654 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0    0.0001     0.054      29      50 ..      33      54 ..      11      61 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0001
      AAA_25 29 llpagelallaGapgtGKttla 50
                 +++ge++ ++G++g+GKttl+
  KIR62208.1 33 TVRRGEFISVVGPSGCGKTTLL 54
                5689****************97 PP

>> DUF5632  Family of unknown function (DUF5632)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00038      0.21      46      73 ..      99     126 ..      93     132 .. 0.88
   2 ?    0.4   0.0       1.3   6.9e+02      32      60 ..     191     215 ..     169     225 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00038
     DUF5632  46 pgvelpagvtLleParrsgeleallGev 73 
                  +v++pa+++ l+Par ++++++ll  v
  KIR62208.1  99 DNVMVPAEIQKLDPARHRARAQELLDMV 126
                 689********************99765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.3
     DUF5632  32 ttllvtDlasGWiPpgvelpagvtLlePa 60 
                 t +lvt      iP  v l+  v +l+P 
  KIR62208.1 191 TAVLVTH----SIPEAVFLSDRVVVLSPR 215
                 5566664....488889999888888884 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00011     0.061       8      40 ..      27      57 ..      24      67 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
    ATPase_2  8 lkeleeilerepneiyfiYGpegsGKtaLlkei 40
                l +++  ++r   e++ + Gp g+GKt+Llk +
  KIR62208.1 27 LHDINLTVRR--GEFISVVGPSGCGKTTLLKIL 57
                5666666666..6788999***********965 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.5e-05     0.041       6      75 ..      29      98 ..      24     122 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.5e-05
                 HHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  6 DalfpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvgiGergnevaevleefpegtimkrtvlv 75
                 D  +++ +G+ + ++g +g+Gkt++++ l+  s ++  ++ ++  e ++ ++ev + f+  t++   +++
   KIR62208.1 29 DINLTVRRGEFISVVGPSGCGKTTLLKILAGLSPKTAGTVRIAGTEVARPLREVGMVFQAPTLLPWRTIF 98
                 7788999*********************999987776788888888899999999999986644333333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00015     0.081      17      39 ..      32      54 ..      25      67 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00015
      AAA_29 17 ieidlkgatlltGpsGsGKSTll 39
                +++++ +++ ++GpsG GK+Tll
  KIR62208.1 32 LTVRRGEFISVVGPSGCGKTTLL 54
                4555444999************9 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.038        21     241     264 ..      33      57 ..      30      69 .. 0.84
   2 ?    7.0   0.0    0.0041       2.2     324     372 ..     140     188 ..     135     213 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.038
                 EE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAl 264
                  +++G  + +vG+   GK+TLL+ l
  KIR62208.1  33 TVRRGeFISVVGPSGCGKTTLLKIL 57 
                 678888889*************976 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0041
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG-- CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekep 372
                 SG + q a i +al  +  +lL+DE   A   m r  +  el+  ++e 
  KIR62208.1 140 SGGMQQRAGICRALVHDPAVLLMDEPFGALDAMTREYMNVELLRIWRES 188
                 9*********************************999988888777665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   0.00011     0.059       3      28 ..      41      70 ..      39     206 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00011
      AAA_33  3 llvGlpGsGKstlaerllkklg....avll 28
                 +vG++G+GK+tl++ l+   +    +v++
  KIR62208.1 41 SVVGPSGCGKTTLLKILAGLSPktagTVRI 70
                589***********9986444444555655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00027      0.15       2      56 ..      40     128 ..      39     197 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00027
                 EEEEESTTSSHHHHHHHHHT...STEEESSSTTSSSSEEEEEEE..ETTEE................................EEEEECGGC CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg...ekaivsdkpgtTrdinegrvk..lkgke................................ielvDtpGl 56 
                 + +vG +  GK+tL++ l g   ++a + +++gt      ++v   +   +                                 el+D++Gl
  KIR62208.1  40 ISVVGPSGCGKTTLLKILAGlspKTAGTVRIAGTEVARPLREVGmvF---QaptllpwrtifdnvmvpaeiqkldparhraraQELLDMVGL 128
                 789***************99544356666666665555444444221...022333344444444444444444444444444677777775 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013     0.072     113     156 ..      21      64 ..      12      79 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
       T2SSE 113 alkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156
                 +   +  + ++  vr+   i v G+ g GKttll +l    +k+
  KIR62208.1  21 SAPTQALHDINLTVRRGEFISVVGPSGCGKTTLLKILAGLSPKT 64 
                 555666677888999999999*************9988777666 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00029      0.16      17      72 ..      32      86 ..      21     117 .. 0.83
   2 ?   -1.4   0.0       1.9     1e+03     102     130 ..     149     177 ..     139     184 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00029
                ...HCTS-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEESSHHHHHCC.TSEEC CS
        PIF1 17 vlnekgklfFvtGsgGtgKtflwkallkklrsegkivlavAssGvAalllegGrta 72
                ++ ++g+++ v G +G gKt l+k l + l ++   ++ +A + vA  l e G + 
  KIR62208.1 32 LTVRRGEFISVVGPSGCGKTTLLKIL-AGLSPKTAGTVRIAGTEVARPLREVGMVF 86
                455789*****************866.56788889999****99998877777665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.9
                 C-SEEEEECGGGSBHHHHHHHHHHHHHHC CS
        PIF1 102 ktsliiwDEapmverecfealdrtlrdil 130
                  +++++ D a ++  e f ald++ r+ +
  KIR62208.1 149 ICRALVHDPAVLLMDEPFGALDAMTREYM 177
                 5788999***************9999866 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00025      0.14       3      21 ..      40      58 ..      38      63 .. 0.87
   2 ?   -2.6   0.0       8.1   4.4e+03     103     132 ..     189     219 ..     152     250 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00025
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                + + G++G+GKTtLl+ la
  KIR62208.1 40 ISVVGPSGCGKTTLLKILA 58
                6799***********9776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8.1
                 ......HHHHHCTTTTT-.-EEEEEEECCCH CS
       NACHT 103 qpvrtlLselirkkllpe.asllltvrpral 132
                  ++ +l ++ i+++++ +   ++l+ rp++ 
  KIR62208.1 189 GQTAVLVTHSIPEAVFLSdRVVVLSPRPGRI 219
                 4444555555555443330333444455444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2    0.0002      0.11       1      20 [.      40      59 ..      40      88 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0002
      AAA_18  1 IlltGtpGvGKttlakeLsk 20
                I + G++G+GKttl k L+ 
  KIR62208.1 40 ISVVGPSGCGKTTLLKILAG 59
                6799*************964 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00022      0.12      22      38 ..      39      55 ..      30      65 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00022
                EEEEEESTTSSHHHHHH CS
      NB-ARC 22 vvalvGmgGvGKttlak 38
                ++++vG  G+GKttl+k
  KIR62208.1 39 FISVVGPSGCGKTTLLK 55
                89*************86 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00041      0.22       1      19 [.      39      57 ..      39      80 .. 0.84
   2 ?   -2.2   0.0       5.2   2.8e+03     103     133 ..     150     180 ..     128     182 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00041
         PRK  1 vIgvagsSGaGkttvarkl 19
                +I+v g+SG+Gktt+ + l
  KIR62208.1 39 FISVVGPSGCGKTTLLKIL 57
                69************98765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.2
         PRK 103 keeliegadvlviEGlhalydervaelldlk 133
                  + l++++ vl+++  +++ d   +e+++++
  KIR62208.1 150 CRALVHDPAVLLMDEPFGALDAMTREYMNVE 180
                 4678889999999999999999999999875 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00036       0.2       4      25 ..      40      61 ..      38      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00036
   PduV-EutP  4 illiGkvgsGKttLtqalkgee 25
                i ++G++g+GKttL + l g +
  KIR62208.1 40 ISVVGPSGCGKTTLLKILAGLS 61
                5689************998865 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0004      0.21      24      52 ..      39      67 ..      22     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0004
  Mg_chelatase 24 nlllvGppGsGKtmlakrlpsllpplsee 52
                   + +vGp+G+GKt l k l++l p+   +
    KIR62208.1 39 FISVVGPSGCGKTTLLKILAGLSPKTAGT 67
                  56789*****************9987665 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00081      0.44       2      19 ..      40      57 ..      39      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00081
        MobB  2 lgivgksgsGKTtLlekl 19
                +++vg sg+GKTtLl+ l
  KIR62208.1 40 ISVVGPSGCGKTTLLKIL 57
                789************876 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00055       0.3      15      53 ..      36      74 ..      24      83 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00055
  Zeta_toxin 15 rPklillgGqpGAGKselaellkdelerqgnvvrldpDd 53
                r   i ++G +G+GK++l++ l+    ++ + vr+ +++
  KIR62208.1 36 RGEFISVVGPSGCGKTTLLKILAGLSPKTAGTVRIAGTE 74
                55678899***************9999999***998876 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00061      0.33       4      41 ..      40      77 ..      38      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00061
                EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSS CS
       SRP54  4 illvGlqGaGKTttlaKLaallkkegkkvllvaaDtfR 41
                i +vG+ G GKTt l  La l  k + +v ++ + + R
  KIR62208.1 40 ISVVGPSGCGKTTLLKILAGLSPKTAGTVRIAGTEVAR 77
                679****************9999999999998887777 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2    0.0012      0.63       3      23 ..      38      58 ..      36      73 .. 0.85
   2 ?   -2.3   0.0         8   4.4e+03      31      47 ..     220     236 ..     217     252 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0012
      AAA_14  3 kilvitGaRrvGKTtllkqli 23
                + + ++G+  +GKTtllk l+
  KIR62208.1 38 EFISVVGPSGCGKTTLLKILA 58
                56889***********99776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 8
      AAA_14  31 esilyinldderdkkla 47 
                  +il i+ld++rd    
  KIR62208.1 220 AEILTIDLDRPRDLGVM 236
                 57999999999996644 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.007       3.8      17      35 ..      35      53 ..      11      77 .. 0.92
   2 ?    1.9   0.0      0.23   1.2e+02     138     163 ..     171     197 ..     167     208 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.007
      ATPase 17 pegrvvlitGepGtGKtif 35
                 +g+ + ++G +G+GKt++
  KIR62208.1 35 RRGEFISVVGPSGCGKTTL 53
                68999************97 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.23
      ATPase 138 avaReilr.qlvrvlkklgvTailvse 163
                 a++Re++  +l+r+ ++ g+Ta+lv+ 
  KIR62208.1 171 AMTREYMNvELLRIWRESGQTAVLVTH 197
                 788999963788888*********986 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00063      0.34      22      39 ..      40      57 ..      25      70 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00063
      AAA_23 22 tlItGpNGaGKTTildAi 39
                  ++Gp G+GKTT+l  +
  KIR62208.1 40 ISVVGPSGCGKTTLLKIL 57
                5689**********9765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1    0.0008      0.44       2      19 ..      41      58 ..      40      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0008
  RNA_helicase  2 wlyGpsgeGKStlakeLa 19
                   ++Gpsg+GK+tl k La
    KIR62208.1 41 SVVGPSGCGKTTLLKILA 58
                  689**********99976 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00095      0.52       1      19 [.      40      58 ..      40      67 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00095
                EEEEESTTSSHHHHHHHHH CS
         dNK  1 ivveGnIgaGKstlvklLs 19
                i+v G+ g+GK+tl+k+L+
  KIR62208.1 40 ISVVGPSGCGKTTLLKILA 58
                8999*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 1664.16
//
Query:       KIR62209.1  [L=764]
Description: beta-D-glucosideglucohydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-67  226.0   0.0    9.3e-67  225.7   0.0    1.1  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
      1e-42  146.4   0.0    1.5e-42  145.8   0.0    1.3  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    7.3e-19   67.7   0.2    1.9e-18   66.3   0.2    1.8  1  Fn3-like         Fibronectin type III-like domain
  ------ inclusion threshold ------
      0.016   15.5   0.4      0.058   13.7   0.4    1.9  1  DUF11            Domain of unknown function DUF11


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.7   0.0   2.1e-70   9.3e-67       2     318 ..      27     330 ..      26     331 .. 0.93

  Alignments for each domain:
  == domain 1  score: 225.7 bits;  conditional E-value: 2.1e-70
                    HHHHHHHTEE-B-SE-S--HHHHHHHHHH--SEEE--GGGTSSHHHHHHHHHHHHHH-SS....S--EEEE---BTTB---SSS---S-HHHHHHH CS
  Glyco_hydro_3   2 ldekigqLlvvevseekkseeaaellkkyqvGgiilfaenledtkqleelieaarqaseksrlgiPlllavDqegGlvqrlgegtlfPsalalaat 97 
                    l ek+gq+ +++      + + a+ +   +vG+i+            ++++ea +   +++rl iPll++ D+++G    +  +t+fP +l++aat
     KIR62209.1  27 LAEKVGQMMQLD-----SHGDLADHILGRHVGSILHT--------SPARVVEAHELT-ARTRLRIPLLVGEDCIHGHS-FFPGATIFPTQLGMAAT 107
                    789******988.....58899*************93........555555544443.344788*************9.45445************ PP

                    T-HHHHHHHHHHHHHHHHHHT--EE---B-----STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHT......T-EEEEEEETTGTT-SSETTTSEE CS
  Glyco_hydro_3  98 ssldlikelgriiakelralgididfaPvvdvnrdprngigvrsFsedpelvaalaaamvkGlqga......gvaatvKHFpghGdgavdshkelp 187
                    +s++l++ +gr++a e++ +g++++f+Pv+ ++rd r+g+ +++F+edp+l + laaamv+G+qg+       v+at+KHF+g+  ++++++++  
     KIR62209.1 108 WSPELVERVGRVTAVEVAPTGVHWTFSPVLCIARDLRWGRVDETFGEDPFLIGELAAAMVRGYQGEdladptAVLATAKHFAGY--SETQGGRDAT 201
                    ************************************************************************************..********** PP

                    B----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS-....HHHHHHHHHHHT- CS
  Glyco_hydro_3 188 tvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvvvsDalamkeiadrgg....keeavvlaLkAGv 279
                    + d s+++lr+  l pf+   ++g +  M +   +++ dg+p t + +lltdvLR e+G+ G+ v+D+ +++ +    +    +++a+++a++AG+
     KIR62209.1 202 EADLSRRKLRAWFLPPFERVAREGCRTFMLG---YQSTDGVPITVNDWLLTDVLRGEWGWTGMLVTDWDNVGRMVWEQRvqpdHAHAAAAAVRAGN 294
                    *******************************...**************************************99887777788999********** PP

                    SBEES-S---SGHHHHHHHHHTTSS-HHHHHHHHHHHHH CS
  Glyco_hydro_3 280 DilLvpeertseikalkkavkeGeltearidesvrrvlr 318
                    ++++  ++     ++ ++av+ G l e+ +d++v r+l 
     KIR62209.1 295 NMIMTTPQFF---QGAQDAVARGLLVESDLDDAVSRILA 330
                    *********6...************************97 PP

>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.8   0.0   3.5e-46   1.5e-42       1     204 []     370     642 ..     370     642 .. 0.93

  Alignments for each domain:
  == domain 1  score: 145.8 bits;  conditional E-value: 3.5e-46
                      -EEEEEGSS--S-S-STE...............EEEEESGGGS.SS-SS-BSSS--..........--S---HHHHHHHHHHH........... CS
                      xxxxxxxxxxxxxxxxxx...............xxxxxxxxxx.xxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxx.......... RF
  Glyco_hydro_3_C   1 iVLLkNennlLPLkkklk...............kiaviGpnad.etlklGggsgtv..........tvsylvsplegirerles.......... 58 
                      +VLL+N+ ++LPL+   +               ++av+Gp ad ++++lG++ g+             ++++++l+g+r+ +++          
       KIR62209.1 370 LVLLRND-GVLPLAGGFTaddtgrargdggppcTVAVVGPLADdAQTQLGDWAGSSgqadwmrdgqPRDMITTVLDGLRAHVPDgwavtyarga 462
                      59*****.*****7666678999********************88999*****999988888888755567799********99********** PP

                      ...............................-HHHHHHHHHHHTSEEEEEEEES...SB-TTSCSGHHSSTTHHHHHHHHHHTTSSEEEEEEES CS
                      ..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  59 ..............................eegideaveaakeaDvavvvvgedpeiegEgvDrtdlalpeaqdelikavaaanknvvvvlqsg 122
                                                    ++ i+ av+aa++aD++v+vvg+  e+ gEg+  ++l+l ++q +l++a+aa+++++vvvl ++
       KIR62209.1 463 diltmapdpegelfpdgqprpqvvlpcppdAALIAGAVAAAERADYVVAVVGDRIELVGEGCSTATLNLVGGQIALLDALAATGTPMVVVLLAS 556
                      ******************************99**********************999************************************* PP

                      SGG--TTTGTTTEEEEEE-S--GCCHHHHHHHHHTTSS---B--SS-EESSSGGG................S.-----SETTTT-BCH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xx...xx.xxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C 123 gpvavepwkeenvkAilaawlpGqegGtaiadvLfGdvnPsGkLpvtfpksledlpddyyeek..dt...yk.fegtplYpeGlglsY 204
                      +p+++ +    +++A+l+++ pG +gG+a+a++L+G v+P+G+Lp++f++++++ p+ yy++   ++   y+  +++p + +G glsY
       KIR62209.1 557 KPLVLPDS-ALDAAALLWVANPGMRGGRAVAELLLGLVEPAGRLPISFARHVGQQPT-YYNQIrgQHgsrYAdLTQRPAFAFGDGLSY 642
                      *****555.779*******************************************99.77776651156788899************9 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.2   4.3e-22   1.9e-18       1      71 []     679     748 ..     679     748 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 4.3e-22
                 EEEEEEEEESS-STTSBS-EEEEEEEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEESSS CS
    Fn3-like   1 evvqlYvsdpessverpvkeLkgFekveLapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvgtss 71 
                 e+vq Yvsd  +sv+   keLk+F+ veL+pG+ +tv++++++ d +++d + + +vvepG++t+lvg ss
  KIR62209.1 679 ETVQAYVSDDVTSVSWADKELKAFRQVELEPGQAATVRIDVPVADCAIVDGR-GVRVVEPGDFTLLVGPSS 748
                 89**************************************************.899*************98 PP

>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.4   1.3e-05     0.058       6      79 ..     653     722 ..     648     726 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
       DUF11   6 dksevrpGdtvtytltvtNtgpasangvvvtDtlPaglayvsvsasqgtasaltsv..gsLeagesatlsftvrvt 79 
                  + +++p+dtv+  +tv+Ntg+++    +v+  +   ++ vs   +    +a   +   +Le+g+ at+++ v v+
  KIR62209.1 653 APGDLAPTDTVRAEVTVRNTGARPV-LETVQAYVSDDVTSVSWADK--ELKA---FrqVELEPGQAATVRIDVPVA 722
                 556789999****************.45566667778888887777..2222...134699********9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 4943.04
//
Query:       KIR62210.1  [L=246]
Description: nitrate ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-17   62.6  12.7    5.6e-17   62.1  12.7    1.3  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1  12.7   3.1e-21   5.6e-17       2     171 ..      68     225 ..      57     239 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 3.1e-21
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqif 98 
                   + +Gi ++  r+ +l+++l p + ++l++P +v a+l v       ++g + l  i++++l aap  ++++++++rs++  l e a+++ +  w+++
    KIR62210.1  68 VAAGIAMG--RSEWLRRFLEPAVLIGLATPGLVKALLCV------IWFGVSLLNPILTVALAAAPALTINVAQGVRSVDPALGEMAHVYRLDAWTRL 156
                   56788888..*****************************......9*************************************************** PP

  BPD_transp_1  99 rkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlv 171
                   r+v lP+++p ++tg++l ++ +++  vl+e++g   G+g++l    ++ +++  +    + +v++ l++ ++
    KIR62210.1 157 RYVWLPAIVPDLFTGARLGIAMAWKVIVLVEIFGLADGVGYQLNLEFSQHNVAGVL----AWTVAFALVMAAI 225
                   ******************************************99999999999444....3333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1933.00
//
Query:       KIR62211.1  [L=306]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-17   61.6  12.2    7.8e-17   61.6  12.2    1.7  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.07   1.3e+03     111     128 ..      34      51 ..      14      70 .. 0.59
   2 !   61.6  12.2   4.4e-21   7.8e-17       4     178 ..     105     301 ..     102     305 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.07
  BPD_transp_1 111 itglilafggllggavll 128
                   + +++ +f++ lg av++
    KIR62211.1  34 AVFVAAVFAYPLGFAVWM 51 
                   223333333333333333 PP

  == domain 2  score: 61.6 bits;  conditional E-value: 4.4e-21
  BPD_transp_1   4 lGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvf.................vilsilghlilpviillllsaapyvrlirraalrslpk 81 
                   l++l+a  ln+  + + +lr+ ++v++ + s++++ +++++f                 ++l   g ++  +++ +++ ++++++l++ aal+++pk
    KIR62211.1 105 LALLLAvaLNKVVRARAFLRVAFYVPYVTASVAVVGVWLFLFntdglvnrvlgplapdpSWLVNEGLAMPVIAVFVAWKQLGFFILLYLAALQNVPK 201
                   677888668888888999*********9999999999998889****************999999999999************************** PP

  BPD_transp_1  82 dlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG...lgtllleailgydyseisnggvlalviavlllnlvadil 175
                   +l+e a ++Gas w +fr v++P++ p ++  +ila +   + ++ +++l++++G    +   + +  ++ +++++  +++a+++++++ +lv+ ++
    KIR62211.1 202 ELYESAAVDGASAWARFRSVTVPAVRPATALVVILATITGANLFTEPYLLTGGGGpngSSASPVLVMYQRGIQQGQPDVAAAIGVLLVIGVLVVSAI 298
                   ***************************************************9999*77555555555555555555455555555555555666555 PP

  BPD_transp_1 176 qrl 178
                   +r 
    KIR62211.1 299 NRR 301
                   554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2427.78
//
Query:       KIR62212.1  [L=419]
Description: sugar ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-35  121.1  13.7    9.8e-35  120.7  13.7    1.2  1  SBP_bac_8  Bacterial extracellular solute-binding protein
    1.6e-30  107.1  16.3    2.7e-30  106.4  16.3    1.3  1  SBP_bac_1  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7  13.7   1.1e-38   9.8e-35       1     280 [.      46     361 ..      46     363 .. 0.83

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 1.1e-38
                 HHHHHHHHH-.TEEEEEEE-.-SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH.-HH....HHHTT.--TS.----EEEE CS
   SBP_bac_8   1 klakefekkt.gvkvnvvta.asndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnldd.ltd....alaav.gydgklygvPyas 91 
                 ++++++++++ + +++++++ a+  +e+ + aa+ ag+ap + ++  + +a++++ ++g l++l+++  ++d +t     ++ ++ + dgk+y +P+ s
  KIR62212.1  46 AMVQAWNAQHaDQTITAQEIpAGTSSEEVIGAAITAGNAPCL-IFNTAPAAVPQFQKQGGLVALDSFAGATDyITErtgeTAGQYkSPDGKFYQLPWKS 143
                 5899****************99999***************87.6888899***************88555553444544455555456**********8 PP

                 EEE-EEEEEHHHHHHS.......---BHHHHHHHHHHHH..HH-...SEGG---G.GGGGGTHH......ETTEE-.--H.....HHH.HHHHHHHHHH CS
   SBP_bac_8  92 etpyvliynkdlleka......edpktwdellaaakklk..gkf...glpdpasg.wlqaalla......kdgksl.dddg...gkdglkealellkkl 168
                 + p +++ynk+++ ka       + +t+d++laaa k+k  g++   ++p+p+s  +  ++ ++       +gk+l d+ +    +++  +++e++k+l
  KIR62212.1 144 N-PVMIFYNKKVFAKAgldpekPQLATYDQFLAAARKIKssGAApaaIYPAPTSEfFQSWFDFYplfaaeTGGKQLlDGGKpqfASPEGQRVAEFWKTL 241
                 7.79***********9999988888*************866776887889988753445666666668984444442443366667888********** PP

                 HHTT-EE-S..--SSTTTTTSBSEEEE-TTHHHHHH-TTTSEEEE.--......S--..EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHH CS
   SBP_bac_8 169 kdngktydtgadavsefanGevaftingswdiaaaqkagkklgai.vp......kqg..sfaggkglavpknaknedlaAldFlkwltspenqaalaek 258
                 ++ g  ++   +  + fa+G++a++i g+w+i  +++ +  +ga+ vp      +++  +f+++k++a+++ + n++  A+d l+++ts+e+  al ++
  KIR62212.1 242 YAEGLAPKEKYNG-DSFADGKAAMAIVGPWAISVYRD-KVSWGAVpVPtstgipADQvrTFSDAKNVAMYSACQNRAT-AWDVLTFATSKEQDGALLTA 337
                 ****988654444.69********************9.789999977744444433377******************6.******************** PP

                 H---BS-S-TTT..HHHHHH-HHH CS
   SBP_bac_8 259 tgyipvnksaal..spevkkdpal 280
                 tg  p + ++++  +++++k+pa 
  KIR62212.1 338 TGQMPLRADLPAayPDYFAKNPAY 361
                 ***********999999****986 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4  16.3     3e-34   2.7e-30      11     313 ..      45     330 ..      36     332 .. 0.88

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 3e-34
                 HHHHHHHHHHHHTTEEEEEEEECHHHHHH.HHHHHHHTTSSSCSEEEE.CGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE.EE CS
   SBP_bac_1  11 qalvakafekehpgikVeiesvgsgslaq.kltlaiaaGdgpaDviav.dndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkilds.kv 106
                 +a+v +a++++h + +++ + ++ g+  +  + +ai aG++p  +i+  +++ ++++ k+g l  ld++++a  + +        ++  +++ + s  +
  KIR62212.1  45 KAMV-QAWNAQHADQTITAQEIPAGTSSEeVIGAAITAGNAP-CLIFNtAPAAVPQFQKQGGLVALDSFAGATDYITE------RTG-ETAGQYKSpDG 134
                 5666.99***************99999999999*******99.666666***********************965553......333.44455555466 PP

                 .ES.EEEEE.EEEEEEETTTHHCTTGGG....SHBHHHHHHHHHHHHHHCTCT..HCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT.HHCSHHHHS CS
   SBP_bac_1 107 .ly.vPlya.argliYNkdlfekagldp....pwtWdelveaakklkekgkkp..iggarggsasgtayyfalalakslggkvfdkdgg.gldnpegvt 195
                   y +P+ + + +++YNk++f+kagldp      t+d++++aa+k+k +g +p  i+ a ++   + ++ f+  +a+  ggk   + g+ ++++peg+ 
  KIR62212.1 135 kFYqLPWKSnPVMIFYNKKVFAKAGLDPekpqLATYDQFLAAARKIKSSGAAPaaIYPAPTSEFFQSWFDFYPLFAAETGGKQLLDGGKpQFASPEGQR 233
                 89******88********************9999***************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE....EEEEEEE CS
   SBP_bac_1 196 aatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi....lgaygla 290
                  a++++ ly         + +++e ++g++    f+ G+aamaivg+wa             +  ++++   +g+ p+P+ +g + ++     +a ++a
  KIR62212.1 234 VAEFWKTLY-------AEGLAPKEKYNGDS----FADGKAAMAIVGPWA-------------ISVYRDK-VSWGAVPVPTSTGIPADQvrtfSDAKNVA 307
                 *********.......66678888888888....99************9.............4444444.579999999999999999999888888** PP

                 EBTTCSTHHHHHHHHHHHTSHHH CS
   SBP_bac_1 291 ipkgsknpeaAkkFldfllspea 313
                 ++++ +n++ A+++l+f++s+e+
  KIR62212.1 308 MYSACQNRATAWDVLTFATSKEQ 330
                 *********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3342.66
//
Query:       KIR62213.1  [L=346]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-37  127.4   0.2    9.9e-37  126.8   0.2    1.3  1  Peripla_BP_3  Periplasmic binding protein-like domain
    3.8e-15   56.1   0.0    4.7e-15   55.8   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    3.4e-14   52.4   0.0    8.3e-14   51.1   0.0    1.7  1  LacI          Bacterial regulatory proteins, lacI family
    0.00016   21.4   0.0    0.00024   20.8   0.0    1.3  1  Peripla_BP_4  Periplasmic binding protein domain
     0.0045   17.3   4.3     0.0074   16.6   1.0    2.9  3  HTH_31        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.015   15.0   0.1      0.054   13.3   0.1    1.9  1  TetR_N        Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8   0.2   3.3e-40   9.9e-37       1     166 []     180     338 ..     180     338 .. 0.90

  Alignments for each domain:
  == domain 1  score: 126.8 bits;  conditional E-value: 3.3e-40
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH.HHCC-SEEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqal.klaalPtAviaasDelAlgvlqalrea 96 
                   v+hL+ lGhrria ++  g+ +  +   r+++++qal+++gl+  ++v    d++aa++a+a     al +++++PtA++  +D +A++ l+++ + 
    KIR62213.1 180 VAHLAGLGHRRIAHVS--GPLHFLHGSVRRQAWEQALADAGLTAGPCVES--DFSAAGGAQATR---ALlDTGDPPTAIVYGNDLMAIAGLSVAVQL 269
                   78**************..999999*******************8877664..455555555544...3337778*********************** PP

                   T--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  97 glrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   g+rvP++ls++gfdd+ela++++P lTtvr+++ + Graaa++lldl++g++ +  ++ ++p lv+R+St
    KIR62213.1 270 GIRVPDELSITGFDDTELAGYVTPTLTTVRTDPFGWGRAAADALLDLIDGRPGADIPTPPAP-LVVRGST 338
                   ************************************************99999999998777.******8 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   1.6e-18   4.7e-15      11     259 ..      76     317 ..      66     331 .. 0.86

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 1.6e-18
                   T.....TSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EEEE- CS
  Peripla_BP_1  11 l.....dePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPcvipd 101
                   +      +Pf+ + ++g+++++++ g  ++l  +++ +  + ++ +l  a+++dg+ +  +    ++i   ae g+p + +++  d p   P  + d
    KIR62213.1  76 PpellgADPFYPSFIAGVERTLSDRGQSLVLQVVPDLSVEEaSYRRLATAERVDGVFVLDLRLGDPRIALLAELGLPAVTIGRP-DVPSNHPALLVD 171
                   44445579******************99988888887766679999999******9998777777******************9.9999******** PP

                   HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE-SSHHHHHHHH CS
  Peripla_BP_1 102 dtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..PeidaivaindeaalGav 196
                   d    + +  +L   gh+r ia ++gp   l    r+q +++ala+aGl        + + +  ++a+a  +ll  +  P+  aiv +nd +a+ + 
    KIR62213.1 172 DRPGVTAAVAHLAGLGHRR-IAHVSGPLHFLHGSVRRQAWEQALADAGL--TAGPCVESDFSAAGGAQATRALLDTGdpPT--AIVYGNDLMAIAGL 263
                   *******************.*****************************..7777778899999**************999..************** PP

                   HHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH CS
  Peripla_BP_1 197 lalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqki 259
                    ++ + G ++ ++e      s  ++d     +  +   + l++  +     Gr+a+d +l+ i
    KIR62213.1 264 SVAVQLG-IRVPDEL-----SITGFDDT---ELAGYVTPTLTTVRTDPFGWGRAAADALLDLI 317
                   *******.9999999.....77777655...44455556666666666777777777777766 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   2.8e-17   8.3e-14       1      46 []      10      55 ..      10      55 .. 0.98

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 2.8e-17
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                ti DVA++AGVSk +VS  Ln+++ V+eetr r++a+++ l+++P+
  KIR62213.1 10 TITDVAKAAGVSKGAVSFALNGRPGVAEETRARILAVAASLGWTPS 55
                8******************************************996 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     8e-08   0.00024     140     257 ..     205     320 ..     175     321 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 8e-08
                   HHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHH.TTTECEEEESSCCHHHCHHHHHHHTTT.TSTEE.EEEES-HHHHHHHHHTTSSEE CS
  Peripla_BP_4 140 eriegfrkvlkeypgikivaevaganwdaekaqqaleallt.anpldgilaandgmaegalealeaagl.agkvv.vtgqDatpealeaikdGtida 233
                    r ++ +++l++  g++  + v+  + +a+ + qa+ all   +p  +i+  nd ma++ l+   + g+  ++ + +tg+D t+  l+     t++ 
    KIR62213.1 205 VRRQAWEQALAD-AGLTAGPCVES-DFSAAGGAQATRALLDtGDPPTAIVYGNDLMAIAGLSVAVQLGIrVPDELsITGFDDTE--LAGYVTPTLT- 296
                   577888888888.67777776666.99**************655778888899*****99999999999755544699999775..5566677777. PP

                   EEE--HHHHHHHHHHHHHHHHTT- CS
  Peripla_BP_4 234 tvaqdpyelgyaavelavallkGk 257
                   tv  dp+++g+aa++++++l++G+
    KIR62213.1 297 TVRTDPFGWGRAAADALLDLIDGR 320
                   *********************996 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.0   2.5e-06    0.0074      17      63 ..      11      59 ..       8      66 .. 0.90
   2 ?   -0.9   0.0      0.75   2.2e+03      24      39 ..     112     127 ..     105     135 .. 0.73
   3 ?   -1.4   0.0         1   3.1e+03      43      58 ..     173     188 ..     157     194 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.5e-06
      HTH_31 17 qeevAerlgvsestlsrlEqGrrgrp...spavlealaralgldpaerae 63
                 ++vA+++gvs+  +s   +Gr g +   ++a + a+a  lg +p+ ra+
  KIR62213.1 11 ITDVAKAAGVSKGAVSFALNGRPG-VaeeTRARILAVAASLGWTPSHRAR 59
                679********************9.658888899999999****999986 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.75
      HTH_31  24 lgvsestlsrlEqGrr 39 
                 l v e+ ++rl +++r
  KIR62213.1 112 LSVEEASYRRLATAER 127
                 5678888888888877 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1
      HTH_31  43 spavlealaralgldp 58 
                 +p+v +a+a++ gl  
  KIR62213.1 173 RPGVTAAVAHLAGLGH 188
                 5566666666666544 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.8e-05     0.054      13      33 ..       5      25 ..       3      28 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.8e-05
                HTTT--HHHHHHHHTSSHHHH CS
      TetR_N 13 GydattvreIAkrAGvskgal 33
                G ++ t+ ++Ak+AGvskga+
  KIR62213.1  5 GPSRPTITDVAKAAGVSKGAV 25
                67777999***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2530.40
//
Query:       KIR62214.1  [L=366]
Description: hypothetical protein TK50_28320 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.074   12.3   0.3      0.074   12.3   0.3    2.3  3  CcmH      Cytochrome C biogenesis protein


Domain annotation for each model (and alignments):
>> CcmH  Cytochrome C biogenesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1     0.057     1e+03      98     124 ..      12      40 ..       5      58 .. 0.67
   2 ?   12.3   0.3   4.1e-06     0.074      95     124 ..     183     212 ..     180     251 .. 0.90
   3 ?   -3.6   0.2      0.35   6.3e+03     102     118 ..     339     355 ..     338     360 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.057
                 XXXXX..XXXXXXXXXXXXXXXXXXXXXX CS
        CcmH  98 lLWlg..Pllllllgllvlllllrrrkkk 124
                 lLW++    ++ l+g+l+++l ++r++++
  KIR62214.1  12 LLWALlaANAVALAGCLAVFLGVQRTTEA 40 
                 56754114556667777777777776644 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.1e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        CcmH  95 stllLWlgPllllllgllvlllllrrrkkk 124
                 +t+lLWl+P+l+l + l+++ l+lrrr ++
  KIR62214.1 183 ATILLWLLPVLALGALLVAAQLFLRRRFRR 212
                 79****************999999998754 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 0.35
                 XXXXXXXXXXXXXXXXX CS
        CcmH 102 gPllllllgllvlllll 118
                 +P+++ll+++lv++ +l
  KIR62214.1 339 LPAAALLAAALVVVGFL 355
                 68888888888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2557.63
//
Query:       KIR62215.1  [L=453]
Description: serine hydroxymethyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.4e-128  428.2   0.0   2.8e-128  427.9   0.0    1.0  1  SHMT      Serine hydroxymethyltransferase


Domain annotation for each model (and alignments):
>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  427.9   0.0  1.6e-132  2.8e-128       2     398 ..      13     397 ..      12     398 .. 0.97

  Alignments for each domain:
  == domain 1  score: 427.9 bits;  conditional E-value: 1.6e-132
                 HHHTHHHHHHHHHHHHHHHHSEE-STT-----HHHHHHHTSGGGG----EETTEESSST-HHHHHHHHHHHHHHHHHCT-STTTEEEE---SSHHHHHH CS
        SHMT   2 eesdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGcefvdeveelaqdrakelfkldpakwgvnvqplsGsqanl 100
                 +++dp++ e++  e+ rq  +++l+as   + ++vl  + s   n  aeGyPG+ry+ Gce++d +e+la+dra+++f++     ++nvqp+s + an 
  KIR62215.1  13 ATTDPRLHEVLVGEQLRQAGTLSLVASCSPVDPSVLASQASAAVNVTAEGYPGRRYHAGCEVIDGIEQLAIDRARRAFGAR----YANVQPHSATTANY 107
                 679******************************************************************************....************** PP

                 HHHHHHT-TT-EEEEESCTTTSTGGGT-BTSS-B-SHHHHHSEEEEE-B-TTTSSB-HHHHHHHHHHH--SEEEEE-SST-S---HHHHHHHHHHTT-E CS
        SHMT 101 avytallepgdrilgldladGGhlthGakveskkisassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevgay 199
                 av ++llepgd++lg+ l +GGhlthG++        ++ +f++v y++d + glidy e+e+ a+e++Pk+iv+G++ay+r+id+ar+r+iad+vgay
  KIR62215.1 108 AVLSSLLEPGDTLLGMALDKGGHLTHGSPAAY-----AGRYFRAVGYGLD-DAGLIDYAEVERLAREHRPKVIVCGATAYPRQIDFARFRRIADRVGAY 200
                 *****************************999.....9************.9*********************************************** PP

                 EEEE-GGGHHHHHTTSS--GCCTSSEEEEESSSTT-S-S-EEEEEC-SEEEEETTTEEEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHCTSHHH CS
        SHMT 200 llvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillrkgvksvdktgkevleelekkinsavfPglqGGPlnhviaakavalkealepef 298
                 ll+d++h aGlv+ag++psP+++a+++tt thk l Gprgglil+ +   +   +gk    +l++ ++ +vfP  qG P   +iaaka al  a+ pef
  KIR62215.1 201 LLADISHTAGLVVAGLHPSPIDHAHLTTTCTHKQLYGPRGGLILAGRDADAPAPRGKG---TLAQFVQRTVFPYFQGAPVLNAIAAKARALDIATGPEF 296
                 **********************************************777776677776...8999999******************************* PP

                 HHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTS.STTTT-SEEEEESHHHHHTT--HHHHHHHH CS
        SHMT 299 kvyqkqvlknakalaealkekgyklvsgGtdnhlvlvdlrekgldGkraekvlekvnitankntvPgd.ksalvtsGlrlGtpaltsrgfkeedlekva 396
                 ++ +++++++a+a+a al + gy++vsgGtdnh+vl+dl+ ++++G  ae +le+++i +nkn vP d   alvt+GlrlGt ++++rg++++     a
  KIR62215.1 297 RATARRIVADARAMAAALADLGYAVVSGGTDNHIVLIDLSARRMTGLVAELALEECHIVVNKNRVPRDtTPALVTAGLRLGTNSIAARGMGTDAAVACA 395
                 ********************************************************************8889*******************99877766 PP

                 HH CS
        SHMT 397 kf 398
                 ++
  KIR62215.1 396 EL 397
                 65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3404.61
//
Query:       KIR62216.1  [L=347]
Description: hypothetical protein TK50_28450 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-09   37.4   7.5    1.1e-08   35.4   7.5    2.1  1  HisKA_3      Histidine kinase
    2.3e-07   31.3   0.0    1.6e-06   28.6   0.0    2.3  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    3.2e-06   27.1   0.0    7.1e-06   26.0   0.0    1.5  1  HATPase_c_2  Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   7.5   1.8e-12   1.1e-08       1      66 [.     148     213 ..     148     215 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 1.8e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLrpa 66 
                 ER+ri RELHD v++ + +   +l+l +   +++ ++a+ +l+++ +++r+al+ +R+l+++Lr++
  KIR62216.1 148 ERRRIGRELHDRVAHAIGVGLQHLDLHRIYQKRRSDRAEGKLDQAGRAMRDALSLTRALSEELRHS 213
                 9****************9999999988876799999****************************75 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.76   4.6e+03      47      88 ..     166     210 ..     162     241 .. 0.69
   2 !   28.6   0.0   2.6e-10   1.6e-06       6     110 ..     256     342 ..     252     344 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.76
                 SSSTTHHHTGTCSTTCH.HCSTCHTSTSSSH..HHHHHHHHHHHT CS
   HATPase_c  47 iGipkedlkklfekfsq.ddstkrggggtGl..Glsivkklvelm 88 
                  G+   dl+++ +k  +  ++ k ++ g+ +   ls+ ++l+e +
  KIR62216.1 166 VGLQHLDLHRIYQKRRSdRAEGKLDQAGRAMrdALSLTRALSEEL 210
                 555566666777733333455666666776677888888887744 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 2.6e-10
                 HHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEE CS
   HATPase_c   6 LrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttf 104
                 ++ +++++v Na+ + + +g+++v++++    l+  v+D G+G +++ ++                  +G Gl  +++ vel+gG++++   p +Gtt+
  KIR62216.1 256 IYLVLREAVRNALLH-SGSGRLDVSVEVCGTALTAAVRDHGRGFTPSPQD-----------------LSGGGLLSMRERVELVGGSLSICPGPAGGTTV 336
                 6789***********.8899999999986679**************8888.................77889*************************** PP

                 EEEEES CS
   HATPase_c 105 tftlpl 110
                  +++pl
  KIR62216.1 337 AICVPL 342
                 **9998 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.2e-09   7.1e-06      22      85 ..     246     305 ..     228     318 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.2e-09
  HATPase_c_2  22 aglseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpd 85 
                    ++++ ++ei l++ Ea+ Na  h   ++ + +vev+    ++alt+ v+D+G+gf+p++++ 
   KIR62216.1 246 RTVPQAIAEEIYLVLREAVRNALLHSGSGRLDVSVEVC----GTALTAAVRDHGRGFTPSPQDL 305
                  67899999*******************98888888888....999**************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2796.92
//
Query:       KIR62217.1  [L=264]
Description: hypothetical protein TK50_28460 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-15   57.7   4.0    2.8e-15   57.0   4.0    1.2  1  BTAD         Bacterial transcriptional activator domain
    2.1e-09   37.3   0.0      9e-09   35.3   0.0    2.0  2  Trans_reg_C  Transcriptional regulatory protein, C terminal
     0.0017   19.0   3.5        4.4    8.4   0.1    3.6  3  TPR_14       Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.16   11.8   0.0       0.24   11.3   0.0    1.2  1  NT5C         5' nucleotidase, deoxy (Pyrimidine), cytosolic t


Domain annotation for each model (and alignments):
>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   4.0   6.1e-19   2.8e-15       1     141 [.      88     227 ..      88     230 .. 0.94

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 6.1e-19
                 BHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHH CS
        BTAD   1 vDlarfealvaagraalaagdpeeaaelleaAlalwrGpaladleagewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlh 99 
                 +D ++fea+v a+r+a + gd+ +a+++  +A++l++G++l++ e  +w+  +r++ ++  l+ l  l +  +   + +++++  +++++ +P++E+++
  KIR62217.1  88 IDTEEFEAAVDAAREAERTGDTGAALAAHHRAISLYQGDFLNG-ETADWVDEQRQWTRAMVLRSLHHLRADAMLRDDPRAVVTWCRRILSVDPYQEEAY 185
                 599****************************************.555****************9988877667778899******************** PP

                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH CS
        BTAD 100 rqlmrAlarsGrqaeALevYerlrrlLaeeLgvepgpelral 141
                 + l+     +G+ ++    Y+ ++++L++ L+v p  ++r++
  KIR62217.1 186 QNLLVVHGMLGELGQVRSWYDLCVQRLRDGLDVGPTGRTRQI 227
                 **************************************9986 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0     2e-12     9e-09       9      76 ..      13      80 ..       9      81 .. 0.85
   2 ?   -1.2   0.0      0.51   2.3e+03      48      60 ..     207     219 ..     206     234 .. 0.71

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 2e-12
                 HHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEE.TTTEEE CS
  Trans_reg_C  9 kefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetv.rgvGYr 76
                 k ++l ++L+ n+g+vv+re+L+e +w++++   + +++v+ + LR+ L+  +  +  +e v + vGY 
   KIR62217.1 13 KARNLFQFLVLNRGHVVPRERLYEVLWPDSDTDRSTSLKVAAHALRQILGSCPGGT-GVEIVyQDVGYL 80
                 7789**********************************************986444.555551456776 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.51
                  HHHHHHHHHHHTT CS
  Trans_reg_C  48 vhisrLRkkLedd 60 
                   +++rLR+ L+  
   KIR62217.1 207 LCVQRLRDGLDVG 219
                  6899***999875 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   1.0    0.0011       4.8       4      32 ..      80     108 ..      77     122 .. 0.66
   2 !    8.4   0.1   0.00098       4.4      14      41 ..     161     188 ..     144     191 .. 0.86
   3 ?   -3.3   0.0         4   1.8e+04      20      32 ..     208     220 ..     202     222 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0011
      TPR_14   4 llalaeallalGdpdeAiallrralalaP 32 
                 ll+ ae++   +++++A++++r+a +++ 
  KIR62217.1  80 LLRCAEICIDTEEFEAAVDAAREAERTGD 108
                 56778888888888888888888877643 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00098
      TPR_14  14 lGdpdeAiallrralalaPddaeawlll 41 
                 ++dp++ ++ +rr+l+ +P ++ea+  l
  KIR62217.1 161 RDDPRAVVTWCRRILSVDPYQEEAYQNL 188
                 679999******************9887 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 4
      TPR_14  20 AiallrralalaP 32 
                  ++ lr+ l+ +P
  KIR62217.1 208 CVQRLRDGLDVGP 220
                 5677888888777 PP

>> NT5C  5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.3e-05      0.24      77     153 ..     104     179 ..      86     190 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.3e-05
        NT5C  77 eeladegrlvvitaallqfyd...avkekveWldehlplipyrnlvlvkekdlvrgDvlidDapknleklrgrsilfdsp 153
                 e+  d g      ++++  y+     +e+ +W+de     ++   ++ +  + +r+D ++ D p+ +  +  r+il   p
  KIR62217.1 104 ERTGDTGAALAAHHRAISLYQgdfLNGETADWVDEQ---RQWTRAMVLRSLHHLRADAMLRDDPRAVVTW-CRRILSVDP 179
                 555555555555555555554444789********9...667777788899**************99876.566666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1913.37
//
Query:       KIR62218.1  [L=59]
Description: hypothetical protein TK50_28485 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0024   17.5   5.3     0.0025   17.5   5.3    1.0  1  DUF4131         Domain of unknown function (DUF4131)
  ------ inclusion threshold ------
      0.041   14.1   1.4      0.041   14.1   1.4    1.7  2  UPF0114         Uncharacterized protein family, UPF0114
      0.064   13.7   2.8      0.066   13.7   2.8    1.0  1  DUF4231         Protein of unknown function (DUF4231)
       0.16   10.7   4.8       0.16   10.7   4.8    1.0  1  DUF2207         Predicted membrane protein (DUF2207)
       0.17    9.8   5.7       0.16    9.9   5.7    1.0  1  DUF4175         Domain of unknown function (DUF4175)
       0.25   11.4   0.3       0.25   11.4   0.3    1.9  2  FixQ            Cbb3-type cytochrome oxidase component FixQ
       0.53   11.0   4.2       0.56   10.9   4.2    1.1  1  PrgI            PrgI family protein
       0.56   10.0   4.6       0.56   10.0   4.6    1.0  1  FA_desaturase   Fatty acid desaturase
       0.68   10.2   6.3       0.78   10.0   6.3    1.1  1  DUF3784         Domain of unknown function (DUF3784)
       0.85    9.7   4.4       0.84    9.8   4.4    1.1  1  DUF3742         Protein of unknown function (DUF3742)
       0.95    8.8   6.2        1.2    8.6   6.2    1.1  1  Zn_peptidase_2  Putative neutral zinc metallopeptidase
        1.1    8.9   5.9        1.2    8.7   5.9    1.0  1  Wzy_C           O-Antigen ligase
        1.9    7.8   7.3          2    7.7   7.3    1.0  1  DUF4191         Domain of unknown function (DUF4191)
        5.5    7.2   9.4        1.1    9.5   2.3    2.0  2  Pox_A14         Poxvirus virion envelope protein A14
        6.8    7.2  13.5          3    8.3  11.8    1.3  1  PhoR            Phosphate regulon sensor protein PhoR


Domain annotation for each model (and alignments):
>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   5.3   2.1e-06    0.0025       7      60 ..       5      55 ..       2      59 .] 0.85

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.1e-06
     DUF4131  7 lvllalllllllllllllrrrprrrvllllllllllallgfalrapqpnandls 60
                l+++++++ +l+ll+ll       r+l+++++++lla+++fa+   ++++++ +
  KIR62218.1  5 LWVVGVVAGALILLGLL---LEAVRWLVIIGVIALLAVIVFAFVKGRQAVQHRH 55
                68888888888888888...699*******************999988887766 PP

>> UPF0114  Uncharacterized protein family, UPF0114
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2      0.88     1e+03      10      23 ..       5      18 ..       2      25 .. 0.56
   2 ?   14.1   1.4   3.5e-05     0.041       3      32 ..      24      53 ..      21      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.88
     UPF0114 10 lavlglllaslllf 23
                l v+g+++++l+l+
  KIR62218.1  5 LWVVGVVAGALILL 18
                44555555555543 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 3.5e-05
     UPF0114  3 asRflvllavlglllaslllfikgvlelle 32
                a+R+lv+++v++ll++ ++ f+kg + + +
  KIR62218.1 24 AVRWLVIIGVIALLAVIVFAFVKGRQAVQH 53
                68*********************9887765 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.8   5.5e-05     0.066      21      74 ..       2      56 ..       1      59 [] 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.5e-05
     DUF4231 21 rlitivlgallpilvs.sklgagvsvlkiltallsalvailaaleeffrykerWr 74
                r ++ v+g+++ +l+  + l   v++l i+ +++ ++v++ a + +   ++ r  
  KIR62218.1  2 RAMLWVVGVVAGALILlGLLLEAVRWLVIIGVIALLAVIVFAFVKGRQAVQHRHS 56
                78999***********988999******************999999888887765 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.8   0.00013      0.16     390     432 ..       5      47 ..       1      56 [. 0.62

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
     DUF2207 390 liilglilillallllvlllvfllilllillliaiivlllfsr 432
                 l+++g++++ l+ll+l l  v +l+++ +++l+a+iv+++ ++
  KIR62218.1   5 LWVVGVVAGALILLGLLLEAVRWLVIIGVIALLAVIVFAFVKG 47 
                 3333333333333333334888888888888888888888755 PP

>> DUF4175  Domain of unknown function (DUF4175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.7   0.00013      0.16       9      54 ..       4      49 ..       1      59 [] 0.82

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00013
     DUF4175  9 pllsvlalflalsllglwqllpdllrlalllafalallaalvlplr 54
                +l++v +++ al llgl  ++ ++l++++++a+++++++a+v++  
  KIR62218.1  4 MLWVVGVVAGALILLGLLLEAVRWLVIIGVIALLAVIVFAFVKGRQ 49
                5677777888999****************************95443 PP

>> FixQ  Cbb3-type cytochrome oxidase component FixQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   1.4      0.99   1.2e+03      14      19 ..      13      18 ..       2      28 .. 0.53
   2 ?   11.4   0.3   0.00021      0.25      13      42 ..      27      57 ..      23      59 .] 0.83

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.99
        FixQ 14 gllflv 19
                g l+l+
  KIR62218.1 13 GALILL 18
                333444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00021
        FixQ 13 wgllflvllfygvviyafrpgnr.kdfedaA 42
                w+ ++ v+ +++v+++af +g++  ++++ A
  KIR62218.1 27 WLVIIGVIALLAVIVFAFVKGRQaVQHRHSA 57
                8888899**************9647777655 PP

>> PrgI  PrgI family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.2   0.00047      0.56      21      66 ..       3      47 ..       1      57 [. 0.63

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00047
        PrgI 21 QliflvlallvaiglylllrafleelasvlvillavP...vaalgfykk 66
                 ++++v++++   g+++ll  +l e+  +lvi+ ++    v++++f+k 
  KIR62218.1  3 AMLWVVGVVA---GALILLGLLL-EAVRWLVIIGVIAllaVIVFAFVKG 47
                5666666655...4444444555.6678999999777544777788864 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.6   0.00047      0.56     138     187 ..       4      55 ..       1      59 [] 0.55

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00047
  FA_desaturase 138 lawlllllawlglwlalllllglall....lwlvplllllfllalvl....nyveHyg 187
                    ++w+      +g+++++l llgl+l     l+++ +++ll+++++ +    + v+H +
     KIR62218.1   4 MLWV------VGVVAGALILLGLLLEavrwLVIIGVIALLAVIVFAFvkgrQAVQHRH 55 
                    2333......5555555555555544554555555555555555555679999*9987 PP

>> DUF3784  Domain of unknown function (DUF3784)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.3   0.00065      0.78      44      89 ..       2      46 ..       1      50 [. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00065
     DUF3784 44 rfmgivllligilflllgllsaiesealliialiviiiiviylivy 89
                r+m +v  +++ +++llgll      +l+ii++i++++++++++v 
  KIR62218.1  2 RAMLWVVGVVAGALILLGLL-LEAVRWLVIIGVIALLAVIVFAFVK 46
                66777777888899999999.8999999999999999999999886 PP

>> DUF3742  Protein of unknown function (DUF3742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.4   0.00071      0.84      50      88 ..      11      49 ..       1      59 [] 0.67

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00071
     DUF3742 50 wvvklavlGvllyvafWlalllvvvvlvawaarsvdtsd 88
                ++  l++lG+ll ++ Wl ++ v+++l++++ ++v+  +
  KIR62218.1 11 VAGALILLGLLLEAVRWLVIIGVIALLAVIVFAFVKGRQ 49
                23357899**********997777777777777666544 PP

>> Zn_peptidase_2  Putative neutral zinc metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   6.2   0.00096       1.2     125     158 ..      12      45 ..       2      46 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00096
  Zn_peptidase_2 125 slillliglllslsslllligiilfalavlfqlv 158
                     + +l+l+glll++ ++l++ig+i+++++++f +v
      KIR62218.1  12 AGALILLGLLLEAVRWLVIIGVIALLAVIVFAFV 45 
                     5689999****99999***************998 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   5.9     0.001       1.2      20      67 ..       8      52 ..       2      58 .. 0.43

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.001
       Wzy_C 20 igllvalivlliifykrripfllllgilvgvilliilfvlstnletlk 67
                +g+ va  ++l+ ++ + +++l++  i v+++l++i+f++ +  ++++
  KIR62218.1  8 VGV-VAGALILLGLLLEAVRWLVI--IGVIALLAVIVFAFVKGRQAVQ 52
                333.33333333333333323444..4444555555555555555544 PP

>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   7.3    0.0017         2      29      76 ..       4      51 ..       1      57 [. 0.66

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0017
     DUF4191 29 llaaflvvvvvfvvlglllgslilllilgillgllvalivltrraeka 76
                +l ++ vv+ ++++lglll+ + +l+i+g+++ l v ++ + +  +++
  KIR62218.1  4 MLWVVGVVAGALILLGLLLEAVRWLVIIGVIALLAVIVFAFVKGRQAV 51
                555555666677888999887888889999866666666665555444 PP

>> Pox_A14  Poxvirus virion envelope protein A14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.6      0.09   1.1e+02      47      65 ..       5      23 ..       1      27 [. 0.79
   2 ?    9.5   2.3    0.0009       1.1      14      32 ..      28      46 ..      23      58 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.09
     Pox_A14 47 lsivsFilgivillglllf 65
                l +v  + g++illglll 
  KIR62218.1  5 LWVVGVVAGALILLGLLLE 23
                45788899999****9985 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0009
     Pox_A14 14 vliaGiiLLilacifafvd 32
                ++i+G+i L + ++fafv 
  KIR62218.1 28 LVIIGVIALLAVIVFAFVK 46
                6899*************96 PP

>> PhoR  Phosphate regulon sensor protein PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  11.8    0.0025         3       3      40 ..       2      39 ..       1      49 [. 0.85

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0025
        PhoR  3 rrlllrlallllaallvgllvgalaallllalllllaw 40
                r+ l+ + +++ a++l+gll++a+ +l+++++++lla 
  KIR62218.1  2 RAMLWVVGVVAGALILLGLLLEAVRWLVIIGVIALLAV 39
                678999999999999**************888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1310  (0.073066); expected 358.6 (0.02)
Passed bias filter:                      671  (0.0374254); expected 358.6 (0.02)
Passed Vit filter:                       121  (0.00674884); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 436.73
//
Query:       KIR62219.1  [L=157]
Description: phosphinothricin acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-13   50.6   0.0    2.6e-13   50.4   0.0    1.0  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    2.9e-11   43.6   0.0    3.8e-11   43.3   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.9e-07   31.4   0.0    2.9e-07   30.8   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    5.9e-06   27.0   0.0    6.9e-06   26.8   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    1.8e-05   24.7   0.0    2.2e-05   24.4   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    0.00036   20.5   0.0     0.0015   18.5   0.0    1.8  2  FR47             FR47-like protein
  ------ inclusion threshold ------
      0.022   14.9   0.0       0.04   14.0   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
      0.046   13.7   0.0      0.076   13.0   0.0    1.4  1  Acetyltransf_13  ESCO1/2 acetyl-transferase
      0.064   13.3   0.1       0.12   12.5   0.1    1.4  1  Adeno_E4         Mastadenovirus early E4 13 kDa protein
       0.16   11.5   0.0       0.22   11.1   0.0    1.2  1  GNAT_acetyltran  GNAT acetyltransferase


Domain annotation for each model (and alignments):
>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   1.4e-16   2.6e-13       7     154 ..       4     147 ..       2     148 .. 0.93

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 1.4e-16
  Acetyltransf_4   7 eDakeilaiyaeyvvntaitfeyevssveefe.kflealdsekeyvflvaesdrivGyaylgqfkkr.akdwkaelsvylaerdnnkeglgreli 99 
                     +Da+  laiy+         fe + ++ e f+  +l+a+     ++  v+++d++ G  +++    r  + + +e svy++  +++ +g++r l+
      KIR62219.1   4 ADAAPVLAIYQAGLDGGDASFETVAPTWEAFDaSRLAAH-----RLVAVDDADTVLGWVAVSPTSTRpVYAGVVEHSVYVD-PAARGRGVARLLL 92 
                     588888888887766678889999999999998999998.....9999********************************6.89*********** PP

  Acetyltransf_4 100 daleqvlkeqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiDmi 154
                     dal+    + +i ++   i+ +n++s ++h++ GF+ vg  ++++   grw D +
      KIR62219.1  93 DALITGTEAAGIWTIQSGIFPENAASLALHARAGFRTVGVRERVGRHHGRWRDVV 147
                     ***************************************************9965 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   2.1e-14   3.8e-11      20     117 .]      29     127 ..      16     127 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 2.1e-14
                     HHHHHHHHHHSTTCEEEEEEETTEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHH CS
  Acetyltransf_1  20 seeefeesfsleaegllvaeedgeliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYe 113
                     + +e ++  +l a +l+++ + ++++G++ +++    + +  ++ +s++V+p++rg+G++++Ll+al+   +  gi  i   +++ n a+ +l+ 
      KIR62219.1  29 PTWEAFDASRLAAHRLVAVDDADTVLGWVAVSPTSTrPVYAGVVEHSVYVDPAARGRGVARLLLDALITGTEAAGIWTIQSGIFPENAASLALHA 123
                     4444444456666678889999***********999988899999************************666669988899*************9 PP

                     HTTE CS
  Acetyltransf_1 114 klGF 117
                     + GF
      KIR62219.1 124 RAGF 127
                     9**9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.6e-10   2.9e-07       6      75 ..      44     128 ..      38     129 .. 0.65

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.6e-10
                     EEEEET.TEEEEEEEEEEES.......TCTEE..EEE-GGGTTSSHHHHHHHH.....TTSEEEEE.EEEE..THHHHHHHHHHTTEE CS
  Acetyltransf_7   6 fVaedd.gkivGfialslld.......aeitr..laVdpeyrgkGiGraLlea.....aekgiile.qlel..naekaikfYeklGFe 75 
                     +Va dd + ++G +a+s+++           +  ++Vdp++rg+G++r Ll+a     ++ gi  + q+    ++ +++++ ++ GF+
      KIR62219.1  44 LVAVDDaDTVLGWVAVSPTStrpvyagVV--EhsVYVDPAARGRGVARLLLDAlitgtEAAGIW-TiQSGIfpENAASLALHARAGFR 128
                     55666669999**9999999998775333..146******************844443114432.12222222221445588888886 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   3.8e-09   6.9e-06      38     138 .]      31     128 ..       5     128 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.8e-09
  Acetyltransf_3  38 eewlerawaeeseeeg...ygwaivlkdtgviGsvglrdleeedee...aelgymlapsfwgkGyateavralleyafeelglerlvavidkeNe 126
                     +e ++       +++       a+ + dt v+G+v + + + ++     +e + +++p+++g+G+a+  + al++   e  g+ ++ + i +eN 
      KIR62219.1  31 WEAFD-------ASRLaahRLVAVDDADT-VLGWVAVSPTSTRPVYagvVEHSVYVDPAARGRGVARLLLDALITGT-EAAGIWTIQSGIFPENA 116
                     33333.......22221112356644666.8*******88887666889**************************99.8888999********** PP

  Acetyltransf_3 127 aSirvleklGfe 138
                     aS +++ ++Gf+
      KIR62219.1 117 ASLALHARAGFR 128
                     ***********6 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.2e-08   2.2e-05      29     112 ..      40     133 ..      15     140 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.2e-08
  Acetyltransf_10  29 gealllvaeeggkivGviel.rdgs.......hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkavgee 112
                       ++ l+++++ ++++G +++  ++          + ++Vdp++rg+G+++ Ll+a+++  e +gi + +  +   + +  ++  + GF++vg  
       KIR62219.1  40 AAHRLVAVDDADTVLGWVAVsPTSTrpvyagvVEHSVYVDPAARGRGVARLLLDALITGTEAAGIWTiQSGIFPENaASLALHARAGFRTVGVR 133
                      5677888899999999999954444899888555678***********************9999999966666666599999999999999654 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.45     8e+02      19      42 ..      49      72 ..      34      76 .. 0.67
   2 !   18.5   0.0   8.2e-07    0.0015      26      86 .]      75     136 ..      68     136 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.45
                -TTSSEEEEEE-GGG-SSSHHHHH CS
        FR47 19 kdggelgalqvlpehrrrGlgsrl 42
                  ++ lg + v p+  r  +++++
  KIR62219.1 49 DADTVLGWVAVSPTSTRPVYAGVV 72
                345889999999988887777766 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 8.2e-07
                 EEEE-GGG-SSSHHHHHHHHHHHHHHHS-S.-EEEEEETT-HHHHHHHHHHT-EEEEEEEEE CS
        FR47  26 alqvlpehrrrGlgsrlvkalakeiaergk.tvllvvvasNtpsirlyeklGfekieetewv 86 
                 +++v+p +r+rG +++l  al+ +  ++g+ t+   + ++N +s +l  + Gf+    +e+v
  KIR62219.1  75 SVYVDPAARGRGVARLLLDALITGTEAAGIwTIQSGIFPENAASLALHARAGFRTVGVRERV 136
                 699************************9985677889*****************98777765 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.2e-05      0.04      29      57 ..      75     103 ..      67     108 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.2e-05
  Acetyltransf_CG  29 hTeVpeelrGkGiAkkLvkaalddareeg 57 
                       ++V+++ rG+G+A+ L +a +  ++++g
       KIR62219.1  75 SVYVDPAARGRGVARLLLDALITGTEAAG 103
                      589****************9998877766 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.2e-05     0.076       3      30 ..      67      96 ..      65     109 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.2e-05
  Acetyltransf_13  3 alcGi..sriWvssshRrkgiAtkLldaar 30
                     ++ G+  + ++v +++R +g+A+ Llda++
       KIR62219.1 67 VYAGVveHSVYVDPAARGRGVARLLLDALI 96
                     5666644689*****************986 PP

>> Adeno_E4  Mastadenovirus early E4 13 kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   6.4e-05      0.12      12      51 ..      47      86 ..      37      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.4e-05
    Adeno_E4 12 cdsqnecvgwlgvaysavvdviraaahegvyiepeargrl 51
                +d  + ++gw++v+ ++   v        vy++p argr 
  KIR62219.1 47 VDDADTVLGWVAVSPTSTRPVYAGVVEHSVYVDPAARGRG 86
                57778899******************************95 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.22     169     235 ..      59     128 ..      47     132 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
  GNAT_acetyltran 169 vsgasSysvyekgieieidTkedyrrkgLAtivaaalileclkrglyPsWDaa...neaSvaLaekLGYe 235
                      vs  s+  vy + +e ++  +++ r++g A+++  ali      g+          n aS+aL  + G++
       KIR62219.1  59 VSPTSTRPVYAGVVEHSVYVDPAARGRGVARLLLDALITGTEAAGIWTIQSGIfpeNAASLALHARAGFR 128
                      77888888******************************98888777666665566677777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1247.38
//
Query:       KIR62220.1  [L=95]
Description: hypothetical protein TK50_28595 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 720.45
//
Query:       KIR62221.1  [L=766]
Description: lantibiotic dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-38  130.6  19.2      2e-27   95.6  14.5    2.1  2  Lant_dehydr_N  Lantibiotic dehydratase, N terminus


Domain annotation for each model (and alignments):
>> Lant_dehydr_N  Lantibiotic dehydratase, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6  14.5   1.1e-31     2e-27       1     531 [.      71     605 ..      71     624 .. 0.83
   2 !   37.8   0.2   3.6e-14   6.4e-10     575     652 ..     629     709 ..     611     710 .. 0.85

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 1.1e-31
  Lant_dehydr_N   1 adpvfreAialaSpsLaerlekllageasaekrrlrreklaeslakYllRmssRaTPfGlFAgvalgrf...gdaaesvrlgekhrarv..rlDme 91 
                    adp++reA+ +++++   +l+ l +++a a +r++rr++++++l+kY++R ++++ + G+F++ +++++   ++++++vr g +  +r+   + ++
     KIR62221.1  71 ADPLLREAVTWQNRNALLALDGLARAGADA-PRNVRRRDRERALLKYWQRYCGKNETVGFFGPSCWVTLdpeQADTARVRPGPALTRRRwvWFESW 165
                    69*************999999977777777.699999********************************98877777788888877777899**** PP

  Lant_dehydr_N  92 wLaalverlerdpellerLrvvannslyvrgdrlrlperavekegrayqevsvrateavravleaarepvtiaeLaerlaaefpeasaeeiealld 187
                     L a ++++ +d +++++ +  + + l +r+ ++  p+r             v  t++ +a+l+aa+  ++ ++L++  a       +++  alld
     KIR62221.1 166 ALSAYADTVGADLAVRQWWPPLLQPHLSLRDRSVLRPGR-----------PPVTLTPVEAALLAAADGHRSARDLVADPAIGLR--RPDDGYALLD 248
                    ***************************************...........99999**********************9666654..89999***** PP

  Lant_dehydr_N 188 eLveqglLvteLrpplt..gtdplghllerLeeipeaaellaelaalrdllarydaapegaaeaaleearrrmral...............saaar 266
                    +Lve++l++++  +p+   ++ +l++ ++++++ p++ +++a l++l+++ +++++a+ ++++  l++a++r++a+                 a+r
     KIR62221.1 249 RLVERELITWDANLPVApdAEAALAARIDAIGDEPARLAARAGLDRLQAARDEVADAAGDPDR--LRAALDRLDATfteltgqparrragqMYAGR 342
                    **********99988874355556666777788888888889999999999888888887775..666666666666666999*****9996689* PP

  Lant_dehydr_N 267 rllqvDlrldeaevvlpeeVlreveraaevllrlsprpagppalrdyherFlerYgt......gaeVPLlellDaetGlGypagyrgpsaaeeaae 356
                    +l + D+++d  +v+ ++ +l+++++ + vllr ++  ag    ++y ++F+e Y++      +a V L++l     Gl +++g+r      + a 
     KIR62221.1 343 TLCYEDTARD-LDVSFGAPLLADLAAPLAVLLRAARWLAGE-LEQAYGATFRELYEElradagDAPVGLADLWFLVQGLFWGTGERP---VDAVAA 433
                    **********.99999**********************996.48***********97555444678999999878899988888887...555555 PP

  Lant_dehydr_N 357 elsardelllelaqealldgqreivLtdedlaalaa....eeskaerlpaslelyfelladsaealdrGdfrlvl.lvtagsrsagallGRFahll 447
                    e +ar + l  la   l +g+ e++L  +dl +  a    +++++++  +  +   +l a++a+al+rGd++ vl + +a+ +s    +  F+  +
     KIR62221.1 434 EFAARWAGLFGLAD--LPEGATEVRLAVADLVDRVAqvfpDRPSDWTSGRLHSPDLQLCAADADALARGDYTAVLgELHAAWPSFDCQV--FTPSH 525
                    55555566666665..58999*****998887666669999****************************************99999999..***** PP

  Lant_dehydr_N 448 pe..eevqelaeeeaalptdaddalvAelsflPesrraanVlrrprl....lpyei.vlgehsdpeeerqlpldDLlVsadaerlvLvskr 531
                    p+    +++la+   +++          l f+ + +r   ++r+ +      +  + +l ++ ++++ r+lp  DL V+ +++rlv++ + 
     KIR62221.1 526 PDvaRLRAALAADLGEHR--------IRLLFPADWPR--RTSRTAEAltgpTDRQLaFLPAPGVDPD-RVLPTVDLTVTDEDGRLVVTARD 605
                    *94333333333333333........44666666666..3334333335556777779999999887.******************99876 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 3.6e-14
  Lant_dehydr_N 575 laeelpflPRVrygrviLsparWrLtaa..dlpasaakseewadalaawrerwrlPrrvvlaegD..nrllLdldnplhrel 652
                    l +++p++PR++ +r ++++++Wr t a   l + +a++ +++ a+++wr+ ++lP+rv++  g   ++ ++dl++p+++++
     KIR62221.1 629 LVAAAPYTPRITLDRLVVARQTWRTTVAgcGLADVTAER-DRFLAVRRWRRDLGLPERVYVKLGTetKPCFVDLSSPAYAAM 709
                    56788***********************66666666554.469****************998777336999*****999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5367.26
//
Query:       KIR62222.1  [L=769]
Description: lantibiotic dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-39  133.2  16.8    3.5e-28   98.1  12.7    2.5  2  Lant_dehydr_N  Lantibiotic dehydratase, N terminus


Domain annotation for each model (and alignments):
>> Lant_dehydr_N  Lantibiotic dehydratase, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1  12.7     2e-32   3.5e-28       1     450 [.      75     531 ..      75     561 .. 0.80
   2 !   36.4   0.1   9.2e-14   1.7e-09     575     653 .]     631     712 ..     613     712 .. 0.84

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 2e-32
  Lant_dehydr_N   1 adpvfreAialaSpsLaerlekllageasaekrrlrreklaeslakYllRmssRaTPfGlFAgvalgrf..gdaaesvrlgekhrarv..rlDmew 92 
                    adp++reA+ +++p++  +l+ ll++ ++ +++    +k++ ++++Y++R +++a ++G+F++v++g++  +++ +++  g++  ar+  +l ++ 
     KIR62222.1  75 ADPAVREAVTWQNPEMLVALDGLLRTDPAVRNKPR--RKREIAVLRYWQRYCGKAETIGFFGPVCWGTVdpDSPHTRLAPGTGLVARRevHLEAWA 168
                    69***********************9888863333..47******************************653344445555554444477****** PP

  Lant_dehydr_N  93 LaalverlerdpellerLrvvannslyvrgdrlrlperavekegrayqevsvrateavravleaarepvtiaeLaerlaaefpeasaeeiea...l 185
                    L a ++rl +dp+++++   v+ + l++ g rl  p +            +v+ t++ +++l+ ++  ++ +e+++rl ++  +a   ++++   l
     KIR62222.1 169 LSAYADRLAADPAVRRWWAPVLPPHLRLDGRRLCPPLA-----------PAVELTAVEARLLAGCDGRTPAREIVARLCEDG-DAGLRRADDgflL 252
                    **********************************9999...........9*******************************8.7876666655559 PP

  Lant_dehydr_N 186 ldeLveqglLvteLrppltgtdplghllerL...eeipeaaellaelaalrdllarydaapegaaea..aleearrrmral...........saaa 265
                    ld+Lve+glL+++  +p + +++++ l +r+   ++ + +a+l a l++l ++ ++++aa+ +++++  al ++ ++ +a              ++
     KIR62222.1 253 LDRLVERGLLTWDAGLPNN-PQAVRVLAARIaavGDPELRADLTAGLDRLTAARDAVAAAAGDPDRLaaALAALNAAFTAAtgesatrhggqMYTG 347
                    9************888866.9999999999977766666666666666666666666666655555444444444444444777999999995589 PP

  Lant_dehydr_N 266 rrllqvDlrldeaevvlpeeVlreveraaevllrlsprpagp..palrdyherFlerYgtgaeVPLlellDaetGlGypagyrgpsaaeeaaeels 359
                    r++++  + +d  ev+++ +Vl+ +++ + ++lr ++  ++   +a ++   +  +    +  V L+++     Gl +  + +        a +++
     KIR62222.1 348 RTVVYEETTRD-LEVAVGSAVLDALAAPLAIVLRAARWLTAEigAACERVLGELHAELAADGPVRLADMWSLAQGLILAPDGPV-------AVASA 435
                    99*********.9999********888888887777666655555566666666666667**********99999866666554.......44455 PP

  Lant_dehydr_N 360 ardelllelaqea.lldgqreivLtdedlaalaa....eeskaerlpaslelyfelladsaealdrGdfrlvl.lvtagsrsagallGRFahllpe 449
                      ++ ++el+  a +++ q+e++L ++dla  aa    +++++++ ++  +  ++++a+  +al+rG+f+lvl + + ++ +  + +  Fa  +p+
     KIR62222.1 436 GFTARWAELFGLAdVAADQPELRLRSADLAGRAAalfpATAPGWPTARVHSPDVQVAAAGVDALNRGEFQLVLgELHPATTPFDSAV--FAPFHPD 529
                    55555666665552445679**********99999999***********************************99998888887777..8877777 PP

  Lant_dehydr_N 450 .e 450
                     +
     KIR62222.1 530 pA 531
                    53 PP

  == domain 2  score: 36.4 bits;  conditional E-value: 9.2e-14
  Lant_dehydr_N 575 laeelpflPRVrygrviLsparWrLtaadlpasaakseew.adalaawrerwrlPrrvvlaegD..nrllLdldnplhrelL 653
                    l + +p +PR++++r ++++++Wr t ad   + a+ e++   a+++wr r++lP+rv++  g   ++ ++dl+ pl+++ L
     KIR62222.1 631 LLAPAPTTPRITIDRLVVARRTWRTTVADSGLAGATGESArYLAVRRWRARLGLPERVFVKVGTevKPCYVDLTGPLYAQSL 712
                    5566799****************9999966666555555559******************99995559******99998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 5017.62
//
Query:       KIR62223.1  [L=1835]
Description: acyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-72  244.3   0.0    1.4e-72  244.3   0.0    2.8  4  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
      1e-58  199.4   0.9      2e-58  198.4   0.9    1.4  1  Acyl_transf_1    Acyl transferase domain
    6.2e-45  153.3   0.3    1.3e-44  152.3   0.3    1.6  1  KR               KR domain
    4.6e-44  150.8   6.8    9.4e-44  149.8   6.8    1.6  1  PS-DH            Polyketide synthase dehydratase
    2.3e-39  134.1   0.3    7.1e-39  132.5   0.3    1.9  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    3.3e-18   66.2   0.0    6.7e-18   65.2   0.0    1.5  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    2.5e-15   56.6   0.0    7.6e-15   55.0   0.0    1.9  1  PP-binding       Phosphopantetheine attachment site
    7.2e-11   41.9   0.3    1.2e-08   34.6   0.0    2.5  2  adh_short        short chain dehydrogenase
    8.4e-10   38.6   0.1    2.9e-09   36.8   0.1    1.9  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    0.00036   20.0   0.0    0.00081   18.8   0.0    1.5  1  Thiolase_N       Thiolase, N-terminal domain
  ------ inclusion threshold ------
       0.23   11.7   0.1        2.2    8.5   0.0    2.5  3  NikR_C           NikR C terminal nickel binding domain


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.3   0.0   8.5e-76   1.4e-72       2     253 .]      16     265 ..      15     265 .. 0.93
   2 ?    0.0   0.0      0.31   5.1e+02      93     125 ..     300     335 ..     288     384 .. 0.70
   3 ?   -3.5   0.1       3.7     6e+03      98     157 ..     618     684 ..     610     718 .. 0.59
   4 ?   -3.9   0.0       4.8   7.9e+03      62     120 ..     767     826 ..     762     832 .. 0.73

  Alignments for each domain:
  == domain 1  score: 244.3 bits;  conditional E-value: 8.5e-76
                    --EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllleaa 96 
                    ep+aivG++ar+Pg+ dv+efw++L++g ++++el +++  a+++  pp+++ +   ++++ ++d  d+fd+ +fg+++reae +dpq+rl+le++
     KIR62223.1  16 EPIAIVGLAARLPGAADVHEFWRNLVDGVESVTELTREEQIARGV--PPEEVDDPGWVSRAPLVDgYDEFDAGLFGMTAREAEVTDPQHRLFLETC 109
                    79**********************************988888888..78888888888889*********************************** PP

                    HHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTT....GGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHH CS
  ketoacyl-synt  97 wealedagltpeeldgsrvgvfiGvgagdyaalaaldedgs....evkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqs 188
                    + al+dag++p++ dg +vgv++G+ga++y + ++l+++++    ++ +s  a+++ ++n++a+++sy+l+lrGps+tv+tACs+slva h+a+++
     KIR62223.1 110 YTALQDAGYDPARYDG-AVGVYAGTGAASYLNRNVLRNRKVggnpHSAVSI-ATSN-SPNYVATNVSYRLDLRGPSLTVHTACSTSLVAFHLACEA 202
                    ***********99776.8************777788877777886666666.8888.*************************************** PP

                    HHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 189 lrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    lr+ge+d+alaGGv+  l + ++ g++  g++spdgrc++fd++a+G+v+G GvG+ +Lkrl+da
     KIR62223.1 203 LRNGECDMALAGGVNIELPQAGYLGMD--GFTSPDGRCRPFDAAANGTVWGSGVGVTLLKRLSDA 265
                    ***************998888887766..79********************************98 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.31
                    HHHHHHHHHHHTS-HHTCTTGG...EEEEEEESSTH CS
  ketoacyl-synt  93 leaawealedagltpeeldgsr...vgvfiGvgagd 125
                    +ea+++a+  ag++p++++  +   +g  +G  ++ 
     KIR62223.1 300 MEAVAQAVGMAGIDPRTISYVEahgTGTAMGDPIEV 335
                    899**************9554433477777765553 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3.7
                    HHHHHHTS-HHTCTTGGEEEEEEESSTHH..........HHHHHHHHHTT....GGGSCTTHHHHHSTTHHHHH CS
  ketoacyl-synt  98 ealedagltpeeldgsrvgvfiGvgagdy..........aalaaldedgs....evkaspkavgavlanviagr 157
                     a+++ g+ p+++ g ++g +++++ +            a       +g+       +s+ av+  + +v+ag 
     KIR62223.1 618 VAWQRFGVRPAAMVGHSIGEYVAATVAGVldlpdalkvvA------ARGRlmqsLPAGSMLAVPL-DESVVAGL 684
                    5778888888888888888888888773333342233321......2222222234445555555.66666665 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 4.8
                    EE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHHHHHHHHHHHTS-HHTCTTGGEEEEEE CS
  ketoacyl-synt  62 ggfld.vddfdpeffgispreaeamdpqqrllleaawealedagltpeeldgsrvgvfiG 120
                    g++++ +++ dp+++  + r+  +   +   ll     al + g   +  +  r+ v  G
     KIR62223.1 767 GTWITdAQATDPAYWAAHLRQPVRFGDAVAALLAEGTWALVECGPGRQLANLARMQVAKG 826
                    778888999999999999999888888888888888888887775554444445555555 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.4   0.9   1.2e-61     2e-58       2     279 ..     542     823 ..     541     837 .. 0.92

  Alignments for each domain:
  == domain 1  score: 198.4 bits;  conditional E-value: 1.2e-61
                    EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T...TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHH CS
  Acyl_transf_1   2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe...glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGE 94 
                    f+fsGqGsQ aGMG++L+++++a+a v+++++e ++++ g+ + ++++        ll ++  +qpaL++v+ ala  ++ +Gvrpaa+vGHS+GE
     KIR62223.1 542 FLFSGQGSQFAGMGAQLYAEEPAYASVVDECAELLRAELGLDLRELILGRHPeaaELLAQTRYTQPALFVVEYALAVAWQRFGVRPAAMVGHSIGE 637
                    9********************************************987543336689*************************************** PP

                    HHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS.HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC..CCEEECCCEE CS
  Acyl_transf_1  95 lAaavvagalsseeallavvlrsrlmmqlagpgdmaavelaeeeeklrcqddvvgavansprrvvisgsqealrelvervskeg.vgalvenvnva 189
                    + aa vag l + +al++v+ r+rlm++l ++g m+av l+e+  +   ++ v+ a +n+p++ v++g+ +a++++ e +++   v  +  + + a
     KIR62223.1 638 YVAATVAGVLDLPDALKVVAARGRLMQSL-PAGSMLAVPLDESVVAGLLPEGVSIATVNGPGTCVVAGEADAVAAFAETLKATRkVKSKALRTSHA 732
                    *************************9776.89********88888888*********************************9887999999***** PP

                    CTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHH.HHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCC CS
  Acyl_transf_1 190 vhspqvdaiadalasaladiaprkpkvakisstsldes.serelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektl 279
                    +hsp +++i  +  + +a++a+r p++++ s +s     +++  + +yw+a lr+pvrf +av+++++ +  + ve  p  +l++  +  +
     KIR62223.1 733 FHSPMMEPILAEFTALMATVALRAPRIPFVSNVSGTWItDAQATDPAYWAAHLRQPVRFGDAVAALLAEGTWALVECGPGRQLANLARMQV 823
                    **********************************9987699***********************************999888776655554 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.3   0.3   7.8e-48   1.3e-44       1     180 []    1148    1344 ..    1148    1344 .. 0.95

  Alignments for each domain:
  == domain 1  score: 152.3 bits;  conditional E-value: 7.8e-48
                  SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS...................--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS CS
          KR    1 gtylitGGlGgLGlelarwlaekgarhlvllsRsa.................aadedskaliaelealgaevevvaaDvsdkdavealleeikaeep 80  
                  g y+itGGlGg+G +la+  a++ +++lvll+Rs+                     ++ a i+++ea ga+v v+aaDv+d+++++++ ++++ae++
  KIR62223.1 1148 GRYVITGGLGGIGITLAEDFAARVKAKLVLLARSGlpprerwddhlavhgadDRAGRAIAAIRRMEAAGASVLVLAADVTDPADLRRVRAAAEAEFG 1244
                  78*********************************999999999999887653344445699*********************************** PP

                  ---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE-- CS
          KR   81 pikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwgl 177 
                   i G++haAg+   ++ e ++ ++ ++vlapK++G+  L +++ d +ldf+vl+SSi +++g +gq++Y aaN+flDa a+  +  ++p+vs nwg 
  KIR62223.1 1245 GIDGIVHAAGLPGGGMAEVKDRAEADRVLAPKLAGTLALAQVFGDLPLDFVVLCSSITAVIGGFGQVDYCAANNFLDAHARAGAGWAAPVVSQNWGG 1341
                  ************************************************************************************************* PP

                  BTT CS
          KR  178 wae 180 
                  wae
  KIR62223.1 1342 WAE 1344
                  *86 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.8   6.8   5.8e-47   9.4e-44       1     295 [.    1371    1645 ..    1371    1648 .. 0.92

  Alignments for each domain:
  == domain 1  score: 149.8 bits;  conditional E-value: 5.8e-47
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---....-EEEEEEEE----.B--SS-EEEEEEEEE-TT CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltges...kavelrdvsilkalvlpedepvevqlslepeed 94  
                  hp+l +rv+++  + +v    +++a ++ L++Hr++g +v+Pg+++le +++A+  ++      +avelrdv++l+++ +p+++  + +++l+p+ed
  KIR62223.1 1371 HPVLTTRVTGP--EGTVLHGLVSAATHWLLDEHRIGGVPVVPGTAHLESVRAAVVAAVAAPgpdAAVELRDVVFLEPFSVPDGTIAQYRVALTPAED 1465
                  99999999997..99999***********************************999994444458******************************** PP

                  S-E....EEEEEEE-SS-TT.EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE-- CS
       PS-DH   95 gadrawvefeifSregggeewtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealaelrl 191 
                  ga+    ef + S ++g    ++h++G +  ++++a+aa+d++a+       a +r+v++++ + r +   l++Gp+++ l+a +  dge la +++
  KIR62223.1 1466 GAT----EFVVQSLAAGV--LRTHVRGAAGWTTEPAPAAADVAAV------AARSRRVDDDASFGRGRTSMLTFGPRWRSLTAHHLADGEELALVTA 1550
                  ***....**********9..69********998888777787777......34445699999999999999************************** PP

                  -GGGSSTTTT-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE.----SS-EEEEEEEE-SS-BEEEEEESEE CS
       PS-DH  192 peelaggesayvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyrpssaageelwvharl.eeegarsivadltlvdedGrvvaeieglr 287 
                  p+e+a++ +a+ lhPallD+a           + +   +ylP++++r++v++   +  +++ +h r  ++ +++ ++adltl+d dGr +++i+++ 
  KIR62223.1 1551 PAEAAADLGAWGLHPALLDVATAFG-------RGQGSGTYLPLSYGRIVVRG---PLPGRFHSHLRHrDGGTDEVVSADLTLTDPDGRELVSISDFV 1637
                  *********************9976.......5899***************8...7788999999997777778999******************** PP

                  EEE--XXX CS
       PS-DH  288 lrrverea 295 
                  lrrv++ a
  KIR62223.1 1638 LRRVDASA 1645
                  ****9876 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5   0.3   4.3e-42   7.1e-39       2     117 ..     274     391 ..     273     392 .. 0.98

  Alignments for each domain:
  == domain 1  score: 132.5 bits;  conditional E-value: 4.3e-42
                      EEEEEEEEEE--.STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-GGG CS
  Ketoacyl-synt_C   2 avikgsavnsdg.ahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHleaA 93 
                      av+ g a+n+dg  + ++tap+ ++q +a+++a+ +ag+dp++++yveahgtgt++gDpiE++al++v+ ++++ +  + +gSvKsniGHl   
       KIR62223.1 274 AVVLGNAINNDGaGKVGFTAPSVDGQMEAVAQAVGMAGIDPRTISYVEAHGTGTAMGDPIEVAALSAVYTKDTDdRGWCGIGSVKSNIGHLSQP 367
                      89**********99***********************************************************99889**************** PP

                      HHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  94 aGvaelikvvlalkhgvipptlnl 117
                      +G++++ik+vla++hg ippt+n+
       KIR62223.1 368 SGIVSVIKTVLAMEHGLIPPTINY 391
                      ***********************8 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   4.1e-21   6.7e-18       1     104 [.     394     501 ..     394     509 .. 0.84

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 4.1e-21
  KAsynt_C_assoc   1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeeskeeslprLlvlsgrteeaveallekleehlldaell 91 
                     Pnp i+ ++++ + V ++ t+w+ +     +gv+sfG+GG+n+Hv+L++++ ++r++++   +  +Ll +s++t+ a++a +++l+ehl+ +++ 
      KIR62223.1 394 PNPAIE-FADTPFYVANTLTKWDTDGaprrAGVSSFGIGGTNAHVVLEEAPPAHRADRRV--RPAQLLHVSAKTATALDAAVDRLAEHLAGNPDG 485
                     9*****.***************98877999************************999999..899***********************6554432 PP

  KAsynt_C_assoc  92 s...llneilseeisr 104
                         l++ +++ ++ r
      KIR62223.1 486 GaahLADVAHTLRVGR 501
                     2122566666665555 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   4.7e-18   7.6e-15       2      67 .]    1742    1805 ..    1741    1805 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 4.7e-18
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  ++ +++++ lgvp+  +++d+d+f lG++Sl+av+l+a+++++ gv++p++ lfe pt+a laa++
  KIR62223.1 1742 TIAQVWRDGLGVPV--VGVDDDFFALGGNSLVAVQLIASMRKATGVRLPMRSLFETPTVAGLAARI 1805
                  68899********7..459********************************************986 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.3    0.0099        16       4      34 ..    1151    1182 ..    1149    1199 .. 0.81
   2 !   34.6   0.0   7.7e-12   1.2e-08      30     158 ..    1198    1322 ..    1186    1333 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0099
                  EEESTTSHHHHHHHHHHHHT.T-EEEEEESCH CS
   adh_short    4 lvtGassGIGraiakelake.Gakvvvvdrse 34  
                  ++tG+ +GIG  +a+ +a++  ak+v+++rs 
  KIR62223.1 1151 VITGGLGGIGITLAEDFAARvKAKLVLLARSG 1182
                  89**************9876256666687775 PP

  == domain 2  score: 34.6 bits;  conditional E-value: 7.7e-12
                  EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHC CS
   adh_short   30 vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeewervievNltgvflltravlpamlkq 126 
                  +d ++ ++ +++  ++++ga++l++++Dvtd ++++++ ++a++++g++d +v+ AG+ g g+++  + +e +rv++  l g++ l++ + +     
  KIR62223.1 1198 ADDRAGRAIAAIRRMEAAGASVLVLAADVTDPADLRRVRAAAEAEFGGIDGIVHAAGLPGGGMAEVKDRAEADRVLAPKLAGTLALAQVFGDL---- 1290
                  455666677788888888****************************************7666666666666****************999888.... PP

                  TTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHH CS
   adh_short  127 ssGrIvnvsSvagkvpvagvaaYsAsKaavag 158 
                      +v  sS+++  + +g++ Y+A+  ++++
  KIR62223.1 1291 PLDFVVLCSSITAVIGGFGQVDYCAANNFLDA 1322
                  4468999******************9777665 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.1   1.8e-12   2.9e-09      26     156 ..    1198    1328 ..    1190    1334 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.8e-12
                    SSGGHHHHHHHHHH..HTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHH CS
  adh_short_C2   26 lneeakkrveelae..elgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalpl 116 
                    ++++a ++++++ +  + ga+v  l++DVtd+++++++ ++++++fg++D++v++ag      g ++  +r+e dr+l+ +l ++++la+ +  l
    KIR62223.1 1198 ADDRAGRAIAAIRRmeAAGASVlvLAADVTDPADLRRVRAAAEAEFGGIDGIVHAAGLPGG--GMAEVKDRAEADRVLAPKLAGTLALAQVFGDL 1290
                    555554444443331023444345*********************************9998..6666669*********************9998 PP

                    CTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHH CS
  adh_short_C2  117 mkeggsivnlssvgaervvpnynaygaaKaalealtrylA 156 
                      +   +v +ss+ a ++  ++  y+aa   l a +r+ A
    KIR62223.1 1291 PLD--FVVLCSSITAVIGGFGQVDYCAANNFLDAHARAGA 1328
                    664..68999999999999999999999888888887755 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   4.9e-07   0.00081      62     112 ..     168     216 ..     136     219 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4.9e-07
                 HHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEE CS
  Thiolase_N  62 iarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGv 112
                 +a +++ ++++    p+ tv  +cs +l a +la+++++ ge+d+++agGv
  KIR62223.1 168 VATNVSYRLDL--RGPSLTVHTACSTSLVAFHLACEALRNGECDMALAGGV 216
                 45555555555..7899*********************************8 PP

>> NikR_C  NikR C terminal nickel binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0014       2.2      46      74 ..     699     727 ..     698     730 .. 0.90
   2 ?   -0.8   0.0       1.1   1.8e+03      27      53 ..    1387    1413 ..    1369    1415 .. 0.87
   3 ?   -3.4   0.0       6.8   1.1e+04      38      60 ..    1787    1809 ..    1781    1814 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0014
                 EEEEEE-HHHHHHHHHHHHTSTTEEEEEE CS
      NikR_C  46 vivlkGeaeeikelaeklralkgVkhvkl 74 
                 + v+ Gea+ + ++ae l+a++ Vk+  l
  KIR62223.1 699 TCVVAGEADAVAAFAETLKATRKVKSKAL 727
                 5799*********************9776 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.1
                  SSEEEEEEEEEESSSEEEEEEEEEE-H CS
      NikR_C   27 hdliisslhvhldhdncLevivlkGea 53  
                  h l+ +++h  ld++++  v v+ G+a
  KIR62223.1 1387 HGLVSAATHWLLDEHRIGGVPVVPGTA 1413
                  7899***********988887777765 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 6.8
                  ESSSEEEEEEEEEE-HHHHHHHH CS
      NikR_C   38 ldhdncLevivlkGeaeeikela 60  
                  l  +  +e+  + G a++i+el 
  KIR62223.1 1787 LPMRSLFETPTVAGLAARIEELR 1809
                  5566778999999******9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1835 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.50
# Mc/sec: 10964.26
//
Query:       KIR62224.1  [L=293]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-13   49.8   3.7    3.2e-13   49.8   3.7    2.6  2  HTH_31    Helix-turn-helix domain
     0.0025   17.6   1.4     0.0038   17.0   0.6    1.7  2  MdcG      Phosphoribosyl-dephospho-CoA transferase MdcG


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   3.7   3.5e-17   3.2e-13       2      64 .]      19      81 ..      18      81 .. 0.94
   2 ?   -0.7   0.3      0.21   1.9e+03      37      57 ..     189     207 ..     146     212 .. 0.69

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 3.5e-17
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgl.dpaerael 64
                LGa+Lr+lRe++G+++e ++  ++ ses++sr+E Gr g  ++++++ l+ ++g+ d  er++l
  KIR62224.1 19 LGAQLRRLREASGVTREGAGWEIRASESKISRMELGRVG-FKERDVADLLSLYGVtDTTEREAL 81
                9*************************************9.**************9456698876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.21
      HTH_31  37 Grrgrpspavlealaralgld 57 
                 G +  + +++l+al +a +++
  KIR62224.1 189 GPQ--VMRDQLTALIEATRAP 207
                 333..3467788888887776 PP

>> MdcG  Phosphoribosyl-dephospho-CoA transferase MdcG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.6   4.2e-07    0.0038      39     110 ..     132     212 ..      77     228 .. 0.80
   2 ?   -1.6   0.0      0.22     2e+03     117     135 ..     244     262 ..     242     270 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.2e-07
        MdcG  39 kaedagaevplGlrlpp.aarkqRlalavapsaiarvveplaLaaala.a.......aplaaraalaalaallaalglawg 110
                 ++e a a v lG+r++  ++  +R++l++++++  r+ +p++L+a+++ a        p+ +r++l+al ++ +a +++++
  KIR62224.1 132 TPEYARAVVLLGHRGAGaDEIDRRVGLRMQRQELLRRPRPPQLWAVVDeAalrrpigGPQVMRDQLTALIEATRAPHVRLQ 212
                 4555666699*****9977889**********************6666335556677899999999999999987666554 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.22
        MdcG 117 wqlatglpylhesSDLDLl 135
                  + +t   yl ++ DLD  
  KIR62224.1 244 IEQLTSAIYLDKREDLDYY 262
                 5789999*********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1994.83
//
Query:       KIR62225.1  [L=509]
Description: serine/threonine protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-38  133.3   0.0    1.6e-38  132.6   0.0    1.2  1  Pkinase         Protein kinase domain
      3e-23   82.4   0.0    4.3e-23   81.9   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    9.5e-06   25.7   3.1      0.011   15.7   0.0    3.8  3  APH             Phosphotransferase enzyme family
     0.0005   19.5   0.0    0.00086   18.7   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.043   14.1   1.2        0.5   10.7   0.1    2.5  2  Transposase_20  Transposase IS116/IS110/IS902 family
       0.21   10.0   0.7       0.31    9.5   0.7    1.1  1  Aldedh          Aldehyde dehydrogenase family
       0.24   10.2   0.0       0.36    9.5   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
        1.4    8.8   7.4        1.7    8.6   0.3    4.0  4  MarR_2          MarR family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.0   6.9e-42   1.6e-38       1     259 [.      14     278 ..      14     280 .. 0.91

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 6.9e-42
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHHHHS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfee.....kdelylvleyveggeladllerkg 93 
                 y+  e++G G++++V +a ++  ++ vAvK ++ + a + +   +++rE +  ++l hp++ ++y++ e      +   ylv+e+veg +lad+l   g
  KIR62225.1  14 YVLRERIGLGGMSEVWRADDEVLHRPVAVKALAAQLAADPHLrATLQREARAAARLTHPHVTQVYDYGEAvlgggTVVPYLVMELVEGRSLADRLA-AG 111
                 567799***************************998887666699************************9***9888899***************7.69 PP

                 S--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS............BCTTTSCGGGS-HHHHTTSCBSHHHHH CS
     Pkinase  94 slseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk............ltsfvgtseYlAPEvlkeneyskkvDv 180
                  l+  +a ++a q++++l+  H+ g++HrD+Kp+Ni++  +   K+ DFG+a+ +  +++             + ++gt+ Y APE  +  +  +++Dv
  KIR62225.1 112 PLPWPDAVRLAGQVAAALAAAHRIGVVHRDIKPANIMLT-ESGAKVLDFGIAAPAGPHQPrtgphqprvgpgDEPMMGTPAYFAPERFDPGPPNPASDV 209
                 9**************************************.7779************99999**********9999************************ PP

                 HHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase 181 WslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeell 259
                 ++lG +ly  l+g+ p++ ++ ++ +e+++++           +    +   +++++  l   +l+ dp +R+ta++l 
  KIR62225.1 210 YALGALLYRALAGRAPLPVQTWEDAIEAHAQR----------RQAPPLRVPGLPPDVAALTLACLSADPARRPTAAHLA 278
                 ******************55444433333333..........34455567778**********************9875 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   1.9e-26   4.3e-23       3     259 .]      16     281 ..      14     281 .. 0.82

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 1.9e-26
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEE...SSSS..EEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelleeakimkklkhpnivkllgvct...keep..llivteyvkgGdLlkfLr 93 
                  l +++G G  ++V+++  +      +  VavK l ++  ++   ++ l +ea+   +l hp++ +++        +++   ++v+e+v+g +L + L 
   KIR62225.1  16 LRERIGLGGMSEVWRADDE----VLHRPVAVKALAAQLAADPhlRATLQREARAAARLTHPHVTQVYDYGEavlGGGTvvPYLVMELVEGRSLADRLA 109
                  5788999999999999877....8899*******7654443323889999**************998654433444444589***************9 PP

                  HTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET.TTSSEE........EETTSSTSGGGGS-HHHHHHSEE CS
  Pkinase_Tyr  94 kkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi.ekddey........vkkeeaklpvkWmapEslkekkf 182
                  +    +l   d +++a qvA++++  ++  +vHrd+   N++l+ ++ +k+ DfG+a     ++ ++          +e       + apE ++ +  
   KIR62225.1 110 AG---PLPWPDAVRLAGQVAAALAAAHRIGVVHRDIKPANIMLT-ESGAKVLDFGIAAPAgPHQPRTgphqprvgPGDEPMMGTPAYFAPERFDPGPP 203
                  97...***************************************.5678********9884344444343322111223333456899********** PP

                  EHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-..BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
  Pkinase_Tyr 183 tsksDvWsfGvllwEiftlgespypglkneevleklkegkrle..kpekcpeelyelmkkcweedpeeRptfselvekl 259
                  + +sDv++ G ll+  +  g+ p+p  + e+++e+  ++++ +  +    p++++ l   c+++dp++Rpt ++l ++l
   KIR62225.1 204 NPASDVYALGALLYRALA-GRAPLPVQTWEDAIEAHAQRRQAPplRVPGLPPDVAALTLACLSADPARRPTAAHLARRL 281
                  ***************999.******9999999998866665441255679**********************9998765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   3.7   5.3e-06     0.012      22     108 ..      44     135 ..      11     137 .. 0.76
   2 !   15.7   0.0   4.8e-06     0.011     167     200 ..     136     166 ..     134     169 .. 0.81
   3 ?  -16.8  20.5         8   1.8e+04     116     136 ..     348     460 ..     193     499 .. 0.42

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.3e-06
                 -EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE..EEEEEE----EE-SS.....HHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  22 ryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigl..lfalieyvpgrsllr.....klsaaqlpellealgeflaalhqv 108
                  ++ ++++++++ ++++re++  + L     +v +v+++++   + g+  +++++e v+grsl++     +l  +++ +l+++++++laa h++
  KIR62225.1  44 ALAAQLAADPHLRATLQREARAAARLTHP--HVTQVYDYGEAVLGGGTvvPYLVMELVEGRSLADrlaagPLPWPDAVRLAGQVAAALAAAHRI 135
                 34445556666777777777777666544..689*****98888888899*****************888888888999999999999998886 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 4.8e-06
                 EEE-SS-SGGGEEEC..TTEEEEE---TT-EEEE CS
         APH 167 vllHgDlhpgNllvdpddgrvtGviDfedaglgp 200
                 +++H+D++p N+++++  g    v+Df+ a ++ 
  KIR62225.1 136 GVVHRDIKPANIMLTES-GAK--VLDFGIAAPAG 166
                 689************55.555..9***9987765 PP

  == domain 3  score: -16.8 bits;  conditional E-value: 8
                 -............................................................................................SHHCHT CS
         APH 116 a............................................................................................dflaqd 122
                 a                                                                                            d+ +++
  KIR62225.1 348 AprgpgqgnrllgvlvaaglallvgvvallaldddapappagapatvtpadgrkaepppsaaappttarsrpvtlrqlaaeftalvdeaqargDIDRKT 446
                 033333333333333333333333333333333333333334444444444333333333333333333333333333333333333333333444445 PP

                 CCHHHHHHCHHHCC CS
         APH 123 lellrqlesatarl 136
                 +++lr ++++ +r+
  KIR62225.1 447 ADELREEVAELNRG 460
                 55555555555433 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.8e-07   0.00086      30     166 ..      31     159 ..      16     166 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.8e-07
         Kdo  30 aalrkyyrggllgklskdlyrfklgrtravrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwae.laeelkrallkav 127
                 a++  ++r   ++ l+  l   +  r++  rE r+  rL +  v   +  + +av  g+     l++e +eg ++L+d la +   ++++++  l  +v
  KIR62225.1  31 ADDEVLHRPVAVKALAAQLAADPHLRATLQREARAAARLTHPHVTQVYD-YGEAVLGGGTVVPYLVMELVEG-RSLADRLAAGPLpWPDAVR--LAGQV 125
                 5555566666666666663333466777778888888887777655554.3344444555778899999998.7999999986667888876..668** PP

         Kdo 128 grliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 +++ a  hr+gv H+d+ + ni+l + +     + ++D+
  KIR62225.1 126 AAALAAAHRIGVVHRDIKPANIMLTESG-----AKVLDF 159
                 ************************9998.....555555 PP

>> Transposase_20  Transposase IS116/IS110/IS902 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2      0.17   3.8e+02      60      86 ..      51      78 ..      46      79 .. 0.85
   2 ?   10.7   0.1   0.00022       0.5       7      48 ..     249     291 ..     247     301 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.17
  Transposase_20 60 GnrrlRraLyeaAlaairan.pelrayy 86
                     +++lR++L + A+aa+r + p++ ++y
      KIR62225.1 51 ADPHLRATLQREARAAARLThPHVTQVY 78
                    689**********999987769888877 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00022
  Transposase_20   7 ipGiGpvtaaallaei.gdlrrfksakqlaayaGlapvenqSG 48 
                     +pG  p +aa  la +  d+ r ++a++la+ +G +p  ++ +
      KIR62225.1 249 VPGLPPDVAALTLACLsADPARRPTAAHLARRLGATPAAESPA 291
                     79999999999999999********************988755 PP

>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.7   0.00014      0.31      50     108 ..     436     494 ..     427     505 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHS CS
      Aldedh  50 aeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelaekle 108
                 a+ R++i rk+ad l+e+  el +   ++  k l+e r++++eai+  r  ae a +l+
  KIR62225.1 436 AQARGDIDRKTADELREEVAELNRGKLKDRAKHLRELREDIAEAIERDRIGAETAARLR 494
                 6889******************************************9999999998876 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00016      0.36     325     344 ..     134     153 ..     123     191 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00016
  Pkinase_fungal 325 kagiLHrDiSenNilitdsk 344
                      +g++HrDi   Ni++t+s 
      KIR62225.1 134 RIGVVHRDIKPANIMLTESG 153
                     789**************873 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.44   9.8e+02      14      36 ..      35      54 ..      29      76 .. 0.83
   2 ?    8.6   0.3   0.00074       1.7       8      37 ..     258     287 ..     250     289 .. 0.79
   3 ?    0.2   0.0      0.31   6.9e+02      39      51 ..     356     368 ..     345     400 .. 0.82
   4 ?   -0.3   0.1      0.46     1e+03      39      56 ..     430     447 ..     413     451 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.44
                HHCTTTSEEEHHHHHHHHTSSHH CS
      MarR_2 14 Lgrrpgrdltvgelarrlglsks 36
                + +rp   ++v++la+ l  +++
  KIR62225.1 35 VLHRP---VAVKALAAQLAADPH 54
                56677...899999999877765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00074
                 HHHHHHHHCTTTSEEEHHHHHHHHTSSHHH CS
      MarR_2   8 arvLaaLgrrpgrdltvgelarrlglsksa 37 
                 a  La L + p r+ t++ larrlg +++a
  KIR62225.1 258 ALTLACLSADPARRPTAAHLARRLGATPAA 287
                 445666888888899**********99986 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.31
                 HHHHHHHHHTTSE CS
      MarR_2  39 srilkrLvaaGLv 51 
                 +r+l  LvaaGL 
  KIR62225.1 356 NRLLGVLVAAGLA 368
                 699999*****97 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.46
                 HHHHHHHHHTTSEEEEES CS
      MarR_2  39 srilkrLvaaGLverrpg 56 
                 + ++++++a+G + r+++
  KIR62225.1 430 TALVDEAQARGDIDRKTA 447
                 778888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.51
# Mc/sec: 3029.50
//
Query:       KIR62226.1  [L=277]
Description: hypothetical protein TK50_28700 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00073   19.4   0.0     0.0012   18.7   0.0    1.4  1  DUF2154   Cell wall-active antibiotics response 4TMS YvqF


Domain annotation for each model (and alignments):
>> DUF2154  Cell wall-active antibiotics response 4TMS YvqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.7e-08    0.0012      22     114 .]     184     274 ..     162     274 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6.7e-08
     DUF2154  22 iiGdttiDLtkavlpegetvivirkliGdvkilVPedvevsveasvifGdvkvldekeagllneslkleseeyeeaekkvkiivslliGdveV 114
                   G t++DL+   + +   ++ ++++i+++ + VP  +  +v++ + +G v+v d++++g +     ++s++ ++   +v + + +++ +v+V
  KIR62226.1 184 AAGATRVDLRLPRVVG-TLTVRLTGGINQLVVRVPGALPTRVRSGAGAGAVTVYDRHRQG-VAAGAVISSPDWDRRADRVYVDMVAGANTVTV 274
                 5688999999988876.6678999************************************.55557799***999999998888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1956.30
//
Query:       KIR62227.1  [L=388]
Description: hypothetical protein TK50_28765 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-31  107.9   0.0    7.9e-31  107.6   0.0    1.1  1  Esterase       Putative esterase
    1.1e-08   35.8   2.3    7.8e-07   29.8   2.3    2.6  1  DUF3327        Domain of unknown function (DUF3327)
    2.9e-06   26.9   0.3    7.4e-05   22.3   0.0    2.1  2  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.024   13.9   0.0      0.035   13.4   0.0    1.2  1  Hydrolase_4    Serine aminopeptidase, S33
      0.059   13.6   0.9       0.14   12.4   0.9    1.6  1  TetR_C_16      Tetracyclin repressor-like, C-terminal domain
       0.12   12.2   0.2       0.25   11.2   0.2    1.4  1  Abhydrolase_3  alpha/beta hydrolase fold
       0.17   12.0   2.5       0.32   11.2   2.1    1.6  1  Patatin        Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6   0.0   3.1e-34   7.9e-31       3     249 ..     160     382 ..     158     384 .. 0.90

  Alignments for each domain:
  == domain 1  score: 107.6 bits;  conditional E-value: 3.1e-34
                 TTTEEEEEEEEE.CC.GGTTTEEEEEEE--TTHHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSBB.TTEEETTCCCCCCHCHHHHTH CS
    Esterase   3 algreikvqvyLPedyspgrkypvvylldGltgwdqnfrakelleslaregeiaeviivvvprggessfysdwdlgarfyenategpgaeayetfltqe 101
                 a g +++v+vy P   ++++++p+++++dG       +r+ ++l++l++ g+i++  + +v++   +             ++ +e   + a++ f+t e
  KIR62227.1 160 AWGGRRRVAVYRPAV-PAAGPLPLLVVFDG-YLSRALLRVPATLDNLIAAGRIPPTLALFVSAPSGA-------------RRMAELRPSAALRAFVTRE 243
                 67899**********.**************.99999*******************888777666555.............45889999*********** PP

                 HHHHHHHHCSEECCC..EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CCHCHHHCTTCCHHHCC-CCCCHCHHCHTTSEEEEEEEECTTBCCCH CS
    Esterase 102 Llplldanfrtapdg..ravaGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWgqeekeawqendpvllakelsaslkalriyldvGtseddlg 198
                 Llp+ + +  +++d   r++aG+S+GGl+A ++al +p+ Fg v+++S       ++W++++ +    ++++l +  +  +   +r yldvG++e+   
  KIR62227.1 244 LLPWARRRWAVTDDParRVIAGSSLGGLAAAYVALAAPGAFGAVIAQS------GSFWWPASPQP--DEREWLTRAYAGWPAAPVRFYLDVGDRENTWP 334
                 **************99********************************......88****55554..9999**99999*****************9555 PP

                 TSCHHHHHHHHHHHCCHHHHCCCCCCTT-SCCCC--SSHHHHHHHHHHCHH CS
    Esterase 199 eqlsveilevlarnrelkeqlaargvegedheydGghsweyWraqLiaala 249
                    ++   + l+ nr++++ l+arg++  + ey Ggh++  Wr +++++l+
  KIR62227.1 335 ---RPGQVDQLSVNRRFRDLLVARGHQVAYAEYRGGHDYVNWRRTFAEGLL 382
                 ...34444557799********************************99875 PP

>> DUF3327  Domain of unknown function (DUF3327)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   2.3   3.1e-10   7.8e-07       2     121 ..      37     139 ..      36     140 .. 0.64

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 3.1e-10
     DUF3327   2 VtFlWRdpagaesavrrVlldingvtdhhsaepqslerlpgtDvWalslrlradwrgsYrl...iPqraeadedlaraaareawrallataqaDplnpe 97 
                 VtFlWR++a+  ++++   +      d       +l+r+pgtD+W+ s rl+ d r  Y l    P +   d++ +  ++ + +     +  aDp +p+
  KIR62227.1  37 VTFLWRGEAA--QTTTGWGI------D------LTLRRVPGTDLWHGSQRLPVDLRTIYFLrhgSP-ELPTDPTGRGPTHLDVLNHHPFRLPADPADPN 120
                 8888888755..22222222......2......369*************************77755.22223333333333333333333455555555 PP

     DUF3327  98 sllrsrrgaaaSvlelpdApaqpa 121
                 +     r   aS lelp+Ap++p+
  KIR62227.1 121 D-----RELWASLLELPKAPDEPW 139
                 4.....45689**********997 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.9e-08   7.4e-05      62     121 ..     257     318 ..     251     324 .. 0.90
   2 ?    2.5   0.0     0.033        86       9      28 ..     351     370 ..     344     379 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.9e-08
                   -GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTS..THHHCCCC--T CS
  Peptidase_S9  62 dserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdl..lteeymewgnp 121
                   d+ r +i G S GG+ ++ ++  +p  F+a++a+ + + + ++ + ++   lt+ y +w+++
    KIR62227.1 257 DPARRVIAGSSLGGLAAAYVALAAPGAFGAVIAQSGSFWWPASPQPDERewLTRAYAGWPAA 318
                   78899***********************************9998887778778899999875 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.033
                   HHHCCT-EEEEE--TTSSTT CS
  Peptidase_S9   9 lladrGyvvvvanirGsggy 28 
                   ll +rG  v++a++rG+++y
    KIR62227.1 351 LLVARGHQVAYAEYRGGHDY 370
                   5679*************988 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.4e-05     0.035      77     157 ..     260     351 ..     248     372 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
  Hydrolase_4  77 plfllGhSmGGliallyllrypdkvaglilsaPalkikaklkappllklllkllgkllpklqv.............snnlkadslsrdpevvaa 157
                  ++++ G S+GGl a+ ++l  p  + ++i  +  ++++a+  ++p  + +l+ +   +p  +v             +++ + d+ls +++++++
   KIR62227.1 260 RRVIAGSSLGGLAAAYVALAAPGAFGAVIAQSGSFWWPAS--PQPDEREWLTRAYAGWPAAPVrfyldvgdrentwPRPGQVDQLSVNRRFRDL 351
                  6899*******************99999999999998866..6666666666666666666666666777777777666666666666666665 PP

>> TetR_C_16  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.9   5.4e-05      0.14      37      82 ..     233     278 ..     206     283 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.4e-05
                 -HHHHHHHHHHHHHHCTTTS-STTHHHHHHHHHHHHHHHHHHHHTS CS
   TetR_C_16  37 aellrefleeqvlaplaarlggpdaelRaalvasqllGlalaRyvl 82 
                  ++lr f+++++l++ ++r   +d   R  +++s l Gla a   l
  KIR62227.1 233 SAALRAFVTRELLPWARRRWAVTDDPARRVIAGSSLGGLAAAYVAL 278
                 5789*******************9999999**********997665 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   9.7e-05      0.25      56      95 ..     245     283 ..     232     336 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.7e-05
                    HHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHT CS
  Abhydrolase_3  56 lrwlaeqawelgadpsrivlaGdSaGGnlaaavalrarde 95 
                    l w++ + w+   dp+r v+aG S GG  aa+val+a  +
     KIR62227.1 245 LPWARRR-WAVTDDPARRVIAGSSLGGLAAAYVALAAPGA 283
                    4555555.99999*********************998765 PP

>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.1   0.00012      0.32      27      53 ..     259     285 ..     235     328 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
     Patatin  27 rfdiisGtSaGAiialllalgrdpaal 53 
                   ++i+G+S G+++a+++al+ + a  
  KIR62227.1 259 ARRVIAGSSLGGLAAAYVALAAPGAFG 285
                 569*****************9766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2722.25
//
Query:       KIR62228.1  [L=109]
Description: anti-sigma-factor antagonist [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-13   50.4   1.0    2.7e-13   50.0   1.0    1.1  1  STAS_2    STAS domain
    5.2e-08   32.5   0.0    6.7e-08   32.2   0.0    1.1  1  STAS      STAS domain


Domain annotation for each model (and alignments):
>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   1.0   3.1e-17   2.7e-13       1      79 [.      11      87 ..      11      88 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 3.1e-17
      STAS_2  1 LsLsGeldldtaaelreqllealaag.aevvvDlsgvervDsaalalLlalartarargrrlvlrglppalrrlldlyGl 79
                L+L+Geld+dta+el e+++++ ++g +e+++Dl+g++ +Ds++l++L+  +r      ++++l+g ++ l++lld++Gl
  KIR62228.1 11 LRLAGELDYDTAPELVEAADRLRRDGcTELEIDLGGITLCDSSGLSALVVIHRNG---TGPIRLTGTGGMLQQLLDRTGL 87
                89********************9*****************************965...9********************9 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   7.4e-12   6.7e-08      13     105 ..      11      91 ..       4      98 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 7.4e-12
                 EEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHHHTTCGGCC CS
        STAS  13 lrldgpidfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevreklektgffdev 105
                 lrl g++d+ +a+++ e  +r  +++         ++ l +dl++++  DssG++aL+ i+++     + + l ++ + + + l++tg+++++
  KIR62228.1  11 LRLAGELDYDTAPELVEAADRLRRDG---------CTELEIDLGGITLCDSSGLSALVVIHRNGT---GPIRLTGTGGMLQQLLDRTGLAEVL 91 
                 89***********************9.........8**************************999...**********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 839.50
//
Query:       KIR62229.1  [L=232]
Description: hypothetical protein TK50_28840 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1785.34
//
Query:       KIR62230.1  [L=251]
Description: hypothetical protein TK50_28900 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-27   95.4  19.9    3.2e-27   95.4  19.9    1.7  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       0.1   1.9e+03      52      67 ..       9      24 ..       2      36 .. 0.58
   2 !   95.4  19.9   1.8e-31   3.2e-27       2     179 ..      75     243 ..      74     246 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.1
  BPD_transp_1 52 lilpviillllsaapy 67
                   +  +++lll++a+ +
    KIR62230.1  9 IVPVAVVLLLWQAGSM 24
                  3333555555555444 PP

  == domain 2  score: 95.4 bits;  conditional E-value: 1.8e-31
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqif 98 
                   +llGi ++  r+++++ l++pli +++ +P++++++ll+       i+g++  p+++l+ + ++++++++  +++ ++++ l+  ar lGa+r qi+
    KIR62230.1  75 TLLGIAMG--RSRWIRVLVDPLIAITYPIPVVAILPLLL------VIFGTGGRPIVVLAGIISFFPAVVNAMSGVLQVDERLILMARNLGAGRQQIL 163
                   689*****..*****************************......99************************************************** PP

  BPD_transp_1  99 rkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrll 179
                   +k++lP alp+i++g++la+g++l g+++ efl+++ G+g+++++  ++y++++++ +++++++++ +ll++v+  +qr +
    KIR62230.1 164 WKIILPGALPSIFAGIRLAAGLALLGTIAGEFLAASDGIGSMTWRYWQIYQIDNMY-ATLAVIAAMGFLLTTVTLRVQRRF 243
                   ********************************************************.*****************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1866.07
//
Query:       KIR62231.1  [L=337]
Description: hypothetical protein TK50_28920 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-28   98.8   0.4    3.6e-28   98.1   0.4    1.3  1  ADH_zinc_N    Zinc-binding dehydrogenase
    4.9e-24   84.3   0.0    8.8e-24   83.5   0.0    1.4  1  ADH_N         Alcohol dehydrogenase GroES-like domain
      3e-22   80.1   0.5    5.3e-22   79.3   0.5    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.4     6e-32   3.6e-28       1     129 [.     173     300 ..     173     301 .. 0.94

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 6e-32
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC..TSSEEE. CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg..gkgeee. 96 
                 g+G+a+vqlAk  Ga+v++ ++++ k++++  lGad+v+ ++++d+ +r +++tgg g+dv++e++G g+++eaal  l+p Gr+vv Gg  g++  + 
  KIR62231.1 173 GLGHAVVQLAKLGGAHVVGLVGDPAKADFVSALGADAVLSTRDDDWPQRARAATGGAGFDVIVEHIG-GDVFEAALGTLAPTGRMVVAGGhaGEH--Pr 268
                 89***************************************544***********************.*********************963333..34 PP

                 EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  97 fdlrnlllkeksilGsllgslreefkealdlla 129
                 +d+   +++e  ++Gs   + ++e++++l+l+a
  KIR62231.1 269 LDVIETFRNEYELRGSRSQR-PDEIARVLALVA 300
                 ********************.9****9999986 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.0   1.5e-27   8.8e-24       1     107 [.      23     129 ..      23     131 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.5 bits;  conditional E-value: 1.5e-27
                 TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSEE CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvsldGgfaeyv 99 
                 p+ev+++v a+++++ D  + +g +++  +lp +lG EivG+ve+vg++v + + GdrV++ p+++cg+C++C  g+ nlC++a++ g++++Gg+a++ 
  KIR62231.1  23 PDEVRLRVLAVAVNHLDADLRSGVSRMDLRLPHVLGREIVGVVEAVGDAVVDRRPGDRVLALPNTPCGRCERCLAGRANLCPRADMPGITRWGGYARHA 121
                 689************************************************************************************************ PP

                 EECGGGEE CS
       ADH_N 100 vvpekklv 107
                 vv  + l+
  KIR62231.1 122 VVAGRGLL 129
                 *9877765 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.5   8.8e-26   5.3e-22       1     133 []     205     335 ..     205     335 .. 0.83

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 8.8e-26
                   TT-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileel 93 
                   lGAd v+  r++d+     aatgg+g+Dv+++ +gg+ + ea+l  l++ Gr+v+ gg+  + + +++   +  r+ +       +++ + d+++++
    KIR62231.1 205 LGADAVLSTRDDDWPqrarAATGGAGFDVIVEHIGGDVF-EAALGTLAPTGRMVVAGGH--AGEHPRLDVIETFRNEYELRGS--RSQ-RPDEIARV 295
                   8******8888888888889*******************.*******888****99985..4444444444545555554444..444.5566**** PP

                   HHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  94 aalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   +al+++G+l p+vd v+pl++aa Ahr+l+++r+ GK V+
    KIR62231.1 296 LALVAAGRLSPRVDAVLPLADAAHAHRALAQRRVLGKQVI 335
                   *************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2527.57
//
Query:       KIR62232.1  [L=226]
Description: AraC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-18   66.9   0.6    2.5e-18   66.1   0.6    1.4  1  HTH_18        Helix-turn-helix domain
    1.6e-06   28.0   0.0      0.083   13.0   0.0    2.3  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
    0.00037   20.6   6.7     0.0059   16.7   0.2    3.7  3  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
       0.12   11.8   0.2       0.56    9.7   0.0    2.2  3  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.6   5.5e-22   2.5e-18       2      80 ..     149     225 ..     148     226 .] 0.96

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 5.5e-22
                 HHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   2 aaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 aa++g+++r L+r++++ +g  pk+++r lR++rA + L++ +g+++ae+A+a+G++d++++sr+ r l g+ P++ +r
  KIR62232.1 149 AAEVGLTPRALHRRCQALFGYGPKTLARILRMRRALA-LAR-AGTPLAEVAAASGYADQAHLSRDVRDLAGVAPAALLR 225
                 89***********************************.766.9*******************************99876 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.2e-05     0.099      15      38 ..     149     172 ..     143     174 .. 0.93
   2 !   13.0   0.0   1.9e-05     0.083      10      41 ..     192     224 ..     187     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.2e-05
                 HHHTTSSHHHHHHHHHHHSSS-HH CS
    HTH_AraC  15 AdelgfSrsyFsrlFkketGmtPs 38 
                 A+e+g+ ++ ++r++++ +G  P+
  KIR62232.1 149 AAEVGLTPRALHRRCQALFGYGPK 172
                 99*******************997 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.9e-05
                 -HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC  10 tiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                  ++++A++ g+ ++ ++sr  +   G+ P + +
  KIR62232.1 192 PLAEVAAASGYaDQAHLSRDVRDLAGVAPAALL 224
                 689****************99998888888766 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.084   3.8e+02      12      23 ..      95     106 ..      89     107 .. 0.85
   2 !   16.7   0.2   1.3e-06    0.0059       3      37 ..     133     167 ..     133     181 .. 0.85
   3 ?    3.7   0.3     0.016        70       4      26 ..     182     205 ..     179     214 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.084
      HTH_28  12 GhsvreaArelg 23 
                 G+++reaA++lg
  KIR62232.1  95 GRAAREAAERLG 106
                 8899*****998 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.3e-06
      HTH_28   3 leiikllaaGhsvreaArelgisrrtvyrWikrye 37 
                 +++  llaaG++v+ aA+e+g+++r + r ++++ 
  KIR62232.1 133 ARVAGLLAAGRPVAGAAAEVGLTPRALHRRCQALF 167
                 58999**********************88887765 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.016
      HTH_28   4 eiikllaaGhsvreaArelgi.sr 26 
                 +++ l+ aG + +e+A++ g  ++
  KIR62232.1 182 RALALARAGTPLAEVAAASGYaDQ 205
                 78889999*********9998555 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00012      0.56      20      48 ..     135     163 ..     133     166 .. 0.84
   2 ?   -3.6   0.0       1.7   7.7e+03      42      49 ..     172     179 ..     167     180 .. 0.63
   3 ?   -2.6   0.2      0.84   3.7e+03      20      35 ..     183     198 ..     181     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00012
  HTH_Tnp_ISL3  20 ilelllesrsvkavArqlgvSwtTVwril 48 
                   ++ ll  +r+v+ +A+++g++++ ++r+ 
    KIR62232.1 135 VAGLLAAGRPVAGAAAEVGLTPRALHRRC 163
                   666777778******************86 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.7
  HTH_Tnp_ISL3  42 tTVwrild 49 
                   +T+ ril+
    KIR62232.1 172 KTLARILR 179
                   56666654 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.84
  HTH_Tnp_ISL3  20 ilelllesrsvkavAr 35 
                   +l+l++ + + ++vA+
    KIR62232.1 183 ALALARAGTPLAEVAA 198
                   6788888899999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      153  (0.00853366); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1633.43
//
Query:       KIR62233.1  [L=126]
Description: hypothetical protein TK50_28995 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-17   62.1   3.7    7.4e-17   61.9   3.7    1.0  1  SUKH-4    SUKH-4 immunity protein


Domain annotation for each model (and alignments):
>> SUKH-4  SUKH-4 immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   3.7   4.1e-21   7.4e-17      74     173 .]      22     120 ..       5     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 4.1e-21
      SUKH-4  74 ggllvLGal.esaslvldpgtGaVlavdleeeerapVNsdlsaFveclwrlerevpldadlaeeageaeerlaarlrerLraiDPaAfadpesfWpevl 171
                    +vL+++ + + lv+dp+tGaV +vd++ +  +pVNs+l+a+v c+ ++ +++++ ++l ++a+++ e++ +rl++r+r++DPa ++++++fW+++ 
  KIR62233.1  22 STGVVLAEDeGLSRLVVDPATGAVSLVDADGA--EPVNSTLDALVACAEAYLAARAEADALPDDADDDLEAVGERLTDRFRQLDPASVGHENRFWSVAA 118
                 34468888866678999***********9988..79**********************99999999888***************************998 PP

      SUKH-4 172 ee 173
                 ee
  KIR62233.1 119 EE 120
                 76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 983.97
//
Query:       KIR62234.1  [L=108]
Description: export protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-23   81.7   2.8    5.7e-23   81.5   2.8    1.0  1  DUF3817   Domain of unknown function (DUF3817)


Domain annotation for each model (and alignments):
>> DUF3817  Domain of unknown function (DUF3817)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   2.8   3.2e-27   5.7e-23       2      83 .]       3      90 ..       2      90 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 3.2e-27
     DUF3817  2 klyrviAiiegvslllLlvamilkyl......lvkvigivHGllfvvYlllalllaskmrWslkrlvllllagvvPflsfiverklar 83
                kl+  +A++e++s+l+Llv+m +ky+      +vk++g++HG lfv+Y +l+l +a+  rW+   ++++l+++v Pf+++++er++ar
  KIR62234.1  3 KLFVAAAVAEACSWLALLVGMAVKYGppgneiGVKIFGPIHGGLFVAYGVLVLAVARLHRWRTWPTLVALACSVPPFATLVFERWAAR 90
                78999********************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 824.19
//
Query:       KIR62235.1  [L=150]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-44  150.4  15.9    3.2e-44  150.2  15.9    1.0  1  DUF4383   Domain of unknown function (DUF4383)
     0.0041   16.6   0.5     0.0041   16.6   0.5    1.7  2  DUF2162   Predicted transporter (DUF2162)
  ------ inclusion threshold ------
      0.024   14.1   0.5      0.024   14.1   0.5    2.2  2  SfLAP     Sap, sulfolipid-1-addressing protein
       0.23   11.8   4.3       0.15   12.4   1.5    2.1  2  DUF4395   Domain of unknown function (DUF4395)


Domain annotation for each model (and alignments):
>> DUF4383  Domain of unknown function (DUF4383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2  15.9   7.1e-48   3.2e-44       1     123 [.      18     141 ..      18     142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.2 bits;  conditional E-value: 7.1e-48
     DUF4383   1 rvlallvGlvfllvGvlGfiPgltseydelalageasgakllglfqvnllhnlvhllvGvlglaaarsasgarlyllllgvvylllailgllvldkt.a 98 
                 r +a++vG+vfllvG+lGf+Pg+t+++ +l++ag+ sgakllg+fqv++lhn+vhl++G++gla++r+  gar++l+++g++yl+l+++gl+v + + a
  KIR62235.1  18 RRAAATVGVVFLLVGLLGFVPGITTDFGDLRFAGHGSGAKLLGVFQVSVLHNAVHLAFGLAGLALSRTWDGARTFLIGGGAIYLVLWLYGLVVDHGSgA 116
                 789******************************************************************************************6666** PP

     DUF4383  99 nllplngadnwlhlllalvllalgl 123
                 n++p+n+adnwlhl+l+++++alg+
  KIR62235.1 117 NFIPVNNADNWLHLVLGAGMIALGV 141
                 ***********************98 PP

>> DUF2162  Predicted transporter (DUF2162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.27   1.2e+03     206     219 ..      23      36 ..      14      41 .. 0.59
   2 !   16.6   0.5   9.1e-07    0.0041      14      85 ..      76     146 ..      61     149 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.27
     DUF2162 206 lvlvlllallllGf 219
                  v v++l++ llGf
  KIR62235.1  23 TVGVVFLLVGLLGF 36 
                 34444444444444 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 9.1e-07
     DUF2162  14 giKtGlglglsnlsrkklllilllYlllflllalllssldekllesllrygmvlhllmAlllialGlytlkk 85 
                 g+ +Gl+l+ ++   +  l+  ++  l++ l +l++++ + + + ++ +   +lhl++++++ialG++t + 
  KIR62235.1  76 GL-AGLALSRTWDGARTFLIGGGAIYLVLWLYGLVVDHGSGANFIPVNNADNWLHLVLGAGMIALGVLTTRD 146
                 44.5777777777777777777777788888899999999999*************************9886 PP

>> SfLAP  Sap, sulfolipid-1-addressing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   3.5      0.11   5.1e+02      29      47 ..      23      41 ..      14      86 .. 0.46
   2 ?   14.1   0.5   5.4e-06     0.024      33      90 ..      91     147 ..      83     150 .] 0.77

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.11
       SfLAP 29 lnllaFlvgwlvvlvalgl 47
                + +++Fl+ +l++ v+++ 
  KIR62235.1 23 TVGVVFLLVGLLGFVPGIT 41
                3344444444444444444 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 5.4e-06
       SfLAP  33 aFlvgwlvvlvalglivlfvlrsllsgasaa.pssaikalqivlGvlllllaaveavrr 90 
                 +Fl+g+ + +++l l  l+v ++ +          a ++l++vlG+++++l+++ ++ r
  KIR62235.1  91 TFLIGGGAIYLVLWLYGLVVDHGSGANF--IpVNNADNWLHLVLGAGMIALGVLTTRDR 147
                 5777777777777777777777666433..2458899****************999877 PP

>> DUF4395  Domain of unknown function (DUF4395)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.5   3.3e-05      0.15      62      97 ..       7      42 ..       1      83 [. 0.78
   2 ?   -0.1   0.4      0.24   1.1e+03      52      52 ..     105     105 ..      64     149 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.3e-05
     DUF4395 62 gpkpeledaapkrFAqliGlvfllvalvlfllgapv 97
                 ++p    a+  r A+++G+vfllv+l++f+ g+++
  KIR62235.1  7 RRNPADGRAPVRRAAATVGVVFLLVGLLGFVPGITT 42
                45666677888999*****************99987 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.24
     DUF4395  52 l 52 
                 l
  KIR62235.1 105 L 105
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 1247.96
//
Query:       KIR62236.1  [L=341]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-22   80.9   0.1    2.1e-22   80.2   0.1    1.4  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
    1.3e-09   37.8   0.0    8.6e-06   25.5   0.0    2.5  2  ox_reductase_C   Putative oxidoreductase C terminal domain
    4.6e-08   33.1   0.0    7.9e-08   32.3   0.0    1.3  1  GFO_IDH_MocA_C   Oxidoreductase family, C-terminal alpha/beta
     0.0013   19.2   0.1     0.0022   18.4   0.1    1.4  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
     0.0026   17.2   0.0      0.004   16.5   0.0    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
  ------ inclusion threshold ------
      0.038   14.2   0.3       0.15   12.3   0.3    2.0  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.039   14.5   0.1      0.082   13.5   0.1    1.5  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.1   8.3e-26   2.1e-22       2     120 .]       5     121 ..       4     121 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 8.3e-26
                   EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-SS CS
  GFO_IDH_MocA   2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPlatt 98 
                   rv+++GaG ++++h+  + + +++ e+ ++ d    +a a+a++ g+  ++d++ella   +dav+v++p+  h  +++a+++ag+  ++EKP+a +
    KIR62236.1   5 RVGLVGAGGVAQRHA-RVLDGFDDVEILGVTDVARDAATALADAHGARTFADVDELLAAG-PDAVYVCVPPFAHGPVEEAVIAAGVPMFVEKPVAVD 99 
                   89************9.889999************************************55.************************************ PP

                   HHHHHHHHHHHHHHTS-EEEE- CS
  GFO_IDH_MocA  99 veeakelvelaekkgklvsvgy 120
                   ++ a+++++l++++g l +vg+
    KIR62236.1 100 LDTAERIADLVARRGLLTGVGH 121
                   ****************999986 PP

>> ox_reductase_C  Putative oxidoreductase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   3.4e-09   8.6e-06       1      68 [.     124     187 ..     124     193 .. 0.80
   2 !    9.8   0.1   0.00023      0.59     102     141 ..     205     243 ..     200     244 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 3.4e-09
  ox_reductase_C   1 rylkvvqkmkkiikennlkvvatnaryvsayehaakkawwek.sisaGpvveqathfcdlsryfgGdvd 68 
                     ryl+vv++++++++++ +++v  +       ++   +aww +   s+Gpvveqa+h+ dl r + G+v 
      KIR62236.1 124 RYLHVVRHARELLADRPVRMVGGA-----WLDKVPPVAWWARrDRSGGPVVEQAAHVLDLMRVLVGEVT 187
                     899999999999999988876542.....2455667899986267899*******************96 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00023
  ox_reductase_C 102 iprltsaswkyksGavGslehavalqGtkystelevladG 141
                     +  +t+a+ ++  GavG+++ a +l G k+ + le+ladG
      KIR62236.1 205 VDSVTTAALRFAAGAVGTVSAACVL-GWKHRAGLEILADG 243
                     66799**************988776.999**********9 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   3.1e-11   7.9e-08      27     112 ..     152     234 ..     140     235 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 3.1e-11
                     HHHHCCGGSHHCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEEEEEEEEEEETTEEEEEEEECCTSSSEEE CS
  GFO_IDH_MocA_C  27 eakkrwkrrkkksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaavmsvlnlekgsgevitlesgvskglsir 112
                      +++ w++r+ +sgG +++ + H +Dl+++L+G++ +v+a  +++   ++ a+++  +    + l +++g+v t ++++  g+++r
      KIR62236.1 152 VPPVAWWARRDRSGGPVVEQAAHVLDLMRVLVGEVTEVTAYGDGTPPPVDGADVDSVT---TAALRFAAGAVGTVSAACVLGWKHR 234
                     57788999999*****************************999766666666666666...8*********************997 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   8.7e-07    0.0022       1      93 [.       5      90 ..       5     135 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.7e-07
                    EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTSEE CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapklaeagvkv 93
                    +v++vG  G v q+ +r+L+   +ve++ ++  +r+a ++la+a++        ++ dvde   ++ d v  ++p  ++ ++++++++agv +
      KIR62236.1  5 RVGLVG-AGGVAQRHARVLDGFDDVEILGVTDVARDAATALADAHG------ARTFADVDELLAAGPDAVYVCVPPFAHGPVEEAVIAAGVPM 90
                    79****.57799********************************88......889999999999**************************954 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.6e-06     0.004      35     100 ..       2      72 ..       1      78 [. 0.81

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.6e-06
                   TTSEEEEES-SHHHHHHHHHHHHTT.-EEEEESSSHHHHH..CHHHHTC.EECSHHHHHHH.-SEEEE-S- CS
  2-Hacid_dh_C  35 sgktvGiiGlGrIGqavakrlkafg.mkviaydrskkkee..eeeelgv.elvsleellae.sDivslhlp 100
                   +g +vG++G+G ++q+ a++l +f+ ++++++    ++ +   ++++g+ ++++++ella   D v +++p
    KIR62236.1   2 RGCRVGLVGAGGVAQRHARVLDGFDdVEILGVTDVARDAAtaLADAHGArTFADVDELLAAgPDAVYVCVP 72 
                   7899********************736***99988887766766677776888****99762477777776 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   5.8e-05      0.15       1      96 [.       6      90 ..       6     108 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.8e-05
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS.SEEEE-SSGGGHHHHHHHHHHHT-E CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg.dlvvnlsppissldvlkaCietgvh 95
                     v ++GaG+v+q  a++l   +dv  ei  ++   + ++ ++a+a+g             ++ +++ll+ g d+v  ++pp+ + +v +a i++gv 
       KIR62236.1  6 VGLVGAGGVAQRHARVLDGFDDV--EILGVTDVARDAATALADAHGA---------RTFAD-VDELLAAGpDAVYVCVPPFAHGPVEEAVIAAGVP 89
                     5789******************9..5654444444444444444444.........34445.555777788***********************97 PP

                     E CS
  Sacchrp_dh_NADP 96 y 96
                     +
       KIR62236.1 90 M 90
                     6 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   3.2e-05     0.082       1      77 [.       5      79 ..       5      88 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.2e-05
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHH CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveev 77
                   ++g++GaG +++  a+  +  g+++ ei+ +++   + a++la++ g++++a   e +a+  d v ++v+p ++  v
     KIR62236.1  5 RVGLVGAGGVAQRHAR--VLDGFDDVEILGVTDVARDAATALADAHGARTFADVDELLAAGPDAVYVCVPPFAHGPV 79
                   699*************..77888899999999********************77777888***********998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2473.86
//
Query:       KIR62237.1  [L=246]
Description: antitermination regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-11   43.7   0.8    4.1e-11   42.5   0.8    1.7  1  ANTAR     ANTAR domain
    5.6e-10   39.7   4.4    8.4e-10   39.1   1.8    2.3  2  GAF_2     GAF domain
    7.4e-06   26.6   0.8    1.5e-05   25.7   0.2    1.7  2  GAF       GAF domain


Domain annotation for each model (and alignments):
>> ANTAR  ANTAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.8   6.9e-15   4.1e-11       5      54 .]     188     237 ..     176     237 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 6.9e-15
                 HHHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHCTTTS-HHHHHHHH- CS
       ANTAR   5 ealeeRklieqAkgiLmeryglsedeAfrlLrklSmdsnvklrevAeavv 54 
                 +al    +++qA+g++m+++g+ ++eA ++Lr ++ +  ++lrevAe++v
  KIR62237.1 188 AALLGEGVVGQAIGVIMTQRGCPAPEALEVLRSAATSLDIPLREVAERLV 237
                 56666678****************************************97 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   1.8   1.4e-13   8.4e-10      20     137 ..      46     170 ..      17     171 .. 0.70
   2 ?    0.7   0.0       0.1   6.1e+02     115     130 ..     207     222 ..     172     244 .. 0.58

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 1.4e-13
                 .......EEEEEEE-TTS-EEEE.....EEEES-TTSTT-S-B---TT.HHHHHHHHTS-EEES-GGG-S-HHHHH..HHHHTT--EEEEEE.-TTS-- CS
       GAF_2  20 aa.....lgyillvdddgglrla.....awgeaeeefgaaldrplgeg.lvgealrtgrpvilndleedpdkkglp..aghaglrsflavPl.isegrv 104
                 a+     ++++++    + lr       a++ +     + l  + g   ++  a++ ++ +i +dl ++ ++ g+   a++ag+r  ++ P+ ++ ++v
  KIR62237.1  46 AQaavagVAWCGF----TALRAGepagvAASDPALAGLDDL--SDGPDtPAMSAIHRREMIIAEDLGRESRWPGWTarARQAGVRGVISAPVdVD-EQV 137
                 2211222334444....333333222212222222222223..335565999*************9999999999988999999999*****666.59* PP

                 -EEEEES......--HHHHHHHHHHHHHHHHHH CS
       GAF_2 105 vGvlnlyankppafdeedlelLeelaeqiaiai 137
                 +G++nlya+ p+a++ +++  + +lae++++ +
  KIR62237.1 138 IGAINLYASTPDALTTRHQLTAMLLAEHAGLLL 170
                 ******************************987 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.1
                 ...--HHHHHHHHHHH CS
       GAF_2 115 ppafdeedlelLeela 130
                 ++   +e le+L++ a
  KIR62237.1 207 RGCPAPEALEVLRSAA 222
                 3333344444444443 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.2   2.5e-09   1.5e-05       4     130 ..      20     167 ..      17     170 .. 0.66
   2 ?   -1.3   0.0      0.54   3.2e+03     100     127 ..     198     223 ..     181     241 .. 0.64

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 2.5e-09
                 HHHHHHHHHHHHHHTESEEEEEE..........EEETTEEE................CEEEEECC...EEEETTSHHHH....HHHHHSSSEEESTGGT CS
         GAF   4 elldtvveelrellgadrvalyl..........pdydGlhy................dipqasrw...lfmkngrgicg....qvlatgqplvipdstp 69 
                  ll+++++ l e+++ d +++ l                 +                  ++a++    l + +     +     +++ ++ ++ +d+ +
  KIR62237.1  20 ALLRELTAGLIEVTDFDAALVQLvglaqaavagV------AwcgftalragepagvaASDPALAGlddLSDGP-----DtpamSAIHRREMIIAEDLGR 107
                 5899999999999999999994434444444332......023333344433333332333333333333333.....13344899999999999999* PP

                 STTHHTTHHHHHHHHTTESEEEEEEEEETTEEEEEEEEEESSS.CSHHHHHHHHHHHHHHHH CS
         GAF  70 dprfaqynrrdllenmgirsslvvPlvndgelwGllvlhnpsp.pftreelellqvladqva 130
                 ++r+    +   +++ g+r ++++P+ +d++++G++ l+  +p   t+     ++ la++++
  KIR62237.1 108 ESRWPG--WTARARQAGVRGVISAPVDVDEQVIGAINLYASTPdALTTRHQLTAMLLAEHAG 167
                 ******..8889****************************8885554444444466666665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.54
                 EEEEEEEEEESSSCSHHHHHHHHHHHHH CS
         GAF 100 elwGllvlhnpsppftreelellqvlad 127
                 + +G++   +  p   +e+le+l++ a+
  KIR62237.1 198 QAIGVIMTQRGCP--APEALEVLRSAAT 223
                 4566666666333..3455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1632.72
//
Query:       KIR62238.1  [L=63]
Description: hypothetical protein TK50_29255 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 460.30
//
Query:       KIR62239.1  [L=1167]
Description: methionine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-63  214.9   0.1    3.1e-63  214.1   0.1    1.4  1  S-methyl_trans  Homocysteine S-methyltransferase
    3.1e-43  148.2   0.0    6.8e-43  147.1   0.0    1.6  1  Pterin_bind     Pterin binding enzyme
      2e-37  129.2   0.0    3.2e-37  128.5   0.0    1.3  1  Met_synt_B12    Vitamin B12 dependent methionine synthase, ac
    9.3e-27   93.3   0.2    1.3e-25   89.6   0.1    2.8  2  B12-binding_2   B12 binding domain
    1.3e-20   73.6   0.2    2.5e-19   69.5   0.3    2.8  3  B12-binding     B12 binding domain
  ------ inclusion threshold ------
       0.14   12.5   0.0       0.44   10.9   0.0    1.9  1  CM_2            Chorismate mutase type II


Domain annotation for each model (and alignments):
>> S-methyl_trans  Homocysteine S-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.1   0.1     1e-66   3.1e-63       1     267 [.      10     299 ..      10     300 .. 0.86

  Alignments for each domain:
  == domain 1  score: 214.1 bits;  conditional E-value: 1e-66
                     EEB---SHHHHHHT....----STTH....HCCHH..H-HHHHHHHHHHHHHHT-SEEE-TTTT--.GG.....T--HHHHH.HHHHHHHHHHHH CS
  S-methyl_trans   1 lilDGgmgteLerr....adlseelw....saell..trpelikeihrdyleaGadiieTnTyqas.kik....gleeeeeveelnraavelare 80 
                     l+ DG+mgt+L++      d          ++e+l  trp++++ +h++yl+aGad++eTnT++a+ + +    g+e  +++ el +a++++are
      KIR62239.1  10 LVADGAMGTMLQAAeltlDDF----EghegCNEILnvTRPDVVRGVHDAYLAAGADCVETNTFGANlA-NlgeyGIE--HRIGELSEAGARIARE 97 
                     699*********964444344....34455*****888****************************61.34433566..**************** PP

                     HHHHH.......HEEEEE--HHHHCTS---.--HHHHHHHHHHHHHHHHHCT-SEEEEEEE--HHHHHHHHH....HHT.T...--EEEEE-ECC CS
  S-methyl_trans  81 aadeaaa...plfvagsvGpygatlsdgydllsfeelveahreqiralleagvDlllietipdlleakaave....llaae...lpvwisftikd 165
                     aad++ +   p+fv g++Gp +++ + g  +  +++l++a+++ +++ll++gvD l++et++dll++kaav     ++a+    +p+++ +t++ 
      KIR62239.1  98 AADAWGTaerPRFVLGAIGPGTKLPTLG--HAAYATLRDAYQQNAAGLLAGGVDALIVETCQDLLQVKAAVVgshrAMAEAgrrVPLICHVTVET 190
                     *****999************99998776..36899***********99**********************665444333326679********75 PP

                     T.TETTS-BHHH.HHHHHCT-TE.EEEEEES--.GGGHHHHHHHHHTT--S-.EEEE--.......-.S-----------....-HHHTT.EEEE CS
  S-methyl_trans 166 estlrsGetleeavaalaaatqp.lavgvNCak.peelepllkelksetalpavivypn.......sagevydltpeewaesaeewleag.anii 250
                     + t+  G+++ +a++al+      + +g+NCa+ p e++++l+ l+++ ++p ++v pn       ++g vy ltp e+a+ +e+++++  ++++
      KIR62239.1 191 TGTMLLGSEIGAALTALEPL--GiDLIGLNCATgPAEMTEHLRYLSRHARVP-LSVMPNaglpqltADGAVYPLTPVELADALERFVAEYgVAVV 282
                     546559*************9..5599*******************7777777.******99998754788***************996666**** PP

                     ---TT--HHHHHHHHH. CS
  S-methyl_trans 251 GGCCgttpehIraiaea 267
                     GGCCgttpehIr +ae+
      KIR62239.1 283 GGCCGTTPEHIRLVAER 299
                     ************99986 PP

>> Pterin_bind  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.1   0.0   2.3e-46   6.8e-43       1     244 []     335     571 ..     335     571 .. 0.97

  Alignments for each domain:
  == domain 1  score: 147.1 bits;  conditional E-value: 2.3e-46
                  EEEEETTTTTCHCCHHC.THHHHHHHHHHHHHHTT-SEEEEESS-TSTT--CCHHHHHHHHHHHHHHHHHHHC.TSEEEEE-S-HHHHHHHHHT..TS CS
  Pterin_bind   1 mgilNvtpdsfsdggkf.edldkalaqarkmveeGAdilDiggestrPgaervdeeeelervvpvlealrdea.dvpisiDttkaevaeaAlka..ga 94 
                  ++++N+++++ +++++   d++++++ ar++ ++G ++lD++++++      +d+ ++++ ++   +    +a ++p+++D+t++ v+ea+l+   g+
   KIR62239.1 335 GERTNANGSKAFREAMLaGDWQACVEIARSQARDGSHLLDLCVDYV-----GRDGTRDMRELAGRFA----TAsTLPVMLDSTEPAVIEAGLEMlgGR 423
                  699**************9****************************.....***************9....44499*******************99* PP

                  EEEEETTTTS......SSTTHHHHHHHHT-EEEEESECSSTTTHCCCCCCCSSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTS..STTHHHHHH CS
  Pterin_bind  95 divNdvsgee......rdpkmlelvaeagaavvvmhmrgtpktmqeeegqyedvveeveaflearveaaeeaGvaperillDpgigf..gkteehnle 184
                  ++vN+v+ e+      r ++++++v+e+gaavv++ ++        eegq+++++ +v+++ +  ++ + ++G+++++il+D ++++  +++ee++ +
   KIR62239.1 424 CVVNSVNFEDgdgpgsRYARVMPVVVEHGAAVVALLID--------EEGQARTAEWKVRVAQRLIEDLTGRWGLRRSDILIDALTFPiaTGQEETRRD 513
                  **********999999999*******************........459*************************************999********* PP

                  HHHTHHHHHHTTS....SEBEEEGTTGHHHHHHHCTTCHGHHHHHHHHHHHHHHHTT-SEEEES CS
  Pterin_bind 185 llrrldelreale....vpvllGvSrksflgrllelgkaeeRdagtaaflalaaaaGadivrVh 244
                   +++++++re+ +    v ++lGvS++sf +++       +R++++++fl+++++aG++ ++Vh
   KIR62239.1 514 GVETIEAIREIARrwpgVNFTLGVSNVSFGLNPA------ARQVLNSVFLHECVRAGLTSAIVH 571
                  ********999999999***************65......9**********************9 PP

>> Met_synt_B12  Vitamin B12 dependent methionine synthase, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.5   0.0   1.1e-40   3.2e-37      47     256 ..     959    1165 ..     930    1167 .] 0.91

  Alignments for each domain:
  == domain 1  score: 128.5 bits;  conditional E-value: 1.1e-40
  Met_synt_B12   47 llkriieekllkakavvglfpAnsegddievytdesrsevlatlhtLRqqeekeeeepnlcLaDfvapkesgikdyiGlFavtagigieelaekf 141 
                     l+r++++k l+a  v+g fpA seg+d++v  de+ +++ +++ + Rq +e+      lcLaDf +p+ +g+ d+++l  vt+g  i+++++k 
    KIR62239.1  959 WLDRLTADKVLEAAVVYGYFPAYSEGNDLMVL-DEDGRTERTRFSFPRQRQER-----RLCLADFFRPRGDGL-DVVALQLVTVGQPISDYTAKM 1046
                    699****************************7.777777799*******9666.....6*********99996.****************99988 PP

  Met_synt_B12  142 eaekddYss.ilvkaladrLaeAfaellhekvrkelW.....gyakdeklsneelikekyqgirpApGYpacpdhtekktlfelldaeekigieL 230 
                     a  ++Y+  + v+ l+ +L+eA+ae+ h+++r el        a d+  +   l++++y+g r+A+GYpacpd ++++++++ll ae+ ig++L
    KIR62239.1 1047 FAG-NSYRDyLEVHGLSVQLTEALAEYWHRRIRAELTlpggrTVADDDPADLAGLLRTDYRGCRYAFGYPACPDLEDRAKIVDLLGAER-IGVQL 1139
                    777.56655155899*******************985333335789999999************************************9.***** PP

  Met_synt_B12  231 teslamvPaasvsGlyfahpearYfa 256 
                     e++ +vP+ +  ++++ hpea+Yf+
    KIR62239.1 1140 SEEFQLVPEQATDAIVVHHPEASYFN 1165
                    *************************8 PP

>> B12-binding_2  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       0.4   1.2e+03       4      37 ..     345     378 ..     343     391 .. 0.85
   2 !   89.6   0.1   4.4e-29   1.3e-25       2      75 .]     633     706 ..     632     706 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.4
  B12-binding_2   4 rlhwaivhgdkegieelidealaqgsaavdvlnd 37 
                    ++++a+++gd ++++e+++   + gs ++d++ d
     KIR62239.1 345 AFREAMLAGDWQACVEIARSQARDGSHLLDLCVD 378
                    6789************999888788888887765 PP

  == domain 2  score: 89.6 bits;  conditional E-value: 4.4e-29
  B12-binding_2   2 aerlhwaivhgdkegieelidealaqgsaavdvlndvllpamkeVGdlfgagelflpqvllsaevmkkavahLe 75 
                    +erl++ iv+g+++g+e+++d a+a g +++ ++nd+ll++m++VG+lfg+g+++lp+vl+saevmk+ava+Le
     KIR62239.1 633 EERLRRRIVDGERNGLEADLDAAMAGGRSPLSIINDLLLDGMRVVGELFGSGQMQLPFVLQSAEVMKTAVAYLE 706
                    79**********************99999*******************************************97 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.9   8.6e+03      46      64 ..     206     223 ..     171     241 .. 0.63
   2 ?    0.3   0.0      0.23   6.9e+02      41      82 ..     268     307 ..     251     308 .. 0.83
   3 !   69.5   0.3   8.5e-23   2.5e-19       2     120 ..     719     837 ..     718     838 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.9
  B12-binding  46 airaekpdvvglSalltsq 64 
                  a++ +  d++gl +  t  
   KIR62239.1 206 ALEPLGIDLIGLNC-ATGP 223
                  44555678888888.4433 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.23
  B12-binding  41 edivaairaekpdvvglSalltsqleavkelvellkrirprv 82 
                  +++++ +++  + vvg     +++ e+++ ++e+l+++rp++
   KIR62239.1 268 DALERFVAEYGVAVVGGC--CGTTPEHIRLVAERLRGARPGA 307
                  778888889999999995..599999**********999986 PP

  == domain 3  score: 69.5 bits;  conditional E-value: 8.5e-23
  B12-binding   2 kvllatvggdlhplGlavlaaalrdagfeVqllganvenedivaairaekpdvvglSalltsqleavkelvel..lkrirprvkvvvGGahps.ldpe 96 
                  +++latv+gd+h++G++++  +l+++g+eV+++g++++  +i++a++++++d++g+S ll ++   +ke + +  ++++  r +v++GGa+ + ++ e
   KIR62239.1 719 RIVLATVKGDVHDIGKNLVDIILSNNGYEVVNIGIKQPISAILDAAEQHRADAIGMSGLLVKSTVIMKENLAEmaERGVAQRWPVLLGGAALTrAYVE 816
                  79*********************************************************999999998888888*9*************986524445 PP

  B12-binding  97 etleak.lgiddvvvgegedaleal 120
                  + l+a+ +g  +    +++da+e l
   KIR62239.1 817 DDLRAAfPG-QV---HYARDAFEGL 837
                  556666677.55...7888888765 PP

>> CM_2  Chorismate mutase type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00015      0.44      21      51 ..     839     868 ..     836     890 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHCTSGSS-HHHHHHHHHHHHH CS
        CM_2  21 lakevgeyKkeeglpvydpeReaevlerlee 51 
                 l+++v+ +K ++g+pv dp+Rea++ +r+++
  KIR62239.1 839 LMDRVMTAK-RGGAPVVDPQREAALAARRQR 868
                 7899*****.7999************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 8338.51
//
Query:       KIR62240.1  [L=339]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2240.95
//
Query:       KIR62241.1  [L=328]
Description: SAM-dependent methlyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-29  100.6   0.8    5.6e-29   99.7   0.8    1.4  1  GCD14_N          tRNA methyltransferase complex GCD14 subunit
      6e-21   75.2   0.0    4.4e-20   72.4   0.0    2.2  3  GCD14            tRNA methyltransferase complex GCD14 subunit
    6.4e-06   26.8   0.0    1.5e-05   25.6   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
      3e-05   23.9   0.0    4.2e-05   23.4   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    0.00065   19.5   0.0    0.00093   19.0   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
     0.0037   16.4   0.0     0.0053   15.9   0.0    1.1  1  RrnaAD           Ribosomal RNA adenine dimethylase
     0.0039   18.2   0.4      0.011   16.7   0.1    1.9  2  Methyltransf_24  Methyltransferase domain
  ------ inclusion threshold ------
      0.012   16.4   0.0      0.029   15.1   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
      0.025   14.4   0.0      0.079   12.8   0.0    1.8  1  Methyltransf_23  Methyltransferase domain
      0.032   14.9   0.0       0.08   13.6   0.0    1.7  1  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> GCD14_N  tRNA methyltransferase complex GCD14 subunit N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.8   3.1e-32   5.6e-29       1      51 []      16      66 ..      16      66 .. 0.99

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 3.1e-32
     GCD14_N  1 rGpfraGdrVqLtDaKgrkhtitLepGgefhthrGaieHDdlIGrpeGsVV 51
                rGpfr+GdrVqLtD+Kgr+ht+tLe G+efhthrG+++HD lIG p+GsVV
  KIR62241.1 16 RGPFRPGDRVQLTDPKGRMHTVTLEHGKEFHTHRGILAHDALIGLPDGSVV 66
                8*************************************************9 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.35   6.3e+02      11      53 ..      33      75 ..      25      82 .. 0.60
   2 !   72.4   0.0   2.5e-23   4.4e-20      13     180 ..      85     249 ..      74     264 .. 0.87
   3 ?   -1.5   0.0      0.89   1.6e+03     227     246 ..     251     270 ..     247     271 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.35
       GCD14 11 eLWtlaLphrtqilytaDisliimkLelkpGsvvvesGtGsgs 53
                 + t++L+h         i      + l  Gsvv  sG G++ 
  KIR62241.1 33 RMHTVTLEHGKEFHTHRGILAHDALIGLPDGSVVTTSGGGTAF 75
                4455555555555555555444455566777777777777765 PP

  == domain 2  score: 72.4 bits;  conditional E-value: 2.5e-23
       GCD14  13 WtlaLphrtqilytaDisliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefre..helsqlvtvthrDvc...keGf 106
                 + l++p  +q++y +D + i+ + ++ pG++v+e+G+Gsg+ls +++r+v+ tG l+++e  ++ a+ ar + +   h+ +    +++ Dv    ++Gf
  KIR62241.1  85 YVLSMPRGAQVIYPKDSAQIVAMGDIFPGAKVLEAGAGSGALSCSLLRAVGTTGELHSYELRDDFAQIARRNVEAffHGPHPAWRLHVGDVAdcaETGF 183
                 56788999**************************************************************99886335556666677666642126677 PP

       GCD14 107 deevsgkvDavfLDlPaPweaiphaakalkkeggrlCsfsPCieqvqrtceaLrel.gfteietlevllrtyevr 180
                         D + LD+ +Pwea++ + +al   gg++  +     q+ + +eaLre  g+te ++ e l+r +++ 
  KIR62241.1 184 --------DRIILDMLTPWEALDMVERAL-VPGGVFIGYVATTPQLSELVEALRERgGWTEPRAWESLVRDWHAE 249
                 ........9999*****************.9***********************9746**************986 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.89
       GCD14 227 vllkPvselkghtgyLtfat 246
                 ++++P + + +ht++L+ a+
  KIR62241.1 251 LAVRPDHRMIAHTAFLVSAR 270
                 678999999*******9886 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   8.3e-09   1.5e-05       1      97 []     116     208 ..     116     208 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 8.3e-09
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHH..TTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraee..egl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkei 89 
                      vL++G+G+G l+  l++++g  ++++  ++ +++ ++ar+++e+  +g+   +++++gd+ d+ +    fD +++  +l  ++     +al+ +
       KIR62241.1 116 VLEAGAGSGALSCSLLRAVGtTGELHSYELRDDFAQIARRNVEAffHGPhpAWRLHVGDVADCAE--TGFDRIILD-ML--TP----WEALDMV 200
                      8******************779********************9999666779**********985..46*****93.42..22....2578888 PP

                      HHHEEEEE CS
  Methyltransf_25  90 arvLkpgG 97 
                       r+L pgG
       KIR62241.1 201 ERALVPGG 208
                      88888888 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.4e-08   4.2e-05      45     121 ..      84     160 ..      78     217 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.4e-08
                 SS-EEEETTEEE--HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHC CS
        PCMT  45 daplsigynatiSaphmvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkl 121
                 d +ls+  +a +  p+  a ++ + ++ +ga+vLe G+GsG l+  l r vg++g + s e   ++++ a+rn+++ 
  KIR62241.1  84 DYVLSMPRGAQVIYPKDSAQIVAMGDIFPGAKVLEAGAGSGALSCSLLRAVGTTGELHSYELRDDFAQIARRNVEAF 160
                 67888888899999999999999999************************************************974 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.2e-07   0.00093       4     121 ..     113     223 ..     110     248 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.2e-07
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld...nveFeqgdiee.leklledekfDlilsnevlnaladpdki 93 
                      g +vl++G+G+G+l+  l + +g+ +e+++ +   +  + Ar n +  +       ++++gd+ + +e       fD i+ +     +  p ++
       KIR62241.1 113 GAKVLEAGAGSGALSCSLLRAVGTTGELHSYELRDDFAQIARRNVEAFFHGphpAWRLHVGDVADcAE-----TGFDRIILD-----MLTPWEA 196
                      679****************************************9886544455999*********666.....57***9995.....7789999 PP

  Methyltransf_31  94 leeiervlkpggilliedprllaelpak 121
                      l  +er+l pgg+++  ++ +  +l + 
       KIR62241.1 197 LDMVERALVPGGVFI-GYVATTPQLSEL 223
                      999999999999997.444444444444 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     3e-06    0.0053      20      73 ..     102     158 ..      96     170 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3e-06
                 HHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-...SEEEEE-S-HHHHHHHHCHTT CS
      RrnaAD  20 neIldklnleekltvleigpGkGilTeeLakra...kqvvvlElderLakllqkkls 73 
                 ++I+   ++ +  +vle g+G G+l+ +L+  +    ++ ++El+ ++a++ + +++
  KIR62241.1 102 AQIVAMGDIFPGAKVLEAGAGSGALSCSLLRAVgttGELHSYELRDDFAQIARRNVE 158
                 6899999999*******************9999988999***********9998765 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   6.3e-06     0.011       1     102 [.     117     211 ..     117     212 .. 0.88
   2 ?   -1.7   0.0       3.3     6e+03      38      60 ..     289     312 ..     237     322 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.3e-06
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalare......aglddrvrlikadseealaslaagsiDllfiDgghaaeavledl 88 
                      +E G+ sG  ++ llra+  +g+  l++ +      ++a++ar+      +g +  +rl+++d  + ++      +D +++D+     +  e+l
       KIR62241.1 117 LEAGAGSGALSCSLLRAVGTTGE--LHSYELRD---DFAQIARRnveaffHGPHPAWRLHVGDVADCAE----TGFDRIILDML----TPWEAL 197
                      799999**************996..******99...99999999888999999999******9999843....56899999988....677888 PP

  Methyltransf_24  89 eallprlapggvvl 102
                      +++++ l pggv++
       KIR62241.1 198 DMVERALVPGGVFI 211
                      89999999999876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.3
  Methyltransf_24  38 aaalare.aglddrvrlikadsee 60 
                      a+a+a++ + l++ ++ ++a + +
       KIR62241.1 289 AEAYAERkQALRAAAEARQAAAAQ 312
                      333333334444455555554444 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   1.6e-05     0.029       1      99 []     117     210 ..     117     210 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.6e-05
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklL 93 
                      Le G+G+G+l+  ll++   + e++ +++  ++ + a++   +     +  ++l + d++d ++   fD +++  +     ++ e+ld + ++L
       KIR62241.1 117 LEAGAGSGALSCSLLRAVgTTGELHSYELRDDFAQIARRNVEAFFHGPHPAWRLHVGDVADCAET-GFDRIILDML-----TPWEALDMVERAL 204
                      89****************9******************************************9997.****996544.....566999******* PP

  Methyltransf_12  94 kpgGrl 99 
                      +pgG++
       KIR62241.1 205 VPGGVF 210
                      **9985 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.4e-05     0.079      20     136 ..     110     249 ..      99     273 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.4e-05
  Methyltransf_23  20 lraggrvLdiGcGtG.illevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeq.......eaaepqgkfdlIvlrevlehvpdppell 102
                       ++g++vL+ G+G+G   +++lr+ g+  ++  ++l++   +ia+ +    ++ ++           a++ +  fd I+l +++     p e+l
       KIR62241.1 110 IFPGAKVLEAGAGSGaLSCSLLRAVGTtgELHSYELRDDFAQIARrNVEAFFHGPH-PAwrlhvgdVADCAETGFDRIILDMLT-----PWEAL 197
                      58899**********4468888**99977777888887777777643333333333.222333333334466688888888776.....66788 PP

  Methyltransf_23 103 rqiatllkpgGylllseplasl..................kedrllldwlyl 136
                      +++ + l pgG+++  + + ++                  ++++l++dw+++
       KIR62241.1 198 DMVERALVPGGVFIGYVATTPQlselvealrerggwteprAWESLVRDWHAE 249
                      8888888888888877766666666777778888777776677777777776 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.4e-05      0.08       1      95 [.     117     211 ..     117     212 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.4e-05
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-....EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl....kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRv 87 
                      L++G+G+G+l++ l +++   +++   +l + + ++a+++++   +      +++v+d+ +   ++  fD +++ +       p +al+ + R 
       KIR62241.1 117 LEAGAGSGALSCSLLRAVgttGELHSYELRDDFAQIARRNVEAFFHgphpAWRLHVGDVAD--CAETGFDRIILDMLT-----PWEALDMVERA 203
                      799************7777999999*********9999998877668888678999****8..89999****988654.....5569******* PP

                      EEEEEEEE CS
  Methyltransf_11  88 LkpgGllv 95 
                      L pgG+++
       KIR62241.1 204 LVPGGVFI 211
                      *****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2506.56
//
Query:       KIR62242.1  [L=82]
Description: hypothetical protein TK50_29510 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.5   0.9      0.014   15.5   0.9    1.2  1  DUF2269   Predicted integral membrane protein (DUF2269)
      0.046   12.8   0.4      0.051   12.6   0.4    1.0  1  DUF898    Bacterial protein of unknown function (DUF898)


Domain annotation for each model (and alignments):
>> DUF2269  Predicted integral membrane protein (DUF2269)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.9   1.6e-06     0.014      77     125 ..       3      53 ..       1      78 [. 0.73

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.6e-06
     DUF2269  77 sWlllslvLylla..galwlpVvwlqirlrrlaeaaeeegaalpeeyvrlf 125
                 +W+++ +vL++++  g+++ pV+++  rlrr+a a + ++a+ ++  v++ 
  KIR62242.1   3 KWIVVAVVLFAFVvlGLAVRPVLVRLPRLRRAAMALQGRQAEAEALRVSAE 53 
                 7********876522679999998888888888877766665665555554 PP

>> DUF898  Bacterial protein of unknown function (DUF898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   5.7e-06     0.051     281     337 ..       4      57 ..       1      64 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.7e-06
      DUF898 281 llyitnlllllltLGlarpwarvrlaryvaesvtlegegdldqvvaakrqassalge 337
                 ++++  +l  +++LGla++ + vrl r + + ++l+g ++ ++ +  + +a   l+e
  KIR62242.1   4 WIVVAVVLFAFVVLGLAVRPVLVRLPRLRRAAMALQGRQAEAEALRVSAEA---LQE 57 
                 8999999******************************99988888444444...444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1576  (0.0879023); expected 358.6 (0.02)
Passed bias filter:                      884  (0.0493056); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 598.45
//
Query:       KIR62243.1  [L=171]
Description: Rieske (2Fe-2S) protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-14   51.5   0.0    1.1e-13   50.9   0.0    1.3  1  Rieske      Rieske [2Fe-2S] domain
  ------ inclusion threshold ------
      0.038   13.9   0.0      0.061   13.3   0.0    1.4  1  Rieske_2    Rieske-like [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   1.3e-17   1.1e-13       7      86 ..      82     157 ..      76     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 1.3e-17
                 EGGGC-.TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEE.TTSBEEE-TTHHHEE CS
      Rieske   7 kesdvp.egdpltvkvggeplvvlrdedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwayd.adGkvikgPaprpla 86 
                 ++ d+p  g   +  + ++ +v+ r  +++v+A+s +CtH+g+++++  + ++g+++C cH++++d adG+v++gPa +pl+
  KIR62243.1  82 AVADLPvGG---GRILADRGVVLTRPTQETVKAYSATCTHAGCTVTR--V-DGGTIVCGCHNSKFDiADGSVRGGPAGSPLP 157
                 566666322...334567779999988*****************987..3.4559**********************99886 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.9e-06     0.061      20     102 ..      93     169 ..      78     171 .] 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.9e-06
                 EETTEEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-BBSS.-TTSB-BEE-EEESTSEEE CS
    Rieske_2  20 lvdgkqvalfrlekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGecle.deevslkvypvrvedgkve 102
                  + ++ v+l r ++e+v A +++++         G   ++ +  ++++  +++kfd+++G++    +  +l+  +v v+dg+v 
  KIR62243.1  93 ILADRGVVLTRPTQETVKAYSATCTH-------AGCTVTRVDGGTIVCGCHNSKFDIADGSVRGgPAGSPLPPVAVSVRDGQVL 169
                 45678899999999999999999988.......48888888999******************98455699**********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1255.31
//
Query:       KIR62244.1  [L=170]
Description: hypothetical protein TK50_29530 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1146.50
//
Query:       KIR62245.1  [L=278]
Description: hypothetical protein TK50_29630 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-17   61.4  16.4      9e-17   61.4  16.4    1.5  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4  16.4     5e-21     9e-17       2     179 ..      74     273 ..      73     277 .. 0.91

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 5e-21
  BPD_transp_1   2 illGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvf..................vilsilghlilpviillllsaapyvrlirraalrs 78 
                   i +++++a  l r+ +l  l r+li ++ ++P  v ai++ ++f                   +l +  ++ ++++il+ +  ++y + +  a++ +
    KIR62245.1  74 IAVALFLAvlLTRHIPLVGLWRTLILLPIAIPQTVSAIVWGVLFrpdgplngllgtlgipavPWLVSPDTALMSIVILCSWVGVGYWMTFLVAGIHE 170
                   667788888888999************************99999*****************8888888888888*********************** PP

  BPD_transp_1  79 lpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG..lgtllleailgydyseisnggvlalviavlllnlvad 173
                   +p++l+ea+ ++Ga+ w+ f++++lP + +p++  l+   ++++  ++ + +l+++++   ++l++++i ++ y+++  g+++a++++++ +++v+ 
    KIR62245.1 171 IPRSLYEASDLDGAGGWKQFVHITLPGIRRPLLFVLVADTVANFLVFAPVRILTQGGPegSTNLIMNFIFERAYTLADTGSSAAATVVLVSIVIVVV 267
                   *****************************************************9887788999***************8888888888888888887 PP

  BPD_transp_1 174 ilqrll 179
                   + q  l
    KIR62245.1 268 AAQFRL 273
                   777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2089.92
//
Query:       KIR62246.1  [L=298]
Description: hypothetical protein TK50_29650 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-44  150.6   0.0    6.1e-44  150.4   0.0    1.0  1  DHO_dh        Dihydroorotate dehydrogenase
      1e-09   38.2   5.9      3e-09   36.7   0.9    2.3  2  NMO           Nitronate monooxygenase
    2.2e-08   33.6   0.6     0.0027   16.9   0.1    2.1  2  Dus           Dihydrouridine synthase (Dus)
    6.3e-06   25.8   0.1    2.4e-05   23.9   0.0    1.8  2  His_biosynth  Histidine biosynthesis protein
    0.00011   21.4   2.5    0.00068   18.8   2.5    2.0  1  FMN_dh        FMN-dependent dehydrogenase
     0.0004   19.5   2.1    0.00095   18.3   1.5    1.7  2  IMPDH         IMP dehydrogenase / GMP reductase domain
     0.0012   18.2   2.3     0.0063   15.9   0.2    2.3  2  ThiG          Thiazole biosynthesis protein ThiG
     0.0073   15.5   1.7       0.08   12.1   0.1    2.1  2  DUF561        Protein of unknown function (DUF561)
  ------ inclusion threshold ------
      0.054   12.9   0.3       0.41   10.0   0.0    2.1  2  G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
       0.15   11.2   1.5        0.5    9.5   0.1    2.1  2  NanE          Putative N-acetylmannosamine-6-phosphate epimer
       0.37   10.1   2.5        3.7    6.8   0.2    3.0  3  TMP-TENI      Thiamine monophosphate synthase


Domain annotation for each model (and alignments):
>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.4   0.0   3.7e-47   6.1e-44       3     293 ..       2     277 ..       1     279 [. 0.92

  Alignments for each domain:
  == domain 1  score: 150.4 bits;  conditional E-value: 3.7e-47
                 -EEETTEEESSSEEE-TTSSTTSSSHHHHHCTT.SSEEEEEEE-SS-B--S-S--EEEETTCTEEEE---S-BS-HHHHHHHHHHHHHHHHCC.CEEEE CS
      DHO_dh   3 atkvlglkfknpiglAaGfdkegeeilkllklg.fgaieigsvtpkpqeGnpkPrvfrlkedrsvlNslGlnneGldavlekllkrrkeqeekkelgin 100
                 ++++ gl ++ p+++A+G++  g e+ +ll +  ++a+ +++v ++++ Gnp+ r+ +++++  v+Ns+G+++ G    l +  +  +  +    ++ +
  KIR62246.1   2 SVRIRGLALASPVMPASGCF--GPELGRLLPMReLAAAVTKTVFLQARAGNPAHRLTEIPAG--VVNSVGIPSRGPRGFLTHQYPDYQALP----APTI 92 
                 57899*************97..678888888888****************************..**************9999888887755....5788 PP

                 EEE-TTSS.HHHHHHHHHHHHGGGESEEEEES-SCTCC.TSCCCGCHHHHHHHHHHHHHHHHSSEEEEEE-SSSSHHHHHHHHHHHHHHTECEEEE... CS
      DHO_dh 101 lskakktenavddyvevvrkigpfadilelNvSsPntp.glrdlqekeelkaillkvvkevskvpvlvKlaPdltdeekkdiadvllelkldgiivtNt 198
                 +s+ ++     ++y +v++++g      elNvS+Pn    +rd++++++   ++++ v++v+++pv++Kl+       +++ a  ++e + d++ v+N+
  KIR62246.1  93 VSIGGHA---PAEYEQVAEQLGGAGAGYELNVSCPNLDtDGRDIGSDPAALFETVARVRAVTDKPVIAKLPV--MVASIAECARAAQEAGADAVCVANS 186
                 8888887...99**********999999*********999******************************76..55566677777889999******** PP

                 BSEE--CTTCCGCCCCTTSSEEEEEGGGHHHHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCHHHHHHHHHHH CS
      DHO_dh 199 tvqrlaidlkseknvkanktGGlsGkalkdialkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegpkiakkikkelee 293
                 + + + ++  s ++   n+ GGl G+++++i l++++  +k ++  +p+I++GGi +++ ale++  GAs+vqv+ta+ f+ p++++++ ++l +
  KIR62246.1 187 VPSLP-LEPGSLRPALGNRVGGLTGPHIRPIVLRLVWLAAKAVD--VPVIACGGIATADHALEYLSVGASAVQVGTAN-FSRPTAMVDVVRGLRS 277
                 *9999.99999999999**************************9..********************************.***********99976 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.3     0.022        36      54     160 ..     144     181 ..     110     189 .. 0.69
   2 !   36.7   0.9   1.8e-12     3e-09     164     224 ..     202     260 ..     199     272 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.022
         NMO  54 irkvkaltdkPfgvnlflpkkdaadraekykkeleeaalelnieegvrfyrkvevvldekvevvsfgfglpteevvarlkeagvvliptissvkearkv 152
                 +++v+a+tdkP+ + l +  ++ a+                                                                      ar++
  KIR62246.1 144 VARVRAVTDKPVIAKLPVMVASIAEC---------------------------------------------------------------------ARAA 173
                 55566666666655555555555555.....................................................................4444 PP

         NMO 153 earGaDal 160
                 +++GaDa+
  KIR62246.1 174 QEAGADAV 181
                 44444444 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 1.8e-12
         NMO 164 GpeaGGhqGtpevgdkglfaLvpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqigtr 224
                 G   GG +G p++     ++Lv  +++avd+PviA GGi ++      L++GAs+vq+gt+
  KIR62246.1 202 GNRVGGLTG-PHIR-PIVLRLVWLAAKAVDVPVIACGGIATADHALEYLSVGASAVQVGTA 260
                 788899999.5553.5689*****************************************8 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.7e-06    0.0027      54     157 ..      89     183 ..      76     184 .. 0.89
   2 !   15.2   0.1   5.5e-06    0.0089     180     224 ..     226     269 ..     221     285 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.7e-06
                 SCEEEEEE-S-HHHHHHHHHHHHHTT-SCEEEEESSTTEEETTEEEGGGGGGSHHHHHHHHHHHHCCSSS-EEEEEESESSTTTC.HHHHHHHHHHCT- CS
         Dus  54 tplavQlggsdpallaeaAklvadlgadeIdlNvGCPskkvtrggaGaaLlrkpdlvaqivkavvkaveiPvtvkirigiddeeenalelakiveaaGa 152
                  p++v +gg+ pa+  + A+        + +lNv CP     ++++G+    +p+ + + v+ v+  ++ Pv +k  + +      + e a+++++aGa
  KIR62246.1  89 APTIVSIGGHAPAEYEQVAEQLGG-AGAGYELNVSCPNLDTDGRDIGS----DPAALFETVARVRAVTDKPVIAKLPVMVA----SIAECARAAQEAGA 178
                 5799***************99888.56689*****************9....8**************************99....5688********** PP

                 SEEEE CS
         Dus 153 qaltv 157
                 +a+ v
  KIR62246.1 179 DAVCV 183
                 *9976 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 5.5e-06
                 HH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHH CS
         Dus 180 qavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfa 224
                 +av +pvia G+I +a+ a + l+  Ga +v +g ++ ++P+ + 
  KIR62246.1 226 KAVDVPVIACGGIATADHALEYLSV-GASAVQVGTANFSRPTAMV 269
                 5789*********************.***************9774 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.56   9.2e+02     170     197 ..     127     158 ..     101     187 .. 0.53
   2 !   23.9   0.0   1.5e-08   2.4e-05      60     127 ..     216     283 ..     208     288 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.56
                   TTTTTSS---....HHHHHHHHHHHSSEEEEE CS
  His_biosynth 170 drdGtlsGpd....leltkelaeavkipvias 197
                   d+dG   G d    +e + ++++ ++ pvia 
    KIR62246.1 127 DTDGRDIGSDpaalFETVARVRAVTDKPVIAK 158
                   55555555553222233444444455555553 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 1.5e-08
                   HHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH-THHHHHHHHHHCGGGEEEE CS
  His_biosynth  60 anldlveeiaeevfipvqvGGGIrsledveelleagadkviigtaavknpelikelaekfgsqkivva 127
                   + l lv   a++v++pv   GGI + +++ e+l+ ga+ v +gta +++p  + ++++   s + +++
    KIR62246.1 216 IVLRLVWLAAKAVDVPVIACGGIATADHALEYLSVGASAVQVGTANFSRPTAMVDVVRGLRSRCHAAG 283
                   55677777899***************************************999999888877776665 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   2.5   4.2e-07   0.00068     199     301 ..     135     259 ..     100     297 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4.2e-07
                 B-TC--HHHHHHHHHHHSSEEEEEE.E...-SHHHHHHHHHTTESEEEE--GGG...............TSSTT---HHHCH.....HHHHHHH..... CS
      FMN_dh 199 ldpsltwddikwlreqtklplvvKG.v...ltaedakraveaGvdgivvSNHGG...............RqldgapatidvL.....peiveav..... 268
                 +dp+  +++++++r+ t+ p++ K  v     ae a+ a eaG+d++ v+N                  R                 p+i+  v     
  KIR62246.1 135 SDPAALFETVARVRAVTDKPVIAKLpVmvaSIAECARAAQEAGADAVCVANSVPslplepgslrpalgnR-----------VggltgPHIRPIVlrlvw 222
                 4888999*****************5233333456788899***********9875555555554444432...........033333444332233333 PP

                 ......SS-EEEESS--SHHHHHHHHHTT-SEEEESH CS
      FMN_dh 269 ...gg.rievlvDgGirrGsDvlkAlalGAdavllGR 301
                    +  +++v++ gGi +  ++l  l +GA+av +G 
  KIR62246.1 223 laaKAvDVPVIACGGIATADHALEYLSVGASAVQVGT 259
                 3322237****************************96 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   1.5   5.8e-07   0.00095     156     237 ..     167     259 ..     138     264 .. 0.71
   2 ?   -1.5   0.0      0.59   9.6e+02     304     325 ..     269     290 ..     260     295 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.8e-07
                 HHHHHHHHHTT-SEEEE-.......SS-STT..BHHHHHCSB---HHHHHHH..HHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESC CS
                 xxxxxxxxxxxxxxxxxx.......xxxxxx..xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 156 aegakaLieagadavkvG.......iGpGsi..CttrvvagvGvpqltAvae..vaeaakkagvpviaDGGikysgdivkAlaaGadavmlGs 237
                 ae a+a  eagadav v        + pGs+       v g+  p +  ++   v  aak  +vpvia GGi +  +    l++Ga+av +G 
  KIR62246.1 167 AECARAAQEAGADAVCVAnsvpslpLEPGSLrpALGNRVGGLTGPHIRPIVLrlVWLAAKAVDVPVIACGGIATADHALEYLSVGASAVQVGT 259
                 35566667888888877533333335678874456778888888988877642255689999****************************996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.59
                 HHHHHHHHHHHHHHT-SSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 304 eqlvgglrsgmgylGaktieel 325
                   +v glrs ++ +G++t+++l
  KIR62246.1 269 VDVVRGLRSRCHAAGVTTLSAL 290
                 56899************99987 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.076   1.2e+02     174     207 ..     157     187 ..     120     191 .. 0.68
   2 !   15.9   0.2   3.8e-06    0.0063     170     206 ..     223     260 ..     199     293 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.076
                 -SS-BEEES---SHHHHHHHHHTT-SEEEESHHH CS
        ThiG 174 akvPvivDAGigspsdaaqamelGadavllntav 207
                 ak+Pv+v A i +   a +a e Gadav ++ +v
  KIR62246.1 157 AKLPVMV-ASIAEC--ARAAQEAGADAVCVANSV 187
                 3556665.444444..4556799*****998776 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 3.8e-06
                 HHHH-.SS-BEEES---SHHHHHHHHHTT-SEEEESHH CS
        ThiG 170 iieea.kvPvivDAGigspsdaaqamelGadavllnta 206
                 + ++a +vPvi   Gi ++ +a + + +Ga+av + ta
  KIR62246.1 223 LAAKAvDVPVIACGGIATADHALEYLSVGASAVQVGTA 260
                 334444*****************************998 PP

>> DUF561  Protein of unknown function (DUF561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.3     0.041        67      58      89 ..     155     185 ..     136     187 .. 0.76
   2 !   12.1   0.1   4.9e-05      0.08     178     233 ..     221     275 ..     213     284 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.041
      DUF561  58 svsniPiCvsaveakllleavkaGadlveiGn 89 
                  ++++P+ v+++  +    a+ aGad v + n
  KIR62246.1 155 VIAKLPVMVASIA-ECARAAQEAGADAVCVAN 185
                 5789999999995.56678999****998877 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4.9e-05
      DUF561 178 tyeiskkvslPvicasGlsdvtvpla.lslgasGiGigsavsklndeeemvallsei 233
                 ++  +k+v++Pvi+  G+++    l  ls+gas + +g a  +++  ++mv +++ +
  KIR62246.1 221 VWLAAKAVDVPVIACGGIATADHALEyLSVGASAVQVGTA--NFSRPTAMVDVVRGL 275
                 67789**************99999864799*******985..555666666666655 PP

>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.21   3.4e+02     124     169 ..     137     185 ..     134     187 .. 0.68
   2 ?   10.0   0.0   0.00025      0.41     134     169 ..     224     259 ..     212     262 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.21
                   SGGGHHHHCTSTTS...EEEEE..SS--S.HHHHHHHCTT.SSEEEE-- CS
  G3P_antiterm 124 PglvpkvikeikkelkipiiaG..GLiet.kedveealkaGaiavstsn 169
                   P+ + +++++++  ++ p+ia    ++ +  e  ++a +aGa+av++ n
    KIR62246.1 137 PAALFETVARVRAVTDKPVIAKlpVMVASiAECARAAQEAGADAVCVAN 185
                   6677777888888888888885224555413455677889999998776 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00025
                   STTS...EEEEESS--SHHHHHHHCTT.SSEEEE-- CS
  G3P_antiterm 134 ikkelkipiiaGGLietkedveealkaGaiavstsn 169
                     k++++p+ia G i t ++  e l+ Ga+av +++
    KIR62246.1 224 AAKAVDVPVIACGGIATADHALEYLSVGASAVQVGT 259
                   56789***************************8765 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.2      0.26   4.2e+02       3      18 ..     168     183 ..     164     190 .. 0.63
   2 ?    9.5   0.1   0.00031       0.5     143     182 ..     228     268 ..     218     273 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.26
                 HHHHHHHHHT-SEEEE CS
        NanE   3 amakaaeqaGavgiri 18 
                   a+aa++aGa ++ +
  KIR62246.1 168 ECARAAQEAGADAVCV 183
                 5677777777776643 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00031
                 TT--EEEES---SHHHHHHHHTT--SEEEE-HH.HH-HHHH CS
        NanE 143 aglkviaeGrintPekakkaieiGvdavvvGsa.itrleei 182
                  ++ via G i t ++a + + +G+ av vG+a   r++ +
  KIR62246.1 228 VDVPVIACGGIATADHALEYLSVGASAVQVGTAnFSRPTAM 268
                 5688***************************9845777665 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.29   4.8e+02     152     169 ..      91     108 ..      79     115 .. 0.81
   2 ?    0.6   0.0      0.19   3.1e+02     103     122 ..     163     183 ..     129     189 .. 0.62
   3 ?    6.8   0.2    0.0023       3.7     142     177 ..     221     257 ..     209     261 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.29
    TMP-TENI 152 PvvaiGGitlenvaevle 169
                  +v iGG  +++ ++v+e
  KIR62246.1  91 TIVSIGGHAPAEYEQVAE 108
                 5789*******9999986 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.19
    TMP-TENI 103 vhslee.aeeaealgadYigv 122
                 v s++e a++a+++gad ++v
  KIR62246.1 163 VASIAEcARAAQEAGADAVCV 183
                 444555555555666666555 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0023
    TMP-TENI 142 lkelaealeiPvvaiGGitle.nvaevleagadgvav 177
                 +  +a+a+ +Pv+a GGi ++ ++ e l  ga+ v v
  KIR62246.1 221 VWLAAKAVDVPVIACGGIATAdHALEYLSVGASAVQV 257
                 555678899*********7651556777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2190.78
//
Query:       KIR62247.1  [L=401]
Description: allantoate deiminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-27   97.2   0.7    1.3e-27   96.8   0.7    1.1  1  Peptidase_M20  Peptidase family M20/M25/M40
    1.4e-08   34.7   0.6    7.7e-08   32.3   0.1    2.1  2  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.7   1.5e-31   1.3e-27       2     206 ..      66     395 ..      65     396 .. 0.92

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 1.5e-31
                    EEEES-BSSTTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.....THHHHHHH....HHHT. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxx....xxxx. RF
  Peptidase_M20   2 lgsHlDvVpeeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.....gGakalle....glee. 87 
                    +gsHlD+Vp     +           G     Ga d++ gv+aal++++a + +g    ++ +++++++EEg+r     +G++ +++       + 
     KIR62247.1  66 TGSHLDSVP-----H-----------G-----GAYDGTVGVVAALAVAAA-ASAGRPRHRPWRFVAFAAEEGARfgqacNGSRIVAGltgaA--Dl 137
                    589******.....2...........7.....999999*********999.444433356************99999999997777766430..24 PP

                    ...............................TTCESEEEEEEEESSSBTCHSTETEEEE..................................... CS
                    ...............................xxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................... RF
  Peptidase_M20  88 ...............................rekvdavfelhieepgileagklaigvv..................................... 115
                                                    ++++a++elhie++++le  ++ +gvv                                     
     KIR62247.1 138 rqltdrtgttmaaamtecglapervetarwdPRDWRAFVELHIEQGTVLEHRRVPVGVVdtvsgstrlrvcltgvashtggtpmenrrdalaaaae 233
                    567777888999999999999999999999999*****************999999999************************************* PP

                    ........................................................................EEEEEEEEEESHEEECCHHHHHHH CS
                    ........................................................................xxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 116 ........................................................................kvevelleggapvtlndsplvkal 139
                                                                                            +veve+l + +pv+l+  ++++a+
     KIR62247.1 234 cvldcerlavaaadvntritvgaltvepgaitiipgrvvftvdvretdygrqraaahavgqrcrtvaarrgvDVEVEELADTPPVVLS-REVAAAA 328
                    **********************************************************************988999999999999999.999**** PP

                    HHHHHHHHTSCEEEEEESSSBHTHHHHTTT.EEEEEEESSG.GCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 140 aeaaeelfgekvelivsgpggtdarffagi.ptvmifgpgs.glaHspnEyvdledlekgikvlarlle 206
                    ++aa++l g+  e+ +sg +++d++ + ++ p+ ++f+p+  gl+Hsp E+   +++++g++vl +++ 
     KIR62247.1 329 RAAATAL-GLPAEVLASG-ASHDTQQISRLmPAGIVFVPSRgGLSHSPGEFSTADQIAAGAAVLLETMY 395
                    ***9998.*99*******.********8888*******9955**********************99875 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.1   8.6e-12   7.7e-08       1      82 [.      48     138 ..      48     164 .. 0.84
   2 ?    0.6   0.1     0.042   3.8e+02      30      53 ..     374     398 ..     332     401 .] 0.81

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 8.6e-12
                    EEEEEESTTCE..SEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHHGGCCS.SEEEEEEEESSCSG..............SSHHHH CS
  Peptidase_M28   1 Nviatlegkat..devlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaasgsrp.krgvrflffdaEEa..............gllGSk 79 
                    N i++l ++a+  +  +  g+H+Dsv+        GA D  +gv+a L +a +  a g rp +r  rf++f aEE               gl G+ 
     KIR62247.1  48 NTIGELAPDAEprPGAIGTGSHLDSVPH---G---GAYDGTVGVVAALAVAAAASA-G-RPrHRPWRFVAFAAEEGarfgqacngsrivaGLTGAA 135
                    8899999999987779***********5...7...9*****************998.5.788*************999999666666666666666 PP

                    HHH CS
  Peptidase_M28  80 afa 82 
                     + 
     KIR62247.1 136 DLR 138
                    655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.042
                    C.T---TTTTHHHHHHHHHHHHHCH CS
  Peptidase_M28  30 p.ifvGAdDnAsgvaalLelarvla 53 
                    p  f  Ad  A+g+a+lLe++  l 
     KIR62247.1 374 PgEFSTADQIAAGAAVLLETMYRLD 398
                    4557788889*********998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2822.93
//
Query:       KIR62248.1  [L=275]
Description: hypothetical protein TK50_29665 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-09   37.9   2.8    1.2e-09   37.9   2.8    1.7  2  DHODB_Fe-S_bind  Iron-sulfur cluster binding domain of dihydr
     0.0014   18.9   0.0     0.0023   18.3   0.0    1.3  1  FAD_binding_6    Oxidoreductase FAD-binding domain
  ------ inclusion threshold ------
      0.077   13.2   0.1        6.1    7.1   0.1    2.4  2  FAD_binding_9    Siderophore-interacting FAD-binding domain


Domain annotation for each model (and alignments):
>> DHODB_Fe-S_bind  Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.4       1.2   7.2e+03       7      11 ..     126     130 ..     126     131 .. 0.89
   2 !   37.9   2.8   1.9e-13   1.2e-09       1      37 [.     230     266 ..     230     269 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.2
                      SSSSS CS
  DHODB_Fe-S_bind   7 GvGaC 11 
                      G+G+C
       KIR62248.1 126 GIGVC 130
                      99**9 PP

  == domain 2  score: 37.9 bits;  conditional E-value: 1.9e-13
                      ----SSSSSSS-TTEEEETTCTT.CEEETTTT-CEEE CS
  DHODB_Fe-S_bind   1 eerMaCGvGaClgCvvktkggdggeykrvCkdGPvFd 37 
                      e++MaCG+G C gC+++   + g e   vC dGPvF 
       KIR62248.1 230 EAHMACGLGYCHGCALPRPADPGREGPLVCFDGPVFA 266
                      89****************999999************7 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.8e-07    0.0023      18      96 ..      31     109 ..      17     111 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.8e-07
                    EEEESTTTS-----TT-EEEEEEC.ETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHCS-TT-EEEEEEEE-S CS
  FAD_binding_6  18 rfklpsekqklglpvGqhvflrlk.ikgeaviRsYtpissenekGelellvkvypgGkmsqaLdelkigdtleikGPlGk 96 
                    r+ l ++       +Gq+v+l+++ + ge  i+   p++ +  +   ++ v    +G+ ++aL+++++gd+l ++GPlG+
     KIR62248.1  31 RLVLRAARVAATAQAGQFVMLSVPqAAGE-LIQLPRPMAVHRRRPGGDIEVVYNVQGRGTEALSRVRPGDSLLVTGPLGR 109
                    445555555567789*********66666.66666666666665555666666789**********************97 PP

>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1     0.001       6.1      92     119 ..      29      56 ..      24      58 .. 0.89
   2 ?    2.9   0.0      0.02   1.2e+02      90     119 ..      80     108 ..      65     110 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.001
  FAD_binding_9  92 lHgdegpaarwAaqAqpGdelaivgPgg 119
                    +H+    aar Aa+Aq+G+ + +  P++
     KIR62248.1  29 IHRLVLRAARVAATAQAGQFVMLSVPQA 56 
                    6888889*****************9987 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.02
  FAD_binding_9  90 fvlHgdegpaarwAaqAqpGdelaivgPgg 119
                     v  + +g +++  ++++pGd l ++gP g
     KIR62248.1  80 VVY-NVQGRGTEALSRVRPGDSLLVTGPLG 108
                    443.4447788878899***********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2138.36
//
Query:       KIR62249.1  [L=1183]
Description: B12-dependent methionine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.5e-98  327.2   0.0    1.7e-97  326.1   0.0    1.5  2  Met_synt_B12    Vitamin B12 dependent methionine synthase, ac
    1.2e-74  251.5   0.0      2e-74  250.8   0.0    1.4  1  S-methyl_trans  Homocysteine S-methyltransferase
    5.9e-51  173.5   1.5    3.8e-50  170.8   0.2    2.4  2  Pterin_bind     Pterin binding enzyme
    1.2e-25   89.8   1.0    3.7e-25   88.2   0.2    2.4  2  B12-binding_2   B12 binding domain
    2.1e-20   73.0   2.7    2.3e-18   66.4   0.9    2.9  2  B12-binding     B12 binding domain


Domain annotation for each model (and alignments):
>> Met_synt_B12  Vitamin B12 dependent methionine synthase, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.5   5.4e+03      84     109 ..     858     883 ..     832     889 .. 0.70
   2 !  326.1   0.0  4.9e-101   1.7e-97       2     272 ..     912    1164 ..     911    1165 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.5
  Met_synt_B12  84 sevlatlhtLRqqeekeeeepnlcLa 109
                   +++ a+ + LR+q+++++ +p l La
    KIR62249.1 858 TANRAEQERLREQHANRHAQPLLTLA 883
                   33456788999999999999988887 PP

  == domain 2  score: 326.1 bits;  conditional E-value: 4.9e-101
  Met_synt_B12    2 leelveyidWtpffqawelkgkypkiledeevgeeakklfkdaqallkriieekllkakavvglfpAnsegddievytdesrsevlatlhtLRqq 96  
                    l+el+e+idW++ f awelkgk+p+il+++     a++l++da++ll+ ii++ +l+a++++g++ A++egddi++  d+    + ++l++LRqq
    KIR62249.1  912 LTELREMIDWQFLFLAWELKGKFPAILDQP----VARELYDDANTLLDAIIADGSLRARGAYGFWTAHAEGDDIVL--DD----AGVRLPMLRQQ 996 
                    899*************************99....799***************************************..33....3689******* PP

  Met_synt_B12   97 eekeeeepnlcLaDfvapkesgikdyiGlFavtagigieelaekfeaekddYssilvkaladrLaeAfaellhekvrkelWgyakdeklsneeli 191 
                    ++k ++++n+cLaD+vap+     d++G Fav++ +g+eela+++eae+ddY++i+vkaladrLaeAfae+lh + r++ W +++d +    +l+
    KIR62249.1  997 TAKPTGRANRCLADYVAPA----GDHLGGFAVAV-HGAEELAARYEAEHDDYRAIMVKALADRLAEAFAEHLHLRARRD-W-FEPDAAPALADLH 1084
                    ******************3....59*********.9******************************************8.6.899********** PP

  Met_synt_B12  192 kekyqgirpApGYpacpdhtekktlfelldaeekigieLteslamvPaasvsGlyfahpearYfavgkigkdqvedyakrk 272 
                    +e+++girpA GYpa pdh+ek++lf+ll ae+ +gi Ltes+am+Paa+vsGl+fahp++rYf+vg+ig+dq edya+r+
    KIR62249.1 1085 AERFRGIRPALGYPASPDHSEKRDLFDLLGAET-LGIGLTESYAMTPAAAVSGLIFAHPDSRYFTVGRIGRDQAEDYAARR 1164
                    *********************************.**********************************************8 PP

>> S-methyl_trans  Homocysteine S-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.8   0.0   5.7e-78     2e-74       1     268 []       6     305 ..       6     305 .. 0.87

  Alignments for each domain:
  == domain 1  score: 250.8 bits;  conditional E-value: 5.7e-78
                     EEB---SHHHHHHT----ST.TH..............HCCHH..H-HHHHHHHHHHHHHHT-SEEE-TTTT--GG...T--HHHHH.HHHHHHHH CS
  S-methyl_trans   1 lilDGgmgteLerradlsee.lw..............saell..trpelikeihrdyleaGadiieTnTyqaskik..gleeeeeveelnraave 76 
                     ++lDG+ gt+L+   +ls + ++                +ll  trp+li ++hr+yl+aGadi +TnT+ a++i   ++  e+ ++e+n ++++
      KIR62249.1   6 VVLDGAWGTMLQGA-KLSPAdYRgdligddhprdvtgDPDLLnlTRPDLILDVHRQYLAAGADITTTNTFTATSIGqaDYGLEALAREMNVRGAQ 99 
                     69*********985.666656566677888888888888898777****************************88766344559*********** PP

                     HHHHHHHHH....HEEEEE--HHHHCTS--...-.....--HHHHHHHHHHHHHHHHHCT-SEEEEEEE--HHHHHHHHHHHT.T...--EEEEE CS
  S-methyl_trans  77 lareaadeaaaplfvagsvGpygatlsdgy...d..l..lsfeelveahreqiralleagvDlllietipdlleakaavellaae...lpvwisf 161
                     lar+aadea   +fvagsvGp++ tls ++   d  +  ++f+++++a++eq++al+e+gvDlll+eti+d+l+akaa+ + ++    lp+wis+
      KIR62249.1 100 LARQAADEA-GGRFVAGSVGPLNVTLSLSPrveDpaYraVTFDDVKAAYAEQMAALTEGGVDLLLVETIFDTLNAKAAIAAAREAaphLPLWISV 193
                     ********8.5788**************65343255346***************************************77555546779****** PP

                     -ECCT...TETTS-BHHH.HHHHHCT-TEEEEEEES--.GGGHHHHHHHHHTT--S-.EEEE--.....-.S-----------....-HHHTT.E CS
  S-methyl_trans 162 tikdes..tlrsGetleeavaalaaatqplavgvNCak.peelepllkelksetalpavivypn.....sagevydltpeewaesaeewleag.a 247
                     t+ d s  tl sG+t+e++++++a+a +pl vgvNCa  + e++p+++el s+ a + v+++pn     ++g  yd+tpee  + + +++ +g +
      KIR62249.1 194 TVVDLSgrTL-SGQTVEAFWRSVAHA-EPLVVGVNCALgAAEMRPHVAEL-SRLAGTYVAAHPNaglpnAFG-GYDQTPEEIGALLGGFAGDGlV 284
                     **99987447.**************9.77*********************.88886669*****66653245.5********************* PP

                     EEE---TT--HHHHHHHHH.. CS
  S-methyl_trans 248 niiGGCCgttpehIraiaeav 268
                     ni+GGCCgttp hI+ ia+av
      KIR62249.1 285 NIVGGCCGTTPPHIAGIAAAV 305
                     *****************9986 PP

>> Pterin_bind  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.8   0.2   1.1e-53   3.8e-50       1     244 []     340     578 ..     340     578 .. 0.96
   2 ?    0.9   0.1     0.082   2.9e+02      28      60 ..     768     800 ..     760     807 .. 0.86

  Alignments for each domain:
  == domain 1  score: 170.8 bits;  conditional E-value: 1.1e-53
                  EEEEETTTTTCHCCHHC.THHHHHHHHHHHHHHTT-SEEEEESS-TSTT--CCHHHHHHHHHHHHHHHHHHHCTSEEEEE-S-HHHHHHHHHT..TSE CS
  Pterin_bind   1 mgilNvtpdsfsdggkf.edldkalaqarkmveeGAdilDiggestrPgaervdeeeelervvpvlealrdeadvpisiDttkaevaeaAlka..gad 95 
                  ++++Nvt++  +++++   d + a+++a ++v+ GA++lD+++++       +d+e++++ ++++++ +++ a++pi+iD+++++v+ea+lk+  g+ 
   KIR62249.1 340 GERTNVTGSARFRRLIEaDDHQGAVDVAVEQVRGGANLLDVNMDAD-----LLDSERAMTTFLNLIATEPEVARIPIMIDSSRWSVLEAGLKCvqGKG 432
                  699**************99*************************99.....****************999999************************* PP

                  EEEETTTTS...SSTTHHHHHHHHT-EEEEESECSSTTTHCCCC.CCCSSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTS..STTHHHHHHHHH CS
  Pterin_bind  96 ivNdvsgee...rdpkmlelvaeagaavvvmhmrgtpktmqeee.gqyedvveeveaflearveaaeeaGvaperillDpgigf..gkteehnlellr 187
                  +vN++s++e    + + +++++++ga vvvm+++         e gq+++++++v+++ +a+   + +aG+ape+i++Dp+++   ++ +ehn ++ +
   KIR62249.1 433 VVNSISLKEgeePFLAQARTIRDYGAGVVVMAFD---------EqGQADTTERKVQICGRAYDLLVGKAGFAPEDIIFDPNVLAvaTGIAEHNGYAKA 521
                  *******99877788999****************.........448************************************9999************ PP

                  THHHHHHTTS....SEBEEEGTTGHHHHHHHCTTCHGHHHHHHHHHHHHHHHTT-SEEEES CS
  Pterin_bind 188 rldelreale....vpvllGvSrksflgrllelgkaeeRdagtaaflalaaaaGadivrVh 244
                  ++d+l  ++     ++++ G+S+ sf +r+++      R+a+++afl++a++aG+d+ +V+
   KIR62249.1 522 FIDALPLIKArcpgARTSGGISNLSFAFRGND----VVREAMHSAFLFHAVRAGLDMGIVN 578
                  *****777779999***************973....48*********************97 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.082
                  HHHHHTT-SEEEEESS-TSTT--CCHHHHHHHH CS
  Pterin_bind  28 rkmveeGAdilDiggestrPgaervdeeeeler 60 
                     v+eGAd + ++g  t +  e+v ++ e++r
   KIR62249.1 768 DTAVAEGADAIGLSGLITPSLDEMVAVAGEMQR 800
                  5689**************66669********98 PP

>> B12-binding_2  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.2     1e-28   3.7e-25       1      75 []     636     710 ..     636     710 .. 0.95
   2 ?   -2.8   0.0       2.5   8.9e+03      18      33 ..     764     779 ..     762     793 .. 0.69

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 1e-28
  B12-binding_2   1 laerlhwaivhgdkegieelidealaqgsaavdvlndvllpamkeVGdlfgagelflpqvllsaevmkkavahLe 75 
                    +aerl++a+vhg  + +e++++ea+    +++dv++++l+++mk+VGdlfgag++flpqv++sa+vmk+ va+Le
     KIR62249.1 636 VAERLTHALVHGIVDHVEADTEEARLLFDRPLDVIEGPLMDGMKVVGDLFGAGKMFLPQVVKSARVMKRSVAYLE 710
                    689**********************65566*******************************************97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.5
  B12-binding_2  18 eelidealaqgsaavd 33 
                     +++d+a+a+g +a  
     KIR62249.1 764 ARILDTAVAEGADAIG 779
                    6788999988877654 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0057        20      18      98 ..     175     271 ..     159     282 .. 0.75
   2 !   66.4   0.9   6.5e-22   2.3e-18       2      92 ..     725     815 ..     724     832 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0057
  B12-binding  18 avlaaalrdagf.....eVqllganven......edivaairaekpdvvglSal..ltsqleavkelvel.....lkrirprvkvvvGGahpsldpee 97 
                  a++aaa ++a +     +V+++++   +      e++ ++++  +p vvg+ +        ++v+el +l     ++  +++++ ++GG     +pee
   KIR62249.1 175 AAIAAAREAAPHlplwiSVTVVDLSGRTlsgqtvEAFWRSVAHAEPLVVGVNCAlgAAEMRPHVAELSRLagtyvAAHPNAGLPNAFGG--YDQTPEE 270
                  45555555566678888777777777767778889******************966455677777777777779988889999999999..5588887 PP

  B12-binding  98 t 98 
                  +
   KIR62249.1 271 I 271
                  4 PP

  == domain 2  score: 66.4 bits;  conditional E-value: 6.5e-22
  B12-binding   2 kvllatvggdlhplGlavlaaalrdagfeVqllganvenedivaairaekpdvvglSalltsqleavkelvellkrirprvkvvvGGahps 92 
                  kv+latv+gd+h++G++++  +l  +++eV++lg+ v++++i++ + ae +d++glS l+t +l+++ +++ + +r++ rv++++GGa  s
   KIR62249.1 725 KVVLATVKGDVHDIGKNIVGVVLGCNNYEVVDLGVMVPAARILDTAVAEGADAIGLSGLITPSLDEMVAVAGEMQRRGLRVPLLIGGATTS 815
                  89*************************************************************************************7643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.25s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 8279.91
//
Query:       KIR62250.1  [L=282]
Description: esterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-22   77.8   0.0    2.3e-20   73.3   0.0    2.0  1  Abhydrolase_1  alpha/beta hydrolase fold
    3.6e-07   29.7   0.1    1.8e-06   27.4   0.1    1.9  1  Hydrolase_4    Serine aminopeptidase, S33
    4.5e-07   29.9   0.2    1.3e-06   28.4   0.1    1.7  2  Abhydrolase_4  TAP-like protein
     0.0051   16.7   0.2       0.68    9.8   0.0    2.5  2  Ser_hydrolase  Serine hydrolase
  ------ inclusion threshold ------
       0.09   12.2   0.0        2.4    7.6   0.0    2.1  2  Peptidase_S9   Prolyl oligopeptidase family
       0.28   11.5   0.1       0.28   11.5   0.1    3.1  4  RsdA_SigD_bd   Anti-sigma-D factor RsdA to sigma factor bindi


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   7.7e-24   2.3e-20       1     251 [.      24     259 ..      24     262 .. 0.82

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 7.7e-24
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeype 96 
                    p+l+++ G  +s+  w e +l +aLa+ +++v+ +D+r  g+S+ + ++  d y++ ++a+d  r+ldalg+d+ ++vG S+GG++   +++++pe
     KIR62250.1  24 PALLLVMGANASGLTWPE-ALLDALAR-RHRVVRYDHRDTGRSTWSFDE--DPYPLTALAADAVRVLDALGIDRAHMVGMSLGGTLTQLLLLDHPE 115
                    78999******9999999.8999***9.***************999999..9******************************************** PP

                    GEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHH CS
  Abhydrolase_1  97 rVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksieqw 192
                    rV+  +l+g+ +p      + + +a+ +   ++++ ++  r ++  +  ++ + l+   ++            f+ ++++++    + +++  e +
     KIR62250.1 116 RVATATLVGT-TPLDGGPADGPGIAPELLALWETMLEPRDRDAELAWRVRHWRVLNGGESP------------FDAEEFRRREERIMAHAGRHENP 198
                    **********.55555555556677788888888888888888777777777777777665............55555555555555555555555 PP

                    HHCCHHHHHHHHHC..THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSS CS
  Abhydrolase_1 193 pttdsaklllrlre..lknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHl 251
                    +++++a   + +r   l +v+ p+lv+ +  Dp++   + + la ll ++rlv++++ gH 
     KIR62250.1 199 AAHARADQGGLDRAgeLAAVTTPVLVVDSPADPVAGTASARHLATLLGNARLVTVPGLGHA 259
                    5555555555555556777888*****9999****99999***9999999****9999996 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1     6e-10   1.8e-06      23     234 ..      43     260 ..      20     262 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 6e-10
  Hydrolase_4  23 laeaLaaqGfavyalDhrGhGrse.gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsa..Palkikakl 117
                  l +aLa++   v+ +Dhr  Grs      +  +++ + +D+  +++++       +  ++G S+GG++++l+ll++p++va + l++  P+ + +a+ 
   KIR62250.1  43 LLDALARR-HRVVRYDHRDTGRSTwSFDEDPYPLTALAADAVRVLDALG----IDRAHMVGMSLGGTLTQLLLLDHPERVATATLVGttPLDGGPADG 135
                  66666665.5799**********987777888999******99999998....556779*******************99965555511555555444 PP

  Hydrolase_4 118 .k.appllklllkllgkllpklqv.............snnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrleeraakitlPllllhGe 200
                     ap+ll+l+ ++l +  ++ ++             +++ +a+   r +e++ a++     h+++ ++  +    +++r+  + a++t+P+l++ + 
   KIR62250.1 136 pGiAPELLALWETMLEPRDRDAELawrvrhwrvlnggESPFDAEEFRRREERIMAHAG---RHENPAAHA-RADQGGLDRAG-ELAAVTTPVLVVDSP 228
                  5468889999888988888888888888977666555444555555554444443333...233333332.22223444444.445588********* PP

  Hydrolase_4 201 aDkvvdpeasrelyerlgskdktlklypglyHel 234
                  aD+v   + +r+l+  lg  + +l + pgl H l
   KIR62250.1 229 ADPVAGTASARHLATLLG--NARLVTVPGLGHAL 260
                  ******************..7***********86 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.4   4.2e+03      35      66 ..      24      53 ..      13      67 .. 0.59
   2 !   28.4   0.1   4.5e-10   1.3e-06      29      74 ..     214     259 ..     198     270 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.4
  Abhydrolase_4 35 apvLllqnerDpaTPyegakklakalggavlv 66
                   +  Ll+ +   +a ++ + ++l +al + + v
     KIR62250.1 24 PALLLVMGA--NASGLTWPEALLDALARRHRV 53
                   444444443..467777777777777774333 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 4.5e-10
  Abhydrolase_4  29 stakgaapvLllqnerDpaTPyegakklakalggavlvtvegeGHg 74 
                    + a++++pvL++++  Dp+ ++++a++la  lg+a+lvtv g GH 
     KIR62250.1 214 ELAAVTTPVLVVDSPADPVAGTASARHLATLLGNARLVTVPGLGHA 259
                    4456789**************************************7 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0099        30       3      89 ..      28     125 ..      26     137 .. 0.62
   2 !    9.8   0.0   0.00023      0.68     113     153 ..     218     259 ..     181     271 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0099
                    EE--TT--TTTTCHHHHHHHHCCTEEEEEC--TS--HHHHHHHHH.HHHHC-STT............EEEEEETCHHHHHHHHHHHTTSSSEEEEE CS
  Ser_hydrolase   3 ivpGlqgsgpeHWqsrwekklpaarrveqadwlkPdledWvaale.aaveaaeek............vvlvAHSlgclavlhaaelqlakkvagal 85 
                    +v G ++sg + W   + ++l  ++rv   d  +  +++W    +   ++a+ ++            + +v  Slg  ++  ++ l ++++va a 
     KIR62250.1  28 LVMGANASGLT-WPEALLDALARRHRVVRYDHRDTGRSTWSFDEDpYPLTALAADavrvldalgidrAHMVGMSLGGTLTQLLL-LDHPERVATAT 121
                    55666665543.666666666666666666666666666643222011222222222333334444578899999999888888.99999999999 PP

                    EET- CS
  Ser_hydrolase  86 LVap 89 
                    LV  
     KIR62250.1 122 LVGT 125
                    9975 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00023
                    HCCHCEEEEETTBTTC-HHHHHHHHHHCT.-EEEEETT-TTS CS
  Ser_hydrolase 113 lpfpslvvaSenDpyvsfeeaeelaeawg.aelvdlgeaGHi 153
                       p lvv S  Dp+  ++ a++la+ +g a+lv ++  GH 
     KIR62250.1 218 VTTPVLVVDSPADPVAGTASARHLATLLGnARLVTVPGLGHA 259
                    455679**********************85789*******96 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00079       2.4      59      88 ..      87     116 ..      76     124 .. 0.80
   2 ?    2.4   0.0      0.03        90     136     187 ..     211     259 ..     172     272 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00079
                   TS--GGGEEEEEETHHHHHHHHHHHH-GGG CS
  Peptidase_S9  59 gyvdserlaitGgSyGGyltgaalnqrpdl 88 
                   +    +r  + G S GG+lt  +l ++p++
    KIR62250.1  87 DALGIDRAHMVGMSLGGTLTQLLLLDHPER 116
                   5556689999******************97 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.03
                   CGGG--.---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SS CS
  Peptidase_S9 136 pldnvk.aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHg 187
                    + +++ +++p+L++ + aD     a+a +l++ L +    ++l++ p+ gH 
    KIR62250.1 211 RAGELAaVTTPVLVVDSPADPVAGTASARHLATLLGN----ARLVTVPGLGHA 259
                   333333599***********99988888888888765....788888888885 PP

>> RsdA_SigD_bd  Anti-sigma-D factor RsdA to sigma factor binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   9.5e-05      0.28      10      28 ..      42      60 ..      40      81 .. 0.77
   2 ?   -0.9   0.1      0.68     2e+03      10      20 ..      84      94 ..      74     110 .. 0.69
   3 ?   -4.1   0.8         6   1.8e+04      27      39 ..     155     167 ..     153     167 .. 0.65
   4 ?   -1.3   0.0      0.92   2.7e+03      28      37 ..     238     247 ..     229     249 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.5e-05
                  HHHHHHHTT-----SSHHH CS
  RsdA_SigD_bd 10 aLLDALAgrgpvdtddpde 28
                  aLLDALA+r++v   d+++
    KIR62250.1 42 ALLDALARRHRVVRYDHRD 60
                  8***********5555443 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.68
                  HHHHHHHTT-- CS
  RsdA_SigD_bd 10 aLLDALAgrgp 20
                  + LDAL+ +++
    KIR62250.1 84 RVLDALGIDRA 94
                  56899987765 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 6
                   HHHHHHHHHHHHH CS
  RsdA_SigD_bd  27 deyeLAaLLadWR 39 
                   +++eLA     WR
    KIR62250.1 155 RDAELAWRVRHWR 167
                   5677776666666 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.92
                   HHHHHHHHHH CS
  RsdA_SigD_bd  28 eyeLAaLLad 37 
                    + LA+LL +
    KIR62250.1 238 ARHLATLLGN 247
                   5689***976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 1825.31
//
Query:       KIR62251.1  [L=100]
Description: hypothetical protein TK50_29765 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.26   11.0   0.0       0.28   10.9   0.0    1.1  1  P53       P53 DNA-binding domain


Domain annotation for each model (and alignments):
>> P53  P53 DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.5e-05      0.28       4      49 ..      10      55 ..       8      84 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.5e-05
                -B-TTTTEEEEESS.BSSSTTTSEEEETTTTEEEEETTSEEEEEEE CS
         P53  4 sfpgslnfkvelseqeketkkkkwlyseklnklyvkmnksvpvkfs 49
                s+ g++ f++ ++++e +++++ +++se l ++++++ ++++ +f 
  KIR62251.1 10 SWVGQFLFQLVVQRNEASQHGQAFAWSEFLPQFFASTFENWQSEFL 55
                578999******999************************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 702.94
//
Query:       KIR62252.1  [L=657]
Description: amino acid transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       970  (0.0541023); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 4214.07
//
Query:       KIR62253.1  [L=180]
Description: hypothetical protein TK50_29890 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-08   32.3   0.0    9.1e-08   32.0   0.0    1.1  1  Ketoacyl-synt_2  Beta-ketoacyl synthase, N-terminal domain
  ------ inclusion threshold ------
      0.013   15.1   0.0      0.021   14.4   0.0    1.3  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> Ketoacyl-synt_2  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0     1e-11   9.1e-08      50     167 ..      56     178 ..      49     180 .] 0.91

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1e-11
  Ketoacyl-synt_2  50 nlpvVfaSrhGElertlellkdlaageplSPtaFslSVHNaaaGlfsiarknkaestalaAgedtleaallEAaallaeg.aekVLlvvadepl 142
                        +vV +S  G+ +   ++   +aag    P+ F +SV N++aG ++  ++   ++  la + d l+ +  EA +ll++g a++ Ll++++++ 
       KIR62253.1  56 RTAVVLVSAAGDRASADHVHATVAAGGRPGPLFFFQSVPNSVAGHVAARWGLGGPVVCLAPTGDPLAEGTAEAELLLSDGdADEALLILIEQAP 149
                      56899**************************************************************************************999 PP

  Ketoacyl-synt_2 143 peaYqefede....eelpyAlalllsagd 167
                      ++a + +++      + + A+a+ll +gd
       KIR62253.1 150 DDAGAGVQAAapgsLPGTAAVAVLLGRGD 178
                      98877666666777778889999998877 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.3e-06     0.021     111     170 ..      53     113 ..      31     116 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.3e-06
                    TTGGEEEEEEESSTHH..HHHHHHHHHTTGGGSCT.THHHHHSTTHHHHHHHHHHT--SSEEE CS
  ketoacyl-synt 111 dgsrvgvfiGvgagdy..aalaaldedgsevkasp.kavgavlanviagrisyalglrGpsvt 170
                     g r++v++ ++agd   a+++  + +    +  p ++ ++ ++n +ag+++ ++gl Gp+v+
     KIR62253.1  53 AGGRTAVVLVSAAGDRasADHVHATVAA-GGRPGPlFFFQS-VPNSVAGHVAARWGLGGPVVC 113
                    5567899999999977543333333333.356677678888.******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       188  (0.0104858); expected 358.6 (0.02)
Passed bias filter:                      119  (0.00663729); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1328.32
//
Query:       KIR62254.1  [L=227]
Description: GDSL family lipase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-14   55.4   1.1    1.2e-14   55.1   1.1    1.1  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
     0.0011   19.0   0.0     0.0012   18.8   0.0    1.2  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   1.1   1.3e-18   1.2e-14       1     161 [.      33     195 ..      33     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 1.3e-18
                    EEESHHHHTCTTBCCHCHHCCCCCCCHHHTT.....-EEEEE.EEHCCH-H..HHHHHHHHCTGGG-TSEEEEE--CCCCCTT--HHHHHHH..HH CS
  Lipase_GDSL_2   1 alGDSiTaGygadgggrsypaylarllaarl.....gldvvnnlgvsGattallrllerlrdllrlkpdlvtiliGtNDlgrgvpaaaaaandnle 91 
                    +lGDS ++G   +  g+++  + a+++aa+l     gl++ n lg  G +  +   + +l  + +++pdl ++  G+ND++r + +a+a+ ++ l+
     KIR62254.1  33 VLGDSVAEGLCEPVDGYPDVQW-ADRIAAELdaarpGLAYLN-LGLRGLRA-HEVRATQLAPAVEFAPDLALVVCGGNDAFRSAYDADAVDAE-LA 124
                    69*******9999889999999.9999999999888888887.*******8.7777888889*****************99999999988886.** PP

                    HHHHHHCCC...GEEE..CEEEEE-TTT-TTSTCC.HHHHHHHHHHHHHHHHHHCT-EEE-HHHHHHHCCCCC CS
  Lipase_GDSL_2  92 elidalraaapgaril..vlgplpptpeaaadare.lnaviaaynealrevaaeegvpfvDlhdaladsgerl 161
                    ++++ l+aa  ga ++  ++  +   p  +a+ re l ++ +++++  r++ ++ g   v l d+ a  + +l
     KIR62254.1 125 AMVTGLQAA--GADVVtvGMFDVSHSPAVPARLREgLGERMRRLAAHTRALGERLGTLHVHLTDHPAVADPTL 195
                    *********..77777336666666677777777788899**************9999999955555554333 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.4e-07    0.0012       2     130 ..      32     147 ..      31     214 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.4e-07
                  EEEESHHHHTT........THHHHHHHCCCCEECCCTTC.GCEEEEEEECTTHHHHHHHCCHECTTTECHHHHHCTTSEEEEE--CTCC-EECSSCTT CS
                  xxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL   2 vafGDSltdGd........gaatlntiqlktpknlnefdlaldrianignkgasdnelqqllnkyplkseqlkalhpdlviislGtNDsnlgkkstda 91 
                  v++GDS  +G+         +  ++ i  + +  ++     ++ + n+g +g   +e + ++        ++ ++ pdl ++  G+ND         +
   KIR62254.1  32 VVLGDSVAEGLcepvdgypDVQWADRIAAELDAARP-----GLAYLNLGLRGLRAHEVRATQ------LAPAVEFAPDLALVVCGGNDA-------FR 111
                  89*******997777655544444444444444444.....457888888888888888888......67889999*************.......77 PP

                  TCEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  92 akkeaeeyiknlreaikelkeegapkaivvlvsppglgp 130
                    ++a+++ + l  ++  l ++g   a vv v++ +++ 
   KIR62254.1 112 SAYDADAVDAELAAMVTGLQAAG---ADVVTVGMFDVSH 147
                  88999999999999999888666...5566665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1680.50
//
Query:       KIR62255.1  [L=416]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-31  110.0  55.6    5.6e-19   68.3  24.2    2.0  2  MFS_1       Major Facilitator Superfamily
    4.4e-24   84.8  38.6    6.3e-24   84.3  38.6    1.1  1  MFS_3       Transmembrane secretion effector
      0.005   15.8   1.2      0.005   15.8   1.2    4.1  4  Sugar_tr    Sugar (and other) transporter
  ------ inclusion threshold ------
      0.013   14.3  14.0      0.019   13.8   3.5    3.0  2  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3  24.2   1.2e-22   5.6e-19       7     239 ..      21     252 ..      15     255 .. 0.87
   2 !   48.2  23.7   1.6e-16   7.2e-13      30     176 ..     253     399 ..     251     415 .. 0.85

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 1.2e-22
       MFS_1   7 lsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllvlrvlqGlgagalf 103
                 +s l++ i  +a+p+++ ++   sp+ +g+++++ +l ++++s ++ +++drfG rr+ ++  +++a+++++ +++   ++ +l++l +++G   g++ 
  KIR62255.1  21 ISNLGSRISVIAIPWLVLTTT-GSPAKMGIVAAAEFLPYMLSSSLATPWADRFGVRRTSIVVDAASAAAVAVVAMTpwLGFGALVALVAVAGGLRGIGD 118
                 6778899999****6444444.5**********************************99999999999944444422366777999999999999**** PP

       MFS_1 104 pagaaliadwfpk..eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpaw 200
                  + +++++  + +   +  r ++ + + +   +++g+++ggll++++g + + +i a+ ++l+++l++ll+ ++p + ++ +p+e       ++l++++
  KIR62255.1 119 RVKHVMFRPAAQRagVQLIRLTSAYDGLARGVTLFGAVIGGLLIDWVGVTRAIWIDAGTFALCALLVGLLV-RPPAADAPAAPRES----YFRALRTGF 212
                 ******9999998556***********************************************99755555.78888888888888....88888888* PP

       MFS_1 201 kallkdpvlw.illialllfffgfsglltllplylqevlg 239
                  +l++d+vl+ +ll++++l++++ + + +++p+++++vlg
  KIR62255.1 213 AYLRTDRVLLaMLLVVSALNMMAAANTAVWIPVWVRDVLG 252
                 *********9999*******999999********999998 PP

  == domain 2  score: 48.2 bits;  conditional E-value: 1.6e-16
       MFS_1  30 spseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalg.lllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigl 125
                 +p+ +gl+l+++++ga+++++++  ++ r+ +r  v+ +g++++++  ll +++ + +  ++lv+ +l+G+g +a++p+ +a + + +p+  ++r++g+
  KIR62255.1 253 DPAGFGLVLGVFGAGALLGNVVFTMVGPRL-PRTlVFAVGAAMSGAPrLLTMAV-TDHLvVVLVVTFLSGIGIAAVNPLLGATLYERVPDALQTRVLGI 349
                 67889*************************.6666************6666664.77777*************************************** PP

       MFS_1 126 lsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                 +++ + +G  +g+llgg+ ++ lg   + +++a++++++ v + ll    +
  KIR62255.1 350 AGSLAFVGLPVGALLGGWSVAVLGLKPALLVMAVLCAVLTV-GPLLAGPLR 399
                 ***************************************99.333332222 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3  38.6   1.4e-27   6.3e-24      15     386 ..      15     387 ..       8     409 .. 0.85

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 1.4e-27
       MFS_3  15 iWiaslvsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllalt.ll 112
                 + +a l+snlG+ i  +a+ Wl+ + + sp+++ +v aa  LP +l s la   aD f  R+  ++v +  a++ ++++++  lg+ + ++l+a++  l
  KIR62255.1  15 LVAADLISNLGSRISVIAIPWLVLTTTGSPAKMGIVAAAEFLPYMLSSSLATPWADRFGVRRTSIVVDAASAAAVAVVAMTPWLGFGALVALVAVAgGL 113
                 66899***************************************************************999999999999999***9999998875268 PP

       MFS_3 113 igiGaalndPaWqAsv.gelvkrrdvpaAvaLnsvginiaRsv...GPAlgGvlvaavGaalafavna..lsylalivallrwkrevrksslprEklle 205
                  giG  +++  ++ +     v+       + L+s    +aR v   G  +gG+l+ +vG + a  ++a  ++  al+v ll   +++ +   prE+ ++
  KIR62255.1 114 RGIGDRVKHVMFRPAAqRAGVQL------IRLTSAYDGLARGVtlfGAVIGGLLIDWVGVTRAIWIDAgtFALCALLVGLLVRPPAADAPAAPRESYFR 206
                 99999998877764430333444......44444444455543333999***********9998887622566789999******************** PP

       MFS_3 206 alraglRftaasreikavlvRaalFglsasavlaL.LPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvll.aavalAlvllsla 302
                 alr g+ + ++ r + a+l+   +  ++a+a  a+ +P+ +rd l gd++ +G++lg +G+GA+lg ++ +++  rl    + ++ aa+  A  ll++a
  KIR62255.1 207 ALRTGFAYLRTDRVLLAMLLVVSALNMMAAANTAVwIPVWVRDVL-GDPAGFGLVLGVFGAGALLGNVVFTMVGPRLPRTLVFAVgAAMSGAPRLLTMA 304
                 **************98888777777766666666438****9987.89*****************************99877655277888999***** PP

       MFS_3 303 lasslwvavlvlllgGaaWitalstlnvavqlavPrWvvgRalavYltvlaGglaaGsllWGavaealsvtlaLlaaaaallla 386
                 ++++l+v+++v  l+G +  ++   l ++    vP+ +++R+l +   + + gl  G+ll G  +  l+++ aLl+ a++   +
  KIR62255.1 305 VTDHLVVVLVVTFLSGIGIAAVNPLLGATLYERVPDALQTRVLGIAGSLAFVGLPVGALLGGWSVAVLGLKPALLVMAVLCA-V 387
                 ******************999999999***********************************************99876432.2 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   1.5    0.0025        11      46      97 ..      45      96 ..      16     117 .. 0.84
   2 ?    0.6   0.7     0.045     2e+02      59      93 ..     151     185 ..     139     190 .. 0.82
   3 !    9.6   4.5   8.2e-05      0.37      49     130 ..     258     337 ..     252     347 .. 0.90
   4 !   15.8   1.2   1.1e-06     0.005      45      91 ..     344     390 ..     332     398 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0025
                .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TT CS
    Sugar_tr 46 vlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaak 97
                  +g+++++ ++  +++s +a +++drfG + + +++ + + ++ ++ a+++
  KIR62255.1 45 AKMGIVAAAEFLPYMLSSSLATPWADRFGVRRTSIVVDAASAAAVAVVAMTP 96
                569999999999********************99999999998888877766 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.045
                 HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  59 aiiGslfagllgdrfGRkkslliaavlfvigavlq 93 
                  ++G++++gll+d++G   ++ i a  f  +a+l 
  KIR62255.1 151 TLFGAVIGGLLIDWVGVTRAIWIDAGTFALCALLV 185
                 57999999999999999999988777777777765 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 8.2e-05
                 HHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTT CS
    Sugar_tr  49 glivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEi 130
                 gl++++f +Ga++G +++ ++g r+ R  +++++a+++ +  +l++a +   ++ v++v  +l+Gig+ +++ l   ++ E 
  KIR62255.1 258 GLVLGVFGAGALLGNVVFTMVGPRLPRTLVFAVGAAMSGAPRLLTMAVT--DHLVVVLVVTFLSGIGIAAVNPLLGATLYER 337
                 8999******************************************999..79***************99988876666665 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 1.1e-06
                 ..HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH CS
    Sugar_tr  45 svlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigav 91 
                 +  +g+  s+++vG  +G+l++g+ + ++G k++ll++avl+ + +v
  KIR62255.1 344 TRVLGIAGSLAFVGLPVGALLGGWSVAVLGLKPALLVMAVLCAVLTV 390
                 5567888899****************************999988766 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   2.6    0.0036        16      32      80 ..      43      92 ..      36     237 .. 0.84
   2 ?   13.8   3.5   4.2e-06     0.019     294     372 ..     290     367 ..     255     376 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0036
  MFS_1_like 32 kaseigiitlilpltsilsppiwgvlaDrfgkrkk.vvilslllsavlfl 80
                ++++ gi+ ++  l  +ls+ + ++ aDrfg r + +v+ ++ ++av+++
  KIR62255.1 43 SPAKMGIVAAAEFLPYMLSSSLATPWADRFGVRRTsIVVDAASAAAVAVV 92
                578899*************************8887333333333333333 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 4.2e-06
  MFS_1_like 294 iiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGl 372
                 + a ++ + r+l +a+++ +++vl++ +L+gi ++++   +     + +p+ l++++ g+  +l f +G  +G+l+GG 
  KIR62255.1 290 VGAAMSGAPRLLTMAVTDHLVVVLVVTFLSGIGIAAVNPLLGATLYERVPDALQTRVLGIAGSLAF-VGLPVGALLGGW 367
                 456778899****************************99988888899****************88.8*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 2629.89
//
Query:       KIR62256.1  [L=423]
Description: GDSL family lipase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-18   66.5   0.9    6.7e-18   65.7   0.9    1.4  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
    1.9e-05   24.8   0.0      3e-05   24.1   0.0    1.4  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase
  ------ inclusion threshold ------
       0.25   10.6   0.0       0.34   10.1   0.0    1.1  1  OSK            OSK domain


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.9   1.1e-21   6.7e-18       1     179 []     210     411 ..     210     411 .. 0.75

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 1.1e-21
                    EEESHHHHTCTTB.CCHCHHCCCCCCCHHHTT...-EEEEE.EEHCCH-H.........HHHHHHHH....CTGGG-T........SEEEEE--CC CS
  Lipase_GDSL_2   1 alGDSiTaGygad.gggrsypaylarllaarl...gldvvnnlgvsGatt.......allrllerlr....dllrlkp........dlvtiliGtN 73 
                    +lGDSi++G g++ +++r++p++la++l ++    + + v nl+  G++        ++  ++++++    +l+rl+         + v+ ++G+N
     KIR62256.1 210 VLGDSIADGNGSTvNTNRRWPDLLADRLIDARpevRTPGVLNLSLAGNRLnhegtepGAGGFPGYYElgpnALARLNEdvfpqtgvRTVVTHLGIN 305
                    69*********7777777777777777766668888888888******8866654553333333333666666666664455555566******** PP

                    CCCTT--HHHHHHH..HHHHHHHHCCC...GEEECEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHHCT-EEE-H..HHHHHHCCCCCGGBBTT CS
  Lipase_GDSL_2  74 DlgrgvpaaaaaandnleelidalraaapgarilvlgplpptpeaaadarelnaviaaynealrevaaeegvpfvDl..hdaladsgerladllad 167
                    D++  +++a+   +  l+++ ++++a+     + +l+p+   +++   ++e +a+++a+n+ lr   + +gv  +D   +d++++s   +a++ +d
     KIR62256.1 306 DIWMSDDSAEKIIAS-LRQVNQQVKARGLTSLVATLTPYEGHGNPGVWTPEKEATRQAVNAYLRGSHEFDGVLDFDKvlRDPAQPSRLLPAYDSGD 400
                    **9999999888885.***********44444447788888888888888899****************999777767777777777666666666 PP

                    S.SSB-HHHHHH CS
  Lipase_GDSL_2 168 dglHPnaaGyrl 179
                      +HPn+ G+++
     KIR62256.1 401 H-IHPNDLGNQA 411
                    5.*******996 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   5.1e-09     3e-05       1     199 [.     208     415 ..     208     416 .. 0.64

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 5.1e-09
                  EEEEESHHHHTTTHHHHHHHCCCCEECCCTTC......................................GCEEEEEEECTTHHHHHHHCCHECTTTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL   1 ivafGDSltdGdgaatlntiqlktpknlnefdl.....................................aldrianignkgasdnelqqllnkyplk 61 
                  +v++GDS+ dG  + t+nt+++    +l++  l                                     +++++  +++ + +++++ +++      
   KIR62256.1 208 VVVLGDSIADGN-GSTVNTNRRWP--DLLADRLidarpevrtpgvlnlslagnrlnhegtepgaggfpgyYELGPNALARLNEDVFPQTGVR------ 296
                  79********95.44443332222..333333345577777776666666655544444444444444444444444444444444444444...... PP

                  CHHHHHCTTSEEEEE--CTCC-EECSSCTTTCEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCHCTCCCCHCCHHHHHHHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  62 seqlkalhpdlviislGtNDsnlgkkstdaakkeaeeyiknlreaikelkeegapkaivvlvsppglgpqeekdakklgekgnefvgeynqrlndlae 159
                             v+  lG ND+            +ae++i++lr+  +++k+ g   ++  l+++ g g+    + ++++e ++++v+ y     +  +
   KIR62256.1 297 ----------TVVTHLGINDI-------WMSDDSAEKIIASLRQVNQQVKARGLTSLVATLTPYEGHGN--PGVWTPEKEATRQAVNAYLRGSHEFDG 375
                  ..........7999*******.......899999****************8885666555655555555..666677777777777777665555555 PP

                  ..HCTEEEECHHHHHHHTHCCGCHCHTSSSB-HHHHHHHHHH CS
                  ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL 160 ..kdgfavvDlydelqglsgieqlkaDglHpsekgyeklael 199
                    +++ ++ D  + +  l+ ++++  D++Hp++ g++++a++
   KIR62256.1 376 vlDFDKVLRDPAQPSRLLPAYDSG--DHIHPNDLGNQAMADA 415
                  457777777777777777433333..**************97 PP

>> OSK  OSK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   5.6e-05      0.34      72     119 ..     296     344 ..     280     387 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 5.6e-05
                 -EEEEE--HHHH.HTT--HHHHHHHHHHHHHHHHHTT-EEEEE-----G CS
         OSK  72 srvvvnlGsvDi.lngktlvelehDlteLlkelrernvaiilttlaPla 119
                   vv +lG  Di +   + ++++  l+++ ++++ r+++ +++tl+P  
  KIR62256.1 296 RTVVTHLGINDIwMSDDSAEKIIASLRQVNQQVKARGLTSLVATLTPYE 344
                 46999*******556778999**************************64 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2887.13
//
Query:       KIR62257.1  [L=360]
Description: 2-hydroxy-acid oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   8.6e-122  406.5   3.1   1.1e-121  406.2   3.1    1.0  1  FMN_dh        FMN-dependent dehydrogenase
    0.00013   21.5   6.4    0.00021   20.8   6.4    1.3  1  NMO           Nitronate monooxygenase
    0.00076   18.6   1.8     0.0023   17.0   1.8    1.7  1  IMPDH         IMP dehydrogenase / GMP reductase domain
     0.0011   18.2   2.0     0.0036   16.5   1.9    1.7  2  Glu_synthase  Conserved region in glutamate synthase
     0.0044   16.4   3.0       0.86    8.9   0.1    2.5  2  ThiG          Thiazole biosynthesis protein ThiG
  ------ inclusion threshold ------
      0.074   12.3   0.1       0.12   11.6   0.1    1.3  1  DHO_dh        Dihydroorotate dehydrogenase
       0.23   10.8   1.1        1.7    7.9   0.0    2.6  3  TMP-TENI      Thiamine monophosphate synthase


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  406.2   3.1  4.1e-125  1.1e-121       1     341 [.      14     351 ..      14     356 .. 0.96

  Alignments for each domain:
  == domain 1  score: 406.2 bits;  conditional E-value: 4.1e-125
                 HHCCS-HHHHHHHH--STTSHHHHHHHHGGGGEEE---SSSS-SS-B--EEETTEEESSSEEE--BSTGGGTSTTHHHHHHHHHHHHTS-EEEETT-SS CS
      FMN_dh   1 ArkrlpkkafayvaggagdevtlrenraaferirlrprvlrdvskvdlsttllGqklslPvliaPvglaklahpdgelalaraaakagipfvlstvast 99 
                 Ar+ lp++++++vagg+g e++l++nraa++r++  pr+lr++ ++ +   llG+  +lPv +aP+++++l+hpdge ala aa +ag+p+v st++s+
  KIR62257.1  14 AREVLPPEVYDFVAGGSGAETALAANRAALDRVAVLPRMLRGIDRPRTDAPLLGRAQALPVAVAPMAYQRLVHPDGEPALAAAAGAAGVPYVASTLSSA 112
                 899************************************************************************************************ PP

                 -HHHHHHHHTT-EEEEEE-CSSHHHHHHHHHHHHHCTESEEEEESSTSS---BHHHHHCT--BSTT-T.G.TTGGGSTSGSCCTTH..THHHHHHCCCH CS
      FMN_dh 100 sleevaaaaegplwfqlyvpkdrelteellkraeaagykalvltvDtpvlgkRerdlrngfslppklklrnllqelakpewaaealkkasaaaefvgkq 198
                 ++e++aa a+gp+wfqly+ +dr +++el++ra++ag++al+ltvD+p+lg R rd+rngf+lpp++ ++nl  + ++ + a      +sa a++++  
  KIR62257.1 113 TIEQIAA-AGGPVWFQLYWLRDRGMVRELVDRAQRAGCTALMLTVDVPILGPRLRDVRNGFALPPHVAAANLPGSRDDLAHAGTPG--TSAVARHTSAA 208
                 *****99.678*******************************************************99777777666666666655..667779***** PP

                 B-TC--HHHHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEE CS
      FMN_dh 199 ldpsltwddikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdav 297
                 + ++ltw+d++wlr +t+lplvvKGvl+++da +a++aG+d++vvSNHGGRqld apa + +Lp+++ avg+r+evlvDgGi+ G+Dvl+AlalGA++v
  KIR62257.1 209 FASALTWSDVAWLRGRTDLPLVVKGVLDPRDAVLAADAGADAVVVSNHGGRQLDAAPAGLTMLPQVRTAVGDRCEVLVDGGISGGVDVLRALALGASGV 307
                 *************************************************************************************************** PP

                 EESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHH CS
      FMN_dh 298 llGRpflyglaagGeeGvervleilraelertmallGvksvael 341
                 l+GRp+l++la+gG++G++ ++ +l ael+ +++l+G+++ ae 
  KIR62257.1 308 LVGRPLLWALAVGGRAGADAAFALLAAELRDALTLAGCADPAEA 351
                 ***************************************99886 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   6.4   8.1e-08   0.00021     149     228 ..     240     316 ..     230     356 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 8.1e-08
         NMO 149 arkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavd..iPviAaGGiidrrgvaaaLalGAsgvqigtrfLlt 228
                 a  ++ +GaDa++v  ++ GG q + +++    ++++pqv+ av     v+  GGi  + +v  aLalGAsgv +g  +L +
  KIR62257.1 240 AVLAADAGADAVVV--SNHGGRQLDAAPA---GLTMLPQVRTAVGdrCEVLVDGGISGGVDVLRALALGASGVLVGRPLLWA 316
                 5678999*******..589****977776...68899*******999*****************************988865 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.8   9.1e-07    0.0023     201     238 ..     275     312 ..     200     317 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.1e-07
                 HHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 201 eaakkagvpviaDGGikysgdivkAlaaGadavmlGsl 238
                 ++a     +v+ DGGi+   d+ +Ala+Ga+ v++G+ 
  KIR62257.1 275 RTAVGDRCEVLVDGGISGGVDVLRALALGASGVLVGRP 312
                 33444558899*************************85 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.24   6.2e+02     277     303 ..     229     254 ..     201     259 .. 0.72
   2 !   16.5   1.9   1.4e-06    0.0036     269     310 ..     276     317 ..     239     321 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.24
                   EEEESS--SHHHHHHHHHHT-SEEE-S CS
  Glu_synthase 277 liadGglktgadvvkalalGAdavgig 303
                   l ++G l  ++d v+a+  GAdav ++
    KIR62257.1 229 LVVKGVL-DPRDAVLAADAGADAVVVS 254
                   5555544.3667777777777777655 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.4e-06
                   TT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHHHT CS
  Glu_synthase 269 eglrdrvsliadGglktgadvvkalalGAdavgigtaalial 310
                   + + dr ++ +dGg+  g+dv+ alalGA  v +g+  l al
    KIR62257.1 276 TAVGDRCEVLVDGGISGGVDVLRALALGASGVLVGRPLLWAL 317
                   45679999***************************9988776 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00034      0.86     167     204 ..     218     254 ..     197     270 .. 0.89
   2 !    7.3   0.5     0.001       2.6     176     204 ..     282     310 ..     265     331 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00034
                 HHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEES CS
        ThiG 167 lkiiieeakvPvivDAGigspsdaaqamelGadavlln 204
                 +  ++ ++++P++v  G+  p da+ a + Gadav++ 
  KIR62257.1 218 VAWLRGRTDLPLVVK-GVLDPRDAVLAADAGADAVVVS 254
                 66788899****996.9******************986 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.001
                 S-BEEES---SHHHHHHHHHTT-SEEEES CS
        ThiG 176 vPvivDAGigspsdaaqamelGadavlln 204
                   v+vD Gi    d+  a+ lGa++vl+ 
  KIR62257.1 282 CEVLVDGGISGGVDVLRALALGASGVLVG 310
                 5699***********************96 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.5e-05      0.12     228     274 ..     265     311 ..     231     317 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.5e-05
                 HHHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESH CS
      DHO_dh 228 dialkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvyt 274
                 + +l ++ ++++ + ++  ++  GGi+ g D+l  +  GAs v v+ 
  KIR62257.1 265 PAGLTMLPQVRTAVGDRCEVLVDGGISGGVDVLRALALGASGVLVGR 311
                 6789999**********************************998875 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.4   3.5e+03     154     177 ..      25      48 ..       7      49 .. 0.77
   2 ?    7.9   0.0   0.00068       1.7     130     178 ..     206     254 ..     196     256 .. 0.86
   3 ?    0.3   0.1      0.15   3.7e+02     133     177 ..     262     309 ..     260     313 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.4
    TMP-TENI 154 vaiGGitlenvaevleagadgvav 177
                 ++ GG  +e++ ++ +a +d+vav
  KIR62257.1  25 FVAGGSGAETALAANRAALDRVAV 48 
                 577888888888888888888887 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00068
    TMP-TENI 130 tKkdaeplgleglkelaealeiPvvaiGGitlenvaevleagadgvavv 178
                 +   a++l ++ +++l+ ++ +P+v+ G +++ ++  +++agad v v 
  KIR62257.1 206 SAAFASALTWSDVAWLRGRTDLPLVVKGVLDPRDAVLAADAGADAVVVS 254
                 4555688999***********************************9986 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.15
    TMP-TENI 133 daeplgleglkelaeale..iPvvaiGGitl.envaevleagadgvav 177
                 da+p+gl+ l +++ a+   + v + GGi+   +v ++l+ ga+gv v
  KIR62257.1 262 DAAPAGLTMLPQVRTAVGdrCEVLVDGGISGgVDVLRALALGASGVLV 309
                 568999999999999999999999999997525777888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2801.36
//
Query:       KIR62258.1  [L=76]
Description: hypothetical protein TK50_30020 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 539.74
//
Query:       KIR62259.1  [L=108]
Description: hypothetical protein TK50_30025 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
          7    6.8   6.9        5.8    7.1   4.0    1.9  2  Arch_flagellin   Archaebacterial flagellin


Domain annotation for each model (and alignments):
>> Arch_flagellin  Archaebacterial flagellin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.0   0.00032       5.8       6      29 ..       9      32 ..       6      34 .. 0.89
   2 ?    0.4   0.0     0.037   6.7e+02      17      34 ..      42      59 ..      36      61 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00032
                    HHHHHHHHHHHHHHHHHHHHHHHH CS
  Arch_flagellin  6 gtlIvfIAmVlVAAvaagvlinta 29
                    ++l++f++++++ A+aagv++  +
      KIR62259.1  9 EALVLFVVALVAVAAAAGVWTAVS 32
                    79*****************98765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.037
                    HHHHHHHHHHHHHHHHHH CS
  Arch_flagellin 17 VAAvaagvlintagflqq 34
                    VA +++g+l++ +g+l+ 
      KIR62259.1 42 VALIVVGTLLGLTGDLTL 59
                    999********9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 716.39
//
Query:       KIR62260.1  [L=256]
Description: translation initiation factor IF-2 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     3e-103  345.0   1.1   3.3e-103  344.8   1.1    1.0  1  Methyltransf_19  S-adenosyl methyltransferase
     0.0086   15.9   0.0      0.012   15.4   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.015   14.6   0.0      0.018   14.4   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.067   13.9   0.0       0.12   13.1   0.0    1.5  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_19  S-adenosyl methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.8   1.1  7.4e-107  3.3e-103       8     267 ..       1     255 [.       1     256 [] 0.95

  Alignments for each domain:
  == domain 1  score: 344.8 bits;  conditional E-value: 7.4e-107
  Methyltransf_19   8 idtsrphsaRvydylLGGkdnypvDreaaeallkalpelvkvaranRaflrRavrvlaeeaGirqflDiGtGlPtednvHqvaqrvaPesRvvY 101
                      +dts++h aRv++y+LGGkdn++ Dr++++++ +++p + +vara+R+fl+Ravr+la eaG+rqflDiGtGlPt+dn+Hqvaq+vaP++R+vY
       KIR62260.1   1 MDTSVAHNARVWNYWLGGKDNFEPDRRVGDHVRAMFPVIGEVARADRRFLARAVRHLAGEAGVRQFLDIGTGLPTADNTHQVAQAVAPDARIVY 94 
                      69******************************************************************************************** PP

  Methyltransf_19 102 vDnDPivlaharallestpeGatdyieaDlrdpeeilespearevlDldrPvAlllvailhfveDeedaaaivrelvdalpaGsllvlshlted 195
                      vDnDP+vl+harall+s++eGatdy+eaD++dp++il+  +a+++lD+drPvA++++ il fv D+++a+aivr+l+da+p+Gs+l+l+h t +
       KIR62260.1  95 VDNDPMVLVHARALLTSSAEGATDYVEADVHDPASILT--AAARTLDFDRPVAVMMLGILNFVLDTDEAVAIVRRLMDAMPPGSYLALTHPTVE 186
                      **************************************..9***************************************************** PP

  Methyltransf_19 196 lnpeevekvekv.ykeaaaplrlRsrkeverffdglelvePGlvevteWrpdeeaeeeeteeeisvyagvark 267
                      l  e++  + ++ +++aa p+r R+ +e++rf+dglelvePGlv+ ++Wrpd  +    +++ +  y+ var+
       KIR62260.1 187 LGGEANVPAMEFwNANAAPPIRARTGAEIARFLDGLELVEPGLVSCARWRPDDGE----DPAIVPQYGCVARR 255
                      98777665555505666889********************************984....68888899999986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.6e-06     0.012       6     113 ..      65     184 ..      62     212 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.6e-06
  Methyltransf_31   6 rvlDlGCG..tGeltfelaeelgpkaevvGiDiseeaielAre...naqklgldnveFeqgdieelekl.ledekfDl...ilsnevl...nal 87 
                      ++lD+G+G  t + t++ a+ + p+a++v +D+++ ++ +Ar+    +++   d ve  + d  ++ ++      fD    ++  ++l    ++
       KIR62260.1  65 QFLDIGTGlpTADNTHQVAQAVAPDARIVYVDNDPMVLVHARAlltSSAEGATDYVEADVHDPASILTAaARTLDFDRpvaVMMLGILnfvLDT 158
                      689*****99999******************************663334444458888888888855553444666655443333444555666 PP

  Methyltransf_31  88 adpdkileeiervlkpggilliedpr 113
                       +  +i +++ +++ pg++l++++p 
       KIR62260.1 159 DEAVAIVRRLMDAMPPGSYLALTHPT 184
                      66777777888888899999999887 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     4e-06     0.018      41     107 ..      52     124 ..      34     200 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4e-06
                      HH--S--TT....EEEEES-T..T-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--T CS
  Ubie_methyltran  41 klvavkrga....kvlDvagG..tgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqana 107
                      + v ++ g+    ++lD+ +G  t+D + +++++v    ++v +D ++++L  +++ l  ++    +++ a+ 
       KIR62260.1  52 RAVRHLAGEagvrQFLDIGTGlpTADNTHQVAQAVAPDARIVYVDNDPMVLVHARALLTSSAEGATDYVEADV 124
                      44444444444449*****99889**********************************999999999988764 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.6e-05      0.12       1      93 [.      67     169 ..      67     178 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.6e-05
  Methyltransf_12   1 LeiGcG..tGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg....ssfDl...vvasnvlhhlkdire 84 
                      L+iG+G  t+++++ ++++  pd+++++vD +p ++++a++ l +  +  ++ ve ++ d ++          fD    v +++ l+ + d++e
       KIR62260.1  67 LDIGTGlpTADNTHQVAQAVaPDARIVYVDNDPMVLVHARALLTSSAEGATDYVEADVHDPASILTAaartLDFDRpvaVMMLGILNFVLDTDE 160
                      788888667899999999999***************9999999988888888888888887665555886644443666889999999988888 PP

  Methyltransf_12  85 vldnirklL 93 
                      +++ +r+l+
       KIR62260.1 161 AVAIVRRLM 169
                      887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1836.99
//
Query:       KIR62261.1  [L=408]
Description: pyruvate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-74  248.8   0.0    6.9e-74  248.5   0.0    1.1  1  E1_dh            Dehydrogenase E1 component
    0.00013   21.3   0.0    0.00024   20.4   0.0    1.4  1  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
  ------ inclusion threshold ------
      0.032   13.2   0.0      0.046   12.7   0.0    1.2  1  Transketolase_N  Transketolase, thiamine diphosphate binding 


Domain annotation for each model (and alignments):
>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.5   0.0   1.2e-77   6.9e-74       2     295 ..      86     370 ..      85     374 .. 0.95

  Alignments for each domain:
  == domain 1  score: 248.5 bits;  conditional E-value: 1.2e-77
                 HHHHHHHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TTSEEEESS--HHHHHHTT--HHHHHHHHTT-TTTSSGTT-.-E..BTT..BEEE- CS
       E1_dh   2 klvllrrvedaldalykrkkrigfyhlsagqealkvgiaaalekeDliiteYReagvllarglsleeilaeltgkvkgkggsrhelmyaekesrilggn 100
                 + +++ r +d  +  + +++r+ +y +s gqea++vg+  a+ ++D+++++YRe   l+ rg++ +e+l  l+g+        h   y ++ ++  ++ 
  KIR62261.1  86 RRMVVGRRFDTQATALTKQGRLAVYPSSRGQEACQVGAVLAVRDTDWVFPTYRESMALVSRGIDPVEVLTLLRGDW-------H-CGYDPTRVHTAPQC 176
                 788999999999999*************************************************************.......7.5567788899999* PP

                 SSTTTHHHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEESEETTEEHHHH-S---GGG..TTTTS-EEEEETTSHHH CS
       E1_dh 101 givgaqvplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpvifvveNNkygisTeaekasaskeladrargvgipglrVdgnDpla 199
                  ++++q  ++aG+a+    +g ++va+++iGDgA+++Gd++e++n+aa++k+pv+f+v+NNky+is++ ++++a+++la +++g+g+p+ +VdgnDp+a
  KIR62261.1 177 TPLATQCVHAAGLAYGEAHQGRDTVALAFIGDGATSEGDFHEGVNFAAVFKAPVVFFVQNNKYAISVPLSRQTAAPSLAYKGVGYGVPSEQVDGNDPVA 275
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHS- CS
       E1_dh 200 vyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvseeelkeiekevrkeveeavkkaeskk 295
                 v+++   A+ +ar+g+gp l+e+ tYR+++H+  Dd+++yr   ev+ +r   dp++rl+++L ++g +++  + +i +++++   +  ++   ++
  KIR62261.1 276 VLAVLTRAVAHARAGNGPYLVEAHTYRMEPHTNADDATRYRDGAEVDTWRDR-DPVARLETYLRTRGALDDAAVAAIAEQAEAYAADLRERMHTQP 370
                 *****************************************99999999988.***************************9998877766666655 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     4e-08   0.00024     115     177 ..     181     243 ..     172     252 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4e-08
  DXP_synthase_N 115 tsisaalGlavardlkgekkkvvaviGDgaltgGmafealnnigelkkkllvilNdNemsisk 177
                     t    a Gla  + ++g+++ ++a iGDga + G  +e++n ++  k+ ++  + +N+ +is 
      KIR62261.1 181 TQCVHAAGLAYGEAHQGRDTVALAFIGDGATSEGDFHEGVNFAAVFKAPVVFFVQNNKYAISV 243
                     5556799***************************************************99986 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.8e-06     0.046     140     243 ..     195     300 ..     179     319 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.8e-06
                      B-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTEEGGGT--S-HHHHHHHTT-EEEEE.TTTT-HHHH....HHHHHH CS
  Transketolase_N 140 fdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidGeteisftedvakrfeaygWhviev.edgedveai....kaaiee 228
                      ++  d    +++gDg   eG  +e +++a++ k   ++ +  +nk +i    + +++   +  ++ +g+ v ++  dg+d  a+    ++a+++
       KIR62261.1 195 HQGRDTVALAFIGDGATSEGDFHEGVNFAAVFKA-PVVFFVQNNKYAISVPLSRQTAA-PSLAYKGVGYGVPSEqVDGNDPVAVlavlTRAVAH 286
                      5556788899*********************995.57888899999998887766554.4567********88879999987762222566777 PP

                      HHH-TTS-EEEEEE- CS
  Transketolase_N 229 akaekdkPsliklrt 243
                      a+a  + P l++ +t
       KIR62261.1 287 ARAG-NGPYLVEAHT 300
                      7766.6788887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3213.27
//
Query:       KIR62262.1  [L=122]
Description: peptidylprolyl isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-31  107.4   0.0    4.3e-31  107.1   0.0    1.1  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.0   2.4e-35   4.3e-31       2      94 .]      28     119 ..      27     119 .. 0.97

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 2.4e-35
                 SCBB-TTCEEEEEEEEEET.TSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   2 keeakegdtVtvhykgkle.dgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                 +e a++g+++tvhy+g  +  g++fd s++r+  +ef +G g+vi G++++++gm+vG++r+ltipp+l+Yg++g+ ggvi+p++tLvF v Ll
  KIR62262.1  28 PE-AQRGQRATVHYVGVAHsTGREFDASWNRGDAFEFPLGGGRVIAGWDQGVVGMRVGGRRKLTIPPHLGYGNQGA-GGVIAPGETLVFVVDLL 119
                 67.9**************999*******************************************************.99************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       180  (0.0100396); expected 358.6 (0.02)
Passed bias filter:                      153  (0.00853366); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 859.22
//
Query:       KIR62263.1  [L=188]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-06   28.1  11.0    2.3e-06   28.1  11.0    2.2  2  DoxX      DoxX
  ------ inclusion threshold ------
      0.059   13.3   1.4        0.1   12.5   1.2    1.4  1  DoxD      TQO small subunit DoxD


Domain annotation for each model (and alignments):
>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1  11.0   2.6e-10   2.3e-06       5      83 ..      38     138 ..      34     140 .. 0.76
   2 ?    1.5   0.1     0.051   4.6e+02      44      65 ..     154     175 ..     144     182 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 2.6e-10
        DoxX   5 lRlllgvlfiahGlqkltg............fgleg...taasla..alglpp...........pellaylaalvElvgglllllGlltRlaAlalavt 75 
                 +Rl+lg++f+++ l+k++g                g   t+++l   a                ++++ +l +++  + g++lllG++tR+aA a  ++
  KIR62263.1  38 IRLALGWTFLWAFLDKMFGlghetaaknawiN---GgspTKGFLSfgA---AGpfkgfyngiagAAWADWLFMVGLAAIGVALLLGVGTRIAATAGGLL 130
                 7*****************98877777775542...1333444443331...2133455556665*******************************9999 PP

        DoxX  76 llvatltv 83 
                 l++ + +v
  KIR62263.1 131 LVMMWTAV 138
                 99998766 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.051
        DoxX  44 laylaalvElvgglllllGllt 65 
                 +a+la+l+ +++g  l lG+  
  KIR62263.1 154 AAVLAVLALVGAGDTLGLGRTW 175
                 7889999999999999999754 PP

>> DoxD  TQO small subunit DoxD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.2   1.1e-05       0.1       5      94 ..      38     126 ..      34     145 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.1e-05
        DoxD   5 lRlalgliflsagirkkvlkpakLdPnsssyv..GgkliefLpqa..siikdlleivvlnrsllvtalvlftlvEiivGlllliGlltRlsslv 94 
                 +Rlalg++fl a++ k     ++     ++++  G     fL  +  +++k++ + ++     ++ ++v ++     +G+ ll+G+ tR+++++
  KIR62263.1  38 IRLALGWTFLWAFLDKMFGL-GHETAAKNAWIngGSPTKGFLSFGaaGPFKGFYNGIAGAAWADWLFMVGLA----AIGVALLLGVGTRIAATA 126
                 8************9877644.344445555553355567798754449*****************9999888....78999********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1497.89
//
Query:       KIR62264.1  [L=374]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-13   49.2   0.0    7.1e-13   48.4   0.0    1.4  1  DICT      Sensory domain in DIguanylate Cyclases and Two-comp
  ------ inclusion threshold ------
       0.15   11.8   0.0       0.26   11.0   0.0    1.3  1  GGDEF     Diguanylate cyclase, GGDEF domain


Domain annotation for each model (and alignments):
>> DICT  Sensory domain in DIguanylate Cyclases and Two-component system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   7.9e-17   7.1e-13      17     127 ..       7     112 ..       2     113 .. 0.89

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 7.9e-17
        DICT  17 plvvskatLlalvraleDllie..qkipatlwvklqrekiwqselerYrrlagsssqvyilaarepeeefkeeptkssepvesvqlepnsqLrrewfLi 113
                 p  ++k++L+a+++a+e  +++  +++p ++++ +qr  ++  e + Y+r+a ++   ++  +        ++p+  ++  + v+l++ + L+rew ++
  KIR62264.1   7 PELLTKRSLVAVSHAIESAALAtaEDGPLVVIALFQRMPYFDRERAVYERIAATAAATVVGVV-------GQRPEALPAGACGVALDETEDLAREWSVV 98 
                 66789****************9755566678899*****************999988877777.......4468899***********99********* PP

        DICT 114 vlspqfsslilAqe 127
                  l+p+f ++++A++
  KIR62264.1  99 ALTPRFGAALVAHD 112
                 ************96 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.9e-05      0.26      50     114 ..     257     321 ..     235     335 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.9e-05
                 H-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHHHHHHHHHHHCS-EEE CS
       GGDEF  50 yGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaaelaerirrllaklkepv 114
                 +G  ++ +  q+v  +    lr+ d ++Rl++ e +++lp  ++e+a ++a  +++++a l++++
  KIR62264.1 257 FGRRSAAREAQAVIGAVTAPLRPVDRAVRLSDQEYLLILPALTEEQAVAVAGQVHEAVAGLARSY 321
                 56666666667777778888999********************************9999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2720.28
//
Query:       KIR62265.1  [L=395]
Description: arsenic transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-25   89.3   8.9    4.1e-25   89.0   8.9    1.0  1  ArsB      Arsenical pump membrane protein
    7.3e-20   71.3  29.9    7.3e-20   71.3  29.9    2.2  2  CitMHS    Citrate transporter


Domain annotation for each model (and alignments):
>> ArsB  Arsenical pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   8.9   4.6e-29   4.1e-25      50     411 ..      41     383 ..      14     393 .. 0.82

  Alignments for each domain:
  == domain 1  score: 89.0 bits;  conditional E-value: 4.6e-29
        ArsB  50 ivwnatlafvaiilislildnigffewaalhmakaakgygvrmfvyvsllgaivaalfandgaaliltpivlamvralhfneklvfpfiiasgfiadtt 148
                  +    l + ++++++ +    g+f+  a ++a+aa+g    +fv    + +  +  +  d +a++ltp++la+ r l +     +p+ +++ ++a+t+
  KIR62265.1  41 RILPLLLFLGTVVVLAELTAVAGVFDVLAGRLARAARGSYPALFVLCVGFASATTIALNLDTTAVLLTPVMLALARRLGMP---PLPLALTTVWLANTA 136
                 4444555555677777778889****************9999998766555555555677999***************986...589************ PP

        ArsB 149 slpfvvsnlvnivsadyfhitfidyasrmvvpylfsllasiivlylffrksipkrydltevkkpveaikdqnmfrlswyilgllligyfaseffsipvs 247
                 sl + vsnl n+++ad + +  + ya+rm +p   ++ a++ +l++ + +   +  d      p     d+ ++r++     ll+ g +a   + i  +
  KIR62265.1 137 SLLLPVSNLTNLLAADRVDLDPLPYAARMALPQAATIAATMALLWVGYWRRGRRGVDRFVAPGP-HVPADRVLYRIALAGCLLLVAGILAGVEVGIASA 234
                 ********************************************99877766666665444444.455799******999999999***9999999888 PP

        ArsB 248 vvagsiaiifliaaqkspavhtkkvvkeapwaivffsigmyvvvygvrnagltdvlsdviqaaadqglfagtigmgfiaailssimnnlptvmidalai 346
                   ag + + f  aa++  a++        pw +++f  g+++vv  +   gl dv+  ++    d g   g++  g   a+ls+++nnlp+ +     +
  KIR62265.1 235 AAAGLVLVGF--AARNRAALRPAL----VPWRLLVFVTGLFLVVQTLGRYGLDDVVGVLLG--PDGG-ALGALRAGGTGALLSNVVNNLPAYVAGEAVL 324
                 8888765554..778777877654....4**************************986653..4555.5689999999************987766666 PP

        ArsB 347 agtdthgmmrealiyanvigsdlgpkitpigslatllwlhvlshkgmkiswgtyfktgiiltipt 411
                    d+        + a +ig++ gp +tp  slatllw       g+ +  g ++ +g +l++ +
  KIR62265.1 325 PPGDATR------LLALLIGTNAGPLVTPWASLATLLWYERCRAAGVAVPLGRFLAAGALLAVAA 383
                 6666544......55789*****************************************999875 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3  29.9   8.2e-24   7.3e-20       9     272 ..      13     318 ..       6     330 .. 0.67
   2 ?   -2.1   6.5      0.19   1.7e+03     116     162 ..     331     387 ..     318     395 .] 0.73

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 8.2e-24
                 xxxxxxxxxxxxxx..xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
      CitMHS   9 lrldvvallvlvll..vltiee..alsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrdllvllvlltallsafvsn.dgvvlimipiv 102
                 ++l+++ + ++++l  +l   e  a+ g   p++l+l+ +++++++ + +G+fd la +l+r+a+g+   l++l+++ a  + ++ n d+++++++p++
  KIR62265.1  13 VALALALVGAACALtgLLPRAEtvATLGRILPLLLFLGTVVVLAELTAVAGVFDVLAGRLARAARGSYPALFVLCVGFASATTIALNlDTTAVLLTPVM 111
                 4444444444444476444444677778899999********************************9885555555555555566666*********** PP

                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxx................. RF
      CitMHS 103 lslakrlkklppl.lliplalaaniggaltpiGtpttraaarpglslpnlll......................lalllvgl................. 161
                 l+la+r  ++ppl l++  +  an+ ++l+p+ +             +nll+                      +a+++++l                 
  KIR62265.1 112 LALARR-LGMPPLpLALTTVWLANTASLLLPVSNL------------TNLLAadrvdldplpyaarmalpqaatIAATMALLwvgywrrgrrgvdrfva 197
                 *****9.677777799999999999**********............7777777777777666666666666663333333344444444444444444 PP

                 ..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 162 ..................lplvllfmfgvalalpvnapkvkkqkaiieaiarsllpvatillla...........ykkveWsvlllfaGvfllvgaleq 231
                                   + l++++                  + +   ia+++    ++   +              v+W +l++++G+fl+v+ l++
  KIR62265.1 198 pgphvpadrvlyrialagCLLLVAG----------------ILAGVEVGIASAAAAGLVL---VgfaarnraalrPALVPWRLLVFVTGLFLVVQTLGR 277
                 4444444444333333221111111................1112222233333322222...13336666665555589******************* PP

                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
      CitMHS 232 tGilealadllga.ggplvalalvlglial.lsafisnvavaa 272
                  G+ + ++ llg  gg l   al +g +++ ls++++n ++++
  KIR62265.1 278 YGLDDVVGVLLGPdGGALG--ALRAGGTGAlLSNVVNNLPAYV 318
                 **99999999976456655..4556667777**********95 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.19
                 xxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 116 lliplalaaniggaltpiGtpttraa..........arpglslpnllllalllvgll 162
                  l++l ++ n+g ++tp+    t+            +++g++l  ++lla++++++ 
  KIR62265.1 331 RLLALLIGTNAGPLVTPWASLATLLWyercraagvaVPLGRFLAAGALLAVAATAAG 387
                 678899999999999999999666668888888888888888888888777666553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2774.15
//
Query:       KIR62266.1  [L=262]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-30  106.8   0.0    1.7e-30  106.3   0.0    1.2  1  ABC_tran     ABC transporter
    1.1e-05   25.1   0.0      0.022   14.2   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
    2.2e-05   24.1   0.0    4.4e-05   23.1   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain
    4.3e-05   23.5   0.0      0.013   15.3   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00027   21.4   0.2    0.00053   20.4   0.2    1.7  1  AAA_16       AAA ATPase domain
    0.00042   20.9   0.0    0.00059   20.4   0.0    1.1  1  AAA_23       AAA domain
      0.001   19.0   0.0     0.0019   18.1   0.0    1.4  1  RsgA_GTPase  RsgA GTPase
     0.0031   17.8   0.1      0.014   15.7   0.0    1.9  2  AAA_22       AAA domain
     0.0037   16.9   0.3      0.063   12.8   0.2    2.4  2  AAA_25       AAA domain
     0.0056   16.4   2.3      0.088   12.5   0.2    2.4  2  AAA_30       AAA domain
  ------ inclusion threshold ------
       0.01   16.1   0.6       0.74   10.0   0.1    2.2  2  AAA_28       AAA domain
      0.061   13.5   0.1       0.12   12.5   0.1    1.6  1  AAA_33       AAA domain
      0.065   13.2   0.2       0.47   10.3   0.1    2.1  2  NACHT        NACHT domain
      0.085   12.6   0.1       0.45   10.2   0.0    1.9  2  AAA_24       AAA domain
       0.12   12.4   0.0       0.43   10.7   0.0    1.9  2  MMR_HSR1     50S ribosome-binding GTPase
       0.19   11.8   0.1       0.32   11.1   0.1    1.3  1  DUF87        Helicase HerA, central domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.3   0.0   1.5e-33   1.7e-30       1     136 [.      34     180 ..      34     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: 106.3 bits;  conditional E-value: 1.5e-33
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren...........esdee 84 
                 l+ v++++ +g+ +ai+G++G+GKStL+ +lagl +pt+G++++ ++d+      + +   r +ig+++q+ +l p lt++en            + ++
  KIR62266.1  34 LDGVDVDFAAGRFTAIMGPSGSGKSTLMHCLAGLDRPTAGTVRIGDADTGGlddrRLTLLRRDRIGFVFQKFNLLPALTAEENvvlplaiagrrPDPAW 132
                 7899****************************************99998887664444456889*************************9988777778 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + ++++ +gl +      +++p++LSgGq+qrva+aral++kp ++++DEpt
  KIR62266.1 133 LRQVVAAVGLADRL----RHRPAELSGGQQQRVAVARALITKPWVIFADEPT 180
                 99999999988844....4556*****************************9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     2e-05     0.022      24      44 ..      44      64 ..      33      67 .. 0.83
   2 !    8.9   0.0   0.00081       0.9     136     209 ..     152     223 ..      93     229 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
                SSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldAi 44
                 +ftai+Gp GSGKs l+  +
  KIR62266.1 44 GRFTAIMGPSGSGKSTLMHCL 64
                57**************99765 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00081
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEE.E-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.xxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfiv.islreemlekadklv 209
                 +LSgG+++ va+a  +     kp  ++  De   +LD +  ++v +ll+e+ ++  Q +v ++++ +  ++ad++v
  KIR62266.1 152 ELSGGQQQRVAVARAL---ITKPWVIF-ADEPTGNLDSRSGAEVLRLLREAVDTlGQTVVmVTHDPTAASHADRVV 223
                 89*****999988553...24555554.5*********************99986676553788888899999876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   3.9e-08   4.4e-05      13      40 ..      35      62 ..      32      72 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.9e-08
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllD 40
                dg ++++    +t ++GpsGsGKSTl+ 
  KIR62266.1 35 DGVDVDFAAGRFTAIMGPSGSGKSTLMH 62
                77889998555***************95 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.2e-05     0.013       1      24 [.      46      69 ..      46     107 .. 0.71
   2 !    6.2   0.0     0.007       7.8     236     300 ..     152     214 ..     144     216 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.2e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllar 24
                ++++ Gp gsGKS+L+ +l +l r
  KIR62266.1 46 FTAIMGPSGSGKSTLMHCLAGLDR 69
                79*****************99944 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.007
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQv.iltTHSpl 300
                 elS G+++  a++ al+  +    +++ DEp  +L+ +  +++l+ll+e+ ++++Q  +++TH+p+
  KIR62266.1 152 ELSGGQQQRVAVARALITKP---WVIFADEPTGNLDSRSGAEVLRLLREAVDTLGQTvVMVTHDPT 214
                 66667666656666666544...77888*********999999999999999777777******96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   4.8e-07   0.00053      25     159 ..      45     199 ..      33     252 .. 0.63

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.8e-07
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdql....esa...ipysalaqalareellrqllde.........aesaeleawrekleeala. 106
                 + + + G+sG+GKs+l+ +l+  l +  + ++r    +     ++    ++++ +  ++ +  ll +l +e         a  +  +aw ++  +a++ 
  KIR62266.1  45 RFTAIMGPSGSGKSTLMHCLA-GLDRPTAGTVRIGDADTggldDRRltlLRRDRIGFVFQKFNLLPALTAEenvvlplaiAGRRPDPAWLRQVVAAVGl 142
                 67899***************9.68888544433333333233222233333355777777778888888887777776665566677777777776666 PP

      AAA_16 107 ......avpelagaeasrllellkrllallsrderplvlvlDdlq.....wadeaslqllaaLl 159
                         +el+g + +r++ + ++l+       +p+v++ D+       +  ++ l ll++ +
  KIR62266.1 143 adrlrhRPAELSGGQQQRVAVA-RALI------TKPWVIFADEPTgnldsRSGAEVLRLLREAV 199
                 6655443333333322332222.3333......4567777774333211333333333333333 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   5.2e-07   0.00059      11      39 ..      35      64 ..      31      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 5.2e-07
      AAA_23 11 rdqeidF.skgltlItGpNGaGKTTildAi 39
                +++++dF    +t+I Gp G+GK+T++ ++
  KIR62266.1 35 DGVDVDFaAGRFTAIMGPSGSGKSTLMHCL 64
                56789995557****************998 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.7e-06    0.0019      98     129 ..      43      74 ..      31      97 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.7e-06
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktge 129
                  ++++++++G+SG GKStL+  l++ ++   g 
   KIR62266.1  43 AGRFTAIMGPSGSGKSTLMHCLAGLDRPTAGT 74 
                  5699******************9865554444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.2e-05     0.014       6      27 ..      45      66 ..      42      95 .. 0.85
   2 ?   -0.7   0.0       1.4   1.6e+03      76     117 ..     151     200 ..     131     213 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.2e-05
      AAA_22  6 gilvvtGesGtGKTtllrrlle 27
                ++++++G+sG+GK+tl+  l+ 
  KIR62266.1 45 RFTAIMGPSGSGKSTLMHCLAG 66
                799**************98875 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.4
      AAA_22  76 eell.ealeqalrarav...ielliiDEaqh.lr..s.eealeeLrslln 117
                  el   + ++ + ara    + ++  DE    l+  s +e+l+ Lr+ ++
  KIR62266.1 151 AELSgGQQQRVAVARALitkPWVIFADEPTGnLDsrSgAEVLRLLREAVD 200
                 45554444444444444555557777776555765425777777777777 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   5.6e-05     0.063      31      54 ..      42      65 ..      34     143 .. 0.90
   2 ?    1.8   0.0      0.14   1.5e+02     161     188 ..     184     211 ..     175     217 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.6e-05
      AAA_25 31 pagelallaGapgtGKttlaldla 54
                +ag +++++G++g+GK+tl   la
  KIR62266.1 42 AAGRFTAIMGPSGSGKSTLMHCLA 65
                689***************987776 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.14
      AAA_25 161 snsdvgalvealeriarrtgaavllvhH 188
                 +++  ++++  l++  + +g +v++v H
  KIR62266.1 184 DSRSGAEVLRLLREAVDTLGQTVVMVTH 211
                 4555688999999999***********9 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.2   7.9e-05     0.088      18      49 ..      44      75 ..      23      85 .. 0.82
   2 ?    3.7   0.2     0.039        44      33      63 ..     190     220 ..     154     257 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.9e-05
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrv 49
                 r++++ Gp G+GK+t++  l+ + +   g+v
  KIR62266.1 44 GRFTAIMGPSGSGKSTLMHCLAGLDRPTAGTV 75
                35899**************9998887775555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.039
      AAA_30  33 talkalreaweaaggrviglAptgkaAkvLa 63 
                  +l+ lrea+++ g++v+++++  +aA    
  KIR62266.1 190 EVLRLLREAVDTLGQTVVMVTHDPTAASHAD 220
                 579999**************99999997655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00066      0.74       3      22 ..      48      67 ..      46      83 .. 0.81
   2 ?    4.3   0.0     0.038        42      85     157 ..     139     210 ..     133     221 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00066
      AAA_28  3 vitGgestGKTtlleaLaar 22
                +i+G++++GK+tl+  La  
  KIR62266.1 48 AIMGPSGSGKSTLMHCLAGL 67
                79*************99954 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.038
      AAA_28  85 tlaYarayggeaeaelea.aarekrydlvfllppapeidddgeRredleereaiderlrealrelgipviivps 157
                  +  a+++  + +ael   + ++   ++ ++++p+  + d  +   d +  +++ ++lrea+++lg  v+ v +
  KIR62266.1 139 AVGLADRLRHR-PAELSGgQQQRVAVARALITKPWVIFADEPTGNLDSRSGAEVLRLLREAVDTLGQTVVMV-T 210
                 55555566666.77777656666778889*****998845555567889999*****************999.4 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00011      0.12       4      33 ..      49     132 ..      47     249 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
      AAA_33   4 lvGlpGsGKstlaerllkklg....avllssdt..................................................l 33 
                 + G++GsGKstl + l+        +v++   +                                                  +
  KIR62266.1  49 IMGPSGSGKSTLMHCLAGLDRptagTVRIGDADtgglddrrltllrrdrigfvfqkfnllpaltaeenvvlplaiagrrpdpaW 132
                 57**********999863222345555554433466666666666555566555555555555555555555555555555554 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00042      0.47       2      21 ..      46      65 ..      45      67 .. 0.87
   2 ?    0.6   0.0      0.42   4.7e+02      91     138 ..     177     222 ..     132     248 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00042
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                  ++ G++GsGK+tL++ la
  KIR62266.1 46 FTAIMGPSGSGKSTLMHCLA 65
                56899***********9876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.42
                 TT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTT CS
       NACHT  91 DelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeq 138
                 De    l+    ++v +lL+e +    l ++ +++t  p+a +++ + 
  KIR62266.1 177 DEPTGNLDSRSGAEVLRLLREAVDT--LGQTVVMVTHDPTAASHADRV 222
                 5555555555566788888888888..888888888888888776554 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0004      0.45       6      22 ..      48      64 ..      44      91 .. 0.82
   2 ?   -0.3   0.0      0.65   7.3e+02     109     131 ..     189     212 ..     185     223 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0004
      AAA_24  6 liyGpsgiGKTtlakel 22
                +i+Gpsg+GK+tl+  l
  KIR62266.1 48 AIMGPSGSGKSTLMHCL 64
                79***********9877 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.65
      AAA_24 109 eefrrllkk.lqelrknvifiahe 131
                 +e+ rll+  ++ l+++v+++ h 
  KIR62266.1 189 AEVLRLLREaVDTLGQTVVMVTHD 212
                 688888888788899999999986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00039      0.43       3      21 ..      48      66 ..      46      96 .. 0.85
   2 ?   -1.2   0.0       1.9   2.1e+03      65      86 ..     208     229 ..     165     252 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00039
                EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                ai+G + +GKStL+  l g
  KIR62266.1 48 AIMGPSGSGKSTLMHCLAG 66
                8*************99987 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.9
                 HHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  65 glgkaflaleeadlillvvdas 86 
                 +++++  a   ad ++++ d +
  KIR62266.1 208 MVTHDPTAASHADRVVFLADGR 229
                 4555555556677788877744 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00028      0.32      17      43 ..      38      64 ..      32      66 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
       DUF87 17 dlnklvtrHlAilgsTGsGKSntvavL 43
                d++ +  r +Ai+g +GsGKS+++  L
  KIR62266.1 38 DVDFAAGRFTAIMGPSGSGKSTLMHCL 64
                6666667889*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 1916.36
//
Query:       KIR62267.1  [L=818]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-17   62.2  16.8    8.7e-11   42.1   4.7    6.4  7  FtsX      FtsX-like permease family
    9.6e-15   55.4  24.9    6.5e-10   39.7  10.1    5.0  5  MacB_PCD  MacB-like periplasmic core domain


Domain annotation for each model (and alignments):
>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.19   1.7e+03      20      39 ..       8      27 ..       2      43 .. 0.61
   2 ?   -1.4   2.2      0.36   3.3e+03      24      49 ..     245     267 ..     239     273 .. 0.48
   3 !   34.7   4.2   2.1e-12   1.9e-08       4      94 ..     276     367 ..     273     369 .. 0.92
   4 ?   -2.7   1.3      0.98   8.8e+03      64      66 ..     416     418 ..     388     457 .. 0.49
   5 ?    3.2   0.1     0.014   1.2e+02      21      47 ..     468     494 ..     462     509 .. 0.79
   6 ?    2.0   0.4     0.033     3e+02      27      48 ..     688     709 ..     657     717 .. 0.60
   7 !   42.1   4.7   9.7e-15   8.7e-11       2      93 ..     720     809 ..     719     812 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.19
        FtsX 20 lllteillitlvalviGlgl 39
                lll+ ++++  va+v+G+++
  KIR62267.1  8 LLLSALAVVLGVAFVAGTLI 27
                44444444444444444333 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.36
        FtsX  24 eillitlvalviGlglgllaaqllsd 49 
                  +l +++va v++   g+++a+ +  
  KIR62267.1 245 LLLTFAAVAVVVA---GFVIANTFAI 267
                 3333344444444...6666655443 PP

  == domain 3  score: 34.7 bits;  conditional E-value: 2.1e-12
        FtsX   4 igilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfs.selkisidlitvliiivlllllallagllsiskilkk 94 
                  ++lr +G++++qvl+  l+e+++++l a+++G+++g+ +a  l ++l ++ +      i +   tvl++++l+++l+++++++++++ ++ 
  KIR62267.1 276 TALLRLVGATRGQVLRATLLEAAATGLAASALGVAVGAGVAVGLDALLAAFDVPmAGGGIAVTARTVLVCLLLGTVLTVASAAVPAWRGTRV 367
                 589****************************************888888885557999******************************9886 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 0.98
        FtsX  64 idl 66 
                   +
  KIR62267.1 416 AAG 418
                 222 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.014
        FtsX  21 llteillitlvalviGlglgllaaqll 47 
                   t ++l++ ++lv+++++g+  a+++
  KIR62267.1 468 AATATALVIGIGLVSAFVVGAGSAKAS 494
                 566677888888888888888888775 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.033
        FtsX  27 litlvalviGlglgllaaqlls 48 
                 ++++v +++Gl++ +++  + +
  KIR62267.1 688 VLAFVVALLGLAVVIALVGVAN 709
                 3444444444444444444444 PP

  == domain 7  score: 42.1 bits;  conditional E-value: 9.7e-15
        FtsX   2 reigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiskilk 93 
                 re ++lra+G+++++++ +l +e++l +lv++v+G+glg+ +    ++v+     s+e ++ +++  + +ii++++l al+a++l+++++l 
  KIR62267.1 720 RENAVLRAVGLTRGRMRAMLAVEAALMALVGAVLGVGLGIGVGAGAMAVVTRL--SGEFTLVLPWGRLGLIIAVAVLAALAASVLPARRALA 809
                 899******************************************99999998..59*******************************9975 PP

>> MacB_PCD  MacB-like periplasmic core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7  10.1   7.2e-14   6.5e-10       2     194 ..       9     213 ..       8     214 .. 0.70
   2 ?   -2.8   2.6      0.79     7e+03       5      21 ..     306     322 ..     243     420 .. 0.61
   3 !   30.5   6.8   4.6e-11   4.1e-07       3     194 ..     469     661 ..     467     662 .. 0.61
   4 ?   -2.1   8.8      0.48   4.3e+03       5      43 ..     691     729 ..     687     787 .. 0.53
   5 ?   -4.0   4.2       1.8   1.6e+04       4      25 ..     751     772 ..     744     804 .. 0.71

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 7.2e-14
    MacB_PCD   2 lltvLGiaiGvaaviaivslgeglqasvlsqisdlgnlvtvtpgkgsgeslsdpdvealrrevp.veavapvv.....tvrgggsg..eeevtvvgvd. 91 
                 ll+ L++++Gva+v ++++l++g+++   ++    ++   v ++ + +++++ ++ve++r +v+ v+a+a ++     +      g  ++ v  ++v+ 
  KIR62267.1   9 LLSALAVVLGVAFVAGTLILTDGMKRRAYESAGVFDRHTDVAVY-AGRDPIPPALVERVR-AVDgVRAAAGELtgsagV--V---GsdGRPVLGYAVAa 100
                 799**********************9999988766775557666.457889999997664.577799999987554321..2...12233455555551 PP

    MacB_PCD  92 ..pdyfkvfglklaeGrffteadlrggpnvvvigeelaer.lfpvGdtirl.......kpftVvGvled.ppgsgsalgddavylp.......lttlqr 172
                   p+++ + ++++++Gr+ +     ++p++vv+++ +  +  f +G  +r+       + +t vG + d   g++ + g +++ l         ++  +
  KIR62267.1 101 aiPTEAALQSYDVVAGRL-P-----QRPGEVVLDAPTVAEeGFTLGGPVRVgggggaaRAYTLVGTV-DvA-GTARDVGGPFIGLAgpdalavTQQEGY 191
                 223555577777788985.3.....48999****9877662449*************9999*99998.524.666666655555533244221121124 PP

    MacB_PCD 173 rsitvrlkdgadleaaaaelek 194
                   i+v +++g++++++a ++ +
  KIR62267.1 192 GRIMVAAAPGVSAAELAGRVAA 213
                 55*************9988865 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.79
    MacB_PCD   5 vLGiaiGvaaviaivsl 21 
                  LG+a+G ++ +++ +l
  KIR62267.1 306 ALGVAVGAGVAVGLDAL 322
                 33333333333333332 PP

  == domain 3  score: 30.5 bits;  conditional E-value: 4.6e-11
    MacB_PCD   3 ltvLGiaiGvaaviaivslgeglqasvlsqisdl.gnlvtvtpgkgsgeslsdpdvealrrevpveavapvvtvrgggsgeeevtvvgvdpdyfkvfgl 100
                  t  +++iG++ v+a+v+   +++as+++ +    g    v +  g g+ l+ p+v++l+++ +  +v+ +   rg+            + d  +++  
  KIR62267.1 469 ATATALVIGIGLVSAFVVGAGSAKASIERAVDRQiGVD-FVVV--GVGGKLPGPLVDELAAR-DELGVVHEQ--RGRV-----------S-DAVELRAA 549
                 68899999999999988888888888888777444422.2334..44567899999866321.222344431..2222...........2.23333333 PP

    MacB_PCD 101 kl.aeGrffteadlrg....gpnvvvigeelaerlf.pvGdtirl..kpftVvGvled.pp...gsgsalg.............ddavylplttlqrrs 174
                 ++ + Gr++t+ d+ +    gp+ v++ +ela+++   vGd+++l  +pftV++v+ +  p   g     g             d++ ++p+++     
  KIR62267.1 550 HPaLVGRTLTAVDAGDagrlGPGRVLVHRELARARGwSVGDSVTLagRPFTVAAVVAAdGPalaG-----GpvpaghvvdvadaDFDRLFPAERG--FL 641
                 33255888877444433445999***********99*******************8552223442.....2232222333434444444444422..33 PP

    MacB_PCD 175 itvrlkdgadleaaaaelek 194
                   v  + g+++e a+a++e 
  KIR62267.1 642 AEVDPAAGVSAERARAAVES 661
                 55556669999999999885 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.48
    MacB_PCD   5 vLGiaiGvaaviaivslgeglqasvlsqisdlgnlvtvt 43 
                  +   +G a+via+v++ ++l+ sv ++ ++++ l  v 
  KIR62267.1 691 FVVALLGLAVVIALVGVANTLSLSVVERTRENAVLRAVG 729
                 555679*********************998554322232 PP

  == domain 5  score: -4.0 bits;  conditional E-value: 1.8
    MacB_PCD   4 tvLGiaiGvaaviaivslgegl 25 
                 +vLG+ +G+++  + +++++ l
  KIR62267.1 751 AVLGVGLGIGVGAGAMAVVTRL 772
                 6777777777766666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       983  (0.0548274); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.46
# Mc/sec: 5401.30
//
Query:       KIR62268.1  [L=140]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-28   96.4   0.8    8.4e-28   96.1   0.8    1.1  1  DUF1622   Protein of unknown function (DUF1622)
  ------ inclusion threshold ------
       0.12   11.9   0.1       0.15   11.6   0.1    1.1  1  DUF3598   Domain of unknown function (DUF3598)


Domain annotation for each model (and alignments):
>> DUF1622  Protein of unknown function (DUF1622)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.8   9.4e-32   8.4e-28       1      78 []      24     101 ..      24     101 .. 0.99

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 9.4e-32
     DUF1622   1 GvlvalikflkselrkkaaeayeeiRleLgrsllLgLeflvaadIlkTvvaptledigvLaaivliRtvLsyfLekEi 78 
                 G+++a ++f+ + lr+++a  ++ iRl+Lgr+l LgLef++aadIl+T+v+pt+++ig+Laai+ iRt+L++fL++Ei
  KIR62268.1  24 GAVWAALRFVAEGLRHRSAAVFTPIRLTLGRFLTLGLEFQLAADILRTAVSPTFDQIGKLAAIATIRTALNFFLRREI 101
                 8999*************************************************************************8 PP

>> DUF3598  Domain of unknown function (DUF3598)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.6e-05      0.15      85     134 ..      46      95 ..      37     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.6e-05
                 EEE-SB-CTTC-SEEEEEEEETTEEEEEEEEE-TTS-EEEEEEEEEEETT CS
     DUF3598  85 sqgslqlapfsefgaElgfieedrRlrlvqlYdkdgnLekltlIrEklag 134
                   ++l+l+ f ++g E+ + ++  R+ +   +d+ g+L+++ +Ir  l+ 
  KIR62268.1  46 TPIRLTLGRFLTLGLEFQLAADILRTAVSPTFDQIGKLAAIATIRTALNF 95 
                 567889999***********************************977765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1068.68
//
Query:       KIR62269.1  [L=595]
Description: hypothetical protein TK50_30305 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-46  156.8   0.0      2e-45  154.8   0.0    2.0  2  DUF4012   Protein of unknown function (DUF4012)
     0.0081   15.9   0.5      0.017   14.9   0.5    1.6  1  TPR_21    Tetratricopeptide repeat-like domain
  ------ inclusion threshold ------
      0.022   13.6   1.1      0.035   12.9   1.1    1.3  1  PAP_PilO  Pilin accessory protein (PilO)
       0.25   11.3   0.0       0.44   10.5   0.0    1.4  1  DENN      DENN (AEX-3) domain
       0.79   10.2   3.3          3    8.4   0.1    3.0  2  BMFP      Membrane fusogenic activity


Domain annotation for each model (and alignments):
>> DUF4012  Protein of unknown function (DUF4012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.76   2.7e+03      55      94 ..     160     199 ..     144     213 .. 0.61
   2 !  154.8   0.0   5.4e-49     2e-45       2     144 .]     222     363 ..     221     363 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.76
     DUF4012  55 lpltpeeaalygerlglylrdanltpdfpraaelakelwe 94 
                 l +t++  ++  +rl++++ da + p  + +ael k+l +
  KIR62269.1 160 LTATDQVVQRTHARLAAVPTDALVAPVRDAVAELRKQLDQ 199
                 3355555555666666777777777777777777666655 PP

  == domain 2  score: 154.8 bits;  conditional E-value: 5.4e-49
     DUF4012   2 gprtYLvlaqnnaElRatgGlvgavglltvdnGklelgdqasaadlsvkktpvlpltpeeaalygerlglylrdanltpdfpraaelakelweaqtggk 100
                 gpr+YL++ qn+aElRatgG++ga++++++++G+l+ g q+++a+l    +p l+l+pe ++ly++ +g y++d+nltp+fp+aa+l++++++++tg++
  KIR62269.1 222 GPRSYLMVSQNPAELRATGGMFGAYVVIEAKDGQLRTGTQGTSAQL-GLFDPPLKLKPEIRNLYTDLPGMYPADVNLTPHFPTAAALFRQMYRERTGDT 319
                 9*********************************************.7889999******************************************99* PP

     DUF4012 101 vDgviavdpvalsalleatGpvtlpdgevltadnavelllsdvY 144
                 vDgv+avdpv+ls+ll++tGpv +p  ++l +d av++llsd+Y
  KIR62269.1 320 VDGVLAVDPVVLSYLLKVTGPVPVPGHTTLVGDKAVRTLLSDAY 363
                 *******************************************9 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.5   4.6e-06     0.017      10     123 ..      30     142 ..      22     178 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.6e-06
      TPR_21  10 lilvgvvlalvglaGwqgwqdyqeeqaeeAsalYqqlqeaveakdaakakeaaeeladeyggtaYaal.aaLllAkaaveagdlaaAkaqLewvlekak 107
                 l++  ++l  +g++G++gwq   +++  +A+al qql ++v + d+++a++  ++l+ + g    a       + ++   ag+  +A  q+  v+++ +
  KIR62269.1  30 LVVGSLALLSAGWVGFRGWQA--RTHLLNAAALAQQLSSEVVSADTERAQRTLSALQVQAGAARDATDdLGWRAGQHTPFAGNDLTAVRQIAVVIDDLA 126
                 345555666666666666664..56778999*********************99999887765433220122233333333333455566666666666 PP

      TPR_21 108 deelkalarlRLarvl 123
                  e++ +l r  L  +l
  KIR62269.1 127 REAFPTLLRTDLSTLL 142
                 6666666666666655 PP

>> PAP_PilO  Pilin accessory protein (PilO)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.1   9.7e-06     0.035     145     205 ..       6      67 ..       1      83 [. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.7e-06
    PAP_PilO 145 lkksrlsrrlrs.vlskaeiallavalvls.llilgGlvgWrlyeakkeaeaqaalaeavevq 205
                  +++ ++rr r   + +a++alla ++v s +l+ +G+vg+r+++a+   +++aala+++  +
  KIR62269.1   6 QPRR-RGRRSRRrARARARRALLAGLVVGSlALLSAGWVGFRGWQARTHLLNAAALAQQLSSE 67 
                 4444.455555556678888888866665415668*********************9998765 PP

>> DENN  DENN (AEX-3) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00012      0.44      13     118 ..     299     416 ..     295     421 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
        DENN  13 pffelfkkiLkalekrlksssk..eaplesfianlllev..plPapgktlklvs.....laveekillqrpedsel.Pl.edvdlkelf.rcLsienil 99 
                 p+f +   +++++++ ++ ++    + + +++ + ll+v  p+P pg+t  +       l  +  + +   e++e+      + + ++f r ++++  l
  KIR62269.1 299 PHFPTAAALFRQMYRERTGDTVdgVLAVDPVVLSYLLKVtgPVPVPGHTTLVGDkavrtLLSDAYQRMDAVEQDEFfAAsATAAFDTFFtREVDPRAYL 397
                 5666667777777777777766664445555555554442266667777666553333322222233333334444222366677777635799***** PP

        DENN 100 qlfeavLlErriillSekl 118
                 +++  +++Err+++ S ++
  KIR62269.1 398 SVLDRAITERRVLFWSAHP 416
                 ****************997 PP

>> BMFP  Membrane fusogenic activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.7      0.24   8.5e+02      56      75 ..     181     200 ..     158     202 .. 0.73
   2 ?    8.4   0.1   0.00084         3      30      55 ..     353     378 ..     350     383 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.24
        BMFP  56 evlartrekleaLearvaaL 75 
                 +++a  r+++++L++++++L
  KIR62269.1 181 ALVAPVRDAVAELRKQLDQL 200
                 45566677777888887777 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00084
        BMFP  30 knvravlqealsklDLVtREEFdvqr 55 
                 k+vr  l  a++++D V  +EF + +
  KIR62269.1 353 KAVRTLLSDAYQRMDAVEQDEFFAAS 378
                 89********************6655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.38
# Mc/sec: 4654.54
//
Query:       KIR62270.1  [L=483]
Description: major facilitator transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-54  185.1  52.4    6.1e-38  130.6  22.3    2.2  2  MFS_1            Major Facilitator Superfamily
    1.2e-06   27.2   9.0    1.2e-06   27.2   9.0    2.3  2  TRI12            Fungal trichothecene efflux pump (TRI12)
      5e-05   22.3   7.7    0.00026   20.0   1.5    2.3  2  MFS_1_like       MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6  22.3     1e-41   6.1e-38       2     211 ..      28     246 ..      27     280 .. 0.83
   2 !   60.3  22.1   2.5e-20   1.5e-16       3     175 ..     288     475 ..     286     482 .. 0.79

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 1e-41
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 l+aaf++ l+ si+++a+p  + ++lg++ps ++++l++yal++++  +p+Gr++d  Grr  +++g++lf l+++l+ + ++++ +l+++r+lqG++a
  KIR62270.1  28 LVAAFMTLLDVSIVNVAVP-SIDRALGATPSDLQWVLSGYALTFGLVLVPAGRFGDARGRRTAFVVGIALFTLTSALAGL-AQSPgWLVAARLLQGVAA 124
                 5799***************.9*****************************************************666666.89999************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrkspkeee...... 188
                 g+++p +  li ++f ++ergr +gll+a++++++++gpllggll++++g    Wr+vf+++ +v+++a+vl++ llp+ p   +  +  +        
  KIR62270.1 125 GIVNPQVTGLIQQLFQGPERGRPFGLLGATIGISTAIGPLLGGLLIQAGGeqdgWRWVFFVNVPVGIVAIVLGWRLLPAQPAGAAQGRRLDPVgvlllg 223
                 **********************************************9999*********************9777777777777666666664666555 PP

       MFS_1 189 ..kgtgpaplvpawkallkdpvlw..i 211
                   +  +  plv+  ++ +++p  w  +
  KIR62270.1 224 vgVVLVLLPLVQ--REQWHSP--WkwL 246
                 443333333333..4444444..3221 PP

  == domain 2  score: 60.3 bits;  conditional E-value: 2.5e-20
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa......sslw.lllvlrv 93 
                 l+a+l++ ++++++++l+l+l++ lg+ p ++gl++t +alg+a+as ++Gr++dr+Gr   + +gll+ +lg l ++ f+       s++ l++v  +
  KIR62270.1 288 LIALLYFGGFTAIFFVLTLYLQNGLGYRPLVAGLAITPFALGSAAASAVGGRIVDRYGRPL-VATGLLVVLLG-LGAVvFVlrgdprGSVPlLMAVPLL 384
                 788999999************************************************6555.55555555555.3333233345778999*99****** PP

       MFS_1  94 lqGlgagalfpagaaliadwfpkeergraigllsagfslGailg.pllggllasslg.....Wrav.....fyilaivsllafvlfllllpee 175
                 ++Glg+g++++  ++l+ + +p ++ g+a g+l++g  +G++ g +++g++l s+l      W+ +      ++++i+sl +  +++l+ ++ 
  KIR62270.1 385 VAGLGSGLVITPNQTLTLAQVPVPQAGSAAGMLQTGQRIGSAAGiAAVGSVLFSALAgsggdWSPAvrhalLLAIGIISLGL--FAALFDRRH 475
                 ********************************************88888888844444898965444442355555555555..434554444 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   9.0   2.1e-10   1.2e-06      64     306 ..      42     278 ..      20     310 .. 0.72
   2 !    3.4   0.3    0.0034        20      82     121 ..     321     359 ..     318     391 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 2.1e-10
       TRI12  64 asalpnilqdvgq..sensslfstlwttgqavsilvmgrltdrfgrr.pfvilthilglvgaivgctatkfntllaamtllgvaagpagas.plfvgel 158
                   a+p i + +g   s+ + ++s  +++   + ++  gr+ d  grr  fv+   ++ l  a+ g  a+    l+aa  l gvaag        ++ +l
  KIR62270.1  42 NVAVPSIDRALGAtpSDLQWVLSG-YALTFGLVLVPAGRFGDARGRRtAFVVGIALFTLTSALAGL-AQSPGWLVAARLLQGVAAGIVNPQvTGLIQQL 138
                 456777777777611233333333.344444556678********9945999999*******9997.667789*************8765415577888 PP

       TRI12 159 ms..nktkflgllivsipvvvtsglspylg....qrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhgkkvrkreelakldwigiilvivgv 251
                 +   ++ + +gll  +i +  t +++p lg    q    q  wrw+f++ + +  +a++l   w   p+  q  g    +     +ld +g++l+ vgv
  KIR62270.1 139 FQgpERGRPFGLLGATIGI-ST-AIGPLLGglliQAGGEQDGWRWVFFVNVPVGIVAIVL--GWRLLPA--QPAGAAQGR-----RLDPVGVLLLGVGV 226
                 7633577889999776654.33.3677777111144456778*******99998877655..6888774..666654444.....69************ PP

       TRI12 252 slfllgvswggkpnspwnsakviglissglgslvvfalyev.ygkpvrpivppalf 306
                  l+ll +    +  spw+      l+ +gl  l  f l+e  y +   p+    lf
  KIR62270.1 227 VLVLLPLVQREQWHSPWKW----LLVPAGLAVLAAFGLWERrYARRGAPLFDLRLF 278
                 ****************975....478999999999999984377777777666665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0034
       TRI12  82 lfstlwttgqavsilvmgrltdrfgrrpfvilthilglvg 121
                 l  t +++g a +  v gr+ dr+gr p+v    ++ l+g
  KIR62270.1 321 LAITPFALGSAAASAVGGRIVDRYGR-PLVATGLLVVLLG 359
                 666788999****************6.8876655555543 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   1.5   4.4e-08   0.00026     295     382 ..      88     178 ..      72     181 .. 0.83
   2 !    5.6   0.5     0.001         6       9      73 ..     291     359 ..     285     382 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.4e-08
  MFS_1_like 295 iallayilrfllyaii....enawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaifl 382
                 +a+++ i+ f l +++    +++ +++ + +L+g++ g++   ++  +++++    +++  gll ++ +g+ +a+G l+GGll++  + ++ 
  KIR62270.1  88 TAFVVGIALFTLTSALaglaQSPGWLVAARLLQGVAAGIVNPQVTGLIQQLFQGPERGRPFGLLGAT-IGISTAIGPLLGGLLIQAGGEQDG 178
                 45555555555555555555*******************************************9766.9***************98887665 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.001
  MFS_1_like   9 FfffaalgsllPYltiylk.skglkaseigiitlilpltsilsppiwgvlaDrfgkrkk...vvilsll 73 
                 +++f+ + +++  lt+yl+   g+ +   g+  +   l s +++ + g ++Dr+g+      ++++ l 
  KIR62270.1 291 LLYFGGFTAIFFVLTLYLQnGLGYRPLVAGLAITPFALGSAAASAVGGRIVDRYGRPLVatgLLVVLLG 359
                 578888888888888888845677777778777777778888888888888888875443333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 2958.13
//
Query:       KIR62271.1  [L=78]
Description: hypothetical protein TK50_30320 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0097   16.1   0.0      0.012   15.8   0.0    1.2  1  Rio2_N    Rio2, N-terminal
  ------ inclusion threshold ------
       0.12   12.2   0.1       0.69    9.8   0.1    1.9  1  TrmB      Sugar-specific transcriptional regulator TrmB
       0.15   11.7   0.0       0.18   11.5   0.0    1.1  1  DUF4423   Domain of unknown function (DUF4423)


Domain annotation for each model (and alignments):
>> Rio2_N  Rio2, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     2e-06     0.012      24      63 ..      26      65 ..       4      69 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2e-06
      Rio2_N 24 vVptelieeisrlkeeevkkrlsrllkaklisrktakydG 63
                v   +li++ s+l+eeev+  l+ l +++l++r++ +  G
  KIR62271.1 26 VPYPDLIAQESGLTEEEVHAPLRLLTEKNLLHREDSPMAG 65
                444589***************************9999888 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00012      0.69       5      57 ..       5      61 ..       1      71 [. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00012
                HHHHHCCCHCHHHH...HHCCC.HHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB  5 GLseyEakvYlaLl...klgpa.tadeiaeelgvprskvYevLrsLedkGlVerekg 57
                 Ls+ E +vY a+     +g+    d ia+e+g+ +  v   Lr L +k l +re++
  KIR62271.1  5 RLSDVEERVYEAVAaleIRGQVpYPDLIAQESGLTEEEVHAPLRLLTEKNLLHREDS 61
                588999999999885543444314577999999999999999999999999999865 PP

>> DUF4423  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     3e-05      0.18      25      72 ..      16      60 ..       5      63 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3e-05
     DUF4423 25 virellplkdfkadpeelakrlrpkisaeevekalefLlklgllkkde 72
                ++ + l+++   + p+ +a+  +  +++eev++ l++L++ +ll+++ 
  KIR62271.1 16 AVAA-LEIRGQVPYPDLIAQESG--LTEEEVHAPLRLLTEKNLLHRED 60
                5554.677777789999******..********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 593.17
//
Query:       KIR62272.1  [L=247]
Description: polysaccharide deacetylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-27   94.9   0.0    5.3e-27   94.2   0.0    1.4  1  Polysacc_deac_1  Polysaccharide deacetylase
  ------ inclusion threshold ------
      0.024   14.2   0.0      0.034   13.6   0.0    1.2  1  nec1             Virulence protein nec1


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.0   5.9e-31   5.3e-27       5     122 ..      49     167 ..      45     169 .. 0.95

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 5.9e-31
                      TSTEEEEEEEESS.CSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHHHHHHHHHHHS-- CS
  Polysacc_deac_1   5 gkksvalTfDdgp.rdntteilpvLkkykvkatffvigglvedypdevremaasGveignHtinhsnlkrlseeevrreierakdalrkalgre 97 
                       +  +alTfDdgp ++ t+++l+vL+++  +atffv+g++  + p ++  ++a+G+e++ H+++h nl    +    r+++ra+  +++ +gr 
       KIR62272.1  49 RPGRIALTFDDGPdPESTPRFLDVLAEHRTRATFFVLGTMLVRSPWLAADLVAAGHEVAVHGWDHRNLLGRGPLATYRDLARARALVEATTGRA 142
                      56789********99************************9999999************************************************ PP

                      --EEE-GGGEE-HHHHHHHHHTT.E CS
  Polysacc_deac_1  98 prlfryPygsasatvlevarelgfa 122
                      pr fr+Pyg  +  +l + ++lg++
       KIR62272.1 143 PRFFRPPYGVLTGPALLASARLGLT 167
                      ************9999999999987 PP

>> nec1  Virulence protein nec1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.8e-06     0.034      46     151 ..      19     132 ..      10     145 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.8e-06
        nec1  46 anpsaafanstftavgycdtn.yqcaggsgsssrwsvnfddgptv.stidlhelyrdqsdtmssfrilgsvmsranh.......pnetvtihqqfyrdn 135
                 a   aa    t tavg +    +   gg+g   r ++ fddgp   st  + ++   +  t ++f +lg+++ r+             v++h   +r+ 
  KIR62272.1  19 AVALAAHLGPTTTAVGPVRRRlFPRLGGAGRPGRIALTFDDGPDPeSTPRFLDVLA-EHRTRATFFVLGTMLVRSPWlaadlvaAGHEVAVHGWDHRNL 116
                 34456777889999998876527789*****************8625655555554.5678999******99997541111111345678888888888 PP

        nec1 136 ggqvplgeyetrfras 151
                  g+ pl  y    ra 
  KIR62272.1 117 LGRGPLATYRDLARAR 132
                 8888888887766664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1724.47
//
Query:       KIR62273.1  [L=275]
Description: D-alanyl-D-alanine dipeptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-41  140.7   0.0    4.9e-21   75.4   0.0    2.0  2  Peptidase_M15  D-ala-D-ala dipeptidase
  ------ inclusion threshold ------
      0.015   15.1   3.1       0.41   10.4   0.1    2.7  2  VanY           D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M15  D-ala-D-ala dipeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   5.5e-25   4.9e-21       3     122 ..      48     172 ..      46     176 .. 0.95
   2 !   63.4   0.0   2.6e-21   2.3e-17     127     200 ..     202     270 ..     199     271 .. 0.96

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 5.5e-25
  Peptidase_M15   3 aglvdlaevladveidlkYatadnvtgk..alyqaariladkevalalaeaaavaaiagqqlvlwdayrpksaqdglllwavvPedklviekqvyq 96 
                    ag+vdl +v + v  d +Yata n++g+  a+y   ++l+++ +a+al+  +  a+++g  l ++d+yrp+ a+d +  wa  P ++  + + +++
     KIR62273.1  48 AGFVDLSDVDPTVVTDIRYATAHNFVGRpiAGYREPLCLLTRPAAEALRRVQQAARATGHRLKVYDCYRPQRAVDDFVDWAGRPGEQKMKAEFYPD 143
                    689********************************************************************************************9 PP

  Peptidase_M15  97 ieavenin...vatdsshsrgaaldltlr 122
                    + +  + +     +++ hsrg+++d+tl 
     KIR62273.1 144 VAKSRLFAdgyLGAPTAHSRGSTVDVTLV 172
                    9999988877778999***********98 PP

  == domain 2  score: 63.4 bits;  conditional E-value: 2.6e-21
  Peptidase_M15 127 elvdmGsefDelseRslatakqtvepaaqrnRklLraimesgGflsysgEWWHfelpdaasawlyddrylefav 200
                    + vdmG++fD ++ R++      +   a  nR lL   m  +Gf++y+ EWWH+   d++    y+d+y++f+v
     KIR62273.1 202 NSVDMGTGFDCFDPRAHTADRR-ITGVARDNRGLLVRLMADAGFTNYPREWWHYRYADEP----YPDTYFDFPV 270
                    579**************99999.*************************************....********87 PP

>> VanY  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   4.6e-05      0.41       4      37 ..      87     120 ..      85     173 .. 0.84
   2 ?    4.2   0.8    0.0038        34     117     131 ..     243     257 ..     205     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4.6e-05
                 EEHHHHHHHHHHHHHHHHTT--EEEEE----HHH CS
        VanY   4 lrkeaaealeellaaakkegielalvsgfRsver 37 
                 l++ aaeal++ ++aa++ g +l+++  +R  + 
  KIR62273.1  87 LTRPAAEALRRVQQAARATGHRLKVYDCYRPQRA 120
                 67789*************************8765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0038
                 HHHSS---TTEEEE- CS
        VanY 117 qetgvsyEpWHlrYv 131
                   t++  E WH+rY+
  KIR62273.1 243 GFTNYPREWWHYRYA 257
                 347788999*****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2099.93
//
Query:       KIR62274.1  [L=417]
Description: hypothetical protein TK50_30425 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-21   77.1  42.2    2.2e-15   56.5  39.6    2.0  2  MFS_1     Major Facilitator Superfamily
     0.0035   15.8  31.0     0.0044   15.5  31.0    1.2  1  MFS_3     Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5  39.6   2.4e-19   2.2e-15       4     323 ..       3     323 ..       1     328 [. 0.77
   2 !   30.8  10.5   1.6e-11   1.4e-07      37     187 ..     244     400 ..     217     415 .. 0.76

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 2.4e-19
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa...sslwlllvlrvlqGlga 99 
                 a+++s++++++ ++al  + + +l+ s+++ gl +++  ++ +++ ++ G l+ r+ r r+++ + +l+a++l+ll+ a   + l +l++l v+ G g+
  KIR62274.1   3 AHAVSTYGSYLNLVALG-LFTLELTGSAAQTGLFMAVRLAAGFLMGPVSGLLAGRYRRTRLMIGADVLSAATLALLVAApagARLAALYALAVVLGCGQ 100
                 67899999999******.88899999******************************7777************444443356788889************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee..kgtgpapl 196
                  +   a  + + d++ +++r+ra++ l a+ s++++lg + +g+l++ lg++++f++ a+ ++l++    ll +++++++   +p+  +  + tgp+++
  KIR62274.1 101 TLWGVALRSELPDLAGPQRRARANARLVAARSVAMLLGFASAGVLVAGLGYEVAFLLDAGTYALSAG---LLARVPARRPVAAAPEAAGpaAPTGPRAW 196
                 99999999*********************************************************77...55655555555555555545578888888 PP

       MFS_1 197 vpawkallkdpvlwillialllf.....ffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalg 290
                 +   + l++  ++    +++ ++     +fg ++  + +p+ +  v+  s + +a+++l   a+++++++ +++rl+ r+g       +++++ l++l 
  KIR62274.1 197 AG-VGVLRSVAPV----VVAMIGvraadAFGSAAHNVGIPVQASLVRPDSPAAYAAVFLTSWAVGSLAAGRWCARLAARTGQVGSPRAFGVATCLMSL- 289
                 88.8888888855....222222234456677778889999544444444446666666666666666688999999998874444444444444444. PP

       MFS_1 291 lallavtssavllllvlvl.iGfglgfvfpslla 323
                 +++la+t+ +++ll++l l +G + g + +s+++
  KIR62274.1 290 FFVLAFTDPPLWLLIPLTLaAGAADGYAEISYTT 323
                 4444555588999988777577799988888776 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 1.6e-11
       MFS_1  37 lltlyalga.avaslplGrlsdrf.......Grrrvlllglllfalglllllfa.sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigll 126
                 ++++++l++ av+sl +Gr+  r+       G+ r + ++  l++l+ ++l+f+ ++lwll+ l + +G++  +++ ++++   + + +++r+r +g++
  KIR62274.1 244 AYAAVFLTSwAVGSLAAGRWCARLaartgqvGSPRAFGVATCLMSLF-FVLAFTdPPLWLLIPLTLAAGAA-DGYAEISYTTRLQGVDESRRARLFGFA 340
                 55666666669999999***998877777778888888888888888.77777778888777777777776.69999999999999999********** PP

       MFS_1 127 sagfslGailg.pllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                 sa+ ++G+ lg  + +++l  ++ +++v +++++++++a+   +ll  + +p+ +r++p+++
  KIR62274.1 341 SAAQNAGFGLGmIGCSAALDRAAPFTVVAVAHGVACAVALA--FLLAQTVRPSDRRDPPADR 400
                 ***********4456666668888***************44..4666555555555555544 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5  31.0   4.9e-07    0.0044      18     321 ..       3     314 ..       1     401 [. 0.75

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.9e-07
       MFS_3  18 aslvsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiG 116
                 a  vs  G++++ va + +  +++ s ++  l  a      fl+  ++G la  + r ++++ + +l a  ++l+ ++aa       +l al++++g+G
  KIR62274.1   3 AHAVSTYGSYLNLVALGLFTLELTGSAAQTGLFMAVRLAAGFLMGPVSGLLAGRYRRTRLMIGADVLSA--ATLALLVAAPAGARLAALYALAVVLGCG 99 
                 7889*****************************99999999*********************9998755..4455555555667788999********* PP

       MFS_3 117 aalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsylalivallrwkrevrksslprEkllealr......a 209
                 ++l   a +  +++l   +    A a       +a   G A +Gvlva +G  +af ++a +y      l+r+  + +    p E    a        a
  KIR62274.1 100 QTLWGVALRSELPDLAGPQRRARANARLVAARSVAMLLGFASAGVLVAGLGYEVAFLLDAGTYALSAGLLARVPARRPVAAAP-EAAGPAAPtgprawA 197
                 ****************888888888777788899999**************************99988888887665555554.444444440111115 PP

       MFS_3 210 glRftaasreikavl..vRaa.lFglsasavlaLLPlvardqldgdalvy.GillgalGvGAilgalllsrLRerlsse...rlvllaavalAlvllsl 301
                 g+   ++  ++ +++  vRaa +Fg +a  v   +P+ a       +++y  ++l++  vG ++++   +rL +r ++    r   +a+  + l  ++l
  KIR62274.1 198 GVGVLRSVAPVVVAMigVRAAdAFGSAAHNV--GIPVQASLVRPDSPAAYaAVFLTSWAVGSLAAGRWCARLAARTGQVgspRAFGVATCLMSLF-FVL 293
                 5555555555555553346553566555554..579888776666666662589******************99876650004444554444444.456 PP

       MFS_3 302 ala.sslwvavlvlllgGaaW 321
                 a++ ++lw++++  l +Gaa 
  KIR62274.1 294 AFTdPPLWLLIPLTLAAGAAD 314
                 666267999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2824.89
//
Query:       KIR62275.1  [L=338]
Description: regulatory protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-44  150.9   1.3    7.8e-44  150.5   1.3    1.0  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   1.3   4.3e-48   7.8e-44      13     266 ..      38     326 ..      27     328 .. 0.87

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 4.3e-48
        TauD  13 gvdlsdleslddelkeelrellaeygvvvfrgfpl.speqqlefarrfGplygtpgrgtntkygevldvssvyesadianlayttllwHtDlsylespp 110
                 ++dl+ +  l  + ++el + l+ +g+v+frgf++ ++++++++ar++       + ++ + ++ev d+  + ++ ++ +      ++H+++sy +++p
  KIR62275.1  38 DLDLAGW--LAGR-RDELLRDLDAHGAVLFRGFEVaTADDFSRAARAVT-PDLLGYLERAAPRTEVADRVFTSTEFNAEQ----WIPLHHEMSYSHNWP 128
                 6777776..4444.55555555**************************5.555555888888888888333333344444....3346*********** PP

        TauD 111 giqlLhcleapa.tGGetpfvDgraaynaLpeelpell..egltavrvyyhyrg...............................gglrteqelpavdk 175
                  ++ ++c +++  +GG+tp+++ r +  ++p+  +e++  +g ++vr+y +  +                               +glrt+ +++av++
  KIR62275.1 129 THLYFWCAQPATgSGGATPLASERVVTPRIPAQVRERFtrDGVCYVRNYGPHLDlpwqeafqttdraeveaycaasateftwlggDGLRTRARRQAVAT 227
                 **********888************************************************************************************** PP

        TauD 176 hprtghpvvrthp........vltgrkallvn..p...pfatrieglgtpeskelldaleelledpeftyrfqwqeGdlvifdNrrvlHgrtafdegee 261
                 hprtg+  +++h         + ++ +all    p   p++++  g+g+p+ +e+++ +++l++  e+ ++++wq+Gd++++dN+   Hgr++f +g +
  KIR62275.1 228 HPRTGETFWFNHAhlfhssnlPAEVSAALLREygPeglPRNAYH-GDGSPIDDEVVAGIRDLYR--EHAVSVPWQRGDVLVVDNFLATHGREPF-SG-D 321
                 ****************9999976888888888763788999999.******************9..****************************.88.6 PP

        TauD 262 Rhllr 266
                 R +l+
  KIR62275.1 322 RQILV 326
                 65555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2155.88
//
Query:       KIR62276.1  [L=278]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-57  193.2   3.9    2.2e-56  191.0   3.9    2.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    5.6e-49  166.3   0.9      3e-48  163.9   0.9    1.8  1  adh_short     short chain dehydrogenase
    6.3e-10   39.3   0.5    9.4e-10   38.7   0.5    1.2  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.0   3.9   3.8e-60   2.2e-56       1     234 []      16     276 ..      16     276 .. 0.86

  Alignments for each domain:
  == domain 1  score: 191.0 bits;  conditional E-value: 3.8e-60
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGG...........H.HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGC CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlnee...........a.kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapkl 83 
                   Gaa+g+Gr +A ++a++Ga+vvl+dl  +           +  +++++l + +g ++  +e+DV+d ++v+a+v+ vv++fg++D+lvnnagia + 
    KIR62276.1  16 GAARGLGRSCAVTFAAQGADVVLVDLAGDlpgvpyplgsaSqLAHTADLCAGYGVAAypVEADVRDLAAVRAAVALVVARFGRVDVLVNNAGIAAPS 112
                   9************************9765222222211112245666777777766459************************************** PP

                   SS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHC.. CS
  adh_short_C2  84 kgpfletsreefdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikT.. 176
                    +p++e++++e++ +ldv+l + ++++ a+ ++m ++  gsivn++s+++ ++  + + y aaK++l++ltr++A +++p ++RvNa +pg ++   
    KIR62276.1 113 GKPTHEITEAEWQLMLDVDLSGPWRMISAVGEVMCRQrgGSIVNVASTAGLVGYRHFAGYVAAKHGLVGLTRAAALDYAPLRVRVNALCPGSVRDdp 209
                   ********************************7755446****************************************************987622 PP

                   ....TGGGGSTT.....HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 177 ....laasgikg.....fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                       ++ ++i++       e +e + + +p++ l++p  va+aal+Lasde++ +tG+++ vDgG+t
    KIR62276.1 210 hvegRMLAEIARslevpVAEHEETFVQAQPMNALIEPGAVAQAALWLASDESAQVTGSVITVDGGFT 276
                   2222466666665555566789999****************************************98 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.9   0.9   5.1e-52     3e-48       1     183 [.      10     206 ..      10     212 .. 0.92

  Alignments for each domain:
  == domain 1  score: 163.9 bits;  conditional E-value: 5.1e-52
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEES............CHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdr............seekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi 87 
                 k+++vtGa++G+Gr +a ++a++Ga+vv+vd             s+++l+++a+ +   g  a+++++Dv+d ++v+a+v+ +v+++g++dvLvnNAGi
  KIR62276.1  10 KTAIVTGAARGLGRSCAVTFAAQGADVVLVDLagdlpgvpyplgSASQLAHTADLCAGYGVAAYPVEADVRDLAAVRAAVALVVARFGRVDVLVNNAGI 108
                 79***************************997233333333333567888888888888**************************************** PP

                 ..S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS CS
   adh_short  88 ..tgsgpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvd 183
                      +p++e++e+ew+ +++v l g+  ++ av + m +q++G+Ivnv+S+ag+v++ ++a Y A+K++++gltr++a ++ap ++rvna++PG v+
  KIR62276.1 109 aaPSGKPTHEITEAEWQLMLDVDLSGPWRMISAVGEVMCRQRGGSIVNVASTAGLVGYRHFAGYVAAKHGLVGLTRAAALDYAPLRVRVNALCPGSVR 206
                 988899*****************************************************************************************986 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.5   1.6e-13   9.4e-10       3     154 ..      12     177 ..      10     189 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.6e-13
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS...........--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE----- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsa.........aadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvl 92 
                  ++tG++ gLG++ a + a++ga  +++    +          + ++ +++ + ++ +g+    v+aDv d +av+a+++ + a+++++   ++ Ag++
  KIR62276.1  12 AIVTGAARGLGRSCAVTFAAQGADVVLV-DLAGdlpgvpyplGSASQLAHTADLCAGYGVAAYPVEADVRDLAAVRAAVALVVARFGRVDVLVNNAGIA 109
                 69********************875543.33333479999765455555566666678****************************************9 PP

                 -..---TTT--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHH CS
          KR  93 r..dklleemtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNa 154
                 +   k+  e t+++++ +l   ++G w +  ++ +    ++   +v ++S agl+g ++ a Y aa +
  KIR62276.1 110 ApsGKPTHEITEAEWQLMLDVDLSGPWRMISAVGEvmcrQRGGSIVNVASTAGLVGYRHFAGYVAAKH 177
                 844689**********************999988877778999**********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1769.68
//
Query:       KIR62277.1  [L=795]
Description: hypothetical protein TK50_30480 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.8e-102  343.1   0.2   6.5e-101  338.0   0.2    2.1  1  AMP-binding    AMP-binding enzyme
      1e-13   51.4   0.0    2.7e-13   50.0   0.0    1.8  1  PP-binding     Phosphopantetheine attachment site
    4.2e-06   27.6   3.5    4.2e-06   27.6   3.5    3.4  3  AMP-binding_C  AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
       0.13   10.9   0.0        0.6    8.7   0.0    1.8  2  Condensation   Condensation domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.0   0.2  1.5e-104  6.5e-101       2     423 .]     205     592 ..     204     592 .. 0.90

  Alignments for each domain:
  == domain 1  score: 338.0 bits;  conditional E-value: 1.5e-104
                  HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE CS
  AMP-binding   2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli 99 
                  +++a+++pd++a+     gq+lTY++ld+r++r+A++L ++Gv +gdrV+++l++s++++++ll++l+aGa++vp++p+++ae+++y +eds++ +l+
   KIR62277.1 205 ARHARRRPDAPAVSC--AGQRLTYAQLDARATRVARALAAHGVAPGDRVGVCLDRSVDLIAVLLGVLRAGAAYVPVDPAYPAERIRYTVEDSGVALLV 300
                  6899*********88..9*********************99********************************************************* PP

                  ETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCS CS
  AMP-binding 100 atvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrf 197
                                 +          +d ++l        +++++++a   ee+++  pdd+ay+iYTSG+TG+PKGV + hrn++a v +     +f
   KIR62277.1 301 -G-------------G--------GGIDPAGL--------TAGPDDAA--GEEPAAGGPDDTAYVIYTSGSTGRPKGVCVPHRNVLALVDAT--AGDF 364
                  .2.............1........11232111........11122222..22455789******************************9996..4459 PP

                  CCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT-SEEEEESS- CS
  AMP-binding 198 klkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sgalkaakkakdlsslrlvllggep 294
                  +l++ dv+ ++ + a++f++ +e++++ll G+ +v++p+  +++p+ +++l+++++vtv++ +P+++ +ll+ +++ +      d  ++rlv++ggep
   KIR62277.1 365 GLGPADVWTMFHSSAFDFSV-WEIWGCLLTGGHLVVVPHLVTRSPQEFHALLAAERVTVLNQTPSAFAQLLDvDRRAA------DRLAVRLVVFGGEP 455
                  999****************8.*****************999999****************************665555......8899********** PP

                  EBHHHHHHHHHHHTC...EEEEEEEEGGGSSECEE..CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHH CS
  AMP-binding 295 lspellrffralfge...evlegYGlTEttgvvtv..lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeatae 387
                  l + +l+ + ++ +e   +v++++G TEtt++vt   l++    +   svG++lpg +v+++D++ g+++p+g  Ge++v+g+gv+ gYl +pe+ta+
   KIR62277.1 456 LDARMLTGWFDRHPErecRVVNMFGITETTVHVTAqtLDRGLALAGSRSVGRALPGWRVYVLDPD-GRLLPPGAAGEIHVGGAGVADGYLHRPELTAQ 552
                  ************99999****************7766555666677789***************9.******************************** PP

                  HEEE...T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 388 afds...e.grwlrTGDlgrldedGyleivgRkkdliklr 423
                  +f +     gr++r+GD grl +dG+le +gR++d++k+r
   KIR62277.1 553 RFRPdpwAgGRMYRSGDRGRLLPDGRLEHLGRLDDQVKVR 592
                  **977773467***************************96 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   6.1e-17   2.7e-13       1      67 []     728     791 ..     728     791 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 6.1e-17
  PP-binding   1 eklrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67 
                 e++r+++++vlg +   ++p++++fdlG++Slla++ll++l+++   +++++ l+ h+t++ la+++
  KIR62277.1 728 ERIRAVWQRVLGAE---VGPEDNFFDLGGNSLLALRLLNELRDQGLADLTPRHLYVHQTVRGLAEAI 791
                 689*********87...899************************777*****************986 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.3      0.39   1.7e+03       4      23 ..      40      59 ..      11      90 .. 0.62
   2 ?   -3.2   0.0         4   1.8e+04      31      53 ..     182     211 ..     180     217 .. 0.59
   3 !   27.6   3.5   9.4e-10   4.2e-06       1      76 []     600     701 ..     600     701 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.39
                   HHHHSSTTEEEEEEE----- CS
  AMP-binding_C  4 salvshpaVaeaaVvGvpde 23
                   ++l++  +V+ a V +v de
     KIR62277.1 40 AVLARYRGVRRARVGAVVDE 59
                   45555556666665555555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4
                    EEEEE---...---.....HHHHHHHHHHHH CS
  AMP-binding_C  31 afVvlkdg...sea.....leeeLkahvrke 53 
                    a+V l +g   + +     +++ + +h+r++
     KIR62277.1 182 AIVALGRGpggP-PpavdtIAHRVARHARRR 211
                    667773333332.134566778888888765 PP

  == domain 3  score: 27.6 bits;  conditional E-value: 9.4e-10
                    HHHHHHHSSTTEEEEEEE...-----TTS..---EEEEEE--........----...................HHHHHHHHHHHHT-TTTS-SEEE CS
  AMP-binding_C   1 evEsalvshpaVaeaaVv...GvpdevkG..ealvafVvlkd........gsea...................leeeLkahvrkelgpyavpkkvv 64 
                    e+ ++l+  p+V  +aVv   Gv         +l a+Vvl+d           a                     +e+++++++ l++y+vp +v 
     KIR62277.1 600 EIRQVLLDDPGVLAVAVVvqtGVE----SadTRLHAYVVLADpaaadaatA--AdaetaagtatavgaraatgALAEVRRRAARMLPDYMVPATVT 689
                    7899************99444444....44478******976444444440..14455666667778888899999******************** PP

                    E-S---B-TTS- CS
  AMP-binding_C  65 fvdelpktrsGK 76 
                    ++++lp+t +GK
     KIR62277.1 690 ALPALPLTGNGK 701
                    ***********9 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.08   3.6e+02     254     281 ..      33      60 ..      20      65 .. 0.86
   2 ?    8.7   0.0   0.00013       0.6     405     456 ..     132     183 ..     124     184 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.08
                   HHHHHHHHHHHHHHT-SEEEEEEEEESS CS
  Condensation 254 vllaalgllLskytgqddivvgteisgR 281
                    l aa+g++L +y g +++ vg ++  R
    KIR62277.1  33 ALVAAVGAVLARYRGVRRARVGAVVDER 60 
                   5899*******************99998 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00013
                   EEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC-----HHHHHHH CS
  Condensation 405 tikieYntslFdeetierflerlkelleqviehpeqklselkllsdaekekL 456
                   t++++ +t+ ++   +  f+++++++l qv+++p+ +l+  +l +dae++++
    KIR62277.1 132 TLTCHHRTAGWSGDLVAAFARQVVRVLGQVLADPDRPLAGHDLFDDAERAAI 183
                   6778889999**************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 5291.32
//
Query:       KIR62278.1  [L=256]
Description: molecular chaperone [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-14   54.4   0.0    4.4e-09   36.2   0.0    3.0  2  VTC       VTC domain


Domain annotation for each model (and alignments):
>> VTC  VTC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   2.4e-13   4.4e-09      30     115 ..      49     117 ..      15     137 .. 0.79
   2 !   11.6   0.0   7.5e-06      0.13     233     274 ..     189     227 ..     146     228 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 2.4e-13
                 --------------------EEEEEEE-TT-HHHHHHHHT-TT--EEEEEEES-GGG--EEEEEEEE--------EEEEEEEE-GG CS
         VTC  30 ygaseeeiaaallrksadqtitsvYfDnndfelyenrilkmegaekiRlRwygkldnedvflErktkheswtgesstkerftlkqk 115
                               ++ + +++svYfD++d+  y+    +++ + kiR R+y   d++ ++lE+kt     t++ + k r++ ++ 
  KIR62278.1  49 ID------------GRRSFRYESVYFDTPDLVSYRLTAHRRRRRFKIRTRTYV--DSDLCWLEVKTE---GTRGGTVKHRLPYHPG 117
                 44............678889********************************7..999*********...9999999*99998775 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 7.5e-06
                 SEEEEEEE------HHHHHHHTSTT-EE-TT--HHHHHHHHH CS
         VTC 233 yavlEvKlqtskspewiqeLlashlvievpkfSKYqhgvasl 274
                 +a++E K+ +    + +++Ll sh  ++v  +SKY +g+a+l
  KIR62278.1 189 LAIVETKTGS--TASHVDRLLWSHGHRPVA-VSKYATGLAAL 227
                 799****999..8889*************9.********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1667.46
//
Query:       KIR62279.1  [L=152]
Description: thioredoxin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-07   30.3   0.0    3.8e-07   30.0   0.0    1.1  1  Thioredoxin    Thioredoxin
    0.00012   22.0   0.1    0.00016   21.6   0.1    1.2  1  Thioredoxin_3  Thioredoxin domain
     0.0019   18.6   0.0      0.034   14.6   0.0    2.0  1  Thioredoxin_2  Thioredoxin-like domain
     0.0042   17.3   0.1     0.0072   16.5   0.1    1.3  1  Glutaredoxin   Glutaredoxin
     0.0079   16.4   0.0      0.012   15.8   0.0    1.3  1  Thioredoxin_7  Thioredoxin-like
  ------ inclusion threshold ------
      0.039   14.3   0.0       0.94    9.8   0.0    2.1  2  Thioredoxin_8  Thioredoxin-like
       0.26   11.4   0.1        4.1    7.5   0.1    2.0  2  Thioredoxin_4  Thioredoxin


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.5e-10   3.8e-07      21     101 ..      63     143 ..      54     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.5e-10
                  EEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEE.TTEEEEEEESS-HHHHHHHHH CS
  Thioredoxin  21 vlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfk.ngkevkkyegarekeklaafl 101
                   +v+F +  C++C+a   +le++  ++   v+l++vd++++ d +++++v   Pt++++  +g+ v + +g   +++l+a +
   KIR62279.1  63 TMVQFSSAVCAPCRATRRVLEQVEAAVP-GVVLVEVDAEQHLDAVRELDVWRTPTVLVVDpAGHVVLRASGVPVRDDLVAAV 143
                  68**************************.9*************************988861566888888888778887765 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   6.3e-08   0.00016       5      73 ..      65     141 ..      62     144 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 6.3e-08
                    E.ESSS.STTCHHHHHHHHHHCHCC.T.CECEEECCTTHHHHHHCT-SSSSEE.ECT..TCE..EEESS---CCHHHH CS
  Thioredoxin_3   5 v.lgpg.CakCpklekavkeaaaek.g.ikaevekvtdfeeiekygVmsvPal.vid..gkv..vvsGkvpseeeirk 73 
                    v +++  Ca C++++++++++ a   g + +ev+  ++++ + +  V ++P++ v+d  g v  ++sG vp ++++ +
     KIR62279.1  65 VqFSSAvCAPCRATRRVLEQVEAAVpGvVLVEVDAEQHLDAVRELDVWRTPTVlVVDpaGHVvlRASG-VPVRDDLVA 141
                    5555666*********999985555496778**********************999999665115678.887777665 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.3e-05     0.034       6      99 ..      61     133 ..      57     143 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-05
  Thioredoxin_2   6 kpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgk.eivarlpGy 99 
                      ++v f++  C  C++ +++l+++             ++++p +v +  ++e         ++ + +r+++v  tPt+++ d+   +v+r  G 
     KIR62279.1  61 AVTMVQFSSAVCAPCRATRRVLEQV-------------EAAVPGVVLVEVDAE---------QHLDAVRELDVWRTPTVLVVDPAgHVVLRASGV 133
                    5689999999999999999999999.............333333333333333.........47999***********99999998999998886 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   2.8e-06    0.0072       4      53 ..      67     117 ..      64     122 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.8e-06
                   EESTSSHHHHHHHHHHHHTTGG...EEEEEGCCSHHHHHHHHHHHTSSSSSEE CS
  Glutaredoxin   4 ftkptCpyCkkakrlLkelgvk...feeidvdkdeeireelkelsgvrtvPqv 53 
                   f++  C  C++++r+L++  ++   +  ++vd++ +  ++++el +v   P+v
    KIR62279.1  67 FSSAVCAPCRATRRVLEQVEAAvpgVVLVEVDAE-QHLDAVREL-DVWRTPTV 117
                   89999***********999955557899999996.888888888.55555555 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.7e-06     0.012      21      83 .]      64     122 ..      49     122 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.7e-06
                    EEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT---SSEEEEE-T CS
  Thioredoxin_7  21 lvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanileldeqgvPvvafldp 83 
                    +v f+++ c +C+a  r++++ e     +   +vl+ vd ++  + ++eld   +P+v+++dp
     KIR62279.1  64 MVQFSSAVCAPCRATRRVLEQVEA----AVPGVVLVEVDAEQHLDAVRELDVWRTPTVLVVDP 122
                    999***************999844....667**************998877666********9 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00037      0.94       2      47 ..      61     103 ..      60     109 .. 0.84
   2 ?    4.5   0.0     0.017        45      66      95 .]      97     126 ..      91     126 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00037
                    SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-H CS
  Thioredoxin_8   2 kvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkke 47 
                     v+++ f++  c+pc+a ++ l +++  +    +v++v v   + +
     KIR62279.1  61 AVTMVQFSSAVCAPCRATRRVLEQVEAAVP---GVVLVEVDAEQHL 103
                    5899*********************99996...8888888776655 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.017
                    E-TT-HHHHTT-S--TT-SEEEEE-TT-BE CS
  Thioredoxin_8  66 fddkkrnklkkkynvkaiPtlvvldkngev 95 
                    +d +++    ++++v   Pt++v+d+ g v
     KIR62279.1  97 VDAEQHLDAVRELDVWRTPTVLVVDPAGHV 126
                    5555555668899999**********9976 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0016       4.1       8      40 ..      55      87 ..      52      98 .. 0.83
   2 ?    2.1   0.0     0.077     2e+02     127     146 ..     100     119 ..      94     133 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0016
                   ES-TT-SEEEEEEE-TT-HHHHHHHHHHHHHHH CS
  Thioredoxin_4  8 iGnpdApvtvieyedlrCphCakfeeeveklle 40
                   +G+    vt++ +++  C  C++  + +e++ +
     KIR62279.1 55 LGARPGAVTMVQFSSAVCAPCRATRRVLEQVEA 87
                   57777789**************99888877655 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.077
                    HHHHHHHHHHT--SS-EEEE CS
  Thioredoxin_4 127 eaeskeakkagiestPtfii 146
                    e+ +  ++++++  tPt+++
     KIR62279.1 100 EQHLDAVRELDVWRTPTVLV 119
                    55666679**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 996.46
//
Query:       KIR62280.1  [L=510]
Description: iron ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-28   98.1  38.1    3.8e-15   56.1  15.4    2.7  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7  12.0     2e-17   3.5e-13       5     167 ..      67     228 ..      63     232 .. 0.81
   2 !   56.1  15.4   2.1e-19   3.8e-15       2     175 ..     321     491 ..     320     494 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 2e-17
  BPD_transp_1   5 Gilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilg.hlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   G+ aa    +   +++++l ++  ++l++P++v ++ +++     ++ g  +++++++ll++ + pyv+l   aalr  + +++e++r lG ++w +
    KIR62280.1  67 GVAAAflvARTDLPGRRALGVVAALPLAVPTYVAGFAWTA-----TVDGfEGFWAAALLLTVCSYPYVYLPAVAALRRADPGQEEVSRSLGRGPWAT 158
                   55555554599999***********************995.....5555579999****************************************** PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavll 167
                   ++ v+l+++ p +++g++l++ ++l ++ +++++  ++     ++ ++lg+d + +++ +++ +v+ vll
    KIR62280.1 159 LVGVTLRQIRPAVAAGALLVALYVLSDFGAVSIVRVDTFTRAIFTAFNLGFDRTGALVLSTVLVVLTVLL 228
                   ***********************************66545555666666666665543333333333333 PP

  == domain 2  score: 56.1 bits;  conditional E-value: 2.1e-19
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   ++lG+laa +  +++  +l +l++v  +lP +v+++ lv+++  +   l+++++ +++++++ ++p+++  +++a  + p   +eaar lG +++ +
    KIR62280.1 321 LPLGLLAA-RAPGPVATVLERLTYVAHALPGVVIGLSLVFFAvNVAYPLYQSVWLLALAYATLFLPLAVGAVASAAAQSPPAVEEAARSLGRGPFAV 416
                   89******.999***************************8776666667799999****************************************** PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadil 175
                   fr+v+lP++lp i +g++l+f   +++  ++++l    + g+ +l ++l+  +s +++++++ +++++++l +v  +l
    KIR62280.1 417 FRTVTLPLTLPGIGAGAALTFLTCMKELPATLLLR---PTGMDTLATELWTHTSTAAYAAAAPYAALLVALAAVPTWL 491
                   ***********************************...6999999999999999888666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3612.37
//
Query:       KIR62281.1  [L=414]
Description: transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-33  114.9  43.1    3.8e-33  114.9  43.1    1.7  2  MFS_1          Major Facilitator Superfamily
    8.9e-10   38.0   4.0    1.8e-09   37.0   4.0    1.5  1  MFS_1_like     MFS_1 like family
    0.00049   19.2   1.7    0.00049   19.2   1.7    2.5  3  Nuc_H_symport  Nucleoside H+ symporter
  ------ inclusion threshold ------
        0.4    9.4   5.5       0.03   13.1   0.9    1.5  2  LacY_symp      LacY proton/sugar symporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9  43.1   8.4e-37   3.8e-33      10     352 ..      26     357 ..      17     358 .. 0.83
   2 ?   -0.7   0.1      0.12   5.2e+02     150     180 ..     373     403 ..     365     413 .. 0.56

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 8.4e-37
       MFS_1  10 larsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllvlrvlqGlgagalfpag 106
                  ++++l+p l  +la+dlg+s+++igl+l++  l +  + l++G+ sdr+G+r v+++g +l a+g  +++fa   sl++ll++ vl+Gl++++++pa+
  KIR62281.1  26 VGFYMLLPYLAGYLADDLGLSAAVIGLVLGVRNLSQQGMFLLGGSASDRLGARGVIIVGCALRAVG--FGVFAvgVSLPALLAASVLSGLAGALFNPAV 122
                 578899999988******************************************************..33333348888******************** PP

       MFS_1 107 aaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallk 205
                  a++a+ +p+ +r+ a++l+++++s+G++lgpl+g++l+ ++ +ra+ +++a+v++ + v  +l+lp  p +++ +    +            w++ ++
  KIR62281.1 123 RAYLAQAAPD-RRAEAFALFNVFASAGSLLGPLIGSALL-LVDFRAAALAAAGVFAALTVAQALVLPPQPARSSGQGVLGD------------WREAVT 207
                 **********.****************************.********************777777777777777777777............****** PP

       MFS_1 206 dpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrls.drlgrrrrlllallllllaalglallavt.....s 298
                 d+ ++++ +al  +f+  ++l+  lp+   e  g    l ++ l+ ++ +v+++ ++ ++r++ +rl r +++ l+l+++  + + l l++v       
  KIR62281.1 208 DRRFLAFTLALSAMFALQNQLYLVLPVR-AEEAGGH-PLAVASLFVVSTVVTLAWQVPVTRWLhRRLARGPAIALGLAVMG-GGFVLPLAPVGgpagpV 303
                 **998777777777788888*******5.6666666.48888888888888888866666666266665555555444444.44444444444556663 PP

       MFS_1 299 savllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                   + +l + vl+ +g+ +++p +l l+  +a    +gt++glf +++++++a g
  KIR62281.1 304 RLAPVLGAAVLLAVGVLVAQPFVLELIPAFARDGLTGTYFGLFYLVSGVVAAAG 357
                 3333444777788888888*****************************999987 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.12
       MFS_1 150 Wravfyilaivsllafvlfllllpeepperk 180
                  +av ++l++++ la   ++++l ++ +  +
  KIR62281.1 373 VPAVAWLLCAALGLASAAAVWVLHRRGTLDP 403
                 5556555555555555545566654444444 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   4.0     4e-13   1.8e-09     232     372 ..      17     158 ..       3     169 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 4e-13
  MFS_1_like 232 lvalilgmswgiie..nFlflYL.kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisf 327
                 lv+  lg+ +g++    +l  YL ++lg s  ++G ++ ++ +++  +f+++    ++lG++ ++i++  + ++ f + a+  ++  +l + vL+g++ 
  KIR62281.1  17 LVVNQLGVNVGFYMllPYLAGYLaDDLGLSAAVIGLVLGVRNLSQQGMFLLGGSASDRLGARGVIIVGCALRAVGFGVFAVGVSLPALLAASVLSGLAG 115
                 5555566666665422699******************************************************************************** PP

  MFS_1_like 328 gllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGl 372
                 +l+  a+  y +++ap++ +a   +l++ +  ++G+ lG liG +
  KIR62281.1 116 ALFNPAVRAYLAQAAPDR-RAEAFALFNVF-ASAGSLLGPLIGSA 158
                 *************99987.68899999987.89999999999955 PP

>> Nuc_H_symport  Nucleoside H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.7   1.1e-07   0.00049     231     361 ..      36     159 ..      13     166 .. 0.81
   2 ?    1.3   0.2     0.031   1.4e+02     162     228 ..     169     231 ..     158     235 .. 0.66
   3 ?   -3.0   0.3      0.59   2.6e+03     349     385 ..     317     354 ..     312     391 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.1e-07
  Nuc_H_symport 231 nafLtevakivvklasillslsqvaeilfiLtlpfflkrfGikkvlllslvaaalrfalfaygaddepvgvvlllLslivyGvaydffyitayvfv 326
                     ++L +  ++       +l +  ++   ++L+ +    r+G + v++++    a+ f++fa g  + p  ++    + ++ G a + f+ ++  + 
     KIR62281.1  36 AGYLADDLGLSAAVIGLVLGVRNLSQQGMFLLGGSASDRLGARGVIIVGCALRAVGFGVFAVG-VSLPALLA----ASVLSGLAGALFNPAVRAYL 126
                    46777777777777788999999****999999******************************.44444444....45569*************** PP

  Nuc_H_symport 327 dkevpkdirasaqGlflllvnGvGallgsilsgal 361
                     + +p d ra a  lf+++    G+llg ++++al
     KIR62281.1 127 AQAAP-DRRAEAFALFNVFA-SAGSLLGPLIGSAL 159
                    98776.67*********876.57999999888754 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.031
  Nuc_H_symport 162 lliaagvslllavyaltLPkiPakkkakqslkkllgldafvLlknkrllvf.flvslllavvlqiyyv 228
                    l  a + ++l ++ al+LP  Pa++ ++  l    +++a+    ++r+l f   +s ++a++ q+y v
     KIR62281.1 169 LAAAGVFAALTVAQALVLPPQPARSSGQGVLG--DWREAV---TDRRFLAFtLALSAMFALQNQLYLV 231
                    44444557788899********8888776554..366664...3444444414467777777777766 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.59
  Nuc_H_symport 349 vGallgsilsgalvemftvdg.vvdwqtlwlvfaamal 385
                    vG l+++     l+  f+ dg +  + +l+ + +++++
     KIR62281.1 317 VGVLVAQPFVLELIPAFARDGlTGTYFGLFYLVSGVVA 354
                    55555555555555555555533345555444444333 PP

>> LacY_symp  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.9   6.8e-06      0.03      26     131 ..      31     128 ..      24     224 .. 0.80
   2 ?   -3.3   0.3      0.65   2.9e+03     110     156 ..     339     383 ..     329     385 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.8e-06
   LacY_symp  26 yfplfpvwlkevlglsktetGivfsvislfsilfqplfGlisdklGlkkellwvislllvlfapfliyvfepllqlnilvGalvGgvflGlvysagaga 124
                   p+++ +l++ lgls + +G+v  v +l    +  l G  sd+lG +  ++   +l  v f+ f + v  p l    ++  l G++f         +a
  KIR62281.1  31 LLPYLAGYLADDLGLSAAVIGLVLGVRNLSQQGMFLLGGSASDRLGARGVIIVGCALRAVGFGVFAVGVSLPALLAASVLSGLAGALFN--------PA 121
                 5689999***********************99999999********************************9988888888888999984........44 PP

   LacY_symp 125 ieayiek 131
                 + ay+ +
  KIR62281.1 122 VRAYLAQ 128
                 4444444 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.65
   LacY_symp 110 GgvflGlvysagagaieayiekvsraskfeyGkarvfGclGyalcas 156
                  g ++Gl y+    +  a +  v ra++   G    + ++ + lca+
  KIR62281.1 339 TGTYFGLFYLVSGVVAAAGTTAVGRAMD--DGSGSGVPAVAWLLCAA 383
                 4678888888766666666777777654..45555667777888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2817.34
//
Query:       KIR62282.1  [L=259]
Description: SAM-dependent methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-19   69.8   0.5    3.9e-19   69.2   0.5    1.3  1  Methyltransf_25  Methyltransferase domain
      7e-16   58.7   0.2      1e-15   58.1   0.2    1.3  1  Methyltransf_11  Methyltransferase domain
    6.5e-15   55.4   0.0    9.3e-15   54.8   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    2.3e-13   50.7   0.1    4.6e-13   49.8   0.1    1.5  1  Methyltransf_12  Methyltransferase domain
    3.6e-11   43.1   0.0    4.9e-11   42.7   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    2.2e-06   27.5   0.0    3.1e-06   27.0   0.0    1.1  1  NodS             Nodulation protein S (NodS)
    0.00015   21.2   0.0     0.0002   20.7   0.0    1.1  1  CMAS             Mycolic acid cyclopropane synthetase
     0.0046   16.3   0.0     0.0092   15.3   0.0    1.4  1  Methyltransf_2   O-methyltransferase domain
  ------ inclusion threshold ------
      0.014   14.8   0.0      0.018   14.4   0.0    1.1  1  TehB             Tellurite resistance protein TehB
      0.022   14.2   0.0      0.035   13.5   0.0    1.3  1  DUF1571          Protein of unknown function (DUF1571)
      0.024   14.3   0.0      0.033   13.8   0.0    1.2  1  TPMT             Thiopurine S-methyltransferase (TPMT)
      0.056   13.0   0.0      0.077   12.6   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
      0.083   12.9   0.0       0.12   12.4   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
       0.21   11.3   0.0        0.3   10.8   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.5     3e-22   3.9e-19       2      97 .]      39     129 ..      38     129 .. 0.94

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 3e-22
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEEST.GGG.SSHHHHHHHHHHHHHHE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssga.lhh.lsdedlekalkeiarvL 93 
                      Ld+GcGtGr++ +la+ +     tg+D s++ml++ar+r+    ++v+fv +d++ ++++d +fD+v++  + + +  +++dl ++l++++ +L
       KIR62282.1  39 LDVGCGTGRDAGRLAQLG--WAATGIDTSAAMLAHARRRH----PHVRFVAADMRGFDLAD-RFDAVTCLDSaMLYcHTNADLTAFLARCHAHL 125
                      9***************95..********************....9*************998.*******888777746789************* PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       KIR62282.1 126 APGG 129
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.2     8e-19     1e-15       1      95 [.      39     132 ..      39     133 .. 0.89

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 8e-19
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES...-CCC-.CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvsse...vlhhv.edpekalkeiaRvLkp 90 
                      LdvGcGtGr a  la+ g   +g+D+s++ml+ a+++ +     v+fv ad++ + ++d  fD+v++       +h  +d+ ++l+ ++  L p
       KIR62282.1  39 LDVGCGTGRDAGRLAQLGWAATGIDTSAAMLAHARRRHPH----VRFVAADMRGFDLAD-RFDAVTCLDsamLYCHTnADLTAFLARCHAHLAP 127
                      8******************************888766655....779************.*******996544445579*************** PP

                      EEEEE CS
  Methyltransf_11  91 gGllv 95 
                      gGll+
       KIR62282.1 128 GGLLL 132
                      **996 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   7.3e-18   9.3e-15      13     164 ..      24     220 ..      10     221 .. 0.78

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 7.3e-18
  Methyltransf_23  13 lerllpk.lraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlr...evlehvp.dppel 101
                      ++ ll +  ++g r+Ld+GcGtG+ +  l++ g+  tg+D s ++ + a+ ++  +   +  +   + +++fd +++    ++ +h   d+++ 
       KIR62282.1  24 VDDLLRRhGPPGRRLLDVGCGTGRDAGRLAQLGWAATGIDTSAAMLAHARRRHPHVRFVAADMRGFDLADRFDAVTCLdsaMLYCHTNaDLTAF 117
                      4455544246889***********************************9844444444444555558899***99986333789***999**** PP

  Methyltransf_23 102 lrqiatllkpgGylllseplasl...................................kedrllld...wlyl......vpagrhisffsarsl 151
                      l++ +++l+pgG+ll ++ +                                      +   ll+    w ++      v+ + ++ +f  ++l
       KIR62282.1 118 LARCHAHLAPGGLLLAEMRNGAFflgntelldgtsvrtvpwrgvaytsrtrlwidhaeQ---LLRReraWSWPgapeplVQTSAWRLLFP-QEL 207
                      ******************98877999999999999999999999999988888875442...2222444555443555566667777777.9** PP

  Methyltransf_23 152 kelleeaGlevve 164
                      ++ll  aG++v++
       KIR62282.1 208 RHLLDTAGFDVLT 220
                      *********9986 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.1   3.6e-16   4.6e-13       1      99 []      39     131 ..      39     131 .. 0.85

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 3.6e-16
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvas.nvlhhl...kdirevldnir 90 
                      L++GcGtG+ + +l++   ++  tg+D s++++++a++++ + +    + ++ ++l +        fD+v+++ +++ ++   +d+ ++l++++
       KIR62282.1  39 LDVGCGTGRDAGRLAQL--GWAATGIDTSAAMLAHARRRHPHVRFVA-ADMRGFDLAD-------RFDAVTCLdSAMLYChtnADLTAFLARCH 122
                      8****************..**************99999999888644.4444444443.......9*****996666666779*********** PP

  Methyltransf_12  91 klLkpgGrl 99 
                      ++L+pgG l
       KIR62282.1 123 AHLAPGGLL 131
                      *******86 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   3.8e-14   4.9e-11       6     111 ..      37     135 ..      34     181 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 3.8e-14
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl....naladpdkile 95 
                      r+lD+GCGtG+++ +la +lg     +GiD s+ ++ +Ar +        v+F ++d+  ++  l+ ++fD +++ +      ++ ad+ ++l 
       KIR62282.1  37 RLLDVGCGTGRDAGRLA-QLGW--AATGIDTSAAMLAHARRRH-----PHVRFVAADMRGFD--LA-DRFDAVTCLDSAmlycHTNADLTAFLA 119
                      79***************.6665..467**************83.....379***********..77.8*****99755567989999******* PP

  Methyltransf_31  96 eiervlkpggillied 111
                      + +  l pgg ll+e 
       KIR62282.1 120 RCHAHLAPGGLLLAEM 135
                      **********999764 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   2.4e-09   3.1e-06      47     142 ..      38     131 ..      26     139 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.4e-09
        NodS  47 alevGcaaGalterlapyckrltvvdvveeaiararervkesshiswivsdvqqfstdekfdlivvae.vlyyiedvaelraavrnlvsllapdgql 142
                  l+vGc +G  + rla +    t +d     +a+ar+r    +h+ ++ +d++ f++ ++fd + + +  + y +  a+l a +      lap+g l
  KIR62282.1  38 LLDVGCGTGRDAGRLAQLGWAATGIDTSAAMLAHARRR---HPHVRFVAADMRGFDLADRFDAVTCLDsAMLYCHTNADLTAFLARCHAHLAPGGLL 131
                 699***********************999999999988...489********************9976368899******99999999999998876 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.6e-07    0.0002      62     164 ..      34     133 ..      14     139 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.6e-07
                 TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-----SEEEEES..-GGGTSGGGHHHHHHHHHHHS-T CS
        CMAS  62 pGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedldekvdrvvsvg..afehvgkenydtffkklkkllke 158
                 pG +lLd+GcG G  + r ++  +    g+  S+   ++a++r  ++     v  ++ ++ dl++++d+v  ++  ++    ++ + +f ++++  l +
  KIR62282.1  34 PGRRLLDVGCGTGRDAGRLAQL-GWAATGIDTSAAMLAHARRRHPHVR---FVAADMRGF-DLADRFDAVTCLDsaMLYCHTNADLTAFLARCHAHLAP 127
                 8*****************9998.******************9988775...677788887.8999******99832444445666889*********** PP

                 T-EEEE CS
        CMAS 159 dGllll 164
                 +Glll 
  KIR62282.1 128 GGLLLA 133
                 ***986 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.2e-06    0.0092      64     167 ..      36     135 ..      31     145 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.2e-06
                     SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS-----TTEEEEES-TTTS---.--SEEEE..ESSGGGS-HHHHHHHHHHHHHH CS
  Methyltransf_2  64 kslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehlsageeervefvgGdffkdslP.eaDaill..krvlhDwsdekcvklLkrvkka 155
                     ++l+DvG GtG  a   +++    ++i        ++A+++     +++v+fv+ d++   l  + Da+    + +l+ +++++ + +L+r++  
      KIR62282.1  36 RRLLDVGCGTGRDAGRLAQLGWAATGIDTSA-AMLAHARRR-----HPHVRFVAADMRGFDLAdRFDAVTCldSAMLYCHTNADLTAFLARCHAH 124
                     579999*999999999999866555554443.455666666.....7**********9988887889986423679*****************99 PP

                     --TT-EEEEEE- CS
  Methyltransf_2 156 lpagGkvivvea 167
                     l +gG ++++e+
      KIR62282.1 125 LAPGG-LLLAEM 135
                     98877.566665 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.4e-05     0.018      33      69 ..      37      73 ..      31     136 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-05
                EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH CS
        TehB 33 kvldlgcgqgrnslylsllgydvtawdknensiafle 69
                + ld+gcg gr++  l+ lg+  t +d  +  +a+ +
  KIR62282.1 37 RLLDVGCGTGRDAGRLAQLGWAATGIDTSAAMLAHAR 73
                579************************9887776654 PP

>> DUF1571  Protein of unknown function (DUF1571)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.8e-05     0.035     145     173 ..     162     190 ..     148     209 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.8e-05
     DUF1571 145 vefskaelllDeelklpirveaydwPaae 173
                  + s+++l++D++ +l++r +a++wP a+
  KIR62282.1 162 AYTSRTRLWIDHAEQLLRRERAWSWPGAP 190
                 56799*********************654 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.6e-05     0.033      31      84 ..      29      78 ..      10     102 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.6e-05
                HT.T-S--EEEEEET-TT-HHHHHH-BTTEEEEEE-S-HHHHHHHHHHHTTSGG CS
        TPMT 31 dalkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvekffeeanlepk 84
                 + + ++g r l  +CG + d+  lA+ g+   G++ s + ++++   +  +p+
  KIR62282.1 29 RR-HGPPGRRLLDVGCGTGRDAGRLAQLGWAATGIDTSAAMLAHA---RRRHPH 78
                44.67889999999************************9998885...333444 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     6e-05     0.077      12      65 ..      33      85 ..      25     116 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6e-05
        MetW 12 kpgsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqgdld 65
                +pg r+ld+GcG G     l++  +  + G++++++ +a++  +  +v    +d
  KIR62282.1 33 PPGRRLLDVGCGTGRDAGRLAQ-LGWAATGIDTSAAMLAHARRRHPHVRFVAAD 85
                7999************999966.9************999998887777655444 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.1e-05      0.12      10      77 ..      21      81 ..      18     113 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.1e-05
  Methyltransf_32 10 aelvakllkelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkk 77
                     a +v++ll++  +  +  +++DvG+G g  + +la+    ++   +gid+++++ ++a++r  +++  
       KIR62282.1 21 AGFVDDLLRR--HGPPGRRLLDVGCGTGRDAGRLAQ----LGWAATGIDTSAAMLAHARRRHPHVR-F 81
                     6688888888..5777899****************9....79******************998887.3 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00023       0.3      72     117 ..      33      75 ..      12      98 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00023
                 -TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHH CS
        PCMT  72 kkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrn 117
                  +g r L+vG+G+G  +  la+l  + +   +i+ ++ + ++a+r+
  KIR62282.1  33 PPGRRLLDVGCGTGRDAGRLAQLGWAAT---GIDTSAAMLAHARRR 75 
                 5899*************99999876666...899988888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1702.16
//
Query:       KIR62283.1  [L=319]
Description: peptide ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-26   93.0   7.0    1.8e-26   93.0   7.0    1.6  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2      0.22   3.9e+03     155     167 ..     100     112 ..      71     116 .. 0.50
   2 !   93.0   7.0   9.8e-31   1.8e-26       2     182 ..     119     314 ..     118     317 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.22
  BPD_transp_1 155 nggvlalviavll 167
                   +++++ l++a+ll
    KIR62283.1 100 AAPTVLLAAATLL 112
                   2333333333333 PP

  == domain 2  score: 93.0 bits;  conditional E-value: 9.8e-31
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvf................vilsilghlilpviillllsaapyvrlirraalrslpkd 82 
                   ++lG+laa++ +++ld++l+     l+++P f+la+llv+vf                 +ls    l+lp+++ll+  +  + rl+r+++++++  +
    KIR62283.1 119 VGLGMLAARREGGRLDRALSATAVGLYAVPEFALALLLVAVFgvrlawlpptavgtggDLLSRPAVLVLPLVVLLARPFCSLSRLTRAGMIEAMRAE 215
                   89*********************************************************************************************** PP

  BPD_transp_1  83 lveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrll 179
                   +v  ar lG++++++   ++lPnal p++ +l+ +  +llgg +++e ++  pGlgt l++a  ++d++  + g+ + +++ ++ +nl+ad+++  l
    KIR62283.1 216 HVAHARRLGVPERRLRLVHALPNALAPVAQQLARTTDWLLGGVIVVEAVFVVPGLGTALVDAVTARDVPTVQ-GLCVLVAVTTVTVNLAADLVAFRL 311
                   ************************************************************************.************************ PP

  BPD_transp_1 180 dpr 182
                   +pr
    KIR62283.1 312 APR 314
                   **9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2520.41
//
Query:       KIR62284.1  [L=539]
Description: peptide ABC transporter ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-49  167.8   0.0    1.4e-23   83.9   0.0    2.2  2  ABC_tran       ABC transporter
    5.5e-11   42.9   3.7    1.9e-05   25.0   0.3    3.9  2  AAA_22         AAA domain
    3.4e-09   36.9   0.1      0.076   12.8   0.0    4.0  4  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    3.2e-07   30.9  17.1      2e-06   28.3   2.9    3.2  2  AAA_16         AAA ATPase domain
    1.1e-06   28.3   1.0      0.023   14.1   0.0    4.0  4  SMC_N          RecF/RecN/SMC N terminal domain
    6.5e-06   25.8   0.5      0.075   12.8   0.0    2.6  2  AAA_29         P-loop containing region of AAA domain
    0.00041   20.8   0.0       0.44   11.1   0.0    2.5  2  oligo_HPY      Oligopeptide/dipeptide transporter, C-terminal
    0.00084   19.5   9.6       0.21   11.8   3.0    3.5  2  AAA_33         AAA domain
     0.0016   18.4   0.2        1.2    9.0   0.0    2.8  2  MobB           Molybdopterin guanine dinucleotide synthesis p
     0.0041   17.1   2.2       0.54   10.2   0.1    2.6  2  NACHT          NACHT domain
     0.0042   17.2   0.7          4    7.6   0.1    2.9  2  MMR_HSR1       50S ribosome-binding GTPase
      0.005   16.8   0.5          4    7.3   0.1    2.4  2  RsgA_GTPase    RsgA GTPase
     0.0057   15.9   2.5       0.39    9.9   0.2    2.2  2  NB-ARC         NB-ARC domain
  ------ inclusion threshold ------
      0.014   15.1   0.8        2.2    7.9   0.1    2.4  2  AAA_24         AAA domain
      0.014   15.1   2.1        4.1    7.1   0.1    3.1  3  PduV-EutP      Ethanolamine utilisation - propanediol utilisa
      0.017   15.1   1.9        2.8    7.9   0.2    2.3  2  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
      0.017   14.9   2.4        5.9    6.6   0.1    3.2  3  IstB_IS21      IstB-like ATP binding protein
       0.02   14.3   3.9       0.13   11.6   0.3    2.3  2  Mg_chelatase   Magnesium chelatase, subunit ChlI
       0.02   14.4  20.8       0.56    9.8   7.8    3.8  2  AAA_25         AAA domain
      0.021   15.4   0.7        2.3    8.7   0.1    2.1  2  AAA_23         AAA domain
      0.022   15.3   3.0        6.1    7.4   0.3    3.1  2  AAA_18         AAA domain
      0.023   15.1   5.7        3.3    8.1   0.7    3.0  3  AAA            ATPase family associated with various cellular
       0.03   13.7   0.4        4.7    6.6   0.0    3.6  4  TniB           Bacterial TniB protein
      0.053   12.9   1.6        6.1    6.1   0.2    2.4  2  FtsK_SpoIIIE   FtsK/SpoIIIE family
      0.082   11.9   1.5        1.6    7.7   0.1    2.6  2  T2SSE          Type II/IV secretion system protein
      0.086   12.3   2.1        4.2    6.8   0.1    2.2  2  Pox_A32        Poxvirus A32 protein
       0.14   11.9   0.7        8.3    6.1   0.0    2.3  2  PRK            Phosphoribulokinase / Uridine kinase family
       0.15   12.1   2.1       0.38   10.9   0.3    2.5  2  Resolvase      Resolvase, N terminal domain
       0.22   10.3   1.8         11    4.6   0.0    3.3  3  ABC_ATPase     Predicted ATPase of the ABC class
       0.26   10.8   0.2         13    5.2   0.1    2.2  2  DUF927         Domain of unknown function (DUF927)
       0.34   10.5   1.1         22    4.6   0.0    2.5  2  cobW           CobW/HypB/UreG, nucleotide-binding domain
       0.65   10.0   3.9        5.9    6.9   0.2    2.3  2  DUF87          Helicase HerA, central domain
       0.76    8.6   3.0         16    4.3   0.0    2.6  3  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
       0.82    9.3   2.8         16    5.1   0.1    2.3  2  SRP54          SRP54-type protein, GTPase domain
       0.86    9.6   4.9         12    5.9   0.2    3.3  3  AAA_5          AAA domain (dynein-related subfamily)
       0.91    9.2  23.6       0.83    9.3   0.9    4.3  4  AAA_30         AAA domain
        1.2    9.0   3.5         15    5.4   0.1    3.1  3  NTPase_1       NTPase
        2.1    7.6   5.9        4.3    6.6   0.3    2.4  2  Zeta_toxin     Zeta toxin
          7    7.0   5.8         20    5.5   0.9    2.9  2  AAA_19         AAA domain
          8    7.0   8.5        0.3   11.6   0.2    2.8  1  DinB_2         DinB superfamily
        8.5    6.6   6.9         51    4.1   0.5    3.5  3  AAA_28         AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   1.2e-25   5.4e-23       2     136 ..      25     195 ..      24     196 .. 0.90
   2 !   83.9   0.0   3.2e-26   1.4e-23       1     137 []     304     456 ..     304     456 .. 0.90

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 1.2e-25
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGGB-HHHCCHCEEEE-SS..--S-TTSBHHHH................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx................ RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlkeqeleslrkeigvlpqe..pqlfpeltvren................ 79 
                   vs+++ +ge++a+vG++G+GK+t  ++l+g+  p    +G++++ g++++   ++     +g++pq+  + l+p  +++                  
  KIR62284.1  25 AGVSFTVAAGEVLALVGRSGSGKTTAGRALLGEAGPgvrLAGRVEVAGRPVSP-ATPPPPGVVGYVPQQpsAALNPVRRIGAVlrevalrhtrperrtp 122
                 689*********************************9999*************.9999***********66666666666666999************* PP

                 .................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                                  + ++ ++++l++++l+  + + +++ p++LSgGq+qr+++a all ++++l++DEpt
  KIR62284.1 123 ggppgdataratvnrrsAVRRAVADVLARVDLPA-DREFLRRFPHQLSGGQQQRLVVAHALLARARVLVADEPT 195
                 *****99999988775555555***********9.777788999*****************************9 PP

  == domain 2  score: 83.9 bits;  conditional E-value: 3.2e-26
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TTSBHHHH...........HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx...........xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpeltvren...........esde 83 
                 l+ v+  + +g ++a+vG++G+GK+tL++++agl+ p  G++ l g++l     ++++   + +++++q+  ++++p+ +v e+             ++
  KIR62284.1 304 LRGVTAAVAPGGCLAVVGRSGSGKTTLARCVAGLHPPRGGTVGLGGRPLAGtldRRTRADLAAVQYVFQDarASFDPHRSVLEQvsraavrlralPPTR 402
                 5679999*******************************************9887777888899*******9999999999****998888777774555 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                   ++a++ lg ++l+++vv ++p  LSgG+ qr alarall +p+++++DE t+
  KIR62284.1 403 ARDAARRVLGEVGLAADVVARRPDRLSGGELQRAALARALLAEPRVVICDEITS 456
                 5777777788888888***********************************985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   0.00012     0.055       7      71 ..      36     134 ..      32     233 .. 0.64
   2 !   25.0   0.3   4.4e-08   1.9e-05       5     128 ..     314     484 ..     311     494 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.00012
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee..............erpevvfvtlpsst...sskdllrellralglelka.................e 71 
                 +l+++G sG+GKTt  r ll ++      +               ++p+vv + +++++   ++     ++lr++ l++ +                  
  KIR62284.1  36 VLALVGRSGSGKTTAGRALLGEAGPGVRLAGrvevagrpvspatpPPPGVVGYVPQQPSaalNPVRRIGAVLREVALRHTRperrtpggppgdataraT 134
                 789****************99985544444477777777777777666666555555555666666666666666666666555555555555555541 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 4.4e-08
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee.......................................erpevv..fvtlpsstsskdllrellr 62 
                  g+l+v+G sG+GKTtl+r ++  ++ +                                            e+++ +  +  +  +t  +d +r++l 
  KIR62284.1 314 GGCLAVVGRSGSGKTTLARCVAGLHPPRGGTVGlggrplagtldrrtradlaavqyvfqdarasfdphrsvlEQVSRAavRLRALPPTRARDAARRVLG 412
                 69**********************986655554******************999999999999999777666444444235555555588888999999 PP

      AAA_22  63 alglelka.....erlsseellealeqalrarav...ielliiDEaqh.lr..seealeeLrsllnlsrkgvqliLv 128
                 ++gl ++       rls       l++a+ ara    ++++i DE+   l+  s + +  L+++l  + +g++l+++
  KIR62284.1 413 EVGLAADVvarrpDRLSG----GELQRAALARALlaePRVVICDEITSgLDtvSRDRIVALVDRLR-RAHGLALVVI 484
                 999888775555544444....55555555555555556*******99998775444444444443.3777777766 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0025       1.1       3      20 ..      38      55 ..      36      99 .. 0.84
   2 ?    1.7   0.0      0.43   1.9e+02     189     301 ..     135     229 ..     122     231 .. 0.77
   3 !    8.4   0.0    0.0038       1.6       3      23 ..     318     338 ..     316     358 .. 0.87
   4 !   12.8   0.0   0.00017     0.076     234     300 ..     425     489 ..     396     492 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0025
      AAA_21  3 vliGpNgsGKSnLLdald 20
                +l+G+ gsGK++  +al 
  KIR62284.1 38 ALVGRSGSGKTTAGRALL 55
                8***************94 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.43
      AAA_21 189 vrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr 287
                 v++++ v+  + d +++++l+a++ ++ r+               +++lS G+++   +++  l a+   ++l+ DEp +g +    r ++  l+ l++
  KIR62284.1 135 VNRRSAVRRAVADVLARVDLPADREFLRRF---------------PHQLSGGQQQR-LVVAHALLARA--RVLVADEPTTGQDSLTRRDVAHELRTLAD 215
                 667777788888888888888888888888...............999********.66666666664..9*******999777777777777766666 PP

      AAA_21 288 ngaQviltTHSpll 301
                  g  v+l +H+ +l
  KIR62284.1 216 AGMAVVLLSHDLHL 229
                 67777777777766 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0038
      AAA_21   3 vliGpNgsGKSnLLdaldlla 23 
                 +++G+ gsGK++L ++  +l+
  KIR62284.1 318 AVVGRSGSGKTTLARCVAGLH 338
                 69*************999884 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 0.00017
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSpl 300
                 ++ lS G ++ +al+ all+ +   ++++ DE+ +gL+     r++ l+++l+r +g  +++ +H+  
  KIR62284.1 425 PDRLSGGELQRAALARALLAEP---RVVICDEITSGLDTVSRDRIVALVDRLRRaHGLALVVISHDRD 489
                 5568999999999999999988...**************999999999988888899********954 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.8      0.02       8.7       2      50 ..      11      60 ..      10     304 .. 0.84
   2 !   28.3   2.9   4.6e-09     2e-06      19     169 ..     311     481 ..     297     484 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.02
      AAA_16  2 lvGReeel..eqLlsale.rvrsgrpelvllsGesGvGKsslvrellralek 50
                +vG ++e+  ++Ll+ ++ +v++g  e++ l+G sG+GK++  r+ll ++  
  KIR62284.1 11 VVGLDAEVagRRLLAGVSfTVAAG--EVLALVGRSGSGKTTAGRALLGEAGP 60
                688888887777777777677777..79*************99999965544 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 4.6e-09
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekdggif......lrgkcdqlesa....ipysalaqalareellrqlldeaesaeleawrekleeala. 106
                 v+ g  +++ ++G sG+GK++l+r+++     +gg +      l+g+ d+ ++a    + y        + +  r+  d+++s         le++ + 
  KIR62284.1 311 VAPG--GCLAVVGRSGSGKTTLARCVAGLHPPRGGTVglggrpLAGTLDRRTRAdlaaVQY------V-F-QDARASFDPHRS--------VLEQVSRa 391
                 3333..89*******************7777775555555556888888885554444222......2.1.233333333222........11111111 PP

      AAA_16 107 ..............................avpelagaea...srllellkrll.allsrderplvlvlDdlq.wadeaslqllaaLlrllesk.pllv 169
                                               a        +   +    +l+r++ a++   ++p v+++D++   +d+ s++ + aL+++l +   l++
  KIR62284.1 392 avrlralpptrardaarrvlgevglaadvvA--------RrpdRLSGGELQRAAlARALL-AEPRVVICDEITsGLDTVSRDRIVALVDRLRRAhGLAL 481
                 1111111111111111222223323332222........023222223344444344444.669********989999***********9998546644 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1      0.11        47      26      48 ..      36      55 ..      25      64 .. 0.83
   2 ?    2.7   0.0      0.16        72     112     189 ..     134     216 ..     127     242 .. 0.71
   3 ?    3.5   0.0     0.097        42      26      41 ..     316     331 ..     307     338 .. 0.84
   4 !   14.1   0.0   5.4e-05     0.023     135     208 ..     426     497 ..     352     507 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.11
                EEEEEESTTSSHHHHHHHHHHHC CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldAilFvL 48
                + a+vG+ GSGK+    A+   L
  KIR62284.1 36 VLALVGRSGSGKTTAGRAL---L 55
                6799*********988887...4 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.16
                 EETTEEE-HHHHHHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 112 kingkevtkkevsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn 189
                 ++n++++ ++ v+++l+++++  +         +LSgG+++     L++A     +a + + De     D   ++ va+ l++  + 
  KIR62284.1 134 TVNRRSAVRRAVADVLARVDLPADreflrrfphQLSGGQQQ----RLVVAHALLARARVLVADEPTTGQDSLTRRDVAHELRTLADA 216
                 678888888888888888888888888888888*****987....455555556667777777777777777777777777766654 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.097
                 EEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnll 41 
                   a+vG+ GSGK+ l 
  KIR62284.1 316 CLAVVGRSGSGKTTLA 331
                 568**********986 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 5.4e-05
                 TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadkl 208
                 + LSgGe + +ala    + + +p  +++ Dei + LD   + +++ l+++ +      ++vis++++++++    
  KIR62284.1 426 DRLSGGELQRAALARA--LLA-EP-RVVICDEITSGLDTVSRDRIVALVDRLRRAhgLALVVISHDRDVVARLADH 497
                 489***9888887743..333.33.35788*******************97665534899*****99998876444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00094      0.41      16      37 ..      28      49 ..      21      54 .. 0.81
   2 !   12.8   0.0   0.00017     0.075      14      38 ..     306     330 ..     302     338 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00094
      AAA_29 16 tieidlkgatlltGpsGsGKST 37
                ++++   ++  l+G+sGsGK+T
  KIR62284.1 28 SFTVAAGEVLALVGRSGSGKTT 49
                56666555999**********9 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00017
      AAA_29  14 ghtieidlkgatlltGpsGsGKSTl 38 
                 g t+ + + g   ++G+sGsGK+Tl
  KIR62284.1 306 GVTAAVAPGGCLAVVGRSGSGKTTL 330
                 5678889999999***********9 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.017       7.6       1      33 [.     246     278 ..     246     316 .. 0.85
   2 !   11.1   0.0     0.001      0.44       1      23 [.     507     529 ..     507     533 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.017
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd 33 
                 vE gp+++++  p+   T+ Ll+++p   r   
  KIR62284.1 246 VEAGPAADVLAAPRDERTRRLLAAAPAAPRAAA 278
                 8*************************9877666 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.001
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlr 23 
                 vE gp+s+l++ ++HP T+aLl+
  KIR62284.1 507 VEAGPASALLTAARHPLTRALLH 529
                 8********************85 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   3.0   0.00047      0.21       1      31 [.      36      67 ..      36     303 .. 0.89
   2 !   10.0   0.5    0.0016      0.71       4      20 ..     319     335 ..     317     348 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00047
      AAA_33  1 lvllvGlpGsGKstlaerllkklg.avllssd 31
                ++ lvG +GsGK+t  + ll + g +v+l+  
  KIR62284.1 36 VLALVGRSGSGKTTAGRALLGEAGpGVRLAGR 67
                6789******************9999999765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0016
      AAA_33   4 lvGlpGsGKstlaerll 20 
                 +vG +GsGK+tla+ ++
  KIR62284.1 319 VVGRSGSGKTTLARCVA 335
                 79***********9776 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.018       7.7       1      19 [.      36      54 ..      36      61 .. 0.84
   2 !    9.0   0.0    0.0029       1.2       2      19 ..     317     334 ..     316     347 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.018
        MobB  1 vlgivgksgsGKTtLlekl 19
                vl++vg+sgsGKTt    l
  KIR62284.1 36 VLALVGRSGSGKTTAGRAL 54
                799**********976665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0029
        MobB   2 lgivgksgsGKTtLlekl 19 
                 l++vg+sgsGKTtL   +
  KIR62284.1 317 LAVVGRSGSGKTTLARCV 334
                 789**********98765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.3     0.026        11       2      18 ..      36      52 ..      35      62 .. 0.83
   2 !   10.2   0.1    0.0012      0.54       3      21 ..     317     335 ..     316     338 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.026
                CEEEEC-TTTCHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlq 18
                +++l G++GsGKTt  +
  KIR62284.1 36 VLALVGRSGSGKTTAGR 52
                7899*********9755 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0012
                 EEEEC-TTTCHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqkla 21 
                 +++ G++GsGKTtL++ +a
  KIR62284.1 317 LAVVGRSGSGKTTLARCVA 335
                 5799***********9765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1     0.009         4       2      22 ..      37      57 ..      36      75 .. 0.84
   2 ?    6.9   0.0     0.015       6.5       2      19 ..     317     334 ..     316     363 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.009
                EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge 22
                 a+vGr+ +GK+t  +al+ge
  KIR62284.1 37 LALVGRSGSGKTTAGRALLGE 57
                589***************996 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.015
                 EEEEESTTSSHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinal 19 
                  a+vGr+ +GK+tL +  
  KIR62284.1 317 LAVVGRSGSGKTTLARCV 334
                 58************8865 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1     0.009         4      98     122 ..      33      57 ..      12      70 .. 0.85
   2 ?    7.1   0.0     0.011       4.7     100     120 ..     315     335 ..     294     345 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.009
                  TTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpe 122
                  ++++ +lvG SG GK+t   all+e
   KIR62284.1  33 AGEVLALVGRSGSGKTTAGRALLGE 57 
                  56999************88888776 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.011
                  SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinall 120
                   + ++vG SG GK+tL   ++
   KIR62284.1 315 GCLAVVGRSGSGKTTLARCVA 335
                  77899***********87765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2     0.016       7.1      22      35 ..      36      49 ..      30      57 .. 0.87
   2 !    9.9   0.2   0.00088      0.39      22      40 ..     316     334 ..     312     338 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.016
                EEEEEESTTSSHHH CS
      NB-ARC 22 vvalvGmgGvGKtt 35
                v+alvG+ G+GKtt
  KIR62284.1 36 VLALVGRSGSGKTT 49
                89***********9 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00088
                 EEEEEESTTSSHHHHHHHH CS
      NB-ARC  22 vvalvGmgGvGKttlakqi 40 
                  +a+vG+ G+GKttla+ +
  KIR62284.1 316 CLAVVGRSGSGKTTLARCV 334
                 589************9865 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.031        14       4      22 ..      36      54 ..      33      62 .. 0.83
   2 ?    7.9   0.1    0.0051       2.2       5      22 ..     317     334 ..     315     361 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.031
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 ++++G sg+GKTt  + l
  KIR62284.1 36 VLALVGRSGSGKTTAGRAL 54
                5799**********87655 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0051
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 ++++G sg+GKTtla+  
  KIR62284.1 317 LAVVGRSGSGKTTLARCV 334
                 689***********9866 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.028        12       5      24 ..      38      57 ..      35      58 .. 0.85
   2 ?    7.1   0.1    0.0094       4.1       6      23 ..     319     336 ..     316     338 .. 0.85
   3 ?   -1.0   0.0       3.1   1.4e+03      53      72 ..     477     496 ..     473     501 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.028
   PduV-EutP  5 lliGkvgsGKttLtqalkge 24
                 l+G++gsGKtt  +al ge
  KIR62284.1 38 ALVGRSGSGKTTAGRALLGE 57
                59**********99998765 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0094
   PduV-EutP   6 liGkvgsGKttLtqalkg 23 
                 ++G++gsGKttL++ + g
  KIR62284.1 319 VVGRSGSGKTTLARCVAG 336
                 79**********997765 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 3.1
   PduV-EutP  53 lysalivtsaeadvialvqd 72 
                    al+v+s++ dv+a + d
  KIR62284.1 477 HGLALVVISHDRDVVARLAD 496
                 56799**********98877 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2    0.0065       2.8      18      42 ..      31      57 ..      16      65 .. 0.77
   2 ?    6.3   0.1     0.021       9.1      19      40 ..     314     335 ..     293     338 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0065
                H..TEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE 18 l..gdvilLeGdLGaGKTtlvrglaka 42
                +  g+v++L G  G+GKTt  r+l+ +
  KIR62284.1 31 VaaGEVLALVGRSGSGKTTAGRALLGE 57
                134889*************99998865 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.021
                 TEEEEEEESTTSSHHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrgla 40 
                 g +++  G  G+GKTtl+r +a
  KIR62284.1 314 GGCLAVVGRSGSGKTTLARCVA 335
                 5679999***********9875 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.017       7.4      37      67 ..      23      54 ..      14      61 .. 0.80
   2 ?    6.6   0.1     0.014       5.9      45      67 ..     312     334 ..     286     340 .. 0.82
   3 ?   -1.2   0.0       3.4   1.5e+03     105     138 ..     442     477 ..     430     491 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.017
   IstB_IS21 37 eLatlsf.iekkenivllGpsGvGKshlaial 67
                 La+ sf +++ e ++l+G sG GK+    al
  KIR62284.1 23 LLAGVSFtVAAGEVLALVGRSGSGKTTAGRAL 54
                478888845678999***********877765 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.014
   IstB_IS21  45 ekkenivllGpsGvGKshlaial 67 
                 +   +++++G sG GK+ la  +
  KIR62284.1 312 APGGCLAVVGRSGSGKTTLARCV 334
                 556799*************9765 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.4
   IstB_IS21 105 rllkvdllilDdl..gllpldqaeaellfeviekry 138
                  l++++++i D++  gl +++++    l + + ++ 
  KIR62284.1 442 LLAEPRVVICDEItsGLDTVSRDRIVALVDRLRRAH 477
                 466779999999744667777666666555555555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.3     0.091        40      18      42 ..      30      54 ..      16      60 .. 0.78
   2 ?   11.6   0.3   0.00031      0.13      13      48 ..     305     340 ..     298     347 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.091
  Mg_chelatase 18 aaaGgHnlllvGppGsGKtmlakrl 42
                  ++a g  l lvG +GsGKt   ++l
    KIR62284.1 30 TVAAGEVLALVGRSGSGKTTAGRAL 54
                  556667899**********987766 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00031
  Mg_chelatase  13 raleiaaaGgHnlllvGppGsGKtmlakrlpsllpp 48 
                   r ++ a+a g  l +vG +GsGKt la+++++l pp
    KIR62284.1 305 RGVTAAVAPGGCLAVVGRSGSGKTTLARCVAGLHPP 340
                   55667888888999******************9998 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.9    0.0043       1.9      10      66 ..       9      74 ..       2     244 .. 0.81
   2 ?    9.8   7.8    0.0013      0.56      22     188 ..     300     486 ..     273     489 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0043
      AAA_25 10 vsvadlaapppprrwlvkg..llpagelallaGapgtGKttlaldlalavatGkpwlg.......p 66
                v+v +l+a+ + rr l +    ++age+ +l+G++g+GKtt+   l  +   G  ++g       p
  KIR62284.1  9 VRVVGLDAEVAGRRLLAGVsfTVAAGEVLALVGRSGSGKTTAGRALLGEAGPGVRLAGrvevagrP 74
                5566666666677755542346789****************9888877777777777744444441 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0013
      AAA_25  22 rrwlvkg...llpagelallaGapgtGKttlaldlalava........tGkpwlg...pvap.eqgkVlyvsaEdsedelrrRlravgeal........ 97 
                 rr +++g    ++ g+  +++G++g+GKttla  +a             G+p++g   + ++    + + +++ d+++ + +  + v+e++        
  KIR62284.1 300 RRTVLRGvtaAVAPGGCLAVVGRSGSGKTTLARCVAGLHPprggtvglGGRPLAGtldR-RTrADLAAVQYVFQDARASFDPHRS-VLEQVsraavrlr 396
                 444444422233569999*************9777743223444456799999999954.4448888888888888887765433.3333333347777 PP

      AAA_25  98 ......rddarllvldlagv.eslpLfakdrggtlltadvdaleaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188
                       ++da  +vl  +g   ++  + +dr +   + + +al++a+ + e +r+v+ D +++ l+  +      +++v+ ++r++r++g a++++ H
  KIR62284.1 397 alpptrARDAARRVLGEVGLaADVVARRPDRLSG-GELQRAALARALLA-E-PRVVICDEITSGLDTVSR-----DRIVALVDRLRRAHGLALVVISH 486
                 7777663333333443333333333222222222.23344569999999.5.**********98877555.....79********************9 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1      0.07        31      23      38 ..      38      53 ..      28      55 .. 0.84
   2 ?    8.7   0.1    0.0053       2.3      22      39 ..     317     334 ..     313     336 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.07
      AAA_23 23 lItGpNGaGKTTildA 38
                +++G  G+GKTT  +A
  KIR62284.1 38 ALVGRSGSGKTTAGRA 53
                789*********7666 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0053
      AAA_23  22 tlItGpNGaGKTTildAi 39 
                  +++G  G+GKTT+ +++
  KIR62284.1 317 LAVVGRSGSGKTTLARCV 334
                 5789**********9996 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.3     0.014       6.1       3      18 ..      39      54 ..      37      75 .. 0.85
   2 ?    7.0   0.0     0.018       7.9       3      18 ..     319     334 ..     317     389 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.014
      AAA_18  3 ltGtpGvGKttlakeL 18
                l G +G+GKtt +++L
  KIR62284.1 39 LVGRSGSGKTTAGRAL 54
                7899**********99 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.018
      AAA_18   3 ltGtpGvGKttlakeL 18 
                 + G +G+GKttla+ +
  KIR62284.1 319 VVGRSGSGKTTLARCV 334
                 8899*********965 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2    0.0084       3.7       2      23 ..      38      59 ..      37      75 .. 0.83
   2 ?    8.1   0.7    0.0076       3.3       3      20 ..     319     336 ..     317     350 .. 0.91
   3 ?   -1.1   0.0       5.6   2.4e+03      52      74 ..     440     461 ..     428     489 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0084
                EEESSTTSSHHHHHHHHHHHHT CS
         AAA  2 llyGppGtGKTllakavakelg 23
                 l+G  G GKT++ +a+  e+g
  KIR62284.1 38 ALVGRSGSGKTTAGRALLGEAG 59
                599***************9986 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0076
                 EESSTTSSHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavak 20 
                 ++G  G GKT+la+ va 
  KIR62284.1 319 VVGRSGSGKTTLARCVAG 336
                 79*************995 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 5.6
                 HHHHTS.TSEEEEEETGGGHHHHH CS
         AAA  52 eakeka.kpsilfiDEidalaksr 74 
                 +a     +p +++ DEi +   + 
  KIR62284.1 440 RA--LLaEPRVVICDEITSGLDTV 461
                 32..22468999999998766555 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0         1   4.4e+02      38      51 ..      37      50 ..      30      57 .. 0.88
   2 ?   -1.1   0.0       2.5   1.1e+03     119     151 ..     185     215 ..     162     252 .. 0.62
   3 ?    6.6   0.0     0.011       4.7      37      62 ..     316     341 ..     308     346 .. 0.90
   4 ?    1.3   0.0      0.45     2e+02     111     158 ..     437     482 ..     410     496 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1
        TniB 38 lllvGdsnnGKtmi 51
                l lvG+s  GKt+ 
  KIR62284.1 37 LALVGRSGSGKTTA 50
                789*********85 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.5
        TniB 119 kvrvLiiDEihnllagsarkqreflnalksLgn 151
                 ++rvL+ DE        + ++r +   l++L +
  KIR62284.1 185 RARVLVADEPTTGQ--DSLTRRDVAHELRTLAD 215
                 56667777654443..34445555555555544 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.011
        TniB  37 nlllvGdsnnGKtmivekFarlhppe 62 
                 +l +vG+s  GKt++++  a lhpp+
  KIR62284.1 316 CLAVVGRSGSGKTTLARCVAGLHPPR 341
                 899*************9999999876 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.45
        TniB 111 vlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipiv 158
                 +l+     ++rv+i DEi + l     ++ ++++++ +L +   +++v
  KIR62284.1 437 ALARALLAEPRVVICDEITSGLDT--VSRDRIVALVDRLRRAHGLALV 482
                 4444445689*********99954..4455566666666666655555 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2     0.014       6.1      42      60 ..      37      55 ..      27      58 .. 0.85
   2 ?    5.6   0.1      0.02       8.9      40      55 ..     315     330 ..     294     334 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.014
                  EEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE 42 llvaGatgsGKStalntLi 60
                  l ++G++gsGK+ta ++L+
    KIR62284.1 37 LALVGRSGSGKTTAGRALL 55
                  5689**********99996 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.02
                   .SEEEE--TTSSHHHH CS
  FtsK_SpoIIIE  40 shllvaGatgsGKSta 55 
                   + l v+G++gsGK+t 
    KIR62284.1 315 GCLAVVGRSGSGKTTL 330
                   5689**********96 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2      0.13        57     131     152 ..      36      57 ..      20      65 .. 0.81
   2 ?    7.7   0.1    0.0037       1.6     103     147 ..     285     332 ..     172     341 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.13
       T2SSE 131 lilvsGgTgsGKttllyallke 152
                 ++ + G  gsGKtt   all e
  KIR62284.1  36 VLALVGRSGSGKTTAGRALLGE 57 
                 5667899********9999987 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0037
       T2SSE 103 ltlddlgaeealk...ekiaevlrkavrerglilvsGgTgsGKttlly 147
                 l++ dl+a+++      ++ + + +av+  g + v G  gsGKttl+ 
  KIR62284.1 285 LRVGDLVAAHRAGarrRTVLRGVTAAVAPGGCLAVVGRSGSGKTTLAR 332
                 44455554444431116666667789999****************985 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0096       4.2      16      34 ..      37      55 ..      31      61 .. 0.85
   2 ?    4.9   0.2     0.035        15      16      29 ..     317     330 ..     314     334 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0096
     Pox_A32 16 lalvGgsGsGktvyLlsLl 34
                lalvG sGsGkt+  ++Ll
  KIR62284.1 37 LALVGRSGSGKTTAGRALL 55
                89**********9766665 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.035
     Pox_A32  16 lalvGgsGsGktvy 29 
                 la+vG sGsGkt+ 
  KIR62284.1 317 LAVVGRSGSGKTTL 330
                 799*********85 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2     0.082        36       1      19 [.      36      54 ..      36      61 .. 0.87
   2 ?    6.1   0.0     0.019       8.3       3      18 ..     318     333 ..     316     385 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.082
         PRK  1 vIgvagsSGaGkttvarkl 19
                v+++ g SG+Gktt  r+l
  KIR62284.1 36 VLALVGRSGSGKTTAGRAL 54
                67899*********88765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.019
         PRK   3 gvagsSGaGkttvark 18 
                 +v g SG+Gktt+ar 
  KIR62284.1 318 AVVGRSGSGKTTLARC 333
                 899*********9986 PP

>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       2.3   9.9e+02      50     103 ..     204     226 ..     157     274 .. 0.60
   2 ?   10.9   0.3   0.00086      0.38      17      75 ..     432     488 ..     417     502 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 2.3
                 -HHHHHHHHHHTT-EE.EEEESSCCCC-S...S-HHHHHHHHHTT-EEEESS.. CS
   Resolvase  50 RpglkrllaalregkgdvlvvekldRLaRsvrdlltlleelrekgvslvsldeg 103
                 R                               d+++ l++l+++g  +v l++ 
  KIR62284.1 204 R-------------------------------DVAHELRTLADAGMAVVLLSHD 226
                 3...............................3333344444444444444422 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00086
                 HHHHHHHHHH-S--..SE...EEEE.S-TT-TT.-HHHHHHHHHHTT-EE.EEEESSCCC CS
   Resolvase  17 erQkealrayakenglkivkefeDkgvSGakle.RpglkrllaalregkgdvlvvekldR 75 
                 e Q++al ++  ++   +   + D+  SG ++  R+ + +l+++lr+ +g +lvv + dR
  KIR62284.1 432 ELQRAALARALLAEPRVV---ICDEITSGLDTVsRDRIVALVDRLRRAHGLALVVISHDR 488
                 679999999988883334...89999*****867*************9998888877777 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.24     1e+02     321     364 ..     166     209 ..     139     253 .. 0.84
   2 ?    0.9   0.2      0.35   1.5e+02     242     264 ..     312     334 ..     303     337 .. 0.83
   3 ?    4.6   0.0     0.026        11     376     418 ..     466     508 ..     428     526 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.24
                 SS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHH CS
  ABC_ATPase 321 edASGStsqAanimealeagakllLiDEDtsAtNlmirDermqe 364
                 ++ SG   q   ++ al a+a++l+ DE t+ +  + r + ++e
  KIR62284.1 166 HQLSGGQQQRLVVAHALLARARVLVADEPTTGQDSLTRRDVAHE 209
                 5679999999999***************9999887777665555 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.35
                 E-SSEEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 242 ipkGvtlIvGggfhGKsTLLeAl 264
                  p G  ++vG+   GK+TL + +
  KIR62284.1 312 APGGCLAVVGRSGSGKTTLARCV 334
                 5778999************9865 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.026
                 HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEEE CS
  ABC_ATPase 376 lvdrvrelykklgvstilvvggsgdyldvAdtvilmeeykpkd 418
                 +v +v +l++ +g+ +++++   +   ++Ad+v+++++ ++ +
  KIR62284.1 466 IVALVDRLRRAHGLALVVISHDRDVVARLADHVVVLDSGQVVE 508
                 45566677788************************99876655 PP

>> DUF927  Domain of unknown function (DUF927)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.12        51     191     213 ..      31      53 ..      10      60 .. 0.84
   2 ?    5.2   0.1     0.031        13     192     215 ..     312     335 ..     304     338 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.12
      DUF927 191 gaeggglhlygeSstGKttalkl 213
                  a g +l l+g+S +GKtta ++
  KIR62284.1  31 VAAGEVLALVGRSGSGKTTAGRA 53 
                 56778899***********9875 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.031
      DUF927 192 aeggglhlygeSstGKttalklAa 215
                 a+gg l ++g+S +GKtt ++ +a
  KIR62284.1 312 APGGCLAVVGRSGSGKTTLARCVA 335
                 689999*************99877 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2     0.086        37       2      22 ..      36      57 ..      35      65 .. 0.76
   2 ?    4.6   0.0     0.051        22       4      18 ..     318     332 ..     316     340 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.086
                EEEEEESTTCCHHHHHHHHH.C CS
        cobW  2 vtvltGflGsGKTtLlnhll.e 22
                v+ l+G  GsGKTt  ++ll e
  KIR62284.1 36 VLALVGRSGSGKTTAGRALLgE 57
                67899*********87777744 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.051
                 EEEESTTCCHHHHHH CS
        cobW   4 vltGflGsGKTtLln 18 
                  ++G  GsGKTtL +
  KIR62284.1 318 AVVGRSGSGKTTLAR 332
                 68999*******965 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.6      0.13        55      26      46 ..      37      57 ..      32      61 .. 0.88
   2 ?    6.9   0.2     0.013       5.9      26      41 ..     317     332 ..     316     335 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.13
       DUF87 26 lAilgsTGsGKSntvavLlee 46
                lA +g++GsGK++  + Ll e
  KIR62284.1 37 LALVGRSGSGKTTAGRALLGE 57
                699**********99888865 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.013
       DUF87  26 lAilgsTGsGKSntva 41 
                 lA++g++GsGK+++++
  KIR62284.1 317 LAVVGRSGSGKTTLAR 332
                 69***********997 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.046        20      18      38 ..      37      57 ..      21      60 .. 0.75
   2 ?    4.3   0.0     0.036        16      36      85 ..     227     273 ..     220     292 .. 0.76
   3 ?   -2.1   0.1       3.2   1.4e+03      19      32 ..     318     331 ..     317     333 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.046
  TrwB_AAD_bind 18 ilivGttGsGKtqalekllra 38
                   +++vG  GsGKt+a ++ll +
     KIR62284.1 37 LALVGRSGSGKTTAGRALLGE 57
                   6899************99965 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.036
  TrwB_AAD_bind  36 lrairargdraivlDltGafvsrfydegkdillnPlDaRsaaWsvfaeik 85 
                    l+ +ra +dr +vlD+ Ga+v++   +  d+l +P D+R  +   +a ++
     KIR62284.1 227 LHLVRAVADRLVVLDA-GAVVEA--GPAADVLAAPRDERTRRLLAAAPAA 273
                    677999*********6.899997..55668*********97765555555 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.2
  TrwB_AAD_bind  19 livGttGsGKtqal 32 
                    ++vG  GsGKt+ +
     KIR62284.1 318 AVVGRSGSGKTTLA 331
                    5799*******975 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.036        16       3      17 ..      36      50 ..      34      55 .. 0.88
   2 ?    4.1   0.3      0.07        31       4      22 ..     317     335 ..     315     348 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.036
                EEEEEESTTSSHHHH CS
       SRP54  3 villvGlqGaGKTtt 17
                v++lvG  G+GKTt+
  KIR62284.1 36 VLALVGRSGSGKTTA 50
                789**********96 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.07
                 EEEEESTTSSHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLa 22 
                 +++vG  G+GKTt +  +a
  KIR62284.1 317 LAVVGRSGSGKTTLARCVA 335
                 579**********876655 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2      0.18        80       3      19 ..      38      54 ..      36      58 .. 0.83
   2 ?    5.9   0.2     0.027        12       4      21 ..     319     336 ..     317     347 .. 0.86
   3 ?    0.0   0.0       1.8   7.8e+02      57      77 ..     431     457 ..     417     475 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.18
                EEE--SSSSHHHHHHHG CS
       AAA_5  3 lLvGppGtgKselaerl 19
                 LvG +G+gK++  + l
  KIR62284.1 38 ALVGRSGSGKTTAGRAL 54
                59*********976655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.027
                 EE--SSSSHHHHHHHGGG CS
       AAA_5   4 LvGppGtgKselaerlaa 21 
                 +vG +G+gK++la+ +a 
  KIR62284.1 319 VVGRSGSGKTTLARCVAG 336
                 69***********98775 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 1.8
                 --------......G-SEEEEESGGG- CS
       AAA_5  57 splvraar......egeilvlDEvera 77 
                 ++l raa       e+++++ DE++  
  KIR62284.1 431 GELQRAALarallaEPRVVICDEITSG 457
                 44555555555559**********865 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   1.2    0.0077       3.4      18      38 ..      34      54 ..      25      66 .. 0.83
   2 ?   -0.6   0.3       2.1     9e+02      74     122 ..     162     223 ..     131     235 .. 0.60
   3 ?    9.3   0.9    0.0019      0.83      17      49 ..     314     345 ..     304     355 .. 0.82
   4 ?    7.0   0.6      0.01       4.4      48     114 ..     394     472 ..     381     521 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0077
      AAA_30 18 drvavltGpAGtGKttalkal 38
                  v +l+G+ G+GKtta +al
  KIR62284.1 34 GEVLALVGRSGSGKTTAGRAL 54
                45999***********98876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.1
      AAA_30  74 akllkrlk.........grarlepgtllivDEagmv....dtkqlaallkaaekagakvilv 122
                  ++ ++l          ++a l+++++l+ DE          +++a+ l+ +++ag+ v+l+
  KIR62284.1 162 RRFPHQLSggqqqrlvvAHALLARARVLVADEPTTGqdslTRRDVAHELRTLADAGMAVVLL 223
                 44444444666667776556677778888888654332224444444445555557777665 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0019
      AAA_30  17 gdrvavltGpAGtGKttalkalreaweaaggrv 49 
                 g  + +++G+ G+GKtt+ + ++ ++  +gg+v
  KIR62284.1 314 G-GCLAVVGRSGSGKTTLARCVAGLHPPRGGTV 345
                 3.47899**************999998888776 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.01
      AAA_30  48 rviglApt..gkaAkvLaeelgieastiakllkrlk.........grarlepgtllivDEagm.vdtkqlaallkaaek 114
                 r+ +l pt    aA+++  e+g++a+ +a+  +rl          +ra l++ +++i DE+   +dt + +++++ +++
  KIR62284.1 394 RLRALPPTraRDAARRVLGEVGLAADVVARRPDRLSggelqraalARALLAEPRVVICDEITSgLDTVSRDRIVALVDR 472
                 4445555411468999888*************9999*******9977888899*******8542566666665555543 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.35   1.5e+02       3      21 ..      38      56 ..      36      70 .. 0.75
   2 ?    5.4   0.1     0.035        15       2      21 ..     317     336 ..     316     346 .. 0.82
   3 ?    0.1   0.0       1.5   6.6e+02      98     161 ..     448     489 ..     431     506 .. 0.51

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.35
                EEE--TTSSHHHHHHHHHH CS
    NTPase_1  3 fiTGppGvGKtTlvkkvle 21
                ++ G++G+GKtT  + +l 
  KIR62284.1 38 ALVGRSGSGKTTAGRALLG 56
                688*********8766665 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.035
                 EEEE--TTSSHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvle 21 
                 +++ G++G+GKtTl + v+ 
  KIR62284.1 317 LAVVGRSGSGKTTLARCVAG 336
                 5789**********988875 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.5
                 EEEE---STTGGG-HHHHHHHHHHHTTTSEEEEE--SS--SHHHHHHHT-TT-EEEE--TTTTT CS
    NTPase_1  98 viviDEiGkmElkskkfkeaveevLksekpvlavihrrkdlalveeirerkdvkvfevteenrd 161
                 v++ DEi                        l ++ r +  alv+++r+ ++  ++ v+ ++rd
  KIR62284.1 448 VVICDEIT---------------------SGLDTVSRDRIVALVDRLRRAHGLALV-VISHDRD 489
                 55555553.....................223344444444455555544333332.3333343 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.9      0.13        56      19      40 ..      37      58 ..      32      66 .. 0.82
   2 ?    6.6   0.3    0.0099       4.3      21      48 ..     319     346 ..     315     349 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.13
  Zeta_toxin 19 illgGqpGAGKselaellkdel 40
                + l+G +G+GK+++ ++l  e 
  KIR62284.1 37 LALVGRSGSGKTTAGRALLGEA 58
                5689*********999988774 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0099
  Zeta_toxin  21 lgGqpGAGKselaellkdelerqgnvvr 48 
                 ++G +G+GK++la+ ++  + ++g+ v 
  KIR62284.1 319 VVGRSGSGKTTLARCVAGLHPPRGGTVG 346
                 789************9999988888775 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2      0.38   1.7e+02       9      26 ..      33      50 ..      27      58 .. 0.84
   2 ?    5.5   0.9     0.045        20       7      30 ..     311     334 ..     307     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.38
      AAA_19  9 kekvllvtaGpGtGKTrv 26
                + +vl++++  G+GKT+ 
  KIR62284.1 33 AGEVLALVGRSGSGKTTA 50
                678999**********96 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.045
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhi 30 
                  ++ ++l+v++  G+GKT++ +++
  KIR62284.1 311 VAPGGCLAVVGRSGSGKTTLARCV 334
                 478999************988775 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   0.00068       0.3      57     121 ..     117     181 ..      76     183 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00068
      DinB_2  57 rpgldpltp...psaaealaylaevrarllallealtdadldrpltaphpglgkltlgdvllfvlqHe 121
                 +++++p++p    +a+ ++ ++++vr+++ ++l++ +  ++dr       +  +l++g+  ++v++H 
  KIR62284.1 117 PERRTPGGPpgdATARATVNRRSAVRRAVADVLARVDL-PADREFLRR--FPHQLSGGQQQRLVVAHA 181
                 23333444422268888999***************887.888888888..9999**********9995 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2      0.18        80       3      20 ..      38      55 ..      36      74 .. 0.80
   2 ?    4.1   0.5      0.12        51       3      20 ..     318     335 ..     316     377 .. 0.86
   3 ?    0.5   0.0       1.5   6.5e+02      50      80 ..     423     453 ..     395     462 .. 0.61

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.18
      AAA_28  3 vitGgestGKTtlleaLa 20
                +++G +++GKTt  +aL 
  KIR62284.1 38 ALVGRSGSGKTTAGRALL 55
                68999********99996 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.12
      AAA_28   3 vitGgestGKTtlleaLa 20 
                 +++G +++GKTtl++  a
  KIR62284.1 318 AVVGRSGSGKTTLARCVA 335
                 78999********98666 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 1.5
      AAA_28  50 edllafaervleeqleeeaaa..aankvlfcDr 80 
                 +++ ++  + l+  ++++a+a  a+++v++cD 
  KIR62284.1 423 RRPDRLSGGELQ--RAALARAllAEPRVVICDE 453
                 444555555444..44444445699*******3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              41  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.49
# Mc/sec: 3296.98
//
Query:       KIR62285.1  [L=89]
Description: transglycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.72   10.2   5.6       0.58   10.5   1.8    2.4  2  DUF2929        Protein of unknown function (DUF2929)


Domain annotation for each model (and alignments):
>> DUF2929  Protein of unknown function (DUF2929)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.8   3.2e-05      0.58      16      52 ..      11      49 ..       4      52 .. 0.84
   2 ?    0.2   0.1     0.055   9.8e+02      32      46 ..      67      81 ..      57      86 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.2e-05
     DUF2929 16 vvgYIgsaLtgv..tydfttalilavvfgvlviliiali 52
                vvg +++aL     +  +t  l+l++v+gv+++l + + 
  KIR62285.1 11 VVGLVVGALGRLavPGRPTAPLWLTLVVGVVAALAGSVV 49
                8999*****99843556****************988765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.055
     DUF2929 32 ttalilavvfgvlvi 46
                ++a++ +v + ++++
  KIR62285.1 67 VQAGMAGVGVVLVAA 81
                556666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 665.05
//
Query:       KIR62286.1  [L=441]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-21   77.1   0.0    3.7e-21   75.7   0.0    1.7  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    3.4e-14   52.6   1.5    1.1e-13   51.0   1.5    1.9  1  HisKA        His Kinase A (phospho-acceptor) domain
    1.1e-10   41.7   4.6    1.9e-10   40.9   0.2    3.0  3  HAMP         HAMP domain
     0.0016   18.3   0.0     0.0027   17.5   0.0    1.3  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
     0.0025   17.8   0.1     0.0077   16.2   0.1    1.9  1  HATPase_c_2  Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         4   1.4e+04      38      63 ..      80     109 ..      61     129 .. 0.65
   2 !   75.7   0.0     1e-24   3.7e-21       4     109 ..     332     437 ..     330     440 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4
                 EEEEEEESS..SSSTTHHHTGTCS..TTCH CS
   HATPase_c  38 lvisveDnG..iGipkedlkklfe..kfsq 63 
                  + ++ D+G    +p+e +++++   + +q
  KIR62286.1  80 WHARIADSGltAAVPPELQQLVGSgqPAVQ 109
                 555677777666667777776654345444 PP

  == domain 2  score: 75.7 bits;  conditional E-value: 1e-24
                 HHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH..HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTT CS
   HATPase_c   4 krLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq..ddstkrggggtGlGlsivkklvelmgGeiwvesepgr 100
                 +r+ q++ nl+dNav++   ag + v+++++ d+ vi+v D+G+G+p+ed+  +f++f++  +++++  g gtGlGl++v + +  +gG+  v+++pg+
  KIR62286.1 332 RRVAQVLANLLDNAVRY--GAGPVAVRLSRDGDTGVIEVDDDGPGVPVEDRAAIFDRFVRgrAAHARGAGDGTGLGLALVAQHAAAHGGTAGVDDRPGG 428
                 7999************8..79********7779***************************9665666668************6666************* PP

                 EEEEEEEEE CS
   HATPase_c 101 Gttftftlp 109
                 G +f++ lp
  KIR62286.1 429 GARFRVALP 437
                 *****9988 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   1.5     3e-17   1.1e-13       3      66 ..     226     290 ..     224     291 .. 0.94

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 3e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC...T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkre.gklteelkeyletiesearrldhlvedlLdlsriea 66 
                 +rf+a+v+HELr PL ++ ++a++L+r+ +  +e+ + +   + +e++r ++lv+dl dl+r ++
  KIR62286.1 226 RRFAADVSHELRSPLQTLAAAASVLQRRrEHHDERTAVAAGLVADEIDRFQRLVNDLIDLARSDQ 290
                 79***********************9988677899999************************986 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.2   1.2e+04       9      21 ..     136     148 ..     134     151 .. 0.69
   2 !   40.9   0.2   5.4e-14   1.9e-10       3      52 ..     170     219 ..     168     220 .. 0.96
   3 ?    1.4   0.2      0.12   4.4e+02       6      37 ..     236     272 ..     232     284 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.2
                 HHHHHHHHHHHHT CS
        HAMP   9 PLrrLaraarria 21 
                 +L +L+r+ +++a
  KIR62286.1 136 SLWELERTFQALA 148
                 5667777777776 PP

  == domain 2  score: 40.9 bits;  conditional E-value: 5.4e-14
                 HHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   3 arrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 +r  lrPL  +a+aa++iaaGd+++rl++ ++  + +L  +fN+M+d+L 
  KIR62286.1 170 TRHGLRPLTAVADAAEKIAAGDVTARLDPATDPDLTRLSTSFNHMVDQLA 219
                 7999********************************************96 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.12
                 THHHHHHHHHHHHHHTTT....BTSSTCCT.TSSSHH CS
        HAMP   6 ilrPLrrLaraarriaaG....dldtrlpv.sgrDEi 37 
                 +  PL+ La+aa  +++     d +t +      DEi
  KIR62286.1 236 LRSPLQTLAAAASVLQRRrehhDERTAVAAgLVADEI 272
                 668*********9888643322322224443556665 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.5e-07    0.0027       4      62 ..     335     393 ..     332     416 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7.5e-07
  HATPase_c_3   4 ekAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknal.rlatsske 62 
                   ++la l+dN++   a  v + ++++ g+tg i + DdG G++ e+    + r+ + +  
   KIR62286.1 335 AQVLANLLDNAVRYGAGPVAVRLSRD-GDTGVIEVDDDGPGVPVEDRAAIFdRFVRGRAA 393
                  579**********************7.79**************99877766456555555 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   2.1e-06    0.0077      37     107 ..     339     411 ..     294     416 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.1e-06
  HATPase_c_2  37 eEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep.........keslkegGrGlalikg 107
                  + ++ Nav+++      gpv vrl++d+++ ++ev D+Gpg ++e+++                 + ++  G+Glal+++
   KIR62286.1 339 ANLLDNAVRYGA-----GPVAVRLSRDGDTGVIEVDDDGPGVPVEDRAAIFD--RfvrgraahaRGAGDGTGLGLALVAQ 411
                  556678888888.....79*********************988876543322..13455688888999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3327.65
//
Query:       KIR62287.1  [L=335]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-28  100.4   0.4    2.3e-28   99.6   0.4    1.4  1  Peripla_BP_3  Periplasmic binding protein-like domain
    7.7e-17   60.8   0.6    1.9e-16   59.6   0.6    1.7  1  LacI          Bacterial regulatory proteins, lacI family
    5.3e-10   39.2   0.0    6.8e-10   38.8   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
  ------ inclusion threshold ------
      0.065   13.3   0.0       0.15   12.1   0.0    1.7  1  HTH_3         Helix-turn-helix
       0.13   12.1   3.2       0.22   11.4   0.1    2.7  3  TetR_N        Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.4   6.3e-32   2.3e-28       1     166 []     168     330 ..     168     330 .. 0.88

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 6.3e-32
                   ..HHHHCS--EEEEEE...--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SE..EEEESSCCHHHHHHHH CS
  Peripla_BP_3   1 vehLvelGhrriafig...gegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalPt..AviaasDelAlgvlqa 92 
                   vehL+ lGhrria++g     +drg+ ++++ + g  +a+++lg++  ++++ + ++a+  ++ +    ++      P+  ++i++++++   vl+ 
    KIR62287.1 168 VEHLAGLGHRRIALLGapaAVYDRGTGFAHRTRNGILDAAARLGVDTVVRPCEEGTAAVRRELVELF--ER-----WPDlsGLIVQNESAVGPVLAT 257
                   79***************998999999*************************9888775544444422..33.....25455**************** PP

                   HCCTT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  93 lreaglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   l   g rvPed+sv+g+  + +a+ +sP lT+v +p+ee+G++a+ ll++ + ge+ p  + ll+p+l++R+St
    KIR62287.1 258 LPTLGRRVPEDVSVVGICPDQFAEQASPRLTSVPLPAEEVGQQAVSLLMRKVHGEPVPDAT-LLEPRLTIRDST 330
                   ****************9999********************************666655555.67899******8 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.6   5.2e-20   1.9e-16       1      46 []       3      48 ..       3      48 .. 0.99

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 5.2e-20
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                ti DVAr AGV ++TVS+vL++k+ +se tr+rV+a ++ l+Y+Pn
  KIR62287.1  3 TISDVARHAGVAVSTVSYVLSGKRAISEVTRNRVLASIRMLGYHPN 48
                8********************************************9 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.9e-13   6.8e-10      12     270 ..      73     319 ..      59     328 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 1.9e-13
                   TSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHHHHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EEEE-HHHHHHH CS
  Peripla_BP_1  12 dePffldlvkgitkaakehgvdvlllaageeedlakaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPcvipddtqagee 108
                   ++P  ++   ++  +a+  + dvll+  +e++  +++i   ++  +dgl++     + +++    e g p ++++  +d   g+ cv  d  +ag  
    KIR62287.1  73 QVPVVMQFAMAVVTTARTVEHDVLLVTSDEGPAGLRRIA--ASAMVDGLLLMDVEMHDSRVPLLRELGRPSVLIGFPADPT-GLTCVDLDFHRAGVV 166
                   678888888999999*****************9999886..6889*******999998999999999********997666.*************** PP

                   HHHHHHHHHHHHTGEEEEEE-T.....TSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHHHHHHHHH CS
  Peripla_BP_1 109 stqkLiaeghkrpiallegpes.....altakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaalGavlalk 200
                     ++L   gh+r iall++p+       + a++ ++G l+a a  G    d  v+ + +   + +  l el+e+ P+++ ++ +n++a+      l 
    KIR62287.1 167 CVEHLAGLGHRR-IALLGAPAAvydrgTGFAHRTRNGILDAAARLGV---DTVVRPCEEGTAAVRRELVELFERWPDLSGLIVQNESAVGPVLATLP 259
                   ************.****998652222256789999************...999**************************888888876655555566 PP

                   HTT.--GGGEEEEEESSGGGH..HHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-SEEEE--EEE CS
  Peripla_BP_1 201 keGrlkikeevdsfiesvvvy..dgLkkaqdtilelsplaviqlprellGrkasdmvlqkinkerehprvll 270
                     G  + +e+v     svv+   d++          + l++  lp+e++G++a + ++ k+ +++ +p+ +l
    KIR62287.1 260 TLG-RRVPEDV-----SVVGIcpDQF-----AEQASPRLTSVPLPAEEVGQQAVSLLMRKV-HGEPVPDATL 319
                   778.799****.....7777633455.....3445789**********************9.7777777665 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.3e-05      0.15      11      37 ..       3      29 ..       1      32 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.3e-05
                HHHHHHHHHTSSHHHHHHHHTTSSCSB CS
       HTH_3 11 sqeeLAeklGvsrstisriEnGernPs 37
                ++ ++A+ +Gv +st+s   +G+r++s
  KIR62287.1  3 TISDVARHAGVAVSTVSYVLSGKRAIS 29
                7899********************998 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   6.1e-05      0.22      17      42 ..       2      27 ..       1      30 [. 0.85
   2 ?   -2.2   0.0         1   3.7e+03      17      28 ..     105     116 ..     102     117 .. 0.80
   3 ?   -0.3   0.1      0.27   9.6e+02       1       8 [.     203     210 ..     203     212 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.1e-05
                --HHHHHHHHTSSHHHHHHHTSSHHH CS
      TetR_N 17 ttvreIAkrAGvskgalYryFpsKee 42
                +t++++A++AGv+ +++ +  ++K++
  KIR62287.1  2 VTISDVARHAGVAVSTVSYVLSGKRA 27
                79**************9886666665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1
                 --HHHHHHHHTS CS
      TetR_N  17 ttvreIAkrAGv 28 
                 +++r+IA++A v
  KIR62287.1 105 AGLRRIAASAMV 116
                 57899**99965 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.27
                 HHHHHHHH CS
      TetR_N   1 IldaArel 8  
                 IldaA++l
  KIR62287.1 203 ILDAAARL 210
                 9*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2385.12
//
Query:       KIR62288.1  [L=406]
Description: ROK family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-45  154.0   0.0    7.6e-45  153.6   0.0    1.1  1  ROK        ROK family
    2.4e-06   27.3   0.8    2.4e-06   27.3   0.8    3.0  3  MarR_2     MarR family
    1.9e-05   24.4   0.2    1.9e-05   24.4   0.2    3.1  4  HTH_IclR   IclR helix-turn-helix domain
    0.00022   21.6   0.1    0.00051   20.5   0.1    1.6  1  HTH_27     Winged helix DNA-binding domain
    0.00026   20.9   0.4    0.00088   19.2   0.1    2.0  2  HTH_Crp_2  Crp-like helix-turn-helix domain
    0.00045   19.7   0.0    0.00091   18.7   0.0    1.5  1  HTH_24     Winged helix-turn-helix DNA-binding
     0.0021   17.9   0.0      0.004   17.0   0.0    1.4  1  MarR       MarR family
  ------ inclusion threshold ------
      0.016   15.3   0.6      0.076   13.1   0.6    2.2  1  HTH_20     Helix-turn-helix domain
       0.02   14.8   0.0      0.083   12.9   0.0    2.1  2  HTH_36     Helix-turn-helix domain
      0.041   13.5   0.1       0.07   12.7   0.1    1.3  1  SMC_ScpB   Segregation and condensation complex subunit ScpB


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.6   0.0   4.2e-48   7.6e-45       2     291 ..      90     394 ..      89     397 .. 0.89

  Alignments for each domain:
  == domain 1  score: 153.6 bits;  conditional E-value: 4.2e-48
                 EEEEE-SSEEEEEEEETTS-EEEEEEE..EEHCCHHCCHHHHHHHHHHCCC....HCCHTEEEEEEEEESSEEETTCCEBSSGGCGCCCCTTHHHHHHH CS
         ROK   2 igidiGgtkialalvdeegeilarekv..etptetteetlvdaiaelvdea....erkadeliavgigspGlisdksgkivstpnitwenfdlveklee 94 
                 +g+++G++++a+  vd  g+ l + +     p+ t++et+  a+a+l  +a    + + +++ ++ +g+pGl+ d  g +   p ++w++++l+++l +
  KIR62288.1  90 LGLQVGADELAAVAVDLGGNRLLTWRRafAAPAATPAETV-RALAALARRAtarvAGEGRAVLGLTVGVPGLV-DAAGCVPLSPALGWRDVPLADQLRA 186
                 6999****************99987776788999988888.666666555510004556678899********.9***********************9 PP

                 HH...TS-EEEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHHCHTC CS
         ROK  95 rl...nvpvevenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqgClEtlasgralekraqq 190
                 +l   + +v v+n++n aalaE+  ga++++++++ +t g G+G+G i++g+l++G++G+age+GH+ ldp g+ c+CG+ gClE+l+  +a+ +r+  
  KIR62288.1 187 ALrdpDFTVAVDNEANLAALAEQRHGAQAGATDLVHLTGGAGIGGGAIVDGRLLRGSRGFAGEIGHLCLDPTGPACACGRSGCLEALVGLPAVVRRLLP 285
                 98333577***************************************************************************************9998 PP

                 ........CGTTS-HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHH.HHHHHHHHHCCTTTTCCCT-EEEE-S-ST CS
         ROK 191 ........kgekleakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadkll.eairklvkkylnkklevpvveivaaklgd 280
                         +    e++ +  la + d++  + + + +++l++a+a l+ l++p+a+ +gG +      l +a r++++++ +  ++  + ++ a+ lg 
  KIR62288.1 286 dtaedgpvTDFLPELDRLKALAGQDDPTVRAGLAETGRHLGHAVAVLADLLNPEAVLVGGHLATLGPWLlPAARAELAARTLAPEAGGC-RLEASTLGG 383
                 888888875555677778889********************************************99998*******999999999988.8******** PP

                 THHHHHHHHHH CS
         ROK 281 kagllGaaaLa 291
                  a++lG a  a
  KIR62288.1 384 TAAALGGATAA 394
                 ******98655 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.8   1.4e-09   2.4e-06       9      54 ..      23      66 ..      19      72 .. 0.91
   2 ?    0.1   0.1      0.43   7.7e+02       7      20 ..     128     141 ..     123     155 .. 0.79
   3 ?   -1.2   0.0       1.1     2e+03       9      30 ..     316     335 ..     308     337 .. 0.67

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.4e-09
                HHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2  9 rvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54
                 vL +++ + +  ++ +++a+r+gl k++vs ++ +L ++ Lv+++
  KIR62288.1 23 VVLRHVRVHAP--CSRADIAARTGLNKATVSSLVGELIERRLVRET 66
                5999******9..******************************876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.43
                 HHHHHHHHHCTTTS CS
      MarR_2   7 qarvLaaLgrrpgr 20 
                   r+LaaL+rr   
  KIR62288.1 128 TVRALAALARRATA 141
                 57999999999863 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.1
                 HHHHHHHCTTTSEEEHHHHHHH CS
      MarR_2   9 rvLaaLgrrpgrdltvgelarr 30 
                   La+ gr+ g   +v+ la+ 
  KIR62288.1 316 AGLAETGRHLG--HAVAVLADL 335
                 44777777777..677777765 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.2     1e-08   1.9e-05      16      51 ..      32      66 ..      19      67 .. 0.84
   2 ?   -3.1   0.1         4   7.2e+03      21      26 ..     132     137 ..     123     140 .. 0.52
   3 ?   -0.4   0.3      0.58     1e+03       9      29 ..     203     225 ..     203     226 .. 0.82
   4 ?   -3.2   0.0       4.3   7.7e+03       9      19 ..     303     316 ..     303     327 .. 0.62

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1e-08
                BSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR 16 pqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                ++  + +++A+rtgl+k+tv+ l+  L+e+++v+  
  KIR62288.1 32 AP-CSRADIAARTGLNKATVSSLVGELIERRLVRET 66
                55.4779**************************975 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4
                 HHHHHH CS
    HTH_IclR  21 lselAr 26 
                 l+ lAr
  KIR62288.1 132 LAALAR 137
                 344444 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.58
                 HCT-CTTBSS..-BHHHHHHHHT CS
    HTH_IclR   9 Ldalaeapqe..ltlselArrtg 29 
                 L alae++ +   + ++l + tg
  KIR62288.1 203 LAALAEQRHGaqAGATDLVHLTG 225
                 78999999995559999999887 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 4.3
                 HCT-CTTBSS...- CS
    HTH_IclR   9 Ldalaeapqe...l 19 
                 L+ala ++ +    
  KIR62288.1 303 LKALAGQDDPtvrA 316
                 67888888773333 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   2.8e-07   0.00051       5      54 ..      21      69 ..      18      75 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.8e-07
      HTH_27  5 qalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgde 54
                 a+vL+++r  +++ + ad++ r+ ++++++s+ + +L+e+ Lv +tg  
  KIR62288.1 21 RAVVLRHVR-VHAPCSRADIAARTGLNKATVSSLVGELIERRLVRETGLT 69
                589******.8899999***************************888764 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   4.9e-07   0.00088      17      54 ..      29      67 ..      15      78 .. 0.81
   2 ?   -2.8   0.0       3.6   6.4e+03      34      48 ..     124     138 ..     122     147 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 4.9e-07
                EEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET CS
   HTH_Crp_2 17 eielpltqeelAsmlGltretvsrilseLkreglis.rg 54
                +++ p +++++A++ Gl+  tvs + +eL ++ l++ +g
  KIR62288.1 29 RVHAPCSRADIAARTGLNKATVSSLVGELIERRLVReTG 67
                6889*******************************9544 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.6
                 SHHHHHHHHHHHHHT CS
   HTH_Crp_2  34 tretvsrilseLkre 48 
                 t+  + r+l++L r+
  KIR62288.1 124 TPAETVRALAALARR 138
                 777788888888876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   5.1e-07   0.00091       9      47 ..      25      63 ..      23      64 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 5.1e-07
      HTH_24  9 LelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                L+ ++ ++ +s +++A r+gl ++tv+  + +L+e  l+
  KIR62288.1 25 LRHVRVHAPCSRADIAARTGLNKATVSSLVGELIERRLV 63
                888899999*************************98776 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.2e-06     0.004       5      55 ..      21      71 ..      19      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.2e-06
                HHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTS CS
        MarR  5 qfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRskspeD 55
                + v+Lr ++ + p+s +++a + g++k+tv+ ++ +L+++ l++ +  +e+
  KIR62288.1 21 RAVVLRHVRVHAPCSRADIAARTGLNKATVSSLVGELIERRLVRETGLTEN 71
                6789**********************************9999886666655 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.6   4.2e-05     0.076      11      57 ..      20      66 ..      19      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.2e-05
                HHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 11 vRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevv 57
                 R+ +lr+ +  ++ + +++a+r +l k+t+s  + +L e  Lv+ +
  KIR62288.1 20 NRAVVLRHVRVHAPCSRADIAARTGLNKATVSSLVGELIERRLVRET 66
                5999****************************999999999999865 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.6e-05     0.083      27      52 ..      35      60 ..      30      63 .. 0.89
   2 ?   -3.3   0.0       5.1   9.2e+03       3      15 ..     336     348 ..     336     350 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.6e-05
      HTH_36 27 sqetlakrlglsknTvsraikeLeql 52
                s +++a+r+gl+k Tvs+ + eL++ 
  KIR62288.1 35 SRADIAARTGLNKATVSSLVGELIER 60
                679********************986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.1
      HTH_36   3 Lspsaklllgsla 15 
                 L+p+a l+ g+la
  KIR62288.1 336 LNPEAVLVGGHLA 348
                 8999****99997 PP

>> SMC_ScpB  Segregation and condensation complex subunit ScpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.9e-05      0.07      88     137 ..      24      77 ..      15      82 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.9e-05
    SMC_ScpB  88 tLaiIaykqpvtraeieeiRGvn...sdsvvrtLlerglieekgrkee.pgrpi 137
                 +L  + ++ p++ra+i++  G n   ++s+v +L+er+l++e g +e+  grp+
  KIR62288.1  24 VLRHVRVHAPCSRADIAARTGLNkatVSSLVGELIERRLVRETGLTENrIGRPA 77 
                 6888999***********99977656899**************97776578876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2737.69
//
Query:       KIR62289.1  [L=697]
Description: beta-galactosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-121  406.4   0.0     4e-120  401.6   0.0    2.0  1  Glyco_hydro_42   Beta-galactosidase
    8.5e-49  165.9   0.0    1.9e-48  164.7   0.0    1.6  1  Glyco_hydro_42M  Beta-galactosidase trimerisation domain
    8.2e-09   35.1   0.0    2.1e-08   33.8   0.0    1.8  1  Glyco_hydro_42C  Beta-galactosidase C-terminal domain
     0.0049   15.9   0.0      0.013   14.5   0.0    1.6  2  Glyco_hydro_14   Glycosyl hydrolase family 14
  ------ inclusion threshold ------
      0.076   13.0   0.7        4.3    7.3   0.0    2.9  3  DUF4434          Domain of unknown function (DUF4434)
       0.36   10.9   2.8         13    5.9   0.0    3.0  3  DUF5632          Family of unknown function (DUF5632)


Domain annotation for each model (and alignments):
>> Glyco_hydro_42  Beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  401.6   0.0  1.3e-123    4e-120       1     373 [.      12     415 ..      12     416 .. 0.94

  Alignments for each domain:
  == domain 1  score: 401.6 bits;  conditional E-value: 1.3e-123
                     E--GGGS-CCHHHHHHHHHHHHT--EEEE-TT-HHHH-SBTTB---HHHHHHHHHHHCTT-EEEEE-STTS--HHHHHH-GGGS-B-TTS-B--S CS
  Glyco_hydro_42   1 dYnPeqwpeeaweedirlmkeagvnvvrlgefaWaklePeegkydFewLdevldllekagikviLatptaapPaWlvkkyPeilavdadgskrkf 95 
                     d+nPeqwpe++w ed+ lm++a+vn+v++g+faW++leP  g+ydF+wLd+vldll+++g+ ++Latpta+pP W++ ++P +l+v+adg + ++
      KIR62289.1  12 DWNPEQWPERVWAEDVALMRRARVNLVTVGVFAWSRLEPAPGRYDFGWLDRVLDLLADNGVGAALATPTASPPPWFSLAHPGALPVTADGVRLHH 106
                     78********************************************************************************************* PP

                     SSS----TT-HHHHHHHHHHHHHHHHHHTT-TTEEEEE-SSSTTTTS--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S CS
  Glyco_hydro_42  96 gsrqhiclsspvyrekvakivealaerYkdhpavilwhidnEygchecycetceeaFrkwlkekYgtidelneawgtafWsqeysdfeeielPse 190
                     gsr  +c   p+yr ++++i+  la+rY++hpa++lwh++nEyg+  c+ce+++ aFr wl+ ++g++d+ln+aw t+fWsq+ysd+ +i +P+ 
      KIR62289.1 107 GSRDTYCAAAPAYRAAARRIAGVLADRYAHHPALALWHVHNEYGT-VCHCEHAAVAFRAWLAGRHGSLDALNDAWTTSFWSQHYSDWAQISTPRA 200
                     *********************************************.************************************************* PP

                     -SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT.--SS-HHHHGGGSSSEEEEE-HH.........---HHHHH...... CS
  Glyco_hydro_42 191 lseeenpskildykrFssdqilefvkaeaeilreyspdipvttnfmgsafkdldyvklakeldivswdsYpt.........rskeekee...... 270
                     ++  +np++ ld++rF sd++l  + ++++ lr+++p++pvttn++   +  +d++++a+e+d+vs d+Yp+         +      +      
      KIR62289.1 201 TQYLANPGQLLDFRRFWSDTLLAAYAEQRDLLRAANPAVPVTTNYVLGDWVPVDHARWAAEVDLVSIDHYPSavdgaaeeqT------Alaadla 289
                     *********************************************9999***********************8875443330......2556677 PP

                     ....................-TTHHHHHHHHHHHH....TTT-.EEEEEE--S--SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-SB--SSS CS
  Glyco_hydro_42 271 ....................kldelalkhdlyrsl....kkgkpflvmEqqpsavnwapvnkakapGavrlwslqavAhGadavlyFqwrqsrgg 341
                                         ++++++   d  r +    ++g  +l+mE++p  +  a   ++k+pG +++ sl++vA+G+   +yFqwr   gg
      KIR62289.1 290 rgwarhgararaaadptadaSAHRARADGDGRRPVpgdaADGSAWLLMESAPNLIYTAGRMHTKEPGRMARHSLAHVARGSRGAMYFQWRAPVGG 384
                     77777777777788888865666666677788888888899************9999************************************** PP

                     TTTTS--SB-TTS.-B-HHHHHHHHHHHHHHT CS
  Glyco_hydro_42 342 sEkfhsgvlehvgsektrvfrevkevgeelkk 373
                     +E fhs++++h+g +++rvfre+ e+g  l++
      KIR62289.1 385 AERFHSALVPHAG-PDSRVFRETVELGAILDR 415
                     *************.************988775 PP

>> Glyco_hydro_42M  Beta-galactosidase trimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.7   0.0   6.5e-52   1.9e-48       1     202 [.     426     623 ..     426     627 .. 0.97

  Alignments for each domain:
  == domain 1  score: 164.7 bits;  conditional E-value: 6.5e-52
  Glyco_hydro_42M   1 aevAivfdweskwaiesqegpssrdldyrsevrkyYrallelgvpvDvvseeadlsgYklvvaPtlylvseelvkkleafvenGGtlvltylsG 94 
                      a+vAi +d+ s wa+++   ps + l++  ev++ +ral+++g   Dvv + +  ++Y l+v+P+lyl+s++++  +  +v+ GG+lv+t lsG
       KIR62289.1 426 ASVAIGWDAASGWALQHPGLPS-QRLHHHGEVAAAHRALWRAGFGCDVVLPGDPVDRYALLVLPALYLASDDAAAWARSYVAGGGHLVVTWLSG 518
                      79****************9999.999******************************************************************** PP

  Glyco_hydro_42M  95 vvdendrihlggvpgpLrellGikveeldtlpeeeevevsaegktyearlwseilepetaevlatyatdfyagtpAvtrnnygkGkaiYvgsrl 188
                      v de+ r+ +gg+pg++r++lG++vee+ +l +++ev +   g     r w+e +   +aev+  ya+++ ag+pAvtr++ g G+a+Yv++r+
       KIR62289.1 519 VADEHARVRTGGYPGAFRDVLGVRVEEFHPLADGDEVPLGGGGVG---RIWAESVGLAGAEVVRAYAAGVLAGQPAVTRHRHGAGTAWYVSTRP 609
                      ****************************************76766...********************************************** PP

  Glyco_hydro_42M 189 eddlldaLlkklle 202
                      +d+ ++ Ll++++ 
       KIR62289.1 610 DDETYRRLLTDAAL 623
                      *********99875 PP

>> Glyco_hydro_42C  Beta-galactosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   6.9e-12   2.1e-08       1      58 []     637     692 ..     637     692 .. 0.98

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 6.9e-12
                      TEEEEE....ETTEEEEEE-SSS-EE----TT-EEEES-......SEE-TTEEEEEE- CS
  Glyco_hydro_42C   1 gvevqrRengegrylFvlNfsneevtvtlpasagdlltgelaeggvtlePygvaVlre 58 
                      gve+ rR++  + +lF+lN+++   +v  pa + +lltg l++  v++++ gvaV+re
       KIR62289.1 637 GVEAVRRRGTAASWLFLLNHTDRAHRV--PAAGVELLTGALVDTAVEVPAGGVAVVRE 692
                      89*************************..99*************************97 PP

>> Glyco_hydro_14  Glycosyl hydrolase family 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.2e-06     0.013     180     229 ..     152     206 ..     129     236 .. 0.77
   2 ?   -2.5   0.0      0.62   1.9e+03     233     272 ..     504     543 ..     495     545 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.2e-06
  Glyco_hydro_14 180 qayteyaksslrayvedkygsldkvnkawGtklisea.....ainlPedgeqflr 229
                      ++ e+a  ++ra++  ++gsld +n aw t+  s+      +i  P  ++ +  
      KIR62289.1 152 VCHCEHAAVAFRAWLAGRHGSLDALNDAWTTSFWSQHysdwaQISTPRATQYLAN 206
                     588899999***********************98876444456667766665554 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.62
  Glyco_hydro_14 233 ynseyGkdflewyqgvleehldligeaakkafdssfgvki 272
                     y +  G   + w +gv +eh+ +      +af  ++gv++
      KIR62289.1 504 YVAGGGHLVVTWLSGVADEHARVRTGGYPGAFRDVLGVRV 543
                     55666888899**********9999999999999999887 PP

>> DUF4434  Domain of unknown function (DUF4434)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.04   1.2e+02      15      38 ..      16      39 ..       2      51 .. 0.82
   2 ?    7.3   0.0    0.0015       4.3     104     134 ..     122     152 ..     105     181 .. 0.82
   3 ?   -1.8   0.0      0.92   2.8e+03     117     137 ..     595     615 ..     592     629 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.04
                ----HHHHHHHHHHHHHTT--EEE CS
     DUF4434 15 qnltdkqWkeklrelkelgmntli 38
                +++++  W+e+++ ++++ +n + 
  KIR62289.1 16 EQWPERVWAEDVALMRRARVNLVT 39
                79**************99998775 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0015
                 HHHHHHHHHHHHTTT-TTEEEEEE----SS- CS
     DUF4434 104 lakrvaeelakkYghhkafyGWYiseEidna 134
                  a+r+a  la++Y hh+a++ W + +E +  
  KIR62289.1 122 AARRIAGVLADRYAHHPALALWHVHNEYGTV 152
                 56789999******************98765 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.92
                 TT-TTEEEEEE----SS--TT CS
     DUF4434 117 ghhkafyGWYiseEidnanke 137
                 ++h a  +WY+s   d+ +++
  KIR62289.1 595 HRHGAGTAWYVSTRPDDETYR 615
                 4588999*****988877665 PP

>> DUF5632  Family of unknown function (DUF5632)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0043        13      25      44 ..     274     293 ..     269     303 .. 0.83
   2 ?   -3.6   0.1       4.1   1.2e+04      35      44 ..     430     439 ..     421     447 .. 0.67
   3 ?    3.8   0.2     0.019        58      17      65 ..     597     646 ..     591     659 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0043
     DUF5632  25 vGeraDgttllvtDlasGWi 44 
                 v   a+++t l+ Dla GW 
  KIR62289.1 274 VDGAAEEQTALAADLARGWA 293
                 55667899***********6 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.1
     DUF5632  35 lvtDlasGWi 44 
                 +  D asGW 
  KIR62289.1 430 IGWDAASGWA 439
                 4568899996 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.019
     DUF5632  17 qeprLaWavGeraDgttl..lvtD..lasGWiPpgvelpagvtLleParrsge 65 
                   ++ aW v +r D++t   l tD  la G  P   + pagv+     rr+g+
  KIR62289.1 597 HGAGTAWYVSTRPDDETYrrLLTDaaLAAGAAPTCPAAPAGVEA---VRRRGT 646
                 556789********988555999977899*99999999999864...455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4709.63
//
Query:       KIR62290.1  [L=402]
Description: acetyl xylan esterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-23   82.6   0.1    6.5e-23   80.8   0.0    2.0  2  CE2_N          Carbohydrate esterase 2 N-terminal
      1e-14   54.7   6.8    3.1e-14   53.1   6.8    1.9  1  CBM_2          Cellulose binding domain
    3.3e-11   43.9   2.3    3.3e-11   43.9   2.3    1.8  2  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
    3.7e-08   33.6   0.0    5.5e-08   33.0   0.0    1.3  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase
  ------ inclusion threshold ------
      0.013   15.5   1.5      0.096   12.6   0.2    2.5  2  Phage_T4_gp36  Phage T4 tail fibre


Domain annotation for each model (and alignments):
>> CE2_N  Carbohydrate esterase 2 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   1.8e-26   6.5e-23       2     110 .]      79     180 ..      78     180 .. 0.95
   2 ?   -2.1   0.0         1   3.7e+03      15      53 ..     237     271 ..     231     286 .. 0.73

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 1.8e-26
                 ES--EE-TTS-EEE-STT-EEEEEEEEEEEEEEEEE..SSS-EEEEEEETTS--EEEEE-SS-EEEEEEEEEEEEEEEEEEEE-S-GGG--EEEEEEEE CS
       CE2_N   2 iGRvdfsdpgaprfawpGtsvefrftGtslsvrlkdkedkgknrlaviiDgkrvkdlkldgeektytlaeglepgehtvrlvkrtEaeagkteflgfvl 100
                  GRv ++  ++++++wpG ++e rf+Gt + ++++d      n ++v +Dg+ v++l+++g+++  + ++gl++geh+vrlvkrtE++ ++  f g+v 
  KIR62290.1  79 AGRVVTAG-QTVQYSWPGIYFEGRFRGTGVGLVFDD----AANDYDVAVDGQVVATLVKPGTTT--RWIDGLAAGEHSVRLVKRTESPWSASAFGGLVA 170
                 69**9885.59*************************....*****************9999998..777****************************** PP

                 E.EEEE-S-- CS
       CE2_N 101 deggkllppP 110
                 + gg++l+ P
  KIR62290.1 171 AAGGAILDRP 180
                 *******998 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1
                 E-STT-EEEEEEEEEEEEEEEEE..SSS-EEEEEEETTS CS
       CE2_N  15 fawpGtsvefrftGtslsvrlkdkedkgknrlaviiDgk 53 
                  a++G ++  +++G s  v+        + r  + +Dg+
  KIR62290.1 237 NAYSGIGMVRNYNGGSPGVSYGT----YYDRALLHVDGD 271
                 57999999999999988887777....666666666665 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   6.8   8.5e-18   3.1e-14      44     101 .]       1      58 [.       1      58 [. 0.99

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 8.5e-18
                 EEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTEE- CS
       CBM_2  44 vtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGaaC 101
                 +tq+Wnatv+q+G +vta+n+ wNg +a+Ggs++fG+ gs t+ n+apt f++nG++C
  KIR62290.1   1 MTQAWNATVTQTGAQVTARNAAWNGGLATGGSTTFGVMGSFTAGNPAPTGFALNGTTC 58 
                 69*******************************************************9 PP

>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.6   5.9e+03      36      46 ..      22      34 ..       3      71 .. 0.62
   2 !   43.9   2.3   9.2e-15   3.3e-11       1     122 [.     189     349 ..     189     370 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.6
                   EE...EEHCCH-H CS
  Lipase_GDSL_2 36 vnn..lgvsGatt 46
                    +n  l+ +G tt
     KIR62290.1 22 AWNggLATGGSTT 34
                   3335566666666 PP

  == domain 2  score: 43.9 bits;  conditional E-value: 9.2e-15
                    EEESHHHHTCTTB............CCHCHHCCCCCCCHHHTT-EEEEE.........EEHCCH-H.............HHHHHHHHCTGGG-TSE CS
  Lipase_GDSL_2   1 alGDSiTaGygad............gggrsypaylarllaarlgldvvnn........lgvsGatt...........allrllerlrdllrlkpdl 65 
                    ++GDS+T Gyg +            ++ +++ ++ ++l a++l++d+ +n        + ++G ++            l+   + ++++++ +p+l
     KIR62290.1 189 FIGDSLTVGYGNTsgtrdctgdqvtRTTNTDLSF-GALTARELDADYQVNaysgigmvRNYNGGSPgvsygtyydraLLHVDGDVWDRPATWRPQL 283
                    79**********************9888888888.9999999999999977766555544444433667677776655555556666********* PP

                    EEEE--CCCCCTT--HHHHHHH..........HHHHHHHHCCC....GEEECEEEEE-TTT-TTST CS
  Lipase_GDSL_2  66 vtiliGtNDlgrgvpaaaaaand........nleelidalraa.apgarilvlgplpptpeaaada 122
                    v++ +GtND+ ++ +++++ +++        ++ +++++lra+   g++i+v+g+   ++ a++  
     KIR62290.1 284 VVVDLGTNDFSTPINSGEPWTDAslaaayraTYVAFLEKLRARyGAGTTIVVVGTSLFGDKARQVV 349
                    *********77777777766666777788899***********86777777666665555555444 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   1.5e-11   5.5e-08       1     199 [.     187     390 ..     187     391 .. 0.66

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.5e-11
                  EEEEESHHHHTT......THHHHHHHCCCCEECCCTTC....................GCEEEEEEECTTHHHHHHHCCH..........ECTTTECH CS
                  xxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxx RF
  Lipase_GDSL   1 ivafGDSltdGd......gaatlntiqlktpknlnefdl...................aldrianignkgasdnelqqll..........nkyplkse 63 
                  + ++GDSlt G+       + t++   + t+++l+  +l                           +            +           +y +   
   KIR62290.1 187 VEFIGDSLTVGYgntsgtRDCTGDQVTRTTNTDLSFGALtareldadyqvnaysgigmV------RN------------YnggspgvsygTYYDRALL 266
                  569*******9999888866666666666666665444465555555555543333322......22............2333344444433444444 PP

                  HHHHCTTS........EEEEE--CTCC-EECSSCTTTCEE...HHHHHHHHHHHHHHHH.HHHHTTEEEEEEE-SSTCHCTCCCCHCCHHHHHHHHHH CS
                  xxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  64 qlkalhpd........lviislGtNDsnlgkkstdaakke...aeeyiknlreaikelk.eegapkaivvlvsppglgpqeekdakklgekgnefvge 149
                  + ++ + d        lv+++lGtND+ ++  +  + +++   a++y++ +  +++ l+ ++g  ++ +v+v+  +l++          +k++++vg 
   KIR62290.1 267 HVDGDVWDrpatwrpqLVVVDLGTNDF-STPINSGEPWTDaslAAAYRATYVAFLEKLRaRYG-AGTTIVVVG-TSLFG----------DKARQVVGD 351
                  4555555555555556***********.444444444444111689*************6666.666666666.46666..........6******** PP

                  HHHHHHHHHHHCTEEEECHHHHHHHTHCCGCHCHTSSSB-HHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL 150 ynqrlndlaekdgfavvDlydelqglsgieqlkaDglHpsekgyeklael 199
                   n      a+++++ ++ l d   +l   ++    ++H+s +  +++a++
   KIR62290.1 352 RNA-----AGDAKVRYWHLDDAGLDL--LGC----HWHYSVADDRLIADR 390
                  ***.....99**********999999..444....349999888888876 PP

>> Phage_T4_gp36  Phage T4 tail fibre
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   2.7e-05     0.096      48      87 ..      92     133 ..      54     164 .. 0.82
   2 ?    1.4   0.1     0.082     3e+02      41      69 ..     231     259 ..     186     272 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.7e-05
  Phage_T4_gp36  48 sWygigfkssfesrGagvvfdtRsgn..intkGkvgigtrvp 87 
                    sW gi f+  f ++G+g vfd  +++  +  +G+v ++   p
     KIR62290.1  92 SWPGIYFEGRFRGTGVGLVFDDAANDydVAVDGQVVATLVKP 133
                    9*********************99998899999998775544 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.082
  Phage_T4_gp36  41 kanvdiksWygigfkssfesrGagvvfdt 69 
                     a+ +++ + gig++ + ++   gv ++t
     KIR62290.1 231 DADYQVNAYSGIGMVRNYNGGSPGVSYGT 259
                    57899999999999999999988999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2937.13
//
Query:       KIR62291.1  [L=457]
Description: hypothetical protein TK50_30740 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-20   73.4   0.0    3.5e-20   72.6   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    3.4e-16   59.0   0.6    3.4e-16   59.0   0.6    2.7  4  HisKA        His Kinase A (phospho-acceptor) domain
    2.8e-10   40.4   2.1    1.1e-09   38.6   2.1    2.1  1  HAMP         HAMP domain
    3.2e-06   27.1   0.2    1.1e-05   25.4   0.0    2.0  2  HATPase_c_2  Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   7.7e-24   3.5e-20       1     110 [.     344     451 ..     344     453 .. 0.93

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 7.7e-24
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETT CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepg 99 
                 gde  Lrq++ nl+ N   +++ +  ++v ++++ d ++++v+D G+G++ +  ++ f++f+q  ++  +ggg+GlGl+iv  +v  +gG++ +es pg
  KIR62291.1 344 GDEHALRQVLANLLANVRAHTPADAPVTVAVEPDADGVTVRVTDGGPGVDAALAERAFDRFTQ--AEPGRGGGSGLGLAIVAGIVAAHGGRVGIESPPG 440
                 7999****************8899999*****8779***************************..4455579***********9999************ PP

                 TEEEEEEEEES CS
   HATPase_c 100 rGttftftlpl 110
                 +Gt+++f lp 
  KIR62291.1 441 GGTEVWFALPR 451
                 *******9996 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       2.3     1e+04      21      44 ..      29      49 ..      25      56 .. 0.55
   2 ?   -1.0   0.0       0.4   1.8e+03      16      58 ..     175     219 ..     174     226 .. 0.58
   3 !   59.0   0.6   7.5e-20   3.4e-16       2      66 ..     237     301 ..     236     302 .. 0.93
   4 ?   -2.3   0.1       1.1   4.9e+03      11      26 ..     347     362 ..     346     368 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.3
                HHHHHHHHC..T-HSSCHHHHHHH CS
       HisKA 21 lgnaeaLkregklteelkeyleti 44
                 + a +++r   ++++l+ + +++
  KIR62291.1 29 ALQAYLMQR---TDDQLRSAAAVV 49
                445555666...566666665555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHHHC..T-HSSCHH...HHHHHHHHHHHHHHHHHHH CS
       HisKA  16 PLsailgnaeaLkregklteelke...yletiesearrldhlvedl 58 
                 PL  i ++a a+++  +l+ ++      +++ + e++rl+  v+ +
  KIR62291.1 175 PLDRITATATAISDG-DLDRRVPLdgvRVADPRTEVDRLTLAVNGM 219
                 777888888888774.222222224445555566666777777666 PP

  == domain 3  score: 59.0 bits;  conditional E-value: 7.5e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 l++f+a+ +HELrtPL++i+g++++L+ +   + + +e l++ e+ea r+ ++++dl  l+r++a
  KIR62291.1 237 LRDFAADASHELRTPLTSIRGYLQILRHDMVEPGRRAEVLARSEDEAVRMGRILDDLFYLARLDA 301
                 79************************77745569*****************************98 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHH CS
       HisKA  11 HELrtPLsailgnaea 26 
                 H Lr+ L+ +l+n+ a
  KIR62291.1 347 HALRQVLANLLANVRA 362
                 7888888888888876 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   2.1   2.3e-13   1.1e-09       5      53 .]     171     225 ..     167     225 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 2.3e-13
                 TTHHHHHHHHHHHHHHTTTBTSST.....CCT.TSSSHHHHHHHHHHHHHHHHHH CS
        HAMP   5 rilrPLrrLaraarriaaGdldtr.....lpv.sgrDEiGeLarafNaMldrLre 53 
                 r lrPL r++++a +i++Gdld r     + v ++r E+++L  a+N Ml+rL++
  KIR62291.1 171 RGLRPLDRITATATAISDGDLDRRvpldgVRVaDPRTEVDRLTLAVNGMLTRLQA 225
                 579**************************************************95 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         1   4.5e+03      28      44 ..     208     224 ..     205     284 .. 0.57
   2 !   25.4   0.0   2.4e-09   1.1e-05      40     110 ..     353     427 ..     315     447 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1
  HATPase_c_2  28 lldeirlaveEactNav 44 
                  ++d++ lav+ ++t+  
   KIR62291.1 208 EVDRLTLAVNGMLTRLQ 224
                  56777777777777632 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 2.4e-09
  HATPase_c_2  40 ctNavehayleap.egpvevrlesdeealtvevaDsGpgfdpetlpdpteeep....keslkegGrGlalikglvD 110
                  ++N     + + p ++pv+v++e d++ +tv+v+D Gpg d++ +++           + +  +G+Gla+++g+v 
   KIR62291.1 353 LANLLANVRAHTPaDAPVTVAVEPDADGVTVRVTDGGPGVDAALAERAFDR-FtqaePGRGGGSGLGLAIVAGIVA 427
                  5666667778888899***********************887754443322.1233488899999******99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3401.59
//
Query:       KIR62292.1  [L=282]
Description: radical SAM protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00037   20.9   0.6      0.073   13.4   0.6    2.3  1  Radical_SAM  Radical SAM superfamily
  ------ inclusion threshold ------
      0.039   13.8   0.7        1.7    8.6   0.1    2.4  2  Mago-bind    Mago binding


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.6   8.2e-06     0.073       6     158 ..      11     149 ..       8     157 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.2e-06
                  EESS--TTTSCCTTHHHHHHHHHHHHHHHHHHH.HHHHHHTTSEEEEEE.....SSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   6 gCnlrCsfCarpetvrregrgrslsveeileev.kelkaekgvkevilg.....ggepllypdfvellerlaklavpgiritvetngtlpdeeklerl 97 
                   Cn++C++C++ +   r++++ +l  ++ + e      +   +  + l+      ge l ++ + e++  l++l     r+++ tn        ++ l
   KIR62292.1  11 SCNYDCPYCPFAK---RRDPPDVLAADRAALERfTGW-VAA-TTDLRLSvlftpWGEGLTRRWYREAMVGLSHLP-HVDRVVIQTNLAAR----VDWL 98 
                  6***********8...455555555554433321222.111.333333333444777777777777777777775.77788888888773....4444 PP

                  HHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  98 lelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGende 158
                  +e+ + r +l   ++++         + t+e++l+ + +l+e+g++  ++++vglp   de
   KIR62292.1  99 AEADPARAAL-WTTYHPA--------QVTRERFLARCARLTELGVR-FSVGVVGLPEHLDE 149
                  4444333333.4556665........24567888888888888888.88888888855554 PP

>> Mago-bind  Mago binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00019       1.7       8      17 ..     210     219 ..     205     220 .. 0.90
   2 ?    3.4   0.0    0.0082        73      12      20 ..     232     240 ..     231     243 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00019
   Mago-bind   8 SqRpDGtvRK 17 
                 S+R DGtvR+
  KIR62292.1 210 SVRGDGTVRR 219
                 9********7 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0082
   Mago-bind  12 DGtvRKeir 20 
                 DG++R + r
  KIR62292.1 232 DGSWRAALR 240
                 *****7766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1876.28
//
Query:       KIR62293.1  [L=267]
Description: metalloenzyme domain-containing protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-12   47.3   0.0    2.4e-12   46.9   0.0    1.2  1  Sulfatase      Sulfatase
    3.2e-07   30.3   0.1    0.00038   20.2   0.0    2.1  2  Phosphodiest   Type I phosphodiesterase / nucleotide pyrophos
  ------ inclusion threshold ------
       0.01   15.2   0.0      0.016   14.6   0.0    1.2  1  Metalloenzyme  Metalloenzyme superfamily
      0.014   13.8   0.0      0.019   13.4   0.0    1.1  1  CBP_BcsG       Cellulose biosynthesis protein BcsG


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   5.5e-16   2.4e-12       3     264 ..      10     248 ..       8     257 .. 0.77

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 5.5e-16
                 EEEEEESSE-TT...GSGGGTTTSCSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTT...........HHCTTTS-HHHH CS
   Sulfatase   3 vvliladdlgag...dlglyggktattpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgg...........gglpqteatLpe 87 
                 v l+++d+l+++   dl + g     tp+l+r+   g r  + +s a+ +  +  a++ g+ p+ +  + +++ +                 + a Lp+
  KIR62293.1  10 VCLVTLDTLRFDvadDLAAAGR----TPALARVLPGG-RWERRHSPASFTYAAHHAFFAGFLPTPAAPGRHERLYAaafpgsetsgeRTWVFDAADLPT 103
                 679999***9998777777777....99998666555.6666668999*********************999999999*99888654333456678*** PP

                 HHHHTT-EEEEEEES-SCCSGGGSHHCCTTTSEEEETSSS...CHHTCCCCCCCCCECTCCCTTTTCSHHHHHHHHHHHHHHCCC.TSSEEEEEEE-TT CS
   Sulfatase  88 llkeaGYntaaigkwhlgwssrqsvyknrgfdrflgfptg...saalkdpekseyngevlrvppeggysddrlldealefllarn.dkpfflylatlap 182
                  l + GY+t ++g+   g+++r +          lg+      ++a+++pe++          +++g++d++l   a+++  + +  +p f +l + a 
  KIR62293.1 104 ALAQEGYHTLCVGGV--GFFNRRG---------ALGSVLPglfAEAHWEPEFGV---------TAPGCLDAQLDRLAETL-PRVPaRQPLFTFLNVAAL 181
                 *************65..6666776.........344333300044444444333.........3579***9985555555.78888************* PP

                 SSSTCTCGGHTCCGSTTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCT CS
   Sulfatase 183 HappeapdeyakkyatffddgseaarqlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggk 264
                 H+p+    + a++               l++ ++++eyvD  +gr++a L  +g  ++++ ++ SDhg + +e+++  +   
  KIR62293.1 182 HQPNRHYLPGADA-------------DDLASHAAALEYVDSRVGRLFALL--TGRGRPVFTIVCSDHGTAYGEDGHTGHRIG 248
                 *977333333344.............89**********************..*****************9999666666544 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0003       1.4       1      55 [.      10      64 ..      10      68 .. 0.91
   2 !   20.2   0.0   8.4e-08   0.00038     170     237 ..     163     238 ..      87     251 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0003
                  EEEEEETT-BTTHHHHHG.S.TSHHHHHHHHHSEEESEEE-SSS-SHHHHHHHHHHS CS
  Phosphodiest  1 vlvislDGlradlldrla.e.llpnlaaLakegvsapnlrpvfPtlTfpnhaslvTG 55
                  v++++lD lr+d  d+la   ++p la+ +  g + +  r +  ++T+++h ++  G
    KIR62293.1 10 VCLVTLDTLRFDVADDLAaAgRTPALARVLPGGRWER--RHSPASFTYAAHHAFFAG 64
                  789**************9868*************999..88999*******999888 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 8.4e-08
                   T.....SSESEEEEEECCCHHHHHHH-TT.SHH....HHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EEE CS
  Phosphodiest 170 l.....ekpdlllvyleetDtvgHkfGpd.spe....vedalrrvDkaigdLlealderglsaetniilvSDHGmadv 237
                   l     ++p ++++++ ++ +   ++ p  + +    +++al++vD+ +g+L+++l  rg   +t  i+ SDHG a  
    KIR62293.1 163 LprvpaRQPLFTFLNVAALHQPNRHYLPGaDADdlasHAAALEYVDSRVGRLFALLTGRGRPVFT--IVCSDHGTAYG 238
                   34466677888888888888888888775344467789*********************999999..*******9865 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.5e-06     0.016     148     190 ..     194     238 ..     178     259 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.5e-06
                    TT-HHHHHHHHHHHHHHHHHHHTTS-TTT..EEEEEE-SSB--TT CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
  Metalloenzyme 148 tgdleatiaaieaaDeavkeildaieqvd..gilvvtADHgnaed 190
                    + dl+  +aa+e++D++v++++  +   +     +v++DHg+a  
     KIR62293.1 194 ADDLASHAAALEYVDSRVGRLFALLTGRGrpVFTIVCSDHGTAYG 238
                    5789999****************999887225789*******965 PP

>> CBP_BcsG  Cellulose biosynthesis protein BcsG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.3e-06     0.019     345     414 ..     170     240 ..     156     246 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.3e-06
    CBP_BcsG 345 krvalfyntisLhDGnrlag.skklsslasYkprakkllddldkfideleksgrkvvvvlvPehGaalrgd 414
                 ++ ++f+n+ +Lh  nr     +  ++las+++ ++   + +++++  l  +gr v  ++  +hG a  +d
  KIR62293.1 170 QPLFTFLNVAALHQPNRHYLpGADADDLASHAAALEYVDSRVGRLFALLTGRGRPVFTIVCSDHGTAYGED 240
                 5789************964313345588**************************************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1820.07
//
Query:       KIR62294.1  [L=312]
Description: hypothetical protein TK50_30800 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-22   79.7   0.1    3.1e-22   79.3   0.1    1.2  1  Cyclase   Putative cyclase


Domain annotation for each model (and alignments):
>> Cyclase  Putative cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.1   1.7e-26   3.1e-22      11     132 ..      81     241 ..      31     243 .. 0.77

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 1.7e-26
     Cyclase  11 tpvwpdp..................islsehtGTHlDapgHfae.kti...................delpleelvgpavvldvsak......aaaedy 65 
                 +     p                  i++  +t TH+D+p+H++   t+                    + +++ +++++v+ldv+++      a  +++
  KIR62294.1  81 M-----PvpgfhadrrwgfsserigITFHGNTLTHVDSPCHVFWdGTMyngrshslvdpatgsawaaVTAAANGIITRGVLLDVARArgvpwlA--PGQ 172
                 3.....1333334556777788888999999**********85442224455555555555555555446779***********7776765432..566 PP

     Cyclase  66 eiitaedleaalakqgveikpgdivlirTgwskrl...edkekyrnpglseeaaewlaekgvkavGvDtl 132
                  +  ++dle+a+++qgv++++gd+vl+rTg+++ +    ++  +++ g++++++ wl+e+gv+++++Dt+
  KIR62294.1 173 GV-FPDDLEEAERRQGVRVRSGDAVLLRTGYGRARheaGESIGFTQAGWHASCLPWLHERGVALIAADTP 241
                 45.9****************************99876433355588***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2220.74
//
Query:       KIR62295.1  [L=136]
Description: hypothetical protein TK50_30825 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-11   43.5   7.3      2e-11   43.5   7.3    1.9  2  DUF1232   Protein of unknown function (DUF1232)


Domain annotation for each model (and alignments):
>> DUF1232  Protein of unknown function (DUF1232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   1.2      0.54   9.7e+03       3      11 ..       6      14 ..       5      17 .. 0.64
   2 !   43.5   7.3   1.1e-15     2e-11       1      37 []      61      97 ..      61      97 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.54
     DUF1232  3 lliagalaY 11
                +++aga+a 
  KIR62295.1  6 VALAGAVAL 14
                567777765 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 1.1e-15
     DUF1232  1 aklliagalaYlisPiDlIPDfiPvlGflDDlavltl 37
                akl+i++a + + sP+DlIP+f+Pv+G lDD++v++l
  KIR62295.1 61 AKLAILLAGLWVASPVDLIPEFLPVIGPLDDIVVVAL 97
                69*********************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 964.48
//
Query:       KIR62296.1  [L=127]
Description: hypothetical protein TK50_30830 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.41   10.6   6.2        1.4    8.9   6.2    1.9  1  Inhibitor_I36  Peptidase inhibitor family I36


Domain annotation for each model (and alignments):
>> Inhibitor_I36  Peptidase inhibitor family I36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   6.2   7.7e-05       1.4       5      55 ..      34      85 ..      30     101 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 7.7e-05
  Inhibitor_I36  5 asdCpagyfClysdangt.GtraelsgssaavganmndnarSvwNrtgsrvt 55
                   + +C +g fC++ ++ +   +++e+ + ++a  ++    a+ ++N t+++v 
     KIR62296.1 34 PGNCAQGTFCVWPNWAYPnPAPVETPSLVSAGEWSGSAPAKTYYNYTPRNVD 85
                   679************9964444554444444444444444677777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 855.34
//
Query:       KIR62297.1  [L=162]
Description: hypothetical protein TK50_30835 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.03   14.3   7.7       0.14   12.1   7.4    2.0  1  ECF-ribofla_trS  ECF-type riboflavin transporter, S component
        3.5    8.1   7.0        1.5    9.2   0.5    2.9  3  Romo1            Reactive mitochondrial oxygen species modula


Domain annotation for each model (and alignments):
>> ECF-ribofla_trS  ECF-type riboflavin transporter, S component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   7.4   1.6e-05      0.14      35      77 ..      67     109 ..      21     114 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.6e-05
                      --TTHHHHHHHHHHSS--STHHHHHHHHHHHHHHHSS-GGGHH CS
  ECF-ribofla_trS  35 sinlgdavlalaallfGpvvGflvGaiGsalaDllsgYgiwap 77 
                       ++lg av ++a+++ Gpv+G++vG+   ++  l s +g+w++
       KIR62297.1  67 LLQLGCAVSVFASFISGPVYGVVVGLATGLMWALTSAWGQWLV 109
                      689*********************************9****86 PP

>> Romo1  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.6     0.071   6.3e+02      12      31 ..      14      33 ..       1      42 [. 0.62
   2 ?    9.2   0.5   0.00017       1.5       1      28 [.      75     102 ..      75     106 .. 0.87
   3 ?   -0.9   0.0      0.24   2.2e+03      30      45 ..     128     143 ..     124     146 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.071
       Romo1 12 mGaaVGlaiGllfGtfsalr 31
                +G  +G ++ + fG++ +l+
  KIR62297.1 14 IGPPIGSSFVIAFGLALGLS 33
                55555555555555544443 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00017
       Romo1   1 scldkikmGalmGaaVGlaiGllfGtfs 28 
                 s++ ++  G + G++VGla+Gl++ ++s
  KIR62297.1  75 SVFASFISGPVYGVVVGLATGLMWALTS 102
                 57899999**************998776 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.24
       Romo1  30 lryglrgrgllrtlgk 45 
                 + + +r+rg+lr++g 
  KIR62297.1 128 FLSDARDRGVLRQVGA 143
                 5556799999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1165.21
//
Query:       KIR62298.1  [L=570]
Description: aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-37  128.5   0.0    2.6e-36  125.4   0.0    1.9  1  Aminotran_5  Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0   1.5e-40   2.6e-36       2     348 ..      36     411 ..      35     422 .. 0.87

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 1.5e-40
                  EEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEE.SSHHHHHHHHHHHCCCC.............. CS
  Aminotran_5   2 yldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiift.sGtteainlvalslars.............. 84 
                  y d++A+ +  + V da+++     +an+h + +  g  + +  e+ar  v + ++ ++e+ ++f+ sG+t a+   +  l+ +              
   KIR62298.1  36 YADYTASGRALDFVEDAVRDWVLPRYANTHTESSATGLATGRLREDARRIVHDAVGGTDEHVVVFCgSGATAAVDKLIGMLELRlphgpthrhglldr 133
                  7889999999999999*************************************************978888899877765543311111111222223 PP

                  -TTTSE..EEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH-....-TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE- CS
  Aminotran_5  85 lkpgde..ivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekll....nektklvaithvsnvtGtiqpveeigklakkkgalvlvDa 176
                  + pg++  + v+  ehh+n +pw+e      a+v+vi +d+eg++d  el+++l    +   ++ +++++snvtG++ ++++i++l++++gal + D 
   KIR62298.1 134 VPPGQRpvVFVGPYEHHSNELPWRETY----AEVVVIGADAEGHIDRAELAAQLaryaDRPLRIGSFSAASNVTGILSDTDAIAALLHAHGALSCWDY 227
                  4455543377899***********998....99*************99999999666567789*********************************** PP

                  TTTTTTS---HHHH......TESEEEEETTT.TTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEET.TEEEEHCTTGGGS.SS--HHHHHHHHHHHH CS
  Aminotran_5 177 aqavghipidvkkl......gvDflafsghK.llgPtGiGvlyvrkellekleplllggemveevsl.eettfaeapskfeaGTpnvagiiglgaale 266
                  a+a +  pi + +       g D +++s hK + gP+  Gvl+vr++l  +  p+ +gg++v+ v+   ++ ++++  + e+GTp +++ i  g+++ 
   KIR62298.1 228 AAAGPYVPIRMGESapgaadGKDAVFLSPHKfVGGPQTPGVLVVRRDLARNRVPTTPGGGTVAFVDPvGHRYLDDPVAREEGGTPAIVESIRAGLVFA 325
                  **********976544444489*********7778********************************88888899999999***************** PP

                  HHHCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSH....HHHHHHHHHT.TEEEEEE-TTTHHHHHH CS
  Aminotran_5 267 yleeigleaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnfkgvha....edvatlLdee.gIavrsGhhcaqplmkr 348
                  + +++g e i+++e++l +++l r ++ pg++++g  +  rr  ivs++++  +     + v+ lL++  gI  r+G +ca p+ +r
   KIR62298.1 326 LKQAVGTEVIRAREERLWARALRRWSANPGIEVLG-GTRARRLPIVSVQIRHGDRhlhhNFVVALLNDLfGIQARGGCSCAGPYGHR 411
                  ***********************************.6889999*******7665522216688899999************998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 4100.31
//
Query:       KIR62299.1  [L=204]
Description: hypothetical protein TK50_30945 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-08   33.5   5.8    8.3e-07   29.8   3.5    2.6  2  MDMPI_N   Mycothiol maleylpyruvate isomerase N-terminal domai
    0.00058   20.7   4.4    0.00058   20.7   4.4    2.3  2  MDMPI_C   MDMPI C-terminal domain
  ------ inclusion threshold ------
      0.011   16.3   0.0      0.019   15.5   0.0    1.4  1  DinB_2    DinB superfamily


Domain annotation for each model (and alignments):
>> MDMPI_N  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   3.5   1.4e-10   8.3e-07      12      63 ..       2      52 ..       1      66 [. 0.80
   2 !    4.8   0.1    0.0071        43      92     141 .]      51      94 ..      48      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.4e-10
     MDMPI_N 12 vagLtdeqwaapsp.cpGWtvadlvaHlarsaralaaalaaegaesalardaa 63
                +a+ ++ + a p++ cpGWtv++lvaHl+    ++ + +++  + +++a d++
  KIR62299.1  2 LAEAPPGAAALPVAhCPGWTVRELVAHLVEVCARVHGRVTG--DVPGPAPDGG 52
                6888999********************99999988888877..5555555544 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0071
     MDMPI_N  92 aavtrlaaalaalppdaiadrlgipggprslgeflrtrlvEavvHglDla 141
                 ++v++l+a++++l    ++  +  ++g ++     ++ +++a+ H+lDl+
  KIR62299.1  51 GGVPELLAEWERL--SGPVEGFLAGPGSMD----GHILVMDAFTHELDLR 94 
                 6788999999986..677777766777777....999***********96 PP

>> MDMPI_C  MDMPI C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.5     0.071   4.3e+02      31      67 ..      31      71 ..       5      73 .. 0.59
   2 !   20.7   4.4   9.7e-08   0.00058      25      89 ..     120     183 ..      98     185 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.071
     MDMPI_C 31 egprtvhlhatdggrarlalwadg.......adatvrGtaadll 67
                e  ++vh ++t++    +++++dg          +++G+ + +l
  KIR62299.1 31 EVCARVHGRVTGDV---PGPAPDGgvpellaEWERLSGPVEGFL 71
                44456666666666...344445444444433356777766665 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 9.7e-08
     MDMPI_C  25 rvvlelegprtvhlhatdggrarlalwadg.adatvrGtaadlllllwGRlspddt..levdGdrall 89 
                  + l+ +g +++++++ +g+    a +++g +++tv G++ +++l l+GR+s++    l ++ d++++
  KIR62299.1 120 SASLDGHGLPPLAVRTEHGD----AVAGTGePTVTVAGPWHEVYLSLAGRRSAAQIrsLRWSADPGRW 183
                 46688899999999999888....4555566**********************875788888887776 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   3.1e-06     0.019      28     114 ..      18      97 ..       2     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.1e-06
      DinB_2  28 gkwsiawllaHlgnveelllerlrgeeaprpgldpltppsaaealaylaevrarllallealtdadldrpltaphpglgkltlgdvl 114
                 ++w++++l+aHl+ v+  +  r+ g+  p     p++++++ e+la+++++ + +  +l++  +  +d ++   + ++ +l+l+++l
  KIR62299.1  18 PGWTVRELVAHLVEVCARVHGRVTGDV-P----GPAPDGGVPELLAEWERLSGPVEGFLAG--PGSMDGHILVMDAFTHELDLRQAL 97 
                 57**********************933.3....367799************9999999998..556666666666667777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1581.89
//
Query:       KIR62300.1  [L=455]
Description: cytochrome P450 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-86  289.2   0.0    6.6e-86  288.9   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.9   0.0   3.7e-90   6.6e-86       1     446 [.      12     437 ..      10     448 .. 0.91

  Alignments for each domain:
  == domain 1  score: 288.9 bits;  conditional E-value: 3.7e-90
                 --SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHH CS
        p450   1 PpgptplplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklR 99 
                 Ppgp   p+   +l  ++ +++ +v+r ++ ++g+ +rl lg+k+  + ++p+++k+vl  +     ++  +     ++++++g g+l+++ge w+k+R
  KIR62300.1  12 PPGP--SPWTAPVLLGRMARNRLDVMRAVAARHGDAVRLPLGPKTLWFFNHPDHAKHVLAENP---GNY-HKGIGLVHARRTLGDGLLTSEGELWTKQR 104
                 5555..5555555555556899999***********************************995...444.44444444568****************** PP

                 HHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHH CS
        p450 100 rfltptltsfgklsleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpll 198
                 +++ p ++   + +  + v ee+ ++ ++l++ +g+   +di + +++ +l v+g++l+ a ++      +  + +a+e++ +   ++++ l  ++p+ 
  KIR62300.1 105 KVIQPVFQARRIARQADAVAEESVRMAARLQRAVGAG-PVDIRHEMTELTLGVLGRTLLDADLG-E----FGGIGAAFEAVQDQAIFEMMSLGAVPPW- 196
                 **********6668999********************.7**********************999.4....5556677777777777889999999995. PP

                 TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHH CS
        p450 199 kylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqe 297
                   +p + +r++++a+ +l++++d+l+  rr++       r d ++ l+++++ + ++  + ++ ++ ++ +ll+aG++Tt+stl+w++y+L ++ ev e
  KIR62300.1 197 --VPLPRQRRFRRARAELQEIVDRLVAHRRAQPGGI-AGRDDVVSRLIESTSRETDP-RVARQRMRDELVTLLLAGHETTASTLTWTFYLLDRHHEVWE 291
                 ..5999*************************99988.6899*********8666666.9**************************************** PP

                 HHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTE CS
        p450 298 klreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnsk 396
                 +++ E  evlgd r+pty+dl +l y+ +v++E++Rl+p+v  llpR +  d v++g ++p+G +v++++y+lhr pe++p+P++Fdp+RF++++   +
  KIR62300.1 292 RMHAEAVEVLGD-RNPTYEDLHRLRYTAMVVEEVMRLYPPVW-LLPRIAQGDDVVGGWHVPAGADVVLCPYTLHRHPEFWPDPDRFDPDRFDPDRR-AD 387
                 ************.68***************************.****************************************************9.67 PP

                 SSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEE CS
        p450 397 rksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppi 446
                 r+ +a++PFGaGpR C+G +l+ me   +la++ ++ +++lqp+  + p 
  KIR62300.1 388 RPRYAYIPFGAGPRFCVGNNLGLMEAVFVLACVTRQLRLSLQPGYPVVPE 437
                 *****************************************998776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2846.93
//
Query:       KIR62301.1  [L=170]
Description: flavin reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-37  128.5   0.0    2.4e-37  128.3   0.0    1.0  1  Flavin_Reduct  Flavin reductase like domain


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.3   0.0   1.4e-41   2.4e-37       1     154 [.      19     167 ..      19     168 .. 0.96

  Alignments for each domain:
  == domain 1  score: 128.3 bits;  conditional E-value: 1.4e-41
                    HTTS-EE-EEEEE.EETTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBCCGHHHHHHTCS...SCCCCCCCCCCCEEECT CS
  Flavin_Reduct   1 mrrvaqpvavvttsvpptsplgatlssftslsldPplvafslrlpsstadalkeagefvinllsesqealadafsqksgprtddksifagltwees 96 
                    m+ +a++v+vvt+   ++ p+g+t+++fts+sldP++v+++++++s ++d + ++g+f++++l++ qe la+ f++ s+pr++ ++++++++ +++
     KIR62301.1  19 MGMFATGVTVVTS--GRDLPHGMTANAFTSVSLDPAMVLVCVKRSSVMHDTVLAQGSFAVSILAAGQEGLARYFASSSRPRDEREFETVPCEAGPH 112
                    888*********9..8999******************************************************************99999999996 PP

                    CCCSEEETTCSEEEEEEEEEEECCTTEEEEEEEEEEEEESTTECTTBEECCCCCEEEE CS
  Flavin_Reduct  97 ptgapallgalasleCqvvgsvelgdhelfigeVvavkvgddadeepLlywrrryagl 154
                     tgap++ g +a++eC++   ++ gdh +f+g V+    gd+ d   Ll++ +r++++
     KIR62301.1 113 -TGAPIVSGNVAWVECKLAAVYDGGDHSIFLGSVLGTGRGDSSD--ALLFHGGRFCEV 167
                    .************************************9999966..7*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       191  (0.0106531); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 1118.86
//
Query:       KIR62302.1  [L=1931]
Description: erythronolide synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-53  180.0   0.7    1.7e-52  178.5   0.0    2.3  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    2.2e-43  148.6   2.6    6.1e-43  147.2   2.6    1.7  1  PS-DH            Polyketide synthase dehydratase
    3.5e-30  104.5   1.5    9.8e-30  103.0   1.5    1.8  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
      1e-28  100.5   0.0    4.7e-28   98.3   0.0    2.2  1  KR               KR domain
    6.4e-22   78.5   0.3    1.6e-21   77.2   0.3    1.6  1  Acyl_transf_1    Acyl transferase domain
    7.4e-13   48.4   0.0    1.8e-12   47.1   0.0    1.6  1  adh_short        short chain dehydrogenase
    5.1e-09   36.6   0.0    9.4e-09   35.7   0.0    1.5  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    7.1e-07   29.0   1.7    1.6e-06   27.8   0.0    2.4  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    0.00011   22.4   0.2      0.015   15.7   0.1    2.8  2  PP-binding       Phosphopantetheine attachment site
     0.0013   18.2   0.2     0.0029   17.0   0.2    1.5  1  Thiolase_N       Thiolase, N-terminal domain
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.46   10.1   0.0    1.8  2  FabA             FabA-like domain


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.5   0.0   1.1e-55   1.7e-52       9     253 .]       1     280 [.       1     280 [. 0.88
   2 ?   -3.5   0.2       3.8   6.2e+03      97     136 ..     317     359 ..     315     386 .. 0.58

  Alignments for each domain:
  == domain 1  score: 178.5 bits;  conditional E-value: 1.1e-55
                    EEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..STTEGGTTSTHHHHHHHCTS-HHHHHHHHHHHHHHHHHT CS
  ketoacyl-synt   9 mgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfldvddfdpeffgispreaeamdpqqrllleaawealedag 104
                    m++r+P+++d+ ++we++l+gr a+++lp++r++a+++y p++ a+++ ++ ++++++ ++fd   ++i  +  +++d  + l+l+++++al+dag
     KIR62302.1   1 MACRYPDAEDPNQLWENVLTGRRAFRRLPDERMNAEDYYSPDPAAPDRFYSAKAAVIEGFEFDRVKYKIAGSTFRSTDMTHWLALDTVARALADAG 96 
                    9*********************************************************************************************** PP

                    S-HHTC.TTGGEEEEEEESSTHH.................................HHHHHHHHHTT........GGGSCTTHHHH.....HSTTH CS
  ketoacyl-synt 105 ltpeel.dgsrvgvfiGvgagdy.................................aalaaldedgs........evkaspkavga.....vlanv 153
                    + + e      +gv+iG +   +                                 a l++l    +        + +              lan+
     KIR62302.1  97 FADGEGlPLATTGVVIGNTLTGEfsranllrlrwpyvrrtvgaalreqgwddaavgAFLDEL----EprykapfpPID-------EdtlagGLANT 181
                    *8866525555*********9666778899999999**999987777777776443222222....123223444333.......24455559*** PP

                    HHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEE CS
  ketoacyl-synt 154 iagrisyalglrGpsvtvdtACsSslvavhaavqslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkr 249
                    iagr+ ++++++G  +tvd ACsSsl  v+ a+++l +g+ d+a+aGGv+l++ p +v+gf+++g+l++ g  + +d + +Gf++GEG+G++vL+r
     KIR62302.1 182 IAGRVCNHFDFKGGGYTVDGACSSSLLSVATACNALARGDLDAAVAGGVDLSIDPFEVIGFAKTGALAT-GEMRVYDRNSNGFWPGEGCGMLVLMR 276
                    *******************************************************************99.7************************* PP

                    CHHH CS
  ketoacyl-synt 250 leda 253
                     eda
     KIR62302.1 277 DEDA 280
                    *998 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.8
                    HHHHHHHTS-HHTC...TTGGEEEEEEESSTHHHHHHHHHHHT CS
  ketoacyl-synt  97 wealedagltpeel...dgsrvgvfiGvgagdyaalaaldedg 136
                    ++a e+ag+  +++   +g  +g  +G + + +a ++a +e++
     KIR62302.1 317 RRAYERAGFGIDSVsylEGHGTGTAVGDATELTAFTEARQEAD 359
                    6788999999999866666668888888877553333333222 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.2   2.6   3.7e-46   6.1e-43      12     294 ..    1461    1728 ..    1450    1731 .. 0.84

  Alignments for each domain:
  == domain 1  score: 147.2 bits;  conditional E-value: 3.7e-46
                  -SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E....EEEEEEE CS
       PS-DH   12 sdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgadrawvefeifSr 108 
                  ++ e+v++++l+++++ +L+DH +dg+ ++P++ ++e++++Aa  ltg ++a +l+dv++l+++v+p++++ ++++++ +++dg++    e+ ++S 
  KIR62302.1 1461 PGVELVVDADLTADDDLYLADHLLDGDLLFPAVLGMEAMAQAASALTGRTEAPVLEDVELLRPIVVPPTGSNTIRIAVLAAADGTV----EAVVRSS 1553
                  6899*****************************************************************************99999....******* PP

                  -SS-TT.EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EE.EEEEETTEEEEEE---..GGGSSTTTT. CS
       PS-DH  109 egggeewtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglr.alwrgdgealaelrlp..eelaggesa. 201 
                  +++ +  ++h+++++r ++  +     +ea+  ++a+   l   +++++Y  +    l++G +Fq+l   l+  ++++ a+++    ++     ++ 
  KIR62302.1 1554 DTNFA--ADHFRARLRWDRPLR-----VEARAGTAAAG-LLPIDPARDLYGPV----LFQGRRFQRLLgYLDLAATSCTARVSNRpvDA-----WFa 1633
                  ****7..9********876555.....44443333222.233346889*****....*********87245553455555554444533.....333 PP

                  ......-SB.-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S....-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEESEEEEE CS
       PS-DH  202 ......yvl.hPallDaalQllaaalsaeaekadaaylPvaierlrvyr.pssaageelwvharleeegarsivadltlvdedGrvvaeieglrlrr 290 
                        +vl +P++ D+++++l      + +  da+ lP aierl++   + +a  +++++ha  + ++++++++d++++d+dG++v +++glrl++
  KIR62302.1 1634 ryrpgdLVLgDPGTRDTVMHAL------QCCVPDATLLPGAIERLHLADpKVAATLDTVTIHAVERLRQGDTYHYDVDVCDADGNLVERWQGLRLHA 1724
                  4455889999**********87......24788***************9866677899*************************************** PP

                  --XX CS
       PS-DH  291 vere 294 
                  v+++
  KIR62302.1 1725 VRKQ 1728
                  9987 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   1.5     6e-33   9.8e-30       1     114 [.     288     401 ..     288     404 .. 0.97

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 6e-33
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-GGG CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHleaA 93 
                      +avi+g++ +sdg+  ++t+p++++++ ai++a+++ag+  ++v+y+e hgtgt++gD++El+a +++ +e     +p a+++vK n GH++aA
       KIR62302.1 288 HAVIAGWGYSSDGK-GGITRPEASGHRLAIRRAYERAGFGIDSVSYLEGHGTGTAVGDATELTAFTEARQEADAaAAPAAISTVKGNFGHTKAA 380
                      69*********885.8******************************************************9998999***************** PP

                      HHHHHHHHHHHHHHHTEE--B CS
  Ketoacyl-synt_C  94 aGvaelikvvlalkhgvippt 114
                      aGva+l+k++la++++vipp 
       KIR62302.1 381 AGVAGLLKAILAVRQQVIPPA 401
                      *******************96 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.0   2.9e-31   4.7e-28       3     179 ..    1205    1384 ..    1204    1385 .. 0.93

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 2.9e-31
                  EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS...--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TT CS
          KR    3 ylitGGlGgLGlelarwlaekgarhlvllsRsa.aadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklle 98  
                   l+tGG  g+  e a  l ++  + + l++Rs  a+d++ +a++++l+a g++ ++++aD++  d+v+a++++i++  +p++Gv+h Ag  + ++++
  KIR62302.1 1205 LLVTGGGKGITAECALALGRDTLAAVGLIGRSDpATDAELAANLDRLTAAGVRFHYARADITALDEVKAAVNDIERVLGPVTGVLHGAGRNEPTAVA 1301
                  59******************************63555666789****************************************************** PP

                  T--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHH..HHTEEEEEE--BT CS
          KR   99 emtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsq..glpavsinwglwa 179 
                  +++++++++ lapK++G++ +  ++ +++l ++v+f Si g  g +g+++Ya+aN ++  l +   +   + + ++++w++w+
  KIR62302.1 1302 NLDEATFRRTLAPKIDGLEAVLAATDPHTLRLLVTFGSIIGRAGLRGEGHYATANDWMTDLTRKVGEDypHIRCLALEWSVWS 1384
                  *************************************************************9987765224559999999996 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.3   9.8e-25   1.6e-21      52     261 ..     608     818 ..     528     834 .. 0.88

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 9.8e-25
                    -TTGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHT.S-EECCEECS.HHHHHHH...T CS
  Acyl_transf_1  52 peglldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGElAaavvagalsseeallavvlrsrlmmqla.gpgdmaavelaeeeeklr.cqd 145
                    p   l a+ ++qp ++   +a    l+  G r  +  GHSlGEl a++ aga+ +   +  +  r+r+m+ ++ g+g ma+++ a+e  +      
     KIR62302.1 608 PGADLVATAVAQPRIVTGSVAGLRALSMLGIRATGATGHSLGELTALHWAGAMDEQTLIATAGARGRIMADASaGDGTMASISAAPEVVEPLlAGT 703
                    447899*********************************************98887777888899******999**********444333333666 PP

                    T.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHH CS
  Acyl_transf_1 146 dvvgavansprrvvisgsqealrelvervskegvgalvenvnvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanl 241
                     vv a +nsp+++v+sg+ +a+ ++ +  +++g+++ +++v+ a+hs++v+++a a a++l   +  +   +  s+++ d   + + + e  ++ +
     KIR62302.1 704 PVVIAGYNSPQQTVVSGPVDAVLQVGAAAERAGLFWTRIAVSHAFHSEAVAPAAVAFAEHLSGGTFAPLARPMVSTVTGDVLPADTDVPELLRRQV 799
                    7999*********************************************************9988777888888999999889999999999**** PP

                    HCHCCHCCHHTTSSSECC-C CS
  Acyl_transf_1 242 rspvrfaeavlsaaetiplv 261
                      pvrf +av+++a++  + 
     KIR62302.1 800 LDPVRFTQAVRRLADD-ADL 818
                    **********999554.444 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   1.1e-15   1.8e-12       2     167 ..    1204    1370 ..    1203    1378 .. 0.87

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 1.1e-15
                  EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCH....HHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    2 vvlvtGassGIGraiakelakeGakvvv.vdrse....ekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                  v lvtG+++GI  ++a +l ++    v  ++rs+    ++l++ ++ l ++g +++++++D+t  +ev+a+v++++  lg++  + ++AG ++++++
  KIR62302.1 1204 VLLVTGGGKGITAECALALGRDTLAAVGlIGRSDpatdAELAANLDRLTAAGVRFHYARADITALDEVKAAVNDIERVLGPVTGVLHGAGRNEPTAV 1300
                  689******************997776658887521114455555556666********************************************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakel 167 
                  ++l+e++++r+++  + g+  + +a  p+ l       v+ +S++g+ ++ g   Y+++   ++ ltr++ +++
  KIR62302.1 1301 ANLDEATFRRTLAPKIDGLEAVLAATDPHTL----RLLVTFGSIIGRAGLRGEGHYATANDWMTDLTRKVGEDY 1370
                  *************999999888888888844....5899********************999999999988877 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   5.8e-12   9.4e-09       8     108 ..     413     525 ..     408     529 .. 0.77

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 5.8e-12
  KAsynt_C_assoc   8 leegrlkVvteptpwpggi...vgvNsfGfGGsnvHviLksnkkekrkeesk.......eeslprLlvlsgrteeaveallekleeh..lldael 90 
                      ee  l+V+ ++  wp +    ++v+s+GfGG n+Hv+++s+++ +r++          +++  +Ll++ +rt+e + + l++l+ +  +l+ ++
      KIR62302.1 413 VEEPALRVPATAELWPADKpirAAVSSMGFGGINAHVVVESAESGRRTRIGAsttalvrSRQDTELLMFDARTPEELGSRLSDLAPWvgRLSYAE 507
                     567789***********9999**********************6666665555678888899******************999999844344444 PP

  KAsynt_C_assoc  91 lsllneilseeisrlpyR 108
                     l  l+ +l+ + ++ p+R
      KIR62302.1 508 LGDLAVALAGKLAGRPVR 525
                     444555555555555555 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.8       2.2   3.6e+03      11      64 ..    1100    1161 ..    1098    1170 .. 0.46
   2 !   27.8   0.0     1e-09   1.6e-06       4     161 ..    1212    1372 ..    1209    1382 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.2
                    HHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSEE......EE--TTSHHHHHHHHHHHH CS
  adh_short_C2   11 AkalaeeGaevvltdlneea..kkrveelaeelgaev......lecDVtdeeqvealveevv 64  
                    A+++ ++G  v ++ +++++  +  +++l++e+++ v        +D   ee+++a+v++vv
    KIR62302.1 1100 ARSALAQGGAVRFVAVGDRRtaAGLAKTLHQEHPEIVttvvvlPLVDEPAEEALAATVARVV 1161
                    66666666666666666666433444444444442222222212234444444444444444 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 1e-09
                    TSHHHHHHHHHHHTT.-EEEEEESSGGH.HHHHHHHHHHTTSE.E....EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH- CS
  adh_short_C2    4 sgIGraiAkalaeeG.aevvltdlneea.kkrveelaeelgae.v....lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpflets 91  
                    +gI +++A al +   a v l  +++ a ++++++  ++l a+ v     ++D+t  ++v+a+v+++++ +g + ++++ ag  ++  + +++++
    KIR62302.1 1212 KGITAECALALGRDTlAAVGLIGRSDPAtDAELAANLDRLTAAgVrfhyARADITALDEVKAAVNDIERVLGPVTGVLHGAGRNEP--TAVANLD 1304
                    57777777777655425677777777776555555555555444444679************************************..******* PP

                    HHHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGG CS
  adh_short_C2   92 reefdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgp 161 
                    ++ f+r+l+ ++ +l +++ a  p+  +   +v+  s+ ++ ++ +  +y++a   +  ltr +  ++ +
    KIR62302.1 1305 EATFRRTLAPKIDGLEAVLAATDPHTLR--LLVTFGSIIGRAGLRGEGHYATANDWMTDLTRKVGEDYPH 1372
                    **********************996554..6888888888888999999999998888888888887755 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.044        72      16      55 ..     833     874 ..     826     877 .. 0.80
   2 !   15.7   0.1   9.1e-06     0.015       2      65 ..     938    1003 ..     937    1005 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.044
  PP-binding  16 eeidpdtdlfdlGlDSllavellaaleeef..gveiplsdlf 55 
                  +i+p+ +  +l  DSl+++ ll+a+ +++  g +++ + lf
  KIR62302.1 833 ADIAPQVPTVSLETDSLSLAGLLNAVGAAYaaGAAVNHEALF 874
                 56899999999***************9999555566666665 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 9.1e-06
  PP-binding    2 klrelvaevlgvpleeid.pdtdlfdlGlDSllavellaaleeefgveiplsdl.fehptlaelaa 65  
                   lr+l+ae  ++ple++  ++ +l++l l S+++ +++++  +e++v+ p  +  ++  t+ae+a+
  KIR62302.1  938 LLRRLAAERAELPLEAVRpDSRPLDELHLSSITVGQIVNQAARELNVAAPTLTSsYATATVAEIAQ 1003
                  699**************747777************************7666654488999999987 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   1.8e-06    0.0029      79     113 ..     197     231 ..     178     235 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.8e-06
                 EEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEE CS
  Thiolase_N  79 vtvnkvcsSglkavalaaqsiaageadvvvagGvE 113
                  tv+ +csS+l +va+a++++a g+ d++vagGv 
  KIR62302.1 197 YTVDGACSSSLLSVATACNALARGDLDAAVAGGVD 231
                 599******************************95 PP

>> FabA  FabA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.2   5.2e+03      81     102 ..    1296    1317 ..    1286    1327 .. 0.74
   2 ?   10.1   0.0   0.00028      0.46      36      72 ..    1475    1512 ..    1458    1526 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.2
                  -EEEEEEECEEEE-S---TT-. CS
        FabA   81 klvlfagvdevkfrgqvtPgdk 102 
                  +  + a+ de++fr+   P+  
  KIR62302.1 1296 EPTAVANLDEATFRRTLAPKID 1317
                  35567899*********99875 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00028
                  TSHHHHHSS.TTS----HHHHHHHHHHHHHHHHHHCC- CS
        FabA   36 newfFqgHF.pgdPvmPGvLgleamaQlvgfyllksgg 72  
                  ++ +   H+  gd ++P vLg+eamaQ+++++++++++
  KIR62302.1 1475 DDLYLADHLlDGDLLFPAVLGMEAMAQAASALTGRTEA 1512
                  4566677752578899**************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1931 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.16u 0.35s 00:00:01.50 Elapsed: 00:00:00.59
# Mc/sec: 9820.95
//
Query:       KIR62303.1  [L=641]
Description: RNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-18   67.1  15.3    8.1e-06   26.3   0.2    6.2  5  VCBS             Repeat domain in Vibrio, Colwellia, Bradyrhi
    1.1e-13   50.9   1.6    2.6e-13   49.7   1.6    1.6  1  UnbV_ASPIC       ASPIC and UnbV
    1.9e-06   27.9  10.4    0.00011   22.3   0.3    4.5  4  FG-GAP           FG-GAP repeat
     0.0015   18.5   0.0     0.0048   16.9   0.0    1.8  1  Pro_Al_protease  Alpha-lytic protease prodomain


Domain annotation for each model (and alignments):
>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.9e-06     0.013      31      61 .]     113     143 ..      73     143 .. 0.83
   2 !   22.2   2.2   3.5e-08   0.00016       1      61 []     196     292 ..     196     292 .. 0.63
   3 !   26.3   0.2   1.8e-09   8.1e-06       1      61 []     281     355 ..     281     355 .. 0.72
   4 !    9.2   0.1   0.00041       1.8      29      60 ..     392     424 ..     360     424 .. 0.64
   5 ?    4.7   0.0      0.01        45      14      61 .]     468     516 ..     463     516 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.9e-06
        VCBS  31 dvtktslggsgggtgvavgDlDgDGdlDllv 61 
                 d+++ +++++++++g+++gD++ DG++Dl+v
  KIR62303.1 113 DPAPLPFDDTMAPMGCVPGDYNLDGRMDLMV 143
                 45566788899******************97 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 3.5e-08
        VCBS   1 DldgDGrlDlvva...........................ndgglrvyrnng.....dGtftdvtk...tslgg.sgggtgvavgDlDgDGdlDllv 61 
                 DldgDGr+D+v++                           n gg +v+r+       + + t+v +   +++ + +g+  g+ ++Dl g G +D++v
  KIR62303.1 196 DLDGDGRPDVVIGnyfpesdvlntrgqdnvemnetlssatNGGGSHVLRWVSatsgdNPSVTFVPEraaIPFVAsTGWTLGLNAADLTGRGLPDVYV 292
                 9************7777777776665555555555555433444666666643322222344443321234444466667***************98 PP

  == domain 3  score: 26.3 bits;  conditional E-value: 1.8e-09
        VCBS   1 DldgDGrlDlvvand.gglrvyrnng.dGtft.........dvtktslgg.........sgggtgvavgDlDgDGdlDllv 61 
                 Dl g G++D++vand g+ ++++n    G+ +         +   t   +         s+ g+g+++gDlD++G  D++v
  KIR62303.1 281 DLTGRGLPDVYVANDfGHDHLLHNVSrPGRIEfkvavgertP---T---TpksfvlgngSFKGMGIDFGDLDRNGSFDMMV 355
                 899**********955*******9975676442244442222...2...122344455599999**************987 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00041
        VCBS  29 ft.dvtktslggsgggtgvavgDlDgDGdlDll 60 
                 ft ++++  l+ sg+g+ v +gD+ + Gdl+++
  KIR62303.1 392 FTqEARPLGLAWSGWGWDVKFGDFLNSGDLEVV 424
                 3313333456669*****************986 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.01
        VCBS  14 ndgglrvyrnngdGtftdvtkt.slggsgggtgvavgDlDgDGdlDllv 61 
                 ++++l ++  + +G f ++tk+  l+ +   +g+a +D  g G lDl+v
  KIR62303.1 468 GSQPLAFFARTESGEFANITKQvGLDVPIPTRGIATADTRGIGALDLAV 516
                 567788999999********985777788888******99999999987 PP

>> UnbV_ASPIC  ASPIC and UnbV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   1.6   5.8e-17   2.6e-13       1      57 [.     558     617 ..     558     628 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 5.8e-17
  UnbV_ASPIC   1 AiGArVtvtyaga.tqlrevdpgrGylsssdprlhFGLGkatkidsvevrWp..dGkvqt 57 
                 A+GA+Vtvt++++ +q+ ++d+g+G+ +++++++hFGLG+++   +v  rW+  +G++  
  KIR62303.1 558 AYGATVTVTTPDGrKQISQLDGGSGHGGKRSFEVHFGLGASSGPVTVDMRWRdlSGQQHS 617
                 89*******99666*************************************844554443 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0     0.001       4.7       7      21 ..     130     144 ..     127     150 .. 0.90
   2 !   22.3   0.3   2.4e-08   0.00011       5      26 ..     192     215 ..     189     222 .. 0.75
   3 ?    0.6   0.7      0.14   6.3e+02       5      28 ..     277     296 ..     275     300 .. 0.81
   4 ?   -0.3   0.1      0.27   1.2e+03       5      21 ..     340     356 ..     337     372 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.001
                 EESTSSSSS-EEEEE CS
      FG-GAP   7 vgDvNGDGyaDLavG 21 
                  gD+N DG  DL v+
  KIR62303.1 130 PGDYNLDGRMDLMVT 144
                 79**********987 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 2.4e-08
                 EEEESTSSSSS-EEEEEE..TT-E CS
      FG-GAP   5 lavgDvNGDGyaDLavGA..pesk 26 
                   v D++GDG +D+++G   pes+
  KIR62303.1 192 SLVSDLDGDGRPDVVIGNyfPESD 215
                 4577*************7666655 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.14
                 EEEESTSSSSS-EEEEEETT-ETC CS
      FG-GAP   5 lavgDvNGDGyaDLavGApeskgg 28 
                 l ++D+ G G++D+ v+    +++
  KIR62303.1 277 LNAADLTGRGLPDVYVA----NDF 296
                 789999999******99....554 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.27
                 EEEESTSSSSS-EEEEE CS
      FG-GAP   5 lavgDvNGDGyaDLavG 21 
                 +  gD++  G +D  v 
  KIR62303.1 340 IDFGDLDRNGSFDMMVS 356
                 5679******9997665 PP

>> Pro_Al_protease  Alpha-lytic protease prodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.1e-06    0.0048      29      47 ..      86     104 ..      75     108 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
  Pro_Al_protease  29 VDvatNkVVVtadsgvtaa 47 
                      VDv+tNkVVVt +++++++
       KIR62303.1  86 VDVRTNKVVVTYAPTAPKE 104
                      9*************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 4109.45
//
Query:       KIR62304.1  [L=371]
Description: peptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-23   83.8   0.1    3.8e-22   79.0   0.1    2.1  1  Peptidase_M20  Peptidase family M20/M25/M40
    2.2e-15   56.5   0.1    3.5e-15   55.8   0.1    1.3  1  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
      0.025   14.3   0.0      0.046   13.4   0.0    1.5  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.1   6.3e-26   3.8e-22       1     205 [.      61     349 ..      61     351 .. 0.86

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 6.3e-26
                    EEEEES-BSS.TTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHHTTTCESEEE CS
                    xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVp.eeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegleerekvdavf 95 
                    ll +H+D+V  e++t +w  pf+l e      G+G++dmk g++ ++ al  l d        + +l+++dEE+g+  ++ l+e+  ++++ +a  
     KIR62304.1  61 LLLGHYDTVWpEGTTRDW--PFALAE--HIATGPGVCDMKSGIVQLVTALSLLPDPS-----RVGVLLTCDEESGSPTSRPLIEQ--QARRSRA-- 143
                    688*******8888899*..*****4..599*******************9888865.....9**********877888999993..3456666.. PP

                    EEEEESSSBTCHSTETEEEE............................................................................ CS
                    xxxxxxxxxxxxxxxxxxxx............................................................................ RF
  Peptidase_M20  96 elhieepgileagklaigvv............................................................................ 115
                     ++++ep+    g l  +v                                                                             
     KIR62304.1 144 -VLVGEPSTET-GAL--KVArkggsryeitvrgraahagvephrgvnaavelahqvlavrafaaegtsvtptvlsagsisnqvpesatfcvdvraw 235
                    .5599998888.663..33355899*********************************************************************** PP

                    ......................EEEEEEE..EEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEE.EESSSBHTHHHH..TTTEEEEEEE.SSGGCT CS
                    ......................xxxxxxx..xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx..xxxxxxxxxx.xxxxxx RF
  Peptidase_M20 116 ......................kvevell..eggapvtln.dsplvkalaeaaeelfgekveli.vsgpggtdarff..agiptvmifg.pgsgla 182
                                          +  +      + +p       pl +++++a +el g+ + +    + g++da+f   +g+ t++++g  g g++
     KIR62304.1 236 treeldrvdrqihaltpqlaeaA--LVVGggINRYPLQEAvAMPLLEVARRAGREL-GLPPLEAaHAA-GASDANFTgsLGVATLDGLGgVG-GGS 326
                    *****************988542..3333224444444448888***********8.98844442566.********99999999****888.*** PP

                    TSTTTEEEHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 183 HspnEyvdledlekgikvlarll 205
                    H+  E+vd++++++ +++la+++
     KIR62304.1 327 HARSEWVDVSQMPDRAALLAATV 349
                    *******************9987 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.1   5.9e-19   3.5e-15       1     103 [.     158     253 ..     158     258 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 5.9e-19
                 SEB-EEEEEEEEEE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHH CS
   M20_dimer   1 ighkGlaggkitvkgkagHsg.apgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeie 98 
                 +++kG   ++itv+g+a+H+g  p++g+NA  +la+ + + ++          + +t++++t++++Gs +n +p++a++ +d+R    e++++v  +i 
  KIR62304.1 158 VARKGGSRYEITVRGRAAHAGvEPHRGVNAAVELAHQVLAVRAF--------AAEGTSVTPTVLSAGSISNQVPESATFCVDVRAWTREELDRVDRQIH 248
                 589****************************************9........5679****************************************999 PP

                 HHHTS CS
   M20_dimer  99 eilek 103
                 ++  +
  KIR62304.1 249 ALTPQ 253
                 87655 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.7e-06     0.046      10      90 ..      55     142 ..      50     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.7e-06
                    CESEEEEEEEE--B-TTT...............TCCT---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHHHHHHCCCTT CS
  Peptidase_M28  10 atdevlllgAHyDsvgvg...............rgpifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkafakakpelkk 90 
                    a+d+++ll +HyD+v  +                gp   G+ D  sg++ l++ + +l +       +v +l++  EE g   S+ +++++  +++
     KIR62304.1  55 AEDQRVLLLGHYDTVWPEgttrdwpfalaehiaTGP---GVCDMKSGIVQLVTALSLLPD-----PSRVGVLLTCDEESGSPTSRPLIEQQARRSR 142
                    45899**********988999*9***9999988888...********************9.....568999*************999954333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2468.17
//
Query:       KIR62305.1  [L=136]
Description: MerR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-10   40.8   0.0    3.1e-10   40.1   0.0    1.4  1  HTH_17         Helix-turn-helix domain
      2e-10   40.2   0.1    3.3e-10   39.6   0.1    1.3  1  MerR           MerR family regulatory protein
    5.4e-10   39.4   2.0    5.4e-10   39.4   2.0    1.7  2  TOBE           TOBE domain
    3.1e-07   30.4   0.0    5.1e-07   29.7   0.0    1.3  1  MerR_1         MerR HTH family regulatory protein
    7.2e-05   22.7   0.3    0.00016   21.6   0.2    1.7  1  HTH_29         Winged helix-turn helix
    0.00045   19.9   0.1     0.0012   18.6   0.1    1.8  2  HTH_23         Homeodomain-like domain
     0.0005   20.1   0.1    0.00097   19.2   0.1    1.6  1  HTH_28         Helix-turn-helix domain
    0.00084   18.7   0.1     0.0025   17.2   0.1    1.7  1  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
     0.0036   17.4   0.2     0.0079   16.3   0.2    1.6  1  AbiEi_4        Transcriptional regulator, AbiEi antitoxin
     0.0042   16.8   0.0      0.008   15.9   0.0    1.4  1  HTH_DeoR       DeoR-like helix-turn-helix domain
     0.0078   16.5   5.1      0.043   14.2   5.1    2.1  1  HTH_31         Helix-turn-helix domain
  ------ inclusion threshold ------
      0.018   14.8   0.2      0.066   13.1   0.0    1.9  2  DUF746         Domain of Unknown Function (DUF746)
      0.092   12.8   0.0       0.14   12.2   0.0    1.2  1  HTH_Tnp_IS630  Transposase
       0.11   12.1   0.0       0.21   11.3   0.0    1.5  1  Sigma70_r4_2   Sigma-70, region 4
       0.31   10.8   1.2        0.4   10.5   0.0    1.7  2  HTH_8          Bacterial regulatory protein, Fis family


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   2.6e-13   3.1e-10       2      49 ..       2      50 ..       1      52 [. 0.89

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 2.6e-13
      HTH_17  2 ltveEaAelLgvsrstvyrlirrgelpaak.iGrrwriprsdleewlek 49
                + + EaAelLgvs  tv+r++++g+l a++   +++  +  dl ++ ++
  KIR62305.1  2 FRIGEAAELLGVSTDTVRRWVDAGRLAATRdAQGHRVLDGVDLAAFVRA 50
                5789**********************888886688**********9875 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.1   2.7e-13   3.3e-10       1      37 [.       3      38 ..       3      38 .. 0.98

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 2.7e-13
                EHHHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSSEE CS
        MerR  1 tIgevAeltGvsprtLRyYEreGLipppeRtegGyRl 37
                +Ige+Ael+Gvs++t+R++ + G + +++R++ G+R+
  KIR62305.1  3 RIGEAAELLGVSTDTVRRWVDAGRL-AATRDAQGHRV 38
                7************************.**********6 PP

>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       9.7   1.2e+04      30      43 ..      41      53 ..      38      58 .. 0.56
   2 !   39.4   2.0   4.5e-13   5.4e-10       1      62 [.      62     122 ..      62     124 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 9.7
        TOBE 30 gatLtArvtrrsae 43
                g +L+A v r++a+
  KIR62305.1 41 GVDLAAFV-RAAAA 53
                44566666.34444 PP

  == domain 2  score: 39.4 bits;  conditional E-value: 4.5e-13
        TOBE   1 ssarNqlpgtVvvveplgseveVrvdlgggatLtArvtrrsaeeLgLapGeeVfalikaakv 62 
                 ssarN+l+g V++v+   + ++V++++g+   +++ ++r+++++LgL++G  ++a+ik++ v
  KIR62305.1  62 SSARNRLRGIVTAVVKDTVMAQVDIQAGPFR-VVSLMSREAVDDLGLEVGAIAVAVIKSTTV 122
                 79****************9999999999999.***************************977 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   4.3e-10   5.1e-07       1      44 [.       2      45 ..       2      52 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 4.3e-10
                EEHHHHHHHHTS-HHHHHHHHHHTT-S-EE-TTS-EEEEHHHHH CS
      MerR_1  1 ysigevakilgvtthtlrywekegllkpkrteggrryYtdedie 44
                ++ige+a++lgv+t+t+r w + g l   r+ +g+r  +  d++
  KIR62305.1  2 FRIGEAAELLGVSTDTVRRWVDAGRLAATRDAQGHRVLDGVDLA 45
                69**********************************98887776 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.2   1.4e-07   0.00016      15      48 ..       4      34 ..       2      45 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.4e-07
      HTH_29 15 vsqiAkllglsrrtvyrwlkrfeegGlaalldrr 48
                + ++A+llg+s +tv+rw+++   g+laa++d  
  KIR62305.1  4 IGEAAELLGVSTDTVRRWVDA---GRLAATRDAQ 34
                569****************99...9999988843 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   9.7e-07    0.0012      20      40 ..       4      24 ..       2      31 .. 0.86
   2 ?   -3.3   0.0       7.3   8.8e+03       3      11 ..      63      72 ..      62      79 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.7e-07
      HTH_23 20 vreIAreLgvsrrTvyrwlkr 40
                + e+A++Lgvs  Tv+rw+ +
  KIR62305.1  4 IGEAAELLGVSTDTVRRWVDA 24
                569***************976 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.3
      HTH_23  3 sereRlr.il 11
                s+r+Rlr i+
  KIR62305.1 63 SARNRLRgIV 72
                6788888444 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   8.1e-07   0.00097      14      34 ..       3      23 ..       1      37 [. 0.86

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 8.1e-07
      HTH_28 14 svreaArelgisrrtvyrWik 34
                ++ eaA++lg+s +tv+rW+ 
  KIR62305.1  3 RIGEAAELLGVSTDTVRRWVD 23
                689****************96 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   2.1e-06    0.0025      33      49 ..       7      23 ..       6      25 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.1e-06
  HTH_Tnp_ISL3 33 vArqlgvSwtTVwrild 49
                  +A++lgvS++TV+r++d
    KIR62305.1  7 AAELLGVSTDTVRRWVD 23
                  8**************98 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   6.6e-06    0.0079      14      39 ..       2      28 ..       1      31 [. 0.94

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.6e-06
     AbiEi_4 14 fttrelea.aGispsalrrLvrkGwLv 39
                f+  e+++ +G+s+ ++rr+v++G+L 
  KIR62305.1  2 FRIGEAAElLGVSTDTVRRWVDAGRLA 28
                9************************95 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.7e-06     0.008      16      33 ..       3      20 ..       1      23 [. 0.93

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.7e-06
    HTH_DeoR 16 sveelvellgvSeaTiRR 33
                ++ e++ellgvS+ T+RR
  KIR62305.1  3 RIGEAAELLGVSTDTVRR 20
                689**************9 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   5.1   3.6e-05     0.043      18      64 .]       5      61 ..       2      61 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.6e-05
      HTH_31 18 eevAerlgvsestlsrlEqGrrgrp.spa..........vlealaralgldpaerael 64
                 e+Ae+lgvs +t++r+  + r +  +++          +l+a++ra  + p+e+ael
  KIR62305.1  5 GEAAELLGVSTDTVRRWVDAGR-LAaTRDaqghrvldgvDLAAFVRAAAAAPEEHAEL 61
                69*****************666.4433334555666666****************997 PP

>> DUF746  Domain of Unknown Function (DUF746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.5e-05     0.066      15      35 ..       4      24 ..       2      37 .. 0.83
   2 ?   -1.4   0.0       1.8   2.1e+03      17      32 ..     100     115 ..      95     123 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.5e-05
      DUF746 15 laeaadllgtdegiiakwvre 35
                + eaa+llg++ +++++wv+ 
  KIR62305.1  4 IGEAAELLGVSTDTVRRWVDA 24
                569****************86 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.8
      DUF746  17 eaadllgtdegiiakw 32 
                 ea d lg+ +g ia  
  KIR62305.1 100 EAVDDLGLEVGAIAVA 115
                 8889999998888755 PP

>> HTH_Tnp_IS630  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00012      0.14      21      63 ..       4      46 ..       2      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
  HTH_Tnp_IS630 21 itkaskvfkvgratvyrWlkreelaatkvetrkrkidrkelke 63
                   i +a ++ +v+  tv rW++  +laat++ + +r +d  +l  
     KIR62305.1  4 IGEAAELLGVSTDTVRRWVDAGRLAATRDAQGHRVLDGVDLAA 46
                   77899999**************************999877765 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00017      0.21      30      49 ..       5      24 ..       2      28 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
                  HHHHHHHT--HHHHHHHHHH CS
  Sigma70_r4_2 30 kEIAellgisegtVksrlsR 49
                   E+Aellg+s  tV++++  
    KIR62305.1  5 GEAAELLGVSTDTVRRWVDA 24
                  69*************99855 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00034       0.4      20      37 ..       3      20 ..       2      20 .. 0.89
   2 ?   -3.5   0.6       8.2   9.8e+03      18      25 ..      46      53 ..      44      54 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00034
                -HHHHHHHHTS-HHHHHH CS
       HTH_8 20 nkskAArlLGisRrtLyr 37
                ++ +AA+lLG+s  t++r
  KIR62305.1  3 RIGEAAELLGVSTDTVRR 20
                6889********999987 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8.2
                TT-HHHHH CS
       HTH_8 18 gGnkskAA 25
                 +++++AA
  KIR62305.1 46 AFVRAAAA 53
                57888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1037.32
//
Query:       KIR62306.1  [L=350]
Description: ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-33  113.6   0.0    1.3e-32  113.1   0.0    1.2  1  ABC_tran   ABC transporter
    2.8e-14   53.2   0.4    2.8e-14   53.2   0.4    2.8  3  TOBE       TOBE domain
    4.4e-08   33.3   0.0    1.8e-05   24.7   0.0    2.2  2  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
    0.00035   20.7   4.9     0.0014   18.8   0.4    3.4  3  TOBE_2     TOBE domain
     0.0018   18.1   0.4      0.012   15.5   0.1    2.6  2  TOBE_3     TOBE-like domain
     0.0021   17.5   0.0        1.5    8.2   0.0    2.1  2  SMC_N      RecF/RecN/SMC N terminal domain
      0.004   16.9   0.0     0.0078   15.9   0.0    1.5  1  AAA_29     P-loop containing region of AAA domain
     0.0041   17.6   0.0     0.0055   17.2   0.0    1.1  1  AAA_23     AAA domain
     0.0084   15.8   0.1      0.027   14.2   0.1    1.8  1  AAA_30     AAA domain
     0.0087   16.2   0.2      0.032   14.4   0.2    1.9  1  AAA_33     AAA domain
  ------ inclusion threshold ------
      0.016   15.5   0.2      0.034   14.4   0.2    1.8  1  AAA_28     AAA domain
      0.037   13.6   0.0      0.063   12.9   0.0    1.3  1  AAA_27     AAA domain
      0.054   13.1   0.0      0.083   12.5   0.0    1.2  1  SRP54      SRP54-type protein, GTPase domain
       0.06   13.6   0.0       0.15   12.3   0.0    1.7  1  AAA_22     AAA domain
      0.072   13.5   2.9       0.24   11.8   2.8    1.9  1  AAA_16     AAA ATPase domain
      0.096   13.1   0.0       0.42   11.1   0.0    1.8  2  AAA        ATPase family associated with various cellular act
        0.2   11.6   0.2       0.41   10.6   0.1    1.6  2  NACHT      NACHT domain
       0.25   11.4   0.1       0.44   10.6   0.1    1.3  1  TsaE       Threonylcarbamoyl adenosine biosynthesis protein T
        5.1    7.3   5.8       0.76   10.0   1.0    2.1  2  NR_Repeat  Nuclear receptor repeat


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   0.0   1.4e-35   1.3e-32       3     136 ..      16     162 ..      15     163 .. 0.95

  Alignments for each domain:
  == domain 1  score: 113.1 bits;  conditional E-value: 1.4e-35
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren.............esdee 84 
                 +v l +++ge+va++G+nGaGK+t l++lagl+  ++G+++ldg dl++       +  r+ +gv++q+  lfp+l++r+n             +++++
  KIR62306.1  16 DVALRVRAGEVVALLGPNGAGKTTALRALAGLHPLAAGHLTLDGVDLDRpdgrVWVPPERRPVGVVFQDYLLFPHLSARDNvafgprrrgadrrAARAR 114
                 68899********************************************98877788899*****************************9999888899 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++l+++gl + + ++     ++LSgGq qrvalaral+ +p+llllDEp 
  KIR62306.1 115 ADAWLDRVGLAGYARRRP----RQLSGGQAQRVALARALAVEPTLLLLDEPL 162
                 ************999998....*****************************7 PP

>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.7   1.6e+03      16      40 ..      10      33 ..       6      37 .. 0.78
   2 ?   -1.8   0.0       4.2     4e+03      24      56 ..     178     192 ..     169     202 .. 0.55
   3 !   53.2   0.4   2.9e-17   2.8e-14       2      62 ..     285     343 ..     284     345 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.7
        TOBE 16 plgseveVrvdlgggatLtArvtrr 40
                 +g +  V +++ +g+ ++A + ++
  KIR62306.1 10 RGGFHLDVALRVRAGE-VVALLGPN 33
                6778999999999999.99987765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.2
        TOBE  24 rvdlgggatLtArvtrrsaeeLgLapGeeVfal 56 
                 + +lg++                  pG +V ++
  KIR62306.1 178 HRHLGAH------------------PGATVLVT 192
                 4444444..................55554443 PP

  == domain 3  score: 53.2 bits;  conditional E-value: 2.9e-17
        TOBE   2 sarNqlpgtVvvveplgseveVrvdlgggatLtArvtrrsaeeLgLapGeeVfalikaakv 62 
                 s+rN++p+tV  v  +g    +rv+l+g  ++ A vt++++++L+L+pG++V+a++kaa++
  KIR62306.1 285 SPRNTWPATVAGVQRHG--DHLRVELDGPLPVSADVTPAAVAALRLRPGQQVWAAVKAAET 343
                 99***************..566777777778***************************986 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.9e-08   1.8e-05       2      58 ..      27      84 ..      26     113 .. 0.80
   2 !    6.6   0.0    0.0063         6     233     299 ..     131     195 ..     126     197 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.9e-08
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl.drdvegltdelsggggirkipslldlydpeipf 58
                 +l GpNg+GK++ L+al +l+ l +++++ ++ +l++  g  ++p + ++      +
  KIR62306.1 27 VALLGPNGAGKTTALRALAGLHPLaAGHLTLDGVDLDRPDGRVWVPPERRPVGVVFQD 84
                689******************9999888888888888888888877776666555555 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0063
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHP.kllrrllellkelsrngaQviltTHSp 299
                  +r+lS G+ +  al+ al+  +   +lll+DEp + L+   ++ + +el + l ++ +  +l+TH+p
  KIR62306.1 131 RPRQLSGGQAQRVALARALAVEP---TLLLLDEPLAALDArTRVDTRAELHRHLGAHPGATVLVTHDP 195
                 67888999888879999999888...*********999983222333344344444555555566665 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.6   2.4e+03      30      53 ..      12      35 ..      10      43 .. 0.75
   2 ?    1.7   0.1      0.31   2.9e+02      44      76 .]     170     201 ..     162     201 .. 0.67
   3 !   18.8   0.4   1.4e-06    0.0014       7      72 ..     274     342 ..     268     345 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.6
      TOBE_2 30 Gsstryvvelaggqlvvvrqpnad 53
                G ++++ +++ +g+ v++  pn++
  KIR62306.1 12 GFHLDVALRVRAGEVVALLGPNGA 35
                668888899999988888777776 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.31
      TOBE_2  44 lvvvrqpnadrdsalapGdtVelswdpddavvl 76 
                 +v +r + ++ +    pG tV ++ dp da+vl
  KIR62306.1 170 RVDTRAELHR-HLGAHPGATVLVTHDPLDALVL 201
                 4333333333.34567***********999997 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 1.4e-06
      TOBE_2   7 klrla...aagg.anglsGtVedveylGsstryvvelaggqlvvvrqpnadr.dsalapGdtVelswdpdd 72 
                 ++ l+   ++g  +n+ ++tV  v+  G+++r  vel+g   v + + +a+  + +l+pG++V+ +++++ 
  KIR62306.1 274 AVALHparPDGSpRNTWPATVAGVQRHGDHLR--VELDGPLPVSADVTPAAVaALRLRPGQQVWAAVKAAE 342
                 566666554444469***************99..7788888888888888876799********9988876 PP

>> TOBE_3  TOBE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.8   2.6e+03      45      58 ..     179     192 ..     172     193 .. 0.74
   2 !   15.5   0.1   1.3e-05     0.012       5      57 ..     288     336 ..     283     339 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.8
      TOBE_3  45 eelglaeGetvylr 58 
                 ++lg  +G+tv ++
  KIR62306.1 179 RHLGAHPGATVLVT 192
                 56789999999876 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.3e-05
      TOBE_3   5 gglpatvrrirpvGpivRlELerlgdtgeliEvelprdrfeelglaeGetvyl 57 
                 +++patv+ +++ G   R+EL    d   ++ +++++++   l l++G++v++
  KIR62306.1 288 NTWPATVAGVQRHGDHLRVEL----DGPLPVSADVTPAAVAALRLRPGQQVWA 336
                 799******************....5667**********************97 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0028       2.6      25      44 ..      25      44 ..      17      51 .. 0.87
   2 !    8.2   0.0    0.0016       1.5     136     176 ..     134     170 ..      81     199 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0028
                SEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAi 44
                ++ a++GpNG+GK+  l A+
  KIR62306.1 25 EVVALLGPNGAGKTTALRAL 44
                57799*********999887 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0016
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknv 176
                 +LSgG+ + vala  +A++      l llDe  aaLD++ +
  KIR62306.1 134 QLSGGQAQRVALARALAVEP----TLLLLDEPLAALDARTR 170
                 8************9999863....5999*********9865 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.2e-06    0.0078       6      43 ..       7      45 ..       2      48 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.2e-06
      AAA_29  6 lvNWgtfdg.htieidlkgatlltGpsGsGKSTllDAiq 43
                +++ g f+    ++++  +++ l Gp+G+GK+T l A++
  KIR62306.1  7 VADRGGFHLdVALRVRAGEVVALLGPNGAGKTTALRALA 45
                5677889987888888666**************998875 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.9e-06    0.0055      21      40 ..      26      45 ..      12      47 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.9e-06
      AAA_23 21 ltlItGpNGaGKTTildAik 40
                ++++ GpNGaGKTT l+A+ 
  KIR62306.1 26 VVALLGPNGAGKTTALRALA 45
                67899*************85 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   2.8e-05     0.027      18      42 ..      24      48 ..      16      59 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.8e-05
      AAA_30 18 drvavltGpAGtGKttalkalreaw 42
                  v++l Gp G+GKttal+al+ ++
  KIR62306.1 24 GEVVALLGPNGAGKTTALRALAGLH 48
                35999***************99877 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   3.4e-05     0.032       1      33 [.      26      93 ..      26     184 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.4e-05
      AAA_33  1 lvllvGlpGsGKstlaerllkklg..avllssdt.................................l 33
                +v l G++G+GK+t ++ l+  ++  a +l+ d                                  +
  KIR62306.1 26 VVALLGPNGAGKTTALRALAGLHPlaAGHLTLDGvdldrpdgrvwvpperrpvgvvfqdyllfphlsA 93
                78999**************8766676888888765666666666666655555555555555555542 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   3.6e-05     0.034       2      27 ..      27      71 ..      26     184 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.6e-05
      AAA_28  2 ivitGgestGKTtlleaLa.................ar..gypvv 27
                ++++G+ ++GKTt l+aLa                 +r  g ++v
  KIR62306.1 27 VALLGPNGAGKTTALRALAglhplaaghltldgvdlDRpdGRVWV 71
                899****************76666544443333333225556666 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.7e-05     0.063      25      49 ..      23      47 ..      10      48 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.7e-05
      AAA_27 25 eadlhliyGpNEAGKstalrAisdl 49
                + ++  ++GpN AGK+talrA+  l
  KIR62306.1 23 AGEVVALLGPNGAGKTTALRALAGL 47
                55667789*************9765 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.8e-05     0.083       3      28 ..      26      51 ..      24      66 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.8e-05
                EEEEEESTTSSHHHHHHHHHHHHHHT CS
       SRP54  3 villvGlqGaGKTttlaKLaallkke 28
                v++l+G++GaGKTt+l  La l    
  KIR62306.1 26 VVALLGPNGAGKTTALRALAGLHPLA 51
                899*************9999776555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00016      0.15       7      33 ..      26      52 ..      21     161 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00016
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeea 33
                ++++ G+ G+GKTt lr l+  ++ +a
  KIR62306.1 26 VVALLGPNGAGKTTALRALAGLHPLAA 52
                68899**************98887555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.8   0.00025      0.24      18      46 ..      20      46 ..      14     207 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00025
      AAA_16 18 rvrsgrpelvllsGesGvGKsslvrellr 46
                rvr+g  e+v l G+ G GK++ +r+l+ 
  KIR62306.1 20 RVRAG--EVVALLGPNGAGKTTALRALAG 46
                57888..79****************9984 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00044      0.42       2      20 ..      28      46 ..      27      83 .. 0.87
   2 ?   -0.7   0.0       1.9   1.7e+03      48      74 ..     141     168 ..     127     181 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00044
                EEESSTTSSHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavak 20
                 l Gp G GKT++ +a+a 
  KIR62306.1 28 ALLGPNGAGKTTALRALAG 46
                699**************97 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.9
                 HHHHHHHHTS.TSEEEEEETGGGHHHHH CS
         AAA  48 elfkeakeka.kpsilfiDEidalaksr 74 
                 + ++ a++ a +p+ l++DE  a   +r
  KIR62306.1 141 QRVALARALAvEPTLLLLDEPLAALDAR 168
                 445556777788999****966666666 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00043      0.41       2      21 ..      26      45 ..      25      61 .. 0.86
   2 ?   -3.3   0.0       7.7   7.3e+03      91     126 ..     159     192 ..     141     198 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00043
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                +v+l G++G GKTt l+ la
  KIR62306.1 26 VVALLGPNGAGKTTALRALA 45
                799**************998 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.7
                 TT-SS-TCH.........HHHHHCTTTTT--EEEEE CS
       NACHT  91 DelvtdlgqkekqpvrtlLselirkkllpeaslllt 126
                 De  + l++ ++  +r  L++ + +   p+a++l+t
  KIR62306.1 159 DEPLAALDARTRVDTRAELHRHLGA--HPGATVLVT 192
                 4555555555666666666666666..666666666 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00046      0.44      18      40 ..      23      45 ..      11      51 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00046
                HTEEEEEEESTTSSHHHHHHHHH CS
        TsaE 18 lgdvilLeGdLGaGKTtlvrgla 40
                +g+v++L G+ GaGKTt  r+la
  KIR62306.1 23 AGEVVALLGPNGAGKTTALRALA 45
                3889**************99987 PP

>> NR_Repeat  Nuclear receptor repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3       4.8   4.5e+03      29      47 ..     281     299 ..     272     300 .. 0.80
   2 ?   10.0   1.0   0.00081      0.76      16      47 ..     312     343 ..     311     345 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.8
   NR_Repeat  29 aPearpgapwWgcscGaqr 47 
                  P   p++ w  +  G+qr
  KIR62306.1 281 RPDGSPRNTWPATVAGVQR 299
                 6888899999999999998 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00081
   NR_Repeat  16 lltSAkqthaApeaPearpgapwWgcscGaqr 47 
                 l+ SA+ t+aA  a + rpg + W +   a+ 
  KIR62306.1 312 LPVSADVTPAAVAALRLRPGQQVWAAVKAAET 343
                 89**********************99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2696.64
//
Query:       KIR62307.1  [L=297]
Description: aldo/keto reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-42  146.0   0.0    8.6e-42  143.3   0.0    1.9  1  Aldo_ket_red    Aldo/keto reductase family
  ------ inclusion threshold ------
      0.069   12.7   0.0        0.1   12.1   0.0    1.2  1  Porphobil_deam  Porphobilinogen deaminase, dipyromethane cofa


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.3   0.0   9.6e-46   8.6e-42       2     292 ..      24     292 ..      23     294 .. 0.91

  Alignments for each domain:
  == domain 1  score: 143.3 bits;  conditional E-value: 9.6e-46
                   EEEE-SSS-ST....TS-HHHHHHHHHHHHHTT--EEE--TT-..TTTHHHHHHHHHHHH-TTTGGG-EEEEEE...--SSSTTSSSS-HHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgsk...eeiskeealellrraleaGinffDtAevY..gkgqseellGealkksrkkreeviiatKv...dlrdaeiksglskeniresl 90 
                   +glG+++l+     ++ ++  a+ +lrra+e G+n++DtA +Y     ++ el+  al+      e+++iatKv   ++  +e+ +  ++e++r ++
    KIR62307.1  24 MGLGAMRLTMTadgGPSDRGRAVGVLRRAVELGVNHIDTASFYfsALRSANELINTALAP---YPEDLVIATKVgpgKDASGEWLPLARPEQLRGQV 117
                   89******999999*****************************65555666778888888...*************99******************* PP

                   HHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEE CS
  Aldo_ket_red  91 eeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpli 187
                   ee l++Lg+d++Dl++l +   +++  +e ++al+el+++G+ir++G+Sn+   +l +a  +++ ++v+vq+ y l  +  + + l+ c+++gv+ +
    KIR62307.1 118 EENLRQLGRDHLDLVYLRQAGLESV--AEHFGALAELREAGLIRQLGISNVRPHHLPQA--QAVAPVVSVQNAYGLGYRPRHDQFLRDCAAQGVAYV 210
                   *************************..********************************..****************555555555666666***** PP

                   EBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HH CS
  Aldo_ket_red 188 aysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklsee 284
                   ++  l+    tg++   + +                     + e++++a+e+gvs+ q+ l++ l +++++ +ipg+  +++l +n++a +l+l++ 
    KIR62307.1 211 PFFSLA---TTGREAGASGV--------------------EDAEVRAVAAERGVSPVQVRLAWTLGRSPNVLAIPGTGDPDHLVANVAAGALRLTDG 284
                   999999...45444544444....................4789***************************************************** PP

                   HHHHHHHH CS
  Aldo_ket_red 285 evaeldel 292
                   ++a+l+++
    KIR62307.1 285 DLARLEAV 292
                   ****9975 PP

>> Porphobil_deam  Porphobilinogen deaminase, dipyromethane cofactor binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.1e-05       0.1     106     168 ..      81     143 ..      64     171 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.1e-05
  Porphobil_deam 106 leelpegavvgTsSlRRkaqlkklrpdlevkdlRGnvdtRlrkldegeydaiiLAaAGLkRlg 168
                     l+ +pe  v++T     k    +  p ++ ++lRG v++ lr+l ++++d + L +AGL+ + 
      KIR62307.1  81 LAPYPEDLVIATKVGPGKDASGEWLPLARPEQLRGQVEENLRQLGRDHLDLVYLRQAGLESVA 143
                     666677777777766666667778889999**************99*************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2089.62
//
Query:       KIR62308.1  [L=68]
Description: ferredoxin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-12   47.4   0.1    2.4e-12   47.2   0.1    1.0  1  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I
    5.6e-12   46.2   1.9    6.8e-12   46.0   1.9    1.1  1  Fer4_15   4Fe-4S single cluster domain
    2.8e-11   43.3   0.1    3.1e-11   43.2   0.1    1.1  1  Fer4_19   Divergent 4Fe-4S mono-cluster
  ------ inclusion threshold ------
       0.24   11.3   7.5       0.33   10.8   0.2    2.3  2  Fer4      4Fe-4S binding domain
       0.89    9.7   7.7        4.8    7.4   0.3    2.4  2  Fer4_6    4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.1   6.8e-16   2.4e-12       1      57 [.       5      61 ..       5      62 .. 0.93

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 6.8e-16
     Fer4_13  1 VDrdtCiacgaCvelaPdvFeeddeggasvvaeqptseeekadaeeAadaCPvesIg 57
                VDr +C + g+Cv +aP+vF+ dd +g +   + + ++e  +++++A++ CP  +I+
  KIR62308.1  5 VDRGRCCGSGNCVVVAPEVFDQDDTDGLVLLRRPEPPPEAAERVRRAVEVCPAGAIR 61
                9**************************9888777777999****************7 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   1.9   1.9e-15   6.8e-12       1      65 [.       3      61 ..       3      62 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 1.9e-15
     Fer4_15  1 VvvDrdaCigcglCvaeapevfelde.dglasvllddgeiaegevpddeeeaaqeAaraCPvdAIr 65
                V vDr +C g g+Cv +apevf +d+ dgl  vll      + e p++  e +++A+++CP++AIr
  KIR62308.1  3 VAVDRGRCCGSGNCVVVAPEVFDQDDtDGL--VLLR-----RPEPPPEAAERVRRAVEVCPAGAIR 61
                89***********************96666..4554.....6799********************8 PP

>> Fer4_19  Divergent 4Fe-4S mono-cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.1   8.7e-15   3.1e-11       7      62 ..       2      63 ..       1      65 [. 0.92

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 8.7e-15
     Fer4_19  7 tiednrelCihsgnCvkglpevFdpkrk.pwi.....kpdeasteeiievverCPSGALsyv 62
                ++  +r+ C++sgnCv  +pevFd+++  + +     +p  +++e+++++ve CP GA++++
  KIR62308.1  2 RVAVDRGRCCGSGNCVVVAPEVFDQDDTdGLVllrrpEPPPEAAERVRRAVEVCPAGAIRFT 63
                78999********************9976888***999999*****************9986 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   2.4     0.021        75       2      17 ..       4      19 ..       3      19 .. 0.88
   2 ?   10.8   0.2   9.2e-05      0.33      15      24 .]      52      61 ..      52      61 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.021
                EEETTTSSS-THHHHH CS
        Fer4  2 videekCigCGaCvev 17
                 +d  +C g G+Cv v
  KIR62308.1  4 AVDRGRCCGSGNCVVV 19
                699**********976 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 9.2e-05
                HHHSTTTEEE CS
        Fer4 15 vevCPvgAIt 24
                vevCP gAI+
  KIR62308.1 52 VEVCPAGAIR 61
                89*******6 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   2.1    0.0056        20       2      18 ..       3      19 ..       2      19 .. 0.92
   2 ?    7.4   0.3    0.0013       4.8      16      24 .]      52      60 ..      52      60 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0056
      Fer4_6  2 veidpdkCigCgdCvrv 18
                v++d+ +C g g+Cv+v
  KIR62308.1  3 VAVDRGRCCGSGNCVVV 19
                89************987 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0013
      Fer4_6 16 vrvCPegai 24
                v vCP+gai
  KIR62308.1 52 VEVCPAGAI 60
                68******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 499.72
//
Query:       KIR62309.1  [L=361]
Description: hypothetical protein TK50_31210 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.8e-120  399.5   0.0   9.2e-120  399.2   0.0    1.0  1  DUF3626   Protein of unknown function (DUF3626)


Domain annotation for each model (and alignments):
>> DUF3626  Protein of unknown function (DUF3626)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  399.2   0.0  5.1e-124  9.2e-120       1     301 []      52     355 ..      52     355 .. 0.99

  Alignments for each domain:
  == domain 1  score: 399.2 bits;  conditional E-value: 5.1e-124
     DUF3626   1 rvalhFhPDrlsskgrtvveaLledGvYrsqFetgisnGllaaelggeRdeWerqlFggayqeeaveaaeRPkYGaldllrasdGpapRFGsCylllrp 99 
                 r++++FhPDrl ++grtv++aL  +GvYrsqF tgisnG l+a++gg+Rd+We+++Fggayq+ +v +a+RP YG+l+ll+++dG++pRFGsC+l+lrp
  KIR62309.1  52 RLTVNFHPDRLLADGRTVADALAAQGVYRSQFATGISNGGLTAFPGGDRDRWEEAMFGGAYQATGVLPADRPTYGGLNLLDHPDGACPRFGSCHLRLRP 150
                 899************************************************************************************************ PP

     DUF3626 100 evssrstftfgdserapkekGtldefdailaalLeesferdvalGvenlkvaklvellaalreselververepsrnLdhyieaqihGdvsLerDveaL 198
                 +v++r+tf+fgds+ +p + Gt+d+++++la lL++++ ++v lGv++ ++a+l+ +l ++r+++  +  ++++ r+Ld+y+eaqihG v L rDvea 
  KIR62309.1 151 QVLARATFCFGDSHLEPPHLGTVDVPEPVLAELLDATAGTGVSLGVAGTDPATLLGALLRRRDRD--AWRAGPAVRALDDYVEAQIHGAVVLGRDVEAF 247
                 ************************************************************99999..578999************************** PP

     DUF3626 199 vaDpsfkgtdigellealaekykielqwhkGfklkvdkvpddfRGpampsLakriaae.....evvdaaliGeaaaelkkepeswsdrgelaevlqeLk 292
                 v Dpsf+gt +g++l++la++++ +l+wh+Gf+l+vd v+++fRG+ +p+La+ri+ae     e vdaaliG+aaa++++ep++w+drg la +lq+Lk
  KIR62309.1 248 VLDPSFAGTRVGRVLADLAARHGAALHWHAGFELPVDGVDAEFRGSGIPPLAARIHAEfarpgEPVDAALIGRAAASAVTEPDRWADRGPLAATLQDLK 346
                 ********************************************************99999*9************************************ PP

     DUF3626 293 lLwhvlvry 301
                 +Lwhvlvr+
  KIR62309.1 347 MLWHVLVRF 355
                 ********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2508.24
//
Query:       KIR62310.1  [L=395]
Description: protein phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-32  112.0   1.5    8.7e-32  110.6   1.2    1.8  2  SpoIIE    Stage II sporulation protein E (SpoIIE)
  ------ inclusion threshold ------
      0.061   12.9   1.0       0.64    9.6   0.9    2.5  1  PP2C_2    Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.17   1.5e+03      34      63 ..      11      38 ..       5      48 .. 0.73
   2 !  110.6   1.2   9.7e-36   8.7e-32       2     192 ..     194     383 ..     193     384 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.17
                HHTTTSHHHHHHHHHHHCHCTTSTT.TTCE CS
      SpoIIE 34 ataglepaevlkrlnralardleeeerfaT 63
                a ++++p++++++++ra+ + l+ +   + 
  KIR62310.1 11 ALREAPPDRLAEAADRAIRAALGAS--RTD 38
                5678899999999999997777665..444 PP

  == domain 2  score: 110.6 bits;  conditional E-value: 9.7e-36
                 TTEEEEEEEECSSSSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEESSSSEEEEETTSTEEEEE- CS
      SpoIIE   2 dgrlalvvgDvvGhGleAalimgllrsalrelataglepaevlkrlnralardleeeerfaTavlavydpstgkleyanaGhpppllvrpdggtkllla 100
                 ++rlal v  + G Gl+A+l+++ + +a+r++ ++g  + e ++ + +++  +++ e r+++ +l+++d  +g+++ + aG p +l +r+ g+++ ++ 
  KIR62310.1 194 GDRLALTVLNGAGTGLSASLLTAVAVNAMRNARRSGGGLVEQAELASDTVFFQHRGE-RHVATLLLELDATDGRVRAVDAGSPHVLRLRG-GSVQRVPL 290
                 79*******************************************************.9999999*************************.******** PP

                 -SS--TTTSSST-EEEEEEE--TTEEEEEESCCCCSSSHHHHHHCCCHHCHHHHCT.....HCCHHHHHHHHHHH.HTTSSSSS-EEEEEEEE CS
      SpoIIE 101 stglplGilpeadyetaelelepgdtlllyTDGvtEardsdgelfgkerllallasaegesleelldalveelle.lgsgeleDDitllvlrv 192
                 +++lplG+++e+ ye++e+++epgd+l++++DGv+ a  ++ge +g+ + ++ +++ + ++++e + ++++ l++ + +++l+DD+ +++l++
  KIR62310.1 291 EQQLPLGMFAETRYEVQEFTVEPGDRLFVVSDGVYAAAPDGGEPYGERAMARSMRATRLQPATEAVGTVMRGLQSyHADADLRDDAVVVCLDW 383
                 *******************************************************999999*****************************987 PP

>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.9   7.1e-05      0.64      91     204 ..     248     371 ..     181     375 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 7.1e-05
      PP2C_2  91 elkdyatTllaav.vtpdeivalqiGDGaivvrdrdgevqllgepdsgeyanqttfltsedaeeelrirrlkledgdalllmTDGla............ 176
                   +   +Tll+ + +t++++ a+  G   + +r r g+vq++  ++  +     +      ae + +++++++e+gd+l++++DG+             
  KIR62310.1 248 RGERHVATLLLELdATDGRVRAVDAGSPHV-LRLRGGSVQRVPLEQ--QLPLGMF------AETRYEVQEFTVEPGDRLFVVSDGVYaaapdggepyge 337
                 444444455555544444455555554444.355555555552222..2221111......2334599999***************9777766655555 PP

      PP2C_2 177 ......nslrdeerfaelleellrvleeegvseq 204
                        +  + ++ +e + +++r l++++++++
  KIR62310.1 338 ramarsMRATRLQPATEAVGTVMRGLQSYHADAD 371
                 5544332222233555555555666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2626.29
//
Query:       KIR62311.1  [L=402]
Description: nitric oxide synthase oxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.7e-122  407.2   0.0   6.6e-122  407.0   0.0    1.0  1  NO_synthase  Nitric oxide synthase, oxygenase domain


Domain annotation for each model (and alignments):
>> NO_synthase  Nitric oxide synthase, oxygenase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  407.0   0.0  3.7e-126  6.6e-122       4     353 ..      21     372 ..      18     380 .. 0.95

  Alignments for each domain:
  == domain 1  score: 407.0 bits;  conditional E-value: 3.7e-126
                  HHHHHHHHHHHHHHHHCT--CCCHHHHCCHHHHCCCCCSS----CCCHHHHHHHHHHT-TT-TTGCCCCC-EEEEETTS-SHHHHHHHHHHHHHHHHG CS
  NO_synthase   4 elleeakeFleqyykelkksseeheerleevkkeieetgtYelteeELayGaklAWRnssrcigriqWskLqvfdaRevkteeemfeallehikyatn 101
                  ++l ea+eFl+ +++e +     + +r+++v++ei+ tgtY++t+eELa+Gak+AWR s rc+gr+ W+ L+v+d+R+v+t ++++e+l++h+  a n
   KIR62311.1  21 DVLAEATEFLHLFHAERRL--PGVAARIAQVREEIAVTGTYRHTREELAHGAKVAWRQSVRCVGRVRWAGLRVRDRRDVTTVAGIAEELARHLAAADN 116
                  6899*********999655..899************************************************************************** PP

                  CCS---EEEEE-T.STT...TEEE--SBSS-B-EEE.ETTCEEE-GGGHHHHHHHHHCT----..-STT-B--EEEEETTCCEEEE---CCCS-EEEE CS
  NO_synthase 102 kGnirsaitvfkqredkkk.dvriwnsqlirYAgYkqtdgsvlgdpasveltelceklGwkgk..ktrfdvLPlvlqangedpelfeipeelvlevel 196
                  +G+i+s++tvf++++++   + riwn+qlirY g++ +dgsvlgdpa+v +te++ +lGw+++   +rfd+LP v+++  edp+l+ +p+elv ev l
   KIR62311.1 117 GGRIQSVMTVFAPDRPGVGpRARIWNDQLIRYCGHRGADGSVLGDPAQVPMTEAALALGWRPPpaPGRFDLLPWVIETAYEDPTLVRVPRELVREVAL 214
                  *************99988779****************************************99767******************************** PP

                  --SS-CCCGCC-EEEES--EE-SEEEEETTEEES---EE--EECHHHHCTTTTSTTTT--HHHHHHHTT--TT-GGGTHHHHHHHHHHHHHHHHHHHC CS
  NO_synthase 197 ehpkyewfkelglkwyavpavsnmlleigGieytaapfngwYmgteigarnladekrynlleevakklgldtskesslwkDralvelnvavlhSfqka 294
                  +hp y+wf+ l l+w+a+p++snm+l +gG++y++apfng Y + eig+rn+ d++ry+ l +va+ lgldts+e++lw+ +a++ +n+avlhSf+ a
   KIR62311.1 215 THPAYPWFAGLRLRWHALPVISNMRLRVGGVDYSCAPFNGHYLSDEIGTRNMGDRDRYDQLLTVARGLGLDTSREDTLWREHAALVINQAVLHSFRLA 312
                  ************************************************************************************************** PP

                  T--EE-HHHHHHHHHHHHHHHHCCT---B--HHHCS-SSSGGGSC.GGGS--B----SSE CS
  NO_synthase 295 kvtivDhhtaaesFlkfeeneeklrrevpadwvwlvpplsgsltp.vfhqemenyilkps 353
                  +v++ D ht +e F++f  +ee+++r v +dw+wl  +++ ++ + v+h+ ++  + +p+
   KIR62311.1 313 GVRVSDPHTESELFMRFCAQEERAGRPVHGDWSWLNGSVGWAALHaVHHRYYDPGVPNPN 372
                  **************************************9966655166666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3115.51
//
Query:       KIR62312.1  [L=170]
Description: hypothetical protein TK50_31365 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0044   17.1   5.0     0.0044   17.1   5.0    2.7  2  DivIVA        DivIVA protein
  ------ inclusion threshold ------
      0.021   14.6   0.1      0.044   13.6   0.1    1.4  1  CCDC92        Coiled-coil domain of unknown function
      0.039   14.5   3.1       0.11   13.1   3.1    1.7  1  Striatin      Striatin family
       0.14   12.6   9.2       0.14   12.6   0.3    2.4  2  ZapB          Cell division protein ZapB
       0.23   11.9   0.2        1.2    9.6   0.0    2.3  3  FlaC_arch     Flagella accessory protein C (FlaC)
       0.55   10.0   1.9        3.8    7.3   0.3    2.3  2  Viral_P18     ssRNA positive strand viral 18kD cysteine rich 
        1.5    8.6  15.6       0.06   13.2   7.2    2.3  2  HrpE          HrpE/YscL/FliH and V-type ATPase subunit E


Domain annotation for each model (and alignments):
>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   5.0   1.7e-06    0.0044      33     111 ..      15      96 ..       6     109 .. 0.78
   2 ?   -0.6   3.2       0.5   1.3e+03      79      99 ..     139     159 ..     103     167 .. 0.52

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHHHHHHHHCCCCTX.XXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  33 dyeallkeneelkekvkeleekl.keyk..eleetLkktlvvaqetaeevkanakkeaeliikeAekkaekiveeaeeeakk 111
                 ++e+l +ene+l ++v+ l++    + +    ++ + +  v aqe a+++ + a +e   ii++A+ +ae+iv+ea+++a  
  KIR62312.1  15 ELERLRRENETLVRQVEMLRHGAlPSAApqGPDSMVIELAVRAQEEANRTIEDAGAEGAEIIADARRQAEEIVAEAHRRAGA 96 
                 678888888888888888876531333210233444555688************************************9976 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.5
                 XXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  79 vkanakkeaeliikeAekkae 99 
                  +a  + +ae++ ++Ae++ae
  KIR62312.1 139 WQAYLAGQAEQVRAQAEQTAE 159
                 333333333333333333332 PP

>> CCDC92  Coiled-coil domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.7e-05     0.044      25      45 ..      12      32 ..      10      39 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.7e-05
      CCDC92 25 LHkEIekLqkenkdLtfklim 45
                LH E+e+L++en  L  +++m
  KIR62312.1 12 LHGELERLRRENETLVRQVEM 32
                9**************999999 PP

>> Striatin  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.1   4.2e-05      0.11      32     118 ..       7     146 ..       6     169 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.2e-05
    Striatin  32 arIakLegerrgaenlkkdlvrrikmLEyalkqerakylkl......kegtsaakenkkkekeeeeaeeeekseeeskskekksakeslkks....... 117
                 +rI++L+ge  + ++ +++lvr+++mL        a +         +   +   +++ +++ e+  +e ++  +++++++++ ++e+ +++       
  KIR62312.1   7 ERIGLLHGELERLRRENETLVRQVEMLRHGALPSAAPQ--GpdsmviE--LAVRAQEEANRTIEDAGAEGAEIIADARRQAEEIVAEAHRRAgallgtr 101
                 69*************************98655554431..12233321..2222223333344444455555556666777777777776667777777 PP

    Striatin 118 ............................................e 118
                                                             +
  KIR62312.1 102 pdaadaraeelrllgrvrelesrqaalaaaaqqqlgrwqaylagQ 146
                 777777777777777777766666666666666666666665554 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   5.5e-05      0.14      18      45 ..       7      34 ..       3      85 .. 0.81
   2 ?    3.2   3.6     0.046   1.2e+02      25      67 ..     116     169 ..     106     170 .] 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.5e-05
        ZapB 18 dtitlLqmeieeLkeeneelkeenrele 45
                ++i lL  e+e+L++ene+l ++ + l+
  KIR62312.1  7 ERIGLLHGELERLRRENETLVRQVEMLR 34
                7899******************999888 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.046
        ZapB  25 meieeLkeeneelkeenrele...........eeneqlkeereawqerlkkLLg 67 
                  +++eL+ ++++l+  +++             e++ +  e+ ++  + l+++Lg
  KIR62312.1 116 GRVRELESRQAALAAAAQQQLgrwqaylagqaEQVRAQAEQTAEADRQLRQVLG 169
                 578888888888888777777788888887766666666777777888888886 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00047       1.2       9      34 ..       9      34 ..       5      36 .. 0.86
   2 ?   -2.6   0.0       2.9   7.5e+03      16      28 ..      76      88 ..      74      91 .. 0.76
   3 ?   -3.6   0.0         6   1.5e+04       1       7 [.     117     123 ..     117     128 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00047
   FlaC_arch  9 lsklsteletvkkeneelsksveelk 34
                ++ l  ele +++ene l  +ve+l 
  KIR62312.1  9 IGLLHGELERLRRENETLVRQVEMLR 34
                6667889*****************95 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.9
   FlaC_arch 16 letvkkeneelsk 28
                ++ ++++ ee+  
  KIR62312.1 76 IADARRQAEEIVA 88
                5678999999865 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 6
   FlaC_arch   1 ridelEn 7  
                 r+ elE+
  KIR62312.1 117 RVRELES 123
                 7888887 PP

>> Viral_P18  ssRNA positive strand viral 18kD cysteine rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.058   1.5e+02      83     102 ..      15      33 ..       3      41 .. 0.79
   2 ?    7.3   0.3    0.0015       3.8      79     114 ..     109     148 ..      85     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.058
   Viral_P18  83 kldrlearresllasiqkkl 102
                 +l+rl +++e+l  ++ + l
  KIR62312.1  15 ELERLRRENETLVRQV-EML 33 
                 899*********9998.555 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0015
   Viral_P18  79 ddel....kldrlearresllasiqkklkaydekiallae 114
                  +el    +++ le r+ +l a  q++l +     a  ae
  KIR62312.1 109 AEELrllgRVRELESRQAALAAAAQQQLGRWQAYLAGQAE 148
                 44443347889*****************998877665555 PP

>> HrpE  HrpE/YscL/FliH and V-type ATPase subunit E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   7.2   2.4e-05      0.06      31      68 ..      71     108 ..      49     138 .. 0.74
   2 ?   -6.3   9.0         7   1.8e+04      34      66 ..     127     159 ..     104     168 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.4e-05
        HrpE  31 rarellaeArlqAeqllaqarekaeellevaveqAeaq 68 
                  + e++a+Ar qAe+++a+a+ +a+ ll    + A a+
  KIR62312.1  71 EGAEIIADARRQAEEIVAEAHRRAGALLGTRPDAADAR 108
                 5789**********************999666666654 PP

  == domain 2  score: -6.3 bits;  conditional E-value: 7
        HrpE  34 ellaeArlqAeqllaqarekaeellevaveqAe 66 
                 +l a A++q     a    +ae++ ++a + Ae
  KIR62312.1 127 ALAAAAQQQLGRWQAYLAGQAEQVRAQAEQTAE 159
                 333444444433333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1016  (0.056668); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1278.05
//
Query:       KIR62313.1  [L=256]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-12   46.9   0.3    3.2e-12   46.2   0.3    1.3  1  FR47             FR47-like protein
    1.3e-09   38.3   0.1    2.1e-09   37.7   0.1    1.3  1  Acetyltransf_1   Acetyltransferase (GNAT) family
      6e-06   26.6   0.1    1.1e-05   25.8   0.1    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.2e-05   25.2   0.0    2.1e-05   24.5   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    0.00016   21.7   0.1    0.00036   20.6   0.1    1.7  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
     0.0025   17.4   0.0     0.0032   17.1   0.0    1.1  1  GNAT_acetyltran  GNAT acetyltransferase
  ------ inclusion threshold ------
      0.013   16.2   0.0      0.022   15.5   0.0    1.4  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
      0.061   13.0   0.0        0.1   12.3   0.0    1.3  1  Acetyltransf_8   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.3   1.4e-15   3.2e-12       1      81 [.     160     244 ..     160     248 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 1.4e-15
                 EEEEEET.TT--EEEEEEE-...TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEEE CS
        FR47   1 vlGlyrk.elgelaawilrk...dggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfekie 81 
                 ++G++r+ +l+++a+  + +   ++ +lg + ++p +rrrGlg  +v+al  +++ + ++v+l v+ +N ++ rly  lGf++  
  KIR62313.1 160 YVGVRRGgALVAVAGVHVYSptwQVAALGNVTTHPGFRRRGLGAAVVAALCGRLVGEVEHVTLNVRGDNVAALRLYRGLGFTAVA 244
                 57888876667777666655111569*******************************************************9874 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.1   9.2e-13   2.1e-09      24     117 .]     149     240 ..     129     240 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 9.2e-13
                     HHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHH.TTE CS
  Acetyltransf_1  24 feesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYek.lGF 117
                     +++   l++++++ ++++g l++ ++++ + +   +va++  +  +p +r++GlG a + al  r+  e ++ + l v+ dn+aa rlY + lGF
      KIR62313.1 149 WFDARMLDTGRYVGVRRGGALVAVAGVHVYSP-TWQVAALGNVTTHPGFRRRGLGAAVVAALCGRLVGE-VEHVTLNVRGDNVAALRLY-RgLGF 240
                     44445556677777999999888887777777.557****************************99999.6679***************.98**9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   4.8e-09   1.1e-05      15      75 ..     170     241 ..     156     242 .. 0.65

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 4.8e-09
                     EEEEEEEEES.....TCTEEEEE-GGGTTSSHHHHHHHHTT...SEEEEE.EEEE....THH.HHHHHHHHTTEE CS
  Acetyltransf_7  15 vGfialslld.....aeitrlaVdpeyrgkGiGraLleaae...kgiile.qlel....nae.kaikfYeklGFe 75 
                     v  +++++++     a ++++ ++p +r++G+G a ++a +    g + + +++l    + + +a+++Y+ lGF+
      KIR62313.1 170 VAVAGVHVYSptwqvAALGNVTTHPGFRRRGLGAAVVAALCgrlVG-E-VeHVTLnvrgD-NvAALRLYRGLGFT 241
                     33333333334447777888*****************983232334.2.23555533433.2599*********7 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   9.4e-09   2.1e-05      32     111 ..     159     245 ..     145     249 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 9.4e-09
  Acetyltransf_10  32 lllvaeeggkivGvielrdgs......hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnasp.yavpfYeklGFkavge 111
                       ++++ +gg +v v+++   s       ++ +  +p +r++G+g+a + a++ ++  +  +++l+v+ ++ +a ++Y+ lGF+av e
       KIR62313.1 159 RYVGVRRGGALVAVAGVHVYSptwqvaALGNVTTHPGFRRRGLGAAVVAALCGRLVGEVEHVTLNVRGDNvAALRLYRGLGFTAVAE 245
                      56899999999999988777777888899999**********************86665555*********************9865 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   1.6e-07   0.00036       5     125 ..     129     240 ..     125     243 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.6e-07
                     E-GGGHHHHHHHHHHHTT----H..HHHHHHHHHHTTSEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHH CS
  Acetyltransf_9   5 lteedldevlellkyaFqdeespleeireyfrklleesrvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLlaral 99 
                     lt +dl+e   l ++a+  +  +         ++l+ +r++g++++g lv+++++     +v+  t+++a+++ V+++p  r+rg+  + +a++ 
      KIR62313.1 129 LTVADLPELRGLYAAAYPGNWFD--------ARMLDTGRYVGVRRGGALVAVAGV-----HVYSPTWQVAALGNVTTHPGFRRRGLGAAVVAALC 210
                     55555566666655555554444........5789*****************986.....688899********************777777776 PP

                     HHHHHTT--EEEE--....SSHHHHHTTT- CS
  Acetyltransf_9 100 eemreegqplsllfP....ssipiYrrfGy 125
                     +++  e + ++l +     ++ ++Yr +G+
      KIR62313.1 211 GRLVGEVEHVTLNVRgdnvAALRLYRGLGF 240
                     666655555555444444455555555555 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.4e-06    0.0032     185     242 ..     189     248 ..     153     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.4e-06
  GNAT_acetyltran 185 eidTkedyrrkgLAtivaaalileclkrglyPsWDaa..neaSvaLaekLGYefekeYkv 242
                      ++ T++ +rr+gL  +v aal+ + + +        +  n a+++L++ LG++ + eY  
       KIR62313.1 189 NVTTHPGFRRRGLGAAVVAALCGRLVGEVEHVTLNVRgdNVAALRLYRGLGFTAVAEYGE 248
                      79************************9988888887777*******************75 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   9.6e-06     0.022      57     138 .]     162     241 ..     126     241 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.6e-06
  Acetyltransf_3  57 aivlkdtgv.iGsvglrdleeedeeaelgymlaps.fwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                      +  +++ + + ++g++ +++  + a lg +  ++ f+++G++  +v+al+  +    ++e++  ++  +N a  r+++ lGf+
      KIR62313.1 162 GV-RRGG-AlVAVAGVHVYSPTWQVAALGNVTTHPgFRRRGLGAAVVAALCGRLVG--EVEHVTLNVRGDNVAALRLYRGLGFT 241
                     33.4555.5589999998888766699997776555******************53..46***********************6 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.5e-05       0.1      89     142 ..     194     245 ..     185     247 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.5e-05
                     HHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEE CS
  Acetyltransf_8  89 aeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekeke 142
                     + +r++gl++a++ al+ +l+ +  +++v +  + +N +a+rl++ +Gf+ + e
      KIR62313.1 194 PGFRRRGLGAAVVAALCGRLVGE--VEHVTLNVRGDNVAALRLYRGLGFTAVAE 245
                     7799*****************98..************************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1836.66
//
Query:       KIR62314.1  [L=116]
Description: ArsR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-21   76.0   0.0    1.8e-21   75.7   0.0    1.1  1  HxlR          HxlR-like helix-turn-helix
    0.00015   21.7   0.6    0.00025   21.0   0.1    1.6  2  HTH_20        Helix-turn-helix domain
  ------ inclusion threshold ------
       0.12   12.4   0.0       0.17   11.9   0.0    1.2  1  PadR          Transcriptional regulator PadR-like family
       0.18   11.9   0.0       0.22   11.6   0.0    1.1  1  Replic_Relax  Replication-relaxation


Domain annotation for each model (and alignments):
>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.0   4.1e-25   1.8e-21       2      89 ..      25     112 ..      24     114 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 4.1e-25
                 HHSTTHHHHHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHHHHHHHHHHC CS
        HxlR   2 iggkWkllilvellkgkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelkkwgeeylee 89 
                 +g++W++++l +l  g+  f el+ralp+is+++L+ rL eL + gl++r+v +  P+ v Y+lte+G ++ p+l++l+ w++e+l++
  KIR62314.1  25 LGKRWNGVLLGTLGLGPAGFAELARALPGISESVLSDRLGELVRVGLVSRTVREGPPVGVSYELTERGAAVLPALDALARWAHENLPA 112
                 89*********************************************************************************99876 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   5.6e-08   0.00025      24      57 ..      41      75 ..      32      80 .. 0.84
   2 ?   -2.2   0.1         1   4.5e+03      21      36 ..      90     105 ..      87     110 .. 0.58

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 5.6e-08
                TB-HHHHHHHH.TS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 24 gltaselaerl.dlskntlsyHLrvLeeagLvevv 57
                ++ ++ela++l ++s + ls++L +L+++gLv ++
  KIR62314.1 41 PAGFAELARALpGISESVLSDRLGELVRVGLVSRT 75
                66679******99******************9764 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1
                 TCTTB-HHHHHHHHTS CS
      HTH_20  21 raegltaselaerldl 36 
                 +++++ +++l+++ ++
  KIR62314.1  90 ERGAAVLPALDALARW 105
                 5556666666666555 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.7e-05      0.17      29      73 ..      54      96 ..      43      98 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.7e-05
                TTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHH CS
        PadR 29 lseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrel 73
                +se+ l + L +L + glv+++ +e    p    Y+lT++G + l
  KIR62314.1 54 ISESVLSDRLGELVRVGLVSRTVRE--GPPVGVSYELTERGAAVL 96
                788889999*************886..5677789*******9876 PP

>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.9e-05      0.22      26      74 ..      58     101 ..      42     113 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.9e-05
  Replic_Relax  26 tarrrLarLrelgllsrlrkrvggarggsepyvYaLtpkGarllaaqra 74 
                    +++rL +L + gl+sr+ ++  g      +  Y Lt+ Ga++l+a +a
    KIR62314.1  58 VLSDRLGELVRVGLVSRTVRE--GPPV---GVSYELTERGAAVLPALDA 101
                   5789*************6666..2333...578***********77665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.36s 00:00:00.91 Elapsed: 00:00:00.56
# Mc/sec: 618.45
//
Query:       KIR62315.1  [L=294]
Description: methenyltetrahydrofolate cyclohydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-45  152.3   1.7    2.1e-44  150.7   0.4    2.1  2  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
    3.9e-28   98.0   0.0    5.3e-28   97.6   0.0    1.2  1  THF_DHG_CYH    Tetrahydrofolate dehydrogenase/cyclohydrolase,


Domain annotation for each model (and alignments):
>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.043   3.8e+02     107     137 ..       8      43 ..       6      47 .. 0.79
   2 !  150.7   0.4   2.3e-48   2.1e-44       1     158 [.     131     290 ..     131     292 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.043
                    ---EEC.....-TTEEE-SB-HHHHCTTSSEE--TT CS
  THF_DHG_CYH_C 107 vGinrv.....ekgklvGDvdfeevkevasaitPvp 137
                    vG+ r+       ++++G+v+ e v+  a+ +tP  
     KIR62315.1   8 VGVARLlpggpVADRVLGEVAAEVVALRAAGVTPSL 43 
                    5666666665557899*****************975 PP

  == domain 2  score: 150.7 bits;  conditional E-value: 2.3e-48
                    SHHHHHHHHTT--SS--HHHHHHHHHHHHCT---TT-EEEEE---TTTHHHHHHHHHCT....T-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT- CS
  THF_DHG_CYH_C   1 hplnlgrlvkgeeallpctpkgvvellketgielegkkvvvvGrsnivgkplallLlek....natVtvchsktkdlaeitreadivvvavGkpel 92 
                    hp+nlgrl++g +  +pctp+g+  ll+ +g++++g++vvv+Gr+ ++g+pla+lL++k    na Vtv+h+   d +++ r+a+++v+a+G+p++
     KIR62315.1 131 HPVNLGRLALGLPGPVPCTPAGIEALLAFHGVSVAGREVVVLGRGATLGRPLAMLLAQKrsttNAAVTVVHTGVADWPRFARRAEVLVAAAGVPGI 226
                    89********************************************************88888********************************* PP

                    B-GGGS-TT-EEEE---EEC-TTEEE-SB-HHHHCTTSSEE--TTTSCHHHHHHHHHHHHHHHHHC CS
  THF_DHG_CYH_C  93 ikaemvkegavviDvGinrvekgklvGDvdfeevkevasaitPvpgGVGpmTvamllkntleaakr 158
                    ++ e+v++gavv+  G+    +++l+ Dvd  ++++va+aitP  gGVGp Tvaml++n + a++r
     KIR62315.1 227 VRPEHVRPGAVVVGGGVRYA-GRRLLPDVD-PSCARVAGAITPRVGGVGPTTVAMLFRNAVGAVRR 290
                    *****************999.9********.99****************************99887 PP

>> THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   5.9e-32   5.3e-28       2     116 .]      14     128 ..      13     128 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 5.9e-32
                  --HHHHHHHHHHHHHHHHHHHHHHT---EEEEEEES--HHHHHHHHHHHHHHHHTT-EEEEEEE-TT--HHHHHHHHHHHHH-TT--EEEE-SS-STT CS
  THF_DHG_CYH   2 ldGkalakeireelkeeveklkekgvkpkLavilvgddpasevYvrnkkkaceevGieseliklpedvseeellklieelneddsvdGilvqlPlpkh 99 
                  l G  +a+++  e+++ev +l++ gv+p+La++lvgdd as+ Y+r k+++++e+G+ s +++lp+++s+ +l ++ie++n+d  v+G+lvq+P+p  
   KIR62315.1  14 LPGGPVADRVLGEVAAEVVALRAAGVTPSLATVLVGDDDASAGYIRIKQRQAAELGFVSPHVRLPASASQVDLHRVIEDFNADRGVHGVLVQHPVPGG 111
                  678899*****************9************************************************************************** PP

                  S-HHHHHCCS-GGGBTT CS
  THF_DHG_CYH 100 idekaileaispeKDVD 116
                  +d  ++l++++p+KDVD
   KIR62315.1 112 LDYGRALQVLDPDKDVD 128
                  ****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.55
# Mc/sec: 1603.19
//
Query:       KIR62316.1  [L=97]
Description: conjugal transfer protein TraR [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-12   47.4   5.1    2.2e-12   46.7   5.1    1.4  1  zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
     0.0021   17.9   0.6     0.0028   17.5   0.6    1.2  1  TC1           Thyroid cancer protein 1


Domain annotation for each model (and alignments):
>> zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   5.1   2.5e-16   2.2e-12       1      33 [.      62      94 ..      62      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 2.5e-16
  zf-dskA_traR  1 giygsCeeCGEpIpeaRlralPgarlCveCqek 33
                  g+yg+Ce+C   Ip +Rl+++P+ar+Cv+Cqek
    KIR62316.1 62 GGYGVCERCERAIPVQRLEVVPYARFCVPCQEK 94
                  78******************************8 PP

>> TC1  Thyroid cancer protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.6   3.2e-07    0.0028      33      74 ..      16      58 ..       9      60 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.2e-07
         TC1 33 dvnldqlqrLFkksGDk.kAeeRariifaesqdeeelarALma 74
                + +l++l  L   +GD  +A  Ra +++a++++ e++a+AL++
  KIR62316.1 16 TARLRELTELNADTGDPgEAHTRAALVVAARRGVEQVADALRR 58
                6789999*********648**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.30s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 645.74
//
Query:       KIR62317.1  [L=237]
Description: hypothetical protein TK50_31440 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.045   12.2   3.8      0.059   11.8   3.8    1.2  1  Neisseria_TspB  Neisseria meningitidis TspB protein
        2.5    8.6   7.5        4.6    7.7   2.9    2.4  2  DUF4140         N-terminal domain of unknown function (DUF414


Domain annotation for each model (and alignments):
>> Neisseria_TspB  Neisseria meningitidis TspB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.8   6.6e-06     0.059     297     364 ..      48     115 ..      34     151 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.6e-06
  Neisseria_TspB 297 tdrngnpvqvvatfgrdaqgnttvdvqviprpdltpasaeapnaqplpevspaenpannpdpdenpgt 364
                     td       vv  fgrd    + +dv v pr     a+a + +aqp pe  p  +p    d    p  
      KIR62317.1  48 TDPAVSDEFVVVRFGRDELPFSPADVAVAPRGAGRKAAAVSVEAQPEPEPEPVVEPEFVLDTPRVPAQ 115
                     555556667999****************************************9999776666555554 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2     0.018   1.6e+02      43      86 ..      79     131 ..      64     142 .. 0.58
   2 ?    7.7   2.9   0.00051       4.6      61      92 ..     203     234 ..     181     236 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.018
     DUF4140  43 gaga.atildvqvervpnreaeee........elkalraeleeledelaaled 86 
                 gag+ a   +v+ + +p++e++ e        ++ a r+e  ++e+e++ +e+
  KIR62317.1  79 GAGRkAAAVSVEAQPEPEPEPVVEpefvldtpRVPAQRREEPRVEQEQELAEA 131
                 55555666666666666666666687777776344444444444444333333 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00051
     DUF4140  61 eaeeeelkalraeleeledelaaledelaaae 92 
                 ++ ++e ++++++ e+l++ela++e++la ++
  KIR62317.1 203 QILAAERAEAEQQAEKLRAELAEIEARLAELR 234
                 33333577777777777777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1245  (0.0694406); expected 358.6 (0.02)
Passed bias filter:                      752  (0.0419432); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 1625.43
//
Query:       KIR62318.1  [L=218]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-12   47.0   0.8    3.8e-12   45.8   0.8    1.7  1  TetR_N      Bacterial regulatory proteins, tetR family
    5.9e-05   23.8   9.3    5.9e-05   23.8   9.3    2.8  2  TetR_C_15   Tetracyclin repressor-like, C-terminal domain
    0.00097   19.4   0.4     0.0087   16.3   0.0    2.4  2  TetR_C_24   Tetracyclin repressor-like, C-terminal domain
     0.0075   16.3   0.0      0.014   15.5   0.0    1.5  1  TetR_C_29   Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
      0.046   13.5   1.6      0.093   12.5   0.2    2.1  2  LacI        Bacterial regulatory proteins, lacI family
      0.046   13.9   0.5      0.095   12.9   0.5    1.5  1  LigT_PEase  LigT like Phosphoesterase
       0.37   11.4   4.3       0.48   11.1   0.1    2.6  2  HTH_32      Homeodomain-like domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.8   1.5e-15   3.8e-12       2      47 .]      22      67 ..      21      67 .. 0.97

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 1.5e-15
                HHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  2 ldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                l aA +lfa rG+da+++r++A++AGv  +++ ++ ++K++L++a+
  KIR62318.1 22 LTAATALFAARGFDAVGLRQVAAAAGVDVATVSHHTGTKAQLYDAC 67
                89*****************************************986 PP

>> TetR_C_15  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   3.3      0.94   2.4e+03      32      73 ..       6      48 ..       3      87 .. 0.70
   2 !   23.8   9.3   2.3e-08   5.9e-05       5      99 ..     100     196 ..      97     205 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.94
   TetR_C_15 32 pslgelelvealeqriaealaalLarrrpe.lppedlelaafv 73
                p  ++  ++++ ++ + +a++al+a+r  + +  ++++ aa v
  KIR62318.1  6 PGRPRRSESRDTREVVLTAATALFAARGFDaVGLRQVAAAAGV 48
                5566666777888888888888888886440444444444444 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 2.3e-08
   TetR_C_15   5 aldalvdallaahrenpalrrvlleeapslgel.elvealeqriaealaalLarrrp..elppedlelaafvaveaveallhlaleedp.adrealiae 99 
                 al  lvd ++++ +e+p+  +++l+ + ++++  +l+e++++ + e++++lL+++++  +l++++++++++ +v av+a + +++++   a  ++ ++e
  KIR62318.1 100 ALHDLVDVFVDFLQEHPQTTALWLRRWLEPHRHaDLDERYSAPLYELVEQLLRAAAAagALVEPTPHITVRSLVWAVHAHVVALAADAAaA--QRERQE 196
                 67789***********************************************98765227999***************9987766666643..333344 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.3   7.7e+02      25      46 ..      68      89 ..      55      94 .. 0.80
   2 !   16.3   0.0   3.4e-06    0.0087       8      85 ..     101     177 ..      92     181 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.3
                HHHHHHHHGGGS-HHHHHHHHH CS
   TetR_C_24 25 eaavllrelraLspehreeira 46
                 a+v++ e++aL+++ r+++ a
  KIR62318.1 68 FARVFVAERDALQAATRAAHDA 89
                6889999999999999988765 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 3.4e-06
                 HHHHHHHHHHHHHHTHHHHHHHHHHGGGS-HHHHHHHHHHHHH.HHHHHHHHHHHHHHTTSB-SS-HHHHHHHHHHHHH CS
   TetR_C_24   8 LralvrahveviaeereeaavllrelraLspehreeiralrre.yerllrdlieeGvaagefedldpklaalailgmln 85 
                 L+ lv  +v+++ e+++++a+ lr    L+p +++ + ++  + + +l+++l+++++aag + ++ p++++++++ +++
  KIR62318.1 101 LHDLVDVFVDFLQEHPQTTALWLRR--WLEPHRHADLDERYSApLYELVEQLLRAAAAAGALVEPTPHITVRSLVWAVH 177
                 8999*****************9976..7999999999998765499**************************9987765 PP

>> TetR_C_29  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.5e-06     0.014       4      72 ..     100     165 ..      98     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.5e-06
                 HHHHHHHHHHHHHHH-HHHHHHHHHHHHS-TT--TTS--SS-.THHHHHHHHHHHHHHHHTTSS-SS-- CS
   TetR_C_29   4 alrrlveftfdyhaanpefvrLvsiEnlhrgrhlkksesirelnspliekleeilerGqaagvFrpgvd 72 
                 al  lv++++d+++++p+  +L     l  +rh+   e   ++++pl e +e++l+  +aag++ +   
  KIR62318.1 100 ALHDLVDVFVDFLQEHPQTTALWLRRWLEPHRHADLDE---RYSAPLYELVEQLLRAAAAAGALVEPTP 165
                 899*******************************5555...5567******************965433 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.48   1.2e+03      27      39 ..      14      26 ..      10      28 .. 0.84
   2 ?   12.5   0.2   3.6e-05     0.093       2      18 ..      39      55 ..      38      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.48
                THHHHHHHHHHHH CS
        LacI 27 seetrerVeaame 39
                s +tre V+ a+ 
  KIR62318.1 14 SRDTREVVLTAAT 26
                779*****99985 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.6e-05
                HHHHHHHCTS-HHHHHH CS
        LacI  2 ikDVArlAGVSkaTVSr 18
                ++ VA +AGV +aTVS+
  KIR62318.1 39 LRQVAAAAGVDVATVSH 55
                678*************8 PP

>> LigT_PEase  LigT like Phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.5   3.7e-05     0.095       5      68 ..     137     198 ..     134     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHHHHHHHHHHCCTTEEETSGGGSEEEEEEEEEESHHHHHHHHHHHHHHHHTSBEEE CS
  LigT_PEase   5 eeiaeelarlaaeleralaklglkpvrpfnpHiTLaflgevdeekvpellealaeiasgaepfe 68 
                 e  +  l++l+++l ra+a++g+ ++   +pHiT++ l       v +l + +a + +++++f+
  KIR62318.1 137 ERYSAPLYELVEQLLRAAAAAGALVE--PTPHITVRSLVWAVHAHVVALAADAAAAQRERQEFR 198
                 5566789***********99999988..9*******9976667777778888888888888876 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00019      0.48      19      68 ..       2      57 ..       1      60 [. 0.73
   2 ?    0.8   0.7      0.29   7.5e+02       5      58 ..     122     128 ..     102     181 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00019
      HTH_32 19 drprrgrprk.lsdevrariiallreep.......rWsprqlaarlaeregvk...vShst 68
                +r+r+grpr+  s ++r+ ++  + ++        + ++rq+aa+     gv+   vSh t
  KIR62318.1  2 PRRRPGRPRRsESRDTREVVLTAA-TALfaargfdAVGLRQVAAAA----GVDvatVSHHT 57
                79999****637777777777777.554667788888*******88....22234599887 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.29
      HTH_32   5 wlkRyneeGlegLkdrprrgrprklsdevrariiallreeprWsprqlaarlae 58 
                 wl+R                                              +l e
  KIR62318.1 122 WLRR----------------------------------------------WL-E 128
                 4444..............................................43.1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1441.34
//
Query:       KIR62319.1  [L=113]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-43  146.7   0.2    3.4e-43  146.5   0.2    1.0  1  RbpA      RNA polymerase-binding protein


Domain annotation for each model (and alignments):
>> RbpA  RNA polymerase-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.5   0.2   1.9e-47   3.4e-43       1     104 []       4     107 ..       4     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 146.5 bits;  conditional E-value: 1.9e-47
        RbpA   1 ralrGsrlGaksleedervelaprqevsYacakghetevtfaaeaevPetwecrrcGkeakl.dgeepeeekkekpyrtHldmlkERRseeeleelLae 98 
                 r+lrGsrlGa s+e+d+++elaprq+ +Y cakgh++ev+fa +aevP+twec+  G+ a+l dg+ep e+kk+kp+rtH+dml+ERRs++ele++Lae
  KIR62319.1   4 RMLRGSRLGAVSYESDRNTELAPRQTREYLCAKGHQFEVPFAVDAEVPTTWECKFDGSVARLvDGTEP-EQKKAKPPRTHWDMLLERRSIAELEDILAE 101
                 78************************************************************999998.****************************** PP

        RbpA  99 rLellr 104
                 rL+++r
  KIR62319.1 102 RLQEVR 107
                 ***987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.46
# Mc/sec: 739.43
//
Query:       KIR62320.1  [L=262]
Description: dolichol-phosphate mannosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-29  100.7   0.0    1.1e-28  100.2   0.0    1.2  1  Glycos_transf_2  Glycosyl transferase family 2
    2.9e-10   40.4   0.6    3.4e-10   40.2   0.6    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
  ------ inclusion threshold ------
      0.044   14.2   0.8       0.35   11.2   0.3    2.4  2  Lipase_GDSL_2    GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   0.0   1.8e-32   1.1e-28       2     167 ..      15     177 ..      14     180 .. 0.97

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 1.8e-32
                      EEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SS...EEEEEESSEEE CS
  Glycos_transf_2   2 vviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgd...yilflDaDdep 92 
                      vviptyNe++++   +++++a   +p+++++v+DD+S+D+t  ++++la+ d+rv+v++r  ++G+++a+ ag+++a+ +    ++ +DaD  +
       KIR62320.1  15 VVIPTYNEADNVTSIVARVRAA--APEVDVLVADDASPDGTGVLADALAACDGRVHVLHRAGKEGLGAAYLAGFAWARERgydAVVEMDADGSH 106
                      9********************9..*********************************************************99*********** PP

                      -TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHH CS
  Glycos_transf_2  93 dpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrreale 167
                      +p++l++l++a+ +  advv+g+r  ++     ++ ++     +r+ +   +  l+  +++ +g+++++r  +l+
       KIR62320.1 107 APEDLPRLLAAAAD--ADVVIGSRWCRGARVVGWPLRRL--LLSRCGNLYARMALGMPVTDATGGYRVYRLAVLD 177
                      *************9..889********999999999998..89***************************99986 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.6   5.6e-14   3.4e-10       3     175 ..      12     179 ..       9     247 .. 0.74

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 5.6e-14
  Glyco_tranf_2_3   3 dlavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravk...sdlvll 93 
                      +++v++pt+ne+d ++++++ + a + p+v+v v +d s ++t   a++l aa+++ rv+v+++a + g      a+  ++  ++   +d v+ 
       KIR62320.1  12 RVLVVIPTYNEADNVTSIVARVRA-AAPEVDVLVADDASPDGTGVLADAL-AACDG-RVHVLHRAGKEG---LGAAYLAGFAWARergYDAVVE 99 
                      699******************998.58*********99999998888875.67877.99***8876555...555678999988878899**** PP

  Glyco_tranf_2_3  94 vDdDtvvePdtlkrllqffltpkvgavgtpvfllnrstlvsalgalefaerhlrflaarralgvltlnGsgslirrevlkel 175
                      +D+D    P+ l+rll+++  +++++v ++++++  + +  +l +l + +      ++++   v+  +G   ++r +vl++ 
       KIR62320.1 100 MDADGSHAPEDLPRLLAAA--ADADVVIGSRWCRGARVVGWPLRRLLLSRCGNLYARMALGMPVTDATGGYRVYRLAVLDAV 179
                      ******************8..8899999999999777664445555444444433334433345555566666666666666 PP

>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   5.9e-05      0.35      84     171 ..      20     106 ..       8     107 .. 0.71
   2 ?    1.8   0.0     0.047   2.8e+02      14      51 ..     103     138 ..      92     178 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.9e-05
                    HHHH..HHHHHHHHCCC...GEEECEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHHCT-EEE-HHHHHHHCCCCCGGBBTTS.SS CS
  Lipase_GDSL_2  84 aaandnleelidalraaapgarilvlgplpptpeaaadarelnaviaaynealrevaaeegvpfvDlhdaladsgerladlladdglH 171
                    + ++dn++++++++raaap++ +lv+    p + +   a+ l+a   ++  + r+  +  g++++  + +++++g++ +  ++ dg H
     KIR62320.1  20 YNEADNVTSIVARVRAAAPEVDVLVADDASPDGTG-VLADALAACDGRVHVLHRAGKEGLGAAYLAGFAWARERGYDAVVEMDADGSH 106
                    444558******************44444444444.4444446666666666666666699999999999999998887777777655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.047
                    CCHCHHCCCCCCCHHHTT-EEEEE..EEHCCH-H..HHH CS
  Lipase_GDSL_2  14 gggrsypaylarllaarlgldvvnn.lgvsGattallrl 51 
                    +g ++  ++ +rllaa+ ++dvv   + + Ga++    +
     KIR62320.1 103 DGSHAPEDL-PRLLAAAADADVVIGsRWCRGARV--VGW 138
                    566667777.999999998888875666888888..333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1822.79
//
Query:       KIR62321.1  [L=251]
Description: lysine 2,3-aminomutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-33  114.1   0.1    4.8e-33  113.4   0.1    1.4  1  OAM_dimer    Dimerisation domain of d-ornithine 4,5-aminomuta
    5.7e-21   74.8   0.3    8.2e-21   74.3   0.3    1.2  1  B12-binding  B12 binding domain


Domain annotation for each model (and alignments):
>> OAM_dimer  Dimerisation domain of d-ornithine 4,5-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.1   5.4e-37   4.8e-33       1      78 []       6      83 ..       6      83 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 5.4e-37
                EE---SSSTT--EEEEEEEESS-SCHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEEEEEEE--S-EEGGG----- CS
   OAM_dimer  1 likPygdtlnDGvvqlsftLPvpaeeeAeeAAlelakkmGledpeVvhkeelheeftffvvyGkvshsvdlselkvpe 78
                +++Pygdt++DG+vq+sftLPvp++++Ae AA++la+kmGl++++ vh+++++++ftffvvyG+v+h vdl +++v+e
  KIR62321.1  6 VVRPYGDTTGDGMVQVSFTLPVPHDKRAEGAAVQLANKMGLDPAMLVHARQMGDGFTFFVVYGRVNHLVDLAKVQVVE 83
                59*************************************************************************975 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.3   9.2e-25   8.2e-21       2     117 ..     107     232 ..     106     236 .. 0.95

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 9.2e-25
  B12-binding   2 kvllatvggdlhplGlavlaaalrdagf.........eVqllganvenedivaairaekpdvvglSalltsqleavkelvel......lkrirprvkv 84 
                  +v++a++g+d+h++G++++ +++  ag          +V++lga+v+++++v+a+r+e++d+v++S+++t++ ++ +++ e+      +  +++r  +
   KIR62321.1 107 SVVGACIGTDAHTVGIDAILNVKGIAGEkgleyyrelKVTNLGAQVSVPELVEAARRERADAVLVSQVVTQRDAHLHNTREMsaafreAMPAGKRPLL 204
                  699******************************************************************************9999999999999**** PP

  B12-binding  85 vvGGahpsldpeetleaklgiddvvvgegedal 117
                  +vGG  p++d+ +t e  lg +d ++g g+++ 
   KIR62321.1 205 IVGG--PRFDESMTGE--LG-VDRIFGRGTTPG 232
                  ****..89*****887..**.999*****9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1927.93
//
Query:       KIR62322.1  [L=523]
Description: amidohydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-72  244.3  14.8    4.1e-72  244.1  14.8    1.0  1  Amidohydro_3  Amidohydrolase family
    3.1e-07   30.0   0.0     0.0012   18.3   0.0    2.3  2  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.1  14.8   4.6e-76   4.1e-72       1     473 []      45     518 ..      45     518 .. 0.93

  Alignments for each domain:
  == domain 1  score: 244.1 bits;  conditional E-value: 4.6e-76
  Amidohydro_3   1 eviDakGrlvlPGFvDsHtHlagggvnlrllrlpdarvtslegvltavrdqagttpkgrwivgeGwdeaqfaeerfpyalaeldevledapvllaal 97 
                   +v+D+ G+lv+P+FvD+H H + +g++l++l+l++  v+s+ ++l+av   a+  p + +++g+Gwde+ + +   p   a++ +++  + v+l+++
    KIR62322.1  45 RVVDLAGALVTPAFVDAHVHATDTGLALSGLDLSG--VRSAGQLLDAVSVFAAGLPGDAVVLGHGWDESGWGDVVLP-DAAAVGRAAGGRRVYLSQA 138
                   69*********************************..*****************9999999****************.889999999********** PP

  Amidohydro_3  98 dtHaavrnsaaldlagiteatpdpaggeilrdangegatgllregafhlvldla.pl.areaeaaavaaalaalasyGitsv.eagggnvsslddle 191
                   + H+a+++ a+l+            + e++  a    a g lr +a+h v+++a  + +r++  aa ++al+++as Gi +v e+gg++ s ++d+ 
    KIR62322.1 139 SIHSALVSEALLAA-----------CPEVVSAAGFD-ASGWLRRDAHHVVRAAAfGSvTRAQRVAAQRRALEHAASLGIAAVhECGGPEISDEEDFT 223
                   *************8...........66666665555.******************666*************************************** PP

  Amidohydro_3 192 plfeltaeeklplrviikelldaaerlglpls...pgseeltigavklfadgvlgsrtalltepyf......tgwpdfedealaelvaaadergldv 279
                    l++++ ++      +     ++   +g+ l+       +    + +lfadg+lgsrta+++  y+      +g + ++ e+++++v  + ++g++ 
    KIR62322.1 224 GLLGISGRG------V----PEVYGYWGELLGaerARELGAVGAGGDLFADGALGSRTAHVSAAYLdgepgaCGHGYVSAEQVRDHVLDCVAHGVQG 310
                   ********9......3....3444444444443333344445559999999******************999999999999**************** PP

  Amidohydro_3 280 aihaigdaavddvldafeaaaekngnqdrr....rlehaegvtesqiervaalqvaagvqpvfnf....edelldsrlgperargstpvkellnagv 368
                   ++haigdaa+  vl++f+ aae+ g++  r    r+ehae ++ + i+ + + ++ a++qp+f+        +++ rlg  r   s+p++++ + gv
    KIR62322.1 311 GFHAIGDAAIGTVLAGFAGAAERVGVERLRagrhRVEHAELMSRRLIAGFVEFGIVASMQPAFDRlwggAGRMYEARLGLSRSLESNPMGAMHSVGV 407
                   ***************************9999999*****************************99****999************************* PP

  Amidohydro_3 369 kvalgsDapvgpfdpwprigaavmrktrrggevlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvld........adpldvdppel 457
                    +a+gsD+pv+p+dpw +++aa  + +        p +++s+++a+a++Trg+++a++l+ + G L+ Ga+A ++v+d           l++++pel
    KIR62322.1 408 ALAFGSDSPVTPLDPWGSVRAAAAHHN--------PVQRMSVRAAFAAHTRGGWRAVHLDNE-GVLALGAPATFAVWDspagvergLPVLQAEDPEL 495
                   ***********************9999........99************************9.*******************999999999999999 PP

  Amidohydro_3 458 aear.......vrltvvdGrvvy 473
                   + a+       +r+tv +G v+y
    KIR62322.1 496 RGAGdptplpvCRATVLRGDVIY 518
                   9999****************998 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   6.6e-05      0.59       1      16 [.      53      68 ..      53      96 .. 0.86
   2 !   18.3   0.0   1.3e-07    0.0012     234     319 ..     400     477 ..     388     502 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 6.6e-05
                  EEEE-EEEEEEECETT CS
  Amidohydro_1  1 ivlPGlIDaHvHleqs 16
                  +v+P+++DaHvH+ ++
    KIR62322.1 53 LVTPAFVDAHVHATDT 68
                  59***********876 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.3e-07
                   HHHHH.TSCEEEEEECTTSSCCG.GHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC CS
  Amidohydro_1 234 kalde.GvkvglgtDgaasgnsl.nlleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdl 319
                    a+++ Gv  ++g+D   s  ++ + + ++r a+  ++      + + +s+  a+++ T +g +a+ ld + G ++ G +A ++v+d 
    KIR62322.1 400 GAMHSvGVALAFGSD---SPVTPlDPWGSVRAAAAHHN------PVQRMSVRAAFAAHTRGGWRAVHLD-NEGVLALGAPATFAVWDS 477
                   577888*********...44444477888999994444......6777********************6.****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3663.03
//
Query:       KIR62323.1  [L=270]
Description: peptidase M23 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-18   65.8   0.9    4.6e-18   65.2   0.9    1.3  1  Peptidase_M23   Peptidase family M23
    1.3e-05   25.3   0.9      0.041   14.1   0.0    3.4  3  PG_binding_3    Predicted Peptidoglycan domain
    3.4e-05   23.9   0.1       0.02   15.1   0.1    3.4  3  PG_binding_1    Putative peptidoglycan binding domain
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.17   11.9   0.0    1.3  1  Apocytochr_F_C  Apocytochrome F, C-terminal


Domain annotation for each model (and alignments):
>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.9     1e-21   4.6e-18       4      96 .]      53     152 ..      50     152 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 1e-21
                    SSEEEEETTT-EEEESSSEEEEEEEEETTTEEEEEEEECTCEEEEEEEESEESS-TTEEE-TTCEEEEEB.STSS.....CSSSEEEEEEE.ETTE CS
  Peptidase_M23   4 kGidiaapkgtpVlAaadGtVvfagkkegyGnvviidhgdgystlyahlskisvkegqkVkaGqvIGtvg.stgr.....stgphLhfeir.kngk 92 
                     Gid+ +  gt+  A  +Gt+ ++ ++++ G +v i h+dgy + y+hls++ ++ g  V+aG+v+G++g + g+     stgphLh+++    g 
     KIR62323.1  53 GGIDFGMGVGTNLPACGAGTIQNIPNNGTGGHTVTIHHADGYRSQYMHLSQFLLSDGTAVAAGTVVGRSGgAVGApgsgsSTGPHLHWHMInPSGV 148
                    69**********************999777***************************************9555535556588*******9636888 PP

                    EE-C CS
  Peptidase_M23  93 avdp 96 
                    ++dp
     KIR62323.1 149 RIDP 152
                    8887 PP

>> PG_binding_3  Predicted Peptidoglycan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1    0.0002      0.88       6      34 ..     184     212 ..     180     216 .. 0.82
   2 !   14.1   0.0   9.2e-06     0.041       4      32 ..     208     236 ..     205     240 .. 0.89
   3 !    7.3   0.0    0.0012       5.4       6      27 ..     235     256 ..     232     267 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0002
                   HHHHH.T.....S---S---HHHHHHH... CS
  PG_binding_3   6 lQriL.gklgydvkvDGiiGpkTlaAvear 34 
                   +Q +L    gy+  +DG+ G +T aA++ r
    KIR62323.1 184 MQNWLrITSGYTGPIDGVPGVNTYAALQ-R 212
                   7999953579*****************5.3 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 9.2e-06
                   HHHHHHHT.....S---S---HHHHHHH. CS
  PG_binding_3   4 vilQriLgklgydvkvDGiiGpkTlaAve 32 
                   + lQr+++  gy+  +DG+ G +T +Av+
    KIR62323.1 208 AALQRAMRGYGYTGPIDGVPGVNTWKAVQ 236
                   679*************************5 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0012
                   HHHHHT.....S---S---HHH CS
  PG_binding_3   6 lQriLgklgydvkvDGiiGpkT 27 
                    Qr++   gy+  vDG++Gp+ 
    KIR62323.1 235 VQRLASGWGYTGPVDGVMGPNS 256
                   7****99************975 PP

>> PG_binding_1  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.7   3.1e+03      44      57 .]     171     184 ..     170     184 .. 0.79
   2 !   14.0   0.0   9.4e-06     0.042       7      56 ..     183     234 ..     181     235 .. 0.86
   3 !   15.1   0.1   4.4e-06      0.02       7      52 ..     209     255 ..     208     258 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.7
                   T-SSSBSHHHHHHH CS
  PG_binding_1  44 pvtGildpaTlaal 57 
                   +++Gi++p  ++ +
    KIR62323.1 171 EQDGIPGPICYKRM 184
                   68*****9777666 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 9.4e-06
                   HHHHHHHHT.T--.SSSSSB--HHHHHHHHHHHHHTTST..-SSSBSHHHHHH CS
  PG_binding_1   7 elqryLsrl.GylsgpadgtfgpateeaVkefQqffgLp..vtGildpaTlaa 56 
                    +q++L+   Gy+ gp+dg+ g  t +a+++  + +g +   +G+++ +T++a
    KIR62323.1 183 RMQNWLRITsGYT-GPIDGVPGVNTYAALQRAMRGYGYTgpIDGVPGVNTWKA 234
                   5799999986775.999999999999999999999999877999999999987 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 4.4e-06
                   HHHHHHHHTT--.SSSSSB--HHHHHHHHHHHHHTTST..-SSSBSHH CS
  PG_binding_1   7 elqryLsrlGylsgpadgtfgpateeaVkefQqffgLp..vtGildpa 52 
                   +lqr+ + +Gy+ gp+dg+ g  t +aV++  +  g +  v+G+++p+
    KIR62323.1 209 ALQRAMRGYGYT-GPIDGVPGVNTWKAVQRLASGWGYTgpVDGVMGPN 255
                   79*********8.****************9874444433377777776 PP

>> Apocytochr_F_C  Apocytochrome F, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.8e-05      0.17       7      61 ..      67     119 ..      63     131 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.8e-05
                     -SSSEEEEEEEEEESSEEEEEEETSTSEEE-EEEESSS-BS--ST-EE-TT-BSC CS
  Apocytochr_F_C   7 asaaGtiskiekeekggtevtietedgeavvetipaGpelivsegqevkagealt 61 
                     a  aGti++i ++ +gg++vti+++dg    ++     ++++s+g +v+ag+ + 
      KIR62323.1  67 ACGAGTIQNIPNNGTGGHTVTIHHADGYR--SQYMHLSQFLLSDGTAVAAGTVVG 119
                     6779***********************64..455566789999999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2048.11
//
Query:       KIR62324.1  [L=255]
Description: haloacid dehalogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-14   53.8   0.0    1.1e-13   51.9   0.0    1.8  1  Hydrolase       haloacid dehalogenase-like hydrolase
    1.3e-13   51.4   0.0    1.5e-12   47.9   0.0    2.0  2  HAD_2           Haloacid dehalogenase-like hydrolase
    5.4e-05   23.2   0.1    0.00014   21.8   0.1    1.7  1  Hydrolase_like  HAD-hyrolase-like
     0.0019   18.6   1.0     0.0043   17.5   1.0    1.6  1  HAD             haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.059   12.7   3.9       0.08   12.3   0.1    2.3  2  LysR_substrate  LysR substrate binding domain
      0.075   13.2   0.0       0.84    9.8   0.0    2.3  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   3.8e-17   1.1e-13       2     208 ..      29     227 ..      28     228 .. 0.68

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 3.8e-17
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH.......HHHHHHHHHETTTE...HHHHTHHHHHHHHHCHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakar.......sgaltgfatfigrg...ayaigkpewltaldippdlgaai 90 
                 ++v+fD+ GTL + e  +  v++ a +a ++ le    + ++ +l  a           ++al++     +r    ++++g    l++           
  KIR62324.1  29 EAVLFDFHGTLAQVEDPHDWVLAAA-RACGVSLERMRATALADRLLTAGRPGgplparvPPALAELWS--ERDlypHAHRGAYTGLAET---------- 114
                 79**********9996665555555.555555555555555555533333323444444333333333..2332223444444444444.......... PP

                 HHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  91 gsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqg 188
                     ++g +   +   +++ + +a+ + ++p++a ++a+L++ag++v+++++             G d  +da + s++++  kp+p ++ +a+  L++
  KIR62324.1 115 ---VDAGIDGLAD--ALYERVLVAEGWVPYPDTAPTLAALRSAGVKVAVVSNIGFDIRP-FFAAWGlDALVDAFVLSYEVGRCKPDPAIFWRACGMLGV 207
                 ...4444444444..8889999999999***********************66543333.333345445558999************************ PP

                 TGGGEEEEESSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 189 kpeevamVGDgvnDaaalaa 208
                 + e+ +mVGD++ Da a +a
  KIR62324.1 208 DAERALMVGDTAADAGAVRA 227
                 ***************99876 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.09   2.7e+02       1      13 [.      31      43 ..      31      56 .. 0.86
   2 !   47.9   0.0   5.1e-16   1.5e-12      76     176 ..     134     232 ..     103     234 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.09
       HAD_2  1 iiFDlDgTlldte 13
                ++FD+ gTl+  e
  KIR62324.1 31 VLFDFHGTLAQVE 43
                79*******9765 PP

  == domain 2  score: 47.9 bits;  conditional E-value: 5.1e-16
       HAD_2  76 kevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagik 174
                 +   py++   +L  L++ag+k+++v++     ++ ++++ g++ + d  v s +v++ KPdp+++ +a+  l++++e++++vGD+  D  +a +ag+ 
  KIR62324.1 134 EGWVPYPDTAPTLAALRSAGVKVAVVSN-IGFDIRPFFAAWGLDALVDAFVLSYEVGRCKPDPAIFWRACGMLGVDAERALMVGDTAADA-GAVRAGCA 230
                 6788**********************87.67789*******************************************************6.78889988 PP

       HAD_2 175 vi 176
                 v+
  KIR62324.1 231 VL 232
                 76 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   4.8e-08   0.00014       4      45 ..     192     231 ..     190     236 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.8e-08
                     TTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EE CS
  Hydrolase_like   4 KPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwks 45 
                     KP p ++ +a   lg+d e+ lm+GD+ a+D agA +aG+  
      KIR62324.1 192 KPDPAIFWRACGMLGVDAERALMVGDT-AAD-AGAVRAGCAV 231
                     9**************************.999.7999999975 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.0   1.4e-06    0.0043       1     183 [.      31     221 ..      31     226 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.4e-06
         HAD   1 alfDfDgTLldg.dslelllrfllrrgaprlwralreklllal..................frellrldraglaelleallaglseelaaelerfvaev 80 
                 +lfDf gTL +  d+ ++ l + +++g +  ++ +r+++l+++                  +   l ++r+ + ++ + ++ gl+e ++a ++ + ++ 
  KIR62324.1  31 VLFDFHGTLAQVeDPHDWVLAAARACGVS--LERMRATALADRlltagrpggplparvppaL-AELWSERDLYPHAHRGAYTGLAETVDAGIDGLADAL 126
                 79**********77777444444444443..3333333333333455777777786666642.223333455666666699999999999999999666 PP

         HAD  81 irpk......lldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidlee 173
                 +++       + +p+    laa r+aG++v+vvS+ + + ++p+ a+ g d++++  + +  +  g++++++ + ++    a+          g d e+
  KIR62324.1 127 YERVlvaegwVPYPDTAPTLAALRSAGVKVAVVSN-IGFDIRPFFAAWGLDALVDAFVLS--YEVGRCKPDPAIFWR----ACGM-------LGVDAER 211
                 66665555655668*******9***********95.666677888788866666663333..566666666666666....2222.......2445555 PP

         HAD 174 vvayGDspsD 183
                    +GD+ +D
  KIR62324.1 212 ALMVGDTAAD 221
                 6666666666 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   1.1     0.067     2e+02      65     105 ..      55      97 ..      27     162 .. 0.76
   2 ?   12.3   0.1   2.7e-05      0.08      99     157 ..     176     236 ..     167     244 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.067
                     S...CCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGGGCTSE CS
  LysR_substrate  65 p...edsglearpLaeeplvlvaspdhpLargepvsledLadep 105
                         + ++++a+ L  ++l+ + +p+ pL ++ p +l++L  e+
      KIR62324.1  55 AcgvSLERMRATAL-ADRLLTAGRPGGPLPARVPPALAELWSER 97 
                     55555555555555.47899999999999999999999986655 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.7e-05
                     GGGCTSEEEEESTTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEG CS
  LysR_substrate  99 edLadeplilleegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallpr 157
                     ++L d   + +e g +      + +a++  g+++++al v +++a +++v+aG+ + +lp+
      KIR62324.1 176 DALVDAFVLSYEVGRCkpDPAIFWRACGMLGVDAERALMVGDTAADAGAVRAGCAVLVLPE 236
                     5666666777777777778888999***********************************8 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.22   6.6e+02       1      19 [.      31      49 ..      31      64 .. 0.78
   2 ?    9.8   0.0   0.00028      0.84      11      39 ..     134     162 ..     129     172 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.22
                 EEEESTTTSEETTEE-TTH CS
  Hydrolase_6  1 flfDidGvLwrgdkaipga 19
                 +lfD  G+L + +++ + +
   KIR62324.1 31 VLFDFHGTLAQVEDPHDWV 49
                 69*******9988876554 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00028
                  ETTEE-TTHHHHHHHHHHTT-EEEEEE-- CS
  Hydrolase_6  11 rgdkaipgaaealnalraagkpvvllTNn 39 
                  +g  ++p  a +l alr+ag++v++++N 
   KIR62324.1 134 EGWVPYPDTAPTLAALRSAGVKVAVVSNI 162
                  46789***********************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1759.49
//
Query:       KIR62325.1  [L=356]
Description: aminotransferase class V [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-31  107.1   0.0    2.6e-30  105.6   0.0    1.6  1  Aminotran_5      Aminotransferase class-V
    8.6e-08   31.1   0.0    1.1e-07   30.7   0.0    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
      0.004   16.5   0.1     0.0057   16.0   0.1    1.1  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.0   4.4e-34   2.6e-30      51     332 ..      45     321 ..      33     346 .. 0.85

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 4.4e-34
                  HHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESB CS
  Aminotran_5  51 kvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithv 148
                   va+li+a+    ++   + ++ ++ +a ++     p+d++v+t++e       w++   r ga+ +v+    + + d d+le+ ++e+t lv++ h+
   KIR62325.1  45 SVAALIGAPA-GSLVTDANLSTLLARIASCFD-YRPPRDRVVTTDLEFPTVPFVWNAFG-RYGARADVVAT-GGVRFDQDALEARIDERTLLVCVPHA 138
                  6777777775.444444444445666666664.3789*********************9.88****99876.88999********************* PP

                  ETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEET..TEEEEHCT CS
  Aminotran_5 149 snvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghKllgPtGiGvlyvrkellekleplllggemveevsl..eettfaea 244
                  s ++G   ++++++++a+++galv+vDa q+vg  p+dv +lgvD++  ++hK l   G+ + yvr++l  +lep+ +g +  +       +t++a  
   KIR62325.1 139 SFASGDTIDLPRLVAHAHDAGALVVVDAFQTVGVLPLDVTALGVDVVLGGAHKWLCGVGTAFCYVRPDLTPRLEPAATGWQAGDVALTfrPSTGWAAG 236
                  *****************************************************9999**********************887665433368899**** PP

                  TGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTT CS
  Aminotran_5 245 pskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeeg 332
                   ++f +GTp      + +  l++l+ +g+ ai++h+ + + ++ er ++ + + ++ p++ +rr ++v++ +++ +a  v++ L+ ++
   KIR62325.1 237 AQRFAGGTPFPLTSLVSQVGLDLLAGVGVPAIRRHSLACTGRIIERAAAAG-IAVVSPTEPHRRGGVVCLDVPDGEA--VKRRLAARD 321
                  **********************************************77665.556699999********99987664..555555554 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.9e-11   1.1e-07      61     205 ..      46     198 ..      40     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.9e-11
                      HHHHHT-.SEEEEESSHHHHHHHHHHTTS-T..TEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST....TSHHHHHHHCCTTEEEEEEESS- CS
  Cys_Met_Meta_PP  61 iaaLegg.eaalavssGmaAiaaailallka..GdeivvsddlYggtqrllkkvlkklgievkfvdt....sdleelekaikentklvylEtpt 147
                      +aaL g+ + +l++ + ++++ a i + +      + vv++dl  +t  ++ + + + g ++++v t     d+++le+ i+e+t lv +   +
       KIR62325.1  46 VAALIGApAGSLVTDANLSTLLARIASCFDYrpPRDRVVTTDLEFPTVPFVWNAFGRYGARADVVATggvrFDQDALEARIDERTLLVCVPHAS 139
                      566666644455566666666666666654433556677777777899999999999999999999866666899******************* PP

                      TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTT.S-GGGGT-SEEEEETTTTTTCSSS CS
  Cys_Met_Meta_PP 148 npllkvvDiekiaklakkagvlvvvDntfaspll.qrplklgaDivvhSaTKylgGhsd 205
                          +++D++++++ a++ag+lvvvD+  + ++l     +lg+D+v+  a K+l G ++
       KIR62325.1 140 FASGDTIDLPRLVAHAHDAGALVVVDAFQTVGVLpLDVTALGVDVVLGGAHKWLCGVGT 198
                      ***************************99999762566689*************99876 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   9.5e-07    0.0057      28     150 ..      42     171 ..      29     177 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.5e-07
                      HHHHHHHHHT-SEEEEESSHHHHHHHHHHH..TTTT.TT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TT.TSSB-GGGCGGG--TTEEEEEE CS
  DegT_DnrJ_EryC1  28 FEkafaaylgvkhaiavssGtaAlhlaLra..lgvg.pgdeVIvpsltFvatanavlelgakpvfvDvdpd.tynidpaaieaaitertkaIlp 117
                      ++  +aa +g+     v+ +  + +la  a  ++   p+d V+++ l F +   +    g     +Dv ++  +  d +a+ea i ert  + +
       KIR62325.1  42 YADSVAALIGAPAGSLVTDANLSTLLARIAscFDYRpPRDRVVTTDLEFPTVPFVWNAFGRYGARADVVATgGVRFDQDALEARIDERTLLVCV 135
                      555666666666665555555555555555455555899***********98777777777777788765515679****************99 PP

                      B-G...GGB---HHHHHHHHHHCT-EEEEE-TT-TT CS
  DegT_DnrJ_EryC1 118 Vhl...yGqvadmdalkaiaakhglkvieDaAhAlG 150
                       h+    G+  d+++l a a++ g  v+ Da + +G
       KIR62325.1 136 PHAsfaSGDTIDLPRLVAHAHDAGALVVVDAFQTVG 171
                      99633369***********************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2758.99
//
Query:       KIR62326.1  [L=265]
Description: hypothetical protein TK50_31750 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-09   37.0   1.7    8.8e-09   35.5   1.7    1.9  1  zf-HC2    Putative zinc-finger
  ------ inclusion threshold ------
        6.2    7.0   5.3        3.1    7.9   0.3    2.4  2  CrgA      Cell division protein CrgA


Domain annotation for each model (and alignments):
>> zf-HC2  Putative zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   1.7   9.8e-13   8.8e-09       1      35 []       3      37 ..       3      37 .. 0.99

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 9.8e-13
                HCCHHHHHHHHHCCT-SCCCHCCCHHHHCHTCHHC CS
      zf-HC2  1 CeevrelLsaYlDGeLspeerarveaHLaeCpdCr 35
                Ce++re+Lsa lDGe +p er + e HL +C dCr
  KIR62326.1  3 CERWREMLSAQLDGEETPTERVAAEGHLVTCGDCR 37
                **********************************9 PP

>> CrgA  Cell division protein CrgA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.3   0.00035       3.1      30      80 ..      85     146 ..      49     150 .. 0.68
   2 ?    0.9   0.7     0.052   4.7e+02      37      80 ..     157     198 ..     148     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00035
        CrgA  30 sprwyvpvmlglmllGllwlvvyYlage....eip........fmaelgawNlliGfgliivG 80 
                  +r+++ +  +l l+G + +v+  ++ +               + +e  awN+++G g++ v+
  KIR62326.1  85 RERLVAGLRATLGLVGAVQVVLGLVQVGrgttV-AhahatgqhLWHESAAWNVAVGAGFLFVA 146
                 556666666666777776666665555443430.134444444567788**********9987 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.052
        CrgA  37 vmlglmllGllwlvvyYlageeipfmaelgawNlliGfgliivG 80 
                  ml  +++ l+ l v+ l  +++  ++ l +  +l+ fg ++++
  KIR62326.1 157 PMLSAFVATLVLLSVNDLVTGQVA-VSRLVSHAILV-FGWVLTA 198
                 599999999*******99999999.88887777766.6665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1818.45
//
Query:       KIR62327.1  [L=166]
Description: hypothetical protein TK50_31760 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-07   30.9   0.5    5.4e-07   30.1   0.5    1.5  1  PepSY       Peptidase propeptide and YPEB domain
    0.00022   21.2   0.7    0.00022   21.2   0.7    2.7  2  PepSY_2     Peptidase propeptide and YPEB domain
  ------ inclusion threshold ------
        1.9    8.1   8.6        2.2    8.0   8.6    1.1  1  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> PepSY  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.5     9e-11   5.4e-07       1      62 [.      83     141 ..      83     142 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 9e-11
                 SS-HHHHHHHHHHHSTTE.EEEEEEEEEETTEEEEEEEEE.EE.TTEEEEEEEETTT--EEEE CS
       PepSY   1 kiseeqAlaiAlaavpgk.iieielededdgrlvYevelstaepegpeyevfiDAkTGkvlkk 62 
                 k+++++A +iAla+ +g  i+eie +de +gr+v+ +e++   ++ +e e+++D + G+v++ 
  KIR62327.1  83 KVDQQRAGEIALARAGGGrIVEIEADDE-NGRAVWSIEIV---DGQTEHEIDVDRNDGTVVEA 141
                 56788999*******9998999999999.*********99...59999************975 PP

>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.4  11.2         3   1.8e+04      30      30 ..      33      33 ..       6      58 .. 0.52
   2 !   21.2   0.7   3.6e-08   0.00022      13      83 ..      68     141 ..      54     142 .. 0.74

  Alignments for each domain:
  == domain 1  score: -8.4 bits;  conditional E-value: 3
     PepSY_2 30 l 30
                +
  KIR62327.1 33 V 33
                1 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 3.6e-08
     PepSY_2  13 aaAlAgrrdtdspkadwlpreklvaklea.qGy.kvkkievddggc...yEvegldkdGkkveikldpatgevvke 83 
                 + A  ++ dt +p  +  +++ + +++ a +G  ++ +ie+dd++    + +e + +   + ei++d ++g vv+ 
  KIR62327.1  68 PSATGAPADTGAPAGKV-DQQRAGEIALArAGGgRIVEIEADDENGravWSIE-IVDGQTEHEIDVDRNDGTVVEA 141
                 23333567888887764.4555554444446666*********998999****.99999***************97 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   8.6   0.00037       2.2     107     145 ..     125     165 ..      76     166 .] 0.58

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00037
                 -..-----------------..------------------- CS
  Cwf_Cwc_15 107 eareidaddedseeeeeeee..eesdddsdsdsdddddede 145
                 +++eid d +d +  e+e+e  + +d ++ +d ddddd d+
  KIR62327.1 125 TEHEIDVDRNDGTVVEAEKEpvDGDDHHDADDRDDDDDRDD 165
                 23588888888776666666432222233333333333232 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       888  (0.0495287); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1276.78
//
Query:       KIR62328.1  [L=489]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-49  167.7  45.6    3.3e-49  167.7  45.6    2.2  2  MFS_1     Major Facilitator Superfamily
    2.6e-05   23.3   4.6    2.6e-05   23.3   4.6    2.4  2  Sugar_tr  Sugar (and other) transporter
    0.00047   18.7  15.8    0.00047   18.7  15.8    2.6  3  MFS_3     Transmembrane secretion effector
  ------ inclusion threshold ------
        2.5    6.3   4.0         14    3.8   0.4    2.5  2  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.7  45.6   7.3e-53   3.3e-49       1     352 [.      18     410 ..      18     411 .. 0.90
   2 ?   -1.8   6.2      0.26   1.2e+03      95     145 ..     428     477 ..     409     484 .. 0.54

  Alignments for each domain:
  == domain 1  score: 167.7 bits;  conditional E-value: 7.3e-53
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 l+la++ + l+ ++l++a+p  l+ +lg+s + +++ + +yal+++ + + +G  +dr+Grrr+ll+gl+lf+lg+ll+++ ++++  l+++r+ +G+g
  KIR62328.1  18 LCLAQVTVVLDNTVLTVAVP-VLTAELGASTADVQWTINAYALVQSGLLITAGGAVDRYGRRRMLLAGLVLFGLGSLLAAL-AGSTgQLVAARAGMGVG 114
                 6899999*************.9*****************************************************777777.78888************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 +++l+++ +a++ ++f  +er+raig+++a+++lG++ gp++gg++++++ W+a+f+++ ++ ll++  +++l+pe++ + +   ++            
  KIR62328.1 115 GALLVTSTLAVAMQVFDATERPRAIGVWAAASALGFAAGPPVGGAILAHFPWEAIFLVNIPIVLLCLAAGAALVPESRDPAGGRFDVGGValstaglta 213
                 ******************************************************************998888888877777777666666999****** PP

       MFS_1 189 ...................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllal 252
                                                    + ++ +p+++   ++++++++  ++ +++l++fg +g+l+ll+  lq+v+g++ +++agl +  
  KIR62328.1 214 vvyaiiagpeqgwlsvpvlgaavggalllvgfvrwELRVAHPMLD-MVLFRNRRFVG-AISGVVLITFGATGALFLLTQHLQFVRGYP-AWEAGLRMVP 309
                 **********99999999999999999999998888888888888.66666666665.8888888888999999999999********.8999999999 PP

       MFS_1 253 lalvgail..allagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslgg 349
                 +al +++l  a +a+rl++rlg   ++ +++ ll+ ++l++  ++    +++ll++l+++G+g ++++p++  ++++ +ppe+ag+ +g+ +t+  +g+
  KIR62328.1 310 FALSIVVLnlAGVAARLIHRLGTAAAIAVGMTLLAGGLLLVTHAPSD-GYAVLLAGLLTMGTGCALANPAIVEAVMSAIPPEKAGAGAGVDGTMTEVGS 407
                 999999999999********999666666666666666666666666.88888889******************************************* PP

       MFS_1 350 alg 352
                 +lg
  KIR62328.1 408 SLG 410
                 998 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.26
       MFS_1  95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailg..pllgglla 145
                 ++l+++++fpa++a++a    + erg+++  + a++ +G  +g  ++l+g l+
  KIR62328.1 428 AALAGAGSFPAALAAAAT---DAERGQVTDAFRAASEAGQTVGavAVLAGGLL 477
                 344444556666554444...44777777666666666666664444444444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   4.6   5.9e-09   2.6e-05      38     127 ..      40     124 ..      20     192 .. 0.77
   2 ?   -0.8   4.2      0.12   5.4e+02      67     155 ..     324     411 ..     306     473 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 5.9e-09
                 HHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  38 ksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyi 127
                 +++  +s+ ++ ++ +++ +++    ++ag ++dr+GR+  ll++ vlf  g++l a+a    s+ +l+++R  +G+gvG+a  ++++++
  KIR62328.1  40 TAELGASTADVQWTINAYALVQSGLLITAGGAVDRYGRRRMLLAGLVLFGLGSLLAALAG---STGQLVAAR--AGMGVGGALLVTSTLA 124
                 4555568888999999999999999999********************************...9********..5999999999888765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.12
                 HHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  67 gllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaa 155
                   l++r+G   +++++ +l+  g +l   a+    + vl++g + +G g+ la+  +   +    p++++ga  ++  +++ +G  ++ 
  KIR62328.1 324 ARLIHRLGTAAAIAVGMTLLAGGLLLVTHAP-SDGYAVLLAGLLTMGTGCALANPAIVEAVMSAIPPEKAGAGAGVDGTMTEVGSSLGV 411
                 5577778877777777776666666666666.569*****************9998887777777777776655555555555544432 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7  15.8   1.1e-07   0.00047      11     184 ..      14     182 ..       2     195 .. 0.90
   2 ?   -3.1   0.1      0.42   1.9e+03     152     171 ..     266     284 ..     256     291 .. 0.74
   3 ?   -1.9   9.5      0.18   7.9e+02      65     170 ..     320     426 ..     304     461 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.1e-07
       MFS_3  11 vFrviWiaslvsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllal 109
                 v +v+ +a++   l   + +va+  l +++ as + v     a +L    l i aG   D + rR++lla+ +l  l+s+l+++   +g      l+a 
  KIR62328.1  14 VLAVLCLAQVTVVLDNTVLTVAVPVLTAELGASTADVQWTINAYALVQSGLLITAGGAVDRYGRRRMLLAGLVLFGLGSLLAALAGSTG-----QLVAA 107
                 67889999999999999**********************99999**999999***************************9998887766.....68899 PP

       MFS_3 110 tlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsylaliv 184
                    +g+G al   +  A+  ++ ++ + p A+ + +    +  ++GP +gG ++a +   + f vn    l  ++
  KIR62328.1 108 RAGMGVGGALLVTSTLAVAMQVFDATERPRAIGVWAAASALGFAAGPPVGGAILAHFPWEAIFLVNIPIVLLCLA 182
                 99********************************************************999**999766665555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.42
       MFS_3 152 RsvGPAlgGvlvaavGaala 171
                 R vG A++Gv++ ++Ga+ a
  KIR62328.1 266 RFVG-AISGVVLITFGATGA 284
                 4444.999999999999755 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.18
       MFS_3  65 aGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlv 163
                 aG+ a  + r     a+ + + l +  l ++++       +lla  l +g G al +Pa   +v   ++ ++  a   +      +  s G A+ G ++
  KIR62328.1 320 AGVAARLIHRLGTAAAIAVGMTLLAGGLLLVTHAPSDGYAVLLAGLLTMGTGCALANPAIVEAVMSAIPPEKAGAGAGVDGTMTEVGSSLGVAVLGAVL 418
                 55555555555544444444444444455555555556678999999**************************99999999999********9988777 PP

       MFS_3 164 .aavGaal 170
                  a + a+l
  KIR62328.1 419 nARFAALL 426
                 24455554 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.4    0.0031        14       2      86 ..      14      98 ..      13     103 .. 0.94
   2 ?    2.9   0.3     0.006        27     136     193 ..     105     162 ..      99     165 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0031
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  2 flvllsllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgslllalP 86
                +l++l+l++++ ++ ++++ +++  +  + + +++ + +   ++ + +  l++  +   +r  r r++ +g++l++lgsll al 
  KIR62328.1 14 VLAVLCLAQVTVVLDNTVLTVAVPVLTAELGASTADVQWTINAYALVQSGLLITAGGAVDRYGRRRMLLAGLVLFGLGSLLAALA 98
                578999999999999******************************************************************9985 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.006
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 136 flaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllk 193
                 ++a   +G+G+++++t  ++      + ++ p  +g++ a+++lG a G  +G+++l 
  KIR62328.1 105 VAARAGMGVGGALLVTSTLAVAMQVFDATERPRAIGVWAAASALGFAAGPPVGGAILA 162
                 6778889999999999999999999999999999***********9999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 3388.24
//
Query:       KIR62329.1  [L=692]
Description: penicillin amidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.5e-159  532.4  14.1     3e-159  532.1  14.1    1.0  1  Penicil_amidase  Penicillin amidase
  ------ inclusion threshold ------
       0.54   10.2   4.5       0.37   10.7   1.6    2.3  2  XPB_DRD          Xeroderma pigmentosum group B helicase damag


Domain annotation for each model (and alignments):
>> Penicil_amidase  Penicillin amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  532.1  14.1  3.3e-163    3e-159       5     670 ..       2     674 ..       1     677 [. 0.87

  Alignments for each domain:
  == domain 1  score: 532.1 bits;  conditional E-value: 3.3e-163
                      EEEGGGEEEEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH-TBHHHHHHHHHHHT-HHHHHHHHHTS.....HHHHHHHHHHHHH CS
  Penicil_amidase   5 rrDewgvphIyAkneedlffaqGyvhAqdrlwqmellrrtarGrlaelfGpealesDrllrtlglrraaeaelaalldpetralleaYaaGvNa 98 
                      +rD+wgvph+ A++ +dl++ qG ++A dr+wq+e++r++++Grlae +Gp+++ +Dr++r+ +l+++a+ ++ a ldp+tr+++ aYa+GvN+
       KIR62329.1   2 HRDAWGVPHLWAETVDDLARLQGRAAALDRAWQVEVERWRSEGRLAEHLGPAEVGWDRFARRARLDDTARSCY-ARLDPATRRWVAAYAQGVND 94 
                      69***********************************************************************.55589*************** PP

                      HHHH-..-ST-HH.HHHH---.......S.........SS-.X.XXXXX.....XX.X.XX.XXXXXX.......X-EEEEE-TTTBTTSS-EE CS
  Penicil_amidase  99 ylaelkakalPlefallgykp...epWtpvdslavakvmaldl.agnleeelarar.alaa.klgdekvaelfppgSNnwvvsgerTasGkpll 186
                      +l e++a+  ++efa++g +p   +pW+p+ +++v++v++ ++ ++ ++ +++++    aa  +++e  a     gSN+wv  ++  +   p++
       KIR62329.1  95 GLVEGAAA--APEFAAAGCAPgrwRPWSPLGVFLVQHVLFSTFpNKLWRAHVTATLgPTAAtLFDAEPPAGS---GSNAWVTPADPVTGRAPVV 183
                      ***99964..58*********7767******************99999988877665444412233333333...******************* PP

                      EEE-EEESSGGG--EEEEEEETTEEEEEEE-TT-S.S.SEEEESSEEEEEEE-SS-SEEEEEEEEETTEE....EEEEETTEEEE-EEEEEEEE CS
  Penicil_amidase 187 anDPHlglsapslwyqahlqapgldviGaslpGlPgv.liGhnediAWglTnagadvqdlyaeklnpddp....trylydgkwepmetrtetik 275
                      a+DPH+ l++p+++ q++l +p++dv G+++pG+Pg  ++Gh +d+AW++Tna+ad+qdly+e+l+++++    +     ++w p+++r eti 
       KIR62329.1 184 AGDPHRILELPGIYHQVRLACPEFDVLGFAFPGVPGLpHFGHAGDVAWAVTNAMADYQDLYRERLRREGDlvwvR---EADGWAPARRRVETIG 274
                      *********************************************************************864322...3468************ PP

                      EE-TT.EEEEEEEEETTEEEE-.........TB--EEEEG-TTHHHHHHHHHT--SHHHHHHHHHHH---SEEEEEEETT--EEEE--S--B-- CS
  Penicil_amidase 276 vkggddsvtltvreTrhGPvvsd....gkavalrwtalepgdrsldallalnrarnvaefraalkdlaapaqnvvyADreGnigyqaagrvPvr 365
                      v+gg++ + ++v+eT +GPvv+     g+a++lr++ ++ +  ++dall l r r+v+++++al+++  p++ v++ADr+G +   +ag vPvr
       KIR62329.1 275 VRGGEP-EPVEVIETARGPVVDHdqhtGEALSLRTPSRVAQRLGFDALLPLLRSRTVDDVATALQAWVEPVNSVLVADRSGAVTQLVAGLVPVR 367
                      ****99.88*************98766556**************************************************************** PP

                      -...TT--EEETT-GGGS--T.B--GGGS-EEEE..SSEEEESSS----S.........--T-HHHHHHHHHH..SS...-B-HHHHHHHHHT- CS
  Penicil_amidase 366 paaddgllpvpGsdsayeWtg.yipfeelPqvvnPargyivtaNnrvlpddypaalgsdwappyRarrirelLeekaagkkvtledmaalqtdt 458
                      ++   +  pvp+++++y+W+g y+p   lP++    +g  + aN+r  ++d  aalg+d+app+Rarrir+lL   a       ++ aa+++dt
       KIR62329.1 368 DDR-CRQEPVPAWEPRYRWSGeYAP---LPRTAV--TGPTACANDR--RPD-VAALGRDFAPPHRARRIRALL---A-----EGAEPAAVHMDT 444
                      *44.4888***********775888...9*9999..**********..333.46899****************...3.....346889999998 PP

                      BBTHHHHHHHHH......-..GGGHHHHHHHHH-.SB-STT-THHHHHHHHHHHHTT..................................... CS
  Penicil_amidase 459 rsllaerllpll...aleaaeaeaaaaldlLraWdgrmdadsaaaalfaawlaalvral..................fedelg...rlaealek 528
                      r   a  l   l   ++ a + +a++++d+L++Wdgrm ads++aa++aaw+aal+r l                  f ++++   r  +al +
       KIR62329.1 445 RLD-AGVLRGVLgrlDAGALTGPARDLRDRLATWDGRMAADSVDAAAYAAWRAALARGLhehpalrplrspgaydelFGPWTNplgRIGYALDA 537
                      654.33444444533334455556679********************************88888888777777777755555566677788888 PP

                      .....---TTSTTT-SE...SHH.HHHHHHHHHHHHHHHST-T-B.....HHHHEEEE.E...................EE---B-GGG..... CS
  Penicil_amidase 529 lledasfwwddptttpk...trdelllaalaealaeleaaglgadpakwrwgklhrlelrhplg..........fnrg.lpvgGgeetvnatsy 608
                      +++  +          +   + d +++aal+e++        g++p   +wg+ h+l++ h +           + r  +++gG++++v ats+
       KIR62329.1 538 VVAGLP----------RlgvDVDPVAAAALEEVAH-------GDPPG--TWGQRHTLHPVHLPVspevdaavnaM-RArVALGGDSDCVLATSS 611
                      888432..........2233466677777777776.......22222..39*********98889******9954.5569************** PP

                      .....EEEEEEE-EEEEEE--T.S.EEEEETT-S-S-TTSTTSSHHHHHHHTT--EEE--SHH CS
  Penicil_amidase 609 sara.frvtrgpsyrmvvdladrdkaravlpgGqsgnpgsphyaDqlelwaegeylplpftea 670
                      +++  + ++rgp +r+v+dl+dr+++r+v+p+G+sg pg+ph+aDql++wa+ge++p++++++
       KIR62329.1 612 VPGLsDACWRGPVARYVWDLTDRAESRWVVPFGASGRPGDPHFADQLPRWASGELIPVVTDWR 674
                      9988********************************************************996 PP

>> XPB_DRD  Xeroderma pigmentosum group B helicase damage recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1      0.96   8.6e+03      24      37 ..     366     379 ..     357     384 .. 0.78
   2 ?   10.7   1.6   4.1e-05      0.37      11      48 ..     464     500 ..     459     504 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.96
                 EEETTTTEEEEEGG CS
     XPB_DRD  24 ewDeRvekyRapAl 37 
                 + D+R ++  +pA+
  KIR62329.1 366 VRDDRCRQEPVPAW 379
                 57999998888887 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 4.1e-05
                 CSSSTT...-CT.EEETTTTEEEEEGGGHHHHHHHHHC CS
     XPB_DRD  11 dgdprgkaslpfvewDeRvekyRapAlrYrdlveaLra 48 
                 +g++r+      ++wD R  +  + A +Y++ ++aL +
  KIR62329.1 464 TGPARDL-RDRLATWDGRMAADSVDAAAYAAWRAALAR 500
                 5566652.23489**********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4840.59
//
Query:       KIR62330.1  [L=784]
Description: hypothetical protein TK50_31835 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-39  133.9   0.4    1.4e-38  132.9   0.4    1.6  1  CHAT      CHAT domain
    4.6e-10   39.6  38.5      1e-07   32.1   0.9    5.8  5  TPR_12    Tetratricopeptide repeat
    7.5e-07   28.8  24.0      0.022   14.8   0.0    6.8  6  TPR_2     Tetratricopeptide repeat
    4.6e-05   23.0  10.1     0.0022   17.7   0.0    5.4  6  TPR_1     Tetratricopeptide repeat
     0.0099   15.5   0.2       0.44   10.3   0.0    3.0  2  TPR_11    TPR repeat
  ------ inclusion threshold ------
      0.044   13.7   0.5      0.044   13.7   0.5    6.7  7  TPR_10    Tetratricopeptide repeat
       0.09   13.0   3.6        2.5    8.5   0.0    4.0  5  TPR_8     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> CHAT  CHAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   0.4   5.6e-42   1.4e-38       4     269 ..     536     766 ..     533     783 .. 0.89

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 5.6e-42
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CHAT   4 araLydlliaPleaeldgqsvrqlvivpdgeLqliPfealvdpdgrylleryavsyapsarllselrkaaasaasalqlvvgdpkfdaaellrklvfpe 102
                 a aL++ l++Pl+++l   + r lv+vp g+L+++P++ l++         + v++apsa++ +    +++ ++ ++ ++ +               p+
  KIR62330.1 536 AAALDRQLFDPLRRHL---GDRPLVVVPIGALHAVPWSGLPSCA------GRPVTVAPSATAWLVAD-RRDAPDGPP-VLAAG--------------PR 609
                 789************7...558********************98......789*******9854443.333333333.34444..............57 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CHAT 103 lpgteaEaeaiakllaegelkvllgeaatesalksalsrryrvvHfatHgvfnanpplqsglvlsaenseedglLtaeeilelnldgaelVvLsACqtg 201
                 lp++++E++ +a  l    ++v++g++at+ al +al + + + H+a+Hg+f a++pl s+l l       dg+L a+e+ +l  + +  VvLsAC++g
  KIR62330.1 610 LPAAQTEVRQLAGVLPG--ARVFTGADATAGALTAAL-DGAALAHIAAHGTFRADNPLFSRLEL------ADGPLLAYELERLPRP-PGCVVLSACDSG 698
                 ***************55..5*****************.**************************......69**********7777.************ PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CHAT 202 lgevidgegvlgLaralllaGarsviaslwpVddeatalLmkrfyqnllaglskaeALreaqlkllsg 269
                 l+ v+ g++v g++  ll+ Gar+++a+  pV+ e t +Lm  +++++++g+++a+AL+ aq ++  +
  KIR62330.1 699 LSGVRPGDEVMGFTAVLLARGARCLVATVLPVPAEPTTALMLDLHRRMRQGARPARALADAQAAFVAT 766
                 **************************************************************988765 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.32   8.1e+02       9      30 ..       3      24 ..       1      32 [. 0.78
   2 !   32.1   0.9   4.1e-11     1e-07       6      58 ..      36      86 ..      31      89 .. 0.89
   3 !    8.9   0.3    0.0007       1.8      26      71 ..      95     138 ..      93     144 .. 0.88
   4 ?    2.3   5.0      0.08     2e+02       2      59 ..     189     244 ..     188     252 .. 0.79
   5 !   12.2   7.3   6.5e-05      0.17       9      75 ..     277     340 ..     270     342 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.32
      TPR_12  9 laavlrrlgrydeAlellekal 30
                l+ vl+ +gr + Al+   +al
  KIR62330.1  3 LGYVLANAGRTAAALRAVTAAL 24
                7888888899888888888777 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 4.1e-11
      TPR_12  6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyral 58
                  ++++vl+++grydeA + +  a++ia+r   +d++l+a++++n g l   +
  KIR62330.1 36 RMQRGVVLHYRGRYDEAVRDYSLAVDIAQRE--GDRLLEARARNNRGLLNAHR 86
                4459**************************9..9*************998665 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0007
      TPR_12  26 lekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 l ++ +i++ l  +  +++a ++ nLg++  ++g++  Al+ + e+
  KIR62330.1  95 LARSAAIFEGL--GLDLAAADARWNLGIAAGQRGDTVGALRCFAEV 138
                 67899999998..6778************************99987 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.08
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralg 59 
                 +a al  +a + + +g++d A     +a++++rr   + + ++a +++   r+ +++g
  KIR62330.1 189 LAEALLARARAALLAGDLDTATGTAAQARARFRRQ--GRRTWAAFARHVELRAEFRRG 244
                 67788889999999999999999999999999998..778888888887777766665 PP

  == domain 5  score: 12.2 bits;  conditional E-value: 6.5e-05
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                  + + ++lgr d A +ll++a ++arr+  ++ p+ a+  ++L+  +r++g+ ++A ++l++ la++
  KIR62330.1 277 AGRLAAALGRTDRAADLLDAA-ARARRW--GTAPGRAQGWYALALSHRLAGDDRAAARALRRGLAVL 340
                 5778899**************.55559*..99********************************986 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.024        61       7      28 ..       3      24 ..       1      24 [. 0.93
   2 !   14.8   0.0   8.8e-06     0.022       4      31 ..      36      63 ..      33      65 .. 0.88
   3 !    6.2   0.1     0.005        13       1      27 [.     112     138 ..     112     144 .. 0.89
   4 ?    2.6   0.5     0.074   1.9e+02       1      20 [.     190     209 ..     190     219 .. 0.89
   5 ?    3.4   0.7     0.039     1e+02       8      29 ..     278     299 ..     275     301 .. 0.89
   6 !   10.1   0.7   0.00028      0.73       1      29 [.     310     338 ..     310     342 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.024
       TPR_2  7 lGlayyklgdyeeAleafekAl 28
                lG++++++g+ + Al+a  +Al
  KIR62330.1  3 LGYVLANAGRTAAALRAVTAAL 24
                9***************999987 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 8.8e-06
       TPR_2  4 lynlGlayyklgdyeeAleafekAleld 31
                 +++G ++ ++g+y+eA++++  A+ ++
  KIR62330.1 36 RMQRGVVLHYRGRYDEAVRDYSLAVDIA 63
                5789*****************9999875 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.005
       TPR_2   1 aealynlGlayyklgdyeeAleafekA 27 
                 a+a +nlG a+ ++gd   Al++f ++
  KIR62330.1 112 ADARWNLGIAAGQRGDTVGALRCFAEV 138
                 67889*******************986 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.074
       TPR_2   1 aealynlGlayyklgdyeeA 20 
                 aeal ++++a++ +gd++ A
  KIR62330.1 190 AEALLARARAALLAGDLDTA 209
                 79**************9987 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.039
       TPR_2   8 GlayyklgdyeeAleafekAle 29 
                 G+++++lg+ ++A++++++A +
  KIR62330.1 278 GRLAAALGRTDRAADLLDAAAR 299
                 8999*************99975 PP

  == domain 6  score: 10.1 bits;  conditional E-value: 0.00028
       TPR_2   1 aealynlGlayyklgdyeeAleafekAle 29 
                 a+++y+l+l+++ +gd   A++a+++ l+
  KIR62330.1 310 AQGWYALALSHRLAGDDRAAARALRRGLA 338
                 679**********************9986 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.64   1.7e+03       6      23 ..       2      19 ..       1      24 [. 0.83
   2 !   17.7   0.0   8.5e-07    0.0022       3      31 ..      35      63 ..      33      65 .. 0.90
   3 ?   -1.4   0.2      0.92   2.4e+03       1      12 [.      73      84 ..      73      87 .. 0.80
   4 ?    2.4   0.0     0.061   1.6e+02       6      24 ..     117     135 ..     112     138 .. 0.91
   5 ?   -1.4   0.2      0.98   2.5e+03       1      20 [.     190     209 ..     190     209 .. 0.92
   6 ?    4.4   0.1     0.014        36       1      29 [.     310     338 ..     310     342 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.64
                HHHHHHHHTT-HHHHHHH CS
       TPR_1  6 nlGnayfklgkydeAley 23
                 lG+++ + g+   Al +
  KIR62330.1  2 SLGYVLANAGRTAAALRA 19
                59*************987 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 8.5e-07
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1  3 alynlGnayfklgkydeAleyyekALeln 31
                a  ++G+++++ g+ydeA+ +y+ A+ + 
  KIR62330.1 35 ARMQRGVVLHYRGRYDEAVRDYSLAVDIA 63
                7789*******************999875 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.92
                HHHHHHHHHHHH CS
       TPR_1  1 akalynlGnayf 12
                a+a +n+G++  
  KIR62330.1 73 ARARNNRGLLNA 84
                7999****9865 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.061
                 HHHHHHHHTT-HHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyy 24 
                 nlG a  + g+   Al ++
  KIR62330.1 117 NLGIAAGQRGDTVGALRCF 135
                 9*****************9 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 0.98
                 HHHHHHHHHHHHHTT-HHHH CS
       TPR_1   1 akalynlGnayfklgkydeA 20 
                 a+al  ++ a +  g++d A
  KIR62330.1 190 AEALLARARAALLAGDLDTA 209
                 799999**********9987 PP

  == domain 6  score: 4.4 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALe 29 
                 a+ +y l++ ++  g+   A  + ++ L 
  KIR62330.1 310 AQGWYALALSHRLAGDDRAAARALRRGLA 338
                 789*****************999999886 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00017      0.44       3      23 ..      42      62 ..      40      65 .. 0.88
   2 ?    2.0   0.0     0.068   1.7e+02      23      37 ..     107     121 ..     103     126 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00017
      TPR_11  3 ayyeqGkyeeAieaYkkAlkl 23
                +++ +G+y+eA+ +Y+ A+++
  KIR62330.1 42 VLHYRGRYDEAVRDYSLAVDI 62
                6899***********999987 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.068
      TPR_11  23 ldPdnaeayynLGla 37 
                 ld   a+a +nLG a
  KIR62330.1 107 LDLAAADARWNLGIA 121
                 566789*******98 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2      0.22   5.5e+02       8      23 ..       3      18 ..       1      24 [. 0.87
   2 ?   13.7   0.5   1.7e-05     0.044       9      34 ..      40      65 ..      34      67 .. 0.90
   3 ?   -3.4   1.3       4.1     1e+04       2      24 ..      73      95 ..      73     100 .. 0.75
   4 ?    4.2   0.1     0.016        42       7      28 ..     117     138 ..     112     150 .. 0.84
   5 ?   -0.1   2.1      0.38   9.7e+02       9      36 ..     174     201 ..     173     204 .. 0.88
   6 ?    3.2   1.7     0.034        86       5      33 ..     274     302 ..     271     302 .. 0.82
   7 ?   -2.0   0.5       1.4   3.7e+03       8      30 ..     316     338 ..     315     347 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.22
      TPR_10  8 LanalrqrgrydeAea 23
                L+ +l + gr ++A++
  KIR62330.1  3 LGYVLANAGRTAAALR 18
                9*************97 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.7e-05
      TPR_10  9 analrqrgrydeAealleealairrr 34
                +++l+ rgrydeA++++  a++i +r
  KIR62330.1 40 GVVLHYRGRYDEAVRDYSLAVDIAQR 65
                89*******************99987 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.1
      TPR_10  2 AsslnNLanalrqrgrydeAeal 24
                A+++nN + +  +rg + +  +l
  KIR62330.1 73 ARARNNRGLLNAHRGARGRDDDL 95
                78999999998888877666555 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.016
      TPR_10   7 NLanalrqrgrydeAealleea 28 
                 NL++a  qrg+  +A++ + e+
  KIR62330.1 117 NLGIAAGQRGDTVGALRCFAEV 138
                 9***************999887 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.38
      TPR_10   9 analrqrgrydeAealleealairrrll 36 
                 a+a r+++r+  A +l+e  la+ r++l
  KIR62330.1 174 AVAVRELNRRGMASDLAEALLARARAAL 201
                 56668999**************999987 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.034
      TPR_10   5 lnNLanalrqrgrydeAealleealairr 33 
                 + + +++  ++gr d+A +ll+ a ++rr
  KIR62330.1 274 RIDAGRLAAALGRTDRAADLLDAAARARR 302
                 5566888899**********999988876 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 1.4
      TPR_10   8 LanalrqrgrydeAealleeala 30 
                 La  +r  g+  +A + l++ la
  KIR62330.1 316 LALSHRLAGDDRAAARALRRGLA 338
                 77778888888888888888776 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.7   4.3e+03       7      23 ..       3      19 ..       1      24 [. 0.79
   2 ?    8.5   0.0   0.00097       2.5       2      31 ..      34      63 ..      33      65 .. 0.91
   3 ?   -3.0   0.1       4.9   1.3e+04       1      20 [.     190     209 ..     190     209 .. 0.83
   4 ?   -0.4   0.0      0.74   1.9e+03       7      28 ..     277     298 ..     273     302 .. 0.81
   5 ?    2.0   0.1      0.12   3.1e+02       1      28 [.     310     337 ..     310     339 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.7
                HHHHHHHTT-HHHHHHH CS
       TPR_8  7 lgsiylklgdyeeAkey 23
                lg+++ + g+  +A  +
  KIR62330.1  3 LGYVLANAGRTAAALRA 19
                8999******9999766 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00097
                CHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8  2 eayynlgsiylklgdyeeAkeyyekaleld 31
                +a ++ g +++  g+y+eA+  y  a++++
  KIR62330.1 34 RARMQRGVVLHYRGRYDEAVRDYSLAVDIA 63
                67889999*******************997 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.9
                 CCHHHHHHHHHHHTT-HHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeA 20 
                 aea++  +++ l  gd++ A
  KIR62330.1 190 AEALLARARAALLAGDLDTA 209
                 68899999999999998866 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.74
                 HHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekal 28 
                  g++   lg+ + A   +  a 
  KIR62330.1 277 AGRLAAALGRTDRAADLLDAAA 298
                 6899999******988877775 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.12
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekal 28 
                 a+ +y l++ ++  gd  +A  ++++ l
  KIR62330.1 310 AQGWYALALSHRLAGDDRAAARALRRGL 337
                 688**************99999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5313.81
//
Query:       KIR62331.1  [L=154]
Description: hypothetical protein TK50_31850 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00057   20.1   0.3      0.001   19.3   0.3    1.5  1  CarboxypepD_reg  Carboxypeptidase regulatory-like domain


Domain annotation for each model (and alignments):
>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.3   5.8e-08     0.001      13      63 ..      99     148 ..      79     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5.8e-08
  CarboxypepD_reg  13 piagatVtvtnadtgtvastttdadGafrlrglppgtysvtvsapGyatat 63 
                      p  g +Vt++ ++tg   +   d+ G f+l + p+g+ ++ ++a+Gya at
       KIR62331.1  99 PPRGGRVTAR-TATGPYDESPVDEVGFFSLGAPPTGPVRLSARADGYAVAT 148
                      5567789999.699999*************98888************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       196  (0.010932); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1163.12
//
Query:       KIR62620.1  [L=208]
Description: NADP oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-19   70.7   0.0    2.1e-19   69.9   0.0    1.4  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    2.1e-08   33.7   0.1    3.3e-08   33.1   0.1    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
    4.5e-08   33.4   0.0    2.5e-07   31.0   0.0    2.0  2  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
    7.1e-05   22.4   0.0     0.0001   21.9   0.0    1.2  1  IlvN             Acetohydroxy acid isomeroreductase, NADPH-bi
    0.00014   21.7   0.3    0.00024   20.9   0.3    1.4  1  Rossmann-like    Rossmann-like domain
    0.00093   18.8   0.5     0.0023   17.5   0.2    1.8  2  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
     0.0091   15.7   0.2      0.014   15.1   0.2    1.4  1  ApbA             Ketopantoate reductase PanE/ApbA
  ------ inclusion threshold ------
      0.015   15.2   1.1       0.19   11.6   0.5    2.1  2  NAD_binding_10   NAD(P)H-binding
      0.017   15.2   0.0       0.03   14.4   0.0    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
      0.022   14.7   1.7        2.7    7.9   0.2    2.2  2  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
      0.031   14.7   0.0      0.051   14.0   0.0    1.3  1  NAD_binding_7    Putative NAD(P)-binding
      0.049   14.1   0.0      0.096   13.2   0.0    1.5  1  XdhC_C           XdhC Rossmann domain
      0.056   14.0   0.2       0.34   11.5   0.2    2.3  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
      0.071   13.5   4.2       0.28   11.6   4.2    1.9  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
       0.15   11.9   0.1       0.28   11.0   0.1    1.5  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
       0.16   12.3   0.5       0.86    9.9   0.5    2.2  1  TrkA_N           TrkA-N domain
       0.21   10.5   0.0       0.43    9.5   0.0    1.5  2  tRNA-synt_1d     tRNA synthetases class I (R)


Domain annotation for each model (and alignments):
>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0     2e-22   2.1e-19       1      95 [.       2      87 ..       2      89 .. 0.96

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 2e-22
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEEEES CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlselakdalkgklvisvl 95
                   kigiiG+G++g +l+++l+a g   he++v+nsr pe++  la+e g  +ta++ e+a ++a+vvv+a++ ++v+e+ + l    ++g++v+++ 
     KIR62620.1  2 KIGIIGSGHIGGTLTRRLSALG---HEVTVTNSRGPESLGDLARETG--ATAGTLEQATDQAEVVVVAIPLRAVPELPARL----FEGRIVVDAD 87
                   7*********************...********************98..77778***************************....9******985 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.1   3.1e-11   3.3e-08      38     102 ..       2      68 ..       1      71 [. 0.92

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 3.1e-11
                   EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH..CHHHHTCEECSHHHHHHH-SEEEE-S--S CS
  2-Hacid_dh_C  38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkee..eeeelgvelvsleellaesDivslhlplt 102
                   ++GiiG G+IG ++ +rl+a+g +v++++ +  ++    ++e+g++  +le++  ++++v++++pl 
    KIR62620.1   2 KIGIIGSGHIGGTLTRRLSALGHEVTVTNSRGPESLgdLARETGATAGTLEQATDQAEVVVVAIPLR 68 
                   79****************************998776867888899999*****************96 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   2.4e-10   2.5e-07       1     104 [.       2     101 ..       2     106 .. 0.88
   2 ?   -0.2   0.0      0.97     1e+03     109     125 ..     142     158 ..     120     175 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 2.4e-10
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-.SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE-S---HH CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavyn.rtkekveelvaegakaaesieelvasldvvitmvkagkavdeviegllealkkgdilidgstsspe 95 
                    kig+iG G +G  + ++l + g++v+v n r +e++ +l+ e   +a ++e+++++++vv++ ++        + +l ++l +g+i++d  +  p+
     KIR62620.1   2 KIGIIGSGHIGGTLTRRLSALGHEVTVTNsRGPESLGDLARETGATAGTLEQATDQAEVVVVAIPLR-----AVPELPARLFEGRIVVDADNYYPQ 92 
                    79***************************888***********99*******************973.....455666777779999999999998 PP

                    HHHHHHHHH CS
  NAD_binding_2  96 dtrelakel 104
                       ++a+ l
     KIR62620.1  93 RDGDIAELL 101
                    887777665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.97
                    -EEEEEEEESHHHHHHH CS
  NAD_binding_2 109 lkfldaPVSGGeegAek 125
                    ++ ++ PV G ++ A++
     KIR62620.1 142 ADRIGLPVAGDDADAKR 158
                    56788899998888876 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   9.9e-08    0.0001       6      71 ..       2      68 ..       1      82 [. 0.91

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 9.9e-08
                -EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHH.HHHHHTT-EEEEHHHHHHT-SEEEE-S-HH CS
        IlvN  6 kiaviGyGsqGhaqalnlrdsgldvvvglregsksv.kkAkeegfevltvaeavkkadvvmiliPDe 71
                ki +iG G  G + ++ l   g +v+v++ +g +s+ + A+e+g +  t+++a+++a+vv++ iP +
  KIR62620.1  2 KIGIIGSGHIGGTLTRRLSALGHEVTVTNSRGPESLgDLARETGATAGTLEQATDQAEVVVVAIPLR 68
                89*****************************99876378*************************965 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.3   2.3e-07   0.00024      12      88 ..       2      77 ..       1      87 [. 0.81

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.3e-07
  Rossmann-like 12 svGiisaGrvGtalgaaleraghvvvgisaisaasr.eraerrlPdvpvlevedvaaraellllavPdaelpglvkgl 88
                   ++Gii++G++G +l+  l   gh v+  ++    s  ++a++   + +  ++e+ +++ae++++a+P   +p+l + l
     KIR62620.1  2 KIGIIGSGHIGGTLTRRLSALGHEVTVTNSRGPESLgDLARE--TGATAGTLEQATDQAEVVVVAIPLRAVPELPARL 77
                   89***********************98887766664144444..4566678889*************99999886655 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   2.2e-06    0.0023       1      29 [.       1      29 [.       1      33 [. 0.95
   2 ?   -1.8   0.0       1.9     2e+03      73      84 ..      54      65 ..      41      88 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.2e-06
                    SEEEEE--STTHHHHHHHHHHCTSEEEEE CS
  UDPG_MGDP_dh_N  1 mkisviGlGYvGlvtaavlaeighevigv 29
                    mki +iG+G++G++    l+++ghev++ 
      KIR62620.1  1 MKIGIIGSGHIGGTLTRRLSALGHEVTVT 29
                    89************************985 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.9
                    HHHC-SEEEE-- CS
  UDPG_MGDP_dh_N 73 aveeadvifiaV 84
                    a ++a+v+++a+
      KIR62620.1 54 ATDQAEVVVVAI 65
                    334444444433 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   1.3e-05     0.014       1      30 [.       3      32 ..       3      66 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.3e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SC CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrs 30
                i i+G+G iG++l  +L++ g++vt+ + +
  KIR62620.1  3 IGIIGSGHIGGTLTRRLSALGHEVTVTNSR 32
                89***********************98765 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.5   0.00018      0.19       2      54 ..       7      57 ..       7      69 .. 0.75
   2 ?    2.5   0.0      0.11   1.2e+02      10     102 ..      69     170 ..      64     199 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00018
                    TTSHHHHHHHHHHHHC-T-EEEEE.ETTHHHCHHHHCTTTCEEEE--TT-CCHH CS
  NAD_binding_10  2 AtGkvGrllvkellargghevtal.vRnpeklaeleaeeglevvegdvtdvedl 54
                    ++G++G  l+++l a g hevt+   R pe+l +l++e g+++  g ++++ d 
      KIR62620.1  7 GSGHIGGTLTRRLSALG-HEVTVTnSRGPESLGDLARETGATA--GTLEQATDQ 57
                    68**************5.***9986899******986655554..444433333 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.11
                     HHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEE..EES---TCCHHHH.......HHHHHHHHHHCT--EEEE CS
  NAD_binding_10  10 lvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaV..vsalggggkdeeg.......aknivdaakeagvkRfvl 95 
                     +v el ar  +e +++v   +  ++ ++ + +e+++ +++++   ae+lkga +V  + ++ +++  ++g        + +  a + a+ kR+v+
      KIR62620.1  69 AVPELPAR-LFEGRIVVDADNYYPQ-RDGDIAELLDRSLSSSRWTAEHLKGARVVkaFNNIQAQHLMDNGrpagaadRIGLPVAGDDADAKRVVM 161
                     56667777.4777777777777775.466888999999999999999999999995444444433333333444433333344556666666665 PP

                     ..EEETTTT CS
  NAD_binding_10  96 ..vsaigvg 102
                       v a+g +
      KIR62620.1 162 elVDALGFD 170
                     335555555 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.8e-05      0.03      14      83 ..       2      65 ..       1      69 [. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.8e-05
                  EEEEES-SHHHHHHHHHHHCCT-CEEEEEE.SSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-S CS
  Shikimate_DH 14 kvlliGaGemaelvakhLlakgvkkvvvaN.Rtlerakelaeelkgeeiealkleelkellaeadvvisat 83
                  k+ +iG G ++  +++ L+a g + v+v+N R  e   +la+e +++   a +le   ++ ++a+vv++a+
    KIR62620.1  2 KIGIIGSGHIGGTLTRRLSALGHE-VTVTNsRGPESLGDLARETGAT---AGTLE---QATDQAEVVVVAI 65
                  789******************999.9999889************777...55555...5557888888875 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2    0.0026       2.7       1      27 [.       2      28 ..       2      37 .. 0.92
   2 ?    6.0   0.1      0.01        11      63      85 ..      51      73 ..      40      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0026
                    -EEEE--SHHHHHHHHHHHTTT--EEE CS
  NAD_Gly3P_dh_N  1 kiavlGaGswGtalAkvlaenghevrl 27
                    ki+++G+G  G +l + l+  ghev++
      KIR62620.1  2 KIGIIGSGHIGGTLTRRLSALGHEVTV 28
                    79**********************987 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.01
                    HHHHHTT--EEEE---HHHHHHH CS
  NAD_Gly3P_dh_N 63 laealkgadiivlvvPsqalrev 85
                    l++a ++a+++v+++P  a+ e 
      KIR62620.1 51 LEQATDQAEVVVVAIPLRAVPEL 73
                    899*************9999876 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.8e-05     0.051      10      83 ..       3      79 ..       1      92 [. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.8e-05
  NAD_binding_7 10 vlvvGgGevAarkvrklleagakvtvvapevkeeleelvk...laeeelekdlegadlviaatddrelneriaeaak 83
                   + ++G G ++ +  r+l + g +vtv   +  e l +l +   ++  +le+  ++a++v++a++ r++ e  a++ +
     KIR62620.1  3 IGIIGSGHIGGTLTRRLSALGHEVTVTNSRGPESLGDLARetgATAGTLEQATDQAEVVVVAIPLRAVPELPARLFE 79
                   679***********************99994333334444333455668999***********99988776666655 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.1e-05     0.096       3      35 ..       5      47 ..       3      77 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.1e-05
                EE--STTHHHHHHHHHHHTEEEEEEES-G.GGG..........- CS
      XdhC_C  3 ifGaghvaqalarlaaalgfrvtvvdpre.efa..........t 35
                i+G gh++  l r ++alg +vtv ++r  e            t
  KIR62620.1  5 IIGSGHIGGTLTRRLSALGHEVTVTNSRGpE-SlgdlaretgaT 47
                99**************************943.335554444442 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00033      0.34       1      29 [.       2      30 ..       2      62 .. 0.91
   2 ?   -0.5   0.0       1.7   1.8e+03      27      53 ..      82     108 ..      80     123 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00033
                EEEEECSSHHHHHHHHHHHHTTSEEEEEE CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvve 29
                k+ ++G+G ig  l   l++lg++Vtv  
  KIR62620.1  2 KIGIIGSGHIGGTLTRRLSALGHEVTVTN 30
                688***********************975 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
                 EEESSSSSSTTSSHHHHHHHHHHHHHT CS
   Pyr_redox  27 vversdkllrllDeeaskilqeklekn 53 
                 +v+ +d+  ++ D +++++l ++l+  
  KIR62620.1  82 IVVDADNYYPQRDGDIAELLDRSLSSS 108
                 678888888999999999999998765 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.2   0.00026      0.28       9      57 ..      14      77 ..       7     150 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00026
  Glyco_trans_4_4  9 elaraLaarGheVtvltpapapg...............apeleedgvrvhrlpvprrpspladl 57
                      l r+L a+GheVtv  ++++++               +++ +++ v v+ +p+++ p+++a+l
       KIR62620.1 14 TLTRRLSALGHEVTVTNSRGPESlgdlaretgatagtlEQATDQAEVVVVAIPLRAVPELPARL 77
                     689************9866666667776666667666544466889999999999988877663 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00027      0.28       1      31 [.       2      32 ..       2      76 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00027
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S- CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdis 31
                k+++iG+G +G  ++  + + g+eV++++ +
  KIR62620.1  2 KIGIIGSGHIGGTLTRRLSALGHEVTVTNSR 32
                69*************************9873 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.5   0.00081      0.86       3      27 ..       5      29 ..       3      89 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00081
                EES-SHHHHHHHHHHHH.TTEEEEEE CS
      TrkA_N  3 iiGlGrvGrslaeeLse.ggkdvvvi 27
                iiG G +G +l+++Ls+ g++ v+v 
  KIR62620.1  5 IIGSGHIGGTLTRRLSAlGHE-VTVT 29
                9****************8885.8875 PP

>> tRNA-synt_1d  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00041      0.43      35      87 ..       1      58 [.       1      72 [. 0.80
   2 ?   -2.1   0.0       1.4   1.4e+03     220     247 ..     106     133 ..      78     135 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00041
                  -BHHHHHHHHHHHHHHHHHHHCT-EEEEEE-.....-B-SSTCHHHHHHHHHHHTTTT CS
  tRNA-synt_1d 35 mhvGhLrstiiGdavsrlleflGydvirlnh.....vGDWGtqfGlLiaylekkqdek 87
                  m +G + s  iG++++r l +lG++v+  n      +GD  +  G  +  le+ +d+ 
    KIR62620.1  1 MKIGIIGSGHIGGTLTRRLSALGHEVTVTNSrgpesLGDLARETGATAGTLEQATDQA 58
                  678999999******************9995333348899898888888888876654 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.4
                   HHHHHHHHTT--SEEEEEEECCCHHHHH CS
  tRNA-synt_1d 220 aaakerkeelkadkvlyvidsrqslhlq 247
                   ++ +   e+lk  +v+   ++ q +hl+
    KIR62620.1 106 SSSRWTAEHLKGARVVKAFNNIQAQHLM 133
                   3444445677778888888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1408.09
//
Query:       KIR62621.1  [L=607]
Description: vanomycin resistance protein VanB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-43  145.6   0.0    9.8e-43  144.9   0.0    1.3  1  VanW          VanW like protein
    8.1e-20   71.2   0.0    3.8e-12   46.5   0.0    3.3  4  PG_binding_4  Putative peptidoglycan binding domain
  ------ inclusion threshold ------
       0.47   11.0   6.2        2.1    8.9   0.5    3.2  3  Rnk_N         Rnk N-terminus


Domain annotation for each model (and alignments):
>> VanW  VanW like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.0   1.6e-46   9.8e-43       2     130 .]     401     529 ..     400     529 .. 0.99

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 1.6e-46
        VanW   2 rakNiklaaekingvvikpgetfsfnkvvgprtkekGYkeakvivngklvkgvGGGvcqvsttlynaallagleiverhpHslpvsyvplglDAtvayg 100
                 r++Ni   a+ ++g+v+ pgetfs+n ++g+r  ++GY++a+vi +gklv+gvGGG +q++ttl+na+++agle ve++pHs++ s++p+  ++t+ ++
  KIR62621.1 401 RSQNIVQIAKDVDGTVVLPGETFSLNGHTGERGYAQGYRDAPVILDGKLVPGVGGGTSQFTTTLFNATYYAGLEDVEHKPHSYWFSRYPPVIESTIFWP 499
                 899************************************************************************************************ PP

        VanW 101 slDlkfkNntdypilieasvsdgkltvely 130
                 +lD+kf+Nnt+y +li +s++ +++tv+++
  KIR62621.1 500 NLDFKFRNNTKYGVLIDTSTTASSVTVSIW 529
                 ****************************98 PP

>> PG_binding_4  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0058        34      70     104 ..     114     148 ..      99     152 .. 0.77
   2 !   20.4   0.0   8.1e-08   0.00048       3     109 ..     128     228 ..     126     233 .. 0.88
   3 !   46.5   0.0   6.3e-16   3.8e-12       5     109 ..     244     356 ..     240     362 .. 0.88
   4 ?   -0.9   0.0      0.31   1.9e+03      81     102 ..     502     524 ..     491     528 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0058
  PG_binding_4  70 pkdasfklkggsvkvspekyGwkidkdkllkdlie 104
                    +  ++++ ++s+++ p++ G ++d++++ ++  +
    KIR62621.1 114 STPLRVTVGEKSLEFAPADVGLAVDVEATVDAAAK 148
                   456678888899999999********999987655 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 8.1e-08
  PG_binding_4   3 ikseelglaydieeyvaealtygrkgnelerlsetiaawkevdlrvsldeeklkeyldeiakeidtepkdasfklkggsvkvspekyGwkidkdkll 99 
                   ++++++gla d+e++v++a + ++  + ++rl+  +a    v+++v++d ++l++ l + a +  +e + + + ++g++ k +  + G ++d   ++
    KIR62621.1 128 FAPADVGLAVDVEATVDAAAKAQA--HPVSRLVGSRA----VAPVVTVDAARLDAALRKAAGDQTREWTVPAIIFTGTTPKPVRPRSGLALDPQRSA 218
                   6789**************888555..56666666666....68****************************************************** PP

  PG_binding_4 100 kdliealkkg 109
                   +++++  ++g
    KIR62621.1 219 QAVRDGWLSG 228
                   **99987776 PP

  == domain 3  score: 46.5 bits;  conditional E-value: 6.3e-16
  PG_binding_4   5 seelg.lay.dieeyvaealtygrkgnelerlsetiaawk..evd....lrvsldeeklkeyldeiakeidtepkdasfklkggsvkvspekyGwki 93 
                   +ee++ l +   + +va+++t+  ++++++++ + ia ++  ++d    l + +d ++l++ l + +++i+tep+da+++++gg+ k +++++G ++
    KIR62621.1 244 AEEVDkLVAeLARPAVAAPVTLDTDKGSVTIPPAAIARSLrfTADdagkLTPRVDVKRLRAALGDKLDAIETEPRDARMTVTGGKPKPVDGRPGQQL 340
                   56666555558899************************99883335558************************************************ PP

  PG_binding_4  94 dkdkllkdliealkkg 109
                   d ++l  dl + l   
    KIR62621.1 341 DSAALSRDLLAVLPRT 356
                   **********999776 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.31
  PG_binding_4  81 svkvs.pekyGwkidkdkllkdl 102
                   ++k+  + kyG+ id++ +++ +
    KIR62621.1 502 DFKFRnNTKYGVLIDTSTTASSV 524
                   566664589********999865 PP

>> Rnk_N  Rnk N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.5   0.00035       2.1      24      38 ..      96     110 ..      89     111 .. 0.84
   2 ?   -1.6   0.1      0.65   3.9e+03       9      23 ..     170     184 ..     167     188 .. 0.76
   3 ?    3.7   0.1     0.015        88      16      37 ..     235     256 ..     234     259 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00035
                 SSTTHHHHHHHHHCS CS
       Rnk_N  24 dppaaeaLeaELdRA 38 
                  ++a+++L aEL+RA
  KIR62621.1  96 RTDAIRELRAELERA 110
                 569***********9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.65
                 HHHHHHHHHHCTTTT CS
       Rnk_N   9 DleRLeaLldsladr 23 
                 D++RL+a l ++a++
  KIR62621.1 170 DAARLDAALRKAAGD 184
                 99***9988877654 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.015
                 HHHCTTTTSSTTHHHHHHHHHC CS
       Rnk_N  16 LldsladrdppaaeaLeaELdR 37 
                 L+++ ++ +++ +++L aEL+R
  KIR62621.1 235 LVENTPATSAEEVDKLVAELAR 256
                 7788888889999********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4246.94
//
Query:       KIR62622.1  [L=200]
Description: cholesterol esterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   11.7   0.0        1.9    8.1   0.0    2.1  2  Crr6      Chlororespiratory reduction 6


Domain annotation for each model (and alignments):
>> Crr6  Chlororespiratory reduction 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.015   2.8e+02      81      91 ..      15      25 ..       8      35 .. 0.82
   2 ?    8.1   0.0   0.00011       1.9      46      79 ..      79     112 ..      69     115 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.015
        Crr6 81 laryaamlvpH 91
                  r+aam+vp 
  KIR62622.1 15 WRRFAAMMVPA 25
                579******95 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00011
        Crr6  46 dprElsEipevRlwfirldavyPwlpllldwkaG 79 
                  p  +sEi++ +l+ +      P lp++l  +aG
  KIR62622.1  79 HPVAVSEIADAKLYDLCQSVKIPDLPIVLTINAG 112
                 67789************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1399.48
//
Query:       KIR62623.1  [L=556]
Description: hypothetical protein TK50_16620 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.9e-164  548.6   2.0   3.2e-164  548.5   2.0    1.0  1  DUF885    Bacterial protein of unknown function (DUF885)


Domain annotation for each model (and alignments):
>> DUF885  Bacterial protein of unknown function (DUF885)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  548.5   2.0  1.8e-168  3.2e-164       1     529 []      20     553 ..      20     553 .. 0.96

  Alignments for each domain:
  == domain 1  score: 548.5 bits;  conditional E-value: 1.8e-168
                 HHHHHHCT--S.TT-----SHHHHHHHHHHHHHHHHHHCT.S-CCHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTT-CCCCHHHHHHHHHCGTTSSCH CS
      DUF885   1 PesatslGiydkddrlpdlspaaeaaraarlraalaeldaaidrdklseerldldllrerleleletaeagypleqlralagpvqqlpsllseepfate 99 
                 P+ at++Gi+++dd+l+dlsp+++aara+++r++la+ld + ++++   er+++++++erl l+l+++eag  +++++++a+ +++++ +++++p++ e
  KIR62623.1  20 PVGATYVGIAGHDDQLDDLSPEGYAARAELTRRTLADLDVTEPDSES--ERTAREAMQERLGLDLARYEAGETTSEVNVIASGLHDIRMVFDLMPTEGE 116
                 999******999**************************876666666..************************************************** PP

                 HHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT.-S-HHHHHHHHHHHHHHHGTSSHHCCCHH.CCCCCC...HHHHHHHHHH.HHHHHHHHHHHHHHHHH CS
      DUF885 100 edleaylarlaavpaaldqaranlregaaaglvpprrqvekvieqlrgllagaaaeasalvaplaeleaekealraeleaalaeavkpayaeladflee 198
                 e  ++++arl++++  l++++++lre+a ag+v ++ q+ +v++q++ +++    + +++++ l e+     +l ael++  a+a+++a a + +fl++
  KIR62623.1 117 EAQANIAARLNRFAGTLEGYKTTLREAAGAGRVSSKAQLVEVAKQCDVWTDP---SGDNFFHGLVERLGVDGTLGAELRRG-AAAATAATAGFGQFLRD 211
                 **************************************************85...444567555555545589********.***************** PP

                 CCHHHS-BSS...HHHHHHHHHHHHHSSSS-HHHHHHHHHHHHHHHHHHHHHHHHHH.HH-.HHHHHHHHHCH-GGGEEESHHHHHHHHHHHHHHHHHH CS
      DUF885 199 ellpaarkdapd.GeelYarllrsftttdltpeeihelglaelariraemeaiakev.gfkgdlaevlaalrtdprfyleetdagreellaaaraaiae 295
                 el+p +r d++  G+e+Ya+++++f+++ ++++e++++g aelar++a m+++a+++ g  ++++e++aal++dp++++++++a+r++++a a++ai +
  KIR62623.1 212 ELAPLGR-DKQAaGRERYALASQYFLGARVDLDETYAWGFAELARLEADMRTVAARIvGPGATIDEAVAALDADPARTIQGKEAFRDWMQALADKAISD 309
                 *******.55246********************************************888669************************************ PP

                 HCCHHHCCT---TTS-GCCCEEEEEE-SS.-S.EEEE---TTSSS-EEEEESS-C.HHCCETTCCHHHHHHHTTTTHHHHHH.HHHCCGGS-HHHHHT. CS
      DUF885 296 ldaklpehfgllpkaplevrrvpefiapsasg.ayytppsadgsrpgiyyvnlpd.vesfpkyeletlaaHEgvPGHhlQia.laqeledlprfrrllg 391
                 l +   +hf    ++p +vrr+++++ap++ g +yyt+ps+d+srpg++++++p+ v++f+++++ t+++HEgvPGHhlQ+a +a +++ l+r++rll+
  KIR62623.1 310 LHG---THF----DIPEQVRRIECCLAPTSDGaIYYTGPSEDFSRPGRMWWAVPQgVTDFSTWREVTTVYHEGVPGHHLQVAqTAVRADLLNRWQRLLC 401
                 ***...***....******************999***************************************************************** PP

                 H-HHHHHHHHHHHHHHHHHTTCCGCHHHHHHHHHHHHHHHHHHHHHHHHHC..............SCB--HHHHHHHHHHCS-S-HHHHHHHHHHHHHS CS
      DUF885 392 fasayvEGWAlYaErlmdelGlyddplerlgmlkaellraarlvvDtglHl..............akgwtreqaidfleentalteaeaesevdRyivw 476
                 ++s+++EGWAlY+ErlmdelG+++dp+++lgml+ +++raar++vD+g+Hl              +++wt+e  ++f+++++  +++++++e++Ry++w
  KIR62623.1 402 WVSGHGEGWALYSERLMDELGYLEDPGDKLGMLDGQAFRAARVIVDIGMHLeleipkdnpfdfhpGERWTPELGWEFMRAHCRVPDENLRFELNRYLGW 500
                 *************************************************************************************************** PP

                 TTCCCHHHHHHHHHHHHHHHHHTSTCGG--HHHHHHHHHHC-S--HHHHHHHH CS
      DUF885 477 pGqalsYkvGeleilelRekaekalgdkfdlkaFHdavLsqGslPldvLeeav 529
                 pGqa+sYkvGe+ +l++Re+a++++g++fdl++FH+++L+ G+l+ld L++a+
  KIR62623.1 501 PGQAPSYKVGERIWLQAREDAKARKGADFDLREFHRQALDLGALGLDPLRRAL 553
                 **************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3869.34
//
Query:       KIR62624.1  [L=202]
Description: hypothetical protein TK50_16625 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0008   19.0   0.0    0.00094   18.8   0.0    1.1  1  Uma2      Putative restriction endonuclease


Domain annotation for each model (and alignments):
>> Uma2  Putative restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   5.2e-08   0.00094       4     131 ..      28     159 ..      25     198 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.2e-08
                 HHHHHHSTTEEEEETTS-EEE.EETSHHHHH.HHHHHHHHHHHHHHHH-SEEEEETT--EE-TTS-EE--SEEEEEHH.HHTS-HH.HHSS-SS--SEE CS
        Uma2   4 flqlpeneevryelvdGeliemsplggeher.iaalLaallgnwlrerklgrvfaselgvrlpeeserePDvavvrge.weresrr.iweelpaaPdlv 99 
                 +l   e ++ r+e v G+l++ sp  +++e+ +   L  ll +++++   gr + + ++++++++  ++PDv+v+        +++ +w + +   +l+
  KIR62624.1  28 YLPVRELAGARHECVAGRLVI-SPFLRASESfAMVSLGCLLAPAAEA--AGRHVLGRVNLTVSPGLWIQPDVTVLHTLpA--TDEEdRWVP-AGHCELA 120
                 5555577899***********.6666666665888888888777777..777888888888888999*********6652..333334555.9999*** PP

                 EEE--TTS-.HHHHHHHHHHHHTT-SEEEEEE......T CS
        Uma2 100 vEVlspsts.kdleeKlelYaalgvpeywlvd......p 131
                 vEV s ++      +  + +a+ gvp    v+      +
  KIR62624.1 121 VEVSSDDNPgPAAVDRPRRCAEGGVPWFMRVRltrdpaR 159
                 *****9988777777888888888877777765555442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       184  (0.0102627); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1479.39
//
Query:       KIR62625.1  [L=354]
Description: hypothetical protein TK50_16635 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-12   47.8   0.9    2.8e-12   46.8   0.9    1.5  1  HHH_8     Helix-hairpin-helix domain
    1.6e-08   35.0   0.0    2.7e-08   34.3   0.0    1.4  1  PHP       PHP domain


Domain annotation for each model (and alignments):
>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.9   3.1e-16   2.8e-12       6      67 ..       8      72 ..       4      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 3.1e-16
                HHHHHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS.-HHHH.TT.HCTTSTT--HHHHHHHHHHH CS
       HHH_8  6 daLeeladllelkgedpfrvraYrrAaraiealpe.eitsl.ee.eltklpgiGkkiaakieeil 67
                + L+++a lle+++e ++rvra+r Aa+a++alp  e+++  +  +lt++ g+G+ +a+ ++e l
  KIR62625.1  8 ADLRRIAFLLERANEATYRVRAFRSAAAALAALPAaELAERaRSgRLTEMAGVGDVTARCVAESL 72
                559*************************************85337***************99976 PP

>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0     3e-12   2.7e-08       1      76 [.     105     190 ..     105     286 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 3e-12
                 EEEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTT............HHHHHHHHHHHHTTTTSEEEEEEE........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         PHP   1 dlHvHteyslldgalsieelvkkakelglkaiaiTDhgnlf............gyvefykaakkkykagikpiiGleayvaddseker 76 
                 d+H+H++ s   g+  iee++ +a elg++ + +TDh+++               ++++ a+++   +g++++ G+e+++  d+  ++
  KIR62625.1 105 DCHTHSDWSDG-GSP-IEEMALAAVELGHEYVVLTDHSPRLkvargltadrlrRQLDHVAAVNEALPEGFRILTGIEVDILADGSLDQ 190
                 79*******66.444.6************************************888888888877999***********999987333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2614.52
//
Query:       KIR62626.1  [L=261]
Description: peptidase M23 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-15   55.4   0.0      1e-14   54.5   0.0    1.3  1  Peptidase_M23  Peptidase family M23


Domain annotation for each model (and alignments):
>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   5.6e-19     1e-14       4      89 ..     106     205 ..     103     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 5.6e-19
                    SSEEEEETTT-EEEESSSEEEEEEEE.ET..........TTEEEEEEEECTCEEEEEEEESEES..S-TTEEE-TTCEEEEEBSTSSCS.SSEEEE CS
  Peptidase_M23   4 kGidiaapkgtpVlAaadGtVvfagk.ke..........gyGnvviidhgdgystlyahlskis..vkegqkVkaGqvIGtvgstgrst.gphLhf 85 
                     G+di a  g+pV+A++dGtV++++  ++          + G  v +  +dg+  +  hls+i+  +++g +V+aG+++G+vg tg+++   hLhf
     KIR62626.1 106 PGTDIFADCGEPVVAVTDGTVLEVSRvDRfdkrgplgpyNGGLSVSLLGDDGVRYYGSHLSAIAdgIDAGTRVRAGKQLGRVGRTGNANnVCHLHF 201
                    69*******************99988533778999*9877799999999*************999*********************855489**** PP

                    EEEE CS
  Peptidase_M23  86 eirk 89 
                     +  
     KIR62626.1 202 GLSP 205
                    9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1801.71
//
Query:       KIR62627.1  [L=176]
Description: hypothetical protein TK50_16655 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1216.52
//
Query:       KIR62628.1  [L=238]
Description: CMP deaminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-27   95.4   0.0      3e-27   95.0   0.0    1.1  1  MafB19-deam      MafB19-like deaminase
    1.3e-21   76.4   0.0    2.6e-21   75.4   0.0    1.5  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
     0.0018   18.4   2.0      0.014   15.4   1.8    2.3  1  Bd3614-deam      Bd3614-like deaminase
  ------ inclusion threshold ------
      0.027   14.6   0.0       0.04   14.0   0.0    1.2  1  SNAD4            Secreted Novel AID/APOBEC-like Deaminase 4


Domain annotation for each model (and alignments):
>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.0   6.7e-31     3e-27      18     135 ..     110     238 .]      98     238 .] 0.92

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 6.7e-31
  MafB19-deam  18 tkikedkigaviv.kdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvygagnpks......ln 108
                    ++++++gav+   d+  +a g ne+el  ++taHaE+ al++Aa+ l+ +rldd+tl+vtlepC mCagaiv a++  +v+ga +pk+        
   KIR62628.1 110 EVADDVPVGAVVYgPDGTELAAGRNERELTGDPTAHAEVLALRRAAERLGRWRLDDCTLVVTLEPCTMCAGAIVLARVAAVVFGAWEPKTgaagslWD 207
                  45789*****999678899**********************************************************************99****999 PP

  MafB19-deam 109 kLkvkekngrvelv....eddckeilkgffk 135
                  +L   + n+r e+     e + +++l+ ff+
   KIR62628.1 208 VLRDRRLNHRPEVYggvlEAENSAVLRAFFR 238
                  99*********99999998888999999986 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   5.7e-25   2.6e-21      20     100 ..     111     193 ..      97     194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 5.7e-25
                      TTTSCSEEEEEEE.TTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHH.TSSCETTEEEEEEE--BHHHHHHHHHHT-SEEEEE CS
  dCMP_cyt_deam_1  20 kcsnfkVGavivk.ngeiistgyngepaggsktiHAEvnAilkaakn.ggsklegatlyvtlePCsmCakaiiqsgikkvvvg 100
                        + ++VGav+   +g  ++ g n+++  g++t+HAEv+A++ aa++ g+++l+++tl+vtlePC+mCa ai+ +++  vv+g
       KIR62628.1 111 VADDVPVGAVVYGpDGTELAAGRNERELTGDPTAHAEVLALRRAAERlGRWRLDDCTLVVTLEPCTMCAGAIVLARVAAVVFG 193
                      56789******************************************88********************************97 PP

>> Bd3614-deam  Bd3614-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.8   3.2e-06     0.014      75      98 ..     163     186 ..     110     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.2e-06
  Bd3614-deam  75 eegarllvtlqcCkmCAalvvaaa 98 
                   ++ +l vtl++C mCA+ +v a 
   KIR62628.1 163 LDDCTLVVTLEPCTMCAGAIVLAR 186
                  56899*************998664 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   8.9e-06      0.04      17      61 ..     139     183 ..     127     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.9e-06
       SNAD4  17 lknkkehaEllflekikseldpsqeyrvtwylswsPCaeCaekia 61 
                   + + haE+l l++  ++l + +  + t++++  PC+ Ca +i+
  KIR62628.1 139 TGDPTAHAEVLALRRAAERLGRWRLDDCTLVVTLEPCTMCAGAIV 183
                 334455**********99**999999***************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1543.43
//
Query:       KIR62629.1  [L=235]
Description: purine nucleoside phosphorylase DeoD-type [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-42  145.1   0.3    2.3e-42  144.9   0.3    1.0  1  PNP_UDP_1  Phosphorylase superfamily


Domain annotation for each model (and alignments):
>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.3   1.3e-46   2.3e-42       2     218 ..      15     222 ..      14     234 .. 0.92

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 1.3e-46
                 EEEEESSHHHHHHHHHHEEEEEEEEEE.TTEEEEEEEETTEEEEEEE--SSHHHHHHHHHHHHHHHC--SEEEEEEEEEESSTTT-TT-EEEEEEEEES CS
   PNP_UDP_1   2 iaiivgspgevellaespleetpfgregrgfkfvtGtlkgkpvvivstGiGkpnaavvaeirllkefgvkaiiriGtaGglnpdlkvGDvvipddainf 100
                 ++++ g+p +++ +ae++le+ ++ ++ rg   +tG+++g++v++  +G+G+p+a+ + +++l+ e+gvk++ir+G++G+l ++lk+ Dvv +  +  +
  KIR62629.1  15 RVLMPGDPLRAKWIAETYLEDATCYSTVRGMLGFTGRWNGVEVSVQGSGMGMPSAS-IYAHELINEYGVKTLIRVGSCGALTEELKLRDVVAAIGSSTD 112
                 7899*************99999999999****************************.**************************************9999 PP

                 SSCCGCCTHHCCTCCCCTTSSEE--HHHHHHHHHCHHTTTTTEEEEEEEEESESS-CHHHHHHHHHHTC-CEEESSHHHHHHHHHHTT--EEEEEEEEE CS
   PNP_UDP_1 101 dgrsplygpkeegqyfpdsydapadpelrallkeaaealgikvhrGvvatadgfyaeteaelrllrrlgadaveMEtaavaqlArelgipfaairvvsd 199
                 ++ +++++     ++ +d +++ ad  l+++ +e+ae++gi++++G++++ad fy + ++ +  l+++g+ aveME+aa++++A+++ ++++++ +vsd
  KIR62629.1 113 SNMNRMRF-----AGLIDYAPV-ADFGLLRTSVEVAERRGITMRVGPILAADAFYTDRPDLYDSLADYGVLAVEMESAALYTIAARFRARALTLLTVSD 205
                 99999999.....999999999.**************************************************************************** PP

                 TTTBETTCTCH.HCCCHHH CS
   PNP_UDP_1 200 laaggadaeatheeveefa 218
                 +++ g   ++  ee e+++
  KIR62629.1 206 HIKTGEKTTS--EEREQTF 222
                 9888433333..4444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1623.50
//
Query:       KIR62630.1  [L=346]
Description: hypothetical protein TK50_16675 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2775.97
//
Query:       KIR62631.1  [L=682]
Description: hypothetical protein TK50_16680 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-08   34.5   0.0    4.5e-08   33.2   0.0    1.6  1  NACHT            NACHT domain
     0.0002   21.1   0.0     0.0004   20.2   0.0    1.4  1  AAA_30           AAA domain
    0.00043   20.7   0.1     0.0021   18.5   0.1    2.3  1  AAA_16           AAA ATPase domain
    0.00054   20.3   0.0     0.0019   18.5   0.0    1.8  2  AAA_19           AAA domain
     0.0018   18.8   0.0      0.003   18.1   0.0    1.4  1  AAA_18           AAA domain
     0.0025   18.1   0.0     0.0056   16.9   0.0    1.6  1  AAA_28           AAA domain
     0.0055   17.0   0.0      0.019   15.2   0.0    1.9  2  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.017   14.8   0.0      0.026   14.3   0.0    1.2  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.035   13.7   0.0        0.1   12.2   0.0    1.7  1  AAA_25           AAA domain
      0.058   12.9   0.0      0.088   12.3   0.0    1.1  1  UvrD-helicase    UvrD/REP helicase N-terminal domain
       0.18   11.6   0.0       0.26   11.0   0.0    1.2  1  AAA_11           AAA domain
       0.18   11.5   0.0       0.28   10.9   0.0    1.3  1  AAA_24           AAA domain
       0.19   11.0   0.0       0.27   10.4   0.0    1.1  1  DUF2075          Uncharacterized conserved protein (DUF2075)
       0.19   11.0   0.0       0.49    9.7   0.0    1.6  1  FtsK_SpoIIIE     FtsK/SpoIIIE family
        0.2   12.2   0.0       0.35   11.4   0.0    1.3  1  ABC_tran         ABC transporter
       0.21   10.5   0.0        0.5    9.2   0.0    1.5  2  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
       0.24   11.4   0.0       0.41   10.7   0.0    1.4  1  AAA_14           AAA domain
       0.31   10.5   0.0       0.48    9.8   0.0    1.2  1  Pox_A32          Poxvirus A32 protein


Domain annotation for each model (and alignments):
>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   4.5e-11   4.5e-08       1     160 [.     133     283 ..     133     287 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 4.5e-11
                 SCEEEEC-TTTCHHHHHHHHHHHH..CTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS-T CS
       NACHT   1 rlvilqGeaGsGKTtLlqklalaw..aegklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvsevwavllelperlLlilDglDelvtdl 97 
                 r v++ G++GsGKTt l +la+++  a+g++p    + + +l+l++  ++     l + l+++l e  + +s+  a  +  +  +L +lDglDe+v+  
  KIR62631.1 133 RAVVILGAPGSGKTTTLLELARELvdAAGRDPD--APIPVVLNLSSWATRRL--PLEQWLAAELTERYGIPSR-QATAWIEAGAVLPLLDGLDEVVAAR 226
                 679*******************99444455555..57777777777777764..5888888888888888777.67779999***************54 PP

                 CH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE..EEEE--TCCHHHHHHH CS
       NACHT  98 gqkekqpvrtlLselirkkllpeasllltvrpralrdleeqleeaivlevegfsesrrkqlvr 160
                     + +    ++    +   p +++ + +r +  r+l+ +l     + +++++++++++++ 
  KIR62631.1 227 ----RDECAAAIAVFHAR--QPLTPIAVCCRESEYRELRAGLPVYGTVTIQPLTRPQIERYLD 283
                 ....55888888666666..899**********************9*************9985 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0     4e-07    0.0004       5      78 ..     119     208 ..     118     234 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4e-07
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKttalkal.reaweaag...............grviglAptgkaAkvLaeelgieastiakllk 78 
                 +Q a v+ l +  dr +v+ G++G+GKtt+l +l re+++aag                    l  ++  A++L+e  gi+++    +++
  KIR62631.1 119 DQGASVAGLFERLDRAVVILGAPGSGKTTTLLELaRELVDAAGrdpdapipvvlnlssWATRRLPLEQWLAAELTERYGIPSRQATAWIE 208
                 588888889999999*************99877769999999989999988888887777777888888888888899998888888775 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   2.1e-06    0.0021      25      71 ..     133     186 ..     107     413 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.1e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekd..........ggif.lrgkcdqlesaipysa 71 
                 ++v++ G++G+GK++ + el+r+l ++            ++ l+ ++++    +p+ +
  KIR62631.1 133 RAVVILGAPGSGKTTTLLELARELVDAagrdpdapipV-VLnLSSWATRR---LPLEQ 186
                 89********************9998844444443321.11233333333...33333 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.9e-06    0.0019      10      45 ..     132     167 ..     125     195 .. 0.83
   2 ?   -1.6   0.0       3.1   3.1e+03      68     113 ..     422     476 ..     328     481 .. 0.57

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.9e-06
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeei 45 
                 ++ +++++ pG+GKT++l +  ++lv++ g++p+  
  KIR62631.1 132 DRAVVILGAPGSGKTTTLLELARELVDAAGRDPDAP 167
                 57899**********************999998654 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.1
      AAA_19  68 e.......atTiHrlal..ldfddlltealelleeaeeekklqeee.llivDEfqd 113
                 +       a T+  lal   ++ddl+  a    ++ e++++l+ ++ +   DE  d
  KIR62631.1 422 PglvvglaAATLTLLALvrDEYDDLELIASRE-RRPEDRRPLRVNWvTDTADELRD 476
                 03333333444444444223444444333222.23345555555554445555555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     3e-06     0.003       1      48 [.     135     194 ..     135     254 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf...........gvnlrdvakenglllevdpealde 48 
                 +++ G+pG+GKtt   eL+++l              + nl++ a+ + +l+ + +++l e
  KIR62631.1 135 VVILGAPGSGKTTTLLELARELvDAagrdpdapipvVLNLSSWATRRLPLEQWLAAELTE 194
                 789*****************9855589999999999999999999888888888773333 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.6e-06    0.0056       2      22 ..     135     155 ..     134     165 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.6e-06
      AAA_28   2 ivitGgestGKTtlleaLaar 22 
                 +vi+G++++GKTt+l +La++
  KIR62631.1 135 VVILGAPGSGKTTTLLELARE 155
                 9*****************975 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     2e-05     0.019       6      37 ..     133     164 ..     129     209 .. 0.76
   2 ?   -2.7   0.0       6.4   6.4e+03      70      98 ..     351     380 ..     328     380 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee 37 
                 + +v+ G +G+GKTt+l +l+++l+ +a  + 
  KIR62631.1 133 RAVVILGAPGSGKTTTLLELARELVDAAGRDP 164
                 6789*******************975554444 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.4
      AAA_22  70 a..erlsseellealeqalraravielliiD 98 
                    ++ +  ++l+ l ++lr+r+   ++++D
  KIR62631.1 351 PayRPEQAVQYLTVLGHQLRKRQQ-TIFVLD 380
                 234466666666667777777777.777777 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.6e-05     0.026       2      21 ..     136     155 ..     135     180 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.6e-05
  Viral_helicase1   2 vvhGvpGcGKStlirkllrt 21 
                      v+ G+pG+GK+t + +l+r+
       KIR62631.1 136 VILGAPGSGKTTTLLELARE 155
                      89****************99 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0001       0.1      34      60 ..     133     161 ..     122     175 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0001
      AAA_25  34 elallaGapgtGKttlaldlalava..tG 60 
                   +++ Gapg+GKtt +l+la +++   G
  KIR62631.1 133 RAVVILGAPGSGKTTTLLELARELVdaAG 161
                 567899***************99884444 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.8e-05     0.088      14      46 ..     133     165 ..     127     179 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.8e-05
                    SEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGG CS
  UvrD-helicase  14 gpilveAsAGsGKTfvlaerilrlikeeeiepd 46 
                      ++++ ++GsGKT++l e+  +l+++++ +pd
     KIR62631.1 133 RAVVILGAPGSGKTTTLLELARELVDAAGRDPD 165
                    6789*********************99988887 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00026      0.26      19      42 ..     134     157 ..     119     190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00026
      AAA_11  19 itliqGPPGtgKTktivellsqll 42 
                  ++i G PG+gKT+t++el ++l+
  KIR62631.1 134 AVVILGAPGSGKTTTLLELARELV 157
                 46899***************9995 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00029      0.28       4      25 ..     134     154 ..     131     174 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
      AAA_24   4 kiliyGpsgiGKTtlakelgpk 25 
                  ++i G +g+GKTt+++el  +
  KIR62631.1 134 AVVILGAPGSGKTTTLLEL-AR 154
                 589**************99.33 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00027      0.27       3      26 ..     134     157 ..     132     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
     DUF2075   3 vvlVtGvaGtGKtvvllnllaele 26 
                  v++ G++G+GKt  ll+l+ el 
  KIR62631.1 134 AVVILGAPGSGKTTTLLELARELV 157
                 689*****************9993 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0005      0.49      42      58 ..     135     151 ..     120     157 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0005
                   EEEE--TTSSHHHHHHH CS
  FtsK_SpoIIIE  42 llvaGatgsGKStalnt 58 
                   ++++Ga+gsGK+t+l  
    KIR62631.1 135 VVILGAPGSGKTTTLLE 151
                   89***********9965 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00035      0.35      12      40 ..     133     161 ..     130     180 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00035
                 SEEEEEESTTSSHHHHHHHHTTSS--SEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  12 ekvaivGenGaGKStLlkllagllkpteG 40 
                 + v+i+G  G+GK+t l  la++l +++G
  KIR62631.1 133 RAVVILGAPGSGKTTTLLELARELVDAAG 161
                 5799************9999999877777 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00051       0.5      14      39 ..     131     156 ..     122     163 .. 0.83
   2 ?   -2.9   0.0       2.3   2.3e+03      34      61 ..     364     391 ..     360     398 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00051
  TrwB_AAD_bind  14 etqhilivGttGsGKtqalekllrai 39 
                     ++ ++i+G+ GsGKt++l +l r++
     KIR62631.1 131 LDRAVVILGAPGSGKTTTLLELAREL 156
                    567899**************998765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.3
  TrwB_AAD_bind  34 kllrairargdraivlDltGafvsrfyd 61 
                     l +++r+r++++ vlDl     s f +
     KIR62631.1 364 VLGHQLRKRQQTIFVLDLVAPTWSPFWA 391
                    556799***********98887777765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00042      0.41       3      27 ..     133     157 ..     131     194 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00042
      AAA_14   3 kilvitGaRrvGKTtllkqlikell 27 
                 +++vi Ga  +GKTt l +l++el 
  KIR62631.1 133 RAVVILGAPGSGKTTTLLELARELV 157
                 789******************9987 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00049      0.48      16      39 ..     135     158 ..     127     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00049
     Pox_A32  16 lalvGgsGsGktvyLlsLlrtlvk 39 
                 ++++G  GsGkt+ Ll+L r+lv+
  KIR62631.1 135 VVILGAPGSGKTTTLLELARELVD 158
                 799*****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 4739.43
//
Query:       KIR62632.1  [L=204]
Description: hypothetical protein TK50_16685 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.0   0.1       0.27   10.9   0.1    1.5  2  Prok-E2_A  Prokaryotic E2 family A
       0.27   11.1   5.1        1.3    8.9   4.5    2.1  2  BAT        GAF and HTH_10 associated domain


Domain annotation for each model (and alignments):
>> Prok-E2_A  Prokaryotic E2 family A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.73   6.5e+03      35      54 ..       7      26 ..       3      42 .. 0.76
   2 ?   10.9   0.1     3e-05      0.27      32      78 ..     116     162 ..     101     163 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.73
   Prok-E2_A 35 Vqlplrvarvgkspvgirrv 54
                V+++++ a + + ++g+r+ 
  KIR62632.1  7 VFIATLLAAASIAGSGVRPH 26
                77888888888888888875 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 3e-05
   Prok-E2_A  32 slrVqlplrvarvgkspvgi.rrvEsvrivllsdfplsapavlalred 78 
                 ++ V  ++r+++ + ++vg+  +vE vr++  s++pl ap +++ r+d
  KIR62632.1 116 DDPVPTAERINVRTPQGVGVgTPVEEVRARYRSVSPLDAP-QRTYRFD 162
                 56677888999999999999568*****************.8999998 PP

>> BAT  GAF and HTH_10 associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   4.5   0.00014       1.3      47     139 ..      48     152 ..      46     160 .. 0.83
   2 ?    0.5   0.0     0.056     5e+02      25      46 ..     156     177 ..     152     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00014
         BAT  47 vdgadpeevrdaaedldavedvrvvseeddgtllelt.vsgpslastlaehGgtvrsaeae...........dgrarlvvevPpgadvRsvvealeery 133
                 +++++++ev d + dl + +dv++ ++e + ++  +   + ++   tl+ hG++   ++ +           ++  r+ v+ P+g+ v + ve +++ry
  KIR62632.1  48 AADEAVDEVIDEVVDLNGLTDVEFGDTEQELARRGMLaSDVDTCGPTLVGHGAVSPIFVDDrlvllwlddpvPTAERINVRTPQGVGVGTPVEEVRARY 146
                 66778899999999**********99998844443330344555669*****9988888889************************************* PP

         BAT 134 pdveLv 139
                  +v+ +
  KIR62632.1 147 RSVSPL 152
                 *99866 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.056
         BAT  25 dcrveleglvprsdgevlvfft 46 
                 +++ +++gl +rs++++ +f++
  KIR62632.1 156 QRTYRFDGLLARSGDRAYLFLH 177
                 678899*********9999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1517.78
//
Query:       KIR62633.1  [L=204]
Description: hypothetical protein TK50_16690 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1428.87
//
Query:       KIR62634.1  [L=544]
Description: integrin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-38  129.9  62.2    4.1e-09   36.4   8.1    8.2  8  FG-GAP           FG-GAP repeat
    1.8e-15   57.3  41.0    9.7e-07   29.3   5.8    5.8  6  VCBS             Repeat domain in Vibrio, Colwellia, Bradyrhi
    3.9e-05   23.8  34.0       0.19   12.0   0.2    7.0  6  FG-GAP_2         FG-GAP repeat
     0.0033   16.8  14.1        1.7    8.0   0.3    5.8  6  TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal reg
  ------ inclusion threshold ------
       0.31   11.1   3.6         42    4.2   0.1    4.6  6  BBS2_Mid         Ciliary BBSome complex subunit 2, middle reg


Domain annotation for each model (and alignments):
>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.9     2e-06    0.0072       8      33 ..      52      80 ..      46      83 .. 0.68
   2 !   35.3   4.4   2.5e-12   8.9e-09       1      36 [.     107     145 ..     107     146 .. 0.79
   3 ?   -0.6   0.0      0.43   1.6e+03      18      31 ..     153     167 ..     153     172 .. 0.72
   4 !   36.4   8.1   1.1e-12   4.1e-09       1      37 []     178     216 ..     178     216 .. 0.87
   5 !   19.7   0.2   1.9e-07   0.00068       1      35 [.     248     285 ..     248     287 .. 0.84
   6 !   22.5   0.7   2.5e-08   8.8e-05       2      24 ..     322     344 ..     321     364 .. 0.87
   7 !   29.6   4.3   1.5e-10   5.3e-07       1      35 [.     390     426 ..     390     428 .. 0.81
   8 ?    1.3   0.4      0.11     4e+02       1      12 [.     460     471 ..     460     493 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2e-06
                ESTSSSSS-EEEEEE..TT.-ETCSTTBE CS
      FG-GAP  8 gDvNGDGyaDLavGA..pe.skggaygGa 33
                 D++GDG +DLa     +e s + +  G 
  KIR62634.1 52 SDFDGDGRDDLAASGdpFEtSLPQYPTGV 80
                5***********99764224555555555 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 2.5e-12
                 TTSSEEEESTSSSSS-EEEEEETT...-ETCSTT..BEEEE CS
      FG-GAP   1 fGyslavgDvNGDGyaDLavGApe...skggayg..GaVyv 36 
                 fG++la+gD+NGDGy+DL++G       +++++   G V+v
  KIR62634.1 107 FGTALAAGDFNGDGYDDLVIG--DsdeVDPRNKThaGGVWV 145
                 9********************..545655555555577887 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.43
                 EEEEE.TT-ETCSTT CS
      FG-GAP  18 LavGA.peskggayg 31 
                 L+vGA +++++++ +
  KIR62634.1 153 LVVGAaGHFNQSSPN 167
                 89***8667777666 PP

  == domain 4  score: 36.4 bits;  conditional E-value: 1.1e-12
                 TTSSEEEESTSSSSS-EEEEEE.TT-ETCSTT..BEEEEE CS
      FG-GAP   1 fGyslavgDvNGDGyaDLavGA.peskggayg..GaVyvl 37 
                 fG +la+gD+NGDG +DLa+GA +e + g+++  G+Vyvl
  KIR62634.1 178 FGGALATGDINGDGRDDLAIGAyGE-AIGDKAdaGSVYVL 216
                 899*******************877.55555556*****7 PP

  == domain 5  score: 19.7 bits;  conditional E-value: 1.9e-07
                 TTSSEEEESTSSSSS-EEEEEETT.-ETCSTT..BEEE CS
      FG-GAP   1 fGyslavgDvNGDGyaDLavGApe.skggayg..GaVy 35 
                 fG sla g vN+  yaDL++GAp+ ++g + +  G V+
  KIR62634.1 248 FGFSLAIGTVNNNRYADLVIGAPHeNDGTSWDgsGMVT 285
                 99********************8867777777566666 PP

  == domain 6  score: 22.5 bits;  conditional E-value: 2.5e-08
                 TSSEEEESTSSSSS-EEEEEETT CS
      FG-GAP   2 GyslavgDvNGDGyaDLavGApe 24 
                 G +la gDvNGDG+ +++ GAp+
  KIR62634.1 322 GETLAIGDVNGDGLGEVIAGAPS 344
                 779*****************965 PP

  == domain 7  score: 29.6 bits;  conditional E-value: 1.5e-10
                 TTSSEEEESTSSSSS-EEEEEETT.-ETCSTT.BEEE CS
      FG-GAP   1 fGyslavgDvNGDGyaDLavGApe.skggayg.GaVy 35 
                 fG slavgDv GDG aD++vG p+ + g+++  G ++
  KIR62634.1 390 FGGSLAVGDVTGDGRADVLVGVPGeDIGSTDSaGMIT 426
                 9********************9443666666677665 PP

  == domain 8  score: 1.3 bits;  conditional E-value: 0.11
                 TTSSEEEESTSS CS
      FG-GAP   1 fGyslavgDvNG 12 
                 fG+s+a+  +NG
  KIR62634.1 460 FGASVALLNLNG 471
                 9**********9 PP

>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   4.7   4.8e-10   1.7e-06       1      61 []      53     126 ..      53     126 .. 0.74
   2 !   29.3   5.8   2.7e-10   9.7e-07       1      60 [.     115     196 ..     115     197 .. 0.62
   3 !   20.0   3.4   2.2e-07    0.0008       1      61 []     186     267 ..     186     267 .. 0.74
   4 !   13.4   4.8   2.5e-05      0.09       2      60 ..     257     339 ..     257     340 .. 0.64
   5 !   21.9   3.5   5.7e-08    0.0002       1      61 []     329     409 ..     329     409 .. 0.70
   6 ?    4.0   0.1     0.022        79      43      61 .]     461     479 ..     415     523 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 4.8e-10
        VCBS   1 DldgDGrlDlvva..........ndgglrvyrnngdGtft.dvtktslgg..sgggtgvavgDlDgDGdlDllv 61 
                 D+dgDGr+Dl ++          ++ g++v r++   +   + +  s+ g  +  gt++a+gD++gDG+ Dl++
  KIR62634.1  53 DFDGDGRDDLAASgdpfetslpqYPTGVVVVRYSSAPQVDyFFGVLSSEGgcGCFGTALAAGDFNGDGYDDLVI 126
                 9***********9777776666335669999999865544334444555534666778**************85 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 2.7e-10
        VCBS   1 DldgDGrlDlvva........ndgg.....lrvyrnng.......dGtftdvtkt.slgg....sgggtgvavgDlDgDGdlDll 60 
                 D++gDG++Dlv++        n  +     ++v  +++        G+f+ ++++  + +    +  g ++a gD++gDG+ Dl+
  KIR62634.1 115 DFNGDGYDDLVIGdsdevdprN--KthaggVWVIPGSAsglvvgaAGHFNQSSPNvQG-EpesyDRFGGALATGDINGDGRDDLA 196
                 9************766665551..1455447777777622222224456666554222.245333444469************97 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 2.2e-07
        VCBS   1 DldgDGrlDlvva..........ndgglrvyrnngdGtftdvtktslgg............sgggtgvavgDlDgDGdlDllv 61 
                 D++gDGr+Dl ++          + g+++v+++ g+G +t  +++ l +            ++ g+++a+g ++++ ++Dl++
  KIR62634.1 186 DINGDGRDDLAIGaygeaigdkaDAGSVYVLFG-GSGGLTATGSQYLQQdqaavpgsaernDHFGFSLAIGTVNNNRYADLVI 267
                 9************88888877533466888887.577777666554444444445566877778889*************985 PP

  == domain 4  score: 13.4 bits;  conditional E-value: 2.5e-05
        VCBS   2 ldgDGrlDlvva......ndgg.......lrvyrnngdGtftdvtktslgg............sgggtg......vavgDlDgDGdlDll 60 
                 ++++ ++Dlv++      +  +       +++ +++++G  t  ++ts++g                 +      +a+gD++gDG  +++
  KIR62634.1 257 VNNNRYADLVIGaphendG--TswdgsgmVTLMWGSASGVST-TGATSVTGaavhpatgdeftI----AwylgetLAIGDVNGDGLGEVI 339
                 79**********8888550..34555556*******999533.222222222344454444442....03444669*********98876 PP

  == domain 5  score: 21.9 bits;  conditional E-value: 5.7e-08
        VCBS   1 DldgDGrlDlvva..ndgg.........lrvyrnngdGtftdvtktslgg............sgggtgvavgDlDgDGdlDllv 61 
                 D++gDG+ +++++  +  +         +  + ++  G ++ ++  ++++            +  g ++avgD+ gDG++D+lv
  KIR62634.1 329 DVNGDGLGEVIAGapS--AqtphitgglIAAFTGRS-GGLSASAVKIITQrtagvpgdpeaeDRFGGSLAVGDVTGDGRADVLV 409
                 9************551..334556665588899985.5555444433333344455667766666677**************98 PP

  == domain 6  score: 4.0 bits;  conditional E-value: 0.022
        VCBS  43 gtgvavgDlDgDGdlDllv 61 
                 g++va+  l+g G lD +v
  KIR62634.1 461 GASVALLNLNGTGALDAVV 479
                 5556666666666666554 PP

>> FG-GAP_2  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       1.5   5.3e+03      27      48 ..     122     145 ..     117     146 .. 0.71
   2 ?    0.2   0.1      0.27   9.6e+02      27      38 ..     151     162 ..     148     171 .. 0.73
   3 !   11.9   5.9   5.9e-05      0.21      13      48 ..     173     215 ..     168     217 .. 0.80
   4 !   12.0   0.2   5.4e-05      0.19       9      41 ..     239     277 ..     232     284 .. 0.73
   5 !    7.8   1.7    0.0011       3.8       8      42 ..     380     420 ..     374     424 .. 0.74
   6 !    7.4   0.1    0.0014       5.1       7      24 ..     449     466 ..     443     493 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.5
    FG-GAP_2  27 dtlvVGAygddd..ngsnsGaaYv 48 
                 d lv+G   + d  n++ +G + v
  KIR62634.1 122 DDLVIGDSDEVDprNKTHAGGVWV 145
                 579999985555557777787766 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.27
    FG-GAP_2  27 dtlvVGAygddd 38 
                 ++lvVGA g  +
  KIR62634.1 151 SGLVVGAAGHFN 162
                 579****98655 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 5.9e-05
    FG-GAP_2  13 aagDyFGssVa...isgd...tlvVGAygddd.ngsnsGaaYv 48 
                 +++D+FG + a   i gd    l++GAyg++  ++ ++G++Yv
  KIR62634.1 173 ESYDRFGGALAtgdINGDgrdDLAIGAYGEAIgDKADAGSVYV 215
                 799******9855566766646*******999655599****7 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 5.4e-05
    FG-GAP_2   9 AsDgaagDyFGssVaisgd......tlvVGAygdddngs 41 
                 +  ++ +D+FG+s ai          lv+GA+ ++d+ s
  KIR62634.1 239 PGSAERNDHFGFSLAIGTVnnnryaDLVIGAPHENDGTS 277
                 566889**********6434457756******9999433 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.0011
    FG-GAP_2   8 tAsDgaagDyFGssVai...sgd...tlvVGAygdddngsn 42 
                 ++ D +a D+FG s a+    gd    ++VG +g+d ++++
  KIR62634.1 380 VPGDPEAEDRFGGSLAVgdvTGDgraDVLVGVPGEDIGSTD 420
                 688***********998333233554599999999885554 PP

  == domain 6  score: 7.4 bits;  conditional E-value: 0.0014
    FG-GAP_2   7 LtAsDgaagDyFGssVai 24 
                  ++  ++ gD+FG sVa+
  KIR62634.1 449 VVPGSAERGDKFGASVAL 466
                 56777899*********8 PP

>> TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.034   1.2e+02      23      45 ..      41      63 ..      27      82 .. 0.83
   2 !    5.0   0.1    0.0038        14      28      47 ..     108     127 ..      99     141 .. 0.86
   3 ?    1.2   0.0     0.058   2.1e+02      30      46 ..     181     197 ..     158     216 .. 0.77
   4 ?    3.6   0.0      0.01        37      29      53 ..     324     347 ..     302     357 .. 0.84
   5 !    8.0   0.3   0.00046       1.7      30      76 ..     393     435 ..     365     443 .. 0.78
   6 ?    1.2   0.1     0.059   2.1e+02      28      52 ..     461     485 ..     437     496 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.034
  TcdB_toxin_midN 23 stsvedtnlslaDldGdGladlv 45
                      t v++t  +  D+dGdG  dl 
       KIR62634.1 41 VTPVKGTGATRSDFDGDGRDDLA 63
                     466888889999*******9975 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0038
  TcdB_toxin_midN  28 dtnlslaDldGdGladlvlt 47 
                      +t+l ++D++GdG  dlv+ 
       KIR62634.1 108 GTALAAGDFNGDGYDDLVIG 127
                      68999***********9865 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.058
  TcdB_toxin_midN  30 nlslaDldGdGladlvl 46 
                      +l  +D++GdG  dl +
       KIR62634.1 181 ALATGDINGDGRDDLAI 197
                      67889*******99654 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.01
  TcdB_toxin_midN  29 tnlslaDldGdGladlvltipsagt 53 
                      t l ++D++GdGl +++   psa+t
       KIR62634.1 324 T-LAIGDVNGDGLGEVIAGAPSAQT 347
                      4.889**********9999999885 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.00046
  TcdB_toxin_midN  30 nlslaDldGdGladlvltipsagtgavqkatsllgkpgLLkkidnel 76 
                       l ++D+ GdG ad+++ +p+ + g  + a+       LLk +  +l
       KIR62634.1 393 SLAVGDVTGDGRADVLVGVPGEDIGSTDSAG----MITLLKGSSSGL 435
                      5789******************966665544....466776666655 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 0.059
  TcdB_toxin_midN  28 dtnlslaDldGdGladlvltipsag 52 
                      +  + l+ l+G+G +d v+++ + +
       KIR62634.1 461 GASVALLNLNGTGALDAVVASTGEE 485
                      56688999********999987766 PP

>> BBS2_Mid  Ciliary BBSome complex subunit 2, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.4   4.9e+03       5      22 ..      52      69 ..      50      75 .. 0.81
   2 ?    4.2   0.1     0.012        42       1      21 [.     110     130 ..     109     133 .. 0.80
   3 ?   -0.5   0.0      0.34   1.2e+03       1      19 [.     181     199 ..     181     204 .. 0.72
   4 ?   -2.5   0.0       1.4   5.1e+03      51      63 ..     246     258 ..     244     269 .. 0.69
   5 ?   -1.1   0.0      0.52   1.9e+03       2      20 ..     325     343 ..     324     349 .. 0.76
   6 ?    2.8   0.0     0.032   1.2e+02       1      24 [.     393     416 ..     393     431 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.4
    BBS2_Mid  5 advdgdgeneLvvgsddf 22
                +d+dgdg+++L ++ d f
  KIR62634.1 52 SDFDGDGRDDLAASGDPF 69
                6999**999998877765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.012
    BBS2_Mid   1 alaladvdgdgeneLvvgsdd 21 
                 ala  d++gdg ++Lv+g  d
  KIR62634.1 110 ALAAGDFNGDGYDDLVIGDSD 130
                 678888999999999998776 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.34
    BBS2_Mid   1 alaladvdgdgeneLvvgs 19 
                 ala  d++gdg+++L +g+
  KIR62634.1 181 ALATGDINGDGRDDLAIGA 199
                 5677788888888888775 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.4
    BBS2_Mid  51 erfayaleNGtvg 63 
                 ++f+++l+ Gtv 
  KIR62634.1 246 DHFGFSLAIGTVN 258
                 5677777777774 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.52
    BBS2_Mid   2 laladvdgdgeneLvvgsd 20 
                 la+ dv+gdg  e+++g+ 
  KIR62634.1 325 LAIGDVNGDGLGEVIAGAP 343
                 7788888888888888865 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.032
    BBS2_Mid   1 alaladvdgdgeneLvvgsddfei 24 
                 +la+ dv+gdg+++++vg    +i
  KIR62634.1 393 SLAVGDVTGDGRADVLVGVPGEDI 416
                 799***************877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3824.37
//
Query:       KIR62635.1  [L=388]
Description: hypothetical protein TK50_16705 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2640.05
//
Query:       KIR62636.1  [L=74]
Description: hypothetical protein TK50_16710 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 517.37
//
Query:       KIR62637.1  [L=399]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-11   44.3   5.3    1.7e-11   44.3   5.3    4.3  3  HTH_31    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.037   14.1   0.0       0.11   12.6   0.0    1.9  1  HTH_3     Helix-turn-helix
       0.39   11.1   4.1        1.9    8.8   0.7    3.4  3  TPR_12    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   5.3   2.9e-15   1.7e-11       2      60 ..       8      66 ..       7      69 .. 0.96
   2 ?   -2.8   0.0       1.5   8.8e+03      45      59 ..     153     167 ..     147     172 .. 0.77
   3 ?   -9.6  13.1         3   1.8e+04      19      52 ..     349     381 ..     202     399 .] 0.83

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 2.9e-15
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpae 60
                +G++++++R r++++q+ +A+rlg s+s++ ++E+G r + +++v++ +a+al+++pa 
  KIR62637.1  8 IGRRVAHWRVRRRMTQQILADRLGRSKSWVDKVERGVRALDRLSVIREVAEALRVEPAV 66
                79*****************************************************9985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.5
      HTH_31  45 avlealaralgldpa 59 
                 ++++ l+++++++ +
  KIR62637.1 153 HTVDLLVQVYRVTSS 167
                 678889999999865 PP

  == domain 3  score: -9.6 bits;  conditional E-value: 3
      HTH_31  19 evAerlgvsestlsrlEqGrrgrpspavlealar 52 
                 ++A+r+ v ++++   E+  r+   + v++a+ar
  KIR62637.1 349 AAAGRSLVDADRIAPAETRSRP-AVRTVIAAAAR 381
                 4566666777777777777776.55666666666 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.9e-05      0.11       4      54 ..      15      66 ..      12      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.9e-05
                HHHHTTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHHH CS
       HTH_3  4 lRkqlglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvslde 54
                +R  + ++q+ LA++lG s+s + + E+G ++  +l+++ ++a+aL v+++ 
  KIR62637.1 15 WRVRRRMTQQILADRLGRSKSWVDKVERGvRALDRLSVIREVAEALRVEPAV 66
                588899***********************55555699**********99875 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.12   7.3e+02      42      75 ..     156     189 ..     143     191 .. 0.85
   2 ?   -1.1   0.0      0.41   2.5e+03      27      44 ..     268     286 ..     265     288 .. 0.82
   3 ?    8.8   0.7   0.00032       1.9      12      64 ..     300     351 ..     290     358 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.12
      TPR_12  42 pltattlrnLgrlyralgryeeAlelleealaia 75 
                 +l+++++r  + ++ +lg+ + A+ +  +a+a+a
  KIR62637.1 156 DLLVQVYRVTSSVLVKLGQADIAWLAADRAVAVA 189
                 5678899999999999****99999999999876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.41
      TPR_12  27 ekaleiarrl.lGpdhplt 44 
                 ++a e+a+ +  G+dh++t
  KIR62637.1 268 DQAAEVAELVgDGHDHHWT 286
                 6899999999889999887 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00032
      TPR_12  12 vlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeA 64 
                 +   lg+ ++A++ +ek   ++ +++    +  at l++ +++y++ g++++A
  KIR62637.1 300 AAVDLGDAADAITRHEKI-TRWDQWPRLPAERRATHLIDAAQAYLQVGDLAAA 351
                 44569************9.7777998888999******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2765.91
//
Query:       KIR62638.1  [L=84]
Description: hypothetical protein TK50_16725 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 657.24
//
Query:       KIR62639.1  [L=851]
Description: DNA polymerase III subunit gamma/tau [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-39  133.1   0.0    1.2e-38  132.5   0.0    1.3  1  DNA_pol3_delta2  DNA polymerase III, delta subunit
    4.8e-16   59.0   0.3    8.2e-16   58.2   0.3    1.3  1  DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau do
    1.1e-08   35.6   0.0    2.7e-08   34.3   0.0    1.7  1  AAA              ATPase family associated with various cellul
    1.5e-05   24.8   0.0    3.2e-05   23.7   0.0    1.5  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    4.9e-05   23.6   0.0    0.00025   21.3   0.0    2.1  2  AAA_22           AAA domain
    8.1e-05   23.1   0.5      0.002   18.5   0.0    3.0  2  AAA_16           AAA ATPase domain
     0.0011   18.9   0.0     0.0018   18.2   0.0    1.2  1  Rad17            Rad17 P-loop domain
     0.0024   17.6   0.0     0.0089   15.8   0.0    2.0  1  AAA_30           AAA domain
     0.0038   17.6   0.2      0.012   16.0   0.0    1.9  1  DciA             Dna[CI] antecedent, DciA
     0.0078   16.2   0.0        4.5    7.3   0.0    2.3  2  AAA_5            AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.038   14.0   0.0       0.18   11.8   0.0    1.9  1  AAA_14           AAA domain
      0.082   12.3   0.0       0.14   11.5   0.0    1.3  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
       0.11   12.6   1.0       0.19   11.8   1.0    1.3  1  zf-CXXC          CXXC zinc finger domain
       0.18   12.4   0.0       0.35   11.4   0.0    1.5  1  AAA_18           AAA domain


Domain annotation for each model (and alignments):
>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5   0.0     9e-42   1.2e-38       1     160 [.      19     177 ..      19     180 .. 0.96

  Alignments for each domain:
  == domain 1  score: 132.5 bits;  conditional E-value: 9e-42
  DNA_pol3_delta2   1 gqeealkilskalksgrlahayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivieteekersikldqireliee 94 
                      gqe++ + ls+al+sgrl+hayLf+G++g+gk ++a  la++l+ce++ + +pcg+c+sc+ +++     + vie + + ++  +d+ rel e+
       KIR62639.1  19 GQEHVTEPLSQALRSGRLNHAYLFSGPRGCGKTSSARILARSLNCEQGPTPEPCGQCDSCRSLATDGSGSIDVIEIDAA-SHGGVDDARELREK 111
                      6899999*******************************************************99999999999988888.7789********** PP

  DNA_pol3_delta2  95 lsrkpreskkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfs 160
                      +   p  s+ ki++i++a +++++  NalLk++EEP+e++ fi+ t++++k+L ti+SR+ ++ f+
       KIR62639.1 112 AFFAPARSRFKIYVIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSRTHHYPFR 177
                      *************************************************************99997 PP

>> DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.3   6.4e-19   8.2e-16       5     128 ..     238     363 ..     234     370 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 6.4e-19
  DNA_pol3_gamma3   5 qVrdmLGladrarlldlleallegdaaaalaelreqyaaGadpvvvlrdLlellhqltllkvlpeaaedls..lpeeererlkelaeklsleqL 96 
                      +++++LG++d + l ++ +al++gd aaa a+++++++aG d++ + +dLle l+ l++l+++p+aa++     p+++ er+++ a++l +++L
       KIR62639.1 238 RAAALLGVTDSGLLDEMCDALAAGDGAAAYATVDRVAEAGHDARRFASDLLERLRDLIVLQQVPDAAAKGLidGPADQIERMTAQAQRLGPATL 331
                      67899***********************************************************888876634799****************** PP

  DNA_pol3_gamma3  97 qrlWqlllkgieevknapdpraaaEmvLlRla 128
                      +r+ +++  g+   +  + pr+ +E++  R++
       KIR62639.1 332 SRCADIVHDGLVAMRGTTAPRLLLELICARML 363
                      *************************9988886 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   2.1e-11   2.7e-08       2     123 ..      41     170 ..      40     175 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 2.1e-11
                 EEESSTTSSHHHHHHHHHHHHTHE..........................EEEEETTTCSSSSTTHHHH.HHHHHHHHHHHTSTSEEEEEETGGGHHHH CS
         AAA   2 llyGppGtGKTllakavakelgve..........................fleisgsellskyvgesek.kirelfkeakekakpsilfiDEidalaks 73 
                 l++Gp G+GKT+ a+ +a++l+ e                          ++ei++++     v ++ + + +++f+ a++    +i +iDE++ + ++
  KIR62639.1  41 LFSGPRGCGKTSSARILARSLNCEqgptpepcgqcdscrslatdgsgsidVIEIDAASHG--GVDDARElREKAFFAPARSR--FKIYVIDEAHMVSSA 135
                 89******************9655555666666666667666677666669999999999..55554440445556667665..4***********999 PP

                 HTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTT CS
         AAA  74 rsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgR 123
                              n+Ll+ +++  ++   v +i at++p+k+   +  +R
  KIR62639.1 136 G-----------FNALLKLVEEPPEY---VKFIFATTEPEKVLGTIK-SR 170
                 9...........***********994...99*********9988877.66 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.5e-08   3.2e-05       2      66 ..      10      70 ..       9      82 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.5e-08
      RuvB_N  2 rPksleeyigqekvkeklkifieaakkreealdh.vllyGpPGlGkttlakiiakelgvklkitsg 66
                rP++++e igqe+v+e l+ ++++ +     l+h  l++Gp G Gkt+ a+i+a+ l+ +   t  
  KIR62639.1 10 RPRTFAEVIGQEHVTEPLSQALRSGR-----LNHaYLFSGPRGCGKTSSARILARSLNCEQGPTPE 70
                9*****************98776655.....55525899*****************9988766655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0     2e-07   0.00025       9     128 ..      41     156 ..      36     162 .. 0.76
   2 ?   -2.0   0.0       3.2   4.1e+03      37      84 ..     330     380 ..     315     387 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2e-07
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee....erpevvfvtlpsstsskdllrellralglelkaerlsseell.ealeqalraravielliiDEaqh 102
                 +  G+ G+GKT ++r l+++l+ e+ ++     +++++ +    +s+s +    e+  a + + +    + +el+ +a+   +r+r++  + +iDEa+ 
  KIR62639.1  41 LFSGPRGCGKTSSARILARSLNCEQGPTPepcgQCDSCRSLATDGSGSID--VIEIDAASHGGVD----DARELReKAFFAPARSRFK--IYVIDEAHM 131
                 567******************98888888555544444444444444333..5677777775444....599***999********99..********* PP

      AAA_22 103 lrseealeeLrsllnlsrkgvqliLv 128
                 + s + ++ L +l++     v++i++
  KIR62639.1 132 V-SSAGFNALLKLVEEPPEYVKFIFA 156
                 *.999999999998865666666665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.2
      AAA_22  37 e..erpevv...fvtlpsstsskdllrellralglelkaerlsseellealeq 84 
                 +  +++++v   +v + + t ++ ll+ ++  + l++ +  +s+  ll++le+
  KIR62639.1 330 TlsRCADIVhdgLVAMRGTTAPRLLLELICARMLLPGAD--DSTGGLLQRLER 380
                 146677777777788888889999999999999999988..777777777766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.6e-06     0.002       4      51 ..      19      64 ..      16     154 .. 0.79
   2 ?    0.8   0.1      0.44   5.6e+02      81     129 ..     250     297 ..     224     357 .. 0.51

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.6e-06
      AAA_16  4 GReeeleqLlsalervrsgrp.elvllsGesGvGKsslvrellralekd 51
                G e+ +e L +al+   sgr  ++ l+sG++G+GK+s +r l+r+l+ +
  KIR62639.1 19 GQEHVTEPLSQALR---SGRLnHAYLFSGPRGCGKTSSARILARSLNCE 64
                56666666666666...5566699*******************999866 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.44
      AAA_16  81 llrqlldeaesaeleawrekleealaavpelagaeasrllellkrllal 129
                 ll +++d++++ + +a+ ++ +++++ ++++a+  as+lle l++l++l
  KIR62639.1 250 LLDEMCDALAAGDGAAAYATVDRVAE-AGHDARRFASDLLERLRDLIVL 297
                 44444444333333333333333333.2333333334444444433322 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.4e-06    0.0018      10      70 ..       6      62 ..       3      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.4e-06
       Rad17 10 fekykPekaeelavhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLskelg 70
                + ky+P + +e+    +  e + ++l++  L+++     L sGP GCgk+   ++L++ l 
  KIR62639.1  6 YRKYRPRTFAEVIGQEHVTEPLSQALRSGRLNHA----YLFSGPRGCGKTSSARILARSLN 62
                78**********999999999**********999....9******************9875 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     7e-06    0.0089      21     114 ..      40     146 ..      26     155 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7e-06
      AAA_30  21 avltGpAGtGKttalkalreaweaa.g.........grviglAptgkaAkvLae..elgieastiakllkrlk..grarlepg.tllivDEagmvdtkq 104
                  +  Gp G GKt + + l++ ++ + g          +   lA  g  + ++ e  ++   +   a+ l++ +  +    +++ +++++DEa mv+++ 
  KIR62639.1  40 YLFSGPRGCGKTSSARILARSLNCEqGptpepcgqcDSCRSLATDGSGSIDVIEidAASHGGVDDARELREKAffA--PARSRfKIYVIDEAHMVSSAG 136
                 56789************98888887568888888888888888888877765532233345566677776666551..456677*************** PP

      AAA_30 105 laallkaaek 114
                 ++allk +e+
  KIR62639.1 137 FNALLKLVEE 146
                 ******9987 PP

>> DciA  Dna[CI] antecedent, DciA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   9.5e-06     0.012      18      80 ..     494     565 ..     484     571 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.5e-06
        DciA  18 kalalarllqaWeeivGpelaahcrpvkl.r........dgtLvvevesgawateLryqkpqllerlneelg 80 
                  al  +++++ W+e+vG+    + r + l r        +  Lv+ v+s+++a  ++  ++ l+++l ee+g
  KIR62639.1 494 GALDAVAVRRSWPEVVGKVNRTNKRIAALmRdavvreldGDALVLTVKSTVLAKMMSDHAAVLTDALYEEFG 565
                 577788999**********99999999996699999997667**************************9998 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0035       4.5       3      26 ..      41      64 ..      39      73 .. 0.89
   2 !    6.5   0.0    0.0061       7.8      52      91 ..     106     146 ..      86     163 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0035
                EEE--SSSSHHHHHHHGGGGBS-- CS
       AAA_5  3 lLvGppGtgKselaerlaaalnre 26
                l  Gp G+gK++ a+ la+ ln+e
  KIR62639.1 41 LFSGPRGCGKTSSARILARSLNCE 64
                678****************99765 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0061
                 .....--------.G-SEEEEESGGG--HHHHHHHHHHHHS CS
       AAA_5  52 tslvdsplvraar.egeilvlDEveraesevlnsLlsllee 91 
                 ++l+++++   ar + +i+v+DE ++++s+ +n+Ll+l ee
  KIR62639.1 106 RELREKAFFAPARsRFKIYVIDEAHMVSSAGFNALLKLVEE 146
                 55555555555555779*********************998 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00014      0.18       3      98 ..      38     156 ..      36     172 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
      AAA_14   3 kilvitGaRrvGKTtllkqlikell..................vkkesilyinldderd.....kkladpe.......kllelilek..lke...ekkt 66 
                 ++++ +G+R +GKT  ++ l+++l                            + d               +       +  ++++ek  + +   ++ +
  KIR62639.1  38 HAYLFSGPRGCGKTSSARILARSLNceqgptpepcgqcdscrsL--------ATDGSGSidvieI-----DaashggvDDARELREKafF-AparSRFK 122
                 678899************99999988888776666444333331........2222222222220.....11122333334455554332.23456778 PP

      AAA_14  67 ylflDEiqevpew.ekalkslvdeg.knldvivt 98 
                 + ++DE+++v+++ ++al +lv+e  + +++i++
  KIR62639.1 123 IYVIDEAHMVSSAgFNALLKLVEEPpEYVKFIFA 156
                 8999999999775367888888877556677665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011      0.14       2      43 ..      14      58 ..      13      67 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
  Mg_chelatase  2 lkdvkGqeeakraleiaa.aG..gHnlllvGppGsGKtmlakrlp 43
                  +++v+Gqe+  + l  a  +G  +H  l+ Gp G+GKt  a+ l+
    KIR62639.1 14 FAEVIGQEHVTEPLSQALrSGrlNHAYLFSGPRGCGKTSSARILA 58
                  789*********999987345445**************9999876 PP

>> zf-CXXC  CXXC zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.0   0.00015      0.19      11      32 ..      62      83 ..      58      91 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00015
                SSTTTTS--.BS-SCCCCTSCC CS
     zf-CXXC 11 eCeaCqrtedCgkCsaCrdkkk 32
                +Ce   ++e Cg+C++Cr   +
  KIR62639.1 62 NCEQGPTPEPCGQCDSCRSLAT 83
                69999999*********98765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00028      0.35       3      44 ..      42      94 ..      41     131 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00028
      AAA_18  3 ltGtpGvGKttlakeLskrlgf...........gvnlrdvakenglllevdpe 44
                 +G+ G+GKt+ a+ L+++l++            + +r++a+++  +++v + 
  KIR62639.1 42 FSGPRGCGKTSSARILARSLNCeqgptpepcgqCDSCRSLATDGSGSIDVIEI 94
                68******************999999999998877888888777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.45
# Mc/sec: 5725.79
//
Query:       KIR62640.1  [L=102]
Description: nucleoid-associated protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-34  118.5   4.2    1.3e-34  118.3   4.2    1.0  1  YbaB_DNA_bd  YbaB/EbfC DNA-binding family
     0.0026   17.7   0.0      0.003   17.5   0.0    1.1  1  HrcA         HrcA protein C terminal domain
  ------ inclusion threshold ------
      0.088   12.7   0.0        0.1   12.5   0.0    1.1  1  RTP801_C     RTP801 C-terminal region


Domain annotation for each model (and alignments):
>> YbaB_DNA_bd  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   4.2   2.2e-38   1.3e-34       1      90 [.       5      94 ..       5      95 .. 0.99

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 2.2e-38
                 HHHHHHHHHHHHHHHHHHTTSEEEEEETTTTEEEEEETT--EEEEEE-GGGG.GS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--X CS
  YbaB_DNA_bd  1 mkqaqkmqkkmeeaqeelaekevegssggglVkVtvngkgevksikIdpslldpedkemLedlivaAvndAlkkaeeeaeeemskltggl 90
                 +kqaqkmq+++++aq+elae+e +g++ggglV Vtv+g+g+vksikIdp+++dped+e+Ledl+vaA+ +A ++a++ +e++m++++gg+
   KIR62640.1  5 LKQAQKMQQQIAKAQAELAEAELTGTAGGGLVAVTVSGSGDVKSIKIDPKAVDPEDVETLEDLVVAALHNAAEAARALTEQKMGPVAGGM 94
                 59**************************************************************************************99 PP

>> HrcA  HrcA protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   5.1e-07     0.003      27      98 ..      18      86 ..       2      95 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5.1e-07
        HrcA 27 skaklkhielvplsssrllvvlvtdsgrvenrllelpeevseeelaklsnllneklagltlseiaerlreek 98
                ++a l + el   + + l++v v+ sg v++  ++ p+ v+ e++++l++l+ ++l++    e+a++l e+k
  KIR62640.1 18 AQAELAEAELTGTAGGGLVAVTVSGSGDVKSIKID-PKAVDPEDVETLEDLVVAALHNAA--EAARALTEQK 86
                4578999999999999******************7.******************998754..6666666665 PP

>> RTP801_C  RTP801 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.7e-05       0.1      17      69 ..       8      63 ..       2      83 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.7e-05
    RTP801_C 17 PakLlkriaqdvlrlaekEPcGlrG.alidleveeeeecr..rlgqikvdpstvpt 69
                 +k+ ++ia+   +lae E  G  G +l+ + v    +++  +++  +vdp+ v t
  KIR62640.1  8 AQKMQQQIAKAQAELAEAELTGTAGgGLVAVTVSGSGDVKsiKIDPKAVDPEDVET 63
                57899*****************9862688899988755432455666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1862  (0.103854); expected 358.6 (0.02)
Passed bias filter:                     1320  (0.0736237); expected 358.6 (0.02)
Passed Vit filter:                       139  (0.0077528); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 681.52
//
Query:       KIR62641.1  [L=197]
Description: recombinase RecR [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-25   86.8   0.0    1.7e-24   86.1   0.0    1.4  1  Toprim_4  Toprim domain
    4.6e-14   51.7   2.8    8.6e-14   50.8   2.8    1.5  1  RecR      RecR protein
    7.9e-10   38.9   0.0    1.4e-09   38.1   0.0    1.4  1  Toprim    Toprim domain
    4.3e-06   26.3   1.5    1.2e-05   24.9   0.1    2.3  2  HHH       Helix-hairpin-helix motif
     0.0027   18.3   0.1      0.014   16.0   0.0    2.2  2  HHH_5     Helix-hairpin-helix domain
  ------ inclusion threshold ------
      0.083   13.3   0.0       0.27   11.6   0.0    1.8  2  HHH_8     Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.0   5.7e-28   1.7e-24       2      89 .]      80     170 ..      79     170 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 5.7e-28
    Toprim_4   2 eiiiVEgyaDvlaleka.giknvvavlggalspldgirpeklktenlve..aekkvkevilaldgDaeGeataerlaellleegvkvtrla 89 
                  +++VE + Dv+a+e++ ++++ ++vlgga++pl+gi+p++l++++l++  + + v+e+ila+d+  eGeata +la ++++ g++vtrla
  KIR62641.1  80 VLCVVEEPKDVVAIERTgEFRGRYHVLGGAINPLEGIGPDNLRIRELMTrlGGGAVRELILATDPNTEGEATATYLALMVKPMGISVTRLA 170
                 58******************************************999999****************************999********96 PP

>> RecR  RecR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   2.8   2.9e-17   8.6e-14       2      39 ..      39      76 ..      38      77 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 2.9e-17
                HHHHHHHHHHHHHH-EE-TTT--EESSSS-CCCCSTTS CS
        RecR  2 aeeLaeaLqeakekvrhCsrCgnlteedlCaICsdprR 39
                +++La+aL+++k+ vr+C  C+n++e++ C+IC+dprR
  KIR62641.1 39 INRLAGALRKVKDLVRFCTTCYNVAESEQCRICRDPRR 76
                789**********************************9 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   4.6e-13   1.4e-09       1      88 [.      80     160 ..      80     170 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 4.6e-13
                 EEEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHSTTEEEEEECTTTHHHHHHHHHHH..HHHSEEEEECSSSHHHHHHHHHHHHHHT CS
      Toprim   1 elvivEgpsdaktiakalgsgfqavtaslGhildletefkpvyeeiedkkkvlkalkela..kradeiilatDpDreGeaiawellevlk 88 
                 +l++vE p+d+ +i+++  ++f   +++lG +++  +        i +++  + +l  ++    + e+ilatDp +eGea+a++l+ ++k
  KIR62641.1  80 VLCVVEEPKDVVAIERT--GEFRGRYHVLGGAINPLE-------GIGPDNLRIRELMTRLggGAVRELILATDPNTEGEATATYLALMVK 160
                 69***************..588888888888888888.......7888888888877777788999*******************96666 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1     4e-09   1.2e-05       2      27 ..       2      27 ..       2      28 .. 0.95
   2 ?   -1.0   0.2      0.68     2e+03      16      21 ..     113     118 ..     113     118 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 4e-09
                HHHHHTSSHHHHHTSTT-SHHHHHHH CS
         HHH  2 leglipasreeLlalPGVGpktAeaI 27
                +eg i + ++eL  lPGVGpk A++I
  KIR62641.1  2 YEGAIQDLIDELGRLPGVGPKSAQRI 27
                7999*********************9 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.68
                 STT-SH CS
         HHH  16 lPGVGp 21 
                 l+G+Gp
  KIR62641.1 113 LEGIGP 118
                 79***9 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.7e-06     0.014      34      51 ..      10      27 ..       5      34 .. 0.89
   2 ?   -2.3   0.0       2.4   7.1e+03       8      12 ..     114     118 ..     113     142 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.7e-06
                HHHHHTSTTS-HHHHHHH CS
       HHH_5 34 veeLakipGiGkktAeri 51
                ++eL ++pG+G+k A+ri
  KIR62641.1 10 IDELGRLPGVGPKSAQRI 27
                6899*************9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.4
                 TT--H CS
       HHH_5   8 sGiGp 12 
                 +GiGp
  KIR62641.1 114 EGIGP 118
                 56666 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.1e-05      0.27      41      64 ..       5      28 ..       2      32 .. 0.85
   2 ?   -1.8   0.0       1.4   4.1e+03      34      53 ..      31      50 ..      28      52 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.1e-05
                -HHHH.TTHCTTSTT--HHHHHHHH CS
       HHH_8 41 eitsl.eeeltklpgiGkkiaakie 64
                +i++l +e l +lpg+G+k a++i+
  KIR62641.1  5 AIQDLiDE-LGRLPGVGPKSAQRIA 28
                68888676.**************96 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.4
                CCCC-SS-HHHHTTHCTTST CS
       HHH_8 34 aiealpeeitsleeeltklp 53
                ++ a p +i+ l+++l+k++
  KIR62641.1 31 VLSADPADINRLAGALRKVK 50
                67778888888877677776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1350.52
//
Query:       KIR62642.1  [L=554]
Description: peptide ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-81  273.1   6.9      4e-81  272.9   6.9    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.9   6.9   2.3e-85     4e-81       1     371 [.      81     472 ..      81     478 .. 0.90

  Alignments for each domain:
  == domain 1  score: 272.9 bits;  conditional E-value: 2.3e-85
                 SEEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHC.................TCTEEEEEEEETTEEEEEE CS
   SBP_bac_5   1 evvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyasllee.................dqdikkveavddytvrftl 82 
                 +v+p+LAes w+ ++ g+t+tfkLR gvkF+DGt+++Ae+v ++f+r+ + ++ +++ +  ++                     k+ +a d +tv + +
  KIR62642.1  81 KVTPGLAES-WTPDAAGTTWTFKLRSGVKFHDGTDFNAEAVCANFDRWYNAKGLMQSPDVTAYwqdvmggfaknedpelpPSLFKSCTAKDATTVDLAF 178
                 689******.7**********************************************99999999***************9999*************** PP

                 SSETT..TTTTHCHHHHHHHGC..........CHTCTCTTTTTGTTTSE-BSSSEEEEEEET.TTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHH CS
   SBP_bac_5  83 kkpna..lfltllaavpasiak..........kaaekeddkdkdtnekpvgtGPYklkefkp.gqkivlernpdYwgggkpkldriefkvipdsdaraa 168
                 ++  +  ++  +l+ ++++++k            ++++ ++  +  e+p gtGP+k+k+++  ++++++ern+dY+ g k+kl+ ++fk+i+d++ar +
  KIR62642.1 179 TRVSSkiPAALMLPSFSIHSPKalqqydasnvGGTAEDIKYPPYATEHPTGTGPFKFKSWDVaNKTLTIERNDDYY-GTKAKLKTLIFKTISDENARKQ 276
                 ***99664444444444444448889****9977778888899*****************9967799********9.********************** PP

                 HHHTTSSSEEESTTCCTHCHHHHHTTEEEEEEEEEEEEEEEEETTT.STGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCC CS
   SBP_bac_5 169 alqsGeiddvaepppsdieqlkeakglkvlyespgggvtylafNtk.kppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpa 266
                 al+sG+i+ +  + p+d+e+lk++   +v  ++p  +v yla+N+k +p+++d +vRqA+++A++r+++v+  l  +a++a +++p ++ g++++ +++
  KIR62642.1 277 ALRSGDIQGYDLVGPADVEPLKTEG-FNV-LTRPAFNVLYLAINQKgNPKLADLKVRQAIAHALNRQALVDSKLPPGAKVALNFMPDTVEGFNGDVTKY 373
                 ********************96655.555.6******************************************************************98 PP

                 SHHSHHHHHHHHHHHTT-BCSSTSCEETCEEEEEEEEETTSHHHH.HHHHHHHHHHHHTTEEEEEEEECHHHHHHHH.HHCTTESEEEEEEECTTSTTH CS
   SBP_bac_5 267 ykaydpekAkklLkeaGykdgdggglrekklkltlllasgspaek.aiaeliqqqlkkiGikvevktvdwaatyler.vkdgdfdmillgwgadypdpd 363
                   +y+pekAk+lL+eaG  +   +          ++++  + ++  +i el+ ++lk++Gi+ve  +++w+  yl++ ++ +++d+++lgw++dy+d++
  KIR62642.1 374 --DYNPEKAKALLAEAGASNLTLKFH------YPTEVTRPYMPNPkDIFELLSADLKAVGINVEAIPLKWSPDYLNAtTSGTKHDLHFLGWTGDYGDAY 464
                 ..78***************9975443......55555555555555**********************999555555378889**************** PP

                 HHHHHHHS CS
   SBP_bac_5 364 nflnpfls 371
                 nf+ +f+ 
  KIR62642.1 465 NFIGTFFD 472
                 ****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3592.23
//
Query:       KIR62643.1  [L=334]
Description: peptide ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-40  138.9   8.7    1.5e-40  138.9   8.7    1.6  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2      0.36   6.4e+03      27      40 ..      10      23 ..       4      40 .. 0.57
   2 !  138.9   8.7   8.2e-45   1.5e-40       1     184 [.     113     332 ..     113     333 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.36
  BPD_transp_1 27 llslPsfv.laillv 40
                  l+ +P++  l  ll+
    KIR62643.1 10 LQLIPTLFgL-SLLL 23
                  4455555522.2222 PP

  == domain 2  score: 138.9 bits;  conditional E-value: 8.2e-45
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.....................................vilsilghlilpviill 60 
                   gi+lG+laa++r++ +d+l+ + + ++ ++P+f la +l ++f                                     +  ++l+hl+lp+++l+
    KIR62643.1 113 GIPLGYLAARRRGRLFDHLSVGGSLIGICIPVFFLAYVLKALFsenlgwfpssgrqdptlgatritnffvldglmtrewdAAADALWHLVLPGLALA 209
                   89******************************************************************************9999************* PP

  BPD_transp_1  61 llsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisngg 157
                    + +a++vr++r+++l++l++d+v++a+a+G+++ ++ r++vl+na+ p++t+++l  ggll gavl+e++++ +G+g ++ eai+++dy+  + g 
    KIR62643.1 210 SIPLAIIVRITRASVLEVLNEDFVRTAEAKGLTESTVRRRHVLRNAMLPVVTSIGLLTGGLLSGAVLTETVFAFSGIGAFVAEAISQRDYPVLM-GF 305
                   **********************************************************************************************.** PP

  BPD_transp_1 158 vlalviavlllnlvadilqrlldprvr 184
                   +l+++++++l+nl++d+ + ++dprvr
    KIR62643.1 306 ILIIAVVYVLVNLLVDLSYSVIDPRVR 332
                   **************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2351.54
//
Query:       KIR62644.1  [L=320]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-25   90.0  13.2    1.5e-25   90.0  13.2    2.3  3  BPD_transp_1  Binding-protein-dependent transport system inne
    1.8e-15   56.7   0.6    1.8e-15   56.7   0.6    2.6  3  OppC_N        N-terminal TM domain of oligopeptide transport 
  ------ inclusion threshold ------
       0.14   10.6   9.3        1.9    6.8   9.0    2.2  2  ABC_export    Putative ABC exporter


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.092   5.5e+02     157     172 ..      42      57 ..      23      66 .. 0.58
   2 ?    0.1   0.1     0.096   5.8e+02     107     129 ..     116     138 ..     110     144 .. 0.63
   3 !   90.0  13.2   2.5e-29   1.5e-25       3     185 .]     134     320 .]     128     320 .] 0.92

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.092
  BPD_transp_1 157 gvlalviavlllnlva 172
                   ++++++++++l++l+a
    KIR62644.1  42 AAIVGAVILALFLLIA 57 
                   4444444444444443 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.096
  BPD_transp_1 107 lppiitglilafggllggavlle 129
                   + ++ t+++la+g+l+gg + ++
    KIR62644.1 116 VGVVSTLIGLAVGSLIGGIAGAS 138
                   44566666666666666666554 PP

  == domain 3  score: 90.0 bits;  conditional E-value: 2.5e-29
  BPD_transp_1   3 llGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   ++G+ a+   + ++ +d+ l++++++ll++Ps++lai +         lg + +  +i+++++s + ++rl+r +++++ ++d+v aa+ lG+++ +
    KIR62644.1 134 IAGASAGlgGKWGRAVDNTLMRFVDMLLAMPSLLLAISIA------ALLGAGLTTvMIAVGVVSVPVFARLLRGSMISQSNSDYVLAATSLGVRKPK 224
                   4455555778999***************************......99**9999989**************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgt.llleailgydyseis..........nggvlalviavlllnlvadilqrlldpr 182
                   i  ++v+Pn+l p+i ++ l+++ ++ +a++l+flg    lg+     +++g +++ ++          + ++la+++  l ++l+  ++ ++ldp+
    KIR62644.1 225 IALTHVVPNSLAPVIVQATLTLATAIIEAAALSFLG----LGNnDASIPEWGVMLADAQryldaaprlaILPALAIIVTALGFTLLGEAMREALDPK 317
                   ************************************....6541566778888888888999999999***************************** PP

  BPD_transp_1 183 vrk 185
                   +rk
    KIR62644.1 318 LRK 320
                   996 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.6   2.9e-19   1.8e-15       1      40 [.      28      67 ..      28      82 .. 0.92
   2 ?   -2.9   1.0       1.1   6.8e+03      16      22 ..     174     180 ..     165     204 .. 0.58
   3 ?   -1.6   0.2      0.45   2.7e+03      19      34 ..     293     308 ..     292     311 .. 0.83

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 2.9e-19
      OppC_N  1 slwqdawrrFkrNklAvvglvilllllliaifaPliaPyd 40
                slw++a+rr++rN++A+vg vil+l+lliai++P+++Py+
  KIR62644.1 28 SLWREAFRRLRRNPAAIVGAVILALFLLIAIVGPFLVPYP 67
                8*************************************97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.1
      OppC_N  16 Avvglvi 22 
                 A++g  +
  KIR62644.1 174 ALLGAGL 180
                 3333333 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.45
      OppC_N  19 glvilllllliaifaP 34 
                 +l+i+++ l + ++++
  KIR62644.1 293 ALAIIVTALGFTLLGE 308
                 5899999999998886 PP

>> ABC_export  Putative ABC exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.012        74      16      52 ..      34      70 ..      29      85 .. 0.79
   2 ?    6.8   9.0   0.00032       1.9     442     518 ..     112     194 ..     103     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.012
  ABC_export 16 ikrllkkpaklivlilvlllygflivsslsasseesl 52
                ++rl ++pa  ++ ++++l+++++iv+ +  ++ ++ 
  KIR62644.1 34 FRRLRRNPAAIVGAVILALFLLIAIVGPFLVPYPADA 70
                7888899999999999999999999887777776654 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00032
  ABC_export 442 lcilaylslallflavsvlverl......lgssaskgletmLrmlvlllallPgiavgllvgvltkgdavlillvtavgnllv 518
                 +++l+ ++  l+ lav+ l+  +      lg ++++++ ++L+ +v +l+++P++++++ ++ l++  ++++++++ v+++ v
  KIR62644.1 112 QTLLVGVVSTLIGLAVGSLIGGIagasagLGGKWGRAVDNTLMRFVDMLLAMPSLLLAISIAALLGAGLTTVMIAVGVVSVPV 194
                 556777777777777777777777777789***********************999999999999888888788887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2172.38
//
Query:       KIR62645.1  [L=355]
Description: peptide ABC transporter ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-27   94.6   0.0    9.2e-27   94.2   0.0    1.2  1  ABC_tran   ABC transporter
      6e-18   65.1   0.0    1.1e-17   64.3   0.0    1.5  1  oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal reg
    6.8e-08   32.7   0.2      3e-07   30.6   0.0    1.9  2  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
     0.0013   18.3   0.0     0.0023   17.4   0.0    1.3  1  SMC_N      RecF/RecN/SMC N terminal domain
     0.0014   18.9   0.2     0.0075   16.5   0.2    1.9  1  AAA_22     AAA domain
  ------ inclusion threshold ------
      0.084   12.3   0.2       0.26   10.7   0.0    1.7  2  TniB       Bacterial TniB protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.0   3.1e-30   9.2e-27       2     136 ..      25     183 ..      24     184 .. 0.91

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 3.1e-30
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH.......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx.......... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp.....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren.......... 79 
                 + vs+++ +ge+v++vGe+G+GKS    +++gll +       G+  +dg+dl +     ++ +  + +++++q+  ++l+p + ++ +          
  KIR62645.1  25 DGVSFSVDAGEVVGLVGESGCGKSVTSLAIMGLLPKqpglrVGGKAVFDGTDLLQlddrSRRDIRGRDVAMIFQDplSSLNPVIPIGLQvtevltrhrg 123
                 78*******************************99956666677889999999999998888889999*******998888888777777888****** PP

                 ....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                     ++++e++++l+++g+++ + +++k+ p++LSgG++qr  +a+a++++p+ll++DEpt
  KIR62645.1 124 mkgeAAQKEAADLLDRVGIPD-PRRRLKEYPHQLSGGMRQRALIAMAVACQPRLLIADEPT 183
                 **9999999************.99999*********************************9 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   3.7e-21   1.1e-17       1      65 []     235     300 ..     235     300 .. 0.99

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 3.7e-21
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd.klekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE+++++ lf+ep+HPYT +Ll svprld+++  +l  i+g++ ++ + ++GC FapRC+ +++eC
  KIR62645.1 235 VETARRRPLFREPRHPYTVGLLGSVPRLDAGRGeRLNPIPGSVRDVLAWPDGCAFAPRCTRRVDEC 300
                 8*******************************999******************************* PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.18   5.2e+02       2      19 ..      37      54 ..      36      69 .. 0.83
   2 !   30.6   0.0   9.9e-11     3e-07     220     302 ..     139     219 ..      62     220 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.18
      AAA_21  2 nvliGpNgsGKSnLLdal 19
                 +l+G  g+GKS    a+
  KIR62645.1 37 VGLVGESGCGKSVTSLAI 54
                689*********766666 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 9.9e-11
      AAA_21 220 gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                  v + ++ ++ +  +++lS G+++  al+++  +  +  +ll+ DEp + L+  +++ +lellkel r  g+ +++ TH+  ++
  KIR62645.1 139 RVGIPDPRRRLKEYPHQLSGGMRQR-ALIAMAVACQP--RLLIADEPTTALDVTIQAQILELLKELVRdSGTALVMITHDLGVV 219
                 444555566778889**********.77777765554..9***********************999999***********8876 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   7.5e-07    0.0023      26     211 ..      36     228 ..      27     236 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 7.5e-07
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCC...CCCC--.BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrsekl...sdlihk.skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtk 120
                 +  +vG+ G+GKs    Ai+ +L ++    +  + +   +dl++   ++++ +   +v+++f+++ ++    ++ + i  +v +  + +  ++g+ + +
  KIR62645.1  36 VVGLVGESGCGKSVTSLAIMGLLPKQPGLRVGGKAVfdgTDLLQLdDRSRRDIRGRDVAMIFQDPLSS---LNPVIPIGLQVTEVLTRHRGMKGEAA-Q 130
                 56789**************99999887755555544333789988677788888889*****999888...78889999999998887777777665.6 PP

                 HHHHHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCE CS
                 xxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
       SMC_N 121 kevsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadkl 208
                 ke ++ll ++gi            +LSgG ++ + +a+ +A q   p+ l + De   aLD +  +++ ellke   +  + +++i+++ ++++ +  +
  KIR62645.1 131 KEAADLLDRVGIPDPrrrlkeyphQLSGGMRQRALIAMAVACQ---PR-LLIADEPTTALDVTIQAQILELLKELVRDsgTALVMITHDLGVVAGMCDT 225
                 7899********877899999999*****88777777776654...54.7899********************98766446778889988888877666 PP

                 EEE CS
                 xxx RF
       SMC_N 209 vgv 211
                 + v
  KIR62645.1 226 INV 228
                 655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   2.5e-06    0.0075      10     128 ..      39     212 ..      32     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.5e-06
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaeeerpevv.fvtlpsst..sskdl.lrellralglelka.................................. 70 
                 ++GesG+GK+++   ++  l++++  +  ++ v+   +l ++   s++d+  r+++ +++++l++                                  
  KIR62645.1  39 LVGESGCGKSVTSLAIMGLLPKQPGLRVGGKAVFdGTDLLQLDdrSRRDIrGRDVAMIFQDPLSSlnpvipiglqvtevltrhrgmkgeaaqkeaadll 137
                 89******************9776666644444465555555556788997789999999999999999999999999999****************** PP

      AAA_22  71 .......erlsseellealeqalrarav........ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                        +r +++e+ ++l   +r+ra         ++lli DE    l+   ++++le L++l+   ++g++l+++
  KIR62645.1 138 drvgipdPRRRLKEYPHQLSGGMRQRALiamavacqPRLLIADEPTTaLDvtiQAQILELLKELVR--DSGTALVMI 212
                 *******667777777777777776666777777777*******9999989777************..888888876 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       0.5   1.5e+03      40      50 ..      39      49 ..      35      53 .. 0.86
   2 ?   10.7   0.0   8.5e-05      0.26     109     160 ..     163     212 ..     145     220 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.5
        TniB 40 lvGdsnnGKtm 50
                lvG+s +GK++
  KIR62645.1 39 LVGESGCGKSV 49
                89*******97 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 8.5e-05
        TniB 109 qqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                 ++ +++  ++++r+Li DE   +l   ++ q ++l++lk L ++   ++v++
  KIR62645.1 163 RALIAMAVACQPRLLIADEPTTAL--DVTIQAQILELLKELVRDSGTALVMI 212
                 455677789*************99..6777889*********9999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 2172.43
//
Query:       KIR62646.1  [L=367]
Description: peptide ABC transporter ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-29  101.7   0.0      6e-29  101.3   0.0    1.2  1  ABC_tran      ABC transporter
      1e-16   61.1   1.3    1.8e-16   60.4   0.3    1.9  2  oligo_HPY     Oligopeptide/dipeptide transporter, C-terminal 
    0.00078   19.3   0.2       0.57    9.9   0.0    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0019   17.7   0.0      0.031   13.7   0.0    2.1  1  SMC_N         RecF/RecN/SMC N terminal domain
     0.0032   17.8   0.2     0.0079   16.5   0.2    1.7  1  AAA_22        AAA domain
  ------ inclusion threshold ------
       0.01   16.2   0.2      0.016   15.6   0.2    1.4  1  AAA_16        AAA ATPase domain
      0.013   15.3   0.0      0.024   14.4   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
      0.027   14.0   0.3        2.2    7.8   0.1    2.5  2  AAA_25        AAA domain
      0.043   13.2   0.0      0.067   12.6   0.0    1.3  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.051   13.5   0.0       0.08   12.9   0.0    1.3  1  RsgA_GTPase   RsgA GTPase
      0.057   13.8   0.1       0.12   12.8   0.0    1.5  1  AAA           ATPase family associated with various cellular 
       0.16   12.1   0.0       0.35   11.0   0.0    1.5  1  MMR_HSR1      50S ribosome-binding GTPase
       0.17   11.2   0.0       0.28   10.5   0.0    1.2  1  ATPase        KaiC
       0.17   11.8   0.1       0.41   10.6   0.1    1.5  1  AAA_5         AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.0   4.7e-32     6e-29       2     136 ..      36     187 ..      35     188 .. 0.89

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 4.7e-32
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TTSBHHHH............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx............xxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpeltvren............esde 83 
                 + v+l++ +g+++++vGe+G+GKStL ++l++l+ pt Ge+++dg +l++    +l+ +r+++++++q+  ++l+p+ +v++             ++d+
  KIR62646.1  36 DGVDLSIPRGKTYGLVGESGCGKSTLGRALLQLTPPTGGEVRFDGVELTTlaaGKLRTMRRRMQMIFQDpmSSLDPRQNVESIlteglqthgigtDRDD 134
                 789***********************************************9999***************98899999977776***********95666 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +   + ++l+ ++l+   +++ p+++SgGq+qr+ +aral+  p+l+++DEp 
  KIR62646.1 135 RRRIIGETLDAVGLPRWALSRYPHEFSGGQRQRIGIARALVLGPELIVADEPV 187
                 65555555555556666666679*****************************7 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.3   1.4e-19   1.8e-16       1      65 []     239     307 ..     239     307 .. 0.92
   2 ?   -2.0   0.0       4.1   5.2e+03      43      57 ..     312     329 ..     308     329 .. 0.65

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 1.4e-19
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd...klekikgeapslerldeGCpFapRCpfalee.C 65 
                 vE++ps++l +eplHPYT+aL+++vp +d+  +   +   ++g+ ps+ + ++GC+F++RCp a++  C
  KIR62646.1 239 VEEAPSDRLYSEPLHPYTRALMSAVPVPDPDVEdrrERILLAGDLPSPANPPSGCRFHTRCPWAQPTrC 307
                 8************************9999987766788889**********************998655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.1
   oligo_HPY  43 pslerlde...GCpFapR 57 
                 p+l+++     +C Fa+R
  KIR62646.1 312 PALREIGGsrvACHFAER 329
                 555555556668***998 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00045      0.57       3      22 ..      49      68 ..      48      90 .. 0.83
   2 !    7.5   0.0    0.0025       3.1     234     298 ..     157     219 ..      95     224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00045
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                +l+G  g+GKS+L +al  l
  KIR62646.1 49 GLVGESGCGKSTLGRALLQL 68
                69***************877 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0025
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 ++e+S G+++ ++++ al   +    l++ DEp + L+ ++++ ++ ll+el++  g   ++  H+
  KIR62646.1 157 PHEFSGGQRQRIGIARALVLGP---ELIVADEPVSALDVSIQAQVVNLLDELQDnLGLTYLVIAHD 219
                 6788999999988888888766...99**********************99998655555666555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.5e-05     0.031      28     213 ..      49     234 ..      28     239 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.5e-05
                 EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsel 126
                  +vG+ G+GKs l  A+   L   +  ++r + ++    + + k ++++ +++++f+++ ++l  +++  si ++  ++        +++ +++ + e 
  KIR62646.1  49 GLVGESGCGKSTLGRAL-LQLTPPTGGEVRFDGVELTTLA-AGKLRTMRRRMQMIFQDPMSSLDPRQNVESILTEGLQTHG---IGTDRDDRRRIIGET 142
                 57888888888888888.5566666768888877766665.7788888888888888887773332222222222222222...223333444445555 PP

                 HHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 127 lesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvgvtk 213
                 l  +g+ +        ++SgG+++ + +a  + +       l + De  +aLD +  ++v++ll+e ++n    ++vi+++  ++++ + +vgv+ 
  KIR62646.1 143 LDAVGLPRWalsryphEFSGGQRQRIGIARALVL----GPELIVADEPVSALDVSIQAQVVNLLDELQDNlgLTYLVIAHDLAVVKHISDVVGVMY 234
                 5555554434444444899999998887755433....3458999***********************9976789*****************9975 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   6.2e-06    0.0079      10      83 ..      50     124 ..      45     223 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.2e-06
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee..erpevvfvtlpsstsskdllrellralglelka..erlsseell.eale 83 
                 ++GesG+GK+tl r ll+  +     +    r + v+ t  + +++++++r++  +++++ ++  +r++ e +l e l+
  KIR62646.1  50 LVGESGCGKSTLGRALLQLTPP----TGgeVRFDGVELTTLAAGKLRTMRRRMQMIFQDPMSSldPRQNVESILtEGLQ 124
                 79****************9852....22444555555555555578888888888888777776545555555434444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.2   1.3e-05     0.016      25      63 ..      46      83 ..      32     216 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                    l+GesG+GKs+l r+ll +l+   g  +r + ++l
  KIR62646.1 46 KTYGLVGESGCGKSTLGRALL-QLTPPTGGEVRFDGVEL 83
                556699***************.67777444455555554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.9e-05     0.024      13      49 ..      36      72 ..      31      80 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-05
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllDAiqalLvpa 49
                dg +++i +  ++ l+G+sG GKSTl  A+  l  p+
  KIR62646.1 36 DGVDLSIPRGKTYGLVGESGCGKSTLGRALLQLTPPT 72
                66777786444999************88887765555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0017       2.2      30      50 ..      42      62 ..      35      98 .. 0.92
   2 ?    3.6   0.0     0.033        42     166     188 ..     196     218 ..     171     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0017
      AAA_25 30 lpagelallaGapgtGKttla 50
                +p+g++  l+G +g+GK+tl 
  KIR62646.1 42 IPRGKTYGLVGESGCGKSTLG 62
                899****************95 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.033
      AAA_25 166 galvealeriarrtgaavllvhH 188
                 +++v+ l+++++++g + l++ H
  KIR62646.1 196 AQVVNLLDELQDNLGLTYLVIAH 218
                 89********************9 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.2e-05     0.067       3      65 ..      26      88 ..      24     113 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.2e-05
  Mg_chelatase  3 kdvkGqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvag 65
                    v+G+ +a   +++++  g    lvG +G+GK+ l ++l +l pp   e  ++  +++++a 
    KIR62646.1 26 DRVVGHVKAVDGVDLSIPRGKTYGLVGESGCGKSTLGRALLQLTPPTGGEVRFDGVELTTLAA 88
                  678999999999999999999999**********************98887777777776665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.2e-05      0.08      98     121 ..      44      67 ..      30      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.2e-05
                  TTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallp 121
                  ++kt  lvG+SG GKStL  all+
   KIR62646.1  44 RGKTYGLVGESGCGKSTLGRALLQ 67 
                  468999************999876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     9e-05      0.12       3      52 ..      50     104 ..      48     119 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9e-05
                 EESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSSSTTHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakel..........gvefleisgsellskyvgesekkirelfke 52 
                 l+G  G+GK++l +a+ + +          gve+ ++ + +l+      + ++++++f++
  KIR62646.1  50 LVGESGCGKSTLGRALLQLTpptggevrfdGVELTTLAAGKLR-----TMRRRMQMIFQD 104
                 89*****************877666444444666666666666.....788888888886 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00027      0.35       3      21 ..      49      67 ..      47     105 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00027
                EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                ++vG +  GKStL +al++
  KIR62646.1 49 GLVGESGCGKSTLGRALLQ 67
                89***************96 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00022      0.28      16      37 ..      42      63 ..      25      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00022
      ATPase 16 ipegrvvlitGepGtGKtifal 37
                ip+g+++ ++Ge+G+GK++++ 
  KIR62646.1 42 IPRGKTYGLVGESGCGKSTLGR 63
                8******************996 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00032      0.41       4      23 ..      50      69 ..      49      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00032
                EE--SSSSHHHHHHHGGGGB CS
       AAA_5  4 LvGppGtgKselaerlaaal 23
                LvG++G+gKs+l + l++++
  KIR62646.1 50 LVGESGCGKSTLGRALLQLT 69
                8***************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2453.73
//
Query:       KIR62647.1  [L=110]
Description: hypothetical protein TK50_16775 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.55
# Mc/sec: 603.91
//
Query:       KIR62648.1  [L=219]
Description: hypothetical protein TK50_16780 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-09   36.9   0.0    3.6e-09   36.6   0.0    1.1  1  DUF1524   Protein of unknown function (DUF1524)


Domain annotation for each model (and alignments):
>> DUF1524  Protein of unknown function (DUF1524)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0     2e-13   3.6e-09      11     137 ..      82     207 ..      73     209 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 2e-13
     DUF1524  11 llnaklysssrkklryilakelesalreedeeegeakkltiEHilPqslaekwegagqedeekreelvndl..gNLtlltkslNsslsnkp...fleKr 104
                  l+++ ++ ++   + + a+++e + ++ +++++ ++ + i+H +P   a+ + ga+++d+ kr +++ndl    L++++ s N+s  +++   +++ +
  KIR62648.1  82 VLKRDGKDIRFS-GCNVVAGRWE-SVYDGRTFTDPSDVD-IDHTVPLANAWRS-GADEWDDAKRGDFANDLtrPQLIAVSASSNRSKGDQDpsqWKPAN 176
                 455555555554.3478888999.666666666653555.************9.*****************7779*********888866611156666 PP

     DUF1524 105 dlykksslrlnrklaekdewdeeaiearqeaLa 137
                  +y   + + ++++++k  w  +++ a+++aL 
  KIR62648.1 177 RSY--WCQYAEDWVTVKHHWRLTVTSAEKAALS 207
                 677..9***********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1581.63
//
Query:       KIR62649.1  [L=586]
Description: 2-isopropylmalate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-75  253.0   0.0    5.1e-75  252.4   0.0    1.2  1  HMGL-like    HMGL-like
    4.1e-29  101.2   1.2    6.7e-29  100.5   1.2    1.4  1  LeuA_dimer   LeuA allosteric (dimerisation) domain
  ------ inclusion threshold ------
       0.12   12.7   0.3        5.6    7.3   0.0    2.3  2  Sigma_reg_N  Sigma factor regulator N-terminal


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.4   0.0   8.5e-79   5.1e-75       2     264 .]      53     334 ..      52     334 .. 0.97

  Alignments for each domain:
  == domain 1  score: 252.4 bits;  conditional E-value: 8.5e-79
                 -EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B.....--EE-SSHHHHHHHHH....TT-SEEEEEE CS
   HMGL-like   2 vkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkar...ilalvrarekdikaavealkgagakrvhvfi 97 
                 ++++ ++LRDG+qal +++s e+k+++++ L+++g++eiEvgfp+as++d ++vr+++++  +++   i++l ++re++i++++e+l+ga+ ++vh+++
  KIR62649.1  53 PRWCAVDLRDGNQALIDPMSPERKRRMFQLLVQMGYKEIEVGFPSASQTDYDFVRQLIEQDLIPDdvtIQVLTQCREHLIDRTFESLRGAKRAIVHFYN 151
                 68**************************************************************8899******************************* PP

                 ES-HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-E........TTT-BTTTBS--HHHHHHHHHHHHHH......T-SEEEEEETTS---HHHHHHHHH CS
   HMGL-like  98 atselhlkaklkkdreevakkaeeavkaarslgkd........velsledasrtdleflaevveaaeea......GatriniaDtvGvltPneaaelis 182
                 +ts+l+++++++ dr+ + ++a+   ++ +++++         +e+s+e+ + t+le++++v+ a++e+         +in+++tv+++tPn++a++i+
  KIR62649.1 152 STSTLQRRVVFGLDRDGITDIATSGARLCQKYAEIhtpdteiyYEYSPESYTGTELEYALQVCSAVIEVidptpdRKLIINLPATVEMATPNVYADSIE 250
                 *********************999988888887767888*******************************998877789******************** PP

                 HHHHHS-...GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT-B----HHHHHHHHHHH CS
   HMGL-like 183 alkervk..dkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealgvdtgldlqklrsiaalv 264
                 ++++r++  d++ ls+H+Hnd+G++va++++++ aGadr++g+++G+Ger+Gn++l++l ++l  +g+d+ +d++++ +i++ v
  KIR62649.1 251 WMHRRLPrrDSLVLSLHPHNDRGTGVAAAELGLLAGADRIEGCLFGNGERTGNVDLVTLGLNLFSQGIDPMIDFSNIDEIKRAV 334
                 *******************************************************************************99876 PP

>> LeuA_dimer  LeuA allosteric (dimerisation) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   1.2   1.1e-32   6.7e-29       4     132 ..     456     584 ..     453     585 .. 0.79

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 1.1e-32
                 XXXXXXXXXXXXXX...XX--EEEEEEEEEEETTCEEEEEEEEEE.TTEEEEEEEE-SSHHHHHHHHHHHHHHHT-EEEEEEEE--TT-TT--EEEEEE CS
  LeuA_dimer   4 dedlealvkdelle...aeerlkleklqvssgedelstatvklevkdgeekeasaeGnGpvdAllnAlrkalgvdikLldYsvhaitegtdaqaevrVe 99 
                 +  +++++  ++l    +   l+l  +++ + ++ + +   ++ v +  +++ +a+GnGp+dA +nAl++ +gv +++ldY++ha+++g daqa+++Ve
  KIR62649.1 456 PGTMWDIFAGHYLVdhqSDPALTLAGYAIGTVDG-KVEIEARVGVGGSDTRSLTAVGNGPIDAYVNALES-VGVAVRVLDYHEHALSSGGDAQAAAYVE 552
                 5566777777776644233567777777766655.333333344424444899*****************.**************************** PP

                 EE--GGGEEEEEEEESSHHHHHHHHHHHHHHHH CS
  LeuA_dimer 100 levddgkkvsgvGvdsdiveASlkAlisalnrl 132
                 +e  dg++v+gvGvd++iv+AS+kA+ sa+nr+
  KIR62649.1 553 CE-VDGRTVWGVGVDANIVTASVKAVTSAVNRA 584
                 **.77788***********************95 PP

>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.016        98      50      82 ..     181     212 ..     177     214 .. 0.90
   2 ?    7.3   0.0   0.00093       5.6      39      67 ..     223     251 ..     209     258 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.016
  Sigma_reg_N  50 elaveitsPNvyvdsgsvsqsgffggeieyels 82 
                  + + ei +P++++   ++s++++ g+e+ey l+
   KIR62649.1 181 QKYAEIHTPDTEI-YYEYSPESYTGTELEYALQ 212
                  7899*********.9999*****9*****9987 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00093
  Sigma_reg_N  39 ekegnklrevlelaveitsPNvyvdsgsv 67 
                  +  ++kl+ +l+ +ve+++PNvy+ds ++
   KIR62649.1 223 PTPDRKLIINLPATVEMATPNVYADSIEW 251
                  55567889999*************99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4202.98
//
Query:       KIR62650.1  [L=187]
Description: nitroreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-16   59.9   3.2    8.3e-15   55.2   3.2    2.1  1  Nitroreductase  Nitroreductase family
    3.2e-05   23.6   0.0    0.00012   21.8   0.0    1.7  2  TM1586_NiRdase  Putative TM nitroreductase
    0.00097   19.5   1.4      0.058   13.8   0.1    2.5  2  HEAT_2          HEAT repeats


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   3.2   1.4e-18   8.3e-15       2     170 .]       9     157 ..       8     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 1.4e-18
                     HH--B---B-S--.--HHHHHHHHHHHHTS--GGG---EEEEEE..-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEEE CS
  Nitroreductase   2 rkRrSiRkFddep.vpkeelekileaarraPsagnlqpwrfvvv.qdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvli 94 
                     ++R S R+Fd+   ++++e +++leaar+aPsa n qpwrf +  +     ++ ++ +l +l++ +++ + +         l+  ++la  +v  
      KIR62650.1   9 AFRWSPRAFDPAAtLTADEAASLLEAARWAPSADNGQPWRFALGhR----DDETWKRILVNLPEDDQPWARHAA------ALLLGAHLAAGTVAG 93 
                     68*****************************************944....345555555555555555544433......255555555555555 PP

                     EE---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEEE- CS
  Nitroreductase  95 vivatldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliavGy 170
                                 a+++a   a+ d+g a+  l + AtalGl +  i gfd a   +++ l+lp + +++v++avG+
      KIR62650.1  94 G----------GAGRDAGTGAAYDLGQAVAHLTVQATALGLYVRQIAGFDHAG--LAADLDLPAGVRPLVVVAVGR 157
                     5..........59****************************************..********99*********95 PP

>> TM1586_NiRdase  Putative TM nitroreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0     2e-08   0.00012     158     188 ..      26      56 ..      20      73 .. 0.84
   2 ?   -0.7   0.0      0.14   8.5e+02      83     132 ..     107     157 ..      96     181 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2e-08
                     HHHHHHHHHHHTS--GGG----EEE.E-SSE CS
  TM1586_NiRdase 158 ewfkeileaarlAPsAlNqqpwrfelkddde 188
                     ++  ++leaar APsA N qpwrf l  +d+
      KIR62650.1  26 DEAASLLEAARWAPSADNGQPWRFALGHRDD 56 
                     667899*******************988765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.14
                     HHHHHHHHHHHHHHHTT-EEEEES--SST............T-S-EEEEE- CS
  TM1586_NiRdase  83 kaGYygeqlvLkltalGlgtcWvggtykk.kkakvelkkgeklvivIalGy 132
                      +G    +l  ++talGl    ++g  +   +a ++l+ g + ++v+a+G 
      KIR62650.1 107 DLGQAVAHLTVQATALGLYVRQIAGFDHAgLAADLDLPAGVRPLVVVAVGR 157
                     455556666677777777665555544443566677777777777777775 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   9.7e-06     0.058      23      57 ..      50      84 ..      24      99 .. 0.92
   2 !    4.6   0.1     0.007        42      46      66 ..     146     166 ..     137     179 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.7e-06
      HEAT_2 23 aLgrignpealpaLvellededpavRraaaeaLga 57
                aLg  ++++  ++Lv+l ed+ p+ R+aaa  Lga
  KIR62650.1 50 ALGHRDDETWKRILVNLPEDDQPWARHAAALLLGA 84
                89*******************************97 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.007
      HEAT_2  46 avRraaaeaLgaigdpealpa 66 
                  vR  ++ a g++gdp++lp 
  KIR62650.1 146 GVRPLVVVAVGRLGDPSSLPT 166
                 588899999999999988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 1186.80
//
Query:       KIR62651.1  [L=421]
Description: aspartate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-55  186.9   3.2    6.1e-55  186.4   3.2    1.2  1  AA_kinase  Amino acid kinase family
    1.7e-19   69.2   1.0    4.8e-10   39.0   0.1    2.8  2  ACT        ACT domain
    6.5e-16   57.9   0.3    7.7e-13   48.0   0.0    3.0  3  ACT_7      ACT domain


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.4   3.2     1e-58   6.1e-55       2     241 .]       3     231 ..       2     231 .. 0.97

  Alignments for each domain:
  == domain 1  score: 186.4 bits;  conditional E-value: 1e-58
                 EEEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--.HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTHG CS
   AA_kinase   2 rvVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGg.gsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaaglp 99 
                 +vV K GGss++++e+  ++r+ae i a++++g ++vvV+++ g +td+ll+l++++s+ +                + d+l++ ger+++alla +++
  KIR62651.1   3 LVVQKYGGSSVANAER--IKRVAERIVAARKAGDDVVVVVSAmGDTTDELLDLANQVSPLPPG-------------RELDMLLTAGERISMALLAMAIH 86 
                 69**************..***********************************8888888887.............344******************** PP

                 EEEE-GGGTCEECCCE.....HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTE....EEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTT CS
   AA_kinase 100 avglsaaaldateagr...degsdgnvesvdaeaieelleagvvpvltgfigldeege....lgrgssDtiaallAealgAdkliiltdVdGVydadpk 191
                 + g+ a++++ ++ag    +++ ++++  v+   ++  l++g v++++gf+g++++ +    lgrg+sDt+a++lA+al+Ad ++i+tdVdG+++adp+
  KIR62651.1  87 NLGYEARSFTGSQAGVittSVHGKARIIDVTPGRLKGALDEGAVVIVAGFQGVSQDTKdvttLGRGGSDTTAVALAAALHADVCEIYTDVDGIFTADPR 185
                 *************************************************************************************************** PP

                 TCCTTCECCEEEHHHCHHCSSS.TTTHHHHCHHHHHHHHHCTT-EEEEEE CS
   AA_kinase 192 kvpdarllpeisvdeaeesaselatgGmkvkhpaalaaarrggipvvItn 241
                 +vp+ar ++ ++++e++e    la  G+kv+h++ ++ arr+g p+++++
  KIR62651.1 186 IVPNARHIRHVTYEEMLE----LAACGAKVLHLRSVEYARRAGLPIHVRS 231
                 ******************....*************************985 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.1   8.1e-14   4.8e-10       3      65 ..     268     329 ..     266     331 .. 0.87
   2 !   28.2   0.1     2e-10   1.2e-06       3      63 ..     350     402 ..     348     406 .. 0.80

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 8.1e-14
                 EEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTT CS
         ACT   3 lrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkl 65 
                  +vgvpD+PG++ar+f ++a + iNid+i q  s ++  g++++ ++    d +++++al k+
  KIR62651.1 268 TIVGVPDEPGAAARIFDTVASAEINIDMIVQNVSTEG-TGRTDISFTLPKTDGPTAMAALSKI 329
                 578*********************************9.8888888888888888888888775 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 2e-10
                 EEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHH CS
         ACT   3 lrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealk 63 
                 +  g++ +PG++a +f+al+ +g+Ni++i++++ +          +v  + dl+++++a++
  KIR62651.1 350 IGAGMRSHPGVAAGFFAALGAAGVNIEMISTSEIRV--------SVVCRDTDLDKAVRAIH 402
                 5668999***************************65........56666666666666665 PP

>> ACT_7  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.7   9.9e+03      34      46 ..     223     235 ..     222     237 .. 0.84
   2 !    6.6   0.0    0.0011       6.6       7      41 ..     265     296 ..     260     305 .. 0.90
   3 !   48.0   0.0   1.3e-16   7.7e-13       3      65 .]     341     403 ..     339     403 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.7
                 TT---EEEE-SS- CS
       ACT_7  34 agIsifqiStyrt 46 
                 ag +i + S+y t
  KIR62651.1 223 AGLPIHVRSSYST 235
                 7899999999998 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0011
                 EEEEE-S-.---SS--HHHHHHHHHHTTT---EEE CS
       ACT_7   7 iklsvvgsglpfdvtGivaklaspLaeagIsifqi 41 
                 +k+++vg     d +G +a+++   a a I+i +i
  KIR62651.1 265 AKITIVGV-P--DEPGAAARIFDTVASAEINIDMI 296
                 79999999.4..8*******************887 PP

  == domain 3  score: 48.0 bits;  conditional E-value: 1.3e-16
                 EEEEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE.-SS-EEEEEEGGGHHHHHHHHHH CS
       ACT_7   3 edgwiklsvvgsglpfdvtGivaklaspLaeagIsifqiS.tyrtdyiLVpeedlekAveaLhe 65 
                 +d++ k+s++g+g+++ ++G++a+ +++L +ag++i +iS +++  +++ ++ dl+kAv+a h+
  KIR62651.1 341 DDHVGKVSLIGAGMRS-HPGVAAGFFAALGAAGVNIEMIStSEIRVSVVCRDTDLDKAVRAIHD 403
                 68899***********.*********************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3095.15
//
Query:       KIR62652.1  [L=353]
Description: aspartate-semialdehyde dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-45  153.7   0.0    7.3e-45  153.3   0.0    1.2  1  Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation dom
    2.6e-27   95.6   0.0    4.3e-27   95.0   0.0    1.4  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
  ------ inclusion threshold ------
      0.093   12.3   0.2       0.26   10.9   0.1    1.8  2  Gp_dh_C          Glyceraldehyde 3-phosphate dehydrogenase, C-


Domain annotation for each model (and alignments):
>> Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.3   0.0   1.2e-48   7.3e-45       2     184 .]     141     333 ..     140     333 .. 0.96

  Alignments for each domain:
  == domain 1  score: 153.3 bits;  conditional E-value: 1.2e-48
                      HHHHHCTT.EEEEEEEEEEEGGGCHHHHHHHHHHH.............HHHHHHSTTS.CTTTSSHHTTSEESTCSTBTTTTCHCBHHHHHHHH CS
  Semialdhyde_dhC   2 kPLldalgelervivatyqavSGaGkkgvreLlkq.............vaelqrsdeakpgvfgvpiagNlipyidkeedkgepetreelkava 82 
                      +PL+ + ++l++++ a+yqavSGaG++gv++L+ q               +  ++   + g f +p+a N++p++++  d g   + eelk+++
       KIR62652.1 141 APLHRE-YGLRELVLASYQAVSGAGQAGVDALHLQlgkiagdrvlgsrPGDVRQAVGDELGPFPAPLALNVVPWAGSLADGG--WSSEELKMRN 231
                      8****9.89*************************************986677777778999****************77777..899******* PP

                      HHHHHCTESC.SEEEEEEEESBSSEEEEEEEEEESSSHHHHHHHHHHHHCSTTEEEEESS.HCHHSSHHHHTTCSSSEEEEEEEEETTCTTEEE CS
  Semialdhyde_dhC  83 etkkilefte.kvsatcvrVPvlrGhseavtiklklkdveveeveellaaapevkvvvne.eedrPtpaavaggtnsvsVGRirkdemgdeglk 174
                      e++kil+ ++ kvsatcvrVPv++Ghs av++ + +++v++e ++e+l++ap+v +v+++  +++P+p +++g t+   VGRir   ++++ l+
       KIR62652.1 232 ESRKILGLPDlKVSATCVRVPVVTGHSVAVHAVF-ATEVDAEGAREALRNAPGVILVDDPaAGEFPMPIDAVG-TDPSWVGRIRRAVDDPRALD 323
                      **********************************.5************************************9.9******************* PP

                      EEEEEETTTT CS
  Semialdhyde_dhC 175 lvvvgDNllk 184
                      l+v+gDNl+k
       KIR62652.1 324 LFVTGDNLRK 333
                      ********97 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.0   7.2e-31   4.3e-27       2     120 ..       7     120 ..       6     121 .. 0.96

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 7.2e-31
                     EEEETTTSHHHHHHHHHHHC.TSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTSEEEE CS
  Semialdhyde_dh   2 vaivGatGyvGqellrlLee.hpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapklaeagvkviD 95 
                      a+vGatG+vG+++ +lL++    + +++l++s+rs G++++ +      g++l+v + ++e++++vd++++ +p +vs+e+ap ++++g++ +D
      KIR62652.1   7 LAVVGATGAVGTVMCELLSSrRDVWGEIRLIASERSVGRRVRCR------GEELTVGALTPEAFDGVDVAMFDVPDDVSAEWAPVAVSRGAVAVD 95 
                     69******************888899****************99......88******************************************* PP

                     SSSTTTTSTTSEBE-HHHHGGGGGG CS
  Semialdhyde_dh  96 lssdfRlkddavyvlpevnreaikk 120
                     +s++fR++ d+++v+pe+n+e++++
      KIR62652.1  96 NSGAFRMDRDVPLVVPEINPEQVRN 120
                     *********************9875 PP

>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   4.4e-05      0.26      70     110 ..     242     282 ..     235     290 .. 0.90
   2 ?   -2.8   0.0      0.69   4.1e+03      19      44 ..     309     335 ..     300     341 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.4e-05
                 TTEEEEEEEESSSSEEEEEEEEEESSTS-HHHHHHHHHHHH CS
     Gp_dh_C  70 gkldglAvrVPtpnvsvvdlvvelekevtveevnaalkeaa 110
                  k++++ vrVP+++++ v +   ++ ev +e   +al++a+
  KIR62652.1 242 LKVSATCVRVPVVTGHSVAVHAVFATEVDAEGAREALRNAP 282
                 578999*******************************9997 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.69
                 EEEEEECTTTSBSSSS--..SSTTTTS CS
     Gp_dh_C  19 mttvhaytndQkllDgps.kkdlrrar 44 
                 +  ++++++d + lD      +lr++ 
  KIR62652.1 309 VGRIRRAVDDPRALDLFVtGDNLRKGA 335
                 556999999999999887455667665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2379.89
//
Query:       KIR62653.1  [L=476]
Description: diguanylate cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-29  101.0   0.0    1.4e-28   99.7   0.0    1.7  1  GGDEF     Diguanylate cyclase, GGDEF domain
    1.5e-11   44.7   7.4      1e-07   32.3   0.2    2.8  3  GAF_2     GAF domain
    3.6e-09   37.4   0.8    3.6e-07   30.9   0.2    2.4  2  GAF       GAF domain
    1.6e-06   28.5   0.7     0.0006   20.2   0.1    3.3  3  GAF_3     GAF domain
    1.6e-05   25.1   5.5      2e-05   24.8   1.1    2.9  2  GGDEF_2   GGDEF-like domain


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.0   3.8e-32   1.4e-28       4     160 ..     332     469 ..     329     470 .. 0.80

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 3.8e-32
                 -CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHHHHH CS
       GGDEF   4 DslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaaelaer 102
                 D+lTgL     +     q+++ra  +  ++a+l +d+d Fk++ndtyGh++GD++L  +a++L+ +lr++d ++R+ggdeF+ +++  + e   e+ ++
  KIR62653.1 332 DPLTGLRHTGPFG----QRIARA--TPGRTALLAIDVDGFKAVNDTYGHQAGDRLLVGLARALEAALRQGDELYRIGGDEFVAVIEVNRPE---EAVRI 421
                 5666665444443....444555..357899*****************************************************9877755...44444 PP

                 HHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSS CS
       GGDEF 103 irrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagrn 160
                 ++rl ++ +       +    tis+G+al   + ge++e+ l++Ad+aly++K++gr+
  KIR62653.1 422 AERLAEAARG------TG--RTISVGVALP--RPGESPEQTLRRADQALYAVKRQGRD 469
                 4444444443......23..489****998..5***********************96 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.2   2.9e-11     1e-07      32     133 ..      49     148 ..      19     151 .. 0.73
   2 !   16.2   0.4   2.8e-06    0.0099       6     137 ..     178     316 ..     173     317 .. 0.79
   3 ?   -1.9   0.1       1.1   3.8e+03     101     131 ..     403     427 ..     384     441 .. 0.72

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 2.9e-11
                 S-EEEEEEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT--EEEEEE-T.TS---EEEEES.........--HHHHHHH CS
       GAF_2  32 gglrlaawgeaeeefgaaldrplgeglvgealrtgrpvilndleedpdkkglpaghaglrsflavPlis.egrvvGvlnlyankppa...fdeedlelL 126
                 ++lr +a+++a   f      p+ +g+vg+++++g+p  ++d+++dpd  + +   +++ ++++vP+++  gr++Gvl l+ ++p +   + e+  +++
  KIR62653.1  49 DRLRCVAATGAWQVFATV---PPKAGVVGRVYASGEPATVADVAADPDYLPVR---PDVTAEVCVPVLDpAGRPIGVLDLQWSGPVElgpWRETAERVA 141
                 555555555554444333...57899*******************99988887...************************6555555444778888887 PP

                 HHHHHHH CS
       GAF_2 127 eelaeqi 133
                   l++ i
  KIR62653.1 142 ARLGARI 148
                 7777665 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.8e-06
                 HHHHHHHHHHHHS.S..EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B--......-TT.HHHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT--EEEE CS
       GAF_2   6 elldlvldelvel.gaalgyillvdddgglrlaawgeaeeefgaaldrpl......geg.lvgealrtgrpvilndleedpdkkglpaghaglrsflav 96 
                 +l+ +++ +++e+ + +++++ll  +++g rl a+++a++e+ ++++  l      +    v +a r+g    l    + p     p+++ag+r+ +av
  KIR62653.1 178 DLMTAAICAAREVsTLSAAVLLLSGGGRGPRLGAPTGAPGELESRIRAELteagapALHrMVTRAHRHGAGYTLGEAGHPPTEEYRPLADAGVRTLVAV 276
                 788889999999966888999998888889999999999999999988666333232222455777778888888877788888888************ PP

                 EE-T.TS---EEEEES......--HHHHHHHHHHHHHHHHHH CS
       GAF_2  97 Plis.egrvvGvlnlyankppafdeedlelLeelaeqiaiai 137
                 P+   +g   Gvl ++ ++  + d++ + l+e+la+q+++ +
  KIR62653.1 277 PVGPpDG--GGVLLVADERLLRPDPTTVNLMELLAGQAWTCL 316
                 **33343..48***99999999*****************877 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.1
                 TS---EEEEES......--HHHHHHHHHHHH CS
       GAF_2 101 egrvvGvlnlyankppafdeedlelLeelae 131
                 +++ v+v+++  n+p    ee ++++e lae
  KIR62653.1 403 GDEFVAVIEV--NRP----EEAVRIAERLAE 427
                 4556777776..222....566777776665 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.2     1e-10   3.6e-07       5     129 ..      25     148 ..      22     150 .. 0.78
   2 ?    4.6   0.0     0.013        47      70     131 ..     256     314 ..     183     316 .. 0.71

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1e-10
                 HHHHHHHHHHHHHTESEEEEEEEEETTEEECEEEEECC...EEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEE.TT CS
         GAF   5 lldtvveelrellgadrvalylpdydGlhydipqasrw...lfmkngrgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPlvn.dg 99 
                 +++ +v  l+++  a   +l++  +d l+  + +  +w      ++  g++g+v+a+g+p +++d+++dp++++        ++ + + ++vP+++  g
  KIR62653.1  25 ACQWTVTALARYAPATISVLLQ-VRDRLRC-VAATGAWqvfATVPPKAGVVGRVYASGEPATVADVAADPDYLP-------VRPDVTAEVCVPVLDpAG 114
                 6677777777777776666654.3333322.333333444455566788999**********************.......579*************** PP

                 EEEEEEEEEESSS....CSHHHHHHHHHHHHHHH CS
         GAF 100 elwGllvlhnpsp....pftreelellqvladqv 129
                 + +G+l+l    p    p+++ +++++  l++++
  KIR62653.1 115 RPIGVLDLQWSGPvelgPWRETAERVAARLGARI 148
                 **********9999999****9999988887776 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.013
                 STTHHTTHHHHHHHHTTESEEEEEEEEE.TTEEEEEEEEEESSS.CSHHHHHHHHHHHHHHHHH CS
         GAF  70 dprfaqynrrdllenmgirsslvvPlvn.dgelwGllvlhnpsp.pftreelellqvladqvav 131
                 +p     ++ + l+  g+r++++vP+   dg   G+l + +++  + ++  ++l++ la q+  
  KIR62653.1 256 HPPT---EEYRPLADAGVRTLVAVPVGPpDGG--GVLLVADERLlRPDPTTVNLMELLAGQAWT 314
                 2222...45668999***********954444..888888855543389999999999999876 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   1.7e-07    0.0006       5     101 ..      25     123 ..      21     149 .. 0.76
   2 ?    2.6   0.0     0.044   1.6e+02      78     123 ..     268     312 ..     177     318 .. 0.55
   3 ?    2.2   0.0      0.06   2.1e+02      30      69 ..     402     438 ..     395     468 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.7e-07
       GAF_3   5 llekllkllvkllgaevgalllldedgnklqvaagwdgkpalsesldedsalarralssgevvsepsfaeedg.....lpdraalavPLvagr.qviGv 97 
                  ++ ++ +l++   a++++ll+++ d  +l+ +a++++ +++  +++ +  +  r+++sge+++++++a+ +       + +a ++vP+ ++  ++iGv
  KIR62653.1  25 ACQWTVTALARYAPATISVLLQVR-D--RLRCVAATGAWQVF-ATVPPKAGVVGRVYASGEPATVADVAADPDylpvrPDVTAEVCVPVLDPAgRPIGV 119
                 56778899999999******9999.5..57777777333444.377799999*************9998865443333444888*************** PP

       GAF_3  98 lala 101
                 l l+
  KIR62653.1 120 LDLQ 123
                 9774 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.044
       GAF_3  78 lpdraalavPLvagrqviGvlalastkprafdaedlelleslArqi 123
                    r ++avP+  ++   Gvl++a  +    d++++ l+e lA+q+
  KIR62653.1 268 AGVRTLVAVPVGPPD-GGGVLLVADERLLRPDPTTVNLMELLAGQA 312
                 444777888887755.359999999999999999999999999998 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.06
       GAF_3  30 dgnklqvaagwdgkpalsesldedsalarralssgevvse 69 
                 +g+++++++     ++++e++++++ la +a ++g  +s+
  KIR62653.1 402 GGDEFVAVIEV---NRPEEAVRIAERLAEAARGTGRTISV 438
                 56677677766...9999999*999999999999999887 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.15   5.4e+02      73      99 ..     133     158 ..     109     174 .. 0.79
   2 !   24.8   1.1   5.6e-09     2e-05      31     113 ..     374     462 ..     346     464 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.15
     GGDEF_2  73 aeallerlarrlgglsvriGiGspveg 99 
                 +++ +er+a+rlg+ ++++  G+p+e 
  KIR62653.1 133 WRETAERVAARLGA-RITALGGPPAET 158
                 44889999999999.999999999875 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 5.6e-09
     GGDEF_2  31 eedaerllraleealral..gpdalvavrgdrlvlllpaedeedaeallerlarrlgg..lsvriGiGspv..eglaglrrSyreArrA 113
                 +++++rll  l++al+a+  + d l+ + gd++v+++ ++ +e+a +++erla++ +g  +++++G+  p   e++++  r   +A+ A
  KIR62653.1 374 HQAGDRLLVGLARALEAAlrQGDELYRIGGDEFVAVIEVNRPEEAVRIAERLAEAARGtgRTISVGVALPRpgESPEQTLRRADQALYA 462
                 3366677777777775555689**********************************999977777777655115577776666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3083.98
//
Query:       KIR62654.1  [L=259]
Description: 3',5'-cyclic-nucleotide phosphodiesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-18   66.9   0.2    5.6e-18   66.2   0.2    1.3  1  Metallophos    Calcineurin-like phosphoesterase
    1.8e-10   41.2   0.0    4.1e-10   40.1   0.0    1.6  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
  ------ inclusion threshold ------
      0.023   15.0   0.7       0.13   12.5   0.0    2.2  2  GGDEF_2        GGDEF-like domain


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.2   9.4e-22   5.6e-18       2     204 .]       2     193 ..       1     193 [. 0.71

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 9.4e-22
                  EEEEEESBTB...TTCCTHHHHHHHHHHHH..HHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHH.TSEEEEEC-TTSCHHHHHHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHl...algggqlddllkllddl..lreekpdlvllaGDlvdrgdlekellellaalvky.pipvylllGNHegfeeellnkygylgifse 93 
                   i++++D+Hl    l+ ++ ++l ++l ++  lr ++pd v+++GDl+++g++e+ ++ l + l+++ p+pv+l++GNH+    + +++ + +g +++
   KIR62654.1   2 LIAQLSDTHLttgPLAAEPAAALHRALGRVlgLR-PRPDHVVVTGDLTEHGSPEE-YVAL-RDLIARfPVPVHLVAGNHD----DRESLLDIFGGTPH 92 
                  599********99556666666667776664344.59**************9999.5555.444444499**********....77777555555544 PP

                  HHEHHHCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESS.......CSSSCSCCH CS
  Metallophos  94 pwrsdaevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsply.......rgsgylfgd 181
                  +    ++++ ++ + +  +   ++++l+  sp++              +a + g     wl ++ +r+++ + +v  H+p+        +g   l gd
   KIR62654.1  93 LG---GGYLPHYAVEQ-PDA--TIVVLDSVSPGE--------------PAGRLGpeqLAWLDETLARRPGLPAVVCLHHPPVpvglpylDGMRLLDGD 170
                  44...33334444433.222..344444443333..............33333344489999988888888888888888888*************** PP

                  HHHHHHHHHTTESEEEEESSSSE CS
  Metallophos 182 ealedllkkygvdlvisGHtHvy 204
                  + +  +   + v  v+ GH+H++
   KIR62654.1 171 DLATVVAAHPHVVRVVAGHVHRP 193
                  ****99***************85 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   6.9e-14   4.1e-10       1     132 [.       1     196 [.       1     227 [. 0.71

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 6.9e-14
  Metallophos_2   1 MklaiiSDlH........snldaleavlealke..vgvdaiihaGDl.eeeepe...vleellela..pvlaVrGNnD.................. 62 
                    M +a +SD+H        +  +al ++l ++ +   ++d+++++GDl e ++pe   +l++l++++  pv+ V GN+D                  
     KIR62654.1   1 MLIAQLSDTHlttgplaaEPAAALHRALGRVLGlrPRPDHVVVTGDLtEHGSPEeyvALRDLIARFpvPVHLVAGNHDdreslldifggtphlggg 96 
                    99***********9999844444444444433311348**********999998556677777777************999888888888888888 PP

  Metallophos_2  63 ..........eevveedvlreaaelgtdl.p.eeaelel..agek....vlliHgdpl............gvkdalaellkeaeegsd.vvvcGHt 127
                              +  ++   + ++ e +++l p + a+l+   a++     v  +H+ p              + d+la ++ +   ++   vv+GH 
     KIR62654.1  97 ylphyaveqpDATIVVLDSVSPGEPAGRLgPeQLAWLDEtlARRPglpaVVCLHHPPVpvglpyldgmrlLDGDDLATVVAA--HPHVvRVVAGHV 190
                    8888888664222444444445555555543233444412322225556888888766**********99999999999999..6666689***** PP

  Metallophos_2 128 Hvp.ev 132
                    H+p +v
     KIR62654.1 191 HRPvTV 196
                    **9544 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.2e-05      0.13       9      60 ..      26      80 ..      14      94 .. 0.80
   2 ?    0.5   0.1      0.11   6.7e+02      74     104 ..     176     207 ..     104     218 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
     GGDEF_2  9 lerarrlgldldgpyvvvvielee.daerllraleealral..gpdalvavrgdr 60
                ++ +r lgl+++ ++vvv  +l e  + + + al+++++++    + ++++++dr
  KIR62654.1 26 RALGRVLGLRPRPDHVVVTGDLTEhGSPEEYVALRDLIARFpvPVHLVAGNHDDR 80
                344699***************977666679***********76666666777776 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.11
     GGDEF_2  74 e....allerlarrlgglsvriGiGspveglaglr 104
                       +++ +a ++++ +v++G  ++v  l+ ++
  KIR62654.1 176 VaahpHVVRVVAGHVHR-PVTVGFAGTV--LTTAP 207
                 12333577777777777.7777777766..55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2047.56
//
Query:       KIR62655.1  [L=210]
Description: histone deacetylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1596.58
//
Query:       KIR62656.1  [L=166]
Description: hypothetical protein TK50_16835 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1246.52
//
Query:       KIR62657.1  [L=219]
Description: hypothetical protein TK50_16840 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-10   41.5   0.0    1.3e-10   41.3   0.0    1.1  1  DUF1524   Protein of unknown function (DUF1524)
     0.0033   17.3   0.6      0.012   15.6   0.6    1.9  1  HNH_4     HNH endonuclease


Domain annotation for each model (and alignments):
>> DUF1524  Protein of unknown function (DUF1524)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   1.5e-14   1.3e-10      42     138 ..     104     203 ..      72     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.5e-14
     DUF1524  42 eegeakkltiEHilPqslaekwegagqedeekreelvndl...gNLtlltkslNsslsnkpfleKrdlykk.sslrlnrklaekdewdeeaiearqeaL 136
                   +   + +i+H++P   a+++ ga++++  +r+ ++ndl     L+++t+ +N+s  +++ +   ++y++ ++ ++n+++a+k++w  ++ +a+++aL
  KIR62657.1 104 YWTATGDVDIDHMVPLAEAWDS-GARNWSTSRRQAYANDLsdsRPLVAVTDNVNQSKGDQDPATWMPSYSSaRCRYVNEWVATKTRWRLTVDTAEKDAL 201
                 222222334*************.*****************77778************************999**************************9 PP

     DUF1524 137 ak 138
                 + 
  KIR62657.1 202 TS 203
                 86 PP

>> HNH_4  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.6   1.3e-06     0.012      16      54 ..     108     164 ..     100     165 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-06
                 ...SEEEESSTTTT---...................BSGGGEEEES-GGGGTSSSSSS CS
       HNH_4  16 tkeydiDHilPrsrskd...................DsvsNkVLvlrdaNqeKsnrtP 54 
                 t  +diDH++P +  +d                   Ds   +V v+ ++Nq K+++ P
  KIR62657.1 108 TGDVDIDHMVPLAEAWDsgarnwstsrrqayandlsDSR-PLVAVTDNVNQSKGDQDP 164
                 6789************************99999886664.599999999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1448.02
//
Query:       KIR62658.1  [L=78]
Description: hypothetical protein TK50_16845 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       886  (0.0494171); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 618.47
//
Query:       KIR62659.1  [L=90]
Description: hypothetical protein TK50_16850 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 623.72
//
Query:       KIR62660.1  [L=112]
Description: hypothetical protein TK50_16855 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 923.84
//
Query:       KIR62661.1  [L=471]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-06   28.5   0.0    1.5e-06   28.5   0.0    3.0  3  HTH_31    Helix-turn-helix domain
     0.0013   18.8   0.0     0.0044   17.0   0.0    1.9  1  HTH_3     Helix-turn-helix


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   1.6e-10   1.5e-06       2      61 ..      27      85 ..      26      88 .. 0.89
   2 ?   -1.8   0.1      0.46   4.1e+03      18      26 ..     232     240 ..     223     250 .. 0.73
   3 ?   -3.9   0.5         2   1.8e+04       4      14 ..     429     439 ..     427     445 .. 0.65

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1.6e-10
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaer 61
                +G l r+     G sq   ++++g+ + ++sr+  Gr  + s +vle++a++++ ++  r
  KIR62661.1 27 IGGLFRWIASLTGASQSRIGAAVGLEQGYISRIVAGRK-VTSIDVLERIADGCRMPDQAR 85
                5677777777789*************************.7***************98755 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.46
      HTH_31  18 eevAerlgv 26 
                 +e+A+++g+
  KIR62661.1 232 AELAQLAGW 240
                 467777776 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 2
      HTH_31   4 alLralReraG 14 
                 a+Lr +R+ + 
  KIR62661.1 429 AQLRSARAVRY 439
                 67777776554 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.9e-07    0.0044      11      48 ..      41      78 ..      39      81 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.9e-07
                HHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHH CS
       HTH_3 11 sqeeLAeklGvsrstisriEnGernPsletlkklakaL 48
                sq  + +++G+ + +isri  G+   s+++l+++a+ +
  KIR62661.1 41 SQSRIGAAVGLEQGYISRIVAGRKVTSIDVLERIADGC 78
                799999*****************************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3710.30
//
Query:       KIR62662.1  [L=188]
Description: NUDIX hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-21   74.5   1.7      1e-20   74.1   1.7    1.2  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   1.7   5.8e-25     1e-20       3     115 ..      49     158 ..      47     170 .. 0.84

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 5.8e-25
                 EEEEEEEEEETTSEEEEEEESSSSTTT..EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSGCSST CS
       NUDIX   3 rravgvvllnekgevLlvrrskkpfpg..WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfleevegelepn 99 
                 +r++ v +l++++++Ll+rr++  f+   WelPgG v++ E p+++A+RE+eEEtG++++ +e l +++ +  +      + e l+++++e+e+  +p 
  KIR62662.1  49 PRSAMVAVLDDRERLLLMRRHRFVFDRwvWELPGGYVDDQEQPAQCAVREVEEETGWRPQAVEPLLSFQPWVGTA-----DAENLLFLAREAEHIGAPV 142
                 57888999999999*******8888887779****************************9999998554444433.....5566667779999999999 PP

                 STTTEEEEEEEEHHHH CS
       NUDIX 100 denevsevrwvpleel 115
                 d ne ++v w++l+e+
  KIR62662.1 143 DVNEAEQVAWISLNEA 158
                 ***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1425.74
//
Query:       KIR62663.1  [L=82]
Description: hypothetical protein TK50_16870 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 577.29
//
Query:       KIR62664.1  [L=519]
Description: plasmid replication initiator protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3566.83
//
Query:       KIR62665.1  [L=405]
Description: integrase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-16   60.9   0.0    3.6e-16   59.4   0.0    1.7  2  Phage_integrase  Phage integrase family
    8.7e-11   41.9   0.0    1.3e-10   41.3   0.0    1.3  1  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.24   2.1e+03     101     121 ..     105     128 ..      47     149 .. 0.60
   2 !   59.4   0.0     4e-20   3.6e-16       4     169 ..     205     388 ..     202     391 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.24
                      T...TSSB--HHHHHHHHHHHHHH CS
  Phage_integrase 101 k...rgkplsrqtvrkafkravee 121
                          r ++l+ ++v+++++++++ 
       KIR62665.1 105 LggkRLDRLQVRDVQTWVNEVART 128
                      144466677777777777777665 PP

  == domain 2  score: 59.4 bits;  conditional E-value: 4e-20
                      HHHHHHHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEE...........EEECSSSSE.EEEECT..HHHHHHHHHH CS
  Phage_integrase   4 tedeverllaaleeslkirdklllellyetGlRisEllsLrvkdldlengvilvh...........eregKgske.ravpls..eealellkel 83 
                      t+de++r+l+ ++  +    +++  l++  GlR +E+l+L+ + +dl+ g++ +             re+K++++  ++pl+   +a+  l+++
       KIR62665.1 205 TSDEARRFLESARA-DRDPLYAAYVLILVLGLRKGEVLGLTGDAVDLAAGEVSIGwqlqrvggrllHRETKTQTSdATLPLPdiCAAALDLRQQ 297
                      68999999999999.777777888888899************************************9999999887999**9554444455555 PP

                      HHHH.....CHCCTTTSBSSBETTSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHH.HHHHCC CS
  Phage_integrase  84 lska.....leeaeksellfaskrgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssistt.qiYthv 169
                        ka       + ++s llf  + g p+  +++++ + + + +ag+  ++t H+ R+++at L+   v +rv++++l H+++s t +iY ++
       KIR62665.1 298 ARKAdrdqaGIAWQGSPLLFTTRYGTPIEPRNFNRSWDARCARAGVR-RITVHDARRTCATLLVDLDVHPRVIMQVLRHAEVSATmEIYSQA 388
                      55554333333344555******************************.*************************************9999876 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   1.5e-14   1.3e-10       1      56 [.      68     124 ..      68     126 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.5e-14
                      ..HHHHHHHHHH.HHHHH-HHHHHHHHHHHTTTHHHHTTSSBGGG--HHHHHHHHHH CS
  Phage_int_SAM_3   1 tFsefleeWlee.ykprvkesTyatyksiiknhIlPyFgniklkkItpadiqkfqne 56 
                      t++++l +W  e  +p++ + T+aty+ i++ +++P +g ++l+ ++ +d+q+++ne
       KIR62665.1  68 TLGDYLTYWHREvVRPNLAPLTCATYETILRLYVIPGLGGKRLDRLQVRDVQTWVNE 124
                      899******999788*****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3034.05
//
Query:       KIR62666.1  [L=297]
Description: metallophosphoesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-08   34.6   0.0    3.8e-08   34.1   0.0    1.2  1  Metallophos    Calcineurin-like phosphoesterase
    2.5e-07   31.0   0.0    8.2e-07   29.4   0.0    1.7  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   4.3e-12   3.8e-08       1     202 [.      49     231 ..      49     233 .. 0.70

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 4.3e-12
                  EEEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEEST.SSSSSHHHHHHHHHHHHHHHHTSEEEEEC-TTS.......CHHHHHHHHHHHHHH CS
  Metallophos   1 lrilvigDlHlalgggqlddllkllddllreekpdlvllaGD.lvdrgdlekellellaalvkypipvylllGNHe.......gfeeellnkygylgi 90 
                  lr+l+++DlH        ++ ++++  l++  +pdlv+++GD   + g ++  +l+ la+l+++  p +++ G  +       +       ++ y+  
   KIR62666.1  49 LRVLHLSDLH---MMPEQRRKQDWVASLAAL-DPDLVVVTGDnMAHPGAVPG-VLRALAPLLDF--PGAFVFGSNDytgpvlkN-------PFSYFLP 132
                  69********...444444445555555555.**********7777789999.**********6..99********55444441.......4443333 PP

                  H.......HHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCCHHHHHHHHHHTTCSEEEEEESSESSCSSSCSCC CS
  Metallophos  91 f.......sepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepgdewlkdlekrekadwvivlgHsplyrgsgylfg 180
                  +         p+    +vf +   a+l +   ++ l  Gg  +el     +  ++ +++ ++             + a+  i+l+Hsp +        
   KIR62666.1 133 DreysegaELPYDELRDVFTGAGWADLNNA--RTTLKAGGrLIEL--VGVDDPHIARDDYPSVA-------GPVSAAAELSIALSHSPEP-------- 211
                  34444544777777799**99999999999..9999999943333..22223333333333332.......45556667999********........ PP

                  HHHHHHHHHHTTESEEEEESSS CS
  Metallophos 181 dealedllkkygvdlvisGHtH 202
                    a+ d     g  l + GHtH
   KIR62666.1 212 --AVLDEMAADGFELLLAGHTH 231
                  ..66666777889999*****9 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   9.2e-11   8.2e-07       2     142 ..      50     246 ..      49     271 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 9.2e-11
  Metallophos_2   2 klaiiSDlH..snldaleavlealkevgvdaiihaGDleeeepevleellela......pvlaVrGNnD........................... 62 
                    +++++SDlH   + ++ + +++ l++ ++d+++++GD + ++p ++  +l+ +      p   V+G nD                           
     KIR62666.1  50 RVLHLSDLHmmPEQRRKQDWVASLAALDPDLVVVTGD-NMAHPGAVPGVLRALaplldfPGAFVFGSNDytgpvlknpfsyflpdreysegaelpy 144
                    89*******9956666777788888999*********.677776555555554555588*************************999999999999 PP

  Metallophos_2  63 .........................eevveedvlreaaelgtdlp.eeaelel.agekvlliHgdplgvkdalaellkeaeegsdvvvcGHtHvpe 131
                                             ++ +e    + ++  ++d+p  +  +++ a+ +++l H+ +++v d++a++ +e      ++++GHtH  +
     KIR62666.1 145 delrdvftgagwadlnnarttlkagGRLIELVGVDDPHIARDDYPsVAGPVSAaAELSIALSHSPEPAVLDEMAADGFE------LLLAGHTHGGQ 234
                    9998888888888887777776553333555566667777777776677777436777999999876777777777777......********877 PP

  Metallophos_2 132 vekeg.gvlvvn 142
                    v   g g lv n
     KIR62666.1 235 VCVPGfGALVTN 246
                    666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2235.55
//
Query:       KIR62667.1  [L=151]
Description: glutamyl-tRNA amidotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-43  148.5   3.8    1.5e-43  148.3   3.8    1.0  1  YqeY           Yqey-like protein
  ------ inclusion threshold ------
       0.02   14.9   2.2        1.9    8.6   0.3    2.8  2  FANCI_S1-cap   FANCI solenoid 1 cap
        4.8    7.4   8.5       0.64   10.2   1.7    2.3  2  PsaN           Photosystem I reaction centre subunit N (PSAN 


Domain annotation for each model (and alignments):
>> YqeY  Yqey-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.3   3.8   2.5e-47   1.5e-43       1     143 []       5     149 ..       5     149 .. 0.98

  Alignments for each domain:
  == domain 1  score: 148.3 bits;  conditional E-value: 2.5e-47
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTTS..S--HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHGGGS-----HHHHH CS
        YqeY   1 keklkedlkeamkakdkerlstlrllkaaikqeevderk..elsdeevlkvlakevkqRresieefekagRedlaekekaEievleeYlPeqlseeeie 97 
                 k++l++d+++a+ka+d+ ++stlr+ +aa+ ++ev+ ++  el+d+evl+vl+ke+k+Rre++++f++agR + a+ke+aE evl++YlP+qls++e++
  KIR62667.1   5 KDRLTADMRAALKARDELTTSTLRMALAAVGTAEVAGKAkrELTDDEVLAVLTKEAKKRREAATAFADAGRAEQAAKESAEGEVLDRYLPKQLSDDELA 103
                 689********************************9988779********************************************************* PP

                 HHHHHHHHHTT--BGGGHHHHHHHHHHHHTTTS-HHHHHHHHHHH- CS
        YqeY  98 alvkeaiaevgaesmkdmGkvmkalkpkvkGkaDgkkvsalvkekL 143
                 +lv+ a+a+ g +++++mG  mka+++ v+G+a+g++v + v+++L
  KIR62667.1 104 ELVAGALAAGGFTGKAQMGPAMKAAQAAVAGRAEGGRVATEVRRQL 149
                 ******************************************9987 PP

>> FANCI_S1-cap  FANCI solenoid 1 cap
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.3   0.00032       1.9       9      44 ..      32      67 ..      29      70 .. 0.78
   2 ?    5.0   0.0    0.0043        26      15      33 ..      87     106 ..      79     111 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00032
  FANCI_S1-cap  9 aaedsteeLqkfLqtLkedeLtelitnsAlKGkevG 44
                  aa +++e   k  ++L++de  +++t++A K +e++
    KIR62667.1 32 AAVGTAEVAGKAKRELTDDEVLAVLTKEAKKRREAA 67
                  555555555566689**************9999987 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0043
  FANCI_S1-cap  15 eeLqkfL.qtLkedeLteli 33 
                   e L ++L ++L++deL+el+
    KIR62667.1  87 EVLDRYLpKQLSDDELAELV 106
                   55888995679*******98 PP

>> PsaN  Photosystem I reaction centre subunit N (PSAN or PSI-N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   4.1    0.0072        43      19      79 ..      17      76 ..       3      77 .. 0.76
   2 ?   10.2   1.7   0.00011      0.64      15      65 ..      51     104 ..      39     117 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0072
        PsaN 19 kaaegrraallgLaavlavtaaaaasakagvideyLekskankeLndkkrlatsganfara 79
                ka ++  +  l +a + + ta +a+ ak +++d+ +  + + ke   ++ +at+ a+  ra
  KIR62667.1 17 KARDELTTSTLRMALAAVGTAEVAGKAKRELTDDEVL-AVLTKEAKKRREAATAFADAGRA 76
                44455556677788888889999999******98664.46889999999999999988886 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00011
        PsaN  15 a...kvekaaegrraallgLaavlavtaaaaasakagvideyLekskankeLnd 65 
                 +   + +k a++rr a+ ++a +  +  aa+ sa+ +v+d yL k   + eL +
  KIR62667.1  51 EvlaVLTKEAKKRREAATAFADAGRAEQAAKESAEGEVLDRYLPKQLSDDELAE 104
                 344456788999999******99999999999*************999888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1095.35
//
Query:       KIR62668.1  [L=817]
Description: glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-58  196.7   0.0    4.9e-58  195.5   0.0    1.6  1  Transgly        Transglycosylase
    2.2e-23   82.9   0.7    7.9e-23   81.1   0.7    1.9  1  Transpeptidase  Penicillin binding protein transpeptidase dom
     0.0035   17.2   0.2      0.012   15.4   0.1    2.1  2  PASTA           PASTA domain
  ------ inclusion threshold ------
      0.039   13.9   0.1      0.082   12.9   0.1    1.4  1  DUF2680         Protein of unknown function (DUF2680)


Domain annotation for each model (and alignments):
>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.5   0.0   1.1e-61   4.9e-58       3     177 ..      73     259 ..      71     260 .. 0.93

  Alignments for each domain:
  == domain 1  score: 195.5 bits;  conditional E-value: 1.1e-61
    Transgly   3 ellaeleeeenrelvkleeippalkkavvaiEDrrFyehkGvdlkgiarAvlknlksgkssqGgSTitqQlvknlfl...........seertlerKlk 90 
                 ++la++ ++enr+ vk+ +++p++ ka++a+ED++Fy+h+Gvdl+g+arA+++n ++ +s+qG+ST+t+Q+v++++             +e+t +rKl+
  KIR62668.1  73 TPLATM-YDENRRDVKFGDMSPYMPKAIIAAEDHDFYKHNGVDLNGVARAFVNNQSGANSQQGASTLTMQYVRLAIAysathpadvvaATEDTSARKLR 170
                 578888.79*****************************************************************87777766665554466999***** PP

    Transgly  91 eavlAlklekklsKdeILeaYlNsvylgrevyGieaAarayFgkdakdLtlaeaalLagllkaPsrynplen..peeakkrrkvvlerm 177
                 e+ lAl+++k++sKdeIL+ YlN + +g+++yGi+aA+++yFgk++++L+++eaa+Lag++kaPs+ +p+++  +  a +rr++v+++m
  KIR62668.1 171 EMRLALQVDKEFSKDEILTRYLNLASFGNGAYGIYAASQVYFGKPPSKLKIEEAAMLAGMVKAPSTNDPTTKtgYPLALDRRNYVIDNM 259
                 *********************************************************************88656889999*******99 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.7   1.8e-26   7.9e-23       3     289 ..     362     672 ..     361     687 .. 0.72

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 1.8e-26
                     EEEEETTT-BEEEEEEESE-TTTHHCC......................TCGCCSTHH.HH--BB-GGGGHHHHHHHHHHTTS.....STTSEEE CS
  Transpeptidase   3 avvldaktgevlamaskpsydpnakvg......................kneplanra.vqsqyePGStfKvvtaaaaleagv.....ikpdetl 69 
                     + v+++ tg+v a++ +++++ +  ++                        +pl+++    + y+ GStfK++t++aale+g+     i+  +++
      KIR62668.1 362 VAVVEPGTGRVRALSVNRNFKIDDPKKpqnklnsdprkrskgirgnypnTVNPLLSGGgDIKGYQAGSTFKIFTIVAALEKGIplsytINSPKQF 456
                     567788888888888887765555555555888888888888887776644444444303478*******************4222224433333 PP

                     EETCCEETTSS....ECTCCCC-...SSSSEE.EHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--B--SSHHHHHHHH CS
  Transpeptidase  70 ddsggkiqggqs...ikdweqdn...kgsegi.tlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaGvptrkwlegatis 157
                      +s++ i ++++    + +   +   +   g+ ++ +a+  S+ntyfv l+q++ga+ + k+++k+g+  +   d    ++    ++w  ga   
      KIR62668.1 457 -KSEYIISPSSPaacQGPYYCPTnsvESMAGVhNMWSAFGRSVNTYFVPLQQQVGAENVVKAAQKLGIQFRSTEDADFANNKEAAHQW--GA--- 545
                     .33444555555576333332223664445556**********************************999555555555555457888..66... PP

                     HTTT.SBB-HHHHHHHHHHHHTTTEEE--BSEEEEEECTTEEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCG......TCTTS...-- CS
  Transpeptidase 158 fgiG.ltvtplqlaqayaaiangGklvkPhlvkaivdpdgvrkvkpkelnklpisketaekvkeglkgvvsrgsgtata......avegy...kv 242
                     f+ G  + tpl la+aya++a +Gk+ +P  v++i++pdg++     +  ++ is + a+   ++ +  v + s+t +       +v g+   +v
      KIR62668.1 546 FTLGvSATTPLDLANAYATLAADGKYCEPIPVQEIKGPDGKKLDVANPRCEQRISTQVARAAVDAARCPVGDRSSTSKCtgatapNVRGIvgkPV 640
                     89998999********************************7777788888999******9999999988888844333333556744444666** PP

                     EEEEEEEEECSSSTTSEEEEEEEEEEEEEESTTS-SEEEEEEECTCS CS
  Transpeptidase 243 agKTGTAevagkkgngkkegakiswfvgyapadnpkyavavlieqpk 289
                     agK+GT+   +  +         s++v+++++    y+va ++ +p+
      KIR62668.1 641 AGKSGTTDSEK--T---------SSLVAMTKQ----YSVAGIMADPD 672
                     ******98875..2.........266777764....66666666665 PP

>> PASTA  PASTA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         2     9e+03      13      26 ..     513     526 ..     512     533 .. 0.77
   2 !   15.4   0.1   2.8e-06     0.012       3      62 ..     723     781 ..     722     782 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2
                 HHHHHHHHTT--CC CS
       PASTA  13 eAkatLkalGlkik 26 
                  +++++++lG++++
  KIR62668.1 513 NVVKAAQKLGIQFR 526
                 689999****9654 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.8e-06
                 --TTTTSBHHHHHHHHHHTT-.-CCCEEEECTCCGTTBEEEECS-TTSEECTTS-EEEEEE CS
       PASTA   3 vPdvtGmsvdeAkatLkalGl.kiktveetsddvpeGtVisQsPeaGtevskgskvtltvs 62 
                 +Pdv+  +v++Ak+ L+ +G+ ++  + +++++ ++G+ +++sP+ G ++ kg  v++ vs
  KIR62668.1 723 IPDVKCVDVETAKDRLRGAGFdPVVSSAKVPSSCAAGQAAGTSPN-GRTI-KGGVVVIEVS 781
                 799999***************77777777****************.8888.9999999998 PP

>> DUF2680  Protein of unknown function (DUF2680)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.8e-05     0.082      18      43 ..     250     275 ..     247     277 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.8e-05
     DUF2680  18 elrKqivdKyVeaGllTkeqgekikk 43 
                 + r+ ++d  V+ G +Tke ge+ k+
  KIR62668.1 250 DRRNYVIDNMVKTGAITKEEGEAAKA 275
                 668899****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (817 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.53
# Mc/sec: 4662.30
//
Query:       KIR62669.1  [L=105]
Description: regulatory protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-24   83.7   0.9    1.4e-23   83.2   0.9    1.2  1  Whib      Transcription factor WhiB
  ------ inclusion threshold ------
      0.021   14.6   1.2       0.29   10.9   0.0    2.9  3  DUF1289   Protein of unknown function (DUF1289)
      0.038   13.2   0.2      0.044   13.0   0.2    1.0  1  DUF2800   Protein of unknown function (DUF2800)


Domain annotation for each model (and alignments):
>> Whib  Transcription factor WhiB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.9   2.4e-27   1.4e-23       1      64 []       7      69 ..       7      69 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 2.4e-27
        Whib  1 WreraaCrgedpelffpekgdreeeAkavCarCpVrreCleealeegeeyGvwGGltereRraL 64
                W + aaC++ dp++ f ++ ++++ Ak++C++CpVr eCl++al+++ e+GvwGG+tereRraL
  KIR62669.1  7 WPSLAACQNGDPDALFVQG-AEQNVAKRICRSCPVRYECLADALDNRIEFGVWGGMTERERRAL 69
                8899************886.9*****************************************97 PP

>> DUF1289  Protein of unknown function (DUF1289)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.084     5e+02      12      19 ..      31      38 ..      27      42 .. 0.82
   2 ?   10.9   0.0   4.9e-05      0.29      25      46 ..      54      75 ..      51      77 .. 0.88
   3 ?    2.1   0.1     0.029   1.7e+02      21      36 ..      71      86 ..      70      94 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.084
     DUF1289 12 edglClGC 19
                ++++C+ C
  KIR62669.1 31 AKRICRSC 38
                68899999 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 4.9e-05
     DUF1289 25 EiaaWssmsdeerravlarleq 46
                E   W  m+++erra+l+r +q
  KIR62669.1 54 EFGVWGGMTERERRALLRRHPQ 75
                7889*************99876 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.029
     DUF1289 21 RtldEiaaWssmsdee 36
                R   ++a W++m +++
  KIR62669.1 71 RRHPQVASWRKMFEAA 86
                788899*****98776 PP

>> DUF2800  Protein of unknown function (DUF2800)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   7.3e-06     0.044     206     280 ..      23      93 ..       9     100 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.3e-06
     DUF2800 206 aegegefvpgehcrFCkakatCraraekalklakddfkeptlltdeeiaevlskvdelkswakdveeyaleaaln 280
                 ++g+++ v+ + cr C ++ +C a a ++    + +f     +t+ e  ++l++ ++++sw k  e+++ ++a++
  KIR62669.1  23 VQGAEQNVAKRICRSCPVRYECLADALDN----RIEFGVWGGMTERERRALLRRHPQVASWRKMFEAAMKKNAKD 93 
                 578889999999**********9777665....358999999***********************9999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 808.36
//
Query:       KIR62670.1  [L=382]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-23   82.7   0.0    1.6e-22   80.1   0.0    2.1  2  ArsA_ATPase      Anion-transporting ATPase
    1.5e-09   38.0   0.0    2.5e-09   37.3   0.0    1.2  1  AAA_31           AAA domain
    7.2e-09   35.8   0.0    2.1e-08   34.3   0.0    1.9  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
    5.8e-06   25.9   0.7    0.00075   19.0   0.7    2.4  1  ParA             NUBPL iron-transfer P-loop NTPase
    9.5e-05   22.1   0.0    0.00043   20.0   0.1    2.0  2  SRP54            SRP54-type protein, GTPase domain
    0.00057   20.2   0.2     0.0015   18.8   0.2    1.9  1  AAA_22           AAA domain
    0.00097   19.0   0.0       0.12   12.2   0.0    2.3  2  AAA_26           AAA domain
     0.0013   18.2   0.1     0.0027   17.2   0.0    1.5  2  PhoH             PhoH-like protein
      0.002   18.4   0.5     0.0064   16.7   0.0    2.1  2  AAA_28           AAA domain
     0.0026   17.5   0.2     0.0026   17.5   0.2    1.7  2  AAA_30           AAA domain
     0.0042   17.3   0.6      0.011   15.9   0.1    2.0  2  AAA_33           AAA domain
      0.008   15.8   3.2      0.008   15.8   3.2    2.4  2  AAA_25           AAA domain
  ------ inclusion threshold ------
      0.015   15.7   0.3      0.015   15.7   0.3    2.2  2  AAA_16           AAA ATPase domain
      0.018   14.1   0.1      0.038   13.0   0.1    1.5  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.022   14.5   0.1       0.05   13.3   0.1    1.5  1  IstB_IS21        IstB-like ATP binding protein
      0.023   15.7   2.7       0.65   11.1   0.1    3.2  2  Methyltransf_24  Methyltransferase domain
      0.027   13.8   0.0       0.04   13.2   0.0    1.2  1  ATPase           KaiC
      0.074   12.5   0.0       0.44    9.9   0.0    1.9  2  Fer4_NifH        4Fe-4S iron sulfur cluster binding proteins,
      0.082   12.9   0.0       0.13   12.2   0.0    1.4  1  ResIII           Type III restriction enzyme, res subunit
       0.13   12.4   0.0        0.3   11.2   0.0    1.6  1  DUF1290          Protein of unknown function (DUF1290)
       0.14   11.6   0.2        2.7    7.4   0.0    2.1  2  Orbi_VP6         Orbivirus helicase VP6
       0.16   11.2   0.4        5.2    6.3   0.2    2.3  2  MipZ             ATPase MipZ
       0.28   11.4   1.6       0.93    9.7   1.6    1.9  1  CobA_CobO_BtuR   ATP:corrinoid adenosyltransferase BtuR/CobO/
       0.47   10.3   2.9        1.9    8.4   0.1    2.2  2  YjeF_N           YjeF-related protein N-terminus


Domain annotation for each model (and alignments):
>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   2.2e-25   1.6e-22       2     248 ..      22     297 ..      21     316 .. 0.74
   2 ?   -2.0   0.0       2.1   1.5e+03     260     301 ..     336     377 ..     330     380 .. 0.82

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 2.2e-25
                  EEEEEEESTTSSHHHHHHHHHHHHHHT.TS-EEEEE-STTTHHHHHHTS.--BSS-EEET........SSEEEEE--HHHHHHHHHCCHHGGGSCCHH CS
  ArsA_ATPase   2 kvilvgGKGGVGKttvsaatavklsek.gkkvllistDPAhslsDsfdq.klgkeptkvk........eNLsavEidpeveleeakqevqkeeeallg 89 
                  ++++  G GGVGKtt +aa+a++ +e+ g+++++++ DPA  l+ s+   +l ++p++vk          L+a+ +d++   +    + ++ ++a+  
   KIR62670.1  22 RIVVCCGAGGVGKTTTAAALALRAAEQhGRRTVVLTIDPARRLAQSLGLtELDNTPRQVKgidveasgGELHAMMLDMKRTFDDVVLQHTDPTKAQEI 119
                  89999******************88653899****************96589999***9998766655567777777776666666555555543332 PP

                  HHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHHCSSSSEEEEESBSCCHTCGGGGHHHHHHHHHH.HHHHHHH........HHHHHHHHHCCCSHC.HH CS
  ArsA_ATPase  90 leeledvlaeelaslPGideilsfeellkyvkeeeydvvvlDtaPTGhtlrllslpevleklle.klvklke........klsplakqlvkllgl.gg 177
                      + + +  ++++ G++e +++e+l ++    e+d +v+Dt+P   +l +l+ p  l+++l+ ++++l           + +l+ +++++++  ++
   KIR62670.1 120 --FANPFYQAMSSTFAGTQEYMAMEKLGQLHARGEWDLIVVDTPPSRSALDFLDAPARLSRFLDgRMLRLLLaparsggrSMFSLVTASFGMFSKvVQ 215
                  ..45667777778889********************************************99863555554345557777555555555555433023 PP

                  HHHH........HHHHHHHHHHHHHHHHHHH...HTSTTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEEE-TT CS
  ArsA_ATPase 178 vsie........ealeeleetkeeikkveei...ltdpertsfrlVvipEklslkEteRaikeLkkygikvdavivNkllpe 248
                  + +           +++l++++  +++  e+   + +   t+f lV  pE  +++E    +  L++  +    ++ N++ + 
   KIR62670.1 216 KVLGaqlltdlsGFVAALDSMFGGFRQRAEQtyrILQARETAFLLVAAPEPDAVREAAYFAGRLHSERMPLAGLVLNRVHEP 297
                  33325333344455666666665555544442225577889************************************98544 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.1
                  HHHHHHHHHHHHHHHTTTSEEEEEE--SS-S-SHHHHHHHHH CS
  ArsA_ATPase 260 rkkiqkkylkeieelfedlevvklplleeEvvGlekleklse 301
                  + + ++++  +  e f +++ v++  ++++v  ++ l+++ +
   KIR62670.1 336 QAQREQRVAARFTEAFPQVPAVSVTAQPADVHDVDGLRTIGA 377
                  55678889999999********99999999999988888776 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   3.3e-12   2.5e-09       6     131 ..      25     166 ..      21     169 .. 0.72

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 3.3e-12
      AAA_31   6 ianqKGGvGKTTtsvnlaaala.klgkkvLlvDlDpQanattglgiekne....iek..........tlyevli.eeknikeaiiktk.venldlipss 87 
                 +    GGvGKTTt+ +la   a + g ++ +  +Dp   ++++lg+++ +                 +l+ +++  + + ++++ +++  ++ + i ++
  KIR62670.1  25 VCCGAGGVGKTTTAAALALRAAeQHGRRTVVLTIDPARRLAQSLGLTELDntprQ-VkgidveasggELHAMMLdMKRTFDDVVLQHTdPTKAQEIFAN 122
                 45556**************999789*****************9998544434430.1333334444467777765677777777765535555888888 PP

      AAA_31  88 idLaeaeielvelekkeeilkellekvkdeYDyiiiDcpPsLgl 131
                    ++++  ++++++   + k    + + e+D+i++D+pPs + 
  KIR62670.1 123 PFYQAMSSTFAGTQEYMAMEKLGQLHARGEWDLIVVDTPPSRSA 166
                 888888888887777666533334455678**********9775 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   2.8e-11   2.1e-08       1     104 [.      23     314 ..      23     343 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 2.8e-11
                 EEEEESSTTSSHHHHHHHHHHHHHH.TT--EEEEEEEESSCCCCHHTTEB-HHHH............................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................ RF
        CbiA   1 iaiastkGGvGKTtlaanLaralar.rglrVllvDaDpqannlaileglendiep............................................ 54 
                 i+++ + GGvGKTt+aa+La   a+ +g+r++++  Dp + ++ +l  +e d  p                                            
  KIR62670.1  23 IVVCCGAGGVGKTTTAAALALRAAEqHGRRTVVLTIDPARRLAQSLGLTELDNTPrqvkgidveasggelhammldmkrtfddvvlqhtdptkaqeifa 121
                 78999***************8777758****************965555555555889*****************999999999999999999999999 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        CbiA  55 ................................................................................................... 54 
                                                                                                                    
  KIR62670.1 122 npfyqamsstfagtqeymameklgqlhargewdlivvdtppsrsaldfldaparlsrfldgrmlrlllaparsggrsmfslvtasfgmfskvvqkvlga 220
                 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                 ..............................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHHHHHHHHHC CS
                 ..............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ..............................................dlkrllellealgkkkalllkiagvvlnrvdgeneetllkealeelkqry 104
                                                               d+ r    ++   ++ +  + +ag+vlnrv ++   +l  ea+    qr+
  KIR62670.1 221 qlltdlsgfvaaldsmfggfrqraeqtyrilqaretafllvaapepDAVREAAYFAGRLHSER--MPLAGLVLNRVHEPTVPALDAEACLAAAQRL 314
                 999999999999999999999999999999988888888888888866665555544444433..8899999999998877777666666665555 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.7     1e-06   0.00075       6      41 ..      23      59 ..      20     169 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1e-06
        ParA  6 iavlSgKGGVGKStvavnlAlaLa.kkglkvgllDaD 41
                i+v+ g GGVGK+t+a+ lAl  a ++g ++ +l +D
  KIR62670.1 23 IVVCCGAGGVGKTTTAAALALRAAeQHGRRTVVLTID 59
                89******************98875889999999998 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   5.7e-07   0.00043       3      44 ..      23      65 ..      21      79 .. 0.90
   2 ?   -1.8   0.0       2.8   2.1e+03     106     140 ..     245     279 ..     222     298 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5.7e-07
                EEEEEESTTSSHHHHHHHHHHHHHHT.TS-EEEEEESTSSTTH CS
       SRP54  3 villvGlqGaGKTttlaKLaallkke.gkkvllvaaDtfRaaA 44
                +++ +G  G+GKTtt+a La +  ++ g+++++ + D  R  A
  KIR62670.1 23 IVVCCGAGGVGKTTTAAALALRAAEQhGRRTVVLTIDPARRLA 65
                68899****************999998999******9988655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.8
                 HHHHHHHSSSEEEEEEETTBHTHHHHHHHHHHHHS CS
       SRP54 106 kkikkvvkpdevllvldattgqeavkqakaFkeav 140
                 +++ +++++ e+ + l a+ + +av++a  F+ ++
  KIR62670.1 245 EQTYRILQARETAFLLVAAPEPDAVREAAYFAGRL 279
                 55666777888888888888888888887775433 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2     2e-06    0.0015       6      45 ..      22      58 ..      20     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2e-06
      AAA_22  6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevv..fv 45
                +i+v++G  G+GKTt+++ l+ ++ e     ++++++v  ++
  KIR62670.1 22 RIVVCCGAGGVGKTTTAAALALRAAE-----QHGRRTVvlTI 58
                689********************944.....34444442233 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.036        27     100     133 ..      22      55 ..       4      71 .. 0.69
   2 !   12.2   0.0   0.00016      0.12     118     171 ..     245     303 ..     229     345 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.036
      AAA_26 100 divvVEGagglgvpiteellnadiaknlgapvil 133
                 +ivv+ Gagg+g+ +t+ +l  + a++ g  +++
  KIR62670.1  22 RIVVCCGAGGVGKTTTAAALALRAAEQHGRRTVV 55 
                 5666666666666666666666666666655554 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00016
      AAA_26 118 llnadiaknlgapvilVargglgtinqllltiealrqknvrvlGvilNkvrnp.....e 171
                 + +++i ++     +lVa+++ +++  +++ +  l+++  +++G++lN+v +p     +
  KIR62670.1 245 EQTYRILQARETAFLLVAAPEPDAVREAAYFAGRLHSERMPLAGLVLNRVHEPtvpalD 303
                 55788888888899************************************999444331 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.7e-06    0.0027      18      71 ..      20      74 ..       5      81 .. 0.82
   2 ?   -3.7   0.0       8.7   6.5e+03      73      92 ..     114     133 ..     106     144 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.7e-06
                H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE.E-S--TT----SS--- CS
        PhoH 18 kndivfaiGpaGtGKtylavalavealkkkkvkriilt.rpaveageelGflpgd 71
                   iv++ G  G GKt  a ala++a +++  + ++lt  pa    ++lG ++ d
  KIR62670.1 20 GVRIVVCCGAGGVGKTTTAAALALRAAEQHGRRTVVLTiDPARRLAQSLGLTELD 74
                4579*************************98888888625777889999998877 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8.7
                 -----TTTHHHHHHHTTTS- CS
        PhoH  73 eekvdpylrplydaLkdllg 92 
                 ++  +++ +p+y+a+++++ 
  KIR62670.1 114 TKAQEIFANPFYQAMSSTFA 133
                 55667888999999988764 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   8.6e-06    0.0064       2      47 ..      24      77 ..      23     111 .. 0.79
   2 ?   -1.8   0.1       4.3   3.2e+03      23      43 ..     322     342 ..     295     358 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 8.6e-06
      AAA_28  2 ivitGgestGKTtlleaLa.....argypvv...pEaareileeklakgedalp 47
                +v  G+ + GKTt+++aLa     ++g ++v    ++ar++ ++++ ++ d+ p
  KIR62670.1 24 VVCCGAGGVGKTTTAAALAlraaeQHGRRTVvltIDPARRLAQSLGLTELDNTP 77
                7889***************88775557665446899999999988866555444 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.3
      AAA_28  23 gypvvpEaareileeklakge 43 
                 g++ v +a+  ++++ +++++
  KIR62670.1 322 GTVDVLRAHAALVQQAQREQR 342
                 333333333333333333332 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   3.5e-06    0.0026      10      68 ..      13      70 ..       4     118 .. 0.75
   2 ?   -3.0   0.1       6.6   4.9e+03      58      72 ..     310     323 ..     307     355 .. 0.46

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.5e-06
      AAA_30 10 vealltsgdrvavltGpAGtGKttalkal.reaweaaggrviglAptgkaAkvLaeelgi 68
                 + l+  g r++v  G+ G GKtt+ +al  +a+e++g+r ++l+     A++La++lg+
  KIR62670.1 13 DQILADPGVRIVVCCGAGGVGKTTTAAALaLRAAEQHGRRTVVLTI--DPARRLAQSLGL 70
                444555566789999*************967888888999888863..345555555554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.6
      AAA_30  58 aAkvLaeelgieast 72 
                 aA++Lae+ g    t
  KIR62670.1 310 AAQRLAEAGGH-DGT 323
                 44445443332.111 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.4e-05     0.011       1      39 [.      23      67 ..      23     183 .. 0.65
   2 ?   -2.6   0.0       7.4   5.5e+03     106     118 ..     334     346 ..     308     359 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-05
      AAA_33  1 lvllvGlpGsGKstlaerl....lkklg..avllssdtlrrrlfg 39
                +v+++G+ G+GK+t a  l    ++++g  +v+l+ d +rr    
  KIR62670.1 23 IVVCCGAGGVGKTTTAAALalraAEQHGrrTVVLTIDPARRLAQS 67
                599***************977766677799999999996663333 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.4
      AAA_33 106 tdeetlkeRlakR 118
                 + +++ ++R+a+R
  KIR62670.1 334 VQQAQREQRVAAR 346
                 3344445555554 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   3.2   1.1e-05     0.008      36     150 ..      24     160 ..      16     181 .. 0.74
   2 ?   -2.4   0.1       4.1     3e+03      74      88 ..     331     345 ..     299     372 .. 0.50

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.1e-05
      AAA_25  36 allaGapgtGKttlaldlalava..tGkpwlg................pvapeqgkVlyvsaEdsedelrrRlravgealrddarllvld..lagv.es 113
                 ++ +Ga+g+GKtt a  lal  a   G+                    ++ ++++ V  ++ E s  el+  +  + ++++ d  l+ +d   a++   
  KIR62670.1  24 VVCCGAGGVGKTTTAAALALRAAeqHGRRTVVltidparrlaqslgltELDNTPRQVKGIDVEASGGELHAMMLDMKRTFD-DVVLQHTDptKAQEiFA 121
                 6789*******************886666555788899999999999999999************9999999999999983.33333333222444556 PP

      AAA_25 114 lpLfakdrggtlltadvdalea..aieevegvrlvviDp 150
                 +p +++++   + t+++ a+e+  ++ ++ +++l+v+D+
  KIR62670.1 122 NPFYQAMSSTFAGTQEYMAMEKlgQLHARGEWDLIVVDT 160
                 666666555544566665555511334446699999998 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.1
      AAA_25  74 VlyvsaEdsedelrr 88 
                   +v+  ++e++++ 
  KIR62670.1 331 AALVQQAQREQRVAA 345
                 222222222223333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.3     2e-05     0.015      22      57 ..      19      57 ..      11     197 .. 0.81
   2 ?   -0.8   0.6       2.3   1.7e+03     106     106 ..     319     319 ..     211     364 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2e-05
      AAA_16 22 grpelvllsGesGvGKsslvrellralekd...ggiflr 57
                ++ ++v++ G+ GvGK++ + +l+ ++ ++   + ++l+
  KIR62670.1 19 PGVRIVVCCGAGGVGKTTTAAALALRAAEQhgrRTVVLT 57
                4459****************8887555555232233333 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.3
      AAA_16 106 a 106
                 +
  KIR62670.1 319 G 319
                 1 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   5.1e-05     0.038      20      69 ..      13      62 ..       3      68 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.1e-05
                HHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHH.CTT--EEEEEE---- CS
        MeaB 20 erllakaGraqvvGltGvPGaGkstlvealglelr.rrGkrvavlavDPss 69
                +++la+ G   vv   G  G+Gk t+  al+l+ + ++G+r  vl +DP+ 
  KIR62670.1 13 DQILADPGVRIVV-CCGAGGVGKTTTAAALALRAAeQHGRRTVVLTIDPAR 62
                5666777755444.689*************99876167***********85 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   6.7e-05      0.05      50      83 ..      24      58 ..      19      82 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.7e-05
   IstB_IS21 50 ivllGpsGvGKshlaialgveavr.aglsvlfvrv 83
                +v +G  GvGK+  a+al+ +a++ +g +++ +++
  KIR62670.1 24 VVCCGAGGVGKTTTAAALALRAAEqHGRRTVVLTI 58
                7889****************999867777766665 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00087      0.65       8      82 ..      33     165 ..      29     179 .. 0.60
   2 ?    2.3   0.3      0.47   3.5e+02      24      78 ..     319     372 ..     256     380 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00087
  Methyltransf_24   8 Gvstlwllralrrnga....grlvavdhdpg.................................................aeeaaalareagld 48 
                      G++t + + alr++++    + ++++d+ ++                                                  ++a++++++  ++
       KIR62670.1  33 GKTTTAAALALRAAEQhgrrTVVLTIDPARRlaqslglteldntprqvkgidveasggelhammldmkrtfddvvlqhtdPTKAQEIFANPFYQ 126
                      7777777777777777777888888888886666666666666655666666655555555555555444444444333333344444443333 PP

  Methyltransf_24  49 drvrlikads........eealasla.agsiDllfiDgghaae 82 
                      +        +         e l++l  +g+ Dl+++D +++ +
       KIR62670.1 127 AMSST----FagtqeymaMEKLGQLHaRGEWDLIVVDTPPSRS 165
                      33333....244446666777777778999*******997654 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.47
  Methyltransf_24  24 grlvavdhdpgaeeaaalareaglddrvrlikadseealasla..agsiDllfiDgg 78 
                      g+  +vd  +   ++aal+++a+ ++rv  +  +++ +++ ++  a++ D+  +Dg 
       KIR62670.1 319 GHDGTVDVLR---AHAALVQQAQREQRVAARFTEAFPQVPAVSvtAQPADVHDVDGL 372
                      2333444444...55566666666666655555555555544477888888888886 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.4e-05      0.04      19      60 ..      21      62 ..      11     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.4e-05
      ATPase 19 grvvlitGepGtGKtifalqFlikgaekygepgvfvtveepa 60
                 r+v  +G  G GKt+ a+  +++ ae+ g+++v  t++   
  KIR62670.1 21 VRIVVCCGAGGVGKTTTAAALALRAAEQHGRRTVVLTIDPAR 62
                689999********************************9665 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0006      0.44       2      39 ..      23      61 ..      22      75 .. 0.83
   2 ?    0.1   0.0      0.59   4.4e+02     170     254 ..     280     364 ..     234     375 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0006
   Fer4_NifH  2 kiaiyGkGGiGksttsqnlsaalaem.gkkvlivGCDPk 39
                 +   G GG+Gk+tt++ l+   ae+ g++ +++  DP 
  KIR62670.1 23 IVVCCGAGGVGKTTTAAALALRAAEQhGRRTVVLTIDPA 61
                56778*************998777651699999999996 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.59
   Fer4_NifH 170 ksggvrlgGliinsrkvddereliekfa.eelgtkvlevvPrdeivrkaelrkktvieyapeseqakeyrelarkilenkklviPk 254
                 +s+ + l+Gl+ n r  +     +++ a  + + ++ e+   d +v   +++   v + + e+++a  + e   ++   + +  P 
  KIR62670.1 280 HSERMPLAGLVLN-RVHEPTVPALDAEAcLAAAQRLAEAGGHDGTVDVLRAHAALVQQAQREQRVAARFTEAFPQVPAVSVTAQPA 364
                 4556889999999.633333344444330344455666667777888888888888888888888888887776666666555555 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00018      0.13      32      62 ..      29      59 ..      18     159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00018
                STTSTHHHHHHHHHHHH-S.....-EEEEES CS
      ResIII 32 aTGtGKTlvaaklierllkkgkeekflflvp 62
                a G+GKT +aa+l+ r +++++++ +++ ++
  KIR62670.1 29 AGGVGKTTTAAALALRAAEQHGRRTVVLTID 59
                779****************999876666544 PP

>> DUF1290  Protein of unknown function (DUF1290)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00041       0.3      13      33 ..     229     249 ..     226     259 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00041
     DUF1290  13 ilaaldsvfGgiraslekkFd 33 
                  +aalds+fGg+r   e++++
  KIR62670.1 229 FVAALDSMFGGFRQRAEQTYR 249
                 58****************997 PP

>> Orbi_VP6  Orbivirus helicase VP6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2      0.18   1.4e+02     101     147 ..      27      74 ..      18      91 .. 0.77
   2 ?    7.4   0.0    0.0036       2.7     243     282 ..     233     276 ..     226     282 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.18
    Orbi_VP6 101 rgdgkvgggggdadagvgaiganggrwvvlteeiaraieskyg.tkid 147
                  g g vg     a   + a    g r vvlt + ar +    g t +d
  KIR62670.1  27 CGAGGVGKTTTAAALALRAAEQHGRRTVVLTIDPARRLAQSLGlTELD 74 
                 5788899999999999999999***********999987777634444 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0036
    Orbi_VP6 243 llsmiggv....erkmapigaresavmlvsnsikdvvratayft 282
                 l sm gg     e+    + are+a +lv+    d vr +ayf+
  KIR62670.1 233 LDSMFGGFrqraEQTYRILQARETAFLLVAAPEPDAVREAAYFA 276
                 56888886211134455689***********************7 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2     0.007       5.2       2      39 ..      22      60 ..      21      68 .. 0.80
   2 ?    1.9   0.0      0.15   1.1e+02      95     114 ..     148     167 ..     126     172 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.007
                EEEE--SSTTSSHHHHHHHHHH.HHHTTT--EEEEE--T CS
        MipZ  2 vivlgnekGGsGksttavhvav.aLlkkGarvaaidldl 39
                +iv+    GG Gk+tta  +a  a  ++G r  ++ +d 
  KIR62670.1 22 RIVVCCGAGGVGKTTTAAALALrAAEQHGRRTVVLTIDP 60
                5999999**********9998735567798888888775 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.15
                 HHHHH-SEEEEE--SS--HH CS
        MipZ  95 dleaeldfividtPGsdsal 114
                 ++  e d+iv+dtP s sal
  KIR62670.1 148 HARGEWDLIVVDTPPSRSAL 167
                 344589********988765 PP

>> CobA_CobO_BtuR  ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.6    0.0012      0.93       5      35 ..      23      55 ..      21     180 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0012
  CobA_CobO_BtuR  5 ihvytGdG.KGKttAAlGlalRalg.aglkvlv 35
                    i v +G G  GKtt A  lalRa+  +g + +v
      KIR62670.1 23 IVVCCGAGgVGKTTTAAALALRAAEqHGRRTVV 55
                    7889998537*************9624544444 PP

>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0025       1.9      23      54 ..      17      48 ..       5      77 .. 0.74
   2 ?    1.8   0.4      0.26   1.9e+02      42      85 ..     307     351 ..     304     378 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0025
      YjeF_N 23 spaekkvlvlvGsgnnGgdglaaArhLaqega 54
                ++++ +++v++G g  G    aaA  L+ ++ 
  KIR62670.1 17 ADPGVRIVVCCGAGGVGKTTTAAALALRAAEQ 48
                577889************99999999944332 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.26
      YjeF_N  42 glaaArhLaqegak.Vtvllleeeekldedaeralellkkaggkv 85 
                 +laaA+ La++g +  tv +l+  + l ++a+r+ + + ++ + +
  KIR62670.1 307 CLAAAQRLAEAGGHdGTVDVLRAHAALVQQAQREQRVAARFTEAF 351
                 799*****9988766555447777777777777777766665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 2725.29
//
Query:       KIR62671.1  [L=325]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-21   76.2   0.0    1.2e-15   57.5   0.0    2.1  2  ArsA_ATPase  Anion-transporting ATPase
    5.4e-08   32.9   0.0      9e-08   32.2   0.0    1.6  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    4.2e-07   30.0   0.1    6.1e-06   26.3   0.1    2.1  1  AAA_31       AAA domain
    1.2e-05   24.9   0.3    2.8e-05   23.7   0.0    1.7  2  ParA         NUBPL iron-transfer P-loop NTPase
     0.0014   18.1   0.1     0.0026   17.3   0.1    1.3  1  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
      0.002   17.8   0.3      0.002   17.8   0.3    2.2  3  AAA_25       AAA domain
     0.0036   17.0   0.6     0.0095   15.7   0.6    1.7  1  AAA_30       AAA domain
     0.0071   15.7   0.0      0.025   13.9   0.0    1.9  2  MipZ         ATPase MipZ
  ------ inclusion threshold ------
      0.013   15.2   0.1      0.031   14.0   0.1    1.5  1  IstB_IS21    IstB-like ATP binding protein
      0.021   15.2   4.0      0.048   14.0   4.0    2.0  1  AAA_16       AAA ATPase domain
      0.033   14.0   0.0      0.046   13.5   0.0    1.2  1  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
      0.042   14.4   0.0      0.066   13.7   0.0    1.3  1  AAA_23       AAA domain
      0.043   13.3   0.2      0.075   12.5   0.2    1.3  1  PhoH         PhoH-like protein
      0.056   13.7   0.0       0.12   12.6   0.0    1.6  1  AAA_22       AAA domain
      0.058   12.8   0.1      0.093   12.2   0.1    1.3  1  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
        0.1   12.5   0.2       0.35   10.8   0.1    1.8  2  NACHT        NACHT domain
       0.12   12.0   0.0        0.2   11.3   0.0    1.3  1  Zot          Zonular occludens toxin (Zot)
       0.12   11.5   0.2       0.17   11.1   0.2    1.1  1  DUF2075      Uncharacterized conserved protein (DUF2075)
       0.16   11.3   0.0       0.24   10.8   0.0    1.2  1  SMC_N        RecF/RecN/SMC N terminal domain
       0.18   11.5   0.1       0.27   10.9   0.1    1.4  1  AAA_24       AAA domain
       0.37   10.1   1.4       0.33   10.2   0.2    1.5  2  VirC1        VirC1 protein


Domain annotation for each model (and alignments):
>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   1.4e-18   1.2e-15       5     150 ..      21     176 ..      17     195 .. 0.84
   2 !   17.7   0.0   1.9e-06    0.0016     191     244 ..     184     236 ..     171     244 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 1.4e-18
                  EEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-STTTHHHHHHTS-.-BSS-EEET.....SSEEEEE--HHHHHHHHHCCHHGGGSCCHHHHHHHHH CS
  ArsA_ATPase   5 lvgGKGGVGKttvsaatavklsekgkkvllistDPAhslsDsfdqk.lgkeptkvk.....eNLsavEidpeveleeakqevqkeeeallgleeledv 96 
                  +v+GKGG GKt+v+aa+a+ l+  g+++ll+ +     ++  f ++ l   ++ ++         a  +d+e++l e+ + ++k   a      + ++
   KIR62671.1  21 VVTGKGGTGKTSVAAALALALAADGRRTLLVEVEGRQGIAQLFGTEpLPYAERHLTdapggGEVRALAVDAEEALLEYLDMFYKLGAAGRA-LRKLGA 117
                  79******************************************97344556666656677789999999999999999999988776555.556688 PP

                  HHHHHTSSTTHHHHHHHHHHHHHHH.....CSSSSEEEEESBSCCHTCGGGGHHHHHHH CS
  ArsA_ATPase  97 laeelaslPGideilsfeellkyvk.....eeeydvvvlDtaPTGhtlrllslpevlek 150
                  ++ ++++ PG+ ++l   ++++ ++      + yd+vvlD +PTG   r+l++     +
   KIR62671.1 118 IDFATTIAPGLRDVLLTGKVKEATTrkagqRRAYDAVVLDAPPTGRIGRFLNVTAETAR 176
                  99999999************9988878877899******************98766544 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.9e-06
                  HHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEE CS
  ArsA_ATPase 191 keeikkveeiltdpertsfrlVvipEklslkEteRaikeLkkygikvdavivNk 244
                  k + + v + l  p +t++ +V+  E+++++Et  a++eL+++g+ v  vivN 
   KIR62671.1 184 KTQSEGVAALLRSP-MTAVHVVTLLEEMPVQETVDAVAELTQLGFPVGRVIVNA 236
                  55556666666655.68************************************6 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   1.1e-10     9e-08       3      36 ..      21      54 ..      19     241 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 1.1e-10
                EEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  3 iastkGGvGKTtlaanLaralarrglrVllvDaD 36
                ++ +kGG+GKT++aa+La ala +g+r+llv + 
  KIR62671.1 21 VVTGKGGTGKTSVAAALALALAADGRRTLLVEVE 54
                789***************************9875 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   7.2e-09   6.1e-06       6     128 ..      21     161 ..      18     200 .. 0.61

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 7.2e-09
      AAA_31   6 ianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQanattglgie.kneiektlyev......lieeknikeaiiktkvenl.dlipssidLaea.ei 95 
                 ++  KGG GKT  + +la ala  g ++Llv++   +  ++ +g+e    +e++l+++       +  ++ +ea+ +   ++  +l  +   L ++  i
  KIR62671.1  21 VVTGKGGTGKTSVAAALALALAADGRRTLLVEVEGRQGIAQLFGTEpLPYAERHLTDApgggevRALAVDAEEALLEY-LDMFyKLGAAGRALRKLgAI 118
                 6778******************************99999998988634557777777733333212233344444411.22222344444444443123 PP

      AAA_31  96 elvelekk.......eeilkell.ekv..kdeYDyiiiDcpPs 128
                 +++++          +  +ke+  +k   +  YD +++D+pP+
  KIR62671.1 119 DFATTIAPglrdvllTGKVKEATtRKAgqRRAYDAVVLDAPPT 161
                 3333333344433332223333312221144588888888886 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   3.3e-08   2.8e-05       6      40 ..      19      53 ..      16      77 .. 0.85
   2 ?   -3.5   0.0       6.6   5.7e+03      88     107 ..     191     210 ..     183     224 .. 0.63

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.3e-08
        ParA  6 iavlSgKGGVGKStvavnlAlaLakkglkvgllDa 40
                + v+ gKGG GK++va+ lAlaLa+ g ++ l+ +
  KIR62671.1 19 LNVVTGKGGTGKTSVAAALALALAADGRRTLLVEV 53
                6799***********************99877654 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 6.6
        ParA  88 avvwrGpmkskaikqllkdv 107
                 a + r+pm +  +  ll+++
  KIR62671.1 191 AALLRSPMTAVHVVTLLEEM 210
                 55566666666666665554 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   3.1e-06    0.0026      10      39 ..      25      54 ..      19      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.1e-06
    CBP_BcsQ 10 RGGvGttsllaaLawalhelgesvlviDls 39
                +GG+G+ts++aaLa al + g + l++++ 
  KIR62671.1 25 KGGTGKTSVAAALALALAADGRRTLLVEVE 54
                7*************************9875 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.3   2.3e-06     0.002      34      68 ..      18      54 ..      12      66 .. 0.80
   2 ?   -1.9   0.0       2.5   2.1e+03      75     149 ..      87     157 ..      74     158 .. 0.56
   3 ?   -1.7   0.1       2.2   1.8e+03      60      94 ..     255     288 ..     248     311 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.3e-06
      AAA_25 34 elallaGapgtGKttlaldlalava.tGkpwlg.pva 68
                 l++++G +gtGKt +a  lala+a  G+  l  +v+
  KIR62671.1 18 RLNVVTGKGGTGKTSVAAALALALAaDGRRTLLvEVE 54
                5789*********************888876664443 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.5
      AAA_25  75 lyvsaEdsedelrrRlravgealrddarllvldlagveslpLfakdrggtlltadv.daleaaieevegvrlvviD 149
                 l v+aE++  e    ++++g+a r+ ++l ++d a+      +a++ ++ llt++v +a  +++ ++  ++ vv+D
  KIR62671.1  87 LAVDAEEALLEYLDMFYKLGAAGRALRKLGAIDFATT-----IAPGLRDVLLTGKVkEATTRKAGQRRAYDAVVLD 157
                 5555555555555555555555555556666655543.....3455556665555513344555555557888877 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.2
      AAA_25  60 GkpwlgpvapeqgkVlyvsaEdsedelrrRlravg 94 
                 G   +g ++  + +V  ++aE + +++rr l+  +
  KIR62671.1 255 GLLAAG-LPADRDTVAGLAAEARDQRVRRELEDSL 288
                 555555.4446777888888888888888887765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.6   1.1e-05    0.0095      18      52 ..      17      51 ..      11      62 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-05
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrvigl 52
                +r+ v+tG  GtGKt + +al+ a++a+g+r +++
  KIR62671.1 17 ARLNVVTGKGGTGKTSVAAALALALAADGRRTLLV 51
                6899************************9887765 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.9e-05     0.025       7      43 ..      23      59 ..      18      94 .. 0.89
   2 ?   -2.2   0.0       2.3     2e+03      95     109 ..     146     160 ..     133     178 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.9e-05
                -SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-H CS
        MipZ  7 nekGGsGksttavhvavaLlkkGarvaaidldlrqrt 43
                  kGG+Gk+ +a  +a aL++ G r   ++++ rq  
  KIR62671.1 23 TGKGGTGKTSVAAALALALAADGRRTLLVEVEGRQGI 59
                569*****************************99965 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.3
                 HHHHH-SEEEEE--S CS
        MipZ  95 dleaeldfividtPG 109
                  + + +d +v+d+P 
  KIR62671.1 146 GQRRAYDAVVLDAPP 160
                 456788999999984 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   3.6e-05     0.031      51      83 ..      21      53 ..      15      57 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.6e-05
   IstB_IS21 51 vllGpsGvGKshlaialgveavraglsvlfvrv 83
                v++G  G+GK+ +a+al+ + +++g ++l v v
  KIR62671.1 21 VVTGKGGTGKTSVAAALALALAADGRRTLLVEV 53
                789***********************9988776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   4.0   5.6e-05     0.048      25      82 ..      18      68 ..       2     324 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.6e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekdggif..lrgkcdqlesaipysalaqalareell 82
                +l +++G  G+GK+s++ +l+ al +dg  +  ++ + +q         +aq++ + e l
  KIR62671.1 18 RLNVVTGKGGTGKTSVAAALALALAADGRRTllVEVEGRQG--------IAQLFGT-EPL 68
                6778*****************99999965552344444444........5555433.222 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.4e-05     0.046       1      42 [.      19      66 ..      19      98 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.4e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl......drdvegltdelsggggi 42
                lnv++G+ g+GK+++  al l+  +      + +veg++ +++ +g++
  KIR62671.1 19 LNVVTGKGGTGKTSVAAALALALAAdgrrtlLVEVEGRQGIAQLFGTE 66
                79*******************998666666666666666666555555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.7e-05     0.066      21      44 ..      19      42 ..      16      75 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.7e-05
      AAA_23 21 ltlItGpNGaGKTTildAiklaLy 44
                l+++tG+ G+GKT++  A+ laL 
  KIR62671.1 19 LNVVTGKGGTGKTSVAAALALALA 42
                9*********************96 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   8.7e-05     0.075      21      49 ..      19      47 ..      15      66 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.7e-05
                EEEEE--TTSSTTHHHHHHHHHHHHTTS- CS
        PhoH 21 ivfaiGpaGtGKtylavalavealkkkkv 49
                + +++G+ GtGKt +a ala+++  +++ 
  KIR62671.1 19 LNVVTGKGGTGKTSVAAALALALAADGRR 47
                67899****************99887765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00014      0.12       7      55 ..      19      61 ..      16     107 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00014
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskd 55
                + vvtG  GtGKT +++ l+  l ++      ++++++v++ +  + ++
  KIR62671.1 19 LNVVTGKGGTGKTSVAAALALALAAD------GRRTLLVEVEGRQGIAQ 61
                669*******************9765......88888888777665555 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00011     0.093       5      36 ..      22      53 ..      18      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
   Fer4_NifH  5 iyGkGGiGksttsqnlsaalaemgkkvlivGC 36
                + GkGG Gk+  ++ l+ ala++g++ l+v  
  KIR62671.1 22 VTGKGGTGKTSVAAALALALAADGRRTLLVEV 53
                78*************************99865 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00041      0.35       2      28 ..      19      45 ..      18      52 .. 0.88
   2 ?   -1.8   0.0       2.9   2.5e+03     129     165 ..     246     286 ..     242     287 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00041
                CEEEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaegk 28
                l +++G+ G GKT  ++ lala+a++ 
  KIR62671.1 19 LNVVTGKGGTGKTSVAAALALALAADG 45
                6689*******************9865 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.9
                 CCCHHHHCTTSSCE......EEEE--TCCHHHHHHHHCTTT CS
       NACHT 129 pralrdleeqleea....ivlevegfsesrrkqlvrkyfsd 165
                 p +  +l+++l  a     +  v+g+ ++ r+q vr+ ++d
  KIR62671.1 246 PVTAAELRRGLLAAglpaDRDTVAGLAAEARDQRVRRELED 286
                 55666666666666666666789999999999999998876 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00024       0.2       2      39 ..      19      56 ..      18      84 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00024
         Zot  2 islvtGapGsgKtsgavkkdllpalkegRkiitnidGl 39
                +++vtG++G+gKts+a    l  a    R +  +++G 
  KIR62671.1 19 LNVVTGKGGTGKTSVAAALALALAADGRRTLLVEVEGR 56
                5789*************998887777777788899984 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2    0.0002      0.17       3      34 ..      19      48 ..      17      60 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
     DUF2075  3 vvlVtGvaGtGKtvvllnllaeleddeeerta 34
                + +VtG+ GtGKt v+ +l+ +l   +++r++
  KIR62671.1 19 LNVVTGKGGTGKTSVAAALALAL--AADGRRT 48
                569*****************999..5555554 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00028      0.24      21      55 ..      14      48 ..       8      54 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00028
                ETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTT CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 21 pfsksftaivGpNGSGKsnlldAilFvLGersakk 55
                ++  ++++++G+ G GK+++  A+   L  +  ++
  KIR62671.1 14 QWPARLNVVTGKGGTGKTSVAAALALALAADGRRT 48
                566789******************99998766655 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00032      0.27       6      33 ..      21      55 ..      18     157 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00032
      AAA_24  6 liyGpsgiGKTtlakel.......gpkplfidtek 33
                +++G+ g+GKT++a+ l       g ++l++ +e+
  KIR62671.1 21 VVTGKGGTGKTSVAAALalalaadGRRTLLVEVEG 55
                699**************999999999999999887 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00039      0.33       8      42 ..      23      57 ..      18      62 .. 0.86
   2 ?   -3.7   0.1       6.7   5.7e+03     133     153 ..     193     213 ..     190     224 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00039
       VirC1  8 slkGGaGkttalmglcsalasdgkrvalfeadenr 42
                + kGG+Gkt+   +l  ala+dg+r  l e +  +
  KIR62671.1 23 TGKGGTGKTSVAAALALALAADGRRTLLVEVEGRQ 57
                569**********************9999977655 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6.7
       VirC1 133 lllaeelaipvailrqrvPvr 153
                 ll +   a++v  l + +Pv+
  KIR62671.1 193 LLRSPMTAVHVVTLLEEMPVQ 213
                 555666677777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 2272.32
//
Query:       KIR62672.1  [L=233]
Description: hypothetical protein TK50_16930 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00043   20.6   0.2    0.00059   20.1   0.2    1.2  1  DUF4878   Domain of unknown function (DUF4878)
  ------ inclusion threshold ------
       0.12   12.6   0.2       0.16   12.2   0.2    1.2  1  MecA_N    NTF2-like N-terminal transpeptidase domain


Domain annotation for each model (and alignments):
>> DUF4878  Domain of unknown function (DUF4878)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   6.6e-08   0.00059       4     100 ..     125     215 ..     121     230 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.6e-08
     DUF4878   4 gekqtpeeavknFleavk.eGdvedaikyltestreedalaeklkgkfkelkakaekkkekqgnlkeveikdeeesgdtAvvtVkvtlkdGkekkeei 100
                 g+k +p+ av+nFl av+ e d+++a+ y++ + r+ ++++ k     +elk  ae  +++    ++ ++ +  + gd+A+vt  vt++ ++ek   +
  KIR62672.1 125 GAK-EPAVAVENFLTAVYrERDARKAAGYVCAAARDDRKITAK----VTELKRYAEQYSDARFRWTSPKVDN--QTGDRATVTTRVTMTTSDEKVADQ 215
                 333.9************7478***************9998888....5566666999999999999999976..568888888777777777765544 PP

>> MecA_N  NTF2-like N-terminal transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   1.8e-05      0.16       6     100 ..     133     228 ..     128     231 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.8e-05
                 HHHHHHHH.HTT-HHHHHCTB--BS...SBSS-HHHHHHHHHHHCCCTT-EEEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEEEETTEE CS
      MecA_N   6 aetFldaw.akgdykkaasllseqs...kkeisekeavekyqaiydglqvkklkieakkvkkdkentaeipykvsmntpagkiktldskltltkeeeew 100
                 +e+Fl a   + d+ kaa+++  ++   +k   +++   +y + y+ +    +     kv+++  + a+++ +v+m+t+ +k++++d+  t++++ + w
  KIR62672.1 133 VENFLTAVyRERDARKAAGYVCAAArddRKITAKVTELKRYAEQYSDARFRWT---SPKVDNQTGDRATVTTRVTMTTSDEKVADQDLRFTVVQKTGWW 228
                 56666554134466666666655553334444444555566666665555444...44889999999*************************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 1460.10
//
Query:       KIR62673.1  [L=162]
Description: hypothetical protein TK50_16935 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1118.62
//
Query:       KIR62674.1  [L=270]
Description: beta-lactamase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-13   50.9  11.7    5.2e-13   49.4  11.6    1.9  1  Lactamase_B    Metallo-beta-lactamase superfamily
    6.7e-08   32.3   2.9    6.9e-07   29.0   2.8    2.2  1  Lactamase_B_2  Beta-lactamase superfamily domain
    8.9e-06   25.6   0.0      2e-05   24.5   0.0    1.6  1  BLACT_WH       Beta-lactamase associated winged helix domain
    0.00026   20.9   0.0    0.00049   20.0   0.0    1.4  1  Lactamase_B_3  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4  11.6   1.2e-16   5.2e-13       2     197 .]      32     194 ..      31     250 .. 0.91

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 1.2e-16
                  CCCSSEEEEEE..ETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHH CS
  Lactamase_B   2 gpdpvnsylie..gdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkgll 97 
                  ++d++n+++++   ++ ++++D+G   +  +aa           +v +v++TH+H+DH+ g + l+e  + +++   + a+++ ++ +          
   KIR62674.1  32 TLDGTNTWVLRagPGEPALVVDPGPADDGHLAA------IAAHTPVATVLITHGHPDHTEGSPRLRELLGGAPVRAVDPAHSHGGPPL---------- 113
                  6799********888****************97......7****************************99999998888888888888.......... PP

                  TTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHHHHHCHSEEEE CS
  Lactamase_B  98 lagvsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridltlrgaevrdpsdaekyldsllklaglkaevlvp 195
                               +     ag  ++  + +g++  ++++ ve g+++v++tGD++l + t  +          ++++ + y dsl+ l + +    +p
   KIR62674.1 114 -----------AADAVLHAAGLTVRALPAPGHTADSVCFLVERGDERVVLTGDTILGRGTTVVAH--------PDGQLGAYFDSLELLSTYRGIPALP 192
                  ...........68888899999999999****************************999999999........7888888888887777777666666 PP

                  SS CS
  Lactamase_B 196 gH 197
                  gH
   KIR62674.1 193 GH 194
                  66 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   2.8   1.5e-10   6.9e-07       4     143 ..      51     156 ..      49     163 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.5e-10
                    EES--TTHHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-TTSEEEEC CS
  Lactamase_B_2   4 LiDagpdlrqqalralqPvelrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleeepavnvheldwgesfelg 99 
                    ++D+gp   ++ l a     + ++  p++ Vl+th+H DH++g + lre       l++ + v+av  a+++    + +      +l+++  ++ +
     KIR62674.1  51 VVDPGPADDGH-LAAI----AAHT--PVATVLITHGHPDHTEGSPRLRE-------LLGGAPVRAVDPAHSH----GGP------PLAADAVLHAA 122
                    78888885555.5454....4567..***********************.......5566667777766632....333......57766666665 PP

                    STTEEEEEEEE-EE--CTCCE-TTTSEEEEEECTTEEEEEESS- CS
  Lactamase_B_2 100 dggleitatparhksgrrldrnagdtlGlriegggkrvyyigDt 143
                      gl+++a pa++ ++          + +++e+g++rv+ +gDt
     KIR62674.1 123 --GLTVRALPAPGHTAD--------SVCFLVERGDERVVLTGDT 156
                    ..899999999999999........9999999999999999998 PP

>> BLACT_WH  Beta-lactamase associated winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   4.4e-09     2e-05       1      30 [.     229     258 ..     229     260 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 4.4e-09
    BLACT_WH   1 TveelVkviYkdvpeslhpaAergvlahLe 30 
                 T+ e+V+++Y+dv++sl+ aAe +v+a L+
  KIR62674.1 229 TAPEVVARVYADVDRSLWWAAEWSVRAQLD 258
                 899***********************9886 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.1e-07   0.00049       6     113 ..      35     155 ..      31     160 .. 0.60

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.1e-07
  Lactamase_B_3   6 ghnsflleta.g.arilvDPfka...nlgyeppaeeaDlvlisqaledHah.letlkql..aenvkvleeges.....levg.gleiravatshda 87 
                    g n+++l+ + g   ++vDP+ a   +l   +    +  vli+++++dH +  ++l++l     v+ +++ +s     l+++  l   + +  + +
     KIR62674.1  35 GTNTWVLRAGpGePALVVDPGPAddgHLAAIAAHTPVATVLITHGHPDHTEgSPRLRELlgGAPVRAVDPAHShggppLAADaVLHAAGLTVRALP 130
                    89******955669*******66544566666669999***********87244566666744444444433333333333312233333333344 PP

  Lactamase_B_3  88 vggsergenngflleqdgltiyhlGh 113
                     +g++ +  ++fl+e ++ +++  G+
     KIR62674.1 131 APGHTAD-SVCFLVERGDERVVLTGD 155
                    4445544.366666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 1654.29
//
Query:       KIR62675.1  [L=1193]
Description: adenylyl cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-24   84.5   0.0    9.5e-24   84.0   0.0    1.2  1  Guanylate_cyc  Adenylate and Guanylate cyclase catalytic doma
    3.9e-14   53.4   1.3    3.9e-14   53.4   1.3    3.8  4  AAA_16         AAA ATPase domain
    3.1e-13   49.8  27.1    8.7e-08   31.9  12.2    3.2  2  TPR_MalT       MalT-like TPR region
    2.3e-11   43.8  47.5     0.0061   16.8   3.3    8.1  7  TPR_12         Tetratricopeptide repeat
    0.00014   21.8   0.1    0.00028   20.8   0.1    1.4  1  DZR            Double zinc ribbon
    0.00017   21.2   2.0    0.00029   20.4   2.0    1.4  1  zinc_ribbon_2  zinc-ribbon domain
     0.0004   20.3  32.5       0.27   11.4   0.3    8.3  8  TPR_2          Tetratricopeptide repeat
    0.00061   19.1   2.6     0.0012   18.1   2.6    1.5  1  zf-ribbon_3    zinc-ribbon domain
    0.00065   20.0   0.0     0.0055   17.0   0.0    2.4  1  AAA_22         AAA domain
     0.0039   17.7   2.9     0.0039   17.7   2.9   13.7 10  TPR_4          Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.027   14.7   1.9        5.3    7.3   0.0    3.6  4  ANAPC3         Anaphase-promoting complex, cyclosome, subunit
      0.037   13.9   7.8        2.6    8.0   0.1    5.3  6  TPR_1          Tetratricopeptide repeat
       0.12   12.2   0.1       0.41   10.5   0.1    1.9  1  HTH_ParB       HTH domain found in ParB protein
       0.36   11.1   8.1        2.2    8.7   0.0    4.5  4  TPR_8          Tetratricopeptide repeat
       0.54   10.4   2.0         36    4.5   0.8    3.3  2  ANAPC5         Anaphase-promoting complex subunit 5


Domain annotation for each model (and alignments):
>> Guanylate_cyc  Adenylate and Guanylate cyclase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0     8e-27   9.5e-24       4     179 ..      33     209 ..      30     213 .. 0.93

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 8e-27
  Guanylate_cyc   4 esydevtilFadIvgftalssahspievvklLnelyarfdelldekkvykvktiGdaymvvsglpeekaahaaklaelaLdmlealeevaves... 96 
                     + + vt+lF d+ +ft+ s+  +p+ v  +   + a +   ++  ++  +k  Gd +m+v+g+p +++++a+++++ aL m  a++ v  ++   
     KIR62675.1  33 AERRVVTVLFGDLSDFTSWSEDLDPERVGAVTDRVLAALAGAVKTFGGHVDKLTGDGIMAVFGAPVAHEDDAERAVRAALSMQRAVRRVLDDErgg 128
                    66788*********************************************************************************8888877677 PP

  Guanylate_cyc  97 keglkvrvGihtGpvvagviGakkprydvwGntvnlAsrmestgkagkiqvseetyellkeeqfeltergevevkG.kgklety 179
                       l +rvG++tG v+ag+     ++y+v+G+tvn+A+r+   +  g +   ++t +  + +  +++++ +  +kG ++++e+y
     KIR62675.1 129 GAPLGLRVGLNTGDVIAGIQ--AAIEYTVIGDTVNTAARLADAAAVGAVYAGARTSAATR-HVASWRALRPLRLKGkREPVEAY 209
                    79****************97..999**************************999999988.9999***********44666666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   1.3   3.2e-17   3.9e-14       1     169 [.     229     442 ..     229     443 .. 0.75
   2 ?   -1.9   0.3       3.1   3.7e+03      72     136 ..     511     599 ..     491     626 .. 0.49
   3 ?   -2.1   0.5       3.7   4.4e+03      55     116 ..     664     716 ..     605     812 .. 0.59
   4 ?   -0.6   0.1       1.3   1.5e+03     106     138 ..     977    1020 ..     886    1022 .. 0.63

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 3.2e-17
      AAA_16   1 rlvGReeeleqLlsale.rvrsgrpelvllsGesGvGKsslvrellralekd...........ggiflrgkcdqlesaipysalaqalareellrqlld 87 
                 ++vGRe e+ +++  l   + +g+p+++l + e+G+GKs+ + e+ r + +            g+ +l+ +c  +++ +++++la++  r      l +
  KIR62675.1 229 PFVGRETEIGRVAGRLAeVIDRGEPRVLLMTAEAGIGKSRFAAEVERLAAGYdvgagryaahtGARVLSVRCAAFGERRRLAPLADLV-R-A-AVGLPN 324
                 69**********8877747777788*********************844444799999999988999********7776665566666.3.2.333333 PP

      AAA_16  88 eaesaeleawrekleeala......................................avpelagaeasrllellkrllallsrderplvlvlDdlqwad 148
                 +a++a+ +++ e+ +++l+                                       +++  +a+a ++ +++++ll+ l+  e plv+++Ddl++a 
  KIR62675.1 325 DAATALTRPAVEERLRRLNqrigrlgddappvaadqllallgyadlpagspadqgewGGGAQQPADADAVPNAVADLLSALAA-EAPLVVLVDDLHDAT 422
                 33333333333333333334666888988888889999999999999988888888866666677779999999999977777.788************ PP

      AAA_16 149 easlqllaaLlrlleskpllv 169
                 +++  +l  +l++   +p+lv
  KIR62675.1 423 TETIRALGVTLSRIA-GPVLV 442
                 *99999988887754.46665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.1
      AAA_16  72 laqalareellrqlldeaesaeleawrekleeala..............avpelagaea...........srllellkrll.allsrderp 136
                 l+++l +++ l++++d+++  + + wr   +++l+               +++l+++++           +    +l +l  +++ rd+rp
  KIR62675.1 511 LVTLLMERGALTAVADRSAP-ANSGWRL-APGSLGsrllsrdlaavlaaRIDALPPDARsvlrdaavvgdTVPDGALEALReQRAGRDGRP 599
                 55555555555555555333.3333443.23333333333333333344444444444433333344443333344444445555555555 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.7
      AAA_16  55 flrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea 116
                 ++ g +++           +a+ +e++ r+ + +++ +++++++++  + l+ v++l +a++
  KIR62675.1 664 AAPGGFTDT--------ARDAFVAEHVERAAALADAVKLRPDAPARTVAPLG-VAALGRAAR 716
                 444444444........33333333333333333333333333333333333.222222222 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.3
      AAA_16  106 a...........avpelagaeasrllellkrllallsrderplv 138 
                               v +    e+++ ++ll++++++++r+++pl+
  KIR62675.1  977 DdwgrgfalvarGVVARGLGEPEHAADLLADAMSYAERTSHPLL 1020
                  03333443333244444444449999999999999999999875 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   9.9   4.6e-07   0.00055       5     124 ..     748     869 ..     746     924 .. 0.78
   2 !   31.9  12.2   7.3e-11   8.7e-08      14     265 ..     915    1167 ..     901    1189 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.6e-07
    TPR_MalT   5 alrAllaiasgdaeralelArqALallpeddllariaatavlGeasllqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheAlety 103
                 +++A   ++ g++++al++A+++ a    dd  +r+ a+++ G a+++ Gd  +A++ +qea ++a   + ++  + a++++++  +  GrL +A    
  KIR62675.1 748 VVHARALLQVGRPGDALAYAEKI-AANAGDDAGTRASALLLAGQAHQTLGDQGRAVACWQEALQVAGVGGLPNLRASAMRRLGMADFIAGRLGQASSRL 845
                 678999999************97.55667777***************************************************************6544 PP

    TPR_MalT 104 eqalql...ateqglqqlplvgfl 124
                   + q+   a++ ++q++ l +++
  KIR62675.1 846 AASYQVsltAQDRRGQAWSLQNLA 869
                 444433111666666666665544 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 7.3e-11
    TPR_MalT   14 sgdaeralelArqALallpeddllar.iaatavlGeasllqGdleaAlqalqeaek.larqadslhvallallqqaeilvaqGrLheAletyeqalq 108 
                   g+ ++a++lAr +L + +     +  ++ +av + a    G+l +A  a + a++ +a   d +    +al+  + +++  G+ + A+++  +a+ 
  KIR62675.1  915 AGRLREARRLARVFLPFGERVGEAWAvGTLRAVEAFAGAELGELSEADGAARRAYRdFAEVSDDWG-RGFALVARGVVARGLGEPEHAADLLADAMS 1010
                  47777788888888877776555555466667777777889***********99973678888875.6999************************** PP

    TPR_MalT  109 lateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGielleqlepeaald..ayvllarialaqGdleeAetllekaeelaresnfhvdwlan 203 
                  +a++++ +   l g++ +l++ + ++ +d+e+Ae+ +++ ++ +e ++p+a ++   +vlla  +la Gd  +A  ll+     a++++  ++ ++ 
  KIR62675.1 1011 YAERTSHPL--LTGMAGTLRGFVALDLGDCETAERSARAVLTAVEPHNPQAPAQvgPRVLLATARLAAGDPATAVGLLAPVATAAANAPSLLFSRQQ 1105
                  *****9996..5555555799**************************7766555338********************************99988888 PP

    TPR_MalT  204 aeevrvrlwlaqgdlaaaerwleaael.psdd.dnhflelelrnlarvllalgrydeAleller 265 
                  +++    ++la+g+l++a++w++ a   p+ d ++ +  + + +la +l a gr +eAl+  e+
  KIR62675.1 1106 TMARYASALLAHGQLDQALDWAHRAVAvPAEDvRSQV--IAVSVLAEALAACGRPAEALARAEE 1167
                  888888999****************631333202333..5678999999999999998875554 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.1     0.027        32      47      76 ..     710     739 ..     704     740 .. 0.78
   2 !   16.8   3.3   5.1e-06    0.0061      10      74 ..     751     811 ..     747     812 .. 0.94
   3 !   16.8   0.3   5.3e-06    0.0064       2      61 ..     821     878 ..     820     880 .. 0.91
   4 ?    2.8   0.5      0.12   1.4e+02      26      68 ..     885     925 ..     876     927 .. 0.84
   5 !    6.7   1.0    0.0076       9.1      15      76 ..     954    1013 ..     949    1014 .. 0.87
   6 !    7.0   0.0    0.0059         7       9      67 ..    1028    1085 ..    1022    1087 .. 0.90
   7 !   13.5   5.0   5.4e-05     0.064       5      75 ..    1107    1172 ..    1103    1174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.027
      TPR_12  47 tlrnLgrlyralgryeeAlelleealaiae 76 
                 +l   +r  +++g++++A+e+ e+a ++a+
  KIR62675.1 710 ALGRAARRSLQAGEPAAAVEYAERAAELAR 739
                 566666666789999999999999999987 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 5.1e-06
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 a +l++ gr  +Al++ ek  + a    G+d    a++l   g++++ lg++  A++  +eal++
  KIR62675.1 751 ARALLQVGRPGDALAYAEKIAANA----GDDAGTRASALLLAGQAHQTLGDQGRAVACWQEALQV 811
                 78899***************8888....899999****************************987 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 5.3e-06
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgry 61 
                 +a+a+++l+++ + +gr+ +A + l +++++   +   d+ + a++l+nL+++   +g++
  KIR62675.1 821 RASAMRRLGMADFIAGRLGQASSRLAASYQVSLTA--QDRRGQAWSLQNLAWVTTTRGDF 878
                 5788889*************************766..78889***********9999998 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.12
      TPR_12  26 lekaleiarrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                 l +a +++ +l +p+    a+ + + + + +++gr++eA++l 
  KIR62675.1 885 LGRAARLFAELKDPYG--RAWLRGTTAFARLLAGRLREARRLA 925
                 6689999999966665..*********************9986 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.0076
      TPR_12   15 rlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76  
                  +lg++ eA    ++a++ + ++  +d+ +   +l + g + r lg++e A +ll +a+  ae
  KIR62675.1  954 ELGELSEADGAARRAYRDFAEV-SDDW-GRGFALVARGVVARGLGEPEHAADLLADAMSYAE 1013
                  5788888999999999999888.4677.99***************************98776 PP

  == domain 6  score: 7.0 bits;  conditional E-value: 0.0059
      TPR_12    9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlel 67  
                  ++ v + lg+++ A++  +++l +++  ++p+ p+ +  +  L+++ +a+g+++ A+ l
  KIR62675.1 1028 RGFVALDLGDCETAERSARAVLTAVEP-HNPQAPAQVGPRVLLATARLAAGDPATAVGL 1085
                  899**********************66.8************************999865 PP

  == domain 7  score: 13.5 bits;  conditional E-value: 5.4e-05
      TPR_12    5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75  
                  ++ ++a++l++ g++d+Al++ ++a+++      +d    +++   L++++ a gr++eAl++ eea+++a
  KIR62675.1 1107 MA-RYASALLAHGQLDQALDWAHRAVAVP----AEDVRSQVIAVSVLAEALAACGRPAEALARAEEAVRLA 1172
                  55.89********************6665....477888************999**************987 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   2.4e-07   0.00028       1      26 [.       3      28 ..       3      45 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.4e-07
         DZR  1 CpqCgeelppdarfCseCgtklkava 26
                Cp Cg+   p+arfC++Cg++l+a+a
  KIR62675.1  3 CPVCGTVAVPGARFCHNCGAALPAAA 28
                9********************98655 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   2.0   2.5e-07   0.00029       2      23 .]       3      24 ..       2      24 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.5e-07
  zinc_ribbon_2  2 CpnCGaelqdnakFCpyCGtpl 23
                   Cp CG+   ++a+FC +CG+ l
     KIR62675.1  3 CPVCGTVAVPGARFCHNCGAAL 24
                   *******************976 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   1.3    0.0065       7.8       3      32 ..     710     739 ..     708     740 .. 0.87
   2 ?    2.0   0.2      0.25   2.9e+02       8      28 ..     751     771 ..     751     777 .. 0.86
   3 !   11.4   0.3   0.00023      0.27       2      29 ..     783     810 ..     782     812 .. 0.92
   4 ?   -1.3   0.0       2.7   3.3e+03       2      20 ..     823     841 ..     822     843 .. 0.87
   5 ?   -2.5   0.1       6.5   7.7e+03       9      23 ..     910     924 ..     908     926 .. 0.78
   6 ?    4.6   0.0     0.036        43       3      30 ..     984    1011 ..     982    1014 .. 0.87
   7 ?    5.8   0.2     0.015        18       6      29 ..    1109    1132 ..    1105    1133 .. 0.89
   8 !    7.1   0.8    0.0057       6.8       7      31 ..    1148    1172 ..    1143    1174 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0065
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldP 32 
                 al + ++  +++g+++ A+e+ e+A el+ 
  KIR62675.1 710 ALGRAARRSLQAGEPAAAVEYAERAAELAR 739
                 6677788889*****************986 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.25
       TPR_2   8 GlayyklgdyeeAleafekAl 28 
                 ++a+++ g++ +Al++ ek  
  KIR62675.1 751 ARALLQVGRPGDALAYAEKIA 771
                 6899**************976 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00023
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                  al   G+a+  lgd  +A++++++Al+
  KIR62675.1 783 SALLLAGQAHQTLGDQGRAVACWQEALQ 810
                 688999*********************8 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 2.7
       TPR_2   2 ealynlGlayyklgdyeeA 20 
                  a  +lG+a + +g++ +A
  KIR62675.1 823 SAMRRLGMADFIAGRLGQA 841
                 68899*********99887 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 6.5
       TPR_2   9 layyklgdyeeAlea 23 
                  a + +g++ eA+++
  KIR62675.1 910 FARLLAGRLREARRL 924
                 5667899*****986 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.036
       TPR_2    3 alynlGlayyklgdyeeAleafekAlel 30  
                  al ++G +++ lg++e A++++  A ++
  KIR62675.1  984 ALVARGVVARGLGEPEHAADLLADAMSY 1011
                  8999****************99888765 PP

  == domain 7  score: 5.8 bits;  conditional E-value: 0.015
       TPR_2    6 nlGlayyklgdyeeAleafekAle 29  
                  + + a+++ g++++Al++  +A++
  KIR62675.1 1109 RYASALLAHGQLDQALDWAHRAVA 1132
                  7899*****************985 PP

  == domain 8  score: 7.1 bits;  conditional E-value: 0.0057
       TPR_2    7 lGlayyklgdyeeAleafekAleld 31  
                  l++a+++ g+++eAl+  e+A++l+
  KIR62675.1 1148 LAEALAACGRPAEALARAEEAVRLA 1172
                  89********************996 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   2.6     1e-06    0.0012       4      24 ..       2      22 ..       2      24 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1e-06
  zf-ribbon_3  4 rCPnCGaplssddnvCpyCGt 24
                 +CP CG+++ +++++C +CG+
   KIR62675.1  2 TCPVCGTVAVPGARFCHNCGA 22
                 5*******************7 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.6e-06    0.0055       5     133 ..     253     450 ..     249     453 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.6e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee......erpevvfvtlpsst...sskdllrellralglelka........................ 70 
                  ++l+ t+e+G+GK++ ++++ + +  +            +++v++v +++ +    ++ l+  +  a+gl+++a                        
  KIR62675.1 253 PRVLLMTAEAGIGKSRFAAEVERLAAGYDVG-AgryaahTGARVLSVRCAAFGerrRLAPLADLVRAAVGLPNDAataltrpaveerlrrlnqrigrlg 350
                 678999*****************98544444.25999999*************5444444556666778888888*******99999999999999999 PP

      AAA_22  71 ....................................erlsseellealeqalrarav..ielliiDEaqhlrseealeeL.rsllnlsrkgvqliLvGt 130
                                                     ++++ +++ +a+++ l+a a+  + ++++D+ +   + e ++ L ++l+     +v ++L G 
  KIR62675.1 351 ddappvaadqllallgyadlpagspadqgewgggaqQPADADAVPNAVADLLSALAAeaPLVVLVDDLHDA-TTETIRALgVTLSR-IAGPVLVLLLGR 447
                 99999999999999999999999999999999999999999999999999999999999999999999999.88888888777777.677888888888 PP

      AAA_22 131 pel 133
                 pel
  KIR62675.1 448 PEL 450
                 887 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   4.6       5.7   6.8e+03       3      25 ..     710     732 ..     708     733 .. 0.80
   2 !    8.4   0.4    0.0032       3.8       5      22 ..     748     765 ..     747     769 .. 0.86
   3 ?    5.7   3.3     0.024        29       1      26 []     782     807 ..     782     807 .. 0.92
   4 ?   -1.3   1.1       4.4   5.3e+03       2      23 ..     823     844 ..     822     847 .. 0.80
   5 ?    4.0   7.3     0.085     1e+02       1      25 [.     902     926 ..     902     926 .. 0.93
   6 ?    5.9   1.5     0.021        25       3      25 ..     984    1006 ..     982    1007 .. 0.93
   7 ?    3.7   0.4       0.1   1.2e+02       5      25 ..    1026    1046 ..    1022    1047 .. 0.87
   8 !    9.8   0.7    0.0011       1.3       3      24 ..    1065    1086 ..    1063    1088 .. 0.88
   9 ?    5.4   3.3      0.03        36       5      26 .]    1108    1129 ..    1104    1129 .. 0.86
  10 !   17.7   2.9   3.3e-06    0.0039       5      26 .]    1146    1167 ..    1143    1167 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 5.7
       TPR_4   3 allaLArallalGdldeAralle 25 
                 al   Ar  l++G++++A + +e
  KIR62675.1 710 ALGRAARRSLQAGEPAAAVEYAE 732
                 6777899999********87665 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0032
       TPR_4   5 laLArallalGdldeAra 22 
                 ++ Arall+ G++ +A+a
  KIR62675.1 748 VVHARALLQVGRPGDALA 765
                 678*************98 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.024
       TPR_4   1 arallaLArallalGdldeAraller 26 
                 a all+ ++a++ lGd  +A a +++
  KIR62675.1 782 ASALLLAGQAHQTLGDQGRAVACWQE 807
                 5799******************9975 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 4.4
       TPR_4   2 rallaLArallalGdldeAral 23 
                  a   L++a + +G+l +A   
  KIR62675.1 823 SAMRRLGMADFIAGRLGQASSR 844
                 577789999999******9655 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.085
       TPR_4   1 arallaLArallalGdldeAralle 25 
                 a+++   A a l++G+l eAr+l++
  KIR62675.1 902 AWLRGTTAFARLLAGRLREARRLAR 926
                 6888999****************98 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.021
       TPR_4    3 allaLArallalGdldeAralle 25  
                  al+a++ ++  lG+++ A++ll+
  KIR62675.1  984 ALVARGVVARGLGEPEHAADLLA 1006
                  899*****************996 PP

  == domain 7  score: 3.7 bits;  conditional E-value: 0.1
       TPR_4    5 laLArallalGdldeAralle 25  
                   +++ ++l+lGd ++A++ ++
  KIR62675.1 1026 TLRGFVALDLGDCETAERSAR 1046
                  67999*************998 PP

  == domain 8  score: 9.8 bits;  conditional E-value: 0.0011
       TPR_4    3 allaLArallalGdldeArall 24  
                   +++LA a la+Gd+++A  ll
  KIR62675.1 1065 PRVLLATARLAAGDPATAVGLL 1086
                  5899**************9887 PP

  == domain 9  score: 5.4 bits;  conditional E-value: 0.03
       TPR_4    5 laLArallalGdldeAraller 26  
                  + +A alla G+ld+A+++++r
  KIR62675.1 1108 ARYASALLAHGQLDQALDWAHR 1129
                  66799**************986 PP

  == domain 10  score: 17.7 bits;  conditional E-value: 3.3e-06
       TPR_4    5 laLArallalGdldeAraller 26  
                  ++LA+al+a G+++eA+a +e+
  KIR62675.1 1146 SVLAEALAACGRPAEALARAEE 1167
                  79*****************997 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0045       5.3      34      81 ..     719     769 ..     714     770 .. 0.91
   2 ?    2.4   0.1      0.15   1.8e+02       7      47 ..     762     806 ..     761     812 .. 0.69
   3 ?   -1.0   0.1       1.7   2.1e+03      19      49 ..    1053    1089 ..    1036    1125 .. 0.65
   4 ?    4.1   0.3     0.047        56      29      76 ..    1110    1162 ..    1081    1168 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0045
                 HHTT-HHHHHHHHHCT.SHHHC-H..HHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  34 ylngqykrAyellrka.klnsksl..gcrylfAqcllkLkkyeeAiaaLek 81 
                 +++g+   A e++++a +l+   l  + r+++A++ll+ ++  +A+a  ek
  KIR62675.1 719 LQAGEPAAAVEYAERAaELARDGLpaADRVVHARALLQVGRPGDALAYAEK 769
                 6789999*********999999999999******************98776 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.15
                 HHHHHHHHHH....HHH--HHHHHHH.HHHHHHTT-HHHHHHHHH CS
      ANAPC3   7 nAiflaerlla...aetespedayll.AlclylngqykrAyellr 47 
                 +A+ +ae++ a    ++    +a+ll ++++  +g+  rA    +
  KIR62675.1 762 DALAYAEKIAAnagDDAGTRASALLLaGQAHQTLGDQGRAVACWQ 806
                 699999999955555555555555555888888888888876655 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.7
                  HH--HHH......HHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3   19 etesped......ayllAlclylngqykrAyellrka 49  
                  e+++p++      + llA + + +g+  +A  ll + 
  KIR62675.1 1053 EPHNPQApaqvgpRVLLATARLAAGDPATAVGLLAPV 1089
                  5555555555666677888888888888888877765 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.047
                  HHHHHHHTT-HHHHHHHHHCT.SHHHC-H....HHHHHHHHHHHHTT-HHHHH CS
      ANAPC3   29 lAlclylngqykrAyellrka.klnsksl....gcrylfAqcllkLkkyeeAi 76  
                  +A +l+  gq ++A++++++a     ++      +  ++A++l + ++  eA+
  KIR62675.1 1110 YASALLAHGQLDQALDWAHRAvAVPAEDVrsqvIAVSVLAEALAACGRPAEAL 1162
                  899****************9977777776222223334556666666666666 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.3     0.074        88      13      32 ..     720     739 ..     719     740 .. 0.88
   2 ?   -1.7   0.0       2.6   3.1e+03      10      26 ..     753     769 ..     751     770 .. 0.86
   3 ?    8.0   0.1    0.0022       2.6       3      30 ..     784     811 ..     782     812 .. 0.88
   4 ?   -1.0   0.0       1.6   1.9e+03       3      22 ..     984    1003 ..     983    1005 .. 0.86
   5 ?    1.9   0.0      0.18   2.2e+02       9      28 ..    1112    1131 ..    1111    1133 .. 0.85
   6 ?   -1.4   0.0         2   2.4e+03       7      22 ..    1148    1163 ..    1146    1171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.074
                 HTT-HHHHHHHHHHHHHHST CS
       TPR_1  13 klgkydeAleyyekALelnP 32 
                 + g++  A+ey e+A el  
  KIR62675.1 720 QAGEPAAAVEYAERAAELAR 739
                 6799************9976 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.6
                 HHHHTT-HHHHHHHHHH CS
       TPR_1  10 ayfklgkydeAleyyek 26 
                 a+++ g++ +Al+y ek
  KIR62675.1 753 ALLQVGRPGDALAYAEK 769
                 78999********9887 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALel 30 
                 al   G+a++ lg+   A+++ ++AL++
  KIR62675.1 784 ALLLAGQAHQTLGDQGRAVACWQEALQV 811
                 666779********************96 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.6
                  HHHHHHHHHHHTT-HHHHHH CS
       TPR_1    3 alynlGnayfklgkydeAle 22  
                  al  +G++ + lg+++ A +
  KIR62675.1  984 ALVARGVVARGLGEPEHAAD 1003
                  66779***********9976 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.18
                  HHHHHTT-HHHHHHHHHHHH CS
       TPR_1    9 nayfklgkydeAleyyekAL 28  
                   a++  g++d+Al+   +A+
  KIR62675.1 1112 SALLAHGQLDQALDWAHRAV 1131
                  578899********999997 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 2
                  HHHHHHHTT-HHHHHH CS
       TPR_1    7 lGnayfklgkydeAle 22  
                  l+ a+   g++ eAl+
  KIR62675.1 1148 LAEALAACGRPAEALA 1163
                  7889999999999986 PP

>> HTH_ParB  HTH domain found in ParB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00034      0.41      16      39 ..     750     773 ..     748     774 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00034
    HTH_ParB  16 HARaLlslkdeelqlqlaekiiee 39 
                 HARaLl++  + + l+ aeki+++
  KIR62675.1 750 HARALLQVGRPGDALAYAEKIAAN 773
                 *********************976 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.044        52      13      33 ..     720     740 ..     710     740 .. 0.89
   2 ?    8.7   0.0    0.0018       2.2       1      30 [.     782     811 ..     782     813 .. 0.91
   3 ?   -2.9   0.0       9.5   1.1e+04       4      29 ..     985    1010 ..     984    1013 .. 0.77
   4 ?   -2.0   0.1         5   5.9e+03       7      31 ..    1148    1172 ..    1147    1174 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.044
                 HTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyyekaleldpd 33 
                 + g+  +A+ey e+a el++d
  KIR62675.1 720 QAGEPAAAVEYAERAAELARD 740
                 678999************985 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0018
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekalel 30 
                 a+a+++ g+++++lgd   A+++ ++al+ 
  KIR62675.1 782 ASALLLAGQAHQTLGDQGRAVACWQEALQV 811
                 679999*****************9999975 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 9.5
                  HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8    4 yynlgsiylklgdyeeAkeyyekale 29  
                  ++  g + + lg+ e A   +  a +
  KIR62675.1  985 LVARGVVARGLGEPEHAADLLADAMS 1010
                  56788899999*99999887777766 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 5
                  HHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8    7 lgsiylklgdyeeAkeyyekaleld 31  
                  l+ ++   g+  eA +  e+a++l+
  KIR62675.1 1148 LAEALAACGRPAEALARAEEAVRLA 1172
                  6888889999999999999998876 PP

>> ANAPC5  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.12   1.4e+02      42      71 ..     783     812 ..     769     815 .. 0.91
   2 ?    4.5   0.8      0.03        36      42      75 ..    1143    1176 ..    1101    1191 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.12
      ANAPC5  42 yalLnlaslhadfghneeAvkaleeairlA 71 
                 +alL     h+++g++  Av+  +ea ++A
  KIR62675.1 783 SALLLAGQAHQTLGDQGRAVACWQEALQVA 812
                 689999999******************998 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.03
      ANAPC5   42 yalLnlaslhadfghneeAvkaleeairlArenk 75  
                  +a+  la   a+ g ++eA+++ eea+rlA  ++
  KIR62675.1 1143 IAVSVLAEALAACGRPAEALARAEEAVRLAYATE 1176
                  344445555667799**************96654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.86u 0.26s 00:00:01.12 Elapsed: 00:00:00.48
# Mc/sec: 7404.74
//
Query:       KIR62676.1  [L=171]
Description: hypothetical protein TK50_16955 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.096   12.8   5.1       0.15   12.1   5.1    1.4  1  DUF4267   Domain of unknown function (DUF4267)


Domain annotation for each model (and alignments):
>> DUF4267  Domain of unknown function (DUF4267)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   5.1   8.4e-06      0.15       1      71 [.      16      93 ..      16     130 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.4e-06
     DUF4267  1 glaltalGllallrPeeaaasFGlppdssvkdsaaanalialkGvRdlalGlallvlslqgnrr..algvvl.....l 71
                g++++++G+l+ll Pe+++++ G+++++s +++    +++ ++++    +G+  l++ ++  r     +vv+     +
  KIR62676.1 16 GVLALLMGALGLLWPEAQLRMLGFEVPQSRAAGDYTGTFLTASAMASFNMGVYYLLATATEWRAfyRFTVVFrlvtfT 93
                78999**********************************************998887765544422333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1259.01
//
Query:       KIR62677.1  [L=540]
Description: protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-40  138.3   0.0    3.6e-40  138.0   0.0    1.0  1  Pkinase      Protein kinase domain
    1.4e-23   83.5   0.0    1.8e-23   83.2   0.0    1.1  1  Pkinase_Tyr  Protein tyrosine kinase
    0.00011   22.2   4.5     0.0051   16.8   0.4    2.6  3  APH          Phosphotransferase enzyme family
     0.0041   17.0   0.4     0.0041   17.0   0.4    2.7  3  SPDY         Domain of unknown function (DUF317)
  ------ inclusion threshold ------
      0.079   12.8   0.2       0.14   12.0   0.2    1.3  1  VirB8        VirB8 protein
       0.14   11.5   0.0       0.27   10.5   0.0    1.4  2  Kinase-like  Kinase-like
       0.16   12.1   0.0        0.3   11.3   0.0    1.4  1  ABC1         ABC1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0   0.0   1.4e-43   3.6e-40       8     257 ..      24     264 ..      17     267 .. 0.91

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 1.4e-43
                 EEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHH CS
     Pkinase   8 GeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee.kdelylvleyveggeladllerkgslseeeakkia 104
                  +G++++Vy+a++ + g++vAvK+ ++  ++++++ ++lrE +   +++ hp++v l++v  + +++ yl++e+++ g++a++++  + l ++e++++ 
  KIR62677.1  24 ARGGYATVYRATQISVGREVAVKVENRTLDNERDQARFLREARAAGRMSsHPHVVDLFDVGVTvDRHPYLIMELCD-GSYAERMR-TSPLGPAETRDLG 120
                 58**********************************************99**********7776999*********.56888886.589********** PP

                 HHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSH CS
     Pkinase 105 kqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekg 202
                  +i+ +l++ H++g++HrD+Kp+NiL ++ +   ++DFGla  +e + + +t +v t+ Y +PE+ ++++ s++vDv++l  +ly +++g+pp +++++
  KIR62677.1 121 VKIADALAHSHANGVLHRDVKPANILHSHFNPAVLADFGLAVLAEVRDPtVTLEVLTPAYAPPEMFNHSPPSPAVDVYALCATLYAVMFGRPPRWQSER 219
                 ****************************8888*********9998776669999*****************************************4444 PP

                 HHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHH CS
     Pkinase 203 kekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaee 257
                 +           +++ +l+  ++ +p    ++ee+ d+l+  ++ dp  R++a e
  KIR62677.1 220 SP----------SLVTVLEMFHQPIPGLPGVPEELVDVLRAGMSNDPGARPSAIE 264
                 33..........4555677778899**************************9976 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0     7e-27   1.8e-23       5     256 ..      21     266 ..      17     269 .. 0.86

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 7e-27
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS.-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkkl.khpnivkllgvct.keepllivteyvkgGdLlkfLrkkekek 99 
                  +  ++G +++V+++t      +   +VavK+ +++ ++e+ ++++l+ea+   ++ +hp++v l  v +  +++ ++++e+++ G+  + +r++   +
   KIR62677.1  21 EVFARGGYATVYRATQI----SVGREVAVKVENRTLDNERdQARFLREARAAGRMsSHPHVVDLFDVGVtVDRHPYLIMELCD-GSYAERMRTS---P 110
                  5678999*******999....8899******9888776654999***********9********87755456777******97.7788888887...9 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwE 197
                  l   ++ ++ +++A+++++ +++ ++Hrd+   N+L s+ + + ++DfGLa   e +d +   + + l   + +pE+++++  + + Dv++   +l+ 
   KIR62677.1 111 LGPAETRDLGVKIADALAHSHANGVLHRDVKPANILHSHFNPAVLADFGLAVLAEVRDPT--VTLEVLTPAYAPPEMFNHSPPSPAVDVYALCATLYA 206
                  9**************************************************999544444..456688999*************************** PP

                  HHTTSSGTTTTS.HHHHHHHHHHT.TEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 198 iftlgespypgl.kneevleklke.gkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                  ++  g+ p ++  ++ ++++ l+  ++ ++    +peel ++++  +++dp  Rp+  el+
   KIR62677.1 207 VMF-GRPPRWQSeRSPSLVTVLEMfHQPIPGLPGVPEELVDVLRAGMSNDPGARPSAIELR 266
                  998.999999993445555555431444677789*********************987765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.4     2e-06    0.0051       3     107 ..      21     132 ..      19     134 .. 0.78
   2 !    7.6   0.1    0.0012       3.1     165     199 ..     132     164 ..     129     182 .. 0.86
   3 ?   -3.0   0.0       2.2   5.5e+03     104     140 ..     441     477 ..     380     489 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2e-06
                 EEE--.SSCEEEEEEETT.-.-EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-..B--B-CT.TBS-EEETTEEEEEEE----EE-SS....HHHHHHHH CS
         APH   3 relsggasnrtylvttpa.g.ryvlrrnpparaaeeirrevallrlLakagv..pvPevla.gdtddeeigllfalieyvpgrsllr....klsaaqlp 92 
                 ++++ g +  +y+ t  + g ++++++ +        r+++++lr  ++ag   + P v++ +d + ++ +++++++e ++g  ++r    +l +a+++
  KIR62677.1  21 EVFARGGYATVYRATQISvGrEVAVKVENRT--LDNERDQARFLREARAAGRmsSHPHVVDlFDVGVTVDRHPYLIMELCDGSYAERmrtsPLGPAETR 117
                 5667777777888887666548889998888..55556667777777777777755666652337888888899**********999999********* PP

                 HHHHHHHHHHCCHHC CS
         APH  93 ellealgeflaalhq 107
                 +l+ +++++la+ h+
  KIR62677.1 118 DLGVKIADALAHSHA 132
                 ***********9886 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0012
                 -EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEE CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfedaglg 199
                 + ++lH+D +p N+l    ++ v  + Df++a+l+
  KIR62677.1 132 ANGVLHRDVKPANILHSHFNPAV--LADFGLAVLA 164
                 5689*************777888..99**999886 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.2
                 CHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCC CS
         APH 104 alhqvdpaalpladflaqdlellrqlesatarllase 140
                 +  ++d++ lp ++++ + ++ +  l++a  +  + e
  KIR62677.1 441 RGTRADAPRLPCDGRHTWEAYAEGELPAALVDAAHDE 477
                 5556666666666666666666666666644444444 PP

>> SPDY  Domain of unknown function (DUF317)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.4       3.8   9.7e+03      31      45 ..     375     389 ..     360     393 .. 0.62
   2 !   17.0   0.4   1.6e-06    0.0041      31      60 ..     453     483 ..     446     484 .. 0.91
   3 ?   -2.3   0.0       1.7   4.3e+03      21      33 ..     503     516 ..     493     518 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.8
        SPDY  31 adgpaWhatFtaatP 45 
                 a+  aW a   +atP
  KIR62677.1 375 ASAGAWVAGSAPATP 389
                 444455555555555 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.6e-06
        SPDY  31 adgpaWhatFtaatPaelvaaftaaL.adpa 60 
                 +++++W+a++ ++ Pa+lv a ++++ adp+
  KIR62677.1 453 DGRHTWEAYAEGELPAALVDAAHDEVaADPQ 483
                 5899**********************88875 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.7
        SPDY  21 aaWtiearp.aadg 33 
                  +W++e+ p aadg
  KIR62677.1 503 SGWRLEVLPpAADG 516
                 57***999976665 PP

>> VirB8  VirB8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   5.4e-05      0.14      10      58 ..     351     401 ..     347     408 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX.X.XXXXXX. CS
       VirB8  10 igsarvqarnwrlvafvslliavlavg.avvlllplktveP.yvvevdktt 58 
                 ++s r+++r+w+l ++++l++a+ a++ a v+ +   t++P  vv+v  tt
  KIR62677.1 351 VTSGRRWRRRWFLGGAGALALAASASAgAWVAGSAPATPTPtPVVTVGGTT 401
                 77889****************999999566665555777775677776664 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.1   5.3e+03      21      61 ..      24      64 ..      20      68 .. 0.75
   2 ?   10.5   0.0   0.00011      0.27     154     215 ..     124     188 ..     103     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.1
  Kinase-like 21 kkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlke 61
                  +g+   v++++    g ++avkv   + ++ + +   l+e
   KIR62677.1 24 ARGGYATVYRATQISVGREVAVKVENRTLDNERDQARFLRE 64
                 56677789999999999999999988777777766665555 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00011
  Kinase-like 154 irlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve...kgfaPpEllgs 215
                      a+ +a+g++h ++++ n+l  +  + +l +f+  v a  + +  + e    ++aPpE++++
   KIR62677.1 124 ADALAHSHANGVLHRDVKPANILHSHFNPAVLADFGLAVLAEVRDPTVTLEvltPAYAPPEMFNH 188
                  445577899**************************87666555555333333459*******986 PP

>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012       0.3      19      50 ..      23      55 ..      18      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
        ABC1 19 iAaASiaqVhrAklk.sgeeVavKvqrpgvkkr 50
                +A +  a+V+rA+    g+eVavKv    ++++
  KIR62677.1 23 FARGGYATVYRATQIsVGREVAVKVENRTLDNE 55
                6777789*****99945********99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.22s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3950.97
//
Query:       KIR62678.1  [L=604]
Description: transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-30  104.7   0.0    1.6e-22   80.4   0.0    2.3  2  Abhydrolase_1  alpha/beta hydrolase fold
    1.6e-21   76.4   0.1    4.9e-21   74.8   0.1    1.9  1  Abhydrolase_4  TAP-like protein


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   1.8e-26   1.6e-22       2     110 ..     106     261 ..     105     289 .. 0.83
   2 !   22.0   0.0   1.2e-08   0.00011     189     254 ..     460     523 ..     454     526 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 1.8e-26
                    EEEEE-STTTCGGG......GTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB......CHH................................ CS
  Abhydrolase_1   2 vlvilhGlpgssdv......waerglapaLakdgfdvillDlrGvgySspapacin.....ddy................................ 54 
                    +l +++G+pg+s+       ++   l+++L + +fd++++D+rGv+ S+   + ++     + y                                
     KIR62678.1 106 SLFVNPGGPGGSGTdlalaaPYF--LGDDLLD-RFDIVGVDPRGVAASENVRCFPSvkeqtKAYaglnvafpwtkaeeqayvasskaigkacsstg 198
                    7999******8777445533333..7777776.***************999986668888844466666667777788888999999999999999 PP

                    .......SHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESECSSC CS
  Abhydrolase_1  55 .......gtasvaddldrildalgddkltlvGhSmGGmialayaaeyperVkalvllgaidpa 110
                           +ta va+d++ ++ a gd+kl ++G+S+G++++ +ya ++p+rV+a+v +g ++p+
     KIR62678.1 199 kpltgamSTAEVARDMEVLRRAVGDKKLSYLGFSYGTALGQYYANMFPDRVRAVVVDGVLNPN 261
                    9999999***************************************************95444 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 1.2e-08
                    HHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHH CS
  Abhydrolase_1 189 ieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafl 254
                    +++w+++d++++ +++++    +ap+lv++   Dp++ ++  + +a+llp++rl+  +++gH+a+ 
     KIR62678.1 460 RNTWTVRDEDAYTGSFDK--RTSAPVLVVGNYWDPATNYQGAVTSAALLPNSRLLSSDNWGHTAYG 523
                    789**************9..8888***************************************985 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.1   5.4e-25   4.9e-21       2     103 .]     445     548 ..     444     548 .. 0.93

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 5.4e-25
  Abhydrolase_4   2 pvfgaalaesllsCa..gwpvspqrprdestakga.apvLllqnerDpaTPyegakklakalggavlvtvegeGHgalaagntCvdkavdaYLltG 94 
                    p+fg+ +a+++  Ca  +w+v+ +++   s +k + apvL+++n  DpaT y+ga + a  l++++l++ +++GH+a+ ++++C+  a++aYLl+G
     KIR62678.1 445 PYFGRLWAWATSPCArnTWTVRDEDAYTGSFDKRTsAPVLVVGNYWDPATNYQGAVTSAALLPNSRLLSSDNWGHTAY-GTSACATGAIEAYLLKG 539
                    89*********99*8446999999999998876655******************************************.79*************** PP

  Abhydrolase_4  95 elpaddtvC 103
                    +lpa+++vC
     KIR62678.1 540 TLPAKGKVC 548
                    ********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 3665.70
//
Query:       KIR62679.1  [L=313]
Description: glutamate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-37  129.2   0.0    1.9e-37  128.9   0.0    1.1  1  SBP_bac_3        Bacterial extracellular solute-binding prote
  ------ inclusion threshold ------
      0.014   15.6   0.0      0.064   13.5   0.0    1.9  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   0.0   2.1e-41   1.9e-37       1     214 [.      57     269 ..      57     274 .. 0.92

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 2.1e-41
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-....EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgv....kvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkd 95 
                 +r+gv+ +  P   +  +g+++Gfd+++a+ ia++lg+    ++e+vpvs +++ipal+ g vD++++++++t+eR++ v F  py++++q  +v++  
  KIR62679.1  57 IRIGVS-TVGPLMGELRDGTYAGFDIEIARYIAAQLGYagdhRIEWVPVSTEDRIPALQGGSVDLVVSTFSMTEERAKLVSFAGPYLVTTQEAMVPNR- 153
                 689995.7778888888***********************988*****************************************************53. PP

                 SHGTCCHSSCGCGTTS..EEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEE CS
                 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  96 askissiksladLkgk..kvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavr 192
                    + si++++dL +   kv+++ gst+e+ l +   +++++ +++   ++++ + +gr+dav  d+++la+++ ++p++  v++ +  +se+++++v+
  KIR62679.1 154 --LRDSIRTIEDLRDPryKVCTSGGSTTEAELGR---HQIRVFVVKEVGDCVEGILAGRYDAVSSDETILAGFLSRHPKDFTVVDMPFGTSEQIGVGVP 247
                 ..45677777799764358**********88888...7999*9*****************************************8888999******** PP

                 TTTHHHHHHHHHHHHHHHHTTH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 193 kgdseLrkainkalaelkadgt 214
                  +d++Lr+ +  +l++ ++ g+
  KIR62679.1 248 ISDPALRDLVAFFLDKSYQQGR 269
                 **************99998886 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.1e-06     0.064      74     110 ..     113     149 ..      67     153 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.1e-06
                      HHTTS-SEE-SS-B--HHHHTTSEEESESEEE-EEEE CS
  Lig_chan-Glu_bd  74 llekkadlavapltitaeReevvdFtkpfmelgisil 110
                      l  +++dl+v+ +++t+eR++ v F+ p++ +  + +
       KIR62679.1 113 LQGGSVDLVVSTFSMTEERAKLVSFAGPYLVTTQEAM 149
                      566799***********************98766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2043.67
//
Query:       KIR62680.1  [L=340]
Description: hypothetical protein TK50_16980 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2386.92
//
Query:       KIR62681.1  [L=214]
Description: Zn-dependent hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-10   40.3   5.9    5.4e-10   39.6   5.9    1.3  1  Lactamase_B    Metallo-beta-lactamase superfamily
    0.00016   21.2   0.1    0.00022   20.8   0.1    1.2  1  Lactamase_B_2  Beta-lactamase superfamily domain
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.017   15.0   0.0    1.3  1  Lactamase_B_3  Beta-lactamase superfamily domain
       0.03   14.5   0.2      0.069   13.3   0.2    1.6  1  TRAM_2         TRAM domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   5.9   1.2e-13   5.4e-10       2     197 .]      25     193 ..      24     193 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 1.2e-13
                  CCCSSEEEEEE..ETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHH.TTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCH CS
  Lactamase_B   2 gpdpvnsylie..gdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHi.Gglgglveatdvpvgavaeeapalfmeeaddaasrkgl 96 
                  gp+  n+yl++    g  +++D+  ++e+ ++        l + ++dav+ TH H+DH   gl+++v+at++ ++a a +    + +           
   KIR62681.1  25 GPGDNNCYLLRcrATGAQLMVDAANEPERLLE--------LCGGRLDAVVTTHDHWDHWeNGLPDVVSATGARTYAGAPDVDGITVPTD--------- 105
                  78899*******999***************97........68****************978****************************......... PP

                  HTTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETT...CCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHHHHHCHS CS
  Lactamase_B  97 llagvsadkpdvdeeeldgnaggrralyvtggpghghghgvveygg...gkvlftGDallagetgridltlrgaevrdpsdaekyldsllklaglkae 191
                             v+ e++d+++ g  +l+v+   gh++g++ + y++      lftGD l++g  g +  + ++++ ++++ ++k  d      +l+++
   KIR62681.1 106 -----------VPVEDGDVIRCGEISLEVIRLTGHTPGGVALLYDDpacHPHLFTGDSLFPGGVGNTFGKADDFASLFTDVKTKVFD------RLPDD 186
                  ...........*******************************9976444799**************999888888888888888886......55555 PP

                  E.EEESS CS
  Lactamase_B 192 v.lvpgH 197
                  + ++pgH
   KIR62681.1 187 TwVYPGH 193
                  5255587 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   4.8e-08   0.00022      29      62 ..      60      93 ..      39     129 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4.8e-08
                   .SEEEEE-SS--HHHH.GGGGCCCCC--EEEEEE.E CS
  Lactamase_B_2 29 ppidaVllthaHyDHl.aglltlrelrpkklply.a 62
                    ++daV+ th+H+DH  +gl+++   ++  ++ y +
     KIR62681.1 60 GRLDAVVTTHDHWDHWeNGLPDVVSATG--ARTYaG 93
                   589*************9*****999444..445534 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   3.7e-06     0.017       6      53 ..      28      78 ..      27     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.7e-06
  Lactamase_B_3  6 ghnsfllet.a.garilvDPfka.nlgyeppaeeaDlvlisqaledHahle 53
                   + n++ll+  a ga+++vD  ++ +  +e    + D+v+ +++++dH++  
     KIR62681.1 28 DNNCYLLRCrAtGAQLMVDAANEpERLLELCGGRLDAVVTTHDHWDHWENG 78
                   679***9995369******9988899999999***************9754 PP

>> TRAM_2  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   1.5e-05     0.069      19      49 ..      88     116 ..      80     128 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
                 EEETTS-TTTS--EEEES---T...T-EEEE CS
      TRAM_2  19 GRsyadAPEvDgevyvtgaeklskvGdfvkv 49 
                 +R+ya AP+vDg ++ t+   ++  Gd++++
  KIR62681.1  88 ARTYAGAPDVDGITVPTDVPVED--GDVIRC 116
                 7***********99998776555..887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       185  (0.0103185); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1677.33
//
Query:       KIR62682.1  [L=387]
Description: acyl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-28   99.7   6.0    2.5e-28   99.2   6.0    1.2  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    2.3e-26   92.7   0.2    2.3e-26   92.7   0.2    2.3  2  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    2.7e-18   65.9   0.0      5e-18   65.1   0.0    1.5  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
      1e-06   29.0   9.9    1.7e-06   28.3   9.9    1.4  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
  ------ inclusion threshold ------
      0.095   12.9   0.0        0.2   11.8   0.0    1.5  1  Vault          Major Vault Protein repeat domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   6.0     7e-32   2.5e-28       2     149 ..     230     380 ..     229     381 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 7e-32
                    BHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC.-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------..HHHHHHHHHH CS
  Acyl-CoA_dh_1   2 kGfrvametlnheRlavaaaalglarraleealeyarrrkafg.kplidhqlvreklaemaaeleaarllvyraaealdagkpd..raeasmaKlf 94 
                     G+ +   +ln eR++vaa+ +g+ r a+e+a ey  +rk  g + ++ hq v++ la+ a+++e arl++y+aa ++dag++   ++  +maK+ 
     KIR62682.1 230 AGLPALFAGLNPERITVAAMGVGTGRYAIERASEYTATRKVWGgRSIGTHQGVAHPLAHAAVQVELARLMIYKAATLYDAGRDLeaGVSGNMAKYA 325
                    588888899*********************************99**************************************998999999***** PP

                    HHHHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHHH CS
  Acyl-CoA_dh_1  95 aselaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarrl 149
                      e+a  ++d a+q lGgaG+++ey+v+ l+ +ar+ ri+  + e+ +n +a+++
     KIR62682.1 326 SGEAAALAVDTAVQALGGAGMTTEYGVATLLGAARAGRIAPVSREMILNFVAQHV 380
                    ****************************************999999999999987 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.2   6.5e-30   2.3e-26       1     112 [.       6     116 ..       6     117 .. 0.93
   2 ?   -0.5   0.3      0.53   1.9e+03      52      69 ..     339     354 ..     314     379 .. 0.61

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 6.5e-30
                    THHHHHHHHHHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHH CS
  Acyl-CoA_dh_N   1 teeqealrdtvrefaeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailrf 96 
                    t+eqe+lrd+vr++ ++    +  e  ++g +  elw+++a+lG+lg+++p+ ygG g++++e aiv+eela+a+++l lll v+ ++va ++ r+
     KIR62682.1   6 TDEQEQLRDAVRALGRKYGHGYFVEKAKAGGHTTELWEEAARLGYLGVNIPTGYGGGGGGITELAIVCEELAAAGCPL-LLLVVSPAIVATIVTRH 100
                    79***************998877777777766789******************************************7.46889999********* PP

                    S-HHHHHHHHHHHHTT CS
  Acyl-CoA_dh_N  97 GteeqkrryLpklasg 112
                    Gteeq++r+Lp +a+g
     KIR62682.1 101 GTEEQRQRFLPAMADG 116
                    **************98 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.53
                    GGGTS--S-HHHHHHHHH CS
  Acyl-CoA_dh_N  52 eeygGagldyleaaivae 69 
                    ++ gGag++ +e+  va 
     KIR62682.1 339 QALGGAGMT-TEYG-VAT 354
                    677888863.3333.333 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   1.4e-21     5e-18       2      80 ..     122     200 ..     121     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 1.4e-21
                    EE---SS-SS-GGG---EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEETS---.----EEEEEEE..GGGEEE----- CS
  Acyl-CoA_dh_M   2 falTEpqaGsdvasvkttaaerdggeyvlnGeKiwitnaaiatlalvlartekpd.rarglslflvprdapgvsvrriee 80 
                    fa+TEp+aGs+  ++ t +a+rdg+++ l+G+K++i+++ +a+++lv+arte+++ ++ +  lflvp+dapg++ ++++ 
     KIR62682.1 122 FAITEPEAGSNFHRLGT-VARRDGDDWLLTGRKCYISGVDEAQYVLVVARTEDAAtGKLKPALFLVPTDAPGLTRSKLDM 200
                    89***************.9*******************************766667788999************998865 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   9.9   4.9e-10   1.7e-06       2     114 ..     245     350 ..     244     361 .. 0.95

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 4.9e-10
                    HHHHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   2 giaavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaa 97 
                    ++aa+ +G  r a++ + e++++r+   +g+++  ++ + + la+aa +++ Ar+++++aa+      +ag+ +  e    + +a+ +  e a+ a
     KIR62682.1 245 TVAAMGVGTGRYAIERASEYTATRKV-WGGRSIGTHQGVAHPLAHAAVQVELARLMIYKAATL----YDAGRDL--EAGVSGNMAKYASGEAAALA 333
                    79**********************99.9***********************************....8889886..8999**************** PP

                    HHHHHHHCGGGGGBTT- CS
  Acyl-CoA_dh_2  98 vdalfeaaGgsalrkes 114
                    vd +++a Gg ++++e+
     KIR62682.1 334 VDTAVQALGGAGMTTEY 350
                    ************99876 PP

>> Vault  Major Vault Protein repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.7e-05       0.2      21      40 ..     137     156 ..     117     157 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.7e-05
       Vault  21 ngvkRkaGdrWlvrGPgeYi 40 
                  +v R+ Gd Wl+ G   Yi
  KIR62682.1 137 GTVARRDGDDWLLTGRKCYI 156
                 3499***********99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 2476.07
//
Query:       KIR62683.1  [L=674]
Description: acetyl-CoA carboxylase subunit alpha [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-65  218.5   0.0    1.2e-64  217.7   0.0    1.4  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    1.5e-40  138.1   0.0    3.3e-40  137.1   0.0    1.6  1  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    2.5e-30  104.8   0.0    1.2e-29  102.6   0.0    2.3  2  Biotin_carb_C    Biotin carboxylase C-terminal domain
    9.8e-16   57.4   0.2    5.4e-15   55.0   0.0    2.4  3  Biotin_lipoyl    Biotin-requiring enzyme
    2.8e-13   49.9   0.0    5.3e-13   49.0   0.0    1.4  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    8.1e-11   41.6   0.8      1e-06   28.5   0.0    2.8  2  Biotin_lipoyl_2  Biotin-lipoyl like
    7.7e-08   32.1   0.0    1.6e-07   31.1   0.0    1.4  1  ATP-grasp        ATP-grasp domain
    4.1e-06   27.4   1.2      0.082   13.6   0.5    2.6  2  HlyD_3           HlyD family secretion protein
    0.00062   19.0   0.2       0.66    9.2   0.0    2.4  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    0.00094   19.1   0.3       0.93    9.5   0.1    3.3  3  RnfC_N           RnfC Barrel sandwich hybrid domain
  ------ inclusion threshold ------
      0.054   13.1   0.0      0.091   12.3   0.0    1.3  1  ATP-grasp_4      ATP-grasp domain


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.7   0.0   7.5e-68   1.2e-64      37     209 ..     141     311 ..     115     313 .. 0.92

  Alignments for each domain:
  == domain 1  score: 217.7 bits;  conditional E-value: 7.5e-68
                  H-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEEEEETTS-EEEEEEEEECCECTCCCCEEEES-SS-- CS
  CPSase_L_D2  37 igyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDakgnvitvcerenslqlrtqkvievAPsqtLt 134
                    +Pv++ka++g+GG+Gmr++ + + lae+v++a++ea+aafg+++v+ve+++++ +++Ev+v  D++g+v+ ++er++s+q+r+qk++e+AP+ +L 
   KIR62683.1 141 TDFPVLVKASAGGGGRGMRIVADPAGLAEAVASARREAAAAFGDDTVFVERYVERGRHVEVQVFGDTHGTVVALGERDCSIQRRHQKIVEEAPA-VLP 237
                  579******************************************************************************************9.79* PP

                  HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HHHHHHHHHTT--GC CS
  CPSase_L_D2 135 deerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlvkeaakialgekLe 209
                  d  rq+l++aav+++r+vg+vgagtvefll p +++++++E+NtRl+ve++++e++TGldlv  ++ +a g +L+
   KIR62683.1 238 DGVRQRLHAAAVAAARAVGYVGAGTVEFLLAP-DGQFFFLEMNTRLQVEHPVTEAVTGLDLVRLQLLVAEGGPLP 311
                  *******************************9.**************************************9997 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.0     2e-43   3.3e-40       1     110 []       1     110 [.       1     110 [. 0.99

  Alignments for each domain:
  == domain 1  score: 137.1 bits;  conditional E-value: 2e-43
                    ---EEEE---HHHHHHHHHHHHHTT-EEEEEEEGGGTTSHHHHHSSEEEEEESSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTTT-HHHHHHHH CS
  Biotin_carb_N   1 kikkvlianrGeiAvriiravrelgietvavyseedanslhvreadeavelgpasasesYlniekivkaakesgadavhpGyGflsEnaefaeave 96 
                    +i+++l+anrGeiA r++ ++r lg+ tvav+s++da++++v ead av+l++++++e+Yl+++ i++aa+++gadavhpGyGfl+Enaefa+av+
     KIR62683.1   1 MITRLLVANRGEIARRVLATCRALGVATVAVHSDADADAPFVAEADLAVRLPGNAPAETYLRVDLILDAARRTGADAVHPGYGFLAENAEFAAAVT 96 
                    799********************************************************************************************* PP

                    HTT-EESSS-HHHH CS
  Biotin_carb_N  97 eagivfiGPsaeal 110
                    +ag++++GP+a+a+
     KIR62683.1  97 DAGLTWVGPPAKAI 110
                    **********9986 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.0   7.4e-33   1.2e-29       1     108 []     324     438 ..     324     438 .. 0.98
   2 ?   -3.7   0.0       7.7   1.3e+04      13      30 ..     602     619 ..     594     621 .. 0.75

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 7.4e-33
                    EEEEESEETTTTTEE--CE-SEEE--.......-STTEEEEE---TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEESS-BSHHHHHH CS
  Biotin_carb_C   1 eaRinaEdpeknflpssGkvtelelp.......egpgvRvdsgveegsevspyyDsllaKlivhgetreealarlrraLaelrieGvktnieflra 89 
                    e+R++aEdp+++ +p++G ++++++p         +g+R+dsgv+ gs+v  +yDs+laKl+++++tr+ea + l+ aLa+ +++Gv+tn ++l +
     KIR62683.1 324 EVRLCAEDPARDHRPATGVLHRFAVPqvagefaPTKGLRLDSGVADGSTVGVHYDSMLAKLVAWAPTRAEATRLLAGALARAELHGVTTNRDLLVR 419
                    89************************9999999999************************************************************ PP

                    HHH-HHHHHT---TTTCCC CS
  Biotin_carb_C  90 iledeefakgeldtkflee 108
                    +l++++f ++e+dt+fl++
     KIR62683.1 420 VLRSPAFGAAEVDTGFLDR 438
                    *****************85 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.7
                    TEE--CE-SEEE---STT CS
  Biotin_carb_C  13 flpssGkvtelelpegpg 30 
                    ++p +G vt++++  g+ 
     KIR62683.1 602 LAPLPGAVTRVHVEVGQR 619
                    579999999999886665 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.2   6.8e+03      19      33 ..     109     123 ..     102     125 .. 0.72
   2 ?   -3.6   0.0       6.3     1e+04      16      28 ..     188     200 ..     180     202 .. 0.73
   3 !   55.0   0.0   3.3e-18   5.4e-15       8      72 ..     606     665 ..     600     666 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.2
                    ESSSTTCEE-TTSEE CS
  Biotin_lipoyl  19 vlvkvGdkVkagqvl 33 
                     + + GdkV+a   l
     KIR62683.1 109 AIAAMGDKVAAKALL 123
                    566779999887665 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.3
                    ECSESSSTTCEE- CS
  Biotin_lipoyl  16 vvevlvkvGdkVk 28 
                    +ve +v+ G +V+
     KIR62683.1 188 FVERYVERGRHVE 200
                    6788999999997 PP

  == domain 3  score: 55.0 bits;  conditional E-value: 3.3e-18
                    SEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl   8 iGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 72 
                    +G ++     +v+v+vG+ V+ag+ l+++eamK+e+++ ap++Gvv+e+ v+ G +v++g +la+
     KIR62683.1 606 PGAVT-----RVHVEVGQRVAAGDLLLTLEAMKLEHPVLAPADGVVAELPVPAGGQVDTGAVLAV 665
                    55555.....5****************************************************97 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   3.3e-16   5.3e-13      34     174 ..     140     280 ..     123     281 .. 0.89

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 3.3e-16
                      HC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT......-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHHHHC.T CS
  Dala_Dala_lig_C  34 elgypvfVKpareGSSvGvskveseeelkeaieeafky......dekvlvEeai.egreievavlgneklevsevgeivvkkgfydyeakysdd 120
                         +pv+VK++  G   G+  v   + l+ea+++a +       d +v+vE+++ +gr +ev v g+ + +v  +ge+  +     ++ ++  +
       KIR62683.1 140 ITDFPVLVKASAGGGGRGMRIVADPAGLAEAVASARREaaaafgDDTVFVERYVeRGRHVEVQVFGDTHGTVVALGERDCS-----IQRRH--Q 226
                      5679****************************98776434444599********99***********99*******99775.....34444..4 PP

                      T-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEES CS
  Dala_Dala_lig_C 121 kaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNt 174
                      k+  e pa l++ v+++++++a+ a +a++  G + v f+l  +g++++ E+Nt
       KIR62683.1 227 KIVEEAPAVLPDGVRQRLHAAAVAAARAVGYVGAGTVEFLLAPDGQFFFLEMNT 280
                      566789***********************************************9 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   6.3e-10     1e-06       7      39 ..     603     635 ..     600     638 .. 0.92
   2 !   10.7   0.2   0.00022      0.35       6      36 ..     639     669 ..     635     671 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 6.3e-10
  Biotin_lipoyl_2   7 apvsGrVaqlnVkdGqrVkaGdvLaelDsralq 39 
                      ap++G V++++V+ GqrV aGd+L++l+  +l+
       KIR62683.1 603 APLPGAVTRVHVEVGQRVAAGDLLLTLEAMKLE 635
                      899************************988876 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00022
  Biotin_lipoyl_2   6 aapvsGrVaqlnVkdGqrVkaGdvLaelDsr 36 
                       ap +G+Va+l V  G +V +G vLa+  ++
       KIR62683.1 639 LAPADGVVAELPVPAGGQVDTGAVLAVVTTP 669
                      5899**********************98765 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   9.8e-11   1.6e-07      27     159 ..     141     281 ..     129     283 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 9.8e-11
                 H-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEEETTC-EEE-.-EEEEEEETTEEEEEEECEE-SC CS
   ATP-grasp  27 lglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvrsaeGetafy.pvvetvqedgilrlsvapaevse 116
                  ++pv+vK +  g  G+G  +v +++ l +a++ +        ++ +v vE +v+  + + v v  +++G+++++ +    +q++    +  apa +++
  KIR62683.1 141 TDFPVLVK-ASAGGGGRGMRIVADPAGLAEAVASArreaaaafGDDTVFVERYVERGRHVEVQVFGDTHGTVVALgERDCSIQRRHQKIVEEAPAVLPD 238
                 589*****.677789***************999999999999999*************************9777625566899999999999******* PP

                 HHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS CS
   ATP-grasp 117 kaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapR 159
                    ++ ++ a  +++++g+vG  +vE+ +  dg+ ++ E+  R
  KIR62683.1 239 GVRQRLHAAAVAAARAVGYVGAGTVEFLLAPDGQFFFLEMNTR 281
                 **********************************999998777 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00018       0.3       2      30 ..     601     629 ..     600     633 .. 0.92
   2 !   13.6   0.5     5e-05     0.082       2      34 ..     638     670 ..     637     673 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00018
      HlyD_3   2 lrApvdGvvvelnveegevvqagdellei 30 
                 l Ap  G v+ ++ve+g+ v+agd ll++
  KIR62683.1 601 LLAPLPGAVTRVHVEVGQRVAAGDLLLTL 629
                 68*************************97 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 5e-05
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippd 34 
                 + Ap dGvv+el+v +g  v  g++l+ ++ p+
  KIR62683.1 638 VLAPADGVVAELPVPAGGQVDTGAVLAVVTTPE 670
                 78************99999*********99875 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0004      0.66      25      55 ..     604     633 ..     597     636 .. 0.73
   2 !    8.2   0.0   0.00077       1.3     108     140 ..     635     667 ..     630     671 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0004
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  25 rveGwveklyvnatgdkVkkGqpLaelyspe 55 
                  + G v++++v+ +g++V++G+ L++l++ +
  KIR62683.1 604 PLPGAVTRVHVE-VGQRVAAGDLLLTLEAMK 633
                 456778888888.888888888888877665 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00077
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 108 tvtvkapisGvVteknvreGqyvqpgdtlftia 140
                 + +v ap++GvV e+ v  G  v++g +l+ ++
  KIR62683.1 635 EHPVLAPADGVVAELPVPAGGQVDTGAVLAVVT 667
                 56899**********************999875 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.067   1.1e+02      38      62 ..     103     127 ..     100     132 .. 0.88
   2 ?    2.6   0.0     0.082   1.3e+02      59      95 ..     194     229 ..     174     233 .. 0.77
   3 !    9.5   0.1   0.00057      0.93      39      80 ..     607     649 ..     596     669 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.067
      RnfC_N  38 iGapakplvkvgdkVlkGqkiaeae 62 
                 +G pak++ + gdkV    ++a+a+
  KIR62683.1 103 VGPPAKAIAAMGDKVAAKALLADAG 127
                 799*************999999875 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.082
      RnfC_N  59 aeaegfvsapvhasvsGtVkaiekrlvahgsgveavv 95 
                  + +  v ++v+  + GtV+a+ +r  + +++ + +v
  KIR62683.1 194 ERGR-HVEVQVFGDTHGTVVALGERDCSIQRRHQKIV 229
                 4444.4599****************999988887776 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00057
      RnfC_N  39 GapakplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkai 80 
                 Ga +++ v+vg++V  G+++ + e+  +  pv a+  G V ++
  KIR62683.1 607 GAVTRVHVEVGQRVAAGDLLLTLEAmKLEHPVLAPADGVVAEL 649
                 7889999************9988876679**********9875 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.6e-05     0.091       2      84 ..     142     217 ..     141     285 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.6e-05
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyie.GeEfavdayfdeeGepvilnil 84 
                  ++Pv +K s g + +G++++ +++ + +ava+ ++e+   ++     +  ++++ vE y+e G  + v ++ d++G+ v l   
   KIR62683.1 142 DFPVLVKASAGGGGRGMRIVADPAGLAEAVASARREA---AA-----AFGDDTVFVERYVErGRHVEVQVFGDTHGTVVALGER 217
                  69*******************************9883...33.....34566779*****77**************98766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4794.83
//
Query:       KIR62684.1  [L=533]
Description: acetyl-CoA carboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.2e-131  438.0   0.0   5.1e-131  437.7   0.0    1.0  1  Carboxyl_trans  Carboxyl transferase domain
  ------ inclusion threshold ------
       0.12   11.6   0.0       0.21   10.8   0.0    1.3  1  ECH_1           Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.7   0.0  5.7e-135  5.1e-131       2     484 ..      48     522 ..      47     528 .. 0.94

  Alignments for each domain:
  == domain 1  score: 437.7 bits;  conditional E-value: 5.7e-135
                     SCTTCEEEEEEEEHTTSGGGE.BEHHHHHHHHHHHHHHHHHT..EEEEEEEESBETTEEHHHHTTEEEEESSTTSGGGCEEECHHHHHHHHHTEE CS
  Carboxyl_trans   2 ehprGkltareridllldpgs.FgeledlffhrvtelgrkkklprdgvvtgsGaviGravevvaqdktvlggslgpakgekllkaqeeaikagep 95 
                     +h+rGkl+ reri+llldp+s F+el+  +++  t++      ++ +vvtg+G v+G+++ vva+d tv gg+++p+   k  +a e+a+++++p
      KIR62684.1  48 HHQRGKLLPRERIELLLDPDSpFLELSPVAAY-GTDFP-----VGASVVTGIGVVEGVECLVVANDPTVRGGAVNPWSLAKTRRAGEIALANRLP 136
                     8***************************9999.88888.....89************************************************** PP

                     EEEEEEE-ESSS.GHHSSHHHHHHHHHHHHHHHHHHH.CS-EEEEESSEEETHHHHHHHHTSEEEEETTEEEEESSTHHHHHHHHSSCC-SSCHH CS
  Carboxyl_trans  96 ligindsgGaeg.riqegveslrgsGkifgenskasg.eIpqislvtgrcaGggaYlpalgdrvimveetskifltGpdvikkvlgreevtseel 188
                     ++ +++s+Ga++ +++e++      G++f++ +++s  +Ip++s+v+g++++ggaY+p ++d+vim++++s+++l+Gp+++ +++g e+ ++e+l
      KIR62684.1 137 MVNLVESAGADLpTQAEIFIPG---GRVFRDLTRLSAeGIPTVSVVFGNATAGGAYVPGMSDHVIMIRDRSQVYLAGPPLVRMATG-EVTDDESL 227
                     **********666777777776...************9************************************************.******** PP

                     HHSHHHHTTTTSSSEEESSHHHHHHHHHHHHTTS-SSTTSGGSS----ECSSGSSSH.....HCS-CTTTS---HHHHHHCEECTTC-EEESTTS CS
  Carboxyl_trans 189 gGatqhmtksGvahltaeddeealelirkllsylPkkasnnresaPivetadepdrd...lieivPdnakkpyDvreviarlvdegeFlEikegy 280
                     gGa +h+t+sG+a+++a+d+ ++++l r+++  l+  ++    ++P+ +   +p++d   l  +v ++ k p+D+rev+ar+ d +eF+E+k+ y
      KIR62684.1 228 GGAAMHATRSGLADFLASDERDGIRLARQCVRRLNRRKQG---PPPRTAFPAPPKHDpeeLLGVVSADLKVPFDPREVLARVLDGSEFDEFKPAY 319
                     ***********************************44444...4444333333444455668********************************* PP

                     STTEEEEEEEETTEEEEEEEE--SEEETTEE-HHHHHHHHHHHHHHHHTT--EEEEE-BSEE--SHHHHHTTHHHHHHHHHHHHHT--S-EEEEE CS
  Carboxyl_trans 281 AktvVvGfArlgGipvGvvAnetrveaGqvlfidsavKaarfirlcdaenlPlviladvrGflvGqrqeyggilkhGaklvdalaeakvPkitvi 375
                     ++ +V+G++ l+G+pvGv+An +    G vlf+++a+Kaa+fi+l +a + Plv+l++++G++vG++ e+ gi+khGa +++a++++kvP++tv 
      KIR62684.1 320 GTALVTGWGELHGYPVGVLANAR----G-VLFSEEAQKAAQFIQLANAADTPLVFLQNTTGYMVGTEYEQRGIIKHGALMINAVSNSKVPHLTVN 409
                     **********************8....9.****************************************************************** PP

                     -TEEEHHHHHTTTGGGSTTTTEEETTT-EEESS-HHHHHHHHSHHHHHHHHHHH.....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSH CS
  Carboxyl_trans 376 lrkayGGayvvmdskingadlvaawptariaVlgpegaveilfrkekaaaemer.....kdlaaerkkklkeyeeellnpyvaaargfaDavidp 465
                     l+++yG+++++m+++++++++++ wp+a+ aV+gp++++++l   +++aa++++      ++aa+r+  ++++e++ +     + r ++D vidp
      KIR62684.1 410 LGASYGAGNYGMCGRAYEPRFLFTWPNAKSAVMGPAQLAGVLSIVARQAAAARGqefdeDSDAAMRMMVEQQIESQ-SGALFLSGRLYDDGVIDP 503
                     ***************************************************9999999766777799999999999.99999************* PP

                     HHHHHTTSSSEEEHGGGHH CS
  Carboxyl_trans 466 setraklvialelewkkar 484
                     ++tr++l  +l++ ++ ++
      KIR62684.1 504 RDTRTVLGLCLSAIHSGPV 522
                     ***********99887765 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.4e-05      0.21      74     116 ..     158     200 ..     141     213 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.4e-05
                 HCCHHHHHHHHHHSSSEEEEEE-SEEETHHHHHHHHSSEEEEE CS
       ECH_1  74 keevlelwtklytvpkpviaavnGaaigGGlelalacDiviaa 116
                    v+  +t+l+   +p+++ v G a +GG+ +  + D vi+ 
  KIR62684.1 158 GGRVFRDLTRLSAEGIPTVSVVFGNATAGGAYVPGMSDHVIMI 200
                 55678889999999************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 3364.10
//
Query:       KIR62685.1  [L=569]
Description: exopolyphosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.8e-122  406.2   0.0   1.3e-121  405.6   0.0    1.2  1  AtuA      Acyclic terpene utilisation family protein AtuA


Domain annotation for each model (and alignments):
>> AtuA  Acyclic terpene utilisation family protein AtuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.6   0.0  7.4e-126  1.3e-121       1     337 [.       7     326 ..       7     337 .. 0.97

  Alignments for each domain:
  == domain 1  score: 405.6 bits;  conditional E-value: 7.4e-126
        AtuA   1 ignasGfagDrveaalelaekgeldvlvgdylaEltialaakrkkkdpekgyeptllealekllpelaekgikvvtnaGalnpkalaekvaelakelgl 99 
                 +gnasGf+gDr++a +e+++ geldvl+gdylaElt+ +  +++ +dp+ gy++t+l++le +l ++ e+g+++vtnaG+lnp++la ++ +la++lgl
  KIR62685.1   7 VGNASGFYGDRATAWREMLDGGELDVLTGDYLAELTMLILGRDRLRDPALGYAKTFLRQLEGCLGTALERGVRIVTNAGGLNPAGLAAAIGSLADRLGL 105
                 79************************************************************************************************* PP

        AtuA 100 kkelkvavveGDdvlekveelleegelleegeelvsanaYlGaegIveALeagAdiVitGRvaDaslvlapaawefgWkeddydelAgalvaGhllECg 198
                   + ++ +veGD + ++               + ++anaYlGa gI+++L+agAd+V+tGRv+Dasl ++pa+  +gW +dd+d+lAga+vaGhl+ECg
  KIR62685.1 106 --TARIGYVEGDAL-PRP--------------DALTANAYLGAFGIAACLDAGADVVVTGRVTDASLAVGPAIARYGWGRDDLDALAGATVAGHLIECG 187
                 ..49*********9.222..............3589*************************************************************** PP

        AtuA 199 aqvtGGnfagfkeved.lanlgfPiaeisadGevvitkeegtgGlvtvdtvkeqllYEiqgpalYlnpDvvadlseveleqvgedrVrvsgvkgepppp 296
                 aqvtGGnf++f+e++d  ++ gfPi+ei+ dG+ v+tk++gtgG+vtv+tv++qllYE++gp  Yl pDvv +l++vel++ g+drVrv gv+g+pppp
  KIR62685.1 188 AQVTGGNFSFFTELPDgGHRPGFPIVEIHPDGSSVVTKHPGTGGAVTVETVTAQLLYEVGGP-DYLGPDVVTRLDTVELTADGPDRVRVAGVRGTPPPP 285
                 ****************999*******************************************.************************************ PP

        AtuA 297 tlkvavtykggyqaeaelslaGldaeekaelaeeqvrerle 337
                 tlkv+v+  gg++++++++l+Gld+ +ka+l++ q++++++
  KIR62685.1 286 TLKVGVNSLGGFRNSMTFVLCGLDIPAKAALVRGQLEAAVG 326
                 ***********************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3947.71
//
Query:       KIR62686.1  [L=201]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-11   41.9   0.0    1.4e-10   40.8   0.0    1.6  1  TetR_N    Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
       0.11   12.9   6.0       0.07   13.5   4.4    1.6  1  DUF4510   Domain of unknown function (DUF4510)


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   1.5e-14   1.4e-10       1      46 [.      21      66 ..      21      67 .. 0.97

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 1.5e-14
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLlea 46
                +l+a++e++ e+G+++tt+  +A rAGvs+ga  +++p+K++L+ a
  KIR62686.1 21 LLEATVECLVEHGWSGTTTTVVATRAGVSRGAQLHHYPTKAALVTA 66
                79*****************************************988 PP

>> DUF4510  Domain of unknown function (DUF4510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   4.4   7.8e-06      0.07      48     151 ..      43     150 ..       2     155 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.8e-06
     DUF4510  48 earvgglgqGpewsa..arralqeaVaqeLaaLqlsweqdeapakPhgphRlvraea..gaaegaglraaev.igaLrsrEavLeaaLerLqgqcrqEL 141
                 ++r+g  ++G++ +   ++ al +a   +La  +    + ea a P gp+Rl r  +  gaa +  l +a + +    + +a L+aaL  L +q+  E+
  KIR62686.1  43 ATRAGV-SRGAQLHHypTKAALVTAAVAHLAQRRADELRTEAEALPAGPQRLDRVIDllGAAFTGPLFVAALeLWVAARTDAELRAALVPLERQVGREM 140
                 445444.667765541144577777777888888889999************99987334454444655544155666779****************** PP

     DUF4510 142 arlagalpGl 151
                  rl  al G+
  KIR62686.1 141 HRLTVALLGV 150
                 ****999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1400.56
//
Query:       KIR62687.1  [L=62]
Description: hypothetical protein TK50_17025 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.9    8.6   6.1         36    4.5   1.1    3.3  3  GvpG      Gas vesicle protein G


Domain annotation for each model (and alignments):
>> GvpG  Gas vesicle protein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.3    0.0032        58       7      14 ..       4      11 ..       1      15 [. 0.85
   2 ?    3.1   0.1    0.0052        93       7      14 ..      13      20 ..      12      22 .. 0.89
   3 ?    4.5   1.1     0.002        36       6      16 ..      21      31 ..      18      49 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0032
        GvpG  7 aPvrgviW 14
                aP+rg++W
  KIR62687.1  4 APARGLMW 11
                8******* PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0052
        GvpG  7 aPvrgviW 14
                aP+rg++W
  KIR62687.1 13 APARGLMW 20
                8******* PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.002
        GvpG  6 laPvrgviWia 16
                 aP+rg++W a
  KIR62687.1 21 SAPARGLMWSA 31
                58*******76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       123  (0.00686039); expected 358.6 (0.02)
Passed bias filter:                       94  (0.0052429); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 509.10
//
Query:       KIR62688.1  [L=247]
Description: phosphoesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-23   82.7   0.0    4.8e-23   82.1   0.0    1.2  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
    2.8e-08   34.5   0.0      3e-07   31.2   0.0    1.9  1  Metallophos    Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
      0.015   14.6   0.1        1.7    7.9   0.0    2.2  2  Metallophos_3  Metallophosphoesterase, calcineurin superfamil


Domain annotation for each model (and alignments):
>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   8.1e-27   4.8e-23       2     160 ..       4     191 ..       4     192 .. 0.75

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 8.1e-27
  Metallophos_2   2 klaiiSDlHsnldaleavlealkevgvdaiihaGDl.eeeepevleellela....pvlaVrGNnD.............eev...veedvlreaae 76 
                    ++a++SD+H++l  leavl++ + +++d+i+++GD+  + +p  + +ll  a    +v+ V GN D             +ev   ++ +       
     KIR62688.1   4 RVAVLSDVHGALPPLEAVLAEPDVAAADLIVLTGDIaAGPQPVEVLDLL--AglgdRVRWVGGNADrelvearagrpavDEVsnwAAGQ------- 90 
                    689********************************96666664333333..34479**********98887777666653332222222....... PP

  Metallophos_2  77 lgtdl...........peeaelel.agekvlliHgdpl.........gvkdalaellkeaeegsdvvvcGHtHvpevekeggvlvvnPGsvgeprd 151
                        l           p++ +l + +  +vl++H +p          +   + ae++ +  ++++ vvcGHtH+p ++  + +lvvn+Gsvg+p  
     KIR62688.1  91 ----LrddqvarlaalPTAVTLPVaGLGEVLFCHATPRddeevvlvdSRLSRWAEVFADVPAEVRTVVCGHTHMPFARLVDRRLVVNAGSVGMPYG 182
                    ....1222233334448888888745566*******98******777555555555555555677*****************************88 PP

  Metallophos_2 152 gdpetyail 160
                    g  +++a+l
     KIR62688.1 183 GPGADWALL 191
                    877799986 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0     5e-11     3e-07       2     202 ..       4     159 ..       3     161 .. 0.55

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 5e-11
                  EEEEEESBTBTTCCTHHHHHHHHH..HHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHHTSEEEEEC-TTS.............CHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkll..ddllreekpdlvllaGDlvdrgdlekellellaalvkypipvylllGNHe.............gfeeellnk 84 
                  r++v++D+H     g l+ l+++l   d+     +dl++l+GD +  g+ + e+l+lla l++   +v ++ GN +                 e    
   KIR62688.1   4 RVAVLSDVH-----GALPPLEAVLaePDV---AAADLIVLTGD-IAAGPQPVEVLDLLAGLGD---RVRWVGGNADrelvearagrpavD---E---- 82 
                  89*******.....**********33222...466********.888889999**********...9*********65554444332110...1.... PP

                  HHHHHHH....HHHHEHH.HCEEETSEEEE....EETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCC....HHHHHHHHHHTTCSEEEEEESS CS
  Metallophos  85 ygylgif....sepwrsd.aevfnnlplas....lgsgslkvlllhGgspellvsldklgslnleleapepg....dewlkdlekrekadwvivlgHs 169
                             +++ r+d +  + +lp a+     g g  +vl++h+  p++                 +++    d  l++        w  v++ +
   KIR62688.1  83 ------VsnwaAGQLRDDqVARLAALPTAVtlpvAGLG--EVLFCHAT-PRD-----------------DEEvvlvDSRLSR--------WAEVFADV 146
                  ......12223222222233444444444422222244..67777775.222.................1111122222222........22233333 PP

                  ESSCSSSCSCCHHHHHHHHHHTTESEEEEESSS CS
  Metallophos 170 plyrgsgylfgdealedllkkygvdlvisGHtH 202
                  p +                    v  v++GHtH
   KIR62688.1 147 PAE--------------------VRTVVCGHTH 159
                  333....................5555666655 PP

>> Metallophos_3  Metallophosphoesterase, calcineurin superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00028       1.7       5      44 ..       2      41 ..       1      47 [. 0.89
   2 ?    4.6   0.0    0.0029        17     212     237 ..     151     177 ..     138     183 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00028
                   --EEEEEE--TT-GGGHHHHHHHHHHH--SEEEEES---- CS
  Metallophos_3  5 vrkvlaisdlkgevellerlveviedkdpDllvlvGdlvk 44
                    ++v  +sd++g    le ++   +   +Dl+vl+Gd++ 
     KIR62688.1  2 LERVAVLSDVHGALPPLEAVLAEPDVAAADLIVLTGDIAA 41
                   689999************999998888***********75 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0029
                    SEEEE-SS--EE.EEETTEEEEE--BG CS
  Metallophos_3 212 evvvvghavkeh.eelgktlvvnPGal 237
                    + vv+gh++     ++++ lvvn G++
     KIR62688.1 151 RTVVCGHTHMPFaRLVDRRLVVNAGSV 177
                    679*****9998899**********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1728.44
//
Query:       KIR62689.1  [L=225]
Description: Crp/Fnr family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-26   89.8   0.0    1.5e-25   89.1   0.0    1.4  1  cNMP_binding  Cyclic nucleotide-binding domain
    1.8e-18   66.2   1.7    3.4e-18   65.4   0.3    2.0  2  HTH_Crp_2     Crp-like helix-turn-helix domain
    4.3e-05   23.1   0.0    0.00013   21.6   0.0    1.9  1  Crp           Bacterial regulatory proteins, crp family
    7.9e-05   22.2   0.0    0.00024   20.7   0.0    1.8  1  GntR          Bacterial regulatory proteins, gntR family
    0.00016   21.1   0.0    0.00039   19.9   0.0    1.6  1  Sigma70_r4    Sigma-70, region 4
    0.00017   21.4   0.2    0.00064   19.6   0.2    2.1  1  MarR_2        MarR family
     0.0024   17.5   0.1     0.0073   16.0   0.0    1.9  2  Sigma70_r4_2  Sigma-70, region 4
     0.0024   17.4   0.3     0.0066   16.0   0.0    1.8  2  HTH_24        Winged helix-turn-helix DNA-binding
     0.0026   17.5   1.1      0.035   13.9   0.0    2.5  2  HTH_23        Homeodomain-like domain
     0.0044   16.9   0.0     0.0071   16.3   0.0    1.4  1  HTH_36        Helix-turn-helix domain
     0.0053   16.9   0.5       0.19   11.9   0.0    2.5  2  HTH_28        Helix-turn-helix domain
     0.0056   16.7   0.0      0.016   15.2   0.0    1.8  1  HTH_29        Winged helix-turn helix
  ------ inclusion threshold ------
      0.023   14.8   0.1       0.14   12.2   0.0    2.2  2  HTH_3         Helix-turn-helix
      0.038   13.9   0.0      0.083   12.8   0.0    1.5  1  DUF977        Bacterial protein of unknown function (DUF977)
      0.044   13.6   1.0       0.13   12.1   0.0    2.1  2  HTH_IclR      IclR helix-turn-helix domain
      0.071   13.2   0.0       0.38   10.9   0.0    2.2  2  HemN_C        HemN C-terminal domain
      0.079   13.3   3.7       0.28   11.5   0.1    2.7  2  HTH_31        Helix-turn-helix domain
       0.12   11.3   0.0       0.16   10.9   0.0    1.2  1  TraI_2        Putative helicase
       0.15   12.0   0.0       0.34   10.8   0.0    1.6  1  TrmB          Sugar-specific transcriptional regulator TrmB
       0.17   11.6   0.1         10    5.8   0.0    2.8  3  TetR          Bacterial transcriptional repressor


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0   1.6e-28   1.5e-25       3      85 ..      30     112 ..      28     116 .. 0.95

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 1.6e-28
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflel 85 
                   ++++gev+f +G+p+dslyi+lsG+++v r+++dg+++++av+gp d++Gel+l++ +prtat++A+td++l++l++++++  
    KIR62689.1  30 EVRKGEVVFNEGEPGDSLYILLSGKIKVGRRAADGRQNLIAVMGPSDMVGELSLFDPGPRTATATAVTDTRLVRLRKQALRPW 112
                   799***************************************************************************99865 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.3   1.2e+03       4      31 ..     120     142 ..     100     144 .. 0.69
   2 !   65.4   0.3   3.8e-21   3.4e-18       1      67 [.     148     221 ..     148     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.3
                 HHHHHHHHCTTTCEEEEEHHHHHHHHHT CS
   HTH_Crp_2   4 ArfLlrlaeraggeielpltqeelAsml 31 
                 A  Llr  +r     +l+ t++ lA+++
  KIR62689.1 120 AEQLLRVLAR-----RLRRTNDSLADLI 142
                 4455544222.....4777888888875 PP

  == domain 2  score: 65.4 bits;  conditional E-value: 3.8e-21
                 HHHHHHHHHHHCT....TTC..EEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ETEEEEES-HHHHHH CS
   HTH_Crp_2   1 qRlArfLlrlaer....agg..eielpltqeelAsmlGltretvsrilseLkreglis.rgrririldleaLra 67 
                 +R+A+ Ll++a r    +gg  +++ +ltqee+A+++G++retv+++l+++  +g+++  g+ i+ild+e+L++
  KIR62689.1 148 GRVAKNLLQMAGRfgtrDGGvlRVTHDLTQEEIAQLVGASRETVNKALADFASRGWLRlDGKSIIILDPERLAR 221
                 6*********666332134589999*********************************55644*********97 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.4e-07   0.00013       3      30 ..     175     202 ..     174     204 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.4e-07
                 --HHHHHHHHTS-HHHHHHHHHHHHHTT CS
         Crp   3 mSRqdIAdylGlTrETVSRlLtrLrekG 30 
                 ++ ++IA ++G++rETV+  L +++ +G
  KIR62689.1 175 LTQEEIAQLVGASRETVNKALADFASRG 202
                 7899*****************9999877 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.7e-07   0.00024      16      56 ..     167     206 ..     165     212 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.7e-07
                 TSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        GntR  16 gelrpGdkLPsereLaaefgVsrttvReALrrLeaeglver 56 
                 g+lr    L +++e+a+  g sr tv++AL   +++g++  
  KIR62689.1 167 GVLRVTHDL-TQEEIAQLVGASRETVNKALADFASRGWLRL 206
                 678888889.****************************975 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   4.3e-07   0.00039      15      38 ..     169     192 ..     168     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.3e-07
                 HHHTTT--HHHHHHHHTS-HHHHH CS
  Sigma70_r4  15 lrfgeglTleEIgerlgiSrerVr 38 
                 lr  ++lT+eEI++  g Sre+V 
  KIR62689.1 169 LRVTHDLTQEEIAQLVGASRETVN 192
                 8999*******************7 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.2   7.2e-07   0.00064      16      52 ..     163     205 ..     120     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 7.2e-07
                 CTTTS......EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2  16 rrpgr......dltvgelarrlglsksavsrilkrLvaaGLve 52 
                  r+g+      dlt+ e+a+  g s+ +v+++l+++ ++G+++
  KIR62689.1 163 TRDGGvlrvthDLTQEEIAQLVGASRETVNKALADFASRGWLR 205
                 344448999999*****************************97 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       5.4   4.9e+03      31      36 ..     118     123 ..     117     125 .. 0.85
   2 !   16.0   0.0   8.1e-06    0.0073      21      47 ..     169     195 ..     168     197 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5.4
                   HHHHHH CS
  Sigma70_r4_2  31 EIAell 36 
                   EIAe+l
    KIR62689.1 118 EIAEQL 123
                   9**998 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 8.1e-06
                   HHHTS---HHHHHHHHT--HHHHHHHH CS
  Sigma70_r4_2  21 lryleglsykEIAellgisegtVksrl 47 
                   lr  ++l+++EIA+l g s  tV+++l
    KIR62689.1 169 LRVTHDLTQEEIAQLVGASRETVNKAL 195
                   8999********************988 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       3.5   3.1e+03       8      24 ..     123     139 ..     118     142 .. 0.54
   2 !   16.0   0.0   7.4e-06    0.0066      18      47 ..     175     204 ..     169     205 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.5
      HTH_24   8 ILelLqknprisqreLA 24 
                 +L++L +  r ++  LA
  KIR62689.1 123 LLRVLARRLRRTNDSLA 139
                 45555554455555555 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 7.4e-06
      HTH_24  18 isqreLAerlglSpstvnrrlkrLeeeGlI 47 
                 ++q e+A+ +g S+ tvn+ l  + + G++
  KIR62689.1 175 LTQEEIAQLVGASRETVNKALADFASRGWL 204
                 8**********************9999997 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.4      0.29   2.6e+02       5      27 ..     103     123 ..      99     138 .. 0.73
   2 !   13.9   0.0   3.9e-05     0.035      18      45 ..     175     202 ..     168     208 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.29
      HTH_23   5 reRlrillllaeGlsvreIAreL 27 
                 r R ++l+  +   +++eIA++L
  KIR62689.1 103 RLRKQALRPWL--NNRPEIAEQL 123
                 56667777777..5999***998 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.9e-05
      HTH_23  18 lsvreIAreLgvsrrTvyrwlkryreeG 45 
                 l+++eIA++ g sr Tv + l  ++  G
  KIR62689.1 175 LTQEEIAQLVGASRETVNKALADFASRG 202
                 799******************9996555 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     8e-06    0.0071      27      55 .]     176     204 ..     151     204 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8e-06
      HTH_36  27 sqetlakrlglsknTvsraikeLeqlGyi 55 
                 +qe +a++ g s++Tv +a++  +  G++
  KIR62689.1 176 TQEEIAQLVGASRETVNKALADFASRGWL 204
                 699*************************8 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1      0.14   1.3e+02       2      32 ..     105     141 ..     104     142 .. 0.81
   2 !   11.9   0.0   0.00021      0.19      13      41 ..     174     203 ..     168     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.14
      HTH_28   2 RleiikllaaGh.svre.....aArelgisrrtvyrW 32 
                 R+++++++++ +  ++e     +Ar+l  + +++ ++
  KIR62689.1 105 RKQALRPWLNNRpEIAEqllrvLARRLRRTNDSLADL 141
                 89999***99888888888888888888887777665 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00021
      HTH_28  13 h.svreaArelgisrrtvyrWikryeegGi 41 
                 + ++ e+A+++g sr+tv + +  + + G+
  KIR62689.1 174 DlTQEEIAQLVGASRETVNKALADFASRGW 203
                 3499*******************9999997 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.8e-05     0.016      12      45 ..     175     207 ..     166     217 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.8e-05
      HTH_29  12 vstvsqiAkllglsrrtvyrwlkrfeegGlaall 45 
                 + t  +iA+l+g sr tv+++l +f   G+  l+
  KIR62689.1 175 L-TQEEIAQLVGASRETVNKALADFASRGWLRLD 207
                 4.789**********************9987765 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0         2   1.8e+03      22      49 ..     105     132 ..     100     134 .. 0.71
   2 ?   12.2   0.0   0.00016      0.14       5      28 ..     170     193 ..     169     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2
                 SHHHHHHHHTTSSCSBHHHHHHHHHHHT CS
       HTH_3  22 srstisriEnGernPsletlkklakaLg 49 
                  +++++ + n++ ++  + l  la+ L 
  KIR62689.1 105 RKQALRPWLNNRPEIAEQLLRVLARRLR 132
                 5677777888888888888888887765 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00016
                 HHHTTHHHHHHHHHHTSSHHHHHH CS
       HTH_3   5 RkqlglsqeeLAeklGvsrstisr 28 
                 R  ++l+qee+A+++G sr t+++
  KIR62689.1 170 RVTHDLTQEEIAQLVGASRETVNK 193
                 67789*****************98 PP

>> DUF977  Bacterial protein of unknown function (DUF977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.3e-05     0.083      19      67 ..     167     215 ..     159     224 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.3e-05
      DUF977  19 GlvkkneritisdleritGvgrtsvrkylvdvlerGdlirpGkyGvfrd 67 
                 G+++    +t +++ +++G+ r++v+k l d   rG l   Gk  +  d
  KIR62689.1 167 GVLRVTHDLTQEEIAQLVGASRETVNKALADFASRGWLRLDGKSIIILD 215
                 778888999*********************************9877655 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       1.4   1.3e+03       7      18 ..     122     133 ..     118     142 .. 0.69
   2 ?   12.1   0.0   0.00015      0.13      17      52 .]     173     208 ..     160     208 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.4
                 HHHCT-CTTBSS CS
    HTH_IclR   7 aiLdalaeapqe 18 
                 ++L+ la++ ++
  KIR62689.1 122 QLLRVLARRLRR 133
                 889999988666 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00015
                 SS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE... CS
    HTH_IclR  17 qeltlselArrtglpkStvhRlLqtLvelGyveqdg 52 
                  +lt  e+A+  g ++ tv   L+ +  +G+++ dg
  KIR62689.1 173 HDLTQEEIAQLVGASRETVNKALADFASRGWLRLDG 208
                 569999***************************996 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       0.9   8.1e+02      39      62 ..     151     173 ..     144     174 .. 0.80
   2 ?   10.9   0.0   0.00042      0.38      15      58 ..     169     211 ..     168     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.9
      HemN_C  39 aaaleklqeqGLLeldggrlrltp 62 
                 a++l ++   ++ + dgg lr+t+
  KIR62689.1 151 AKNLLQMAG-RFGTRDGGVLRVTH 173
                 566777777.59999*******96 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00042
      HemN_C  15 LRlreGldlaafeqrfgldleellaaaleklqeqGLLeldggrl 58 
                 LR +  l  ++++q+ g + +e++ +al+++  +G+L ldg+++
  KIR62689.1 169 LRVTHDLTQEEIAQLVGAS-RETVNKALADFASRGWLRLDGKSI 211
                 67777788899*******9.7777999*************9875 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.6      0.41   3.7e+02      30      61 ..     108     138 ..      90     142 .. 0.57
   2 ?   11.5   0.1   0.00032      0.28       9      33 ..     169     193 ..     167     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.41
      HTH_31  30 tlsrlEqGrrgrpspavlealaralgldpaer 61 
                  l+ + + r  +  ++ l+ lar l+ + + +
  KIR62689.1 108 ALRPWLNNRP-EIAEQLLRVLARRLRRTNDSL 138
                 4444455555.456666666666666555544 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00032
      HTH_31   9 lReraGLsqeevAerlgvsestlsr 33 
                 lR  + L+qee A+++g s+ t+++
  KIR62689.1 169 LRVTHDLTQEEIAQLVGASRETVNK 193
                 788999**************99987 PP

>> TraI_2  Putative helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00017      0.16     170     228 ..      95     154 ..      88     208 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
      TraI_2 170 alsllllnrvipkevlawLsenpeileaLlkalsg.qtekasvlaelVkqadkasvardl 228
                 a++   l r+ ++++  wL++ pei e+Ll +l+    + ++ la+l+       va++l
  KIR62689.1  95 AVTDTRLVRLRKQALRPWLNNRPEIAEQLLRVLARrLRRTNDSLADLIFTDVPGRVAKNL 154
                 56666778888999999*****************96667889999999777666677776 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00038      0.34      23      52 ..     175     204 ..     169     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00038
                 CHHCHHCCCTTSSCHCHHHHHHHHHHCTSE CS
        TrmB  23 atadeiaeelgvprskvYevLrsLedkGlV 52 
                 +t +eia+ +g +r +v+++L    ++G+ 
  KIR62689.1 175 LTQEEIAQLVGASRETVNKALADFASRGWL 204
                 799*************************96 PP

>> TetR  Bacterial transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.52   4.6e+02      76      96 ..       5      26 ..       3      29 .. 0.88
   2 ?    1.1   0.0      0.32   2.8e+02      48      76 ..     113     141 ..     109     146 .. 0.87
   3 ?    5.8   0.0     0.011        10      38      86 ..     160     208 ..     154     214 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.52
                HHHTTSB-.--GHHHHHHHHHH CS
        TetR 76 lveagllq.addeeleaLadni 96
                l+++g++q +d+e+ eaLa+ +
  KIR62689.1  5 LARSGIFQgVDPEAAEALAKEM 26
                7899***************987 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.32
                 HHC-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        TetR  48 lsrnpeLakryrqlleelqaqlrellqel 76 
                 l++ pe+a+++ ++l+++ +++++ l+ l
  KIR62689.1 113 LNNRPEIAEQLLRVLARRLRRTNDSLADL 141
                 67899*************99999888777 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.011
                 HHHHHSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB---G CS
        TetR  38 RFlyrDlaellsrnpeLakryrqlleelqaqlrellqelveagllqadd 86 
                 RF  rD   l   ++  ++++ ql+ + ++++++ l+ +++ g+l++d 
  KIR62689.1 160 RFGTRDGGVLRVTHDLTQEEIAQLVGASRETVNKALADFASRGWLRLDG 208
                 778899999999999999***************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1563.93
//
Query:       KIR62690.1  [L=232]
Description: adenosylcobinamide amidohydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-48  166.0   2.8    1.2e-48  165.8   2.8    1.0  1  CbiZ      Adenosylcobinamide amidohydrolase
  ------ inclusion threshold ------
      0.094   13.1   0.7      0.094   13.1   0.7    1.6  2  FAM25     FAM25 family


Domain annotation for each model (and alignments):
>> CbiZ  Adenosylcobinamide amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.8   2.8   1.4e-52   1.2e-48       2     192 .]      24     215 ..      23     215 .. 0.97

  Alignments for each domain:
  == domain 1  score: 165.8 bits;  conditional E-value: 1.4e-52
        CbiZ   2 feeprrvlssavlngGlrelravlnhqvpegyeredpeeyleeyleelglppektvgllTaadmenaaiaeeefedlevtavvTaGvesnavragd... 97 
                  ++p  ++ssa+l+gG++  ++v+n++vp++y+r+dp+++l+e +e+lgl  + +vgllT++d+ +++ + ++     v +++T+G+ +++v+a++   
  KIR62690.1  24 ADRPLLTVSSAPLGGGIGVRHWVVNATVPMSYHRDDPADHLAELAEQLGL-DGPGVGLLTGVDVAEVVARVDS----AVRVWATVGL-GTPVQAAApdp 116
                 5789999*******************************************.5*********************....9*********.*********** PP

        CbiZ  98 ...........edeeaekpGTINiivlinaaLtdaalvralitatEAKtaalqdlgvrsrysegatGTgTDaiavaadkegeeeltyaGkhtklGelia 185
                               +a+++GT+Ni+v ++a+L daalv+a++tatEAK++a+++lg+       atGT TDa++v+++++ge+  +y+G+++ +G+ +a
  KIR62690.1 117 avatpapaparCAASAHRVGTVNIVVEVPARLGDAALVNAVATATEAKAQAIRELGLA------ATGTPTDAVTVLCPADGEP-SAYGGPRSAWGAPLA 208
                 **********956799*****************************************9......******************7.*************** PP

        CbiZ 186 raVyeAv 192
                 raV++Av
  KIR62690.1 209 RAVHAAV 215
                 ******8 PP

>> FAM25  FAM25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.5   1.3e+04      40      49 ..      87      96 ..      85     105 .. 0.60
   2 ?   13.1   0.7     1e-05     0.094       8      55 ..     137     184 ..     131     189 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.5
       FAM25 40 Kevtekvtnt 49
                 ev ++v ++
  KIR62690.1 87 AEVVARVDSA 96
                3455555444 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1e-05
       FAM25   8 vvkevveHaKeaGEKAiadalKkAqesgekvvKevtekvtntvtnavt 55 
                  v+ vve     G+ A+ +a+  A e+  ++++e     t t t+avt
  KIR62690.1 137 TVNIVVEVPARLGDAALVNAVATATEAKAQAIRELGLAATGTPTDAVT 184
                 577789999999**********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1732.84
//
Query:       KIR62691.1  [L=262]
Description: endonuclease III [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-23   82.0   0.0      6e-23   81.4   0.0    1.3  1  HhH-GPD        HhH-GPD superfamily base excision DNA repair p
    2.3e-07   30.3   0.4    6.2e-07   29.0   0.0    1.9  2  HHH            Helix-hairpin-helix motif
     0.0043   17.4   4.9     0.0083   16.4   4.9    1.5  1  EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
  ------ inclusion threshold ------
       0.19   12.4   0.0        1.2    9.7   0.0    2.3  2  HHH_5          Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   1.3e-26     6e-23       1     102 [.      47     176 ..      47     182 .. 0.94

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 1.3e-26
                 HHHHHHTTS-HHHHHHHHHHHHHHHSHCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................. RF
     HhH-GPD   1 vsailsqqtsderanriierlferfgfptpedladadeekLrelirelGfyrrKakyikelArilv................................. 66 
                 v++ils+q++d+ +n+++++lf r   pt+ d a+ad ++L+elir++Gfyr+K + ++ l ++lv                                 
  KIR62691.1  47 VATILSAQCTDKKVNEVTPKLFTR--YPTAADYAGADRAELEELIRPTGFYRNKTNSLIRLGQALVerydgqvpgklddlvtlpgmgrktanvilgnaf 143
                 789*********************..59********************************************************************966 PP

                 S-SSS--TTSHHHHHHHHHHTTSSSSTTHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 gkpdvlivvDvhvrrilkrlrsikekktkkkvekkl 102
                 g   ++i vD+h++r+++r+r++ e+ ++ k+e+++
  KIR62691.1 144 G--VPGITVDTHFQRLVHRWRLTAET-DPVKIEHAI 176
                 5..488*****************996.998888876 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       2.1   9.3e+03       8      16 ..      80      88 ..      80      88 .. 0.78
   2 !   29.0   0.0   1.4e-10   6.2e-07       1      28 [.     112     139 ..     112     140 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.1
                SSHHHHHTS CS
         HHH  8 asreeLlal 16
                a+r+eL++l
  KIR62691.1 80 ADRAELEEL 88
                789999876 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 1.4e-10
                 SHHHHHTSSHHHHHTSTT-SHHHHHHHH CS
         HHH   1 sleglipasreeLlalPGVGpktAeaIl 28 
                 +++g +p  +++L++lPG G+ktA++Il
  KIR62691.1 112 RYDGQVPGKLDDLVTLPGMGRKTANVIL 139
                 79*************************8 PP

>> EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   4.9   1.9e-06    0.0083       1      17 []     200     216 ..     200     216 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.9e-06
  EndIII_4Fe-2S   1 CTARkPkCeaCPLaDlC 17 
                    C A+kP+C+aC L  lC
     KIR62691.1 200 CHAKKPACGACTLVKLC 216
                    ***********999998 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.93   4.2e+03      23      39 ..      71      87 ..      61      90 .. 0.81
   2 ?    9.7   0.0   0.00028       1.2      35      51 ..     122     138 ..     115     142 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.93
                --SHHHHHHS-HHHHHT CS
       HHH_5 23 iesvedlaaadveeLak 39
                + + +d a ad++eL +
  KIR62691.1 71 YPTAADYAGADRAELEE 87
                56888999999999987 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00028
                 HHHHTSTTS-HHHHHHH CS
       HHH_5  35 eeLakipGiGkktAeri 51 
                 ++L ++pG+G ktA  i
  KIR62691.1 122 DDLVTLPGMGRKTANVI 138
                 78999999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2258.70
//
Query:       KIR62692.1  [L=208]
Description: alkyl hydroperoxide reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-18   65.4   0.0      6e-18   65.0   0.0    1.1  1  Redoxin        Redoxin
    2.2e-17   63.1   0.0    2.9e-17   62.7   0.0    1.1  1  AhpC-TSA       AhpC/TSA family
    3.9e-07   30.0   0.0    6.8e-07   29.2   0.0    1.4  1  Thioredoxin    Thioredoxin
    5.2e-07   29.9   0.0    7.5e-07   29.4   0.0    1.2  1  Thioredoxin_8  Thioredoxin-like
  ------ inclusion threshold ------
       0.11   11.7   0.0       0.15   11.3   0.0    1.2  1  T4_deiodinase  Iodothyronine deiodinase


Domain annotation for each model (and alignments):
>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   1.7e-21     6e-18       5     135 ..      70     188 ..      66     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 1.7e-21
                 BB---ECCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH.TT-TSEEEE-TTSHHHHHTT CS
     Redoxin   5 kaPdftlplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgk.eglkfpvlsDgsaaftkalG 102
                 ++P++tl  + t+g  v l++++g   vvn +++ +cP+C++e+p+++ l+e+ +++  +v++v++ ++  + + +g+  g+ fpvl D++ ++ +al+
  KIR62692.1  70 ELPELTL-PCFTGGDLVALRDVRGPA-VVNLWAS-WCPPCRKELPAFQRLSER-ADGRLQVIGVNTRDSRDAAQSIGEdFGVRFPVLFDQGESLRRALN 164
                 6899998.5699*********98877.*******.******************.***************9988888887******************** PP

                 -TTEEE.GGGEEE-EEEEEEETTEEEEEEESSS CS
     Redoxin 103 lrleedaseglrtpryavidedgkvvylevepe 135
                  +         + p ++++ +dg+++++++   
  KIR62692.1 165 RN---------AVPLTVLVGADGRIRHVDTSGA 188
                 77.........****************998665 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   8.1e-21   2.9e-17       4     123 ..      70     182 ..      68     183 .. 0.93

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 8.1e-21
                 B----EEESTTCEE.EECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEES.SSCHHHHHHHHH-H.SSEEEE-TTSHHHHHTT- CS
    AhpC-TSA   4 kapdfelknadget.vslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsv.dspeshkkfiekeslnfpllsDeegkvakaygv 100
                 + p+ +l++  g++ v l d++g p+v++ +++ wcp+C++elpa+++l e+ +   ++vigv++ ds ++ ++  e+ ++ fp+l D+ + + +a++ 
  KIR62692.1  70 ELPELTLPCFTGGDlVALRDVRG-PAVVNLWAS-WCPPCRKELPAFQRLSERAD-GRLQVIGVNTrDSRDAAQSIGEDFGVRFPVLFDQGESLRRALNR 165
                 679999997776555********.*********.**************998877.77********999******************************9 PP

                 EETTTTECSCEEEEE-TTSBEEE CS
    AhpC-TSA 101 lkeekglalratfvidkegkiry 123
                        a++ t+++ ++g ir+
  KIR62692.1 166 N------AVPLTVLVGADGRIRH 182
                 9......**************98 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.9e-10   6.8e-07      17      68 ..      90     141 ..      85     164 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.9e-10
                  TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHT CS
  Thioredoxin  17 ekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakky 68 
                   + + +v+ +A+wC++C++  P +++l+e+  ++++++ v++ +++d a+ +
   KIR62692.1  90 VRGPAVVNLWASWCPPCRKELPAFQRLSERADGRLQVIGVNTRDSRDAAQSI 141
                  56789************************************99988887754 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   2.1e-10   7.5e-07       5      95 .]      95     180 ..      93     180 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 2.1e-10
                    EEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS-TTSEE.EE-TT-HHHHTT-S--TT-SEEEEE-TT-BE CS
  Thioredoxin_8   5 lLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkknkkpwlsvpfddkkrnklkkkynvkaiPtlvvldkngev 95 
                    ++  +aswcppc++ +p  ++l+e+     +++++ v+   ++++ ++  ++     +++p+  ++ + l++ +n +a+P +v+++ +g++
     KIR62692.1  95 VVNLWASWCPPCRKELPAFQRLSERAD--GRLQVIGVNTRDSRDAAQSIGEDF---GVRFPVLFDQGESLRRALNRNAVPLTVLVGADGRI 180
                    6889**********************9..**********99988888888888...666666666789*********************97 PP

>> T4_deiodinase  Iodothyronine deiodinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.3e-05      0.15      90     129 ..      79     118 ..      61     129 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.3e-05
  T4_deiodinase  90 teschildfaqgnrPlvlnfGsatcPpflaklsafkrlve 129
                    + + +++   +   P v+n+ ++ cPp   +l+af+rl e
     KIR62692.1  79 FTGGDLVALRDVRGPAVVNLWASWCPPCRKELPAFQRLSE 118
                    555566666667789**********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1626.70
//
Query:       KIR62693.1  [L=232]
Description: NUDIX hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-12   45.4   0.3    1.2e-11   44.8   0.3    1.3  1  NUDIX       NUDIX domain
  ------ inclusion threshold ------
       0.16   11.6   0.1       0.28   10.8   0.1    1.4  1  Leu_leader  Leucine operon leader peptide


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.3   1.3e-15   1.2e-11       3     116 ..      36     154 ..      34     168 .. 0.72

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 1.3e-15
                 EEEEEEEEEETTSE...EEEEEES..SSSTTTE.ESSEEECBTTS.HHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEC CS
       NUDIX   3 rravgvvllnekge...vLlvrrs..kkpfpgW.elPgGkvepgE.tpeeAArREleEEtGleaellellgrlhylapydgpygd.eheilyvfleeve 93 
                   av v+l +e g+   vL+++r+   + ++g  ++PgG  +pg+ + +++A+RE++EE+ l++  +++l++l+        + +  ++++  +l+ ++
  KIR62693.1  36 ESAVLVLLGEEPGAgpdVLVLQRAatLRNHAGQpAFPGGAADPGDaDSAATALREANEEVDLDPASVTVLAELPR------LWIPvSDFVVTPVLGWWH 128
                 56777777777788899******967555556225************************************6654......455434444444444444 PP

                 SGCSST..STTTEEEEEEEEHHHH.H CS
       NUDIX  94 gelepn..denevsevrwvpleel.l 116
                    ++   +++ev+ v  +p++el +
  KIR62693.1 129 RPHPVHprEPAEVAHVARLPVAELvA 154
                 33333356889999998899999942 PP

>> Leu_leader  Leucine operon leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   3.1e-05      0.28      15      23 ..     171     179 ..     170     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.1e-05
  Leu_leader  15 AfnvRGrlV 23 
                 Af+vRG+lV
  KIR62693.1 171 AFSVRGMLV 179
                 9*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1722.64
//
Query:       KIR62694.1  [L=392]
Description: peptidase S1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-21   77.2   1.8    2.4e-21   77.2   1.8    1.6  2  Trypsin_2      Trypsin-like peptidase domain
    1.9e-18   66.8  15.9    3.3e-18   66.0  15.9    1.3  1  Colicin_V      Colicin V production protein
    3.1e-08   33.7   0.0    5.2e-08   33.0   0.0    1.4  1  Trypsin        Trypsin
  ------ inclusion threshold ------
      0.043   13.6   0.0      0.083   12.6   0.0    1.5  1  Peptidase_S29  Hepatitis C virus NS3 protease
      0.081   13.1   0.8         15    5.8   0.3    2.6  2  T4SS_CagC      Cag pathogenicity island, type IV secretory sy


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         5   1.8e+04      75      84 ..     187     196 ..     170     206 .. 0.46
   2 !   77.2   1.8   6.8e-25   2.4e-21       1     150 []     216     352 ..     216     352 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 5
   Trypsin_2  75 lgpsealkgg 84 
                 l++s+ ++ g
  KIR62694.1 187 LAGSQVVADG 196
                 3333333333 PP

  == domain 2  score: 77.2 bits;  conditional E-value: 6.8e-25
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggeks 99 
                 GsGf++++d  ++TnaHvv++  ++av          + +g +++++vv +dp++DlA+l+v   ++ + p l+++  +a +g  +++v+G+pl g+  
  KIR62694.1 216 GSGFVYADDR-VMTNAHVVAGTRSVAV----------ELNGDRYDGEVVVYDPDRDLAVLRV---PGLPGPSLRFAAGNAGSGA-DAIVLGFPLDGPY- 298
                 9*********.****************..........9************************...9999999998887777777.**********999. PP

   Trypsin_2 100 gsvssGivsgvve....sesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                   ++s ++++v++    +  +++   +++ +  a + +G+SGGpl+ s+G v+G+
  KIR62694.1 299 -NAQSARIRDVDRitgpDIYSSGDVTREIYTIRALVRSGNSGGPLLSSNGLVLGV 352
                 .8***********7765444444444444499999999***************97 PP

>> Colicin_V  Colicin V production protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0  15.9   9.1e-22   3.3e-18       1     142 [.       4     144 ..       4     146 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 9.1e-22
   Colicin_V   1 lDliillilllsallGlrrGfvrevlsllgwvvafvvasllypslaellaelilspalaaiiaflllfllvllivsllgallsklvsktglglldrllG 99 
                 +Dl++ll++l++a+ G+r+Gfv  vls+ g++++++++ + +p la ++++ +++++l +++a + l +++ +++++lg+ l++ ++   ++++d + G
  KIR62694.1   4 VDLVLLLLMLVFAISGYRQGFVIGVLSFSGFFLGALIGLQVGPLLARQFTD-SGTRVLISLVAVFGLAVVGQALAGWLGSHLRQTITSDIAKRADDIGG 101
                 6**************************************************.79********************************************* PP

   Colicin_V 100 aifGllkglllvvllllllalvplpkvqewlqnSvlapllesl 142
                 a+++l++++l+++l+ + l   +lp+ ++ ++nS l+++++++
  KIR62694.1 102 AVVSLFAVMLVAWLVAVPLGSSSLPWLASSVRNSALLTVVDRV 144
                 *************88889999999***99*********99876 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   1.5e-11   5.2e-08      28     212 ..     217     367 ..     196     376 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.5e-11
                 EEEEEETTEEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCSTTHTTSTTTEEEEEE CS
     Trypsin  28 gGslisenwvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpvgttclvsG 126
                 +G+++ ++ v+T+aH+v ++++v v        + +g+  +++ e  +v   y+p++   D+a+l++     +g++ r ++  a       g+  +v G
  KIR62694.1 217 SGFVYADDRVMTNAHVVAGTRSVAV--------ELNGD--RYDGEV-VV---YDPDR---DLAVLRVPGL--PGPSLRFAAGNA-----GSGADAIVLG 291
                 69****************9777766........33443..444444.55...99*98...*********9..788887777777.....55999***** PP

                 SSBSSTSSBSSBEEEEEEEEEEHHHHHHH.TTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEESSSSCTTSEEEEE CS
     Trypsin 127 wgrtkekgksdtlqevevpvvsretcksa.ykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswgkgcakgnrpgvyt 212
                 ++ +   g +++ q+++++ v+r t      +g+vt++   + a         G+SGGPl+ s+g + G++++    +++n+ g+++
  KIR62694.1 292 FPLD---G-PYNAQSARIRDVDRITGPDIySSGDVTREIYTIRA-----LVRSGNSGGPLLSSNGLVLGVIFAA-AADDPNT-GFAV 367
                 ***6...6.7789999999999998888756666*********9.....89**************99***9996.4455544.6655 PP

>> Peptidase_S29  Hepatitis C virus NS3 protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.3e-05     0.083     107     144 ..     335     376 ..     315     381 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
  Peptidase_S29 107 kGssGsPilCdsGhvvGllvaav....csggvvkavrfvPve 144
                     G sG+P+l ++G v+G++ aa     ++g  v+a + +Pv 
     KIR62694.1 335 SGNSGGPLLSSNGLVLGVIFAAAaddpNTGFAVTAAEARPVA 376
                    59***************9988862333466777777777775 PP

>> T4SS_CagC  Cag pathogenicity island, type IV secretory system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3    0.0042        15      40     104 ..      57     130 ..      38     133 .. 0.71
   2 ?    4.9   0.0     0.008        29      59      88 ..     348     377 ..     342     381 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0042
   T4SS_CagC  40 ktlviilisl..lvlvGicvalflivkriad........addikeksevvfavarviallalaaaiiyllpwvys 104
                   + i l+++  l++vG   a +l+              addi      +fav  v+ l+a+  +   l pw+ s
  KIR62694.1  57 TRVLISLVAVfgLAVVGQALAGWLGSHLRQTitsdiakrADDIGGAVVSLFAVMLVAWLVAVPLGSSSL-PWLAS 130
                 44555565553457778877777764321112224666899999999999************9998888.98876 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.008
   T4SS_CagC  59 lflivkriadaddikeksevvfavarvial 88 
                 l+l+v   a add+  + +v  a ar++al
  KIR62694.1 348 LVLGVIFAAAADDPNTGFAVTAAEARPVAL 377
                 6788888899*****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.19s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3094.71
//
Query:       KIR62695.1  [L=235]
Description: phosphoesterase PA-phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-16   59.3  10.9    3.3e-16   59.3  10.9    2.6  3  PAP2             PAP2 superfamily
  ------ inclusion threshold ------
      0.067   12.9  24.9        1.7    8.3  24.9    3.0  1  PAP2_3           PAP2 superfamily
       0.17   11.7   4.1       0.55   10.0   1.1    2.2  2  TMEM208_SND2     SRP-independent targeting protein 2/TMEM208
       0.36   10.6   9.6        4.6    7.1   0.1    3.3  3  DUF2427          Domain of unknown function (DUF2427)
       0.45   10.3   0.0       0.45   10.3   0.0    2.4  3  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l
        3.6    7.6   9.1       0.38   10.7   3.8    2.2  2  PLDc_N           Phospholipase_D-nuclease N-terminal


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       0.4   1.2e+03      86     104 ..      16      34 ..       2      40 .. 0.58
   2 ?   -1.6   4.7      0.72   2.2e+03      63      91 ..      77     102 ..      16     118 .. 0.69
   3 !   59.3  10.9   1.1e-19   3.3e-16      10     132 ..     102     212 ..      67     215 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.4
        PAP2  86 llalillllavlvalsRly 104
                 +++l+ ++++++v ++R++
  KIR62695.1  16 VALLLSVMVLLGVLVTRVF 34 
                 4444445555555555555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.72
        PAP2  63 fafalalllalllrrkrkkiglvllalil 91 
                 +++ +a++l l+l+r+r++   + l++ +
  KIR62695.1  77 VTAIVAVVLRLVLHRWREP---LFLCAAV 102
                 4556666677777777776...3333333 PP

  == domain 3  score: 59.3 bits;  conditional E-value: 1.1e-19
        PAP2  10 alaalltsvl.KdlvgrpRPfflaeetkldtqvstletseskeakesfPSgHsafafalalllalllrrkrkkig.lvllalillllavlvalsRlylg 106
                 ++a++l+ +l  ++++r RP + +                 +++++sfPSgH+++a+al++ +a ll+ + + +  +v+++++l+l+ v+val+R+y g
  KIR62695.1 102 VSAQALVFLLtTMAIDRRRPAVEHMDV--------------SPPTSSFPSGHTSAAVALYVGIAVLLALRARSTPaKVAWWALLVLVPVGVALTRMYRG 186
                 333333333335555565555433332..............44456***************************88999999999999************ PP

        PAP2 107 vHflsDvlaGlliGialaalayrlvq 132
                 +H++sDvla++l G+++++++ r v 
  KIR62695.1 187 MHHPSDVLASFLNGGTCVVIMARAVL 212
                 ******************99998776 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  24.9   0.00056       1.7      93     187 ..     101     203 ..       7     206 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00056
      PAP2_3  93 fvdtvaaaslag...alrdgasravllrgtienglaafPSlHvawallv..alalwrlrrkr......llrvlalllnvlmivatvatgnHYlvDviaG 180
                 +v+++a     +   +   +  r  + +  ++ + ++fPS H+  a+ +  ++a+    r r      ++++l++l++v ++++ ++ g H   Dv+a+
  KIR62695.1 101 AVSAQALV---FlltTMAIDRRRPAVEHMDVSPPTSSFPSGHTSAAVALyvGIAVLLALRARstpakvAWWALLVLVPVGVALTRMYRGMHHPSDVLAS 196
                 22223333...23324444444455555556778888*****86655441133333333322344555778888999********************** PP

      PAP2_3 181 valalva 187
                 ++ +  +
  KIR62695.1 197 FLNGGTC 203
                 9877666 PP

>> TMEM208_SND2  SRP-independent targeting protein 2/TMEM208
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.1   0.00018      0.55      15      63 ..      66     112 ..      64     125 .. 0.80
   2 ?    2.1   0.1      0.05   1.5e+02      28      59 ..     144     177 ..     137     192 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00018
  TMEM208_SND2  15 atLknlrlislavnalylllrlllrsslrpr.slllylllslpalllyyv 63 
                   +tL  ++li+l++ +++++lrl+l   +r+r  l+l++++s++al+ + +
    KIR62695.1  66 STLASTQLIVLVTAIVAVVLRLVL---HRWRePLFLCAAVSAQALVFLLT 112
                   58999*******************...99995677777777777665544 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.05
  TMEM208_SND2  28 nalylllrlll..rsslrprslllylllslpall 59 
                    aly+ + +ll  r +++p ++++++ll l+ ++
    KIR62695.1 144 VALYVGIAVLLalRARSTPAKVAWWALLVLVPVG 177
                   4444444444444555555555555554444333 PP

>> DUF2427  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0015       4.6      41      77 ..       7      43 ..       4      52 .. 0.82
   2 ?    3.4   0.7     0.021        64      51      93 ..      72     115 ..      60     118 .. 0.56
   3 ?    4.4   0.5     0.011        32      27      60 ..     168     201 ..     163     208 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0015
     DUF2427 41 laksrwylpvqivnlvlavlglllghiykgstPelyp 77
                 a +r+ lpv  + +v+++lg+l+  ++  + P   +
  KIR62695.1  7 QAAKRVLLPVALLLSVMVLLGVLVTRVFAHTWPLTVE 43
                6789999*********************998876555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.021
     DUF2427  51 qivnlvlavlglllghi.ykgstPelypnniyaklswillilla 93 
                 q + lv+a+++++l ++ ++ + P +   ++ a+  ++ll ++a
  KIR62695.1  72 QLIVLVTAIVAVVLRLVlHRWREPLFLCAAVSAQALVFLLTTMA 115
                 44444555554444333366666666666666666666666665 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.011
     DUF2427  27 lalvvvyPvalvLslaksrwylpvqivnlvlavl 60 
                  al+v+ Pv+++L  + + ++ p  ++++ l+  
  KIR62695.1 168 WALLVLVPVGVALTRMYRGMHHPSDVLASFLNGG 201
                 688999*****************99999887755 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.4       1.3   3.9e+03      36      50 ..      17      31 ..      15      34 .. 0.72
   2 ?   10.3   0.0   0.00015      0.45      12      49 ..      51      88 ..      43      94 .. 0.86
   3 ?   -1.8   0.1      0.86   2.6e+03      31      44 ..     141     154 ..     133     156 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.3
  Phage_holin_2_4 36 alvGlavAliGlLvn 50
                     al+  ++ l+G+Lv+
       KIR62695.1 17 ALLLSVMVLLGVLVT 31
                     566666778999987 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00015
  Phage_holin_2_4 12 agnkatggGavvsfaGflasselialvGlavAliGlLv 49
                     a+++++g   v  ++  las++li lv ++vA++  Lv
       KIR62695.1 51 AADRTAGWNNVSLVFSTLASTQLIVLVTAIVAVVLRLV 88
                     788888888888899******************98887 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.86
  Phage_holin_2_4  31 sselialvGlavAl 44 
                      s+ ++ +vG+av l
       KIR62695.1 141 SAAVALYVGIAVLL 154
                      55566688988865 PP

>> PLDc_N  Phospholipase_D-nuclease N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       1.2   3.5e+03       4      11 ..      81      88 ..      74      96 .. 0.48
   2 ?   10.7   3.8   0.00013      0.38       2      31 ..     146     176 ..     143     180 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
      PLDc_N  4 iialidii 11
                ++++++++
  KIR62695.1 81 VAVVLRLV 88
                33444444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00013
      PLDc_N   2 lwiialidiird.rnpssklaWllvilflPv 31 
                 l++ +++ + ++ r++ +k+aW  +++++Pv
  KIR62695.1 146 LYVGIAVLLALRaRSTPAKVAWWALLVLVPV 176
                 555445555556688888************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       858  (0.0478554); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1720.84
//
Query:       KIR62696.1  [L=456]
Description: peptidase S8 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-40  138.1   2.4    2.1e-39  135.5   2.4    1.9  1  Peptidase_S8  Subtilase family


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.5   2.4   1.2e-43   2.1e-39       1     298 []     102     352 ..     102     352 .. 0.89

  Alignments for each domain:
  == domain 1  score: 135.5 bits;  conditional E-value: 1.2e-43
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvl 97 
                   g+gv+vav+D+Gvd shpdl  ++                + g d  +  + ++ d  g    HGt vAG++a+  ++  +++g+ap+akil v+vl
    KIR62696.1 102 GRGVVVAVIDSGVDGSHPDLAGQV----------------LPGIDLVDDGDTDGPDPVG----HGTTVAGLIAGRNDDRRGAVGLAPDAKILPVRVL 178
                   89*******************432................5666666666666666666....********************************** PP

                   STTSB-HH..HHHHHHHHHHHHCT-SEEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEEES CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  98 dtsggsmetgteliraieeaaedkvdvinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvgayt 194
                   d+++  +     ++r++++a+ ++++vin+slg+s + p         a+++a   ++v+vv+++GN       +++  +v +p+   +vi+v++ +
    KIR62696.1 179 DDENRYDDA-LIVARGVRWAVDNGARVINLSLGGSGDSPALAA-----ALDYAF-ARDVVVVACTGNVA-----ASSDTNVWYPAREPGVIAVAGLE 263
                   ****99965.888999*****************9988888886.....899999.89************.....46789999*************** PP

                   TTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS-EE......S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 195 tegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAqdlgkadnie 291
                    +++  +  s    +       ++ap++ +v   +  +        y  ++GTS+AsP++a+aaAl++ + p++++ +v   l+ tA+d+   +++ 
    KIR62696.1 264 RASDNLWSGSITGRAT-----VLTAPATGLVGARPGSG--------YWRVQGTSFASPLVAAAAALIRARWPQMSAGEVVNRLISTARDI--GPTGR 345
                   8877665555555554.....7*******999999999........*******************************************9..667** PP

                   SSSSSTT CS
                   xxxxxxx RF
  Peptidase_S8 292 sfaqGaG 298
                   + ++G+G
    KIR62696.1 346 DDRFGYG 352
                   ******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3230.53
//
Query:       KIR62697.1  [L=1328]
Description: secretion protein EccC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-91  304.0   0.0      1e-48  165.8   0.0    4.7  4  FtsK_SpoIIIE   FtsK/SpoIIIE family
    3.8e-08   33.9   5.7     0.0085   16.5   0.3    4.1  4  AAA_16         AAA ATPase domain
      1e-07   32.3   0.0     0.0031   17.8   0.0    3.7  3  AAA_22         AAA domain
    3.2e-06   27.1   0.0      0.035   14.0   0.0    4.1  4  NACHT          NACHT domain
    1.2e-05   25.5   0.1      0.043   13.9   0.0    2.6  3  DUF87          Helicase HerA, central domain
    1.4e-05   24.7   1.2       0.35   10.7   0.1    3.5  3  AAA_29         P-loop containing region of AAA domain
    1.5e-05   25.0   0.0          1    9.4   0.0    3.4  3  MMR_HSR1       50S ribosome-binding GTPase
    0.00051   19.7   0.6        2.9    7.4   0.0    3.6  3  AAA_25         AAA domain
    0.00093   19.6   0.0        1.8    9.0   0.0    3.2  3  RNA_helicase   RNA helicase
     0.0014   17.5   0.0        2.1    7.1   0.0    3.1  3  Adeno_IVa2     Adenovirus IVa2 protein
     0.0021   18.4   0.0        1.6    9.0   0.0    3.2  3  AAA_19         AAA domain
     0.0028   18.1   0.8        3.1    8.3   0.3    3.2  3  ABC_tran       ABC transporter
     0.0056   17.2   0.1        1.1    9.7   0.0    2.7  3  AAA_23         AAA domain
     0.0098   15.6   0.0        4.2    7.0   0.0    3.4  4  AAA_24         AAA domain
  ------ inclusion threshold ------
      0.012   14.8   1.4        4.5    6.4   0.1    2.8  3  DUF815         Protein of unknown function (DUF815)
      0.017   15.2   0.5        1.3    9.1   0.0    2.8  3  Dynamin_N      Dynamin family
      0.026   13.4   0.2       0.19   10.6   0.0    2.3  3  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
      0.058   13.6   0.1         13    6.1   0.0    2.9  3  Roc            Ras of Complex, Roc, domain of DAPkinase
       0.14   12.7   0.0         18    5.9   0.0    3.6  4  AAA_18         AAA domain
        0.2   10.2   0.1       0.48    8.9   0.1    1.5  2  DUF853         Bacterial protein of unknown function (DUF853)
       0.22   11.3   0.1        1.5    8.6   0.1    2.3  3  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
       0.28   11.1   0.0         25    4.7   0.0    2.7  3  ATPase_2       ATPase domain predominantly from Archaea


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   3.3e-26   2.7e-23      15     127 ..     456     576 ..     448     590 .. 0.87
   2 !   19.0   0.0   8.5e-07    0.0007     184     241 ..     590     642 ..     585     644 .. 0.92
   3 !  165.8   0.0   1.3e-51     1e-48      19     242 ..     817    1055 ..     811    1056 .. 0.89
   4 !   30.4   0.0   2.9e-10   2.4e-07      29      82 ..    1112    1164 ..    1100    1190 .. 0.90

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 3.3e-26
                   --TTEEEEEEETTS-EEEEEGGGS-......SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS.SCGGGTT-TTBSS...S-B-SHH CS
  FtsK_SpoIIIE  15 ssqlpvalgkeisgnplvldlkkma.....shllvaGatgsGKStalntLilSlatthtPeeVqliliDykgv.elsalediphlls..vavatdpe 103
                   +++l v +g+   g +++ldlk++a     +h+l++GatgsGKS+ l+tL+l+la+th+ e+++++l+D+kg+ ++++++++ph+++  ++ a+   
    KIR62697.1 456 RDRLRVPIGVGADGGAIELDLKESAqdgmgPHGLLIGATGSGKSELLRTLVLGLAATHSSEQLNFVLVDFKGGaTFASFDRLPHTAAviTNLADALP 552
                   445555555555599***********************************************************************97778888888 PP

                   HHHHHHHHHHHHHHHHHHHHHHTT CS
  FtsK_SpoIIIE 104 ralraleeLvkemeeryalfreag 127
                    + r+++++  e+ +r++l+r ag
    KIR62697.1 553 LVDRMVDAINGELMRRQELLRRAG 576
                   99999999999*********9887 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 8.5e-07
                   ---B-----EEEEEEC-HHHHHHHHHHH....HHHHHHHHHHHCGGGTEEEEEEES-- CS
  FtsK_SpoIIIE 184 agrelekrpslvvivderieLrlaapkdssvlvedaivRlarkgraaglHlllatqrl 241
                   ag  l+++psl+ + de+ eL  a+p+      +d++v ++r gr+ g+Hllla qrl
    KIR62697.1 590 AGTPLAPLPSLLLVCDEFSELLSAKPDF-----IDLFVQIGRLGRSLGVHLLLASQRL 642
                   56667899*************9999999.....***********************97 PP

  == domain 3  score: 165.8 bits;  conditional E-value: 1.3e-51
                    EEEEEEETTS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSSCGGGTT-TTBSS.S-B-SHHHHHHHHHHHH CS
  FtsK_SpoIIIE   19 pvalgkeisgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgvelsalediphllsvavatdperalraleeLv 113 
                     v+ ++e++++ l l l ++a+h+ v+G+++sGKS  l++L+++la+thtP e q +++D++g+ l+al d+ph++ v+++td   ++r++ eLv
    KIR62697.1  817 VVDKPFEQRRDLLWLTLGGSAGHVGVVGGPQSGKSGLLRALVCALALTHTPVEAQVYCLDFGGGGLAALRDLPHVGGVSGRTDQTAVRRTVGELV 911 
                    567788999999999999***************************************************************************** PP

                    HHHHHHHHHHHHTT-SSHHH......HHHHHHHHHHTT---B-TT-..........................-----------B-----EEEEEE CS
  FtsK_SpoIIIE  114 kemeeryalfreagvrsiaa......ydgeiaedpldifgdvflvlDnyddlaaene....ritsLsnqgpsygvhvlvtagrelekrpslvviv 198 
                      + +r++ f+e gv+s+aa      + + +++  +d fgdvflv+D++++l+ e       +t+L+ +g+sygvhv++ta r+   rp++++++
    KIR62697.1  912 TVLVDRERRFAELGVESMAAyrqrraALAAAGQPVTDPFGDVFLVVDGWNTLRSEYDdlepLVTELATRGLSYGVHVVATALRWTDYRPAIRDLF 1006
                    ********************5444444444555567789****************99999*********************************** PP

                    C-HHHHHHHHHHH........HHHHHHH.HHHHCG...GGTEEEEEEES--- CS
  FtsK_SpoIIIE  199 derieLrlaapkds....svlvedaivR.larkgr...aaglHlllatqrls 242 
                    ++r+eLrl +p+ds    + ++ +++++ +   gr    ++lH+l a +rl+
    KIR62697.1 1007 GSRVELRLGDPSDSllvrRAAATTVPDKtP---GRgmtGESLHFLTALPRLA 1055
                    *************66555444555555423...444459**********987 PP

  == domain 4  score: 30.4 bits;  conditional E-value: 2.9e-10
                    -EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS CS
  FtsK_SpoIIIE   29 nplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgv 82  
                    +p+vld ++ + hllv G  + GKS +l++L + ++++ tP++ + il+Dy   
    KIR62697.1 1112 RPVVLDFATEP-HLLVFGDAECGKSSFLRALAATIVSRFTPQQARVILVDYRRS 1164
                    699********.***************************************865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.8   3.1e+03     116     145 ..     302     338 ..     233     345 .. 0.53
   2 !   16.5   0.3     1e-05    0.0085      15     164 ..     476     627 ..     471     637 .. 0.59
   3 ?    1.8   0.1      0.35   2.8e+02      21      49 ..     834     862 ..     822     970 .. 0.77
   4 !   15.1   0.0   2.7e-05     0.022      25     158 ..    1122    1241 ..    1111    1257 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.8
      AAA_16 116 a..srllellkrllallsrder....p.lvlvlDdlq 145
                    +rll+++ +  ++ s+ ++    p +v+vlD  +
  KIR62697.1 302 VelERLLDEVLASRSRFSPAGPatdgPhVVVVLDGGD 338
                 2444444444433322222122455444999999755 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1e-05
      AAA_16  15 alervrsgrpelvllsGesGvGKsslvrellralekd.............ggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawre 99 
                 + e++ +g ++  ll+G+ G+GKs l+r+l   l ++             +g ++ + +d+l+  ++ ++ la+al    l+  + d+  + el + +e
  KIR62697.1 476 LKESAQDGMGPHGLLIGATGSGKSELLRTLVLGLAAThsseqlnfvlvdfKGGATFASFDRLPHTAAVITnLADAL---PLVDRMVDA-INGELMRRQE 570
                 4567889999*****************9888655555567778888777766667777777744433333344444...555555555.3324444333 PP

      AAA_16 100 kleealaavpelagaeasrllellkrllallsrderp.lvlvlDdlqwadeaslqllaaLlrlles 164
                  l+++++  ++l++ e+ r + +  + l        p l+lv+D++  + +a  ++++++++ +  
  KIR62697.1 571 -LLRRAGNYASLRDYERARAAGTPLAPL--------PsLLLVCDEFSELLSAKPDFIDLFVQIGRL 627
                 .333333233333333333222222222........238888888888888777777777776555 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.35
      AAA_16  21 sgrpelvllsGesGvGKsslvrellrale 49 
                  g+ + v ++G + +GKs l+r+l  al 
  KIR62697.1 834 GGSAGHVGVVGGPQSGKSGLLRALVCALA 862
                 56668999*************99875554 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 2.7e-05
      AAA_16   25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaes..aeleawrekleealaavpelagaeasrl 119 
                  + +l+ G++ +GKss +r+l+  +  +   f+ ++++          l+++  r +ll ++++e++     ++a  ++l e++a   +l+       
  KIR62697.1 1122 PHLLVFGDAECGKSSFLRALAATIVSR---FTPQQARVI--------LVDYR-R-SLLGAIETEHRIgyGTAAARTTELVESAAGYMQLRL----PG 1201
                  799******************988877...666666665........55555.4.888888888444002233333333333333333333....33 PP

      AAA_16  120 lellkrllallsrderp.lvlvlDdlqwadeaslqllaaL 158 
                   ++  + l++ s  + p l +++Dd + + +++ + l+aL
  KIR62697.1 1202 PDVTPAQLRQRSWWSGPeLFVLVDDYDLVASGPVNPLRAL 1241
                  4444444433333333448888888888888777777766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.8e-06    0.0031       7     103 ..     487     610 ..     482     644 .. 0.57
   2 ?    1.7   0.0      0.36     3e+02       4      29 ..     836     861 ..     833     979 .. 0.86
   3 !    8.1   0.0    0.0038       3.1       5      46 ..    1121    1160 ..    1118    1258 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.8e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl.lrellralglelka....................erlsseellealeq 84 
                 +++++G +G+GK+ llr+l+  l   a +  e+  +v+v+ +++ + +++ +     a+  +l +                    e l++   ++ l++
  KIR62697.1 487 HGLLIGATGSGKSELLRTLVLGLA--ATHSSEQLNFVLVDFKGGATFASFdRLPHTAAVITNLADalplvdrmvdaingelmrrqELLRRAGNYASLRD 583
                 799*******************94..4444466666677777777666664322222222222223444445555555534444433333333344444 PP

      AAA_22  85 alrarav........ielliiDEaqhl 103
                 + rara+          ll+ DE+  l
  KIR62697.1 584 YERARAAgtplaplpSLLLVCDEFSEL 610
                 444444466677776677777777664 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.36
      AAA_22   4 tagilvvtGesGtGKTtllrrlleql 29 
                 +ag++ v+G + +GK+ llr l+  l
  KIR62697.1 836 SAGHVGVVGGPQSGKSGLLRALVCAL 861
                 6788999************9997655 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0038
      AAA_22    5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvt 46  
                  + +l+v+G + +GK+  lr l+ + + +  +  ++++v++v+
  KIR62697.1 1121 EPHLLVFGDAECGKSSFLRALAATIVSRFTP--QQARVILVD 1160
                  6799*******************98665444..455555554 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.2e-05     0.035       4      39 ..     489     523 ..     488     623 .. 0.72
   2 ?    1.2   0.0      0.38   3.1e+02       5      32 ..     842     869 ..     839     878 .. 0.81
   3 ?   -0.9   0.0       1.7   1.4e+03      80     127 ..     950     992 ..     900    1013 .. 0.78
   4 ?    5.6   0.0     0.017        14       4      37 ..    1125    1157 ..    1123    1172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.2e-05
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEE CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpqgafklvFf 39 
                 +l G+ GsGK+ Ll+ l+l +a+ +  ++   +v++
  KIR62697.1 489 LLIGATGSGKSELLRTLVLGLAATHSSEQ-LNFVLV 523
                 589*********************98886.466654 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.38
                 EEC-TTTCHHHHHHHHHHHHCTS-SCCC CS
       NACHT   5 lqGeaGsGKTtLlqklalawaegklpqg 32 
                 + G + sGK+ Ll+ l+ a+a  + p +
  KIR62697.1 842 VVGGPQSGKSGLLRALVCALALTHTPVE 869
                 6778889*************99888765 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.7
                 CCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEE CS
       NACHT  80 perlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltv 127
                 +  + l++Dg + l+++ +      ++ l +el ++ l  ++++++t+
  KIR62697.1 950 FGDVFLVVDGWNTLRSEYDD-----LEPLVTELATRGLSYGVHVVATA 992
                 345669********998887.....78888888888888888888775 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.017
                  EEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEE CS
       NACHT    4 ilqGeaGsGKTtLlqklalawaegklpqgafklv 37  
                  ++ G+a +GK+ +l+ la ++ ++  pq+a +++
  KIR62697.1 1125 LVFGDAECGKSSFLRALAATIVSRFTPQQA-RVI 1157
                  788******************999999975.544 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.3e-05     0.043      24      81 ..     486     546 ..     469     588 .. 0.75
   2 ?   -2.2   0.2       4.5   3.7e+03      25      48 ..     839     862 ..     837     867 .. 0.89
   3 !    8.4   0.0    0.0026       2.1      13      59 ..    1113    1160 ..    1103    1162 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.3e-05
       DUF87  24 rHlAilgsTGsGKSntvavLleelle...kkgatililDpHG..EYgkalekllsekvkvitp 81 
                  H + +g TGsGKS + + L+  l++   + +++ +++D  G   +++++  +l+ ++ vit+
  KIR62697.1 486 PHGLLIGATGSGKSELLRTLVLGLAAthsSEQLNFVLVDFKGgaTFASFD--RLPHTAAVITN 546
                 588899*******************9888888899999998833333333..66666666665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.5
       DUF87  25 HlAilgsTGsGKSntvavLleell 48 
                 H++++g   sGKS + + L+  l+
  KIR62697.1 839 HVGVVGGPQSGKSGLLRALVCALA 862
                 999999999********9998775 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0026
       DUF87   13 pvyldlnklvtrHlAilgsTGsGKSntvavLleelle...kkgatililD 59  
                  pv ld   + + Hl+++g +  GKS + + L + +++    ++a+++++D
  KIR62697.1 1113 PVVLDF--ATEPHLLVFGDAECGKSSFLRALAATIVSrftPQQARVILVD 1160
                  567777..5689*************************9987788999999 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00042      0.35      23      39 ..     485     502 ..     475     519 .. 0.78
   2 ?    3.2   0.2     0.093        76      26      46 ..     841     861 ..     832     867 .. 0.82
   3 !    7.1   0.0    0.0054       4.4      18      47 ..    1117    1146 ..    1111    1152 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00042
      AAA_29  23 g.atlltGpsGsGKSTll 39 
                 g   ll+G++GsGKS ll
  KIR62697.1 485 GpHGLLIGATGSGKSELL 502
                 3456***********998 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.093
      AAA_29  26 lltGpsGsGKSTllDAiqalL 46 
                  ++G   sGKS ll A+   L
  KIR62697.1 841 GVVGGPQSGKSGLLRALVCAL 861
                 5789999*******9987665 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0054
      AAA_29   18 eidlkgatlltGpsGsGKSTllDAiqalLv 47  
                  ++ ++   l+ G+ + GKS++l A++a +v
  KIR62697.1 1117 DFATEPHLLVFGDAECGKSSFLRALAATIV 1146
                  565555789***************998776 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.019        16       3      22 ..     489     508 ..     487     526 .. 0.82
   2 !    9.4   0.0    0.0013         1       1      24 [.     839     862 ..     839     917 .. 0.89
   3 ?    5.9   0.0     0.016        13       3      22 ..    1125    1144 ..    1123    1162 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.019
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 +++G + +GKS L+++l+  
  KIR62697.1 489 LLIGATGSGKSELLRTLVLG 508
                 589**************865 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0013
                 EEEEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgeka 24 
                 +v++vG p +GKS L++al+ + a
  KIR62697.1 839 HVGVVGGPQSGKSGLLRALVCALA 862
                 599****************97644 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.016
                  EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1    3 aivGrpNvGKStLinaltge 22  
                  +++G    GKS++++al  +
  KIR62697.1 1125 LVFGDAECGKSSFLRALAAT 1144
                  7899*************875 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0036       2.9      36      83 ..     488     529 ..     483     582 .. 0.75
   2 ?    2.4   0.0      0.13     1e+02      32      60 ..     837     865 ..     805     877 .. 0.66
   3 ?    5.5   0.0     0.014        11      36      78 ..    1124    1160 ..    1109    1203 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0036
      AAA_25  36 allaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdse 83 
                 +ll+Ga+g+GK+ l+  l+l +a  +       +eq + ++v++ +++
  KIR62697.1 488 GLLIGATGSGKSELLRTLVLGLAATH------SSEQLNFVLVDFKGGA 529
                 79******************999655......3588888888887776 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.13
      AAA_25  32 agelallaGapgtGKttlaldlalava.tG 60 
                 ag++++ +G p +GK+ l+  l++a+a t 
  KIR62697.1 837 AGHVGV-VGGPQSGKSGLLRALVCALAlTH 865
                 455554.56678*************99444 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.014
      AAA_25   36 allaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvs 78  
                   l++G+  +GK+ ++  la+++++      ++ p+q++V++v+
  KIR62697.1 1124 LLVFGDAECGKSSFLRALAATIVS------RFTPQQARVILVD 1160
                  5789******************97......2456899998886 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.048        39       3      26 ..     490     513 ..     489     529 .. 0.82
   2 ?    1.6   0.0      0.43   3.5e+02       3      34 ..     842     872 ..     840     877 .. 0.76
   3 !    9.0   0.0    0.0022       1.8       2      34 ..    1125    1156 ..    1124    1166 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.048
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl 26 
                   l G++g GKS l ++L+  l+ + 
    KIR62697.1 490 LIGATGSGKSELLRTLVLGLAATH 513
                   78*************999888655 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.43
  RNA_helicase   3 lyGpsgeGKStlakeLakallkklklkkkdsv 34 
                   ++G ++ GKS l + L+ al+ +  ++ + +v
    KIR62697.1 842 VVGGPQSGKSGLLRALVCALALTH-TPVEAQV 872
                   789************999988444.4555555 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0022
  RNA_helicase    2 wlyGpsgeGKStlakeLakallkklklkkkdsv 34  
                    +++G++ +GKS++ + La+++ +++ ++++ +v
    KIR62697.1 1125 LVFGDAECGKSSFLRALAATIVSRF-TPQQARV 1156
                    799******************9998.5555554 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0025       2.1      90     108 ..     488     506 ..     479     521 .. 0.90
   2 ?    4.4   0.0     0.017        14      88     117 ..     839     867 ..     777     874 .. 0.89
   3 ?    2.0   0.0     0.091        74      91     135 ..    1125    1171 ..    1113    1174 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0025
  Adeno_IVa2  90 GviyGPtGsGksqllrnli 108
                 G++ G tGsGks+llr+l+
  KIR62697.1 488 GLLIGATGSGKSELLRTLV 506
                 8899*************97 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.017
  Adeno_IVa2  88 viGviyGPtGsGksqllrnlissklisPiP 117
                  +Gv+ GP  sGks llr+l+ +  +  +P
  KIR62697.1 839 HVGVVGGPQ-SGKSGLLRALVCALALTHTP 867
                 589**9996.8*********9987776666 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.091
  Adeno_IVa2   91 viyGPtGsGksqllrnlisskl..isPiPetvifitPekdmipPeel 135 
                  +++G + +Gks +lr+l ++ +    P    vi++  ++ ++  +e+
  KIR62697.1 1125 LVFGDAECGKSSFLRALAATIVsrFTPQQARVILVDYRRSLLGAIET 1171
                  578999**********9877551144555678888777777777766 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0     0.002       1.6      10      78 ..     485     559 ..     477     622 .. 0.64
   2 ?    4.5   0.1     0.052        42      11      52 ..     838     879 ..     834     938 .. 0.85
   3 ?    0.3   0.0      0.97   7.9e+02       9      49 ..    1120    1160 ..    1114    1230 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.002
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal.........l 78 
                  ++ l+++  G+GK+++l++ v  l ++++ +  +++lv f g A+    +rl    + a  i +la           
  KIR62697.1 485 GPHGLLIGATGSGKSELLRTLVLGLAATHSSEQLNFVLVDFKGGATFASFDRL---PHTAAVITNLADalplvdrmvD 559
                 56789************************999999999999999987777777...4555555555333344444431 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.052
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftg 52 
                 +++ v++Gp +GK+ +l++ v  l  +++   ++++++ f g
  KIR62697.1 838 GHVGVVGGPQSGKSGLLRALVCALALTHTPVEAQVYCLDFGG 879
                 6789***************99998888876668888887765 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.97
      AAA_19    9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillva 49  
                  +e++llv + + +GK+  l++  a +v++ + + ++++lv 
  KIR62697.1 1120 TEPHLLVFGDAECGKSSFLRALAATIVSRFTPQQARVILVD 1160
                  67889999999999999999999999888776666666665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.3    0.0038       3.1      15      32 ..     489     506 ..     483     520 .. 0.84
   2 ?    2.0   0.2      0.33   2.7e+02      13      32 ..     839     858 ..     834     871 .. 0.88
   3 ?    3.9   0.0     0.086        70       3      33 ..    1113    1143 ..    1111    1174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0038
                 EEEESTTSSHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlklla 32 
                  ++G +G+GKS Ll++l 
  KIR62697.1 489 LLIGATGSGKSELLRTLV 506
                 589************986 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.33
                 EEEEEESTTSSHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlklla 32 
                  v++vG   +GKS Ll++l 
  KIR62697.1 839 HVGVVGGPQSGKSGLLRALV 858
                 5899*************996 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.086
                  EEEEEEETTSEEEEEESTTSSHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran    3 nvslklkegekvaivGenGaGKStLlkllag 33  
                   v l++     + ++G+  +GKS++l++la 
  KIR62697.1 1113 PVVLDFATEPHLLVFGDAECGKSSFLRALAA 1143
                  566777888889999************9986 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.078        63      23      43 ..     489     509 ..     485     536 .. 0.85
   2 ?   -1.7   0.0       4.1   3.4e+03      20      43 ..     838     861 ..     829     871 .. 0.79
   3 !    9.7   0.0    0.0014       1.1      13      43 ..    1114    1145 ..    1110    1183 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.078
      AAA_23  23 lItGpNGaGKTTildAiklaL 43 
                 l++G +G+GK+ +l+ + l+L
  KIR62697.1 489 LLIGATGSGKSELLRTLVLGL 509
                 789**********99988877 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.1
      AAA_23  20 gltlItGpNGaGKTTildAiklaL 43 
                 g + ++G   +GK+ +l+A+  aL
  KIR62697.1 838 GHVGVVGGPQSGKSGLLRALVCAL 861
                 5566778888*********98665 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0014
      AAA_23   13 qeidF.skgltlItGpNGaGKTTildAiklaL 43  
                  + +dF   +  l++G+ ++GK+++l+A+    
  KIR62697.1 1114 VVLDFaTEPHLLVFGDAECGKSSFLRALAATI 1145
                  56899877899****************98765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0051       4.2       4      47 ..     487     541 ..     484     583 .. 0.84
   2 ?   -2.4   0.0         4   3.3e+03       5      23 ..     840     869 ..     839     889 .. 0.68
   3 ?    0.5   0.0      0.53   4.3e+02      99     129 ..     961     992 ..     956     999 .. 0.88
   4 ?    3.0   0.0     0.089        73       4      27 ..    1123    1145 ..    1120    1165 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0051
      AAA_24   4 kiliyGpsgiGKTtlakel...........gpkplfidtekGlksldadkfpdie 47 
                   l++G  g+GK+ l+++l           + +++++d+ +G+    +d++p   
  KIR62697.1 487 HGLLIGATGSGKSELLRTLvlglaathsseQLNFVLVDFKGGATFASFDRLPHTA 541
                 6799**********************9999999999*****99988888888665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4
      AAA_24   5 iliyGpsgiGKTtlakel...........g 23 
                 + ++G + +GK+ l++ l           +
  KIR62697.1 840 VGVVGGPQSGKSGLLRALvcalalthtpvE 869
                 5689********999887555555444444 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.53
      AAA_24  99 gdgkG.ygelaeefrrllkklqelrknvifia 129
                 ++++  y++l++ +++l ++  +++ +v+++a
  KIR62697.1 961 NTLRSeYDDLEPLVTELATRGLSYGVHVVATA 992
                 677888************************99 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.089
      AAA_24    4 kiliyGpsgiGKTtlakelgpkpl 27  
                   +l++G+++ GK+++++ l   ++
  KIR62697.1 1123 HLLVFGDAECGKSSFLRAL-AATI 1145
                  689*************998.4444 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0055       4.5      54      79 ..     486     511 ..     464     533 .. 0.77
   2 ?   -1.9   0.3       1.8   1.5e+03      50      77 ..     834     861 ..     829     865 .. 0.84
   3 ?    6.0   0.0    0.0073       5.9      55      85 ..    1123    1157 ..    1115    1170 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0055
      DUF815  54 nnvLLwGarGtGKSslvkallneyae 79 
                  + LL+Ga G+GKS l+++l+  +a+
  KIR62697.1 486 PHGLLIGATGSGKSELLRTLVLGLAA 511
                 5789************9998765544 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.8
      DUF815  50 glpannvLLwGarGtGKSslvkallney 77 
                 g +a +v ++G   +GKS l++al+ ++
  KIR62697.1 834 GGSAGHVGVVGGPQSGKSGLLRALVCAL 861
                 66788899999999*********98765 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0073
      DUF815   55 nvLLwGarGtGKSslvkallneyaeeg....Lrli 85  
                  ++L++G+  +GKSs ++al +++ ++      r+i
  KIR62697.1 1123 HLLVFGDAECGKSSFLRALAATIVSRFtpqqARVI 1157
                  899***************98876654433335555 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1         3   2.5e+03       3      19 ..     490     506 ..     489     509 .. 0.87
   2 ?    3.1   0.0      0.11        89       1      19 [.     840     858 ..     840     869 .. 0.88
   3 ?    9.1   0.0    0.0015       1.3       2      21 ..    1125    1144 ..    1124    1189 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3
                 EEEBTTTTHHHHHHHHH CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLl 19 
                 ++G++ sGKS +l  L+
  KIR62697.1 490 LIGATGSGKSELLRTLV 506
                 79********9998775 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
                 EEEEEBTTTTHHHHHHHHH CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLl 19 
                 + vvG   sGKS +l aL+
  KIR62697.1 840 VGVVGGPQSGKSGLLRALV 858
                 68***************98 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0015
                  EEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N    2 avvGsqSsGKSSvlnaLlge 21  
                  +v+G+   GKSS+l aL   
  KIR62697.1 1125 LVFGDAECGKSSFLRALAAT 1144
                  7***************9765 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00023      0.19      17      56 ..     487     530 ..     481     550 .. 0.77
   2 ?   -3.5   0.1       4.4   3.6e+03      16      36 ..     838     858 ..     836     861 .. 0.89
   3 ?   -0.9   0.0      0.75   6.1e+02      16      51 ..    1122    1161 ..    1117    1170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00023
  TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairarg....draivlDltGafv 56 
                    h l++G+tGsGK++ l+ l+ ++ a         + +D++G  +
     KIR62697.1 487 HGLLIGATGSGKSELLRTLVLGLAATHsseqLNFVLVDFKGGAT 530
                    889***************98777665433336789999998766 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.4
  TrwB_AAD_bind  16 qhilivGttGsGKtqalekll 36 
                     h+ +vG+  sGK+  l++l+
     KIR62697.1 838 GHVGVVGGPQSGKSGLLRALV 858
                    699*************99997 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.75
  TrwB_AAD_bind   16 qhilivGttGsGKtqalekllrairarg....draivlDl 51  
                      h+l++G +  GK+  l++l ++i +r      r+i +D 
     KIR62697.1 1122 PHLLVFGDAECGKSSFLRALAATIVSRFtpqqARVILVDY 1161
                     6999****************99998764333388888885 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1       0.1        85       3      24 ..     489     510 ..     488     529 .. 0.80
   2 ?   -0.3   0.0       1.5   1.2e+03       3      20 ..     841     858 ..     839     868 .. 0.88
   3 ?    6.1   0.0     0.016        13       2      38 ..    1124    1163 ..    1123    1175 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.1
                 EEESSTTSSHHHHHHCHCT-CC CS
         Roc   3 vlvGdsgvGKtsllkrfvedkf 24 
                 +l+G +g+GK+ ll+ +v +  
  KIR62697.1 489 LLIGATGSGKSELLRTLVLGLA 510
                 69*************9986554 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.5
                 EEESSTTSSHHHHHHCHC CS
         Roc   3 vlvGdsgvGKtsllkrfv 20 
                  +vG  ++GK+ ll+ +v
  KIR62697.1 841 GVVGGPQSGKSGLLRALV 858
                 689***********9886 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.016
                  EEEESSTTSSHHHHHHCHCT...-CCC-EEETTTTEEEEE CS
         Roc    2 vvlvGdsgvGKtsllkrfve...dkfsekekstigvdflt 38  
                  +++ Gd++ GK+s+l+ +     ++f++++   i vd+ +
  KIR62697.1 1124 LLVFGDAECGKSSFLRALAAtivSRFTPQQARVILVDYRR 1163
                  6789***********9987633367778888888777765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0         2   1.6e+03      69     111 ..     316     371 ..     299     373 .. 0.75
   2 ?    5.9   0.0     0.022        18       2      24 ..     489     520 ..     489     578 .. 0.71
   3 ?   -0.6   0.1       2.2   1.8e+03       1      19 [.     840     858 ..     840     879 .. 0.84
   4 ?    0.5   0.0      0.99   8.1e+02       2      21 ..    1125    1144 ..    1124    1173 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 2
      AAA_18  69 s........aleegknlvidghlaeleseaakdikk.....vvLtaspeelleRle 111
                 s        + + + ++v+dg       +   d++      v L+++p  ll+R +
  KIR62697.1 316 SrfspagpaTDGPHVVVVLDGGDLTGATDLVGDGGIdavtvVDLDTPPPRLLDRYA 371
                 4555566667788888899999988888888887778888999**********975 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.022
      AAA_18   2 lltGtpGvGKttlakeL.........skrlgf 24 
                 ll G+ G+GK++l + L         s+ l+f
  KIR62697.1 489 LLIGATGSGKSELLRTLvlglaathsSEQLNF 520
                 589************99666655554444444 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 2.2
      AAA_18   1 IlltGtpGvGKttlakeLs 19 
                 +++ G p +GK+ l ++L 
  KIR62697.1 840 VGVVGGPQSGKSGLLRALV 858
                 679999**********995 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.99
      AAA_18    2 lltGtpGvGKttlakeLskr 21  
                  l+ G + +GK+++ ++L+  
  KIR62697.1 1125 LVFGDAECGKSSFLRALAAT 1144
                  6889999**********875 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00059      0.48      22      59 ..     486     527 ..     473     536 .. 0.77
   2 ?   -3.5   0.0       3.5   2.8e+03     257     301 ..     598     641 ..     597     670 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00059
      DUF853  22 rhGliaGatGtGktvtLqvl....aeslseaGvpvfladvkG 59 
                  hGl+ GatG Gk   L++l    a + s+     +l+d kG
  KIR62697.1 486 PHGLLIGATGSGKSELLRTLvlglAATHSSEQLNFVLVDFKG 527
                 5**************999972222555566777777788887 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.5
      DUF853 257 PklvfffdeahLLfndapkallekveqvvrLirskGvGvyfvtqn 301
                 P l +  de   L+  a   +++   q+ rL rs Gv + + +q 
  KIR62697.1 598 PSLLLVCDEFSELLS-AKPDFIDLFVQIGRLGRSLGVHLLLASQR 641
                 667777777766665.5556999999***********99888885 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0018       1.5       3      25 ..     489     511 ..     488     544 .. 0.77
   2 ?   -2.5   0.0       4.2   3.4e+03      10      24 ..     848     862 ..     848     886 .. 0.81
   3 ?   -1.2   0.0       1.7   1.4e+03      10      20 ..    1132    1142 ..    1126    1155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0018
      AAA_21   3 vliGpNgsGKSnLLdaldllarl 25 
                 +liG+ gsGKS LL++l l   +
  KIR62697.1 489 LLIGATGSGKSELLRTLVLGLAA 511
                 69***************887654 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.2
      AAA_21  10 sGKSnLLdaldllar 24 
                 sGKS LL+al ++  
  KIR62697.1 848 SGKSGLLRALVCALA 862
                 9*********88754 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.7
      AAA_21   10 sGKSnLLdald 20  
                  +GKS++L+al 
  KIR62697.1 1132 CGKSSFLRALA 1142
                  7********94 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.14   1.1e+02      11      42 ..     476     507 ..     473     521 .. 0.81
   2 ?   -1.2   0.0         2   1.6e+03      24      54 ..     842     874 ..     833     901 .. 0.75
   3 ?    4.7   0.0      0.03        25      18      41 ..    1119    1142 ..    1114    1167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.14
    ATPase_2  11 leeilerepneiyfiYGpegsGKtaLlkeiie 42 
                 l+e ++ +  +  ++ G  gsGK+ Ll+ ++ 
  KIR62697.1 476 LKESAQDGMGPHGLLIGATGSGKSELLRTLVL 507
                 6677777777778889************9885 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2
    ATPase_2  24 fiYGpegsGKtaLlkeiienledkdk...yviyy 54 
                 ++ G  +sGK+ Ll+ ++  l   +      +y 
  KIR62697.1 842 VV-GGPQSGKSGLLRALVCALALTHTpveAQVYC 874
                 44.44479********998876555444455555 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.03
    ATPase_2   18 epneiyfiYGpegsGKtaLlkeii 41  
                   +++ ++++G   +GK+++l+ ++
  KIR62697.1 1119 ATEPHLLVFGDAECGKSSFLRALA 1142
                  5667789************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.85u 0.26s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 9196.93
//
Query:       KIR62698.1  [L=466]
Description: secretion protein snm4 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-23   82.7   2.1    7.7e-23   81.0   2.1    2.0  1  YukD      WXG100 protein secretion system (Wss), protein YukD


Domain annotation for each model (and alignments):
>> YukD  WXG100 protein secretion system (Wss), protein YukD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   2.1   4.3e-27   7.7e-23       2      76 .]       6      81 ..       5      81 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 4.3e-27
                EEEEEE-TTTEEEEEEETTSBTTHHHHHHHHHS-....--S---TT-EEEEGGGEEEETTSBCGGGT--TT-EEEE CS
        YukD  2 vrVtvlagnrrvDlaLPadvpvaellpalvrllg.epddeagrpggwsLarvggapLsgdrtLaeagVrDGdlLvL 76
                 rVt+ a++rrvD+aLP++vp+aellp+++r++g + +d+++r+ggw+L+r++ga+L+  + L  +gVrDG++L+L
  KIR62698.1  6 ARVTISAPQRRVDVALPEQVPLAELLPEVLRHAGeGLADDGERHGGWVLRRTDGAVLATAQALLPQGVRDGEVLHL 81
                7********************************99999************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 3431.53
//
Query:       KIR62699.1  [L=168]
Description: inorganic pyrophosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-51  174.4   0.0    1.7e-51  174.2   0.0    1.0  1  Pyrophosphatase  Inorganic pyrophosphatase
     0.0077   15.9   0.0      0.018   14.8   0.0    1.7  1  InPase           Inorganic Pyrophosphatase


Domain annotation for each model (and alignments):
>> Pyrophosphatase  Inorganic pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.2   0.0   1.9e-55   1.7e-51       1     159 [.       5     157 ..       5     158 .. 0.97

  Alignments for each domain:
  == domain 1  score: 174.2 bits;  conditional E-value: 1.9e-55
                      EEEEE-TTCSEEEEEETTTTEEEEEEE-SSSB-BSSEEEEETT--BTCCBEETSSSEEEEEESSS---TTEEEEEEEEEEEEEEETTEEEEEEE CS
  Pyrophosphatase   1 vvvEiprgsnaKyeidkeegklrldrvlftskgypanYGfipqTledtelkGDgDPlDvlvlgeeplspgevvevkvlGvlamiDegetDdKii 94 
                      v+vEip+g+++Kye+d+++g++rldr+lfts++ypa+YGfi+ Tl +     DgDPlD+lvl+ ep++pg++++++ +G+++m+De++ DdK++
       KIR62699.1   5 VTVEIPKGHRNKYEVDHATGRIRLDRTLFTSTQYPADYGFIEGTLGE-----DGDPLDALVLVPEPTFPGCLIRCRTIGMFRMTDEKGGDDKVL 93 
                      68*********************************************.....****************************************** PP

                      EEETTSGGGTT-SSGGGSTHHHHHHHHHHHHHTTTTSCCT-SEEEEEEEEHHHHHHHHHHHHHHH CS
  Pyrophosphatase  95 avpvkdprlkkindiedlpgllleeiehfFetykdlegkkknvkveewkdkeeAekvieeahery 159
                      +vp +dpr ++++di++l +  + ei+hfFe ykdle ++k+v+  +w ++ eAe++i+++ +r 
       KIR62699.1  94 CVPYEDPRQEHLRDIHHLGEFDRLEIQHFFEVYKDLE-PGKSVEGATWVGRVEAEAEIRASYRRA 157
                      *************************************.77999****************998875 PP

>> InPase  Inorganic Pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     2e-06     0.018      43      69 ..      34      60 ..       1      66 [. 0.63

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2e-06
      InPase 43 WssemkahYGyikgtkgaDgdhvDvfl 69
                 s++  a+YG i+gt g Dgd +D  +
  KIR62699.1 34 TSTQYPADYGFIEGTLGEDGDPLDALV 60
                3567789*****************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1352.62
//
Query:       KIR62700.1  [L=603]
Description: D-alanyl-D-alanine carboxypeptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-74  250.3   0.6    8.5e-46  156.6   0.3    2.1  2  Peptidase_S13    D-Ala-D-Ala carboxypeptidase 3 (S13) family
     0.0029   17.1   0.1     0.0065   15.9   0.0    1.5  2  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase
  ------ inclusion threshold ------
       0.03   13.9   0.7         14    5.2   0.2    3.0  3  Beta-lactamase2  Beta-lactamase enzyme family


Domain annotation for each model (and alignments):
>> Peptidase_S13  D-Ala-D-Ala carboxypeptidase 3 (S13) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0   4.1e-30   2.5e-26       2     164 ..     193     357 ..     192     376 .. 0.90
   2 !  156.6   0.3   1.4e-49   8.5e-46     228     442 ..     369     595 ..     361     597 .. 0.85

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 4.1e-30
                    HHHHHHHHTTGCGTTSEEEEEEEETTTTEEEEEESTTSEB--GGGHHHHHHHHHHHHT-TT-EEEEEEEESSEEETTEEESCEEEEECSBTTBBHH CS
  Peptidase_S13   2 aanldeiladpeLegavagvvvqdaetgkelydhqgdtpllPAStqKllTAaaAlltLganfrftTevvaegtvenrnlegnlvlvgsGDPtLsae 97 
                    +a+++ +la peL g+ + v v d++tg+ ly++ gd + +PAS  Kl+TA++ l + g+++r  T+ va+       + g++vlvg+GDPtL  +
     KIR62700.1 193 KAAIEPLLAAPEL-GDRVNVSVSDVTTGRSLYSRGGDDATVPASVTKLATAVTVLAARGPDHRVPTRAVAG------AAPGEVVLVGGGDPTLAVD 281
                    6789999******.9*******************************************************4......699**************99 PP

                    H.........HHHHHHHHHHTT-SEESS-EEEE-TTC-S-SS-TTSBGGGTTBGGG----SS-SGGGEEEEEEE-S CS
  Peptidase_S13  98 d.........ldalaeelkksGvtkiegelvvDdslfaserlapgwewaDltsgysapieaaiidagvvivevtpq 164
                              ld+lae+++k+   ++  ++ vD slf++++  pgw+ +  t g+ a i+a++ d  +v + ++++
     KIR62700.1 282 GdgfypgaarLDDLAEQVRKALGGTVPTRVTVDSSLFPGPVYGPGWDADIPTGGFGAAISALMTDGARVDPVAAKK 357
                    88******************96667777******************66666779*************999887773 PP

  == domain 2  score: 156.6 bits;  conditional E-value: 1.4e-49
                    -SSHHHHHHHHHHHHHHHTT-EE.........SS-EEEESS-TTSEEEEEEEECEHHHHHHHHHHHT-HHHHHHHHHHHHHHHCS-BSHHHHHHHH CS
  Peptidase_S13 228 vqdpaayagallkkkLkeqGitv.........sgevgiaeapesaevlashqSaPLsellkkmmkkSdNliAesllrevakeikrpgsfeagldav 314
                    + +p+  ag+ +++ L+  G            sg   ++ ap+ ++ l +++S+P++ l+  m+ +SdN+iAe+l r+va ++ +p+sf++g++a+
     KIR62700.1 369 SPQPDLAAGRAFARLLGLSGAAAevkrgtapaSGGESTGAAPAPGAELGKVESPPMIRLVDMMITDSDNVIAEALARQVALARDQPASFAGGAAAM 464
                    55667777777777777776533001111111233334556678899************************************************* PP

                    HHHHHHTT--CTTSB-S-SSS-STT-BBEHHHHHHHHHHHH..CTCCHHHHHHCS-BTTTSGGGTTSST.HCTTTTTTTEEEEEEEETTEEEEEEE CS
  Peptidase_S13 315 rerLskagidtanlvLeDgSGLSrknlvtaktlaqlLeaia..dqpalqalldsLPvAGesGtlenrfk.ltstpavGkvraKTGsLtgvssLaGy 407
                      +L ++g+  +++ L D SGLSr +++++  l +l+  +   ++p l ++   LPvAG sGtl +r +    t+ +G+vraKTG+Ltgv ++aG 
     KIR62700.1 465 DIVLGELGLPADEITLSDASGLSRSDRISPSLLTDLIAIAGdgSHPELGSIFGGLPVAGWSGTLDGRYRsDGTTAGAGVVRAKTGTLTGVHAIAGL 560
                    ************************************99998889*************************54556779******************* PP

                    EESTTSEEEEEEEEEESSSCCCTHHHHHHHHHHHH CS
  Peptidase_S13 408 vttasGeklaFsfllngldeedgknirdaldella 442
                    vtta+G+ l+F++l +   +    + r ald++++
     KIR62700.1 561 VTTADGRLLTFAVLADKAPAGSLDDTRRALDRVTS 595
                    ****************8777778888888888776 PP

>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.1e-06    0.0065      19      54 ..     214     249 ..     209     260 .. 0.91
   2 ?   -3.2   0.0      0.77   4.6e+03      97     117 ..     428     448 ..     426     493 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.1e-06
                    EETTTTEEEEEESTTS-BE-GGGHHHHHHHHHHHHH CS
  Peptidase_S11  19 vdantGkvLyeknadevveiASltKlmTaylvleal 54 
                     d +tG+ Ly++  d    +AS+tKl Ta+ vl a 
     KIR62700.1 214 SDVTTGRSLYSRGGDDATVPASVTKLATAVTVLAAR 249
                    699****************************99886 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.77
                    HHHHHCC--HHHHHHHHHHHH CS
  Peptidase_S11  97 legllvssgNdAavalAekia 117
                    +  ++ +s+N  a alA ++a
     KIR62700.1 428 VDMMITDSDNVIAEALARQVA 448
                    566777777777777777665 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.067     4e+02       3      31 ..     218     247 ..     216     262 .. 0.82
   2 ?    4.6   0.0    0.0036        21      70      92 ..     426     448 ..     414     474 .. 0.88
   3 ?    5.2   0.2    0.0023        14     173     201 ..     543     572 ..     517     573 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.067
                      TTSEE.EESTTS-EE-GGGGHHHHHHHHHH CS
  Beta-lactamase2   3 tgeel.gvnadeefpaaStiKvpillalle 31 
                      tg+ l + ++d+ +  aS+ K+  ++ +l+
       KIR62700.1 218 TGRSLySRGGDDATVPASVTKLATAVTVLA 247
                      555444999**************9977765 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0036
                      HHHHHHHHTT-HHHHHHHHHHHT CS
  Beta-lactamase2  70 dlltlmiavSDNtAtnlLidrlg 92 
                       l+ +mi++SDN+ + +L + + 
       KIR62700.1 426 RLVDMMITDSDNVIAEALARQVA 448
                      6999*********9999999886 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0023
                      EEEEEEEEETTEEEEEEEEEE.TTEEEEEE CS
  Beta-lactamase2 173 rvahKtGeldgvrhdvGivya.dgrpyvva 201
                      +v  KtG+l+gv+  +G+v++ dgr   +a
       KIR62700.1 543 VVRAKTGTLTGVHAIAGLVTTaDGRLLTFA 572
                      6778*****************888877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.37
# Mc/sec: 4846.78
//
Query:       KIR62701.1  [L=354]
Description: coenzyme F420 biosynthesis-associated protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.6e-112  374.3   0.5   6.3e-112  374.1   0.5    1.0  1  Zincin_2  Zincin-like metallopeptidase


Domain annotation for each model (and alignments):
>> Zincin_2  Zincin-like metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.1   0.5  3.5e-116  6.3e-112       1     332 []       5     341 ..       5     341 .. 0.94

  Alignments for each domain:
  == domain 1  score: 374.1 bits;  conditional E-value: 3.5e-116
                 --HHHHHHHHHHHHTGG.GS--S-HHHHHHHHHHHHHHHHHHHHHHHT---SS-.-EEEE--HHHHHHHHHHHHHHTTHHHHHHHH------------- CS
    Zincin_2   1 VdwdlaarvArrlarag.evdrseaaaavaelreaarlAelwldevtglpaaag.sevevvdraeWveatleswrrllepvaeklaealaeelaallrq 97 
                 Vdwdlaa++A  l ++g +v+ +ea+++v+elr+++++A+ +++++tgl+++   ++v+vvdr++W++++++++r++++p++++l+ ++  ++++l+++
  KIR62701.1   5 VDWDLAAATAGALGKSGpRVSYAEATEVVSELRRLTDEAAGHVADYTGLRSQVVhPPVRVVDRRDWAATNIAGLREVITPLVSRLSGDK--RPGPLTEA 101
                 9*************************************************999989******************************875..69****** PP

                 --HHHHHHHHHHHHHHHHTT--BTTSSH---.---EEEE-HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHHHHT---...- CS
    Zincin_2  98 vggavfgaqvGqalgeLssevlgqtdvglplapegrllLvapnvaaverelevdpedvrlwvalrEaaharlFaavpWLrehllsaveeyargitidts 196
                 vg++++g+q+G++l++Ls++vlgq++v+   +++g+llLvapn+++ver+l++dp+d+rlwv+l+E++h+++F+avpW+r+++l++v++++++ +  ++
  KIR62701.1 102 VGSRLTGVQAGTVLAYLSGRVLGQYEVF--SGDPGQLLLVAPNIVEVERKLGADPRDFRLWVCLHEVTHRTQFTAVPWMRAYFLGEVQAFVDASQGGEH 198
                 ****************************..999*************************************************************95544 PP

                 ----........---..............--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    Zincin_2 197 alle........leealrqealeg.....gllelvqtpeqraaldrLeallaLlEGwvdvVmdavgpevlpsvaalrerfrrrratggpaerllrrllG 282
                   le        l     ++a+++     ++l+ vqtp+qra+ldrL+al++LlEG+++ Vmd vgp+v+psv+++r++f+rrr+tg+p+e+++rrllG
  KIR62701.1 199 L-LErlrrgvatL-----SDAVKDpdsraSVLDIVQTPAQRAVLDRLTALMTLLEGHAEFVMDGVGPQVIPSVESIRAAFNRRRETGNPLEKAIRRLLG 291
                 4.44443343333.....344442344559********************************************************************* PP

                 -------SSHHHHHHHHHHHHH-HHHHGGGGS-GGGS--HHHHH-HHHHH CS
    Zincin_2 283 lelklrqyreaaalvravveavGmegrdavWehPdlLPtaeelddpaawv 332
                 +e+k+rqy+e+ ++v+ vve+vGmeg+++++ +P +LP  +el dp+awv
  KIR62701.1 292 VEVKMRQYAEGRKFVHGVVERVGMEGFNKIFGSPLTLPRLDELGDPDAWV 341
                 *************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2765.71
//
Query:       KIR62702.1  [L=346]
Description: tRNA(Ile)-lysidine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-42  144.3   0.0    4.8e-42  143.8   0.0    1.3  1  ATP_bind_3  PP-loop family
    3.4e-12   46.7   3.5    3.4e-12   46.7   3.5    2.9  3  TilS        TilS substrate binding domain
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.24   11.1   0.0    1.4  1  Ail_Lom     Enterobacterial Ail/Lom protein


Domain annotation for each model (and alignments):
>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.8   0.0     8e-46   4.8e-42       2     181 ..      28     207 ..      27     208 .. 0.97

  Alignments for each domain:
  == domain 1  score: 143.8 bits;  conditional E-value: 8e-46
                 EEEE--SCHHHHHHHHHHHHHCTTTTTEEEEEEEE-SSSTCHHHHHHHHHHHHHHTT.-EEEEEE--HHHCTTSTCCCHHHHHHHHHHHHCHHCCT.CE CS
  ATP_bind_3   2 vlvAvSgGlDSmaLllllaklkkklgiklvaihvdhglreeskeeaelvkelckkln.ikleiekvdvakkkgknleeaARelRYevlkealkkegiev 99 
                 vlvA SgG+DS+aL  ++a  + +lg  + +++vdh l++ s++ a+ v+++++  +  + e  +vdva +   + e+aARe+RY++l+ea++++g+  
  KIR62702.1  28 VLVACSGGADSLALAAAAAFVAPRLGRPVGLVTVDHALQAGSDRRAADVAAWAAGAGfAPAEAVRVDVAGR-PGGPEAAAREARYQALAEAARRHGAAA 125
                 79****************************************************9996789999***9764.7999*********************** PP

                 EE---BHHHHHHHHHHHHCCT--CCHHH-S-SEEEETTCCEE-CCCT--HHHHHHHHHHTT---B--CGGGCTTSHHHHHHH CS
  ATP_bind_3 100 lllAhhadDqaEtfllrlargsglaglagikeaseiasirlvRPlLkvskeeleeylkekkikwveDesNadekyeRnriRk 181
                 ll++h++dDqaEt+ll+larg+g++glag+++++ +a++ l+RPlL+v +e+ ++ +   +++  eD+ Nad +y R r+R+
  KIR62702.1 126 LLTGHTRDDQAETVLLALARGAGPRGLAGMPPRRDLAGVPLLRPLLDVGREQTRKACAALGLTPWEDPHNADPSYARARVRA 207
                 *********************************************************************************6 PP

>> TilS  TilS substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.7       0.4   2.4e+03      39      43 ..     111     115 ..      65     150 .. 0.62
   2 ?   -3.6   0.2       2.7   1.6e+04      35      42 ..     236     242 ..     225     247 .. 0.46
   3 !   46.7   3.5   5.7e-16   3.4e-12       2      66 ..     273     339 ..     272     340 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.4
                 HHHHH CS
        TilS  39 lrqll 43 
                  ++l+
  KIR62702.1 111 YQALA 115
                 33333 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.7
                 HHH.HHHH CS
        TilS  35 Leellrql 42 
                  ++ l++l
  KIR62702.1 236 AAA-LDEL 242
                 222.4444 PP

  == domain 3  score: 46.7 bits;  conditional E-value: 5.7e-16
                 -HHHHHHS-HHHHHHHHHHHHHHTT..TT--HHHHHHH.HHHHH.H-S-SEEEEE-ST..EEEEETTEE CS
        TilS   2 siaaLaaLsparqrrlLRrWLaqlg..lpmpsaahLeellrqlllaaedaqpqldlpg..evrRyrgrL 66 
                  +aaLa L pa + r+L++W ++lg  + ++s++h+e+ l++l+ +a+++q+ ++lpg  +v R+ grL
  KIR62702.1 273 VVAALAGLAPAVRTRVLHAWARELGasPAALSHRHVEA-LDALV-TAWHGQGDVHLPGglRVARRAGRL 339
                 689**********************8877*********.*****.************669999999998 PP

>> Ail_Lom  Enterobacterial Ail/Lom protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     4e-05      0.24     143     180 ..      62      99 ..      57     110 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4e-05
     Ail_Lom 143 evltrsddarrsntalaysagvqinptesvvvdlayea 180
                 ++  ++ + rr+    a++ag  + p+e+v vd+a   
  KIR62702.1  62 DHALQAGSDRRAADVAAWAAGAGFAPAEAVRVDVAGRP 99 
                 6666777889999999******************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 2208.31
//
Query:       KIR62703.1  [L=319]
Description: AraC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-22   80.2   2.7    1.8e-22   79.4   2.7    1.5  1  HTH_18     Helix-turn-helix domain
    1.5e-19   70.4   0.0      2e-19   70.0   0.0    1.1  1  DJ-1_PfpI  DJ-1/PfpI family
      2e-18   66.0   0.0    1.9e-09   37.4   0.0    2.3  2  HTH_AraC   Bacterial regulatory helix-turn-helix proteins, Ar
     0.0013   18.8   4.1     0.0097   16.0   0.3    2.9  3  DprA_WH    DprA winged helix domain
     0.0027   17.5   0.3      0.016   15.0   0.0    2.2  2  TetR_N     Bacterial regulatory proteins, tetR family
     0.0067   16.5   0.3      0.068   13.2   0.0    2.7  2  HTH_20     Helix-turn-helix domain
  ------ inclusion threshold ------
      0.066   13.2   0.0       0.32   11.0   0.0    2.1  2  HTH_Crp_2  Crp-like helix-turn-helix domain
       0.15   12.0   4.1       0.51   10.3   0.0    3.4  3  MarR_2     MarR family


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   2.7   8.2e-26   1.8e-22       1      80 [.     232     310 ..     232     311 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 8.2e-26
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 laa++g+++rt+ r+f++++g+tp+++l++ R+  ArrlL e+t lsv  +A ++GF+d+++++++f ++ g+tP +yr 
  KIR62703.1 232 LAARAGMTPRTFARRFRAETGTTPHDWLTNQRVLLARRLL-EETPLSVESVAGRSGFGDAAALRHHFARRVGTTPHAYRT 310
                 89************************************88.78***********************************96 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0   8.8e-23     2e-19       2     163 ..       4     169 ..       3     171 .. 0.90

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 8.8e-23
                 EEEEEEETTBEHHHHHHHHHHHHH.......TTEEEEEEESSTSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHT CS
   DJ-1_PfpI   2 kvlvlladgvedvElivpvdvlkr.......agikvdvvsvdkeevkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaek 93 
                 +v+v++ d+v   El v ++v+          g++ dv   d+ +v++s+G+ vt++a l  v+  + D++ +pG +      +++++v++ +++++ +
  KIR62703.1   4 SVAVVMMDQVVPFELGVFAEVFGTdrtddgfPGYRFDVCAADGAPVRTSSGFLVTPNADLTPVE--DADLVAVPGHDG----AVAPPEVLAALRRAHAR 96 
                 799*******************9667999999**************************999655..66*******888....666789*********** PP

                 T-EEEEETTTHHHHHHTTTTTTSEE--SGGGHHHH..HHTTSEE.-SSSEEEETTEEEESSGGGHHHHHHHHH CS
   DJ-1_PfpI  94 gklvaaICagpqlLaaagvlkgrrvTsypavkdkl..ekagaky.vdkrvvvdgnlvTsrgpgaaiefalell 163
                 g  v ++C+g+++L aag+l+ r +T+++ + d+l  + + a++  d+ +v dg+l+T +g  a i+ +l l+
  KIR62703.1  97 GAYVLSVCTGAFVLGAAGLLDDRECTTHWRHVDELqrRHPRARVrCDSLYVADGRLLTGAGTAAGIDACLHLV 169
                 ***********************************6644444442677****************999999887 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   8.6e-13   1.9e-09       4      42 .]     222     260 ..     220     260 .. 0.96
   2 !   26.5   0.0   2.3e-09   5.1e-06       6      42 .]     273     310 ..     271     310 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 8.6e-13
                 CCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   4 nlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 +l+++ t++++A+ +g+ +++F r+F++etG tP+ ++t
  KIR62703.1 222 HLDRPVTVDELAARAGMTPRTFARRFRAETGTTPHDWLT 260
                 78899********************************96 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 2.3e-09
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                  t+l++e++A   gf +   +++ F +++G tP++yrt
  KIR62703.1 273 ETPLSVESVAGRSGFgDAAALRHHFARRVGTTPHAYRT 310
                 799*********************************96 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         3   6.8e+03      26      34 ..     126     134 ..     125     134 .. 0.86
   2 !   16.0   0.3   4.3e-06    0.0097       2      42 ..     200     243 ..     199     246 .. 0.81
   3 ?    3.2   0.0     0.044     1e+02      19      40 ..     269     290 ..     249     295 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3
     DprA_WH  26 vhvDqLvrr 34 
                 +hvD+L rr
  KIR62703.1 126 RHVDELQRR 134
                 69****987 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 4.3e-06
     DprA_WH   2 pappaepplddlerrvLaaL.gp..ePvhvDqLvrrtglpaaev 42 
                 +ap + +p +++ + vLa L g+   Pv+vD+L++r+g+++++ 
  KIR62703.1 200 EAPIPKAPEAPTLEPVLAWLvGHldRPVTVDELAARAGMTPRTF 243
                 57888888899999999888644337**************9875 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.044
     DprA_WH  19 aaLgpePvhvDqLvrrtglpaa 40 
                  +L+ +P++v+ ++ r+g+  a
  KIR62703.1 269 RLLEETPLSVESVAGRSGFGDA 290
                 6899*************98655 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.3e-06     0.016      17      38 ..     227     248 ..     225     249 .. 0.94
   2 ?   -0.5   0.0      0.48   1.1e+03      17      36 ..     276     295 ..     266     300 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.3e-06
                 --HHHHHHHHTSSHHHHHHHTS CS
      TetR_N  17 ttvreIAkrAGvskgalYryFp 38 
                 +tv+e+A+rAG++++++ r+F+
  KIR62703.1 227 VTVDELAARAGMTPRTFARRFR 248
                 8********************7 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.48
                 --HHHHHHHHTSSHHHHHHH CS
      TetR_N  17 ttvreIAkrAGvskgalYry 36 
                 ++v+ +A r G + +a  r+
  KIR62703.1 276 LSVESVAGRSGFGDAAALRH 295
                 45888888888876654433 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0     3e-05     0.068      15      47 ..     215     249 ..     209     249 .. 0.90
   2 ?   -0.9   0.1       0.8   1.8e+03      18      45 ..     270     297 ..     265     299 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3e-05
                 HHHHH..STCTTB-HHHHHHHHTS-HHHHHHHHHH CS
      HTH_20  15 ilraL..araegltaselaerldlskntlsyHLrv 47 
                 +l++L  + ++++t+ ela+r ++++ t  +++r+
  KIR62703.1 215 VLAWLvgHLDRPVTVDELAARAGMTPRTFARRFRA 249
                 688888888*******************9999885 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.8
                 HHSTCTTB-HHHHHHHHT.S-HHHHHHHH CS
      HTH_20  18 aLaraegltaselaerld.lskntlsyHL 45 
                 +L ++ +l+++ +a r + ++ + l++H+
  KIR62703.1 270 LL-EETPLSVESVAGRSGfGDAAALRHHF 297
                 34.78899999999888778888899997 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00014      0.32      17      43 ..     222     248 ..     208     249 .. 0.86
   2 ?   -1.6   0.0       1.3   2.8e+03      24      35 ..     294     305 ..     266     313 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
                 EEEEEHHHHHHHHHTTSSHHHHHHHHH CS
   HTH_Crp_2  17 eielpltqeelAsmlGltretvsrils 43 
                 +++ p+t +elA++ G+t+ t+ r ++
  KIR62703.1 222 HLDRPVTVDELAARAGMTPRTFARRFR 248
                 56789*****************99775 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.3
                 HHHHHHHTTSSH CS
   HTH_Crp_2  24 qeelAsmlGltr 35 
                 +   A+++G+t+
  KIR62703.1 294 RHHFARRVGTTP 305
                 556677777776 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.6   5.7e+03      10      46 ..      86      94 ..      80      98 .. 0.59
   2 ?    1.0   0.4      0.18     4e+02      11      36 ..     166     190 ..     122     191 .. 0.66
   3 ?   10.3   0.0   0.00023      0.51      10      41 ..     215     246 ..     213     249 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.6
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHH CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLv 46
                vLaaL+r+                             
  KIR62703.1 86 VLAALRRA----------------------------H 94
                55555554............................4 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.18
                 HHHHHCTTTSEEEHHHHHHHHTSSHH CS
      MarR_2  11 LaaLgrrpgrdltvgelarrlglsks 36 
                 L+ ++++ g    ++ larr+ ++++
  KIR62703.1 166 LHLVRHEHG-SAIATRLARRMVVPPH 190
                 333334443.3577777777777665 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00023
                 HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHH CS
      MarR_2  10 vLaaLgrrpgrdltvgelarrlglsksavsri 41 
                 vLa+L  + +r++tv ela+r g+++ +  r+
  KIR62703.1 215 VLAWLVGHLDRPVTVDELAARAGMTPRTFARR 246
                 899999999999*************9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 1966.98
//
Query:       KIR62704.1  [L=190]
Description: hypoxanthine phosphoribosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-22   78.0   0.1    6.8e-22   77.7   0.1    1.0  1  Pribosyltran   Phosphoribosyl transferase domain
     0.0092   15.3   0.0      0.014   14.7   0.0    1.2  1  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.1   7.5e-26   6.8e-22      10     158 ..      20     169 ..      15     170 .. 0.91

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 7.5e-26
                   -EEEEEEETTEEEEEE.--GGGEEEEEEETTTHHHHHHHHHHS.....TT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSS CS
  Pribosyltran  10 aildavarlaaeilee.yngkpdvvvgiargGvpfakiladeL.....evplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtG 100
                   +i ++ a+la++ + + ++    ++v++++g+v+f  + a++L      v+l+++ +++y ++++++ +  + +   l +d+ag++V++V+Di+d+G
    KIR62704.1  20 QIREKTAELAKQVSADhADVDGLLLVCVLKGAVMFMADFARALgrqgpPVELDFMAISSYGQGTTSSGVVRILKD--LDRDIAGRHVVVVEDIVDSG 114
                   45668889999999996666666*************************99**********999988888777776..******************** PP

                   HHHHHHHHHHHCC-BSEEEEEEEEE-HHHHHHHHHH-TTS.....EEEEEEE-SEE-T CS
  Pribosyltran 101 gTllaalelLkekgpeevriavlvdkpateeevdknakrvfslspdnfvavvgfelds 158
                    Tl   l+ L+++ +++v++++l++kp+  + +   ++++f +     ++vvg++ld+
    KIR62704.1 115 LTLSWLLRYLESRSAASVEVVALFRKPEAIKVPVPVKYVGFDIP---TEFVVGYGLDF 169
                   ****************************************9888...99999999987 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.6e-06     0.014      17      58 ..      82     123 ..      73     140 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.6e-06
                    -HHHHHHHHHHHHCT---TT-EEEEE---TTTHHHHHHHHHC CS
  THF_DHG_CYH_C  17 pctpkgvvellketgielegkkvvvvGrsnivgkplallLle 58 
                      t+ gvv++lk+ + +++g++vvvv      g +l++lL  
     KIR62704.1  82 GTTSSGVVRILKDLDRDIAGRHVVVVEDIVDSGLTLSWLLRY 123
                    5799**********************9888888888888864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1338.01
//
Query:       KIR62705.1  [L=221]
Description: GTP cyclohydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-76  255.7   0.0      2e-76  255.4   0.0    1.1  1  GTP_cyclohydroI  GTP cyclohydrolase I


Domain annotation for each model (and alignments):
>> GTP_cyclohydroI  GTP cyclohydrolase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.4   0.0   1.1e-80     2e-76       1     178 [.      40     218 ..      40     219 .. 0.98

  Alignments for each domain:
  == domain 1  score: 255.4 bits;  conditional E-value: 1.1e-80
                      HHHHHHHHHHHTT--TTSTTTTTHHHHHHHHHHHHTGGGGS-G.GGGGSSEEETT--S-EEEEEEEEEEEETTT--EEEEEEEEEEE-..TTEE CS
  GTP_cyclohydroI   1 ieeavreiLealgedpereglketpkRvakayeelfkgleedpkekvlkkvfeeekdemvlvkdiefsSlCeHHllpfigkahvaYiP..kkkv 92 
                      ie+avreiL a+gedp+r+gl +tp+Rva+ay+elf+gl+ dp ++vl+++fe++++e+vlv+di+++SlCeHHllpf g+ah++YiP  ++++
       KIR62705.1  40 IEKAVREILIAVGEDPDRDGLVKTPARVARAYAELFAGLRVDP-AQVLSTTFEANHEELVLVRDIDVMSLCEHHLLPFRGSAHIGYIPgpDGRI 132
                      799****************************************.8******************************************8768*** PP

                      E-HHHHHHHHHHHHSSEE-HHHHHHHHHHHHHHHH--SEEEEEEEEEEHHHHSSTT--TT-EEEEEEEEEHHHH-HHHHHHHHHHH CS
  GTP_cyclohydroI  93 iGlSklaRivdvvarrlqvQErlteqiadaleevlkpkgvavvieaehlCmtmrgvkkkesktvtsalrGefkedaalreefleli 178
                      +GlSklaR+v+v+arr+qvQErlt+qiad l+++l+p+gv+vv+e+eh+Cm+mrg++k+++kt+tsa+rG++++da+ r+e ++li
       KIR62705.1 133 TGLSKLARLVEVFARRPQVQERLTSQIADLLMSSLAPRGVVVVLECEHMCMAMRGIQKSGAKTITSAVRGVLQHDAKSRAEAMALI 218
                      ***********************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1710.80
//
Query:       KIR62706.1  [L=187]
Description: hypothetical protein TK50_17145 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1375.05
//
Query:       KIR62707.1  [L=199]
Description: hypothetical protein TK50_17150 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1485.99
//
Query:       KIR62708.1  [L=383]
Description: peptidase M23 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-21   76.6   0.3    3.5e-21   75.2   0.0    1.9  2  Peptidase_M23  Peptidase family M23


Domain annotation for each model (and alignments):
>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1      0.61   1.1e+04      17      30 ..     220     233 ..     211     240 .. 0.74
   2 !   75.2   0.0   1.9e-25   3.5e-21       2      92 ..     251     359 ..     250     368 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.61
                    EESSSEEEEEEEEE CS
  Peptidase_M23  17 lAaadGtVvfagkk 30 
                     Aa+ G++  +g++
     KIR62708.1 220 NAASRGQIAASGWT 233
                    58889999999885 PP

  == domain 2  score: 75.2 bits;  conditional E-value: 1.9e-25
                    EESSEEEEETTT-EEEESSSEEEEEEEEET.................TTEEEEEEEECTCEEEEEEEESE.ESS-TTEEE-TTCEEEEEBSTSSCS CS
  Peptidase_M23   2 fhkGidiaapkgtpVlAaadGtVvfagkke.................gyGnvviidhgdgystlyahlsk.isvkegqkVkaGqvIGtvgstgrst 79 
                     h+G+diaapk t ++ aa+G+V+ a+ +                  g+G++v + h++gy+t+y+h+    +v +gq VkaG+vIG+vgs+g+s+
     KIR62708.1 251 RHNGVDIAAPKRTLIRVAATGRVLVARCDPanngqlscdvdgypgkgGCGWFVDVLHAGGYVTRYCHMIVkPRVVPGQLVKAGEVIGEVGSSGNSS 346
                    59*********************8777744567899**********888******************876255*********************** PP

                    SSEEEEEEEETTE CS
  Peptidase_M23  80 gphLhfeirkngk 92 
                    gphLhfe++ +g+
     KIR62708.1 347 GPHLHFEVHLDGD 359
                    ********98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2739.24
//
Query:       KIR62709.1  [L=182]
Description: hypothetical protein TK50_17160 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1363.93
//
Query:       KIR62710.1  [L=650]
Description: hypothetical protein TK50_17165 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        4.6    7.1   8.6        7.1    6.5   0.1    3.0  3  Wzy_C_2   Virulence factor membrane-bound polymerase, C-termi
        7.8    7.1  11.6       0.27   11.8   0.7    2.7  3  PRRSV_2b  Porcine reproductive and respiratory syndrome virus


Domain annotation for each model (and alignments):
>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   2.1    0.0078        69      23      66 ..     189     233 ..     187     243 .. 0.74
   2 ?   -1.7   0.1      0.25   2.3e+03      28      69 ..     419     459 ..     406     467 .. 0.62
   3 ?    6.5   0.1   0.00079       7.1      49     122 ..     468     535 ..     442     546 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0078
     Wzy_C_2  23 spfllaaflvl..glldsksrsrrlrlrpklvlrvvalvlallgla 66 
                 s f +++++v+  +ll++ sr+  ++ +++++ +++ +++a+++la
  KIR62710.1 189 SVFGIITLCVVglYLLWR-SRQSDMSNAMTTAGWALLVMVAVTALA 233
                 678889999987678888.888888888777777776666666655 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.25
     Wzy_C_2  28 aaflvlglldsksrsrrlrlrpklvlrvvalvlallglalll 69 
                 +++  +gl+ + + +   rl+ ++v+ v+ ++++ +g+a++l
  KIR62710.1 419 PILGTIGLMRP-ASAGLRRLANAVVAAVFNIAIFGTGAAIYL 459
                 44455677777.555555555666666666666666666555 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.00079
     Wzy_C_2  49 pklvlrvvalvlallglalllsilhdyqrleqlyltsepneaalrevtnpkvwkdrflfrayadllelgllpls 122
                 +++++ ++++vl+ l  ++   +l+ y+r++ql  + +++     +v++++ w +  +fr++ + ++l ++++ 
  KIR62710.1 468 TATLAGWLQVVLVWLCGVVGWLLLRPYRRITQLGGKDSSE-----AVSSAGSWHR-RFFRDMRTAARLDVAEPG 535
                 5667888999999999999999**********98776665.....6777778998.999***999999988765 PP

>> PRRSV_2b  Porcine reproductive and respiratory syndrome virus 2b
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1         2   1.8e+04      39      49 ..     216     226 ..     215     233 .. 0.67
   2 ?   11.8   0.7     3e-05      0.27       8      48 ..     377     417 ..     370     432 .. 0.89
   3 ?    2.1   0.9      0.03   2.7e+02      35      52 ..     465     482 ..     443     500 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2
    PRRSV_2b  39 ftiagwlvvfc 49 
                 +t agw ++  
  KIR62710.1 216 MTTAGWALLVM 226
                 58899965544 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3e-05
    PRRSV_2b   8 fdkigqlfvdafteflvsivdiiiflaillgftiagwlvvf 48 
                 +d++g  f+  ++ +l ++ d+   l +llgf i  w v+ 
  KIR62710.1 377 MDRVGSGFIAVLAALLFAMFDLTASLLVLLGFLIFRWAVIA 417
                 699**********************************9985 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.03
    PRRSV_2b  35 illgftiagwlvvfcikl 52 
                 i+   t+agwl v  + l
  KIR62710.1 465 IMSTATLAGWLQVVLVWL 482
                 4556799****9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1082  (0.0603492); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 4269.30
//
Query:       KIR62711.1  [L=1158]
Description: hypothetical protein TK50_17170 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-27   97.0   0.0    5.7e-26   91.3   0.0    2.1  1  AAA_10     AAA-like domain
  ------ inclusion threshold ------
      0.022   13.7   0.2       0.13   11.2   0.1    2.0  2  MeaB       Methylmalonyl Co-A mutase-associated GTPase MeaB
      0.032   14.0   0.0      0.067   12.9   0.0    1.5  1  AAA_30     AAA domain
       0.15   11.8   0.0        1.6    8.4   0.0    2.1  2  IstB_IS21  IstB-like ATP binding protein
       0.17   12.0   0.0       0.29   11.2   0.0    1.5  1  CbiA       CobQ/CobB/MinD/ParA nucleotide binding domain


Domain annotation for each model (and alignments):
>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.0   1.6e-29   5.7e-26      18     354 ..     759    1127 ..     746    1134 .. 0.81

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 1.6e-29
      AAA_10   18 ktnasasliiGdlGnGKSvlakllvlyisllggkaliiDpkkerekfketlpeiakkinvvtLdseeenegvLdPlvllk.............eeke 101 
                  ++++  ++++ ++G+GKS l   l + ++ +g ++ ++Dp     +    +pe+    +v++L+    ++g+L P+ l++             +   
  KIR62711.1  759 RERSGLAVFVAEPGGGKSTLLGALGYLAARRGVQVTLLDPSGPLAR-LCSMPELRPYSRVLNLT--GSEQGTLAPYALIPtplrsefsagaagD--- 849 
                  456777899*********************************9544.44679999999******..7777*********955533222222220... PP

      AAA_10  102 aeslaedilel....................llgvkkkesekkaalseaveavlegkqrgllavieelrkedekvareiarhlesvvkkslaklvfs 178 
                          +e+                    +     +e    ++ ++av++v  +++  l +v+  l + d+ +++e+a++l  +++  la l f+
  KIR62711.1  850 ------REFEIavsnaraerrmlvqdicmmlVPPQVAREASTATLFRHAVRQVPAEETSTLDDVVACLGQLDDDAGKELANLLLDTAEMPLAMLFFG 940 
                  ......1222233334555555533444332222336677777789999************************************************ PP

      AAA_10  179 dgsveeaislekkvtvlevedLdLPdkderlerlteekllsvavlfviaafarefass.dkkefkvvifDEawiftssaeGkkllkelvRiGRsyna 274 
                      e+ +  ++ +tv+ +++L LPd +   e    e+ l++ +l  +  +a       + +  k v +DEa  ++    G+  l  l R+ R+ n 
  KIR62711.1  941 RPP-EGLLGADAALTVITMAGLRLPDLKIEREYWSAEEALALPMLHTAHRLAVRRCYGgSMSSRKLVGLDEAHFMEGWRSGRSFLVRLARDSRKWNL 1036
                  **7.999*******************9999999******************98875554999999******************************** PP

      AAA_10  275 avylvtqsadDvlkeelknniglklaFretdkeei.kkvLeflgldveded........nkke..lrelesGqCLmkDllgrvgkikidvl 354 
                  a++ ++q++ D+l  + +n+++++++ r  +  ei  + L++l ++v+d                   l   +  m+D+ grv+k+ +dv 
  KIR62711.1 1037 AALVASQNPRDILGLDVQNLVSTVFVGRIAEDTEIaSEALRLLRVPVNDGYeatlaslsTADAtsATRLGFREFVMRDVDGRVQKVRVDVS 1127
                  ****************************77666652789*********988444444431223224444445899**************96 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.13   4.6e+02     220     250 ..     462     492 ..     446     498 .. 0.86
   2 ?   11.2   0.1   3.6e-05      0.13      36      70 ..     769     801 ..     756     804 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH CS
        MeaB 220 elvdaieehrevlkktGllekrrrerakeel 250
                 +l  ++e++ evl + G++ +r  +++ e+l
  KIR62711.1 462 KLGRTVEQFDEVLGAFGMRGRRVTAQELEWL 492
                 57789**********************9997 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 3.6e-05
                 E-TTSSHHHHHHHHHHHHHCTT--EEEEEE----- CS
        MeaB  36 GvPGaGkstlvealglelrrrGkrvavlavDPssp 70 
                   PG Gkstl+ alg   +rrG +v++l  DPs p
  KIR62711.1 769 AEPGGGKSTLLGALGYLAARRGVQVTLL--DPSGP 801
                 57********************999875..88876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.9e-05     0.067      18      60 ..     762     804 ..     756     812 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.9e-05
      AAA_30  18 drvavltGpAGtGKttalkalreaweaaggrviglAptgkaAk 60 
                   +av ++ +G GK+t+l+al  +++++g +v +l p+g  A+
  KIR62711.1 762 SGLAVFVAEPGGGKSTLLGALGYLAARRGVQVTLLDPSGPLAR 804
                 45899******************************99997775 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.12   4.4e+02      88     132 ..     610     655 ..     604     661 .. 0.84
   2 ?    8.4   0.0   0.00046       1.6      50      79 ..     765     794 ..     755     800 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.12
   IstB_IS21  88 eelkrarrdgklaralkrllkvdllilDdlgl.lpldqaeaellfe 132
                 ++l  a++   +  +l+rl+k +l+i D++ + lp+d+a a+   +
  KIR62711.1 610 QQLDYAEHGIDAPPELERLAKRALVIGDEMTTgLPVDSARAHGWHR 655
                 678888888889999**************98757999998887655 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00046
   IstB_IS21  50 ivllGpsGvGKshlaialgveavraglsvl 79 
                  v++  +G GKs l  alg+ a+r+g++v+
  KIR62711.1 765 AVFVAEPGGGKSTLLGALGYLAARRGVQVT 794
                 467899*********************996 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.2e-05      0.29       9      43 ..     772     804 ..     765    1104 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.2e-05
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannla 43 
                 G GK+tl+ +L+ + arrg +V l+D  p +++++
  KIR62711.1 772 GGGKSTLLGALGYLAARRGVQVTLLD--PSGPLAR 804
                 67**********************99..5555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.47
# Mc/sec: 7471.02
//
Query:       KIR62712.1  [L=120]
Description: hypothetical protein TK50_17175 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 807.87
//
Query:       KIR62713.1  [L=104]
Description: hypothetical protein TK50_17180 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 701.45
//
Query:       KIR62714.1  [L=306]
Description: dihydropteroate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-85  285.9   0.1    3.1e-85  285.7   0.1    1.0  1  Pterin_bind  Pterin binding enzyme


Domain annotation for each model (and alignments):
>> Pterin_bind  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.7   0.1   1.7e-89   3.1e-85       1     244 []      13     258 ..      13     258 .. 0.98

  Alignments for each domain:
  == domain 1  score: 285.7 bits;  conditional E-value: 1.7e-89
                  EEEEETTTTTCHCCHHCTHHHHHHHHHHHHHHTT-SEEEEESS-TSTT--CCHHHHHHHHHHHHHHHHHHHCTSEEEEE-S-HHHHHHHHHTTSEEEE CS
  Pterin_bind   1 mgilNvtpdsfsdggkfedldkalaqarkmveeGAdilDiggestrPgaervdeeeelervvpvlealrdeadvpisiDttkaevaeaAlkagadivN 98 
                  mg+lNvtpdsfsdgg++ dld+a+a+  ++ eeGA+++D+ggestrPga+rvd+++e +rv+pv+++l+++ +v +siDt++a+vaeaAl+aga++vN
   KIR62714.1  13 MGVLNVTPDSFSDGGRYADLDAAVAHGVRLKEEGAHLVDVGGESTRPGADRVDAATEAARVLPVVRELAAT-GVAVSIDTSRARVAEAALAAGAAVVN 109
                  9********************************************************************99.9************************* PP

                  ETTTTSSSTTHHHHHHHHT-EEEEESECSSTTTHCCCCCCCSSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHHHHHTT CS
  Pterin_bind  99 dvsgeerdpkmlelvaeagaavvvmhmrgtpktmqeeegqyedvveeveaflearveaaeeaGvaperillDpgigfgkteehnlellrrldelreal 196
                  dvsg+ +dp+m+++v++ag+++v+mh+rg+++ m++ + +y+dvv++v+a+l +rv+aa +aGv ++ri++Dpg+gf+kt+ehn++l +rl+el  +l
   KIR62714.1 110 DVSGGLADPDMARVVRDAGCPWVLMHWRGHSRGMSALA-HYTDVVTDVRAELAERVDAALAAGVTADRIVIDPGLGFAKTAEHNWQLTARLPEL-LEL 205
                  **************************************.*******************************************************.*** PP

                  SSEBEEEGTTGHHHHHHH.CTTC....HGHHHHHHHHHHHHHHHTT-SEEEES CS
  Pterin_bind 197 evpvllGvSrksflgrll.elgk....aeeRdagtaaflalaaaaGadivrVh 244
                  ++p+l G+Srks lgrll ++++    ++ R+++taa+++la+aaGa+ vrVh
   KIR62714.1 206 GLPLLFGASRKSYLGRLLaAADGtprpTAGRETATAATSLLAVAAGAWGVRVH 258
                  *****************96444489*999***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2175.66
//
Query:       KIR62715.1  [L=175]
Description: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-32  112.8   0.0    1.4e-32  112.5   0.0    1.1  1  HPPK      7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase


Domain annotation for each model (and alignments):
>> HPPK  7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5   0.0   7.9e-37   1.4e-32       2     112 .]       6     137 ..       5     137 .. 0.94

  Alignments for each domain:
  == domain 1  score: 112.5 bits;  conditional E-value: 7.9e-37
                 EEEEE-SSSHHHHHHHHHHHHHHEEEEE---EEE--S...SS-GEEEEEEEEEE.SS-HHHHHHHHHHHHHHTT--C....STS-BS-EEEEEEET... CS
        HPPK   2 lalGsNlgdreanleealealeekvvkvSslyetepv...dqpdFlNavvevet.elspeellealkeiEkelgrer....rwgpRtlDlDillyg... 89 
                 l+lGsNlgdr+a+l++a++ l e+v+ vS +yet+p+   dqp++lNavv ve  +++p+++l++ ++ E+++grer    r+gpRtlD+D++++    
  KIR62715.1   6 LSLGSNLGDRAAHLRSAVDCLGEAVLLVSGVYETPPWgdaDQPAYLNAVVLVEDpAAAPRDWLARARAAERRAGRERdparRFGPRTLDVDVVAVWdda 104
                 89*******************99999***********98779**********985789*****************9655546***********9777** PP

                 ..........EEES-TTGGG-HHHHHHHHHHCT CS
        HPPK  90 ..........ltlPhprlaeraFvlvplaelap 112
                           ltlPhpr++ raFvl+p+++++p
  KIR62715.1 105 gepvvsddpeLTLPHPRAHLRAFVLRPWIDIQP 137
                 ******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      143  (0.0079759); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1396.15
//
Query:       KIR62716.1  [L=405]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        2.3    7.5   6.6       0.26   10.6   0.1    2.2  2  Glucos_trans_II  Glucosyl transferase GtrII


Domain annotation for each model (and alignments):
>> Glucos_trans_II  Glucosyl transferase GtrII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   1.4e-05      0.26     106     206 ..      49     161 ..      44     219 .. 0.77
   2 ?   -2.1   2.8      0.11     2e+03     105     173 ..     238     318 ..     229     338 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 1.4e-05
  Glucos_trans_II 106 alalllavlaayllv......kknkllkll.....vsalllaislgiYQaylnvyia.lllilllrdlldekkklkeilkkllllllvliisfv 187
                       la +lavl  +l++      + + l++ll     +++l la++l++  +++n+++  ++++ +l + +++++  +  l +++ +++v+ ++++
       KIR62716.1  49 LLAAALAVLTWLLWQaepaalRDDGLRSLLvdvvaLGLLVLAAGLTLRTSAVNLAVGpVAVAAALHVAEQGDRGVEVALGHAVAVAAVGGLAVG 142
                      566666666666666999999888888888999889999******************************************************* PP

  Glucos_trans_II 188 lylllykiilklfglelsy 206
                      l+++l+++  ++  l  + 
       KIR62716.1 143 LAVVLLHVPGWAASLAGAA 161
                      ******9966665555544 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.11
  Glucos_trans_II 105 malalllavlaayllv..........kknkllkllvsalll..aislgiYQaylnvyialllilllrdlldekkklkeilk 173
                      ++l+ ++a+la +l+           ++  +++l+v+++ll  + ++g   a ++  +a++l+++lr++ld ++ + +++ 
       KIR62716.1 238 FVLSTVFAALAGILFAsngdgpvvptEGLGWTTLAVGIALLggTSAYGRRGAIFGTLLAVSLVVVLRAWLDAEGWIVSRWA 318
                      444555555555544455555555544445555554444432233333334555555555556666666555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2806.90
//
Query:       KIR62717.1  [L=102]
Description: hypothetical protein TK50_17210 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 687.88
//
Query:       KIR62718.1  [L=172]
Description: hypothetical protein TK50_17215 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1253.54
//
Query:       KIR62719.1  [L=337]
Description: glycine/betaine ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-32  112.8   0.0    2.8e-32  112.1   0.0    1.3  1  ABC_tran      ABC transporter
    1.4e-08   35.0   0.1     0.0034   17.2   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
      9e-07   29.4   0.1    2.9e-06   27.8   0.0    1.8  1  AAA_16        AAA ATPase domain
     0.0024   17.4   0.0      0.016   14.8   0.0    2.1  2  AAA_25        AAA domain
     0.0026   17.5   0.0     0.0045   16.7   0.0    1.5  1  AAA_30        AAA domain
     0.0027   17.6   0.0     0.0062   16.4   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
     0.0032   17.4   0.0     0.0051   16.8   0.0    1.2  1  Rad17         Rad17 P-loop domain
     0.0035   17.3   0.0     0.0069   16.4   0.0    1.5  1  AAA_5         AAA domain (dynein-related subfamily)
     0.0037   17.7   0.0      0.039   14.4   0.0    2.1  1  AAA           ATPase family associated with various cellular 
      0.004   17.4   0.0     0.0089   16.3   0.0    1.5  1  AAA_22        AAA domain
     0.0056   16.4   0.0      0.013   15.2   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
     0.0063   16.3   0.0     0.0089   15.8   0.0    1.1  1  AAA_15        AAA ATPase domain
  ------ inclusion threshold ------
      0.013   15.7   0.1      0.029   14.5   0.1    1.8  1  AAA_33        AAA domain
      0.051   13.8   0.6       0.18   12.1   0.0    2.2  3  AAA_28        AAA domain
      0.088   13.4   0.0       0.18   12.3   0.0    1.5  1  AAA_18        AAA domain
       0.11   13.0   0.0       0.16   12.4   0.0    1.2  1  AAA_23        AAA domain
       0.13   11.7   0.0        0.2   11.0   0.0    1.3  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.13   12.1   0.0       0.31   10.9   0.0    1.6  1  NACHT         NACHT domain
       0.16   10.8   0.0       0.23   10.2   0.0    1.2  1  Adeno_IVa2    Adenovirus IVa2 protein
       0.17   12.3   0.0       0.27   11.7   0.0    1.3  1  RNA_helicase  RNA helicase
       0.17   11.1   0.0       0.29   10.4   0.0    1.3  1  Zeta_toxin    Zeta toxin
       0.18   10.9   0.0       0.25   10.4   0.0    1.1  1  G-alpha       G-protein alpha subunit
        0.2   11.1   0.0          4    6.8   0.0    2.0  2  SMC_N         RecF/RecN/SMC N terminal domain
       0.22   11.2   0.1       0.85    9.3   0.0    1.8  2  AAA_24        AAA domain
       0.25   11.1   0.0       0.38   10.5   0.0    1.3  1  PRK           Phosphoribulokinase / Uridine kinase family


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.0   3.9e-35   2.8e-32       2     136 ..      40     185 ..      39     186 .. 0.95

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 3.9e-35
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 +++sl + +ge+v+++G++G+GKSt+l+++ +l +pt+G+ill ++d+++ +   lr++ig++ q+  lfp+ tv  n               +++ e+
  KIR62719.1  40 RELSLRVPAGELVVLIGPSGCGKSTVLRMINRLIEPTAGRILLGDEDVTRVDPVALRRRIGYVIQNVGLFPHQTVVANvgtvprllgwprdRIRRRSEE 138
                 5799**********************************************************************99999********988888888999 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +l+ +gl+    +  ++ p++LSgGq+qrv +aral+ +p +ll+DEp+
  KIR62719.1 139 LLELVGLDP--GRFGRRYPHELSGGQRQRVGVARALAADPVVLLMDEPF 185
                 999999988..88888889*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.4e-05    0.0098       1      22 [.      51      72 ..      51      99 .. 0.84
   2 !   17.2   0.0   4.8e-06    0.0034     219     298 ..     136     217 ..     115     220 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.4e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                l vliGp g+GKS++L+ +  l
  KIR62719.1 51 LVVLIGPSGCGKSTVLRMINRL 72
                579***************9888 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 4.8e-06
      AAA_21 219 r....gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHP....kllrrllellkelsrngaQviltTHS 298
                 +     +v l++g+ + + ++elS G+++  +++ al++++    +ll DEp +  +P    +l++++l+l  e ++    ++l+TH+
  KIR62719.1 136 SeellELVGLDPGRFGRRYPHELSGGQRQRVGVARALAADP---VVLLMDEPFSAVDPivrtRLQEEFLRLQAEVRK---TIVLVTHD 217
                 1334578889999999**************9*******999...69************6666666666666566655...*******8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   4.1e-09   2.9e-06      18     145 ..      45     219 ..      36     227 .. 0.60

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 4.1e-09
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql.......esaipysa.laqalareellrqlldeaesaeleaw..rekleeala 106
                 rv +g  elv+l+G+sG+GKs+++r++ r +e + g  l g+ d         ++ i y++  + ++   ++++ +++ ++   ++++  r++ ee l+
  KIR62719.1  45 RVPAG--ELVVLIGPSGCGKSTVLRMINRLIEPTAGRILLGDEDVTrvdpvalRRRIGYVIqNVGLFPHQTVVANVGTVPRLLGWPRDriRRRSEELLE 141
                 56556..89********************9999988889888888833333333335555546666666666666666644333333300333333333 PP

      AAA_16 107 ..........................................avpelagaeasrllellkrllallsrderplvlvlDdlq 145
                                                           + +++++  ++rl e++ rl   ++  ++++vlv  dl+
  KIR62719.1 142 lvgldpgrfgrryphelsggqrqrvgvaralaadpvvllmdePFSAVDPIVRTRLQEEFLRLQ--AEV-RKTIVLVTHDLD 219
                 666777777777666666666666666665555555555555555555555566666666655..222.334666666666 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.2e-05     0.016      30      50 ..      46      66 ..      33      79 .. 0.91
   2 ?   -0.7   0.0       1.3     9e+02     166     188 ..     194     216 ..     175     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.2e-05
      AAA_25 30 lpagelallaGapgtGKttla 50
                +pagel++l+G++g+GK+t++
  KIR62719.1 46 VPAGELVVLIGPSGCGKSTVL 66
                69*****************86 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.3
      AAA_25 166 galvealeriarrtgaavllvhH 188
                 ++l e + r++++ + +++lv H
  KIR62719.1 194 TRLQEEFLRLQAEVRKTIVLVTH 216
                 78899999999999999999999 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.3e-06    0.0045      19      63 ..      50     104 ..      37     214 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.3e-06
      AAA_30  19 rvavltGpAGtGKttalkalreaweaa.g.........grviglAptgkaAkvLa 63 
                  ++vl Gp G GK+t+l+ +++++e   g          rv  +A   +   v++
  KIR62719.1  50 ELVVLIGPSGCGKSTVLRMINRLIEPTaGrillgdedvTRVDPVALRRRIGYVIQ 104
                 489**********************995566666666666666666666655555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.7e-06    0.0062      92     120 ..      41      70 ..      29      85 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.7e-06
                  HHHHHCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  92 elkellkd.ktsvlvGqSGvGKStLinall 120
                  el+ ++   +++vl+G+SG GKSt++ +++
   KIR62719.1  41 ELSLRVPAgELVVLIGPSGCGKSTVLRMIN 70 
                  55544444499*************987765 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     7e-06    0.0051      45      67 ..      49      71 ..      34      79 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7e-06
       Rad17 45 kriLLisGPsGCgkstvvkvLsk 67
                 +++++ GPsGCgkstv++++ +
  KIR62719.1 49 GELVVLIGPSGCGKSTVLRMINR 71
                4588999***********99876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   9.6e-06    0.0069       2      38 ..      52      89 ..      51     102 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 9.6e-06
                EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--H CS
       AAA_5  2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtte 38
                v+L+Gp+G+gKs++ + + +++  +   + ++ +d t+
  KIR62719.1 52 VVLIGPSGCGKSTVLRMINRLIePTAGRILLGDEDVTR 89
                79*******************98777777777777765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   5.4e-05     0.039       1     109 [.      52     215 ..      52     236 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.4e-05
                 EEEESSTTSSHHHHHHHHHHHHTHE....................EEEEETTTCSSS.......................................... CS
         AAA   1 vllyGppGtGKTllakavakelgve....................fleisgsellsk.......................................... 37 
                 v+l+Gp G+GK+++ + + + ++ +                                                                          
  KIR62719.1  52 VVLIGPSGCGKSTVLRMINRLIEPTagrillgdedvtrvdpvalrR----------Rigyviqnvglfphqtvvanvgtvprllgwprdrirrrseell 140
                 689**************99997433223333333433333333330..........2444444455555555666666666666666666666666666 PP

                 .............STTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEE CS
         AAA  38 .............yvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigat 109
                              y  e +   r+ +  a++ a +p++l++DE  + +         +++r+++++l+   +v+k     +++++t
  KIR62719.1 141 elvgldpgrfgrrYPHELSGGQRQRVGVARALAaDPVVLLMDEPFSAVDPI------VRTRLQEEFLRLQAEVRK-----TIVLVT 215
                 666666666666699999999999999999988888999999954444444......455577777777666666.....344444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.2e-05    0.0089       7      29 ..      51      73 ..      48     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.2e-05
      AAA_22  7 ilvvtGesGtGKTtllrrlleql 29
                ++v++G+sG+GK+t+lr++ +  
  KIR62719.1 51 LVVLIGPSGCGKSTVLRMINRLI 73
                689**************998765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.8e-05     0.013      22      48 ..      48      75 ..      38      80 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.8e-05
      AAA_29 22 kg.atlltGpsGsGKSTllDAiqalLvp 48
                +g  ++l+GpsG GKST+l  i+ l+ p
  KIR62719.1 48 AGeLVVLIGPSGCGKSTVLRMINRLIEP 75
                444899************9777777666 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.2e-05    0.0089      20      48 ..      47      74 ..      40      91 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-05
      AAA_15 20 dlseeltvliGkNnsGKSsilealdlFln 48
                +  e l vliG+ ++GKS++l++++ +++
  KIR62719.1 47 PAGE-LVVLIGPSGCGKSTVLRMINRLIE 74
                5567.99*****************99886 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1     4e-05     0.029       1      19 [.      51      69 ..      51     223 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4e-05
      AAA_33  1 lvllvGlpGsGKstlaerl 19
                lv+l+G++G+GKst+++ +
  KIR62719.1 51 LVVLIGPSGCGKSTVLRMI 69
                79************99853 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       4.2     3e+03       6      34 ..      12      42 ..      11      46 .. 0.71
   2 ?   12.1   0.0   0.00024      0.18       2      20 ..      52      70 ..      51      89 .. 0.87
   3 ?   -2.9   0.0       9.6   6.9e+03     106     133 ..     171     199 ..     157     217 .. 0.53

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4.2
      AAA_28  6 GgestGKTtlleaLaar..gypvvpEaarei 34
                G+e +G+ t + aL+     yp  +Ea+re+
  KIR62719.1 12 GPEAAGTPTAAIALEGIgkRYPDGTEAVREL 42
                89999999******95422455556666664 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00024
      AAA_28  2 ivitGgestGKTtlleaLa 20
                +v++G++++GK+t+l+ ++
  KIR62719.1 52 VVLIGPSGCGKSTVLRMIN 70
                8*************99776 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 9.6
      AAA_28 106 ekrydlvfllppapei.dddgeRredlee 133
                 +   d v+ll  +p+  +d  +R+  +ee
  KIR62719.1 171 ALAADPVVLLMDEPFSaVDPIVRTRLQEE 199
                 44445544444444332333344444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00025      0.18       1      22 [.      52      73 ..      52     106 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00025
      AAA_18  1 IlltGtpGvGKttlakeLskrl 22
                ++l G++G+GK+t+ + ++++ 
  KIR62719.1 52 VVLIGPSGCGKSTVLRMINRLI 73
                789*************998874 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00023      0.16      21      39 ..      51      69 ..      34      73 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00023
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                l++++Gp G+GK+T+l+ i
  KIR62719.1 51 LVVLIGPSGCGKSTVLRMI 69
                899*************988 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00028       0.2      13      51 ..      40      78 ..      34     117 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00028
  Mg_chelatase 13 raleiaaaGgHnlllvGppGsGKtmlakrlpsllpplse 51
                  r l + +  g  ++l+Gp+G+GK+ + + ++ l+ p   
    KIR62719.1 40 RELSLRVPAGELVVLIGPSGCGKSTVLRMINRLIEPTAG 78
                  55556565666799****************999987765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00043      0.31       2      22 ..      51      71 ..      50      77 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00043
                CEEEEC-TTTCHHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqklal 22
                lv+l G++G+GK+t l+ + +
  KIR62719.1 51 LVVLIGPSGCGKSTVLRMINR 71
                79**************99866 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00032      0.23      91     121 ..      53      81 ..      45      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00032
  Adeno_IVa2  91 viyGPtGsGksqllrnlissklisPiPetvi 121
                 v+ GP G+Gks +lr +  ++li+P+   ++
  KIR62719.1  53 VLIGPSGCGKSTVLRMI--NRLIEPTAGRIL 81 
                 789************64..999*99977665 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00037      0.27       1      21 [.      52      72 ..      52      92 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00037
  RNA_helicase  1 iwlyGpsgeGKStlakeLaka 21
                  ++l Gpsg+GKSt+ + + + 
    KIR62719.1 52 VVLIGPSGCGKSTVLRMINRL 72
                  6899*********99985443 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0004      0.29      18      53 ..      51      87 ..      39      96 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0004
  Zeta_toxin 18 lillgGqpGAGKselaellkdele.rqgnvvrldpDd 53
                l++l G +G+GKs++++++++ +e ++g+++  d+D 
  KIR62719.1 51 LVVLIGPSGCGKSTVLRMINRLIEpTAGRILLGDEDV 87
                78999***************99995555555555554 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00035      0.25      26      50 ..      52      76 ..      40      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00035
                EEEEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha 26 llllGqseSGKsTilkqlkllykkg 50
                ++l+G s++GKsT+l+ + +l +++
  KIR62719.1 52 VVLIGPSGCGKSTVLRMINRLIEPT 76
                689****************998776 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0056         4      26      44 ..      51      69 ..      41      81 .. 0.86
   2 ?    2.3   0.0      0.13        96     136     180 ..     157     197 ..      96     230 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0056
                EEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldAi 44
                + +++Gp G+GKs +l  i
  KIR62719.1 51 LVVLIGPSGCGKSTVLRMI 69
                6799**********99766 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.13
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkva 180
                 +LSgG+++ v +a  +A        + l+De  +a D   ++++ 
  KIR62719.1 157 ELSGGQRQRVGVARALAADP---V-VLLMDEPFSAVDPIVRTRLQ 197
                 8********99999988432...2.34566666666666555554 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0012      0.85       5      25 ..      52      71 ..      49      85 .. 0.87
   2 ?   -1.2   0.0       1.9   1.4e+03     113     136 ..     199     222 ..     194     233 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0012
      AAA_24  5 iliyGpsgiGKTtlakelgpk 25
                ++++Gpsg GK+t+++++ ++
  KIR62719.1 52 VVLIGPSGCGKSTVLRMI-NR 71
                79************9998.44 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.9
      AAA_24 113 rllkklqelrknvifiahektrkd 136
                 ++l+   e+rk+++++ h   + +
  KIR62719.1 199 EFLRLQAEVRKTIVLVTHDLDEAV 222
                 67888889999****999876665 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00053      0.38       4      24 ..      54      74 ..      51      90 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00053
         PRK  4 vagsSGaGkttvarklekifg 24
                + g+SG+Gk+tv r ++ +++
  KIR62719.1 54 LIGPSGCGKSTVLRMINRLIE 74
                679************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.58
# Mc/sec: 1742.13
//
Query:       KIR62720.1  [L=228]
Description: quaternary ammonium transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-20   73.7  17.2    1.9e-20   73.4  17.2    1.2  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4  17.2   1.1e-24   1.9e-20       7     184 ..      54     224 ..      41     225 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 1.1e-24
  BPD_transp_1   7 laalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvl 103
                    +a +  ++l   ++ ++ vl+++Ps++l+ +l        +lg ++  v+ +++l+a+ +++++  a+l+++p + +eaa+ +G +rw ++ ++ l
    KIR62720.1  54 AVAAHWFRPLAGPILAFTGVLYTIPSLALFAFLA------PYLGIGAVTVLSVVVLYALLVIVRNAVAGLSQVPPEVREAAEGMGYGRWGRLLRIEL 144
                   333789999*************************......9******************************************************** PP

  BPD_transp_1 104 PnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprvr 184
                   P+alp i+tgl+la ++ +   ++   +g  +Glg+l++   +++ y + +++g+l +v++ l+l lv+  l r++ p +r
    KIR62720.1 145 PLALPGILTGLRLATVSTVALVTVGVVVG-RGGLGQLIFAGFQNNFYKAEIMTGTLLCVLLALVLDLVLAGLGRAVTPWLR 224
                   *************************9999.557****************99*************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 1427.59
//
Query:       KIR62721.1  [L=334]
Description: glycine/betaine ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-39  135.2   9.0    8.2e-30  104.2   0.4    2.1  2  OpuAC     Substrate binding domain of ABC-type glycine betain


Domain annotation for each model (and alignments):
>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   2.8   7.1e-13   1.3e-08     187     256 ..      51     119 ..      45     120 .. 0.92
   2 !  104.2   0.4   4.6e-34   8.2e-30       2     185 ..     134     333 ..     133     334 .] 0.94

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 7.1e-13
                 TEEE-B-TTSTS-SSEEEEEEEEHHHHHHSCTHHHHHHHHC..--HHHHHHHHHHHHTTTT-HHHHHHHHHH CS
       OpuAC 187 dlvvLedpkglfppaynvvpvvrkefaekaPevaafLekls..ldtetlnelnaqvdvegkdpeevAkawla 256
                 +lvvL d+k+l+ + +nv p v++++a   Pe+ a+L+k+s  ldt +l +ln++vdv++k+ + +A+++++
  KIR62721.1  51 QLVVLADDKKLQNT-DNVIPAVNAKAA--TPELLAALDKVSaaLDTPKLIALNKAVDVDRKTSKVAAEEFVT 119
                 79************.********6655..688**************************************96 PP

  == domain 2  score: 104.2 bits;  conditional E-value: 4.6e-34
                 EEEEEEESSHHHHHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHH........................HHHHHHHHHHHHEE CS
       OpuAC   2 tivigsknwteqevlaeilkqllekkGykveltnlgstavlfaalasGdiDvypeewtgta........................yeaykkaveekkgl 76 
                 tiv+g  n+te++ +ae+++ +l ++Gy+v+++++g+++ +  al++G+i+v+p e+  t+                         +a+k a+ ek g+
  KIR62721.1 134 TIVVGAGNFTESQTIAELYRIALTAAGYQVKVQQIGNRELYEPALEKGEIQVVP-EYAATMaeflntkangkdaqpvsspeldktVAALK-AAGEKAGI 230
                 9*****************************************************.***************************99554555.5999**** PP

                 EEEEEESEEECEEEEEEHHHHHHHTTTBHHHHCTHHG..GTEEEEEHHCCHSTTSHHCCHHHHHHHHHHT-TTCEEEGSCEEEEHH...HHHHHHHTTC CS
       OpuAC  77 evlgplgagnteglavpkyvaekygiksisDLkkpae..dlelgakgeflgrpdgwgcekvtegllkaYgldkvelvegseaamda...elyaaykrge 170
                 +   p++a++++++av+k++a+kyg++++s+L+++ +  +  l++  e+ +rp   +      gl+++Y++      +gs++ +da   ++++a+k g+
  KIR62721.1 231 AFGTPSAAQDQNAFAVTKAFADKYGVSTLSELAAKCSgsATVLAGPPECPQRPKCQA------GLVEVYDF-----KAGSFSSLDAggpQTKNALKTGS 318
                 **99****************************8888888779999999999999999......******99.....48********************* PP

                 SSEEEEETTSTHHHH CS
       OpuAC 171 pvvvyawtPdwaikk 185
                 + v+ +++ d+a+++
  KIR62721.1 319 ASVGLVFSSDGALAA 333
                 **********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2271.01
//
Query:       KIR62722.1  [L=386]
Description: NADH-quinone oxidoreductase subunit D [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-71  239.5   0.0    1.3e-49  168.8   0.0    2.1  2  Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd s
  ------ inclusion threshold ------
      0.023   13.6   0.0      0.032   13.1   0.0    1.2  1  NiFeSe_Hases    Nickel-dependent hydrogenase


Domain annotation for each model (and alignments):
>> Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   0.0   1.4e-53   1.3e-49       2     170 ..     140     310 ..     139     313 .. 0.97
   2 !   69.7   0.0   2.4e-23   2.1e-19     197     271 .]     312     386 .]     306     386 .] 0.97

  Alignments for each domain:
  == domain 1  score: 168.8 bits;  conditional E-value: 1.4e-53
                     TT-HHHHHHHHHHHHHHHHHHHHHHSSSSS-TTBESSBBSS---TTHHHHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHSSSS-BSHHHHHHHTT CS
  Complex1_49kDa   2 lGaltvflyafreRekildlleevtGaRltasyiriGGvarDlpegllekikeflkelekkldeleklltknrifkkRtkgvgvlskeealelgl 96 
                     +Ga+t+++yafreRe i  ++eev+G R+++ + r+GG+++++p+g++ + ++++ e++++l +l++l+ +n+if +Rt+gvgvls+++a ++g+
      KIR62722.1 140 IGAITPVFYAFRERETIQAVMEEVSGGRIHYMFNRVGGLKEEVPAGWTGRARAAIGEVRRRLPDLDNLIRRNEIFLARTVGVGVLSAADAAAFGA 234
                     8********************************************************************************************** PP

                     -SSSSGGGT-TTTHHHHSS-SSGGGS-------SSBSHHHHHHHHHHHHHHHHHHHHHHHHT--...S-SB---TT CS
  Complex1_49kDa  97 tGpvlRasGvkyDlRkaepYeaYdeldfdvpvgeegDvydRylvrveEmrqSlkIieqaleklpe..gpvlaedkk 170
                     +Gpv+RasG++ DlR++epY aYd+ld  v+++++gD+ +R+ v ++ +  Sl++ e++le++++  gpv+++ +k
      KIR62722.1 235 SGPVARASGLDLDLRRDEPYLAYDQLDVPVVTKTAGDCHARFEVLLDQVYVSLDLAERCLERVDRltGPVNTRLPK 310
                     **************************************************************98777998887665 PP

  == domain 2  score: 69.7 bits;  conditional E-value: 2.4e-23
                     ----SEEEEEEEEETTEEEEEEEEEESSSS-SEEEEE-HHHHTTTTHHHHTTTS-SGGGTHHHHTT---HHHHH- CS
  Complex1_49kDa 197 fkvpkgevyaavEapkGelgvylvsdgsskpyrlkirapsfvnlqaleellkgellaDvvailgsldivlgevDR 271
                     +k+p+g++ya +E+p G  g+ylvs g+++p+rlk+r++s++n+qal++ll g+l+ D++ailgs+ +v+g++D+
      KIR62722.1 312 VKAPEGHTYAWTENPLGINGYYLVSRGEKTPWRLKLRTASYANVQALATLLPGCLVPDLIAILGSMFFVVGDIDK 386
                     789***********************************************************************6 PP

>> NiFeSe_Hases  Nickel-dependent hydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.5e-06     0.032       1      69 [.      64     132 ..      64     139 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.5e-06
                   --HHHHTTTS-GGGHHHHHHTT-SSSTTHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHH CS
  NiFeSe_Hases   1 RGlElilkgrdprdawalvqRiCGVCttvHalasvravedAlgikipknarlirnliaaalllhdhivh 69 
                   RG E++ + rd r+  +l++R     + +  l  v ave+ +g+++p+ a+ +r  +a  + + +h+++
    KIR62722.1  64 RGAEKLFEVRDYRQIIVLANRHDWLSAFSNELGVVLAVERLMGMEVPERATWLRMALAELNRVLNHLMF 132
                   9**************************************************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2589.97
//
Query:       KIR62723.1  [L=363]
Description: hypothetical protein TK50_17250 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-20   73.4   0.0    8.5e-18   64.9   0.0    2.1  1  Methyltransf_28  Putative S-adenosyl-L-methionine-dependent m


Domain annotation for each model (and alignments):
>> Methyltransf_28  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   4.7e-22   8.5e-18      13     257 ..      58     292 ..      50     296 .. 0.80

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 4.7e-22
  Methyltransf_28  13 lgrpskklrliElGpGkGtLmadvLrtlrkflp.efyealeyhlvEaSpqlrerQknrLkekakevkkestvkslgvkveWleelkeipeetgf 105
                      lg p + ++++++G+G+G+L+   L tl++++  ++ ++l+++ vE  p+                       +l+  + W++e ++    tg+
       KIR62723.1  58 LGFPTP-FDIVDVGAGRGELLRA-LATLADEAAgSLSSRLRLTAVELAPRPP---------------------DLPPAIGWTTETPT--GITGL 126
                      677886.99**********9875.6666655451445558888888876543.....................4556688*887664..48*** PP

  Methyltransf_28 106 ilanEffDaLPihqfertedgwrellveltpe....kkakek.......efrltlspsetdplsevlpklskrlka........leegsrieis 180
                      +la+E +D+ P++  + te+gwr +lv+++           +       ++   ++p++t+++  v++++ ++           +e g r+e+ 
       KIR62723.1 127 LLATEWLDNVPVDVAVPTETGWRYQLVNPSTGeetpG----PpltdedhTWLTHWHPTPTPTPGPVIKRFASAEGPepdanlliTEYGGRVEVG 216
                      ***************************9996544450....2444444233333588888888888888777644488999999********** PP

  Methyltransf_28 181 peaeallediaerlakegGaaLiiDYge.ssse.pngtLrairkhklvdpleepGevDltadvDFtalaeaaeeasgle 257
                          +    +  rl++  G+aL +DYg+ ++ + ++gtL+++r  + v p    G++D+ta+v  +++a a+e ++g+ 
       KIR62723.1 217 RGRDLAWAGVVGRLRR--GVALGVDYGHlRQARpVGGTLTGYRGGRQVPPV-PDGSCDVTAHVAMDSVAAAGERVAGCA 292
                      ****************..**********7666699*********9999885.67******************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2587.74
//
Query:       KIR62724.1  [L=433]
Description: hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-38  130.8   0.0    3.3e-23   82.3   0.0    3.0  3  Phytase   Phytase


Domain annotation for each model (and alignments):
>> Phytase  Phytase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.0   1.9e-27   3.3e-23       6     174 ..      15     202 ..      10     231 .. 0.75
   2 !    1.7   0.0    0.0054        97     204     230 ..     252     278 ..     249     321 .. 0.86
   3 !   43.4   0.0   1.2e-15   2.1e-11     247     337 ..     321     408 ..     296     426 .. 0.90

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 1.9e-27
     Phytase   6 staaasllspaaaslsaaeasalkdfkvladaet....davasgddaaddpaiwvhekdpeksklittnkksgllvydlngkqlasy..........ef 90 
                  +++a  l++aa++ +aa a +     v a aet    d  a gd  addpaiwvh+ d + s +i+t k++gl vydl  +++++           e 
  KIR62724.1  15 PALVAVPLLLAASGAAAAPARDDALRAVRAVAETpslyDDEAGGDADADDPAIWVHPTDRAGSLVIATAKNGGLRVYDLAARERQAIatppapgpddES 113
                 56677777778888877777766666677777772233555778888*********************************9988765233333333368 PP

     Phytase  91 gklnnvdlrydfkldgkkidiaaasnrsegkntieiyaidgekgklkaisdpnkpi.....stdise...vygfslyhsqktgkfyalvlgk 174
                 g++nnvdl  +f+l+g+++d+a  ++r   ++ +  y id  +  l  ++ p  p      +++++e    yg+  y    +g+ ya+v  +
  KIR62724.1 114 GRFNNVDLVAGFRLAGQRVDLAVVTDRG--RDQLRFYRIDPATRLLTDVTAPGVPYafsrdQAEVDEqrtAYGLGTYVD-PAGAAYAVVSRR 202
                 **************************97..99********************999722222233443222477777754.567777777654 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.0054
     Phytase 204 qteglvaddeygklyiaeedaaiwkfs 230
                 q eg v d + g +++a+e  ++w+  
  KIR62724.1 252 QVEGTVVDPDTGVVHLAQEKVGLWRTR 278
                 89**********************864 PP

  == domain 3  score: 43.4 bits;  conditional E-value: 1.2e-15
     Phytase 247 gdkltadiegltiyyaedgegyliassqgdnsyavydregkneyvadfeiadgeeidgtsdtdgidvlgfglgkkypkgifvaqdgenlen 337
                 g +++ d+egltiy +    g l+ s+qgd+++  ydr+  ++  + f + dg  +dg+ + dg  v    l + +p g++v  dg n+ +
  KIR62724.1 321 GGRIAQDVEGLTIYRTGRLTGTLVVSAQGDDTFHTYDRR-TGRPTGRFAVVDGA-VDGSQECDGAAVTATPL-PGFPGGLLVVHDGRNTPE 408
                 778999*********************************.99**********95.9************9999.67************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2915.32
//
Query:       KIR62725.1  [L=322]
Description: glycerol-3-phosphate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-37  128.6   0.4    1.1e-37  128.6   0.4    1.6  2  DUF2520         Domain of unknown function (DUF2520)
    3.2e-34  117.6  12.9    3.2e-34  117.6  12.9    1.7  2  Rossmann-like   Rossmann-like domain
    1.4e-05   25.6   1.7    3.6e-05   24.3   1.7    1.7  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
     0.0014   18.8   1.0      0.012   15.8   0.4    2.1  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
  ------ inclusion threshold ------
      0.023   14.6   1.0      0.072   13.0   1.4    1.7  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.074   12.4   0.1       0.13   11.7   0.1    1.3  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
      0.079   12.5   2.3       0.14   11.7   2.3    1.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.14   12.3   0.1       0.33   11.2   0.1    1.6  1  HTH_17          Helix-turn-helix domain
       0.15   13.0   0.5       0.15   13.0   0.5    4.1  4  TPR_14          Tetratricopeptide repeat
       0.23   11.1   8.7       0.47   10.1   5.3    2.7  2  ApbA            Ketopantoate reductase PanE/ApbA
       0.24   11.7   1.8       0.79   10.0   1.8    1.9  1  TrkA_N          TrkA-N domain
        2.4    8.1   4.2         22    5.0   2.9    2.1  2  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen


Domain annotation for each model (and alignments):
>> DUF2520  Domain of unknown function (DUF2520)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       2.2   3.3e+03      51      76 ..      48      73 ..      42     110 .. 0.58
   2 !  128.6   0.4   7.6e-41   1.1e-37       3     127 .]     166     290 ..     164     290 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.2
                HHHHHHHHHHCTT-S-..HHHHHHHH CS
     DUF2520 51 lvalaaellreagldekdaakallpL 76
                l+a +++++++ g++ +++a++ l L
  KIR62725.1 48 LAAAGHRVVAASGVSGATKARIALLL 73
                55556666666666633333333222 PP

  == domain 2  score: 128.6 bits;  conditional E-value: 7.6e-41
                 EEEEESCCCHHHHHHHHHCCSS-EEE--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCTT-S-..HHHHHHHHHHHHHHHHHHS-HHHH--SCCCCT- CS
     DUF2520   3 faiegdeealaiaeelaeelggevvvideedralyHaAavlasNflvtlvalaaellreagldekdaakallpLleatlenalkagpkaalTGPvaRgD 101
                  ++++++e  ++a++l+++lgg + ++ e+dr+lyHaA+++++N+lvtlv++aa+ lr+ag+   +++k+l+pLl+a+lenal++g  +alTGPv+RgD
  KIR62725.1 166 YGVTAPAELRPLAARLVADLGGVPEWVGEADRPLYHAALAHGANHLVTLVNEAADRLRDAGVG--QPEKVLAPLLRAALENALRLGD-DALTGPVSRGD 261
                 689************************************************************..*********************9.*********** PP

                 HHHHHHHHHT.....HHHHHHCCHCHHHH CS
     DUF2520 102 aetvakhlaal...apelaelYralarat 127
                 a+tv++hl+ l   ape  ++Y alar+t
  KIR62725.1 262 AGTVRRHLERLaatAPESVAAYLALARRT 290
                 *********8877899**********986 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6  12.9   2.1e-37   3.2e-34      10     127 .]      29     147 ..      19     147 .. 0.95
   2 ?   -2.8   0.1       3.5   5.3e+03      24      51 ..     268     292 ..     254     311 .. 0.48

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 2.1e-37
  Rossmann-like  10 rlsvGiisaGrvGtalgaaleraghvvvgisaisaasreraerrlPdvpvlevedvaara.ellllavPdaelpglvkglaatgavraGtivahts 104
                     l+vG+++aGrvG++lgaal+ agh vv+ s +s a++ r    lPd +  +   va+ a +lll+avPd el+ +v+gla+tga+r+G++vahts
     KIR62725.1  29 VLTVGVLGAGRVGAVLGAALAAAGHRVVAASGVSGATKARIALLLPDAANRSATSVARAAtDLLLVAVPDDELAAVVAGLAETGALRPGQVVAHTS 124
                    589**********************************************999999987653799******************************** PP

  Rossmann-like 105 ganGveilaPlteqGalPlaihP 127
                    ga+G++ilaP+++ Ga Pla+hP
     KIR62725.1 125 GAHGLGILAPAAAVGARPLALHP 147
                    **********************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.5
  Rossmann-like  24 algaaleraghvvvgisaisaasrerae 51 
                     l    + a   v +  a++    + a+
     KIR62725.1 268 HLERLAATAPESVAAYLALAR---RTAD 292
                    344444444444444444433...2222 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   1.7   2.4e-08   3.6e-05       1      83 [.      31     110 ..      31     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.4e-08
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.-EEECECHHHHHH.H-SEEEE-S-HHHHHHHHHHCGH CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg.vkvtavdneeaae.eadvvvlavkpedveevlselak 83 
                    ++g++GaG++g+ l   l+aag   h +v a  +  + a++++ +l  +++  +++  +a+  +d +++av+   +++v++ la+
     KIR62725.1  31 TVGVLGAGRVGAVLGAALAAAG---HRVV-A-ASGVSGATKARIALLlPDAANRSATSVARaATDLLLVAVPDDELAAVVAGLAE 110
                    58********************...****.5.56666666666443336777767777776678****************99933 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.4     8e-06     0.012       1      90 [.      31     124 ..      31     128 .. 0.76
   2 ?    1.2   0.0      0.25   3.8e+02     110     149 ..     251     290 ..     238     298 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8e-06
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.EEE-S.SHHHHHHHC.SEEEE-SSSHHHHHHHHHSHCC..C--TT-EEEE-S CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.akaae.sieelvasl.dvvitmvkagkavdevieglle..alkkgdilidgs 90 
                    ++g++G G  G+ +   l++ag++v++    + ++++ +a    +aa+ s+ ++++++ d+ ++ v++ ++  +v+ gl+e  al++g+++  +s
     KIR62725.1  31 TVGVLGAGRVGAVLGAALAAAGHRVVAASGVSGATKARIALLlPDAANrSATSVARAAtDLLLVAVPD-DELAAVVAGLAEtgALRPGQVVAHTS 124
                    58*************************99988888888877653333304444444447999999998.67889999988522579999988776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.25
                    EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHH CS
  NAD_binding_2 110 kfldaPVSGGeegAekGtLsimvGGseeafervkpvleai 149
                    + l  PVS G++g  +  L  ++++  e++++   + ++ 
     KIR62725.1 251 DALTGPVSRGDAGTVRRHLERLAATAPESVAAYLALARRT 290
                    66778***********999999999999888776665555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.4   4.8e-05     0.072       1      30 [.      31      60 ..      31     109 .. 0.82
   2 ?   -3.3   0.0       4.8   7.1e+03      33      56 ..     278     301 ..     271     314 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.8e-05
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdi 30
                +v+v+GaG +Ga + a++a+ag++Vv    
  KIR62725.1 31 TVGVLGAGRVGAVLGAALAAAGHRVVAASG 60
                69***********************98654 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.8
                 HHHHHHHHHHHHHHHCCTTTTSS- CS
     3HCDH_N  33 ealekalekieksleklvekgklk 56 
                 e++++ l+ ++++ ++++++g+l 
  KIR62725.1 278 ESVAAYLALARRTADRAIASGRLR 301
                 334444444444444444555444 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   8.4e-05      0.13      37      67 ..      30      60 ..      25      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.4e-05
                  SEEEEES-SHHHHHHHHHHHHTT-EEEEESS CS
  2-Hacid_dh_C 37 ktvGiiGlGrIGqavakrlkafgmkviaydr 67
                   tvG++G+Gr+G  +   l+a g +v+a + 
    KIR62725.1 30 LTVGVLGAGRVGAVLGAALAAAGHRVVAASG 60
                  59************************99875 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.3   9.3e-05      0.14       2      28 ..      31      57 ..      30      61 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.3e-05
                    EEEEE--STTHHHHHHHHHHCTSEEEE CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevig 28
                    ++ v+G+G vG+v +a+la++gh v+ 
      KIR62725.1 31 TVGVLGAGRVGAVLGAALAAAGHRVVA 57
                    689**********************85 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00022      0.33       6      30 ..     279     303 ..     277     317 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
      HTH_17   6 EaAelLgvsrstvyrlirrgelpaa 30 
                  +A++L + r+t+ r i +g+l++a
  KIR62725.1 279 SVAAYLALARRTADRAIASGRLRPA 303
                 59*********************98 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.7       3.1   4.6e+03      20      39 ..      85     104 ..      64     110 .. 0.66
   2 ?   -1.8   0.0       5.6   8.3e+03      23      37 ..     199     213 ..     197     220 .. 0.75
   3 ?    0.1   0.3       1.4     2e+03      15      30 ..     228     244 ..     217     255 .. 0.62
   4 ?   13.0   0.5    0.0001      0.15      14      43 ..     259     288 ..     257     289 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.1
      TPR_14  20 AiallrralalaPddaeawl 39 
                 A+a+ + +l + Pdd+ a  
  KIR62725.1  85 ARAATDLLLVAVPDDELAAV 104
                 56666666778899987654 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5.6
      TPR_14  23 llrralalaPddaea 37 
                 l+++ala++ +++++
  KIR62725.1 199 LYHAALAHGANHLVT 213
                 789999988777655 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.4
      TPR_14  15 GdpdeAia.llrralal 30 
                 G+p++ +a llr+al+ 
  KIR62725.1 228 GQPEKVLApLLRAALEN 244
                 56666444466666663 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 0.0001
      TPR_14  14 lGdpdeAiallrralalaPddaeawlllaq 43 
                 +Gd  + +++l+r+ a+aP++ +a+l+la+
  KIR62725.1 259 RGDAGTVRRHLERLAATAPESVAAYLALAR 288
                 7999999*********************98 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.3   0.00031      0.47       1      26 [.      32      57 ..      32     123 .. 0.82
   2 ?    0.4   0.1      0.31   4.6e+02      12      37 ..     199     223 ..     198     229 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00031
                EEEES-SHHHHHHHHHHHHHTHCEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtl 26
                + +lGaG +G +l+a La+ag+ v+ 
  KIR62725.1 32 VGVLGAGRVGAVLGAALAAAGHRVVA 57
                579********************975 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.31
                 HHHHHHHH.HTHCEEEE-SCHHHHHHH CS
        ApbA  12 llaakLak.agadvtlilrsrrlealk 37 
                 l+ a La+ a++ vtl++  +  ++l+
  KIR62725.1 199 LYHAALAHgANHLVTLVNEAA--DRLR 223
                 577899998999999999988..4444 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.8   0.00053      0.79       3      97 ..      34     124 ..      32     137 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00053
                 EES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSS.SEEEEEES CS
      TrkA_N   3 iiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpk.kkiiaraq 97 
                 ++G+GrvG  l   L + g+ +vv+       v  +++  +  +  da+++++   a ++  d++++a++dde  ++++ la +      +++a ++
  KIR62725.1  34 VLGAGRVGAVLGAALAAaGH-RVVAASG----VSGATKARIALLLPDAANRSATSVARAA-TDLLLVAVPDDELAAVVAGLAETGALRpGQVVAHTS 124
                 89***************555.3554433....7888888899999999999999888876.699**************9999764333456777665 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   2.9     0.015        22       2      26 ..      32      56 ..      31      66 .. 0.93
   2 ?    2.2   0.0       0.1   1.6e+02      67      93 ..      86     112 ..      73     129 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.015
                    EEEE--SHHHHHHHHHHHTTT--EE CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevr 26
                    ++vlGaG  G  l ++la +gh+v+
      KIR62725.1 32 VGVLGAGRVGAVLGAALAAAGHRVV 56
                    89********************997 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.1
                     HTT--EEEE---HHHHHHHHHHHCCC- CS
  NAD_Gly3P_dh_N  67 lkgadiivlvvPsqalrevlkklkgll 93 
                      +  d+++++vP   l+ v++ l+++ 
      KIR62725.1  86 RAATDLLLVAVPDDELAAVVAGLAETG 112
                     3456899************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2205.26
//
Query:       KIR62726.1  [L=282]
Description: pantoate--beta-alanine ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-91  304.7   0.0    5.8e-91  304.4   0.0    1.0  1  Pantoate_ligase  Pantoate-beta-alanine ligase
     0.0056   16.2   0.1     0.0088   15.5   0.1    1.2  1  ATP-sulfurylase  ATP-sulfurylase
  ------ inclusion threshold ------
      0.037   13.9   0.0       0.56   10.1   0.0    2.1  2  FAD_syn          FAD synthetase


Domain annotation for each model (and alignments):
>> Pantoate_ligase  Pantoate-beta-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.4   0.0   9.7e-95   5.8e-91       4     265 ..       6     274 ..       2     275 .. 0.89

  Alignments for each domain:
  == domain 1  score: 304.4 bits;  conditional E-value: 9.7e-95
                      ESHHHHHHHHHHHHHT.T-EEEEEEE-SS-GHHHHHHHHHHHHHSSEEEEEEEEEGGGSSTTSCTTTSEEEHHHHHHHHHHTT-SEEE---HHH CS
  Pantoate_ligase   4 ktvaelrellkelrke.gkkvglVpTmGaLHeGHlsLvkaakeendvvvvSiFvNplqFgpkedlekYPrtleaDlelleeagvdlvFaPsvee 96 
                      +t ael ++    r++ + +vg+V TmGaLH+GH +L++aa+e++d+v+v+iFvNplqFgp+ed+++YPrtleaDle++++ag+d+vFaP+  e
       KIR62726.1   6 RTRAELAKA----RAAlTGTVGVVMTMGALHAGHETLLRAARERADHVLVTIFVNPLQFGPNEDFDRYPRTLEADLEVCRRAGADVVFAPDRGE 95 
                      455555555....4443458************************************************************************** PP

                      HST.....EEEEECSGGCSTHHHHSTTHHHHHHHHHHHHHHHHT-SEEEEEGGGHHHHHHHHHHHHHTT-SSEEEEEEEEBETTSEBTTGGGGG CS
  Pantoate_ligase  97 myp.....ttvevkelsevlegasrpghFrGVatvvtkLfnivqpdrayfGqKDaqqlavirrlvkdlnlpveivavpivReedgLAlSSRNky 185
                      +yp     ++v++ +l++ leg srpg+F+GV+tvv kLf++++pd a+fG+KD+qql+++rr+++d+++pve+v+vp+vRe+dgLAlSSRN+y
       KIR62726.1  96 VYPdgeplVRVDPGRLADDLEGLSRPGFFHGVLTVVLKLFHLTRPDLAFFGEKDYQQLTLVRRMARDFDVPVEVVGVPTVREPDGLALSSRNRY 189
                      ***9**99999999******************************************************************************** PP

                      S-HHHHHHTTHHHHHHHHHH....BHHHHH.......HHHHHHHHTHTTE.EEEEEEEEETTTSS..BSSB.SEEEEEEEEEETTEEEEEEE CS
  Pantoate_ligase 186 LseeerkaAlvlykaLkaak....eaealk.......eaakeeleeeele.kadyveivdaetleeleleeekkavllvaakvgkvrLiDni 265
                      Ls+ er+aAl+l++aL+a +    +            +a++++l + +   ++dyv+++da +le+ +     +a+ll+aa+vg++rLiDn+
       KIR62726.1 190 LSPPEREAALTLSAALRAGAaaadR----GepggevlAAVHRALGDGPPGvEVDYVALTDA-DLEPGP--PPGPARLLIAARVGTTRLIDNV 274
                      ******************9944440....134444436777777777766578*******9.575633..4588*****************8 PP

>> ATP-sulfurylase  ATP-sulfurylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.5e-06    0.0088      21      66 ..      21      65 ..       3      79 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-06
                     SEEEEEESS---HHHHHHHHHHHHHTSEEEEEEEB-SB-STTSTTH CS
  ATP-sulfurylase 21 kVvAfqtrnplHraHeellkraleeeadglllhplvgptkpgdvpa 66
                     +V  ++t   lH +He ll+ a e +ad +l++  v p + g  ++
       KIR62726.1 21 TVGVVMTMGALHAGHETLLRAARE-RADHVLVTIFVNPLQFGPNED 65
                     466788999***************.799999999999887665444 PP

>> FAD_syn  FAD synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   9.3e-05      0.56       8      43 ..      24      56 ..      19      90 .. 0.76
   2 ?    1.6   0.0     0.037   2.2e+02      91     145 ..     117     171 ..     111     186 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 9.3e-05
     FAD_syn  8 avvtlGnFDGvHlGHqallkkaveaakekglpsvvv 43
                 v+t+G+   +H GH++ll+ a+e+a++  +++ v 
  KIR62726.1 24 VVMTMGA---LHAGHETLLRAARERADHVLVTIFVN 56
                5777776...8**************98776666664 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.037
     FAD_syn  91 elsaeeFiekllveklkvkavvvGfdfrfGkkregdvellkelgaklgfevevvp 145
                  ls   F++ +l+  lk+ +++  +   fG+k   + +l++++++ +++ vevv 
  KIR62726.1 117 GLSRPGFFHGVLTVVLKLFHLTRPDLAFFGEKDYQQLTLVRRMARDFDVPVEVVG 171
                 56677788888888888888888888899*****************998887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1907.67
//
Query:       KIR62727.1  [L=141]
Description: aspartate decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-52  175.3   0.0    3.9e-52  175.0   0.0    1.1  1  Asp_decarbox  Aspartate decarboxylase


Domain annotation for each model (and alignments):
>> Asp_decarbox  Aspartate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.0   0.0   2.2e-56   3.9e-52       1     114 [.       1     114 [.       1     115 [. 0.99

  Alignments for each domain:
  == domain 1  score: 175.0 bits;  conditional E-value: 2.2e-56
                   XEEEEEEEEEEEEEXXEEETTXXXXEEEEHHHHHHCT--TTBEEEEEETTT--EEEEEEEEESTTTT-EEEEGGGGGG--TT-EEEEEEEEEEEHHH CS
  Asp_decarbox   1 mlrtllksKihratvteaelnYeGSitideelleaagileyekvqvvnvnngeRletYvikgergsgviclnGaaarlvqvgdkviiiayaqleeee 97 
                   m+rt+lksKihratvt+a+l+Y+GS+t+de+ll+aa++l++e+v +v+v+ng+RletYvi+gergsgvi +nGaaa+lv++gd vi+i+y q++++e
    KIR62727.1   1 MFRTMLKSKIHRATVTQADLHYVGSVTVDEDLLDAADLLPGEQVAIVDVTNGARLETYVIPGERGSGVIGINGAAAHLVHPGDLVILISYGQFDDAE 97 
                   89*********************************************************************************************** PP

                   HHH---EEEEE-TTS-E CS
  Asp_decarbox  98 akelkpkvvlvdeknri 114
                   a++++p+vv+vd+ nr+
    KIR62727.1  98 ARAYRPRVVHVDAANRV 114
                   ***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1008.45
//
Query:       KIR62728.1  [L=298]
Description: hypothetical protein TK50_17275 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.8e-49  166.4   0.1      8e-49  166.2   0.1    1.1  1  Septum_form  Septum formation


Domain annotation for each model (and alignments):
>> Septum_form  Septum formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.2   0.1   4.5e-53     8e-49       4     226 .]      51     272 ..      48     272 .. 0.94

  Alignments for each domain:
  == domain 1  score: 166.2 bits;  conditional E-value: 4.5e-53
  Septum_form   4 Cltwdesa..dasdlekVdCaeehrfevvaredlsaypgsefgagapppseeraaelaeelCeqavaeylggkldpagrfsigvilPseaaWaaGdRt 99 
                  C  +d  +    s++++VdCa +hr+e+v+   ++a+p++ +   app s +   ++  ++C++++++y+g++++ agr++++v +Ps+++W++G+R+
   KIR62728.1  51 CQVADFVDvlPLSAYAPVDCALPHRVETVH---VGAFPADRA---APPGSGSPELRAPFADCDTKATAYVGDDWR-AGRLRLAVAVPSKTGWTSGARW 141
                  66666655567899****************...998888766...9999**************************.********************** PP

  Septum_form 100 lrCglqvtgssg...klvertgkvaeqdqskvaeagtClaikedk..kaev.dpVdCaepHaaevvgvvdladkfpdaypseeeqdeklekaCaaaaa 191
                  +rC+l+++++++   ++v+rtg+++++++ +++ +  C + ++ +   a+v +pV+Ca +H+ae+vgv++++dk   +yp++++++  + + C+++ a
   KIR62728.1 142 YRCDLTEVSTAEagaTPVTRTGSLRDALKGPSPLRLGCQRSDNVGrrGAQVlKPVECATRHDAEFVGVWKAPDK---PYPARDADWLPFYTGCRTVLA 236
                  ******999888889**************************98777788999********************99...********************* PP

  Septum_form 192 eYlggp..dklrkstltvfwstlseesWkaGsrkvnC 226
                  +Y+g+p  d+lr++++ v+ ++  + +W+ G+r+v+C
   KIR62728.1 237 RYAGVPddDDLRYRSGLVVRPP-GAGRWRVGDRGVRC 272
                  *****9999************9.************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1948.47
//
Query:       KIR62729.1  [L=565]
Description: aspartate oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-90  302.9  18.0    3.9e-90  302.9  18.0    1.6  2  FAD_binding_2   FAD binding domain
    1.3e-12   47.8   0.7    1.3e-10   41.4   0.7    2.3  1  Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
    2.3e-12   46.7   5.6    8.4e-06   25.2   0.2    3.0  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    2.4e-12   47.1  12.8    9.2e-11   41.9   6.4    3.0  2  DAO             FAD dependent oxidoreductase
    8.4e-06   25.3   0.5    1.3e-05   24.7   0.5    1.2  1  FAD_binding_3   FAD binding domain
    0.00038   20.6   0.7    0.00038   20.6   0.7    2.8  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00045   19.5   0.4    0.00045   19.5   0.4    2.5  3  Thi4            Thi4 family
     0.0016   17.2   4.3     0.0051   15.6   0.4    2.8  3  HI0933_like     HI0933-like protein
     0.0016   18.8   0.2     0.0037   17.7   0.2    1.6  1  NAD_binding_7   Putative NAD(P)-binding
     0.0034   16.7   0.3     0.0078   15.5   0.1    1.7  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
     0.0036   16.4   1.3     0.0036   16.4   1.3    1.7  2  GIDA            Glucose inhibited division protein A
     0.0052   15.9   0.2      0.011   14.9   0.2    1.5  1  Lycopene_cycl   Lycopene cyclase protein
     0.0076   15.6   0.8      0.016   14.5   0.8    1.5  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.011   15.1   1.7      0.021   14.2   1.7    1.4  1  FAD_oxidored    FAD dependent oxidoreductase
      0.032   14.8   1.3      0.032   14.8   1.3    1.9  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
       0.11   12.1   0.0       0.21   11.2   0.0    1.4  1  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
       0.14   11.0   0.6       0.21   10.4   0.6    1.2  1  Trp_halogenase  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.9  18.0   3.7e-93   3.9e-90       1     417 []      27     419 ..      27     419 .. 0.94
   2 ?   -1.5   0.2      0.93   9.8e+02      99     163 ..     471     536 ..     455     539 .. 0.71

  Alignments for each domain:
  == domain 1  score: 302.9 bits;  conditional E-value: 3.7e-93
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    DviV+GsG+AGL+AAl ++eaGl v+vv+k++   g+t w+qGgi+avl  ++      d+p +h++dt  a+ +l+d+++v+++ve++p  ++eL
     KIR62729.1  27 DVIVVGSGVAGLTAALHLREAGLHVTVVTKVNIDDGSTRWAQGGIAAVL-DPA------DTPAAHAFDTEVAGVGLCDPAAVRVLVEEGPTRLREL 115
                    9************************************************.444......99*********************************** PP

                    HHTT----BCCTSSB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCT.EEEEESEEEEEEEECTT.......EEEEEEEEET.. CS
  FAD_binding_2  97 eelgvpfsrtedgpvdvrelGglsatartlhdaadarretlvtghallarlvesarkag.vdfqerteadeLivedg.......rvtGavvenp.. 182
                    ++ g+ f+r++dg + +++ Gg++a+ r++h  +da      tg ++  +l++++++ + +++ e++ +++L++  g        + G++++ +  
     KIR62729.1 116 MRIGAEFDRHPDGSLMLTREGGHRAD-RIVHAGGDA------TGAEVQRALHAAVQRDPwIRLVEHALVLDLLRAPGdgpgglgPACGITLHVLge 204
                    **************************.****9***9......*************8888***************9667799999777777777743 PP

                    .TTTCEEEEEESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTB...........B- CS
  FAD_binding_2 183 .esgrevrirakavvlatgGfgrallkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgi...........Li 266
                     ++ +  ++ a+avvlatgG+g+          ++  ttn++  tGdg ala ragaa++d  +e+vqfhPt+l+   +++g+           L+
     KIR62729.1 205 gSEDGVGALLARAVVLATGGMGQ----------VFSATTNPAVSTGDGVALAMRAGAAVTD--VEFVQFHPTALI---TPAGAgvpgagraqqpLV 285
                    3555555****************..........****************************..************...34444459999******* PP

                    -THHHHTT-EEE-TTSSBTH......GGGS-HHHHHHHHH.HHHHTTTSCCBEEEE-TT.SSHHHHHHHSHHHHHHHHHCCT......S-TTTSEE CS
  FAD_binding_2 267 tealrgeGgilvdkdGrrFm......nelasrdvvsrailekeiaeggseanvyldashgldaegleatleaineeaangldkdfgrgidpadrpi 356
                    +ealrgeG+ lvd dG+rFm      +ela+rdvv++ i +     +g  ++vylda+h l+ + l+ ++++i   +   ++      +dpa+  i
     KIR62729.1 286 SEALRGEGAHLVDGDGKRFMvgqhelAELAPRDVVAKGIHRVML-ATGA-DHVYLDARH-LGGDFLAGRFPTIVASCLA-IG------VDPATDLI 371
                    ****************************************5544.5555.8********.************9999999.99......******** PP

                    E.......EEEEEEEES-EEEBETTSBESTTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 357 pgpfyavkvvpaqhytmgGvetdengrvldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                    p       v pa+hy  gGv+td++gr+       ipGLYA+Geva++gvhganrl++nsl
     KIR62729.1 372 P-------VAPAAHYASGGVRTDLRGRT------SIPGLYACGEVACTGVHGANRLASNSL 419
                    *.......********************......*************************98 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.93
                    TT----BCCTS.SB-EEE-TT-SSTEEEE-.STT-.......HHHHHHHHHHHHHHTCTEEEEESEE CS
  FAD_binding_2  99 lgvpfsrtedg.pvdvrelGglsatartlhdaadarr.etlvtghallarlvesarkagvdfqerte 163
                     g+ + r++d  +  ++elG+l    r  + +ad +  + ++   al+a+ +++ + +g++ +e ++
     KIR62729.1 471 RGAGVLRSADTlAATATELGELGSG-RGTPRTADWEAtNLITVASALVAAAYARQETRGCHWREDHP 536
                    4555555555566778888988888.66666999988777777889999999998888888777776 PP

>> Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.7   1.2e-13   1.3e-10       4     102 ..     465     550 ..     463     561 .. 0.84

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1.2e-13
                     HHHHHHHHSSSSB-HHHHHHHHHHHHHHHHHHTTB--S---SSS-HHHHHHHHHHHHHHHHHHHHHHHHH--S-BTTBEBTTS-SEETTT-SEEE CS
  Succ_DH_flav_C   4 LgkimqkkvgvfRteegLkealkelkelrerlknvkvtdkskvaNqelvealelanllelAeaiaksAlaRkESrGaHaredfperdDenwlkht 98 
                     L+++m++ +gv R++++L+ + +el el +                  +  +e +nl+++A a++++A aR+E rG+H+red+p   De+w+ h 
      KIR62729.1 465 LQRAMTRGAGVLRSADTLAATATELGELGSGRGT------------PRTADWEATNLITVASALVAAAYARQETRGCHWREDHP-TADERWRGHL 546
                     8999999999999999999999999999776442............333346789*****************************.8999*****9 PP

                     EE.. CS
  Succ_DH_flav_C  99 lasl 102
                     +a +
      KIR62729.1 547 VAEV 550
                     9955 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.2     8e-09   8.4e-06       2      31 ..      27      60 ..      26     115 .. 0.85
   2 !   22.5   1.1   5.3e-08   5.6e-05     231     280 ..     358     408 ..     200     422 .. 0.56

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 8e-09
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE....T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve....l 31
                 dv+v+G+G+AGl+aal+l++ag+ vt+v     +
   KIR62729.1 27 DVIVVGSGVAGLTAALHLREAGLHVTVVTkvniD 60
                 9***************************544442 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 5.3e-08
                  EEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGC..TE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xx RF
  Pyr_redox_2 231 vvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDva..gg 280
                   ++a+Gv p t+l+   +  +    gg+ +d ++rt++pg+ya+G va  g 
   KIR62729.1 358 SCLAIGVDPATDLI-PVAPAAHYASGGVRTDLRGRTSIPGLYACGEVActGV 408
                  4689**********.5555555689***********************6633 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   6.4   8.7e-14   9.2e-11       1     127 [.      27     168 ..      27     310 .. 0.85
   2 !    7.5   0.3    0.0026       2.7     115     166 ..     428     479 ..     365     547 .. 0.71

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 8.7e-14
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS..STHHSTH...............HHHHHHHHHHHHHHHHHHHHSSTTS CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl..rylpeas...............elarlslealeelreleeelgidid 80 
                 dv+++G+G++Gl++A++L ++g  Vt++ k +i   g++  ++g +++ l  +++p a+               ++  l++e+  +lrel +  g ++d
  KIR62729.1  27 DVIVVGSGVAGLTAALHLREAGlhVTVVTKVNIDD-GSTRWAQGGIAAVLdpADTPAAHafdtevagvglcdpaAVRVLVEEGPTRLRELMRI-GAEFD 123
                 8*****************9999*********6666.**********99888876777779*************75558999**********99.999** PP

                 EEEEEEEEEESSHHHHHHHHHHHHHH.HHTTTTE.EEEEHHHHHHHSTT CS
         DAO  81 yrrtGllslaadeeelealdkllall.leaglda.elldaeevrelepa 127
                  ++ G+l l+++     + d+ ++++  + g+++ + l a  + +++p 
  KIR62729.1 124 RHPDGSLMLTRE--GGHRADRIVHAGgDATGAEVqRALHA--AVQRDPW 168
                 *********986..46778888888765567776446766..5677775 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0026
                 EEEHHHHHHHSTT.STTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEES CS
         DAO 115 lldaeevrelepa.lpgllgalfypdtgqvdpakltaalaraaealGveileg 166
                  + ++ +++  p   ++  g+ +  ++g+v pa+ t+al+ra+ ++++ ++  
  KIR62729.1 428 RIAED-IAAGLPEqARPAEGGAWAGGGGWVVPAEGTPALQRAMTRGAGVLRSA 479
                 34333.4444444333778***********************98877777665 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.5   1.2e-08   1.3e-05       2      34 ..      26      58 ..      25      69 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.2e-08
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   tdV++VG+G aGl++al L+eaG  v++v+k +
     KIR62729.1 26 TDVIVVGSGVAGLTAALHLREAGLHVTVVTKVN 58
                   8*****************************987 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.7   3.6e-07   0.00038       1      25 [.      30      54 ..      30      58 .. 0.94
   2 ?   -0.7   0.2       1.6   1.7e+03       6      18 ..     513     525 ..     513     532 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.6e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlll 25
                   +vG+G++Gl+aA +L++ag++v+++
     KIR62729.1 30 VVGSGVAGLTAALHLREAGLHVTVV 54
                   8**********************97 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.6
                    HHHHHHHHHHHCC CS
  NAD_binding_8   6 lsGlvaAylLaka 18 
                    +s+lvaA++++++
     KIR62729.1 513 ASALVAAAYARQE 525
                    589******9996 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.4   4.2e-07   0.00045      17      61 ..      25      69 ..      20      80 .. 0.81
   2 ?   -0.1   0.0      0.42   4.5e+02     209     231 ..     391     414 ..     388     417 .. 0.84
   3 ?   -3.0   0.4       3.2   3.3e+03      46      62 ..     437     453 ..     422     456 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.2e-07
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES.SSS--TTTTTTS CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailer.svspGGGawlGG 61
                 +Dv++vG+G +GLtaa  l ++ +l+v+++ + ++  G   w  G
  KIR62729.1 25 TTDVIVVGSGVAGLTAALHLREA-GLHVTVVTKvNIDDGSTRWAQG 69
                58******************999.***9988642566677777644 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.42
                 CEEETTEEE-T.HHHHHHHT-EB- CS
        Thi4 209 revvpnlyvaG.mevaevdganRm 231
                 r  +p+ly++G ++ + v+ganR+
  KIR62729.1 391 RTSIPGLYACGeVACTGVHGANRL 414
                 66789*****9668899******8 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 3.2
                 EEESSSS--TTTTTTST CS
        Thi4  46 ilersvspGGGawlGGq 62 
                 + e+     GGaw GG 
  KIR62729.1 437 LPEQARPAEGGAWAGGG 453
                 556666677999*9985 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.4   4.8e-06    0.0051       2      31 ..      27      56 ..      26      59 .. 0.93
   2 ?    0.9   0.1      0.14   1.5e+02     152     190 ..     212     256 ..     206     264 .. 0.72
   3 ?   -0.1   0.0      0.28   2.9e+02     373     384 ..     392     403 ..     375     410 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.8e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-S CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllek 31
                 dviv+G G AGl aA++++++g +V+++ k
   KIR62729.1 27 DVIVVGSGVAGLTAALHLREAGLHVTVVTK 56
                 8*************************9976 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.14
                  EEEESEEEE----S......S-GGGT--SHHHHHHHHTT--EEEE CS
  HI0933_like 152 eleadklvlAtGGl......SiPklGstgkgyklaeqfghtivpl 190
                  +l a+++vlAtGG+            stg+g+ la  +g  ++++
   KIR62729.1 212 ALLARAVVLATGGMgqvfsaTTNPAVSTGDGVALAMRAGAAVTDV 256
                  577999******973322111222359999999999999999876 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.28
                  TTSTTEEE-GGG CS
  HI0933_like 373 kkvpgLffaGEv 384
                   ++pgL+ +GEv
   KIR62729.1 392 TSIPGLYACGEV 403
                  358********9 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   3.5e-06    0.0037       6      64 ..      24      80 ..      22     105 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.5e-06
  NAD_binding_7  6 kgkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvklaeeelekdlegadl 64
                   ++  v+vvG G  +++ + +l eag +vtvv++   ++ ++  ++a+  + + l+ ad+
     KIR62729.1 24 ETTDVIVVGSGVAGLTAALHLREAGLHVTVVTKV--NIDDGSTRWAQGGIAAVLDPADT 80
                   56789****************************9..67778899999888777776665 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   7.4e-06    0.0078       1      39 [.      29      66 ..      24      70 .. 0.88
   2 ?   -3.3   0.0         4   4.3e+03     123     136 ..     213     226 ..     211     227 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.4e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnignsiyry 39
                 i++G G aGl+aa++l++agl +++++ k ni +  +r+
   KIR62729.1 29 IVVGSGVAGLTAALHLREAGL-HVTVVTKVNIDDGSTRW 66
                 899*****************9.79999999988777777 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4
  Pyr_redox_3 123 yeAkkviiAtGefd 136
                  + A+ v++AtG ++
   KIR62729.1 213 LLARAVVLATGGMG 226
                  67999999*99875 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.3   3.4e-06    0.0036       1      30 [.      27      56 ..      27      72 .. 0.91
   2 ?   -3.6   0.1       4.1   4.4e+03     140     154 ..     214     228 ..     210     245 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.4e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLith 30
                dviV+G G AG+ AAl++ ++G++v+ +t+
  KIR62729.1 27 DVIVVGSGVAGLTAALHLREAGLHVTVVTK 56
                8************************99964 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.1
                 EECEEEE--TT-BT- CS
        GIDA 140 kakavviatGtflkg 154
                  a+avv+atG   + 
  KIR62729.1 214 LARAVVLATGGMGQV 228
                 57899****984433 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2     1e-05     0.011       1      30 [.      27      54 ..      27      68 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvli 30
                   Dv+v+G+G Agl  A +l   ++gl+v+++
     KIR62729.1 27 DVIVVGSGVAGLTAALHL--REAGLHVTVV 54
                   9*****************..9999999998 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.8   1.5e-05     0.016      24      57 ..      20      54 ..      12      62 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
                 TC.B---EEEEESTSHHHHHHHHHHHHTT-EEEEE CS
  AlaDh_PNT_C 24 pg.vepakvlviGgGvaGlqAiatakglgakVtvl 57
                 pg ve   v+v+G GvaGl A+   ++ g +Vtv+
   KIR62729.1 20 PGwVETTDVIVVGSGVAGLTAALHLREAGLHVTVV 54
                 4446699**********************999986 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.7   1.9e-05     0.021       1      30 [.      27      56 ..      27      59 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.9e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLvee 30
                  Dv+VvG+g+aG++AA+   +aG  v +v +
    KIR62729.1 27 DVIVVGSGVAGLTAALHLREAGLHVTVVTK 56
                  9*************************9976 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   1.3   3.1e-05     0.032       2      29 ..      28      55 ..      27      58 .. 0.95
   2 ?   -2.5   0.0       7.3   7.7e+03       2      19 ..     143     160 ..     142     164 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.1e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEE CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvve 29
                v+vvG+G+ gl +A  l+e g +Vtvv 
  KIR62729.1 28 VIVVGSGVAGLTAALHLREAGLHVTVVT 55
                89************************96 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7.3
                 EEEECSSHHHHHHHHHHH CS
   Pyr_redox   2 vvvvGgGyiglElAgala 19 
                 +v  Gg+ +g E+  al+
  KIR62729.1 143 IVHAGGDATGAEVQRALH 160
                 67789*****99988776 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0002      0.21       4      36 ..      25      57 ..      22      83 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
                TS-EEEES-SHHHHHHHHHHHHTT--EEEEE-T CS
        IlvN  4 gkkiaviGyGsqGhaqalnlrdsgldvvvglre 36
                   + v+G G  G + al lr++gl+v+v  + 
  KIR62729.1 25 TTDVIVVGSGVAGLTAALHLREAGLHVTVVTKV 57
                56799**********************997654 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6    0.0002      0.21       1      36 [.      27      59 ..      27      62 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0002
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseei 36
                    ++++vG G aG +aA +l++a+   l+vt+v + +i
      KIR62729.1 27 DVIVVGSGVAGLTAALHLREAG---LHVTVVTKVNI 59
                    699*******************...99999988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3869.10
//
Query:       KIR62730.1  [L=314]
Description: nicotinate-nucleotide pyrophosphorylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-55  187.8   0.4    1.8e-55  187.3   0.4    1.2  1  QRPTase_C        Quinolinate phosphoribosyl transferase, C-te
      1e-22   79.9   5.2    7.4e-22   77.2   2.2    2.9  2  QRPTase_N        Quinolinate phosphoribosyl transferase, N-te
  ------ inclusion threshold ------
      0.083   12.7   0.1      0.083   12.7   0.1    2.5  4  Biotin_lipoyl_2  Biotin-lipoyl like


Domain annotation for each model (and alignments):
>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.3   0.4     3e-59   1.8e-55       1     169 []     146     310 ..     146     310 .. 0.98

  Alignments for each domain:
  == domain 1  score: 187.3 bits;  conditional E-value: 3e-59
                 HHHHHHHHHHHHHCTSSEEEE-S---TTTHHHHHHHHHHTTSB--TSSTTTSEEE-HHHHHHHSSHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHH CS
   QRPTase_C   1 iAtltarmveaaksakvrildTRkttPglrllekyAvliGGgdnhrlgLsdmvlikdnhiaaagsiveavksvreavdkevkievevesleeleevlea 99 
                 +At t+++++a++++k+++ldTRkttPglr+lekyAv++GGg+n+r+gL+d+++ikdnh  aag++  a ++vre+ +  + ++vev++l+e+ e++ea
  KIR62730.1 146 VATHTRAWADALAGTKATVLDTRKTTPGLRALEKYAVRAGGGTNKRMGLYDVAMIKDNHKFAAGGVAAAYRRVREVFPGVA-VQVEVDTLAEALEAVEA 243
                 8****************************************************************************9986.***************** PP

                 T-SEEEEES--HHHHHHHHHHHHHHSTTSEEEEESS--TTTHHHHHCTT-SEEEECHHCHTB----EEEE CS
   QRPTase_C 100 eadiimLDnfsveelkkaveelkeknkrvlievSGgvtlenveeyaksgvdvisvgalthsvkalDislk 169
                 +ad  +LDn+++ +l+++v    +   r ++e+ Gg+tl+ v+ey  +gvd++svgalths++ lD++l+
  KIR62730.1 244 GADFLLLDNMTPATLREVVA---AVGDRAELEATGGLTLDVVAEYGATGVDYLSVGALTHSSPILDVALD 310
                 ********************...6677889*************************************996 PP

>> QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   2.2   1.2e-25   7.4e-22       4      89 .]      36     144 ..      34     144 .. 0.98
   2 ?   -1.2   0.1      0.35   2.1e+03      28      51 ..     210     230 ..     198     249 .. 0.57

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 1.2e-25
                 --HHHHHHGCTTSEEEEEEEESSSEEE-SHHHHHHHHHHH.......................TTTEEEESS-TT-EEETTEEEEEEEEEHHHHHHHHH CS
   QRPTase_N   4 gDlttealipeekkakaeiiakeegvvaGlevaeevfell.......................pglevellvkDGervekgdvlleieGnarallsaER 79 
                  D+t+ a+ip++++ +a+++a+++gvvaGl+va++ fel+                       +++ev++ ++DG+rv++gdvl+++ G++r ll+aER
  KIR62730.1  36 LDVTSVATIPATQTDTADLVARADGVVAGLAVAAAAFELAaevtgfpagpgagpaagakagggRTVEVSVVAHDGQRVARGDVLATVAGPTRLLLTAER 134
                 7************************************************************9999********************************** PP

                 HHHHHHHHHH CS
   QRPTase_N  80 vaLnllqrlS 89 
                 +aLnll r+S
  KIR62730.1 135 TALNLLCRMS 144
                 *********9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.35
                 EEE-SHHHHHHHHHHHTTTEEEES CS
   QRPTase_N  28 gvvaGlevaeevfellpglevell 51 
                 gv a    ++evf  +   +v+++
  KIR62730.1 210 GVAAAYRRVREVFPGV---AVQVE 230
                 4444455555555544...43333 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.58   3.5e+03       7      18 ..      56      67 ..      52      68 .. 0.84
   2 ?   12.7   0.1   1.4e-05     0.083      15      32 ..     104     121 ..      97     126 .. 0.85
   3 ?   -3.2   0.0       1.3   8.1e+03      36      48 ..     151     163 ..     150     164 .. 0.82
   4 ?   -3.3   0.1       1.4   8.1e+03      36      48 ..     232     244 ..     227     245 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.58
  Biotin_lipoyl_2  7 apvsGrVaqlnV 18
                     a+ +G+Va l+V
       KIR62730.1 56 ARADGVVAGLAV 67
                     6779***99998 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.4e-05
  Biotin_lipoyl_2  15 qlnVkdGqrVkaGdvLae 32 
                      ++  +dGqrV  GdvLa+
       KIR62730.1 104 SVVAHDGQRVARGDVLAT 121
                      45568************8 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.3
  Biotin_lipoyl_2  36 ralqlalaqaeaq 48 
                      ra ++ala  +a+
       KIR62730.1 151 RAWADALAGTKAT 163
                      7889999999997 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 1.4
  Biotin_lipoyl_2  36 ralqlalaqaeaq 48 
                      + l+ al  +ea+
       KIR62730.1 232 DTLAEALEAVEAG 244
                      4566888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 1873.05
//
Query:       KIR62731.1  [L=252]
Description: pantothenate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-64  217.6   0.0    1.9e-64  217.4   0.0    1.1  1  Pan_kinase  Type III pantothenate kinase
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.19   11.6   0.0    1.2  1  CK2S        Casein Kinase 2 substrate


Domain annotation for each model (and alignments):
>> Pan_kinase  Type III pantothenate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.4   0.0   2.1e-68   1.9e-64       1     208 []       2     204 ..       2     204 .. 0.98

  Alignments for each domain:
  == domain 1  score: 217.4 bits;  conditional E-value: 2.1e-68
                 EEEEEE-SSEEEEEEEETTCCEETEEEEEEEEESCHHHHHHHHHHCHCCCCEGCEEEEEEESSCHHHHHHHHHHHHHHSS-EEEES.CSSECTCEE-SS CS
  Pan_kinase   1 lLliDiGNtrikwalfegeellaswriastaasrtadelaellesllkaagleieaviissVvpaavaalleallkyfkveplvvrssaaklgltngyd 99 
                 lL+iDiGNt++++a f+g++l++swri +t+a++tadel+ ++++ll+ + +ei++v+ +s+vpaa ++l+++l +y++  p v+ ++++++g+++++d
  KIR62731.1   2 LLCIDIGNTNTVLATFDGDKLVHSWRI-KTDARSTADELGLMFRGLLAGDAVEITGVAACSTVPAALRSLRTMLARYYADLPSVIVEPGVRTGVQLAID 99 
                 79*************************.***************************************************88999999************ PP

                 SGGGS-HHHHHHHHHHHHHCTTSEEEEEEESSEEEEEEEETTSEEEEEEEEE-HHHHHHHHHHCSSS----HHCCHHSC.SSSBSSHHHHHHHHHHHHH CS
  Pan_kinase 100 npkelGaDRwvaavaarellpgkpllvvdfGTAttfdavsadgeylGGlIaPGlalmleaLaektakLprvelakpaeaesvigknTveaiqsGilygl 198
                 npke+G+DR+v+ +aa+ l+ g p +vvdfGT t fd++s +ge+lGG+ aPG++++++aLa ++a+L++ve+akp +  svigknTve++qsG+++g+
  KIR62731.1 100 NPKEVGSDRVVNTLAAYTLF-GGPSIVVDFGTTTNFDVISGRGEFLGGAFAPGIEISFDALAARAAQLRKVEAAKP-R--SVIGKNTVECLQSGLYFGF 194
                 ******************88.66****************************************************9.6..9****************** PP

                 HHHHHHHHHH CS
  Pan_kinase 199 agliegiirr 208
                 ag++++i++r
  KIR62731.1 195 AGQVDRIVER 204
                 *******985 PP

>> CK2S  Casein Kinase 2 substrate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.2e-05      0.19      26      85 ..     155     215 ..     151     219 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.2e-05
        CK2S  26 lleslsnlaeqlqalqnvklygtp.lrdfpdlqerLrekqlealeevlakLrekleelqkv 85 
                  ++ l+  a+ql+ ++ +k  ++   + +++lq+ L +  + +++++ +++ e+l e++ v
  KIR62731.1 155 SFDALAARAAQLRKVEAAKPRSVIgKNTVECLQSGLYFGFAGQVDRIVERMTEELGEVRAV 215
                 5889999***********9887778999***************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1596.85
//
Query:       KIR62732.1  [L=502]
Description: lysyl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-67  228.0   0.0    1.8e-67  227.7   0.0    1.1  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    1.1e-12   47.7   0.2      2e-12   46.9   0.2    1.4  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    0.00089   18.8   0.2        0.1   12.1   0.0    2.4  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)
  ------ inclusion threshold ------
      0.018   15.0   0.2      0.052   13.5   0.2    1.7  1  Pyridox_ox_2     Pyridoxamine 5'-phosphate oxidase
       0.02   15.1   0.0      0.065   13.4   0.0    1.9  2  tRNA_anti_2      OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.7   0.0   5.1e-71   1.8e-67       1     313 [.     161     499 ..     161     500 .. 0.93

  Alignments for each domain:
  == domain 1  score: 227.7 bits;  conditional E-value: 5.1e-71
                  .CCHHHHTHHHHC.CSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEE CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   1 seelrlknryldl.rtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqi 97 
                  see r+++ry+dl  +++ ++++r+r+ +++++r++l+ +gf+e+etP+L+  +++++ar+F+++s++ + +++ L+++p+l+l++ +v+g+drvf+i
   KIR62732.1 161 SEEARVRQRYVDLiVRPQARQMVRTRAAAVRSLRDCLHGQGFVEVETPMLQLLHGGAAARPFVTHSNALSTDLY-LRIAPELFLKRAVVGGVDRVFEI 257
                  5899*****************************************************************99**9.*********************** PP

                  EEEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS-SS--HHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2  98 araFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrnskdlkkpfkrltykeaieklneigkdldkaderal 195
                  +r+FR+E +++++ + EF ++ea+ ++ +++ + +++ +l+++ +  v  +s + +++   r++ dl  +++ +t    ++++ +++  ++++  r  
   KIR62732.1 258 NRNFRNEGVDSSHSP-EFAMLEAYEAYGDYDTMASLTRNLVQEAAIAV-GGS-TVVTHADGREF-DLGGEWRSVTLFGVLSEALGEEVTVRTERAR-- 349
                  ***************.********************************.555.66777777766.99999*******9999977665545544444.. PP

                  HH.............................HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHCCHH. CS
                  xx.............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  tRNA-synt_2 196 vk.............................keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRiedpeeleeklkskgld. 263
                  +                                 + p+fv d+P+e++p+++ ++++ + l+e++Dl++ g+El+++++++ dp +++e+l ++    
   KIR62732.1 350 LVeyadkvglavdpkwgpgklaeelfeelvvPGLQAPTFVRDYPEETSPLTRAHRSE-PGLAEKWDLYVLGFELGTAYSELVDPVVQRERLVAQAQLa 446
                  44458999999999999999999999999999999**********************.9********************************9999888 PP

                  ....SSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 264 ....eeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                      +ea+  ++++l+a+eyG+pp gG+g+G+dRl+m l+g+  Ir++i+FP +
   KIR62732.1 447 argdDEAMRLDEDFLRAMEYGMPPAGGMGMGIDRLLMALTGL-GIRETILFPLV 499
                  99*9*************************************9.8********75 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.2   5.6e-16     2e-12       1      73 [.      67     143 ..      67     146 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 5.6e-16
                      EEEEEEEEEEEEEEETTEEEEEEEETT.EEEEEEEET.....HHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgt.griqvvlfr.....eeatklaenlkeGdvvrvtGrvkrrpggelelkveei 73 
                      V+v Grv+ +  r++gk++f++lrDg   ++q++l       e  ++++  ++ Gd+v+vtG+v ++++gel++ +e++
       KIR62732.1  67 VSVTGRVIFV--RNTGKLCFATLRDGDgTELQAMLSLdrvgaERLDDWKRLVDLGDHVGVTGEVITSRRGELSVLAEQW 143
                      89********..***************669***999999************************************9987 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   2.8e-05       0.1     103     130 ..     253     280 ..     249     308 .. 0.85
   2 !    4.0   0.2     0.008        29     209     228 ..     469     488 ..     456     494 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.8e-05
                   EEEEEEEEEBSST-SSSB-SEEEEEEEE CS
  tRNA-synt_2d 103 kiisigrvfRrdavDathlaeFhqvegl 130
                   +++ i+r fR++ vD++h++eF  +e  
    KIR62732.1 253 RVFEINRNFRNEGVDSSHSPEFAMLEAY 280
                   799*******************999975 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.008
                   SEEEEEEEEHHHHHHHHHT- CS
  tRNA-synt_2d 209 vsgfafGlGveRlamlkygi 228
                    ++ ++G+G++Rl m  +g+
    KIR62732.1 469 PPAGGMGMGIDRLLMALTGL 488
                   566789*********98875 PP

>> Pyridox_ox_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   1.5e-05     0.052      55      96 ..     303     341 ..     287     361 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.5e-05
                   T--ECEEEEEEEEEEE-SEGGEEE.EEEEEEEEEEEEE--HHH CS
  Pyridox_ox_2  55 gapvcvvvtevdglvlarsfnsln.yrSVvvrGraeevtdeee 96 
                   ++  + vvt++dg+ ++        +rSV+++G ++e   ee 
    KIR62732.1 303 AVGGSTVVTHADGREFDLG----GeWRSVTLFGVLSEALGEEV 341
                   444899*******999999....66*********998754444 PP

>> tRNA_anti_2  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.8e-05     0.065      16      92 ..      61     141 ..      46     143 .. 0.75
   2 ?   -3.2   0.0       2.8     1e+04      78      91 ..     277     290 ..     275     292 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.8e-05
  tRNA_anti_2  16 aelkkavwvrGeisnlkrkasghvYftLkD.ekakisavifrsraaklkft.....ledGmkVlvkgrlsvYeprGsyqlive 92 
                  ++  ++v v+G +  + r++ + ++ tL+D +  +++a++   r+ + + +     ++ G++V v+g++   ++rG++++ +e
   KIR62732.1  61 TATGDRVSVTGRVIFV-RNTGKLCFATLRDgDGTELQAMLSLDRVGAERLDdwkrlVDLGDHVGVTGEVIT-SRRGELSVLAE 141
                  5556789*********.545679*******66678999988877644332223456888*********965.78898888877 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.8
  tRNA_anti_2  78 lsvYeprGsyqliv 91 
                  l+ Ye++G+y  ++
   KIR62732.1 277 LEAYEAYGDYDTMA 290
                  688*****998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 3185.09
//
Query:       KIR62733.1  [L=117]
Description: nucleoid-associated protein Lsr2 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-38  130.8   0.2    2.4e-38  130.7   0.2    1.0  1  Lsr2      Lsr2


Domain annotation for each model (and alignments):
>> Lsr2  Lsr2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7   0.2   1.3e-42   2.4e-38       2     109 ..       5     115 ..       4     116 .. 0.96

  Alignments for each domain:
  == domain 1  score: 130.7 bits;  conditional E-value: 1.3e-42
        Lsr2   2 ArkvvvtlvDDldgseadetvefgldgveYeiDLseenaeklrdaLapyieaarrvggrkk...krrarrkaaaaasreqaaaiReWakengievserG 97 
                 A++++ +lvDDldg++adetv+f+ldgv+YeiDLs++naeklr++++py++++++vg+      +r+ar +  a+a+req++aiR+Wak++g e+s+rG
  KIR62733.1   5 AKQIIHKLVDDLDGGDADETVKFALDGVQYEIDLSATNAEKLREVFSPYVANGTKVGRGGVvvgGRAARGRGGATADREQNKAIRAWAKREGKEISDRG 103
                 99******************************************************98777899999999999************************** PP

        Lsr2  98 ripaevieaYea 109
                 rip+e++++++a
  KIR62733.1 104 RIPQEIVDEFHA 115
                 **********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 762.33
//
Query:       KIR62734.1  [L=839]
Description: NDP-hexose 4-ketoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-54  182.6   0.0    7.2e-52  175.9   0.0    2.5  2  AAA_2            AAA domain (Cdc48 subfamily)
    1.5e-36  124.3   8.4    1.9e-18   66.3   1.2    2.7  2  Clp_N            Clp amino terminal domain, pathogenicity isl
    3.3e-35  120.1   1.3    9.2e-35  118.7   1.3    1.8  1  AAA_lid_9        AAA lid domain
    7.8e-26   89.9   0.3    3.5e-25   87.9   0.3    2.3  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    1.1e-22   80.8   0.0    3.4e-12   46.9   0.0    2.7  2  AAA              ATPase family associated with various cellul
    2.6e-18   66.4   0.0    1.2e-11   44.8   0.0    3.0  2  AAA_5            AAA domain (dynein-related subfamily)
    5.1e-12   46.5   5.4    4.9e-06   27.0   1.6    4.4  2  AAA_16           AAA ATPase domain
      3e-10   40.5   0.8     0.0011   19.3   0.1    4.5  2  AAA_22           AAA domain
      2e-09   37.1   0.2    1.6e-06   27.7   0.1    3.7  2  TniB             Bacterial TniB protein
    3.7e-08   32.9   4.4    9.8e-08   31.5   4.4    1.8  1  UVR              UvrB/uvrC motif
    6.2e-08   32.5   0.1    0.00017   21.4   0.0    2.9  2  Sigma54_activat  Sigma-54 interaction domain
    4.4e-06   27.3   4.1      0.014   16.0   0.0    4.1  4  AAA_18           AAA domain
    1.7e-05   24.7   0.1       0.13   12.0   0.0    2.8  2  IstB_IS21        IstB-like ATP binding protein
    2.2e-05   24.5   3.0      0.053   13.4   0.1    3.9  4  ATPase_2         ATPase domain predominantly from Archaea
    6.9e-05   22.6   0.1        2.8    7.7   0.0    4.4  4  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00011   22.2   0.1       0.57   10.1   0.0    2.5  2  RsgA_GTPase      RsgA GTPase
    0.00015   21.8   0.0       0.21   11.6   0.0    2.8  2  AAA_14           AAA domain
    0.00022   21.4   1.0        1.1    9.5   0.0    4.2  4  AAA_33           AAA domain
    0.00027   21.3   0.0        1.5    9.3   0.0    2.8  2  RNA_helicase     RNA helicase
    0.00034   19.9   0.1          3    6.9   0.0    3.3  3  DUF815           Protein of unknown function (DUF815)
    0.00079   19.2   0.1       0.52   10.0   0.0    2.9  2  AAA_24           AAA domain
    0.00082   19.2   0.0       0.28   11.0   0.0    3.2  2  AAA_3            ATPase family associated with various cellul
     0.0014   18.6   0.0          2    8.4   0.0    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0017   17.8   0.0        5.2    6.4   0.0    3.5  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0029   17.1   0.0          1    8.8   0.0    3.0  3  AAA_7            P-loop containing dynein motor region
      0.005   17.1   0.6        3.8    7.7   0.0    3.3  3  AAA_28           AAA domain
     0.0054   16.7   0.0       0.31   10.9   0.0    2.5  2  NACHT            NACHT domain
     0.0066   16.2   0.0        3.4    7.4   0.0    2.6  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
     0.0082   16.4   0.0        3.1    8.0   0.0    2.7  2  Roc              Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
      0.011   15.8   0.0        2.6    8.0   0.0    3.6  3  ResIII           Type III restriction enzyme, res subunit
      0.015   15.7   0.0        0.6   10.4   0.1    3.2  2  AAA_19           AAA domain
      0.017   15.7   0.0        4.2    7.9   0.0    2.8  2  ABC_tran         ABC transporter
      0.021   14.6   0.0          3    7.6   0.0    2.4  2  AAA_29           P-loop containing region of AAA domain
      0.024   14.5   0.2         12    5.8   0.1    3.4  3  NTPase_1         NTPase
      0.026   13.7   0.2        8.8    5.4   0.0    2.7  2  TIP49            TIP49 P-loop domain
      0.028   13.7   0.0        2.8    7.1   0.0    2.7  2  Zeta_toxin       Zeta toxin
      0.035   13.7   0.1         13    5.3   0.0    3.4  3  AAA_25           AAA domain
      0.081   13.0   0.0          1    9.5   0.0    2.6  3  Torsin           Torsin
       0.92   10.0   4.1          4    7.9   0.3    3.3  3  AAA_23           AAA domain


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0       0.1        47       6      78 ..     209     287 ..     204     321 .. 0.70
   2 !  175.9   0.0   1.6e-54   7.2e-52       1     170 [.     541     713 ..     541     714 .. 0.98

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.1
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS.........EEEEETGG CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG.........ivllDEid 78 
                   l+g+ gvGkt + + l++ +  k e + + +d + ++   ++  lv+      ++  + ++           i+++DEi 
  KIR62734.1 209 PVLIGEPGVGKTAVVEGLSQKII-KGEVPETLKDKQLYTL--DLGALVAGSRYRGDFEERLKKVLkeirtrgdiILFIDEIH 287
                 5688999******9999999997.7777777777777777..5555655544444444443333345555668799999996 PP

  == domain 2  score: 175.9 bits;  conditional E-value: 1.6e-54
                 -----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG-------- CS
       AAA_2   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessg 87 
                 rp +s++++gp+gvGktel+kalae+lf ++e++li +d+se+      + +vsrl+gappgyvg++egG            +vl+DEi+K+hp     
  KIR62734.1 541 RPSGSFIFAGPSGVGKTELSKALAEFLF-GSEDALIQLDMSEFHD----RYTVSRLVGAPPGYVGYDEGGqltekvrrrpfsVVLFDEIEKAHP----- 629
                 6889************************.9***************....*********************************************..... PP

                 -----HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-S.......TTTTSGGG--HHHHHHTT--HHHHTT--E CS
       AAA_2  88 advSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrsk.......eeeeekkkeeveeelkkglipEllgRlpe 170
                       +V++ LLqile+g+ltd qgr vd+kn+++I+t+++g+++ +++   +       e++++ +k++v++elk++++pE+l+R+++
  KIR62734.1 630 ------DVFNTLLQILEDGRLTDGQGRIVDFKNTVIILTTNLGTRDVAKAVSLGfqasedsESNYDRMKQKVNDELKQHFRPEFLNRIDD 713
                 ......*******************************************888889****99999************************96 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   1.2   4.1e-21   1.9e-18       1      53 []      16      68 ..      16      68 .. 0.99
   2 !   61.6   1.1   1.2e-19   5.7e-17       3      52 ..      93     142 ..      91     143 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 4.1e-21
                HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHHC CS
       Clp_N  1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekllg 53
                Aqe+A+ l+h+yi+tEH+Ll+L+ e++G+aa++L+ +G++l+ +r+++e+++g
  KIR62734.1 16 AQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVRQQVEEIIG 68
                9*************************************************997 PP

  == domain 2  score: 61.6 bits;  conditional E-value: 1.2e-19
                 HHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHH CS
       Clp_N   3 elAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekll 52 
                 ++A++lgh+yi+tEH+Ll+L++e++G+aa++L k+G+dl+++r+++ +ll
  KIR62734.1  93 REALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLL 142
                 79********************************************9987 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   1.3     2e-37   9.2e-35       2     103 ..     349     450 ..     348     451 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.7 bits;  conditional E-value: 2e-37
   AAA_lid_9   2 eeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekelaklekekealekeeekekaerl 100
                  ++tieiL+gl+++ye+hH+v+i+d+al+aa++l++rYisdrflPdkAIDl+Dea+ar+r+++ + p +l+++++++a+++++ke++++++++e+a++l
  KIR62734.1 349 LAHTIEILKGLRDRYEAHHRVSITDAALVAAATLADRYISDRFLPDKAIDLIDEAGARMRIRRMTAPPDLRDFDERIAQVRRDKESAIDAQDFERAAQL 447
                 578***********************************************************************************************9 PP

   AAA_lid_9 101 kel 103
                 +++
  KIR62734.1 448 RDK 450
                 986 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.3   7.6e-28   3.5e-25       1      81 []     720     800 ..     720     800 .. 0.97

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 7.6e-28
                    SCHHHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSSTTSEEEE CS
  ClpB_D2-small   1 LtkeelkkIvdlalkklekrlkergvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegdtvrv 81 
                    L + e+ +Ivd++++++e++l+++++ le+td+a+++la+kg+dp+ GARpLrr+iqr ied l+e il++el++g+ v v
     KIR62734.1 720 LRQTEILSIVDIMIARIETQLRNKDMGLELTDNAKKYLAKKGFDPVLGARPLRRTIQRDIEDNLSERILFNELTPGQIVVV 800
                    67899**********************************************************************998875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   7.4e-15   3.4e-12       2     112 ..     210     326 ..     209     344 .. 0.79
   2 !   31.0   0.0   6.1e-10   2.8e-07       2     112 ..     547     667 ..     546     679 .. 0.83

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 7.4e-15
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 +l+G pG+GKT++++ + +++          + +++++++  l+  s y g+ e+++++++ke+++     ilfiDEi+ l+++    + e + ++++ 
  KIR62734.1 210 VLIGEPGVGKTAVVEGLSQKIikgevpetlkDKQLYTLDLGALVagSRYRGDFEERLKKVLKEIRTRG-DIILFIDEIHTLVGAG---AAEGAIDAASI 304
                 599*****************7665555545447789999999887677******************98.9***************...88899999999 PP

                 HHHHHHHTTTSSSTEEEEEEESS...G CS
         AAA  89 Llteldgvkkkeskvivigatnr...p 112
                 L ++l + +        igat+     
  KIR62734.1 305 LKPMLARGEL-----QTIGATTLdeyR 326
                 9999998877.....478888764443 PP

  == domain 2  score: 31.0 bits;  conditional E-value: 6.1e-10
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS............STTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeeer 84 
                 ++ Gp G+GKT l ka+a+ l   +  ++++++se+ +             yvg  e    +l +++++   p s++++DEi++ +++           
  KIR62734.1 547 IFAGPSGVGKTELSKALAEFLfgsEDALIQLDMSEFHDRytvsrlvgappgYVGYDEGG--QLTEKVRRR--PfSVVLFDEIEKAHPDV---------- 631
                 799*****************86545789*********889****999999987766654..455555554..66***********9999.......... PP

                 HHHHHHHHHHHTTTS........SSTEEEEEEESS.G CS
         AAA  85 vvnqLlteldgvkkk........eskvivigatnr.p 112
                   n+Ll+ l++ +           +++++i++tn   
  KIR62734.1 632 -FNTLLQILEDGRLTdgqgrivdFKNTVIILTTNLgT 667
                 .**********999999*****955589999999754 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     4e-06    0.0018       3      76 ..     210     288 ..     208     339 .. 0.81
   2 !   44.8   0.0   2.6e-14   1.2e-11       2     126 ..     546     669 ..     545     680 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4e-06
                 EEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHH...H--B--.........--------G-SE.EEEESGGG CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nreveyvqltrdtteedl...kgrreikngttslvdsplvraaregei.lvlDEver 76 
                 +L+G+pG+gK+ ++e l++ + + ev + +  +++ + dl   + + +++++ +++ +++l++  ++g+i l++DE+++
  KIR62734.1 210 VLIGEPGVGKTAVVEGLSQKIiKGEVPETLKDKQLYTLDLgalVAGSRYRGDFEERLKKVLKEIRTRGDIiLFIDEIHT 288
                 79*******************9888888888888877775111555666566677777777765558886258999986 PP

  == domain 2  score: 44.8 bits;  conditional E-value: 2.6e-14
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--............--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreik...ngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrl 94 
                 ++  Gp+G+gK+el++ la++l ++e   +ql  +   +  + +r +    +     + + l++++r    +++++DE+e+a+++v+n+Ll++le+ rl
  KIR62734.1 546 FIFAGPSGVGKTELSKALAEFLfGSEDALIQLDMSEFHDRYTVSRLVGappGYVGYDEGGQLTEKVRrrPFSVVLFDEIEKAHPDVFNTLLQILEDGRL 644
                 6889*******************77777777655444444444444445536667777899*****987789*************************** PP

                 E..-SSSE.EE---......-EEEEEESS--.- CS
       AAA_5  95 lleeggel.vkaknddllerfrviatanpldrs 126
                    +g+++ v++kn      + +i t+n   r+
  KIR62734.1 645 T--DGQGRiVDFKN------TVIILTTNLGTRD 669
                 *..55555055555......7888888876655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   1.6   1.1e-08   4.9e-06       2      51 ..     187     233 ..     186     480 .. 0.87
   2 !   15.0   0.0   5.3e-05     0.024       2      50 ..     515     569 ..     514     594 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.1e-08
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd 51 
                 ++GRe+e+e++ ++l+r  ++ p   +l+Ge+GvGK+++v+ l + + k 
  KIR62734.1 187 VIGREKEIERVMQVLSRRTKNNP---VLIGEPGVGKTAVVEGLSQKIIKG 233
                 78**************8888766...899***********9999877655 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 5.3e-05
      AAA_16   2 lvGReeeleqLlsalervrsgrp......elvllsGesGvGKsslvrellralek 50 
                 ++G e+ ++++  a++r+r+g        ++ ++ G+sGvGK+ l ++l++ l +
  KIR62734.1 515 VIGQEDAVKAVSKAIRRTRAGLKdpkrpsGSFIFAGPSGVGKTELSKALAEFLFG 569
                 68999999999999999999977778999*****************999986655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   2.4e-06    0.0011       4     104 ..     205     290 ..     202     318 .. 0.87
   2 !   13.9   0.1   0.00011     0.051       6     118 ..     544     641 ..     540     670 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.4e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh 102
                 t++  v++Ge+G+GKT +++ l ++             +++ ++p+  + k+l++  l al  +  + r++ ee l+++ + +r+r++  +l iDE++ 
  KIR62734.1 205 TKNNPVLIGEPGVGKTAVVEGLSQK-------------IIKGEVPETLKDKQLYTLDLGALVAGSRY-RGDFEERLKKVLKEIRTRGD-IILFIDEIHT 288
                 778889*************999887.............69999999999999999999999987777.9*******************.*********9 PP

      AAA_22 103 lr 104
                 l 
  KIR62734.1 289 LV 290
                 85 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 0.00011
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr 104
                 g+ +  G+sG+GKT l + l+e l         ++e ++++l  s+     +  + r +g +  +      +   +l++ +r+r   ++++ DE+++  
  KIR62734.1 544 GSFIFAGPSGVGKTELSKALAEFLF--------GSEDALIQLDMSE--FHDRYTVSRLVGAPPGY---VGYDEGGQLTEKVRRRPF-SVVLFDEIEKA- 627
                 677889*****************94........5555555554444..34567788888888888...666777889999999999.99999999999. PP

      AAA_22 105 seealeeLrsllnl 118
                 +++++++L ++l++
  KIR62734.1 628 HPDVFNTLLQILED 641
                 99999999888775 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1   3.4e-09   1.6e-06      22     184 ..     193     344 ..     189     347 .. 0.87
   2 ?    1.8   0.0       0.3   1.4e+02      17      53 ..     526     561 ..     506     566 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 3.4e-09
        TniB  22 rLeeLleypkrkrmpnlllvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekrlyaaiLealgaplkararvskleqqvlrllrelkv 120
                 ++e+++++ +r   +n +l+G++ +GKt++ve  ++             +++  ++p++ ++k+ly+  L al a  + r + ++  ++vl+ +r+ + 
  KIR62734.1 193 EIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLSQ-------------KIIKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGD 278
                 567778887777778888999999999999886654.............4788899**********************************999999999 PP

        TniB 121 rvLiiDEihnll.agsarkqreflnalksLgnelkipivlvGt.eealralrtDpqlasRFepial 184
                  +L iDEih l+ ag a+    +  +lk +  + ++  +++ t +e  ++l++D+ l++RF+pi++
  KIR62734.1 279 IILFIDEIHTLVgAGAAEGAIDAASILKPMLARGELQTIGATTlDEYRKHLEKDAALERRFQPIQV 344
                 9*********984678888889999**************99983456679*************986 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.3
        TniB  17 keilerLeeLleypkrkrmpnlllvGdsnnGKtmive 53 
                  ++++r ++ l+ pkr    + +++G+s +GKt + +
  KIR62734.1 526 SKAIRRTRAGLKDPKRPS-GSFIFAGPSGVGKTELSK 561
                 455556666677777766.788889999999999876 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   4.4   2.1e-10   9.8e-08       1      33 [.     422     454 ..     422     457 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 2.1e-10
         UVR   1 kklikeLeeemeeAaenedFEkAAklRDqinal 33 
                 +++i ++++++e A++++dFE+AA+lRD++++l
  KIR62734.1 422 DERIAQVRRDKESAIDAQDFERAAQLRDKEKQL 454
                 689***************************988 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0052       2.4       2      48 ..     188     232 ..     187     320 .. 0.69
   2 !   21.4   0.0   3.6e-07   0.00017       8     140 ..     529     661 ..     515     678 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0052
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTT CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskr 48 
                      ig++++++++++ +++ +k + +v + Ge G+GK+ + + + ++  +
       KIR62734.1 188 IGREKEIERVMQVLSRRTK-NNPV-LIGEPGVGKTAVVEGLSQKIIK 232
                      7788888888888877544.3455.56**********9988875443 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 3.6e-07
                      HHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEE CS
  Sigma54_activat   8 lkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfL 99 
                      ++++++ +k   + + s +  G sG+GK+ l++a+ e    +e  +++++++++ ++   s+L G   G + G ++  +   ++++   +++++
       KIR62734.1 529 IRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALAEFLFGSEDALIQLDMSEFHDRYTVSRLVGAPPG-YVGYDEGGQltEKVRRRPFSVVLF 621
                      333333333444444788999*********************************************999.8888776665578889999***** PP

                      ETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEE CS
  Sigma54_activat 100 DeigelplelQekLlrvlqegevervGsskeikvdvriiaa 140
                      Dei++  +++ + Ll++l++g+++  G+ + ++++  +i  
       KIR62734.1 622 DEIEKAHPDVFNTLLQILEDGRLTD-GQGRIVDFKNTVIIL 661
                      *********************9886.555555544444433 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0027       1.2       3      44 ..     211     251 ..     210     291 .. 0.67
   2 ?   -1.8   0.2       9.5   4.3e+03      69      97 ..     460     494 ..     422     518 .. 0.55
   3 !   16.0   0.0     3e-05     0.014       2     100 ..     547     662 ..     547     668 .. 0.53
   4 ?   -1.6   0.0       8.2   3.8e+03      24      80 ..     745     801 ..     735     808 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0027
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe 44 
                 l G pGvGKt + + Ls++  +  ++ +++k+++l++ +  +
  KIR62734.1 211 LIGEPGVGKTAVVEGLSQKI-IKGEVPETLKDKQLYTLDLGA 251
                 8899************9994.466666667776766666655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 9.5
      AAA_18  69 s...aleegknlvidghlaeleseaakdikk...v 97 
                 +    +  g+  v++ +  e + e +  + +   +
  KIR62734.1 460 QrekEWKAGDLDVVSEVDDEQIAEVLGNWTGipvY 494
                 13344555555566655555555544444444433 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 3e-05
      AAA_18   2 lltGtpGvGKttlakeLskrl.gf..............gvnlrdvakenglllevdpe.....aldeskrldedkldklldaleenssaleegknlvid 80 
                 + +G++GvGKt+l+k+L++ l g+                         +++     +      +de  +l e+++ + ++ +       e++++ v+ 
  KIR62734.1 547 IFAGPSGVGKTELSKALAEFLfGSedaliqldmsefhdR----------YTVSRLVGAppgyvGYDEGGQLTEKVRRRPFSVVLFDE--IEKAHPDVFN 633
                 579**************9988555665543333333221..........22222222234444444444444444444444333332..2445666666 PP

      AAA_18  81 ghlaeleseaakdikk.........vvLt 100
                  +l+ le+ +++d+++         ++Lt
  KIR62734.1 634 TLLQILEDGRLTDGQGrivdfkntvIILT 662
                 66666666666666666555555555555 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 8.2
      AAA_18  24 fgvnlrdvakenglllevdpe..aldeskrldedkldklldaleenssaleegknlvid 80 
                 +g +l+d+ak+     ++dp   a +  + +++d  d+l++ +  n   l+ g+ +v+d
  KIR62734.1 745 MGLELTDNAKKYLAKKGFDPVlgARPLRRTIQRDIEDNLSERILFNE--LTPGQIVVVD 801
                 47788888888777777777777777777778888777777777775..5777777776 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00028      0.13      45     107 ..     204     270 ..     188     291 .. 0.71
   2 !    9.4   0.0    0.0018      0.82      49      69 ..     545     565 ..     526     576 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00028
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavr....aglsvlfvrvedLveelkrarrdgklaralkrll 107
                 ++k+n vl+G +GvGK+ +   l+++ ++    + l+   + + dL + ++  r  g ++++lk++l
  KIR62734.1 204 RTKNNPVLIGEPGVGKTAVVEGLSQKIIKgevpETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVL 270
                 6899**********************99832222334444556677777777777777777776655 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0018
   IstB_IS21  49 nivllGpsGvGKshlaialgv 69 
                 ++++ GpsGvGK+ l+ al+ 
  KIR62734.1 545 SFIFAGPSGVGKTELSKALAE 565
                 6899**************985 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   0.00011     0.053       4      38 ..     190     224 ..     188     249 .. 0.90
   2 ?    5.3   0.0     0.034        16     101     134 ..     261     293 ..     249     310 .. 0.81
   3 ?    3.2   0.0      0.16        73      24      45 ..     546     568 ..     538     641 .. 0.78
   4 ?   -2.6   0.0         9   4.2e+03      56      83 ..     679     708 ..     660     747 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00011
    ATPase_2   4 RekelkeleeilerepneiyfiYGpegsGKtaLlk 38 
                 Reke++++ ++l+r +++  ++ G  g+GKta++ 
  KIR62734.1 190 REKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVE 224
                 ********************************986 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.034
    ATPase_2 101 lvfkaielllekikkkgkkiiiiiDelqklidlg 134
                 + ++ ++++l++i+ +g  ii++iDe+  l+  g
  KIR62734.1 261 DFEERLKKVLKEIRTRGD-IILFIDEIHTLVGAG 293
                 567889999999998876.********9999444 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.16
    ATPase_2  24 fiY.GpegsGKtaLlkeiienle 45 
                 fi+ Gp g+GKt L k ++e l 
  KIR62734.1 546 FIFaGPSGVGKTELSKALAEFLF 568
                 55559*********999988764 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 9
    ATPase_2  56 alreesiskldefieeeeekkklekal....g 83 
                 + +e+s+s++d++  +++++++l++++    +
  KIR62734.1 679 QASEDSESNYDRM--KQKVNDELKQHFrpefL 708
                 4556666777776..55555555555544442 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.067        31      34      55 ..     207     228 ..     180     255 .. 0.73
   2 ?    4.3   0.0     0.064        30      77      96 ..     268     289 ..     256     298 .. 0.75
   3 !    7.7   0.0    0.0061       2.8       9      55 ..     515     565 ..     507     571 .. 0.73
   4 ?   -1.0   0.0       2.9   1.3e+03      86     113 ..     617     644 ..     608     652 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.067
      RuvB_N  34 dhvllyGpPGlGkttlakiiak 55 
                 +  +l+G PG+Gkt++ + +++
  KIR62734.1 207 NNPVLIGEPGVGKTAVVEGLSQ 228
                 334688********99776655 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.064
      RuvB_N  77 alltnleek.d.vlfideihrl 96 
                  +l++++++ d +lfideih l
  KIR62734.1 268 KVLKEIRTRgDiILFIDEIHTL 289
                 56666654324379******98 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0061
      RuvB_N   9 yigqekvkeklkifieaak....kreealdhvllyGpPGlGkttlakiiak 55 
                  igqe+  + ++ +i+ ++      +++    +++Gp G+Gkt l+k +a+
  KIR62734.1 515 VIGQEDAVKAVSKAIRRTRaglkDPKRPSGSFIFAGPSGVGKTELSKALAE 565
                 678877777777777655411114466778899*************99987 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.9
      RuvB_N  86 dvlfideihrlsraveevlysamedfrl 113
                  v++ dei + ++ v + l + +ed rl
  KIR62734.1 617 SVVLFDEIEKAHPDVFNTLLQILEDGRL 644
                 68889*******************9876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0022         1      83     122 ..     190     229 ..     169     244 .. 0.71
   2 !   10.1   0.0    0.0012      0.57     100     120 ..     544     564 ..     495     570 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0022
                  -TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  83 saktkegleelkellkdktsvlvGqSGvGKStLinallpe 122
                  ++k+ e + ++ ++ +++  vl+G+ GvGK+++++ l ++
   KIR62734.1 190 REKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLSQK 229
                  44444455555555556678**************999876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0012
                  SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinall 120
                     +++G+SGvGK+ L +al+
   KIR62734.1 544 GSFIFAGPSGVGKTELSKALA 564
                  6789************99986 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00045      0.21       6      78 ..     210     291 ..     206     344 .. 0.71
   2 ?    7.0   0.0     0.012       5.6       6      90 ..     547     642 ..     543     649 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00045
      AAA_14   6 vitGaRrvGKTtllkqlikell.......vkkesilyinldderd..kkla.dpekllelileklkeekktylflDEiqevpe 78 
                 v+ G   vGKT +++ l ++ +        k+++   ++l       + ++ d+e+ l+ +l++++++++ +lf+DEi+ + +
  KIR62734.1 210 VLIGEPGVGKTAVVEGLSQKIIkgevpetLKDKQLYTLDLGALVAgsR-YRgDFEERLKKVLKEIRTRGDIILFIDEIHTLVG 291
                 56677789*****99999888877767666666666666665444432.333666555555555555699*********9833 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.012
      AAA_14   6 vitGaRrvGKTtllkqlikellvkkesilyinldderd....kkladpe...........kllelileklkeekktylflDEiqev.pewekalkslvd 88 
                 +  G+  vGKT l k l++ l+ +++  + +++ + +d    +     +           +    + ek++++  +++++DEi ++ p+++++l ++++
  KIR62734.1 547 IFAGPSGVGKTELSKALAEFLFGSEDALIQLDMSEFHDrytvS-----RlvgappgyvgyDEGGQLTEKVRRRPFSVVLFDEIEKAhPDVFNTLLQILE 640
                 668999********99997777777777777777766633220.....122334344443222333333333345679*****9875888888888888 PP

      AAA_14  89 eg 90 
                 +g
  KIR62734.1 641 DG 642
                 77 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       4.5   2.1e+03      33      74 ..      59     103 ..      37     105 .. 0.81
   2 ?    5.7   0.0     0.033        15       4      22 ..     211     229 ..     210     277 .. 0.90
   3 ?    0.2   0.8       1.7   7.8e+02      27     127 ..     328     437 ..     311     450 .. 0.60
   4 !    9.5   0.0    0.0023       1.1       3      22 ..     547     566 ..     546     640 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 4.5
      AAA_33  33 lrrrlfg...tdqqsktdytrvldrlyqilnelarkalsagrnvi 74 
                 +r+++++   ++qq ++  + +++r+++ l+  +r+al+ g n+i
  KIR62734.1  59 VRQQVEEiigQGQQAPSGHIPFTPRAKKVLELSLREALQLGHNYI 103
                 5555555555888888899999999****************9998 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.033
      AAA_33   4 lvGlpGsGKstlaerllkk 22 
                 l+G pG+GK+ ++e+l +k
  KIR62734.1 211 LIGEPGVGKTAVVEGLSQK 229
                 89*************9876 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.7
      AAA_33  27 llssdtlrrrlfg...tdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrrer...........arflklarrlgvpvrivvvetdeet. 110
                 +l++d++++r f     +++        l ++++il++l +++ ++ r  i+da ++ +++            ++ + l  ++g++ ri  +++++++ 
  KIR62734.1 328 HLEKDAALERRFQpiqVGEP-------SLAHTIEILKGLRDRYEAHHRVSITDAALVAAATLadryisdrflpDKAIDLIDEAGARMRIRRMTAPPDLr 419
                 55566666655543322222.......233456666666666666666666666655544444444444477788888888999988886666666541 PP

      AAA_33 111 .lkeRlakRaangddrse 127
                    eR+a+  ++++++++
  KIR62734.1 420 dFDERIAQVRRDKESAID 437
                 157888876665555443 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.0023
      AAA_33   3 llvGlpGsGKstlaerllkk 22 
                 ++ G++G+GK+ l++ l++ 
  KIR62734.1 547 IFAGPSGVGKTELSKALAEF 566
                 899*************9964 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0046       2.1       3      35 ..     211     245 ..     210     254 .. 0.77
   2 !    9.3   0.0    0.0032       1.5       2      23 ..     547     568 ..     546     592 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0046
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl..klkkkdsvy 35 
                   l G++g+GK+ +++ L++++ k    ++ k++++y
    KIR62734.1 211 LIGEPGVGKTAVVEGLSQKIIKGEvpETLKDKQLY 245
                   78****************99954434555555555 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0032
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   ++ Gpsg+GK+ l+k La+ l 
    KIR62734.1 547 IFAGPSGVGKTELSKALAEFLF 568
                   689*************887665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0066         3      42      78 ..     195     231 ..     176     252 .. 0.82
   2 ?    2.3   0.0      0.17        78      51      94 ..     541     584 ..     495     596 .. 0.74
   3 ?    6.3   0.0      0.01       4.6     185     232 ..     710     761 ..     681     764 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0066
      DUF815  42 enteqfleglpannvLLwGarGtGKSslvkallneya 78 
                 e + q l+ ++ nn +L+G+ G+GK ++v  l +++ 
  KIR62734.1 195 ERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLSQKII 231
                 445677888899999***************9998875 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.17
      DUF815  51 lpannvLLwGarGtGKSslvkallneyaeegLrlievekedlke 94 
                 +p+   ++ G  G+GK  l kal + +  ++ +li+++ ++ ++
  KIR62734.1 541 RPSGSFIFAGPSGVGKTELSKALAEFLFGSEDALIQLDMSEFHD 584
                 467788999***************99999999999998888776 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.01
      DUF815 185 RFGlwlgFykldqeeYleiveklakklglelek....eeleeeAlewalerg 232
                 R   ++ F++l q+e l+iv+ ++++ +++l++     el+++A ++ +++g
  KIR62734.1 710 RIDDTIVFHQLRQTEILSIVDIMIARIETQLRNkdmgLELTDNAKKYLAKKG 761
                 5556899********************9999885555567777877777665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0      0.02       9.4       3      22 ..     207     226 ..     205     285 .. 0.89
   2 !   10.0   0.0    0.0011      0.52       7     159 ..     548     702 ..     544     723 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.02
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                 ++ +++G++g+GKT ++  l
  KIR62734.1 207 NNPVLIGEPGVGKTAVVEGL 226
                 56699*********998877 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0011
      AAA_24   7 iyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel..................aaeladyktlviDtideleelclaevir 87 
                   Gpsg+GKT l k l  ++lf   ++ l +ld  +f d  ++         l                  +   ++++++ +D i+++   +++ + +
  KIR62734.1 548 FAGPSGVGKTELSKAL-AEFLFGSEDA-LIQLDMSEFHDRYTVSR-------LvgappgyvgydeggqlteKVRRRPFSVVLFDEIEKAHPDVFNTLLQ 637
                 67**************.8887765555.87888888775543333.......14445555777888888877788899999999999999999999888 PP

      AAA_24  88 qnekaeskedkgdgkG.ygelaeefrrllkklqelrk.nvifiahektrkdedpegeakytrlepklgkktane 159
                   e+++      dg+G  ++ ++ ++ l ++l   +    +  + +  +  e++     y+r+++k+++  ++ 
  KIR62734.1 638 ILEDGRLT----DGQGrIVDFKNTVIILTTNLGTRDVaKAVSLGFQASEDSESN-----YDRMKQKVNDELKQH 702
                 88885554....567778888888877777766555554444444444444433.....667777777666555 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.13        59       4      23 ..     211     230 ..     209     237 .. 0.87
   2 !   11.0   0.0   0.00062      0.28      63     109 ..     616     663 ..     546     670 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.13
       AAA_3   4 legvPGlaktllvkalakal 23 
                 l g PG++kt +v+ l++++
  KIR62734.1 211 LIGEPGVGKTAVVEGLSQKI 230
                 6789***********99876 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00062
       AAA_3  63 anllladeinrappktqsalleameerqvtve.gethklpepflvlat 109
                  +++l dei++a p +  +ll+++e+ ++t + g+  +++++ ++l+t
  KIR62734.1 616 FSVVLFDEIEKAHPDVFNTLLQILEDGRLTDGqGRIVDFKNTVIILTT 663
                 3699*************************9751455666666666665 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0044         2       4      43 ..     191     230 ..     188     237 .. 0.84
   2 !    7.5   0.0    0.0083       3.8       6      43 ..     521     567 ..     516     574 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0044
                 HHHHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE   4 eeetealgkklakalgdvilLeGdLGaGKTtlvrglakal 43 
                 e+e+e++ + l + +++  +L G+ G+GKT+ v gl +++
  KIR62734.1 191 EKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLSQKI 230
                 6788888888988888899****************99986 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0083
                 HHHHHHHHHHHCH...TEE.......EEEEESTTSSHHHHHHHHHHHT CS
        TsaE   6 etealgkklakal...gdv.......ilLeGdLGaGKTtlvrglakal 43 
                 +++a+ k++ ++    +         +++ G+ G+GKT l+++la+ l
  KIR62734.1 521 AVKAVSKAIRRTRaglK-DpkrpsgsFIFAGPSGVGKTELSKALAEFL 567
                 55555555555333331.03444555999***************9865 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.023        10      12      50 ..     195     234 ..     183     256 .. 0.69
   2 ?    6.4   0.0     0.011       5.2      24      47 ..     545     568 ..     513     595 .. 0.81
   3 ?    1.4   0.0      0.37   1.7e+02     109     157 ..     618     664 ..     601     721 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.023
  Mg_chelatase  12 kralei.aaaGgHnlllvGppGsGKtmlakrlpsllppls 50 
                   +r++++ +   + n +l+G pG GKt + + l++ + + +
    KIR62734.1 195 ERVMQVlSRRTKNNPVLIGEPGVGKTAVVEGLSQKIIKGE 234
                   4555541445667889***********9998876555555 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.011
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllp 47 
                   +++++Gp+G GKt l k+l++ l 
    KIR62734.1 545 SFIFAGPSGVGKTELSKALAEFLF 568
                   689****************98875 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.37
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamN 157
                   v+++DE+ + + +v+++L + ledg++t  +  + v+f  ++ +++++N
    KIR62734.1 618 VVLFDEIEKAHPDVFNTLLQILEDGRLTDGQ-GRIVDFK-NTVIILTTN 664
                   7889*********************987433.3334554.334455555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0022         1      32      57 ..     205     230 ..     191     243 .. 0.76
   2 ?    4.4   0.0     0.053        24      35      61 ..     545     571 ..     536     593 .. 0.75
   3 ?   -1.5   0.0       3.3   1.5e+03      60      97 ..     669     706 ..     656     713 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0022
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkl 57 
                  k++ +l+G+ G+GKt++++ l +k+
  KIR62734.1 205 TKNNPVLIGEPGVGKTAVVEGLSQKI 230
                 45567899***********9988876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.053
       AAA_7  35 pvllvGptGtGKtviikdllkkldkek 61 
                 ++++ Gp+G+GKt + k l + l  ++
  KIR62734.1 545 SFIFAGPSGVGKTELSKALAEFLFGSE 571
                 5789*********99998877665554 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 3.3
       AAA_7  60 ekylsltinfsaqtsanqlqdiiesklekrrkgvygPp 97 
                 +  + +++ f+a+ ++++  d +++k++   k+ + P 
  KIR62734.1 669 DVAKAVSLGFQASEDSESNYDRMKQKVNDELKQHFRPE 706
                 5667889999999***************9999999996 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.034        16       3      22 ..     210     229 ..     208     241 .. 0.83
   2 ?   -1.2   0.3       4.6   2.1e+03      72      95 ..     366     389 ..     310     451 .. 0.55
   3 !    7.7   0.0    0.0084       3.8       2      21 ..     546     565 ..     545     589 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.034
      AAA_28   3 vitGgestGKTtlleaLaar 22 
                 v++G ++ GKT ++e L+++
  KIR62734.1 210 VLIGEPGVGKTAVVEGLSQK 229
                 89***************987 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 4.6
      AAA_28  72 ankvlfcDrglldtlaYaraygge 95 
                   +v + D  l++ ++ a++y  +
  KIR62734.1 366 HHRVSITDAALVAAATLADRYISD 389
                 455666666666666555555443 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0084
      AAA_28   2 ivitGgestGKTtlleaLaa 21 
                 +++ G+++ GKT l++aLa+
  KIR62734.1 546 FIFAGPSGVGKTELSKALAE 565
                 5799**************97 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00068      0.31       4      31 ..     210     237 ..     209     253 .. 0.88
   2 ?    2.9   0.0       0.2        93       4      22 ..     547     565 ..     545     580 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00068
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpq 31 
                 +l Ge+G+GKT+ +++l +++ +g+ p+
  KIR62734.1 210 VLIGEPGVGKTAVVEGLSQKIIKGEVPE 237
                 689******************9999886 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.2
                 EEEC-TTTCHHHHHHHHHH CS
       NACHT   4 ilqGeaGsGKTtLlqklal 22 
                 i  G++G+GKT L + la+
  KIR62734.1 547 IFAGPSGVGKTELSKALAE 565
                 678**********999886 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0073       3.4      17      47 ..     541     571 ..     520     581 .. 0.88
   2 ?    6.0   0.0     0.021       9.6      97     129 ..     609     641 ..     601     664 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0073
  DNA_pol3_delta2  17 rlahayLfeGdegigkkelalnlakallcee 47 
                      r + +++f+G++g+gk el ++la+ l+ +e
       KIR62734.1 541 RPSGSFIFAGPSGVGKTELSKALAEFLFGSE 571
                      667799*******************999876 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.021
  DNA_pol3_delta2  97 rkpreskkkiiiiedaekmtksAaNalLktlEE 129
                      +k r     +++ +++ek ++   N+lL++lE+
       KIR62734.1 609 EKVRRRPFSVVLFDEIEKAHPDVFNTLLQILED 641
                      5556666789**********************7 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0068       3.1       3      29 ..     210     236 ..     209     247 .. 0.82
   2 ?    5.4   0.0     0.045        21       3      25 ..     547     569 ..     545     589 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0068
                 EEESSTTSSHHHHHHCHCT-CCC-EEE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekek 29 
                 vl+G+ gvGKt  ++ + ++ ++ +  
  KIR62734.1 210 VLIGEPGVGKTAVVEGLSQKIIKGEVP 236
                 79************9998887766555 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.045
                 EEESSTTSSHHHHHHCHCT-CCC CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfs 25 
                 ++ G sgvGKt l k + e  f 
  KIR62734.1 547 IFAGPSGVGKTELSKALAEFLFG 569
                 688***********999876664 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.62   2.9e+02      11      47 ..     193     229 ..     188     239 .. 0.76
   2 ?    0.6   0.0       1.1   5.1e+02     129     148 ..     274     293 ..     254     308 .. 0.66
   3 ?    8.0   0.0    0.0056       2.6      10      51 ..     527     570 ..     515     576 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.62
                 HHHHHT......TTSEEEEEESTTSTHHHHHHHHHHH CS
      ResIII  11 aienlleklkskrdkrglikmaTGtGKTlvaaklier 47 
                  ie++++ l+ + +++ ++  + G+GKT v   l ++
  KIR62734.1 193 EIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLSQK 229
                 5677777777666778889999******998666655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.1
                 HTTT-SEEEEETGGGTTS.T CS
      ResIII 129 lrdrfdviiiDEaHrlgakk 148
                 +     +++iDE H l ++ 
  KIR62734.1 274 RTRGDIILFIDEIHTLVGAG 293
                 333444899*****998854 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0056
                 HHHHHHT.......TTS..EEEEEESTTSTHHHHHHHHHHHH-S. CS
      ResIII  10 eaienlleklks.krdk..rglikmaTGtGKTlvaaklierllkk 51 
                 +ai+++++ lk+ kr     ++++ + G+GKT ++ +l+e l+ +
  KIR62734.1 527 KAIRRTRAGLKDpKR-PsgSFIFAGPSGVGKTELSKALAEFLFGS 570
                 455555555554433.246889************99998887765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1    0.0013       0.6      10      68 ..     206     272 ..     198     480 .. 0.76
   2 ?    0.9   0.0       1.1   5.1e+02      12      32 ..     545     565 ..     536     577 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0013
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkp........eeillvaftgrAakelrerlaalgae 68 
                 +++ ++++ pG GKT v+++  + +++ +  +          ++ ++   +r     +erl+++++e
  KIR62734.1 206 KNNPVLIGEPGVGKTAVVEGLSQKIIKGEVPETlkdkqlytLDLGALVAGSRYRGDFEERLKKVLKE 272
                 5667899************999988887633325554444434444444555566666666666666 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 1.1
      AAA_19  12 vllvtaGpGtGKTrvlkhiva 32 
                  ++  ++ G GKT++ k+  +
  KIR62734.1 545 SFIFAGPSGVGKTELSKALAE 565
                 44555566*****98777665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.086        40      15      42 ..     210     235 ..     201     276 .. 0.81
   2 ?    7.9   0.0    0.0092       4.2      15      51 ..     547     584 ..     541     682 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.086
                 EEEESTTSSHHHHHHHHTTSS--SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagllkpteGei 42 
                 +++Ge G GK+ +++ l+++    +Ge+
  KIR62734.1 210 VLIGEPGVGKTAVVEGLSQKII--KGEV 235
                 79************99998875..4665 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0092
                 EEEESTTSSHHHHHHHHTTSS--SEEE.EEETTCEGGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagllkpteGe.illdgkdlke 51 
                  + G++G GK+ L k+la+ l   e+  i+ld+ ++++
  KIR62734.1 547 IFAGPSGVGKTELSKALAEFLFGSEDAlIQLDMSEFHD 584
                 578***************98877655425666666555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.081        37      20      41 ..     204     225 ..     196     230 .. 0.79
   2 ?    7.6   0.0    0.0066         3      21      49 ..     542     570 ..     536     574 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.081
      AAA_29  20 dlkgatlltGpsGsGKSTllDA 41 
                 ++k++ +l+G+ G+GK++++  
  KIR62734.1 204 RTKNNPVLIGEPGVGKTAVVEG 225
                 4556789**********99865 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0066
      AAA_29  21 lkgatlltGpsGsGKSTllDAiqalLvpa 49 
                 ++g+++++GpsG+GK+ l  A++  L ++
  KIR62734.1 542 PSGSFIFAGPSGVGKTELSKALAEFLFGS 570
                 67899***********9998888877776 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.025        12       4      25 ..     211     232 ..     208     238 .. 0.84
   2 ?   -0.9   0.0       2.9   1.3e+03      80     104 ..     261     286 ..     253     289 .. 0.79
   3 ?    4.3   0.0     0.071        33       2      23 ..     546     567 ..     545     572 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.025
                 EE--TTSSHHHHHHHHHHHH.. CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellks 25 
                 + G+pGvGKt +v+ +++++ +
  KIR62734.1 211 LIGEPGVGKTAVVEGLSQKIIK 232
                 67************99998755 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHHHHHHH-.EEEE--- CS
    NTPase_1  80 sfeelalealrkalsead.viviDEi 104
                 +fee   ++l++  ++ d ++ iDEi
  KIR62734.1 261 DFEERLKKVLKEIRTRGDiILFIDEI 286
                 47888888888888888856689*99 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.071
                 EEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlell 23 
                 ++  Gp+GvGKt l k ++e l
  KIR62734.1 546 FIFAGPSGVGKTELSKALAEFL 567
                 5678**********99998876 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.019       8.8      54      92 ..     210     248 ..     177     253 .. 0.80
   2 ?    5.3   0.0     0.021       9.5      22      84 ..     511     578 ..     491     587 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.019
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  54 LlaGpsgtGktalaiaiskelgedvpfvalsgsevysle 92 
                 +l G++g Gkta+  ++s+++ +     +l+  ++y+l+
  KIR62734.1 210 VLIGEPGVGKTAVVEGLSQKIIKGEVPETLKDKQLYTLD 248
                 467****************99865444567777777665 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.021
                 XXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX CS
       TIP49  22 eeeglvGqkkareaagvivel....ikekklaGravLlaGpsgtGktalaiaiskel.gedvpfvals 84 
                  ++ ++Gq++a +a++  ++     +k+ k    + ++aGpsg Gkt l+ a+++ l g++   ++l 
  KIR62734.1 511 LHKRVIGQEDAVKAVSKAIRRtragLKDPKRPSGSFIFAGPSGVGKTELSKALAEFLfGSEDALIQLD 578
                 45679999999999887666511123444444557889***********9999987623555555555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.081        37      15      41 ..     205     231 ..     192     239 .. 0.77
   2 ?    7.1   0.0    0.0062       2.8      11      54 ..     537     582 ..     526     590 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.081
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdele 41 
                 ++   +l G pG GK+++ e l +++ 
  KIR62734.1 205 TKNNPVLIGEPGVGKTAVVEGLSQKII 231
                 44455677************9999875 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0062
  Zeta_toxin  11 psqerPk.lillgGqpGAGKselaellkdele.rqgnvvrldpDdl 54 
                 ++ +rP  + + +G +G GK+el+++l++ l  +++  ++ld  ++
  KIR62734.1 537 KDPKRPSgSFIFAGPSGVGKTELSKALAEFLFgSEDALIQLDMSEF 582
                 455777635677****************999878888888887666 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.028        13      37      65 ..     210     237 ..     188     306 .. 0.71
   2 ?    3.8   0.0     0.083        38      32      53 ..     542     563 ..     517     572 .. 0.74
   3 ?   -1.1   0.0       2.7   1.2e+03      70      87 ..     793     810 ..     785     823 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.028
      AAA_25  37 llaGapgtGKttlaldlalavatGkpwlg 65 
                 +l+G pg+GKt+++  l+ ++ +G+ +++
  KIR62734.1 210 VLIGEPGVGKTAVVEGLSQKIIKGE-VPE 237
                 699***********99999999888.555 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.083
      AAA_25  32 agelallaGapgtGKttlaldl 53 
                   +  ++aG++g+GKt l   l
  KIR62734.1 542 PSGSFIFAGPSGVGKTELSKAL 563
                 4566799*********987655 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.7
      AAA_25  70 eqgkVlyvsaEdsedelr 87 
                 ++g  ++v++E++ +++ 
  KIR62734.1 793 TPGQIVVVDCEGDPEDID 810
                 899**********98876 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       3.4   1.5e+03      47      79 ..      81     114 ..      72     123 .. 0.78
   2 ?   -2.2   0.0       9.4   4.3e+03      59      96 ..     212     249 ..     207     275 .. 0.67
   3 ?    9.5   0.0    0.0022         1      14      78 ..     502     568 ..     494     583 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 3.4
                 -SS-SS-EEEEEEE-TTSSHHHH.HHHHHHHHST CS
      Torsin  47 nekpkkpLvlsfhGwtGtGknfv.aeiiaenlyr 79 
                 ++++kk L ls+      G n++ +e i   l r
  KIR62734.1  81 TPRAKKVLELSLREALQLGHNYIgTEHILLGLIR 114
                 57899*****************944555555555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 9.4
                 EE-TTSSHHHHHHHHHHHHSTTGGGSTTEEEEEHHHHS CS
      Torsin  59 hGwtGtGknfvaeiiaenlyrdGlrsdyvkkfvatadf 96 
                  G +G Gk  v e + +++ +  +  +   k + t d+
  KIR62734.1 212 IGEPGVGKTAVVEGLSQKIIKGEVPETLKDKQLYTLDL 249
                 58999999999999999887766655555555555555 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0022
                 --HHHHHHHHHHH--S-HHHHHHHHHHHHHHHT-.SS-SS-E.EEEEEE-TTSSHHHHHHHHHHHHS CS
      Torsin  14 anleeLekdlekklfGqhlvkklvvksvkaylen.ekpkkpL.vlsfhGwtGtGknfvaeiiaenly 78 
                  +l  +e +l+k+++Gq  + k v k+++   +  ++pk+p   + f G +G Gk  +++ +ae l+
  KIR62734.1 502 SRLLRMEDELHKRVIGQEDAVKAVSKAIRRTRAGlKDPKRPSgSFIFAGPSGVGKTELSKALAEFLF 568
                 56778999********************87655414666664267899***************9888 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       1.8   8.5e+02      23      41 ..     210     228 ..     205     292 .. 0.80
   2 ?    0.5   0.1       1.6   7.4e+02     154     178 ..     437     462 ..     294     501 .. 0.74
   3 ?    7.9   0.3    0.0087         4      19     141 ..     543     694 ..     538     793 .. 0.49

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.8
      AAA_23  23 lItGpNGaGKTTildAikl 41 
                 +++G+ G GKT++++ +  
  KIR62734.1 210 VLIGEPGVGKTAVVEGLSQ 228
                 678999*******999875 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.6
      AAA_23 154 rleelekeleeledekkllekl.eqe 178
                   +++e++ +   +ek+ll ++ ++e
  KIR62734.1 437 DAQDFERAAQLRDKEKQLLGQKaQRE 462
                 22333333333334444443332222 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0087
      AAA_23  19 kgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiese.............gkvkayvelt......fenkdgry............ 86 
                 +g +++ Gp G GKT +  A+   L+g    l   +  + +++ ++++               g+  + v+++      f  + +              
  KIR62734.1 543 SGSFIFAGPSGVGKTELSKALAEFLFGSEDALIQLD-MSEFHDRYTVSRLvgappgyvgydegGQLTEKVRRRpfsvvlFDEIEKAHpdvfntllqile 640
                 5899***********************644433332.23333333333225555566666665444444555555555644444433555655433333 PP

      AAA_23  87 ........trsiererelskkkgkttkkaklellei.....deleqfisellgskkiilnlilflgqe 141
                                        + ++++++ ++ +     ++  + +s  ++ ++++ ++++ ++q+
  KIR62734.1 641 dgrltdgqG--------------RIVDFKNTVIILTtnlgtRDVAKAVSLGFQASEDSESNYDRMKQK 694
                 333333330..............333333222222222222333333333333333333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       946  (0.0527637); expected 358.6 (0.02)
Passed bias filter:                      732  (0.0408277); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              39  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.48
# Mc/sec: 5232.62
//
Query:       KIR62735.1  [L=170]
Description: amino acid-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-20   72.8   1.0      7e-11   42.0   0.2    2.1  2  ACT_6     ACT domain
    2.1e-14   52.9   3.2      2e-06   27.5   0.1    2.6  3  ACT       ACT domain
    7.1e-11   42.6   0.0    6.9e-05   23.4   0.0    2.2  2  ACT_4     ACT domain
    2.1e-06   27.4   0.2      0.013   15.3   0.0    2.6  2  ACT_7     ACT domain


Domain annotation for each model (and alignments):
>> ACT_6  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.2   1.6e-14     7e-11       3      63 ..       4      62 ..       2      75 .. 0.83
   2 !   29.9   0.0   9.4e-11   4.2e-07       4      74 ..      91     161 ..      88     163 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 1.6e-14
       ACT_6  3 llitvtGpdrpGltasLtsvlaefgvnilDieqavihgrlsLgllvsgpedalarlekaLl 63
                l itv+G drpG++a++++vla+ g+n++D+ + +++g+++ +l   gp+   a +e+aL 
  KIR62735.1  4 LAITVIGRDRPGIVADVAEVLARLGANLTDSTMTRLRGHFAMTLICVGPAA--ADVEAALA 62
                569****************************************99999943..33334443 PP

  == domain 2  score: 29.9 bits;  conditional E-value: 9.4e-11
       ACT_6   4 litvtGpdrpGltasLtsvlaefgvnilDieqavihgrlsLgllvsgpedalarlekaLlflakelgltve 74 
                 ++ v G+dr+G++a+ t+vl + g n++D+     ++  + ++ v++p  ++ ++   L ++a+elg+ v+
  KIR62735.1  91 VLAVHGADRMGIVAAMTRVLTDAGGNVTDLSTRLTGSLYVVVAEVDLPPGTFDEVAGRLARTAAELGVGVS 161
                 56799**************************************************************9775 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   4.4e-10     2e-06       3      47 ..       6      50 ..       5      68 .. 0.78
   2 !   25.4   0.3   1.9e-09   8.7e-06       1      51 [.      90     136 ..      90     140 .. 0.88
   3 ?   -0.8   0.0       0.3   1.4e+03       5      23 ..     135     151 ..     131     154 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 4.4e-10
                EEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEE CS
         ACT  3 lrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvv 47
                + v  +DrPG+ a+v+ +la++g N++  + ++ + ++a+  ++v
  KIR62735.1  6 ITVIGRDRPGIVADVAEVLARLGANLTDSTMTRLRGHFAMTLICV 50
                67899***********************99999999855555544 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 1.9e-09
                 EEEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEE CS
         ACT   1 tvlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvd 51 
                 +vl v+ +Dr G+ a+ +++l+d+g N++ +++r ++    ++++vv +vd
  KIR62735.1  90 YVLAVHGADRMGIVAAMTRVLTDAGGNVTDLSTRLTG----SLYVVVAEVD 136
                 67889*****************************995....5887777776 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.3
                 EEEESSTTHHHHHHHHHHH CS
         ACT   5 vgvpDrPGlLarvfgalad 23 
                 v++p  PG++ +v+g la+
  KIR62735.1 135 VDLP--PGTFDEVAGRLAR 151
                 5555..9999999999987 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.5e-08   6.9e-05       8      49 ..       5      44 ..       3      50 .. 0.85
   2 !   17.0   0.0   1.4e-06    0.0065       9      41 ..      92     124 ..      89     137 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.5e-08
       ACT_4  8 rleveaedrkglLaditqviseekanivsvnaktrkkdglae 49
                 ++v+++dr+g++ad+++v++  +an+++ +++  +  g + 
  KIR62735.1  5 AITVIGRDRPGIVADVAEVLARLGANLTDSTMTRLR--GHFA 44
                699***************************999854..4444 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.4e-06
       ACT_4   9 leveaedrkglLaditqviseekanivsvnakt 41 
                 l v + dr g++a +t+v++++++n+++++++ 
  KIR62735.1  92 LAVHGADRMGIVAAMTRVLTDAGGNVTDLSTRL 124
                 7899*************************9986 PP

>> ACT_7  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00018      0.81       8      35 ..       5      28 ..       4      38 .. 0.82
   2 !   15.3   0.0   2.8e-06     0.013       9      52 ..      92     133 ..      89     138 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00018
                EEEE-S-.---SS--HHHHHHHHHHTTT CS
       ACT_7  8 klsvvgsglpfdvtGivaklaspLaeag 35
                +++v+g     d +Giva +a++La+ g
  KIR62735.1  5 AITVIGR----DRPGIVADVAEVLARLG 28
                6778888....99***********9866 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.8e-06
                 EEE-S-.---SS--HHHHHHHHHHTTT---EEEE-SS-E..EEEEE CS
       ACT_7   9 lsvvgsglpfdvtGivaklaspLaeagIsifqiStyrtd..yiLVp 52 
                 l v+g+    d  Giva+++++L++ag +++ +St  t+  y++V 
  KIR62735.1  92 LAVHGA----DRMGIVAAMTRVLTDAGGNVTDLSTRLTGslYVVVA 133
                 566666....899*********************766551155555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1286.45
//
Query:       KIR62736.1  [L=186]
Description: formylmethionine deformylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-35  121.0   0.0      4e-35  120.8   0.0    1.0  1  Pep_deformylase  Polypeptide deformylase


Domain annotation for each model (and alignments):
>> Pep_deformylase  Polypeptide deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.0   2.2e-39     4e-35       2     154 ..      23     174 ..      22     178 .. 0.94

  Alignments for each domain:
  == domain 1  score: 120.8 bits;  conditional E-value: 2.2e-39
                      GG---TT-GGGCS--B---BSSHHHHHHHHHHHHHHHHHC.T-SEEEGGGGT--BSEEEEECCSS-ETT....SEEEEEEEEEEECSCEEECCE CS
  Pep_deformylase   2 kkivkvgdpvLrekakpvekfeskelekllekmletmkea.kgvgLAApQigvnkrlfvielpseeeeeeenkeltvliNPkitskseetitde 94 
                      +++v ++dpvL ++  +v+  + +e+ +l++++++tm+ +  +vgLAApQ+gv  ++f+++++ + +  +  +   vl+N ++  +  +  +  
       KIR62736.1  23 RPVVSAPDPVLSRPGPEVDPTS-DEVVRLAADLIATMRVSpGCVGLAAPQVGVGAQVFAVDVTGHPKALTV-HGTFVLCNARV-VEATRWKSGR 113
                      789****************655.55***************99***********************998654.4699*******.89999***** PP

                      E--TTSTT--CEEEEESCEEEEEE-.TTS-EEEEEEEHHHHHHHHHHHHHCTT--GGGGC- CS
  Pep_deformylase  95 EgClSvpgieakVeRskrikvkyld.ltgkeveleaegllArvlqHEiDhlnGklfidrid 154
                      EgC+Svp+++++V+R++r  v++l   tg +v+l  +g++Ar+lqHEiDh+ G lf+dr+ 
       KIR62736.1 114 EGCMSVPDLTGDVKRASRLVVEGLLpGTGAPVRLVTDGFEARALQHEIDHCLGLLFLDRVA 174
                      ************************99*********************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1338.00
//
Query:       KIR62737.1  [L=480]
Description: DNA repair protein RadA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-15   56.9   0.0    1.5e-10   40.9   0.0    2.2  2  ATPase        KaiC
    1.2e-13   51.1   6.8    2.9e-13   49.8   4.0    2.6  2  AAA_25        AAA domain
      1e-11   44.4   5.9    1.7e-11   43.6   5.9    1.4  1  Rubredoxin_2  Rubredoxin metal binding domain
    1.3e-08   34.5   0.0      6e-07   29.0   0.0    2.1  2  DnaB_C        DnaB-like helicase C terminal domain
    1.4e-05   24.9   0.3    0.00011   22.0   0.0    2.2  2  ChlI          Subunit ChlI of Mg-chelatase
    4.5e-05   23.9   0.0    7.3e-05   23.2   0.0    1.3  1  AAA           ATPase family associated with various cellular 
    0.00035   21.0   0.4    0.00035   21.0   0.4    2.3  2  AAA_16        AAA ATPase domain
    0.00039   20.4   0.1    0.00071   19.5   0.1    1.5  1  NACHT         NACHT domain
     0.0011   19.3   0.0     0.0022   18.3   0.0    1.4  1  AAA_22        AAA domain
     0.0021   17.4   0.0      0.016   14.4   0.0    2.0  2  Rad51         Rad51
     0.0042   16.8   4.2      0.023   14.4   4.2    2.1  1  AAA_30        AAA domain
  ------ inclusion threshold ------
      0.018   15.6   0.0      0.032   14.7   0.0    1.4  1  ABC_tran      ABC transporter
      0.036   13.8   0.0       0.11   12.3   0.0    1.7  1  AAA_29        P-loop containing region of AAA domain
      0.037   13.6   0.2      0.037   13.6   0.2    2.2  2  Lon_C         Lon protease (S16) C-terminal proteolytic domai
      0.038   14.0   0.0      0.067   13.2   0.0    1.4  1  AAA_5         AAA domain (dynein-related subfamily)
      0.051   13.5   0.0       0.14   12.1   0.0    1.7  1  NTPase_1      NTPase
      0.092   12.7   0.0       0.16   11.9   0.0    1.3  1  RsgA_GTPase   RsgA GTPase
       0.16   11.2   0.1        0.3   10.3   0.1    1.4  1  Zeta_toxin    Zeta toxin
       0.16   11.7   0.0       0.38   10.4   0.0    1.5  2  AAA_24        AAA domain
       0.24   10.5   0.1       0.44    9.6   0.1    1.3  1  PAXNEB        PAXNEB protein
        1.6    8.9   4.7        4.6    7.4   4.7    1.7  1  Zn-ribbon_8   Zinc ribbon domain
        5.9    6.4   7.3         43    3.7   7.3    2.2  1  zf-ribbon_3   zinc-ribbon domain


Domain annotation for each model (and alignments):
>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   1.8e-13   1.5e-10       2      72 ..      89     159 ..      88     169 .. 0.95
   2 !   14.1   0.0   2.8e-05     0.023     118     203 ..     182     270 ..     167     295 .. 0.75

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 1.8e-13
      ATPase   2 ktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenakslGw 72 
                 +tg+ +lD++l gG+  g+vvl++GepG GK+++ l  + + a++ g p + v+ ee+ +++r +a+++  
  KIR62737.1  89 PTGVSELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAQQWAATAGSPSLVVSGEESVSQVRLRAERMNA 159
                 8**************************************************************99999875 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.8e-05
      ATPase 118 ikakrvviDsitglayeekeav......aReilrqlvrvlkklgvTailvsekssseeaaggygveefivdgvivLdlkeiee.elvRtleiv 203
                 +k   +v+Ds++++++  +e v      +R+    lv v k++gv ++lv  ++++ +++ g++v e++vd v++ + ++ ++ ++vR    v
  KIR62737.1 182 VKPGLLVLDSVQTISTAGTEGVpggvtqVRAVTAALVAVAKERGVATVLVGHVTKD-GQVAGPRVLEHLVDVVLHFEGDKHSSlRMVR---GV 270
                 5667799*******766666432222339***********************7665.88889999888***99888866665544444...44 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   4.0   3.6e-16   2.9e-13      22     193 ..      95     238 ..      71     239 .. 0.79
   2 ?    0.2   0.0      0.57   4.6e+02      68     114 ..     306     355 ..     292     383 .. 0.62

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 3.6e-16
      AAA_25  22 rrwlvkgllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLfakd 120
                 ++ +++g l+ g+++llaG pg+GK+tl+ld+a  +a      g       + l+vs+E+s +++r R++++ + +   ++l +               
  KIR62737.1  95 LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAQQWAATA---G------SPSLVVSGEESVSQVRLRAERMNALH---DQLWLAA------------- 168
                 45556665667**************************422...3......478*********9***9999888665...5555553............. PP

      AAA_25 121 rggtlltadvdaleaaieevegvrlvviDplsralggdensnsd....vgalvealeriarrtgaavllvhHvgKes 193
                       ++d+ a+  ++++v+ ++l+v+D+++ +  ++ +        v+a+ +al  +a++ g+a++lv Hv K++
  KIR62737.1 169 ------ESDLGAVLGHLDAVK-PGLLVLDSVQTISTAGTEGVPGgvtqVRAVTAALVAVAKERGVATVLVGHVTKDG 238
                 ......367777899999986.***********7777444333323337**************************97 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.57
      AAA_25  68 apeqgkVlyvsaEdsedelrrRlravgeal...rddarllvldlagv.esl 114
                 +p +g+++ v+ E+++  l   ++a+  a    ++++++  ld+a+  + l
  KIR62737.1 306 EPVPGTCVTVAMEGRR-ALVTEVQALIGATvagSPRRTVSGLDGARLaMVL 355
                 468999999*****99.6666666665554477555666666665543333 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   5.9   2.1e-14   1.7e-11       1      28 []      25      52 ..      25      52 .. 0.98

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 2.1e-14
  Rubredoxin_2  1 YvCsqCGfesakwfGrCpsCgsWntlke 28
                  Y+C++CG++ +kw+GrCp+Cg+W++++e
    KIR62737.1 25 YECDACGHQPPKWVGRCPECGEWGSVVE 52
                  9************************998 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   7.4e-10     6e-07       3      66 ..      89     153 ..      88     166 .. 0.89
   2 ?    3.2   0.0     0.056        46     131     175 ..     185     231 ..     176     239 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 7.4e-10
                 XSSTHHHHHHCT.SBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSEEEEEESSSXHHHHHHH CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C   3 stgfkdLDklts.GlqkgdliiiAarpsmGktalalniaenaavkeklpvavfslemsaeqlvqR 66 
                 +tg ++LD++++ Gl +g ++++A+ p++Gk++l l++a++ a+++  p +v+s e s +q+  R
  KIR62737.1  89 PTGVSELDRVLGgGLVPGAVVLLAGEPGVGKSTLLLDVAQQWAATAGSPSLVVSGEESVSQVRLR 153
                 6899****988527***************************9999999********999998665 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.056
                 EEEEEEEGGGTBTS.CS.SSCCCHHHHHHHHHHHHHHHHCTSXEEEE CS
                 xxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 131 gliviDyLqlmegs.ee.kenreqevseisrsLkalakelnvpvial 175
                 gl+v+D +q ++++ +e     +++v +++ +L a+ake  v  + +
  KIR62737.1 185 GLLVLDSVQTISTAgTEgVPGGVTQVRAVTAALVAVAKERGVATVLV 231
                 799*********875544448899***************99987765 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.87   7.1e+02      85     118 ..     198     232 ..     171     247 .. 0.73
   2 !   22.0   0.0   1.4e-07   0.00011      61     118 ..     387     444 ..     378     446 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.87
        ChlI  85 lGeLsldGslrpvkgvlpial.aakkegikkvivp 118
                 +G  +  G + +v+ v+++++  ak++g+++v+v 
  KIR62737.1 198 AGTEGVPGGVTQVRAVTAALVaVAKERGVATVLVG 232
                 55556677888888887766624667777777764 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 1.4e-07
        ChlI  61 fDLpiAigilaaleqieaeeetlflGeLsldGslrpvkgvlpialaakkegikkvivp 118
                  DL++A+++ +   + + + +++++Ge++l+G++r+v  v   +++a++ g++ ++vp
  KIR62737.1 387 ADLAVALAVASGGLNLAINPHLVAIGEVGLTGEVRRVGAVPRRLAEAARLGFRVALVP 444
                 59*******9999999999*************************************99 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     9e-08   7.3e-05       1      75 [.     109     201 ..     109     253 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 9e-08
                 EEEESSTTSSHHHHHHHHHHHH....THEEEEEETTTCSSS..............STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.T CS
         AAA   1 vllyGppGtGKTllakavakel....gvefleisgsellsk..............yvgesekkirelfkeakekakpsilfiDEidalaksr.s 75 
                 vll G pG+GK++l   va+++    g++ l +sg e +s+              ++ ++e+++ +++ ++ + + p  l++D +  + ++  +
  KIR62737.1 109 VLLAGEPGVGKSTLLLDVAQQWaataGSPSLVVSGEESVSQvrlraermnalhdqLWLAAESDLGAVLGHLDAVK-PGLLVLDSVQTISTAGtE 201
                 79*******************544447999999999999778877777777777788888888888888887776.9********999988852 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.4   4.3e-07   0.00035      17     106 ..      96     177 ..      92     231 .. 0.59
   2 ?   -1.0   0.2       2.5     2e+03       4      30 ..     319     344 ..     318     365 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 4.3e-07
      AAA_16  17 ervrsgrp...elvllsGesGvGKsslvrellralekd...ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala 106
                 +rv  g+     +vll Ge+GvGKs+l+  +++++ ++     ++++g+   +          q+  r e +++l+d+    ++ a+   l ++l+
  KIR62737.1  96 DRVLGGGLvpgAVVLLAGEPGVGKSTLLLDVAQQWAATagsPSLVVSGEESVS----------QVRLRAERMNALHDQ----LWLAAESDLGAVLG 177
                 5555555555679***************9999998888653356677766666..........444455666666666....44444444444444 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.5
      AAA_16   4 GReeeleqLlsalervrsgrpelvlls 30 
                 GR++ + +++++++++ +g+p+ + +s
  KIR62737.1 319 GRRALVTEVQALIGATVAGSPRRT-VS 344
                 899999999999999999999554.45 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   8.7e-07   0.00071       2      28 ..     108     134 ..     107     236 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 8.7e-07
                 CEEEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegk 28 
                 +v+l Ge+G+GK+tLl  +a++wa+  
  KIR62737.1 108 VVLLAGEPGVGKSTLLLDVAQQWAATA 134
                 799********************9876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.7e-06    0.0022       7     129 ..     108     232 ..     105     234 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.7e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr. 104
                 ++++ Ge+G+GK+tll  +++q      a++++++ + v   +s s+  l+ e  +al+++l       e  l a+  +l+a +  +ll++D +q ++ 
  KIR62737.1 108 VVLLAGEPGVGKSTLLLDVAQQW-----AATAGSPSLVVSGEESVSQVRLRAERMNALHDQLWL---AAESDLGAVLGHLDAVKP-GLLVLDSVQTISt 197
                 67899***************996.....455688888888889999999999999999966555...9999999***********.**********965 PP

      AAA_22 105 .s...........eealeeLrsllnlsrkgvqliLvG 129
                               ++   L+  +  ++ gv+ +LvG
  KIR62737.1 198 aGtegvpggvtqvRAVTAALVAVA--KERGVATVLVG 232
                 415567556444444444444444..48888888888 PP

>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     2e-05     0.016      21      56 ..      90     125 ..      83     161 .. 0.90
   2 ?    0.3   0.0      0.41   3.3e+02     133     189 ..     184     237 ..     172     265 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2e-05
                 -S-HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHH CS
       Rad51  21 tGskklDelLgGGietgsiteifGefrsGktqlcht 56 
                 tG ++lD++LgGG+  g++  + Ge + Gk+ l   
  KIR62737.1  90 TGVSELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLD 125
                 9******************************98655 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.41
                 EEEEEEETTTGGGCH-------THHHHHHHHHHHHHHHHHHHHH--EEEEEEE---- CS
       Rad51 133 fallivDsvtalyRtdfsgrgelakRqqklgkllrtLrkladefevavvitnqvvaq 189
                  +ll++Dsv +      +g + +    +++  +  +L  +a+e +va v+  +v+++
  KIR62737.1 184 PGLLVLDSVQTIST---AGTEGVPGGVTQVRAVTAALVAVAKERGVATVLVGHVTKD 237
                 57788888876544...4556666667788888999999999999999999999887 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   4.2   2.8e-05     0.023      19     134 ..     107     232 ..     103     272 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.8e-05
      AAA_30  19 rvavltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkv.Laeelgieastiakllkrlk......grarlepgtllivDEagmvdtkqlaal. 108
                  v++l G +G GK+t+l  +++ w+a  g + ++++ ++ +++v L++e  ++a   + +l +        g+ +  +  ll+ D +  ++t+ ++ + 
  KIR62737.1 107 AVVLLAGEPGVGKSTLLLDVAQQWAATaGSPSLVVSGEESVSQVrLRAE-RMNALHDQLWLAAESdlgavlGHLDAVKPGLLVLDSVQTISTAGTEGVp 204
                 5899*********************998988888888888888857755.7888888888877668999985566666688888888777655555442 PP

      AAA_30 109 ..lkaaekagakvilvGDerQlasVeaG 134
                   ++++++  a ++ v  er  a V  G
  KIR62737.1 205 ggVTQVRAVTAALVAVAKERGVATVLVG 232
                 2233333334444444444444444444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0     4e-05     0.032       8      41 ..     103     136 ..      99     171 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4e-05
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkpteGe 41 
                 l +g +v + Ge G GKStLl  +a++   t+G+
  KIR62737.1 103 LVPGAVVLLAGEPGVGKSTLLLDVAQQWAATAGS 136
                 6789*****************9888888888775 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00013      0.11      24      39 ..     108     123 ..     103     132 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00013
      AAA_29  24 atlltGpsGsGKSTll 39 
                 ++ll+G+ G+GKSTll
  KIR62737.1 108 VVLLAGEPGVGKSTLL 123
                 79************97 PP

>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.8      0.51   4.1e+02     108     145 ..     201     240 ..     197     250 .. 0.84
   2 ?   13.6   0.2   4.5e-05     0.037     109     174 ..     384     449 ..     359     475 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.51
                 GGGGGHHHHHHHHHHHHTS--B-TTBE..E--EE-TT-BE CS
       Lon_C 108 dGPsaGvtlatalvslltgkkvrkdva..mtGeitLrGrv 145
                 +G   Gvt + a++++l  ++ ++ va  + G +t  G+v
  KIR62737.1 201 EGVPGGVTQVRAVTAALVAVAKERGVAtvLVGHVTKDGQV 240
                 5667899999999999999999999985568999999998 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 4.5e-05
                 GGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHHHHHHHTT-SBEEEEGGGGG CS
       Lon_C 109 GPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekllaakragikkvilPkenek 174
                  P+a +++a a+ s   + +++ ++   Ge+ L+G+v  +G +  +l  a r g +  ++P  +  
  KIR62737.1 384 EPAADLAVALAVASGGLNLAINPHLVAIGEVGLTGEVRRVGAVPRRLAEAARLGFRVALVPPGCGP 449
                 59999*******************999*****************************9999976655 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.2e-05     0.067       2      46 ..     109     157 ..     108     200 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.2e-05
                 EEEE--SSSSHHHHHHHGGGGB....S--EEEEE--TT--HHHHH--B- CS
       AAA_5   2 vlLvGppGtgKselaerlaaal....nreveyvqltrdtteedlkgrre 46 
                 vlL G+pG+gKs+l   +a+      +++ ++v + ++ ++  l+ +r 
  KIR62737.1 109 VLLAGEPGVGKSTLLLDVAQQWaataGSPSLVVSGEESVSQVRLRAERM 157
                 89***********988888766666799999999888888777776665 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00017      0.14       2      22 ..     109     129 ..     108     137 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00017
                 EEEE--TTSSHHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlel 22 
                 v++ G+pGvGK+Tl+  v+++
  KIR62737.1 109 VLLAGEPGVGKSTLLLDVAQQ 129
                 789************999986 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00019      0.16      99     122 ..     106     129 ..      84     153 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00019
                  TSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpe 122
                  + +++l+G+ GvGKStL+  ++++
   KIR62737.1 106 GAVVLLAGEPGVGKSTLLLDVAQQ 129
                  57899************9777665 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00037       0.3      18      41 ..     108     131 ..     105     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00037
  Zeta_toxin  18 lillgGqpGAGKselaellkdele 41 
                 ++ll+G pG GKs+l+ +++++ +
  KIR62737.1 108 VVLLAGEPGVGKSTLLLDVAQQWA 131
                 79**************99988765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00047      0.38       3      35 ..     107     147 ..     106     181 .. 0.81
   2 ?   -2.8   0.0       5.3   4.3e+03     149     173 ..     235     259 ..     209     275 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00047
      AAA_24   3 lkiliyGpsgiGKTtlakel........gpkplfidtekGl 35 
                 + +l+ G++g+GK+tl++          g   l++  e+++
  KIR62737.1 107 AVVLLAGEPGVGKSTLLLDVaqqwaataGSPSLVVSGEESV 147
                 5799************9988666666665555666666655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.3
      AAA_24 149 epklgkktanelkeevDlvlranlk 173
                 + + +    + l++ vD+vl  + +
  KIR62737.1 235 TKDGQVAGPRVLEHLVDVVLHFEGD 259
                 4444444467788999999876655 PP

>> PAXNEB  PAXNEB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00054      0.44      21      42 ..      90     111 ..      74     118 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00054
      PAXNEB  21 tGtpsLDklLgGGLplGsilli 42 
                 tG+++LD++LgGGL  G ++l+
  KIR62737.1  90 TGVSELDRVLGGGLVPGAVVLL 111
                 8**************9999986 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.7    0.0056       4.6       6      34 ..      25      46 ..      24      51 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0056
  Zn-ribbon_8  6 YrCeeCghefevlqsisdapltaCPeCgs 34
                 Y+C++Cgh+  +++         CPeCg+
   KIR62737.1 25 YECDACGHQPPKWVG-------RCPECGE 46
                 ***********9984.......4****96 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   7.3     0.053        43       3      23 ..      25      45 ..      23      46 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.053
  zf-ribbon_3  3 vrCPnCGa.plssddnvCpyCG 23
                 ++C +CG+ p  + +  Cp CG
   KIR62737.1 25 YECDACGHqP-PKWVGRCPECG 45
                 79******55.999999****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3263.40
//
Query:       KIR62738.1  [L=280]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-26   92.2  30.2    3.9e-26   91.9  30.2    1.1  1  UbiA      UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9  30.2   2.2e-30   3.9e-26       3     241 ..      20     250 ..      17     268 .. 0.79

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 2.2e-30
        UbiA   3 ipalvglalaaggspdlllllllllgtllaaaaanalNdyfDreiDadmertpnRPlvsGrispkealifaivllilgllllalllnpltallgllall 101
                 +++++g +la g    ++ +++++l++l+ ++a+   Nd +D++ Da + rt + P+++G++s++++ ++  + +++++ll+a+++n ++a+++ +al+
  KIR62738.1  20 VTVVAG-LLAVGVGHRASGVAAVALTVLASQLAVGWSNDHLDADRDAAVGRT-DKPVAAGAVSRRAVGLATRAAALATVLLAAATTNRTAAVWATVALV 116
                 455555.4444555566679999999***********************996.688*******9999999999999999999***************** PP

        UbiA 102 lyvvYtglrlKrrtllgtvvggiafglppllgwaavtgslsllalllalavflltwaialandlrdregDrkagiktlpvvlGrkaarillalllavll 200
                  +++Y+  +lK +++   +  +++fg +p + + a  g   ++a+l+a+a +ll ++ ++an l+d+ +D++ g++ lp +lG++ +r+ +a+ll+++ 
  KIR62738.1 117 SALAYN-WPLKSTPF-SVLPYAVSFGALPAFVVLALPGAPGPPAWLVAAA-ALLGAGAHFANVLPDLADDARTGVRGLPHRLGAAGSRVAAAALLLAAT 212
                 ******.69999999.***********************999*****999.99999999999**************************97444444444 PP

        UbiA 201 lallllllalllllylllalllaalallraarlvrrrdakk 241
                 +    l+++  +++ ++ ++++a++al+  +  ++ r+a++
  KIR62738.1 213 VT---LVAGPPGPPSWFGLSAVATAALVPPLTWYAGRNARR 250
                 44...445555555555555544444444333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2289.85
//
Query:       KIR62739.1  [L=261]
Description: 3-demethylubiquinone-9 3-methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-21   75.8   0.1    6.1e-21   74.9   0.1    1.5  1  Methyltransf_11  Methyltransferase domain
    6.8e-16   58.8   0.2    1.1e-15   58.1   0.2    1.3  1  Methyltransf_25  Methyltransferase domain
      1e-14   54.7   0.0    1.4e-14   54.3   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    3.2e-11   43.2   0.0    4.4e-11   42.8   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    7.2e-11   42.7   0.0    1.3e-10   41.9   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    2.6e-05   24.2   0.0    3.7e-05   23.7   0.0    1.2  1  Methyltransf_8   Hypothetical methyltransferase
    0.00017   21.0   0.0    0.00026   20.4   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0049   17.2   0.0     0.0078   16.5   0.0    1.3  1  AdoMet_MTase     Predicted AdoMet-dependent methyltransferase
     0.0081   15.8   0.0      0.013   15.1   0.0    1.4  1  MetW             Methionine biosynthesis protein MetW
  ------ inclusion threshold ------
      0.017   14.6   0.2      0.053   13.1   0.1    1.7  2  MTS              Methyltransferase small domain
       0.08   12.1   0.0       0.12   11.5   0.0    1.2  1  NNMT_PNMT_TEMT   NNMT/PNMT/TEMT family
       0.21   11.7   0.0         20    5.2   0.0    2.1  2  FtsJ             FtsJ-like methyltransferase
       0.23   11.1   0.0       0.41   10.3   0.0    1.4  1  TPMT             Thiopurine S-methyltransferase (TPMT)


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.1   4.4e-24   6.1e-21       1      96 []      62     151 ..      62     151 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 4.4e-24
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                      +d+GcG+G+la ++a +g+r vgvDl+  +l++a ++++++      v +da+ +p++d+  D+v + e l+hv+d+++a++e+ R+L+pgGll
       KIR62739.1  62 VDLGCGAGLLAPHVAGKGYRHVGVDLTRSALAQAAAHGVTP------VNGDATAVPLADGCADVVAAGELLEHVPDWRAAVAEACRLLRPGGLL 149
                      59*************999*************9999999888......99********************************************9 PP

                      EE CS
  Methyltransf_11  95 vi 96 
                      v+
       KIR62739.1 150 VL 151
                      85 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.2   8.1e-19   1.1e-15       2      97 .]      62     147 ..      61     147 .. 0.95

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 8.1e-19
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEEST.GGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssga.lhhlsdedlekalkeiarvLk 94 
                      +dlGcG G l+ ++a ++  ++ +gvD++ ++l++a+++       v+ v+gda+++p++dg  D+v + g+ l+h++  d+++a++e++r+L+
       KIR62739.1  62 VDLGCGAGLLAPHVAGKG--YRHVGVDLTRSALAQAAAHG------VTPVNGDATAVPLADGCADVVAA-GElLEHVP--DWRAAVAEACRLLR 144
                      69*************995..****************9999......9**********************.666***87..9************* PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       KIR62739.1 145 PGG 147
                      **9 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0     1e-17   1.4e-14       8     124 ..      42     158 ..      36     202 .. 0.78

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 1e-17
  Methyltransf_23   8 elsdklerllpk.lraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae........kakkaqkdqfdeqeaaepqgkfdlIvlrevl 92 
                      +l+++++ l+p   r+++ ++d+GcG G l+++ + +g+  +gvDl + a + a+        ++ +           +  +g  d++ + e+l
       KIR62739.1  42 WLARARAALVPPaTRPDALLVDLGCGAGLLAPHVAGKGYRHVGVDLTRSALAQAAahgvtpvnGDAT---------AVPLADGCADVVAAGELL 126
                      577888888876479999****************************988777663333333332333.........3333669*********** PP

  Methyltransf_23  93 ehvpdppellrqiatllkpgGylllseplasl 124
                      ehvpd+ ++++ + +ll+pgG+l+l + +  +
       KIR62739.1 127 EHVPDWRAAVAEACRLLRPGGLLVLDTLNDTA 158
                      ***************************98654 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   3.2e-14   4.4e-11       7     113 ..      61     155 ..      56     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 3.2e-14
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeierv 100
                      ++DlGCG+G l+   a   g++ ++vG+D +  a+ +A ++        v+   gd+++ +  l+d + D++ + e+l +++d  ++  e++r+
       KIR62739.1  61 LVDLGCGAGLLAPHVA---GKGYRHVGVDLTRSALAQAAAH-------GVTPVNGDATAVP--LADGCADVVAAGELLEHVPDWRAAVAEACRL 142
                      68**************...66788****************6.......667778*******..99***************************** PP

  Methyltransf_31 101 lkpggilliedpr 113
                      l+pgg l++++ +
       KIR62739.1 143 LRPGGLLVLDTLN 155
                      **********998 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   9.6e-14   1.3e-10       1      99 []      62     149 ..      62     149 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 9.6e-14
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      +++GcG G l+ +++ k  + + +gvD+ +sa+       a+  ++ ++ v+ +a+ +   dg    D+v a ++l+h++d+r++++++ +lL+
       KIR62739.1  62 VDLGCGAGLLAPHVAGK--GYRHVGVDLTRSAL-------AQAAAHGVTPVNGDATAVPLADG--CADVVAAGELLEHVPDWRAAVAEACRLLR 144
                      59***************..**************.......44445556667777777666665..89*************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG l
       KIR62739.1 145 PGGLL 149
                      ***86 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.7e-08   3.7e-05      74     158 ..      59     153 ..      42     171 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.7e-08
                     S-EEEES-TT-HHH.HH--S-..EEEEESS......-SSTTEEE..S-TTS-S--TT-EEEEEEE.S---SS-HHHHHHHHHHHEEEEEEEEEEE CS
  Methyltransf_8  74 lvvadlGcGeakia.eavrekekvrsfdlv......avnervva..cdlakvPledesvdvavfc.lslmgtnladflkeanrvlkvGGllkvae 158
                       ++dlGcG   +a +  ++  +   +dl+      a  + v++   d + vPl+d+ +dv+    l   + +++  + ea r+l++GGll +  
      KIR62739.1  59 ALLVDLGCGAGLLApHVAGKGYRHVGVDLTrsalaqAAAHGVTPvnGDATAVPLADGCADVVAAGeLLEHVPDWRAAVAEACRLLRPGGLLVLDT 153
                     4578********9953334445555677642222123444565422699***********988762445689******************98765 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.9e-07   0.00026      52     150 ..      62     150 ..      41     164 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.9e-07
                      EEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEE CS
  Ubie_methyltran  52 lDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkp 145
                      +D+ +G+g la ++   +g+ ++ v++D+  + L        + +   +  ++++a ++p  d+  Dvv+ +  l  v+D   a+ ea r l+p
       KIR62739.1  62 VDLGCGAGLLAPHV---AGKGYRHVGVDLTRSAL-------AQAAAHGVTPVNGDATAVPLADGCADVVAAGELLEHVPDWRAAVAEACRLLRP 145
                      56666666555433...34444556666655555.......444556788899***************************************** PP

                      EEEEE CS
  Ubie_methyltran 146 GGrlv 150
                      GG lv
       KIR62739.1 146 GGLLV 150
                      **875 PP

>> AdoMet_MTase  Predicted AdoMet-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.7e-06    0.0078      61      91 ..      60      90 ..      36      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.7e-06
  AdoMet_MTase 61 sfvdvgcgngllvyvlaaegykgygidlrkr 91
                   +vd+gcg gll   +a +gy+  g+dl + 
    KIR62739.1 60 LLVDLGCGAGLLAPHVAGKGYRHVGVDLTRS 90
                  579************************9765 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   9.3e-06     0.013      11      65 ..      55     108 ..      45     142 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.3e-06
        MetW  11 ikpgsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqgdld 65 
                  +p + ++dlGcG G l   ++  k+ +  G++l ++++a++ a+G++ ++gd+ 
  KIR62739.1  55 TRPDALLVDLGCGAGLLAPHVAG-KGYRHVGVDLTRSALAQAAAHGVTPVNGDAT 108
                 56777899*******99999865.***************************9985 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.9e-05     0.053      34      71 ..      60      95 ..      45     121 .. 0.78
   2 ?   -1.4   0.0       1.1   1.5e+03     121     137 ..     135     151 ..     129     162 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.9e-05
                EEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHH CS
         MTS 34 kvlDlGcGaGvlgaalakespeaevtlvdvdarAlesa 71
                 ++DlGcGaG+l+ ++a +  +   + vd    Al+ a
  KIR62739.1 60 LLVDLGCGAGLLAPHVAGKGYR--HVGVDLTRSALAQA 95
                579************9987766..46677777776655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
                 HHHHHHHHEEEEEEEEE CS
         MTS 121 liaeAkeaLkegGeLli 137
                  +aeA + L++gG L++
  KIR62739.1 135 AVAEACRLLRPGGLLVL 151
                 689999*******8875 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.8e-05      0.12     155     201 ..     110     154 ..      87     161 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.8e-05
                     SS..EEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEEC CS
  NNMT_PNMT_TEMT 155 lpkkadvvvtifcleaacedleeylralrnlasllkpGGhlvlggvl 201
                     +p  ad    + +     e++  +++a+ ++++ll+pGG lvl ++l
      KIR62739.1 110 VPL-ADGCADVVAAGELLEHVPDWRAAVAEACRLLRPGGLLVL-DTL 154
                     554.6666666666666778899****************9997.445 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.023        32      22      72 ..      58     109 ..      35     120 .. 0.77
   2 ?    5.2   0.0     0.015        20     115     145 ..     133     163 ..     110     171 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.023
                 T-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS....HHHTTEEEECS-CCC CS
        FtsJ  22 gktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm....aplpgvttiqgditd 72 
                 +   vDlg++ G  +  ++ + g   + v+vDl       a   gvt ++gd t 
  KIR62739.1  58 DALLVDLGCGAGLLAPHVAGK-G--YRHVGVDLTRSalaqAAAHGVTPVNGDATA 109
                 445899999999988888877.4..799*****88856544449****9**9986 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.015
                 HHHHCCHCCCCECCCEEEECCCHCCCHHHHH CS
        FtsJ 115 laalelalkllkpggtfvlkifrgeeteall 145
                 +aa+  a++ll+pgg +vl ++++++ ++l+
  KIR62739.1 133 RAAVAEACRLLRPGGLLVLDTLNDTALSRLV 163
                 7888889***************999988776 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0003      0.41      45      81 ..      65     100 ..      47     113 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0003
                 T-TT-HHHHHH-BTTEEEEEE-S-HHHHHHHHHHHTT CS
        TPMT  45 lCGkaldlvwlAeqgrevvGvelselAvekffeeanl 81 
                 +CG +l +   A +g++ vGv+l  +A+++++  ++ 
  KIR62739.1  65 GCGAGLLAPHVAGKGYRHVGVDLTRSALAQAA-AHGV 100
                 7*****************************74.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1804.11
//
Query:       KIR62740.1  [L=135]
Description: hypothetical protein TK50_17360 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0084   16.1   0.0        1.5    8.9   0.0    2.3  2  Cuticle_1  Crustacean cuticle protein repeat


Domain annotation for each model (and alignments):
>> Cuticle_1  Crustacean cuticle protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   8.5e-05       1.5      21      34 ..       9      22 ..       5      22 .. 0.90
   2 !    4.9   0.0    0.0015        27      17      35 ..      89     108 ..      82     110 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 8.5e-05
   Cuticle_1 21 nivliGpSGaVlsd 34
                 +vl+Gp+G Vl+d
  KIR62740.1  9 AVVLDGPTGQVLAD 22
                59**********98 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0015
   Cuticle_1  17 hgva.nivliGpSGaVlsdG 35 
                 + ++  ++ +G S+ Vl dG
  KIR62740.1  89 QREShRVACDGSSATVLLDG 108
                 5566689***********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       109  (0.00607954); expected 358.6 (0.02)
Passed bias filter:                       95  (0.00529868); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1021.93
//
Query:       KIR62741.1  [L=243]
Description: hypothetical protein TK50_17365 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1679.13
//
Query:       KIR62742.1  [L=161]
Description: CarD family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-17   61.6   0.0    1.5e-16   60.9   0.0    1.3  1  CarD_CdnL_TRCF  CarD-like/TRCF domain


Domain annotation for each model (and alignments):
>> CarD_CdnL_TRCF  CarD-like/TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   8.1e-21   1.5e-16       1      96 []       3     111 ..       3     111 .. 0.96

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 8.1e-21
  CarD_CdnL_TRCF   1 lkvGDyVvhedhGiGriegiekrevegaekeylvleyadkkgdklyvPvdqldl..irkyiskeepkldklg..............gkrwektke 79 
                     ++vG+ Vv+++hG++ ie+ie+r ++g+ k+ylvl++a+ +  ++ vP+++++   +r+++++e   l k++              ++r++++ e
      KIR62742.1   3 FSVGETVVYPHHGAALIEAIETRVIKGEPKQYLVLRVAQGD-LTVRVPAENAEIvgVREVVGEE--GLGKVFdvlraphteeptnwSRRYKANLE 94 
                     789************************************87.9******************999..9999999999******************* PP

  CarD_CdnL_TRCF  80 kakkgvkeeaaelvkly 96 
                     k+ +g+  ++ae+v+++
      KIR62742.1  95 KLASGNPLKVAEVVRDL 111
                     **************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1354.10
//
Query:       KIR62743.1  [L=231]
Description: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-64  216.7   5.1    3.7e-64  216.5   5.1    1.0  1  IspD          2-C-methyl-D-erythritol 4-phosphate cytidylyltr
    1.1e-11   45.3  14.1    2.1e-11   44.4  13.6    1.6  2  NTP_transf_3  MobA-like NTP transferase domain
     0.0019   18.1   0.0     0.0024   17.8   0.0    1.2  1  CTP_transf_3  Cytidylyltransferase


Domain annotation for each model (and alignments):
>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.5   5.1   6.1e-68   3.7e-64       1     219 [.      11     227 ..      11     229 .. 0.98

  Alignments for each domain:
  == domain 1  score: 216.5 bits;  conditional E-value: 6.1e-68
                 EEEEEECTTSSCTT-SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGGHHHHHHHHGG.CCEEEEE--SSHHHHHHHHHHTTSSTTSEEEE- CS
        IspD   1 vvvvipAAGsGkRmkaglpKqflelkgqtllehtvdallaskavdkivvvvseddteefeqllld.ksiqlvaGGdeRaesVlnglkalegeakfVLvH 98 
                 v+v++pAAG G R++ g pK+++ l+g++ll h+v+ ++a  +v++ivv+ ++ +++++++ll++  ++++v GG eR+ sV ++l a++   +++LvH
  KIR62743.1  11 VAVLVPAAGAGVRLGPGAPKALRPLAGEPLLVHAVRRIAAAASVHTIVVAAPAAEVDAVRDLLTPvAPVTVVPGGAERQASVAAALAAVPAGPEIILVH 109
                 689**************************************************************989******************************* PP

                 -TT-TT--HHHHHHHHHHHHTTCSEEEEEEE-SSEEEEEETTTBEEEEETGTTEEEEEEEEEEEHHHHHHHHHHHHHCT---SSHHHHHHHTT--EEEE CS
        IspD  99 DaARpllkaadiaellaaaeqstqgailalpvkDtikrveadglvaetedRegLwaaqtPqgFrvdlllaahakgeqegaeitDdaslvekiGlsvkvV 197
                 DaAR+l++++ ++++ aa + ++ ++i++lpv Dtik v   ++v++t+dR+ L+a+qtPqgFr+++l+aah+++   g   tDda lvek G+ v  V
  KIR62743.1 110 DAARALTPPELVESVAAAVRSGHDAVIPVLPVVDTIKEVGPGEVVLGTVDRSALRAVQTPQGFRRAVLTAAHEAA---GDPLTDDAGLVEKQGVPVVCV 205
                 ****************************************888******************************99...667****************** PP

                 E--TTG----SHHHHHHHHHHH CS
        IspD 198 eGeednlKittpeDlalAeail 219
                 +G+e +lK+t+p DlalAe +l
  KIR62743.1 206 PGSEHALKVTRPFDLALAEHLL 227
                 *******************987 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4  13.6   3.6e-15   2.1e-11       2     129 ..      14     152 ..      13     188 .. 0.70
   2 ?    0.5   0.1      0.12   7.1e+02      31      81 ..     142     181 ..     138     211 .. 0.51

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 3.6e-15
                   EEEEESS-TTTT.T.THHHHCCCCCCHHHHHHHHHCTT..-CEEEEECSHCHHHHHHTTC.....TS-EEE-TTSS-SHHHHHHHHHHHH..SSSCE CS
  NTP_transf_3   2 viLAGGrSsRmg.g.dKallplggkpllervldalraa.gvdevvvvggdeevlaalarl.....gvrvvededpgkgplaslaaalraaa.dadav 89 
                   ++ A+G++ R+g g +Kal pl+g+pll +++++++aa +v+ +vv++++ ev  a+++l     +v+vv+    g+   as+aaal+a++ + + +
    KIR62743.1  14 LVPAAGAGVRLGpGaPKALRPLAGEPLLVHAVRRIAAAaSVHTIVVAAPAAEVD-AVRDLltpvaPVTVVPG---GAERQASVAAALAAVPaGPEII 106
                   566********9548********************9995599999999998876.46666342223444444...6778899999999954488888 PP

                   EEEETT-TT--HHHHHHHHHCHHHHTSSEEEEESSSEE.......EE CS
  NTP_transf_3  90 lvlacDmPlltpelverllaaaaasgadvvvptyeger.......gh 129
                   lv  +  +l +pelve ++aa + sg+d+v+p+            g+
    KIR62743.1 107 LVHDAARALTPPELVESVAAAVR-SGHDAVIPVLPVVDtikevgpGE 152
                   888899999***********986.88899998877444444444433 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.12
                   HHHHCTT.-CEEEEECSHCHHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHH CS
  NTP_transf_3  31 ldalraagvdevvvvggdeevlaalarlgvrvvededpgkgplaslaaalr 81 
                   +d+++++g +evv+ + d++ l        r v+ +   +g   ++++a++
    KIR62743.1 142 VDTIKEVGPGEVVLGTVDRSAL--------RAVQTP---QGFRRAVLTAAH 181
                   5555555555555554443332........223332...233333333333 PP

>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.1e-07    0.0024      16     114 ..      30     127 ..      12     155 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.1e-07
                   GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES-HHHHHHHHHTT..SEEEE--TTCSSHHHHHHHHHHHHTTT.TTSEEEEE-TT-TT--HHHHHH CS
  CTP_transf_3  16 KnlldlggkpliayvleaalkskafekvivaTDseeiknvakefg..asvlvtrsslesdterflevvkaflmseneeiivnlqGdnPllqeevikk 110
                   K+l++l+g+pl+ + ++++  ++ ++ ++va    e++ v   +   a v v ++ +e+ +++++++++a+ +    eii+   ++ +l+++e+++ 
    KIR62743.1  30 KALRPLAGEPLLVHAVRRIAAAASVHTIVVAAPAAEVDAVRDLLTpvAPVTVVPGGAER-QASVAAALAAVPAG--PEIILVHDAARALTPPELVES 123
                   9******************************9998887766666566666666666655.45556666666655..557777777777777777766 PP

                   HHHH CS
  CTP_transf_3 111 aiet 114
                   ++ +
    KIR62743.1 124 VAAA 127
                   6665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1624.43
//
Query:       KIR62744.1  [L=160]
Description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-45  154.2   0.0    3.5e-45  154.1   0.0    1.0  1  YgbB      YgbB family


Domain annotation for each model (and alignments):
>> YgbB  YgbB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.1   0.0   1.9e-49   3.5e-45       2     154 ..       5     154 ..       4     155 .. 0.99

  Alignments for each domain:
  == domain 1  score: 154.1 bits;  conditional E-value: 1.9e-49
                 EEEEEEEEEEEEEECEEEETTEEEEESEEEESSSTCHHHHHHHHHHHHHHTT--SHHHHSTTTCGGCTTTCHHHHHHHHHHHHHHTTEEEEEEEEEEEC CS
        YgbB   2 riGlGyDvHrlaegrklvlgGveieaekgllahSDgDvllhAlvDAllGalalgdigelfpdtdpkykgadSaelLeevlellkekgykivnvdvtiia 100
                 r+ +G+DvH++++gr+++l+G+ ++ + gl++hSD+Dv++hA ++All+a++lgd+g  f   +p+++ga +  lL+e++++++++g++i+nv+v+++ 
  KIR62744.1   5 RVAIGTDVHAFEAGRPCWLAGLLWPDQDGLAGHSDADVVAHAACNALLSAAGLGDLGANFGVAEPEWAGAPGVALLTETARRVRAAGFEIGNVSVQVVG 103
                 7899*********************************************************************************************** PP

                 SSSTCGGGHHHHHHHHHHHHTS-GGGEEEEEEETTTSHHHHTTSEEEEEEEEEE CS
        YgbB 101 ekpklapykeamrenlakllgleeeqvsvkattteklgfvGrgegiaalavvll 154
                 ++pk+ p++++ ++ l++++g   + v+v+a tt++lgf+Grgeg+a +av+l+
  KIR62744.1 104 NRPKIGPRRAEAEAVLSEAVG---APVTVSAATTDGLGFTGRGEGLAGIAVALV 154
                 ********************9...99*************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1188.34
//
Query:       KIR62745.1  [L=341]
Description: hypothetical protein TK50_17385 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-14   51.7  26.8      3e-05   23.8   0.6    4.8  4  TPR_2       Tetratricopeptide repeat
    5.2e-12   45.0  10.9    0.00041   20.0   0.2    4.5  4  TPR_1       Tetratricopeptide repeat
    1.9e-11   43.2   4.3      0.026   14.7   0.1    4.3  4  TPR_8       Tetratricopeptide repeat
    1.1e-10   42.0  62.3    8.2e-06   26.4  19.3    4.9  6  TPR_16      Tetratricopeptide repeat
      1e-08   35.3  49.0    0.00053   20.6   6.0    6.0  6  TPR_14      Tetratricopeptide repeat
    1.9e-06   27.9   9.7     0.0038   17.5   0.2    5.1  5  TPR_17      Tetratricopeptide repeat
    4.2e-06   27.2   8.7    4.2e-06   27.2   8.7    4.1  6  TPR_19      Tetratricopeptide repeat
    9.9e-06   25.8  25.0       0.01   16.1   9.4    4.3  4  TPR_12      Tetratricopeptide repeat
    2.5e-05   23.8  10.2      0.057   13.1   0.4    3.9  4  TPR_11      TPR repeat
    9.2e-05   22.5  40.8     0.0055   16.8  12.0    4.3  4  TPR_9       Tetratricopeptide repeat
    0.00048   20.0  18.5        3.3    7.9   0.2    4.6  4  TPR_7       Tetratricopeptide repeat
     0.0024   18.1   5.9     0.0058   16.8   0.3    3.0  3  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
      0.008   16.7   8.2      0.008   16.7   8.2    7.6  7  TPR_4       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   15.3   3.1      0.013   15.3   3.1    5.0  5  TPR_10      Tetratricopeptide repeat
      0.055   13.6   6.6        2.6    8.2   0.0    3.6  4  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
       0.16   11.6   6.3       0.25   11.0   5.5    1.8  1  HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
          2    9.3  19.6       0.84   10.4   0.3    4.6  4  TPR_6       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.5   5.9e-06    0.0062       1      34 []       7      40 ..       7      40 .. 0.95
   2 !   23.8   0.6   2.8e-08     3e-05       1      33 [.      41      73 ..      41      74 .. 0.96
   3 !    9.2   0.2    0.0013       1.4       4      26 ..      78     100 ..      75     108 .. 0.81
   4 !   19.8   1.1   5.5e-07   0.00058       3      33 ..     145     175 ..     143     176 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.9e-06
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleldPnn 34
                ae++ +++++++ lg+y+eA+     Al+l+P n
  KIR62745.1  7 AEGYLQRAQLLADLGRYDEAAGEVGLALALEPAN 40
                799****************************976 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 2.8e-08
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleldPn 33
                a+al  l+++++++g+++eA++a e+Al+l+P+
  KIR62745.1 41 ADALTTLARVHLAAGRPAEARAAAEAALALAPD 73
                78999***************************7 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0013
       TPR_2   4 lynlGlayyklgdyeeAleafek 26 
                 l ++Gla+ ++g+y+eA+    +
  KIR62745.1  78 LVARGLALVEQGEYAEAAGTAGR 100
                 6789*************865555 PP

  == domain 4  score: 19.8 bits;  conditional E-value: 5.5e-07
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 a+  l+l++++l  y+ A++a+++Al+ldP+
  KIR62745.1 145 AHLVLALVAARLRLYDLAERAYREALRLDPE 175
                 8889**************************7 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.6   0.00032      0.33       1      20 [.       7      26 ..       7      28 .. 0.95
   2 !   13.5   0.1   4.5e-05     0.048       1      33 [.      41      73 ..      41      74 .. 0.97
   3 ?    5.0   0.0     0.022        23       7      20 ..      81      94 ..      77      95 .. 0.91
   4 !   20.0   0.2   3.9e-07   0.00041       2      33 ..     144     175 ..     143     176 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00032
                HHHHHHHHHHHHHTT-HHHH CS
       TPR_1  1 akalynlGnayfklgkydeA 20
                a+ + ++++++  lg+ydeA
  KIR62745.1  7 AEGYLQRAQLLADLGRYDEA 26
                789****************9 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 4.5e-05
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALelnPn 33
                a+al  l+ +++  g++ eA ++ e AL l P+
  KIR62745.1 41 ADALTTLARVHLAAGRPAEARAAAEAALALAPD 73
                89******************************7 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.022
                HHHHHHHTT-HHHH CS
       TPR_1  7 lGnayfklgkydeA 20
                +G+a+ ++g+y eA
  KIR62745.1 81 RGLALVEQGEYAEA 94
                9************9 PP

  == domain 4  score: 20.0 bits;  conditional E-value: 3.9e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 +a+  l+++  +l  yd A+ +y++AL+l+P+
  KIR62745.1 144 QAHLVLALVAARLRLYDLAERAYREALRLDPE 175
                 68899**************************7 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.2   0.00026      0.27       1      20 [.       7      26 ..       7      40 .. 0.85
   2 !   14.5   0.0   2.9e-05     0.031       1      33 [.      41      73 ..      41      74 .. 0.95
   3 ?    0.8   0.0      0.72   7.5e+02       6      20 ..      80      94 ..      77      95 .. 0.88
   4 !   14.7   0.1   2.5e-05     0.026       2      33 ..     144     175 ..     143     176 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00026
                CCHHHHHHHHHHHTT-HHHH CS
       TPR_8  1 aeayynlgsiylklgdyeeA 20
                ae y++ ++++ +lg+y+eA
  KIR62745.1  7 AEGYLQRAQLLADLGRYDEA 26
                689****************9 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.9e-05
                CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  1 aeayynlgsiylklgdyeeAkeyyekaleldpd 33
                a+a+  l++++l  g+  eA ++ e al l+pd
  KIR62745.1 41 ADALTTLARVHLAAGRPAEARAAAEAALALAPD 73
                68999***************************8 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.72
                HHHHHHHHTT-HHHH CS
       TPR_8  6 nlgsiylklgdyeeA 20
                  g+++ ++g+y eA
  KIR62745.1 80 ARGLALVEQGEYAEA 94
                6899*********99 PP

  == domain 4  score: 14.7 bits;  conditional E-value: 2.5e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +a++ l+++   l  y+ A+ +y++al+ldp+
  KIR62745.1 144 QAHLVLALVAARLRLYDLAERAYREALRLDPE 175
                 688899*************************6 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6  17.6   2.9e-08     3e-05       1      66 [.      11      73 ..      11      75 .. 0.97
   2 !   26.4  19.3   7.8e-09   8.2e-06       2      66 ..      46     108 ..      45     110 .. 0.93
   3 !    8.1  10.2    0.0041       4.3       2      54 ..      80     129 ..      79     133 .. 0.84
   4 !   18.2   9.4   2.8e-06     0.003      16      65 ..     128     174 ..     114     177 .. 0.85
   5 ?   -0.1   1.7       1.4   1.5e+03      37      67 ..     187     216 ..     175     217 .. 0.64
   6 ?   -2.1   0.3       6.2   6.6e+03      14      31 ..     292     306 ..     288     315 .. 0.56

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.9e-08
      TPR_16  1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66
                l++a++++++g+yd+Aa     al++    P++a+Al  l++++l++gr aeA+a+ +aal+ apd
  KIR62745.1 11 LQRAQLLADLGRYDEAAGEVGLALALE---PANADALTTLARVHLAAGRPAEARAAAEAALALAPD 73
                578************************...**********************************98 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 7.8e-09
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraalraapd 66 
                  lar +l+ag++++A+aa+eaal+++   Pd+++ l ++g+a+ +qg++aeAa  + r +++aa d
  KIR62745.1  46 TLARVHLAAGRPAEARAAAEAALALA---PDTVAPLVARGLALVEQGEYAEAAgTAGRLLAAAADD 108
                 58************************...************************9999999777665 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0041
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa 54 
                 a+++a++++g+y++Aa  + ++l+++    d+a A+   + ++    + ++A+
  KIR62745.1  80 ARGLALVEQGEYAEAAGTAGRLLAAA---ADDAYAQRSAAAILSGSRNGQPAL 129
                 7899**********************...999999999998887665555554 PP

  == domain 4  score: 18.2 bits;  conditional E-value: 2.8e-06
      TPR_16  16 AaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 A++a+ + ++++   P+  +A+l l+++a+r+  +++A+ +yr+alr +p
  KIR62745.1 128 ALNAAWRGVELA---PEESQAHLVLALVAARLRLYDLAERAYREALRLDP 174
                 666666667777...********************************999 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 1.4
      TPR_16  37 llllgdaalrqgrlaeAaalyraalraapda 67 
                 +l++ + a+++ +lae + +++aa + apd 
  KIR62745.1 187 RLERRWYAAALAELAESVPAVQAA-PVAPDR 216
                 555556677777777777777776.777776 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 6.2
      TPR_16  14 ddAaaaleaalkrdpssP 31 
                 d+ +a++  a++++   P
  KIR62745.1 292 DRSLALAVYAVAAG---P 306
                 44444444455555...4 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   3.8   2.1e-06    0.0022       2      43 ..       8      49 ..       7      50 .. 0.95
   2 !   20.6   6.0     5e-07   0.00053       2      35 ..      42      75 ..      41      79 .. 0.91
   3 !    8.3   5.8    0.0046       4.8       4      42 ..      78     116 ..      75     118 .. 0.89
   4 ?    6.6   0.7     0.016        16       5      42 ..     113     150 ..     111     151 .. 0.88
   5 !   13.4   4.5    0.0001      0.11       2      36 ..     144     178 ..     143     180 .. 0.91
   6 ?   -0.3   0.2       2.6   2.8e+03      10      27 ..     193     210 ..     186     220 .. 0.57

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.1e-06
      TPR_14  2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43
                e +l++a++l+ lG++deA+     alal P++a+a++ la+
  KIR62745.1  8 EGYLQRAQLLADLGRYDEAAGEVGLALALEPANADALTTLAR 49
                779***********************************9998 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 5e-07
      TPR_14  2 eallalaeallalGdpdeAiallrralalaPdda 35
                +al  la+++la+G+p+eA+a++++alalaPd  
  KIR62745.1 42 DALTTLARVHLAAGRPAEARAAAEAALALAPDTV 75
                68889**************************965 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0046
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 l a++ al ++G+++eA+  + r+la+a dda a++  a
  KIR62745.1  78 LVARGLALVEQGEYAEAAGTAGRLLAAAADDAYAQRSAA 116
                 67899**************************99987655 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.016
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 + +a++l  +++ + A++++ r ++laP++ +a+l la
  KIR62745.1 113 RSAAAILSGSRNGQPALNAAWRGVELAPEESQAHLVLA 150
                 556788888889999********************998 PP

  == domain 5  score: 13.4 bits;  conditional E-value: 0.0001
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddae 36 
                 +a+l la + ++l+ +d A++++r+al+l+P+ ++
  KIR62745.1 144 QAHLVLALVAARLRLYDLAERAYREALRLDPELDR 178
                 58999**************************8765 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 2.6
      TPR_14  10 allalGdpdeAiallrra 27 
                 + +al +++e++ + ++a
  KIR62745.1 193 YAAALAELAESVPAVQAA 210
                 334455555555555555 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.1    0.0034       3.6      13      32 ..       7      26 ..       2      27 .. 0.89
   2 !   17.5   0.2   3.6e-06    0.0038       5      33 ..      33      61 ..      32      62 .. 0.96
   3 ?    3.4   0.1      0.12   1.2e+02       2      32 ..      64      94 ..      63      95 .. 0.92
   4 ?   -0.7   0.0       2.4   2.5e+03       5      31 ..     135     161 ..     132     164 .. 0.77
   5 ?    0.0   0.0       1.4   1.4e+03       1      11 [.     165     175 ..     165     177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0034
      TPR_17 13 adaynnLAelllknGdlmtA 32
                a+ y ++A+ll+ +G++++A
  KIR62745.1  7 AEGYLQRAQLLADLGRYDEA 26
                7789**************98 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 3.6e-06
      TPR_17  5 aleldPnnadaynnLAelllknGdlmtAr 33
                al+l+P nada++ LA+++l +G++++Ar
  KIR62745.1 33 ALALEPANADALTTLARVHLAAGRPAEAR 61
                7999************************9 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.12
      TPR_17  2 ylkaleldPnnadaynnLAelllknGdlmtA 32
                 + al+l P+ + ++  ++ +l ++G++++A
  KIR62745.1 64 AEAALALAPDTVAPLVARGLALVEQGEYAEA 94
                58899999999*****************998 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 2.4
      TPR_17   5 aleldPnnadaynnLAelllknGdlmt 31 
                  +el P  + a+  LA + +++  ++ 
  KIR62745.1 135 GVELAPEESQAHLVLALVAARLRLYDL 161
                 6789999999**999998877665555 PP

  == domain 5  score: 0.0 bits;  conditional E-value: 1.4
      TPR_17   1 lylkaleldPn 11 
                 +y++al+ldP 
  KIR62745.1 165 AYREALRLDPE 175
                 59********6 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2     0.016        17      25      45 ..       7      27 ..       3      32 .. 0.85
   2 !   27.2   8.7     4e-09   4.2e-06       3      65 ..      19      79 ..      17      84 .. 0.91
   3 !    7.5   9.6    0.0057         6      14      66 ..      64     116 ..      62     119 .. 0.90
   4 !    7.1   5.9    0.0073       7.7       1      66 [.      85     150 ..      85     152 .. 0.78
   5 ?    1.0   2.3       0.6   6.3e+02      19      57 ..     137     175 ..     123     180 .. 0.80
   6 ?   -2.8   0.1       8.9   9.4e+03       7      16 ..     193     202 ..     188     211 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.016
      TPR_19 25 aearllLAeallalgqldeAe 45
                ae  l+ A++l  lg++deA 
  KIR62745.1  7 AEGYLQRAQLLADLGRYDEAA 27
                5667888*************6 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 4e-09
      TPR_19  3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLl 65
                + g+y+eA+     al+ +p na+a+  LA+++la+g+++eA+a+ +a+++ +pd   +a L 
  KIR62745.1 19 DLGRYDEAAGEVGLALALEPANADALTTLARVHLAAGRPAEARAAAEAALALAPD--TVAPLV 79
                679****************************************************..555554 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0057
      TPR_19  14 leqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlA 66 
                  e+al+ +p+  + + +   al+++g+++eA  +  +l+++++dda++++  A
  KIR62745.1  64 AEAALALAPDTVAPLVARGLALVEQGEYAEAAGTAGRLLAAAADDAYAQRSAA 116
                 5889999***99999999***************************99997555 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0073
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlA 66 
                 l+++g yaeA+    ++l++++++a+a+   A +l  + + + A ++  +  e +p +++++ +lA
  KIR62745.1  85 LVEQGEYAEAAGTAGRLLAAAADDAYAQRSAAAILSGSRNGQPALNAAWRGVELAPEESQAHLVLA 150
                 678889999999888888888888888888888888888888888877777777777777777776 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.6
      TPR_19  19 qedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 + +p+ + a l LA +   l  +d Ae++  ++++ dp 
  KIR62745.1 137 ELAPEESQAHLVLALVAARLRLYDLAERAYREALRLDPE 175
                 668999999999999999999999999999888888876 PP

  == domain 6  score: -2.8 bits;  conditional E-value: 8.9
      TPR_19   7 yaeAlalleq 16 
                 ya+Ala l++
  KIR62745.1 193 YAAALAELAE 202
                 5555555544 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   9.4   9.8e-06      0.01       3      76 ..       7      72 ..       5      73 .. 0.91
   2 !   15.6   8.4   1.4e-05     0.015       3      73 ..      41     103 ..      39     107 .. 0.87
   3 ?    3.9   0.5     0.064        67       7      32 ..      79     104 ..      73     119 .. 0.58
   4 !   11.5   1.4   0.00026      0.28      39      76 ..     137     174 ..     126     175 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9.8e-06
      TPR_12  3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76
                a  + ++a++l+ lgrydeA      al++      p +   a +l +L+r+++a+gr++eA+++ e ala+a+
  KIR62745.1  7 AEGYLQRAQLLADLGRYDEAAGEVGLALALE-----PAN---ADALTTLARVHLAAGRPAEARAAAEAALALAP 72
                5667789********************9999.....755...99***************************986 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.4e-05
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 a al+ la v++++gr +eA++  e+al++a     pd   t++ l + g ++ ++g+y+eA     + la
  KIR62745.1  41 ADALTTLARVHLAAGRPAEARAAAEAALALA-----PD---TVAPLVARGLALVEQGEYAEAAGTAGRLLA 103
                 567888*************************.....98...8999*****************876666665 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.064
      TPR_12   7 nnlaavlrrlgrydeAlellekalei 32 
                 + ++++l ++g+y+eA     + l++
  KIR62745.1  79 VARGLALVEQGEYAEAAGTAGRLLAA 104
                 34445555555555555444444444 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00026
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +  p+++++   L+ +  +l  y+ A+++++eal++++
  KIR62745.1 137 ELAPEESQAHLVLALVAARLRLYDLAERAYREALRLDP 174
                 55678889999999999999999999999999999875 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.4   5.4e-05     0.057       3      41 ..      16      54 ..      14      55 .. 0.90
   2 !    8.5   0.2    0.0015       1.6       6      42 .]      53      89 ..      48      89 .. 0.86
   3 ?    5.2   0.1     0.016        17       1      13 [.      82      94 ..      82      95 .. 0.93
   4 !    7.9   0.2    0.0024       2.5      11      27 ..     160     176 ..     159     179 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.4e-05
      TPR_11  3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41
                ++ ++G+y+eA  +   Al+l P na+a+  L+ ++++ 
  KIR62745.1 16 LLADLGRYDEAAGEVGLALALEPANADALTTLARVHLAA 54
                6789**************************999998765 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0015
      TPR_11  6 eqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42
                + G+  eA +a ++Al+l Pd +  + ++Gla+ +qG
  KIR62745.1 53 AAGRPAEARAAAEAALALAPDTVAPLVARGLALVEQG 89
                55666788888899*********************99 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.016
      TPR_11  1 GdayyeqGkyeeA 13
                G a++eqG+y eA
  KIR62745.1 82 GLALVEQGEYAEA 94
                889*********9 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0024
      TPR_11  11 eeAieaYkkAlkldPdn 27 
                 + A  aY++Al+ldP+ 
  KIR62745.1 160 DLAERAYREALRLDPEL 176
                 566679*********86 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   3.2   4.9e-05     0.052      29      72 ..       7      50 ..       4      51 .. 0.92
   2 !   16.8  12.0   5.3e-06    0.0055       2      63 ..      48     109 ..      47     117 .. 0.86
   3 ?    5.3   2.6      0.02        22      20      72 ..     100     152 ..      96     153 .. 0.94
   4 ?   -0.3   9.1       1.2   1.2e+03       3      65 ..     151     216 ..     149     218 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.9e-05
       TPR_9 29 peerrdRGlllaqlGclsaAladLeaylalapdapdaeairaqL 72
                +e ++ R++lla lG++ +A+ +   +lal+p+++da +  a++
  KIR62745.1  7 AEGYLQRAQLLADLGRYDEAAGEVGLALALEPANADALTTLARV 50
                677899*******************************9988876 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 5.3e-06
       TPR_9   2 kaiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdap 63 
                  ++++ + + ++a a++e  l+laPd++  +  RGl+l+++G +++A+    + la a d++
  KIR62745.1  48 ARVHLAAGRPAEARAAAEAALALAPDTVAPLVARGLALVEQGEYAEAAGTAGRLLAAAADDA 109
                 568999*****************************************987777666666555 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.02
       TPR_9  20 rllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeairaqL 72 
                 rll+ a dd++  r  + +l  + + + Al++  + ++lap+  +a+++ a++
  KIR62745.1 100 RLLAAAADDAYAQRSAAAILSGSRNGQPALNAAWRGVELAPEESQAHLVLALV 152
                 8999*******************************************999876 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.2
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeayl...alapdapda 65 
                  +a+r + ++ a +++   l l+P+  +   + G+++ ++  ++aAla+L   +   + ap apd+
  KIR62745.1 151 LVAARLRLYDLAERAYREALRLDPELDRAGDEPGIVRLERRWYAAALAELAESVpavQAAPVAPDR 216
                 578999999*****************************************9988777888888877 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.5     0.005       5.3       2      27 ..      10      35 ..      10      42 .. 0.76
   2 !    7.9   0.2    0.0032       3.3       1      31 [.      43      73 ..      43      74 .. 0.91
   3 !    7.5   0.5    0.0043       4.5       2      31 ..      78     107 ..      77     112 .. 0.80
   4 !    7.7   1.1    0.0037       3.9       2      33 ..     146     175 ..     145     181 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.005
       TPR_7  2 LlnLarlysrlGdyeeAielyeqsLa 27
                +l+ a+l  +lG+y+eA++    +La
  KIR62745.1 10 YLQRAQLLADLGRYDEAAGEVGLALA 35
                567799***********986666444 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0032
       TPR_7  1 aLlnLarlysrlGdyeeAielyeqsLaltkd 31
                aL  Lar++ + G+ +eA    e++Lal+ d
  KIR62745.1 43 ALTTLARVHLAAGRPAEARAAAEAALALAPD 73
                6889********************9998866 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0043
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 L++ + + +++G+y+eA++   ++La + d
  KIR62745.1  78 LVARGLALVEQGEYAEAAGTAGRLLAAAAD 107
                 56778999***********99999954433 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0037
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdpe 33 
                 +l La +  rl+ y+ A++ y++  al+ dpe
  KIR62745.1 146 HLVLALVAARLRLYDLAERAYRE--ALRLDPE 175
                 566899999**************..6666664 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0       0.1   1.1e+02      63      76 ..      14      27 ..       7      31 .. 0.86
   2 !   16.8   0.3   5.5e-06    0.0058       3      79 ..      21      98 ..      19     101 .. 0.91
   3 ?    6.3   1.0     0.011        11       1      81 [.      87     168 ..      87     174 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.1
                HHHHHHTT-HHHHH CS
      ANAPC3 63 AqcllkLkkyeeAi 76
                Aq l +L++y+eA 
  KIR62745.1 14 AQLLADLGRYDEAA 27
                89999*******97 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 5.5e-06
                T-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  3 nnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaL 79
                ++y++A     ++la e+ +++++  lA +++ +g+  +A   ++ a  l++ + + ++  + +l+++++y eA  + 
  KIR62745.1 21 GRYDEAAGEVGLALALEPANADALTTLARVHLAAGRPAEARAAAEAAlALAPDTVAPLVARGLALVEQGEYAEAAGTA 98
                678999999999999********************************999999999988899************8765 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.011
                 HTT-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   1 dqnnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 +q+ y +A   a rllaa ++++++    A  l  + + + A++ + +  +l+++  ++++++A ++  L  y+ A++a+ +
  KIR62745.1  87 EQGEYAEAAGTAGRLLAAAADDAYAQRSAAAILSGSRNGQPALNAAWRGvELAPEESQAHLVLALVAARLRLYDLAERAYRE 168
                 588999**********6666555555555777777777888888888888999*****************999999998865 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   1.9   0.00035      0.37       3      21 ..       9      27 ..       7      30 .. 0.89
   2 !   16.7   8.2   7.6e-06     0.008       3      26 .]      43      66 ..      41      66 .. 0.92
   3 !    9.6   2.1    0.0015       1.6       3      24 ..      77      98 ..      75     100 .. 0.86
   4 ?    0.4   3.8       1.4   1.5e+03       2      25 ..     144     167 ..     143     168 .. 0.80
   5 ?   -2.0   1.0       8.1   8.6e+03       4      10 ..     194     200 ..     191     202 .. 0.49
   6 ?   -0.7   0.5         3   3.2e+03       4      14 ..     266     276 ..     263     276 .. 0.80
   7 ?   -2.0   0.2       8.2   8.6e+03       6      18 ..     322     334 ..     321     334 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00035
       TPR_4  3 allaLArallalGdldeAr 21
                 +l +A++l++lG++deA+
  KIR62745.1  9 GYLQRAQLLADLGRYDEAA 27
                5789**************7 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 7.6e-06
       TPR_4  3 allaLArallalGdldeAraller 26
                al  LAr++la+G+++eAra++e+
  KIR62745.1 43 ALTTLARVHLAAGRPAEARAAAEA 66
                7889*****************995 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0015
       TPR_4  3 allaLArallalGdldeArall 24
                 l+a++ al ++G+++eA+ ++
  KIR62745.1 77 PLVARGLALVEQGEYAEAAGTA 98
                6899**************8666 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 1.4
       TPR_4   2 rallaLArallalGdldeAralle 25 
                 +a+l+LA ++++l  +d A+++ +
  KIR62745.1 144 QAHLVLALVAARLRLYDLAERAYR 167
                 69*********9977777777666 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 8.1
       TPR_4   4 llaLAra 10 
                 ++aLA++
  KIR62745.1 194 AAALAEL 200
                 4444443 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 3
       TPR_4   4 llaLArallal 14 
                  ++L+++l+a+
  KIR62745.1 266 GAVLGWLLAAR 276
                 5799****997 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 8.2
       TPR_4   6 aLArallalGdld 18 
                 +LA a +a G+l+
  KIR62745.1 322 VLAIAVAAVGELA 334
                 7999999999886 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.4     0.033        35       9      22 ..      14      27 ..       6      36 .. 0.82
   2 ?   15.3   3.1   1.3e-05     0.013       2      31 ..      41      70 ..      41      71 .. 0.95
   3 ?    1.6   0.3      0.26   2.7e+02       9      21 ..      82      94 ..      80      96 .. 0.89
   4 ?   -1.7   0.2       2.8   2.9e+03       4      27 ..     111     134 ..     109     138 .. 0.76
   5 ?    1.4   2.6       0.3   3.2e+02       8      30 ..     149     171 ..     148     172 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.033
      TPR_10  9 analrqrgrydeAe 22
                a +l ++grydeA 
  KIR62745.1 14 AQLLADLGRYDEAA 27
                8899*********6 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.3e-05
      TPR_10  2 AsslnNLanalrqrgrydeAealleealai 31
                A +l+ La+++ + gr +eA+a +e ala+
  KIR62745.1 41 ADALTTLARVHLAAGRPAEARAAAEAALAL 70
                789*************************96 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.26
      TPR_10  9 analrqrgrydeA 21
                + al ++g+y+eA
  KIR62745.1 82 GLALVEQGEYAEA 94
                78999*******9 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 2.8
      TPR_10   4 slnNLanalrqrgrydeAeallee 27 
                 ++   a++l+  ++++ A++ + +
  KIR62745.1 111 AQRSAAAILSGSRNGQPALNAAWR 134
                 566668999999999999998766 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.3
      TPR_10   8 LanalrqrgrydeAealleeala 30 
                 La +  +++ yd Ae+ ++eal+
  KIR62745.1 149 LALVAARLRLYDLAERAYREALR 171
                 7888899999***********97 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0024       2.6      14      38 ..      20      44 ..      17      51 .. 0.92
   2 ?   -2.9   0.1         7   7.4e+03      19      33 ..      59      73 ..      58      74 .. 0.86
   3 ?    1.0   0.1      0.44   4.7e+02       9      31 ..      83     105 ..      81     113 .. 0.79
   4 ?    5.9   0.2     0.012        13       7      34 ..     149     176 ..     146     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0024
                HT-HHHHHHHHHHHHHHTTS-HHHH CS
  Fis1_TPR_C 14 lgeYseArryvdalLeiEPenrQaq 38
                lg+Y+eA   v   L++EP n  a+
  KIR62745.1 20 LGRYDEAAGEVGLALALEPANADAL 44
                89*******************9987 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7
                HHHHHHHHHHHHTTS CS
  Fis1_TPR_C 19 eArryvdalLeiEPe 33
                eAr  ++a L++ P+
  KIR62745.1 59 EARAAAEAALALAPD 73
                799999999999987 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.44
                 HHHHHHT-HHHHHHHHHHHHHHT CS
  Fis1_TPR_C   9 lGhyklgeYseArryvdalLeiE 31 
                 l+   +geY eA   + +lL+  
  KIR62745.1  83 LALVEQGEYAEAAGTAGRLLAAA 105
                 566778*******9999999765 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.012
                 HHHHHHHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C   7 lAlGhyklgeYseArryvdalLeiEPen 34 
                 lAl  ++l+ Y+ A r  +  L+++Pe 
  KIR62745.1 149 LALVAARLRLYDLAERAYREALRLDPEL 176
                 788899********************96 PP

>> HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.5   0.00024      0.25      11      95 ..      41     125 ..      33     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00024
  HrpB1_HrpK  11 vggLievlslalasedtedaellLdalrvLrPevaeldllegvlliergrweeAlrlLreveaeasgtpyakaLlAlcLaalrDe 95 
                  ++L  ++ + la++++++a +  +a  +L P +++  +  g+ l+e+g+++eA+ +   + a+a   +ya+   A  L+  r+ 
  KIR62745.1  41 ADALTTLARVHLAAGRPAEARAAAEAALALAPDTVAPLVARGLALVEQGEYAEAAGTAGRLLAAAADDAYAQRSAAAILSGSRNG 125
                 578999999999*******************************************988888888888888888888877766654 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.8       0.3   3.2e+02       2      20 ..       9      27 ..       8      28 .. 0.88
   2 ?   10.4   0.3   0.00079      0.84       2      33 .]      43      74 ..      42      74 .. 0.91
   3 ?    5.3   0.4     0.033        35       6      28 ..      81     103 ..      78     108 .. 0.87
   4 ?    2.5   0.9      0.27   2.8e+02       2      31 ..     145     174 ..     144     175 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.3
                HHHHHHHHHHHHHHHHHHH CS
       TPR_6  2 AlyklalsyrklgdtdkAl 20
                 ++++a+++  lg++d+A 
  KIR62745.1  9 GYLQRAQLLADLGRYDEAA 27
                68999******99****95 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00079
                HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6  2 AlyklalsyrklgdtdkAlealerlikeYPdS 33
                Al  la+ ++++g++++A++a e  +   Pd+
  KIR62745.1 43 ALTTLARVHLAAGRPAEARAAAEAALALAPDT 74
                66679******99**************99996 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.033
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerlik 28 
                 ++l++ ++g++++A  +  rl+ 
  KIR62745.1  81 RGLALVEQGEYAEAAGTAGRLLA 103
                 699***************99986 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYP 31 
                 A + lal   +l  +d A +a+++ ++  P
  KIR62745.1 145 AHLVLALVAARLRLYDLAERAYREALRLDP 174
                 67778999999889**********999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 2091.36
//
Query:       KIR62746.1  [L=304]
Description: hypothetical protein TK50_17390 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 1917.23
//
Query:       KIR62747.1  [L=292]
Description: hypothetical protein TK50_17400 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-19   69.0   0.0    5.6e-19   68.6   0.0    1.1  1  NmrA            NmrA-like family
    2.4e-17   63.4   4.4    3.8e-17   62.8   4.4    1.3  1  NAD_binding_10  NAD(P)H-binding
    5.5e-05   22.7   0.1    9.7e-05   21.9   0.1    1.4  1  adh_short       short chain dehydrogenase
  ------ inclusion threshold ------
      0.015   14.8   0.1      0.027   13.9   0.1    1.5  1  Epimerase       NAD dependent epimerase/dehydratase family
      0.044   12.9   0.1      0.064   12.3   0.1    1.2  1  RmlD_sub_bind   RmlD substrate binding domain
       0.13   12.1   1.8       0.26   11.2   1.8    1.7  1  KR              KR domain


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   1.9e-22   5.6e-19       2     230 ..       4     228 ..       3     231 .. 0.86

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 1.9e-22
                 EESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHTT-SEEEE-.--GG..S-HHHHHHHHHHHHHHHS-S CS
        NmrA   2 lviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelv..kgdlddkeslvealkgvdvvfsv.tgfy..skeiedgkklvdAakeaGvk 95 
                  v+Ga+G +G+  vr+l+ agh+v al+Rd+   la +  +a+  +     d d+ + l +al g d   +v t ++     i++  + +dAa++aGv 
  KIR62747.1   4 GVTGASGGLGGRTVRMLAGAGHRVVALTRDPGAALAGAGRAAPERVEarRVDFDEPAGLPAALAGIDRLLIVsTDAWepARRIAQHRAAIDAAVAAGVG 102
                 59*****************************99999999999977764478999************97665515566999******************* PP

                 EEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHHH CS
        NmrA  96 hfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvikil 194
                 h++y sl++++       p   + ++    ee +r  g+p t+++  ++++ ++ lla+    + ++++  vt  g+g +  v  d+ + ++a+v+ + 
  KIR62747.1 103 HVVYTSLVACD------GPPELLNAAHRATEEQLRGCGLPWTILRNAIYASGVAELLAP----AVSTGR-HVTNAGDGAVAYVARDDCAAVAAAVLTAG 190
                 ***********......2344455566678*****************************....666666.8999*****87777788888888888888 PP

                 HHHHHH.TTEEEEE-S.EEE-HHHHHHHHHHHHTS-EE CS
        NmrA 195 kdprkl.kgkriklag.ntlsgneivelfekkigktvk 230
                  +p+    g++++++g + l+   ++ l+  ++g++v+
  KIR62747.1 191 PEPAGGlAGRALDVTGpEALTAAHLAGLLGGRLGRPVE 228
                 88777669999999875889999999999999999985 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   4.4   1.3e-20   3.8e-17       1     182 [.       7     188 ..       7     190 .. 0.77

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 1.3e-20
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH...CTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC.HHHH..HHHHHHHHHHCT CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele...aeeglevvegdvtdvedlaealkgadaVvsalggggk.deeg..aknivdaakeag 89 
                     GA+G+ G + v+ l+ + gh+v+al+R+p  + + +   a e++e+  +d+ +++ l +al+g+d  ++     ++  +++  +++++daa +ag
      KIR62747.1   7 GASGGLGGRTVRMLAGA-GHRVVALTRDPGAALAGAgraAPERVEARRVDFDEPAGLPAALAGIDRLLIVSTDAWEpARRIaqHRAAIDAAVAAG 100
                     9****************.5*********98774322233679***********************765555444442444456************ PP

                     --EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-C.......EE-ST.--SEEEEETTSS----EEEHHHHHHH CS
  NAD_binding_10  90 vkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpgg.......Ltdep.ttkyrvvekgepfkggsisradVAdv 176
                     v ++v+ s + ++    g+ +           aa+ra ee lr  gl wTi+r +        L   + +t+ +v++ g+    + ++r+d A+v
      KIR62747.1 101 VGHVVYTSLVACD----GPPEL--------LNAAHRATEEQLRGCGLPWTILRNAIyasgvaeLLAPAvSTGRHVTNAGD-GAVAYVARDDCAAV 182
                     **********999....33322........2368********************99333333333333344444444444.44569********* PP

                     HHHHCT CS
  NAD_binding_10 177 lvavld 182
                     ++avl+
      KIR62747.1 183 AAAVLT 188
                     ****97 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   3.2e-08   9.7e-05       2      71 ..       2      69 ..       1      74 [. 0.82

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.2e-08
                EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHH CS
   adh_short  2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealveka 71
                +v vtGas+G+G  +++ la +G +vv++ r + ++  +a   +++ +++ a +vD  + + + a+++ +
  KIR62747.1  2 IVGVTGASGGLGGRTVRMLAGAGHRVVALTRDPGAA--LAGAGRAAPERVEARRVDFDEPAGLPAALAGI 69
                577*************************88886655..66666666788999999999888888887766 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1     9e-06     0.027       3      38 ..       5      40 ..       3     109 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9e-06
                EETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCH CS
   Epimerase  3 VtGatGfiGsalvkallekgyevigldrlssasnta 38
                VtGa+G +G  +v+ l+ +g++v++l+r++ a   +
  KIR62747.1  5 VTGASGGLGGRTVRMLAGAGHRVVALTRDPGAALAG 40
                9***************************96655444 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.1e-05     0.064       3      84 ..       3     103 ..       1     109 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.1e-05
                    EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHT CS
  RmlD_sub_bind   3 ilvtGanGqlGseLakqlaeeglevlaltre...................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavna 79 
                    + vtGa+G lG   ++ la +g+ v+altr+                   ++d+++++ + ++l+ ++  ++v++ A+    +  ++++a  a+ a
     KIR62747.1   3 VGVTGASGGLGGRTVRMLAGAGHRVVALTRDpgaalagagraapervearRVDFDEPAGLPAALAGIDRLLIVSTDAWEPARRIAQHRAAIDAAVA 98 
                    569*************************************************************************99988777777776666666 PP

                    HHHHH CS
  RmlD_sub_bind  80 eavea 84 
                     +v++
     KIR62747.1  99 AGVGH 103
                    66665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.8   8.9e-05      0.26       5      35 ..       5      34 ..       2     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.9e-05
                EETTTSHHHHHHHHHHHHHHS-EEEEE-SS. CS
          KR  5 itGGlGgLGlelarwlaekgarhlvllsRsa 35
                +tG+ GgLG  ++r+la  g r ++ l+R++
  KIR62747.1  5 VTGASGGLGGRTVRMLAGAGHRVVA-LTRDP 34
                8******************988665.55663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1865.44
//
Query:       KIR62748.1  [L=393]
Description: homogentisate 1,2-dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-14   51.6   0.0    1.2e-13   50.6   0.0    1.6  1  HgmA      homogentisate 1,2-dioxygenase
    1.6e-06   27.7   0.0    7.2e-06   25.6   0.0    2.0  2  Cupin_2   Cupin domain
  ------ inclusion threshold ------
       0.12   12.4   0.0       0.23   11.5   0.0    1.3  1  DUF2603   Protein of unknown function (DUF2603)


Domain annotation for each model (and alignments):
>> HgmA  homogentisate 1,2-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0     2e-17   1.2e-13     134     419 ..     108     384 ..       8     387 .. 0.84

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 2e-17
                 S---SEEEEESSEEEEEEEEES-EEEEETTEEEEE-TTEEEEE-TT--EE.EE-S.SSEEEEEEEEES-....-EE----GGGTTS-BS-GGGEEEE-- CS
        HgmA 134 ksmedkafynadGellivpqkGelelvtelGrlkvepgeiaviprGvrfk.veledeearGyilevyga....kfklPdlGPiGanglanprdfkaPva 227
                 ++     f +a G+  +  ++G+l++   +G+l++ +g+ ++ip    ++ v   de+ar   +e  g+    k  l  +G     +    rd + P a
  KIR62748.1 108 ADRPSPLFRDATGDHCLYLESGSLRVESPFGALDAVAGDYVIIPTSTIHRlVPTGDEPARLLAVEAAGHlgppKRYLSVRGQFLEHSPYCERDVRGPDA 206
                 455567899***********************************98777637788999**9999998753333455777788888888899******** PP

                 -----EEEEEEEEEEETTEEEEEEEEE-S--EEEEEES---EEEEGGG-B----SSSS---GGGGEEEEEE-SSTT-EEEEEEEE-SEEE.--TTS--S CS
        HgmA 228 ayedkeskeltviskfqgklfaakldhspldvvaWhGnyvPykydlkkfnvinsvsfdhpdPsiftvltapsekeGvaivdfvifpPrWl.vaektfrP 325
                     + s +++v++++   +    + h p+dvv+W G  +P+ + ++ f +i      h  P ++  + +p       i+    f Pr +    ++   
  KIR62748.1 207 PLLIDGS-DVEVLVRHRRGWTRYVYAHHPFDVVGWDGHLYPWAFSIHDFEPITGR--IHQPPPVHQTFQGPN----FVICS---FVPRKVdYHPDAIPV 295
                 9877666.99*****************************************9865..478888887666653....33444...557765156788889 PP

                 ---B--SSEEEEEE.EE--------.---TT-EEEE-TT--B---HHHHHHHHHS----EEEST-EEEEEEESS--EE-HHHHH------------ CS
        HgmA 326 PyyhrnvmsefmGl.ieGaydakee.GfvpgGaslhslmtahGPdaesfekaskaelkPekiddtlafmfesslvlavtelaaelealdedylecW 419
                 Py h nv s+ m +   G+y+a+++ G   g +slh    +hGP   + e+++ ++       d la m ++   l ++ +a e+   d  y  +W
  KIR62748.1 296 PYNHHNVDSDEMLFyTGGNYEARRGsGIGQGSISLHPSGFTHGPQPGAAERSIGVDFF-----DELAVMVDTFRPLDLCAAADEC--EDPAYAWTW 384
                 *******997776515579***9864799999*************9999998887763.....5599999999999999888555..456666666 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.2e-09   7.2e-06      15      70 ..     116     171 ..     107     172 .. 0.87
   2 ?   -1.6   0.1      0.38   2.2e+03       6      29 ..     289     314 ..     285     337 .. 0.61

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.2e-09
                 CSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEE CS
     Cupin_2  15 rHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllvv 70 
                 r    d+++y  +G ++++      +  aGd+v++p+ t Hr++ tgdeparll v
  KIR62748.1 116 RDATGDHCLYLESGSLRVESPFGALDAVAGDYVIIPTSTIHRLVPTGDEPARLLAV 171
                 5556679999999*99999555579****************************987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.38
                 ETTEEEEEECSSSEE..EEEEEEESE CS
     Cupin_2   6 ppGesapshrHpged..effyVleGe 29 
                 +p +   + +H++ d  e+++   G 
  KIR62748.1 289 HPDAIPVPYNHHNVDsdEMLFYTGGN 314
                 55553333333332223777666665 PP

>> DUF2603  Protein of unknown function (DUF2603)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.8e-05      0.23      25      65 ..     120     160 ..     112     167 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.8e-05
     DUF2603  25 neklLelkkGsleskepwfvideedkkyvllpeellsklve 65 
                  + +L l++Gsl  + p+   d+    yv++p++++++lv 
  KIR62748.1 120 GDHCLYLESGSLRVESPFGALDAVAGDYVIIPTSTIHRLVP 160
                 6899*********************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2742.66
//
Query:       KIR62749.1  [L=316]
Description: hypothetical protein TK50_17410 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2474.43
//
Query:       KIR62750.1  [L=398]
Description: fumarylacetoacetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-53  180.3   0.0    5.5e-53  179.8   0.0    1.1  1  FAA_hydrolase    Fumarylacetoacetate (FAA) hydrolase family
    1.6e-21   76.5   0.0    2.3e-21   76.0   0.0    1.2  1  FAA_hydrolase_N  Fumarylacetoacetase N-terminal


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.8   0.0   6.2e-57   5.5e-53       3     217 ..     114     394 ..     113     395 .. 0.90

  Alignments for each domain:
  == domain 1  score: 179.8 bits;  conditional E-value: 6.2e-57
                    EEEEEE--SHHHHHTTT.......-SS-EEEEEEGGGE.EETTE..EE-TTSSSS-EE..................EEEEEEEESS..-B--T--H CS
  FAA_hydrolase   3 vcdglnyaehvreagka......aeeppdrhiplepvfflkrasslvgpgdpirrPag............sekldyEvELavvigk..plrevlsv 78 
                    + d++++++h+ ++g+       +  p+++h p+   ++++ra ++v +g+pi+rP g            s +ld+E+E+++v+g   +l+e++ v
     KIR62750.1 114 YVDFYSSEHHAGNVGQIfrpgqpPLLPNWKHLPI---GYHGRAGTVVVSGTPIVRPTGqratpdgpvcgpSVRLDIEAEVGFVVGVpsALGEPVGV 206
                    6799***********99***9999999**99999...******************************999999*************888999999* PP

                    HHHHTTEEEEEEEEEEE-SBGGG---.HHHHHHTGGGEEEEEE-B--B-.STT---S......................S-EEEEEETTEEEEEEE CS
  FAA_hydrolase  79 eeAedaiaGytllnDvsaRdlqaeekaplgwflgksfdtftpiGpwivtpdeledpe......................dlelrlrvngeevqdsn 152
                    ++ +d+++G++l+nD+saRd+qa+e++plg+flgksf  +t+++ w+++ d+l+                         dl+l +  nge+v++  
     KIR62750.1 207 ADFADHVFGVVLVNDWSARDIQAWEYQPLGPFLGKSF--ATSVSGWVTPLDALAGAFvpapeqdppvveylrdvphvglDLRLAVEWNGERVSEPP 300
                    *************************************..**************9833566889**************8888888888********* PP

                    GGGTTTSHHHHHHH.HHHHH-B-TT-EEEEEES..........................S--EE--TT-EEEEEE.........TTTEEEEEEE CS
  FAA_hydrolase 153 tkdmifspaeliah.lsagltLepGdliltGTpsgv.....ga..............eeeslkflkdgDevevei.........eglGelrnrV 217
                    ++ m+++pa+++ah +++g +L++Gdl ++GT+sg+     g+              ++++++fl+dgD+v+v++           lGe++ ++
     KIR62750.1 301 FATMYWTPAQQLAHlTVNGASLRTGDLYASGTVSGPrrdqvGSfleltwggaepvtvGGAERTFLADGDTVTVTAtapgpdgttIALGEVTGTI 394
                    ***********************************96666611555555555666667899*************98887777665588887776 PP

>> FAA_hydrolase_N  Fumarylacetoacetase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   2.6e-25   2.3e-21       2     107 .]      16     108 ..      15     108 .. 0.93

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 2.6e-25
                      T--EEEEEESSEESEEEEEEETTEEEEHHHHHHTTSS-STGG...SSSGTTSSSSSHHHHHT-HHHHHHHHHHHHHHHBTSHHHHT-HHHHHHH CS
  FAA_hydrolase_N   2 NLPfGvfstkekkeprigvaIGdqvldLsalaeaglfsqleedaeekesvfsqptLnafaalgrevwravRaalqelLsaeeelrdneelreea 95 
                      NLP+Gvf++ +  +pr+gv+IG+ vldL a+++agl+         ++ ++ ++tLnaf+algr+ w+avR++++elL    + ++++ + e +
       KIR62750.1  16 NLPYGVFRSGGG-DPRVGVRIGEFVLDLGAAEAAGLVL--------AAGALGRSTLNAFLALGRPQWTAVRQRVTELL----TDSTHRPAVEPL 96 
                      *********999.9********************9987........47899***************************....55556669**** PP

                      EEEGGGEEEE-S CS
  FAA_hydrolase_N  96 lvpleevemhLP 107
                      lvpl+e+e+ LP
       KIR62750.1  97 LVPLAEAELLLP 108
                      ***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 3391.39
//
Query:       KIR62751.1  [L=160]
Description: polyketide cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-09   36.0   5.8    8.6e-09   35.8   5.8    1.0  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
    0.00043   20.5   0.1    0.00053   20.2   0.1    1.2  1  AHSA1            Activator of Hsp90 ATPase homolog 1-like pro
     0.0036   17.5   0.1     0.0045   17.2   0.1    1.1  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
  ------ inclusion threshold ------
       0.11   12.3   8.5      0.041   13.7   5.7    1.6  2  Trp_oprn_chp     Tryptophan-associated transmembrane protein 


Domain annotation for each model (and alignments):
>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   5.8   1.9e-12   8.6e-09       2     141 ..       2     150 ..       1     152 [. 0.80

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.9e-12
                      EEEEEEEEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSESTSSS....TTTEEEEECCCSSEEEEEEEEEE..TTTTEEEEEEE.SSS-TSEE CS
  Polyketide_cyc2   2 vkvtvsvviaappekVwalvsdfenwprWhpevarveleggggpa....rgvegtvrvggrgtvreelvevd..pegrllsyrivkpvpvanyv 89 
                       +vtv+  i+ap+ + w+l+ d++  + W   v  vel + +gp+    +++e ++r  g gt  ee+v v+  p +r+l      p  + +y+
       KIR62751.1   2 STVTVTEFIEAPAVDLWRLLVDLPVRADWLRTVGGVELLT-PGPLapgtAWRETRTRPDG-GTQAEEFVVVEcvP-PRRLVLAS--PGIGVSYR 90 
                      58999*9******************************998.9998898888888888666.56566655555437.*******9..556678** PP

                      EEEEEEECCET...EE.EEEEEEEEE....E--TT--HHHHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  90 atwtvtpdggg...tr.vtwtgefda....gplggpfekpaaakavkgdleagLerLkar 141
                      +tw +  +      ++ vt   e+ a    g + +++ +++aa+av+g +++ L+ L ++
       KIR62751.1  91 TTWVLRTVQRRrraCTaVTVAQEAVAtapyGRVLALLFGGLAARAVEGTFRRDLADLSRA 150
                      ***99999965566444775555553335777778889******************9886 PP

>> AHSA1  Activator of Hsp90 ATPase homolog 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   1.2e-07   0.00053       2      65 ..      12      81 ..      11     123 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.2e-07
                S-HHHHHHHHH-HHHHHHHEEEEEEEE--......STTEEEEE.EETTTSEEEEEEEEEEEEETTTEEEEE CS
       AHSA1  2 apperVfraltdpellkrWftlteaemdl......rpGgkfrl.rdspdgkefgnegeylevvpperlvyt 65
                ap+ +++r l d    + W  +t+  ++l       pG ++r  r+ pdg+    e ++ e+vpp+rlv+ 
  KIR62751.1 12 APAVDLWRLLVDLPVRADW-LRTVGGVELltpgplAPGTAWREtRTRPDGGTQAEEFVVVECVPPRRLVLA 81
                89999**************.66666777666888889*******999**********************98 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1     1e-06    0.0045       1     120 [.      10     134 ..      10     141 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1e-06
                     ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE.......EEEECSTTSSCEEEEEEEEEEETTTEEECTTCCCCCEEEEEEEECTECCEEE CS
  Polyketide_cyc   1 vpapadqvyalvadvesypeflphcssvevleeaes....glsadlevgfggltesftarvtldppeeitfklvegdfkslegkWtieslppnsg 91 
                     ++apa ++++l+ d     ++l  +  ve+l   +     +++ + +   gg +++ +  v+++pp+++     +    s++++W ++ +++++ 
      KIR62751.1  10 IEAPAVDLWRLLVDLPVRADWLRTVGGVELLTPGPLapgtAWRETRTRPDGGTQAEEFVVVECVPPRRLVLASPG-IGVSYRTTWVLRTVQRRRR 103
                     79*********************************666555555888888888888899999******5555555.8899999********8333 PP

                     .CEEEEEEEEEEE.E-SSCHHHHHHHHHHHH CS
  Polyketide_cyc  92 .gtrtkvalevdf.kfaspllgalvgqvaer 120
                       t+++va e     + +++l+ l g +a r
      KIR62751.1 104 aCTAVTVAQEAVAtAPYGRVLALLFGGLAAR 134
                     4566666655322244444444444444443 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.41   1.8e+03     118     137 ..      28      47 ..       4      64 .. 0.68
   2 ?   13.7   5.7   9.1e-06     0.041       5      73 ..      79     147 ..      77     151 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.41
  Trp_oprn_chp 118 wpvlalaggvllllagvlll 137
                   + +l  +ggv ll  g l+ 
    KIR62751.1  28 ADWLRTVGGVELLTPGPLAP 47 
                   55777777777777666654 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 9.1e-06
  Trp_oprn_chp   5 algAallllasrltWvtvtvsdalggprtvalsGadwapaltalAlvllAaavAvlavrglgrrvvgvl 73 
                   +l++  + ++ r tWv  tv++ + + ++v+++ + +a+a+    l+ll + +A+ av g++rr ++ l
    KIR62751.1  79 VLASPGIGVSYRTTWVLRTVQRRRRACTAVTVAQEAVATAPYGRVLALLFGGLAARAVEGTFRRDLADL 147
                   56666677899****************************************************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1188.60
//
Query:       KIR62752.1  [L=415]
Description: pyrrolo-quinoline quinone [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-15   57.3  26.2    3.8e-07   30.0   8.7    3.2  3  PQQ_2     PQQ-like domain
    1.6e-11   43.6   0.8     0.0016   18.3   0.1    4.7  4  PQQ       PQQ enzyme repeat


Domain annotation for each model (and alignments):
>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   8.7   4.2e-11   3.8e-07      67     216 ..      55     213 ..      45     232 .. 0.59
   2 !   25.7   4.3   8.3e-10   7.4e-06      25     148 ..     157     323 ..     139     324 .. 0.82
   3 !   26.2   0.2   6.1e-10   5.4e-06       2      67 ..     306     367 ..     305     407 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 4.2e-11
       PQQ_2  67 pvvgaplvaegrvvvvasdgqlia...ldaedGkr...lWstqqrseepaelrssaspavagdtvvvgessgklvaldpkdGkvlWerelaaprgtsel 159
                 ++ +apl+ +gr+ v a+ +q++a    d+++  r    Ws ++r   pae++++ ++a +   vv   s+gklvald+++G+v W+    +p    ++
  KIR62752.1  55 RLPAAPLIVDGRLRVYAATRQVYAdqpADSRN--RvspYWS-YRRW--PAEVSGVVADATT---VVSRWSDGKLVALDARTGRVAWQSDGPEPA---AG 142
                 45556788888887777777777744444333..2334677.5555..5776667666644...888888888888888888888888665555...45 PP

       PQQ_2 160 srvgdisgrpvva..........eg.tVyassgqgrllaldlatgrrlwske.iss...inglpildgdlly 216
                 +  +++ + +v a          +g  V++++g++r++ + la grrlws +  ++    ++    +g+l+ 
  KIR62752.1 143 WTARRTGAGTVWAppglflaraaDGrPVLVVAGPQRVAGFALADGRRLWSADvDGGcrdDVA-TTSAGRLVT 213
                 54444444444447777777776446788888888777778888887786662444543222.223333333 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 8.3e-10
       PQQ_2  25 lgggvsravlsggtlfvatgggrlvaldaatGkvlWettlegpvvga.plvaegrvvvva..sdg.qlialdaedGkr..................... 98 
                  g  ++ra  +g+ ++v+ g  r++++  a+G+ lW+++++g  + +  + + gr+v v+  +   ++   d ++G+                      
  KIR62752.1 157 PGLFLARAA-DGRPVLVVAGPQRVAGFALADGRRLWSADVDGGCRDDvATTSAGRLVTVDrcATPvAVEFRDVATGTPttrltpagatadltvtpvgcv 254
                 566778899.666666667************************88885599999998887443335666678999999********************* PP

       PQQ_2  99 ....................lWstqqrse.epaelrssaspavagdtvvvgessgklvaldpkdGkvlWer 148
                                      W  + + +   a+++ +a + ++gd+v vg+++g ++a+++++G++lW r
  KIR62752.1 255 sirsrcrglhaegfadgagrGWL-VGAADpVAAPALDQAGSELDGDRV-VGTAGGVVTARSARTGEELWRR 323
                 **********************9.555552444588888888887776.7899****************87 PP

  == domain 3  score: 26.2 bits;  conditional E-value: 6.1e-10
       PQQ_2   2 egvvsaldaatGaelWrv.dlarplgggvsravlsggtlfvatgggrlvaldaatGkvlWettlegp 67 
                 +gvv+a +a+tG+elWr  dl  +   ++  av + g++   t+++ lv ld+ tG+++ +++le+ 
  KIR62752.1 306 GGVVTARSARTGEELWRRaDL--GPARIL--AV-QPGRVHLLTETRDLVTLDPRTGAQRSRFRLEVG 367
                 799***************777..556677..99.666666667********************9876 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.7e-07    0.0016       9      26 ..     117     134 ..     111     143 .. 0.93
   2 ?    1.7   0.0     0.031   2.8e+02      17      30 ..     184     197 ..     171     198 .. 0.83
   3 !   17.1   0.1   4.2e-07    0.0038       1      25 [.     298     322 ..     298     329 .. 0.92
   4 ?   -0.3   0.0      0.13   1.2e+03      12      29 ..     348     365 ..     337     371 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.7e-07
                 TSEEEEEETTTCCEEEEE CS
         PQQ   9 dGylyAlDadTGkvlWrf 26 
                 dG+l+AlDa+TG+v W+ 
  KIR62752.1 117 DGKLVALDARTGRVAWQS 134
                 9***************95 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.031
                 TTTCCEEEEEESSS CS
         PQQ  17 adTGkvlWrfktgg 30 
                 +++G+ lW+ +++g
  KIR62752.1 184 LADGRRLWSADVDG 197
                 679******99886 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 4.2e-07
                 TEEEEEETTSEEEEEETTTCCEEEE CS
         PQQ   1 gvvylgsadGylyAlDadTGkvlWr 25 
                 g+ ++g+a+G++ A  a+TG++lWr
  KIR62752.1 298 GDRVVGTAGGVVTARSARTGEELWR 322
                 67899*******************8 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.13
                 EEEEETTTCCEEEEEESS CS
         PQQ  12 lyAlDadTGkvlWrfktg 29 
                 l+ lD +TG  + rf+++
  KIR62752.1 348 LVTLDPRTGAQRSRFRLE 365
                 7789999******99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2799.11
//
Query:       KIR62753.1  [L=367]
Description: aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-51  173.5   0.0    8.3e-51  173.3   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    0.00059   18.9   0.0    0.00087   18.3   0.0    1.2  1  Aminotran_5      Aminotransferase class-V
     0.0016   17.8   0.1     0.0023   17.3   0.1    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
     0.0051   15.4   0.0     0.0079   14.8   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
       0.21   10.4   0.0       0.39    9.6   0.0    1.3  1  Alliinase_C      Allinase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.3   0.0   2.3e-54   8.3e-51       3     360 ..      42     359 ..      40     361 .. 0.94

  Alignments for each domain:
  == domain 1  score: 173.3 bits;  conditional E-value: 2.3e-54
                    EEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEE CS
  Aminotran_1_2   3 vinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilv 98 
                     i+L+sne +++    +lp v++a +e   a  + ++y+++    +l++ala+ +g      + ++ ++ +g G+ al+e l +++ + pgde l 
     KIR62753.1  42 AIKLASNEVPYG----PLPGVVEAVAE---AVAGSHRYPDMG-VVALRQALAERHG------VHPD-RIATGCGSVALAEHLVRAT-CLPGDELLY 121
                    69**********....*********77...888889*****9.*************......8888.*******************.8******** PP

                    EESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCB CS
  Aminotran_1_2  99 pdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfv 194
                    +  +++ y  i+  sg++ vr+p  + ++ + dl+a+ +a+++      +t+++lv++p+NPtGt+  ++el   ld + +  +l+++DeaY +fv
     KIR62753.1 122 SWRSFEAYPIIAATSGATSVRVP--NDAGHGHDLDAMAAAVTD------RTRMVLVCNPNNPTGTAVRKAELDRFLDAVGE-DVLVVIDEAYREFV 208
                    ***********************..66999*************......*******************************8.************** PP

                    SSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 195 fgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelrd 290
                     +++  v+  ++  ++pn++++++lsKa+GlaG+R+G++++ ++v+ ++rk+++pf  s ++qa ++aal  a+    e++ + + + ++r+++++
     KIR62753.1 209 TDAE--VPDGLTYLDRPNVVVLRTLSKAWGLAGLRIGFLVAAPEVAAAVRKVVTPFSTSMAAQAGALAALAQAD----EVQRRCALVVAERDRVTE 298
                    *954..233788888899******************************************************99....99**************** PP

                    HHHHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHH CS
  Aminotran_1_2 291 eLaelglkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelv 360
                    +L++   +v asq++++ l +++++    + k++  + gv+v+p   f   g +R+t+  +t++e++ ++
     KIR62753.1 299 ALRKFVPDVPASQANFVWLPLGDRA--VGFGKACEAR-GVIVRP---FPGDG-VRVTI--GTPAENDAFL 359
                    **999******************99..8888888888.******...33355.9****..9999888765 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.4e-07   0.00087      70     177 ..      97     203 ..      79     206 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.4e-07
                  HHH.HHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHH CS
  Aminotran_5  70 tte.ainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklak 166
                  t++ +++l+ + ++++  pgde +++     a       +a + ga+ + +p d++   dld+++++++++t++v ++  +n tGt    +e+ + + 
   KIR62753.1  97 TGCgSVALAEHLVRATCLPGDELLYSWRSFEAYP----IIAATSGATSVRVPNDAGHGHDLDAMAAAVTDRTRMVLVCNPNNPTGTAVRKAELDRFLD 190
                  4443566666666556889999999877776665....5666789999999***********************************988888888888 PP

                  H..TT-EEEEE-T CS
  Aminotran_5 167 k..kgalvlvDaa 177
                  +  +++lv++D a
   KIR62753.1 191 AvgEDVLVVIDEA 203
                  8544899999976 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   6.5e-07    0.0023      22     118 ..      74     170 ..      58     200 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.5e-07
                      SHHHHHHHHHHHHHHT.-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEE CS
  DegT_DnrJ_EryC1  22 gpeveeFEkafaaylg.vkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitertka 114
                      +  v ++ +a+a+ +g +   ia+  G+ Al+  L      pgde++    +F a    ++ +ga+ v v  d + +  d +a++aa+t rt+ 
       KIR62753.1  74 DMGVVALRQALAERHGvHPDRIATGCGSVALAEHLVRATCLPGDELLYSWRSFEAYPIIAATSGATSVRVPND-AGHGHDLDAMAAAVTDRTRM 166
                      5557788899******88899*************************************************988.77888**************9 PP

                      EEEB CS
  DegT_DnrJ_EryC1 115 IlpV 118
                      +l+ 
       KIR62753.1 167 VLVC 170
                      9975 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.2e-06    0.0079      56     175 ..      79     203 ..      70     208 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.2e-06
                      HHHHHHHHHHT-.SEEEEESSHHHHHHH.HHHTTS-TTEEEEEESTSSHHHHHHH.HHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS CS
  Cys_Met_Meta_PP  56 vleeriaaLegg.eaalavssGmaAiaa.ailallkaGdeivvsddlYggtqrll.kkvlkklgievkfvdtsdleelekaikentklvylEtp 146
                      +l +++a+ +g+    +a+ +G  A+a   ++a +  Gde++ s   ++    +  ++ ++ + +  +    +dl+++++a++++t++v++  p
       KIR62753.1  79 ALRQALAERHGVhPDRIATGCGSVALAEhLVRATCLPGDELLYSWRSFEAYPIIAaTSGATSVRVPNDAGHGHDLDAMAAAVTDRTRMVLVCNP 172
                      5666666666664467899999999875156778889*********99975544413345557777788889********************** PP

                      -TTTT----HHHHHHHHHHTT..-EEEEEGT CS
  Cys_Met_Meta_PP 147 tnpllkvvDiekiaklakkag..vlvvvDnt 175
                       np+   v  +++ ++  ++g  vlvv+D +
       KIR62753.1 173 NNPTGTAVRKAELDRFLDAVGedVLVVIDEA 203
                      *****99999999999999988899999986 PP

>> Alliinase_C  Allinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00011      0.39     138     222 ..     164     260 ..     145     290 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00011
                  -EEEEEESS-TTT--.------......-TT-EEEEEE-TT-STTTS-......--S-B-.-SEEEEEHHHHHS-GGG-EEEEEES-HHHHHHHHHHH CS
  Alliinase_C 138 efielvtsPnnPdgl.lreavv......kgseakviyDlayYWPhytp......itskad.edimLftlskltGhaGsrlGWalvkdkevakklveyi 221
                    + lv  PnnP g+ +r+a +       g+++ v+ D ay     t       +t+    + ++L tlsk  G aG r+G+ lv   eva  + + +
   KIR62753.1 164 TRMVLVCNPNNPTGTaVRKAELdrfldaVGEDVLVVIDEAYRE-FVTDaevpdgLTYLDRpNVVVLRTLSKAWGLAGLRIGF-LVAAPEVAAAVRKVV 259
                  4567999*****9964788877555555578888999999852.22221111123443331457899**************8.777788877766655 PP

                  H CS
  Alliinase_C 222 e 222
                  +
   KIR62753.1 260 T 260
                  5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2477.24
//
Query:       KIR62754.1  [L=355]
Description: transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-27   94.5   0.2    7.8e-27   94.2   0.2    1.1  1  RDD       RDD family
    3.6e-08   33.0   9.6    3.6e-08   33.0   9.6    2.6  2  DUF2510   Protein of unknown function (DUF2510)


Domain annotation for each model (and alignments):
>> RDD  RDD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.2   8.6e-31   7.8e-27       1     140 [.     156     319 ..     156     320 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 8.6e-31
         RDD   1 laslgrRllAfliDlvllliislllallivall.....................nakasaneavagslllllllvlllvllvyqllllskkgqTlGkll 78 
                 las+g R++A+liD+  ++++++++++++v+ +                     +++  +  ++ag+l++++ll++++++++y++  ++ +gqTlGk+l
  KIR62754.1 156 LASFGARFVARLIDFGAVFLLNAVVNGWFVYRYveevtpyfrevlrrsmagdtsTDGLPQPGEQAGGLQVAILLIATALWFAYEVPAMAGNGQTLGKRL 254
                 59******************************9****************************************************************** PP

         RDD  79 lglkvvd.edgrklglaqaliRalllllllv.lglslvlllllligflfvlf.srkrqalhDkla 140
                 lg++ v  e+ ++lg+++al R+++l l+++ ++ + ++lll l++++ +lf  + rqalhDk a
  KIR62754.1 255 LGVRAVPvEADQPLGFGRALRRWSTLGLPTLlWYCCGFGLLLQLVDAVSPLFdHPLRQALHDKRA 319
                 *************************999999899999***************99********987 PP

>> DUF2510  Protein of unknown function (DUF2510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   9.6     4e-12   3.6e-08       1      35 []       5      38 ..       5      38 .. 0.96
   2 ?   -4.8   1.8         2   1.8e+04      26      34 ..      43      51 ..      41      52 .. 0.65

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 4e-12
     DUF2510  1 pGWYpDPsgtpgllRyWDGarWTehtapapaappa 35
                pGWY DP ++p++ RyWDG++W +   p+ a+pp+
  KIR62754.1  5 PGWYVDP-ADPDTRRYWDGEGWIGAPIPVDATPPE 38
                9******.**********************99985 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 2
     DUF2510 26 tapapaapp 34
                + p+p+a+p
  KIR62754.1 43 VEPPPPASP 51
                567777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2540.54
//
Query:       KIR62755.1  [L=252]
Description: transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-17   63.4   2.2    3.2e-17   63.1   2.2    1.1  1  RDD       RDD family


Domain annotation for each model (and alignments):
>> RDD  RDD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   2.2   1.8e-21   3.2e-17       1     140 [.      85     243 ..      85     244 .. 0.82

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 1.8e-21
         RDD   1 laslgrRllAfliDlvllliislllallivall....................nakasaneavagslllllllvlll..vllvyqllllskkgqTlGkl 77 
                 las+g+RllAfliD v+  +++l l+l +++ +                    + k++  + v  +ll+ l+lv+l+  + ++y++ +l++ gqTlGk+
  KIR62755.1  85 LASFGDRLLAFLIDSVVAGLVGLTLFLPAMVYVwftvfdqftrtepvdqllgyQPKSFLTDLVLPLLLAELGLVVLMlgLYWLYHVEYLLRSGQTLGKK 183
                 59*************************9999779***************988855555555555555555555555534777888888888******** PP

         RDD  78 llglkvvd.edgrklglaqaliRalllllllvlglslvlllllligflfvlf.srkrqalhDkla 140
                 +++l+vv  + +r l+ + a  R l+ ++       +v   + +++ ++ l  ++ +q+lhDk+a
  KIR62755.1 184 VMKLRVVPlDPTRTLDRGMAGRRYLVQFV-----AATVVPGFNYLDGFWQLGdKPWQQCLHDKFA 243
                 ********999**************8665.....66788888888888888777788******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2017.05
//
Query:       KIR62756.1  [L=401]
Description: 4-hydroxyphenylpyruvate dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-23   81.4   1.7    8.9e-15   55.0   0.0    2.2  2  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    2.9e-14   53.2   0.2    1.1e-05   25.7   0.1    2.3  2  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
    8.3e-08   32.5   1.2     0.0083   16.3   0.2    3.2  3  Glyoxalase_3  Glyoxalase-like domain
    6.8e-06   26.8   0.8      0.013   16.3   0.3    2.4  2  Glyoxalase_6  Glyoxalase-like domain
    2.3e-05   24.6   0.0    6.6e-05   23.1   0.0    1.7  1  Glyoxalase_5  Hydroxyphenylpyruvate dioxygenase, HPPD, N-term


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.5   3.2e-09   1.1e-05       2     109 ..      37     142 ..      36     158 .. 0.85
   2 !   55.0   0.0   2.5e-18   8.9e-15       3     128 .]     204     355 ..     202     355 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.2e-09
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGE CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvk 100
                 +d+v   vg++++++ +Y  ++G++ v   +  +e+++ ++a     +g++ +vl  a  ++a++ +++ ++  +v  ial+v dv++a+ ++ ++g  
  KIR62756.1  37 LDYVHFMVGNAKQAAHYYSTAFGMTCVAYRG--PEQGFRDYAEYVLTSGSARFVLTGAVRPDAPGAEHVTKHSDGVVDIALEVPDVDAAYAHAVAQGAT 133
                 789999*************************..8888888888888888888888888888888885555489************************88 PP

                 EEEEEECHH CS
  Glyoxalase 101 vvaepgrhy 109
                   + p++  
  KIR62756.1 134 GRTAPTDLS 142
                 888877655 PP

  == domain 2  score: 55.0 bits;  conditional E-value: 2.5e-18
                 EEEE..EEESHHHHHHHHHHHHHTSEEEEEEEE...EESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSC.....TSEEEEEEEEEHCHHHHHH CS
  Glyoxalase   3 dhva..llvgdleksldFYtkvLGfklvkktdn...teeteglriaffhaggghielvlneapsgaakhvkkiee.....tvhhvafialdvedvgkal 91 
                 dhv+  +  g +++++dFY++v+Gf    +++     + ++ l++ ++ +g+++++++lne++  ++k++    e     ++ + ++ia +++d+ + +
  KIR62756.1 204 DHVVgnVELGRMDEWVDFYKRVMGFSNMAEFVGddiATDYSALMSKVVANGTRKVKFPLNEPAVARKKSQID--EylefyQGPGAQHIAVATNDILASV 300
                 66664455589***************99999988767777*****************************933..3677889****************** PP

                 HHHHHTTGEEEEEEECHHCTEEEEE..................EEEETTSEEEEE CS
  Glyoxalase  92 drlkeagvkvvaepgrhyfgalysf..................yfrDpdGillei 128
                 d +++agv++ ++p+ +y +    +                  + rD+dG+ll+i
  KIR62756.1 301 DAMRAAGVEFLDTPDSYYDDPELRArigrvrvpieelkarkilVDRDEDGYLLQI 355
                 *******************9998889999***********************997 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.1     3e-09   1.1e-05       3      92 ..      40     133 ..      38     148 .. 0.77
   2 !   25.4   0.0   3.6e-09   1.3e-05      11      97 ..     216     314 ..     210     322 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3e-09
                   EEEE-S-HHHHHHHHHH.TT-EESS--E.EET...TTTEEEEEEEETTEEEEEEEESSTT....-THHHTS-EEEEEEEEES-HHHHHHHHCTTTEE CS
  Glyoxalase_4   3 igivVeDleaavarfsallGvgpwqryrdepq...evdlafallgsgsvqieLieplegp....eflaehgeglhhlaywvddldaavarleeqGfe 92 
                   + ++V + ++a++++s+++G++    yr ++q   ++  +++++gs+     L  +++ +    e++ +h  g+  +a++v d+daa a++ +qG++
    KIR62756.1  40 VHFMVGNAKQAAHYYSTAFGMT-CVAYRGPEQgfrDYAEYVLTSGSAR--FVLTGAVRPDapgaEHVTKHSDGVVDIALEVPDVDAAYAHAVAQGAT 133
                   7899****************95.4556666662224566777777765..44444333222346*******************************85 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 3.6e-09
                   HHHHHHHHH.TT-EESS--E.EETTTTE.....EEEEEEETTEEEEEEEESSTT..-THHH.....TS-EEEEEEEEES-HHHHHHHHCTTTEEEEE CS
  Glyoxalase_4  11 eaavarfsallGvgpwqryrdepqevdl.....afallgsgsvqieLieplegp..eflae.....hgeglhhlaywvddldaavarleeqGfevvq 95 
                   ++ v+++++++G+    ++  ++   d+     +++ +g+ +v+  L ep   +  + ++e     +g+g +h+a++++d+ a+v++++++G+e+++
    KIR62756.1 216 DEWVDFYKRVMGFSNMAEFVGDDIATDYsalmsKVVANGTRKVKFPLNEPAVARkkSQIDEylefyQGPGAQHIAVATNDILASVDAMRAAGVEFLD 312
                   778999999***99998888776554442222245555555599999999998777777778888*****************************998 PP

                   EE CS
  Glyoxalase_4  96 kg 97 
                     
    KIR62756.1 313 TP 314
                   65 PP

>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   2.3e-06    0.0083       2     124 ..      38     158 ..      37     180 .. 0.72
   2 ?    1.2   0.0       0.1   3.6e+02       2      25 ..     204     229 ..     203     236 .. 0.93
   3 !   12.1   0.0   4.2e-05      0.15      67     104 ..     272     327 ..     255     366 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.3e-06
  Glyoxalase_3   2 DHvvlavpdleeaaarfarrlGftvt.pggehpglgtaNalvmfgdg..YlEllavdpeapaperprlfgldrlakgeglhtlalrtddidataarl 95 
                   D v ++v++ ++aa ++ ++ G+t +  +g  +g+  +   v   ++  ++   av p+ap +  +     + +++ +g++++al+++d+da++a++
    KIR62756.1  38 DYVHFMVGNAKQAAHYYSTAFGMTCVaYRGPEQGFRDYAEYVLTSGSarFVLTGAVRPDAPGA--E-----HVTKHSDGVVDIALEVPDVDAAYAHA 127
                   566677777777777777777777554677777777777777774433455444588888873..2.....2345789******************* PP

  Glyoxalase_3  96 raaGvdeagrrvrpdg.....gdlrwrllflade 124
                    a+G     +r+ p +     g++r++++ + ++
    KIR62756.1 128 VAQGA---TGRTAPTDlsdehGTVRFAVIDAYGD 158
                   ****4...45555555555667799998877665 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.1
  Glyoxalase_3   2 DHvvlavp..dleeaaarfarrlGft 25 
                   DHvv  v+   ++e ++ + r +Gf+
    KIR62756.1 204 DHVVGNVElgRMDEWVDFYKRVMGFS 229
                   *******************9999996 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 4.2e-05
  Glyoxalase_3  67 fgld...rlakgeglhtlalrtddidataarlraaGvd...............eag 104
                    ++d   ++ +g+g+ ++a++t+di a ++++raaGv+               +++
    KIR62756.1 272 SQIDeylEFYQGPGAQHIAVATNDILASVDAMRAAGVEfldtpdsyyddpelrARI 327
                   33445444558*************************99866555555544444444 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.3   3.5e-06     0.013       8      91 ..      46     142 ..      39     158 .. 0.79
   2 !    8.4   0.0   0.00099       3.6      10      98 ..     216     320 ..     209     323 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.5e-06
  Glyoxalase_6   8 dpaalaaFwaaalgweveree...aaledpegvgpaaedaatllfqrvpe..........paknrvHldlavedldaevarlvalGArvlreprdgt 91 
                   +++++a ++++a+g++ ++ +   +  +d +   ++ ++a  +l + v+           +    v + l+v+d+da+ a++va GA+  ++p d  
    KIR62756.1  46 NAKQAAHYYSTAFGMTCVAYRgpeQGFRDYAEYVLTSGSARFVLTGAVRPdapgaehvtkHSDGVVDIALEVPDVDAAYAHAVAQGATGRTAPTDLS 142
                   68899*********99988887887777777777777777777777776679999877544444699999******************998887754 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00099
  Glyoxalase_6  10 aalaaFwaaalgweveree.........................aaledpegvgpaaedaatllfqrvpepaknrvHldlavedldaevarlvalGA 81 
                   ++ ++F+++++g++  +e                          + l +p++++++ +    l f + p       H+ +a++d+ a v+++ a+G 
    KIR62756.1 216 DEWVDFYKRVMGFSNMAEFvgddiatdysalmskvvangtrkvkFPLNEPAVARKKSQIDEYLEFYQGPG----AQHIAVATNDILASVDAMRAAGV 308
                   6778899999999999988888888888888888777666777655666666666666666777777777....47********************9 PP

  Glyoxalase_6  82 rvlreprdgthgrvlaD 98 
                   + l++p++      + D
    KIR62756.1 309 EFLDTPDS-----YYDD 320
                   99998877.....3455 PP

>> Glyoxalase_5  Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.8e-08   6.6e-05       4     128 ..      31     168 ..      29     174 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.8e-08
  Glyoxalase_5   4 PlGldGfefvefaapeaealeelf.eklGftavarh......rskdvtlyrqGginfilnee..pdsaaakfarehGpsacalafrvkdakkayera 91 
                   P  ++ +++v f   +a++ ++++  ++G+t va        r  +  +   G+  f+l     pd+  a+  ++h  +++ +a+ v d ++ay +a
    KIR62756.1  31 PFPVKALDYVHFMVGNAKQAAHYYsTAFGMTCVAYRgpeqgfRDYAEYVLTSGSARFVLTGAvrPDAPGAEHVTKHSDGVVDIALEVPDVDAAYAHA 127
                   777888999999988876666655157899999853222111344445667899999998651166777999************************* PP

  Glyoxalase_5  92 lekGakpveketgvme....lkiPaikGiGgsllylvdrye 128
                   +++Ga++ + +t+ ++    ++  +i   G++   lvdr +
    KIR62756.1 128 VAQGATGRTAPTDLSDehgtVRFAVIDAYGDTRHTLVDRSR 168
                   *****988777765432223999***************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3098.16
//
Query:       KIR62757.1  [L=168]
Description: AsnC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-16   60.3   0.1    2.6e-16   59.3   0.1    1.5  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    1.7e-09   37.3   0.9    7.3e-09   35.3   0.6    2.1  2  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    2.2e-08   33.5   0.1    1.1e-07   31.2   0.1    2.0  2  HTH_24          Winged helix-turn-helix DNA-binding
      0.001   18.8   0.1     0.0032   17.2   0.0    1.9  2  HTH_IclR        IclR helix-turn-helix domain
     0.0011   18.9   0.1     0.0063   16.4   0.0    2.2  2  MarR_2          MarR family
     0.0028   17.3   0.0     0.0057   16.3   0.0    1.4  1  HTH_41          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.027   14.4   0.0      0.049   13.5   0.0    1.4  1  TrmB            Sugar-specific transcriptional regulator TrmB
      0.049   13.7   0.0      0.099   12.7   0.0    1.4  1  HTH_Mga         M protein trans-acting positive regulator (MG
      0.069   13.1   0.4       0.22   11.5   0.1    1.8  2  DUF977          Bacterial protein of unknown function (DUF977


Domain annotation for each model (and alignments):
>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.1   1.3e-19   2.6e-16       3      74 ..      75     145 ..      74     146 .. 0.94

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 1.3e-19
                     EEE-GGGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEE CS
  AsnC_trans_reg   3 vslepghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivle 74 
                     v+le ++++ ++ + ++la++peV+e++++tG+ d+l+++v+r++++l+r++++ + + +g++r +t i+l 
      KIR62757.1  75 VTLEISQRLGHDPVTAHLAAIPEVLEAHTITGSSDLLCRIVARSNADLQRVIDQ-IVAYEGIRRASTIIALA 145
                     67777778899*******************************************.**************996 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.6   3.7e-12   7.3e-09       1      41 [.       9      49 ..       9      50 .. 0.98
   2 ?   -1.0   0.0       0.8   1.6e+03      22      35 ..      78      91 ..      76      92 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 3.7e-12
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrL 41
                   LDe+D +++e+  e +Ri + e ++r+G+++ tv++R+++L
     KIR62757.1  9 LDELDARLIELFAEEPRIGVLECSRRLGVARGTVQARLDKL 49
                   8**************************************99 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.8
  HTH_AsnC-type 22 eLAervGlSestvl 35
                   e+++r+G ++ t++
     KIR62757.1 78 EISQRLGHDPVTAH 91
                   999***98887765 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.1   5.7e-11   1.1e-07       1      47 [.       9      55 ..       9      55 .. 0.98
   2 ?   -0.6   0.0      0.51     1e+03      22      31 ..      78      87 ..      76      91 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 5.7e-11
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                lde+d +++el  ++pri   e ++rlg+ ++tv +rl++L++ G+I
  KIR62757.1  9 LDELDARLIELFAEEPRIGVLECSRRLGVARGTVQARLDKLVDRGVI 55
                799*******************************************9 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.51
      HTH_24 22 eLAerlglSp 31
                e+++rlg  p
  KIR62757.1 78 EISQRLGHDP 87
                99****9765 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.6e-06    0.0032       7      47 ..      15      54 ..      14      56 .. 0.94
   2 ?   -2.5   0.0       2.3   4.6e+03      23      36 ..      78      91 ..      78      91 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.6e-06
                HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
    HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGy 47
                ++++++ae+p+  ++ e +rr+g+++ tv   L  Lv +G 
  KIR62757.1 15 RLIELFAEEPR-IGVLECSRRLGVARGTVQARLDKLVDRGV 54
                899********.8*************************996 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.3
                HHHHHHTS-HHHHH CS
    HTH_IclR 23 elArrtglpkStvh 36
                e+++r+g  + t+h
  KIR62757.1 78 EISQRLGHDPVTAH 91
                89999998887777 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.1e-06    0.0063      26      51 ..      30      55 ..      13      68 .. 0.84
   2 ?   -1.0   0.0      0.83   1.6e+03      26      37 ..      78      89 ..      77      91 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.1e-06
                HHHHHHTSSHHHHHHHHHHHHHTTSE CS
      MarR_2 26 elarrlglsksavsrilkrLvaaGLv 51
                e  rrlg+ +++v+ +l++Lv++G +
  KIR62757.1 30 ECSRRLGVARGTVQARLDKLVDRGVI 55
                5579********************87 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.83
                HHHHHHTSSHHH CS
      MarR_2 26 elarrlglsksa 37
                e+ +rlg+++ +
  KIR62757.1 78 EISQRLGHDPVT 89
                8999***99865 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.8e-06    0.0057      11      36 ..      30      55 ..      25      56 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.8e-06
      HTH_41 11 elakeleLSvGlvQkALklLeddkai 36
                e +  l++ +G+vQ+ L +L+d ++i
  KIR62757.1 30 ECSRRLGVARGTVQARLDKLVDRGVI 55
                6678899*****************99 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.5e-05     0.049       6      52 ..       9      55 ..       4      56 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-05
                HHHHCCCHCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSE CS
        TrmB  6 LseyEakvYlaLlklgpatadeiaeelgvprskvYevLrsLedkGlV 52
                L e +a+      ++ +  + e +++lgv r +v+  L +L+d+G++
  KIR62757.1  9 LDELDARLIELFAEEPRIGVLECSRRLGVARGTVQARLDKLVDRGVI 55
                66666666666667788889999**********************87 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     5e-05     0.099       7      45 ..      13      50 ..      10      57 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5e-05
     HTH_Mga  7 klkLlelLteneksltldelakeLglseltlqsdiseLn 45
                +++L+el+ e e+++++ e + +Lg  + t+q ++++L 
  KIR62757.1 13 DARLIELFAE-EPRIGVLECSRRLGVARGTVQARLDKLV 50
                789*******.************************9996 PP

>> DUF977  Bacterial protein of unknown function (DUF977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00011      0.22       9      54 ..       8      53 ..       3      59 .. 0.91
   2 ?   -0.9   0.0      0.77   1.5e+03      13      43 ..     110     140 ..     102     149 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
      DUF977  9 ereelkeriiGlvkkneritisdleritGvgrtsvrkylvdvlerG 54
                +  el +r+i l  ++ ri + +  r +Gv r +v+  l   ++rG
  KIR62757.1  8 QLDELDARLIELFAEEPRIGVLECSRRLGVARGTVQARLDKLVDRG 53
                557899*******************************999999998 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.77
      DUF977  13 lkeriiGlvkkneritisdleritGvgrtsv 43 
                 l+ ri+     + +  i+++++  G+ r s 
  KIR62757.1 110 LLCRIVARSNADLQRVIDQIVAYEGIRRAST 140
                 5556666665555666777777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1357.51
//
Query:       KIR62758.1  [L=555]
Description: fumarate hydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-88  294.6   0.0    4.7e-88  293.9   0.0    1.3  1  Fumerase_C     Fumarase C-terminus
    5.8e-84  281.7   0.0    7.3e-84  281.4   0.0    1.1  1  Fumerase       Fumarate hydratase (Fumerase)
  ------ inclusion threshold ------
      0.074   12.8   0.0       0.14   11.9   0.0    1.4  1  Histone_H2A_C  C-terminus of histone H2A


Domain annotation for each model (and alignments):
>> Fumerase_C  Fumarase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.9   0.0   7.8e-92   4.7e-88       1     205 [.     338     544 ..     338     545 .. 0.97

  Alignments for each domain:
  == domain 1  score: 293.9 bits;  conditional E-value: 7.8e-92
  Fumerase_C   1 Gvflekleeepakllpeveekek.keeavevdLnq..keteeelskykvgtrlllsGkllvaRDaaHkrlkerlekgeelpeyvklkdrviYyaGPvkt 96 
                 Gv+le+le++pa++lp+v+ ++  +e++v+vdLn+  +e+++elsky+v+trl+l+G l+vaRD+aH++++erl++ge++p+y++  d+++YyaGP+kt
  KIR62758.1 338 GVWLERLETDPARYLPDVTDETLdAEQVVRVDLNRpmAEIRAELSKYPVKTRLSLTGPLVVARDIAHAKIAERLDAGEPMPQYLR--DHAVYYAGPAKT 434
                 89***************77666525699*******999*********************************************99..************ PP

  Fumerase_C  97 pedeavgsaGPTTatRmdkyvekllkktgllimlaKgnrskkvleaikkhggvYLgaiGG.aAilakkaikkvevvefeelGmEAiyeievedfpafvv 194
                 pe++a+gs+GPTTa+Rmd+yvek+++++g+++mlaKgnrs +v++++++hgg+YLg+iGG aA la+++i++vev+e++elGmEA+++ievedfpaf+v
  KIR62758.1 435 PEGYASGSFGPTTAGRMDAYVEKFQAAGGSMVMLAKGNRSAQVTRSCQQHGGFYLGSIGGpAARLAQDCIRHVEVLEYAELGMEAVWKIEVEDFPAFIV 533
                 *************************************************************************************************** PP

  Fumerase_C 195 vddkGndlfke 205
                 vddkGnd+f+e
  KIR62758.1 534 VDDKGNDFFAE 544
                 *********87 PP

>> Fumerase  Fumarate hydratase (Fumerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.4   0.0   1.2e-87   7.3e-84       3     269 ..      52     332 ..      50     333 .. 0.94

  Alignments for each domain:
  == domain 1  score: 281.4 bits;  conditional E-value: 1.2e-87
    Fumerase   3 aveealkeastelpedvlealkkalek.EesenakevleqlleNaeiAaeeklplCqDTGiavvfvkigeevevetgdleeaineGvreaykegplRks 100
                 +++ea+++++++l++ +l++l++++++  +s+n+++v+ +ll+Na+iAa + lp+CqDTG+a+v++k g++v + +gd e+ i++Gv++ay++ +lR+s
  KIR62758.1  52 LTAEAMHDIAHFLRPAHLAQLRAIIDDpAASPNDRFVALDLLRNANIAAGGVLPMCQDTGTAIVMGKRGRHVLTDGGDAEA-ISRGVYQAYTKLNLRYS 149
                 6899***********************999******************************************866667666.***************** PP

    Fumerase 101 vvadp.l.erkntgdnlPavihielvp....gdeleitvlakGgGsenksklk.....mlnpsdglegvkkfvletvkeagtnaCpPlvlgvgiGgtse 188
                 ++a+  + e++ntg nlPa++++++ +     d ++++++akGgGs+nks+l+     +lnp     ++++f+ e+++ +gt+aCpP++l+++iGgts+
  KIR62758.1 150 QLAPLtMwEERNTGSNLPAQVELYAEDpdghPDAYKFLFMAKGGGSANKSYLYqetkaLLNP----TRMMQFLEEKLRLIGTAACPPYHLAIVIGGTSA 244
                 **999999****************9976653377*******************999999999....67******************************* PP

    Fumerase 189 eaallakk.al...lrelgeenpdee....laeleeellekinklgiGpqGlGGkttvldvkierlprhiAslpvavnvsCsadRrakv 269
                 e al++ k a+   l+ l+++++       + ele+e+le +++ giG+q +GG+++++dv++ rlprh+As+pva++vsCsadR+a +
  KIR62758.1 245 EYALKTAKyASakyLDALPTQGSMTAhgfrDLELEAEVLELTRNFGIGAQ-FGGRYFCHDVRVVRLPRHGASCPVAIAVSCSADRQAVA 332
                 ****999999989999999999555578888*******************.***********************************975 PP

>> Histone_H2A_C  C-terminus of histone H2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.4e-05      0.14       6      19 ..      92     105 ..      91     109 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.4e-05
  Histone_H2A_C   6 LLggVTIAqGGVLP 19 
                    LL+++ IA GGVLP
     KIR62758.1  92 LLRNANIAAGGVLP 105
                    9************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4092.58
//
Query:       KIR62759.1  [L=63]
Description: hypothetical protein TK50_17470 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 451.24
//
Query:       KIR62760.1  [L=86]
Description: hypothetical protein TK50_17475 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-17   61.2   0.0    6.6e-17   60.9   0.0    1.2  1  GntR      Bacterial regulatory proteins, gntR family


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   3.7e-21   6.6e-17       2      64 .]      14      76 ..       4      76 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 3.7e-21
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                y+q++  Lr+ I +ge+ pG++LPse+ L + +gV r t  +A++ L+aegl++  +g+G++V
  KIR62760.1 14 YRQLAVILRNAIEAGEYPPGSRLPSEKTLTQTYGVARETASKAMDALAAEGLAVMVPGVGWHV 76
                8899999******************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 669.06
//
Query:       KIR62761.1  [L=114]
Description: hypothetical protein TK50_17490 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 905.94
//
Query:       KIR62762.1  [L=466]
Description: aspartate ammonia-lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-98  330.2   0.0    1.7e-98  329.8   0.0    1.1  1  Lyase_1       Lyase
      1e-19   70.7   0.3      1e-19   70.7   0.3    2.3  3  FumaraseC_C   Fumarase C C-terminus
  ------ inclusion threshold ------
       0.17   11.8   0.9        2.3    8.1   0.0    2.8  3  NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half 


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.8   0.0  2.9e-102   1.7e-98       1     312 []      17     341 ..      17     341 .. 0.96

  Alignments for each domain:
  == domain 1  score: 329.8 bits;  conditional E-value: 2.9e-102
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHC.....HHHHHHHHHHHTTSST....HHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHH CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedik.....alaalkkaaakanvdl....keeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnev 90 
                 g+++v+a++l+ ++t+r+ +nf +s+  i+     ala +k aaa++n +l    +e+aaai  a+  v++ g +ddqf+++v+q+gsgt++nmn+nev
  KIR62762.1  17 GEVEVPAEALWRAQTQRAVQNFPISGRGIEpaqikALAQIKGAAAQVNGELgvidAEVAAAIATAAAHVAD-GGYDDQFPIDVFQTGSGTSSNMNTNEV 114
                 7899*********************9988889899*******************99999999999999999.*************************** PP

                 HH....HHTTHSSGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHH CS
     Lyase_1  91 ig....ellgekvepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrer 185
                 i+      lg+ v+pnd+v+ +qSsnD++p +++la+++ + e+L+p l+ L+ al+ k+ ef+ vvk+GrThl dAtPvtlgqe+ +ya++++   er
  KIR62762.1 115 IAtlasRELGRDVHPNDDVNASQSSNDVFPSSIHLAATQFIVEDLIPSLTHLAGALETKSAEFETVVKAGRTHLMDATPVTLGQEFGGYAAQVRYGVER 213
                 **555444459**************************************************************************************** PP

                 HHHHHHHHTCEETTTTTTTSSTTTSCCTHHHHHHHHHHHHHCST.EESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT.TSSEEEEGC CS
     Lyase_1 186 lkellkrllvellgggtavgtglnadpefaelvakelakvtglp.vkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssge.aglvelsla 282
                 l+ +l+  l+el  ggtavgtg+n+   fa +v+++l + tglp + a+n fea  +rDa+ve++g l+++a+ L+k+a+D+r++ sg+ agl el ++
  KIR62762.1 214 LEGALP-RLAELPLGGTAVGTGINTPLGFAAAVIAKLRESTGLPlSEARNHFEAQGARDALVETSGQLRTIAVGLYKIANDIRWMGSGPrAGLRELRIP 311
                 *****5.555666666*********************************************************************************** PP

                 CTSSC-TTSTTTEBTHHHHHHHHHHHHHHH CS
     Lyase_1 283 esepGSSiMPgKvNPvqlElltgvagrvvG 312
                   +pGSSiMPgKvNPv +E++++v+++v+G
  KIR62762.1 312 DLQPGSSIMPGKVNPVVAEAVRQVCAQVIG 341
                 ****************************98 PP

>> FumaraseC_C  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.5   2.5         3   1.8e+04      13      22 ..      74      83 ..      73      84 .. 0.78
   2 ?   -1.5   0.0      0.61   3.6e+03      13      31 ..     242     260 ..     236     263 .. 0.87
   3 !   70.7   0.3   1.7e-23     1e-19       1      54 []     407     465 ..     407     465 .. 0.98

  Alignments for each domain:
  == domain 1  score: -5.5 bits;  conditional E-value: 3
                 HHHHHHHHHH CS
  FumaraseC_C 13 kAakIAkeAl 22
                  Aa+IA  A 
   KIR62762.1 74 VAAAIATAAA 83
                 699**99885 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.61
                  HHHHHHHHHHHHT--HHHH CS
  FumaraseC_C  13 kAakIAkeAlkegktlrea 31 
                  +Aa IAk    +g +l ea
   KIR62762.1 242 AAAVIAKLRESTGLPLSEA 260
                  5899999999999999886 PP

  == domain 3  score: 70.7 bits;  conditional E-value: 1.7e-23
                  GGGGGHHHHHHHHHHHHHHHHHHHT--HHHHHHHTT-......-HHHHHHHT-HHHHH. CS
  FumaraseC_C   1 LVTaLnphIGYekAakIAkeAlkegktlreavlelgl.....lteeeldelldpekMtg 54 
                  +VT+Ln+h+GY++Aa+IAkeAl++   +r++v+++g+     lt+e+lde+ld ++Mt+
   KIR62762.1 407 IVTPLNRHLGYDEAASIAKEALAKEMAIRDVVIARGHvangkLTAEQLDEALDLLRMTH 465
                  8********************************************************97 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.4   2.4e+03      17      32 ..      40      56 ..      30      67 .. 0.76
   2 ?    0.4   0.1       0.1     6e+02      12      36 ..      61      85 ..      54      90 .. 0.76
   3 ?    8.1   0.0   0.00039       2.3      12      33 ..     440     461 ..     435     464 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.4
  NIR_SIR_ferr 17 pnGri.taeqlraladi 32
                   +Gr   ++q +ala+i
    KIR62762.1 40 ISGRGiEPAQIKALAQI 56
                  45554488899999887 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.1
  NIR_SIR_ferr 12 vrlrvpnGritaeqlraladiaeky 36
                    ++ + G i+ae + a+a  a   
    KIR62762.1 61 AQVNGELGVIDAEVAAAIATAAAHV 85
                  5677788******999999888655 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00039
  NIR_SIR_ferr  12 vrlrvpnGritaeqlraladia 33 
                    r +v nG++taeql++  d+ 
    KIR62762.1 440 ARGHVANGKLTAEQLDEALDLL 461
                   6889*************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3669.59
//
Query:       KIR62763.1  [L=86]
Description: hypothetical protein TK50_17505 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 557.16
//
Query:       KIR62764.1  [L=60]
Description: hypothetical protein TK50_17510 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-22   78.6   1.2    2.8e-22   78.5   1.2    1.0  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   1.2   1.6e-26   2.8e-22       1      53 [.       6      58 ..       6      59 .. 0.89

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 1.6e-26
      DUF397  1 atWrKSsySgggggnCVEvaalpda.vavRDSkdpdgpvLtftpaewaaFlagv 53
                a+WrKSs+Sg+++ +CVEva+  +  v+vRDSkd+++pvLt+++++w+aF+a+v
  KIR62764.1  6 AHWRKSSRSGSND-QCVEVATDLPGvVGVRDSKDRSRPVLTIDAHAWRAFVAAV 58
                68*********99.5****555542689************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 491.65
//
Query:       KIR62765.1  [L=181]
Description: conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-16   60.2   7.4      2e-16   59.6   7.4    1.3  1  zf-CGNR   CGNR zinc finger
    3.5e-14   53.6  15.5    5.5e-14   52.9  15.5    1.3  1  ABATE     Putative stress-induced transcription regulator


Domain annotation for each model (and alignments):
>> zf-CGNR  CGNR zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   7.4   2.2e-20     2e-16       1      44 []     134     176 ..     134     176 .. 0.99

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 2.2e-20
                 GEEE--STT---EEE--SSS-----SSHH.HHHHHHHHTTTT-X CS
     zf-CGNR   1 RlkaCaapdCrwvfvDtSrngsrrWCsmraCGnrakvrrhraRr 44 
                 Rl++C++pdC+ v+vD S+n+srr+C+   CGnra+v ++raRr
  KIR62765.1 134 RLRVCDHPDCDNVLVDLSKNRSRRYCDAG-CGNRAAVTAYRARR 176
                 9***************************9.*************7 PP

>> ABATE  Putative stress-induced transcription regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9  15.5   6.1e-18   5.5e-14       4     128 ..      14     129 ..      12     130 .. 0.86

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 6.1e-18
                 HHHHHHH----HHHHHHHTTT-HHHHHH--TTHHHHHH..........HHHHHHHHHHHHHHTHHHH.........HHHHHHHHHS----EEEE-TTS- CS
       ABATE   4 aldlvNTrargggrraDlLttpadLaaWleaagllpagtaaagadaelararaLRealrallaaaaagdpppaaalaalnallaaappaprLvrhddgp 102
                 a  lvNT    gg   + L+++a+L a+l+ +g + + + + +   el+++r+LR +lr+++ a      + ++ + ++nall++a++ p+L rhdd+p
  KIR62765.1  14 AAALVNT----GGSHGEALPDVAALDAFLATHGWTGRHERTEA---ELRAVRDLRLRLRRIWYA------DTDEVVTTVNALLRDAGALPQLIRHDDEP 99 
                 779****....567899******************99877775...68**************95......357899********************999 PP

                 E..............EEES.TT--HHHHHHH CS
       ABATE 103 vdrardwhlla....llat.lAadaadlltg 128
                  + ++  +  a    ++a+ +A+++adl++g
  KIR62765.1 100 YHLHAVPRD-AplptRMAVeAAMALADLVRG 129
                 877655444.1458977778********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1315.51
//
Query:       KIR62766.1  [L=323]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-24   85.9  37.9      4e-12   46.5  12.1    2.1  2  EamA             EamA-like transporter family
     0.0012   18.2   2.0       0.14   11.4   0.9    2.2  2  TPT              Triose-phosphate Transporter family
  ------ inclusion threshold ------
      0.068   12.1   1.7       0.11   11.4   1.7    1.2  1  CRT-like         CRT-like, chloroquine-resistance transporter
       0.09   12.9   1.1        0.2   11.8   1.1    1.6  1  Phage_holin_4_1  Bacteriophage holin family


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5  12.1   8.8e-16     4e-12       3     132 ..       9     139 ..       7     143 .. 0.88
   2 !   45.7  17.7   1.6e-15     7e-12       3     135 ..     155     296 ..     153     298 .. 0.93

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 8.8e-16
        EamA   3 gillallaalfwaiyfvlskil.lrkvspltltfvrfliagill.liiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslits 99 
                 g+ lall+++++a+++++++ l  + +s  +++  r   a+++l ++  l  +g++    +++++++  +gll+++la+ +ff a++++++++a l+ +
  KIR62766.1   9 GLGLALLSTVTFATSGTFARSLiEAGWSAEAVVIARVGSAAAVLaVPAVLALRGRW-DVLRRNLASVGAFGLLAVALAQACFFNAVRYLPVGVALLLEY 106
                 6779***************8873667888899999999666666255555555556.899999************************************ PP

        EamA 100 lePvftlilsvlllgekltlkqllgivlillGv 132
                 l  ++++ + +++ g+++  ++++g v +l+G+
  KIR62766.1 107 LGIILVVGWMWAVHGQRPRRLTVAGSVAALAGL 139
                 *******************************97 PP

  == domain 2  score: 45.7 bits;  conditional E-value: 1.6e-15
        EamA   3 gillallaalfwaiyfvlskillrkvspltltfvrfliagilllii.........allkegklaklslkdwlll.lllgllgtvlafllffyalkktsa 91 
                 g+l+ l aa+  a yfv++ +l   +++++++   + +++++ll++         a + e ++    +++wl   + l+l++ v+a+l  + a + ++a
  KIR62766.1 155 GVLWGLGAAVGLAGYFVIAGRLDDGLPSVAMASAGMGVGAAALLVLglagalplrATFGEVTF-AGQRTSWLVPiAGLSLVAAVVAYLTGIAAARILGA 252
                 99********************************************88887777777777777.777777998889999******************** PP

        EamA  92 snaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                    s++ ++e++f+++ ++l+lge +t+ qllg +li++Gv+l+
  KIR62766.1 253 RLSSFVGLTEVMFAVLVAWLVLGELPTVVQLLGGALIVAGVALV 296
                 ******************************************98 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0019       8.5     146     206 ..       9      69 ..       6      98 .. 0.71
   2 !   11.4   0.9   3.2e-05      0.14      72     140 ..     236     301 ..     216     305 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0019
         TPT 146 gfisAlisnltfslrnifsKkllkklkdldalnlfaiitilslllllPvallveg.vlktps 206
                 g+  Al+s++tf++ + f++ l++      +  + a ++ ++++l +P++l++ g + +   
  KIR62766.1   9 GLGLALLSTVTFATSGTFARSLIEAGW-SAEAVVIARVGSAAAVLAVPAVLALRGrWDVLRR 69 
                 7888******************99943.4556677889999999*******99994333333 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.2e-05
         TPT  72 alvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGvalasvtEl 140
                 a+v +l+ ++a   l++   Sf   v  +e +F+v+++ l+lge +++  +l    iv+Gval  v El
  KIR62766.1 236 AVVAYLTGIAAARILGARLSSF---VGLTEVMFAVLVAWLVLGELPTVVQLLGGALIVAGVALVRVDEL 301
                 4555555555555555555555...5557889*********************************9998 PP

>> CRT-like  CRT-like, chloroquine-resistance transporter-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.7   2.5e-05      0.11      74     142 ..     231     300 ..     215     308 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.5e-05
    CRT-like  74 mgaLDavsgilvvigavstsG.slqvllnqaiipitllasllllkerysliqylGAlviilgvvvvlips 142
                 ++ + av ++l+ i+a ++ G  l ++++ + + + +l++ l+l e   ++q+lG ++i++gv++v   +
  KIR62766.1 231 LSLVAAVVAYLTGIAAARILGaRLSSFVGLTEVMFAVLVAWLVLGELPTVVQLLGGALIVAGVALVRVDE 300
                 566789999***9999998773699**************************************9876655 PP

>> Phage_holin_4_1  Bacteriophage holin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.1   4.4e-05       0.2      13      58 ..     228     274 ..     217     296 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.4e-05
  Phage_holin_4_1  13 lltallllmviDyltGllaaivegk.lsskkglkgiikkvlilllvl 58 
                      +  + l++ v+ yltG++aa++ g  lss++gl+ ++  vl+  lvl
       KIR62766.1 228 IAGLSLVAAVVAYLTGIAAARILGArLSSFVGLTEVMFAVLVAWLVL 274
                      556679999*************6655*******99888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2213.68
//
Query:       KIR62767.1  [L=232]
Description: haloacid dehalogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-14   54.0   0.0    3.8e-14   53.2   0.0    1.4  1  HAD_2           Haloacid dehalogenase-like hydrolase
    5.6e-10   39.9   0.0    8.6e-10   39.2   0.0    1.3  1  Hydrolase       haloacid dehalogenase-like hydrolase
    1.5e-09   37.8   0.0      3e-09   36.8   0.0    1.5  1  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
       0.28   11.6   3.1        2.3    8.6   1.7    2.3  2  HAD             haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   8.6e-18   3.8e-14       1     177 [.       5     193 ..       5     194 .. 0.86

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 8.6e-18
       HAD_2   1 iiFDlDgTlldteeliiqafnelleey.....................glselseeelrkliglslrellrklgeseeeeekieellrkyneekkkkev 78 
                 ++FD D Tlld ++++   +  +lee+                      ++ ls   ++++    l  +l ++g +      +++l   + ++     +
  KIR62767.1   5 VVFDADETLLDLRPAVTGGLVAVLEEMrrltpaaaevtladlesdwgaVFGALSAAPVNEIRRAALARSLARAGLD----AHLDDLAALFFARRFA-LT 98 
                 79******************************99999999999988876777777777777777776666666665....4688888889999999.9* PP

       HAD_2  79 kpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdv.ivtsedvekkKPdpeviekaleklklkkeeviyvGDsp.tDieaakkagikv 175
                 +p++++  +L  L + +y+lg +T+++++a      ++g++  F++ ++  e+   kKP+pe +++++e  ++ + +++yvGDsp +D+ a  +ag+++
  KIR62767.1  99 RPFPDALPALAAL-RPRYTLGYATNGNSRAE-----RCGLTGEFTFeVYAHENGLPKKPAPEFFAAVVEAAGVPPRQIVYVGDSPsHDVVAPLRAGMRA 191
                 *************.99**********99875.....5555555554166666777789***************************************** PP

       HAD_2 176 ia 177
                 ++
  KIR62767.1 192 VW 193
                 99 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   1.9e-13   8.6e-10       3     207 ..       4     185 ..       2     188 .. 0.74

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 1.9e-13
                 EEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHH.HHCHHHHHH.HHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsaalalaaaletg.sehpigkal.vaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrt 99 
                  vvfD d TL++ +p v+  +v +       le     +p ++ +  a  +  +ga+  f++       a    e  +a            s+ ++g +
  KIR62767.1   4 HVVFDADETLLDLRPAVTGGLVAV-------LEEMrRLTPAAAEVtLADLESDWGAV--FGA-----LSAAPVNEIRRAA--------LARSLARAGLD 80 
                 69*****************99999.......33332334444444344444446666..444.....4444444444444........67899999999 PP

                 HHHHTTHHHHHHHHH..HTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCES.STTTSHHHHHHHHHHHTSTGGGEE CS
                 xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 100 vallqaralavftia..dplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdiet.vakpspegkvaaireLqgkpeeva 194
                 + l+  ++ a+f +      +++p+a  a+a+L+ + + ++ +t++n++  +     +G    f +++ + +++  +kp pe + a+++  +++p++++
  KIR62767.1  81 AHLD--DLAALFFARrfALTRPFPDALPALAALRPR-YTLGYATNGNSRAER-----CGlTGEFTFEVYAHENGlPKKPAPEFFAAVVEAAGVPPRQIV 171
                 9999..666666555556778*************77.77********95444.....444447778888888889************************ PP

                 EEESSHH.HHHHHH CS
                 xxxxxxx.xxxxxx RF
   Hydrolase 195 mVGDgvn.Daaala 207
                  VGD++  D+ a  
  KIR62767.1 172 YVGDSPShDVVAPL 185
                 *****998987755 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   6.7e-13     3e-09       3      52 ..     149     198 ..     148     222 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 6.7e-13
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSS CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGv 52 
                      KP+pe++ + +e+ g++p++++++GD++ +D+ +  +aG++ v   +G 
      KIR62767.1 149 KKPAPEFFAAVVEAAGVPPRQIVYVGDSPSHDVVAPLRAGMRAVWLNRGG 198
                     5******************************************9988864 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.7   0.00052       2.3       1      96 [.       5     110 ..       5     124 .. 0.53
   2 ?    2.1   0.0     0.049   2.2e+02     165     182 ..     161     178 ..     127     181 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00052
         HAD   1 alfDfDgTLldgdsle......lllrfllrrgaprlwralreklllal...frellrldraglaellea......llaglseelaaelerfv.aevirp 83 
                 ++fD D TLld  ++       + l+  +rr  p +++  ++ l+ ++   f   + l+ a ++e  +a      + agl+++l++ ++ f+ ++ +  
  KIR62767.1   5 VVFDADETLLDLRPAVtgglvaV-LE-EMRRLTPAAAEVTLADLESDWgavF---GALSAAPVNEIRRAalarslARAGLDAHLDDLAALFFaRRFA-- 96 
                 79**********88888988642.22.3333333334444444444443332...333333333333331113335566666666666666633333.. PP

         HAD  84 klldp..galellaa 96 
                  l +p  +al +laa
  KIR62767.1  97 -LTRPfpDALPALAA 110
                 .33333377777775 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.049
         HAD 165 egegidleevvayGDsps 182
                 e +g ++  +v++GDsps
  KIR62767.1 161 EAAGVPPRQIVYVGDSPS 178
                 4577778889******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1702.96
//
Query:       KIR62768.1  [L=471]
Description: cysteinyl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.7e-106  353.8   0.0   9.4e-106  353.5   0.0    1.1  1  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
    1.7e-09   38.0   0.4    3.5e-09   37.0   0.4    1.5  1  DALR_2        DALR domain
    2.2e-08   33.2   0.0     0.0002   20.2   0.0    2.1  2  tRNA-synt_1g  tRNA synthetases class I (M)
    0.00016   20.8   0.0      0.019   13.9   0.0    2.1  2  tRNA-synt_1f  tRNA synthetases class I (K)
  ------ inclusion threshold ------
        0.1   10.8   0.0        1.1    7.4   0.0    2.0  2  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)


Domain annotation for each model (and alignments):
>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.5   0.0  2.6e-109  9.4e-106       3     298 ..      17     316 ..      15     319 .. 0.95

  Alignments for each domain:
  == domain 1  score: 353.5 bits;  conditional E-value: 2.6e-109
                   --SBTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SB-- CS
  tRNA-synt_1e   3 kpleekkvtlYvCGptvydashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDkiikrareeeksvkelaekfieefkkdleaLnvlkptlep 99 
                   +p e +kv +Y+CG t +   h+Gh Rs v +D+lrr+l a+g++v+f++n+tDidDki+ +a e+++ ++++a   ++++++++++Lnvl+pt+ep
    KIR62768.1  17 VPREAGKVGVYLCGLTLQGPPHIGHLRSGVNYDVLRRWLLARGFEVRFIRNLTDIDDKILVKACEQDRPFWSIAYANERALTAAYRSLNVLPPTYEP 113
                   567889******************************************************************************************* PP

                   BGGGGHHHHHHHHHHHHHTTSEEE-TT..S-EEE-GGG-TTTTTTTT--HHHHHHT----S--S-SSTT-EEEEEE--TTS...--B--TTSSEEE- CS
  tRNA-synt_1e 100 rvsekvdeiielvekliekgyaYavsd..gdvyfdvskkeeYgklskqnleelelgaegevseekkdkkDfaLWkaskege...pswdsPwgkGRPG 191
                   r++ +++e+ el++kli+ g+aY+++d  gdvyfdv + + Yg ls q+ + +++ ++     +k+d++DfaLWk +k++e   + w+sPwg+GRPG
    KIR62768.1 114 RATGHIPEMHELIAKLIDTGHAYPATDgsGDVYFDVASWPAYGALSGQSPDAMQAADDAPE-RGKRDPRDFALWKGAKPDEpadAYWPSPWGRGRPG 209
                   **************************9899*********************9998888766.7****************9955567*********** PP

                   SSHHHHHHHHHHH-SSEEEEEEEGGGTTTHHHHHHHHHHHHSSS--EEEEEEE--EEETTBE--TTTT---BHHHHHT.TS-HHHHHHHHHSS-TTS CS
  tRNA-synt_1e 192 WhieCsvmaskllgseidihsGGiDLafPhhenelaqseaafdkqlvkyflhnghlkiegekmsksLknfitikdvlk.kfdprqlRllllsahyrs 287
                   WhieCs+m  ++lg+e+dih+GG DL+fPhhene+aqs+aa + ++++y++h+g l i g km ksL+n + +  v    ++p +lR++ + ahyrs
    KIR62768.1 210 WHIECSAMCWRYLGEEFDIHGGGLDLTFPHHENEIAQSQAA-GLPFARYWVHHGLLGIGGAKMGKSLGNALDLAYVASlGVRPIELRYYYAAAHYRS 305
                   ***************************************97.569**************************99988763699*************** PP

                   -EEE-HHHHHH CS
  tRNA-synt_1e 288 qldfkeellee 298
                   ++d++e+ l+e
    KIR62768.1 306 HIDYTEDSLRE 316
                   ******99976 PP

>> DALR_2  DALR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.4   9.7e-13   3.5e-09       2      54 ..     347     399 ..     346     407 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 9.7e-13
                 HHHHHTBT--HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHGGGT- CS
      DALR_2   2 FeeaMdDDFNTaeAiavlFelakeiNralkeedkaaasalkallrelaevLGl 54 
                 F +a+dDD+NT +A+avl e+ +e N+al++ d  + +++    r++ ++LG+
  KIR62768.1 347 FVAALDDDLNTSAALAVLQEVLREGNTALAAGDDVTVRTALGSARAMLDILGI 399
                 99*************************888887777777779**********9 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   5.6e-08    0.0002      11      90 ..      34     113 ..      30     143 .. 0.83
   2 !   10.9   0.0   3.8e-05      0.14     306     369 ..     249     312 ..     235     318 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.6e-08
                   SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEEE CS
  tRNA-synt_1g  11 ngklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfdkygr 90 
                   +g++H+Ghl++ ++ D++ R+  +rg ev f+        +i +kA +++     ++  ++++ ++ +++ln+   +y+ 
    KIR62768.1  34 QGPPHIGHLRSGVNYDVLRRWLLARGFEVRFIRNLTDIDDKILVKACEQDRPFWSIAYANERALTAAYRSLNVLPPTYEP 113
                   699*****************************99999999**********999999999999999999999998777764 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 3.8e-05
                   HTT----S-EEEE--EEE--------------HHHHHHH.H-HHHHHHHHHHHS-TTS-EEE-HH CS
  tRNA-synt_1g 306 gaelklpkkvvaheyltvegkKlSkSrgvvvkakealer.ldadllRYylaaeapekkDldfswe 369
                   +a+l + +  v h+ l + g+K+ kS g++ +   ++   + +  lRYy+aa++   + +d++++
    KIR62768.1 249 AAGLPFARYWVHHGLLGIGGAKMGKSLGNALDLAYVASLgVRPIELRYYYAAAHY-RSHIDYTED 312
                   567778888899*********************99999999999*****998554.445666655 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.2e-06     0.019      29      72 ..      29      72 ..      11      79 .. 0.91
   2 !    4.7   0.0    0.0033        12     277     339 ..     266     328 ..     204     335 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.2e-06
  tRNA-synt_1f 29 sGispSGliHiGnlrevltadlvaralrkrgeevrlilisDdmD 72
                   G++  G++HiG lr  +  d+++r l +rg evr+i    d+D
    KIR62768.1 29 CGLTLQGPPHIGHLRSGVNYDVLRRWLLARGFEVRFIRNLTDID 72
                  699***********************************999999 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0033
  tRNA-synt_1f 277 kggekmssSkGnvltledwleva.epevlrflilrrkPkkakkldldleilrlvdeYdklerky 339
                    gg+km +S Gn l l+ + +++  p  lr++++ ++ +++++ + d ++ +    + ++e  +
    KIR62768.1 266 IGGAKMGKSLGNALDLAYVASLGvRPIELRYYYAAAHYRSHIDYTED-SLREWASGFRRIEGFV 328
                   4667**************9998625666*******999999999988.8888888777777655 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.028     1e+02      35      66 ..      34      65 ..      32      70 .. 0.92
   2 ?    7.4   0.0   0.00031       1.1     545     580 ..     252     308 ..     226     322 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.028
  tRNA-synt_1 35 tGslHiGhalaktlkdivirykrmkGkevlyv 66
                  G +HiGh    +  d++ r+   +G+ev++ 
   KIR62768.1 34 QGPPHIGHLRSGVNYDVLRRWLLARGFEVRFI 65
                 5999************************9985 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00031
  tRNA-synt_1 545 ePfkevlvhglvrdeeGrKmSKslgNvidpldvik.....................k 580
                   Pf +  vh  ++   G Km KslgN +d  +v++                      
   KIR62768.1 252 LPFARYWVHHGLLGIGGAKMGKSLGNALDLAYVASlgvrpielryyyaaahyrshiD 308
                  4888888877778889*************9999875555555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 3110.59
//
Query:       KIR62769.1  [L=376]
Description: rRNA methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-36  123.9   0.0    7.7e-36  123.4   0.0    1.3  1  SpoU_methylase  SpoU rRNA Methylase family
    1.1e-16   60.8   0.0    2.5e-16   59.7   0.0    1.6  1  SpoU_sub_bind   RNA 2'-O ribose methyltransferase substrate b


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.0   8.6e-40   7.7e-36       2     141 ..     225     365 ..     224     366 .. 0.96

  Alignments for each domain:
  == domain 1  score: 123.4 bits;  conditional E-value: 8.6e-40
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST.T-SEGCCSHHH. CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl.kgkslseidlk. 94 
                     l v+l++++dp+NlGa++R+a+afga+++++ ++r+a  ++ +a r++aga+  +++++v++l + lk+++++gf +v++++ ++++l++++ + 
      KIR62769.1 225 LLVALDGVTDPRNLGAVIRSAAAFGAQGVFVPERRAA-GITATAWRTSAGAAARVPVAQVTNLTRSLKACQDAGFMVVGLDAdGDTDLYDLEAAv 318
                     789****************************996665.********************************************9999*****8888 PP

                     TTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHH CS
  SpoU_methylase  95 ekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvaill 141
                     ++ ++v+G+E++Gls+ + e +d +v+Ipm  eveSLN +vA+a+ l
      KIR62769.1 319 GPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSEVESLNASVAAAVTL 365
                     ********************************************987 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   2.7e-20   2.5e-16       1      75 [.     133     208 ..     133     209 .. 0.97

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 2.7e-20
  SpoU_sub_bind   1 liyGlhaVleaLksgrriekllvteg.radkrleellklakkrgikvelvdkekLdklsgtanHQGvvaevkpley 75 
                    l+ G+++Vle L+++ + ++l+ + g + d+r++e+++ a++rgi + ++++++Ld+++g++ HQG+ ++v p+ y
     KIR62769.1 133 LLVGRNPVLESLRAQVPATALYTAHGiEIDDRVTEIVRTAADRGIAILEISRAELDRMTGGVLHQGIGLQVPPFAY 208
                    689********************************************************************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2716.04
//
Query:       KIR62770.1  [L=363]
Description: sugar ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-30  105.9   0.0    4.5e-30  104.9   0.0    1.5  1  ABC_tran     ABC transporter
    5.3e-09   36.8   0.1    1.9e-08   35.0   0.1    2.0  1  OB_MalK      MalK OB fold domain
    9.3e-07   28.9   0.7    2.8e-06   27.4   0.2    2.1  2  TOBE_2       TOBE domain
    1.7e-05   25.0   0.1    9.9e-05   22.6   0.1    2.3  2  TOBE         TOBE domain
    7.6e-05   23.0   0.0    0.00013   22.2   0.0    1.4  1  AAA_22       AAA domain
    0.00062   19.7   0.0    0.00096   19.1   0.0    1.3  1  Rad17        Rad17 P-loop domain
    0.00066   19.6   0.0        0.1   12.4   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00086   19.7   0.1     0.0017   18.8   0.0    1.5  1  AAA_16       AAA ATPase domain
     0.0042   17.0   0.0     0.0097   15.8   0.0    1.6  1  RsgA_GTPase  RsgA GTPase
     0.0075   15.7   0.1          1    8.7   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.015   14.5   0.0       0.64    9.3   0.0    2.4  2  Zeta_toxin   Zeta toxin
      0.039   13.9   0.0      0.066   13.1   0.0    1.4  1  ATPase_2     ATPase domain predominantly from Archaea
      0.083   12.5   0.1        0.3   10.6   0.0    1.9  2  AAA_25       AAA domain
        0.1   12.3   0.0       0.25   11.1   0.0    1.6  1  AAA_29       P-loop containing region of AAA domain
       0.11   12.7   0.0       0.39   10.9   0.0    2.0  2  AAA_33       AAA domain
       0.11   12.7   0.0       0.27   11.4   0.0    1.8  1  AAA_28       AAA domain
       0.29   10.8   0.0       0.36   10.5   0.0    1.1  1  AAA_15       AAA ATPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.0   4.3e-33   4.5e-30       2     136 ..      22     163 ..      21     164 .. 0.94

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 4.3e-33
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 ++++l++  ge +++vG++G+GKSt l++lagl++ + G i +d++d+++  l+   + i++++q+  l p+++v+en             e d+++++
  KIR62770.1  22 NQLDLQIGDGEFLVLVGPSGCGKSTSLRMLAGLEDVDDGAIYIDDRDVTH--LPPKARDIAMVFQNYALYPHMSVYENmafalklrktpkdEIDRRVKE 118
                 7899**********************************************..9999*******************************888888888888 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 a+  l+l+e   ++     + LSgGq+qrva+ ra++++p+++l+DEp 
  KIR62770.1 119 AAGLLQLEEYLSRKP----KALSGGQRQRVAMGRAIVREPQVFLMDEPL 163
                 888888888777776....*****************************7 PP

>> OB_MalK  MalK OB fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.1   1.8e-11   1.9e-08       1      52 [.     237     287 ..     237     288 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.8e-11
     OB_MalK   1 GSPaMNflpatveedgvlvegggvtlplpeeq.klalklyagkevilGiRPEh 52 
                 GSPaMN+  +  +e+g  +++ ++ +pl++eq ++a ++  + +v++G+RPE+
  KIR62770.1 237 GSPAMNIKTVPFSEQG--AAFAEMNIPLTREQaEAARAEGGNNKVTVGFRPED 287
                 9***************..7788899*******7778888899**********9 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.9   4.1e+03      49      67 ..     190     209 ..     173     211 .. 0.66
   2 !   27.4   0.2   2.7e-09   2.8e-06       1      76 []     281     355 ..     281     355 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.9
      TOBE_2  49 qpnadr.dsalapGdtVels 67 
                 + ++++  +a++ G +V++ 
  KIR62770.1 190 VYVTHDqVEAMTMGHRVAVM 209
                 34445434789999999886 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 2.7e-09
      TOBE_2   1 laiRPEklrlaaagg.anglsGtVedveylGsstryv..velaggqlvvvrqpnadrdsalapGdtVelswdpddavvl 76 
                 ++ RPE+  l   ++ ++g++ +Ve ve lGs+  ++   +l+g ++ +v++ +++  + ++ GdtV +  ++ +++v+
  KIR62770.1 281 VGFRPEDCDLV--SPtEGGMPVVVELVEDLGSDANVYghAALEGHNERFVVRTDRR--TMPNMGDTVFVKPRAGRTHVF 355
                 678*******4..55346****************9987799***999999888888..49******************8 PP

>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.4   2.5e+03      41      51 ..      20      30 ..      11      39 .. 0.65
   2 !   22.6   0.1   9.4e-08   9.9e-05       3      64 .]     294     354 ..     292     354 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.4
        TOBE 41 saeeLgLapGe 51
                ++ +L+L++G+
  KIR62770.1 20 AVNQLDLQIGD 30
                45566666665 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 9.4e-08
        TOBE   3 arNqlpgtVvvveplg..seveVrvdlggga.tLtArvtrrsaeeLgLapGeeVfalikaakvhl 64 
                 +++  p+ V+ ve+lg  ++v+ +++l+g++   ++r +rr  ++     G++Vf+ + a+++h+
  KIR62770.1 294 TEGGMPVVVELVEDLGsdANVYGHAALEGHNeRFVVRTDRRTMPN----MGDTVFVKPRAGRTHV 354
                 677889***************************************....**************97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.3e-07   0.00013       5      66 ..      31     104 ..      27     167 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.3e-07
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee............erpevvfvtlpsstsskdllrellralgl 66 
                   +lv++G+sG+GK+t+lr+l+   d +  a +            +r+  + ++  ++    +++++++ al+l
  KIR62770.1  31 GEFLVLVGPSGCGKSTSLRMLAGLEDVDDGAIYiddrdvthlppkARDIAMVFQNYALYPHMSVYENMAFALKL 104
                 679*******************9998755555555555555553322222233333333455555555555554 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   9.1e-07   0.00096      46      92 ..      32      79 ..      20     126 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 9.1e-07
       Rad17 46 riLLisGPsGCgkstvvkvLsk.elgiklrewlnpvslkepdnqksdf 92
                + L++ GPsGCgkst +++L+  e + +   +++   + + + +  d+
  KIR62770.1 32 EFLVLVGPSGCGKSTSLRMLAGlEDVDDGAIYIDDRDVTHLPPKARDI 79
                4799****************9623344444455555544555555555 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   9.8e-05       0.1       1      33 [.      33      73 ..      33     137 .. 0.74
   2 ?    5.5   0.0     0.012        12     237     299 ..     136     196 ..      90     199 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.8e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl........drdveglt 33
                + vl+Gp g+GKS+ L+ l +l ++        drdv++l 
  KIR62770.1 33 FLVLVGPSGCGKSTSLRMLAGLEDVddgaiyidDRDVTHLP 73
                579*******************8774444444444444433 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.012
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSp 299
                 lS G+++  a+  a+ r +    ++l DEp ++L+ kl     + + +l++  g+  + +TH+ 
  KIR62770.1 136 LSGGQRQRVAMGRAIVREP---QVFLMDEPLSNLDAKLRVQTRTQIASLQAkLGITTVYVTHDQ 196
                 5777777767777777777...9*************9998888777555555888889999875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.6e-06    0.0017      20      46 ..      27      53 ..      20     148 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.6e-06
      AAA_16 20 rsgrpelvllsGesGvGKsslvrellr 46
                  g++e ++l+G+sG+GKs+ +r+l+ 
  KIR62770.1 27 QIGDGEFLVLVGPSGCGKSTSLRMLAG 53
                568889*****************9984 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.2e-06    0.0097      89     128 ..      20      60 ..       8      71 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.2e-06
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpelelktg 128
                  ++++l  ++ d ++ vlvG+SG GKSt + +l++ +++  g
   KIR62770.1  20 AVNQLDLQIGDgEFLVLVGPSGCGKSTSLRMLAGLEDVDDG 60 
                  56677777766699****************99997666655 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.014        15      25      39 ..      32      46 ..      22      52 .. 0.84
   2 !    8.7   0.0   0.00097         1     113     211 ..     112     206 ..      59     215 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.014
                SEEEEEESTTSSHHH CS
                xxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsn 39
                +f ++vGp G+GKs 
  KIR62770.1 32 EFLVLVGPSGCGKST 46
                6899*********96 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00097
                 ETTEEE-HHHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 113 ingkevtkkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                 i+++  + + + +l e    ++++LSgG+++ va+    Ai  v+   ++l+De  ++LD+k + +  + + + + +  +  + ++++++e +    +v
  KIR62770.1 112 IDRRVKEAAGLLQLEEYLSRKPKALSGGQRQRVAMG--RAI--VREPQVFLMDEPLSNLDAKLRVQTRTQIASLQAKLGITTVYVTHDQVEAMTMGHRV 206
                 555555555555555555567779******987765..344..45556899**********99999999999999888888888888888877665555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00061      0.64      19      65 ..      34      80 ..      30     114 .. 0.90
   2 ?    2.8   0.0     0.056        59      82     114 ..     192     224 ..     182     233 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00061
  Zeta_toxin 19 illgGqpGAGKselaellkdelerqgnvvrldpDdlRelhPeyeeil 65
                ++l+G +G+GKs+ +++l+   + +++++ +d  d+  l P++++i 
  KIR62770.1 34 LVLVGPSGCGKSTSLRMLAGLEDVDDGAIYIDDRDVTHLPPKARDIA 80
                6899**************999899*********99999999999875 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.056
  Zeta_toxin  82 elvekllqeaiengyniivegtlrspdvvkkla 114
                 +  +++ + ++ +++ + ++g l++ d+++ l 
  KIR62770.1 192 VTHDQVEAMTMGHRVAVMLDGVLQQVDTPRALY 224
                 5567899999*****************998765 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.2e-05     0.066      18      61 ..      29      71 ..      23     145 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.2e-05
    ATPase_2 18 epneiyfiYGpegsGKtaLlkeiienledkdkyviyyialrees 61
                +  e++++ Gp g+GK++ l+ ++  led d+  iy+++     
  KIR62770.1 29 GDGEFLVLVGPSGCGKSTSLRMLAG-LEDVDDGAIYIDDRDVTH 71
                5678999*************97765.569999*****9976555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00028       0.3      30      50 ..      28      48 ..       9      53 .. 0.82
   2 ?   -2.0   0.0       2.2   2.3e+03     170     189 ..     176     195 ..     164     200 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00028
      AAA_25 30 lpagelallaGapgtGKttla 50
                +  ge+ +l+G++g+GK+t +
  KIR62770.1 28 IGDGEFLVLVGPSGCGKSTSL 48
                4689***************87 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.2
      AAA_25 170 ealeriarrtgaavllvhHv 189
                 ++++++++++g++++ v H 
  KIR62770.1 176 TQIASLQAKLGITTVYVTHD 195
                 578899999**999999995 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00024      0.25      19      37 ..      28      46 ..      20      51 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
      AAA_29 19 idlkg.atlltGpsGsGKST 37
                i   g + +l+GpsG GKST
  KIR62770.1 28 IGD-GeFLVLVGPSGCGKST 46
                443.35889**********9 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00037      0.39       2      20 ..      34      52 ..      33     135 .. 0.88
   2 ?   -1.6   0.0       2.7   2.8e+03      88     123 ..     301     335 ..     294     351 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00037
      AAA_33  2 vllvGlpGsGKstlaerll 20
                ++lvG++G+GKst ++ l+
  KIR62770.1 34 LVLVGPSGCGKSTSLRMLA 52
                589**********999886 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.7
      AAA_33  88 flklarrlgvpvrivvvetdeetlkeRlakRaangd 123
                 +++l+++lg  ++ v+ ++  e ++eR  +R ++++
  KIR62770.1 301 VVELVEDLG-SDANVYGHAALEGHNERFVVRTDRRT 335
                 577888888.77889999999999999999999754 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00026      0.27       3      20 ..      35      52 ..      33     111 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00026
      AAA_28  3 vitGgestGKTtlleaLa 20
                v++G++++GK+t l+ La
  KIR62770.1 35 VLVGPSGCGKSTSLRMLA 52
                99***************9 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00034      0.36      24      70 ..      31      74 ..      21     142 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00034
      AAA_15 24 e.ltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifen 70
                  + vl+G+ ++GKS+ l++l  + + +    + +i+i++ d+ +   
  KIR62770.1 31 GeFLVLVGPSGCGKSTSLRMLAGLEDVD----DGAIYIDDRDVTHLPP 74
                2599*****************8777766....6777777777766644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2485.44
//
Query:       KIR62771.1  [L=132]
Description: hypothetical protein TK50_17580 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-26   92.9   1.7    1.6e-26   92.4   1.7    1.3  1  HTH_18    Helix-turn-helix domain
      7e-19   67.4   0.0    1.3e-08   34.7   0.0    2.1  2  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   1.7   1.8e-30   1.6e-26       1      80 [.      32     110 ..      32     111 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 1.8e-30
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 la+ ++vs+ ++ r f++ +g tp++yl+r+R+erA+ lL++ t+++v+++++a+GF++l++Fsr f+++ ge+P++yrr
  KIR62771.1  32 LARIAHVSPAHFIRTFRATFGETPHRYLQRRRVERAMYLLTQ-TDRDVTDVCFAVGFASLGTFSRTFHRIVGEPPTAYRR 110
                 89************************************9986.************************************8 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.5e-12   1.3e-08       2      42 .]      20      60 ..      19      60 .. 0.94
   2 !   31.0   0.0   2.2e-11     2e-07       6      42 .]      73     110 ..      71     110 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.5e-12
                HCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC  2 renlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42
                  +++++l i  +A  +++S+ +F+r+F++++G+tP+ y++
  KIR62771.1 20 DRSYAQPLDIPALARIAHVSPAHFIRTFRATFGETPHRYLQ 60
                678999999******************************96 PP

  == domain 2  score: 31.0 bits;  conditional E-value: 2.2e-11
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 +t+  ++d++ ++gf S  +Fsr+F++++G+ P++yr+
  KIR62771.1  73 QTDRDVTDVCFAVGFaSLGTFSRTFHRIVGEPPTAYRR 110
                 78889*******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 992.95
//
Query:       KIR62772.1  [L=139]
Description: glyoxalase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-10   41.5   0.0    2.2e-10   40.8   0.0    1.3  1  Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygena


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   1.2e-14   2.2e-10       6     127 ..      10     131 ..       4     132 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 1.2e-14
                 EEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSC.....TSEEEEEEEEEHCHHHHHHHHHHHTTG CS
  Glyoxalase   6 allvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkiee.....tvhhvafialdvedvgkaldrlkeagv 99 
                 +++v d +++ldFY + LG+++  + d  + + +l+     + ++ i l    +p  +++  +++ e        +  f+  +++d  k+++ l  +gv
  KIR62772.1  10 QIYVLDQDEALDFYVGKLGMEVNTDAD-LGFMRWLTVNLPGDPEREILLEKPGPPALDPATAEQVRElltkgALGGYLFM--TTDDAQKTYEDLVGKGV 105
                 68999**********************.7777999999999999998888888888888887553326663345555555..566666*********** PP

                 EEEEEEECHHCTEEEEEEEEETTSEEEE CS
  Glyoxalase 100 kvvaepgrhyfgalysfyfrDpdGille 127
                 ++++ep+ +++g  ++  +rDp+G+++ 
  KIR62772.1 106 EITDEPTERPYGIDFG--IRDPFGNKIR 131
                 **********998876..9******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 963.60
//
Query:       KIR62773.1  [L=798]
Description: peptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-49  166.3   4.5    5.8e-49  166.3   4.5    3.2  4  Peptidase_M4    Thermolysin metallopeptidase, catalytic domai
    7.4e-46  156.1   0.8    1.6e-45  155.0   0.8    1.6  1  Peptidase_M4_C  Thermolysin metallopeptidase, alpha-helical d
    2.2e-13   49.8   1.4    8.6e-13   47.9   1.4    2.1  1  FTP             Fungalysin/Thermolysin Propeptide Motif
    0.00062   20.3   0.2     0.0032   18.0   0.0    2.4  2  PepSY           Peptidase propeptide and YPEB domain
      0.009   16.3   2.0      0.071   13.4   0.7    2.7  2  Big_3           Bacterial Ig-like domain (group 3)


Domain annotation for each model (and alignments):
>> Peptidase_M4  Thermolysin metallopeptidase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.3   4.5   1.6e-52   5.8e-49       2     146 .]     200     343 ..     199     343 .. 0.96
   2 ?    0.4   0.0      0.24   8.6e+02      53      88 ..     408     441 ..     383     450 .. 0.78
   3 ?   -2.0   0.1       1.2   4.4e+03      44      73 ..     491     521 ..     466     530 .. 0.52
   4 ?   -1.8   0.1       1.1   4.1e+03      44      74 ..     639     672 ..     595     713 .. 0.56

  Alignments for each domain:
  == domain 1  score: 166.3 bits;  conditional E-value: 1.6e-52
                   CCEEECCTSCEEEE-EEETTCCESEETTS..EEEEE-TTSS.TT.-SS-EE-EECTTEC-HHH....-HHHHHHHHHHHHHHHHHHHHHSS-TTTSS CS
  Peptidase_M4   2 gtgkglyggtvslettqsggtyelkdasr..iktydlnnktssskelagtlvtssnnafsegn....etaavdAhygaakvydyYknkfgrnsidnk 92 
                   g+g+g y g v ++tt sg+ty++ d+ r   +t+d+nn ts+      t++t+++n++++g+    ++aavdAh+gaak++dy+kn++grn+i ++
    KIR62773.1 200 GSGTGIYTGAVAIDTTLSGSTYQMIDPVRgnGTTCDMNNGTST-----CTTFTDADNVWGTGAnsnrQSAAVDAHFGAAKTFDYFKNVHGRNGIFGN 291
                   789****************************9********964.....556*********9999999****************************** PP

                   -S-EEEEECETTT---EEE-SSEEEEE---SSSCBSGCGSHHHHHHHHHHHHHH CS
  Peptidase_M4  93 gaklksrVhygknyeNAfwdgsqmtyGdGdgktftkllvalDVvgHEltHgvte 146
                   ga++ srVhyg+ny+NAfwdgs mtyGdG+  +++++lv+lDV+gHE++Hgvte
    KIR62773.1 292 GAGVPSRVHYGNNYVNAFWDGSRMTYGDGS--SNSRPLVSLDVAGHEMSHGVTE 343
                   *****************************9..6679****************97 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.24
                   ECTTEC-HHH-HHHHHHHHHHHHHHHHHHHHHSS-T CS
  Peptidase_M4  53 ssnnafsegnetaavdAhygaakvydyYknkfgrns 88 
                   ss++ +s+++  +  d hy  ++  ++Y n  + ++
    KIR62773.1 408 SSDSCWSTST--KNKDVHYSSGVGNHFYFNLAEGTG 441
                   6788898665..88899******9999998776655 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.2
                   .-SS-EE-EECTTEC-HHH.-HHHHHHHHHH CS
  Peptidase_M4  44 kelagtlvtssnnafsegn.etaavdAhyga 73 
                   ++++++ ++++++ +++ + e +av A++ a
    KIR62773.1 491 NTARAYSLRAATDLYGSCStEYKAVQAAWTA 521
                   1333444555555555444455566665555 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.1
                   ......-SS-E.E-EECTTEC-HHH-HHHHHHHHHHH CS
  Peptidase_M4  44 k.....elagt.lvtssnnafsegnetaavdAhygaa 74 
                   +     ++ g+  ++s n++++ +   ++v A++g++
    KIR62773.1 639 GctgagQKLGNaGFESGNTVWTAS---SGVIAQHGTS 672
                   144444334443477777777733...3555555554 PP

>> Peptidase_M4_C  Thermolysin metallopeptidase, alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.0   0.8   4.4e-49   1.6e-45       1     168 []     346     524 ..     346     524 .. 0.94

  Alignments for each domain:
  == domain 1  score: 155.0 bits;  conditional E-value: 4.4e-49
  Peptidase_M4_C   1 anLeYsgesGAlnEslSDifgalveqyakkknadekdwliGeeivtpkskgdalRsmsnPssdgsspdhykkyvateednggvHlnSgilnkafy 95 
                     a+L+YsgesG+lnE++SDifg +ve+ya+  + d+ d+++Ge+i   + +g++lR+m nPs dgss ++++++    ++n +vH++Sg+ n++++
      KIR62773.1 346 AGLVYSGESGGLNEATSDIFGNMVEFYAAAPS-DPGDYQVGEKINI-NGNGTPLRYMYNPSLDGSSDSCWSTS----TKNKDVHYSSGVGNHFYF 434
                     89***************************998.9**********99.889*******************9999....799*************** PP

  Peptidase_M4_C  96 llaegg..........tktevkvtgigiekaakiyyraltkyltsttdFae.......artaviqaAkdlygaksaevkavkkAfkavgv 168
                      laeg+          + +  +vtgig++ka+ki++ral  y+ts+t++ +       ar+ +++aA+dlyg++s+e+kav++A++av+v
      KIR62773.1 435 NLAEGTgataygtspvCGSAPAVTGIGRAKAEKIWFRALDVYFTSNTSYVNtsnpantARAYSLRAATDLYGSCSTEYKAVQAAWTAVNV 524
                     *****99*******9989999**************************9965333333378899*************************98 PP

>> FTP  Fungalysin/Thermolysin Propeptide Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   1.4   2.4e-16   8.6e-13       2      44 ..      61     103 ..      60     107 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 2.4e-16
                 EEEE-TT-EE-TS-EEEEEEEEETTEEEEEEEEEEEE-TTSSE CS
         FTP   2 efkvvkvetdanGttHvryqQtynGipVfggdlvvhvdkdGkv 44 
                  ++vv++ +d++G +H+ry++ty+G+ V+ggd+v+h +++G+ 
  KIR62773.1  61 AYQVVRTKVDGSGASHTRYTRTYHGLRVYGGDFVIHATANGQY 103
                 689**************************************86 PP

>> PepSY  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         3   1.1e+04      26      37 ..      55      65 ..      36      76 .. 0.60
   2 !   18.0   0.0   8.8e-07    0.0032       1      62 [.     121     191 ..     121     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3
                EEETTEEEEEEE CS
       PepSY 26 deddgrlvYeve 37
                ++ +g  +Y+v 
  KIR62773.1 55 QG-TGAEAYQVV 65
                34.677777765 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 8.8e-07
                 SS-HHHHHHHHHHHSTTEEEEEEEEEEE......TTEEEEEEEEE....EE.TTEEEEEEEETTT--EEEE CS
       PepSY   1 kiseeqAlaiAlaavpgkiieieleded......dgrlvYevelst...aepegpeyevfiDAkTGkvlkk 62 
                 k++  +A+a+A+++++g+ + +  +++       +grl++e  ++    ++ ++   +v  DA TG+ +++
  KIR62773.1 121 KVTSAKAKAAARKEFSGSLTAVGTPELFvdassgKGRLAWETVVTGwkaDKQTPSKLHVITDAVTGALIGS 191
                 68999*********99775553333333466888*******9999899766666669999*******9986 PP

>> Big_3  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       0.2   7.1e+02       7      19 ..     381     393 ..     380     399 .. 0.90
   2 !   13.4   0.7     2e-05     0.071      38      68 .]     598     633 ..     573     633 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.2
       Big_3   7 tyyvGDkldaedl 19 
                 +y+vG+k++  ++
  KIR62773.1 381 DYQVGEKININGN 393
                 6********9987 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2e-05
       Big_3  38 evsg.svdstkaGeytvtvtykg....vsatftVtV 68 
                 ++++ +  st+aG+ytvtvt  g    ++at+t+tV
  KIR62773.1 598 TLTIaTSASTPAGTYTVTVTGTGtsinHTATYTLTV 633
                 455567889******************9*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 5403.89
//
Query:       KIR62774.1  [L=147]
Description: HNH endonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.9e-15   54.6   0.0    1.1e-14   54.0   0.0    1.3  1  HNH_5        HNH endonuclease
    1.7e-11   44.1   0.0    3.1e-11   43.3   0.0    1.4  1  HNH          HNH endonuclease
    1.3e-08   34.6   0.0    3.2e-08   33.3   0.0    1.7  1  HNH_4        HNH endonuclease
  ------ inclusion threshold ------
       0.01   15.2   0.7       0.01   15.2   0.7    1.8  2  zf-ribbon_3  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> HNH_5  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   2.4e-18   1.1e-14       1      54 [.      82     131 ..      82     133 .. 0.93

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 2.4e-18
       HNH_5   1 CiyCgkeiaekelseeHIiPeslGGkltisnlvtlCkkCNqkkgqkvdaalskq 54 
                 C+yCg +      + +H++P+s+GG++t+ n +++C +CNq+kg++++a++++ 
  KIR62774.1  82 CAYCGGPAS----TVDHVLPRSRGGRNTWRNTTAACYACNQRKGDRTPAEAGMP 131
                 *******44....6***********************************99886 PP

>> HNH  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   6.8e-15   3.1e-11       1      47 []      82     123 ..      82     123 .. 0.95

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 6.8e-15
         HNH   1 CeyCgrkfhksealevdHiipisqggaddieNlqllCksCHnkkhdr 47 
                 C yCg +     a++vdH+ p+s+gg++++ N +++C  C+++k+dr
  KIR62774.1  82 CAYCGGP-----ASTVDHVLPRSRGGRNTWRNTTAACYACNQRKGDR 123
                 99***99.....47******************************996 PP

>> HNH_4  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   7.2e-12   3.2e-08      21      54 ..      92     125 ..      82     126 .. 0.96

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 7.2e-12
                 EEESSTTTT---BSGGGEEEES-GGGGTSSSSSS CS
       HNH_4  21 iDHilPrsrskdDsvsNkVLvlrdaNqeKsnrtP 54 
                 +DH+lPrsr+  +++ N + ++  +Nq K++rtP
  KIR62774.1  92 VDHVLPRSRGGRNTWRNTTAACYACNQRKGDRTP 125
                 9********************************9 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.7   2.3e-06      0.01      11      25 ..      74      88 ..      72      88 .. 0.87
   2 ?   -1.9   0.2      0.54   2.4e+03      19      22 ..     113     116 ..     110     121 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.3e-06
  zf-ribbon_3 11 plssddnvCpyCGtk 25
                 +l+ dd++C+yCG++
   KIR62774.1 74 VLRRDDRCCAYCGGP 88
                 6899*********86 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.54
  zf-ribbon_3  19 CpyC 22 
                  C+ C
   KIR62774.1 113 CYAC 116
                  6666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1072.13
//
Query:       KIR62775.1  [L=464]
Description: hypothetical protein TK50_17620 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.41   10.6   2.1       0.71    9.8   2.1    1.3  1  RseC_MucC  Positive regulator of sigma(E), RseC/MucC


Domain annotation for each model (and alignments):
>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.1   3.9e-05      0.71      65     113 ..     347     396 ..     334     400 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 3.9e-05
   RseC_MucC  65 kaallvYllPllllilgallgsall.gssellaalgallglvlgflivrl 113
                 +++++  l+Pll+++++++ +sa++ ++s ++ a++al+gl +g+  +++
  KIR62775.1 347 RGIFWPVLVPLLVVLFAVVGVSAAAaAGSPTTRAAVALVGLGAGLTAIWR 396
                 56677779*****99999999999989999**************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3286.55
//
Query:       KIR62776.1  [L=876]
Description: acetaldehyde dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.4e-115  384.7   1.9   3.4e-115  384.7   1.9    2.3  4  Fe-ADH    Iron-containing alcohol dehydrogenase
    7.3e-26   90.7   4.7    1.5e-21   76.5   6.0    2.1  2  Aldedh    Aldehyde dehydrogenase family
    1.4e-16   61.0   0.3    2.1e-07   30.9   0.0    2.5  2  Fe-ADH_2  Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.13   7.8e+02     310     347 ..      10      47 ..       4      65 .. 0.74
   2 ?   -2.5   0.0      0.28   1.7e+03     289     346 ..      50     109 ..      33     114 .. 0.64
   3 ?   -3.3   0.0       0.5     3e+03      69      91 ..     182     204 ..     178     210 .. 0.83
   4 !  384.7   1.9  5.7e-119  3.4e-115       1     364 []     461     861 ..     461     861 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHTT---SHHHHT.-TT-HHHHHHHHHT CS
      Fe-ADH 310 eeliealrellkelglptsLselg.vdeedldklaeaal 347
                   +++a+ + l + gl+  L+e++ +++e++d+++++a 
  KIR62776.1  10 STELDAMVDALVSDGLK-ALAEYDrFTQEEIDRIVRKAS 47 
                 55666677777777887.799999999999999999983 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.28
                 ....HHHHHHT........T--HHHHHHHHHHHHHTT---SHHHHT.-TT-HHHHHHHHH CS
      Fe-ADH 289 aperlaqlaralgge.sdeeaaeeliealrellkelglptsLselg.vdeedldklaeaa 346
                 a +r+a+la+    e       +++++++ +  +  +   +++ +g ++++++d ++e a
  KIR62776.1  50 ALDRHAELAQLAVTEtGRGVFEDKAVKNIFACEHVTHSMARVRTVGiISRDEIDGIVEIA 109
                 347788888775444422233344555555554555555688888888889999998866 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.5
                 HHHHHHTTS-TT.--EEEEEESH CS
      Fe-ADH  69 eveeaaalareegadvviavGGG 91 
                 +ve+ +al++  g+ +++a GG 
  KIR62776.1 182 SVEATTALMHHPGIATILATGGN 204
                 79999999999999999999995 PP

  == domain 4  score: 384.7 bits;  conditional E-value: 5.7e-119
                 -SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHH..HCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHH CS
      Fe-ADH   1 Ptrivfgkgaleelgellkklgakralivtdkgslkksglldkvlesl..eeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtA 97 
                 P++i+f+++al++l+e  + +   r+ +vtd+ +  ++g++d+v + l  +   i+++++d+vep+p++e+v+++aal+r++++d++ia+GGGs++D+A
  KIR62776.1 461 PSKIYFEPNALRYLAEMPDVH---RVTVVTDATMT-RLGFVDRVNRILqrRPGHIALQIIDDVEPEPSVETVDRGAALMRSFQPDTIIALGGGSAMDAA 555
                 89*********9999877544...9********98.************6557899999***************************************** PP

                 HHHHHHTT..................................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHH CS
      Fe-ADH  98 Kaialllanpe.....vedyl........gegk...akkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrv 180
                 K+++l +++pe     +            +      ++  ++++l+++PTt+GtG+evtp+avitd  +g+k++++d+ l+P++aivDp lt+++P+++
  KIR62776.1 556 KVMWLRYEHPEvvfddL---RekffdirkR--AfafPTLGEKARLVCVPTTSGTGAEVTPFAVITDRRTGKKYPLADYALTPTVAIVDPVLTASMPRAI 649
                 *********97875552...3555676441..2556788888********************************************************* PP

                 HHHHHHHHHHHHHHHHHHHT---TTSSB--HHHHHHHHHHHHHHHHHHHH.........HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHC.CGGGG CS
      Fe-ADH 181 taatglDalahalEayvskkanplsdalaleairliaknleravadgedl.........eareqmllastlaglafsnaglgavHalahalgalfgiph 270
                 +a++g+Dal+ha+Eayvs  an+++d+lal+airl++ nler+v  g+ +         eare+m++a t+ag+af++a lg+vHa++h+lga f+i+h
  KIR62776.1 650 AADSGFDALTHAIEAYVSVYANDFTDGLALHAIRLVFANLERSVTGGD-AgpaatgdaaEARERMHNAGTIAGMAFGSAFLGIVHAMSHTLGATFHIAH 747
                 ********************************************9985.4467888999**************************************** PP

                 GS-HHHHHHHHH........................HHHHHHT.........T--HHHHHHHHHHHHHTT---SHHHHT-TT-....HHHHHHHHHT-T CS
      Fe-ADH 271 glanaillpavlrfna.............eaa.perlaqlaralgge..sdeeaaeeliealrellkelglptsLselgvdee....dldklaeaalkd 349
                 g++na+llp+v+r+n              + + per+a++ar+lg    + +e++e+l++a+++l +++g++ s++++gvde+    +l++ a +a++d
  KIR62776.1 748 GRTNAVLLPHVIRYNGtvpsklsgwpkyeSYRaPERFAEIARTLGLPaaTPAEGVESLAAAVERLRDAVGIEPSFAAIGVDEAafeaALPQQALNAYED 846
                 ****************************844437************9***********************************84555559********* PP

                 SGGGGSSS---HHHH CS
      Fe-ADH 350 rslannpreltaedv 364
                 ++  +npr +  +d+
  KIR62776.1 847 QCAPANPRMPMLDDM 861
                 ********9877765 PP

>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   6.0   2.5e-25   1.5e-21      29     291 ..      15     276 ..       6     290 .. 0.88
   2 !   10.6   0.0   2.4e-05      0.15     360     426 ..     335     404 ..     319     412 .. 0.82

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 2.5e-25
                 HHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHHHHHHHSEEEEEECTTEEEEEEEEE CS
      Aldedh  29 edvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyaelaeklegevlpssegklalvrreP 126
                 + vda v+   +a  ++ + + ee  +i+rka  +  +r+ ela+l ++etG  + e +a +   a++++   ++ ++++   +++ +e   ++   +P
  KIR62776.1  15 AMVDALVSDGLKALAEYDRFTQEEIDRIVRKASVAALDRHAELAQLAVTETGRGVFEDKAvKNIFACEHVTHSMARVRTV--GIISRDEIDGIVEIADP 111
                 5689999999******************************************9998877644444444444444444443..45555788899999*** PP

                 -SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHT....TS-TTSEEE--SSTCCHHHHHHH-TTESEEEEES-HHHHHHH CS
      Aldedh 127 lGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeea....glPkgvlnvvtgsgsevgealvehpevdkvsftGstevgrki 221
                 +Gvv+ ItP   P ++++ k++ al + N +v+   + +  +++  a+ +++a    g P+  ++ +  +  e+  al++hp+++ +  tG++++ r  
  KIR62776.1 112 VGVVAGITPVTNPTSTTIFKALLALKTRNPIVFAFHPSAQRCSVEAARTVRDAavaaGAPEHCVQWIEQPSVEATTALMHHPGIATILATGGNAMVRAA 210
                 *********************************999999999988888888877777***********************************9988888 PP

                 HHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHH CS
      Aldedh 222 akaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklve 291
                 ++a     k+ +    G+ p+ v ++a l++av++iv +  + +G +C + + +++ e ++d+ ++++ +
  KIR62776.1 211 YSA----GKPALGVGAGNVPAYVEASAKLKRAVNDIVLSKAFDNGMICASEQAVILDEAVADAALDEFRA 276
                 775....3678888889**********************************************9998765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 2.4e-05
                 TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSS....SEESEEEEE-SBHHHHHHHHHHS-SSEEEESSS CS
      Aldedh 360 tpdmriaqeEiFGPVlsvikfkdeeeaieiaNdt....eyGLaagvftkdleraervaerleaGnvyiNds 426
                  pd ++ +e    PVl+v+++ + e+ +++a +       G +a ++t+d++ +e++ +r++a  + +N++
  KIR62776.1 335 GPDEPLTRE-KLCPVLAVLRAPTREQGLRYAKEMvefhGLGHSAVIHTEDEALVEEFGQRVKAVRIIWNSP 404
                 555555554.456*************99888764222268****************************997 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   3.5e-11   2.1e-07      12      98 ..     472     562 ..     465     569 .. 0.85
   2 !   26.7   0.9   6.9e-10   4.2e-06      99     247 ..     592     749 ..     586     752 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 3.5e-11
    Fe-ADH_2  12 ellkel.elkkvllvadentkka.agekveeslkea..gikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvsakl 98 
                  +l+e+ ++++v++v+d+++ ++   ++v++ l+++  +i ++++++ve+e+++e+v + ++ +r+ + d ++a+GgG+++D+ak++  + 
  KIR62776.1 472 RYLAEMpDVHRVTVVTDATMTRLgFVDRVNRILQRRpgHIALQIIDDVEPEPSVETVDRGAALMRSFQPDTIIALGGGSAMDAAKVMWLRY 562
                 4566662579*********9999899*******9983356778******************************************986665 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 6.9e-10
    Fe-ADH_2  99 nvpyvsvpTaaSvDGfaspgaslvvd..gkkrtv.akaaaPlaviaDldvlaeAPrrlla.sGvGDllgkytaladwklanevseplaklsaamvqeaa 193
                 + ++v vpT+        p+a ++ +  gkk  +   a +P+  i+D  + a  Pr++ a sG+ D+l   +  + + +an++++ la+ +++ v+ ++
  KIR62776.1 592 KARLVCVPTTSGTGAEVTPFAVITDRrtGKKYPLaDYALTPTVAIVDPVLTASMPRAIAAdSGF-DALTHAIEAYVSVYANDFTDGLALHAIRLVFANL 689
                 678899999999999999999999877899999988899******************9874777.99999999999*********************** PP

    Fe-ADH_2 194 eklve........dkketealeellealalsgigisrpaSGsEHliSHaldmlalkqalHGe 247
                 e+ v          ++  ea e++ +a +++g+++ ++  G  H +SH l +++  +  HG 
  KIR62776.1 690 ERSVTggdagpaaTGDAAEARERMHNAGTIAGMAFGSAFLGIVHAMSHTLGATF--HIAHGR 749
                 ***98554433322336899999*******************************..999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (876 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 5778.28
//
Query:       KIR62777.1  [L=508]
Description: amine oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-29  101.8   0.3    6.9e-29  101.4   0.3    1.1  1  Amino_oxidase   Flavin containing amine oxidoreductase
      4e-13   49.4   0.4    1.2e-12   47.8   0.4    1.9  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    3.1e-11   43.5   5.4      1e-10   41.8   5.4    1.9  1  DAO             FAD dependent oxidoreductase
    8.5e-08   31.8   0.0    2.5e-05   23.7   0.1    2.6  3  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    2.4e-07   30.2   4.4    1.4e-06   27.7   3.6    2.4  3  FAD_binding_2   FAD binding domain
    1.1e-06   28.3   1.0    1.6e-06   27.8   1.0    1.2  1  FAD_oxidored    FAD dependent oxidoreductase
    2.4e-06   28.0   0.1    3.4e-05   24.3   0.9    2.2  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    2.8e-06   26.3   0.3    0.00021   20.1   3.2    2.1  2  HI0933_like     HI0933-like protein
    1.2e-05   25.4   0.8       0.11   12.5   0.0    2.7  2  NAD_binding_9   FAD-NAD(P)-binding
    4.5e-05   22.9   3.1      8e-05   22.0   3.1    1.4  1  FAD_binding_3   FAD binding domain
     0.0002   20.7   0.8    0.00032   20.0   0.8    1.2  1  Thi4            Thi4 family
     0.0018   17.6   1.4     0.0029   16.9   1.4    1.3  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
     0.0025   17.0   2.9     0.0048   16.0   2.9    1.4  1  GIDA            Glucose inhibited division protein A
     0.0041   16.2   0.3     0.0089   15.1   0.1    1.6  2  Lycopene_cycl   Lycopene cyclase protein
  ------ inclusion threshold ------
       0.01   15.1   0.4      0.019   14.3   0.4    1.4  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.013   14.3   0.0      0.093   11.5   0.1    1.9  2  MCRA            MCRA family
       0.26   10.1   2.7        0.4    9.5   2.7    1.2  1  Trp_halogenase  Tryptophan halogenase
       0.29   11.0   1.2       0.46   10.3   1.2    1.3  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   0.3   6.9e-32   6.9e-29       1     452 []      41     486 ..      41     486 .. 0.78

  Alignments for each domain:
  == domain 1  score: 101.4 bits;  conditional E-value: 6.9e-32
                    HHHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEET...T.EEEESS--EEETTTHHHHHHHHHTTCCCCEEEESCC.GCEEEEETTEECCTTEEC CS
  Amino_oxidase   1 laGLaaArqLlsaGfdVtvlEardrvGGRirtvrsd...G.ylielGamwftgagnpllellkelgledslslpdpg.apkrvlskggrefpgdls 91 
                    +aG++aA  L+++G++VtvlEa + +GGR+  ++++   G +  e G++ f++++ +   +l++++ e++   p pg +   +++      ++++ 
     KIR62777.1  41 IAGMSAAVVLAERGVRVTVLEAAPTLGGRLGAWPQEladGvQANEHGFHAFFRQYYNWRSILRRVDPELRFLKPIPGyPILSADWP-----TEEFG 131
                    8*************************************98566677**********************999866666446666665.....55666 PP

                    HH.HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH........HHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTS CS
  Amino_oxidase  92 pv.paewealleqgalsaellsleeklrlgleall........qktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfag 178
                    ++ pa++++ll        ll +  +lrl++ + +             ++  +++++ ++ e l+  +++d  +  +l+e        f++ +f+ 
     KIR62777.1 132 RLpPAPPANLLA-------LLLRSPSLRLADLRAMdrdaalplLTYDPVRTYAEFDDRTADELLNSLRLPD-RARAMLFEV-------FSHSFFNH 212
                    666666777777.......4555566666666666555555654666777888888888888888888888.778888887.......77777776 PP

                    TTTTCBHHHHTCCCCHHHHHTSCCCEE..TTHTHHHHHHHHH...TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S-HHHHH.SS CS
  Amino_oxidase 179 dpselsaklalpllwelegfggslllp..rgGlsqlpealae...elrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvplgvlk.ai 268
                    + + + a +    ++ l g+ ++l +   ++ +++ +++  +   e++g+++r++   ++++r +dg +v   dg+ ++a +Vv++v++++l+  +
     KIR62777.1 213 EAEMSAAEMIAQFHFYLLGNPEGLAFDcpDEDYGSAIWQPLArhvERHGGQVRTGFAATRLDRTPDGWRVSAADGTAYPAGHVVLAVDPPALAaLV 308
                    66777777777777777777777777688666777777666668889**********************************************877 PP

                    EEES...CCSHHHHHHHHHS..EEEEEEEEEEEESSGGSGCSTS.E.CE...CECCCEEETTTEEEEECC....ECCCSTTTEEEEEEEEECHHHH CS
  Amino_oxidase 269 lfsP...plpdekaeairnl..gfgsvnkvilefdrkfwednal.g.qg...vlvseltttlgeafissd....fpsrappgkglvllvyvggdaa 350
                      sP   +  +e ++a+  +  + ++ +++  + d+ +  d ++    g   ++  ++ t+ ++     +     +  ++ g++l l +y  +   
     KIR62777.1 309 AASPvltGAAPELVAAMPAFgtPGPPYAVARYWCDGDV--DAGRaVfSGvsrQPTLDSVTLYHRL----EnesrRWAERTGGSVLELHAYACE--- 395
                    77775544433666666666779999999999999999..4444322223344444444444443....234444555599999999999883... PP

                    HHHTTS-HHHHHHHHHHHHHHHHTGTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGCTTTTTS.HHHHHHHHH CS
  Amino_oxidase 351 neleslsdeelvqavlrdLrklfgeevpepkatlvtrWhtdplargsysyvsvgpghedydplakpegdprlffAGehtsreypgt.vegAilSGl 445
                        +++ eel+++ + +L+ l +    e  +  v+  ++   a    ++++++pg+++++p  ++    +l++AG+ + +++p++ +e    +G+
     KIR62777.1 396 ---PGVPAEELAERMRAELAALWP----EAARLRVRELRARVEA----QAPAFTPGSHARRPGVRT-DAEGLYLAGDGIRTDFPSAlMERSAATGI 479
                    ...455****************99....8899999999977777....6779**************.***************************** PP

                    HHHHHHH CS
  Amino_oxidase 446 raAaril 452
                     aA++il
     KIR62777.1 480 VAANHIL 486
                    ****997 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.4   1.2e-15   1.2e-12       1      67 [.      36     104 ..      36     105 .. 0.90

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 1.2e-15
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE...TT.CEECTS---EEETTHHHHCHHHHCC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev...pg.vrvdygahifhgsgyypnvrrllre 67 
                    +vG+G++G++aA  La++g++v++le+++ lGGr+  +     +g ++ ++g h+f+   +y n+r +lr+
     KIR62777.1  36 VVGGGIAGMSAAVVLAERGVRVTVLEAAPTLGGRLGAWPQelaDGvQANEHGFHAFFR--QYYNWRSILRR 104
                    8*************************************777788867777*******9..58888888776 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   5.4     1e-13     1e-10       2     233 ..      34     330 ..      33     464 .. 0.56

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1e-13
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHH...HHHHHHHHHHSSTTSEEEEEEEEEESS... CS
         DAO   2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlsleal...eelreleeelgididyrrtGllslaad... 92 
                  v++GGGi+G+s+A  La+rg  Vt+le+++ +g g  g+    l+ g+   +++  ++ + ++ +     lr+++ el+  +  + +G+ +l ad   
  KIR62777.1  34 AVVVGGGIAGMSAAVVLAERGvrVTVLEAAPTLG-GRLGAWPQELADGVQANEHG--FHAFFRQYYnwrSILRRVDPELR--FLKPIPGYPILSADwpt 127
                 69********************************.99999999999999767754..44444443300033344444433..22233444444433333 PP

                 .................HHHHHHHH...........................HHHHHHHHTTTTEEEEEHHHHHHHSTT..STTTSEEEEETTEEEEEH CS
         DAO  93 .................eeeleald...........................kllallleagldaelldaeevrelepa..lpgllgalfypdtgqvdp 145
                                                                     + +a+  +  +d ell++ ++ +++ a   + +  ++f+++ + + +
  KIR62777.1 128 eefgrlppappanllalL------LrspslrladlramdrdaalplltydpvRTYAEFDDRTAD-ELLNSLRLPDRARAmlFEVFSHSFFNHE-AEMSA 218
                 333333333333333330......0444444444444444444444444444333333222222.4555533555554333335667777777.55544 PP

                 HHHHHH............................HHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHHHH.HTTCTTT CS
         DAO 146 akltaa............................laraaealGveilegtevtgleeedgkvwgverttp.gendaadavVnaaGawsdll.gllkeld 214
                 a+++a                             lar +e++G+++++g  +t+l+++  ++w+v   ++ g+   a +vV+a  + +  l +l+    
  KIR62777.1 219 AEMIAQfhfyllgnpeglafdcpdedygsaiwqpLARHVERHGGQVRTGFAATRLDRTP-DGWRV--SAAdGTAYPAGHVVLAVDPPA--LaALVAAS- 311
                 444444599999999999999999999999*************************7743.58***..444487655577****99886..31222111. PP

                 SEEEEEEEEEEEEEECCTH CS
         DAO 215 lpispvrgqvlvlkplsek 233
                 + ++++  + ++  p   +
  KIR62777.1 312 PVLTGAAPELVAAMPAFGT 330
                 1224444444444444443 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   2.5e-08   2.5e-05       4     178 ..      35      67 ..      23     111 .. 0.65
   2 ?    4.7   0.0     0.015        15     182     235 ..     246     299 ..     238     302 .. 0.92
   3 ?   -1.8   0.0       1.5   1.5e+03     264     278 ..     448     462 ..     429     475 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.5e-08
                  EEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   4 vviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkkegdeekiayd 101
                  vv+GgG+AG++aa  la+ g++vt++                                                                        
   KIR62777.1  35 VVVGGGIAGMSAAVVLAERGVRVTVL------------------------------------------------------------------------ 60 
                  55555555555555555555555555........................................................................ PP

                  EEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 102 klvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrll 178
                                                                                        ea+++l 
   KIR62777.1  61 ----------------------------------------------------------------------EAAPTLG 67 
                  ......................................................................5554443 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.015
                  -HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 182 dkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvav 235
                  ++++ + l++++e++G +v++g  ++++d+ ++  +v   dg+ ++a  vv+av
   KIR62777.1 246 GSAIWQPLARHVERHGGQVRTGFAATRLDRTPDGWRVSAADGTAYPAGHVVLAV 299
                  6667778899***********************999***************997 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.5
                  SBESSTTEEE-GGGC CS
                  xxxxxxxxxxxxxxx RF
  Pyr_redox_2 264 lrtnvpgiyaiGDva 278
                   rt  +g+y++GD +
   KIR62777.1 448 VRTDAEGLYLAGDGI 462
                  68999999***9976 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   3.6   1.4e-09   1.4e-06       2      37 ..      34      69 ..      33      84 .. 0.92
   2 ?   -1.5   0.0         1     1e+03     140     176 ..     246     284 ..     237     352 .. 0.73
   3 ?   -0.7   0.0      0.57   5.7e+02     360     386 ..     432     458 ..     347     465 .. 0.65

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.4e-09
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37
                   ++V+G+G+AG++AA+ +ae+G +v+v+e ++  gg 
     KIR62777.1 34 AVVVGGGIAGMSAAVVLAERGVRVTVLEAAPTLGGR 69
                   79****************************999985 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1
                    HHHHHHHHHHHHHTCTEEEEESEEEEEEEECTT..EEEE CS
  FAD_binding_2 140 ghallarlvesarkagvdfqerteadeLivedg..rvtG 176
                    g a+  +l+++++++g ++++  +a++L ++ +  rv+ 
     KIR62777.1 246 GSAIWQPLARHVERHGGQVRTGFAATRLDRTPDgwRVSA 284
                    778889999999999999999999999977644454443 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.57
                    .....EEEEEEEES-EEEBETTSBEST CS
  FAD_binding_2 360 fyavkvvpaqhytmgGvetdengrvld 386
                      a  ++p++h    Gv+td++g  l 
     KIR62777.1 432 AQAPAFTPGSHARRPGVRTDAEGLYLA 458
                    245579999999999999999886655 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   1.0   1.6e-09   1.6e-06       3      62 ..      35      94 ..      33     105 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.6e-09
  FAD_oxidored  3 vVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaeeqvvtgiare 62
                  vVvGGg+aG+ AA+  a++G +v ++e  + lGG l +      +g +a+e+  + ++r+
    KIR62777.1 35 VVVGGGIAGMSAAVVLAERGVRVTVLEAAPTLGGRLGAWPQELADGVQANEHGFHAFFRQ 94
                  9*********************************98776666666666555555555555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.9   3.4e-08   3.4e-05       2      35 ..      34      67 ..      33      83 .. 0.88
   2 ?   -0.1   0.0       1.4   1.4e+03      42      74 ..     249     281 ..     242     287 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.4e-08
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                +vvvGgG  g+ +A +lae g +Vtv+e++++l 
  KIR62777.1 34 AVVVGGGIAGMSAAVVLAERGVRVTVLEAAPTLG 67
                79*****************************998 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHTTEEEECSEEEEEEEEETTSEE CS
   Pyr_redox  42 askilqeklekngievllntkveeiegsedgve 74 
                 + + l++++e++g +v+++  +++++ ++dg++
  KIR62777.1 249 IWQPLARHVERHGGQVRTGFAATRLDRTPDGWR 281
                 556688999*****************9999854 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   3.2   2.1e-07   0.00021       2      38 ..      33      69 ..      32      72 .. 0.92
   2 ?    0.5   0.0      0.19   1.9e+02     103     162 ..     241     299 ..     238     316 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.1e-07
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HH CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrK 38
                 + +v+GgG AG+ aA+ +a+rg rV++le+a++lg +
   KIR62777.1 33 EAVVVGGGIAGMSAAVVLAERGVRVTVLEAAPTLGGR 69
                 579****************************999865 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.19
                  ETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE-- CS
  HI0933_like 103 pvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAt 162
                  p++d  + i + l +++++ g ++r+  + ++++++ dg  rv++ +++++ a ++vlA+
   KIR62777.1 241 PDEDYGSAIWQPLARHVERHGGQVRTGFAATRLDRTPDG-WRVSAADGTAYPAGHVVLAV 299
                  667778889999***********************9999.999999************96 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.6   0.00056      0.55       1      45 [.      35      76 ..      35      87 .. 0.83
   2 !   12.5   0.0   0.00011      0.11      99     153 ..     245     299 ..     243     301 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00056
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsep..gagrvwrtd 45
                   ++vG+G++G++++  L++r      +++t+ + +++  g+ ++w ++
     KIR62777.1 35 VVVGGGIAGMSAAVVLAER-----GVRVTVLEAAPTlgGRLGAWPQE 76
                   69***************99.....5********88866666777665 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00011
  NAD_binding_9  99 YlrdlfeellarlpegvtvevhraevvdleeradgqavlladgaslaadaVvLAl 153
                    Y +++++ l++ ++++         +++l++++dg++v  adg+ + a +VvLA+
     KIR62777.1 245 YGSAIWQPLARHVERHGGQVRTGFAATRLDRTPDGWRVSAADGTAYPAGHVVLAV 299
                    666677777777755544444455899**************************96 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   3.1     8e-08     8e-05       2      33 ..      32      63 ..      31      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 8e-08
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekr 33
                   ++ ++VG+G aG+++a +L+e+Gvrv+++e  
     KIR62777.1 32 VEAVVVGGGIAGMSAAVVLAERGVRVTVLEAA 63
                   5789*************************975 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.8   3.3e-07   0.00032      20      58 ..      34      73 ..      31      77 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.3e-07
                EEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T..TTT CS
        Thi4 20 vvivGaGssGLtaayylakkpdlkvailersvspGG..Gaw 58
                 v+vG+G +G++aa +la++ +++v++le+  ++GG  Gaw
  KIR62777.1 34 AVVVGGGIAGMSAAVVLAER-GVRVTVLEAAPTLGGrlGAW 73
                69******************.*************9955555 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.4   2.9e-06    0.0029      23      63 ..      28      66 ..      21      92 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.9e-06
                 ETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHH CS
  AlaDh_PNT_C 23 vpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrpar 63
                 vp  +p + +v+GgG+aG++A+ + ++ g +Vtvl+  p+ 
   KIR62777.1 28 VP--RPVEAVVVGGGIAGMSAAVVLAERGVRVTVLEAAPTL 66
                 55..79999**************************988765 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   2.9   4.8e-06    0.0048       3      28 ..      35      60 ..      33      74 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.8e-06
                EEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  3 iViGgGhAGceAAlaaarlGakvlLi 28
                +V+GgG AG+ AA+ +a++G++v+ +
  KIR62777.1 35 VVVGGGIAGMSAAVVLAERGVRVTVL 60
                8**********************987 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   8.9e-06    0.0089       3      48 ..      35      77 ..      33      97 .. 0.89
   2 ?   -3.2   0.0       3.3   3.3e+03     202     228 ..     388     414 ..     386     418 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.9e-06
  Lycopene_cycl  3 vviGaGpAglslAarlteakpglkvvlieaspsllfpnny.vWsdef 48
                   vv+G+G Ag+s A  l  a+ g++v+++ea+p l  +++   W  e 
     KIR62777.1 35 VVVGGGIAGMSAAVVL--AERGVRVTVLEAAPTL--GGRLgAWPQEL 77
                   8************999..**************99..88888887765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.3
  Lycopene_cycl 202 EeTelaskpeLpadalkkrlaaylral 228
                    E   +a +p +pa++l +r++a l+al
     KIR62777.1 388 ELHAYACEPGVPAEELAERMRAELAAL 414
                    55679999999*********9988775 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.4   1.9e-05     0.019       1      42 [.      35      76 ..      35      78 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg.nignsiyrypke 42
                 +++G+G aG++aa+ l + g+ ++++lE + ++g  +  +p+e
   KIR62777.1 35 VVVGGGIAGMSAAVVLAERGV-RVTVLEAApTLGGRLGAWPQE 76
                 79*******************.7******99999999999986 PP

>> MCRA  MCRA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   9.3e-05     0.093       3      56 ..      33      90 ..      32     102 .. 0.80
   2 ?    0.3   0.0      0.23   2.3e+02     164     234 ..     208     275 ..     200     286 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.3e-05
                EEEEE--SHHHHHHHHHHHHTT---GGGEEEE-SS----------........-------CC CS
        MCRA  3 kaylvGsGiasLaaAvyLirdakvpgenihileelkvaggsldga........gdpekGyvl 56
                +a +vG+Gia+++aAv L +    +g ++++le+ +++gg l  +        + +e+G+++
  KIR62777.1 33 EAVVVGGGIAGMSAAVVLAE----RGVRVTVLEAAPTLGGRLGAWpqeladgvQANEHGFHA 90
                5889**************87....5789***********99877655555555666666665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.23
                 HHHT--TTSBHHHHHHHHHHTGGGGGGSTT-TT-B--SS-HHHHCCHHHHHHHHHTT-EEE-SEEEEEEEE CS
        MCRA 164 ttFafqkwhSalElrrylrrfiheisgledlsglkrtkynqyeslilPlvkyLkeqgVdfqfntkVtdief 234
                 + F  + + Sa+E+   + +f   + g ++  ++++ + +   ++ +Pl+++ +++g +++++   t ++ 
  KIR62777.1 208 SFFNHEAEMSAAEM---IAQFHFYLLGNPEGLAFDCPDEDYGSAIWQPLARHVERHGGQVRTGFAATRLDR 275
                 56777777888888...555544444444444445555444456889***********9999988877765 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.7    0.0004       0.4       3      34 ..      35      63 ..      33      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0004
                    EEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase  3 vivGGGtaGwlaAaalakalkgklevtlvese 34
                    v+vGGG+aG  aA +la+ +   ++vt++e++
      KIR62777.1 35 VVVGGGIAGMSAAVVLAERG---VRVTVLEAA 63
                    8****************999...99****986 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.2   0.00046      0.46       3      32 ..      35      64 ..      33      81 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00046
                EEE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N  3 aviGaGtmGagiaavfasagleVvlvdise 32
                 v+G G+ G + a v+a++g++V++++ ++
  KIR62777.1 35 VVVGGGIAGMSAAVVLAERGVRVTVLEAAP 64
                69***********************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 3300.57
//
Query:       KIR62778.1  [L=160]
Description: cytoplasmic protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 1002.67
//
Query:       KIR62779.1  [L=416]
Description: transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-36  126.5  27.0    1.5e-36  126.1  27.0    1.1  1  AA_permease_2  Amino acid permease
    1.5e-36  126.0  28.6    1.7e-36  125.8  28.4    1.2  1  AA_permease    Amino acid permease
  ------ inclusion threshold ------
          2    7.0  14.0       0.53    8.9   6.8    2.8  2  Aa_trans       Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1  27.0   2.6e-40   1.5e-36       1     397 [.       8     391 ..       8     411 .. 0.82

  Alignments for each domain:
  == domain 1  score: 126.1 bits;  conditional E-value: 2.6e-40
  AA_permease_2   1 lsllsafalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlas 94 
                    l+ ++a+++ +gs++g+g+fv+   +aas+g a +l+ +  ++ + ++ +   a l+++ p sgG yvy+++  g++++f+++w ++++  +++a+
     KIR62779.1   8 LGVRDAVVIGLGSMLGAGVFVVFapAAASAGGAGLLVALALAGFVAFCNATSSARLAARYPESGGTYVYGRERLGPFAGFVAGWGFVVGKTASCAA 103
                    6788999*******999988766668889888866666666666669*********999******************************9999866 PP

  AA_permease_2  95 ilsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpngwpgv 190
                    ++  +++yl          ++  ++++a+a ++ v+++n+rgi ++a++++ l+ +++  +l+++  +gl+ ++++    +    + + + g  gv
     KIR62779.1 104 MALTIGAYL----------WPGRARFVAVAAVAAVTAVNLRGIGKTATATKALVGVVL-AVLALVAGAGLLGGGFDAGRIA--GPGASSSPGAHGV 186
                    666666655..........4456899********************************.5888888888888888766622..2223344477789 PP

  AA_permease_2 191 llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilialsl 284
                    l++ +  +++f+G+  +a   eev+   +++p+a +++l++vl +yl++++++lgv++++ +a ++    ++a ++ a+g + +a++v +++++++
     KIR62779.1 187 LAAAGLLFFAFAGYARIATLGEEVRDpeRTIPRAVPLALGVVLAIYLVLAVVALGVLGPGRLAASAA---PLADVVTAAGLPGLAWVVRAGATVAV 279
                    999999*****************654449**********************************8776...689999999*9*************** PP

  AA_permease_2 285 lgaintavigssrvlealardgvlPrffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphl 379
                     g ++++v+g+ r+l a+ar +  P+ +a v+  +  p ra   +a v+++++   l+    ++      ss+ ++++y+++ ++al l +++ ++
     KIR62779.1 280 TGVLLSLVAGVGRTLLAMARRRDVPHGLAAVHpVRRVPHRAELAVAAVVTVVV---LV---GDVRGAIGFSSCTVLVYYAITNASALTLGRDPGRR 369
                    ********************************88*********9999997653...33...379***********************999995554 PP

  AA_permease_2 380 .kr..pgki.lvaiigalfllf 397
                     +    +   lv+++++ ++l 
     KIR62779.1 370 lPVrlLAVLgLVGCVALAVSLP 391
                    2222211112333333333333 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8  28.4   2.9e-40   1.7e-36       1     360 [.      12     340 ..      12     396 .. 0.84

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 2.9e-40
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  +++vi lg++ G+g+fv  + ++++aG++g+l+a++lag+v f+ + s + +a  +p+sgg+y+y ++ lgp +Gfv G+     ++++ ++ ++a++
   KIR62779.1  12 DAVVIGLGSMLGAGVFVVFAPAAASAGGAGLLVALALAGFVAFCNATSSARLAARYPESGGTYVYGRERLGPFAGFVAGWG----FVVGKTASCAAMA 105
                  579******************************************************************************....4555555555555 PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeeg 196
                   +i+       l+       v ++++ +++ v++++ g++ + +  ++++ ++ + +v   +l gg+  +g     +  +g+      +pg       
   KIR62779.1 106 LTIGAY-----LW-PGRARFVAVAAVAAVTAVNLRGIGKTATATKALVGVVLAVLALVAGAGLLGGGFDAG----RIAGPGA----SSSPG------- 182
                  555444.....22.333355667777777777777777877777666666666666666567777777777....6777777....67788....... PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYv.lsllligllvprndlgllndsasaaspfvifikesgvsvlaplin 293
                    +++++++  ++faf+G+  +a++++Ev+dPe++iP+a+  ++  ++ +Y+ l+++++g+l p     +         p+  + + +g+++la ++ 
   KIR62779.1 183 -AHGVLAAAGLLFFAFAGYARIATLGEEVRDPERTIPRAVPLALGVVLAIYLvLAVVALGVLGPGRLAASA-------APLADVVTAAGLPGLAWVVR 272
                  .99*******************************************9999972555666666666663333.......39****************** PP

  AA_permease 294 aviltaalssansslysasRvlyslakdglaP.kvlkkvskrgvPlraillsmiisllalllaslnla 360
                  a+  +a++++++s+++   R+l ++a+++  P   ++++  r+vP+ra l++++++ +++l+  +  a
   KIR62779.1 273 AGATVAVTGVLLSLVAGVGRTLLAMARRRDVPhGLAAVHPVRRVPHRAELAVAAVVTVVVLVGDVRGA 340
                  ************************************************************99887766 PP

>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   6.8   8.9e-05      0.53       4     248 ..       9     238 ..       6     245 .. 0.64
   2 ?   -3.6   0.7      0.55   3.3e+03     357     365 ..     384     392 ..     373     410 .. 0.45

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 8.9e-05
    Aa_trans   4 salsavlnlikaivGaGvLa.LPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvsy 101
                 ++++av+  + ++ GaGv+   + A +++G  + l++l+l++++ ++ ++  ++++  ++  ++  +Y   g+  lGp + ++ +  ++v     + + 
  KIR62779.1   9 GVRDAVVIGLGSMLGAGVFVvFAPAAASAGGAGLLVALALAGFVAFCNATSSARLAARYP--ESGGTYVY-GRERLGPFAGFVAGWGFVVGKTASCAAM 104
                 567778888888888887641344555555555667777777777777777777777666..45555554.3778888777777777777777777777 PP

    Aa_trans 102 liligdllpaifesffdtlllsnvyfilisaliiipLslipnlskLsyl..Sllalvsslyyivilvlvvaelvklelkgvseetvkkasklkglflai 198
                  ++ig     ++++        ++ f++++a++ ++   ++ + k   +  +l+++v+ ++  ++++     ++  ++  ++  +++++   +g++ a+
  KIR62779.1 105 ALTIGAY---LWPG--------RARFVAVAAVAAVTAVNLRGIGKTATAtkALVGVVLAVL--ALVAGAGLLGGGFDAGRIAGPGASSSPGAHGVLAAA 190
                 7766653...3554........455555555555554455555544333113333333332..222223333333333334444446667778****** PP

    Aa_trans 199 giivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlv 248
                 g + FAf+g a + ++ +e++dp+   ++ +++ l+  ++ ++y+++++v
  KIR62779.1 191 GLLFFAFAGYARIATLGEEVRDPER--TIPRAVPLALGVVLAIYLVLAVV 238
                 ************************9..588999999999*****999987 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.55
    Aa_trans 357 tplsfilPa 365
                 + l++ lP 
  KIR62779.1 384 VALAVSLPL 392
                 444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 2498.97
//
Query:       KIR62780.1  [L=256]
Description: PA-phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-10   38.9   3.4      1e-09   38.3   2.8    1.6  1  PAP2      PAP2 superfamily
  ------ inclusion threshold ------
      0.042   13.5  14.3       0.55    9.9  14.0    2.7  1  PAP2_3    PAP2 superfamily


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   2.8   1.1e-13     1e-09      17     132 ..     115     233 ..      97     236 .. 0.74

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 1.1e-13
        PAP2  17 svlKdlvgrpRPfflae..etkldtqvstletseskeakesfPSgHsafafalalllalllrrkrkkig.lvllalillllavlvalsRlylgvHflsD 112
                 + lK + +r  P +  +  + ++ + v  + +++  +   s+PSgH a+a +++ ++a+ll  + + +  +++  li ++  +   ++  yl++H+l+D
  KIR62780.1 115 GPLKLWTDRAAPTASVKppFLPPEEAVRIFNDLPAGAYAMSYPSGHVANAIVWYGVIAALLVALTAGRLrPTAHRLIRFAPPAILLVTTTYLNYHWLTD 213
                 455666666555544430023333333333333335566788********************999998888888888899999999************* PP

        PAP2 113 vlaGlliGialaalayrlvq 132
                  la+ll+G++l  l++r+ +
  KIR62780.1 214 GLAALLLGLLLDRLLHRVPW 233
                 ***********999999876 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  14.0   6.2e-05      0.55     127     186 ..     156     223 ..      62     225 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 6.2e-05
      PAP2_3 127 fPSlHva.........wallvalalwrlrrkrllrvlalllnvlmivatvatgnHYlvDviaGvalalv 186
                  PS Hva          allval++ rlr++   r++  + +++++v+t ++  H l+D +a+++l+l+
  KIR62780.1 156 YPSGHVAnaivwygviAALLVALTAGRLRPTA-HRLIRFAPPAILLVTTTYLNYHWLTDGLAALLLGLL 223
                 46666551111111116788999999999998.********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1817.63
//
Query:       KIR62781.1  [L=369]
Description: N-acetylglucosamine-6-phosphate deacetylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-29  102.6   4.8    3.3e-29  102.3   4.8    1.1  1  Amidohydro_1  Amidohydrolase family
    3.4e-09   36.7  12.7    1.2e-07   31.6   0.3    3.2  3  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   4.8   3.7e-33   3.3e-29       2     343 ..      43     367 ..      42     368 .. 0.83

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 3.7e-33
                   EEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH......HHHHHHHHHHT.SSSEEEEEEESSEGGSGCC CS
  Amidohydro_1   2 vlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst......giealleaaee.lplglrilggkvsldrgsa 91 
                   ++PG++D+H+H+ +++          +     a  ++++++ +l++Gttt +++     +      +++a +  +ee +  g++++g+++s +r  a
    KIR62781.1  43 IVPGFVDMHTHGGGGH----------TFTTGDAGSARQAAAFHLGHGTTTLLASLVSS-PfelmraATAAYRPLVEEgTLAGVHFEGPYLSAARCGA 128
                   89*************9..........5555668899999*****************64.3454444444444455559889************9666 PP

                   CSHHHHHHHHHHHHHHHHHHCTTTCEE.EEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCC...... CS
  Amidohydro_1  92 etskasreklkagaaetikgkadgvvk.valapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaes...... 181
                   +++  +r   +a+  e+i   ++g+v  v+lap+ + a++  ++k +          v++ +++t++++ +++aa + ++  gthl + +       
    KIR62781.1 129 QNPQFLRDPSVAELTELIE-LGGGAVRmVTLAPERDGALE--AIKLLT------AHRVVAAVGHTDATYDQTRAAVAAGASVGTHLFNGMRpvhhre 216
                   6777777777788777776.67899999******999996..665555......45677888888999999999999999********999****** PP

                   .......HHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEE.........HHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHHH CS
  Amidohydro_1 182 .......lglldeiklilahgvhltpteaellkerlkeagva.........hcpfsnsilrsgrealrkaldeGvkvglgtDgaasgnslnlleelr 262
                          l+++++++ ++a+gvhl++  ++ + + +   + a           p+ +  l+ +   +++ + +     l+ Dga +g++l++   lr
    KIR62781.1 217 pgpvvalLDAPNVVCELVADGVHLHDGMLTFVTATAGPERAAlitdamsaaGMPDGEYELGGQAVTVADGVAR-----LAADGAIAGSTLTMDAALR 308
                   *************************5534444444444444422233555566777777*************9.....**************888** PP

                   HHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEEETTEE CS
  Amidohydro_1 263 lalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgnvkkvivkGkl 343
                   +a+           ++g++ ++a rm+ + +A+a+gl d+vG+++vG +ADlvv+            +d nv++v+ +G +
    KIR62781.1 309 HAV-----------HAGVPMADACRMVATTPARAIGLGDRVGALQVGLRADLVVL-----------DDDLNVVRVMRGGSW 367
                   ***...........*****************************************...........99********99976 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   1.3     2e-05      0.18       7      25 ..      40      56 ..      39     101 .. 0.79
   2 ?    0.5   0.8     0.037   3.3e+02     228     236 ..     239     247 ..     132     314 .. 0.45
   3 !   31.6   0.3   1.3e-11   1.2e-07     407     452 ..     314     359 ..     300     363 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2e-05
  Amidohydro_3  7 GrlvlPGFvDsHtHlaggg 25
                  G   +PGFvD+HtH  ggg
    KIR62781.1 40 GHWIVPGFVDMHTH--GGG 56
                  66679*********..444 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.037
  Amidohydro_3 228 eltigavkl 236
                   +l +g++  
    KIR62781.1 239 HLHDGMLTF 247
                   333333333 PP

  == domain 3  score: 31.6 bits;  conditional E-value: 1.3e-11
  Amidohydro_3 407 elsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldv 452
                    +++ +a +++ ++pA+a+gl dr G L+vG +ADlvvld+d+  v
    KIR62781.1 314 GVPMADACRMVATTPARAIGLGDRVGALQVGLRADLVVLDDDLNVV 359
                   68999***********************************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2526.67
//
Query:       KIR62782.1  [L=339]
Description: ROK family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-56  190.4   4.4    5.6e-56  190.2   4.4    1.0  1  ROK         ROK family
  ------ inclusion threshold ------
       0.12   12.1   0.1       0.21   11.3   0.1    1.4  1  Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.2   4.4   6.3e-60   5.6e-56       2     293 ..      14     337 ..      13     338 .. 0.92

  Alignments for each domain:
  == domain 1  score: 190.2 bits;  conditional E-value: 6.3e-60
                 EEEEE-SSEEEEEEEETTS-EEEEEEE....EEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCCCCTTHHHHHHHHH CS
         ROK   2 igidiGgtkialalvdeegeilarekv....etptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitwenfdlvekleerl 96 
                 +++d+Ggt +++alv  +g ++++e+      +  + ++et+ d+ + l  +a +   + +a+gi++pG++++  g +v  +n++ ++++l +  ++rl
  KIR62782.1  14 VALDVGGTGMKCALVRPDGSTVHTERHptdaGRGPDAVVETILDVAEGLAGKARADGLDPVALGIAVPGVVDEAAGVAVWSANVGFRDVPLRDLAAARL 112
                 79*************************3333334445555555555555555555555678************************************** PP

                 TS-EEEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHHCHTC..... CS
         ROK  97 nvpvevenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqgClEtlasgralekraqq..... 190
                 ++p+ + +Dv+   laEa +ga  ++  v++v +gtG+ a+ +++g + tG++G age+GHi + p g++cgCG+ gClE++as  a+++r+ +     
  KIR62782.1 113 GLPTALGHDVRVGGLAEARLGAGRGTGHVLFVAIGTGIAAAHVVDGVAATGAHGAAGEIGHILVRPGGPRCGCGRDGCLEAVASASAIARRYAEatgag 211
                 *************************************************************************************************** PP

                 .........................CGTTS-HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHH.HHHHHHHHHCCT CS
         ROK 191 .........................kgekleakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadkll.eairklvkkyln 263
                                          +g  ++a+++  +a  g++ a+ v+ + +e+la ++a+ ++l+d +a+v+gGg+ +a   l +++r+++++++ 
  KIR62782.1 212 ltgtgptgaagggglaggglaggglAGTPASAADVADRAAAGEPAAARVWAEAVEALADGLATGQSLYDVEAVVVGGGLAQAGPRLfDPLRAALHERMT 310
                 *********************************************************************************998777*******99875 PP

                 TTTCCCT-EEEE-S-STTHHHHHHHHHHCC CS
         ROK 264 kklevpvveivaaklgdkagllGaaaLake 293
                    ++p   + aa lgd+ag lGaa+La +
  KIR62782.1 311 -FHRRPR--LAAAALGDEAGCLGAALLALD 337
                 .444444..89****************976 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   2.3e-05      0.21       2      53 ..      14      69 ..      13      84 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.3e-05
  Hydant_A_N  2 igIDvGGTfTDavaldekeeevavlKllst....pdavaegirealeevleesipr 53
                ++ DvGGT   + +++++  +v++ + ++     pdav+e i+++ e ++++++++
  KIR62782.1 14 VALDVGGTGMKCALVRPDGSTVHTERHPTDagrgPDAVVETILDVAEGLAGKARAD 69
                789********************************************999997763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2551.74
//
Query:       KIR62783.1  [L=309]
Description: sugar isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-09   35.7   0.0     0.0013   18.6   0.0    2.4  2  SIS       SIS domain


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.1e-06     0.019       6     125 ..      34     147 ..      32     151 .. 0.83
   2 !   18.6   0.0   7.3e-08    0.0013       6      63 ..     178     237 ..     175     280 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-06
                 SEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEE CS
         SIS   6 kriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadlalyi 104
                 +r+ v+G+Gts ++a   a   e  g    ++ +ase+ +g     ++ d +i++++sg t ++++++  ++ +   + +I + ++sp++  a+ ++++
  KIR62783.1  34 ERVAVVGCGTSWFMATAYAGLREAAGHGETDAFQASEFPTG-----RRYDRLIAVTRSGTTTEVLELLAALRGQLP-TTVIVGDPASPAVDVASAVVAM 126
                 5899***********99999999999999999999998888.....******************999987766544.4678889*************** PP

                 EEECHCSSSHCHHHHHHHHHH CS
         SIS 105 naepetlvastksltaqlaal 125
                 + ++e  v  t+  t+ la+l
  KIR62783.1 127 PFADERSVVQTRFATTALALL 147
                 *99999555555555544444 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 7.3e-08
                 SEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEE..SS CS
         SIS   6 kriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilis..fs 63 
                 +++ +lG+G    +a+e+alk  e +++ +e+++a +++hg+++++ ++ lv ++   + 
  KIR62783.1 178 EQVTFLGRGWTIGLAQEAALKCREAATFWAEAYPAMDYRHGPISVAAPGRLVWAFGdiPE 237
                 57899**********************************************999884444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2401.18
//
Query:       KIR62784.1  [L=261]
Description: alkaline phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-46  158.0   0.2    2.6e-46  157.5   0.2    1.2  1  DeoRC           DeoR C terminal sensor domain
    1.3e-17   63.3   0.1    3.5e-17   61.9   0.1    1.7  1  HTH_DeoR        DeoR-like helix-turn-helix domain
    2.5e-05   24.1   0.1    4.7e-05   23.3   0.1    1.5  1  HTH_11          HTH domain
    4.5e-05   23.4   0.4    0.00035   20.6   0.1    2.2  2  HTH_20          Helix-turn-helix domain
    0.00023   20.8   0.0     0.0005   19.7   0.0    1.5  1  Rib_5-P_isom_A  Ribose 5-phosphate isomerase A (phosphoribois
    0.00074   19.3   0.3     0.0025   17.6   0.1    2.0  2  HTH_AsnC-type   AsnC-type helix-turn-helix domain
     0.0023   17.5   0.0      0.028   14.0   0.0    2.3  2  HTH_24          Winged helix-turn-helix DNA-binding
     0.0037   17.1   0.4      0.016   15.1   0.2    2.1  2  MarR_2          MarR family
     0.0038   17.0   1.1      0.028   14.2   0.1    2.5  2  HTH_23          Homeodomain-like domain
     0.0043   17.0   0.0     0.0087   16.0   0.0    1.5  1  MarR            MarR family
     0.0061   16.5   0.0      0.025   14.6   0.0    2.0  2  Put_DNA-bind_N  Putative DNA-binding protein N-terminus
     0.0091   16.3   0.0       0.03   14.7   0.0    1.8  1  Rrf2            Transcriptional regulator
  ------ inclusion threshold ------
       0.01   15.4   0.2      0.027   14.1   0.2    1.7  1  GntR            Bacterial regulatory proteins, gntR family
      0.033   14.2   0.0      0.061   13.4   0.0    1.3  1  HTH_Mga         M protein trans-acting positive regulator (MG
      0.056   13.8   0.9       0.45   10.9   0.1    2.5  2  HTH_31          Helix-turn-helix domain
      0.066   13.2   0.1       0.17   11.9   0.1    1.6  1  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.083   13.0   0.7       0.91    9.7   0.0    2.9  3  HTH_28          Helix-turn-helix domain
       0.14   11.9   0.0         17    5.2   0.0    2.8  3  DUF2922         Protein of unknown function (DUF2922)


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.5   0.2   2.7e-49   2.6e-46       2     160 .]      74     241 ..      73     241 .. 0.99

  Alignments for each domain:
  == domain 1  score: 157.5 bits;  conditional E-value: 2.7e-49
       DeoRC   2 naeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekk.........nltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqf 91 
                 +++eK+rI++aAa+l+ +g ++ l++GtT +e+araLa ++         +ltvvTn ln+a+eL  ++++kv+++GG+vr+ks  lvgpl    lr++
  KIR62784.1  74 HSAEKQRIGAAAAALVTPGTVVGLNGGTTSTEVARALAVRPdlntsaegaQLTVVTNALNIANELLVRSRMKVVVAGGVVRPKSFELVGPLGGALLREV 172
                 789************************************9999999***************************************************** PP

       DeoRC  92 nvdkaflgangidaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitDk 160
                 ++d+a+lg+++id++ g+  ++e ea++++ ++++a+rv+++aDssK+g +af+ri+++e++++l+tD+
  KIR62784.1 173 TLDVALLGVDAIDPQLGAAAHHEGEAAMNNLMVARAKRVVIIADSSKLGGHAFARICPVERVETLVTDS 241
                 ********************************************************************6 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.1   3.6e-20   3.5e-17       1      54 [.       6      59 ..       6      60 .. 0.96

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 3.6e-20
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsi 54
                R +++le+l + g +svee++ +l+vS+aTiRRD+++L++q ++tRt+GGav++
  KIR62784.1  6 RWNALLEMLTDNGRVSVEEAAGRLDVSQATIRRDFDQLAQQQMITRTRGGAVAN 59
                7789***********************************************976 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   4.7e-08   4.7e-05       1      40 [.       6      44 ..       6      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.7e-08
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLe 40
                R +++le+L   +g +s ee A +L+vS +t+rrd ++L 
  KIR62784.1  6 RWNALLEML-TDNGRVSVEEAAGRLDVSQATIRRDFDQLA 44
                7899*****.88888********************99994 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   3.5e-07   0.00035      15      60 ..      10      55 ..       9      56 .. 0.95
   2 ?    0.2   0.0      0.81     8e+02      22      37 ..      98     113 ..      95     121 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.5e-07
                HHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTE CS
      HTH_20 15 ilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvreg 60
                +l +L++++ ++++e a rld+s++t+++ +++L++   ++++r g
  KIR62784.1 10 LLEMLTDNGRVSVEEAAGRLDVSQATIRRDFDQLAQQQMITRTRGG 55
                7999**************************************9976 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.81
                 CTTB-HHHHHHHHTS- CS
      HTH_20  22 aegltaselaerldls 37 
                 ++g t +e+a++l ++
  KIR62784.1  98 NGGTTSTEVARALAVR 113
                 689999*****99544 PP

>> Rib_5-P_isom_A  Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     5e-07    0.0005      25      87 ..     171     232 ..     159     243 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5e-07
                     CCSSEEEEEE--SEEETTS-EE--TTS-HHHHHHHHHTEEEEEEEEEGGGBESSTTSS-EEEE CS
  Rib_5-P_isom_A  25 eveeidlaiDGaDevdedlnliKGgGgallrEKivaaaakkfiviadesKlveklgkfpvPve 87 
                     ev ++d+a+ G+D +d++l +     g      ++ a ak++++iad+sKl  +  +   Pve
      KIR62784.1 171 EV-TLDVALLGVDAIDPQLGAAAHHEGEAAMNNLMVARAKRVVIIADSSKLGGHAFARICPVE 232
                     45.79**************9998888888888888899************9877555667776 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   2.5e-06    0.0025       7      36 ..       9      38 ..       8      43 .. 0.95
   2 ?   -1.7   0.0       2.8   2.8e+03      18      29 ..     101     112 ..      98     115 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.5e-06
  HTH_AsnC-type  7 kILeaLqedaRisyaeLAervGlSestvlr 36
                   ++Le L  ++R s++e A r+ +S++t++r
     KIR62784.1  9 ALLEMLTDNGRVSVEEAAGRLDVSQATIRR 38
                   69**************************98 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.8
  HTH_AsnC-type  18 isyaeLAervGl 29 
                    ++ +e+A+++ +
     KIR62784.1 101 TTSTEVARALAV 112
                    567889998866 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.8e-05     0.028       8      36 ..      10      38 ..       9      50 .. 0.89
   2 ?    0.7   0.0       0.4     4e+02      15      27 ..      98     110 ..      94     112 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
      HTH_24  8 ILelLqknprisqreLAerlglSpstvnr 36
                +Le L +n+r s  e A rl++S++t++r
  KIR62784.1 10 LLEMLTDNGRVSVEEAAGRLDVSQATIRR 38
                79************************998 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.4
      HTH_24  15 nprisqreLAerl 27 
                 n++++ +e+A++l
  KIR62784.1  98 NGGTTSTEVARAL 110
                 99********987 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   1.6e-05     0.016       7      56 ..       6      54 ..       4      58 .. 0.84
   2 ?   -1.2   0.0         2     2e+03      15      35 ..      96     114 ..      93     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.6e-05
                HHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2  7 qarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpg 56
                 + +L++     gr ++v e a rl++s++++ r  + L ++ +++r++g
  KIR62784.1  6 RWNALLEMLTDNGR-VSVEEAAGRLDVSQATIRRDFDQLAQQQMITRTRG 54
                56666665555554.9******************************9987 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2
                 HCTTTSEEEHHHHHHHHTSSH CS
      MarR_2  15 grrpgrdltvgelarrlglsk 35 
                 g ++g   t +e+ar+l + +
  KIR62784.1  96 GLNGG--TTSTEVARALAVRP 114
                 56677..79999999998865 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   2.8e-05     0.028       7      36 ..       6      38 ..       2      38 .. 0.87
   2 ?    0.5   0.0      0.56   5.6e+02       6      34 ..      67      94 ..      63      95 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.8e-05
      HTH_23  7 Rlrillllae...GlsvreIAreLgvsrrTvyr 36
                R+ +ll  +    + sv+e+A +L+vs+ T++r
  KIR62784.1  6 RWNALLEMLTdngRVSVEEAAGRLDVSQATIRR 38
                7787777776689******************98 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.56
      HTH_23  6 eRlrillllaeGlsvreIAreLgvsrrTv 34
                 R++ +++ ae++++ ++A++L v++ Tv
  KIR62784.1 67 LRYKTAKHSAEKQRIGAAAAAL-VTPGTV 94
                58999999999********999.777776 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   8.7e-06    0.0087       8      51 ..      10      53 ..       8      54 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.7e-06
                HHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR  8 iLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRsk 51
                +L++l ++g  sv e a +l vs++t+ r  d+L ++ +i+R++
  KIR62784.1 10 LLEMLTDNGRVSVEEAAGRLDVSQATIRRDFDQLAQQQMITRTR 53
                7999**************************************97 PP

>> Put_DNA-bind_N  Putative DNA-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.5e-05     0.025       9      48 ..       3      40 ..       1      41 [. 0.91
   2 ?   -1.4   0.0       2.6   2.5e+03      29      41 ..     102     114 ..     100     116 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.5e-05
                    HHHHHHHHHHHHHHTT--EE-HHHHHHHCTS-HHHHHHHH CS
  Put_DNA-bind_N  9 RLplYlryLeelkeegveriSSteLaealgvtaaqvRKDL 48
                    R ++   +Le l ++g  r+S +e a +l+v+ a++R+D+
      KIR62784.1  3 RYARWNALLEMLTDNG--RVSVEEAAGRLDVSQATIRRDF 40
                    7778888999999999..*********************9 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.6
                     -HHHHHHHCTS-H CS
  Put_DNA-bind_N  29 SSteLaealgvta 41 
                      Ste a+al v +
      KIR62784.1 102 TSTEVARALAVRP 114
                     6999999998876 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     3e-05      0.03      17      60 ..      11      54 ..       4      58 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3e-05
                HHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
        Rrf2 17 LakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrG 60
                L++  +++ vs+ee a r ++s+  +++ + +L+++ +++ +rG
  KIR62784.1 11 LEMLTDNGRVSVEEAAGRLDVSQATIRRDFDQLAQQQMITRTRG 54
                566667777********************************999 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   2.7e-05     0.027      23      62 ..      19      57 ..      11      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.7e-05
                B---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEE CS
        GntR 23 kLPsereLaaefgVsrttvReALrrLeaeglverrqgrGt 62
                +  s++e a +++Vs  t+R+  ++L+++++++r +g+++
  KIR62784.1 19 RV-SVEEAAGRLDVSQATIRRDFDQLAQQQMITRTRGGAV 57
                56.889999**************************99875 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.1e-05     0.061      10      44 ..      10      43 ..       8      45 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.1e-05
     HTH_Mga 10 LlelLteneksltldelakeLglseltlqsdiseL 44
                Lle Lt+ +++ ++ e+a +L+ s  t++ d ++L
  KIR62784.1 10 LLEMLTD-NGRVSVEEAAGRLDVSQATIRRDFDQL 43
                9******.*********************998887 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00045      0.45      14      33 ..      19      38 ..       5      47 .. 0.88
   2 ?    0.5   0.1      0.78   7.8e+02      14      34 ..     100     120 ..      68     135 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00045
      HTH_31 14 GLsqeevAerlgvsestlsr 33
                ++s ee+A+rl vs++t++r
  KIR62784.1 19 RVSVEEAAGRLDVSQATIRR 38
                689***************99 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.78
      HTH_31  14 GLsqeevAerlgvsestlsrl 34 
                 G + +evA++l v ++  +  
  KIR62784.1 100 GTTSTEVARALAVRPDLNTSA 120
                 455667777776666655555 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00017      0.17      21      55 ..      19      53 ..       5      59 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEETE CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglisrgr 55
                +++ ee A +l +++ t+ r + +L ++++i+r r
  KIR62784.1 19 RVSVEEAAGRLDVSQATIRRDFDQLAQQQMITRTR 53
                6899****************************532 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00091      0.91       5      31 ..       9      38 ..       6      47 .. 0.85
   2 ?   -0.4   0.1       1.3   1.3e+03       2      22 ..      68      88 ..      67      94 .. 0.81
   3 ?   -1.4   0.0       2.8   2.8e+03      11      24 ..      98     112 ..      97     115 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00091
      HTH_28  5 iiklla..aGh.svreaArelgisrrtvyr 31
                ++++++  +G+ sv eaA +l +s+ t++r
  KIR62784.1  9 ALLEMLtdNGRvSVEEAAGRLDVSQATIRR 38
                566666657989****************86 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.3
      HTH_28  2 RleiikllaaGhsvreaArel 22
                R++  k+ a+  ++ +aA++l
  KIR62784.1 68 RYKTAKHSAEKQRIGAAAAAL 88
                888888989888888888865 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.8
      HTH_28  11 aGh.svreaArelgi 24 
                 +G+ + +e+Ar+l +
  KIR62784.1  98 NGGtTSTEVARALAV 112
                 5555999****9987 PP

>> DUF2922  Protein of unknown function (DUF2922)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.056        55      24      52 ..      29      58 ..      15      65 .. 0.80
   2 ?   -2.4   0.0         4     4e+03      23      45 ..      73      95 ..      66     109 .. 0.61
   3 ?    5.2   0.0     0.017        17      27      56 ..     136     165 ..     118     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.056
     DUF2922 24 edlteaeVkaaMdlIiakniFt.tkggdlv 52
                 d+ +a+++   d++ +++++t t gg+++
  KIR62784.1 29 LDVSQATIRRDFDQLAQQQMITrTRGGAVA 58
                5899******************66666765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4
     DUF2922 23 kedlteaeVkaaMdlIiakniFt 45
                k    ++ + aa+ ++++ + ++
  KIR62784.1 73 KHSAEKQRIGAAAAALVTPGTVV 95
                55556677777777777655554 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.017
     DUF2922  27 teaeVkaaMdlIiakniFttkggdlvekks 56 
                 +e  V++ M+ ++a +++ +k+ +lv++ +
  KIR62784.1 136 NELLVRSRMKVVVAGGVVRPKSFELVGPLG 165
                 5566999*******************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2071.41
//
Query:       KIR62785.1  [L=336]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-28   98.8   0.0      5e-28   98.3   0.0    1.2  1  ABC_tran       ABC transporter
    1.9e-12   47.6   0.3    1.7e-06   28.1   0.0    2.1  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    0.00087   19.1   0.1    0.00087   19.1   0.1    2.5  2  AAA_30         AAA domain
     0.0033   17.7   0.1      0.018   15.3   0.1    2.0  1  AAA_22         AAA domain
  ------ inclusion threshold ------
      0.019   13.9   0.1      0.027   13.4   0.1    1.1  1  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
      0.027   14.2   0.0       0.05   13.4   0.0    1.4  1  AAA_29         P-loop containing region of AAA domain
      0.028   14.8   0.0      0.048   14.0   0.0    1.5  1  AAA_16         AAA ATPase domain
      0.039   13.5   0.1      0.083   12.5   0.1    1.5  1  cobW           CobW/HypB/UreG, nucleotide-binding domain
       0.12   12.9   0.0       0.17   12.3   0.0    1.2  1  AAA_23         AAA domain
       0.12   11.4   0.0       0.23   10.5   0.0    1.4  1  T2SSE          Type II/IV secretion system protein
       0.12   12.0   0.0       0.17   11.5   0.0    1.3  1  SRP54          SRP54-type protein, GTPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.0   3.1e-31     5e-28       1     137 []      25     165 ..      25     165 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 3.1e-31
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.........esdeeiekals 90 
                 l+  ++ +++g++++++G+nG+GK+t l++l+gl +p+ G++ + g+++    l+ +  ++g + + pq+fp+ t+r++           + +++++l+
  KIR62785.1  25 LDGFDMRVEQGQVHGFLGPNGSGKTTTLRTLLGLIRPNGGRMAILGQEVPA-ALPAVVGQVGAIVESPQFFPHFTARDTlsllagageVPQTRVDEVLE 122
                 678899********************************************9.9********************************99888999****** PP

                 HSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  91 klglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  +gl + + ++v    +++S G+kqr+a+a allk+pkll+lDEp +
  KIR62785.1 123 LVGLRDRAGERV----KTYSLGMKQRLAVASALLKNPKLLILDEPAN 165
                 ******999999....*****************************86 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.4e-06    0.0022       3      24 ..      39      60 ..      37      75 .. 0.85
   2 !   28.1   0.0   1.1e-09   1.7e-06     237     297 ..     137     194 ..      90     199 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.4e-06
      AAA_21  3 vliGpNgsGKSnLLdaldllar 24
                ++ GpNgsGK++ L++l +l r
  KIR62785.1 39 GFLGPNGSGKTTTLRTLLGLIR 60
                789**************99954 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 1.1e-09
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  S G+k+ la+++all  +   +ll++DEp ngL+P  +r+  +l ++l++ g  v+l++H
  KIR62785.1 137 YSLGMKQRLAVASALLKNP---KLLILDEPANGLDPGGIREMRTLTRDLAASGMTVLLSSH 194
                 49******9*******999...9************************************** PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   5.3e-07   0.00087      17     121 ..      34     191 ..      28     194 .. 0.74
   2 ?   -1.0   1.0      0.73   1.2e+03      57     133 ..     244     332 ..     217     334 .. 0.48

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5.3e-07
      AAA_30  17 gdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkv.Laeelgi...........eastiakllkrlk...................... 81 
                 + +v+   Gp G+GKtt+l++l  +++ +ggr+++l  +  aA   +  ++g+           +a+ + +ll   +                      
  KIR62785.1  34 QGQVHGFLGPNGSGKTTTLRTLLGLIRPNGGRMAILGQEVPAALPaVVGQVGAivespqffphfTARDTLSLLAGAGevpqtrvdevlelvglrdrage 132
                 45688999**********************999999998888854333344422222223333344444444433336777777777777779999999 PP

      AAA_30  82 ...............grarlepgtllivDEagmv....dtkqlaallkaaekagakvil 121
                                + a l++ +lli DE +      +++++++l++ ++++g++v+l
  KIR62785.1 133 rvktyslgmkqrlavASALLKNPKLLILDEPANGldpgGIREMRTLTRDLAASGMTVLL 191
                 999999999999998556677779******88777888999999999999999999987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.73
      AAA_30  57 kaAkvLae.elgieastiakllkrlk...grarlepgtllivDEagmvdtkqlaallkaaeka........gakvilvGDerQlasVea 133
                 +aA++L++ ++ ++a+  + +l   +   +  r+ +g+ l v E + v  +    +l+  ++a          +   vGD  Q ++V+ 
  KIR62785.1 244 AAADALSRaGVAVTAHPDHLMLAGVEkpaQVSRILAGQGLYVSELAPVTVDLESVFLELTSTApvpgqhrqVDQSTKVGDAGQPGAVGG 332
                 55555553133345555555554444555444455555555555555544333333333332222222221234455777777777765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.1e-05     0.018      12     117 ..      42     184 ..      33     198 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
      AAA_22  12 GesGtGKTtllrrlleqldeeakaee..................................erpevvfvtlpsstsskdllrellralglelkaerlsse 76 
                 G+ G+GKTt+lr+ll     +++                                       +++++  + +++ +++   e+l+ +gl+  a + + +
  KIR62785.1  42 GPNGSGKTTTLRTLLGLI--RPN--GgrmailgqevpaalpavvgqvgaivespqffphfTARDTLSLLAGAGEVPQTRVDEVLELVGLRDRA-GERVK 135
                 9**************996..333..2458899******9999999999998888887777666777777777778888889999999988888.88888 PP

      AAA_22  77 ell.ealeqalrarav...ielliiDEaqh.lr..seealeeL.rslln 117
                  +   + ++ + a a    ++lli+DE  + l+    + +++L r+l+ 
  KIR62785.1 136 TYSlGMKQRLAVASALlknPKLLILDEPANgLDpgGIREMRTLtRDLAA 184
                 8876777777777777999********9999954324444444344443 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.6e-05     0.027      11      49 ..      32      69 ..      22      73 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.6e-05
  TrwB_AAD_bind 11 keretqhilivGttGsGKtqalekllrairargdraivl 49
                   +e+ + h  ++G  GsGKt++l+ ll  ir  g r+ +l
     KIR62785.1 32 VEQGQVH-GFLGPNGSGKTTTLRTLLGLIRPNGGRMAIL 69
                   4444444.467***********************99886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     3e-05      0.05      12      48 ..      25      61 ..      22      67 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3e-05
      AAA_29 12 fdghtieidlkgatlltGpsGsGKSTllDAiqalLvp 48
                +dg ++++++ +++ + Gp+GsGK+T l  +  l+ p
  KIR62785.1 25 LDGFDMRVEQGQVHGFLGPNGSGKTTTLRTLLGLIRP 61
                667778888555999***********98766666666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     3e-05     0.048      29      69 ..      40      79 ..      16     190 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3e-05
      AAA_16 29 lsGesGvGKsslvrellralekdggif.lrgkcdqlesaipy 69
                + G+ G+GK++ +r+ll  ++ +gg   + g+ +    a+p 
  KIR62785.1 40 FLGPNGSGKTTTLRTLLGLIRPNGGRMaILGQEVPA--ALPA 79
                57***************9999997555577777766..4443 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   5.1e-05     0.083       3      35 ..      38      72 ..      36      76 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.1e-05
                EEEEESTTCCHHHHHHHHH..CT--SS-EEEEESS CS
        cobW  3 tvltGflGsGKTtLlnhll..enraglklavivNe 35
                 ++ G+ GsGKTt l++ll   + +g ++a++  e
  KIR62785.1 38 HGFLGPNGSGKTTTLRTLLglIRPNGGRMAILGQE 72
                5677999************9988899999998666 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011      0.17      23      37 ..      39      53 ..      19      57 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
      AAA_23 23 lItGpNGaGKTTild 37
                 + GpNG+GKTT l+
  KIR62785.1 39 GFLGPNGSGKTTTLR 53
                689*********987 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00014      0.23     136     160 ..      42      66 ..      33      77 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
       T2SSE 136 GgTgsGKttllyallkeinksderi 160
                 G+ gsGKtt+l +ll  i  +  r+
  KIR62785.1  42 GPNGSGKTTTLRTLLGLIRPNGGRM 66 
                 9***************998876665 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0001      0.17       6      34 ..      40      68 ..      36     161 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
                EEESTTSSHHHHHHHHHHHHHHTTS-EEE CS
       SRP54  6 lvGlqGaGKTttlaKLaallkkegkkvll 34
                ++G++G+GKTttl  L  l++ +g ++++
  KIR62785.1 40 FLGPNGSGKTTTLRTLLGLIRPNGGRMAI 68
                89***********9999888888766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2292.32
//
Query:       KIR62786.1  [L=340]
Description: hypothetical protein TK50_17685 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-12   46.0   3.2    5.1e-12   45.7   3.2    1.2  1  ABC2_membrane_2  ABC-2 family transporter protein
     0.0018   18.3  10.1     0.0027   17.7   6.9    2.5  3  ABC2_membrane_4  ABC-2 family transporter protein
  ------ inclusion threshold ------
       0.98   10.4   0.1       0.98   10.4   0.1    2.2  3  DUF4834          Domain of unknown function (DUF4834)
        2.2    7.8   6.7       0.45   10.0   2.3    2.1  2  DUF1700          Protein of unknown function (DUF1700)
        8.1    6.5   6.4        3.4    7.7   0.1    2.9  3  Herpes_UL73      UL73 viral envelope glycoprotein


Domain annotation for each model (and alignments):
>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   3.2   1.4e-15   5.1e-12      12     288 .]      17     339 ..       1     339 [. 0.72

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 1.4e-15
  ABC2_membrane_2  12 vrsrrfllltvllplidvalaylkdlgsslqseakaikeatlaleyveaasasdeaedtdqdlkv............................. 76 
                       r  ++l+l vl +++ v + ++++  + +q+ a++ ++ +  +e v+ a ++  a ++ +++ +                             
       KIR62786.1  17 ARWATVLGLLVLGAVL-VGVFFTNQKIGPEQQAAAQRQAEQQYQEQVRWAEQERKACEQAKASGQdqqqegrfppdcemitppppesiearwfl 109
                      4444566777777777.9999999999999999999999999999999888865555554444449999************************* PP

  ABC2_membrane_2  77 ............vstimavlipviaalfgadaiagEkergTlkllLskPvsRdeillgKfigglaiglaiavallatvll.......alaiila 151
                                  +   ++ ++++++ ++ga  +  E+ +g +  lL     R ++ll K+ + l+  l+ + +++at+ +       +l  +  
       KIR62786.1 110 pstfdfrasfeeMIVTFTAILALLGFVIGASFVGAEWSSGGMMNLLLWRPQRLTVLLTKLAALLTG-LVAVTLATATLWTagfwvvgTLRGTTE 202
                      *********98866666778999*****************99888887779********9877765.333333333333344455556666666 PP

  ABC2_membrane_2 152 lgivlaledllllvvasvlllllvvflalglllSsvarssreaaalalglfvv....lailvpivlygvaellagpavpqeindflsllsptsa 241
                        ++  ++++ l+ +  ++l++  v++++g++l+s+ r ++ a+  a+g +vv    l i+++++++++ e+ + p++                
       KIR62786.1 203 KMTSGVWQSFALTGLRGLVLIV--VAATIGFALASLGRHTAMALGGAIGAVVVgqfgLGIVMSMAGARFVEAWLLPTYG--------------- 279
                      6677777788888877776666..89************************99933333444555555555555555555............... PP

  ABC2_membrane_2 242 yntllneilagsdlna................lgstatnllilllllavllvlgyvlFkrkDl 288
                         +++ ++  +  ++                l++  +++l++++ l+v+l+ ++v+ +r+D+
       KIR62786.1 280 LAWMTKKVTLED--WNacnatyygeckpatfdLTWQHASILFSVA-LVVVLGAALVSMRRRDV 339
                      444444444433..2233444444444444448888888888887.56778999999999986 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.16   5.9e+02      10      43 ..      13      46 ..       3      61 .. 0.63
   2 !   17.7   6.9   7.4e-07    0.0027      49     169 ..     119     244 ..     103     257 .. 0.73
   3 ?   -2.2   0.0      0.93   3.3e+03      18      27 ..     318     327 ..     301     336 .. 0.50

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.16
  ABC2_membrane_4 10 krskivwllvlaallvpllallyfnllgktgldp 43
                     kr+   w++vl++l++  +++ +f + +k g ++
       KIR62786.1 13 KRRFARWATVLGLLVLGAVLVGVFFTNQKIGPEQ 46
                     5666678999988888776666665555544433 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 7.4e-07
  ABC2_membrane_4  49 lsvfgftlllllplilgiiasylifrEeqndtlknLltiPvsrtklllaKlivllllsvllmlvtflitvlfallsgfvgfsvkl....vlell 138
                      ++ + +t++ +l l+  +i++  +  E +++++ nLl+   +r ++ll Kl++ll   v+++l+t+++  +  +++g  + ++++    v++++
       KIR62786.1 119 FEEMIVTFTAILALLGFVIGASFVGAEWSSGGMMNLLLWRPQRLTVLLTKLAALLTGLVAVTLATATLWTAGFWVVGTLRGTTEKmtsgVWQSF 212
                      45666777788888888899***************9987779999**********999999999998888877888877776665111155555 PP

  ABC2_membrane_4 139 kkclelgllvffavlpi.ialvllkksyvlpl 169
                        + + gl+++++ + i +al++l ++ +++l
       KIR62786.1 213 ALTGLRGLVLIVVAATIgFALASLGRHTAMAL 244
                      54445555555555555567788877777766 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.93
  ABC2_membrane_4  18 lvlaallvpl 27 
                      l+++al+v+l
       KIR62786.1 318 LFSVALVVVL 327
                      2222222222 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00027      0.98      15      77 ..      21      83 ..      17      89 .. 0.52
   2 ?   -3.7   1.1         5   1.8e+04       4      22 ..     124     142 ..     122     144 .. 0.59
   3 ?   -2.9   0.1         4   1.4e+04       7      23 ..     317     333 ..     315     337 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
     DUF4834 15 lviglsilsvilrtvfglgsrkkssksaqkqfgnstnsnqqksqsrsetkeegeiieeersek 77
                 v+gl +l+++l  vf + ++   +++a++q++ +++ ++q + +++e+k+ ++++ + ++++
  KIR62786.1 21 TVLGLLVLGAVLVGVFFTNQKIGPEQQAAAQRQAEQQYQEQVRWAEQERKACEQAKASGQDQQ 83
                578888888888777776666555544444433333333333334444444444444444444 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5
     DUF4834   4 Llfilifiiailviglsil 22 
                 + f  i+ ++ +vig+s++
  KIR62786.1 124 VTFTAILALLGFVIGASFV 142
                 4455666666677776665 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4
     DUF4834   7 ilifiiailviglsils 23 
                 il+ + +++v+g++++s
  KIR62786.1 317 ILFSVALVVVLGAALVS 333
                 77888888888877765 PP

>> DUF1700  Protein of unknown function (DUF1700)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.3   0.00013      0.45      93     161 ..     162     230 ..     150     238 .. 0.80
   2 ?   -2.6   0.1      0.93   3.3e+03     143     158 ..     252     267 ..     250     274 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00013
     DUF1700  93 lilvlipliviislvlsllvvalallvsplvllvksllkgfeelslnvfvsigllgl.Gllllivayylv 161
                 l ++l+ l ++++ ++++ +++ +l ++++ ++  +l ++ e++++ v+ s++l+gl Gl+l++va +++
  KIR62786.1 162 LTVLLTKLAALLTGLVAVTLATATLWTAGFWVV-GTLRGTTEKMTSGVWQSFALTGLrGLVLIVVAATIG 230
                 556677777777778888888888888888765.5677888889989*********99******998776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.93
     DUF1700 143 sigllglGllllivay 158
                 ++g +glG++++++  
  KIR62786.1 252 VVGQFGLGIVMSMAGA 267
                 678899***9998755 PP

>> Herpes_UL73  UL73 viral envelope glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3       1.2   4.4e+03      45      61 ..      19      35 ..      15      38 .. 0.62
   2 ?    0.8   0.1      0.14     5e+02      34      52 ..     119     137 ..     117     145 .. 0.76
   3 ?    7.7   0.1   0.00095       3.4      20      62 ..     294     335 ..     283     336 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
  Herpes_UL73 45 wallnvlvvivalliyl 61
                 wa +  l+v+ a+l+ +
   KIR62786.1 19 WATVLGLLVLGAVLVGV 35
                 55555566778887765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.14
  Herpes_UL73  34 yslslsSFssiwallnvlv 52 
                  ++  + +F +i+all+ ++
   KIR62786.1 119 FEEMIVTFTAILALLGFVI 137
                  556678999****999875 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.00095
  Herpes_UL73  20 atndFYsvsCsadtyslslsSFssiwallnvlvvivalliylr 62 
                  a n  Y  +C+  t+ l  +  +si++ + ++vv+ a l+ +r
   KIR62786.1 294 ACNATYYGECKPATFDLTWQ-HASILFSVALVVVLGAALVSMR 335
                  56667888999999999987.69***************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1508  (0.0841095); expected 358.6 (0.02)
Passed bias filter:                      726  (0.0404931); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 2168.50
//
Query:       KIR62787.1  [L=149]
Description: hypothetical protein TK50_17690 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-36  121.9   1.6    9.7e-36  121.5   1.6    1.2  1  DUF3263   Protein of unknown function (DUF3263)


Domain annotation for each model (and alignments):
>> DUF3263  Protein of unknown function (DUF3263)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.5   1.6   5.4e-40   9.7e-36       2      73 ..      76     147 ..      75     148 .. 0.98

  Alignments for each domain:
  == domain 1  score: 121.5 bits;  conditional E-value: 5.4e-40
     DUF3263   2 LserdraiLaferqwwrhagakeeaireelglsptrYyqlLnaLiddpeAlaadPvlvkRLrrlRaarrraR 73 
                 L+er+ +iLafe+qwwrhagake+ ir+++gls+trYyqlLn L+d+p+Alaa+Pvlv RLrrlR++r+r+R
  KIR62787.1  76 LTERELRILAFEQQWWRHAGAKEQSIRDTFGLSATRYYQLLNGLLDNPAALAAEPVLVGRLRRLRSSRARNR 147
                 9**********************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1001.39
//
Query:       KIR62788.1  [L=71]
Description: hypothetical protein TK50_17695 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 488.37
//
Query:       KIR62789.1  [L=331]
Description: hypothetical protein TK50_17700 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2189.46
//
Query:       KIR62790.1  [L=169]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-14   52.6   0.0    8.5e-14   52.4   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    1.1e-12   48.2   0.0    1.3e-12   48.0   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    6.3e-05   22.7   0.1    9.5e-05   22.1   0.1    1.4  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
    9.1e-05   22.1   1.2    0.00012   21.8   1.2    1.3  1  HTH_42           Winged helix DNA-binding domain
  ------ inclusion threshold ------
      0.013   15.4   0.0      0.017   15.0   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
      0.021   15.3   0.0      0.036   14.5   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
      0.067   13.3   0.8        0.1   12.8   0.8    1.3  1  Acetyltransf_6   Acetyltransferase (GNAT) domain
      0.076   13.2   0.0      0.097   12.8   0.0    1.2  1  Acetyltransf_4   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   3.8e-17   8.5e-14       3     138 .]       6     148 ..       4     148 .. 0.73

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 3.8e-17
  Acetyltransf_3   3 lLrplteeDlealfel...rsdpe.vmry....lpe.pltleeaeewlerawa.eeseeegygwaivlkdtgviGsvglrdleeedeeaelgyml 87 
                      L p+ e+ le+l+++    ++p+ vm       ++ ++ +e+ ++++++ +a  + + +   +a+ + ++ v+G+++++++ e   ++e g++l
      KIR62790.1   6 RLEPVDERNLEPLLSVavaEAEPDdVMPPvdapAGWsHARREAFRDYYRTGMAgLDGPTHTAMYAVLVGGE-VLGMIRMTRRAEPG-TVETGIWL 98 
                     67788888888886532225577778842232333456666666777775444122333334588855555.8****999777765.5******* PP

  Acetyltransf_3  88 apsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     ++s++g+G++  a+r ll++a +  g++++va++  +N++ + vl+++G +
      KIR62790.1  99 GRSARGQGVGAAALRELLDLA-AAAGMHTVVAETTRDNSGAVSVLRRCGAK 148
                     *********************.7777***********************75 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   5.9e-16   1.3e-12      14     116 ..      39     146 ..      23     147 .. 0.84

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 5.9e-16
                     HHHHHHHHHHHHHH.......HHSTTC.EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEE CS
  Acetyltransf_1  14 ppnedaseeefees.......fsleae.gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivla 100
                       +++a  e+f+++       +  ++    ++++ +ge++G+i+++ + +   + ++  +++  +++rg+G+G a l++l++ a   g + +v++
      KIR62790.1  39 AGWSHARREAFRDYyrtgmagLDGPTHtAMYAVLVGGEVLGMIRMTRRAE---PGTVETGIWLGRSARGQGVGAAALRELLDLAAAAGMHTVVAE 130
                     557777777777775555543222333466669999**************...788888********************************9*** PP

                     EETTEHHHHHHHHHTT CS
  Acetyltransf_1 101 veedndaairlYeklG 116
                     ++ dn +a+ +++++G
      KIR62790.1 131 TTRDNSGAVSVLRRCG 146
                     ************88*9 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   4.2e-08   9.5e-05      72     139 ..      84     149 ..      37     155 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.2e-08
                     CS---TT-EEEEEEESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EE CS
  Acetyltransf_8  72 yydaepgdrGiHlligeaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfek 139
                      ++aepg++   +++g  +arg+g+++a lr+l++++ a  ++  vv+E   +N  a+++l+++G + 
      KIR62790.1  84 TRRAEPGTVETGIWLG-RSARGQGVGAAALRELLDLAAAA-GMHTVVAETTRDNSGAVSVLRRCGAKL 149
                     45899***********.5778**************99988.9***********************876 PP

>> HTH_42  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   1.2   5.2e-08   0.00012     234     320 ..      23     114 ..       3     135 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 5.2e-08
      HTH_42 234 lpgadtpvrlLppfD.nlllgrarrerlfddfdyrkevytpaakrr..vlpvLvdGrvvGrwdlkadretgvleveaflllea......eraalea 320
                 +++a +p +++pp D +  +++arre +  d  yr  +    +     +++vLv+G+v G ++++++ e g++e   + l++        +aal++
  KIR62790.1  23 VAEA-EPDDVMPPVDaPAGWSHARREAFR-DY-YRTGMAGLDGPTHtaMYAVLVGGEVLGMIRMTRRAEPGTVETGIW-LGRSargqgvGAAALRE 114
                 3333.56699*****8899********99.99.****99988888888************************999873.33334467764444444 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   7.8e-06     0.017      30     105 ..      65     146 ..      41     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.8e-06
  Acetyltransf_10  30 ealllvaeeggkivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklG 105
                      ++ ++++ +gg+++G+i++ r+ +     + +   +++rgqG+g+a l ++++ a  +g ++   +   ++  av++ +++G
       KIR62790.1  65 HTAMYAVLVGGEVLGMIRMtRRAEpgtVETGIWLGRSARGQGVGAAALRELLDLAAAAGMHTvVAETTRDNsGAVSVLRRCG 146
                      567899999**********5555599777889**********************9999988774444444447777777766 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.6e-05     0.036       5      54 ..      68     125 ..      63     146 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.6e-05
                     EEEEEETTEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH....TT.SEEE CS
  Acetyltransf_7   5 vfVaeddgkivGfialslld...aeitrlaVdpeyrgkGiGraLlea....ae.kgii 54 
                     ++ +  +g+++G+i++++++   + +t+++   ++rg+G+G a l+     a+  g++
      KIR62790.1  68 MYAVLVGGEVLGMIRMTRRAepgTVETGIWLGRSARGQGVGAAALRElldlAAaAGMH 125
                     67677889**********9998777777*************99998534441145543 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.8   4.5e-05       0.1      48     131 ..      43     127 ..       5     131 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.5e-05
  Acetyltransf_6  48 vfadpltraflrdllaalaargalrlyvlrldgrpvAvalglrsgdrlyywlggy.dpelaklspgllllweliedaaeeGlrrf 131
                     +++++++r+++r  +a l+ +    +y++ ++g++++++ + r  +      g +  +++++ ++g   l+el++ aa+ G++++
      KIR62790.1  43 HARREAFRDYYRTGMAGLDGPTHTAMYAVLVGGEVLGMIRMTRRAEPGTVETGIWlGRSARGQGVGAAALRELLDLAAAAGMHTV 127
                     44568899**********99**************************999999999556679********************9875 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.3e-05     0.097      52     136 ..      69     149 ..      47     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.3e-05
  Acetyltransf_4  52 flvaesdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFel 136
                     + v+  +++ G+ ++     ra+ + +e+ ++l  r ++ +g+g + +  l + +++ ++++ +ae+  +n+ ++ ++ + G +l
      KIR62790.1  69 YAVLVGGEVLGMIRMT---RRAEPGTVETGIWLG-RSARGQGVGAAALRELLDLAAAAGMHTVVAETTRDNSGAVSVLRRCGAKL 149
                     5555555666655555...5699**********7.89*****************************************9999665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1218.48
//
Query:       KIR62791.1  [L=765]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-56  188.3   0.0    9.6e-41  139.3   0.0    2.3  2  AAA              ATPase family associated with various cellul
    2.2e-19   68.9  18.5    1.5e-10   40.7   0.5    3.5  3  AAA_lid_3        AAA+ lid domain
    7.8e-14   52.4   5.3    5.8e-06   26.8   0.4    3.8  3  AAA_16           AAA ATPase domain
    2.8e-08   33.8   0.2     0.0016   18.4   0.1    3.1  2  AAA_5            AAA domain (dynein-related subfamily)
    1.8e-07   31.2   0.0    7.6e-07   29.2   0.0    2.1  1  CDC48_N          Cell division protein 48 (CDC48), N-terminal
    1.9e-07   31.2   0.2       0.37   10.7   0.0    4.3  4  NACHT            NACHT domain
    2.5e-06   28.1   0.0      0.023   15.3   0.0    2.3  2  AAA_18           AAA domain
      3e-06   27.1   0.0      0.016   14.9   0.0    2.6  2  IstB_IS21        IstB-like ATP binding protein
    4.6e-06   26.3   9.9      0.002   17.7   0.6    3.1  2  AAA_25           AAA domain
    6.9e-06   26.4   0.0       0.12   12.7   0.0    2.6  2  AAA_28           AAA domain
      8e-06   26.1   0.1       0.24   11.5   0.1    3.2  2  AAA_33           AAA domain
    1.2e-05   25.6   0.3       0.75   10.1   0.3    3.5  2  AAA_22           AAA domain
    1.8e-05   24.5   0.1       0.11   12.2   0.0    2.8  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    4.1e-05   23.4   0.0      0.027   14.2   0.0    2.5  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    0.00013   21.8   2.5      0.062   13.0   1.4    3.1  2  AAA_30           AAA domain
    0.00018   21.2   0.1      0.068   12.9   0.1    2.5  2  AAA_29           P-loop containing region of AAA domain
    0.00021   21.7   0.0       0.23   11.8   0.0    2.3  2  RNA_helicase     RNA helicase
    0.00029   20.1   0.1       0.58    9.3   0.1    2.2  2  TIP49            TIP49 P-loop domain
    0.00032   21.0   0.3       0.74   10.1   0.1    2.6  2  AAA_19           AAA domain
    0.00042   20.9   0.2        0.4   11.2   0.0    2.4  2  ABC_tran         ABC transporter
    0.00045   20.3   0.0     0.0052   16.8   0.0    2.1  2  AAA_14           AAA domain
    0.00069   18.9   0.6       0.78    9.0   0.0    2.3  2  Zeta_toxin       Zeta toxin
    0.00069   18.8   0.2       0.51    9.4   0.2    2.3  2  DUF815           Protein of unknown function (DUF815)
    0.00073   19.5   0.0       0.83    9.7   0.0    2.3  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00078   19.4   0.1        1.7    8.5   0.0    2.3  2  ATPase_2         ATPase domain predominantly from Archaea
     0.0024   17.8   0.0        1.2    9.0   0.0    2.3  2  Rad17            Rad17 P-loop domain
     0.0047   16.5   0.1          2    7.9   0.0    2.3  2  AAA_7            P-loop containing dynein motor region
     0.0053   16.9   0.0       0.74    9.9   0.0    2.4  2  Sigma54_activ_2  Sigma-54 interaction domain
     0.0056   16.1   1.0       0.63    9.4   0.1    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0082   15.9   0.0       0.31   10.7   0.0    2.2  2  AAA_24           AAA domain
  ------ inclusion threshold ------
      0.012   15.1   2.7        4.2    6.8   0.0    3.2  3  PhoH             PhoH-like protein
      0.013   15.4   0.0        3.2    7.6   0.0    2.8  2  NTPase_1         NTPase
      0.014   15.1   0.0        2.4    7.8   0.0    3.0  3  Sigma54_activat  Sigma-54 interaction domain
      0.017   14.6   1.4         13    5.2   0.1    3.5  3  Glyco_transf_21  Glycosyl transferase family 21
      0.024   14.7   0.0       0.31   11.1   0.0    2.2  2  AAA_2            AAA domain (Cdc48 subfamily)
      0.028   14.2   0.3       0.59    9.9   0.0    2.2  2  ATP_bind_1       Conserved hypothetical ATP binding protein
      0.033   13.0   0.9        5.9    5.6   0.1    2.3  2  Adeno_IVa2       Adenovirus IVa2 protein
       0.05   13.7   0.4        9.5    6.3   0.1    2.7  2  MMR_HSR1         50S ribosome-binding GTPase
      0.051   13.6   0.0        1.5    8.9   0.0    2.4  2  Vps4_C           Vps4 C terminal oligomerisation domain
      0.068   12.0   0.3        0.3    9.9   0.0    2.1  2  AFG1_ATPase      AFG1-like ATPase
      0.073   12.6   0.1        6.6    6.3   0.0    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.078   12.9   0.2        9.4    6.1   0.0    2.3  2  RsgA_GTPase      RsgA GTPase
      0.092   12.5   1.5       0.15   11.8   0.2    2.1  1  Cytidylate_kin   Cytidylate kinase
       0.18   11.2   0.0        3.5    7.0   0.0    2.3  2  SMC_N            RecF/RecN/SMC N terminal domain
        0.2   11.4   0.0          3    7.6   0.0    2.1  2  AAA_11           AAA domain
       0.24   10.6   0.4         14    4.8   0.1    2.3  2  NB-ARC           NB-ARC domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   8.3e-15   3.2e-12       1     131 [.     286     408 ..     286     409 .. 0.89
   2 !  139.3   0.0   2.5e-43   9.6e-41       1     131 [.     539     669 ..     539     670 .. 0.97

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 8.3e-15
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 vl+ Gp G GK++l++ava  +g+++  + ++el      ++++++r+  +e++    p +l++ +++ala+++      ++  v+ ++ ++l +  + 
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAARVGARVRPVWAPELAALANDAAARRLRAAADEVRGDG-PAVLLVTDVEALAPAD------DAGPVATVFRQVLAETVR- 376
                 799********************************999999************9998.****************......566666666666666555. PP

                 SSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallr.gRfdrkieie 131
                  + v v+++t rp+ +dp l+  + ++ +i ++
  KIR62791.1 377 -AGVAVVCTTSRPEAVDPGLRApDLLSLRITVP 408
                 .46******************999999888876 PP

  == domain 2  score: 139.3 bits;  conditional E-value: 2.5e-43
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.TTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.sgseseeeervvnqLlteldgvkk 98 
                 vllyGppG+GKT+l+ a+a +  +++l+++g+ellsk+vgese+ +relf++a+e a p+ +f+DE+dala+ r + s+ + ++rvv++Llteldgv++
  KIR62791.1 539 VLLYGPPGCGKTYLVTALAGSGRANVLSVKGAELLSKWVGESERAVRELFRRAREAA-PTLVFLDEVDALAPVRgQASDGGTTDRVVAALLTELDGVES 636
                 79******************************************************9.****************87789999***************** PP

                 SSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  99 keskvivigatnrpdkldpallr.gRfdrkieie 131
                   ++v+v+gatnrpd +dpallr gR++r ++++
  KIR62791.1 637 L-RNVVVVGATNRPDLVDPALLRpGRLERLVYVP 669
                 7.55*************************99986 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   2.3       8.3   3.2e+03      18      36 ..     318     336 ..     318     340 .. 0.79
   2 !   40.7   0.5   3.8e-13   1.5e-10       1      43 [.     431     477 ..     431     479 .. 0.86
   3 !   39.1   2.2   1.2e-12   4.9e-10       1      43 [.     692     736 ..     692     738 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 8.3
   AAA_lid_3  18 DlaalcreAallAlrrgik 36 
                 +laal + Aa + lr   +
  KIR62791.1 318 ELAALANDAAARRLRAAAD 336
                 79********888876555 PP

  == domain 2  score: 40.7 bits;  conditional E-value: 3.8e-13
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAall.Alrrgik...eitmedf 43 
                 dv l+e+A rT+G++ ADlaal+reA+ + Alr+++    ++ m+df
  KIR62791.1 431 DVRLDEVAGRTPGFVAADLAALVREAGVRaALRQKTAdapTVAMADF 477
                 899************************88468887655546888887 PP

  == domain 3  score: 39.1 bits;  conditional E-value: 1.2e-12
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgik..eitmedf 43 
                 dvdl++L +  +G+S AD aal+reAal+A+r++++  ++t  + 
  KIR62791.1 692 DVDLAALGAGLDGFSAADCAALVREAALAAMRESLTasTVTAGHV 736
                 9*********************************99644998776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.4   1.5e-08   5.8e-06      14     125 ..     273     373 ..     250     391 .. 0.63
   2 !   19.1   0.1   3.5e-06    0.0014      24      46 ..     536     558 ..     526     579 .. 0.80
   3 ?    6.7   0.0     0.023       8.9     122     169 ..     583     642 ..     569     643 .. 0.65

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.5e-08
      AAA_16  14 salervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpela 112
                 ++l+r+ +g +  vl+ G++G+GKs+lvr+++ ++ ++   +   ++ +l      +ala+ +a+ + lr+ +de + + ++    +  eala   +++
  KIR62791.1 273 EVLGRLGTGVSLGVLVAGPAGSGKSALVRAVAARVGAR---VRPVWAPEL------AALANDAAA-RRLRAAADEVRGDGPAVLLVTDVEALA---PAD 358
                 45666666666*********************999888...566666666......556666645.555666666444333333333333333...222 PP

      AAA_16 113 gaea..srllellkr 125
                 +a++  + ++++l++
  KIR62791.1 359 DAGPvaTVFRQVLAE 373
                 222233455555444 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 3.5e-06
      AAA_16  24 pelvllsGesGvGKsslvrellr 46 
                 p+ vll+G++G+GK+ lv++l+ 
  KIR62791.1 536 PRGVLLYGPPGCGKTYLVTALAG 558
                 599***************99984 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.023
      AAA_16 122 llkrllallsrderplvlvlDdlq........wade.aslql.laaLlrlles....kpllv 169
                 ++++l++++++ + p++++lD+++           + ++ +   aaLl++l+     ++++v
  KIR62791.1 583 AVRELFRRARE-AAPTLVFLDEVDalapvrgqAS-DgGTTDRvVAALLTELDGveslRNVVV 642
                 67889999999.999*********5555555422.143333335666555333222246665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00041      0.16       2      30 ..     286     314 ..     285     321 .. 0.89
   2 !   18.4   0.1   4.2e-06    0.0016       1      79 [.     538     609 ..     538     658 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00041
                 EEEE--SSSSHHHHHHHGGGGBS--EEEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyv 30 
                 vl+ Gp G+gKs l++ +aa+++++v  v
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAARVGARVRPV 314
                 899*******************9888765 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 4.2e-06
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--H CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraes 79 
                 +vlL GppG+gK+ l+  la   +++v+ v + +      l+ ++    g+ ++   +l r ar   + +++lDEv+ + +
  KIR62791.1 538 GVLLYGPPGCGKTYLVTALAGSGRANVLSVKGAE------LLSKWV---GESERAVRELFRRAReaAPTLVFLDEVDALAP 609
                 59*******************9999999998765......888888...77777788999999966677999999996554 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.9e-09   7.6e-07      11      84 ..      20      92 ..      11      94 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.9e-09
                CSSTTEEEE-HHHHHHHTS-TTSEEEEECCCCEEEEEEEBSTTSTTTTEEEE-HHHHHHHT--TTEEEEEEEE- CS
     CDC48_N 11 dvgrgivridpedmeelglepgdvveiegkrkTvaivwpaepedegkgiIrmdgvtRknagvsiGdkVtVrkae 84
                d  rg+vr++pe++ +l l+pgd v++ g+r T+ iv pa p  + +     d+++  n+g + G +VtV++a 
  KIR62791.1 20 DGRRGVVRLHPEVLTALALRPGDPVRLAGRRVTAGIVAPAGPAAS-TALLYADDLLLGNLGERDGGQVTVSPAP 92
                4479***************************************66.9999*********************987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00096      0.37       3      23 ..     286     306 ..     285     315 .. 0.87
   2 ?    0.9   0.0      0.97   3.8e+02      90     132 ..     351     391 ..     330     410 .. 0.72
   3 !    9.8   0.0    0.0018      0.69       3      21 ..     539     557 ..     537     568 .. 0.89
   4 ?    4.0   0.0      0.11        43      55     130 ..     570     650 ..     558     685 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00096
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 v++ G+aGsGK++L++ +a  
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAAR 306
                 7899************99876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.97
                 STT-SS-TCH.........HHHHHCTTTTT--EEEEE.EECCCH CS
       NACHT  90 lDelvtdlgqkekqpvrtlLselirkkllpeaslllt.vrpral 132
                 ++ l+     +++ pv t++++ + +++  ++ ++ t +rp+a+
  KIR62791.1 351 VEALAPA---DDAGPVATVFRQVLAETVRAGVAVVCTtSRPEAV 391
                 3333333...6679***************999988761577776 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0018
                 EEEEC-TTTCHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqkla 21 
                 v+l G++G+GKT+L+  la
  KIR62791.1 539 VLLYGPPGCGKTYLVTALA 557
                 899************9887 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.11
                 CHHHCCCCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH..............HHHHHCTTTTT--EEE.EEEECC CS
       NACHT  55 adllfsqlpepaapvsevwavllelperlLlilDglDelvtdlgq.....kekqpvrtlLselirkkllpeasll.ltvrpr 130
                 a+ll +   e++++v+e    +++ +  +L  lD +D l+   gq      + + v  lL+el   ++l+++ ++ +t rp+
  KIR62791.1 570 AELLSKWVGESERAVRE-LFRRAREAAPTLVFLDEVDALAPVRGQasdggTTDRVVAALLTELDGVESLRNVVVVgATNRPD 650
                 67888888899999999.66677888889999*************9777767777777777776666666665542444555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.8e-05     0.023       1      51 [.     286     332 ..     286     340 .. 0.84
   2 !   10.5   0.0    0.0017      0.65       1      22 [.     539     560 ..     539     604 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.8e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskr 51 
                 +l++G++G+GK+ l ++++ r   g ++r v++ +   l +d++   + +r
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAARV--GARVRPVWAPELAALANDAA--ARRLR 332
                 79*******************9..******99999888888888..44444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0017
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 +ll G+pG+GKt l  +L+ ++
  KIR62791.1 539 VLLYGPPGCGKTYLVTALAGSG 560
                 799***************8774 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0022      0.86      50     140 ..     286     377 ..     281     392 .. 0.63
   2 !   14.9   0.0   4.1e-05     0.016      49      78 ..     538     567 ..     533     616 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0022
   IstB_IS21  50 ivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkra.rrdgklaralkrllkvd.llilDdlgllpldqae..aellfeviekryer 140
                 +++ Gp+G GKs l  a++   +r g +v+ v +++L +  + a  r  ++a    r   ++ ll+ D  +l p d+a   a+++ +v+++ +  
  KIR62791.1 286 VLVAGPAGSGKSALVRAVA---ARVGARVRPVWAPELAALANDAaARRLRAAADEVRGDGPAvLLVTDVEALAPADDAGpvATVFRQVLAETVRA 377
                 7899***********9985...6788899888888887655433033344444444444555055555557888888762234445666666554 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 4.1e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsv 78 
                 +++l Gp+G GK++l +al+ ++ ++ lsv
  KIR62791.1 538 GVLLYGPPGCGKTYLVTALAGSGRANVLSV 567
                 689****************98876665555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   2.9   0.00066      0.26      36     146 ..     286     382 ..     281     384 .. 0.74
   2 !   17.7   0.6   5.1e-06     0.002      36     148 ..     539     642 ..     532     644 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00066
      AAA_25  36 allaGapgtGKttlaldlalava.tGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal..rddarllvldlagveslpLfakdrggtlltadvd 131
                 +l+aG+ g+GK++l+  +a+ v  + +p++ p          ++++      +rRlra+  ++  + +a llv+d+       L+ +d+ g+++t + +
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAARVGaRVRPVWAP------ELAALANDA----AARRLRAAADEVrgDGPAVLLVTDV-----EALAPADDAGPVATVFRQ 369
                 589******************97699999873......333344333....4799999999995445666666665.....346677888888888877 PP

      AAA_25 132 aleaaieevegvrlv 146
                  l++++++  gv++v
  KIR62791.1 370 VLAETVRA--GVAVV 382
                 78888877..67777 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 5.1e-06
      AAA_25  36 allaGapgtGKttlaldlalava.tGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLfakdrggtlltadvdal 133
                 +ll+G+pg+GKt l++ la +      ++ g    e    ++   E +  el rR+r++  +l + +++++         p++ + ++g +++++v+al
  KIR62791.1 539 VLLYGPPGCGKTYLVTALAGSGRaNVLSVKG---AELLSKWVGESERAVRELFRRAREAAPTLVFLDEVDA-------LAPVRGQASDGGTTDRVVAAL 627
                 69*****************987635555555...3778888888888887888888866666544444433.......345556778888889****** PP

      AAA_25 134 eaaieevegvrlvvi 148
                   +++ ve +r vv+
  KIR62791.1 628 LTELDGVESLRNVVV 642
                 ******999888875 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00084      0.33       2      49 ..     286     338 ..     285     372 .. 0.78
   2 !   12.7   0.0    0.0003      0.12       2      25 ..     539     562 ..     538     613 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00084
      AAA_28   2 ivitGgestGKTtlleaLaar.....gypvvpEaareileeklakgedalpwv 49 
                 + + G+ ++GK+ l++a aar       ++ pE a    +  +++ + a+++v
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAARvgarvRPVWAPELAALANDAAARRLRAAADEV 338
                 6789***************9996544444789998877766666666665555 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.0003
      AAA_28   2 ivitGgestGKTtlleaLaargyp 25 
                 + + G++++GKT l+ aLa  g  
  KIR62791.1 539 VLLYGPPGCGKTYLVTALAGSGRA 562
                 6799***************55332 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00089      0.35       2      39 ..     286     333 ..     286     388 .. 0.72
   2 !   11.5   0.1   0.00062      0.24       2      30 ..     539     567 ..     539     707 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00089
      AAA_33   2 vllvGlpGsGKstlaerllkklg..........avllssdtlrrrlfg 39 
                 vl+ G++GsGKs l++ ++++ g             l+ d++ rrl++
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAARVGarvrpvwapeLAALANDAAARRLRA 333
                 7899**************988776555555555455666666665555 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00062
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllss 30 
                 vll G+pG+GK++l++ l+    a +ls 
  KIR62791.1 539 VLLYGPPGCGKTYLVTALAGSGRANVLSV 567
                 7899**************97777777664 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0031       1.2       9      29 ..     287     307 ..     283     350 .. 0.88
   2 !   10.1   0.3    0.0019      0.75       8      27 ..     539     558 ..     534     651 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0031
      AAA_22   9 vvtGesGtGKTtllrrlleql 29 
                 +v G++G+GK+ l+r ++ + 
  KIR62791.1 287 LVAGPAGSGKSALVRAVAARV 307
                 799************999876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0019
      AAA_22   8 lvvtGesGtGKTtllrrlle 27 
                 ++++G++G+GKT+l+  l+ 
  KIR62791.1 539 VLLYGPPGCGKTYLVTALAG 558
                 689***********998875 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0025      0.98      36      72 ..     286     322 ..     281     338 .. 0.87
   2 !   12.2   0.0   0.00029      0.11      35      67 ..     538     570 ..     528     657 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0025
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvleka 72 
                 vl++Gp G Gk++l + +a+ +g++++   +P l   
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAARVGARVRPVWAPELAAL 322
                 89**************************999988754 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00029
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgP 67 
                  vllyGpPG Gkt l + +a    +++ +  g 
  KIR62791.1 538 GVLLYGPPGCGKTYLVTALAGSGRANVLSVKGA 570
                 69**************99998877776655554 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.014       5.6       2      21 ..     287     306 ..     286     338 .. 0.79
   2 !   14.2   0.0   6.8e-05     0.027       5      71 ..     543     604 ..     539     610 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.014
  Viral_helicase1   2 vvhGvpGcGKStlirkllrt 21 
                      +v+G +G+GKS l+r ++  
       KIR62791.1 287 LVAGPAGSGKSALVRAVAAR 306
                      799***********999876 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 6.8e-05
  Viral_helicase1   5 GvpGcGKStlirkllrts.liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEy 71 
                      G pGcGK+ l+  l+ +   ++ +++  aell++++ ++++   + ++ + +a+       +++lDE 
       KIR62791.1 543 GPPGCGKTYLVTALAGSGrANVLSVKG-AELLSKWVGESERAVRELFRRAREAAP-----TLVFLDEV 604
                      78*************999877666666.********7777776666666666654.....27788886 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   1.4   0.00016     0.062      21      65 ..     286     334 ..     272     384 .. 0.78
   2 ?    6.3   0.0     0.018       6.9      21      45 ..     539     563 ..     528     614 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00016
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrvi...glAptgkaAkv.Laee 65 
                 +++ GpAG+GK+ +++a+++ + a+ ++v    ++A  + aA++ L+++
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAARVGARVRPVWapeLAALANDAAARrLRAA 334
                 6799**************9999999766664445666655554437754 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.018
      AAA_30  21 avltGpAGtGKttalkalreaweaa 45 
                 ++l Gp+G GKt++++al+   +a+
  KIR62791.1 539 VLLYGPPGCGKTYLVTALAGSGRAN 563
                 6889***********9998765555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   0.00018     0.068      25      43 ..     286     304 ..     270     309 .. 0.89
   2 ?    5.4   0.0     0.038        15      21      42 ..     536     556 ..     526     559 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00018
      AAA_29  25 tlltGpsGsGKSTllDAiq 43 
                 +l++Gp GsGKS+l+ A++
  KIR62791.1 286 VLVAGPAGSGKSALVRAVA 304
                 89*************9986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.038
      AAA_29  21 lkgatlltGpsGsGKSTllDAi 42 
                 ++g +ll Gp G GK+ l+ A+
  KIR62791.1 536 PRG-VLLYGPPGCGKTYLVTAL 556
                 467.9***********999776 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.013       5.2       1      25 [.     286     310 ..     286     326 .. 0.85
   2 !   11.8   0.0    0.0006      0.23       1      19 [.     539     557 ..     539     574 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.013
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkk 25 
                   +++ Gp+g GKS l++ +a+++  +
    KIR62791.1 286 VLVAGPAGSGKSALVRAVAARVGAR 310
                   5789*************99988755 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.0006
  RNA_helicase   1 iwlyGpsgeGKStlakeLa 19 
                   ++lyGp+g+GK++l++ La
    KIR62791.1 539 VLLYGPPGCGKTYLVTALA 557
                   689************9987 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1    0.0015      0.58      52      78 ..     285     311 ..     278     317 .. 0.89
   2 !    8.5   0.0    0.0027         1      51     106 ..     537     591 ..     532     599 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0015
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  52 avLlaGpsgtGktalaiaiskelgedv 78 
                 +vL+aGp+g+Gk+al  a++  +g+ v
  KIR62791.1 285 GVLVAGPAGSGKSALVRAVAARVGARV 311
                 79******************9999766 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0027
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkkte.vltqalrks 106
                 r+vLl Gp+g Gkt l  a++ +        +++g+e+ s  v  +e ++ + +r++
  KIR62791.1 537 RGVLLYGPPGCGKTYLVTALAGSGR--ANVLSVKGAELLSKWVGESErAVRELFRRA 591
                 89******************98744..566899999999999999884577788886 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1    0.0019      0.74      13      68 ..     286     341 ..     281     514 .. 0.80
   2 !    8.5   0.0    0.0062       2.4      12      31 ..     538     557 ..     531     642 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0019
      AAA_19  13 llvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae 68 
                 +lv +++G+GK+ +++++ a + ++ +   ++ l++  +  Aa++lr + +++ ++
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAARVGARVRPVWAPELAALANDAAARRLRAAADEVRGD 341
                 6889999******9999988887766554566777777888999999988777665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0062
      AAA_19  12 vllvtaGpGtGKTrvlkhiv 31 
                  +l+ ++pG+GKT+++++  
  KIR62791.1 538 GVLLYGPPGCGKTYLVTALA 557
                 5899**********998765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.2     0.019       7.4      15      33 ..     287     305 ..     279     310 .. 0.86
   2 !   11.2   0.0     0.001       0.4       7      36 ..     532     561 ..     529     642 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.019
                 EEEESTTSSHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllag 33 
                  + G+ G+GKS L++++a 
  KIR62791.1 287 LVAGPAGSGKSALVRAVAA 305
                 578************9876 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.001
                 EEETTSEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagllk 36 
                  +++ + v + G+ G+GK+ L+ +lag  +
  KIR62791.1 532 GVQPPRGVLLYGPPGCGKTYLVTALAGSGR 561
                 667777899*****************9865 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       1.3   4.9e+02       5      24 ..     286     305 ..     284     317 .. 0.87
   2 !   16.8   0.0   1.3e-05    0.0052       5      76 ..     539     607 ..     536     642 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 1.3
      AAA_14   5 lvitGaRrvGKTtllkqlik 24 
                 +++ G+  +GK+ l++ ++ 
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAA 305
                 6899**********998875 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.3e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 +++ G+  +GKT+l+  l+ +      ++l ++  +   k   ++e+  ++++++++e   t++flDE+  +
  KIR62791.1 539 VLLYGPPGCGKTYLVTALAGSGR---ANVLSVKGAELLSKWVGESERAVRELFRRAREAAPTLVFLDEVDAL 607
                 7899**************98877...99999999998888877776555555555455689*******9865 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0046       1.8      19      41 ..     286     308 ..     284     314 .. 0.87
   2 !    9.0   0.0     0.002      0.78      16      50 ..     536     568 ..     527     573 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0046
  Zeta_toxin  19 illgGqpGAGKselaellkdele 41 
                 +l++G  G+GKs+l ++++++++
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAARVG 308
                 79***************998875 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.002
  Zeta_toxin  16 PklillgGqpGAGKselaellkdelerqgnvvrld 50 
                 P  +ll G pG+GK++l ++l+ +   + nv+ ++
  KIR62791.1 536 PRGVLLYGPPGCGKTYLVTALAGSG--RANVLSVK 568
                 7889*****************9998..77777766 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.2    0.0013      0.51      55      78 ..     285     308 ..     278     315 .. 0.88
   2 !    6.9   0.0    0.0078       3.1      51      81 ..     534     564 ..     495     603 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0013
      DUF815  55 nvLLwGarGtGKSslvkallneya 78 
                  vL+ G  G+GKS+lv+a+ +++ 
  KIR62791.1 285 GVLVAGPAGSGKSALVRAVAARVG 308
                 599****************98875 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0078
      DUF815  51 lpannvLLwGarGtGKSslvkallneyaeeg 81 
                 +p + vLL+G  G+GK  lv al  + +++ 
  KIR62791.1 534 QPPRGVLLYGPPGCGKTYLVTALAGSGRANV 564
                 56778*****************987766655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0021      0.83      21      48 ..     278     314 ..     254     322 .. 0.72
   2 ?    7.5   0.0      0.01         4      21      41 ..     534     558 ..     502     568 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0021
                 E.......EEEEESTTSSHHHHHHHHHHHTT--..-- CS
        TsaE  21 v.......ilLeGdLGaGKTtlvrglakalgve..ev 48 
                 +       +l  G+ G+GK++lvr++a+ +g +  +v
  KIR62791.1 278 LgtgvslgVLVAGPAGSGKSALVRAVAARVGARvrPV 314
                 13334455999*****************999865455 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.01
                 E....EEEEESTTSSHHHHHHHHHH CS
        TsaE  21 v....ilLeGdLGaGKTtlvrglak 41 
                      +lL+G+ G+GKT lv +la 
  KIR62791.1 534 QpprgVLLYGPPGCGKTYLVTALAG 558
                 144449**************99975 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0044       1.7      11      43 ..     274     306 ..     272     312 .. 0.81
   2 !    8.4   0.0    0.0045       1.8      22      39 ..     538     555 ..     530     562 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0044
    ATPase_2  11 leeilerepneiyfiYGpegsGKtaLlkeiien 43 
                 ++  l ++ +  +++ Gp gsGK+aL++ ++ +
  KIR62791.1 274 VLGRLGTGVSLGVLVAGPAGSGKSALVRAVAAR 306
                 556666777777899*************99876 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0045
    ATPase_2  22 iyfiYGpegsGKtaLlke 39 
                  +++YGp g+GKt L+  
  KIR62791.1 538 GVLLYGPPGCGKTYLVTA 555
                 5789**********9875 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.022       8.7      48      75 ..     286     313 ..     282     329 .. 0.88
   2 !    9.0   0.0    0.0031       1.2      43      66 ..     534     557 ..     528     569 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.022
       Rad17  48 LLisGPsGCgkstvvkvLskelgiklre 75 
                 +L++GP+G gks  v+ ++   g ++r 
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAARVGARVRP 313
                 599****************999999875 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0031
       Rad17  43 rkkriLLisGPsGCgkstvvkvLs 66 
                 ++ r +L+ GP+GCgk+  v  L+
  KIR62791.1 534 QPPRGVLLYGPPGCGKTYLVTALA 557
                 55666899*********9999887 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.019       7.3      35      55 ..     285     305 ..     277     313 .. 0.86
   2 !    7.9   0.0    0.0051         2      29      54 ..     532     557 ..     524     570 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.019
       AAA_7  35 pvllvGptGtGKtviikdllk 55 
                  vl+ Gp+G+GK+++++ +  
  KIR62791.1 285 GVLVAGPAGSGKSALVRAVAA 305
                 599************998655 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0051
       AAA_7  29 llknkkpvllvGptGtGKtviikdll 54 
                  ++  + vll+Gp G+GKt +++ l 
  KIR62791.1 532 GVQPPRGVLLYGPPGCGKTYLVTALA 557
                 5666788*************998765 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0019      0.74      21     108 ..     283     386 ..     279     391 .. 0.76
   2 ?    4.2   0.0      0.11        42      23      50 ..     538     565 ..     532     610 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0019
                      SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-HHHHHHH....T.......TTSEEEEEE-TT--HHHHHH.....HHHHHHHHTT CS
  Sigma54_activ_2  21 klpvfltGekGsgkelvArlLhknsgpwleifvverlaklpldlleq....a.......kggtLylkdiadlskaeqke.....Llellakaek 98 
                      +l v+++G++Gsgk+   r+ +   g  + ++   +la+l  d  ++    a        +++L++ d++ l +a+ ++       ++la+  +
       KIR62791.1 283 SLGVLVAGPAGSGKSALVRAVAARVGARVRPVWAPELAALANDAAARrlraAadevrgdGPAVLLVTDVEALAPADDAGpvatvFRQVLAETVR 376
                      5779****************************999999877666555444324556666899**********9998776322223444555557 PP

                      TT-EEEEEEE CS
  Sigma54_activ_2  99 sslrlVstss 108
                        + +V+t+s
       KIR62791.1 377 AGVAVVCTTS 386
                      7777777776 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.11
                      -EEEEEETT--HHHHHHCC--TTS-EE- CS
  Sigma54_activ_2  23 pvfltGekGsgkelvArlLhknsgpwle 50 
                       v+l G++G+gk++   +L+ ++  ++ 
       KIR62791.1 538 GVLLYGPPGCGKTYLVTALAGSGRANVL 565
                      59************99999877665544 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.039        15      25      43 ..     286     304 ..     267     312 .. 0.90
   2 !    9.4   0.1    0.0016      0.63      25      43 ..     539     557 ..     532     570 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.039
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +l++Gp+GsGK+ l ++++
    KIR62791.1 286 VLVAGPAGSGKSALVRAVA 304
                   799**********998875 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0016
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +ll+GppG+GKt l ++l+
    KIR62791.1 539 VLLYGPPGCGKTYLVTALA 557
                   89************99886 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.22        87       5      21 ..     286     302 ..     283     314 .. 0.86
   2 !   10.7   0.0    0.0008      0.31       5      22 ..     539     556 ..     536     607 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.22
      AAA_24   5 iliyGpsgiGKTtlake 21 
                 +l+ Gp+g+GK+ l++ 
  KIR62791.1 286 VLVAGPAGSGKSALVRA 302
                 799*********99875 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0008
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l+yGp+g GKT+l++ l
  KIR62791.1 539 VLLYGPPGCGKTYLVTAL 556
                 79************9988 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2     0.022       8.7      22      42 ..     286     306 ..     282     312 .. 0.86
   2 ?    0.5   0.0      0.91   3.6e+02     103     131 ..     479     507 ..     430     515 .. 0.80
   3 ?    6.8   0.0     0.011       4.2      22      40 ..     539     557 ..     534     563 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.022
                 EEEE--TTSSTTHHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalave 42 
                 v ++GpaG+GK+ l  a+a++
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAAR 306
                 6789*********99988876 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.91
                 TSEEEEEGGGGTT--B-SEEEEE-SGGG- CS
        PhoH 103 gkievaplaymRGrTlndafvilDEAQnt 131
                   +ev+  + m G Tl+ a v lD+  ++
  KIR62791.1 479 AALEVVRPTTMAGSTLELADVTLDDVGDM 507
                 5789999999*******999999997665 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.011
                 EEEE--TTSSTTHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavala 40 
                 v   Gp G+GKtyl +ala
  KIR62791.1 539 VLLYGPPGCGKTYLVTALA 557
                 5678**********99987 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0082       3.2       2      37 ..     286     318 ..     285     331 .. 0.88
   2 ?    4.7   0.0     0.067        26       2      32 ..     539     569 ..     538     604 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0082
                 EEEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkvgGfytee 37 
                 v++ Gp G+GK+ lv+ v+  +   g +v+ ++++e
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAARV---GARVRPVWAPE 318
                 789****************999...88888887777 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.067
                 EEEE--TTSSHHHHHHHHHHHH...GGGEEE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkvgG 32 
                 v++ GppG GKt lv  ++   + + ++v+G
  KIR62791.1 539 VLLYGPPGCGKTYLVTALAGSGRANVLSVKG 569
                 6788***********9998887777777777 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0062       2.4      22      64 ..     283     325 ..     273     333 .. 0.85
   2 ?    3.0   0.0      0.19        76      23      42 ..     537     556 ..     527     573 .. 0.84
   3 ?   -0.7   0.0       2.5   9.8e+02      90     107 ..     592     609 ..     579     615 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0062
                      SS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TT CS
  Sigma54_activat  22 dlsvlitGesGtGKellaraiheaskrkekpfvavncaaipee 64 
                      +l vl+ G  G+GK+ l ra+ ++   + +p+ a + aa++++
       KIR62791.1 283 SLGVLVAGPAGSGKSALVRAVAARVGARVRPVWAPELAALAND 325
                      5779*****************9999999999888888887665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.19
                      S-EEEECSTTSSHHHHHHHH CS
  Sigma54_activat  23 lsvlitGesGtGKellarai 42 
                        vl+ G  G+GK++l +a+
       KIR62791.1 537 RGVLLYGPPGCGKTYLVTAL 556
                      579************99887 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.5
                      HHTTTSEEEEETGGGS-H CS
  Sigma54_activat  90 ekadgGtlfLDeigelpl 107
                      ++a    +fLDe+  l +
       KIR62791.1 592 REAAPTLVFLDEVDALAP 609
                      46777889*****99853 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.054        21     127     151 ..      70      94 ..      58     104 .. 0.89
   2 ?    5.2   0.1     0.033        13      71     128 ..     454     516 ..     438     518 .. 0.80
   3 ?    1.2   0.1      0.57   2.2e+02      35      93 ..     706     761 ..     696     765 .] 0.82

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.054
  Glyco_transf_21 127 AeDyalgkllraaGlkvvlspapia 151
                      A+D+ lg+l  + G +v +spap++
       KIR62791.1  70 ADDLLLGNLGERDGGQVTVSPAPVV 94 
                      9**********************87 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.033
  Glyco_transf_21  71 dakglaaaleaafl....ntlagvlqa.klsglgfavGksmalrreaLeaiGGfealadeLAe 128
                      +++g+ aal +        ++a +++a ++ +  ++ G+++ l   +L+++G++ +++++L e
       KIR62791.1 454 REAGVRAALRQKTAdaptVAMADFAAAlEVVRPTTMAGSTLELADVTLDDVGDMVEVKQTLTE 516
                      5556666665555443325678888888899*****************************988 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.57
  Glyco_transf_21  35 visDsdvrvkpdyLeellaaledpkvglVtslpvgsdakglaaaleaaflntlagvlqa 93 
                        +D+ ++v++ +L+ + ++l+    + Vt+ +v ++++ +   l  a+++ la+++qa
       KIR62791.1 706 SAADCAALVREAALAAMRESLTA---STVTAGHVETARQRVRPSLDPAQVAWLAAYAQA 761
                      678999****************6...899999999888888888877777777766666 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       1.1   4.3e+02       6      28 ..     286     308 ..     283     361 .. 0.78
   2 ?   11.1   0.0   0.00079      0.31       6     105 ..     539     633 ..     535     636 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 1.1
                 EEEE--TTSSHHHHHHHHHHHTT CS
       AAA_2   6 illlgptgvGktelakalaellf 28 
                 +l++gp g+Gk+ l +a+a    
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAARVG 308
                 689************99998765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00079
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG----.---------HHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpk.essgadvSregVqrdLLq 101
                 +ll gp g+Gkt+l  ala   ++    ++  +   ell     + + +++   ++   +a e     v+lDE+d  +p  ++++     + V+ +LL 
  KIR62791.1 539 VLLYGPPGCGKTYLVTALAGSGRA----NVLSVKGAELLS----KWVGESERAVRELFRRAREAAptLVFLDEVDALAPVrGQASDGGTTDRVVAALLT 629
                 6789***************99985....666666667777....44444444455555555555577************86566666666778888887 PP

                 HHH- CS
       AAA_2 102 ileg 105
                  l+g
  KIR62791.1 630 ELDG 633
                 7776 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0015      0.59       1      23 [.     288     310 ..     288     316 .. 0.84
   2 ?    2.1   0.1      0.37   1.4e+02       2      17 ..     542     557 ..     541     567 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0015
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelr 23 
                 v+GpaGsGK+ +v+a++  + +r
  KIR62791.1 288 VAGPAGSGKSALVRAVAARVGAR 310
                 89*************98876655 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.37
  ATP_bind_1   2 vGpaGsGKttfvgals 17 
                  Gp+G GKt++v al+
  KIR62791.1 542 YGPPGCGKTYLVTALA 557
                 69**********9986 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.015         6      91     107 ..     287     303 ..     277     308 .. 0.83
   2 ?    5.6   0.1     0.015       5.9      84     108 ..     532     557 ..     527     565 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.015
  Adeno_IVa2  91 viyGPtGsGksqllrnl 107
                 ++ GP+GsGks l+r++
  KIR62791.1 287 LVAGPAGSGKSALVRAV 303
                 368************97 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.015
  Adeno_IVa2  84 glqPviGv.iyGPtGsGksqllrnli 108
                 g qP  Gv +yGP G+Gk+ l+ +l 
  KIR62791.1 532 GVQPPRGVlLYGPPGCGKTYLVTALA 557
                 7788889846************9986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.081        32       2      25 ..     286     310 ..     285     315 .. 0.82
   2 ?    6.3   0.1     0.024       9.5       2      30 ..     539     568 ..     538     574 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.081
                 EEEEESTTSSHHHHHHHHHTS.TEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kai 25 
                 v+++G   +GKS L++a   +  a+
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAARvGAR 310
                 7899*************98764455 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.024
                 EEEEESTTSSHHHHHHHHHTS.TEEESSST CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkp 30 
                 v+++G p  GK+ L+ al g+ +a v + +
  KIR62791.1 539 VLLYGPPGCGKTYLVTALAGSgRANVLSVK 568
                 7899****************9888886555 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0037       1.5      25      45 ..     468     488 ..     460     492 .. 0.86
   2 ?    1.6   0.0      0.69   2.7e+02      22      51 ..     724     753 ..     717     760 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0037
      Vps4_C  25 lePpvtlkDflkalkkarptV 45 
                  +P v + Df +al+ +rpt 
  KIR62791.1 468 DAPTVAMADFAAALEVVRPTT 488
                 689****************95 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.69
      Vps4_C  22 dkllePpvtlkDflkalkkarptVskeDLe 51 
                 + l++  vt  +++ a +++rp+  +++++
  KIR62791.1 724 ESLTASTVTAGHVETARQRVRPSLDPAQVA 753
                 5678889****************9988765 PP

>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.4   5.3e+02      64      81 ..     285     302 ..     238     390 .. 0.63
   2 ?    9.9   0.0   0.00078       0.3      58      80 ..     532     554 ..     482     558 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.4
  AFG1_ATPase  64 glYlwGgvGrGKtylmdl 81 
                  g+ + G+ G GK+ l+  
   KIR62791.1 285 GVLVAGPAGSGKSALVRA 302
                  666667777777776643 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00078
  AFG1_ATPase  58 svepvrglYlwGgvGrGKtylmd 80 
                   v+p+rg+ l+G+ G GKtyl+ 
   KIR62791.1 532 GVQPPRGVLLYGPPGCGKTYLVT 554
                  589******************85 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.017       6.6       3      22 ..     286     305 ..     284     335 .. 0.78
   2 ?    3.8   0.1     0.096        37       4      21 ..     540     557 ..     538     567 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.017
                 EEEEESTTCCHHHHHHHHHC CS
        cobW   3 tvltGflGsGKTtLlnhlle 22 
                 ++++G+ GsGK++L++++ +
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAA 305
                 5799***********99873 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.096
                 EEEESTTCCHHHHHHHHH CS
        cobW   4 vltGflGsGKTtLlnhll 21 
                 +l G++G GKT L+++l 
  KIR62791.1 540 LLYGPPGCGKTYLVTALA 557
                 688***********9886 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.024       9.4     103     129 ..     287     313 ..     272     317 .. 0.87
   2 ?    4.2   0.0     0.092        36     102     131 ..     539     568 ..     532     575 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.024
                  EEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpelelktge 129
                  +++G+ G GKS+L+ a++ +  ++++ 
   KIR62791.1 287 LVAGPAGSGKSALVRAVAARVGARVRP 313
                  679*************99988877765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.092
                  EEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelktgevs 131
                  ++l G+ G GK+ L+ al+++ ++++ +v+
   KIR62791.1 539 VLLYGPPGCGKTYLVTALAGSGRANVLSVK 568
                  6899***************99888877765 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00038      0.15       3      25 ..     288     310 ..     286     312 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00038
                     EE-STTSSHHHHHHHHHHHHT-E CS
  Cytidylate_kin   3 iDGPagsGKssvaralaeklglk 25 
                     + GPagsGKs++ ra+a ++g++
      KIR62791.1 288 VAGPAGSGKSALVRAVAARVGAR 310
                     67*****************9986 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0089       3.5      28      49 ..     287     308 ..     273     335 .. 0.83
   2 ?    1.3   0.0      0.49   1.9e+02      28      44 ..     540     556 ..     532     579 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0089
                 EEEESTTSSHHHHHHHHHHHCT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLG 49 
                  + Gp GSGKs l+ A+    G
  KIR62791.1 287 LVAGPAGSGKSALVRAVAARVG 308
                 589*************976666 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.49
                 EEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAi 44 
                  ++Gp G+GK+ l+ A+
  KIR62791.1 540 LLYGPPGCGKTYLVTAL 556
                 689**********9998 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.65   2.5e+02      20      42 ..     286     308 ..     278     349 .. 0.77
   2 ?    7.6   0.0    0.0076         3      20      40 ..     539     559 ..     529     597 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.65
      AAA_11  20 tliqGPPGtgKTktivellsqll 42 
                 +l+ GP G+gK+  + ++ +++ 
  KIR62791.1 286 VLVAGPAGSGKSALVRAVAARVG 308
                 5899********99999988874 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0076
      AAA_11  20 tliqGPPGtgKTktivellsq 40 
                 +l+ GPPG+gKT  +++l  +
  KIR62791.1 539 VLLYGPPGCGKTYLVTALAGS 559
                 6999********999888755 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.035        14       9      41 ..     275     304 ..     270     309 .. 0.74
   2 ?    3.3   0.0       0.1        39      23      38 ..     539     554 ..     533     559 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.035
                 HHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHC CS
      NB-ARC   9 iekLlekdelqslvvalvGmgGvGKttlakqil 41 
                  ++L    +l+   v + G +G+GK+ l++ + 
  KIR62791.1 275 LGRLGTGVSLG---VLVAGPAGSGKSALVRAVA 304
                 55555444444...889***********99875 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.1
                 EEEEESTTSSHHHHHH CS
      NB-ARC  23 valvGmgGvGKttlak 38 
                 v l+G +G+GKt l++
  KIR62791.1 539 VLLYGPPGCGKTYLVT 554
                 679*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              46  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 5227.72
//
Query:       KIR62792.1  [L=229]
Description: hypothetical protein TK50_17715 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1648.66
//
Query:       KIR62793.1  [L=154]
Description: dynein regulation protein LC7 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-13   50.3   0.8      2e-13   49.9   0.8    1.1  1  Robl_LC7  Roadblock/LC7 domain


Domain annotation for each model (and alignments):
>> Robl_LC7  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.8   1.1e-17     2e-13       2      91 .]      26     116 ..      25     116 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 1.1e-17
                 HHHHHHHCCHHCTECEEEEEETTS-EEEECCS.SSS-HHHHHHHHHHHHHHHHHHHHHCTSSSECEEEEEETTEEEEEEECTTTEEEEEEE CS
    Robl_LC7   2 veelleelqsvpgvrgalvvskdGlviatstl.dnddadqlAalasgllsaakaaarelgegelkelliegkkgelyltpagegalLvvla 91 
                 +++l++ + s++gv  a+ vs+dGl++a+s++ d+++a++lAa++sg +s+a +aa+    g+l  +++++++g+l++ +   g++L+v+a
  KIR62793.1  26 NWLLDSFTSSTAGVMEAIAVSSDGLLMAMSAIkDRSNAERLAAVVSGMTSLAGGAASWYALGGLNRVIVDMADGYLLISSISAGSVLGVVA 116
                 699**************************66636789**************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1258.32
//
Query:       KIR62794.1  [L=937]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.5e-14   52.4   6.5    9.5e-14   52.4   6.5    2.0  2  NIT          Nitrate and nitrite sensing
    6.8e-10   39.2   3.8      3e-09   37.1   2.5    2.8  3  HAMP         HAMP domain
      1e-06   29.2   0.0    1.8e-06   28.4   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
     0.0044   17.0   1.4     0.0074   16.2   0.1    2.2  2  HATPase_c_2  Histidine kinase-like ATPase domain
     0.0063   16.3   0.0      0.012   15.5   0.0    1.3  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
  ------ inclusion threshold ------
      0.086   12.8   0.0        6.1    6.8   0.0    2.8  2  SCAB-ABD     Actin-binding domain of plant-specific actin-bin


Domain annotation for each model (and alignments):
>> NIT  Nitrate and nitrite sensing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   6.5   3.2e-17   9.5e-14       2     178 ..      56     231 ..      55     283 .. 0.80
   2 ?   -4.9   3.5         6   1.8e+04      29     169 ..     329     351 ..     287     430 .. 0.57

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 3.2e-17
         NIT   2 LvhaLQkERglsagylasgggerkaaelaaqraatDaalaalra.l.aglarrldallraldqLpalRrqvdtrkldakeavaaYtdviaaLldlade. 97 
                 Lv++LQ+ER ls+g l +  +   ++e+ +  a +D+ +a +ra l ++l +r++ +l+++ +L+++R++v +++++++ +++a+  +  +L+d ++  
  KIR62794.1  56 LVQDLQQERLLSVGLLLGRAS---RTEVIQKSATVDDRVADIRAeLgGQLTDRVRLALDQVRGLADVRAAVLAGRATPARVMEAFGPLAVELIDSLRLt 151
                 99***************7434...666*************9995588999*********************99*********************99997 PP

         NIT  98 .laqgspdrelarqlralaalsrakEalsqerallaaala.agrfsaalyaaflslvarqqaalaefraaatpaqra..lydetv 178
                   ++++++  + +q+ al  l+ra E+l++   l++ + a +   +++  a++++  a+     + fr+  tp+q +  l+d++ 
  KIR62794.1 152 wKVDTTTP--VGQQVLALDGLLRADESLGACATLIVLVRAtS---DPKTVASYIACMAALSVDTDRFRSLVTPEQLElaLLDDAA 231
                 76666655..********************999998888844...5777777777777766666777777777766655666554 PP

  == domain 2  score: -4.9 bits;  conditional E-value: 6
         NIT  29 laaqraatDaalaalralaglarrldallraldqLpalRrqvdtrkldakeavaaYtdviaaLldladelaqgspdrelarqlralaalsrakEalsqe 127
                 l++  +++ +                                                                                         
  KIR62794.1 329 LTRSAERVAR----------------------------------------------------------------------------------------- 338
                 3333333333......................................................................................... PP

         NIT 128 rallaaalaagrfsaalyaaflslvarqqaalaefraaatpa 169
                                              aa ae++++a+++
  KIR62794.1 339 -----------------------------AAEAELVRVADDE 351
                 .............................3333333333333 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   2.5     1e-12     3e-09       2      50 ..     318     384 ..     317     387 .. 0.82
   2 ?   -1.5   0.0       1.2   3.5e+03      13      24 ..     681     692 ..     679     704 .. 0.92
   3 ?   -2.2   0.0       1.9   5.7e+03      30      45 ..     900     915 ..     880     916 .. 0.77

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1e-12
                 HHHTTHHHHHHHHHHHHHHTTT...............BTSST......CCTTSSSHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaG...............dldtr......lpvsgrDEiGeLarafNaMldr 50 
                 +ar + rPL rL+r+a+r+a+                    +      ++v+grDEiG+Laraf++ ++ 
  KIR62794.1 318 VARLVARPLTRLTRSAERVARAaeaelvrvaddesenV---PpirldpVDVRGRDEIGDLARAFERVQHT 384
                 89******************866788999998665550...1555556999***************9976 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.2
                 HHHHHHHHTTTB CS
        HAMP  13 LaraarriaaGd 24 
                 L+ra+r++ +Gd
  KIR62794.1 681 LSRATRSMESGD 692
                 89********98 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.9
                 CTTSSSHHHHHHHHHH CS
        HAMP  30 pvsgrDEiGeLarafN 45 
                 ++  + E+++L+  f+
  KIR62794.1 900 DPGDPGEVRDLINQFE 915
                 457789*****99987 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   6.1e-10   1.8e-06       5     109 ..     506     609 ..     503     612 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 6.1e-10
                 HHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEE CS
   HATPase_c   5 rLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGtt 103
                  L  ++ +l++Na  f+++ +++ v+ +++    ++sv D GiG+++e l +  +++++ +++ +    + lGl +v +l++++g ++ +  + g+G t
  KIR62794.1 506 DLVLALAELMENATVFSPPHTRVVVTAEPTGHGMRLSVVDHGIGMTEERLAEENARLTR-RERLDLAPTEVLGLFVVGRLARRHGWTVDLAPTTGGGVT 603
                 5777899*********77777777777755589******************88889999.777778888999******************999999999 PP

                 EEEEEE CS
   HATPase_c 104 ftftlp 109
                  ++++p
  KIR62794.1 604 ARLEVP 609
                 999888 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   2.5e-06    0.0074      15     109 ..     490     585 ..     476     603 .. 0.79
   2 ?   -3.2   0.2       2.7   7.9e+03       2      26 ..     813     837 ..     812     840 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.5e-06
  HATPase_c_2  15 aeavlrraglseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep....keslkegGrGlalikgl 108
                    +v + +  +++++ ++ la++E++ Na     ++    +v v++e ++  ++++v D+G g + e l+++++        + ++++ +Gl+++ +l
   KIR62794.1 490 DVQVPAGVSAAPSTVGDLVLALAELMENATVFSPPH---TRVVVTAEPTGHGMRLSVVDHGIGMTEERLAEENARLTrrerLDLAPTEVLGLFVVGRL 584
                  55565667788999*******************997...66**********************77776666554333566666677777788877777 PP

  HATPase_c_2 109 v 109
                  +
   KIR62794.1 585 A 585
                  6 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.7
  HATPase_c_2   2 sadpehvrtvrevaeavlrraglse 26 
                  +adp+  r++ e +ea  rra+l +
   KIR62794.1 813 TADPAAARALVEEFEAGVRRAELHP 837
                  7999999999999999999988876 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.9e-06     0.012       5      80 ..     509     585 ..     506     590 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.9e-06
  HATPase_c_3   5 kAlaelvdNsldAdaenvkievnknr.gktgeivieDdGkGmseeelkn.alrlatsskeakrkstslGkkGiGlklA 80 
                   Alael +N++  +  +  ++v  ++ g+  ++++ D G Gm+ee l +   rl + ++      ++lG + +G +lA
   KIR62794.1 509 LALAELMENATVFSPPHTRVVVTAEPtGHGMRLSVVDHGIGMTEERLAEeNARLTRRERLDLAPTEVLGLFVVG-RLA 585
                  69********986655555555544437889****************987889999999888888888888888.777 PP

>> SCAB-ABD  Actin-binding domain of plant-specific actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.002       6.1      23      40 ..     373     390 ..     363     392 .. 0.90
   2 ?    2.6   0.0     0.043   1.3e+02      21      35 ..     907     921 ..     906     924 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.002
    SCAB-ABD  23 DLasKFekglaAAakLse 40 
                 DLa  Fe+ + +Aa+L+e
  KIR62794.1 373 DLARAFERVQHTAARLVE 390
                 9***************97 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.043
    SCAB-ABD  21 VRDLasKFekglaAA 35 
                 VRDL + Fe g a A
  KIR62794.1 907 VRDLINQFEAGVARA 921
                 9********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (937 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.39
# Mc/sec: 7155.30
//
Query:       KIR62795.1  [L=410]
Description: hypothetical protein TK50_17740 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3151.18
//
Query:       KIR62796.1  [L=956]
Description: ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-27   97.2   0.0    1.8e-27   96.5   0.0    1.3  1  ABC_tran       ABC transporter
    5.7e-19   68.8   0.1    1.4e-17   64.2   0.2    2.1  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
    1.2e-16   61.4   0.1    2.2e-16   60.5   0.1    1.4  1  PepX_C         X-Pro dipeptidyl-peptidase C-terminal non-cata
    4.7e-15   55.5   0.1    1.2e-12   47.6   0.1    2.3  2  Hydrolase_4    Serine aminopeptidase, S33
    1.2e-14   54.6   0.0    1.3e-11   44.7   0.1    2.3  2  Abhydrolase_1  alpha/beta hydrolase fold
    2.1e-10   40.5   0.0    2.6e-06   27.2   0.0    2.6  2  DLH            Dienelactone hydrolase family
    1.3e-09   37.9   0.0    0.00058   19.4   0.1    2.5  2  Peptidase_S9   Prolyl oligopeptidase family
    6.5e-09   36.0   0.1    0.00039   20.3   0.0    2.2  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
      9e-06   24.6   0.3     0.0012   17.6   0.3    2.1  1  AXE1           Acetyl xylan esterase (AXE1)
    0.00055   19.7   0.0     0.0082   15.8   0.0    2.2  1  Esterase       Putative esterase
     0.0011   18.8   0.1      0.025   14.4   0.0    2.3  2  Abhydrolase_3  alpha/beta hydrolase fold
     0.0058   16.6   0.0      0.095   12.6   0.0    2.1  2  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
  ------ inclusion threshold ------
      0.046   14.2   0.0      0.072   13.6   0.0    1.1  1  AAA_23         AAA domain
      0.062   13.0   0.0        1.4    8.5   0.0    2.2  2  FSH1           Serine hydrolase (FSH1)
      0.068   13.3   0.0       0.19   11.9   0.0    1.7  1  Abhydrolase_4  TAP-like protein
       0.11   12.2   0.1       0.36   10.5   0.0    1.9  2  AAA_30         AAA domain
        1.8    8.8   6.1        1.1    9.5   1.5    2.7  2  MHYT           Bacterial signalling protein N terminal repeat


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   1.7e-30   1.8e-27       2     136 ..     671     810 ..     670     811 .. 0.94

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 1.7e-30
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...........esdeeiekal 89 
                 +nv++++++g++v+++G+nGaGK+t l++l+gl++pt+Gei + g+ l     + + ++ig l + p + p+l+  en           ++d+++++al
  KIR62796.1 671 SNVDFEVHPGQVVGLLGPNGAGKTTTLRVLMGLTQPTAGEIYVFGRRLVP--GSPVLSRIGALVEGPGFLPHLSGLENlkaywratgrpWADAHFDEAL 767
                 79*********************************************999..8889999***************99********999999999999999 PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +  gl +  +++     +++S+G++qr+a+a+a+l  p+ll+lDEpt
  KIR62796.1 768 EIAGLGDSVHRKT----RKYSHGMRQRLAIAQAMLGLPELLVLDEPT 810
                 9999999555555....*****************************9 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.2   1.3e-20   1.4e-17       3     140 ..      65     199 ..      61     220 .. 0.86
   2 ?    2.0   0.0      0.12   1.3e+02     216     242 ..     308     334 ..     276     342 .. 0.83

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 1.3e-20
                    -EEEEEEEEE...TTSSSEEEEEEEESS-CCT.CCCCHTTCHHCCHGGGHHHHHTT-EEEEEE-TTSTTS-S---TTTTT.HHHHHHHHHHHHHH. CS
  Peptidase_S15   3 vrLavdiyrP.etkskeklPvlltrtPYgkndelasdkalaleelelqdkvfvarGYavVvqdvrGtggSeGeftvgdsd.eaedgadvidWlak. 95 
                    v L+++ y+P +++ ++++P++l +  +g ++   ++++ +++e+      ++ +GYav+   +rG+g S G++   ++d e++d+   +dWla+ 
     KIR62796.1  65 VDLDTTFYLPdGASADRRVPAVLLAHGFGGTK---ESVR-SDAEE------LAGQGYAVLAWTARGFGRSGGQIHLDSPDyEVRDAQRLLDWLAAr 150
                    7899*************************543...2232.33333......99***********************955449*************8 PP

                    .....CTTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEEECE-S-TCC CS
  Peptidase_S15  96 .....qpwsnGkVgmtGiSYlGttqllaaatgvpalkaivpeaaisdlyd 140
                             + +Vg++G SY+G ++ll+aa ++++++aivp+ ++ dl +
     KIR62796.1 151 pevrtDAAGDPRVGVVGGSYGGGLALLLAA-QDQRVDAIVPMITWNDLSR 199
                    88874477788*******************.99************99977 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.12
                    HTT-HHHHHCT--S-EEEEEECCSSTT CS
  Peptidase_S15 216 kdrnlsedadkvkapvllvgGwnDwnv 242
                    ++ ++   +d++kap+llv+G +D+ +
     KIR62796.1 308 RRSSPAGVLDRIKAPTLLVQGEADTLF 334
                    5555565679************99665 PP

>> PepX_C  X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.1   2.1e-19   2.2e-16      86     197 ..     476     582 ..     429     592 .. 0.89

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 2.1e-19
      PepX_C  86 adslafttaplaedtelvGapkakLrvssdapdadlsvtLvdvdpdGeatlitkGwlrlsnRasdeepeplePGevydleieLqptayrfpkGhrlrls 184
                  + ++f++apl+e++++ G+p ++Lr++s +  a l+v+L+dvdp+G+a  +  G        +  + +p e G + +++++L+++  r+++Ghrlr++
  KIR62796.1 476 GQHARFESAPLTEAVDVAGSPTVTLRAASATGEAVLFVKLYDVDPQGAA-TLPNGLVAP----VRLTGLPAEMGAAKPVTVTLPAIVRRVEAGHRLRVV 569
                 57899******************************************66.577888877....67899******************************* PP

      PepX_C 185 vsssdfpmilpnp 197
                 v++sd+ ++ p  
  KIR62796.1 570 VATSDQAYTTPAE 582
                 *******998865 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.1   1.1e-15   1.2e-12       6     105 ..      85     189 ..      80     203 .. 0.87
   2 !    5.4   0.0     0.009       9.5     188     213 ..     317     342 ..     308     361 .. 0.80

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 1.1e-15
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpel.......plfllGhSmGGliallyllr 96 
                  +v+l+HG++ + + +   ae+La qG+av+a+ +rG+Grs g + h++s d  v+D++ +++ ++++ + +       ++ ++G S GG +all++++
   KIR62796.1  85 AVLLAHGFGGTKESVRSDAEELAGQGYAVLAWTARGFGRS-GGQIHLDSPDYEVRDAQRLLDWLAARPEVRtdaagdpRVGVVGGSYGGGLALLLAAQ 181
                  79**************************************.99999***************87765544444566776888***************98 PP

  Hydrolase_4  97 ypdkvagli 105
                   ++ v++++
   KIR62796.1 182 DQR-VDAIV 189
                  888.77776 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.009
  Hydrolase_4 188 akitlPllllhGeaDkvvdpeasrel 213
                  ++i++P+ll++GeaD++ + +++ + 
   KIR62796.1 317 DRIKAPTLLVQGEADTLFPLAEADAN 342
                  689*************9987776554 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.1   1.2e-14   1.3e-11       1     106 [.      84     193 ..      84     214 .. 0.92
   2 !    7.6   0.0    0.0025       2.6     206     235 ..     301     344 ..     259     363 .. 0.78

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 1.2e-14
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHH.......HHHCTTSSEEEEEETHHHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldri.......ldalgddkltlvGhSmGGmiala 89 
                    p++++ hG++g+ ++ +    a+ La +g+ v++   rG+g+S   +   ++dy+  + ++ ld++        da gd ++ +vG+S+GG +al 
     KIR62796.1  84 PAVLLAHGFGGTKESVRS--DAEELAGQGYAVLAWTARGFGRSGGQIHLDSPDYEVRDAQRLLDWLaarpevrTDAAGDPRVGVVGGSYGGGLALL 177
                    79*********9999999..999*************************988*************8888899999********************** PP

                    HHHHHGGGEEEEEEESE CS
  Abhydrolase_1  90 yaaeyperVkalvllga 106
                    +aa+ ++rV+a+v + +
     KIR62796.1 178 LAAQ-DQRVDAIVPMIT 193
                    ***9.9******97777 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0025
                    C..............THHHHSEEEEEEETTCSSSCHHHHHHHHH CS
  Abhydrolase_1 206 e..............lknvlaptlvisgtsDplvppkaledlaq 235
                    +              l+ ++aptl+++g+ D l+p  + + +a+
     KIR62796.1 301 QaavdllrrsspagvLDRIKAPTLLVQGEADTLFPLAEADANAR 344
                    244455555666777788999**************988777665 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   2.4e-09   2.6e-06      11     127 ..      77     190 ..      67     196 .. 0.80
   2 !   10.3   0.0   0.00035      0.37     135     184 ..     311     360 ..     292     371 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 2.4e-09
         DLH  11 a....kkpvvvviqeifGvndnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevstkkvgvvGf 105
                 a    ++p+v+ ++ + G ++ ++  +e la +GY++la    +  +  +++   + ++ +   + ++ +++ld l aa   ++++  + + +vgvvG 
  KIR62796.1  77 AsadrRVPAVLLAHGFGGTKESVRSDAEELAGQGYAVLAW---TARG--FGRSGGQIHLDSPDYEVRDAQRLLDWL-AARPEVRTDA-AGDPRVGVVGG 168
                 444569********************************83...3333..345555556665566666556777777.9999999999.7889******* PP

         DLH 106 CmGGalalllaaevpevdaava 127
                   GG lalllaa++++vda v+
  KIR62796.1 169 SYGGGLALLLAAQDQRVDAIVP 190
                 *******************986 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00035
         DLH 135 keleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpg 184
                 ++    ++ikap l + ge+D+ +p +e++  +  ++aa+ ++++ ++ g
  KIR62796.1 311 SPAGVLDRIKAPTLLVQGEADTLFPLAEADANARGIAAAGTPVRVAWFTG 360
                 55666789****************************************96 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   5.5e-07   0.00058       5      86 ..     101     183 ..      97     199 .. 0.82
   2 !   15.8   0.0   6.8e-06    0.0072     127     210 ..     306     388 ..     283     390 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5.5e-07
                   HHHHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GG.....GEEEEEETHHHHHHHHHHHH-G CS
  Peptidase_S9   5 selqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdse.....rlaitGgSyGGyltgaalnqrp 86 
                   s ++ la +Gy+v++   rG g  G + h     +  ++e++D    +++la++  v ++     r+++ GgSyGG l++ +++q +
    KIR62796.1 101 SDAEELAGQGYAVLAWTARGFGRSGGQIHL----DSPDYEVRDAQRLLDWLAARPEVRTDaagdpRVGVVGGSYGGGLALLLAAQDQ 183
                   55666899**************99987665....999**************888854444335559************999998554 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 6.8e-06
                   HHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHH.HHHHHHHHHHHHHCT CS
  Peptidase_S9 127 gykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakv.eelarllaFlkealg 210
                     ++ sp+  ld+  +++p+Ll++G+aD+  p+aea   ++    +g++v++ +f++   g+  pr+   + +  ++++l+++++
    KIR62796.1 306 LLRRSSPAGVLDR--IKAPTLLVQGEADTLFPLAEADANARGIAAAGTPVRVAWFTGGHDGGDGPRNDSdRVKYLTVQWLDHYVK 388
                   4556666666777..9***************************************996669999999997777788999999886 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.4e-05     0.046       2      24 ..     683     705 ..     682     730 .. 0.81
   2 !   20.3   0.0   3.7e-07   0.00039     237     297 ..     783     840 ..     763     845 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.4e-05
      AAA_21   2 nvliGpNgsGKSnLLdaldllar 24 
                  +l GpNg+GK++ L+ l +l +
  KIR62796.1 683 VGLLGPNGAGKTTTLRVLMGLTQ 705
                 689**************977754 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 3.7e-07
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  S G+++ la++ a+l ++    ll++DEp  gL+P  +++  ++l + ++ g  v++++H
  KIR62796.1 783 YSHGMRQRLAIAQAMLGLP---ELLVLDEPTDGLDPPQIAEMRRVLQRYATDGRAVLVSSH 840
                 5889999999999999999...9***********************555555********* PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.3   1.1e-06    0.0012     157     205 ..     139     192 ..      65     201 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHHHTSTTE.....EEEEEEEEEETHHHHHHHHHHHH-SS-SEEEEES CS
        AXE1 157 Davrlveivaslpev.....DeeRvavlGasqGGalalavaalekrikavvady 205
                 Da rl++ +a+ pev      + Rv+v+G+s GG+lal  aa ++r+ a+v+ +
  KIR62796.1 139 DAQRLLDWLAARPEVrtdaaGDPRVGVVGGSYGGGLALLLAAQDQRVDAIVPMI 192
                 44445554444444422111467***************************9976 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.7e-06    0.0082      11     135 ..      70     181 ..      65     185 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.7e-06
                 EEEE.CC.GGTTTEEEEEEE--TTHHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSBB.TTEEETTCCCCCCHCHHHHTHHHHHHHHH CS
    Esterase  11 qvyLPedyspgrkypvvylldGltgwdqnfrakelleslaregeiaeviivvvprggessfysdwdlgarfyenategpgaeayetfltqeLlplldan 109
                  +yLP++ s+ r+ p+v+l +G+ g+ +++r ++    la +g     ++    + g  ++             ++    +++ye   +q+Ll++l+a+
  KIR62796.1  70 TFYLPDGASADRRVPAVLLAHGFGGTKESVRSDAEE--LAGQG----YAVLAWTARGFGRS------------GGQIHLDSPDYEVRDAQRLLDWLAAR 150
                 6999**99999***********88888888776543..44443....34444455555522............3455666999**999*********** PP

                 CSEECCC.....EEEEEETHHHHHHHHHHHC CS
    Esterase 110 frtapdg.....ravaGqSmGGlgALilalk 135
                  ++++d+       v+G S GG  AL+la++
  KIR62796.1 151 PEVRTDAagdprVGVVGGSYGGGLALLLAAQ 181
                 999999999**999**************986 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.4e-05     0.025      49     112 ..     137     197 ..     134     214 .. 0.77
   2 ?    1.5   0.0      0.22   2.3e+02     152     202 ..     301     358 ..     266     362 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.4e-05
                    HHHHHHHHHHHHHTHH.HHT.ETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE-SST CS
  Abhydrolase_3  49 vedalaalrwlaeqaw.elg.adpsrivlaGdSaGGnlaaavalrardegepkvagqvliyPvtdl 112
                    v da + l wla++ + +   a   r+ ++G S GG la+ +a  a+d+   +v ++v +  ++dl
     KIR62796.1 137 VRDAQRLLDWLAARPEvRTDaAGDPRVGVVGGSYGGGLALLLA--AQDQ---RVDAIVPMITWNDL 197
                    679999********96654424455*************99887..6665...67777777777766 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.22
                    STTTSGGGCS-....SST.---EEEEEETT-TT..HHHHHHHHHHHHHTT--EEEEEE CS
  Abhydrolase_3 152 dplaspllaed....lsg.lpptlvvvaefDpl..rdegeayaerlraagveveliey 202
                    + ++  l++++    l++  +ptl+v +e D+l    e+ a a+ ++aag++v++  +
     KIR62796.1 301 QAAVDLLRRSSpagvLDRiKAPTLLVQGEADTLfpLAEADANARGIAAAGTPVRVAWF 358
                    3344444443345554442469**********9444677888999999**99998765 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0     9e-05     0.095      10      50 ..     144     189 ..     140     193 .. 0.80
   2 ?    1.3   0.0      0.25   2.7e+02     112     136 ..     317     341 ..     312     362 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9e-05
                 HHHHHCSTTB--.....SSEEEEEETHHHHHHHHHHHHSSSEEEEE CS
      BAAT_C  10 inyllrhpkvkk.....dkigllGiSkGgelalllasflkkisavv 50 
                 +++l  +p+v       +++g++G S Gg lallla+  + ++a+v
  KIR62796.1 144 LDWLAARPEVRTdaagdPRVGVVGGSYGGGLALLLAAQDQRVDAIV 189
                 6788888888752222268***********************9998 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.25
                 GG--SEEEEEEETT-SSS-HHHHHH CS
      BAAT_C 112 ekakgpillvvgedDknwpSkesae 136
                 +++k+p llv+ge D ++p +e   
  KIR62796.1 317 DRIKAPTLLVQGEADTLFPLAEADA 341
                 799*************999776553 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.8e-05     0.072      11      38 ..     671     699 ..     665     705 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.8e-05
      AAA_23  11 rdqeidFsk.gltlItGpNGaGKTTildA 38 
                 ++++++ ++  ++ + GpNGaGKTT l+ 
  KIR62796.1 671 SNVDFEVHPgQVVGLLGPNGAGKTTTLRV 699
                 45555556646999***********9975 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.16   1.7e+02     101     125 ..     160     184 ..     149     194 .. 0.86
   2 ?    8.5   0.0    0.0014       1.4     158     200 ..     317     362 ..     294     364 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.16
        FSH1 101 gpfdGiiGFSqGaalaallasllee 125
                  p +G++G S G+ la lla++ ++
  KIR62796.1 160 DPRVGVVGGSYGGGLALLLAAQDQR 184
                 6889***************998665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0014
        FSH1 158 dkiqtptLhvlGelDtvvdeerseaLaeafkns...skvlkHpggH 200
                 d+i+ ptL v Ge+Dt+ + +++ a a+ ++      +v ++ ggH
  KIR62796.1 317 DRIKAPTLLVQGEADTLFPLAEADANARGIAAAgtpVRVAWFTGGH 362
                 789***************988666555555554555999******9 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018      0.19      31      75 ..     317     364 ..     287     381 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
  Abhydrolase_4  31 akgaapvLllqnerDpaTPyegakklakalgga...vlvtvegeGHga 75 
                    ++ +ap+Ll+q+e D   P++ a + a+ +  a   v v +  +GH++
     KIR62796.1 317 DRIKAPTLLVQGEADTLFPLAEADANARGIAAAgtpVRVAWFTGGHDG 364
                    34478*************************997788999999999986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00034      0.36      18      47 ..     680     709 ..     674     719 .. 0.81
   2 ?   -3.4   0.0       6.2   6.5e+03      81     114 ..     788     830 ..     767     838 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00034
      AAA_30  18 drvavltGpAGtGKttalkalreaweaagg 47 
                  +v+ l Gp G+GKtt+l++l  + +   g
  KIR62796.1 680 GQVVGLLGPNGAGKTTTLRVLMGLTQPTAG 709
                 568999**************9887776654 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.2
      AAA_30  81 k.....grarlepgtllivDEagmv....dtkqlaallkaaek 114
                 +     ++a l   +ll+ DE         +++++++l++ ++
  KIR62796.1 788 RqrlaiAQAMLGLPELLVLDEPTDGldppQIAEMRRVLQRYAT 830
                 1445565566666788888886544444455566666665555 PP

>> MHYT  Bacterial signalling protein N terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.2      0.97     1e+03      29      46 ..      23      38 ..      16      47 .. 0.53
   2 ?    9.5   1.5     0.001       1.1      25      54 ..     612     641 ..     600     645 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.97
        MHYT 29 alSlliaivasvlAlala 46
                a S  +a+v+ ++A++ a
  KIR62796.1 23 AGS--VAVVLLAAAVLWA 38
                444..3444443333333 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.001
        MHYT  25 paltalSlliaivasvlAlalavrrrdtrl 54 
                 + ++++ ll+ai++ ++A++l++rrr++r+
  KIR62796.1 612 WRWVLAGLLAAIAVGLVAVVLVARRRHRRQ 641
                 45677779******************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (956 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.42
# Mc/sec: 6776.02
//
Query:       KIR62797.1  [L=290]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-16   59.3  14.2    5.1e-16   58.8  14.2    1.2  1  ABC2_membrane_2  ABC-2 family transporter protein
    3.6e-09   36.8   5.6    4.2e-09   36.6   3.5    2.2  2  ABC2_membrane_4  ABC-2 family transporter protein
  ------ inclusion threshold ------
       0.15   11.6   4.1       0.18   11.3   0.0    2.8  3  ABC2_membrane_5  ABC-2 family transporter protein
       0.19   11.9  11.1       0.03   14.4   4.9    2.4  2  Phage_holin_3_3  LydA holin phage, holin superfamily III
        0.7    8.9  15.5       0.15   11.1  11.8    1.7  2  ABC2_membrane_3  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8  14.2   1.4e-19   5.1e-16      11     288 .]      32     288 ..      22     288 .. 0.76

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 1.4e-19
  ABC2_membrane_2  11 lvrsrrfllltvllplidvalaylkdlgsslqseakaikeatlaleyveaasasdeaedtdqdlkvvstimavlipviaalfgadaiagEkerg 104
                      ++r    l+++vllpli  +l +++ +++++  + + +++++  l+++   ++          l  +  ++++l++v+ alf  d +a E   g
       KIR62797.1  32 RRRTQLALGFMVLLPLI--VLVAFQFDSGNDDDGGGGEFSSLADLATSGGLNF---------TLFSLLVSASFLLVVVVALFCGDTVASEASWG 114
                      45555667788888888..5555555555555555555555555555555444.........222256799*********************** PP

  ABC2_membrane_2 105 TlkllLskPvsRdeillgKfiggla.igla.iavallatvll......alaiilalgivlaledllllvvasvlllllv..vflalglllSsva 188
                      +l+ lL+ Pv+R+ +l+ K++  la +gla +++a +a  l+         +  +++ +l+ ++ ll ++a++ +l++v  ++++l++llS+v+
       KIR62797.1 115 SLRYLLAVPVPRARLLAVKLLVALAySGLAlLLLAGTAL-LAgtlrygWEPLRSQVSAQLDPAEGLLRLAAVLGYLAVVllAVAGLAFLLSVVT 207
                      *******************98777625667444444444.4456655523345667777766666666666666666666988*********** PP

  ABC2_membrane_2 189 rssreaaalalglfvvlailvpivlygvaellagpavpqeindflsllsptsayntllneilagsdlnalgstatnllilllllavllvlgyvl 282
                        +  a   a+ l+++ +il +i ++g + +++ p++            +++a   ll+++ +++        +   ++ +++++ +  l++++
       KIR62797.1 208 DAALGAVGGAVLLWILSSILDQITALGGIRAFL-PTH------------YANAWLGLLSTPVQTD------DLVRGCISAIAYATLFWSLAFWR 282
                      ***************************999999.888............999999999*******......588999***************** PP

  ABC2_membrane_2 283 FkrkDl 288
                      F rkD+
       KIR62797.1 283 FTRKDV 288
                      *****7 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   3.5   1.2e-12   4.2e-09      17     161 ..      37     194 ..      23     224 .. 0.63
   2 ?   -0.5   1.5      0.28     1e+03     114     138 ..     201     223 ..     183     284 .. 0.53

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.2e-12
  ABC2_membrane_4  17 llvlaallvpllallyfn...............llgktgldpaefyslsvfgftlllllplilgiiasylifrEeqndtlknLltiPvsrtkll 95 
                      l++  ++l+pl++l++f+                l++ +++    ++l ++ +++ +ll+++++++++  +  E + + l++Ll +Pv r++ll
       KIR62797.1  37 LALGFMVLLPLIVLVAFQfdsgndddggggefsSLADLATSGGLNFTLFSLLVSASFLLVVVVALFCGDTVASEASWGSLRYLLAVPVPRARLL 130
                      44455556677777777744555444444443322222222222222223455677************************************** PP

  ABC2_membrane_4  96 laKlivllllsvllmlvtflitvlfallsgfvgfsvklvlellkkcl..elgllvffavlpiialvll 161
                      + Kl+v l +s l +l+++  ++l+    g  ++ ++++ + +   l    gll ++avl  +a+vll
       KIR62797.1 131 AVKLLVALAYSGLALLLLAGTALLA----GTLRYGWEPLRSQVSAQLdpAEGLLRLAAVLGYLAVVLL 194
                      ******9999888777766555554....555555555444444444334555555555544444433 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.28
  ABC2_membrane_4 114 flitvlfallsgfvgfsvklvlell 138
                      fl++v++   +g vg     +l++l
       KIR62797.1 201 FLLSVVTDAALGAVGGA--VLLWIL 223
                      33333333333333222..222222 PP

>> ABC2_membrane_5  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.8   6.5e+03      19      29 ..      41      51 ..      31      57 .. 0.49
   2 ?   11.3   0.0   5.1e-05      0.18      37     106 ..      88     157 ..      76     167 .. 0.87
   3 ?    0.2   0.0      0.13   4.7e+02      92     136 ..     237     281 ..     229     286 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.8
  ABC2_membrane_5 19 ivllllaiiil 29
                     +++ll++i+++
       KIR62797.1 41 FMVLLPLIVLV 51
                     33333333333 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 5.1e-05
  ABC2_membrane_5  37 llifsilslvisiililttlsyDekskwnkylltLPvtrkeiVksKYlfvlililiailitlllliiavl 106
                      l+  s+l +v++++ +  t++ +   ++ +yll  Pv r  + + K l++l ++ +a+l+++ ++++a+ 
       KIR62797.1  88 LVSASFLLVVVVALFCGDTVASEASWGSLRYLLAVPVPRARLLAVKLLVALAYSGLALLLLAGTALLAGT 157
                      45667888888888899*****************************************999988877655 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.13
  ABC2_membrane_5  92 iailitlllliiavlikgnvtisevllsiliglvialiflaivlP 136
                       a+l t+ +++  +l++ +v++++++   + ++++a++f ++ ++
       KIR62797.1 237 RAFLPTHYANAWLGLLSTPVQTDDLVRGCISAIAYATLFWSLAFW 281
                      556666777777788888899999999999999999999888776 PP

>> Phage_holin_3_3  LydA holin phage, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.4      0.19     7e+02      30      42 ..      92     104 ..      75     122 .. 0.80
   2 ?   14.4   4.9   8.4e-06      0.03       2      77 ..     147     222 ..     146     223 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.19
  Phage_holin_3_3  30 ellleivvSgfvG 42 
                      ++ll +vv++f+G
       KIR62797.1  92 SFLLVVVVALFCG 104
                      5788899999998 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 8.4e-06
  Phage_holin_3_3   2 liivlAllGGlvsylmrakkgrrrfsikellleivvSgfvGllvfllceelglsqlltlaiaglsGylGaralial 77 
                      l ++ All+G+++y ++  +++    +  + + +  +++ G+l+  l++ +gl +ll+++  ++ G++G+++l ++
       KIR62797.1 147 LLAGTALLAGTLRYGWEPLRSQVSAQLDPAEGLLRLAAVLGYLAVVLLAVAGLAFLLSVVTDAALGAVGGAVLLWI 222
                      67899*******************************************************************9987 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   5.1       0.3   1.1e+03     212     259 ..      38      96 ..      36     104 .. 0.55
   2 ?   11.1  11.8   4.3e-05      0.15     163     282 ..      87     226 ..      67     280 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.3
  ABC2_membrane_3 212 gdflvyllqlllilllafgl.................gipfgnlglll.llfllfglayialgyll 259
                      +++++ ll+l++++++ f++                 +           l+f lf+l+++a ++l+
       KIR62797.1  38 ALGFMVLLPLIVLVAFQFDSgndddggggefssladlA-------TSGgLNFTLFSLLVSASFLLV 96 
                      66788888888888887777888888888755555431.......211344444433333333332 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 4.3e-05
  ABC2_membrane_3 163 lvgliliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllill..lafgl..............gipfg.... 236
                      l++ + ++l+ ++a+f    +++E + + +  +l  +v ++ ++ +k+l  ++ + l lll+ +  l+ g+              +++      
       KIR62797.1  87 LLVSASFLLVVVVALFCGDTVASEASWGSLRYLLAVPVPRARLLAVKLLVALAYSGLALLLLAGtaLLAGTlrygweplrsqvsaQLDPAegll 180
                      222333444555566666689***************************9999999999998887545666699999*****9999444444444 PP

  ABC2_membrane_3 237 nlglllllfllfglayialgyllsslfknsetaqilifivilllsg 282
                       l ++l ++ + +la++ l++lls++++ +  a + ++++++l s+
       KIR62797.1 181 RLAAVLGYLAVVLLAVAGLAFLLSVVTDAALGAVGGAVLLWILSSI 226
                      6677888888889999999999999999999999999999995544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 1916.33
//
Query:       KIR62798.1  [L=149]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-11   44.1  11.6    2.3e-11   44.1  11.6    1.5  2  DoxX      DoxX


Domain annotation for each model (and alignments):
>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1  11.6   1.3e-15   2.3e-11       2      84 ..      11      90 ..      10      91 .. 0.92
   2 ?   -2.8   0.1      0.55   9.9e+03      67      80 ..     104     117 ..     103     120 .. 0.71

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 1.3e-15
        DoxX  2 llllRlllgvlfiahGlqkltgfglegtaaslaalglpppellaylaalvElvgglllllGlltRlaAlalavtllvatltvh 84
                l l R+++g+lf+ hGl++l+g  + g+ +  +a++l   ++  ++aal++ v+g l+l Gl+tR aAl+    ++ a ++vh
  KIR62798.1 11 LSLFRMVIGLLFLFHGLSSLFG-VFGGARGTGQAVPL--GTWPGWYAALIQAVCGALVLAGLFTRPAALLASGSMAYAYFVVH 90
                6689*****************7.57777777778888..99*****************************************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.55
        DoxX  67 laAlalavtllvat 80 
                 l+Al+   ++l+a+
  KIR62798.1 104 LSALFCWSFVLIAV 117
                 56777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1057.42
//
Query:       KIR62799.1  [L=129]
Description: hypothetical protein TK50_17760 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00094   19.5   0.0     0.0014   18.9   0.0    1.3  1  DUF4878          Domain of unknown function (DUF4878)
     0.0083   16.3   0.4      0.012   15.7   0.3    1.4  1  Phage_holin_7_1  Mycobacterial 2 TMS Phage Holin (M2 Hol) Fam
  ------ inclusion threshold ------
      0.075   11.7   0.0      0.084   11.5   0.0    1.0  1  DUF3418          Domain of unknown function (DUF3418)
        0.3   11.5   1.6       0.32   11.4   0.1    1.8  2  Arm-DNA-bind_3   Arm DNA-binding domain


Domain annotation for each model (and alignments):
>> DUF4878  Domain of unknown function (DUF4878)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   3.1e-07    0.0014       7     112 .]      33     126 ..      28     126 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3.1e-07
     DUF4878   7 qtpeeavknFleavkeGdvedaikyltestreedalaeklkgkfkelkakaekkkekqgnlkeveikdeeesgdtAvvtVkvtlkdGkekkeeieliKe 105
                 + + +a+ ++l +v  Gd  +a   l+++ r++  + e++ ++       a   +  ++ ++  e+ +++ s  +A vtV   ++ G e+   + l+ e
  KIR62799.1  33 APARDAATAYLDDVRAGDHPAAYARLCDELRSQVTEEEFARAR-------AAEPALGNYRVTATEVSSSTGSQSRAEVTV---TAAGREQ--VLILVEE 119
                 4689******************************999994444.......556888999999******************...6777776..5778999 PP

     DUF4878 106 dgkWkvs 112
                 +g W v+
  KIR62799.1 120 GGGWRVC 126
                 9999986 PP

>> Phage_holin_7_1  Mycobacterial 2 TMS Phage Holin (M2 Hol) Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.3   2.8e-06     0.012      37      94 ..       3      58 ..       1      93 [. 0.69

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.8e-06
  Phage_holin_7_1 37 ivvavvsvlvaaalavaavvl.rkqikdattaavdkvvkslediqavlaataqaaedel 94
                     iv+avv++l +a+  +a++v   + +++at+ a d ++  l+d++a       aa ++l
       KIR62799.1  3 IVAAVVALLCCAGAFTASGVWfFRTVQGATAPARDAATAYLDDVRAGD---HPAAYARL 58
                     899******999999988875156677777777899999999976643...33444444 PP

>> DUF3418  Domain of unknown function (DUF3418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.9e-05     0.084     400     479 ..      35     117 ..      18     121 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.9e-05
     DUF3418 400 lddliaaaldrllaeelprdeaeFealleevraelaeeaqevvrlveeilaaaaevekklkkakslaa......ladireqleeLv 479
                 ++d+ +a ld++ a      +a++++l++e+r++++ee  + +r++e +l +++ +++++++++  ++      +a  req+  Lv
  KIR62799.1  35 ARDAATAYLDDVRAG---DHPAAYARLCDELRSQVTEEEFARARAAEPALGNYRVTATEVSSSTGSQSraevtvTAAGREQVLILV 117
                 445555555665543...789***************************************77766332233444555666665555 PP

>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   7.1e-05      0.32      32      70 ..      22      55 ..      11      58 .. 0.78
   2 ?   -1.5   0.3      0.77   3.4e+03      39      39 ..      81      81 ..      62     111 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.1e-05
  Arm-DNA-bind_3 32 tfvlryrlGrypavslaeARkkarelraliaqGiDPaee 70
                    ++++r    +  +   a AR++a+++++++++G  Pa+ 
      KIR62799.1 22 VWFFR----TV-QGATAPARDAATAYLDDVRAGDHPAAY 55
                    56666....22.135688***************99*986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.77
  Arm-DNA-bind_3 39 l 39
                    l
      KIR62799.1 81 L 81
                    2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1043.56
//
Query:       KIR62800.1  [L=428]
Description: threonine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-60  205.0   2.9      2e-60  204.7   2.9    1.1  1  PALP      Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
       0.11   12.4   0.5       0.25   11.3   0.5    1.5  1  NinF      NinF protein


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.7   2.9   2.3e-64     2e-60       5     294 .]      89     395 ..      85     395 .. 0.96

  Alignments for each domain:
  == domain 1  score: 204.7 bits;  conditional E-value: 2.3e-64
                 SSS--EEEECCTCCCCCCE..EEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT CS
        PALP   5 igpTPlvrlprlskelgvp..lflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllG 101
                  g TPlv++ +l++elg+   l++K++s npt SfKdR ++ +l++++   g ++ ++as+GN + ++Aa aa++G ++++++p+d  p+kv  +  +G
  KIR62800.1  89 PGLTPLVAAGNLAAELGITapLWVKDDSANPTHSFKDRVVSVALTAARAL-GFTRFACASTGNLANSVAAHAARAGAPSIVFIPSDLEPGKVVTTAVYG 186
                 689*******************************************9999.************************************************ PP

                 -EEEEECCHHHHHHHHHHHHHHH..STTCEE--TTTSHHHHHHHHTHHHHHHHHTT.TTEEEEEEE-SSSHHHHHHHHHHHH.......HSTT..-EEE CS
        PALP 102 aevvevggdydeavaaaaelaae..gegaylvsqfdnptviegygtiglEileqlg.gkpdavvvpvGgGgliaGiaaglke.......rrpd..vrvi 188
                  e+v ++g+yd+  +++ el +    e+  +v+    p+  eg +t+g+E++eqlg + p  vv p+ +G l++ i +++ e       + p    +v+
  KIR62800.1 187 GELVAIDGSYDDVNRLCGELVETdeFEDTAFVNVNVRPYYAEGSKTLGYEVAEQLGwRIPAQVVIPMASGELLTKIDKAFSElveiglvEAPAggWKVF 285
                 **********************99999999999999***********************************************999988666688**** PP

                 EEEECTTCGGTTCCS..S.SS..B..SSS.CCSTCS..CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHCCT CS
        PALP 189 gvepegsdalarslragrrvtvpvs.dtiadglavg..spselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal.klreagelk 283
                 g++++g++++a++l+a   + +pv+ + ia++l++g  +++ +a+e+++r+++ +  v+d+e+ +++rllar++gi++e ++++ +a+l kl+e g+l+
  KIR62800.1 286 GAQSAGCNPIAAALHADTDTITPVKpTGIAKSLNIGdpAAGLYALEAVRRTGGWMEYVDDDEIRAGIRLLARTTGIFAETAGGVTVAVLrKLVESGRLD 384
                 **************999888888886779********************************************************************** PP

                 TCEEEEEEE-B CS
        PALP 284 egdrvvviltg 294
                 + + +vv  tg
  KIR62800.1 385 PTAETVVFNTG 395
                 **999998887 PP

>> NinF  NinF protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5   2.7e-05      0.25      14      39 ..      15      41 ..      12      49 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.7e-05
        NinF 14 sveRaL.CanCskkLevdevhvCeeCv 39
                s +RaL C  Cs +      h C eC 
  KIR62800.1 15 SPARALvCRACSARYPLAAQHACYECF 41
                679***********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3179.72
//
Query:       KIR62801.1  [L=339]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-12   47.3   0.0    6.5e-09   36.0   0.0    2.4  2  Acetyltransf_1   Acetyltransferase (GNAT) family
      1e-06   29.1   0.0    6.2e-05   23.3   0.0    2.3  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
    6.2e-05   22.9   0.0     0.0015   18.5   0.0    2.2  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0042   17.2   0.1       0.14   12.3   0.0    2.5  2  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
      0.011   15.4   0.1        2.6    7.7   0.0    2.6  2  Acetyltransf_8   Acetyltransferase (GNAT) domain
      0.018   14.2   0.0      0.038   13.1   0.0    1.5  1  PBP_like         PBP superfamily domain
      0.028   14.4   0.4       0.74    9.8   0.1    2.6  3  FR47             FR47-like protein
      0.098   12.7   0.1       0.27   11.3   0.1    1.7  1  Acetyltransf_9   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   2.9e-12   6.5e-09      11      99 ..      33     119 ..      23     129 .. 0.73
   2 !    8.8   0.0    0.0008       1.8      34     117 .]     242     326 ..     209     326 .. 0.69

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 2.9e-12
                     HTHHHHHHHHHHH..HHHHHHSTTC.EEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEE CS
  Acetyltransf_1  11 sffppnedaseee..feesfsleae.gllv.aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivl 99 
                     +f+ p ++  +e+  +++    + +   ++ a+ dg ++G++ l   +  ++   ++ +l+V+p++r++G+G+aL  + +e +re+g k++ +
      KIR62801.1  33 DFP-PLCRQRFEAavRHPM---PGNvPVWAlARLDGAPAGYLALDLPQL-DNTDNATVDLFVHPAHRRRGVGRALHAHGVELLRERGRKRV-I 119
                     433.344444444344444...444666668***********9999999.55555666****************************99884.3 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0008
                     EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT..TESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  34 gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree..gikkivlaveedndaairlYeklGF 117
                     ++ v    g+l+++ ++   p+  + +a+     V+p++rg+ lG +   + +++a+ +  g++++     + n+ +i+  e lGF
      KIR62801.1 242 HGAVHAASGRLVAWTTIDVGPN-VPWHAWQQTTIVDPAHRGHRLGLLVKVENLRYALAHepGLRAVDTFNAQANTYMIAINEALGF 326
                     4444557799999999999999.78999*****************88844444444444467777755555667777777766666 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.8e-08   6.2e-05       8      48 ..      60     105 ..      52     128 .. 0.72
   2 ?    3.4   0.0     0.047     1e+02      30      42 ..     273     285 ..     241     327 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.8e-08
                     EEETTEEEEEEEEEEES....TCTEE....EEE-GGGTTSSHHHHHHHH CS
  Acetyltransf_7   8 aeddgkivGfialslld....aeitr....laVdpeyrgkGiGraLlea 48 
                     a+ dg + G++al l +    +   +    l+V+p++r++G+GraL ++
      KIR62801.1  60 ARLDGAPAGYLALDLPQldntD---NatvdLFVHPAHRRRGVGRALHAH 105
                     5666888898887777776542...24457****************887 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.047
                     EEE-GGGTTSSHH CS
  Acetyltransf_7  30 laVdpeyrgkGiG 42 
                       Vdp++rg+ +G
      KIR62801.1 273 TIVDPAHRGHRLG 285
                     67********998 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   6.6e-07    0.0015      39      86 ..      63     116 ..      39     127 .. 0.73
   2 ?    2.3   0.0     0.069   1.5e+02      58     111 ..     274     331 ..     242     336 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.6e-07
  Acetyltransf_10  39 ggkivGvi.....el.rdgshisllfVdpeyrgqGigkaLleaveeeaekdgik 86 
                      +g ++G++     +l  +++    lfV+p++r++G+g+aL  +  e ++++g k
       KIR62801.1  63 DGAPAGYLaldlpQLdNTDNATVDLFVHPAHRRRGVGRALHAHGVELLRERGRK 116
                      566666664433344334448889*****************9999999777655 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.069
  Acetyltransf_10  58 fVdpeyrgqGigkaLleaveeeaekdgikl....eltvnaspyavpfYeklGFkavge 111
                      +Vdp++rg  +g     + +++a  ++++l    +++++a++y +++ e lGF++v++
       KIR62801.1 274 IVDPAHRGHRLGLLVKVENLRYALAHEPGLravdTFNAQANTYMIAINEALGFRPVDA 331
                      577777777777555555555555555554445667777888***********99975 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   6.4e-05      0.14      30      59 ..      87     116 ..      60     122 .. 0.85
   2 ?    2.0   0.0       0.1   2.3e+02      29      53 ..     272     296 ..     252     306 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.4e-05
  Acetyltransf_CG  30 TeVpeelrGkGiAkkLvkaalddareeglk 59 
                       +V++++r++G++++L  + ++  re+g k
       KIR62801.1  87 LFVHPAHRRRGVGRALHAHGVELLRERGRK 116
                      69*************************987 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.1
  Acetyltransf_CG  29 hTeVpeelrGkGiAkkLvkaaldda 53 
                       T+V++++rG+ ++     + l +a
       KIR62801.1 272 TTIVDPAHRGHRLGLLVKVENLRYA 296
                      69********988865555555555 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0095        21      48     111 ..      59     113 ..      47     123 .. 0.76
   2 ?    7.7   0.0    0.0012       2.6      87     143 ..     275     332 ..     268     333 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0095
                     EEEETTEEEEEEEEEEGGGCGGGGCS---TT-EEEEEEESSHHHCTTTCHHHHHHHHHHHHHCC CS
  Acetyltransf_8  48 iglldgepvgyfeiYwakedelaeyydaepgdrGiHlligeaeargkglttallralvhylfad 111
                     +++ldg p+gy+ +  ++ d        +     ++l++  +++r++g+++al  + v++l ++
      KIR62801.1  59 LARLDGAPAGYLALDLPQLD--------NTDNATVDLFVH-PAHRRRGVGRALHAHGVELLRER 113
                     899***********999999........556666777875.56667888888877777766555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0012
                     SSHHHCTTTCHHHHHHHHHHHHHC.CTT--EEEE--BTT-HHHHHHHHHTT-EEEEEE CS
  Acetyltransf_8  87 geaeargkglttallralvhylfa.dprtrrvvvEPdvrNerairllekaGfekekev 143
                      ++++rg+ l+  +  + ++y++a +p+ r v +     N+ +i+++e++Gf++++ +
      KIR62801.1 275 VDPAHRGHRLGLLVKVENLRYALAhEPGLRAVDTFNAQANTYMIAINEALGFRPVDAW 332
                     578899999999999999999997477*******9******************98765 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.7e-05     0.038     142     176 ..      13      47 ..      11      51 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.7e-05
                 CETTCCECCCGG-HCCCCCCECTTCE-EEEEEEEE CS
    PBP_like 142 agradvgvgieavaeelkgldfvplaeerydlvvr 176
                 +g +d+++gi+a+a++++  df pl ++r++ +vr
  KIR62801.1  13 QGAVDAAYGIRAAADQADVPDFPPLCRQRFEAAVR 47 
                 899**************999**********99987 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00033      0.74      27      57 ..      87     117 ..      77     125 .. 0.87
   2 ?   -2.8   0.0       2.8   6.4e+03       3      16 ..     243     256 ..     242     261 .. 0.84
   3 ?    1.7   0.0      0.11   2.5e+02      29      80 ..     275     329 ..     270     335 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00033
                 EEE-GGG-SSSHHHHHHHHHHHHHHHS-S-E CS
        FR47  27 lqvlpehrrrGlgsrlvkalakeiaergktv 57 
                 l v+p hrrrG g+ l +   + ++erg + 
  KIR62801.1  87 LFVHPAHRRRGVGRALHAHGVELLRERGRKR 117
                 789**************99999999999765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.8
                 EEEETTT--EEEEE CS
        FR47   3 Glyrkelgelaawi 16 
                 G ++ + g+l+aw 
  KIR62801.1 243 GAVHAASGRLVAWT 256
                 78888999999996 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.11
                 E-GGG-SSSHHHHH.HHHHHHHHHH.S-S-EEE.EEETT-HHHHHHHHHHT-EEE CS
        FR47  29 vlpehrrrGlgsrl.vkalakeiae.rgktvll.vvvasNtpsirlyeklGfeki 80 
                 v+p hr+  lg ++ v++l +++a+  g  ++    +++Nt  i++ e+lGf+  
  KIR62801.1 275 VDPAHRGHRLGLLVkVENLRYALAHePGLRAVDtFNAQANTYMIAINEALGFRPV 329
                 7888999999988878888888888556555540445679999999999999865 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00012      0.27      77     111 ..      85     119 ..      82     125 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                     EEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEE CS
  Acetyltransf_9  77 tgVavapehrgrgvlskLlaraleemreegqplsl 111
                     ++  v+p hr+rgv ++L a+ +e +re+g + ++
      KIR62801.1  85 VDLFVHPAHRRRGVGRALHAHGVELLRERGRKRVI 119
                     56789************************977655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2733.10
//
Query:       KIR62802.1  [L=561]
Description: aldehyde dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-39  133.6   1.5    9.8e-39  133.1   1.5    1.1  1  Aldedh      Aldehyde dehydrogenase family
     0.0097   15.9   2.7        1.7    8.7   0.1    3.4  4  ADH_zinc_N  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.1   1.5   1.1e-42   9.8e-39      31     426 ..      96     515 ..      92     545 .. 0.80

  Alignments for each domain:
  == domain 1  score: 133.1 bits;  conditional E-value: 1.1e-42
                 HHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHH.....HHHHHHHHHHHHHHHHHHHHHSEEEEEE.C......TT CS
      Aldedh  31 vdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaea.....raeveeaidvlryyaelaeklegevlps.s......eg 117
                 +d+ vaaA +a +aw++  ++ Ra i  ++ d l+++  ela++ +   G+ +  a     ++ +++a++ + y+ +++++  g++ +  +       +
  KIR62802.1  96 ADELVAAASAALPAWRDAGPQARAGICLEILDRLHKHVFELANAVQFTSGQAFVMAfqaggAHALDRALEAVAYAYAEMTRHPGTAGWEkAagkgdpLR 194
                 6899**********************************************9876652222134899********9999999888775552356666445 PP

                 EEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHH....HHHHHTTS-TTSEEE--SS.TCCHHHHHHH-TTESEEEE CS
      Aldedh 118 klalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsallla....elfeeaglPkgvlnvvtgs.gsevgealvehpevdkvsf 211
                 ++ +++  P Gv ++I    fP   +   l + l++GN vv+KP ++++l  ++ +    e+++eag++++++ + +   g++++ +l+ hp v+ v f
  KIR62802.1 195 MTKTFHVVPRGVALVIGCNTFPTWNSYPGLFASLVTGNPVVVKPHPRAVLPLAITVkyarEVLAEAGFDPNLVLLAPEApGEKLATTLALHPAVKIVDF 293
                 56666677****************************************987776661112456667*******9997666******************* PP

                 ES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEH.........HHHHHHHHHHHHHHHT--BS-T CS
      Aldedh 212 tGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqe.........siydefveklveaakklkvgdp 301
                 tGste g  + ++a +    v  E  G n++++ +  D+    +++ + +++++GQ C++ + +l++          + +de+ + +++a+ kl+  dp
  KIR62802.1 294 TGSTEYGDWLEANARQ--ATVYTEKAGLNTVVIDSTDDFAGLCRNLGFTLTLYSGQMCTTSQNILIPAggidtdqghKSFDEVAAGIAAAVGKLTA-DP 389
                 **********999995..79**********************************************862222222224567789999999999977.66 PP

                 TSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSS...SEES CS
      Aldedh 302 ldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdt...eyGL 397
                  +     G++++   le++++++    + ga +l   + e++     ++ +Pt+++    d + +  E FGP+  vi  ++ ++ +e+  +t     +L
  KIR62802.1 390 ARGVELTGAIVNDGVLERLDEVT----KVGAAVLESRTVEHPAFPGAVVRTPTIVKLAAADTATYGREWFGPISFVIATDSTAHSLELLRATvgeSGAL 484
                 56566679999999888888875....556666665546677777778889*****************************999887777766332689* PP

                 EEEEE-SBHHHHHHH.HHHS-SSE.EEESSS CS
      Aldedh 398 aagvftkdleraerv.aerleaGn.vyiNds 426
                 +a+v+++d++ +  + a+++++G  + +N +
  KIR62802.1 485 TAAVYSTDPAVLDAAeAAAIDVGVhLSCNLT 515
                 ********99888763455677742344444 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.39   3.5e+03      52      81 ..     141     169 ..     122     170 .. 0.77
   2 !    5.0   0.0    0.0026        23      11      48 ..     315     353 ..     310     376 .. 0.84
   3 ?   -1.1   0.1      0.19   1.7e+03       2      37 ..     382     418 ..     381     426 .. 0.78
   4 !    8.7   0.1   0.00019       1.7      17      84 ..     461     532 ..     454     557 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.39
                 HHTTTSSEEEEEESSCSHHHHHHHHHCEEE CS
  ADH_zinc_N  52 eltggegvdvvfecvGsgatleaalkllkp 81 
                 ++t g+ +  +f + G  ++l++al+++++
  KIR62802.1 141 QFTSGQAFVMAFQAGG-AHALDRALEAVAY 169
                 4667888888999999.9999999998875 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0026
                 HHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHH CS
  ADH_zinc_N  11 kalGaeviavdsseeklelakklGadevinykea.dlve 48 
                   +G +++++ds+++ + l++ lG + ++ + ++ + ++
  KIR62802.1 315 EKAGLNTVVIDSTDDFAGLCRNLGFTLTLYSGQMcTTSQ 353
                 56899*********************9999866655555 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESE CS
  ADH_zinc_N   2 vGlaavqlAkalGa.eviavdsseeklelakklGade 37 
                 vG ++   A+       i+ d+  e+l+ + k Ga +
  KIR62802.1 382 VGKLTADPARGVELtGAIVNDGVLERLDEVTKVGAAV 418
                 67777777777777778888889999*******9875 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.00019
                 EEEEESSHHHHHHHHH.TTESEEEET...TTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEE CS
  ADH_zinc_N  17 viavdsseeklelakk.lGadeviny...kea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGr 84 
                 via+ds+++ lel++   G   ++++   +++  + ++ +++  + gv+++ + +G g  ++++ ++ + +G 
  KIR62802.1 461 VIATDSTAHSLELLRAtVGESGALTAavySTDpAVLDAAEAAAIDVGVHLSCNLTG-GVFVNQSAAFSDFHGS 532
                 9**************9666666666655555556666666666699**********.*******999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3777.74
//
Query:       KIR62803.1  [L=167]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-13   49.5   0.0    5.2e-13   49.2   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
      8e-05   22.5   0.0    0.00012   22.0   0.0    1.2  1  FR47             FR47-like protein
    0.00013   22.3   0.0    0.00018   21.9   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00098   19.1   0.0     0.0015   18.5   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0046   16.6   0.1      0.011   15.5   0.0    1.6  2  Acetyltransf_8   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.081   13.6   0.0      0.091   13.4   0.0    1.2  1  Acetyltransf_3   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   1.8e-16   5.2e-13      41     117 .]      63     143 ..      21     143 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 1.8e-16
                     T.....TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  41 d.....geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                           g+l+G+++++   d ++g ++++ ++V p++rg Gl  aL+e ++ + re g  +++l+v + nd+a+r Y++lGF
      KIR62803.1  63 RpggpaGRLLGHAGGTVSAD-EPGLTVVYAVYVTPARRGTGLLAALIEGVAAWSRECGRPELMLEVVVGNDRAHRAYRRLGF 143
                     1555669*************.89******************************************************88**9 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   4.1e-08   0.00012      22      78 ..      87     144 ..      76     150 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 4.1e-08
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHH.S-S-EEEEEETT-HHHHHHHHHHT-E CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiae.rgktvllvvvasNtpsirlyeklGfe 78 
                 + ++a++v p  r+ Gl   l++ +a+  +e    +++l vv +N+++ r y +lGf 
  KIR62803.1  87 TVVYAVYVTPARRGTGLLAALIEGVAAWSREcGRPELMLEVVVGNDRAHRAYRRLGFV 144
                 889****************************444689999*****************6 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   5.9e-08   0.00018      16      75 ..      73     144 ..      48     145 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 5.9e-08
                     EEEEEEEES.....TCTEEEEE-GGGTTSSHHHHHHH..HTT....SEEE..EE.EEEE.THHHHHHHHHHTTEE CS
  Acetyltransf_7  16 Gfialslld.....aeitrlaVdpeyrgkGiGraLle..aae....kgii..le.qlel.naekaikfYeklGFe 75 
                     G ++ ++++     +    ++V p+ rg G+  aL+e  a +     g +  l  ++ + n+ +a++ Y++lGF+
      KIR62803.1  73 GHAGGTVSAdepglTVVYAVYVTPARRGTGLLAALIEgvA-AwsreCG-RpeLMlEVVVgND-RAHRAYRRLGFV 144
                     4444444444444444444******************843.2332333.1332323344444.9**********8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.9e-07    0.0015      52     111 ..      84     148 ..      67     151 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.9e-07
  Acetyltransf_10  52 s...hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkavge 111
                           ++ ++V p+ rg+G+ +aL+e v +  +++g  +  l+v   +  a + Y++lGF+++g 
       KIR62803.1  84 PgltVVYAVYVTPARRGTGLLAALIEGVAAWSRECGRPElMLEVVVGNdRAHRAYRRLGFVDTGV 148
                      247789999***********************99999888999999998************9975 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.96   2.9e+03      75      75 ..      41      41 ..      14      64 .. 0.51
   2 !   15.5   0.0   3.6e-06     0.011      89     140 ..      96     146 ..      78     149 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.96
                    - CS
  Acetyltransf_8 75 a 75
                    a
      KIR62803.1 41 A 41
                    1 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 3.6e-06
                     HHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEE CS
  Acetyltransf_8  89 aeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfeke 140
                     +++rg gl +al++ ++++  +  +    ++E  v N ra+r+++++Gf+  
      KIR62803.1  96 PARRGTGLLAALIEGVAAWSREC-GRPELMLEVVVGNDRAHRAYRRLGFVDT 146
                     67889999999999999886554.8999*********************976 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     3e-05     0.091      66     137 ..      72     143 ..       9     144 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3e-05
  Acetyltransf_3  66 iGsvglrdleeedeeaelgymla..psfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     +G +g +   +e++ + + y +   p+ +g G+     +++  +  +e g ++l+ ++   N +  r +++lGf
      KIR62803.1  72 LGHAGGTVSADEPG-LTVVYAVYvtPARRGTGLLAALIEGVAAWS-RECGRPELMLEVVVGNDRAHRAYRRLGF 143
                     55554444444444.444444433277899999988888887777.9999***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1188.41
//
Query:       KIR62804.1  [L=67]
Description: cold-shock protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-30  102.4   1.0    9.4e-30  102.3   1.0    1.0  1  CSD       'Cold-shock' DNA-binding domain
      0.003   17.2   1.6     0.0053   16.4   1.6    1.6  1  OB_RNB    Ribonuclease B OB domain
  ------ inclusion threshold ------
      0.025   14.9   0.0       0.03   14.6   0.0    1.2  1  S1        S1 RNA binding domain


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   1.0   1.6e-33   9.4e-30       2      65 ..       3      65 ..       2      66 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 1.6e-33
                EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEEE CS
         CSD  2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVtk 65
                +GtVkwfna+kg+GFI+ + g+ dvFvH+sai++dg++ L++gq+VeFe+ +g+kgp+A+ V+ 
  KIR62804.1  3 QGTVKWFNAEKGYGFIAVDGGQ-DVFVHFSAIEMDGYKALDDGQRVEFEIAQGQKGPQAERVRV 65
                8****************99999.**************************************985 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.6   8.8e-07    0.0053       7      30 ..      12      34 ..       4      67 .] 0.70

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.8e-07
                SSS-EEEEECT.TEEEEE-HHHHT CS
      OB_RNB  7 kkGFGFlipdegkeDifippeqmk 30
                +kG+GF+ +d+ ++D+f++ + ++
  KIR62804.1 12 EKGYGFIAVDG-GQDVFVHFSAIE 34
                79********6.******877654 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   5.1e-06      0.03      20      61 ..      16      52 ..       3      59 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.1e-06
                EEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEE CS
          S1 20 afVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvl 61
                 f+ +++g+++fv+ s +++d     +++ l  G++v++++ 
  KIR62804.1 16 GFIAVDGGQDVFVHFSAIEMD-----GYKALDDGQRVEFEIA 52
                4788889************99.....9999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.34s 00:00:00.87 Elapsed: 00:00:00.55
# Mc/sec: 368.63
//
Query:       KIR62805.1  [L=540]
Description: molecular chaperone GroEL [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-96  322.3  13.5    6.5e-96  321.9  13.5    1.2  1  Cpn60_TCP1     TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.088   12.9   0.1        0.2   11.8   0.1    1.5  1  Kinesin_assoc  Kinesin-associated


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.9  13.5  7.2e-100   6.5e-96       1     491 []      22     523 ..      22     523 .. 0.93

  Alignments for each domain:
  == domain 1  score: 321.9 bits;  conditional E-value: 7.2e-100
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHH....HHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPa....akllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegye 95 
                 lad+vk+tlGPkG++++l++k g++++TnDG++i+ke+e+e+P+    a+l+ e+a+++d+ +GDGTtt+++La++L++e+ + +aag++p ++++g+e
  KIR62805.1  22 LADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYekigAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPMALKRGIE 120
                 79************************************************************************************************* PP

                 HHHHHHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCSEECSCCCEECCCCEECEC..TTSEEESEEEESS--SS CS
  Cpn60_TCP1  96 kalekaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAvklieenekeldlgrikvvkieggsl..edselveGlvldkgvls 192
                  a++ + e+L++ a++++++    e++++ a++s++          +++++++A+          ++g+ +v+++e+++    + el eG+ +dkg++s
  KIR62805.1 121 AAVASVSEELSKLAKDVETK----EQIASTASISAGDS-------TVGEIIAEAM---------DKVGKEGVITVEESNTfgLELELTEGMRFDKGYIS 199
                 *************9999887....99999999988766.......8*********.........89*************955566666*********** PP

                 T.......TSSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S-... CS
  Cpn60_TCP1 193 p.......dmpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrv... 281
                 +        m+  ++++++l+ + +++  k+                        l+++lek+++sg+++++++++++ +al +l+ n++ ++ +    
  KIR62805.1 200 AyfmtdpeRMEAVFDEPYILIANSKISSVKD------------------------LLPILEKVMQSGKPLLIIAEDVEGEALPTLVVNKVKGVFKSaav 274
                 **999888888888*****************........................****************************************99** PP

                 ........-HHHHHHHHHHHT--EBSCGGGGGCGC.....-EEEEEEEECCETTCCEEEEE...................................CES CS
  Cpn60_TCP1 282 ........kkkdlerlakatGatavssledltpee.....lGtakkveeekigsekttiie...................................evk 332
                         +k++l ++a++tG++++s+   l+ e+     lG a+kv    +++++tti++                                     +
  KIR62805.1 275 kapgfgdrRKAMLTDIAILTGGQVISEELGLKLEAagldmLGRARKV---VVTKDETTIVDgagdaeqiqgrvnqiraeidksdsdydreklqerlAKL 370
                 ****************************777766667777******9...9**********88888888887777777777666666666555555339 PP

                 SSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHH CS
  Cpn60_TCP1 333 sgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyaksvsgeeqlaieafakALevipktLaeNaGldpievlakl 431
                  g++a+i++++at+++l+e++ +iedA++ +k+a+e e++vpGGG++++++ k   + +  ++g+e+ ++++++ AL ++++++a NaGl++  v++++
  KIR62805.1 371 AGGVAVIKVGAATEVELKERKHRIEDAVRNAKAAVE-EGIVPGGGVALVQAGKTAFD-KLDLTGDEATGAQIVKIALDAPLRQIAVNAGLEGGVVVERV 467
                 ************************************.**************999844.4459************************************* PP

                 HHHHHTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEXXXX CS
  Cpn60_TCP1 432 raahnkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLrideiikakk 491
                 r+  ++    +g++++sge++dl++ag++Dp+kv+r+al++A+++a+++L++++++ +k+
  KIR62805.1 468 RN-LDA---GHGLNAASGEYVDLLAAGIIDPAKVTRSALQNASSIAALFLTTEAVVADKP 523
                 *9.333...66*********************************************9985 PP

>> Kinesin_assoc  Kinesin-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   2.2e-05       0.2       5     132 ..      62     196 ..      59     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.2e-05
  Kinesin_assoc   5 edPnaklvrelkeeverlkdlllaqglediidseaeplkeglvll..aseraknlsavtaavaglspssslsalssraesvssleerivfspas.. 96 
                    edP +k+  el +ev++  d ++  g  + +  +++ ++egl  +   +++ + ++   aava++s + s+ a++ ++++   ++ +i   ++   
     KIR62805.1  62 EDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVaaGANPMALKRGIEAAVASVSEELSKLAKDVETKEQIASTASISAGDSTvg 157
                    9*************************9888877778888876665213444455555667777777777777777766655555666655555577 PP

  Kinesin_assoc  97 ...eeaierlketekiiaelnetWeeklrkteairlere 132
                        ea++++ +   i  e  +t+   l  te +r+++ 
     KIR62805.1 158 eiiAEAMDKVGKEGVITVEESNTFGLELELTEGMRFDKG 196
                    6667888888888889999999**********9999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       935  (0.0521501); expected 358.6 (0.02)
Passed bias filter:                      652  (0.0363657); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.35s 00:00:01.14 Elapsed: 00:00:00.55
# Mc/sec: 2969.63
//
Query:       KIR62806.1  [L=610]
Description: FAD-dependent oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-51  174.8   8.3    5.4e-51  174.2   7.8    1.5  1  DAO            FAD dependent oxidoreductase
    5.1e-33  113.6   0.2    5.1e-33  113.6   0.2    1.8  2  DAO_C          C-terminal domain of alpha-glycerophosphate ox
    2.8e-12   46.4   9.3    7.1e-06   25.4   0.5    2.3  2  FAD_binding_2  FAD binding domain
    5.8e-08   32.5   1.4      3e-07   30.2   0.6    2.0  2  FAD_oxidored   FAD dependent oxidoreductase
    4.3e-06   26.2   1.0    3.5e-05   23.2   1.0    2.1  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    8.1e-06   25.3   2.9    0.00011   21.6   2.9    2.3  1  FAD_binding_3  FAD binding domain
    0.00031   19.9   1.4    0.00055   19.1   1.4    1.3  1  GIDA           Glucose inhibited division protein A
     0.0016   18.6   2.1      0.004   17.3   0.8    2.4  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0027   18.2   1.1      0.025   15.1   0.2    2.6  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.011   15.7   0.1      0.023   14.6   0.1    1.6  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
      0.017   13.8   1.8      0.027   13.2   1.8    1.2  1  HI0933_like    HI0933-like protein
      0.019   14.3   0.7      0.044   13.1   0.1    1.8  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
       0.05   12.8   0.1       0.11   11.7   0.1    1.5  1  Thi4           Thi4 family
       0.15   11.3   0.0       0.41    9.8   0.0    1.6  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.2   7.8   4.2e-54   5.4e-51       1     316 [.      32     380 ..      32     408 .. 0.77

  Alignments for each domain:
  == domain 1  score: 174.2 bits;  conditional E-value: 4.2e-54
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESS..... CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaad..... 92 
                 dv++iGGG++G+++A+++a rg  V+l+e++d+a+ g+S+r+s+l+h+glryl++  e+  l++eal e+  l+ +l++++  + + l++l a+     
  KIR62806.1  32 DVLVIGGGVTGAGAALDAASRGlkVALVEARDFAA-GTSSRSSKLIHGGLRYLEQL-EF-HLVHEALTERGLLATRLAPHLVRPVPILVPLPAGkgvrd 127
                 8******************************7777.***************99975.55.*******************************87533333 PP

                 .............HHHHHHHHHHHHHH..HHTTTTE.EEEEHHHHHHHSTTST..TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEE CS
         DAO  93 .............eeelealdkllall..leaglda.elldaeevrelepalp..gllgalfypdtgqvdpakltaalaraaealGveilegtevtgle 173
                                  +a d+ ++l   +  g +  + l++e +r+++p l+  gl+ga+ y+d gqvd+a+l+  lar+a++lG++++  t+++gl 
  KIR62806.1 128 lpgrtfrrsyyglG--VAAYDAFAGLFggG-RGMPLhRHLTREGARRVFPSLRadGLAGAIRYYD-GQVDDARLVVTLARTAASLGATVVSSTRAVGLV 222
                 33333333333221..33333444444743.67777478***********9334699********.*******************************98 PP

                 EEETCEEEEE.......EECTEEEE.....EEEEEEE--GGGHHHH.HTT..CTT.T.SEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEE CS
         DAO 174 eedgkvwgve.......rttpgend.....aadavVnaaGawsdll.gll..kel.d.lpispvrgqvlvlkplseklvspaailpvpetdddgrgvyv 255
                 ++   v+gv+       +   g+ d     +a++vV a+G+w+d + ++l    l + +++++ +g +lv+ p+s  +     + + ++ ++   +++v
  KIR62806.1 223 RQAREVTGVRvrdleapT---GSPDaefevRARTVVAATGVWTDDMsRMLndVGLrRgVRVRASKGVHLVV-PRSAIT-----GETGLILRTATSVLFV 312
                 878889999888854441...4432455445578**********66699955444525899**********.876633.....3344448888999*** PP

                 EEETTSEEEEEESSE.EETTCSSTSCSHHHHHHHHHHHHHHSGG.G..CGEEEEEEEEEEE....TTSS CS
         DAO 256 tprkdgrvlvGgtad.eesgdddpevdeedidellealrklfPq.l..gdvlrkwaGlrpl....pdgl 316
                 +p+  g+ ++G+t++ ++ +  +p+++++di++lle++++++ + l  +d++  +aGlrpl     d  
  KIR62806.1 313 IPWG-GHWIIGTTDTdWRLDRSHPAASARDIAYLLEQVNTVLDRpLttDDIEGVYAGLRPLlageADST 380
                 **95.99999***98877777779******************76644589**********533333443 PP

>> DAO_C  C-terminal domain of alpha-glycerophosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.2       8.6   1.1e+04      81      94 ..     409     422 ..     403     423 .. 0.76
   2 !  113.6   0.2     4e-36   5.1e-33       1     126 []     428     553 ..     428     553 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 8.6
                 S---SHHHHHHTTS CS
       DAO_C  81 EmartlvDvlaRRt 94 
                  ma  +vD  aRR+
  KIR62806.1 409 VMASDVVDRAARRL 422
                 58999999999996 PP

  == domain 2  score: 113.6 bits;  conditional E-value: 4e-36
                 --TTS---TT--.........TT-STTHT--HHHHHHHHHHHGGGHHHHHHHHHHTH...HHHHHTTS-HHHHHHHHHHHHHS---SHHHHHHTTS-HH CS
       DAO_C   1 crTkklpLvGaenw..sknlaaelaqeygldeevaehLaerYGsraeevlelakedekpelaerlspelpyieaevvYavrhEmartlvDvlaRRtrla 97 
                 +rT++lpL+Ga+++   ++ +a+la+++g++  v+ehL+erYG+ + ++l  a++d++p la++l+ +++y+ aev Ya+r+E a++l+Dvl+RRtr++
  KIR62806.1 428 SRTADLPLLGADGYaaMWRDRADLARRHGVPVGVVEHLLERYGTLTLDLL--ALVDADPLLASPLAGAPEYLAAEVTYAARAEGALHLEDVLTRRTRIS 524
                 58**********998888899*****************************..9999999**************************************** PP

                 HH-HHHHHHHHHHHHHHHHHHTT--HHHH CS
       DAO_C  98 fldadaalealpevaelmaeelgWdearr 126
                 f++a+++le ++++aelm++ lgWd+a+r
  KIR62806.1 525 FETAHRGLESAEHTAELMGAVLGWDAATR 553
                 *************************9975 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   2.7   7.9e-09     1e-05       1      42 [.      32      73 ..      32      83 .. 0.93
   2 !   25.4   0.5   5.5e-09   7.1e-06     135     204 ..     189     263 ..     135     297 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 7.9e-09
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG-- CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsq 42
                   Dv+ViG+G+ G  AAl aa +Glkva+ve  +   g++  s+
     KIR62806.1 32 DVLVIGGGVTGAGAALDAASRGLKVALVEARDFAAGTSSRSS 73
                   9*****************************999999887775 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 5.5e-09
                    ....HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEET.....TTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 135 etlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenp.....esgrevrirakavvlatgGfgr 204
                    +  v+  +l+++l+++a ++g ++  +t+a+ L+++ ++vtG+ v+++     +   e+++ra+ vv atg +  
     KIR62806.1 189 DGQVDDARLVVTLARTAASLGATVVSSTRAVGLVRQAREVTGVRVRDLeaptgSPDAEFEVRARTVVAATGVWTD 263
                    55678899**************************************99**999999999************8874 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.6   2.3e-10     3e-07       1      40 [.      32      71 ..      32      95 .. 0.93
   2 ?    0.8   0.0      0.19   2.4e+02      91     144 ..     199     259 ..     154     260 .. 0.69

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 2.3e-10
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGllts 40
                  Dv+V+GGg+ G  AA+ Aa +G kv+Lve r++  G++++
    KIR62806.1 32 DVLVIGGGVTGAGAALDAASRGLKVALVEARDFAAGTSSR 71
                  9********************************9998876 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.19
  FAD_oxidored  91 avleemlaeagvtvllntrlvevekegkriesvtveske.g......rktirAkvfiDATg 144
                    +l    a  g tv+  tr+v+ +++ +++++v+v++ e        + ++rA+ ++ ATg
    KIR62806.1 199 VTLARTAASLGATVVSSTRAVGLVRQAREVTGVRVRDLEaPtgspdaEFEVRARTVVAATG 259
                   4555555667999*******99999986788888876432111112456777777777775 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   1.0   2.8e-08   3.5e-05       1     112 [.      31     263 ..      31     293 .. 0.63

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.8e-08
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHH.HCHHHHHHHHHHHHH........................................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx........................................ RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcll.skallgvaedaeias........................................ 57 
                  +dv+viGgG+ G  aal++a  g+kv+lv + + +  g+ +  sk ++g  +  e+++                                        
   KIR62806.1  31 FDVLVIGGGVTGAGAALDAASRGLKVALV-EARDFAAGTSSRsSKLIHGGLRYLEQLEfhlvhealtergllatrlaphlvrpvpilvplpagkgvrd 127
                  59***************************.55556665555525555555555555556666666666666666666666666666666666666666 PP

                  ...........................................................................HHHHCHHHHCCCCHCCTCEEEEE CS
                  ...........................................................................xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ...........................................................................evvkklnqgielllgeevvkidp 80 
                                                                                             +   +l++   ++  + +v++ +
   KIR62806.1 128 lpgrtfrrsyyglgvaaydafaglfgggrgmplhrhltregarrvfpslradglagairyydgqvddarlvvtlaRTAASLGAT--VVSSTRAVGLVR 223
                  666666666666666666666666666666666666666666666666666666666666666666655555554222222222..222333555555 PP

                  SCEEEEETEEEC........TCEEEEEESEEEE---EEE- CS
                  xxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  81 gkkkvklekkke........gdeekiaydklvlAtGsspr 112
                  ++++v+    ++        + e+++ + ++v AtG ++ 
   KIR62806.1 224 QAREVTGVRVRDleaptgspDAEFEVRARTVVAATGVWTD 263
                  5555555444446666666666666666666666666655 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   2.9   8.5e-08   0.00011       2     221 ..      31     317 ..      30     352 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 8.5e-08
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS.S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE................. CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp.radglnqrtmellrqlGledrilaegapnelmgealyne................. 79 
                     dVl++G+G +G+ +al  +++G +v lve r+ ++ ++ r++ l    ++ l+ql     +  e+ ++ +   +  ++                 
     KIR62806.1  31 FDVLVIGGGVTGAGAALDAASRGLKVALVEARDFAAGTSsRSSKLIHGGLRYLEQLE--FHLVHEALTERGLLATRLAPhlvrpvpilvplpagkg 124
                    69*******************************9999988****9999999999964..4455555445544444444456777************ PP

                    .......................................CCCC........CEEEEEHHCHHCST-CEE..--HHHHHHHHHHHHHHHTEEETCSE CS
  FAD_binding_3  80 .......................................lsdt........pkaradlelesspervtv..ypqteleriLvehaeerglqvrfkt 126
                                                           l  t        p  +++ + ++++ r+++  +   +l   L+  a++ g++v  +t
     KIR62806.1 125 vrdlpgrtfrrsyyglgvaaydafaglfgggrgmplhrhL--TregarrvfP--SLRADGLAGAIRYYDgqVDDARLVVTLARTAASLGATVVSST 216
                    **************************99999999966552..0446644232..333333344444444013445667789999************ PP

                    EEECCEECCCCCCCEEE......ECCTTEEEEEEEEEEEE--GTT....-HHHHHHTGGEEEEEEEEEEEEEEEEEEC-SCCCTTCCEEEEECCTT CS
  FAD_binding_3 127 evesleqdeegvtaevr......dketgeeetvrakYlvGaDGgr....Stvrktlgiefegeetvyeagvldvlfdadlsdiveplvlilsaesr 212
                    + ++l ++  +vt +          + ++e +vra+ +v+a G++    S++ +++g++ +g +      + +v+  ++ s+i  +  lil++  +
     KIR62806.1 217 RAVGLVRQAREVTGVRVrdleapTGSPDAEFEVRARTVVAATGVWtddmSRMLNDVGLR-RGVR---VRASKGVHLVVPRSAITGETGLILRTATS 308
                    ************998766777777778899**************933334455555555.3333...34455555555555566777889999999 PP

                    EEEEEECCE CS
  FAD_binding_3 213 gvmviPlen 221
                    ++ viP+  
     KIR62806.1 309 VLFVIPWGG 317
                    999999988 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   1.4   4.3e-07   0.00055       1      29 [.      32      60 ..      32      78 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.3e-07
                CEEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLit 29
                dv ViGgG  G  AAl aa +G+kv+L+ 
  KIR62806.1 32 DVLVIGGGVTGAGAALDAASRGLKVALVE 60
                79*************************93 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.8   3.1e-06     0.004       1      43 [.      35      82 ..      35      97 .. 0.79
   2 ?   -2.2   0.0       3.9     5e+03      32      52 ..     401     422 ..     399     430 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.1e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE...TT..C CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev...pg..v 43
                   ++G+G++G+ aA  +a +g++v l+e+rd   G +++ +    +g  +
     KIR62806.1 35 VIGGGVTGAGAALDAASRGLKVALVEARDFAAGTSSRSSKlihGGlrY 82
                   8****************************9988887665446344544 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.9
                    SGGG-EECE.TTCEECTS---E CS
  NAD_binding_8  32 GGraasyev.pgvrvdygahif 52 
                    GG+ ++y+v    +vd  a+ +
     KIR62806.1 401 GGKYTTYRVmASDVVDRAARRL 422
                    8899999886567778777765 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   1.9e-05     0.025       2      32 ..      33      63 ..      32      92 .. 0.93
   2 ?    0.7   0.1      0.63   8.1e+02      45      79 ..     200     234 ..     191     237 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversd 32
                v+v+GgG++g  +A  +a  g kV +ve++d
  KIR62806.1 33 VLVIGGGVTGAGAALDAASRGLKVALVEARD 63
                89**************************998 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.63
                 HHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEEE CS
   Pyr_redox  45 ilqeklekngievllntkveeiegsedgvesvklk 79 
                  l++    +g +v+ +t+++ ++ ++++v++v+++
  KIR62806.1 200 TLARTAASLGATVVSSTRAVGLVRQAREVTGVRVR 234
                 55667778899***************99****997 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   1.8e-05     0.023       2      36 ..      33      67 ..      32      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseeale 36
                v viG G+ Gag a  +as+gl+V lv+ ++ a+ 
  KIR62806.1 33 VLVIGGGVTGAGAALDAASRGLKVALVEARDFAAG 67
                78*************************99776554 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.8   2.1e-05     0.027       1      32 [.      31      62 ..      31      67 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.1e-05
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVllleka 32
                 +dv+viGgG  G  aA+ aa+rg +V+l+e+ 
   KIR62806.1 31 FDVLVIGGGVTGAGAALDAASRGLKVALVEAR 62
                 58***************************986 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.4e-05     0.044      29      61 ..      31      63 ..      25      93 .. 0.89
   2 ?   -2.5   0.1         2   2.6e+03      44      69 ..     202     227 ..     200     240 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.4e-05
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDvrp 61
                   vlviGgGv G  A+  a++ g kV +++ r 
   KIR62806.1 31 FDVLVIGGGVTGAGAALDAASRGLKVALVEARD 63
                 579**********************99998775 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2
                  HHHHHHTT-EEEEEESSHHHHHHHHH CS
  AlaDh_PNT_C  44 iatakglgakVtvlDvrparleqles 69 
                  ++ta++lga+V+         +q ++
   KIR62806.1 202 ARTAASLGATVVSSTRAVGLVRQARE 227
                  68999999999988777777666666 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   8.5e-05      0.11      18      50 ..      31      62 ..      19      77 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.5e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailers 50
                 Dv+++G+G +G  aa   a + +lkva++e++
  KIR62806.1 31 FDVLVIGGGVTGAGAALDAASR-GLKVALVEAR 62
                6********************9.********86 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00032      0.41     165     203 ..      31      69 ..       4      89 .. 0.81
   2 ?   -2.3   0.0       1.7   2.1e+03     122     135 ..     248     261 ..     222     265 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00032
  Pyr_redox_3 165 qkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekee 203
                   +v+ViGg+ +++ aAl+ +++g +V +v  ++    ++
   KIR62806.1  31 FDVLVIGGGVTGAGAALDAASRGLKVALVEARDFAAGTS 69 
                  5899*********************99999887555444 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
  Pyr_redox_3 122 tyeAkkviiAtGef 135
                  +++A++v+ AtG +
   KIR62806.1 248 EVRARTVVAATGVW 261
                  67888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 4072.85
//
Query:       KIR62807.1  [L=178]
Description: hypothetical protein TK50_17815 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1176.34
//
Query:       KIR62808.1  [L=466]
Description: FAD-linked oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-60  205.4   0.4    1.5e-60  204.9   0.4    1.2  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
    4.8e-39  133.3   4.3    1.1e-38  132.2   4.3    1.6  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.9   0.4   1.7e-64   1.5e-60       2     250 .]     218     465 ..     217     465 .. 0.95

  Alignments for each domain:
  == domain 1  score: 204.9 bits;  conditional E-value: 1.7e-64
                    -SEEEEEEEEESSHHHHHHHHHHHHHHT---SEEEEE-HHHHHHHHHTS-SSTTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE.. CS
  FAD-oxidase_C   2 pearavalvafpsfeaavkavreiaqagiipaalelmdkkaldlveatkgakkglpdeeealllvefegddeeeaeeelealveaileatgaadvl 97 
                    pe+  ++++ f+s ++a +av++ia++g+ p+ lel+d++ l+++ea++++  gl+++++alll  ++  +  +a  +l+  +++ +ea+ga +v+
     KIR62808.1 218 PEESLTLVAVFDSTADAGTAVAQIAAKGLTPSLLELLDRTHLRAIEAYQPM--GLRTDAQALLLAAVDTGS--RAADDLA-RIAEVCEAAGADEVY 308
                    7888999********************************************..***************999..5666777.8************** PP

                    ........ETGGGGGGGGHHHHHHHHHC....TTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEEEETTEEEEEEEEEEE..--TT--T CS
  FAD-oxidase_C  98 vaqdeaeaealwkaRkaalpylrdallk....agvavlseDtsvPvsrladlvrdikalldkyglevvlfgHagdgnlhlyilfdladeaeeerae 189
                     a+d+ ea+al++aR+ a p + +++++     ++  ++ D++vP+ +la+l+  + +++++  + + ++gHagdgnlh++i +d+ad+a +er +
     KIR62808.1 309 AATDAVEAAALLQARRLAHPAMEKFAADtypgGNGGLVIDDVAVPRGALAELLDGVARIAEECAVPIGVVGHAGDGNLHPNIVVDRADPASVERGR 404
                    ********************777777761111566789********************************************************** PP

                    HHHHHHHHHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT-- CS
  FAD-oxidase_C 190 klvdevvdlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgkv 250
                    +++de+++l +elgG+++gEHGvGl k+++l re g++g+ ++++i+aalDP g++NPgkv
     KIR62808.1 405 RAFDEIMRLGLELGGTCTGEHGVGLLKRDWLAREIGPVGVRVHQAIRAALDPTGLFNPGKV 465
                    ************************************************************8 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.2   4.3   1.2e-42   1.1e-38       1     139 []      42     181 ..      42     181 .. 0.98

  Alignments for each domain:
  == domain 1  score: 132.2 bits;  conditional E-value: 1.2e-42
                    EEEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC.SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTT CS
  FAD_binding_4   1 paavvrpeseeevaaalrlaneaglpvlvrGgGssllgqav.atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsg 95 
                    p +vvrp+++++va ++r+a+++g+pv+++G+ ++l+g+a   +g++vl++ +++rileid+ +++a+v++Gv+ + l+ a++++gl ++++pgs+
     KIR62808.1  42 PLVVVRPRDTAQVAGVIRAAARHGVPVVPQGARTGLAGAANaVDGAMVLSTVAMDRILEIDPVARIAVVQPGVVNATLAGAVRREGLYYPPDPGSW 137
                    789**********************************988778999*****99******************************************* PP

                    CGSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEEE CS
  FAD_binding_4  96 ipgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrls 139
                    +++t+GG++atnagG+++ kyG + ++vlglevvla Gev+r++
     KIR62808.1 138 ESSTIGGNVATNAGGMCCVKYGVTTEYVLGLEVVLASGEVLRTG 181
                    *****************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3126.93
//
Query:       KIR62809.1  [L=88]
Description: hypothetical protein TK50_17825 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-30  103.9   0.1    4.4e-30  103.7   0.1    1.0  1  DUF4031   Protein of unknown function (DUF4031)


Domain annotation for each model (and alignments):
>> DUF4031  Protein of unknown function (DUF4031)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   0.1   2.4e-34   4.4e-30       2      78 ..       3      76 ..       2      77 .. 0.98

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 2.4e-34
     DUF4031  2 yvDdarwpargrlwsHlvaD.sleELhafAarlGvprrafqrktskdHYDvpeerraeavalGAvevssrelvrrlra 78
                yvD ++wpargrlwsHl++D sl+ELh fA++lGvprraf+r    dHYD+p+er+++av lGA+ v sr+lvr+lra
  KIR62809.1  3 YVDRPAWPARGRLWSHLISDvSLAELHVFAETLGVPRRAFDR----DHYDIPAERYRMAVLLGARVVPSRDLVRLLRA 76
                ******************************************....*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       203  (0.0113224); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 620.17
//
Query:       KIR62810.1  [L=422]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-15   55.9  13.9    7.2e-15   55.2  13.9    1.3  1  FUSC_2    Fusaric acid resistance protein-like
    1.5e-05   25.2  10.7    2.3e-05   24.6  10.7    1.2  1  ArAE_1    Aromatic acid exporter family member 1
  ------ inclusion threshold ------
       0.12   11.9   6.8       0.12   12.0   5.3    1.5  2  BaxI_1    Bax inhibitor 1 like


Domain annotation for each model (and alignments):
>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2  13.9   1.2e-18   7.2e-15       2     127 .]      68     190 ..      63     190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 1.2e-18
      FUSC_2   2 avlia.ellglwrgeWalitaaivlsptlgasltravqRilGtvlGavlallllyllpgn.lalallvfllvfliafflkrnyalafifltllalllys 98 
                 a++++ ell+ +++ +a+i+a+  l+ ++g++l+r+v+ i+G+++G++l+ +l+y+l ++ ++l ++v  +++l++ff ++   +++++ t+++++++s
  KIR62810.1  68 AWIVShELLHNPQPVFAPISAVGTLAASVGQRLRRTVELIVGVAVGVFLGDVLIYFLGTGgWQLGMVVTAAILLTIFFGASVAIVIQAAATAVLIVTLS 166
                 333331356779****************************************999888877*****************977767777777766666666 PP

      FUSC_2  99 laagsgnpieialhRlldvliGiliallv 127
                       +  ++ + R++d+++G+ ial+v
  KIR62810.1 167 P-----STENLEIPRFVDAFVGGGIALVV 190
                 4.....3345679**************96 PP

>> ArAE_1  Aromatic acid exporter family member 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6  10.7   3.8e-09   2.3e-05       9     138 ..      60     191 ..      55     194 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.8e-09
      ArAE_1   9 Ktaiavalailia.ellgleyavsAgIiailsiqptkkrslrtalerllasvlaliiavvffellGykpiviglvlllfipltvklkleegivvssVlv 106
                   ++a+ala +++ ell+ +++v+A I a+ ++  +  + lr  +e +++++++++++ v++ +lG   + +g+v+   i lt+ +  +  iv+    +
  KIR62810.1  60 QAGLAAALAWIVShELLHNPQPVFAPISAVGTLAASVGQRLRRTVELIVGVAVGVFLGDVLIYFLGTGGWQLGMVVTAAILLTIFFGASVAIVIQAAAT 158
                 5699*****99993578999*********************************************************************8888877666 PP

      ArAE_1 107 lhllesksislal.llnelllilvGigvallvN 138
                   l+++ s s     + +++  +vG g+al+v 
  KIR62810.1 159 AVLIVTLSPSTENlEIPRFVDAFVGGGIALVVT 191
                 66666666555554789*************996 PP

>> BaxI_1  Bax inhibitor 1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   5.3   1.9e-05      0.12      18     122 ..      39     152 ..      25     162 .. 0.73
   2 ?   -1.1   0.2      0.19   1.1e+03      36      66 ..     154     191 ..     146     200 .. 0.43

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.9e-05
      BaxI_1  18 aeamtvddvvvktaillgvlv...vtavvtwflvlaaaaalllvgalvglvlalvasfkkkvspalvllYAvleGlflGgislvfea......pgivvq 107
                 + ++t+ d + ++ + lg++v   ++a+++w++  +   +   v a ++ v  l+as+ +++ +++ l+  v+ G+flG + ++f          +v+ 
  KIR62810.1  39 RGKATLHDRLHRVRMALGLAVqagLAAALAWIVSHELLHNPQPVFAPISAVGTLAASVGQRLRRTVELIVGVAVGVFLGDVLIYFLGtggwqlGMVVTA 137
                 3348999999999999999872224566667666655555444455556777888999999999999999*********77777766699998889999 PP

      BaxI_1 108 AvlgTlgvfavmlvl 122
                 A+l+T+   a ++++
  KIR62810.1 138 AILLTIFFGASVAIV 152
                 999998776665555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.19
      BaxI_1  36 vlvvtavvtwflvlaaaaa..........lllvgalvglvl 66 
                  +++tav+ ++l ++   +          ++++g+++ +v+
  KIR62810.1 154 QAAATAVLIVTLSPS---TenleiprfvdAFVGGGIALVVT 191
                 223333333333332...23446654444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1201  (0.0669864); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 2759.07
//
Query:       KIR62811.1  [L=83]
Description: hypothetical protein TK50_17850 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.2   11.9   0.0       0.24   11.6   0.0    1.2  1  CCSMST1   CCSMST1 family


Domain annotation for each model (and alignments):
>> CCSMST1  CCSMST1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.3e-05      0.24      27      52 ..      28      53 ..       7      57 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.3e-05
     CCSMST1 27 erpwykvlvislslaaflvYFcilRe 52
                + p + + v+    +afl+YF+ +R 
  KIR62811.1 28 SLPVFWKKVFLWGGVAFLIYFVAFRP 53
                556655578888899**********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 643.82
//
Query:       KIR62812.1  [L=115]
Description: chaperonin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-14   54.3   0.0    1.5e-14   53.8   0.0    1.3  1  Cpn10     Chaperonin 10 Kd subunit
  ------ inclusion threshold ------
       0.07   12.8   0.1        1.8    8.3   0.0    2.3  2  OB_RNB    Ribonuclease B OB domain


Domain annotation for each model (and alignments):
>> Cpn10  Chaperonin 10 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   1.7e-18   1.5e-14       2      92 ..      13      98 ..      12      99 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 1.7e-18
                -EE-TTEEEEEES..GG-TTS-TT----HHHHH..SEEEEEEEEE-T........TS-TTS--T-EEEEEGGGTSS-GG---.EEEEEGGG--EE CS
       Cpn10  2 ikplgdrVlvkra..eeeekteggiilpdsake..kpeqGvVvaVGegarnekgedvplevkvgdkVlfpkyagtkvkvdgkeylilkekdIlav 92
                i+ l+drVlv+ +  e+e+++  gi++p++a+   +  +++ v VG+        +v+ ++  gd+Vlf++ + ++v+++g+ y++l+e+d++av
  KIR62812.1 13 IRLLHDRVLVRLEgsEGERRSTAGIVIPATAAVgkRLAWATAVGVGP--------HVR-SIVSGDRVLFDPDDRSEVELHGRGYVLLRERDVHAV 98
                889*********55377***********8877633667777777777........333.6889*******************************8 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0002       1.8      36      56 ..      18      38 ..      15      40 .. 0.86
   2 ?    2.3   0.0     0.015   1.3e+02      29      44 ..      61      76 ..      59      89 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0002
                -EEEEEEEESSSEEEEEEEEE CS
      OB_RNB 36 DrVlvritkgdrrgrregrvv 56
                DrVlvr+++ + ++r+++ +v
  KIR62812.1 18 DRVLVRLEGSEGERRSTAGIV 38
                9********998888888775 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.015
                HTTS-TT-EEEEEEEE CS
      OB_RNB 29 mkkamhGDrVlvritk 44
                ++++  GDrVl  ++ 
  KIR62812.1 61 VRSIVSGDRVLFDPDD 76
                567788****998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 792.94
//
Query:       KIR62813.1  [L=449]
Description: hypothetical protein TK50_17860 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-65  219.8  28.8    5.9e-65  219.6  28.8    1.0  1  AI-2E_transport  AI-2E family transporter
  ------ inclusion threshold ------
      0.028   14.8   4.4      0.045   14.2   0.4    2.9  2  Phage_holin_6_1  Bacteriophage holin of superfamily 6 (Holin_
       0.53   10.2   2.1        1.5    8.8   0.0    2.4  2  ApoO             Apolipoprotein O


Domain annotation for each model (and alignments):
>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.6  28.8   9.9e-69   5.9e-65       2     325 ..     104     428 ..     103     430 .. 0.96

  Alignments for each domain:
  == domain 1  score: 219.6 bits;  conditional E-value: 9.9e-69
  AI-2E_transport   2 llilvllllllalypfis...elllplliAlvlayllnpvvkfLkkrgvkrvlavllvlllllvllvllvlllvplliaqltqlvkslpayids 92 
                      ++++v+ ++ +al+++++    +++pl+iA++l+ ll p v +L + +++r+la+++vl+  l+++v++++l+v+++i+++ +l k+++  + +
       KIR62813.1 104 WRLIVIGVVFWALLKIVAtvsIVIIPLAIAMLLSALLAPAVGWLLRARFPRSLATAVVLVGGLAAVVGTLTLVVNEFIKGVPELSKKSSEGVRQ 197
                      5666777777777777777766799********************************************************************* PP

  AI-2E_transport  93 lqnilnelpslleelenliqalkqslskilsnilssilnsllsllasllglilslvlvllllffllldgeklrqgilkllpervrervkailre 186
                      +q++l++ p +l   +  ++    +++++++n ++ +++ ++s +a+l+++++ +vlvl+++ff+l+dg ++++ +++llp   r +v+ + r+
       KIR62813.1 198 IQDWLKTGPLHLSDSQ--LDRYIEEAQSWINNNTERFTSGAVSTAATLAEVLTGIVLVLFATFFFLRDGSRIWRFLVRLLPVAARWKVDDAGRA 289
                      ***************6..8999999********************************************************************* PP

  AI-2E_transport 187 lektlsgylrgqvlvaliigvlvfigllilgvpyalllailvglanliPyiGavivlipiaiialltggikevlivlivvllvqliegnilePk 280
                      + +tl++y+r++vlva+i +v  + +l+++ +p+a+ la lv+l ++iP++Ga+++  +++++al++ g+ ++li+l vv+ vq++eg++l+P 
       KIR62813.1 290 SWETLGAYVRATVLVAFIDAVGIGTFLVVFDIPFAFPLAALVFLGAFIPIVGAALSGGVAVLVALVDSGPVTALIILGVVIGVQQVEGHVLQPL 383
                      ***********************************************************9999999999************************* PP

  AI-2E_transport 281 lmgkrlglhplvillsllaggklfGlvGlilavpltavikailea 325
                      +mg+++ +hpl++++ + ag+ l+G+ G +++vpl av++++++ 
       KIR62813.1 384 IMGRAVAIHPLAVIIGIAAGVVLAGITGALVSVPLIAVLNTAVRR 428
                      ****************************************99875 PP

>> Phage_holin_6_1  Bacteriophage holin of superfamily 6 (Holin_LLH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.4   7.5e-06     0.045       3      95 ..     118     221 ..     116     227 .. 0.72
   2 ?    0.9   0.4      0.11   6.3e+02      11      53 ..     405     447 ..     389     448 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.5e-06
  Phage_holin_6_1   3 eilvsvlviiitivlgllvkki.kkll..........klkkqgekakkiaeiaknaVkaveqvakedakgeeKkeeAleklkellkekgisitd 85 
                      +i+ +v+++ii++++++l +++ ++             l++       +a+++ + + +v++ +k+  +   K +e ++++ ++lk   ++++d
       KIR62813.1 118 KIVATVSIVIIPLAIAMLLSALlAPAVgwllrarfprSLATAVVLVGGLAAVVGTLTLVVNEFIKGVPELSKKSSEGVRQIQDWLKTGPLHLSD 211
                      677788888888766655444304433666888555444444444445555566666789999999889999********************** PP

  Phage_holin_6_1  86 deleglIEaa 95 
                      ++l+  IE a
       KIR62813.1 212 SQLDRYIEEA 221
                      ********98 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.11
  Phage_holin_6_1  11 iiitivlgllvkkikkllklkkqgekakkiaeiaknaVkaveq 53 
                      ++ +i  +l++  ++ +l++++   +a ++ ++   aV ++ q
       KIR62813.1 405 VLAGITGALVSVPLIAVLNTAVRRLAARTVPDTPPDAVVVASQ 447
                      2223444555556666668888888888888886666666655 PP

>> ApoO  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   2.2      0.53   3.2e+03      74     103 ..     131     160 ..     125     168 .. 0.85
   2 ?    8.8   0.0   0.00025       1.5      33      97 ..     213     274 ..     183     281 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.53
        ApoO  74 lvagLaGsilarrrsilkRvlyPlalggla 103
                 ++a+L+   la   ++l+R+ +P  l++++
  KIR62813.1 131 AIAMLLSALLAPAVGWLLRARFPRSLATAV 160
                 688999999999999999999999999876 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00025
        ApoO  33 avqdelnkvkskvetaeqsvtdtiasLkeppedllPrlgyilvagLaGsilarrrsilkRvlyPl 97 
                 +++ ++++++s++++  + +t+   s +    ++l +++ +l+a+   +++ r +s++ R+l+ l
  KIR62813.1 213 QLDRYIEEAQSWINNNTERFTSGAVSTAATLAEVLTGIVLVLFAT---FFFLRDGSRIWRFLVRL 274
                 56667799********************99999****99999987...7999********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 2910.26
//
Query:       KIR62814.1  [L=720]
Description: ATP-dependent helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-27   97.0   0.0    1.9e-27   96.5   0.0    1.2  1  Helicase_C_2  Helicase C-terminal domain
    9.2e-08   32.0   0.3     0.0056   16.5   0.1    2.7  3  DEAD          DEAD/DEAH box helicase
    0.00073   19.6   0.0       0.43   10.6   0.0    2.2  2  ResIII        Type III restriction enzyme, res subunit
      0.002   17.8   0.0     0.0031   17.2   0.0    1.2  1  DEAD_2        DEAD_2
  ------ inclusion threshold ------
      0.065   12.9   0.0       0.14   11.9   0.0    1.6  1  RTP1_C2       Required for nuclear transport of RNA pol II C-


Domain annotation for each model (and alignments):
>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   5.2e-31   1.9e-27       2     161 ..     540     691 ..     539     701 .. 0.93

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 5.2e-31
  Helicase_C_2   2 lellevvpggvlvffpSyklleevverlkeeleskkieifveekeesrekvleeykekkkkgaillavcrGklsEGidfsddllraviivglPfpnp 98 
                   l l+ +  g++l +f+S +  ++++e l+++    +++++ + +ee    ++++++e  ++ ++l++v+  +l+ G+d+++d++++v+i +lPfp p
    KIR62814.1 540 LALVGALGGRTLGLFSSRRAAQQAAELLRAKT---DLPVLLQ-GEEALPLLVRRFRE--EQSSCLFGVM--SLWQGVDVPGDSCQLVVIDRLPFPRP 628
                   5677788899*******************986...79****9.**************..**********..************************** PP

  Helicase_C_2  99 kdpeveakreyldekgkknsgkewylpealravnQaiGRliRhkdDygaivllDeRfakee.ir 161
                   ++p  +a+   +d+ g+ ++++ +  p a  ++ Q++GRliR   D+g++ +lD+R+++++ ++
    KIR62814.1 629 DEPLAAARAAAVDAGGG-SGFSAVSVPIAAVRLAQGVGRLIRATGDRGVVAVLDSRLETARgYG 691
                   *****************.****************************************976244 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.6e-06    0.0056       6      38 ..      48      83 ..      43     114 .. 0.71
   2 !   12.7   0.0   2.3e-05     0.083      94     144 ..     232     283 ..     221     299 .. 0.71
   3 ?   -2.5   0.0       1.1   3.8e+03     159     168 ..     423     432 ..     374     434 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.6e-06
                HHHHHHH....TTCEEEEEESTTSSHHHHHHHHHHHH CS
                xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  6 eaiplil....gggdvlvaaeTGsGKTlaflipvlqi 38
                ++  +i     +g+++lv+a TG+GK+l +l p+l +
  KIR62814.1 48 QMATAIAecvaSGEHLLVQAGTGTGKSLGYLAPAL-T 83
                4444444444699*********************9.2 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.3e-05
                 HH.TTCSEEEEEHHHHHH.HHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHH CS
                 xx.xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  94 ld.ngvdivvgtpgrldd.llstgklnlsqvrflVlDEadrlldqgfsdfinr 144
                  + +++divv++++ l+  ++  g+  +   ++l++DEa++l d   s    +
  KIR62814.1 232 ARaREADIVVTNHSLLAVdMI-AGRHIVPPHKLLIVDEAHELADRVSSAAQAE 283
                 331569*******99987355.4555688889************955444433 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.1
                 TSEEEEEESS CS
                 xxxxxxxxxx RF
        DEAD 159 qrqvivlSAT 168
                 +r+v++ SAT
  KIR62814.1 423 ERTVVATSAT 432
                 2345666666 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00012      0.43       5      45 ..      43      81 ..      40     112 .. 0.82
   2 !    6.7   0.0    0.0019       6.7     100     147 ..     233     275 ..     213     294 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00012
                -HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHH CS
      ResIII  5 reyQeeaienlleklkskrdkrglikmaTGtGKTlvaakli 45
                r+ Q+++ ++++e +     +++l+++ TGtGK+l +++ +
  KIR62814.1 43 RPGQQQMATAIAECV--ASGEHLLVQAGTGTGKSLGYLAPA 81
                99**********999..5999************98777655 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0019
                 ....-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS. CS
      ResIII 100 dstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak 147
                 ++ +++i+vt+ + l  d+        +     ++++i+DEaH l++ 
  KIR62814.1 233 RAREADIVVTNHSLLAVDM-----IAGRHIVPPHKLLIVDEAHELADR 275
                 5566777777777777777.....66666667778*********9985 PP

>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.6e-07    0.0031     112     171 ..     227     284 ..     214     289 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.6e-07
                 HHHHHHHHCCTSEEEEEHHHHTSCCCHHHHHT..GCGCEEEECTCCCHHHHHHHCC-EEE CS
      DEAD_2 112 YylsrelledadiiilpYqyLldekireslkgislknsivilDEAhNiedvceeaasvei 171
                   +sr+ + +adi++  +++L    i+ ++  i    + +i+DEAh + d + +aa +e+
  KIR62814.1 227 AEASRARAREADIVVTNHSLLAVDMIAGRH--IVPPHKLLIVDEAHELADRVSSAAQAEL 284
                 4689**************999999999998..67999*****************999887 PP

>> RTP1_C2  Required for nuclear transport of RNA pol II C-terminus 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     4e-05      0.14      12      34 .]     356     378 ..     354     378 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4e-05
     RTP1_C2  12 VedtDtDdlVReHArdvLEeLea 34 
                 V++ D+D + +++A++vL+eL+a
  KIR62814.1 356 VKSDDPDPVRKQQAKAVLDELSA 378
                 8899*****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.38
# Mc/sec: 5753.32
//
Query:       KIR62815.1  [L=168]
Description: RNAse [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-14   51.7   0.3    1.5e-13   50.8   0.3    1.5  1  DUF402    Protein of unknown function (DUF402)


Domain annotation for each model (and alignments):
>> DUF402  Protein of unknown function (DUF402)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.3   8.1e-18   1.5e-13       3      68 .]      56     121 ..      55     121 .. 0.88

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 8.1e-18
                 EEEEE-TT-SEEEEEEEETTTEEEEEEEEEES--EE...E.EEE-EEEEEEESE.EE......-HHHH CS
      DUF402   3 elwllplglwynvfhfldgdgrlqglYvDiatppevge.gawktiDlyLDlvvs.pdgevevlDedEL 68 
                 ++ l+p+++w++ ++  ++  r+ ++Y+Diatp++++  ++++  Dl+LD+v+    g ve+ DedE+
  KIR62815.1  56 FVLLVPHHAWWTCMFNPPP--RTSEVYCDIATPARWEGdDTVHLFDLDLDVVRRrGTGLVELRDEDEF 121
                 67899******98777777..9**************667*************752669*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1114.15
//
Query:       KIR62816.1  [L=317]
Description: RNA polymerase subunit sigma-70 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-10   39.8   0.3    7.4e-10   38.5   0.3    1.7  1  Sigma70_r2    Sigma-70 region 2
    3.1e-10   39.6   0.1    5.6e-10   38.7   0.1    1.4  1  Sigma70_r4_2  Sigma-70, region 4
    5.4e-07   30.2   0.9    1.3e-06   29.0   0.9    1.7  1  SnoaL_2       SnoaL-like domain
    9.8e-05   21.8   0.1    0.00018   21.0   0.1    1.5  1  Sigma70_r4    Sigma-70, region 4
  ------ inclusion threshold ------
      0.037   14.4   0.0       0.11   13.0   0.0    1.8  1  DUF4440       Domain of unknown function (DUF4440)
       0.13   12.5   0.0       0.25   11.6   0.0    1.5  1  SnoaL_3       SnoaL-like domain


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.3   2.5e-13   7.4e-10       2      69 ..       8      76 ..       8      79 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 2.5e-13
                HHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGG..TSTTTCHHHHHHHHHHHHHHHHHHHHTSS CS
  Sigma70_r2  2 verylplvkrlarrllgsgadaeDlvQeaflrlwraver..fdpergvsfsawllriarnaaidrlRkrr 69
                +e+ + ++ +la+r+lgs+++aeD vQe++lr   a+ +   ++e g ++ awl+++  + ++d lR++r
  KIR62816.1  8 FEAERGRLTALAYRMLGSRSEAEDAVQETWLRCSGALGDpaRRAEVG-NLAAWLTTTCGRICLDVLRSAR 76
                5788999*************************998887211344556.89**************999976 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.1   1.9e-13   5.6e-10       3      54 .]     117     168 ..     116     168 .. 0.97

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.9e-13
                   HHHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   3 alrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   al+ +l++L ++qr +++l++++  + +E+Ae+lg++ ++ ++  sRAr++L
    KIR62816.1 117 ALLVLLERLGPEQRVALVLHDVFAVPFDEVAEVLGTTAVAARQLASRARRAL 168
                   68899********************************************997 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.9   4.3e-10   1.3e-06       1     100 [.     187     290 ..     187     292 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 4.3e-10
                 HHHHHHHHHTTCHHHHHHTEEEEEEEEET.TSE.......EESHHHHHHHHHHHHH..HEEEEEEEEEEEEEETTEEEEEEEEEEEEETTSSEEEEEEE CS
     SnoaL_2   1 vraflaalnagdldalaalfapdvvwedp.gge.......lrGreairaffralfa..afpdlrfeihdvvadgdrvavewtvtgtipatgrgvtvrgv 89 
                 v af+aa ++g l++l++++apdv++ +  gg        ++G ea+ +f+ +lf   +  + r++ + v++dg   +   tv+    ++gr  ++r v
  KIR62816.1 187 VAAFVAATESGELAELVRVLAPDVMLIGDgGGHfpaarrpVTGAEAVGRFILGLFGraGRYGARVRSRPVLVDGALGLQFETVH----TDGR--PLRLV 279
                 789************************7755557778899*********999999955556667777777*********99998....4555..6**** PP

                 EEEEEETTEEE CS
     SnoaL_2  90 dvfrvrdGkiv 100
                 + f v dG+i+
  KIR62816.1 280 TAFAVHDGRIT 290
                 **********8 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1     6e-08   0.00018       1      48 [.     121     168 ..     121     170 .. 0.96

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 6e-08
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 +L++L +++r  l+l  +   ++ E++e+lg +  ++rq+ +rA+r L
  KIR62816.1 121 LLERLGPEQRVALVLHDVFAVPFDEVAEVLGTTAVAARQLASRARRAL 168
                 599**************9999************************998 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.5e-05      0.11       3      82 ..     185     274 ..     184     290 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.5e-05
                 HHHHHHHHHHHCT-HHHHHHCEEEEEEEE-TT........S-EEEHHHHHHHHHC..CHCEEEEEEEEEEEEEEETTEEEEEEEEEEEEC CS
     DUF4440   3 aleealeeafvagdaealaallapdavlvgps........gtvldkeellealea..gfaagrslelteeevrvlgdlAvvtgrytfegr 82 
                 ++++a+ +a ++g +++l ++lapd++l+g++         +v++ e++   +    g+a    +++++  v v g l++++ +++++gr
  KIR62816.1 185 RVVAAFVAATESGELAELVRVLAPDVMLIGDGgghfpaarRPVTGAEAVGRFILGlfGRAGRYGARVRSRPVLVDGALGLQFETVHTDGR 274
                 6889999**********************9997777776555566666666665522333344447777777777777777777666655 PP

>> SnoaL_3  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.2e-05      0.25       3      84 ..     185     272 ..     184     297 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.2e-05
     SnoaL_3   3 alldafyeaaaegdfdalfalwaddivfigtgadel.......ltgreevrrslkqifakgegisfeltdvrvtesgdvawvtelldvt 84 
                  +++af +a ++g +++l+ ++a+d++ ig g   +       +tg e+v r++   f ++ +   +++++ v ++g +++  e+++++
  KIR62816.1 185 RVVAAFVAATESGELAELVRVLAPDVMLIGDGG-GHfpaarrpVTGAEAVGRFILGLFGRAGRYGARVRSRPVLVDGALGLQFETVHTD 272
                 68899*************************444.4423333335599999999999999999999999999999999888888887663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2385.29
//
Query:       KIR62817.1  [L=208]
Description: Pit accessory protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-24   84.0   0.1    1.1e-23   83.8   0.1    1.0  1  PhoU_div  Protein of unknown function DUF47
     0.0097   15.5   0.2      0.069   12.8   0.2    2.4  3  VraX      Family of unknown function
  ------ inclusion threshold ------
       0.31   11.5   2.2         57    4.3   0.0    3.3  3  NPV_P10   Nucleopolyhedrovirus P10 protein


Domain annotation for each model (and alignments):
>> PhoU_div  Protein of unknown function DUF47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.1   1.8e-27   1.1e-23      13     213 ..      12     205 ..       3     206 .. 0.92

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 1.8e-27
    PhoU_div  13 lqdhlekvsetvlkliellkallegdyekveellkeiselEreADeikreirlklekglflPvdRedllelveslDeildvlediamlvtlrkvefpee 111
                 + +++    +      ell+ l   +  +v ++ ++  e+E+  D+i+ +   k+++ +++P+dRed+ +l + lD+++d le ++ l+ l+ +   + 
  KIR62817.1  12 FYELFTRAAQNLVRGTELLNELALPG-VDVQSVSERLTEVEHDSDQITHDLYKKINSTFITPFDREDIYRLGSLLDDVMDHLEAVGNLLYLYGLTKLPA 109
                 55666666667777788999988877.899********************************************************************* PP

    PhoU_div 112 lkdeflallkktveaiealaevieeleklletalskkdiveeieslEdeiDqlqrklikklfsredasnplevlllveiieklenvsdraedvadrisi 210
                 l  e+ +l++++ + +++ ae++++l+    ++l+  d+  e ++lE++ Dq +r l+  lfs  + +  l vl ++e  ++le   d++e va++++ 
  KIR62817.1 110 LPRELHELVNVLDQQAKLTAEAMPRLKS--MKDLE--DYWIECNRLENDGDQAYRMLLVRLFS--GEYDALTVLKMKEVADELEAACDAFEHVANTVET 202
                 ***************************6..67777..8*************************..5689*****************************9 PP

    PhoU_div 211 ill 213
                 i +
  KIR62817.1 203 IAV 205
                 976 PP

>> VraX  Family of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         1   6.1e+03      14      23 ..      12      21 ..       9      23 .. 0.77
   2 !   12.8   0.2   1.1e-05     0.069      22      53 ..      62      93 ..      55      95 .. 0.84
   3 ?   -1.2   0.0      0.26   1.6e+03      15      28 ..     193     206 ..     186     207 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1
        VraX 14 vYEiitktFk 23
                 YE+ t+  +
  KIR62817.1 12 FYELFTRAAQ 21
                5999999765 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.1e-05
        VraX 22 FktitikcDetFnktEiykLLsLLenDvDnmk 53
                +k+i   +   F+ ++iy+L sLL++ +D+++
  KIR62817.1 62 YKKINSTFITPFDREDIYRLGSLLDDVMDHLE 93
                677777777889*****************985 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.26
        VraX  15 YEiitktFktitik 28 
                 +E +  t +ti++k
  KIR62817.1 193 FEHVANTVETIAVK 206
                 78899999999998 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.02   1.2e+02      12      36 ..      39      63 ..      31      70 .. 0.78
   2 ?    1.9   0.1     0.052   3.1e+02      42      71 ..     105     133 ..      74     140 .. 0.58
   3 ?    4.3   0.0    0.0096        57      37      61 ..     179     203 ..     173     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.02
     NPV_P10 12 dikavddkVdalqqqvddvqenlpd 36
                d++ v+++++ +++  d+++++l +
  KIR62817.1 39 DVQSVSERLTEVEHDSDQITHDLYK 63
                7888888888888888888887755 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.052
     NPV_P10  42 ekLdaqsaqLaeletkvenIqdiLnpdevP 71 
                 +kL a++ +L+el + +++ q  L+++ +P
  KIR62817.1 105 TKLPALPRELHELVNVLDQ-QAKLTAEAMP 133
                 5677777777777665554.4445545555 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0096
     NPV_P10  37 vtelnekLdaqsaqLaeletkvenI 61 
                 ++e+ ++L+a  ++ +++ ++ve+I
  KIR62817.1 179 MKEVADELEAACDAFEHVANTVETI 203
                 58999******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1506.59
//
Query:       KIR62818.1  [L=335]
Description: inorganic phosphate transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-82  277.9  34.1    9.2e-82  274.8  34.1    1.9  1  PHO4      Phosphate transporter family
    0.00027   21.3   3.4    0.00027   21.3   3.4    2.6  3  DUF4396   Domain of unknown function (DUF4396)


Domain annotation for each model (and alignments):
>> PHO4  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.8  34.1     1e-85   9.2e-82       1     337 []      22     323 ..      22     323 .. 0.91

  Alignments for each domain:
  == domain 1  score: 274.8 bits;  conditional E-value: 1e-85
        PHO4   1 iGanDvanafatsvgskaltlrqAvilaaifeflGavllGaeVaetirkgivdvelfdpselm..lgmlaallgaavwlllatvlglPvStthslvGal 97 
                 +G++D+ana+atsv+++alt+r A++laa+ +f+Ga + Ga Va+t++ g+v      p+ ++   +++a +lga++w+l+++++glP+S++h+l G+l
  KIR62818.1  22 NGFHDAANAIATSVSTRALTPRVALALAAVGNFVGAHF-GAGVAKTVGDGLVT----LPTGIAslGVVFAGVLGAIAWNLITWYFGLPSSSSHALFGGL 115
                 8***********************************99.599*********93....233343336999****************************** PP

        PHO4  98 iGaalaaeggeavkwkklvk.ivlswvlsPllggiiaallfllvkrlilvkeklknalralpvlvlvtiailalsilfkgeskkddeeteklfkflqvv 195
                 +Ga+l a+ g +v+w ++++ ++l +vlsP++g+ +++ll+l++ +l                                   + +  + ++ f+++q  
  KIR62818.1 116 VGATLLAT-GGVVQWVNIGEkVLLPMVLSPIVGLTLGYLLMLAILWLFR---------------------------------NGQPGKLNRGFRWAQTA 180
                 ******64.48****888866**************************22.................................2355678888******* PP

        PHO4 196 saalvsfahGanDvanaiGpllaalisiyk...a.sk.evplwvlllgglaialGlllgGkrviktvGekitkkltpsrGfaaelaaaltvl.lasklg 288
                 saa++s++hG++D+a+++G++++al+   +   + +k ++p wv+ + ++++a+G++ gG+r+i+t+G+ki+ +l p +Gfaae++a+ +++  a  l+
  KIR62818.1 181 SAAAMSVGHGMQDAAKTMGIVVLALY---TggfQdDKtHIPGWVFWTSAAMLAAGTYAGGWRIIRTLGRKII-DLGPPEGFAAETVASSVLYfNALVLH 275
                 *********************99996...3343345567899******************************.6**************99995677899 PP

        PHO4 289 lPvStThvlvgavvGvGlakkresavnwklvrnivlaWvlTlpvsalls 337
                  P+StTh++++a++GvG++k r sav+w++++nivlaW++T+p++al++
  KIR62818.1 276 APISTTHTITSAIMGVGATK-RLSAVRWNVAGNIVLAWIITFPAAALIA 323
                 9*******************.9*************************96 PP

>> DUF4396  Domain of unknown function (DUF4396)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2      0.58   5.2e+03      14      40 ..      47      73 ..      32      93 .. 0.67
   2 !   21.3   3.4     3e-08   0.00027       8     120 ..     106     229 ..     102     239 .. 0.66
   3 ?   -0.3   0.4      0.14   1.2e+03      72     101 ..     287     316 ..     260     330 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.58
     DUF4396 14 aGcaiGdilgmviltslslalglpmaa 40
                a  a+G ++g+ ++  +  ++g ++++
  KIR62818.1 47 ALAAVGNFVGAHFGAGVAKTVGDGLVT 73
                556778888888777766666555543 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 3e-08
     DUF4396   8 atlhClaGcaiGdilgmviltslslalglpmaatmilsvvlalllgllletalllr.........ekglslaealktAlkadtlSmlamevgmnlvmll 97 
                 + +h l G+ +G  l +  ++ + + +g+++++ m+ls +++l+lg+ll +a+l           ++g  +a+++ +A+ +    m      m +v+l+
  KIR62818.1 106 SSSHALFGGLVGATLLATGGVVQWVNIGEKVLLPMVLSPIVGLTLGYLLMLAILWLfrngqpgklNRGFRWAQTASAAAMSVGHGMQDAAKTMGIVVLA 204
                 568999999999999999777566667********************9998887663333333332333333333333333333443333333333333 PP

     DUF4396  98 l.lgamda.eleltsplfWfslqls 120
                 l +g+++  + ++  ++fW+s+++ 
  KIR62818.1 205 LyTGGFQDdKTHIPGWVFWTSAAML 229
                 357999999**********965542 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.14
     DUF4396  72 alktAlkadtlSmlamevgmnlvmllllga 101
                 a+    +++ lS + ++v+ n+v ++++++
  KIR62818.1 287 AIMGVGATKRLSAVRWNVAGNIVLAWIITF 316
                 444444455666666777777777666433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2439.44
//
Query:       KIR62819.1  [L=322]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-21   76.0   0.1    7.3e-21   75.2   0.1    1.4  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
    0.00066   19.7   0.0     0.0011   19.0   0.0    1.3  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 
  ------ inclusion threshold ------
      0.013   16.0   0.0      0.022   15.2   0.0    1.3  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
      0.018   15.6   0.0      0.034   14.7   0.0    1.4  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
      0.021   15.5   0.1      0.035   14.8   0.1    1.3  1  NAD_binding_3   Homoserine dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.1     2e-24   7.3e-21       2     117 ..       3     118 ..       2     121 .. 0.96

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 2e-24
                   EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE.EESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-S CS
  GFO_IDH_MocA   2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve.aysdleelladpeidavivatpngtheelakaaleagkhvllEKPlat 97 
                   r++i  +G i+ ++++ l++  +++e+va+ ++ +e+a+ +a++ g++ ay +++el+ad+e+da++vatp   h+e ++ +l+ag +vl+EKP+++
    KIR62819.1   3 RWGILATGHIAGRFAEDLRHV-PGAELVAVGSRTPEAARGFADRHGAQrAYGSWAELAADDEVDAIYVATPHAAHHEATMICLAAGRAVLVEKPFTL 98 
                   7888999***99999999999.*************************************************************************** PP

                   SHHHHHHHHHHHHHHTS-EE CS
  GFO_IDH_MocA  98 tveeakelvelaekkgklvs 117
                   ++++  elve+a+ +g  ++
    KIR62819.1  99 DLADSTELVEAARARGAFLM 118
                   **************998766 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     3e-07    0.0011       2      64 ..     134     194 ..     133     214 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3e-07
                     HHHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSHHCSTSHHHHTCHHHHHHHHHHHTSEEEE CS
  GFO_IDH_MocA_C   2 elIengklGevvsvdvwtldtragaeakkrwkrrkkksgGvlgdlgiHdiDllqwLfGqppsv 64 
                     el+++g++G+v+ v    +   ag++a+ +  r+++ +gG+l dlg++   l+++L+G p++v
      KIR62819.1 134 ELLAEGAIGQVTGV--QADFGVAGPFAPESRMRARALGGGALLDLGVYPVSLAHLLLGVPQHV 194
                     899***********..59999999999888888889**********************99876 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   6.3e-06     0.022       7      92 ..       8      89 ..       5      93 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.3e-06
                    TTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEE.GGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTSE CS
  Semialdhyde_dh  7 atGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkved.vdeeelkevdivflalpagvskelapklaeagvk 92
                    atG +  ++++ L++ p +elv++ s++ +a + +a++++a     +  + + ++ ++ +evd +  a+p+ +++e +  +++ag  
      KIR62819.1  8 ATGHIAGRFAEDLRHVPGAELVAVGSRTPEAARGFADRHGA-----QRAYGSwAELAADDEVDAIYVATPHAAHHEATMICLAAGRA 89
                    8*************************************992.....223333233556689***************99999888865 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   9.5e-06     0.034       3      76 ..       5      78 ..       3      90 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.5e-06
                   EEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.-EEECECHHHHHH.H-SEEEE-S-HHHHHH CS
  F420_oxidored  3 giiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg.vkvtavdneeaae.eadvvvlavkpedvee 76
                   gi+++G+++  +a+ l +      e+v ++sr+pe a+ +a++ g  ++ ++ +e aa+ e d + +a + ++++e
     KIR62819.1  5 GILATGHIAGRFAEDLRHVP--GAELVAVGSRTPEAARGFADRHGaQRAYGSWAELAADdEVDAIYVATPHAAHHE 78
                   9*************999864..47777677************9994455554555555578888888888777665 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   9.7e-06     0.035       3     112 ..      10     115 ..       9     119 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.7e-06
                    SHHHHHHHHHHHH---SSEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-S--HHHHTTHHHHHHTTEEEE-S--CGGG-HH CS
  NAD_binding_3   3 GaiGsavleqlkrqqseielelvavadrdsllskdrkallasealtldlddliahldpdvvVEcasseavaelvlkaLkagkdvvtankgaladea 98 
                    G i+++++e l+  +   ++elvav  r ++++   +   ++++ + ++ +l+a+ ++d +  +++++a +e    +L+ag  v++  k    d+a
     KIR62819.1  10 GHIAGRFAEDLRHVP---GAELVAVGSRTPEAARGFADRHGAQRAYGSWAELAADDEVDAIYVATPHAAHHEATMICLAAGRAVLVE-KPFTLDLA 101
                    899999999999999...68*********8888889999***************9999999999****************9999874.444459** PP

                    HHHHHTSSSTTS-- CS
  NAD_binding_3  99 lyeeLreaaeanga 112
                       eL+eaa+a ga
     KIR62819.1 102 DSTELVEAARARGA 115
                    ***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2609.52
//
Query:       KIR62820.1  [L=277]
Description: NUDIX hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-08   34.1   0.7    6.7e-06   26.2   0.7    3.0  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.7   3.7e-10   6.7e-06       2     122 ..      31     222 ..      30     229 .. 0.74

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 3.7e-10
                 EEEEEEEEEEETTSE...EEEEEES.SSSTTT.EESSEEECBT...........................TSHHHHHHHHHHHHHHSE...EEEEEEEE CS
       NUDIX   2 lrravgvvllnekge...vLlvrrs.kkpfpg.WelPgGkvep...........................gEtpeeAArREleEEtGl...eaellell 65 
                 +r+a+ v+ll++ g    v ++rr     f g +++PgG+v+p                            +++  AA+RE++EE G+    ++  +++
  KIR62820.1  31 PRVAATVLLLRPAGDdfeVYVIRRVaAMAFGGvYAFPGGGVDPsdsaahldwagpepagwagrlgvapdaAQAVVCAAAREVFEESGVllaGPDPSTVV 129
                 589999**99999999*********9999999889**********************************888999************644422444555 PP

                 EEEEEEEEEEEEEEE........................................EEEEEEEEE..EEECSGCSSTSTTTEEEEEEEEHHHHHHHHTHC CS
       NUDIX  66 grlhylapydgpygd........................................eheilyvfl..eevegelepndenevsevrwvpleellkeklaa 122
                 g++   + +     +                                        ++ ++ +f+    ++g+ + + ++e +   wv+++++ +++++a
  KIR62820.1 130 GDVSGDDWE-----SarqdlearrrgfadllagrgltlrsdlllpwsrwitpefePRRFDTYFFvaLLPTGQRTRDVSGEADHTMWVRPTDA-LARAEA 222
                 533222222.....122333555567777777777777777888885555555554444444444778888888889999999999999999.444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       203  (0.0113224); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2056.96
//
Query:       KIR62821.1  [L=258]
Description: phosphate ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-31  108.8   0.0    4.1e-31  108.3   0.0    1.2  1  ABC_tran      ABC transporter
    1.6e-08   34.7   0.0    0.00079   19.3   0.0    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    5.9e-08   32.4   0.0     0.0074   15.8   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
    8.6e-05   22.4   0.0    0.00017   21.4   0.0    1.5  2  AAA_15        AAA ATPase domain
    0.00014   22.2   0.0    0.00025   21.3   0.0    1.6  1  AAA_22        AAA domain
    0.00052   19.7   0.0     0.0011   18.6   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
     0.0011   19.5   0.1     0.0028   18.2   0.0    1.7  2  AAA_23        AAA domain
     0.0013   18.5   0.0     0.0029   17.3   0.0    1.9  1  AAA_30        AAA domain
     0.0015   18.5   0.0     0.0032   17.4   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
     0.0031   17.7   0.0     0.0056   16.9   0.0    1.6  1  AAA_33        AAA domain
     0.0057   16.6   0.0     0.0085   16.0   0.0    1.3  1  Rad17         Rad17 P-loop domain
  ------ inclusion threshold ------
      0.023   15.1   0.1      0.043   14.2   0.1    1.7  1  AAA_16        AAA ATPase domain
      0.025   14.3   0.0      0.038   13.7   0.0    1.3  1  PRK           Phosphoribulokinase / Uridine kinase family
      0.036   14.6   0.0      0.066   13.8   0.0    1.6  1  AAA_18        AAA domain
      0.047   12.9   0.0      0.094   11.9   0.0    1.3  1  G-alpha       G-protein alpha subunit
       0.06   13.3   0.0       0.11   12.4   0.0    1.4  1  NACHT         NACHT domain
      0.064   13.2   0.0       0.17   11.8   0.0    1.6  2  ATPase_2      ATPase domain predominantly from Archaea
      0.069   13.5   0.0       0.27   11.7   0.0    2.0  2  RNA_helicase  RNA helicase
      0.072   12.3   0.0       0.12   11.5   0.0    1.3  1  NB-ARC        NB-ARC domain
      0.074   12.8   0.0       0.16   11.7   0.0    1.5  1  AAA_24        AAA domain
      0.074   13.5   0.1       0.77   10.2   0.0    2.4  2  AAA           ATPase family associated with various cellular 
      0.077   12.6   0.0       0.16   11.5   0.0    1.5  1  AAA_25        AAA domain
       0.13   11.1   0.1       0.77    8.5   0.0    1.9  2  Adeno_IVa2    Adenovirus IVa2 protein
       0.16   10.6   0.1       0.25   10.0   0.1    1.3  1  AAA_13        AAA domain
       0.16   12.0   0.0       0.37   10.8   0.0    1.6  1  AAA_5         AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.0   5.7e-34   4.1e-31       2     136 ..      21     176 ..      20     177 .. 0.96

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 5.7e-34
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.....SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH.............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp.....teGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren.............. 79 
                 +n++l++++ +++a++G++G+GKSt+l+ + ++++       eG++++dg+++ +   + + +r+ ig+++q p+ fp+++++en              
  KIR62821.1  21 ENINLTVEPKTVTALIGPSGCGKSTFLRSINRMHEVlpgarVEGDLTIDGQNIYDrdVDVTAVRRMIGMVFQRPNPFPTMSIYENvvaglrlngvrkks 119
                 79*******************************999899999************98888999*******************************999888 PP

                 HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                   de +e+ l++ +l +  ++++++ ++ LSgGq+qr+++ar+++ +p+++l+DEp+
  KIR62821.1 120 ILDEAAENSLRSANLWNEVKDRLGKPGAGLSGGQQQRLCIARTIAVEPQVVLMDEPC 176
                 78888******************9*99*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.1e-06   0.00079       1      38 [.      32      72 ..      32      89 .. 0.77
   2 !   13.6   0.0   5.9e-05     0.042     237     298 ..     149     206 ..      96     208 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.1e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl...drdvegltdelsg 38
                +++liGp g+GKS++L+ +  ++ +   +r   +lt++ ++
  KIR62821.1 32 VTALIGPSGCGKSTFLRSINRMHEVlpgARVEGDLTIDGQN 72
                69********************9997654444444444444 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 5.9e-05
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll..ell.kelsrngaQviltTHS 298
                 lS G+++ l+++  ++  +    ++l DEp + L+P  +++l+  +l+  ++ +    +i++TH+
  KIR62821.1 149 LSGGQQQRLCIARTIAVEP---QVVLMDEPCSALDP--ISTLAieDLMfQLKDK--FTIIIVTHN 206
                 5777777766666666666...9*************..6666667666355555..99******8 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     2e-05     0.014       9      44 ..      16      50 ..      12      56 .. 0.80
   2 !   15.8   0.0     1e-05    0.0074     135     206 ..     113     214 ..      59     226 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2e-05
                SETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  9 nFksyagktvilpfsksftaivGpNGSGKsnlldAi 44
                +Fk +++ + +++ +  +ta++Gp G+GKs +l +i
  KIR62821.1 16 GFKAIENINLTVEPK-TVTALIGPSGCGKSTFLRSI 50
                799996444444444.49***************998 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1e-05
                 T..................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSH CS
                 x..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e..................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislre 199
                 +                                   LSgG+++ + +a  +A++   p+ ++l+De  +aLD   + ++ +l+ + ++++ +i+++++ 
  KIR62821.1 113 NgvrkksildeaaenslrsanlwnevkdrlgkpgaGLSGGQQQRLCIARTIAVE---PQ-VVLMDEPCSALDPISTLAIEDLMFQLKDKFTIIIVTHNM 207
                 0555555555555555555555555666666666679*****998888888765...44.789**********************************99 PP

                 HHCCC-S CS
                 xxxxxxx RF
       SMC_N 200 emlekad 206
                 ++ ++++
  KIR62821.1 208 QQAARVS 214
                 8877664 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.4e-07   0.00017      11      46 ..      17      53 ..      15     103 .. 0.93
   2 ?   -2.6   0.0       4.8   3.5e+03     142     142 ..     210     210 ..     183     253 .. 0.50

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.4e-07
      AAA_15 11 FRslkdveidlsee.ltvliGkNnsGKSsilealdlF 46
                F++++++ + ++++ +t liG+ ++GKS++l+ ++ +
  KIR62821.1 17 FKAIENINLTVEPKtVTALIGPSGCGKSTFLRSINRM 53
                9*****999999999*******************877 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.8
      AAA_15 142 k 142
                  
  KIR62821.1 210 A 210
                 0 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.4e-07   0.00025       4     106 ..      29     132 ..      26     203 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.4e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee...................erpevv..fvtlpsstsskdllrellralglelkaerlsseellea 81 
                  +++++++G+sG+GK+t lr + + ++  + a+                    + ++ +   ++ p++    +++++++  l l++ +   +++ l ea
  KIR62821.1  29 PKTVTALIGPSGCGKSTFLRSINRMHEVLPGARVegdltidgqniydrdvdvtAVRRMIgmVFQRPNPFPTMSIYENVVAGLRLNGVR---KKSILDEA 124
                 57899********************977666666666666666666655555533333333555555556666666666666655555...33333233 PP

      AAA_22  82 leqalraravielliiDEaqhlrse 106
                  e+ lr+                 +
  KIR62821.1 125 AENSLRS-----------------A 132
                 3333333.................3 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.6e-06    0.0011      16      40 ..      24      48 ..      12      54 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.6e-06
      AAA_29 16 tieidlkgatlltGpsGsGKSTllD 40
                 +++++k +t l+GpsG GKST+l 
  KIR62821.1 24 NLTVEPKTVTALIGPSGCGKSTFLR 48
                34566677**************985 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     4e-06    0.0028       7      40 ..      17      51 ..      13      87 .. 0.83
   2 ?   -1.3   0.1       3.7   2.7e+03     149     149 ..     195     195 ..     111     252 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4e-06
      AAA_23  7 frsfrdqeidF...skgltlItGpNGaGKTTildAik 40
                f+ +++  i++    k +t+++Gp G+GK+T+l+ i 
  KIR62821.1 17 FKAIEN--INLtvePKTVTALIGPSGCGKSTFLRSIN 51
                444444..555445559****************9985 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.7
      AAA_23 149 k 149
                 k
  KIR62821.1 195 K 195
                 2 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.1e-06    0.0029      13      50 ..      25      63 ..      19     230 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.1e-06
      AAA_30 13 lltsgdrvavltGpAGtGKttalkalreaweaa.ggrvi 50
                l+ +++ v++l Gp G GK+t l+++++++e   g rv 
  KIR62821.1 25 LTVEPKTVTALIGPSGCGKSTFLRSINRMHEVLpGARVE 63
                5667889************************99887765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   4.5e-06    0.0032      89     121 ..      19      52 ..       2      67 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4.5e-06
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallp 121
                  ++e+++  ++   +++l+G+SG GKSt++ +++ 
   KIR62821.1  19 AIENINLTVEPkTVTALIGPSGCGKSTFLRSINR 52 
                  6777777788757899************999876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   7.8e-06    0.0056       1      33 [.      32      82 ..      32     144 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7.8e-06
      AAA_33  1 lvllvGlpGsGKstlaerl...lkklgavllssdt...............l 33
                ++ l+G++G+GKst+++++   ++ l++ +++ d                +
  KIR62821.1 32 VTALIGPSGCGKSTFLRSInrmHEVLPGARVEGDLtidgqniydrdvdvtA 82
                5679************98744466677999999875555555555555553 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-05    0.0085      38      69 ..      23      54 ..      17      86 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-05
       Rad17 38 dvLesrkkriLLisGPsGCgkstvvkvLskel 69
                  L  ++k +  + GPsGCgkst ++ + + +
  KIR62821.1 23 INLTVEPKTVTALIGPSGCGKSTFLRSINRMH 54
                5677788999999************9998876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1     6e-05     0.043      25      46 ..      31      52 ..      20     166 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6e-05
      AAA_16 25 elvllsGesGvGKsslvrellr 46
                 ++ l+G+sG+GKs+ +r++ r
  KIR62821.1 31 TVTALIGPSGCGKSTFLRSINR 52
                67889************99975 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.3e-05     0.038       3      46 ..      34      75 ..      32     104 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.3e-05
         PRK  3 gvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraek 46
                ++ g+SG+Gk+t+ r ++ + +   ++ a +egd  +  +++++
  KIR62821.1 34 ALIGPSGCGKSTFLRSINRMHE--VLPGARVEGDLTIDGQNIYD 75
                788**************98866..78888888887776666554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   9.2e-05     0.066       3      25 ..      35      74 ..      34     139 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.2e-05
      AAA_18  3 ltGtpGvGKttlakeLskrlgf.................g 25
                l G++G+GK+t+ + +++++++                  
  KIR62821.1 35 LIGPSGCGKSTFLRSINRMHEVlpgarvegdltidgqniY 74
                89***************99877787555555555533333 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00013     0.094      27      48 ..      34      55 ..      19      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
                EEEESTTSSHHHHHHHHHHHCS CS
     G-alpha 27 lllGqseSGKsTilkqlkllyk 48
                 l+G s++GKsT+l+++ ++++
  KIR62821.1 34 ALIGPSGCGKSTFLRSINRMHE 55
                589*****************95 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00015      0.11       2      20 ..      32      50 ..      31      55 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00015
                CEEEEC-TTTCHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkl 20
                + +l G++G+GK+t+l+++
  KIR62821.1 32 VTALIGPSGCGKSTFLRSI 50
                57899************99 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00023      0.17      15      40 ..      25      50 ..      17      60 .. 0.78
   2 ?   -2.7   0.0       6.1   4.3e+03     104     131 ..     185     211 ..     172     219 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00023
    ATPase_2 15 lerepneiyfiYGpegsGKtaLlkei 40
                l  ep+++  + Gp g+GK+++l+ i
  KIR62821.1 25 LTVEPKTVTALIGPSGCGKSTFLRSI 50
                455789999**************986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.1
    ATPase_2 104 kaielllekikkkgkkiiiiiDelqkli 131
                  aie+l+ ++k+k + iii+   +q++ 
  KIR62821.1 185 LAIEDLMFQLKDKFT-IIIVTHNMQQAA 211
                 567777777777754.888888888876 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00037      0.27       3      22 ..      35      53 ..      33      83 .. 0.77
   2 ?   -1.8   0.0       5.5     4e+03      50      87 ..     167     205 ..     160     218 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00037
  RNA_helicase  3 lyGpsgeGKStlakeLakal 22
                  l Gpsg+GKSt+ ++ ++++
    KIR62821.1 35 LIGPSGCGKSTFLRS-INRM 53
                  78***********99.4444 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5.5
  RNA_helicase  50 qevvvidDfgqvkdee.npsdlaelirlvsstpyplnma 87 
                   ++vv++d+ ++  d   +  ++  +++l + +++++ + 
    KIR62821.1 167 PQVVLMDEPCSALDPIsTLAIEDLMFQLKDKFTIIIVTH 205
                   567777777777666655557777777776666655554 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00017      0.12      17      45 ..      28      55 ..      18      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
                TSCSEEEEEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC 17 elqslvvalvGmgGvGKttlakqilnksd 45
                e++  v al G  G+GK+t +++i++ ++
  KIR62821.1 28 EPK-TVTALIGPSGCGKSTFLRSINRMHE 55
                555.7889****************99865 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00022      0.16       4      25 ..      32      52 ..      30      88 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00022
      AAA_24  4 kiliyGpsgiGKTtlakelgpk 25
                  +++Gpsg GK+t+++++ ++
  KIR62821.1 32 VTALIGPSGCGKSTFLRSI-NR 52
                6789************998.44 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0011      0.77       3      21 ..      35      53 ..      33      93 .. 0.83
   2 ?    0.4   0.1       1.2   8.4e+02      58      66 ..     166     174 ..     149     218 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0011
                EESSTTSSHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavake 21
                l+Gp G+GK+++ +++ + 
  KIR62821.1 35 LIGPSGCGKSTFLRSINRM 53
                89***********999765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.2
                 TSEEEEEET CS
         AAA  58 kpsilfiDE 66 
                 +p ++++DE
  KIR62821.1 166 EPQVVLMDE 174
                 456666665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00023      0.16      31      50 ..      28      47 ..      21      64 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00023
      AAA_25 31 pagelallaGapgtGKttla 50
                  +++++l+G++g+GK+t++
  KIR62821.1 28 EPKTVTALIGPSGCGKSTFL 47
                56899*************98 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0011      0.77      79     107 ..      21      50 ..       8      60 .. 0.83
   2 ?    0.2   0.0      0.35   2.5e+02     234     250 ..     196     212 ..     158     223 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0011
  Adeno_IVa2  79 sslnyglqP.viGviyGPtGsGksqllrnl 107
                   +n+  +P  +  + GP G+Gks +lr++
  KIR62821.1  21 ENINLTVEPkTVTALIGPSGCGKSTFLRSI 50 
                 5688888885578899************86 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.35
  Adeno_IVa2 234 tgfsvlvvlhnlnPrsd 250
                   f++++v hn++  + 
  KIR62821.1 196 DKFTIIIVTHNMQQAAR 212
                 4699*******987655 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00034      0.25     526     582 ..     166     218 ..     159     254 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00034
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkntk 582
                 + ++v +D P S LD  s   +  l+ +     +k+  ++i THn++    v+++t 
  KIR62821.1 166 EPQVVLMDEPCSALDPISTLAIEDLMFQLK---DKF-TIIIVTHNMQQAARVSDRTA 218
                 789***************999999999995...555.699*****998777777655 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00052      0.37       4      22 ..      35      53 ..      33      63 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00052
                EE--SSSSHHHHHHHGGGG CS
       AAA_5  4 LvGppGtgKselaerlaaa 22
                L+Gp+G+gKs++ +++ ++
  KIR62821.1 35 LIGPSGCGKSTFLRSINRM 53
                9************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 1937.85
//
Query:       KIR62822.1  [L=362]
Description: phosphate ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-27   94.8  13.6    5.3e-27   94.8  13.6    2.2  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   2.8      0.13   2.3e+03      57      57 ..      57      57 ..      18     115 .. 0.59
   2 !   94.8  13.6   2.9e-31   5.3e-27       2     184 ..     155     359 ..     154     360 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.13
  BPD_transp_1 57 i 57
                  +
    KIR62822.1 57 A 57
                  1 PP

  == domain 2  score: 94.8 bits;  conditional E-value: 2.9e-31
  BPD_transp_1   2 illGilaa....lnrnkkldkllrpliivllslPsfv....laillvlvf.......vilsilghlilpviillllsaapyvrlirraalrslpkdl 83 
                   ++lGil+a     + ++++  ++r++++v+ ++Ps+v    +  l +          ++++  g++ ++++++l + ++p+v++ ++++lr +p  l
    KIR62822.1 155 VPLGILCAiyivEYGRGRFAFAIRFFVDVMTGIPSIVsglfV--LAF--WvlvvspvFNDGRPGFSGFAAALALSVLMLPTVVRSTEEMLRLVPAPL 247
                   799******99999999********************66432..322..13466999**************************************** PP

  BPD_transp_1  84 veaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG..lgtllleailgydyseis.........nggvlalviavllln 169
                   +e a+alG+++w+++ +vvlP alp i+tg++la++++ g+++ +++++++++    +++ + +++  +   +          + ++++++ +++l+
    KIR62822.1 248 REGAYALGVPKWKTILRVVLPTALPGIVTGVMLAIARAAGETAPVLLVAGGGAaiNFNPFENNQSSLSLFVYQqagdaskyaPARAWTAALTLVALV 344
                   *************************************************665565444444444444444444999999*99999999999999999 PP

  BPD_transp_1 170 lvadilqrlldprvr 184
                   l++ i ++ll++r r
    KIR62822.1 345 LILTIAAKLLARRNR 359
                   999999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 2280.71
//
Query:       KIR62823.1  [L=363]
Description: phosphate ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-16   59.9  15.1    2.7e-16   59.9  15.1    2.2  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.044   13.7   1.6       0.17   11.8   1.6    2.0  1  Flg_bb_rod    Flagella basal body rod protein
        4.3    7.3  12.0        2.3    8.1   4.8    3.0  2  CoatB         Bacteriophage coat protein B


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   3.0      0.29   1.7e+03      54      76 ..      70      92 ..      58     138 .. 0.68
   2 !   59.9  15.1   4.4e-20   2.7e-16       3     181 ..     143     353 ..     137     357 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.29
  BPD_transp_1 54 lpviillllsaapyvrlirraal 76
                  l++ +++l+ +a+++++++++a+
    KIR62823.1 70 LAAGTAVLVIIAAIAVFLIAKAV 92
                  33444444444444444444444 PP

  == domain 2  score: 59.9 bits;  conditional E-value: 4.4e-20
  BPD_transp_1   3 llGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.....................vilsilghlilpviillllsaapyvrlirraalrs 78 
                   ++++++  +  ++l  +l +li++l ++Ps+v+++    vf                       ++ +g ++l ++++l+++ +p+++ + r+++ +
    KIR62823.1 143 GIALYLSHYAPRRLGTALGFLIDLLAAVPSVVFGLWGRDVFsspvrdfsvwlnthvgwlpifGGDGPFGASVLLGALVLAIMVLPIITSLSREVFLQ 239
                   344444488899********************9999888888888888888888888999889********************************** PP

  BPD_transp_1  79 lpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis............nggvlalvi 163
                    p+  +eaa+alGa+rw+++r+ vlP   p ii+ ++l +g++lg++++l ++++ + ++  +  +++g ++ +++             g+++a ++
    KIR62823.1 240 TPTANEEAALALGATRWEMIRTAVLPYGRPGIIAAVMLGLGRALGETIALAMTLGIT-FNISFNLIQNGGNTIAANianafgeandtgRGALIASGL 335
                   ******************************************************776.888888888888888777999*********888888888 PP

  BPD_transp_1 164 avlllnlvadilqrlldp 181
                   +++ ++l+++i +r++  
    KIR62823.1 336 VLFTITLIVNITARAIIY 353
                   888888888887776654 PP

>> Flg_bb_rod  Flagella basal body rod protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.6   2.9e-05      0.17      16      27 ..     309     320 ..     306     321 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.9e-05
  Flg_bb_rod  16 dvianNiANanT 27 
                 ++ia+NiANa++
  KIR62823.1 309 NTIAANIANAFG 320
                 89********97 PP

>> CoatB  Bacteriophage coat protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.8   0.00038       2.3      24      39 ..      71      86 ..      69      90 .. 0.93
   2 ?    2.0   0.7     0.031   1.8e+02      25      35 ..     216     226 ..     212     227 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00038
       CoatB 24 aiGaaVLvvlVgvavf 39
                a+G aVLv+++++avf
  KIR62823.1 71 AAGTAVLVIIAAIAVF 86
                68*************9 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.031
       CoatB  25 iGaaVLvvlVg 35 
                  Ga+VL+++V+
  KIR62823.1 216 LGALVLAIMVL 226
                 6********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2633.41
//
Query:       KIR62824.1  [L=368]
Description: phosphate ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-62  209.9  10.9    7.5e-62  209.5  10.9    1.0  1  PBP_like_2  PBP superfamily domain
    1.6e-17   64.4  11.2    2.1e-17   64.1  11.2    1.2  1  SBP_bac_1   Bacterial extracellular solute-binding protein
    1.1e-11   44.2   0.0    2.7e-11   43.0   0.0    1.6  1  PBP_like    PBP superfamily domain


Domain annotation for each model (and alignments):
>> PBP_like_2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.5  10.9   1.3e-65   7.5e-62       1     281 [.      39     338 ..      39     339 .. 0.90

  Alignments for each domain:
  == domain 1  score: 209.5 bits;  conditional E-value: 1.3e-65
  PBP_like_2   1 saaaeatsvgeifgaGsttpapalrkladafekaapgakvnyastGSgagikalrngdvdfagsdrplteseia.agwaangaggliqvpvaigaialv 98 
                 saaa++++ g++++ Gs+++++a+ ++++a++++++g ++ny+++GSgagi+a+ +g++dfagsd+ l+ +e   a+++ +g g++i+ p++ig++a++
  KIR62824.1  39 SAAAADCATGTLNAQGSSAQKNAMAEWIKAYQQKCAGSTINYEPSGSGAGIQAFIAGTADFAGSDSALKPEEQPqADAKCTG-GQAIHLPMVIGPVAVA 136
                 57888999999************************************************************99988888888.**************** PP

  PBP_like_2  99 vnkd..nplnlsreaLakIfsgkItnWnd........vlglpadgpIkvvhrsdgsgttflfstalaeq............gpwtasgigasgsegvas 175
                 +n++  ++l+l  ++LakIf+gk+t+W+d         ++lp  + I+ vhrsd+sgtt++f++ la++            ++++ +g+ga+gs+gvas
  KIR62824.1 137 YNVSgvDNLQLKPATLAKIFAGKVTKWDDpaikadnpDAKLP-STTIQTVHRSDESGTTDNFTKFLAKTsaadwtfenakaWKAP-GGTGAKGSDGVAS 233
                 **99566666**************************977777.************************99**55444444333332.4566777****** PP

  PBP_like_2 176 avsn.ngaigyvsvaywlavkgysladvtngagkfvlptaataasalkvakias..nplawslqpveeniadgayPlsrftyiivyqpyayh.gnnaal 270
                 +v++ +g igy +++++++  g+++a++ ngag f + ta++a + +  a++++  ++l+ s++  + +  +gayP++  ty iv++  +++   + +l
  KIR62824.1 234 RVKGaDGSIGYMEWSFAENA-GLKMAKIGNGAGEFAELTAESAGKTIAGATVEGtgDDLKMSVD--YSTKEAGAYPIVLVTYEIVCS--KGLaADKLPL 327
                 **999*************99.*******************************999988888888..66677****************..7775667*** PP

  PBP_like_2 271 akaFldyllsd 281
                 +k+Fl+ ++s 
  KIR62824.1 328 IKGFLAHAAST 338
                 ****9988775 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1  11.2   3.5e-21   2.1e-17       7     314 ..      54     341 ..      47     342 .. 0.85

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 3.5e-21
                 HHHHHHHHHHH....HHHHHTTEEEEEEEECHHHHHH...HHHHHHHTTS........SSCSEEEECGGHHHHHHHT.TSBECCHHHHHHTTECTTCCT CS
   SBP_bac_1   7 gaalqalvaka....fekehpgikVeiesvgsgslaq...kltlaiaaGd........gpaDviavdndwiarlaka.glllpldpyvkaylapgvkda 89 
                 g++ q+ ++++    +++++ g ++++e++gsg+++q   ++t+++a++d        ++aD  ++++       +a  l++ ++p+++ay++ gv+  
  KIR62824.1  54 GSSAQKNAMAEwikaYQQKCAGSTINYEPSGSGAGIQafiAGTADFAGSDsalkpeeqPQADAKCTGG-------QAiHLPMVIGPVAVAYNVSGVD-- 143
                 5555555555555558888*******************************999888887778888832.......3369****************98.. PP

                 EEEEHHHHTHHHHCEEEESEEEEEEEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCT.HCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT. CS
   SBP_bac_1  90 adklsssvlpkildskvlyvPlyaargliYNkdlfekagldppwtWdelveaakklkekgkkp.iggarggsasgtayyfalalakslggkvfdkdgg. 186
                  + l + +l+ki++            g+++               Wd+++++a ++++k +++ i+ +++++ sgt++ f+ +lak +++++  ++++ 
  KIR62824.1 144 NLQLKPATLAKIFA------------GKVT--------------KWDDPAIKADNPDAKLPSTtIQTVHRSDESGTTDNFTKFLAKTSAADWTFENAKa 216
                 88889*********............9999..............******************************************************* PP

                 .............HHCSHHHHS..HHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEE CS
   SBP_bac_1 187 .............gldnpegvt..aatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgv 270
                              g+++++     +++y+++++    ++++lk+++  n  g++a    +a  a+ +i+g +       ++++ +++++ ++  +e g+
  KIR62824.1 217 wkapggtgakgsdGVASRVKGAdgSIGYMEWSF---AENAGLKMAKIGNGAGEFAEL--TAESAGKTIAGATV------EGTGDDLKMSVDYSTKEAGA 304
                 *********999999999998899999999999...5666**************855..55688888888877......77777777777777777777 PP

                 ECEEBETTTTSEEEEEEEEEEBTTCSTHHH..HHHHHHHHTSHHHH CS
   SBP_bac_1 271 aplPagkggkpgilgayglaipkgsknpea..AkkFldfllspeaq 314
                  p+          l++y ++ +kg +  +   +k Fl+ ++s e+q
  KIR62824.1 305 YPIV---------LVTYEIVCSKGLAADKLplIKGFLAHAASTEGQ 341
                 6643.........588889999998888889999999999999998 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   4.5e-15   2.7e-11       3     164 ..      68     258 ..      66     268 .. 0.81

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 4.5e-15
                 HHHHH-TTCEEEEEES-HHHHHHHHHTTS-SEEEESS---CCCHHCCCCC....EEEEEEEEEEE..E-CC-HCHCCCCHCCHHH........S--BGG CS
    PBP_like   3 elaeknpgvrvavanvGsggGlkalrageadiagshlldketeeynapal....rkaldgievvl..vnlarreqglvvakgnpk........kitnwk 87 
                 ++++k  g ++++  +Gsg+G++a+ ag+ad ags+   k +e+ +a a     +    ++++v+  v +a+   g+ + + +p         k+t+w 
  KIR62824.1  68 AYQQKCAGSTINYEPSGSGAGIQAFIAGTADFAGSDSALKPEEQPQADAKctggQ--AIHLPMVIgpVAVAYNVSGVDNLQLKPAtlakifagKVTKWD 164
                 68899999*****************************999888866665522322..2233445577*****************977777777699998 PP

                 GC...........-S-B-EEEEE-TTSHHHHHHHHHHC-CEECT.........E-SSTTSEEESSHHHHHCCHCCETTCCECCCGG-HCCCCCCECT CS
    PBP_like  88 dl...........adaplrlvnRetGSGtrdlfdellkkegisk.........ssikgyaqearshlavaaaVaagradvgvgieavaeelkgldfv 164
                 d            ++  ++ v R   SGt d f++ l+k+ ++          +++ g  + a+ ++ va+ V+  ++ +g+   + ae++ gl+  
  KIR62824.1 165 DPaikadnpdaklPSTTIQTVHRSDESGTTDNFTKFLAKTSAADwtfenakawKAPGG--TGAKGSDGVASRVKGADGSIGYMEWSFAENA-GLKMA 258
                 876676665544466**********************999887799999998655555..68*******************9888888776.88765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2643.67
//
Query:       KIR62825.1  [L=307]
Description: mycothiol acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-24   85.2   0.1    6.3e-16   58.7   0.0    2.1  2  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.2e-13   51.0   0.0    2.4e-08   34.0   0.0    2.1  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
    5.9e-13   49.0   0.1    4.3e-06   27.1   0.0    2.2  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.4e-10   41.0   0.1    1.1e-06   28.6   0.0    2.3  2  FR47             FR47-like protein
    2.2e-09   38.1   0.0    7.9e-07   29.8   0.0    2.2  2  Acetyltransf_3   Acetyltransferase (GNAT) domain
    2.4e-05   24.4   0.6       0.15   12.2   0.0    2.4  2  Acetyltransf_CG  GCN5-related N-acetyl-transferase
    0.00013   22.0   0.5       0.71   10.0   0.1    2.7  2  Acetyltransf_9   Acetyltransferase (GNAT) domain
    0.00021   21.0   0.2    0.00092   18.9   0.0    2.0  2  Acetyltransf_8   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   9.4e-09   2.1e-05      18      91 ..      43     112 ..      25     130 .. 0.73
   2 !   58.7   0.0   2.8e-19   6.3e-16      13     117 .]     188     295 ..     174     295 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 9.4e-09
                     HHHHHHHHHHHHSTTC..EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHH CS
  Acetyltransf_1  18 daseeefeesfsleae..gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerare 91 
                     + ++ + ++    +a+  +l +   dg l G++ l   ++     ++  +laV+p++r++G G+aL ++++  a  
      KIR62825.1  43 EHTLLRLRDP---HAPavHLTARAPDGALTGYAHLDTTDP---AGGVGVELAVHPAHRRRGTGRALAREALAAATG 112
                     4444444444...444435555777899*****9999999...6677778********************987755 PP

  == domain 2  score: 58.7 bits;  conditional E-value: 2.8e-19
                     HHHHHHHHHHH.HHHHHHSTTCEEEE.EEETTEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETT CS
  Acetyltransf_1  13 fppnedaseee.feesfsleaegllv.aeedgeliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveed 104
                        +  +++++  +e ++++a++ll+ a + g+l+Gf   +      + g ++++ l V+p+++g GlG+aL  a + ++r++g+++++l+v+e+
      KIR62825.1 188 QGRWTADDLRVrLAEPWFDPAGFLLAvAADTGRLLGFHWTKVHSRpGAAGIGEVYVLGVDPAAHGGGLGKALTSAGLAYLRRRGLDRVMLYVDES 282
                     3556666666666666899999666659999*******665555576778888889999************************************ PP

                     EHHHHHHHHHTTE CS
  Acetyltransf_1 105 ndaairlYeklGF 117
                     n++a++lYe+ GF
      KIR62825.1 283 NTGAVALYERAGF 295
                     ************9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.6e-06     0.017      31      80 ..      57     110 ..      35     116 .. 0.79
   2 !   34.0   0.0   1.1e-11   2.4e-08      30     108 ..     209     297 ..     190     303 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.6e-06
  Acetyltransf_10  31 alllvaeeggkivGvielrdgs....hisllfVdpeyrgqGigkaLleaveeea 80 
                      ++l +   +g + G++ l++++        l+V+p++r++G g+aL  +++++a
       KIR62825.1  57 VHLTARAPDGALTGYAHLDTTDpaggVGVELAVHPAHRRRGTGRALAREALAAA 110
                      5555556678888999886665577666679****************9998876 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 1.1e-11
  Acetyltransf_10  30 ealllvaeeggkivGvielrdgs........hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFka 108
                        ll va + g+++G+  ++ +s        +++ l Vdp+++g G+gkaL  a +++++++g+    l v++s+  av++Ye+ GF +
       KIR62825.1 209 GFLLAVAADTGRLLGFHWTKVHSrpgaagigEVYVLGVDPAAHGGGLGKALTSAGLAYLRRRGLDRvMLYVDESNtGAVALYERAGFAR 297
                      5667788899999999955555555789999999*******************************9*********9***********87 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.1e-07    0.0007      16      48 ..      70     105 ..      50     137 .. 0.73
   2 !   27.1   0.0   1.9e-09   4.3e-06       7      75 ..     214     296 ..     204     297 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.1e-07
                     EEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH CS
  Acetyltransf_7  16 Gfialslld...aeitrlaVdpeyrgkGiGraLlea 48 
                     G++ l  +d   +   +laV+p++r++G GraL + 
      KIR62825.1  70 GYAHLDTTDpagGVGVELAVHPAHRRRGTGRALARE 105
                     66666666664333344****************984 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 1.9e-09
                     EEEETTEEEEEEEEEEES....TCTEE...EEE-GGGTTSSHHHHHHHH.....TTSEEEEE.EEEE..THHHHHHHHHHTTEE CS
  Acetyltransf_7   7 VaeddgkivGfialslld....aeitr...laVdpeyrgkGiGraLlea.....aekgiile.qlel..naekaikfYeklGFe 75 
                     Va d g+ +Gf   ++++    a i++   l Vdp+++g G+G+aL  a     +++g+     l++  +++ a+++Ye+ GF 
      KIR62825.1 214 VAADTGRLLGFHWTKVHSrpgaAGIGEvyvLGVDPAAHGGGLGKALTSAglaylRRRGLD-RvMLYVdeSNTGAVALYERAGFA 296
                     77777888888776666688874444544578**************99754443226633.2223443233499*********6 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00026      0.58      26      45 ..      86     105 ..      72     125 .. 0.85
   2 !   28.6   0.0   4.7e-10   1.1e-06      21      79 ..     238     297 ..     233     304 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00026
                 EEEE-GGG-SSSHHHHHHHH CS
        FR47  26 alqvlpehrrrGlgsrlvka 45 
                  l v+p hrrrG g+ l+++
  KIR62825.1  86 ELAVHPAHRRRGTGRALARE 105
                 589**************986 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 4.7e-10
                 TSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-.S-EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  21 ggelgalqvlpehrrrGlgsrlvkalakeiaerg.ktvllvvvasNtpsirlyeklGfek 79 
                 +ge++ l v+p + + Glg+ l++a  + +++rg + v+l+v +sNt + +lye+ Gf  
  KIR62825.1 238 IGEVYVLGVDPAAHGGGLGKALTSAGLAYLRRRGlDRVMLYVDESNTGAVALYERAGFAR 297
                 599*****************************995679********************76 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0059        13      61     108 ..      63     110 ..      21     139 .. 0.78
   2 !   29.8   0.0   3.5e-10   7.9e-07      11     137 ..     173     295 ..     160     296 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0059
  Acetyltransf_3  61 kdtgv.iGsvglrdleeedeeaelgymlapsfwgkGyateavralleya 108
                      ++g+  G++ l   ++  + + +++ ++p+++++G ++  +r +l +a
      KIR62825.1  63 APDGAlTGYAHLDTTDPAGG-VGVELAVHPAHRRRGTGRALAREALAAA 110
                     44455599999999999988.999999****999998888888777766 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 3.5e-10
  Acetyltransf_3  11 Dleal.f.elrsdpevmrylpepltleeaeewlerawaeeseeegygwaivlkdtgv.iGsvglrdleeedee...aelgymla..psfwgkGya 97 
                     D  al + +++s+pe  r++  +l +  ae w+++         g+ +a+   dtg  +G+   ++++ ++++   +e+  +l+  p+++g G++
      KIR62825.1 173 DWLALnArAFASHPEQGRWTADDLRVRLAEPWFDP--------AGFLLAV-AADTGRlLGFH-WTKVHSRPGAagiGEVY-VLGvdPAAHGGGLG 256
                     333443334899*******9999999999***995........6898999.57776558876.33344444442336665.444437899***** PP

  Acetyltransf_3  98 teavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     +  ++a l y+ ++ gl+r++  +d++N++ ++++e++Gf
      KIR62825.1 257 KALTSAGLAYL-RRRGLDRVMLYVDESNTGAVALYERAGF 295
                     ***********.7777***********************9 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00027      0.61      31      53 ..      88     110 ..      65     112 .. 0.91
   2 !   12.2   0.0   6.9e-05      0.15      28      58 ..     242     272 ..     230     278 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00027
  Acetyltransf_CG  31 eVpeelrGkGiAkkLvkaaldda 53 
                       V++++r++G +++L+++al  a
       KIR62825.1  88 AVHPAHRRRGTGRALAREALAAA 110
                      699*****************987 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 6.9e-05
  Acetyltransf_CG  28 thTeVpeelrGkGiAkkLvkaalddareegl 58 
                      +   V+++  G G++k+L+ a l + r++gl
       KIR62825.1 242 YVLGVDPAAHGGGLGKALTSAGLAYLRRRGL 272
                      5667*************************98 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00032      0.71      73     101 ..      80     109 ..      72     112 .. 0.82
   2 !    9.3   0.1    0.0005       1.1      61     125 ..     226     295 ..     169     297 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00032
                     EEEE.EEEEE-CCGTTS-HHHHHHHHHHHH CS
  Acetyltransf_9  73 aagv.tgVavapehrgrgvlskLlaralee 101
                     a+gv +  av+p hr+rg  ++L ++al+ 
      KIR62825.1  80 AGGVgVELAVHPAHRRRGTGRALAREALAA 109
                     55552468*****************99975 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0005
                     EEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--.....SSHHHHHTTT- CS
  Acetyltransf_9  61 plelnvpGktlkaagvtgVavapehrgrgvlskLlaraleemreegqplsllfP.....ssipiYrrfGy 125
                     + +++ +     ++ v+  +v+p   g g+ ++L+ + l+++r +g   ++l+       ++++Y+r G+
      KIR62825.1 226 WTKVHSRPGAAGIGEVYVLGVDPAAHGGGLGKALTSAGLAYLRRRGLDRVMLYVdesntGAVALYERAGF 295
                     44444444455567788889*********************************98765544799999998 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.49   1.1e+03      77     105 ..      80     107 ..      60     111 .. 0.76
   2 !   18.9   0.0   4.1e-07   0.00092      86     141 ..     244     299 ..     207     302 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.49
                     TT-EEEEEEESSHHHCTTTCHHHHHHHHH CS
  Acetyltransf_8  77 pgdrGiHlligeaeargkglttallralv 105
                      g +G+ l++  +++r++g ++al r+ +
      KIR62825.1  80 AGGVGVELAVH-PAHRRRGTGRALAREAL 107
                     46688888886.66778899999888765 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 4.1e-07
                     ES.SHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEE CS
  Acetyltransf_8  86 ig.eaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekek 141
                     +g +++a+g gl++al +a ++yl ++ + +rv++  d +N+ a++l+e+aGf+++ 
      KIR62825.1 244 LGvDPAAHGGGLGKALTSAGLAYLRRR-GLDRVMLYVDESNTGAVALYERAGFARWS 299
                     44588999***************9887.*************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2187.26
//
Query:       KIR62826.1  [L=294]
Description: polysaccharide deacetylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-29  102.7   0.0    1.8e-29  102.2   0.0    1.2  1  Polysacc_deac_1  Polysaccharide deacetylase
  ------ inclusion threshold ------
      0.075   13.1   1.1       0.13   12.4   1.1    1.3  1  DUF4719          Domain of unknown function (DUF4719)


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.0     2e-33   1.8e-29       4     122 ..     103     224 ..     100     226 .. 0.95

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 2e-33
                      TTSTEEEEEEEESS.CSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--EG.GGSHHHHHHHHHHHHHHHHHHHHS CS
  Polysacc_deac_1   4 kgkksvalTfDdgp.rdntteilpvLkkykvkatffvigglvedypdevremaasGveignHtinhsnl.krlseeevrreierakdalrkalg 95 
                      +g   valTfDdgp +++t+++l +L++y+v atf+v+g++++++pd++++++a+G+++ nH+++h+ l  + s++ +r+++ r++ a+r+a+ 
       KIR62826.1 103 TGSAQVALTFDDGPdPQYTPQVLALLREYGVTATFCVVGENAQSHPDLIQAIVADGHTLCNHSWHHDELlGKRSTDVIRADLLRTNAAIRAAVP 196
                      677789********99***************************************************997888888****************** PP

                      -.---EEE-GGGEE-HHHHHHHHHTT.E CS
  Polysacc_deac_1  96 r.eprlfryPygsasatvlevarelgfa 122
                      + e  ++r P+g+++  v+ va+elg+ 
       KIR62826.1 197 DaEIAYYRQPGGAWTYPVVSVAEELGLV 224
                      *9************************85 PP

>> DUF4719  Domain of unknown function (DUF4719)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.1   1.5e-05      0.13      28     118 ..       4      94 ..       2     112 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.5e-05
     DUF4719  28 dnvgwfvrklsgllillvlfaigyflqriicpsprrynrrqarpgqrpg...ppggagplggarrpdddddspallrdeaa.atsqdslldssgs 118
                 d  g fv  l+  l+++ l+   y l r ++p p r + + + +++ p+    p+ +gp  g  +p  + d pa    ea   +      +s+g 
  KIR62826.1   4 DATGRFVA-LAT-LVVVSLLGSAYALGRSMVPGPTRQATGITASADDPSfadQPAQTGPGRGGAPP-SSADGPAAPT-EAGqDGGTAQSPESGGD 94 
                 55666664.443.5667788899***************9988887777522278999***999999.8999999877.43302333233334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2120.38
//
Query:       KIR62827.1  [L=237]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.7e-29   99.3   0.0    1.5e-28   98.7   0.0    1.3  1  Trans_reg_C  Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   8.4e-33   1.5e-28       1      77 []     145     219 ..     145     219 .. 0.95

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 8.4e-33
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  g++++lt kef+lL++L+++pgrv++r++Ll+evwg+d+++ +rtvdvh++rLR kL+  e  +++I tvr vGY++
   KIR62827.1 145 GRPLDLTYKEFELLKFLAQHPGRVFTRDQLLREVWGYDYFGGTRTVDVHVRRLRAKLGS-EY-ESMIGTVRQVGYKF 219
                  6899*******************************************************.44.55**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1632.92
//
Query:       KIR62828.1  [L=350]
Description: hypothetical protein TK50_17940 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.062   12.6   0.5      0.083   12.1   0.5    1.3  1  Zincin_2         Zincin-like metallopeptidase
        6.7    6.7  19.5        1.3    8.9   1.0    4.3  4  Rick_17kDa_Anti  Glycine zipper 2TM domain


Domain annotation for each model (and alignments):
>> Zincin_2  Zincin-like metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5   9.2e-06     0.083      90     140 ..     247     297 ..     175     329 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.2e-06
                 ----------HHHHHHHHHHHHHHHHTT--BTTSSH---.---EEEE-HHH CS
    Zincin_2  90 elaallrqvggavfgaqvGqalgeLssevlgqtdvglplapegrllLvapn 140
                 +  +l+ qv + ++g+ +G+++g+L+s vlg++ v  + +++  + Lv++ 
  KIR62828.1 247 PWPRLAPQVPRGAAGVVIGAMVGTLASAVLGSFLVSFTPTSGAVIGLVTAA 297
                 66778889999**********************999555555555555443 PP

>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2   0.00087       7.8       8      29 ..      96     117 ..      96     117 .. 0.91
   2 ?    2.4   1.1     0.016   1.4e+02       4      19 ..     171     186 ..     168     208 .. 0.81
   3 ?    8.9   1.0   0.00015       1.3      19      38 ..     258     277 ..     253     280 .. 0.60
   4 ?   -1.1   0.4       0.2   1.8e+03      10      15 ..     288     293 ..     286     299 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00087
  Rick_17kDa_Anti   8 aaGgvaGaaigggggrvlGavv 29 
                      ++G v+Ga+ +g+g+r+ +a++
       KIR62828.1  96 GVGLVLGAQTAGPGHRLPFALI 117
                      59**************998886 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.016
  Rick_17kDa_Anti   4 liGAaaGgvaGaaigg 19 
                      ++G+ + gv+G ++++
       KIR62828.1 171 AAGGFLLGVLGQLVRR 186
                      79*********99954 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00015
  Rick_17kDa_Anti  19 ggggrvlGavvGAaaGavaG 38 
                      g  g v+Ga vG +a av+G
       KIR62828.1 258 GAAGVVIGAMVGTLASAVLG 277
                      44555666666666666666 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.2
  Rick_17kDa_Anti  10 GgvaGa 15 
                      G+v+G 
       KIR62828.1 288 GAVIGL 293
                      444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2588.23
//
Query:       KIR62829.1  [L=262]
Description: hypothetical protein TK50_17945 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-32  113.1  12.6    2.4e-32  112.9  12.6    1.0  1  DUF2993   Protein of unknown function (DUF2993)


Domain annotation for each model (and alignments):
>> DUF2993  Protein of unknown function (DUF2993)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9  12.6   1.3e-36   2.4e-32       1     211 [.      40     251 ..      36     252 .. 0.86

  Alignments for each domain:
  == domain 1  score: 112.9 bits;  conditional E-value: 1.3e-36
     DUF2993   1 vadrgaaavaeqriatelrsqlelaedpeVsiggfPfltqllaGeldsvsvaargvvv..dgpglriesveltledvrldlsdilgkvrlvpvgrltat 97 
                 va  +a++ +++++++e+  q  ++ +peV++ggfPfltq+l+G+++++s+++r+v+   +g ++++ ++ +++++vr++l+ ++ + ++v ++++ +t
  KIR62829.1  40 VAAGVAERAITDQVSQEITKQGAQSSPPEVEVGGFPFLTQVLDGRYERISIRLRDVRGsvNGDAVALPELNVDARNVRASLETLRTQQGDVVAETVNGT 138
                 345556666666677777666688********************************986678888899**************98789************ PP

     DUF2993  98 vtlteadlnralasp.....llitdlqdlsnggvkltgnnlpvvveaglrlaagdg.qlrleltdle.aglglpesavdlpaelldalleglselldlp 189
                  t+t++ l + l+ p     +++     ++++ v+++g+  ++++++++++ +g + +++l++ d++  gl++     +l++ ll+  ++ +s  ++lp
  KIR62829.1 139 GTITYESLAALLNRPgltlgERDGR--LAVTAPVDILGQ--KLTLTGTADVTVGKEgAISLRFNDVDaEGLPN----IPLARTLLSNYAKDISIDVPLP 229
                 *************998875543444..4899*******7..8*******99555555**********888888....5566777*************** PP

     DUF2993 190 glpfglrltevrvtdgglrltg 211
                 +lpf+l+++ev+  ++gl +t+
  KIR62829.1 230 DLPFQLAVREVKPLPQGLAVTA 251
                 *******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1937.81
//
Query:       KIR62830.1  [L=282]
Description: thiosulfate sulfurtransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-36  125.2   0.3    1.2e-17   64.4   0.0    2.1  2  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.1   2.6e-20   4.6e-16       1     106 [.       9     118 ..       9     119 .. 0.82
   2 !   64.4   0.0   6.6e-22   1.2e-17       3     105 ..     149     266 ..     147     268 .. 0.92

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 2.6e-20
   Rhodanese   1 sakelkellekgkvallDvR.ppeeYekghIpgAvnv.skdtlsrakkseapllelpeellel.gidnkktvvvycdgggr.aaaaaallkklGyknvs 95 
                 sa+++++++++++v+++ v  +  +Y++ghI gA+ +  ++ l ++ +++   + ++e+ll++ gi+n++ vv+y+ +++  aa a++ +k +G+ +v+
  KIR62830.1   9 SAEWAEKNIDAPGVVFVEVDeDTSAYDTGHIAGAIKLdWRTDLQDPVRRDFVNKSQFEALLSErGISNDDVVVLYGGNNNWfAAYAYWYFKLYGHRDVK 107
                 699*****************66666************333334444444445555666666669*****************9999999******666** PP

   Rhodanese  96 vldGGfkawke 106
                 +ldGG k+w  
  KIR62830.1 108 LLDGGRKKWEL 118
                 *********86 PP

  == domain 2  score: 64.4 bits;  conditional E-value: 6.6e-22
   Rhodanese   3 kelkellekgkvallDvRppeeY................ekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaal 85 
                 +e+++ +++++  l+DvR+p+e+                 +ghIp A++v++ ++ +++ + ++++el + +++ g+d+ k+ + yc+ g+r++ ++  
  KIR62830.1 149 DEVVAAIGTKN--LVDVRSPDEFagrllapahlpqeqaqRAGHIPTAISVPWSKAANEDGTFKSDDELRKIYAAAGLDDSKETIAYCRIGERSSHTWFV 245
                 68999999998..**********9999999999999995559********9999999999999999999999999*****************9999998 PP

   Rhodanese  86 lkk.lGyknvsvldGGfkawk 105
                 l++ lG+ nv+++dG+++++ 
  KIR62830.1 246 LQElLGHANVKNYDGSWTEYG 266
                 8877**999*********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2291.33
//
Query:       KIR62831.1  [L=110]
Description: hypothetical protein TK50_17955 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-41  139.6   0.5    2.6e-41  139.4   0.5    1.0  1  DUF1416          Protein of unknown function (DUF1416)
    1.6e-09   37.9   3.7    2.3e-09   37.4   3.7    1.2  1  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
     0.0012   18.9   0.2     0.0015   18.5   0.2    1.2  1  bMG3             Bacterial alpha-2-macroglobulin MG3 domain
     0.0053   17.0   0.1     0.0098   16.1   0.1    1.5  1  SdrD_B           SdrD B-like domain
  ------ inclusion threshold ------
       0.13   12.4   0.0       0.18   12.0   0.0    1.3  1  UDP-g_GGTase     UDP-glucose:Glycoprotein Glucosyltransferase
        3.4    8.0   7.6      0.083   13.2   0.5    2.2  3  Big_6            Bacterial Ig domain


Domain annotation for each model (and alignments):
>> DUF1416  Protein of unknown function (DUF1416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.4   0.5   8.7e-45   2.6e-41       1      97 []      12     108 ..      12     108 .. 0.98

  Alignments for each domain:
  == domain 1  score: 139.4 bits;  conditional E-value: 8.7e-45
     DUF1416   1 CgapkqgaelpagvdvekeaviqGkvtr.dgepvggayvRLLdssgeFtaevvtsaeGefrFfaapGeWtvRalarkgngdaeveaesggvaevevav 97 
                 C+ap+q+a lpa++d+eke+vi+G v + +g++v+gayvRLLds+geFtaevvts++G+frFfaapG+Wt+Ral+r+gngd++v+a  +gv+ev+v+v
  KIR62831.1  12 CAAPDQAAPLPASLDLEKETVITGAVRSeAGDAVAGAYVRLLDSTGEFTAEVVTSPAGQFRFFAAPGTWTLRALSRHGNGDTTVTA-ARGVNEVTVTV 108
                 **************************9989********************************************************.789*****997 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   3.7   7.7e-13   2.3e-09       2      79 ..      33     106 ..      32     109 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 7.7e-13
  CarboxypepD_reg   2 isGrVtdasgapiagatVtvtnadtgtvastttdadGafrlrglppgtysvtv.sapGyatatreevtltagqtttldi 79 
                      i+G V+++ g ++aga V++ ++ ++++a+++t + G+fr+ + +pgt ++++ s++G   +t++    +  + +++++
       KIR62831.1  33 ITGAVRSEAGDAVAGAYVRLLDSTGEFTAEVVTSPAGQFRF-FAAPGTWTLRAlSRHGNGDTTVT---AAR-GVNEVTV 106
                      99********************9999***************.7999*******888888888864...332.2333443 PP

>> bMG3  Bacterial alpha-2-macroglobulin MG3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2     5e-07    0.0015      24      81 ..      41     105 ..      26     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 5e-07
        bMG3  24 sgkPvagaeVrlldkkgevlaegtTDaqGvarfaallar......gkegaapylvsAr.kdedla 81 
                  g++vaga Vrlld +ge  ae  T+ +G  rf a   +      +++g+    v+A  + ++++
  KIR62831.1  41 AGDAVAGAYVRLLDSTGEFTAEVVTSPAGQFRFFAAPGTwtlralSRHGNGDTTVTAArGVNEVT 105
                 699*****************************988755567777755555555555543566655 PP

>> SdrD_B  SdrD B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   3.3e-06    0.0098      21      80 ..      42     102 ..      34     109 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.3e-06
      SdrD_B  21 ekgisgvtVtLkdakgevvatttTdasGkYkFtnltpGeYkVeftapagy..tvtakkaGsd 80 
                  ++++g  V+L d++ge +a+++T+  G+++F   +pG+++++  + +g   t+ ++  G++
  KIR62831.1  42 GDAVAGAYVRLLDSTGEFTAEVVTSPAGQFRFF-AAPGTWTLRALSRHGNgdTTVTAARGVN 102
                 478*****************************8.6899999998764444225555555655 PP

>> UDP-g_GGTase  UDP-glucose:Glycoprotein Glucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.9e-05      0.18      10      54 ..      42      85 ..      35     106 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.9e-05
                  ----TT-EEEEE-SS-S-SEEEE--SGGGEEEEEE-SEEEEEEE- CS
  UDP-g_GGTase 10 kspprGlqleLgtekkksvaDTivmanlGYfQlkanPGvwklelr 54
                  +++ +G+ ++L  ++ +  +  +v +  G f + a PG+w+l+  
    KIR62831.1 42 GDAVAGAYVRLLDSTGEF-TAEVVTSPAGQFRFFAAPGTWTLRAL 85
                  566778888886666555.666899999**************864 PP

>> Big_6  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.9       2.6   7.8e+03       1       8 [.       3      10 ..       3      18 .. 0.74
   2 ?   13.2   0.5   2.8e-05     0.083      18      50 ..      41      73 ..      22     101 .. 0.88
   3 ?   -1.1   0.0      0.76   2.3e+03      29      29 ..      95      95 ..      76     109 .. 0.48

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.6
       Big_6  1 APeaptdl 8 
                AP+apt  
  KIR62831.1  3 APTAPTAA 10
                89999875 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.8e-05
       Big_6 18 tGkaeagatVtvkdadgtvlgtgtadadGeFsv 50
                +G+a aga V++ d+ g+ +++++ + +G+F++
  KIR62831.1 41 AGDAVAGAYVRLLDSTGEFTAEVVTSPAGQFRF 73
                79*****************************86 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.76
       Big_6 29 v 29
                v
  KIR62831.1 95 V 95
                1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 909.73
//
Query:       KIR62832.1  [L=84]
Description: hypothetical protein TK50_17960 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       177  (0.00987227); expected 358.6 (0.02)
Passed bias filter:                      143  (0.0079759); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 726.26
//
Query:       KIR62833.1  [L=98]
Description: hypothetical protein TK50_17965 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-07   31.1   0.0    2.4e-07   30.9   0.0    1.1  1  DivIVA    DivIVA protein
  ------ inclusion threshold ------
      0.027   14.2   0.0      0.038   13.7   0.0    1.2  1  DivIC     Septum formation initiator


Domain annotation for each model (and alignments):
>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   2.7e-11   2.4e-07       4      58 ..      33      87 ..      30      90 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.7e-11
                HHHHH----EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTXXXX CS
      DivIVA  4 lDIknkeFkkklrGYdedeVdeFLdqvakdyeallkeneelkekvkeleeklkey 58
                 ++++++F +  rG d++eVd +L  +a+++ al+ e ++ +e+ ++ + +l + 
  KIR62833.1 33 TQVRQQRFGRCRRGLDPAEVDGYLRRIADELAALHAELDRTREENARIKGALRDW 87
                6789******************************************999988776 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.3e-06     0.038      20      52 ..      57      89 ..      55      96 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.3e-06
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC 20 kqlkqeiaalqaelaklkaeneeLeaevkdLks 52
                +++  e+aal ael++ ++en++ +  ++d++s
  KIR62833.1 57 RRIADELAALHAELDRTREENARIKGALRDWQS 89
                57889**************************64 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 769.82
//
Query:       KIR62834.1  [L=79]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-15   56.3   0.0      2e-15   56.2   0.0    1.0  1  GntR          Bacterial regulatory proteins, gntR family
      0.002   17.8   0.0     0.0028   17.4   0.0    1.2  1  HTH_DeoR      DeoR-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.024   14.4   0.0      0.037   13.8   0.0    1.3  1  MerR          MerR family regulatory protein
      0.045   13.2   0.0       0.14   11.6   0.0    1.7  2  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
        0.1   13.0   0.0       0.12   12.8   0.0    1.1  1  Rrf2          Transcriptional regulator
       0.18   11.5   0.0       0.24   11.1   0.0    1.3  1  HTH_41        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   6.8e-19     2e-15       4      64 .]       9      69 ..       6      69 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 6.8e-19
                HHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  4 qvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                +++ ++  d++sg+l+pGdkLPs  eL++   Vs++t+R +  rLea  ++ r+qg+G+fV
  KIR62834.1  9 KIANEIMSDVRSGRLKPGDKLPSIAELCELHRVSASTIRLVFVRLEALEVIDRHQGKGVFV 69
                7999********************************************************9 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   9.4e-07    0.0028      16      50 ..      31      65 ..      25      71 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 9.4e-07
    HTH_DeoR 16 sveelvellgvSeaTiRRDLneLeeqglltRthGG 50
                s+ el+el  vS  TiR  +  Le+  ++ R+ G 
  KIR62834.1 31 SIAELCELHRVSASTIRLVFVRLEALEVIDRHQGK 65
                799*****************************995 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.2e-05     0.037       1      17 [.      31      47 ..      31      48 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
                EHHHHHHHHTTTHHHHH CS
        MerR  1 tIgevAeltGvsprtLR 17
                +I e++el  vs++t+R
  KIR62834.1 31 SIAELCELHRVSASTIR 47
                79**************9 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.7e-05      0.14      29      50 ..      31      52 ..      27      53 .. 0.91
   2 ?   -1.3   0.0       0.5   1.5e+03       1      11 [.      54      64 ..      54      65 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.7e-05
  HTH_Tnp_ISL3 29 svkavArqlgvSwtTVwrildr 50
                  s+++ +++++vS++T++ +++r
    KIR62834.1 31 SIAELCELHRVSASTIRLVFVR 52
                  899**************99988 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.5
  HTH_Tnp_ISL3  1 eelPwarrrsr 11
                  e+l+ ++r+++
    KIR62834.1 54 EALEVIDRHQG 64
                  67899999997 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.9e-05      0.12       7      62 ..       8      66 ..       3      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.9e-05
                HHHHHHHHHHH...HHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT- CS
        Rrf2  7 teyalhallyL...akeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkg 62
                +++a  ++ +     ++++++  s++e+ e + +s+s ++ ++ +L+  +++   +Gkg
  KIR62834.1  8 FKIANEIMSDVrsgRLKPGDKLPSIAELCELHRVSASTIRLVFVRLEALEVIDRHQGKG 66
                66777777777544568899999**********************************93 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.1e-05      0.24       1      33 [.      24      56 ..      24      65 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.1e-05
      HTH_41  1 kvGdRlktIeelakeleLSvGlvQkALklLedd 33
                k Gd+l++I el++   +S  ++      Le+ 
  KIR62834.1 24 KPGDKLPSIAELCELHRVSASTIRLVFVRLEAL 56
                56***********99999888887666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 631.52
//
Query:       KIR62835.1  [L=196]
Description: DinB-like protein, PF04978 family [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-46  158.7   0.4      2e-46  158.1   0.4    1.3  1  DUF664    Protein of unknown function (DUF664)
    4.5e-11   43.4   2.3    4.5e-11   43.4   2.3    1.6  2  DinB_2    DinB superfamily
  ------ inclusion threshold ------
       0.94    9.8   2.7        2.4    8.6   2.7    1.7  1  Tad       Putative Flp pilus-assembly TadE/G-like


Domain annotation for each model (and alignments):
>> DUF664  Protein of unknown function (DUF664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.1   0.4   3.3e-50     2e-46       1     150 []       9     160 ..       9     160 .. 0.98

  Alignments for each domain:
  == domain 1  score: 158.1 bits;  conditional E-value: 3.3e-50
                 HHHHHHHHHHHHHHHHHTT--GGGTT--BTTB-S-HHHHHHHHHHHHHHHHHHHTT-S---TTTSHH..TTTSSS---SS---HHHHHHHHHHHHHHHH CS
      DUF664   1 tLeafLdrqretllakleGLsdeqarrravpsstsllgLvkHvaevErgwfrrvlggeeevpldrsa..adpdadfelaedetladllaeyrravarad 97 
                 +L+++L+ +re+ll+kl+GLs+ ++rr+++p++t+llgLvkH+a+vE g+f+ ++g++ ++  ++ +   dp+ad++++ de+ ++l+a yrra+a+ad
  KIR62835.1   9 DLHRYLRGAREALLWKLDGLSEYDIRRPVTPTGTNLLGLVKHLAGVEFGYFGPTFGRPHDESMPWLDsdIDPNADMWATADESREQLVALYRRAWAHAD 107
                 599*******************************************************999998888789***************************** PP

                 HHHTT--HHHHTSB-T-.......SBHHHHHHHHHHHHHHHHHHHHHHHHHH-X CS
      DUF664  98 avvaaeldldetvrvpkapwgee.vslrwvlvhlieetarHaGhadilRelidG 150
                 a+++ +l+ld+ ++vp++p+g + ++l+ vlvh+ +e  rHaGhadi+Re idG
  KIR62835.1 108 ATIE-ALPLDAIGTVPWWPAGSNrLTLHGVLVHVTAESHRHAGHADIVRETIDG 160
                 ****.**************99999*****************************9 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   2.3   7.5e-15   4.5e-11       2     127 ..      14     150 ..      13     151 .. 0.82
   2 ?   -1.2   0.1      0.46   2.8e+03      70      87 ..     178     191 ..     155     196 .] 0.54

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 7.5e-15
      DinB_2   2 lerararllalledlteeelnrqpspgkwsiawllaHlgnveelllerlrgeeap.........rpgldpltp..........psaaealaylaevrar 81 
                 l+ ar++ll+ l++l+e + +r+  p ++++  l+ Hl+ ve +++   +g++++         +       +           s+++++a +++ +a+
  KIR62835.1  14 LRGAREALLWKLDGLSEYDIRRPVTPTGTNLLGLVKHLAGVEFGYFGPTFGRPHDesmpwldsdI-------DpnadmwatadESREQLVALYRRAWAH 105
                 7789***********************************************88876655554331.......033335555558999999999999999 PP

      DinB_2  82 llallealtdadldrpltaphpglgkltlgdvllfvlqHeqhHleq 127
                 + a++eal+ ++  +   +p  g  +ltl+ vl +v+++ ++H ++
  KIR62835.1 106 ADATIEALPLDAIGTVPWWP-AGSNRLTLHGVLVHVTAESHRHAGH 150
                 99999998885555555555.68999*****************986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.46
      DinB_2  70 ealaylaevrarllalle 87 
                  +    ae rar++   e
  KIR62835.1 178 RW----AEHRARVQRAAE 191
                 33....333333333333 PP

>> Tad  Putative Flp pilus-assembly TadE/G-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.7    0.0004       2.4      23      42 ..     175     194 ..     173     194 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0004
         Tad  23 DvgravlartrlQnAADaAA 42 
                 D++r+   r+r+Q+AA++A+
  KIR62835.1 175 DASRWAEHRARVQRAAEQAS 194
                 99****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1472.52
//
Query:       KIR62836.1  [L=284]
Description: hypothetical protein TK50_17985 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2096.33
//
Query:       KIR62837.1  [L=686]
Description: amylo-alpha-1,6-glucosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-43  146.2   0.1    1.1e-42  145.8   0.1    1.2  1  GDE_N_bis  N-terminal domain of (some) glycogen debranching e
    3.5e-09   36.1   0.0    3.1e-06   26.4   0.0    2.3  2  GDE_C      Amylo-alpha-1,6-glucosidase


Domain annotation for each model (and alignments):
>> GDE_N_bis  N-terminal domain of (some) glycogen debranching enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.8   0.1   1.2e-46   1.1e-42       2     192 ..       8     189 ..       7     190 .. 0.90

  Alignments for each domain:
  == domain 1  score: 145.8 bits;  conditional E-value: 1.2e-46
   GDE_N_bis   2 kdgdlflvtdtdGdiaeegegsqGlFcrDtRfLsrlelqingespvllsssaekgnsalsvlltnpeledeeggipaetigirrervvngglfeelelt 100
                  dg++flv+d++Gdi+ +++ ++GlF  DtRfLs++ l+++ge++ +ls ++  ++   ++ l  ++ ++    + + ++++ r+r ++g++ eel++ 
  KIR62837.1   8 LDGNTFLVSDRRGDIEPSQDFPTGLFSFDTRFLSTWVLTVDGERLHPLSIDDAFSY-RTRFFLVPGAPTH----YLDAKVSVIRSRSIGGSFAEELTVL 101
                 589*********************************************99999999.7777777777555....9************************ PP

   GDE_N_bis 101 NynttpvefelslsfdaDFaDlfevrgfrrekrgkllrleaedeelrlayrgldgvvretriqfsaqpdtvkggtatwrlkLaphetwklgl 192
                 N+++++vef +++ ++aDFaDlfe++++rr k+g+  + +  ++elr++yr+ +g+ ret++  s + +tv+ + +t+r+ ++ph++w+++l
  KIR62837.1 102 NHSGREVEFVVRVDMGADFADLFEIKQARR-KKGRA-TATPGENELRFTYRR-EGFHRETVVGSS-ATATVDPAGMTFRVCVDPHGEWTTRL 189
                 ****************************76.45663.345788*******99.*******77665.556689****************9876 PP

>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00023       2.1      24      39 ..     266     282 ..     253     297 .. 0.82
   2 !   26.4   0.0   3.4e-10   3.1e-06      78     380 ..     338     626 ..     323     629 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00023
       GDE_C  24 liAGlpwFsd.WGRDtf 39 
                 ++AGlpwF    GRD++
  KIR62837.1 266 MAAGLPWFMTlFGRDSI 282
                 89*******99****85 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 3.4e-10
       GDE_C  78 gqealyntvdaslwlieaiekYleyagdaeilrriypvlqeilqky.....vqGtky..kigldeedglisagerlnqlTWmDakvkge..pvtPRdGk 167
                  + ++y ++d +  ++  +++Y + +gd++++r+    ++ +l++      + Gt y      ++e+gl ++     ++ W  +++++   p  PR  +
  KIR62837.1 338 PHSPYYGAADSTPLFVILLDEYERWTGDTALVRQLEAPVRGALEWIdtygdLLGTGYvwYRTRNPETGLANQCW---KDSWDAISYSDGrlPGFPR--A 431
                 56899***************************988887776665531113334666622445567788766554...7777555555543588888..5 PP

       GDE_C 168 aveinaLwyaaLkileelaekalge.akkssykelaekikesfekkFwdeaaaavakreilaDvlksseekdlslRpNflialslapellseekakkvl 265
                  +e ++ +y+a    ++la++  ++ a +++ ++ a+++ke f++ Fw       ++re++a  l+++ +    l  N      l   +++++ka  v 
  KIR62837.1 432 TCETQGYAYDAKLRGARLARTVWNDpAYAERLEREAAELKERFNRDFWL------PDREYYALALDPDGRPVDALSSNI--GHLLWSGIVDADKAGPVA 522
                 79*********88888999866555577788888888888888888888......9*************9888899985..567788899988887665 PP

       GDE_C 266 .ekaeeeLltplGlktLdpedpeYkgnYdgsedsrdaaYHqGtvWvwllgsyveallkfgeklgkskealeevkalLeglekhleeaglgslsElfdgd 363
                  +    +L   +G++tL+ ++ +Y+++           YH GtvW++  ++    l + g +  +  + +e + ++ +++   l ea  g   +l+d  
  KIR62837.1 523 aHLLGPRLFSGWGVRTLADDQGRYNPI----------GYHVGTVWPFDNAIVAWGLWRYGFR-EEAGRICEGILSASRHFGGRLPEAFAGYERDLTDYP 610
                 1567889**************999985..........7***********9999988888875.223333333333444444567777777777777766 PP

       GDE_C 364 aellpkgciaQAWSvae 380
                     p++c  QAWS ++
  KIR62837.1 611 V-EYPTACSPQAWSAGT 626
                 6.5699********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       195  (0.0108762); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4775.74
//
Query:       KIR62838.1  [L=130]
Description: hypothetical protein TK50_17995 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0034   17.9   0.0     0.0038   17.7   0.0    1.1  1  SCP2      SCP-2 sterol transfer family


Domain annotation for each model (and alignments):
>> SCP2  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.1e-07    0.0038      19     100 ..      27     109 ..      10     110 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.1e-07
                 CH-EEEEEEECTC.T..EEEEEETTSTEEESSCTTBS-SEEEEEEHHHHHHHHCTSS-HHHHHHTTSSEEEC-HHHHHHHHHHH CS
        SCP2  19 klagvlrfdltdlkg..sltldlkegqldvaakdegkadvtlslsledllelaegklnpqkafmqgkLkieGDielaqkleall 100
                 ++ g+l++ +t ++   ++ +++  g+ +v  +  g ad+   +s++ + +l++g++++ + ++  + ++ GD+ l +++ + +
  KIR62838.1  27 PVRGTLQLRITTGNHseHWRVEMAPGSARVTRET-GPADAYWFGSADLFDQLVTGRAHGISSMLRNESTFTGDVVLFLAFRRFF 109
                 6789*******999899*************6554.69*************************************9999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 933.33
//
Query:       KIR62839.1  [L=124]
Description: sulfur reduction protein DsrE [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-09   37.6   0.0    2.9e-09   37.3   0.0    1.0  1  DrsE      DsrE/DsrF-like family
  ------ inclusion threshold ------
      0.011   15.6   0.1          4    7.3   0.0    2.1  2  DrsE_2    DsrE/DsrF/DrsH-like family


Domain annotation for each model (and alignments):
>> DrsE  DsrE/DsrF-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   3.2e-13   2.9e-09       8     106 ..      14     112 ..       8     123 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 3.2e-13
                 -S-TTTBSHHHHHHHHHHHHHTTT-EEEEEE-GGGGGGGBS..---TGGGTS---GGGGGGCGGGT-EEEEEHHHHHHTT--GGGE-T--EEEE-HHHH CS
        DrsE   8 tggpygseaarealelalaaaalghevsvffygdGvllllk..gqtanpadeknlaellkalkeygvklyvCgqaakargldededlgvgvevsglgel 104
                 t g    e++ +a+ +a  aaa+g +vs+ ++g+ + ++l   +q+ +   + +l ell+     g ++ +C q+a++r + + + l  gv ++g++ +
  KIR62839.1  14 TAGADAPERCAQAFTVAATAAAAGVDVSLWLTGESTWFALPgrAQQFELPHSAPLGELLHVILTTG-RVTACTQCAARRDIGPGDVL-PGVRIAGAAVF 110
                 66777899***********************************99999999*************97.***************99888.8*******998 PP

                 HH CS
        DrsE 105 ae 106
                 +e
  KIR62839.1 111 VE 112
                 76 PP

>> DrsE_2  DsrE/DsrF/DrsH-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2   0.00082       7.3      16      39 ..      22      45 ..       7      46 .. 0.81
   2 ?    7.3   0.0   0.00045         4     111     147 ..      80     116 ..      64     121 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00082
                HHHHHHHHHHHHHHTT-EEEEEE- CS
      DrsE_2 16 kalaalilAsgAaalglevtiFft 39
                +   a+ +A +Aaa g++v+++ t
  KIR62839.1 22 RCAQAFTVAATAAAAGVDVSLWLT 45
                56679**************99876 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00045
                 EEEEEHHHHHHHT--GGGB-TT-EEE-HHHHHHHHHC CS
      DrsE_2 111 klvaCqmtmdlmglkkeelidgveiagaatylkeaee 147
                 +++aC+      ++   ++++gv+iagaa +++ea++
  KIR62839.1  80 RVTACTQCAARRDIGPGDVLPGVRIAGAAVFVEEAMA 116
                 56788888888889999****************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 862.77
//
Query:       KIR62840.1  [L=197]
Description: fatty acid-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-47  159.3   0.0    7.3e-47  159.0   0.0    1.1  1  DUF1794   Domain of unknown function (DUF1794)


Domain annotation for each model (and alignments):
>> DUF1794  Domain of unknown function (DUF1794)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.0   0.0   4.1e-51   7.3e-47       2     149 .]      38     194 ..      37     194 .. 0.94

  Alignments for each domain:
  == domain 1  score: 159.0 bits;  conditional E-value: 4.1e-51
                 CGGGGGGBEEEEEEEEEEETTCEEEEEEEEEEEEESSSSEEEEEEEEEETT......TEEEEEEEEEE......CTSCTEEEEEEEETTTEEEEEEEEE CS
     DUF1794   2 llpLawLvGtWrGeGeggyptieefafgqeiefshdggpylaYesrtwrld......eplhrEsGywr.....ledgtdevelllahpsGvvelyeGev 89 
                 l  L++ vG+WrG+G+ggyptie+f f qei++shdg+p+l+Yesr+w ld      +p  rE G+wr        +tde+e+l++ p+Gv+el  G+ 
  KIR62840.1  38 LDGLLPYVGVWRGRGRGGYPTIEDFDFAQEIRISHDGRPFLHYESRAWILDeqsrpvRPGGREIGWWRpvldgDGRATDELEALMSVPTGVMELHIGKR 136
                 567999*********************************************766554488************97789*********************7 PP

                 ETCCCEEEEECEEEEE.CTSSSEEEEEEEEEEECTCEEEEEEEEETTCECEEEEEEEEEE CS
     DUF1794  90 kngrksleLasdaiartstakevtaakrlyglvdgdLeyveemaafgqelqshlsarLkR 149
                 k  ++++e+ +da++rt+takevta++rl+g+v+g L y+++maa+g++l++hlsarL R
  KIR62840.1 137 K--GTQVEFVTDAVVRTATAKEVTAGHRLFGIVEGALLYAQDMAAMGHSLTPHLSARLIR 194
                 7..558***************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1377.46
//
Query:       KIR62841.1  [L=155]
Description: Fur family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-23   80.9   0.0    9.3e-23   80.7   0.0    1.1  1  FUR              Ferric uptake regulator family
     0.0045   16.8   0.0     0.0089   15.9   0.0    1.4  1  TrmB             Sugar-specific transcriptional regulator Trm
  ------ inclusion threshold ------
      0.028   14.8   0.0      0.037   14.4   0.0    1.1  1  Penicillinase_R  Penicillinase repressor
      0.052   13.5   0.0      0.085   12.8   0.0    1.4  1  PadR             Transcriptional regulator PadR-like family
      0.052   13.1   0.5        1.6    8.4   0.0    2.2  2  TF_Zn_Ribbon     TFIIB zinc-binding
      0.068   13.3   1.6        1.3    9.3   0.3    2.3  2  Ribosomal_L37e   Ribosomal protein L37e
        0.1   13.0   0.1        6.9    7.1   0.0    2.2  2  mono-CXXC        single CXXC unit
        0.6    9.9   2.7         12    5.8   0.2    2.2  2  Rubredoxin_2     Rubredoxin metal binding domain


Domain annotation for each model (and alignments):
>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.0   4.1e-26   9.3e-23       2     112 ..      13     122 ..      12     130 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 4.1e-26
                 TTHCHHHHHHHHHHHHHHHSSSBEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESSSSSEEEEEETTT--EEEE--HHHHHH CS
         FUR   2 aglklTkqRekilevlekseehlsaeevykelkeedpeislaTVYrtLklleeaglvkelefedgesryelakkehhdhlicekCgkviefkddeieki 100
                 +gl+lT qR+ il+   +   h + e+v+ +++e    + ++T+YrtL+lle++glv+++++++g+  y  a +++h hl+c++Cg + e++   +  +
  KIR62841.1  13 RGLRLTAQRQLILQAVLDLG-HATPEQVHTAVREVAAGVNITTIYRTLELLERLGLVTHTHLSHGSPTYHAAGEHQHVHLVCRECGAIDEIDPGLLGPL 110
                 79************988764.**********************************************************************99999999 PP

                 HHHHHHHTT-EE CS
         FUR 101 qeeiaekegfkl 112
                 +++ ++++gf++
  KIR62841.1 111 ADRLVAERGFRV 122
                 999999999886 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     4e-06    0.0089      16      56 ..      27      72 ..      22      83 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4e-06
                HHHHHCCCHHCHHCC.....CTTSSCHCHHHHHHHHHHCTSEEEES CS
        TrmB 16 aLlklgpatadeiae.....elgvprskvYevLrsLedkGlVerek 56
                a+l lg at ++++      ++gv  +++Y++L+ Le+ GlV+  +
  KIR62841.1 27 AVLDLGHATPEQVHTavrevAAGVNITTIYRTLELLERLGLVTHTH 72
                56666666666666511112469999****************9876 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.7e-05     0.037       2      64 ..      18      82 ..      17      90 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
                     --S-SHHHHHHHHHS-EEHHHHHHT--GG.G---HHHHHHHHHHHHHTTS-EEEEE.TTEEEEE- CS
  Penicillinase_R  2 gelEaevmeilwekgeatvkevveeleee.kelaysTVktllrrLvkKgllsreke.grafiYsp 64
                     +++ + +++++ ++g+at ++v++++ e    ++ +T+  +l+ L++ gl+++ +    +  Y++
       KIR62841.1 18 TAQRQLILQAVLDLGHATPEQVHTAVREVaAGVNITTIYRTLELLERLGLVTHTHLsHGSPTYHA 82
                     6677889******************99997899******************99875444455555 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.8e-05     0.085      29      54 ..      50      75 ..      28      81 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.8e-05
                TTHHHHHHHHHHHHHTTSEEEEEE-S CS
        PadR 29 lseGslYpaLkrLekeglvesewees 54
                ++ +++Y++L+ Le+ glv+++   +
  KIR62841.1 50 VNITTIYRTLELLERLGLVTHTHLSH 75
                7789****************998764 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00069       1.6      19      33 ..      90     104 ..      76     111 .. 0.83
   2 ?    2.8   0.3     0.039        86      21      27 ..     132     138 ..     129     145 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00069
                   CEEESSSSBEEEECC CS
  TF_Zn_Ribbon  19 elvCtdCGlVledns 33 
                    lvC +CG++ e ++
    KIR62841.1  90 HLVCRECGAIDEIDP 104
                   68*******999765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.039
                   EESSSSB CS
  TF_Zn_Ribbon  21 vCtdCGl 27 
                   vC++CG+
    KIR62841.1 132 VCGRCGE 138
                   9****95 PP

>> Ribosomal_L37e  Ribosomal protein L37e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3   0.00057       1.3       8      24 ..      84      98 ..      77      99 .. 0.80
   2 ?    2.9   0.0     0.053   1.2e+02      15      24 ..     129     138 ..     124     140 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00057
  Ribosomal_L37e  8 GkrqkkktHilCrrCgk 24
                    G +  +++H +Cr Cg 
      KIR62841.1 84 GEH--QHVHLVCRECGA 98
                    666..567*******95 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.053
  Ribosomal_L37e  15 tHilCrrCgk 24 
                      + +C rCg+
      KIR62841.1 129 LFGVCGRCGE 138
                     6789****97 PP

>> mono-CXXC  single CXXC unit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.034        76       4      16 ..      92     104 ..      90     106 .. 0.86
   2 ?    7.1   0.0    0.0031       6.9       6      32 ..     131     153 ..     127     155 .] 0.84

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.034
   mono-CXXC   4 aCrvCAacreddk 16 
                 +Cr+C a +e d+
  KIR62841.1  92 VCRECGAIDEIDP 104
                 7*****9998776 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0031
   mono-CXXC   6 rvCAacreddkpaasapdRsrlavDdv 32 
                 +vC +c  +d++   +p Rs    D++
  KIR62841.1 131 GVCGRC-GEDPADEGVPGRS---EDGE 153
                 699999.999999*******...6665 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2     0.017        37       2       8 ..      92      98 ..      92     100 .. 0.83
   2 ?    5.8   0.2    0.0052        12      12      22 ..     128     138 ..     125     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.017
  Rubredoxin_2  2 vCsqCGf 8 
                  vC++CG+
    KIR62841.1 92 VCRECGA 98
                  7999996 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0052
  Rubredoxin_2  12 kwfGrCpsCgs 22 
                   ++fG C  Cg+
    KIR62841.1 128 ALFGVCGRCGE 138
                   689******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1222.04
//
Query:       KIR62842.1  [L=374]
Description: glycine cleavage system protein T [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-32  111.2   0.0    7.8e-32  110.7   0.0    1.2  1  GCV_T     Aminomethyltransferase folate-binding domain
      8e-05   22.5   0.6    0.00025   20.9   0.1    2.1  2  GCV_T_C   Glycine cleavage T-protein C-terminal barrel domain
  ------ inclusion threshold ------
       0.29   10.6   0.0       0.43   10.1   0.0    1.1  1  BCAS3     Breast carcinoma amplified sequence 3


Domain annotation for each model (and alignments):
>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.0   1.3e-35   7.8e-32      19     254 ..      32     270 ..      22     272 .. 0.91

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 1.3e-35
       GCV_T  19 emPvqYasesikaehlavreaaglfDvShmgkievsGpdaaalLqrlltndisklkpgkatytlllnedGgvidDlivarldedefllvvnaankekdl 117
                 +++ +Y  +++ +e++   +a+gl+D Sh g + v G+++  +L++l+t+++++l+pg++t  l+l ++G+v+++ +va+ + d+ +l ++++++  +l
  KIR62842.1  32 SVAAHY--GDPLREQRVLDTAVGLVDRSHRGVVAVPGEERIGWLHTLTTQHLAALAPGEGTELLVLSPHGHVEQHAMVAEDG-DTTWLDTEPGATGGLL 127
                 567899..9*************************************************************************.7*************** PP

       GCV_T 118 awlekaaekkdldvevedvteelallalqGPkarevlskll.....gadlselkffsfaevela.......ggkkvlvsRtgyt..GedGfeiyipaee 202
                 a+lek++    ++ve +d+t+e all+l+GP+a+  l+ l        d   ++  +f+  el+          +  +   g+   G +G+++++p+ +
  KIR62842.1 128 AYLEKMRF--FSKVEPRDATAEHALLSLVGPEATGALATLGvtglaAPDAVAVPGPKFRAGELPprptvrySVAP--LPGGGWArrGPLGVDLLVPRPA 222
                 *****999..******************************98888766788889999999999966554222222..2234444669************ PP

       GCV_T 203 aeelweaLleagkeegvkpaGlgArdtlRlEaglrlyghdldeettPleagl 254
                  ++++ +L    +++gv p+Gl A+++ R  a  + +g d+d++t P e++l
  KIR62842.1 223 MDRVVAEL----RAAGVPPVGLWAYEAIRVAARRARVGVDTDHRTIPAEVDL 270
                 ********....88999********************************987 PP

>> GCV_T_C  Glycine cleavage T-protein C-terminal barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.59   3.5e+03      57      73 ..     252     268 ..     242     273 .. 0.76
   2 !   20.9   0.1   4.2e-08   0.00025       1      53 [.     299     352 ..     299     368 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.59
     GCV_T_C  57 gtevevevrgkrvpaev 73 
                   +v v+++ +++paev
  KIR62842.1 252 RARVGVDTDHRTIPAEV 268
                 56788888889999988 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 4.2e-08
     GCV_T_C   1 Rrlvgleld..dgapllrggepilrdgevvGhvTSgaysptlgksialAyvkael 53 
                 Rrlv l+ld    ++l+  g+p+  dg+ vG+v ++   + lg+ +alA++k++ 
  KIR62842.1 299 RRLVLLHLDgvTTDRLPAAGTPVTLDGRAVGFVGTAVLHHELGQ-VALAVLKRNV 352
                 9*******876557888**************************9.9****99544 PP

>> BCAS3  Breast carcinoma amplified sequence 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   7.1e-05      0.43      65      88 ..      90     113 ..      70     125 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.1e-05
       BCAS3  65 ehLlVfspsGhliqYaLdpssgee 88 
                 ++LlV+sp+Gh+ q+a+ ++ g+ 
  KIR62842.1  90 TELLVLSPHGHVEQHAMVAEDGDT 113
                 68**************99887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2571.42
//
Query:       KIR62843.1  [L=278]
Description: 3-keto-5-aminohexanoate cleavage protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-84  282.0   0.2    5.3e-84  281.8   0.2    1.0  1  BKACE     beta-keto acid cleavage enzyme


Domain annotation for each model (and alignments):
>> BKACE  beta-keto acid cleavage enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.8   0.2     3e-88   5.3e-84       3     273 ..       6     274 ..       5     275 .. 0.97

  Alignments for each domain:
  == domain 1  score: 281.8 bits;  conditional E-value: 3e-88
                 -EEEE-S-SSS-CCC-TTS--SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHHTTSEEEE-SSTTTTG-HHHHHTHHHHH- CS
       BKACE   3 iitvavtGavttkednpavPvtpeeiaeeaveaaeaGAaivHlHaRdpedgrpsldpelyrevlarirekepdviinlttggastmsaeerlavlealk 101
                  itva+tGa   k++ pa+Pvt +e+  +a e+   GAa++H+H+Rd ++ rp+ld  + re++a++re  +d+i++l+tgga+t   ++rlavl+a  
  KIR62843.1   6 LITVAPTGAESAKAEVPALPVTLDELLLTAKECEALGAAVIHVHIRD-DEARPTLDQGRLRETVAALRE-GTDLIVQLSTGGAVTDPEADRLAVLDA-G 101
                 69*********************************************.88*******************.9************9987799*******.9 PP

                 -SEEEEE-S-EEEB-SGCEE---HHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHT.TSS-.SSEEEEEEE--CTS--S-HHHHHHHHHHHHHHT CS
       BKACE 102 pemasldlgslnfglkdlvfentpedieellrrmaeagvkpeievfdvghlrnvkrliee.Gllk.gpllvqfvlgvpggapatpenllflkemadrlp 198
                 p+mas+++g+lnf  +d vf n +e+i +l +rm+e+g++pe+e+fd+ghl  ++rl+ + Gl + g+++v+fv+gvpgg+p t ++l++ +++ + lp
  KIR62843.1 102 PDMASCTMGTLNF--GDDVFLNRWEFIVDLHTRMQERGIVPEYEIFDLGHLTALQRLLGKhGLPHgGHVHVDFVMGVPGGMPGTTATLAAAHQALRDLP 198
                 *************..8****************************************99774777799**********************999******* PP

                 TC.EEEEEE-GGGHHHHHHHHHHTT-EEEESTTT-SEEETTEE-S-HHHHHHHHHHHHHHTT-EB--HHHHHHHCT CS
       BKACE 199 eg.awsvagigraqlplaaaalalGghvRvGlEDnlylkkgelaksNaelVeravriarelgreiatpaeaReilg 273
                 eg ++s++gigr+ +p++ a+l++Ggh+RvG+ED++ ++kg++ +sN +lV+rav  a+ ++r++ t+ eaRe+lg
  KIR62843.1 199 EGtTFSATGIGRSTIPVLLASLSAGGHLRVGMEDTVTYAKGRPVESNMQLVARAVGFAQLAQRPPLTTTEARELLG 274
                 **66**********************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2013.48
//
Query:       KIR62844.1  [L=319]
Description: asparaginase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-114  382.5   1.7   1.5e-114  382.4   1.7    1.0  1  Asparaginase_II  L-asparaginase II


Domain annotation for each model (and alignments):
>> Asparaginase_II  L-asparaginase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.4   1.7  8.5e-119  1.5e-114       1     322 []      12     317 ..      12     317 .. 0.99

  Alignments for each domain:
  == domain 1  score: 382.4 bits;  conditional E-value: 8.5e-119
  Asparaginase_II   1 vevtRgglvEsrhrgsvvvvdadgkvllsvGdpervtfpRSaaKplqAlalleagaaekfglddeelAlacaSHsGeeehvaavrsiLakagld 94 
                      +ev+R+g+vE+ hrgsvvv+da+g++++++Gd+  ++fpRSa Kp+qA+++l+ag+      d++++A+++aSH Gee+hva+v ++La agld
       KIR62844.1  12 AEVVRSGFVEGLHRGSVVVLDAAGATVAAAGDVGSPVFPRSASKPMQAVGMLRAGLP---LTDPADVAIVSASHAGEEFHVARVGALLAGAGLD 102
                      589******************************************************...788999**************************** PP

  Asparaginase_II  95 edaLrcgahlpldeeareallraggkperllnnCSGKHagmlatcvaagwplegYldpehplqqrirevveeltgepeeeasvgvDGCgaPlfa 188
                      e++L c+++lp++e area+lragg+p+r  +nCSGKH+gml+tc aagwp +gY +pehplq ++r++vee+tgep   a+vgvDGCgaP++a
       KIR62844.1 103 ESDLGCPPDLPMGELAREAVLRAGGGPTRGRMNCSGKHTGMLLTCLAAGWPRAGYRQPEHPLQLALRSAVEECTGEP--VAAVGVDGCGAPVLA 194
                      *****************************************************************************..9************** PP

  Asparaginase_II 189 lpLkglArafarlaaaaegleraealervaaamrahPelvaGegrfdtelmralpgkliaKvGaeGvyavalpdgglgvavKieDGseraleav 282
                      ++L+glAra+ rl++a +g++    +++va+amrahPelv+G+   d++lmr lpg ++aK GaeGv+a+alp  g +va+Ki+DG++ra+++v
       KIR62844.1 195 VSLTGLARAYLRLVSAVPGSP----ERTVADAMRAHPELVGGTWAEDSRLMRGLPG-AVAKIGAEGVIAAALPGVG-AVALKIDDGATRARMPV 282
                      ******************999....*******************************.*******************.***************** PP

  Asparaginase_II 283 vvalLeqlgvldpeeaeelaalaapavlngrgeevGelra 322
                      +v++L++lgv +p     l+++a+ ++l+g g +vG +r+
       KIR62844.1 283 LVSALRRLGVRAP----VLDEYAELPLLGG-GIPVGAVRP 317
                      *************....9************.******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2484.31
//
Query:       KIR62845.1  [L=265]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-20   73.1   0.0    3.6e-19   69.4   0.1    1.9  2  Abhydrolase_1  alpha/beta hydrolase fold
    2.3e-18   67.6  17.5    2.8e-18   67.3  17.5    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    2.2e-07   30.4   0.1    5.3e-06   25.9   0.1    2.3  2  Hydrolase_4    Serine aminopeptidase, S33
    0.00017   21.3   0.0    0.00038   20.2   0.0    1.5  2  Esterase       Putative esterase
  ------ inclusion threshold ------
      0.048   13.7   0.1      0.074   13.1   0.1    1.4  1  FIST           FIST N domain
       0.11   12.2   0.0       0.17   11.7   0.0    1.2  1  Abhydrolase_2  Phospholipase/Carboxylesterase
        0.2   10.3   0.0       0.39    9.4   0.0    1.4  1  Ndr            Ndr family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.1   1.4e-22   3.6e-19       2     129 ..      21     143 ..      20     153 .. 0.83
   2 ?    1.7   0.0     0.067   1.7e+02     201     257 .]     202     253 ..     180     253 .. 0.85

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 1.4e-22
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyper 97 
                    ++++lh++ +   +w+e   +paLa  +++vi++DlrG+g S+ + ++      + ++ dd+  +ldal + + +lvG+S+GG++a   a+ yp+r
     KIR62845.1  21 PVLLLHAGIADRRMWRE--QVPALAA-RHRVIAVDLRGYGDSELPTDP------F-AHHDDVVGLLDALELPRAALVGCSFGGAVAIDTALAYPDR 106
                    89***************..******9.****************99995......4.499************************************* PP

                    EEEEEEESE....CSSCCHHHH.HHHHHHHHHHCHHC CS
  Abhydrolase_1  98 Vkalvllga....idpaaslie.aqrqqaksfpdffd 129
                    V al+l g+    ++++ + ++ +++   +++p+ f 
     KIR62845.1 107 VGALALFGTavsgSEWSDEANDlWDDLVGETDPEDFA 143
                    *********7666555554444033333444555554 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.067
                    HHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS.EEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 201 llrlrelknvlaptlvisgtsDplvppkaledlaqllpk.krlvvisdagHlaflegp 257
                    l++lr       p+lv +g+ D  +  +  +++a+  p+ +rl  ++dagHl+ le+p
     KIR62845.1 202 LGELRV------PVLVAAGAADVPDIGRLADRIAAEVPGaVRLPDVPDAGHLLPLERP 253
                    556666......99999999998887799999999999999999*******9988875 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3  17.5   1.1e-21   2.8e-18       1     218 [.      22     257 ..      22     259 .. 0.61

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 1.1e-21
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHHHHHHCCTT..TTSEEEEEETCHHHHHHH.HHHCC..EE..EEE CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldledladlaalldelaagggpvvlvGHSlGGalala.aaplalvvg..vll 93 
                    vlllH++ +++++W+  ++ al aa+++v+a+Dl+G+G+s+ p + ++  +d++ lld+l    +++ lvG S+GGa+a   a++++++vg   l 
     KIR62845.1  22 VLLLHAGIADRRMWR-EQVPAL-AARHRVIAVDLRGYGDSELPTDPFAHHDDVVGLLDALE--LPRAALVGCSFGGAVAIDtALAYPDRVGalALF 113
                    89************5.255444.555588*********888888888776777*******7..8899**************666666777776444 PP

                    S-..----TTTS----TTHHHHHH...TT-C........CCCHCCH......S-HS...CCCCHHHCCCCHCHCCCGHHHHCC....HHCHTTCCH CS
  Abhydrolase_6  94 dppptalpagllaaalelllalla...llrl........lawlsre......plpr...lfladedadaawrarlarlaalla....glgllpaaa 165
                     +   + +  + + a  l++ l +   ++ +          w+++         ++   +f +++d     r++la+ +al a     l++ + ++
     KIR62845.1 114 GT--AVSGSEWSDEANDLWDDLVGetdPEDFaataagevRFWVVGPgrrpedV-DPeliRFAEKMD-----RRALAAELALSAvevaELDPPAIER 201
                    44..2333333333333333222211122221122222234442222233321.121225555333.....222222222222222355566688* PP

                    HTT-TTGCEEE.CTT-C.HHHHCHHCCCH..STTEEETCE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 166 wadlpvpllvl.ggeDp.lvprllerlla..qagarlpvvlpgaGHlphleepdeva 218
                    +  l+vp+lv  g++D   + rl++r++a     +rl   +p+aGHl+ le+pd+v+
     KIR62845.1 202 LGELRVPVLVAaGAADVpDIGRLADRIAAevPGAVRL-PDVPDAGHLLPLERPDAVN 257
                    ********87533444468889999999986666666.7899****77777****97 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   2.1e-09   5.3e-06      28     114 ..      43     120 ..      17     147 .. 0.80
   2 ?    2.5   0.0     0.029        73     183     203 ..     198     218 ..     162     252 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 2.1e-09
  Hydrolase_4  28 aaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkik 114
                  aa+   v+a+D rG+G se      ++   + dD+  ++++++      +  l+G S GG++a+  +l ypd+v +l l+++a++  
   KIR62845.1  43 AAR-HRVIAVDLRGYGDSE---LPTDP-FAHHDDVVGLLDALEL----PRAALVGCSFGGAVAIDTALAYPDRVGALALFGTAVSGS 120
                  544.479***********4...32344.4567999999998883....34689******************************9876 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.029
  Hydrolase_4 183 leeraakitlPllllhGeaDk 203
                  + er  ++++P+l+  G+aD 
   KIR62845.1 198 AIERLGELRVPVLVAAGAADV 218
                  567889999**********95 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.2   3.2e+03      19      42 ..      15      41 ..       6      52 .. 0.63
   2 !   20.2   0.0   1.5e-07   0.00038     117     159 ..      84     132 ..      68     163 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
                GGTTTEEEEEEE--T...THHCCHHHH CS
    Esterase 19 spgrkypvvylldGl...tgwdqnfra 42
                ++g + pv++l+ G+     w ++++a
  KIR62845.1 15 DTGDGTPVLLLHAGIadrRMWREQVPA 41
                566777777777776555455544444 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.5e-07
                 EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CC......HCHHHC CS
    Esterase 117 ravaGqSmGGlgALilalkhpdrFgsvssfSpivnps......namWgq 159
                  a++G S+GG +A+ +al +pdr g  + f   v+ s      n +W+ 
  KIR62845.1  84 AALVGCSFGGAVAIDTALAYPDRVGALALFGTAVSGSewsdeaNDLWDD 132
                 79****************************9888777777777777766 PP

>> FIST  FIST N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.9e-05     0.074      10      59 ..      68     131 ..      63     234 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.9e-05
        FIST  10 easdleallealrealpgapliGcstageiase.gleledgvvalal..asa..............d 59 
                 +++d+  ll+al  +lp+a l+Gcs++g +a +  l + d v alal  + a              d
  KIR62845.1  68 HHDDVVGLLDAL--ELPRAALVGCSFGGAVAIDtALAYPDRVGALALfgT-AvsgsewsdeandlwD 131
                 466677777766..67**************76669999*******99440.1334444444444440 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.6e-05      0.17     106     152 ..      83     128 ..      75     134 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.6e-05
                    GEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTTTS-G CS
  Abhydrolase_2 106 riiigGFSqGaalalylaltlpkklggivafsgalplsqklessata 152
                    r +++G S G+a+a+ +al++p ++ g++a+ g++++ ++++++a+ 
     KIR62845.1  83 RAALVGCSFGGAVAIDTALAYPDRV-GALALFGTAVSGSEWSDEAND 128
                    56899******************97.688999999999999988876 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00015      0.39      87     144 ..      70     127 ..      62     137 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00015
                 TTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHH CS
         Ndr  87 dqllavldhfklksviglGvgaGAyilarfalkhperveglvLinitskaagwvewak 144
                 d+++ +ld ++l  +  +G   G  +    al++p+rv +l L  +  + + w + a 
  KIR62845.1  70 DDVVGLLDALELPRAALVGCSFGGAVAIDTALAYPDRVGALALFGTAVSGSEWSDEAN 127
                 788999****************************************999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1933.90
//
Query:       KIR62846.1  [L=227]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-15   57.1   0.5    2.7e-15   56.1   0.5    1.5  1  HTH_3          Helix-turn-helix
    3.6e-14   52.8   0.5    3.6e-14   52.8   0.5    2.7  3  HTH_31         Helix-turn-helix domain
      6e-10   39.0   0.0    9.3e-10   38.4   0.0    1.3  1  HTH_19         Helix-turn-helix domain
      0.005   16.4   0.1      0.038   13.5   0.1    2.3  2  HTH_24         Winged helix-turn-helix DNA-binding
     0.0055   16.5   0.3      0.016   15.1   0.3    1.8  1  HTH_25         Helix-turn-helix domain
      0.008   16.6   0.0      0.013   15.9   0.0    1.3  1  HTH_26         Cro/C1-type HTH DNA-binding domain
  ------ inclusion threshold ------
      0.023   15.4   2.8      0.023   15.4   2.8    2.1  2  LTXXQ          LTXXQ motif family protein
      0.037   13.9   0.1      0.037   13.9   0.1    2.7  3  HTH_AsnC-type  AsnC-type helix-turn-helix domain
      0.061   13.3   2.6       0.15   12.0   0.0    2.2  2  HTH_37         Helix-turn-helix domain
      0.097   13.0   0.0       0.24   11.7   0.0    1.8  1  Rrf2           Transcriptional regulator
        0.1   12.5   0.4        2.8    8.0   0.0    2.7  3  MarR           MarR family


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.5   1.7e-18   2.7e-15       1      52 [.      14      65 ..      14      67 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 1.7e-18
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsl 52
                ++ lR  +++s+++LAe +Gvs  ++s+iE+G r+Ps e+l+ la aL vs+
  KIR62846.1 14 IRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVST 65
                899***********************************************96 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.5   2.2e-17   3.6e-14       2      57 ..      10      64 ..       9      72 .. 0.93
   2 ?   -1.7   1.5       2.4   3.9e+03      18      28 ..     126     136 ..     109     141 .. 0.58
   3 ?   -2.1   0.0       3.1     5e+03      41      51 ..     177     187 ..     174     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 2.2e-17
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                 G + r+lR+ a +s++++Ae++gvs  +ls++E+G r  ps +vl +la al+++
  KIR62846.1 10 VGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLR-KPSAEVLQQLASALRVS 64
                699***********************************.6**************95 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.4
      HTH_31  18 eevAerlgvse 28 
                 e++Ae+++ +e
  KIR62846.1 126 EAAAEAAQTTE 136
                 44444444444 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.1
      HTH_31  41 rpspavleala 51 
                  p++avle++a
  KIR62846.1 177 TPTEAVLESVA 187
                 599****9988 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   5.7e-13   9.3e-10       1      53 [.      11      62 ..      11      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 5.7e-13
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealg 53
                G +++ +R+++++++++lae++g+s  ++s+iE g + +psae+l+++a al 
  KIR62846.1 11 GGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLR-KPSAEVLQQLASALR 62
                679********************************99.9**********9875 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   2.3e-05     0.038      12      34 ..      17      39 ..      14      42 .. 0.89
   2 ?   -0.3   0.0      0.49     8e+02       8      22 ..      83      97 ..      81      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.3e-05
      HTH_24 12 LqknprisqreLAerlglSpstv 34
                L++n++is r+LAe+ g+S + +
  KIR62846.1 17 LRRNAKISLRQLAEQAGVSNPYL 39
                89*****************9866 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.49
      HTH_24  8 ILelLqknprisqre 22
                +L ++  +p++++++
  KIR62846.1 83 VLAAIAVDPDLTMAQ 97
                7999********975 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.3   9.5e-06     0.016       3      33 ..      15      45 ..      13      67 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.5e-06
                HHHHHTTT--HHHHHHHSS--HHHHHHHHCT CS
      HTH_25  3 raaRearglsleevaketkIrkdylealEed 33
                r  R+ +++sl+++a++  ++  yl ++E++
  KIR62846.1 15 RDLRRNAKISLRQLAEQAGVSNPYLSQIERG 45
                889**************************98 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.1e-06     0.013       2      53 ..      14      64 ..      13      67 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.1e-06
      HTH_26  2 LrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgct 53
                +r l +  +i+  +La+++g+s + ls +  g  + +s+++L+ ++ aL ++
  KIR62846.1 14 IRDLRRNAKISLRQLAEQAGVSNPYLSQIERG-LRKPSAEVLQQLASALRVS 64
                67888899************************.69**************986 PP

>> LTXXQ  LTXXQ motif family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   2.8   1.4e-05     0.023       5      61 ..      83     139 ..      79     145 .. 0.70
   2 ?   -1.0   0.3       1.8   2.9e+03      44      58 ..     204     214 ..     184     226 .. 0.44

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
                 XXXSTTTT----HHHHHHHHHHHHHHHHHS---..-HHHHHHHHHHHTSSS--HHHH CS
       LTXXQ   5 riaklkaeLkLtdaQkaalkalaeaaraeakplkakkeemramrkkvlaanfdetap 61 
                  +a ++ + +Lt aQk+ l+++ e+ r+e+++l +++++ +a+ ++  aa++ e+++
  KIR62846.1  83 VLAAIAVDPDLTMAQKQSLTQIYETFRRENSRLAEAEAATEAAEAAAEAAQTTEATA 139
                 5666666779***********************555555555544333444444443 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.8
                 HHHHHHHHTSSS--H CS
       LTXXQ  44 mramrkkvlaanfde 58 
                 ++a+ +    a++ +
  KIR62846.1 204 RKAAEQ----ATAVK 214
                 222222....11111 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.3e-05     0.037      12      31 ..      17      36 ..      14      38 .. 0.91
   2 ?   -0.0   0.0      0.49   7.9e+02      21      37 ..      55      71 ..      54      73 .. 0.84
   3 ?   -2.8   0.4       3.6   5.9e+03      20      26 ..     112     118 ..     109     140 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-05
  HTH_AsnC-type 12 LqedaRisyaeLAervGlSe 31
                   L+++a+is ++LAe+ G+S 
     KIR62846.1 17 LRRNAKISLRQLAEQAGVSN 36
                   99****************96 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.49
  HTH_AsnC-type 21 aeLAervGlSestvlrR 37
                   ++LA ++ +S+++   R
     KIR62846.1 55 QQLASALRVSTPAMYLR 71
                   689*******9987665 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3.6
  HTH_AsnC-type  20 yaeLAer 26 
                    +++LAe+
     KIR62846.1 112 NSRLAEA 118
                    5555553 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.4e-05      0.15      23      64 ..      14      54 ..      10      63 .. 0.82
   2 ?    0.6   0.7      0.34   5.5e+02      15      47 ..      96     128 ..      88     138 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.4e-05
                HHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHH CS
      HTH_37 23 iaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkL 64
                i++l++  ++s +++a+  g++ P +s+++rg l++ s + L
  KIR62846.1 14 IRDLRRNAKISLRQLAEQAGVSNPYLSQIERG-LRKPSAEVL 54
                8999**************************95.555555555 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHHHHHCT--HHHHHHHHT--HHH CS
      HTH_37  15 aKaqlalaiaeliekrelsqseaaqllgiaqPk 47 
                 a  q + +i+e+ ++++ + +ea ++++ a++ 
  KIR62846.1  96 AQKQSLTQIYETFRRENSRLAEAEAATEAAEAA 128
                 555667789999999999999999999888775 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015      0.24      21      51 ..      18      48 ..      13      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
                STCC-B-HHHHHHHHTS-HHHHHHHHHHHHH CS
        Rrf2 21 eeeepvsseeiaerqnispsylekilakLrk 51
                +++ ++s++++ae+ ++s +yl++i + Lrk
  KIR62846.1 18 RRNAKISLRQLAEQAGVSNPYLSQIERGLRK 48
                455679*******************999998 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0017       2.8      10      37 ..      15      42 ..      13      49 .. 0.85
   2 ?    1.6   0.0      0.16   2.6e+02      20      34 ..      54      68 ..      48      69 .. 0.89
   3 ?   -1.6   0.0       1.6   2.6e+03       1      25 [.      93     117 ..      93     123 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0017
                HHHHHSTTEEHHHHHHHHTS-HHHHHHH CS
        MarR 10 rilyeqgplsvseLakklgvskstvtrv 37
                r l+++  +s+ +La++ gvs+++++ +
  KIR62846.1 15 RDLRRNAKISLRQLAEQAGVSNPYLSQI 42
                678889999***************9987 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.16
                HHHHHHHHTS-HHHH CS
        MarR 20 vseLakklgvskstv 34
                +++La++l vs++++
  KIR62846.1 54 LQQLASALRVSTPAM 68
                579********9986 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.6
                 --HHHHHHHHHHHHSTTEEHHHHHH CS
        MarR   1 ltltqfviLrilyeqgplsvseLak 25 
                 lt++q   L+++ye     +s La+
  KIR62846.1  93 LTMAQKQSLTQIYETFRRENSRLAE 117
                 6888888899999876666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1131  (0.0630822); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 1700.07
//
Query:       KIR62847.1  [L=273]
Description: hypothetical protein TK50_18050 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2296.98
//
Query:       KIR62848.1  [L=105]
Description: hypothetical protein TK50_18055 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-24   86.5   3.4    1.4e-24   86.1   3.4    1.0  1  DUF2516   Protein of unknown function (DUF2516)
  ------ inclusion threshold ------
      0.075   12.1   0.5      0.083   12.0   0.5    1.0  1  DUF2048   Abhydrolase domain containing 18
        2.8    8.4   6.3         16    6.0   6.3    1.9  1  DUF805    Protein of unknown function (DUF805)


Domain annotation for each model (and alignments):
>> DUF2516  Protein of unknown function (DUF2516)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   3.4   2.4e-28   1.4e-24       2      92 ..      11     100 ..      10     101 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 2.4e-28
     DUF2516   2 slqalvllllalvvlvlslvAlvdalrrradaFeaagkrtKpfWlailgvallvlllglfgalsllgliavvaalvYlvDVRPavrevgrg 92 
                 ++q+++ +ll +++lv++ vAlv+a+++r + F+a+g++ K  W+ail+v+l+++ll +++ l+++gli+++aal+Yl+DVR  +r++ +g
  KIR62848.1  11 QVQYWITMLLLVFALVIEGVALVHAITQRGEGFAAIGTLPKGGWIAILAVCLVLTLL-TNNVLNIFGLIGIAAALIYLLDVRVGLRDLHDG 100
                 79*******************************************************.8999************************99877 PP

>> DUF2048  Abhydrolase domain containing 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   1.4e-05     0.083     152     197 ..      18      63 ..       9      81 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
     DUF2048 152 lfvmgsalilEslvllhwlereGyGplgltGlSmGGhmaslaasnw 197
                 ++++  al+ E  +l+h++ ++G G  ++  l  GG  a la+++ 
  KIR62848.1  18 MLLLVFALVIEGVALVHAITQRGEGFAAIGTLPKGGWIAILAVCLV 63 
                 5678889************************************986 PP

>> DUF805  Protein of unknown function (DUF805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   6.3    0.0027        16      12      71 ..      13     105 .]       8     105 .] 0.59

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0027
      DUF805  12 efwwfvlfllllviv.lallaavlaa................................aavasalsvvlallllvpslavtvRRlHDtgrsgw 71 
                 ++w+ +l+l+++ ++  ++l++++++                                +  +  l+ + a l++++ + v  R lHD   s w
  KIR62848.1  13 QYWITMLLLVFALVIeGVALVHAITQrgegfaaigtlpkggwiailavclvltlltnnVLNIFGLIGIAAALIYLLDVRVGLRDLHDGRGSSW 105
                 688666655444444122223333336888888888877777666666666655554444444455555566666669999999999665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 856.29
//
Query:       KIR62849.1  [L=295]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-07   31.4   0.0    7.6e-05   22.5   0.0    2.1  1  Abhydrolase_1  alpha/beta hydrolase fold
    5.2e-07   29.2   0.1    1.1e-05   24.9   0.1    2.3  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
       0.05   13.7   0.1       0.21   11.7   0.1    1.9  2  Abhydrolase_4  TAP-like protein


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.3e-08   7.6e-05       6     246 ..      62     273 ..      57     277 .. 0.65

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.3e-08
                    E-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEE CS
  Abhydrolase_1   6 lhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyperVkal 101
                     hGl+++    +   ++++ a  g   + +  rG+g+S+++p +    ++  ++a+dl+++ d  +  +    G S+G    + ++ae per ++l
     KIR62849.1  62 AHGLGNGIATTRP--FGSGVA--GRK-VFFQFRGHGRSEAPPGP----WSYLDLARDLRAVADLGNATRA--FGASLGAGALCRLLAESPERFDRL 146
                    5555555555555..555555..333.45889**********86....7777888888888777776666..************************ PP

                    EEESE.CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCC CS
  Abhydrolase_1 102 vllga.idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksieqwpttd 196
                    v+  +   + + +  a  ++a        g+a + a        +  +a l+   r++     + ++  + + +   + +la+g +   +q+p  d
     KIR62849.1 147 VFFLPaALDRPRTPAARSRIADLIEAVESGDASAVA--------DVVSAELPPAVRNTP----AGWAYLRQRLDHLLRDGLAAGLAALPDQAPLGD 230
                    **9993222222222222222222222222222222........222222222222222....666666777777888888888888888888888 PP

                    HHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEE CS
  Abhydrolase_1 197 saklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvis 246
                    +a+       l +v+ap+lv++ + D l p ++ e+la++lp+++l+v++
     KIR62849.1 231 RAQ-------LAAVTAPALVLACAGDDLHPVEVAEQLAAALPRATLHVYD 273
                    888.......4567778888888888888888888888888887777765 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   1.8e-09   1.1e-05       8     228 ..      60     273 ..      53     275 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.8e-09
  Hydrolase_4   8 vlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvagli 105
                  v++HGl++ +     ++   a +  +v  +  rGhGrse   g + s+ d+ +Dl+a+ +             +G S+G+   +++l++ p+++++l+
   KIR62849.1  60 VFAHGLGNGIATTRPFGSGVAGR--KV-FFQFRGHGRSEAPPGPW-SYLDLARDLRAVADLGN------ATRAFGASLGAGALCRLLAESPERFDRLV 147
                  55666666666666666655543..33.4679*******999966.677899*****976555......34479************************ PP

  Hydrolase_4 106 lsaPalkikaklkappllklllkllgkllpklqv......snnlkadslsrdpevva..ayeadplvhgkitvrlllelldamkrleeraakitlPll 195
                  ++ Pa   +++++  ++   ++ l+  +  +          +  ++  + + p+  a  + + d+l+++++ ++l++   +a    +++ a++t+P l
   KIR62849.1 148 FFLPAALDRPRTP--AARSRIADLIEAVE-SGDAsavadvVSAELPPAVRNTPAGWAylRQRLDHLLRDGLAAGLAALPDQAPLGDRAQLAAVTAPAL 242
                  *****99998863..22222222222221.11111223333455666666666666622444578888888888777666666666778888999*** PP

  Hydrolase_4 196 llhGeaDkvvdpeasrelyerlgskdktlklyp 228
                  +l  + D + + e +++l+++l+  + tl++y+
   KIR62849.1 243 VLACAGDDLHPVEVAEQLAAALP--RATLHVYD 273
                  ********************999..69999997 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.33     2e+03      39      51 ..      50      62 ..      32      96 .. 0.79
   2 ?   11.7   0.1   3.6e-05      0.21      31      72 ..     235     276 ..     217     285 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.33
  Abhydrolase_4 39 llqnerDpaTPye 51
                   l+++ +Dp+T ++
     KIR62849.1 50 LVTGAGDPVTVFA 62
                   7888899999654 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.6e-05
  Abhydrolase_4  31 akgaapvLllqnerDpaTPyegakklakalggavlvtvegeG 72 
                    a+++ap+L+l+  +D   P e a++la al++a+l +++  G
     KIR62849.1 235 AAVTAPALVLACAGDDLHPVEVAEQLAAALPRATLHVYDRPG 276
                    45689***************************9987777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2160.50
//
Query:       KIR62850.1  [L=232]
Description: nucleotidyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.9e-22   77.7   0.0    1.5e-21   77.1   0.0    1.3  1  RlaP          RNA repair pathway DNA polymerase beta family
  ------ inclusion threshold ------
      0.017   15.4   0.0       0.03   14.6   0.0    1.4  1  NTP_transf_2  Nucleotidyltransferase domain
       0.15   12.0   0.7        0.3   11.1   0.1    1.9  2  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 


Domain annotation for each model (and alignments):
>> RlaP  RNA repair pathway DNA polymerase beta family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.0   2.5e-25   1.5e-21      20     169 ..       3     159 ..       1     218 [. 0.79

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 2.5e-25
        RlaP  20 ilyacesGSrawGfpspdsDyDvrfiyiepaewylglertrdvielpiddelDlvgwelrKalrLllksNptvlewlsspivyledtseleell.rlae 117
                 +l+   +GS a+G++ p sD+D  +++  p+ +  gl+++r+ ++   +++ D++ +e  K++rL+l +Npt  e++  p + +e+ s+l+  l    +
  KIR62850.1   3 LLLSGIVGSVAYGLARPGSDVDRIGVFAAPTVAFHGLHPPRESMV---TTDPDVTLHEAGKYARLALGGNPTATELMWLPDDCYETRSALGDRLiGIRS 98 
                 577789*******************************99998888...99********************************99999998765515566 PP

        RlaP 118 kvflsrrvahhYlgmakkqlrry........lkgeevr......lKkylyvlRpllagrwllekge 169
                  +++  rv+  Ylg+a++q+r++        +     +       K++ ++ R++ +gr l ++g 
  KIR62850.1  99 AFLSAPRVRDAYLGYAAQQFRKLasrsggtfS-----AdtrlrtAKHARHLARLVHQGRLLYATGV 159
                 6666789****************886665553.....04444468999999999999998877765 PP

>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0     5e-06      0.03      19      39 ..       8      28 ..       6      50 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5e-06
                  EEHHHHCTTSCTTSSEEEEEE CS
  NTP_transf_2 19 lfGSyarGtalkgSDiDllvv 39
                  ++GS+a G+a++gSD+D + v
    KIR62850.1  8 IVGSVAYGLARPGSDVDRIGV 28
                  69***************6555 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.5     9e+03      11      17 ..      47      53 ..      47      53 .. 0.79
   2 ?   11.1   0.1     5e-05       0.3      15      23 .]     104     112 ..     104     112 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.5
  BCA_ABC_TP_C 11 vrndPrV 17
                  v  dP+V
    KIR62850.1 47 VTTDPDV 53
                  5679*99 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 5e-05
  BCA_ABC_TP_C  15 PrVieAYLG 23 
                   PrV++AYLG
    KIR62850.1 104 PRVRDAYLG 112
                   9*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1439.73
//
Query:       KIR62851.1  [L=306]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-17   62.8   0.0    1.1e-16   60.9   0.0    1.7  1  adh_short     short chain dehydrogenase
    5.1e-15   55.7   0.0    1.5e-14   54.1   0.0    1.6  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
      0.066   13.1   0.7       0.11   12.4   0.7    1.2  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   1.8e-20   1.1e-16       2     186 ..      10     213 ..       9     218 .. 0.87

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 1.8e-20
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCH...........HHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.. CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrse...........ekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.. 87 
                 v+lv Ga++G Gr+ia +l ++Ga+v++++rs+           e++ee+a+ + ++g + +a++vD    e+v++lv+++ ++ g+ldvLvn +    
  KIR62851.1  10 VALVAGATRGAGRQIAIQLGAAGATVYATGRSSrtagrseldrpETIEETAELVTAAGGTGIAVRVDHLVPEQVRDLVARIDAEQGRLDVLVNDVWGad 108
                 89**************************999862222222222244566666666669999********************************985559 PP

                 ...S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG...TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEES CS
   adh_short  88 ...tgsgpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvag...kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPG 180
                    t+ +p+ e   ++  r++ + +   + +++ +lp ++++ +G +v ++  +     v++   + Y  +K  v+ l+ + a+el+p+g + +a+ PG
  KIR62851.1 109 pliTWEKPVWEQPLDAGFRTLRLAVDTHIITSHFALPLLVRRPGGLVVEIGDGTReynDVHYRLSVFYDLAKTCVNRLAFTQAHELEPHGGTAVALSPG 207
                 999*************9999******************************9876522267888899********************************* PP

                 SBSSHH CS
   adh_short 181 lvdTdm 186
                  +++++
  KIR62851.1 208 WIRSEF 213
                 *99876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   2.5e-18   1.5e-14       1     217 [.      15     254 ..      15     263 .. 0.79

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 2.5e-18
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH..H.........HHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG.. CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea..k.........krveelaeelgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapk.. 82 
                   Ga +g Gr+iA +l ++Ga+v +t ++ +   +         ++++el+++ g + + +++D   +eqv++lv+++ ++ g+lD+lvn +  a++  
    KIR62851.1  15 GATRGAGRQIAIQLGAAGATVYATGRSSRTagRseldrpetiEETAELVTAAGGTgIaVRVDHLVPEQVRDLVARIDAEQGRLDVLVNDVWGADPli 111
                   899********************98876543211122221113344555555544546*******************************99999989 PP

                   .CSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTT...HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE-- CS
  adh_short_C2  83 .lkgpfletsreefdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnyn...aygaaKaalealtrylAvelgpkgiRvNavspgp 173
                     ++p+ e + +   r+l   +   + +++ alpl+ ++  g +v +     e    +y     y  aK  ++ l+ + A+el p+g +  a spg+
    KIR62851.1 112 tWEKPVWEQPLDAGFRTLRLAVDTHIITSHFALPLLVRRpgGLVVEIGDGTREYNDVHYRlsvFYDLAKTCVNRLAFTQAHELEPHGGTAVALSPGW 208
                   99********************************555444499999988888877777777889********************************* PP

                   BHCTG.GGGSTTHHH.HHHHHHHHSTTSS-B-HHHHHHHHHHHCSG CS
  adh_short_C2 174 ikTla.asgikgfde.lleelearaplgrlgtpeevaeaalfLasd 217
                   i+ +   +++  +++  ++ +++   +    tp  v++a++ La d
    KIR62851.1 209 IRSEFmLEHFGVTEAnWRDGAAKDPHFLISETPAFVGRAVAALAAD 254
                   **98734444333331444444444444456888899999999877 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.7   1.8e-05      0.11       4      83 ..      12      98 ..      10     105 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.8e-05
                EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..........--HHHHHHHHHH.HHTT-EEEE----TT-HHHHHHHHHHHHHHSS--- CS
          KR  4 litGGlGgLGlelarwlaekgarhlvllsRsa........aadedskaliael.ealgaevevvaaDvsdkdavealleeikaeeppik 83
                l++G++ g G+++a +l + ga ++  ++Rs+          +++  +++ael +a g +  +v++D   +++v+ l+++i+ae++++ 
  KIR62851.1 12 LVAGATRGAGRQIAIQLGAAGA-TVYATGRSSrtagrselD-RPETIEETAELvTAAGGTGIAVRVDHLVPEQVRDLVARIDAEQGRLD 98
                9******************998.589999998666655532.222223444441445667778899999*************9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2263.13
//
Query:       KIR62852.1  [L=330]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-42  144.7   0.2      4e-42  144.2   0.2    1.2  1  WYL            WYL domain
    2.5e-16   59.3   0.1    4.1e-16   58.7   0.1    1.4  1  HTH_11         HTH domain
    7.8e-05   23.0   0.1    0.00019   21.7   0.1    1.6  1  Rrf2           Transcriptional regulator
    0.00038   20.4   0.2    0.00095   19.1   0.2    1.8  1  HTH_29         Winged helix-turn helix
    0.00091   18.9   0.0     0.0017   18.1   0.0    1.5  1  HTH_DeoR       DeoR-like helix-turn-helix domain
      0.001   19.1   1.0      0.003   17.6   0.2    2.1  2  HTH_20         Helix-turn-helix domain
     0.0028   17.5   0.1     0.0072   16.2   0.1    1.7  1  TrmB           Sugar-specific transcriptional regulator TrmB
     0.0094   16.1   0.1      0.036   14.2   0.1    1.9  1  HTH_28         Helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.5   0.8       0.67    9.8   1.0    2.9  2  HTH_IclR       IclR helix-turn-helix domain
      0.013   15.1   1.4      0.029   14.0   0.2    2.2  2  Sigma70_r4_2   Sigma-70, region 4
      0.021   14.6   0.1      0.021   14.6   0.1    1.9  1  HTH_23         Homeodomain-like domain
      0.031   14.1   0.7      0.031   14.1   0.7    2.5  3  HTH_AsnC-type  AsnC-type helix-turn-helix domain
        0.1   12.4   0.1       0.21   11.5   0.1    1.5  1  HTH_5          Bacterial regulatory protein, arsR family
       0.11   12.6   0.1       0.25   11.5   0.1    1.7  1  HTH_17         Helix-turn-helix domain
       0.14   12.3   0.0       0.25   11.5   0.0    1.4  1  HTH_22         HTH domain
       0.14   12.2   0.0       0.22   11.6   0.0    1.2  1  HTH_Mga        M protein trans-acting positive regulator (MGA
       0.16   11.8   1.0       0.24   11.2   0.0    1.8  1  TetR_N         Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> WYL  WYL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   0.2   3.8e-45     4e-42       2     172 .]     140     318 ..     139     318 .. 0.90

  Alignments for each domain:
  == domain 1  score: 144.2 bits;  conditional E-value: 3.8e-45
         WYL   2 vletlaeAieerrrvefrYrspagege.ertvePyglvlkngrwYLvaydekrdeirtfrldRiselelldetfepp.dfdlakylsksfgvfks...p 95 
                  l++la+A++  r+ve+rYr+  g+ge +r+vePyglvlk g+wYLva  +  d  rt+r+dR+ ++ + +e f+++ +fdl  y+ ++++ f +   +
  KIR62852.1 140 RLAELARAVWGDRVVELRYRR--GDGEvVRRVEPYGLVLKSGTWYLVA--RVGDGTRTYRVDRVVDVAPGGEVFDRDeGFDLGGYWGEQAEAFLRsmqR 234
                 6899*****************..88888********************..99**********************9776*********99999999999* PP

         WYL  96 vevkvrfspeaarrvrer...rfpdqkie....eedddgsvrvelpvesleellswllsfgdeveVlePaeLreevkeeaerll 172
                 ++v+vr+sp++ r +r     +f  ++++     +d+dg+v+  lp+es++ +++ +l++g+eveVl+P+eLr++v+++a+rl+
  KIR62852.1 235 TRVRVRLSPAGLRALRSApetPFGYAEATaaagAPDGDGWVVTWLPIESVDVAYHLVLRLGPEVEVLDPPELRARVAAAAARLA 318
                 **************875433366433322334599*********************************************9986 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.1   3.9e-19   4.1e-16       5      55 .]       9      60 ..       2      60 .. 0.90

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 3.9e-19
      HTH_11  5 ilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgvpIesepgr..GYr 55
                ++  Ll++r+ ++++eLA+eL+vS+rtv+rd+ aL+++gvp+++++gr  GYr
  KIR62852.1  9 LVL-LLQSREAMTAAELARELEVSERTVYRDVLALSAAGVPVYADRGRagGYR 60
                444.55**********************************************7 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   1.8e-07   0.00019      17      67 ..      11      61 ..       2      66 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.8e-07
                HHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTS.EEEETTT-TCEEE CS
        Rrf2 17 LakeeeeepvsseeiaerqnispsylekilakLrkagl.vksvrGkgGGyrL 67
                L ++++ e ++++e+a++ ++s++ + + +  L+ ag+ v + rG+ GGyrL
  KIR62852.1 11 LLLQSR-EAMTAAELARELEVSERTVYRDVLALSAAGVpVYADRGRAGGYRL 61
                334444.45****************************99************9 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2     9e-07   0.00095       5      43 ..      12      49 ..       9      73 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 9e-07
      HTH_29  5 llllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                ll ++e++ t +++A+ l +s+rtvyr + +  + G+  
  KIR62852.1 12 LLQSREAM-TAAELARELEVSERTVYRDVLALSAAGVPV 49
                78889999.9*****************887777777544 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.6e-06    0.0017       4      43 ..       8      47 ..       5      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.6e-06
    HTH_DeoR  4 qilellkqqgklsveelvellgvSeaTiRRDLneLeeqgl 43
                 ++ ll+++  ++  el+ +l+vSe T+ RD   L+++g+
  KIR62852.1  8 SLVLLLQSREAMTAAELARELEVSERTVYRDVLALSAAGV 47
                678899******************************9998 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   2.9e-06     0.003      18      52 ..      12      46 ..       6      52 .. 0.91
   2 ?   -2.8   0.0       6.7   7.1e+03      13      19 ..     103     109 ..      92     121 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.9e-06
                HHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCT CS
      HTH_20 18 aLaraegltaselaerldlskntlsyHLrvLeeag 52
                +L ++e++ta+ela++l++s  t+++ + +L+ ag
  KIR62852.1 12 LLQSREAMTAAELARELEVSERTVYRDVLALSAAG 46
                5689***********************99999998 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.7
                 HHHHHHH CS
      HTH_20  13 rrilraL 19 
                 +++l+aL
  KIR62852.1 103 LKVLAAL 109
                 4555555 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   6.8e-06    0.0072      16      51 ..      11      47 ..       7      62 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.8e-06
                HHH.HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTS CS
        TrmB 16 aLl.klgpatadeiaeelgvprskvYevLrsLedkGl 51
                 Ll +++ +ta e+a+el+v++ +vY+ +  L+ +G+
  KIR62852.1 11 LLLqSREAMTAAELARELEVSERTVYRDVLALSAAGV 47
                355899*********************9999999886 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   3.4e-05     0.036       6      31 ..      10      37 ..       7      37 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.4e-05
      HTH_28  6 ikllaaGh..svreaArelgisrrtvyr 31
                ++ll++ +  +++e+Arel +s+rtvyr
  KIR62852.1 10 VLLLQSREamTAAELARELEVSERTVYR 37
                6677755456*****************8 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.0   0.00064      0.67      11      44 ..      11      44 ..       2      47 .. 0.84
   2 ?    2.0   0.0      0.18   1.9e+02      12      27 ..     132     147 ..     127     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00064
                T-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHH CS
    HTH_IclR 11 alaeapqeltlselArrtglpkStvhRlLqtLve 44
                +l + ++++t +elAr++ ++  tv+R +  L  
  KIR62852.1 11 LLLQSREAMTAAELARELEVSERTVYRDVLALSA 44
                66778899******************97777766 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.18
                 -CTTBSS-BHHHHHHH CS
    HTH_IclR  12 laeapqeltlselArr 27 
                 ++ a ++ +l+elAr+
  KIR62852.1 132 FRDASPPPRLAELARA 147
                 77888999******97 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   2.8e-05     0.029      18      45 ..      10      37 ..       8      40 .. 0.90
   2 ?   -1.9   0.1       2.7   2.8e+03       6      17 ..     104     115 ..     103     116 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
                  HHHHHHTS---HHHHHHHHT--HHHHHH CS
  Sigma70_r4_2 18 ifllryleglsykEIAellgisegtVks 45
                  ++ll   e ++ +E A++l++se+tV++
    KIR62852.1 10 VLLLQSREAMTAAELARELEVSERTVYR 37
                  788888999*****************86 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.7
                   HHHTTS-HHHHH CS
  Sigma70_r4_2   6 ealaeLperqre 17 
                   + la+Lp+  r 
    KIR62852.1 104 KVLAALPPALRD 115
                   5799****9886 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1     2e-05     0.021      11      36 ..      12      37 ..       3      40 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2e-05
      HTH_23 11 llllaeGlsvreIAreLgvsrrTvyr 36
                ll  +e ++ +e AreL vs+rTvyr
  KIR62852.1 12 LLQSREAMTAAELARELEVSERTVYR 37
                33333499*****************8 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.7   2.9e-05     0.031       8      36 ..       9      37 ..       7      42 .. 0.91
   2 ?   -3.3   0.2       8.2   8.7e+03      21      27 ..     142     148 ..     141     148 .. 0.83
   3 ?   -2.9   0.1       6.1   6.4e+03      30      39 ..     302     311 ..     301     319 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.9e-05
  HTH_AsnC-type  8 ILeaLqedaRisyaeLAervGlSestvlr 36
                   ++ +Lq    ++ aeLA+++ +Se tv r
     KIR62852.1  9 LVLLLQSREAMTAAELARELEVSERTVYR 37
                   66799999*******************87 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8.2
  HTH_AsnC-type  21 aeLAerv 27 
                    aeLA++v
     KIR62852.1 142 AELARAV 148
                    7999987 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 6.1
  HTH_AsnC-type  30 SestvlrRvr 39 
                    ++++ ++Rv+
     KIR62852.1 302 DPPELRARVA 311
                    5666777765 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1    0.0002      0.21       7      34 ..       9      37 ..       5      47 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
                HHHHHTTSS.EEHHHHHHHHTS-HHHHHH CS
       HTH_5  7 ILklLaege.lcvcelaeelglsqstvSh 34
                ++ lL+++e +++ ela+el++s+ tv +
  KIR62852.1  9 LVLLLQSREaMTAAELARELEVSERTVYR 37
                5678888888*************999976 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00024      0.25       2      20 ..      19      37 ..      18      66 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00024
      HTH_17  2 ltveEaAelLgvsrstvyr 20
                +t +E+A+ L vs++tvyr
  KIR62852.1 19 MTAAELARELEVSERTVYR 37
                8*****************8 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00023      0.25      45      61 ..      22      38 ..      14      39 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00023
      HTH_22 45 ekvAekLgiSraTvYry 61
                 ++A++L++S+ TvYr 
  KIR62852.1 22 AELARELEVSERTVYRD 38
                679************95 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00021      0.22      11      41 ..       9      39 ..       6      47 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
     HTH_Mga 11 lelLteneksltldelakeLglseltlqsdi 41
                l lL+++++++t  ela eL  se+t+  d+
  KIR62852.1  9 LVLLLQSREAMTAAELARELEVSERTVYRDV 39
                689***********************97665 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00023      0.24      15      35 ..      17      37 ..      12      38 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00023
                TT--HHHHHHHHTSSHHHHHH CS
      TetR_N 15 dattvreIAkrAGvskgalYr 35
                +a+t +e+A+++ vs++++Yr
  KIR62852.1 17 EAMTAAELARELEVSERTVYR 37
                699*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2392.22
//
Query:       KIR62853.1  [L=271]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-31  108.3  14.3    6.1e-31  108.0  14.3    1.1  1  EI24      Etoposide-induced protein 2.4 (EI24)


Domain annotation for each model (and alignments):
>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0  14.3   3.4e-35   6.1e-31       2     178 .]      25     243 ..      24     243 .. 0.89

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 3.4e-35
                 HHHHHHHHTS.TTTHHHHHHHHHHHHHHHHHHHHHHH................-.........TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EI24   2 llrglglllsspkllallllplllnlllfllllvlll................w.........vllasllvllllllplwlfplvalllaapfygllae 75 
                 llrg+gl ++sp+l+ l ++p l+++ lf++++++l+                w         v++ + ++  + ll++++f++v+l+++ pfy++++e
  KIR62853.1  25 LLRGIGLYVRSPGLMLLGIVPALISGTLFVAAFATLVyfvddlaalvtpfaddWsgtarslvrVVAGLAFLGVGGLLAVLTFTAVTLAIGDPFYEKISE 123
                 689***************************99999889999999999998888799999666655556666666677799999**************** PP

                 HHHH.HH............CCTTSHHHHHHHHHHHHHHHHHHHHH.HHTTHHH....HHHHHHHHHHHHHHHHHHHHHH...-HHHHHHHHHCTHHHHH CS
        EI24  76 kvekrhl............glvkslaeslkslllllllllvllpl.liPvvglilsplllswltayfycfeyldlaagr...sleerrallerrrayfl 158
                 +ve+r              +l +s+ +sl+ +++ +l+ ++l++  +iPvvg++++p++++ + ++f+++e++  +++r   +l++rr ll++ r++ l
  KIR62853.1 124 RVEERLGgtpgaveapfwgSLRRSVVDSLRLVAISVLVGIPLFAAgFIPVVGQTVVPVIGAAVGGWFLALELAGTPFYRrgmRLPDRRTLLKADRPTTL 222
                 ***97636676777766666677777*******************888*****************************99999***************** PP

                 HHHHHHHHHTTSCCHHCTH.H CS
        EI24 159 gfGllvslllliPllnllf.P 178
                 gfG++v++++liPl ++l+ P
  KIR62853.1 223 GFGVAVFVCFLIPLGAVLVmP 243
                 *****************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2176.61
//
Query:       KIR62854.1  [L=165]
Description: hypothetical protein TK50_18085 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1255.28
//
Query:       KIR62855.1  [L=138]
Description: endoribonuclease L-PSP [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-20   72.7   0.5    2.9e-20   72.5   0.5    1.1  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.5   1.6e-24   2.9e-20       9     121 .]      19     133 ..      11     133 .. 0.83

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 1.6e-24
                    SS-BSEEE.ETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGG..HHHHHHHHHHHSSSSTS--EEEE CS
  Ribonuc_L-PSP   9 apYsqavk.agnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladied..faevnevyaeafdelkeaParsa 101
                     +Y   v+   +lv+ +G  pld++  ++++gd+++q+rq+++nl+ +Laaaga l+dvVk+tv++a+  +    +  ev+ + f +++  P +++
     KIR62855.1  19 YAYAATVDpPARLVFAAGACPLDADGRTVAPGDPAAQARQVMANLEVALAAAGARLADVVKTTVYVASTRQadLVAAWEVVRDTFGDHE--PPSTL 112
                    456666667889***********7555555**************************************998223444456666666665..***** PP

                    EE-SBSG.GG-SEEEEEEEE- CS
  Ribonuc_L-PSP 102 veVaaLp.kgakvEIeaiavv 121
                     +V+ L   + +vE+ea+a+v
     KIR62855.1 113 LGVTVLGyDDQLVEVEAVAAV 133
                    *******9**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1095.34
//
Query:       KIR62856.1  [L=335]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-39  133.5   3.3    8.7e-39  133.5   3.3    2.4  3  Peripla_BP_3    Periplasmic binding protein-like domain
    3.2e-25   89.1   0.0    4.8e-25   88.5   0.0    1.2  1  Peripla_BP_1    Periplasmic binding proteins and sugar bindin
    9.1e-17   60.6   1.8    2.3e-16   59.3   1.8    1.8  1  LacI            Bacterial regulatory proteins, lacI family
    7.6e-13   48.6   0.0    2.4e-12   47.0   0.0    1.8  2  Peripla_BP_4    Periplasmic binding protein domain
    1.7e-06   28.0   0.3    1.7e-06   28.0   0.3    1.7  2  Peripla_BP_6    Periplasmic binding protein
    0.00039   20.7   1.6    0.00039   20.7   1.6    2.7  2  HTH_31          Helix-turn-helix domain
    0.00053   20.0   0.0     0.0013   18.7   0.0    1.6  1  HTH_3           Helix-turn-helix
     0.0078   16.0   0.3      0.025   14.4   0.3    1.9  1  HTH_IclR        IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.029   14.1   0.1       0.12   12.2   0.1    2.1  1  TetR_N          Bacterial regulatory proteins, tetR family
      0.039   13.8   1.1        0.2   11.5   0.3    2.6  3  MarR_2          MarR family
       0.04   13.4   1.2       0.64    9.6   0.1    3.0  3  Sigma70_r4      Sigma-70, region 4
      0.044   13.5   0.2      0.098   12.4   0.2    1.5  1  HTH_38          Helix-turn-helix domain
      0.053   13.5   0.0       0.13   12.3   0.0    1.6  1  HTH_19          Helix-turn-helix domain
      0.097   12.6   0.0       0.28   11.2   0.0    1.7  2  rRNA_methylase  Putative rRNA methylase
      0.099   12.5   0.1       0.37   10.7   0.1    2.0  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
       0.11   12.3   1.2       0.22   11.4   0.1    2.1  2  HTH_23          Homeodomain-like domain
       0.17   11.9   0.1       0.39   10.7   0.1    1.6  1  HTH_6           Helix-turn-helix domain, rpiR family
       0.18   12.1   0.1        1.6    9.1   0.0    2.3  2  MHB             Haemophore, haem-binding
       0.27   11.4   0.9       0.58   10.3   0.1    2.0  2  HTH_7           Helix-turn-helix domain of resolvase


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.95     9e+02     122     140 ..      30      48 ..      16      64 .. 0.68
   2 ?   -1.1   0.0       2.2     2e+03       4      98 ..      59     149 ..      56     151 .. 0.45
   3 !  133.5   3.3   9.2e-42   8.7e-39       1     165 [.     178     334 ..     178     335 .] 0.94

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.95
                   -EEEE--HHHHHHHHHHHH CS
  Peripla_BP_3 122 lTtvrqpleelGraaaell 140
                    Ttv+ p++e  r+a+  l
    KIR62856.1  30 STTVAEPIREAVRQAVAEL 48 
                   4666666666666666544 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.2
                   HHHCS--EEEEEE....--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   4 LvelGhrriafig....gegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalPtAviaasDelAlgvlqalrea 96 
                   Lv ++  +ia++     +   ++++    + rg++q+le++  +l   ++    pa++a++++        ++++ ++v+ as   A  + ++l++ 
    KIR62856.1  59 LVTQRTDSIALVLpeeaTRVFSDDQVFPSIIRGVAQELEAADKQLVLMLA--GSPAGHARVERYT------TGRHVDGVVFASLHGADPLPARLARL 147
                   55666666666663333333333333444445555555444444333322..3334444444443......11234566666666666666666665 PP

                   T- CS
  Peripla_BP_3  97 gl 98 
                   g+
    KIR62856.1 148 GI 149
                   55 PP

  == domain 3  score: 133.5 bits;  conditional E-value: 9.2e-42
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SE..EEEESSCCHHHHHHHHHCC CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalPt..AviaasDelAlgvlqalre 95 
                   v+hL+  G rria i+  g+++  a  er++g+r al+e+glp ++ +++ +++++aaa+r+ l  +     a+P+  Av+aasD +A+++++ lre
    KIR62856.1 178 VRHLLGSGRRRIATIA--GPQDMFAGVERLAGYRAALAEAGLPERVAYGDFTRESGAAAMRQLL--D-----AHPDldAVFAASDLMAHAAMRTLRE 265
                   79**************..99999**************************************977..2.....267455******************* PP

                   TT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GG CS
  Peripla_BP_3  96 aglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReS 165
                   ag rvP d++ igfdd+e aa+++PplTtvrqp+ +lGr+a ++ll++ +ge+ +p  vl p+elv+R+S
    KIR62856.1 266 AGRRVPADVAMIGFDDIETAAYTDPPLTTVRQPILDLGREATRQLLRMAAGEDVEPALVL-PTELVLRAS 334
                   ************************************************999998888875.8******99 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.0   5.1e-28   4.8e-25       2     257 ..      65     312 ..      64     331 .. 0.88

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 5.1e-28
                   EEEEEEES-T.TSHH.....HHHHHHHHHHHHHHHTEEEEEEE-SSHHHHHHHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHH.T-EEEEESS--B- CS
  Peripla_BP_1   2 lklglvlpql.dePf.....fldlvkgitkaakehgvdvlllaageeedlakaidllkakgidgliiatsdtsfdditakaes.gipvialedaida 91 
                   +++ lvlp++ +  f     f +++ g+ +++++ + +++l+ ag+ +  a+  +    + +dg++ a++ +  d + a  +  gipv+  ++    
    KIR62856.1  65 DSIALVLPEEaTRVFsddqvFPSIIRGVAQELEAADKQLVLMLAGSPAGHARVERYTTGRHVDGVVFASLHGA-DPLPARLARlGIPVVCSGRF-LG 159
                   7889999998645556666699**************************999999999****************.6666555555*****88887.66 PP

                   TTTS-EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SS CS
  Peripla_BP_1  92 pdgvPcvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivain 188
                   ++gvP v  d     +++ ++L+  g +r ia ++gp+   +  er  G++aalaeaGl      va g+ ++e +a a+ +ll  hP++da+ a +
    KIR62856.1 160 DVGVPYVDVDHVGGVTRAVRHLLGSGRRR-IATIAGPQDMFAGVERLAGYRAALAEAGL---PERVAYGDFTRESGAAAMRQLLDAHPDLDAVFAAS 252
                   67***99999999999*************.*****************************...788******************************** PP

                   HHHHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHH CS
  Peripla_BP_1 189 deaalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlq 257
                   d +a  a++ l+ +G  + + +v     ++ ++d +   +     ++pl++   p   lGr+a  ++l 
    KIR62856.1 253 DLMAHAAMRTLREAG-RRVPADV-----AMIGFDDI---ETAAYTDPPLTTVRQPILDLGREATRQLLR 312
                   ***************.799999*.....999****9...555566788888888888999999998887 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   1.8   2.4e-19   2.3e-16       1      46 []       8      53 ..       8      53 .. 0.98

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 2.4e-19
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                t+  VAr+AGVS aTVSrv+n++ +V+e +re V +a++el+Y+Pn
  KIR62856.1  8 TLEAVARRAGVSRATVSRVVNGSTTVAEPIREAVRQAVAELGYVPN 53
                7888*****************************************9 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.7   1.6e+03       9      33 ..      30      54 ..      24      68 .. 0.74
   2 !   47.0   0.0   2.6e-15   2.4e-12      54     257 ..     124     317 ..      79     318 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.7
                  STCHHHHHHHHHHHHHHHTTCEEEE CS
  Peripla_BP_4  9 snpffsaaregleeaakelgaevtv 33
                  s +  +++re++++a++elg+  ++
    KIR62856.1 30 STTVAEPIREAVRQAVAELGYVPNL 54
                  4457788999999999999997766 PP

  == domain 2  score: 47.0 bits;  conditional E-value: 2.6e-15
                   TT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHH CS
  Peripla_BP_4  54 kgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlk 150
                   ++vdg++ a+ ++  + p  ++++  GIpVv+  ++   ++ ++ yv  d     + + + l+         ++ +aG ++  +  er++g r++l+
    KIR62856.1 124 RHVDGVVFASLHG--ADPLPARLARLGIPVVCSGRF--LGDVGVPYVDVDHVGGVTRAVRHLLGSGR---RRIATIAGPQDMFAGVERLAGYRAALA 213
                   5688888888886..777778899999999999999..99999999999999888888877776666...67************************* PP

                   H-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSCCHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHH CS
  Peripla_BP_4 151 eypgikivaevaganwdaekaqqalealltanp.ldgilaandgmaegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaa 246
                   e++  + va   +++ ++e +  a+ +ll a+p ld+++aa+d ma +a+++l++ag++    v+ ++ ++   +a  d  ++ tv q+  +lg+ a
    KIR62856.1 214 EAGLPERVA---YGDFTRESGAAAMRQLLDAHPdLDAVFAASDLMAHAAMRTLREAGRRVPADVAMIGFDDIETAAYTDPPLT-TVRQPILDLGREA 306
                   *66777776...88****************9966***********************94433377777777777788888888.9999999999999 PP

                   HHHHHHHHTT- CS
  Peripla_BP_4 247 velavallkGk 257
                   ++ ++++++G+
    KIR62856.1 307 TRQLLRMAAGE 317
                   99999999998 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1         2   1.9e+03      80     305 ..      32      42 ..       3      65 .. 0.47
   2 !   28.0   0.3   1.8e-09   1.7e-06      59     261 ..     115     310 ..     108     321 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2
                   HHHHHHHHHHHHHT-EEEESS-HHCCTTSTTEEESS--HHHHHHHHHHHHHHHTTSCEEEEEEESSHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTH CS
  Peripla_BP_6  80 avaaavaevlakdgvpvigpagltgekcspyvfslgpsysaqasalveylakelggkkvalvyadyafgregiaalkaaakaaGgevvgeepvplgt 176
                    va+ +                                                                                           
    KIR62856.1  32 TVAEPI------------------------------------------------------------------------------------------- 37 
                   122222........................................................................................... PP

                   HHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHHHHHHHHHHHHTTEEEEESCSTCCCSHHHHHHHHHHHHHHTTGG CS
  Peripla_BP_6 177 tdfsaqvlqikaagadavllagtgadlaallkaaaeaGldakrillvswsgseedlkalggeaaegvlavtpyfpdldnpavrafvaayeaayggap 273
                                                                                                                    
    KIR62856.1   - -------------------------------------------------------------------------------------------------   -
                   ................................................................................................. PP

                   C--HHHHHHHHHHHHHHHHHHCCTHCCHHHHH CS
  Peripla_BP_6 274 ppsqfaaggyiaadlllealkaagsltreavr 305
                                              reavr
    KIR62856.1  38 ---------------------------REAVR 42 
                   ...........................22222 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 1.8e-09
                   HHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEEESS-HHCCTTSTTEEESS--HHHHHHHHHHHHHHHTTSCEEEEEE..ESSHHHHHHHH CS
  Peripla_BP_6  59 eaarrlvdqdgvdalvgplssavaaavaevlakdgvpvigpagltgekcspyvfslgpsysaqasalveylakelggkkvalvy..adyafgregia 153
                   + ++r+ ++++vd++v +   + a  +   la+ g+pv++ +   g+ + pyv     ++   ++++v++l+   g++++a+++  +d  +g e  a
    KIR62856.1 115 ARVERYTTGRHVDGVVFASLHG-ADPLPARLARLGIPVVCSGRFLGDVGVPYV---DVDHVGGVTRAVRHLLG-SGRRRIATIAgpQDMFAGVERLA 206
                   6688999999999999987777.88999999*********9888888888875...7889999********99.5********877889999***** PP

                   HHHHHHHCCTEE.EEEEEEE-TTHHHHHHHHHHHHTTT-SE..EEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHHHHHHHHHHHHTTEEEEE CS
  Peripla_BP_6 154 alkaaakaaGge.vvgeepvplgttdfsaqvlqikaagada..vllagtgadlaallkaaaeaGldakrillvswsgseedlkalggeaaegvlavt 247
                   +++aa+++aG+   v++ +  ++ ++ +a+++q+ +a++d   v++ +   ++ a++++++eaG +  +  +++ ++++ + +a+  +    +++v 
    KIR62856.1 207 GYRAALAEAGLPeRVAYGD--FTRESGAAAMRQLLDAHPDLdaVFA-ASDLMAHAAMRTLREAGRRV-PADVAMIGFDDIETAAYTDP---PLTTVR 296
                   **********997554444..4467789************994555.55558************664.25566666666555555443...455555 PP

                   SCSTCCCSHHHHHH CS
  Peripla_BP_6 248 pyfpdldnpavraf 261
                   +   dl  +a+r++
    KIR62856.1 297 QPILDLGREATRQL 310
                   56666666666665 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   1.6   4.1e-07   0.00039      16      51 ..       8      45 ..       3      57 .. 0.73
   2 ?   -2.5   0.0       7.3   6.9e+03      29      39 ..     115     125 ..     112     139 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.1e-07
      HTH_31 16 sqeevAerlgvsestlsrlEqGrrgrp...spavleala 51
                ++e+vA+r+gvs++t+sr+ +G  + +    ++++++++
  KIR62856.1  8 TLEAVARRAGVSRATVSRVVNGSTT-VaepIREAVRQAV 45
                89*********************97.5233333444443 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7.3
      HTH_31  29 stlsrlEqGrr 39 
                 +++ r+ +Gr+
  KIR62856.1 115 ARVERYTTGRH 125
                 56788888887 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.4e-06    0.0013      11      34 ..       8      31 ..       8      36 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.4e-06
                HHHHHHHHHTSSHHHHHHHHTTSS CS
       HTH_3 11 sqeeLAeklGvsrstisriEnGer 34
                ++e +A+++Gvsr+t+sr  nG +
  KIR62856.1  8 TLEAVARRAGVSRATVSRVVNGST 31
                7899******************76 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.3   2.6e-05     0.025      15      39 ..       3      27 ..       1      29 [. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.6e-05
                TBSS-BHHHHHHHHTS-HHHHHHHH CS
    HTH_IclR 15 apqeltlselArrtglpkStvhRlL 39
                ++q+ tl  +Arr+g++++tv+R +
  KIR62856.1  3 TAQRPTLEAVARRAGVSRATVSRVV 27
                456669*****************86 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00013      0.12      18      34 ..       8      24 ..       5      25 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
                -HHHHHHHHTSSHHHHH CS
      TetR_N 18 tvreIAkrAGvskgalY 34
                t++++A+rAGvs++++ 
  KIR62856.1  8 TLEAVARRAGVSRATVS 24
                899************86 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   0.00022       0.2      22      43 ..       7      28 ..       2      29 .. 0.87
   2 ?   -3.0   0.0       7.5     7e+03      45      56 ..      54      65 ..      51      66 .. 0.73
   3 ?   -2.3   0.0       4.5   4.2e+03      37      46 ..     173     182 ..     168     185 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00022
                EEHHHHHHHHTSSHHHHHHHHH CS
      MarR_2 22 ltvgelarrlglsksavsrilk 43
                 t  ++arr g+s+++vsr+++
  KIR62856.1  7 PTLEAVARRAGVSRATVSRVVN 28
                488899**************98 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.5
                HHHTTSEEEEES CS
      MarR_2 45 LvaaGLverrpg 56
                L a+ Lv++r++
  KIR62856.1 54 LAARSLVTQRTD 65
                677888888876 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 4.5
                 HHHHHHHHHH CS
      MarR_2  37 avsrilkrLv 46 
                  v+r+++ L 
  KIR62856.1 173 GVTRAVRHLL 182
                 6899998885 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00068      0.64      22      39 ..       8      25 ..       5      28 .. 0.92
   2 ?   -2.3   0.0       3.4   3.2e+03      20      28 ..     260     268 ..     256     270 .. 0.62
   3 ?    0.6   0.0      0.42     4e+02      30      43 ..     300     313 ..     299     315 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00068
                -HHHHHHHHTS-HHHHHH CS
  Sigma70_r4 22 TleEIgerlgiSrerVrq 39
                Tle +++r g+Sr +V++
  KIR62856.1  8 TLEAVARRAGVSRATVSR 25
                9***************98 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.4
                 T--HHHHHH CS
  Sigma70_r4  20 glTleEIge 28 
                  +Tl E g+
  KIR62856.1 260 MRTLREAGR 268
                 356666666 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.42
                 HTS-HHHHHHHHHH CS
  Sigma70_r4  30 lgiSrerVrqiekr 43 
                 l++ re+ rq+++ 
  KIR62856.1 300 LDLGREATRQLLRM 313
                 8999*******985 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2    0.0001     0.098      22      41 ..       8      27 ..       4      28 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
      HTH_38 22 slreIArrLgrspsTIsREl 41
                +l ++Arr g+s+ T+sR +
  KIR62856.1  8 TLEAVARRAGVSRATVSRVV 27
                5779**************87 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00013      0.13      14      56 ..       8      52 ..       7      59 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00013
      HTH_19 14 tqeelaerlgisrskisaiEngkkdvps..aelllkiaealgidl 56
                t+e++a+r+g+sr+  s   ng++ v++  +e +++++ +lg+ +
  KIR62856.1  8 TLEAVARRAGVSRATVSRVVNGSTTVAEpiREAVRQAVAELGYVP 52
                89********************98788888888899988888766 PP

>> rRNA_methylase  Putative rRNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0003      0.28      25      71 ..      21      68 ..       2      80 .. 0.80
   2 ?   -2.1   0.0       3.7   3.5e+03      32      50 ..     112     131 ..      92     132 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0003
                    GSEEEEES-GGGGGGT--S-EEEEEEEESB-CT.S-TTSB--HHHHHH CS
  rRNA_methylase 25 ervelildsHekleeyvkekvkavifNLGYLPg.gdksivTkaettlk 71
                    ++v+ + ++ ++++e ++e v+ ++  LGY+P+ + +s+vT+++ +++
      KIR62856.1 21 ATVSRVVNGSTTVAEPIREAVRQAVAELGYVPNlAARSLVTQRTDSIA 68
                    3377888899999999****************977999***9999885 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.7
                     S-GGGGGGT--.S-EEEEEE CS
  rRNA_methylase  32 dsHekleeyvk.ekvkavif 50 
                     ++H+++e+y++ ++v+ v+f
      KIR62856.1 112 AGHARVERYTTgRHVDGVVF 131
                     68999999999888999888 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00039      0.37      12      35 ..      10      33 ..       8      45 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00039
  YdaS_antitoxin 12 kaLAealgvsqqaVsqWlkgkkqv 35
                     a+A++ gvs+++Vs++++g+++v
      KIR62856.1 10 EAVARRAGVSRATVSRVVNGSTTV 33
                    589****************98875 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00023      0.22      19      39 ..       8      28 ..       4      30 .. 0.90
   2 ?   -3.2   0.1         9   8.5e+03      10      25 ..     177     191 ..     176     193 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00023
      HTH_23 19 svreIAreLgvsrrTvyrwlk 39
                + +++Ar+ gvsr Tv+r+++
  KIR62856.1  8 TLEAVARRAGVSRATVSRVVN 28
                5689**************985 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 9
      HTH_23  10 illllaeGlsvreIAr 25 
                 ++++l+ G  +r+IA+
  KIR62856.1 177 AVRHLL-GSGRRRIAT 191
                 677777.888888886 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00042      0.39      31      54 ..       3      26 ..       1      28 [. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00042
                --TT--HHHHHHHTT--HHHHHHH CS
       HTH_6 31 kaielsikalAkaaavSeativrf 54
                +a++++++a+A  a+vS+at+ r+
  KIR62856.1  3 TAQRPTLEAVARRAGVSRATVSRV 26
                78999****************997 PP

>> MHB  Haemophore, haem-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0017       1.6      12      43 ..     228     259 ..     225     267 .. 0.81
   2 ?   -0.2   0.0       1.3   1.2e+03      62      73 ..     292     303 ..     281     305 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0017
         MHB  12 vsgVaastsaYLdthPdvnqaltslkgqprdq 43 
                 + + aa++++ Ld+hPd+++++ +   + + +
  KIR62856.1 228 RESGAAAMRQLLDAHPDLDAVFAASDLMAHAA 259
                 567789****************9876666555 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.3
         MHB  62 LrgIrqPltdlk 73 
                 L+ +rqP+ dl 
  KIR62856.1 292 LTTVRQPILDLG 303
                 899*****9986 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00061      0.58      26      43 ..      11      28 ..       8      30 .. 0.88
   2 ?   -3.1   0.0       9.1   8.6e+03      14      28 ..     178     193 ..     177     193 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00061
                TTSSSS---SSSS--SS- CS
       HTH_7 26 kIAkevnisRsTvYRyla 43
                ++A++ ++sR+Tv R+ +
  KIR62856.1 11 AVARRAGVSRATVSRVVN 28
                79***********99987 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.1
                 GGSSTTTT.--STTTS CS
       HTH_7  14 vvkLleeG.isiskIA 28 
                 v+ Ll +G   i++IA
  KIR62856.1 178 VRHLLGSGrRRIATIA 193
                 6678888877777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 2877.94
//
Query:       KIR62857.1  [L=459]
Description: beta-glucosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     2e-158  527.6   0.0   2.3e-158  527.4   0.0    1.0  1  Glyco_hydro_1  Glycosyl hydrolase family 1


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  527.4   0.0  1.3e-162  2.3e-158       4     452 ..       8     458 ..       5     459 .] 0.96

  Alignments for each domain:
  == domain 1  score: 527.4 bits;  conditional E-value: 1.3e-162
                    GS-TT-EEEEE--HHHHH--TTSTT---BHHHHHHHHGGGSTTS---SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHSTTSTT---HHHHHH CS
  Glyco_hydro_1   4 tfpedFlwgaataayqiEGawnedGkgesiwDtftetpgkvlegsngdvacdsYhrykeDvallkelgvkayrfSisWpRilPkGegeinekGlay 99 
                    +fp++F+wgaata+yqiEGa ++dG+g+siwDtf++tpgkv+ g++gdvacd+Yhry+ Dval++elg+kayrfSi+WpRi P+G+g ++++Gl++
     KIR62857.1   8 RFPDNFVWGAATASYQIEGAARDDGRGPSIWDTFSRTPGKVFAGHTGDVACDHYHRYADDVALMAELGLKAYRFSIAWPRIQPDGTGPVEPRGLDF 103
                    7*********************************************************************************************** PP

                    HHHHHHHHHHTT-EEEEEEESS--BHHHHHH-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHTSS-STT-S-TTTHHHHHHHH CS
  Glyco_hydro_1 100 YerLidelleagieplvTlyHwdlPqaLqdeGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvvallgyltgefaPgkkdleaayeaaHn 195
                    Y+rL+d+ll +gi p+vTlyHwdlPqaL+d Ggw+nr++ ++f +ya+ v  r+gd++++w+T+nEp+++a+lgy+ g++aPg++d  aa++a H+
     KIR62857.1 104 YDRLTDALLGRGIDPIVTLYHWDLPQALEDRGGWTNRETAEHFATYAAAVHGRLGDRIRTWTTLNEPWCSAYLGYGNGVHAPGVSDPGAAFTAVHH 199
                    ************************************************************************************************ PP

                    HHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHH.HHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGGG...S----HHHHHHHTT--SE CS
  Glyco_hydro_1 196 lllaharavklykevaqkgkigivlnlslaeplseseedk.eaaeraleflngwfldpvvkGdYpeemkellrer.galpeiteedkellkgkadf 289
                    l+l h+ av++ +  + +  +gi+ln + ++p++ +++ + +a+   + ++n+ fldp+    Yp+++ e + ++   + +++++d +l+++++d+
     KIR62857.1 200 LMLGHGLAVRALRAGGAE-VVGITLNPAEVQPADRDSAADaAAVRLVDGLQNRIFLDPLTGAGYPADVLEHVSRMvDPATFLRDGDEKLIAAPIDL 294
                    ************998876.69************9987777488888899************99*******999996778899************** PP

                    EEEEEEEEEEEEE--...-STT---SSGGGGG-SBSS-B-SSSS-B-HHHHHHHHHHHHHTS----EEEEE----EE-BSSS..HHH--HHHHHHH CS
  Glyco_hydro_1 290 lglnyYtsrlvknkeseeaslskteekkleeevdpslpktdigwiiepeglrkllellkkeYqklpiyiteNGlgakdeiee..gkveDdkRidYl 383
                    lg+nyY  ++v+  +     +    ++++ +      p +d+gw+iep gl +ll +l  +Y  lp++iteNG ++ d +++  g+v D +Ri Yl
     KIR62857.1 295 LGINYYAPTYVAGRPDGAGGSAWPGTEGAVQFLPAAGPVSDMGWAIEPAGLGRLLDRLAADYPGLPLMITENGGAFPDRTTDsaGRVADADRIAYL 390
                    *************997666666666667777777999*****************************************9998899*********** PP

                    HHHHHHHHHHHHTT--EEEEEEE-SB----GGGTTSEE--SEEEETTTTTEEEE-HHHHHHHHHHH-SS CS
  Glyco_hydro_1 384 kehlnevkkaiedgvdlkgYvawsllDnfewaegyskrfGlvyvdrnetleRtpkkSakwykeviekng 452
                      hl +v+ ai  gvdl+gY++wsllDn+ewaegy+krfG+v+vd + t++Rtpk+Sa+wy+evi++ng
     KIR62857.1 391 DGHLRAVHAAIGRGVDLRGYLVWSLLDNYEWAEGYRKRFGIVHVD-YLTQRRTPKASARWYQEVISRNG 458
                    *********************************************.99******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 3003.66
//
Query:       KIR62858.1  [L=277]
Description: sugar ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-21   75.0  11.5    6.1e-21   75.0  11.5    2.3  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.33   10.7  11.9        5.2    6.8  11.9    2.6  1  DUF3159       Protein of unknown function (DUF3159)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   3.4     0.081   7.2e+02      15      44 ..       9      60 ..       4      91 .. 0.51
   2 !   75.0  11.5   6.8e-25   6.1e-21       3     176 ..      92     263 ..      87     270 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.081
  BPD_transp_1 15 kldkllrpliivllslPsfvlaillvlvf..........................v 44
                  +l+++ + ++ +l+ +P+++++++    +                           
    KIR62858.1  9 RLTYAALAVSALLSVFPIYWMFVV----AsrssdamgqipppvtpggnlganiarL 60
                  566667777777777777774444....1233444444455555555555544440 PP

  == domain 2  score: 75.0 bits;  conditional E-value: 6.8e-25
  BPD_transp_1   3 llGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilg.hlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqif 98 
                   l+G+  a + ++++++ l+ +ii+++++P+ + +i+l+l   ++++l  +  lp++i+ +l +++ v+++r+ a ++++++l+eaar++G+++ +i+
    KIR62858.1  92 LAGFAFA-KLRFRGRNGLLLVIIATMMIPTQLGVIPLYL---LMTKLNwNDRLPAVIVPALVTGFGVFMMRQYASQAVSTELIEAARMDGCGTARIY 184
                   6677777.9***********************6666663...457777245566888888888999999**************************** PP

  BPD_transp_1  99 rkvvlPnalppiitglilafggllggavlleflgswpG.....lgtllleailgydyseisnggvlalviavlllnlvadilq 176
                   ++vvlP++ p ++ + +l+f+  ++++++++ ++++p      l+++ l+   ++d+s     ++  ++ia+l+l+lv+ ++ 
    KIR62858.1 185 WNVVLPALRPAAAVLGLLTFMTTWNDFLWPYAVLNDPEnptvqLSLRALSDGYYQDMS----QVFTGTAIATLPLLLVFVLFG 263
                   *************************************999555555555555555555....566666677777766666665 PP

>> DUF3159  Protein of unknown function (DUF3159)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  11.9   0.00058       5.2      63     114 ..      52     103 ..       2     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00058
     DUF3159  63 aisavialrtgeakdffllgiltnlvyavvllvsilvrwPlvGlvvgavtge 114
                  ++a ia    +  ++fl g++ ++++av ++vs++    l+G++++ ++ +
  KIR62858.1  52 NLGANIARLFDNTDAYFLTGLINSAIVAVTVTVSVVFFSTLAGFAFAKLRFR 103
                 57899999999*********************************99888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2097.24
//
Query:       KIR62859.1  [L=434]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-27   97.4  12.4    1.8e-27   96.9  12.4    1.2  1  SBP_bac_8  Bacterial extracellular solute-binding protein
    3.2e-15   56.9  13.9    8.1e-15   55.6  13.9    1.6  1  SBP_bac_1  Bacterial extracellular solute-binding protein
    0.00094   18.7   1.1      0.002   17.6   1.1    1.7  1  SBP_bac_6  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.9  12.4     3e-31   1.8e-27       2     277 ..      52     366 ..      51     370 .. 0.83

  Alignments for each domain:
  == domain 1  score: 96.9 bits;  conditional E-value: 3e-31
                 HHHHHHHH-.TEEEE.EEE-.-SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHH..TTSB--GGGS.TTHHH......-HHHHHTT--TS..---- CS
   SBP_bac_8   2 lakefekkt.gvkvn.vvta.asndleqklkaalaagtapdidvvwanedalatlae..eglladlsdl.dnldd......ltdalaavgydgk.lygv 87 
                 l +e+ +++ +vk+    t  + +++ +kl+  laag++ + dvv ++e+ l ++++  ++ +  l++   +l++      +    +a + dgk l g+
  KIR62859.1  52 LYQEYMAAHpDVKIVeRGTGgNLDEYSPKLTQWLAAGKG-AGDVVAIEEGLLVEYKAnpQNFVNLLDHGaAELKGnfldwkW---NQALTADGKqLIGL 146
                 6789999**99*965266666779**************8.559999*9***9999998788888777433455556654333...4455668887**** PP

                 EEEEEEE-EEEEEHHHHHHS...........---BHHHHHHHHHHHHHH-...SEGG---G.....GGGGGTHHETTEE---H........HHH.HHHH CS
   SBP_bac_8  88 Pyasetpyvliynkdlleka..........edpktwdellaaakklkgkf...glpdpasg.....wlqaallakdgksldddg......gkdglkeal 162
                   +++  ++++y+ dl+ ka          + + tw++++a+ +k+k ++   ++ d+a++     +lq+a  a +g+ + d+       +++++ +a+
  KIR62859.1 147 GTDVGG-MAMCYRSDLFAKAglptqrdevsKLWPTWQDYVATGEKFKAANtgaAFLDSATNifntiVLQTAGNA-QGYHYYDTAnnlvvdSNPAVRQAW 243
                 *****6.9***********99999999999999*************9777666778999986555555555555.666665554467888899999999 PP

                 HHHHHHHHTT-..EE-S...--SSTTTTTSBSEEEE-TTHHHHHH.....-TTTSEEEE.--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHH CS
   SBP_bac_8 163 ellkklkdngk..tydtg.adavsefanGevaftingswdiaaaq.....kagkklgai.vpkqgsfaggkglavpknaknedlaAldFlkwltspenq 252
                 +   ++ d g    y+++ +++vs+f++ ++a++  + w    ++     +a+ k+ ++ vp +g  +gg++lavpk++k++++ A++++k+lts+ +q
  KIR62859.1 244 DTTMDILDSGLsgKYGSWsEEWVSAFKQAKFATIACPAWMTGVIEgnagpAAKGKWDIAqVPGNGGNWGGSFLAVPKQSKHQAE-AIELAKFLTSAKGQ 341
                 99999999997665666548*************************866655567*****9***********************7.************** PP

                 HHHHHHH---BS-S-TTTHHHHHH- CS
   SBP_bac_8 253 aalaektgyipvnksaalspevkkd 277
                    +++ g +p+n+ a ++p+v++ 
  KIR62859.1 342 IGAFKAKGPLPSNPQALDDPAVAES 366
                 *********************9976 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6  13.9   1.3e-18   8.1e-15      10     314 ..      49     341 ..      46     342 .. 0.78

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 1.3e-18
                 HHHHHHHHHHHHHTTEEEEEEEECHHHHHH...HHHHHHHTTSSSCSEEEECGGHHHHHHHT.....TSBECCHHHHHHTTECTTCCTEEEEHHHHTHH CS
   SBP_bac_1  10 lqalvakafekehpgikVeiesvgsgslaq...kltlaiaaGdgpaDviavdndwiarlaka.....glllpldpyvkaylapgvkdaadklsssvlpk 100
                 +q+l  ++++++hp++k++   + +g+l +   klt  +aaG+g+ Dv+a++ + + +++ +     +ll    + +k +  ++++  a+ +++++l  
  KIR62859.1  49 YQELY-QEYMAAHPDVKIVERGT-GGNLDEyspKLTQWLAAGKGAGDVVAIEEGLLVEYKANpqnfvNLLDHGAAELKGNFLDWKWNQALTADGKQL-- 143
                 67777.99*****9999986554.555555777******************9999998877777666666666666666666666666666555555.. PP

                 HHCEEEES.EEEE.EEEEEEEETTTHHCTTGGG........SHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHC CS
   SBP_bac_1 101 ildskvly.vPly.aargliYNkdlfekagldp........pwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggld 189
                          + ++ + +++ Y+ dlf+kagl+         ++tW++ v+ ++k+k+++ +       ++    +++f                    +
  KIR62859.1 144 -------IgLGTDvGGMAMCYRSDLFAKAGLPTqrdevsklWPTWQDYVATGEKFKAANTGA------AFLDSATNIF--------------------N 209
                 .......55666744*********************************************99......4444444444....................5 PP

                 SHHHHSHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEE...........CHHCHHHHTTSTEEEECEEBET CS
   SBP_bac_1 190 npegvtaatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkv...........afaadkekpkeelgvaplPagk 277
                 + + +ta +++ + y+    +     ++a  + ++   +++ +G  + + +++ ++ +a k+a+ +              ++ + +k+++++a +P+  
  KIR62859.1 210 TIVLQTAGNAQGYHYYDTANNLVVDSNPAVRQAWDTTMDILDSGLSGKYGSWSEEWVSAFKQAKFAtiacpawmtgvIEGNAGPAAKGKWDIAQVPGN- 307
                 55555555788888888888888888888888888888999999999998888888777777777788888888887555666666777777777633. PP

                 TTTSEEEEEEEEEEBTTCSTHHHHHHHHHHHTSHHHH CS
   SBP_bac_1 278 ggkpgilgayglaipkgsknpeaAkkFldfllspeaq 314
                    +g+ g++ la+pk+sk++++A ++ +fl+s+++q
  KIR62859.1 308 ---GGNWGGSFLAVPKQSKHQAEAIELAKFLTSAKGQ 341
                 ...33369999************************99 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   1.1   3.4e-07     0.002     132     222 ..     262     361 ..      96     374 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.4e-07
   SBP_bac_6 132 mvkaagslesgepavsvvpyffadilpekkkgk...nlkvv.wPedGalvspifmlvkkg.kkkelakafidfllspevqailakaggvfPvv....tn 221
                 +++ + + ++ + a+   p++++ ++  + + +   ++++  +P +G+     f++v+k+ k++++a +++ fl+s+++q    ka g +P++    ++
  KIR62859.1 262 SEEWVSAFKQAKFATIACPAWMTGVIEGNAGPAakgKWDIAqVPGNGGNWGGSFLAVPKQsKHQAEAIELAKFLTSAKGQIGAFKAKGPLPSNpqalDD 360
                 6677777777777777788999999988886557889988758999********************************998888888889996433333 PP

   SBP_bac_6 222 p 222
                 p
  KIR62859.1 361 P 361
                 3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3105.15
//
Query:       KIR62860.1  [L=253]
Description: hypothetical protein TK50_18120 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-22   79.7   7.0    3.4e-22   79.7   7.0    2.2  2  MDMPI_N       Mycothiol maleylpyruvate isomerase N-terminal d
    2.8e-13   50.5   9.3    2.8e-13   50.5   9.3    2.3  3  MDMPI_C       MDMPI C-terminal domain
     0.0012   19.3   0.5     0.0012   19.3   0.5    1.8  2  DinB_2        DinB superfamily
     0.0013   19.1   0.0     0.0025   18.3   0.0    1.5  1  SCP2          SCP-2 sterol transfer family
  ------ inclusion threshold ------
       0.16   12.2   0.0        0.3   11.4   0.0    1.4  1  Alkyl_sulf_C  Alkyl sulfatase C-terminal


Domain annotation for each model (and alignments):
>> MDMPI_N  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   7.0   9.4e-26   3.4e-22       5     140 ..      16     136 ..      12     137 .. 0.92
   2 ?    1.6   1.0      0.11     4e+02      71     124 ..     170     227 ..     139     237 .. 0.70

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 9.4e-26
     MDMPI_N   5 waalaalvagLtdeqwaapsp.cpGWtvadlvaHlarsaralaaalaaegaesalardaaaalvtaadaeavdlaaslapeallaafraavtrlaaala 102
                 +++  a++a+++++   +p++ cpGWt++dl+ Hl+   +++ ++++++g++++              ++   +aa+ a++  l+ +++a++rl a ++
  KIR62860.1  16 RTEGPAFAAAVAEAPPETPVLsCPGWTITDLTVHLGEVYTWVNTIVTTGGTTRP--------------ERPSVPAAPPAGTSALEFWQQAYDRLMATFD 100
                 566678999999**********************************99755544..............888999999999999**************** PP

     MDMPI_N 103 alppdaiadrlgipggprslgeflrtrlvEavvHglDl 140
                  l+p+ + +++  +++p  +g+++r++++E+ vH++D+
  KIR62860.1 101 GLDPETPTWNW--APQPKKAGFWPRRMAHETSVHRWDA 136
                 ***********..************************8 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.11
     MDMPI_N  71 d....aeavdlaaslapeallaafraavtrlaaalaalppdaiadrlgipggprslge 124
                 +       v laa++a+++   ++r+   +l++    l+ d+  +r+ + g++ +l  
  KIR62860.1 170 AtgqwHGVVHLAAPDAGQDWYLRLRGEGVALLDTDTILDHDDHHARVEVTGTASDLLL 227
                 2344477788999999999999999999999999999999999999966666666544 PP

>> MDMPI_C  MDMPI C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.2   7.8e+03      50      64 ..      15      32 ..       3      40 .. 0.52
   2 ?   -1.6   0.1       1.4   5.1e+03      23      28 ..      70      79 ..      50     106 .. 0.52
   3 !   50.5   9.3   7.7e-17   2.8e-13       2      90 ..     150     248 ..     149     249 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.2
     MDMPI_C 50 lwadg...adatvrGtaa 64
                l+++g   a+a+ +++++
  KIR62860.1 15 LRTEGpafAAAVAEAPPE 32
                334444445555555555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.4
     MDMPI_C 23 d....srvvl 28
                +    ++++ 
  KIR62860.1 70 ErpsvPAAPP 79
                1211222222 PP

  == domain 3  score: 50.5 bits;  conditional E-value: 7.7e-17
     MDMPI_C   2 laadgvdellatvvarraaapdsrvvlelegprtvhlhatdggra.rlalwadg................adatvrGtaadlllllwGRlspddtlevd 83 
                 laadgv+e+l+t +++ +      ++   +++  vhl a+d+g+   l+l+++g                a+++v+Gta+dlll+l GR+s+d+ l v 
  KIR62860.1 150 LAADGVSEVLDTWLPAGR------RKATGQWHGVVHLAAPDAGQDwYLRLRGEGvalldtdtildhddhhARVEVTGTASDLLLALMGRVSFDT-LGVR 241
                 8****************5......7889***************9996666677777999999******************************99.**** PP

     MDMPI_C  84 Gdralla 90 
                 Gdrall+
  KIR62860.1 242 GDRALLD 248
                 *****98 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.5   3.5e-07    0.0012      28     125 ..      39     133 ..      15     136 .. 0.74
   2 ?   -1.8   0.1       1.2   4.3e+03      44      56 ..     187     199 ..     170     229 .. 0.57

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.5e-07
      DinB_2  28 gkwsiawllaHlgnveelllerlr...geeaprpgldpltppsaaealaylaevrarllallealtdadldrpltaphpglgkltlgdvllfvlqHeqh 123
                 ++w+i  l+ Hlg v   +++ +    g + p+++  p++pp+   al+ +++ ++rl+a++++l++    ++ t++     +  +g++ + +++++  
  KIR62860.1  39 PGWTITDLTVHLGEVYT-WVNTIVttgGTTRPERPSVPAAPPAGTSALEFWQQAYDRLMATFDGLDP----ETPTWN-WAPQPKKAGFWPRRMAHETSV 131
                 45************654.554444465655555555556679999**********************....455555.367777788888888888777 PP

      DinB_2 124 Hl 125
                 H+
  KIR62860.1 132 HR 133
                 76 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
      DinB_2  44 elllerlrgeeap 56 
                 + + +rlrge  +
  KIR62860.1 187 QDWYLRLRGEGVA 199
                 5555555554333 PP

>> SCP2  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   6.9e-07    0.0025       5      79 ..     159     239 ..     155     251 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.9e-07
                 HHHHHHHHHHHHHCCH-EEEEEEECTC.TEEEEEETTSTEEE......SSCTTBS-SEEEEEEHHHHHHHHCTSS-HHHHH CS
        SCP2   5 lerlkdpekkealkklagvlrfdltdlkgsltldlkegqldv......aakdegkadvtlslsledllelaegklnpqkaf 79 
                 l+++  + +++a  +++gv+++   d+++ ++l+l ++++ +      +++d++ a v ++++++dll  + g++  +++ 
  KIR62860.1 159 LDTWLPAGRRKATGQWHGVVHLAAPDAGQDWYLRLRGEGVALldtdtiLDHDDHHARVEVTGTASDLLLALMGRVSFDTLG 239
                 566653478999999*********************9999999*****99999****************999996655554 PP

>> Alkyl_sulf_C  Alkyl sulfatase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.4e-05       0.3      28     110 ..     169     250 ..     166     252 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.4e-05
                   HHTT-.EEEEEEEETTTTEEEEEEEETTEEEE.....ECT---TTSSEEEEE-HHHHHHHHTTSS-HHHHHHTTTEEEEE-TCHHHHH CS
  Alkyl_sulf_C  28 kaadk.dltinlvvtDvdekyllrlsngvLth....trkaaqaddadltvtltreqLvalllgkatlgkevaagklkieGdaealakl 110
                   ka ++ + ++ l  +D ++ + lrl+   +      t+ + ++ +a + vt t ++L+ +l+g       v+ ++l + Gd++ l+ l
    KIR62860.1 169 KATGQwHGVVHLAAPDAGQDWYLRLRGEGVALldtdTILDHDDHHARVEVTGTASDLLLALMGR------VSFDTLGVRGDRALLDGL 250
                   66777688899999***********9654333357877788889*************9999866......778899999999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1815.22
//
Query:       KIR62861.1  [L=363]
Description: UDP-N-acetylenolpyruvoylglucosamine reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-33  114.9   0.0    7.4e-33  113.2   0.0    1.9  2  MurB_C         UDP-N-acetylenolpyruvoylglucosamine reductase,
    5.9e-23   81.2   2.7    1.2e-22   80.1   2.7    1.5  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> MurB_C  UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.48   4.3e+03      84     109 ..     137     163 ..     132     165 .. 0.66
   2 !  113.2   0.0   8.3e-37   7.4e-33       3     120 .]     227     359 ..     225     359 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.48
                 EESSS--HHHHHHHHHHHH..HHHHHHH CS
      MurB_C  84 vNgggataadilalarevr..kkVkekf 109
                  N  ga ++++++ +  v+  ++V+e+ 
  KIR62861.1 137 QNV-GAYGQEVAETITGVQvyDRVQESL 163
                 564.788888888887655336676665 PP

  == domain 2  score: 113.2 bits;  conditional E-value: 8.3e-37
                 HHHHHHHHHHHSHCHSTT..CTCEESESB---EESHHHHHHHH..........EEEETTSSEEE-HHHHHHHTT-T.TSEE.TTEEEESSSTTEEEE.S CS
      MurB_C   3 reavlelrakklmvkqpl..dtpsaGSfFknPivegeeaeelk..........eyeaeegevklsagwLIeqaglk.Glrv.ggaqvsekhalflvN.g 86 
                 r+avl+lra+k+mv++ +  dt+s+GSfF+nP+++ge++e l+          +++ + ++vk+sa+wLI++ag+  G+   +g+++s+kh+l+l+N  
  KIR62861.1 227 RAAVLRLRAGKGMVLDAAdpDTRSVGSFFTNPVLDGEAYELLRgraadlgeppHWPGAGDTVKVSAAWLIDKAGFAkGHPGpEGVAISSKHTLALTNrS 325
                 799*************996677**************9999888**********9*********************98887679**************76 PP

                 SS--HHHHHHHHHHHHHHHHHHHS----BSSEEE CS
      MurB_C  87 ggataadilalarevrkkVkekfgveLepEvvli 120
                 g+a++a ++alar +r++V+++fgv L+pE+vl+
  KIR62861.1 326 GTASTAALIALARDIRDGVHARFGVPLHPEPVLV 359
                 6******************************986 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   2.7   1.3e-26   1.2e-22       6     130 ..      37     157 ..      32     163 .. 0.91

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 1.3e-26
                    EESSHHHHHHHHHHHHHCTSCEEEESSSTTEE.STTCSCCEEEEEETT.S--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCGSB CS
  FAD_binding_4   6 rpeseeevaaalrlaneaglpvlvrGgGssll.gqavatggvvldlsr.lnrileideeegtatveaGvtlgdlvealaakglllglepgsgipgt 99 
                    +++s+ee++  ++ a+ ++  vl+++gGs+++ g+a+  g+vvl  sr l+ ++  d+++ t++veaG++++dlv+a+  ++++ gle++sgipg+
     KIR62861.1  37 TAASAEEIVQKVQQARLRDDEVLILAGGSNVVvGDAGFPGTVVLVRSRgLR-VVAEDADTVTVRVEAGEPWDDLVAAT-VANGWSGLECLSGIPGS 130
                    6899********************************955666666677455.6899999*******************.9**************** PP

                    HHHTTTTT-EETTEEGG--HHGTEEEEEEEE CS
  FAD_binding_4 100 vGGaiatnagGygsekyGlirdnvlglevvl 130
                    +G+++++n+g+yg e++    ++++g++v +
     KIR62861.1 131 AGATPIQNVGAYGQEVA----ETITGVQVYD 157
                    *****************....******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2670.14
//
Query:       KIR62862.1  [L=454]
Description: D-inositol 3-phosphate glycosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-36  124.1   0.0    7.1e-36  123.3   0.0    1.3  1  Glycos_transf_1  Glycosyl transferases group 1
    6.1e-34  117.5   1.1    6.1e-34  117.5   1.1    2.4  3  Glyco_transf_4   Glycosyltransferase Family 4
      1e-27   97.5   7.8      1e-27   97.5   7.8    3.2  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    1.8e-27   96.4   0.1    3.6e-27   95.4   0.1    1.5  1  Glyco_trans_1_4  Glycosyl transferases group 1
    2.7e-09   37.3   0.0    6.4e-09   36.1   0.0    1.6  1  Glyco_trans_1_2  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.018   15.0   0.0       0.14   12.2   0.0    2.1  1  Glyco_trans_4_2  Glycosyl transferase 4-like
      0.031   14.0   0.3       0.18   11.5   0.2    2.0  2  Glyco_transf_5   Starch synthase catalytic domain


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.0   2.8e-39   7.1e-36       6     171 ..     238     411 ..     235     412 .. 0.96

  Alignments for each domain:
  == domain 1  score: 123.3 bits;  conditional E-value: 2.8e-39
                      HHHTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCC...HCSCEEEEEES......STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHH CS
  Glycos_transf_1   6 rkklgknekkkiilsvgrlekeKgvdllikafallkkq...lnpnvklviaG.....ngeeekelkklaeelelsdnviflgevsredleellk 91 
                      r++lg++++ +++ +vgr+++ K +d+li+a+a l+++   l +++ +vi+G     + ++   l +la++l++ d+v+fl     +dl+++++
       KIR62862.1 238 RRRLGLPTTGYVVAFVGRIQPLKAPDVLIRAAAALRERdplLADELTVVIVGgpsgsGLDRPTALIELAASLGIADRVRFLPPCTGDDLPAVYR 331
                      67889999**********************************************9887788889****************************** PP

                      CESEEEEEESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHHH CS
  Glycos_transf_1  92 nadifvlpsisEgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenark 171
                      +ad++++ps++E+fG+v+lEA a+g+pv+a ++gg+   v+d ++G+lv+++++ ++a+ ++ ll d+ +r+ lg+ a++
       KIR62862.1 332 AADLVAVPSHNESFGLVALEAQACGTPVLAAAVGGLVTAVRDQVSGVLVDSHDPVDWARTLAGLLPDRARRATLGRGAEQ 411
                      ***********************************************************************999998875 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.5   1.1   2.4e-37   6.1e-34       1     170 []      41     222 ..      41     222 .. 0.92
   2 ?   -1.9   0.0       1.1   2.8e+03      86     100 ..     232     246 ..     228     249 .. 0.83
   3 ?   -2.4   0.0       1.6   4.2e+03     129     142 ..     328     341 ..     304     349 .. 0.78

  Alignments for each domain:
  == domain 1  score: 117.5 bits;  conditional E-value: 2.4e-37
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeev........elvvrvprvplpllkrllrslaflrrlrrllkre...kpDvvHahspaal 84 
                     +GG+++++le+ar+La++ +eV+++t++++g+l+  v        ++v+++p   l + + +++  af   + r   +    ++D++H+h++ ++
      KIR62862.1  41 AGGMNVYILEVARRLAEADVEVEIFTRATSGDLPPVVemspgvhvRHVTAGPLEGLTKEELPGQLCAFTAGVLRTEAARppgHYDLIHSHYWLSG 135
                     59****************************************8888888888888888888999988887766555555699************9 PP

  Glyco_transf_4  85 gaallalrrrlgiplVltvHglye..krllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDler 170
                      +++la  r +g+plV+t+H+l+   + +l a  +p+ +++   e++++  adr++a+++ +a++l++ry+ +p+++tV+ +GvDl+r
      KIR62862.1 136 QVGWLAKER-WGVPLVHTAHTLAKvkNDRLAAGDRPEPKARVIGEEQVVAEADRLVANTRVEARDLLDRYDADPARVTVVEPGVDLDR 222
                     999888776.****************99999999****************************************************98 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
  Glyco_transf_4  86 aallalrrrlgiplV 100
                     aa+la+rrrlg+p+ 
      KIR62862.1 232 AAMLAARRRLGLPTT 246
                     689999999**9985 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.6
  Glyco_transf_4 129 rllrradrviavSe 142
                      ++r+ad v ++S+
      KIR62862.1 328 AVYRAADLVAVPSH 341
                     56888888888887 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   7.8     4e-31     1e-27       1     160 []      42     217 ..      42     217 .. 0.86
   2 ?   -3.1   7.9       3.8   9.7e+03      26     102 ..     269     362 ..     219     416 .. 0.47

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 4e-31
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgape..leedgvrvhrlpvprrpsplad......laalralrrll.rqrrerpdvvhahsptag 85 
                      gG+++y+ e+ar+La++ +eV+++t+a  ++ p+  ++ +gv+v+++ +++ +++++        a+++++ r+  ++   ++d++h+h++++g
       KIR62862.1  42 GGMNVYILEVARRLAEADVEVEIFTRATSGDLPPvvEMSPGVHVRHVTAGPLEGLTKEelpgqlCAFTAGVLRTEaARPPGHYDLIHSHYWLSG 135
                      8********************************9555589********9999863332333333788888888876668899************ PP

  Glyco_trans_4_4  86 laarlarrrrgiplvvtlh......glllrrgsgavrrlyralerrllrradavlvvseaeaeelra.lgvpadrvvvvpng 160
                      ++++la+ r+g+plv+t+h      ++ l+ g ++++ ++   e  +++ ad+++++++ ea++l + + ++++rv+vv +g
       KIR62862.1 136 QVGWLAKERWGVPLVHTAHtlakvkNDRLAAGDRPEPKARVIGEEQVVAEADRLVANTRVEARDLLDrYDADPARVTVVEPG 217
                      *******99**********544444344777899999999899**********************99788*********876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.8
  Glyco_trans_4_4  26 papapgapeleedgvrvhrlpvprrpspladlaalralrrll....rqr.............rerpdvvh..ahsptaglaarlarrrrgiplv 100
                      +a+ +++++l +d ++v+ +  p ++ +l ++ al  l++ l    r+r              +  d+v   +h+   gl+a+ a+ + g+p++
       KIR62862.1 269 AAALRERDPLLADELTVVIVGGPSGS-GLDRPTALIELAASLgiadRVRflppctgddlpavYRAADLVAvpSHNESFGLVALEAQ-ACGTPVL 360
                      22223344455555555444444333.34444443333222211111112222222222222222333330133333444444444.5555554 PP

  Glyco_trans_4_4 101 vt 102
                        
       KIR62862.1 361 AA 362
                      44 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.1   1.4e-30   3.6e-27       3     133 ..     249     397 ..     247     398 .. 0.88

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 1.4e-30
                      EEEEES---GG.GTHHHHHHHHHHHH.HH......EEEEEES---........HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE-- CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkkd......vrlvivGdgp.rp.....eeleelaa..gleerveftGfv..edlaellaaadvfvaPs 80 
                      v+ fvGr+ ++ k+ d+l++a+++lr++d      +++vivG gp  +      +l elaa  g+++rv+f+     +dl+++++aad++ +Ps
       KIR62862.1 249 VVAFVGRI-QPLKAPDVLIRAAAALRERDplladeLTVVIVG-GPsGSgldrpTALIELAAslGIADRVRFLPPCtgDDLPAVYRAADLVAVPS 340
                      789*****.789**************8845677789******.543223434466666665699***********9999*************** PP

                      ..---SHHHHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHHH CS
  Glyco_trans_1_4  81 ..egfglkllEamaaglpvVatdvggiaevv..gengllvppgdpealaeailrLle 133
                        e+fgl++lEa a+g+pv a +vgg+  +v  +++g+lv+++dp ++a+ ++ Ll 
       KIR62862.1 341 hnESFGLVALEAQACGTPVLAAAVGGLVTAVrdQVSGVLVDSHDPVDWARTLAGLLP 397
                      *99***********************988888889*****************99985 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   2.5e-12   6.4e-09       4      91 ..     338     426 ..     335     427 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2.5e-12
  Glyco_trans_1_2   4 npsrsespnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydhraeqll 91 
                       ps++es+ l+ +Ea acG+++l+ +  gl   ++++ +++l++  d+ ++a+ ++ ll ++++r+ +++ a ++  +++++d+ + +ll
       KIR62862.1 338 VPSHNESFGLVALEAQACGTPVLAAAVGGLVTAVRDQVSGVLVDshDPVDWARTLAGLLPDRARRATLGRGAEQH-ARNFSWDRTVGNLL 426
                      499**********************99***************************************999888888.89*****9998877 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.5e-05      0.14      10     110 ..      45     157 ..      39     170 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.5e-05
  Glyco_trans_4_2  10 svhtlrlakeLakrgyeVhvitp.kkga..kdeleaegihvhrlkvd.....rkg..pleylk.afklkklikki...kPDvvhahyakpygll 89 
                      +v+ l++a+ La++++eV+++t+ + g     ++ ++g+hv  ++ +     +k   p ++ +  + + +  +++    +D++h hy  + g +
       KIR62862.1  45 NVYILEVARRLAEADVEVEIFTRaTSGDlpPVVEMSPGVHVRHVTAGpleglTKEelPGQLCAfTAGVLRTEAARppgHYDLIHSHYWLS-GQV 137
                      578899999************99644445566778999999999666644442222233333322222222222222268*******777.789 PP

  Glyco_trans_4_2  90 gslaarlsgvipvvlsvwGld 110
                      g la+ + g +p+v +++ l 
       KIR62862.1 138 GWLAKERWG-VPLVHTAHTLA 157
                      99*999**9.9***9999765 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.26   6.6e+02      15      44 ..      41      71 ..      36      94 .. 0.85
   2 ?   11.5   0.2   7.1e-05      0.18     125     173 ..     117     157 ..      97     166 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.26
  Glyco_transf_5 15 tGGLadvvgaLpkaLaklghdvrvilPry.g 44
                    +GG+   + + ++ La++ ++v++++ +  g
      KIR62862.1 41 AGGMNVYILEVARRLAEADVEVEIFTRATsG 71
                    6999999999**************9987744 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.1e-05
  Glyco_transf_5 125 lleklgwkpdvihahDWhtalvpallkelykerglfkkiktvftiHNla 173
                     +++  +   d+ih h W ++ v+ l+ke          +++v+t H la
      KIR62862.1 117 AARP-PGHYDLIHSHYWLSGQVGWLAKERW-------GVPLVHTAHTLA 157
                     3333.4569*******************95.......3********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3019.08
//
Query:       KIR62863.1  [L=177]
Description: hypothetical protein TK50_18145 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-24   85.9   0.3    2.9e-24   85.5   0.3    1.1  1  YbjN      Putative bacterial sensory transduction regulator
    0.00064   19.8   0.0      0.001   19.2   0.0    1.2  1  CesT      Tir chaperone protein (CesT) family


Domain annotation for each model (and alignments):
>> YbjN  Putative bacterial sensory transduction regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.3   3.2e-28   2.9e-24       3     126 ..       9     129 ..       8     130 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 3.2e-28
                 HHHHHHHHHH--S-EEEEETTEE.EEEEEETTEEEEEEE--SSTT-EEEEEEEEES--TTHHHHHHHHHHHTTTTTTT-EEEEETTEEEEEEEEE-.TT CS
        YbjN   3 dlleevLeeagleyertedddgaivvvgtwggyrftiallgeseelllvlafvarvpeedreallellnrwNrellfgkayldedgdvlvehdldldag 101
                 +l+e v++e++l++e t++   a  v++++  +++ti+ l  +e+ l+++afv+r p+e+re+l ++l+++N++++ +++++d  gdv+++++++l ag
  KIR62863.1   9 ALIESVCAERELAVESTGEASYA--VTLPGTHKLKTICNLVVGEHALRIEAFVMRQPDERREELWAWLLQRNARMYAVSFSIDAVGDVYLTGRVNL-AG 104
                 689********************..***********************************************************************.** PP

                 --HHHHHHHHHHHHHHHHHHHHHHH CS
        YbjN 102 ltpeqldrllalvleaadqffdalq 126
                 ++ ++ldrll+ vl+ ad+ fd++ 
  KIR62863.1 105 VDEDELDRLLGSVLTYADESFDTML 129
                 **********************987 PP

>> CesT  Tir chaperone protein (CesT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.1e-07     0.001      42     115 ..      52     121 ..      39     123 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.1e-07
                 EEEEEEEEEEGGGCCTTEHHHHHHHHHCHHSCTTT-EEEEETTTTEEEEEEEEEGCC--HHHHHHHHHHHHHHH CS
        CesT  42 eLllsaplgrlppdedgallerlLeaNllgartaggalgldeesglllLwarlelesldeeaLeallealvala 115
                 +L ++a++ r+p++++++l + lL+ N   ar++   +++d + g+++L  r++l+++de++L +ll +++ +a
  KIR62863.1  52 ALRIEAFVMRQPDERREELWAWLLQRN---ARMYAVSFSID-AVGDVYLTGRVNLAGVDEDELDRLLGSVLTYA 121
                 567889999999999999*********...8**********.************************99888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1330.75
//
Query:       KIR62864.1  [L=293]
Description: hypothetical protein TK50_18150 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.71    9.6   2.0          2    8.2   0.0    2.3  2  HeH              HeH/LEM domain
        1.1   10.3  17.5        1.8    9.6  17.5    1.4  1  Rib_recp_KP_reg  Ribosome receptor lysine/proline rich region


Domain annotation for each model (and alignments):
>> HeH  HeH/LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00022         2       4      33 ..      38      67 ..      36      69 .. 0.93
   2 ?   -0.3   0.7     0.097   8.7e+02      21      27 ..     135     141 ..     134     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00022
         HeH  4 LtVaqLRriLvehgveyPsnaKKadLveLf 33
                ++V ++R  L   gv   s  +K++Lv+ +
  KIR62864.1 38 MRVDDIRGQLRRRGVAGISVLRKPELVKAL 67
                8**************************965 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.097
         HeH  21 PsnaKKa 27 
                 Ps+a+Ka
  KIR62864.1 135 PSPARKA 141
                 9*****9 PP

>> Rib_recp_KP_reg  Ribosome receptor lysine/proline rich region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  17.5    0.0002       1.8      93     148 ..     106     160 ..      78     170 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0002
  Rib_recp_KP_reg  93 keeevkakaakaapapvlaqksapaeaksapspkdkkkkekkvakvepapakaava 148
                      ++++ +++ aka+pap+ a k+ap  ak+apsp+ k+++++++a  + ++ kaa+a
       KIR62864.1 106 ARTKATPARAKASPAPTRA-KAAPGRAKAAPSPARKAAPASASARRAAPARKAAPA 160
                      3456666777888888876.999*****************9999866655545544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2207.42
//
Query:       KIR62865.1  [L=428]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-38  132.9  45.8    5.7e-25   88.0  25.3    2.0  2  MFS_1       Major Facilitator Superfamily
    2.3e-15   56.4  21.0    1.1e-09   37.7   5.3    2.1  2  Sugar_tr    Sugar (and other) transporter
    5.8e-07   28.7  12.3    5.6e-06   25.5  11.3    2.0  1  MFS_1_like  MFS_1 like family
    5.1e-05   21.9  37.6    0.00038   19.0  37.6    1.9  1  MFS_3       Transmembrane secretion effector
     0.0082   15.0   4.3      0.045   12.6   0.6    2.7  3  PTR2        POT family
  ------ inclusion threshold ------
       0.58   10.6   4.5       0.58   10.6   1.9    2.4  2  Romo1       Reactive mitochondrial oxygen species modulator 1
          6    5.0   7.1        1.4    7.1   0.2    2.6  3  OATP        Organic Anion Transporter Polypeptide (OATP) fami


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0  25.3   2.2e-28   5.7e-25       1     232 [.      22     246 ..      22     249 .. 0.84
   2 !   51.8  14.5   2.3e-17   5.9e-14      17     182 ..     242     406 ..     240     426 .. 0.81

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 2.2e-28
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l+ +++++ l++++l +++  +l+++ g+++ ++gl+l+l ++g av++ ++G l+dr+Grr++ll++ l+ a+++l l fa++lw+++ + +l Gl+a
  KIR62865.1  22 LWTGTLINRLGSFVLVFLAI-YLTQERGFDELAAGLVLGLWGVGGAVGTTLGGTLADRWGRRPTLLTAHLGAAAMMLTLGFAQQLWAVAGGALLLGLFA 119
                 5789999*******999999.*************************************************999996666689***************** PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                  a+ pa +a++ d++p+++r ra++l + +++lG++++++l+gl a  +++ ++f+i a+ +l  +v+  +++ + +++ +   ++      + +p   
  KIR62865.1 120 EAARPAFGAMMIDVVPERDRLRAFSLNYWAINLGFACAAILAGLAA-EASYLLLFVIDAATTLATAVI--IFVKVAETRAPARVTVHP--AGAARPRG- 212
                 *******************************************999.779***************995..344333333333333333..11344444. PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllpl 232
                 a++ +l d+v + +++  ll++++f +  ++lp+
  KIR62865.1 213 ALRTILGDRVYLGFVALNLLGALVFLQHISMLPI 246
                 599******9985666656666677777777776 PP

  == domain 2  score: 51.8 bits;  conditional E-value: 2.3e-17
       MFS_1  17 palplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfp 115
                 ++lp+a+++d g+sps++g +++l +++ ++++l++ rl+   +r  vl l+++++++g+ l +fa   w+ ++  ++  lg+ +  p+  +lia+++p
  KIR62865.1 242 SMLPIAMGDD-GLSPSTYGVVIALNGVLIVAGQLFVPRLIRGRSRSHVLALAAVVMGVGFGLTAFADAAWFYALTVLVWTLGEMLNSPSNSTLIAELSP 339
                 6899899999.****************************98765555************44444875556677777788999999************** PP

       MFS_1 116 keergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrk 182
                  + rgr+ g++s++++++ + +p+lggl+ +++g  a+++ +a+v+++++v  l+  p+++++    
  KIR62865.1 340 ADLRGRYQGVFSLSWQVAGASAPILGGLVRQQAGNAALWLGCAAVGVVVAVAHLASGPARERRATAL 406
                 *************************************************995333333333333322 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   5.3   4.2e-13   1.1e-09     251     441 ..      14     195 ..       3     198 .. 0.82
   2 !   24.6   7.7     4e-09     1e-05      45     185 ..     255     393 ..     228     398 .. 0.92

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 4.2e-13
                 ...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHH...HHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS. CS
    Sugar_tr 251 vrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvv...nfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaksk 346
                  + r++  + +  + +  G +++ +++ +++++ g+++  ++ +++g +    +v t  +  l dr+GRR++ll+  +g+a++++ lg       a+  
  KIR62865.1  14 GLPRTFWYLWTGTLINRLGSFVLVFLAIYLTQERGFDEL-AAGLVLGLWgvgGAVGTTLGGTLADRWGRRPTLLTAHLGAAAMMLTLG------FAQ-- 103
                 667777777778888889999999999999999999999.555555555111567777788999999999999999999999999998......222.. PP

                 ..CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--ST CS
    Sugar_tr 347 aasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetk 441
                   +  a+++ al + lfa    p +  ++ ++ p++ R  a ++ + + +l     ++l   ++ea+     f++ a+  +++++++f++v et 
  KIR62865.1 104 --QLWAVAGGALLLGLFAEAARPAFGAMMIDVVPERDRLRAFSLNYWAINLGFACAAILAGLAAEASY-LLLFVIDAATTLATAVIIFVKVAETR 195
                 ..456788999999999999999999999999999999999999999999999999999999999999.99999999999999999999999995 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 4e-09
                 ..HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHH CS
    Sugar_tr  45 svlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsly 143
                  +++g++ ++  v  ++G+lf+  l+   +R  +l+ aav++ +g  l+a+a+   + + +++  ++  +g  l s   +++i+E++p++lRg+  +++
  KIR62865.1 255 PSTYGVVIALNGVLIVAGQLFVPRLIRGRSRSHVLALAAVVMGVGFGLTAFAD---AAWFYALTVLVWTLGEMLNSPSNSTLIAELSPADLRGRYQGVF 350
                 5677888888889999*************************************...8899999999999999*************************** PP

                 HHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHH CS
    Sugar_tr 144 qlaitfGilvaaifglgl.nktsnadgwrillglqlvpallll 185
                  l++++    a i+g  + ++ +na  w    ++ +v a++ l
  KIR62865.1 351 SLSWQVAGASAPILGGLVrQQAGNAALWLGCAAVGVVVAVAHL 393
                 **************9999899999*************999866 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5  11.3   2.2e-09   5.6e-06      21     382 ..      38     377 ..      31     379 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 2.2e-09
  MFS_1_like  21 Yltiylk.skglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfippskerqeesklevsvaqdvdaektfwilfllv 118
                 +l iyl+ ++g++    g+++ +  +   ++  + g+laDr g+r +++ + l ++a+++  l                        + +++w+++   
  KIR62865.1  38 FLAIYLTqERGFDELAAGLVLGLWGVGGAVGTTLGGTLADRWGRRPTLLTAHLGAAAMMLT-LG-----------------------FAQQLWAVAGGA 112
                 99****9689*************************************99999888877776.55.......................789********* PP

  MFS_1_like 119 vlasfflaailvlldaatlkel.gedrkd..yGrqrlfGsvGyaifafitGilidhysvnllpysallyvlaallvisllvvlilnetekesklkvtks 214
                 +l  +f +a+ + + a+++  + + + +   ++       +G+a +a++ G++ + ++  l       +v++a  +++++v++ ++  e      vt  
  KIR62865.1 113 LLLGLFAEAARPAFGAMMIDVVpE-RDRLraFSLNYWAINLGFACAAILAGLAAEASYLLL-------FVIDAATTLATAVIIFVKVAETRAPARVTVH 203
                 **********************63.4443258876655689****************9944.......4444444444444444444444444444433 PP

  MFS_1_like 215 l.......qvllnilknpeviifllvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfll 306
                 +        +l  il ++ +++f++  l+   ++    + l + + + g s ++ G+++al  v+ +   +f  +l++  + + +l +a +++ + f l
  KIR62865.1 204 PagaarprGALRTILGDRVYLGFVALNLLGALVFLQHISMLPIAMGDDGLSPSTYGVVIALNGVLIVAGQLFVPRLIRGRSRSHVLALAAVVMGVGFGL 302
                 3555555588999999999999999999999999999999*********************************************************** PP

  MFS_1_like 307 yaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaifl 382
                  a+ + aw+  ++ +   +   l   +  + ++++ p  l++++qg++s l++ + +a+  ++GGl+ ++ + + l
  KIR62865.1 303 TAFADAAWFYALTVLVWTLGEMLNSPSNSTLIAELSPADLRGRYQGVFS-LSWQVAGASAPILGGLVRQQAGNAAL 377
                 *********999988888888888889999******************8.5699999999******9988877665 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0  37.6   1.5e-07   0.00038      11     404 ..      18     407 ..      17     418 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.5e-07
       MFS_3  11 vFrviWiaslvsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllal 109
                 +F  +W+ +l+  lG+++    a +l  +    +l+  lv     +   + + l G laD + rR  ll+++l   +++++lt+  a   ++ w++ + 
  KIR62865.1  18 TFWYLWTGTLINRLGSFVLVFLAIYLTQERGFDELAAGLVLGLWGVGGAVGTTLGGTLADRWGRRPTLLTAHL--GAAAMMLTLGFA---QQLWAVAGG 111
                 688899999999999999988888888888888888888888888888888899***************9986..456677766554...4569999** PP

       MFS_3 110 tlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsylalival.lrwkrevrksslprEklleal 207
                 +ll+g+ a    Pa+ A++ ++v+ rd   A  Ln   in+  +    l+G+  a +  +l f ++a + la  v++ +++  +  + ++   +  +a 
  KIR62865.1 112 ALLLGLFAEAARPAFGAMMIDVVPERDRLRAFSLNYWAINLGFACAAILAGL-AAEASYLLLFVIDAATTLATAVIIfVKVAETRAPARVTVHPAGAAR 209
                 *********************************************9999996.6788899999999999887544431444444445555566666665 PP

       MFS_3 208 raglRftaasreikavlvRaalFg.lsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalas 305
                   g+  t +   +   +v   l g l     +++LP+   d  +  +++yG++++  Gv  ++g l+++rL +  s +++++laav++ +    +a+a+
  KIR62865.1 210 PRGALRTILGDRVYLGFVALNLLGaLVFLQHISMLPIAMGD-DGLSPSTYGVVIALNGVLIVAGQLFVPRLIRGRSRSHVLALAAVVMGVGFGLTAFAD 307
                 5554445555555544444333331444567889**86655.57789**************************************************** PP

       MFS_3 306 slwvavlvlllgGaaWitalstlnvavqlavPrWvvgRalavYltvlaGglaaGsllWGavaeals.vtlaLlaaaaalllaaaillllklpeleasdl 403
                  +w  +l++l+   + ++   +  + +  ++P+ ++gR   v+    + + a   +l G v ++++ ++l L +aa+++++a+a l   + +e++a++l
  KIR62865.1 308 AAWFYALTVLVWTLGEMLNSPSNSTLIAELSPADLRGRYQGVFSLSWQVAGASAPILGGLVRQQAGnAALWLGCAAVGVVVAVAHLASGPARERRATAL 406
                 ****99999998888888888888888999***************999999999999999998876145556666666666666666666666666555 PP

       MFS_3 404 a 404
                  
  KIR62865.1 407 R 407
                 5 PP

>> PTR2  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.6   1.8e-05     0.045      59     123 ..     125     189 ..     121     192 .. 0.83
   2 ?   -1.4   0.1      0.32   8.2e+02       7      51 ..     259     299 ..     257     307 .. 0.74
   3 ?    2.5   0.0      0.02        51     325     385 ..     310     370 ..     303     379 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.8e-05
                 HHHCTTT-SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH.HHHHHHHHHHHHH CS
        PTR2  59 afgadqfeekdprersrfFsiFyfsiNvGSLlsliitpylqenvgyplgFgi.pavlmiiallvFl 123
                 afga   +   +r r r Fs+ y++iN+G   + i ++ l+ +++y l F i +a  ++ a+++F+
  KIR62865.1 125 AFGAMMIDVVPERDRLRAFSLNYWAINLGFACAAI-LAGLAAEASYLLLFVIdAATTLATAVIIFV 189
                 78888888889999999************775555.556777899******966778999999996 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHCCCCT.TTTSS--S--TCHHHHHHHHHHHHHHHHH CS
        PTR2   7 gsiiyaiGhvvlalsa.ipslksaesagvrvallfigLalIalGtG 51 
                 g +i + G++++a +  +p l + +s      + +++La +++G+G
  KIR62865.1 259 GVVIALNGVLIVAGQLfVPRLIRGRS-----RSHVLALAAVVMGVG 299
                 66777788888888888889888644.....447788888887777 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.02
                 CCCHHHHHHHHHHHHHCCCHHHHHHCTSS-TTTCCCCHHHHHHHHHHHHHHHHHHHHHHHC CS
        PTR2 325 lwlipqylligiselfasiggleffykeapksmkslitglflltnalgnflssvlatlvak 385
                 ++ +++ l+ +++e+++s+++ + +++++p+ +++ + g+f l+ +++ + + +l  lv +
  KIR62865.1 310 WFYALTVLVWTLGEMLNSPSNSTLIAELSPADLRGRYQGVFSLSWQVAGASAPILGGLVRQ 370
                 677788889999************************9999988888877777777666666 PP

>> Romo1  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.9   0.00023      0.58       3      49 ..      49      96 ..      47     103 .. 0.87
   2 ?   -2.3   0.0       2.3   5.8e+03      48      55 ..     294     301 ..     277     304 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00023
       Romo1  3 ldkikmGalmGa.aVGlaiGllfGtfsalryglrgrgllrtlgksmlg 49
                +d++ +G+++G   VG+a+G+ +G++ a r g r++ l  +lg  ++ 
  KIR62865.1 49 FDELAAGLVLGLwGVGGAVGTTLGGTLADRWGRRPTLLTAHLGAAAMM 96
                789999*****746*************************999987765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.3
       Romo1  48 lgsaatFG 55 
                 + +++ FG
  KIR62865.1 294 VVMGVGFG 301
                 33333333 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.2   0.00055       1.4     313     379 ..      35     100 ..      17     110 .. 0.80
   2 ?   -2.7   0.0      0.51   1.3e+03     484     521 ..     129     165 ..     111     168 .. 0.78
   3 ?    0.7   0.8     0.048   1.2e+02      33      85 ..     253     305 ..     252     317 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00055
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 313 fitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakklaklvlvvsllslll 379
                 + +Fl  yl ++ +  +  A l++G+  + g+a+G+ lgG l  ++  ++  l +    ++++ +l+
  KIR62865.1  35 VLVFLAIYLTQERGFDELAAGLVLGLWGV-GGAVGTTLGGTLADRWGRRPTLLTAHLGAAAMMLTLG 100
                 679***********************998.6678**********99988877766666666555555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.51
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 484 vilRcVkkedksfalGlqlllirllgliPgPiifGaii 521
                 +++ +V+++d+  a +l +  i+l g+  + i+ G + 
  KIR62865.1 129 MMIDVVPERDRLRAFSLNYWAINL-GFACAAILAGLAA 165
                 445689999999999999999998.9999999998765 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.048
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  33 lpsstsgliassneignillilfvsYfggrghrPrwigigallmalgslllal 85 
                 l+ st g++ ++n +  ++  lfv  +   + r  +++++a++m++g  l+a+
  KIR62865.1 253 LSPSTYGVVIALNGVLIVAGQLFVPRLIRGRSRSHVLALAAVVMGVGFGLTAF 305
                 677899999999999999999999999999*****************988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 2810.34
//
Query:       KIR62866.1  [L=255]
Description: phosphoglycerate mutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-32  111.2   1.4    1.8e-25   89.8   1.2    2.1  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   1.2     1e-29   1.8e-25       1     115 [.      12     131 ..      12     143 .. 0.92
   2 !   19.8   0.0   2.8e-08   0.00051     111     172 ..     152     215 ..     139     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 1e-29
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTT..S---EEEE-SSHHHHHHHHHHHHCTT...--EEE-GGGS----GGGTT-B.HHHH CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlag..epidaiysSplkRarqTaeliaealg...lpveldegLrEidfGdweglttaeia 94 
                 l+L+RHGe++wna++ + g+ dv+Lt++G+++A++ +e l++    +d++ +S ++Ra++Tael+++a +   + v+   +L+E+++G+++g+++++  
  KIR62866.1  12 LVLLRHGESDWNAKNLFTGWVDVDLTAKGEAEARRGGELLREhdLLPDVVHTSVMRRAIRTAELALNAADrhwIAVRRSWRLNERHYGALQGKNKKQTL 110
                 79****************************************44556778*****************999999************************** PP

                 HH..HSHHHHHHHHH-GGG-B CS
  His_Phos_1  95 eeypeeleawlrdpadvrppg 115
                 +ey ee    +r+++d +pp+
  KIR62866.1 111 DEYGEEQFMLWRRSYDTPPPP 131
                 **************9998887 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 2.8e-08
                 GGG-BS-BHHHHHHHHHHHHH.HHH.HHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB--- CS
  His_Phos_1 111 vrppggEsledvaaRvaaale.ela.arhegetvlvVsHggvirallarllglpleelrrleld 172
                 + +p+ E+l+dv++R+ + +   ++ +  +g+tvlv +Hg  +ral+++l +++ e++ +l+++
  KIR62866.1 152 ELMPRTECLKDVVERMLPYWYdSIVpDILAGRTVLVAAHGNSLRALVKHLDQISDEAIAKLNIP 215
                 567889***********9876455514556667*********************9999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1835.21
//
Query:       KIR62867.1  [L=436]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-26   92.6   0.1    3.6e-26   91.9   0.1    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    8.2e-15   54.6   0.8    1.5e-14   53.7   0.8    1.5  1  HisKA        His Kinase A (phospho-acceptor) domain
    3.6e-06   26.8   0.1    7.6e-06   25.8   0.1    1.5  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
    0.00067   19.6   0.1     0.0017   18.3   0.1    1.8  1  HATPase_c_2  Histidine kinase-like ATPase domain
     0.0011   18.8   0.0      0.002   18.0   0.0    1.3  1  HATPase_c_5  GHKL domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.1     1e-29   3.6e-26       4     110 ..     301     408 ..     298     410 .. 0.94

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 1e-29
                 HHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTE CS
   HATPase_c   4 krLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesepgrG 101
                  +L  ++ nlv+N + +++++++++v+ +++ ++++isv D GiGi + d++++fe+f++ d++++r +ggtGlGl+ivk +++ +gG+++v+s+ g+G
  KIR62867.1 301 AQLATAVANLVENGITYSGEDTTVRVTTRSDGEHVTISVADQGIGIAPTDVERIFERFYRaDQARSRATGGTGLGLAIVKHIASNHGGRVEVSSTLGGG 399
                 578899***********8899999999996669***************************99999999*************9999************** PP

                 EEEEEEEES CS
   HATPase_c 102 ttftftlpl 110
                 +tft++lp 
  KIR62867.1 400 STFTLRLPA 408
                 *******97 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.8   4.3e-18   1.5e-14       2      66 ..     177     252 ..     176     253 .. 0.87

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 4.3e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..........T-HSSCHH...HHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkre........gklteelke...yletiesearrldhlvedlLdlsriea 66 
                 +++f+a+v+HEL+tP+ a+++ aeaL +         ++l+e+l +   + e+i+ e+ rl +lv++lL+l+r+++
  KIR62867.1 177 RRDFVANVSHELKTPIGALQLLAEALLDAtepagaaaPDLSEDLVAarrFAERIQHESTRLGRLVQELLELTRLQG 252
                 689***********************998899*8888444444444666************************986 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   2.1e-09   7.6e-06       4      82 ..     304     379 ..     301     405 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2.1e-09
  HATPase_c_3   4 ekAlaelvdNsld..AdaenvkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakrkstslGkkGiGlklAsl 82 
                   +A+a lv+N+++  ++ ++v ++   + g++ +i++ D G G+ + ++++ + r+ + ++     s+ +G  G+G  lA++
   KIR62867.1 304 ATAVANLVENGITysGEDTTVRVTTRSD-GEHVTISVADQGIGIAPTDVERIFeRFYRADQA---RSRATGGTGLG--LAIV 379
                  68*********98446666666666664.789*******************99456666666...58889999999..5554 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   4.7e-07    0.0017      39     110 ..     306     384 ..     267     405 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.7e-07
  HATPase_c_2  39 actNavehayleap.egpvevrlesdeealtvevaDsGpgfdpetlpdpteeep......keslkegGrGlalikglvD 110
                  a++N ve +      + +v+v+ +sd+e +t++vaD+G g  p++ ++  e  +      +      G+Gla++k+++ 
   KIR62867.1 306 AVANLVENGITYSGeDTTVRVTTRSDGEHVTISVADQGIGIAPTDVERIFERFYradqarSRATGGTGLGLAIVKHIAS 384
                  455555555443333789*********************9888776665443337778777778888999999999875 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   5.5e-07     0.002       4      89 ..     301     394 ..     299     405 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 5.5e-07
  HATPase_c_5   4 ldlcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg..........ek..kklesskskkeehGiGlksireivkkykgnlsiea 89 
                    l + + nl +N i  + +    +  +r+t r++ ++++is+  +  g          e   +  + +++ ++  G+Gl  +++i+++++g ++++ 
   KIR62867.1 301 AQLATAVANLVENGITYSGE----DTTVRVTTRSDGEHVTISVADQGIGiaptdverifERfyRADQARSRATGGTGLGLAIVKHIASNHGGRVEVSS 394
                  57888999999999976655....679******************97776666665444114344446678899******************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3158.71
//
Query:       KIR62868.1  [L=227]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-29  100.2   0.0    1.1e-28   99.7   0.0    1.2  1  Response_reg  Response regulator receiver domain
    1.2e-28   99.0   0.2    3.7e-28   97.4   0.0    1.8  2  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.0   1.2e-32   1.1e-28       1     112 []       4     113 ..       4     113 .. 0.99

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 1.2e-32
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vl+v+D++ + ++l+ +l++eg+ ev +a++g +al  +++   d++llD+++p+m+G e+++++r+++ ++p+i++ta+++e d+v +l++gadd+
    KIR62868.1   4 VLVVEDEESFSDALSYMLRKEGF-EVSVAATGPSALTEFDRTGADIVLLDLMLPEMSGTEVCRQLRQRS-HVPIIMVTARDSEIDKVVGLEIGADDY 98 
                   8**********************.*******************************************99.*************************** PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   ++Kp++p+eL+++++
    KIR62868.1  99 VTKPYSPRELVARIR 113
                   ***********9985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       0.4   3.6e+03      49      60 ..     108     119 ..     104     124 .. 0.78
   2 !   97.4   0.0   4.1e-32   3.7e-28       3      77 .]     151     225 ..     149     225 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.4
                  HHHHHHHHHHTT CS
  Trans_reg_C  49 hisrLRkkLedd 60 
                   ++r+R  L+ +
   KIR62868.1 108 LVARIRAVLRRQ 119
                  589999999884 PP

  == domain 2  score: 97.4 bits;  conditional E-value: 4.1e-32
                  EEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   3 eveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  +v+l  kef+lLelLl+n+grv++r +L+++vwg d+ +d++t+dvh++rLR k+e+++++pr+I tvrg GY++
   KIR62868.1 151 TVQLPLKEFELLELLLRNAGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEPEPSAPRFIVTVRGLGYKF 225
                  689999*******************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1479.71
//
Query:       KIR62869.1  [L=268]
Description: hypothetical protein TK50_18180 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1920.17
//
Query:       KIR62870.1  [L=314]
Description: hypothetical protein TK50_18185 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-63  215.2   0.0    1.5e-63  214.9   0.0    1.0  1  Ppx-GppA        Ppx/GppA phosphatase family
     0.0043   17.4   0.9       0.29   11.6   0.0    2.4  2  K-cyclin_vir_C  K cyclin, C terminal
  ------ inclusion threshold ------
      0.023   15.1   0.1        3.5    8.1   0.0    2.6  2  FtsA            Cell division protein FtsA
      0.024   14.9   0.3      0.039   14.2   0.3    1.3  1  DUF4142         Domain of unknown function (DUF4142)


Domain annotation for each model (and alignments):
>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.9   0.0   3.4e-67   1.5e-63       2     284 ..      18     310 ..      17     311 .. 0.97

  Alignments for each domain:
  == domain 1  score: 214.9 bits;  conditional E-value: 3.4e-67
                 EEEECTTEEEEEEEEEEE--CCCCCHCCSSC-HHHHHHHHHHHHHHHHHCCCTTGCCEEEEEEHHHHHSTTHHHHHHHHCCCCSS-EEEE-HHHHHHHH CS
    Ppx-GppA   2 iarkaagllqivarekrkvrLaeglnesgrlqeeaiertisaLkefaellqkfkvenvrvVATsalRdavNadeFlarvkkevglkveiisgeeEarli 100
                 ++++   ++ + ++ek+ +rLae+   +g+l+e+ ++ ++ a +     ++ +++  + ++ATsa+Rda Na e+larv++++g+ +e++sg++Ear++
  KIR62870.1  18 VDAHHGAHPWPAHSEKVVLRLAEQIGPDGALTEAGADGLVRAVDAARASATRLGSDDLLAFATSAVRDATNAAEVLARVREATGVRLEVLSGADEARMT 116
                 6666677788999************************************************************************************** PP

                 HHHHHHHT.---SSEEEEEEETTEEEEEEEETTEEEEEEEES--CCHHHHHHSGCC.....C--HHHHHHHHHHHHHHCTTTHHHHCCCEHHCCCCCCC CS
    Ppx-GppA 101 ylgvvssl.lekgrglviDiGGGStElvlgeekevsklvSlplGavrlterfltdd.....pltkeeveaarkavekeleevkdevkkegewtrlvgts 193
                 +l+v++++ +++gr l +DiGGGS+E++ g+++++  +vSlplGa+rlt++ l  d     p+ + +v+++r++v+  l +v++++ + g w r v+ts
  KIR62870.1 117 FLAVRRWFgWSAGRLLALDIGGGSLEIAAGIDEDPDVAVSLPLGAGRLTRDRLRIDpdgaePPPAGAVAELREYVDGLLDPVVEKMAEVG-WERPVATS 214
                 ***************************************************999886677788888************************.******** PP

                 HCCHHCHHHHHHCT.S.....SCEEEHHHHHHHHHHHCTSSCHHHHHSTTS-CCHHCTHHHHHHHHHHHHHHCT-SEEEEES--HHHHHHHHHHHH CS
    Ppx-GppA 194 gtisalaeltelhgek.....gyeitaeeleeliekllqlkkeeelklagvsdeRadvivagalilsavlealeieaviisegalrEGvlyslllk 284
                 +t+++la+l  ++++       +++t+  l++++ ++ ++   +  +l+gvs +Ra +++aga++++avl+ l   a+ i+++alrEGv+++ l++
  KIR62870.1 215 KTFRTLARLAGAAPSGaglwaRRSLTRDGLRQVLGFVRHIPPRHLSELEGVSVGRAHQLLAGAVVAEAVLRRLDVPALDICPWALREGVILRQLDR 310
                 **************889**************************************************************************99976 PP

>> K-cyclin_vir_C  K cyclin, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   6.4e-05      0.29      62      99 ..      23      60 ..       8      65 .. 0.84
   2 ?    4.2   0.1     0.013        58      58      97 ..      76     116 ..      65     121 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.4e-05
  K-cyclin_vir_C 62 aviPqdahsggvvprlaeilGvdvavlaaavesvltsl 99
                     + P +ahs  vv rlae +G d a  +a ++ ++ ++
      KIR62870.1 23 GAHPWPAHSEKVVLRLAEQIGPDGALTEAGADGLVRAV 60
                    47899********************9999998776655 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.013
  K-cyclin_vir_C  58 lvlaa.viPqdahsggvvprlaeilGvdvavlaaavesvlt 97 
                     l+ a+ ++ + ++++ v+ r+ e+ Gv   vl+ a e  +t
      KIR62870.1  76 LAFATsAVRDATNAAEVLARVREATGVRLEVLSGADEARMT 116
                     55554044555677899*****************9998776 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.012        53       2      52 ..       5      67 ..       4     100 .. 0.60
   2 ?    8.1   0.0   0.00079       3.5       2      36 ..     133     167 ..     132     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.012
                EEEE-SSSEEEEEEETTEEEE.............EEEES-..-HHHHHHHHHHHHT--HHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx.............xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  2 lvDiGagktdvavaedgalvh.............lrvigv..ggngitkdiakalrtaveeAerik 52
                ++D+G++++ ++v++ ++ +h              +      +   +t+  a +l  av++A   +
  KIR62870.1  5 VLDVGSNTVHLLVVDAHHGAHpwpahsekvvlrlAE---QigPDGALTEAGADGLVRAVDAARASA 67
                79***********99876444555445444422222...133223344444444444444444444 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00079
                 EEEE-SSSEEEEEEETTEEEEEEEES--HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA   2 lvDiGagktdvavaedgalvhlrvigvggngitkd 36 
                 ++DiG+g+ ++a + d+ +    ++++g+  +t+d
  KIR62870.1 133 ALDIGGGSLEIAAGIDEDPDVAVSLPLGAGRLTRD 167
                 79**************************9999999 PP

>> DUF4142  Domain of unknown function (DUF4142)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   8.7e-06     0.039      13      74 ..      55     113 ..      44     121 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.7e-06
     DUF4142  13 aglfeveaaklAlqkaknpevkaFAqqmvadhtkaneeLkalaskkgvtlpdsteldaeaqa 74 
                 + +  v+aa+  +++  +++  aFA   v+d t+a+e L+++ ++ gv l+    l+ +++a
  KIR62870.1  55 GLVRAVDAARASATRLGSDDLLAFATSAVRDATNAAEVLARVREATGVRLEV---LSGADEA 113
                 4456899******************************************994...5555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2200.83
//
Query:       KIR62871.1  [L=189]
Description: hypothetical protein TK50_18195 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-12   44.9  13.8    1.3e-11   44.2  13.8    1.3  1  zf-CGNR   CGNR zinc finger
    1.4e-05   25.7   9.6    2.8e-05   24.8   9.5    1.7  1  ABATE     Putative stress-induced transcription regulator


Domain annotation for each model (and alignments):
>> zf-CGNR  CGNR zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2  13.8   1.4e-15   1.3e-11       1      44 []     128     170 ..     128     170 .. 0.98

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 1.4e-15
                 GEEE--STT---EEE--SSS-----SSHH.HHHHHHHHTTTT-X CS
     zf-CGNR   1 RlkaCaapdCrwvfvDtSrngsrrWCsmraCGnrakvrrhraRr 44 
                 R+++Ca+++C+ v++DtS n  rr+Cs r C++r +v++hraR+
  KIR62871.1 128 RFGVCADERCGNVYLDTSSNCCRRFCSER-CATRSHVAAHRARK 170
                 899**************************.*************6 PP

>> ABATE  Putative stress-induced transcription regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   9.5   3.1e-09   2.8e-05       5     117 ..      11     108 ..       7     188 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 3.1e-09
                 HHHHHH----HHHHHHHTTT-HHHHHH--TTHHHHHH..........HHHHHHHHHHHHHHT.HHHH.........HHHHHHHHHS----EEEE-TTS- CS
       ABATE   5 ldlvNTrargggrraDlLttpadLaaWleaagllpagtaaagadaelararaLRealralla.aaaagdpppaaalaalnallaaappaprLvrhddgp 102
                 +dlvN           +L++ +dL+a   +     a   + +ad++la +r+   +lr++++  +    + + +a+a+lnall a p++pr++ hd+ +
  KIR62871.1  11 VDLVNA----------RLDDLDDLRALFPD---ENAWMRDEVADRDLAIFRRAQKRLRDVFDyGT---SGRDIEAVAELNALLEAYPVQPRISGHDSSD 93 
                 788888..........67777777777776...22333334444499**************9333...45799***********************888 PP

                 E...........EEES CS
       ABATE 103 vdrardwhl.lallat 117
                 ++ + ++++   + a+
  KIR62871.1  94 WHMHVTSRGaS-VSAE 108
                 77765555433.3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1405.40
//
Query:       KIR62872.1  [L=388]
Description: glutathionylspermidine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-137  459.4   0.0   1.1e-137  459.2   0.0    1.0  1  GSP_synth  Glutathionylspermidine synthase preATP-grasp


Domain annotation for each model (and alignments):
>> GSP_synth  Glutathionylspermidine synthase preATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  459.2   0.0  6.3e-142  1.1e-137       1     378 []      12     382 ..      12     382 .. 0.97

  Alignments for each domain:
  == domain 1  score: 459.2 bits;  conditional E-value: 6.3e-142
   GSP_synth   1 weekleeegftfht.....edgepYwdesaayaftlaeveeleeateelhqmcleaaeevveeeellarlgipeellelireSwerrepsLygRfDlay 94 
                 w++++ ++g+++ +     +   +Ywde+aay f l+ev +leeat+elh+mc++aae+vv++  ++a++gip +++e++++S++++ psLygRfDl+y
  KIR62872.1  12 WDATVRSQGLVYVDtelpdGGIVSYWDETAAYVFGLEEVLRLEEATAELHRMCVAAAEHVVARG-RYAEFGIPGWAAEAVARSLREKPPSLYGRFDLCY 109
                 89999*******998887766789***************************************9.********************************** PP

   GSP_synth  95 dGkgpakllEyNaDTPTsLlEaavvqwlwledqreagelkeeadqfnslhealverfke..ltleeekeklhfsavedseEDratvayLqdtakeagle 191
                 dG+ p+kllEyNaDTPTsL+Ea++vqw wle+      + ++adq+nslhe+lv+++++  + l++++ ++++s+ e+s ED+ t+ yL++ta++agl+
  KIR62872.1 110 DGSWPPKLLEYNADTPTSLVEASIVQWFWLEE------TRPAADQWNSLHERLVAAWARigAGLHDDRVHVVWSSEEESGEDQITAGYLAETARQAGLK 202
                 ********************************......79*******************643566999******************************* PP

   GSP_synth 192 teflpiedigldeeegrfvdadgrkiellfkLyPwEwlvedefgeelaeallevrllePawklllsnKalLallWelypghpnLLpayfeedeeeekgk 290
                 +e+lpi+dig+d   +rfvda + +++++fkLyPwEw++++ +g+   e  + ++++ePawklllsnKalLa+lWel+pgh++LLpay+   +++ +++
  KIR62872.1 203 AELLPIQDIGWD--GRRFVDAADGPVTTCFKLYPWEWMLAEPYGPLALEPGTPTTWIEPAWKLLLSNKALLAVLWELFPGHEYLLPAYL---DSPRQMT 296
                 ************..69**********************************999************************************...56789** PP

   GSP_synth 291 kyvkKplfgREGanveiveegsevaeekegeygeekviyQeyaelpkfdgsypvlgswlvgdeaaGlgiRedrglitdnlsrFvPhli 378
                 +yv+Kpl+gREG +v+iv++ +ev++  + +yg+e+++yQe+  lp+fdg++ vlgsw+v++e+aG g+Re+++litdn++rF+Ph+i
  KIR62872.1 297 EYVAKPLLGREGGSVRIVTPAGEVSN--PSDYGDEGFCYQEFRALPSFDGNHVVLGSWIVDGEPAGAGLRESTSLITDNYARFLPHYI 382
                 ********************999965..589*******************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2870.44
//
Query:       KIR62873.1  [L=306]
Description: proline dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-29  102.6   0.0      4e-29  102.1   0.0    1.2  1  Pro_dh    Proline dehydrogenase


Domain annotation for each model (and alignments):
>> Pro_dh  Proline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.0   2.2e-33     4e-29       3     294 ..      43     298 ..      41     300 .. 0.89

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 2.2e-33
                 HHHHHHHHTTEEEEEEES-SS--SHHHHHHHHHHHHHHHHHHHHHHCCS-TTCC-SEEE-GGG..TT-SGGGHHHHHHHHHHHHHHHHHHHHHTT-EEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh   3 ktieklkkrgvrlsldllgeavlteedadryleayleaiksiekaskalkvleapgvsvklsa..prletaeeeevmeelverlrtlakeakelgvrll 99 
                 +++++l ++g++++ld lge ++t+e+a ++ ++yl+++  +++a        a +vsvklsa  +r++     e  + ++++ r+++++a e+g+ ++
  KIR62873.1  43 RATRELVAEGLAVTLDNLGEDTVTAEQATATRDEYLKLLGLLSAAGL----TPAAEVSVKLSAlgQRFD-----E--RLAYDNARAICAAADEAGTTVT 130
                 567788878*******************************9977665....45888******9544333.....2..356899**************** PP

                 E----GGGHHHHHHHHHHHHHSCCTTT---EEEEEETTBTTHHHHHHHHHHHHHHTTS-EEEEEE--S-HHHHHHHHHHTT-S-SB-SSHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh 100 iDaEeaklqeltlelfrklnkepelkdwevvgntyQaYlkdalevlqkllelAeregfrlgvkLVrGAYldsErkraqelgyespifdtkeeTDanYda 198
                 +D+E+++  + tl+ +++l k+         g ++QaYl+++++++++l+   +       v+L +GAY + E             ++   e D++Y +
  KIR62873.1 131 LDMEDHTTTDSTLDTLARLRKDFPA-----TGAVLQAYLRRTESDCRELAYAGS------RVRLCKGAYREPESV----------AYQAAREVDKSYVR 208
                 ********************75555.....9**************998876655......59*******999988..........58999********* PP

                 HHHHHHHTTTTEEEEEE-S-HHHHHHHHHHHHHT..T--GGGEEEEEETTSSHHHHHHHHHTTS-EEEEEEECEHHHHHHHHHHHHHHHH-TT-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh 199 vaelllenrdeiypavAsHNaesvakalalaeelgqekeksevefqqLlGMadnlsfalakagynvrkYlPvGpveevlpYLvRRleENtanssft 294
                 +++ l++   + +p++A+H  + +a     a+    ++  +++efq+L+G   + +  l   gy vr YlP+G+  +   YL+RRl E  an+ f 
  KIR62873.1 209 CLNILMS--GDGFPMLATHDPRLIAIGEDRARWF--DRGPERFEFQMLYGIRPEEQARLVGDGYTVRTYLPYGT--DWYGYLMRRLAERPANLAFF 298
                 *****95..578**********999998888888..9999*********************************7..99**********99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2272.44
//
Query:       KIR62874.1  [L=266]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.2e-19   68.9  17.1    1.1e-18   68.6  17.1    1.0  1  Abhydrolase_6  Alpha/beta hydrolase family
      3e-18   66.4   0.5    1.2e-16   61.1   0.5    2.0  1  Abhydrolase_1  alpha/beta hydrolase fold
    4.8e-17   62.0   0.5    9.5e-17   61.1   0.5    1.4  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0021   17.6   0.9        2.5    7.5   0.0    2.7  2  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.029   14.5   0.0      0.057   13.5   0.0    1.4  1  Abhydrolase_4  TAP-like protein
       0.03   13.8   0.0       0.25   10.8   0.0    2.5  2  AP_endonuc_2   Xylose isomerase-like TIM barrel
      0.031   13.9   1.0       0.11   12.1   1.0    2.0  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
      0.048   12.2   0.1      0.073   11.6   0.1    1.2  1  PAF-AH_p_II    Platelet-activating factor acetylhydrolase, is


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6  17.1     5e-22   1.1e-18       1     219 [.      24     254 ..      24     255 .. 0.62

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 5e-22
                    EEEE--GC.....GCHHHHHHHHCCT.CEEEEE--TTSTS-GGCS--HHHCHHH....HHHHCCTT..TTSEEEEEET.CHHHHHHHHHHCC..EE CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaag.vhvlapDlpGhGrsdpppldledladl....aalldelaagggpvvlvGHS.lGGalalaaaplalvvg 90 
                    v+l+HG g ++ +++  +L++ll +  ++v ++D +GhGrs+  + ++++ a++    +a++++l  gggp+ lvG S  G+a++ aaa+++++vg
     KIR62874.1  24 VVLAHGMGENRAAYR--HLVPLLVDAgYRVASVDVRGHGRSSAGWPTYAP-AEVggdlLAVVRAL--GGGPATLVGSSsSGAAVVFAAADAPDLVG 114
                    8*****999999997..7755555555999********************.55553337777777..69999******788888888888889999 PP

                    .EEES-..----TTT.S----TTHHHHHHTT-C.CCCHCCHS-HSCCCCHHH.....CCCCHCHCCCGHHHHCCHHC..HTTCCHHTT-TTGC... CS
  Abhydrolase_6  91 .vlldppptalpagl.laaalelllallallrl.lawlsreplprlfladed.....adaawrarlarlaallaglg..llpaaawadlpvpl... 173
                     ++  +   a+ +   l+++l+l+ a+  + ++ ++++     + lf ++ +     ++ a +a+l+++ + +a++g  + + ++w+++ + +   
     KIR62874.1 115 aIVQVG---AFVTERkLNPVLRLAVAAVLRSPRlFGMF----HRSLFPSGRPadyaaYRKAMVANLREPGRMAAMRGvaAPAEPHWTTRAPEVrqp 203
                    655555...33333345555555554444333322222....111333333311111245555555555566665553211233444444444555 PP

                    .EEE.CTT-C......HHHHCHHCCCH.STTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 174 .lvl.ggeDp......lvprllerlla.qagarlpvvlpgaGHlphleepdevae 219
                     lvl g++Dp      +    ++++ +  a a+    + ++GH+ph ++p+e+a+
     KIR62874.1 204 vLVLmGTKDPdfpdpgA---EARAARRlFATAEA-RMIDDSGHYPHADRPAETAA 254
                    455559****6653332...33333335578888.9999*************997 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.5   5.4e-20   1.2e-16       1     256 [.      22     248 ..      22     249 .. 0.87

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 5.4e-20
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeype 96 
                    p++v+ hG++++   ++   l+p L ++g++v  +D+rG+g+Ss+++     +y  a v  dl +++ alg ++ tlvG S  G+ +  +aa++p+
     KIR62874.1  22 PLVVLAHGMGENRAAYRH--LVPLLVDAGYRVASVDVRGHGRSSAGWP----TYAPAEVGGDLLAVVRALGGGPATLVGSSSSGAAVVFAAADAPD 111
                    78****************..***************************5....6******************************************* PP

                    GEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHH CS
  Abhydrolase_1  97 rVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksieqw 192
                     V a+v +ga   +   +++++  +  +   ++  +  +   ++   +++++    +r         + ++ ++++ g++ a+ +++    +  +w
     KIR62874.1 112 LVGAIVQVGA---FVTERKLNPVLRLAVAAVLRSPRLFGMFHRSLFPSGRPADYAAYR---------KAMVANLREPGRMAAMRGVAAP--AEPHW 193
                    **********...888888888888888888888888888888888888888888888.........8888888888888888888766..66777 PP

                    HHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCH.HHHHHHHHC.HTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 193 pttdsaklllrlrelknvlaptlvisgtsDplvpp.kaledlaql.lpkkrlvvisdagHlafleg 256
                    +t++   ++           p+lv+ gt+Dp +p+ +a  + a+  +  ++ + i+d+gH+ + ++
     KIR62874.1 194 TTRAPEVRQ-----------PVLVLMGTKDPDFPDpGAEARAARRlFATAEARMIDDSGHYPHADR 248
                    777775544...........99********999998655555555588899999999999988765 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.5   4.2e-20   9.5e-17       6     237 ..      23     247 ..      20     249 .. 0.72

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 4.2e-20
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse.gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkva 102
                  +vvl+HG++e   +y +l+  L+++G+ v+ +D rGhGrs  g  +      ++  Dl a+v+++     + p +l+G S  G+ ++ ++++ pd v 
   KIR62874.1  23 LVVLAHGMGENRAAYRHLVPLLVDAGYRVASVDVRGHGRSSaG--WPTYAPAEVGGDLLAVVRALG----GGPATLVGSSSSGAAVVFAAADAPDLVG 114
                  69**************************************433..3344557999***99998777....8899999998888777778888899677 PP

  Hydrolase_4 103 glilsaPalkikaklkappllklllkllgkllpklqvsnnlkadslsrdpevvaayeadplv..hgkitvrlllelld.amkrleeraakitlPllll 197
                  +++ +++++  ++   ++p+l+l+   + +  p+l   + + + + s  p+  aay++      ++  ++  ++++   a  + ++ra++++ P+l+l
   KIR62874.1 115 AIVQVGAFVTERK---LNPVLRLAVAAVLRS-PRLFG-MFHRSLFPSGRPADYAAYRKAMVAnlREPGRMAAMRGVAApAEPHWTTRAPEVRQPVLVL 207
                  8888888887774...677777633333332.22222.3445555566666666666655544344455555555555145578899*********** PP

  Hydrolase_4 198 hGeaDkvvdpeasrelyerlgskdktlklypglyHellnE 237
                  +G++D+  +  ++++ ++r   +  + ++++   H  + +
   KIR62874.1 208 MGTKDPDFPDPGAEARAARRLFATAEARMIDDSGHYPHAD 247
                  *****97766666555555555688888888888877765 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.8    0.0012       2.6       4      35 ..      38      69 ..      35     127 .. 0.66
   2 !    7.5   0.0    0.0011       2.5     142     208 ..     200     263 ..     169     266 .] 0.75

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0012
                  -HHHHHHHCCT-EEEEE--TTSSTTHCHHHHT CS
  Peptidase_S9  4 sselqlladrGyvvvvanirGsggyGeafhda 35
                  ++ + ll d+Gy v+ +++rG g  +  +   
    KIR62874.1 38 RHLVPLLVDAGYRVASVDVRGHGRSSAGWPTY 69
                  56677899***************999988664 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0011
                   ---EEEEEEETT-SSS-.THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHH.HHHHHHHHHHHHH CS
  Peptidase_S9 142 aypplLlihGlaDdrvp.paealklvaaLqkkgknvlllifpdegHgvgkprakv.eelarllaFlkea 208
                   + +p+L+++G++D   p p   ++ +++L     +++ ++  d+gH  + + ++  e  a+l+aFlk +
    KIR62874.1 200 VRQPVLVLMGTKDPDFPdPGAEARAARRL---FATAEARMIDDSGH--YPHADRPaETAAQLVAFLKAT 263
                   778***********996233344455555...5578999*******..444445559999999999875 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.5e-05     0.057      22      83 ..     188     253 ..     177     263 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-05
  Abhydrolase_4  22 pqrprdestakg.aapvLllqnerDpaTPyegak..klakalggavlvtvegeGHgala.agntCv 83 
                    p++p++++ a++  +pvL+l ++ Dp  P  ga+  ++++ +  a+  + +++GH   a ++ + +
     KIR62874.1 188 PAEPHWTTRAPEvRQPVLVLMGTKDPDFPDPGAEarAARRLFATAEARMIDDSGHYPHAdRPAETA 253
                    56677777776636*************998776511566667778888888888876655555555 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.23   5.3e+02     119     136 ..       5      22 ..       3      36 .. 0.85
   2 ?   10.8   0.0   0.00011      0.25      93     136 ..     138     196 ..      14     215 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.23
                   HHHHHTSEEEEE--TTTT CS
  AP_endonuc_2 119 yaekegvklalEtlagsg 136
                   y e+ g ++a+E + + +
    KIR62874.1   5 YVERDGGRIAYEVHGEGP 22 
                   78999*********9876 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00011
                   C...............GBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTT CS
  AP_endonuc_2  93 t...............agagpkgseeeawerlaeslneladyaekegvklalEtlagsg 136
                                   +++g + ++++ ++ ++++l+e +++a+ +gv   +E+++ + 
    KIR62874.1 138 AvlrsprlfgmfhrslFPSGRPADYAAYRKAMVANLREPGRMAAMRGVAAPAEPHWTTR 196
                   04444444444444777889999********************************9876 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.0     5e-05      0.11      52     133 ..      37     120 ..       7     220 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5e-05
                    H......HHHTT-EEEEEE-TTSTTS-.S---TTTTTHHHHHHHHHHHHHHCTTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEEEC CS
  Peptidase_S15  52 v......fvarGYavVvqdvrGtggSe.GeftvgdsdeaedgadvidWlakqpwsnGkVgmtGiSYlGttqllaaatgvpalkaivpea 133
                           +v+ GY v  +dvrG+g S  G  t +  +   d  +v++ l +          +G+S +G   + aaa++++ + aiv + 
     KIR62874.1  37 YrhlvplLVDAGYRVASVDVRGHGRSSaGWPTYAPAEVGGDLLAVVRALGGG-----PATLVGSSSSGAAVVFAAADAPDLVGAIVQVG 120
                    144555599**************98651666664444456888888766664.....45688999999999999998877777777655 PP

>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   3.3e-05     0.073      99     138 ..      20      59 ..      13      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.3e-05
                  -EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS CS
  PAF-AH_p_II  99 kyPlivFsHGLgafRtlYsalcielAskGfvvaavEHrDe 138
                  + Pl+v +HG+g  R+ Y  l   l   G+ va+v+ r +
   KIR62874.1  20 EGPLVVLAHGMGENRAAYRHLVPLLVDAGYRVASVDVRGH 59 
                  56********************************997754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.34
# Mc/sec: 2323.48
//
Query:       KIR62875.1  [L=190]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-25   90.3   6.1    1.1e-25   90.3   6.1    2.0  2  TetR_C_33  Tetracyclin repressor-like, C-terminal domain
    6.5e-05   22.6   3.7    7.4e-05   22.5   0.1    2.7  2  TetR_N     Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> TetR_C_33  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.6      0.25   2.2e+03      36      54 ..      54      72 ..      28      81 .. 0.54
   2 !   90.3   6.1   1.3e-29   1.1e-25       1     103 [.      82     178 ..      82     179 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.25
                HCCCCHHHHHHHHHHHGGG CS
   TetR_C_33 36 laaagarvlalllaalaal 54
                +++ +a + a l++al  +
  KIR62875.1 54 TRKLAALATAELADALTSA 72
                3333333444444444433 PP

  == domain 2  score: 90.3 bits;  conditional E-value: 1.3e-29
                 HHHHHHHHHHHHHH-HHHHHHCCSS--TT-S-HGHHCCCCHHHHHHHHHHHGGG---TH--CCHHHHHHHHHHHHHHHHHHHHCTTTTSSS-HHHHHHH CS
   TetR_C_33   1 lralarayrrfAlahpaeYallfgspvpgyaapdelaaagarvlalllaalaalvaaglppadavaaaralwaalhGlvsLelfghfglpadpdalfer 99 
                 lra+a ayr++A++hp++Y +++  ++p+  +p +++aa+ r+++++ a+l+++   gl+++da++a+r+l++alhG+++Le++g+fglp+d+d++++r
  KIR62875.1  82 LRAVAAAYRDYARRHPGRYVAAQ--RAPDAGDP-DHVAAAGRAVGAIYAILRGY---GLDGDDAIDATRVLRSALHGFLALEAAGGFGLPRDVDRSYDR 174
                 79*********************..88888999.9*******************...**8888************************************ PP

                 HHHH CS
   TetR_C_33 100 lvda 103
                 lv+ 
  KIR62875.1 175 LVAG 178
                 *985 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   8.3e-09   7.4e-05       3      36 ..      13      46 ..      11      57 .. 0.91
   2 ?   -0.2   0.3     0.098   8.8e+02      24      34 ..     116     126 ..     113     127 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 8.3e-09
                HHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHH CS
      TetR_N  3 daArelfaerGydattvreIAkrAGvskgalYry 36
                  A++l  e G d++t++++A r+Gv+ ++lY++
  KIR62875.1 13 REAARLADEVGLDQLTLAALAGRLGVALPSLYKH 46
                579******************************9 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.098
                 HHHTSSHHHHH CS
      TetR_N  24 krAGvskgalY 34 
                 ++AG + ga+Y
  KIR62875.1 116 AAAGRAVGAIY 126
                 799*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1280.14
//
Query:       KIR62876.1  [L=111]
Description: hypothetical protein TK50_18225 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-21   75.5  19.7    4.1e-21   75.1  19.7    1.2  1  DUF2568   Protein of unknown function (DUF2568)


Domain annotation for each model (and alignments):
>> DUF2568  Protein of unknown function (DUF2568)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1  19.7   2.3e-25   4.1e-21       1      91 [.       7      97 ..       7      98 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 2.3e-25
     DUF2568  1 llrFllElaalaalgvwGfrlgkgallkivlavllpllaavlWglfaaPkarvrlpgpvrlllellvfalaalalavaghptlalvfaava 91
                +l FllEla+l+a g+wGf+l  g++++i++++++p+l a++Wg+f+a ka+v+lpgp++l++++++f++++l+l++ag+p+ ++++++++
  KIR62876.1  7 ALIFLLELAVLVAGGWWGFTLDAGWAARIAAGIGAPVLLAAAWGVFGAQKAAVPLPGPAKLAFQAAWFVTGGLLLLLAGRPVHGAALVGLW 97
                589***********************************************************************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 793.80
//
Query:       KIR62877.1  [L=437]
Description: hypothetical protein TK50_18230 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3133.21
//
Query:       KIR62878.1  [L=152]
Description: hypothetical protein TK50_18235 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1117.56
//
Query:       KIR62879.1  [L=291]
Description: hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-27   96.4   1.4    4.1e-27   95.8   1.4    1.3  1  HAD              haloacid dehalogenase-like hydrolase
    1.1e-05   25.3   0.0    1.8e-05   24.6   0.0    1.3  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
     0.0063   16.8   3.0     0.0084   16.4   0.7    2.2  2  Hydrolase        haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.14   12.1   1.6       0.32   11.0   1.6    1.6  1  Gram_pos_anchor  LPXTG cell wall anchor motif


Domain annotation for each model (and alignments):
>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   1.4   9.2e-31   4.1e-27       1     187 [.      39     225 ..      39     226 .. 0.89

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 9.2e-31
         HAD   1 alfDfDgTLldgdslelllrfllrrgaprlwralreklllal...frellrldraglaelleallagls.eelaaelerfvaevirpklldpgalella 95 
                 a+fD+D T ++g s+++++r l++r+   +++++r ++ + +   +++    d ++++e+  a+ +g + +++++ +e++++e  +p+++  g ++l +
  KIR62879.1  39 AFFDVDNTMMQGASIYWFARGLAARNYFTTGDLARFAWQQLRfrvLATEHAGDMSQAKEAALAFIEGWRvDDVERLAEEIFDELMAPRIW-AGTRRLAQ 136
                 8*******************9999999998777777766666444444555567888999999999999999999999999999999999.89999999 PP

         HAD  96 ahraaGdrvvvvSgglrplvepllaelgadevlatelevdd.rltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpll 187
                 +h++aG rv++vS+++ ++ + ++ +lg    ++t  ev+d  +tg+  l g++ +g +k+ a+ +   a+ eg+dl+++ ay+Ds +Dlp+l
  KIR62879.1 137 RHLDAGERVWLVSAAPVEIGRVIASRLGLTGAIGTVAEVVDgAYTGR--LVGDLMHGPAKAEAVTQ--LAAVEGLDLARCSAYSDSANDLPML 225
                 ****************************9999***999*9*******..*****************..88888899999*************9 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.1e-09   1.8e-05     185     229 ..     191     235 ..     181     244 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 4.1e-09
                  T-SHHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEET CS
  Hydrolase_3 185 gvsKgtalkklakelnisleeviafGDgeNDieMLeaaglgvAmg 229
                  g  K++a+++la   +++l+++ a  D+ ND++ML+a+g++vA++
   KIR62879.1 191 GPAKAEAVTQLAAVEGLDLARCSAYSDSANDLPMLSAVGRAVAVN 235
                  557****************************************96 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.7   1.9e-06    0.0084     104     210 .]     110     229 ..      36     229 .. 0.61
   2 ?   -1.4   0.1      0.52   2.3e+03      45      73 ..     239     265 ..     238     281 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.9e-06
                 TTHHHHHHHHH..HTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT....GGGESEEEEHHCESSTTT..............SHHHHHHH CS
                 xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxx..............xxxxxxxx RF
   Hydrolase 104 qaralavftia..dplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG....ddyfdaviasdietvakp..............spegkvaa 182
                 + + la+  +      +++ +++ + ++  +ag +v+l++    e  + +a++lG                 tva++              +  +k +a
  KIR62879.1 110 DVERLAEEIFDelMAPRIWAGTRRLAQRHLDAGERVWLVSAAPVEIGRVIASRLGltgaI-----------GTVAEVvdgaytgrlvgdlmHGPAKAEA 197
                 33333333333123334777777666666678888********************55542...........4444444444555555555655555555 PP

                 HHHHT....STGGGEEEEESSHHHHHHHHHTT CS
                 xxxxx....xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 183 ireLq....gkpeevamVGDgvnDaaalaaAg 210
                 + +L      + +++ +  D++nD+++l a+g
  KIR62879.1 198 VTQLAavegLDLARCSAYSDSANDLPMLSAVG 229
                 55553333399*****************9987 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHHHHHHHHETTTEHHHHTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  45 alvaaakarsgaltgfatfigrgayaigk 73 
                 al ++a +r++++ +f+t  gr a+ i  
  KIR62879.1 239 ALLRQARQRGWEVRDFRT--GRRAVKIAV 265
                 67889999999**9*999..777555554 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.6   7.2e-05      0.32      18      41 ..     266     289 ..     256     290 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.2e-05
                      XXXXXXXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor  18 ifltaaGllallggllLlvkrRKk 41 
                      +++ aaGlla ++g++ ++ +R++
       KIR62879.1 266 PSTAAAGLLAGAVGAGMALQKRRR 289
                      6899*************6666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2103.79
//
Query:       KIR62880.1  [L=308]
Description: hypothetical protein TK50_18260 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2253.93
//
Query:       KIR62881.1  [L=322]
Description: RNA polymerase subunit sigma-24 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-17   61.1   0.8    5.2e-16   58.2   1.0    2.3  2  Sigma70_r2       Sigma-70 region 2
      2e-12   46.6   0.1    3.4e-12   45.9   0.1    1.4  1  Sigma70_r4_2     Sigma-70, region 4
    7.7e-10   38.1   0.1    1.6e-09   37.2   0.1    1.6  1  Sigma70_r4       Sigma-70, region 4
    1.6e-07   31.4   0.2    2.6e-07   30.7   0.2    1.3  1  Sigma70_ECF      ECF sigma factor
  ------ inclusion threshold ------
      0.011   15.5   0.0       0.03   14.1   0.0    1.7  1  HTH_38           Helix-turn-helix domain
       0.25   11.3   0.0        1.9    8.4   0.0    2.0  2  Phage_antitermQ  Phage antitermination protein Q


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   1.0   1.7e-19   5.2e-16       1      68 [.     158     224 ..     158     227 .. 0.96
   2 ?   -0.9   0.0      0.49   1.5e+03      29      45 ..     257     273 ..     254     275 .. 0.85

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.7e-19
                 HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTS CS
  Sigma70_r2   1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkr 68 
                 +++ry + v+r+++ ++g+++ aeDl++++flr+++++ +f+  +g++++awl++iarn++ d++++ 
  KIR62881.1 158 IYDRYVDTVFRFVYFRVGNRQLAEDLTSDTFLRALKRIGSFT-WQGRDLGAWLVTIARNLVADHFKSG 224
                 589***************************************.*********************9875 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.49
                 HHHHHHHHHGGGTSTTT CS
  Sigma70_r2  29 eaflrlwraverfdper 45 
                 +++++l+ av++++pe+
  KIR62881.1 257 ITNVALLTAVKQLNPEQ 273
                 789999*****999986 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.1   1.1e-15   3.4e-12       3      54 .]     261     312 ..     259     312 .. 0.96

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 1.1e-15
                   HHHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   3 alrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   al++a+ +L ++q+e+++lr+l+g+s +E+A+ +g +eg++k   +RA ++L
    KIR62881.1 261 ALLTAVKQLNPEQQECIVLRFLQGFSVAETARAMGKNEGAIKALQYRAVRAL 312
                   899*********************************************9987 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.1   5.3e-13   1.6e-09       2      48 ..     266     312 ..     265     314 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 5.3e-13
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                  ++L+++++e+++lrf++g + +E+++ +g  +++++ ++ rA+r L
  KIR62881.1 266 VKQLNPEQQECIVLRFLQGFSVAETARAMGKNEGAIKALQYRAVRAL 312
                 589*****************************************998 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.2   8.8e-11   2.6e-07       2     169 ..     138     302 ..     137     314 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 8.8e-11
  Sigma70_ECF   2 eevtelleqvkdGdaeaaeqllelvydeLrrlagsklknerreetledtaLvfeaflrlvdkekfpdlsgrdhlfalaaeamrrilidhaRrrk..rq 97 
                  +ev +l+e  + G+aea   ++ ++ d + r +  ++ n +  e+l       + flr++++  +  ++grd l a ++++ r  + dh ++ +   +
   KIR62881.1 138 TEVWKLVERAQAGEAEAFGLIYDRYVDTVFRFVYFRVGNRQLAEDL-----TSDTFLRALKRIGSFTWQGRD-LGAWLVTIARNLVADHFKSGRyrLE 229
                  588899***************************9999998888876.....5699***************96.89999**********9986541044 PP

  Sigma70_ECF  98 kRGGdvvraeldeeedsvds..dspdelleLde..alerllsldpeqarlvelrkleGlsveEiAeklgvskrtve 169
                     Gdv  a+   +ed + +  +++  ++++ +   l+   +l+peq + + lr+l+G+sv+E+A ++g  + +++
   KIR62881.1 230 VTTGDVLDAD---REDRGPEgsPEAAVVEHITNvaLLTAVKQLNPEQQECIVLRFLQGFSVAETARAMGKNEGAIK 302
                  5678877666...444433322444444444432146666779*************************99888876 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     1e-05      0.03       3      35 ..     267     299 ..     266     302 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1e-05
      HTH_38   3 khLsleeReeIerllaeGlslreIArrLgrsps 35 
                 k+L++e+ e+I     +G s++e Ar +g++ +
  KIR62881.1 267 KQLNPEQQECIVLRFLQGFSVAETARAMGKNEG 299
                 89****************************976 PP

>> Phage_antitermQ  Phage antitermination protein Q
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.22   6.5e+02      52      77 ..     139     164 ..     121     185 .. 0.80
   2 ?    8.4   0.0   0.00064       1.9      58      96 ..     264     302 ..     257     309 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.22
  Phage_antitermQ  52 iidgcvarLkkkrpeelellvdyYvf 77 
                       + + v+r ++ ++e++ l+ d+Yv 
       KIR62881.1 139 EVWKLVERAQAGEAEAFGLIYDRYVD 164
                      566788999999999999****9996 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00064
  Phage_antitermQ  58 arLkkkrpeelellvdyYvfgvskraiarklkisekevr 96 
                      + +k+ +pe+ e +v +++ g s  + ar+++ +e++++
       KIR62881.1 264 TAVKQLNPEQQECIVLRFLQGFSVAETARAMGKNEGAIK 302
                      6789999****************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2369.42
//
Query:       KIR62882.1  [L=84]
Description: glutaredoxin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-16   58.8   0.0    6.1e-16   58.6   0.0    1.0  1  DUF836        Glutaredoxin-like domain (DUF836)
  ------ inclusion threshold ------
      0.019   15.2   0.0       0.03   14.5   0.0    1.4  1  Glutaredoxin  Glutaredoxin


Domain annotation for each model (and alignments):
>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   6.9e-20   6.1e-16       1      81 [.       6      79 ..       6      80 .. 0.94

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 6.9e-20
                -EEEEE-TT-HHHHHHHHHHHHHCCCTTEEEEEEETTT-CCCHCCCCTTTTEEEECTTCGGB.TCCECGCCB-HHHHHHHH CS
      DUF836  1 kltLyskpgChlCeqakekLkelkleegleleviDIakdeeleakYgleipvlalegvkktsslleelswrldeeqLaael 81
                +ltL+++pgChlCe+ak++L ++    g ++ + D+++d ele++Yg++ pv++l+g       +e+ +wr++ee+L ++l
  KIR62882.1  6 RLTLITRPGCHLCEDAKAALGRVVAVTGDRWIEKDVTTDVELEREYGDRLPVVLLDG-------KEHGYWRVEEERLLRDL 79
                59********************76666679***************************.......9************9988 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.3e-06      0.03       2      58 ..       8      63 ..       7      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.3e-06
                  EEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEEETTE CS
  Glutaredoxin  2 vlftkptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvfidgk 58
                  +l t+p+C  C  ak++L +  +    + ++kd     el++  g   +P+v  dgk
    KIR62882.1  8 TLITRPGCHLCEDAKAALGRVVAVTGDRWIEKDVTTDVELEREYG-DRLPVVLLDGK 63
                  6889**************998777789999999888888888889.99999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 735.07
//
Query:       KIR62883.1  [L=216]
Description: hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.9e-08   32.3   0.7    1.5e-07   31.4   0.7    1.4  1  Hydrolase_like  HAD-hyrolase-like
    2.4e-06   27.7   0.0    2.3e-05   24.6   0.0    2.0  1  HAD_2           Haloacid dehalogenase-like hydrolase
     0.0002   21.7   1.1      0.011   16.0   1.1    2.4  1  Hydrolase       haloacid dehalogenase-like hydrolase
    0.00088   19.7   4.1     0.0016   18.9   2.9    2.0  2  HAD             haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.076   12.7   0.0        1.5    8.5   0.2    2.2  2  MoCF_biosynth   Probable molybdopterin binding domain


Domain annotation for each model (and alignments):
>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.7   4.2e-11   1.5e-07       8      75 .]     145     208 ..     140     208 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 4.2e-11
                     HHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEES- CS
  Hydrolase_like   8 emydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddlaea 75 
                     e++  +l +lg+d ++v++iGD+  +D  +A  +G + vL++ G t++++l+   ++ + vad+l+ea
      KIR62883.1 145 ESLAKHLSELGLDGRAVVLIGDS-IDDADAAESVGGRAVLYTGGFTDATRLR---ASGHPVADTLTEA 208
                     5677788899*************.**************************99...7789999999986 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   6.4e-09   2.3e-05       2     176 ..       9     182 ..       8     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 6.4e-09
       HAD_2   2 iFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeeekieellrkyneekkk..kevkpydgvkelLeeLkeagykl 98 
                 ++D  gTll+  +l+++a+n ++++ g + ++ +e r  +  +  +++  +  +   +e + el r++++      +++++ d++  ++ +      + 
  KIR62883.1   9 VWDWNGTLLNDLDLVVAATNAAFASVGGPAVTADEHRVRFRRPIADYYAGVLGRAVDDEAFGELDRIFHDAYRSglTTCTLADDAAAAMSTW---PGSQ 104
                 79999********************************99999999*9999999999999777776666666666555788888888888887...5577 PP

       HAD_2  99 givTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvi 176
                  + +   ++++   +   g++  F  + +   + +   ++e+++k l +l+l+   v+ +GDs+ D  aa  +g +++
  KIR62883.1 105 SLLSMWFHDELVPAVHSYGLTGRFARVDGLRATVGGDRKAESLAKHLSELGLDGRAVVLIGDSIDDADAAESVGGRAV 182
                 899999*********************998776555446********************************9997765 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.1   3.2e-06     0.011     168     210 .]     136     178 ..       7     178 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.2e-06
                 CESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 168 ietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                  ++ +  + e + + + eL+ +++ v+ +GD++ Da a++ +g
  KIR62883.1 136 ATVGGDRKAESLAKHLSELGLDGRAVVLIGDSIDDADAAESVG 178
                 444566699999***************************9876 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   2.9   4.4e-07    0.0016       2     188 .]       9     175 ..       8     175 .. 0.68
   2 ?   -3.3   0.0       2.8   9.9e+03      85     104 ..     183     201 ..     178     202 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.4e-07
         HAD   2 lfDfDgTLldg.dslelllrfllrrgaprlwralreklllalfrellrldraglaelleallagls.eelaaelerfvaevirpk....lldpgalell 94 
                 ++D++gTLl++ d   + + +  ++ + ++            ++e   ++r+ +a  ++  l++   +e   el+r++++++r      +l  +a +++
  KIR62883.1   9 VWDWNGTLLNDlDLVVAATNAAFASVGGPA----------VTADEHRVRFRRPIADYYAGVLGRAVdDEAFGELDRIFHDAYRSGlttcTLADDAAAAM 97 
                 8**********8888877774444444333..........22333333333344444444444444455555555555555555533336778999999 PP

         HAD  95 aahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpllr 188
                 + +   G  + ++S  +   + p    +g    l  +++      +   +    v g+ k+ +l++     + g+d   vv +GDs+ D  +++
  KIR62883.1  98 STW--PG-SQSLLSMWFHDELVPAVHSYG----LTGRFA------RV-DGLRATVGGDRKAESLAK--HLSELGLDGRAVVLIGDSIDDADAAE 175
                 955..33.579******************....999444......44.4456677888999*****..77788888899**********98875 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.8
         HAD  85 lldpgalellaahraaGdrv 104
                 l++ g+ ++ +  ra G++v
  KIR62883.1 183 LYTGGFTDATR-LRASGHPV 201
                 56667777777.66888776 PP

>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.046   1.6e+02      72     141 ..      21     118 ..      14     121 .. 0.56
   2 ?    8.5   0.2   0.00041       1.5      16      66 ..     141     188 ..     132     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.046
                    --HHHHHHHHHSEE-HHHHHHHHHHHHHHCC..............................TTSHGGGGGGE.EETTEEEEE-SSHHHHHHHHHHH CS
  MoCF_biosynth  72 Dvtpealaklfekelegfeeafrrvslkpgk..............................pvgvapgailsravgktiigLPGspkavkealeei 137
                    D++++a++++f  ++ g +++ +  + ++++                                g+++++  ++a  + + + PGs++   + ++  
     KIR62883.1  21 DLVVAATNAAFA-SVGGPAVTADEHRVRFRRpiadyyagvlgravddeafgeldrifhdayRSGLTTCTLADDA-AAAMSTWPGSQSLLSMWFHDE 114
                    666666666666.3666666666666666664444455555555555555555555544554444444444433.334667788888777777776 PP

                    HHGG CS
  MoCF_biosynth 138 llpa 141
                    l+pa
     KIR62883.1 115 LVPA 118
                    6666 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00041
                    BHHHHHHHHHHHTTSEEEEEEEEE-SSHHHHHHHHHHHHHTSSEEEEESS- CS
  MoCF_biosynth  16 DtngpllaellkelgvevskytvvpDdeeeikeallaaleeadviittGGt 66 
                    D+ +  la+ l+elg++ +++ +++D +++  +a   +  + ++++ tGG 
     KIR62883.1 141 DRKAESLAKHLSELGLDGRAVVLIGDSIDDADAAE--S-VGGRAVLYTGGF 188
                    89999**********************99988776..3.345899999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1548.92
//
Query:       KIR62884.1  [L=431]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-40  138.0  25.4    2.9e-40  138.0  25.4    1.8  2  Sensor           Putative sensor
    1.9e-12   47.5   5.0    1.9e-12   47.5   5.0    2.2  3  HisKA_3          Histidine kinase
    0.00029   20.8   0.1    0.00074   19.5   0.1    1.7  1  HATPase_c_2      Histidine kinase-like ATPase domain
     0.0022   18.5   0.0     0.0063   17.0   0.0    1.9  1  HATPase_c        Histidine kinase-, DNA gyrase B-, and HSP90-
  ------ inclusion threshold ------
        3.1    8.1   8.7         11    6.4   1.0    2.6  2  VirB3            Type IV secretory pathway, VirB3-like protei


Domain annotation for each model (and alignments):
>> Sensor  Putative sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0  25.4   8.2e-44   2.9e-40       1     162 []      26     211 ..      26     211 .. 0.94
   2 ?   -2.8   0.7       1.6   5.6e+03      76      79 ..     252     255 ..     218     296 .. 0.55

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 8.2e-44
      Sensor   1 YlllglplgvaafvllvtglslglgllvllvGlplLalalllarglaaveRrrarlllglpvprph.rapep.pgllarlrallrdpatwrdllylllh 97 
                 Y+llg+pl+va fv+lv+gl+lg+gl+v+++Glp+La++l++arg+a+veR r++++lg++  rp+ r++e+ +g ++r+  ++ d ++w dl + +l 
  KIR62884.1  26 YVLLGFPLAVAGFVVLVAGLALGVGLVVTVIGLPVLAATLYAARGFADVERLRLTAVLGQDRVRPEyRRAEAgAGAWRRILVPIGDVQSWLDLTHGILN 124
                 9****************************************************************9999988*************************** PP

      Sensor  98 fplglvlfvvavvllalalalltaPlw......................tlpeallvavlGlllllvllwvvrglarlqallaraLL 162
                 ++++lv+fvv+v+++a al++ ++ ++                      + +++ + +++Gl++l++l+ vvrg+arl+a +araLL
  KIR62884.1 125 LVVALVTFVVTVTWWAAALVGTLYSVYdwalphppddqplsellglgesAAARIGVNTAAGLFFLVTLPLVVRGCARLKAGFARALL 211
                 **************************76677777777777666666666489**********************************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.6
      Sensor  76 arlr 79 
                 +rl+
  KIR62884.1 252 QRLV 255
                 3333 PP

>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.5   1.2e+04      50      64 ..     211     225 ..     204     229 .. 0.71
   2 !   47.5   5.0   5.4e-16   1.9e-12       3      66 ..     240     303 ..     239     305 .. 0.96
   3 ?   -3.3   0.0       3.7   1.3e+04      14      31 ..     396     413 ..     396     420 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHHHHT CS
     HisKA_3  50 realqevRrllhnLr 64 
                  + ++e+R  ++ L 
  KIR62884.1 211 LTGVAEMRSRITVLE 225
                 556788888888776 PP

  == domain 2  score: 47.5 bits;  conditional E-value: 5.4e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH CS
     HisKA_3   3 ariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLrpa 66 
                 +r+ R++HD+ +q+L+ +++ l+ a+++l++dpe+a ++l+e+ ++ r++l+e+R+l++ + p+
  KIR62884.1 240 RRLERDIHDGPQQRLVRLAMDLSRARHQLADDPEAAGRTLDEAVAQTRDTLAELRALSRGIAPP 303
                 69*********************************************************99886 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHHHHHT CS
     HisKA_3  14 gqsLsaiklqlelakrll 31 
                 g+ L++i+ ++ +a ++l
  KIR62884.1 396 GHGLTGIADRVRAAGGRL 413
                 688999988888887766 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   2.1e-07   0.00074      34      80 ..     350     393 ..     337     412 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.1e-07
  HATPase_c_2  34 laveEactNavehayleapegpvevrlesdeealtvevaDsGpg.fdp 80 
                  ++v+Ea+tN+ +h        + +v++++++++l+v vaD+G+g   +
   KIR62884.1 350 FVVAEALTNVAKHSGA----TECRVEVTRADDRLVVAVADDGHGgAHL 393
                  78************98....77889999***************94444 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.8e-06    0.0063       7      48 ..     349     389 ..     343     431 .] 0.91

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSS CS
   HATPase_c   7 rqiisnlvdNavkfatkageieveikaseddlvisveDnGiG 48 
                 + ++ ++++N +k+ + a+e++ve+++ +d+lv+ v D+G G
  KIR62884.1 349 YFVVAEALTNVAKH-SGATECRVEVTRADDRLVVAVADDGHG 389
                 6699**********.889********7669**********98 PP

>> VirB3  Type IV secretory pathway, VirB3-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   1.0    0.0029        11      15      70 ..      28      83 ..      25      95 .. 0.70
   2 ?    5.2   1.5    0.0069        25      24      52 ..     122     150 ..     116     159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0029
       VirB3 15 llGvplelvllnllvsvilflvglslwillllvplhlvlrliakrDpqmfrvlllr 70
                llG pl ++ +++lv++++  vgl + ++ l v++  +  +   +D  ++r+  + 
  KIR62884.1 28 LLGFPLAVAGFVVLVAGLALGVGLVVTVIGLPVLAATLYAARGFADVERLRLTAVL 83
                799**************999988888888444444444444456677777766555 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0069
       VirB3  24 llnllvsvilflvglslwillllvplhlv 52 
                 +lnl+v++++f+v++ +w++ l+ +l+ v
  KIR62884.1 122 ILNLVVALVTFVVTVTWWAAALVGTLYSV 150
                 78999**************9777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3163.19
//
Query:       KIR62885.1  [L=257]
Description: REX family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-20   74.1   0.1    2.4e-20   73.0   0.1    1.6  2  CoA_binding     CoA binding domain
    1.8e-18   66.3   0.0    2.9e-18   65.6   0.0    1.4  1  Put_DNA-bind_N  Putative DNA-binding protein N-terminus
     0.0035   18.1   0.1     0.0055   17.5   0.1    1.3  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
  ------ inclusion threshold ------
       0.13   12.6   0.0       0.26   11.7   0.0    1.5  1  Rrf2            Transcriptional regulator


Domain annotation for each model (and alignments):
>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         4   1.8e+04      29      43 ..      53      67 ..      49      76 .. 0.74
   2 !   73.0   0.1   5.5e-24   2.4e-20       2      95 ..      99     195 ..      98     196 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4
                 CEEEEEEC-TTTTTC CS
  CoA_binding 29 gikavfgvnprkvgt 43
                 g+ +++gvn  k+ +
   KIR62885.1 53 GLASAAGVNSAKLRK 67
                 667888888887765 PP

  == domain 2  score: 73.0 bits;  conditional E-value: 5.5e-24
                  TTEEEEEETTTSHHHHHH.HHHHHHHHECEEEEEEC-TTTTTCEETTEEEESCHHHHHHHC.T..TTEEEEES-HHHHHHHHHHHHHTT-SEEEEESS CS
  CoA_binding   2 kdtkviviGagglgiagl.yhfkeklkygikavfgvnprkvgtevlglpvyksvdeleekt.e..vdvavitvPaesaqeavdelveagikgiviite 95 
                  ++  v+++G+g+lg+a++ y+++  ++++i a+ + +p+ vg+e++gl v  +vdel+    e  + ++vi++Pa++aq+++d+lv+ g+  i+++++
   KIR62885.1  99 QRRAVALVGVGNLGHALAgYDGFASRGFRIAALLDADPGRVGEEINGLVVR-HVDELPRIAaEepIAIGVIATPARAAQAVADQLVAVGVTSILNFAP 195
                  56789**********************************************.*******998458*******************************98 PP

>> Put_DNA-bind_N  Putative DNA-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   6.6e-22   2.9e-18       2      49 .]      23      70 ..      22      70 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 6.6e-22
                    --HHHHHHHHHHHHHHHHHHHTT--EE-HHHHHHHCTS-HHHHHHHHH CS
  Put_DNA-bind_N  2 IPeatikRLplYlryLeelkeegveriSSteLaealgvtaaqvRKDLS 49
                    +Peat++RLp Ylr+L++l e+g e++SS+ La a+gv++a++RKDLS
      KIR62885.1 23 LPEATVARLPEYLRALHNLAESGHETVSSEGLASAAGVNSAKLRKDLS 70
                    7**********************************************8 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   1.2e-06    0.0055       3      90 ..     103     191 ..     101     209 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.2e-06
                   EEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-.EEE CS
  GFO_IDH_MocA   3 vaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaaleagk.hvl 90 
                   va++G+G++g   +     ++r+ +++alld d+ r  +  + ++v  +++l +++a++ i + ++atp++  +++a ++++ g+ ++l
    KIR62885.1 103 VALVGVGNLGHALAGYDGFASRGFRIAALLDADPGRVGEEINGLVVRHVDELPRIAAEEPIAIGVIATPARAAQAVADQLVAVGVtSIL 191
                   899******988865555555999***************9*****************999********************999985555 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.8e-05      0.26      11      53 ..      35      76 ..      29      93 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.8e-05
                HHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTT CS
        Rrf2 11 lhallyLakeeeeepvsseeiaerqnispsylekilakLrkag 53
                l+al  La+  +e+ vsse +a+  +++   l+k l++L   g
  KIR62885.1 35 LRALHNLAESGHET-VSSEGLASAAGVNSAKLRKDLSHLGSYG 76
                7999*****99987.*********************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1768.03
//
Query:       KIR62886.1  [L=447]
Description: glutamyl-tRNA reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-43  147.3   0.0    4.3e-43  146.6   0.0    1.4  1  GlutR_N          Glutamyl-tRNAGlu reductase, N-terminal domai
    3.5e-29  101.6   0.0    6.3e-29  100.8   0.0    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    4.5e-25   87.9   0.2    1.1e-24   86.7   0.1    1.7  2  GlutR_dimer      Glutamyl-tRNAGlu reductase, dimerisation dom
     0.0027   18.2   0.3      0.051   14.2   0.2    2.7  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
     0.0037   16.2   0.3     0.0061   15.5   0.3    1.3  1  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil
  ------ inclusion threshold ------
      0.016   14.7   1.9      0.019   14.4   0.8    1.6  2  Glu_dehyd_C      Glucose dehydrogenase C-terminus
      0.042   14.3   0.2       0.11   12.9   0.2    1.7  1  NAD_binding_7    Putative NAD(P)-binding
      0.072   13.7   3.8        9.5    6.8   0.2    2.8  2  DnaG_DnaB_bind   DNA primase DnaG DnaB-binding
       0.23   11.1   0.9       0.44   10.2   0.9    1.4  1  ApbA             Ketopantoate reductase PanE/ApbA
       0.72    9.2   3.1       0.98    8.7   1.5    1.9  2  ThiF             ThiF family


Domain annotation for each model (and alignments):
>> GlutR_N  Glutamyl-tRNAGlu reductase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.6   0.0   2.4e-46   4.3e-43       1     146 []       6     156 ..       6     156 .. 0.96

  Alignments for each domain:
  == domain 1  score: 146.6 bits;  conditional E-value: 2.4e-46
     GlutR_N   1 iginhktapvelreklafseeelkellkel.ee.kvkeaviLsTCNRtEiylsaeeeeeaseellellaevs...leelkeklyvlegeeavrHlfrVa 94 
                 +g++++tapv+++e+la+  ++l+++l++l ++  v+eav++sTCNR+E+y++++  +    ++ ++lae++    ++l+++lyv+ + +av H+frVa
  KIR62886.1   6 VGASYRTAPVATLEQLAVGPADLTRTLDHLlAQpYVSEAVLVSTCNRVEVYAAVSGFHGGLGDICAVLAEQAgtlPASLANHLYVHYDAAAVDHVFRVA 104
                 799**************************98777899***************9*9*************999677899999******************* PP

     GlutR_N  95 sGLdSlvlGEdqIlgQvkeayelakeagtlgkvLerlfqkaikvakrvrtet 146
                 +GLdS+v+GE qIlgQ+++ay+ a+ a ++g+ L++l+q+a++v+kr++ et
  KIR62886.1 105 AGLDSMVVGEAQILGQLRDAYHWASGADSAGRLLHELMQQALRVGKRAHAET 156
                 *************************************************998 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0   3.5e-32   6.3e-29       6     137 ..     176     308 ..     171     309 .. 0.93

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 3.5e-32
                   HHS...TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS-SB-HHHHHCCHHH CS
  Shikimate_DH   6 kle.slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisataseepilekeeveealkk 101
                    l+  l+++ +l++GaG m+ l +  L++ g+  ++v+NR  +ra +lae++++    a ++  l+++l+ +d+v++ata++ep+l++e v++al++
    KIR62886.1 176 HLDgALAGRPALVVGAGAMGALGVATLSRLGAGPLTVTNRGADRAVRLAESYGAS---AAPMAGLTDVLSTVDIVVAATAATEPVLTREVVTRALAD 269
                   4544789999******************************************888...**************************************9 PP

                   .S.....EEEEE--SS-SB-TTGGGSTTCCCEEHHHHHH CS
  Shikimate_DH 102 rk...kplllvDiavPRdvepevaeledvrlytvDdLke 137
                   r+    pl+l+D+avPRdvep va l +v+++++D + +
    KIR62886.1 270 RDpdrGPLVLLDLAVPRDVEPGVAGLPGVEVIDIDRMAA 308
                   99876788***************************8876 PP

>> GlutR_dimer  Glutamyl-tRNAGlu reductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         5     9e+03      69      78 ..     137     146 ..     131     170 .. 0.56
   2 !   86.7   0.1     6e-28   1.1e-24       2      97 .]     322     420 ..     321     420 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5
                  HHHHHHHHHH CS
  GlutR_dimer  69 llheptarLk 78 
                  llhe +++  
   KIR62886.1 137 LLHELMQQAL 146
                  4444444332 PP

  == domain 2  score: 86.7 bits;  conditional E-value: 6e-28
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-S...--------TTHHHHHHHHHHHHHHHHHHSS..-TTTTHHHHHHHHH.. CS
  GlutR_dimer   2 AeaiIeeeveefeawlkslevvptIkalrekaeeireeeleralkkla.ldgedreelekltrslvnkllheptarLkea..edeeeellealrrlFn 96 
                  +e+i+ +eve+f++wl+  +v+pt++alr +ae++++ el+r+ ++ + l++++r+e+ + ++++v++llh+pt+r++++  e  +++++++lr+lF+
   KIR62886.1 322 VERIVTAEVESFLTWLRGADVAPTVAALRGRAEDVVATELRRLAQRRPdLSDDQRAEVARTVHRVVQRLLHQPTVRVRQLaaEPGGDQYAALLRELFD 419
                  89******************************************************************************8777777**********9 PP

                  . CS
  GlutR_dimer  97 l 97 
                  l
   KIR62886.1 420 L 420
                  7 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.46   8.3e+02      67      96 ..      21      51 ..      16      52 .. 0.90
   2 !   14.2   0.2   2.8e-05     0.051       4      69 ..     188     251 ..     186     272 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.46
                   E-S-HHHHHHHHHHC.GHHHHTTSEEEEESS CS
  F420_oxidored 67 lavkpedveevlsel.akdalkgklvisvla 96
                   lav p+d++ +l+ l a+   ++ +++s+++
     KIR62886.1 21 LAVGPADLTRTLDHLlAQPYVSEAVLVSTCN 51
                   899**********997888899999**9998 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.8e-05
                    EETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECEC.HHHHHHH-SEEEE-S CS
  F420_oxidored   4 iiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavd.neeaaeeadvvvlav 69 
                    ++GaG mg+  +  l++ g  +  ++ +++r  ++a  lae++g+++ +++   ++++  d+vv a 
     KIR62886.1 188 VVGAGAMGALGVATLSRLG--AGPLT-VTNRGADRAVRLAESYGASAAPMAgLTDVLSTVDIVVAAT 251
                    57*****************..66666.45***************99988762578888999999885 PP

>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   3.4e-06    0.0061     134     214 ..     188     264 ..     166     266 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.4e-06
                      EE--SHHHHHHHHHHCCCS--SEEEEE-SSHHHHHHHHHHCCS.CTT-EEECSCHHHHTTSSEEEE----SS-SB-GGGS- CS
  OCD_Mu_crystall 134 iiGaGvqaetqlealkavldikevriydrdeeaaekfaenlqefefevsackseeeavegadivvtvTaakapilkaewvk 214
                      ++GaG++  + +  l+++ +   +    +++++a+++++ ++ ++      +   ++ + +divv++Taa++p+l+ e v 
       KIR62886.1 188 VVGAGAMGALGVATLSRL-GAGPL---TVTNRGADRAVRLAESYGASAAPMAGLTDVLSTVDIVVAATAATEPVLTREVVT 264
                      567777777766666554.33333...467889999999999999999999999***********************9985 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.3   5.8e+03     166     201 ..      91     127 ..      86     130 .. 0.66
   2 ?   14.4   0.8   1.1e-05     0.019      11     114 ..     164     257 ..     157     270 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.3
  Glu_dehyd_C 166 hfea.avdtLaalpeslldelvtkvvdldeleeAfed 201
                  h++a avd++ ++ + l + +v +   l +l++A+++
   KIR62886.1  91 HYDAaAVDHVFRVAAGLDSMVVGEAQILGQLRDAYHW 127
                  6654156777777777666667777777788888876 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.1e-05
  Glu_dehyd_C  11 siveKaielaeasrsafewepesalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYvdsretpvdeipeaseemdlvvEaT 108
                  s+v  a++la+          + alv+GaG++G L +a+l+    g   ++v++r    d++++l e+ Ga       +p+  ++++ + +d+vv aT
   KIR62886.1 164 SVVSAALDLAAGH-LDGALAGRPALVVGAGAMGALGVATLSR--LGAGPLTVTNR--GADRAVRLAESYGAS-----AAPMAGLTDVLSTVDIVVAAT 251
                  7777788877543.344566778*****************85..67777777776..668999999988885.....4689999999*********** PP

  Glu_dehyd_C 109 Gsakha 114
                   +++ +
   KIR62886.1 252 AATEPV 257
                  988765 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   6.4e-05      0.11       5      72 ..     181     254 ..     180     270 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.4e-05
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvklaeee.........lekdlegadlviaatddr 72 
                    l g+  lvvG+G ++a  v +l + ga    v+++    +++ v+lae++         l + l+ +d+v+aat  +
     KIR62886.1 181 LAGRPALVVGAGAMGALGVATLSRLGAGPLTVTNR---GADRAVRLAESYgasaapmagLTDVLSTVDIVVAATAAT 254
                    67899**********************98888888...7888999988875555555545777999*******9765 PP

>> DnaG_DnaB_bind  DNA primase DnaG DnaB-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.2    0.0053       9.5      48      80 ..     110     152 ..      75     178 .. 0.56
   2 ?    6.8   0.3    0.0053       9.5      14      74 ..     364     422 ..     363     436 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0053
  DnaG_DnaB_bind  48 l..ntaaLlerlrgtp........eeallaeLaveelqveeee 80 
                     +  + a++l++lr++          ++ll+eL+++ l+v + +
      KIR62886.1 110 MvvGEAQILGQLRDAYhwasgadsAGRLLHELMQQALRVGKRA 152
                     3334445555555533344555555555555555555554443 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0053
  DnaG_DnaB_bind  14 lagelpdalaleafedpglallreliealaaepelntaaLlerlrgtpeeallaeLaveel 74 
                     la++ pd ++ +    + ++ +++++++l ++p +   +L +   g +++all eL   ++
      KIR62886.1 364 LAQRRPDLSDDQ--RAEVARTVHRVVQRLLHQPTVRVRQLAAEPGGDQYAALLRELFDLQV 422
                     788888888888..99999**********999***********************986655 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.9   0.00024      0.44       2      34 ..     187     221 ..     186     231 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00024
                 EEES-SHHHHHHHHHHHH.HTHCEEEE-SCH.HHH CS
        ApbA   2 ailGaGaiGsllaakLak.agadvtlilrsr.rle 34 
                 +++GaGa+G l  a+L++  + + t+ +r++ r+ 
  KIR62886.1 187 LVVGAGAMGALGVATLSRlGAGPLTVTNRGAdRAV 221
                 69****************55556777777776654 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.5   0.00055      0.98      15      48 ..     180     213 ..     163     217 .. 0.85
   2 ?   -1.4   0.0      0.66   1.2e+03     103     120 ..     237     254 ..     225     271 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00055
                 HHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  15 kLrdskvllvGaGglGsellknLalsGvgkltlv 48 
                 +L+    l+vGaG+ G   + +L ++G g lt++
  KIR62886.1 180 ALAGRPALVVGAGAMGALGVATLSRLGAGPLTVT 213
                 56667789************************97 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.66
                 -HHHHTT-SEEEEESSSH CS
                 xxxxxxxxxxxxxxxxxx RF
        ThiF 103 leellesvDlVvdalDni 120
                 l ++l++vD+Vv a+   
  KIR62886.1 237 LTDVLSTVDIVVAATAAT 254
                 45889999***9998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3204.94
//
Query:       KIR62887.1  [L=322]
Description: porphobilinogen deaminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-67  225.0   0.1    8.1e-67  224.7   0.1    1.1  1  Porphobil_deam   Porphobilinogen deaminase, dipyromethane cof
    9.1e-21   74.0   0.8    1.7e-20   73.2   0.3    1.7  2  Porphobil_deamC  Porphobilinogen deaminase, C-terminal domain


Domain annotation for each model (and alignments):
>> Porphobil_deam  Porphobilinogen deaminase, dipyromethane cofactor binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.7   0.1   9.1e-71   8.1e-67       1     202 [.       5     210 ..       5     212 .. 0.94

  Alignments for each domain:
  == domain 1  score: 224.7 bits;  conditional E-value: 9.1e-71
  Porphobil_deam   1 irigtRkSkLAlaqaelvaeaLke..eeeveivtiktkGDkildkpLakiggkglFtkeleeaLlegeidlaVhSlKDlptelpeglelaavlkr 93 
                     +r+gtR+S+LA+aq+ +va+aL+e   +eve+v++ t GD+ +  p++++ g g+F+++l++aL +++idlaVhS+KDlpt+  +gl++aav++r
      KIR62887.1   5 LRLGTRGSTLAMAQSGHVAAALTEatGREVELVEVVTAGDRSS-APVHRL-GVGVFVSALRDALTARTIDLAVHSYKDLPTAAAPGLHVAAVPPR 97 
                     799*******************66546669************9.8****9.69****************************************** PP

  Porphobil_deam  94 edprDvlvvks..sleelpegavvgTsSlRRkaqlkklrpdlevkdlRGnvdtRlrkl..degeydaiiLAaAGLkRlgleerisevlspeellp 184
                     +dprD+lv+k   +l+elp+gavvgT++lRR aql++l  +lev+++RGn+dtRl+++   ++++da++LA+AGL R+g ++ i+e+l+p  +lp
      KIR62887.1  98 QDPRDALVAKGglTLAELPPGAVVGTGALRRIAQLHALGLQLEVTPIRGNIDTRLARVlgPDADLDAVVLARAGLARIGRTDVITETLDPMLMLP 192
                     ********765889*******************************************9544458***************99999999******** PP

  Porphobil_deam 185 avgQGalavevrkedeel 202
                     a++QGalave+r++d++l
      KIR62887.1 193 APAQGALAVECRADDTDL 210
                     ***************986 PP

>> Porphobil_deamC  Porphobilinogen deaminase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         2   1.8e+04      24      46 ..      25      46 ..      24      50 .. 0.67
   2 !   73.2   0.3   1.9e-24   1.7e-20       3      74 ..     225     297 ..     223     298 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2
                     EEEEEETTE.EEEEEEEE-TTS. CS
  Porphobil_deamC 24 vyaeveaneelkLkglvlsldgl 46
                     + +e+++ e ++L  +v++ d++
       KIR62887.1 25 ALTEATGRE-VELVEVVTAGDRS 46
                     556655555.8888888877775 PP

  == domain 2  score: 73.2 bits;  conditional E-value: 1.9e-24
                      HHHHHHHHHHHTT--TTSSEEEEEEEE.TTE....EEEEEEEE-TTS..S-EEEEEEEE-GGGHHHHHHHHHHHHH CS
  Porphobil_deamC   3 evlaERallkeLeGGCsvPiGvyaeve.ane...elkLkglvlsldglksaveeaeakgeleeaeelGkklaeell 74 
                      +v+aERall++Le+GCs+P+++yae++ + +   e++L+g+v+s+dg++    + +++g +++a+e+Gk la+ell
       KIR62887.1 225 AVTAERALLATLEAGCSAPVAAYAELAeG-DagdEIYLRGAVISPDGTR--DLRLSRTGTPADAAEIGKALAAELL 297
                      79************************962.44669************98..9999999999*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2253.29
//
Query:       KIR62888.1  [L=526]
Description: uroporphyrin-III methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-66  222.6   1.0      6e-66  222.1   0.4    1.6  2  HEM4          Uroporphyrinogen-III synthase HemD
    5.7e-30  104.9   7.2    1.2e-29  103.8   7.2    1.5  1  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.046   13.8   0.0    2.1  1  B12-binding   B12 binding domain
      0.045   14.4   0.1          2    9.1   0.0    2.8  3  Creatinase_N  Creatinase/Prolidase N-terminal domain


Domain annotation for each model (and alignments):
>> HEM4  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.77   3.4e+03     147     188 ..      38      91 ..      35     108 .. 0.66
   2 !  222.1   0.4   1.3e-69     6e-66       3     232 .]     261     491 ..     259     491 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.77
                 -SEEEEE-HHHHHHHHHHHHTT--............SEEEESSHHHHHHHHHH- CS
        HEM4 147 evYetvpaeeepeelkealkagev............davvftSpstvrnllell 188
                 +vY++ ++e++ + ++++ k+++              +++ +  s++++++ ++
  KIR62888.1  38 VVYDRGVPESLLDAVRAQAKSDAQfspaegvpgdvaKVLISAARSGLNAVHLVA 91 
                 688898888888888888877555555666666655555555555555555555 PP

  == domain 2  score: 222.1 bits;  conditional E-value: 1.3e-69
                 HHHHHHHTTEEEEE---EECCECCHHHHHHHHHT.....--SEEEE--HHHHHHHHHHHHHTT---HHHHHCSEEESSHHHHHHHHHTT---SEE-..S CS
        HEM4   3 laealearGaeplelPlieiepaedraelraalddleagkydwliftSanavealfealkreeedvkalaslkvaavGpaTaraLeelglrvdlvpsee 101
                 ++++l+a+Ga+p+e+P+i +ep++ +a++++a++ l +g+y w++ftS+nav+a+ e+  ++++d ++   +k+a++G+aTa+a++++g++++lvp+ e
  KIR62888.1 261 MSARLRAYGAIPCEVPTIAVEPPRTPAQMERAVKGLVDGRYAWVVFTSVNAVRAVWEKFAEHGLDARHFGGVKIACIGEATADAVRAFGIQPELVPAGE 359
                 899************************************************************************************************ PP

                 SSHHHHGGGS-....---E.EEEEE-SS.S--HHHHHHHHHTTEEEEEE-SEEEEE-HHHHHHHHHHHHTT--SEEEESSHHHHHHHHHH-S-HHHHHC CS
        HEM4 102 gtaegLaeelae...slag.krvlllrgeiarddlaegLeergaevdevevYetvpaeeepeelkealkagevdavvftSpstvrnllellkdegdelk 196
                 +++egL++e+ +    l + +rvll+r++ia ++la+gL erg evd+v++Y+tv+a + p+e+++a+k+g +dav+ftS+stvrnl+ ++++   ++ 
  KIR62888.1 360 QSSEGLLAEFSPhdeILDPvGRVLLPRADIATETLAAGLTERGWEVDDVTAYRTVRAAPPPAEIRDAIKSGGFDAVLFTSSSTVRNLVGIAGK---PHA 455
                 **********998875556699**********************************************************************8...9** PP

                 TSEEEEESHHHHHHHHHTT---SEEETS--HHHHHH CS
        HEM4 197 evkvaaiGptTaealkklglkvdvvaeeptaeglva 232
                 ++ va+iGp Tae++ ++gl+vdv+++++++ +lv+
  KIR62888.1 456 RTVVAVIGPKTAETATEFGLRVDVQPQHASVPDLVE 491
                 ********************************9996 PP

>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   7.2   2.7e-33   1.2e-29       1     210 [.      10     209 ..      10     211 .. 0.92

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 2.7e-33
  TP_methylase   1 klylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeeleleapmgkekepleeayeeiaealaealragkdVvllvsGDPlvygtgs 97 
                   ++ +VG+GpGdp llT rA++al +ad v++d+  ++e+lld+++     +a+  ++ +p+e++  ++a+ l+ a+r+g ++v+lv+GDP+ ++++ 
    KIR62888.1  10 RIAFVGAGPGDPGLLTRRAHDALVDADQVVYDR-GVPESLLDAVRA----QAKSDAQFSPAEGVPGDVAKVLISAARSGLNAVHLVAGDPFGHDSVV 101
                   589***************************999.9*******9986....6888888999************************************* PP

  TP_methylase  98 elvealrareagieveviPGvsslqaaaarlgiplteggevlsvllpglakeeereleallangdtlvllkaprklaelaelLkea.lyddttpvav 193
                   ++v+a+++     ++ev+PGv  +  +a+++g+pl   +++ +v   +  + + + l+a++ +g   ++++a++ la +++ L +a +++ t  v v
    KIR62888.1 102 KEVQAVAR--TAAHFEVVPGVGQAEGVATYAGVPLPGVRTAADVE--DVTTLDFDALAAAVGRGSLALAVDAGD-LAAIRDGLHAAgVDGAT-GVGV 192
                   ********..7789******************************9..445577788888888777777787777.***********888866.**** PP

  TP_methylase 194 veragtedervvrgtle 210
                   + +++ e + ++++t+ 
    KIR62888.1 193 TGDGTGETQYTTTSTVD 209
                   *********99999875 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     1e-05     0.046      14      62 ..     388     442 ..     379     479 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1e-05
  B12-binding  14 plGlavlaaalrdagfeVqllganven......edivaairaekpdvvglSallt 62 
                  +++   laa l ++g+eV+++ a  ++      ++i +ai++  +d+v++++ +t
   KIR62888.1 388 DIATETLAAGLTERGWEVDDVTAYRTVraapppAEIRDAIKSGGFDAVLFTSSST 442
                  5677889************99666666666788*****************88443 PP

>> Creatinase_N  Creatinase/Prolidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.8   1.3e+04      68      89 ..      34      56 ..      24      68 .. 0.53
   2 ?    2.1   0.0     0.063   2.8e+02      25     132 .]     200     315 ..     172     315 .. 0.68
   3 ?    9.1   0.0   0.00044         2       5      47 ..     423     468 ..     421     507 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.8
                  TSEEEEEST.HSSHHHHHHHHHH CS
  Creatinase_N 68 veevveydd.pvealadllkell 89
                  + + v+yd+ + e+l d+++ ++
    KIR62888.1 34 DADQVVYDRgVPESLLDAVRAQA 56
                  44444454455555555555443 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.063
                   HHHHHSS...-SSSEEEEEEESSCEEEEEECTTHHHHHHHH...TTSEEEEEST...HSSHHHHHHHHHHHHT.......-EEEE-TTSSBHHHHHH CS
  Creatinase_N  25 lrYltGfatetgsrglalvvtadgalllvdalryteaaees..atveevveydd...pvealadllkellese.......krvgveldaltvafyea 109
                    +Y t     t  +++a+ +   g++ l+  ++   ++ ++  ++   +++++     +++ a +++ +l +         +++ve+  +++++ +a
    KIR62888.1 200 TQYTTTS---TVDSFVAAALGFTGRVVLTV-GEGVGQRDKMswWENRPLYGWKVlvpRTKEQAGVMSARLRAYgaipcevPTIAVEPPRTPAQMERA 292
                   5677777...77788888788888889999.899999999977555556666656663444444444443333444455699999999866666666 PP

                   HHHHCTTS.EEEETHHHHHHHHSC CS
  Creatinase_N 110 lkealpda.elvdaselieelRvv 132
                   +k  +++   +v ++  ++++R+v
    KIR62888.1 293 VKGLVDGRyAWVVFTS-VNAVRAV 315
                   6666666668998887.8888876 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00044
                   HHHHHHHTT-SEEEEECCHHHHHHHSS...-SSSEEEEEE...ESS CS
  Creatinase_N   5 lralmeekgldallvtspenlrYltGfatetgsrglalvv...tad 47 
                   +r++++  g da+l ts++ +r l G a +++ r++++v+   ta+
    KIR62888.1 423 IRDAIKSGGFDAVLFTSSSTVRNLVGIAGKPHARTVVAVIgpkTAE 468
                   79999*********************************99444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3763.17
//
Query:       KIR62889.1  [L=327]
Description: delta-aminolevulinic acid dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-135  450.7   0.1   2.9e-135  450.5   0.1    1.0  1  ALAD      Delta-aminolevulinic acid dehydratase


Domain annotation for each model (and alignments):
>> ALAD  Delta-aminolevulinic acid dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  450.5   0.1  1.6e-139  2.9e-135       2     316 ..       6     321 ..       5     322 .. 0.98

  Alignments for each domain:
  == domain 1  score: 450.5 bits;  conditional E-value: 1.6e-139
                 --GGGGGSSHHHHHHC-S----GGGEEEEEEEESS-SS-EE-TTSTT-EEEEGGGHHHHHHHHHHTT--EEEEEEE-SS-BSS-GGGGSTTSHHHHHHH CS
        ALAD   2 krlrrlrksealrelvretrlsasdlilplfvkegeeekeeiksmpgvyrlsvdelvkeveelvklgikavllFgvpeekdeegsealnedglvqrair 100
                  r+rrlr+++a+r+lv+etr+++++l++p+fvkeg +e+++i+s+pgv ++s d+l k+++e+v++g+  ++lFgvpe++d++gs  +++ g+++ ai 
  KIR62889.1   6 IRPRRLRRNAAVRRLVSETRVDPAELVVPMFVKEGLTEPRQIASLPGVLQHSRDSLRKAAAEAVQAGVGGIMLFGVPERRDPTGSGGIDPGGILNVAIA 104
                 59************************************************************************************************* PP

                 HHHHH-.TTSEEEEEE-STTTBSS-SSSEEE.SS.EEHHHHHHHHHHHHHHHHHCT-SEEEE-S--TTHHHHHHHHHHHTT-TT-EEB---EEB--CGG CS
        ALAD 101 aikeev.pelvvitDvclceytshGhcgile.ekevdndetlellakvavsqaeaGadivapSdmmDgrvaaireaLdeagfeevailsYsaKyaSafY 197
                  + +ev + +vv++D+cl+e+tshGhcg+l+ ++evdnd+tl+++a++av+qa aG+ +v+pS+mmDg+v+++r+aLd+ag+++va+l+Y+aKyaSafY
  KIR62889.1 105 DVVAEVgDATVVMSDLCLDEFTSHGHCGLLTpDGEVDNDATLAAYAEMAVAQAAAGVGVVGPSGMMDGQVGVVRRALDAAGHTDVAVLAYAAKYASAFY 203
                 *****9566999******************63667**************************************************************** PP

                 HHHHHHHT---S.S--TTTSB-TT-HHHHHHHHHHHHHTT-SBEEEES-TTGHHHHHHHHTT-SS-EEEEE-HHHHHHHHHHHHTTSS-HHHHHHHHHH CS
        ALAD 198 gPFrdaaesapsfgdrktYqmdpansrealreveldleeGADivmvKPalaylDiirevkeefdlpvaayqvSGEYamikaaaengwldekkvvlEsll 296
                 gPFrda+es    gdr+tYq+dpan re+lrev+ld++eGADivmvKPal+ylD++++v+ ++d+pvaayqvSGEYam++aaa+ngw+d+++v+lE+l+
  KIR62889.1 204 GPFRDAVESCL-DGDRRTYQQDPANLRESLREVALDVAEGADIVMVKPALPYLDVVAAVRAAVDVPVAAYQVSGEYAMVEAAAANGWIDRERVMLETLT 301
                 **********9.6************************************************************************************** PP

                 HHHHTT-SEEEETTHHHHHH CS
        ALAD 297 sikRAGadliltYfakevak 316
                 si+RAGa++iltY+a e+a+
  KIR62889.1 302 SIRRAGAQIILTYWAVEAAR 321
                 *****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2434.57
//
Query:       KIR62890.1  [L=1091]
Description: endonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-17   63.1   2.5    2.5e-16   60.0   0.3    2.6  2  LTD            Lamin Tail Domain
    0.00014   21.5   4.0     0.0029   17.1   4.0    2.5  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
     0.0012   19.0   0.0     0.0029   17.7   0.0    1.6  1  Calx-beta      Calx-beta domain
  ------ inclusion threshold ------
       0.07   13.5   0.2        0.4   11.0   0.2    2.2  2  HYR            HYR domain


Domain annotation for each model (and alignments):
>> LTD  Lamin Tail Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.3   5.6e-20   2.5e-16       2     110 ..      29     138 ..      28     140 .. 0.88
   2 ?    2.3   0.1     0.046   2.1e+02      39     101 ..     257     348 ..     249     359 .. 0.62

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 5.6e-20
         LTD   2 aaaagdvvIsevmedgagnnanefvelyNtsskavdLs..gwkledasgeytfpngt.........gtlaageyvvvwsgsgttsasngskasssavwn 89 
                 +aa+ d++Ise++e++ +nn  +++elyN ++++vdL+  g++l  + ++      +         gt+aag+++v++++s++ +  +++++ ++a++ 
  KIR62890.1  29 SAAPTDLFISEYVEGS-SNN--KAIELYNGTGAPVDLTagGYQLLLYFNG------NttattlaltGTVAAGDTFVFAAASAAPAILAQVDQTTTASLF 118
                 78999*********99.666..**************************55......33455555669*************9999999998888999*** PP

         LTD  90 nggdavaLydasgevvdsvgy 110
                 ng+da++L++   +vvds+g+
  KIR62890.1 119 NGDDAIVLRR-GTTVVDSIGQ 138
                 ********87.8888***997 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.046
         LTD  39 sgwkledasge...ytfpngtgtlaageyvvvwsgsgtt..........................sasngskasssavwnn...............ggd 93 
                 +g++ +da g+   +t+  +   laag+y v  ++++++                          +                              +g 
  KIR62890.1 257 TGFTPADAVGGtarATVATSA-DLAAGAYTVTMTATDADgatatcalavtvtreltvgevqgpttD--------------AesgpadrsplapasgNGT 340
                 677777888778776676776.9***********98877777777666666665555555444331..............0222222233333333666 PP

         LTD  94 avaLydas 101
                 + +Lyd  
  KIR62890.1 341 SSTLYDVR 348
                 66677754 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   4.0   6.6e-07    0.0029       1     210 [.     610     942 ..     610     971 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.6e-07
                    EEEEESTG.............................CHHHHTHHHHHHHHHHHHHHC..TTSEEEEEEEBSCTCHHHHHHHHH..........TT CS
                    xxxxxxxx.............................xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx..........xx RF
  Exo_endo_phos   1 ltwNvngq.............................aspalgssrrsdrladlltay..daDvlgLQEvdddelsriplllal..........gg 55 
                    +t+Nv +                              ++++++   + ++lad +++    +D++++QE+ d++   +                  
     KIR62890.1 610 ATYNVENLydyrddpfdgcdftgnagctgvsppfdyvPASEADYREHLTALADQIRTDlhAPDLILVQEAEDQDICSV-----SggalvcgdtnD- 699
                    57777777777777777777777777778888888885555555566777888888778777****999666653333.....122233433330. PP

                    CEEEEECCH...........................ECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE......... CS
                    xxxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......... RF
  Exo_endo_phos  56 flgasstsp...........................tgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlni......... 115
                                                        + g+ ++g   + l+r    sl+  t  +    +a++   + a+   +  +         
     KIR62890.1 700 --------AdgapdtlqelalavaaaggpayaaaydRTGADARGITAGFLYRTDRLSLPEATAADPLLGSAPTVPYRSAGLPSNADVqnpkalnav 787
                    ........2445566666666666666666666666566666666667777777777766655555555555555555555555555888889999 PP

                    .................................................CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGB CS
                    .................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 116 .................................................ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsddds 162
                                                                      +  ++  + ++ +++  l  ++ nad++ +v+  GD+N+ p+ dd 
     KIR62890.1 788 lpadtdtstgkdgnnvytrapqlgrfwvkaapgssegyhlwalsnhfssGPDSRVGQRTEQARYGAALVTAIHNADPNSRVVYGGDLNVFPRPDDP 883
                    99999999999999999999999999999999***************8888888899999999999***********************9999988 PP

                    SCGHHHHHHCTTTHH...........SSCESCETTTTTTTTTTTEB-BEEEEEECHHHC CS
                    xxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 163 rvlrtrglalapapv...........glyllgggptptyvtraggsrlDrilaspalal 210
                      + + +   ++ +            +l+   ++ +++y  ++  ++lD+ ++++al+ 
     KIR62890.1 884 IATGADPTPSDQLAAlydaglhslwdDLVAEVPSSAYSYSFQGQAQTLDHLFVNDALRD 942
                    8888777777777734555677889*****************************85543 PP

>> Calx-beta  Calx-beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   6.4e-07    0.0029      38      97 ..    1009    1068 ..     982    1071 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 6.4e-07
                  -..SS-EEEEEEEEESSS-TTTSB---EEEEEE-TT--EEEEEEE----TTTT--EEEEE CS
   Calx-beta   38 gelerevvVsyrteDgtAtagsDYeavegeLvFkpdetekevnvtivdDdvleedenFfv 97  
                    l++   +   t   tA+agsDYe+  g  v+ +++t  ++ vt+  D   e de++ +
  KIR62890.1 1009 RPLSQPALICAATYGTTAQAGSDYEPYVGCKVLAAGQTSLTFAVTVRGDRKREADEKVNL 1068
                  4467777788889999****************************************9876 PP

>> HYR  HYR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2     9e-05       0.4      51      81 .]     276     306 ..     252     306 .. 0.84
   2 ?   -1.3   0.0      0.65   2.9e+03      50      69 ..     531     550 ..     513     554 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9e-05
         HYR  51 GdsFpvGsttVtyvaeDesgneasCkFtVtv 81 
                  + +  G  tVt +a+D+ g +a+C   Vtv
  KIR62890.1 276 SADLAAGAYTVTMTATDADGATATCALAVTV 306
                 467889***********************98 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.65
         HYR  50 pGdsFpvGsttVtyvaeDes 69 
                 +G+    G+  V+++a D++
  KIR62890.1 531 NGQRIMLGTMGVKATAGDNA 550
                 7999999***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1091 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 7482.85
//
Query:       KIR62891.1  [L=336]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-09   37.1   0.1    3.6e-08   33.3   0.0    2.2  2  FR47             FR47-like protein
    7.1e-09   35.9   0.0    5.5e-08   33.1   0.0    2.0  2  Acetyltransf_1   Acetyltransferase (GNAT) family
    6.5e-08   32.9   0.1    5.9e-07   29.8   0.0    2.1  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.8e-06   27.9   0.0      2e-05   24.5   0.0    2.0  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.017   15.3   0.3        2.4    8.4   0.0    2.4  2  Acetyltransf_CG  GCN5-related N-acetyl-transferase
      0.027   14.6   1.0        0.4   10.8   0.0    3.0  3  Acetyltransf_9   Acetyltransferase (GNAT) domain
      0.097   12.8   0.5       0.28   11.4   0.1    1.9  2  Acetyltransf_6   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.4e-11   3.6e-08      26      80 ..      88     142 ..      75     148 .. 0.88
   2 ?    1.1   0.0      0.16     4e+02      29      80 ..     263     317 ..     259     322 .. 0.72

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.4e-11
                 EEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  26 alqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfeki 80 
                  + v+p++rr Glg+ l++  a+++ ++g +++ v v + tp+ ++ye+lGf   
  KIR62891.1  88 EVLVHPSVRRTGLGRDLARVAARRVYQEGFQSIGVEVVGGTPAVAFYEALGFSRE 142
                 46799***********************************************876 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.16
                 E-GGG-SSSHHHHHHHHHHHHHHHS-S-EE...EEEETT-HHHHHHHHHHT-EEE CS
        FR47  29 vlpehrrrGlgsrlvkalakeiaergktvl...lvvvasNtpsirlyeklGfeki 80 
                 v +ehr+ G  + + + +  e++ ++ t++    + +++N++  ++   lG++ +
  KIR62891.1 263 VVQEHRGYGIDRAIKARMLLELRSAEPTLTevqTWNAQANEAMLKVNAELGYRPD 317
                 5678999999999999999999998887762213445566666777778888866 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   2.1e-11   5.5e-08      34     117 .]      55     139 ..      22     139 .. 0.80
   2 ?    0.5   0.0      0.27   6.9e+02      34      86 ..     228     281 ..     196     310 .. 0.64

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2.1e-11
                     EEEEEEET.......TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  34 gllvaeed.......geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                       +va+ d       g ++G++ +l   d     + + ++ V+p+ r+ GlG+ L + +++r+ +eg++ i ++v +  ++a+++Ye lGF
      KIR62891.1  55 ISWVAQADpaaggapGPILGHVHVLLLGD-----IGVLEVLVHPSVRRTGLGRDLARVAARRVYQEGFQSIGVEV-VGGTPAVAFYEALGF 139
                     6777888877776666699***9999999.....9999********************************98888.789*******99**9 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.27
                     EEEEEEET..TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHH CS
  Acetyltransf_1  34 gllvaeed..geliGfisllkipdekggvayieslaVspeyrgkGlGsaLleale 86 
                     ++++a +d  ge++G   +    + ++ +a  ++  V  e+rg G+ +a    ++
      KIR62891.1 228 YIVLATHDrtGEVAGLTEVVVPAQ-HPTRADQYDTIVVQEHRGYGIDRAIKARML 281
                     444455555577888887777777.778888888888999999998666655555 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   2.3e-10   5.9e-07       6      75 ..      57     140 ..      52     141 .. 0.66
   2 ?    0.7   0.0      0.28   7.3e+02      29      43 ..     260     274 ..     226     308 .. 0.61

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.3e-10
                     EEEEET.......TEEEEEEEEEEESTCTEE..EEE-GGGTTSSHHHHHHHHTT.....SEEEEEEEEE..THHHHHHHHHHTTEE CS
  Acetyltransf_7   6 fVaedd.......gkivGfialslldaeitr..laVdpeyrgkGiGraLleaae.....kgiileqlel..naekaikfYeklGFe 75 
                     +Va+ d       g i+G + + ll+ +i+   + V+p+ r+ G+Gr L ++a+     +g++ + +e+    ++a++fYe lGF 
      KIR62891.1  57 WVAQADpaaggapGPILGHVHVLLLG-DIGVleVLVHPSVRRTGLGRDLARVAArrvyqEGFQSIGVEVvgG-TPAVAFYEALGFS 140
                     67766677766666666766666655.3333459****************9522345555644223334232.289*********7 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.28
                     EEEE-GGGTTSSHHH CS
  Acetyltransf_7  29 rlaVdpeyrgkGiGr 43 
                        V +e+rg Gi r
      KIR62891.1 260 DTIVVQEHRGYGIDR 274
                     356778999999944 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     8e-09     2e-05      56     109 ..      88     142 ..      57     151 .. 0.85
   2 ?    1.1   0.0      0.14   3.5e+02      54     106 ..     258     314 ..     207     323 .. 0.63

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 8e-09
  Acetyltransf_10  56 llfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYeklGFkav 109
                       + V+p+ r++G+g+ L   + +++ ++g +   ++v   + av+fYe lGF + 
       KIR62891.1  88 EVLVHPSVRRTGLGRDLARVAARRVYQEGFQSiGVEVVGGTPAVAFYEALGFSRE 142
                      568*********************9899999899******************876 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.14
  Acetyltransf_10  54 isllfVdpeyrgqGigkaLleaveeeaekdgikl..eltvnasp..yavpfYeklGF 106
                       +  +V +e+rg Gi +a+  +++ e++ +++ l    t na+   +  ++   lG+
       KIR62891.1 258 QYDTIVVQEHRGYGIDRAIKARMLLELRSAEPTLteVQTWNAQAneAMLKVNAELGY 314
                      444589999999999999999999888888877664334455543244555555555 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00092       2.4      29      59 ..      88     118 ..      82     121 .. 0.89
   2 ?    4.5   0.0     0.015        38      23      53 ..     254     284 ..     232     291 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00092
  Acetyltransf_CG  29 hTeVpeelrGkGiAkkLvkaalddareeglk 59 
                       + V++++r+ G+++ L++ a   + +eg++
       KIR62891.1  88 EVLVHPSVRRTGLGRDLARVAARRVYQEGFQ 118
                      5789******************999999875 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.015
  Acetyltransf_CG  23 gvldfthTeVpeelrGkGiAkkLvkaaldda 53 
                       + d + T+V +e+rG Gi +++  ++l + 
       KIR62891.1 254 TRADQYDTIVVQEHRGYGIDRAIKARMLLEL 284
                      4778899***********9887766666555 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00016       0.4      75     126 ..      85     140 ..       7     141 .. 0.89
   2 ?    0.0   0.1      0.33   8.4e+02      64      85 ..     231     252 ..     229     256 .. 0.87
   3 ?   -0.3   0.0      0.41     1e+03      79     105 ..     261     287 ..     256     293 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
                     EEEEEEE-CCGTTS-HHHHHHHHHHHHHHHT.....T--EEEE--SSHHHHHTTT-E CS
  Acetyltransf_9  75 gvtgVavapehrgrgvlskLlaraleemree.....gqplsllfPssipiYrrfGye 126
                     gv  V v+p  r+ g+ ++L + a +++++e     g++++ ++P+ +++Y+ +G++
      KIR62891.1  85 GVLEVLVHPSVRRTGLGRDLARVAARRVYQEgfqsiGVEVVGGTPA-VAFYEALGFS 140
                     8999******************999999988333345889999999.9******996 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.33
                     EEETTEEEEEEEEEEEEE-CCG CS
  Acetyltransf_9  64 lnvpGktlkaagvtgVavapeh 85 
                     l+++++t ++ag+t V v ++h
      KIR62891.1 231 LATHDRTGEVAGLTEVVVPAQH 252
                     57899999**********9998 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.41
                     EEE-CCGTTS-HHHHHHHHHHHHHHHT CS
  Acetyltransf_9  79 VavapehrgrgvlskLlaraleemree 105
                     + v  ehrg g+ +++ ar+l e+r+ 
      KIR62891.1 261 TIVVQEHRGYGIDRAIKARMLLELRSA 287
                     67899*******999999999888875 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00011      0.28      26     130 ..      10     119 ..       2     128 .. 0.76
   2 ?   -1.9   0.0       1.4   3.5e+03      36      69 ..     186     224 ..     172     243 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
  Acetyltransf_6  26 tdpedleallelfraqwarrpdvfadpltraflrdllaalaargalrlyvlrldgrpvAvalglrsgdrly.......ywlggydpelaklspgl 113
                     ++p++l+ ll+ + a  a+      +p++  +lr++l++  ++++ r++++   +  +++a g + g++          + + ++p+ ++ ++g+
      KIR62891.1  10 ASPAELASLLDTLNAVLAAD-LPQDPPWRGTHLREYLSEVMPGER-RISWVAQADPAAGGAPGPILGHVHVlllgdigVLEVLVHPSVRRTGLGR 102
                     589*****************.99999*************975555.66666665555555544444444430111111566677999******** PP

  Acetyltransf_6 114 lllweliedaaeeGlrr 130
                      l + ++++  +eG+++
      KIR62891.1 103 DLARVAARRVYQEGFQS 119
                     *************9986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.4
  Acetyltransf_6  36 elfraqwarr.....pdvfadpltraflrdllaalaarg 69 
                     e++++ +a+       ++  + +  + lrd la+l +rg
      KIR62891.1 186 EAYARAKAEVrdvddGELRPSSYDPQRLRDSLATLHRRG 224
                     333333322224444334444444456666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 2157.58
//
Query:       KIR62892.1  [L=447]
Description: murein transglycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-08   31.7   1.9    2.9e-07   30.0   0.1    2.4  3  SLT_2     Transglycosylase SLT domain
    0.00021   20.9   0.0    0.00045   19.9   0.0    1.5  1  SLT       Transglycosylase SLT domain


Domain annotation for each model (and alignments):
>> SLT_2  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.15   1.3e+03      90     107 ..     303     320 ..     298     322 .. 0.87
   2 !   30.0   0.1   3.3e-11   2.9e-07     155     200 ..     363     407 ..     357     414 .. 0.92
   3 ?   -0.8   0.0      0.08   7.1e+02     272     289 ..     419     436 ..     411     438 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.15
       SLT_2  90 iivAiwgvEtryGkntgk 107
                 +++Ai  vE++ G+  g 
  KIR62892.1 303 TLAAIGYVESNHGQANGA 320
                 6899**********9886 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 3.3e-11
       SLT_2 155 amGltQFmPssylkyAvDfdgdgrrDlwnspaDalaSvAnyLkkhg 200
                 a+G +QF+P+++++ ++D d+dgr++  +  +Da   ++nyL k g
  KIR62892.1 363 AIGPMQFIPTTWQEIGADADNDGRKNPHD-LDDAALAAGNYLCKGG 407
                 9**************************87.************8765 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.08
       SLT_2 272 vitrYNrStlYalaVael 289
                 +i +YN+ + Ya+ V+  
  KIR62892.1 419 AILSYNDVRRYAQDVFDK 436
                 799**********99875 PP

>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     5e-08   0.00045      13      97 ..     300     426 ..     292     441 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 5e-08
                 -HHHHHHHHHHHHTT-TT-B-TTS........................................EBTTTTBETTTHHHHHHHHT-SHHHHCSHH...HH CS
         SLT  13 epsllaaiaqvESgfnpkAvsksg........................................avGLmQimpstakrlglrvklsedelldPe...kn 68 
                 ++++laai  vES+        +                                         a+G mQ++p t +++g     ++d++++P    ++
  KIR62892.1 300 SWTTLAAIGYVESNHGQA-NGATLgpdgqalpeiigdaldgkggrqritdtdrglydkdtvydrAIGPMQFIPTTWQEIGAD--ADNDGRKNPHdldDA 395
                 567778888888865432.222222444666777777777777888888888888888888888****************96..566666666511156 PP

                 HHHHHHHHHH..HHHTTTTHHHHHHHHHHH- CS
         SLT  69 isagakyLks..lykqyngslllalaAYNaG 97 
                 + a+ +yL +  ++ ++ g+++ a+ +YN  
  KIR62892.1 396 ALAAGNYLCKggRNMTVPGDWWGAILSYNDV 426
                 6666666643224444455**********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 2805.20
//
Query:       KIR62893.1  [L=74]
Description: FmdB family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-12   47.4   0.3    2.3e-12   46.8   0.3    1.3  1  Zn-ribbon_8      Zinc ribbon domain
  ------ inclusion threshold ------
       0.53   11.0   7.5       0.64   10.8   7.1    1.3  1  Adeno_E1B_55K_N  Adenovirus E1B protein N-terminus


Domain annotation for each model (and alignments):
>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.3   2.6e-16   2.3e-12       1      39 [.       1      40 [.       1      41 [. 0.94

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 2.6e-16
  Zn-ribbon_8  1 MPiYeYrCeeCghefevlqsisdaplta.CPeCgsevrrv 39
                 MP Ye+rC++Cg +fev +++++a ++a CP  ++++ ++
   KIR62893.1  1 MPRYEFRCRACGDTFEVNRPMAQAGEPAsCPGGHADTVKL 40
                 **********************9999999******88876 PP

>> Adeno_E1B_55K_N  Adenovirus E1B protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   7.1   7.1e-05      0.64      31      67 ..      36      70 ..      28      72 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.1e-05
  Adeno_E1B_55K_N 31 enLrLLasaasvsssdgesssdqaaaegGgagaaaGg 67
                     +  +LL+  a+     g ++++ aa  +Gg+g++ Gg
       KIR62893.1 36 DTVKLLSTVAV--TGRGGAPATAAAPSAGGGGGCCGG 70
                     6889***9997..445556777777777777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.30s 00:00:00.75 Elapsed: 00:00:00.48
# Mc/sec: 461.65
//
Query:       KIR62894.1  [L=174]
Description: phospholipase a2 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-35  119.9   3.8    9.4e-35  119.6   3.8    1.1  1  Phospholip_A2_3  Prokaryotic phospholipase A2


Domain annotation for each model (and alignments):
>> Phospholip_A2_3  Prokaryotic phospholipase A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   3.8   5.2e-39   9.4e-35       8     111 .]      48     152 ..      43     152 .. 0.95

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 5.2e-39
  Phospholip_A2_3   8 tslkeFlkarnakae..pseldwssdgCssspdkplgfeFlesCqrhdFgYrnykaqkrfteanrkridknfkkdlkkqCkkveklkkkaCkal 99 
                       s++++++ar+++++  ++ ++ws+d+Cssspd+plgf+F+ sCqrhdFgYrnyk++++f  an++r+d+ f++dlk++C++++++ + aC++l
       KIR62894.1  48 SSYNTWNSARQNQSAwaEYAFNWSTDYCSSSPDNPLGFNFKLSCQRHDFGYRNYKEMGQFP-ANKARVDSAFYEDLKRVCATYSSVVRPACYSL 140
                      5678999999998768899*****************************************9.9******************************* PP

  Phospholip_A2_3 100 advyyeavrafg 111
                      a++yyeav  fg
       KIR62894.1 141 AWTYYEAVSIFG 152
                      ********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1148.39
//
Query:       KIR62895.1  [L=558]
Description: FenI [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-87  294.0   0.8    1.5e-87  293.6   0.8    1.1  1  GHL10      Glycosyl hydrolase-like 10
  ------ inclusion threshold ------
       0.06   13.5   0.0        1.4    9.1   0.0    2.4  2  GHL6       Hypothetical glycosyl hydrolase 6
       0.13   11.2   0.0       0.33    9.8   0.0    1.6  1  Melibiase  Melibiase


Domain annotation for each model (and alignments):
>> GHL10  Glycosyl hydrolase-like 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.6   0.8   2.6e-91   1.5e-87       2     302 ..      57     384 ..      56     389 .. 0.96

  Alignments for each domain:
  == domain 1  score: 293.6 bits;  conditional E-value: 2.6e-91
       GHL10   2 lRgvWlanvdsvdll..........dkvqkkeaikkLddlq...lntvyvqvkndgtalypsavakwselktgkkgedpGrDvLaevideahkrnlkvl 87 
                 +R++W+++v ++d++          +  q+ e++  Ld  q    n+v+vqv+++++a++ps   +wse++tg++g+dpG D+La+++deahkrnl+++
  KIR62895.1  57 FRAMWISSVVNIDWPtkasqtapdrAAAQRAEYLGWLDLAQrlhHNAVVVQVRPTADAFWPSPHEPWSEYLTGVRGQDPGWDPLAFLVDEAHKRNLEFH 155
                 79*********************9988899999999988888779****************************************************** PP

       GHL10  88 aWF...evglnak.....elselvkahPasltvqkrdevkts..esaagerlwlnPliPevqdfitklvvevvkrYdvDgvqlDDyfylpesfGydlid 176
                 aWF   ++++ a+     +l +l  +hPa+   q+++++ ++   + ag rl++nP++P v++f+ + ++++v rYdvDgv++DDyfy++ s  y+++d
  KIR62895.1 156 AWFnpyRISMPAPggagaDLTQLAPDHPAR---QHPEWTFAYppAGVAGSRLYYNPGVPAVREFVQTAMMDAVTRYDVDGVHFDDYFYPYPSGTYQVPD 251
                 ***************9999***********...********9444679*************************************************** PP

       GHL10 177 valYrqetkkealsnkeddlwidWRrdkisqlvkklnatikavkPnvkisvsPagvw.n.............laydeflaDtrrWiekgvideivlqvY 261
                  a++ +      ++ ++d     WRrd+i+ l++++n++ika+kP vk++vsP+g w n              +yd + aDtr+W++++ id+iv+q+Y
  KIR62895.1 252 DATFAEFN--RGFTDRAD-----WRRDNIDLLIREMNDRIKAAKPWVKFGVSPFGIWrNasadpngsdttgsQSYDIISADTRKWVKQEWIDYIVPQLY 343
                 *****999..59999999.....**********************************98**************************************** PP

       GHL10 262 reklaafaaeldvlakreskevkptavglliGlaakkvpep 302
                 +      aa++ +l  +++++v+ t+v+l+iG+a +k + p
  KIR62895.1 344 WYIGQYPAADYARLVPWWAETVRGTRVQLYIGQADYKSGDP 384
                 **6667799***************************97766 PP

>> GHL6  Hypothetical glycosyl hydrolase 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.047   2.8e+02       7      64 ..      94     156 ..      91     163 .. 0.78
   2 ?    9.1   0.0   0.00023       1.4      73     136 ..     181     236 ..     173     237 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.047
        GHL6   7 eelkeagadtlvifardaggvvyYrtkldfvtehpklkr........dllkelvkachregikvvv 64 
                 + +++++ +++v+  r +   +++++     +  ++l++        d l+ lv+++h++++ + +
  KIR62895.1  94 DLAQRLHHNAVVVQVR-PTADAFWPSPH--EPWSEYLTGvrgqdpgwDPLAFLVDEAHKRNLEFHA 156
                 678999*******888.88899999987..555555554445777789999999999999987765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00023
        GHL6  73 eriyeqhpeWaavkenGeviiiegervgepgwptlCinsgyqeklaeeleealkrldlDGifld 136
                 ++ ++qhpeW +  +      + g r ++  +p ++     +e++   + +a+ r+d+DG+ +d
  KIR62895.1 181 DHPARQHPEWTFAYPPAG---VAGSRLYY--NPGVPAV---REFVQTAMMDAVTRYDVDGVHFD 236
                 67789*****99887633...36777777..6666654...46666778899*********987 PP

>> Melibiase  Melibiase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   5.6e-05      0.33     106     190 ..     140     236 ..     134     239 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 5.6e-05
   Melibiase 106 leelakevhekglkfGlWvePemvsa......dsel........yrehPdwvlqvedrsrtesrnqlvLdlsrpdvvdyiievldnllkeaqidyvkWD 190
                 l+ l++e+h+++l+f  W++P  +s+       ++l        +r+hP+w + ++      sr  l  + + p+v++++ + + + ++  ++d v +D
  KIR62895.1 140 LAFLVDEAHKRNLEFHAWFNPYRISMpapggaGADLtqlapdhpARQHPEWTFAYPPAGVAGSR--LYYNPGVPAVREFVQTAMMDAVTRYDVDGVHFD 236
                 77899*****************99962222222344222333335899*****99998888877..5669999***********999999999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3826.75
//
Query:       KIR62896.1  [L=503]
Description: alpha-L-arabinofuranosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-37  127.2   0.0    9.3e-37  126.7   0.0    1.2  1  Alpha-L-AF_C    Alpha-L-arabinofuranosidase C-terminal domain
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.49   10.3   0.0    2.0  2  Glyco_hydro_44  Glycoside hydrolase family 44
        0.3   11.5   1.0        1.3    9.5   0.1    2.4  3  GH-E            HNH/ENDO VII superfamily nuclease with conser


Domain annotation for each model (and alignments):
>> Alpha-L-AF_C  Alpha-L-arabinofuranosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.0   1.6e-40   9.3e-37       1     168 []     290     492 ..     290     492 .. 0.96

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 1.6e-40
                   EEEEE--S-..S............SS------HHHHHHHHHHHHHHHHHTTT--EEEES-SBSTT-.....SEEEETTE.EEE-HHHHHHHHHHHS- CS
                   xxxxxxxxx..x............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Alpha-L-AF_C   1 gEyavwyds..p............glleqqntledAlaeAafltglernaDvVkmasyAplvnviaatqWspdliwdngkvvgtpsYyvqklfskna 83 
                   +E++vwy+s  +             l e+++t  dA++++ +l++l+r+aD+V +a+ A+l nvia     p+ +  +g +++++++++++l++++a
    KIR62896.1 290 DEWNVWYQSrlQadldrrgwveapTLIEDDYTAVDAVVVGDLLITLLRHADRVGVACQAQLANVIA-----PIRTRTGGPAWRQSIFHPFALTARYA 381
                   9********872567788888898******************************************.....************************** PP

                   -SEEEEEEEE--EEEEEEEET........................SS--EEEEEEETT-.-SEEEEEEEE.E-.STT----SSSTTSSEEEEEEE.E CS
                   xxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxx RF
  Alpha-L-AF_C  84 ggtvlpvelespkyeikgege........................aeeavevevdleglekaskaevtvl.sg.dlkaeNtfenpekvvpkeeklak 154
                   +gtvl++e  +p+y++k++g+                         ++++++++dl+gl + + a++ +l +g d++a+Nt  +p++v+p+e    +
    KIR62896.1 382 RGTVLRTEPVCPTYATKRYGDvpvldtvavhdeetgaltvlavnrGTADLPLDLDLRGLPGLAGAAHLTLaAGdDPDAVNTEAEPDRVTPRELAAPT 478
                   ********************99***********************8889**********999999*****888*********************999 PP

                   E-E..EEEEE-TTE CS
                   xxxxxxxxxxxxxx RF
  Alpha-L-AF_C 155 vsggkftytlpayS 168
                    +gg+  + lpa S
    KIR62896.1 479 PDGGRCAVLLPAVS 492
                   99999999999988 PP

>> Glyco_hydro_44  Glycoside hydrolase family 44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.35   2.1e+03      14      40 ..     100     126 ..      93     128 .. 0.80
   2 ?   10.3   0.0   8.2e-05      0.49     112     182 ..     150     214 ..     136     246 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.35
                     .....EEESHHHHHTT--GGEEEEE-- CS
  Glyco_hydro_44  14 asedsssdefletnkkagaksllTvpl 40 
                     +++    def++++++ag +++++v l
      KIR62896.1 100 ETNAFGLDEFMTWAAAAGVEPMMAVNL 126
                     45556789***************9976 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 8.2e-05
                     HHHHHHH--TSTTS--EEEESS-GGG.HHHH-TTT--S---HHHHHHHHHHHHHHHHHH-TT-EEEEEEE-S CS
  Glyco_hydro_44 112 nhlvkklgsasatgvkfysLDNEpel.WssTHrdvhpekvtydellertidlAkavkaadpdaevlGpaswg 182
                     + l + +g ++  gvk++ L NE +  W+  H+       t++e      ++A+a k +dp++ +++  s g
      KIR62896.1 150 SDLRRSHGAEQPYGVKLWCLGNELDGpWQVGHK-------TAEEYGRLAAETARAMKMIDPSVSLVACGSSG 214
                     56888999999*************976999997.......7889999999************9998776665 PP

>> GH-E  HNH/ENDO VII superfamily nuclease with conserved GHE residues
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.52   3.1e+03      46      69 .]     138     159 ..     136     159 .. 0.78
   2 ?    9.5   0.1   0.00022       1.3      11      32 ..     170     191 ..     157     200 .. 0.80
   3 ?   -2.3   0.1         1   6.3e+03      22      50 ..     274     297 ..     268     304 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.52
        GH-E  46 ldeynnpdnyrledpseNrShgae 69 
                 l++ n+p  +rl d +  rShgae
  KIR62896.1 138 LEYANHPGGTRLSDLR--RSHGAE 159
                 6788999999998877..777776 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00022
        GH-E  11 gtsrerdwdmGHkpgreyrrlv 32 
                 g + +++w++GHk+  ey rl 
  KIR62896.1 170 GNELDGPWQVGHKTAEEYGRLA 191
                 567889************9994 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1
        GH-E  22 Hkpgr.eyrrlvkkaeeggitqkefldeyn 50 
                 H+    ++rr        +i+  e + +y+
  KIR62896.1 274 HVAAKqRHRRK------LKISFDEWNVWYQ 297
                 55533233333......7788888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3368.80
//
Query:       KIR62897.1  [L=157]
Description: hypothetical protein TK50_18370 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.092   11.8   0.7       0.11   11.5   0.7    1.2  1  DUF4015    Putative glycosyl hydrolase domain
       0.12   11.9   0.3       0.15   11.6   0.3    1.1  1  PspA_IM30  PspA/IM30 family


Domain annotation for each model (and alignments):
>> DUF4015  Putative glycosyl hydrolase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.7   1.3e-05      0.11      90     135 ..      56     101 ..      48     138 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.3e-05
                 HHHSGGGB-.EETTSSB---TTS---B-TT-GGGHHHHHHHHHHHHH CS
     DUF4015  90 aearpelav.kkkdgevwkdsegeawvdpykeevwdynieiAkeaae 135
                 a a ++++  + ++g+ w+ds  + wvd ++e+  + n +iA  a  
  KIR62897.1  56 AAADQDWSAwHADSGDQWADSA-QDWVDYANENLAAGNTDIAASAFD 101
                 4568899998999*****9875.78*****************98864 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   1.7e-05      0.15      62     102 ..      72     112 ..      46     136 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.7e-05
   PspA_IM30  62 eqkeqakklekkAkaALtkgeeeLArealaeikslekqaea 102
                 + ++ a+++ ++A + L +g+ + A+ a   ++++++ a +
  KIR62897.1  72 QWADSAQDWVDYANENLAAGNTDIAASAFDTAANHADLAGG 112
                 557789*******************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1170.15
//
Query:       KIR62898.1  [L=468]
Description: hypothetical protein TK50_18375 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.076   12.6   4.6          1    8.9   0.2    2.7  3  zf_C2H2_10      C2H2 type zinc-finger
      0.076   12.7   2.4       0.13   12.0   1.4    1.7  2  TackOD1         Thaumarchaeal output domain 1
       0.87    9.6   6.9       0.17   11.9   3.4    1.6  2  zinc-ribbons_6  zinc-ribbons
        2.8    8.0   6.3        4.8    7.2   3.7    2.3  2  HypA            Hydrogenase/urease nickel incorporation, meta
        3.5    7.7   7.0        7.7    6.6   1.4    2.6  2  Anti-TRAP       Tryptophan RNA-binding attenuator protein inh
        5.8    7.0  11.4        1.3    9.1   6.8    2.1  2  DZR             Double zinc ribbon


Domain annotation for each model (and alignments):
>> zf_C2H2_10  C2H2 type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.3   3.8e+03      13      19 ..     311     317 ..     307     317 .. 0.87
   2 ?    8.9   0.2   0.00035         1       1       9 [.     351     359 ..     351     364 .. 0.89
   3 ?    4.6   0.4    0.0077        23       4       9 ..     385     390 ..     384     393 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.3
  zf_C2H2_10  13 PDiDtLQ 19 
                 PD+  LQ
  KIR62898.1 311 PDLERLQ 317
                 ***9999 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00035
  zf_C2H2_10   1 PefsCPKCq 9  
                 P f+CP+Cq
  KIR62898.1 351 PSFACPRCQ 359
                 99******9 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.0077
  zf_C2H2_10   4 sCPKCq 9  
                  CPKCq
  KIR62898.1 385 TCPKCQ 390
                 5****9 PP

>> TackOD1  Thaumarchaeal output domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.77   2.3e+03      68      82 ..     292     306 ..     266     310 .. 0.69
   2 ?   12.0   1.4   4.2e-05      0.13      89     134 ..     354     394 ..     350     398 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.77
     TackOD1  68 elvdrirlCpsCksg 82 
                   v ++r+C++C+  
  KIR62898.1 292 LPVRTLRTCTTCRLE 306
                 456778889888765 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4.2e-05
     TackOD1  89 vCpkCkSidieeqelihhftCgnvgpeeeflkegkleCpkCktkLr 134
                 +Cp C+ +d +e+ +  + +Cg    e+  +     +CpkC+ + r
  KIR62898.1 354 ACPRCQGMDADETVVTYCQRCGDRRAETALR-----TCPKCQFDFR 394
                 7*********************998877655.....6999997766 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.7     8e+03      18      23 ..     299     304 ..     294     310 .. 0.59
   2 ?   11.9   3.4   5.6e-05      0.17       2      38 ..     354     392 ..     353     398 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.7
                     E-TTT- CS
  zinc-ribbons_6  18 hCeaCq 23 
                     +C +C+
      KIR62898.1 299 TCTTCR 304
                     344443 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 5.6e-05
                     --SSS-S--EE-SSEEE-TTT--..EEEEEEE-SSS-S- CS
  zinc-ribbons_6   2 kCpeCqqelekrgeqyhCeaCqe..dlkkealCpeCeqe 38 
                      Cp+Cq     ++  + C+ C +    +   +Cp+C+  
      KIR62898.1 354 ACPRCQGMDADETVVTYCQRCGDrrAETALRTCPKCQFD 392
                     6*****99889999*******99434455668****865 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2      0.13   3.9e+02      87      96 ..     345     362 ..     294     368 .. 0.61
   2 ?    7.2   3.7    0.0016       4.8      67      95 ..     365     392 ..     324     401 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.13
                 H........S-TTTSSS- CS
        HypA  87 l........rCpkCgsad 96 
                           Cp+C++ d
  KIR62898.1 345 QlngkgpsfACPRCQGMD 362
                 033444444888888765 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0016
                 E--EEEETTTS-EEECHHHHHS-TTTSSS CS
        HypA  67 vpvkvrCreCgkefeleekalrCpkCgsa 95 
                 + v+++C++Cg +  +++   +CpkC+  
  KIR62898.1 365 ETVVTYCQRCGDRRAETAL-RTCPKCQFD 392
                 5677889999987775542.379999865 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.5     0.013        38      27      39 ..     349     361 ..     340     366 .. 0.82
   2 ?    6.6   1.4    0.0026       7.7       9      37 ..     364     390 ..     359     392 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.013
                 .....E-TTTTTS CS
   Anti-TRAP  27 prasleCPkCsGk 39 
                 ++ s+ CP+C+G 
  KIR62898.1 349 KGPSFACPRCQGM 361
                 467999*****97 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0026
                 CEEE-TTTTTTSEETTE......E-TTTT CS
   Anti-TRAP   9 LEtkCdaCngsGkiepeeprasleCPkCs 37 
                  Et    C++ G+  +e   a   CPkC+
  KIR62898.1 364 DETVVTYCQRCGDRRAE--TALRTCPKCQ 390
                 5888899********99..78889****6 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   1.4      0.24   7.2e+02      27      36 ..     312     360 ..     293     366 .. 0.53
   2 ?    9.1   6.8   0.00043       1.3       1      35 [.     355     390 ..     355     395 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.24
         DZR  27 a.......................................edrCpsCge 36 
                 +                                       + +Cp+C+ 
  KIR62898.1 312 DlerlqertrrtrdlassisavvtpyvlagrlvqlngkgpSFACPRCQG 360
                 2334444444555555555555555555555555555555667888875 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00043
         DZR   1 CpqCgeelppdar..fCseCgtklkavaaedrCpsCg 35 
                 Cp+C+    ++    +C++Cg +  a++a ++Cp+C+
  KIR62898.1 355 CPRCQGMDADETVvtYCQRCGDRR-AETALRTCPKCQ 390
                 999988766555456********8.58999******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3467.64
//
Query:       KIR62899.1  [L=241]
Description: methyltransferase type 11 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-09   38.9   0.7    3.7e-09   37.1   0.7    2.0  1  Methyltransf_11  Methyltransferase domain
    1.1e-06   28.8   0.2      2e-06   28.0   0.2    1.4  1  BON              BON domain
    1.1e-05   25.4   0.0    1.7e-05   24.8   0.0    1.2  1  Methyltransf_8   Hypothetical methyltransferase
    8.4e-05   23.2   0.2    0.00073   20.2   0.0    2.4  3  Methyltransf_25  Methyltransferase domain
    0.00071   20.3   0.1     0.0018   19.0   0.1    1.7  1  Methyltransf_12  Methyltransferase domain
     0.0016   18.3   0.0      0.019   14.8   0.0    2.1  2  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.019   14.8   0.1      0.042   13.7   0.1    1.6  1  Methyltransf_23  Methyltransferase domain
       0.02   14.3   0.0      0.029   13.7   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.7   1.7e-12   3.7e-09      49      95 ..     118     165 ..      91     166 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.7e-12
                      TEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  49 vadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGllv 95 
                      vad++ +lp++d+s+D+ ++ + l+h+ d   +++e++RvL+pgG+l 
       KIR62899.1 118 VADLSgSLPLADDSVDVLFAVHILEHLIDFLPLVDECHRVLRPGGVLH 165
                      56666469*************************************985 PP

>> BON  BON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.2   8.7e-10     2e-06      14      68 ..      30      84 ..      18      85 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 8.7e-10
                HHHCHTTGCCCEEEEETTCEEEECEEECHHHHHHHHHHHHCCTTEEEEEEEEEEE CS
         BON 14 akdggldaadinVevenGvVtLsGtVdseaekekAveiarnvaGVkkVvnelkvr 68
                a d +l+   ++V  ++Gv+ L+G+V+++a+ +++ e++ ++aGV +V  +++v+
  KIR62899.1 30 AHDARLRDLAVRVRFDRGVAHLTGEVADAAQLRLVRELIGRLAGVFGVWGRVRVA 84
                5567888899**************************************9999997 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   7.7e-09   1.7e-05      73     156 ..      87     166 ..      76     169 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 7.7e-09
                     TS-EEEES-TT-HHHHH--S-..EEEEESS-SSTTEEES-T.TS-S--TT-EEE..EEEES---SS-HHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_8  73 nlvvadlGcGeakiaeavrekekvrsfdlvavnervvacdl.akvPledesvdv..avfclslmgtnladflkeanrvlkvGGllkv 156
                     + vv+dlGcG +k         +   +d+ +      + dl   +Pl+d+svdv  av+ l  +  ++   + e +rvl++GG+l+v
      KIR62899.1  87 EPVVVDLGCGGTKQY------PQNLGLDIYPAPGVDAVADLsGSLPLADDSVDVlfAVHILEHL-IDFLPLVDECHRVLRPGGVLHV 166
                     579*******99865......344689*9998888888999779*********93344444443.46677899***********998 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.2   9.4e+03      47      48 ..      41      42 ..      10      67 .. 0.56
   2 ?    0.0   0.0      0.63   1.4e+03       1       8 [.      90      97 ..      90     105 .. 0.88
   3 !   20.2   0.0   3.2e-07   0.00073      54      97 .]     120     162 ..     110     162 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.2
                     TE CS
  Methyltransf_25 47 nv 48
                     +v
       KIR62899.1 41 RV 42
                     22 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.63
                     EEEET-TT CS
  Methyltransf_25  1 vLdlGcGt 8 
                     v+dlGcG 
       KIR62899.1 90 VVDLGCGG 97
                     89*****5 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 3.2e-07
                      BC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  54 da.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      d+  +lp++d+s+D+ ++++ l+hl   d   +++e++rvL+pgG
       KIR62899.1 120 DLsGSLPLADDSVDVLFAVHILEHLI--DFLPLVDECHRVLRPGG 162
                      442569************877***76..7899************9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   7.9e-07    0.0018      64      99 .]     124     164 ..     104     164 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7.9e-07
  Methyltransf_12  64 g.....ssfDlvvasnvlhhlkdirevldnirklLkpgGrl 99 
                      +     +s+D+ +a + l+hl d   ++d+++++L+pgG+l
       KIR62899.1 124 SlpladDSVDVLFAVHILEHLIDFLPLVDECHRVLRPGGVL 164
                      2344568********************************97 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.12   2.8e+02       6      14 ..      89      97 ..      85     109 .. 0.85
   2 !   14.8   0.0   8.5e-06     0.019      66     114 ..     125     173 ..     116     208 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.12
  Methyltransf_31  6 rvlDlGCGt 14
                     +v+DlGCG 
       KIR62899.1 89 VVVDLGCGG 97
                     79******5 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 8.5e-06
  Methyltransf_31  66 leklledekfDlilsnevlnaladpdkileeiervlkpggilliedpr..l 114
                      l+  l+d+++D++++  +l +l d      e +rvl+pgg+l + +p+  +
       KIR62899.1 125 LP--LADDSVDVLFAVHILEHLIDFLPLVDECHRVLRPGGVLHVMSPWwgH 173
                      77..89*****************************************9441 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.9e-05     0.042      25     120 ..      89     169 ..      56     198 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.9e-05
  Methyltransf_23  25 rvLdiGcGtG.illevlrengfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllkpgGylll 117
                       v+d+GcG      + l    +   gvD+   +++                  +  +++ d+  + + leh+ d+  l++  ++ l+pgG+l +
       KIR62899.1  89 VVVDLGCGGTkQYPQNLGLDIYPAPGVDAVADLSGS----------------LPLADDSVDVLFAVHILEHLIDFLPLVDECHRVLRPGGVLHV 166
                      677777776623333333333333344443322221................22255799********************************99 PP

  Methyltransf_23 118 sep 120
                      + p
       KIR62899.1 167 MSP 169
                      876 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.3e-05     0.029     106     152 ..     121     167 ..     109     175 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
                      -TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEE CS
  Ubie_methyltran 106 naeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvl 152
                       +  Lp  dds Dv+   + l  + D l  + e +rvl+pGG l+v+
       KIR62899.1 121 LSGSLPLADDSVDVLFAVHILEHLIDFLPLVDECHRVLRPGGVLHVM 167
                      56689****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1744.45
//
Query:       KIR62900.1  [L=105]
Description: hypothetical protein TK50_18385 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00035   20.8   0.2      0.019   15.2   0.0    2.3  2  DUF4177   Domain of unknown function (DUF4177)


Domain annotation for each model (and alignments):
>> DUF4177  Domain of unknown function (DUF4177)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.1    0.0044        79      37      45 ..      21      30 ..      16      45 .. 0.77
   2 !   15.2   0.0   1.1e-06     0.019      29      48 ..      48      69 ..      37      79 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0044
     DUF4177 37 GWrlvsii.p 45
                GW+lv i   
  KIR62900.1 21 GWELVFIWyG 30
                9****98763 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.1e-06
     DUF4177 29 ilnelAkeGWrlvsii..pvke 48
                 ln+ + +GW+lv +   p ++
  KIR62900.1 48 HLNRAGDQGWELVGMSedPSQP 69
                59************99755444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       164  (0.00914719); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 773.07
//
Query:       KIR62901.1  [L=545]
Description: heme ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-40  138.5   0.1      1e-22   81.1   0.0    3.8  3  ABC_tran         ABC transporter
      4e-16   59.7   9.7    0.00059   19.7   0.0    4.2  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    5.5e-10   39.0   0.3      0.059   12.8   0.0    4.1  4  SMC_N            RecF/RecN/SMC N terminal domain
    6.6e-09   35.4   0.5    0.00058   19.5   0.0    2.6  2  AAA_29           P-loop containing region of AAA domain
    7.4e-09   36.0   0.1    8.2e-05   22.9   0.0    2.8  2  AAA_22           AAA domain
    2.2e-07   31.6   2.3     0.0016   19.0   0.0    3.0  3  AAA_23           AAA domain
    3.7e-06   27.1   0.0      0.012   15.6   0.0    2.9  3  Dynamin_N        Dynamin family
    4.2e-06   27.0   5.8     0.0026   17.9   0.0    3.1  2  AAA_33           AAA domain
    5.9e-06   26.3   0.4      0.081   13.0   0.0    2.8  2  MMR_HSR1         50S ribosome-binding GTPase
    8.7e-06   25.7   0.7      0.045   13.7   0.0    2.5  2  NACHT            NACHT domain
    2.7e-05   24.7   0.1       0.18   12.3   0.0    2.9  2  AAA_18           AAA domain
    3.1e-05   23.7   2.3      0.017   14.7   0.1    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
    5.3e-05   23.0   8.4     0.0033   17.2   0.7    3.4  2  AAA_30           AAA domain
    0.00013   21.9  12.5     0.0011   18.9  12.5    2.1  1  ABC_tran_Xtn     ABC transporter
    0.00029   20.8   0.3       0.28   11.1   0.1    2.4  2  RsgA_GTPase      RsgA GTPase
    0.00036   20.3   0.1       0.13   12.0   0.0    2.4  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0005   17.8  12.2       0.01   13.4   0.1    3.1  3  DUF3584          Protein of unknown function (DUF3584)
    0.00056   19.6   0.7       0.91    9.1   0.1    2.5  2  SRP54            SRP54-type protein, GTPase domain
    0.00074   18.9   0.3       0.15   11.3   0.0    2.5  2  FtsK_SpoIIIE     FtsK/SpoIIIE family
     0.0012   18.6   0.3       0.79    9.4   0.0    2.3  2  AAA_24           AAA domain
     0.0016   18.9   0.1     0.0016   18.9   0.1    3.4  3  AAA_16           AAA ATPase domain
     0.0021   18.0   0.6       0.58   10.1   0.0    2.5  2  MobB             Molybdopterin guanine dinucleotide synthesis
     0.0021   18.0   0.7        1.1    9.3   0.1    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0024   17.6   0.1       0.49   10.0   0.0    2.5  2  Thymidylate_kin  Thymidylate kinase
     0.0035   17.4   0.1        2.8    8.0   0.0    2.6  2  AAA_14           AAA domain
      0.004   16.9   0.0        1.4    8.5   0.0    2.2  2  AAA_15           AAA ATPase domain
     0.0046   17.2  11.5     0.0072   16.6   0.2    3.5  3  AAA_28           AAA domain
      0.006   16.2   3.5        1.5    8.4   0.0    2.9  2  AAA_27           AAA domain
     0.0073   16.2   0.8        0.3   11.0   0.0    2.4  2  NTPase_1         NTPase
     0.0084   15.3   0.6        3.8    6.6   0.2    2.4  2  NB-ARC           NB-ARC domain
     0.0099   14.9   7.3       0.23   10.4   0.3    2.9  3  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
  ------ inclusion threshold ------
      0.014   14.7   0.5        1.1    8.6   0.1    2.5  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.015   14.4   0.5      0.092   11.8   0.0    2.3  2  T2SSE            Type II/IV secretion system protein
      0.019   14.8   2.4        5.2    6.8   0.1    3.1  3  MukB             MukB N-terminal
      0.035   14.1   1.7        2.6    8.0   0.2    3.0  2  AAA_5            AAA domain (dynein-related subfamily)
      0.063   13.4  10.1        5.3    7.2   6.4    2.7  2  DUF4110          Domain of unknown function (DUF4110)
        0.1   12.4   0.2         11    5.7   0.0    2.3  2  ATP_bind_1       Conserved hypothetical ATP binding protein
       0.16   12.0   4.7        1.3    9.1   0.1    3.0  3  DUF87            Helicase HerA, central domain
       0.18   11.6   0.5         18    5.0   0.0    2.4  2  PRK              Phosphoribulokinase / Uridine kinase family
        0.2   12.1   1.4         25    5.3   0.1    2.6  2  AAA              ATPase family associated with various cellul
       0.24   10.9   0.1         13    5.3   0.0    2.2  2  AAA_7            P-loop containing dynein motor region
       0.28   10.6   0.2       0.84    9.0   0.0    1.7  2  Pox_A32          Poxvirus A32 protein
          1    9.8   7.0         11    6.5   0.1    3.1  3  AAA_17           AAA domain
        1.2    7.7   5.0         10    4.6   0.0    2.7  3  AAA_13           AAA domain
        2.1    7.6   7.5        6.1    6.1   0.1    2.7  2  Zeta_toxin       Zeta toxin


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0   2.6e-25     1e-22       3     137 .]      22     187 ..      20     187 .. 0.95
   2 ?    0.9   0.1       1.5   6.1e+02      46      80 ..     296     335 ..     248     360 .. 0.79
   3 !   51.2   0.0   4.4e-16   1.7e-13       3     137 .]     367     495 ..     365     495 .. 0.80

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 2.6e-25
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................... RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...................... 79 
                  ++l + +g +v++vG nGaGKStLl++lagll  ++G++          +l+   + +g lpqep+  p+ tvr+                       
  KIR62901.1  22 GLDLVVAPGDVVGLVGVNGAGKSTLLRTLAGLLPVEAGSV----------TLSPPTATVGHLPQEPERRPGETVRDFlarrtgvtaaqaaldaatealt 110
                 5788899*********************************..........56689999******************9********************** PP

                 .......................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .......................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                                        + +e++e+++++lgl+ + d+++    + LSgGq  r  la +ll++ +++llDEpt+
  KIR62901.1 111 agaagsddayaealerwlglggaDLEERAEQVAAELGLTVDLDHPM----TALSGGQAARAGLASLLLSRYDVFLLDEPTN 187
                 ************9999999999999999*****************9....******************************8 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 1.5
                 TCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.....H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x RF
    ABC_tran  46 gkdlkeqeleslrkeigvlpqepqlfpeltvren.....e 80 
                 +k++k+++ e ++k+ +   q+++l ++l+v e+     e
  KIR62901.1 296 DKNVKHHRGETSEKQAAKARQTDRLIERLEVVEEprkewE 335
                 5678888889999999999999999999997776544431 PP

  == domain 3  score: 51.2 bits;  conditional E-value: 4.4e-16
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHHHHSTTGGTTCBG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvrenesdeeiekalsklglkelkdtv 101
                  v+l++    +vai+G nG+GK+tLl++l+g l  ++G+  l    +     e+ +++  +l ++p l+    +  + s +++ ++l+k+gl     ++
  KIR62901.1 367 PVTLQIDWADRVAITGANGSGKTTLLAALLGRLPLDAGHASLGPGVVVG---EVDQARGLFLGEQPLLDAFRLAVPELSPADARTLLAKFGLRA---DH 459
                 689999999*******************************887444444...344444455555555544443444478888999999999877...55 PP

                 ESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 102 vksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 v + ++sLS G++ r ala +  +  +ll+lDEpt+
  KIR62901.1 460 VLRTAASLSPGERTRAALALLQGRGVNLLVLDEPTN 495
                 55889******************************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.5e-06   0.00059       2      24 ..      33      55 ..      32      83 .. 0.79
   2 !   12.1   0.2   0.00032      0.13     233     278 ..     155     200 ..     124     218 .. 0.74
   3 !   17.5   0.8   6.9e-06    0.0028       3      20 ..     379     396 ..     378     419 .. 0.87
   4 !   13.5   0.2   0.00012     0.047     230     298 ..     460     522 ..     419     527 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.5e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldllar 24
                 +l+G Ng+GKS+LL++l +l  
  KIR62901.1 33 VGLVGVNGAGKSTLLRTLAGLLP 55
                68*****************9954 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00032
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHP...kllrrl 278
                 p++ lS G+   ++l+++ll++    +++l+DEp n L+     +l+r+
  KIR62901.1 155 PMTALSGGQAARAGLASLLLSRY---DVFLLDEPTNDLDLaglDRLERF 200
                 78889999999999999999999...9***********99444444444 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 6.9e-06
      AAA_21   3 vliGpNgsGKSnLLdald 20 
                 +++G+NgsGK++LL al 
  KIR62901.1 379 AITGANGSGKTTLLAALL 396
                 79**************94 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 0.00012
      AAA_21 230 qelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                   ++a++lS G +   a l++l  +     ll++DEp n+L+ ++++ l    ++l+   + ++l+TH+
  KIR62901.1 460 VLRTAASLSPGERTR-AALALLQGRGV--NLLVLDEPTNHLDLAAIEQLE---SALAGYPGTLLLVTHD 522
                 456688889999988.44444443333..8*************8888775...3334455677777776 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.018       7.2      27      44 ..      33      50 ..      26      60 .. 0.83
   2 ?    3.6   0.0     0.096        38     136     205 ..     158     221 ..      98     236 .. 0.83
   3 !   12.8   0.0   0.00015     0.059      27      45 ..     378     396 ..     364     404 .. 0.84
   4 !   11.4   0.0   0.00038      0.15     135     213 ..     458     537 ..     434     544 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.018
                EEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 27 taivGpNGSGKsnlldAi 44
                  +vG NG+GKs ll  +
  KIR62901.1 33 VGLVGVNGAGKSTLLRTL 50
                568**********99776 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.096
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                 +LSgG+ + + la l+     ++  ++llDe    LD +   ++ +++   +  a  + +s+++e+l++ 
  KIR62901.1 158 ALSGGQAARAGLASLL----LSRYDVFLLDEPTNDLDLAGLDRLERFVTGLR--AGTVLVSHDREFLTRT 221
                 7999999999887653....5566689****************999999988..7778888888877655 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 0.00015
                 EEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAil 45 
                  ai+G+NGSGK+ ll A+l
  KIR62901.1 378 VAITGANGSGKTTLLAALL 396
                 68***************94 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.00038
                 T.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEE CS
                 x.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtk 213
                 +       +LS Ge+t +alaLl    + +   l +lDe   +LD + ++++ + l        ++ ++++++ml  +  + +v+ 
  KIR62901.1 458 DhvlrtaaSLSPGERTRAALALL----QGRGVNLLVLDEPTNHLDLAAIEQLESALAGYP--GTLLLVTHDRRMLDAVAVNRRVRV 537
                 444444448************99....8999************************99887..779999999999998876666655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   0.00012     0.049      12      43 ..      20      51 ..      18      58 .. 0.77
   2 !   19.5   0.0   1.5e-06   0.00058      15      42 ..     368     395 ..     357     399 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00012
      AAA_29 12 fdghtieidlkgatlltGpsGsGKSTllDAiq 43
                f+g ++ + + +++ l+G +G+GKSTll  ++
  KIR62901.1 20 FSGLDLVVAPGDVVGLVGVNGAGKSTLLRTLA 51
                566666677777889************96655 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.5e-06
      AAA_29  15 htieidlkgatlltGpsGsGKSTllDAi 42 
                  t++id ++ + +tG++GsGK+Tll A+
  KIR62901.1 368 VTLQIDWADRVAITGANGSGKTTLLAAL 395
                 6788999999***************776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0019      0.74      10      33 ..      35      58 ..      30     113 .. 0.81
   2 !   22.9   0.0   2.1e-07   8.2e-05       9     127 ..     379     518 ..     375     524 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0019
      AAA_22 10 vtGesGtGKTtllrrlleqldeea 33
                ++G  G+GK+tllr+l+  l+ ea
  KIR62901.1 35 LVGVNGAGKSTLLRTLAGLLPVEA 58
                799**************9996554 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 2.1e-07
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee...................erpevvfvtlpsstsskdllrellralglelka.....erlsseelleale 83 
                 ++tG  G+GKTtll+ ll +l+ +a ++                    e+p +  + l++++ s   +r ll ++gl++++     + ls  e  +a  
  KIR62901.1 379 AITGANGSGKTTLLAALLGRLPLDAGHASlgpgvvvgevdqarglflgEQPLLDAFRLAVPELSPADARTLLAKFGLRADHvlrtaASLSPGERTRAAL 477
                 89**************************99999999999988888885444443777777774444457778888887777888899999999999999 PP

      AAA_22  84 qalraravielliiDEaqh.lrseealeeLrsllnlsrkgvqliL 127
                   l+ r+v  ll++DE  + l   +a+e+L s l    ++ +l+L
  KIR62901.1 478 ALLQGRGV-NLLVLDEPTNhL-DLAAIEQLESALA--GYPGTLLL 518
                 9*******.*******88889.8888888876666..66666665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0    0.0013      0.51      21      39 ..      32      50 ..      22      54 .. 0.85
   2 ?   -1.8   0.2       9.5   3.8e+03      88     167 ..     297     316 ..     241     338 .. 0.49
   3 !   19.0   0.0     4e-06    0.0016      23      39 ..     379     395 ..     370     398 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0013
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                ++ ++G NGaGK+T+l+ +
  KIR62901.1 32 VVGLVGVNGAGKSTLLRTL 50
                56789***********876 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 9.5
      AAA_23  88 rsiererelskkkgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefelkdkkerleelekeleeled 167
                 ++++  r ++++k                                                               ++ +
  KIR62901.1 297 KNVKHHRGETSEKQA------------------------------------------------------------AKARQ 316
                 222222222222222............................................................22222 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 4e-06
      AAA_23  23 lItGpNGaGKTTildAi 39 
                 +ItG NG+GKTT+l A+
  KIR62901.1 379 AITGANGSGKTTLLAAL 395
                 7**************98 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.1e-05     0.012       1      81 [.      33     111 ..      33     196 .. 0.87
   2 ?   -0.9   0.1       3.6   1.4e+03      32      82 ..     266     316 ..     212     342 .. 0.60
   3 !    8.0   0.0    0.0067       2.7       1      21 [.     378     398 ..     378     407 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.1e-05
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---CCS...SSEEEET-EB--CHHHHHHHHHHHHHHHT CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeaseravkeelkekekkledfsevreeieketekiag 81 
                 + +vG   +GKS++l  L g  +lp++++ +T  p + + g+ +++ er+  e+++++ ++ + +++ + +++++te ++ 
  KIR62901.1  33 VGLVGVNGAGKSTLLRTLAG--LLPVEAGSVTLSPPTATVGHLPQEPERRPGETVRDFLARRTGVTAAQAALDAATEALTA 111
                 679****************9..68*********************999**********99999999999999998888773 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 3.6
                 --S-EEEEECCT---CCS...SSEEEET-EB--CHHHHHHHHHHHHHHHTS CS
   Dynamin_N  32 Trrplelqlgeeeeaseravkeelkekekkledfsevreeieketekiaga 82 
                 Tr+ le + +++    e+ v++  ++ ++ ++++++ r e +++++ +a++
  KIR62901.1 266 TRAALEARARTQRAWMEKGVRNARRKATDGDKNVKHHRGETSEKQAAKARQ 316
                 444444444444443333333333333444444444444444444444443 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0067
                 EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlge 21 
                 +a+ G+  sGK+++l aLlg+
  KIR62901.1 378 VAITGANGSGKTTLLAALLGR 398
                 799*****************8 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   6.5e-06    0.0026       1      66 [.      32     100 ..      32     150 .. 0.70
   2 !   11.3   0.0   0.00074      0.29       4      25 ..     380     403 ..     378     495 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6.5e-06
      AAA_33   1 lvllvGlpGsGKstlaerllkklg....avllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarka 66 
                 +v lvG++G+GKstl++ l+  l+     v+ls +t+   + ++++++     +v+d l +++  +a++a
  KIR62901.1  32 VVGLVGVNGAGKSTLLRTLAGLLPveagSVTLSPPTATVGHLPQEPERRPG-ETVRDFLARRTGVTAAQA 100
                 6779***************999999998999****9777666644443322.223333333333333222 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00074
      AAA_33   4 lvGlpGsGKstlaerllkklg..a 25 
                 + G++GsGK+tl+  ll +l+  a
  KIR62901.1 380 ITGANGSGKTTLLAALLGRLPldA 403
                 67**************99888651 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0    0.0002     0.081       2      21 ..      33      52 ..      32      78 .. 0.79
   2 !   10.4   0.1    0.0013      0.51       1      22 [.     377     398 ..     377     411 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0002
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                v++vG   +GKStL+++l g
  KIR62901.1 33 VGLVGVNGAGKSTLLRTLAG 52
                89****************98 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0013
                 EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge 22 
                 +vai G   +GK+tL+ al+g+
  KIR62901.1 377 RVAITGANGSGKTTLLAALLGR 398
                 69*****************997 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1    0.0016      0.63       2      23 ..      32      53 ..      31      61 .. 0.87
   2 !   13.7   0.0   0.00011     0.045       2      21 ..     377     396 ..     376     402 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0016
                CEEEEC-TTTCHHHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqklala 23
                +v l G +G GK+tLl+ la +
  KIR62901.1 32 VVGLVGVNGAGKSTLLRTLAGL 53
                67899*************9865 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 0.00011
                 CEEEEC-TTTCHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkla 21 
                  v+++G++GsGKTtLl+ l 
  KIR62901.1 377 RVAITGANGSGKTTLLAALL 396
                 699*************9885 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0039       1.6       1      22 [.      33      54 ..      33     104 .. 0.81
   2 !   12.3   0.0   0.00046      0.18       1      42 [.     378     428 ..     378     450 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0039
      AAA_18  1 IlltGtpGvGKttlakeLskrl 22
                ++l G+ G+GK+tl + L+ +l
  KIR62901.1 33 VGLVGVNGAGKSTLLRTLAGLL 54
                6899*************98665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00046
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.........gvnlrdvakenglllevd 42 
                 +++tG+ G+GKttl  +L  rl +         gv++++v + +gl l+++
  KIR62901.1 378 VAITGANGSGKTTLLAALLGRLPLdaghaslgpGVVVGEVDQARGLFLGEQ 428
                 78*************999555444666666777777777777776665555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.3    0.0036       1.5       2      20 ..      32      50 ..      31      59 .. 0.89
   2 !   14.7   0.1   4.4e-05     0.017       4      37 ..     379     418 ..     377     422 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0036
                EEEEEESTTCCHHHHHHHH CS
        cobW  2 vtvltGflGsGKTtLlnhl 20
                v++l+G  G+GK+tLl++l
  KIR62901.1 32 VVGLVGVNGAGKSTLLRTL 50
                7899************998 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 4.4e-05
                 EEEESTTCCHHHHHHHHH......CT--SS-EEEEESS-S CS
        cobW   4 vltGflGsGKTtLlnhll......enraglklavivNefg 37 
                  +tG  GsGKTtLl +ll      + +a+l   v+v+e+ 
  KIR62901.1 379 AITGANGSGKTTLLAALLgrlpldAGHASLGPGVVVGEVD 418
                 69****************9998887788888889999876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.7   8.2e-06    0.0033      17      82 ..      30      98 ..      23     215 .. 0.90
   2 !    7.8   1.6     0.006       2.4      21      39 ..     378     396 ..     374     531 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.2e-06
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk....g 82
                g  v+ l+G+ G+GK+t+l++l+ ++  + g+v +  pt+++ +  +e    +++t+  +l r +    +
  KIR62901.1 30 G-DVVGLVGVNGAGKSTLLRTLAGLLPVEAGSVTLSPPTATVGHLPQEPERRPGETVRDFLARRTgvtaA 98
                4.4999***********************99****99999999998888889999999999887766552 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.006
      AAA_30  21 avltGpAGtGKttalkalr 39 
                 +++tG+ G+GKtt+l+al 
  KIR62901.1 378 VAITGANGSGKTTLLAALL 396
                 579*************983 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9  12.5   2.8e-06    0.0011       2      79 ..     229     333 ..     228     340 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.8e-06
  ABC_tran_Xtn   2 elengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfraka...........................kkakqaqsrekaLekle 71 
                   +l+++ +++Y G Y +ylee+e +++++++++e+  + ++ le+  +  ra+                            k+a++a++  + +e+le
    KIR62901.1 229 DLHQQLVRHYGGGYAAYLEEREVARRHARAEFEEYADTRAALEARARTQRAWMekgvrnarrkatdgdknvkhhrgetseKQAAKARQTDRLIERLE 325
                   799999*********************************************9999***********************9999999999999****** PP

  ABC_tran_Xtn  72 kiekpeek 79 
                    +e+p+++
    KIR62901.1 326 VVEEPRKE 333
                   *****433 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1    0.0007      0.28     100     129 ..      31      60 ..      20      65 .. 0.82
   2 ?    7.2   0.0     0.011       4.5     102     129 ..     378     405 ..     367     411 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0007
                  SEEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktge 129
                  +++ lvG  G+GKStL+ +l++ l ++ g+
   KIR62901.1  31 DVVGLVGVNGAGKSTLLRTLAGLLPVEAGS 60 
                  67889***************9877666665 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.011
                  EEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelktge 129
                  +++ G  G GK+tL+ all++l l  g+
   KIR62901.1 378 VAITGANGSGKTTLLAALLGRLPLDAGH 405
                  6789**************9998776665 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00032      0.13       5      65 ..      37      99 ..      35     112 .. 0.77
   2 ?    5.8   0.1     0.026        10       3      21 ..     380     398 ..     378     407 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00032
  Viral_helicase1  5 GvpGcGKStlirkllrtsliltvnrptaelltegk....pklpnlsvrtvdsflmalvkstkgki 65
                     Gv G+GKStl+r+l+   l + +++ t    t+ +    ++++++ ++tv++fl  ++   ++  
       KIR62901.1 37 GVNGAGKSTLLRTLAGL-LPVEAGSVTLSPPTATVghlpQEPERRPGETVRDFLARRTGV-TAAQ 99
                     999************99.666666666666666666687888899999999999988765.4555 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.026
  Viral_helicase1   3 vhGvpGcGKStlirkllrt 21 
                      + G+ G+GK+tl+  ll  
       KIR62901.1 380 ITGANGSGKTTLLAALLGR 398
                      89***********998865 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.2    0.0013      0.53      18      37 ..      31      50 ..      25      56 .. 0.85
   2 ?    1.4   3.4      0.11        43     637     715 ..     247     324 ..     229     351 .. 0.54
   3 !   13.4   0.1   2.6e-05      0.01      12      35 ..     370     393 ..     360     396 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0013
     DUF3584 18 ghtnieGtNaaGKTtLlrLi 37
                + + ++G+N+aGK tLlr++
  KIR62901.1 31 DVVGLVGVNGAGKSTLLRTL 50
                567899************86 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
     DUF3584 637 eeakravaeaatalknardtlerlqnekesekdklekaiaerkqqaeeqlqkldaqlkqleeqqkaaleelkedlseer 715
                 ee++ a  +a++++++  dt+  l+   ++++  +ek + +++++a    +++++  +   e+ +aa++ + ++l e+ 
  KIR62901.1 247 EEREVARRHARAEFEEYADTRAALEARARTQRAWMEKGVRNARRKATDGDKNVKHHRGETSEK-QAAKARQTDRLIERL 324
                 444444455555555555555555555555555555555555555554444444444443333.223333333333322 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 2.6e-05
     DUF3584  12 aeldldghtnieGtNaaGKTtLlr 35 
                  ++d  +++ i G+N++GKTtLl 
  KIR62901.1 370 LQIDWADRVAITGANGSGKTTLLA 393
                 478999****************95 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1    0.0023      0.91       3      32 ..      32      61 ..      31      65 .. 0.81
   2 !    8.4   0.1    0.0038       1.5       4      22 ..     378     396 ..     375     408 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0023
                EEEEEESTTSSHHHHHHHHHHHHHHTTS-E CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkegkkv 32
                v+ lvG++GaGK t l  La ll  e+ +v
  KIR62901.1 32 VVGLVGVNGAGKSTLLRTLAGLLPVEAGSV 61
                5679***************98887665555 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0038
                 EEEEESTTSSHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLa 22 
                 +++ G +G+GKTt la L 
  KIR62901.1 378 VAITGANGSGKTTLLAALL 396
                 6799***********9885 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.036        14      35      59 ..      25      50 ..      21      58 .. 0.79
   2 !   11.3   0.0   0.00039      0.15      35      60 ..     371     396 ..     363     399 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.036
                  GGGS-.SEE.EE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE 35 lkkmashll.vaGatgsGKStalntL 59
                  l+++++ ++ ++G  g GKSt l+tL
    KIR62901.1 25 LVVAPGDVVgLVGVNGAGKSTLLRTL 50
                  555554444379*************8 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00039
                   GGGS-.SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  35 lkkmashllvaGatgsGKStalntLi 60 
                   ++ +a  + + Ga gsGK+t l +L+
    KIR62901.1 371 QIDWADRVAITGANGSGKTTLLAALL 396
                   456777899**************997 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1     0.011       4.4       5      34 ..      33      59 ..      30      72 .. 0.80
   2 !    9.4   0.0     0.002      0.79       4      22 ..     377     395 ..     375     411 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.011
      AAA_24  5 iliyGpsgiGKTtlakelgpkplfidtekG 34
                + ++G +g+GK+tl+++l   + ++ +e+G
  KIR62901.1 33 VGLVGVNGAGKSTLLRTL---AGLLPVEAG 59
                6799*************9...555555555 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.002
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 +++i+G +g+GKTtl++ l
  KIR62901.1 377 RVAITGANGSGKTTLLAAL 395
                 799************9987 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   3.8    0.0079       3.2      26     107 ..      32     149 ..      17     212 .. 0.51
   2 ?   -1.7   2.1       8.4   3.3e+03      65     107 ..     234     302 ..     208     359 .. 0.58
   3 !   18.9   0.1     4e-06    0.0016      27     124 ..     378     480 ..     374     495 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0079
      AAA_16  26 lvllsGesGvGKsslvrellralekd..........ggiflrgkcdqlesa..........ipy...salaqalareellrqlldeaesaeleawrekl 101
                 +v l+G  G GKs+l+r+l+  l  +              + g+  q ++           + +   ++ aqa+   +  ++ l++ ++ + +a++e+l
  KIR62901.1  32 VVGLVGVNGAGKSTLLRTLAGLLPVEagsvtlspptA---TVGHLPQEPERrpgetvrdflA-RrtgVTAAQAA--LDAATEALTAGAAGSDDAYAEAL 124
                 67799**************986666644444433320...3333333322222223333321.12222233333..34444444555555666666666 PP

      AAA_16 102 eeala...................a 107
                 e++l+                    
  KIR62901.1 125 ERWLGlggadleeraeqvaaelglT 149
                 6666655555555444444444441 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 8.4
      AAA_16  65 saipysa.laqalareellrqlldeaesaeleawrekleeala..........................a 107
                   ++y   +a +l+++e+ r  +++ e  e ++ r++le++++                           
  KIR62901.1 234 LVRHYGGgYAAYLEEREVARRHARA-EFEEYADTRAALEARARtqrawmekgvrnarrkatdgdknvkhH 302
                 3355666677777665555555544.44455555555555554555555555555555555555544440 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 4e-06
      AAA_16  27 vllsGesGvGKsslvrellralekd......ggiflrgkcdqlesaipy..salaqalareellrqlldeaesaeleawrekleealaavpelagaeas 117
                 v ++G+ G+GK++l+ +ll +l  d      g  ++ g+ dq  +++ +  ++l++a+ r   + +l  +++ ++l+ +  + + +l+ +++l++ e++
  KIR62901.1 378 VAITGANGSGKTTLLAALLGRLPLDaghaslGPGVVVGEVDQA-RGLFLgeQPLLDAF-R-LAVPELSPADARTLLAKFGLRADHVLRTAASLSPGERT 473
                 789*****************99999777777777788888887.5544476779****.7.78888888888889999999999999999999999887 PP

      AAA_16 118 rllellk 124
                 r + +l 
  KIR62901.1 474 RAALALL 480
                 7666654 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1      0.03        12       1      23 [.      32      54 ..      32      63 .. 0.86
   2 !   10.1   0.0    0.0014      0.58       2      23 ..     378     399 ..     377     407 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.03
        MobB  1 vlgivgksgsGKTtLleklipel 23
                v+g+vg +g+GK tLl  l   l
  KIR62901.1 32 VVGLVGVNGAGKSTLLRTLAGLL 54
                689*************9997666 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0014
        MobB   2 lgivgksgsGKTtLleklipel 23 
                 ++i+g +gsGKTtLl  l+  l
  KIR62901.1 378 VAITGANGSGKTTLLAALLGRL 399
                 6899*************99776 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1    0.0028       1.1      18      48 ..      27      61 ..      10      73 .. 0.78
   2 ?    6.6   0.0     0.018       7.2      19      43 ..     375     399 ..     351     407 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0028
                H..TEEEEEEESTTSSHHHHHHHHHHHTT--..-- CS
        TsaE 18 l..gdvilLeGdLGaGKTtlvrglakalgve..ev 48
                +  gdv+ L G  GaGK+tl r la  l ve  +v
  KIR62901.1 27 VapGDVVGLVGVNGAGKSTLLRTLAGLLPVEagSV 61
                134889******************99998866633 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.018
                 TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakal 43 
                 +d ++++G  G+GKTtl  +l+  l
  KIR62901.1 375 ADRVAITGANGSGKTTLLAALLGRL 399
                 45699************99998765 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0012      0.49       3      33 ..      37      67 ..      35      93 .. 0.88
   2 ?    5.0   0.0     0.042        17       2      20 ..     381     399 ..     380     406 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0012
                     ESTTSSHHHHHHHHHHHHHHTTE.EEEESSS CS
  Thymidylate_kin  3 GlDGaGKttqaellkerlkeegikvvltrep 33
                     G++GaGK+t +++l+  l+ e+ +v l+++ 
       KIR62901.1 37 GVNGAGKSTLLRTLAGLLPVEAGSVTLSPPT 67
                     9******************999876666654 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.042
                      EESTTSSHHHHHHHHHHHH CS
  Thymidylate_kin   2 EGlDGaGKttqaellkerl 20 
                       G +G+GKtt +++l  rl
       KIR62901.1 381 TGANGSGKTTLLAALLGRL 399
                      699*********9998877 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.021       8.3       4      23 ..      32      51 ..      30      64 .. 0.84
   2 !    8.0   0.0     0.007       2.8       5      23 ..     378     396 ..     376     406 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.021
      AAA_14  4 ilvitGaRrvGKTtllkqli 23
                ++ ++G+  +GK+tll++l+
  KIR62901.1 32 VVGLVGVNGAGKSTLLRTLA 51
                7899*************998 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.007
      AAA_14   5 lvitGaRrvGKTtllkqli 23 
                 ++itGa  +GKTtll  l+
  KIR62901.1 378 VAITGANGSGKTTLLAALL 396
                 68*************9886 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.021       8.3      28      43 ..      35      50 ..      28      57 .. 0.86
   2 !    8.5   0.0    0.0036       1.4      26      43 ..     378     395 ..     369     397 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.021
      AAA_15 28 liGkNnsGKSsileal 43
                l+G N++GKS++l+ l
  KIR62901.1 35 LVGVNGAGKSTLLRTL 50
                9************988 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0036
      AAA_15  26 tvliGkNnsGKSsileal 43 
                   + G+N+sGK+++l al
  KIR62901.1 378 VAITGANGSGKTTLLAAL 395
                 5788************98 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.5     0.017       6.7       4      27 ..      35      63 ..      32     119 .. 0.68
   2 ?   -1.3   0.6       5.6   2.2e+03      28      49 ..     249     273 ..     230     300 .. 0.46
   3 !   16.6   0.2   1.8e-05    0.0072       1      20 [.     377     396 ..     377     417 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.017
      AAA_28  4 itGgestGKTtlleaLa.....argypvv 27
                ++G  ++GK+tll+ La     + g +++
  KIR62901.1 35 LVGVNGAGKSTLLRTLAgllpvEAGSVTL 63
                78999***********9555554465555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 5.6
      AAA_28  28 pEaareileekl...akgedalpwv 49 
                 +E+ar+  + +    a+++ al++ 
  KIR62901.1 249 REVARRHARAEFeeyADTRAALEAR 273
                 3444444443331113333333332 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 1.8e-05
      AAA_28   1 kivitGgestGKTtlleaLa 20 
                 +++itG+ ++GKTtll+aL 
  KIR62901.1 377 RVAITGANGSGKTTLLAALL 396
                 79***************995 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0037       1.5      25      50 ..      29      54 ..      20      55 .. 0.79
   2 !    7.8   0.0    0.0057       2.3      12      47 ..     361     396 ..     356     399 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0037
      AAA_27 25 eadlhliyGpNEAGKstalrAisdll 50
                  d+  ++G N AGKst+lr +  ll
  KIR62901.1 29 PGDVVGLVGVNGAGKSTLLRTLAGLL 54
                55666689************998886 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0057
      AAA_27  12 GkftdrsldfsaeeadlhliyGpNEAGKstalrAis 47 
                 G+ft   ++++ + ad   i G+N +GK+t+l+A+ 
  KIR62901.1 361 GSFTLGPVTLQIDWADRVAITGANGSGKTTLLAALL 396
                 7788888888888888899**************985 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2      0.17        69       2      23 ..      33      54 ..      32      62 .. 0.83
   2 !   11.0   0.0   0.00076       0.3       1      23 [.     377     399 ..     377     409 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.17
                EEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlell 23
                v + G  G GK+Tl++ ++ ll
  KIR62901.1 33 VGLVGVNGAGKSTLLRTLAGLL 54
                568899*********9998877 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00076
                 EEEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlell 23 
                 +v+iTG  G+GKtTl+  +l  l
  KIR62901.1 377 RVAITGANGSGKTTLLAALLGRL 399
                 689************99887665 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.2    0.0095       3.8      21      38 ..      31      48 ..      23      52 .. 0.88
   2 ?    6.5   0.0     0.011       4.3      23      40 ..     378     395 ..     371     409 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0095
                EEEEEEESTTSSHHHHHH CS
      NB-ARC 21 lvvalvGmgGvGKttlak 38
                +vv+lvG  G GK+tl++
  KIR62901.1 31 DVVGLVGVNGAGKSTLLR 48
                69**************87 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.011
                 EEEEESTTSSHHHHHHHH CS
      NB-ARC  23 valvGmgGvGKttlakqi 40 
                 va+ G  G+GKttl++  
  KIR62901.1 378 VAITGANGSGKTTLLAAL 395
                 89************9865 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.3   0.00059      0.23      30      53 ..      31      54 ..      12      63 .. 0.85
   2 ?   -1.6   0.5       2.7   1.1e+03     182     182 ..     311     311 ..     248     361 .. 0.55
   3 !    7.8   0.0    0.0036       1.4      29      53 ..     375     399 ..     365     410 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00059
                EEEEEEE-TTSSHHHHHHHHHHHH CS
        MeaB 30 qvvGltGvPGaGkstlvealglel 53
                 vvGl Gv GaGkstl+  l+  l
  KIR62901.1 31 DVVGLVGVNGAGKSTLLRTLAGLL 54
                69***************9987655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.7
                 H CS
        MeaB 182 a 182
                 a
  KIR62901.1 311 A 311
                 2 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0036
                 SEEEEEEE-TTSSHHHHHHHHHHHH CS
        MeaB  29 aqvvGltGvPGaGkstlvealglel 53 
                 a +v +tG  G+Gk tl+ al  +l
  KIR62901.1 375 ADRVAITGANGSGKTTLLAALLGRL 399
                 889***************9987655 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0027       1.1      15      48 ..      23      56 ..       9     102 .. 0.83
   2 ?    3.8   0.1     0.082        33      25      47 ..     378     400 ..     372     411 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0027
  Mg_chelatase 15 leiaaaGgHnlllvGppGsGKtmlakrlpsllpp 48
                  l++ +a g  + lvG  G+GK+ l + l++llp 
    KIR62901.1 23 LDLVVAPGDVVGLVGVNGAGKSTLLRTLAGLLPV 56
                  6666777778889*******************96 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.082
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllp 47 
                   + ++G+ GsGKt l ++l + lp
    KIR62901.1 378 VAITGANGSGKTTLLAALLGRLP 400
                   6689********99999988777 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.3   5.3e+02     136     154 ..      37      55 ..      26      63 .. 0.82
   2 ?   11.8   0.0   0.00023     0.092     132     154 ..     378     400 ..     368     406 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.3
       T2SSE 136 GgTgsGKttllyallkein 154
                 G  g GK+tll +l   ++
  KIR62901.1  37 GVNGAGKSTLLRTLAGLLP 55 
                 7889*******99988776 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00023
       T2SSE 132 ilvsGgTgsGKttllyallkein 154
                 + ++G+ gsGKttll all  ++
  KIR62901.1 378 VAITGANGSGKTTLLAALLGRLP 400
                 569****************9886 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2     0.042        17      28      48 ..      32      51 ..      28      60 .. 0.79
   2 ?    0.5   0.0       1.1   4.4e+02      21      37 ..     149     165 ..     146     184 .. 0.80
   3 ?    6.8   0.1     0.013       5.2      30      49 ..     379     398 ..     368     406 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.042
                HHHHHS--SHHHHHHHHHHHH CS
        MukB 28 vttlsGgnGaGksttmaafvt 48
                v  l G nGaGkst + ++ +
  KIR62901.1 32 VVGLVGVNGAGKSTLLRTL-A 51
                67899********987654.3 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.1
                 EE-HHHHHHHHHS--SH CS
        MukB  21 tfdldelvttlsGgnGa 37 
                 t dld+ +t+lsGg  a
  KIR62901.1 149 TVDLDHPMTALSGGQAA 165
                 689**********9876 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.013
                 HHHS--SHHHHHHHHHHHHH CS
        MukB  30 tlsGgnGaGksttmaafvta 49 
                 ++ G+nG+Gk+t +aa++  
  KIR62901.1 379 AITGANGSGKTTLLAALLGR 398
                 789************99865 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2    0.0065       2.6       4      30 ..      35      61 ..      32      71 .. 0.82
   2 ?    4.2   0.0       0.1        41       3      23 ..     379     399 ..     377     440 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0065
                EE--SSSSHHHHHHHGGGGBS--EEEE CS
       AAA_5  4 LvGppGtgKselaerlaaalnreveyv 30
                LvG  G gKs+l + la +l  e   v
  KIR62901.1 35 LVGVNGAGKSTLLRTLAGLLPVEAGSV 61
                9*****************996655444 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.1
                 EEE--SSSSHHHHHHHGGGGB CS
       AAA_5   3 lLvGppGtgKselaerlaaal 23 
                  + G+ G+gK++l   l+ +l
  KIR62901.1 379 AITGANGSGKTTLLAALLGRL 399
                 679**********99888776 PP

>> DUF4110  Domain of unknown function (DUF4110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.017       6.6       6      31 ..      75     101 ..      71     127 .. 0.76
   2 ?    7.2   6.4     0.013       5.3      21      86 ..     274     340 ..     271     347 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.017
     DUF4110   6 slptPrpgEslrdFfaR.TseeWqela 31 
                 ++p  rpgE++rdF aR T+ +  ++a
  KIR62901.1  75 QEPERRPGETVRDFLARrTGVTAAQAA 101
                 567789*********972555555555 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.013
     DUF4110  21 aRTseeWqelaieslkekgaek.kseKelkkeafelAeerywelrpvLeelraledeqeeagigevv 86 
                 aRT+  W e+ ++++++k ++  k++K+ + e  e   ++ ++  +++e+l+ +e+ ++e + + ++
  KIR62901.1 274 ARTQRAWMEKGVRNARRKATDGdKNVKHHRGETSEKQAAKARQTDRLIERLEVVEEPRKEWELRMEI 340
                 6************9998766668999999999987655555555556*********99887766655 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.065        26       2      23 ..      36      57 ..      35      69 .. 0.84
   2 ?    5.7   0.0     0.028        11       1      19 [.     380     398 ..     380     406 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.065
  ATP_bind_1  2 vGpaGsGKttfvgalseilelr 23
                vG+ G+GK+t+ ++l+ +l+ +
  KIR62901.1 36 VGVNGAGKSTLLRTLAGLLPVE 57
                89***********998877755 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.028
  ATP_bind_1   1 vvGpaGsGKttfvgalsei 19 
                 ++G  GsGKtt+  al   
  KIR62901.1 380 ITGANGSGKTTLLAALLGR 398
                 689*********9998755 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2      0.47   1.9e+02      27      44 ..      34      51 ..      31      60 .. 0.88
   2 ?    0.8   0.1       1.1   4.2e+02      89     171 ..     250     323 ..     206     344 .. 0.63
   3 ?    9.1   0.1    0.0032       1.3      14      47 ..     368     399 ..     361     408 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.47
       DUF87 27 AilgsTGsGKSntvavLl 44
                + +g  G+GKS++ + L 
  KIR62901.1 34 GLVGVNGAGKSTLLRTLA 51
                788999*******99885 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 1.1
       DUF87  89 elkinpwsldpeelldlleeddkpaaavqrsvleealdqakakeekeklssdepveklleelkkekeelrklknqaiarlldk 171
                 e+  + ++ ++ee++d      ++ a +qr+ +e+ +++a++    + +++d+ v++ + e+     e + +k ++  rl+++
  KIR62901.1 250 EVARRHARAEFEEYADTRAA-LEARARTQRAWMEKGVRNARR----KATDGDKNVKHHRGETS----EKQAAKARQTDRLIER 323
                 56666666777777777777.444444588888988888875....44444444444444444....3333333333333333 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0032
       DUF87  14 vyldlnklvtrHlAilgsTGsGKSntvavLleel 47 
                 v l ++     ++Ai g  GsGK+++ a Ll +l
  KIR62901.1 368 VTLQIDW--ADRVAITGANGSGKTTLLAALLGRL 399
                 5555532..4789*****************9877 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.066        26       1      24 [.      32      55 ..      32      72 .. 0.84
   2 ?    5.0   0.0     0.046        18       2      20 ..     378     396 ..     378     420 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.066
         PRK  1 vIgvagsSGaGkttvarklekifg 24
                v+g+ g  GaGk+t+ r+l  ++ 
  KIR62901.1 32 VVGLVGVNGAGKSTLLRTLAGLLP 55
                7899**************988776 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.046
         PRK   2 IgvagsSGaGkttvarkle 20 
                 ++++g+ G+Gktt+ ++l 
  KIR62901.1 378 VAITGANGSGKTTLLAALL 396
                 58***********988775 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.064        25       3      25 ..      35      57 ..      33      84 .. 0.81
   2 ?    5.2   0.1     0.066        26       3      22 ..     380     399 ..     378     427 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.064
                EESSTTSSHHHHHHHHHHHHTHE CS
         AAA  3 lyGppGtGKTllakavakelgve 25
                l+G  G GK++l + +a  l ve
  KIR62901.1 35 LVGVNGAGKSTLLRTLAGLLPVE 57
                89**************9987544 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.066
                 EESSTTSSHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakel 22 
                 ++G  G GKT+l  a+   l
  KIR62901.1 380 ITGANGSGKTTLLAALLGRL 399
                 789**********9998775 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.13        53      27      58 ..      24      55 ..      20      67 .. 0.81
   2 ?    5.3   0.0     0.032        13      34      58 ..     376     400 ..     368     407 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.13
       AAA_7 27 elllknkkpvllvGptGtGKtviikdllkkld 58
                +l+++ +  v lvG  G GK++++++l   l+
  KIR62901.1 24 DLVVAPGDVVGLVGVNGAGKSTLLRTLAGLLP 55
                66777778889************998766555 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.032
       AAA_7  34 kpvllvGptGtGKtviikdllkkld 58 
                   v ++G  G+GKt+++  ll +l+
  KIR62901.1 376 DRVAITGANGSGKTTLLAALLGRLP 400
                 57899************99998887 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       3.7   1.5e+03      17      33 ..      34      50 ..      25      54 .. 0.87
   2 ?    9.0   0.0    0.0021      0.84      15      36 ..     377     398 ..     372     405 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.7
     Pox_A32 17 alvGgsGsGktvyLlsL 33
                 lvG  G+Gk + L+ L
  KIR62901.1 34 GLVGVNGAGKSTLLRTL 50
                599*********99887 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0021
     Pox_A32  15 rlalvGgsGsGktvyLlsLlrt 36 
                 r+a++G  GsGkt+ L +Ll +
  KIR62901.1 377 RVAITGANGSGKTTLLAALLGR 398
                 89****************9976 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.038        15       1      16 [.      36      51 ..      36      63 .. 0.85
   2 ?   -1.0   0.4       5.5   2.2e+03      39      75 ..     285     320 ..     247     358 .. 0.56
   3 ?    6.5   0.1     0.027        11       1      19 [.     381     399 ..     381     424 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.038
                EE-TTSSHHHHHHHHH CS
      AAA_17  1 lGgPGsGKgtqceklv 16
                +G+ G+GK+t++++l+
  KIR62901.1 36 VGVNGAGKSTLLRTLA 51
                79**********9987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 5.5
                 SHSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEE CS
      AAA_17  39 lakardemrklpleekkelqkeaaekiaeeakkkgvl 75 
                   +ar +  ++++++k++ + e  ek a +a++++ l
  KIR62901.1 285 VRNARRKATDGDKNVKHH-RGETSEKQAAKARQTDRL 320
                 233333333333333332.222333333333444444 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.027
                 EE-TTSSHHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky 19 
                 +G  GsGK+t+++ l  ++
  KIR62901.1 381 TGANGSGKTTLLAALLGRL 399
                 699*********9998776 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.031        12      23      39 ..      37      53 ..      35      65 .. 0.88
   2 ?   -3.0   1.4         5     2e+03     420     450 ..     280     310 ..     241     336 .. 0.40
   3 ?    4.6   0.0     0.025        10      21      32 ..     380     391 ..     375     403 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.031
      AAA_13 23 GwNGaGKTtLSrllrsl 39
                G NGaGK+tL r l+ l
  KIR62901.1 37 GVNGAGKSTLLRTLAGL 53
                99********9999876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5
      AAA_13 420 klekaieklekelkeeeaelkkleeeikeLe 450
                  +ek + ++ +++++  +++k  ++e +e++
  KIR62901.1 280 WMEKGVRNARRKATDGDKNVKHHRGETSEKQ 310
                 1222222222222222222222222222222 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.025
      AAA_13  21 iYGwNGaGKTtL 32 
                 i G+NG+GKTtL
  KIR62901.1 380 ITGANGSGKTTL 391
                 569********9 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1     0.015       6.1      19      49 ..      33      63 ..      30      68 .. 0.80
   2 ?    5.5   0.1     0.022       8.9      20      40 ..     379     399 ..     376     411 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.015
  Zeta_toxin 19 illgGqpGAGKselaellkdelerqgnvvrl 49
                + l+G  GAGKs+l++ l+  l  + + v+l
  KIR62901.1 33 VGLVGVNGAGKSTLLRTLAGLLPVEAGSVTL 63
                56899***********999887766666665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.022
  Zeta_toxin  20 llgGqpGAGKselaellkdel 40 
                  + G+ G+GK++l+++l  +l
  KIR62901.1 379 AITGANGSGKTTLLAALLGRL 399
                 688***********9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              45  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.48
# Mc/sec: 3396.23
//
Query:       KIR62902.1  [L=122]
Description: tetratricopeptide domain-containing protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-14   53.2   1.3    4.2e-13   49.6   0.2    2.3  2  TPR_19           Tetratricopeptide repeat
    1.2e-11   44.4   5.2    3.5e-05   24.3   0.8    3.1  3  TPR_14           Tetratricopeptide repeat
    8.5e-10   39.1  15.6    4.8e-05   23.9   3.8    2.4  3  TPR_16           Tetratricopeptide repeat
    1.4e-08   34.8   0.0      3e-08   33.8   0.0    1.6  2  ANAPC3           Anaphase-promoting complex, cyclosome, subun
    4.3e-08   32.7   0.4      0.024   14.7   0.0    3.2  3  TPR_2            Tetratricopeptide repeat
    5.7e-08   32.9   1.9      0.079   13.6   0.2    3.9  4  TPR_6            Tetratricopeptide repeat
    7.7e-07   29.1   0.2       0.03   14.7   0.0    2.8  3  TPR_17           Tetratricopeptide repeat
    3.6e-06   27.2   3.3      0.063   13.6   0.6    3.0  2  TPR_12           Tetratricopeptide repeat
    4.4e-05   23.9   4.7     0.0044   17.5   0.5    2.1  2  BTAD             Bacterial transcriptional activator domain
    0.00022   20.6   0.6    0.00027   20.3   0.6    1.1  1  TPR_15           Tetratricopeptide repeat
    0.00025   21.0   0.0      0.015   15.5   0.0    2.9  3  TPR_8            Tetratricopeptide repeat
    0.00041   20.8   0.0      0.021   15.3   0.0    2.1  2  Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
    0.00049   20.4   1.1     0.0048   17.2   0.2    2.2  2  TPR_20           Tetratricopeptide repeat
    0.00067   19.5   3.0        1.5    9.0   0.0    3.4  3  TPR_7            Tetratricopeptide repeat
    0.00072   19.7   5.8       0.25   11.5   0.0    2.3  2  TPR_9            Tetratricopeptide repeat
     0.0021   17.9   5.3        2.2    8.3   1.0    3.2  3  TPR_10           Tetratricopeptide repeat
     0.0028   17.4   0.1        5.6    7.0   0.0    3.3  3  TPR_1            Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.014   15.0   0.1       0.11   12.1   0.0    2.2  2  HrpB1_HrpK       Bacterial type III secretion protein (HrpB1_
      0.015   15.9  11.4      0.017   15.7   0.8    3.7  3  TPR_4            Tetratricopeptide repeat
      0.023   14.4   0.3       0.12   12.1   0.3    2.1  2  TPR_21           Tetratricopeptide repeat-like domain
      0.026   14.5   0.2       0.84    9.7   0.0    2.7  3  DUF4248          Domain of unknown function (DUF4248)
      0.029   13.3   0.0      0.047   12.6   0.0    1.2  1  NatB_MDM20       N-acetyltransferase B complex (NatB) non cat
      0.032   13.9   0.0       0.28   10.9   0.0    2.5  4  TPR_11           TPR repeat
      0.047   13.8   0.6        7.8    6.7   0.0    3.3  3  Fis1_TPR_C       Fis1 C-terminal tetratricopeptide repeat
        0.1   12.1   0.0       0.12   11.8   0.0    1.2  1  SPO22            Meiosis protein SPO22/ZIP4 like


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.2   5.9e-16   4.2e-13       2      66 ..      14      78 ..      13      80 .. 0.96
   2 ?    2.5   0.1       0.3   2.2e+02       4      26 ..      84     106 ..      81     116 .. 0.72

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 5.9e-16
      TPR_19  2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlA 66
                +++gd   A++lle + +++p+n+++r lLA+a++++ ql+ Ae+ L +l + dp d +++ +l+
  KIR62902.1 14 FEMGDASGAVRLLEPIVEAEPGNSAVRQLLARAYFQTAQLNRAEEQLRELVDRDPSDHYAHHVLG 78
                79******************************************************999998775 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.3
      TPR_19   4 egdyaeAlalleqalqedpknae 26 
                 ++++a+Al++l+ a + +  n +
  KIR62902.1  84 MNRPADALRHLRIAAAMYSTNTD 106
                 67889998888887777766655 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   5.3e-07   0.00038       5      43 ..       7      45 ..       3      46 .. 0.94
   2 !   24.3   0.8   4.8e-08   3.5e-05       3      43 ..      39      79 ..      37      80 .. 0.94
   3 !   12.1   0.2   0.00041      0.29       5      35 ..      75     105 ..      73     114 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 5.3e-07
      TPR_14  5 lalaeallalGdpdeAiallrralalaPddaeawlllaq 43
                +++a  +++ Gd  +A++ll+ ++++ P++ +++ lla+
  KIR62902.1  7 YRRATMFFEMGDASGAVRLLEPIVEAEPGNSAVRQLLAR 45
                789999********************************8 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 4.8e-08
      TPR_14  3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43
                ++++la+a+++  ++ +A++ lr++++++P+d  a+  l++
  KIR62902.1 39 VRQLLARAYFQTAQLNRAEEQLRELVDRDPSDHYAHHVLGR 79
                6889**********************************998 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00041
      TPR_14   5 lalaeallalGdpdeAiallrralalaPdda 35 
                   l++ l++  +p++A+++lr a a + ++ 
  KIR62902.1  75 HVLGRTLERMNRPADALRHLRIAAAMYSTNT 105
                 5699******************988554444 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.6   7.1e-08   5.1e-05       2      67 ..       8      70 ..       7      71 .. 0.95
   2 !   23.9   3.8   6.8e-08   4.8e-05       3      65 ..      43     102 ..      42     105 .. 0.95
   3 !   10.7   0.2    0.0009      0.65       3      28 ..      77     102 ..      75     114 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 7.1e-08
      TPR_16  2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67
                 +a+ +++ gd   A+++le  +++    P + + + ll++a+++   l +A++++r++++ +p++
  KIR62902.1  8 RRATMFFEMGDASGAVRLLEPIVEAE---PGNSAVRQLLARAYFQTAQLNRAEEQLRELVDRDPSD 70
                6777899*******************...***********************************87 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 6.8e-08
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 lara+++  +  +A+++l+++++rd   P ++ A+  lg+ + r +r a+A+  +r a++ ++
  KIR62902.1  43 LARAYFQTAQLNRAEEQLRELVDRD---PSDHYAHHVLGRTLERMNRPADALRHLRIAAAMYS 102
                 8************************...*****************************998876 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.0009
      TPR_16   3 laraalragdyddAaaaleaalkrdp 28 
                 l+r + r ++++dA++ l++a ++++
  KIR62902.1  77 LGRTLERMNRPADALRHLRIAAAMYS 102
                 7999******************9985 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   4.2e-11     3e-08       5      80 ..      19      95 ..      15      97 .. 0.95
   2 ?   -2.2   0.0       6.9   4.9e+03      33      44 ..     101     112 ..      96     118 .. 0.61

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 4.2e-11
                HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  5 yknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80
                   A+ l+e++++ae+ ++  + llA +++++ q +rA e lr++ + +++++ ++ +++++l  +++  +A+++L 
  KIR62902.1 19 ASGAVRLLEPIVEAEPGNSAVRQLLARAYFQTAQLNRAEEQLRELvDRDPSDHYAHHVLGRTLERMNRPADALRHLR 95
                5668999*******************************************************************995 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.9
                 HHHTT-HHHHHH CS
      ANAPC3  33 lylngqykrAye 44 
                 +  n +y++A++
  KIR62902.1 101 YSTNTDYTTALR 112
                 444556777765 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.44   3.2e+02       5      25 ..       7      27 ..       7      36 .. 0.82
   2 !   12.7   0.1   0.00015      0.11       6      34 .]      42      70 ..      38      70 .. 0.93
   3 !   14.7   0.0   3.3e-05     0.024       2      33 ..      72     103 ..      71     104 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.44
       TPR_2  5 ynlGlayyklgdyeeAleafe 25
                y+++   +++gd   A++++e
  KIR62902.1  7 YRRATMFFEMGDASGAVRLLE 27
                8999999*****999999887 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00015
       TPR_2  6 nlGlayyklgdyeeAleafekAleldPnn 34
                 l++ay++  ++++A+e +++ +  dP +
  KIR62902.1 42 LLARAYFQTAQLNRAEEQLRELVDRDPSD 70
                69*************************75 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 3.3e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +a++ lG+ +++++++++Al++++ A + + +
  KIR62902.1  72 YAHHVLGRTLERMNRPADALRHLRIAAAMYST 103
                 699*********************99988766 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00095      0.68       2      24 ..       5      27 ..       4      36 .. 0.85
   2 !   13.6   0.2   0.00011     0.079       5      32 ..      42      69 ..      39      70 .. 0.91
   3 ?    3.4   0.0       0.2   1.4e+02       3      24 ..      74      95 ..      72      98 .. 0.83
   4 ?    3.7   0.0      0.16   1.2e+02       4      21 ..      94     112 ..      93     113 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00095
                HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  2 AlyklalsyrklgdtdkAleale 24
                A y++a  ++++gd++ A+++le
  KIR62902.1  5 ADYRRATMFFEMGDASGAVRLLE 27
                569******************98 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 0.00011
                HHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6  5 klalsyrklgdtdkAlealerlikeYPd 32
                +la++y+++ +  +A e l++l+++ P 
  KIR62902.1 42 LLARAYFQTAQLNRAEEQLRELVDRDPS 69
                59******55***************996 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.2
                HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  3 lyklalsyrklgdtdkAleale 24
                   l++ +++++++++Al+ l+
  KIR62902.1 74 HHVLGRTLERMNRPADALRHLR 95
                55689*****99*****99876 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.16
                 HHHHHHHHH.HHHHHHHHH CS
       TPR_6   4 yklalsyrk.lgdtdkAle 21 
                 +++a ++++  +d+++Al+
  KIR62902.1  94 LRIAAAMYStNTDYTTALR 112
                 89*******778**99986 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00048      0.34       7      34 .]      31      58 ..      29      58 .. 0.92
   2 !   14.7   0.0   4.2e-05      0.03       4      33 ..      62      91 ..      60      92 .. 0.91
   3 ?   -2.0   0.0       9.1   6.6e+03      22      33 ..     100     111 ..      97     112 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00048
      TPR_17  7 eldPnnadaynnLAelllknGdlmtArq 34
                e +P n+ + ++LA+++ +  +l +A++
  KIR62902.1 31 EAEPGNSAVRQLLARAYFQTAQLNRAEE 58
                889****************999999986 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 4.2e-05
      TPR_17  4 kaleldPnnadaynnLAelllknGdlmtAr 33
                + +++dP++ +a++ L+++l++ +++++A+
  KIR62902.1 62 ELVDRDPSDHYAHHVLGRTLERMNRPADAL 91
                67899*********************9996 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 9.1
      TPR_17  22 lllknGdlmtAr 33 
                  ++ n d+ tA+
  KIR62902.1 100 MYSTNTDYTTAL 111
                 577888888885 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.6   8.8e-05     0.063       7      75 ..       7      67 ..       3      69 .. 0.82
   2 !   12.4   0.1    0.0002      0.14      47      75 ..      73     101 ..      72     103 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.8e-05
      TPR_12  7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75
                +++a++ +++g+   A +lle  +e+      p     +++++ L+r+y+++ ++  A+e l+e ++++
  KIR62902.1  7 YRRATMFFEMGDASGAVRLLEPIVEAE-----PG---NSAVRQLLARAYFQTAQLNRAEEQLRELVDRD 67
                577888888888888888888886666.....43...4789**********************988875 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.0002
      TPR_12  47 tlrnLgrlyralgryeeAlelleealaia 75 
                 + + Lgr++++++r+++Al++l+ a a++
  KIR62902.1  73 AHHVLGRTLERMNRPADALRHLRIAAAMY 101
                 5789******************9888887 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.5   6.2e-06    0.0044      68     124 ..       9      65 ..       2      66 .. 0.91
   2 !   12.0   1.7   0.00029      0.21      82     144 ..      57     117 ..      53     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6.2e-06
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
        BTAD  68 laeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlrr 124
                 +a + +++G+a+ a++ le +v+++P + + +++l rA++++ + + A e+ ++l++
  KIR62902.1   9 RATMFFEMGDASGAVRLLEPIVEAEPGNSAVRQLLARAYFQTAQLNRAEEQLRELVD 65 
                 6667789*******************************************9999875 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00029
                 HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHH CS
        BTAD  82 laelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlrrlLaeeLgvepgpelralhee 144
                  ++l++lv+ +P +  +h  l r l r++r a+AL+  + + ++ ++   ++  ++lr+++++
  KIR62902.1  57 EEQLRELVDRDPSDHYAHHVLGRTLERMNRPADALRHLRIAAAMYSTN--TDYTTALRRVENR 117
                 56899*******************************999888888887..7777777777766 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.6   3.7e-07   0.00027     151     243 ..       8     100 ..       6     112 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.7e-07
      TPR_15 151 araelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkaraesdasLwgplaaAlllLgrpkkALeylrkqake 243
                 +ra +  + g+   A+r+++  ++++p++s++r+ l  ++  + + + + e l+++ +r  sd   + +l+  l +++rp+ AL++lr  a+ 
  KIR62902.1   8 RRATMFFEMGDASGAVRLLEPIVEAEPGNSAVRQLLARAYFQTAQLNRAEEQLRELVDRDPSDHYAHHVLGRTLERMNRPADALRHLRIAAAM 100
                 57777778899999***************************999999999**************************************98875 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       2.5   1.8e+03       5      30 ..       7      32 ..       7      36 .. 0.70
   2 !   15.5   0.0   2.1e-05     0.015       4      34 .]      40      70 ..      37      70 .. 0.92
   3 ?    1.9   0.0      0.46   3.3e+02       3      21 ..      73      91 ..      71     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 2.5
                HHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8  5 ynlgsiylklgdyeeAkeyyekalel 30
                y+ +   +++gd   A+  +e  +e+
  KIR62902.1  7 YRRATMFFEMGDASGAVRLLEPIVEA 32
                56777888999988888777755555 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 2.1e-05
                HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  4 yynlgsiylklgdyeeAkeyyekaleldpdn 34
                 ++l+++y+++ +++ A+e +++ ++ dp++
  KIR62902.1 40 RQLLARAYFQTAQLNRAEEQLRELVDRDPSD 70
                579**************************75 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.46
                HHHHHHHHHHHTT-HHHHH CS
       TPR_8  3 ayynlgsiylklgdyeeAk 21
                a++ lg++++ +++   A 
  KIR62902.1 73 AHHVLGRTLERMNRPADAL 91
                6789********9988775 PP

>> Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.9e-05     0.021      75     118 ..       9      52 ..       5      56 .. 0.91
   2 !    9.2   0.1    0.0023       1.6      76     120 ..      44      88 ..      43     109 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.9e-05
                      HHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHH CS
  Alkyl_sulf_dimr  75 kakealkegdyrwaaellnhlvfadpenaeakelkadaleqlgy 118
                      +a+  ++ gd+  a+ ll+ +v+a+p n++ ++l+a+a+ q ++
       KIR62902.1   9 RATMFFEMGDASGAVRLLEPIVEAEPGNSAVRQLLARAYFQTAQ 52 
                      67778999*******************************99887 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0023
                      HHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHHH- CS
  Alkyl_sulf_dimr  76 akealkegdyrwaaellnhlvfadpenaeakelkadaleqlgyqa 120
                      a+++++  +++ a e+l  lv  dp+++ a++++ ++le++ + a
       KIR62902.1  44 ARAYFQTAQLNRAEEQLRELVDRDPSDHYAHHVLGRTLERMNRPA 88 
                      78999********************************99998765 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   6.7e-06    0.0048       7      54 ..      22      69 ..      15      72 .. 0.90
   2 !    9.0   0.1    0.0024       1.7       9      45 ..      58      94 ..      58      99 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6.7e-06
      TPR_20  7 elaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrk 54
                 ++ le  ++a+p + + r  lA+a+++  +   A eqL e++ rd +
  KIR62902.1 22 AVRLLEPIVEAEPGNSAVRQLLARAYFQTAQLNRAEEQLRELVDRDPS 69
                567788889***********************************9975 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0024
      TPR_20  9 aeleaalaanpddldarldlAlallaagryeeAleqL 45
                ++l++ +  +p+d+ a++ l + l   +r ++Al +L
  KIR62902.1 58 EQLRELVDRDPSDHYAHHVLGRTLERMNRPADALRHL 94
                589999****************************998 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.54   3.9e+02       6      23 ..      10      27 ..       4      27 .. 0.84
   2 !    7.5   0.4    0.0065       4.7       4      34 ..      42      70 ..      41      72 .. 0.93
   3 !    9.0   0.0    0.0021       1.5       1      28 [.      73     100 ..      73     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.54
       TPR_7  6 arlysrlGdyeeAielye 23
                a +++++Gd + A++l+e
  KIR62902.1 10 ATMFFEMGDASGAVRLLE 27
                667899999999999987 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0065
       TPR_7  4 nLarlysrlGdyeeAielyeqsLaltkdped 34
                 Lar+y++  +  +A+e +++   +++dp+d
  KIR62902.1 42 LLARAYFQTAQLNRAEEQLRE--LVDRDPSD 70
                59*******************..99999987 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0021
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLal 28 
                 a++ L+r+ +r+++ ++A+++++ + a+
  KIR62902.1  73 AHHVLGRTLERMNRPADALRHLRIAAAM 100
                 5678*****************9987766 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00035      0.25      35      71 ..       9      45 ..       4      46 .. 0.93
   2 !    8.5   4.3    0.0029       2.1       3      68 ..      45     110 ..      43     115 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00035
       TPR_9 35 RGlllaqlGclsaAladLeaylalapdapdaeairaq 71
                R+ + +++G+ s+A++ Le  ++ +p + +++++ a+
  KIR62902.1  9 RATMFFEMGDASGAVRLLEPIVEAEPGNSAVRQLLAR 45
                999***********************99999999876 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0029
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeai 68 
                 +++ +  +  ra + +  l+  +P d++ +   G+ l+++++++ Al+ L  ++a+   + d  ++
  KIR62902.1  45 RAYFQTAQLNRAEEQLRELVDRDPSDHYAHHVLGRTLERMNRPADALRHLRIAAAMYSTNTDYTTA 110
                 678999999999999999999******************************999998877766655 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.25   1.8e+02       9      29 ..      10      30 ..       7      32 .. 0.82
   2 !    8.3   1.0    0.0031       2.2       8      29 ..      43      64 ..      39      66 .. 0.92
   3 !    7.9   0.1     0.004       2.9       7      32 ..      76     101 ..      75     103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.25
      TPR_10  9 analrqrgrydeAealleeal 29
                a + +++g+  +A++lle  +
  KIR62902.1 10 ATMFFEMGDASGAVRLLEPIV 30
                5667899*********99655 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0031
      TPR_10  8 LanalrqrgrydeAealleeal 29
                La+a++q+ ++++Ae+ l+e +
  KIR62902.1 43 LARAYFQTAQLNRAEEQLRELV 64
                9*****************9976 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.004
      TPR_10   7 NLanalrqrgrydeAealleealair 32 
                  L+++l +++r ++A+++l+ a a++
  KIR62902.1  76 VLGRTLERMNRPADALRHLRIAAAMY 101
                 69***************998777666 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.25   1.8e+02       5      16 ..       7      18 ..       7      27 .. 0.83
   2 ?    4.5   0.0     0.047        34       7      34 .]      43      70 ..      39      70 .. 0.89
   3 !    7.0   0.0    0.0078       5.6       2      27 ..      72      97 ..      71     104 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.25
                HHHHHHHHHTT- CS
       TPR_1  5 ynlGnayfklgk 16
                y+++ ++f++g+
  KIR62902.1  7 YRRATMFFEMGD 18
                89*********9 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.047
                HHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  7 lGnayfklgkydeAleyyekALelnPnn 34
                l+ ayf+  +++ A+e  ++ +  +P++
  KIR62902.1 43 LARAYFQTAQLNRAEEQLRELVDRDPSD 70
                8999************999999999975 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0078
                HHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1  2 kalynlGnayfklgkydeAleyyekA 27
                +a+  lG ++ +++++ +Al + + A
  KIR62902.1 72 YAHHVLGRTLERMNRPADALRHLRIA 97
                58889***************998765 PP

>> HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00016      0.11      53      91 ..      11      49 ..       5      87 .. 0.80
   2 ?    2.2   0.0      0.18   1.3e+02      60      93 ..      52      85 ..      47     114 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00016
  HrpB1_HrpK 53 vlliergrweeAlrlLreveaeasgtpyakaLlAlcLaa 91
                 +  e g+ ++A+rlL+ + ++++g  ++  LlA + ++
  KIR62902.1 11 TMFFEMGDASGAVRLLEPIVEAEPGNSAVRQLLARAYFQ 49
                566788999************************988654 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.18
  HrpB1_HrpK 60 rweeAlrlLreveaeasgtpyakaLlAlcLaalr 93
                +++ A   Lre+ ++ ++  ya   l   L+ ++
  KIR62902.1 52 QLNRAEEQLRELVDRDPSDHYAHHVLGRTLERMN 85
                5666777788888888888888877777776554 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1      0.13        95       3      25 ..       5      27 ..       3      28 .. 0.85
   2 ?    1.2   1.2       1.1   7.9e+02       7      25 ..      43      61 ..      38      62 .. 0.71
   3 ?   15.7   0.8   2.3e-05     0.017       2      25 ..      72      95 ..      71      95 .. 0.96

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.13
       TPR_4  3 allaLArallalGdldeAralle 25
                a + +A   ++ Gd+  A +lle
  KIR62902.1  5 ADYRRATMFFEMGDASGAVRLLE 27
                667788889999**********9 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 1.1
       TPR_4  7 LArallalGdldeAralle 25
                LAra++++ +l +A++ l+
  KIR62902.1 43 LARAYFQTAQLNRAEEQLR 61
                8888887766666777766 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 2.3e-05
       TPR_4  2 rallaLArallalGdldeAralle 25
                +a+++L+r+l +  ++++A+++l+
  KIR62902.1 72 YAHHVLGRTLERMNRPADALRHLR 95
                69*********************8 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   0.00016      0.12      81     135 ..      42      93 ..       5     101 .. 0.72
   2 ?    0.9   0.0      0.45   3.3e+02     111     139 ..      88     117 ..      73     121 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00016
      TPR_21  81 llAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlkt 135
                 llA+a +++ +l++A++qL+++++  ++++++   +  L r l  ++  ++Al+ 
  KIR62902.1  42 LLARAYFQTAQLNRAEEQLRELVDRDPSDHYA---HHVLGRTLERMNRPADALRH 93 
                 689*********************99888554...44455556666666666655 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.45
      TPR_21 111 lkalarlRLarvll.aekkydeAlktLeak 139
                  +al +lR+a+ +   + +y  Al+++e+ 
  KIR62902.1  88 ADALRHLRIAAAMYsTNTDYTTALRRVENR 117
                 677888999876651556899999988875 PP

>> DUF4248  Domain of unknown function (DUF4248)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       4.7   3.4e+03      11      34 ..      10      33 ..      10      35 .. 0.76
   2 ?    9.7   0.0    0.0012      0.84       8      35 ..      41      68 ..      36      69 .. 0.91
   3 ?    1.5   0.1      0.42     3e+02      10      28 ..      97     115 ..      91     120 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.7
     DUF4248 11 AvlYfPdltpksAvrrLrrwIkrn 34
                A+++f    ++ Avr L   ++++
  KIR62902.1 10 ATMFFEMGDASGAVRLLEPIVEAE 33
                778888888999999887776665 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0012
     DUF4248  8 seLAvlYfPdltpksAvrrLrrwIkrnp 35
                + LA +Yf +++ + A ++Lr+ ++r+p
  KIR62902.1 41 QLLARAYFQTAQLNRAEEQLRELVDRDP 68
                569*********************9987 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.42
     DUF4248  10 LAvlYfPdltpksAvrrLr 28 
                  A +Y  +    +A+rr  
  KIR62902.1  97 AAAMYSTNTDYTTALRRVE 115
                 5999******9***99976 PP

>> NatB_MDM20  N-acetyltransferase B complex (NatB) non catalytic subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.6e-05     0.047     212     299 ..      22     109 ..      17     114 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-05
  NatB_MDM20 212 aillLeflltksphNfqlkLlLvrlYlllGagslalklyskLdiKqiQlDtlghllftr.lstlgpfskalslleqalrfYesaeketp 299
                 a+ lLe  ++  p N  ++ lL r+Y++    ++a +  ++L  +    D  +h+++ r l+++++ + al+ l+ a ++Y+++ + t+
  KIR62902.1  22 AVRLLEPIVEAEPGNSAVRQLLARAYFQTAQLNRAEEQLRELVDR-DPSDHYAHHVLGRtLERMNRPADALRHLRIAAAMYSTNTDYTT 109
                 788***************************************555.56888888888877*********************99998665 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       6.1   4.4e+03      14      20 ..       4      10 ..       4      13 .. 0.81
   2 ?   -1.2   0.0       2.4   1.7e+03       3      15 ..      12      24 ..      10      27 .. 0.79
   3 ?   10.9   0.0   0.00039      0.28       2      41 ..      45      84 ..      44      85 .. 0.93
   4 ?   -1.7   0.0       3.4   2.4e+03      25      39 ..      87     101 ..      86     103 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6.1
      TPR_11 14 ieaYkkA 20
                +++Y++A
  KIR62902.1  4 LADYRRA 10
                579*999 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.4
      TPR_11  3 ayyeqGkyeeAie 15
                +++e G+  +A+ 
  KIR62902.1 12 MFFEMGDASGAVR 24
                6899999888875 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00039
      TPR_11  2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41
                +ay++  +++ A e++++ ++ dP++  a++ LG ++ ++
  KIR62902.1 45 RAYFQTAQLNRAEEQLRELVDRDPSDHYAHHVLGRTLERM 84
                79********************************888775 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 3.4
      TPR_11  25 PdnaeayynLGlayy 39 
                 P +a  ++ +++a+y
  KIR62902.1  87 PADALRHLRIAAAMY 101
                 778888899999988 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.011       7.8      15      41 ..      17      43 ..       7      46 .. 0.87
   2 ?    3.0   0.1      0.15   1.1e+02       6      35 ..      42      71 ..      41      78 .. 0.87
   3 ?    2.0   0.0       0.3   2.1e+02      15      25 ..     105     115 ..      96     118 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                T-HHHHHHHHHHHHHHTTS-HHHHHHH CS
  Fis1_TPR_C 15 geYseArryvdalLeiEPenrQaqsLk 41
                g+ s A r+++ + e EP+n+ +++L 
  KIR62902.1 17 GDASGAVRLLEPIVEAEPGNSAVRQLL 43
                5567799***************99996 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.15
                HHHHHHHHHT-HHHHHHHHHHHHHHTTS-H CS
  Fis1_TPR_C  6 ylAlGhyklgeYseArryvdalLeiEPenr 35
                +lA +++   + ++A + ++ l   +P+ +
  KIR62902.1 42 LLARAYFQTAQLNRAEEQLRELVDRDPSDH 71
                589999999999999999999999999877 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.3
                 T-HHHHHHHHH CS
  Fis1_TPR_C  15 geYseArryvd 25 
                  +Y++A+r v+
  KIR62902.1 105 TDYTTALRRVE 115
                 69******987 PP

>> SPO22  Meiosis protein SPO22/ZIP4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00017      0.12      85     127 ..      38      76 ..      30     115 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
       SPO22  85 svlrllarayleldqeesyekalkavellqkeygkkehpslll 127
                 +v +llaray+   q + +++a++ +++l   ++++++ ++ +
  KIR62902.1  38 AVRQLLARAYF---QTAQLNRAEEQLRELVDRDPSDHY-AHHV 76 
                 6789*******...8**************888885544.4433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:01.00
# Mc/sec: 369.41
//
Query:       KIR62903.1  [L=84]
Description: DNA mismatch repair protein MutS [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-11   43.4   0.1    3.6e-11   43.3   0.1    1.0  1  Smr       Smr domain


Domain annotation for each model (and alignments):
>> Smr  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.1     2e-15   3.6e-11       1      80 []       5      82 ..       5      82 .. 0.94

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 2e-15
                EE-TT-..-HHHHHHHHHHHHHHHHHTT-SEEEEE--STTSTTHCHHHHHHHHHHHCSTTEEEEEE--CCCTGGGEEEEEE- CS
         Smr  1 lDLhgl..rraealnvletfldaasakglrsvevihGkGahagvgvLrpavmgwLagkeaveafreaekkeGgkGavvVlLk 80
                lDLh    + +++ ++l+  +d+a+ak+ + ve+i GkG+    g L+++v ++L++k+  + +++ ek+ +++G ++V+++
  KIR62903.1  5 LDLHEIfnKGHDIDRALRGIMDEAVAKKATLVEIIPGKGS----GQLKKRVLRFLDQKDVKQLYHRVEKDSKNFGRLFVHFR 82
                79998866778999**************************....**************99999****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 577.49
//
Query:       KIR62904.1  [L=793]
Description: peptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-38  132.8   0.0    1.8e-38  132.2   0.0    1.3  1  Peptidase_M28  Peptidase family M28
    9.5e-05   22.2   0.0    0.00025   20.8   0.0    1.7  1  Peptidase_M20  Peptidase family M20/M25/M40
  ------ inclusion threshold ------
       0.02   13.9   0.0       0.15   11.0   0.0    2.0  2  Peptidase_M42  M42 glutamyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.2   0.0   3.1e-42   1.8e-38       1     195 [.     126     313 ..     126     316 .. 0.95

  Alignments for each domain:
  == domain 1  score: 132.2 bits;  conditional E-value: 3.1e-42
                    EEEEEESTTCESEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHHHHHHCCCTTEEEEEE CS
  Peptidase_M28   1 NviatlegkatdevlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkafakakpelkkiaavln 96 
                    Nv+a+l+g++++  + l AHyDsv+   gp   G +D+A+g++++Le+ar+laa + rp+++v+f+++daEEa l G++afa+++p +++  +vln
     KIR62904.1 126 NVVARLPGTDPTGKVFLVAHYDSVQS--GP---GGNDDAAGTSTILEVARALAAGP-RPRNDVVFVLTDAEEACLCGASAFAADHPLAADGGVVLN 215
                    9*********888************9..**...********************966.*************************9999********** PP

                    ECS-SSSS--EEEHHHHHHCHHHHHHHHHHHHHTT-TTSCCEEEEESSTT-STTHHHH.TTT--EEEECTSSS-TTTTSTTSSGGGB-HHHHHHHH CS
  Peptidase_M28  97 lDmvgsggkellfesgdkssselekelkalakpvgraaaedpfdersgrgrsDhspfl.kagvpvldlaetgfpevyHtprDtldnidkdtlaria 191
                    l++ gs+g+ ++fe++ ++++ +    +a+ +pvg++    +  +r  + ++D+++fl +ag+ +l+ a  + + vyHtp Dt++ +d ++l++++
     KIR62904.1 216 LEARGSTGPVIMFETSRDNAKLVDVFGRAAPHPVGTSF--AVEIYRALPNDTDFTAFLdRAGFVGLNSAYIDGGAVYHTPLDTPAAMDRASLQQHG 309
                    ************************************87..6677899***********6667*********************************9 PP

                    HHHH CS
  Peptidase_M28 192 elvl 195
                    +++l
     KIR62904.1 310 DNAL 313
                    9987 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   4.3e-08   0.00025      32      94 ..     152     209 ..     141     366 .. 0.65

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4.3e-08
                    STTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.THHHHHHHHHHTTTCESEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20  32 GrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.gGakallegleerekvdav 94 
                    G+G +d+ +g  ++le++ral+ +g++p+ ++v++++ +EE ++  Ga a+++    ++++ a 
     KIR62904.1 152 GPGGNDDAAGTSTILEVARALA-AGPRPRNDVVFVLTDAEE-AClCGASAFAA----DHPLAAD 209
                    899*****************65.568999************.56799999999....3333332 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.046   2.8e+02       2      25 ..     126     149 ..     125     151 .. 0.92
   2 ?   11.0   0.0   2.5e-05      0.15     134     179 ..     157     203 ..     155     235 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.046
                    -EEEEEESSTTSSEEEEEEE--B- CS
  Peptidase_M42   2 nliakkkgkekepkvmiaAHmDei 25 
                    n++a+++g + + kv ++AH D +
     KIR62904.1 126 NVVARLPGTDPTGKVFLVAHYDSV 149
                    899*****99999*********87 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 2.5e-05
                    HHHHHHHHHHHHHHHHCTSS-S.SEEEEEEESTCTTTSHHHHHHHHH CS
  Peptidase_M42 134 Ddragvavllellkelkeeele.atvylvatvqEEvGlrGaktsaek 179
                    Dd ag   +le++++l+    + ++v++v t  EE  l Ga+++a +
     KIR62904.1 157 DDAAGTSTILEVARALAAGPRPrNDVVFVLTDAEEACLCGASAFAAD 203
                    999**************999889*******************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.40
# Mc/sec: 5896.96
//
Query:       KIR62905.1  [L=417]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-32  112.6   0.2    3.6e-32  111.8   0.2    1.4  1  SpoIIE        Stage II sporulation protein E (SpoIIE)
    1.3e-11   44.7   0.1    2.5e-11   43.8   0.1    1.4  1  Response_reg  Response regulator receiver domain


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.2     4e-36   3.6e-32       2     192 ..     221     413 ..     220     414 .. 0.92

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 4e-36
                 TTEEEEEEEECSSSSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEESSSSEEEEETTSTEEEEE- CS
      SpoIIE   2 dgrlalvvgDvvGhGleAalimgllrsalrelataglepaevlkrlnralardleeeerfaTavlavydpstgkleyanaGhpppllvrpdggtkllla 100
                 ++r+ l+vgDv+GhG++ a++ ++lr a r+l+ ag + +evl +l+++l ++ + +e faT+  a++d++ + +++  aGhpppll+++ g++  ++a
  KIR62905.1 221 PDRVDLIVGDVCGHGVDEAALGVELRVAWRALVLAGVPDDEVLPALEQVLMSERRLQEIFATVATARLDLAGNAATVRLAGHPPPLLLSG-GKVAPVPA 318
                 58999*********************************************99999999********************************.******** PP

                 -SS--TTTSSST-EEEEEEE--TTE.EEEEESCCCCSSS.HHHHHHCCCHHCHHHHCT.......HCCHHHHHHHHHHHHTTSSSSS-EEEEEEEE CS
      SpoIIE 101 stglplGilpeadyetaelelepgd.tlllyTDGvtEar.dsdgelfgkerllallasa..egesleelldalveellelgsgeleDDitllvlrv 192
                 ++gl+lG+   + +    le++++d  ll+yTDG++E r  +++e  ++  l +ll+++   + +l+el   lv +++++++g+l+DD+++l++ +
  KIR62905.1 319 PGGLLLGV-RPRRPVAFDLEFDTDDwSLLMYTDGLIEGRvGDGDERLDVPGLTELLSDRdnLAVPLAELPAWLVGRAEQINGGPLADDVAMLLVTR 413
                 ********.555556667777766548*************8888888*********999665667***************************9975 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.1   2.7e-15   2.5e-11       1     104 [.      40     142 ..      40     150 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 2.7e-15
                   EEEESSSHHHHHHHHHHHHHTTEEEEE..EESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTES CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeeva..eaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagad 95 
                   vl+v+Dd+  + l+ +ll e +  +++  +a++ +ea + +  + vd++llD+ +p+ +Gl+ l+++ e ++   v +lt++s+e   + a+  ga+
    KIR62905.1  40 VLLVEDDEGDAFLVGELLAETNS-SIDllVATSLSEARQRM--MGVDCVLLDLGLPDAQGLDGLRQVLEMSSGAAVCVLTGRSDEHLGIVAVAEGAQ 133
                   89*****************7666.55534788888887765..679*************************************************** PP

                   EEEESSG-H CS
  Response_reg  96 dflsKpfdp 104
                   d+l+K    
    KIR62905.1 134 DYLVKGQVD 142
                   *****7655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2894.40
//
Query:       KIR62906.1  [L=597]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-23   81.7   2.8    4.5e-23   81.7   2.8    2.5  2  CHASE3          CHASE3 domain
    1.1e-21   77.4   0.0      2e-21   76.6   0.0    1.4  1  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
    1.1e-13   50.9   3.9    1.7e-13   50.3   0.1    3.2  3  HisKA           His Kinase A (phospho-acceptor) domain
    4.5e-09   36.5   0.6    2.8e-08   34.0   0.1    2.6  2  HAMP            HAMP domain
  ------ inclusion threshold ------
       0.03   13.7   1.0      0.061   12.7   1.0    1.4  1  Tropomyosin     Tropomyosin
      0.032   13.3   0.1      0.047   12.7   0.1    1.2  1  TelA            Toxic anion resistance protein (TelA)
      0.045   13.6   6.3       0.12   12.2   6.3    1.7  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
      0.056   13.4   0.0       0.12   12.3   0.0    1.4  1  HATPase_c_5     GHKL domain
       0.09   12.9   0.6        0.2   11.7   0.6    1.5  1  ADIP            Afadin- and alpha -actinin-Binding
       0.13   11.8   1.2       0.15   11.6   0.2    1.5  2  Exonuc_VII_L    Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> CHASE3  CHASE3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   2.8   2.5e-26   4.5e-23       6     126 ..      48     168 ..      43     177 .. 0.94
   2 ?    2.9   0.9     0.054        97      70     114 ..     250     297 ..     243     302 .. 0.76

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 2.5e-26
      CHASE3   6 ehtqevlanlerllsalvdaEtgqRGYlltgdeefLepyeqaraeiqealeelreltadnpeqqerldrlealieqkl.aeleetialrreggleaala 103
                 ++t +++a+ ++lls lvd+Et+ RGY ltgd++ Lepy q+ ++ q+ ++++r+l+   p+ +++ld++ea + +++ +++e++i+  +e+g+ a +a
  KIR62906.1  48 DRTGPLRAQSQELLSVLVDQETAIRGYALTGDRRDLEPYVQGGEREQQLYRSMRGLIGVYPALARQLDTVEAEAGRWRsTVAEPVIRTTEEQGTTAGRA 146
                 7888999************************************************************************************99999999 PP

      CHASE3 104 lvrsdegkelmdeiraliaemrd 126
                 l+  +e+++++d ir+ ++++++
  KIR62906.1 147 LIT-EESRQRFDVIRNSVSQLQE 168
                 988.69*************9964 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.054
      CHASE3  70 erldrlealieqklaeleet...ialrreggleaalalvrsdegkelm 114
                 +++d++++ i++ lae++e    i+ ++++ + +a++lvrs++  e++
  KIR62906.1 250 DDVDAMRQKIAKDLAEVREArerIEWVNSQLQKQAEELVRSNRDLEQF 297
                 567888999988885544444559999997777999999999987665 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   1.1e-24     2e-21       2     110 ..     403     512 ..     402     514 .. 0.88

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 1.1e-24
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE..TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikase..ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesep 98 
                  e+ L+ ++ nlv+N++kf  ++   +v+++a+   d+ +is +DnGiGi +e  +k+f  f++  ++k+ + gtG+Gl+ivkk+ve +gG++wv+++ 
  KIR62906.1 403 EEPLLTNLLANLVSNSIKFRRPDVPPRVHVSARLvgDEWEISCQDNGIGIEPEFADKIFVIFQR-LHSKDAYPGTGIGLAIVKKIVEYHGGRVWVDTDT 500
                 678899*************555555566666422558**********************99999.889999************************9999 PP

                 TTEEEEEEEEES CS
   HATPase_c  99 grGttftftlpl 110
                  +Gt ++ftlp 
  KIR62906.1 501 AEGTAIRFTLPA 512
                 9*********95 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.84   1.5e+03      28      50 ..      48      70 ..      41     130 .. 0.68
   2 ?   -1.0   0.1       1.1   1.9e+03      34      53 ..     149     168 ..     134     170 .. 0.85
   3 !   50.3   0.1   9.7e-17   1.7e-13       2      65 ..     294     359 ..     293     361 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.84
                HC..T-HSSCHHHHHHHHHHHHH CS
       HisKA 28 kregklteelkeyletiesearr 50
                 r+g+l+ + +e+l ++++++  
  KIR62906.1 48 DRTGPLRAQSQELLSVLVDQETA 70
                44466666666777666666543 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
                 HSSCHHHHHHHHHHHHHHHH CS
       HisKA  34 teelkeyletiesearrldh 53 
                 tee ++ +++i++++ +l++
  KIR62906.1 149 TEESRQRFDVIRNSVSQLQE 168
                 6999999*****99999875 PP

  == domain 3  score: 50.3 bits;  conditional E-value: 9.7e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC....T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkre..gklteelkeyletiesearrldhlvedlLdlsrie 65 
                 l++f+   +H+L  PL  +  ++++L+r+  g+l+e+  +y++ ++++a+r+++l++dlL +sri+
  KIR62906.1 294 LEQFAYVASHDLQEPLRKVASFCQLLQRRyaGQLDERADQYIAFAVDGAQRMQRLINDLLAFSRIG 359
                 689999********************8888**********************************97 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.1   1.5e-11   2.8e-08       4      51 ..     212     259 ..     210     261 .. 0.96
   2 ?   -1.5   0.0       1.9   3.4e+03      14      26 ..     381     393 ..     377     395 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.5e-11
                 HTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHH CS
        HAMP   4 rrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrL 51 
                 r ++rPL  La+++r++a+Gd+ +r+  sg+ E+ +La  ++aM++++
  KIR62906.1 212 RMVVRPLTGLAEQVREVAKGDFQHRIAGSGPPEFLRLADDVDAMRQKI 259
                 889******************************************987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.9
                 HHHHHHHTTTBTS CS
        HAMP  14 araarriaaGdld 26 
                 ++aar+ a+G+l+
  KIR62906.1 381 TEAARQYADGELT 393
                 78********986 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.0   3.4e-05     0.061      20      82 ..     248     312 ..     244     340 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.4e-05
  Tropomyosin  20 akkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeeaekaades..erarKv 82 
                  + + +++ ++k++k+ aEv   + ri+ ++++l++  e+l ++ + Le++   a+ +  e +rKv
   KIR62906.1 248 LADDVDAMRQKIAKDLAEVREARERIEWVNSQLQKQAEELVRSNRDLEQFAYVASHDlqEPLRKV 312
                  567789999****************************************9988877655666665 PP

>> TelA  Toxic anion resistance protein (TelA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   2.6e-05     0.047      50     161 ..     218     333 ..     211     355 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.6e-05
        TelA  50 LseLvkelkeldpdelkee...kkl.gllp...lfkkaknkieklfakYekaeeqidkIvkeLekgqdellkdnaaLdql.yeknleyfkeLekyiaaG 140
                 L+ L ++++e+ + +++ +     + ++l+    ++ +++ki+k +a+ ++a+e i+ +  +L+k+ +el ++n+ L+q  y +  +  + L+k + + 
  KIR62906.1 218 LTGLAEQVREVAKGDFQHRiagSGPpEFLRladDVDAMRQKIAKDLAEVREARERIEWVNSQLQKQAEELVRSNRDLEQFaYVASHDLQEPLRKVASFC 316
                 6677777777777777666766333355553235678999999999*********************************63778888888899999999 PP

        TelA 141 ekkleeldekllpeleakaea 161
                 ++    l+++++ +l+++a++
  KIR62906.1 317 QL----LQRRYAGQLDERADQ 333
                 99....999999999999873 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   6.3   6.8e-05      0.12      30     137 ..     247     352 ..     244     357 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.8e-05
                     HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHH CS
  Apolipoprotein  30 rlskeleelrarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaeelrerlerhvealkarlapyve 124
                     rl+++ +++r++++++l evr++  ++++ v+ ql++++eel +  +  +e+ +  +++d++e  +++a+  + l+ r +  +++  ++  +++ 
      KIR62906.1 247 RLADDVDAMRQKIAKDLAEVREA-RERIEWVNSQLQKQAEELVRS-NRDLEQFAYVASHDLQEPLRKVASFCQLLQRRYAGQLDERADQYIAFAV 339
                     899******************86.789***************999.9999999999999999999999999999999999999999999999988 PP

                     HHHHHHHHHHHHH CS
  Apolipoprotein 125 elrqklaerleel 137
                     ++ q++++ + +l
      KIR62906.1 340 DGAQRMQRLINDL 352
                     8888888877666 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.5e-05      0.12      11      90 ..     408     499 ..     405     505 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.5e-05
  HATPase_c_5  11 gnlLdNAieacskiee..ekrfIrltvrekkksliisieNsyeg.......ek....kklesskskkeehGiGlksireivkkykgnlsieae 90 
                   nlL N +  + k+++    + +++++r   +   is++ +  g       ++    ++l+s k      GiGl  +++iv+ ++g ++++++
   KIR62906.1 408 TNLLANLVSNSIKFRRpdVPPRVHVSARLVGDEWEISCQDNGIGiepefadKIfvifQRLHS-KDAYPGTGIGLAIVKKIVEYHGGRVWVDTD 499
                  44444444444444322256788888888777777777655333233333333555555555.6678899******************99876 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6   0.00011       0.2      77     136 ..     246     305 ..     243     314 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
        ADIP  77 erlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalqqiktqyahel 136
                  rl + + + ++++a   a+ r+++ +++  +++l++++eel r +++l+q++  ++h+l
  KIR62906.1 246 LRLADDVDAMRQKIAKDLAEVREARERIEWVNSQLQKQAEELVRSNRDLEQFAYVASHDL 305
                 588999999*******************************************99999997 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         3   5.5e+03     184     201 ..     148     165 ..      91     186 .. 0.53
   2 ?   11.6   0.2   8.6e-05      0.15     146     273 ..     249     369 ..     208     389 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3
  Exonuc_VII_L 184 llerkrqrldeleerler 201
                   ++e++rqr+d +++++++
    KIR62906.1 148 ITEESRQRFDVIRNSVSQ 165
                   222223333333333333 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 8.6e-05
  Exonuc_VII_L 146 eeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerlkekleekkerlkklkerlell 242
                   +++++++++++ k +++ ++e+++r+e ++s+l+++ e l r+++ l+++++  ++ l++ l+k ++ ++ l++r+  +l+e+++++ +       +
    KIR62906.1 249 ADDVDAMRQKIAKDLAE-VREARERIEWVNSQLQKQAEELVRSNRDLEQFAYVASHDLQEPLRKVASFCQLLQRRYAGQLDERADQYIAF------A 338
                   45556666666666654.466778888888888877777778888888888888888888888888888888877754555555555444......7 PP

  Exonuc_VII_L 243 eekkerleeleeklealsplkvLkrGyaivr 273
                    +  +r+++l++ l a s    L+ G++ v 
    KIR62906.1 339 VDGAQRMQRLINDLLAFSRIGRLTTGFTEVD 369
                   7888899999999999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       991  (0.0552736); expected 358.6 (0.02)
Passed bias filter:                      762  (0.042501); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 4132.54
//
Query:       KIR62907.1  [L=150]
Description: chemotaxis protein CheY [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-21   75.3   0.1    4.4e-21   75.1   0.1    1.1  1  Response_reg  Response regulator receiver domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.1   2.5e-25   4.4e-21       1     111 [.      13     133 ..      13     134 .. 0.93

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 2.5e-25
                   EEEESSSHHHHHHHHHHHHHTTE.EEEEEESSHHHHHHHHHHHH.......ESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHH CS
  Response_reg   1 vlivdDdplvrellrqlleeegy.eevaeaedgkealellkeek.......vdlillDinmpgmdGlellkeireed..pelpviiltahseeedav 87 
                   vl+v+Ddp  +  +++++ee+++ ++ ++++dg+eal++l++e        +dlillD+n+p+ dG e+l+ei++++    +pv++lt+ +++ed+ 
    KIR62907.1  13 VLLVEDDPGDVLMTQEAFEEHKLrNRLTVVSDGAEALAYLRREGkyadavvPDLILLDLNLPRRDGREVLEEIKQDEqlCRIPVVVLTTSQADEDIL 109
                   89*****************888856788************87777889999**********************99996778**************** PP

                   HHHHCTESEEEESSG-HHHHHHHH CS
  Response_reg  88 ealkagaddflsKpfdpeeLlkal 111
                   + +++ a+ +++Kp+d e+ ++ +
    KIR62907.1 110 RSYQLHANAYVTKPVDFERFIAVV 133
                   ******************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1024.91
//
Query:       KIR62908.1  [L=282]
Description: inositol monophosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-37  127.2   0.0    1.2e-36  126.7   0.0    1.1  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.0   6.6e-41   1.2e-36       8     261 ..      12     274 ..       6     280 .. 0.77

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 6.6e-41
                 HHHHHHHHHHHHHHHHTTTSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCC..............CT.SSSSSEEEEEEE CS
  Inositol_P   8 aavelaakagevlreefsenelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakge..............kseltedgltwivDP 92 
                 +a  l ++a  v+   f+ +  +++ ++ + + dlvt ad+++eeli + l++ +p+++++gee++a+ +                +++    +w+vDP
  KIR62908.1  12 VAELLHRAATDVVLPLFQ-QLDDADVTE-KAPGDLVTVADQRAEELISAGLRRLRPGSVVVGEEAVADDSsllghlrpggagggHLSGGG--DVWLVDP 106
                 555667788888888898.555666666.67***************************************************55555555..5****** PP

                 EETHHHHHHT-SG-EEEEEEEETTEEEEEEEEETTTTEEECEETTTEEEETCEEEEECTTSEGGGTE...EEEEESSSSSSHHHHCHHHHHHHCCCCCH CS
  Inositol_P  93 iDGTknFvrgipqvaVsigllvegkpvlGviaqPllgqlysaakgkGaflngeklplsrappiseal...lvtlfavssrkdtseasllekvesavsae 188
                 +DGT+nF+ g + +a +++ll  g+ v +++ +Pl g+l  a +g+G+++ng + ++ +a p +++l    +t+f   + +++ e +  e++ ++++ +
  KIR62908.1 107 VDGTANFAAGRRPFALMVALLTGGEQVGAWVLDPLGGTLAVARAGHGTTVNGAPVRIGDAVPPPGELrgtAMTQFLPPKLRRRAE-AGGERIGALLPGQ 204
                 ****************************************************999999999555555111233444444444444.4566666666666 PP

                 EEEBESSHHHHHHHHHHTSTSEEEEEC.EBHHHHHHHHHHHHHTTEEEEESSSC..SSST.TSSEEEEESCHHHHH CS
  Inositol_P 189 gvrsvgssalklaavaeGkadaylefgrekkWDhAAGeaileeaGGvvtdakge..grll.largiiaanqkelae 261
                    +   ++ +++ ++ G+ +++l+ + + +WDhA+G+++++eaGGv   ++g+  + +  + + ++aan++++ae
  KIR62908.1 205 --HC---AGREYLDMLVGEQQFVLFWR-TLPWDHAPGALLVREAGGVARRFDGSdyHPAEdAPGLLVAANERVWAE 274
                 ..44...55555555567777666666.77************************6633331333444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2015.62
//
Query:       KIR62909.1  [L=524]
Description: spermidine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3620.06
//
Query:       KIR62910.1  [L=558]
Description: serine/threonine protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.9e-47  159.8   0.0      1e-46  159.4   0.0    1.1  1  Pkinase         Protein kinase domain
    6.8e-33  114.0   0.0    8.2e-33  113.8   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
      2e-11   44.1   0.0    4.2e-11   43.1   0.0    1.6  1  CBM_2           Cellulose binding domain
    3.9e-06   27.0   3.0     0.0018   18.2   0.0    3.3  3  APH             Phosphotransferase enzyme family
      0.001   18.4   0.0     0.0044   16.4   0.0    1.8  2  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.031   13.1   0.0      0.047   12.5   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   0.0   3.5e-50     1e-46       1     258 [.      16     269 ..      16     273 .. 0.91

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 3.5e-50
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHHHHSS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfee....kdelylvleyveggeladllerkgs 94 
                 y+ +e+lG G++++V +++++  g++vAvK+++ + a+++   +++++E +  ++l hpni ++y++ e+     +  y+v+e+v+gg l  +l r+g+
  KIR62910.1  16 YRLVEQLGAGGMSVVWRGYDEVLGRQVAVKVLASRLASDRAFrHRLRAEAQAAARLCHPNITNVYDYGESeqvgLTVPYVVMELVDGGPLSARLGRDGT 114
                 67899******************************9999887799************************9544445668******************** PP

                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHH CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyell 191
                 l+ +ea  i +++ ++l+  H++g++HrD+ p N+++  +  +K++DFG+++ + +s+k    +  gt+ YlAPE l++ ++s+++Dv++lG++ly +l
  KIR62910.1 115 LPWREAVTIGAEVTSALATAHARGVVHRDVTPGNVMLT-STGVKVVDFGISALAGESEKgaEGTLLGTPAYLAPERLDNGQVSPATDVYALGLLLYRML 212
                 **************************************.888*************999998999*********************************** PP

                 HSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 192 tgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeel 258
                 tg+ p++++++++    +l+        +  + e +p    ++ e+ +l++++l+k p++R+  +e+
  KIR62910.1 213 TGRLPWQASTTTQ----MLRA------HMYAEPEPMPDVPGLPVEVAELVHRCLAKRPEDRPATAEV 269
                 *******555555....4444......122345789999999********************98876 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   2.8e-36   8.2e-33       3     258 ..      18     272 ..      16     273 .. 0.90

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 2.8e-36
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEESSSS....EEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelleeakimkklkhpnivkllgvctkeep....llivteyvkgGdLlkfLrk 94 
                  l ++lG+G  + V++g+ +        +VavK+l ++  +++  +++l  ea+   +l hpni +++    +e+      ++v+e+v+gG L+  L +
   KIR62910.1  18 LVEQLGAGGMSVVWRGYDE----VLGRQVAVKVLASRLASDRafRHRLRAEAQAAARLCHPNITNVYDYGESEQVgltvPYVVMELVDGGPLSARLGR 111
                  6799************988....88899******776655554699999******************9999666566779*****************9 PP

                  TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHH CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfG 192
                  +   +l  ++ + + ++v ++++  +++ +vHrd++  Nv+l+ ++ vk+ DfG++     ++e  ++++      ++apE l++++++ ++Dv++ G
   KIR62910.1 112 D--GTLPWREAVTIGAEVTSALATAHARGVVHRDVTPGNVMLT-STGVKVVDFGISALA-GESEKGAEGTLLGTPAYLAPERLDNGQVSPATDVYALG 205
                  7..9***************************************.6779********998.7777778888888999********************** PP

                  HHHHHHHTTSSGTTTTSHHHHHHHHH..HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
  Pkinase_Tyr 193 vllwEiftlgespypglkneevlekl..kegkrlekpekcpeelyelmkkcweedpeeRptfselvek 258
                   ll+ ++t g+ p++  +++++l++    e + ++     p e++el+++c++++pe+Rp  +e+ ++
   KIR62910.1 206 LLLYRMLT-GRLPWQASTTTQMLRAHmyAEPEPMPDVPGLPVEVAELVHRCLAKRPEDRPATAEVART 272
                  ********.********888877654347888899999***********************9998876 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.4e-14   4.2e-11       1     101 []     382     481 ..     382     481 .. 0.94

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 1.4e-14
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTE CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGa 99 
                 ++++ya+  + ++ fta++t++N+++  + +Wt+++++p  q+vt++ + +v q+G +v ++++     +apG++ ++ ++g +tg+n+ p +f +  a
  KIR62910.1 382 CAVDYALRKDSGKDFTAELTLTNTSERELRDWTMSFAFPGQQTVTKT-DPAVRQQGRTVEVRPAAGQPALAPGAARKVALTGRYTGTNPLPLEFRLGDA 479
                 7899***********************************88888877.7779999*************************************9999888 PP

                 E- CS
       CBM_2 100 aC 101
                 +C
  KIR62910.1 480 EC 481
                 88 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0027       8.1      22      84 ..      41     107 ..      19     135 .. 0.72
   2 !   18.2   0.0   6.1e-07    0.0018     160     194 ..     131     162 ..     111     167 .. 0.78
   3 ?    1.3   0.3      0.09   2.7e+02      75     126 ..     253     300 ..     201     353 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0027
                 -EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTE.EEEEEE----EE-SS CS
         APH  22 ryvlrrnppa..raaeeirrevallrlLakagv.pvPevlagdtddeeigl.lfalieyvpgrsllr 84 
                 ++++++ + +     ++ +r  a+ ++ a++    +  v+++++++++ ++ +++++e v+g +l+ 
  KIR62910.1  41 QVAVKVLASRlaSDRAFRHRLRAEAQAAARLCHpNITNVYDYGESEQVGLTvPYVVMELVDGGPLSA 107
                 67777766664233334445555555555444478999************************99987 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 6.1e-07
                 --SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 160 lpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 l+++ +++++H+D  pgN+++++++ +   v+Df+
  KIR62910.1 131 LATAHARGVVHRDVTPGNVMLTSTGVK---VVDFG 162
                 334679****************66555...9***8 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.09
                 E----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHH CS
         APH  75 eyvpgrsllrklsaaqlpellealgeflaalhqvdpaalpladflaqdlell 126
                  ++ ++    +++ + + e+++ l+e+ + l  v+ +++p+ +++a+ l+++
  KIR62910.1 253 HRCLAKR---PEDRPATAEVARTLAEAAGMLATVPVPSAPPGGDPAR-LDPD 300
                 3333333...3447778888888888888888888776776655544.3333 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.24   7.1e+02      16      69 ..      18      71 ..      10      81 .. 0.78
   2 !   16.4   0.0   1.5e-06    0.0044     157     271 ..     131     240 ..     118     263 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.24
  Kinase-like 16 rgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqelairll 69
                  +e l+ g+ svv++  d+  g ++avkv  +     +    rl+ ++ a+++l
   KIR62910.1 18 LVEQLGAGGMSVVWRGYDEVLGRQVAVKVLASRLASDRAFRHRLRAEAQAAARL 71
                 57789999********************98877666666667777776666665 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.5e-06
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlat 254
                   a  +a+g+vh ++t+ n++l    g+++ +f+    ag++ + +e      P  l  +r       + +++ ++d+++lGl  yr+    lP +  t
   KIR62910.1 131 LATAHARGVVHRDVTPGNVMLTST-GVKVVDFGISALAGESEKGAEGTLLGTPAYLAPER-L----DNGQVSPATDVYALGLLLYRMLTGRLPWQAST 222
                  577799***************876.57887776655566555533333333344444443.2....5789***********************98765 PP

  Kinase-like 255 .eeakeewkfklckkipe 271
                    ++  ++ +   +++p+
   KIR62910.1 223 tTQMLRAHMYAEPEPMPD 240
                  144555666666666655 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.6e-05     0.047     325     390 ..     136     194 ..     123     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.6e-05
  Pkinase_fungal 325 kagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgee 390
                       g++HrD+  +N+++t      +    ++D+ +    ++ s++ ++++  GT++++a e l +++
      KIR62910.1 136 ARGVVHRDVTPGNVMLT------STGVKVVDFGISALAGE-SEKGAEGTLLGTPAYLAPERLDNGQ 194
                     6799*************......67778889988888775.5555568999999999988887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3860.51
//
Query:       KIR62911.1  [L=222]
Description: potassium transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-25   88.9   0.0      4e-25   88.3   0.0    1.3  1  TrkA_N          TrkA-N domain
    3.7e-10   39.5   0.1    1.3e-09   37.7   0.0    2.0  2  TrkA_C          TrkA-C domain
    4.9e-06   26.8   0.0    7.7e-06   26.2   0.0    1.4  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    3.1e-05   24.5   0.0    6.4e-05   23.5   0.0    1.6  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    5.7e-05   22.7   0.0    7.8e-05   22.3   0.0    1.2  1  Epimerase       NAD dependent epimerase/dehydratase family
    0.00011   21.9   0.0    0.00017   21.2   0.0    1.2  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
    0.00021   21.0   0.0    0.00034   20.3   0.0    1.4  1  ApbA            Ketopantoate reductase PanE/ApbA
     0.0016   18.4   0.0     0.0024   17.8   0.0    1.3  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0017   18.9   0.0     0.0032   18.0   0.0    1.5  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0039   16.6   0.0     0.0056   16.1   0.0    1.2  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
     0.0047   16.9   0.0     0.0067   16.4   0.0    1.3  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
  ------ inclusion threshold ------
      0.031   13.5   0.1      0.097   11.9   0.0    1.7  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      0.048   13.5   1.2       0.15   11.9   0.2    2.2  3  Rossmann-like   Rossmann-like domain
      0.069   12.4   0.2        0.1   11.9   0.2    1.4  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.082   12.8   0.0       0.13   12.2   0.0    1.3  1  LpxI_N          LpxI N-terminal domain


Domain annotation for each model (and alignments):
>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0   3.3e-28     4e-25       1     116 []      11     126 ..      11     126 .. 0.97

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 3.3e-28
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSH.HHHHHHHHHHHHHTSSSEEEEEES CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgdd.eanilavllakelnpkkkiiaraq 97 
                 i++iGlGr+G +la  L++ g+ +v++id++ erv++ +    +vv++dat+e +L+++g+ ++  v++a+g   ea++l+vl++ el   ++i+ara 
  KIR62911.1  11 IAVIGLGRFGCHLASSLTQlGH-EVLAIDRNGERVQRWSPYLDRVVQADATEEGALRQLGVTDFPRVVVAIGASvEASVLTVLALAELGV-PQIWARAT 107
                 79*****************888.5************************************************999***********9877.9******* PP

                 SGGGHHHHHHHTTSEEEEH CS
      TrkA_N  98 dpehaellkklgadvvisp 116
                 +++ha++l ++ga++vi p
  KIR62911.1 108 SDKHAKILGSVGAQHVIFP 126
                 *****************87 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.3   2.8e+03      28      38 ..      33      43 ..      25      45 .. 0.75
   2 !   37.7   0.0   1.1e-12   1.3e-09       4      68 ..     155     221 ..     152     222 .] 0.93

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.3
                EEEEEE-T-EE CS
      TrkA_C 28 lvvairRggel 38
                 v+ai R+ge 
  KIR62911.1 33 EVLAIDRNGER 43
                5999*999654 PP

  == domain 2  score: 37.7 bits;  conditional E-value: 1.1e-12
                 EEEE--GGGTTSBHHHHTHHHH.S-EEEEEE-T.-EEES--TT-B--TT-EEEEEEEHHHHHHHHHH CS
      TrkA_C   4 vtvpagsplvGktlkelnlrar.gvlvvairRg.geliipsgdtvLeeGDvllvvgspsdlaelrel 68 
                  +v+    lvG++l+el   +r gv+vv+ + + +++  +++ tvL +G vl+v gs +++++++el
  KIR62911.1 155 AKVRVPDALVGRPLRELAPADRyGVMVVGAKLPgERFRYADPGTVLAPGSVLIVEGSIAQVQRFAEL 221
                 56777899**********************8888******************************986 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   6.4e-09   7.7e-06       2      81 ..      11      96 ..      10     120 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 6.4e-09
                   EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT...EEE-SSHHHHHHHC...SEEEE-SSSHHHHHHHHHSHCCC-- CS
  NAD_binding_2  2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg...akaaesieelvasl...dvvitmvkagkavdeviegllealk 81
                   i++iGlG  G ++a+ l++ g++v +++r+ e+v+++       ++a ++ e ++++l   d+  ++v  g+ v++ +  +l+ ++
     KIR62911.1 11 IAVIGLGRFGCHLASSLTQLGHEVLAIDRNGERVQRWSPYLdrvVQADATEEGALRQLgvtDFPRVVVAIGASVEASVLTVLALAE 96
                   89********************************9997664443777777778888889998888888889999998888666554 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   5.4e-08   6.4e-05       2      55 ..      11      60 ..      10      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 5.4e-08
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECH CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdn 55
                   i++iG G++g  las l++ g   he++ a +rn e+++ +   l + v+a ++
     KIR62911.1 11 IAVIGLGRFGCHLASSLTQLG---HEVL-AIDRNGERVQRWSPYLDRVVQADAT 60
                   9********************...****.66**********9998855555333 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   6.5e-08   7.8e-05       3      74 ..      13      84 ..      11      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 6.5e-08
                EETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S.- CS
   Epimerase  3 VtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAa.v 74
                V+G  G  G +l+  l + g+ev+++dr+ ++ ++++    ++v++d t++ al++l  +  p +v+ ++a v
  KIR62911.1 13 VIGL-GRFGCHLASSLTQLGHEVLAIDRNGERVQRWSPYLDRVVQADATEEGALRQLGVTDFPRVVVAIGAsV 84
                6666.888*********************999999988888******************99******997744 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.5e-07   0.00017       3      40 ..      11      48 ..      10      62 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.5e-07
                    EEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHC CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvDideekvdkln 40
                    i+viGlG  G   a  l ++ghev+ +D + e+v+ + 
      KIR62911.1 11 IAVIGLGRFGCHLASSLTQLGHEVLAIDRNGERVQRWS 48
                    89********************************9985 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.8e-07   0.00034       1      37 [.      11      48 ..      11      75 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.8e-07
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealk 37
                ia++G+G  G+ la +L++ g++v  i+r+  r+++++
  KIR62911.1 11 IAVIGLGRFGCHLASSLTQLGHEVLAIDRNGeRVQRWS 48
                89*****************************9999986 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     2e-06    0.0024       2      47 ..      11      56 ..      10      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2e-06
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksle 47
                +aviG G  G  +a+ + + g+eV  +d++ e++++    + + ++
  KIR62911.1 11 IAVIGLGRFGCHLASSLTQLGHEVLAIDRNGERVQRWSPYLDRVVQ 56
                8*********************************998888777444 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.6e-06    0.0032       2      51 ..      11      60 ..      10      70 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.6e-06
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHH CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqekle 51
                ++v+G G  g+ lA+ l++lg++V  ++r+ +  +   + + +++q   +
  KIR62911.1 11 IAVIGLGRFGCHLASSLTQLGHEVLAIDRNGERVQRWSPYLDRVVQADAT 60
                79***************************998776666666666655555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.7e-06    0.0056      34      73 ..       6      45 ..       1      62 [. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.7e-06
                  GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C 34 lsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee 73
                    g  +++iGlGr G ++a  l+++g +v+a+dr+ ++ +
    KIR62911.1  6 TDGGGIAVIGLGRFGCHLASSLTQLGHEVLAIDRNGERVQ 45
                  5667799***************************988665 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.6e-06    0.0067       2      36 ..      11      45 ..      10     115 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.6e-06
                    EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHH CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrlwvreeelie 36
                    iav+G G +G  lA +l++ ghev  + r+ e ++
      KIR62911.1 11 IAVIGLGRFGCHLASSLTQLGHEVLAIDRNGERVQ 45
                    9************************9999985554 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.1e-05     0.097     145     197 ..      11      63 ..       3      71 .. 0.80
   2 ?   -1.4   0.1      0.88     1e+03     101     111 ..      74      84 ..      54      99 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.1e-05
                  EEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 145 ivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaaleealekeG 197
                  i+v+G G  G+ lA+ l++lg+ev  ++++ + ++   + l + +++  ++eG
   KIR62911.1  11 IAVIGLGRFGCHLASSLTQLGHEVLAIDRNGERVQRWSPYLDRVVQADATEEG 63 
                  899*********************99999887776666666666666666555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.88
                  SEEEE---EEE CS
                  xxxxxxxxxxx RF
  Pyr_redox_2 101 dklvlAtGssp 111
                   ++v+A+G+s 
   KIR62911.1  74 PRVVVAIGASV 84 
                  34455555433 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00012      0.15      13      82 ..      11      74 ..       3      99 .. 0.82
   2 ?   -1.8   0.0       2.3   2.7e+03      14      37 ..     116     139 ..     104     164 .. 0.71
   3 ?   -1.5   0.0       1.7   2.1e+03      74      97 ..     157     178 ..     118     187 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
  Rossmann-like 13 vGiisaGrvGtalgaaleraghvvvgisaisaasreraerrlPdvpvlevedvaaraellllavPdaelp 82
                   + +i+ Gr G  l+ +l + gh v +i        er +r  P  +++   d +++ +l  l v d  +p
     KIR62911.1 11 IAVIGLGRFGCHLASSLTQLGHEVLAIDR----NGERVQRWSPYLDRVVQADATEEGALRQLGVTD--FP 74
                   6799*********************9965....457888889999998888999999999888877..34 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.3
  Rossmann-like  14 GiisaGrvGtalgaaleraghvvv 37 
                    G ++a +v    +++ er+ h +v
     KIR62911.1 116 GSVGAQHVIFPEAETGERVAHLIV 139
                    666666666666666677777665 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.7
  Rossmann-like  74 lavPdaelpglvkglaatgavraG 97 
                    + vPda +   +++la +   r G
     KIR62911.1 157 VRVPDALVGRPLRELAPA--DRYG 178
                    456666666666666655..4445 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   8.5e-05       0.1      29      87 ..       9      67 ..       3     147 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.5e-05
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHH CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellae 87
                 + + viG G  G + ++  ++lg +V ++D + +r ++ + +  ++v++ + +e +l++
   KIR62911.1  9 GGIAVIGLGRFGCHLASSLTQLGHEVLAIDRNGERVQRWSPYLDRVVQADATEEGALRQ 67
                 6689**********************************999999988886655555544 PP

>> LpxI_N  LpxI N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011      0.13       7     108 ..      15     118 ..      10     122 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
      LpxI_N   7 GsGrlPllvaeaakaagrevvvvalegeadeelekivdevaevsvgqlgklikaLkregvtevvmaGk.vekpklldlrp.Dlralkllaklkdrgdda 103
                 G Gr+  ++a ++++ g+ev+++  +ge  ++++++ d+v++   ++ g l ++      + vv +G+ ve + l  l+  +l + +++a++++ +  +
  KIR62911.1  15 GLGRFGCHLASSLTQLGHEVLAIDRNGERVQRWSPYLDRVVQADATEEGALRQLGVTDFPRVVVAIGAsVEASVLTVLALaELGVPQIWARATSDKHAK 113
                 89*************************************999999997766555555555667778972466666666667999999999999999999 PP

      LpxI_N 104 lLrav 108
                 +L++v
  KIR62911.1 114 ILGSV 118
                 99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1471.73
//
Query:       KIR62912.1  [L=444]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-44  151.8  13.8      1e-43  149.6  13.8    1.7  1  TrkH      Cation transport protein
  ------ inclusion threshold ------
       0.12   12.4   0.1         11    6.2   0.0    2.4  2  DUF3775   Protein of unknown function (DUF3775)


Domain annotation for each model (and alignments):
>> TrkH  Cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.6  13.8   1.1e-47     1e-43      60     485 ..      38     420 ..      15     429 .. 0.89

  Alignments for each domain:
  == domain 1  score: 149.6 bits;  conditional E-value: 1.1e-47
        TrkH  60 slafldalfeavsgltttglsvivveeslprsgltlraqlqqiGglgvvvlaylslptlgrgsaflylseaqkeelggkelrslselikilvvyyvgle 158
                   +f++a f+a+s++++tglsv+++ +  + +gl + ++l q+Gg g+++ a l++  +      l +++  + e ++  ++ ++ l+  +  ++vg e
  KIR62912.1  38 FTPFSTAFFTATSAVSVTGLSVVDTPTYWNGFGLVMITVLTQVGGFGILSGATLVVLVV-ARQLGLRNRLLVQAETAEFGIGDVRGLLLRIAGTMVGCE 135
                 34679********************7777***********************9999888.66788889999999************************* PP

        TrkH 159 ilafvllvvliytakaysevvdstgvsplwwaffhsmSafnnlGfsltpnSlasfnknivillvaiifiilGnigFpillrvi.iaikkkilrdlkqik 256
                 ++  ++l   + +   y  +      + lw++ffh++ +fnn+Gf l ++Sl+ f + ++i l++++  i+G+ gFp l+++  ++++  + +      
  KIR62912.1 136 LVMTAVLAGRFWLGYDYPPG------RALWYGFFHAVQGFNNGGFALFSDSLVGFARDPWICLPIAFGTIVGGLGFPALFEASrEWRTPGR-W------ 221
                 *******7777777777777......69****************************************************99624555555.3...... PP

        TrkH 257 eslsflldlprrcftLllasgfvwllllelavlnvtdnilfilldegslvvksipkgsrvlkalFqsvstrtaGFsvvdlsnlhpaikvllvlmmyigg 355
                    +  ++l +   ++ll +gfv+ll+ e                 +   ++ ++++ +vl+ + qs+  rt GF+v d + l      llv  m+igg
  KIR62912.1 222 ---AIATKLTVWGSVVLLVVGFVGLLAAEWP---------------DPRTIGGYDVAGKVLATFTQSALVRTGGFAVLDTAGLDEESVPLLVALMFIGG 302
                 ...4789999999999999999999999944...............7899************************************************* PP

        TrkH 356 lpgStaggIrrtnvyeefslgkyeieqekepkavskksidgkhlerqllvdlwslflvlliilileglklsdvqepdfsffdiLfevvSaygtvGLSlG 454
                  ++StaggI+  +++ +   + +e+++e+++  v ++++  + l+++l v+l s++lv+   ++l    l  ++   + +  +Lfev+Sa+ t GLS+G
  KIR62912.1 303 GSASTAGGIKVATFFLLGFAIWAELRGEPDVI-VGRRRVSTASLRQALTVALLSVALVVGGTVVLL---LLTEG---LAYHRALFEVTSAFSTTGLSTG 394
                 *******************************9.********************9887765444444...44444...789******************* PP

        TrkH 455 aknaslsaqlttisklvlialmirGrlrglp 485
                      + +++ + ++ vl +lm +Gr++ l+
  KIR62912.1 395 -----VAQTVAEPGQFVLTVLMYVGRVGPLT 420
                 .....99********************9776 PP

>> DUF3775  Protein of unknown function (DUF3775)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0012        11      10      31 ..     285     306 ..     283     328 .. 0.86
   2 ?    3.6   0.0    0.0074        67      16      27 ..     404     415 ..     397     417 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0012
     DUF3775  10 sLnedeqaeLvALmwiGRgdfe 31 
                 +L+e+    LvALm+iG g+ +
  KIR62912.1 285 GLDEESVPLLVALMFIGGGSAS 306
                 788899999********98765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0074
     DUF3775  16 qaeLvALmwiGR 27 
                 q  L +Lm++GR
  KIR62912.1 404 QFVLTVLMYVGR 415
                 789********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3157.41
//
Query:       KIR62913.1  [L=386]
Description: glycerophosphodiester phosphodiesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-47  160.2   0.0    9.1e-47  160.0   0.0    1.0  1  GDPD      Glycerophosphoryl diester phosphodiesterase family


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   0.0   5.1e-51   9.1e-47       1     259 []      60     375 ..      60     375 .. 0.95

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 5.1e-51
                 TTTTTTTSSTTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH....................BGGGS-HHHHHTSTECCTTCCCC CS
        GDPD   1 HRGasgnlpEnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagr...................ldvkdltleelkrldkiakenkaq 80 
                 HRGasg++pE+Tle+++ A+  GadyiE D++ TkDg +V+ H+  +  ttdva +                    +++d+tl+el++l+  ake+  q
  KIR62913.1  60 HRGASGYRPEHTLEAYRLAIRMGADYIEPDLVPTKDGQLVARHENEISGTTDVAAHpefaarkatktidgvsvtgWFTEDFTLAELRTLR--AKERLPQ 156
                 ******************************************************************************************..8999888 PP

                 SCCCSSGCC..B...BHHHHHHHHHHCCSEEEEEEECCCCCCCHHHH.HHTCHHHCCCCCSCHHTT..STTCSCEEEESTHHHHHHHHHTCTCTEEEEE CS
        GDPD  81 lsenrvrle..fpfptleevlkkpqnvglnieikipmlseakeeeel.qivkeilksvdeilkkvlkkadkrkvifssfnpdilkllrekqpklpllfl 176
                 ++  +   +   p+ptl+ev++  +   +  ++ i++++e+k++ +   i   + + +  +lk    + +++ vi++sf+ ++l++l+++++ ++l++l
  KIR62913.1 157 VRVANTAFDgkLPVPTLQEVIDLARTESKARGRTIGVYPETKHPSYFaSIGLPLEERLVAVLKANNLTHRNDPVIIQSFETANLRKLDKLTD-VKLAQL 254
                 87655433344************99999******************99**************998889999*********************.****** PP

                 EHHHHHHC-E....EECHCCCCCCCTCCCCHHCCCHCCCE.................B.CHHHHHHHTT-EEEEBSB-THS.................. CS
        GDPD 177 teggteaead...ssleraakfakadallgevsavaeglg.................dpdlVkraksrglvvhvytvnned.................. 237
                 ++ ++ +++d   + + r+++ + + + l+ ++ +a+g+g                 ++ l+++a++ +lvvh++t++ e+                  
  KIR62913.1 255 LD-ASGRPYDftlAGDPRTYADLATASGLKWIAGYADGVGanknlivprdaagkllaPTALIRDAHRLKLVVHAWTFRAENqflpadfrigadpnargd 352
                 97.6666666699************************************************************************************** PP

                 .HHHHHHHHCCC-SEEEES-HHH CS
        GDPD 238 .eeemkrlleagvdgvitDfpdt 259
                   +e  ++  +g dgv+ D+pdt
  KIR62913.1 353 iTAEYELFYGLGLDGVFADQPDT 375
                 *99999***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3077.79
//
Query:       KIR62914.1  [L=401]
Description: amino acid ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-57  194.7  19.4    4.8e-57  194.2  19.4    1.2  1  Peripla_BP_6  Periplasmic binding protein
    3.3e-15   55.9   0.2    2.2e-14   53.3   0.2    1.9  1  Peripla_BP_5  Periplasmic binding protein domain
    2.2e-06   27.0   0.1    5.2e-06   25.8   0.1    1.7  1  ANF_receptor  Receptor family ligand binding region


Domain annotation for each model (and alignments):
>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.2  19.4   8.1e-61   4.8e-57       1     339 [.      42     373 ..      42     377 .. 0.91

  Alignments for each domain:
  == domain 1  score: 194.2 bits;  conditional E-value: 8.1e-61
                   EEEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHH.TTEETTEEEEEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EE CS
  Peripla_BP_6   1 pikiGlltplsGpyassgksllagaqaafeeiNa.aGGinGrkielverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpv 96 
                   p+k+Gl+++ sG++as+gk++  g++a ++ + +  G++++r ie++e Dda+dp++a++aa++l+  +g +++ g +ss+va++va+++a+++v++
    KIR62914.1  42 PVKVGLVYSQSGALASYGKQYIEGFRAGLDFATRgTGKVGDRAIEVTEVDDAGDPAKAVSAAKDLIG-KGTKIIAGSTSSGVALQVAPIAAQNKVLF 137
                   79********************************66*******************************.***************************** PP

                   EE.SS.-HHCCTTSTTEEESS--HHHHHHHHHHHHHHHTTSCEEEEEEESSHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHHHHHHHHTTT- CS
  Peripla_BP_6  97 ig.pa.gltgekcspyvfslgpsysaqasalveylakelggkkvalvyadyafgregiaalkaaakaaGgevvgeepvplgttdfsaqvlqikaaga 191
                   i+ pa +++ + +++y+f+ g + ++++ ++  + + +  gkkv+++++d afg++ +aa+ka++  aG +v  +++ p+++t+f++++ qi++a++
    KIR62914.1 138 ISgPAaTDAVTGANRYTFRSGRQSYQDVVTAKSF-IGDPTGKKVVVFAQDGAFGDANEAAVKAVIGGAGATVS-SVRAPASATEFTPFASQIRSAKP 232
                   **8551455699****************999987.78899*******************************95.*********************** PP

                   SEEEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHHHHHHHHHHHHTTEEEEESCST.CCCSHHHHHHHHHHHHHHTTGGC--HHHHHHHHHHH CS
  Peripla_BP_6 192 davllagtgadlaallkaaaeaGldakrillvswsgseedlkalggeaaegvlavtpyfp.dldnpavrafvaayeaayggapppsqfaaggyiaad 287
                   d +++a +g++++a+++++ ++G+     + v ++++     ++ g+a  ++++ + +f+ ++d++a++a     +a+++g    ++f+  g++aa+
    KIR62914.1 233 DLLFVAWAGTTAPAMWQTLDQQGVLSS--TTVVTGLDIRASWPTFGAAGTKISFLSHWFDgAADTEAAKA----AKAKVPGG-TLDLFHPDGFAAAQ 322
                   ***********************9986..4456666666666666669999********84466666665....45568885.59************ PP

                   HHHHHHHCCTHCCHHHHHHHHHHS-BECCCTCCBEECTTSBEE--EEEEEE- CS
  Peripla_BP_6 288 lllealkaagsltreavraaleslgfdgllgplkftaedhqasrpvyvvqvd 339
                   ++++a+++ g  + ++++++le+ +f+g+ g+ +++aedh + +p++ ++++
    KIR62914.1 323 MVVRAVEQ-GGDDVDKMIKGLEGWSFEGVKGTMTIRAEDHALLQPMFQAKLT 373
                   ********.88***********************************999887 PP

>> Peripla_BP_5  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.2   3.6e-18   2.2e-14       1     342 [.      43     377 ..      43     390 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 3.6e-18
  Peripla_BP_5   1 ikvGvLhSlsGtmaisekslkdaallaieeinaagGvlg.rkieavvvdpasdwelfaekaeklieedkvevvfGcwtSasRkavlpvveelnalLf 96 
                   +kvG+++S+sG++a   k+ +++ +  ++   + +G  g r ie   vd a+d+++  + a++li  ++ +++ G+  S    +v p+   +n++Lf
    KIR62914.1  43 VKVGLVYSQSGALASYGKQYIEGFRAGLDFATRGTGKVGdRAIEVTEVDDAGDPAKAVSAAKDLIG-KGTKIIAGSTSSGVALQVAPIAA-QNKVLF 137
                   69***************************9999999776589***********************9.7899*****9999999***9875.566666 PP

  Peripla_BP_5  97 Y..pvqYEG.eEssknviYtGaapnqqaipavdyllselgakrvflvGsdyvypretnrilkallkakggevvgeeYlplgssdvqkivakikkakp 190
                      p   +  + + +  + +G    q ++ a +++ + +g k+v++   d  +   +   +ka++   g  +v    +p  +++++   ++i++akp
    KIR62914.1 138 IsgPAATDAvTGANRYTFRSGRQSYQDVVTAKSFIGDPTG-KKVVVFAQDGAFGDANEAAVKAVIGGAGA-TVSSVRAPASATEFTPFASQIRSAKP 232
                   52455555514567778999********************.**************999999999987765.6788889******************* PP

  Peripla_BP_5 191 dvvlstinGdsnvafykelkeagikaekipvvslsvaeeelaaidaealvGhlaawnYfqsvdtpenkafvakfkarvgedrvtndpmeaayiqvkl 287
                   d+++   +G+++ a++++l+++g+ ++++ v+ l +      + +a+ ++  + +  +  + dt+++ka  ak    v    +++      + + ++
    KIR62914.1 233 DLLFVAWAGTTAPAMWQTLDQQGVLSSTTVVTGLDIRA-SWPTFGAAGTKISFLSHWFDGAADTEAAKAAKAK----VPG-GTLDLFHPDGFAAAQM 323
                   *****************************999999865.4566777666666666666666666666655444....333.34566777889999** PP

  Peripla_BP_5 288 waqAvekagstdvekvreallgqelkapeGevkidpenhhlsktvrigkikadGq 342
                   +++Ave+ g +dv+k+ + l g +++  +G+++i+ e h l +++  +k++  G+
    KIR62914.1 324 VVRAVEQGG-DDVDKMIKGLEGWSFEGVKGTMTIRAEDHALLQPMFQAKLTGSGS 377
                   *****9965.789***********************9999888888888887776 PP

>> ANF_receptor  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   8.6e-10   5.2e-06      23     182 ..      83     237 ..      75     364 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 8.6e-10
                   EEEEEEEEE-TT-HHHHHHHHHHHCCCCEEEEEE-SSHHHHHHHHHHHCCTT-EEEESS---GGGG-TTTTTTEEESS--CHHHHHHHHHHHHHTT- CS
  ANF_receptor  23 iklgyeiidtccdfslaleaaldflkgkvvaviGpssssvsdavaslanlfkiPvisygstspelsdknryptflrtvpsdtsqaqAivdilkhfgW 119
                   + ++++ +d++ d+++a+ aa d++ + ++++ G++ss+v+ +va +a+++k+ +is  + +++++  nry   +r    + + +    + +     
    KIR62914.1  83 RAIEVTEVDDAGDPAKAVSAAKDLIGKGTKIIAGSTSSGVALQVAPIAAQNKVLFISGPAATDAVTGANRYT--FRSGRQSYQDVVTAKSFIGDPTG 177
                   56778889******************77****************************9999899999999977..66655544444445555666666 PP

                   -EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEESTCHHHCHHHHHHHHHHTTT--EEEE CS
  ANF_receptor 120 kkvaliysdddygesglqaleeeleergicvalkekipessnddevvrkllkeikskarvivl 182
                   kkv++ ++d++ g     a++   +  g +v+ +   +++++++  +++++   + k++  ++
    KIR62914.1 178 KKVVVFAQDGAFGDANEAAVKAVIGGAGATVSSVRAPASATEFTPFASQIR---SAKPDLLFV 237
                   999999999999999999999999999999999999887777777777775...335555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3145.96
//
Query:       KIR62915.1  [L=247]
Description: branched-chain amino acid ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-30  105.2   0.0    4.9e-30  104.8   0.0    1.1  1  ABC_tran      ABC transporter
    6.9e-07   29.1   0.0    1.5e-06   28.0   0.0    1.6  1  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 
    1.3e-05   25.2   0.2    0.00071   19.5   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0044   17.5   0.1     0.0063   17.0   0.1    1.1  1  AAA_23        AAA domain
  ------ inclusion threshold ------
      0.041   13.3   0.2        0.2   11.1   0.1    1.9  2  SMC_N         RecF/RecN/SMC N terminal domain
      0.067   13.3   0.0       0.16   12.1   0.0    1.7  1  MMR_HSR1      50S ribosome-binding GTPase
        0.1   11.4   0.1       0.15   10.8   0.1    1.2  1  ABC_ATPase    Predicted ATPase of the ABC class
        0.1   12.3   0.2        0.3   10.8   0.0    1.9  2  AAA_29        P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8   0.0   2.2e-33   4.9e-30       2     137 .]      18     173 ..      17     173 .. 0.91

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 2.2e-33
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH.................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren.................... 79 
                 + v+l+l +ge ++++G+nGaGK++L++l++gl  pt+G++lldg+d++   +++++r+ +g  +q +++f  ltvren                    
  KIR62915.1  18 DGVHLDLAPGEFLGVIGPNGAGKTSLFNLITGLRPPTAGQVLLDGEDVTAlPPHRRARRGLGRTFQSSSVFGSLTVRENvrlavqahrggsmklwrraa 116
                 7899**********************************************99********************************999999998877654 PP

                 .HHHTC.....HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .xxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .esdee.....iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  +   +     +++al+++gl++ + t +   + +L +G+k+++++a +l+ +p+++llDEp+a
  KIR62915.1 117 aD---RgvaaaADAALDRVGLHH-RGTAL---AGTLAHGEKRKLEIALLLAGEPRVMLLDEPMA 173
                 30...256666999999999999.44444...5*****************************85 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   6.5e-10   1.5e-06       2      23 .]     223     244 ..     222     244 .. 0.96

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 6.5e-10
  BCA_ABC_TP_C   2 vIAeGtPaEvrndPrVieAYLG 23 
                   ++A+ tP+ v++d  V+eAYLG
    KIR62915.1 223 LLACDTPETVMADATVQEAYLG 244
                   69*******************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   3.2e-07   0.00071       2      24 ..      30      52 ..      29      99 .. 0.80
   2 ?    4.2   0.0     0.014        31     240     286 ..     148     191 ..     129     208 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.2e-07
      AAA_21  2 nvliGpNgsGKSnLLdaldllar 24
                 ++iGpNg+GK++L+ ++ +l+ 
  KIR62915.1 30 LGVIGPNGAGKTSLFNLITGLRP 52
                579***************99964 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.014
      AAA_21 240 GtkrllalltallralkkgsllliDEpEngLHPkllrrllellkels 286
                 G kr l ++++l+  +   ++ l+DEp +g   + +++l+ ++++l+
  KIR62915.1 148 GEKRKLEIALLLAGEP---RVMLLDEPMAGVSAEDVPELVAVIRSLT 191
                 7777766666666666...********99987766666666666555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   2.8e-06    0.0063      13      40 ..      20      48 ..      12      50 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.8e-06
      AAA_23 13 qeidFskglt.lItGpNGaGKTTildAik 40
                +++d+ +g +  ++GpNGaGKT++++ i+
  KIR62915.1 20 VHLDLAPGEFlGVIGPNGAGKTSLFNLIT 48
                56677665441589************997 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   8.9e-05       0.2      25      44 ..      28      47 ..      19      50 .. 0.85
   2 ?    0.1   0.0       0.2   4.4e+02     136     185 ..     144     189 ..      81     220 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.9e-05
                SEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAi 44
                +f  ++GpNG+GK++l++ i
  KIR62915.1 28 EFLGVIGPNGAGKTSLFNLI 47
                5788***********99755 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.2
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke 185
                 +L  Gek  + +aLl+A +   p+ ++llDe  a   ++ v +++ ++++
  KIR62915.1 144 TLAHGEKRKLEIALLLAGE---PR-VMLLDEPMAGVSAEDVPELVAVIRS 189
                 5778999999999998843...22.4456666666655555555555555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.9e-05      0.16       3      22 ..      31      50 ..      29      83 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.9e-05
                EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge 22
                +++G   +GK++L+n +tg 
  KIR62915.1 31 GVIGPNGAGKTSLFNLITGL 50
                89***************985 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   6.6e-05      0.15     356     415 ..     166     222 ..     164     244 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.6e-05
                 H---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTE CS
  ABC_ATPase 356 mirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmeeyk 415
                 m+ De m+ +    +e +  lv  +r+l+ + g s+++v   ++  l++Ad++ +m++  
  KIR62915.1 166 MLLDEPMAGVS---AEDVPELVAVIRSLTGDSGRSVLMVEHHMDVILELADRIAVMHHGA 222
                 66677777765...778999************************************9755 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00014       0.3      13      39 ..      18      44 ..      15      57 .. 0.78
   2 ?   -3.2   0.0       3.3   7.5e+03      27      35 ..     190     196 ..     188     200 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00014
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                dg  +++ + ++  ++Gp+G+GK++l+
  KIR62915.1 18 DGVHLDLAPGEFLGVIGPNGAGKTSLF 44
                566677887778889**********98 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.3
      AAA_29  27 ltGpsGsGK 35 
                 ltG+sG   
  KIR62915.1 190 LTGDSG--R 196
                 677765..4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1577.00
//
Query:       KIR62916.1  [L=243]
Description: branched-chain amino acid ABC transporter ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-25   88.9   0.0    5.5e-25   88.5   0.0    1.2  1  ABC_tran  ABC transporter
    1.5e-11   44.7   0.3      2e-05   24.6   0.0    2.1  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    0.00038   21.0   0.0    0.00048   20.7   0.0    1.1  1  AAA_23    AAA domain
     0.0016   18.1   0.1     0.0028   17.4   0.1    1.3  1  AAA_29    P-loop containing region of AAA domain
     0.0061   16.8   0.1      0.016   15.5   0.1    1.7  1  AAA_22    AAA domain
  ------ inclusion threshold ------
      0.014   14.8   0.0          1    8.7   0.0    2.1  2  SMC_N     RecF/RecN/SMC N terminal domain
      0.037   11.5   0.9      0.048   11.2   0.9    1.0  1  DUF3584   Protein of unknown function (DUF3584)
      0.043   13.4   0.0      0.099   12.2   0.0    1.6  1  AAA_27    AAA domain
       0.13   11.9   3.5       0.45   10.2   3.3    2.0  1  AAA_30    AAA domain
       0.14   12.6   0.0       0.24   11.8   0.0    1.5  1  AAA       ATPase family associated with various cellular acti
       0.15   11.8   0.1       0.32   10.7   0.1    1.4  2  AAA_15    AAA ATPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.0   3.4e-28   5.5e-25       1     136 [.      22     165 ..      22     166 .. 0.86

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 3.4e-28
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH....HHHTC...HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxx...xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren....esdee...ieka 88 
                 l+ vs+++ +  +++++G+nG GK+t l++++gl+     + G++++ g+dl +  +++ +r+ +g++p++  +f +ltv+en    e++      +++
  KIR62916.1  22 LQGVSFTVAPTGVTVLLGRNGVGKTTTLRAVLGLTPRggeARGTVRMGGRDLLDrPTHRLVRAGLGYVPEDRDVFAGLTVAENlrlaERRGStpaYDRV 120
                 689*******************************9889999**********9997888999**********************9976333332224444 PP

                 HHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  89 lsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  + +      d++ ++++ sLSgGq+q++a+ r+ll++ +lll+DEpt
  KIR62916.1 121 FALFP---ELDRRGRQRAGSLSGGQQQMLAIGRVLLNDNRLLLVDEPT 165
                 44444...5556667778*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   7.6e-07    0.0012       1      22 [.      34      55 ..      34      73 .. 0.83
   2 !   24.6   0.0   1.2e-08     2e-05     227     287 ..     128     185 ..      72     199 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 7.6e-07
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                ++vl G+Ng+GK++ L+a  +l
  KIR62916.1 34 VTVLLGRNGVGKTTTLRAVLGL 55
                79*****************998 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 1.2e-08
      AAA_21 227 gdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr 287
                 ++++   a +lS G++++la+   ll ++   +lll+DEp  gL Pk++++++e l++ ++
  KIR62916.1 128 DRRGRQRAGSLSGGQQQMLAIGRVLLNDN---RLLLVDEPTKGLAPKVVTEVAEALERVAE 185
                 5667778999********88888888888...**********************9976654 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     3e-07   0.00048       2      40 ..      14      53 ..      13      80 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3e-07
      AAA_23  2 LkienfrsfrdqeidFsk.gltlItGpNGaGKTTildAik 40
                ++i +++ ++++++   + g+t++ G NG GKTT l+A+ 
  KIR62916.1 14 VRIAGLHILQGVSFTVAPtGVTVLLGRNGVGKTTTLRAVL 53
                7888888999999988555******************975 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.7e-06    0.0028      10      42 ..      20      52 ..      13      59 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.7e-06
      AAA_29 10 gtfdghtieidlkgatlltGpsGsGKSTllDAi 42
                + ++g ++++ + g+t+l G++G+GK+T l A+
  KIR62916.1 20 HILQGVSFTVAPTGVTVLLGRNGVGKTTTLRAV 52
                566788999*******************99776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   9.9e-06     0.016       6      99 ..      33     163 ..      30     197 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.9e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee..........................erpevv.......fvtlpsstsskdllrellralglelkae 71 
                 g++v+ G  G+GKTt+lr +l   ++  +a+                           e+++v+          l++  +s+  + +++  + +   + 
  KIR62916.1  33 GVTVLLGRNGVGKTTTLRAVLGLTPRGGEARGtvrmggrdlldrpthrlvraglgyvpEDRDVFagltvaeNLRLAERRGSTPAYDRVFALFPELDRR- 130
                 789*****************999988888877888877777666555555555555542222222222223222333333333333333333322222. PP

      AAA_22  72 rlsseellealeqalrarav.....ielliiDE 99 
                 + ++   l+  +q++ a ++      +ll++DE
  KIR62916.1 131 GRQRAGSLSGGQQQMLAIGRvllndNRLLLVDE 163
                 333333335555555555555555666666666 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00064         1      24      44 ..      32      52 ..      14      61 .. 0.86
   2 ?    4.3   0.0     0.014        23     136     192 ..     137     189 ..      85     207 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00064
                SSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldAi 44
                +++t+++G+NG GK+  l A+
  KIR62916.1 32 TGVTVLLGRNGVGKTTTLRAV 52
                579*************99998 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.014
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf 192
                 +LSgG+++++a+  ++     + + l l+De    L  k v++vae l++  +++ +
  KIR62916.1 137 SLSGGQQQMLAIGRVL----LNDNRLLLVDEPTKGLAPKVVTEVAEALERVAETVPV 189
                 69*******9998774....5667788999999999999999999998887766655 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.9   2.9e-05     0.048       7      37 ..      22      52 ..      16      53 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.9e-05
     DUF3584  7 lkGrvaeldldghtnieGtNaaGKTtLlrLi 37
                l+G+   ++++g t + G N++GKTt+lr +
  KIR62916.1 22 LQGVSFTVAPTGVTVLLGRNGVGKTTTLRAV 52
                78999999********************965 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.1e-05     0.099      19      49 ..      25      55 ..      11      56 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.1e-05
      AAA_27 19 ldfsaeeadlhliyGpNEAGKstalrAisdl 49
                ++f  + +++++++G N  GK+t+lrA+  l
  KIR62916.1 25 VSFTVAPTGVTVLLGRNGVGKTTTLRAVLGL 55
                67889999*******************9765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.3   0.00027      0.45      17      46 ..      31      60 ..      25     198 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00027
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaag 46
                +  v+vl G+ G GKtt+l+a+  +  + g
  KIR62916.1 31 PTGVTVLLGRNGVGKTTTLRAVLGLTPRGG 60
                56799****************987766655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00015      0.24       2      35 ..      36      74 ..      35     156 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00015
                EEESSTTSSHHHHHHHHHHHH.....THEEEEEETTTCS CS
         AAA  2 llyGppGtGKTllakavakel.....gvefleisgsell 35
                +l G  G+GKT++ +av   +      +  +++ g +ll
  KIR62916.1 36 VLLGRNGVGKTTTLRAVLGLTprggeARGTVRMGGRDLL 74
                689**************9876443322445666666665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00019      0.32      25      42 ..      34      51 ..      22      55 .. 0.89
   2 ?   -2.7   0.0       2.2   3.6e+03     322     354 ..     154     186 ..     151     188 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00019
      AAA_15 25 ltvliGkNnsGKSsilea 42
                +tvl G+N++GK++ l+a
  KIR62916.1 34 VTVLLGRNGVGKTTTLRA 51
                8**************998 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.2
      AAA_15 322 eknvilliEEPEahLHpqaqkvlikllkeland 354
                 ++n +ll++EP   L p+  ++++++l ++a++
  KIR62916.1 154 NDNRLLLVDEPTKGLAPKVVTEVAEALERVAET 186
                 578999*****9999999999999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 1581.38
//
Query:       KIR62917.1  [L=296]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-36  124.0  48.5    7.1e-36  123.7  48.5    1.0  1  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.7  48.5     4e-40   7.1e-36       3     268 .]       9     282 ..       7     284 .. 0.89

  Alignments for each domain:
  == domain 1  score: 123.7 bits;  conditional E-value: 4e-40
  BPD_transp_2   3 lnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl..........lllallvallvgaavglllgllvlrlkvdeliitl 89 
                   l +l laa++ ++A Gl+lvfg+a v+n++hg f+++Gay +++++ +l+            ++++++++ lv+++v l+l+++     ++++++t+
    KIR62917.1   9 LTGLGLAALYFLVASGLSLVFGLADVLNFAHGLFLGVGAYGTWWAAGNLPGAggeglgfvlaVAFGVAAGTLVAVLVELVLIRPLYSRTIEQVLVTV 105
                   568999*************************************9999987779*9999666656666666666666666666666666677779*** PP

  BPD_transp_2  90 lllsvlvgltlllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvis 186
                   +l+++ v+l++  ++   +   ++++   ++g+ ga ++ ++  + + a++++ a+l +lr tr+G+++ra  en+e++ alGi+v+r  +l+f+i+
    KIR62917.1 106 GLSLAGVALLQATWGADARPFPRPAWTRQVTGILGAQVPNGGLLLIVAAAAVLGALLAFLRWTRYGLIIRAGVENREMVTALGIDVRRAFTLVFAIG 202
                   ***********99999999999*******************9999999999999******************************************* PP

  BPD_transp_2 187 galAglaGallalllgsippnigvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   ga A+laGal  +++g+++p  g  l + a+++vv+Gg+gs++g   +a+++g+++++  ++  + + + ++ + all +vl
    KIR62917.1 203 GAAAALAGALGGVYFGTVSPGQGGSLLIFAFIVVVIGGMGSVVGSAYAAVAVGLLQQFVNYYG-A-SGVGDLCVVALLAVVL 282
                   *********************************************************655555.4.4666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2076.51
//
Query:       KIR62918.1  [L=371]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-26   92.5  31.3    3.3e-26   92.1  31.3    1.2  1  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1  31.3   1.8e-30   3.3e-26       3     252 ..      63     328 ..      61     344 .. 0.85

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 1.8e-30
  BPD_transp_2   3 lnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitlllls.vlvgl 98 
                   l+ll++ ++++ +A G+ l+fg++G++++gh+  +a G y + +l+++ + +l+ a l+ +++g +++ llg+  lr+    +++++l++  v + l
    KIR62918.1  63 LQLLAVCLVFGGLAAGYDLLFGRTGMLSFGHALYFAAGVYGTDILVTRAGLPLWQAALLTIVGGTILAGLLGAVALRTAGIAFAMVTLAFAqVGAIL 159
                   678888999999*******************************************************************999987777655155666 PP

  BPD_transp_2  99 tlllltgitsgvkgqssvkellgfagallsflsaviv..llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAgla 193
                   ++   +g+t+g++g +  +  l    + +   +  ++  l  l+lv++v+ ++  +++Gr l  ++++e+   +lG+++ r+kl++f ++g+lA+  
    KIR62918.1 160 VARDFGGLTGGEEGLPLDVSGLPAGLVGVANTVNLYWlaLAYLALVVFVVHRVSGSPTGRVLAGLRDDERRIGVLGLDPYRFKLVAFTLAGGLAAGG 256
                   6667788888888887666666665555555555666779999999999999********************************************* PP

  BPD_transp_2 194 Gallalllgsipp.nigvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgi............p 252
                   G+++ l+ g+++p  ++ +l+++ +++vvlGg g+  g+v+G++ + +++  l+++ ++            p
    KIR62918.1 257 GVVYCLIVGGASPhITSSELTLSLLVMVVLGGPGTRWGPVLGGVGYMYLDHRLTAFGSSdaveslpaflsrP 328
                   **************************************************9666666555555555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2633.07
//
Query:       KIR62919.1  [L=712]
Description: ATP-dependent DNA helicase RecQ [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-14   52.7   0.0    6.7e-14   52.0   0.0    1.3  1  DEAD          DEAD/DEAH box helicase
    2.6e-12   47.0   0.0    6.5e-12   45.8   0.0    1.6  2  Helicase_C    Helicase conserved C-terminal domain
    7.7e-06   26.0   0.0      1e-05   25.6   0.0    1.2  1  ResIII        Type III restriction enzyme, res subunit
    0.00027   20.5   0.2    0.00052   19.6   0.2    1.4  1  Pribosyltran  Phosphoribosyl transferase domain
      0.001   19.7   1.2      0.002   18.8   1.2    1.5  1  RecQ_Zn_bind  RecQ zinc-binding
     0.0024   17.6   0.0     0.0061   16.3   0.0    1.7  1  AAA_30        AAA domain
  ------ inclusion threshold ------
      0.097   12.7   3.1       0.23   11.5   0.7    2.8  3  HTH_20        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   2.6e-17   6.7e-14       3     171 ..      24     202 ..      22     207 .. 0.77

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 2.6e-17
                 HHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHS..........TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHH CS
                 xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyet..........kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardq 90 
                  Q +ai++++ + + vl+  +TG GK+++++++    ++++          +      ++iv+P+ +L++++++ + + +     r+    + ++ +  
  KIR62919.1  24 DQWRAIEALVvDRRRVLCVQRTGWGKSAVYFVATA--LLRDrdgegppadsEAAVVGPTVIVSPLLALMRNQVEAAARAGIR--ARTINSANLDEWDAI 118
                 69999999987889****************99998..5555467777665544444789*****************999985..344444444555555 PP

                 HHHHHTT.CSEEEEEHHHHHH.HHHCTSSH..CTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.H CS
                 xxxxxxx.xxxxxxxxxxxxx.xxxxxxxx..xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
        DEAD  91 lskldng.vdivvgtpgrldd.llstgkln..lsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSATlp.k 171
                  ++++ g vd+++  p+rl +  +++  l        +lV+DEa++++d+  +f+++++r+ + l++  ++++    v++ +AT++ +
  KIR62919.1 119 TAEIHDGaVDVLLISPERLNNpDFRDAVLPqlAATTGLLVVDEAHCVSDWghDFRPDYRRLRTFLANLPERTP----VLATTATANaR 202
                 66665557************966655554454556699************999*******8888865555544....*******9944 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.4   1.1e+04      38      71 ..      99     131 ..      80     133 .. 0.70
   2 !   45.8   0.0   2.5e-15   6.5e-12      18     110 ..     253     345 ..     240     346 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.4
                 HTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEE CS
  Helicase_C  38 kkgikvavlhgelpqnereeileqfnkgesdvLi 71 
                 + gi++ ++++  + +e ++i ++  +g +dvL+
  KIR62919.1  99 RAGIRARTINS-ANLDEWDAITAEIHDGAVDVLL 131
                 44788888888.7777888888888888888664 PP

  == domain 2  score: 45.8 bits;  conditional E-value: 2.5e-15
                 EEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSST CS
  Helicase_C  18 kilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRa 110
                   ++++ t+  + ++  +l+++g+ va ++g+ +  +r+++ ++  +++++ L+at+++++G d p++ +V+++++p ++  y q++GR+gRa
  KIR62919.1 253 SGIVYTLTVAAAGETAEFLRSRGYPVASYTGQAEDADRRAAEQDLLDNKIKALVATSALGMGFDKPDLGFVVHLGAPPSPIAYYQQVGRAGRA 345
                 55677777776655566668889*********************************************************************8 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0     4e-09     1e-05       3     153 ..      20     179 ..      18     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 4e-09
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S................-EEEEESSHHHHHHHHHHGGGGTGG....GEEEES CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee...........kflflvprkslleqtleefkkflseaykeigkkvs 90 
                 +lre Q++aie+l+      +++r+l +  TG GK+ v++ +++ l+   +e             ++++ p ++l+    e+ ++    a++ ++ +++
  KIR62919.1  20 RLREDQWRAIEALV-----VDRRRVLCVQRTGWGKSAVYFVATALLRDRDGEGppadseaavvgPTVIVSPLLALMRNQVEAAARAGIRARTINSANLD 113
                 69***********9.....6799***********************99888779****99999999999999999999999999999999877666666 PP

                 SS-B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS......TTTHHH CS
      ResIII  91 gdkkkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.....kswrei 153
                 +   +  e+++   ++l+++ ++l+++    + +   +l  +  ++++DEaH +++        +r++
  KIR62919.1 114 EWDAITAEIHDGAVDVLLISPERLNNPD--FRDAVLPQLAATTGLLVVDEAHCVSDWghdfrPDYRRL 179
                 666666899*****************99..34566677777888********9887544333356555 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.2     2e-07   0.00052      90     115 ..     675     700 ..     660     710 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2e-07
                   EEEE-SEESSSHHHHHHHHHHHCC-B CS
  Pribosyltran  90 VliVDDildtGgTllaalelLkekgp 115
                   Vl+VDD++dtG Tl+ +++lL+++g+
    KIR62919.1 675 VLLVDDLVDTGWTLTMTARLLRRAGA 700
                   9**********************998 PP

>> RecQ_Zn_bind  RecQ zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.2   7.9e-07     0.002      21      66 .]     444     487 ..     430     487 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.9e-07
  RecQ_Zn_bind  21 keaelekleamlaycentteCrrkllleyFgeeaaeeeCgnCDnCl 66 
                    +a+  + +am +y+ +t  Cr ++l e  +++ a + Cg+CD C+
    KIR62919.1 444 AQARTAEQQAMREYA-TTPGCRLRYLRECLDDAGAGD-CGRCDRCA 487
                   566667789******.5555***********977776.*******5 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.4e-06    0.0061       2     102 ..      21     167 ..      20     172 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.4e-06
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaa.g.............grvi...glAptgkaAkvLaeelgieastiakl.lkrlk. 81 
                 l+++Q +a+eal+ +++rv +++ + G GK+ +  +++++++++ g              +vi   +lA   ++ ++  + +gi+a+ti++  l++++ 
  KIR62919.1  21 LREDQWRAIEALVVDRRRVLCVQ-RTGWGKSAVYFVATALLRDRdGegppadseaavvgPTVIvspLLALMRNQVEAA-ARAGIRARTINSAnLDEWDa 117
                 899*************9776665.99*****************9679*****77777753333223344444444443.47799999999863556668 PP

      AAA_30  82 ..............................grarlepg.tllivDEagmvdt 102
                                                  +l++   ll+vDEa  v+ 
  KIR62919.1 118 itaeihdgavdvllisperlnnpdfrdavlP--QLAATtGLLVVDEAHCVSD 167
                 999***********************99652..6777769*******98875 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2      0.87   2.2e+03       7      35 ..     183     212 ..     180     230 .. 0.76
   2 ?   11.5   0.7   9.1e-05      0.23      13      61 .]     378     426 ..     377     426 .. 0.95
   3 ?   -3.4   0.0       4.1   1.1e+04      35      51 ..     641     657 ..     630     657 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.87
                 HS-.HHHHHHHHHHSTCTTB-HHHHHHHHT CS
      HTH_20   7 Lah.PvRrrilraLaraegltaselaerld 35 
                 La+ P R  +l+  a+a ++  +++ae+l+
  KIR62919.1 183 LANlPERTPVLATTATANARVTADVAEQLG 212
                 677788888888888888888888888885 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 9.1e-05
                 HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTEE CS
      HTH_20  13 rrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvregr 61 
                 r++l+aL+++++l+  +l   +dl+++ l   L+vL   g+v++vr g+
  KIR62919.1 378 RAVLAALHTDRPLSTQALEPIVDLRRARLELMLKVLDVDGAVRRVRGGW 426
                 79**********************************55********997 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.1
                 TS-HHHHHHHHHHHHHC CS
      HTH_20  35 dlskntlsyHLrvLeea 51 
                 d+++ +  +++r+L +a
  KIR62919.1 641 DGPRGNSAQRVRALHDA 657
                 78999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 4666.22
//
Query:       KIR62920.1  [L=318]
Description: hypothetical protein TK50_18490 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2128.97
//
Query:       KIR62921.1  [L=138]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-07   30.8   1.0    1.3e-06   28.6   0.9    2.2  2  HTH_31       Helix-turn-helix domain
    2.1e-06   27.7   0.0    3.2e-06   27.1   0.0    1.3  1  HTH_3        Helix-turn-helix
    8.6e-06   25.5   0.0    0.00023   20.9   0.0    2.8  3  HTH_IclR     IclR helix-turn-helix domain
    1.9e-05   24.3   0.1    4.9e-05   23.0   0.1    1.7  1  HTH_23       Homeodomain-like domain
    3.2e-05   23.9   0.0    4.6e-05   23.4   0.0    1.2  1  HTH_19       Helix-turn-helix domain
    0.00016   21.4   0.0    0.00042   20.1   0.0    1.7  1  HTH_25       Helix-turn-helix domain
    0.00033   20.6   0.1    0.00093   19.2   0.1    1.8  1  HTH_29       Winged helix-turn helix
    0.00052   20.4   0.0    0.00079   19.8   0.0    1.3  1  HTH_26       Cro/C1-type HTH DNA-binding domain
  ------ inclusion threshold ------
       0.01   15.9   0.0      0.017   15.1   0.0    1.4  1  HTH_7        Helix-turn-helix domain of resolvase
      0.015   15.4   0.6      0.051   13.7   0.1    2.2  2  HTH_28       Helix-turn-helix domain
      0.016   15.2   0.0      0.027   14.4   0.0    1.4  1  HTH_37       Helix-turn-helix domain
      0.083   12.9   0.0       0.14   12.1   0.0    1.4  1  HTH_36       Helix-turn-helix domain
      0.092   12.9   0.0       0.13   12.4   0.0    1.2  1  HTH_Tnp_1_2  Helix-turn-helix of insertion element transposas
       0.13   12.1   0.0       0.52   10.2   0.0    1.9  2  HTH_5        Bacterial regulatory protein, arsR family
       0.14   11.9   0.3       0.31   10.8   0.0    1.7  2  HTH_38       Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.9   1.1e-09   1.3e-06       8      59 ..      22      74 ..      11      80 .. 0.88
   2 ?    0.2   0.0      0.83   9.9e+02      47      59 ..      73      85 ..      72      86 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.1e-09
      HTH_31  8 alReraGLsqeevAerlgvsestlsrlEqGrrg.rpspavlealaralgldpa 59
                ++Re++G++  ++A ++gv +st+ r+  G ++  p +a ++ ++ al+l++ 
  KIR62921.1 22 DAREERGWTVSDLASHTGVGRSTVFRWLAGDWQdYPELAKVRGFCAALDLPVT 74
                47******************************9888999***********975 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.83
      HTH_31 47 lealaralgldpa 59
                ++a+ ralgl+++
  KIR62921.1 73 VTAAFRALGLPDS 85
                68999*****975 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   2.7e-09   3.2e-06       3      52 ..      22      73 ..      20      75 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2.7e-09
                HHHHHTTHHHHHHHHHHTSSHHHHHHHHTT..SSCSBHHHHHHHHHHHTSEH CS
       HTH_3  3 elRkqlglsqeeLAeklGvsrstisriEnG..ernPsletlkklakaLgvsl 52
                 +R+++g++  +LA  +Gv rst+ r+  G  +  P l ++   + aL+++ 
  KIR62921.1 22 DAREERGWTVSDLASHTGVGRSTVFRWLAGdwQDYPELAKVRGFCAALDLPV 73
                68****************************9988899999999999998775 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.9e-07   0.00023      13      39 ..      23      49 ..      19      51 .. 0.92
   2 ?    0.6   0.0      0.42   5.1e+02      28      39 ..      69      80 ..      60      85 .. 0.62
   3 ?   -0.9   0.0       1.2   1.5e+03       7      16 ..     124     133 ..     124     135 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.9e-07
                CTTBSS-BHHHHHHHHTS-HHHHHHHH CS
    HTH_IclR 13 aeapqeltlselArrtglpkStvhRlL 39
                a++ +++t+s+lA +tg+ +Stv+R L
  KIR62921.1 23 AREERGWTVSDLASHTGVGRSTVFRWL 49
                688899*******************87 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.42
                HTS-HHHHHHHH CS
    HTH_IclR 28 tglpkStvhRlL 39
                ++lp ++++R L
  KIR62921.1 69 LDLPVTAAFRAL 80
                555555555544 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.2
                 HHHCT-CTTB CS
    HTH_IclR   7 aiLdalaeap 16 
                 ++L++la++p
  KIR62921.1 124 DLLRYLARRP 133
                 6899999986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   4.1e-08   4.9e-05       9      38 ..      18      49 ..      14      51 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 4.1e-08
      HTH_23  9 rillllae..GlsvreIAreLgvsrrTvyrwl 38
                r++  ++e  G++v++ A + gv r+Tv rwl
  KIR62921.1 18 RAIDDAREerGWTVSDLASHTGVGRSTVFRWL 49
                5677778789*********************8 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   3.8e-08   4.6e-05       4      59 ..      20      76 ..      18      82 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3.8e-08
      HTH_19  4 LkeaReelgltqeelaerlgisrskisaiEng..kkdvpsaelllkiaealgidleyl 59
                +  aRee+g+t  +la+++g+ rs    +  g  + d+p+  +++ ++ al++++++ 
  KIR62921.1 20 IDDAREERGWTVSDLASHTGVGRSTVFRWLAGdwQ-DYPELAKVRGFCAALDLPVTAA 76
                6789*****************************66.5****************99875 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.5e-07   0.00042       4      48 ..      22      66 ..      19      69 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.5e-07
                HHHHTTT--HHHHHHHSS--HHHHHHHHCT--TTSS-HHHHHHHH CS
      HTH_25  4 aaRearglsleevaketkIrkdylealEeddfdalpepvylrgyl 48
                 aRe+rg+++ ++a  t +  +++ +  ++d+++ pe + +rg+ 
  KIR62921.1 22 DAREERGWTVSDLASHTGVGRSTVFRWLAGDWQDYPELAKVRGFC 66
                79*****************************************95 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   7.8e-07   0.00093      10      33 ..      25      49 ..      16      50 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 7.8e-07
      HTH_29 10 eGvs.tvsqiAkllglsrrtvyrwl 33
                e+ + tvs++A  +g+ r+tv+rwl
  KIR62921.1 25 EERGwTVSDLASHTGVGRSTVFRWL 49
                44444*******************8 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   6.6e-07   0.00079       4      53 ..      22      72 ..      19      75 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 6.6e-07
      HTH_26  4 elmadrgitkseLargtgisaatlsrlvkgkp.ervsldtLdkiCdaLgct 53
                 +  +rg t+s+La +tg+ ++t+ r++ g   +++ l     +C+aL+  
  KIR62921.1 22 DAREERGWTVSDLASHTGVGRSTVFRWLAGDWqDYPELAKVRGFCAALDLP 72
                56789*************************9736**************975 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   1.5e-05     0.017      19      43 ..      26      50 ..      23      52 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.5e-05
                TTT--STTTSSSS---SSSS--SS- CS
       HTH_7 19 eeGisiskIAkevnisRsTvYRyla 43
                e G ++s++A  ++++RsTv R la
  KIR62921.1 26 ERGWTVSDLASHTGVGRSTVFRWLA 50
                67899*****************887 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   4.3e-05     0.051       4      33 ..      18      49 ..      14      51 .. 0.81
   2 ?   -1.8   0.0       2.9   3.5e+03      43      49 ..      86      92 ..      72      94 .. 0.50

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.3e-05
      HTH_28  4 eiikllaa..GhsvreaArelgisrrtvyrWi 33
                ++i  + +  G +v+++A + g++r+tv rW+
  KIR62921.1 18 RAIDDAREerGWTVSDLASHTGVGRSTVFRWL 49
                566666642267*******************8 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.9
      HTH_28 43 gLvprrr 49
                g vprrr
  KIR62921.1 86 GPVPRRR 92
                3355665 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.3e-05     0.027      21      71 ..      18      69 ..       9      74 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.3e-05
                HHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT-.-HHHHHHHHHHT CS
      HTH_37 21 laiaeliekrelsqseaaqllgiaqPkvsrllrgklsrf.sldkLlnlltal 71
                +ai + +e+r+++ s++a ++g+ ++ v r l g+ ++  +l k++ + +al
  KIR62921.1 18 RAIDDAREERGWTVSDLASHTGVGRSTVFRWLAGDWQDYpELAKVRGFCAAL 69
                67**************************999988877643455555555555 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012      0.14      27      47 ..      30      50 ..      10      51 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
      HTH_36 27 sqetlakrlglsknTvsraik 47
                ++++la+++g+ ++Tv r+++
  KIR62921.1 30 TVSDLASHTGVGRSTVFRWLA 50
                689****************95 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011      0.13      27      47 ..      29      49 ..      15      59 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
                 S-HHHHHHHHTS-HHHHHHHH CS
  HTH_Tnp_1_2 27 ltldeiaeevgvsrsTlykWk 47
                  t++++a++ gv rsT ++W+
   KIR62921.1 29 WTVSDLASHTGVGRSTVFRWL 49
                 4899****************8 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00043      0.52      17      35 ..      30      48 ..      25      50 .. 0.87
   2 ?   -1.8   0.1       2.5   2.9e+03       6      11 ..     124     129 ..     119     134 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00043
                EHHHHHHHHTS-HHHHHHH CS
       HTH_5 17 cvcelaeelglsqstvShH 35
                +v++la ++g+ +stv + 
  KIR62921.1 30 TVSDLASHTGVGRSTVFRW 48
                8**************9765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.5
                 HHHHHH CS
       HTH_5   6 kILklL 11 
                 ++L++L
  KIR62921.1 124 DLLRYL 129
                 345555 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00026      0.31      10      39 ..      17      47 ..      16      50 .. 0.90
   2 ?   -3.0   0.1       5.4   6.5e+03       8      17 ..     117     126 ..     117     128 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
      HTH_38 10 ReeIerll.aeGlslreIArrLgrspsTIsR 39
                R+ I + + ++G+++++ A + g+ +sT+ R
  KIR62921.1 17 RRAIDDAReERGWTVSDLASHTGVGRSTVFR 47
                889999995599*****************99 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.4
      HTH_38   8 eeReeIerll 17 
                 ee ++I +ll
  KIR62921.1 117 EEKHHIRDLL 126
                 6899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 961.27
//
Query:       KIR62922.1  [L=153]
Description: hypothetical protein TK50_18500 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1252.50
//
Query:       KIR62923.1  [L=384]
Description: glutathione S-transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-30  105.6   0.0    4.4e-30  104.8   0.0    1.4  1  Methyltransf_32  Methyltransferase domain
    3.2e-07   30.2   0.0    5.1e-07   29.6   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    1.3e-05   25.8   0.1    2.9e-05   24.7   0.1    1.6  1  Methyltransf_25  Methyltransferase domain
     0.0012   19.4   0.1     0.0025   18.4   0.1    1.5  1  Methyltransf_11  Methyltransferase domain
     0.0029   17.2   0.7        2.7    7.4   0.4    2.9  2  TRM13            Methyltransferase TRM13
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.017   14.7   0.0    1.3  1  MTS              Methyltransferase small domain
      0.018   14.4   1.2      0.029   13.8   0.3    1.7  2  PALP             Pyridoxal-phosphate dependent enzyme
      0.073   13.8   0.0       0.24   12.1   0.0    1.9  2  Methyltransf_12  Methyltransferase domain
      0.099   12.5   0.0       0.16   11.8   0.0    1.3  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8   0.0   2.2e-33   4.4e-30       2     158 .]     149     284 ..     148     284 .. 0.96

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 2.2e-33
  Methyltransf_32   2 KlheverlaelvakllkelakesgaltvvDvGaGkgYLsfvlal..kekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsieeat 93 
                      K+++v+ +++ +a++l +  +  g+l+vvD+G+G++YL+f+ +   +++ + +++vg+d++e+  +++ ++a +lg  +++r+ f  ++i++a 
       KIR62923.1 149 KRRQVDAFLRALAATLPD--DLAGPLRVVDLGCGNAYLTFAAYRylTQRGLDVRLVGVDVREDQRQRNTELAGRLG--WADRVTFVAGTIADAV 238
                      99************9999..899********************9988888**************************..*************997 PP

  Methyltransf_32  94 ssktltkkveaeeekeeqeekesvdvligLHaCdtltdtalrlalekeakllvlvpCCyhelaee 158
                                          +  +d++++LHaCdt+td+al+ a++++a++++++pCC+h+la++
       KIR62923.1 239 V-------------------DPAPDLVLALHACDTATDEALARAVRWDARWVLAAPCCHHDLAAQ 284
                      6...................899***************************************975 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   2.5e-10   5.1e-07       5      67 ..     172     238 ..     168     269 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2.5e-10
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgp...kaevvGiDiseeaielArenaqklgld.nveFeqgdieele 67 
                      lrv+DlGCG+ +ltf++++ l +   + ++vG+D  e+  ++ +e a +lg   +v+F +g i ++ 
       KIR62923.1 172 LRVVDLGCGNAYLTFAAYRYLTQrglDVRLVGVDVREDQRQRNTELAGRLGWAdRVTFVAGTIADAV 238
                      79*****************4444334888**********************998*******999854 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   1.5e-08   2.9e-05       1      86 [.     174     264 ..     174     271 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.5e-08
                      EEEET-TTSHHHHHHHCTS...T.SSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl...g.kakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekal 86 
                      v+dlGcG+  lt+a+ + l   g + +++gvD+ e++ ++  e a + g+  +v+fv g + d   +    Dlv++ +a    +de l++a+
       KIR62923.1 174 VVDLGCGNAYLTFAAYRYLtqrGlDVRLVGVDVREDQRQRNTELAGRLGWadRVTFVAGTIADAVVDP-APDLVLALHACDTATDEALARAV 264
                      89************99998875589********************9999999*********9986554.789***96555555544444444 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   1.2e-06    0.0025       1      85 [.     175     264 ..     175     271 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.2e-06
                      EEET-TTSHHHHHHH....HTT..SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaeala....krg..arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeia 85 
                      +d+GcG+ +l+ a      +rg   r+vgvD+ + ++++  e a + g   +v+fv +++ +  + d   Dlv++ ++ ++    ++al+ ++
       KIR62923.1 175 VDLGCGNAYLTFAAYryltQRGldVRLVGVDVREDQRQRNTELAGRLGWadRVTFVAGTIAD-AVVDPAPDLVLALHACDTAT--DEALARAV 264
                      59********9999955556669**************9999999999999*9*********9.7888899****999999883..34444444 PP

>> TRM13  Methyltransferase TRM13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.4    0.0014       2.7      99     142 ..     244     280 ..     161     309 .. 0.73
   2 !    6.4   0.0    0.0029       5.7     226     261 ..     311     346 ..     305     347 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0014
       TRM13  99 vvavsKHLCGaATDLtLrcllnsekaskkakleglliAlCChhv 142
                  ++++ H C +ATD +L   ++ ++       + +l A CChh 
  KIR62923.1 244 DLVLALHACDTATDEALARAVRWDA-------RWVLAAPCCHHD 280
                 4667779999999999988888777.......57999******6 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0029
       TRM13 226 lidegRllalkekgfeaelvkYvekevslEnvlLla 261
                 l d  R+  l+ +g+ +e+v++v++  ++ n+l+ a
  KIR62923.1 311 LTDSLRAALLRLHGYRTEVVEFVDSRHTPRNLLIRA 346
                 77999**************************99865 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   8.6e-06     0.017      14      78 ..     151     214 ..     147     268 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.6e-06
                 TS--HHHHHHHHHCHCCTCS..EEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHT CS
         MTS  14 dklDkGsklLletlpkelsg..kvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenlean 78 
                 +++D+  + L+ tlp++l+g  +v+DlGcG+ +l+ a+ +   +     +dv    +++ +   ++n
  KIR62923.1 151 RQVDAFLRALAATLPDDLAGplRVVDLGCGNAYLTFAAYRYLTQ---RGLDVRLVGVDVREDQRQRN 214
                 678899999*******9665236************999887776...45566666666555555554 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.84   1.7e+03     183     214 ..      10      55 ..       4      85 .. 0.57
   2 ?   13.8   0.3   1.5e-05     0.029     146     274 ..     160     284 ..      90     295 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.84
                 TT-EEEEEEECTTCGGTTCCS..S.SS..B...............S CS
        PALP 183 pdvrvigvepegsdalarslragrrvtvpvs..............d 214
                 ++vr +  +p+   a+a+++r+g+r +v  +               
  KIR62923.1  10 TEVRALLLDPALTRAVAAGRRKGHRPSVVRAelrpvvlkagprlqL 55 
                 5677777777777777777777777666655555555555555441 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCCS..S.SS..B.....SSS.CCSTCSCGTTCCHHHHSEEEEEE CS
        PALP 146 iglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarslragrrvtvpvs....dtiadglavgspselafelldrlvdei 240
                 +++ + ++l g + +v +++G++ l  + +++l +r+ dvr++gv++ +     ++  agr    +       tiad++  + + +l+  l+    d  
  KIR62923.1 160 LAATLPDDLAGPLRVVDLGCGNAYLTFAAYRYLTQRGLDVRLVGVDVREDQRQRNTELAGRLGWADRVtfvaGTIADAVVDP-APDLV--LALHACD-- 253
                 33334478889999999****************************7774444444443444333333311246666666666.33333..3333344.. PP

                 EEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH CS
        PALP 241 vtvsdeealeamrllarregivvepssaaalaal 274
                  t +de+ ++a+r+ a    +++ p++++ laa 
  KIR62923.1 254 -TATDEALARAVRWDA--RWVLAAPCCHHDLAAQ 284
                 .588899999999888..6777778888888876 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012      0.24       1      78 [.     175     254 ..     175     266 .. 0.73
   2 ?   -3.6   0.0         9   1.8e+04      27      52 ..     309     334 ..     307     339 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
  Methyltransf_12   1 LeiGcGtGsllrallekl....pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhh 78 
                      +++GcG++ l++a  ++l     d++++gvD+ +++  ++ ++la r +  +++v++ a  ++d     + Dlv+a++++  
       KIR62923.1 175 VDLGCGNAYLTFAAYRYLtqrgLDVRLVGVDVREDQR-QRNTELAGRLG-WADRVTFVAGTIADAVVDPAPDLVLALHACDT 254
                      59***************9**99***************.55555555443.45566666666555444447788877776655 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 9
  Methyltransf_12  27 Dispsaiedakeklakrennnnnnve 52 
                      D+ ++++ +a  +l+ ++ + +++v+
       KIR62923.1 309 DVLTDSLRAALLRLHGYRTEVVEFVD 334
                      66667777788888888877776665 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.9e-05      0.16       4      60 ..     152     214 ..     147     295 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.9e-05
  Methyltransf_23   4 qreeelsdklerllpklraggrvLdiGcGtGil....levlrengf..svtgvDlspeaveia 60 
                      q+  +l+++ + l++ l  + rv+d+GcG  +l     ++l ++g    ++gvD ++ + ++ 
       KIR62923.1 152 QVDAFLRALAATLPDDLAGPLRVVDLGCGNAYLtfaaYRYLTQRGLdvRLVGVDVREDQRQRN 214
                      333344444444444467777**********87444456667788777899999998777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2628.10
//
Query:       KIR62924.1  [L=553]
Description: DEAD/DEAH box helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-47  160.5   0.0    1.1e-46  158.9   0.0    1.7  2  DEAD             DEAD/DEAH box helicase
      3e-30  104.8   0.0    1.3e-29  102.7   0.1    2.0  2  Helicase_C       Helicase conserved C-terminal domain
     0.0036   17.3   0.0      0.006   16.6   0.0    1.3  1  ResIII           Type III restriction enzyme, res subunit
     0.0064   15.9   0.0      0.011   15.1   0.0    1.3  1  CMS1             U3-containing 90S pre-ribosomal complex subu
  ------ inclusion threshold ------
      0.016   15.2   0.0       0.03   14.3   0.0    1.4  1  Methyltransf_17  S-adenosyl-L-methionine methyltransferase
       0.48   10.7   1.8        1.1    9.5   0.1    2.3  2  AAA_22           AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.9   0.0   3.6e-50   1.1e-46       2     172 ..      50     215 ..      49     219 .. 0.96
   2 ?   -1.3   0.0      0.52   1.5e+03      77     105 ..     298     327 ..     257     336 .. 0.70

  Alignments for each domain:
  == domain 1  score: 158.9 bits;  conditional E-value: 3.6e-50
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS..TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet..kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngv 98 
                 +iQ+ aip++l+g d++++a+TG+GKTl f +p+l++v+     g+  p+al+v+PtreL  q++++l   + + ++rvl i+ggva++ q+++l++gv
  KIR62924.1  50 AIQEYAIPIALRGVDMIGQAPTGTGKTLGFGVPLLERVFAPaeGGDGVPQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQIDALRKGV 148
                 79************************************9878779999**************************9************************ PP

                 SEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  99 divvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkd 172
                 +i+vgtpgrl+dl ++++l+l++vr lVlDEadr+ld gf d++++il+ l       +++rq++++SAT+p+ 
  KIR62924.1 149 EILVGTPGRLMDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAML-------PEDRQTMLFSATMPDP 215
                 ***************************************************.......67899********965 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.52
                 EEEEEETTSSHHHHHHHHHTT.CSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
        DEAD  77 rvlliiggvaardqlskldng.vdivvgtp 105
                  v+  +g+ a+++ l+++++g +di+v+t 
  KIR62924.1 298 AVHGDLGQGARERALRAFRAGkIDILVATD 327
                 4445577888888899998777****9995 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.84   2.5e+03      18      60 ..      99     145 ..      96     154 .. 0.73
   2 !  102.7   0.1   4.5e-33   1.3e-29       2     111 .]     256     364 ..     255     364 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.84
                 EEEEEESSHH...HHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHH CS
  Helicase_C  18 kilifvntid...rlek.vklllekkgikvavlhgelpqnereeile 60 
                 ++l++v+t++   ++ k ++   +++g++v++++g    + ++++l+
  KIR62924.1  99 QALVVVPTRElgiQVAKdLDAAGRTRGVRVLPIYGGVAYEPQIDALR 145
                 78999999998664443445556666999999999988877777766 PP

  == domain 2  score: 102.7 bits;  conditional E-value: 4.5e-33
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekk.gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvt 98 
                 k+e++ ++l + e +g ++if++t++ +++ ++ l   + g+ va++hg+l q  re++l++f++g++d+L+atdva+rG+d+ +v++Vin+d+p++ +
  KIR62924.1 256 KIEIVARIL-QAEGRGLTMIFTRTKRAADRvAEDL--DFrGFAVAAVHGDLGQGARERALRAFRAGKIDILVATDVAARGLDVSGVTHVINYDCPEDQD 351
                 899999999.999*************998655666..4479********************************************************** PP

                 HHHHHHTTSSSTT CS
  Helicase_C  99 syiqriGRtgRag 111
                 +y +riGRtgRag
  KIR62924.1 352 TYTHRIGRTGRAG 364
                 ***********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     2e-06     0.006      30     170 ..      68     213 ..      52     214 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2e-06
                 EESTTSTHHHHH.HHHHHHH-S.........-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--.......-SEEEEEHHHHHHTH. CS
      ResIII  30 kmaTGtGKTlva.aklierllkkgkee....kflflvprkslleqtleefkkflseayke....igkkvsgdkkkakekdstnkkilvttiqsldadse 119
                 +++TGtGKTl   + l er++  ++      ++l++vp+++l  q  +++     +   +     g++  + + +a    ++  +ilv t  +l   + 
  KIR62924.1  68 QAPTGTGKTLGFgVPLLERVFAPAEGGdgvpQALVVVPTRELGIQVAKDLDAAGRTRGVRvlpiYGGVAYEPQIDA---LRKGVEILVGTPGRLMDLQ- 162
                 689*******99999****999655448999****************99988888776665554333333333333...68899**********9999. PP

                 .......HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS-S CS
      ResIII 120 eeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTATpe 170
                     ++++l+ dr   ++ DEa r+ +    + +++il +++e    + ++AT++
  KIR62924.1 163 ----KQKHLRLDRVRALVLDEADRMLDLgflDDVEKILAMLPEdRQTMLFSATMP 213
                 ....9999999*************9997665699999999866456677899975 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.8e-06     0.011     166     210 ..     137     180 ..      87     210 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.8e-06
        CMS1 166 leesvtylkksrigiavGtpgRildLleeeslsvdeLkrivlDas 210
                  e ++  l+k  + i vGtpgR++dL +++ l++d ++ +vlD +
  KIR62924.1 137 YEPQIDALRK-GVEILVGTPGRLMDLQKQKHLRLDRVRALVLDEA 180
                 5667777765.48999*************************9864 PP

>> Methyltransf_17  S-adenosyl-L-methionine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   9.9e-06      0.03      81     134 ..     283     338 ..     256     348 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.9e-06
                      HHHHHHHHHH-S-EEEEEE----S-HHHH..HHHHHHHHHHHGGGEEEEEEEEESS CS
  Methyltransf_17  81 eetlealakigakaalvhaDlGtgykekd..avtatrlsdliagllapgGlavsgq 134
                      + ++e+l++ g  +a vh DlG g +e+   a  a ++  l+a+ +a +Gl vsg 
       KIR62924.1 283 DRVAEDLDFRGFAVAAVHGDLGQGARERAlrAFRAGKIDILVATDVAARGLDVSGV 338
                      567889*******************998622556889*****************96 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.66     2e+03      12      20 ..      69      77 ..      68      79 .. 0.88
   2 ?    9.5   0.1   0.00038       1.1      77     112 ..     157     192 ..     136     213 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.66
      AAA_22 12 GesGtGKTt 20
                +++GtGKT+
  KIR62924.1 69 APTGTGKTL 77
                69******7 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00038
      AAA_22  77 ell.ealeqalraravielliiDEaqh.lr.s.eealeeL 112
                 +l+  + +++lr  +v ++l++DEa++ l+        ++
  KIR62924.1 157 RLMdLQKQKHLRLDRV-RALVLDEADRmLDlGfL---DDV 192
                 6666778888888888.**********6634242...332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3854.11
//
Query:       KIR62925.1  [L=75]
Description: ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-29  102.2   0.1    1.5e-29  102.1   0.1    1.0  1  DUF3107   Protein of unknown function (DUF3107)
  ------ inclusion threshold ------
      0.076   12.9   0.0       0.11   12.4   0.0    1.3  1  DUF903    Bacterial protein of unknown function (DUF903)
       0.09   12.9   0.0       0.11   12.6   0.0    1.1  1  TraI_2B   DNA relaxase TraI 2B/2B-like domain


Domain annotation for each model (and alignments):
>> DUF3107  Protein of unknown function (DUF3107)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.1   2.5e-33   1.5e-29       1      72 [.       1      72 [.       1      73 [. 0.99

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 2.5e-33
     DUF3107  1 meikIGvqdsaRelvieseqsadeveaaveealagdegvltLeDekGrrvlvpaakiaYVeiGseekrrVGF 72
                me+kIGvq ++Relv+es+qs+ e+e+ v++a+a+deg+l+L+DekGrrv+vp +k+aYVei++++ r VGF
  KIR62925.1  1 MEVKIGVQYAPRELVLESAQSPAEIEQIVTDAFAKDEGTLSLTDEKGRRVIVPVNKVAYVEIAEASPRAVGF 72
                9*********************************************************************** PP

>> DUF903  Bacterial protein of unknown function (DUF903)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.9e-05      0.11      22      46 ..      35      59 ..      25      61 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
                TTTSCEEEEBTTS-EEEEEGGGEEE CS
      DUF903 22 kdtGmyeYeDeeGkevqInkddVkq 46
                kd G+++ +De+G++v ++ + V+ 
  KIR62925.1 35 KDEGTLSLTDEKGRRVIVPVNKVAY 59
                799***************9999975 PP

>> TraI_2B  DNA relaxase TraI 2B/2B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.8e-05      0.11      20      64 ..      14      57 ..       4      59 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.8e-05
     TraI_2B 20 mVlEdrsekketreryvidrvhadtrmLslvdedGvlqrlklsal 64
                +VlE  +   e+  + v d   +d  +Lsl de+G +  + ++++
  KIR62925.1 14 LVLESAQSPAEIE-QIVTDAFAKDEGTLSLTDEKGRRVIVPVNKV 57
                7999999998988.9*********************999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.47
# Mc/sec: 474.92
//
Query:       KIR62926.1  [L=212]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-18   64.7   0.8      1e-17   63.6   0.2    1.9  2  TetR_N       Bacterial regulatory proteins, tetR family
     0.0073   17.0   1.7     0.0073   17.0   1.7    2.0  2  TetR_C_33    Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
      0.024   14.8   0.0      0.049   13.8   0.0    1.5  1  HTH_Tnp_1_2  Helix-turn-helix of insertion element transposas
       0.05   13.9   0.2      0.083   13.2   0.2    1.3  1  TetR_C_24    Tetracyclin repressor-like, C-terminal domain
      0.054   13.3   2.9       0.13   12.1   0.0    3.1  4  LacI         Bacterial regulatory proteins, lacI family
      0.071   13.3   0.0        0.1   12.8   0.0    1.2  1  TetR_C_4     YsiA-like protein, C-terminal region


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.2   3.4e-21     1e-17       1      47 []      26      72 ..      26      72 .. 0.97
   2 ?   -2.0   0.0       1.1   3.3e+03      17      31 ..     144     158 ..     138     159 .. 0.72

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 3.4e-21
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                +l+aA e+f  +Gy+a+ +++IA+rAGvsk+ lY++Fp+K eL++al
  KIR62926.1 26 LLAAAQEVFVAQGYHAAAMDDIAERAGVSKPVLYQHFPGKMELYLAL 72
                79******************************************986 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.1
                 --HHHHHHHHTSSHH CS
      TetR_N  17 ttvreIAkrAGvskg 31 
                 + ++ I +  Gvs++
  KIR62926.1 144 AITDTIISDTGVSRA 158
                 557788889999997 PP

>> TetR_C_33  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.4   7.3e+03      27      37 ..      36      45 ..      14      54 .. 0.56
   2 !   17.0   1.7   2.5e-06    0.0073       3      97 ..     100     194 ..      98     210 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.4
                -TT-S-HGHHC CS
   TetR_C_33 27 vpgyaapdela 37
                ++gy+a+ ++ 
  KIR62926.1 36 AQGYHAA-AMD 45
                2344443.333 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 2.5e-06
                 HHHHHHHHHHHH-HHHHHHCCSS--TT-S-HGHHCCCCHHHHHHHHHHHGGG---TH--CC.HHHHHHHHHHHHHHHH....HHHHCTTTTS.SS-HHH CS
   TetR_C_33   3 alarayrrfAlahpaeYallfgspvpgyaapdelaaagarvlalllaalaalvaaglppad.avaaaralwaalhGlv....sLelfghfgl.padpda 95 
                 a  ray +f+  + + ++l+f+s  +  ++p ++++  +rv +  +aa+ ++     +++   +a a +l + l G++    ++ l+g+ ++  a+++a
  KIR62926.1 100 ASVRAYFDFVDHESEAFRLVFESDLR--NDP-AVRQRVERVEQGCIAAITDT---IISDTGvSRAHAELLASGLVGAAetaaQFWLAGGRQVpKAEAEA 192
                 778******************88886..778.89999999999999988888...33333335555555566666655000044444444443344444 PP

                 HH CS
   TetR_C_33  96 lf 97 
                 l+
  KIR62926.1 193 LV 194
                 44 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.6e-05     0.049      15      46 ..      30      61 ..      18     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHH--S-HHHHHHHHTS-HHHHHHH CS
  HTH_Tnp_1_2 15 aaellvendyekltldeiaeevgvsrsTlykW 46
                 a e+ v + y+  ++d+iae  gvs+  ly+ 
   KIR62926.1 30 AQEVFVAQGYHAAAMDDIAERAGVSKPVLYQH 61
                 44899*************************96 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   2.8e-05     0.083       3     108 ..      93     195 ..      91     199 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.8e-05
                 SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHH.HHTTSB-SS-HHHHHHHHHHHHHCHHHC--TTSSS-HH CS
   TetR_C_24   3 spaerLralvrahveviaeereeaavllrelraLspehreeiralrreyerllrdlieeG.vaagefedldpklaalailgmlnwvyrWyrpdGplspe 100
                 + +er  a vra+ +++ +e e++++++++    +p+    +r++ +++e+   ++i++  + +  +++++++l+a  ++g+    ++ + ++G+  p+
  KIR62926.1  93 DNKERVSASVRAYFDFVDHESEAFRLVFESDLRNDPA----VRQRVERVEQGCIAAITDTiISDTGVSRAHAELLASGLVGAAETAAQFWLAGGRQVPK 187
                 678**********************999885444555....55555555555555444440445555999******************999****9999 PP

                 HHHHHHHH CS
   TetR_C_24 101 eiadqyad 108
                 + a++++ 
  KIR62926.1 188 AEAEALVA 195
                 98888775 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.3e-05      0.13       2      13 ..      44      55 ..      43      56 .. 0.93
   2 ?   -1.2   0.1      0.62   1.9e+03      30      39 ..      80      89 ..      78      96 .. 0.80
   3 ?   -2.0   0.0       1.1   3.2e+03      22      31 ..      94     103 ..      91     104 .. 0.71
   4 ?   -2.2   0.0       1.3   3.8e+03      29      37 ..     129     137 ..     124     139 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.3e-05
                HHHHHHHCTS-H CS
        LacI  2 ikDVArlAGVSk 13
                ++D+A++AGVSk
  KIR62926.1 44 MDDIAERAGVSK 55
                89*********8 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.62
                HHHHHHHHHH CS
        LacI 30 trerVeaame 39
                +  +V+ am+
  KIR62926.1 80 IVAKVHDAMR 89
                6789999998 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.1
                 TSSSSTHHHH CS
        LacI  22 nkerVseetr 31 
                 nkerVs++ r
  KIR62926.1  94 NKERVSASVR 103
                 5688888766 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.3
                 HHHHHHHHH CS
        LacI  29 etrerVeaa 37 
                 + r+rVe++
  KIR62926.1 129 AVRQRVERV 137
                 456777665 PP

>> TetR_C_4  YsiA-like protein, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.4e-05       0.1       5      79 ..      77     152 ..      73     165 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHC-HH.HHHHHHTTCCGSSHHHHHHHHHHHHHHHHHH.HHHHHH CS
    TetR_C_4   5 lgqfvekikeeikekesaeeklkllvekhfsqlsadke.laivtqlelrqsnlelrlkinevlkgyltll.deiiae 79 
                  +++v k++++++++++ +e+++  v+ +f  +++++e + +v   +lr  +  +r++++ v +g ++ + d ii +
  KIR62926.1  77 CDAIVAKVHDAMRGTNDNKERVSASVRAYFDFVDHESEaFRLVFESDLRN-DPAVRQRVERVEQGCIAAItDTIISD 152
                 56899***************************9877542889******96.789***********997662666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1367.11
//
Query:       KIR62927.1  [L=960]
Description: hypothetical protein TK50_18525 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (960 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      141  (0.00786435); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.23s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 7387.79
//
Query:       KIR62928.1  [L=314]
Description: lipoprotein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-29  103.5   0.0    3.3e-29  102.1   0.0    1.5  2  DUF3152       Protein of unknown function (DUF3152)
     0.0081   16.3   0.1      0.014   15.6   0.1    1.3  1  Reprolysin_5  Metallo-peptidase family M12
  ------ inclusion threshold ------
      0.031   14.8   0.1      0.042   14.4   0.1    1.3  1  Reprolysin_3  Metallo-peptidase family M12B Reprolysin-like


Domain annotation for each model (and alignments):
>> DUF3152  Protein of unknown function (DUF3152)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.0   5.5e-33   3.3e-29       7     179 ..     120     294 ..     116     299 .. 0.84
   2 ?   -0.6   0.1      0.16   9.3e+02     198     206 ..     295     303 ..     293     304 .. 0.88

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 5.5e-33
     DUF3152   7 ftekgagtfrvvpgtakkvgkgkekkftyvvevengldtsaygGddafaelvdatlanpksWtkdpkfafervdegkdPdlrislvskettreaC...g 102
                 ++++g g fr    +++ +g       +y+v ve+    +     + f+++v+++la p sW++ +++ ++rv   ++ d+ + l++  t+  +C   g
  KIR62928.1 120 VPSAGGGGFRYDDRPGAVLGTA-GALRRYRVAVEREAGEDV----GDFGTAVQEALAGPGSWVDSGRLRLQRVPGAARHDFTVYLATAGTAGRMCaagG 213
                 5666666666666666666665.567788888888887777....459***********************************************9998 PP

     DUF3152 103 ndiele....tsCkkaaedrvlinearWvrGavpfegd...igsyrqylinhevGhaiGyaaheaCekdGelaPvmmqqtlsvs 179
                  di++     tsC+ +   +v+in  rW      f ++   +  yr y++nhevGh++G+  he C k+G  aPvmmqqtl+++
  KIR62928.1 214 VDIRVGgrpyTSCRAP--GKVIINLDRWRLSVPHFVDAgvpLAVYRTYVVNHEVGHQLGH-GHERCPKPGRPAPVMMQQTLFLN 294
                 9999865566899985..68********7766666554334678****************.********************987 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.16
     DUF3152 198 tCkvnpWpy 206
                  C +npWpy
  KIR62928.1 295 GCVANPWPY 303
                 59******9 PP

>> Reprolysin_5  Metallo-peptidase family M12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   2.3e-06     0.014     110     161 ..     199     276 ..     189     290 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.3e-06
  Reprolysin_5 110 lAwlgqlcnsgsagsvstrveks..........................nsvvvstatevqvvaHElGHnfGavHDcd 161
                   lA +g+ + + +ag+v+ rv +                             +v+ + +  +vv HE+GH++G  H  +
    KIR62928.1 199 LATAGTAGRMCAAGGVDIRVGGRpytscrapgkviinldrwrlsvphfvDAGVPLAVYRTYVVNHEVGHQLGHGHERC 276
                   56666666666666666665555666677777778888888888888888888889999****************887 PP

>> Reprolysin_3  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1     7e-06     0.042     108     124 .]     257     274 ..     196     274 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7e-06
  Reprolysin_3 108 a.dtvaHEiGHnfganHt 124
                   + ++v HE+GH++g  H+
    KIR62928.1 257 RtYVVNHEVGHQLGHGHE 274
                   1599***********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2454.36
//
Query:       KIR62929.1  [L=302]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-31  109.2   0.0    4.8e-29  101.5   0.0    2.6  1  DUF3152       Protein of unknown function (DUF3152)
  ------ inclusion threshold ------
       0.01   15.3   0.0      0.017   14.6   0.0    1.2  1  Zn_peptidase  Putative neutral zinc metallopeptidase
       0.11   12.6   0.0       0.15   12.2   0.0    1.2  1  Reprolysin_5  Metallo-peptidase family M12
       0.25   11.9   0.0       0.34   11.5   0.0    1.3  1  Reprolysin_3  Metallo-peptidase family M12B Reprolysin-like


Domain annotation for each model (and alignments):
>> DUF3152  Protein of unknown function (DUF3152)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.0   1.1e-32   4.8e-29       6     179 ..      88     279 ..      84     289 .. 0.91

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 1.1e-32
     DUF3152   6 eftekgagtfrvvpgtakkvgkgkekkftyvvevengldtsaygGddafaelvdatlanpksWtkdpkfafervdegk..................... 83 
                  ++++g g+f + +g+++  g g   + +y+v ve+   ++     dafa++vd++l +p+sW++ +++ ++rv   +                     
  KIR62929.1  88 GWPTSGPGRFAAAAGQSPVQGTG-GPVRRYRVLVERDTGQDP----DAFAAVVDEALGDPRSWIASGDLRLQRVAGPAapagpeaaadaapsadasdvs 181
                 56778999*************99.79999*****99888877....9***************************8655566677788889999999999 PP

     DUF3152  84 ..dPdlrislvskettreaC...gndieletsCkkaaedrvlinearWvrGavpfegdigsyrqylinhevGhaiGyaaheaCekdGelaPvmmqqtls 177
                   + d+ + l+++ t + +C   g  +e  tsC+ +   +v+in arW+     +   ++ yr y++nhevGh +G   heaC  +Ge aPvm+qqt++
  KIR62929.1 182 apEADFTVYLATPVTSERMCalgGLRTERYTSCRLPG--QVIINLARWMEAVPDYGAPLDVYRAYVVNHEVGHELGE-LHEACPGPGEPAPVMQQQTYG 277
                 8888****************8877888888****965..7**********9999**********************9.9******************99 PP

     DUF3152 178 vs 179
                 ++
  KIR62929.1 278 LD 279
                 87 PP

>> Zn_peptidase  Putative neutral zinc metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.7e-06     0.017     140     181 ..     214     255 ..     201     260 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.7e-06
  Zn_peptidase 140 CPadrkvyldlsffdelkqklgaaGdfaaayviahevGhhvq 181
                   C   ++v ++l+ + e    +ga  d+ +ayv+ hevGh + 
    KIR62929.1 214 CRLPGQVIINLARWMEAVPDYGAPLDVYRAYVVNHEVGHELG 255
                   55667888888889999999*******************875 PP

>> Reprolysin_5  Metallo-peptidase family M12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.4e-05      0.15     132     161 ..     221     261 ..     153     281 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.4e-05
  Reprolysin_5 132 s...........nsvvvstatevqvvaHElGHnfGavHDcd 161
                                ++++ + + ++vv HE+GH +G  H  +
    KIR62929.1 221 IinlarwmeavpDYGAPLDVYRAYVVNHEVGHELGELHEAC 261
                   2445666667777888889999*************999877 PP

>> Reprolysin_3  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.5e-05      0.34     106     123 ..     241     258 ..     177     259 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.5e-05
  Reprolysin_3 106 vgadtvaHEiGHnfganH 123
                     a++v HE+GH +g  H
    KIR62929.1 241 YRAYVVNHEVGHELGELH 258
                   3349***********988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2274.96
//
Query:       KIR62930.1  [L=293]
Description: squalene-hopene cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-12   47.5   0.2      1e-05   25.1   0.0    4.2  4  Prenyltrans      Prenyltransferase and squalene oxidase repea
    6.4e-10   38.6   1.3    1.6e-06   27.5   0.1    2.3  2  SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
    2.3e-06   26.9   0.1      0.012   14.8   0.0    2.7  2  SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
  ------ inclusion threshold ------
      0.033   13.2   0.0       0.16   11.0   0.0    1.9  2  TED_complement   A-macroglobulin TED domain


Domain annotation for each model (and alignments):
>> Prenyltrans  Prenyltransferase and squalene oxidase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0088        39      14      28 ..      44      58 ..      44      66 .. 0.85
   2 !   25.1   0.0   2.3e-09     1e-05       4      24 ..      83     103 ..      80     109 .. 0.91
   3 ?    0.5   0.0      0.11   5.1e+02       3      20 ..     177     194 ..     176     198 .. 0.83
   4 !   11.9   0.0   3.3e-05      0.15      11      30 ..     263     284 ..     259     291 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0088
                 SHTTS-BBSSTTSSB CS
  Prenyltrans 14 QnedGGwggrpgses 28
                 Q + GGw   +g ++
   KIR62930.1 44 QTPTGGWPAVWGADV 58
                 789********9954 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 2.3e-09
                  HHHHHHHHHHSHTTS-BBSST CS
  Prenyltrans   4 ekavefLlscQnedGGwggrp 24 
                  ++a+++L s+Q++dGGw ++p
   KIR62930.1  83 RRALDWLASRQQADGGWEEDP 103
                  789****************98 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.11
                  HHHHHHHHHHHSHTTS-B CS
  Prenyltrans   3 vekavefLlscQnedGGw 20 
                  v++av+ L    ++dG +
   KIR62930.1 177 VQTAVQALAGQLQPDGTF 194
                  6789999999999**988 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 3.3e-05
                  HHHSHTTS-BBSSTTS..SBBH CS
  Prenyltrans  11 lscQnedGGwggrpgs..esdt 30 
                    +Q+ dGGw ++ g+  +++t
   KIR62930.1 263 AETQRSDGGWESDDGHqfDVHT 284
                  568*************776665 PP

>> SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   3.5e-10   1.6e-06     171     236 ..      43     109 ..      33     150 .. 0.78
   2 !   10.0   0.1   7.6e-05      0.34     194     229 ..     240     275 ..     235     289 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 3.5e-10
                      HS-TTS----SSBSS..HHHHHHHHHHHHHHTT--TTSHHHHHHHHHHHTT--TTSSBB--GGGGT-G CS
  SQHop_cyclase_C 171 eqepdGsWfGrWGvn..yiyGtwsvlsalaavgedleepvirkavdWlksvqnedGGWGesaesykdp 236
                       q p G W   WG++   +  t   l  l+ +g  l +p+ r+a+dWl s+q++dGGW e+    +d 
       KIR62930.1  43 GQTPTGGWPAVWGADvaSVDATCFRLAELDDLGA-LGRPAARRALDWLASRQQADGGWEEDPALADDA 109
                      6999*********762157889999999999986.67899*******************997665554 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 7.6e-05
                      HHHHHHTT--TTSHHHHHHHHHHHTT--TTSSBB-- CS
  SQHop_cyclase_C 194 lsalaavgedleepvirkavdWlksvqnedGGWGes 229
                        al+ vg+d+++ ++  a + l ++q++dGGW  +
       KIR62930.1 240 AAALRRVGVDEQHWTLVAARRRLAETQRSDGGWESD 275
                      5799*****************************655 PP

>> SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00011       0.5     215     249 ..      65      99 ..      35     103 .. 0.71
   2 !   14.8   0.0   2.6e-06     0.012      44      83 ..     252     291 ..     233     293 .] 0.83

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00011
  SQHop_cyclase_N 215 vlkllerlplkplrkrAlrkaeewilerqeasggl 249
                      +++l+e   l +l + A r+a +w+ +rq+a+gg+
       KIR62930.1  65 CFRLAELDDLGALGRPAARRALDWLASRQQADGGW 99 
                      45555666677777778888888888888888887 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2.6e-06
  SQHop_cyclase_N  44 eeeeekiakylrsqqredGgWelypggpgdlsttveaYlA 83 
                      + +  ++++ l ++qr+dGgWe   g+++d+ tt  a  A
       KIR62930.1 252 HWTLVAARRRLAETQRSDGGWESDDGHQFDVHTTLAAIRA 291
                      445678899*************************998666 PP

>> TED_complement  A-macroglobulin TED domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.6e-05      0.16     118     167 ..      82     135 ..      63     150 .. 0.82
   2 ?   -0.8   0.0      0.13   5.9e+02     287     300 ..     262     275 ..     236     291 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.6e-05
                     HHHHHHHHHTTB-TTS-B--SS-SS-T....TCSSSTHCHHHHHHHHHHHHHHH CS
  TED_complement 118 iseslewLlseQkedGsFkeegsllnr....kmkggvekevtLtAyvliaLlea 167
                      +++l wL+s+Q++dG ++e+  l +     +  g  e +++LtA v+  L+ a
      KIR62930.1  82 ARRALDWLASRQQADGGWEEDPALADDapwwARPGDPEARLYLTATVTFWLTVA 135
                     57899*******************9997765566667999*****999988765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.13
                     HHHTHTSTSSSSSH CS
  TED_complement 287 LtkqrnsaGGFsSt 300
                     L++ ++s+GG++S 
      KIR62930.1 262 LAETQRSDGGWESD 275
                     77788888888884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2018.07
//
Query:       KIR62931.1  [L=82]
Description: hypothetical protein TK50_18555 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0095   16.3   0.1      0.011   16.1   0.1    1.1  1  CopD      Copper resistance protein D


Domain annotation for each model (and alignments):
>> CopD  Copper resistance protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   6.2e-07     0.011      12      86 ..       1      73 [.       1      78 [. 0.59

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.2e-07
        CopD 12 laavavvlvtGvvnallrvgl.agllttayGrlllaKlalllvllalaalnrfrlvprleaatgaggqalrhrlrr 86
                +++v +v++tG++++++   + ++ll+ a+ +ll+   ++ + l+a++ +   +l p  ++  +++ +++r++ rr
  KIR62931.1  1 MFLVFAVVATGLLLVWRT--WdVELLEYAWFQLLVFL-VVAAPLVAMRFWGEGALPPDEATPGRRRPRGQREKPRR 73
                57899*********9999..88999997776555443.33333333333333333333333344555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 605.89
//
Query:       KIR62932.1  [L=414]
Description: gamma-glutamyl phosphate reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-17   63.1  15.0    1.6e-13   50.0  10.0    2.1  2  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0  10.0   8.7e-18   1.6e-13      38     296 ..      10     281 ..       2     294 .. 0.71
   2 !   15.8   0.2   2.1e-07    0.0037     375     437 ..     315     376 ..     296     405 .. 0.79

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 8.7e-18
                 HHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHH........HHHHHHHH---HHHHHH.H...HHHHHHHHHHHHHHHHHHSEEEEEEC...TTEEEE CS
      Aldedh  38 AkeafkawaklpaeeRaeiLrkaadlleerkeel........aeletletGkplaeara.e...veeaidvlryyaelaeklegevlpss...egklal 121
                 A+ a +a a  + +++ + L ++ad+l +r  e+        a+  ++     + +  a +   v+ ++d lr +a+l + + gev+  s   +g +  
  KIR62932.1  10 ARGAAEALAVATRTTKDAALVAMADALVARTPEIvtanaadlAAGRAAGLSAAILDRLAlDaarVAGIADALREMAALPDPV-GEVVRGStlpNGLELR 107
                 3334444444444444455555555555555555000000005544444444444444334000333444444444443333.3444442476889999 PP

                 EEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHT....TS-TTSEEE--SSTCCHHHHHHH-TT.ESEEEEES-H CS
      Aldedh 122 vrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeea....glPkgvlnvvtgsgsevgealvehpe.vdkvsftGst 215
                  +r P+Gvvg+I  ++   ++++ ++ ++l  GN+ +l+ +  +++s ++l+ ++++a    glP+++++++  s ++  ++l+++++ vd++   G+ 
  KIR62932.1 108 QVRVPFGVVGII--YEARPNVTVDAAGICLKSGNAALLRGSGSAAHSNAALVAVLRDAiasaGLPADAVQLLDASSRDSVKELMRARGlVDVLIPRGGA 204
                 99**********..89*******************************999999988877777*************999999999887648899999*** PP

                 HHHHHHHHHHHCTTSEEEEEE-.--EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT- CS
      Aldedh 216 evgrkiakaaaknlkrvtlElG.GknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakkl 296
                 +  r ++++++    +v +E+G G+ ++ v + aDl kav+ ++++ +     +C +a+ llv+ s++d+f+ ++++a+++ 
  KIR62932.1 205 SLIRTVVEEST---VPV-IETGvGNCHVYVDAAADLAKAVAITLNAKTQRL-STCNTAESLLVHASVADAFLPAVLAAFAEA 281
                 *******9988...555.56663788888999************9888765.79********************99998765 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.1e-07
                 EEEEEESSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB- CS
      Aldedh 375 lsvikfkdeeeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfg 437
                 +sv+ +++++ a++       G + +++t++ + a+++++r++a  v++N st+++     fg
  KIR62932.1 315 ISVTVVDSLDAAVAHIRRYGTGHTEAIVTDSQSAAREFVARVDAAAVMVNASTRFTDGG-EFG 376
                 799*************************************************9998888.554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2754.72
//
Query:       KIR62933.1  [L=369]
Description: gamma-glutamyl kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-39  134.9   2.8    3.4e-39  134.9   2.8    1.4  2  AA_kinase  Amino acid kinase family
    1.1e-16   60.5   0.2    3.8e-16   58.8   0.2    1.9  1  PUA        PUA domain
      0.001   18.8   0.0     0.0028   17.4   0.0    1.8  1  PUA_3      PUA-like domain


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   2.8   5.7e-43   3.4e-39       2     240 ..      10     238 ..       9     239 .. 0.94
   2 ?   -3.3   0.0      0.88   5.3e+03     134     165 ..     317     351 ..     316     352 .. 0.66

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 5.7e-43
                 EEEEEE-TTCCCCTCC....HHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHT CS
   AA_kinase   2 rvVvKlGGssltdkee....aslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaa 96 
                 rvVvK+G+sslt++++    a++++l++ +a+l+ +g+++v+V++g ++++gl+ l  gls+++ +            +at++a+as+g+ l+   +aa
  KIR62933.1  10 RVVVKIGSSSLTTASGglddARVDALVDTLARLAADGREVVLVSSG-AIAAGLAPL--GLSRRPRD------------LATQQAAASVGQGLLIGRYAA 93 
                 9***********88888*****************************.*********..*******9............8******************** PP

                 THGEEEE-GGGTCEECCCE..HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCT CS
   AA_kinase  97 glpavglsaaaldateagrdegsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpd 195
                 g++ + l++ ++++t ++    + + ++++  +++++ll+ + vp++++++++ +e+   +g++D++aal+A++++A+ l++l+dVd + + dp  +  
  KIR62933.1  94 GFARHRLTVGQVLLTVDDV---TRRAHYRNAYRTLRKLLDLRAVPIVNENDTVATEEIR-FGDNDRLAALVAALVHAELLVLLSDVDALWTGDPARP-E 187
                 ****************999...****************************988888775.9*********************************997.6 PP

                 TCECCEEEHHHCHH.......CSSS.TTTHHHHCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 196 arllpeisvdeaee.......saselatgGmkvkhpaalaaarrggipvvIt 240
                  ++++ ++ +  ++         ++ +tgGm +k++aa  a   g ipvv+t
  KIR62933.1 188 STRITDVRDERDLAgvqiggaGRAGVGTGGMVTKVEAARIATGFG-IPVVLT 238
                 777777766666666******9**************999888777.999875 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.88
                 HHHTT-EEEEESEE...EEETTTEEEEE-HHHHHH CS
   AA_kinase 134 lleagvvpvltgfi...gldeegelgrgssDtiaa 165
                 l++ag  pv  g++   ++  +g lgr +++ +aa
  KIR62933.1 317 LVDAGGAPVARGLVnydAVELPGLLGRSTGELAAA 351
                 56777788888865222555555588888888887 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.2   6.3e-20   3.8e-16       1      61 [.     278     339 ..     278     350 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 6.3e-20
                 CEEEE-HHHHHHHHT.T-EEEGGGEEEEETT--TTSEEEEEETTSCEEEEEEESS-HHHHHH CS
         PUA   1 grvvvddgAvkalls.gasLlapGvvevegdfeegdvVaivdedgelvavGlanysseelak 61 
                 gr+ +d+gAv a++  ++sLl++G++ v+g f +gd V++vd +g +va+Gl+ny++ el  
  KIR62933.1 278 GRLHLDAGAVAAVVGrRKSLLPAGITAVDGAFTAGDPVDLVDAGGAPVARGLVNYDAVELPG 339
                 7899***********999****************************************9965 PP

>> PUA_3  PUA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   4.7e-07    0.0028      21      52 ..     300     331 ..     280     334 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4.7e-07
       PUA_3  21 neiasvegeledGdvVdvfsekgkflGtGyyn 52 
                   i  v+g++++Gd Vd+++++g ++++G++n
  KIR62933.1 300 AGITAVDGAFTAGDPVDLVDAGGAPVARGLVN 331
                 67889999***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2698.23
//
Query:       KIR62934.1  [L=104]
Description: cysteine methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-17   63.7   0.3    1.6e-17   63.4   0.3    1.1  1  DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA b


Domain annotation for each model (and alignments):
>> DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.3   8.7e-22   1.6e-17       2      80 ..       6      83 ..       5      84 .. 0.90

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 8.7e-22
                   HHHHHHHHHTTS-TT-BEEHHHHHHHTT....TSCHHHHHHHHHTSSBTTTSGGGGEEBTTSBCCTTTTCHHHHHHHHHHTT CS
  DNA_binding_1  2 fqqrVwellrqIpyGkvttYgeiAkllgk...pkaaraVgqalaanplailvPcHRVvgadgklggyagglerkralLeaEg 80
                   + ++V+el+++Ip+G+v++Yg++A++l++   + +ar Vg+++a+  +   vP+HRVv + g+l +   +  + ra L+aEg
     KIR62934.1  6 YVEAVLELVERIPPGRVMSYGAVADALAErsgRASARLVGSIMAR--HGGGVPWHRVVTSAGRLPPG--HEVEARARLRAEG 83
                   6689***********************99777889*********8..99**************9975..5677888899998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 787.27
//
Query:       KIR62935.1  [L=506]
Description: pyridoxal-dependent decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-15   56.8   0.0    5.3e-15   55.0   0.0    1.8  1  Pyridoxal_deC    Pyridoxal-dependent decarboxylase conserved 
    7.4e-10   38.3   0.0      3e-09   36.3   0.0    1.7  1  Aminotran_5      Aminotransferase class-V
     0.0027   17.1   5.5     0.0041   16.5   5.5    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
       0.14   12.3   0.0       0.28   11.3   0.0    1.5  1  DsrH             DsrH like protein


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   1.2e-18   5.3e-15      40     373 ..      42     357 ..       8     359 .. 0.82

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 1.2e-18
                    TTBHCSS..H....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--GGGTCCT-EEEEESSHHHHHHHHHHHHHHHHHHHHHHH CS
  Pyridoxal_deC  40 pefhkll..pagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpeeflekegggvlqvgssestllallAartkvikemkek 133
                     ++++++  pa   l  l++   a+++  ng++ ++ P l ++e+ ++     llg      + + +g +++g++es +la+ Aar  +++ + + 
     KIR62935.1  42 GRLFAYVydPAVPGLDELAAAAHASSAHVNGLDPTAFPSLLAMENALVGAASRLLGGGPGSTAPDVVGSVTSGGTESLILAVKAARD-ARPDVAAP 136
                    555555423556667788999999*******************************9886666668****************999985.45555444 PP

                    TTTS.HHHHHCCEEEEEETTS-HHHHHHHHHHT-EEEEE--BTTTBB-HHHHHHHHHHHHCTT.EEEEEEEEBS-TTT-BB--HHHHHHHHHHCT- CS
  Pyridoxal_deC 134 gkelkeaeildklvlytsdqahssvekaalvlgvklrvipldengklrgaalekaieedkekGlipffvvatlGttvlgaFddlkelgdicekydl 229
                                  +     ah +  kaa +l v l  +p+d+  +lr++a  +a+ +++   +++  v+  + +   g  d + e++ + ++ ++
     KIR62935.1 137 R-------------IAVPVTAHAAFAKAAHYLRVALDPVPVDP-VTLRPSA--AAVAAAIGP-DTV-LVACSAPSYAHGVVDPVAEIAAVAAEAGV 214
                    4.............222334899*******************9.5466654..667777766.455.6999999********************** PP

                    EEEEE-TTGGGGGGSGGGGG.......GGTTGGGESEEEEECCCCTS--SS-EEEEESSCCGCHHHH-EEECCCT.TTTTTSEECCCGSSSSSG.H CS
  Pyridoxal_deC 230 wlHvDAAyaGsaficpeirh.......llkgieradSitvnphKlllvlldcsalivkdkealqqalqleaeYLehedsdvaadlgtkaiplsr.r 317
                      HvDA ++G     p  r        +++ +  + Si+v  hK+  ++ ++s+l+ +       ++   a++ +       + + + +i   r  
     KIR62935.1 215 RCHVDACFGG--WTLPWLRRlgepvppFDFAVAGVTSISVDLHKYAYAPKGVSVLLHRTPALRAPQFFAYADWPG-------YTMVNPVIASTRsG 301
                    **********..555666655566778*******************************99887777755555555.......67888899999977 PP

                    HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEECSTTBSSEEEEE CS
  Pyridoxal_deC 318 vrilklwfvlralGveglqnqirksvelakyleklirkderfeivaevelglVcFr 373
                      i+  +  lr lG  g+ +   ++ + ++ l++ +r +    + ae+e + VcF 
     KIR62935.1 302 GPIAAAYATLRHLGEDGYLRLAAATRDAVAGLADAVRGTDGLRLLAEPESTVVCFT 357
                    88*****************************************************6 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   6.7e-13     3e-09      66     219 ..     111     275 ..     108     283 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 6.7e-13
                  EESSHHHHHHHHHHHCCCC.-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBE.GGGHHHH--TTEEEEEEESBETTTTEB--HHHH CS
  Aminotran_5  66 ftsGtteainlvalslars.lkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeld.ldelekllnektklvaithvsnvtGtiqpveei 161
                  +tsG+te++ l++++++++  +     + + +  ha++   +++a+   + ++ +p+d+  +     ++++++ ++t lva ++ s ++G+++pv+ei
   KIR62935.1 111 VTSGGTESLILAVKAARDArPDVAAPRIAVPVTAHAAF---AKAAHYLRVALDPVPVDPVTLRPsAAAVAAAIGPDTVLVACSAPSYAHGVVDPVAEI 205
                  59**************8887554444455555566666...57777999********987654438888***************************** PP

                  HHHHHHTT-EEEEE-TTTTTTS...........---HHHHTESEEEEETTT.TTSSTT-EEEEEEHHHHH CS
  Aminotran_5 162 gklakkkgalvlvDaaqavghi...........pidvkklgvDflafsghK.llgPtGiGvlyvrkelle 219
                  +++a ++g+  +vDa+ +               p+d++  gv  +++  hK  ++P+G++vl  r+ +l 
   KIR62935.1 206 AAVAAEAGVRCHVDACFGGWTLpwlrrlgepvpPFDFAVAGVTSISVDLHKyAYAPKGVSVLLHRTPALR 275
                  ***************9764433111112222226899999998899999**99*********99987765 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   5.5   9.2e-07    0.0041      44     146 ..     112     221 ..     106     224 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9.2e-07
                      ESSHHHHHHHHHHH.....TTTT.TT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTE...EEEEEB-GGGB---HH CS
  DegT_DnrJ_EryC1  44 vssGtaAlhlaLra.....lgvg.pgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitert...kaIlpVhlyGqvadmd 128
                      +s Gt++l la +a      +v  p+  V v+++  +a a+  l++ ++pv+vD  p t+ +++aa++aai + t   +   p  + G v  ++
       KIR62935.1 112 TSGGTESLILAVKAardarPDVAaPRIAVPVTAHAAFAKAAHYLRVALDPVPVD--PVTLRPSAAAVAAAIGPDTvlvACSAPSYAHGVVDPVA 203
                      6789**********8665555555666666666666666666677777777765..78*****************6654445677789999*** PP

                      HHHHHHHHCT-EEEEE-T CS
  DegT_DnrJ_EryC1 129 alkaiaakhglkvieDaA 146
                      ++ a+aa+ g+    Da+
       KIR62935.1 204 EIAAVAAEAGVRCHVDAC 221
                      ***********9999998 PP

>> DsrH  DsrH like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.3e-05      0.28      45      83 ..     359     397 ..     320     400 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.3e-05
                 S..SSEEEEEHHHHHHTT-TTSB-TTSEEE-HHHHHHHHHH CS
        DsrH  45 a..svklyaLkeDleARGlteqlsegvkvidydgfVeltvk 83 
                 +  ++ l++L + l ARG++  + ++++  d+   V ltv+
  KIR62935.1 359 TdpTLDLFVLVDELTARGWH--TQPQLSYADLPASVHLTVT 397
                 345889**************..899*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3611.27
//
Query:       KIR62936.1  [L=193]
Description: NADH-quinone oxidoreductase subunit B [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.7e-23   81.5   0.0    6.3e-23   81.0   0.0    1.2  1  Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit


Domain annotation for each model (and alignments):
>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0   3.5e-27   6.3e-23       4     130 ..      33     141 ..      31     142 .. 0.82

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 3.5e-27
                  HHHHHT-TTTTHHHHHHTEEEEEETTT-S--HHHHHHTHTTTSEEEEEESBE...EEEHHHHHHHHGGGSSEEEEESHHHHH-TGGGSTT-TEE-HHH CS
  Oxidored_q6   4 csisllaleedlldllelielryhetlladskeeeieakekeadvlvveGavtrkpkealellkelaekakaviavGtCAafGGipaaannpsvgeev 101
                  c i++ a++    d+   i+l + ++++  ++         +ad++vv+G+vt k+++a+++l+++++++k+vi++G+C+  GG +  ++++sv+   
   KIR62936.1  33 CAIEFIATSMGRHDF---IRLGV-IPFAHGPR---------QADLMVVSGTVTDKMAPAIKRLYDQMPEPKYVISFGACSNCGGPY--WDSYSVT--- 112
                  666666666666666...44444.44444444.........9********************************************..7744443... PP

                  HHHHC.S-E.EEE-SSS--HHHHHHHHHH CS
  Oxidored_q6 102 gellevvpvdinipGCPphpeailetlla 130
                  +++++ +pvd+++pGCPp+pea+l+++l 
   KIR62936.1 113 KGVDQLIPVDVYVPGCPPRPEALLHGILR 141
                  69**********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1456.32
//
Query:       KIR62937.1  [L=438]
Description: hypothetical protein TK50_18595 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-111  372.9   2.4   2.2e-111  372.7   2.4    1.0  1  DUF2252   Uncharacterized protein conserved in bacteria (DUF2
    4.3e-05   23.6   6.0     0.0012   18.9   0.2    2.8  3  APH       Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.15   11.8   0.0       0.31   10.9   0.0    1.5  1  NAGLU_N   Alpha-N-acetylglucosaminidase (NAGLU) N-terminal do


Domain annotation for each model (and alignments):
>> DUF2252  Uncharacterized protein conserved in bacteria (DUF2252)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.7   2.4  3.6e-115  2.2e-111       2     391 ..      27     428 ..      26     429 .. 0.97

  Alignments for each domain:
  == domain 1  score: 372.7 bits;  conditional E-value: 3.6e-115
     DUF2252   2 vpelvplryarMaaspFaFfRGtaalfaadLaa.......tpetglrvqicGDaHleNFGlfaspegrlvfdiNDFDEalvgpfewDlkRlaaSlvlaa 93 
                 +p++++ ++++MaaspFaF+RG+a+lf+ad ++       ++e+++rv+i+GD+H+eNFG+++++ grlvf++NDFDEa+vgpf+wDl+RlaaS++l +
  KIR62937.1  27 DPAAFRRKFRKMAASPFAFYRGSASLFYADQRGdfaddafLDERTSRVWIHGDLHAENFGTYMNASGRLVFNVNDFDEAYVGPFTWDLRRLAASVALLG 125
                 6899**************************9999999************************************************************** PP

     DUF2252  94 renglsekdakelvraavesYrealrdlaerealdewyeridvelleeatseeakgvvrkalekarkrtreklldklteleegkrrikddppkllrlse 192
                  +++ls+  + +lv+ +++sY ++lr++a+ ++ +            ++t ++a gv+r++l++ar +tr++ll+ +t+++ +++r+++ ++ +++++ 
  KIR62937.1 126 YAKALSDRAIGDLVAGFARSYLTELRAIAAGGDDAIG----------SITLDNADGVLRRVLQQARLNTRVELLAAQTTVD-NYERRFSLGDGVFEIDG 213
                 ********************************87555..........6*********************************.9999999********** PP

     DUF2252 193 aereaieaalesyaetlpadrrelldr.frlkDvarkv.vGvGSvGtrryvvLlegksdd..dpllLqiKeArpsvlerlvsasepesseveheGeRvv 287
                 ++re++ aa+++y  tlp+++ +l+    ++kDv+ +  vG+GS+G+++y++Lleg++++  +++++ +K+A+ ++++r++++++ +s++ +h+G+R++
  KIR62937.1 214 DTREKVCAAFAEYLGTLPESSANLRPVsAHIKDVVLRKgVGIGSAGLPSYNLLLEGHTEAleNDVVIYMKQAQVPAVARHIDDERVRSYF-RHQGHRTA 311
                 *********************99998779********99******************999*********************999998887.9******* PP

     DUF2252 288 egqrllqaasdifLgwteldgrsfyvRqlrdmkgsldlekl.dkdelaeyarllgrvlAraHarsddaa............viagylgrskefdealae 373
                 e+qr+lqa++d++Lg+teldg+ ++v+++++++ +ld++++ +++ela +++ lgr++Ar+H  +dd++            ++a++  + + f + l+e
  KIR62937.1 312 ESQRALQAHADPWLGFTELDGAGQLVAEVSPYAADLDWSDVnEPEELAGVLADLGRAVARMHSVADDESshdlvdysteeaIVAAVDTDPDGFVAGLVE 410
                 *****************************************888**********************9999***************************** PP

     DUF2252 374 favayadqverDyaefvk 391
                 fa+ay  ++++D++ fv+
  KIR62937.1 411 FAHAYGLRAREDHQLFVD 428
                 ****************96 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   1.9e-07    0.0012     141     233 ..      53     149 ..      18     156 .. 0.64
   2 ?   -0.3   0.1      0.13     8e+02      80     117 ..     211     282 ..     171     337 .. 0.53
   3 !    6.0   0.7    0.0016       9.7      67     118 ..     334     383 ..     303     429 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.9e-07
                 TCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC...TTEEEEE-...--TT-EEEECCHHH......HCCH.....HHCSCHCCCHCHHHH CS
         APH 141 lldlleeleeqvlaalaallpgelptvllHgDlhpgNllvd.pddgrvtGvi...DfedaglgpplyDl......avll.....rswtseldpeflaal 224
                 +     ++ + + +a+++++    ++v++HgDlh  N+     + gr+  v+   Df+ a +gp ++Dl      +  +      ++ +++   ++a++
  KIR62937.1  53 FYA--DQRGDFADDAFLDERT---SRVWIHGDLHAENFGTYmNASGRL--VFnvnDFDEAYVGPFTWDLrrlaasV--AllgyaKALSDRAIGDLVAGF 142
                 333..3333337788888888...7************98777455666..55555**************7776431..233443234445555555555 PP

                 HHHHCS-HH CS
         APH 225 lrayeqeag 233
                 +r y+   +
  KIR62937.1 143 ARSYL--TE 149
                 55555..44 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.13
                 EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-........................................S CS
         APH  80 rsllrklsaaqlpellealgeflaalhqvdpaalpla........................................d 117
                  + ++      ++++++a++e+l+ l + +++ +p++                                         
  KIR62937.1 211 IDGDT------REKVCAAFAEYLGTLPESSANLRPVSahikdvvlrkgvgigsaglpsynllleghtealendvviyM 282
                 44444......7788888888888888887777776655555555555555555555555555553333333333332 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0016
                 TTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SH CS
         APH  67 igllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalpladf 118
                   l++++ +y    + ++ + +++l  +l++lg++ a++h+v  a++  +++
  KIR62937.1 334 GQLVAEVSPYAADLDWSDVNEPEELAGVLADLGRAVARMHSV--ADDESSHD 383
                 444666666655555555778999999***************..44444444 PP

>> NAGLU_N  Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.1e-05      0.31       3      60 ..     169     228 ..     167     235 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.1e-05
                 HHHHHHHHH-GGGGGEEEEE.--BTTB-EEEEE..-SSS-EEEEESSHHHHHHHHHHHHH CS
     NAGLU_N   3 vrelleRllpehaskfkfelveeksgkdvFeis..skggkilIrGnsgvalasGlnwYLk 60 
                 ++++l+R+l+++  + ++el  ++ + d +e      +g   I G++  ++++++  YL 
  KIR62937.1 169 ADGVLRRVLQQARLNTRVELLAAQTTVDNYERRfsLGDGVFEIDGDTREKVCAAFAEYLG 228
                 899*****************966888888886631456699*****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3299.61
//
Query:       KIR62938.1  [L=199]
Description: NADH dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-38  130.2   0.0    7.4e-38  129.9   0.0    1.1  1  Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd s


Domain annotation for each model (and alignments):
>> Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.0   4.1e-42   7.4e-38       2     120 ..      35     153 ..      34     155 .. 0.97

  Alignments for each domain:
  == domain 1  score: 129.9 bits;  conditional E-value: 4.1e-42
                     E--HHHHHHHHHHHHH...TT--EEEEEEEEETTSSSEEEEEEEE--S-.-EEEEEE....-S-BEE--TTT-STHHHHHHHHHHHSHHBCTTSS CS
  Complex1_30kDa   2 vvepedllevakflkdeeelgfdvlsdltavDekeerfevvyhllsleknerirvkvevdeeepevpSvtdlfpgadwyEREayDmfGivfeghp 96 
                      v+p+++++++++++d+++lg+d++ +l+avD+  +  evv hl s+ +++ + ++++v+ ++p+v+Sv+dl+pga w+ERE+++mfG+ f gh 
      KIR62938.1  35 DVPPASWRDALRAARDDADLGCDFFDWLSAVDQLADGCEVVAHLWSTGRRHGLLLRTRVPWDAPRVDSVVDLYPGAAWHERETFEMFGVDFPGHG 129
                     799*****************************999************999********************************************* PP

                     TSS-SSSSTTSSS-TTSTTS---- CS
  Complex1_30kDa  97 dlrrillpedfeghPLRkdfplsg 120
                     +lr +llp +feghPLRk+f l++
      KIR62938.1 130 ELRPLLLPPEFEGHPLRKEFVLAS 153
                     ********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1514.23
//
Query:       KIR62939.1  [L=420]
Description: hypothetical protein TK50_18615 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-24   85.6  17.2    8.5e-24   84.3  17.2    1.6  1  Peptidase_S8  Subtilase family
      3e-08   34.2   0.0    4.9e-08   33.5   0.0    1.3  1  Inhibitor_I9  Peptidase inhibitor I9


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3  17.2   9.5e-28   8.5e-24       1     283 [.     173     401 ..     173     414 .. 0.77

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 9.5e-28
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvl 97 
                   g+gv+v v+D+G+  +h+d+                     +++   +   n ++d +g    HGthvAG++++         gva  ++i +v+vl
    KIR62939.1 173 GSGVTVYVVDSGIRATHVDFGGRAS---------------GVYDAVGD--GNGTNDCHG----HGTHVAGTVGGA------TYGVAKAVTIKAVRVL 242
                   79*****************772211...............12333333..333333344....***********9......99************** PP

                   STTSB-HH..HHHHHHHHHHHH..CT-SEEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  98 dtsggsmetgteliraieeaae..dkvdvinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvga 192
                    ++++s  t t+li+++++ a   d v v n sl +   +p+t       a+++++ ++gv  v+ a N +      ++ ++ g  s s+  +tv+a
    KIR62939.1 243 -QCDNSGWT-TDLIEGMDWIAAnhDPVSVANFSLQGYGTTPNT-------AAENLI-DSGVHTVFIANNFN------TDACTNGPRS-SR-GVTVAA 321
                   .56666655.9********888444466999999955555554.......566777.88888999998888......6777766544.44.489*** PP

                   ESTTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS-E CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 193 yttegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAqd 283
                   +++ +  a+fSs+G ++      d+ apG+ni  +++  sn +a +     +sGTSmA+P+++g +A  ++ +p  t ++ ++al+ +A++
    KIR62939.1 322 TDVTDTRASFSSYGTCV------DVFAPGVNIT-SAGIASN-TAVA---SGWSGTSMAAPHVTGWMARYRQQFPTATLAQAKSALIAAATT 401
                   ****************9......6*******33.3333332.3333...459***********************************9964 PP

>> Inhibitor_I9  Peptidase inhibitor I9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   5.5e-12   4.9e-08       1      78 [.      58     130 ..      58     132 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 5.5e-12
                   EEEEEE-TTS-HHHHHHHHHHHHH....HHHHTT..--EEEEEEESSSSSEEEEEE-GGGHHHHHTSTTEEEEEEEEE CS
  Inhibitor_I9   1 vYIVtfkeaakaakkassheswhqsllksvlkgedsakagilysYkilfnGfavklteeqaeklrkrpeVesVepDqs 78 
                   +YIV++ +  + +++a+  ++ +      v++   +a  ++l+ Y  ++ G+a++lt++ + ++r++p V++Ve+D+ 
    KIR62939.1  58 RYIVVLADPPAGTDRATRTARTSR--AAAVAE---RAGGTVLNRYTRVLDGYAAQLTPAALAAVRADPAVAYVERDSR 130
                   699999986555553333333333..334444...459**************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2942.24
//
Query:       KIR62940.1  [L=138]
Description: hypothetical protein TK50_18625 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-24   86.5   0.0    1.7e-24   86.0   0.0    1.2  1  SnoaL     SnoaL-like polyketide cyclase
    1.6e-14   54.3   2.1    3.7e-14   53.2   2.1    1.5  1  SnoaL_2   SnoaL-like domain


Domain annotation for each model (and alignments):
>> SnoaL  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.0   1.9e-28   1.7e-24       2     126 .]       7     127 ..       6     127 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 1.9e-28
                 HHHHHHHHHHHTT-HHHHHGTEEEEEEETCCTTTCECHHHHHHHHHHHHHHHCTTCEEEEEEEEEETTEEEEEEEEEEEESSEBTTBE-TT-EEEEEEE CS
       SnoaL   2 lvlrfyeevwnsgdldaldelvaedvvdhnpeeeparGlegfrafveelfkafPDlkvevedlvaegdkvaarltftGthtgeflGipptGkkvkfeei 100
                  ++rf+++vwn g+ + + elva  +          +G+e++ a  +e ++afPDl+ +  d+va+ d+va+r+++ Gt  g+f+ +pptG+  +f++ 
  KIR62940.1   7 AARRFVADVWNAGREESAYELVAAGCPGL-----GGTGPEAVLAWHRERRAAFPDLRYKLVDVVAAADRVAVRWRAAGTQAGPFGPVPPTGRVASFSGA 100
                 589*********************88666.....789************************************************************** PP

                 EEEEEET.TEEEEEEEEECHHHHHHHC CS
       SnoaL 101 tllrved.GkIveewdviDllgllrQl 126
                 t+lr+   G+Iv++w+   l +ll+Ql
  KIR62940.1 101 TFLRFDPaGRIVDVWHATELFQLLQQL 127
                 ******99******************8 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   2.1   4.1e-18   3.7e-14       2     101 ..       9     113 ..       8     114 .. 0.90

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 4.1e-18
                 HHHHH.HHHTTCHHHHHHTEEEEEEEEET.TSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEETTEEEEEEEEEEE.......EETTSSEEEEEEEEE CS
     SnoaL_2   2 rafla.alnagdldalaalfapdvvwedp.ggelrGreairaffralfaafpdlrfeihdvvadgdrvavewtvtgt.......ipatgrgvtvrgvdv 91 
                 r+f+a ++nag+ + + +l+a+ +    p +   +G+ea+ a+ r+ +aafpdlr+++ dvva  drvav+w++ gt       +p+tgr  ++ g+++
  KIR62940.1   9 RRFVAdVWNAGREESAYELVAAGC----PgL-GGTGPEAVLAWHRERRAAFPDLRYKLVDVVAAADRVAVRWRAAGTqagpfgpVPPTGRVASFSGATF 102
                 788866888888888888888888....422.2689*************************************************************** PP

                 EEE.ETTEEEE CS
     SnoaL_2  92 frv.rdGkive 101
                 +r+   G+iv 
  KIR62940.1 103 LRFdPAGRIVD 113
                 ***558***96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1071.36
//
Query:       KIR62941.1  [L=191]
Description: hypothetical protein TK50_18630 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-23   80.8   0.2    9.5e-23   80.6   0.2    1.1  1  Uma2      Putative restriction endonuclease
  ------ inclusion threshold ------
       0.14   12.6   0.1       0.21   12.0   0.1    1.2  1  HrpB_C    ATP-dependent helicase C-terminal


Domain annotation for each model (and alignments):
>> Uma2  Putative restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.2   1.1e-26   9.5e-23       3     142 ..      19     153 ..      17     183 .. 0.87

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 1.1e-26
                 HHHHHHHSTTEEEEETTS-EEE.EETSHHHHHHHHHHHHHHHHHHHHH-SEEEEETT--EE-TTS-EE--SEEEEEHH.HHTS-HHHHSS-SS--SEEE CS
        Uma2   3 eflqlpeneevryelvdGeliemsplggeheriaalLaallgnwlrerklgrvfaselgvrlpeeserePDvavvrge.weresrriweelpaaPdlvv 100
                 +++ lp +++ r el+dG l++ + +++ h++ia +L  +l++ + +    + +   + vr+ + ++ +PDv v+ +e  +r + r   + p  + l+v
  KIR62941.1  19 DLDGLP-EDGRRRELLDGVLLVSPSPTRIHQTIAMRLGVALEEQCPD---EYDVTQGVEVRINRTRSFVPDVLVTTAEaARRSPSR---YAPHEVVLAV 110
                 566678.9999***********55555**************999888...46666699999999**************55555555...9********* PP

                 EE--TTS-.HHHHHHHHHHHHTT-SEEEEEETTTTEEEEE-TT CS
        Uma2 101 EVlspsts.kdleeKlelYaalgvpeywlvdpkertvevfrle 142
                 EV+spst+  d+  K +lYa++g+p yw ++  + ++ v++  
  KIR62941.1 111 EVVSPSTRsIDRVLKPALYAQAGIPFYWRIETGDGELVVHTHR 153
                 *******************************999999998865 PP

>> HrpB_C  ATP-dependent helicase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.3e-05      0.21      25     100 ..      47     121 ..      40     125 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.3e-05
      HrpB_C  25 kallsweqqqeldelaPerlevpsgsriridYeeeeepvlsvrlqelfglketpkvaegrvpvlleLlsPaqrplq 100
                 ++++ ++   +l+e++P++++v +g ++ri+ +++  p + v   e     +  + a ++v + +e++sP++r++ 
  KIR62941.1  47 HQTIAMRLGVALEEQCPDEYDVTQGVEVRINRTRSFVPDVLVTTAEAARR-SPSRYAPHEVVLAVEVVSPSTRSID 121
                 56677777789********************9888889999999887543.344667789************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1365.18
//
Query:       KIR62942.1  [L=204]
Description: NADH dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-11   43.5  13.4    2.6e-09   36.5   1.6    2.4  2  Fer4      4Fe-4S binding domain
    2.8e-08   34.2   8.8    1.5e-07   31.9   9.6    1.8  2  Fer4_7    4Fe-4S dicluster domain
    4.8e-07   29.8   3.6     0.0011   19.0   0.0    2.2  2  Fer4_10   4Fe-4S dicluster domain
    5.8e-07   29.6   7.6    3.1e-06   27.3   8.5    1.7  2  Fer4_9    4Fe-4S dicluster domain
    8.1e-06   26.7  18.8     0.0006   20.7  11.2    2.1  2  Fer4_16   4Fe-4S double cluster binding domain
    2.1e-05   24.5   8.1      0.037   14.2   2.3    2.2  2  Fer4_21   4Fe-4S dicluster domain
    4.9e-05   23.2   9.7      0.001   19.1   1.0    2.4  2  Fer4_2    4Fe-4S binding domain
    0.00021   21.7  10.2    0.00045   20.6   9.7    1.8  2  Fer4_8    4Fe-4S dicluster domain
    0.00027   20.9  15.8       0.01   15.9   2.1    2.3  2  Fer4_6    4Fe-4S binding domain
    0.00032   21.2  10.5     0.0027   18.2  11.2    2.0  2  Fer4_17   4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.067   13.9  11.6       0.99   10.2   0.6    2.8  2  Fer4_15   4Fe-4S single cluster domain
      0.078   14.0   4.2      0.078   14.0   4.2    2.4  2  Fer4_3    4Fe-4S binding domain
      0.088   13.4  11.9       0.54   10.8   0.4    2.7  3  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I
       0.19   13.3   6.2       0.43   12.2   6.2    1.5  1  DUF3729   Protein of unknown function (DUF3729)
       0.21   12.2  12.0        1.8    9.3   0.8    2.4  2  Fer4_4    4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   4.5   0.00011      0.13       6      19 ..      54      67 ..      50      72 .. 0.92
   2 !   36.5   1.6   2.2e-12   2.6e-09       3      24 .]      99     120 ..      97     120 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
                TTSSS-THHHHHST CS
        Fer4  6 ekCigCGaCvevCP 19
                e C+ C++C+  CP
  KIR62942.1 54 ENCTVCMLCARECP 67
                89************ PP

  == domain 2  score: 36.5 bits;  conditional E-value: 2.2e-12
                 EETTTSSS-THHHHHSTTTEEE CS
        Fer4   3 ideekCigCGaCvevCPvgAIt 24 
                 id ++C++CG+CvevCP++A++
  KIR62942.1  99 IDFSLCMYCGICVEVCPFDALY 120
                 9*******************85 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   4.4   0.00044      0.53      27      49 ..      45      67 ..      26      70 .. 0.78
   2 !   31.9   9.6   1.3e-10   1.5e-07       2      52 .]      56     118 ..      55     118 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00044
      Fer4_7 27 gtekveidpekClgCgaCvavCP 49
                 +  +++ +e+C+ C  C+++CP
  KIR62942.1 45 SRGVIALLAENCTVCMLCARECP 67
                446678889*************9 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 1.3e-10
      Fer4_7   2 CigCgaCvaaCpvkaieldeeenek........gt....ekveidpekClgCgaCvavCPtga 52 
                 C+ C  C++ Cp  +i++d +++e         ++    ++ +id + C++Cg Cv+vCP++a
  KIR62942.1  56 CTVCMLCARECPDWCIYIDSHKEEVavpgaarpRQrnvlDRFDIDFSLCMYCGICVEVCPFDA 118
                 ******************987555544444333113455777******************997 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   1.2   0.00025      0.29       6      23 ..      53      70 ..      48      94 .. 0.69
   2 !   19.0   0.0   9.6e-07    0.0011       4      24 ..      99     130 ..      96     175 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00025
     Fer4_10  6 ddtCirCgkCvkaCPadl 23
                ++ C+ C  C + CP + 
  KIR62942.1 53 AENCTVCMLCARECPDWC 70
                467888888888888744 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 9.6e-07
     Fer4_10   4 idddtCirCgkCvkaCPadl...........t 24 
                 id + C+ Cg Cv++CP+d+            
  KIR62942.1  99 IDFSLCMYCGICVEVCPFDAlywspefeyaeY 130
                 78899************977666665555440 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   4.5   0.00041      0.49      33      48 ..      43      68 ..      23      71 .. 0.68
   2 !   27.3   8.5   2.6e-09   3.1e-06       1      50 [.      55     118 ..      55     119 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00041
      Fer4_9 33 e..........eaCigCgaCveaCpk 48
                           e+C+ C+ C+  Cp 
  KIR62942.1 43 PrsrgviallaENCTVCMLCARECPD 68
                0444556666689***********97 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 2.6e-09
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase..............eaCigCgaCveaCpkga 50 
                 +Ct C  C + Cp + +  d+ ++++++  a                + C+ Cg Cve+Cp +a
  KIR62942.1  55 NCTVCMLCARECPDWCIYIDSHKEEVAVPGAARprqrnvldrfdidfSLCMYCGICVEVCPFDA 118
                 6****************9999999998876666899*************************886 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7  11.2     5e-07    0.0006       1      66 [.      55     116 ..      55     117 .. 0.64
   2 !   17.6   0.8   4.6e-06    0.0055       2      20 ..     104     122 ..     103     145 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 5e-07
     Fer4_16   1 rCgtCgkCaevCPtnaikekkekeiearecisyntaekkdlaedeekckkqeaitgCdiCqdvCPa 66 
                 +C+ C  Ca  CP  +i  +++ke  a    +   + +++   d++  +    +++C+iC++vCP+
  KIR62942.1  55 NCTVCMLCARECPDWCIYIDSHKEEVAVPGAAR--PRQRN-VLDRFDID-FSLCMYCGICVEVCPF 116
                 6***************99884333333333222..22222.23333333.45788**********8 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 4.6e-06
     Fer4_16   2 CgtCgkCaevCPtnaikek 20 
                 C  Cg C+evCP +a+   
  KIR62942.1 104 CMYCGICVEVCPFDALYWS 122
                 8889999999998888755 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   2.3   3.1e-05     0.037      34      57 ..      49      71 ..      41      73 .. 0.84
   2 !   13.7   0.4   4.3e-05     0.051      39      55 ..     102     117 ..      88     120 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.1e-05
     Fer4_21 34 lkvvedeCvGCnlCssvCPvedci 57
                +++++++C+ C lC+  CP + ci
  KIR62942.1 49 IALLAENCTVCMLCARECP-DWCI 71
                56789**************.7888 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 4.3e-05
     Fer4_21  39 deCvGCnlCssvCPved 55 
                 + C+ C +C++vCP  d
  KIR62942.1 102 SLCMYCGICVEVCPF-D 117
                 67999********97.4 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   2.1    0.0018       2.2       3      21 ..      49      67 ..      47      68 .. 0.86
   2 !   19.1   1.0   8.4e-07     0.001       4      21 ..      98     115 ..      95     116 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0018
      Fer4_2  3 vvvdtdrCigCgaCvsaCP 21
                ++  +++C+ C  C   CP
  KIR62942.1 49 IALLAENCTVCMLCARECP 67
                5566899***********9 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 8.4e-07
      Fer4_2   4 vvdtdrCigCgaCvsaCP 21 
                  +d   C+ Cg+Cv +CP
  KIR62942.1  98 DIDFSLCMYCGICVEVCP 115
                 578899************ PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   9.7   3.7e-07   0.00045       2      63 ..      53     116 ..      52     118 .. 0.79
   2 !   12.6   1.2   0.00012      0.14       2      17 ..     101     116 ..     100     173 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.7e-07
      Fer4_8   2 lekCieCgaCqsaCp...vlrrtkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCpv 63 
                 +e+C+ C++C  +Cp   ++ ++ k+    +g a    q++     +  +  C+ cg C+evCp 
  KIR62942.1  53 AENCTVCMLCARECPdwcIYIDSHKEEVAVPGAARP-RQRNVLDRFDIDFSLCMYCGICVEVCPF 116
                 589***********9999888888777777777666.444444334889***************6 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00012
      Fer4_8   2 lekCieCgaCqsaCpv 17 
                 ++ C+ Cg C + Cp+
  KIR62942.1 101 FSLCMYCGICVEVCPF 116
                 5668888888888872 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   6.0   0.00052      0.62       7      20 ..      54      67 ..      53      73 .. 0.92
   2 !   15.9   2.1   8.4e-06      0.01       7      24 .]     102     119 ..      98     119 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00052
      Fer4_6  7 dkCigCgdCvrvCP 20
                ++C+ C+ C+r CP
  KIR62942.1 54 ENCTVCMLCARECP 67
                79************ PP

  == domain 2  score: 15.9 bits;  conditional E-value: 8.4e-06
      Fer4_6   7 dkCigCgdCvrvCPegai 24 
                 ++C  Cg Cv vCP++a+
  KIR62942.1 102 SLCMYCGICVEVCPFDAL 119
                 57777**********996 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   5.3    0.0021       2.5      43      57 ..      53      67 ..      37      70 .. 0.89
   2 !   18.2  11.2   2.3e-06    0.0027       1      58 [.      55     116 ..      55     119 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0021
     Fer4_17 43 aslCieCgeCerkCP 57
                a++C+ C +C+r+CP
  KIR62942.1 53 AENCTVCMLCARECP 67
                799***********9 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 2.3e-06
     Fer4_17   1 rCiqCgyClpeCps...yeaydnepkkllraaklglleeaeke..ekaslCieCgeCerkCPq 58 
                 +C+ C  C++eCp    y++  +e+  +  aa++   +++ ++    +slC+ Cg C+++CP 
  KIR62942.1  55 NCTVCMLCARECPDwciYIDSHKEEVAVPGAARPR-QRNVLDRfdIDFSLCMYCGICVEVCPF 116
                 6************6322333333444555555554.33333332269***************6 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.6   0.00083      0.99       6      33 ..      54      81 ..      51      95 .. 0.78
   2 ?    7.2   4.7    0.0071       8.5       3      33 ..      99     136 ..      97     175 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00083
     Fer4_15  6 daCigcglCvaeapevfeldedglasvl 33
                ++C+ c lC++e+p+     + ++ +v 
  KIR62942.1 54 ENCTVCMLCARECPDWCIYIDSHKEEVA 81
                68************97655556665555 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0071
     Fer4_15   3 vDrdaCigcglCvaea........pevfeldedglasvl 33 
                 +D ++C+ cg Cv+++        p  fe +e+++ ++l
  KIR62942.1  99 IDFSLCMYCGICVEVCpfdalywsP-EFEYAEYDIRDLL 136
                 8999************666666642.3444445555444 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   8.6       8.5     1e+04       1      12 [.      56      67 ..      56      70 .. 0.83
   2 ?   14.0   4.2   6.5e-05     0.078       1      15 []     104     118 ..     104     118 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 8.5
      Fer4_3  1 CtgCgaCvevCP 12
                Ct C++C + CP
  KIR62942.1 56 CTVCMLCARECP 67
                666999999998 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 6.5e-05
      Fer4_3   1 CtgCgaCvevCPvgA 15 
                 C+ Cg CvevCP +A
  KIR62942.1 104 CMYCGICVEVCPFDA 118
                 999*********998 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.2    0.0016       1.9       4      19 ..      54      69 ..      53      91 .. 0.85
   2 ?   10.8   0.4   0.00045      0.54       1      17 [.      99     115 ..      99     134 .. 0.92
   3 ?   -2.4   0.1       6.1   7.3e+03      37      48 ..     159     170 ..     146     174 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0016
     Fer4_13  4 dtCiacgaCvelaPdv 19
                ++C+ c++C+  +Pd 
  KIR62942.1 54 ENCTVCMLCARECPDW 69
                79************95 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00045
     Fer4_13   1 VDrdtCiacgaCvelaP 17 
                 +D + C+ cg+Cve++P
  KIR62942.1  99 IDFSLCMYCGICVEVCP 115
                 67788***********9 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 6.1
     Fer4_13  37 seeekadaeeAa 48 
                 +e  k++a++A 
  KIR62942.1 159 GEPAKEEATAAR 170
                 444444444443 PP

>> DUF3729  Protein of unknown function (DUF3729)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   6.2   0.00036      0.43      45     101 ..     144     200 ..     133     203 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00036
     DUF3729  45 lprpvstppsasdvlvlpppseeaalesdlvpsvakpasppsplapkaparkvpapp 101
                   +++  pp+a d+   p+++e +a+  +++p +++  ++p+ + p+apa ++p+ p
  KIR62942.1 144 EWMATVPPPPAHDRNGEPAKEEATAARKAAAPAGSAARPTPARVRPAAPADGTPTDP 200
                 4455567899******************************************99987 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.5    0.0072       8.7       2      16 ..      54      68 ..      53      75 .. 0.93
   2 ?    9.3   0.8    0.0015       1.8       4      16 ..     104     116 ..      95     120 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0072
      Fer4_4  2 erCigCgsCvaaCPq 16
                e+C+ C+ C + CP+
  KIR62942.1 54 ENCTVCMLCARECPD 68
                89************6 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0015
      Fer4_4   4 CigCgsCvaaCPq 16 
                 C  Cg Cv +CP+
  KIR62942.1 104 CMYCGICVEVCPF 116
                 888*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1450.36
//
Query:       KIR62943.1  [L=183]
Description: NADH-ubiquinone oxidoreductase subunit 6 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-33  114.2   5.7    5.3e-33  113.8   5.7    1.2  1  Oxidored_q3  NADH-ubiquinone/plastoquinone oxidoreductase cha


Domain annotation for each model (and alignments):
>> Oxidored_q3  NADH-ubiquinone/plastoquinone oxidoreductase chain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   5.7     3e-37   5.3e-33       3     144 .]      20     158 ..      18     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 3e-37
                  HHHHH-SBHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHIIIIIHHHHHHHHHHHSSTTS----TTCHHHHHHHHHHHHHHHHHHHTT--...... CS
  Oxidored_q3   3 llvitsknpvysalfLilsfvgvaglfillgaeFlallqilvYvGAilvlflFvimllesaeeeepeslsrslalaalligllllalllllllessss 100
                   lv+t++++v+++l+L++++ ++ag++++l ae++a +q+l+YvGA++vl+lF++ml++    ++    ++++++a + +g++l +  ll+       
   KIR62943.1  20 ALVVTTRHLVRAGLYLVVCLGALAGVYLVLAAELVAWVQVLIYVGAVVVLLLFAVMLTRAPIGASDDLDRPGWPAALIGGGAGLGLAALLVDA---YR 114
                  68*******************************************************955444444444445555544444444444434322...34 PP

                  --------TT-HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHC CS
  Oxidored_q3 101 avdaqvadvsnieaigsllftkyllpfelasllLLvaligaivl 144
                  ++  + + +++ e++g+++f +++lpfe++s+lLL al+ga+vl
   KIR62943.1 115 WTRVDLPAPGTAERLGEQVFRTWVLPFEVLSVLLLSALVGAVVL 158
                  55778999**********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       861  (0.0480228); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 1085.81
//
Query:       KIR62944.1  [L=121]
Description: NADH-ubiquinone oxidoreductase subunit 4L [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-23   80.6   7.1    7.7e-23   80.1   7.1    1.2  1  Oxidored_q2  NADH-ubiquinone/plastoquinone oxidoreductase cha
  ------ inclusion threshold ------
          7    7.1   7.4         13    6.2   7.4    1.5  1  DUF2628      Protein of unknown function (DUF2628)


Domain annotation for each model (and alignments):
>> Oxidored_q2  NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   7.1   8.6e-27   7.7e-23       3     103 ..       7      97 ..       5     101 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 8.6e-27
                  HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHC.............TTSCGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-BC CS
  Oxidored_q2   3 llliallfliGlygvllrrnllkvliglelisnavnlllvlagvftegtlvitnpatefadplpqalvLtaivigaaetavgLallvrlyreygtddv 100
                  ++++allf++G+ygvl rrn++ vl+++el++navnl+lv+a +              +  +++q+++L++iv++aae+ vgLa++++lyr + ++ v
   KIR62944.1   7 YVTAALLFGLGVYGVLRRRNAVLVLMAVELMLNAVNLILVTADATV----------RAALPHAGQVFALFVIVLAAAEIGVGLAIVLQLYRLRASVAV 94 
                  789***************************************9976..........5566789*********************************** PP

                  CG- CS
  Oxidored_q2 101 qel 103
                  +e+
   KIR62944.1  95 DEV 97 
                  986 PP

>> DUF2628  Protein of unknown function (DUF2628)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   7.4    0.0015        13      27      83 ..      10      74 ..       5      95 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0015
     DUF2628 27 wAfffgfiwLlyrklwlkalvllviavavsvvlavl.....gfsdavrll.......lalliaillgle 83
                +A++fg +   + ++  ++lvl+++++ +++v  +l     +    vr++       +al + +l + e
  KIR62944.1 10 AALLFGLGVYGVLRRRNAVLVLMAVELMLNAVNLILvtadaT----VRAAlphagqvFALFVIVLAAAE 74
                79*****************************98888755552....33334443443666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 879.49
//
Query:       KIR62945.1  [L=647]
Description: NADH-quinone oxidoreductase subunit L [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-77  258.6  14.9    1.2e-76  257.8  14.9    1.4  1  Proton_antipo_M  Proton-conducting membrane transporter
    2.1e-09   37.3   0.1    1.1e-08   34.9   0.0    2.3  2  Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), 


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.8  14.9   1.3e-80   1.2e-76       1     277 [.     151     419 ..     151     425 .. 0.97

  Alignments for each domain:
  == domain 1  score: 257.8 bits;  conditional E-value: 1.3e-80
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelskalelglnslelllllllllvgllv 94 
                      a+dL++l +g+E+++l++ylLi+  ++ p + +A++k+fl+t++g++ +Llgi+ll   +g+  + +++      ++  +l+++ llll+g++ 
       KIR62945.1 151 AGDLVMLLVGWEVMGLCSYLLIAHDRRLPGAPAAAMKAFLVTRVGDVGFLLGIALLGVSAGSFRIADVLAH---DHSAGTLTAACLLLLAGVAG 241
                      78***********************************************************9999999999...8999999************* PP

  Proton_antipo_M  95 KsaqvplhlWlpdayveaPtpvsall.AatlvkagvlllirlllllavssneisqlllilaiismllgslvalaqtdiKrllAySsishlGyml 187
                      Ksaq+plh+Wlpda +++Ptpvsal+ Aat+v+agv++++rl++l++  ++++  +l +la++++llg+l+a aq d+Kr+lA+S++s+lGym+
       KIR62945.1 242 KSAQFPLHTWLPDA-MAGPTPVSALIhAATMVAAGVYAVTRLFPLFE-RAPAALAVLGVLASVTLLLGALAATAQDDLKRVLAWSTVSQLGYMT 333
                      **************.********************************.********************************************** PP

  Proton_antipo_M 188 ialavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPptagFlskfliLeaava 277
                       alav    + +aa++hlltha fkallFl+ag+vi++   t  + ++ggL+ +mP+++++ +v+l +laG+Pp+agF+sk+ +L+aa a
       KIR62945.1 334 GALAV---GAPAAALFHLLTHAAFKALLFLAAGAVIHAL-GTPLLSRMGGLRSTMPVTFWCTAVGLGALAGVPPLAGFWSKDGVLAAAEA 419
                      *****...5559***********************9998.99*******************************************98755 PP

>> Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.3e-12   1.1e-08       3      46 ..      74     117 ..      72     139 .. 0.85
   2 ?   -1.6   0.1      0.33     3e+03      18      30 ..     138     150 ..     133     157 .. 0.77

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.3e-12
  Proton_antipo_N   3 tWlsvgglsieigfllDklsalmllvvtfvsllvhlYSigYMad 46 
                      tW++ ggl++++g++lD+  al+++ v  v+l v++YS+gY++ 
       KIR62945.1  74 TWVDLGGLRVTLGVRLDGAAALVAVAVAAVALAVQVYSVGYLRA 117
                      9*****************************************53 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.33
  Proton_antipo_N  18 lDklsalmllvvt 30 
                      ++ ++a mllvv 
       KIR62945.1 138 ISLFTAAMLLVVV 150
                      5667899999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4352.08
//
Query:       KIR62946.1  [L=501]
Description: NADH-quinone oxidoreductase subunit M [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-70  236.6  15.1    5.2e-70  235.9  15.1    1.3  1  Proton_antipo_M  Proton-conducting membrane transporter
  ------ inclusion threshold ------
      0.067   13.3   0.3       0.22   11.7   0.3    1.8  1  Oxidored_q5_N    NADH-ubiquinone oxidoreductase chain 4, amin


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.9  15.1   5.8e-74   5.2e-70       1     286 [.     140     422 ..     140     430 .. 0.94

  Alignments for each domain:
  == domain 1  score: 235.9 bits;  conditional E-value: 5.8e-74
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelskalelglnslelllllllllvgllv 94 
                      a dL+l+++++E+vllp+y +i+ w+   ++ +A+ k++l+tllgs++LL+g+ ++ +++gt ++ +l     +gl+  ++l+++ ll ++++v
       KIR62946.1 140 ALDLVLFFVFFEVVLLPMYAIIAGWGGA-DRRRAAAKFALYTLLGSVLLLVGVYVVVAAAGTADLLALTGG--TGLSRGTQLAAFTLLGLAFAV 230
                      679**********************988.8999999****************************9999998..9******************** PP

  Proton_antipo_M  95 KsaqvplhlWlpdayveaPtpvsallAatlvkagvlllirllllla.vssneisqlllilaiismllgslvalaqtdiKrllAySsishlGyml 187
                      Ks+++plh Wlpda+ +aPt++s++lA++l+k+g ++lir+ + +a   + +++ +l +la++++++gslv+laq ++Krl+AySs++h+G++l
       KIR62946.1 231 KSPLWPLHSWLPDAHTQAPTVGSVILAGVLLKMGTYGLIRVAVGVApEGARWAAPVLGVLAVAAIIVGSLVCLAQGELKRLIAYSSVGHMGFVL 324
                      ******************************************999988899999**************************************** PP

  Proton_antipo_M 188 ialavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPptagFlskfliLeaavavsli 281
                      +++a+ t+ g++aa+i  ++h++++ llF lag++ ++r +t  +++++gL+++ P la +l +++++  GlP++agF++++    aa+  +  
       KIR62946.1 325 LGVATLTATGLQAALIGNVAHGVITGLLFFLAGAI-KDRAHTGALAELSGLRETAPRLAGLLGFAAVASLGLPGLAGFWGEAFAVVAAIGRGGP 417
                      ********************************666.9999*****************************************9887777766665 PP

  Proton_antipo_M 282 llvla 286
                      l  ++
       KIR62946.1 418 LWTTL 422
                      55555 PP

>> Oxidored_q5_N  NADH-ubiquinone oxidoreductase chain 4, amino terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   2.4e-05      0.22      54      77 ..      82     105 ..      75     107 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.4e-05
  Oxidored_q5_N  54 syllglDslSapLilLSlWllpLm 77 
                     + lg+D +S+pL++L++ l+ L+
     KIR62946.1  82 RFHLGVDGISYPLVVLTALLTLLC 105
                    6779****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3309.16
//
Query:       KIR62947.1  [L=497]
Description: NADH-quinone oxidoreductase subunit N [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-45  154.9  12.7    2.6e-45  154.9  12.7    1.8  2  Proton_antipo_M  Proton-conducting membrane transporter


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   1.1      0.19   3.4e+03     108     133 ..      15      40 ..       9      82 .. 0.69
   2 !  154.9  12.7   1.4e-49   2.6e-45       1     292 [.     128     433 ..     128     434 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.19
  Proton_antipo_M 108 ayveaPtpvsallAatlvkagvllli 133
                      ay +a t+v +llA +lv+ +v  ++
       KIR62947.1  15 AYLAAGTAVLVLLADLLVARAVATVA 40 
                      55666666666666555554444333 PP

  == domain 2  score: 154.9 bits;  conditional E-value: 1.4e-49
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelskal...elglnslelllllllllvg 91 
                      a+dL++l ++lE   lply+L+gl++ +  s+eA++ +f+++ ++  + Llg +lly++tg l+++ +   l      l+ + ++++  l+l+g
       KIR62947.1 128 AGDLITLIVALETLTLPLYVLVGLRRGSLASAEAAVTFFVVSVVATTVTLLGAALLYAVTGGLHLDRVGALLagrPDLLDVPLTTAAVALVLLG 221
                      78*****************************************************************9999989999999************** PP

  Proton_antipo_M  92 llvKsaqvplhlWlpdayveaPtpvsallAatlvkagvlllirlllllavssneisqlllilaiismllgslvalaqtdiKrllAySsishlGy 185
                      l++K+a+vp+h W p  y +aP+pv a l +t++k+g+ + +  ++  a  ++    +l+ la+++m +g+lval+q+   rllA+Ss+++ Gy
       KIR62947.1 222 LAFKVAAVPFHAWAPATYDGAPLPVAAYL-STASKLGGVVALLAVVQRALPAEVTGPVLAGLAVLTMSVGNLVALRQRRTVRLLAWSSVAQAGY 314
                      *****************************.******988766555555567999999************************************* PP

  Proton_antipo_M 186 mlialav..........atqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPpt.agFlsk 268
                      +l  l++          a + +++aa+++ +++++++++ F++ +++  +  +  ++++++g a ++P +a++++++l++laGlPp  ag+++k
       KIR62947.1 315 ILAPLGAlalaagrtadARAAAYAAAVAYAVFFVVLELAAFAALVALRPAGADGGSLADLRGAARRRPWVAAAFALALVGLAGLPPGlAGLFAK 408
                      *9755544344452222234567888888888888899999999888888999*******************************9855****** PP

  Proton_antipo_M 269 fliLeaavavslillvla.vvasvl 292
                      +++  a+++ ++ +l+l+  v +v+
       KIR62947.1 409 VTVVRALLDGGAGWLALVvAVNAVI 433
                      ***********99999997777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 3148.10
//
Query:       KIR62948.1  [L=292]
Description: protease HtpX [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-34  118.2   0.0    5.5e-34  117.7   0.0    1.2  1  Peptidase_M48  Peptidase family M48
  ------ inclusion threshold ------
      0.025   13.8   0.0      0.035   13.3   0.0    1.3  1  Peptidase_M56  BlaR1 peptidase M56
       0.11   12.2   6.7          5    6.7   3.2    2.3  2  DUF4010        Domain of unknown function (DUF4010)


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   0.0   9.2e-38   5.5e-34       2     195 ..      66     281 ..      65     282 .. 0.85

  Alignments for each domain:
  == domain 1  score: 117.7 bits;  conditional E-value: 9.2e-38
                    --SSHHHHHHHHHHHHTT-..-EEEEEEE-GGGT-EEEEESSS-E.EEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48   2 lreaelkevveelakeaglpkpltkvyvvnspkrNAFalgggknk.rivltdgLlkqllseeelaaVlGHElGHikhrhsvvslivsllasillll 96 
                    ++++el ++v+ela ea    p++++yv   ++ NAFa+g++  +  + +t+g+  + l+ +el++V+GHEl+H+ +r+ ++s + + la i+ +l
     KIR62948.1  66 AQFPELYRMVRELATEARQ--PMPRLYVSPTSQPNAFATGRNPANaAVCVTQGIT-EILDYRELRGVIGHELSHVYNRDILISSVAAGLAGIITML 158
                    68899**************..********************99988*********.***************************9999999998888 PP

                    HHHHHTT.-SHHHHHTT--S---HHHHHHHHHHTT....HHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHH........... CS
                    xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........... RF
  Peptidase_M48  97 glallis.raeedaagafldalavliglliillfl....alSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrs........... 176
                    + ++ +    ++d+  a       l+++l+ l  +    a+SR+rE+qADe g++l+ ++ +l++al k++ + +  +  a+ +            
     KIR62948.1 159 ANIAWFIpLGGGDDEDAPNPVVLLLTLILGPLAATviqlAISRSREFQADESGARLTRDPLALASALRKIHLGTQARPLPAQGQLtstahlmidnp 254
                    876544313333333333333333333333333325566*************************************99999988899********* PP

                    ........HHS-SS--HHHHHHHHHH- CS
                    ........xxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48 177 ........ellstHPplleRiqalkel 195
                            +l+stHP  +eR+++l+++
     KIR62948.1 255 fkrgggiaALFSTHPRMEERVARLERM 281
                    ************************987 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.8e-06     0.035     180     224 ..     110     154 ..      31     167 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.8e-06
  Peptidase_M56 180 rIvlPadflkklsdeeleyillHElaHlkrkDllvnllvavlqcl 224
                     + + + +++ l+ +el  ++ HEl+H+ ++D+l+  ++a l  +
     KIR62948.1 110 AVCVTQGITEILDYRELRGVIGHELSHVYNRDILISSVAAGLAGI 154
                    567777788889999*******************99877665433 PP

>> DUF4010  Domain of unknown function (DUF4010)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   3.2   0.00084         5     129     164 ..       6      41 ..       3      47 .. 0.92
   2 ?    6.4   0.1    0.0011       6.4      55     130 ..     137     226 ..     128     227 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00084
     DUF4010 129 lkfallfalilllakaaqeyfGdaglyalaalsGla 164
                 lk a+l+ l++ l+ a+  +fG +g +++a++++l+
  KIR62948.1   6 LKTAALLGLLTSLILAVGYWFGGSGGLVVAVVVSLV 41 
                 7899****************************9987 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0011
     DUF4010  55 llaagillAnavmllrvllivavvnpallvala..............lpllalallallvaalllrrrekeeeee.elelenPlelksAlk 130
                 ++   il+++++  l  + i+++ n+a+++ l               l l+++ l+a ++ +++ r+re +++e+ +  ++ Pl l sAl+
  KIR62948.1 137 VYNRDILISSVAAGLAGI-ITMLANIAWFIPLGggddedapnpvvllLTLILGPLAATVIQLAISRSREFQADESgARLTRDPLALASALR 226
                 555555555555555433.33333556666555666666555544435555555555555555555555555555788999*******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1943.17
//
Query:       KIR62949.1  [L=419]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-10   39.8  60.8    1.3e-07   30.9  30.2    2.2  2  MFS_1           Major Facilitator Superfamily
  ------ inclusion threshold ------
        2.1    7.4   4.8        3.2    6.8   2.5    2.1  2  Nuc_sug_transp  Nucleotide-sugar transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9  30.2   1.4e-11   1.3e-07       3     265 ..      21     280 ..      19     289 .. 0.78
   2 !   12.6  34.3   5.2e-06     0.046       2     182 ..     228     408 ..     227     417 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.4e-11
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa.....sslwlllvlrvlq 95 
                 +++++  l+++++ +al  ++ ++ +   s +  + ++yal+ a++s+++Gr++dr+G+ +vll+++++  l+ l +l +a     +s   +++  + +
  KIR62949.1  21 VLGVIGRLGIGMTPLALL-LVVQQVTGRYSLAAVAGGIYALAGAALSPVAGRVADRVGPTPVLLATAVAHPLA-LGGLlWAsrtdgAS---IALIYLAA 114
                 556677778888888887.677777779999999**********************************99999.33333665444444...44444555 PP

       MFS_1  96 Glgagalfpagaaliadwfpke........ergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspke 186
                 G++++++ p+ aal  +w   +         r+ a+g  +a   + ++lgpll ++++  +   a+ + +a+v+l++ v   ++ + +  + +r+ pke
  KIR62949.1 115 GVAGATYPPLTAALRGAWNDLTspatgryhLRNTALGAETALLEVVFVLGPLLVAAFVLIADAAAALVGAAVVTLVGTV---AVALGRVMRGWRPHPKE 210
                 5555555555555555554444455899999**********************************************99...77777888888888888 PP

       MFS_1 187 eekgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallag 265
                        ++l p    l+    + +ll+++++ +++f ++ + +p ++  +   +   lag+lla+ +l++a++++++g
  KIR62949.1 211 H----HARGLGP----LRVGG-FPALLLCIAGLGIAFGAAGVIVPAFAGNQPTDDPESLAGVLLAVWGLGSAAAGFWFG 280
                 8....7778888....33333.32599999999999999*******944443333469999999999999999999988 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.2e-06
       MFS_1   2 llaaflsalarsilgpalplalaed.lgispseigllltlyalgaavaslplGrl..sdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGl 97 
                 ll+++  ++a++++g+++p + +++     +s +g ll++ +lg+a+a + +G+   + ++  r + +l +++ a +++++++ ++  +l v+ v+ G+
  KIR62949.1 228 LLCIAGLGIAFGAAGVIVPAFAGNQpTDDPESLAGVLLAVWGLGSAAAGFWFGVRkpAANM-TRQFAWLLAAVAATFAVYAVM-PGPLALGVALVVGGA 324
                 677888888888899999974444414445566********************99889999.777555555555555478888.88779********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrk 182
                 + + ++++ ++l+ +++p    + a+ ++ + + ++++ g +++gl++ +++g +++f++++ + ++++ +  + lp+ p +r+  
  KIR62949.1 325 AIAPALTLENTLVGRIAPAGMLNEAYTWAVTIMVASSAAGGAVAGLIIdHAGGVPWAFVFAGSAVAVGAAV--AALPAGPIARAEA 408
                 ************************************************77777**************9765..8887777776665 PP

>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1     0.031   2.8e+02     266     308 ..     283     327 ..     261     334 .. 0.83
   2 ?    6.8   2.5   0.00036       3.2     232     285 ..     338     394 ..     316     399 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.031
  Nuc_sug_transp 266 kyaDnilkgfatslaiilstvasvlll..dlkitllFllGallvi 308
                     k a n+ + fa  la + +t+a + ++   l++++  ++G   + 
      KIR62949.1 283 KPAANMTRQFAWLLAAVAATFAVYAVMpgPLALGVALVVGGAAIA 327
                     6688999***************99999877999999999877665 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00036
  Nuc_sug_transp 232 skisekGffk.GydlvvwvvvllqavGGlvvavvvkyaDnilkgf..atslaiilst 285
                      +i+  G+++  y+++v ++v+  a GG v  +++ +a  +  +f  a s   + ++
      KIR62949.1 338 GRIAPAGMLNeAYTWAVTIMVASSAAGGAVAGLIIDHAGGVPWAFvfAGSAVAVGAA 394
                     578889998538*************************99987776114444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 2906.62
//
Query:       KIR62950.1  [L=111]
Description: hypothetical protein TK50_18675 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-45  152.6   8.2    4.2e-45  152.4   8.2    1.0  1  UPF0060        Uncharacterised BCR, YnfA/UPF0060 family
  ------ inclusion threshold ------
      0.013   15.3   8.3      0.037   13.8   8.3    1.7  1  DUF2157        Predicted membrane protein (DUF2157)
      0.086   11.6   0.1      0.098   11.4   0.1    1.1  1  ArgJ           ArgJ family
      0.091   12.7   2.7       0.18   11.7   2.8    1.4  1  7TMR-DISM_7TM  7TM diverse intracellular signalling
       0.97    9.9   7.9          2    8.9   7.9    1.6  1  MerC           MerC mercury resistance protein


Domain annotation for each model (and alignments):
>> UPF0060  Uncharacterised BCR, YnfA/UPF0060 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.4   8.2   1.2e-48   4.2e-45       2     107 .]       4     110 ..       3     110 .. 0.98

  Alignments for each domain:
  == domain 1  score: 152.4 bits;  conditional E-value: 1.2e-48
     UPF0060   2 lksillfllaalaeigGaylvwlwlreaksvllalvaaillavygflatlqp.aafGrvyaayGGvfvvlallwglvvdgvkldlydwiGalialvGvl 99 
                  +sillfllaalaeigGa+lvw++ re++++l+   ++++l++ygf+at+qp a+fGr++aayGGvfv+++l+wg+vvd++++d+yd++Ga+i+lvGv+
  KIR62950.1   4 ARSILLFLLAALAEIGGAWLVWQGWREHRGLLWIAGGVVALGLYGFVATFQPdANFGRILAAYGGVFVAGSLAWGMVVDKFRPDRYDVVGAAICLVGVA 102
                 69************************************************************************************************* PP

     UPF0060 100 vilyaprg 107
                 vi+yapr+
  KIR62950.1 103 VIMYAPRS 110
                 ******95 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   8.3     1e-05     0.037      38     143 ..       9     110 ..       1     111 [] 0.67

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1e-05
     DUF2157  38 llvlGalllglGlilfvAanWqglsrlvkfllllvllllslllgavlwrdrrvpprlgeallllaalllgaaia..lvgqifqlsgdaysllllwalll 134
                 l++l+al+   G  l    +Wqg+ +   +l++++ +++  l g+v+    +  + +g++l+  +++ + +++a  +v + f    ++  +++++ +++
  KIR62950.1   9 LFLLAALAEIGGAWL----VWQGWREHRGLLWIAGGVVALGLYGFVATF--QPDANFGRILAAYGGVFVAGSLAwgMVVDKFRPDRYDVVGAAICLVGV 101
                 222222222222222....256666666666666666666666666655..77888999988888888887764459********************** PP

     DUF2157 135 llmayllrs 143
                  +++y+ rs
  KIR62950.1 102 AVIMYAPRS 110
                 *****9876 PP

>> ArgJ  ArgJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   2.7e-05     0.098     284     313 ..      51      91 ..      42     106 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.7e-05
                 HHHTT---HHHHHHHHHHSSS-...........--TTS-EE CS
        ArgJ 284 AlfGeDanwGRilaavGyagae...........ldpekvsv 313
                 A f  Dan+GRilaa G + ++           ++p++ +v
  KIR62950.1  51 ATFQPDANFGRILAAYGGVFVAgslawgmvvdkFRPDRYDV 91 
                 78899************986554555565555666666666 PP

>> 7TMR-DISM_7TM  7TM diverse intracellular signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.8   5.1e-05      0.18      98     170 ..      32     105 ..       7     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.1e-05
  7TMR-DISM_7TM  98 klllllavllsllllllpllpyteslslaqllallvillllligikaw.rkgnkparyfliawlllligvlidi 170
                    + ll++a  +++l l  ++  ++   ++  +la+ + ++++ ++ + + + +++p ry +++ +++l+gv + +
     KIR62950.1  32 RGLLWIAGGVVALGLYGFVATFQPDANFGRILAAYGGVFVAGSLAWGMvVDKFRPDRYDVVGAAICLVGVAVIM 105
                    6677777777777777777788888889989999999888888888889********************99855 PP

>> MerC  MerC mercury resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   7.9   0.00055         2      21     110 ..      11      77 ..       2     108 .. 0.43

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00055
        MerC  21 llallpllglsflasellhqvllilvvaigllalvvgyrrhrktsvlvlgalGllillvalflg.......teaeetllfgslwqvltvlGaalLai 110
                 lla+l+ +g                    g + ++ g+r+hr  + ++ g+++l ++ + + ++                  l+++  v+ a  La+
  KIR62950.1  11 LLAALAEIG--------------------GAWLVWQGWREHRGLLWIAGGVVALGLYGFVATFQpdanfgrI----------LAAYGGVFVAGSLAW 77 
                 333333333....................4445555666666655555555555555444444422111110..........122222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 840.54
//
Query:       KIR62951.1  [L=164]
Description: hypothetical protein TK50_18680 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-63  211.8   1.7    6.6e-63  211.6   1.7    1.0  1  DUF520        Protein of unknown function (DUF520)
  ------ inclusion threshold ------
      0.012   14.5   0.1      0.013   14.4   0.1    1.1  1  Med12-LCEWAV  Eukaryotic Mediator 12 subunit domain
      0.015   15.1   2.1       0.69    9.8   0.1    2.6  3  Flg_hook      Flagellar hook-length control protein FliK


Domain annotation for each model (and alignments):
>> DUF520  Protein of unknown function (DUF520)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.6   1.7   1.1e-66   6.6e-63       1     161 []       5     164 .]       5     164 .] 0.98

  Alignments for each domain:
  == domain 1  score: 211.6 bits;  conditional E-value: 1.1e-66
      DUF520   1 psfDivsevdlqevknAvdqakkeistRfDfkgskaeielkekekeitltaesefklkqvkdilksklvkrgvdlkaldlgkvekasgkkvkqevklke 99 
                 psfDivs+vd+qev+nA+ qa+ke+stRfDf+g+ ae++++  e++i l+ae+e+++++ +d+lk+klvkr+++lk+ld+g+ ++ sgk +k ++k+ +
  KIR62951.1   5 PSFDIVSKVDRQEVDNALRQAEKELSTRFDFRGTGAEVSWSG-EEAISLQAETEERVRAALDVLKEKLVKRNISLKSLDAGE-PRPSGKIFKIDAKVVQ 101
                 7***************************************88.78************************************9.999************* PP

      DUF520 100 gidkekakkivklikdskl.kvqasiqgdevRvtgkkrDdLQaviallkkedldlplqftNfr 161
                 gid++kak i+k+i+d++   vqa+iqgd++Rvtgkk+D+LQaviallk+ed++++lqftN+r
  KIR62951.1 102 GIDSDKAKAISKKIRDEGPkGVQAQIQGDQLRVTGKKKDELQAVIALLKSEDFGIALQFTNYR 164
                 ******************967*****************************************9 PP

>> Med12-LCEWAV  Eukaryotic Mediator 12 subunit domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   2.1e-06     0.013     134     201 ..      13      83 ..       6     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.1e-06
  Med12-LCEWAV 134 ksnqevrkqlkeaEeeike....RsraaEvrWsldkwqestagvtinrvLatLdaLDrhsFervdsnnsldt 201
                    + qev + l++aE+e+ +    R+  aEv Ws +    s ++ t +rv a+Ld+L ++  +r  s  sld+
    KIR62951.1  13 VDRQEVDNALRQAEKELSTrfdfRGTGAEVSWSGEEAI-SLQAETEERVRAALDVLKEKLVKRNISLKSLDA 83 
                   46789999999999998763333699*********998.889999**************9999999999986 PP

>> Flg_hook  Flagellar hook-length control protein FliK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.004        24      40      65 ..       9      34 ..       1      50 [. 0.83
   2 ?    9.8   0.1   0.00012      0.69      46      79 ..      53      86 ..      40      91 .. 0.88
   3 ?   -3.0   0.1       1.1   6.8e+03      29      40 ..     123     134 ..     122     135 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.004
                EEEEE-SCHHHHHHHHTHHHHHHHHH CS
    Flg_hook 40 vqltaenpetrelLeqnlprLreaLa 65
                +   ++++e+ ++L+q+  +L +++ 
  KIR62951.1  9 IVSKVDRQEVDNALRQAEKELSTRFD 34
                566799***************99876 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00012
                SCHHHHHHHHTHHHHHHHHHCCTTCCEEEEEECS CS
    Flg_hook 46 npetrelLeqnlprLreaLaaaGlklddlsvseg 79
                ++et e+++++l+ L+e L + +++l++l+  e 
  KIR62951.1 53 QAETEERVRAALDVLKEKLVKRNISLKSLDAGEP 86
                57899**********************9987765 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.1
                 EEEEEETTEEEE CS
    Flg_hook  29 vkltlrggqlsv 40 
                 v+ +++g+ql+v
  KIR62951.1 123 VQAQIQGDQLRV 134
                 567788888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       957  (0.0533772); expected 358.6 (0.02)
Passed bias filter:                      653  (0.0364214); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1113.63
//
Query:       KIR62952.1  [L=78]
Description: hypothetical protein TK50_18695 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 627.00
//
Query:       KIR62953.1  [L=138]
Description: hypothetical protein TK50_18700 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 937.67
//
Query:       KIR62954.1  [L=184]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.013   15.9   0.0      0.019   15.4   0.0    1.4  1  Acetyltransf_7  Acetyltransferase (GNAT) domain
      0.066   13.4   0.0      0.099   12.9   0.0    1.3  1  Acetyltransf_1  Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   2.1e-06     0.019      25      75 ..      96     153 ..      47     154 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.1e-06
                     TCTEEEEE-GGGTTSSHHHHHHHH...TT..SEEE.EE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  25 aeitrlaVdpeyrgkGiGraLlea...ae..kgii.le.qlelnaekaikfYeklGFe 75 
                      +  ++ +  ++ g G+G +Ll+    ++   g++ l   ++++++  +++Y++ GF+
      KIR62954.1  96 LYAAKMMIPLAHSGAGLGGELLDWaggRAydAGLTwLRlDAWTTNHGLHDYYRRQGFR 153
                     34444777789************735422455543323334444334455*******8 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.1e-05     0.099      31     117 .]      47     152 ..      15     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.1e-05
                     TTCEEEEEEETTEEEEEEEEEEEET...................TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEH CS
  Acetyltransf_1  31 eaegllvaeedgeliGfisllkipd...................ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveednd 106
                      a+ ++++ e++ +i++i+l+ + d                      +  y   +++  ++ g GlG +Ll+ +  ra + g++ + l+   +n+
      KIR62954.1  47 SAGQTWLVWEGDDPIATITLTAYVDvdglwkpdrdpealwypedDPADALYAAKMMIPLAHSGAGLGGELLDWAGGRAYDAGLTWLRLDAWTTNH 141
                     456778888889999999666666666666665566666666565566777779999999***********************9889999999** PP

                     HHHHHHHHTTE CS
  Acetyltransf_1 107 aairlYeklGF 117
                     + + +Y++ GF
      KIR62954.1 142 GLHDYYRRQGF 152
                     ******88**9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1217.04
//
Query:       KIR62955.1  [L=263]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-20   72.4   0.3    6.3e-20   70.6   0.3    2.0  2  GntR      Bacterial regulatory proteins, gntR family
    1.8e-18   66.7   0.3    2.4e-18   66.3   0.3    1.2  1  UTRA      UTRA domain
    7.2e-05   23.1   0.1    0.00022   21.5   0.1    1.8  2  Rrf2      Transcriptional regulator
     0.0037   16.9   0.0     0.0073   16.0   0.0    1.5  1  HTH_41    Helix-turn-helix domain
  ------ inclusion threshold ------
       0.01   15.7   0.2        1.2    9.0   0.0    2.6  2  MarR_2    MarR family
      0.039   13.8   0.1       0.12   12.2   0.1    1.8  1  HTH_IclR  IclR helix-turn-helix domain
      0.044   13.7   0.0      0.088   12.8   0.0    1.5  1  HTH_36    Helix-turn-helix domain
      0.059   13.3   0.0       0.12   12.3   0.0    1.4  1  TrmB      Sugar-specific transcriptional regulator TrmB
       0.15   12.0   0.0        1.3    9.0   0.0    2.2  2  HTH_11    HTH domain


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.3   3.1e-23   6.3e-20       1      61 [.       5      65 ..       5      67 .. 0.98
   2 ?   -2.6   0.0       2.3   4.6e+03      29      41 ..     121     133 ..     120     134 .. 0.81

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 3.1e-23
                HHHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCE CS
        GntR  1 lyeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrG 61
                +y+q++ +Lr +I+sg+lr Gd+LP+e +L++++gVsr+tvR A   L+ eglv+r +grG
  KIR62955.1  5 KYRQIASELRGQIVSGTLREGDRLPTEPQLQDQYGVSRNTVRDATALLVNEGLVQRVPGRG 65
                599*********************************************************9 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.3
                 HHHHHHTS-HHHH CS
        GntR  29 eLaaefgVsrttv 41 
                 eLa++++V   +v
  KIR62955.1 121 ELAERLHVEPDSV 133
                 8999999987665 PP

>> UTRA  UTRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.3   1.2e-21   2.4e-18      14     139 ..     114     240 ..     102     242 .. 0.89

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 1.2e-21
                 EEEE--HHHHHHHTS-TTSEEEEEEEEEEETTEEEEEEEEEEEGGGTTTCH....HHHHHCS-HHHHHHHHHTTSEEEEEEEEEEEE--HHHHHHHTST CS
        UTRA  14 eevpasaeiaeaLglpagepvlrieRlrladgepvaleesylpaslvpdll....eedleegslyayleerlgvpitraeetiearladaeeaelLgis 108
                 + +  s+e+ae+L++++++  +  +++r+++++p +l ++y+p +l++++      +d+  ++++++l+er +++ ++ +e ++ r++++eea+lLg++
  KIR62955.1 114 TIRSLSPELAERLHVEPDSVAVLRRCVRYVNDQPSSLQDTYYPMDLAEEIRellsPKDI-PQGTTRLLAERGHQQTAYYDEYVS-RMPTPEEANLLGLQ 210
                 4667799*****************************************99988888888.899999999977777777777776.************** PP

                 TT-EEEEEEEEEEETTSCEEEEEEEEEETTT CS
        UTRA 109 agspvLviervtydadgrpveysrsyyrgdr 139
                 +g+ +L+  r+ y++ +rpv +s +++ gdr
  KIR62955.1 211 PGTTILLHIRTGYTE-QRPVRVSFNVFAGDR 240
                 ***************.**************8 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   1.1e-07   0.00022      22      69 ..      25      72 ..      19      76 .. 0.87
   2 ?   -3.3   0.0       5.9   1.2e+04      29      41 ..     120     132 ..     117     136 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.1e-07
                TCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESS CS
        Rrf2 22 eeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLak 69
                +++  +  ++ +++++s++ ++  +a L ++glv+ v G+gGG+   +
  KIR62955.1 25 GDRLPTEPQLQDQYGVSRNTVRDATALLVNEGLVQRVPGRGGGMIVRR 72
                555566678999*******************************98766 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.9
                 HHHHHHHTS-HHH CS
        Rrf2  29 eeiaerqnispsy 41 
                  e+aer  ++p  
  KIR62955.1 120 PELAERLHVEPDS 132
                 6899999988865 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.7e-06    0.0073       1      37 [.      23      59 ..      23      66 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.7e-06
      HTH_41  1 kvGdRlktIeelakeleLSvGlvQkALklLeddkais 37
                ++GdRl+t ++l  ++++S+ +v  A  lL++++ ++
  KIR62955.1 23 REGDRLPTEPQLQDQYGVSRNTVRDATALLVNEGLVQ 59
                68********************************997 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00062       1.2      25      57 ..      32      64 ..      20      67 .. 0.83
   2 ?    3.9   0.0     0.025        49      26      38 ..     121     133 ..     115     139 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00062
                HHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESS CS
      MarR_2 25 gelarrlglsksavsrilkrLvaaGLverrpgp 57
                 +l +  g+s+ +v  + + Lv  GLv+r+pg 
  KIR62955.1 32 PQLQDQYGVSRNTVRDATALLVNEGLVQRVPGR 64
                56777889**********************985 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.025
                 HHHHHHTSSHHHH CS
      MarR_2  26 elarrlglsksav 38 
                 ela+rl++++ +v
  KIR62955.1 121 ELAERLHVEPDSV 133
                 9*********998 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   5.8e-05      0.12      22      52 .]      32      62 ..      21      62 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.8e-05
                HHHHHHHTS-HHHHHHHHHHHHHTTSEE... CS
    HTH_IclR 22 selArrtglpkStvhRlLqtLvelGyveqdg 52
                 +l ++ g+++ tv+  ++ Lv++G+v++ +
  KIR62955.1 32 PQLQDQYGVSRNTVRDATALLVNEGLVQRVP 62
                6899***********************9975 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.4e-05     0.088      30      54 ..      33      57 ..      24      58 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.4e-05
      HTH_36 30 tlakrlglsknTvsraikeLeqlGy 54
                 l+ ++g+s+nTv+ a ++L+  G+
  KIR62955.1 33 QLQDQYGVSRNTVRDATALLVNEGL 57
                6899****************99887 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     6e-05      0.12      28      58 ..      34      64 ..      30      83 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6e-05
                HCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 28 iaeelgvprskvYevLrsLedkGlVerekgr 58
                +  + gv+r++v ++   L++ GlV+r++gr
  KIR62955.1 34 LQDQYGVSRNTVRDATALLVNEGLVQRVPGR 64
                67789***********************998 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00066       1.3      20      53 ..      33      65 ..      23      67 .. 0.85
   2 ?   -0.1   0.0      0.47   9.4e+02      20      27 ..     121     128 ..     119     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00066
      HTH_11 20 eLAeeLnvSrrtvrrdIkaLeelgvpIesepgrG 53
                +L ++ +vSr tvr   + L   g  ++ +pgrG
  KIR62955.1 33 QLQDQYGVSRNTVRDATALLVNEG-LVQRVPGRG 65
                799***********9999997777.677777664 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.47
      HTH_11  20 eLAeeLnv 27 
                 eLAe+L+v
  KIR62955.1 121 ELAERLHV 128
                 9*****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1997.91
//
Query:       KIR62956.1  [L=396]
Description: hypothetical protein TK50_18720 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-13   51.1   0.4    1.2e-13   51.1   0.4    4.8  4  HTH_31    Helix-turn-helix domain
    3.2e-07   30.3   0.0    9.7e-07   28.8   0.0    1.9  1  HTH_3     Helix-turn-helix
    8.5e-06   25.7   0.0    2.1e-05   24.5   0.0    1.7  2  HTH_19    Helix-turn-helix domain
     0.0093   16.4   0.0      0.045   14.2   0.0    2.2  2  HTH_26    Cro/C1-type HTH DNA-binding domain
  ------ inclusion threshold ------
        4.5    7.5   7.1         12    6.1   0.0    4.0  5  TPR_7     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.4   3.4e-17   1.2e-13       2      58 ..       9      65 ..       8      69 .. 0.96
   2 ?   -1.0   0.2      0.63   2.3e+03      43      60 ..     126     143 ..     118     150 .. 0.76
   3 ?   -1.3   1.6       0.8   2.9e+03       7      25 ..     200     218 ..     196     223 .. 0.67
   4 ?   -1.2   5.1      0.76   2.7e+03      12      24 ..     376     388 ..     320     395 .. 0.73

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 3.4e-17
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldp 58
                +G++ ++lR+r+G+sq+  A+r+g s+s++ ++E+G r++ +++v+e +a alg++p
  KIR62956.1  9 IGRRMAELRARRGMSQQVFADRIGKSKSWVDKVERGVRTLDRLSVIETVAAALGVTP 65
                79*****************************************************98 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.63
      HTH_31  43 spavlealaralgldpae 60 
                   +vl+al ++l ++++ 
  KIR62956.1 126 HAQVLRALPDLLAATRHT 143
                 567888888888888764 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.8
      HTH_31   7 ralReraGLsqeevAerlg 25 
                 +alR+ ++ +++++A+++ 
  KIR62956.1 200 QALRALHRGRLAQAAALSA 218
                 5667767777777777665 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.76
      HTH_31  12 raGLsqeevAerl 24 
                 r GL+ ++vA+++
  KIR62956.1 376 RTGLTAADVARLA 388
                 3377777777765 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.7e-10   9.7e-07       2      54 ..      14      67 ..      13      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.7e-10
                HHHHHHTTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHHH CS
       HTH_3  2 kelRkqlglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvslde 54
                +elR  +g+sq+ +A+++G s+s + + E+G ++  +l++++ +a aLgv+++ 
  KIR62956.1 14 AELRARRGMSQQVFADRIGKSKSWVDKVERGvRTLDRLSVIETVAAALGVTPTI 67
                699****************************877778**************986 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   5.7e-09   2.1e-05       1      63 [.      10      72 ..      10      74 .. 0.95
   2 ?   -3.0   0.0       2.2   7.7e+03      12      51 ..     378     390 ..     367     395 .. 0.58

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 5.7e-09
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aelllkiaealgidleyllqge 63
                G+r  e+R  +g++q+  a+r+g s+s   + E g + +++  +++  +a alg++++ ll+g+
  KIR62956.1 10 GRRMAELRARRGMSQQVFADRIGKSKSWVDKVERGVR-TLDrLSVIETVAAALGVTPTILLTGK 72
                89*********************************99.99988999***************986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.2
      HTH_19  12 gltqeelaerlgisrskisaiEngkkdvpsaelllkiaea 51 
                 glt +++a+                           +a +
  KIR62956.1 378 GLTAADVAR---------------------------LAAT 390
                 555555555...........................4444 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.2e-05     0.045       2      59 ..      13      70 ..      12      73 .. 0.88
   2 ?   -3.6   0.0       4.5   1.6e+04      20      30 ..     377     387 ..     376     389 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
      HTH_26  2 LrelmadrgitkseLargtgisaatlsrlvkgkperv.sldtLdkiCdaLgctpgDLle 59
                + el a rg++++ +a ++g s++ +++   g ++++ +l++++++++aLg+tp  Ll+
  KIR62956.1 13 MAELRARRGMSQQVFADRIGKSKSWVDKVERG-VRTLdRLSVIETVAAALGVTPTILLT 70
                67899***************************.5666267**************87765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.5
      HTH_26  20 tgisaatlsrl 30 
                 tg++aa ++rl
  KIR62956.1 377 TGLTAADVARL 387
                 78888888887 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.2   4.5e+03      14      28 ..      80      94 ..      76      99 .. 0.75
   2 ?   -2.3   0.2       1.7   6.1e+03       5      19 ..     198     214 ..     196     216 .. 0.66
   3 ?   -3.4   0.2       3.8   1.4e+04      18      33 ..     247     260 ..     246     263 .. 0.64
   4 ?    6.1   0.0    0.0035        12       5      24 ..     290     311 ..     287     317 .. 0.77
   5 ?    2.7   0.0     0.045   1.6e+02       5      18 ..     333     346 ..     330     352 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.2
       TPR_7 14 dyeeAielyeqsLal 28
                d++ A+e  +++La 
  KIR62956.1 80 DTDAAVERVRAALAR 94
                889999999996654 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
       TPR_7   5 Larlysr..lGdyeeAi 19 
                 La++ ++  +G+ ++A+
  KIR62956.1 198 LAQALRAlhRGRLAQAA 214
                 77777776677777776 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.8
       TPR_7  18 AielyeqsLaltkdpe 33 
                 A+++  +  a++ d +
  KIR62956.1 247 AASYRDA--ATAHDLT 260
                 6777777..7766665 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0035
       TPR_7   5 Larlysr..lGdyeeAielyeq 24 
                 Lar+ ++  lGd+ +A+++++ 
  KIR62956.1 290 LARALVAtqLGDHHQAVTIHRY 311
                 555555555**********986 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.045
       TPR_7   5 LarlysrlGdyeeA 18 
                 +ar++ +lGd + A
  KIR62956.1 333 IARAHLDLGDPRAA 346
                 8*********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2911.33
//
Query:       KIR62957.1  [L=846]
Description: diguanylate cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-71  240.9   0.0      4e-71  239.3   0.0    1.8  2  EAL       EAL domain
    1.2e-31  109.7   0.1    3.3e-31  108.2   0.0    1.8  2  GGDEF     Diguanylate cyclase, GGDEF domain
    1.1e-10   42.3   0.4    3.7e-10   40.5   0.4    2.0  1  GAF       GAF domain
      9e-08   32.5   3.5    9.3e-08   32.5   0.7    2.4  2  GAF_2     GAF domain
    0.00017   22.0   1.2     0.0004   20.7   0.3    2.2  2  GAF_3     GAF domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.67   2.4e+03      57      94 ..      88     124 ..      77     133 .. 0.74
   2 !  239.3   0.0   1.1e-74     4e-71       3     238 .]     582     815 ..     580     815 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.67
                 CTCHHHHHHHHHHHHHHHHHHHH.CHTT--EEEEEE--C CS
         EAL  57 lgllaeldrwvleqalqdlrrla.eqldadiklsinlsp 94 
                 l +l+ l++ ++    + +++l+ +   ++ k+++n+  
  KIR62957.1  88 LYYLPPLTLVLVATLAALIAQLRrR--LGPAKFAFNVAR 124
                 5677888888888888899999744..677788888754 PP

  == domain 2  score: 239.3 bits;  conditional E-value: 1.1e-74
                 HHHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHH.CHTT--EEEEEE--CHHCC-C CS
         EAL   3 alrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrla.eqldadiklsinlspaslade 100
                 +lr+al+++ l++y+QP v l+++++vg+e+l+rw+hp +g ++pe+f+++ae++g l +l++ vl++ l++ r++a    ++++ +++nls+++l+d+
  KIR62957.1 582 DLRKALDDGALEVYFQPKVTLRDRRLVGVECLARWEHPAHGEVAPEDFVAVAEHTGQLGRLTEVVLREGLRRSRDWAhA--EQPLAVAVNLSARTLTDR 678
                 79**************************************************************************833..778888************ PP

                 CHHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHH CS
         EAL 101 efleelrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalia 199
                 +f++++rell+++ ++p+rL++ei+e+ +l+ ++      l+rLr+lG+r+++ddfgtg ssl+yl+rlp+  +K+drs+++++ +d+ + a+v+a+++
  KIR62957.1 679 HFPDRVRELLAEYDVPPQRLTFEIREAGVLDGTDRPI-PTLRRLRDLGVRLSVDDFGTGSSSLAYLRRLPVHEVKVDRSFVQGMATDPGDLAIVNAVVT 776
                 **********99***************8876666665.************************************************************* PP

                 HHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 200 lakelgikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 l++++g+ vvaegVe+e +le+l+++gc+ +QG+l+s+p
  KIR62957.1 777 LSQQFGLAVVAEGVESELTLELLQDIGCEIGQGFLFSRP 815
                 **************************************9 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.7     6e+03      74      92 ..     325     343 ..     315     351 .. 0.67
   2 !  108.2   0.0   9.3e-35   3.3e-31       1     156 [.     407     557 ..     407     561 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.7
                 SEEEEESSSEEEEEEECSS CS
       GGDEF  74 dlvaRlggdeFaillpets 92 
                  l aRlggd+  + + ++ 
  KIR62957.1 325 ALGARLGGDRVQLAMLRAA 343
                 4668****99877665554 PP

  == domain 2  score: 108.2 bits;  conditional E-value: 9.3e-35
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 a+hD+lT+LpNRr +   l+++++  +  ++ +avll d+d + ++n+++Gh++GD+vL eva rL++s+ +s lv+R ggdeF++ l   + e   ++
  KIR62957.1 407 AYHDTLTKLPNRRRISAALDEAVSIRAP-GEVVAVLLFDVDGLRQVNESLGHAAGDQVLAEVAVRLRDSAPSSALVGRAGGDEFLVTLRLENAE---AA 501
                 79**********************9976.9*********************************************************9988865...66 PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHH CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKk 156
                  e++ rl ++++ ++  ++ +l+v + +G+a+  p++g+d+++ll+++d a ++aK+
  KIR62957.1 502 LELAARLREEIRAEMVFDAFTLDVDTAVGVAVH-PDHGSDAATLLQRVDLAATAAKS 557
                 66666666666777777888999**********.6********************96 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.4     1e-13   3.7e-10       8     133 .]     265     394 ..     261     394 .. 0.76

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 1e-13
                 HHHHHHHHHHTESEEEEEEEEETTEEECEEEEECC......EEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEETTE CS
         GAF   8 tvveelrellgadrvalylpdydGlhydipqasrw......lfmkngrgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPlvndge 100
                  ++ ++r l++a++++l+lp ++G h ++   +r        f k + ++  qv++++q++ +  ++  ++  q   +  l++  ++ ++vvPl++++ 
  KIR62957.1 265 ALLGRVRALMQAEYATLWLP-AQGRHPEVLLTARIdgrgllDFSKIPASVREQVVQQRQTVALG-ARLGGDRVQ---LAMLRAASTKDAIVVPLRSGEA 358
                 577799*************5.9995552333333333444533333333223***********9.443333344...6799****************** PP

                 EEEEEEEEE.SSS..CSHHHHHHHHHHHHHHHHHHH CS
         GAF 101 lwGllvlhn.psp..pftreelellqvladqvaval 133
                 ++G+l ++n  s+  +ft++++ +++++a+++aval
  KIR62957.1 359 VIGTLEVVNrLSDvgHFTPSDVPVIETVAAHAAVAL 394
                 *********755589*******************97 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.7   2.6e-11   9.3e-08      10     138 .]     265     395 ..     261     395 .. 0.76
   2 ?   -1.3   0.1       0.7   2.5e+03      10      61 ..     423     483 ..     421     486 .. 0.51

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 2.6e-11
                 HHHHHHHHS.S..EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-.GGG-S-HHHHHHHHHTT--EEEEEE-TTS---E CS
       GAF_2  10 lvldelvel.gaalgyillvdddgglrlaawgeaeeefgaaldrplgeglvgealrtgrpvilnd.leedpdkkglpaghaglrsflavPlisegrvvG 106
                 ++l +++ l +a+++ ++l+ ++++ +++  ++ +++    ++ ++ +++ ++++++++ v l   l  d+ + +  +++a  +  ++vPl+s++ v+G
  KIR62957.1 265 ALLGRVRALmQAEYATLWLPAQGRHPEVLLTARIDGRGLLDFS-KIPASVREQVVQQRQTVALGArLGGDRVQLAM-LRAASTKDAIVVPLRSGEAVIG 361
                 6677888875899999999776666444444444444444442.44667899***********9977776666555.599999999*******999*** PP

                 EEEE..S......--HHHHHHHHHHHHHHHHHHH CS
       GAF_2 107 vlnl..yankppafdeedlelLeelaeqiaiaie 138
                  l++    ++ + f+++d+ ++e++a+++a+a+e
  KIR62957.1 362 TLEVvnRLSDVGHFTPSDVPVIETVAAHAAVALE 395
                 ***9554556666*******************97 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.7
                 HHHHHHHHSS....EEEEEEE-TTS-EEEE.......EEEES-TTSTT-S-B.---TTHHHH CS
       GAF_2  10 lvldelvelgaa..lgyillvdddgglrla.......awgeaeeefgaaldr.plgeglvge 61 
                 ++lde+v + a   ++ +ll d dg lr +       a  +  +e+  +l++ +++++lvg+
  KIR62957.1 423 AALDEAVSIRAPgeVVAVLLFDVDG-LRQVneslghaAGDQVLAEVAVRLRDsAPSSALVGR 483
                 6788888884333355555555444.332235455445555555555555553334446666 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.3   1.1e-07    0.0004      10     129 .]     267     396 ..     262     396 .. 0.66
   2 ?   -3.5   0.0       3.5   1.2e+04      86     107 ..     429     450 ..     428     463 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.1e-07
       GAF_3  10 lkllvkllgaevgalll.ldedgnklqvaagwdgkpalsesldedsalarralssgevvse.......psfaeedglpdraalavPLvagrqviGvlal 100
                 l ++  l++ae++ l+l  +++ +++  +a +dg   l +s   +s   + +++++ v+ +        + a+  +  +  a++vPL++g+ viG+l +
  KIR62957.1 267 LGRVRALMQAEYATLWLpAQGRHPEVLLTARIDGRGLLDFSKIPASVREQVVQQRQTVALGarlggdrVQLAMLRAASTKDAIVVPLRSGEAVIGTLEV 365
                 5566677788888888844444457777787777776654333333334444444444444332223222244455667889***************97 PP

       GAF_3 101 .astkpra.fdaedlelleslArqiataier 129
                  ++ ++   f+++d+  +e++A+++a a+e+
  KIR62957.1 366 vNRLSDVGhFTPSDVPVIETVAAHAAVALEN 396
                 466655556*********************8 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.5
       GAF_3  86 vPLvagrqviGvlalastkpra 107
                 v+++a+ +v+ vl++  ++ r+
  KIR62957.1 429 VSIRAPGEVVAVLLFDVDGLRQ 450
                 7788877888888887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       875  (0.0488036); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.26s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 5696.87
//
Query:       KIR62958.1  [L=55]
Description: 50S ribosomal protein L33 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-23   82.5   3.3    2.3e-23   82.4   3.3    1.0  1  Ribosomal_L33  Ribosomal protein L33


Domain annotation for each model (and alignments):
>> Ribosomal_L33  Ribosomal protein L33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   3.3   1.3e-27   2.3e-23       2      47 .]      10      55 .]       9      55 .] 0.98

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 1.3e-27
                   EEEEEET......EEEEETT..--S--EEEEEETTTTEEEEEEEE- CS
  Ribosomal_L33  2 kvtLeCtecksrnYtttknkkntperLelkKYcprcrkhtlhkEtK 47
                   k+tL+C eck+rnY+t+kn++n p+r+elkK+cpr  kht+h+Et+
     KIR62958.1 10 KITLACVECKERNYITRKNRRNDPDRIELKKFCPRDGKHTVHRETR 55
                   8*******************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 398.08
//
Query:       KIR62959.1  [L=148]
Description: hypothetical protein TK50_18745 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-37  128.1   0.2    2.5e-37  127.9   0.2    1.0  1  MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
    2.2e-06   27.2   0.1      3e-06   26.8   0.1    1.2  1  MaoC_dehydratas  MaoC like domain


Domain annotation for each model (and alignments):
>> MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.9   0.2   2.8e-41   2.5e-37       3     130 ..       8     136 ..       6     138 .. 0.93

  Alignments for each domain:
  == domain 1  score: 127.9 bits;  conditional E-value: 2.8e-41
  MaoC_dehydrat_N   3 iGaefep.vkaevereavrefakavgetnpayldeeaaraagyrsliaPptflivlatkap.ell..ealgidlsrllhgeqefeyhepiraGD 92 
                      +G+ + p   ++v+re++refa a+g+++pa+ d+eaara g+ +++aPptf++v+ ++a+ ++   +alg+d+sr++hg+q+f y +p++aGD
       KIR62959.1   8 VGRTYPPtAPYQVGREKIREFATAIGAADPAHHDPEAARALGHPDVVAPPTFPVVITMAATrQIVddPALGVDYSRVVHGDQRFAYTRPVVAGD 101
                      8999966256************************************************887645568999************************ PP

  MaoC_dehydrat_N  93 elttesriadvydkkgvGalefivvettvtnqrGepva 130
                      el ++++i+d+  +   G ++f++++t v++++Gepv+
       KIR62959.1 102 ELVCVNTIEDITSR---GGHDFLTTRTDVSTAAGEPVV 136
                      *************9...99******************8 PP

>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   3.3e-10     3e-06       6     108 ..       8     116 ..       5     131 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.3e-10
                      TTSEEEEEEEEEEEHHHHHHHHHHHT---GGGT-HHHHHHTTTSSSB--HHH....HHHHHHHHHHHHHSTT..EGGGEEEEEEEE-S--BTTC CS
  MaoC_dehydratas   6 igekvetekeitvteadialyalvsgDlnpiHvdpefAkkagfggpIahGml....tlaivaklveeelgdn..vvarvgeikvrFtkpVlpgd 93 
                      +g+++   ++++v +++i+ +a++ g   p H dpe+A++ g + ++a   +    t+a+ +++v + +      +   g +++ +t+pV +gd
       KIR62959.1   8 VGRTYPPTAPYQVGREKIREFATAIGAADPAHHDPEAARALGHPDVVAPPTFpvviTMAATRQIVDDPALGVdySRVVHGDQRFAYTRPVVAGD 101
                      57777778999999*********************************987653333888888888776666566777888899999******** PP

                      EEEEEEEEEEEEEEE CS
  MaoC_dehydratas  94 tlkvelevvgkrdvr 108
                      +l    + ++ +++ 
       KIR62959.1 102 ELVCVNTIEDITSRG 116
                      **9888887765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1127.46
//
Query:       KIR62960.1  [L=130]
Description: dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-25   87.8   0.1    4.4e-25   87.6   0.1    1.1  1  MaoC_dehydratas  MaoC like domain
    8.8e-06   25.9   0.0    1.2e-05   25.5   0.0    1.4  1  MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
     0.0018   17.6   0.1     0.0022   17.3   0.1    1.1  1  PS-DH            Polyketide synthase dehydratase


Domain annotation for each model (and alignments):
>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.1   7.3e-29   4.4e-25      14     105 ..       6      96 ..       1     112 [. 0.89

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 7.3e-29
                      EEEEEEHHHHHHHHHHHT---GGGT-HHHHHHTTTSSSB--HHHHHHHHHHHHHHHHSTTEGGGEEEEEEEE-S--B.TTCEEEEEEEEEEEE CS
  MaoC_dehydratas  14 keitvteadialyalvsgDlnpiHvdpefAkkagfggpIahGmltlaivaklveeelgdnvvarvgeikvrFtkpVl.pgdtlkvelevvgkr 105
                      ++  vt+ad ++ya++sgD+npiH+++  A  +g++g+IahGm+t+a+v ++v+e++g   +  v  + vrF++pV  p+d+  +e+ev++k 
       KIR62960.1   6 QTFRVTRADLVRYAGASGDFNPIHWSDRVATGVGLPGVIAHGMFTMALVGRAVAEWAGA--PDAVVDYGVRFARPVVvPDDDAGTEIEVTAKV 96 
                      677899*****************************************************..999**********9752778999999999854 PP

>> MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0     2e-09   1.2e-05       6      64 ..       2      58 ..       1     121 [. 0.77

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 2e-09
  MaoC_dehydrat_N  6 efepvkaevereavrefakavgetnpayldeeaaraagyrsliaPptflivlatkapel 64
                     e++++++ v+r ++ ++a a g+ np+++++  a+  g  ++ia  +f+++l  +a  +
       KIR62960.1  2 ELSTQTFRVTRADLVRYAGASGDFNPIHWSDRVATGVGLPGVIAHGMFTMALVGRA--V 58
                     567899********************************************998766..3 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   3.6e-07    0.0022      43     112 ..      47     116 ..      40     129 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.6e-07
                 TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS.-EEEEEEEEE-TTS-E....EEEEEEE-SS- CS
       PS-DH  43 gagylemaleAarqltgeskavelrdvsilkalvlpede.pvevqlslepeedgadrawvefeifSreggg 112
                 g + ++++  A+++ +g  +av+   v++ +++v+p+d+ ++e++++++ +e ga +   +  i++  +g+
  KIR62960.1  47 GMFTMALVGRAVAEWAGAPDAVVDYGVRFARPVVVPDDDaGTEIEVTAKVRE-GAGEGLTRLDITATCRGE 116
                 6777889999999999999888888************************995.555455666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 903.29
//
Query:       KIR62961.1  [L=240]
Description: transcription termination factor NusG [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-22   79.9   0.0      3e-22   79.0   0.0    1.5  1  NusG      Transcription termination factor nusG
     0.0049   16.8   0.0      0.014   15.3   0.0    1.8  1  KOW       KOW motif


Domain annotation for each model (and alignments):
>> NusG  Transcription termination factor nusG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0   3.3e-26     3e-22       2      92 ..      61     164 ..      60     167 .. 0.89

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 3.3e-26
                 EEEEEEE-TTTHHHHHHHH...HHHCT-.....EEE-SCEEEEEEETTEEE....CSSTTEEEEEE---CHHHHHHHCSTTEEEE-EETT...SSCC-E CS
                 xxxxxxxxxxxxxxxxxxx...xxxxxx.....xxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxx RF
        NusG   2 kWYvlqvepgkekkvkenL...leeegl.....evivPaeekveirqgkkk....klfpgyifikadmndkllmairktpgVtgfvrvgg...eskpvp 85 
                 +WYv++ + g+e+kvk+nL   + + ++     +v vP++e+ve+++gk+     k+fpgyi+++++++ ++ + +r+tpgVtgfv  g     ++p+p
  KIR62961.1  61 DWYVVHSYAGYENKVKTNLetrITSLDMedyiyQVEVPTREEVEVKNGKRSqiqaKVFPGYILVRMELTAESYSCVRNTPGVTGFV--GAtdrADRPAP 157
                 7******************88844444466699******999999****9999*********************************..55558899*** PP

                 B-HHHHH CS
                 xxxxxxx RF
        NusG  86 lseeevq 92 
                 ls +ev 
  KIR62961.1 158 LSLDEVL 164
                 *999986 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.5e-06     0.014       1      31 [.     189     223 ..     189     224 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-06
                 TTSEEEESSSTTTTCEEEEEEEETTT....TEEEE CS
         KOW   1 pGdhVkVvsGphkGktGkVvkvdqhk....vrVfv 31 
                 +Gd V V++G ++   +++ +++ +     v V +
  KIR62961.1 189 VGDSVTVTDGAFASLPATISEINADQqklkVLVSI 223
                 7**********************999887766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1763.66
//
Query:       KIR62962.1  [L=143]
Description: 50S ribosomal protein L11 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-29   99.4   0.1    1.3e-28   98.7   0.1    1.4  1  Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
      1e-27   96.4   0.6    1.7e-27   95.7   0.6    1.3  1  Ribosomal_L11    Ribosomal protein L11, RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.1   1.4e-32   1.3e-28       1      65 []       4      68 ..       3      68 .. 0.98

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 1.4e-32
  Ribosomal_L11_N  1 akkvvkvvklrvpaGkAtpaPplGpaLGplGlnikkfckefnkaTkdkkglripVkitvyqdrsf 65
                     +kk vk++ l+++aG+AtpaPp+GpaLG++G+ni++fck +n++T+ + g+++p++i+vy+drsf
       KIR62962.1  4 KKKLVKTFTLQLKAGQATPAPPVGPALGQHGVNIMEFCKTYNAQTEAQRGDIVPAEISVYEDRSF 68
                     578******************************************99*****************9 PP

>> Ribosomal_L11  Ribosomal protein L11, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.6   1.8e-31   1.7e-27       1      70 []      73     141 ..      73     141 .. 0.99

  Alignments for each domain:
  == domain 1  score: 95.7 bits;  conditional E-value: 1.8e-31
                    ---SHHHHHHHHHTXSSXXSSTTTSXXEEEEHHHHHHHHHHHGGGHTXS.SHHHHHHHHHHHHCTTTEEE CS
  Ribosomal_L11   1 ktPptsylLkkaagiekgsgkpgketvGtvslkqvyeIAkiKksdlnaalsleaavksilgtArsmGikV 70 
                    ktPp++ lL+kaag++kgsg+p+ke+vG+v+ +q++eIA+ K+ dlna+ +l++a k+i+gtArsmG++V
     KIR62962.1  73 KTPPAAQLLIKAAGVQKGSGNPHKEKVGSVTRAQLREIAEKKMVDLNAN-DLDQAEKIIAGTARSMGLTV 141
                    8************************************************.******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1225.74
//
Query:       KIR62963.1  [L=237]
Description: 50S ribosomal protein L1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-50  169.9   0.0      7e-50  169.6   0.0    1.1  1  Ribosomal_L1  Ribosomal protein L1p/L10e family
  ------ inclusion threshold ------
       0.11   12.7   0.4          2    8.7   0.3    2.3  2  DUF4031       Protein of unknown function (DUF4031)


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.6   0.0   7.8e-54     7e-50       3     204 .]      31     219 ..      26     219 .. 0.98

  Alignments for each domain:
  == domain 1  score: 169.6 bits;  conditional E-value: 7.8e-54
                   HHS-SSS--EEEEEEEESSS-TTSGGG--EEEEE-STSTSSCS-EEEEE-HHHHH...HHHHTT..-SEEETCHHHHHHT-HHHHHHTCCH-SEEEE CS
  Ribosomal_L1   3 khakkkfdesveialnlttkkpkkadqrkpgkipLphplgkevkiclitkdpqaeyakeakeagriakviglkklkkkyksfeakrkllkefdlfla 99 
                    + ++kfd++ve+a++l +++p+kadq+++g ++Lph++gk++++ +++++ +ae   ea +ag  a+ +g+++l +++      + ++ +fd ++a
    KIR62963.1  31 DTTSTKFDATVEVAMRL-GVDPRKADQMVRGVVNLPHGTGKTARVIVFAAGAKAE---EAVAAG--ADEVGTDELVARI------QGGWLDFDAAIA 115
                   45678************.*************************************...******..*************......9*********** PP

                   EGGGHHHHHHHCHHHHGGGT-S-ECC..CT.BTS-HHHHHHHHCTTEEEEE-TTTSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTSTTT..SGSEE CS
  Ribosomal_L1 100 ddrimpllpklLGkvfgkrkkmPipvltkgtvkedvkkevekalkstvvvrldkgtclsvkvGklsftaeelaeNieavvkalvekvpkk..wknik 194
                   +++ m ++++ + +++g+r++mP+p+  +gtv++dv+k+v +++++++ +r+dk+++l++ +Gk+sf++ +l++N  av++++ +++p+   +k++k
    KIR62963.1 116 TPDQMAKIGR-IARILGPRGLMPNPK--TGTVTMDVTKAVSDIKGGKITFRVDKHSNLHLIIGKASFSETQLIDNYAAVLDEVLRAKPSAakGKYLK 209
                   **********.***************..9*********************************************************999999***** PP

                   EEEEEETTS- CS
  Ribosomal_L1 195 siylkttmsp 204
                   +++l+ttm+p
    KIR62963.1 210 KVTLTTTMGP 219
                   *********8 PP

>> DUF4031  Protein of unknown function (DUF4031)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.039   3.5e+02      23      42 ..      37      56 ..      28      62 .. 0.82
   2 ?    8.7   0.3   0.00022         2      54      77 ..      81     104 ..      78     105 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.039
     DUF4031 23 leELhafAarlGvprrafqr 42
                 +  ++ A rlGv++r  ++
  KIR62963.1 37 FDATVEVAMRLGVDPRKADQ 56
                5667899******9998887 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00022
     DUF4031  54 erraeavalGAvevssrelvrrlr 77 
                 ++ +eava+GA ev++ elv+r++
  KIR62963.1  81 AKAEEAVAAGADEVGTDELVARIQ 104
                 57899***************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1838.54
//
Query:       KIR62964.1  [L=229]
Description: hypothetical protein TK50_18785 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        3.4    6.7   4.1        4.4    6.3   4.1    1.1  1  ABC2_membrane_3  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   4.1   0.00024       4.4     206     289 ..      84     178 ..      75     219 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00024
  ABC2_membrane_3 206 wlskilgdflvyllqlllilll..afgl...gipfg......nlglllllfllfglayialgyllsslfknsetaqilifivilllsgffgglf 288
                      w + +l+ ++++l +++++l++  ++g    +++ g      ++ l ++ +ll + a++alg+l s +++ s+   ++++++  + s+++g++ 
       KIR62964.1  84 WAAGLLAALVAGLGTVAVALAFpwLVGGvtgQVEPGgpsvaaGVALGVWAHLLALPAAVALGALASRAVTGSAGYGVAVLALGAVGSLVLGLSA 177
                      7777777778888888888876653333688444443322235566669999999999999999999999887777778888887777777665 PP

  ABC2_membrane_3 289 p 289
                      +
       KIR62964.1 178 S 178
                      4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1672.47
//
Query:       KIR62965.1  [L=182]
Description: 50S ribosomal protein L10 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-25   86.9   0.0    1.3e-24   86.2   0.0    1.4  1  Ribosomal_L10  Ribosomal protein L10
     0.0054   15.7   0.1     0.0089   15.0   0.0    1.3  1  DUF3182        Protein of unknown function (DUF3182)


Domain annotation for each model (and alignments):
>> Ribosomal_L10  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.0   1.5e-28   1.3e-24       3     100 .]       7     102 ..       5     102 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 1.5e-28
                    CCCHCCCCCCCCCCCTTSSEEEEEE-TTS-HHHHHHCCCHHHHHGCEEEEESCCCCCCCCHCCTSS.SSCGCCSSSEEEEEESS-TCHHHHCCCCC CS
  Ribosomal_L10   3 kekKeelvkelkellkkyksvvvvdyegltvaqlqelRkklrengaelkvvKntlmrrAleetgeeeklkellkgpvalvftnedpvalakvleef 98 
                    +++K+  v+e+++++ ++ + v+++y+gltv+ql++lR++l ++  ++ v+Kntl++rA++++g++  l+el++gp+al f+++d+v++ak l +f
     KIR62965.1   7 RADKATAVAEMTDNFRNAGATVLTEYRGLTVSQLTQLRRSLGKE-TTYTVAKNTLAKRAAADAGIS-GLDELFTGPTALTFVSGDVVEAAKGLRDF 100
                    899**************************************999.********************7.9**************************** PP

                    HH CS
  Ribosomal_L10  99 ak 100
                    ak
     KIR62965.1 101 AK 102
                    87 PP

>> DUF3182  Protein of unknown function (DUF3182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   9.9e-07    0.0089      30      87 ..      34      92 ..      11     106 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.9e-07
     DUF3182 30 glefageleaatr.eeaklylvPaetlvgeeaaelGiegeedlfGGvvphafvatKait 87
                gl++++ ++  ++  ++++y+v ++tl ++ aa+ Gi+g ++lf G    +fv + ++ 
  KIR62965.1 34 GLTVSQLTQLRRSlGKETTYTVAKNTLAKRAAADAGISGLDELFTGPTALTFVSGDVVE 92
                5544443333332145667**********************************998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1319.13
//
Query:       KIR62966.1  [L=129]
Description: 50S ribosomal protein L7 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-27   93.4  10.9    8.2e-27   93.4  10.9    1.8  2  Ribosomal_L12    Ribosomal protein L7/L12 C-terminal domain
    6.6e-19   67.4   9.1    1.1e-18   66.7   7.0    2.2  2  Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
  ------ inclusion threshold ------
        3.2    8.4  23.3      0.055   14.1   9.3    2.1  2  Ribosomal_60s    60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> Ribosomal_L12  Ribosomal protein L7/L12 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.4   2.4e+03      24      39 ..      15      30 ..      10      43 .. 0.71
   2 !   93.4  10.9   1.4e-30   8.2e-27       1      67 []      63     129 .]      63     129 .] 0.99

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.4
                   ---HHHHHHHHTTTTS CS
  Ribosomal_L12 24 glgLkeaKdlVeaapk 39
                   ++ L e  ++V +  +
     KIR62966.1 15 EMTLIELSEFVKQFEE 30
                   5677777777776554 PP

  == domain 2  score: 93.4 bits;  conditional E-value: 1.4e-30
                    EEEEEEE-TT-HHHHHHHHHHHH---HHHHHHHHTTTTSTEEEEE-HHHHHHHHHHHHCTT-EEEEE CS
  Ribosomal_L12   1 fdViLksagakKiaVIKaVreitglgLkeaKdlVeaapkvvkegvskeeAeeikkkLeeaGAevelk 67 
                    fdViL++ g kKi+VIK+Vre+tglgLkeaKd Veaapk++ e+v+ke Ae++k+kLe  GA+v+lk
     KIR62966.1  63 FDVILEADGGKKIQVIKVVRELTGLGLKEAKDAVEAAPKAILEKVNKETAEKAKAKLEGEGAKVTLK 129
                    9*****************************************************************8 PP

>> Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   7.0   1.8e-22   1.1e-18       2      48 .]       6      52 ..       5      56 .. 0.86
   2 ?   -0.3   0.0      0.15   8.9e+02       4      22 ..      79      97 ..      76     100 .. 0.76

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 1.8e-22
                     HHHHHHHHHTSBHHHHHHHHHHHHHHTTHHHHHHHHHH.HHHHHHHH CS
  Ribosomal_L12_N  2 ieeiieaikeltvLElseLvkalEekFGVsAAAPvavaaaaaaaaaa 48
                     ++e+++a+ke+t++Else+vk++Ee+F V+AAAPvavaaa++a++aa
       KIR62966.1  6 TDELLDAFKEMTLIELSEFVKQFEETFEVTAAAPVAVAAAGGAGGAA 52
                     79************************************774444443 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.15
                     HHHHHHHTSBHHHHHHHHH CS
  Ribosomal_L12_N  4 eiieaikeltvLElseLvk 22
                     +++ ++ +l + E+++ v+
       KIR62966.1 79 KVVRELTGLGLKEAKDAVE 97
                     5778888888999887555 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   9.3   9.2e-06     0.055      34      78 ..      20      62 ..       3      73 .. 0.52
   2 ?    1.1   5.8       0.1   6.2e+02      42      73 ..      88     120 ..      63     124 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 9.2e-06
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX CS
  Ribosomal_60s 34 dieellangaaklaaaaaaaaaaaaaaaaaaaaeekkkeeeeeEe 78
                   ++ e++++ ++ +   aaa+ a aaa++a  aa++ ++ee+   e
     KIR62966.1 20 ELSEFVKQFEETFEVTAAAPVAVAAAGGAGGAAAAPAEEEKD--E 62
                   455666666666554444444444444444333333333332..2 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.1
                    XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  42 gaakla.aaaaaaaaaaaaaaaaaaaeekkkee 73 
                    g + +  a+ aa+ a  ++ +++ a+++k+k e
     KIR62966.1  88 GLKEAKdAVEAAPKAILEKVNKETAEKAKAKLE 120
                    333333678888888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1156  (0.0644765); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 913.53
//
Query:       KIR62967.1  [L=1143]
Description: DNA-directed RNA polymerase subunit beta [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.6e-159  529.4   0.0   2.7e-158  527.1   0.0    1.9  2  RNA_pol_Rpb2_6   RNA polymerase Rpb2, domain 6
      3e-29  102.0   0.0    4.8e-29  101.3   0.0    1.3  1  RNA_pol_Rpb2_2   RNA polymerase Rpb2, domain 2
    3.5e-29  100.8   0.0    8.1e-29   99.6   0.0    1.7  1  RNA_pol_Rpb2_3   RNA polymerase Rpb2, domain 3
    1.6e-26   92.6   0.0    2.9e-26   91.7   0.0    1.5  1  RNA_pol_Rpb2_7   RNA polymerase Rpb2, domain 7
      2e-26   92.0   0.2    2.6e-25   88.4   0.5    2.5  2  RNA_pol_Rpb2_45  RNA polymerase beta subunit external 1 domai
      1e-21   77.4   0.0    4.9e-21   75.2   0.0    1.9  1  RNA_pol_Rpb2_1   RNA polymerase beta subunit


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.16   4.8e+02       3      30 ..     560     587 ..     558     594 .. 0.86
   2 !  527.1   0.0  8.9e-162  2.7e-158       1     390 []     611    1029 ..     611    1029 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.16
                     HT-SS-TTB-HHHHHHHHHHGGGB-S-- CS
  RNA_pol_Rpb2_6   3 klapvvehvqspriiiqaamekqalgiy 30 
                     + +p+ eh +++r ++ a+m++qa+ ++
      KIR62967.1 560 AMIPFLEHDDANRALMGANMQRQAVPLV 587
                     579********************97655 PP

  == domain 2  score: 527.1 bits;  conditional E-value: 8.9e-162
                      HHHT-SS-TTB-HHHHHHHHHHGGGB-S---TTTTT---SSEEEESS----SSB-S.TTTTTS.........GGGS-SEEEEEBBBS--TTTT CS
  RNA_pol_Rpb2_6    1 vaklapvvehvqspriiiqaamekqalgiyslnkfkrsnqktyllcinqkPlvktgdkveagqvl.dgpatekgelalGqnavVAvmsyeGYn 92  
                      va++ +v+e   ++ i+i++++++    +y l+kf+rsn  +   c+nqkP+v +gd+veagqv+ dgp+t+ ge+alG+n++VA+m++eG+n
      KIR62967.1  611 VAEVGGVIEDLCADYITIHQDDGHRR--TYLLHKFRRSNAGS---CVNQKPVVFEGDRVEAGQVIaDGPCTDEGEMALGRNLLVAFMCWEGHN 698 
                      5888999999999*****99777666..**************...************************************************ PP

                      TTT-EEEBCHHHHTTTT-EEEEEE..EEE--SSSS---.-S--..--SS-GGGS-TTSB--SS-EEETT-EEE---...B-----...----- CS
  RNA_pol_Rpb2_6   93 iEDaiilnerlvdrdvftsihikeyeveardtklgeeeitrdipnvseealkkLdedGivrvgaevkegdilvgkvt.kgeteltpeekllra 184 
                      +EDaiil++rlv++dv+tsihi+e+ev+ardtklg+eeitrdipnvsee l++Lde+Gi+r+gaev +gdilvgkvt kgeteltpee+llra
      KIR62967.1  699 YEDAIILSQRLVQQDVLTSIHIEEHEVDARDTKLGPEEITRDIPNVSEEMLADLDERGIIRIGAEVVPGDILVGKVTpKGETELTPEERLLRA 791 
                      ********************************************************************************************* PP

                      ------..-B---EE--TT-EEEEEEEEE.......EE-TT--EEEEEEEEEEE---TT-BEEETTS---BBEEEB-TTTSEEETTS---SEE CS
  RNA_pol_Rpb2_6  185 ifgekarevkdtslrvksgeegvVdkvkvfsrekgdelkagvnklvkvyvaqkRklqvGDKfasrhGqKGvvslilpqeDmPfledGivvDiv 277 
                      ifgekarev+dtsl+v++ge+g+V+ v++fsre+gdel++gvn+lv+vyvaqkRk+q GDK+a+rhG+KGv+s+ilp eDmPfledG++vDiv
      KIR62967.1  792 IFGEKAREVRDTSLKVPHGETGTVIGVRTFSREDGDELPPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVDIV 884 
                      ********************************************************************************************* PP

                      E-GGGCHHH-BTTHHHHHHHHHCCCS........................SSS--B--TT-...-HHHHHHHHHTTS-T........T-EE-E CS
  RNA_pol_Rpb2_6  278 lNPlgvPSRmtigqllEtllgkaaal........................egkkvdatvFdgakeeeikelLeeaglea........sGkevl 338 
                      lNPlgvPSRm+igq+lEt+lg++a++                         +++v+++vFdga eeei+ lL+++  ++        sGk +l
      KIR62967.1  885 LNPLGVPSRMNIGQVLETHLGWVAKTgwsvdgddaewkrqlrsieahesePDTNVATPVFDGAREEEISGLLASTLPNRdgkqligsSGKAQL 977 
                      ************************************************99889********************87777788888998****** PP

                      EETTTS-B-SS-EEB-EEEEEEBS--CCCS----SS--B-TTT--B-SCGGG CS
  RNA_pol_Rpb2_6  339 ydGrtGekleaeifvGviYylkLkhlvedKihaRstGpyslltqQPlgGkaq 390 
                      +dGr+Ge+l  +i vG+iY+lkL+hlv+dKihaRstGpys++tqQPlgGkaq
      KIR62967.1  978 FDGRSGEPLPDPIAVGYIYILKLNHLVDDKIHARSTGPYSMITQQPLGGKAQ 1029
                      **************************************************97 PP

>> RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.0   1.6e-32   4.8e-29       1     190 []     161     347 ..     161     347 .. 0.94

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 1.6e-32
                     -TSCEEEEE-SSSSSESSSCCEECCCEEEEECCCCSTSCEEEEECTTSSSEEEHHHHHHHTT--STTHHHHHHTSSSTTHHHHHHHHHHHHHHCT CS
  RNA_pol_Rpb2_2   1 rsngiyvekekdknkisatvtsslisqrgsvlklekdgktliwtriskkrkipivivlkAlglvsdreIlericydsedsqlleelleeleekee 95 
                     rs+g+y+ k++dk++ +  ++   i +rg++l++++d+++ + +ri++kr+  + ++lkA+g  s + I e+            ell ++ ek +
      KIR62967.1 161 RSPGVYFDKQPDKTSDRDLSSVKVIPSRGAWLEFDIDKRDTVGVRIDRKRRQAVTVLLKAIGW-SAERIREKFG--------WSELLMTTLEKDH 246
                     89************9989999999**************************************8.6566666555........47888889999** PP

                     SSSCHHHHHHHHHCSSTTSSSCCCCCHHHHHHH......CHHHHHHHTTTTSSTTTTTSSSTCHH..HHHHHHHHHHHHHHHHTTS..SSS--TT CS
  RNA_pol_Rpb2_2  96 iqtqeealdyigkvvalrrgeearlqsareilq......krydlgeigreklnkhlglseslenkrlkaqdilymidrLlslklgr..revDDiD 182
                     i+ q+eal  i++  +lr+ge+++ ++a+ +l+      kryd  ++gr+k+nk+l+l+ + ++ +l+  di++ +++L  l++g+  +e DDiD
      KIR62967.1 247 IAGQDEALLDIYR--KLRPGEPPTRENAQTLLDnlffnpKRYDVAKVGRYKFNKKLELDVPITTGTLTEDDIVATVEYLCRLHAGEdgYEADDID 339
                     ************9..**********************************************88888****************98765589***** PP

                     SGGGEEEE CS
  RNA_pol_Rpb2_2 183 hlgnkRvr 190
                     h+gn+R+r
      KIR62967.1 340 HFGNRRLR 347
                     ******97 PP

>> RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.0   2.7e-32   8.1e-29       1      68 []     406     474 ..     406     474 .. 0.99

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 2.7e-32
  RNA_pol_Rpb2_3   1 qvldrlnplselshlrrvssl.rgglskerkttevRdlhpshwGriCpveTPEGencGlvksLallarv 68 
                     q++d++npl+ l+h rr+s+l +ggls+er+++evRd+hpsh+Gr+Cp+eTPEG+n+Gl+  L+++arv
      KIR62967.1 406 QFMDQTNPLAGLTHRRRLSALgPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGALSTFARV 474
                     89*****************************************************************98 PP

>> RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.0   9.6e-30   2.9e-26       1      85 [.    1031    1105 ..    1031    1107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 9.6e-30
                      BBEEEEHHHHHHHHHHTBHHHHHHHHTTTTTEEEEEEESSSSSCCCEEEBTTTTCSSSEEEEEEEHHHHHHHHHHHHTTBEEEEE CS
  RNA_pol_Rpb2_7    1 GGlrfGEMErdaliayGaaalLkerltikSDavevdvcgrckllaaaneCkivkseekiekveipeafklLlqeLqslgialkll 85  
                      GG+rfGEME++a++ayGaa+ L+e+ltikSD    dv gr+k+++a     ivk+e+ +e++ ipe+fk+Ll+eLqsl++++++l
      KIR62967.1 1031 GGQRFGEMECWAMQAYGAAYALQELLTIKSD----DVLGRVKVYEA-----IVKGENIPEPG-IPESFKVLLKELQSLCLNVEVL 1105
                      9******************************....***********.....***********.******************9986 PP

>> RNA_pol_Rpb2_45  RNA polymerase beta subunit external 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.5   8.8e-29   2.6e-25       1      65 []     484     550 ..     484     550 .. 0.96
   2 ?   -0.3   0.0      0.44   1.3e+03      36      55 ..    1001    1020 ..     990    1023 .. 0.83

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 8.8e-29
                      EEEEE.TEEEEEEEEEEHHHHTTSEEE-SSS-BETTSCBSSSEEEEECS.SCEEEEEGGG-SEEESS CS
  RNA_pol_Rpb2_45   1 YrkVe.gkvtdevvYLtAdeEekyviAqAnapldeegrfveerVlaRrk.gevelvepeeVdymDVS 65 
                      YrkV+ g+vtd+++YLtAdeE+++v AqAnapl+++g+f+e+rVl+Rrk ge+e v p  VdymDVS
       KIR62967.1 484 YRKVVdGRVTDQIDYLTADEEDRFVKAQANAPLKADGTFAEDRVLCRRKgGETEDVVPGAVDYMDVS 550
                      9***99*****************************************6537***************9 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.44
                       SCBSSSEEEEECSSCEEEEE CS
  RNA_pol_Rpb2_45   36 grfveerVlaRrkgevelve 55  
                       +++v+++++aR  g + +++
       KIR62967.1 1001 NHLVDDKIHARSTGPYSMIT 1020
                       799********999888876 PP

>> RNA_pol_Rpb2_1  RNA polymerase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.0   1.6e-24   4.9e-21      46     201 ..      83     391 ..      34     393 .. 0.90

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 1.6e-24
                     EEEEEESCSSECTTSCEEES.HHHHHHCTSBXEEEEEEEEEEEECCCCTCCEEEEEEEEEEEEEXBTTSTTSSSTTS.HHHHHHTTS.TTS..SS CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1  46 vsirlgkPvvdesdasereiyPkearlrnltYsaplyvklklvvyekdnkeeikeeevyiGelPlMlrskacvlseaseeelvelkEcpldqGGy 140
                      s++ + P +de      +   +e+++++ltY apl+v  + + +   ++ eik++ v++G+ P+M+                          G+
      KIR62967.1  83 MSLSFSAPRFDE-----VKASIEECKEKDLTYCAPLFVTAEFTNN---TTGEIKSQTVFMGDFPMMTPK------------------------GT 145
                     466777888888.....444459******************9997...*********************........................** PP

                     EEETTCEEEEXEEEE................................................................................ CS
                     xxxxxxxxxxxxxxx................................................................................ RF
  RNA_pol_Rpb2_1 141 FiinGtekvivaqek................................................................................ 155
                     FiinGte+v+v+q+                                                                                 
      KIR62967.1 146 FIINGTERVVVSQLVrspgvyfdkqpdktsdrdlssvkvipsrgawlefdidkrdtvgvridrkrrqavtvllkaigwsaerirekfgwsellmt 240
                     *********************************************************************************************** PP

                     ............................................................................................... CS
                     ............................................................................................... RF
  RNA_pol_Rpb2_1 156 ............................................................................................... 155
                                                                                                                    
      KIR62967.1 241 tlekdhiagqdealldiyrklrpgepptrenaqtlldnlffnpkrydvakvgrykfnkkleldvpittgtlteddivatveylcrlhagedgyea 335
                     *********************************************************************************************** PP

                     ............XHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSSSHHHHSCSHHH CS
                     ............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1 156 ............laGeLlaslfrvllkklerdvkerlqksleklddlmlqllvnakpi 201
                                 ++GeL++++ rv+l ++er v+er+  + ++ +++++q l+n +p+
      KIR62967.1 336 ddidhfgnrrlrTVGELIQNQVRVGLSRMERVVRERM--TTQDVEAITPQTLINIRPV 391
                     *************************************..999***********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 8031.25
//
Query:       KIR62968.1  [L=1295]
Description: DNA-directed RNA polymerase subunit beta' [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-83  280.4   0.0    3.8e-83  279.4   0.0    1.5  1  RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
    6.3e-66  222.5   0.4    2.5e-64  217.3   0.4    2.2  1  RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
    1.2e-38  133.0   0.0    9.2e-28   97.5   0.0    2.5  2  RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
    1.8e-23   83.2   0.0    3.7e-23   82.2   0.0    1.6  1  RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
    7.5e-11   41.9   0.0    2.2e-10   40.4   0.0    1.7  1  RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
  ------ inclusion threshold ------
       0.54    9.6   4.7       0.91    8.9   4.7    1.3  1  Cluap1          Clusterin-associated protein-1
        9.3    6.1  11.6        7.8    6.3   0.9    2.5  2  CdvA            CdvA-like coiled-coil domain


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.4   0.0   1.5e-86   3.8e-83       4     312 .]       7     417 ..       4     417 .. 0.77

  Alignments for each domain:
  == domain 1  score: 279.4 bits;  conditional E-value: 1.5e-86
                     --EEEEEE--HHHHHHH-SBB--STTSTCSTSSSSBBSSSSSSSSS-SSSSSTSTTTSSTTT.........T---..........--EEEEEECE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxx..........xxxxxxxxxx RF
  RNA_pol_Rpb1_1   4 ikeiqfgiaspeeirkwSvvevtkaetieekslkPeegGllDerlgtidkdleCetCgkkkk.........eCeg..........hfGhieLakP 79 
                     ++e+++g+a+ ++ir+wS++ev+k+eti++++lkPe+ Gl++e+++++++d+eC +Cgk+k          +C +          ++GhieLa+P
      KIR62968.1   7 FDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC-YCGKYKRvrfkgiiceRCGVevtrskvrreRMGHIELAAP 100
                     7899**************************************************.*************99988889999999************* PP

                     EE-HHHHHH...........HHHHCTTCETTTTEBSS-TT...........SH....HHHHHHCSSSCC.......................... CS
                     xxxxxxxxx...........xxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxx.......................... RF
  RNA_pol_Rpb1_1  80 vfhigffkl...........ilkilecvckecskllldee...........kkkllsklkkrekleelk.......................... 126
                     v hi++fk              k+le+++++ s+++ +             ++++l ++++ e+ ++ +                          
      KIR62968.1 101 VTHIWYFKGvpsrlgylldlAPKDLEKIIYFASYVVTSVDaesrhrdlstiENEILAEKRQSENSRDSEiekraakleadlaeleaegakadvrr 195
                     *******************999**************99987777777776644444444433333333355444555555555555555554444 PP

                     ..................CCHHHHHHHHCCS-BE-..................................SSSSB-EEE......EEETTEEEEEE CS
                     ..................xxxxxxxxxxxxxxxxx..................................xxxxxxxxx......xxxxxxxxxxx RF
  RNA_pol_Rpb1_1 127 ..................krlkaieelckkinlce..................................kCgavqpkl......eeegeklkaal 163
                                       +               e                                  +       +       e  + l++++
      KIR62968.1 196 kvkeggeremrqirdraqR---------------EidrldevldtfrklepkqlvtdellyrelrdrfgE-------YftggmgAEAIKALVQNM 268
                     4444444444444444331...............033333333333333333344444444433333330.......033333333444444444 PP

                     SSSST.....SCEEEE-HHHHHHHHHCSTHHHHHHTTSBTTTB-GGGCCECCEEE--GGGS-BEESSSSSEEBECCCCHHHHHHHHHHHHHHHHH CS
                     xxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 164 kkske.....eekeklsaekvkkllkriededvevlgfkssgsrPewliltvlPVpPpeiRPsvqldggrrsedDlteklrdiikrNnrLkkaee 253
                     + + e     e+ ++ + ++  + lkr++    +v  f + ++ P  ++l ++PV+Pp++RP+vqldggr++++Dl++++r++i+rNnrLk+ ++
      KIR62968.1 269 DLDAEaeslrETIRSGKGQRKIRALKRLK----VVAAFLNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLID 359
                     44333555544446777788889999999....999*********************************************************** PP

                     SSSSSTCHHHHHHHHHHHHHHCC-TTSSSSSEEBSTTSSS--THHHHHTSSSSCCCCCT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 254 egapeliieeekelLQehvatlfdneisglkpatqkskrplkslsqrLkGKeGrfRgnL 312
                      gape+i+++ek++LQe+v++lfdn  +g +p+t   +rplksls++LkGK+GrfR+nL
      KIR62968.1 360 LGAPEIIVNNEKRMLQEAVDALFDNGRRG-RPVTGPGNRPLKSLSDMLKGKQGRFRQNL 417
                     *****************************.999*************************9 PP

>> RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.3   0.4   9.8e-68   2.5e-64       1     265 [.     835    1197 ..     835    1199 .. 0.91

  Alignments for each domain:
  == domain 1  score: 217.3 bits;  conditional E-value: 9.8e-68
                      B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEETTSEEEETTS-EEESSGGGTS........................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
  RNA_pol_Rpb1_5    1 GLkvkefffhtmggReGLiDtAvkTaesGYlqRrlvkaledvvvkyddtvrnsggeivqflygedg........................... 66  
                      GL+v e+f++t+g+R+GL+DtA++Ta+sGYl+Rrlv++ +dv+++++d++++  + + q+ + +dg                           
      KIR62968.1  835 GLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPM-QIGERRDGklyvhehaetsvhartladdikgpdgt 926 
                      9**************************************************999986.788888899************************** PP

                      ....................................................B--TT-BHHHHHHHHHHHHHHCCCSSTTSSTCSSTSSSSSS CS
                      ....................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5   67 ....................................................lvepGeavGiiaaQSiGePgTQltlnTFHfaGvasknvtlG 107 
                                                                           v++GeavGiiaaQSiGePgTQlt++TFH++Gva + +t+G
      KIR62968.1  927 vvahrgqdinsilvdaivaagtetvrvrsvltcesklgvcgacygrslptgkTVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQG 1019
                      ********************************************************************************************* PP

                      HHHHHHHHTT-SS-SS-EEEEEB-SSSSSCHHHCHHHHHHHSECBTTEEEEEEEEEEEEEEETEEEEEEECS--HHHHTTSTT..TBETTTEE CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
  RNA_pol_Rpb1_5  108 vprlkeilnvskniksksltvllvdeeakelekakkvkkaiekgikkikrilvkeaekgkeeekelvletegvnlsevlkvee..vvdageil 198 
                      +pr++ei     + + +++++ + d+  + + +          + +  ++i+v+ ++ ++e         + ++++  l  ++  +v++ge l
      KIR62968.1 1020 LPRVQEI----FEARVPKGKAPIADTPGRIRIE----------DGERSRKIIVVPDDGSDEI------VYDKISKRVRLRAHDgdHVEVGEKL 1092
                      *******....4556788999999988655554..........3355677888877766555......346777777777766689******* PP

                      ES...SHHHHHHHHCHHHHHHHHHHHHHHHHHHTTS---HHHHHHHHHHHTTTSS---SSTT............................... CS
                      xx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................... RF
  RNA_pol_Rpb1_5  199 sn...diaeileilgieaarkallkeiqevykvqgvsvndrHlelivdqmtkkgeivavnrs............................... 257 
                      ++   d++e l+ilg +a++ +l++e+qevy++qgv + d+H+e+i++qm+k++++++ + +                               
      KIR62968.1 1093 TEgtiDPHELLRILGPRAVQVHLTQEVQEVYRSQGVLIHDKHIEIIIRQMLKRVTVIDSGSTeflpgvlvdralfesenrrlvgeggepaagr 1185
                      ***********************************************************9998888888888888888888888888888888 PP

                      ....CHCCSSSH CS
                      ....xxxxxxxx RF
  RNA_pol_Rpb1_5  258 ....Ginkaels 265 
                          Gi+ka+l+
      KIR62968.1 1186 pvlmGITKASLA 1197
                      888888888765 PP

>> RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.2e-11   3.1e-08       1      44 [.     419     462 ..     419     479 .. 0.84
   2 !   97.5   0.0   3.6e-31   9.2e-28      72     165 ..     467     560 ..     459     561 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.2e-11
                     SEEESSEEEEEEEEESSS-TTEEEEEHHHHTTSEEEEE-STTTH CS
  RNA_pol_Rpb1_2   1 GkrvdysaRsvispdpnlkldevgvPisvakkltvpeivtelni 44 
                     Gkrvdys+Rsvi+++p+lkl++ g+P+++a  l+ p ++++l  
      KIR62968.1 419 GKRVDYSGRSVIVVGPKLKLHQCGLPKQMALELFKPFVMKRLVD 462
                     9**********************************998877643 PP

  == domain 2  score: 97.5 bits;  conditional E-value: 3.6e-31
                     EETTTT-SCHHCCTTTTSEEEEE--TTSEEEEE-SSTTSGGGEEEEEEEEESSSSEEEEGGGHCCCT--SSS-EEEEE--SSHHHHHHHHHCSB CS
  RNA_pol_Rpb1_2  72 kklkakkrklakelekgdiverhvkdgdvvllNRqPsLhklsimahrvkvlekktlrlnlsvttayNaDFDGDemnlhlpqseearaEaeelll 165
                     +++k  kr ++++  + + v ++v+ +  vllNR+P+Lh+l+i+a++ +++e+k+++++ +v+ta+NaDFDGD+m++h+p s ea+aEa+ l+l
      KIR62968.1 467 QNIKSAKRMVERQRPVVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQMAVHVPLSAEAQAEARILML 560
                     4555555555555566679999********************************************************************9996 PP

>> RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.0   1.5e-26   3.7e-23       1     157 []     564     728 ..     564     728 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 1.5e-26
                     CSEETTTTEESSS--THHHHHHHHHSSTT........EEEEHHHHHHHHHHSSSCCSSSSSSSSSBESS.SE....................... CS
  RNA_pol_Rpb1_3   1 nilspqsgkPvigivQDsllGvyllTked........vfidreeaqqllykgvgsdsktvtlrpailkp.ke....................... 63 
                     nil+p++gkPv +++QD+++G+y lT+          +f++ +ea ++++ g      +++l++++ ++ +                        
      KIR62968.1 564 NILKPADGKPVTMPTQDMVIGLYHLTHLTtgergegrAFSSDAEARMAFDAG------ELHLQAPVRIRlRGlvgvdngagaqpwvapegwvege 652
                     9***************************9***********************......9**********555*********************** PP

                     BEEHHHHHHCCCHCCCCEEEESSSSSTSEEECSSEEEES--SHHHHSSSSTTSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEB-TGGGG CS
  RNA_pol_Rpb1_3  64 lwtgkqtfsrilpneinyerkneekdgkvlikngelikGvidkkvvgkksqgslihvlakeygiketvrfldslqrlgfkyllqsgftigigDt 157
                       t+++t++r+l+ne ++++       + +++ ++            k +++ +++ la+++   + + +ld l++ gf++++ sg+tig++D+
      KIR62968.1 653 PLTVETTLGRVLFNETLPQG-------YRFVNYEIR-----------KGQLSAIVNDLAERFPKVALAATLDGLKEAGFHWATWSGVTIGMEDV 728
                     88******************.......689999999...........89********************************************6 PP

>> RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   8.6e-14   2.2e-10       2      83 ..     758     823 ..     747     837 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 8.6e-14
                     HHHCTHTCCHHHTTHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSHHHHHHHCTSSS-HHHHHHHHTB-EEEEBTTBSS CS
  RNA_pol_Rpb1_4   2 eeaerygkledlpgksleelfeakinkilnkardkagkiaskslaasNsiliMvksGaKGsiinisqiagclGqqnvegkri 83 
                     +++er+g+l+++++k+++e+++++ + + +                +N++  M++sGa+G+ ++++qia+++G+ ++++ +i
      KIR62968.1 758 TAEERRGELIEIWTKATNEVAKEMDTALPQ----------------ENPLWKMINSGARGNLLQLRQIAAIRGLVANPKGEI 823
                     567777999999999999999955555544................3****************************9986554 PP

>> Cluap1  Clusterin-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   4.7   0.00036      0.91     148     246 ..     153     253 ..     123     275 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00036
      Cluap1 148 e..lreartkalsrqleleeiekalkeaikkvkeelektkkalenlesdeanLeakiekkkqeleraqkrLqslqsvrPafmdeyekleeeLqelyeeY 244
                 +  l e+r++  sr+ e+e+  ++l++ + ++++e +k   + +  e  e+++ +  ++ ++e++r  + L++ +++ P  +   e l +eL+  + eY
  KIR62968.1 153 NeiLAEKRQSENSRDSEIEKRAAKLEADLAELEAEGAKADVRRKVKEGGEREMRQIRDRAQREIDRLDEVLDTFRKLEPKQLVTDELLYRELRDRFGEY 251
                 1347899****************************9999999999999999999999****************************************** PP

      Cluap1 245 ve 246
                 ++
  KIR62968.1 252 FT 253
                 97 PP

>> CdvA  CdvA-like coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   3.9     0.019        50      46     114 ..     164     232 ..     148     238 .. 0.87
   2 ?    6.3   0.9     0.003       7.8      17      58 ..     742     783 ..     738     785 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.019
        CdvA  46 kkrlkeledqikslekalanlkisyasGEidEeaYksaieairellesaleekeeikklleklsklele 114
                 ++r +e+e+  ++le  la l+ + a  ++  +  +    ++r+  ++a++e++ ++++l++  kle +
  KIR62968.1 164 NSRDSEIEKRAAKLEADLAELEAEGAKADVRRKVKEGGEREMRQIRDRAQREIDRLDEVLDTFRKLEPK 232
                 567789999999999999999999999999999999999999999999999999999999999999876 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.003
        CdvA  17 kstyeeikekleealkklkekakelkeklkkrlkeledqiks 58 
                 +++++ i +++++ l++ +e++ el+e  +k ++e+ +++++
  KIR62968.1 742 EKEADRIDKQYQRGLMTAEERRGELIEIWTKATNEVAKEMDT 783
                 567899********************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       918  (0.051202); expected 358.6 (0.02)
Passed bias filter:                      679  (0.0378716); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.97u 0.27s 00:00:01.24 Elapsed: 00:00:00.45
# Mc/sec: 8650.63
//
Query:       KIR62969.1  [L=124]
Description: 30S ribosomal protein S12 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-42  143.6   2.7      2e-42  143.4   2.7    1.0  1  Ribosom_S12_S23  Ribosomal protein S12/S23
  ------ inclusion threshold ------
       0.18   12.6   0.0       0.26   12.0   0.0    1.3  1  Ribosomal_S12    Ribosomal protein S12


Domain annotation for each model (and alignments):
>> Ribosom_S12_S23  Ribosomal protein S12/S23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   2.7   2.2e-46     2e-42       1     114 []      12     123 ..      12     123 .. 0.97

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 2.2e-46
                      --------S-TSSTTSSEEEEEEEEEEEE---TT--S-EEEEEEEET.TSEEEEEEE-SSS..----TT-EEEEEE--.....BTTSTTEEEEB CS
  Ribosom_S12_S23   1 rkelrkktksdalegapqkrGvvlekvtveakkPnsAlRkvvrvrLikngkevtafipgegalnfldEhdevlvrGirrkgkavkDlpGvrykv 94 
                      r+++++ktk++al+g+pq+rGv+++++t+++kkPnsAlRkv+rv+L+ ++ evta+ipg g  ++l+Eh++vlvrG+r     vkDlpGvryk+
       KIR62969.1  12 RQAKTSKTKTPALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVKLS-SQIEVTAYIPGVG--HNLQEHSIVLVRGGR-----VKDLPGVRYKI 97 
                      67899******************************************.*************..***************.....*********** PP

                      ET....S---T..SSSTTTTT----T CS
  Ribosom_S12_S23  95 vk....vagvs..lkalskykkekpk 114
                      v+    ++gv+  ++a+s+y+++k+k
       KIR62969.1  98 VRgsldTQGVRnrKQARSRYGAKKEK 123
                      ******99999889*********986 PP

>> Ribosomal_S12  Ribosomal protein S12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.9e-05      0.26      20      82 ..      35      95 ..      21      99 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.9e-05
  Ribosomal_S12 20 llvlyvsprlpssGnrrilvaifllfnivllllvffccvlfvvlsflfiveGGGfidlpglky 82
                   + v+  +p+ p s  r+++ +   l++ + +      +   +   ++ +v GG   dlpg++y
     KIR62969.1 35 TRVYTTTPKKPNSALRKVARV--KLSSQIEVTAYIPGVGHNLQEHSIVLVRGGRVKDLPGVRY 95
                   45677899*****99998754..444444444444444467778899***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:00.52
# Mc/sec: 722.18
//
Query:       KIR62970.1  [L=156]
Description: 30S ribosomal protein S7 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-58  197.0   0.2    1.3e-58  196.9   0.2    1.0  1  Ribosomal_S7  Ribosomal protein S7p/S5e


Domain annotation for each model (and alignments):
>> Ribosomal_S7  Ribosomal protein S7p/S5e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.9   0.2   7.3e-63   1.3e-58       1     149 []       1     149 [.       1     149 [. 0.99

  Alignments for each domain:
  == domain 1  score: 196.9 bits;  conditional E-value: 7.3e-63
                   ..XSSSSCT------SSTTSBHHHHHHHHHSBTTBHHHHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHCS-SEEEEEEBSSSSBEEEEEEE-HHHHH CS
  Ribosomal_S7   1 msrrkkakkrevlpdpkynselveklinklmkdGkkslAekivygaldiieektkkdplevleeAlenvkPrvevksrrvGGatyqvpvevrpkRrq 97 
                   m+r++ a+++ + +dp+yns+lv++l+nk++ +Gk++lAe+ivy al+  +ek+++dp+ +l++A++nvkP +ev+srrvGGatyqvpvevrp+R++
    KIR62970.1   1 MPRKGPAPRKPLVADPVYNSPLVTQLVNKILLRGKRQLAERIVYAALEGCREKSGTDPVVTLKRAMDNVKPTLEVRSRRVGGATYQVPVEVRPARAT 97 
                   89*********************************************************************************************** PP

                   HHHHHHHHHHHSTSSSS-HHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTG CS
  Ribosomal_S7  98 alAlrwiieaarkrkeksmaekLaeElidAaegegaavkkreethrmAeanr 149
                   +l+lrw+++++r r+ek+m+e+L +El+dA++g gaavk+re+th+mAe+n+
    KIR62970.1  98 TLGLRWLVTYSRARREKTMVERLMNELLDASNGLGAAVKRREDTHKMAESNK 149
                   ***************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1045.35
//
Query:       KIR62971.1  [L=698]
Description: elongation factor G [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-67  226.2   0.1    3.8e-67  225.6   0.1    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    2.4e-46  156.5   0.0      5e-46  155.4   0.0    1.6  1  EFG_IV       Elongation factor G, domain IV
      1e-35  121.7   0.1    2.3e-35  120.5   0.1    1.6  1  EFG_II       Elongation Factor G, domain II
    3.7e-30  103.8   0.1    9.9e-30  102.4   0.1    1.8  1  EFG_C        Elongation factor G C-terminus
    9.1e-17   61.2   1.0    3.6e-16   59.3   1.0    2.1  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    9.7e-08   31.9   0.1      2e-07   30.9   0.1    1.5  1  RF3_C        Class II release factor RF3, C-terminal domain
     0.0012   18.9   0.1     0.0044   17.1   0.0    2.0  2  MMR_HSR1     50S ribosome-binding GTPase
     0.0026   17.1   0.0     0.0058   16.0   0.0    1.5  1  AIG1         AIG1 family
     0.0062   16.1   0.4      0.015   14.9   0.4    1.5  1  ATP-grasp_4  ATP-grasp domain
  ------ inclusion threshold ------
      0.016   15.1   0.1      0.049   13.5   0.1    1.9  1  GTP_EFTU_D4  Elongation factor Tu domain 4
       0.13   12.8   0.0       0.91   10.0   0.0    2.3  2  AvrPtoB_bdg  Avirulence AvrPtoB, BAK1-binding domain


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.6   0.1   2.3e-70   3.8e-67       2     194 .]       9     282 ..       8     282 .. 0.93

  Alignments for each domain:
  == domain 1  score: 225.6 bits;  conditional E-value: 2.3e-70
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEE CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlv 100
                 ++rnigi++h+D+GKtT+t+r+l++tg++ k ge++e+++v+D++++E+ergiTi+saa+++e  +k ++i++iDtPGHvdF+ ev+r+lrvlDgav v
  KIR62971.1   9 NVRNIGIMAHIDAGKTTTTERILFYTGITYKIGEVHEGAAVMDWMEQEQERGITITSAATKCE--WKGHTIQIIDTPGHVDFTVEVERSLRVLDGAVAV 105
                 79*************************************************************..********************************** PP

                 EETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH.............................................. CS
    GTP_EFTU 101 vdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk.............................................. 153
                  d v Gvepqte+v+r+a k++vp+++f+NK+Dr++a++ ++v+++ ++l+++                                              
  KIR62971.1 106 YDGVAGVEPQTENVWRQADKYNVPRMCFVNKLDRTGADFFRCVQMMIDRLNATplvlqipiglegdhigvvdligmraltwrgetqkgedyaieeipad 204
                 **************************************************888********************************************** PP

                 ..............................HHHHHHHHHTTT.................TTEEEEEEBTTTTBTHHHHHHHHHHHSHH CS
    GTP_EFTU 154 ..............................eeklekygekge.................kevpvvfgSalkgegvktllealvellps 194
                                               e          e                 k  pv++gSa+k++gv+++l+a+v++lps
  KIR62971.1 205 laddaaqwreklmetladvddavmekylegE----------EisveeikaairratiasKANPVLCGSAFKNKGVQPMLDAVVDFLPS 282
                 ********99999999999855555555550..........35555555555566666689***********************9996 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.4   0.0   3.1e-49     5e-46       1     120 [.     479     601 ..     479     602 .. 0.98

  Alignments for each domain:
  == domain 1  score: 155.4 bits;  conditional E-value: 3.1e-49
                 TCCESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTT...TTSSEEEEE--STCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE-- CS
      EFG_IV   1 pqVayrEtirkpvkereeklkkqsggdgqyakvileiePle...egsgnefvdetkggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgslh 96 
                 pqVayrEtir++v+++e ++kkq+gg+gqya+vi+++ePl+      ++ef ++++gg++p+e+i++v++G q+a++ G+lag+p+++vk tL+dg++h
  KIR62971.1 479 PQVAYRETIRRKVEKVEFTHKKQTGGSGQYARVIISLEPLPldnDSPTYEFANAVTGGRIPREFIPSVDAGAQDAMQYGILAGFPLVGVKLTLVDGQYH 577
                 8****************************************9988889*************************************************** PP

                 TTTC-HHHHHHHHCHHHHHHHHCC CS
      EFG_IV  97 evdsseaafkpaarralkeallkA 120
                 evdsse+afk+a+++alkea++kA
  KIR62971.1 578 EVDSSEMAFKIAGSMALKEAARKA 601
                 ***********************9 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   0.1   1.4e-38   2.3e-35       1      75 []     404     478 ..     404     478 .. 0.99

  Alignments for each domain:
  == domain 1  score: 120.5 bits;  conditional E-value: 1.4e-38
      EFG_II   1 fPePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykvevelgk 75 
                 fPePvi++aiepk+kad++kls+a++rl+eEDpt+rv+ d+eT++t++sGmGelHl+i+v+r++re++ve+++gk
  KIR62971.1 404 FPEPVIEVAIEPKTKADQEKLSTAIQRLAEEDPTFRVKLDDETGQTVISGMGELHLDILVDRMRREFNVEANIGK 478
                 8**********************************************************************9985 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   0.1   6.1e-33   9.9e-30       2      88 ..     605     690 ..     604     691 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.4 bits;  conditional E-value: 6.1e-33
                 EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHHHHH CS
       EFG_C   2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdklde 88 
                 llEP+++ve+++pee++g+vi+dl+srrG+i+ me++ sg+ i++a +Pl+e++g+  +Lrs T+G++s+sm+f++Y+e+p ++++e
  KIR62971.1 605 LLEPVMSVEVTTPEENMGDVIGDLNSRRGIIQAMEER-SGTRIVRALVPLSEMFGYVGDLRSKTQGRASYSMQFDSYAEIPASVAKE 690
                 8************************************.*******************************************999876 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   1.0   2.2e-19   3.6e-16       1      74 []     324     391 ..     324     391 .. 0.97

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 2.2e-19
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  G ++++rvysG+++ G +v++  +++++k   +ri++++ +h++++e++  a+aG+i+a+ gl+++  +Gdtl+
   KIR62971.1 324 GKLTYVRVYSGVVESGSQVVN--STKDRK---ERIGKIYQMHANKREERGSAQAGDIIAVQGLKQT-TTGDTLC 391
                  7899*****************..999999...*********************************7.******8 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.1   1.2e-10     2e-07      15      95 ..     413     493 ..     403     511 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.2e-10
                 EEESSGGGHHHHHHHHHHHHHCTSSEEEEET.TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--EEEEEE-SSH. CS
       RF3_C  15 vrlkdplkrkqlrkgleqLaeEGavqvfkeeeageelilgaVGqLQfeVveeRlknEYgvevrleslpyslarwvesedek 95 
                 ++ k    + +l+++++ LaeE  +   k ++++ +++++ +G+L ++++ +R+++E++ve+++ + ++ +   ++++ ek
  KIR62971.1 413 IEPKTKADQEKLSTAIQRLAEEDPTFRVKLDDETGQTVISGMGELHLDILVDRMRREFNVEANIGKPQVAYRETIRRKVEK 493
                 56677788899*************9999999999*******************************9999999888765553 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.7e-06    0.0044       2     113 ..      13     135 ..      12     136 .. 0.70
   2 ?   -2.1   0.0       2.4   3.9e+03      41      57 ..     166     191 ..     153     247 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.7e-06
                 EEEEESTTSSHHHHHHHHH..............T....STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt..............g....ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlill 81 
                 ++i+ +  +GK+t   +++              g    +  + +++ g T++    + ++kg+ i+++DtpG ++       ++ ++++  +  d ++ 
  KIR62971.1  13 IGIMAHIDAGKTTTTERILfytgitykigevheGaavmDWMEQEQERGITITSAATKCEWKGHTIQIIDTPGHVD-------FTVEVERSLRvLDGAVA 104
                 66777778999999999986666666665444313222245778888*************************655.......44444444442699999 PP

                 EEETTTTCSHHHHHHHHHHHHHTTSEEEEEEE CS
    MMR_HSR1  82 vvdaseeklkpldeeleelleeakkplilvln 113
                 v d   ++++p+ e++ +  ++ + p +  +n
  KIR62971.1 105 VYDGV-AGVEPQTENVWRQADKYNVPRMCFVN 135
                 99955.66888888887777666666666666 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.4
                 EEETTEEEEEEECGGC.........S CS
    MMR_HSR1  41 vklkgkeielvDtpGl.........i 57 
                 + l+g++i +vD+ G+          
  KIR62971.1 166 IGLEGDHIGVVDLIGMraltwrgetQ 191
                 44567788888988843322222220 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.5e-06    0.0058      31      67 ..      57      93 ..      18     103 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.5e-06
                TTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHH CS
        AIG1 31 saqsvtkkcqkksrtwdgkkinViDTPglfdlsvsad 67
                +++++t ++   + +w+g++i++iDTPg +d  v+ +
  KIR62971.1 57 QERGITITSAATKCEWKGHTIQIIDTPGHVDFTVEVE 93
                6789999*********************999988766 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.4     9e-06     0.015      31      69 ..     202     240 ..     191     248 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9e-06
  ATP-grasp_4  31 vaaieeeleqakeeykeevveeesflvEeyieGeEfavd 69 
                   a++ ++++q++e+ +e+  + +++++E+y+eGeE++v+
   KIR62971.1 202 PADLADDAAQWREKLMETLADVDDAVMEKYLEGEEISVE 240
                  57889999******************************8 PP

>> GTP_EFTU_D4  Elongation factor Tu domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1     3e-05     0.049      23      69 ..     329     379 ..     303     390 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3e-05
                  EEEEEEEEETT-EEEETT...E.EEEEEEEEEETTE.EESEEETT-EEEEE CS
  GTP_EFTU_D4  23 vevlgGvikpgvkliked...GrevGeilqiqdkgk.kleeakaGqevais 69 
                  v+v +Gv+++g ++++++    +++G+i q++ +++ +   a+aG+ +a+ 
   KIR62971.1 329 VRVYSGVVESGSQVVNSTkdrKERIGKIYQMHANKReERGSAQAGDIIAVQ 379
                  99************9864111568*******987651567999***99985 PP

>> AvrPtoB_bdg  Avirulence AvrPtoB, BAK1-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.6   2.6e+03      54      72 ..       8      26 ..       3      34 .. 0.78
   2 ?   10.0   0.0   0.00056      0.91      18      69 ..     225     277 ..     212     288 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.6
                 HHHHCTT--S----SS-BS CS
  AvrPtoB_bdg 54 salqnvginpsidlgeslv 72
                 + ++n+gi   id g++  
   KIR62971.1  8 ANVRNIGIMAHIDAGKTTT 26
                 56789********998765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00056
                  HHHHHH.HHCTT--HHHHHHHHHHHHHH-----HHHHHHHHCTT--S----SS CS
  AvrPtoB_bdg  18 daalrg.lvqqgvnlehlrtalerhvmqrlpipldigsalqnvginpsidlge 69 
                  da +   l  + + +e +++a+ r  +     p+  gsa++n g++p +d   
   KIR62971.1 225 DAVMEKyLEGEEISVEEIKAAIRRATIASKANPVLCGSAFKNKGVQPMLDAVV 277
                  555543144567899********************************999655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 4422.99
//
Query:       KIR62972.1  [L=397]
Description: elongation factor Tu [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-56  189.5   0.0    6.2e-56  189.0   0.0    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    4.2e-33  114.0   0.2    8.2e-33  113.1   0.2    1.5  1  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
      3e-16   59.6   4.2    6.4e-16   58.5   3.3    2.0  2  GTP_EFTU_D2  Elongation factor Tu domain 2
    2.3e-05   24.5   0.1    5.4e-05   23.3   0.0    1.6  2  MMR_HSR1     50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.0   0.0   1.4e-59   6.2e-56       1     193 [.      10     203 ..      10     204 .. 0.93

  Alignments for each domain:
  == domain 1  score: 189.0 bits;  conditional E-value: 1.4e-59
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEE CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavl 99 
                 k+++nig+igh+DhGKtTLt ++++ +++   + +  +    +D+++eE++rgiTi++a+++++  t+ ++++++D+PGH+d++k++i+g++++Dga+l
  KIR62972.1  10 KPHVNIGTIGHIDHGKTTLTAAITKVLHDQFPDLNPYTPFDEIDKAPEEKARGITISIAHVEYQ--TEARHYAHVDCPGHADYIKNMITGAAQMDGAIL 106
                 579**************************9996555544566**********************..********************************* PP

                 EEETTTBSTHHHHHHHHHHHHTTTE.EEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTB........THHHHHHHH CS
    GTP_EFTU 100 vvdaveGvepqteevlrlalkegvp.iivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkge........gvktlleal 188
                 vv+a++G++pqt+e++ la+++gvp i+v++NK D++ +ael e+ve   ++l      l+++++ g+ + pvv +Salk+         ++ +l++a+
  KIR62972.1 107 VVAATDGPMPQTREHVLLARQVGVPyIVVALNKSDMVdDAELLELVELEVREL------LSSQEYPGD-DLPVVQVSALKALegdpvwteKLLELMNAV 198
                 *************************************99***********9**......999999996.************977777777666999999 PP

                 HHHSH CS
    GTP_EFTU 189 vellp 193
                 ++ +p
  KIR62972.1 199 DTAIP 203
                 99887 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   0.2   1.8e-36   8.2e-33       2     111 ..     302     395 ..     301     396 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.1 bits;  conditional E-value: 1.8e-36
                  -EEECCEEEEEEESSS.....SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEEE CS
  GTP_EFTU_D3   2 ikphtkfeAqvyileke...rhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFai 96 
                   +pht+feA vyil+ke   rhtp++++Yrp++y+rt+dvtg vv+L       +e++     e+v+pGdn++++v+li+pia+e++       +Fai
   KIR62972.1 302 TTPHTEFEATVYILSKEeggRHTPFFQNYRPQFYFRTTDVTG-VVTL-------PEGT-----EMVMPGDNTTMSVKLIQPIAMEENL------KFAI 380
                  589***************************************.****.......9999.....*************************......**** PP

                  ECTTCEEEEEEEEEE CS
  GTP_EFTU_D3  97 ReggrTvaaGvvtei 111
                  ReggrTv+aG vt+i
   KIR62972.1 381 REGGRTVGAGRVTKI 395
                  **************9 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   3.3   1.4e-19   6.4e-16       1      73 [.     227     296 ..     227     297 .. 0.97
   2 ?   -1.8   0.0      0.98   4.4e+03      36      58 ..     342     364 ..     311     382 .. 0.61

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 1.4e-19
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  Gtv++grv++G+l +++ v+++g  +++ k   t+++++e+f++ +d a+ag+n+G+++++ + ed +++G+++
   KIR62972.1 227 GTVVTGRVERGVLLPNEDVEVVGiREKGFK---TKVTAIEMFRKTLDDARAGENVGLLLRGTKRED-VERGMVV 296
                  9**********************9999888...*********************************.*****97 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.98
                  EEEEEETEEESEEETTSEEEEEE CS
  GTP_EFTU_D2  36 ssletfhededeavaganaGviv 58 
                  +++ t  e  + +++g+n    v
   KIR62972.1 342 TGVVTLPEGTEMVMPGDNTTMSV 364
                  44444444444444444444333 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.2e-08   5.4e-05       2     113 ..      15     138 ..      14     139 .. 0.79
   2 ?   -3.0   0.0       1.7   7.5e+03      29      55 ..     298     343 ..     289     359 .. 0.54

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.2e-08
                 EEEEESTTSSHHHHHHHHHT..................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg..................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillv 82 
                 ++ +G+   GK+tL  a+t+                  +ka  ++  g T+ i + +++++ +++  vD+pG  +       +++ +    ++d ++lv
  KIR62972.1  15 IGTIGHIDHGKTTLTAAITKvlhdqfpdlnpytpfdeiDKAPEEKARGITISIAHVEYQTEARHYAHVDCPGHAD------YIKNMITGAAQMDGAILV 107
                 889****************888888888888888875559999****************989**********333......4666666677899*9999 PP

                 EETTTTCSHHHHHHHHHHHHHTTSEEEE.EEE CS
    MMR_HSR1  83 vdaseeklkpldeeleelleeakkplil.vln 113
                 v a+ ++  p+ +e   l ++ + p+i+ +ln
  KIR62972.1 108 VAAT-DGPMPQTREHVLLARQVGVPYIVvALN 138
                 9977.545566566555556678887763555 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.7
                 STTSSSSEEEEEEE......ETTEE................EEEEECGG CS
    MMR_HSR1  29 kpgtTrdinegrvk......lkgke................ielvDtpG 55 
                 kpgtT+  +e++ +      +   e                ++ +D+ G
  KIR62972.1 298 KPGTTTPHTEFEATvyilskE---EggrhtpffqnyrpqfyFRTTDVTG 343
                 677777666665543332210...1223334444444444455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2692.39
//
Query:       KIR62973.1  [L=102]
Description: 30S ribosomal protein S10 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-37  126.6   0.1    3.8e-37  126.4   0.1    1.0  1  Ribosomal_S10  Ribosomal protein S10p/S20e
  ------ inclusion threshold ------
       0.13   13.1   0.0       0.65   10.9   0.0    1.8  2  PriA_C         Primosomal protein N C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_S10  Ribosomal protein S10p/S20e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   0.1   4.3e-41   3.8e-37       1      98 []       7     101 ..       7     101 .. 0.99

  Alignments for each domain:
  == domain 1  score: 126.4 bits;  conditional E-value: 4.3e-41
                    EEEEEESSHHHHHHHHHHHHHHTTSSS-EE---EEEEEEEEEEEEE--SS--S--EEEEEEEEEEEEEEEE.E-HHHHHHHS-...S---SS-EEE CS
  Ribosomal_S10   1 rirlkSydsklLekavkkivraakelgikvkgpvplPtkrkrvtvlksphvdkksreqfeirthkRlidisdatketidtllkllqlnlpegVsve 96 
                    rirlk+yd+++++++++kiv+++ ++g++v gpvplPt+  r++v++sph +k+sre+fe+rthkRlidi d+t++t+d l++   l+lp+gV++e
     KIR62973.1   7 RIRLKAYDHEVVDSSARKIVETVTRTGAQVAGPVPLPTEINRFCVIRSPHKYKDSREHFEMRTHKRLIDIIDPTPKTVDSLMR---LDLPAGVDIE 99 
                    8**********************************************************************************...********** PP

                    EE CS
  Ribosomal_S10  97 vk 98 
                    +k
     KIR62973.1 100 IK 101
                    96 PP

>> PriA_C  Primosomal protein N C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.2e-05      0.65       6      49 ..       6      45 ..       3      49 .. 0.89
   2 ?    0.2   0.0      0.16   1.4e+03      35      48 ..      71      84 ..      51      89 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.2e-05
      PriA_C  6 alirvsgkdeekveeaaeelaellkealkleeveilgpapapia 49
                ++ir+++ d e v + a++++e++++    ++ ++ gp+p p +
  KIR62973.1  6 IRIRLKAYDHEVVDSSARKIVETVTR----TGAQVAGPVPLPTE 45
                89*********************999....4568******9965 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.16
      PriA_C 35 leeveilgpapapi 48
                +  ++i++p+p  +
  KIR62973.1 71 KRLIDIIDPTPKTV 84
                23467999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 830.36
//
Query:       KIR62974.1  [L=221]
Description: 50S ribosomal protein L3 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-17   63.4   7.5    5.3e-15   55.3   2.5    2.9  3  Ribosomal_L3  Ribosomal protein L3


Domain annotation for each model (and alignments):
>> Ribosomal_L3  Ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.016   2.9e+02      71      90 ..      22      41 ..       3      74 .. 0.69
   2 !   55.3   2.5   2.9e-19   5.3e-15     209     290 ..     101     185 ..      81     188 .. 0.85
   3 !   10.5   0.0   1.2e-05      0.22     321     351 ..     186     216 ..     182     221 .] 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.016
                  EEEEEEEEEEC--EEEEEEE CS
  Ribosomal_L3 71 evveavtvvetppmvivgvv 90
                  + v++vtvv+  p v+ +v+
    KIR62974.1 22 NKVVPVTVVQAGPCVVSQVR 41
                  34566777777777776665 PP

  == domain 2  score: 55.3 bits;  conditional E-value: 2.9e-19
                   CCCS-TTSEEEEEEEE---EEE-HHHHCT----STTTSSS..SSS-S-SS-S.SSSS--TTS--SEEESCCEEEEEEEEEEEEET CS
  Ribosomal_L3 209 aavFrqgeliDvigvtkGkGfeGvvkRWgvkklprkthrg..lRkvaaigaw.dparVsstvaraGqkGyhhRtelnkkiyrigk 290
                    + F  g  iDv+g+tkGkG+ G++kR g+++l++ ++ +  +R +++iga   p+rV  ++++aG++G ++ t  n+ +  +++
    KIR62974.1 101 VEQFPVGVTIDVTGKTKGKGYAGPMKRHGFHGLRASHGVErkHRSPGSIGACaTPGRVFKGTRMAGRMGGVRYTVQNLTVQAVDT 185
                   45799999****************************985445********96379*******************99999988887 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 1.2e-05
                   TSCEEEEES--SSSTTEEEEEEE-SSGGGSC CS
  Ribosomal_L3 321 kndfilvkGsvpGpkkrlvklrkslltqtsr 351
                   +n+++lv+G++pGpk  lv +r +  ++ ++
    KIR62974.1 186 ENNLLLVRGAIPGPKGALVLVRTAAKVKAKK 216
                   799********************99888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1706.73
//
Query:       KIR62975.1  [L=216]
Description: 50S ribosomal protein L4 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.2e-63  211.4   0.6    1.1e-62  211.1   0.6    1.0  1  Ribosomal_L4  Ribosomal protein L4/L1 family
     0.0089   15.5   0.2      0.037   13.5   0.1    1.9  2  DUF2336       Uncharacterised protein conserved in bacteria (


Domain annotation for each model (and alignments):
>> Ribosomal_L4  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.1   0.6   1.3e-66   1.1e-62       1     189 [.      17     203 ..      17     205 .. 0.98

  Alignments for each domain:
  == domain 1  score: 211.1 bits;  conditional E-value: 1.3e-66
                   EEE-HHHHSS---HHHHHHHHHHHHHSS-EE------TTTSS---S-SS-SSSSSS---S-TTSTTSTT---SS---S.EEHHHHHHHHHHHHHHHH CS
  Ribosomal_L4   1 veLspkvFaapirrdlihravvaylanrrqgtastkarsevsgsgrklwkQKGtGrARvgsirspiargGgvahgpkperdystklnkKvrrlAlrs 97 
                   veL+ +vF+++++  l+h++vva+la++rqgt++tk+r+ev+g+g+k++kQKGtGrAR+gsir+p++ gGgv+hgp p rdys++ +kK++ +Alr 
    KIR62975.1  17 VELPSDVFDVQANIALMHQVVVAQLAAARQGTHKTKTRGEVAGGGKKPYKQKGTGRARQGSIRAPQFAGGGVVHGPVP-RDYSQRTPKKMKAAALRG 112
                   79***************************************************************************9.****************** PP

                   HHHHHHHTT-EEEES--.-.-SS--HHHHHHHHHHTT-TTSSEEEEESSSSCHHHHHHTT-TTEEEEESTT--CHHHHHSSEEEEEHHHHHHH CS
  Ribosomal_L4  98 aLsakakqglllvvdnl.epleesktkelvellkklglksksvLivvsekdenlvlaarnlpgvevieveslnvydllkadkvvitksavekl 189
                   aLs +a++g+++vv+ + +  e+++tk + + l kl    ++vL+v+s++de  + + rn p+v++ie+ +ln yd+l ad+vv+tk+a++++
    KIR62975.1 113 ALSDRARAGQVHVVEAFvS-GEKPSTKAALATLAKLTE-ARRVLVVLSSTDELNWVSLRNEPRVHLIEAGQLNTYDVLVADDVVFTKDALDEF 203
                   ***************9956.99***************9.9**************************************************986 PP

>> DUF2336  Uncharacterised protein conserved in bacteria (DUF2336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   4.1e-06     0.037     144     192 ..     103     151 ..      88     164 .. 0.83
   2 ?   -0.8   0.0     0.097   8.7e+02     168     193 ..     186     211 ..     165     213 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.1e-06
     DUF2336 144 deeeakrlvahlrrngrltealllralkagdlaffaaaLaelsglpaer 192
                 ++ +a++l  +l +++r+ + ++++a ++g+ + + aaLa l++l ++r
  KIR62975.1 103 KKMKAAALRGALSDRARAGQVHVVEAFVSGEKPSTKAALATLAKLTEAR 151
                 4455677777**********************************98876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.097
     DUF2336 168 ralkagdlaffaaaLaelsglpaerv 193
                 + l+a d+ f+  aL e  g+pae+ 
  KIR62975.1 186 DVLVADDVVFTKDALDEFLGVPAETT 211
                 45789999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1742.20
//
Query:       KIR62976.1  [L=100]
Description: 50S ribosomal protein L23 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-30  105.2   0.5    1.9e-30  105.0   0.5    1.0  1  Ribosomal_L23  Ribosomal protein L23
  ------ inclusion threshold ------
      0.056   13.5   0.0      0.056   13.5   0.0    1.1  1  DUF2396        Protein of unknown function (DUF2396)


Domain annotation for each model (and alignments):
>> Ribosomal_L23  Ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   0.5   2.2e-34   1.9e-30       1      85 [.       9      93 ..       9      94 .. 0.97

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 2.2e-34
                   SSEEEE--SHHHHHHHTTE.EEEEE-SS-THHHHHHHHHHHHT--EEEEEEEEE--EBESSSSSEEBE--EEEEEEEESSS-SSS CS
  Ribosomal_L23  1 dvilkPvitEkstklaeknkyvFeVakdanKleikkaveklFgVkVekVntlnvkgkkkrvgrkvgrrksyKkaiVtLkegekid 85
                   dvi++Pv++Eks++  ++n y+F V++danK+eik a++++F+V+V  Vntln++gk+kr+++  g+rk++K+aiV+L++g++i+
     KIR62976.1  9 DVIIAPVVSEKSYSELNRNWYTFLVHPDANKTEIKIAIQQIFNVRVLTVNTLNREGKRKRTKTGFGQRKATKRAIVKLADGDRIE 93
                   79***********999999*****************************************9888******************996 PP

>> DUF2396  Protein of unknown function (DUF2396)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.3e-06     0.056      35      81 ..       5      51 ..       3      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.3e-06
     DUF2396 35 adpeteelvhlqsgrkwrlwegkwyrqhthpdgirfeihealdrlyt 81
                adp+   +  + s++++   + +wy    hpd+ + ei+ a++++++
  KIR62976.1  5 ADPRDVIIAPVVSEKSYSELNRNWYTFLVHPDANKTEIKIAIQQIFN 51
                5666666777889***************************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 732.82
//
Query:       KIR62977.1  [L=279]
Description: 50S ribosomal protein L2 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-53  178.0   3.9    7.6e-53  178.0   3.9    1.6  2  Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
    1.1e-33  115.0   1.0    2.1e-33  114.1   1.0    1.5  1  Ribosomal_L2    Ribosomal Proteins L2, RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.3       1.6   1.4e+04     107     114 ..      53      60 ..      48      63 .. 0.73
   2 !  178.0   3.9   8.4e-57   7.6e-53       1     126 []     126     251 ..     126     251 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.6
                     SS--SSSS CS
  Ribosomal_L2_C 107 phGGGeGk 114
                      hGGG+ +
      KIR62977.1  53 HHGGGHKR 60 
                     59999855 PP

  == domain 2  score: 178.0 bits;  conditional E-value: 8.4e-57
                     SSSS-EBSSSS-TTB-BBSE-SSTTS--SSS-SSSB-EEBB-B.SSEEEEEETTS-EEEEETTSBEBES-BS-TTCTT----STTHHHHTTBS-- CS
  Ribosomal_L2_C   1 kvGnvlplknipeGtivhnielkpgkggklarsaGtyaqvvakegkkvtvklpSgevrkvssecrAtiGvvsngehkekklgkAgrkrwlgrrpk 95 
                     k+Gn lpl+nip+Gt++hn+el+pg g+klarsaG   q++++eg ++t+++pSge+r+v+ +crA +G+++n+++++ ++gkAgr rw+g+rp+
      KIR62977.1 126 KPGNNLPLRNIPVGTTIHNVELRPGGGAKLARSAGVGIQLLGREGAYATLRMPSGEIRRVDVRCRASVGEIGNADQSNINWGKAGRMRWKGKRPT 220
                     68********************************************************************************************* PP

                     --SSSS-TTTSSS--SSSS--SSSSTEETTC CS
  Ribosomal_L2_C  96 vrGvamnpvdHphGGGeGktksrkapvspwg 126
                     vrGvamnpvdHphGGGeGkt++ ++pv p+g
      KIR62977.1 221 VRGVAMNPVDHPHGGGEGKTSGGRHPVNPQG 251
                     **********************77***9987 PP

>> Ribosomal_L2  Ribosomal Proteins L2, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.1   1.0   2.4e-37   2.1e-33       1      77 []      42     119 ..      42     119 .. 0.99

  Alignments for each domain:
  == domain 1  score: 114.1 bits;  conditional E-value: 2.4e-37
                   TB-TT--BSSTT--------EE-B--S-.--SS--EEEEEEE--TT-SS-EEEEEETTTEEEEEE--SS--SS-EE-- CS
  Ribosomal_L2   1 GrnnsgritvrhrggGhkkkyrlidfkr.nkekvkgkVveieyDpgRsApiAlvkyedgekryiiapeglkvGdtvvs 77 
                   Grn +grit+rh+ggGhk++yrlidfkr +k++v++kV++ieyDp+R+A+iAl++y dgekryiiap+ lk Gd v+s
    KIR62977.1  42 GRNAHGRITARHHGGGHKRQYRLIDFKRvDKDGVPAKVAHIEYDPNRTARIALLHYADGEKRYIIAPKDLKQGDAVES 119
                   9*************************************************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       200  (0.0111551); expected 358.6 (0.02)
Passed bias filter:                      166  (0.00925874); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 2396.43
//
Query:       KIR62978.1  [L=93]
Description: 30S ribosomal protein S19 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-36  123.7   0.3    2.3e-36  123.5   0.3    1.0  1  Ribosomal_S19  Ribosomal protein S19


Domain annotation for each model (and alignments):
>> Ribosomal_S19  Ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.3   1.3e-40   2.3e-36       1      81 []       3      83 ..       3      83 .. 0.99

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 1.3e-40
                   .HHHSSTTCCCHHHHHHHHHHTS-----EEES-TT-B--GGGTT-EEEEE-SSSEEEEE--CCCTTSBCGGGT-SS----S CS
  Ribosomal_S19  1 rslkkgpfvqesllkkvrkakaekkkevikthsRdstIlPemvgltvgVynGktfvpveikeemvGhkLgEFspTrkpvkh 81
                   rslkkgpfv+++llkkv+ ++++++k+vikt+sR+stI+Pem+g+t++V++G+++vpv ++e+mvGhkLgEF++Tr++++h
     KIR62978.1  3 RSLKKGPFVDDHLLKKVETQNDKGSKNVIKTWSRRSTIIPEMLGHTIAVHDGRKHVPVFVTEAMVGHKLGEFALTRTFKGH 83
                   89*******************999*******************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 837.77
//
Query:       KIR62979.1  [L=144]
Description: 50S ribosomal protein L22 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-34  118.3   0.2      2e-34  117.9   0.2    1.2  1  Ribosomal_L22  Ribosomal protein L22p/L17e


Domain annotation for each model (and alignments):
>> Ribosomal_L22  Ribosomal protein L22p/L17e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   0.2   1.1e-38     2e-34       1     102 [.       7     109 ..       7     110 .. 0.96

  Alignments for each domain:
  == domain 1  score: 117.9 bits;  conditional E-value: 1.1e-38
                    EEEEEESS-HHHHHHHHHHHTTSBHHHHHHHHHT-SSTTHHHHHHHHHHHHHHHH..HT.-GGGEEEEEEEEEEEEEEEEEEEESTTEEEEEEEEE CS
  Ribosomal_L22   1 akgsnlrvsfkklrevarlIrgmkveeAlkyLkfskkkaakfvlklLknaeanaelkgl.dvdslvIeeiqvnkgpklkrrtyrArGrinpirksp 95 
                    a ++++r+s+ k+r+v++l+rg +++eAl++L+f+++ a+++v+k+L +a+anae+++  d+d l ++e++v++gp++kr+++rA+Gr+++irk++
     KIR62979.1   7 AVARHVRISPMKARRVVNLVRGLPAKEALTVLQFAPQAASEQVYKVLASAIANAENNERlDPDALLVSEAFVDEGPTMKRFRPRAQGRAYRIRKRT 102
                    56899*************************************************976657************************************ PP

                    EEEEEEE CS
  Ribosomal_L22  96 chievvl 102
                    chi+v +
     KIR62979.1 103 CHITVAV 109
                    ****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1122.73
//
Query:       KIR62980.1  [L=284]
Description: 30S ribosomal protein S3 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-35  119.7   0.7    1.4e-34  118.5   0.3    1.9  2  Ribosomal_S3_C  Ribosomal protein S3, C-terminal domain
    6.6e-20   70.7   3.8    1.1e-19   70.1   3.8    1.4  1  KH_2            KH domain
    0.00094   19.0   0.6      0.002   17.9   0.6    1.6  1  KH_4            KH domain


Domain annotation for each model (and alignments):
>> Ribosomal_S3_C  Ribosomal protein S3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.1   6.4e+03       7      22 ..      34      49 ..      30      54 .. 0.73
   2 !  118.5   0.3   2.3e-38   1.4e-34       1      83 []     119     202 ..     119     202 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
                    TT--HHHHHHHHHHHH CS
  Ribosomal_S3_C  7 krvsfRramkkairra 22
                    + v++Rr+m k ++ra
      KIR62980.1 34 EDVKIRRMMSKGLERA 49
                    5678888888877765 PP

  == domain 2  score: 118.5 bits;  conditional E-value: 2.3e-38
                     HHHHHHTT--HHHHHHHHHHHHHHC.C-SEEEEEEEC-SS.TTT--EEEEEEC----TCHHHH-EEEEEEEEETTEEEEEEEEE CS
  Ribosomal_S3_C   1 iaeqlekrvsfRramkkairramka.gakGikiqvsGrLggaeiarsekykeGrvplhtlradidyavaeaktkyGiiGvkVwI 83 
                     +aeql+ rvsfRram+ka+++amk+  +kGi++qvsGrLggae++r+e y+eGrvplhtlra+i+y++ ea+t+ G iGvkVwI
      KIR62980.1 119 VAEQLSSRVSFRRAMRKAMQSAMKNpVCKGIRVQVSGRLGGAEMSRTEFYREGRVPLHTLRANIEYGFFEARTTFGRIGVKVWI 202
                     699********************99679*******************************************************9 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   3.8   1.8e-23   1.1e-19       1      77 [.      37     109 ..      37     110 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 1.8e-23
                 HHHHHHHHHTECETEEEEEEECCSCEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEEEEEEETTTG CS
        KH_2   1 eipeslaveikkagvskveIertanrviiviresqpgivIGkgGsnikkigkelrkdieklegkkVklnivkVkkpe 77 
                 +i+    + ++ ag+skv+Iert++rv++ i++++pgivIG++G++ ++i+ el+k +    gk+V+lni++Vk+pe
  KIR62980.1  37 KIRRMMSKGLERAGISKVDIERTRDRVRVDIHTARPGIVIGRKGAEADRIRGELEKLT----GKQVQLNIIEVKNPE 109
                 688999999*************************************************....*************98 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.6   3.4e-07     0.002      19      55 ..      53      87 ..      37      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.4e-07
        KH_4 19 evteeeeeeeveielnvegedlGrvIGkrGrtldAlq 55
                +v++  e++++++++++++   G+vIG++G  +d ++
  KIR62980.1 53 KVDI--ERTRDRVRVDIHTARPGIVIGRKGAEADRIR 87
                4444..58899*******************9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2140.98
//
Query:       KIR62981.1  [L=141]
Description: 50S ribosomal protein L16 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-45  153.2   0.2      4e-45  153.0   0.2    1.0  1  Ribosomal_L16  Ribosomal protein L16p/L10e


Domain annotation for each model (and alignments):
>> Ribosomal_L16  Ribosomal protein L16p/L10e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.0   0.2   2.3e-49     4e-45       6     132 .]      11     134 ..       6     134 .. 0.95

  Alignments for each domain:
  == domain 1  score: 153.0 bits;  conditional E-value: 2.3e-49
                    XBSSSXXSSTSXXXSXXXXXESXEEEEESSXEEEEHHHHHHHHHHHCTCCCCTSXCEEXXSXXXXEEEEE-SS-TTTSSSSXEEEEEEEEEXSSCE CS
  Ribosomal_L16   6 yrKsrkryirgvstkgtklefgdygLvalekgqltaealeaariainrylkkkrgkklwirvfphhpvtkkagedRmgkGkGkpegwvarvkigqi 101
                    +rK ++   +g+s+ g+++ fg++g++ale++++t++++e+aria++r++k  rg+k+wi +fp++ +tkk++e+Rmg+GkG+pe wva+vk+g+i
     KIR62981.1  11 FRKPHHPDRHGASKGGNRVVFGEFGIQALEPAYVTNRQIESARIAMTRHIK--RGGKVWISIFPDQALTKKPAETRMGSGKGSPEWWVANVKPGRI 104
                    7888885558999**************************************..******************************************* PP

                    EEEETTXXXSHHHHHHHHHHHHTSSSXEEEE CS
  Ribosomal_L16 102 ifeikagvneeiakealrraasKlpiktkiv 132
                    +fe+ +  ne+ia+ea+rra +Klp+k++iv
     KIR62981.1 105 LFEM-SFPNEQIAREAMRRAIHKLPMKCRIV 134
                    ****.745*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1066.34
//
Query:       KIR62982.1  [L=78]
Description: 50S ribosomal protein L29 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-23   82.7   6.0    1.5e-23   82.5   6.0    1.1  1  Ribosomal_L29  Ribosomal L29 protein
    0.00012   21.9   1.9    0.00013   21.7   1.9    1.1  1  CCDC85         CCDC85 family
  ------ inclusion threshold ------
        3.9    7.6   7.9        7.2    6.7   0.6    2.1  2  DUF1192        Protein of unknown function (DUF1192)


Domain annotation for each model (and alignments):
>> Ribosomal_L29  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   6.0   2.5e-27   1.5e-23       1      57 []       8      64 ..       8      64 .. 0.99

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 2.5e-27
                   HHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHTSSS-CHHHHHHHHHHHHHHHHHHHH CS
  Ribosomal_L29  1 kelrelsdeeLkeklkelkkeLfnLrfqkatgqlenpsrirkvRkdIARikTvlrer 57
                   +elrels+eeL  kl e+k+eLfnLr+q+atgql+n  r+  +R++IARi+T++rer
     KIR62982.1  8 SELRELSEEELVTKLREAKAELFNLRVQAATGQLDNNRRLQVIRREIARIYTIMRER 64
                   79******************************************************8 PP

>> CCDC85  CCDC85 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   1.9   2.2e-08   0.00013       8      61 ..       6      59 ..       2      66 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.2e-08
      CCDC85  8 sDeellklskeelvrrLRraeaekvsllvergrlikevnrrLqqhLleiRelke 61
                   el++ls eelv +LR+a+ae  +l v+ +    + nrrLq+   ei  +  
  KIR62982.1  6 KASELRELSEEELVTKLREAKAELFNLRVQAATGQLDNNRRLQVIRREIARIYT 59
                5689****************************************9999977655 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   1.3    0.0032        19      15      40 ..       8      33 ..       3      44 .. 0.82
   2 ?    6.7   0.6    0.0012       7.2      27      53 ..      45      71 ..      39      73 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0032
     DUF1192 15 qDLslLSveELeerIalLeaEIaRle 40
                 +L  LS eEL +   + +aE   l+
  KIR62982.1  8 SELRELSEEELVTKLREAKAELFNLR 33
                6899*************999986555 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0012
     DUF1192 27 erIalLeaEIaRleaaiakkkasraAA 53
                 r +  + EIaR+ + +++++ + +AA
  KIR62982.1 45 RRLQVIRREIARIYTIMRERELGLSAA 71
                6888999**********9999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.97
# Mc/sec: 242.98
//
Query:       KIR62983.1  [L=93]
Description: 30S ribosomal protein S17 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-31  108.1   0.5    2.2e-31  107.7   0.5    1.1  1  Ribosomal_S17  Ribosomal protein S17


Domain annotation for each model (and alignments):
>> Ribosomal_S17  Ribosomal protein S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.5   1.2e-35   2.2e-31       1      68 []      20      87 ..      20      87 .. 0.99

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 1.2e-35
                   EEEEE--STTEEEEEEEEEEEETTTTEEEEEEEEEEEE-TTTS--TT-EEEEEEECECSSSEEEEEEE CS
  Ribosomal_S17  1 GvVvsdkmdkTvvVrverlvkhpkykkyvkrrkkylahdennsvkvGDiVrieecrPlSktkrfvvve 68
                   G Vvsdkm+kTvvV+ve +vkh +y+k+++r++k+++hde+n + +GD+V i+e+rPlS tkr+++ve
     KIR62983.1 20 GLVVSDKMEKTVVVEVEDRVKHALYGKIMRRTSKLKVHDEQNAAGIGDRVLIMETRPLSATKRWRLVE 87
                   89****************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 637.67
//
Query:       KIR62984.1  [L=122]
Description: 50S ribosomal protein L14 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-54  183.0   0.2      2e-54  182.8   0.2    1.0  1  Ribosomal_L14  Ribosomal protein L14p/L23e


Domain annotation for each model (and alignments):
>> Ribosomal_L14  Ribosomal protein L14p/L23e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.8   0.2   1.1e-58     2e-54       1     122 []       1     122 []       1     122 [] 0.99

  Alignments for each domain:
  == domain 1  score: 182.8 bits;  conditional E-value: 1.1e-58
                    ..CSS-EEE--SSSSBSEEEEEEETT-.---EE-SSSEEEEEESSS-T...TTSSCEEEEEEEE-SS-EE-TTS-EEEESS-EEEEB-TTS-BSS- CS
  Ribosomal_L14   1 miqlktrlkvaDNsgakevecikvlggkkrkaasvGdiivvsvkkakpkgkvkkgdvvkavvvrtkkevrrkdGsvirfddnaaVllnkkgeplGt 96 
                    miq+++rl+vaDN+ga+e+ ci+vlgg+ r++as+Gd+iv++vk+a+p + vkkgdvvkavvvrt+ke+rr+dGs+irfd+naaV++++ g+p+Gt
     KIR62984.1   1 MIQQESRLRVADNTGAREILCIRVLGGSGRRYASIGDVIVATVKDAIPGAGVKKGDVVKAVVVRTAKEKRRPDGSYIRFDENAAVIIKDGGDPRGT 96 
                    9*********************************************************************************************** PP

                    .B-SBEEHHHHHH.-HHHHHTBSBE. CS
  Ribosomal_L14  97 rifgpvarelrekkflkivslApevl 122
                    rifgpv relr+k+f+ki+slApevl
     KIR62984.1  97 RIFGPVGRELRDKRFMKIISLAPEVL 122
                    ************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 885.77
//
Query:       KIR62985.1  [L=189]
Description: 50S ribosomal protein L5 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-37  127.9   0.0    1.9e-37  127.3   0.0    1.3  1  Ribosomal_L5_C  ribosomal L5P family C-terminus
    8.9e-28   96.4   0.3    1.4e-27   95.8   0.3    1.3  1  Ribosomal_L5    Ribosomal protein L5


Domain annotation for each model (and alignments):
>> Ribosomal_L5_C  ribosomal L5P family C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   0.0   2.2e-41   1.9e-37       1      94 []      93     186 ..      93     186 .. 0.99

  Alignments for each domain:
  == domain 1  score: 127.3 bits;  conditional E-value: 2.2e-41
  Ribosomal_L5_C   1 piGvkvtLrgekmyefldkllevvlprlrdFkGiskssfdgrGnvsfGikeqiifpeieydkdkgifGmditivttaktdeearallkelgipf 94 
                     piG+kvtLrg++m+efld+ll+++lpr+rdF+G+  ++ dg+Gn++fG++eq++f ei+ dk+++ +Gmdit+vtta+td+e rallk lg+pf
      KIR62985.1  93 PIGAKVTLRGDRMWEFLDRLLSIALPRIRDFRGLDGRKLDGHGNYTFGLTEQSVFHEIDQDKIDRQRGMDITVVTTATTDDEGRALLKLLGFPF 186
                     8********************************************************************************************9 PP

>> Ribosomal_L5  Ribosomal protein L5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.3   1.6e-31   1.4e-27       1      57 []      33      89 ..      33      89 .. 1.00

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 1.6e-31
                  SCTTS-EEEEEEEEEE-SSSSSCHHHHHCCHHHHCCCHSS--EECC--TTCTTTCSC CS
  Ribosomal_L5  1 NvMqvPrleKivinmgvGeagedkkllekaakeLaeItGQkPvvtkakksianFkiR 57
                  N+MqvPrl Kiv+nmgvGea++d+kl+++a+++La+ItGQkP v++a ksia+Fk+R
    KIR62985.1 33 NPMQVPRLVKIVVNMGVGEAARDAKLIDGAVRDLATITGQKPQVRRATKSIAQFKLR 89
                  9*******************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1451.67
//
Query:       KIR62986.1  [L=61]
Description: 30S ribosomal protein S14 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-25   86.3   3.5    9.4e-25   86.1   3.5    1.1  1  Ribosomal_S14  Ribosomal protein S14p/S29e
  ------ inclusion threshold ------
      0.045   13.9   0.0      0.061   13.5   0.0    1.3  1  HTH_17         Helix-turn-helix domain
        0.2   11.7   0.1       0.24   11.5   0.0    1.3  1  AAA_lid_5      Midasin AAA lid domain


Domain annotation for each model (and alignments):
>> Ribosomal_S14  Ribosomal protein S14p/S29e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   3.5   1.6e-28   9.4e-25       1      54 []       9      60 ..       9      60 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 1.6e-28
                   S------SS..CTTT---SSS--SSSEE-GGG-EHHHHHHHTTT...TT-EE-- CS
  Ribosomal_S14  1 klaklprnssptrirnrCrvtGrprGvirkfgLsRicfRelAlkgelpGvkKaS 54
                   k a+ p++s  +r ++rC+ +Grp++v+rkfgL+R+c+Re+A++gelpGv KaS
     KIR62986.1  9 KAAAKPKFS--VRAYTRCQRCGRPKAVYRKFGLCRVCIREMAHRGELPGVSKAS 60
                   56899****..******************************************9 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     1e-05     0.061       9      30 ..      35      56 ..      29      61 .] 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1e-05
      HTH_17  9 elLgvsrstvyrlirrgelpaa 30
                + +g++r  ++++++rgelp +
  KIR62986.1 35 RKFGLCRVCIREMAHRGELPGV 56
                5689***************998 PP

>> AAA_lid_5  Midasin AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.1e-05      0.24      36      61 ..       3      27 ..       1      46 [. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.1e-05
   AAA_lid_5 36 erkeltdgagqkphfSlRtlsraLsy 61
                + k l   a  kp+fS+R+++r+ ++
  KIR62986.1  3 K-KALILKAAAKPKFSVRAYTRCQRC 27
                4.566667889************766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 428.46
//
Query:       KIR62987.1  [L=135]
Description: 30S ribosomal protein S8 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-49  165.2   0.0    6.9e-49  165.0   0.0    1.0  1  Ribosomal_S8  Ribosomal protein S8


Domain annotation for each model (and alignments):
>> Ribosomal_S8  Ribosomal protein S8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.0   0.0   3.8e-53   6.9e-49       1     127 []       5     135 .]       5     135 .] 0.95

  Alignments for each domain:
  == domain 1  score: 165.0 bits;  conditional E-value: 3.8e-53
                   -HHHHHHHHHHHHHHTT-SEEEEE--HHHHHHHHHHHHCTSEEEEEEE.CCC...CCCEEEEE-BSSS-SBSSSEEEE-SBTTC--EE-CCC---CG CS
  Ribosomal_S8   1 DpiadmltrirNaekakkeevevpasklkeeilkvLkeeGyikdfeve.eek...kkkikielkynkkkksvikklkrvskpgrrvYakvkelpkvl 93 
                   Dpiadmltr+rNa++a +++v++p+sk+k++i++vL +eGyi+ ++ve  e+    k + +elky +++++ + ++krvskpg+rvYak++ lp+vl
    KIR62987.1   5 DPIADMLTRLRNANQAYHDRVTMPYSKIKANIAEVLMSEGYIATWSVEePEEgavGKRLVVELKYGQNRERSLAGIKRVSKPGLRVYAKSDGLPRVL 101
                   9**********************************************63333444444*************************************** PP

                   GGTSEEEEEETTEEEEHHHHHHCT--EEEEEEEE CS
  Ribosomal_S8  94 nglGiaivsTskGvmtdkeArkkkvGGevlayvw 127
                   +glG+ai+sTs+G++td++Ark++vGGevla+vw
    KIR62987.1 102 GGLGVAIISTSQGLLTDRQARKRSVGGEVLAFVW 135
                   ********************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 987.49
//
Query:       KIR62988.1  [L=180]
Description: 50S ribosomal protein L6 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-41  140.9   1.3    4.3e-20   72.2   0.1    2.1  2  Ribosomal_L6  Ribosomal protein L6
  ------ inclusion threshold ------
      0.036   14.1   0.0       0.13   12.3   0.0    1.9  2  TubC_N        TubC N-terminal docking domain


Domain annotation for each model (and alignments):
>> Ribosomal_L6  Ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.2   8.8e-23   7.9e-19       1      76 []      11      83 ..      11      83 .. 0.97
   2 !   72.2   0.1   4.8e-24   4.3e-20       2      75 ..      92     165 ..      91     166 .. 0.98

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 8.8e-23
                  CSTTEEEEEETTTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHHHHHHHHHHHHHHHHHHHHTC CS
  Ribosomal_L6  1 iPvgvrvsikggqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgidkekvAligtvrslinnmikGVteg 76
                  +P+gv+++i+g q v+v+Gpkgelt  + e +t e   e+++++v ++++ +k+k  l+g++r+li+nmi+GVteg
    KIR62988.1 11 VPAGVDITIDG-QAVKVKGPKGELTHVLAEPITAER-AEDGQLQVNRPNDERKAKE-LHGLSRTLIANMIVGVTEG 83
                  7*********8.***********************5.5******************.*****************98 PP

  == domain 2  score: 72.2 bits;  conditional E-value: 4.8e-24
                   STTEEEEEETTTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHH....HHHHHHHHHHHHHHHHHHT CS
  Ribosomal_L6   2 PvgvrvsikggqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgidkekv....AligtvrslinnmikGVte 75 
                   + g+rv+ kg+ l+  lG+++++ ++ p+g+t++v+    k+tv  v gidk+ v    A+i+++r+++++++kGV++
    KIR62988.1  92 GTGYRVTAKGKDLEFALGFSHPVLVPAPDGITFTVE----KPTVFHVAGIDKQLVgevaANIRKIRPPEPYKGKGVKY 165
                   67**********************************....************************************99 PP

>> TubC_N  TubC N-terminal docking domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.4e-05      0.13      11      45 ..      13      47 ..      12      47 .. 0.93
   2 ?    0.2   0.0     0.087   7.8e+02      17      29 ..      46      58 ..      45      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.4e-05
      TubC_N 11 lgIkLwleggrLrfrApkgaltpelraklkerKae 45
                +g+ + ++g+  +++ pkg lt  l++ + + +ae
  KIR62988.1 13 AGVDITIDGQAVKVKGPKGELTHVLAEPITAERAE 47
                59999*********************999998886 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.087
      TubC_N 17 leggrLrfrApkg 29
                +e+g+L+++ p++
  KIR62988.1 46 AEDGQLQVNRPND 58
                69*****998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1269.61
//
Query:       KIR62989.1  [L=204]
Description: 30S ribosomal protein S5 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-29  101.6   0.5    1.8e-29  101.0   0.5    1.3  1  Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
    1.3e-27   95.5   3.2    2.2e-27   94.8   3.2    1.3  1  Ribosomal_S5    Ribosomal protein S5, N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.5     2e-33   1.8e-29       1      72 []     112     183 ..     112     183 .. 0.97

  Alignments for each domain:
  == domain 1  score: 101.0 bits;  conditional E-value: 2e-33
                     EEEETTEEEEEEE--TT--EES-HHHHHHHHHHT--SEE---BS-SSHHHHHHHHHHHHHHTTTT-.-GGGG CS
  Ribosomal_S5_C   1 tgkfgavkvllkpaprGtGiiaggavravlelaGikDvlakslgsrnpinvvkAtfeALkklrspeevaalR 72 
                     tg+  a+ vllkpa++GtG+iagg+vravle+aGi+Dvl+kslgs+npin+v+At+ ALk l+spe vaa+R
      KIR62989.1 112 TGEAAAGVVLLKPASAGTGVIAGGPVRAVLECAGIHDVLSKSLGSSNPINIVHATVAALKGLESPEAVAARR 183
                     578899***************************************************************998 PP

>> Ribosomal_S5  Ribosomal protein S5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   3.2   2.5e-31   2.2e-27       3      65 .]      39     101 ..      38     101 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.8 bits;  conditional E-value: 2.5e-31
                   EEEEEEEEEEEEETTEEEEEEEEEEEEEETTTEEEEEEEEESSHHHHHHHHHHHHHHTEEE-- CS
  Ribosomal_S5   3 ekvlkikrvqkvtkgGrrtsfsalvvvGdgnGlvGlGvgkakevatAirkAiekAkknlvpvp 65 
                   e+v++i+rv+kv+kgGrr+sf+alv+vGdg+G vG+G+gkakev+ Ai k++e Akk++++vp
    KIR62989.1  39 ERVVAINRVAKVVKGGRRFSFTALVIVGDGDGTVGVGYGKAKEVPAAIAKGVEEAKKHFFKVP 101
                   89***********************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1663.01
//
Query:       KIR62990.1  [L=60]
Description: 50S ribosomal protein L30 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-19   70.2   0.3    1.1e-19   70.0   0.3    1.0  1  Ribosomal_L30  Ribosomal protein L30p/L7e


Domain annotation for each model (and alignments):
>> Ribosomal_L30  Ribosomal protein L30p/L7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.3   6.4e-24   1.1e-19       1      51 []       4      54 ..       4      54 .. 0.99

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 6.4e-24
                   EEEEE-S-STTS-HHHHHHHHHTT-SSTTEEEE--SSHHHHHHHHHCCCGE CS
  Ribosomal_L30  1 lfVtrirsiigvppkvrktLqlLgLrkingtvvklntpsirGmLkkVkhlV 51
                   l+Vt+ rs ig + ++r  L++LgL++in++vvk++ p+irGm+  V+hlV
     KIR62990.1  4 LKVTQLRSEIGAKRNQRESLRSLGLKRINDVVVKEDRPEIRGMIFAVNHLV 54
                   79************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 473.15
//
Query:       KIR62991.1  [L=147]
Description: 50S ribosomal protein L15 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-31  109.6   3.7      2e-31  109.3   3.7    1.1  1  Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27
  ------ inclusion threshold ------
        0.2   11.1   1.8       0.27   10.6   0.0    2.1  3  Ribosomal_L18   Ribosomal protein 60S L18 and 50S L18e


Domain annotation for each model (and alignments):
>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   3.7   2.3e-35     2e-31       1     127 [.      28     145 ..      28     146 .. 0.94

  Alignments for each domain:
  == domain 1  score: 109.3 bits;  conditional E-value: 2.3e-35
                     GGGGTSSTTTTTTTTT-S--......S--..........---GGG..---EEEEHHHHHHTTTTGTTS------EEEGGGTTTTSSS....SEEE CS
  Ribosomal_L27A   1 kGktgGrGhkGqkkrsgvkkkpgfeGGqmplyrrlpk.rGfknskfkkeykvvnlkdLdelideerleladeaeeidleelaeaglikkkdgvKv 94 
                     kGkt+GrG kG+k+r++++  ++feGGqmp+++rlpk +Gfkn kfk   +vvnl++L el++++ +        +  +el+eag ++k + vKv
      KIR62991.1  28 KGKTAGRGTKGSKARKNIS--AAFEGGQMPIHMRLPKvKGFKN-KFKVVFQVVNLDKLAELFPNGGQ--------VGPQELVEAGAVRKGHPVKV 111
                     6**************8655..68**************99**98.89*************99999865........99****************** PP

                     E--S---.-.-EEEESEE-HHHHHHHHHTT-EEE CS
  Ribosomal_L27A  95 lgkgeltkk.lkvkaskfSkkAkekIeaaGGkve 127
                     lg+g+l+   l+v a++fS++AkekI aaGG+v+
      KIR62991.1 112 LGTGDLNGVsLQVSAQAFSASAKEKITAAGGSVT 145
                     ******9955**********************96 PP

>> Ribosomal_L18  Ribosomal protein 60S L18 and 50S L18e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3      0.26   2.3e+03     165     183 ..      30      40 ..       5      48 .. 0.44
   2 ?   -2.0   0.0      0.22     2e+03     119     133 ..      76      90 ..      73      92 .. 0.84
   3 ?   10.6   0.0     3e-05      0.27      97     119 ..     122     144 ..     117     147 .] 0.91

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.26
  Ribosomal_L18 165 yvrskgrkfekargrrksr 183
                     +         +rg + s+
     KIR62991.1  30 KT--------AGRGTKGSK 40 
                    22........233333333 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.22
  Ribosomal_L18 119 iltlDqLalraPtGk 133
                    ++ lD+La   P+G 
     KIR62991.1  76 VVNLDKLAELFPNGG 90 
                    7889****9999986 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 3e-05
  Ribosomal_L18  97 lsvaALrftetararilkaGGei 119
                    l+v A  f+++a+++i++aGG +
     KIR62991.1 122 LQVSAQAFSASAKEKITAAGGSV 144
                    899******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1210.77
//
Query:       KIR62992.1  [L=442]
Description: preprotein translocase subunit SecY [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     9e-116  386.4  13.0   1.1e-115  386.2  13.0    1.1  1  SecY      SecY translocase


Domain annotation for each model (and alignments):
>> SecY  SecY translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  386.2  13.0  5.9e-120  1.1e-115       1     306 []      74     425 ..      74     425 .. 0.94

  Alignments for each domain:
  == domain 1  score: 386.2 bits;  conditional E-value: 5.9e-120
                 BTTSSTCHHHHHHHHHHHHHHHHSSSSSSTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC........................HH.HHHHHHH CS
        SecY   1 sifaLGImPyitasIilqLltvvipkleelkkegeegrkkinqitryltvvlalvqalgialslg........................lalllivlql 75 
                 s+faLGImPyitasIilqLltvvip+le+l+keg++g++ki+q+trylt++l ++q+ ++++ ++                        l+l+++v+++
  KIR62992.1  74 SVFALGIMPYITASIILQLLTVVIPRLEQLRKEGQAGQAKITQYTRYLTLGLGILQSSAFVALARsgqlfnnqcdqfpivpkgtgipdwLTLTILVMTM 172
                 89*******************************************************99885545899********************9888999**** PP

                 HHHHHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHCCHSS-HHHHSS..THHHHHHHHHHHHHHHHHCHHHHBEEEECBBBSTT........S.S-EEE CS
        SecY  76 tagtvllmwLgEqitekGiGnGisllifagivarlpkalsglielalegilallllllvtllvillvvyveeaerripvqyakr..grk..ggqssylP 170
                 tagt ++mwLgE+it++G+GnG+s+lif++i+arlp++ +++ ++  +g+++++l+l+++l+vi++v ++e+a+rripvqyakr  gr+  gg+s+y+P
  KIR62992.1 173 TAGTGVVMWLGELITDRGVGNGMSVLIFTSIAARLPSEGWRIKTQ--QGWWKFFLVLALVLVVITAVTFIEQAQRRIPVQYAKRmiGRRmyGGTSTYIP 269
                 ************************************999985433..49*************************************9999999****** PP

                 EETTCCCSCHHHHHHHHHHHHHCCCCS.............TCCCS.....THHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHCCHHTBSSSCTTTTCHH CS
        SecY 171 lklnyagviPiIfassllalpstiaqfl............lalls.....psvlyvvlyvlliifFayfyteitfnpkevaenlkksggfipgirpgke 252
                 lk+n+agviP+If ssll+lp+  +qf+            +   +     +s+l++++y+lliifF+yfy++itfnp+eva+n+kk+ggf+pgirpgk+
  KIR62992.1 270 LKVNQAGVIPVIFGSSLLYLPQLALQFFdqtnpgktqawiQ---NnvvdpSSPLHIAIYFLLIIFFTYFYVSITFNPTEVADNMKKYGGFVPGIRPGKP 365
                 ****************************9999999854441...2455567789********************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT.....S..TT.TTHHHHHHHHHHHHHHH CS
        SecY 253 takyLekvlsritliGalflaliavlpdllga.....sl.igafggtslLivVgvaletv 306
                 ta+yL+ +lsritl+Gal+l+++++lp+++       ++ ++ fggt++Li+Vgv letv
  KIR62992.1 366 TADYLDFILSRITLPGALYLGIVSILPNFFFIwlnseQFqNFPFGGTAVLIMVGVGLETV 425
                 *******************************999986335579**************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3294.78
//
Query:       KIR62993.1  [L=217]
Description: adenylate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-55  186.0   0.0    4.8e-55  185.8   0.0    1.0  1  ADK              Adenylate kinase
    1.8e-26   93.2   0.0    4.4e-26   91.9   0.0    1.6  2  AAA_17           AAA domain
    2.9e-12   46.4   1.8    4.6e-12   45.7   1.8    1.3  1  ADK_lid          Adenylate kinase, active site lid
    0.00012   22.6   0.0    0.00022   21.8   0.0    1.4  1  AAA_18           AAA domain
    0.00089   19.4   0.0     0.0017   18.5   0.0    1.5  1  AAA_33           AAA domain
     0.0047   16.7   0.0      0.007   16.1   0.0    1.3  1  Cytidylate_kin   Cytidylate kinase
  ------ inclusion threshold ------
      0.014   15.8   0.0      0.022   15.2   0.0    1.3  1  AAA              ATPase family associated with various cellul
      0.058   13.4   0.3      0.096   12.7   0.3    1.3  1  DUF1451          Zinc-ribbon containing domain
      0.068   12.9   0.0       0.13   11.9   0.0    1.4  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
       0.15   11.7   0.0       0.75    9.4   0.0    2.1  3  Thymidylate_kin  Thymidylate kinase
       0.17   11.5   0.6       0.37   10.4   0.6    1.6  1  TF_Zn_Ribbon     TFIIB zinc-binding
       0.23   11.4   0.9       0.39   10.7   0.9    1.3  1  OrfB_Zn_ribbon   Putative transposase DNA-binding domain


Domain annotation for each model (and alignments):
>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.8   0.0   3.2e-58   4.8e-55       1     150 [.       5     190 ..       5     191 .. 0.99

  Alignments for each domain:
  == domain 1  score: 185.8 bits;  conditional E-value: 3.2e-58
                 EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHCT-HHHHHHHHHHHTTSS--HHHHHHHHHHHHHCHGTTTEEEEESB-SSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK   1 llGaPgaGKGtqaeklvkkyglahlstGdllRaevksgtelGkeakevmdkgelvpdevvvklvkeelekedkkkgfllDGfPRtveqaealeelleee 99 
                 l+G+PgaGKGtqae ++ +++++++stGd++Ra+v++gt+lG eak++md+g+lvpdev++++v+++l+++d+++gfllDGfPRt++qa al++ll++ 
  KIR62993.1   5 LVGPPGAGKGTQAEFIAAHLSVPKISTGDIFRANVSQGTPLGVEAKRYMDAGKLVPDEVTINMVRDRLAEPDASEGFLLDGFPRTTPQAAALDKLLADL 103
                 79************************************************************************************************* PP

                 TSEESEEEEEE--HHHHHHHHHT....................................GSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK 100 kvkldlvleldvpeevlveRltg....................................DneetvkkRletykkqtkplidyykkkg 150
                 ++ ldlvlel v+++ +++Rl+g                                    D++et+++Rl++y ++t+pl+dyy  +g
  KIR62993.1 104 GTALDLVLELVVDDDEVIRRLSGrrtcrgcgkiwhvefdattrdgicdrcgaelfqrddDKPETIAARLREYADKTAPLVDYYGAQG 190
                 ***********************************************************************************8876 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.0   2.9e-29   4.4e-26       1     124 [.       6     129 ..       6     135 .. 0.95
   2 ?   -2.1   0.0       3.2   4.7e+03     126     135 ..     159     168 ..     142     176 .. 0.75

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 2.9e-29
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTS..HSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrggl..akardemrklpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldglpkevl 97 
                 +G+PG+GKgtq+e ++ ++ ++ +s+Gd++r+++++g    ++a+ +m+ ++l++++ +  ++ +++ae ++++g+l+dg+pr+  qa +ld+l ++  
  KIR62993.1   6 VGPPGAGKGTQAEFIAAHLSVPKISTGDIFRANVSQGTPlgVEAKRYMDAGKLVPDEVTINMVRDRLAEPDASEGFLLDGFPRTTPQAAALDKLLADLG 104
                 7**********************************99744699*******************************************************9 PP

                 HHH..SEEEEEE--HHHHHHHHHHHTT CS
      AAA_17  98 eelkpdaiilleadpeeilerrlkdrt 124
                 + l  d+++ l +d++e+++r+  +rt
  KIR62993.1 105 TAL--DLVLELVVDDDEVIRRLSGRRT 129
                 999..99**************999987 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.2
                 T-TS-SHHHH CS
      AAA_17 126 grdddneesi 135
                 +rddd  e+i
  KIR62993.1 159 QRDDDKPETI 168
                 6777777776 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   1.8   3.1e-15   4.6e-12       1      36 []     127     162 ..     127     162 .. 0.99

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 3.1e-15
                 EEE-TTT--EEETTTB--SSTTB-TTT--.-B--GG CS
     ADK_lid   1 RrvCpkCGrsYhvvfnpPkveglCDkCGepLvqRsD 36 
                 Rr+C+ CG+++hv+f     +g+CD CG +L+qR+D
  KIR62993.1 127 RRTCRGCGKIWHVEFDATTRDGICDRCGAELFQRDD 162
                 9**********************************9 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.5e-07   0.00022       2     115 ..       4     129 ..       3     141 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.5e-07
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.....gvnlrdvakenglllevdpe.aldeskrldedkldklldaleenss.........aleegknlvidghlae 85 
                 +l G+pG+GK t a+ ++ +l +     g++ r +++++ +l  + +  +   +++ de   + + d l e ++          ++ ++   +d +la+
  KIR62993.1   4 VLVGPPGAGKGTQAEFIAAHLSVpkistGDIFRANVSQGTPLGVEAKRyMDAGKLVPDEVTINMVRDRLAEPDAsegflldgfPRTTPQAAALDKLLAD 102
                 689*****************98899***77777777776555555555433333444444444444444443332222222222233455566666666 PP

      AAA_18  86 leseaakdikkvvLtaspeelleRlekRgy 115
                 l  + +   +   L ++++e ++Rl+ R++
  KIR62993.1 103 LGTALDL--V-LELVVDDDEVIRRLSGRRT 129
                 6666444..3.88***************86 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.1e-06    0.0017       3     119 ..       4     128 ..       3     145 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.1e-06
      AAA_33   3 llvGlpGsGKstlaerllkklgavllssdtlrr.rlfg...tdqqsktdytrvldr.....lyqilnelarkalsagrnvildatnlsrrerarflkla 92 
                 +lvG+pG+GK t ae ++++l +  +s+ +++r ++      +++ k +y ++ +      ++++++++++    a  +++ld   ++  + a+++kl+
  KIR62993.1   4 VLVGPPGAGKGTQAEFIAAHLSVPKISTGDIFRaNVSQgtpLGVEAK-RYMDAGKLvpdevTINMVRDRLA-EPDASEGFLLDGFPRTTPQAAALDKLL 100
                 79****************99998888776666625544655333333.45555544322345555555553.2556688999999999999******** PP

      AAA_33  93 rrlgvp.vrivvvetdeetlkeRlakRa 119
                  +lg + ++++ + +d+++  +Rl  R 
  KIR62993.1 101 ADLGTAlDLVLELVVDDDEVIRRLSGRR 128
                 *99987468899************9997 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.7e-06     0.007       4      35 ..       6      37 ..       3      56 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.7e-06
                    E-STTSSHHHHHHHHHHHHT-EEEEHHHHHHH CS
  Cytidylate_kin  4 DGPagsGKssvaralaeklglkyldtgalYRa 35
                     GP g+GK++ a  +a +l++  ++tg ++Ra
      KIR62993.1  6 VGPPGAGKGTQAEFIAAHLSVPKISTGDIFRA 37
                    59*****************************8 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   1.5e-05     0.022       2      27 ..       4      29 ..       3      55 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-05
                EEESSTTSSHHHHHHHHHHHHTHEEE CS
         AAA  2 llyGppGtGKTllakavakelgvefl 27
                +l+GppG GK + a+ +a +l+v+ +
  KIR62993.1  4 VLVGPPGAGKGTQAEFIAAHLSVPKI 29
                79******************987622 PP

>> DUF1451  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   6.4e-05     0.096     112     146 ..     125     161 ..     114     162 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.4e-05
     DUF1451 112 lGtlvCekCgk..elalkkteeippCpkCgateFrRe 146
                  G+ +C+ Cgk  +++++ t++   C +Cga+ F+R 
  KIR62993.1 125 SGRRTCRGCGKiwHVEFDATTRDGICDRCGAELFQRD 161
                 58889*****844566777888888***********5 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     9e-05      0.13      36      60 ..       3      27 ..       2      39 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9e-05
      RuvB_N 36 vllyGpPGlGkttlakiiakelgvk 60
                ++l+GpPG Gk t a+ ia+ l v 
  KIR62993.1  3 LVLVGPPGAGKGTQAEFIAAHLSVP 27
                5799****************99885 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0005      0.75       3      53 ..       7      59 ..       6      75 .. 0.78
   2 ?   -2.0   0.0       1.6   2.4e+03     119     140 ..     108     129 ..      92     134 .. 0.80
   3 ?   -2.0   0.0       1.6   2.4e+03     165     181 ..     188     204 ..     155     206 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0005
                     ESTTSSHHHHHHHHHHHHHHTTE....EEEESSSTTSHHHHHHHHHHHTCS--- CS
  Thymidylate_kin  3 GlDGaGKttqaellkerlkeegik...vvltrepggteiGekirelllkeeele 53
                     G  GaGK tqae+++++l+  +i+   +++   ++gt++G  +++++  + +l 
       KIR62993.1  7 GPPGAGKGTQAEFIAAHLSVPKIStgdIFRANVSQGTPLGVEAKRYMD-AGKLV 59
                     5669**************999888777788888899999999888877.55554 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.6
                      SEEEEEESSHHHHHTSCCTTSS CS
  Thymidylate_kin 119 dltflldvdpevalkRlakrde 140
                      dl++ l vd ++ ++Rl+ r++
       KIR62993.1 108 DLVLELVVDDDEVIRRLSGRRT 129
                      8899999999999999999876 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.6
                      TTSTEEEEETTS-HHHH CS
  Thymidylate_kin 165 ederiliidasksieev 181
                      ++++++ ida+ ++e+v
       KIR62993.1 188 AQGKLVGIDATGPVEDV 204
                      46777778888888876 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6   0.00025      0.37       2      29 ..     129     157 ..     128     166 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00025
                   EETTTTC.EECHEETSTTCEEESSSSBEE CS
  TF_Zn_Ribbon   2 kCPnCgs.tnlveDpergelvCtdCGlVl 29 
                   +C  Cg   ++++D+ + + +C +CG+ l
    KIR62993.1 129 TCRGCGKiWHVEFDATTRDGICDRCGAEL 157
                   7999**95559***************865 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.9   0.00026      0.39      30      59 ..     129     161 ..     121     169 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00026
  OrfB_Zn_ribbon  30 tCseCgsknke..alsgrtfkCpnCgfe.adrD 59 
                     tC  Cg++     + ++r   C++Cg+e ++rD
      KIR62993.1 129 TCRGCGKIWHVefDATTRDGICDRCGAElFQRD 161
                     8******9888899**************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1459.50
//
Query:       KIR62994.1  [L=283]
Description: methionine aminopeptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-42  144.5   0.9    4.1e-42  144.2   0.9    1.0  1  Peptidase_M24  Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   0.9   2.3e-46   4.1e-42       1     205 [.      17     248 ..      17     252 .. 0.86

  Alignments for each domain:
  == domain 1  score: 144.2 bits;  conditional E-value: 2.3e-46
                    HHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT.....TCEESSSSEEEEGGGGGSTTTBCS.SSB--TTEEEEEEEEEEETTEEE CS
  Peptidase_M24   1 elirkaariasaaleavleaikpgvterelaaeieattlkrhg.....arglafppivasgenaavlhytpn.drvlkegdlvlidagaeydgyas 90 
                    e++r+a+ ++++al+++ ea+ pgv++++l+a++e t +++ g     +++++fp +++s++n++v+h++p+  +vl+egdl+ id+ga++dg+++
     KIR62994.1  17 EKMRAAGLVVAEALRRMREAVAPGVSTADLDAIAEST-IREAGavpsfKGYHGFPASICSSVNEQVVHAIPSpAQVLREGDLISIDCGAVLDGWHG 111
                    68*********************************99.777778***999*********************87999******************** PP

                    EEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSB.....HHHHHHHHHHHHHHTT.BCCGBSSCSEEEESSSSSEEEEEESS..STTCSSB- CS
  Peptidase_M24  91 DitrTvlvGkftpeqrelyeavleaqeaaikavkpGvt.....lseidaaarevlesag.lakffphglGHgvGlevhdegpsvsr..esndgrkl 178
                    D + Tv vG+ +p+  ++ +++++a+ a+i+a+  G+      l++i++a+++ ++++g +   +  + GHg+G e+h++ p+v +  ++++g +l
     KIR62994.1 112 DAAITVGVGEVDPALLKMAAVAEDAMWAGIAAAARGAAngrgrLTDISHAVENAVRRGGrY-GIVDGYGGHGIGTEMHQD-PHVLNhgRPGKGPRL 205
                    **************999*************9988775334445*************98645.55677889********99.**866466669**** PP

                    -TTBEEEEEEEEE.....EET....TT.......E.EEEEBEEE CS
  Peptidase_M24 179 eeGmvftiEpgiy.....fap....ge.......g.gvriedtv 205
                      Gm ++iEp+i      +      g+       + +v++e+ +
     KIR62994.1 206 VHGMALAIEPMITmgsprT-VeladGWtvvtrdgSmAVHVEHSM 248
                    **********888543331.034445566666664488888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1855.06
//
Query:       KIR62995.1  [L=73]
Description: translation initiation factor IF-1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-29  100.9   0.1    2.7e-29  100.8   0.1    1.0  1  eIF-1a    Translation initiation factor 1A / IF-1


Domain annotation for each model (and alignments):
>> eIF-1a  Translation initiation factor 1A / IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.1   1.5e-33   2.7e-29       1      64 []       8      71 ..       8      71 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 1.5e-33
                EEEEEEEEEEETTTEEEEEE.SSSSBEEEEE-HHHH.CT----TT-EEEEEE-TT-TTEEEEES- CS
      eIF-1a  1 gevigkViealgnnlfrVelpdngkevlaeipgkfR.nkiwikrGdyVlVelspydltkGrIvyr 64
                +e++g+Vie l+n++frVel+ ng++vla+i+gk+R ++i+i++ d+V+Velspydlt+GrIvyr
  KIR62995.1  8 IEIEGRVIEPLPNAMFRVELA-NGHKVLAHISGKMRqHYIRILPEDRVVVELSPYDLTRGRIVYR 71
                589*****************8.9*****************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 502.11
//
Query:       KIR62996.1  [L=37]
Description: 50S ribosomal protein L36 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-18   64.7  12.2    6.9e-18   64.6  12.2    1.0  1  Ribosomal_L36  Ribosomal protein L36


Domain annotation for each model (and alignments):
>> Ribosomal_L36  Ribosomal protein L36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6  12.2   3.9e-22   6.9e-18       1      38 []       1      37 []       1      37 [] 0.99

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 3.9e-22
  Ribosomal_L36  1 MKVrssvkkmcegCkvvrRkgrvyviCkknPrhKqRQG 38
                   MKV+ svk++c++C+v+rR+grv+viC ++PrhKqRQG
     KIR62996.1  1 MKVKPSVKRICNKCRVIRRHGRVMVIC-SDPRHKQRQG 37
                   ***************************.*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 289.73
//
Query:       KIR62997.1  [L=126]
Description: 30S ribosomal protein S13 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.4e-34  116.6   3.7    4.5e-32  111.1   3.7    2.0  1  Ribosomal_S13  Ribosomal protein S13/S18
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.019   14.9   0.0    1.2  1  H2TH           Formamidopyrimidine-DNA glycosylase H2TH domai


Domain annotation for each model (and alignments):
>> Ribosomal_S13  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   3.7     5e-36   4.5e-32       1     128 []       3     109 ..       3     109 .. 0.99

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 5e-36
  Ribosomal_S13   1 RilgtdidgkkkveialtaikGiGrrkakiilkkadvdedkrigelteeeiekieeivenkaqykipnwinrqkdikdGkdshvvendlrrklred 96 
                    R++g+d++++k++eialt+i G+Gr++a + l++++++ dkr+++lt+ee+ ++++ +e                      +++ve+dlrr++++d
     KIR62997.1   3 RLVGVDLPREKRMEIALTYIFGVGRTRALETLAATGISPDKRARDLTDEELVQLRDHIEG---------------------NYKVEGDLRREVAAD 77 
                    89*********************************************************9.....................799************ PP

  Ribosomal_S13  97 ieRlkkirsyrGlRHkrGlkvRGQrTkttgRt 128
                    i+R+ +i++y G+RH+rGl+vRGQrT+t++Rt
     KIR62997.1  78 IRRKVEIGCYAGIRHRRGLPVRGQRTRTNART 109
                    *******************************8 PP

>> H2TH  Formamidopyrimidine-DNA glycosylase H2TH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   2.1e-06     0.019      34      74 ..      20      60 ..      12      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.1e-06
                TTSCS--HHHHHHHHHHTT--TTSBGGGS-HHHHHHHHHHH CS
        H2TH 34 klvaGlGNiyadEvLfrakihPerlakslskeelellhqei 74
                +++ G+G   a E L +++i+P++ a+ l++eel  l ++i
  KIR62997.1 20 TYIFGVGRTRALETLAATGISPDKRARDLTDEELVQLRDHI 60
                6899*****************************99888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 940.62
//
Query:       KIR62998.1  [L=135]
Description: 30S ribosomal protein S11 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-48  162.1   0.9    6.5e-48  161.7   0.9    1.2  1  Ribosomal_S11  Ribosomal protein S11
  ------ inclusion threshold ------
      0.036   13.8   0.2        6.7    6.4   0.0    2.0  2  ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydro


Domain annotation for each model (and alignments):
>> Ribosomal_S11  Ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   0.9   7.3e-52   6.5e-48       1     110 []      25     134 ..      25     134 .. 0.99

  Alignments for each domain:
  == domain 1  score: 161.7 bits;  conditional E-value: 7.3e-52
  Ribosomal_S11   1 GvahiqasfnntiititdlkGaevlvksaGglgvkasrkssPyaaqlaaekaaekvldkGikavevkvkgpGpGreaalralaraGlkigriedvt 96 
                    G ahi+++fnnti+ itd +Ga++ ++saG +g+k+srks+P+aaqlaae+aa++++++G+++v+v vkgpG+Gre+a+r+l++ Gl++g+i dvt
     KIR62998.1  25 GQAHIKSTFNNTIVSITDPTGAVISWASAGQVGFKGSRKSTPFAAQLAAEAAARRAMEHGMRKVDVFVKGPGSGRETAIRSLQAVGLEVGQISDVT 120
                    789********************************************************************************************* PP

  Ribosomal_S11  97 PiPhdgirrpkkrr 110
                    P Ph+g+r+pk+rr
     KIR62998.1 121 PQPHNGCRPPKRRR 134
                    ************98 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0012        11      42      70 ..      21      49 ..      20      54 .. 0.92
   2 ?    6.4   0.0   0.00075       6.7       4      64 ..      59     119 ..      57     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0012
                   HHHHHHHHHHHHCT-EEEEEEESSEEEEE CS
  ELFV_dehydrog 42 nvgsyaallltelgakvvavsDssGviyd 70
                   nv++  a + ++ ++++v++ D +G++++
     KIR62998.1 21 NVAHGQAHIKSTFNNTIVSITDPTGAVIS 49
                   899999999999**************985 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00075
                    TTTTTHHHHHHHHHHHHHHHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEES CS
  ELFV_dehydrog   4 ldrpeaTglGvvyyveemlkklkldslegkrvaisGsGnvgsyaallltelgakvvavsDs 64 
                    ++  ++T + +  ++e++++++  + +++  v + G+G     a++ l+  g +v  +sD 
     KIR62998.1  59 KGSRKSTPFAAQLAAEAAARRAMEHGMRKVDVFVKGPGSGRETAIRSLQAVGLEVGQISDV 119
                    666778888888899999999777799*************************999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1104.67
//
Query:       KIR62999.1  [L=208]
Description: 30S ribosomal protein S4 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-29  102.0   2.3    4.4e-29  101.2   2.3    1.4  1  Ribosomal_S4  Ribosomal protein S4/S9 N-terminal domain
    3.9e-21   74.5   0.2      7e-21   73.7   0.2    1.4  1  S4            S4 domain
  ------ inclusion threshold ------
      0.017   13.8   0.0      0.022   13.4   0.0    1.1  1  GDA1_CD39     GDA1/CD39 (nucleoside phosphatase) family
      0.075   12.8   0.0       0.22   11.3   0.0    1.7  1  DUF2785       Protein of unknown function (DUF2785)


Domain annotation for each model (and alignments):
>> Ribosomal_S4  Ribosomal protein S4/S9 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   2.3   9.7e-33   4.4e-29       1      83 []       3      97 ..       3      97 .. 0.99

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 9.7e-33
                  TT-S-CHHHHCHCTS-STSSS............S-S-SSTTTTS-----CHCHHHHHHHHHHHHHT-SHHHHHHHHHHHHHCCSHHHHHHHHHHH CS
  Ribosomal_S4  1 rykgpkckllRrvgfklflkg............reyppGqhgkrrkklseYgkqlrekqklkrrYgllekqfrryfkearrirGktgenLlqlLE 83
                  ry+g  c+ +Rr+++klflkg            r++ppGqhg+ r+k++eY  qlrekqk++r Yg+lekqfr y++ea  ++ ktge+Llq+LE
    KIR62999.1  3 RYTGADCRRCRREKMKLFLKGskcdgpkcpfesRPFPPGQHGRGRTKETEYLLQLREKQKARRVYGVLEKQFRGYYEEAVAKQAKTGEVLLQILE 97
                  8*********************************************************************************************9 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.2   1.6e-24     7e-21       2      48 .]      99     145 ..      98     145 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 1.6e-24
                 EHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4   2 RLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48 
                 RLd+v++r+g+a+sr  Arql++hG+++VNGk+v++psyrVk+ D+i
  KIR62999.1  99 RLDNVVYRAGYAKSRDMARQLVKHGHFTVNGKKVDIPSYRVKEHDII 145
                 9********************************************97 PP

>> GDA1_CD39  GDA1/CD39 (nucleoside phosphatase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.9e-06     0.022     267     325 ..       7      65 ..       2      96 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.9e-06
   GDA1_CD39 267 gnyeqCrksikellnknakCkaeeClfngvfapsidllqklfgaseyfYtvsdvlklgg 325
                 ++  +Cr++  +l+ k +kC+ ++C f++   p+ +   +  ++ ey+ ++ +  k  +
  KIR62999.1   7 ADCRRCRREKMKLFLKGSKCDGPKCPFESRPFPPGQHGRGRTKETEYLLQLREKQKARR 65 
                 57789*****************************9999999999999888776665555 PP

>> DUF2785  Protein of unknown function (DUF2785)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.9e-05      0.22      49     147 ..      65     180 ..      50     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.9e-05
     DUF2785  49 aeylkleqDvRGy......................veekGWaHafahiadlldellkepelkradailllelivkkltrtqsvlaadEdeRlatailal 125
                   y +le+++RGy                       ++  + + +a+  d+  +l+k+ +++ +++   +++   ++++++ + + + +++l+  i+a 
  KIR62999.1  65 RVYGVLEKQFRGYyeeavakqaktgevllqilesrLDNVVYRAGYAKSRDMARQLVKHGHFTVNGKK--VDIPSYRVKEHDIIEVRGKSKELTPFIVAQ 161
                 568899*******999999999999999999999988888999999999999999999999999988..777788888888888888888887777777 PP

     DUF2785 126 leknkleeetllawleelrqel 147
                 +e +   ++t+ awle +  ++
  KIR62999.1 162 AEAG---SKTVPAWLEAIPSQM 180
                 7776...777888887776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       844  (0.0470746); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1611.13
//
Query:       KIR63000.1  [L=340]
Description: DNA-directed RNA polymerase subunit alpha [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-25   88.7   0.0    3.2e-25   87.7   0.0    1.5  1  RNA_pol_A_CTD  Bacterial RNA polymerase, alpha chain C termin
      2e-23   82.9   0.0    3.6e-23   82.1   0.0    1.3  1  RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
      4e-18   64.6   0.0    6.1e-18   64.0   0.0    1.3  1  RNA_pol_L      RNA polymerase Rpb3/Rpb11 dimerisation domain
     0.0035   17.9   0.2        0.5   11.0   0.0    3.1  3  HHH_5          Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> RNA_pol_A_CTD  Bacterial RNA polymerase, alpha chain C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   7.1e-29   3.2e-25       8      66 ..     244     302 ..     238     303 .. 0.94

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 7.1e-29
                    XXXX--BHHHHT--HHHHHHHHHTT--BHHHHHHS-HHHHTTSSS-SSHHHHHHHHHHH CS
  RNA_pol_A_CTD   8 lkklsisIeeLeLSvRslNcLkragiktvgeLvklseeeLlkikNlGkKSleEIkekLe 66 
                     + l+ +IeeL+L+vRs+NcLkr+gi++vgeL+ ++e++Ll i+N+G+KS++E+k kL+
     KIR63000.1 244 AADLALPIEELDLTVRSYNCLKREGINSVGELIGRTEADLLDIRNFGQKSIDEVKMKLA 302
                    567999***************************************************96 PP

>> RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0     8e-27   3.6e-23       6     110 ..      57     150 ..      52     154 .. 0.91

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 8e-27
                    CTSSS.HHHHHCHHHCSTCBSSCHHHHHHHHCTT-ETSSSSTTCSEEEEEEEEESSECEEGGGCBESSSSCEESSTTSEEEEEETT-EEEEEEEEE CS
  RNA_pol_A_bac   6 ntsvlqDEvvaHrlgliplvsedvleillnlkelveeeeegeeeksvelkLnvkgpgevtagdlkledadveivnpdilIakLrkgqeleleakvk 101
                    ++       v+H++++ip+v+edv+e+++n+kel      +e ++ v+++L+++gpg+vtagd++  +a v + npd+ +a+L+ + +l++e++v+
     KIR63000.1  57 DG-------VLHEFTTIPGVKEDVVELVMNIKELC---VSSEHDEPVSMYLRKQGPGDVTAGDIQP-PAGVSVHNPDLKLATLNGKGRLDMELTVE 141
                    44.......99***********************4...455555558*******************.***************************** PP

                    EESSEECTT CS
  RNA_pol_A_bac 102 kGiGkehak 110
                    +G+G++ a 
     KIR63000.1 142 RGRGYVTAA 150
                    *****9985 PP

>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   1.4e-21   6.1e-18       1      68 [.      24     218 ..      24     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 1.4e-21
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................................... RF
   RNA_pol_L   1 efllrgvdhtlgNaLRrillsevpgvaiea..................................................................... 30 
                 e+l+ g+++tlgN+LRr+lls++pg+a+++                                                                     
  KIR63000.1  24 EPLEPGFGYTLGNSLRRTLLSSIPGAAVTSikidgvlhefttipgvkedvvelvmnikelcvssehdepvsmylrkqgpgdvtagdiqppagvsvhnpd 122
                 79******************************************************************9999999999999999999999999999999 PP

                 ...............................................xxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L  31 ...............................................pvvkvn...........tdkdklilevetdgslkPeealkeAlkiLkek 68 
                                                                pv kv+           td+d+li++vet+ s+ P+ al++A   L+e 
  KIR63000.1 123 lklatlngkgrldmeltvergrgyvtaaqnkqagaeigripvdsiysPVLKVTyrveatrveqrTDFDRLIIDVETKPSMGPRTALASAGSTLVEL 218
                 9998888888888888888888888888888888888888777777766555566666677788*************************9999875 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.036   1.6e+02      27      51 ..      52      77 ..      33      83 .. 0.67
   2 ?   -0.8   0.0      0.55   2.5e+03       9      17 ..     201     209 ..     191     224 .. 0.79
   3 !   11.0   0.0   0.00011       0.5      19      55 ..     265     301 ..     261     302 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.036
                HHH.HHS-HHHHHTSTTS-HHHHHHH CS
       HHH_5 27 edl.aaadveeLakipGiGkktAeri 51
                  + ++   +e+++ipG+ ++ +e +
  KIR63000.1 52 TSIkIDGVLHEFTTIPGVKEDVVELV 77
                45534667799*******99988765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.55
                 T--HHHHHH CS
       HHH_5   9 GiGpktAla 17 
                  +Gp+tAla
  KIR63000.1 201 SMGPRTALA 209
                 589999998 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00011
                 HTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHH CS
       HHH_5  19 lsaGiesvedlaaadveeLakipGiGkktAeriilel 55 
                  + Gi+sv +l+  ++++L +i  +G+k  + +++ l
  KIR63000.1 265 KREGINSVGELIGRTEADLLDIRNFGQKSIDEVKMKL 301
                 4569**************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2515.71
//
Query:       KIR63001.1  [L=188]
Description: 50S ribosomal protein L17 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-37  125.9   0.1    1.5e-36  125.1   0.1    1.4  1  Ribosomal_L17  Ribosomal protein L17


Domain annotation for each model (and alignments):
>> Ribosomal_L17  Ribosomal protein L17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.1   8.6e-41   1.5e-36       1      94 []      20     116 ..      20     116 .. 0.97

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 8.6e-41
                    HHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHS-...HHHHHHHTHHHHTSS--S--EEEEEEEE-TTTH-EEEEEEE CS
  Ribosomal_L17   1 LlrnlvtsLleherIetTlakAkelrklaeklitlakkgelaarrkalayla...lvkkLfeelapryadrngGYtRilklgprrgDaaemailel 93 
                    +l nl+t+L++h++I+tT++kA++lr+lae+lit+ak+g+la+rr++l +++   +v  Lf+++aprya+r+gGYtRi+k+gpr+gDaa+mai+el
     KIR63001.1  20 MLANLATALFQHGKIQTTETKARRLRPLAEQLITKAKRGDLASRRRVLGVVKdkdVVYALFDQIAPRYANRPGGYTRIVKTGPRKGDAAPMAIIEL 115
                    899********************************************999955569**************************************** PP

                    - CS
  Ribosomal_L17  94 V 94 
                    V
     KIR63001.1 116 V 116
                    8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       935  (0.0521501); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1461.54
//
Query:       KIR63002.1  [L=281]
Description: pseudouridine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-27   96.7   0.0      3e-21   75.9   0.0    2.2  2  PseudoU_synth_1  tRNA pseudouridine synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_1  tRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   9.2e-08    0.0016       2     107 ..      10     111 ..       9     112 .. 0.81
   2 !   75.9   0.0   1.7e-25     3e-21       1     108 []     152     254 ..     152     254 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 9.2e-08
  PseudoU_synth_1   2 akelvGthdfgsfckqkqekkntvrtileaaieevsgeekellvvtvkgsgFldhqVRamvgvl.favgqgklsped..vkellnakkrkkiav 92 
                      a++++Gt ++g +  + q++++tv  +l  +++ v g     +   ++ +g++d++V+a ++v+ ++     ++  +  + + l+  +++++ v
       KIR63002.1  10 AVAYDGTGFSG-W--AAQPTRRTVAGVLAETLDLVLGAG---VATGLTVAGRTDAGVHATGQVChLDLPAAVWAGHEgrLLRRLARLLPTDVRV 97 
                      899********.9..89999*************888884...7899******************777766555543322666666667888888 PP

  PseudoU_synth_1  93 etapavglvlfhvrY 107
                      + + +v+  +f++r+
       KIR63002.1  98 RAMTPVPA-DFDARF 111
                      88999988.888888 PP

  == domain 2  score: 75.9 bits;  conditional E-value: 1.7e-25
  PseudoU_synth_1   1 AakelvGthdfgsfckqkqekkntvrtileaaieevsgeekellvvtvkgsgFldhqVRamvgvlfavgqgklspedvkellnakkrkkiavet 94 
                      Aa  lvG+hdf+++c++k+ + +t r++++ +++   +  ++llv+tv++++F++++VR +vg+++  g g++++++  +ll  ++r++  v++
       KIR63002.1 152 AAAGLVGEHDFAAYCRRKE-HATTLREVTRLDWR---RDPDGLLVATVQADAFCQAMVRSLVGAMLVAGDGRRPVQWPGSLLTRRERSS-EVTV 240
                      7889**********96665.569***********...666789********************************************99.**** PP

  PseudoU_synth_1  95 apavglvlfhvrYd 108
                      apa+gl+l+ v Y+
       KIR63002.1 241 APAHGLTLVAVGYP 254
                      *************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2301.23
//
Query:       KIR63003.1  [L=359]
Description: hypothetical protein TK50_19000 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2335.05
//
Query:       KIR63004.1  [L=558]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-31  109.7   0.0    8.1e-17   62.0   0.0    3.1  2  ABC_tran      ABC transporter
    7.1e-17   62.2   3.3     0.0012   18.7   0.0    4.2  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.7e-08   34.2   0.0      0.063   12.7   0.0    4.1  4  SMC_N         RecF/RecN/SMC N terminal domain
    1.8e-05   24.7   0.5       0.27   11.2   0.1    3.6  4  NACHT         NACHT domain
    9.5e-05   22.1   0.0      0.044   13.5   0.0    2.7  2  AAA_29        P-loop containing region of AAA domain
    0.00012   22.4   0.2       0.22   11.8   0.1    3.3  3  AAA_22        AAA domain
    0.00016   22.1   7.9     0.0085   16.5   0.7    2.9  2  AAA_16        AAA ATPase domain
    0.00026   20.8   0.0       0.16   11.7   0.0    2.3  2  AAA_24        AAA domain
    0.00037   20.8   4.0       0.44   10.8   0.4    3.4  3  AAA_28        AAA domain
    0.00041   20.5   0.7        0.2   11.8   0.1    2.8  2  AAA_33        AAA domain
    0.00045   20.8   0.0      0.026   15.0   0.0    2.4  2  AAA_23        AAA domain
     0.0014   19.1   0.2      0.044   14.2   0.0    2.8  2  AAA           ATPase family associated with various cellular 
      0.002   18.7   0.7        4.2    7.9   0.0    3.3  3  AAA_18        AAA domain
     0.0022   18.0   0.1       0.12   12.3   0.0    2.3  2  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
     0.0025   17.9   0.0       0.01   15.9   0.0    1.9  2  DUF87         Helicase HerA, central domain
     0.0038   17.2   0.0      0.097   12.6   0.1    2.3  2  RsgA_GTPase   RsgA GTPase
     0.0046   17.0   0.4        1.5    8.9   0.1    3.0  3  MMR_HSR1      50S ribosome-binding GTPase
      0.006   16.2   3.5       0.79    9.3   0.0    3.4  3  AAA_25        AAA domain
  ------ inclusion threshold ------
      0.019   15.0   0.0      0.032   14.3   0.0    1.3  1  ABC_tran_Xtn  ABC transporter
      0.022   14.5   0.0        2.3    7.8   0.0    2.1  2  AAA_15        AAA ATPase domain
      0.029   14.1   6.0       0.79    9.4   0.3    3.3  3  AAA_30        AAA domain
      0.037   14.3   0.0        1.3    9.3   0.0    2.3  2  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.037   13.8   0.2         11    5.7   0.0    2.5  2  IstB_IS21     IstB-like ATP binding protein
      0.044   13.8   1.2       0.11   12.5   1.2    1.6  1  Tox-GHH       GHH signature containing HNH/Endo VII superfami
      0.075   13.4   0.1         16    5.9   0.0    2.3  2  RNA_helicase  RNA helicase
       0.12    9.8   3.7       0.21    9.1   0.1    2.4  3  DUF3584       Protein of unknown function (DUF3584)
       0.14   11.4   0.1          1    8.6   0.0    2.2  2  Zeta_toxin    Zeta toxin
       0.15   12.0   1.9        5.3    7.0   0.1    2.7  2  AAA_5         AAA domain (dynein-related subfamily)
       0.18   11.3   0.0        3.7    7.0   0.0    2.2  2  AAA_7         P-loop containing dynein motor region
       0.22   10.5   1.6       0.47    9.4   0.8    1.9  2  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
       0.26   10.8   1.3        0.5    9.9   0.1    2.1  2  cobW          CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   1.4e-19   8.1e-17       2     137 .]      21     199 ..      20     199 .. 0.64
   2 !   44.1   0.0   4.6e-14   2.7e-11       5     136 ..     355     501 ..     352     502 .. 0.70

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 1.4e-19
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE...EETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGei...lldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................. 79 
                  +vs+ + eg kva+vG+nGaGK+tLl+++ag l   +G i              l ++r+ ig++  +++l +                         
  KIR63004.1  21 TDVSFRVGEGAKVALVGPNGAGKTTLLRMVAGDLPVRSGGIarsG---------GLGVMRQFIGMIGDDSTLADLALSL-Appalrdagrrlteteaam 109
                 689**************************************4440.........4555666666666665554444222.1345555565555554444 PP

                 ................................HHHTCHHHHHHHSTTGG...................TTCBGESTTSGGS-HHHHHHHHHHHHHHHTS CS
                 ................................xxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ................................esdeeiekalsklglke...................lkdtvvksspssLSgGqkqrvalarallkkp 127
                                                 +               +                    ++++v    ++LSgGq++r al  +l    
  KIR63004.1 110 raaelrgkfgnaaakaqlayadalaawgeaggY---------------DaevvfdtvativldvpwdaARERPV----RTLSGGQQKRFALELLLRGPD 189
                 444444444444433333333334444554541...............03333333333334422222555555....********************* PP

                 SEEEEESTTT CS
                 xxxxxxxxxx RF
    ABC_tran 128 kllllDEpta 137
                 ++lllDEp +
  KIR63004.1 190 EVLLLDEPDN 199
                 ********75 PP

  == domain 2  score: 44.1 bits;  conditional E-value: 4.6e-14
                 EEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGG.........B-HHHCCHCEEEE-SS--S-TTSBHHHH............ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxx............ RF
    ABC_tran   5 slklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlke.........qeleslrkeigvlpqepqlfpeltvren............ 79 
                 +l++  g +va++G nG+GKS +l+lla+  ++   ++G +  dg+                ++   +++  +  p+l ++     +            
  KIR63004.1 355 DLEIWFGDRVAVLGANGTGKSHFLRLLARGGTDpdpANGPV--DGAAALApvahdgvvrLGARVRPGHFSQTHDRPELMQK-----Tlvevlwrgddhr 446
                 6788899********************97543224489998..55444444444443323333333333333333555555.....2444478877776 PP

                 ..HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ..esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                    ++  + +als+++l +  d++      +LSgGq+ r  +  + l+ ++llllDEpt
  KIR63004.1 447 agMDRHAAMAALSRYELAGQGDQRF----GTLSGGQQARFLVLLLELSGATLLLLDEPT 501
                 5333333778888888888888888....*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.5e-05    0.0085       3      19 ..      34      50 ..      33      81 .. 0.84
   2 !   18.7   0.0   2.1e-06    0.0012     226     279 ..     160     210 ..     141     231 .. 0.73
   3 !   13.5   0.0   8.1e-05     0.047       3      21 ..     365     383 ..     364     411 .. 0.83
   4 !   11.2   0.0   0.00039      0.23     242     276 ..     478     510 ..     445     530 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.5e-05
      AAA_21  3 vliGpNgsGKSnLLdal 19
                +l+GpNg+GK++LL+  
  KIR63004.1 34 ALVGPNGAGKTTLLRMV 50
                79************965 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 2.1e-06
      AAA_21 226 ngdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHP...kllrrll 279
                  +  +e+p+r lS G+++ +al ++l   +    +ll+DEp+n+L+    +    l 
  KIR63004.1 160 WDAARERPVRTLSGGQQKRFALELLLRGPD---EVLLLDEPDNFLDVpgkR---WLE 210
                 566899************977777777666...9***********984443...333 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 8.1e-05
      AAA_21   3 vliGpNgsGKSnLLdaldl 21 
                 ++ G+Ng+GKS++L++l  
  KIR63004.1 365 AVLGANGTGKSHFLRLLAR 383
                 689**************54 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 0.00039
      AAA_21 242 krllalltallralkkgsllliDEpEngLHPkllr 276
                 +++ ++l++ll++ +  +lll+DEp  +L+ +  +
  KIR63004.1 478 QQA-RFLVLLLELSGA-TLLLLDEPTDNLDLASAE 510
                 455.899999999999.************985444 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0057       3.3      27      41 ..      33      47 ..      21      54 .. 0.85
   2 !   12.7   0.0   0.00011     0.063     136     211 ..     170     240 ..      79     245 .. 0.82
   3 ?    4.7   0.0     0.031        18      27      41 ..     364     378 ..     354     382 .. 0.85
   4 ?    4.4   0.0     0.038        22     136     207 ..     473     538 ..     417     549 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0057
                EEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxx RF
       SMC_N 27 taivGpNGSGKsnll 41
                 a+vGpNG+GK+ ll
  KIR63004.1 33 VALVGPNGAGKTTLL 47
                589*********987 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00011
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-.SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka.dklvgv 211
                 +LSgG+++  al Ll+      p  + llDe d  LD    + + ++l+e+     ++ +s+++e+l++  d++v v
  KIR63004.1 170 TLSGGQQKRFALELLL----RGPDEVLLLDEPDNFLDVPGKRWLEDRLRESA--KSVLYVSHDRELLARTaDRVVAV 240
                 7*************95....79999*************************99..56889999998876543888776 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.031
                 EEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnll 41 
                  a++G+NG GKs +l
  KIR63004.1 364 VAVLGANGTGKSHFL 378
                 5899********886 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.038
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadk 207
                 +LSgG+++      l+ + + + a l llDe   +LD +  +++   l +      +i +++++ +++  d+
  KIR63004.1 473 TLSGGQQARF----LVLLLELSGATLLLLDEPTDNLDLASAEALEAGLAAFA--GTVIAVTHDRWFTRSLDR 538
                 6999999754....44456999*****************9999988887776..567777777666665555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   0.00046      0.27       3      23 ..      33      53 ..      31      59 .. 0.88
   2 ?    0.4   0.0      0.94   5.4e+02      75     128 ..     183     225 ..     153     265 .. 0.59
   3 !    8.4   0.0    0.0032       1.8       2      23 ..     363     384 ..     362     394 .. 0.85
   4 ?   -2.6   0.0       7.7   4.5e+03      68      88 ..     478     498 ..     472     505 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00046
                EEEEC-TTTCHHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklala 23
                v+l G++G GKTtLl+ +a +
  KIR63004.1 33 VALVGPNGAGKTTLLRMVAGD 53
                789*************99865 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.94
                 HHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEE CS
       NACHT  75 vllelperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvr 128
                 +ll+ p+  +l+lD  D + + +g+       ++L++ +r+   +  s+l  ++
  KIR63004.1 183 LLLRGPDE-VLLLDEPDNFLDVPGK-------RWLEDRLRE---SAKSVLYVSH 225
                 23333333.3788999999998888.......888888888...3333333333 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0032
                 CEEEEC-TTTCHHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklala 23 
                  v++ G++G GK+++l+ la+ 
  KIR63004.1 363 RVAVLGANGTGKSHFLRLLARG 384
                 689**************99875 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 7.7
                 SS-CCHHHHCCSCCCEEEEEE CS
       NACHT  68 pvsevwavllelperlLlilD 88 
                 ++ ++ ++llel   +Ll+lD
  KIR63004.1 478 QQARFLVLLLELSGATLLLLD 498
                 556678899999999999999 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   7.5e-05     0.044      12      39 ..      20      47 ..      18      50 .. 0.80
   2 ?    5.4   0.0     0.027        16      24      38 ..     363     377 ..     348     380 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.5e-05
      AAA_29 12 fdghtieidlkg.atlltGpsGsGKSTll 39
                f++ ++++  +g  + l+Gp+G+GK+Tll
  KIR63004.1 20 FTDVSFRVG-EGaKVALVGPNGAGKTTLL 47
                556666676.44599************98 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.027
      AAA_29  24 atlltGpsGsGKSTl 38 
                  + + G++G+GKS +
  KIR63004.1 363 RVAVLGANGTGKSHF 377
                 57899********76 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00039      0.22       9      29 ..      34      54 ..      29      65 .. 0.87
   2 ?    0.2   0.0       1.5   8.6e+02      84     110 ..     182     210 ..     163     222 .. 0.75
   3 ?    5.6   0.0     0.032        18       9      27 ..     365     383 ..     363     431 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00039
      AAA_22  9 vvtGesGtGKTtllrrlleql 29
                +++G+ G+GKTtllr+++  l
  KIR63004.1 34 ALVGPNGAGKTTLLRMVAGDL 54
                79*************998766 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.5
      AAA_22  84 qalraravielliiDEaqh.lr..seeale 110
                 + l +  + e+l++DE ++ l+   ++ le
  KIR63004.1 182 ELLLRGPD-EVLLLDEPDNfLDvpGKRWLE 210
                 45556666.8********966564355554 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.032
      AAA_22   9 vvtGesGtGKTtllrrlle 27 
                 +v G  GtGK++ lr l++
  KIR63004.1 365 AVLGANGTGKSHFLRLLAR 383
                 689************9987 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.7   1.5e-05    0.0085      25     107 ..      31     135 ..      17     237 .. 0.68
   2 !    8.4   1.3    0.0044       2.6      27     158 ..     364     519 ..     361     528 .. 0.47

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.5e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekd.ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala................ 106
                   v l+G+ G GK++l+r+++  l  + ggi+ +g            +++ ++  ++ l++l+  ++  +l+++ ++l+e+ a                
  KIR63004.1  31 AKVALVGPNGAGKTTLLRMVAGDLPVRsGGIARSGGLGVM------RQFIGMIGDDSTLADLALSLAPPALRDAGRRLTETEAamraaelrgkfgnaaa 123
                 4589*****************9888883455555555555......55777777777777777776666666666666666554544444444445555 PP

      AAA_16 107 ...........a 107
                            a
  KIR63004.1 124 kaqlayadalaA 135
                 554444444440 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0044
      AAA_16  27 vllsGesGvGKsslvrellralekd........................ggiflrgkcdqlesaipysalaqalareellrqllde.......aesael 94 
                 v + G+ G+GKs  +r l+r  ++                         g+ +  g++ q              +r el+++ l e       +    +
  KIR63004.1 364 VAVLGANGTGKSHFLRLLARGGTDPdpangpvdgaaalapvahdgvvrlGARVRPGHFSQT------------HDRPELMQKTLVEvlwrgddH---RA 447
                 789****************733333556666776666666665444444344444444444............444333333333322221111...11 PP

      AAA_16  95 eawrekleeala...............avpelagaeasrllellkrllallsrderplvlvlD....dlqwadeaslql.laaL 158
                 + +r++     a                 + l+g +  r+l ll +l          ++l+lD    +l+ a ++ l++ laa+
  KIR63004.1 448 GMDRHA-----AmaalsryelagqgdqRFGTLSGGQQARFLVLLLELS-------GATLLLLDeptdNLDLASAEALEAgLAAF 519
                 111111.....1222212222222222333444444455555544444.......33555555444355555555555555555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00028      0.16       2      22 ..      30      50 ..      29      57 .. 0.87
   2 !    6.8   0.0    0.0089       5.1       4      22 ..     363     381 ..     361     399 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00028
      AAA_24  2 klkiliyGpsgiGKTtlakel 22
                ++k++++Gp+g+GKTtl+++ 
  KIR63004.1 30 GAKVALVGPNGAGKTTLLRMV 50
                689**************9876 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0089
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 ++++ G +g+GK+++++ l
  KIR63004.1 363 RVAVLGANGTGKSHFLRLL 381
                 799************9987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.4   0.00076      0.44       1      20 [.      32      51 ..      32     172 .. 0.90
   2 ?   -1.9   0.1       6.1   3.5e+03     129     142 ..     268     281 ..     207     311 .. 0.61
   3 !    9.6   0.0    0.0018         1       1      24 [.     363     386 ..     363     393 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00076
      AAA_28  1 kivitGgestGKTtlleaLa 20
                k++++G+ ++GKTtll+  a
  KIR63004.1 32 KVALVGPNGAGKTTLLRMVA 51
                799*************9887 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 6.1
      AAA_28 129 edleereaiderlr 142
                 e  +++ + +++lr
  KIR63004.1 268 ELRRRWDEEHQKLR 281
                 22222233333333 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0018
      AAA_28   1 kivitGgestGKTtlleaLaargy 24 
                 +++++G+ +tGK+  l+ La+ g+
  KIR63004.1 363 RVAVLGANGTGKSHFLRLLARGGT 386
                 799****************98765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00035       0.2       2      24 ..      33      55 ..      33      61 .. 0.87
   2 ?    6.1   0.1      0.02        11       3      21 ..     365     383 ..     364     387 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00035
      AAA_33  2 vllvGlpGsGKstlaerllkklg 24
                v lvG++G+GK+tl++ ++  l+
  KIR63004.1 33 VALVGPNGAGKTTLLRMVAGDLP 55
                569************99987665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.02
      AAA_33   3 llvGlpGsGKstlaerllk 21 
                  + G++G+GKs++++ l++
  KIR63004.1 365 AVLGANGTGKSHFLRLLAR 383
                 578***********98875 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.6e-05     0.026      23      37 ..      34      48 ..      20      51 .. 0.86
   2 ?    2.9   0.0      0.23   1.4e+02      23      39 ..     365     381 ..     353     400 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.6e-05
      AAA_23 23 lItGpNGaGKTTild 37
                +++GpNGaGKTT+l+
  KIR63004.1 34 ALVGPNGAGKTTLLR 48
                789**********97 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.23
      AAA_23  23 lItGpNGaGKTTildAi 39 
                 ++ G NG+GK+ +l+ +
  KIR63004.1 365 AVLGANGTGKSHFLRLL 381
                 678********888766 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   7.6e-05     0.044       2      24 ..      34      56 ..      33     110 .. 0.86
   2 ?    1.7   0.0      0.58   3.3e+02       3      20 ..     366     383 ..     364     389 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.6e-05
                EEESSTTSSHHHHHHHHHHHHTH CS
         AAA  2 llyGppGtGKTllakavakelgv 24
                 l+Gp G GKT+l + va +l v
  KIR63004.1 34 ALVGPNGAGKTTLLRMVAGDLPV 56
                69****************99854 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.58
                 EESSTTSSHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavak 20 
                 + G  GtGK+ + + +a+
  KIR63004.1 366 VLGANGTGKSHFLRLLAR 383
                 789********9999986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0072       4.2       1      19 [.      33      51 ..      33     167 .. 0.80
   2 ?    1.2   0.2      0.87   5.1e+02      69     112 ..     218     275 ..     176     282 .. 0.74
   3 ?    6.1   0.0     0.026        15       1      21 [.     364     384 ..     364     399 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0072
      AAA_18  1 IlltGtpGvGKttlakeLs 19
                ++l G+ G+GKttl + ++
  KIR63004.1 33 VALVGPNGAGKTTLLRMVA 51
                6899**********99774 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.87
      AAA_18  69 s............aleegknlvidghlaeleseaakdikk..vvLtaspeelleRlek 112
                 +            a++   ++ ++g  a+  +  +  ++   vv +a+ +el++R  +
  KIR63004.1 218 KsvlyvshdrellARTADRVVAVEGGSAWVHPGGFASWHEarVVRHARLDELRRRWDE 275
                 3444444445555677778889999999999999999998888888888999888655 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.026
      AAA_18   1 IlltGtpGvGKttlakeLskr 21 
                 +++ G+ G+GK+ + + L++ 
  KIR63004.1 364 VAVLGANGTGKSHFLRLLARG 384
                 6899**************885 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00021      0.12      19      44 ..      30      55 ..      12      66 .. 0.78
   2 ?    3.1   0.0      0.15        88      19      42 ..     361     384 ..     340     394 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00021
                TEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE 19 gdvilLeGdLGaGKTtlvrglakalg 44
                g+ ++L G+ GaGKTtl r +a  l 
  KIR63004.1 30 GAKVALVGPNGAGKTTLLRMVAGDLP 55
                5569***************9998775 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.15
                 TEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglaka 42 
                 gd ++  G  G+GK+++ r la++
  KIR63004.1 361 GDRVAVLGANGTGKSHFLRLLARG 384
                 5668889999**********9987 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.8   2.2e+03      25      41 ..      32      48 ..       9      51 .. 0.83
   2 !   15.9   0.0   1.8e-05      0.01      10      45 ..     348     383 ..     340     389 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.8
       DUF87 25 HlAilgsTGsGKSntva 41
                 +A +g  G+GK+++ +
  KIR63004.1 32 KVALVGPNGAGKTTLLR 48
                58999999*****9976 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.8e-05
       DUF87  10 sevpvyldlnklvtrHlAilgsTGsGKSntvavLle 45 
                 ++++ ++dl+ ++  ++A+lg  G+GKS++ ++L +
  KIR63004.1 348 DGLTYPFDLEIWFGDRVAVLGANGTGKSHFLRLLAR 383
                 5678899**************************986 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   0.00017     0.097     100     136 ..      31      67 ..      15      70 .. 0.83
   2 ?    1.8   0.0      0.35     2e+02     101     120 ..     363     382 ..     352     389 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00017
                  SEEEEECSTTSSHHHHHHHHCTT-----S-------- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevseklgr 136
                    ++lvG+ G+GK+tL+ +++++l ++ g + ++ g 
   KIR63004.1  31 AKVALVGPNGAGKTTLLRMVAGDLPVRSGGIARSGGL 67 
                  6689******************999999988877665 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.35
                  EEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinall 120
                   ++++G  G GKS ++  l+
   KIR63004.1 363 RVAVLGANGTGKSHFLRLLA 382
                  45678*********999886 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1    0.0026       1.5       1      22 [.      32      53 ..      32      73 .. 0.87
   2 ?   -1.5   0.0       4.6   2.7e+03      49      82 ..     199     223 ..     185     241 .. 0.61
   3 ?    4.8   0.0      0.05        29       1      21 [.     363     383 ..     363     397 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0026
                EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltge 22
                +va+vG   +GK+tL++   g+
  KIR63004.1 32 KVALVGPNGAGKTTLLRMVAGD 53
                69**************988875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4.6
                 EEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEE CS
    MMR_HSR1  49 elvDtpGliegaseekglgkaflaleeadlillv 82 
                 +++D+pG  +     ++l++++++  +a+ +l+v
  KIR63004.1 199 NFLDVPG--K-----RWLEDRLRE--SAKSVLYV 223
                 7899999..2.....235444443..33444444 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.05
                 EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg 21 
                 +va++G   +GKS +++ l +
  KIR63004.1 363 RVAVLGANGTGKSHFLRLLAR 383
                 69**************99976 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0014      0.79      30      50 ..      27      47 ..      11      54 .. 0.88
   2 ?   -0.9   0.3       1.7     1e+03      60      95 ..     205     242 ..     202     291 .. 0.67
   3 ?    5.6   0.0     0.018        10      33      90 ..     361     416 ..     357     460 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0014
      AAA_25 30 lpagelallaGapgtGKttla 50
                + +g+ ++l+G+ g+GKttl+
  KIR63004.1 27 VGEGAKVALVGPNGAGKTTLL 47
                568999*************97 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.7
      AAA_25  60 Gkpwlg.pvapeqgkVlyvsaEds.edelrrRlravge 95 
                 Gk wl+ +++     Vlyvs +    ++++ R+ av  
  KIR63004.1 205 GKRWLEdRLRESAKSVLYVSHDRElLARTADRVVAVEG 242
                 78888888888888999999777755566666666654 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.018
      AAA_25  33 gelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRl 90 
                 g+ +++ Ga gtGK+ ++  la   +  +p  gpv    ++ l  +a d+  +l  R+
  KIR63004.1 361 GDRVAVLGANGTGKSHFLRLLARGGTDPDPANGPV--DGAAALAPVAHDGVVRLGARV 416
                 5678899***************9999999999965..666666666666655666555 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.5e-05     0.032       2      76 ..     239     317 ..     238     329 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.5e-05
  ABC_tran_Xtn   2 elengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfraka....kkakqaqsrekaLeklekiekp 76 
                    +e+g+++  +G + ++ e +  r ++  + +++  +e +kl++ +  +++ka      a++ q+ + +L k e+  +p
    KIR63004.1 239 AVEGGSAWVHPGGFASWHEARVVRHARLDELRRRWDEEHQKLRDLVLMYKQKAayndGLASRYQAAQTRLRKFEEAGPP 317
                   58999**********************************************9999995555666666666666655555 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0     0.004       2.3      26      42 ..      33      49 ..      20      50 .. 0.86
   2 ?    4.5   0.0     0.042        24      18      43 ..     357     381 ..     354     383 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
      AAA_15 26 tvliGkNnsGKSsilea 42
                  l+G+N++GK+++l++
  KIR63004.1 33 VALVGPNGAGKTTLLRM 49
                689***********975 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.042
      AAA_15  18 eidlseeltvliGkNnsGKSsileal 43 
                 ei + +    + G+N++GKS +l++l
  KIR63004.1 357 EIWFGD-RVAVLGANGTGKSHFLRLL 381
                 677777.77888***********998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3    0.0014      0.79      20      39 ..      32      51 ..      24      66 .. 0.85
   2 ?    0.6   0.1      0.71   4.1e+02     131     168 ..     247     286 ..     232     310 .. 0.72
   3 ?    4.8   0.1     0.034        20      22      44 ..     365     387 ..     360     420 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0014
      AAA_30 20 vavltGpAGtGKttalkalr 39
                 ++l+Gp G+GKtt+l+ ++
  KIR63004.1 32 KVALVGPNGAGKTTLLRMVA 51
                4689************9885 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.71
      AAA_30 131 VeaGgvlrdlveaagigtaeLtevvRq...keseeraaala 168
                 V++Gg  ++  ea+  ++a+L+e++R    ++++ r+++l 
  KIR63004.1 247 VHPGGFASWH-EARVVRHARLDELRRRwdeEHQKLRDLVLM 286
                 6667766666.78899*********9943222455555554 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.034
      AAA_30  22 vltGpAGtGKttalkalreawea 44 
                 ++ G+ GtGK++ l+ l++  ++
  KIR63004.1 365 AVLGANGTGKSHFLRLLARGGTD 387
                 67899**********99876554 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0022       1.3       1      18 [.      32      49 ..      32      55 .. 0.89
   2 ?    2.5   0.0      0.29   1.7e+02       1      23 [.     363     385 ..     363     394 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0022
                EEEEESSTTSSHHHHHHC CS
         Roc  1 KvvlvGdsgvGKtsllkr 18
                Kv lvG +g+GKt+ll+ 
  KIR63004.1 32 KVALVGPNGAGKTTLLRM 49
                89*************986 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.29
                 EEEEESSTTSSHHHHHHCHCT-C CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedk 23 
                 +v ++G +g+GK+ +l+ + ++ 
  KIR63004.1 363 RVAVLGANGTGKSHFLRLLARGG 385
                 5889**********998877665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.019        11      45      63 ..      28      46 ..      18      59 .. 0.84
   2 ?    5.4   0.1     0.024        14      49      65 ..     363     379 ..     358     387 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.019
   IstB_IS21 45 ekkenivllGpsGvGKshl 63
                 + + ++l+Gp G+GK+ l
  KIR63004.1 28 GEGAKVALVGPNGAGKTTL 46
                567889**********987 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.024
   IstB_IS21  49 nivllGpsGvGKshlai 65 
                  +++lG  G+GKsh+  
  KIR63004.1 363 RVAVLGANGTGKSHFLR 379
                 689***********965 PP

>> Tox-GHH  GHH signature containing HNH/Endo VII superfamily nuclease toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.2   0.00019      0.11       4      28 ..     258     282 ..     256     308 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00019
     Tox-GHH   4 krllehakkravreaWkrErqllre 28 
                 +r+++ha+   +r++W +E+q+lr+
  KIR63004.1 258 ARVVRHARLDELRRRWDEEHQKLRD 282
                 79*********************97 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.028        16       2      22 ..      34      54 ..      33      64 .. 0.85
   2 ?    5.3   0.0     0.043        25       2      20 ..     365     383 ..     364     388 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.028
  RNA_helicase  2 wlyGpsgeGKStlakeLakal 22
                   l+Gp+g GK+tl + +a +l
    KIR63004.1 34 ALVGPNGAGKTTLLRMVAGDL 54
                  689**********99877665 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.043
  RNA_helicase   2 wlyGpsgeGKStlakeLak 20 
                    + G++g+GKS++ + La+
    KIR63004.1 365 AVLGANGTGKSHFLRLLAR 383
                   588***********99986 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00036      0.21      19      37 ..      32      50 ..      26      53 .. 0.91
   2 ?   -2.3   0.5      0.95   5.5e+02     303     357 ..     255     312 ..     253     314 .. 0.59
   3 ?    1.0   0.0       0.1        58      13      37 ..     357     381 ..     355     382 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00036
     DUF3584 19 htnieGtNaaGKTtLlrLi 37
                ++ ++G N+aGKTtLlr++
  KIR63004.1 32 KVALVGPNGAGKTTLLRMV 50
                57899************97 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.95
     DUF3584 303 lkeaidelnqelsaakaklaakese...lealeeqkkkyedadieklkadldqlpsir 357
                 ++ea+  ++ +l +++  +++ +++   l ++++qk +y+d  +++++a + +l +++
  KIR63004.1 255 WHEARVVRHARLDELRRRWDEEHQKlrdLVLMYKQKAAYNDGLASRYQAAQTRLRKFE 312
                 5555555666666666666654444000445677777777777777777777666554 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.1
     DUF3584  13 eldldghtnieGtNaaGKTtLlrLi 37 
                 e+   +++ + G+N+ GK   lrL+
  KIR63004.1 357 EIWFGDRVAVLGANGTGKSHFLRLL 381
                 5566789****************97 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0018         1      19      43 ..      33      58 ..      18      64 .. 0.83
   2 ?   -0.4   0.0         1   5.9e+02      22      38 ..     367     383 ..     363     389 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0018
  Zeta_toxin 19 illgGqpGAGKselaellkdele.rq 43
                + l+G  GAGK++l+++++ +l  r 
  KIR63004.1 33 VALVGPNGAGKTTLLRMVAGDLPvRS 58
                6799**************99887544 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1
  Zeta_toxin  22 gGqpGAGKselaellkd 38 
                  G+ G GKs+ ++ll++
  KIR63004.1 367 LGANGTGKSHFLRLLAR 383
                 5999*******999876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0091       5.3       2      20 ..      33      51 ..      32      58 .. 0.86
   2 ?    3.5   0.1      0.11        66       3      21 ..     365     383 ..     363     386 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0091
                EEEE--SSSSHHHHHHHGG CS
       AAA_5  2 vlLvGppGtgKselaerla 20
                v LvGp G gK++l + +a
  KIR63004.1 33 VALVGPNGAGKTTLLRMVA 51
                77************99876 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.11
                 EEE--SSSSHHHHHHHGGG CS
       AAA_5   3 lLvGppGtgKselaerlaa 21 
                  ++G+ GtgKs + + la+
  KIR63004.1 365 AVLGANGTGKSHFLRLLAR 383
                 579***********99986 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0064       3.7      32      55 ..      29      52 ..      23      58 .. 0.82
   2 ?    1.6   0.0      0.29   1.7e+02      34      51 ..     362     379 ..     348     387 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0064
       AAA_7 32 nkkpvllvGptGtGKtviikdllk 55
                ++ +v lvGp G GKt++++ +  
  KIR63004.1 29 EGAKVALVGPNGAGKTTLLRMVAG 52
                67899************9987665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.29
       AAA_7  34 kpvllvGptGtGKtviik 51 
                   v + G  GtGK+  ++
  KIR63004.1 362 DRVAVLGANGTGKSHFLR 379
                 678899********8876 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.8   0.00082      0.47      11      56 ..      12      57 ..       5     153 .. 0.66
   2 ?   -2.8   0.0       4.3   2.5e+03      31      47 ..     363     379 ..     361     383 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00082
                -SHHHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCT CS
        MeaB 11 erpeakellerllakaGraqvvGltGvPGaGkstlvealglelrrr 56
                  p+ +el++ ++ + G+  +v l G  GaGk tl+  ++  l  r
  KIR63004.1 12 ILPDGRELFTDVSFRVGEGAKVALVGPNGAGKTTLLRMVAGDLPVR 57
                568899******************************9998777544 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.3
                 EEEEEE-TTSSHHHHHH CS
        MeaB  31 vvGltGvPGaGkstlve 47 
                 +v + G  G+Gks ++ 
  KIR63004.1 363 RVAVLGANGTGKSHFLR 379
                 78899999****98875 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00086       0.5       4      20 ..      34      50 ..      31      59 .. 0.87
   2 ?   -2.4   0.0       5.2     3e+03      39      59 ..     223     243 ..     221     245 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00086
                EEEESTTCCHHHHHHHH CS
        cobW  4 vltGflGsGKTtLlnhl 20
                 l+G+ G+GKTtLl+ +
  KIR63004.1 34 ALVGPNGAGKTTLLRMV 50
                699***********976 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.2
                 CHCCCCCCHCCCT.EEEETTT CS
        cobW  39 vsiDaellretgveivelenG 59 
                 vs+D+ell++t++ +v +e G
  KIR63004.1 223 VSHDRELLARTADRVVAVEGG 243
                 799********9999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 3873.60
//
Query:       KIR63005.1  [L=314]
Description: aldo/keto reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-66  224.8   0.0    1.4e-66  224.6   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.6   0.0   8.1e-71   1.4e-66       2     292 ..      16     313 ..      15     314 .] 0.95

  Alignments for each domain:
  == domain 1  score: 224.6 bits;  conditional E-value: 8.1e-71
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-..TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.....--SSSTTSSSS-HHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevY..gkgqseellGealkksrkkreeviiatKv.....dlrdaeiksglskeniresle 91 
                   +g+G +++g   + + +   +++++al+aGi++fDtA++Y   +g seellG+alk    +r+ev++atK      + + a+  +++s+  i +++e
    KIR63005.1  16 VGIGCNNFGR--KLDLDGTRAVVDAALDAGITLFDTADIYgePQGASEELLGQALKG---RRDEVVLATKFgmdmhGANGADFGARGSRRYIARAVE 107
                   799******8..8***************************7778*************...***********9999988889999************* PP

                   HHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT- CS
  Aldo_ket_red  92 eslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynllreleeegllelckkkgv 184
                   +sl+rLgtd++Dl+++H+pdp +p i e+l+al++lv++Gk+r++G Snf+ +q+  a    ++ + +++v+ q++y+ll++  e++++++c+  g+
    KIR63005.1 108 ASLRRLGTDHIDLYQMHEPDPGTP-IDETLAALDDLVRAGKVRYLGNSNFAGWQIADAdwiaSSNGHTRFVSAQNHYSLLERGVEAEVIPACERFGL 203
                   ************************.**************************77777677889999******************************** PP

                   EEEEBSTTGGGTTGTTTSS---SSSCCC-------..TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG- CS
  Aldo_ket_red 185 pliaysplggGlltgkyqseedkedkeprkdlkrd..ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalel 279
                   ++ ++ pl++Glltgkyq+ e  + +++ +  +r      + + d++e++ ++a+e+g ++ q+a+  + ++pav++vi ga+++eq+++n++a ++
    KIR63005.1 204 GMLPFFPLANGLLTGKYQRGEAAPAGSRLSGGGRYaeRLAAARWDTIEAIGAYAAERGLTMLQVAIGGLAARPAVTSVIAGATTPEQVRANAGAGAW 300
                   ***********************999888877777976677788***************************************************** PP

                   ---HHHHHHHHHH CS
  Aldo_ket_red 280 klseeevaeldel 292
                   + +++++a+ld++
    KIR63005.1 301 QPDDDDLAALDAI 313
                   ***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2398.31
//
Query:       KIR63006.1  [L=182]
Description: hypothetical protein TK50_19020 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.033   13.9   0.0      0.065   13.0   0.0    1.5  1  DUF2914   Protein of unknown function (DUF2914)
      0.074   14.0   0.8        1.4    9.9   0.8    2.4  1  DUF756    Domain of unknown function (DUF756)


Domain annotation for each model (and alignments):
>> DUF2914  Protein of unknown function (DUF2914)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.2e-06     0.065      18      49 ..      76     104 ..      59     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.2e-06
     DUF2914  18 ielsisreegyRtysskqllpeseGkWrVeVe 49 
                 ++l+   +eg   yss  ll  s+G+WrV+V+
  KIR63006.1  76 VQLEM-AGEGQGFYSSGPLL--SPGRWRVTVT 104
                 45555.66777789******..*********8 PP

>> DUF756  Domain of unknown function (DUF756)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.8   0.00015       1.4       5      47 ..      19      68 ..      15     154 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00015
      DUF756  5 lpYdlaa...gnlrltlrNtgkaaa.rftVydnaka...pwtytveagdq 47
                lp  +aa   g+l+l+   +g++++ +++Vy+  ++   p ++t++a+ +
  KIR63006.1 19 LPAGPAAahgGKLKLSVGGDGAGGVtVLAVYSDGHRldqPVRLTLTAKGE 68
                55555556669**********97774789***999899987777765543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1219.55
//
Query:       KIR63007.1  [L=1939]
Description: PKD domain-containing protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-85  284.8   1.9    1.2e-84  283.8   1.9    1.6  1  ThuA       Trehalose utilisation
    1.4e-43  149.5   0.1    8.4e-41  140.4   0.1    2.4  2  GSDH       Glucose / Sorbosone dehydrogenase
    3.8e-31  108.2   0.0    6.7e-18   65.0   0.0    2.6  2  DUF1349    Protein of unknown function (DUF1349)
    1.6e-28   99.8   0.0    1.8e-14   53.9   0.0    3.0  3  GH43_C2    Beta xylosidase C-terminal Concanavalin A-like dom
      3e-26   91.0  36.0    4.4e-16   58.5   2.5    5.9  4  PKD        PKD domain
    3.6e-21   75.7   0.8    3.6e-21   75.7   0.8    7.3  7  CBM_6      Carbohydrate binding module (family 6)
    8.5e-06   25.7   1.2      0.013   15.4   0.1    3.2  2  CHB_HEX_C  Chitobiase/beta-hexosaminidase C-terminal domain
    3.2e-05   24.0   0.2    0.00031   20.8   0.2    2.8  1  DUF5010_C  DUF5010 C-terminal domain
    8.5e-05   22.8   1.0       0.54   10.6   0.0    4.7  3  HYR        HYR domain
    0.00052   20.3   1.1         20    5.4   0.0    5.3  6  DUF4625    Domain of unknown function (DUF4625)
    0.00059   20.1   4.7        9.1    6.6   0.1    6.1  5  Big_3_2    Bacterial Ig-like domain
     0.0029   17.3   3.8        6.7    6.3   0.1    4.6  4  Big_3_3    Bacterial Ig-like domain (group 3)
  ------ inclusion threshold ------
      0.051   14.0   0.1        8.7    6.8   0.0    3.3  3  DUF4399    Domain of unknown function (DUF4399)
      0.078   12.7   3.6        1.9    8.3   0.1    3.0  3  PKD_3      PKD-like domain
       0.23   11.9   0.9         17    6.0   0.0    4.1  3  Cadherin   Cadherin domain
       0.28   11.3   9.0         44    4.2   0.0    6.4  9  BiPBP_C    Penicillin-Binding Protein C-terminus Family
       0.28   11.3   2.1         52    4.0   0.0    4.1  4  DUF1905    Domain of unknown function (DUF1905)


Domain annotation for each model (and alignments):
>> ThuA  Trehalose utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.8   1.9   1.1e-87   1.2e-84       2     208 ..      60     270 ..      59     272 .. 0.98

  Alignments for each domain:
  == domain 1  score: 283.8 bits;  conditional E-value: 1.1e-87
                 EEEEE-..-.SHHHH-...HHHHHH-HHHT-EEEEETTS.G--HHHHHT-SEEEEE-G..GS-HHHHHH.HHHHHHTT-EEEEEGGGGS.....HHHH. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThuA   2 VLvfsgtagerhdsieaaieaieklgkengfevdatedaavfteenLaqydvvvflstegevldaaqeaalqryveaGgGfvglhsAadaeerskwfsg 100
                 VLvfs+ta++rhd i+a+i+ai+klg++ngf+vd+ted a+f+++nLa+y++v++lst+g+vl+a+q+aa++ry++aGgG++g+h+A+d+e++++w+++
  KIR63007.1  60 VLVFSKTAAFRHDAIPAGIAAIQKLGTDNGFTVDTTEDGAAFNDANLAKYQAVIWLSTTGDVLNADQQAAFERYIKAGGGYAGVHAASDTEYDWPWYGK 158
                 9************************************************************************************************** PP

                 HH-SEEEEET............TSGGGTT--.SEEEEEEEEE-S---SE...EEEEE...................ETE...TTEEEEEE----TTSGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThuA 101 LiGarfvghppvqeatvkvedrshpateglpeewertdewYnfkpnprg.vhvlatvdestydp....ngadhPiaWcreydgkGrvFytalGhteesy 194
                 L+Ga+f++hp++q+atvkved++hp+t+ lp++w+r dewYnf++npr+ vhvla++de++y+p    +gadhP+aWc++ydg Gr++yt+ Ght++sy
  KIR63007.1 159 LVGAYFNNHPANQQATVKVEDHAHPSTATLPDKWSRFDEWYNFRTNPRSnVHVLASLDEKSYTPgsgaMGADHPTAWCQDYDG-GRAWYTGGGHTQQSY 256
                 ***************************************************************77789***************.*************** PP

                 G-HHHHHHHHHHHH CS
                 xxxxxxxxxxxxxx RF
        ThuA 195 eepefrkhllgglk 208
                 +epef++hllgg++
  KIR63007.1 257 QEPEFLAHLLGGIR 270
                 ************97 PP

>> GSDH  Glucose / Sorbosone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.4   0.1     8e-44   8.4e-41       2     236 ..     298     566 ..     297     581 .. 0.86
   2 !    6.4   0.0    0.0044       4.6     266     323 ..     635     695 ..     625     699 .. 0.82

  Alignments for each domain:
  == domain 1  score: 140.4 bits;  conditional E-value: 8e-44
                 S-EEEEEE-TTS-EEEEETTTEEEEEE.TTEE.EEEEE-..----STT-SEEEEEE-TTTTTS-EEEEEEEE-...TTSSEEEEEEEEE-SS..-EEEE CS
        GSDH   2 ehPwslaflpdgrlLvtersGrlrlvkadgklkepiagvp.evvakgqgGlldvalhpdfaenrlvYltyaeaeeekggagtavararlsedeaaledl 99 
                 ++P++l ++pdgr++ +er+Gr++++k d +   +++ +  +v++ +++Gll++ l+pdfa+n+++Yl+ya    ++gg ++ ++r+++++d+     +
  KIR63007.1 298 NNPMELDIAPDGRVFYAERDGRVQIIKPDTSN--TVTATKlDVFTGNEDGLLGLRLDPDFATNKWIYLYYA---PAGGGPRNYLSRFTVNGDAIDKATE 391
                 68*************************66665..6666666******************************...479999************9999999 PP

                 EEEEEEE---TT-------EEE-TTS-EEEE---TT-....GG.................GGG-TT-SSSEEEEE-..TTSS..B-TT-TTT.T-TTS- CS
        GSDH 100 evifrqepkvesgahfGsrlafgpdgtLfvtvGdrsk....re.................eaqdlsselGkilrln..kdGs..vpadnpfv.gkagak 172
                 +v+++ + + ++  h+G+ ++f++ g+L++++Gd+ +    ++                 +a ++++  Gk++r++  +dG+  +p++n f+ g+a+ +
  KIR63007.1 392 KVVLQVDTQRNTCCHAGGSMTFDSKGNLYLATGDNTNpfesNAftpideragrqdydaqrSAGNTNDLRGKVIRIHpeDDGTytIPTGNLFApGTAKTR 490
                 ************************************987661155566667777887777888999*********9778895449******96678999 PP

                 TTEEEE--SCE---EE-TTT--EEEEEE--SSS...........EEEEEE-TT-B--TTT-S.......S-..... CS
        GSDH 173 peiwsyGhRnpqGlaldpdtgeLwesEhGprgg...........DelnlieaGknYGWplvs.ygeeYsgkkiges 236
                 pei+ +G Rnp  + +d++t++L+  + Gp  +            e n++  ++nYGWp  + + + Y++ +++++
  KIR63007.1 491 PEIFGMGFRNPFRIGVDQKTDTLYVADYGPDANsanpdrgpeglVEWNIVATAGNYGWPYCTgNNKAYNDYTFPNG 566
                 ******************************999999988888888**************98823455766655554 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0044
                 .....TTEEEEEETTTTEEEEEEEEEEEE.EEEEEEEEESS-.-EE..EEEE-TTS-EEEEE CS
        GSDH 266 fpe.wkgdllvggLksqsllrleldegek.vveeerlleelgeriR..dVeqgpdGalyvlt 323
                 +p+ ++g++l+g  ++++++ +++++++k + + ++ll+ ++  +R  d e gpdGaly+++
  KIR63007.1 635 WPAyYDGKALLGEWNQSKMYTMQVSQDGKsLIDINQLLTGMT-MVRpmDFEFGPDGALYLIE 695
                 554279******************65544499999*998888.788557899*******985 PP

>> DUF1349  Protein of unknown function (DUF1349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   2.6e-13   2.7e-10      14     158 ..    1183    1324 ..    1172    1345 .. 0.75
   2 !   65.0   0.0   6.3e-21   6.7e-18       7     176 ..    1377    1551 ..    1372    1553 .. 0.85

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 2.6e-13
                  SEEEEE--TT--EEESTTT--EEE--EEEEEEESS-EEEEEEEEE---STT-EEEEEEEEETTEEEEEEEEE-SSSEEEEEEEEESSE..EEEEEE- CS
     DUF1349   14 dsleittepktDfWrrthygfrrdnapflltevagdftaevkvkgefkelyDqaGlmlrvdeenWlKagieyndgaprlgsVvtngys..Dwsvspl 108 
                  +sl++ t +  D++ +t+      +  +l+ +++g ++a++kv++  ++ y+qaGl+++ d++n++K+ + y+ ++    +  t g+     + +  
  KIR63007.1 1183 GSLRLPT-ASGDLYGTTNGA----TNLVLQPAPSGAWQATTKVTLPVTANYQQAGLLIYGDDDNYAKLDLLYSGSRRVEFIRETAGSPrnEGADATA 1274
                  5555554.566777777774....777888999999************************************7776666666666665334444443 PP

                  -SB.TTSEEEEEEEETTEEEEEEESSSS---EE.EEEE--S-S-EEEEEEE CS
     DUF1349  109 psevskevwlrlsrrgddlaieysldgenwkll.RlfhldadeevkvGvya 158 
                  + +  +++wlrl+ +g+ l++ +s+dg++++ + R + l+  ++ ++G++a
  KIR63007.1 1275 APA-GDSIWLRLTSDGTNLTAGMSADGTTFTPVgRSAALAGITNPRIGLFA 1324
                  334.89***********************9865366666665666666666 PP

  == domain 2  score: 65.0 bits;  conditional E-value: 6.3e-21
                  EEEE-.SSEEEEE--TT--EEESTTT--EEE--EEEEEEESS-EEEEEEEEE-.--STT-EEEEEEEEETTEEEEEEEEE.-SSSEEEEEEEEE.SS CS
     DUF1349    7 sveeseddsleittepktDfWrrthygfrrdnapflltevagdftaevkvkge.fkelyDqaGlmlrvdeenWlKagiey.ndgaprlgsVvtn.gy 100 
                   +++ ++++l+i++ pk D++ + ++g    +  +l+t+++gd+t+e+kv+g+   e+y+qaGl++++d++n++K+ + + n+  ++++  +   + 
  KIR63007.1 1377 ATYRVTGGALQIDV-PKGDIYGTGNTGP---TNFILQTAPSGDWTLETKVDGSlLAEQYQQAGLIVHADDDNYVKFDFIVdNQAGQTVSRRIEFrSE 1469
                  445556899****7.89*********93...334666****************8899***********************99999****99999555 PP

                  EEEEEEE--S....B..TTSEEEEEEEETTEEEEEEESSSS---EEEEEE-.-S-S-EEEEEEEE-SS-S.--EEEEEEEEEE CS
     DUF1349  101 sDwsvsplps....ev.skevwlrlsrrgddlaieysldgenwkllRlfhl.dadeevkvGvyacsPkre.gfevtFsefele 176 
                      v++ p+    ++ s  ++lr+ r+g+d++  ys+dg++w++l ++   + + + k+G++    + + + +++F+ f+l+
  KIR63007.1 1470 VGGTVQN-PQpevtNLtSGVWHLRVARTGNDFTGSYSADGQEWTTLGTVSNtAVGATPKIGLFTLGANAAtSKTASFDYFRLS 1551
                  5666665.44468766788899************************9888867779999999999888854889999999886 PP

>> GH43_C2  Beta xylosidase C-terminal Concanavalin A-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   1.7e-17   1.8e-14       1     201 [.    1156    1343 ..    1156    1344 .. 0.86
   2 !   42.7   0.0   4.9e-14   5.2e-11       1     200 [.    1355    1549 ..    1355    1551 .. 0.78
   3 ?   -3.5   0.0       6.8   7.1e+03      98     127 ..    1619    1648 ..    1614    1700 .. 0.58

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 1.7e-17
     GH43_C2    1 rddFdsdkLglq.WqwlrnPkdedwyslterpgyLrLkgre.sl..sskeapsllarRqqafsftattklefepekegeeAGLvvyqneyhyyslev 93  
                  +ddF ++ L+ + W   r    +++ys+  + g LrL +++ +l  + + a++l+++  ++   +attk+++  +++ ++AGL +y+++++y++l +
  KIR63007.1 1156 SDDFLGTSLDKNrWTVVRE---NQLYSV--SGGSLRLPTASgDLygTTNGATNLVLQPAPSGAWQATTKVTLPVTANYQQAGLLIYGDDDNYAKLDL 1247
                  6999999999744888888...568899..9********966663366789********************************************** PP

     GH43_C2   94 tkdekgkrvlrlvkadngeakeelkeekvplqtevkevyLrleveedkakfsysydgkeweeigeeldgtllsdefaeggFtGafvGlfatgn.gke 189 
                   ++  g+r +++++ ++g +  e + +        ++++Lrl+ +++++++ +s dg +++++g        s      g t  ++Glfa +   ++
  KIR63007.1 1248 LYS--GSRRVEFIRETAGSPRNEGADATAAPA--GDSIWLRLTSDGTNLTAGMSADGTTFTPVGR-------SAAL--AGITNPRIGLFALNGgTTA 1331
                  976..*************99887555433333..479***************************9.......5555..59999********994455 PP

     GH43_C2  190 ssgyAdFdwfey 201 
                      A Fd+f++
  KIR63007.1 1332 PVVDAAFDFFQV 1343
                  56689****987 PP

  == domain 2  score: 42.7 bits;  conditional E-value: 4.9e-14
     GH43_C2    1 rddFdsdkLglq.WqwlrnPkdedwyslterpgyLrLkgr..e..slsskeapsllarRqqafsftattklefepek.egeeAGLvvyqneyhyysl 91  
                  +d+F ++ L+ + W+ + + +    y++    g L++     +     ++  ++++++  ++ + t +tk++ +  + + ++AGL+v  ++++y+++
  KIR63007.1 1355 SDEFGGTALDKCrWNAILRED-AATYRV--TGGALQIDVPkgDiyGTGNTGPTNFILQTAPSGDWTLETKVDGSLLAeQYQQAGLIVHADDDNYVKF 1448
                  689999999875599888866.444588..66777766652233455667789*******************998872569**************** PP

     GH43_C2   92 evtkdekgkrvlrlvkadngeakeelkeekvplqtevkev.yLrleveedkakfsysydgkeweeigeeldgtllsdefaeggFtGa..fvGlfatg 185 
                   +  d++ ++ ++ +   + e+  ++++++ ++++ ++ v +Lr+   +++ + sys dg+ew+++g       +s+  a    +Ga  ++Glf+ g
  KIR63007.1 1449 DFIVDNQAGQTVSRRIEFRSEVGGTVQNPQPEVTNLTSGVwHLRVARTGNDFTGSYSADGQEWTTLGT------VSNT-A----VGAtpKIGLFTLG 1534
                  9999989999998887777777777777666666544444258888888888889999*********8......3433.3....566558******* PP

     GH43_C2  186 ngkessgyAdFdwfe 200 
                   + ++s+ A Fd+f+
  KIR63007.1 1535 ANAATSKTASFDYFR 1549
                  **************8 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 6.8
     GH43_C2   98 kgkrvlrlvkadngeakeelkeekvplqte 127 
                  +g++++r++++d+    e+ k+ +v+++++
  KIR63007.1 1619 DGSHEVRFRSTDKAGNVETAKKVNVKIDGT 1648
                  567777777777766555556666666553 PP

>> PKD  PKD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   2.5   4.2e-19   4.4e-16       2      69 ..     726     793 ..     723     795 .. 0.94
   2 !   41.7   7.2   7.4e-14   7.8e-11       3      68 ..    1069    1134 ..    1065    1137 .. 0.87
   3 ?   -3.6   5.9        10   1.1e+04       8      70 ..    1560    1636 ..    1554    1637 .. 0.75
   4 !    6.9   0.1    0.0051       5.4      53      70 ..    1794    1811 ..    1746    1812 .. 0.64

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 4.2e-19
                 E---S--BSSEEEEEEEES....-SS-SEEEEE--SS--EEEEETTEEEEEE-SSEEEEEEEEEE-SS-EE CS
         PKD   2 sasptvlvpgatvaftaav...pdganvtysWdfgdgsvvqvlseptvthtYlspGeYeVtvtasnavgsa 69 
                 sa pt+ ++  tv+f++a    pdg  +tysW fgd   +q+++e ++thtY+++G+Y +++t++n++g++
  KIR63007.1 726 SADPTSGPAPLTVNFSSAGsrdPDGGTLTYSWKFGD---GQTSTEANPTHTYATAGDYIAQLTVTNPAGRT 793
                 5669999*********9999****************...*****************************986 PP

  == domain 2  score: 41.7 bits;  conditional E-value: 7.4e-14
                  ---S--BSSEEEEEEEES....-SS-SEEEEE--SS--EEEEETTEEEEEE-SSEEEEEEEEEE-SS-E CS
         PKD    3 asptvlvpgatvaftaav...pdganvtysWdfgdgsvvqvlseptvthtYlspGeYeVtvtasnavgs 68  
                  a+pt   +  tv+f ++    + ++++ty Wdfgd   + + s   +thtY+ pG++++t+t+++a+g+
  KIR63007.1 1069 ATPTTGTAPVTVTFDGTAtdaEGDTPLTYAWDFGD---GKTASTLDATHTYTVPGTFTATLTVTDARGA 1134
                  557777788888888888667779***********...999*************************997 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 10
                  -BSSEEEEEEEES..-SS-SEEEEE--SS.......--EEEEETTEEEEEE-S......SEEEEEEEEEE-SS-EEE CS
         PKD    8 lvpgatvaftaav.pdganvtysWdfgdg.......svvqvlseptvthtYls......pGeYeVtvtasnavgsat 70  
                  +v++atv  t +  +  a+vt +    d+       s+  +l + t+   Y++       G++eV+ + ++ +g++ 
  KIR63007.1 1560 PVTTATVSGTPTEgWHTAPVTVTLAAADEaggsgvaSTEYQLDGATTWTAYTEpvqvtgDGSHEVRFRSTDKAGNVE 1636
                  5677777777777888888888888888888887776667777777777777766666699*******999999986 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0051
                  SEEEEEEEEEE-SS-EEE CS
         PKD   53 pGeYeVtvtasnavgsat 70  
                   G++e+tvta++ +g++t
  KIR63007.1 1794 LGQHELTVTATDKAGNST 1811
                  59**************98 PP

>> CBM_6  Carbohydrate binding module (family 6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       4.5   4.8e+03      30      54 ..     552     575 ..     545     581 .. 0.82
   2 ?    1.0   0.1      0.46   4.8e+02      44      98 ..     777     835 ..     761     843 .. 0.66
   3 !   75.7   0.8   3.4e-24   3.6e-21       9     123 ..     937    1052 ..     931    1054 .. 0.87
   4 ?   -2.1   0.5       4.3   4.6e+03      48      88 ..    1064    1102 ..    1058    1140 .. 0.55
   5 ?   -1.8   0.1       3.3   3.5e+03      70      97 ..    1119    1146 ..    1110    1148 .. 0.89
   6 !    6.7   2.6    0.0079       8.4      32     102 ..    1606    1683 ..    1574    1691 .. 0.76
   7 ?    2.2   0.3       0.2   2.1e+02      29      71 ..    1690    1737 ..    1687    1805 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.5
                 TT-EEEEEEEEESSTEEEEEEEEEE CS
       CBM_6  30 nGdwlaYkdvdfgsggaysvearva 54 
                 +G++ aY+d+ f++g++  ++++ a
  KIR63007.1 552 TGNNKAYNDYTFPNGPS-GAKFNCA 575
                 79999*********999.6776666 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.46
                 TEEEEEEEEEEESSSE...EEEEEEESSTTSSEEEEEEE---SSTTEE...EEEEEEEEE- CS
       CBM_6  44 ggaysvearvasgaag...gsielrldsatgtlvgtvsvpstggwqty...vtvsanvtlp 98 
                 +g+y ++  v++ a+    +++ + ++   +++  t+++p+ gg+ ++    + + +vt+p
  KIR63007.1 777 AGDYIAQLTVTNPAGRtavANVPVTVGN--TAPTVTIEFPPNGGFFEWgdqIKYTIKVTDP 835
                 5555555555555555555777888887..7777788888888888885554455555555 PP

  == domain 3  score: 75.7 bits;  conditional E-value: 3.4e-24
                  ES-EEEE--S.TTTSEEEE---TT-EEEEEEEEESSTEEEEEEEEEEESSSEEEEEEEESSTTSSEEEEEEE---SSTTEEEEEEEEEEE-S.EEEE CS
       CBM_6    9 sgvslekata.agggkavgyinnGdwlaYkdvdfgsggaysvearvasgaaggsielrldsatgtlvgtvsvpstggwqtyvtvsanvtlpt.Gvhd 103 
                   gv+ e++t+ agg++++g+i++Gdw +     +      s+++r+as+++gg+ie+r +  +g+lv+t++vp tggwq++v+v+a vt p+ G+  
  KIR63007.1  937 PGVQKETTTDtAGGNQNIGFIEDGDWWSLAPASLTGID--SIRFRAASSVQGGRIEVRSGTVDGPLVATANVPGTGGWQQFVDVTAPVTGPAeGT-- 1029
                  69999*****777*****************87765555..599************************************************8665.. PP

                  EEEEEECSST...---EEEEEEE CS
       CBM_6  104 lylvftggae...ylfnldwfkf 123 
                  ly+ ++  a+    lfn++w+ f
  KIR63007.1 1030 LYFLAKDPAGgtgSLFNVNWMDF 1052
                  6666665555569********99 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 4.3
                  EEEEEEEESSSEEEEEEEESSTTSSEEEEEEE---SSTTEE CS
       CBM_6   48 svearvasgaaggsielrldsatgtlvgtvsvpstggwqty 88  
                  +v+a ++ +++++ +++  d+  +   g++++  t  w+  
  KIR63007.1 1064 QVSATATPTTGTAPVTVTFDGTATDAEGDTPL--TYAWDFG 1102
                  55666666666666666666644444443333..5555554 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 3.3
                  TSSEEEEEEE---SSTTEEEEEEEEEEE CS
       CBM_6   70 tgtlvgtvsvpstggwqtyvtvsanvtl 97  
                   gt  +t++v+   g + yvtv  +v++
  KIR63007.1 1119 PGTFTATLTVTDARGAKAYVTVPVKVEA 1146
                  689999****************999976 PP

  == domain 6  score: 6.7 bits;  conditional E-value: 0.0079
                  -EEEEEE.EEESSTEEEEEEEEEEESSSE....EEEEEEESSTTSSEEEEEEE--.-SSTTEE..EEEEEEEEE-SEEE CS
       CBM_6   32 dwlaYkd.vdfgsggaysvearvasgaag....gsielrldsatgtlvgtvsvps.tggwqty..vtvsanvtlptGvh 102 
                   w+aY++ v++  +g+ +v++r + +a++     ++ +++d+ t ++ + +  p+ + gw       v ++ ++ +Gv+
  KIR63007.1 1606 TWTAYTEpVQVTGDGSHEVRFRSTDKAGNvetaKKVNVKIDG-TAPVSSAAFAPAnDDGWHAGtvPVVITSTDAGSGVK 1683
                  599**988****************999999999*********.666665555566699999863323333344444555 PP

  == domain 7  score: 2.2 bits;  conditional E-value: 0.2
                  -TT-EEEEEE.EEESSTEEEEEEEEEEESSSE....EEEEEEESSTTS CS
       CBM_6   29 nnGdwlaYkd.vdfgsggaysvearvasgaag....gsielrldsatg 71  
                  + G+w+aY+  v++  +g+ ++ +r++ +a++     s  +++d+ + 
  KIR63007.1 1690 DGGAWTAYTTpVEVTGDGTHELLYRATDAAGNveslKSAVVKIDGTKP 1737
                  78******987********99999999998888666666688888333 PP

>> CHB_HEX_C  Chitobiase/beta-hexosaminidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.3e-05     0.013      37      71 ..    1597    1633 ..    1593    1637 .. 0.84
   2 !    7.4   0.0    0.0039       4.1      36      72 ..    1684    1721 ..    1681    1725 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
   CHB_HEX_C   37 ieYsldggetwqkytayepvavsg....kvklrsvsadg 71  
                   eY+ldg +tw++yt  epv+v+g    +v +rs++++g
  KIR63007.1 1597 TEYQLDGATTWTAYT--EPVQVTGdgshEVRFRSTDKAG 1633
                  79*************..*****99997777777777666 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0039
   CHB_HEX_C   36 tieYsldggetwqkytayepvavsg....kvklrsvsadgk 72  
                  ++e+sldgg+ w++yt  +pv+v+g    ++  r+++a+g+
  KIR63007.1 1684 KLEWSLDGGA-WTAYT--TPVEVTGdgthELLYRATDAAGN 1721
                  5799***999.*****..9***9998777788888888875 PP

>> DUF5010_C  DUF5010 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2   2.9e-07   0.00031       7      84 ..     939    1021 ..     934    1031 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.9e-07
   DUF5010_C    7 ikk..tdDv.nggwnvtsteaGewlewkeipfkaGavtlkvryattkeaakvrfvi...dgtagpsvelpaTgglqewetvdag 84  
                  ++k  t+D+ +g+ n++ +e G+w       +  G   +++r a++ ++ ++ +     dg   ++ ++p Tgg+q++++v a 
  KIR63007.1  939 VQKetTTDTaGGNQNIGFIEDGDWWSLAPASLT-GIDSIRFRAASSVQGGRIEVRSgtvDGPLVATANVPGTGGWQQFVDVTAP 1021
                  555568888677789*********888877777.999************9999875222666677889***********99875 PP

>> HYR  HYR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.034        36      51      80 ..    1614    1644 ..    1598    1645 .. 0.78
   2 ?    1.9   0.0      0.28     3e+02      57      74 ..    1707    1724 ..    1698    1730 .. 0.86
   3 !   10.6   0.0   0.00051      0.54      41      78 ..    1779    1816 ..    1733    1821 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.034
         HYR   51 GdsFpvGsttVtyvaeDesgnea.sCkFtVt 80  
                   +    Gs++V++  +D++gn +   k++V+
  KIR63007.1 1614 VQVTGDGSHEVRFRSTDKAGNVEtAKKVNVK 1644
                  5555669**************9855567766 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.28
         HYR   57 GsttVtyvaeDesgneas 74  
                  G+++  y a+D++gn +s
  KIR63007.1 1707 GTHELLYRATDAAGNVES 1724
                  89*************765 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00051
         HYR   41 aalvsrtaqpGdsFpvGsttVtyvaeDesgneasCkFt 78  
                  +   s t+q   ++p G+++ t +a+D++gn+ s +++
  KIR63007.1 1779 TTYASGTLQALYELPLGQHELTVTATDKAGNSTSSTVR 1816
                  44445555555689******************976654 PP

>> DUF4625  Domain of unknown function (DUF4625)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       8.2   8.6e+03     104     123 ..     775     794 ..     770     802 .. 0.83
   2 ?    3.0   0.0      0.11   1.1e+02      12      73 ..     804     865 ..     793     896 .. 0.80
   3 ?    2.7   0.0      0.13   1.4e+02      69     129 ..    1087    1142 ..    1078    1145 .. 0.76
   4 ?   -0.1   0.0      0.94   9.9e+02     106     131 ..    1619    1645 ..    1598    1646 .. 0.81
   5 ?    1.5   0.0      0.32   3.4e+02     106     126 ..    1706    1726 ..    1695    1732 .. 0.79
   6 ?    5.4   0.0     0.019        20     105     128 ..    1793    1816 ..    1786    1820 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 8.2
     DUF4625 104 aeaGdYhlvirvtDasGnet 123
                 a+aGdY  +++vt  +G + 
  KIR63007.1 775 ATAGDYIAQLTVTNPAGRTA 794
                 899**********9999765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.11
     DUF4625  12 tekPvidllevsaepeeeevlkiGetlhfeaklsdnea....lasykvdihnnfDhhshsseakeg 73 
                 +++P++++     +p ++  ++ G++++  +k++d e+       +++++   +D+h+h  e++ g
  KIR63007.1 804 NTAPTVTIE----FPPNGGFFEWGDQIKYTIKVTDPEDgtidCDRVQLQVLLGHDEHAHPLEQHTG 865
                 689999999....9*********************7743322567777777899999998886544 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.13
     DUF4625   69 eakegekewsfeksydlsgskkeyelheeieiPadaeaGdYhlvirvtDasGneteesrei 129 
                  +++eg++++++  ++   +++++ ++++++++P     G +  +++vtDa G +  + + +
  KIR63007.1 1087 TDAEGDTPLTYAWDFGDGKTASTLDATHTYTVP-----GTFTATLTVTDARGAKAYVTVPV 1142
                  344468899999999778888899999999998.....667779********998877655 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.94
     DUF4625  106 aGdYhlvirvtDasGn.eteesreiki 131 
                  +G  ++ +r tD++Gn et +++++ki
  KIR63007.1 1619 DGSHEVRFRSTDKAGNvETAKKVNVKI 1645
                  6899999********945566777776 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.32
     DUF4625  106 aGdYhlvirvtDasGnetees 126 
                  +G  +l +r+tDa+Gn +  +
  KIR63007.1 1706 DGTHELLYRATDAAGNVESLK 1726
                  7999************87765 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.019
     DUF4625  105 eaGdYhlvirvtDasGneteesre 128 
                  + G+ +l++++tD++Gn+t   + 
  KIR63007.1 1793 PLGQHELTVTATDKAGNSTSSTVR 1816
                  56999*************987665 PP

>> Big_3_2  Bacterial Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.4   3.6e+03      91     109 ..     372     390 ..     360     398 .. 0.83
   2 ?   -1.3   0.0       2.4   2.5e+03      78     114 ..    1558    1595 ..    1513    1603 .. 0.69
   3 !    6.6   0.1    0.0087       9.1      95     122 ..    1619    1646 ..    1580    1647 .. 0.84
   4 ?    4.0   0.0     0.055        58      95     122 ..    1706    1733 ..    1648    1734 .. 0.79
   5 ?    5.2   0.0     0.024        25      98     118 ..    1797    1817 ..    1792    1822 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.4
     Big_3_2  91 PssldeeytlefeiyDkAG 109
                 P ++ + +t++ +++DkA 
  KIR63007.1 372 PRNYLSRFTVNGDAIDKAT 390
                 999999***********95 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.4
     Big_3_2   78 sipvasakksglfPss..ldeeytlefeiyDkAGNktei 114 
                  ++pv++a+ sg  P++     ++t+ + + D+AG + + 
  KIR63007.1 1558 AAPVTTATVSG-TPTEgwHTAPVTVTLAAADEAGGSGVA 1595
                  34567777777.777766677888888889999977655 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0087
     Big_3_2   95 deeytlefeiyDkAGNkteipsqkvvfD 122 
                  d+  +++f+ +DkAGN+++ ++ +v +D
  KIR63007.1 1619 DGSHEVRFRSTDKAGNVETAKKVNVKID 1646
                  678899************9988888877 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.055
     Big_3_2   95 deeytlefeiyDkAGNkteipsqkvvfD 122 
                  d+  +l  +++D+AGN+++++s  v +D
  KIR63007.1 1706 DGTHELLYRATDAAGNVESLKSAVVKID 1733
                  5666777899**********99999888 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.024
     Big_3_2   98 ytlefeiyDkAGNkteipsqk 118 
                   +l ++++DkAGN+t+ + + 
  KIR63007.1 1797 HELTVTATDKAGNSTSSTVRF 1817
                  578899*********986554 PP

>> Big_3_3  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.48     5e+02      23      50 ..     782     811 ..     765     845 .. 0.73
   2 ?    3.6   0.0     0.044        47      13      78 ..    1618    1681 ..    1608    1695 .. 0.76
   3 ?    3.6   0.0     0.045        48      11      71 ..    1703    1759 ..    1693    1780 .. 0.80
   4 !    6.3   0.1    0.0064       6.7     124     144 ..    1797    1817 ..    1794    1825 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.48
     Big_3_3  23 akdtfnnqvtksllst..ilvdntpPtvsi 50 
                 a+ t+ n++ ++   +  ++v nt+Ptv+i
  KIR63007.1 782 AQLTVTNPAGRTAVANvpVTVGNTAPTVTI 811
                 4445556555544443117899*******9 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.044
     Big_3_3   13 peGkynlvlaakdtfnnqvtksllstilvdntpPtvsisegkkisdgavvkglenlritladaldk 78  
                   +G++++ +  +d+ +n  t +   ++++d t+P+ s    ++ +d+    g + ++it +da   
  KIR63007.1 1618 GDGSHEVRFRSTDKAGNVETAKKV-NVKIDGTAPVSSA-AFAPANDDGWHAGTVPVVITSTDAGSG 1681
                  579999999999998886666655.9********9998.666777777778888888888887655 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.045
     Big_3_3   11 elpeGkynlvlaakdtfnnqvtksllstilvdntpPtvsisegkkisdgavvkglenlrit 71  
                     +G+++l   a+d+ +n   +++   +++d t Pt+ +   + i+dg +  + +++ri+
  KIR63007.1 1703 VTGDGTHELLYRATDAAGNVESLKSA-VVKIDGTKPTLLV---SGIADGQLYGDSQDVRIS 1759
                  5678999999999**99998877777.89**********9...778888888888888876 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0064
     Big_3_3  124 YtltvkaeDeagNaktkaskF 144 
                    ltv+a+D+agN + ++++F
  KIR63007.1 1797 HELTVTATDKAGNSTSSTVRF 1817
                  579*****************9 PP

>> DUF4399  Domain of unknown function (DUF4399)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.2   3.4e+03      45      70 ..     757     787 ..     723     801 .. 0.70
   2 ?    2.7   0.0      0.15   1.6e+02      16      76 ..    1069    1135 ..    1060    1146 .. 0.72
   3 ?    6.8   0.0    0.0082       8.7      48      81 ..    1782    1815 ..    1769    1821 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.2
     DUF4399  45 lHfgkgqtetele.....lppGkhtLqlqlg 70 
                   fg+gqt te +      ++G++  ql + 
  KIR63007.1 757 WKFGDGQTSTEANpthtyATAGDYIAQLTVT 787
                 5699***999876212223456666666555 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.15
     DUF4399   16 etentGhhhllvd..eeapeagepipaddqvlHfgkgqtetelelp.....pGkhtLqlqlgdaahvp 76  
                  +t++tG   ++v    +a++a+   p +     fg+g+t  +l+ +     pG++t +l + da++  
  KIR63007.1 1069 ATPTTGTAPVTVTfdGTATDAEGDTPLT-YAWDFGDGKTASTLDAThtytvPGTFTATLTVTDARGAK 1135
                  5666666666555447777777777777.6789*******999864444459*********9998754 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0082
     DUF4399   48 gkgqtetelelppGkhtLqlqlgdaahvplkpsv 81  
                    g  ++  elp G+h+L++   d+a+++ +++v
  KIR63007.1 1782 ASGTLQALYELPLGQHELTVTATDKAGNSTSSTV 1815
                  5677788889*****************9988664 PP

>> PKD_3  PKD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       4.9   5.1e+03      30      45 ..     146     161 ..     143     163 .. 0.79
   2 ?    8.3   0.1    0.0018       1.9      34      68 .]     754     788 ..     749     788 .. 0.94
   3 ?    4.3   0.1     0.031        33      21      67 ..    1080    1129 ..    1076    1130 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.9
       PKD_3  30 aenaafaWtieGkivs 45 
                 a + ++ W   Gk+v+
  KIR63007.1 146 ASDTEYDWPWYGKLVG 161
                 55667*********98 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0018
       PKD_3  34 afaWtieGkivsteptytfteeelgsyevtleven 68 
                 +++W+  +   ste++ t t  ++g+y  +l+v+n
  KIR63007.1 754 TYSWKFGDGQTSTEANPTHTYATAGDYIAQLTVTN 788
                 59*******************************98 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.031
       PKD_3   21 ltiaPtvenaenaa...faWtie.Gkivsteptytfteeelgsyevtleve 67  
                  +t+  t   ae+++   +aW    Gk  st  + t t ++ g+++ tl+v+
  KIR63007.1 1080 VTFDGTATDAEGDTpltYAWDFGdGKTAST-LDATHTYTVPGTFTATLTVT 1129
                  67777888899998899****994556655.777888899********986 PP

>> Cadherin  Cadherin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       2.3   2.4e+03      57      92 ..    1108    1144 ..    1105    1145 .. 0.68
   2 ?    0.4   0.0      0.84   8.9e+02      25      76 ..    1397    1443 ..    1382    1458 .. 0.84
   3 ?    6.0   0.0     0.016        17      64      90 ..    1793    1819 ..    1754    1821 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.3
                  STC-TTTS....SEEEEEEEEEECTGCCEEEEEEEEEEEE CS
    Cadherin   57 kpLdrEsq....geYeLtveatDesgspplsstttvtvtV 92  
                  + Ld  ++    g+++ t+ +tD+   ++  +++tv v+V
  KIR63007.1 1108 STLDATHTytvpGTFTATLTVTDA---RGAKAYVTVPVKV 1144
                  556665556666788888888888...4777777777777 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.84
                  TSTTTSEEEEEEECTTTTSEEEETTTTEEEESSTC-TTTSSEEEEEEEEEEC CS
    Cadherin   25 lgpnsrirysilegneggkFridtetgdlsttkpLdrEsqgeYeLtveatDe 76  
                   + n+ ++ +il++ ++g ++++t     ++  +L  E++++  L+v+a D 
  KIR63007.1 1397 GTGNTGPTNFILQTAPSGDWTLET-----KVDGSLLAEQYQQAGLIVHADDD 1443
                  67899999999***99****9999.....88888888999988888888886 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.016
                  S.SEEEEEEEEEECTGCCEEEEEEEEEE CS
    Cadherin   64 q.geYeLtveatDesgspplsstttvtv 90  
                    g++eLtv atD+ ++++ sst++  v
  KIR63007.1 1793 PlGQHELTVTATDK-AGNSTSSTVRFYV 1819
                  2699**********.7888888887776 PP

>> BiPBP_C  Penicillin-Binding Protein C-terminus Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       8.1   8.5e+03       6      29 ..     295     318 ..     292     323 .. 0.80
   2 ?   -1.8   0.0         3   3.2e+03      28      85 ..     730     794 ..     723     798 .. 0.60
   3 ?   -1.8   0.0       3.1   3.3e+03       8      21 ..     805     818 ..     801     827 .. 0.81
   4 ?   -3.2   0.0       8.6   9.1e+03       6      44 ..     946     986 ..     942    1003 .. 0.78
   5 ?    2.7   0.0      0.12   1.3e+02      44      87 ..    1094    1138 ..    1060    1140 .. 0.69
   6 ?   -3.1   0.0       7.9   8.3e+03      19      62 ..    1392    1434 ..    1382    1440 .. 0.69
   7 ?   -2.0   0.0       3.7   3.9e+03      67      86 ..    1615    1637 ..    1558    1645 .. 0.58
   8 ?    3.2   0.2     0.085        90      17      86 ..    1650    1724 ..    1634    1729 .. 0.72
   9 ?    4.2   0.0     0.042        44      51      89 .]    1777    1817 ..    1751    1817 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 8.1
     BiPBP_C   6 ssaasplrIafPadGailaldpdi 29 
                 s++++p+++   +dG +++ ++d 
  KIR63007.1 295 SNTNNPMELDIAPDGRVFYAERDG 318
                 567899999999*****9999874 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3
     BiPBP_C  28 dip.krqrlqlkarggea......plrWll.dgeplaetkrgrelawqpepGrhrLtvvDaaGrvd 85 
                  ++ ++  + ++ +g+++      +++W   dg+  +e+++ ++ a   +   ++Ltv++ aGr++
  KIR63007.1 730 TSGpAPLTVNFSSAGSRDpdggtlTYSWKFgDGQTSTEANPTHTYATA-GDYIAQLTVTNPAGRTA 794
                 455577777777777744477766666755577777444444443322.33346888888888876 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.1
     BiPBP_C   8 aasplrIafPadGa 21 
                 +a++++I+fP++G 
  KIR63007.1 805 TAPTVTIEFPPNGG 818
                 67899*******95 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 8.6
     BiPBP_C   6 ssaasplrIafPadGailaldpdip.krqrlqlkargg.ea 44 
                 ++a+++  I f++dG+   l+p +     ++ ++a+ + ++
  KIR63007.1 946 DTAGGNQNIGFIEDGDWWSLAPASLtGIDSIRFRAASSvQG 986
                 56677778999999999999999999999999999888555 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.12
     BiPBP_C   44 a.plrWll.dgeplaetkrgrelawqpepGrhrLtvvDaaGrvddv 87  
                  + ++ W   dg+   +t ++  +   p+  +++Ltv+Da+G+ + v
  KIR63007.1 1094 PlTYAWDFgDGKTA-STLDATHTYTVPGTFTATLTVTDARGAKAYV 1138
                  24555544577776.666666667777888899********97766 PP

  == domain 6  score: -3.1 bits;  conditional E-value: 7.9
     BiPBP_C   19 dGailaldpdipkrqrlqlkarggea.plrWlldgeplaetkrgr 62  
                  +G+i+   +    + ++ l+ +++ + +l+  +dg++lae  +++
  KIR63007.1 1392 KGDIYGTGNT--GPTNFILQTAPSGDwTLETKVDGSLLAEQYQQA 1434
                  4555555543..578888999999445899999999997765555 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 3.7
     BiPBP_C   67 qp.epGrhrLtv..vDaaGrvdd 86  
                  q  + G h+++   +D+aG+v++
  KIR63007.1 1615 QVtGDGSHEVRFrsTDKAGNVET 1637
                  33367888887777888888876 PP

  == domain 8  score: 3.2 bits;  conditional E-value: 0.085
     BiPBP_C   17 PadGailaldpdip.krqrlqlkarggea.....plrWlldgeplaetkrgrelawqp.epGrhrLtv..vDaaGrvdd 86  
                  P+  a +a+++d +  ++ +++ +   +a     +l+W ldg       ++ ++ ++  + G+h+L    +DaaG+v++
  KIR63007.1 1650 PVSSAAFAPANDDGwHAGTVPVVITSTDAgsgvkKLEWSLDGGAW----TAYTTPVEVtGDGTHELLYraTDAAGNVES 1724
                  66666666666666666666665555533356789*******998....555666666799*****6444*****9987 PP

  == domain 9  score: 4.2 bits;  conditional E-value: 0.042
     BiPBP_C   51 dgeplaetkrgrelawqpepGrhrLtv..vDaaGrvdd..vri 89  
                  dg+ +a+++ ++  +++   G+h+Ltv  +D+aG++++  vr+
  KIR63007.1 1777 DGTTYASGTLQALYELP--LGQHELTVtaTDKAGNSTSstVRF 1817
                  55555444444444444..46666666669******9966665 PP

>> DUF1905  Domain of unknown function (DUF1905)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.078        82      20      46 ..    1062    1087 ..    1055    1090 .. 0.86
   2 ?    4.0   0.0     0.049        52       1      26 [.    1122    1147 ..    1122    1159 .. 0.89
   3 ?   -1.5   0.1       2.5   2.7e+03      29      43 ..    1571    1585 ..    1547    1645 .. 0.67
   4 ?   -1.4   0.0       2.4   2.5e+03      33      51 ..    1637    1656 ..    1599    1671 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.078
                  -S-HHHHH..-.SS-EEEEEEETT.EE CS
     DUF1905   20 PedvseelktggkgsvkVkatidgttf 46  
                  P +vs++  t + g  +V++t+dgt+ 
  KIR63007.1 1062 PPQVSATA-TPTTGTAPVTVTFDGTAT 1087
                  78888887.899************964 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.049
                  EEEE-EE-TT-.S-EEEE--S-HHHH CS
     DUF1905    1 FtatlwkwegkggwtfvevPedvsee 26  
                  Ftatl+  +++g  ++v+vP +v+++
  KIR63007.1 1122 FTATLTVTDARGAKAYVTVPVKVEAA 1147
                  9**********99********99987 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.5
                  .-.SS-EEEEEEETT CS
     DUF1905   29 tggkgsvkVkatidg 43  
                  t+g+   +V++t+ +
  KIR63007.1 1571 TEGWHTAPVTVTLAA 1585
                  444444455444433 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 2.4
                  S-EEEEEEETT..EEEEEEE CS
     DUF1905   33 gsvkVkatidgt.tfrtslf 51  
                  +  kV ++idgt + +++ f
  KIR63007.1 1637 TAKKVNVKIDGTaPVSSAAF 1656
                  45689999999976665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1939 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.03u 0.30s 00:00:01.33 Elapsed: 00:00:00.49
# Mc/sec: 11832.94
//
Query:       KIR63008.1  [L=208]
Description: thiamine-phosphate pyrophosphorylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-45  153.7   1.7    3.6e-45  153.5   1.7    1.0  1  TMP-TENI  Thiamine monophosphate synthase
  ------ inclusion threshold ------
       0.36   10.0   0.7       0.61    9.2   0.7    1.3  1  DUF561    Protein of unknown function (DUF561)


Domain annotation for each model (and alignments):
>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.5   1.7     4e-49   3.6e-45       1     181 []       7     189 ..       7     189 .. 0.95

  Alignments for each domain:
  == domain 1  score: 153.5 bits;  conditional E-value: 4e-49
    TMP-TENI   1 lylvtdskldkneellevveealkgg.vt.lvqlRek.eldarellelaeklaalcrkygvpliindrvdlalavgadgvHlgqddlpvaearellgpd 96 
                 l l+td++    ++ l+v+++al    ++ +vq+R   ++++re ++la+++ alc+ yg+  ++ndr+++alavga g H+g ddlpva ar++lgp 
  KIR63008.1   7 LHLITDTRPG--RDPLAVLRAALPVArAElVVQVRVTdDATDREAYDLARRAVALCAPYGAMCLVNDRLHVALAVGAAGGHVGADDLPVAAARRVLGPT 103
                 5789997766..99999999999986544278***996799********************************************************** PP

    TMP-TENI  97 liiGlSvhsleeaeeaealgadYigvGpifpTdtKkda.eplgleglkelaealeiPvvaiGGitlenvaevleagadgvavvsai 181
                 +++G+++  +  a+ea a ga+Y+gvGp+++TdtK +  +p+g eg++++a a+ +Pv+aiGG+t++ v+++++aga gvavv a+
  KIR63008.1 104 AVLGATARAPGPAAEAVAGGASYLGVGPCHATDTKAGLpDPIGPEGVRAVAGAVAVPVIAIGGVTAAAVPALRAAGAYGVAVVGAL 189
                 ***********************************************************************************885 PP

>> DUF561  Protein of unknown function (DUF561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.7   6.8e-05      0.61     180     219 ..     152     191 ..     148     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 6.8e-05
      DUF561 180 eiskkvslPvicasGlsdvtvplalslgasGiGigsavsk 219
                 +++ +v +Pvi+  G++  +vp   ++ga G+ +  a+s 
  KIR63008.1 152 AVAGAVAVPVIAIGGVTAAAVPALRAAGAYGVAVVGALSA 191
                 78899******************99*******99877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1390.59
//
Query:       KIR63009.1  [L=361]
Description: glycine oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-61  208.1  13.6    3.2e-61  207.9  13.6    1.0  1  DAO            FAD dependent oxidoreductase
    4.5e-05   23.6   1.3    0.00013   22.1   1.3    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00038   19.7   2.9    0.00038   19.7   2.9    1.7  2  FAD_binding_2  FAD binding domain
     0.0078   16.1   0.2      0.013   15.4   0.2    1.4  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
  ------ inclusion threshold ------
      0.033   13.6   0.1      0.052   12.9   0.1    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      0.042   12.5   2.1      0.072   11.8   2.1    1.4  1  HI0933_like    HI0933-like protein
      0.056   13.9   0.7       0.66   10.5   0.2    2.9  3  XdhC_C         XdhC Rossmann domain
      0.071   13.7   0.8       0.23   12.0   0.2    2.1  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.092   13.2   0.0        1.7    9.1   0.0    2.3  2  NAD_binding_7  Putative NAD(P)-binding
       0.19   12.0   2.9       0.44   10.9   2.2    1.9  2  DUF3040        Protein of unknown function (DUF3040)
       0.37   10.8   3.3       0.16   12.0   0.6    1.7  2  NAD_binding_9  FAD-NAD(P)-binding
        1.4    7.9   5.5        0.2   10.6   1.6    1.6  2  Lycopene_cycl  Lycopene cyclase protein
          2    7.4   3.4        2.9    6.9   3.4    1.2  1  GIDA           Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.9  13.6   2.3e-64   3.2e-61       3     352 .]       2     331 ..       1     331 [. 0.88

  Alignments for each domain:
  == domain 1  score: 207.9 bits;  conditional E-value: 2.3e-64
                 EEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS.STHHSTHHHHHHHHHHHHHH....HHHHHHHSSTTSEEEEEEEEEESSHH CS
         DAO   3 viiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl.rylpeaselarlslealeel....releeelgididyrrtGllslaadee 94 
                 +++GGG +Gl++A+  a+rg  Vt+ + +  +gsgaS+ ++g+l++   +y+ e  el  l  ++ +++    +el +  g+d++yr  G+l+++ + +
  KIR63009.1   2 AVVGGGAVGLAVAWRCAARGlrVTVHDPA--PGSGASHVAAGMLSPVAeAYFGER-ELTGLLVASAARWpafaAELTAASGVDLGYRTEGTLVVGLTGD 97 
                 7***************************9..899************769778877.888999999999954445555668**************98767 PP

                 HHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTST.TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEE CS
         DAO  95 elealdkllallleagldaelldaeevrelepalp.gllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttpgenda 192
                 +l++ ++l+  ++++gl+ + l+++e+r++epal+ +++g+ + p++ qvdp++l+ al+ aae++G+++++g  v++l       + +          
  KIR63009.1  98 DLAEAQRLWSYQRDLGLPISPLRPSELRDREPALAtRVRGGAVAPGDHQVDPRRLVTALRTAAERAGATLVTG-AVRAL-------SDL-----D---- 179
                 79999999999999******9***99******94459************************************.99997.......446.....2.... PP

                 EEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCT.HSTGSGCSEEEEE.EEETTTTEEEEEETTSEEEEEESSEEETTCSSTSCSHHHHHHHH CS
         DAO 193 adavVnaaGawsdllgllkeldlpispvrgqvlvlkplse.klvspaailpvpe.tdddgrgvyvtprkdgrvlvGgtadeesgdddpevdeedidell 289
                 a+  V+aaG+++  l     l  p++pv+gq+l+l+ ++  ++ ++     + +    dg  vy++pr+dg+v+vG+t   e++ d+ +v++ ++ +ll
  KIR63009.1 180 ARVTVVAAGCGAAAL---TGL--PVRPVKGQILRLRAPDGgPPGFR-----HVVrGYADGEPVYLVPREDGEVVVGATV--EERADT-DVTAGAVLRLL 265
                 6999*******9866...678..************55444143333.....33346677999****************8..777788.9********** PP

                 HHHHHHSGGGCG..EEEEEEEEEE.ETTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHHH CS
         DAO 290 ealrklfPqlgd..vlrkwaGlrp.lpdglpligetpgvkglylatGhsghGltlapatGkllael 352
                 +a+ +l+P+l++  ++++ aGlrp +pd+ p+ig+ pg +g+++atGh +hG+ l p+t+ l++el
  KIR63009.1 266 RAAVDLVPELAEyeLVEATAGLRPgTPDNAPIIGPLPGRPGVLVATGHHRHGIVLTPLTADLVTEL 331
                 *********96644779*******99*********9999************************997 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   1.3   9.4e-08   0.00013       1      32 [.       3      34 ..       3      39 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 9.4e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32
                   +vG+G+ Gl+ A+++a +g++v++ + +++ G
     KIR63009.1  3 VVGGGAVGLAVAWRCAARGLRVTVHDPAPGSG 34
                   8************************9998877 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   2.9   2.8e-07   0.00038       3      46 ..       2      44 ..       1      55 [. 0.92
   2 ?   -3.2   0.0       2.3   3.2e+03     143     155 ..     152     164 ..      99     194 .. 0.56

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.8e-07
                   EEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE CS
  FAD_binding_2  3 iViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgid 46
                    V+G+G+ GLa A ++a +Gl+v+v + ++  +ga++ + G++ 
     KIR63009.1  2 AVVGGGAVGLAVAWRCAARGLRVTVHDPAPG-SGASHVAAGMLS 44
                   69****************************9.99*******986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.3
                    HHHHHHHHHHTCT CS
  FAD_binding_2 143 llarlvesarkag 155
                    l+ +l ++a++ag
     KIR63009.1 152 LVTALRTAAERAG 164
                    2222222222222 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   9.6e-06     0.013       3      34 ..       2      33 ..       1      82 [. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.6e-06
                EEE--SCCHHHHHHHHHHTT-EEEEE-S-HHH CS
     3HCDH_N  3 aviGaGtmGagiaavfasagleVvlvdiseea 34
                av+G G +G  +a  +a++gl+V++ d ++ +
  KIR63009.1  2 AVVGGGAVGLAVAWRCAARGLRVTVHDPAPGS 33
                9**************************97654 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   3.8e-05     0.052      40      72 ..       2      34 ..       1      49 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.8e-05
                  EEES-SHHHHHHHHHHHHTT-EEEEESSSHHHH CS
  2-Hacid_dh_C 40 GiiGlGrIGqavakrlkafgmkviaydrskkke 72
                  +++G G++G ava r++a g++v+++d+ + + 
    KIR63009.1  2 AVVGGGAVGLAVAWRCAARGLRVTVHDPAPGSG 34
                  79**************************97654 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.1   5.2e-05     0.072       4      36 ..       2      34 ..       1      42 [. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.2e-05
                 EEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  4 iviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 +v+GgGa Gl  A ++a+rg rV++ + a+  g
   KIR63009.1  2 AVVGGGAVGLAVAWRCAARGLRVTVHDPAPGSG 34
                 7************************99887665 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00048      0.66       1      34 [.       1      34 [.       1     165 [. 0.80
   2 ?    0.5   0.0       0.6   8.3e+02      13      62 ..     171     258 ..     162     268 .. 0.58
   3 ?   -3.1   0.0       7.5     1e+04       3      34 ..     310     342 ..     308     356 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00048
                EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG CS
      XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpreefa 34
                ++++G+g v+ a+a   aa g+rvtv dp +   
  KIR63009.1  1 MAVVGGGAVGLAVAWRCAARGLRVTVHDPAPGSG 34
                689**************************99533 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.6
                 HHHHHHHHTEEEEEEES-GGGG............-GGG-TT-SE..................................-EEEE--S-HHHHHHHHH CS
      XdhC_C  13 larlaaalgfrvtvvdpreefa............tkerfpeade..................................tavvvlthdhklDaeale 62 
                  +r ++ l+ rvtvv +   +a            +                                           ++vv +t + + D+++ +
  KIR63009.1 171 AVRALSDLDARVTVVAAGCGAAaltglpvrpvkgQ--------IlrlrapdggppgfrhvvrgyadgepvylvpredgEVVVGATVEERADTDVTA 258
                 57888999999999988775552334333333330........03333333444444444455555555555555666777777777777776665 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 7.5
                 EE--STTHHHHHHHHHHHTEEEEEEES-G.GGG CS
      XdhC_C   3 ifGaghvaqalarlaaalgfrvtvvdpre.efa 34 
                   G+   +  l +l a l  +++v++p + ++a
  KIR63009.1 310 ATGHHRHGIVLTPLTADLVTELVVAEPTApATA 342
                 566777777788888888888888888874443 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   0.00017      0.23       2      29 ..       1      28 [.       1      37 [. 0.90
   2 ?   -1.2   0.0       2.3   3.1e+03      17      29 ..     174     186 ..     163     188 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
                EEEECSSHHHHHHHHHHHHTTSEEEEEE CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvve 29
                ++vvGgG +gl +A   a+ g +Vtv +
  KIR63009.1  1 MAVVGGGAVGLAVAWRCAARGLRVTVHD 28
                58***********************965 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.3
                 HHHHTTSEEEEEE CS
   Pyr_redox  17 alaelgkkVtvve 29 
                 al++l ++Vtvv 
  KIR63009.1 174 ALSDLDARVTVVA 186
                 7899999****96 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0012       1.7      11      40 ..       2      31 ..       1     119 [. 0.61
   2 ?    1.8   0.0      0.24   3.2e+02      23      39 ..     172     188 ..     166     273 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0012
  NAD_binding_7 11 lvvGgGevAarkvrklleagakvtvvapev 40
                    vvGgG v++  + + ++ g +vtv +p+ 
     KIR63009.1  2 AVVGGGAVGLAVAWRCAARGLRVTVHDPAP 31
                   69***********************99885 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.24
  NAD_binding_7  23 vrklleagakvtvvape 39 
                    vr l + +a+vtvva  
     KIR63009.1 172 VRALSDLDARVTVVAAG 188
                    678999999****9976 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       9.2   1.3e+04      23      33 ..      68      78 ..      65      94 .. 0.58
   2 ?   10.9   2.2   0.00032      0.44      17      79 ..     123     193 ..     122     197 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 9.2
     DUF3040 23 Pklaaalrgga 33
                P++aa+l++ +
  KIR63009.1 68 PAFAAELTAAS 78
                78888883332 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00032
     DUF3040  17 aLaaeDPklaaalrggaar..arrrslrrlavlavllfva.GllllvlGvaaaa......vvlgvvGfvvml 79 
                 +L+  +P+la ++rgga     ++  +rr +v a+ +++  + + lv+G++ a       v+++++G ++++
  KIR63009.1 123 ELRDREPALATRVRGGAVApgDHQVDPRR-LVTALRTAAErAGATLVTGAVRALsdldarVTVVAAGCGAAA 193
                 69999***********9997555555555.555555555567788899966666689988777777777664 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.6   0.00011      0.16       1      43 [.       2      40 ..       2      47 .. 0.86
   2 ?   -2.6   0.1       3.6     5e+03     106     137 ..     154     185 ..     150     191 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsep.gagrvwr 43
                   a+vG+G+ Glav+ r +ar      l++t+ dp++  ga +v+ 
     KIR63009.1  2 AVVGGGAVGLAVAWRCAAR-----GLRVTVHDPAPGsGASHVAA 40
                   89**************999.....5********65449888876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.6
  NAD_binding_9 106 ellarlpegvtvevhraevvdleeradgqavl 137
                    ++l+++ e+   +++++ v +l++ +++++v+
     KIR63009.1 154 TALRTAAERAGATLVTGAVRALSDLDARVTVV 185
                    45556666666777777777777777776665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.6   0.00015       0.2       3      36 ..       2      33 ..       1      43 [. 0.90
   2 ?   -3.3   0.1       2.5   3.4e+03     130     143 ..     178     191 ..     154     211 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
  Lycopene_cycl  3 vviGaGpAglslAarlteakpglkvvlieaspsl 36
                   +v+G+G+ gl++A r   a+ gl+v++ +++p++
     KIR63009.1  2 AVVGGGAVGLAVAWRC--AARGLRVTVHDPAPGS 33
                   79**************..9**********99986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.5
  Lycopene_cycl 130 irarlvvdarglas 143
                    ++ar+ v+a g ++
     KIR63009.1 178 LDARVTVVAAGCGA 191
                    55555555555333 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.4    0.0021       2.9       3      28 ..       2      27 ..       1      49 [. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0021
                EEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  3 iViGgGhAGceAAlaaarlGakvlLi 28
                 V+GgG  G++ A+ +a +G++v+ +
  KIR63009.1  2 AVVGGGAVGLAVAWRCAARGLRVTVH 27
                69*********************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2409.05
//
Query:       KIR63010.1  [L=66]
Description: thiamine biosynthesis protein ThiS [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-14   52.8   0.3    5.4e-14   52.6   0.3    1.0  1  ThiS      ThiS family
  ------ inclusion threshold ------
      0.037   14.1   0.3       0.14   12.2   0.3    1.9  1  TGS       TGS domain
       0.13   12.3   0.3       0.36   10.9   0.2    1.8  2  Fer2_4    2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.3   9.1e-18   5.4e-14       2      77 .]       4      66 .]       3      66 .] 0.92

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 9.1e-18
                EETTCCHHHHTCEEEEESSTSBHHHHHHHHHHHTCHHGTTTTEEEEETTEEEGC.CTTTSB--TTCEEEEEESTTC- CS
        ThiS  2 llfaelrelageeelelaegstvaelleaLgerypelalerrvavavNgeivpr.lwldtelkdgDevailppVaGG 77
                +++++ r+l          g+tva+++  +  +       r++avavNge+vpr  w  t+l+dgD v++l + +GG
  KIR63010.1  4 TVNGTGRTLPA--------GATVADAVGLVTDER------RGLAVAVNGEVVPRgGWPATPLRDGDHVEVLSAAQGG 66
                56777777777........************999......**************88********************9 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   2.4e-05      0.14       8      59 ..       7      60 ..       3      61 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.4e-05
                SSEEEEETTB-HHHHHHHHSTTHHHHEEEEEECSEEEET....TSBB-SSEEEEEE CS
         TGS  8 GkvpdlprgatveDfAykIhrslakkfiyAlVnGqrvgl....dhvLedgdvveIv 59
                G   +lp gatv D+   +     ++ ++  VnG+ v+      ++L+dgd ve++
  KIR63010.1  7 GTGRTLPAGATVADAVGLVTD--ERRGLAVAVNGEVVPRggwpATPLRDGDHVEVL 60
                666779999999999999985..56679999***9999633347*********986 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2     6e-05      0.36       5      25 ..       2      22 ..       1      45 [. 0.93
   2 ?   -0.2   0.0      0.18   1.1e+03      69      78 ..      49      58 ..      28      62 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6e-05
      Fer2_4  5 tltfDGkevtvpeGdtvasAl 25
                +lt++G+  t p+G tva+A+
  KIR63010.1  2 ELTVNGTGRTLPAGATVADAV 22
                79*****************97 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.18
      Fer2_4 69 tpvedGlkve 78
                tp++dG  ve
  KIR63010.1 49 TPLRDGDHVE 58
                6667776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       180  (0.0100396); expected 358.6 (0.02)
Passed bias filter:                      148  (0.00825478); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 485.09
//
Query:       KIR63011.1  [L=261]
Description: thiazole synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.5e-108  361.8   0.8   1.7e-108  361.6   0.8    1.0  1  ThiG          Thiazole biosynthesis protein ThiG
    4.7e-05   22.6   0.2    0.00072   18.7   0.1    2.0  2  FMN_dh        FMN-dependent dehydrogenase
    0.00027   20.5   0.1    0.00073   19.1   0.0    1.6  2  His_biosynth  Histidine biosynthesis protein
  ------ inclusion threshold ------
      0.012   14.8   0.1      0.017   14.3   0.1    1.3  1  Dus           Dihydrouridine synthase (Dus)
      0.014   14.4   0.4      0.021   13.8   0.4    1.2  1  IMPDH         IMP dehydrogenase / GMP reductase domain
      0.018   14.2   0.3      0.083   12.1   0.1    2.0  3  NanE          Putative N-acetylmannosamine-6-phosphate epimer
      0.067   13.0   0.0       0.12   12.2   0.0    1.4  1  SOR_SNZ       SOR/SNZ family
      0.075   12.6   0.0       0.13   11.9   0.0    1.3  1  LDcluster4    SLOG cluster4 family
        0.2   11.0   2.5        0.3   10.4   2.5    1.3  1  NMO           Nitronate monooxygenase


Domain annotation for each model (and alignments):
>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.6   0.8  8.4e-112  1.7e-108       2     247 .]      10     254 ..       9     254 .. 0.99

  Alignments for each domain:
  == domain 1  score: 361.6 bits;  conditional E-value: 8.4e-112
                 ETTEEES--EEEE-STSSSHHHHHHHHHHHT-SEEEEECCGSTTTS.TTS--CCCCCHCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BC CS
        ThiG   2 iagkefksrlllGtgkykslevlkeaveasgaeivtvalrRvnleekaseeellelleekevtllPntaGaktaeeAvriarlarevletdliklEvia 100
                 ++g +f srl+lGtg ++sl++l++a++asg+e+vt+alrRv++     +  ll+ll++ +v+llPntaG++ta eAv++a+lare+++td++klEvi+
  KIR63011.1  10 LGGVTFGSRLILGTGGAASLHALEQAIRASGTELVTLALRRVDTAP-GMGGGLLDLLDRCGVRLLPNTAGCYTAGEAVKVAHLAREAFDTDWVKLEVIG 107
                 7899****************************************99.5689************************************************ PP

                 ETTTTEB-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTS----S-HHHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-S CS
        ThiG 101 dektLlPdvvetlkaaeiLvkeGFevlpYvsdDlvlarrleevGcaavmPlaapiGsglGllnkealkiiieeakvPvivDAGigspsdaaqamelGad 199
                 de+tLlPd ve+l+aae+Lv++GF+vlpY+sdD++larrl +vGcaavmP +apiGsglG++n++ +++i+++++vPvi+DAGig++sdaa amelG+d
  KIR63011.1 108 DERTLLPDGVELLRAAETLVADGFTVLPYTSDDPILARRLADVGCAAVMPAGAPIGSGLGVNNPHHIRLIRQSVDVPVILDAGIGTASDAALAMELGCD 206
                 *************************************************************************************************** PP

                 EEEESHHHHTSSSHHHHHHHHHHHHHHHHHHHHH------SS-XTTST CS
        ThiG 200 avllntavaeakdpvamArafklaveaGrlaylagriekrevasassp 247
                 avll++av++a+dpvamA+a+++aveaGrla+ agri++r +a as+p
  KIR63011.1 207 AVLLASAVTRAADPVAMASAMRYAVEAGRLAHGAGRIPRRFHALASTP 254
                 **********************************************98 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.042        83     107     163 ..      94     157 ..      74     168 .. 0.72
   2 !   18.7   0.1   3.6e-07   0.00072     206     254 ..     172     221 ..     159     235 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.042
                 HHTT-EEEEEE-CSSHHHH....HHHHHHHHHC...TESEEEEESSTSS---BHHHHHCT--BS CS
      FMN_dh 107 aaegplwfqlyvpkdrelt....eellkraeaa...gykalvltvDtpvlgkRerdlrngfslp 163
                 +a ++ w++l v  d+ +      ell+ ae +   g+++l  t D p+l +R +d+     +p
  KIR63011.1  94 EAFDTDWVKLEVIGDERTLlpdgVELLRAAETLvadGFTVLPYTSDDPILARRLADVGCAAVMP 157
                 444567777777766665422224788888877777*****************99987665555 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 3.6e-07
                 HHHHHHHHHHSSEEEEE.EE-SHHHHHHHHHTTESEEEE--GGGTSSTT- CS
      FMN_dh 206 ddikwlreqtklplvvK.GvltaedakraveaGvdgivvSNHGGRqldga 254
                 ++i+ +r+ +++p+++  G+ ta da +a+e+G+d+++++    R  d +
  KIR63011.1 172 HHIRLIRQSVDVPVILDaGIGTASDAALAMELGCDAVLLASAVTRAADPV 221
                 56888888888888885488888888888888888888888888877755 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.1   2.1e+03      98     128 ..      18      48 ..      14      53 .. 0.74
   2 !   19.1   0.0   3.6e-07   0.00073      61     106 ..     170     215 ..     148     228 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
                   EEEESHHHHH-THHHHHHHHHHCGGGEEEEE CS
  His_biosynth  98 kviigtaavknpelikelaekfgsqkivvai 128
                   ++i+gt  + + + +++++++ g + +++a+
    KIR63011.1  18 RLILGTGGAASLHALEQAIRASGTELVTLAL 48 
                   6777777777777777777777777666665 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 3.6e-07
                   HHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHH CS
  His_biosynth  61 nldlveeiaeevfipvqvGGGIrsledveelleagadkviigtaav 106
                   n + ++ i+++v++pv ++ GI + +d++ ++e+g+d v +++a+ 
    KIR63011.1 170 NPHHIRLIRQSVDVPVILDAGIGTASDAALAMELGCDAVLLASAVT 215
                   3344555555555555555555555555555555555555555544 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   8.4e-06     0.017     173     218 ..     172     216 ..     143     239 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.4e-06
                 HHHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCC CS
         Dus 173 eaIkevkqavsipviaNGdIkdaedaqaileetGadgvmigrgalg 218
                 ++I+ ++q+v +pvi   +I +a+da  ++e  G+d+v+ + +  +
  KIR63011.1 172 HHIRLIRQSVDVPVILDAGIGTASDAALAMEL-GCDAVLLASAVTR 216
                 67999*************************99.******9877654 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.4     1e-05     0.021     203     242 ..     178     217 ..     161     240 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1e-05
                 HCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 203 akkagvpviaDGGikysgdivkAlaaGadavmlGsllagt 242
                  ++ +vpvi D Gi +  d + A+ +G dav+l s +++ 
  KIR63011.1 178 RQSVDVPVILDAGIGTASDAALAMELGCDAVLLASAVTRA 217
                 56789****************************9988765 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.49   9.8e+02     152     173 ..     137     158 ..     117     174 .. 0.73
   2 ?    2.1   0.1     0.048        95      14      36 ..     164     186 ..     148     191 .. 0.78
   3 ?   12.1   0.1   4.2e-05     0.083     143     181 ..     181     219 ..     167     228 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.49
                 ---SHHHHHHHHTT--SEEEE- CS
        NanE 152 rintPekakkaieiGvdavvvG 173
                   + P +a++  ++G +av+  
  KIR63011.1 137 TSDDPILARRLADVGCAAVMPA 158
                 3577999999999999988744 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.048
                 SEEEEESHHHHHHHHTT--S-EE CS
        NanE  14 vgiriegvedikaikavvdlPii 36 
                 +g+ ++  + i+ i++ vd+P+i
  KIR63011.1 164 SGLGVNNPHHIRLIRQSVDVPVI 186
                 5888999999***********98 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 4.2e-05
                 TT--EEEES---SHHHHHHHHTT--SEEEE-HHHH-HHH CS
        NanE 143 aglkviaeGrintPekakkaieiGvdavvvGsaitrlee 181
                  ++ vi +  i t   a+ a+e+G dav + sa+tr ++
  KIR63011.1 181 VDVPVILDAGIGTASDAALAMELGCDAVLLASAVTRAAD 219
                 4678999999**************************865 PP

>> SOR_SNZ  SOR/SNZ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.9e-05      0.12      57     108 ..     169     221 ..     148     247 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.9e-05
                 --HHHHHHHHHH-SS-EEEEEETT-HHHHHHHHHTT-SEEE.EETTS--S-SS CS
     SOR_SNZ  57 sdpklikeikeavsipvmakvriGhfveaqilealgvdyiD.esevltpadee 108
                  +p+ i+ i ++v++pv+  + iG   +a +  +lg d +   s v   ad  
  KIR63011.1 169 NNPHHIRLIRQSVDVPVILDAGIGTASDAALAMELGCDAVLlASAVTRAADPV 221
                 6899**********************************875145555556655 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.3e-05      0.13      92     129 ..     176     213 ..     154     233 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.3e-05
  LDcluster4  92 ilvlssdvviaiggrsGTlsEialaleegkpvivlkgt 129
                 ++ +s dv ++++ ++GT+s  ala+e g   ++l + 
  KIR63011.1 176 LIRQSVDVPVILDAGIGTASDAALAMELGCDAVLLASA 213
                 345799***********************999999854 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.5   0.00015       0.3     185     234 ..     174     223 ..     142     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
         NMO 185 vpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesdak 234
                 +  +++ vd+Pvi   Gi ++ + a a+ lG  +v ++++   + +  a 
  KIR63011.1 174 IRLIRQSVDVPVILDAGIGTASDAALAMELGCDAVLLASAVTRAADPVAM 223
                 5678999********************************98777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1821.92
//
Query:       KIR63012.1  [L=261]
Description: phosphomethylpyrimidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-80  270.0   0.9    1.9e-80  269.8   0.9    1.0  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
      5e-15   55.6   3.4    7.2e-15   55.1   3.4    1.1  1  PfkB          pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.8   0.9   2.1e-84   1.9e-80       1     245 [.      13     255 ..      13     256 .. 0.96

  Alignments for each domain:
  == domain 1  score: 269.8 bits;  conditional E-value: 2.1e-84
                   ETTSSSHHHHHHHHHHHTTEEEEEEEEEEEEEETTCEEEEEE--HHHHHHHHHHHHHTS--SEEEE-S--SHHHHHHHHHHHHHTTS.SEEEE---S CS
  Phos_pyr_kin   1 DssGGAGiqADlktfsalgvygmsvitaltaqntkgvkevhplpaelveaqleavledvkvdavKiGmlasaeiievvaeklkkykv.pvVlDPVmv 96 
                   Ds+GGAGiqADlk+f+alg+yg+sv+ta+taqnt+gv++v plp+++v++ql++vl d++v+avK+Gml++ +++++va++ +  ++ ++V+DPV+v
    KIR63012.1  13 DSGGGAGIQADLKVFAALGAYGTSVLTAVTAQNTRGVDAVLPLPPRTVTEQLDSVLGDFRVRAVKTGMLGNPAVADAVADAARAGRLpHLVVDPVLV 109
                   9*********************************************************************************998998********* PP

                   SCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE---- CS
  Phos_pyr_kin  97 aksgselleeeavealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveeleaeriet 193
                   a+sg++l   eav   + +Llp a+v tPN +Ea+aL+g++++t+e+m +aa++l++ g  +V+++Gg+++   + ++dvl+ g+ ++ l+a+r+ t
    KIR63012.1 110 ATSGHRLGVVEAV---E-RLLPYAEVATPNCAEAAALTGRPVTTVEEMVAAAEALAAGGPAHVVVTGGDVDAAGE-SVDVLVGGGATTLLRARRVRT 201
                   *******765554...4.49*************************************************966444.48******************* PP

                   S--BTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHH..CG-BSTSSS-B- CS
  Phos_pyr_kin 194 knthGtGCtlssaiaaelakgesleeAvkkAkeyvteaik..ealelgkgagpv 245
                   ++ hGtGC++s+aia +la g++++ Av+ Akeyvt+a+   +++elg g gp+
    KIR63012.1 202 RHSHGTGCSFSAAIAVRLAAGDPVPAAVAAAKEYVTRALTgaRDWELGAGRGPL 255
                   ***************************************99999********98 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   3.4   8.1e-19   7.2e-15     146     283 ..      85     233 ..      75     238 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 8.1e-19
                 HHHHHHHHHHHHTTE....EEEEECESSSHH..HHHHHHHHHCTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE.. CS
        PfkB 146 avleelaeaaknggt....fdpnlldplgaq..fkeallellaladllkpneeElealtgekledieealaalhklkakgaktvvvtlGkeGalvve.. 236
                 av  ++a+aa++g      +dp+l++++g    ++ea+++ll++a +++pn +E++altg++ +++ee +aa+++l a g+++vvvt G   a+  +  
  KIR63012.1  85 AVADAVADAARAGRLphlvVDPVLVATSGHRlgVVEAVERLLPYAEVATPNCAEAAALTGRPVTTVEEMVAAAEALAAGGPAHVVVTGGDVDAAGESvd 183
                 56667888888888888899*********88***********************************************999********9999887778 PP

                 ....TTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHH CS
        PfkB 237 ....kdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfan 283
                     ++++    a + v    + G+G sf +++++ l++g ++  a+++a 
  KIR63012.1 184 vlvgGGATTLLRA-RRVRTRHSHGTGCSFSAAIAVRLAAGDPVPAAVAAAK 233
                 8885555555555.99*******************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1937.11
//
Query:       KIR63013.1  [L=530]
Description: hypothetical protein TK50_19060 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-200  666.3   0.0   1.8e-200  666.1   0.0    1.0  1  ThiC_Rad_SAM     Radical SAM ThiC family
    1.1e-14   53.9   0.0    3.3e-14   52.4   0.0    1.9  1  ThiC-associated  ThiC-associated domain


Domain annotation for each model (and alignments):
>> ThiC_Rad_SAM  Radical SAM ThiC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  666.1   0.0    2e-204  1.8e-200       1     418 []      81     502 ..      81     502 .. 0.99

  Alignments for each domain:
  == domain 1  score: 666.1 bits;  conditional E-value: 2e-204
  ThiC_Rad_SAM   1 tqleaarkgiiteemeevaekenvepefvreevaeGrivipanknhkek.pvaiGkglrtkvnaniGtsadasdieeEveKlkvalkagadtvmdLs 96 
                   tql++ar+g++t+eme+va +e++ pefvr+e+a+Gr+v+p n+nh+e+ p++iGk + +kvnaniGtsa +s+++eEveKl++a+++gadtvmdLs
    KIR63013.1  81 TQLAYARAGVVTPEMEFVAIREGMAPEFVRDEIAAGRAVLPLNVNHPECePAIIGKAFLVKVNANIGTSAVTSSVAEEVEKLTWATRWGADTVMDLS 177
                   89********************************************8888*********************************************** PP

  ThiC_Rad_SAM  97 tggdideirekileespvpvgtvpiYqaleekekkveelteeellevieeqaedGvdfltiHagvtlellellkkekRltgivSrgGsllaawmlan 193
                   tg+ i+e+re+i+++spvp+gtvpiYqale++ ++ ++l++e ++e++ eqae+Gvd++t+Hagv l +++l+   +R+tgivSrgGs++aaw+la+
    KIR63013.1 178 TGKRIHETREAIVRNSPVPIGTVPIYQALEKVGGDPVKLSWEVFRETVIEQAEQGVDYMTVHAGVLLPYVPLAV--DRVTGIVSRGGSIMAAWCLAH 272
                   *************************************************************************9..********************* PP

  ThiC_Rad_SAM 194 ekenplyeefdelleilkeydvtlSlgdglRpGsiaDatdeaqlaelivlgelvkrareagvqvmveGPGHvpldeieanvklqkklckeaPfyvlG 290
                   ++en+ly++f el+ il++ydvt+SlgdglRpGsiaDa+deaq+ael +lgel++ a+e +vqvm+eGPGHvp+++i++nv+lq+++c+eaPfy+lG
    KIR63013.1 273 HEENFLYTNFRELCTILARYDVTFSLGDGLRPGSIADANDEAQFAELRTLGELTRIAWEYDVQVMIEGPGHVPMHKIKENVDLQQEWCHEAPFYTLG 369
                   ************************************************************************************************* PP

  ThiC_Rad_SAM 291 plvtDiapgYDhitsaiGaalaaaaGadllCyvtpaEHlglPdeedvkeGviaakiaahaadlakglkkarerdkalskaRkeldwekqfelaldpe 387
                   pl+tDiap+YDhitsaiGaa++++ G+++lCyvtp+EHlglPd++dvk+Gvia+kiaahaadlakg+++a+++d+alskaR+e++w++qf+l+ldpe
    KIR63013.1 370 PLTTDIAPAYDHITSAIGAAMIGMFGTAMLCYVTPKEHLGLPDRDDVKAGVIAYKIAAHAADLAKGHPGAQAWDDALSKARFEFRWSDQFNLSLDPE 466
                   ************************************************************************************************* PP

  ThiC_Rad_SAM 388 kareireeklpe....eeeaCsmCgek.Cavkivee 418
                   +ar++++++lp+    ++++CsmCg+k C++ki++e
    KIR63013.1 467 TARSYHDATLPAepakTAHFCSMCGPKfCSMKITQE 502
                   *********998788899********99*****985 PP

>> ThiC-associated  ThiC-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   3.7e-18   3.3e-14       4      80 ..       3      62 ..       1      63 [. 0.95

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 3.7e-18
                     T-EEEEEE-SSTT-EEEEEEE---GG.........G----EEEE---GGGG-TTS---TTT-S--TTHHHHHHTS-E CS
  ThiC-associated  4 nsrkvyvegsrpdirVpmreiklsptvlketkekeeenepvrvYDtSGpYtdpeveidvrkGLprlReaWieergdv 80
                     + rkvyveg rpd+rVp+ e++l+             n+pvr+YDtSGp +dpev      GLp+lR  Wi+ergdv
       KIR63013.1  3 ARRKVYVEGARPDVRVPFAEVDLTGD-----------NPPVRLYDTSGPGSDPEV------GLPPLRGPWIAERGDV 62
                     689********************987...........9***************86......***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3759.07
//
Query:       KIR63014.1  [L=764]
Description: hypothetical protein TK50_19065 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.26   10.8   1.5       0.34   10.4   0.4    1.7  2  CBP_BcsR  Cellulose biosynthesis protein BcsR


Domain annotation for each model (and alignments):
>> CBP_BcsR  Cellulose biosynthesis protein BcsR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.18   3.3e+03      31      36 ..      44      49 ..      42      49 .. 0.82
   2 ?   10.4   0.4   1.9e-05      0.34      29      41 ..     274     286 ..     272     287 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.18
    CBP_BcsR 31 alaRWP 36
                 ++RWP
  KIR63014.1 44 TVNRWP 49
                689**9 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 1.9e-05
    CBP_BcsR  29 asalaRWPLLaEl 41 
                 a+alaRWPLLa +
  KIR63014.1 274 AAALARWPLLARS 286
                 689*******965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 5867.29
//
Query:       KIR63015.1  [L=102]
Description: cupin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-05   24.2   0.3      3e-05   23.7   0.3    1.3  1  Cupin_2          Cupin domain
    0.00026   20.9   0.0    0.00029   20.7   0.0    1.0  1  MannoseP_isomer  Mannose-6-phosphate isomerase
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.022   14.4   0.0    1.2  1  Auxin_BP         Auxin binding protein
      0.089   12.2   0.0       0.14   11.6   0.0    1.2  1  PCO_ADO          PCO_ADO


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.3   6.7e-09     3e-05       2      63 ..      28      92 ..      27      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 6.7e-09
                EEEEETTEEEEEECSSSEEEEEEEEESE.EEEE.ECTEEEEEE..TTEEEEE-TT-EEEEEE-SSS CS
     Cupin_2  2 lvelppGesapshrHpgedeffyVleGe.gelt.vdgeevele..aGdsvyfpagtpHrfrNtgde 63
                +++l+pGe  p hrH++   +++ ++G   +++ +dg +++    +G +vy ++g  H + N gd+
  KIR63015.1 28 HIRLEPGERQPLHRHDHP-YLVIAVQGAkNVVQtIDGTTIDADepTGGVVYRDPGAVHMLTNVGDT 92
                6799**************.********9855556****66664228******************87 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   6.5e-08   0.00029      55     129 ..      16      93 ..       8     102 .] 0.76

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 6.5e-08
  MannoseP_isomer  55 evldegeryqvkritvkPgeklslqkhhhraehWvvvkGtakvtv..ddevlllkene..styiplgaihrlenpGkip 129
                      e + e++r +v +i ++Pge+  l++h h     + v+G+ +v +  d +++   e     +y   ga+h l n G ++
       KIR63015.1  16 EIVYENDRVRVWHIRLEPGERQPLHRHDHPY-LVIAVQGAKNVVQtiDGTTIDADEPTggVVYRDPGAVHMLTNVGDTT 93 
                      5677899********************9964.67899***9996611555555554322257999***********875 PP

>> Auxin_BP  Auxin binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   4.8e-06     0.022      38      74 ..      18      54 ..       5      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.8e-06
                HH--SSEEEEEEEE-TT-B--EEEESS-EEEEEEE-- CS
    Auxin_BP 38 lhgmkevevwlqtlapgsrtpihrhsceevfvvlkgk 74
                ++    v vw   l pg+r p+hrh    + + ++g 
  KIR63015.1 18 VYENDRVRVWHIRLEPGERQPLHRHDHPYLVIAVQGA 54
                55667899*****************887766666664 PP

>> PCO_ADO  PCO_ADO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.1e-05      0.14      31      65 ..      11      47 ..       3      54 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.1e-05
     PCO_ADO 31 ppvtyltlyetdsfslgvFvlppgaviPLH..dHPgM 65
                 pv+   +ye+d++ +    l+pg+  PLH  dHP +
  KIR63015.1 11 GPVGQEIVYENDRVRVWHIRLEPGERQPLHrhDHPYL 47
                6899999**********************64488866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 851.00
//
Query:       KIR63016.1  [L=322]
Description: F420-dependent oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-52  177.6  12.0    2.1e-51  175.2   9.7    1.9  2  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.2   9.7   1.2e-55   2.1e-51       6     245 ..       6     255 ..       1     265 [. 0.92
   2 !    3.0   0.0    0.0031        55     292     313 ..     265     286 ..     255     287 .. 0.88

  Alignments for each domain:
  == domain 1  score: 175.2 bits;  conditional E-value: 1.2e-55
  Bac_luciferase   6 flptrqggalgaasaslrylvelaraaEelGfdavwvaehhggpgga......ldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLd 94 
                     f+  ++      ++ ++++ +++ara+E+ Gf++++ a+h++  g++       da+ +laala +T+rirlgt vt ++ r P  lA ++a +d
      KIR63016.1   6 FTEPHR------GA-TYDDQLRFARAVEAGGFEGFLRADHYQFLGTEpglpgpTDAWLTLAALARETTRIRLGTLVTSATFRLPGPLAVMVAQVD 93 
                     444444......55.9**************************98888************************************************ PP

  Bac_luciferase  95 hlsgGRfglglgtggpaveerrfGv...dhderyarlrEfvevlrrlwrg..eev.dfeGeffsvkgalllprpgqgp.iPvyvaaas.paglel 181
                     ++sgGR++lg+g+g+++ e++ +G+      er +rl+E +ev+ +lwr+  +e  +f Ge++++ +a  lp+p+q+p +Pv+v++++  ++ el
      KIR63016.1  94 QMSGGRVELGIGAGWYEREHTSYGIpfpAVGERFDRLAEQLEVITGLWRTpvGETySFTGEHYRLVDAPALPKPVQRPgPPVIVGGSGpRRTPEL 188
                     *************************888889*****************88996666*********************9788*******88899** PP

  Bac_luciferase 182 aarhadglllageppeeaaelierlragaaeagrdpa...dirvgisltvivadteeeAraearali 245
                     aar+ad + +  ++ +e a+++er+ ++  ++gr+++   ++ + +++ v++++t++eAr +a+ l 
      KIR63016.1 189 AARYADEFNVPFKSVAETAAAYERVVEACDRHGRPASgraPLVLSAAIAVAIGRTDAEARLRAAPLH 255
                     **********************************9999867777779999999*******9986665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0031
  Bac_luciferase 292 alvGtpeqvaerlaayaeagvd 313
                     a+vG+p+  ++r+ ++a+ g++
      KIR63016.1 265 AVVGSPARLVDRIGEFAAVGAT 286
                     78*****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2367.44
//
Query:       KIR63017.1  [L=266]
Description: nitrate ABC transporter ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-32  110.9   0.0    9.3e-32  110.4   0.0    1.2  1  ABC_tran      ABC transporter
    1.5e-07   31.5   0.1     0.0015   18.4   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    7.6e-05   23.1   0.2    0.00013   22.4   0.1    1.6  1  AAA_16        AAA ATPase domain
     0.0018   18.3   0.0     0.0057   16.7   0.0    2.1  1  MMR_HSR1      50S ribosome-binding GTPase
     0.0022   17.9   0.0     0.0041   17.0   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
     0.0025   18.1   0.0     0.0047   17.2   0.0    1.6  1  AAA_22        AAA domain
     0.0049   16.6   0.0       0.01   15.6   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.018   14.9   0.1      0.032   14.1   0.1    1.4  1  NACHT         NACHT domain
      0.038   13.4   0.0      0.058   12.8   0.0    1.3  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.04   13.5   0.2       0.15   11.7   0.0    1.9  2  AAA_25        AAA domain
      0.063   12.5   0.0      0.097   11.8   0.0    1.2  1  NB-ARC        NB-ARC domain
       0.11   12.2   0.4       0.24   11.1   0.1    1.6  2  AAA_30        AAA domain
       0.14   12.2   0.0       0.26   11.4   0.0    1.3  1  DUF87         Helicase HerA, central domain
       0.16   11.9   0.0       0.26   11.2   0.0    1.3  1  ATPase_2      ATPase domain predominantly from Archaea
       0.18   12.2   0.0       0.73   10.3   0.0    1.9  2  AAA           ATPase family associated with various cellular 
       0.21   11.0   0.0        3.1    7.2   0.0    2.0  2  SMC_N         RecF/RecN/SMC N terminal domain
       0.32   11.4   0.0       0.48   10.9   0.0    1.2  1  AAA_23        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.0   8.8e-35   9.3e-32       1     136 [.      21     160 ..      21     161 .. 0.95

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 8.8e-35
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 l+ ++l++ ege va++G++G+GKStLl+++agll  t+Gei++ g+++++      r+ i++l+q p l p  +v +n               +e++ 
  KIR63017.1  21 LRGIDLDVAEGEFVAVLGRSGCGKSTLLRMIAGLLPATAGEITVAGTPITR-----PRRDIAMLFQRPALLPWRSVLDNvllpveifgwkraGHRERAR 114
                 57899*****************************************99998.....********************************98887788899 PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++l+  gl +++++      ++LSgG++qrv+l+r+l+ +p+++l+DEp+
  KIR63017.1 115 ELLDLAGLAGFEKRLP----HELSGGMQQRVSLCRSLIGDPRVMLMDEPF 160
                 9999999999999998....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00021      0.23       1      23 [.      33      55 ..      33      82 .. 0.83
   2 !   18.4   0.0   1.5e-06    0.0015     234     298 ..     130     192 ..     107     195 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00021
      AAA_21  1 lnvliGpNgsGKSnLLdaldlla 23
                + ++ G+ g+GKS+LL+ + +l 
  KIR63017.1 33 FVAVLGRSGCGKSTLLRMIAGLL 55
                57899**************9995 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.5e-06
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHS 298
                 ++elS G+++   l  +l+ ++   ++ l DEp + L+    ++l + l + + + ga v+++THS
  KIR63017.1 130 PHELSGGMQQRVSLCRSLIGDP---RVMLMDEPFSALDALTREELSGELqRVHMTSGATVVFVTHS 192
                 689999*999977777777777...*********************88866666689********9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   1.3e-07   0.00013       2      63 ..      11      71 ..      10     188 .. 0.68

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.3e-07
      AAA_16  2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd.ggiflrgkcdql 63
                + GR   +e+L+ +  +v++g  e v + G sG+GKs+l+r+++  l ++ g i+++g+    
  KIR63017.1 11 FDGRAGRVEALRGIDLDVAEG--EFVAVLGRSGCGKSTLLRMIAGLLPATaGEITVAGTPITR 71
                789999999999987789988..78******************97666653233344444444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.4e-06    0.0057       2      56 ..      34     122 ..      33     236 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.4e-06
                 EEEEESTTSSHHHHHHHHHT...STEEESSSTTSSSSEEEEEEE..ETTEE..............................EEEEECGGC CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg...ekaivsdkpgtTrdinegrvk..lkgke..............................ielvDtpGl 56 
                 va++Gr+  GKStL++ + g   ++a     +gt ++  ++ ++  +++ +                               el+D++Gl
  KIR63017.1  34 VAVLGRSGCGKSTLLRMIAGllpATAGEITVAGTPITRPRRDIAmlFQR-PallpwrsvldnvllpveifgwkraghreraRELLDLAGL 122
                 89****************9944422222222233333322222211221.1233333444444444444444444444444666666664 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.9e-06    0.0041      97     130 ..      29      62 ..      14      70 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.9e-06
                  CTTSEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallpelelktgev 130
                   ++++++++G SG GKStL+ ++++ l +  ge+
   KIR63017.1  29 AEGEFVAVLGRSGCGKSTLLRMIAGLLPATAGEI 62 
                  456999*****************99887777777 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.5e-06    0.0047       6      61 ..      32      96 ..      28     197 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.5e-06
      AAA_22  6 gilvvtGesGtGKTtllrrlleqldeeakaee.........erpevvfvtlpsstsskdllrell 61
                 +++v G sG+GK+tllr+++  l++ a   +         +r+  ++++ p++  ++++l ++l
  KIR63017.1 32 EFVAVLGRSGCGKSTLLRMIAGLLPATAGEITvagtpitrpRRDIAMLFQRPALLPWRSVLDNVL 96
                6899*****************99986554444777777765555555666666666666666665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.6e-06      0.01      17      47 ..      26      55 ..      19      63 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.6e-06
      AAA_29 17 ieidlkgatlltGpsGsGKSTllDAiqalLv 47
                +++ + +++ + G+sG GKSTll  i+ l +
  KIR63017.1 26 LDVAEGEFVAVLGRSGCGKSTLLRMIAGL-L 55
                4555444999************9444444.3 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   3.1e-05     0.032       3      23 ..      34      54 ..      32      61 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-05
                EEEEC-TTTCHHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklala 23
                v++ G++G+GK+tLl+ +a +
  KIR63017.1 34 VAVLGRSGCGKSTLLRMIAGL 54
                899*************99865 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.5e-05     0.058       7      52 ..      16      61 ..      11      95 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.5e-05
  Mg_chelatase  7 GqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplsee 52
                  G+ ea r +++ +a g  + ++G +G+GK+ l + +++llp+   e
    KIR63017.1 16 GRVEALRGIDLDVAEGEFVAVLGRSGCGKSTLLRMIAGLLPATAGE 61
                  67778888889999999999*********************97654 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014      0.15      20      50 ..      19      48 ..       4      58 .. 0.79
   2 ?   -1.4   0.0       1.4   1.5e+03     172     189 ..     175     192 ..     161     194 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
      AAA_25 20 pprrwlvkgllpagelallaGapgtGKttla 50
                + +r +  ++ ++ge++++ G++g+GK+tl+
  KIR63017.1 19 EALRGIDLDV-AEGEFVAVLGRSGCGKSTLL 48
                5555555566.79****************97 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.4
      AAA_25 172 leriarrtgaavllvhHv 189
                 l+r+    ga+v++v H+
  KIR63017.1 175 LQRVHMTSGATVVFVTHS 192
                 556666679999999996 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.2e-05     0.097      19      40 ..      32      51 ..      17      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.2e-05
                CSEEEEEEESTTSSHHHHHHHH CS
      NB-ARC 19 qslvvalvGmgGvGKttlakqi 40
                +  +va+ G+ G+GK+tl++ i
  KIR63017.1 32 E--FVAVLGRSGCGKSTLLRMI 51
                4..9**************9987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00022      0.24      19      51 ..      32      64 ..      24      71 .. 0.81
   2 ?   -3.0   0.0       4.6   4.9e+03      38      63 ..     175     200 ..     170     205 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00022
      AAA_30 19 rvavltGpAGtGKttalkalreaweaaggrvig 51
                 ++++ G+ G GK+t+l+ ++ ++ a  g++ +
  KIR63017.1 32 EFVAVLGRSGCGKSTLLRMIAGLLPATAGEITV 64
                488999***************999998655554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.6
      AAA_30  38 lreaweaaggrviglAptgkaAkvLa 63 
                 l++++ ++g +v+ ++++   A  La
  KIR63017.1 175 LQRVHMTSGATVVFVTHSIDEAVLLA 200
                 56667777777777777777666665 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00024      0.26      25      44 ..      33      52 ..      19      62 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00024
       DUF87 25 HlAilgsTGsGKSntvavLl 44
                 +A+lg++G GKS++ + + 
  KIR63017.1 33 FVAVLGRSGCGKSTLLRMIA 52
                58*************99885 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00024      0.26      20      42 ..      31      53 ..      15      63 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
    ATPase_2 20 neiyfiYGpegsGKtaLlkeiie 42
                 e++ + G+ g+GK++Ll+ i+ 
  KIR63017.1 31 GEFVAVLGRSGCGKSTLLRMIAG 53
                678999*************9875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00069      0.73       3      50 ..      36      80 ..      34      92 .. 0.72
   2 ?   -0.7   0.0       1.7   1.7e+03      58      75 ..     150     172 ..     113     206 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00069
                EESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelf 50
                + G  G+GK++l + +a  l ++  ei ++      +    ++i++lf
  KIR63017.1 36 VLGRSGCGKSTLLRMIAGLLPATAGEITVAGTP---ITRPRRDIAMLF 80
                7899*************9987666555544443...335555555555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.7
                 TSEEEEEET....GGGHHHHH.T CS
         AAA  58 kpsilfiDE....idalaksr.s 75 
                 +p ++++DE    +dal++++ s
  KIR63017.1 150 DPRVMLMDEpfsaLDALTREElS 172
                 56666777644444444444432 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.003       3.1      24      44 ..      31      51 ..      23      61 .. 0.84
   2 ?    1.7   0.0      0.14   1.5e+02     161     196 ..     153     191 ..     108     213 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.003
                SSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldAi 44
                 +f a++G+ G+GKs ll  i
  KIR63017.1 31 GEFVAVLGRSGCGKSTLLRMI 51
                5799************99877 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.14
                 EEEECTTTTTS-HHHHHHHHHHHHHHCTT...SEEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxx RF
       SMC_N 161 lyllDeidaaLDeknvkkvaellkekskn...aQfivis 196
                 ++l+De  +aLD+  +++++  l++ + +   + ++v+ 
  KIR63017.1 153 VMLMDEPFSALDALTREELSGELQRVHMTsgaTVVFVTH 191
                 5789*********99999997777544331113333333 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00045      0.48      18      41 ..      30      53 ..      18      64 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00045
      AAA_23 18 skgltlItGpNGaGKTTildAikl 41
                +  ++++ G  G+GK+T+l+ i  
  KIR63017.1 30 EGEFVAVLGRSGCGKSTLLRMIAG 53
                55678899***********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 1722.88
//
Query:       KIR63018.1  [L=342]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-40  137.3   0.7    9.7e-40  136.8   0.7    1.2  1  NMT1            NMT1/THI5 like
    3.7e-12   46.5   0.7    8.2e-12   45.4   0.7    1.5  1  NMT1_2          NMT1-like family
    3.3e-05   23.6   0.1    4.8e-05   23.1   0.1    1.3  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
  ------ inclusion threshold ------
      0.075   12.5   0.1       0.68    9.4   0.1    2.0  2  VitK2_biosynth  Menaquinone biosynthesis


Domain annotation for each model (and alignments):
>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.8   0.7   2.2e-43   9.7e-40       8     216 .]      59     267 ..      56     267 .. 0.91

  Alignments for each domain:
  == domain 1  score: 136.8 bits;  conditional E-value: 2.2e-43
                 HHHHHTTHHHHTTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHHHHHH..TT--EEEEEEEE-S--EEEEEECCC--SSGGGGTTSEEEE-S-TTH CS
        NMT1   8 yvAkekGYFkeeGldVeivepadpsdatelvasgkadfgvsyqesllaara..kglpvvsvaallqeplsglivlkdsgikspkDLkGkrigyvgspfe 104
                  vAkekG+Fke+G dVei+++++++ +++++  g+adfg  + +  l++    +  + v+vaa+ q+++ ++++ ++++i spkDL+Gk+++  ++++ 
  KIR63018.1  59 WVAKEKGFFKEAGFDVEIKPGQGTGAVIQTIVGGQADFGPIDLTGGLLQLGngQAKDFVAVAAIQQRTMAAIVTVEGKNIASPKDLEGKKLADAPASVV 157
                 59************************************9887777776655237789****************************************** PP

                 HHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT-----SEEEEEEHHHHHH-HHHHHHHHHHHH CS
        NMT1 105 kallkallakdggdpsdvtlvnvggtslakalltgkvDaaiggyenwegvelesegkelrifaladlgvpdyyslvlitnekllkenpelvkkFlrAlk 203
                 + l+ +  + +g+d ++vt vn +   l+  l++g+vD +  ++ +  +ve +  +k++  ++++++   d+y +vlit+ k++ke+pe vk+F +Al 
  KIR63018.1 158 RNLFPTYARLAGVDVNKVTWVNGEPQTLMGTLASGSVDGIGQFVVGQPTVE-AVTKKKAVLLPYSNVMQ-DLYGNVLITSSKIAKEKPEMVKRFSAALI 254
                 ****************************9*********9998888855555.45566777777777765.***************************** PP

                 HHHHHHHHSHHHH CS
        NMT1 204 kGyeyalahPeea 216
                 kG+ey la+P+ea
  KIR63018.1 255 KGLEYSLANPQEA 267
                 ************8 PP

>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.7   1.8e-15   8.2e-12      22     248 ..      59     270 ..      49     273 .. 0.84

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 1.8e-15
      NMT1_2  22 vvakekglfakeGltvelekqaswaelrdkllagelDaahv.ltpapllidlGiggakadmkvlaslnlnGqaitlsnklkdkkvsdakalkdlvakkk 119
                  vakekg+f++ G +ve++  ++++++ + +++g+ D + + lt+ +  ++lG  g+++d+ ++a++++  +a +++ +      ++ ++ kdl     
  KIR63018.1  59 WVAKEKGFFKEAGFDVEIKPGQGTGAVIQTIVGGQADFGPIdLTGGL--LQLGN-GQAKDFVAVAAIQQRTMAAIVTVE--G---KNIASPKDL----- 144
                 69***************************************999976..56776.679999999999999998888632..2...556666666..... PP

      NMT1_2 120 askplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidg...fcvgePwnaqavaegiGvtaltsqelwkdhPekvlgvred 215
                   ++ k+a   p s  + l+ ++ + aG+d+ + v+ v   p  ++ +l++g +dg   f+vg P  + av ++    +l   ++ +d  + vl ++++
  KIR63018.1 145 --EGKKLAD-APASVVRNLFPTYARLAGVDV-NKVTWVNGEPQTLMGTLASGSVDGigqFVVGQPT-VEAVTKKK-AVLLPYSNVMQDLYGNVLITSSK 237
                 ..4556665.6888889999999999*****.89*********************988889****8.66776666.3667777888999********** PP

      NMT1_2 216 fveknpntaralvkalleAtkwldakkenraea 248
                 +++++p+ ++++  al++  +++ a+++ +ae+
  KIR63018.1 238 IAKEKPEMVKRFSAALIKGLEYSLANPQEAAEM 270
                 ******************999999655555554 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   1.1e-08   4.8e-05      25     160 ..      68     196 ..      64     277 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.1e-08
                     HHHSSEEEEE--SSHHHHHHHHHTTS-SEEE--HH.HHHHHHHHS-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHHGG-EEEE--TT-TTT CS
  Phosphonate-bd  25 eelGvevelvvatdyaavvealragqvDiaflgpl.ayvqardqagveplatrvrsdGsasyrsviivradsdiqsledLkgktiafvspsStsG 118
                     +e G +ve+++++   av++ +  gq+D++ ++   + +q+ + ++ + +a+      +++  ++i++ ++ +i s +dL+gk++a  +p+S+  
      KIR63018.1  68 KEAGFDVEIKPGQGTGAVIQTIVGGQADFGPIDLTgGLLQLGNGQAKDFVAVAAI---QQRTMAAIVTVEGKNIASPKDLEGKKLAD-APASVVR 158
                     689***************************9985516667776654444444444...347788888888889************97.5666777 PP

                     THHHHHHTCCCCT--HHHHSSEE.EE--HHHHHHHHHTTSSSE CS
  Phosphonate-bd 119 ylvpaalLvkeagldpeddfsev.fsgshdaavlavlsgdada 160
                      l+p +   + ag+d+ +    +   g  ++ +  ++sg +d 
      KIR63018.1 159 NLFPTYA--RLAGVDVNKV---TwVNGEPQTLMGTLASGSVDG 196
                     9999995..4488886643...313444555555777777775 PP

>> VitK2_biosynth  Menaquinone biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.04   1.8e+02      10      50 ..     159     195 ..     154     242 .. 0.70
   2 ?    9.4   0.1   0.00015      0.68     193     239 ..     239     288 ..     227     300 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.04
                     HHHHHHHHHHTTSS..SGCCEEEEEE-HHHHHHHHHTTS-S CS
  VitK2_biosynth  10 NdlflfyaLvegkvdsegleveivledpetlnrallegelD 50 
                     N ++ +  L  + vd +  +v+ v ++p+tl   l++g +D
      KIR63018.1 159 NLFPTYARL--AGVDVN--KVTWVNGEPQTLMGTLASGSVD 195
                     667777788..555554..7999***************999 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00015
                     HH...HHHHHHHHHHHHHHHHHHHSHHHHHHHHHCCSTTS.HHHHHHHHH CS
  VitK2_biosynth 193 aa...eaakeleealreSveyalahldevaeyaaeraqemddevlekhle 239
                     a+   e +k++  al++ +ey+la+++e+ae+++++   ++++ +++ l+
      KIR63018.1 239 AKekpEMVKRFSAALIKGLEYSLANPQEAAEMLKKNVDATNPAAAAAELQ 288
                     444568999************************99999988866666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2489.45
//
Query:       KIR63019.1  [L=393]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-42  146.1   6.9    2.4e-42  145.9   6.9    1.0  1  Peripla_BP_6  Periplasmic binding protein
    2.1e-27   96.2   0.0    2.7e-27   95.8   0.0    1.1  1  ANF_receptor  Receptor family ligand binding region
    8.9e-09   34.8   0.0    0.00015   20.9   0.1    3.0  3  Peripla_BP_5  Periplasmic binding protein domain
    0.00032   19.6   1.1    0.00043   19.2   1.1    1.2  1  LppC          LppC putative lipoprotein


Domain annotation for each model (and alignments):
>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   6.9   5.3e-46   2.4e-42       1     339 [.      35     383 ..      35     388 .. 0.88

  Alignments for each domain:
  == domain 1  score: 145.9 bits;  conditional E-value: 5.3e-46
                   EEEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEE CS
  Peripla_BP_6   1 pikiGlltplsGpyassgksllagaqaafeeiNaaGGinGrkielverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvi 97 
                   pi i++   lsG +a++gk++ ++ ++ +++ Na+G  + r+iel + D+ +d+++++++  ++ ++ +v a++ + +   a ++a +++++++p i
    KIR63019.1  35 PIVIAVDLELSGSAAPVGKAYQRALELKVDQMNASGALGARRIELKVKDNRSDASESLRNIGDFSNDSQVSAIIMGGCNECAVGAARTINEKKIPTI 131
                   5778888899**************************9999************************************99999999************* PP

                   ESS-HH....CCTTSTTEEESS--HHHHHHHHHHHHHHHTTSCEEEEEEESSHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHHHHHHHHTTT CS
  Peripla_BP_6  98 gpaglt....gekcspyvfslgpsysaqasalveylakelggkkvalvyadyafgregiaalkaaakaaGgevvgeepvplgttdfsaqvlqikaag 190
                     a+++    + +  +y f l+p+++++a+al   l++ +g++kv ++++d+++greg + l++ + +  ++++ +  v++++td+s qv+ ++a  
    KIR63019.1 132 ALASSSavatPVADRRYLFKLAPNAADSAAALTTELRR-RGIRKVTVLNSDDSYGREGLDVLRREFDKTNIKLLSDQSVKTTDTDVSQQVATLAARE 227
                   *66544343356999********************877.9********************************************************* PP

                   -SEEEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHHHHHHHHHHHHTTE..EEEES.CSTC.....CCSHHHHHHHHHHHHHHTTGGC--HHH CS
  Peripla_BP_6 191 adavllagtgadlaallkaaaeaGldakrillvswsgseedlkalggeaaegv..lavtp.yfpd.....ldnpavrafvaayeaayggapppsqfa 279
                   ++a ++++ ++++  ++ aa++aG+++  + +++++++e  l a    +ae +  +++++ + +d     +  +a r++ ++y+a++gg    + f+
    KIR63019.1 228 PEAMVVWTPPEQAMLAAGAAQTAGFTGS-LFFDASAAGELFLGASSR-SAERAtlIFTQTmVIDDviattPAKAARRQWFQDYTARFGG---YNGFS 319
                   **************************95.888888877766666655.777532233333255556644466777**************...79*** PP

                   HHHHHHHHHHHHHHHCC....THCCHHHHHHHHHHS-BECCCTCCBEECTTSBEE--EEEEEE- CS
  Peripla_BP_6 280 aggyiaadlllealkaa....gsltreavraaleslgfdgllgplkftaedhqasrpvyvvqvd 339
                   + + +a++l+++a  +a    g+  r+++r+ le+ ++dgl gp+ +t+++h +  p +++++ 
    KIR63019.1 320 SFAADAVQLIADAELRAggapGKAGRDGLRNVLETSQMDGLSGPIRMTPDNHSGLMPQALTTLV 383
                   *************999944444788999999999999*****************9999999865 PP

>> ANF_receptor  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.0   5.9e-31   2.7e-27       3     340 ..      56     371 ..      54     378 .. 0.84

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 5.9e-31
                   HHHHHHHHHHHHT-TTSSTTEEEEEEEEE-TT-HHHHHHHHHHHCCC.CEEEEEE-SSHHHHHHHHHHHCCTT-EEEESS---GGGG-TTTTTTEEE CS
  ANF_receptor   3 leAmklAveeinsdpnllpgiklgyeiidtccdfslaleaaldflkg.kvvaviGpssssvsdavaslanlfkiPvisygstspelsdknryptflr 98 
                   + A++l v++ n++ + l+ ++++++++d+ +d s +l+   df+++ +v a+i  ++++++  +a+  n+ kiP i  +s+s+  +      +++ 
    KIR63019.1  56 QRALELKVDQMNAS-GALGARRIELKVKDNRSDASESLRNIGDFSNDsQVSAIIMGGCNECAVGAARTINEKKIPTIALASSSAVATPVADRRYLFK 151
                   6799********99.788889*************************967************************************9999999***** PP

                   SS--CHHHHHHHHHHHHHTT--EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEESTCHHHCHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHH CS
  ANF_receptor  99 tvpsdtsqaqAivdilkhfgWkkvaliysdddygesglqaleeeleergicvalkekipessnddevvrkllkeikskarvivlfcssedarellka 195
                   ++p+++  a A+   l++ g +kv+++ sdd+yg++gl+ l+ e+++ +i++   ++++  ++d++v++++ + +++++ + v+ +++e a     a
    KIR63019.1 152 LAPNAADSAAALTTELRRRGIRKVTVLNSDDSYGREGLDVLRREFDKTNIKLLSDQSVK--TTDTDVSQQVATLAAREPEAMVVWTPPEQAMLAAGA 246
                   ***********************************************************..7899************99*************9999* PP

                   HHHTTS-STTEEEEETCHCCCECTTS-CC..HHHH.........HTT-EEEEE.--B-HHHHHHHHHST--CCCSSSTCCGSTTCCHHHHH...HHH CS
  ANF_receptor 196 arrlgltgeeyvwiasdawtsslvldkpeltglea.........aegvlgfrl.kdpnspkfsefldkreklsdekqnyenegkeqisyqaalmYda 282
                   a+ +g+tg    ++   a++  +  +++  + ++a         ++ v+  +  k + ++ f++++             +  g   +s++a    da
    KIR63019.1 247 AQTAGFTG--SLFFDASAAGELFLGASSR-SAERAtliftqtmvIDDVIATTPaKAARRQWFQDYT------------ARFGGYNGFSSFA---ADA 325
                   ********..8999655555555555554.222222332222223333333333334444444444............4566666688888...8** PP

                   HHHHHHHHHHHHCHHSSSHCCB-HHHHCCHHHHHHHHHHHT-EEEETTSCEEB-TTSB CS
  ANF_receptor 283 VyllaeAlnkllrkkkpgralscntlkpweggqkllrylrnvnfeGltGdvkfdengd 340
                   V l+a A  +++             +    g++ l + l++ +++Gl+G +++ ++++
    KIR63019.1 326 VQLIADAELRAG------------GAPGKAGRDGLRNVLETSQMDGLSGPIRMTPDNH 371
                   *******99999............334557889999999************9988775 PP

>> Peripla_BP_5  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   3.4e-08   0.00015       8      73 ..      43     108 ..      36     122 .. 0.89
   2 !    7.9   0.0   0.00029       1.3     128     194 ..     166     232 ..     151     240 .. 0.88
   3 ?    2.3   0.0     0.015        67     283     327 ..     324     372 ..     292     388 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.4e-08
  Peripla_BP_5   8 SlsGtmaisekslkdaallaieeinaagGvlgrkieavvvdpasdwelfaekaeklieedkvevvf 73 
                    lsG+ a + k+ ++a  l ++++na+g + +r+ie  v+d +sd++   ++  +  ++++v++++
    KIR63019.1  43 ELSGSAAPVGKAYQRALELKVDQMNASGALGARRIELKVKDNRSDASESLRNIGDFSNDSQVSAII 108
                   68*********************************************9999999999999999876 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00029
  Peripla_BP_5 128 llselgakrvflvGsdyvypretnrilkallkakggevvgeeYlplgssdvqkivakikkakpdvvl 194
                    l++ g+++v ++ sd  y re   +l+  + +++++ + ++ ++  ++dv++ va +++ +p++++
    KIR63019.1 166 ELRRRGIRKVTVLNSDDSYGREGLDVLRREFDKTNIKLLSDQSVKTTDTDVSQQVATLAAREPEAMV 232
                   5677899*****************************************************9999643 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.015
  Peripla_BP_5 283 iqvklwaqAveka....gstdvekvreallgqelkapeGevkidpenhh 327
                    +v+l+a A  +a    g++  + +r+ l  ++++ ++G+++++p+nh 
    KIR63019.1 324 DAVQLIADAELRAggapGKAGRDGLRNVLETSQMDGLSGPIRMTPDNHS 372
                   4577777777777444467778899999999**************9885 PP

>> LppC  LppC putative lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.1   9.6e-08   0.00043     217     410 ..      33     239 ..      15     287 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 9.6e-08
                 -----EEEEE--SSTTHHHHHHHHHHHHHHH.........TT--S-EEEEETTTS...-HHHHHHHHHHTT--E.EE---SHHHHHHHHHSGG.GTTSE CS
        LppC 217 tkltkvalLLPlsGklakvaetirdGFlaak......daetqsnaqvkvfDtaae...slediyaqakaagidl.vVGPLlkqnvdkllaqeqlvqsid 305
                 t +  +a+ L lsG++a v+++ +   +          a + +++++kv D  +    sl +i +  +  ++   + G      v +    +++  +i+
  KIR63019.1  33 TSPIVIAVDLELSGSAAPVGKAYQRALELKVdqmnasGALGARRIELKVKDNRSDaseSLRNIGDFSNDSQVSAiIMGGCNECAVGAARTINEK--KIP 129
                 5566688888888888888888887765433222333566789999999995443334899999999999987515687777777766665555..9** PP

                 EEES---TT---..BTTEEE----HH..HHHHHHHHHHHHTT-SSEEEEEESSHHHHHHHHHHHHHHHHHHSS-.-EEEEESSGGGHHHHHHHH-.TTT CS
        LppC 306 vLaLNssdnsra..iaqlcyfgLspE..deaesaAsklwadgvRnplvlvpqndlGrRvveAFnerwqqlagtd.aaielvdqpadlaqqlkdasrqdi 399
                 ++aL ss+   +    +   f L+p   d a++   +l   g+R++ vl + + +Gr +++    ++ +   +      +    +d++qq++    ++ 
  KIR63019.1 130 TIALASSSAVATpvADRRYLFKLAPNaaDSAAALTTELRRRGIRKVTVLNSDDSYGREGLDVLRREFDKTNIKLlSDQSVKTTDTDVSQQVATLAAREP 228
                 ********997743344566899987336677777899*****************************99887773444455566788888886666565 PP

                 EEEEE---HHH CS
        LppC 400 davyivanske 410
                 +a+ +   +++
  KIR63019.1 229 EAMVVWTPPEQ 239
                 55544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2645.05
//
Query:       KIR63020.1  [L=1057]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.9e-26   91.6  20.2    9.9e-26   91.6  20.2    2.3  2  NIT          Nitrate and nitrite sensing
    3.3e-08   34.0   0.0    6.2e-08   33.1   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    2.2e-06   28.0   1.6    1.4e-05   25.4   0.6    2.9  2  HAMP         HAMP domain
  ------ inclusion threshold ------
       0.15   12.5   0.5        4.4    7.8   0.2    2.9  2  FumaraseC_C  Fumarase C C-terminus


Domain annotation for each model (and alignments):
>> NIT  Nitrate and nitrite sensing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6  20.2   2.2e-29   9.9e-26       2     227 ..      79     314 ..      78     338 .. 0.85
   2 ?   -3.0   2.6       1.8   8.2e+03     176     176 ..     477     477 ..     405     561 .. 0.46

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 2.2e-29
         NIT   2 LvhaLQkERglsagylasgggerkaaelaaqraatDaalaalr......a.l.aglarrldallraldqLpalRrqv.dtrkldakeavaaYtdviaaL 91 
                 L+++L kER ++a  la +g++ + +e + + + tDa ++a+       +   a++++rl+ +++ l++L++ R+ v d ++++++ea  +Y  ++++L
  KIR63020.1  79 LTQDLHKERMAAATLLARPGEKGRVDEFNLRVRSTDARIEAYNaeragiGeVpADVRDRLKVIDDHLKTLNSTRQEVlDRKQMPVAEASLRYGVIVTDL 177
                 889**************9985544577**************99999***668899**********************8888****************** PP

         NIT  92 ldladelaqgspdrelarqlralaalsrakEalsqerallaaalaagrfsaalyaaflslvarqqaalaefraaatpaqralydetvtgpavkaaetlr 190
                  +++d+laq  + ++la++ ra+aa+++ak a++ e+a+  +al++gr++++++++f ++ ++qq+al +f+ +a+paqral d tv+g av  a++++
  KIR63020.1 178 VSYNDTLAQLPGQEALADNRRAVAAFAHAKAAVAEEQAVAYTALSSGRLDEEQFSSFVATLTSQQEALVSFSLSADPAQRALVDGTVSGDAVVLADRVA 276
                 *********9999**************************************************************************999********* PP

         NIT 191 dr.l.a......stggvdaedeeeWfaastaridqlravesrlad 227
                 ++ + +           +a+d     a+  ++ d++r +e +l  
  KIR63020.1 277 ADlTrSvgqtplV----TAAD---VSASVGSVNDLMRWAEIQLQR 314
                 9976433322221....4444...555555555555444444433 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.8
         NIT 176 e 176
                 +
  KIR63020.1 477 Q 477
                 1 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.4e-11   6.2e-08       6     110 ..     549     652 ..     545     654 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.4e-11
                 HHHHHHHHHHHHHHHHSTTTEEEEEEEEEE....TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTT CS
   HATPase_c   6 LrqiisnlvdNavkfatkageieveikase....ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgr 100
                 + +++ +l+dNa +f ++ +++ v          d++ i+veD G G++ e+l+ l  ++s   st +    + +Gl++v +l++++g +++++ + ++
  KIR63020.1 549 VVRLVAELLDNATRF-SPPNTVVV--AD-GrrirDYVLIQVEDRGLGLTDEQLDSLNRRLSA-PSTVDVAAFRLMGLAVVSRLASRYGIRVELRRNVEG 642
                 6789***********.44444433..32.123457*******************77778888.777777777777*******9999*******9999** PP

                 EEEEEEEEES CS
   HATPase_c 101 Gttftftlpl 110
                 Gt  ++tlp 
  KIR63020.1 643 GTVAQVTLPA 652
                 *******997 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.6   3.1e-09   1.4e-05       1      51 [.     351     426 ..     351     428 .. 0.87
   2 ?   -3.6   0.0       3.5   1.6e+04      24      41 ..    1016    1029 ..    1012    1032 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 3.1e-09
                 HHHHTTHHHHHHHHHHHHHHTTT.........................BTSSTCCTTSSSHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaG.........................dldtrlpvsgrDEiGeLarafNaMldrL 51 
                 +lar++ ++LrrL++ a ++a+                          +++ ++  + rDE+G++a afN+ +++ 
  KIR63020.1 351 VLARSLNHSLRRLREGALSVANHdlpdavqrlqsignvgdggveeivrQVRDPIKLTNRDEVGQVALAFNVVHREA 426
                 69*******************97677777788888888888888888877778999**************999876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.5
                  BTSSTCCTTSSSHHHHHH CS
        HAMP   24 dldtrlpvsgrDEiGeLa 41  
                  d + r    ++DE++ L 
  KIR63020.1 1016 DRSRR----TPDEVRGLL 1029
                  55666....89**99775 PP

>> FumaraseC_C  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2   0.00098       4.4      18      47 ..     206     235 ..     201     239 .. 0.89
   2 ?    1.3   0.0      0.11   4.8e+02      23      46 ..     572     600 ..     570     603 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00098
                  HHHHHHHT--HHHHHHHTT-.-HHHHHHHT CS
  FumaraseC_C  18 AkeAlkegktlreavlelgllteeeldell 47 
                  Ak A++e + +   +l  g l+ee++   +
   KIR63020.1 206 AKAAVAEEQAVAYTALSSGRLDEEQFSSFV 235
                  9*************************8766 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.11
                  HHT--HHHHHHH....TT-..-HHHHHHH CS
  FumaraseC_C  23 kegktlreavle....lgl.lteeeldel 46 
                  ++g+ +r+ vl     +gl lt+e+ld l
   KIR63020.1 572 ADGRRIRDYVLIqvedRGLgLTDEQLDSL 600
                  678999998885465688899*****976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1057 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 7242.12
//
Query:       KIR63021.1  [L=135]
Description: dynein regulation protein LC7 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-23   81.3   0.4    4.4e-23   80.9   0.4    1.2  1  Robl_LC7  Roadblock/LC7 domain


Domain annotation for each model (and alignments):
>> Robl_LC7  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.4   2.5e-27   4.4e-23       1      91 []      10     101 ..      10     101 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 2.5e-27
                 HHHHHHHHCCHHCTECEEEEEETTS-EEEE.CCSSSS-HHHHHHHHHHHHHHHHHHHHHCTSSSECEEEEEETTEEEEEEECTTTEEEEEEE CS
    Robl_LC7   1 lveelleelqsvpgvrgalvvskdGlviat.stldnddadqlAalasgllsaakaaarelgegelkelliegkkgelyltpagegalLvvla 91 
                 + ++l++  +sv+g+ +++ vs+dGl++a+  +l++d+adqlAa++sg++s++++aar++ +g++ +++ie+++g+l+l++  +g+ ++vla
  KIR63021.1  10 MGWLLTNFADSVAGIAHVVAVSADGLLLASsRDLPPDRADQLAAITSGVVSLTEGAARMFSAGGVLQTVIEMDSGYLFLMSISDGSSMAVLA 101
                 5799*************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1043.85
//
Query:       KIR63022.1  [L=121]
Description: hypothetical protein TK50_19110 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-28   97.8   0.7    3.6e-28   97.6   0.7    1.0  1  DUF742    Protein of unknown function (DUF742)
  ------ inclusion threshold ------
      0.011   15.5   0.1       0.02   14.7   0.1    1.4  1  HTH_IclR  IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DUF742  Protein of unknown function (DUF742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.7   4.1e-32   3.6e-28       3     114 .]       9     121 .]       7     121 .] 0.94

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 4.1e-32
      DUF742   3 kgalvRpyaltgGrtrpeedldletlvvaeagape.aarlqpehrailrLcre.plsVaelaAelklPvgvvrvLlsdLldaglltvrapvtdraaeqp 99 
                 +galvRpya+t+Grt+p++d++le++++a + a   +  ++ ++++i  +c+  p+s ae+aA++++P+gv+rv+++d+++ gllt +++++  ++ ++
  KIR63022.1   9 RGALVRPYAVTRGRTEPRQDIALEAVLTASPTAVAeSRFAGHDKHRIATICEGrPQSLAEVAAYTRMPLGVARVIVADMVAEGLLTLHTAAPA-EGYEE 106
                 679***************************987654888999**********99**********************************99998.7799* PP

      DUF742 100 drelLeevlsGLrrl 114
                 + e+L +vlsGLrrl
  KIR63022.1 107 RMEILGRVLSGLRRL 121
                 *************97 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   2.2e-06      0.02      16      50 ..      61      95 ..      55      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.2e-06
                BSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR 16 pqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                +++ +l+e+A+ t +p   ++ +++ +v +G+++ 
  KIR63022.1 61 GRPQSLAEVAAYTRMPLGVARVIVADMVAEGLLTL 95
                45669***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 945.20
//
Query:       KIR63023.1  [L=207]
Description: ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-28   99.7   0.7    5.6e-27   95.1   0.7    2.5  1  ATP_bind_1   Conserved hypothetical ATP binding protein
     0.0017   17.9   0.0     0.0033   17.0   0.0    1.5  1  GTP_EFTU     Elongation factor Tu GTP binding domain
     0.0025   17.7   0.0       0.13   12.2   0.1    2.2  2  RsgA_GTPase  RsgA GTPase
     0.0057   16.3   0.3      0.069   12.7   0.3    2.4  1  Ras          Ras family
  ------ inclusion threshold ------
      0.023   14.3   0.0        1.4    8.5   0.0    2.1  2  FeoB_N       Ferrous iron transport protein B
      0.039   14.2   0.2       0.53   10.5   0.4    2.5  2  Roc          Ras of Complex, Roc, domain of DAPkinase
      0.039   14.3   0.0      0.051   14.0   0.0    1.3  1  AAA_16       AAA ATPase domain
      0.048   12.7   0.5      0.067   12.2   0.5    1.2  1  T2SSE        Type II/IV secretion system protein
      0.055   13.5   0.1      0.085   12.9   0.1    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
       0.18   11.5   0.2       0.25   11.0   0.2    1.3  1  AAA_24       AAA domain
       0.31   11.3   1.4       0.63   10.3   1.4    1.5  1  AAA_28       AAA domain
       0.78    9.6   2.8       0.49   10.3   0.9    1.6  2  NTPase_1     NTPase


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.7   3.7e-30   5.6e-27       1     238 [.      24     190 ..      24     193 .. 0.86

  Alignments for each domain:
  == domain 1  score: 95.1 bits;  conditional E-value: 3.7e-30
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDPAaeelpYeaavdirelitledvmed..lglgpngalvvaleflresldwldeelekeeddyllfD 97 
                 v+G++G+GKtt+vga+sei++l+                       ++ ++t + v  d   ++  +++++va++f+r+++   +e+l      ++lf+
  KIR63023.1  24 VAGGFGVGKTTLVGAVSEITPLT-----------------------TEAVMTSAGVGIDdpSKVPGKQTTTVAMDFGRITM---AEDL-----ILYLFG 91 
                 89*********************.......................***********999*********************...9999.....9***** PP

  ATP_bind_1  98 tPGQielfthseslakiveeLesefalvvvyLvDsqrltd...ptkfisgllsalsamlrlelPhvvvlnkfDllkeklekeleffedvealsllleke 193
                 tPGQ ++++++++          ++a+++ +LvD++r+td   p +++++           +lP+vv+ln+fD++                        
  KIR63023.1  92 TPGQTRFWFMWDEII--------KGAVGAAVLVDTRRITDafaPLDYFEN----------RRLPYVVALNRFDGAP----------------------- 149
                 ***************........9****************9999******..........**************55....................... PP

  ATP_bind_1 194 eekykklaeaiaelleefalvlrflplssekeesiedllslidea 238
                     ++  e+++e+l     v+ ++++++++e   ++l++++++a
  KIR63023.1 150 ----QYELEEVREALAISPQVPLIMTDARHREPVKQVLVTVVEHA 190
                 ....44555566666666666556666666666666666665555 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.2e-06    0.0033       5     147 ..      21     161 ..      17     192 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.2e-06
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST..HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEE CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv..lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvv 101
                 +i+++g    GKtTL++++ + t  ++++ ++  +  +    + +  +   + ++   i++    ++  + l  tPG   F     + ++ + ga ++v
  KIR63023.1  21 KIVVAGGFGVGKTTLVGAVSEITPLTTEAVMTSAGVGIddPSKVPGKQTTTVAMDFGRITMA---EDLILYLFGTPGQTRFWFMWDEIIKGAVGAAVLV 116
                 6899*****************99999998887744333225566777777777788888888...9999999***********99999999******** PP

                 ETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST.HHHHHHHHHHHH CS
    GTP_EFTU 102 daveGvepqteevlrlalkegvpiivfiNKmDrl.kaelkeiveevk 147
                 d ++   +     l    ++++p +v++N  D + + el+e+ e++ 
  KIR63023.1 117 DTRR--ITDAFAPLDYFENRRLPYVVALNRFDGApQYELEEVREALA 161
                 *995..45556789999***************999999999988876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   8.7e-05      0.13     100     137 ..      20      57 ..      13      94 .. 0.87
   2 ?    3.5   0.0     0.039        58      41      94 ..     130     183 ..     119     201 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.7e-05
                  SEEEEECSTTSSHHHHHHHHCTT-----S--------- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevseklgrG 137
                    +v++G  GvGK+tL+ a+ + + l t++v ++ g G
   KIR63023.1  20 AKIVVAGGFGVGKTTLVGAVSEITPLTTEAVMTSAGVG 57 
                  56799***************999999999998887766 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.039
                  HHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHH.HTTSEEEE--TTTHTTHHHHH CS
  RsgA_GTPase  41 laeekgiepvivlnKiDlleeeeeleelkeele.algyevllvsaktkegleelk 94 
                   +e+++++ v++ln+ D + + e lee++e+l+ + ++++++++a+++e ++++ 
   KIR63023.1 130 YFENRRLPYVVALNRFDGAPQYE-LEEVREALAiSPQVPLIMTDARHREPVKQVL 183
                  57889999*************99.8877777652556888888888887777654 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.3   4.6e-05     0.069       1     159 [.      21     189 ..      21     192 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.6e-05
                 EEEEEESTTSSHHHHHHHHHHSS.CSSSCTTT...SSEE.......EEEEEEEET......TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETT CS
         Ras   1 KlvlvGdsavGKtslllrfvkdk.FkeeyesT...igvd.......fytkeievd......gkevkleiwDTAGqeefkslrelyyrdaegillvydit 82 
                 K+v+ G  +vGKt+l+    + +  ++e  +T   +g+d       ++t+++ +d       +++ l ++ T Gq +f  + +  +++a g+ ++ d  
  KIR63023.1  21 KIVVAGGFGVGKTTLVGAVSEITpLTTEAVMTsagVGIDdpskvpgKQTTTVAMDfgritmAEDLILYLFGTPGQTRFWFMWDEIIKGAVGAAVLVDTR 119
                 89*************98766543244444444333777788888777777777778888888899999**********************999987753 PP

                 BHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHH CS
         Ras  83 sresfenvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellre 159
                       ++++ +  +    ++++p v+  n+ D + + ++++ + e+la + +++ + t A+++e v++++ +++++
  KIR63023.1 120 ------RITDAFAPLDYFENRRLPYVVALNRFDGAPQYELEEVR-EALAISPQVPLIMTDARHREPVKQVLVTVVEH 189
                 ......46666666777777778888888888888777766544.66888888888888888888888888888776 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.022        33       2      23 ..      21      42 ..      20      75 .. 0.81
   2 ?    8.5   0.0   0.00091       1.4     104     153 ..     134     183 ..     110     186 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.022
                EEEEEESTTSSHHHHHHHHHTT CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltga 23
                +++++G   vGkttl+ a+++ 
  KIR63023.1 21 KIVVAGGFGVGKTTLVGAVSEI 42
                7899***********9988764 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00091
                 TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH CS
      FeoB_N 104 lgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieell 153
                  ++p v+aln +d a + ++e   ++L+ + +vp + t a+++e ++++l
  KIR63023.1 134 RRLPYVVALNRFDGAPQYELEEVREALAISPQVPLIMTDARHREPVKQVL 183
                 46899***************************************999986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00035      0.53       1      89 [.      21     118 ..      21     147 .. 0.58
   2 ?   -0.4   0.0      0.86   1.3e+03      56      99 ..     140     183 ..     127     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00035
                 EEEEESSTTSSHHHHHHCHCT-CCC-E....EETTTTEEEEE....EECGGSG.GCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEG CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsek....ekstigvdflt....kevtkik.gvendkkvkkvklniWDtaGqerfrslhplylreaalailvyds 89 
                 K+v+ G  gvGKt+l+  + e +  ++    +++ +g+d  +    k++t++   +   +  +++ l ++ t Gq+rf  + +  +++a  a +++d+
  KIR63023.1  21 KIVVAGGFGVGKTTLVGAVSEITPLTTeavmTSAGVGIDDPSkvpgKQTTTVAmDFGRITMAEDLILYLFGTPGQTRFWFMWDEIIKGAVGAAVLVDT 118
                 99**************9988755433300112333344322222222222222111122334456666666666666666666666666666655555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.86
                 EEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHH CS
         Roc  56 vklniWDtaGqerfrslhplylreaalailvydsrssenlkeWl 99 
                 v ln +D a q + +++++    + ++ ++++d+r+ e +k+ l
  KIR63023.1 140 VALNRFDGAPQYELEEVREALAISPQVPLIMTDARHREPVKQVL 183
                 67888888999999999999999999999999988877766655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.4e-05     0.051      27     154 ..      22     155 ..      10     199 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.4e-05
      AAA_16  27 vllsGesGvGKsslvrellr..alekdggiflrgkcdqlesa......ipysa.laqalareellrqllde.aesaeleawrekleealaavpelagae 115
                 +++ G  GvGK++lv ++ +  +l+++ + + +g   + +s+      ++ ++ + ++  +e+l+  l     +++ +  w+e +++a++   ++   +
  KIR63023.1  22 IVVAGGFGVGKTTLVGAVSEitPLTTEAVMTSAGVGIDDPSKvpgkqtTTVAMdFGRITMAEDLILYLFGTpGQTRFWFMWDEIIKGAVG---AAVLVD 117
                 6799999********999976677877677788888888555233333444666777777777777666555899999999999999888...333333 PP

      AAA_16 116 asrllellkrllallsrderplvlvlDdlqwadeaslql 154
                  +r+ ++++  l++ ++++ p v+ l  ++ a +  l+ 
  KIR63023.1 118 TRRITDAFAP-LDYFENRRLPYVVALNRFDGAPQYELEE 155
                 3666666543.3566666667777777777665544444 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   4.5e-05     0.067     130     175 ..      20      70 ..      13      87 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.5e-05
       T2SSE 130 glilvsGgTgsGKttllyallkeinksderivt.....vEDpvEiqlegan 175
                   i+v+Gg g GKttl+ a+ ++ + ++e ++t     + Dp  +  ++  
  KIR63023.1  20 AKIVVAGGFGVGKTTLVGAVSEITPLTTEAVMTsagvgIDDPSKVPGKQTT 70 
                 579****************99999998888887444446666655555554 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   5.7e-05     0.085       1      56 [.      21      95 ..      21     190 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.7e-05
                EEEEEESTTSSHHHHHHHHHT..................STEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGC CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltg..................ekaivsdkpgtTrdinegrvklkg.keielvDtpGl 56
                +++++G   vGK+tL+ a ++                  + ++v  k+ tT  + +gr+++ +   ++l  tpG 
  KIR63023.1 21 KIVVAGGFGVGKTTLVGAVSEitpltteavmtsagvgidDPSKVPGKQTTTVAMDFGRITMAEdLILYLFGTPGQ 95
                5899***************96666666666666666664589999999**********99655477899999993 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00017      0.25       2      31 ..      19      47 ..      18      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
      AAA_24  2 klkiliyGpsgiGKTtlakelgpkplfidt 31
                ++ki++ G  g+GKTtl+     ++  + t
  KIR63023.1 19 SAKIVVAGGFGVGKTTLVGAV-SEITPLTT 47
                68**************99777.55555555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.4   0.00042      0.63       1      21 [.      21      41 ..      21      58 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00042
      AAA_28  1 kivitGgestGKTtlleaLaa 21
                kiv+ Gg + GKTtl+ a ++
  KIR63023.1 21 KIVVAGGFGVGKTTLVGAVSE 41
                79**************99886 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.9   0.00033      0.49       1      21 [.      21      41 ..      21      53 .. 0.89
   2 ?   -2.4   0.0       2.5   3.8e+03     124     136 ..     164     176 ..     153     196 .. 0.46

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00033
                EEEEE--TTSSHHHHHHHHHH CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvle 21
                k+++ G  GvGKtTlv  v+e
  KIR63023.1 21 KIVVAGGFGVGKTTLVGAVSE 41
                689*************99987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.5
                 TTSEEEEE--SS- CS
    NTPase_1 124 sekpvlavihrrk 136
                 +++p++++  r++
  KIR63023.1 164 PQVPLIMTDARHR 176
                 4455555433332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1507.70
//
Query:       KIR63024.1  [L=362]
Description: bifunctional uroporphyrinogen-III synthetase/response regulator domain protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-38  131.0   0.5    5.6e-38  130.6   0.5    1.2  1  HEM4         Uroporphyrinogen-III synthase HemD
      4e-11   42.8   0.0      1e-10   41.5   0.0    1.7  1  Trans_reg_C  Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
      0.012   16.1   1.2      0.046   14.2   0.8    2.1  1  DinB_2       DinB superfamily


Domain annotation for each model (and alignments):
>> HEM4  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.5   9.4e-42   5.6e-38       1     231 [.      19     258 ..      19     259 .. 0.93

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 9.4e-42
                 .HHHHHHHHTTEEEEE---EECCECCHHHHHHHHHT.....--SEEEE--HHHHHHHHHHHH...HTT---HHHHHCSEEESSHHHHHHHHHTT---SE CS
        HEM4   1 delaealearGaeplelPlieiepaedraelraalddleagkydwliftSanavealfealk...reeedvkalaslkvaavGpaTaraLeelglrvdl 96 
                 dela++l++rGa ++++P+++i+p +d+ +lr+a ++  a+ +d+l + +  +++ ++ea++    +e +  +l+++ v+a+Gp+++ a++++gl++ +
  KIR63024.1  19 DELAALLQRRGARVVIAPALRIVPLTDDTDLREATRECLARPPDVLMANTGIGMRGWLEAAEgwgLAEPLRGVLSQAYVVARGPKARGAIRAAGLHDQW 117
                 689********************************9999***********************9999999999999************************ PP

                 E-..SSSHHHHGGGS-.---EEEEEE..-SS.S--HHHHHHHHHTTEEEEEE-SEEEEE-HH..HHHHHHHHHHTT--SEEEESSHHHHHHHHHH-S-H CS
        HEM4  97 vpseegtaegLaeelaeslagkrvll..lrgeiarddlaegLeergaevdevevYetvpaee..epeelkealkagevdavvftSpstvrnllellkde 191
                  p  +++ e+++e l  +  +++v++  l+g +++++  ++Le +ga+v ev+vY++ p+++    ++l +++  + vdav+ftS+ ++++ll++++d+
  KIR63024.1 118 SPD-SESCEEVVEHLVRRGVAGQVIAmqLHG-DRQPECTSALEDAGATVIEVPVYRWAPPTDpaPLHRLIDLVAGRLVDAVTFTSAPAAEALLRAAGDR 214
                 **9.*********999866664544447***.5************************666555677888888988999********************9 PP

                 H.....HHHCTSEEEEESHHHHHHHHHTT---SEEETS--HHHHH CS
        HEM4 192 g.....delkevkvaaiGptTaealkklglkvdvvaeeptaeglv 231
                       +  ++v + ++G +Tae l + g++v   +++++ ++lv
  KIR63024.1 215 TetvleALRGDVLASCVGAVTAEPLVRRGVPV-SAPSRARLGALV 258
                 9****9999***********************.999999999998 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   1.7e-14     1e-10       6      77 .]     295     359 ..     290     359 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1.7e-14
                  -SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   6 ltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  l p  +++L++L+ +pgrv+sr+ Ll+ + +     d+++v+++++rLR  L++    pr+++tv ++GYrl
   KIR63024.1 295 LAPAPMAVLRALATSPGRVLSRTALLRTLPRGA---DEHAVEMAVARLRAGLKA----PRVVQTVVKRGYRL 359
                  788899***********************9865...6*****************....8***********97 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.8   7.8e-06     0.046      19     114 ..     111     222 ..      99     226 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.8e-06
      DinB_2  19 eelnrqpspgkwsiawllaHlgn...veelllerlrgeeap...............rpgldpltppsaaealaylaevrarllallealtdadldrplt 99 
                 + l+ q sp++ s+ ++++Hl+    + ++++  l g+++p                p +++++p+++a +++ ++ v +rl + ++ +++ ++++ l+
  KIR63024.1 111 AGLHDQWSPDSESCEEVVEHLVRrgvAGQVIAMQLHGDRQPectsaledagatvieVPVYRWAPPTDPAPLHRLIDLVAGRLVDAVTFTSAPAAEALLR 209
                 6789999***************99878888888999*****999999999999888799999999*******************999999988888877 PP

      DinB_2 100 aphpglgkltlgdvl 114
                 a+  g ++ t++++l
  KIR63024.1 210 AA--GDRTETVLEAL 222
                 77..88888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2733.84
//
Query:       KIR63025.1  [L=674]
Description: nitrite reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-71  242.1   0.0    1.3e-71  241.9   0.0    1.0  1  Molybdopterin    Molybdopterin oxidoreductase
    6.6e-35  119.5   0.0    1.2e-34  118.6   0.0    1.5  1  Molydop_binding  Molydopterin dinucleotide binding domain


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.9   0.0   1.4e-75   1.3e-71       1     431 [.      40     468 ..      40     469 .. 0.92

  Alignments for each domain:
  == domain 1  score: 241.9 bits;  conditional E-value: 1.4e-75
                    B--S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHH....CHH CS
  Molybdopterin   1 RlkyPmvRkqargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfydwyadlppasaq....qti 92 
                    Rl++P+vR    g G+++++sW eA+e +a  ++++++ +g d+va+f+ g+l+ +e  ++l k+++   +  +  +d +++ +++sa+    +++
     KIR63025.1  40 RLTTPLVR--DAGTGQLRPASWAEAMERVAGGVRAVQDRHGRDAVAVFGGGGLT-NEKAYALGKFARVALR--TRHVDYNGRWCMSSAAaagnRAF 130
                    9*******..788*****************************************.9***************..9***************5555555 PP

                    CCCCCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC-EEEEECSSB-HCGGGCSEEEEEHTTTHHHHHHHHHHHHHHCCCCTC CS
  Molybdopterin  93 gsdsrsnyessnpledlensdliilwGsNvreerpilnarirkaalkkkakvivigpryaellkfadewlaikpgtdaalalamghvilqelkvdk 188
                    g     +  +  pl+dl  ++  +++G+N++e++p+l +r  + ++ ++  +iv++pr ++++++ad++l + pgtd+ala+a+ h  l+e++vd 
     KIR63025.1 131 GV----DRGLPFPLADLGRARTLLMVGANPAETMPPL-MRHVADQQAAGGTLIVVDPRATATARQADLHLQPVPGTDLALANALLHIALTEGYVDR 221
                    55....5679999************************.4444444444577********************************************* PP

                    HHHHHHEECHHHCCCCCCCEECCSHHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHHHHHHHHHCTHCSSTTCEEEEESSCTT CS
  Molybdopterin 189 eflrkytygkeetdmpllvtleeetgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyravinLallvgnvgqpgGgwahlnGqli 284
                    + ++ +t+g++e++  + ++ + e++  ++v+++     ar a +tag+++i+   g+ ++++g +++ a inLal++g  g+pg+g++ l+Gq +
     KIR63025.1 222 AYVAERTTGFDEVRRTVAGYWPAEVERLTGVPVADLEATAR-ALATAGSAIILTARGAEQHAKGVDTVTAFINLALALGLPGRPGSGYGCLTGQGN 316
                    **********************************9988776.5667777*********************************************** PP

                    HHHCHHHHTCCTTCCCCCCCTT......HHHHHCCCTTTCSTSS--ECGGCHHHHHH.TTSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEEEE CS
  Molybdopterin 285 lagaaekvgalpvllsvkslke......ekikfaaeqpgnlgnfprnlfversnllk.ssgkkvlyllgnnpevdhadenevekalekldlvvvld 373
                     +g ++++g+++ +l+ +++ +      +  +++    ++l+  p+  +++  + l+   g+k+l + g+np+v+++ + +ve  l++ldl+vv d
     KIR63025.1 317 GQG-GREHGQKADQLPGYRSITdpaaraHVAGVWGVSADELPG-PGVPAYQLLDSLGtPAGPKALLVFGSNPVVSAPRAARVEGRLRDLDLLVVAD 410
                    ***.8888888899999999999**999888888888888887.77777776666652579*********************************** PP

                    SCSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEEEEESSS-STT-BEHHHHHHHHHH CS
  Molybdopterin 374 grltstalyaDiiLPaatwyEkedlytndegrfqhlkqavsppgeaksdwkIlkaLak 431
                       ++ta+ aD++LP+a w E+++++tn egr+ +++++  pp   ++d  I+ +La+
     KIR63025.1 411 LVRSETAELADVVLPTAQWAEEDGTMTNLEGRVLRRRAVRTPPAGVRTDLAIIADLAD 468
                    ********************************************************97 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   0.0   1.4e-38   1.2e-34       1     111 []     559     666 ..     559     666 .. 0.99

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 1.4e-38
                      EEEEEE-BTTBSTTTTTCGCCHHHHCSSS.-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC.....S-GHCT CS
  Molydop_binding   1 lrLitgrsldqlhsqtrtrpvlrlakpep.evveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwweagekggnaNal 93 
                      lrL+tgr+l q++s+++tr+v +l++ +p ++ve++p+ Aa+lG+ dG+ V+v+srrG+++++a++t+++rp++vf+pf+w+     ++ aN++
       KIR63025.1 559 LRLTTGRVLAQYQSGAQTRRVAALRRAAPgAFVELHPDLAARLGVGDGEDVRVTSRRGELRAPARLTPTIRPDTVFAPFHWGG----AARANSV 648
                      79*********************************************************************************....******* PP

                      S--SCSTTT--CSTT-EE CS
  Molydop_binding  94 tddatdplsgtpefksva 111
                      t+da+dp+sg+pefk +a
       KIR63025.1 649 TNDAVDPVSGMPEFKICA 666
                      ***************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4935.37
//
Query:       KIR63026.1  [L=85]
Description: hypothetical protein TK50_19150 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 581.55
//
Query:       KIR63027.1  [L=455]
Description: nitrate transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-18   64.6  84.3    2.4e-15   56.4  44.0    2.2  2  MFS_1     Major Facilitator Superfamily
     0.0041   17.1   1.4        1.5    8.7   0.2    2.5  2  DUF4271   Domain of unknown function (DUF4271)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4  44.0   2.6e-19   2.4e-15       9     328 ..      57     367 ..      47     376 .. 0.78
   2 !   22.2  32.4   6.5e-09   5.9e-05       2     178 ..     257     449 ..     253     454 .. 0.83

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 2.6e-19
       MFS_1   9 alarsilgpalplalaedlg..ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.....sslwlllvlrvlqGlgag 100
                 +++ ++l++++     +d g  +s s++ +l+++ + + a++ lp+ + +  fG r + ++++ll++l +l l++a     +++ +ll+  + +Glg g
  KIR63027.1  57 GFSVWLLWSIVV-VRLDDVGwqLSTSQALWLTAVPSGVGALLRLPYTFAVPIFGGRNWTIVSALLLVLPCLGLAWAvenpeIGYVPLLLIAATAGLG-G 153
                 566677888887.67788884456666999***************************9999999999998888897777777777899999999**9.8 PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpapl 196
                 + f++++a i+  +p++e+g a+gl +ag ++G+++   l + ++ ++g    + + ++  ++++ a+v+++l++   + +++ ++p            
  KIR63027.1 154 GNFASSMANISFFYPEREKGWALGLNAAGGNIGVAVVQFLVPQVVVLGGglaLSRAGLMYVPLAVAAAVCAYLFMDNLAEAKADVKP------------ 240
                 9999999*****************************977777666566656655557777777777777877777555555555544............ PP

       MFS_1 197 vpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglalla 295
                   ++++l++    wi+ +  +++f  f g+++ +p++l++v+g +   l+     ++a +g ++++l+grl+dr+g  r ++ +++l++++a g ++  
  KIR63027.1 241 --VLSSLRHAD-TWIMSLLYIGTFGSFIGYSAAFPTLLNSVFGRPDIALSW--AFIGAGIGSFFRPLGGRLADRMGGARVTIGSFVLMAVGAYGALWSV 334
                 ..345555555.57555555555667777****************446666..899999******************9999999999999999999999 PP

       MFS_1 296 vtssavllllvlvliGfglgfvfpsllalasdl 328
                    s  ++ ++++l+ ++ g+ ++s   ++s+ 
  KIR63027.1 335 QERSLGVFFAAFMLLFVATGIGNGSTYRMISKI 367
                 995555555555554446666566666555555 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 6.5e-09
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslw.lllvlrvlqGl 97 
                 ++++f s++++s+   a+p +l++ +g    ++++++ + ++  +++ +++Grl+dr+G  rv + +++l+a+g++ +l++    +  +++++ +l  +
  KIR63027.1 257 YIGTFGSFIGYSA---AFPTLLNSVFGRPDIALSWAFIGAGI-GSFFRPLGGRLADRMGGARVTIGSFVLMAVGAYGALWSvqERSLgVFFAAFMLLFV 351
                 4555555555555...555556899**99999***9999888.789****************************7777786675566688888889999 PP

       MFS_1  98 gagalfpagaaliadwfpke................ergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeeppe 178
                 ++g+++ + + +i+++f  +                + + a+g++s+  ++G  l p+  ++   +++g + +  +  +++l+++v+ ++ ++++ ++
  KIR63027.1 352 ATGIGNGSTYRMISKIFRVKgedlggspetmlsmrrQAAGALGIISSVGAFGGFLVPICYAWAKsTYGGIQPALRFYVGFFLVLLVVTWVAYVRPGSR 449
                 9999999************999************9999***********************9997888899997777777777777766666666555 PP

>> DUF4271  Domain of unknown function (DUF4271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.2   0.00017       1.5      54     125 ..     212     291 ..     206     299 .. 0.87
   2 !    7.0   0.1   0.00056       5.1       4     106 ..     341     443 ..     338     447 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00017
     DUF4271  54 lllltclllglllylllsefgslfgsyla........ssllllliiflilllylllKlllykllgwlFfdkkkirqwifs 125
                 +++   +  +++ yl++++    + +  +        +++++ l++++ +  ++ +   +  ll+++F   +++ +w f+
  KIR63027.1 212 MYVPLAVAAAVCAYLFMDNLAEAKADVKPvlsslrhaDTWIMSLLYIGTFGSFIGYSAAFPTLLNSVFGRPDIALSWAFI 291
                 566677888999999999977766665559999****************************************9999885 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00056
     DUF4271   4 llllcflllalaksrfrkffsrllklffnnkereslfkeetksesrfqlflllltclllglllylllsefgslfgsylassllllliiflilllylllK 102
                 ++++ f+ll +a  ++    +r+++ +f+ k  +  ++ et  ++r q    l  + ++g +  +l+  +  + +s++      l ++++++l++l++ 
  KIR63027.1 341 VFFAAFMLLFVATGIGNGSTYRMISKIFRVKGEDLGGSPETMLSMRRQAAGALGIISSVGAFGGFLVPICYAWAKSTYGGIQPALRFYVGFFLVLLVVT 439
                 79999*****************************************99999999999999776666666666666666655555555666666666666 PP

     DUF4271 103 llly 106
                 +++y
  KIR63027.1 440 WVAY 443
                 6555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3002.86
//
Query:       KIR63028.1  [L=147]
Description: 50S ribosomal protein L13 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-57  191.0   0.1    8.3e-57  190.8   0.1    1.0  1  Ribosomal_L13  Ribosomal protein L13


Domain annotation for each model (and alignments):
>> Ribosomal_L13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.8   0.1   4.6e-61   8.3e-57       1     124 [.      14     137 ..      14     138 .. 0.99

  Alignments for each domain:
  == domain 1  score: 190.8 bits;  conditional E-value: 4.6e-61
                    -EEEEEETTSBHHHHHHHHHHHHHTTTSTT--TTS--S-EEEEEEGGCBB-SSTHHTT-EEEEE-SSTTSEEEEEHHHHHCCSHHHHHHHHHHCCS CS
  Ribosomal_L13   1 kWyviDAegqvlgrlaskiakvLrGkhkptytphvdcGdyvvvinaekvaltgkkleqkvyyrhtgypgglkevtakellekkpeeilekaVkgmL 96 
                    +W+viDA++ vlgrla+++a++LrGkhkpt+ phvd+Gd+vvv+na kvaltg+k +qkv yrh+gypgglk+v ++ell+k+pe+++e+aVkgmL
     KIR63028.1  14 QWHVIDASDVVLGRLATHAATLLRGKHKPTFAPHVDTGDFVVVVNAGKVALTGNKRQQKVAYRHSGYPGGLKQVGYEELLSKRPERAIELAVKGML 109
                    6*********************************************************************************************** PP

                    -SSHHHHHHGCTEEEESSSTTSGGGGSC CS
  Ribosomal_L13  97 pknklgrrrlkrLkvyageehpheaqkp 124
                    p+nklgr+ +k+Lkvyag+ehph aq+p
     KIR63028.1 110 PHNKLGRQLIKKLKVYAGAEHPHGAQQP 137
                    **************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1025.89
//
Query:       KIR63029.1  [L=154]
Description: 30S ribosomal protein S9 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-43  146.2   0.2    7.2e-43  146.0   0.2    1.0  1  Ribosomal_S9  Ribosomal protein S9/S16


Domain annotation for each model (and alignments):
>> Ribosomal_S9  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0   0.2     4e-47   7.2e-43       1     121 []      34     154 .]      34     154 .] 0.99

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 4e-47
                   EECTTEEEEEEEEESSSEEEETTEECCHHSTTSCHHHHHCHHHHHTTTSSSEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHCTCCCTS- CS
  Ribosomal_S9   1 GrrKesvArvwikegkgkilvngksleeYfkeeaarekvleplkltgllgkfdvfvkvkgGGlsgqaeAirlgiaraLvalekeekkeLkkaglltr 97 
                   GrrKe++ rv+i++g+gki+ ng++le Yf+++ +++ ++ pl ++++ ++fdv+++ +gGG++gqa+A+rl+iaraL+  e++ +++Lkkag+ltr
    KIR63029.1  34 GRRKEAIVRVRIVPGSGKITCNGRDLEAYFPSKVHQQLIKDPLVTAEKPEAFDVIANLRGGGTTGQAGALRLAIARALIVSEPDDRPALKKAGFLTR 130
                   9**********************************************************************************99************ PP

                   B--------TTSSCTTB----S-- CS
  Ribosomal_S9  98 DpRvvErkKtgkkkARkkyqwskR 121
                   D+Rv+E kK+g+kkARk++q+skR
    KIR63029.1 131 DARVKESKKYGLKKARKAPQYSKR 154
                   ***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1072.29
//
Query:       KIR63030.1  [L=451]
Description: phosphoglucosamine mutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.8e-42  141.9   1.0    1.4e-41  141.4   0.1    1.8  2  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
    2.8e-31  108.1   3.0      9e-31  106.4   1.0    2.5  3  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
    1.5e-19   70.6   1.0    4.1e-19   69.1   1.0    1.8  1  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
    2.5e-15   56.4   3.3    9.7e-15   54.5   3.3    2.1  1  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina
  ------ inclusion threshold ------
      0.033   14.5   2.0      0.052   13.9   0.1    2.2  2  AlaDh_PNT_N  Alanine dehydrogenase/PNT, N-terminal domain
      0.079   13.1   1.4       0.33   11.1   1.4    2.1  1  CinA_KH      Damage-inducible protein CinA KH domain


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.4   0.1   4.8e-45   1.4e-41       2     134 ..       3     136 ..       2     140 .. 0.96
   2 ?   -3.2   0.1         2   6.1e+03      18      35 ..     428     445 ..     421     448 .. 0.57

  Alignments for each domain:
  == domain 1  score: 141.4 bits;  conditional E-value: 4.8e-45
                 GGBBTTCEEEECCHCTBSCCHHHHHHHHHHHHCHHC..STS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEEEB-HHHHHHHHHHCCECEEEEE- CS
   PGM_PMM_I   2 qkfgtsGlRgkvgegeltpelveklgqaiaeylkae..akkkkvvvGrDtRvssrelaealaaglaanGvevillgllptPavsfairklkadagimit 98 
                 ++fgt+G+Rg+++++ ltpel+++++ a+a++l+++  ++ +  vvGrDtR+s+++l++a++agl+++G++v+++g+lptPav+f++ + kad g+m++
  KIR63030.1   3 RLFGTDGVRGRANAD-LTPELALAVAVAAAHTLAETdrSHPPLAVVGRDTRASGEMLEAAVVAGLTSAGANVVRVGVLPTPAVAFLTAEAKADLGVMLS 100
                 68***********77.9*******************98888899******************************************************* PP

                 -TTS-TTCCCEEEEETTTCE--CHHHHHHHHHHCCT CS
   PGM_PMM_I  99 aSHnppeyngiKvylsnGgpispeveekIeaiieke 134
                 aSHnp  +ngiK++ + G ++++e e++Iea++e++
  KIR63030.1 101 ASHNPMPDNGIKLFAAGGHKLPDEIETRIEAAVEAN 136
                 *******************************99986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2
                 BSCCHHHHHHHHHHHHCH CS
   PGM_PMM_I  18 ltpelveklgqaiaeylk 35 
                  t++ ++++++ iae ++
  KIR63030.1 428 ATEQAAREVAERIAEQVR 445
                 456666666666666555 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.6   7.9e+03       6      32 ..      27      55 ..      25      73 .. 0.56
   2 !  106.4   1.0     3e-34     9e-31       1     111 [.     260     369 ..     260     372 .. 0.95
   3 ?    2.1   0.0     0.069   2.1e+02      36      58 ..     367     389 ..     365     397 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.6
                 HHHHHHHHHCH.CSTTTC.EEEEETTS-T CS
  PGM_PMM_III  6 lallakyllee.klkpga.gvvktvmtsl 32
                 ++ +a+ l+e+ + +p   +v ++   s 
   KIR63030.1 27 AVAAAHTLAETdRSHPPLaVVGRDTRASG 55
                 45555555555644444425555555554 PP

  == domain 2  score: 106.4 bits;  conditional E-value: 3e-34
                  HHHHHHHHHHHHHHCH.CSTTTCEEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHTTECEEEETTCEEEETTTBSS--HHHHHHHHHHHHH CS
  PGM_PMM_III   1 dgdqllallakyllee.klkpgagvvktvmtslalervakklgiklvetkvGdkyvleemkeegavlGgEeSghiifldeattkDGilaallvleila 97 
                  dgdq++a+la +++e+  l +++ +v+tvm++l+l+ ++ ++gi+l+etkvGd+yvlee++ +g+ lGgE+Sghi+++ +att+DG+l+ l++++ +a
   KIR63030.1 260 DGDQVMAILAVAMREAgALTDDT-LVATVMSNLGLRLAMSAQGIRLIETKVGDRYVLEELRGSGLALGGEQSGHIVMPAYATTGDGVLTGLHLMARMA 356
                  79***********9998777776.************************************************************************** PP

                  HHTS-HHHHHHHHH CS
  PGM_PMM_III  98 etgkslselleell 111
                   tg++l++l+ +++
   KIR63030.1 357 ATGRTLADLA-AVV 369
                  *********9.554 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.069
                  HHHHHTT-EEEEESSSCHHHHHH CS
  PGM_PMM_III  36 rvakklgiklvetkvGdkyvlee 58 
                   v+ kl   l++++vGd+ v+++
   KIR63030.1 367 AVVTKLPQVLINVPVGDRSVGAA 389
                  688899999**********9987 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   1.0   1.4e-22   4.1e-19       2     103 .]     161     256 ..     160     256 .. 0.92

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 1.4e-22
                 HHHHHGGGTS-HHHHHHHT-EEEEE-TT-TTHHHHHHHHHHTT-EEEES-----TT-TTSS----TT-TTTTHHHHGGGGG-SEEEEE-TTS-BEEEEE CS
  PGM_PMM_II   2 aYiealkekvdseaikksglkvvidplhGaggeilkellkelgvdvvelnaepdpdfptkapnpeekealkllielvkkegadlglafDgDaDRlgvvd 100
                  Y+++l+ +v+    + +g+kvv+d+++Ga++e+++ + +e+g++vv ++aepd+   +   +   + ++++l e+v ++ga+lg+a+DgDaDR+++v+
  KIR63030.1 161 HYVQHLVGTVP---HRLDGIKVVVDCANGAAAEVAPVAYREAGAEVVAIHAEPDGLNIND--DCG-SNHIDALREAVVEHGAHLGIAHDGDADRCVAVT 253
                 6*********9...788999***********************************88763..333.47999***************************9 PP

                 TTE CS
  PGM_PMM_II 101 erG 103
                  +G
  KIR63030.1 254 ADG 256
                 887 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   3.3   3.3e-18   9.7e-15       1      74 []     376     445 ..     376     445 .. 0.93

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 3.3e-18
                 CCCCCHCC-TT..EECCCCCTTHHCCCCCCCCGCCEEEE.EEEETTCCEEEEEEEESSHHHHHHHHHHHHHHHH CS
  PGM_PMM_IV   1 linvrveekakvvaalaallkvasikeglkilledGrrlavRpSGTepllrvyvEaksdeelarlaeevaelle 74 
                 linv+v +   v+aa +a+ +      +++ l+e Gr+l +RpSGTepl+rv+vEa +++++ ++ae++ae+++
  KIR63030.1 376 LINVPVGDR-SVGAAAPAVRAE--VERAEAELGETGRVL-LRPSGTEPLVRVMVEAATEQAAREVAERIAEQVR 445
                 799999996.569999999888..9**************.******************************9875 PP

>> AlaDh_PNT_N  Alanine dehydrogenase/PNT, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.7e-05     0.052      26      56 ..     175     205 ..     167     213 .. 0.90
   2 ?   -1.7   0.2       1.1   3.2e+03      12     116 ..     409     436 ..     393     449 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
                  TT-EEEEETTTTGGGTC-HHHHHHTTEEEES CS
  AlaDh_PNT_N  26 aGhevlVesgaGegagfsdeeYeeaGaeive 56 
                   G++v+V++ +G++a +   +Y+eaGae+v+
   KIR63030.1 175 DGIKVVVDCANGAAAEVAPVAYREAGAEVVA 205
                  599**************************97 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.1
                  --SS-HHHHHHHHHTT-EEEEETTTTGGGTC-HHHHHHTTEEEESCHHHHCTTSSEEEESS--.CHCGGGS-TTCEEEEE--GGCHHHHHHHHHHCTE CS
  AlaDh_PNT_N  12 RvaltPatvkkLvkaGhevlVesgaGegagfsdeeYeeaGaeivesaeevlaeadlilkVkepseeelellkegqtlisflhlaanpellealaekgv 109
                  Rv l P++ + L                                                                             ++ + e+ +
   KIR63030.1 409 RVLLRPSGTEPL-----------------------------------------------------------------------------VRVMVEAAT 429
                  444444444444.............................................................................444444444 PP

                  EEEEGGG CS
  AlaDh_PNT_N 110 taialEl 116
                  +  a E+
   KIR63030.1 430 EQAAREV 436
                  4444444 PP

>> CinA_KH  Damage-inducible protein CinA KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.4   0.00011      0.33      33      65 ..     414     446 ..     393     448 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
                 EETTEEEEEEE...EEHHHHHHHHH....HHHH CS
     CinA_KH  33 akegevtvRltakaaneeeaealiapveeeire 65 
                 ++  e  vR+ ++aa+e++a+++++++ e++r+
  KIR63030.1 414 PSGTEPLVRVMVEAATEQAAREVAERIAEQVRA 446
                 6667888************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3263.70
//
Query:       KIR63031.1  [L=943]
Description: hypothetical protein TK50_19185 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-05   25.3  19.4      4e-05   24.0   4.2    5.1  5  FtsX      FtsX-like permease family
  ------ inclusion threshold ------
        8.3    6.7  15.3       0.42   11.0   3.4    3.3  4  MacB_PCD  MacB-like periplasmic core domain


Domain annotation for each model (and alignments):
>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.5         2   1.8e+04      34      76 ..      20      27 ..      17      43 .. 0.43
   2 ?   -1.1   0.4       0.3   2.7e+03      27      45 ..     638     656 ..     619     660 .. 0.61
   3 !   16.2   7.3   1.3e-06     0.011       1      96 []     662     744 ..     662     744 .. 0.92
   4 ?    1.7   2.1     0.041   3.7e+02      31      84 ..     784     840 ..     779     850 .. 0.76
   5 !   24.0   4.2   4.4e-09     4e-05       3      91 ..     853     939 ..     851     943 .] 0.83

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2
        FtsX 34 viGlglgllaaqllsdvllssvfsselkisidlitvliiivll 76
                ++G++++                                    
  KIR63031.1 20 LVGVLVA-----------------------------------T 27
                3333322...................................2 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.3
        FtsX  27 litlvalviGlglgllaaq 45 
                 l++lv  v +l lg+++a 
  KIR63031.1 638 LFVLVLVVCALFLGNAVAA 656
                 3334444444444444444 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 1.3e-06
        FtsX   1 kreigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiskilkkep 96 
                 ++e+++l +lG+  +++  l+l+e+++++lva +++lgl++ +  +             l i + +   l+++ ++lllal+agl++++++++ +p
  KIR63031.1 662 RSELAVLACLGWPARRIGALILGEVAALGLVAGLLSLGLAFPLGAA-------------LGIDVGWRRALLAVPVALLLALVAGLVPALRAARAHP 744
                 689*********************************9999999776.............8999999999999999999999999999999988765 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.041
        FtsX  31 valviGlglgllaaqllsdvllssvfs...selkisidlitvliiivlllllallag 84 
                  al+iG+++++l++ + +++ +++v+s   + +++s+ + + l++++ +ll a +++
  KIR63031.1 784 GALAIGVAALTLVTAAGYAFRGAIVGSllgDTVSVSVRGADTLAAVATVLLGAAAVA 840
                 577788777777777777777777776666999999999999999999999988875 PP

  == domain 5  score: 24.0 bits;  conditional E-value: 4.4e-09
        FtsX   3 eigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiski 91 
                 e+++lra+G++++ +++l+ +e++l++++++++G +lgl  a  l  +l   +    ++ ++ +  vl++ + +l+ a l   l++ ++
  KIR63031.1 853 ELATLRAVGWTDAALARLIGYEGFLLGVLGALAGAALGLGGAAWLVGGLPGAL--VLVAATVAGAGVLVTCAAALVPAALLRRLPTARL 939
                 89********************************9999987777666665554..5788888888888888888888888777776666 PP

>> MacB_PCD  MacB-like periplasmic core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.7     0.013   1.2e+02       5      74 ..      20     118 ..      16     161 .. 0.48
   2 ?   -2.4   0.0      0.56   5.1e+03      63     114 ..     270     333 ..     234     343 .. 0.52
   3 ?   -3.4   0.0       1.1     1e+04      54      80 ..     407     428 ..     391     457 .. 0.58
   4 ?   11.0   3.4   4.6e-05      0.42       7     100 ..     785     873 ..     779     890 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.013
    MacB_PCD   5 vLGiaiGvaaviaivslgeglqasvlsqisdl.gnlvtvtpgk.gsges...................lsdpdvealrrevp.veavapvv........ 73 
                 ++G+ ++++ ++++++ +++++ +v+ +++++ ++ + + + + g +++                   ++ +++e+++ +v  v+ +ap+         
  KIR63031.1  20 LVGVLVATTGFVVLTGATTTSRLAVTGTVEQStAAAYDILVRPkGARTPleaerrlvqpnylsglfggITTAQYERVK-AVAgVDVAAPIAmlgwstar 117
                 667777777777788888888888888888775334444444333333322333333333333333334444444332.23335555555444444333 PP

    MacB_PCD  74 t 74 
                 +
  KIR63031.1 118 V 118
                 0 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.56
    MacB_PCD  63 evp..veavapvv..........tvrgggsg...eeevtvvgvdpdyfkvfglkl.aeGrffteadlr 114
                  vp   +av p+           +v g++ +   +  ++v+ +  +  +++++++ a  r+f +a+lr
  KIR63031.1 270 TVPllLAAVDPTAedrlvglggaVVDGRSLRpddT--ASVRSA--GSSELLNVPVlATNRPFVDAELR 333
                 45555556666654444333332112221112222..333331..23335556554667777777776 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.1
    MacB_PCD  54 dpdvealrrevp.veavapvvtvrgggs 80 
                  pd  +l  +v+ v+a+ p+v   +g++
  KIR63031.1 407 LPDG-TL--RVGaVAAADPQV---YGDQ 428
                 3333.33..256688888886...4432 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 4.6e-05
    MacB_PCD   7 GiaiGvaaviaivslgeglqasvlsqisdlgnlvtvtpgkgsgeslsdpdvealrrevpveavapvv...tvrgggsg....eeevtvvg.vdpdyfkv 97 
                 ++aiGvaa++++++ g +++ ++  ++   g++v v++    ++  + + v ++   ++ +ava v+   + r +       +   ++vg +d++++++
  KIR63031.1 785 ALAIGVAALTLVTAAGYAFRGAIVGSLL--GDTVSVSVRG--AD--TLAAVATV--LLGAAAVADVLylnI-RDR--AaelaT--LRAVGwTDAALARL 870
                 89***********************998..9988888864..22..33223211..123444444443321.111..111112..44455566555555 PP

    MacB_PCD  98 fgl 100
                  g+
  KIR63031.1 871 IGY 873
                 554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (943 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.41
# Mc/sec: 6869.02
//
Query:       KIR63032.1  [L=396]
Description: aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-62  209.5   0.0    8.9e-62  209.3   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    6.6e-07   28.2   0.0      1e-06   27.6   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    1.4e-06   27.5   0.0      2e-06   27.0   0.0    1.1  1  Aminotran_5      Aminotransferase class-V
    1.5e-06   27.7   0.0    2.3e-06   27.1   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
        0.2   11.5   0.2        2.5    8.0   0.0    2.5  2  ScsC_N           Copper resistance protein ScsC N-terminal do
       0.26   10.0   0.0       0.34    9.6   0.0    1.1  1  OKR_DC_1         Orn/Lys/Arg decarboxylase, major domain


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.3   0.0     3e-65   8.9e-62       4     363 .]      36     392 ..      33     392 .. 0.93

  Alignments for each domain:
  == domain 1  score: 209.3 bits;  conditional E-value: 3e-65
                    EESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEE CS
  Aminotran_1_2   4 inLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvp 99 
                    +nLg++ +++d     +pe + a++e  +  g+ n+y+p  g p+l+ a+a   +r  +l+++++++vv + Ga+++i+a i +l ++pgde++ +
     KIR63032.1  36 VNLGQGFPDTD----GPPEMLAAAAE--ALRGGQNQYPPGPGIPALRAAVAAHQRRFWGLEYDPDGEVVITAGATEAIAASILAL-CEPGDEVVCF 124
                    8**********....99999999998..888999*****************76666667**************************.8********* PP

                    ESS-THHHHHHHHTTSEEEEEEBEET..TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTC CS
  Aminotran_1_2 100 dptyasyknilrlsggevvryplyse..edfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagf 193
                    +p+y+sy   + l+g+  +++ l++e    +  d  al +a         +t+++l++sphNPtG+v+t+eel  +++l+++++++ + De+Y+++
     KIR63032.1 125 EPYYDSYAASIALAGAVRRPVTLRPEadGRYAFDPAALRAAFGP------RTRLVLLNSPHNPTGKVFTREELALVAELCREHGAYAVTDEVYEHL 214
                    **************************555567788899999999......********************************************** PP

                    BSSSSHTHHH....HGGSTTSTT.EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 194 vfgsldavat....ranveeepn.llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlq 282
                    vf +    at    +a++    + +l  +s +K f+++G+ vG+++g a +vs++ ++++++++   ++lq+ava al  ++    ++ e ++ +q
     KIR63032.1 215 VFADA---ATphvpLATLPGMRErTLRISSAGKTFSCTGWKVGWVSGPAPLVSAALRVKQFLTYvnGAPLQPAVAVALALPDA---YFAEFAAGMQ 304
                    ***65...223345444444444799************************************999*****************7...8********* PP

                    HHHHHHHHHHHHSTEEEECCSCSSEEEEEETHH...CHHHHHHHHHHTCTEEEEEGGGGTS.....TTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 283 krrkelrdeLaelglkvlasqsgmflltdlsae...takelskkLleevgvyvtpgtsftv.....pgrlRitvAglteeeleelveal 363
                    +rr++l+++L+++g+ vl++++++f+  d+ ++   +  e++++L  ++gv+ +p + f+      +  +R+ + +  +e l e+v++l
     KIR63032.1 305 ARRDQLVAGLTDAGFGVLTPEGTYFVTADIGPLggrDGVEFCRSLPARCGVVAVPTQVFYDdaeagRRLVRFAF-CKRPEVLAEAVTRL 392
                    *******************************************************98888899999999*****.99999999999986 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   3.3e-10     1e-06      71     176 ..      98     211 ..      86     219 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 3.3e-10
                      EEESSHHHHHHHHHHTTS-TTEEEEEESTSSHHHHHHH...HHTHHHTTCEEEEEST...TSHHHHHHHCCTTEEEEEEESS-TTTT---...- CS
  Cys_Met_Meta_PP  71 lavssGmaAiaaailallkaGdeivvsddlYggtqrll...kkvlkklgievkfvdt...sdleelekaikentklvylEtptnpllkvv...D 155
                      ++++  + Aiaa+ilal++ Gde+v+ +  Y++  + +     v + + ++ +        d+++l++a+ ++t+lv+l +p np+ kv     
       KIR63032.1  98 VITAGATEAIAASILALCEPGDEVVCFEPYYDSYAASIalaGAVRRPVTLRPEAD-GryaFDPAALRAAFGPRTRLVLLNSPHNPTGKVFtreE 190
                      455556679******************9988865444300034444444443332.2233799************************9974447 PP

                      HHHHHHHHHHTT-EEEEEGTT CS
  Cys_Met_Meta_PP 156 iekiaklakkagvlvvvDntf 176
                      ++ +a+l++++g+  v D ++
       KIR63032.1 191 LALVAELCREHGAYAVTDEVY 211
                      8899*********99999876 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   6.7e-10     2e-06      61     177 ..      94     210 ..      79     214 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 6.7e-10
                  GGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHH.HHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB-. CS
  Aminotran_5  61 eeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelak.rtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiq. 156
                  + e++ t G+teai++ +l+l    +pgde+v  e  + +    ++ +   r+ +++   ++d +   d+ +l+++  ++t+lv ++   n tG ++ 
   KIR63032.1  94 DGEVVITAGATEAIAASILAL---CEPGDEVVCFEPYYDSYAASIALAGAvRRPVTL-RPEADGRYAFDPAALRAAFGPRTRLVLLNSPHNPTGKVFt 187
                  579******************...9********986666555444444320334444.456666666679999*********************8761 PP

                  ..-HHHHHHHHHHTT-EEEEE-T CS
  Aminotran_5 157 ..pveeigklakkkgalvlvDaa 177
                    +++ +++l++++ga+ ++D +
   KIR63032.1 188 reELALVAELCREHGAYAVTDEV 210
                  115666789***********976 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   7.8e-10   2.3e-06       6     167 ..      45     208 ..      43     210 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 7.8e-10
                      GG----HHHHHHHHCS----C.CCT--HHHHHHHHHHHH........HTT-SEEEEES-HHHHHHHHH..HHH--TTEEEEEETT-HHHHSSTT CS
  Beta_elim_lyase   6 svtkgteamsdaqaaamlGde.sYgedktvnrLedavae........lfgkeaalfvpqGtaAnsill..killqrgeevivtepahihfdetg 88 
                      +   g ++m +a a+a  G + +Y   +++ +L +ava+         ++ ++ + ++ G a ++i+    +l+++g+ev++ ep   + d   
       KIR63032.1  45 T--DGPPEMLAAAAEALRGGQnQYPPGPGIPALRAAVAAhqrrfwglEYDPDGEVVITAG-ATEAIAAsiLALCEPGDEVVCFEP---YYDSYA 132
                      4..7889******7777655438**************99888877544444455555554.5566655227788*********99...778888 PP

                      HHHHCC--E..EEEE-EBTT..TBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase  89 aiaelagvk..lrdlknkea..GkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                      a  +lag+   +++l+ +++    +d+++l+aa  +      +++l++l   +n   G+v + eel+ va++++++g   + D
       KIR63032.1 133 ASIALAGAVrrPVTLRPEADgrYAFDPAALRAAFGP------RTRLVLLNSPHNP-TGKVFTREELALVAELCREHGAYAVTD 208
                      888887776115555566663335777777777665......799*********5.9********************877766 PP

>> ScsC_N  Copper resistance protein ScsC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.22   6.7e+02      17      31 ..      49      63 ..      49      65 .. 0.86
   2 ?    8.0   0.0   0.00083       2.5      17      28 ..     382     393 ..     381     395 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.22
      ScsC_N 17 PEiLvEAlqaLqkkq 31
                PE L+ A +aL+  q
  KIR63032.1 49 PEMLAAAAEALRGGQ 63
                999********9766 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00083
      ScsC_N  17 PEiLvEAlqaLq 28 
                 PE+L+EA++ L+
  KIR63032.1 382 PEVLAEAVTRLR 393
                 *********998 PP

>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00011      0.34      82     142 ..      94     157 ..      80     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00011
                 SEEEEESSHHHHHHHHHHHHH--TTEEEEEESS--HHHHHHHHHS-EE..EEEE--E.B-TTS- CS
    OKR_DC_1  82 dksyfvvnGTsssnkvvlnavltpgdlvlvdRNcHKSiehalvlsgat..Pvylepe.rnalgi 142
                 d   +++ G + ++ + + a+++pgd v+       S +  + l+ga+  Pv l+pe + ++ +
  KIR63032.1  94 DGEVVITAGATEAIAASILALCEPGDEVVCFEPYYDSYAASIALAGAVrrPVTLRPEaDGRYAF 157
                 56667899**************************************9555******97877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3041.40
//
Query:       KIR63033.1  [L=637]
Description: glutamine amidotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-61  205.9   0.0    5.2e-35  120.2   0.0    2.3  2  SIS         SIS domain
    6.4e-21   74.9   0.1    1.5e-20   73.8   0.1    1.6  1  GATase_6    Glutamine amidotransferase domain
    3.2e-13   49.7   0.0    6.5e-13   48.7   0.0    1.6  1  GATase_7    Glutamine amidotransferase domain
  ------ inclusion threshold ------
      0.015   15.3   0.1      0.094   12.7   0.0    2.3  2  SIS_2       SIS domain
      0.025   13.5   0.0      0.064   12.1   0.0    1.6  2  GATase_4    Glutamine amidotransferases class-II
      0.051   13.6   0.0       0.12   12.4   0.0    1.6  1  bact-PGI_C  Bacterial phospho-glucose isomerase C-terminal SI


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.2   0.0   1.7e-38   5.2e-35       2     127 ..     314     438 ..     313     441 .. 0.98
   2 !   83.5   0.0   3.7e-27   1.1e-23       2     129 ..     486     618 ..     485     620 .. 0.93

  Alignments for each domain:
  == domain 1  score: 120.2 bits;  conditional E-value: 1.7e-38
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSE CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadl 100
                 L++ ++i+++++Gt y++++ +++++e+++ i++eve+ase++++  +++d+ +l+i+is+sget d+++a+++ake++a+++aI++ +gs++ re+d 
  KIR63033.1 314 LRDVDKIFIVACGTAYHSGLVAKYAIEHWTRIPCEVELASEFRYR-DPVLDRSTLIIVISQSGETMDTLMALRHAKEQKARVLAICNTNGSTIPRESDA 411
                 89999****************************************.***************************************************** PP

                 EEEEEEECHCSSSHCHHHHHHHHHHHH CS
         SIS 101 alyinaepetlvastksltaqlaalda 127
                 +ly++ +pe+ vastk++++ql+a+++
  KIR63033.1 412 VLYTHGGPEIAVASTKAFLTQLVACYL 438
                 ************************987 PP

  == domain 2  score: 83.5 bits;  conditional E-value: 3.7e-27
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEE....SSSHHHHHHHHHH.HHHHTTSEEEEEESSTTSHHH CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilis....fsgetkdlvaaae.lakergakiiaITdskgspla 95 
                 ++++ +++++G+   y++a+e+alkl+e++++++e+ +a+elkhg++alid++++vi i      +g  +d+v ++  ++++rga++i+I+ + + +++
  KIR63033.1 486 IRSEPTVLFIGRHVGYPVALEGALKLKELAYMHAEGFAAGELKHGPIALIDQGTPVICIVpspvGRGMLHDKVVSNIqEVRARGARTIVIAEEGDEAVV 584
                 78899*******************************************************555556778888888888********************* PP

                 HHSSEEEEEEEECHCSSSHCHHHHHHHHHHHHHH CS
         SIS  96 readlalyinaepetlvastksltaqlaaldala 129
                 r+ad+ ++++  p  l++++ ++++q +a + +a
  KIR63033.1 585 RYADHLIRVPRTPTLLAPLVTTVPLQVLAAEIAA 618
                 ***************************9998876 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.1   4.9e-24   1.5e-20      11     133 ..      78     216 ..      68     217 .. 0.84

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 4.9e-24
    GATase_6  11 edevalaHvRlaivglaeeegaqPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevllall.......eelG...........eevl.e 90 
                 +++++++H+R+a++g +++  a+P   +dgr++++hNG i+n+ +lr+el++ +g++f s++Dte  ++ll       + +G            +v+ +
  KIR63033.1  78 DGTTGIGHTRWATHGGPTDRNAHPHLAPDGRVAVIHNGIIENFAKLRAELED-DGVQFSSDTDTECAAHLLsaaladlRAAGepdgpqllaaaMRVVcQ 175
                 6789*************77666******************************.****************999999999444455556666688777789 PP

    GATase_6  91 rlrGmfafaiwdk.rentlilardrlgvkplyyavdesglafas 133
                 rl+G+f+  ++d+  ++ ++ ar    ++pl+++  ++  + as
  KIR63033.1 176 RLEGAFTLLAVDAaVPGAVVGARR---NSPLVVGRGDGENYLAS 216
                 *************77777777733...58999988877776666 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   2.2e-16   6.5e-13       9     121 ..      95     221 ..      85     223 .. 0.89

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 2.2e-16
    GATase_7   9 seagaQPmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllallea..................ewgeealerlnGmfAfaiwdeeek. 88 
                 ++++a P + + dgr+++++nG i N+ +lr+eLe+ g++f++++Dte  ++ll+a                  + ++ +++rl+G f ++ +d++   
  KIR63033.1  95 TDRNAHPHL-APDGRVAVIHNGIIENFAKLRAELEDDGVQFSSDTDTECAAHLLSAaladlraagepdgpqllaAAMRVVCQRLEGAFTLLAVDAAVPg 192
                 567788888.69*******************************************9*****************999999***************87763 PP

    GATase_7  89 rlllaRDrlGikPLyygedkgdallfaSelkal 121
                  ++ aR      PL +g+ +g + ++aS + a+
  KIR63033.1 193 AVVGARR---NSPLVVGRGDG-ENYLASDVAAF 221
                 6777776...69*******86.89999998876 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.1e-05     0.094     102     137 ..     363     398 ..     322     399 .. 0.87
   2 ?   -0.8   0.1      0.48   1.4e+03     118     136 ..     557     575 ..     544     576 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.1e-05
                 -TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE CS
       SIS_2 102 kpgDvLlviSnsGnnavvveaaeaakergmkviAlt 137
                 + + +++viS+sG+    + a+++ake+ ++v A++
  KIR63033.1 363 DRSTLIIVISQSGETMDTLMALRHAKEQKARVLAIC 398
                 45567899**************************97 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.48
                 HHHHHHHHHHHHT-EEEEE CS
       SIS_2 118 vvveaaeaakergmkviAl 136
                  vv  ++++++rg+++i++
  KIR63033.1 557 KVVSNIQEVRARGARTIVI 575
                 58999***********998 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.1e-05     0.064      75     175 ..      83     184 ..      78     198 .. 0.72
   2 ?   -3.1   0.0      0.97   2.9e+03     155     196 ..     554     596 ..     550     598 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.1e-05
    GATase_4  75 vaHiRkatqGevklenthpFvRelwgrewifAHnGdlkeykpkl....egrfePvGsTDsElafCelleelasrfekaepsaeeler.alaelakeiae 168
                 + H R at+G  +++n+hp      gr     HnG ++++++ +    ++  +   +TD+E a   l  +la   ++ ep+  +l + a++ + +++  
  KIR63033.1  83 IGHTRWATHGGPTDRNAHPHLAP-DGRV-AVIHNGIIENFAKLRaeleDDGVQFSSDTDTECAAHLLSAALADLRAAGEPDGPQLLAaAMRVVCQRL-- 177
                 88*****************9876.4454.446*****99887765556566777789****997777667776665556666665552555555555.. PP

    GATase_4 169 lGvfnll 175
                 +G f+ll
  KIR63033.1 178 EGAFTLL 184
                 3666665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.97
    GATase_4 155 leralaelakeiaelGvfnlllsd.gralfahastrLvyilRk 196
                 l++ +   ++e+ ++G  ++++++ g++ +++  ++L+ + R+
  KIR63033.1 554 LHDKVVSNIQEVRARGARTIVIAEeGDEAVVRYADHLIRVPRT 596
                 5566677788999999999998853788888888888877665 PP

>> bact-PGI_C  Bacterial phospho-glucose isomerase C-terminal SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     4e-05      0.12       4     123 ..     478     592 ..     475     611 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4e-05
                 HHHHHHHHHTT.SEEEEE-..TT-THHHHHHHHHHHHTT----B---.SSHHHHHHHTTSS-GGGGTTEEEEEESSHH........HHHHHHHHTTTSS CS
  bact-PGI_C   4 pakqlAlelag.klpviygssellevaArRfknqlnenAKipafagvlpeanhneivgleaeeelkkrlrlvllrdeeehprvkkraeivkelaeergv 101
                 p ++lA+e+    +++++g  ++ +++A   + +l+e A ++a   +  e++h  i+++    ++++++ +++           k+++ ++e+ + rg+
  KIR63033.1 478 PVRELAREIRSePTVLFIG-RHVGYPVALEGALKLKELAYMHAEGFAAGELKHGPIALI----DQGTPVICIVPSPVGRGMLHDKVVSNIQEVRA-RGA 570
                 67899****9977888888.***************************************....78999999998877778899999999998766.99* PP

                 EEEEE---SSSHHHHHHHHHHH CS
  bact-PGI_C 102 rvtevkaegesplerlaslill 123
                 r++ +  eg++++ r+a + ++
  KIR63033.1 571 RTIVIAEEGDEAVVRYADHLIR 592
                 **************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 4772.76
//
Query:       KIR63034.1  [L=98]
Description: hypothetical protein TK50_19210 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00013   22.4   1.4    0.00038   20.9   1.4    1.7  1  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d


Domain annotation for each model (and alignments):
>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   1.4   2.1e-08   0.00038       3      98 ..       4      93 ..       1      95 [. 0.84

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.1e-08
  T7SS_ESX_EspC  3 dnLsVdpdhlrelaakhdevaaeiasavaaaagasaavldshGpicaatndavaaaeaarraagealaaasteLadkLraAAaaYeatDeeaagal 98
                   ++ +V p+ lre+a  +++ a ++   ++ +   +   ++  G   + ++ a+a +e a +a + al a  +     L++AA+ Y+a+De+aa +l
     KIR63034.1  4 EPFTVRPELLREVAGALGDLAFQLGHGLSGV---PGLAVPAPG---WRSAGALAGLESAAHAWCGALGARVAAAQGALTVAAEGYQAADERAAHRL 93
                   6789************************999...666777755...5666778888888888888888888888899****************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 753.28
//
Query:       KIR63035.1  [L=496]
Description: carbohydrate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-51  175.1   4.1      3e-51  174.3   4.1    1.4  1  Carb_kinase   Carbohydrate kinase
    7.7e-32  110.5   3.4    7.7e-32  110.5   3.4    1.9  3  YjeF_N        YjeF-related protein N-terminus
    0.00034   20.1   0.0    0.00054   19.4   0.0    1.2  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
     0.0088   15.4   0.7      0.014   14.8   0.7    1.2  1  PfkB          pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.3   4.1   6.7e-55     3e-51       2     229 ..     252     470 ..     251     482 .. 0.94

  Alignments for each domain:
  == domain 1  score: 174.3 bits;  conditional E-value: 6.7e-55
                  EEEE-BTTCHHHHHHHHHHHHCTT-SEEEEEESSTTTCCCCTTTTTCEECCTTHTTTS...--SSS-SEEEE-TT-SSSHCHHHHCHHHCCCCS-EEE CS
  Carb_kinase   2 lvigGsedytGAallaalaalrlgaglvsvateseaiavlksylpevivhplledeqakileklerldavviGpGLgrdekikklleevlekdeplvi 99 
                  ++  Gs  y+GAa+l+  +al+   glv++a    a a +  + p vi++ +         +++ r++a+v G+GLg+ e++++ l+ vl++ +p+v+
   KIR63035.1 252 GLATGSAAYPGAAVLSVGGALAGPTGLVRYAG--SARADVLLQHPSVIASGRV--------ADAGRVQAWVCGSGLGTGEEAAAELRAVLAAPVPVVL 339
                  6778****************************..7888888899*****9999........6889********************************* PP

                  EGGGGGSGGGG......TTTTSSEEEE--HHHHHHHCTTTCHHCCSHHHHHHHHHHHHTTEEEEESTTSEEEECTTEEEEE----GGG-STTHHHHHH CS
  Carb_kinase 100 DAdgLnllaqkne...lserkaeviLTPhkkEfkrLlkaivkkeddrlelarelaqklnavvllkgekdvivspegevlinstgssalakGGsGDvLa 194
                  DAd+L+ll + +    l +r a+++ TPh +Ef+rL++     + dr+ +a +la+ +navvllkg  +++++p+g  + n+tg++ala+GG+GDvLa
   KIR63035.1 340 DADALTLLVDGSMadrLRQRDAPIVVTPHDREFARLCGEEP--GADRAAAALRLAAWMNAVVLLKGDRTIVATPDGRAYVNPTGTPALATGGTGDVLA 435
                  *******99987788999***********************..******************************************************* PP

                  HHHHHHHHCTSSHHHHHHHHHHHHHHHHHHHCCCT CS
  Carb_kinase 195 GligalLaqneasyeaaiaaawlhgaasdeaaekk 229
                  Gl+g+lLa   a+  aa+aaa+lhg a++eaa   
   KIR63035.1 436 GLLGSLLAAGLAPERAAAAAAYLHGLAGREAARSG 470
                  ******************************98764 PP

>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   3.4   1.7e-35   7.7e-32       3     171 .]      25     194 ..      23     194 .. 0.89
   2 ?   -2.7   0.0         1   4.7e+03      41      43 ..     322     324 ..     278     373 .. 0.63
   3 ?   -2.2   0.0      0.72   3.2e+03      24      38 ..     367     381 ..     320     407 .. 0.56

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 1.7e-35
      YjeF_N   3 eLmenagravae.vlrallg.nspaekkvlvlvGsgnnGgdglaaArhLaqegakVtvllleeeekldedaeralellkkaggkvveekpeedleekls 99 
                  Lm +a++++a+ ++  l++ + + +++vl+lvG g+nGgd+l+a++ La++ga V vlll++     + +++ l++l++agg++v   p+        
  KIR63035.1  25 TLMHRAAAGLARrCALLLADrGGVYGARVLLLVGTGDNGGDALYAGQRLARRGAGVSVLLLTP----GRAHAAGLAALRAAGGRLVDRPPAV------- 112
                 69**********55555555899***********************************99988....579****************544443....... PP

      YjeF_N 100 apvdlviDAllGiglrgelreelaeliewlnss......eapvlavDiPSGldadtGavs......gtavkadvtvtfgapkrg 171
                   vdlv+D+++Gig  g lre++ +l  +l         +a v+avD+PSG+ +dtG+v+      +ta++advtv+fga+k++
  KIR63035.1 113 --VDLVVDGIVGIGGTGGLREAADRLSGELPGLrgrdggRAAVVAVDVPSGVAVDTGHVPpaasgrPTAIRADVTVAFGALKPA 194
                 ..9******************9999999998889999*9999******************555555555*************85 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1
      YjeF_N  41 dgl 43 
                  + 
  KIR63035.1 322 EAA 324
                 222 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.72
      YjeF_N  24 paekkvlvlvGsgnn 38 
                 p+++++  l+G+   
  KIR63035.1 367 PHDREFARLCGEEPG 381
                 344444444554432 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.2e-07   0.00054     102     228 ..     346     458 ..     321     473 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.2e-07
                   SBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S--BT CS
  Phos_pyr_kin 102 elleeeavealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveeleaerietknthG 198
                    l++ +  + l+++ +p   v+tP   E ++L+ge+    +d  +aa +l++     Vl+kG ++         ++ + ++   ++   ++   t G
    KIR63035.1 346 LLVDGSMADRLRQRDAP--IVVTPHDREFARLCGEEP--GADRAAAALRLAAWMNAVVLLKGDRT---------IVATPDGRAYVNPTGTPALATGG 429
                   45566666666664444..69*************554..46788899999**99********983.........34444455555556666699*** PP

                   HHHHHHHHHHHHHHCTSSHHHHHHHHHHHH CS
  Phos_pyr_kin 199 tGCtlssaiaaelakgesleeAvkkAkeyv 228
                   tG++l+  + + la g  +e A + A +y+
    KIR63035.1 430 TGDVLAGLLGSLLAAGLAPERAAAAA-AYL 458
                   *********************98765.555 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.7     3e-06     0.014     173     284 ..     352     457 ..     318     465 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3e-06
                 HHHHHHHHHCTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHT CS
        PfkB 173 fkeallellaladllkpneeElealtgekledieealaalhklkakgaktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaalle 271
                 ++++l++    + +++p ++E+++l+ge+    ++ +aa+  l a    + vv l  + ++v++ dg  +v++   + +  t G+GD  +g + + l++
  KIR63035.1 352 MADRLRQ-RDAPIVVTPHDREFARLCGEE--PGADRAAAALRLAA-W-MNAVVLLKGDRTIVATPDGRAYVNP-TGTPALATGGTGDVLAGLLGSLLAA 444
                 4555555.567889***************..55555555555332.2.4555555566688888*********.88*********************** PP

                 THHHHHHHHHHHH CS
        PfkB 272 gksleealrfana 284
                 g   e+a+++a +
  KIR63035.1 445 GLAPERAAAAAAY 457
                 *******999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.50
# Mc/sec: 2962.79
//
Query:       KIR63036.1  [L=372]
Description: alanine racemase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-63  213.4   0.3    3.8e-63  213.1   0.3    1.1  1  Ala_racemase_N  Alanine racemase, N-terminal domain
    1.6e-42  144.2   0.1      3e-42  143.3   0.1    1.4  1  Ala_racemase_C  Alanine racemase, C-terminal domain


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.1   0.3   4.2e-67   3.8e-63       1     219 []       8     229 ..       8     229 .. 0.96

  Alignments for each domain:
  == domain 1  score: 213.1 bits;  conditional E-value: 4.2e-67
                     EEHHHHHHHHHHHHHHSCTTSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTSCSEEEEESCSTGGGHHHHHHTTEEEEES CS
  Ala_racemase_N   1 idldalrhNlrrlralagpgaklmavvKanayghgavevaralaeggadgfgvatleEalelreagitapilvlegfspeelaalaeydltvtvd 95 
                     +dlda+r+N+ rlra +   a+lmavvKa++yghg+v+ ara++++gad++gv+tl+Eal+lr+ag++ap+l +   +   l + ++++++++  
      KIR63036.1   8 VDLDAIRENVTRLRAGT--SAELMAVVKADGYGHGMVPSARAALDAGADWLGVCTLDEALTLRRAGLDAPVLAWLLAPGLPLHEGVAAGVDLAAA 100
                     79************999..477************************************************************************* PP

                     SHHHHHHHHHHHHHTTS-EEEEEEBESSSSSSSBSCHHHHHHHHHHHHTTT...EEEEEEE-S-SSTTSTS.HHHHHHHHHHHHHHHHHHHTTGG CS
  Ala_racemase_N  96 sleqlealaaaareagkplrvhlkidtgmgRlGftpeeleellealaalpg...lrleglmtHfasadepd.eeteaqlarfeealeelekaglr 186
                     sl ql+++ +a r a++p+r hlkidtg+ R+G t +++++llea+a+++    ++++g+++Hf  ad p  ++t++qla+f+e l+ +e+aglr
      KIR63036.1 101 SLTQLDEMVEAGRLADRPARLHLKIDTGLARGGATVADWPALLEAAAKAQAdglVEVVGVWSHFVYADLPGhPTTDRQLAVFHEGLAMVERAGLR 195
                     ******************************************999988654569**************999888888*************9**** PP

                     GSEEEEESHHHHHHSG.GGTTEEEESGGGGT-SS CS
  Ala_racemase_N 187 ppvvslanSaaillaa.ahfdmvRpGialyGlsp 219
                     p++++lanSaa+l ++ +hfd+vRpGia yGlsp
      KIR63036.1 196 PRYRHLANSAATLTRPdTHFDLVRPGIATYGLSP 229
                     ***************779**************98 PP

>> Ala_racemase_C  Alanine racemase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.3   0.1   3.3e-46     3e-42       1     124 []     240     367 ..     240     367 .. 0.95

  Alignments for each domain:
  == domain 1  score: 143.3 bits;  conditional E-value: 3.3e-46
                     SEEEEEEEEEEEEESTTSEESGGGSEE-SSSEEEEEES--GGGTCGGGGT..TEEEETTEEEEEESEE-SSEEEEEECTSTT--TT-EEEEEEET CS
  Ala_racemase_C   1 vmtlkarviqvkevkagegvgYgatyvaerdtriavvpiGYaDGlprals..gevlingkrvpvvGrvcMDqlmvdlteveevkvgdevvllgeg 93 
                     +mt +arv+ +k+v+ag+gv+Yg+ty ++ d ++avvp+GYaDG+pr++s  g+v ++g+r  v GrvcMDq++vd+++ + v++gd+++l+g+g
      KIR63036.1 240 AMTARARVMLTKRVPAGSGVSYGHTYLTDADANLAVVPLGYADGVPRHASntGPVQLAGRRRTVSGRVCMDQFVVDCGD-DPVAAGDVATLFGPG 333
                     79**********************************************99666************************98.55***********87 PP

                     ..EEEEHHHHHHHHTSEHHHHHHTSHT.TSEEEE CS
  Ala_racemase_C  94 ..eeitveelaeaagtisyeiltrlsk.rvprvy 124
                        e+t++++aea+gti+yei+tr++  rvprvy
      KIR63036.1 334 adGEPTADDWAEAVGTINYEIVTRFGGvRVPRVY 367
                     79***********************655****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2699.87
//
Query:       KIR63037.1  [L=365]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-26   93.2   4.6    3.6e-26   93.2   4.6    1.7  2  Abhydrolase_6  Alpha/beta hydrolase family
      3e-25   89.3   0.0    4.4e-25   88.8   0.0    1.2  1  Abhydrolase_1  alpha/beta hydrolase fold
    2.8e-20   72.6   1.2    1.9e-19   69.9   1.2    2.0  1  Hydrolase_4    Serine aminopeptidase, S33
    7.2e-06   26.3   0.0    4.2e-05   23.8   0.0    1.9  2  Thioesterase   Thioesterase domain
    9.2e-06   25.7   0.1    0.00023   21.2   0.0    2.7  3  Abhydrolase_4  TAP-like protein
    1.2e-05   24.2   0.0    7.8e-05   21.5   0.0    1.9  2  Ndr            Ndr family
    3.2e-05   23.5   0.1      0.089   12.3   0.0    2.3  2  Peptidase_S9   Prolyl oligopeptidase family
     0.0012   18.6   0.0     0.0032   17.2   0.0    1.9  1  FSH1           Serine hydrolase (FSH1)
      0.002   17.9   0.0       0.19   11.5   0.0    2.2  2  Abhydrolase_5  Alpha/beta hydrolase family
      0.002   17.8   0.0     0.0056   16.4   0.0    1.8  1  Esterase       Putative esterase
     0.0022   17.9   0.0      0.071   13.0   0.0    2.3  2  Ser_hydrolase  Serine hydrolase
  ------ inclusion threshold ------
      0.028   14.1   0.2       0.85    9.2   0.0    2.5  2  Abhydrolase_8  Alpha/beta hydrolase
       0.14   11.9   0.0       0.26   11.0   0.0    1.4  1  PGAP1          PGAP1-like protein
       0.15   12.0   0.4       0.45   10.4   0.0    2.0  2  Lipase_3       Lipase (class 3)
       0.18   11.1   0.1       0.36   10.1   0.1    1.4  1  DUF915         Alpha/beta hydrolase of unknown function (DUF9


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3       2.3   2.7e+03      76      99 ..      25      53 ..      10      92 .. 0.46
   2 !   93.2   4.6     3e-29   3.6e-26       1     218 [.      97     355 ..      97     357 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.3
                   HHHHHHHHHCC..........EEEEES-..-- CS
  Abhydrolase_6 76 Galalaaapla........lvvgvlldpppta 99
                   +a++ aaa la        lv+++  dp   a
     KIR63037.1 25 AAVGVAAAGLAagvvseraLVRRLKADP---A 53
                   3333332222222212221222222222...2 PP

  == domain 2  score: 93.2 bits;  conditional E-value: 3e-29
                    EEEE--GC.....GC.HHHHHHHHCCT.CEEEEE--TTSTS-GGCS--HHHCHHHHHHHCCTT.....TTSEEEEEETCHHHHHHHHHHCC..... CS
  Abhydrolase_6   1 vlllHGagssassWl.vapLaallaag.vhvlapDlpGhGrsdpppldledladlaalldelaa...gggpvvlvGHSlGGalalaaapla..... 86 
                    v+l+HG+ ++ + ++ ++ ++a ++++ +  +a+D pGhGrs +  ++  dla+l ++l+++++     gp vlvGHS+GG+  +a+a l      
     KIR63037.1  97 VVLVHGFCLDMGTFHfQRKMLAERGEHrI--VAYDQPGHGRSGRLETGEYDLAALGRTLRRVIDrttPEGPLVLVGHSMGGMTIMAFAELYpelfg 190
                    8*****99999999668888777777746..********988666655555566666666665555566777**********888855555899** PP

                    ...EE.EEES-..............----TTT..........S----TTHHHHHH.......TT-C....CCCHCCH.......S-HSCCCCHHHC CS
  Abhydrolase_6  87 .lvvg.vlldp............pptalpagl..........laaalelllalla.......llrl....lawlsre.......plprlfladeda 140
                     +vvg vl+++            p     a+l          ++ a        +       ++r+     awl ++        +++ +++ ++ 
     KIR63037.1 191 dRVVGtVLMATsggllaetklvaP-----ALLgrvgapvlymVSNAT-------RyggpaidAARKstsnVAWLLTRkygfgtpRPSPALVSYVEL 274
                    988889*****6555555444431.....222222112222211111.......111222222222555567773333455544222233332221 PP

                    ...CCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEECTT-CHHH.HCHHCCCH.STTEEETCE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 141 ...daawrarlarlaallaglgllpaaawadlpvpllvlggeDplvp.rllerlla.qagarlpvvlpgaGHlphleepdeva 218
                       +++  +  + l+ l+++  + ++aa+a++pv++ v+g++D++ p  + e++ + +++a++   + ++GH+++le++dev+
     KIR63037.1 275 mnsRTSADTVTRYLRTLATHSRYPALAALAGTPVLV-VVGDKDMITPvTHSEEIVRrLPHAEY-LKIHDSGHVVMLEHADEVN 355
                    342333333333333444444455599*********.66*****6663336666668888888.99**********999**97 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   0.0   3.6e-28   4.4e-25       1     256 [.      95     350 ..      95     351 .. 0.92

  Alignments for each domain:
  == domain 1  score: 88.8 bits;  conditional E-value: 3.6e-28
                    SEEEEE-STTTCGGGGTTGHHHHHHHHT.TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHH.HHHCTTSSEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakd.gfdvillDlrGvgySspapacinddygtasvaddldri.ldalgddkltlvGhSmGGmialayaaey 94 
                    p++v++hG++   + ++     + La++ +++++++D++G+g+S +  +    +y +a++ + l+r+    ++ ++l+lvGhSmGGm+ +a+a++y
     KIR63037.1  95 PTVVLVHGFCLDMGTFHF--QRKMLAERgEHRIVAYDQPGHGRSGRLET---GEYDLAALGRTLRRViDRTTPEGPLVLVGHSMGGMTIMAFAELY 185
                    78*********9998888..88899999********************9...9************7736666667777****************** PP

                    ....GGGEEEEEEESE......CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH..HCHHHCCHH.HHHHH CS
  Abhydrolase_1  95 ....perVkalvllga......idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf..pdkskrfps.sgsdn 177
                         +rV + vl+++       +   ++  + r  a+ +    + +++ +    a++++++ +a+l++r        f  p+ s  + s  + +n
     KIR63037.1 186 pelfGDRVVGTVLMATsggllaETKLVAPALLGRVGAPVLYMVSNATRYGGPAIDAARKSTSNVAWLLTRKYG-----FgtPRPSPALVSyVELMN 276
                    99999***************988888999999999999********************************443.....255777777666689999 PP

                    CHHHHHHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 178 asslatgalksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafleg 256
                    + ++a +   ++ + +t+ + + l  l +      p+lv+ g++D+++p  ++e++ + lp++++++i d+gH + le+
     KIR63037.1 277 SRTSADTVTRYLRTLATHSRYPALAALAG-----TPVLVVVGDKDMITPVTHSEEIVRRLPHAEYLKIHDSGHVVMLEH 350
                    99999999******************999.....7*****************************************998 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   1.2   1.6e-22   1.9e-19       5     236 ..      95     348 ..      92     351 .. 0.75

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 1.6e-22
  Hydrolase_4   5 avvvlvHGlaehsgryaelaeaLaaqG.favyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypd.. 99 
                   +vvlvHG++  +g ++   + La++G   ++a+D+ GhGrs+       ++  + + l+ ++++     pe pl+l+GhSmGG++ +++++ yp+  
   KIR63037.1  95 PTVVLVHGFCLDMGTFHFQRKMLAERGeHRIVAYDQPGHGRSGRLETGEYDLAALGRTLRRVIDRTT---PEGPLVLVGHSMGGMTIMAFAELYPElf 189
                  58************************94579***********8888888888888888888876655...999**********************999 PP

  Hydrolase_4 100 ..kvaglilsaPalkikaklk...appllklllkllgkllpklqv...................snnlkadslsrdpevvaayeadplvhgkitvrll 173
                    +v g +l+a+  ++ a++k   +  l ++ + +l  +    +                    +++  +          a++   +l+  +++++++
   KIR63037.1 190 gdRVVGTVLMATSGGLLAETKlvaPALLGRVGAPVLYMVSNATRYggpaidaarkstsnvawllTRKYGFGTPRPS---PALVSYVELMNSRTSADTV 284
                  99999*****999888777643112222233444444444444447779999997666664443333333333333...3455678899999999999 PP

  Hydrolase_4 174 lelldamkrleeraakit...lPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHelln 236
                  +  l+++++  +  a +    +P+l++ G++D +++   s+e+++rl++   ++  ++   H ++ 
   KIR63037.1 285 TRYLRTLATHSRYPALAAlagTPVLVVVGDKDMITPVTHSEEIVRRLPH--AEYLKIHDSGHVVML 348
                  999998876554433333556***************************5..555555666666655 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   3.5e-08   4.2e-05      28      89 ..     123     187 ..     101     204 .. 0.72
   2 ?   -0.0   0.0      0.66   7.9e+02     172     224 ..     307     355 ..     263     362 .. 0.66

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3.5e-08
                   EEEEEECSTTST...SHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHH CS
  Thioesterase  28 vevlavqlpgre...rdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLes 89 
                    +++a+ +pg++   r e    ++++l   +   + ++ pegP++l+GhS+Gg+  +++A+ + +
    KIR63037.1 123 HRIVAYDQPGHGrsgRLETGEYDLAALGRTLRRVIDRTTPEGPLVLVGHSMGGMTIMAFAELYPE 187
                   4577777777774333333444555555668889********************98888887655 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.66
                   CEEEEEEGSS-CTCCCCCCCHCHCHCTCESCEEEEEESSHCCHHHSHHHHHHH CS
  Thioesterase 172 ratlfngsddklkdldtlelaerweqktsgevsvhvlegdhfylledrleavl 224
                   ++ + +g++d ++ + +   +e   ++ +++  +++ +++h+ +le + ++v 
    KIR63037.1 307 PVLVVVGDKDMITPVTH--SEE-IVRRLPHAEYLKIHDSGHVVMLE-HADEVN 355
                   44555555555555552..333.66788888888888888888886.766665 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       7.6     9e+03      37      52 ..      43      58 ..      37      72 .. 0.72
   2 ?    0.9   0.0       0.4   4.8e+02      32      76 ..      92     136 ..      78     141 .. 0.71
   3 !   21.2   0.0   1.9e-07   0.00023      34      92 ..     305     363 ..     289     364 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 7.6
  Abhydrolase_4 37 vLllqnerDpaTPyeg 52
                   +L+   + Dpa Py+ 
     KIR63037.1 43 ALVRRLKADPADPYAD 58
                   5666667899999875 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.4
  Abhydrolase_4  32 kgaapvLllqnerDpaTPyegakklakalggavlvtvegeGHgal 76 
                    +g+++v l+ +    +  ++ ++k+  + g+ + v +++ GHg +
     KIR63037.1  92 PGHPTVVLVHGFCLDMGTFHFQRKMLAERGEHRIVAYDQPGHGRS 136
                    4555555555554333446788899999999999********976 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 1.9e-07
  Abhydrolase_4  34 aapvLllqnerDpaTPyegakklakalggavlvtvegeGHgalaagntCvdkavdaYLl 92 
                     +pvL++ +  D +TP    +++ ++l+ a+ +  +++GH ++ ++ + v+ a+ ++L+
     KIR63037.1 305 GTPVLVVVGDKDMITPVTHSEEIVRRLPHAEYLKIHDSGHVVMLEHADEVNGALVRFLE 363
                    38****************************************99999999999999985 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.17   2.1e+02      62     132 ..     129     201 ..      79     207 .. 0.68
   2 !   21.5   0.0   6.5e-08   7.8e-05     162     279 ..     249     365 .]     239     365 .] 0.83

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.17
                 E-TT-STT-----TT-----HHHHHTTHHHHHHHHT--.-EEEEEETHHHHHHHHHHHHSGG....GEEEEEEES- CS
         Ndr  62 daPGqeegaaslpedyqfpslddladqllavldhfklk.sviglGvgaGAyilarfalkhpe....rveglvLini 132
                 d PG+      l ++     l  l+ +l  v+d  + +  ++ +G   G   ++ fa  +pe    rv+g vL+ +
  KIR63037.1 129 DQPGHGRSG-RLETG--EYDLAALGRTLRRVIDRTTPEgPLVLVGHSMGGMTIMAFAELYPElfgdRVVGTVLMAT 201
                 666665543.33333..23467788888888888776525777899999999999999888544448999999975 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 6.5e-08
                 HHHHHHHHS-HHHHHHT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-------TTSSSS-EEEEEETTSTTHHHHHHHHHHS-T.TTEEEEEETT-TT- CS
         Ndr 162 kdlllahkFgkeeksensdlvreyrkllkerlnsknlelyleaynkRrdleierkklevkvllvvGdkspfvdevvevnskldk.kkttllkvadsggl 259
                 +  ll++k+g  + + ++ lv +y +l+++r++ + +++yl+++               +vl+vvGdk   +  v + ++ + +  ++++lk++dsg  
  KIR63037.1 249 VAWLLTRKYGFGTPRPSPALV-SYVELMNSRTSADTVTRYLRTLATHSRYPALAALAGTPVLVVVGDKDMIT-PVTHSEEIVRRlPHAEYLKIHDSGHV 345
                 557888999988888888999.9*******************9999888888888888999******97654.4444444444325789********** PP

                 HHHH-HHHHHHHHHHHHHHT CS
         Ndr 260 vleeqPdklaeslklflkGl 279
                 v+ e+ d +  +l  fl+Gl
  KIR63037.1 346 VMLEHADEVNGALVRFLEGL 365
                 *****************995 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00063      0.75      63      90 ..     163     190 ..     113     201 .. 0.85
   2 !   12.3   0.0   7.4e-05     0.089     129     188 ..     289     346 ..     267     363 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00063
                   GGGEEEEEETHHHHHHHHHHHH-GGG-S CS
  Peptidase_S9  63 serlaitGgSyGGyltgaalnqrpdlFk 90 
                   +  l++ G+S GG++++a ++  p+lF+
    KIR63037.1 163 EGPLVLVGHSMGGMTIMAFAELYPELFG 190
                   556899********************96 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 7.4e-05
                   HHHHHH-CGGG--..---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SST CS
  Peptidase_S9 129 kelspyspldnvk..aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgv 188
                   ++l++ s + +++  a +p+L+++G++D  +p+ +++++v++L      +++l  +d+gH+v
    KIR63037.1 289 RTLATHSRYPALAalAGTPVLVVVGDKDMITPVTHSEEIVRRLPH----AEYLKIHDSGHVV 346
                   55555666666556799*************************976....5677777777754 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.7e-06    0.0032     158     202 ..     302     346 ..     137     347 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.7e-06
        FSH1 158 dkiqtptLhvlGelDtvvdeerseaLaeafknsskvlkHpggHfv 202
                     tp+L v+G++D++ + + se++++   + + +  H+ gH v
  KIR63037.1 302 ALAGTPVLVVVGDKDMITPVTHSEEIVRRLPHAEYLKIHDSGHVV 346
                 3348****************************999999*****98 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00016      0.19      37      87 ..     145     199 ..     134     210 .. 0.74
   2 ?    4.1   0.0     0.029        34      88     139 ..     295     343 ..     273     349 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
  Abhydrolase_5  37 nlavlgknkaeeiikeapklekfvvgGhslGGvvasrfaa.....eeekiegvvfl 87 
                    +la lg+   + i + +p+   +v+ Ghs+GG+ +  fa+       +++ g v++
     KIR63037.1 145 DLAALGRTLRRVIDRTTPE-GPLVLVGHSMGGMTIMAFAElypelFGDRVVGTVLM 199
                    5777777666656666676.55***************9985433222455555555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.029
  Abhydrolase_5  88 asYPekdelselskkvlsivgteDgvlnvkslekakkflpkdtkvvsieGgn 139
                    + YP+      ++++vl +vg++D + +v++ e+  ++lp+ +++++i+   
     KIR63037.1 295 SRYPAL--AALAGTPVLVVVGDKDMITPVTHSEEIVRRLPH-AEYLKIHDSG 343
                    557752..3446789***********************996.5666666555 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.7e-06    0.0056      94     141 ..     144     190 ..      74     209 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.7e-06
                 HC.HHHHTHHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCC CS
    Esterase  94 ye.tfltqeLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFg 141
                 y+  +l  +L  ++d + +  p   +++G+SmGG++ +  a  +p++Fg
  KIR63037.1 144 YDlAALGRTLRRVIDRTTPEGPL--VLVGHSMGGMTIMAFAELYPELFG 190
                 44456677777777777776666..***********************8 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   5.9e-05     0.071      52      89 ..     161     201 ..      97     215 .. 0.79
   2 ?    2.7   0.0     0.085     1e+02     102     153 ..     291     345 ..     267     356 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.9e-05
                    C-STTEEEEEETCHHHHHHHHHH...HTTSSSEEEEEEET- CS
  Ser_hydrolase  52 aaeekvvlvAHSlgclavlhaae...lqlakkvagalLVap 89 
                    + e+++vlv HS+g ++++++ae       ++v g +L a 
     KIR63037.1 161 TPEGPLVLVGHSMGGMTIMAFAElypELFGDRVVGTVLMAT 201
                    335779****************9987788899999999886 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.085
                    GCGCTTS-SSH..HCCHCEEEEETTBTTC-HHHHHHHHHHC.T-EEEEETT-TTS CS
  Ser_hydrolase 102 laefaplprek..lpfpslvvaSenDpyvsfeeaeelaeaw.gaelvdlgeaGHi 153
                    la+ +++p+ +  +  p lvv  + D + +++++ee+ +++  ae  ++  +GH+
     KIR63037.1 291 LATHSRYPALAalAGTPVLVVVGDKDMITPVTHSEEIVRRLpHAEYLKIHDSGHV 345
                    4444444443311345669*******************99856899999999997 PP

>> Abhydrolase_8  Alpha/beta hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00071      0.85      89     145 ..     146     205 ..     125     231 .. 0.62
   2 ?    2.3   0.1     0.095   1.1e+02      61     105 ..     244     295 ..     227     306 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00071
  Abhydrolase_8  89 agAaeLnallrdlratsvpgqhlallgHSYGSlvaslAldd....aase.VsdvvlyGSPGl 145
                     +   L + lr +  +++p+++l l+gHS G ++    ++      + + V  v ++ S Gl
     KIR63037.1 146 LA--ALGRTLRRVIDRTTPEGPLVLVGHSMGGMTIMAFAELypelFGDRvVGTVLMATSGGL 205
                    33..36677777777889*************9875443333345533330333444455554 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.095
  Abhydrolase_8  61 esvAviAWl.....gYeaP..agaskevatddrAaagAaeLnallrdlrats 105
                    +s+  +AWl     g+ +P  + a++  ++  + +++A  + ++lr l+++s
     KIR63037.1 244 KSTSNVAWLltrkyGFGTPrpSPALVSYVELMNSRTSADTVTRYLRTLATHS 295
                    4778889976665577777779999999999999**************9988 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00022      0.26      88     104 ..     161     177 ..     143     204 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00022
       PGAP1  88 keptsviliGHSmGGiv 104
                 +++  ++l+GHSmGG+ 
  KIR63037.1 161 TPEGPLVLVGHSMGGMT 177
                 5556689********85 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       5.5   6.6e+03      69      92 ..      22      45 ..      21      53 .. 0.78
   2 ?   10.4   0.0   0.00037      0.45      17      77 ..     121     176 ..     105     188 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.5
                EEEETHHHHHHHHHHHHHHHTT-S CS
    Lipase_3 69 vtGHSLGgalAlLaaldlvengen 92
                v+G   G a A Laa ++ e+   
  KIR63037.1 22 VVGAAVGVAAAGLAAGVVSERALV 45
                677788999999999988887755 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00037
                 ----EEE-HHHH-GTT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHH CS
    Lipase_3  17 ldfslteakellekeggkvhsgfleayeeslreqvlkelkrllekypeysivvtGHSLGga 77 
                  +++++ +++  ++ +g++++g ++++   l  ++++ ++r   + p   +v++GHS+Gg 
  KIR63037.1 121 GEHRIVAYDQPGHGRSGRLETGEYDLAA--LGRTLRRVIDRTTPEGP---LVLVGHSMGGM 176
                 5566666777667778888888888877..66666666666666666...*********95 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1    0.0003      0.36     107     124 ..     168     185 ..     166     188 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0003
      DUF915 107 avGhSmGglaltsYleey 124
                 +vGhSmGg++++ ++e y
  KIR63037.1 168 LVGHSMGGMTIMAFAELY 185
                 7*************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2385.59
//
Query:       KIR63038.1  [L=233]
Description: uracil-DNA glycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-20   74.2   0.0    1.5e-20   73.8   0.0    1.2  1  UDG       Uracil DNA glycosylase superfamily


Domain annotation for each model (and alignments):
>> UDG  Uracil DNA glycosylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.0   8.1e-25   1.5e-20       3     149 ..      61     215 ..      59     221 .. 0.84

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 8.1e-25
                 C-CTT-SEEEEESSTCHH.HHHHSSSS.-STT........--HHHHHHHCCCCCCCHHG..........CTEEEEESSS....SEC.GCTTCCCCTCCH CS
         UDG   3 egppdakvvivGeaPgae.edatglpFsgrag........nllrkllneaglkrdlese..........qgvyitnvvkcrppgnr.dtptsaeikaca 81 
                 +gp +++v+i+G++P+++ ++a+gl Fs+r g        n +++l +++g+++    +          qgv+++n v+    + r +tp s+  + ++
  KIR63038.1  61 CGPGQTRVLILGQDPYHKaGQAHGLSFSVREGvsvppslrNVFKELTEDLGVAK----PrsgnldgwaaQGVLLLNSVL----TVRqATPGSHA-NKGW 150
                 6999****************************6555555555555555556666....15566****************....85668******.**** PP

                 H.HHHHHHHHHH...SSE.EEEESHHHHHH..HHHHSCESCCCSCT..SEEEEES-SSTTTTT.TTTSHHHHHHH CS
         UDG  82 p.lleeeiellk...prl.ivllGktaakallgeklgklrgklleak.irvlplphPsplnrn.ffksnpelkae 149
                 + ++++ i++l    +r+ ++l+G +a k+           +l+ +  + vl   hPsp+n + f +s+p++ ++
  KIR63038.1 151 EeFTDATIRALDaldQRVvFLLWGGYARKK----------AALVTNPqHVVLEAGHPSPMNPRgFLGSRPFSATN 215
                 ***************9988***********..........56666655*************99888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1554.16
//
Query:       KIR63039.1  [L=286]
Description: hypothetical protein TK50_19240 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-10   40.6   9.6    3.7e-10   40.6   9.6    1.7  2  MDMPI_N   Mycothiol maleylpyruvate isomerase N-terminal domai
  ------ inclusion threshold ------
      0.016   16.0   1.8      0.016   16.0   1.8    3.0  2  MDMPI_C   MDMPI C-terminal domain
      0.024   15.1   7.2      0.071   13.6   7.2    1.8  1  DinB_2    DinB superfamily
      0.026   14.4   0.5        4.6    7.2   0.1    2.8  2  DUF2249   Uncharacterized conserved protein (DUF2249)
      0.044   14.3   0.0       0.16   12.5   0.0    1.8  2  SCP2      SCP-2 sterol transfer family


Domain annotation for each model (and alignments):
>> MDMPI_N  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   9.6     1e-13   3.7e-10       1     141 []      19     160 ..      19     160 .. 0.87
   2 ?   -3.4   0.0       3.9   1.4e+04      79      94 ..     230     245 ..     223     264 .. 0.68

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 1e-13
     MDMPI_N   1 lreewaalaalvagLtdeqwaapspcpGWtvadlvaHlarsaralaaalaaegaesalardaaaalvtaad........aeavdlaaslapeallaafr 91 
                 l+++++++a+lv++++  q       + W+vad v Hl++ a + a+ l+   + ++l+ ++++a  + +         +   +   +++p+ lla fr
  KIR63039.1  19 LAAATDRFARLVESVDRPQS---MVTAHWSVADTVVHLVSVAWWYATKLDP--EHPPLPIPGLDARLPTVTvdtiegvnDLVLAHLTERDPAPLLAQFR 112
                 6899***********96543...33889********************977..46667777666544444466888888******************** PP

     MDMPI_N  92 aavtrlaaalaalppdaiadrlgipggprslgeflrtrlvEavvHglDla 141
                 a v++ +   a+ +pd+  +++  +  +++l+      + E+ vHg+D+a
  KIR63039.1 113 ADVAKILSIAADRDPDELLPWF--GDARAPLAGLFGHLVNELLVHGWDIA 160
                 **********************..888888889***************97 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.9
     MDMPI_N  79 aslapeallaafraav 94 
                 a+ a ++++++f+ a+
  KIR63039.1 230 APGARPDVRVRFDPAA 245
                 5555566666665554 PP

>> MDMPI_C  MDMPI C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   1.6      0.34   1.2e+03      39      87 ..      98     138 ..       4     142 .. 0.64
   2 ?   16.0   1.8   4.5e-06     0.016      50      89 ..     228     274 ..     152     276 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.34
     MDMPI_C  39 hatdggra.rlalwadgadatvrGtaadlllllwGRlspddtlevdGdra 87 
                 h t+ ++a +l        a++r++ a +l  ++ R + +  l + Gd++
  KIR63039.1  98 HLTERDPApLL--------AQFRADVAKILSIAADRDPDEL-LPWFGDAR 138
                 22222222233........6777777777777777766665.66666665 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 4.5e-06
     MDMPI_C  50 lwadg..adatvrGtaadlllllwGRlspddt.....levdGdrall 89 
                  +a g  +d++vr ++a+l l l+GR+s  +t     +++ G+r++l
  KIR63039.1 228 IAAPGarPDVRVRFDPAALNLMLFGRVSRVRTaltggVSIRGRRPWL 274
                 233335599********************998888888888888776 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   7.2     2e-05     0.071      12     125 ..      18     156 ..       2     159 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
      DinB_2  12 lledlteeelnrqpspgk........wsiawllaHlgnveelllerlr..geeaprpgldpltp....................psaaealaylaevra 80 
                 +l++ t+  ++   s ++        ws+a ++ Hl++v   ++ +l    ++ p+pgld + p                     ++a +la++++ +a
  KIR63039.1  18 ALAAATDRFARLVESVDRpqsmvtahWSVADTVVHLVSVAWWYATKLDpeHPPLPIPGLDARLPtvtvdtiegvndlvlahlteRDPAPLLAQFRADVA 116
                 44444442222222222222333444************99888888885444444677777777777777788888887877778************** PP

      DinB_2  81 rllallealtdadldrpltaphpglgkltlgdvllfvlqHeqhHl 125
                  +l++ ++ ++++l      p+ g ++ +l+ +++++++++  H 
  KIR63039.1 117 KILSIAADRDPDELL-----PWFGDARAPLAGLFGHLVNELLVHG 156
                 ********8886554.....3558889999999999999888776 PP

>> DUF2249  Uncharacterized conserved protein (DUF2249)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0013       4.6      32      47 ..      99     114 ..      92     120 .. 0.83
   2 ?    4.6   0.0    0.0084        30      29      59 ..     119     152 ..     117     160 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0013
     DUF2249  32 vndhdPkpLlyqLear 47 
                 +  +dP pLl+q++a 
  KIR63039.1  99 LTERDPAPLLAQFRAD 114
                 678**********987 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0084
     DUF2249  29 lelvndhdPkpLlyqLearr...pgffsweyler 59 
                 l + +d+dP  Ll+ + + r   +g f + + e 
  KIR63039.1 119 LSIAADRDPDELLPWFGDARaplAGLFGHLVNEL 152
                 67899***********998877777777766665 PP

>> SCP2  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         2   7.3e+03      54      76 ..      15      37 ..       5      42 .. 0.68
   2 ?   12.5   0.0   4.4e-05      0.16      35      88 ..     217     269 ..     206     271 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2
                -SEEEEEEHHHHHHHHCTSS-HH CS
        SCP2 54 advtlslsledllelaegklnpq 76
                a   l+++++++++l+e+  +pq
  KIR63039.1 15 AQEALAAATDRFARLVESVDRPQ 37
                55567888888888888775555 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4.4e-05
                 EEEEETTSTEEESSCTTBS-SEEEEEEHHHHHHHHCTSS-HHHHHHTTSSEEEC CS
        SCP2  35 ltldlkegqldvaakdegkadvtlslsledllelaegklnpqkafmqgkLkieG 88 
                 +tl+l+ g +++aa++ +++dv ++ ++++l  ++ g++   + +++g ++i G
  KIR63039.1 217 ITLVLHRGLVSIAAPG-ARPDVRVRFDPAALNLMLFGRVSRVRTALTGGVSIRG 269
                 7899998888888886.5********************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1964.21
//
Query:       KIR63040.1  [L=225]
Description: peptidase M22 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-23   82.8   2.7    5.6e-23   82.0   2.7    1.5  1  Peptidase_M22  Glycoprotease family
  ------ inclusion threshold ------
       0.35   10.4   2.4       0.56    9.7   2.4    1.3  1  5TM-5TMR_LYT   5TMR of 5TMR-LYT


Domain annotation for each model (and alignments):
>> Peptidase_M22  Glycoprotease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   2.7   6.2e-27   5.6e-23      25     148 ..      35     148 ..      14     191 .. 0.90

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 6.2e-27
                    HHHHHHHHHHHHHHHHHHHHTSTGGGEEEEEEEEESS-HHHHHHHHHHHHHHHHHCT--EEEEEHHHHHHHCCHCTSECSSCEEEEESSSTEEEEE CS
  Peptidase_M22  25 asraHserllplieealaeaglsledldaIavtkgPGlftgLrvGvsfAkglalalnkPlvgVnhleahalaarleekeefPvvllvsGghtqvyl 120
                     +raH e l p ++++lae++ +++dl+aI+++ gPG ftgLrvG+ +A ++a  l++  +gV++l+++ + a       +Pv+++ ++++ +vy+
     KIR63040.1  35 DARAHGELLAPQVHAVLAEVDARPTDLTAIVAGLGPGPFTGLRVGLVTAATMAQVLGVAAYGVCSLDGIGHPAAAG----EPVLAAGDARRREVYW 126
                    589********************************************************************99743....49************** PP

                    ECTTEEEEEEEESSSEHHHHHHHHHHHH CS
  Peptidase_M22 121 vkegryeilgetlddaagealdkvarll 148
                    +    y+  g+++   ag+ +d++a + 
     KIR63040.1 127 A---VYDGAGQRI---AGPDVDAPAVAA 148
                    *...******998...999999988665 PP

>> 5TM-5TMR_LYT  5TMR of 5TMR-LYT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.4   6.2e-05      0.56      48      83 ..      60      95 ..      46     110 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 6.2e-05
  5TM-5TMR_LYT 48 aigvvvaGllgGplvGliagliaglhRyllgGftal 83
                   ++++vaGl  Gp++Gl +gl+ +++   + G++a 
    KIR63040.1 60 DLTAIVAGLGPGPFTGLRVGLVTAATMAQVLGVAAY 95
                  5789*********************99999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1865.05
//
Query:       KIR63041.1  [L=348]
Description: O-sialoglycoprotein endopeptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-92  310.1   2.7    1.8e-92  309.9   2.7    1.0  1  Peptidase_M22   Glycoprotease family
     0.0001   22.1   0.0     0.0033   17.1   0.0    2.1  2  Carbam_trans_N  Carbamoyltransferase N-terminus
     0.0095   15.7   0.9      0.022   14.5   0.9    1.7  1  FGGY_C          FGGY family of carbohydrate kinases, C-termin


Domain annotation for each model (and alignments):
>> Peptidase_M22  Glycoprotease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.9   2.7     3e-96   1.8e-92       2     270 ..      27     317 ..      26     318 .. 0.96

  Alignments for each domain:
  == domain 1  score: 309.9 bits;  conditional E-value: 3e-96
                    CEXEEEEEEEEE....SSSSHHHHHHHHHHHHHHHHHHHHHHHTSTGGGEEEEEEEEESS-HHHHHHHHHHHHHHHHHCT--EEEEEHHHHHHHCC CS
  Peptidase_M22   2 vlanvvasqkelhakyGGvvPelasraHserllplieealaeaglsledldaIavtkgPGlftgLrvGvsfAkglalalnkPlvgVnhleahalaa 97 
                    +la+ +as+ + ha++GGvvPe+asraH e+++p++++alaeag++++d+daIavt+gPGl+++L+vGv++Akg+ala++kP++gVnhl+ah++  
     KIR63041.1  27 LLADALASSVAEHARFGGVVPEVASRAHLEAIVPTMDRALAEAGVTIADIDAIAVTSGPGLAGALLVGVAAAKGYALAAEKPVYGVNHLAAHVAVD 122
                    789999999*************************************************************************************** PP

                    HCTSEC.SSC.EEEEESSSTEEEEEECT..TEEEEEEEESSSEHHHHHHHHHHHHT..SSCCHHHHHHHCTC..S.......EET........TEE CS
  Peptidase_M22  98 rleeke.efP.vvllvsGghtqvylvke..gryeilgetlddaagealdkvarllglpypggpkieklakeg..kkiefprplkg........ldf 179
                     le+++  +P ++llvsGgh++++lv++  + ++ lg t+ddaagea+dkvarllglp+pggp +++ a  g   +i fpr l+         +df
     KIR63041.1 123 TLEHGPlPEPaIALLVSGGHSSLLLVDDlaRGVTPLGATIDDAAGEAFDKVARLLGLPFPGGPYVDREAAAGdpAAIGFPRGLTAakdlaahrYDF 218
                    ***8889999*******************999**************************************998777********9*********** PP

                    E.CHHHHHHHHHHST.T.......HHHHHHHHHHHHHHHHHHHHHHHHHHCTBSEEEEESGGGGXHHHHHCHCCHHHHTTSEEEXXXHHHHSSXCH CS
  Peptidase_M22 180 sfsGlktavlkelek.e.......vedlaasfqeavvdhlvekteralklpkakelvilGGvaankrLrealeeeaeelglkliiPplkyctdnaa 267
                    sfsGlktav++++e+ +       v+d+aasfqeav+d+l+ k+ +a++ +++++lvi+GGvaan+rLr   e+ a++lg+++ +P++k+ctdn+a
     KIR63041.1 219 SFSGLKTAVARWVEArQragepvpVADVAASFQEAVCDVLTAKALAACQAHGVDTLVIGGGVAANSRLRVLAEQRAAKLGIRVRVPRPKLCTDNGA 314
                    *************55435789*************************************************99999999****************** PP

                    HHH CS
  Peptidase_M22 268 mia 270
                    m+a
     KIR63041.1 315 MVA 317
                    *98 PP

>> Carbam_trans_N  Carbamoyltransferase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.012        71      16      69 ..      33      83 ..       7      98 .. 0.73
   2 !   17.1   0.0   5.6e-07    0.0033     246     306 ..     226     284 ..     191     292 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.012
  Carbam_trans_N 16 valvddgklvaaveeErltrikrdqklpklkaidyaleeagvelsdiDqivfde 69
                    +  v +  +  +v  E  +r + ++ +p+   +d al+eagv   diD i++  
      KIR63041.1 33 ASSVAEHARFGGVVPEVASRAHLEAIVPT---MDRALAEAGVTIADIDAIAVTS 83
                    55555555555666666666666666666...7889**************9876 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 5.6e-07
  Carbam_trans_N 246 kvhdffeasalrlkearekdedlaAsiqvflErlvvevlnivyeklkirnLclaGGvalNi 306
                     +v++ +ea +   + ++ +  d+aAs+q+++ +++      + + +++  L + GGva+N 
      KIR63041.1 226 AVARWVEARQ--RAGEPVPVADVAASFQEAVCDVLTAKALAACQAHGVDTLVIGGGVAANS 284
                     4444444444..222233335**************************************95 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.9   3.7e-06     0.022     129     194 ..     252     318 ..     192     321 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.7e-06
      FGGY_C 129 eavalqlrailealekdsgkpldrlavdGGgskn...dllmqllAdilgvpVerpktaeatalGaAilA 194
                 eav+  l    +al++++ + +d+l++ GG + n   ++l++  A  lg+ V++p+++ +t  Ga+++A
  KIR63041.1 252 EAVCDVLT--AKALAACQAHGVDTLVIGGGVAANsrlRVLAEQRAAKLGIRVRVPRPKLCTDNGAMVAA 318
                 55555443..46788898999*********99551224677889**********************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2357.63
//
Query:       KIR63042.1  [L=84]
Description: hypothetical protein TK50_19260 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       158  (0.00881254); expected 358.6 (0.02)
Passed bias filter:                      135  (0.0075297); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 654.16
//
Query:       KIR63043.1  [L=247]
Description: hypothetical protein TK50_19265 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-17   63.3   0.1    3.7e-17   62.9   0.1    1.2  1  DUF4142        Domain of unknown function (DUF4142)
  ------ inclusion threshold ------
      0.083   12.6   0.1       0.16   11.7   0.1    1.5  1  TPP_enzyme_M   Thiamine pyrophosphate enzyme, central domain
        4.9    7.2   7.1        1.1    9.2   1.0    2.6  2  SNN_transmemb  Stannin transmembrane


Domain annotation for each model (and alignments):
>> DUF4142  Domain of unknown function (DUF4142)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.1   6.1e-21   3.7e-17       3     137 ..      49     181 ..      47     183 .. 0.96

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 6.1e-21
     DUF4142   3 daeflakaaaaglfeveaaklAlqkaknpevkaFAqqmvadhtkaneeLkalaskkgvtlpdsteldaeaqakldkLkalsgaaFDkaYleaqvaahqk 101
                 d ++la +  agl e+ a+++A++k+++++v++ ++++ ++h  +++ + ++a+k+g+tlp   + +ae++  l+++++ +g +FD+ +++    ah k
  KIR63043.1  49 DMTLLAGVRLAGLWEMPAGEMAAEKGQSARVREIGAEISRQHGVLDQLVVDAANKLGATLP--SDATAEQKGWLKEMQESTGGRFDQIFVTRLRVAHGK 145
                 6778888999***************************************************..5889******************************** PP

     DUF4142 102 avellekaaasgkdaelkafaektlptlqaHleeae 137
                    ++ +  as +da ++++a+++   +  H++++e
  KIR63043.1 146 IFPVIGAVRASTRDATVRKLADEANDFVSDHMAMLE 181
                 *********************************987 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.7e-05      0.16      63     132 ..      33     102 ..      16     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.7e-05
                   SGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTTTTTTTT-.EEEEEESSCCCCTTCC--SEEEECTHHH CS
  TPP_enzyme_M  63 lglhgskaanealeeaDlvlalGarfddirttgsepefapea.kiihididpaeigknyqvdlaivgdvke 132
                    g++ +++an+ l+ aD  l+ G+r+       +  e+a e+ +   +    aei++++ v  ++v d+++
    KIR63043.1  33 PGVAVAAPANAQLNAADMTLLAGVRLAGLW-EMPAGEMAAEKgQSARVREIGAEISRQHGVLDQLVVDAAN 102
                   4777799******************98843.33555888888899**************999999999886 PP

>> SNN_transmemb  Stannin transmembrane
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.6      0.13   7.9e+02      21      27 ..      26      32 ..      19      33 .. 0.77
   2 ?    9.2   1.0   0.00019       1.1      10      25 ..     219     234 ..     217     236 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.13
  SNN_transmemb 21 vAALGAL 27
                   vAALG L
     KIR63043.1 26 VAALGVL 32
                   89**987 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00019
  SNN_transmemb  10 GVVTVIViLIAvAALG 25 
                    GV T +V L+ +AALG
     KIR63043.1 219 GVSTTVVWLVFIAALG 234
                    9**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1763.40
//
Query:       KIR63044.1  [L=393]
Description: ROK family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-48  164.9   0.2    3.6e-48  164.5   0.2    1.1  1  ROK          ROK family
     0.0091   15.9   3.6      0.018   14.9   0.3    2.8  3  MarR_2       MarR family
  ------ inclusion threshold ------
      0.015   15.2   0.0       0.03   14.3   0.0    1.4  1  MarR         MarR family
      0.056   13.3   0.0      0.089   12.7   0.0    1.3  1  TFIIE_alpha  TFIIE alpha subunit


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.5   0.2   8.1e-52   3.6e-48      10     291 ..      93     381 ..      88     384 .. 0.85

  Alignments for each domain:
  == domain 1  score: 164.5 bits;  conditional E-value: 8.1e-52
                 EEEEEEEETTS-EEEEEEEEEHCCHHCCHHHHHHHHHHCCCHCCH..TEEE.EEEEEESSEEETTCCEBSSGGCGCCCCTTHHHHHHHHHT..S-EEEE CS
         ROK  10 kialalvdeegeilarekvetptetteetlvdaiaelvdeaerka..deli.avgigspGlisdksgkivstpnitwenfdlvekleerln..vpveve 103
                  +++a v+  g +l+r+++++p++ ++      +a +v+e+++++  ++++ + g+++ G++++++g +   p  +w ++++ ++l+++l+  vp+ v 
  KIR63044.1  93 RLRAARVGLGGAVLDRRELDRPRNLVAGEAAPLLAGAVKEMHQSVpaGAVCvGAGVAVCGMVRRDDGLVRLSPTTGWVDEPIGAALAAELGidVPITVG 191
                 56778888899999*****999998765555555555555555431133444999*********************************98622688999 PP

                 EHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHHCHTC...CGTTS-HHH CS
         ROK 104 nDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqgClEtlasgralekraqq...kgekleake 199
                 n +  aa+aE+  g +++++nviy++   GvGaG+i +g+ +tG++G +ge+GH+ + + ge c CG++gC+Et + + +l ++a++   +g +  +  
  KIR63044.1 192 NVADVAAFAEHARGVAAGCDNVIYLYGDVGVGAGIIAGGRRLTGHGGYSGEVGHMVVVRGGEPCECGSRGCWETEIGEHGLLRAAGRsdaRGPD-AVLA 289
                 **************************************************************************************95432223.3456 PP

                 HHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHH.HHHHHHHHHCCTTTTCCCT-EEEE-S-STTHHHHHHHHHH CS
         ROK 200 iiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadkll.eairklvkkylnkklevpvveivaaklgdkagllGaaaLa 291
                 ++++a +gd  a+ +v++ +++l+ ++a+l+n+f+p+++++gG + +      +++r+ ++++ + + + ++v+++++klgd+a+l+Gaa La
  KIR63044.1 290 VFEAADRGDARAQTAVRQAGDWLGFGVANLVNIFNPEMVIFGGTMRDLYLAAaAQVRSRLNSMGLPA-CLEHVRLRTPKLGDDAALIGAAELA 381
                 79*****************************************998877666677777777766544.455559*****************98 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3   4.1e-06     0.018      10      62 .]      18      68 ..      15      68 .. 0.89
   2 ?   -2.0   0.0      0.78   3.5e+03      26      34 ..     177     185 ..     175     195 .. 0.80
   3 ?   -0.0   0.2      0.18   8.3e+02       7      40 ..     269     306 ..     265     310 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.1e-06
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                +L +++ ++    t +el+ +lgl +s++  + ++L  aGLv + +  e +Ra
  KIR63044.1 18 LLRYVHVHGA--TTRAELTTTLGLNRSTIGALTADLAGAGLVSEGAPKETGRA 68
                6777777776..799***************************99998888886 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.78
                 HHHHHHTSS CS
      MarR_2  26 elarrlgls 34 
                 +la++lg++
  KIR63044.1 177 ALAAELGID 185
                 699999998 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.18
                 HHHHHHHHHCTTTS....EEEHHHHHHHHTSSHHHHHH CS
      MarR_2   7 qarvLaaLgrrpgr....dltvgelarrlglsksavsr 40 
                 ++ +L a gr++ r     l+v e a+r +   +++ r
  KIR63044.1 269 EHGLLRAAGRSDARgpdaVLAVFEAADRGDARAQTAVR 306
                 77788888888888887666888888888877777766 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   6.6e-06      0.03       7      48 ..      17      58 ..      13      64 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.6e-06
                HHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  7 viLrilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                 +Lr ++ +g+ + +eL   lg+++st+  ++  L  +Gl++
  KIR63044.1 17 ALLRYVHVHGATTRAELTTTLGLNRSTIGALTADLAGAGLVS 58
                58999***********************************96 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     2e-05     0.089      15      80 ..      15      93 ..       8      97 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2e-05
                 HHHHHHHHHCTTSEBHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEEEEEE.............TTTEEEEEEEEEECCC CS
  TFIIE_alpha 15 avlvldvLlekgevteedlakelkidlnelrklLnrLyearlvkykrrrd.............eekswykyywrinyek 80
                     l  +  +g +t  +l   l++++  ++ l ++L +a+lv+    ++             e+  +y y + ++ ++
   KIR63044.1 15 LGALLRYVHVHGATTRAELTTTLGLNRSTIGALTADLAGAGLVSEGAPKEtgragrpslvvrpESERVYAYAYSVEVDR 93
                 5567888899**********************************98888877777777777777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2870.89
//
Query:       KIR63045.1  [L=419]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-42  144.1  49.0      1e-41  142.9  49.0    1.7  1  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.9  49.0   5.7e-46     1e-41       2     267 ..      65     402 ..      64     403 .. 0.94

  Alignments for each domain:
  == domain 1  score: 142.9 bits;  conditional E-value: 5.7e-46
  BPD_transp_2   2 ilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvgl 98 
                   ++nl t++a ++++A+Gl +v  ++G+i+l++g + +++a v a +++ l+ ++++a+l+al++g+++g +lg+lv++++++++++tl+++++++g+
    KIR63045.1  65 FANLFTQGAAITLIAMGLVFVL-LLGEIDLSAGFASGVCAAVLANVVTVLGYPWWVAVLAALVTGVLIGTALGFLVAKVGIPSFVVTLAGFLAFQGI 160
                   789*******************.****************88888888888888******************************************** PP

  BPD_transp_2  99 tlllltgitsgvkgqssvkellgf.agallsflsaviv........................................................... 135
                   +l+l++++ + + + ++ ++++    +  + ++ a+++                                                           
    KIR63045.1 161 VLMLMKEGANISVRDETLVAISNRnLPPAIGWALAAVAvagyaavqlmrhrnrsarglvtdplavvaarvgvlavilgvavyvlnlersrnvlitsl 257
                   ***************999988865367788888888888********************************************************** PP

  BPD_transp_2 136 .......llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAglaGallalllgsipp.nigvglgfnaiaavvlGg 224
                           ++++l+++ +++l+rt++Gr+++avg+n+eaar +Ginv+r+++ +fvi + +A++ G++ a + +s++p   g +  ++a+ a+v+Gg
    KIR63045.1 258 kgvpivvPIIAVLLIVWTFVLQRTSYGRHVYAVGGNKEAARRAGINVDRIRISVFVICSSMAAIGGIVAASRANSVDPnTGGSNVLLYAVGAAVIGG 354
                   *****9555555566666789*********************************************************6567889************ PP

  BPD_transp_2 225 a......gsllgtviGaliigvvksllltllgiptelarvllgallilv 267
                   +      g++l +v+G+ +++v+++ ++ l+g ++ +++v++g++l+l+
    KIR63045.1 355 TslfggkGRVLDAVLGGAVVAVIDN-GMGLMGYSSGVKYVVTGVVLLLA 402
                   *************************.77777888************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1147  (0.0639746); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 2931.34
//
Query:       KIR63046.1  [L=273]
Description: sugar ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-29  103.3   0.0    2.1e-29  102.8   0.0    1.2  1  ABC_tran     ABC transporter
      2e-10   41.0   0.2    0.00013   21.9   0.1    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    4.7e-07   29.5   0.3      0.016   14.6   0.1    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
    1.1e-06   28.5   0.2    4.9e-06   26.4   0.2    1.9  1  AAA_30       AAA domain
    0.00027   20.6   0.0    0.00059   19.5   0.0    1.6  1  AAA_29       P-loop containing region of AAA domain
    0.00033   21.2   0.0    0.00053   20.6   0.0    1.3  1  AAA_23       AAA domain
    0.00062   18.7   1.1        1.2    7.8   0.0    2.9  2  ABC_ATPase   Predicted ATPase of the ABC class
    0.00099   18.7   0.9      0.013   15.1   0.9    2.2  1  AAA_25       AAA domain
     0.0061   16.9   0.1      0.017   15.5   0.1    1.8  1  AAA_16       AAA ATPase domain
     0.0097   15.8   0.0      0.031   14.2   0.0    1.8  1  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.013   15.8   0.7       0.29   11.4   0.7    2.2  1  AAA_22       AAA domain
      0.035   13.8   0.0      0.052   13.3   0.0    1.2  1  AAA_15       AAA ATPase domain
      0.037   14.3   0.2       0.44   10.8   0.1    2.3  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
      0.044   12.7   0.0        2.4    7.0   0.0    2.1  2  AAA_10       AAA-like domain
      0.069   12.3   0.0       0.29   10.2   0.0    2.0  3  DUF815       Protein of unknown function (DUF815)
       0.15   12.1   0.0        0.3   11.1   0.0    1.4  1  TsaE         Threonylcarbamoyl adenosine biosynthesis protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.0   1.9e-32   2.1e-29       1     137 []      22     173 ..      22     173 .. 0.92

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 1.9e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................esd 82 
                 l++v l+ ++ge++a+vG+nGaGKStL+k+++g +  ++Ge l++g++++   ++  +   i+v+ q+  l ++l + +n                +++
  KIR63046.1  22 LRDVALTAHPGEVTALVGDNGAGKSTLVKCISGIYPIDSGEFLFEGRPVSInSPRDAAALGIEVVYQDLALCDNLDIVQNmflgrekhtglvldepTME 120
                 6899*********************************************998899999******************99999****99999999977777 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 + +++ l+ l+      + ++++ ssLSgGq+q va+a+a+l +++l++lDEpta
  KIR63046.1 121 QMAAETLAGLSVRT--VKSLRQHVSSLSGGQRQTVAIAKAVLWNSRLVILDEPTA 173
                 77888888877777..55555688*****************************97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   1.1e-07   0.00013       1      25 [.      34      58 ..      34      98 .. 0.76
   2 !   17.5   0.0   2.4e-06    0.0027     235     299 ..     143     204 ..      92     207 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.1e-07
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl 25
                +++l+G+Ng+GKS+L ++++++  +
  KIR63046.1 34 VTALVGDNGAGKSTLVKCISGIYPI 58
                69*****************999643 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 2.4e-06
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299
                 ++lS G+++  a++ a+l      +l+++DEp + L  + ++ +lel+++l++ng  v+l +H+ 
  KIR63046.1 143 SSLSGGQRQTVAIAKAVLWNS---RLVILDEPTAALGVAQTAQVLELVRRLADNGLAVVLISHNM 204
                 456*******99999999988...***************************************95 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0     4e-05     0.045      25      45 ..      33      53 ..      19      64 .. 0.86
   2 !   14.6   0.1   1.5e-05     0.016     134     213 ..     142     219 ..      79     225 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4e-05
                SEEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAil 45
                ++ta+vG NG+GKs l+  i+
  KIR63046.1 33 EVTALVGDNGAGKSTLVKCIS 53
                689*************99885 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.5e-05
                 TTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SS.HHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxx RF
       SMC_N 134 kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislr.eemlekadklvgvtk 213
                  ++LSgG+++ va+a          + l++lDe  aaL  +++++v el+++  +n   ++ is++ +++++ +d++  ++ 
  KIR63046.1 142 VSSLSGGQRQTVAIAKA----VLWNSRLVILDEPTAALGVAQTAQVLELVRRLADNgLAVVLISHNmNDVFAVSDRIAALYL 219
                 458*******9998754....4566779***********************9999977888889873456777787777665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.2   4.4e-09   4.9e-06      13     122 ..      27     200 ..      20     204 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 4.4e-09
      AAA_30  13 lltsgdrvavltGpAGtGKttalkalreaweaa.g......grviglAptgkaAkvLa.................................eelgieas 71 
                 l++++  v++l+G  G+GK+t++k +  ++  + g      ++v + +p  +aA  ++                                 +  +++a+
  KIR63046.1  27 LTAHPGEVTALVGDNGAGKSTLVKCISGIYPIDsGeflfegRPVSINSPRDAAALGIEvvyqdlalcdnldivqnmflgrekhtglvldepTMEQMAAE 125
                 5667778***********************999779****9*************999999999999999888888888888666666665523345777 PP

      AAA_30  72 tiakllkrlk....................grarlepgtllivDEagmv....dtkqlaallkaaekagakvilv 122
                 t+a l  r+                     ++a l++++l+i DE   +     t+q+ +l+++++++g  v+l+
  KIR63046.1 126 TLAGLSVRTVkslrqhvsslsggqrqtvaiAKAVLWNSRLVILDEPTAAlgvaQTAQVLELVRRLADNGLAVVLI 200
                 777766555567777778************77889999*******644443339999999999999999999887 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   5.3e-07   0.00059      17      40 ..      27      50 ..      20      56 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.3e-07
      AAA_29 17 ieidlkgatlltGpsGsGKSTllD 40
                ++ ++ ++t l+G++G+GKSTl+ 
  KIR63046.1 27 LTAHPGEVTALVGDNGAGKSTLVK 50
                55677779**************95 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   4.7e-07   0.00053      20      40 ..      33      53 ..      11      56 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4.7e-07
      AAA_23 20 gltlItGpNGaGKTTildAik 40
                 +t+++G+NGaGK+T++ +i 
  KIR63046.1 33 EVTALVGDNGAGKSTLVKCIS 53
                489****************96 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0011       1.2     245     269 ..      32      56 ..      26      68 .. 0.86
   2 !    6.9   0.2    0.0021       2.4     324     410 ..     146     216 ..     136     239 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
                 S.EEEEEE-TTSSHHHHHHHHHHCCS CS
  ABC_ATPase 245 G.vtlIvGggfhGKsTLLeAlekGvy 269
                 G vt++vG +  GKsTL++ ++ G+y
  KIR63046.1  32 GeVTALVGDNGAGKSTLVKCIS-GIY 56 
                 449****************995.777 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0021
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEE CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvil 410
                 SG   q ++i++a+  +++l+++DE t+A                ++     ++++vr+l +++g+ ++l++  ++d ++v+d++ +
  KIR63046.1 146 SGGQRQTVAIAKAVLWNSRLVILDEPTAALGVAQ-----------TA----QVLELVRRL-ADNGLAVVLISHNMNDVFAVSDRIAA 216
                 7888888888888888888888888888854322...........11....245677777.77788888888888888888888755 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.9   1.1e-05     0.013      32     188 ..      31     202 ..       7     206 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
      AAA_25  32 agelallaGapgtGKttlaldlalava..tGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvld..................... 107
                  ge+++l+G+ g+GK+tl+  ++  +   +G+ +l     e ++V + s   ++d  +  ++ v ++l++ ++l++++                     
  KIR63046.1  31 PGEVTALVGDNGAGKSTLVKCISGIYPidSGE-FLF----EGRPVSINS---PRDAAALGIEVVYQDLALCDNLDIVQnmflgrekhtglvldeptmeq 121
                 59****************99999888876777.444....566666666...55555666666677776666666666555555555555555555555 PP

      AAA_25 108 ..........lagv.eslpLfakdrggtlltadvdaleaaieev.egvrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188
                           + +v   ++      + + l +  ++  a +++v  + rlv++D  ++alg   +     ++++e ++r+a   g av+l+ H
  KIR63046.1 122 maaetlaglsVRTVkSLRQ------HVSSLSGGQRQTVAIAKAVlWNSRLVILDEPTAALGVAQT-----AQVLELVRRLA-DNGLAVVLISH 202
                 5555533322444422222......2222333334444444444223788888888888888655.....77777777774.66777777777 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.5e-05     0.017      24      86 ..      31      91 ..      19     200 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-05
      AAA_16 24 p.elvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqalareellrqll 86
                p e++ l+G+ G GKs+lv+++   +  d g f ++g+ ++   + p++a a  + +  ++++l+
  KIR63046.1 31 PgEVTALVGDNGAGKSTLVKCISGIYPIDSGEFlFEGRPVSI--NSPRDAAALGI-E-VVYQDLA 91
                238999****************98888887777677777777..66666666665.3.4444444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.7e-05     0.031      99     121 ..      32      54 ..      19      63 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.7e-05
                  TSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallp 121
                  +++++lvG  G+GKStL++ + +
   KIR63046.1  32 GEVTALVGDNGAGKSTLVKCISG 54 
                  589***************99875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.7   0.00026      0.29       6     128 ..      33     200 ..      29     206 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00026
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.............erpevvfvtlpsstsskdl.lrellralglelka.................... 70 
                  +++++G  G+GK+tl++ +   +++++   e             +             + + l  + + ++l l +++                    
  KIR63046.1  33 EVTALVGDNGAGKSTLVKCISGIYPIDSG--EflfegrpvsinspR-------------DAAALgIEVVYQDLAL-CDNldivqnmflgrekhtglvld 115
                 5789**************99888875422..134544444444442.............2222222222222221.11122222223333334466777 PP

      AAA_22  71 ...............erlsseellealeqalrarav...........ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                                +  + + l++++   +  ++             +l+i+DE    l    ++++le +r+l++    g++++L+
  KIR63046.1 116 eptmeqmaaetlaglSVRTVKSLRQHVSSLSGGQRQtvaiakavlwnSRLVILDEPTAaLGvaqTAQVLELVRRLAD---NGLAVVLI 200
                 77777777777777755555555555555555555566666667777778888887776645533777777777776...66666665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.6e-05     0.052      23      43 ..      33      52 ..      22      77 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.6e-05
      AAA_15 23 eeltvliGkNnsGKSsileal 43
                e +t l+G N++GKS++++ +
  KIR63046.1 33 E-VTALVGDNGAGKSTLVKCI 52
                3.9**************9988 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00039      0.44      24      89 ..     136     188 ..     118     189 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
     SbcCD_C  24 kelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 k+l++++++lSGG++q+   +a+a    a+++++       rlv+LDE  + l    +a++lel++
  KIR63046.1 136 KSLRQHVSSLSGGQRQT---VAIA---KAVLWNS-------RLVILDEPTAALGVAQTAQVLELVR 188
                 5699999********54...3444...4466663.......8999999999999999999999876 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0022       2.4      24      41 ..      35      52 ..      23      64 .. 0.88
   2 ?    3.7   0.0     0.021        24     243     287 ..     165     208 ..     153     240 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0022
      AAA_10 24 sliiGdlGnGKSvlakll 41
                ++++Gd G+GKS l+k +
  KIR63046.1 35 TALVGDNGAGKSTLVKCI 52
                699*************98 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.021
      AAA_10 243 vvifDEawiftssaeGkkllkelvRiGRsynaavylvtqsadDvl 287
                  vi+DE  +   +a+ +++l+ ++R    +  av+l++++++Dv 
  KIR63046.1 165 LVILDEPTAALGVAQTAQVLELVRR-LADNGLAVVLISHNMNDVF 208
                 6899999999999999999865555.55777889*********95 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00026      0.29      29      74 ..       8      53 ..       1      59 [. 0.76
   2 ?   -1.5   0.0         1   1.1e+03     187     246 ..      82     145 ..      79     149 .. 0.72
   3 ?   -3.1   0.0       3.2   3.5e+03      69      93 ..     182     205 ..     175     218 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00026
      DUF815 29 dLvgidkqkealventeqfleglpannvLLwGarGtGKSslvkall 74
                +L+gidk    ++      l+ +p +   L+G+ G+GKS+lvk + 
  KIR63046.1  8 ELRGIDKSFGPVQVLRDVALTAHPGEVTALVGDNGAGKSTLVKCIS 53
                66666666666666666667778888889**************875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1
      DUF815 187 GlwlgFykldqeeYleivekla....kklglelekeeleeeAlewalergsrsgRvArqfvkel 246
                 G+ + ++ l   + l+iv+++     k++gl l++ ++e+ A e  +  + r+ +  rq+v++l
  KIR63046.1  82 GIEVVYQDLALCDNLDIVQNMFlgreKHTGLVLDEPTMEQMAAETLAGLSVRTVKSLRQHVSSL 145
                 7888888888888899999988777777788888888888887766666666666666666655 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.2
      DUF815  69 lvkallneyaeegLrlievekedlk 93 
                  v  l++++a++gL+++ ++++ ++
  KIR63046.1 182 QVLELVRRLADNGLAVVLISHN-MN 205
                 5556677777777777776653.34 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00027       0.3      18      39 ..      29      52 ..      18      63 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00027
                H..TEEEEEEESTTSSHHHHHHHH CS
        TsaE 18 l..gdvilLeGdLGaGKTtlvrgl 39
                +  g+v +L Gd GaGK+tlv+ +
  KIR63046.1 29 AhpGEVTALVGDNGAGKSTLVKCI 52
                2347899**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2008.92
//
Query:       KIR63047.1  [L=159]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-28   97.3   0.5    7.3e-28   97.1   0.5    1.1  1  tRNA_edit  Aminoacyl-tRNA editing domain


Domain annotation for each model (and alignments):
>> tRNA_edit  Aminoacyl-tRNA editing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.5   4.1e-32   7.3e-28      10     122 ..      37     147 ..      27     148 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 4.1e-32
   tRNA_edit  10 laaalgvdpsaiaKtlvlkdkkgelvlvllpgdreldlkklakllgakklrlaseeelrellgvepGgvgPlglkaagvpvllDeslkeyptvvvgage 108
                 +aaalgv+p+++ K+lv ++ +g l+++++p + eldlk+la++lg+k++++a+ +  ++++g+++Gg++Plg   +++p++lD+s++ ++tv+v+ag+
  KIR63047.1  37 VAAALGVPPERVFKSLVTEV-DGALAVAVVPVTGELDLKALAAALGGKRATMADRAVAERATGYVRGGISPLGQ-RKRLPTVLDASALAHNTVYVSAGR 133
                 89*****************7.888*************************************************9.8*********************** PP

   tRNA_edit 109 ngatlelspedlrk 122
                 +g +l+l+p+dl+ 
  KIR63047.1 134 RGLQLQLAPADLVA 147
                 ***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1109.36
//
Query:       KIR63048.1  [L=415]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-23   83.0   5.1    4.6e-23   80.9   0.9    2.7  3  Thump_like       THUMP domain-like
    9.5e-07   29.4   0.6    2.4e-06   28.1   0.6    1.7  1  Methyltransf_11  Methyltransferase domain
    2.1e-06   28.4   0.7    6.3e-06   26.8   0.7    1.8  1  Methyltransf_25  Methyltransferase domain
    9.7e-05   22.2   0.0    0.00016   21.5   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    0.00071   19.3   0.0     0.0013   18.4   0.0    1.4  1  UPF0020          Putative RNA methylase family UPF0020
      0.001   18.6   4.1     0.0018   17.7   1.3    2.0  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0013   18.3   0.0     0.0018   17.9   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
  ------ inclusion threshold ------
      0.014   15.0   0.2      0.021   14.3   0.2    1.3  1  MTS              Methyltransferase small domain
      0.093   13.5   0.4       0.45   11.3   0.1    2.1  2  Methyltransf_12  Methyltransferase domain
       0.17   11.7   0.0       0.28   11.0   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
       0.23   10.7   0.0       0.32   10.2   0.0    1.1  1  CMAS             Mycolic acid cyclopropane synthetase
       0.49    9.8   2.1       0.82    9.1   2.1    1.3  1  SAM_MT           Putative SAM-dependent methyltransferase


Domain annotation for each model (and alignments):
>> Thump_like  THUMP domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         7     1e+04      47      68 ..       9      29 ..       7      36 .. 0.72
   2 ?    3.2   0.1     0.055        82      38      73 ..      50      85 ..      47      90 .. 0.84
   3 !   80.9   0.9   3.1e-26   4.6e-23       1      78 []     331     403 ..     331     403 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 7
  Thump_like 47 lklkdggraatLvlTrvgegka 68
                l++ dg+ aa   +T v  g++
  KIR63048.1  9 LRTPDGS-AALAAATEVAGGDP 29
                7777888.88888888865554 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.055
  Thump_like 38 ldpeeLrkklklkdggraatLvlTrvgegkagkava 73
                l+ +eLr++   k g+ aa  +lTr g ++a++ v+
  KIR63048.1 50 LTQAELRRRAVGKFGPAAAGMFLTRAGLEQATRGVV 85
                6789*******999999*********8888877766 PP

  == domain 3  score: 80.9 bits;  conditional E-value: 3.1e-26
  Thump_like   1 grafevlevlpfskkklkkllrergigkanikkRgfpldpeeLrkklklkdggraatLvlTrvgegkagkavallcer 78 
                 +r++ev++vlpfs k+l++llrer++g+++i+kRg +l pe Lr+ l+l  g++aa LvlTrv    ag++++l+c++
  KIR63048.1 331 ARCLEVTDVLPFSLKRLRALLRERRVGRVEILKRGSALEPERLRRDLRLA-GPEAASLVLTRV----AGAPTVLVCRP 403
                 69***********************************************9.999*********....9999*****97 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.6   1.6e-09   2.4e-06       2      67 ..     103     168 ..     102     171 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.6e-09
                      EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvs 67 
                      d+GcG G+ a a a++g rv+gv+ ++ + ++a ++a+ +gl   +++ ++da+   f  +s+D+ ++
       KIR63048.1 103 DLGCGLGADALAAARAGIRVYGVEADPVTAAMAAANAEAAGLadVFTVECGDATA--FDVSSVDAAFC 168
                      9****************************************99988899999997..99999***998 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.7   4.2e-09   6.3e-06       3      70 ..     103     168 ..     101     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 4.2e-09
                      EET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEE CS
  Methyltransf_25   3 dlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvs 70 
                      dlGcG G ++la+a+++   +v+gv+ ++   + a+++ae++gl   +++++gda++++   +s+D+ ++
       KIR63048.1 103 DLGCGLGADALAAARAG--IRVYGVEADPVTAAMAAANAEAAGLadVFTVECGDATAFDV--SSVDAAFC 168
                      9***************5..************************98888888899888765..47888887 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.1e-07   0.00016       7      81 ..     101     169 ..      98     199 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.1e-07
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsn 81 
                      + DlGCG G++++++a +   +++v+G++ ++     A +na+  gl   +++e gd+++++  ++  ++D  +++
       KIR63048.1 101 LADLGCGLGADALAAA-R--AGIRVYGVEADPVTAAMAAANAEAAGLAdVFTVECGDATAFD--VS--SVDAAFCD 169
                      67**************.4..5799***********************9889*********99..44..78888887 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   8.9e-07    0.0013      64     129 ..      99     170 ..      66     181 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.9e-07
                 S........HHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE-- CS
     UPF0020  64 e........lkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnp 129
                          l a a ++ara +++yg++ d+   + a  Nae+ag++d  ++++ da+++   + +vd+  ++p
  KIR63048.1  99 RtladlgcgLGADALAAARAGIRVYGVEADPVTAAMAAANAEAAGLADVFTVECGDATAFD-VS-SVDAAFCDP 170
                 14444454466777788889999*************************************9.55.8**999997 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   1.3   1.2e-06    0.0018     163     216 ..      99     151 ..      81     168 .. 0.83
   2 ?    1.2   0.1      0.13   1.9e+02     135     148 ..     256     269 ..     233     272 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.2e-06
        PrmA 163 eevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveakleva 216
                 +++ D+G+G G  a+aaa+ g  +v++v  D+v+  +a++Nae  ++++ ++v 
  KIR63048.1  99 RTLADLGCGLGADALAAARAGI-RVYGVEADPVTAAMAAANAEAAGLADVFTVE 151
                 5788***************995.7*******************99999988774 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.13
        PrmA 135 dpGlAFGTGtHpTT 148
                  pG A GTG+H   
  KIR63048.1 256 PPGNASGTGHHTSH 269
                 59*********865 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.2e-06    0.0018       3      61 ..     100     171 ..      98     195 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.2e-06
  Methyltransf_15   3 vilDlfsGaGGnviqfalvfekviaieinleklacaqhNaevYgvsdkitlvlgdvfe.............l 61 
                      ++ Dl +G G ++ + a+ + +v+++e ++ + a+a+ Nae+ g +d  t+ +gd +              +
       KIR63048.1 100 TLADLGCGLGADALAAARAGIRVYGVEADPVTAAMAAANAEAAGLADVFTVECGDATAfdvssvdaafcdpA 171
                      6789**********************************************9999987655555555555443 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   1.4e-05     0.021      29      88 ..      95     154 ..      66     177 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
                 CCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-S CS
         MTS  29 kelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasd 88 
                 ++  ++++DlGcG G+ ++a+a++   ++v  v++d    ++a +n+ea +l+   +v   d
  KIR63048.1  95 AAGVRTLADLGCGLGADALAAARA--GIRVYGVEADPVTAAMAAANAEAAGLAdvFTVECGD 154
                 4445679********988887775..5569******99999999**9999997533333333 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1    0.0003      0.45       2      69 ..     103     165 ..     102     171 .. 0.69
   2 ?   -1.0   0.0         2     3e+03      75      95 ..     333     353 ..     330     354 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0003
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDl 69 
                      ++GcG G+ + a +++  +i+++gv+ +p   + a++   + +  +  ++++e  d+   d  ss+D+
       KIR63048.1 103 DLGCGLGADALAAARA--GIRVYGVEADPVTAAMAAANAEAAGLAD--VFTVECGDATAFD-VSSVDA 165
                      89*****999999999..*******999988866666666655544..5555554443222.235665 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2
  Methyltransf_12  75 vlhhlkdirevldnirklLkp 95 
                      +l++++ + ++l+++r+lL+ 
       KIR63048.1 333 CLEVTDVLPFSLKRLRALLRE 353
                      789999999*********985 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00019      0.28      26      62 ..     101     149 ..      70     198 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
  Methyltransf_23  26 vLdiGcGtGillevlrengfsvtgvDlspeaveiae............k 62 
                      + d+GcG G  +  +++ g  v+gv+++p+  ++a+            +
       KIR63048.1 101 LADLGCGLGADALAAARAGIRVYGVEADPVTAAMAAanaeaagladvfT 149
                      559**************************98888766655555555551 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00022      0.32      56     124 ..      91     158 ..      73     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00022
                 TTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG- CS
        CMAS  56 eklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedl 124
                 ++l+     tl d+GcG G+ +  a++  +++v g+      a++a ++ ++++l++  +v+  d   +
  KIR63048.1  91 DRLRAAGVRTLADLGCGLGADALAAARA-GIRVYGVEADPVTAAMAAANAEAAGLADVFTVECGDATAF 158
                 556666667999**********999998.********99999999999999999999999987776655 PP

>> SAM_MT  Putative SAM-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.1   0.00055      0.82      63     108 ..      89     134 ..      68     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00055
      SAM_MT  63 kavglkkgvlptvlDaTaGlGrDafvlaslGckvtliErhpvvaaL 108
                 +a  l++    t+ D   GlG Da   a  G++v  +E +pv aa+
  KIR63048.1  89 RADRLRAAGVRTLADLGCGLGADALAAARAGIRVYGVEADPVTAAM 134
                 45556666678899*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3235.32
//
Query:       KIR63049.1  [L=548]
Description: molecular chaperone GroEL [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-92  309.0  12.6    8.5e-92  308.3  12.6    1.3  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.073   13.4   2.4       0.29   11.5   0.2    2.6  2  FlgM        Anti-sigma-28 factor, FlgM
       0.15   12.1   0.3       0.61   10.2   0.1    2.0  2  CbiA        CobQ/CobB/MinD/ParA nucleotide binding domain


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.3  12.6   1.4e-95   8.5e-92       1     490 [.      22     522 ..      22     523 .. 0.92

  Alignments for each domain:
  == domain 1  score: 308.3 bits;  conditional E-value: 1.4e-95
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHH....HHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPa....akllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegye 95 
                 lad+vk+tlGP+G++++l +k+g++++TnDG+ti+ke+e+++P+    a+l+ e+a+++++ +GDGTtt+++La+++++e+ + +aag+ p+ +++g++
  KIR63049.1  22 LADAVKVTLGPRGRNVVLDKKFGAPTITNDGVTIAKEIELTNPYenlgAQLVKEVATKTNDVAGDGTTTATVLAQAMVREGLRNVAAGASPSGLKRGID 120
                 79************************************************************************************************* PP

                 HHHHHHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCSEECSCCCEECCCCEECEC..TTSEEESEEEESS--SS CS
  Cpn60_TCP1  96 kalekaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAvklieenekeldlgrikvvkieggsl..edselveGlvldkgvls 192
                  a+ k+ eaL   ave+      +e++++va++s++          +++l+++A+           +gr +v+++e+gs   ++ ++ eGl++dkg++s
  KIR63049.1 121 AAATKVSEALLDRAVEVAG----KESIAHVATISAQDA-------TIGELIAEAM---------ERVGRDGVITVEEGSAltTELNVTEGLQFDKGFIS 199
                 **********777455554....59********99988.......8*********.........789************966666677*********** PP

                 T.......TSSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S-... CS
  Cpn60_TCP1 193 p.......dmpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrv... 281
                 p         +  le++++l+++++++  ++                        l++llek+ + ++++++++++++  al++l+ n ++   +v   
  KIR63049.1 200 PnfvtdveGQESVLEDPYILITTQKISGIEE------------------------LLPLLEKVLQNNKPLLIVAEDVEGQALSTLMVNAVRKTLKVcav 274
                 *5555443235555*****************........................******************************************** PP

                 ........-HHHHHHHHHHHT--EBSCG.....GGGGCGC-EEEEEEEECCETTCCEEEEE...................................CES CS
  Cpn60_TCP1 282 ........kkkdlerlakatGatavssl.....edltpeelGtakkveeekigsekttiie...................................evk 332
                         +k++l+++a++tG+++v+       +++  e lGta++v    + +e+tti++                                     +
  KIR63049.1 275 kapgfgdrRKAMLQDMAILTGSELVAPElgyklDQVGLEVLGTARRV---VVDKETTTIVDgggqasevadrvaqirkeieasdsdwdreklaerlAKL 370
                 *************************988777767777788*******...9999*******88888777777777777666666666555555544339 PP

                 SSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHH CS
  Cpn60_TCP1 333 sgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyaksvsgeeqlaieafakALevipktLaeNaGldpievlakl 431
                 sg+ia+i++++at+++++e++ +iedA+ ++k+a+e e+ vpGGGa++ ++   l +     +g+e+ ++ +++k+L ++++ +a+NaG+d+  v++k+
  KIR63049.1 371 SGGIAVIKVGAATEVEMKERKHRIEDAIAATKAAVE-EGTVPGGGAALAQILPVL-DDDLGFTGDEKTGVSIVRKSLVEPLRWIAQNAGHDGYVVVEKV 467
                 ************************************.******************.777779************************************* PP

                 HHHHHTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEXXX CS
  Cpn60_TCP1 432 raahnkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLrideiikak 490
                      +++   g+d++ g+++dl ++g++Dp+kv+r+a+++A+++a ++L+++  +++k
  KIR63049.1 468 VG---SQW-GQGLDAAVGDYVDLAKSGIIDPVKVTRNAVTNAASIAGLLLTTESLVVEK 522
                 99...666.88********************************************9998 PP

>> FlgM  Anti-sigma-28 factor, FlgM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   4.9e-05      0.29      23      54 ..     338     368 ..     325     369 .. 0.89
   2 ?    0.7   0.2      0.12   7.1e+02      27      41 ..     395     409 ..     380     411 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.9e-05
        FlgM  23 pevreekVaelKeaIasGtYqvdaekiAdkll 54 
                 +ev +++Va+++++I++   + d ek+A++l 
  KIR63049.1 338 SEV-ADRVAQIRKEIEASDSDWDREKLAERLA 368
                 454.89************************96 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.12
        FlgM  27 eekVaelKeaIasGt 41 
                 e+ +a+ K+a+++Gt
  KIR63049.1 395 EDAIAATKAAVEEGT 409
                 7899**********8 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1    0.0001      0.61      13     104 ..      88     272 ..      87     291 .. 0.89
   2 ?   -1.3   0.0      0.35   2.1e+03      54      95 ..     346     396 ..     308     426 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHHHHTT--EEEEEEEESSCCCCH.HTTEB-HHHH........................................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx........................................................ RF
        CbiA  13 TtlaanLaralarrglrVllvDaDpqannlai.leglendiep........................................................ 54 
                 Tt+a+ La+a+ r+glr ++  a p +    i +  ++    +                                                        
  KIR63049.1  88 TTTATVLAQAMVREGLRNVAAGASPSGLKRGIdAAATKVS--Ealldravevagkesiahvatisaqdatigeliaeamervgrdgvitveegsaltte 184
                 9******************999999977666543333333..2558889999*********************************************** PP

                 ..........................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHHHHHHHHHC CS
                 ..........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ..........................................dlkrllellealgkkkalllkiagvvlnrvdgeneetllkealeelkqry 104
                                                           +++ ll lle++ ++     k++ +v+  v+g++ +tl+ +a++++++ +
  KIR63049.1 185 lnvteglqfdkgfispnfvtdvegqesvledpyilittqkisGIEELLPLLEKVLQN----NKPLLIVAEDVEGQALSTLMVNAVRKTLKVC 272
                 ***************************************999999999999999988....689*****************99999988655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.35
                 H............CCHCCCHHHHHHCHCHHHH..EEEEE.EEEESS...-TTCHH CS
                 x............xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
        CbiA  54 p............dlkrllellealgkkkalllkiagvv.lnrvdgeneetllke 95 
                 +            d+++l e l++l+++    + ++ v+ ++ v+ +++++++++
  KIR63049.1 346 QirkeieasdsdwDREKLAERLAKLSGG----IAVIKVGaATEVEMKERKHRIED 396
                 1333345566777788888888888877....34444431344444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 4061.62
//
Query:       KIR63050.1  [L=534]
Description: molybdopterin-binding oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-39  133.4   0.0      9e-39  132.8   0.0    1.2  1  Oxidored_molyb  Oxidoreductase molybdopterin binding domain
    9.6e-07   29.5   0.3      4e-06   27.5   0.0    2.1  2  Big_7           Bacterial Ig domain
     0.0037   17.3   1.2       0.01   15.9   1.2    1.7  1  Mo-co_dimer     Mo-co oxidoreductase dimerisation domain
  ------ inclusion threshold ------
      0.033   14.5   0.5      0.061   13.6   0.5    1.4  1  CBM_6           Carbohydrate binding module (family 6)
      0.064   13.0   0.0      0.099   12.4   0.0    1.2  1  SoxZ            Sulphur oxidation protein SoxZ
          3    7.5  14.6         62    3.2   0.0    3.3  3  DUF4131         Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.8   0.0     3e-42     9e-39       3     167 ..     261     407 ..     259     413 .. 0.91

  Alignments for each domain:
  == domain 1  score: 132.8 bits;  conditional E-value: 3e-42
                     ----.GCCC-EEEEESTCSSEEEEEHHHHHHC-EEEEEEEEE-TTTTHHHHCHH--SS----TTSEEEEEEEEEEHHHHHHHTTB-ETT..EEEE CS
  Oxidored_molyb   3 avpkvdpekwrlevdglvekplslslddLkalpavevtatlqCagnrrkelnkkkvkglqwgagavsnaeWtGvrlrdvLekagvkkpearhvvf 97 
                      vp+vdp++wrl+++g v++p++ls++dL a p ve+ +tl+C++n             ++g   ++na+W Gv++r++L++a+++ + a +vv 
      KIR63050.1 261 VVPQVDPDTWRLRIHGRVRNPIELSFADLLARPMVERYVTLACVSN-------------EVGGDLIGNARWLGVPIRELLDEAQPE-EGADQVVG 341
                     6999*****************************************9.............778888********************7.9******* PP

                     EEEEE-TCCTEEEEEEEHHHHCTT.T-EEEEEETTEE--CCCTTT-EEE-TTB-GGGSB.TTEEEEEEESS- CS
  Oxidored_molyb  98 egadeeleeskygasiplekaled.dvlLAyemngepLppdhGyPlRlvvpglvgarsv.Kwlkrievsdee 167
                     ++ d       ++   p + + +  d+lLA+ mngepLp++hG+P+R+vvpgl+g+ s+ Kw++++e+++ +
      KIR63050.1 342 RSVDG------WTCGTPTAALRDGrDALLAVGMNGEPLPVEHGFPVRMVVPGLYGYVSAcKWVTELELTSFA 407
                     ***95......888888888874369*******************************999*******98765 PP

>> Big_7  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.3e-09     4e-06       4      70 .]     429     501 ..     427     501 .. 0.92
   2 ?   -1.1   0.0       1.1   3.3e+03      57      70 .]     519     531 ..     504     531 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.3e-09
                 EEEE--TT--EBTSEEEEEEEEE-S.S-EEEEEEEETTEE.........EEEE-SSSEEEEEE--...SEEEEEEE CS
       Big_7   4 titsPangatvsggtvtisasAsdd.ggvskVefyvdgtlg........lgtdtsapysltwtttaltagthtltV 70 
                  i++P + + +++g+v + + A  +  g+ +Ve++vd+ ++        ++ dt   +s++w +t   +g+htl+V
  KIR63050.1 429 RIDTPRPRNRLTAGPVMVAGVAWAQhRGIRRVEVRVDDGPWreatlaptVSVDTWVQWSWQWAAT---SGEHTLQV 501
                 699****************99988889************9559**999999999999******98...9*****98 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.1
                 E--...SEEEEEEE CS
       Big_7  57 tttaltagthtltV 70 
                 +++ +++g+ht++V
  KIR63050.1 519 DPD-GATGWHTVRV 531
                 554.789****998 PP

>> Mo-co_dimer  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.2   3.4e-06      0.01       7     117 ..     424     514 ..     419     533 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.4e-06
                  ---EEEE-SS-SEEEE-S....EEEEEEEEEE-STT--EEEEEEESSTTSS-EE-EEESSSSS---..SSTTS-TTS-EEEEEEEEESS...E.EEEE CS
  Mo-co_dimer   7 lnvnsvicspeheekvklkeaeetytikGyaysGgGrritrvevsldkGksWklaeieyeedkereakeesretafcwvfweldvevselakekeilv 104
                  ++++s i +p++ ++++     +++ + G a++   r i rvev +d+G  W+ a++  +             ++ +wv w+ +     +  e+ ++v
   KIR63050.1 424 IKTQSRIDTPRPRNRLTA----GPVMVAGVAWAQ-HRGIRRVEVRVDDG-PWREATLAPTV------------SVDTWVQWSWQWAA--TSGEHTLQV 501
                  578999999999999988....57********96.589***********.5****998762............24478888765444..446778889 PP

                  EEEETT--B--SH CS
  Mo-co_dimer 105 ravDealnvqPee 117
                  ra D    +q e+
   KIR63050.1 502 RATDADGETQTER 514
                  9999888888764 PP

>> CBM_6  Carbohydrate binding module (family 6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.5     2e-05     0.061      54     111 ..     452     506 ..     440     513 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
                 EESSSEEEEEEEESSTTSSEEEEEEE---SSTTEEEEEEEEEEE-SEEEEEEEEEECS CS
       CBM_6  54 asgaaggsielrldsatgtlvgtvsvpstggwqtyvtvsanvtlptGvhdlylvftgg 111
                 a+  +  ++e+r+d+  g++   +++++t +++t+v+ s +  +++G+h+l++++t  
  KIR63050.1 452 AQHRGIRRVEVRVDD--GPWR-EATLAPTVSVDTWVQWSWQWAATSGEHTLQVRATDA 506
                 3444449********..6665.556999*************************99975 PP

>> SoxZ  Sulphur oxidation protein SoxZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.3e-05     0.099      39      94 ..     457     514 ..     450     516 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.3e-05
                 EEEEEEEETTEEEEEE---SS--SS-EEEEEEE...--S-EEEEEEEEETTS-EEEEE CS
        SoxZ  39 IqevevtlngkevleaelgiaiSknPylrfkfkg..akkgdtlkvtwtDnkgesfsae 94 
                 I++vev++++ +  ea+l +++S +  ++ + +    + + tl+v++tD +ge+++++
  KIR63050.1 457 IRRVEVRVDDGPWREATLAPTVSVDTWVQWSWQWaaTSGEHTLQVRATDADGETQTER 514
                 99**************************99998753455679************9975 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7  11.2     0.058   1.7e+02       9      54 ..      70     114 ..      66     128 .. 0.51
   2 ?    1.9   0.1     0.051   1.5e+02       8      44 ..     125     198 ..     118     221 .. 0.58
   3 ?    3.2   0.0     0.021        62      27      55 ..     432     460 ..     410     477 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.058
     DUF4131   9 llalllllllllllllrrrprrrvllllllllllallgfalrapqp 54 
                 l++++lll+ +++ll      rr +l+l+ + ++a+lg+a+   ++
  KIR63050.1  70 LVGTALLLAGFAALLGV-LAARRLWLGLAGIGAFAALGVAAALTRA 114
                 45555555555555544.4445555555555555555554444444 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.051
     DUF4131   8 vllalllllllllllllrr........................................rprrrvllllllllllal 44 
                 ++ a+l++l+l+lll                                              rrr+l+++++l+ +a+
  KIR63050.1 125 LAGAALGALTLWLLL---AgplhpdpwpwtpptaaagkegplvdiplstrgpslhperpEGRRRFLTGVGALAGAAV 198
                 333333333333333...13456667777777777777777777777777777777766455555555555544444 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.021
     DUF4131  27 rprrrvllllllllllallgfalrapqpn 55 
                  pr+r  l+++ +++++++++++r  ++ 
  KIR63050.1 432 TPRPRNRLTAGPVMVAGVAWAQHRGIRRV 460
                 79**********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3836.89
//
Query:       KIR63051.1  [L=273]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-19   68.5   0.0    4.7e-19   67.7   0.0    1.3  1  GerE           Bacterial regulatory proteins, luxR family
    4.6e-05   23.0   0.1    0.00012   21.7   0.1    1.7  1  Sigma70_r4_2   Sigma-70, region 4
    0.00013   21.4   0.1    0.00083   18.8   0.2    2.2  2  Sigma70_r4     Sigma-70, region 4
     0.0012   18.6   0.1     0.0049   16.6   0.1    2.1  1  HTH_23         Homeodomain-like domain
     0.0099   15.6   0.1      0.018   14.8   0.1    1.4  1  HTH_38         Helix-turn-helix domain
  ------ inclusion threshold ------
      0.016   15.0   0.5       0.24   11.3   0.0    2.9  3  HTH_AsnC-type  AsnC-type helix-turn-helix domain
      0.029   14.5   0.0      0.041   14.1   0.0    1.2  1  Response_reg   Response regulator receiver domain
       0.17   12.4   1.1       0.22   12.0   0.3    1.7  2  CoA_binding_2  CoA binding domain


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   2.1e-22   4.7e-19       3      54 ..     212     263 ..     211     265 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 2.1e-22
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelv 54 
                 L++RE++vL  +aeGksn eI++el++Se TVk+h +++++KL++++r+++v
  KIR63051.1 212 LTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAV 263
                 9*************************************************98 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   5.2e-08   0.00012      11      54 .]     212     254 ..     211     254 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 5.2e-08
                   S-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  11 LperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   L+er+ +++l    eg+s +EI ++l +se tVk++ +R  +kL
    KIR63051.1 212 LTERELQVLLG-MAEGKSNAEIGRELFVSEDTVKTHARRLFRKL 254
                   67777788888.78*************************88887 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.44   9.9e+02      10      33 ..       2      27 ..       1      29 [. 0.79
   2 !   18.8   0.2   3.7e-07   0.00083       5      48 ..     212     254 ..     211     256 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.44
                HHHHHHHH..TTT--HHHHHHHHTS- CS
  Sigma70_r4 10 revlelrf..geglTleEIgerlgiS 33
                r+vl++++  +  + l   ++rlg+S
  KIR63051.1  2 RTVLVCVRtpLAAQQLNSAAARLGLS 27
                677777777777778889999**999 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 3.7e-07
                 S-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   5 LpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 L+ere +vl    +   + +EIg++l +S+ +V+ + +r +rkL
  KIR63051.1 212 LTERELQVLLGMAEG-KSNAEIGRELFVSEDTVKTHARRLFRKL 254
                 899999999877655.59*************************9 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   2.2e-06    0.0049       7      45 ..     216     255 ..     213     263 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.2e-06
      HTH_23   7 RlrillllaeGlsvreIAreLgvsrrTvy.rwlkryreeG 45 
                  l++ll  aeG+s +eI reL vs+ Tv  + ++ +r+ G
  KIR63051.1 216 ELQVLLGMAEGKSNAEIGRELFVSEDTVKtHARRLFRKLG 255
                 5788888999*******************88899998766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   7.9e-06     0.018       7      43 ..     212     249 ..     207     250 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.9e-06
      HTH_38   7 leeReeIerll..aeGlslreIArrLgrspsTIsRElkR 43 
                 l+eR e++ ll  aeG+s++eI+r+L +s  T+  + +R
  KIR63051.1 212 LTER-ELQVLLgmAEGKSNAEIGRELFVSEDTVKTHARR 249
                 6777.777776669****************999776655 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.51   1.2e+03      24      32 ..      21      29 ..      18      34 .. 0.88
   2 ?   -0.8   0.1      0.62   1.4e+03      25      39 ..      30      44 ..      26      45 .. 0.82
   3 ?   11.3   0.0   0.00011      0.24      19      41 ..     228     250 ..     227     250 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.51
  HTH_AsnC-type 24 AervGlSes 32
                   A+r+GlS++
     KIR63051.1 21 AARLGLSAA 29
                   899****85 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.62
  HTH_AsnC-type 25 ervGlSestvlrRvr 39
                    r+ +S ++v+ R++
     KIR63051.1 30 VRTAVSDPEVMLRLA 44
                   57889*****99975 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00011
  HTH_AsnC-type  19 syaeLAervGlSestvlrRvrrL 41 
                    s+ae+++++ +Se+tv    rrL
     KIR63051.1 228 SNAEIGRELFVSEDTVKTHARRL 250
                    9***************8777776 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.8e-05     0.041       8      98 ..      11     101 ..       4     112 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-05
                   HHHHHHHHHHHHHTTE.EEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEEE CS
  Response_reg   8 plvrellrqlleeegy.eevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddfl 98 
                   pl+++ l+++  + g+   v++a +  e++  l e   d++l D  + + d   +++++ ++ p+  v++l a+++ e a + + aga + +
    KIR63051.1  11 PLAAQQLNSAAARLGLsAAVRTAVSDPEVMLRLAEIPADVVLADTALTRPDSAGFVRRVLARAPQAAVLLLGAEES-EAAAATIGAGARGLI 101
                   5566666666666666335778888889999999999***********************************8886.888899999999988 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   9.9e-05      0.22      44     104 ..      38      98 ..       5     103 .. 0.87
   2 ?   -3.7   0.0       7.7   1.7e+04      29      41 ..     173     185 ..     172     188 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.9e-05
                    ES----T....T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT---HHHHHHHHHTT-E CS
  CoA_binding_2  44 kvyaslaedpepvdlvdvftppeatpeivkealalgakavwlqpgsedeeaaelaeeagir 104
                    +v  +lae p +v l+d ++ + + +  v+ +la+ ++a++l +g+e+ eaa++   ag r
     KIR63051.1  38 EVMLRLAEIPADVVLADTALTRPDSAGFVRRVLARAPQAAVLLLGAEESEAAAATIGAGAR 98 
                    56667887579999*************************************9998877765 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.7
                    -EEEESSS-SEET CS
  CoA_binding_2  29 pvvpVnpkeeeil 41 
                    pvvpV+   +e++
     KIR63051.1 173 PVVPVQRGDDEVE 185
                    7999999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2075.07
//
Query:       KIR63052.1  [L=134]
Description: hypothetical protein TK50_19330 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-49  166.6   1.8    2.7e-49  166.4   1.8    1.0  1  DUF5319   Family of unknown function (DUF5319)


Domain annotation for each model (and alignments):
>> DUF5319  Family of unknown function (DUF5319)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   1.8   1.5e-53   2.7e-49       4     120 ..       3     122 ..       1     123 [. 0.96

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 1.5e-53
     DUF5319   4 elPrdPfaddPndPasfleee...eeleplseeereevledLadveefkalLeprGirGivllCedCeeehyydWdllaanlkalledelarvhePaad 99 
                 + P dPf++dP dPa++l++    ++l+pl+e er++vledLad+e ++alL+p G+rG+v+ CedC e+hy+dWdll+ nl++ll+++++rvhePa+d
  KIR63052.1   3 DEPIDPFNGDPADPAAELHDPaddDTLDPLTEVERQDVLEDLADLEIYQALLAPVGVRGLVIECEDCREPHYFDWDLLRGNLRHLLSSGRPRVHEPAYD 101
                 67****************986555799************************************************************************ PP

     DUF5319 100 pdpeayvsWdyalGyldglee 120
                 pdp++yv+Wdya+Gy+dg+++
  KIR63052.1 102 PDPDHYVTWDYARGYADGVHD 122
                 ******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 955.10
//
Query:       KIR63053.1  [L=520]
Description: inosine-5-monophosphate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     6e-159  528.6   5.5   6.9e-159  528.4   5.5    1.0  1  IMPDH          IMP dehydrogenase / GMP reductase domain
    3.6e-19   68.9   2.1    2.8e-09   37.3   0.2    2.8  2  CBS            CBS domain
    1.2e-10   41.4   8.9      1e-06   28.4   8.1    2.2  2  NMO            Nitronate monooxygenase
    2.3e-05   24.0   3.9      0.054   12.9   0.1    2.4  2  His_biosynth   Histidine biosynthesis protein
    3.6e-05   22.9  13.5    3.6e-05   22.9  13.5    2.8  4  FMN_dh         FMN-dependent dehydrogenase
  ------ inclusion threshold ------
      0.018   14.2  10.7      0.016   14.3   9.5    1.5  1  Glu_synthase   Conserved region in glutamate synthase
      0.068   13.7   0.7       0.25   11.8   0.6    2.0  2  CoA_binding_2  CoA binding domain
      0.082   12.5   0.1       0.26   10.9   0.1    1.9  1  DUF374         Domain of unknown function (DUF374)
      0.098   11.9  10.4       0.17   11.2   4.5    2.7  2  ThiG           Thiazole biosynthesis protein ThiG
        0.1   12.1   5.1      0.034   13.6   1.8    1.9  2  PEP_mutase     Phosphoenolpyruvate phosphomutase
       0.32   11.5   2.8        1.3    9.5   2.8    2.1  1  NAD_binding_7  Putative NAD(P)-binding
        0.6    9.3   6.2        1.7    7.8   0.7    3.0  3  NanE           Putative N-acetylmannosamine-6-phosphate epime
        1.6    7.9   7.5       0.28   10.4   1.5    2.1  2  DHO_dh         Dihydroorotate dehydrogenase


Domain annotation for each model (and alignments):
>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  528.4   5.5    5e-162  6.9e-159       1     345 []      36     506 ..      36     506 .. 0.98

  Alignments for each domain:
  == domain 1  score: 528.4 bits;  conditional E-value: 5e-162
                 E--GGGEEEE---B-S-GGGSB--EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHHHHHHHHHTS................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
       IMPDH   1 gltfddvllvpaksevlpkevdlktkltkkiklniPlvsaamdtvtesemAialareGgigvihknlsieeqaeevkkvkrs................. 82 
                 gltfddvll p++s+v+p++v+++t+lt++++l++Pl+s+amdtvte++mAia+ar+Ggigv+h+nls e+qa +v+ vkrs                 
  KIR63053.1  36 GLTFDDVLLQPGESDVVPSRVNTRTRLTRNVELTVPLLSSAMDTVTEARMAIAMARQGGIGVLHRNLSLEDQALQVDLVKRSesgmitnpvtaspddtl 134
                 79************************************************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       IMPDH  83 ................................................................................................... 82 
                                                                                                                    
  KIR63053.1 135 rdvdalcgryrisgvpvvdgegqlvgivtnrdmrfvsepatpvreimtrtplvtapvgvskdealallrqhkveklpivdgsgrlrglitvkdftkseq 233
                 *************************************************************************************************** PP

                 .TTSXBXTTSXB-EEEEE-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-STTB CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  83 .pnaakdekgrllvgaavgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpGsiC 180
                  pna+kd+ grl+v+aavgv eda +r++alv+agvdv++vd+ahgh++ vl++v+++kk+v ++++++Gnvat++gakaL+eagad+vkvG+GpG+iC
  KIR63053.1 234 yPNATKDDAGRLRVAAAVGVGEDAYKRARALVDAGVDVIIVDTAHGHQRAVLDMVRQLKKDV-TIDIVGGNVATYAGAKALVEAGADGVKVGVGPGAIC 331
                 **************************************************************.7*********************************** PP

                 HHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEEEEETTEEEEEEEETTSHHHHHH....-..S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x..x RF
       IMPDH 181 ttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagteEspgeviliegrkyKeyrGmgslgamkk....g..s 273
                 ttr+vagvGvpq+tA++e+a+aa+ agvpvi DGGi+ysgdi+kAl+aGad+vmlGsllag+eEspge+i+i+g++yK+yrGmgslgam++    +  s
  KIR63053.1 332 TTRIVAGVGVPQITAIMEAARAARPAGVPVIGDGGIQYSGDIAKALVAGADTVMLGSLLAGCEESPGELIFINGKQYKAYRGMGSLGAMQSrgqaKsyS 430
                 *****************************************************************************************6555551569 PP

                 S-TTS-......--SS-SBEEEEEE--B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHHH-EEEEE-HHHHHHHS-- CS
                 xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 274 kdryfqk....keklvpeGvegrvpykgsvkevveqlvgglrsgmgylGaktieelkekakfvritaaglkeshvH 345
                 kdryfq+    ++klvpeGveg+vpy+g++++v +ql+gglr++mgy+Ga++i el+++ +++ritaaglkesh+H
  KIR63053.1 431 KDRYFQQdvlaEDKLVPEGVEGQVPYRGPLAAVAHQLIGGLRAAMGYVGAESIPELHRRGQLIRITAAGLKESHPH 506
                 9****94344455**************************************************************9 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.2     2e-12   2.8e-09       5      52 ..     121     168 ..     112     171 .. 0.94
   2 !   30.3   0.1     3e-10   4.1e-07       1      52 [.     177     229 ..     177     233 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 2e-12
                 SBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHH CS
         CBS   5 mtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDll 52 
                 m +++vt++pd+tl+++  l  ++++s++PVVd++g+lvGivt rD  
  KIR63053.1 121 MITNPVTASPDDTLRDVDALCGRYRISGVPVVDGEGQLVGIVTNRDMR 168
                 889******************9999********************975 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 3e-10
                 HHHHSBS.SCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHH CS
         CBS   1 Vgdimtr.dvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDll 52 
                 V++imtr ++vt+p   +  eal l+r+++v  lP+Vd++g+l G++t +D  
  KIR63053.1 177 VREIMTRtPLVTAPVGVSKDEALALLRQHKVEKLPIVDGSGRLRGLITVKDFT 229
                 899*9998999***************9999*********************75 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   9.8e-05      0.14       2      41 ..      60      99 ..      59     119 .. 0.84
   2 !   28.4   8.1   7.5e-10     1e-06      82     232 ..     237     397 ..     222     404 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.8e-05
         NMO  2 slltellkikppvvqpgmggiskarLaaavsnaGgLGvla 41
                ++lt  ++   p+  + m  +++ar+a a + +Gg+Gvl 
  KIR63053.1 60 TRLTRNVELTVPLLSSAMDTVTEARMAIAMARQGGIGVLH 99
                567777888999**************************96 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 7.5e-10
         NMO  82 kykkeleeaalelnieegvrfyrkvevvldekvevvsfgfglpteevv....arlkeagv..vliptissvkearkvearGaDalivqGpeaGGhqGtp 174
                   k++ +   + +++ +g   y++   + d +v+v+++  +   + +v     +lk+  +  ++ + +++   a+++ ++GaD + v G   G    t+
  KIR63053.1 237 ATKDDAGRLRVAAAVGVGEDAYKRARALVDAGVDVIIVDTAHGHQRAVldmvRQLKKDVTidIVGGNVATYAGAKALVEAGADGVKV-GVGPGAICTTR 334
                 45666666677777788888999*99999****999999888777554222255555544125566899999***********9765.77778877788 PP

         NMO 175 evgdkglfaLvpqvldavd.....iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesd 232
                  v+++g  ++ + +  a +     +Pvi  GGi    ++a aL +GA  v +g+ + +++es+
  KIR63053.1 335 IVAGVGVPQITAIMEAARAarpagVPVIGDGGIQYSGDIAKALVAGADTVMLGSLLAGCEESP 397
                 8888998888888888877889***************************************97 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   1.3   0.00015       0.2      29     102 ..     255     324 ..     250     339 .. 0.82
   2 !   12.9   0.1   3.9e-05     0.054      67     106 ..     352     391 ..     338     407 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
                   TSHHHHHHHHHHHT-SEEEEEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEES CS
  His_biosynth  29 gdpvelakryeeegadelhvvDldaakegreanldlveeiaeevfipvqvGGGIrsledveelleagadkviig 102
                   +d ++ a+++ ++g+d ++ vD   a+ +++a ld+v+++ + v+i++ vGG + ++  +++l+eagad v +g
    KIR63053.1 255 EDAYKRARALVDAGVDVII-VD--TAHGHQRAVLDMVRQLKKDVTIDI-VGGNVATYAGAKALVEAGADGVKVG 324
                   5677778888888888665.45..58999999***********88887.7888****************66554 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.9e-05
                   HHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHH CS
  His_biosynth  67 eiaeevfipvqvGGGIrsledveelleagadkviigtaav 106
                   + a+   +pv  +GGI+   d++++l agad v++g+  +
    KIR63053.1 352 RAARPAGVPVIGDGGIQYSGDIAKALVAGADTVMLGSLLA 391
                   34445569999*************************9865 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.8   3.9e+03      58      70 ..     183     195 ..     179     214 .. 0.84
   2 ?    1.6   0.5     0.081   1.1e+02     229     250 ..     260     281 ..     251     286 .. 0.88
   3 !   22.9  13.5   2.6e-08   3.6e-05     206     301 ..     286     388 ..     280     394 .. 0.84
   4 ?   -2.3   0.0       1.2   1.7e+03     318     343 ..     463     488 ..     460     490 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.8
                 SSSEEE--BSTGG CS
      FMN_dh  58 slPvliaPvglak 70 
                 ++P+++aPvg++k
  KIR63053.1 183 RTPLVTAPVGVSK 195
                 6899*****9976 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.081
                 HHHHHHHTTESEEEE--GGGTS CS
      FMN_dh 229 dakraveaGvdgivvSNHGGRq 250
                  a+ +v+aGvd i+v    G+q
  KIR63053.1 260 RARALVDAGVDVIIVDTAHGHQ 281
                 58999**********9999988 PP

  == domain 3  score: 22.9 bits;  conditional E-value: 2.6e-08
                 HHHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGG.....TSSTT-.--HHHCHHHHHHHH...SS-EEEESS--SHHHHHHHHHTT-SEE CS
      FMN_dh 206 ddikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGG.....Rqldga.patidvLpeiveavgg.rievlvDgGirrGsDvlkAlalGAdav 297
                 d +++l++ + + +v   v t + ak +veaG+dg+ v    G     R + g+ ++ i ++ e ++a++   ++v+ DgGi+   D++kAl  GAd v
  KIR63053.1 286 DMVRQLKKDVTIDIVGGNVATYAGAKALVEAGADGVKVGVGPGaicttRIVAGVgVPQITAIMEAARAARPaGVPVIGDGGIQYSGDIAKALVAGADTV 384
                 557788888888888888999*****************99888788887777653566888888888887636************************** PP

                 EESH CS
      FMN_dh 298 llGR 301
                 +lG 
  KIR63053.1 385 MLGS 388
                 **95 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHT-SBHHHHHC CS
      FMN_dh 318 vleilraelertmallGvksvaeldr 343
                 v + l   l+++m  +G++s+ el+r
  KIR63053.1 463 VAHQLIGGLRAAMGYVGAESIPELHR 488
                 6677778899***********99987 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   9.5   1.2e-05     0.016     202     304 ..     291     388 ..     276     395 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
                   TTSEEEEEEE-STTHHHHHHH.HHHTT-SEEEEE-TT---SSE.EHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT CS
  Glu_synthase 202 keakvsvKlvaeagvetiaag.vakanadiilidGleGGTGAs.pkssikhaGlPlelalaevdqtlkeeglrdrvsliadGglktgadvvkalalG 296
                    ++ v++ +v ++++    a  +++a+ad +++     G GA   + ++  +G+P ++a+ e+ ++ +  g    v +i dGg++ + d++kal+ G
    KIR63053.1 291 LKKDVTIDIVGGNVATYAGAKaLVEAGADGVKVG---VGPGAIcTTRIVAGVGVPQITAIMEAARAARPAG----VPVIGDGGIQYSGDIAKALVAG 380
                   4678889999888876554333899999999983...36777515678899*************9988876....89******************** PP

                   -SEEE-SH CS
  Glu_synthase 297 Adavgigt 304
                   Ad+v +g+
    KIR63053.1 381 ADTVMLGS 388
                   *****997 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       8.1   1.1e+04      89     106 ..      81      98 ..      37     101 .. 0.64
   2 ?   11.8   0.6   0.00018      0.25      14     111 ..     255     367 ..     247     372 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 8.1
                    ---HHHHHHHHHTT-EEE CS
  CoA_binding_2  89 sedeeaaelaeeagirvv 106
                    +e + a+++a++ gi v+
     KIR63053.1  81 TEARMAIAMARQGGIGVL 98 
                    455666777777777665 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00018
                    SHHHHHHHHHHHHT--EEEESSS-.SEETTEES----T....T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT................---H CS
  CoA_binding_2  14 kfgykvlryllehglpvvpVnpke.eeilgekvyaslaedpepvdlvdvftppeatpeivkealalgakavwlqpg................sede 92 
                      +yk +r l+++g++v+ V   + ++    + +++l++d  ++d+v   +   a ++ + ea+a g+k+ +  pg                +   
     KIR63053.1 255 EDAYKRARALVDAGVDVIIVDTAHgHQRAVLDMVRQLKKD-VTIDIVGGNVATYAGAKALVEAGADGVKVGVG-PGaicttrivagvgvpqiTAIM 348
                    679999**************88774344445689999965.88888888888788888888888887654443.335777779999999999999* PP

                    HHHHHHHHTT-EEE.ES-H CS
  CoA_binding_2  93 eaaelaeeagirvvgdrCi 111
                    eaa++a+ ag++v+gd+ i
     KIR63053.1 349 EAARAARPAGVPVIGDGGI 367
                    **************99865 PP

>> DUF374  Domain of unknown function (DUF374)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00019      0.26      17      56 ..     256     295 ..     243     300 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
      DUF374  17 DGeliarvlerlGiktirGSsskggaealremlralkege 56 
                 D+   ar+l   G+++i   +++g+ +a+++m+r+lk++ 
  KIR63053.1 256 DAYKRARALVDAGVDVIIVDTAHGHQRAVLDMVRQLKKDV 295
                 555568999999************************9975 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   1.0     0.041        56     186     234 ..     257     309 ..     242     319 .. 0.70
   2 ?   11.2   4.5   0.00012      0.17     155     212 ..     335     395 ..     308     399 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.041
                 SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH....HHHHHHHH- CS
        ThiG 186 spsdaaqamelGadavllntavaeakdpvamArafklave....aGrlaylag 234
                   + a + ++ G+d ++++ta  + +    m r +k+ v+     G +a  ag
  KIR63053.1 257 AYKRARALVDAGVDVIIVDTAHGHQRAVLDMVRQLKKDVTidivGGNVATYAG 309
                 2344556789**********************999987642222566666665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00012
                 TTS----S-HHHHHHHHHH-...SS-BEEES---SHHHHHHHHHTT-SEEEESHHHHTSSS CS
        ThiG 155 iGsglGllnkealkiiieea...kvPvivDAGigspsdaaqamelGadavllntavaeakd 212
                 i +g G+ + +a+    + a    vPvi D Gi  + d+a+a+  Gad+v+l + +a  ++
  KIR63053.1 335 IVAGVGVPQITAIMEAARAArpaGVPVIGDGGIQYSGDIAKALVAGADTVMLGSLLAGCEE 395
                 556666655555544433332338****************************999887765 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.8   2.4e-05     0.034     156     225 ..     255     329 ..     243     341 .. 0.81
   2 ?   -3.5   0.0       4.2   5.8e+03     166     175 ..     377     386 ..     373     390 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.4e-05
  PEP_mutase 156 eeaieRaraYaeAGAdgvfvpglqkdae.iaelvaavd..vplnvvp.l.kgtlsvaelaelGvarislgnhllr 225
                 e+a +Rara ++AG d+++v  ++  +  + ++v++++  v + +v  +  +    ++l e+G+  + +g  + +
  KIR63053.1 255 EDAYKRARALVDAGVDVIIVDTAHGHQRaVLDMVRQLKkdVTIDIVGgNvATYAGAKALVEAGADGVKVGVGPGA 329
                 79*********************999988********64677777773334449999999999999988876655 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.2
  PEP_mutase 166 aeAGAdgvfv 175
                 + AGAd+v+ 
  KIR63053.1 377 LVAGADTVML 386
                 569****997 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.8   0.00097       1.3      13      40 ..     251     278 ..     245     385 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00097
  NAD_binding_7  13 vGgGevAarkvrklleagakvtvvapev 40 
                    vG Ge A++++r l++ag +v++v+ + 
     KIR63053.1 251 VGVGEDAYKRARALVDAGVDVIIVDTAH 278
                    9***********************9994 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1       0.1   1.4e+02      59      89 ..     263     292 ..     256     297 .. 0.67
   2 ?    7.8   0.7    0.0013       1.7     134     174 ..     285     325 ..     276     339 .. 0.85
   3 ?    2.4   0.1     0.054        74     141     177 ..     355     391 ..     341     397 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.1
                 HHHTTT-SEEEEE--SS--T--HHHHHHHHH CS
        NanE  59 eLaaagadiialDatdrerpvtieelikkik 89 
                 +L++ag+d+i +D+++ ++   + ++++++k
  KIR63053.1 263 ALVDAGVDVIIVDTAHGHQRA-VLDMVRQLK 292
                 689999999999987655443.334555555 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0013
                 HHHHHHHHHTT--EEEES---SHHHHHHHHTT--SEEEE-H CS
        NanE 134 falvkalseaglkviaeGrintPekakkaieiGvdavvvGs 174
                 +++v++l+++    i+ G + t + ak  +e G+d v vG 
  KIR63053.1 285 LDMVRQLKKDVTIDIVGGNVATYAGAKALVEAGADGVKVGV 325
                 6799*****99999***********************9993 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.054
                 HHTT--EEEES---SHHHHHHHHTT--SEEEE-HHHH CS
        NanE 141 seaglkviaeGrintPekakkaieiGvdavvvGsait 177
                   ag+ vi +G i+     +ka+  G+d+v++Gs ++
  KIR63053.1 355 RPAGVPVIGDGGIQYSGDIAKALVAGADTVMLGSLLA 391
                 568999********999999*************9876 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.7      0.21   2.9e+02     231     275 ..     285     326 ..     280     340 .. 0.72
   2 ?   10.4   1.5    0.0002      0.28     243     276 ..     357     390 ..     335     395 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.21
                 HHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHH CS
      DHO_dh 231 lkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvyta 275
                 l ++r+l+k +   i i+g G + +   a   +eaGA  v+v+ +
  KIR63053.1 285 LDMVRQLKKDVT--IDIVG-GNVATYAGAKALVEAGADGVKVGVG 326
                 344555555555..55554.66999999*********99999865 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0002
                 T.S-EEEESS--SHHHHHHHHHHTECEEEESHHH CS
      DHO_dh 243 keipiIgvGGiesgeDalekieaGAslvqvytal 276
                   +p+Ig GGi+ + D    + aGA  v +++ l
  KIR63053.1 357 AGVPVIGDGGIQYSGDIAKALVAGADTVMLGSLL 390
                 459*************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 3621.83
//
Query:       KIR63054.1  [L=372]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.8e-34  117.4   0.3    1.1e-31  110.1   0.1    2.1  2  IMPDH         IMP dehydrogenase / GMP reductase domain
    8.3e-10   38.2   3.0    1.7e-09   37.2   2.6    1.7  2  FMN_dh        FMN-dependent dehydrogenase
    2.7e-05   23.5   2.5    4.8e-05   22.7   1.4    1.7  2  Glu_synthase  Conserved region in glutamate synthase
  ------ inclusion threshold ------
      0.013   14.9   8.3       0.18   11.2   0.8    2.6  3  NMO           Nitronate monooxygenase
       0.07   12.4   6.6        1.9    7.7   1.5    2.6  3  ThiG          Thiazole biosynthesis protein ThiG
       0.14   11.3   0.7        9.4    5.4   0.0    2.7  3  NanE          Putative N-acetylmannosamine-6-phosphate epimer


Domain annotation for each model (and alignments):
>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.1   3.7e-35   1.1e-31       2     247 ..      17     298 ..      16     309 .. 0.84
   2 !    5.4   0.0    0.0026       7.7     305     327 ..     343     365 ..     340     370 .. 0.90

  Alignments for each domain:
  == domain 1  score: 110.1 bits;  conditional E-value: 3.7e-35
                 --GGGEEEE---B-S-GGGSB--EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHHHHHHHHHTS.................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
       IMPDH   2 ltfddvllvpaksevlpkevdlktkltkkiklniPlvsaamdtvtesemAialareGgigvihknlsieeqaeevkkvkrs.................. 82 
                 +  dd+ +vp++ +   ++v+++ +l    +  iP v  + d+      A+ l + Gg+gv+  +   ++  +  k +k+                   
  KIR63054.1  17 YHLDDIAIVPSRRTRDVDDVSTTWQLD-AYQFGIPCVGHPSDATMSPASAVRLGQLGGLGVLNVEGLWTRYENPTKVLKELasldedaratkrlqevya 114
                 5679*****************998886.67********************************9998777777776666666889*************** PP

                 ....TTSXBXTTSXB-EEE.....EE-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHH..HHHHHHHTTT..SEEEEEEE-SHHHHHHHHHTT-S CS
                 ....xxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  83 ....pnaakdekgrllvga.....avgvkedalervkalveagvdvlvvdsahghsekvlea..vkeikkkvee..veviaGnvataegakaLieagad 168
                     p+   ++ ++l+ g       v+ + ++l+ +  +++agvd+lv+  +    e+v ++    ++k+ + +  + vi+G  ++++ a +L+++ga 
  KIR63054.1 115 epirPDLIAERVRELRAGGgtvavRVSPQ-HTLALAPVILDAGVDILVIQGTIVSAEHVSTTdePLNLKEFIADldLPVIVGGCTDYKTALHLMRTGAA 212
                 ****5555565556655531110044444.578889999**********97665555554441144566666543499********************* PP

                 EEEE-SS-STTBHHHHHCSB---HHHHHHHHHHHHCTC.T......-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 169 avkvGiGpGsiCttrvvagvGvpqltAvaevaeaakka.g......vpviaDGGikysgdivkAlaaGadavmlGsllagteEspg 247
                 +v vGiG     tt  v g+ vp +tA+a++a+a +++ +      v++iaDG i++sgdi+kAl +GadavmlG+ l+ + E+p+
  KIR63054.1 213 GVIVGIGGDGWSTTESVLGIRVPMATAIADAAAARRDYlDetggryVHLIADGDIQTSGDIAKALGCGADAVMLGEPLSLCAEAPA 298
                 ********************************99988743678999***************************************7 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0026
                 HHHHHHHHHHHHHT-SSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 305 qlvgglrsgmgylGaktieelke 327
                 +l+gglr +m ++G ++++e+++
  KIR63054.1 343 NLFGGLRRAMAKCGYRDLKEFQK 365
                 5789*****************97 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   2.6   5.6e-13   1.7e-09     204     304 ..     177     291 ..     111     301 .. 0.77
   2 ?   -2.3   0.0      0.59   1.7e+03     326     342 ..     348     364 ..     344     367 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 5.6e-13
                 -HHHHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCH.......HHHHHHH............S.S-EEEESS--SHH CS
      FMN_dh 204 twddikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvL.......peiveav..........ggr.ievlvDgGirrGs 284
                 +  ++k++ + ++lp++v G  + ++a  +++ G+ g++v   GG   dg  +t +vL        +i++a+          ggr + +++Dg i++  
  KIR63054.1 177 EPLNLKEFIADLDLPVIVGGCTDYKTALHLMRTGAAGVIVG-IGG---DGWSTTESVLgirvpmaTAIADAAaarrdyldetGGRyVHLIADGDIQTSG 271
                 4557999999****************************996.566...33333333333333333344444455666666654455************* PP

                 HHHHHHHTT-SEEEESHHHH CS
      FMN_dh 285 DvlkAlalGAdavllGRpfl 304
                 D++kAl +GAdav+lG p+ 
  KIR63054.1 272 DIAKALGCGADAVMLGEPLS 291
                 ****************9974 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.59
                 HHHHHHHHT-SBHHHHH CS
      FMN_dh 326 lertmallGvksvaeld 342
                 l+r+ma +G ++++e +
  KIR63054.1 348 LRRAMAKCGYRDLKEFQ 364
                 789**********9986 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.26   7.8e+02     191     236 ..     123     165 ..     111     166 .. 0.80
   2 !   22.7   1.4   1.6e-08   4.8e-05     238     304 ..     219     288 ..     200     295 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.26
                   HHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-T CS
  Glu_synthase 191 aqliedLkevnkeakvsvKlvaeagvetiaagvakanadiilidGl 236
                   a+ +++L+  +    v v++  +++     + + +a++di++i+G+
    KIR63054.1 123 AERVRELRAGG--GTVAVRVSPQHTLALAPV-ILDAGVDILVIQGT 165
                   55666666555..678899999999888877.99*********996 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 1.6e-08
                   ---SSEEHHHHHHB---HHHHHHHHHHH...HHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SH CS
  Glu_synthase 238 GGTGAspkssikhaGlPlelalaevdqt...lkeeglrdrvsliadGglktgadvvkalalGAdavgigt 304
                   GG G s ++s+    +P+ +a+a +  +     +e   + v+liadG+++t+ d++kal  GAdav +g 
    KIR63054.1 219 GGDGWSTTESVLGIRVPMATAIADAAAArrdYLDETGGRYVHLIADGDIQTSGDIAKALGCGADAVMLGE 288
                   899999999999999*******876544111556667789**************************9996 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.52   1.6e+03      32      63 ..      69     115 ..      49     131 .. 0.62
   2 ?    7.6   0.7   0.00072       2.1     149     222 ..     149     217 ..     123     219 .. 0.77
   3 ?   11.2   0.8   5.9e-05      0.18     194     233 ..     259     298 ..     234     306 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.52
         NMO  32 snaGgLGvla.sgylta..............Drlakeirkvkaltdk 63 
                  + GgLGvl   g  t               D+ a + ++++++ ++
  KIR63054.1  69 GQLGGLGVLNvEGLWTRyenptkvlkelaslDEDARATKRLQEVYAE 115
                 46799999986666666555555555555555555555555555555 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00072
         NMO 149 arkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqig 222
                 a ++  +G D+l++qG          ++ + + ++L + ++d +d+Pvi  GG  d +     ++ GA+gv +g
  KIR63054.1 149 APVILDAGVDILVIQGTIVSAEHV--ST-TDEPLNLKEFIAD-LDLPVI-VGGCTDYKTALHLMRTGAAGVIVG 217
                 5567889*********87544333..22.2567888888887.8*****.599******************998 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 5.9e-05
         NMO 194 iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesda 233
                 + +iA G i +  ++a aL  GA +v +g  + l+ e++a
  KIR63054.1 259 VHLIADGDIQTSGDIAKALGCGADAVMLGEPLSLCAEAPA 298
                 679*********************************9998 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.17   5.1e+02     175     184 ..     148     157 ..      96     161 .. 0.71
   2 ?    7.7   1.5   0.00065       1.9     135     204 ..     147     217 ..     118     251 .. 0.74
   3 ?    6.2   1.1    0.0019       5.7     176     208 ..     259     291 ..     232     302 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.17
                 SS-BEEES-- CS
        ThiG 175 kvPvivDAGi 184
                   Pvi+DAG+
  KIR63054.1 148 LAPVILDAGV 157
                 5699999998 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00065
                 HHHHHHHHTT-SEBEEBSSSTTS---..-S-HHHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEES CS
        ThiG 135 vlarrleevGcaavmPlaapiGsglG..llnkealkiiieeakvPvivDAGigspsdaaqamelGadavlln 204
                  la  + ++G+  ++  ++ + + +     ++ +lk +i+++++Pviv  G    + a + m  Ga +v++ 
  KIR63054.1 147 ALAPVILDAGVDILVIQGTIVSAEHVstTDEPLNLKEFIADLDLPVIV-GGCTDYKTALHLMRTGAAGVIVG 217
                 456667888888877777666655441134577999************.5999999*************985 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0019
                 S-BEEES---SHHHHHHHHHTT-SEEEESHHHH CS
        ThiG 176 vPvivDAGigspsdaaqamelGadavllntava 208
                 v +i D  i ++ d+a+a+  Gadav+l   ++
  KIR63054.1 259 VHLIADGDIQTSGDIAKALGCGADAVMLGEPLS 291
                 77999**********************987665 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.035     1e+02     154     183 ..     144     173 ..     119     176 .. 0.85
   2 ?    1.9   0.2     0.037   1.1e+02     125     173 ..     170     217 ..     150     219 .. 0.64
   3 ?    5.4   0.0    0.0031       9.4     145     176 ..     259     290 ..     242     296 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.035
                 -SHHHHHHHHTT--SEEEE-HHHH-HHHHH CS
        NanE 154 ntPekakkaieiGvdavvvGsaitrleeia 183
                 +t ++a  +++ Gvd +v+ + i   e++ 
  KIR63054.1 144 HTLALAPVILDAGVDILVIQGTIVSAEHVS 173
                 67788999***************9999986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.037
                 TTS-.SS--HHHHHHHHHTT--EEEES---SHHHHHHHHTT--SEEEE- CS
        NanE 125 keeekaepDfalvkalseaglkviaeGrintPekakkaieiGvdavvvG 173
                 ++ + +++ ++l + + + +l vi+ G  +  + a + +++G++ v+vG
  KIR63054.1 170 EHVSTTDEPLNLKEFIADLDLPVIVGGCTD-YKTALHLMRTGAAGVIVG 217
                 223334555778788888888899888665.467888999999999998 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0031
                 --EEEES---SHHHHHHHHTT--SEEEE-HHH CS
        NanE 145 lkviaeGrintPekakkaieiGvdavvvGsai 176
                 +++ia+G i+t    +ka+ +G+dav++G  +
  KIR63054.1 259 VHLIADGDIQTSGDIAKALGCGADAVMLGEPL 290
                 679*************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2525.19
//
Query:       KIR63055.1  [L=471]
Description: peptidase M1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-26   92.7   0.3      5e-26   91.6   0.3    1.5  1  Peptidase_M1    Peptidase family M1 domain
    1.1e-12   48.5   0.0    2.3e-12   47.5   0.0    1.4  1  Peptidase_M1_N  Peptidase M1 N-terminal domain
  ------ inclusion threshold ------
       0.15   12.3   0.4         30    4.9   0.0    3.0  3  DUF4157         Domain of unknown function (DUF4157)
       0.15   12.4   2.4        6.7    7.2   2.4    2.3  1  Peptidase_M61   M61 glycyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.3   1.1e-29     5e-26      69     218 .]     325     461 ..     318     461 .. 0.85

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 1.1e-29
                   HHHHHHHHHHHBTTTEEESSGGGGHHHHHHHHHHHHHHHHHHSCCCHCHHHHHHHCHHHHHHHHTSTTHHHSSGG-GSHHHHHHTSSHHHHHHHHHH CS
  Peptidase_M1  69 eviaHElaHqWfGnlVtmkwWddlwLnEGfatyleylildklepewevseqllleeveealsedaldeshpitqevekpseidevFdsiaYeKGasl 165
                    v+aHElaHqWfG+ V+++ W+d+wLnEGfaty+e+l+l++  + + v++++       a  + a+d s+p    v+      ++F   +Y++Ga  
    KIR63055.1 325 GVVAHELAHQWFGDSVSLARWSDIWLNEGFATYAEWLWLEHDGG-RTVEQTV-------AARYAATDWSQPS---VDP--GRANMFGDAVYQRGALA 408
                   69***************************************444.4434444.......4455555556665...232..3568************* PP

                   HHHHHHHCTHHHHHHHHHHHHHHCTTEEE-HHHHHHHHHHCCCSCHHTHHHHH CS
  Peptidase_M1 166 lrmlekllgeevFqkglksYlkefkyknaetedlwdaleealnkdisevmdtw 218
                   ++ l+++lg++vF + l+++ +e + +na+t d++   e++++  + +++d w
    KIR63055.1 409 VHALRRTLGDDVFFRVLRAWTTERRGGNATTADFVALAERVSGRRLGALLDAW 461
                   ***********************************999999999999998888 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   5.2e-16   2.3e-12       4     186 .]      60     230 ..      58     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 5.2e-16
                     EEEEEEEEETTTTEEEEEEEEEEEESS-ECEEEEEESSEEEECEEEEECTTCTCEEEEEEEECTTTTCEEEEECCEEETTCEEEEEEEEEEE-.. CS
  Peptidase_M1_N   4 hYdldlkidlkektfkGsvtitlqlkeatseivldakdlkiksvslsaevksesvkidfkieqkdeelltiklkeslqqtskytLeieyegel.. 96 
                      Y+l+++ d+++  ++G++tit ++++  s   ld + l++        v+ ++ k++    ++++e l+++ ++ l    ++ +++ey g +  
      KIR63055.1  60 AYRLRVRYDPADDRLTGHATITATATAGLSRFNLDLSGLTV------GAVRVDGAKAE---HAREGEELVVTPARGLARGARFAVDVEYAG-Vpq 144
                     69***************************************......88888887777...6789999**********************9.446 PP

                     ..BSSSSEEEEEEEEETSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTSEEEESSECCCEEEETTCEEEEEEEEEESBEGGG CS
  Peptidase_M1_N  97 ..ndklaGlykstYtdkgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkeetalSnmpeeeseklengqkiteFeqtpkmstYL 186
                       + ++ Gl    +  +      +v   ++ +A+ + P  D Ps KAt+++++++p    al n+    ++  + g++++++++  +m +YL
      KIR63055.1 145 pvESSTLGLGG--FLATAD---GAVALGQPDSASTWYPVNDHPSDKATYDVEVTVPDGLAALGNGVPVGRTSAG-GWTTWRWAERSPMASYL 230
                     66677777765..334322...3678899************************************766566665.9***************9 PP

>> DUF4157  Domain of unknown function (DUF4157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.8   8.1e+03      20      41 ..      62      83 ..      55      87 .. 0.71
   2 ?    4.9   0.0    0.0068        30      59      71 ..     321     333 ..     311     335 .. 0.82
   3 ?    4.0   0.0     0.013        60      24      50 ..     397     423 ..     379     439 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.8
     DUF4157 20 dVrvhtgsaaaraaralgAqAf 41
                + rv+ ++a +r++ +    A 
  KIR63055.1 62 RLRVRYDPADDRLTGHATITAT 83
                5688999998888877666654 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0068
     DUF4157  59 aagrellaHELtH 71 
                 + ++ ++aHEL+H
  KIR63055.1 321 RPDTGVVAHELAH 333
                 567889******* PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.013
     DUF4157  24 htgsaaaraaralgAqAfTlgndivfa 50 
                   ++  +r a a++A   Tlg+d++f+
  KIR63055.1 397 FGDAVYQRGALAVHALRRTLGDDVFFR 423
                 556777888999999999********5 PP

>> Peptidase_M61  M61 glycyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   2.4    0.0015       6.7       4      66 ..     325     376 ..     323     402 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0015
                    HHHHHHHHHTTBTTTB-BGGGSS---SS----STHHHHTHHHHHHHHHHHHHTTSS-HHHHHH CS
  Peptidase_M61   4 gllaHEyfHsWnvkrirPaelepfdyekenytellwvaEGlTsYygdlllarsgliseeeyle 66 
                    g++aHE+ H+W +  +  a           + + +w+ EG+ +Y ++l l + g  + e++++
     KIR63055.1 325 GVVAHELAHQWFGDSVSLA-----------RWSDIWLNEGFATYAEWLWLEHDGGRTVEQTVA 376
                    5677888888877655333...........446789999999999999999998888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3631.30
//
Query:       KIR63056.1  [L=282]
Description: LysR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-22   78.6   2.3    2.5e-22   78.6   2.3    1.8  2  HTH_1           Bacterial regulatory helix-turn-helix protein
    6.8e-16   58.3   9.5    6.8e-16   58.3   9.5    2.6  2  LysR_substrate  LysR substrate binding domain


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   2.3   2.8e-26   2.5e-22       2      59 ..       4      61 ..       3      62 .. 0.98
   2 ?   -4.6   2.5         2   1.8e+04       7      22 ..      72      88 ..      70      90 .. 0.60

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 2.8e-26
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                r lr+fvavaee +f rAA++Lg++qp +sr+i++LE++lgv+L+eR++r+++LTeaG
  KIR63056.1  4 RELRYFVAVAEELHFGRAAQRLGIAQPPLSRAIAQLERRLGVTLLERSSRSVTLTEAG 61
                78*******************************************************9 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 2
                HHHHHHHS.SHHHHHHH CS
       HTH_1  7 fvavaeeg.sftrAAee 22
                ++ava +    +rAA++
  KIR63056.1 72 LDAVAAADrRTRRAARA 88
                55666555466677765 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   1.3      0.07   6.3e+02     146     195 ..      39      86 ..      21      90 .. 0.69
   2 !   58.3   9.5   7.6e-20   6.8e-16      14     203 ..     101     278 ..      94     281 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.07
                     HHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTCCCHH CS
  LysR_substrate 146 vaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgrelsp 195
                      +  lG++ll rs  +  l + + v l +++ ++   +++++ r+ r + +
      KIR63056.1  39 LERRLGVTLLERSSRSVTLTEAGSV-LLVEG-RAAlDAVAAADRRTR-RAA 86 
                     5678999999999999999888888.88888.555244444444443.333 PP

  == domain 2  score: 58.3 bits;  conditional E-value: 7.6e-20
                     CCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGGGCTSEEE CS
  LysR_substrate  14 ptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLaeeplvlvaspdhpLargepvsledLadepli 107
                       +++ ll++ll +++a+   v ++++     e+++ll++g++D+a++++p  +  g++ ++L++e  v++++++h+La++++++ +d+ad+p +
      KIR63056.1 101 AGASSELLAKLLDAYAAEPGAVAVDVHLCGIGEQERLLRDGRADVALLHRPFdSVVGFDTEELYTEGQVVLLPAGHHLAGRAELREADVADLPGL 195
                     567899**********************************************999**************************************** PP

                     EESTTSTHHHHHHHHHHCTTEEC.EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCCHHHHHHHH CS
  LysR_substrate 108 lleegsglrdlledalreaglkp.rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrelspavrafi 201
                      l+     r+  +d     g  p  ++ +v + + l++l+a G   a+lp+s   +   + ++ a+p+++ +++ ++++++++++ +s+a++ +i
      KIR63056.1 196 PLP-----RWPRRD-----GSYPdGPGPQVRDHAQLYELIALGRASAVLPESCRVH--LRRDIAAVPVSD-APSVTTVIAWPPHS-RSRALAVLI 276
                     977.....333333.....33333455677***********************755..4446999*****.**************.999999998 PP

                     HH CS
  LysR_substrate 202 df 203
                     + 
      KIR63056.1 277 RT 278
                     75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2279.32
//
Query:       KIR63057.1  [L=373]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-34  117.2   0.0      9e-34  116.8   0.0    1.1  1  LytR_cpsA_psr  Cell envelope-related transcriptional attenuat
  ------ inclusion threshold ------
        0.1   12.2   0.0       0.18   11.4   0.0    1.3  1  UNC119_bdg     UNC119-binding protein C5orf30 homologue


Domain annotation for each model (and alignments):
>> LytR_cpsA_psr  Cell envelope-related transcriptional attenuator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.0     1e-37     9e-34       2     151 ..      94     277 ..      93     278 .. 0.93

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 1e-37
                    -SEEEEEEEEGGGTEEEEEEE-TTBEE-----.....--...---EES-TTTTT..............-HHHHHHHHHHHHTS---EEEEE-HHHH CS
  LytR_cpsA_psr   2 sDtimlvtvnakkkkvklvSipRDtlveipgg..eskat...gekkinsayalg..............gaellvktvekllginidyYvevdfegf 78 
                     D++++ +v++  +++ l+S+pRD lv+ip +          g++k+++a ++g              g ell++tv+ ++g++ d  ++v f+gf
     KIR63057.1  94 GDAVLVAHVPQGLDRAYLFSLPRDLLVDIPAYpkA---GysgGKTKLTHAMSYGsrvpgkpkkpstaqGYELLRSTVSGYTGLRFDAGAVVTFTGF 186
                    699***************************88322...234589**************************************************** PP

                    HHHHHHHT---B-------------...................-------B---HHHHHH-------------SHHHHHHHHHHHHHHTT- CS
  LytR_cpsA_psr  79 aklvdalgGvevdvkedvkdkeese...................lklkaGeqkldGeqalayvRfRkddeegDlgRikrQqqvleallkklk 151
                    +klvda+gGv+ +v++++ +  + +                   +   +Ge +l+G qal y+R+R+++++gD++R+++Qqq+++a++ k++
     KIR63057.1 187 EKLVDAVGGVDLYVDQRTVSL-HRRpdgrhreaapggggyvgpqMVYAKGERHLNGWQALDYARQRYGLKNGDYDRQRHQQQLIRAIVAKMQ 277
                    *****************9765.3336778999************99********************************************98 PP

>> UNC119_bdg  UNC119-binding protein C5orf30 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     2e-05      0.18      27      67 ..     148     190 ..     126     196 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2e-05
  UNC119_bdg  27 aekprcsstp..cspirrtvsGyqilhmdsnylvgfttGeell 67 
                 + kp+  st      +r+tvsGy  l +d+  +v+ft  e+l+
  KIR63057.1 148 PGKPKKPSTAqgYELLRSTVSGYTGLRFDAGAVVTFTGFEKLV 190
                 4566655554114579*********************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2725.67
//
Query:       KIR63058.1  [L=564]
Description: cholesterol oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-14   53.8   0.0    2.8e-14   53.2   0.0    1.3  1  GMC_oxred_N      GMC oxidoreductase
    2.4e-14   54.1   0.7    5.7e-14   52.9   0.7    1.6  1  GMC_oxred_C      GMC oxidoreductase
    2.9e-11   43.5   5.1    1.1e-10   41.7   5.0    1.8  1  DAO              FAD dependent oxidoreductase
    3.5e-07   29.7   0.0    0.00018   20.9   0.0    2.2  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    5.8e-07   28.9   5.3    9.2e-05   21.7   0.4    2.2  2  FAD_binding_2    FAD binding domain
    3.7e-05   23.9   0.8    0.00019   21.6   0.8    2.3  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
     0.0032   16.2   0.1       0.24   10.1   0.1    2.1  2  HI0933_like      HI0933-like protein
  ------ inclusion threshold ------
      0.011   16.2   0.1       0.86   10.2   0.0    2.4  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
      0.012   15.7   0.2      0.023   14.9   0.2    1.3  1  Fer4_9           4Fe-4S dicluster domain
      0.013   14.8   0.1      0.022   14.0   0.1    1.4  1  FAD_binding_3    FAD binding domain
       0.03   14.9   0.7      0.058   14.0   0.7    1.3  1  Fer4_7           4Fe-4S dicluster domain
      0.085   12.3   0.6          3    7.3   0.1    2.2  2  OpcA_G6PD_assem  Glucose-6-phosphate dehydrogenase subunit
       0.22   10.6   0.0       0.47    9.5   0.0    1.5  2  GIDA             Glucose inhibited division protein A
       0.24   11.3   3.0        0.4   10.6   3.0    1.3  1  Fer4             4Fe-4S binding domain
       0.24   12.4   6.9       0.41   11.7   6.9    1.4  1  Fer4_3           4Fe-4S binding domain
       0.56   10.8   3.8       0.94   10.2   3.8    1.3  1  Fer4_4           4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   2.5e-17   2.8e-14       1     264 [.       3     279 ..       3     292 .. 0.77

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 2.5e-17
  GMC_oxred_N   1 vdelveggGsagsvvAaRLsedpstsvlvleaggreknrl........imvlalalklidkklntayetepekalngrrlilpaGktlGGgsvvNwsa 90 
                  +d lv+g+G  gsv+A RL+e++  sv vleag r  + +          +l +      +    + ++ + + + g +l+l +G+++GGgs+v + +
   KIR63058.1   3 YDVLVIGSGFGGSVTALRLAEKG-YSVGVLEAGRRFADDEfpetswrlRRFLWAPRLGCYGLQRITLLRSADRRTGGGVLVL-SGAGVGGGSLVYANT 98 
                  689*****************987.69*******9877666555655433333333333445555667788899999999999.***********9999 PP

  GMC_oxred_N  91 yiRtpaadlde..Weeeaglegwssdevlpafkkvetaqale.........sdlhgvdgrlgvtekgkeesplnkallkaaeelGlp...vprdlngk 174
                   + + +a + +  W+++   +    +e++p ++++ +   +          + +++v+ r+gv +++  +   +++ + + + +      v  + +g+
   KIR63058.1  99 LYEPLDAFYADpqWRDVTDWR----AELAPHYDQAKRMLGVTtyplhtradAAMRAVADRMGVGHTFHPTPVGVHIGRPGERAADPYfggVGPERTGC 192
                  999999888743377764332....3444444444433333344445566699**********888888888888888776666655889999***** PP

  GMC_oxred_N 175 hqcGvcllgvtcrtgarqstarawLrpalerpnleiltgakaekiil.egrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLq 264
                   +cG c++g  cr+ga++   +++L  a +  ++++   ++++ +   +g + r+  V++    +  +r+v  a++vv+aaGal +  lL 
   KIR63058.1 193 THCGACMTG--CRQGAKNTLVKNYLWLAERL-GVQVHPLTTVTAVRPaDGGGYRVETVRTGAWPRR-RRRVWHADQVVLAAGALGTQRLLH 279
                  *********..**************988777.****999999999334666677777777777666.9999999************99996 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.7   5.1e-17   5.7e-14      87     144 .]     465     522 ..     461     522 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 5.1e-17
                  -S--B-TT-B-STCGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  87 saHplGtcrMGadpkdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  +aH+lG++ +Ga p+d+V+D++ rvhg+++L+VvD++++  ++g+np+lti+a Ae+a
   KIR63058.1 465 TAHILGGAVIGATPADGVIDPYHRVHGHPGLHVVDGAAVSANLGVNPSLTITAQAERA 522
                  68******************************************************97 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   5.0   9.6e-14   1.1e-10       1     207 [.       4     278 ..       4     307 .. 0.71

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 9.6e-14
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT....SSGGGSSEEEEESSS...STHHSTH................................... CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag....sgaSgrnsgllhsgl...rylpeas................................... 55 
                 dv++iG+G  G+ tA+ La++g  V +le+g++++     ++S+r  ++l++     +                                         
  KIR63058.1   4 DVLVIGSGFGGSVTALRLAEKGysVGVLEAGRRFAddefPETSWRLRRFLWAPRlgcYG----Lqritllrsadrrtgggvlvlsgagvgggslvyant 98 
                 8********************************9999866**********997666522....13456777788889999***************9999 PP

                 .....HHHHHHHHH.HHHHHHHHHHHSSTTSEEEEEEEEEES...SHHHHHHHHHHHHHH......HHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETT CS
         DAO  56 .....elarlslea.leelreleeelgididyrrtGllslaa...deeelealdkllall......leagldaelldaeevrelepalpgllgalfypd 139
                      +   ++++  ++   ++ +el+++ d  +++l ++++   ++   +a+++ +++       ++  + ++ + +   r+ +p    + g+++   
  KIR63058.1  99 lyeplD--AFYADPqWRDVTDWRAELAPHYDQAKRMLGVTTYplhTR-ADAAMRAVADRMgvghtfHPTPVGVH-IGRPGERAADP----YFGGVGPER 189
                 887441..444443223336666777777776665555555433222.12333333333355577743344434.55544566665....678888777 PP

                 EEEEEHHHHHHH............HHHHHHHTT-EEEESECEEEEEEEETCEEEEE.......EECTEEEE......EEEEEEE--GGGHH..HH CS
         DAO 140 tgqvdpakltaa............laraaealGveilegtevtgleeedgkvwgve.......rttpgend......aadavVnaaGawsd..ll 207
                 tg+ ++ + + +            ++  ae+lGv+++  t+vt+++  dg++++ve              +      +ad+vV+aaGa  +  ll
  KIR63058.1 190 TGCTHCGACMTGcrqgakntlvknYLWLAERLGVQVHPLTTVTAVRPADGGGYRVEtvrtgawP------RrrrrvwHADQVVLAAGALGTqrLL 278
                 78888888888877777777777788889999*************8888888888665343220......134567777********86444444 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.6e-07   0.00018       1      35 [.       3      37 ..       3      49 .. 0.88
   2 !    6.6   0.0    0.0036         4     193     247 ..     218     280 ..     201     294 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.6e-07
                 CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtc 35
                 +dv+viG+G++G  +al+la++g+ v ++e+++ +
   KIR63058.1  3 YDVLVIGSGFGGSVTALRLAEKGYSVGVLEAGRRF 37
                 69***************************977766 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0036
                  HHHTTEEEEESCEEEEEEETTE...EEEEEETTSCE........EEESEEEE-S-EEES-HHCSHC CS
                  xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 193 lekeGvevklgtsvkeidgnge...klevvledgee........idadlvvvavGvrpstelleek 247
                   e+ Gv+v+  t+v+++++ +    ++e  +               ad vv+a+G    ++ll  +
   KIR63058.1 218 AERLGVQVHPLTTVTAVRPADGggyRVE--TVRTGAwprrrrrvWHADQVVLAAGALGTQRLL-HE 280
                  4677***************999955444..33333344567778***********99998888.43 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.4   8.2e-08   9.2e-05       1      33 [.       4      36 ..       4      39 .. 0.94
   2 !    9.4   0.6   0.00045       0.5      22     212 ..      77     283 ..      71     312 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 8.2e-08
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   Dv+ViGsG++G + Al++ae+G +v v+e + +
     KIR63058.1  4 DVLVIGSGFGGSVTALRLAEKGYSVGVLEAGRR 36
                   9***************************99875 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00045
                    TT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHHHHTT----BCCTS.SB-EEE- CS
  FAD_binding_2  22 GlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeLeelgvpfsrtedg.pvdvrel 116
                    G  v+v++ +++ gg+++++      ++      a   d     +td++++l+ ++dq+   ++v++ p   +  +++ +  +r   g +++ +++
     KIR63058.1  77 GGGVLVLSGAGVGGGSLVYANTLYEPLD------AFYADPQWRDVTDWRAELAPHYDQAKRMLGVTTYPLHTRADAAMRAVADRMGVGhTFHPTPV 166
                    5568888888888888888887777777......22237788899999999999999999999988888777766666555555333356777777 PP

                    TT-SST....................EEEE-.STT-.......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTT...EEEEEEEEETTTTCEE CS
  FAD_binding_2 117 Gglsat....................artlhdaadarr.etlvtghallarlvesarkagvdfqerteadeLivedg...rvtGavvenpesgrev 188
                    G +  +                         ++++     + +  ++l++  +  a+++gv++++ t ++++   dg   rv ++        r++
     KIR63058.1 167 GVHIGRpgeraadpyfggvgpertgcT----HCGACMTgCRQGAKNTLVKNYLWLAERLGVQVHPLTTVTAVRPADGggyRVETVRTGAWPRRRRR 258
                    777777777777777777777655431....23333333556788999999999999999************888888999999988877778888 PP

                    EEEESEEEE-----GG......... CS
  FAD_binding_2 189 rirakavvlatgGfgr.allkellg 212
                      +a++vvla+g+ g   ll+e+ +
     KIR63058.1 259 VWHADQVVLAAGALGTqRLLHEMKA 283
                    899************9744444333 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.8   1.7e-07   0.00019       1      31 [.       7      37 ..       7      38 .. 0.96

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.7e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31
                   ++G+G++G+v+A +La++g++v +le+++r+
     KIR63058.1  7 VIGSGFGGSVTALRLAEKGYSVGVLEAGRRF 37
                   8**************************9885 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   0.00021      0.24       1      35 [.       3      37 ..       3      39 .. 0.94
   2 ?    4.0   0.0     0.014        16     109     166 ..     208     273 ..     202     286 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00021
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVlllekakkl 35
                 +dv+viG G  G  +A+++a++g +V +le+++++
   KIR63058.1  3 YDVLVIGSGFGGSVTALRLAEKGYSVGVLEAGRRF 37
                 59****************************99887 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.014
                  HHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.........TTEEEEESEEEE----SS CS
  HI0933_like 109 edivdallkelkeagvklrletevksvekeedgkfrvkt.k.......seeeleadklvlAtGGlS 166
                  +++v+ +l  +++ gv+++  t+v++v+  ++g +rv+t +        ++ ++ad++vlA G l 
   KIR63058.1 208 NTLVKNYLWLAERLGVQVHPLTTVTAVRPADGGGYRVETvRtgawprrRRRVWHADQVVLAAGALG 273
                  5677888888999*************************964688887778899********99865 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00077      0.86       2      36 ..       5      40 ..       4      48 .. 0.88
   2 ?    3.4   0.0       0.1   1.1e+02      49      76 ..     217     244 ..     203     249 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00077
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.T CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll.r 36
                v+v+G+G+ g   A  lae g +V v+e++ ++   
  KIR63058.1  5 VLVIGSGFGGSVTALRLAEKGYSVGVLEAGRRFAdD 40
                89***************************9999833 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
                 HHHHTTEEEECSEEEEEEEEETTSEEEE CS
   Pyr_redox  49 klekngievllntkveeiegsedgvesv 76 
                   e++g++v+  t+v++++  + g ++v
  KIR63058.1 217 LAERLGVQVHPLTTVTAVRPADGGGYRV 244
                 56889**************777663334 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.2     2e-05     0.023      34      50 ..     190     206 ..     150     208 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2e-05
      Fer4_9  34 eaCigCgaCveaCpkga 50 
                 + C++CgaC+  C +ga
  KIR63058.1 190 TGCTHCGACMTGCRQGA 206
                 57999999999999875 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1     2e-05     0.022       2      34 ..       3      35 ..       2      41 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2e-05
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   +dVl++G+G  G ++al L+e+G +v ++e  +
     KIR63058.1  3 YDVLVIGSGFGGSVTALRLAEKGYSVGVLEAGR 35
                   79*************************999765 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.7   5.2e-05     0.058      36      52 .]     190     206 ..     167     206 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.2e-05
      Fer4_7  36 ekClgCgaCvavCPtga 52 
                 + C++CgaC++ C  ga
  KIR63058.1 190 TGCTHCGACMTGCRQGA 206
                 46999999999998876 PP

>> OpcA_G6PD_assem  Glucose-6-phosphate dehydrogenase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0027         3     122     148 ..     108     132 ..      98     167 .. 0.81
   2 ?    3.2   0.1     0.047        53     170     196 ..     215     233 ..     208     306 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0027
  OpcA_G6PD_assem 122 sDLaWtRltpWRellAsafDqerrppl 148
                      +D +W+ +t WR+ lA   Dq  ++++
       KIR63058.1 108 ADPQWRDVTDWRAELAPHYDQ--AKRM 132
                      7889*****************..3333 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.047
  OpcA_G6PD_assem 170 gWLasrLgwpvtreetegdkgvtsvtl 196
                       WLa+rLg++v+  +t        vt 
       KIR63058.1 215 LWLAERLGVQVHPLTT--------VTA 233
                      5********7744333........222 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00042      0.47       1      27 [.       4      30 ..       4      43 .. 0.90
   2 ?   -3.2   0.0       3.1   3.4e+03     137     155 ..     258     276 ..     254     301 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00042
                CEEEE-SSHHHHHHHHHHHHTT--EEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlL 27
                dv ViG G  G+  Al +a++G++v  
  KIR63058.1  4 DVLVIGSGFGGSVTALRLAEKGYSVGV 30
                79*********************9965 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.1
                 -EEEECEEEE--TT-BT-E CS
        GIDA 137 etikakavviatGtflkgk 155
                 ++ +a++vv+a+G+  +++
  KIR63058.1 258 RVWHADQVVLAAGALGTQR 276
                 5678899999999933333 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.0   0.00035       0.4       8      22 ..     192     206 ..     189     208 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00035
                 SSS-THHHHHSTTTE CS
        Fer4   8 CigCGaCvevCPvgA 22 
                 C++CGaC+  C  gA
  KIR63058.1 192 CTHCGACMTGCRQGA 206
                 ***********9998 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   6.9   0.00036      0.41       1      15 []     192     206 ..     192     206 .. 0.97

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00036
      Fer4_3   1 CtgCgaCvevCPvgA 15 
                 Ct+CgaC+  C+ gA
  KIR63058.1 192 CTHCGACMTGCRQGA 206
                 ************998 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.8   0.00084      0.94       4      16 ..     192     204 ..     187     205 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00084
      Fer4_4   4 CigCgsCvaaCPq 16 
                 C++Cg+C+  C q
  KIR63058.1 192 CTHCGACMTGCRQ 204
                 ***********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4013.64
//
Query:       KIR63059.1  [L=518]
Description: GMP synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-38  132.0   0.0      3e-38  131.5   0.0    1.2  1  GATase         Glutamine amidotransferase class-I
    3.4e-37  126.4   0.0    7.1e-37  125.4   0.0    1.6  1  GMP_synt_C     GMP synthase C terminal domain
    8.8e-10   38.7   0.0    3.1e-09   36.9   0.0    1.9  1  Peptidase_C26  Peptidase C26
    2.9e-09   36.4   0.2    2.8e-06   26.6   0.1    2.2  2  NAD_synthase   NAD synthase
      5e-05   22.3   0.2    9.6e-05   21.3   0.1    1.5  2  tRNA_Me_trans  tRNA methyl transferase
    0.00083   18.9   0.0      0.027   14.0   0.0    2.1  2  QueC           Queuosine biosynthesis protein QueC
     0.0026   17.4   0.0     0.0049   16.5   0.0    1.4  1  ThiI           Thiamine biosynthesis protein (ThiI)
     0.0047   16.7   0.0     0.0072   16.1   0.0    1.3  1  ATP_bind_3     PP-loop family
  ------ inclusion threshold ------
      0.011   15.4   0.1       0.02   14.5   0.1    1.3  1  Asn_synthase   Asparagine synthase
      0.055   13.5   0.0      0.095   12.7   0.0    1.4  1  PAPS_reduct    Phosphoadenosine phosphosulfate reductase fami


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.5   0.0   1.7e-41     3e-38       2     189 ..       9     191 ..       8     192 .. 0.94

  Alignments for each domain:
  == domain 1  score: 131.5 bits;  conditional E-value: 1.7e-41
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspgvegkieaikearenkiPiLGICLGmQllaiefgrkvvkekekeh 100
                 ++D+++++ + ++++++e++v+ e+vp++ +  e   l+k+p +i++sgGp s+++  ++++   ++++++P++GIC+G+Q++a+++g++v +  ++e+
  KIR63059.1   9 VVDFGAQYAQLIARRVREARVYSEIVPHSMPVAEM--LAKDPAAIILSGGPASVYAPDAPQVDAGMFDAGVPVFGICYGFQAMAQALGGTVARTGNREY 105
                 89*******************************99..589*********************************************************** PP

                 EEEEEEEEETTT.CGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHHHH CS
      GATase 101 hggtmrlgddet.allyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnflik 189
                  g   r + +e   ll++l+ ++ ++++H+++v++    pag+ vta+s+    ++++  +  +  gvQFHPE+ +t +g+e+l +fl++
  KIR63059.1 106 GGTPLRPRLTEPgVLLRDLPADLPVWMSHGDCVTE---APAGFAVTAESAGA-PVAAFEDLAGRRAGVQFHPEVGHTAHGQEMLTRFLYD 191
                 ****999997667999*******************...***********655.67777777779*********************99875 PP

>> GMP_synt_C  GMP synthase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0   3.9e-40   7.1e-37       1      92 []     425     517 ..     425     517 .. 0.97

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 3.9e-40
                 CCCCTTT-GGGSSEEEEEEEE.EEE----------EEEEEEEEE---------B----HHHHHHHHHHHHHHSTT---EEEE---TTTS-S-- CS
  GMP_synt_C   1 eelkkaglykkiwQafavllp.vksvGvmgdkRtyeyvvalRaveseDamtadvaelpyevLekissrivnevkgvnrvvyditskPpatiEw 92 
                 eel++agl++ +wQ  +vll  v+svGv+gd R+y++ v+lR v+seDamtad+++lpyev+++is+ri+nev +vnrvv+d+tskPp+tiEw
  KIR63059.1 425 EELTAAGLDRGVWQFPVVLLAdVRSVGVQGDGRSYGHPVVLRPVSSEDAMTADWSRLPYEVVARISTRITNEVAEVNRVVLDVTSKPPGTIEW 517
                 7999***********9998754*********************************************************************** PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   1.7e-12   3.1e-09     102     216 .]      73     174 ..      68     174 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 1.7e-12
  Peptidase_C26 102 lergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaikelaeelrveAvaeDgviE 197
                     ++gvP++giC G+q ++ alGGt+++  +++ g t           +   +e+g ll +l    +  v   H  +++e   ++ v+A ++   + 
     KIR63059.1  73 FDAGVPVFGICYGFQAMAQALGGTVARTGNREYGGTP---------LRPRLTEPGVLLRDLPA--DLPVWMSHGDCVTEAPAGFAVTAESAGAPVA 157
                    6789*********************999996555443.........33345789999999988..999**************************** PP

  Peptidase_C26 198 aieseeakafvlgvQwHPE 216
                    a+e  +      gvQ+HPE
     KIR63059.1 158 AFEDLA--GRRAGVQFHPE 174
                    **9988..4589******9 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.1   1.6e-09   2.8e-06      15      49 ..     215     248 ..     202     298 .. 0.75
   2 !    7.7   0.0   0.00097       1.7     148     177 ..     365     394 ..     359     417 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.6e-09
                   HCTTSEEEEEE-SSHHHHHHHHHHHHHHTCGEEEE CS
  NAD_synthase  15 kagakgvvlGlSGGvDSslvaalavkalgkenvla 49 
                   + g k+v+ GlSGGvDS+++aal  ka+g++  + 
    KIR63059.1 215 QVGDKEVICGLSGGVDSAVAAALVHKAVGDQ-LTC 248
                   456799**********************765.444 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00097
                   BETTTTS-HHHHHHHHHHTT--HHHHCS-- CS
  NAD_synthase 148 lapiaellKtevkeLakelnvPervlkkpP 177
                   ++p+  l+K ev++L  +l+ Pe ++ ++P
    KIR63059.1 365 VEPLRTLFKDEVRTLGLQLGLPEAMVWRHP 394
                   68**********************999987 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   5.3e-08   9.6e-05       2      32 ..     220     251 ..     219     287 .. 0.76
   2 ?   -3.7   0.0       2.2   3.9e+03     166     186 ..     366     386 ..     363     388 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.3e-08
  tRNA_Me_trans   2 kvvvalSgGVDSsvaaallkeq.gyevigvfl 32 
                    +v+++lSgGVDS+vaaal++++ g +++ vf+
     KIR63059.1 220 EVICGLSGGVDSAVAAALVHKAvGDQLTCVFV 251
                    79*****************9872466666665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.2
  tRNA_Me_trans 166 fPlgeltKeevrkiAkeagla 186
                     Pl +l K+evr +  + gl+
     KIR63059.1 366 EPLRTLFKDEVRTLGLQLGLP 386
                    5999********999888875 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.5e-05     0.027       2      61 ..     221     281 ..     220     308 .. 0.79
   2 ?    2.7   0.0     0.043        77     142     177 ..     352     387 ..     325     392 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
                 EEEE--SSHHHHHHHHHHHHH.-SEEEEEEEESS-TTSHHHH.HHHHHHHHT--.-EEEEE- CS
        QueC   2 avvllSGGlDSttvlalakke.gkevealtfdYgqrhkkele.aakkiakelgveehkildl 61 
                 +++ lSGG+DS++++al++k+ g++++++ +d g  ++ e e + k+ ++++g+ + k++d 
  KIR63059.1 221 VICGLSGGVDSAVAAALVHKAvGDQLTCVFVDHGLLRAGEAEqVEKDYVAATGI-KLKVVDA 281
                 6889*********99988776269**********98776665155678888888.8888886 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.043
                 HHHHHH...HTS--EEE-TTTT--HHHHHHHHHHTTHHH CS
        QueC 142 kalnlg...edkkieieaPlidlsKaeivklgkelgvpl 177
                 ++   g   ed k+ ++ Pl +l K e+  lg +lg+p 
  KIR63059.1 352 NV---GglpEDLKFALVEPLRTLFKDEVRTLGLQLGLPE 387
                 33...344488999**********************875 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.7e-06    0.0049       4     108 ..     219     318 ..     216     337 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.7e-06
        ThiI   4 gkvlaLlSgGiDSpVaaylllkR.Gcrvvlvhlknepgtseeaiekveklaellaeyqtslevklvvvdfkev.lkeilekvkekltivllkrkmlriA 100
                  +v++ lSgG+DS Vaa l+ k  G +  +v+++  +  + ea++ ve       +y +++ +kl vvd  +  l  +   ++++++  ++ r ++r+ 
  KIR63059.1 219 KEVICGLSGGVDSAVAAALVHKAvGDQLTCVFVDHGLLRAGEAEQ-VE------KDYVAATGIKLKVVDAADRfLGALAGVTDPEQKRKIIGREFIRVF 310
                 57999**************99854999999999765555555543.33......366666778999998876514555555555555555666677765 PP

        ThiI 101 ekvaeeeg 108
                 e  a+e  
  KIR63059.1 311 EAAAREIA 318
                 55555443 PP

>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     4e-06    0.0072       2      65 ..     221     280 ..     220     317 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4e-06
                 EEEE--SCHHHHHHHHHHHHHCTTTTTEEEEEEEE-SSSTCHHHHHHHHHHHHHHTT-EEEEEE CS
  ATP_bind_3   2 vlvAvSgGlDSmaLllllaklkkklgiklvaihvdhglreeskeeaelvkelckklnikleiek 65 
                 v+ ++SgG+DS +   l++k     g +l+++ vdhgl    +  +++ k++++  +ikl++ +
  KIR63059.1 221 VICGLSGGVDSAVAAALVHKAV---GDQLTCVFVDHGLLRAGE-AEQVEKDYVAATGIKLKVVD 280
                 6889*********999999984...459*********986554.45666888888888887765 PP

>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.1e-05      0.02      13      50 ..     214     251 ..     204     278 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.1e-05
  Asn_synthase  13 rlradvpvGalLSGGlDSSliaalaarqsksplktFsi 50 
                     ++d +v + LSGG+DS++ aal  +    +l+++ +
    KIR63059.1 214 AQVGDKEVICGLSGGVDSAVAAALVHKAVGDQLTCVFV 251
                   4489********************99988777766655 PP

>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.3e-05     0.095       3      69 ..     222     290 ..     220     326 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.3e-05
                  EEE--SSCTCHHHHHHHHHHCTTH.EEEEEE-STB-H.HHHHHHHHHHHHTT-EEEEEE-SCHHHHHHH CS
  PAPS_reduct   3 vvsvsgGkdslVllhLalkafkpv.pvvfvdtghefp.etiefvdeleeryglrlkvyepeeevaekin 69 
                  +   sgG ds+V   L+ ka  +  + vfvd g     e  +  ++ +   g++lkv++  +++  +++
   KIR63059.1 222 ICGLSGGVDSAVAAALVHKAVGDQlTCVFVDHGLLRAgEAEQVEKDYVAATGIKLKVVDAADRFLGALA 290
                  5668*****************99549*******875426777777788888999999988887665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 3271.11
//
Query:       KIR63060.1  [L=88]
Description: phage-shock protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-19   69.4   0.1      2e-19   69.2   0.1    1.1  1  PspC      PspC domain


Domain annotation for each model (and alignments):
>> PspC  PspC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.1   1.1e-23     2e-19       1      53 []      11      69 ..      11      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 1.1e-23
        PspC  1 krLyRspdnkvlgGVcaGlAeyfgvdptlvRlifvlll......glllYiilwiilPea 53
                k+L R +++++++GV++Gl++yf vdptlvR++f++++        l+Y i+w+++Pe+
  KIR63060.1 11 KQLRRPTTDRMVAGVASGLGRYFAVDPTLVRVLFAVATlatagvAALAYPIMWFLMPEE 69
                89*********************************9998888666688*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 641.09
//
Query:       KIR63061.1  [L=315]
Description: NUDIX hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-36  123.0   0.2    4.8e-18   65.5   0.1    2.1  2  NUDIX     NUDIX domain
    4.3e-07   29.9   0.0      0.011   15.7   0.0    3.3  2  NUDIX_4   NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   5.5e-19     5e-15       2     123 ..       9     133 ..       8     139 .. 0.78
   2 !   65.5   0.1   5.4e-22   4.8e-18       3     116 ..     172     296 ..     170     310 .. 0.77

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 5.5e-19
                 EEEEEEEEEEETTSEEEEEEES.SSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.EEECSGCS CS
       NUDIX   2 lrravgvvllnekgevLlvrrs.kkpfpg.WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfl.eevegele 97 
                 +r a+ +v  ++ g+vLlvr s ++ +pg W+lPgG v+ gE+p  +++RE++ EtGl++    l ++l +++  +++  + h   ++++     g+l+
  KIR63061.1   9 RRIAAYAVCADSVGRVLLVRASeRSGTPGtWSLPGGAVDHGEDPNHTVVRETAAETGLSVAVSGLDDVLADMRALPERGITIHTDRLIYRvSVRGGTLT 107
                 7899****************9987777778***************************988666555555566666666666555556777566666766 PP

                 STSTTTEEEEEEEEHHHHHHHHTHCT CS
       NUDIX  98 pndenevsevrwvpleellkeklaae 123
                  + +  ++ +rwv+++e+ + +l+a+
  KIR63061.1 108 DRVDRPTDLARWVTPTEARELPLRAF 133
                 66777778889*******55555544 PP

  == domain 2  score: 65.5 bits;  conditional E-value: 5.4e-22
                 EEEEEEEEEETTSEEEEEEES.SSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEE.EEEEEEEEEEEEEE.EEEEEEEEE..EEECSG CS
       NUDIX   3 rravgvvllnekgevLlvrrs.kkpfpg.WelPgGkvepgEtpeeAArREleEEtGleaellellg.rlhylapydgpygd.eheilyvfl..eevege 95 
                 r a+ +v ++++g+vLl+r s ++p +g W+lPgG+ ++gE p +A++REl EEtG + +l+ellg   h  a + gp g   +++ +  +    v+  
  KIR63061.1 172 RFAAYAVATDPDGRVLLTRVSdGYPGAGcWHLPGGGTDYGEQPGAALIRELVEETGQRGRLVELLGvASHRDAASLGPEGYpIDWHGVRAFyrVMVDQP 270
                 67999**************998888888****************************777*******666777777777777844444333333333333 PP

                 CSST...STTTEEEEEEEEHHHH..H CS
       NUDIX  96 lepn...denevsevrwvpleel..l 116
                  +p+     + + e+rw+  eel  l
  KIR63061.1 271 APPTvtdVGGSTCEARWFAREELgaL 296
                 33334558999************531 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.2e-06     0.011       1     107 [.      13     137 ..      13     140 .. 0.64
   2 !    9.4   0.0   0.00011      0.99       2      48 ..     176     227 ..     175     308 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.2e-06
                 EEEEEEEC.TEEEEEE--TTSSSTT-EE-SEEE.-TTS-HHHHHH...HHHHS-EEE......EEEEEEEEEEETTEEEEEEEEEE............. CS
     NUDIX_4   1 avllirdd.grvllekRpekgllggLwefPgge.eegeeleeala...reelgieve......elepgtvkHvftHfrltltvylv............. 75 
                 a+++ +d  grvll +  e+    g w++Pgg    ge++++ ++   + e+g++v        l+ +     +  + +t++  ++             
  KIR63061.1  13 AYAVCADSvGRVLLVRASERSGTPGTWSLPGGAvDHGEDPNHTVVretAAETGLSVAvsglddVLADM---RALPERGITIHTDRLiyrvsvrggtltd 108
                 578888999*********************99976688866555434433566643344444322223...3666665555533333544445554444 PP

                 EEE.S..---.EEEEEEGGGGGGS---CCCHCC CS
     NUDIX_4  76 rveegeeapa.elrwvtpeeleeyalptavrkl 107
                 rv++     +   rwvtp e  e++l +   ++
  KIR63061.1 109 RVDRP----TdLARWVTPTEARELPLRAFTARA 137
                 44433....2568*********99998776665 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00011
                 EEEEEEC.TEEEEEE--TTSSSTT-EE-SEEE.-TTS-HHHHHH...HHHHS CS
     NUDIX_4   2 vllirdd.grvllekRpekgllggLwefPgge.eegeeleeala...reelg 48 
                 +++  d+ grvll++  +    +g w +Pgg    ge++ +al+    ee+g
  KIR63061.1 176 YAVATDPdGRVLLTRVSDGYPGAGCWHLPGGGtDYGEQPGAALIrelVEETG 227
                 67777778*********999*********87756687777777722222333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2266.96
//
Query:       KIR63062.1  [L=306]
Description: CDP-alcohol phosphatidyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-12   46.6   3.5    4.4e-12   46.6   3.5    2.7  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   3.5   2.5e-16   4.4e-12       3      66 .]      96     158 ..      94     158 .. 0.87
   2 ?   -0.9   1.9      0.17     3e+03       5       5 ..     236     236 ..     161     294 .. 0.65

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 2.5e-16
                      HHHHHHHHHHHHHHHHHGGGS-H..HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf   3 PnaiTllrlllsvlailllltyyplvlailllliasltDalDGklARrlnqvstlGkllDslaD 66 
                       na Tl++l+l++ ai++  +  ++ la+lll++ + +D+lDG lARr++  s +G+++DslaD
       KIR63062.1  96 VNACTLASLVLGINAIFVA-MQGQVRLAALLLIACVAFDGLDGALARRFGVASPFGAQMDSLAD 158
                      69*************9644.444478899888888999***********99888*********9 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.17
                      H CS
  CDP-OH_P_transf   5 a 5  
                      +
       KIR63062.1 236 L 236
                      1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2086.08
//
Query:       KIR63063.1  [L=417]
Description: phosphatidylserine decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-23   81.6   0.2    5.3e-22   78.4   0.2    2.1  1  PS_Dcarbxylase  Phosphatidylserine decarboxylase
  ------ inclusion threshold ------
       0.16   12.2   0.2       0.38   11.0   0.2    1.6  1  TAT_ubiq        Aminotransferase ubiquitination site


Domain annotation for each model (and alignments):
>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.2   5.9e-26   5.3e-22       7     199 ..     251     413 ..     248     414 .. 0.92

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 5.9e-26
  PS_Dcarbxylase   7 rklkdgaRpidddpgaivsPaDgrilqigeieegsviqvKgityslrdLlgeasessadsfkngyfvviyLspgdyHryhaPvsgkveerrhipG 101
                      +++d++R +++dp+a+v+ aDg +l+++++++++                           +   v ++Ls+ d+H++++Pv+gkv++    +G
      KIR63063.1 251 AFFRDPQRDVPEDPSAVVAAADGQVLSVQRLHDERFGD-----------------------GEWLRVAVFLSVLDVHVNRSPVAGKVVDYFVADG 322
                     689*************************9999954422.......................27899***************************** PP

  PS_Dcarbxylase 102 ellsvnpsalkelrglftlneRvvlview.kGkvavvpvGatnvgsivlnvlkgdelkkGeelGyFqfGStvvlvfeagkfieslvekgqkvkmG 195
                      ++++ + +++++          ++v+++ +G+v+v +  ++++++iv+++  g  l +Ge++G+++fGS+++++++a+   ++lv +g++v  G
      KIR63063.1 323 GFVNAMKPDAEHN-------VAAYTVLDTdHGTVVVAQRTGLIARRIVQRAPIGSLLARGERFGLIRFGSRTDVYLPAD-AADPLVGPGDRVVGG 409
                     **99988888888.......77788888448***********************************************9.889************ PP

  PS_Dcarbxylase 196 eklg 199
                     ++++
      KIR63063.1 410 STVI 413
                     9986 PP

>> TAT_ubiq  Aminotransferase ubiquitination site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   4.3e-05      0.38      14      33 ..     297     313 ..     295     314 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.3e-05
    TAT_ubiq  14 lpsVLDvhVnvhGkspvpgK 33 
                 + sVLDvhVn   +spv gK
  KIR63063.1 297 FLSVLDVHVN---RSPVAGK 313
                 679*******...6777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2701.03
//
Query:       KIR63064.1  [L=609]
Description: phage-shock protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-12   47.2   2.8    1.4e-12   47.2   2.8    2.0  2  PspC      PspC domain
    2.6e-10   40.2   0.0    4.4e-10   39.5   0.0    1.4  1  DUF2154   Cell wall-active antibiotics response 4TMS YvqF
    1.7e-06   28.8   0.0       0.11   13.2   0.0    3.1  2  Pex14_N   Peroxisomal membrane anchor protein (Pex14p) conser


Domain annotation for each model (and alignments):
>> PspC  PspC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   2.8   2.3e-16   1.4e-12       3      52 ..     120     174 ..     119     175 .. 0.95
   2 ?   -2.6   0.4      0.82   4.9e+03      38      48 ..     430     448 ..     415     451 .. 0.51

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 2.3e-16
        PspC   3 LyRspdnkvlgGVcaGlAeyfgvdptlvRlifvlll.....glllYiilwiilPe 52 
                 L+R +++++l+GVca +++  + dp+l+R+++++l      g+l+Y+ +w+i+P 
  KIR63064.1 120 LVRPREGRYLAGVCAAIGRATNTDPVLWRVLLAVLGffggiGILVYVTAWLIIPG 174
                 89*****************************8888889*99*************5 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.82
        PspC  38 l........glllYiilwi 48 
                 l        g  +Y+++++
  KIR63064.1 430 LdlldvvevGAAAYFAAAL 448
                 1333434444445887776 PP

>> DUF2154  Cell wall-active antibiotics response 4TMS YvqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   7.3e-14   4.4e-10      19     114 .]     511     607 ..     495     607 .. 0.89

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 7.3e-14
     DUF2154  19 issiiGdttiDLtkavlpegetvivirkliGdvkilVPedvevsveasvifGdvkvldekeagllneslkleseeyeea.ekkvkiivslliGdveV 114
                 + + +Gd ++DL+  +  ++et i +   +G+ +++VP +v+v+  a v +Gd+++++++++ l  +  ++++   +     k++++v++ +Gd+eV
  KIR63064.1 511 YENNFGDAVLDLRAIDFDKQETQITVAINFGKATVVVPPNVDVTTIADVNAGDATIFGNRSGALDGRLREITDLGADGPgGGKLRLYVHVNAGDLEV 607
                 66789*********************************************************88777777777766665579*************98 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.8e-05      0.11      67     149 ..      48     168 ..       3     173 .. 0.70
   2 !   10.7   1.5   0.00011      0.64      79     127 ..     354     451 ..     316     487 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.8e-05
     Pex14_N  67 qeesasssatpqpqaasqtsqs.spspsppaqqqqqqy..........rpPivtypefltkppkppppPlr............................ 126
                 +  + +++atp p+ ++ ++   +p+p+ p++  ++++           pP + y      +++ppppP+                             
  KIR63064.1  48 APGDPEATATPGPPGQTGQAPGgWPPPQ-PPGRGAPPPppggdgpgagGPPPGGY------AAPPPPPPEGagftsryglvrpregrylagvcaaigra 139
                 3333333344433333333222033333.33333333346888888888999999......56667777779*************************** PP

     Pex14_N 127 ......twrdllitatalaglgaglygls 149
                        wr ll +++ ++g+g ++y ++
  KIR63064.1 140 tntdpvLWRVLLAVLGFFGGIGILVYVTA 168
                 **************************886 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00011
     Pex14_N  79 pqaasqtsqsspspsppaqqqqqqyrpPivtypefltkppkppppPlr.................................................t 127
                 p+  s++ + +p+ +ppa+   ++++ P + y +  +++p++pppP r                                                  
  KIR63064.1 354 PPVGSPSPTGHPPVTPPAPPGYRPPFAPHGPYAQGPQPAPAAPPPPARppkrprersplgavtfsliflalgvvavldlldvvevgaaayfaaalatI 451
                 2222222222222223444444444889999999999988889999889999*******999666666666666666666666554444444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.50
# Mc/sec: 3697.64
//
Query:       KIR63065.1  [L=412]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-15   55.7   1.9    7.8e-15   54.4   1.9    1.8  1  PspC         PspC domain
    1.5e-06   28.2   1.8    1.5e-06   28.1   0.4    1.8  2  HATPase_c_2  Histidine kinase-like ATPase domain
    1.7e-06   28.5   0.0    4.1e-06   27.3   0.0    1.7  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> PspC  PspC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   1.9   1.3e-18   7.8e-15       2      52 ..       6      61 ..       5      62 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 1.3e-18
        PspC  2 rLyRspdnkvlgGVcaGlAeyfgvdptlvRlifvlll.....glllYiilwiilPe 52
                rLyR p++++ +GV+aG+Ae++g++++ vR++f++ll     glllY + w ++P 
  KIR63065.1  6 RLYRAPEHRMAAGVAAGIAEHLGISVVRVRIAFMVLLglsglGLLLYAAFWAVVPL 61
                8************************************9**9999**********95 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.1   6.6e+03      97     108 ..      44      55 ..      41      60 .. 0.81
   2 !   28.1   0.4   2.6e-10   1.5e-06      25      88 ..     307     366 ..     273     393 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.1
  HATPase_c_2  97 egGrGlalikgl 108
                   +G+Gl+l +++
   KIR63065.1  44 LSGLGLLLYAAF 55 
                  68*****99876 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 2.6e-10
  HATPase_c_2  25 seelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpte 88 
                  ++e++  +  a+ Ea++Na +ha       +v++ +e+++e++ v v+D+G+gfdp t +d+  
   KIR63065.1 307 TDERVGALVAAAREALVNAARHAGV----RTVSLYAEVEPEQVSVFVRDRGKGFDPDTVEDHRH 366
                  5566779999**************7....89**************************9998765 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   6.9e-10   4.1e-06       6     110 ..     314     401 ..     309     403 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 6.9e-10
                 HHHHHHHHHHHHHHHHS.TTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEE CS
   HATPase_c   6 LrqiisnlvdNavkfat.kageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGtt 103
                 L  + ++++ Na+++a+  + ++  e++   +++++ v+D G+G +++ ++      +          ++G+  siv ++ + +gG+ +++sepg+Gt+
  KIR63065.1 314 LVAAAREALVNAARHAGvRTVSLYAEVE--PEQVSVFVRDRGKGFDPDTVE------D---------HRHGVRGSIVGRMRR-HGGRAEIRSEPGEGTE 394
                 66677999******95433334444444..469****************99......3.........5899999****9999.**************** PP

                 EEEEEES CS
   HATPase_c 104 ftftlpl 110
                 +++ lp 
  KIR63065.1 395 VRLILPI 401
                 ***9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       965  (0.0538234); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 2789.35
//
Query:       KIR63066.1  [L=228]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-21   74.4   0.0    1.2e-20   73.7   0.0    1.3  1  Response_reg     Response regulator receiver domain
    1.9e-20   72.1   0.3    3.4e-20   71.3   0.3    1.4  1  GerE             Bacterial regulatory proteins, luxR family
    4.4e-08   32.7   0.6    8.2e-08   31.8   0.6    1.4  1  Sigma70_r4_2     Sigma-70, region 4
    3.8e-06   26.3   0.9    7.4e-06   25.4   0.9    1.5  1  Sigma70_r4       Sigma-70, region 4
     0.0015   18.6   0.2     0.0029   17.7   0.2    1.4  1  Trp_repressor    Trp repressor protein
     0.0021   17.8   0.5      0.037   13.8   0.5    2.4  1  HTH_10           HTH DNA binding domain
     0.0041   16.8   1.3      0.014   15.2   0.1    2.2  2  HTH_38           Helix-turn-helix domain
     0.0046   17.4   0.1      0.011   16.1   0.1    1.7  1  HTH_40           Helix-turn-helix domain
      0.005   16.9   0.0      0.021   14.9   0.1    2.0  2  HTH_7            Helix-turn-helix domain of resolvase
     0.0066   16.2   0.1      0.023   14.5   0.1    2.0  1  HTH_23           Homeodomain-like domain
  ------ inclusion threshold ------
      0.012   15.2   0.1      0.029   13.9   0.1    1.7  1  HTH_24           Winged helix-turn-helix DNA-binding
      0.022   14.9   0.4      0.089   12.9   0.1    2.2  2  HTH_28           Helix-turn-helix domain
      0.026   14.1   0.0      0.049   13.2   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
      0.041   13.9   0.0      0.067   13.2   0.0    1.3  1  DUF2089          Protein of unknown function (DUF2089)
       0.06   13.1   0.5        0.1   12.3   0.5    1.4  1  TadZ_N           Pilus assembly protein TadZ N-terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.0     1e-23   1.2e-20       1     112 []      21     131 ..      21     131 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 1e-23
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   v++vdD+ ++r+++r  l   ++ +v+ea + +ea++ + ++ +d++llD+ mp+  G  +l+ +r+ +p+++ ++l+  ++ ed++  ++aga ++
    KIR63066.1  21 VFLVDDHAMFRAGVRAELG-VHVDVVGEAGTVAEAVARIAASVPDVVLLDVHMPDGGGRAVLEAMRRSHPQVRFLALSVSDAAEDVIGLIRAGARGY 116
                   89*****************.55558************************************************************************ PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   ++K ++p+eL +a++
    KIR63066.1 117 VTKTISPDELAAAIR 131
                   ***********9985 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.3   2.8e-23   3.4e-20       2      57 .]     167     222 ..     166     222 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 2.8e-23
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 +L++RErevLrlla G+  keIA+el iS kTV++h+sn+++KL+  +r el r+a
  KIR63066.1 167 QLTNREREVLRLLARGYAYKEIAKELYISIKTVETHVSNVLRKLQMSNRYELSRWA 222
                 7**************************************************99886 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.6   6.9e-11   8.2e-08       8      54 .]     165     210 ..     164     210 .. 0.96

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 6.9e-11
                   HTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   8 laeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   l++L+ r+re++ l    g+ ykEIA++l is +tV++++s  ++kL
    KIR63066.1 165 LDQLTNREREVLRL-LARGYAYKEIAKELYISIKTVETHVSNVLRKL 210
                   79************.68**************************9998 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.9   6.2e-09   7.4e-06       2      49 ..     165     211 ..     165     212 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 6.2e-09
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLR 49 
                 L++L+ rerevl+l   +g+ ++EI+++l iS  +V  + ++ lrkL+
  KIR63066.1 165 LDQLTNREREVLRLLA-RGYAYKEIAKELYISIKTVETHVSNVLRKLQ 211
                 89**********9975.7777*************************96 PP

>> Trp_repressor  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   2.5e-06    0.0029      31      77 ..     164     211 ..     160     220 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.5e-06
  Trp_repressor  31 ErealaqRlqvvkeLLkeelsqreIaeelgvSiAtI.tRvsrsLktgs 77 
                    E+++l++R + v +LL  ++ ++eIa+el +Si t+ t vs+ L++ +
     KIR63066.1 164 ELDQLTNREREVLRLLARGYAYKEIAKELYISIKTVeTHVSNVLRKLQ 211
                    89999999875555*******************999889999998654 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.5   3.1e-05     0.037      22      51 ..     181     210 ..     168     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.1e-05
      HTH_10  22 RrvtlkeLAkelGIskstlsehLrkaeskl 51 
                 R    ke+Akel Is  t++ h++++ +kl
  KIR63066.1 181 RGYAYKEIAKELYISIKTVETHVSNVLRKL 210
                 556789**********************98 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.1e-05     0.014       4      38 ..     167     200 ..     166     205 .. 0.85
   2 ?   -0.1   0.1      0.67     8e+02       3      17 ..     208     222 ..     207     225 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-05
      HTH_38   4 hLsleeReeIerllaeGlslreIArrLgrspsTIs 38 
                 +L+  eR e  rlla+G+ ++eIA++L  s  T+ 
  KIR63066.1 167 QLTNRER-EVLRLLARGYAYKEIAKELYISIKTVE 200
                 7999999.888***************987777776 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.67
      HTH_38   3 khLsleeReeIerll 17 
                 ++L  ++R+e+ r+ 
  KIR63066.1 208 RKLQMSNRYELSRWA 222
                 68999******9996 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   9.6e-06     0.011       4      40 ..     174     210 ..     171     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9.6e-06
      HTH_40   4 etlelleeglsieeIAkerglkesTIegHLaelieeg 40 
                 e l+ll  g+  +eIAke  ++ +T+e+H+ + +++ 
  KIR63066.1 174 EVLRLLARGYAYKEIAKELYISIKTVETHVSNVLRKL 210
                 6789**************************9988874 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.8   3.4e+03       5      22 ..     120     137 ..     119     139 .. 0.81
   2 !   14.9   0.1   1.7e-05     0.021      12      38 ..     173     199 ..     167     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.8
                 SS-HHHHGGGGSSTTTT- CS
       HTH_7   5 klskndinrvvkLleeGi 22 
                 ++s+++++ +++++++G 
  KIR63066.1 120 TISPDELAAAIRRVADGD 137
                 688999999999999995 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.7e-05
                 GGGGSSTTTT--STTTSSSS---SSSS CS
       HTH_7  12 nrvvkLleeGisiskIAkevnisRsTv 38 
                  +v++Ll+ G++ ++IAke+ is  Tv
  KIR63066.1 173 REVLRLLARGYAYKEIAKELYISIKTV 199
                 69*********************9887 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.9e-05     0.023       9      35 ..     174     200 ..     169     209 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.9e-05
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTvy 35 
                 ++l+lla+G+ ++eIA+eL +s  Tv 
  KIR63066.1 174 EVLRLLARGYAYKEIAKELYISIKTVE 200
                 69**********************997 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.4e-05     0.029       5      40 ..     172     205 ..     168     209 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.4e-05
      HTH_24   5 drkILelLqknprisqreLAerlglSpstvnrrlkr 40 
                 +r++L+lL +  +  ++e+A++l +S+ tv +++ +
  KIR63066.1 172 EREVLRLLAR--GYAYKEIAKELYISIKTVETHVSN 205
                 6777777777..8889*****************976 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         5   5.9e+03       4      14 ..     128     138 ..     127     139 .. 0.79
   2 ?   12.9   0.1   7.4e-05     0.089       4      31 ..     174     201 ..     173     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5
      HTH_28   4 eiikllaaGhs 14 
                  +i+++a+G++
  KIR63066.1 128 AAIRRVADGDA 138
                 68999999975 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 7.4e-05
      HTH_28   4 eiikllaaGhsvreaArelgisrrtvyr 31 
                 e+++lla+G +++e+A+el is  tv  
  KIR63066.1 174 EVLRLLARGYAYKEIAKELYISIKTVET 201
                 89*******************9999976 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.1e-05     0.049      70     156 ..      37     134 ..      34     139 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.1e-05
                      CTTCGGGEEECCH.SSSHHHHHHC..ESEEEEEESS.BSS-HHHHHHHHTT--EE......EET.TTTHCHHCHTTTSEEEE-TT-HHHHHHHH CS
  Glycos_transf_1  70 elsdnviflgevs.redleellkn..adifvlpsis.EgfGivllEAmaaglpvi......asn.aggpaevvkdgetGllvkpnnaealaeai 152
                      el+ +v ++ge   + +  + + +   d+++l  ++ +g G ++lEAm    p +      +s+ a+ +  +++ g  G++ k+ ++++la+ai
       KIR63066.1  37 ELGVHVDVVGEAGtVAEAVARIAAsvPDVVLLDVHMpDGGGRAVLEAMRRSHPQVrflalsVSDaAEDVIGLIRAGARGYVTKTISPDELAAAI 130
                      6777888888887544444434435779999999999**************99885554445556666666777777***************** PP

                      HHHH CS
  Glycos_transf_1 153 rkll 156
                      r++ 
       KIR63066.1 131 RRVA 134
                      9985 PP

>> DUF2089  Protein of unknown function (DUF2089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.6e-05     0.067      30      83 ..     164     216 ..     158     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.6e-05
     DUF2089  30 efarLskeqlefvelfikarGnlkevekelgisYpTvrnrldeileaLgyeeee 83 
                 e+++L++ + e ++l+ +     ke++kel is  Tv +++ ++l++L+++++ 
  KIR63066.1 164 ELDQLTNREREVLRLLARG-YAYKEIAKELYISIKTVETHVSNVLRKLQMSNRY 216
                 6788888888888876543.368**************************99875 PP

>> TadZ_N  Pilus assembly protein TadZ N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   8.5e-05       0.1      65     120 ..      79     134 ..      41     142 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.5e-05
                 HHHHHHHHH-TT-EEEEEE-TT-HHHHHHHHHHT-SEEEETT-BHHHHHHHHHHHH CS
      TadZ_N  65 alveglvsarpmlsvvaigdgldnqlvlaamragardfitygaraseltglirrlg 120
                 a++e +  + p +  +a+      + v+  +ragar ++t      el+  irr+ 
  KIR63066.1  79 AVLEAMRRSHPQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPDELAAAIRRVA 134
                 67788888888888888888888888999*************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1507.10
//
Query:       KIR63067.1  [L=546]
Description: peptide ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-61  208.6  10.1    1.6e-61  208.3  10.1    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.3  10.1   9.1e-66   1.6e-61       2     375 ..      83     468 ..      82     470 .. 0.94

  Alignments for each domain:
  == domain 1  score: 208.3 bits;  conditional E-value: 9.1e-66
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHC.........................TCTEEEEEEEET CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyasllee.........................dqdikkveavdd 75 
                 ++ aLAes+ e ++D k+y++k++++ kF+DGt + A+ +v ++++ +  +++++++s++++                          ++  + ++vdd
  KIR63067.1  83 PQNALAESI-E-TTDSKVYKIKIKQDTKFHDGTVVKAKNFVDAWNWGAYSPNGAQNSSFFADiegfadvntadpdgpegpqkapepkAKEMSGLKVVDD 179
                 5789****6.5.8***********************************************99************************************* PP

                 TEEEEEESSETTTTTTHCHHHHHHHGCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTS CS
   SBP_bac_5  76 ytvrftlkkpnalfltllaavpasiakkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGe 174
                   +++tl++p+a f+t l      +    ++  + + +++ +kp+g+GP k+++++ + +i+l+r++dY  ++k k++ +++k+++d++a+   l sG+
  KIR63067.1 180 WNFEVTLSAPTAVFPTKLGYSTFMPL--PDAFFSGSAEEFGKKPIGNGPVKFVSWENNVQIKLTRFDDYQLRDKMKIKDVTVKMYQDDTAAYSDLVSGN 276
                 ************99999999999888..566677889********************************778*************************** PP

                 SSEEESTTCCTHCHHHHHTTEEE.EEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHH CS
   SBP_bac_5 175 iddvaepppsdieqlkeakglkv.lyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydp 272
                 +d+++++p s ++  k +++l+   ++s++++++ +af  + + f+++++R+A+s+ i+r+ei ++++ g  +pa+s   p  pga + + +a + +++
  KIR63067.1 277 LDFMQQVPVSALAGDKWKSDLTDrAISSTTPSTGIIAFPIYDKRFQNPKLRRAISLSINRQEITDKIFFGNRKPADSWANPLTPGAAPGNCTACQ-FNV 374
                 ***************9999999999*****************************************************************99986.8** PP

                 HHHHHHHHHTT-BCSSTSCEETCEEEEEEEEETTSHHHHHHHHHHHHHHHH.TTEEEEEEEE.CHHHHHHHH.HHCTTESEEEEEEECTTSTTHHHHHH CS
   SBP_bac_5 273 ekAkklLkeaGykdgdggglrekklkltlllasgspaekaiaeliqqqlkk.iGikvevktv.dwaatyler.vkdgdfdmillgwgadypdpdnflnp 368
                 ++AkklL+eaG   g            ++++++ ++ +k+++e+++qq k  +Gi+++ ++v  + a++ +  +  +   ++  gw +dypd +n +np
  KIR63067.1 375 DEAKKLLAEAGGFSG-----------ELVMYYNADASHKEWMEAVAQQVKTnLGINARAEGVpTF-AVFRQNiNAHKMKGAYRAGWQQDYPDVENWVNP 461
                 ***********9988...........89**********************99**********666.55555505555567999**************** PP

                 HHSTTCT CS
   SBP_bac_5 369 flsssga 375
                 ++ ++g+
  KIR63067.1 462 LYVTGGS 468
                 9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3502.92
//
Query:       KIR63068.1  [L=308]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-32  111.4  13.9    4.3e-32  111.4  13.9    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.028   14.7   0.1      0.047   14.0   0.1    1.4  1  Gp_dh_N       Glyceraldehyde 3-phosphate dehydrogenase, NAD b


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3      0.18   1.6e+03      26      45 ..       9      28 ..       4      70 .. 0.72
   2 !  111.4  13.9   4.7e-36   4.3e-32       1     185 []     113     307 ..     113     307 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.18
  BPD_transp_1 26 vllslPsfvlaillvlvfvi 45
                  +l+ +P+f+   +l++++v+
    KIR63068.1  9 LLQLVPVFIGTTFLIYWLVW 28
                  67889999977777766532 PP

  == domain 2  score: 111.4 bits;  conditional E-value: 4.7e-36
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf...........vilsilghlilpviillllsaapyvrlirraalrslpkdlvea 86 
                   g+ +G+l++l+rn++ld+l+++ + +l +lP+fv++++l++++           +    l  l lp+++l+  s+a ++r+ r ++ +++  d+v++
    KIR63068.1 113 GLSAGVLTGLRRNGFLDNLVLVSTLFLIALPVFVVGFVLQWLLgvkwgivhptvSSEMRLSELLLPGFVLGSASMAYVARVARTSIAENRRADYVRT 209
                   6789************************************999*********99666688899********************************** PP

  BPD_transp_1  87 aralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   a a+G++ ++++  ++l+n+l+p++t+l+  +g+l+gga+++e +++ +G+g+ +l+ai  +  +     +v++lv+++ll+nl++d+l+++ldpr+
    KIR63068.1 210 AIAKGLPMRRVVGVHLLRNSLIPVVTLLGTDLGALMGGAIVTEGIFGINGIGRAVLRAIVTKESATVV-SIVVVLVLVYLLMNLLVDLLYAALDPRI 305
                   *****************************************************************999.**************************** PP

  BPD_transp_1 184 rk 185
                   r+
    KIR63068.1 306 RY 307
                   95 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   5.2e-06     0.047       4      49 ..     253     298 ..     250     308 .] 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.2e-06
                 EEESTSHHHHHHHHHHHHHTTCEEEEEE-TS-HHHHHHHHHEETTT CS
     Gp_dh_N   4 ainGfGRIGrlvlralleekelevvaindltdletlayllkyDsvh 49 
                 +i G   IGr vlra++++++ +vv i  +  l +l + l  D  +
  KIR63068.1 253 GIFGINGIGRAVLRAIVTKESATVVSIVVVLVLVYLLMNLLVDLLY 298
                 57777789*******************9977777776666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       941  (0.0524848); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2196.19
//
Query:       KIR63069.1  [L=327]
Description: peptide ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-28   99.3  13.1    2.1e-28   99.3  13.1    2.0  2  BPD_transp_1     Binding-protein-dependent transport system i
    1.8e-07   31.0   0.2    1.8e-07   31.0   0.2    2.6  3  OppC_N           N-terminal TM domain of oligopeptide transpo
  ------ inclusion threshold ------
       0.33   10.2   0.1       0.33   10.2   0.1    2.5  2  ABC2_membrane_2  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   3.1      0.88   5.3e+03      37      44 ..      61      76 ..      51     134 .. 0.54
   2 !   99.3  13.1   3.6e-32   2.1e-28       1     184 [.     135     327 .]     135     327 .] 0.97

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.88
  BPD_transp_1 37 illvlvf........v 44
                    l+++f         
    KIR63069.1 61 AALIVIFvlmaafpsL 76
                  3333333222222330 PP

  == domain 2  score: 99.3 bits;  conditional E-value: 3.6e-32
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf....vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGas 93 
                   g  +G++a+ + ++++d ll+++ +++++lP+++ ai+++  f    + ++ ++ + l ++ l++ls++ ++rl+r+++l + + d++ aaralGa+
    KIR63069.1 135 GGAIGMIAG-YAGGWVDALLSRFADIFFGLPFVLGAIVILTTFngaeSSNGEWQIMGLVIMSLVVLSWPVVMRLMRSSVLATKEADYIVAARALGAG 230
                   5679*****.************************999999999**99888888999999999*********************************** PP

  BPD_transp_1  94 rwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlvadilqrlld 180
                   + +i+ k++lPn l p++    + +g+++g+ + l+flg    +g+ +  +++g ++se++          ++++++lv avl ++ +  ++ ++ld
    KIR63069.1 231 HGRIILKHLLPNCLAPLLVYGTIMVGSFIGAEATLSFLG----IGLKTPVVSWGIMISEAQnyirvspfllFFPSAFLVTAVLSFVMLGEAVREALD 323
                   ***************************************....****************************************************** PP

  BPD_transp_1 181 prvr 184
                   p++r
    KIR63069.1 324 PKLR 327
                   **97 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.2     3e-11   1.8e-07       2      41 ..      43      82 ..      42      97 .. 0.83
   2 ?   -3.6   0.4         2   1.2e+04      17      30 ..     166     174 ..     165     177 .. 0.45
   3 ?   -3.5   0.5       1.9   1.1e+04      19      28 ..     190     199 ..     188     208 .. 0.65

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 3e-11
      OppC_N  2 lwqdawrrFkrNklAvvglvilllllliaifaPliaPydp 41
                l+ dawr ++r +l +v+ +++++++l+a+f  l++  dp
  KIR63069.1 43 LLGDAWRDLRRKPLFWVSAALIVIFVLMAAFPSLFSSGDP 82
                789****************************777765555 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2
      OppC_N  17 vvglvillllllia 30 
                 v+g +++l      
  KIR63069.1 166 VLGAIVIL-----T 174
                 34444444.....3 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.9
      OppC_N  19 glvillllll 28 
                 glvi  l++l
  KIR63069.1 190 GLVIMSLVVL 199
                 5555554444 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   5.5e-05      0.33       8      41 ..      48      80 ..      43     105 .. 0.84
   2 ?   -3.6  13.7      0.88   5.3e+03     129     209 ..     118     200 ..     107     316 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 5.5e-05
  ABC2_membrane_2  8 frdlvrsrrfllltvllplidvalaylkdlgssl 41
                     +rdl+r++ f++ ++l++++ v +a++++l ss 
       KIR63069.1 48 WRDLRRKPLFWVSAALIVIF-VLMAAFPSLFSSG 80
                     89******************.9999999887765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.88
  ABC2_membrane_2 129 aigla.iavallatvllalaiilalgivlaledllllvvasvlllllvvflalglllSsv..arssreaaalalglfvvlailv 209
                       ++++  +++++ t+l++ ai ++ g++  + d ll  +a ++++l +v l++ + l ++  a ss+ + +++  +++ l++l+
       KIR63069.1 118 RASIVvALISTIGTLLIGGAIGMIAGYAGGWVDALLSRFADIFFGLPFV-LGAIVILTTFngAESSNGEWQIMGLVIMSLVVLS 200
                      45567688888889999*************************9999776.7777777887334555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2201.55
//
Query:       KIR63070.1  [L=342]
Description: methionine ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-25   89.8   0.0    2.9e-25   89.4   0.0    1.2  1  ABC_tran         ABC transporter
    1.1e-20   73.9   0.1    2.4e-20   72.8   0.1    1.6  1  oligo_HPY        Oligopeptide/dipeptide transporter, C-termin
    4.5e-05   23.4   0.2    0.00032   20.6   0.0    1.9  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    0.00011   21.8   0.0    0.00019   21.0   0.0    1.3  1  SMC_N            RecF/RecN/SMC N terminal domain
     0.0032   17.7   0.2       0.25   11.6   0.0    2.2  2  AAA_22           AAA domain
  ------ inclusion threshold ------
       0.01   16.3   0.2      0.015   15.7   0.2    1.6  1  AAA_16           AAA ATPase domain
      0.041   14.0   0.3      0.073   13.1   0.3    1.3  1  DUF87            Helicase HerA, central domain
      0.043   13.6   0.1      0.089   12.6   0.1    1.5  1  AAA_29           P-loop containing region of AAA domain
       0.11   12.1   0.2       0.31   10.7   0.0    1.7  2  Sigma54_activat  Sigma-54 interaction domain
       0.15   11.9   0.1        0.3   11.0   0.1    1.4  1  NACHT            NACHT domain
       0.19   10.9   0.0        6.5    5.9   0.2    2.1  2  NB-ARC           NB-ARC domain
       0.28    9.2   0.2       0.37    8.8   0.2    1.1  1  Herpes_ori_bp    Origin of replication binding protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.0   1.9e-28   2.9e-25       2     136 ..      40     198 ..      39     199 .. 0.93

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 1.9e-28
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH.......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx.......... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp.....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren.......... 79 
                 + v+ ++ +ge++a++Ge+G+GKS  +++++g l+      t G++++ gkd+ +    +++++  + i++++q+  + l+p  tv+ +          
  KIR63070.1  40 NGVTYHVDAGETLAVLGESGSGKSVTAQTIMGILDTppgfvTGGQVRFHGKDMLTmsaeERRRIRGEGIAMIFQDalSALNPVFTVGFQiaeqfrirrg 138
                 68999****************************99989999**********99999998888888899*******999999999998889999****** PP

                 ....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                     ++++++ ++l+++++++ k +  ++ p+++SgG++qr ++a++l+ +p++l++DEpt
  KIR63070.1 139 lsraDAKKRAIEMLDQVKIPNAKGRF-SNYPHQFSGGMRQRAMIAMSLALDPEVLIADEPT 198
                 **9999999************66666.6999*****************************9 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.1   1.6e-23   2.4e-20       1      65 []     250     314 ..     250     314 .. 0.99

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 1.6e-23
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekdklekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE++++ +l  +p+HPYT +L++s+pr+d++ ++l++ikg +p+l +++ GCpF+pRCp+a++ C
  KIR63070.1 250 VEEANVYDLYAKPAHPYTMGLIDSIPRMDERGQQLRTIKGLPPNLMNIPPGCPFNPRCPMAQPVC 314
                 8**************************************************************99 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.29   4.3e+02       4      25 ..      54      75 ..      52     121 .. 0.74
   2 !   20.6   0.0   2.1e-07   0.00032     234     302 ..     168     234 ..     134     235 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.29
      AAA_21  4 liGpNgsGKSnLLdaldllarl 25
                + G  gsGKS   +++ ++ ++
  KIR63070.1 54 VLGESGSGKSVTAQTIMGILDT 75
                78999*****999999777665 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 2.1e-07
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                 ++++S G+++  a++++ l++++   +l+ DEp + L+  +++ +++ll el+r +    il TH+  ++
  KIR63070.1 168 PHQFSGGMRQR-AMIAMSLALDP--EVLIADEPTTALDVTVQAQIMDLLAELQReRQMGMILITHDLGVV 234
                 5788*******.66666666665..9***********************99999666667*****98776 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.2e-07   0.00019      27     211 ..      52     243 ..      39     251 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.2e-07
                 EEEEESTTSSHHHHHHHHHHHC....TT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HH CS
                 xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvL....Gersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkk 121
                  a++G+ GSGKs   + i+ +L    G+ +  ++r +  + l  + +e++++    ++++f++  ++    ++ +++  ++ ++ + +  + + +++k+
  KIR63070.1  52 LAVLGESGSGKSVTAQTIMGILdtppGFVTGGQVRFHGKDMLTMSAEERRRIRGEGIAMIFQDALSA---LNPVFTVGFQIAEQFRIRRGLSRADAKKR 147
                 5899**************98886666677888999998888888878888888888***99887776...66777777777777777777777777766 PP

                 HHHHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSE..EEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
       SMC_N 122 evsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQ..fivislreemlekadklv 209
                  + e+l +++i            ++SgG ++ +++a+ +A+   +p+   + De   aLD +  +++ +ll e + + Q  +i i+++ ++++++   +
  KIR63070.1 148 AI-EMLDQVKIPNAkgrfsnyphQFSGGMRQRAMIAMSLAL---DPEV-LIADEPTTALDVTVQAQIMDLLAELQRERQmgMILITHDLGVVADVADRI 241
                 65.56777777666677777777**************9997...5665.578********************988887733699999988887765444 PP

                 EE CS
                 xx RF
       SMC_N 210 gv 211
                  v
  KIR63070.1 242 AV 243
                 44 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00017      0.25       8      28 ..      52      72 ..      47     121 .. 0.89
   2 ?    4.3   0.1      0.03        45      75     128 ..     172     227 ..     128     233 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
      AAA_22  8 lvvtGesGtGKTtllrrlleq 28
                l+v GesG+GK++++++++  
  KIR63070.1 52 LAVLGESGSGKSVTAQTIMGI 72
                7899***********998755 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.03
      AAA_22  75 seell.ealeqalraravielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                 s  ++ +a+   + a +  e+li DE    l+   +++++  L +l+   + ++ +iL+
  KIR63070.1 172 SGGMRqRAMIAMSLALDP-EVLIADEPTTaLDvtvQAQIMDLLAELQR--ERQMGMILI 227
                 334444455555555555.*******9998988665888888888899..999999998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.2     1e-05     0.015      21      63 ..      48      87 ..      32     284 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1e-05
      AAA_16 21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                +g  e + + GesG+GKs  +++++  l +    f++g  +++
  KIR63070.1 48 AG--ETLAVLGESGSGKSVTAQTIMGILDTP-PGFVTGGQVRF 87
                44..7899*****************888877.66666655555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   4.9e-05     0.073      26      44 ..      52      70 ..      40      73 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.9e-05
       DUF87 26 lAilgsTGsGKSntvavLl 44
                lA+lg++GsGKS t+  ++
  KIR63070.1 52 LAVLGESGSGKSVTAQTIM 70
                8**************9986 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   5.9e-05     0.089      13      37 ..      40      64 ..      37      77 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.9e-05
      AAA_29 13 dghtieidlkgatlltGpsGsGKST 37
                +g t+++d  ++  + G+sGsGKS 
  KIR63070.1 40 NGVTYHVDAGETLAVLGESGSGKSV 64
                67889999666999**********6 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00021      0.31       8      43 ..      35      70 ..      29      77 .. 0.83
   2 ?   -1.9   0.0       1.6   2.4e+03     103     124 ..     199     220 ..     171     247 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00021
                     HHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHH CS
  Sigma54_activat  8 lkelleqikkvaktdlsvlitGesGtGKellaraih 43
                     ++++++ ++  ++   ++ ++GesG+GK++ a++i 
       KIR63070.1 35 VAKVINGVTYHVDAGETLAVLGESGSGKSVTAQTIM 70
                     5667777777888889999**************985 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.6
                      GGS-HHHHHHHHHHHHHSEEES CS
  Sigma54_activat 103 gelplelQekLlrvlqegever 124
                      + l++++Q++++ +l e + er
       KIR63070.1 199 TALDVTVQAQIMDLLAELQRER 220
                      4677888888888887765554 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1    0.0002       0.3       2      24 ..      51      73 ..      50      87 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0002
                CEEEEC-TTTCHHHHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqklalaw 24
                ++++ Ge+GsGK++ +q ++  +
  KIR63070.1 51 TLAVLGESGSGKSVTAQTIMGIL 73
                789****************9655 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.2    0.0043       6.5       8      41 ..      38      70 ..      32      75 .. 0.77
   2 ?    2.6   0.0     0.042        63     125     199 ..     216     292 ..     201     298 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0043
                HHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHC CS
      NB-ARC  8 viekLlekdelqslvvalvGmgGvGKttlakqil 41
                vi+    + + +   +a+ G  G+GK++ a+ i+
  KIR63070.1 38 VINGVTYHVDAG-ETLAVLGESGSGKSVTAQTIM 70
                555555555555.6899*************9986 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.042
                 HHHCHTTSEEEEEESBCCCCCCS-S-.EEEEEESS--HHHHHHHHHHCCTS-GGCHH..CHHHHH..HHHHHCTT-HH CS
      NB-ARC 125 lparenrlrvllTTRdeevanavsat.sekievelLekdeawellenkvfekkleekesleevak..eivekckGlPl 199
                 l+ re+++ ++l T d  v   v+++   +   ++ e+ + ++l  + + + +++  +s++++ +  +  +  kGlP 
  KIR63070.1 216 LQ-RERQMGMILITHDLGVVADVADRiAVMYAGRIVEEANVYDLYAKPAHPYTMGLIDSIPRMDErgQQLRTIKGLPP 292
                 44.899999*********999999998999999*************99999888776665554431122344566665 PP

>> Herpes_ori_bp  Origin of replication binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.2   0.00025      0.37     184     214 ..     199     229 ..     170     255 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00025
  Herpes_ori_bp 184 iAmDAtvnaqlvdllaalrgdenihvivsey 214
                     A+D tv+aq++dlla+l+ ++++ +i  ++
     KIR63070.1 199 TALDVTVQAQIMDLLAELQRERQMGMILITH 229
                    69*********************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 2599.13
//
Query:       KIR63071.1  [L=337]
Description: peptide ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-34  119.4   0.0      2e-34  119.0   0.0    1.2  1  ABC_tran         ABC transporter
    3.7e-18   65.8   0.1    2.7e-17   63.0   0.1    2.3  2  oligo_HPY        Oligopeptide/dipeptide transporter, C-termin
    0.00034   20.9   0.2     0.0047   17.2   0.2    2.2  1  AAA_22           AAA domain
    0.00062   20.2   0.0    0.00085   19.7   0.0    1.3  1  AAA_16           AAA ATPase domain
     0.0013   18.6   0.1       0.16   11.8   0.0    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0083   16.0   0.1      0.013   15.4   0.1    1.3  1  RsgA_GTPase      RsgA GTPase
     0.0085   14.8   0.1       0.48    9.0   0.0    2.0  2  AAA_13           AAA domain
  ------ inclusion threshold ------
      0.011   15.2   0.0       0.11   11.9   0.0    2.0  1  SMC_N            RecF/RecN/SMC N terminal domain
      0.015   15.4   0.0      0.038   14.1   0.0    1.8  1  MMR_HSR1         50S ribosome-binding GTPase
      0.023   14.6   0.0      0.043   13.7   0.0    1.4  1  Rad17            Rad17 P-loop domain
      0.033   14.6   0.0       0.13   12.7   0.0    2.0  1  AAA              ATPase family associated with various cellul
      0.051   13.7   0.5        0.1   12.7   0.5    1.4  1  DUF87            Helicase HerA, central domain
      0.059   13.1   0.0        0.1   12.4   0.0    1.3  1  AAA_29           P-loop containing region of AAA domain
      0.072   12.8   0.2       0.86    9.3   0.1    2.1  2  Sigma54_activat  Sigma-54 interaction domain
      0.085   12.8   0.0       0.14   12.0   0.0    1.3  1  NACHT            NACHT domain
      0.086   12.7   0.0        2.5    8.0   0.0    2.4  2  APS_kinase       Adenylylsulphate kinase
       0.12   12.5   0.0       0.28   11.4   0.0    1.8  1  AAA_33           AAA domain
       0.13   11.6   0.0         11    5.4   0.0    2.2  2  TniB             Bacterial TniB protein
       0.14   12.6   0.1       0.25   11.7   0.1    1.4  1  RNA_helicase     RNA helicase
       0.15   11.4   0.0       0.39   10.1   0.0    1.7  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
        0.2   11.4   0.0        0.3   10.8   0.0    1.3  1  PRK              Phosphoribulokinase / Uridine kinase family
       0.21   10.8   0.1       0.33   10.1   0.1    1.2  1  NB-ARC           NB-ARC domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0   0.0   2.5e-37     2e-34       2     136 ..      34     185 ..      33     186 .. 0.95

  Alignments for each domain:
  == domain 1  score: 119.0 bits;  conditional E-value: 2.5e-37
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TTSBHHHH............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx............xxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpeltvren............esde 83 
                 + vsl+lk+ge++++vGe+G+GKStL+++l++l++pt+G+++++g+d+++     l++lr++i+ + q+  ++l+p++tv++              + +
  KIR63071.1  34 DGVSLELKAGETLGVVGESGCGKSTLARVLMNLERPTAGSVNYKGQDISKlsgGALRRLRRQIQLVMQDpyTSLNPRMTVGDLigepfeihpevsPKGS 132
                 78**************************************************99***************999********************9997777 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + +k+ + l+l++l+ +++++ p+++SgGq+qr+ +aral+ +p+++++DEp 
  KIR63071.1 133 RRDKVKELLDLVGLNPEHINRYPHQFSGGQRQRIGIARALALRPEIIICDEPV 185
                 788888888888888899999*******************************7 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.1   3.4e-20   2.7e-17       1      65 []     237     304 ..     237     304 .. 0.98
   2 ?   -0.6   0.0       2.4   1.9e+03      45      58 ..     316     329 ..     307     334 .. 0.78

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 3.4e-20
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd...klekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE+g+ +++ ++p HPYT+aLl++vp +d+  +   ++ ++ g++ps+   ++GC+F++RC+ a++ C
  KIR63071.1 237 VEIGTEDEIYERPTHPYTQALLSAVPVPDPTLRdqkAIIRLTGDVPSPVSPPSGCRFRTRCWKAQDVC 304
                 8******************************999999*****************************99 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.4
   oligo_HPY  45 lerldeGCpFapRC 58 
                  ++++++C Fa+  
  KIR63071.1 316 GSDHPSACHFAEKR 329
                 5678889***9875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   5.7e-06    0.0047      10     128 ..      48     214 ..      41     222 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.7e-06
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee............................................erpevvfvtlpsstsskdllrellral 64 
                 v+GesG+GK+tl+r l++    ++ a                                               +p  ++ +++ ++s++d  +ell  +
  KIR63071.1  48 VVGESGCGKSTLARVLMNLE--RPTAGSvnykgqdisklsggalrrlrrqiqlvmqdpytslnprmtvgdliGEPFEIHPEVSPKGSRRDKVKELLDLV 144
                 89************999986..33333355777777777777777777777777777766665555555555444444666666666666666666666 PP

      AAA_22  65 glelka...erlsseellealeqalrarav.ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                 gl+ ++   ++++ +   ++    +ra a  +e++i DE    l+   ++++++ L +l+   ++g++ +++
  KIR63071.1 145 GLNPEHinrYPHQFSGGQRQRIGIARALALrPEIIICDEPVSaLDvsiQAQVMNLLEKLQA--EFGLSYVFI 214
                 6666665444444444443333333443337788888886666777444777777777777..777777776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     1e-06   0.00085      25      88 ..      44      99 ..      32     206 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1e-06
      AAA_16 25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqllde 88
                e + ++GesG+GKs+l+r l+  le+  +  ++ k ++      +s   ++     +l rq+   
  KIR63071.1 44 ETLGVVGESGCGKSTLARVLM-NLERPTAGSVNYKGQDI---SKLSGgALR-----RLRRQIQLV 99
                56779****************.79988766677777777...333333444.....444444333 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.03        25       3      20 ..      47      64 ..      46      98 .. 0.76
   2 !   11.8   0.0   0.00019      0.16     231     294 ..     152     213 ..     122     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.03
      AAA_21  3 vliGpNgsGKSnLLdald 20
                +++G  g+GKS+L + l 
  KIR63071.1 47 GVVGESGCGKSTLARVLM 64
                589**********99994 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00019
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQvil 294
                 ++ ++++S G+++ ++++ al+ ++    +++ DEp + L+ ++++ ++ ll++l++  g   ++
  KIR63071.1 152 NRYPHQFSGGQRQRIGIARALALRP---EIIICDEPVSALDVSIQAQVMNLLEKLQAeFGLSYVF 213
                 567899********99999999999...9***********************8887754444444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.6e-05     0.013      87     125 ..      30      69 ..       3      84 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.6e-05
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallpelel 125
                   ++++ ++ +lk  +t  +vG+SG GKStL  +l++ ++ 
   KIR63071.1  30 VKAVDGVSLELKAgETLGVVGESGCGKSTLARVLMNLERP 69 
                  566677777777779999**************99876544 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.023        19      23      42 ..      50      69 ..      48      91 .. 0.82
   2 !    9.0   0.0   0.00059      0.48     527     579 ..     176     226 ..     169     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.023
      AAA_13 23 GwNGaGKTtLSrllrslelg 42
                G  G GK+tL+r+l +le+ 
  KIR63071.1 50 GESGCGKSTLARVLMNLERP 69
                7789*************863 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00059
      AAA_13 527 dkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkk 579
                  +i++ D PvS LD  ++  v++l+++    +   + +fi  H l+  + +++
  KIR63071.1 176 PEIIICDEPVSALDVSIQAQVMNLLEKLQ-AEFGLSYVFIA-HDLSVVRHLSD 226
                 68************************997.67778888884.77777777665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014      0.11      28     201 ..      47     220 ..      26     235 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
                 EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsel 126
                  +vG+ G+GKs l   +   L   +a ++ + k +d+ + s    +  + +++++++++  +    ++++++   + +  e + ++  k  ++ +v+el
  KIR63071.1  47 GVVGESGCGKSTLARVL-MNLERPTAGSV-NYKGQDISKLSGGALRRLRRQIQLVMQDPYTS---LNPRMTVGDLIGEPFEIHPEVSPKGSRRDKVKEL 140
                 47777777777777666.45544333222.23334433334555556666677766666555...6677777777777777777888888999999*** PP

                 HHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHH CS
                 xxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx RF
       SMC_N 127 lesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreem 201
                 l  +g+++e       ++SgG+++ + +a  +A++   p+ + + De  +aLD +  ++v +ll++ + +    ++ i+++  +
  KIR63071.1 141 LDLVGLNPEhinryphQFSGGQRQRIGIARALALR---PE-IIICDEPVSALDVSIQAQVMNLLEKLQAEfgLSYVFIAHDLSV 220
                 ******9999999999*************999985...43.7889********************9987733345555555555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.7e-05     0.038       2      35 ..      46      80 ..      45     215 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.7e-05
                EEEEESTTSSHHHHHHHHHT.STEEESSSTTSSSS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg.ekaivsdkpgtTrd 35
                 ++vG +  GKStL + l++ e+  +++ + + +d
  KIR63071.1 46 LGVVGESGCGKSTLARVLMNlERPTAGSVNYKGQD 80
                689****************8523333333333333 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.3e-05     0.043      23      66 ..      22      64 ..      13      73 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.3e-05
       Rad17 23 vhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLs 66
                v kk i +vk +++  +Le +  + L + G sGCgkst  +vL 
  KIR63071.1 22 VFKKTIGHVK-AVDGVSLELKAGETLGVVGESGCGKSTLARVLM 64
                7899999997.7899******9*****************99986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00016      0.13       3      47 ..      48      93 ..      46     216 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00016
                EESSTTSSHHHHHHHHHHH....HTHEEEEEETTTCSSSSTTHHHHHHH CS
         AAA  3 lyGppGtGKTllakavake....lgvefleisgsellskyvgesekkir 47
                ++G  G+GK++la+ +++     +    ++ +g ++  k+ g + +++r
  KIR63071.1 48 VVGESGCGKSTLARVLMNLerptA--GSVNYKGQDIS-KLSGGALRRLR 93
                68***************9833321..33444444444.43333333333 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   0.00013       0.1      23      45 ..      43      65 ..      25      66 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
       DUF87 23 trHlAilgsTGsGKSntvavLle 45
                 + l+++g++G GKS++++vL++
  KIR63071.1 43 GETLGVVGESGCGKSTLARVLMN 65
                5669*****************86 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00012       0.1      13      38 ..      34      59 ..      30      76 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTl 38
                dg ++e++  ++  ++G+sG GKSTl
  KIR63071.1 34 DGVSLELKAGETLGVVGESGCGKSTL 59
                67778888555777***********9 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1    0.0011      0.86      24      47 ..      45      68 ..      24      82 .. 0.81
   2 ?    1.1   0.0      0.34   2.8e+02      78     120 ..     158     203 ..     155     209 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0011
                     -EEEECSTTSSHHHHHHHHHHHST CS
  Sigma54_activat 24 svlitGesGtGKellaraiheask 47
                     ++ ++GesG+GK++lar + + ++
       KIR63071.1 45 TLGVVGESGCGKSTLARVLMNLER 68
                     55589************9988665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.34
                      STTTSS-BEHHHHHT..TTSEEEEET.GGGS-HHHHHHHHHHHHHS CS
  Sigma54_activat  78 FtGAekekkGlfeka..dgGtlfLDe.igelplelQekLlrvlqeg 120
                      F+G ++++ G  ++      ++  De ++ l++++Q++++++l++ 
       KIR63071.1 158 FSGGQRQRIGIARALalRPEIIICDEpVSALDVSIQAQVMNLLEKL 203
                      778888888876643114567777877999***********99985 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00018      0.14       2      22 ..      45      65 ..      44      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00018
                CEEEEC-TTTCHHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqklal 22
                ++ + Ge+G+GK+tL++ l+ 
  KIR63071.1 45 TLGVVGESGCGKSTLARVLMN 65
                56699***********99885 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0     0.003       2.5       4      96 ..      45     141 ..      42     149 .. 0.69
   2 ?    2.3   0.0      0.18   1.4e+02     123     147 ..     228     252 ..     162     257 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.003
                 EEEEESSTTSSHHHHHHHHHH.......HHHHTT--EEEEEHHHHTTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTT-EEEEE----SHHHHHHHHHH CS
  APS_kinase   4 vvwltGlsgsGKstianalek.......kLvekgisvylLdGdnvRhgLnkdLgfseedRkenirrvaevaklladaglivlvafisPyreeReaarel 95 
                 ++ + G sg GKst+a+ l +       +++ kg+ +  L G  +R+ L +++   ++d  + +     v  l+ +     +   +sP  ++R++++el
  KIR63071.1  45 TLGVVGESGCGKSTLARVLMNlerptagSVNYKGQDISKLSGGALRR-LRRQIQLVMQDPYTSLNPRMTVGDLIGEPF--EIHPEVSPKGSRRDKVKEL 140
                 666789**********8875311122224666778888888888874.777777777777777776677777776654..4567777777777777776 PP

                 H CS
  APS_kinase  96 l 96 
                 l
  KIR63071.1 141 L 141
                 5 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.18
                 HHHHHTTSSSSHTTTSS-----SS- CS
  APS_kinase 123 YkkareGeikeftGidspYeaPenp 147
                  +    G+i e+   d+ Ye+P++p
  KIR63071.1 228 VAVMYLGKIVEIGTEDEIYERPTHP 252
                 44555799**************998 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00034      0.28       4      21 ..      48      65 ..      46     223 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00034
      AAA_33  4 lvGlpGsGKstlaerllk 21
                +vG +G+GKstla+ l++
  KIR63071.1 48 VVGESGCGKSTLARVLMN 65
                69************9984 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.038        31      38      62 ..      46      70 ..      39      81 .. 0.82
   2 ?    5.4   0.0     0.013        11     117     160 ..     173     214 ..     152     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.038
        TniB 38 lllvGdsnnGKtmivekFarlhppe 62
                l +vG+s +GK+++++  ++l++p+
  KIR63071.1 46 LGVVGESGCGKSTLARVLMNLERPT 70
                669***********99887777665 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.013
        TniB 117 elkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                 +l+++++i DE  ++l   ++ q +++n+l +L+ e+ ++ v +
  KIR63071.1 173 ALRPEIIICDEPVSAL--DVSIQAQVMNLLEKLQAEFGLSYVFI 214
                 56789******99999..6778899************9999976 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00031      0.25       3      20 ..      48      65 ..      46      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00031
  RNA_helicase  3 lyGpsgeGKStlakeLak 20
                  ++G+sg+GKStla+ L++
    KIR63071.1 48 VVGESGCGKSTLARVLMN 65
                  78************9764 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00048      0.39       5      85 ..      26     111 ..      22     129 .. 0.63
   2 ?   -2.1   0.0       2.5   2.1e+03     174     196 ..     147     169 ..     136     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00048
  Mg_chelatase   5 vkGqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvag.....kkeeekllkrrpfraphhsa 85 
                    +G+ +a   + +    g  l +vG +G+GK+ la+ l++l  p   +   + + i+ ++g      +++ +l+ + p+++    +
    KIR63071.1  26 TIGHVKAVDGVSLELKAGETLGVVGESGCGKSTLARVLMNLERPTAGSVNYKGQDISKLSGgalrrLRRQIQLVMQDPYTSLNPRM 111
                   56666677777777777778999***************999877766655555555554442111133444555555555555555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.5
  Mg_chelatase 174 sekeierYlsklsgplldRidlq 196
                   ++++i+rY ++ sg    Ri + 
    KIR63071.1 147 NPEHINRYPHQFSGGQRQRIGIA 169
                   678999********999999875 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00037       0.3       2      22 ..      46      66 ..      45      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00037
         PRK  2 IgvagsSGaGkttvarkleki 22
                +gv g+SG+Gk+t+ar l ++
  KIR63071.1 46 LGVVGESGCGKSTLARVLMNL 66
                599************998764 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1    0.0004      0.33      22      42 ..      45      65 ..      29      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0004
                EEEEEESTTSSHHHHHHHHCC CS
      NB-ARC 22 vvalvGmgGvGKttlakqiln 42
                 +++vG  G+GK+tla+  +n
  KIR63071.1 45 TLGVVGESGCGKSTLARVLMN 65
                689*************87665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 2071.51
//
Query:       KIR63072.1  [L=616]
Description: 5'-nucleotidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-41  141.9   0.3    3.7e-41  141.0   0.3    1.4  1  5_nucleotid_C  5'-nucleotidase, C-terminal domain
    0.00036   21.1   0.0    0.00058   20.4   0.0    1.4  1  Metallophos    Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> 5_nucleotid_C  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.0   0.3   4.2e-45   3.7e-41       2     156 ..     414     577 ..     413     579 .. 0.92

  Alignments for each domain:
  == domain 1  score: 141.0 bits;  conditional E-value: 4.2e-45
                    EEEESSB....---HHTS--HHHHHHHHHH...TGSTT--EEEEEGGG----B.........TTTEEEHHHHHHHS-S--EEEEEEEEHHHHHHHH CS
  5_nucleotid_C   2 igtttveldgrdlalrtgetnlgnliadal...raaagadialangggiradl.........paGditvkdlltvlpfgntlvvveltGaqlkeaL 85 
                    +g++++++ +   al +ge++lg++iada+    +++ga+ial+n+gg+ra+          ++G++t++++++v+pf+n +v+ + tGaqlk +L
     KIR63072.1 414 VGKISADIVR--DALPNGESPLGDVIADAQlayTKSNGAQIALMNPGGVRASMsygasaggeAPGEVTYGEAFAVQPFNNLVVTQTFTGAQLKNVL 507
                    6777775333..46779*************999999999************77779999999899******************************* PP

                    HH.HTTTTTS--TT-EEEE.SEEEEE-TTS-TT--EEEESSS-BEEE--TTSEEEEEEEHHHHTTGGG-HHH CS
  5_nucleotid_C  86 enesvsaskaasgrflqvs.GlrytydlskpagervtslsvtvngkpldddktYkvatnsylasggdgfsml 156
                    e++ v+ + ++ +r+lqvs Gl+y yd ++pag+rv+ l +  ng+p+d++++Ykv+tn++la+ggdgf+ l
     KIR63072.1 508 EQQFVGFNGQTAQRILQVSaGLTYSYDSTAPAGSRVSALAL--NGTPIDPAASYKVTTNDFLANGGDGFTEL 577
                    **8889999******************************55..**************************866 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   6.4e-08   0.00058       3     203 ..      65     315 ..      63     316 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 6.4e-08
                  EEEEESBTB.............TTCCTHHHHHHHHHHHHHHH....TTESEEEEEST......SSSSS.HHHHHHHHHHHHHHHHTSEEEEEC-TTSC CS
  Metallophos   3 ilvigDlHl.............algggqlddllkllddllre....ekpdlvllaGD......lvdrg.dlekellellaalvkypipvylllGNHeg 76 
                  +l  +D H+                 g+ ++l+++l++l++e     ++   + aGD      lv      e  ++el+++ + +    +   GNHe 
   KIR63072.1  65 FLSYNDFHGaidppagsgavvnGTPAGGVEYLATWLKKLRAEakaeGRVTTTVGAGDrigatpLVSAAfHDEP-TIELMDEIGLE----ISSVGNHE- 156
                  66679999999999999999998888*************5555553677888878**8777776666545555.99999999997....********. PP

                  HHHHHHHHHHHHHHHHHHHEHH.......HCEEETSEEEEEETTE.......EEEEEEESECEEE..........THHHHHHHHHHHSCHHHHCC... CS
  Metallophos  77 feeellnkygylgifsepwrsd.......aevfnnlplaslgsgs.......lkvlllhGgspel..........lvsldklgslnleleapepg... 147
                  f+e++ ++ + ++   +p   +       + +f +l  + + +++       ++v ++ G + ++          +v++  ++s+++ +e+++ +   
   KIR63072.1 157 FDEGVDELIRLNKGGCHPVDGCqdgdgfaGAKFTYLAANTISKKTklpilppVDVKFVGGVPVGFvgvtlegtpgIVNPAGITSVTFKDEVETANkwg 254
                  9999999999888885555555556666666666666666555556777777777777777444455555666666*****************76654 PP

                  ..HHHHHHHHHHTTCSEEEEEESSESS.........CSSSCSCCHHHHHHH.HHHTTESEEEEESSSS CS
  Metallophos 148 ..dewlkdlekrekadwvivlgHsply.........rgsgylfgdealedl.lkkygvdlvisGHtHv 203
                     ++        +++  ++l H +            + +  f+ + ++ +   +++  lv+sGHtH+
   KIR63072.1 255 glLKL-------FGVKAMVLLVHEGGAqspppstpgVSDCANFSGPIVDIVkGLRPEFGLVVSGHTHR 315
                  43333.......33355555555555545555777744444444444555668888899********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4663.83
//
Query:       KIR63073.1  [L=799]
Description: ATP-dependent DNA helicase PcrA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-77  259.1   0.0      2e-76  257.6   0.0    1.7  1  UvrD-helicase    UvrD/REP helicase N-terminal domain
    9.4e-66  222.6   0.0    4.5e-33  115.1   0.0    2.1  2  UvrD_C           UvrD-like helicase C-terminal domain
    3.7e-35  121.4   0.0    1.2e-34  119.7   0.0    1.9  2  AAA_19           AAA domain
      4e-11   42.6   0.3    2.1e-10   40.3   0.3    2.3  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    1.3e-08   34.8   0.9    0.00021   21.1   0.0    2.8  3  AAA_30           AAA domain
  ------ inclusion threshold ------
      0.011   15.4   0.2        1.4    8.6   0.0    3.2  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.12   10.6   0.0       0.18   10.0   0.0    1.2  1  Exonuc_V_gamma   Exodeoxyribonuclease V, gamma subunit


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.6   0.0   7.7e-80     2e-76       2     314 ..      40     306 ..      39     307 .. 0.95

  Alignments for each domain:
  == domain 1  score: 257.6 bits;  conditional E-value: 7.7e-80
                    SHHHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCTT-HHHHHHHHHCTTSEEEEH CS
  UvrD-helicase   2 npeqreaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessdderlrlalqnlseanisTl 97 
                    n  qr+a+++ g+p+l++A+AGsGKT+vl++ri++l++++ ++p +i+++TFTnkAa E+keR++++++ +                ++ +++sT+
     KIR63073.1  40 NGPQRDAVVHAGSPLLIVAGAGSGKTRVLTHRIAYLLAARDVHPGEIIAITFTNKAAGEMKERVTQLVGPR----------------ARLMWVSTF 119
                    6679**************************************************************99987................79******* PP

                    HHHHHHHHHHHHGGTTSHTTTEEECHHHHHHCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCHHHHHHHHHHHTT CS
  UvrD-helicase  98 Hsfcqkilkkeanrigldpnfrildeedeedlkqqellkelleksaddslnldkkkleklikelsksrnikkeelslskskaeelrelvskakekq 193
                    Hs c +il++e++++gl++ f+i+d +d     +++l++ +       +l+ld k + ++                        l++ vs++k+++
     KIR63073.1 120 HSACVRILRAEHEHAGLKSSFSIYDADD-----SRRLMQLVAR-----ELDLDPKRYPAR-----------------------GLAAQVSNLKNEL 182
                    ****************************.....6666655553.....5999**999966.......................89*********** PP

                    CCTTHHCHSSTSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHHTTTTT.... CS
  UvrD-helicase 194 lspkelkkafekasdlqkkiaeflkeyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyrilkllasghee.... 285
                    ++p+e     +++ ++++++ae++  yq++++e +alDf+dl++ +++l+++++++ae +r+r++++l+DEyQDTn++Qy+++k l+sg+e     
     KIR63073.1 183 VDPEEFAG--RAKGPNERALAEAYTLYQRRLREAHALDFDDLIMTTVHLFQSHPHVAEGYRRRFRHVLVDEYQDTNHAQYTLIKELVSGTEGiepa 276
                    *****998..889****************************************************************************9779999 PP

                    .EEEEE-GGG--GGGGTB-THHHHHHHHHS CS
  UvrD-helicase 286 .lfmvGDpkQsIYgFRgAdielflkkkkdf 314
                     l++vGD +QsIY+FRgA i+++l++++df
     KIR63073.1 277 eLCVVGDADQSIYAFRGATIRNILEFERDF 306
                    9**************************998 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   1.8e-36   4.5e-33       1     147 [.     312     458 ..     312     474 .. 0.92
   2 !  105.5   0.0   1.5e-33   3.8e-30     229     346 ..     532     658 ..     498     661 .. 0.84

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 1.8e-36
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C   1 ivLekNyRStksLlkaankflenilnrralekek...ktvekgekivvleaeteeeEaekiaatikall.ekneklediavLvRsnkdadkiskaLkke 95 
                 i Le+NyRSt+++l+aan++++++++r    k k   +++  ge+iv + a+te  Ea+++ +++ +l+ + +    d+av +R+n++++ +++ + ++
  KIR63073.1 312 ILLEQNYRSTQTILNAANAVIDRNTSR----KPKrlwSDAGAGEQIVGYVADTEHAEADWVGREVDRLVdDDEARPGDVAVFYRTNAQSRVFEEVFIRI 406
                 679******************999999....33347899******************************66667779********************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  96 gipfnvvdeekfFkreeikdilaylkllankqdkialkrilkrlvlgigkat 147
                 g+p++vv++ +f++r+e++d+layl+ ++n++d+++l+ril+++ +gig+++
  KIR63073.1 407 GLPYKVVGGVRFYERKEVRDALAYLRAVVNDDDTVSLRRILNTPRRGIGERA 458
                 *************************************************976 PP

  == domain 2  score: 105.5 bits;  conditional E-value: 1.5e-33
                 xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 229 eskrkkee.klenlreLysllkelekkeeeeeveek...lneileiatLseseleeskkk....ekipiiTiHqAKGlEFdvVflagleegtfPsyrsk 319
                 es +++++ +++nl+eL+s+++e+ +  e  + e +   l+ +le+ +L ++ ++  +++      ++++T+H AKGlEF+vVfl gle+g fP++r+ 
  KIR63073.1 532 ESLDPQDAgRVDNLQELVSVAREYTERVEALGEEGEratLAGFLEQVALVADADQIPSDDpdhqGVVTLMTLHTAKGLEFPVVFLTGLEDGVFPHLRAL 630
                 333344457****************99988777766777**********99988765555555578*******************************99 PP

                 x.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 320 k.ekrleEEkRlfYVaiTRAkkrLfisy 346
                    ++leEE+Rl YV+iTRA++rL++s 
  KIR63073.1 631 GdTRELEEERRLAYVGITRARQRLYLSR 658
                 77889********************996 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.0   4.8e-38   1.2e-34       1     146 []      43     292 ..      43     292 .. 0.95
   2 ?   -2.0   0.0       1.6   4.1e+03     130     143 ..     576     589 ..     542     591 .. 0.84

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 4.8e-38
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae......atTiHrlal................ 77 
                 qr+av  ++ ++ll++aG+G+GKTrvl+h++a+l+++++v+p ei++++ft++Aa e++er+++l ++       +T+H+  +                
  KIR63073.1  43 QRDAV-VHAGSPLLIVAGAGSGKTRVLTHRIAYLLAARDVHPGEIIAITFTNKAAGEMKERVTQLVGPrarlmwVSTFHSACVrilraehehaglkssf 140
                 89999.99******************************************************999999***********9988**************** PP

      AAA_19  78 ............................................................................ldfddlltealelle..eaeeek 98 
                                                                                             ldfddl++++++l++    +  +
  KIR63073.1 141 siydaddsrrlmqlvareldldpkryparglaaqvsnlknelvdpeefagrakgpneralaeaytlyqrrlreahaLDFDDLIMTTVHLFQshP-HVAE 238
                 ***********************************************************************************99999998742.3445 PP

      AAA_19  99 klqeee.llivDEfqdvdelqyrLlkallgekkk......lllvGDpdQliyvfr 146
                   ++++ +++vDE+qd++  qy+L+k+l+ ++++      l++vGD+dQ+iy+fr
  KIR63073.1 239 GYRRRFrHVLVDEYQDTNHAQYTLIKELV-SGTEgiepaeLCVVGDADQSIYAFR 292
                 5678888**********************.5544488888*************97 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.6
      AAA_19 130 kklllvGDpdQliy 143
                 +++ lv D+dQ ++
  KIR63073.1 576 EQVALVADADQIPS 589
                 56899999999987 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.3   8.2e-14   2.1e-10       2      51 ..     598     656 ..     597     657 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 8.2e-14
    UvrD_C_2   2 ayaltihkaQGsefpaVivfdpd.laaarmgel........rrrlLYtavTRAreklil 51 
                 ++ +t h a+G+efp+V+++  +    +   +l         rrl+Y+++TRAr++l+l
  KIR63073.1 598 VTLMTLHTAKGLEFPVVFLTGLEdGVFPHLRALgdtreleeERRLAYVGITRARQRLYL 656
                 5789***************9877444444444489999*******************98 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     8e-08   0.00021       2      66 ..      39     103 ..      38     143 .. 0.81
   2 !   11.2   0.0   8.5e-05      0.22      76     169 ..     229     332 ..     197     348 .. 0.71
   3 ?   -4.1   0.0       4.2   1.1e+04     118     130 ..     577     589 ..     567     589 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 8e-08
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaa.g...grviglAptgkaAkvLaeel 66 
                 ln  Q++av ++ +s+    +++++AG+GKt +l++  + + aa     g++i+++ t+kaA +++e +
  KIR63073.1  39 LNGPQRDAVVHA-GSP---LLIVAGAGSGKTRVLTHRIAYLLAArDvhpGEIIAITFTNKAAGEMKERV 103
                 788899999776.455...699************998555555525889*****************875 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 8.5e-05
      AAA_30  76 llkrlk.grarlepg.tllivDEagmv...dtkqlaallkaaekag.akvilvGDerQlasVeaGgvlrdlvea....agigtaeLtevvRqkeseera 164
                 l +++   ++ ++++ + ++vDE   +     + +++l++  e  + a++ +vGD +Q     +G+++r ++e     ++++t+ L++++R +++   a
  KIR63073.1 229 LFQSHPhVAEGYRRRfRHVLVDEYQDTnhaQYTLIKELVSGTEGIEpAELCVVGDADQSIYAFRGATIRNILEFerdfTDARTILLEQNYRSTQTILNA 327
                 3334445345567777999****987722244556677777776445***********999999*******97655445569**********8755544 PP

      AAA_30 165 aalal 169
                 a   +
  KIR63073.1 328 ANAVI 332
                 44433 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 4.2
      AAA_30 118 kvilvGDerQlas 130
                 +v lv D +Q +s
  KIR63073.1 577 QVALVADADQIPS 589
                 799999*999986 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.038        97       3      21 ..      56      74 ..      54     125 .. 0.73
   2 ?   -0.8   0.0      0.41     1e+03      61      81 ..     242     262 ..     206     336 .. 0.69
   3 ?    8.6   0.0   0.00054       1.4     184     231 ..     599     655 ..     557     657 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.038
  Viral_helicase1  3 vhGvpGcGKStlirkllrt 21
                     + + +G+GK++++ + +  
       KIR63073.1 56 IVAGAGSGKTRVLTHRIAY 74
                     55679*******9988754 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.41
  Viral_helicase1  61 tkgkililDEylllhaGyill 81 
                       +++ +++DEy+  + ++  l
       KIR63073.1 242 RRFRHVLVDEYQDTNHAQYTL 262
                      457788999998776555444 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00054
  Viral_helicase1 184 evttvhevqGltfdkVtlvllketdlelis............esrenllvAlTRhrkslv 231
                        +t h + Gl+f++V l  l++     +             e+r   +v++TR+r++l+
       KIR63073.1 599 TLMTLHTAKGLEFPVVFLTGLEDGV---FPhlralgdtreleEERRLAYVGITRARQRLY 655
                      5799999999999999999886543...2224466777777788*************997 PP

>> Exonuc_V_gamma  Exodeoxyribonuclease V, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   6.9e-05      0.18     569     658 ..     536     628 ..     480     680 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 6.9e-05
                     ---SHHHHHHHHHHHHHHHHHHHHHHTT--S-...B-HHHHHHHHHHHHHH-EE-TTTTSSSEEEEE--TT----EEEEEEE--BTTTSS--- CS
  Exonuc_V_gamma 569 aedeeeeeelqelrealaelaeeaaaakfeqe...lslevvrelleerlsqesasqrfltGkvtfctllpmrsiPfrvvclLGlndgdfPrqd 658
                      +d+ + ++lqel +  +e +e  +a++ e e   l   + + +l +  +q +     + G vt+ tl   + + f vv l Gl+dg fP+ +
      KIR63073.1 536 PQDAGRVDNLQELVSVAREYTERVEALGEEGEratLAGFLEQVALVADADQIPSDDPDHQGVVTLMTLHTAKGLEFPVVFLTGLEDGVFPHLR 628
                     44444444455555555555555555554443210222233345777888888999999*******************************854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 5439.14
//
Query:       KIR63074.1  [L=149]
Description: hypothetical protein TK50_19465 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-07   30.5   2.9    8.2e-06   25.6   0.1    2.7  2  TPR_2            Tetratricopeptide repeat
    2.3e-07   30.3   1.7     0.0001   22.1   0.5    2.6  2  TPR_7            Tetratricopeptide repeat
    9.3e-07   29.1   6.5    2.1e-05   24.7   0.2    2.8  3  TPR_12           Tetratricopeptide repeat
    1.4e-06   28.5   0.3    0.00063   20.2   0.1    3.0  2  TPR_6            Tetratricopeptide repeat
    2.9e-06   26.9   0.1    2.7e-05   23.8   0.0    2.2  2  TPR_1            Tetratricopeptide repeat
      3e-06   27.0   0.0    0.00033   20.6   0.0    2.4  2  TPR_8            Tetratricopeptide repeat
    5.6e-06   26.5  17.2    0.00014   22.2   0.2    3.9  3  TPR_4            Tetratricopeptide repeat
    6.1e-06   26.6   1.0     0.0019   18.7   0.6    2.5  2  TPR_19           Tetratricopeptide repeat
    0.00014   21.6   5.6       0.13   12.2   0.4    2.6  3  TPR_10           Tetratricopeptide repeat
     0.0068   17.0   7.0      0.043   14.5   2.7    2.9  2  TPR_16           Tetratricopeptide repeat
     0.0083   16.4   0.0      0.023   15.0   0.0    1.8  1  TPR_17           Tetratricopeptide repeat
     0.0084   16.9   0.2     0.0084   16.9   0.2    3.0  3  TPR_14           Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.046   13.5   0.1      0.057   13.2   0.1    1.2  1  Haem_oxygenas_2  Iron-containing redox enzyme
      0.091   12.5   0.1        2.3    8.0   0.0    2.7  3  TPR_11           TPR repeat
       0.18   11.4   0.0       0.23   11.0   0.0    1.1  1  SusD_RagB        SusD family


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.027        32      10      26 ..      14      30 ..      13      31 .. 0.88
   2 !   25.6   0.1   6.8e-09   8.2e-06       3      27 ..      97     121 ..      95     123 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.027
       TPR_2 10 ayyklgdyeeAleafek 26
                ++ ++g+ e A+++f +
  KIR63074.1 14 LHHQQGRREAARDLFAQ 30
                789***********987 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 6.8e-09
       TPR_2   3 alynlGlayyklgdyeeAleafekA 27 
                 ++ nlG++y++lgd+++A+e++++A
  KIR63074.1  97 LHLNLGECYRRLGDLDRARECLRQA 121
                 799*********************9 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0057       6.9       7      24 ..      13      30 ..      12      42 .. 0.91
   2 !   22.1   0.5   8.5e-08    0.0001       2      27 ..      98     121 ..      96     136 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0057
       TPR_7  7 rlysrlGdyeeAielyeq 24
                +l++++G++e A +l+ q
  KIR63074.1 13 QLHHQQGRREAARDLFAQ 30
                69*************998 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 8.5e-08
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLa 27 
                 +lnL+++y+rlGd ++A e+++q  a
  KIR63074.1  98 HLNLGECYRRLGDLDRARECLRQ--A 121
                 59********************9..3 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   1.2    0.0099        12      12      29 ..      14      31 ..       9      74 .. 0.73
   2 ?   -0.5   0.1       1.3   1.5e+03      39      55 ..      58      74 ..      43      84 .. 0.62
   3 !   24.7   0.2   1.8e-08   2.1e-05       6      42 ..      98     133 ..      93     139 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0099
      TPR_12 12 vlrrlgrydeAlelleka 29
                +++++gr + A++l+ ++
  KIR63074.1 14 LHHQQGRREAARDLFAQV 31
                345555555555555555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.3
      TPR_12 39 pdhpltattlrnLgrly 55
                + h+++++ +r+L+ + 
  KIR63074.1 58 DVHEELLWDQRALAAAD 74
                45666666666666663 PP

  == domain 3  score: 24.7 bits;  conditional E-value: 1.8e-08
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhp 42 
                 + nl++++rrlg++d A+e+l++a++ + +l G+d +
  KIR63074.1  98 HLNLGECYRRLGDLDRARECLRQARAGIDAL-GDDAY 133
                 4599999999999999999999999999776.66654 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.032        38       9      28 ..      14      33 ..      11      34 .. 0.84
   2 !   20.2   0.1   5.2e-07   0.00063       4      26 ..      99     121 ..      96     123 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.032
                HHHHHHHHHHHHHHHHHHHH CS
       TPR_6  9 syrklgdtdkAlealerlik 28
                ++ ++g+ ++A++++ ++ +
  KIR63074.1 14 LHHQQGRREAARDLFAQVWE 33
                566789**********9966 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 5.2e-07
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerl 26 
                 ++l+++yr+lgd d+A+e l++ 
  KIR63074.1  99 LNLGECYRRLGDLDRARECLRQA 121
                 89******************997 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.42     5e+02      10      24 ..      14      28 ..      13      31 .. 0.84
   2 !   23.8   0.0   2.3e-08   2.7e-05       3      27 ..      97     121 ..      95     123 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.42
                HHHHTT-HHHHHHHH CS
       TPR_1 10 ayfklgkydeAleyy 24
                +++++g+ + A + +
  KIR63074.1 14 LHHQQGRREAARDLF 28
                789********9887 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 2.3e-08
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekA 27 
                  + nlG +y++lg++d A e+ ++A
  KIR63074.1  97 LHLNLGECYRRLGDLDRARECLRQA 121
                 689********************99 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.065        78       9      25 ..      13      29 ..       8      31 .. 0.85
   2 !   20.6   0.0   2.7e-07   0.00033       3      27 ..      97     121 ..      95     121 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.065
                HHHHHTT-HHHHHHHHH CS
       TPR_8  9 siylklgdyeeAkeyye 25
                ++++++g+ e+A   + 
  KIR63074.1 13 QLHHQQGRREAARDLFA 29
                799*********98776 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 2.7e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyeka 27 
                 +++nlg +y+ lgd++ A e++++a
  KIR63074.1  97 LHLNLGECYRRLGDLDRARECLRQA 121
                 679********************98 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   1.8   0.00042       0.5       9      26 .]      13      30 ..      12      30 .. 0.90
   2 ?    0.7   3.0         1   1.2e+03       4      20 ..      68      84 ..      67      85 .. 0.88
   3 !   22.2   0.2   1.1e-07   0.00014       1      26 []      95     120 ..      95     120 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00042
       TPR_4  9 rallalGdldeAraller 26
                ++++++G+ ++Ar+l+++
  KIR63074.1 13 QLHHQQGRREAARDLFAQ 30
                68************9876 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1
       TPR_4  4 llaLArallalGdldeA 20
                +++ A  ll  G+ ++A
  KIR63074.1 68 RALAAADLLTDGRVAQA 84
                57889999*******99 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 1.1e-07
       TPR_4   1 arallaLArallalGdldeAraller 26 
                 + ++l+L++ + +lGdld+Ar+ l++
  KIR63074.1  95 PSLHLNLGECYRRLGDLDRARECLRQ 120
                 5689********************98 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.014        17      35      54 ..      15      34 ..      12      42 .. 0.64
   2 !   18.7   0.6   1.6e-06    0.0019      23      52 ..      93     122 ..      64     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.014
      TPR_19 35 llalgqldeAealLdalpee 54
                + ++g+ ++A++l ++++ee
  KIR63074.1 15 HHQQGRREAARDLFAQVWEE 34
                55666666666666666655 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.6e-06
      TPR_19  23 knaearllLAeallalgqldeAealLdalp 52 
                  ++ + l+L e++  lg+ld A+++L ++ 
  KIR63074.1  93 LYPSLHLNLGECYRRLGDLDRARECLRQAR 122
                 48899*********************9875 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   0.00014      0.16       2      29 ..       5      32 ..       4      34 .. 0.83
   2 ?   -3.2   0.1       7.7   9.2e+03      24      30 ..      65      71 ..      58      73 .. 0.56
   3 !   12.2   0.4    0.0001      0.13       7      30 ..     100     123 ..      99     131 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
      TPR_10  2 AsslnNLanalrqrgrydeAealleeal 29
                ++  n    +++q+gr+++A++l+ ++ 
  KIR63074.1  5 LTRINEGVQLHHQQGRREAARDLFAQVW 32
                66667777899*************9986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.7
      TPR_10 24 lleeala 30
                + ++ala
  KIR63074.1 65 WDQRALA 71
                4455555 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.0001
      TPR_10   7 NLanalrqrgrydeAealleeala 30 
                 NL+  +r++g++d+A++ l++a a
  KIR63074.1 100 NLGECYRRLGDLDRARECLRQARA 123
                 99999****************976 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.096   1.1e+02      43      58 ..      14      29 ..      12      34 .. 0.72
   2 !   14.5   2.7   3.6e-05     0.043      33      63 ..      94     123 ..      63     132 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.096
      TPR_16 43 aalrqgrlaeAaalyr 58
                ++ +qgr ++A++l++
  KIR63074.1 14 LHHQQGRREAARDLFA 29
                6778888888886665 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.6e-05
      TPR_16  33 aaeAllllgdaalrqgrlaeAaalyraalra 63 
                  +  +l+lg+++ r+g+l++A++ +r a  a
  KIR63074.1  94 YPSLHLNLGECYRRLGDLDRARECLRQAR-A 123
                 5679******************9999984.4 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.9e-05     0.023      13      34 .]      95     116 ..      92     116 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-05
      TPR_17  13 adaynnLAelllknGdlmtArq 34 
                 + ++ nL+e+++++Gdl++Ar+
  KIR63074.1  95 PSLHLNLGECYRRLGDLDRARE 116
                 56899***************96 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1      0.12   1.4e+02       9      27 ..      13      31 ..      12      39 .. 0.87
   2 ?   -1.1   0.5       4.2     5e+03       5      19 ..      68      83 ..      63      84 .. 0.50
   3 !   16.9   0.2     7e-06    0.0084       3      29 ..      97     123 ..      95     139 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.12
      TPR_14  9 eallalGdpdeAiallrra 27
                +++ ++G+ ++A++l+ ++
  KIR63074.1 13 QLHHQQGRREAARDLFAQV 31
                68899**********9875 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 4.2
      TPR_14  5 lalaea.llalGdpde 19
                +ala+a ll+ G+ ++
  KIR63074.1 68 RALAAAdLLTDGRVAQ 83
                3444333556666655 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 7e-06
      TPR_14   3 allalaeallalGdpdeAiallrrala 29 
                 ++l l+e +++lGd+d+A+++lr+a a
  KIR63074.1  97 LHLNLGECYRRLGDLDRARECLRQARA 123
                 67889*******************965 PP

>> Haem_oxygenas_2  Iron-containing redox enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   4.7e-05     0.057      23      85 ..      17      76 ..       7     129 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.7e-05
  Haem_oxygenas_2 23 srltdrevkrallenlsEElGdgdlernHvelyrrllkalGldeeplealpelpetlalinlf 85
                     ++   re+ r+l++ ++EE G+ + +  Hv ++++ ++++  d +++  +++   +la+ +l+
       KIR63074.1 17 QQG-RREAARDLFAQVWEEIGGERGDPLHVCVLAHSMADVQDDVHEELLWDQR--ALAAADLL 76
                     333.59*********************************99666666555555..44444443 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.4   1.7e+03       4      13 ..      15      24 ..      13      29 .. 0.77
   2 ?    5.1   0.0     0.015        18      27      42 .]      94     109 ..      93     109 .. 0.91
   3 ?    8.0   0.0    0.0019       2.3       2      20 ..     103     121 ..     102     123 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.4
      TPR_11  4 yyeqGkyeeA 13
                 ++qG+ e+A
  KIR63074.1 15 HHQQGRREAA 24
                6788988887 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.015
      TPR_11  27 naeayynLGlayykqG 42 
                 ++++++nLG+ y ++G
  KIR63074.1  94 YPSLHLNLGECYRRLG 109
                 79********998887 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0019
      TPR_11   2 dayyeqGkyeeAieaYkkA 20 
                   y+ +G+++ A e++++A
  KIR63074.1 103 ECYRRLGDLDRARECLRQA 121
                 5699**************9 PP

>> SusD_RagB  SusD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00019      0.23     163     203 ..      98     135 ..      94     147 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHT-HHH.HHHHHHHHHHHTTS----CGCSBT CS
   SusD_RagB 163 lLmyAEAlnelggtteeaietinkvRaRAgipaltdaaykt 203
                  L+  E++ +lg+ +  a+e++++  aRAgi+al d+ay +
  KIR63074.1  98 HLNLGECYRRLGDLDR-ARECLRQ--ARAGIDALGDDAYGQ 135
                 69999***********.******9..89********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1022.20
//
Query:       KIR63075.1  [L=263]
Description: peptidase M23 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-32  109.8   3.4    8.1e-32  109.3   3.4    1.2  1  Peptidase_M23    Peptidase family M23
     0.0059   16.5   0.3       0.36   10.8   0.1    2.3  2  RnfC_N           RnfC Barrel sandwich hybrid domain
  ------ inclusion threshold ------
       0.08   12.8   1.2        2.9    7.8   0.3    2.8  3  Biotin_lipoyl_2  Biotin-lipoyl like
       0.12   11.9   3.1       0.17   11.5   3.1    1.1  1  SR-25            Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   3.4   1.8e-35   8.1e-32       3      91 ..     154     243 ..     152     250 .. 0.92

  Alignments for each domain:
  == domain 1  score: 109.3 bits;  conditional E-value: 1.8e-35
                    ESSEEEEETTT-EEEESSSEEEEEEEE.ETTTEEEEEEEECTCEEEEEEEESEESS-TTEEE-TTCEEEEEBSTSSCSSSEEEEEEEETT CS
  Peptidase_M23   3 hkGidiaapkgtpVlAaadGtVvfagk.kegyGnvviidhgdgystlyahlskisvkegqkVkaGqvIGtvgstgrstgphLhfeirkng 91 
                    h Gid+a+p+gtp++Aaa+GtVv+ag+  +gyG  v +dhg+gy t yah s+++v +g+kVkaGqvIG+ gstg+stgphLhfe+++ +
     KIR63075.1 154 HAGIDFAMPAGTPIHAAAAGTVVKAGDvGDGYGISVFVDHGNGYLTHYAHQSRTAVGVGDKVKAGQVIGYEGSTGDSTGPHLHFEVHQGQ 243
                    9**************************7669*******************************************************9732 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.015        67      67      79 ..     165     177 ..     116     183 .. 0.87
   2 !   10.8   0.1   8.1e-05      0.36      37      61 ..     200     224 ..     198     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.015
      RnfC_N  67 apvhasvsGtVka 79 
                 +p+ha  +GtV++
  KIR63075.1 165 TPIHAAAAGTVVK 177
                 69*********97 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 8.1e-05
      RnfC_N  37 hiGapakplvkvgdkVlkGqkiaea 61 
                 h  ++ +  v vgdkV+ Gq+i+ +
  KIR63075.1 200 HYAHQSRTAVGVGDKVKAGQVIGYE 224
                 667788899*************976 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.036   1.6e+02      21      29 ..     173     181 ..     170     181 .. 0.89
   2 ?    7.8   0.3   0.00064       2.9      18      30 ..     209     221 ..     206     223 .. 0.86
   3 ?   -1.4   0.0      0.48   2.2e+03      24      36 ..     239     251 ..     238     256 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.036
  Biotin_lipoyl_2  21 GqrVkaGdv 29 
                      G +VkaGdv
       KIR63075.1 173 GTVVKAGDV 181
                      889*****8 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00064
  Biotin_lipoyl_2  18 VkdGqrVkaGdvL 30 
                      V  G+ VkaG+v+
       KIR63075.1 209 VGVGDKVKAGQVI 221
                      5569********9 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.48
  Biotin_lipoyl_2  24 VkaGdvLaelDsr 36 
                      V++G+   ++D+ 
       KIR63075.1 239 VHQGQMWNQIDPA 251
                      8999988888876 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.1   3.8e-05      0.17      50     105 ..      66     121 ..      44     131 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.8e-05
       SR-25  50 erskekkkkkrrrssssssssssssssssssssssssddrkkrgkkkdkkkkkkkk 105
                  r +  ++  r +++s+s  +s s+ s s ss+s s    k ++k k k k   k 
  KIR63075.1  66 ARAEAAARADRAARESASPAASPSAVSPSPSSASPSPTATKATAKPKPKPKPTPKP 121
                 44555555555556666666666666666666666666655555555543332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       937  (0.0522617); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1827.45
//
Query:       KIR63076.1  [L=237]
Description: peptidase M23 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-31  107.8   2.3    4.5e-31  106.9   2.3    1.5  1  Peptidase_M23    Peptidase family M23
     0.0022   17.8   0.3     0.0052   16.6   0.3    1.6  1  Biotin_lipoyl_2  Biotin-lipoyl like


Domain annotation for each model (and alignments):
>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   2.3     5e-35   4.5e-31       2      96 .]     118     212 ..     117     212 .. 0.99

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 5e-35
                    EESSEEEEETTT-EEEESSSEEEEEEEEETTTEEEEEEEECTCEEEEEEEESEESS-TTEEE-TTCEEEEEBSTSSCSSSEEEEEEEETTEEE-C CS
  Peptidase_M23   2 fhkGidiaapkgtpVlAaadGtVvfagkkegyGnvviidhgdgystlyahlskisvkegqkVkaGqvIGtvgstgrstgphLhfeirkngkavdp 96 
                     h+Gid+ ap+gtp +A+ +GtV++ag+ +gyG  vi++h+dg + +y+h s++svkegq+VkaG+++G vg+tg+s g+hLh ei+ ng+++dp
     KIR63076.1 118 LHTGIDLVAPEGTPYVAIHEGTVTKAGWFGGYGYAVIVKHADGSEAIYGHSSAVSVKEGQQVKAGDQLGLVGNTGHSYGSHLHLEIHVNGDPLDP 212
                    69*******************************************************************************************98 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.3   5.8e-07    0.0052      15      30 ..     170     185 ..     166     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.8e-07
  Biotin_lipoyl_2  15 qlnVkdGqrVkaGdvL 30 
                      ++ Vk+Gq+VkaGd L
       KIR63076.1 170 AVSVKEGQQVKAGDQL 185
                      79************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1696.63
//
Query:       KIR63077.1  [L=134]
Description: methylmalonyl-CoA mutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-24   84.5   0.9    6.4e-24   84.3   0.9    1.1  1  B12-binding  B12 binding domain
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.013   15.2   0.0    1.1  1  QRPTase_C    Quinolinate phosphoribosyl transferase, C-termin


Domain annotation for each model (and alignments):
>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.9   7.2e-28   6.4e-24       1     114 [.       5     116 ..       5     122 .. 0.85

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 7.2e-28
  B12-binding   1 ikvllatvggdlhplGlavlaaalrdagfeVqllganvenedivaairaekpdvvglSalltsqleavkelvellkrirp.rvkvvvGGahpsldpee 97 
                  i+v++a+ g d h++G++v+a+alrdag+eV+++g+ +++e+iv+ +++e++d+vglS+l++++++ ++++vell ++++ ++ v+ GG++p +d  e
   KIR63077.1   5 IRVVVAKPGLDGHDRGAKVVARALRDAGMEVIYTGLHQTPEQIVETAIQEDADAVGLSVLSGAHMTLFRRVVELLGERDAqDIVVFGGGIVPDADIPE 102
                  589***********************************************************************544444177777788888888777 PP

  B12-binding  98 tleaklgiddvvvgege 114
                   le+ lg +  ++  g 
   KIR63077.1 103 -LEQ-LG-VKKIFTPGA 116
                  .444.78.555666665 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   1.5e-06     0.013      92     160 ..      47     119 ..      20     125 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHT-SEEEEES--H...HHHHHHHHHH.HHHSTTSEEEEESS--TTTHHHHHCTT-SEEEECHHCHT CS
   QRPTase_C  92 eleevleaeadiimLDnfsv...eelkkaveel.keknkrvlievSGgvtlenveeyaksgvdvisvgalths 160
                  +e ++++ ad + L  +s    + ++++ve+l ++ +++++++  G v + ++ e+ + gv+ i++  +t++
  KIR63077.1  47 IVETAIQEDADAVGLSVLSGahmTLFRRVVELLgERDAQDIVVFGGGIVPDADIPELEQLGVKKIFTPGATTQ 119
                 367788888999999888553338899******5555555999999999999**********99987444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 958.83
//
Query:       KIR63078.1  [L=392]
Description: succinyl-CoA synthetase subunit beta [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-67  226.4   0.7    3.7e-67  225.8   0.7    1.3  1  ATP-grasp_2  ATP-grasp domain
    6.4e-13   48.8   1.8    1.8e-12   47.4   0.3    2.3  2  Ligase_CoA   CoA-ligase
    1.3e-09   37.8   1.6    2.5e-09   36.9   1.6    1.5  1  ATP-grasp_5  ATP-grasp domain
     0.0011   18.7   0.0     0.0025   17.6   0.0    1.6  1  GARS_A       Phosphoribosylglycinamide synthetase, ATP-grasp 
      0.008   15.7   1.3      0.016   14.7   1.3    1.6  1  CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP bindin


Domain annotation for each model (and alignments):
>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.8   0.7     1e-70   3.7e-67       1     201 [.       2     194 ..       2     195 .. 0.99

  Alignments for each domain:
  == domain 1  score: 225.8 bits;  conditional E-value: 1e-70
                  BE-HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHTSSSEEEEE--SSSTCCCTTCEEEESSHHHHHHHHHCCTTSEEE-TTS-TT-EEE--EEEE CS
  ATP-grasp_2   1 nlhEyqakeilakygvkvpegevaesaeeaeeaakklgekelvvKaQvlaGGRGKagGvklvkskeeakeaakellgkelvtkqtgkeGkkvekvlve 98 
                  +l+Eyq++++++++g++v  g va+++eea+++a++lg+++ vvKaQv++GGRGKagGvkl++ ++e  + a ++lg++++       G++v+kv+++
   KIR63078.1   2 DLYEYQGRDLFERHGLPVLAGGVANTPEEARAIAERLGGRV-VVKAQVKVGGRGKAGGVKLAEGTDETVARATDILGMDIK-------GHTVHKVMIT 91 
                  59**************************************9.***************************************.......********** PP

                  E---ECEEEEEEEEEETTTTEEEEEEESSTTS-HHHHHHH-GGGEEEEEEBTTTB--HHHHHHHHHHCT--CHHHHHHHHHHHHHHHHHHHTTEEEEE CS
  ATP-grasp_2  99 ealdikkElYlsivlDraskkvvviaSseGGvdiEevaakkPekiikvaidpakglkeeqareiakklglekelvkkaakiikklyklfveldatlvE 196
                   + d+++E+Y+s++lDra+++++ iaS  GG+diE+vaa +P+k++k++id++kg++e++arei++++g++++++++++++ + l+++fv++datlvE
   KIR63078.1  92 VTADVAEEYYFSYLLDRANRTFLCIASVAGGMDIEQVAADTPDKVVKAPIDAVKGVDEAKAREIVTAAGFPADVADQVVEVAVGLWQAFVAEDATLVE 189
                  ************************************************************************************************** PP

                  EEEEE CS
  ATP-grasp_2 197 iNPLv 201
                  +NPL+
   KIR63078.1 190 VNPLA 194
                  ****7 PP

>> Ligase_CoA  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.25     9e+02     105     148 ..     109     152 ..      78     157 .. 0.73
   2 !   47.4   0.3   4.9e-16   1.8e-12       3     131 ..     256     362 ..     254     385 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.25
                 ..--S-EEEEEECTTHH.....HHHHHHHTTTSSEEE-SSHHHH CS
  Ligase_CoA 105 egrelpvvarvaGteadpqelseqakaleeagveiasskaqalr 148
                 ++r+   +a+vaG  +  q   +  +++ +a +  ++  ++a +
  KIR63078.1 109 ANRTFLCIASVAGGMDIEQVAADTPDKVVKAPIDAVKGVDEAKA 152
                 67888999999999888888888888888888777777776665 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 4.9e-16
                 SSHHHHHHHHHHHHHT..............T--BSEEEE-TSS--..........HHHHHHHHHHHHS-TT-SEEEEEEEESSSEHHHHHHHHHHHHHH CS
  Ligase_CoA   3 nGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkaike 101
                 nG++L + ++d++  a          +   + ++++++d+G++a              + + l+++++dp+v+ +++++++G+ a++++a+++++a+  
  KIR63078.1 256 NGAGLVMSTLDVVAYA---------GERHGNVKPANFLDIGGGAS----------AAVMANGLEIVLSDPSVRSVFVNVFGGITACDEVANGIVQALAL 335
                 7999999999999999.........44555789************..........7******************************************* PP

                 TT.....--S-EEEEEECTTHH.....HHHHH CS
  Ligase_CoA 102 aka..egrelpvvarvaGteadpqelseqaka 131
                 +++  e  ++p+v+r+ G++a+     +++++
  KIR63078.1 336 LEQrgEKVTKPLVVRLDGNNAE-----AGRAI 362
                 *996677788***********9.....44444 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   1.6   6.9e-13   2.5e-09      10     222 .]       3     210 ..       1     210 [. 0.87

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 6.9e-13
  ATP-grasp_5  10 LteaeakelleaygipvvetrlassaeeaveaaeeigypvvlKivspdilhKtdvgGvrlnlkdaeevraaaeeilervkekspeariegvlVqemak 107
                  L+e++ ++l+e  g+pv+   +a+++eea ++ae++g  vv+K +++ +  + ++gGv+l   ++e v++a + +  ++k     + +++v++   a+
   KIR63078.1   3 LYEYQGRDLFERHGLPVLAGGVANTPEEARAIAERLGGRVVVKAQVK-VGGRGKAGGVKLAEGTDETVARATDILGMDIKG----HTVHKVMITVTAD 95 
                  89******************************************975.999*********888999999999988888855....8999999999999 PP

  ATP-grasp_5 108 rggrElivgvteDpvFGpvilfG..lGGtavevlkdvavalpplnstlareliertkaskllkgvrgekkadlaaleellvrlsqLvvdlpeIreldi 203
                    + E   ++  D      +++   +GG+ +e ++  + + +     +a + +++ ka ++++      +   ++++e+ v l q  v     + +++
   KIR63078.1  96 -VAEEYYFSYLLDRANRTFLCIAsvAGGMDIEQVAADTPDKVVKAPIDAVKGVDEAKAREIVTAAGFP-ADVADQVVEVAVGLWQAFVA-EDATLVEV 190
                  .8888888888888777766665227*****9988888888889999999999999999999985555.55578999999999887776.678999** PP

  ATP-grasp_5 204 nPllveeeg.vvalDarirl 222
                  nPl  +++g ++ lDa+++l
   KIR63078.1 191 NPLAKTGDGkLLLLDAKVTL 210
                  *******988*******986 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   7.1e-07    0.0025       7      86 ..       9      91 ..       5     117 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 7.1e-07
                HHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT....-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEE CS
      GARS_A  7 kdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagK....gvivakseeealkavkeilekkkfGeagekvviE 86
                +dl++++g+p     + + peea+++ e+++ ++ VvKa+   +g+    gv++a+ ++e+++ +++il     G++ +kv+i 
  KIR63078.1  9 RDLFERHGLPVLAGGVANTPEEARAIAERLGGRV-VVKAQVKVGGRgkagGVKLAEGTDETVARATDILGMDIKGHTVHKVMIT 91
                799******************************9.9999877766522447******************************996 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   1.3   4.4e-06     0.016       9      69 ..      12      74 ..       6     192 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.4e-06
                 HHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTE....EEESSHHHHHHHHHH CS
  CPSase_L_D2  9 lkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGm....rvarneeelaelvkk 69
                  ++ + pv  +  a  +t eea aia+++g  v++ka + +GG+G     ++a+ ++e+++ ++ 
   KIR63078.1 12 FERHGLPVLAGGVA--NTPEEARAIAERLGGRVVVKAQVKVGGRGKaggvKLAEGTDETVARATD 74
                 56667777777777..9***************************852212556655555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2872.84
//
Query:       KIR63079.1  [L=295]
Description: succinyl-CoA synthetase subunit alpha [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-26   90.6   3.7    1.3e-25   89.9   2.1    2.1  2  CoA_binding    CoA binding domain
    6.3e-15   55.3   0.5    1.4e-14   54.2   0.5    1.6  1  Ligase_CoA     CoA-ligase
    6.8e-11   42.1   0.1    1.2e-10   41.3   0.1    1.4  1  Succ_CoA_lig   Succinyl-CoA ligase like flavodoxin domain
    2.7e-06   27.9   0.0    1.2e-05   25.7   0.0    2.0  2  CoA_binding_2  CoA binding domain
     0.0086   16.9   0.2       0.05   14.4   0.1    2.1  2  GFO_IDH_MocA   Oxidoreductase family, NAD-binding Rossmann fo
  ------ inclusion threshold ------
      0.057   14.0   0.8       0.12   13.0   0.1    1.8  2  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
      0.072   12.5   0.3        3.1    7.2   0.1    2.3  2  Epimerase      NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   2.1     5e-29   1.3e-25       1      96 []       6     103 ..       6     103 .. 0.98
   2 ?   -0.7   0.0      0.95   2.4e+03       8      25 ..     179     196 ..     154     230 .. 0.72

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 5e-29
                  CTTEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEET....TEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-SEEEEES CS
  CoA_binding   1 dkdtkviviGagglgiaglyhfkeklkygikavfgvnprkvgtevl....glpvyksvdeleektevdvavitvPaesaqeavdelveagikgiviit 94 
                  +kd+kviv+G++g+  +g  h++++l  g+++v+g+nprk+g+ v+     lpv+ +v++++++t++dv+vi+vP+++ ++av+e+++agi+++v+it
   KIR63079.1   6 TKDSKVIVQGMTGS--EGSKHTRRMLAAGTNVVGGTNPRKAGQSVDfdgtALPVFATVADAMAETGADVTVIFVPPQFTKAAVIEAIDAGIPLAVVIT 101
                  5899**********..********************************************************************************** PP

                  ST CS
  CoA_binding  95 eg 96 
                  eg
   KIR63079.1 102 EG 103
                  97 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.95
                  EETTTSHHHHHHHHHHHH CS
  CoA_binding   8 viGagglgiaglyhfkek 25 
                  ++G+gg  i g++h++  
   KIR63079.1 179 CVGIGGDPIIGTTHIDAL 196
                  455555555555554444 PP

>> Ligase_CoA  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.5   5.3e-18   1.4e-14       2     151 ..     158     274 ..     157     276 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 5.3e-18
                 ESSHHHHHHHHHHHHHT..............T--BSEEEE-TSS--..........HHHHHHHHHHHHS-TT-SEEEEEEEESSSEHHHHHHHHHHHHH CS
  Ligase_CoA   2 vnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkaik 100
                 +++GtL+y  m+ +++                 + ++++++G+d            +t++i+al  + adp +++i++ +++G g +e+ aae++k  +
  KIR63079.1 158 SKSGTLTYQMMYELRDI----------------GFSTCVGIGGDPII---------GTTHIDALAAFEADPDTDAIVMIGEIG-GDAEERAAEFIKS-N 229
                 67888888888888888................889**********7.........9**************************.**********985.4 PP

                 HTT...--S-EEEEEECTTHH.....HHHHHHHTTTSSEEE-SSHHHHHHH CS
  Ligase_CoA 101 eakaegrelpvvarvaGteadpqelseqakaleeagveiasskaqalraak 151
                  +      +pvv ++aG +a+p++ +++a+a+ ++++ +a++k++al+a +
  KIR63079.1 230 VT------KPVVGYIAGFTAPPGKTMGHAGAIISGSAGTAEAKKEALEAVG 274
                 44......5**************************************9987 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.1   4.7e-14   1.2e-10       2     133 ..     152     286 ..     151     290 .. 0.80

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 4.7e-14
  Succ_CoA_lig   2 GkialisqSGalalalldwaasrglgfskvvslGn..eadvdvadlleylaedpetkvillylEsirdgrkflsaarraarkkpvvvlksGrseaga 96 
                   G+i+l+s+SG+l  +++  +++  +gfs++v +G    + ++  d l+++++dp+t++i++  E  +d+++ ++   + + +kpvv + +G ++   
    KIR63079.1 152 GRIGLVSKSGTLTYQMMYELRD--IGFSTCVGIGGdpIIGTTHIDALAAFEADPDTDAIVMIGEIGGDAEERAAEFIKSNVTKPVVGYIAGFTAPPG 246
                   99**************999986..9*********9334667788************************87666666666668*********876555 PP

  Succ_CoA_lig  97 raaashtgal....agsdavvdaafrqaGvlrvdsleelfd 133
                   ++ + h ga+    ag  ++ ++a++ +Gv + ++ +e ++
    KIR63079.1 247 KT-MGHAGAIisgsAGTAEAKKEALEAVGVKVGKTPTETAK 286
                   44.56666643333677888888999999988888777665 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   4.8e-09   1.2e-05      43     114 ..      55     134 ..      12     136 .. 0.76
   2 ?   -0.2   0.0      0.54   1.4e+03      64      64 ..     227     227 ..     154     295 .] 0.49

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 4.8e-09
                    EES----T......T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT......---HHHHHHHHHTT-EEE.ES-HHHH CS
  CoA_binding_2  43 ekvyaslaed..pepvdlvdvftppeatpeivkealalgakavwlqpg......sedeeaaelaeeagirvvgdrCilve 114
                     +v+a++a++  ++  d+ ++f+pp+ t + v ea+++g++ +++  +      +    a+++a+ ++ r++g++C++++
     KIR63079.1  55 LPVFATVADAmaETGADVTVIFVPPQFTKAAVIEAIDAGIPLAVVITEgvpvhdTAAFWAYNVAKGERTRIIGPNCPGIA 134
                    469999998458999************************776665555598666666667888888***********997 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.54
                    - CS
  CoA_binding_2  64 p 64 
                    +
     KIR63079.1 227 K 227
                    2 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1     2e-05      0.05       3      90 ..      11      99 ..       9     113 .. 0.83
   2 ?   -0.2   0.0      0.68   1.7e+03       5      42 ..     182     222 ..     178     234 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2e-05
                  EEEETT.SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-..EEE CS
  GFO_IDH_MocA  3 vaiiGa.Gkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaaleagk..hvl 90
                  v + G+ G  gskh r + ++  +++vv+  +p+++ +    + + +++++ +++ +a++ +d+ ++ +p++  ++ +++a+ ag+  +v+
    KIR63079.1 11 VIVQGMtGSEGSKHTRRMLAA--GTNVVGGTNPRKAGQSVDFDGTALPVFATVADAMAETGADVTVIFVPPQFTKAAVIEAIDAGIplAVV 99
                  556677455589998888887..8889998888887666557888999**********99*************************977444 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.68
                   EETTSHHHHHHHHHHHHTTTTE...EEEEEECSSHHHHHHH CS
  GFO_IDH_MocA   5 iiGaGkigskhlrplnesqrle...evvalldpdaeraeav 42 
                   i G   ig+ h+ +l + + +     +v + +++  + e++
    KIR63079.1 182 IGGDPIIGTTHIDALAAFEADPdtdAIVMIGEIGGDAEERA 222
                   44444558888766665555442235555555555444444 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   4.7e-05      0.12       7      81 ..      17      89 ..      12     104 .. 0.73
   2 ?   -2.4   0.0       2.9   7.5e+03      34      52 ..     261     279 ..     249     291 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.7e-05
                   TSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC....-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHC CS
  F420_oxidored  7 aGnmgealasgllaagaqpheivvansrnpekaeelaeelg....vkvtavdneeaaeeadvvvlavkpedveevlsel 81
                   +G+ g+  ++++laag   +++v +   np ka +  +  g    v +t  + + a + adv v+ v+p+ +++++ e+
     KIR63079.1 17 TGSEGSKHTRRMLAAG---TNVV-G-GTNPRKAGQSVDFDGtalpVFATV-ADAMAETGADVTVIFVPPQFTKAAVIEA 89
                   79999999********...****.6.667777666655444443233333.55555559***********999876555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.9
                    SSCCCHHHHHHHHC-EEEC CS
  F420_oxidored  34 rnpekaeelaeelgvkvta 52 
                     + e  +e+ e++gvkv +
     KIR63079.1 261 GTAEAKKEALEAVGVKVGK 279
                    3333333444455555544 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0012       3.1       1      71 [.      11      76 ..      11     118 .. 0.79
   2 ?    3.3   0.0     0.019        48      50      93 ..     190     231 ..     187     239 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0012
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE- CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihl 71
                ++V G tG  Gs  ++++l++g +v+g ++ ++a+++      ++    l   + ++++++e+++d+ + +
  KIR63079.1 11 VIVQGMTGSEGSKHTRRMLAAGTNVVGGTNPRKAGQSV-----DFDGTALPVFATVADAMAETGADVTVIF 76
                6899*************************996666644.....5556666666677777777777776665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.019
                 TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTH CS
   Epimerase  50 ltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlq 93 
                  t+ +al+++ ++ + da++ ++ +gg a+  e++a+fi++n+ 
  KIR63079.1 190 TTHIDALAAFEADPDTDAIVMIGEIGGDAE--ERAAEFIKSNVT 231
                 57889999999999********88998887..9999******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 1934.41
//
Query:       KIR63080.1  [L=87]
Description: hypothetical protein TK50_19495 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00083   19.1   7.1     0.0035   17.1   7.1    1.9  1  DUF4190   Domain of unknown function (DUF4190)
  ------ inclusion threshold ------
      0.042   14.1   2.7      0.042   14.1   2.7    1.9  2  DUF456    Protein of unknown function (DUF456)
       0.05   13.7   0.7      0.061   13.4   0.7    1.2  1  DUF4234   Domain of unknown function (DUF4234)
       0.28    9.9   1.0       0.32    9.7   1.0    1.0  1  DUF2207   Predicted membrane protein (DUF2207)
       0.68    9.8  12.5       0.13   12.2   5.7    2.0  2  DUF5362   Family of unknown function (DUF5362)
        2.4    8.5   8.3        7.1    7.0   8.3    1.8  1  DUF4064   Protein of unknown function (DUF4064)


Domain annotation for each model (and alignments):
>> DUF4190  Domain of unknown function (DUF4190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   7.1   1.2e-06    0.0035       9      58 ..      22      71 ..      19      75 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.2e-06
     DUF4190  9 gilgllfl.iitgivavilGhvAlrqirrsgerGkglAiaGivlGwiglll 58
                g+lg++++ +++gi+++i+G+++ r  +r g+    l + +i+ G+i ++ 
  KIR63080.1 22 GVLGIILGlLCCGILGIIFGYLSIRDAKRYGQS-PVLGYLAIAFGVINIIG 71
                7889888669*******************9965.45555556666665555 PP

>> DUF456  Protein of unknown function (DUF456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   2.7   1.4e-05     0.042      56      88 ..      11      43 ..       9      45 .. 0.92
   2 ?    1.8   0.1     0.093   2.8e+02      50      74 ..      44      68 ..      42      79 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
      DUF456 56 raGaskrgligaivGaivGffllpplGlllgpf 88
                +aG+  r+++++++G+i+G++  ++lG+++g +
  KIR63080.1 11 QAGGRDRTTLWGVLGIILGLLCCGILGIIFGYL 43
                79*******************999*****9975 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.093
      DUF456 50 palgakraGaskrgligaivGaivG 74
                +++ akr+G s    + ai+ +++ 
  KIR63080.1 44 SIRDAKRYGQSPVLGYLAIAFGVIN 68
                6788899998888877777777664 PP

>> DUF4234  Domain of unknown function (DUF4234)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.7     2e-05     0.061       7      50 ..      26      66 ..      22      84 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2e-05
     DUF4234  7 ilLsivTlGIYslyWlykltrelnrlsgrkkttslllvflllsl 50
                i+L +  +GI ++++ y  +r+ +r+ +  +   +l+    +++
  KIR63080.1 26 IILGLLCCGILGIIFGYLSIRDAKRYGQS-PVLGYLAI--AFGV 66
                99**************************9.55554443..3443 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.0   0.00011      0.32     381     431 ..      21      76 ..      11      82 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00011
     DUF2207 381 kklsalglgliilglilillallllvll..........lvfllilllillliaiivlllfs 431
                 + +  ++lgl+++g+++i+++   +  l          +  l++l++++++i+ii  ++++
  KIR63080.1  21 WGVLGIILGLLCCGILGIIFG---Y--LsirdakrygqSPVLGYLAIAFGVINIIGSAILR 76 
                 222222223333333333333...2..24477899**999999999999999999988874 PP

>> DUF5362  Family of unknown function (DUF5362)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   5.7   4.2e-05      0.13       9      37 ..      19      46 ..      14      51 .. 0.87
   2 ?    2.4   0.5     0.048   1.4e+02      10      38 ..      56      71 ..      48      81 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.2e-05
     DUF5362  9 kilGvlliilGaltcLsIigiiigvllIi 37
                 ++Gvl iilG l c +I+gii g l I 
  KIR63080.1 19 TLWGVLGIILGLL-CCGILGIIFGYLSIR 46
                68*********76.66*********9995 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.048
     DUF5362 10 ilGvlliilGaltcLsIigiiigvllIiv 38
                +lG l+i +G++ ++              
  KIR63080.1 56 VLGYLAIAFGVINII-------------G 71
                455555555555444.............3 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   8.3    0.0024       7.1      61     102 ..      23      70 ..      15      84 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0024
     DUF4064  61 livlgvialiaivlgivgalllkknkk......vsGilfiiaailslf 102
                 ++ +++++l +++lgi++ +l  ++ k      v G+l i+++++ ++
  KIR63080.1  23 VLGIILGLLCCGILGIIFGYLSIRDAKrygqspVLGYLAIAFGVINII 70 
                 445666699999999998888777777799999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 686.61
//
Query:       KIR63081.1  [L=426]
Description: hypothetical protein TK50_19500 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2957.42
//
Query:       KIR63082.1  [L=177]
Description: Interferon-induced transmembrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-09   36.1  10.0    3.9e-09   36.1  10.0    1.6  1  DUF4190          Domain of unknown function (DUF4190)
  ------ inclusion threshold ------
       0.87    9.2   4.3        1.3    8.7   4.3    1.1  1  Tetraspanin      Tetraspanin family
        3.8    8.0   5.5         25    5.4   5.5    2.1  1  DUF202           Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> DUF4190  Domain of unknown function (DUF4190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1  10.0   6.5e-13   3.9e-09       2      62 .]      97     163 ..      96     163 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 6.5e-13
     DUF4190   2 AiasLvlgilgllf.....l.iitgivavilGhvAlrqirrsgerGkglAiaGivlGwigllllvll 62 
                  ++s++lgi+++ +     l +++gi+av++G++++++ ++    ++g+A +G+++G+ig +l vll
  KIR63082.1  97 GLVSMILGIASIPLvcclyLgVPVGIAAVVTGYLGRQKAAQGLASNDGQAKTGLICGAIGAGLGVLL 163
                 689*******998888999779*****************************************9985 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.3   0.00021       1.3       4      68 ..      95     171 ..      93     174 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00021
                  XXXXXXXXXXXXXXXXXXX.......XXXXXX.....XXX.....................XXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxx.......xxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin   4 llfffnllfwligivllav.......Gvwlrl.....khaeaalacllsesaedpailaillivvGvllfllgflGc 68 
                  +l ++++++ +++i l+++       G+ + +     +++ a+  + ++ +a+   i   +   +Gvllf+lg++G 
   KIR63082.1  95 TLGLVSMILGIASIPLVCClylgvpvGIAAVVtgylgRQKAAQGLASNDGQAKTGLICGAIGAGLGVLLFILGIVGN 171
                  5778888888888888888666555544444477777444455555556677777777777888888********95 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   5.5    0.0042        25      32      60 ..     122     169 ..      83     172 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0042
      DUF202  32 l...................tgepsalgkilglilivlgiltllvglv 60 
                                       +++++g i+g+i ++lg+l++++g+v
  KIR63082.1 122 IaavvtgylgrqkaaqglasNDGQAKTGLICGAIGAGLGVLLFILGIV 169
                 0333344445555556666555666779****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1314.99
//
Query:       KIR63083.1  [L=100]
Description: Interferon-induced transmembrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-18   67.2   2.8      1e-18   67.2   2.8    2.0  2  CD225          Interferon-induced transmembrane protein
  ------ inclusion threshold ------
      0.045   12.9   0.5      0.053   12.7   0.5    1.2  1  Peptidase_M56  BlaR1 peptidase M56
       0.17   11.7   9.4          4    7.3   5.4    2.2  2  DUF4190        Domain of unknown function (DUF4190)
       0.27   11.1   1.8       0.48   10.3   1.8    1.4  1  TMIE           TMIE protein


Domain annotation for each model (and alignments):
>> CD225  Interferon-induced transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   2.8   2.3e-22     1e-18       3      68 .]      14      78 ..       9      78 .. 0.95
   2 !    6.0   2.2    0.0029        13       6      26 ..      72      91 ..      72     100 .] 0.71

  Alignments for each domain:
  == domain 1  score: 67.2 bits;  conditional E-value: 2.3e-22
       CD225  3 kdylvwsifntlfcclplGivAlvySvkvrdrkmvGdvegAqsasstAkllniialvlgiiliill 68
                ++++++si+++++ ++pl+i A+++++kv+   ++Gd++gAq+a+ ++k+++ +al++gi++++++
  KIR63083.1 14 NNNMTMSIVAIFL-FWPLAIPAIINASKVNPLIQQGDYAGAQAAAAESKKWSKWALIVGIVWLVIV 78
                699******9996.************************************************9985 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0029
       CD225  6 lvwsifntlfcclplGivAlv 26
                +vw +++ ++c l  G+++++
  KIR63083.1 72 IVWLVIVLVCCAL-GGLAGIM 91
                5999*****9998.6666665 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   1.2e-05     0.053      76     117 ..      36      82 ..       9      90 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.2e-05
  Peptidase_M56  76 saaskvlddkas......alatdvkkvewktilkillliWivgalill 117
                    ++ask ++  ++      a+a++ ++ +w++ + i+ ++W+v++l+++
     KIR63083.1  36 INASK-VNPLIQqgdyagAQAAAAESKKWSKWALIVGIVWLVIVLVCC 82 
                    33333.23333334455688999999********************86 PP

>> DUF4190  Domain of unknown function (DUF4190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0016         7       7      45 ..      18      56 ..      16      58 .. 0.73
   2 ?    7.3   5.4   0.00088         4       4      27 ..      66      93 ..      63      98 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0016
     DUF4190  7 vlgilgllfliitgivavilGhvAlrqirrsgerGkglA 45
                 ++i+ ++++++++i+a+i        i++ + +G   A
  KIR63083.1 18 TMSIVAIFLFWPLAIPAIINASKVNPLIQQGDYAGAQAA 56
                57889887779*******977766666666666666666 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00088
     DUF4190  4 asLvlgilgllf...l.iitgivavilG 27
                ++L++gi++l++   +  ++g++++  G
  KIR63083.1 66 WALIVGIVWLVIvlvCcALGGLAGIMGG 93
                89*******9998876678888888765 PP

>> TMIE  TMIE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.8   0.00011      0.48       5      32 ..      56      83 ..      53      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
        TMIE  5 vfaglrvWhviaivllvvlaivillCCv 32
                ++a+ + W   a+++++v  +++l+CC 
  KIR63083.1 56 AAAESKKWSKWALIVGIVWLVIVLVCCA 83
                56778899999****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1093  (0.0609627); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 804.61
//
Query:       KIR63084.1  [L=206]
Description: phosphoribosylglycinamide formyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-46  158.5   0.0    1.6e-46  158.3   0.0    1.0  1  Formyl_trans_N  Formyl transferase


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.3   0.0   8.8e-51   1.6e-46       2     180 ..       9     187 ..       8     188 .. 0.99

  Alignments for each domain:
  == domain 1  score: 158.3 bits;  conditional E-value: 8.8e-51
                     EEEEEESESSHHHHHHHHHHHHTTSECEEEEEEESCTTEHCHHHHHHCCHCCCECHHCCSCCCCCCCHHHHHHHHCTT-SEEEEES--S---HHH CS
  Formyl_trans_N   2 kivvlisgtgsnlqalldalkkgsleadvvlvvsnkdkaaglekaeaasiptkvfeekkleprsqfeeelaeelkelkadlivlagymkllpkel 96 
                     +ivvl+sg+gsnlqallda+ +   +a vv+v  ++d++agl +a+a + pt+v   k+   r+  + +l+++++++++dl+v ag++kl+++e+
      KIR63084.1   9 RIVVLVSGSGSNLQALLDAAADPAYGARVVAVGADRDGIAGLDRAAAVGVPTFVERVKDHPTRADWDAALTRQVAAHRPDLVVSAGFLKLVGPEF 103
                     9********************************************************************************************** PP

                     HHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--SSSSTS-EEEEEEEE--TT--HHHHHHHHHHHHHHHHHHH CS
  Formyl_trans_N  97 vqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvdeelDtGailaqkkveiiaedtkeeleqrvadaehkalvea 180
                     ++a+  + ln H  LLP+f+G++  + al  G+k tG+t +fvd ++DtG+i+aq +v++  +d++e+l++r++ ae + lve 
      KIR63084.1 104 LAAFGDRYLNTHNTLLPAFPGIHGPRDALAYGVKITGATLFFVDAGMDTGPIVAQVAVPVCDDDDEETLTERIKSAERRQLVEQ 187
                     ******************************************************************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1479.60
//
Query:       KIR63085.1  [L=523]
Description: phosphoribosylaminoimidazolecarboxamide formyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.6e-114  381.6   0.6   3.2e-114  381.3   0.6    1.1  1  AICARFT_IMPCHas  AICARFT/IMPCHase bienzyme
    5.2e-24   84.3   0.1    1.7e-23   82.6   0.0    1.9  2  MGS              MGS-like domain


Domain annotation for each model (and alignments):
>> AICARFT_IMPCHas  AICARFT/IMPCHase bienzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.3   0.6  3.6e-118  3.2e-114       1     296 []     142     456 ..     142     456 .. 0.95

  Alignments for each domain:
  == domain 1  score: 381.3 bits;  conditional E-value: 3.6e-118
                      HHHTTTT-EEE-SGGGHHHHHHHHHCT.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......CSE...EEEEEEEEESSSSSTTS-EEEE CS
  AICARFT_IMPCHas   1 AAKNhksVtvvvdpadYeevleelkkgevsletrkklaakaFahtaaYDaaiaeylskq.......lpetlklslekkqkLrYGeNphQkaaly 87 
                      AAKNh+sV+vv+dpa Y e++++l +g ++l++r+ laa+aFa  a+YD a+a++ +++       +pe   lsl++++ LrYGeNphQ+aaly
       KIR63085.1 142 AAKNHASVAVVTDPAAYPELVAALGAGGFTLAQRRVLAARAFAAIAEYDVAVAQWCATTlapdaagWPEFAGLSLRRSAVLRYGENPHQAAALY 235
                      9*******************************************************8888888777668888999******************* PP

                      E-TT.STTHHH-EEEESS---HHHHHHHHHHHHHHCTSE...EEEEEETTEEEEEEEESSHHHHHHHHHCCSHHHHTTEEEEECCEE-HHHHHH CS
  AICARFT_IMPCHas  88 eeee.eeglakaeqlqGkelsynNllDadaalelvkefa...avaivKHanpcGvAvgetlaeAyekAlaaDpvSaFGgiialnrevdaetaee 177
                      ++ +  +gla+aeql+Gke+synN++Dadaa++++++fa   avai+KHanpcG+Avg+++a+A++kA+a+DpvSa+Gg+ia+nr+v+ae+a++
       KIR63085.1 236 ADPAsPAGLAQAEQLHGKEMSYNNYVDADAAWRAANDFAeqpAVAIIKHANPCGIAVGADVADAHRKAHACDPVSAYGGVIAVNRPVTAELARQ 329
                      9887899*******************************4457999************************************************* PP

                      HTTS-ECEEEECEE-CCHHHCCTTSSS-EEEE-SS-.....EEEEETTEEEEEE--G..TTCC...CSEEECSC---HHHHHHHHHHHHHCCCS CS
  AICARFT_IMPCHas 178 ikkefleviiApsfeeealeilkkkknlrvlelkee.....elrsvsgglLvqerdeakieee...elkvvtkkkpteeeledllfawkvvkhv 263
                      +++ f+ev++Ap+f+e+ale+l++kknlr+l++++      e r+v+gg+Lvq+rd+++ e +   +++++t ++++e++l+dl+faw++v++v
       KIR63085.1 330 VADVFTEVLVAPGFDEDALELLRAKKNLRLLRAPAYaplpaEWRQVTGGMLVQTRDAVDAEGDdpaNWRLATGEAADEATLRDLAFAWRAVRAV 423
                      *********************************88345667***************8777776777**************************** PP

                      -SS-EEEEETTEEEEEE-SSSSHHHHHHHHHHH CS
  AICARFT_IMPCHas 264 kSNaivlakdgqtvgiGaGqmsRvdsarlAvek 296
                      kSNai+lakdg+tvg+G+Gq++Rvdsa+lAv++
       KIR63085.1 424 KSNAILLAKDGATVGVGMGQVNRVDSAQLAVTR 456
                      ******************************975 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   1.9e-27   1.7e-23       1      94 [.      23     136 ..      23     137 .. 0.98
   2 ?   -1.7   0.1      0.39   3.5e+03       4      21 ..     501     518 ..     500     522 .. 0.86

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 1.9e-27
                 THHHHHHHHHHTTCEEEEEHHHHHHHHHTT--EEECCCCHSTGSGGTHCH..................HHHHHHHTTSCC...EEEEE--THHHHHHCH CS
         MGS   1 glvelakklkelgfellATgGTakllkeagipvtevvektgegerlggrv..................eildaikngeid...lvintlypfkatvakd 78 
                 glvela++l+++g+e+++Tg Ta ++++ag+pvt v+ +tg++e+l+grv                   + +++ +++i    l++ +lypf+ tva +
  KIR63085.1  23 GLVELAQALHAAGVEIVSTGSTASTVAAAGVPVTPVESVTGFPEILDGRVktlhplihgglladlrkpAHAAQLDEHGIAgidLLVSNLYPFQDTVA-S 120
                 69****************************************************************************99999*************9.9 PP

                 HHHHHHHHHHTTSHEE CS
         MGS  79 gykirraaenidIplp 94 
                 g+++++++e+idI++p
  KIR63085.1 121 GADVEECVEQIDIGGP 136
                 **************98 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.39
                 HHHHHHHHTTCEEEEEHH CS
         MGS   4 elakklkelgfellATgG 21 
                 e+a++ ke+g++l+ Tg+
  KIR63085.1 501 EVATACKEAGVTLYLTGT 518
                 789999********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3765.04
//
Query:       KIR63086.1  [L=286]
Description: methenyltetrahydrofolate cyclohydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-58  196.2   1.5    2.7e-58  195.8   1.5    1.2  1  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
    2.7e-35  121.2   0.0    3.5e-35  120.8   0.0    1.2  1  THF_DHG_CYH    Tetrahydrofolate dehydrogenase/cyclohydrolase,


Domain annotation for each model (and alignments):
>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.8   1.5     3e-62   2.7e-58       1     158 [.     123     285 ..     123     286 .] 0.98

  Alignments for each domain:
  == domain 1  score: 195.8 bits;  conditional E-value: 3e-62
                    SHHHHHHHHTT--SS--HHHHHHHHHHHHCT---TT-EEEEE---TTTHHHHHHHHHCT..T-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT-B- CS
  THF_DHG_CYH_C   1 hplnlgrlvkgeeallpctpkgvvellketgielegkkvvvvGrsnivgkplallLlek..natVtvchsktkdlaeitreadivvvavGkpelik 94 
                    hp+nlgrlv+g +  lpctp+g+vell+++++ l+g++v+vvGr+n+vg+pl llL+++  natVt+ch+ t dla +tr a+iv+va+G+p+l++
     KIR63086.1 123 HPVNLGRLVLGYDGPLPCTPRGIVELLRRHDVPLRGANVAVVGRGNTVGRPLGLLLTRRseNATVTLCHTGTLDLAGHTRAAEIVIVAAGVPGLLT 218
                    89*******************************************************9777*********************************** PP

                    GGGS-TT-EEEE---EEC....-TTEEE-SB-HHHHCTTSSEE--TTTSCHHHHHHHHHHHHHHHHHC CS
  THF_DHG_CYH_C  95 aemvkegavviDvGinrv....ekgklvGDvdfeevkevasaitPvpgGVGpmTvamllkntleaakr 158
                    a+mv +ga+v+DvGi+rv    +kg+ +GDvd  ev+eva+ + P pgGVGpmT amll+n++e a+r
     KIR63086.1 219 ADMVTPGATVVDVGITRVigadGKGRYTGDVD-PEVAEVAGKVVPMPGGVGPMTRAMLLTNVVERAER 285
                    ********************9999********.99*****************************9986 PP

>> THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.0   3.9e-39   3.5e-35       1     116 []       5     120 ..       5     120 .. 0.99

  Alignments for each domain:
  == domain 1  score: 120.8 bits;  conditional E-value: 3.9e-39
                  E--HHHHHHHHHHHHHHHHHHHHHHT---EEEEEEES--HHHHHHHHHHHHHHHHTT-EEEEEEE-TT--HHHHHHHHHHHHH-TT--EEEE-SS-ST CS
  THF_DHG_CYH   1 lldGkalakeireelkeeveklkekgvkpkLavilvgddpasevYvrnkkkaceevGieseliklpedvseeellklieelneddsvdGilvqlPlpk 98 
                  +ldGka+a+ei++el+++v++l e+gv p+L ++lvg dp s++Yv+ k++ c+evGi s  ++lp+d++++++ +++ eln+d++++G +vqlPlp 
   KIR63086.1   5 ILDGKATAAEIKDELRARVKALAERGVVPGLGTVLVGADPGSQAYVNGKHRDCAEVGIASIRRELPADATQQQVDDVLAELNADPACHGYIVQLPLPG 102
                  79************************************************************************************************ PP

                  TS-HHHHHCCS-GGGBTT CS
  THF_DHG_CYH  99 hidekaileaispeKDVD 116
                  h+d++++le+i+p+KD D
   KIR63086.1 103 HLDTQRALEMIDPDKDAD 120
                  ****************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2087.20
//
Query:       KIR63087.1  [L=316]
Description: malate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-36  124.5   0.3      5e-36  123.9   0.3    1.3  1  Ldh_1_N         lactate/malate dehydrogenase, NAD binding dom
    2.1e-21   76.6   0.1    3.1e-21   76.0   0.1    1.3  1  Ldh_1_C         lactate/malate dehydrogenase, alpha/beta C-te
    0.00013   21.6   2.2     0.0002   21.0   1.1    1.9  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
     0.0063   16.7   0.1      0.016   15.4   0.1    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.027   14.0   0.0    1.6  1  Glyco_hydro_4   Family 4 glycosyl hydrolase
      0.036   14.3   0.0        2.9    8.2   0.1    2.4  2  T2SSE_N         Type II secretion system (T2SS), protein E, N
       0.04   13.5   4.3       0.37   10.3   0.1    3.2  4  DAO             FAD dependent oxidoreductase
       0.08   12.4   0.0       0.14   11.7   0.0    1.4  1  LRR_9           Leucine-rich repeat
        1.9    9.1   4.6        2.9    8.5   0.1    3.0  3  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.9   0.3   2.5e-39     5e-36       2     141 .]       4     149 ..       3     149 .. 0.92

  Alignments for each domain:
  == domain 1  score: 123.9 bits;  conditional E-value: 2.5e-39
                 EEEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS-EEEEE.......SSGGGGTTESEEEE--S-SS-TTTTHHHHHHH CS
     Ldh_1_N   2 kvavvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistflsvkvkvse.......keeealkdadvvvitagvprkpGetRddLlkv 93 
                 kv+vvGa G+ G+++a  la+ ++ d +++ Di++ k  G aldl++  +   +++kv +       + +ea++++dvvvitag prkpG++R dLl++
  KIR63087.1   4 KVTVVGA-GFYGSTTAQRLAEYDVFDTVVITDIVEGKPAGLALDLNQSRAVEGFETKVVGvttgpngEGYEAIEGSDVVVITAGLPRKPGMSRMDLLET 101
                 9******.***************************************99988777665432222345789***************************** PP

                 HHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHHHTS-GGGEEE CS
     Ldh_1_N  94 NakIvkeiveaiakvapnaivlvvsNPvdiltevlkkasglpkkrvig 141
                 NakIv+++ e++ak+apna+v+vvsNP d +t +++ a+++pk+rv+g
  KIR63087.1 102 NAKIVRQVSENVAKYAPNAVVIVVSNPLDEMTALAQLATQFPKNRVLG 149
                 **********************************************87 PP

>> Ldh_1_C  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.1   1.5e-24   3.1e-21       3     162 ..     154     312 ..     152     316 .] 0.90

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 1.5e-24
                 HHHHHHHHHHHHHHTS-GGGEE--EEBSSST..........ETTEEHHHHHTTSTTSTHHHHHHHHHHHHHHHHHHHHHHTTSSSS-HHHHHHHHHHHH CS
     Ldh_1_C   3 LDivRaktflaekagvtprsvkvtViGgHsg..........vtiipllsqvkellklsekqleeliervqnggdevvkakkGagsatlsmAvAgakfve 91 
                 LD++R+  f+ae  gv  rsvk   +G H++          v++ pl         +  +q+eel+ +++ngg+evv   k  gsa+++  +A+a++++
  KIR63087.1 154 LDTARFTNFVAEALGVPVRSVKTLTLGSHGDtmvpvpsqstVDGKPL------REAMPAEQIEELVVKTRNGGAEVVALLK-TGSAYYAPSAAAARMAK 245
                 9******************************8666554444444444......467889*******************876.8**************** PP

                 HHHTTHTEEEEEEEEEESCCCECCSSEEEEEEEEEEETTEEEEE-------HHHHHHHHHHHHHHHHHHHH CS
     Ldh_1_C  92 allrdtkeilsagvyldgevglkdqeieyfsvPvvlgknGvekvleilklndfeeekleksvkeLkkeiek 162
                 a+ +d +e++++ +  dge+g++    +y++v + +g++Gv++v+e   l++ e   l+++++  +++  +
  KIR63087.1 246 AVAEDSGEVMPVCAWVDGEYGISG---VYLGVEAQIGAEGVKRVVE-TDLDADELASLKEAAEAVRAKQAD 312
                 ************************...9******************.99***********99998877655 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   1.1     1e-07    0.0002       2     119 ..       4     125 ..       3     146 .. 0.72
   2 ?   -2.8   0.0         2     4e+03      20      41 ..     280     301 ..     271     309 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1e-07
                     EEEEE--STTHHHHHHHHHHCT..SEEEEE-S-HHHHHHHC..TTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-----B-TTT CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeig..hevigvDideekvdkln..sgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaVgTPskkkg 92 
                     k++v+G+G+ G +ta  lae     +v++ Di e k + l    +++  +e   e+ v  ++       + +  +a+e +dv++i+ g P k   
      KIR63087.1   4 KVTVVGAGFYGSTTAQRLAEYDvfDTVVITDIVEGKPAGLAldLNQSRAVEG-FETKVVGVT----TGPNGEGYEAIEGSDVVVITAGLPRKPGM 93 
                     89******************9876799*********9977611456666664.444444444....3556666788999*************966 PP

                     TCB-T.....HHHHHHHHHHHHHHHCEEEEEE CS
  UDPG_MGDP_dh_N  93 kaaDl.....kyvesaarsiaealkkgkvvvv 119
                     + +Dl     k v ++++++a+++ +  v+vv
      KIR63087.1  94 SRMDLletnaKIVRQVSENVAKYAPNAVVIVV 125
                     66665322225555555556655555555554 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2
                     HHCTSEEEEE-S-HHHHHHHCT CS
  UDPG_MGDP_dh_N  20 aeighevigvDideekvdklns 41 
                     ae  + v+  D d+   ++l++
      KIR63087.1 280 AEGVKRVVETDLDADELASLKE 301
                     4445778888888887777775 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   8.1e-06     0.016       1      24 [.       7      32 ..       7      45 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.1e-06
                   EE--SHHHHHHHHHHHCCTE..EEEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagf..dvll 24
                   +vGaG+ G+++A++La++++   v++
     KIR63087.1  7 VVGAGFYGSTTAQRLAEYDVfdTVVI 32
                   8****************965433444 PP

>> Glyco_hydro_4  Family 4 glycosyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.3e-05     0.027     122     165 ..     104     149 ..      98     166 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-05
                    HHHHHHHHHHHHH-TTSEEEE-SSSHHHHHHH..HHHHSTTSEEEE CS
  Glyco_hydro_4 122 pvlleIakdieelcPdawvlnytNPaavvtea..llrlvpnikavg 165
                    +++ ++ +++ +++P+a v+  +NP+ ++t +  l  ++p+ +++g
     KIR63087.1 104 KIVRQVSENVAKYAPNAVVIVVSNPLDEMTALaqLATQFPKNRVLG 149
                    67889999******************99998622344566666665 PP

>> T2SSE_N  Type II secretion system (T2SS), protein E, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0015       2.9      57      85 ..     118     147 ..     113     149 .. 0.91
   2 ?    3.5   0.0     0.042        84       3      28 ..     150     175 ..     148     192 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0015
     T2SSE_N  57 dgkllvavvdPld.laaldelqrllgkkgv 85 
                 +++++++v++Pld + al +l+ +++k +v
  KIR63087.1 118 PNAVVIVVSNPLDeMTALAQLATQFPKNRV 147
                 6899*********************99776 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.042
     T2SSE_N   3 eegllseeqlleaLaeqlglpfldld 28 
                 ++g+l+ + + + +ae lg+p+ + +
  KIR63087.1 150 QAGMLDTARFTNFVAEALGVPVRSVK 175
                 78*******************95544 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00019      0.37       2      25 ..       5      32 ..       4      42 .. 0.83
   2 ?    2.4   0.2     0.046        92     166     202 ..      50      87 ..      34     131 .. 0.69
   3 ?   -0.1   0.0      0.27   5.4e+02     130     155 ..     141     166 ..      99     172 .. 0.71
   4 ?   -1.4   0.0      0.68   1.4e+03     117     164 ..     205     255 ..     157     289 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00019
                EEEECTSHHHHHHHHHHHHTT....EEE CS
         DAO  2 vviiGGGiiGlstAyeLarrg....Vtl 25
                v ++G+G  G++tA  La+      V++
  KIR63087.1  5 VTVVGAGFYGSTTAQRLAEYDvfdtVVI 32
                89***************99876775433 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.046
                 SECEEEEEEEETCEEEEEEECT.EEE.E....EEEEEEE--GG CS
         DAO 166 gtevtgleeedgkvwgverttp.gen.d....aadavVnaaGa 202
                  + v+g+e    kv+gv +t p ge  +    + d vV++aG+
  KIR63087.1  50 SRAVEGFET---KVVGV-TTGPnGEGyEaiegS-DVVVITAGL 87 
                 467888865...59999.444445443344434.66*****97 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.27
                 TTSEEEEETTEEEEEHHHHHHHHHHH CS
         DAO 130 gllgalfypdtgqvdpakltaalara 155
                 ++ +  +  ++g +d+a++t+++a+a
  KIR63087.1 141 QFPKNRVLGQAGMLDTARFTNFVAEA 166
                 45555667789999999999999887 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.68
                 EHHHHHHHSTTST..TTS.EEEEETTEEEEEHHHHHHHHHHHHHHTT-EEE CS
         DAO 117 daeevrelepalp..gll.galfypdtgqvdpakltaalaraaealGveil 164
                  ae+++el   ++  g    al+ ++++   p +++a +a+a+++  +e+ 
  KIR63087.1 205 PAEQIEELVVKTRngGAEvVALLKTGSAYYAPSAAAARMAKAVAEDSGEVM 255
                 444444444321123111133555555666777777777777666655555 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.9e-05      0.14      57     110 ..      87     139 ..      53     164 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.9e-05
       LRR_9  57 ldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPla 110
                 l   P + r+  l  n   +++++e+++++ Pn   +v+ +n l+e++ l  la
  KIR63087.1  87 LPRKPGMSRMDLLETNAKIVRQVSENVAKYAPNAVVIVV-SNPLDEMTALAQLA 139
                 4556889********999999************876665.56677777776665 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0015       2.9       1      68 [.       4      84 ..       4      96 .. 0.78
   2 ?    1.3   0.1      0.26   5.2e+02      48      80 ..     107     138 ..      89     148 .. 0.61
   3 ?   -2.2   0.1       3.3   6.5e+03      27      49 ..     285     307 ..     276     315 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0015
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC............-EEECECH...HHHHHH-SEEEE- CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg............vkvtavdn...eeaaeeadvvvla 68
                   k+ ++GaG  g++ a++l++ +    + vv+++  + k + la +l+            v+vt+++n    ea+e +dvvv++
     KIR63087.1  4 KVTVVGAGFYGSTTAQRLAEYD--VFDTVVITDIVEGKPAGLALDLNqsravegfetkvVGVTTGPNgegYEAIEGSDVVVIT 84
                   6899******************..44444455777777777777777777899999999888887773235799999999987 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.26
                    -EEECECHHHHHHH-SEEEE-S-HHHHHHHHHH CS
  F420_oxidored  48 vkvtavdneeaaeeadvvvlavkpedveevlse 80 
                    ++v++ + ++ a +a v+v++ +   ++++++ 
     KIR63087.1 107 RQVSE-NVAKYAPNAVVIVVSNPLDEMTALAQL 138
                    34444.555566667777777777766666544 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.3
                    CEEEEEESSCCCHHHHHHHHC.-E CS
  F420_oxidored  27 eivvansrnpekaeelaeelg.vk 49 
                     +v  ++ + +++++l+e+++ v+
     KIR63087.1 285 RVV-ETDLDADELASLKEAAEaVR 307
                    455.33666777777777765222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 2419.58
//
Query:       KIR63088.1  [L=265]
Description: beta-lactamase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-22   80.7   5.0    2.1e-22   80.1   5.0    1.3  1  Lactamase_B    Metallo-beta-lactamase superfamily
    0.00052   19.6   0.3    0.00083   18.9   0.3    1.4  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   5.0   2.3e-26   2.1e-22       8     183 ..      61     242 ..      55     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 2.3e-26
                  EEEEE.ETTCEEEES--SCHHHHHHHH..........HHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHC CS
  Lactamase_B   8 sylie.gdggviLiDtGtsteaaraal..........elaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrk 94 
                  ++ ++ gdg v L+D+G++++ a aa+          elaa+g++p dv++v+lTHlH+DH+G++   +  + ++ + v+ ++   +     + +   
   KIR63088.1  61 CFALRaGDGPVTLVDAGIGPAGAPAASwapvpgrlpaELAAAGIDPADVRTVVLTHLHTDHVGWAVVGTPWFRNADYLVQRAELTALASLNPGLEAGL 158
                  77788899*********************************************************999999999999999888888888886666665 PP

                  CHHTTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHH CS
  Lactamase_B  95 glllagvsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridltlrgaevrdpsdaekyldsll 183
                       ++ + + +   +++d+ + +++++  t+g+++gh ++ v++g++++l+tGD+l  + ++ ++  l  a+   p+ a+ ++ +ll
   KIR63088.1 159 V----APLRAAGQLRVLDGDTPLTPGVRVLSTPGHTPGHQSVLVDSGDERLLVTGDLLVHAVQLVDPD-LAYAHEEQPGTARASRVALL 242
                  4....69999************************************************9777777777.55555555555555554443 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.3   9.3e-08   0.00083      17     142 ..      96     210 ..      72     225 .. 0.54

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 9.3e-08
                    CGGS--S.SS--..SEEEEE-SS--HHHHGGGGCCCC..C--EEEEEEEEHHHHHHCCTTCGHHHCHTT....TTEEEEEE-TTSEEEECSTTEEE CS
  Lactamase_B_2  17 ralqPve.lrdelppidaVllthaHyDHlaglltlre..lrpkklplyapkgvlavleanfvylaleee....pavnvheldwgesfelgdgglei 105
                    +a    + +  +++++  V+lth H DH+ g   + +  +  ++++ ++++  l  l++  + l  +      +a +++ ld ++++++g   +++
     KIR63088.1  96 PAE--LAaAGIDPADVRTVVLTHLHTDHV-GWAVVGTpwF--RNADYLVQRAELTALASLNPGLEAGLVaplrAAGQLRVLDGDTPLTPG---VRV 183
                    222..233677889999************.6666666333..333333443333333333333333333233345577777777777776...445 PP

                    EEEEE-EE--CTCCE-TTTSEEEEEECTTEEEEEESS CS
  Lactamase_B_2 106 tatparhksgrrldrnagdtlGlriegggkrvyyigD 142
                      tp +  + +          ++++++g++r++ +gD
     KIR63088.1 184 LSTPGHTPGHQ----------SVLVDSGDERLLVTGD 210
                    55544433333..........5566655566555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1823.85
//
Query:       KIR63089.1  [L=405]
Description: isocitrate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-68  231.9   0.0    1.3e-68  231.7   0.0    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase
  ------ inclusion threshold ------
      0.018   15.8   0.1       0.51   11.1   0.0    2.3  2  Phe_ZIP   Phenylalanine zipper


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.7   0.0   1.5e-72   1.3e-68       2     347 ..       6     394 ..       5     395 .. 0.92

  Alignments for each domain:
  == domain 1  score: 231.7 bits;  conditional E-value: 1.5e-72
                 EEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHSSSS-HHHHHHHHHSSEEEEEE---CSSSSSSHHH.HHHHHHHHTT.EEEEE CS
      Iso_dh   2 iallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetgeplpeetleaikeadvvllgavgtpkekevrpen.gLlaLrkeld.lfanl 98 
                 + ++ ++ +G+e+++ ++k +++    ++l+++++++d++ +++d t+++++ ++++aike  v +++a++tp+  e+r+e+ gL++++++++ +++n+
  KIR63089.1   6 VNNPVVELDGDEMTRIIWKQIREQLILPYLDVDLHYYDLSIQYRDSTDDQVTIDAANAIKEHGVGVKCATITPD--EARVEEfGLKKMWRSPNgTIRNI 102
                 7788899*******************************************************************..9***************99***** PP

                 EEEE-BCCTTCCSSBTHHHHCT.-EEEEEEE-SSCGGCSSEEEEET......................TG.GGGEEEEEEEEEHHH.HHHHHHHHHHHH CS
      Iso_dh  99 rpvkvfeklkvksplkrevvee.vdlvivReltggiYfgeekekkg......................sifteevavdtklyseee.ieriaraafelA 173
                 + + vf +    s + r v+++ + ++i R++ g++Y +++ +  g                      +      +v++ +y+ ++ i+ +ara++ + 
  KIR63089.1 103 LGGVVFREPIIMSNVPRLVPGWtKPIIIGRHAHGDQYKATDFVVPGpgtvtitytpadgsapvemevaN--FPGGGVTMGMYNFDDsIRDFARASMRYG 199
                 ******555555555558****899*******************99*****************997542..345799******998899********** PP

                 HHTTTSEEEEEESTTTTHHHH.HHHHHHHHHHCC......TTTTSEEEEEEHHHHHHHHHHSGGGGS.EEEE-HHHHHHHHHHHHHHTTSGCC-EEEEE CS
      Iso_dh 174 lkrgkkkvtlvdKanvlksse.lwrkiveevaee......eypdielehqlvDsaamqlvkspkqfd.VivtkNlfGDilSDeaaalvGslGllpSasl 264
                 l+r   +v+l++K+++lk+++ ++++i++ev+e+      e+++i++eh+l+D++++ ++k +   + V+++kN++GD++SD +a+ +GslGl++S+ +
  KIR63089.1 200 LDR-GYPVYLSTKNTILKAYDgRFKDIFAEVFENefkaefEAAGITYEHRLIDDMVAAALKWE--GGfVWACKNYDGDVQSDTVAQGFGSLGLMTSVLM 295
                 ***.99****************************9****************************..445******************************* PP

                 ET.SS-EEEEESS---CCCTTSS-......S-THHHHHHHHHHHHHTTT-HHHH......HHHHHHHHHHHHHTSCCHHHCTTS...TCCCHHHHHHHH CS
      Iso_dh 265 ge.kkvaifEavHGsapdiagkdk......aNpiavilSaalmLryslgleeaA......dkiekAvekvleagivTkDlagea...akevstsefgda 347
                  + ++++ +Ea+HG+++++ ++ +      +Npia+i ++++ L+++ +l+ +       + +e+ + +++e g +TkDla      a  ++t+ef++a
  KIR63089.1 296 TPdGRTVEAEAAHGTVTRHYRQYQkgektsTNPIASIYAWTRGLAHRGKLDGTPavtefaNTLEQVIIDTVEGGQMTKDLALLIsrdAPWLTTDEFMNA 394
                 **8899**************9988899999****************87775432344444*********************987666677888888776 PP

>> Phe_ZIP  Phenylalanine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.7e-05      0.51      15      57 .]     189     235 ..     187     235 .. 0.72
   2 ?    2.0   0.0     0.039   3.5e+02       9      35 ..     303     329 ..     302     332 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.7e-05
     Phe_ZIP  15 adfArayrrfl..aenpqsa..eplaaedFskkFvelFlehFeaevk 57 
                 +dfAra +r+   +  p +   +++  +++  +F ++F e+Fe+e+k
  KIR63089.1 189 RDFARASMRYGldRGYPVYLstKNTILKAYDGRFKDIFAEVFENEFK 235
                 6899999999865555555422333345599**************96 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.039
     Phe_ZIP   9 hAraaAadfArayrrflaenpqsaepl 35 
                 +A+aa     r+yr++ + +++s++p+
  KIR63089.1 303 EAEAAHGTVTRHYRQYQKGEKTSTNPI 329
                 6888888899******97666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3212.04
//
Query:       KIR63090.1  [L=361]
Description: galactose-1-phosphate uridylyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-37  127.9   0.0    9.5e-37  127.2   0.0    1.3  1  GalP_UDP_transf  Galactose-1-phosphate uridyl transferase, N-
    3.9e-16   59.2   0.0    7.5e-16   58.3   0.0    1.4  1  GalP_UDP_tr_C    Galactose-1-phosphate uridyl transferase, C-


Domain annotation for each model (and alignments):
>> GalP_UDP_transf  Galactose-1-phosphate uridyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.0   1.1e-40   9.5e-37      11     183 ..      39     195 ..      19     196 .. 0.94

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 1.1e-40
  GalP_UDP_transf  11 ashrrfnpltgewvlvsphrtkrpwqgqqekiskdtlpekDklkcyLcPgn.srangefnpkykstfvftndFpalsedsnyikteaiaknilf 103
                      as++r++plt+ewv+v+ hr+ r             lp+ D+  c+LcP    r+++  +p+ +++ vf+n+Fp+ls++  ++ +   +  +  
       KIR63090.1  39 ASQLRYDPLTDEWVAVAVHRQSRIF-----------LPPADQ--CPLCPSRgDRLSEIPAPD-YDVAVFENRFPSLSQRIAEEPA---EITPFT 115
                      5899*******************99...........89***5..*****762678*******.89***************99999...557999 PP

  GalP_UDP_transf 104 kaepayGrceviifsskheltladlspkdikavvaaWqektaelkakeypkcvlifENkGaamgvsnphPHgqiwaeehl 183
                      +++p +Grcev++f  +h  ++a l+p+++++v++a +++ta+l++  +++++++fEN+G ++gv++ hPHgqi+a++++
       KIR63090.1 116 PVRPGQGRCEVVCFTDDHHASFAGLPPARVRTVLDALADRTAALAELPGVEQIFCFENRGVEIGVTLHHPHGQIYAYPFV 195
                      *****************************************************************************987 PP

>> GalP_UDP_tr_C  Galactose-1-phosphate uridyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   8.3e-20   7.5e-16      14     155 ..     215     356 ..     203     359 .. 0.88

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 8.3e-20
                    SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---EEEEEE---SCCCT CS
  GalP_UDP_tr_C  14 gsillhdyvqmelaekervvelkdsflavvpylakWPfevlllrkaevkslaeladeekedlaailkklarkydnlfetsfeysmGlhqaplnaee 109
                    g +l +d +  e+a+  rvv  ++++ a vp  a WPfev + +++ v+ +  l+d+e++       +l+r++d lf+  ++y   +hqap+  + 
     KIR63090.1 215 GGNLYADVLAAERAAGTRVVAANEHWTAYVPAAARWPFEVHVAPHRPVPDIPALTDAERDAFGPLYLDLLRRFDALFDMPMPYIAAWHQAPVRIDR 310
                    7789999999*********************************************************************************98764 PP

                    TTT--EEEEE--BCSSTTEB----.THHH.HT-EEESS-HHHHHHHHH CS
  GalP_UDP_tr_C 110 dnswlHaHfevpllrsatvrkieV.Glel.LperlrdllaEqaaerlr 155
                      +  H H++   +r+at ++    G e  ++    d+ +E aa++lr
     KIR63090.1 311 --ELGHLHLQLFSIRRATDKLKYLaGSESgMGVFINDIAPERAAALLR 356
                    ..568999*******999775544477753667777888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2534.81
//
Query:       KIR63091.1  [L=289]
Description: cytochrome C [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-49  168.3   0.1    1.6e-49  167.9   0.1    1.2  1  DeoRC           DeoR C terminal sensor domain
    7.1e-20   70.5   0.4    1.4e-19   69.6   0.4    1.4  1  HTH_DeoR        DeoR-like helix-turn-helix domain
    9.3e-09   35.1   0.0    2.1e-08   34.0   0.0    1.5  1  HTH_11          HTH domain
    2.3e-06   27.1   0.3    5.9e-06   25.9   0.3    1.7  1  GntR            Bacterial regulatory proteins, gntR family
    0.00067   19.5   0.0     0.0015   18.4   0.0    1.6  1  MarR            MarR family
    0.00079   19.2   0.4    0.00079   19.2   0.4    2.0  2  HTH_IclR        IclR helix-turn-helix domain
    0.00095   19.0   2.4     0.0026   17.6   0.2    2.6  2  MarR_2          MarR family
     0.0026   17.5   1.8     0.0032   17.2   0.2    2.0  2  HTH_23          Homeodomain-like domain
     0.0058   16.1   1.7       0.35   10.4   0.3    2.9  2  Sigma70_r4      Sigma-70, region 4
     0.0062   16.6   5.5      0.036   14.1   0.3    3.3  3  HTH_20          Helix-turn-helix domain
     0.0077   16.1   0.0      0.017   14.9   0.0    1.6  1  HTH_5           Bacterial regulatory protein, arsR family
     0.0079   15.7   0.1      0.079   12.5   0.0    2.2  2  HTH_24          Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.014   15.8   0.1      0.037   14.4   0.0    1.8  2  FaeA            FaeA-like protein
      0.021   14.9   0.1      0.021   14.9   0.1    2.0  2  HTH_28          Helix-turn-helix domain
      0.037   14.7   0.0       0.12   13.1   0.0    1.8  2  RPA_C           Replication protein A C terminal
      0.049   13.5   0.1      0.094   12.6   0.1    1.4  1  Sigma70_ECF     ECF sigma factor
      0.066   13.6   0.1       0.24   11.7   0.0    1.9  2  Rrf2            Transcriptional regulator
      0.076   13.0   0.0       0.16   12.0   0.0    1.5  1  Put_DNA-bind_N  Putative DNA-binding protein N-terminus


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.9   0.1   1.6e-52   1.6e-49       4     159 ..      78     234 ..      75     235 .. 0.97

  Alignments for each domain:
  == domain 1  score: 167.9 bits;  conditional E-value: 1.6e-52
       DeoRC   4 eeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLseke..dikvillGGevrkkseslvgplaeealrqfnvdkaflga 100
                  eK++IA++Aael+++g++++l aGtTt+elar+L + + ltvvTnsl+vae L++ +  d +v+l+GG vr+ s++lvgpla  a+r++++d++flg+
  KIR63091.1  78 PEKAAIAARAAELVRPGAAVALSAGTTTAELARRLVDVPGLTVVTNSLPVAEILHAGDrtDQTVVLTGG-VRTPSDALVGPLAVAAIRSLHLDLLFLGV 175
                 69****************************************************987765889999999.***************************** PP

       DeoRC 101 ngidaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitD 159
                 +gi++++g+tt++++eae+ ral++aa+r ++laD++K+g ++ ++i++l++ d+l+tD
  KIR63091.1 176 HGISERAGFTTPNLMEAETDRALVAAADRLVVLADHTKWGTVGISSIVELSAADVLVTD 234
                 **********************************************************9 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.4   1.4e-22   1.4e-19       1      52 [.       6      57 ..       6      60 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 1.4e-22
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGav 52
                R+++ile ++  g ++v+el++++gvS++TiRRDL++L+eqg+l ++hGGa+
  KIR63091.1  6 RQAAILERVRATGGVRVTELAAEFGVSDMTIRRDLDTLHEQGVLAKVHGGAT 57
                9*************************************************97 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   2.1e-11   2.1e-08       1      44 [.       6      50 ..       6      56 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 2.1e-11
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelg..v 44
                R+ +ile++ +a+g +   eLA e++vS +t+rrd+++L e+g  +
  KIR63091.1  6 RQAAILERV-RATGGVRVTELAAEFGVSDMTIRRDLDTLHEQGvlA 50
                8999*****.66666***************************9554 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.3   5.9e-09   5.9e-06      26      62 ..      21      57 ..       6      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 5.9e-09
                -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEE CS
        GntR 26 sereLaaefgVsrttvReALrrLeaeglverrqgrGt 62
                ++ eLaaefgVs +t+R+ L++L ++g++   +g++t
  KIR63091.1 21 RVTELAAEFGVSDMTIRRDLDTLHEQGVLAKVHGGAT 57
                789***************************9999988 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.5e-06    0.0015       4      49 ..       6      51 ..       4      54 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.5e-06
                HHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        MarR  4 tqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieR 49
                 q  iL+ ++  g+ +v+eLa  +gvs +t+ r ld+L ++G + +
  KIR63091.1  6 RQAAILERVRATGGVRVTELAAEFGVSDMTIRRDLDTLHEQGVLAK 51
                6999************************************998765 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.4     8e-07   0.00079       4      50 ..       6      51 ..       3      53 .. 0.88
   2 ?   -3.0   0.1       6.9   6.8e+03      20      28 ..     104     112 ..      98     112 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 8e-07
                HHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR  4 RalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                R +aiL+ ++++++ ++++elA+++g++  t +R L tL+e+G + +
  KIR63091.1  6 RQAAILERVRATGG-VRVTELAAEFGVSDMTIRRDLDTLHEQGVLAK 51
                56778888877777.8***************************9975 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.9
                 BHHHHHHHH CS
    HTH_IclR  20 tlselArrt 28 
                 t +elArr+
  KIR63091.1 104 TTAELARRL 112
                 568999985 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   2.6e-06    0.0026       7      54 ..       7      52 ..       5      64 .. 0.91
   2 ?   -0.2   0.2      0.94   9.4e+02      14      31 ..      97     112 ..      81     113 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.6e-06
                HHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2  7 qarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54
                qa +L  +++ +g  ++v+ela+++g+s  ++ r l+ L ++G + ++
  KIR63091.1  7 QAAILERVRATGG--VRVTELAAEFGVSDMTIRRDLDTLHEQGVLAKV 52
                8999*********..****************************98766 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.94
                 HHCTTTSEEEHHHHHHHH CS
      MarR_2  14 Lgrrpgrdltvgelarrl 31 
                 ++ + g   t +elarrl
  KIR63091.1  97 VALSAG--TTTAELARRL 112
                 444555..6999999998 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   3.2e-06    0.0032       5      36 ..       4      38 ..       1      47 [. 0.85
   2 ?   -2.1   0.1       3.7   3.7e+03      12      27 ..      98     112 ..      79     115 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.2e-06
      HTH_23  5 reRlrillllae...GlsvreIAreLgvsrrTvyr 36
                r+R+ ++l   +   G +v+e A+e+gvs +T++r
  KIR63091.1  4 RQRQAAILERVRatgGVRVTELAAEFGVSDMTIRR 38
                6677766666666********************98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.7
      HTH_23  12 lllaeGlsvreIAreL 27 
                  l   G +++e Ar+L
  KIR63091.1  98 ALS-AGTTTAELARRL 112
                 222.377777777776 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.3   0.00035      0.35       7      39 ..       5      38 ..       4      40 .. 0.91
   2 ?    3.7   0.0     0.044        44       3      19 ..     235     251 ..     235     257 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00035
                HHHHHHHHHHH.TTT--HHHHHHHHTS-HHHHHH CS
  Sigma70_r4  7 ererevlelrf.geglTleEIgerlgiSrerVrq 39
                +r+  +le ++   g    E+++++g+S +++r+
  KIR63091.1  5 QRQAAILERVRaTGGVRVTELAAEFGVSDMTIRR 38
                689999999999999999***************7 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.044
                 HHS-HHHHHHHHHHHTT CS
  Sigma70_r4   3 asLpererevlelrfge 19 
                 ++L+++ r+vl  r ge
  KIR63091.1 235 DRLDPQARQVLDERVGE 251
                 68*********999765 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.3   3.6e-05     0.036      12      57 ..       7      52 ..       2      55 .. 0.91
   2 ?    3.1   0.1       0.1     1e+02      22      37 ..     100     116 ..      90     141 .. 0.84
   3 ?   -0.6   0.1       1.4   1.4e+03      20      48 ..     179     208 ..     166     211 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.6e-05
                HHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 12 RrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevv 57
                +++il   +  +g+ ++ela+++++s+ t+++ L++L e g +  v
  KIR63091.1  7 QAAILERVRATGGVRVTELAAEFGVSDMTIRRDLDTLHEQGVLAKV 52
                68899999999******************************99766 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.1
                 CTTB-HHHHHHHH.TS- CS
      HTH_20  22 aegltaselaerl.dls 37 
                  +g t +ela+rl d++
  KIR63091.1 100 SAGTTTAELARRLvDVP 116
                 7899********97543 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.4
                 STCTTB-HHHHHHHH.TS-HHHHHHHHHHH CS
      HTH_20  20 araegltaselaerl.dlskntlsyHLrvL 48 
                 ++++g+t + l+e+  d +   + ++L vL
  KIR63091.1 179 SERAGFTTPNLMEAEtDRALVAAADRLVVL 208
                 678999999999987555555555555555 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.8e-05     0.017      17      46 ..      21      50 ..       8      51 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.8e-05
                EHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5 17 cvcelaeelglsqstvShHLkkLreaGLVe 46
                 v+ela+e+g+s  t+++ L  L+e+G++ 
  KIR63091.1 21 RVTELAAEFGVSDMTIRRDLDTLHEQGVLA 50
                599************************975 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     8e-05     0.079       7      46 ..       9      48 ..       5      50 .. 0.94
   2 ?    0.4   0.0      0.49   4.9e+02      16      27 ..     101     112 ..      97     112 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8e-05
      HTH_24  7 kILelLqknprisqreLAerlglSpstvnrrlkrLeeeGl 46
                +ILe +++ ++   +eLA + g+S  t++r l+ L e+G+
  KIR63091.1  9 AILERVRATGGVRVTELAAEFGVSDMTIRRDLDTLHEQGV 48
                69****************************9999999998 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.49
      HTH_24  16 prisqreLAerl 27 
                 ++++ +eLA+rl
  KIR63091.1 101 AGTTTAELARRL 112
                 68999****997 PP

>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.8e-05     0.037       5      48 ..      10      52 ..       6      59 .. 0.87
   2 ?   -2.9   0.0       9.1     9e+03      13      23 ..     100     110 ..      97     112 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.8e-05
                HHHHHHH.S----HHHHHHHHTS-HHHHHHHHHHHHHHSSEEEE CS
        FaeA  5 IleylnsikapckTreiAdalglsaYQaRyYLeqLekegkikrs 48
                Ile +    ++++ +e+A  +g+s+  +R  L +L+ +g + ++
  KIR63091.1 10 ILERVRA-TGGVRVTELAAEFGVSDMTIRRDLDTLHEQGVLAKV 52
                6666666.899*****************************9997 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 9.1
                 S----HHHHHH CS
        FaeA  13 kapckTreiAd 23 
                  a+ +T+e+A 
  KIR63091.1 100 SAGTTTAELAR 110
                 68999999996 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   2.1e-05     0.021       2      41 ..       6      48 ..       5      56 .. 0.74
   2 ?   -2.2   0.3       4.9   4.9e+03       9      21 ..      99     111 ..      80     112 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.1e-05
      HTH_28  2 Rleiikllaa...GhsvreaArelgisrrtvyrWikryeegGi 41
                R  +i++  +   G++v+e+A+e+g+s  t++r +  + e+G+
  KIR63091.1  6 RQAAILERVRatgGVRVTELAAEFGVSDMTIRRDLDTLHEQGV 48
                666665544336566****************997777777776 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.9
      HTH_28   9 laaGhsvreaAre 21 
                 l aG + +e+Ar+
  KIR63091.1  99 LSAGTTTAELARR 111
                 3357777777776 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00012      0.12      61      97 ..      13      49 ..       4      51 .. 0.90
   2 ?   -2.4   0.0       7.6   7.6e+03      66      84 ..     101     120 ..      68     125 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00012
                .SXSTTTEEHHHHHHHSTSXHHHHHHHHHHHHHTTSE CS
       RPA_C 61 speseeGvhvdeiaqklrlsvndvkqavdeLsneGii 97
                 ++ + Gv v e+a+++++s  ++++ +d+L ++G++
  KIR63091.1 13 RVRATGGVRVTELAAEFGVSDMTIRRDLDTLHEQGVL 49
                578899*****************************85 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 7.6
                 TTEEHHHHHHHS.TSXHHHH CS
       RPA_C  66 eGvhvdeiaqkl.rlsvndv 84 
                 +G    e+a++l  ++  +v
  KIR63091.1 101 AGTTTAELARRLvDVPGLTV 120
                 56667777877755555444 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   9.4e-05     0.094     146     173 ..      14      41 ..       3      47 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.4e-05
  Sigma70_ECF 146 lrkleGlsveEiAeklgvskrtverrla 173
                  +r   G  v+E+A+++gvs  t++r+l 
   KIR63091.1  14 VRATGGVRVTELAAEFGVSDMTIRRDLD 41 
                  678899*******************997 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00025      0.24      21      60 ..      15      54 ..       7      58 .. 0.86
   2 ?   -2.0   0.0       4.9   4.9e+03      10      33 ..     201     224 ..     194     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
                STCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
        Rrf2 21 eeeepvsseeiaerqnispsylekilakLrkaglvksvrG 60
                +  + v+++e+a+++++s+  +++ l +L ++g++  v G
  KIR63091.1 15 RATGGVRVTELAAEFGVSDMTIRRDLDTLHEQGVLAKVHG 54
                4444599***************************999888 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.9
                 HHHHHHHHHHSSTCC-B-HHHHHH CS
        Rrf2  10 alhallyLakeeeeepvsseeiae 33 
                 a   l++La + + ++v +++i e
  KIR63091.1 201 AADRLVVLADHTKWGTVGISSIVE 224
                 666789999999988888888765 PP

>> Put_DNA-bind_N  Putative DNA-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00016      0.16      30      48 ..      22      40 ..       9      41 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00016
                    HHHHHHHCTS-HHHHHHHH CS
  Put_DNA-bind_N 30 SteLaealgvtaaqvRKDL 48
                     teLa++ gv++ ++R+DL
      KIR63091.1 22 VTELAAEFGVSDMTIRRDL 40
                    48****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2041.41
//
Query:       KIR63092.1  [L=509]
Description: adenylylsulfate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-55  185.2   0.0    1.6e-54  184.1   0.0    1.6  2  APS_kinase       Adenylylsulphate kinase
    9.5e-18   64.4   0.0    1.6e-17   63.6   0.0    1.3  1  PUA_2            PUA-like domain
    3.6e-16   59.3   0.0    8.4e-13   48.3   0.0    2.3  1  ATP-sulfurylase  ATP-sulfurylase
    1.3e-08   35.1   0.0    3.3e-08   33.8   0.0    1.7  1  AAA_33           AAA domain
    3.3e-05   23.5   0.0    4.8e-05   22.9   0.0    1.2  1  KTI12            Chromatin associated protein KTI12
    0.00025   21.1   0.0    0.00042   20.4   0.0    1.4  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
    0.00043   19.3   0.0    0.00084   18.4   0.0    1.4  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
    0.00071   18.9   0.1     0.0018   17.6   0.0    1.6  2  Zeta_toxin       Zeta toxin
    0.00074   19.9   0.1     0.0018   18.7   0.1    1.6  1  AAA_16           AAA ATPase domain
     0.0021   17.9   1.8       0.15   11.9   0.1    2.5  2  CPT              Chloramphenicol phosphotransferase-like prot
     0.0055   16.4   1.1       0.03   14.1   1.1    2.1  1  AAA_30           AAA domain
     0.0066   16.2   0.0      0.017   14.9   0.0    1.6  1  AAA_29           P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.015   15.9   0.0      0.026   15.1   0.0    1.4  1  AAA_18           AAA domain
      0.018   14.8   0.0       0.05   13.4   0.0    1.7  2  CLP1_P           mRNA cleavage and polyadenylation factor CLP
      0.035   14.0   0.1      0.065   13.2   0.1    1.4  1  NACHT            NACHT domain
       0.04   13.9   0.0      0.085   12.9   0.0    1.5  1  AAA_5            AAA domain (dynein-related subfamily)
      0.047   13.4   0.6        2.2    8.0   0.0    2.2  2  Cytidylate_kin   Cytidylate kinase
      0.051   13.0   0.0      0.082   12.3   0.0    1.3  1  ParA             NUBPL iron-transfer P-loop NTPase
      0.072   13.5   0.0       0.52   10.7   0.0    2.1  2  AAA_17           AAA domain
      0.074   13.6   0.0       0.13   12.7   0.0    1.4  1  ABC_tran         ABC transporter
      0.075   13.3   0.0       0.15   12.4   0.0    1.4  1  AAA_22           AAA domain
       0.12   11.2   0.0        0.2   10.5   0.0    1.2  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
       0.13   12.2   0.1       0.23   11.4   0.1    1.3  1  NTPase_1         NTPase
       0.19   11.4   0.1       0.35   10.5   0.1    1.4  1  SRP54            SRP54-type protein, GTPase domain
       0.21   11.2   0.1       0.38   10.4   0.1    1.3  1  CoaE             Dephospho-CoA kinase
       0.21   10.7   0.0       0.32   10.1   0.0    1.1  1  PIF1             PIF1-like helicase


Domain annotation for each model (and alignments):
>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       7.5   5.1e+03      34      59 ..     249     274 ..     243     277 .. 0.82
   2 !  184.1   0.0   2.3e-57   1.6e-54       1     155 [.     326     482 ..     326     485 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.5
                 EEEEHHHHTTTTTTT--SSHHHHHHH CS
  APS_kinase  34 ylLdGdnvRhgLnkdLgfseedRken 59 
                 ++L G  +R  + ++L++++ d +  
  KIR63092.1 249 EMLSGAGLRVLVPRELAYDNRDGQWR 274
                 68999999999999999999887655 PP

  == domain 2  score: 184.1 bits;  conditional E-value: 2.3e-57
                 S-EEEEEESSTTSSHHHHHHHHHHHHHHTT.--EEEEEHHHHTTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTT-EEEEE----SHHHHHHHHHHHHC CS
  APS_kinase   1 rgvvvwltGlsgsGKstianalekkLvekg.isvylLdGdnvRhgLnkdLgfseedRkenirrvaevaklladaglivlvafisPyreeReaarellee 98 
                 rg+vv+ltG+sgsGKstia+ l+  L+e g ++v+lLdGd+vR++L+ +L+fs++dR+ n+rr++ va ++a++  + ++  i+Py+++R++are+ + 
  KIR63092.1 326 RGLVVFLTGFSGSGKSTIARGLADVLREGGdRTVTLLDGDVVRRELSAGLTFSKADRDLNVRRIGWVAAEIARHRGVGICCPIAPYAAARTTAREMAHA 424
                 689**************************989999************************************************************9887 PP

                 H.TEEEEEEEE--HHHHHHHTTTSHHHHHHTTSSSSHTTTSS-----SS-SEEEETTT CS
  APS_kinase  99 a.lkfievfvdtplevceerDpkglYkkareGeikeftGidspYeaPenpelvvdtdk 155
                 a   f+ v+v tp+evce+rD kglY++ar+G ++++tGid+pYe P+++++vvdt+ 
  KIR63092.1 425 AgAGFVLVHVATPIEVCEQRDRKGLYARARAGLLTGMTGIDDPYEVPTDADVVVDTTG 482
                 7799***************************************************975 PP

>> PUA_2  PUA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   2.4e-20   1.6e-17      30     120 ..      17     111 ..      10     115 .. 0.86

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 2.4e-20
                 EEE--HHHHHHHHHHHTTTTTT-SCC--HHHHHHHHHHSEETTS-E-SS---EEEECCHCHHHTT-S...E.EEEEETTTEEEEEEEEEEEEE-H CS
       PUA_2  30 sielskrelqdlellaeGgfsPLegFmreedyesvleemrLadgllwsiPivLdvseedakklkegd...r.vaLkdkegellAileveeiyeld 120
                 +++  + el+dlell  G++ PL+gFm+++d  sv  + rLadg  w +P+ L+v ++ a+ l+ +d   r ++L d eg ++A lev+++++ +
  KIR63092.1  17 AYTPRPGELADLELLVSGAYAPLTGFMTRADLASVSRRGRLADGAPWQVPVALQVPAAVADGLDPADparRvLVLSDGEGAPVASLEVTDVWSAR 111
                 555567799*****************************************************76654222424688888*************875 PP

>> ATP-sulfurylase  ATP-sulfurylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   1.2e-15   8.4e-13       2     211 ..     134     318 ..     133     319 .. 0.90

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 1.2e-15
                      CCB.-HHHHHHHHHHTT-SSEEEEEESS---HHHHHHHHHHHHH.TSEEEEEEEB-SB-STTSTTHHHHHHHHHHHHHHHS-GGGEEE-BB-SB CS
  ATP-sulfurylase   2 eyrltPaevreefkekgwdkVvAfqtrnplHraHeellkralee.eadglllhplvgptkpgdvpaevrvrayealieeylpkdrvvlallpla 94 
                      ++r +P+e+r+ +      +V+++ +++plHr + + + +a+++ +a+ ll+   vg+   + +p e+ vra+ a  ++ +p+  ++l+ +pla
       KIR63092.1 134 RLRRSPEEIRALL---PPGRVLGVLADRPLHRPQLAQIAHAARTlGAH-LLVMIPVGEGPINGLPSESLVRAVFAARDR-MPP--ATLVAVPLA 220
                      6788899999777...5579***********************98888.99999*************************.888..588999*** PP

                      ---SCHHHHHHHHHHHHHTT-SEEEE-TTTT-STCSS-TTHHHHHHHHCHHHCTSEEEE---EEEETTTTEEEECCCC..GCCGGEEE--HHHH CS
  ATP-sulfurylase  95 mryaGprEallhaiirknyGcthfivGrdhagvgdfYgpydaqellakvagelgiepvkfeeavYckkegevasektc..hkkeevesisgtel 186
                       r     +all+a+++ +yG+th++   ++               l+      g++++  +e++Y+++ g+      +   + +++  +s+ e+
       KIR63092.1 221 RRRDEISDALLQARVAAAYGVTHLLSTGEM---------------LS----GAGLRVLVPRELAYDNRDGQWRWR--EdiPPRNRRLALSQAEI 293
                      ************************964333...............33....37899**************87544..346999*********** PP

                      HCCHHTT----TTTS-HHHHHHHHH CS
  ATP-sulfurylase 187 rkllregeeipewfsrpevlkvLre 211
                       +ll +g ++pew + p v+k+L++
       KIR63092.1 294 DDLLDRGFPLPEWHTPPAVAKELVR 318
                      ***********************87 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   4.8e-11   3.3e-08       1     117 [.     329     447 ..     329     473 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 4.8e-11
      AAA_33   1 lvllvGlpGsGKstlaerllkklg......avllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrn.vildatnlsrrerarflkla 92 
                 +v+l G +GsGKst a++l+  l       ++ll+ d++rr l +    sk d  +++ r ++++   a++a+ +g + +   a+++ +r     +++a
  KIR63092.1 329 VVFLTGFSGSGKSTIARGLADVLReggdrtVTLLDGDVVRRELSAGLTFSKAD-RDLNVRRIGWV--AAEIARHRGVGiCCPIAPYAAAR--TTAREMA 422
                 89*****************77777777**9999***********966666554.22333333444..66666777777444477776655..5555666 PP

      AAA_33  93 rrlgvpvrivvvetdeetlkeRlak 117
                 + +g+ + +v+v t+ e++++R +k
  KIR63092.1 423 HAAGAGFVLVHVATPIEVCEQRDRK 447
                 666999****************986 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0     7e-08   4.8e-05       4     118 ..     330     447 ..     327     469 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 7e-08
                 EEEE--TTSSHHHHHHHHHHHHHH.TT--EEEE-THHHH.TTSS.S--GGGHHHHHHHHHHHHHHHHTT.SEE.EE-S---SHHHHHHHHHHHHHTT-E CS
       KTI12   4 vvltGlPssGKstrakeLakalee.ekrsvvviddeslgiekds.ykdsakekalRsslrsavkrdLskekvV.IvDslnyikgfRYeLyciakaaktt 99 
                 v ltG+  sGKst+a+ La+ l+e  +r+v+++d + ++ e +   + s++ ++l  + +  v+ ++ +++ V I+  ++ +   R     +a aa   
  KIR63092.1 330 VFLTGFSGSGKSTIARGLADVLREgGDRTVTLLDGDVVRRELSAgLTFSKADRDLNVRRIGWVAAEIARHRGVgICCPIAPYAAARTTAREMAHAAGAG 428
                 668*********************677888899999998666667999********************998766************************* PP

                 EEEEEEE--HHHHHHHHHH CS
       KTI12 100 lcvvyvvapldvlvkwnee 118
                 +++v+v++p +v+ +++ +
  KIR63092.1 429 FVLVHVATPIEVCEQRDRK 447
                 *************998865 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     6e-07   0.00042       2      68 ..     330     398 ..     329     466 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 6e-07
                 EEEESSTTSSHHHHHHHHHHHHHH.TT--EEEEEEEESSCCCCH.HTTEB-HHHHCCHCCCHHHHHHCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   2 aiastkGGvGKTtlaanLaralar.rglrVllvDaDpqannlai.leglendiepdlkrllellealgk 68 
                 ++  + +G+GK+t+a +La  l + + + V l+D D+ +  l+  l  ++ d++ ++ r++ +++++ +
  KIR63092.1 330 VFLTGFSGSGKSTIARGLADVLREgGDRTVTLLDGDVVRRELSAgLTFSKADRDLNVRRIGWVAAEIAR 398
                 5667889*****************5567799******99999977777777777777777777776655 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.2e-06   0.00084      13      60 ..     309     358 ..     297     365 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.2e-06
                 H..HHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--E CS
        MeaB  13 p..eakellerllakaGraqvvGltGvPGaGkstlvealglelrrrGkrv 60 
                 p   akel+++  ++  r  vv ltG+ G+Gkst+   l+  lr+ G r 
  KIR63092.1 309 PpaVAKELVRARPPRRHRGLVVFLTGFSGSGKSTIARGLADVLREGGDRT 358
                 445799*****************************************985 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.6e-06    0.0018       8      56 ..     320     369 ..     313     383 .. 0.82
   2 ?   -2.9   0.0         5   3.4e+03      97     121 ..     475     500 ..     474     501 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.6e-06
  Zeta_toxin   8 kkypsqerPklillgGqpGAGKselaellkdele..rqgnvvrldpDdlRe 56 
                  + p++ r  +++l G +G+GKs++a+ l+d l+   ++ v  ld+D +R+
  KIR63092.1 320 RP-PRRHRGLVVFLTGFSGSGKSTIARGLADVLRegGDRTVTLLDGDVVRR 369
                 44.6779999***********************954445566789999986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5
  Zeta_toxin  97 niivegtlrspdvvkk.laealkkaG 121
                 +++v++t  s+d++ +  +  l + G
  KIR63092.1 475 DVVVDTTGMSIDEAVQaVMHHLTETG 500
                 79999999999998886676666665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   2.6e-06    0.0018      17      51 ..     320     354 ..     314     400 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.6e-06
      AAA_16  17 ervrsgrpelvllsGesGvGKsslvrellralekd 51 
                 ++ r++r+ +v+l+G sG+GKs+++r l++ l++ 
  KIR63092.1 320 RPPRRHRGLVVFLTGFSGSGKSTIARGLADVLREG 354
                 47789999******************999655554 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   0.00021      0.15       2      26 ..     328     352 ..     327     355 .. 0.90
   2 ?    4.8   0.2     0.033        23     108     173 ..     426     496 ..     411     497 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00021
                 -EEEEEE-TTSSHHHHHHHHHHHSS CS
         CPT   2 riilLnGgsssGKsslaralqevld 26 
                  +++L G s sGKs++ar l +vl 
  KIR63092.1 328 LVVFLTGFSGSGKSTIARGLADVLR 352
                 58******************99986 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.033
                 TS-EEEEEEE--HHHHHHHHHH......HTSSSTTHHHHHTTGGGTT---SEEEETTSS-HHHHHHHHHTT- CS
         CPT 108 gldvllVGvrcplevlerRele......rgdRepGlaalqaeavHagaeyDlevDtsaktpeecArairerl 173
                 g  ++lV v  p+ev e+R+++      r++  +G++  +      ++  D+ vDt+ +  +e  +a+ ++l
  KIR63092.1 426 GAGFVLVHVATPIEVCEQRDRKglyaraRAGLLTGMTGIDDP-YEVPTDADVVVDTTGMSIDEAVQAVMHHL 496
                 556899999**********96422222266777777776654.45567779999999999999998887765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   1.1   4.3e-05      0.03      18      53 ..     327     362 ..     322     502 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.3e-05
      AAA_30  18 drvavltGpAGtGKttalkalreaweaaggrviglA 53 
                  +v++ltG  G+GK+t+ ++l++++++ g r + l 
  KIR63092.1 327 GLVVFLTGFSGSGKSTIARGLADVLREGGDRTVTLL 362
                 5799**********************9986665554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.4e-05     0.017      22      39 ..     326     344 ..     318     353 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.4e-05
      AAA_29  22 kg.atlltGpsGsGKSTll 39 
                 +g +++ltG sGsGKST+ 
  KIR63092.1 326 RGlVVFLTGFSGSGKSTIA 344
                 677899***********95 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   3.8e-05     0.026       1      22 [.     330     351 ..     330     388 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.8e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 ++ltG +G+GK+t+a+ L++ l
  KIR63092.1 330 VFLTGFSGSGKSTIARGLADVL 351
                 79****************8654 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.2e-05      0.05       3      44 ..     336     378 ..     334     386 .. 0.84
   2 ?   -2.5   0.0       5.5   3.8e+03     105     123 ..     475     493 ..     466     499 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.2e-05
      CLP1_P   3 kdsGKSTlarlLlNyalrkgrkpv.yvDlDvGqseispPgtis 44 
                 + sGKST+ar L++ + + g ++v ++D Dv   e+s   t s
  KIR63092.1 336 SGSGKSTIARGLADVLREGGDRTVtLLDGDVVRRELSAGLTFS 378
                 689************9999965555******999998776665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.5
      CLP1_P 105 gliIntpGwvkglgaelll 123
                  ++++t+G+  +++++  +
  KIR63092.1 475 DVVVDTTGMSIDEAVQAVM 493
                 589*****98777665544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   9.4e-05     0.065       2      30 ..     329     357 ..     328     362 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.4e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SC CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklp 30 
                 +v+l+G +GsGK+t +++la+ ++eg + 
  KIR63092.1 329 VVFLTGFSGSGKSTIARGLADVLREGGDR 357
                 799********************999765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00012     0.085       2      47 ..     330     377 ..     329     395 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
                 EEEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrrei 47 
                 v+L G +G+gKs++a+ la +l  +   ++ +l  d  +++l  ++ +
  KIR63092.1 330 VFLTGFSGSGKSTIARGLADVLreGGDRTVTLLDGDVVRRELSAGLTF 377
                 89********************99888888888888888888777665 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0031       2.2       4      22 ..     333     351 ..     330     357 .. 0.88
   2 ?    3.6   0.1     0.068        47     181     209 ..     467     496 ..     464     498 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0031
                     E-STTSSHHHHHHHHHHHH CS
  Cytidylate_kin   4 DGPagsGKssvaralaekl 22 
                      G +gsGKs++ar la+ l
      KIR63092.1 333 TGFSGSGKSTIARGLADVL 351
                     688*************876 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.068
                     -S---TT-.EEEETTTS-HHHHHHHHHHHH CS
  Cytidylate_kin 181 pLklaeda.liidtskltieevvekileli 209
                     p ++++da +++dt+ ++i+e v+ +++++
      KIR63092.1 467 PYEVPTDAdVVVDTTGMSIDEAVQAVMHHL 496
                     556667776899************999865 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00012     0.082       7      47 ..     330     371 ..     325     398 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
        ParA   7 avlSgKGGVGKStvavnlAlaLakkg.lkvgllDaDiyGpsi 47 
                 + l g  G GKSt+a  lA  L++ g  +v llD D++   +
  KIR63092.1 330 VFLTGFSGSGKSTIARGLADVLREGGdRTVTLLDGDVVRREL 371
                 55678889**************98762679******986555 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.5     1e+03      13      30 ..     233     251 ..     231     259 .. 0.85
   2 ?   10.7   0.0   0.00075      0.52       1      39 [.     333     375 ..     333     447 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.5
                 HHHHHHHTEEEE.EHHHHH CS
      AAA_17  13 eklvekygfthl.saGdll 30 
                 ++++  yg+thl s+G++l
  KIR63092.1 233 ARVAAAYGVTHLlSTGEML 251
                 489999****965***998 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00075
                 EE-TTSSHHHHHHHHHHHH......TEEEEEHHHHHHHHHHTTTS CS
      AAA_17   1 lGgPGsGKgtqceklveky......gfthlsaGdllreeakrggl 39 
                 +G  GsGK+t+++ l++ +       +t l  Gd++r e + g l
  KIR63092.1 333 TGFSGSGKSTIARGLADVLreggdrTVTLLD-GDVVRRELSAG-L 375
                 699************9877666553455555.*****998654.3 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00019      0.13      10      36 ..     326     352 ..     324     397 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00019
                 TTSEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagllk 36 
                 +g +v ++G +G+GKSt+++ la  l+
  KIR63092.1 326 RGLVVFLTGFSGSGKSTIARGLADVLR 352
                 677999*************99988776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00021      0.15       4      30 ..     326     352 ..     323     375 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00021
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqld 30 
                 +  ++++tG sG+GK+t +r l++ l 
  KIR63092.1 326 RGLVVFLTGFSGSGKSTIARGLADVLR 352
                 567889**************9988764 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00029       0.2      18      48 ..     330     360 ..     321     370 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00029
  TrwB_AAD_bind  18 ilivGttGsGKtqalekllrairargdraiv 48 
                    ++++G  GsGK++ +++l + +r+ gdr + 
     KIR63092.1 330 VFLTGFSGSGKSTIARGLADVLREGGDRTVT 360
                    789*************************985 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00033      0.23       2      27 ..     330     355 ..     329     362 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00033
                 EEEE--TTSSHHHHHHHHHHHH...G CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssg 27 
                 vf+TG +G+GK+T+ + ++++l++ g
  KIR63092.1 330 VFLTGFSGSGKSTIARGLADVLREGG 355
                 8********************98765 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1    0.0005      0.35       3      41 ..     329     368 ..     327     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0005
                 EEEEEESTTSSHHHHHHHHHHHHHHT.TS-EEEEEESTSS CS
       SRP54   3 villvGlqGaGKTttlaKLaallkke.gkkvllvaaDtfR 41 
                 v+ l G+ G+GK t +  La++l++   ++v l   D+ R
  KIR63092.1 329 VVFLTGFSGSGKSTIARGLADVLREGgDRTVTLLDGDVVR 368
                 7899*********************977889999999998 PP

>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00054      0.38       2      37 ..     329     371 ..     328     376 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00054
                 EEEEEESTTSSHHHHHHHHHHT.......T-EEEEHHHHHHHT CS
        CoaE   2 ivgltGgiasGKstvanlfadl.......gvpivDaDlvArqv 37 
                 +v ltG  +sGKst+a+ +ad+        v+++D D+v r++
  KIR63092.1 329 VVFLTGFSGSGKSTIARGLADVlreggdrTVTLLDGDVVRREL 371
                 899************9988874233333358899999998886 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00046      0.32      20      57 ..     325     362 ..     312     388 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00046
                 HCTS-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEE CS
        PIF1  20 ekgklfFvtGsgGtgKtflwkallkklrsegkivlavA 57 
                 ++g ++F+tG++G+gK+ + + l  +lr+ g+ +++  
  KIR63092.1 325 HRGLVVFLTGFSGSGKSTIARGLADVLREGGDRTVTLL 362
                 57889************************999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 3645.80
//
Query:       KIR63093.1  [L=198]
Description: hypothetical protein TK50_19560 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-29  100.5   0.0    8.9e-29  100.1   0.0    1.2  1  DM13           Electron transfer DM13
  ------ inclusion threshold ------
        4.9    7.8   8.7        1.8    9.2   3.5    2.2  2  Ribosomal_60s  60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> DM13  Electron transfer DM13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.0     1e-32   8.9e-29       2     104 .]      89     194 ..      88     194 .. 0.97

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 1e-32
        DM13   2 fssdehgtsGtvsivd..d..ktlelegfatdgkgpdlkvwlgkseapsskkgf.kipdedgvtlgplkaykgeq.ytlelpagvdladyksvsvWcer 94 
                 f+++eh+tsG+++iv+  d  + lel g++t ++gpdl+vwl++++++++ +g+ +++d++ v+lg+lk+++g+q y +  pag dl+ ++svs+Wc+r
  KIR63093.1  89 FVTHEHDTSGSARIVRtpDgrHRLELVGLDT-SNGPDLRVWLTDQPVREGVAGWrVFDDGRRVELGRLKGNRGDQaYDI--PAGTDLTALTSVSIWCKR 184
                 99**************87589*********9.9*****************99***************************..****************** PP

        DM13  95 fnvnFGaakl 104
                 f+v+FGaa+l
  KIR63093.1 185 FSVSFGAAPL 194
                 ********87 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2     0.064   5.8e+02      39      56 ..       6      24 ..       1      28 [. 0.49
   2 ?    9.2   3.5    0.0002       1.8      29      68 ..      34      75 ..      32      82 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.064
                   XXXXXXXXX.XXXXXXXXX CS
  Ribosomal_60s 39 langaakla.aaaaaaaaa 56
                   l+++ + +a a++aa+aaa
     KIR63093.1  6 LHKPLTWIAvAVVAAGAAA 24
                   5555544433444444444 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0002
                   XXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s 29 alegkdieellangaakla..aaaaaaaaaaaaaaaaaaaee 68
                    +++ +++e l+++aa  a  a+++a+++a ++++a+ +a++
     KIR63093.1 34 LVTDTEVDETLSAVAATTApaASGPAGTPATGPGSASSPAAA 75
                   568899********9998876455555555555554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.46
# Mc/sec: 1290.82
//
Query:       KIR63094.1  [L=304]
Description: vacuolar transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-32  113.1   0.1      3e-32  112.1   0.1    1.4  1  VTC       VTC domain


Domain annotation for each model (and alignments):
>> VTC  VTC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.1   1.6e-36     3e-32       1     273 [.      50     277 ..      50     278 .. 0.89

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 1.6e-36
                 --EEEEEEE-HHHHHHHHHHHHTTS-B----------------------EEEEEEE-TT-HHHHHHHHT-TT--EEEEEEES-GGG-....-EEEEEEE CS
         VTC   1 nrnetKywvhsdnvvevktlilkhlpvlvygaseeeiaaallrksadqtitsvYfDnndfelyenrilkmegaekiRlRwygkldne....dvflErkt 95 
                 nr+e+Ky+v+  +v  ++++++ +l ++  g            ++  + + svY+D+ d+ +y ++i++ + ++k+R+R yg+ ++     +v++E+k+
  KIR63094.1  50 NRYEIKYLVETTKVAALRRELAARLATDSNG------------GNSGYGVWSVYYDTADLRFYWEKIEGLRFRRKLRVRHYGDRSTIdddtTVYVEIKQ 136
                 799****************************............899************************************544333469******** PP

                 E--------EEEEEEEE-GGGHHHHH---HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEEEE--TT.--SEEEEEEEEEEE CS
         VTC  96 kheswtgesstkerftlkqkfvksyllgrlpaeerleklkkkeeekevekleqlaeeiqntilrnslqPvvrtsYlRaaFqlst.dnavRitiDtnlcm 193
                 +     +  ++k+r++l  +++  +++     + ++e + +         ++  +ee+ +++   +l+Pv  t Y+R+aF++++ d  +R+t+D++++ 
  KIR63094.1 137 R----VNRVTQKRRIALPYREARRLCDE----RAMVEHDPS---------QRGFVEEVLELVSGLDLRPVAMTGYHREAFVGQDsDLGLRVTLDHRVRG 218
                 *....*********************22....344444433.........3469****************************996779*********** PP

                 EE----SSSS-SS-TSS-SSTTSS-TTTT--GGGEEE--SEEEEEEE------HHHHHHHTSTT-EE-TT--HHHHHHHH CS
         VTC 194 vredsfeerrkledtwerldedvqqpvkllrkgevvrfpyavlEvKlqtskspewiqeLlashlvievpkfSKYqhgvas 273
                 ++             +  l  d        ++  +v   ++v+E+K+++ + p w+++L a+ ++  v  +SKY+++v++
  KIR63094.1 219 RDR------------DFHLGAD-------AENRLIVPARLSVVEIKANE-RVPYWLTDLAARAELSVVR-VSKYCQSVEA 277
                 *99............6677777.......455559999***********.***************9998.******9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2193.46
//
Query:       KIR63095.1  [L=225]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-17   63.9  10.1    2.3e-17   63.2  10.1    1.3  1  DUF4956   Domain of unknown function (DUF4956)
     0.0006   20.2  12.5      0.001   19.4  12.5    1.3  1  MgtC      MgtC family
  ------ inclusion threshold ------
       0.01   15.7   3.5       0.01   15.7   3.5    2.0  2  DUF4271   Domain of unknown function (DUF4271)
       0.12   11.7   8.8       0.12   11.7   2.2    2.0  2  DUF3810   Protein of unknown function (DUF3810)


Domain annotation for each model (and alignments):
>> DUF4956  Domain of unknown function (DUF4956)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2  10.1   5.1e-21   2.3e-17       8     172 .]      30     188 ..      25     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 5.1e-21
     DUF4956   8 lvrglYykrhrrr....dlvftflllnvgvfavvlllasvevsiglglGLfgvlsilRlRseeisvrevtYlFvaialglinglaslslvellvlnvli 102
                 ++ ++Y  +hr+     ++v t+++l++++++++l++    ++i+ +++L+g ls++R+R++  ++r+v ++F+++ +g+++g++ + ++ ++++ ++ 
  KIR63095.1  30 MIGWVYRATHRNVsysqSYVQTLIILGMLISLIMLVV---GSNIARAFALVGALSVVRFRNAIKETRDVGFIFLVMGVGMACGTR-FYTLAIAAAIAIS 124
                 445566666655433449999**********999999...99*****************************************85.3334444444444 PP

     DUF4956 103 vlvlallesprllkkerrklvtldrieliapedeeeliadleerlglkvteveveeidfvrdtavlevrY 172
                 +++++++  ++++ + +r++v+++       +   + +a++++ l    te+e+++++ +r  a+ e++Y
  KIR63095.1 125 LIIVVMYRFNWFALNVQRQVVKVQ------LPAGGNHTAEIQDVLVRYTTEFELVSLESIRAGALTELMY 188
                 55555555566667779****996......47789999***********************999988877 PP

>> MgtC  MgtC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4  12.5   2.2e-07     0.001       1     117 [.      21     132 ..      21     135 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.2e-07
        MgtC   1 LllAlllGlliGleRel.rek....aaGlRTfaLvalgaalfvllslelaesrvaaqvvsgigflgagvilkekegakvkglTTaaslwvtaaiGllvg 94 
                 L l++ll+++iG+     +++    +  + T ++ +++ +l++l+        v ++++ + +++ga+ +++ +  +++k       +++++++G+++g
  KIR63095.1  21 LSLSFLLSAMIGWVYRAtHRNvsysQSYVQTLIILGMLISLIMLV--------VGSNIARAFALVGALSVVRFR--NAIKETRDVGFIFLVMGVGMACG 109
                 6789********9654414447777899*****************........999***************555..48999999999************ PP

        MgtC  95 lglyllavvatvlvllllallre 117
                 + +y+la++a++++ l+++++ +
  KIR63095.1 110 TRFYTLAIAAAIAISLIIVVMYR 132
                 ***************99998866 PP

>> DUF4271  Domain of unknown function (DUF4271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   3.5   2.3e-06      0.01      94     160 ..      16      81 ..       9      92 .. 0.77
   2 ?   -1.2   2.1      0.35   1.5e+03      86      99 ..     118     131 ..      79     148 .. 0.52

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.3e-06
     DUF4271  94 illlylllKlllykllgwlFfdkkkirqwifsylsylsllglllfplvlllvyfplssqillilili 160
                  +++ l l +ll +++gw++    ++ ++ +sy+++l++lg+ l+ l++l+v ++    ++l+ +l 
  KIR63095.1  16 DIAIALSLSFLLSAMIGWVYRATHRNVSYSQSYVQTLIILGM-LISLIMLVVGSNIARAFALVGALS 81 
                 577888999********************************5.555555555555555555555554 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.35
     DUF4271  86 lllliiflilllyl 99 
                    + i+li+++++
  KIR63095.1 118 AAAIAISLIIVVMY 131
                 11222222222222 PP

>> DUF3810  Protein of unknown function (DUF3810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.2   2.8e-05      0.12      22      83 ..      12      71 ..       6      76 .. 0.88
   2 ?    4.1   0.8    0.0054        24      55     115 ..     111     171 ..      70     197 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.8e-05
     DUF3810 22 FSvgellivllillvilylvlaiklkkrkkkkkrllkvllrvllvllvvyflftllwglnYy 83
                FSvg++ i+l++ +++ +++ ++   + ++++ +  + ++++l++l +++ l +l+ g n  
  KIR63095.1 12 FSVGDIAIALSLSFLLSAMIGWV--YRATHRNVSYSQSYVQTLIILGMLISLIMLVVGSNIA 71
                9***************9999999..3466777899999999999999999999999998865 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0054
     DUF3810  55 rllk.vllrvllvllvvyflftllwglnYyreplserlglkkeeyseeelaelaeklvekln 115
                 r+++ ++ +++++ l++++++ ++w+ +  + ++ + ++l +  + ++e+++++ +++++ +
  KIR63095.1 111 RFYTlAIAAAIAISLIIVVMYRFNWFALNVQRQVVK-VQLPAGGNHTAEIQDVLVRYTTEFE 171
                 234414445555556666666789987766666655.5567788888888888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1054  (0.0587874); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1539.43
//
Query:       KIR63096.1  [L=571]
Description: spore coat protein CotH [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-33  115.3   0.0    7.3e-33  114.4   0.0    1.3  1  CotH      CotH kinase protein
  ------ inclusion threshold ------
      0.022   14.9   0.9      0.056   13.6   0.9    1.7  1  YfhD      YfhD-like protein


Domain annotation for each model (and alignments):
>> CotH  CotH kinase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.0   8.2e-37   7.3e-33      15     285 ..     214     534 ..     206     564 .. 0.90

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 8.2e-37
        CotH  15 SfrlkfdkkneekkekleGlkkliLnaefnD..psllrnklaydLfralgvpaprarfvelyvngeyqGlYllvErvdkkllkahgldkdgslykaddk 111
                 ++ + fd++  +++++++G ++++ +  ++    + l ++la++L+++ g  a+r+++ +  vn++     llvE++d+++ ++ g    g lyk    
  KIR63096.1 214 PWLISFDEF--VDGRRYQGHREVAVRVAGMGggSTVLNEALALSLLDSTGEAAQRYAYSSFTVNDRPTAARLLVEHPDENFADQMG--GTGVLYKSL-- 306
                 677889999..889999999999998777776699**************************************************7..69*****99.. PP

        CotH 112 sdaelkleegkeekyqkkeekktdegeeedwedlselinflnnsseaefeaeleeyiDvesfldylivnilisntDsy...snnyylyskdkngkwrfi 207
                 ++++++ + +++++y++++++ t  ++++d + + +li+++n +s++ef+a+l +++Dvesf++y ++++l+ n+D +   ++nyyl+ + +++k+++i
  KIR63096.1 307 ASSSFTDQGDDQTDYTDDFKQIT-MKGSQDLQPVINLIKWVNSASDEEFDAQLADRVDVESFARYVALQNLLLNFDDMsgpGKNYYLWYDLETKKFSVI 404
                 9***************9988875.5556***********************************************988899*******999******** PP

        CotH 208 pWDlDnafgrted.....................................................eskaetrdepeegganpeenvLfrrlldnpefr 253
                  WD++++f+ +                                                       e+ +  + e  + g +++   L +r+l++++f+
  KIR63096.1 405 SWDHNLTFSGNASqgphdsggfgmrggmqppegmqlpegmqlpegmqlpegmdlpegmqppgggatEQEGG-NAERGRVGGMMTGHKLKERFLASDAFK 502
                 *********99999***********************************************9985433333.455567788999999************ PP

        CotH 254 erlkarleelldgvlseerleakidalhalia 285
                 e ++++++el ++v ++ r++  +da++ +++
  KIR63096.1 503 EVYEDAYRELYQQVYASGRATGALDAITGVLK 534
                 **************999999999999988876 PP

>> YfhD  YfhD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.9   6.3e-06     0.056      29      51 ..     350     372 ..     346     375 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.3e-06
        YfhD  29 iDvEfSkelADheDleAnaRaka 51 
                  D+Ef++ lAD+ D+e+ aR+ a
  KIR63096.1 350 SDEEFDAQLADRVDVESFARYVA 372
                 59******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 3833.94
//
Query:       KIR63097.1  [L=227]
Description: hypothetical protein TK50_19580 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.0   3.5       0.22   11.5   0.7    2.6  2  DUF4574   Ubiquinol-cytochrome-c reductase complex assembly f
        1.2    9.6  21.4        1.5    9.3   2.3    3.1  3  MerC      MerC mercury resistance protein
          2    8.0  32.5    1.2e+02    2.1  32.3    2.7  1  TauE      Sulfite exporter TauE/SafE


Domain annotation for each model (and alignments):
>> DUF4574  Ubiquinol-cytochrome-c reductase complex assembly factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.12   7.3e+02      10      30 ..     117     137 ..     107     145 .. 0.82
   2 ?   11.5   0.7   3.6e-05      0.22       9      32 ..     144     172 ..     137     175 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.12
     DUF4574  10 vvallgaGaGlGsaLfvLvtP 30 
                 v+++l   aG+G+ L+  + P
  KIR63097.1 117 VLVMLPCLAGVGTYLWRPTDP 137
                 567788889******977777 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 3.6e-05
     DUF4574   9 svvallg.aGaGlGsaLfv....LvtPge 32 
                  +vall+ aGaG+G+aL++    Lv Pge
  KIR63097.1 144 RTVALLAlAGAGVGVALMLirhrLVDPGE 172
                 5666665489********94444578887 PP

>> MerC  MerC mercury resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.3   0.00026       1.5      52     107 ..      20      71 ..      10      77 .. 0.78
   2 ?   -0.7   6.2      0.32   1.9e+03      39      87 ..      61     110 ..      54     128 .. 0.59
   3 ?    8.9   4.7   0.00033         2      22     107 ..     119     214 ..     114     222 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00026
        MerC  52 lalvvgyrrhrktsvlvlgalGllillvalflgteaeetl.lfgslwqvltvlGaal 107
                 ++  ++y +h++ +v+ l+a+G ++ ++  +++     t+  f++++ ++ + Ga++
  KIR63097.1  20 ATPRRTYPKHTRHWVTSLAAAGAAVAATTSVAQ-----TAgRFHWWAGFVLIPGALI 71 
                 56667899*****************99888888.....2325788888888888764 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.32
        MerC  39 hqvllilvvaigllalvvgy.rrhrktsvlvlgalGllillvalflgtea 87 
                    +li +++ig ++ ++ +    r +   v+g++Gll++ v+++l+t++
  KIR63097.1  61 AGFVLIPGALIGAAGGALLArGGGRAFAGYVVGCVGLLVFTVGALLMTGT 110
                 33344445555555444444134577788899***********9999322 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00033
        MerC  22 lallpllglsf.lasel......lhqvllilvvaigllalvvgyrrhrktsvlvlgalGllillvalflgteaeetl...lfgslwqvltvlGaal 107
                 ++l  l g +  l  +       lh+++++l++a +++++++   rhr   +    + G ++l+++l++g++a e++       l +v+ +lG a+
  KIR63097.1 119 VMLPCLAGVGTyLWRPTdplargLHRTVALLALAGAGVGVALMLIRHRLVDPGETHWWGGFVLAAGLLVGGNAVEVArhrMPYRLQAVTLLLGPAV 214
                 44333333322222333344888***********************************************88888884333334445555555555 PP

>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1  32.3     0.021   1.2e+02      38     229 ..      34     211 ..      25     223 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.021
        TauE  38 atsllavvatslsgalahrrrgnvdwrlllllllgsliGallGallllllpsellkllfgvlllllallm.llrkkrsrakgrerrptaillvligglv 135
                 +tsl+a++a  ++ +      g+++w ++ +l++g+liGa  Gall+     ++   ++g++ ll+     ll+ +    +     +++++lv++ +l+
  KIR63097.1  34 VTSLAAAGAAVAATTSVAQTAGRFHWWAGFVLIPGALIGAAGGALLARGGGRAFAGYVVGCVGLLVFTVGaLLMTG----T---MGEGWPVLVMLPCLA 125
                 46776666555554444444489***********************997666654444444333333333122332....1...223344333332334 PP

        TauE 136 GllsGllGiGgGfllvpllllllglplkkavatslllilvislagalgy.al..agavdwpllllllpgallGallGarlarrlsertlrrlfalll 229
                 G ++++l   + +       l     l+++va+ +l+ + +++a +l+   l   g  +w+ +++l++g l+G+     +++r++  +l+++ +ll 
  KIR63097.1 126 G-VGTYLWRPTDP-------L--ARGLHRTVALLALAGAGVGVALMLIRhRLvdPGETHWWGGFVLAAGLLVGGNAVEVARHRMPY-RLQAVTLLLG 211
                 4.34444444443.......3..446888888888888888887777742224688888999999999999999999999999887.4444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1588.81
//
Query:       KIR63098.1  [L=872]
Description: valine--tRNA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-83  279.5   0.0      6e-62  209.7   0.0    3.0  2  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
    2.3e-24   86.1   0.0    3.3e-24   85.6   0.0    1.2  1  Anticodon_1   Anticodon-binding domain of tRNA
    1.1e-14   54.0   0.0    2.4e-07   29.8   0.0    2.9  3  tRNA-synt_1g  tRNA synthetases class I (M)
    7.2e-06   25.2   0.0    0.00049   19.1   0.0    2.1  2  tRNA-synt_1f  tRNA synthetases class I (K)
     0.0001   21.8   0.0      0.066   12.5   0.0    2.1  2  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   1.7e-21   6.1e-18       2      86 ..      25     108 ..      24     113 .. 0.91
   2 !  209.7   0.0   1.7e-65     6e-62      90     601 ..     133     624 ..     126     625 .. 0.92

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 1.7e-21
  tRNA-synt_1   2 lyekWeeedvfkkelekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklga 86 
                  +  +W++++++    +++ +++ +++  +PP v G+lH+Gh++  t  d+v r++rm+G +v y +GwD  Gl++e  v++ +g 
   KIR63098.1  25 WARRWQDDGTYAFD-RTKTRADVYSIDTPPPTVSGELHMGHVFSYTHTDTVARFQRMRGRTVFYPMGWDDNGLPTERRVQNVYGV 108
                  6689*******988.44455999********************************************************988775 PP

  == domain 2  score: 209.7 bits;  conditional E-value: 1.7e-65
  tRNA-synt_1  90 kerkklgreefrekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkkdal 187
                  k+ + ++r +f+e +        +  +  ++rlG svD++  y T+      a +++f r   +g  y+++ +  w++  +ta++++E e ++  +a 
   KIR63098.1 133 KNPTPISRRNFVELCGTLTVVDEQAFEALWRRLGLSVDWSLTYTTIGRAARVASQRAFLRNLARGEAYQAEAPTLWDVGFATAVAQAELEDRERPGAY 230
                  455678999***************************************************************************************** PP

  tRNA-synt_1 188 ihvafpladkeevklviaTTtPeTllgdtavavnpeldyvitkeklilaeallkslvkkesekkiledergkeLegkevelplvnrkipiiaddyvdk 285
                    ++f   +++e  + i TT+Pe l++ +a++ +p+                               der+++L+g  v+ p+ + ++p+ a   +d 
   KIR63098.1 231 HRLRFAGPGGRE--VLIDTTRPELLPACVALVCHPD-------------------------------DERYADLVGAVVRTPVFGVAVPVRAHPLADP 295
                  ******999999..99********************...............................9****************************** PP

  tRNA-synt_1 286 eaGtGvVkiaPahdedDyevgkkynlevinildedgtlteea.........aefeglkvfdarkkvveelkekglllka.ekiehsvpfcerskkpii 373
                   +GtGv  +    d  D +  ++ +l++ +++  dg+l  e          a  +g++v  ar++vv  l + g l+ +  ++ h v f e+++ p++
   KIR63098.1 296 AKGTGVAMVCTFGDLTDVTWWRELQLDTRVVIGRDGRLLPEPpagvpagpyAALAGQTVAGARRAVVGLLADAGDLVGEpRPVVHPVKFYEKGDRPLE 393
                  ******999999999************************99999****99999*********************999653789*************** PP

  tRNA-synt_1 374 yrateqWfvrvke....ladaalkavekvqfvpkskekryaswleni.qdWciSRqrwWGhriplfvs.keteevvvreelk.elvagreeeeaekka 464
                    +t qW+ r       l++++l+   + ++vp   ++ry++w+     dW +SRqr+ G+++p+++  ++t+e  + + l+ +  a  +  ++e   
   KIR63098.1 394 IVSTRQWYLRNGGrdagLRAELLARGGELNWVPGHMRSRYEHWVGGLtGDWLVSRQRFFGVPVPVWYRlDDTGEPDFAHPLTpDESALPVDPSGEPPP 491
                  *********98777788***************************98627*****************97467888888664441444444444444444 PP

  tRNA-synt_1 465 lekeakdklkkekgelekdedvlDvWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGr 562
                        ++l+   g +  d+dvlD+W  S+++p  + g+ +   + + ++fp+d+  +G  iir W+   +  +    g  P+++ +++g ++d + +
   KIR63098.1 492 ---GYDESLRGLPGGFVGDPDVLDTWATSSLTPQIVGGWETD-PDLFGRVFPMDLRPQGQEIIRTWLFATVARAHLEHGVLPWRDAVLSGWILDPDRK 585
                  ...4556666669*************************9877.88899*******************99999888889999***************** PP

  tRNA-synt_1 563 KmSKslgNvidpldvikkygadalRltlilsdvgrdinl 601
                  Km Ks+gNv+ p+ ++k+yg da+R++ ++   g d+++
   KIR63098.1 586 KMAKSKGNVVTPMALLKQYGSDAVRYWAASGRPGMDLAF 624
                  *****************************9999998876 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0   9.3e-28   3.3e-24       1     148 [.     682     825 ..     682     829 .. 0.84

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 9.3e-28
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkraaqevllevletllrllaPfmPfitEelwqreeeelgk 98 
                  d  +l+el+ +v+++t a++ y+   a++a  +ffw  +cd y+elvk+r y+  +   ++a+++l+++l+  lrl+aP++Pf+tEe+w        +
   KIR63098.1 682 DTAMLAELSGVVATATSAFDAYDHTAALQATESFFWR-FCDDYIELVKERAYGTGPGA-DSARAALATALSVQLRLFAPVLPFVTEEVWS----W-WR 772
                  6689********************************8.**************977633.4799**************************2....2.44 PP

  Anticodon_1  99 kesimlaewpekaeel...ekele...eeevellkeivkairklrselkikpssel 148
                    s+++a+wp ++e                + l+ +++  +r+++se k + ++e+
   KIR63098.1 773 YGSVHRAPWPTTYEVDraiG---GaadAGLLRLASDALGQVRRAKSERKQSMKAEV 825
                  478*******8775545542...123378889988999999999999998888775 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   6.8e-11   2.4e-07       3      55 ..      49     101 ..      47     106 .. 0.92
   2 ?   -0.4   0.0       0.1   3.6e+02     209     238 ..     428     457 ..     388     466 .. 0.79
   3 !   20.1   0.0   6.3e-08   0.00023     315     385 ..     574     641 ..     552     645 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 6.8e-11
                   EEE--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHH CS
  tRNA-synt_1g   3 vttalpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielk 55 
                   + t+ p ++g+lH+Gh+ ++  +D +aR++r+rg+ v++  g D  G p+e +
    KIR63098.1  49 IDTPPPTVSGELHMGHVFSYTHTDTVARFQRMRGRTVFYPMGWDDNGLPTERR 101
                   67888999*****************************************9876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.1
                   HHHHHH.HHHHT----EE-ESS-SSS-EET CS
  tRNA-synt_1g 209 nvkkivkewlkegLkdlaisrdldwGipvP 238
                   ++++  ++w+     d+ +sr+  +G+pvP
    KIR63098.1 428 HMRSRYEHWVGGLTGDWLVSRQRFFGVPVP 457
                   566777889888778**************9 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 6.3e-08
                   EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE-HHHHHHHHHHHCCCHHHH CS
  tRNA-synt_1g 315 vvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaeapekkDldfswedfvervNseLadklgn 385
                   v +   l  + kK+ kS+g+vv++  +l+++ +d++RY+ a+ +p + Dl f    ++ rv + La kl n
    KIR63098.1 574 VLSGWILDPDRKKMAKSKGNVVTPMALLKQYGSDAVRYWAASGRPGM-DLAFD--PAQIRVGRRLATKLLN 641
                   444445567889***************************99888764.55554..4445666666666665 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0    0.0062        22      32      70 ..      55      93 ..      24     103 .. 0.83
   2 !   19.1   0.0   1.4e-07   0.00049     273     322 ..     578     627 ..     572     631 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0062
  tRNA-synt_1f 32 spSGliHiGnlrevltadlvaralrkrgeevrlilisDd 70
                  ++SG +H+G +     +d var  r rg +v   + +Dd
    KIR63098.1 55 TVSGELHMGHVFSYTHTDTVARFQRMRGRTVFYPMGWDD 93
                  89*********************9999999888777777 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 1.4e-07
  tRNA-synt_1f 273 lillkggekmssSkGnvltledwlevaepevlrflilrrkPkkakkldld 322
                   +il+  ++km +SkGnv+t+  +l+ +  + +r+  ++ +P   + +d+ 
    KIR63098.1 578 WILDPDRKKMAKSKGNVVTPMALLKQYGSDAVRYWAASGRPGMDLAFDPA 627
                   999**************************************999888876 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0009       3.2      17      50 ..      54      87 ..      39      92 .. 0.87
   2 !   12.5   0.0   1.8e-05     0.066     247     292 ..     580     625 ..     559     633 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0009
                  EBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEE CS
  tRNA-synt_1e 17 ptvydashlGhaRslvafDilrrilqalgYdvqf 50
                  ptv  + h+Gh+ s+  +D ++r+ +++g  v +
    KIR63098.1 54 PTVSGELHMGHVFSYTHTDTVARFQRMRGRTVFY 87
                  8**********************99999987766 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.8e-05
                   EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS-TTS-EEE- CS
  tRNA-synt_1e 247 lkiegekmsksLknfitikdvlkkfdprqlRllllsahyrsqldfk 292
                   l  +++km+ks +n++t  ++lk++ + ++R+  +s +    l f+
    KIR63098.1 580 LDPDRKKMAKSKGNVVTPMALLKQYGSDAVRYWAASGRPGMDLAFD 625
                   456899**************************99887766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (872 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 5842.50
//
Query:       KIR63099.1  [L=619]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-43  148.9   0.1    2.8e-43  148.6   0.1    1.1  1  ABC_membrane    ABC transporter transmembrane region
    1.2e-30  106.8   0.0    1.9e-30  106.2   0.0    1.3  1  ABC_tran        ABC transporter
    0.00091   19.6   3.5     0.0013   19.2   2.1    2.0  2  AAA_16          AAA ATPase domain
  ------ inclusion threshold ------
      0.018   15.0   0.0      0.037   13.9   0.0    1.4  1  RsgA_GTPase     RsgA GTPase
      0.022   14.5   0.1      0.051   13.3   0.1    1.5  1  AAA_29          P-loop containing region of AAA domain
      0.023   14.5   0.2        1.7    8.4   0.0    2.2  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
      0.038   13.2   0.8      0.091   12.0   0.8    1.6  1  ABC_membrane_3  ABC transporter transmembrane region
      0.072   12.5   0.0       0.26   10.7   0.0    1.6  1  SMC_N           RecF/RecN/SMC N terminal domain
        0.1   12.9   0.0       0.25   11.6   0.0    1.7  1  AAA_22          AAA domain
       0.12   12.2   0.1         21    5.0   0.0    2.3  2  NTPase_1        NTPase
       0.14   12.0   0.4        4.7    7.1   0.1    2.3  2  NACHT           NACHT domain


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.6   0.1   1.7e-46   2.8e-43       4     274 .]      39     307 ..      36     307 .. 0.99

  Alignments for each domain:
  == domain 1  score: 148.6 bits;  conditional E-value: 1.7e-46
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHH CS
  ABC_membrane   4 iillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGel 100
                   ++++a++a+++s+++plv +r++d  +   dp    l+++  l lllgla+++l +++ +  +  +  ++ ++r++++ ++ r+p +f+d+ ++G+l
    KIR63099.1  39 LLVAALAATGASLAVPLVVQRVVDGPVARHDPGG--LVRLGGLALLLGLAEALLIFIRRWAQTSSSVGMEATIRADIYAHLQRLPAGFHDRWQTGQL 133
                   6899******************************..************************************************************* PP

                   HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTT CS
  ABC_membrane 101 lsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafg 197
                   lsr+t+d+s +r +l++ l+ ++ +l+t v+++++++ l + l l++ a ++ ++l+s  +++  + +++++q++ +++ +++eE+ +g+rt ka+g
    KIR63099.1 134 LSRVTSDLSVIRRFLSFGLLFLVLNLVTYVAVVVLLVRLHPTLGLLVAASAVPLFLISRRFGRYYHAASRRMQDQQGDVATLVEETAQGLRTMKAYG 230
                   ************************************************************************************************* PP

                   THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 198 reeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                   r ++   +f +  +  +  g+ k ++ + +++ ++l+++l   ++l+ G++   +g+l++g+lv+f+sl  +l++++
    KIR63099.1 231 RGPELAARFADGARALHDTGVAKSRLLARTSALFDLVPNLTLGVVLVAGAVAAARGALTIGELVAFVSLQLMLIWPV 307
                   **************************************************************************996 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.0   1.1e-33   1.9e-30       1     136 [.     372     519 ..     372     520 .. 0.90

  Alignments for each domain:
  == domain 1  score: 106.2 bits;  conditional E-value: 1.1e-33
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH....HHHTCHHHHHHHSTTG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren....esdeeiekalsklglk 95 
                 l+ ++l++++ge++a+vG +G GKStLl+l+ +l++  +G+i+ldg+d+++ +l slr+ +gv ++ep+lf+ + v en      d++++++++ l l 
  KIR63099.1 372 LRGIDLTVEPGETLALVGATGVGKSTLLSLVPRLHDVSAGRITLDGHDVRDLQLASLRRLVGVAFEEPTLFSMS-VWENltlgRPDADADEVRAALALA 469
                 67899********************************************************************9.********5555555555555555 PP

                 G.........TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 x.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  96 e.........lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +           +t+v++++ +LSgGq+qr+alara+l +p +l+lD+p 
  KIR63099.1 470 QadfayelpwGLATRVGEQGLTLSGGQRQRLALARAVLGRPAVLVLDDPL 519
                 55556688888899999*******************************97 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.5   8.9e+03      33      42 ..     249     258 ..     207     277 .. 0.68
   2 !   19.2   2.1   7.7e-07    0.0013      24     162 ..     381     537 ..     375     547 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.5
      AAA_16  33 sGvGKsslvr 42 
                  Gv Ks+l+ 
  KIR63099.1 249 TGVAKSRLLA 258
                 3455555543 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 7.7e-07
      AAA_16  24 p.elvllsGesGvGKsslvrellralekd.ggiflrgkcdqlesaipysalaqalareellrqllde................aesaeleawrekleea 104
                 p e + l+G+ GvGKs+l+  ++r    + g i+l g+ ++          +q+++ ++l+    +e                +     +a++++ ++a
  KIR63099.1 381 PgETLALVGATGVGKSTLLSLVPRLHDVSaGRITLDGHDVRD---------LQLASLRRLVGVAFEEptlfsmsvwenltlgrP-----DADADEVRAA 465
                 347899*****************8444444577788888888.........555555566666666655666666655333321.....2222222222 PP

      AAA_16 105 la..................avpelagaea..srllellkrllallsrderplvlvlDd.lqwadeaslqllaaLlrll 162
                 la                    + l+   +  +r + +l+r++      +rp vlvlDd l  +d ++ +l +a lr++
  KIR63099.1 466 LAlaqadfayelpwglatrvGEQGLTL--SggQRQRLALARAV-----LGRPAVLVLDDpLSALDVHTEALVEAALRRV 537
                 224455566777777766443333333..24488888888888.....5789*****9857788888888888887774 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.3e-05     0.037      99     119 ..     382     402 ..     373     418 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-05
                  TSEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinal 119
                  ++t +lvG +GvGKStL+  +
   KIR63099.1 382 GETLALVGATGVGKSTLLSLV 402
                  48999************9755 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   3.1e-05     0.051      17      39 ..     377     399 ..     372     403 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
      AAA_29  17 ieidlkgatlltGpsGsGKSTll 39 
                 +++++ ++  l+G++G+GKSTll
  KIR63099.1 377 LTVEPGETLALVGATGVGKSTLL 399
                 5677777899************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0011       1.7       3      26 ..     386     410 ..     385     432 .. 0.77
   2 ?    4.0   0.1     0.022        36     237     286 ..     492     542 ..     470     577 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0011
      AAA_21   3 vliGpNgsGKSnLLdaldllarl.d 26 
                 +l+G+ g+GKS+LL +   l+++ +
  KIR63099.1 386 ALVGATGVGKSTLLSLVPRLHDVsA 410
                 79************99877777652 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.022
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHP...kll.rrllellkels 286
                 lS G+++ lal+ a+l ++   ++l++D+p + L+    +l+ + l ++l++++
  KIR63099.1 492 LSGGQRQRLALARAVLGRP---AVLVLDDPLSALDVhteALVeAALRRVLRDTT 542
                 6999999999999999999...************99775222244445555555 PP

>> ABC_membrane_3  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8   5.6e-05     0.091      85     181 ..     124     217 ..      29     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.6e-05
  ABC_membrane_3  85 vleqrqqdldtSkvaarlalsrelvdFlEkhlPtlitavvsivgavvmllvlefslglsallillllllllprFarrnerlnikLNnelEkevkl 179
                     + ++ q+++  S v++ l++ r + +F    l  l+ ++v+ v+ vv+l  l+  lgl++ +  + l l+  rF r+ ++   ++ ++      l
      KIR63099.1 124 FHDRWQTGQLLSRVTSDLSVIRRFLSF---GLLFLVLNLVTYVAVVVLLVRLHPTLGLLVAASAVPLFLISRRFGRYYHAASRRMQDQQGDVATL 215
                     467889999999999999999998888...56688************************999999999999******999999998887665555 PP

  ABC_membrane_3 180 ie 181
                     +e
      KIR63099.1 216 VE 217
                     55 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00016      0.26     112     208 ..     414     559 ..     237     566 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
                 EETTEEE-HHHHHHHHHCTT-STT.....................................................CS-HHHHHHHHHHHHHHHHCCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.....................................................xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 112 kingkevtkkevsellesagiske.....................................................lLSgGektLvalaLlfAiqkvk 157
                 +++g++v+  ++++l + +g+  e                                                     +LSgG+++ +ala         
  KIR63099.1 414 TLDGHDVRDLQLASLRRLVGVAFEeptlfsmsvwenltlgrpdadadevraalalaqadfayelpwglatrvgeqglTLSGGQRQRLALA----RAVLG 508
                 444444444444444444444444777777777777777777777777777777777777788888888888888889******965554....44556 PP

                 --SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 158 paplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadkl 208
                 + ++ +lD+  +aLD +  + v   l++   ++  + + +r  +++ ad++
  KIR63099.1 509 RPAVLVLDDPLSALDVHTEALVEAALRRVLRDTTALLVVHRPSTVALADRV 559
                 667889**********************9999999999*******999987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.25       8      41 ..     385     409 ..     379     517 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpe 41 
                 l+++G +G+GK+tll  + + +d          +
  KIR63099.1 385 LALVGATGVGKSTLLSLVPRLHDV---------S 409
                 799************999998854.........3 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.013        21       2      20 ..     385     403 ..     384     418 .. 0.83
   2 ?    4.9   0.0     0.013        22     114     160 ..     530     575 ..     481     580 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.013
                 EEEE--TTSSHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvl 20 
                 +++ G  GvGK+Tl++ v 
  KIR63099.1 385 LALVGATGVGKSTLLSLVP 403
                 5788**********99875 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.013
                 HHHHHHHHHTTTSEEEEE--SS--SHHHHHHHT-TT-EEEE--TTTT CS
    NTPase_1 114 fkeaveevLksekpvlavihrrkdlalveeirerkdvkvfevteenr 160
                 ++ a+++vL+  +  l v+hr+++ al +++   + +++  v  ++r
  KIR63099.1 530 VEAALRRVLRDTT-ALLVVHRPSTVALADRVALLERGRITAVGTHSR 575
                 4567888887655.78899***999******9999999999988776 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0029       4.7       2      18 ..     384     400 ..     383     406 .. 0.89
   2 ?    2.7   0.0     0.063     1e+02      35     133 ..     463     554 ..     441     574 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0029
                 CEEEEC-TTTCHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlq 18 
                 +++l G+ G+GK+tLl 
  KIR63099.1 384 TLALVGATGVGKSTLLS 400
                 789************96 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.063
                 SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE.....EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEE CS
       NACHT  35 klvFflslrelsrsgnarsladllfsqlpepaapvsevwavllelperlL.....lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvr 128
                 +  + l ++++  + +  +la+ + +q++ +++ +++    +l+l++ +L     l+lD+   l++ +      +++ l +  +r+ l  ++ ll+  r
  KIR63099.1 463 RAALALAQADFAYELPW-GLATRVGEQGLTLSGGQRQ----RLALARAVLgrpavLVLDD--PLSALDV-----HTEALVEAALRRVLRDTTALLVVHR 549
                 55555555555555444.7788888888888888888....8888888888888899984..4444333.....3667999999999999********* PP

                 CCCHH CS
       NACHT 129 pralr 133
                 p+++ 
  KIR63099.1 550 PSTVA 554
                 *9983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4370.54
//
Query:       KIR63100.1  [L=474]
Description: AraC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-35  119.7   1.4    1.4e-34  118.8   0.5    1.9  2  AlkA_N          AlkA N-terminal domain
    8.2e-29   99.4   7.8    1.6e-28   98.5   7.8    1.5  1  Ada_Zn_binding  Metal binding domain of Ada
    3.3e-17   62.5   1.3    8.2e-17   61.3   1.3    1.7  1  HTH_18          Helix-turn-helix domain
    7.5e-05   22.7   0.0       0.07   13.3   0.0    2.4  2  HTH_AraC        Bacterial regulatory helix-turn-helix protein
     0.0026   18.2   0.0     0.0067   16.9   0.0    1.7  1  HhH-GPD         HhH-GPD superfamily base excision DNA repair 


Domain annotation for each model (and alignments):
>> AlkA_N  AlkA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.5   5.3e+03      32      64 ..     114     146 ..     108     156 .. 0.73
   2 !  118.8   0.5     4e-38   1.4e-34       1     116 []     199     314 ..     199     314 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.5
      AlkA_N  32 edsygRtlrldgakGvvevrhepeksalkvrls 64 
                 e +++R lr + ++G ++++ +++++  ++ ++
  KIR63100.1 114 ERHLHRMLRAELGAGPLALARAQRAQTARILIE 146
                 556788888888888888888777766666555 PP

  == domain 2  score: 118.8 bits;  conditional E-value: 4e-38
      AlkA_N   1 tlrLayrpPydwaallaFlaaraiegvEavdedsygRtlrldgakGvvevrhepeksalkvrlslsdlraleaviarvrrllDLdadpeaieaaL..dp 97 
                 tlrLayrpP+++aall+Fla ra++gvE+v++++y+R lrl++++++v+++++  + +++++l+l+dlr+l++++ar+rrl+DLdadp+a++ +L  dp
  KIR63100.1 199 TLRLAYRPPLHAAALLDFLALRALPGVEEVRDGTYHRGLRLPHGAAEVALTPA--DGHVSATLRLADLRDLAPAVARCRRLFDLDADPAAVDGTLaaDP 295
                 69*****************************************8777777765..59****************************************** PP

      AlkA_N  98 llapevaarpGlRvPgavd 116
                 +lap vaa+pG+R+P+avd
  KIR63100.1 296 ALAPAVAAEPGVRLPRAVD 314
                 *****************97 PP

>> Ada_Zn_binding  Metal binding domain of Ada
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   7.8   4.3e-32   1.6e-28       2      65 .]       8      71 ..       7      71 .. 0.98

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 4.3e-32
                    HHHHHHHTSTTCCTTBEEEETTTTEEE-TT-SSS-S-SCCEEEESSHHHHHHTT-EEETTTTTS CS
  Ada_Zn_binding  2 rwqavlardaradgsFvyavkttgiyCrpsCparlPkrenveFfdtaaeAeaagfrpCkrcrPd 65
                    +++av +rd+r+dg F+++v++tgiyCrpsCpa +Pkr nv+Ff++aa+A++ag r+C+rcrPd
      KIR63100.1  8 CYRAVDSRDQRFDGWFYTGVTSTGIYCRPSCPATTPKRRNVRFFPSAAAAQSAGLRACRRCRPD 71
                    9**************************************************************7 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   1.3   2.3e-20   8.2e-17       1      79 [.     106     183 ..     106     185 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 2.3e-20
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyr 79 
                 la++lg+++r+L+r+++++lg  p +++r+ R + Ar  L+e+tgl +aeiA+a+GF++ ++F++  r+++   Ps+ r
  KIR63100.1 106 LATRLGYTERHLHRMLRAELGAGPLALARAQRAQTARI-LIETTGLGMAEIAFAAGFGSVRQFNDTVREVYAAAPSQLR 183
                 799***********************************.5599**********************************98 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0018       6.6      14      38 ..     106     130 ..     106     132 .. 0.90
   2 !   13.3   0.0   1.9e-05      0.07       2      41 ..     146     183 ..     145     183 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0018
                 HHHHTTSSHHHHHHHHHHHSSS-HH CS
    HTH_AraC  14 iAdelgfSrsyFsrlFkketGmtPs 38 
                 +A  lg+ +++++r +++e+G  P 
  KIR63100.1 106 LATRLGYTERHLHRMLRAELGAGPL 130
                 5889*****************9996 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.9e-05
                 HCCCSCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   2 renlstnltiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                 +   +t+l +++iA ++gf S ++F  + ++++   Psq r
  KIR63100.1 146 E---TTGLGMAEIAFAAGFgSVRQFNDTVREVYAAAPSQLR 183
                 5...788889**********************999999987 PP

>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.9e-06    0.0067       1     102 [.     320     458 ..     320     464 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.9e-06
                 HHHHHHTTS-HHHHHHHHHHHHHHHS.......HCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH.......................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
     HhH-GPD   1 vsailsqqtsderanriierlferfg.......fptpedladadeekLrelirelGfyrrKakyikelArilv.......................... 66 
                 v+a+++qq+s ++a +  +rl            fp +e+l+++++e +r           + + i+++Ar+ +                          
  KIR63100.1 320 VRAVATQQVSLASARTTLTRLLPPAAtdgglrgFPGAEELLALPDEAFRMP-------AARRETIRAAARAAAdgsldldpggdreeaarrllalpgig 411
                 7899*****************999777788888888888888888887665.......79*************************************** PP

                 ............S-SSS--TTSHHHHHHHHHHTTSSSSTTHHHHHHHH CS
                 ............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 ............gkpdvlivvDvhvrrilkrlrsikekktkkkvekkl 102
                             g pdv+   D+ vrr++  l++ ++ +++  + + +
  KIR63100.1 412 awtagyvamralGDPDVGLTTDLAVRRGAAALGLPHD-PSTLDAYAGR 458
                 ************99****************9999877.5555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3609.39
//
Query:       KIR63101.1  [L=390]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-30  104.3  24.5    6.6e-16   58.7  11.1    2.1  2  EamA           EamA-like transporter family
  ------ inclusion threshold ------
        9.5    5.2  11.0       0.99    8.4   4.8    1.9  2  Mg_trans_NIPA  Magnesium transporter NIPA


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   5.5   1.1e-17   9.7e-14       7     136 ..      11     134 ..       5     135 .. 0.91
   2 !   58.7  11.1   7.4e-20   6.6e-16       3     134 ..     145     278 ..     143     279 .. 0.91

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 1.1e-17
        EamA   7 allaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwlll.lllgllgtvlafllffyalkktsasnaslitslePvf 104
                   +a   w+++++++  ll    pl+ ++vr l ag+lll+++  + +         w +  + lg+l++ ++f l+fya  +++ ++a+++ + +P++
  KIR63101.1  11 TAAAPAAWGTTYLVTSELLPPDRPLWSAVVRALPAGLLLLAVTRRRPHGA-------WWWRaAALGALNIGAFFPLLFYAAYRLPGGTAAVLGAAQPLL 102
                 5678889********************************77665555544.......77766************************************* PP

        EamA 105 tlilsvlllgekltlkqllgivlillGvllil 136
                 ++ l+v  lge++    ll+++ + lGv l++
  KIR63101.1 103 VAALAVGALGERPRPPALLAALAAPLGVTLVV 134
                 ******************************97 PP

  == domain 2  score: 58.7 bits;  conditional E-value: 7.4e-20
        EamA   3 gillallaalfwaiyfvlskil..lrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslits 99 
                 g+   l+++  +a++ vl+++      v +l++t ++++++g+l  ++a+  eg+++  +  ++l ++ lgl+gt++a+ l+f +  +++ +++s++ +
  KIR63101.1 145 GVAAGLTGTAAMAAGLVLTRRWgrPPGVGTLAATSWQLTAGGLLIAPLAVAVEGPPPPVDGPALLGYAWLGLVGTAAAYALWFRGAARLPLTQVSVLGA 243
                 77888999999999999998773455678889999*********************77777779999******************************** PP

        EamA 100 lePvftlilsvlllgekltlkqllgivlillGvll 134
                 l+P+ ++ l++l lg+ l+ +ql+g++l+++++++
  KIR63101.1 244 LSPLTAAALGWLALGQALSATQLAGFALAIAATVV 278
                 *******************************9875 PP

>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.4     0.039   3.5e+02      66     121 ..      81     135 ..      58     143 .. 0.73
   2 ?    8.4   4.8   0.00011      0.99      53     118 ..     213     278 ..     207     283 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.039
  Mg_trans_NIPA  66 nfaayafaPatLvtPLGalsvivsavlasllLkekLkllgllGcllailGstvlvi 121
                     +aay + P    + LGa   ++ a la+  L e+ +   ll  l a lG t++v+
     KIR63101.1  81 FYAAYRL-PGGTAAVLGAAQPLLVAALAVGALGERPRPPALLAALAAPLGVTLVVL 135
                    3456654.666788999999999999*******************99999999886 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00011
  Mg_trans_NIPA  53 waGlltmavGeaanfaayafaPatLvtPLGalsvivsavlasllLkekLkllgllGcllailGstv 118
                    w Gl+ +a+  a  f   a  P t v+ LGals +++a l  l L + L +++l G  lai+ ++v
     KIR63101.1 213 WLGLVGTAAAYALWFRGAARLPLTQVSVLGALSPLTAAALGWLALGQALSATQLAGFALAIAATVV 278
                    678888888888889999999****************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2626.65
//
Query:       KIR63102.1  [L=254]
Description: peptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-24   85.8   0.0    4.1e-24   85.4   0.0    1.1  1  Peptidase_S51  Peptidase family S51


Domain annotation for each model (and alignments):
>> Peptidase_S51  Peptidase family S51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.0   2.3e-28   4.1e-24      29     202 ..      42     209 ..      29     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 2.3e-28
                    TT-EEEEE-GGGGG-S--HHHHHHHHHHHHTT-EEEE--TTTS-H.HHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTT-EEEEET CS
  Peptidase_S51  29 sekkvlFiPtAsvsgdddeyvekvrkaleklglevdeLelskdpe.eeieeklleadviyvgGGntfrLlkllketgldkllreavqqglvyiGvS 123
                      ++++++ +A  +gd+d+ +++v  a++   +  ++L l++ p+ ++++  ll++dv+ vgGG   +L+++++ +gld++l e +q+g+v++GvS
     KIR63102.1  42 PAPRLCYLGQA--VGDRDSSIAAVHAAFAGTRFRASHLALFPMPNvDDVRAHLLAQDVLWVGGGSVANLCAVWRVHGLDEILHECWQAGVVLAGVS 135
                    5799*******..****************************9876156************************************************ PP

                    HHHHTTSSB-GGGTTTS-GGG-S---B----SSSEEETTT...T-TTSHHHHHHHHHH-----EEE--TTEEEEEETTE CS
  Peptidase_S51 124 AGaivagesiettsysdspikapesfeaLgLvkfqivPHylghkeeereerlaefvesneekpvigldegtalliegdk 202
                    AG+i++   ++t+s+   +  +    ++Lg ++     Hy  + ee+r++ ++ +v+     +  + d+g  l+++g++
     KIR63102.1 136 AGSICWHLGGATDSFGPRL--R-GFTDGLGWLPYGNGVHY--DSEEQRRPLMHALVADGTLPTSHCTDDGVGLVYRGTR 209
                    **************44444..2.4679*************..**************99999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1862.70
//
Query:       KIR63103.1  [L=361]
Description: GTP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-39  133.0   0.0    6.4e-39  132.0   0.0    1.5  1  YchF-GTPase_C  Protein of unknown function (DUF933)
    4.7e-22   78.2   0.0    3.7e-21   75.3   0.0    2.1  2  MMR_HSR1       50S ribosome-binding GTPase
    1.9e-08   34.0   0.0    3.9e-08   33.0   0.0    1.5  1  FeoB_N         Ferrous iron transport protein B
    0.00021   21.3   0.3    0.00098   19.1   0.3    2.1  1  TGS            TGS domain
     0.0051   16.9   0.0       0.33   11.0   0.0    2.3  2  Dynamin_N      Dynamin family
  ------ inclusion threshold ------
      0.079   11.9   0.0       0.15   11.0   0.0    1.4  1  MeaB           Methylmalonyl Co-A mutase-associated GTPase Me
       0.08   13.5   0.0       0.17   12.5   0.0    1.6  1  AAA_18         AAA domain
       0.15   12.3   0.2         11    6.3   0.0    2.5  2  AAA_22         AAA domain
       0.18   11.3   0.1       0.59    9.5   0.0    1.9  3  SRPRB          Signal recognition particle receptor beta subu


Domain annotation for each model (and alignments):
>> YchF-GTPase_C  Protein of unknown function (DUF933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   0.0   3.2e-42   6.4e-39       1      84 []     277     360 ..     277     360 .. 0.99

  Alignments for each domain:
  == domain 1  score: 132.0 bits;  conditional E-value: 3.2e-42
  YchF-GTPase_C   1 LitffTaGekevraWtikkgttapqaAgviHsDfekgFiraevikyedlvelgseaaakeagklrlegkdyvvqdgDiilfkfN 84 
                    L+t++TaG+ke+raWt+  g+tap+aAgviHsDf++gFi+aev++y+dlv++gs+aaak+agk+r+egk+yv+qdgD+++f+fN
     KIR63103.1 277 LQTYLTAGPKEARAWTVPVGATAPEAAGVIHSDFQRGFIKAEVVSYDDLVAAGSMAAAKAAGKVRIEGKEYVMQDGDVVEFRFN 360
                    89*********************************************************************************9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.0   1.9e-24   3.7e-21       2      87 ..       5     116 ..       4     142 .. 0.80
   2 ?    1.0   0.0      0.22   4.4e+02      46     113 ..     130     207 ..     117     208 .. 0.58

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 1.9e-24
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE.................EEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke.................ielvDtpGliegaseekglgkaflalee.adlillv 82 
                 ++ivG pNvGKStL+nalt++ + ++++p++T+++n g v l +++                 + +vD++Gl+ gas+++g g+afla+++ a++i+ v
  KIR63103.1   5 IGIVGLPNVGKSTLFNALTKNDVLAANYPFATIEPNVGVVGLPDERltklaeifssqkvlpapVSFVDIAGLVRGASKGQGRGNAFLANIRdASAICQV 103
                 89************************************9984433355666666666677777********999**************98889****** PP

                 EETT........T CS
    MMR_HSR1  83 vdas........e 87 
                 v+a         +
  KIR63103.1 104 VRAFsdpnvvhvD 116
                 *987554444432 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.22
                 EEEEEEECGGCSS....HHHHHHHHHHHHHHHHC.TSEEEEEEETT.....TTCSHHHHHHHHHHHHH....TTSEEEEEEE CS
    MMR_HSR1  46 keielvDtpGlie....gaseekglgkaflalee.adlillvvdas.....eeklkpldeeleellee....akkplilvln 113
                 +e++l+D+   +e    + ++e +l+k+ +a    a+ ++ v+d           ++ + +le l+ e    ++kp+++v+n
  KIR63103.1 130 TELILADLQT-LEkalpRLEKEAKLRKDRAAAVTaAKQAVEVLDGGttlyaG--AAAAKIDLEHLR-ElhllTTKPFLYVFN 207
                 4667777777.33233234455567777776665468888888855555431..333334444442.335557888888887 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0     2e-11   3.9e-08       2      46 ..       4      48 ..       3      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 2e-11
                EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg 46
                t+ +vG pnvGk+tlfnalt+ +   +N+p  t+e + g + l +
  KIR63103.1  4 TIGIVGLPNVGKSTLFNALTKNDVLAANYPFATIEPNVGVVGLPD 48
                6899*******************************9999887655 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.3   4.9e-07   0.00098      10      57 ..     290     356 ..     282     358 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.9e-07
                 EEEEETTB-HHHHHHHHSTTHHHHEEEEEECS...................EEEETTSBB-SSEEEE CS
         TGS  10 vpdlprgatveDfAykIhrslakkfiyAlVnG...................qrvgldhvLedgdvve 57 
                 + ++p gat+ ++A  Ih+++ + fi A V                     ++ g ++v++dgdvve
  KIR63103.1 290 AWTVPVGATAPEAAGVIHSDFQRGFIKAEVVSyddlvaagsmaaakaagkvRIEGKEYVMQDGDVVE 356
                 45599*********************************************999*************9 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00017      0.33       1      27 [.       5      31 ..       5      42 .. 0.85
   2 ?    3.6   0.0     0.032        63      91     138 ..      56     106 ..      43     118 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
                EEEEEBTTTTHHHHHHHHHTS--S--- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprg 27
                i +vG  + GKS++ naL++ d+l   
  KIR63103.1  5 IGIVGLPNVGKSTLFNALTKNDVLAAN 31
                7899999****************9765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.032
                 EEEEEEETTS-SEEEEE---B-SSSGTTS...HHHHHHHSTTEEEEEEEET CS
   Dynamin_N  91 illkilsllvkgltlvDlPGldsvnkrdq...elvkeyikkadiilavtsa 138
                 ++++ ++ l   +++vD  Gl + + + q   +     i++a++i  v+ a
  KIR63103.1  56 EIFSSQKVLPAPVSFVDIAGLVRGASKGQgrgNAFLANIRDASAICQVVRA 106
                 667777888899***************999999999999999999999987 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.4e-05      0.15      30      51 ..       3      24 ..       1      33 [. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.4e-05
                EEEEEEE-TTSSHHHHHHHHHH CS
        MeaB 30 qvvGltGvPGaGkstlvealgl 51
                  +G+ G+P +Gkstl +al+ 
  KIR63103.1  3 LTIGIVGLPNVGKSTLFNALTK 24
                679****************986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.4e-05      0.17       1      21 [.       5      25 ..       5      55 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.4e-05
      AAA_18  1 IlltGtpGvGKttlakeLskr 21
                I++ G p vGK+tl ++L k 
  KIR63103.1  5 IGIVGLPNVGKSTLFNALTKN 25
                89****************875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0056        11      10      33 ..       7      30 ..       3      64 .. 0.70
   2 ?    3.1   0.2     0.052     1e+02      92     117 ..     203     227 ..     137     239 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0056
      AAA_22 10 vtGesGtGKTtllrrlleqldeea 33
                ++G + +GK+tl + l+++++ +a
  KIR63103.1  7 IVGLPNVGKSTLFNALTKNDVLAA 30
                89***************9986443 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.052
      AAA_22  92 ielliiDEaqhlrseealeeLrslln 117
                   ++ +DEa+   ++e l eLr l+ 
  KIR63103.1 203 LYVFNVDEAELA-NAEFLDELRALVA 227
                 467889******.9********9986 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0003      0.59       6      29 ..       5      28 ..       2      43 .. 0.83
   2 ?   -3.3   0.0       2.5     5e+03     137     157 ..     147     166 ..     139     176 .. 0.73
   3 ?   -3.3   0.0       2.5     5e+03      47      60 ..     236     249 ..     229     263 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0003
                EEEE-STTSSHHHHHHHHHHSS-- CS
       SRPRB  6 vllvGlsdsGKTslftrLttdsvk 29
                + +vGl + GK +lf+ Lt++ v 
  KIR63103.1  5 IGIVGLPNVGKSTLFNALTKNDVL 28
                569****************98664 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.5
                 HHHHHHHHHHCHHHHHH---- CS
       SRPRB 137 LEkElnkiierrskalkelde 157
                 LEkE  k+++ r++a++++ +
  KIR63103.1 147 LEKE-AKLRKDRAAAVTAAKQ 166
                 7888.4688888888777644 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.5
                 GGTT-SEEEETT-G CS
       SRPRB  47 kgskltliDfPGhe 60 
                  + + +l+D+P +e
  KIR63103.1 236 AKIESELVDLPEEE 249
                 45667888888654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2608.20
//
Query:       KIR63104.1  [L=175]
Description: deaminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-21   76.4   0.0    6.2e-21   75.1   0.0    1.5  1  RibD_C    RibD C-terminal domain


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   3.5e-25   6.2e-21       2     187 ..       3     161 ..       2     167 .. 0.86

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 3.5e-25
                 EEEEEEEEETTSBSSCTTSSGCTSS-HH..HHHHHHHHHHTSSEEEEEHHHHHHHT--SS--SSCHSCHH.HTT.GSS-EEEEEETTS-S-TTSHHHHS CS
      RibD_C   2 yvilklavSlDGklaaaggeskwitgee..aradvhelraeadailvGrgtvladnpsltvrwvkkreae.adaearqpvrvVvdstlrvpldakvltd 97 
                 ++ + +++SlDG++a +gg+++w+t+     +  +++l a ++ail G gt+ + +p   +r  +k   e a + + + + +V++++   +++  +   
  KIR63104.1   3 KLLYSATASLDGYIAGPGGDMSWLTEHLtgENPTAERLLAGVGAILAGNGTFGGGDP---NRGTDK---EgAFGGQYHGPVFVLTHRPPAEPPPGITFV 95 
                 678899*******************999878889***********************...444444...324455599*********987777776665 PP

                 SS-EEEEESSCSCHHHHHHCCESE-HHHHHHHHHHT.T--EEEEEETHHHHHHHHHTTT-SEEEEEEESCE--TTSBCSSSSST-SSEEEE CS
      RibD_C  98 daptlvatteeadkekveklkvrvdlkelleeLker.girsllveGGatLagsllraglvDelrlyiaPkllGgagktlfdgegfkalklk 187
                 +                       dl++++++ +e+ g r + v+ Ga++a++ +ragl+De+ +++aP+llG+ g ++fd+ g +a++l+
  KIR63104.1  96 G-----------------------DLPSAVAQAREAaGDRYVNVL-GADVARQCVRAGLLDEVLIFFAPVLLGA-GVRIFDDPGGPAVRLT 161
                 5.......................6***********677777777.6***************************.********99886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       158  (0.00881254); expected 358.6 (0.02)
Passed bias filter:                      134  (0.00747392); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1427.66
//
Query:       KIR63105.1  [L=208]
Description: phosphoglycerate mutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-31  109.9   0.0    1.4e-31  109.7   0.0    1.0  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)
  ------ inclusion threshold ------
       0.07   12.5   0.0      0.095   12.0   0.0    1.1  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7   0.0   1.6e-35   1.4e-31       1     184 [.       5     190 ..       5     202 .. 0.92

  Alignments for each domain:
  == domain 1  score: 109.7 bits;  conditional E-value: 1.6e-35
                 EEEEE---BTTB--....TT----.B-HHHHHHHHHHHHHHTT....S---EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGT.T-B.HHH CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvp.LteeGreqAealaerlag....epidaiysSplkRarqTaeliaealglpveldegLrEidfGdwe.glttaei 93 
                 l++vRHGe+ +++e +++g +    Lt+ G++qA++la+rl++     ++ a+ysS l+R+++Ta +iaealg+++  d gL  ++   +  gl+ta+ 
  KIR63105.1   5 LLFVRHGESVHKVEDVVGGPGGCRgLTDSGHQQARRLADRLRDelavAGPVAVYSSVLRRTVETAWPIAEALGVSPVPDCGLCAWHTPPYAdGLPTAQF 103
                 689*************999877666***************9996655666677***********************************8877******* PP

                 HHH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS CS
  His_Phos_1  94 aeeypeeleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglpleelrrleldnaslsvlefdeg 184
                 + e++ e +  +r  +    +g Es+++++ Rv++a+ ++a+rh+g+t+++V H  ++ a  ++l   pl ++ ++e+++as+++++ d++
  KIR63105.1 104 QTEHAVEGGGVFRPFE----EGNESWAELVVRVSRAIMDIAHRHWGGTAVLVGHTETVEASFHALAAQPLFRAFDMEVAPASITEWTTDGD 190
                 ***9999999888888....58***************************************************************998875 PP

>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.1e-05     0.095      70     129 ..      26      76 ..       6      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.1e-05
                 STTS.B-HHHHHHHHHHHHHHHHHCHTCCHTTSS--TTEEEEEESSHHHHHHHHHHHHHH CS
  His_Phos_2  70 kwggelthaGrkqaeelGrqfrqrYplgLlrlhltykdlkirassegRviaSAaafakGl 129
                 +  g lt +G++qa++l +++r         +      + +++s  +R++++A   a++l
  KIR63105.1  26 GCRG-LTDSGHQQARRLADRLRDELA----VA----GPVAVYSSVLRRTVETAWPIAEAL 76 
                 4556.999999999999999998776....33....68***************8887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1822.38
//
Query:       KIR63106.1  [L=111]
Description: glyoxalase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0002   22.1   0.8    0.00025   21.8   0.8    1.1  1  Glyoxalase_6  Glyoxalase-like domain
     0.0058   16.8   0.1      0.049   13.8   0.1    2.0  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
  ------ inclusion threshold ------
       0.19   11.7   0.0        0.4   10.6   0.0    1.5  1  Glyoxalase_2  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.8   4.1e-08   0.00025       3     106 ..       8     106 ..       6     107 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.1e-08
  Glyoxalase_6   3 vldaadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpepaknrvHldlavedldaevarlvalGArvlreprdgthgr..vla 97 
                   vl +ad++a a+++a+ lg+++++e+  +++      +a+++  + + +    a+    l l v+d+da +    a+G+ ++ e  d++  r   l+
    KIR63106.1   8 VLRVADAEATAGWYAR-LGFRKQWEHRFAPELPRYVSIARGGIEVHLSEHAGDARPGTSLYLYVDDVDAVA---AACGGVEVAER-DWG--RefQLT 97 
                   67899*******9987.79999999955666666666788888888888888555578999******7766...899**999664.444..445*** PP

  Glyoxalase_6  98 DPeGneFcv 106
                   DP+Gn+ +v
    KIR63106.1  98 DPDGNRIRV 106
                   *****9876 PP

>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   8.2e-06     0.049       6      91 ..       8      80 ..       4     106 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.2e-06
                EEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHH CS
  Glyoxalase  6 allvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkal 91
                +l+v+d+e+++ +Y++ LGf+  ++  +         +++ + +g ie+ l e +++a+++          + + ++dv+ v++a+
  KIR63106.1  8 VLRVADAEATAGWYAR-LGFRKQWEHRF----APELPRYVSIARGGIEVHLSEHAGDARPGT--------SLYLYVDDVDAVAAAC 80
                489*************.*********94....333346788999999999999999999999........7999999999999887 PP

>> Glyoxalase_2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   6.7e-05       0.4      58     114 ..      59     107 ..      46     109 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.7e-05
                   S--SS-EEEEEES-HHHHHHHH..GGGS-EEEEEEE-TTS-EEEEEE-TT--EEEEE CS
  Glyoxalase_2  58 eqsnnfeLyFevedvdaflqklkeaeniellhelkekpWgqrvirfyDpDkhiiEig 114
                     +    Ly  v+dvda+       +     +e+ e+ Wg r +++ DpD++ i +g
    KIR63106.1  59 DARPGTSLYLYVDDVDAVAAAC---GG----VEVAERDWG-REFQLTDPDGNRIRVG 107
                   5666788999999999998887...43....457899***.5699*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 839.50
//
Query:       KIR63107.1  [L=297]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-06   26.1   0.3    0.00044   19.6   0.3    2.2  2  Hydrolase_4    Serine aminopeptidase, S33
    2.3e-05   24.2   0.0     0.0023   17.6   0.0    2.2  1  Abhydrolase_1  alpha/beta hydrolase fold
     0.0057   16.0   0.2       0.07   12.4   0.3    2.3  2  LIP            Secretory lipase


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3   7.4e-08   0.00044      19     109 ..      42     127 ..      22     155 .. 0.83
   2 !    4.4   0.0    0.0033        20     188     218 ..     218     248 ..     214     268 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 7.4e-08
  Hydrolase_4  19 ryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaP 109
                   y++la+ L  +G+av+ +D r     +   gh  ++ d  +D+ a+v+ ++++ ++ p+ l+G S G+  a l++  +pd va l+l++ 
   KIR63107.1  42 CYEHLARLLPGAGVAVLRFDRR-----PRVDGHDVPLADQAADAIAAVDVLRRHVGDVPVGLWGLSQGAWAAPLAAGLRPDLVAFLVLVSG 127
                  69******************98.....4455555599********************************************9998887653 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0033
  Hydrolase_4 188 akitlPllllhGeaDkvvdpeasrelyerlg 218
                  a+++ P+ll++G+ D  ++ ++s ++ +r++
   KIR63107.1 218 ARVSCPVLLFYGATDAWIPIDDSVAAWRRAT 248
                  57899*************9999977666654 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.8e-07    0.0023      55     236 ..      76     247 ..      26     270 .. 0.57

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.8e-07
                    SHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCH CS
  Abhydrolase_1  55 gtasvaddldrildalgddkltlvGhSmGGmialayaaeyperVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaa 150
                    + a+  + +d ++ + gd ++ l+G S+G   a  +a + p+ V+ lvl+++     s  + + q +++  ++++++   +   ++   l++  aa
     KIR63107.1  76 QAADAIAAVDVLRRHVGDVPVGLWGLSQGAWAAPLAAGLRPDLVAFLVLVSG-----SGVSPAVQMRYGTAEQLRRN---GYGDADLAELGRVRAA 163
                    445566777888****************************************.....44444444444444444333...3333333334444444 PP

                    HHHHHH....HHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCH.HHHHHHHHC CS
  Abhydrolase_1 151 leqrhr....lvdalkfpdkskrfpssgsdnasslatgalksieqwpttdsaklllrlrelknvlaptlvisgtsDplvpp.kaledlaql 236
                    +e ++r       a   +  ++r+    + + + l +       +w + d++++      +  v++p+l+++g++D  +p+ ++   ++++
     KIR63107.1 164 TEAYLRgdldRATA---QAAVDRAAARPWFPLVHLPRALPDQPGTWRDMDFDPVPV----FARVSCPVLLFYGATDAWIPIdDSVAAWRRA 247
                    44443300002111...333333333444444444444444444444444444333....4446888888888888888887776666666 PP

>> LIP  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.3   1.2e-05      0.07      69      95 ..      92     118 ..      64     134 .. 0.80
   2 ?    0.6   0.0     0.046   2.8e+02     216     236 ..     222     242 ..     218     253 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.2e-05
         LIP  69 sdakvalwGYSgGslAsawAaelqpeY 95 
                  d++v+lwG S+G+ A+  Aa l p+ 
  KIR63107.1  92 GDVPVGLWGLSQGAWAAPLAAGLRPDL 118
                 489******************999975 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.046
         LIP 216 iPvlvyhgvidelipikdakk 236
                  Pvl++ g +d  ipi d+ +
  KIR63107.1 222 CPVLLFYGATDAWIPIDDSVA 242
                 7***************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2137.25
//
Query:       KIR63108.1  [L=234]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-23   81.1   0.0      1e-22   80.5   0.0    1.2  1  DUF218    DUF218 domain


Domain annotation for each model (and alignments):
>> DUF218  DUF218 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   5.8e-27     1e-22       3     106 ..      63     186 ..      61     211 .. 0.81

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 5.8e-27
      DUF218   3 ivVLGaal.......pllaeRldeaaelyrag..k.iivsGggadedvseaeamaeylrelgvpeeailledrsrnTeenarfskellkersillVTsa 91 
                  +VLG+++       p l++Rl+ a +l+ ag  + +++sG++ + d+ e  am+++l+++gvp+e+i+l+ ++ +T+++++++k++++ +++ +VT+ 
  KIR63108.1  63 ALVLGTKVhpdgtpsPFLTARLEIARRLFVAGkvRaVLLSGDNMNADYDEPTAMRRWLLDNGVPAEKIVLDYAGSDTYDSCARAKRIFGVERATVVTQT 161
                 689**777777788899***************6527******8889******************99**********************6569******* PP

      DUF218  92 fHmpRalllfrkag..........a 106
                 fH+pRa++++r++g          a
  KIR63108.1 162 FHLPRAVAVCRRLGvdasgvgdetA 186
                 *************855333333221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1662.73
//
Query:       KIR63109.1  [L=89]
Description: hypothetical protein TK50_19655 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.012   14.9   0.1      0.014   14.7   0.1    1.1  1  CcmH      Cytochrome C biogenesis protein
      0.035   14.2   1.0      0.042   14.0   1.0    1.1  1  DUF3180   Protein of unknown function (DUF3180)
      0.036   13.9   0.1      0.044   13.6   0.1    1.2  1  DUF2157   Predicted membrane protein (DUF2157)
       0.06   13.2   0.0      0.063   13.1   0.0    1.0  1  TMEM51    Transmembrane protein 51
      0.064   12.4   0.0      0.064   12.4   0.0    1.0  1  ArsP_1    Predicted permease


Domain annotation for each model (and alignments):
>> CcmH  Cytochrome C biogenesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1     4e-06     0.014      93     140 ..      19      65 ..      12      70 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4e-06
                 XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        CcmH  93 kastll.LWlgPllllllgllvlllllrrrkkkkaeeeelsaeeearle 140
                 +++tl+ L+ + l+l++ ++lv++++ rrr+++ +++    a e+ar +
  KIR63109.1  19 DMTTLMvLFGATLALIVSAFLVVAWRDRRRQSSPEDS--AAAREAARTQ 65 
                 5566651555666666666777777777777666655..5666666655 PP

>> DUF3180  Protein of unknown function (DUF3180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.0   1.2e-05     0.042       9      55 ..       5      52 ..       2      72 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
     DUF3180  9 avagwllvrvsygslp.plpwlaavvllvlavvelvlAlqvrrrirgr 55
                a  ++ l rv+y++ + +l +l++++l+++  + lv+A++ rrr  + 
  KIR63109.1  5 ARSAAGLDRVAYRWDMtTLMVLFGATLALIVSAFLVVAWRDRRRQSSP 52
                55677888999999999***********************99999554 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.2e-05     0.044      54      95 ..      14      59 ..       5      78 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
     DUF2157 54 vAanWqglsrlvkfllllvllllslllgavlwrdr....rvpprlg 95
                vA+ W+  + +v f+  l+l++ ++l++a+  r+r    +++++ +
  KIR63109.1 14 VAYRWDMTTLMVLFGATLALIVSAFLVVAWRDRRRqsspEDSAAAR 59
                899**********************998544443346664444444 PP

>> TMEM51  Transmembrane protein 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.8e-05     0.063      62     112 ..      21      71 ..       7      84 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.8e-05
      TMEM51  62 svAyVLvGaGvalLlLs.icLgirdkkrarqeeeelaraqeslqeeeeeqee 112
                 +  +VL Ga +al++ + + ++ rd++r+++ e+  a+a+e+++++++  +e
  KIR63109.1  21 TTLMVLFGATLALIVSAfLVVAWRDRRRQSSPEDS-AAAREAARTQQRYAAE 71 
                 5569*****99998877355677998888866555.4444444444443333 PP

>> ArsP_1  Predicted permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.8e-05     0.064      99     147 ..       7      56 ..       1      83 [. 0.70

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.8e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
      ArsP_1  99 iaiiltlillgwqllvarivlalivaiviglvleylfkee.elekaarev 147
                  a+ l  ++ +w+++ + ++++ ++a++++  l++   ++ +++ ++   
  KIR63109.1   7 SAAGLDRVAYRWDMTTLMVLFGATLALIVSAFLVVAWRDRrRQSSPEDSA 56 
                 55666678899***************999888776655540454444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       915  (0.0510346); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 660.94
//
Query:       KIR63110.1  [L=294]
Description: dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-21   75.9   0.0      7e-21   75.0   0.0    1.4  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
      3e-10   40.6   0.3    1.2e-09   38.6   0.0    2.0  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    0.00075   19.6   0.0     0.0013   18.8   0.0    1.4  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
     0.0024   17.8   0.1     0.0049   16.8   0.1    1.5  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0027   17.4   0.0     0.0042   16.7   0.0    1.3  1  ApbA            Ketopantoate reductase PanE/ApbA
     0.0045   17.0   0.0     0.0084   16.1   0.0    1.5  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
     0.0059   16.0   0.0     0.0099   15.2   0.0    1.3  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   2.7e-24     7e-21       2     152 ..      12     160 ..      11     165 .. 0.94

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 2.7e-24
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE-S---HHHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdeviegllealkkgdilidgstsspedt 97 
                    ++++GlG MG+ +a  l++ag  ++v+nrt+e++  lva ga+aa +++++v+++ +v+t++ + + v++v+    +   +g++l+d++t+sp+++
     KIR63110.1  12 VAVLGLGPMGRALAASLVSAGVPTVVWNRTPERAAPLVALGATAAPTVADAVRACSLVVTCLIDPPTVRSVLAH--HDDWAGRTLVDVTTASPDAA 105
                    79**********************************************************************98..66789*************** PP

                    HHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEEE CS
  NAD_binding_2  98 relakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaigak 152
                    r la+ ++++g++++   +   +    +    ++  Gs+ af+++ p+l a+g +
     KIR63110.1 106 RGLAQWAAARGIDLVKGAILTPTPSIGTQAAGVLYCGSRPAFDACLPILAAFGGT 160
                    ***************99999888888777779******************99975 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   4.7e-13   1.2e-09       2      95 ..      12      98 ..      11     100 .. 0.90
   2 ?   -1.2   0.2       1.3   3.2e+03       6      22 ..     262     278 ..     258     289 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 4.7e-13
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-.S-HHHHHHHHHHCGHHHHTTSEEEEES CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvla.vkpedveevlselakdalkgklvisvl 95
                   ++++G G mg+ala  l++ag     +v   +r+pe+a+ l + lg+++ + + ++a++ +  vv + + p  v +vl+    d+++g+++++v+
     KIR63110.1 12 VAVLGLGPMGRALAASLVSAG--VPTVV-W-NRTPERAAPLVA-LGATAAP-TVADAVRACSLVVTClIDPPTVRSVLAHH--DDWAGRTLVDVT 98
                   89*******************..44555.4.9*********76.5789999.9*********99998569********999..99********98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.3
                    TTSHHHHHHHHHHHHTT CS
  F420_oxidored   6 GaGnmgealasgllaag 22 
                    Ga + ++a++ +++a+g
     KIR63110.1 262 GALRAAQAVIDRVIANG 278
                    77788999999999998 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     5e-07    0.0013      15      54 ..      12      50 ..       3      79 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5e-07
                  EEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHH CS
  Shikimate_DH 15 vlliGaGemaelvakhLlakgvkkvvvaNRtlerakelae 54
                  v ++G G m++ +a  L+++gv   vv NRt era+ l+ 
    KIR63110.1 12 VAVLGLGPMGRALAASLVSAGVP-TVVWNRTPERAAPLVA 50
                  89********************9.789********99875 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   1.9e-06    0.0049       2      36 ..      12      46 ..      11      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.9e-06
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseeale 36
                vav+G G mG+ +aa ++sag+++v+ ++++e+++
  KIR63110.1 12 VAVLGLGPMGRALAASLVSAGVPTVVWNRTPERAA 46
                9*************************999988765 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.6e-06    0.0042       1      41 [.      12      53 ..      12      64 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.6e-06
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGl 41
                +a+lG+G +G+ laa+L  ag + ++++r++ r++ l+  G 
  KIR63110.1 12 VAVLGLGPMGRALAASLVSAGVPTVVWNRTPeRAAPLVALGA 53
                69*****************************99888777665 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.3e-06    0.0084       2      35 ..      12      45 ..      11      72 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.3e-06
                    EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHH CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrlwvreeeli 35
                    +avlG G  G alA++l ++g ++++w r +e +
      KIR63110.1 12 VAVLGLGPMGRALAASLVSAGVPTVVWNRTPERA 45
                    9****************************99765 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.9e-06    0.0099      38      98 ..      11      72 ..       3      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.9e-06
                  EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC.SHHHHHHH-SEEEE- CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelv.sleellaesDivslh 98
                   v+++GlG +G+a+a  l + g+  ++++r++++ +   +lg++ + ++ ++++ +  v+ +
    KIR63110.1 11 PVAVLGLGPMGRALAASLVSAGVPTVVWNRTPERAAPLVALGATAApTVADAVRACSLVVTC 72
                  589******************************99989999997766888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2289.59
//
Query:       KIR63111.1  [L=126]
Description: MerR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-20   71.5   0.0    8.5e-20   70.6   0.0    1.4  1  MerR_1         MerR HTH family regulatory protein
    1.6e-16   59.7   6.7    2.7e-16   59.0   5.2    2.1  2  MerR           MerR family regulatory protein
    3.6e-06   27.4   0.1    5.6e-06   26.8   0.1    1.3  1  MerR-DNA-bind  MerR, DNA binding
  ------ inclusion threshold ------
      0.012   15.7   0.8       0.03   14.5   0.8    1.7  1  AbiEi_4        Transcriptional regulator, AbiEi antitoxin
       0.25   11.3   4.7       0.82    9.6   0.1    3.3  3  MarR_2         MarR family


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   2.4e-23   8.5e-20       1      67 [.       1      67 [.       1      68 [. 0.98

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 2.4e-23
                EEHHHHHHHHTS-HHHHHHHHHHTT-S-EE-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XXX CS
      MerR_1  1 ysigevakilgvtthtlrywekegllkpkrteggrryYtdedierLklikyLlkrGltlkgikklln 67
                ++ige+a+++gv+t+ lry+e++gll+p+r++ g+r Y+d+ + ++++i+ Ll++Gl  + i+++l 
  KIR63111.1  1 MRIGELARRTGVSTRALRYYEEQGLLRPERRSSGYRDYGDTAVSTVRHIRLLLSAGLGTAVIAEILP 67
                89*************************************************************9985 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   5.2   7.6e-20   2.7e-16       1      38 []       2      38 ..       2      38 .. 0.98
   2 ?   -0.7   0.0      0.34   1.2e+03      13      18 ..      43      48 ..      40      61 .. 0.68

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 7.6e-20
                EHHHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSSEEE CS
        MerR  1 tIgevAeltGvsprtLRyYEreGLipppeRtegGyRlY 38
                +Ige+A++tGvs+r+LRyYE++GL+ +peR+++GyR Y
  KIR63111.1  2 RIGELARRTGVSTRALRYYEEQGLL-RPERRSSGYRDY 38
                7************************.**********99 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.34
                HHHHHH CS
        MerR 13 prtLRy 18
                ++t+R+
  KIR63111.1 43 VSTVRH 48
                566665 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   1.6e-09   5.6e-06       2      65 .]      44     111 ..      43     111 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.6e-09
                    HHHHHHHHHHHTT--HHHHHHHH.HHHHS...TTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind   2 eRLkfIrrarrlGFsLdeIrelL.alydd...rappcqdvrallarklaeleeriaeLqalraeLaal 65 
                    + ++ Ir + ++G+  + I+e+L  ++dd    ap+c+++++ la+ + ++ + i++L+a r+ L+al
     KIR63111.1  44 STVRHIRLLLSAGLGTAVIAEILpCVPDDttvLAPTCPELLDGLAEERTRITAAIERLAAARDILDAL 111
                    67889******************999***9877******************************99986 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.8   8.4e-06      0.03      15      42 ..       2      30 ..       1      32 [. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.4e-06
     AbiEi_4 15 ttrelea.aGispsalrrLvrkGwLvrlr 42
                +  el++  G+s++alr++ ++G+L   r
  KIR63111.1  2 RIGELARrTGVSTRALRYYEEQGLLRPER 30
                67899999****************98655 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00023      0.82      23      54 ..       2      29 ..       1      36 [. 0.84
   2 ?   -1.3   0.1      0.58   2.1e+03      39      50 ..      46      57 ..      43      57 .. 0.82
   3 ?    1.5   0.1     0.075   2.7e+02      34      48 ..      90     104 ..      77     115 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00023
                EHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2 23 tvgelarrlglsksavsrilkrLvaaGLverr 54
                ++gelarr+g+s    +r+l+  +++GL++ +
  KIR63111.1  2 RIGELARRTGVS----TRALRYYEEQGLLRPE 29
                789********9....999*********9655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.58
                HHHHHHHHHTTS CS
      MarR_2 39 srilkrLvaaGL 50
                 r+++ L +aGL
  KIR63111.1 46 VRHIRLLLSAGL 57
                688999999998 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.075
                 SHHHHHHHHHHHHHT CS
      MarR_2  34 sksavsrilkrLvaa 48 
                 ++ +++ +++rL aa
  KIR63111.1  90 ERTRITAAIERLAAA 104
                 678899999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 906.73
//
Query:       KIR63112.1  [L=120]
Description: hypothetical protein TK50_19670 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-08   32.9   0.0    6.6e-08   32.7   0.0    1.2  1  bPH_1     Bacterial PH domain
    1.5e-07   31.7   0.1    1.7e-07   31.5   0.1    1.2  1  bPH_3     Bacterial PH domain
    8.2e-05   22.5   0.0     0.0001   22.2   0.0    1.1  1  GRAM      GRAM domain
    9.3e-05   22.6   0.3      0.001   19.2   0.2    2.1  2  bPH_2     Bacterial PH domain


Domain annotation for each model (and alignments):
>> bPH_1  Bacterial PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.5e-11   6.6e-08      16     121 ..       9     118 ..       1     119 [. 0.79

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.5e-11
                 CCCHHHHGCGCGCT--EEEEEE-T...SEEEEEESSEEEEEE---SSS--EEEEEEETTTEEEEEE....EEESTTSSEEEEEEEETTTCCEEEEECGC CS
       bPH_1  16 kklekelgellidgEkilfafkli...rDevvFTnkrlilvdkqgvtgkKkeyksipyssIsevsi....EtagtfDldaeLkiwisgeeepikvefkk 107
                 k+  ++++  l+ gE+i++++  +   +  + +T++r+i+ d  + +gk+  ++sipys+I++vs+       g f +   + i++ g+++ ++vef++
  KIR63112.1   9 KEQFQQIQSGLLTGEQIIAVYDAVgtgTGFIGLTDRRVIIQD-RSFVGKRYAITSIPYSKITSVSVvsnkSWGGEFFSTGSIAIHV-GTHT-YEVEFRG 104
                 4555677788999********998333456778*******99.5799*******************66554557777788899999.7777.8899988 PP

                 CCHHHHHHHHHHHH CS
       bPH_1 108 kedikelykaLaei 121
                  ++  ++++++ ++
  KIR63112.1 105 AQKSHHVHNVILHY 118
                 88888888887665 PP

>> bPH_3  Bacterial PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.1   3.8e-11   1.7e-07      12      79 ..      29     101 ..       7     115 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 3.8e-11
       bPH_3  12 kgqinakldkpglivvTnkRiifldpkmfgg.kdfeeipYksIksvdlkkgl.......lgakitletsgktitid 79 
                 + ++    +++g+i +T++R+i+ d  + g+ + +++ipY +I+sv++  +            i ++ + +t++++
  KIR63112.1  29 YDAV---GTGTGFIGLTDRRVIIQDRSFVGKrYAITSIPYSKITSVSVVSNKswggeffSTGSIAIHVGTHTYEVE 101
                 3333...489*****************99999999***********997776677776544556666677776664 PP

>> GRAM  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.3e-08    0.0001       6     108 ..      11     118 ..       7     120 .] 0.78

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.3e-08
                 HS--....--TT--EEEEEEEEEESS.SEEEEEEEEESSEEEEEE-ST.T---E.EEEEGGGEEEEEE........-TT-TT-EEEEESS-..EEEEE- CS
        GRAM   6 kfke....llpeEkllatykCyllrdggpvqGrlyltnyrlcFrskpl.gsskk.vvlpladikriek....stsaanllengiqvetsskdlelaFag 94 
                 +f++    ll +E+++a y++      g+  G + lt+ r++ ++ ++ g  +    +p+++i+++++    s ++  +++++i + ++++  e++F+g
  KIR63112.1  11 QFQQiqsgLLTGEQIIAVYDAV-----GTGTGFIGLTDRRVIIQDRSFvGKRYAiTSIPYSKITSVSVvsnkSWGGEFFSTGSIAIHVGTHTYEVEFRG 104
                 44444447*********99943.....8899*************99884566557778*****998874443666777888888888888766****** PP

                 -TTHHHHHHHHHHH CS
        GRAM  95 fvtrdeaiefieel 108
                  ++++ ++ +i+++
  KIR63112.1 105 AQKSHHVHNVILHY 118
                 ******99999876 PP

>> bPH_2  Bacterial PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.078   3.5e+02       2      32 ..       2      32 ..       1      34 [. 0.84
   2 !   19.2   0.2   2.3e-07     0.001       8      72 ..      41     107 ..      34     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.078
       bPH_2  2 rattytitdrrvvvrsGillrktldiplerI 32
                +++ty  ++++ +++sG+l+ ++++  ++ +
  KIR63112.1  2 ANATYDRKEQFQQIQSGLLTGEQIIAVYDAV 32
                6889999999999******999998888765 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 2.3e-07
       bPH_2   8 itdrrvvvrs.Gillrkt..ldiplerIqavsl..eqsllqrrlglgtivietaggsraevelplrsvpd 72 
                 +tdrrv+++   +++++   + ip+++I++vs+  ++s+ + ++ +g+i+i+++  +   +e+++r   +
  KIR63112.1  41 LTDRRVIIQDrSFVGKRYaiTSIPYSKITSVSVvsNKSWGGEFFSTGSIAIHVGTHT---YEVEFRGAQK 107
                 79***999983555555433579********994457899*************9999...7888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 837.33
//
Query:       KIR63113.1  [L=259]
Description: methyltransferase type 11 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-15   57.3   0.0    3.5e-15   56.5   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    2.2e-15   57.0   0.0    3.7e-15   56.3   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    2.7e-12   46.8   0.0    1.1e-11   44.8   0.0    1.8  2  Methyltransf_23  Methyltransferase domain
    1.4e-10   41.8   0.0    2.4e-10   41.0   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    1.2e-08   34.9   0.0    2.3e-08   34.0   0.0    1.5  2  Methyltransf_31  Methyltransferase domain
    5.1e-06   26.2   0.0    7.3e-06   25.7   0.0    1.1  1  NodS             Nodulation protein S (NodS)
    6.6e-05   22.4   0.0    9.5e-05   21.9   0.0    1.2  1  TehB             Tellurite resistance protein TehB
    0.00035   20.2   0.0    0.00069   19.2   0.0    1.5  1  MTS              Methyltransferase small domain
     0.0051   16.2   0.0     0.0086   15.4   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
       0.01   15.5   0.0      0.015   14.9   0.0    1.2  1  TPMT             Thiopurine S-methyltransferase (TPMT)
  ------ inclusion threshold ------
      0.014   14.8   0.3      0.035   13.5   0.1    1.7  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.016   15.2   0.0      0.022   14.7   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
       0.08   12.5   0.0       0.13   11.8   0.0    1.3  1  MetW             Methionine biosynthesis protein MetW
       0.27   10.7   0.0        1.5    8.3   0.0    1.9  2  Methyltransf_4   Putative methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   2.7e-18   3.5e-15       1      97 []      50     142 ..      50     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 2.7e-18
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEEST.GGG.SSHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssga.lhh.lsdedlekalkeiar 91 
                      vLdlGcGtGrlt ala+++  + vtgvD++  +l+aar+r     +  v++v+g   +lp ++  fD+ v++ +  ++ ++d++++++l+ +ar
       KIR63113.1  50 VLDLGCGTGRLTVALAAAG--HPVTGVDPAGPALAAARRRPG---AdLVTWVEGTSASLPRAA--FDVAVLTSHvAQVfVTDDEWARTLADLAR 136
                      9*****************5..9*******************5...448**********99765..9998887776666699************* PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                      +L pgG
       KIR63113.1 137 ALGPGG 142
                      *****9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   2.9e-18   3.7e-15       1      96 []      51     146 ..      51     146 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 2.9e-18
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-....CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv....edpekalkeiaRvLkp 90 
                      Ld+GcGtGrl+ ala +g+ v+gvD++  +l++a+++   +   v++v+++  +  ++ + fD+ v+++ +  v    ++++++l+ +aR L p
       KIR63113.1  51 LDLGCGTGRLTVALAAAGHPVTGVDPAGPALAAARRRPGADL--VTWVEGTSAS--LPRAAFDVAVLTSHVAQVfvtdDEWARTLADLARALGP 140
                      8******************************99988888876..99*****998..66788**9988886666669999*************** PP

                      EEEEEE CS
  Methyltransf_11  91 gGllvi 96 
                      gG+l++
       KIR63113.1 141 GGRLAF 146
                      ***986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   8.6e-15   1.1e-11      21     154 ..      45     179 ..      35     184 .. 0.81
   2 ?   -1.2   0.0       1.2   1.5e+03     142     162 ..     209     229 ..     191     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 8.6e-15
  Methyltransf_23  21 raggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.....kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvp...d.ppellrqi 105
                       +++rvLd+GcGtG+l+  l++ g+ vtgvD+   a + a+        +++        a+ p + fd++vl+     v    d ++++l+ +
       KIR63113.1  45 TPPARVLDLGCGTGRLTVALAAAGHPVTGVDPAGPALAAARrrpgaDLVTWVEGTS----ASLPRAAFDVAVLTSHVAQVFvtdDeWARTLADL 134
                      5789****************************998888887655543333333333....677999*****999766665445435******** PP

  Methyltransf_23 106 atllkpgGylllseplaslkedrllldwlylvpagrhisffsarslkel 154
                      a+ l pgG+l +      ++++r+++ w + + + r++++ + r+++ +
       KIR63113.1 135 ARALGPGGRLAFDSR---DPAARAWERWNAVDSR-RVVRLPDGREVRAW 179
                      **********99888...5899999999998888.99999998888766 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
  Methyltransf_23 142 hisffsarslkelleeaGlev 162
                       ++f  + +l+  +e+aG+ v
       KIR63113.1 209 RLRFRGEAELRASVEAAGFAV 229
                      568888999**********87 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   1.9e-13   2.4e-10       1      99 []      51     144 ..      51     144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 1.9e-13
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvas.nvlhhl...kdirevldnir 90 
                      L++GcGtG+l+ al+++  +  +tgvD+   a+ +a+++    +   +++ve +  +l     +++fD+ v+  +v +++   ++++++l+ ++
       KIR63113.1  51 LDLGCGTGRLTVALAAA--GHPVTGVDPAGPAL-AAARRRPGADL--VTWVEGTSASLP----RAAFDVAVLTsHVAQVFvtdDEWARTLADLA 135
                      8****************..**************.66666555554..455555555443....35****76554999999**999********* PP

  Methyltransf_12  91 klLkpgGrl 99 
                      ++L pgGrl
       KIR63113.1 136 RALGPGGRL 144
                      *******97 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.8e-11   2.3e-08       5     113 ..      48     150 ..      45     193 .. 0.81
   2 ?   -3.0   0.0       4.4   5.7e+03      10      22 ..     241     253 ..     241     256 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.8e-11
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsn....evlnaladpdkil 94 
                       rvlDlGCGtG+lt +la     +  v+G+D    a+  Ar +    g d v+  +g   +l+    ++ fD+ +      +v+ +  + + +l
       KIR63113.1  48 ARVLDLGCGTGRLTVALAAA---GHPVTGVDPAGPALAAARRR---PGADLVTWVEGTSASLP----RAAFDVAVLTshvaQVFVTDDEWARTL 131
                      58****************33...345****************5...99***************....479***777733444448888888999 PP

  Methyltransf_31  95 eeiervlkpggilliedpr 113
                        + r+l pgg+l+ ++ +
       KIR63113.1 132 ADLARALGPGGRLAFDSRD 150
                      9************998877 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.4
  Methyltransf_31  10 lGCGtGeltfela 22 
                      +G+G+Gel+ ++ 
       KIR63113.1 241 VGTGAGELVVVAR 253
                      79****9987765 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   5.7e-09   7.3e-06      44     156 ..      47     157 ..      37     172 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 5.7e-09
        NodS  44 iadalevGcaaGalterlapyckrltvvdvveeaiararervkesshiswivsdvqqfstdekfdlivvae.vl.yyiedvaelraavrnlvsllapdg 140
                  a +l++Gc +G lt+ la   + +t vd    a+a ar+r      ++w++     +   + fd+ v +  v   +++d +    ++ +l + l p+g
  KIR63113.1  47 PARVLDLGCGTGRLTVALAAAGHPVTGVDPAGPALAAARRRPGA-DLVTWVEGTSASL-PRAAFDVAVLTShVAqVFVTDDE-WARTLADLARALGPGG 142
                 5789************************************9987.8899999877776.6789**99987524424556655.555699********** PP

        NodS 141 qlvfGsardavcrrwG 156
                 +l f s rd   r w 
  KIR63113.1 143 RLAFDS-RDPAARAWE 157
                 ****98.777778775 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   7.4e-08   9.5e-05      30     115 ..      46     129 ..      33     145 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 7.4e-08
                 -S-EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-TTEEEEE--GGG----S-EEEEEEESSGGGS-GGGHHH CS
        TehB  30 kpgkvldlgcgqgrnslylsllgydvtawdknensiafleeikekenlknistalydineaklderydfilstvvlmfleaerips 115
                  p++vldlgcg gr ++ l++ g+ vt +d    ++a  ++    + ++ ++ ++  +  a +d     + s v  +f+  +  ++
  KIR63113.1  46 PPARVLDLGCGTGRLTVALAAAGHPVTGVDPAGPALAAARRRPGADLVTWVEGTSASLPRAAFDV--AVLTSHVAQVFVTDDEWAR 129
                 599***************************98888887777766666666666666666666654..3455555555555555555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.4e-07   0.00069      33      78 ..      48      91 ..      40     146 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.4e-07
                SEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHT CS
         MTS 33 gkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenlean 78
                 +vlDlGcG+G l++ala++     vt vd    Al++a++   a 
  KIR63113.1 48 ARVLDLGCGTGRLTVALAAAGHP--VTGVDPAGPALAAARRRPGAD 91
                57****************97776..9**********9999865544 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.7e-06    0.0086      44     150 ..      43     145 ..      38     149 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.7e-06
                      -S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-G..GG-S-HH.. CS
  Ubie_methyltran  44 avkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGl..rnvtDkl.. 133
                      a+ ++a+vlD+ +Gtg l+++l+ +      v+++D     L  ++++    g   + ++ + +  Lp    +fDv  ++  +    vtD +  
       KIR63113.1  43 AGTPPARVLDLGCGTGRLTVALAAAG---HPVTGVDPAGPALAAARRR---PGADLVTWVEGTSASLPRA--AFDVAVLTSHVaqVFVTDDEwa 128
                      667899***************98654...469999*999999999876...68889***********986..6666555444400456776422 PP

                      HHHHHHHHHEEEEEEEE CS
  Ubie_methyltran 134 kaLkeayrvlkpGGrlv 150
                      ++L ++ r l pGGrl 
       KIR63113.1 129 RTLADLARALGPGGRLA 145
                      789***********985 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.2e-05     0.015      33      75 ..      42      84 ..      36     105 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
                .T-S--EEEEEET-TT-HHHHHH-BTTEEEEEE-S-HHHHHHH CS
        TPMT 33 lkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvekf 75
                ++ ++ +rvl  +CG +   v+lA+ g+ v Gv+ +  A++++
  KIR63113.1 42 SAGTPPARVLDLGCGTGRLTVALAAAGHPVTGVDPAGPALAAA 84
                5678999***************************999998875 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   2.8e-05     0.035     163     201 ..      48      85 ..      42     113 .. 0.88
   2 ?   -1.8   0.0       1.3   1.6e+03     168     184 ..     241     257 ..     240     258 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.8e-05
        PrmA 163 eevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvak 201
                 ++vlD+G+G+G L++a a  g+  v++vD    A+ +a+
  KIR63113.1  48 ARVLDLGCGTGRLTVALAAAGH-PVTGVDPAGPALAAAR 85 
                 68**************998885.899***9999999887 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
        PrmA 168 vGtGSGiLaiaaakLga 184
                 vGtG+G L ++a +L a
  KIR63113.1 241 VGTGAGELVVVARRLSA 257
                 8***********99986 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.7e-05     0.022      22      67 ..      43      84 ..      28     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.7e-05
  Methyltransf_32 22 kesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelveka 67
                     + +++ +v+D+G+G g L+ +la      ++ v+g+d      ++a
       KIR63113.1 43 AGTPPARVLDLGCGTGRLTVALAA----AGHPVTGVDPAGPALAAA 84
                     5577899*****************....69******9766555555 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0001      0.13      13      84 ..      46     116 ..      42     133 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0001
        MetW  13 pgsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqgdldkdlenfedksfdyvvlsqt 84 
                 p +rvldlGcG G l   l+   +    G++    ++a++  +  + +   ++   +  +  +fd++vl+  
  KIR63113.1  46 PPARVLDLGCGTGRLTVALAA-AGHPVTGVDPAGPALAAARRRPGADLVTWVEGTSASLPRAAFDVAVLTSH 116
                 5689***********998865.56666777777777777776654545556666677777777777777655 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0012       1.5       5      22 ..      50      67 ..      47      74 .. 0.89
   2 ?   -0.4   0.0      0.54   6.9e+02      99     117 ..     130     148 ..     128     172 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0012
                    EEEET-TTSHHHHHHHHH CS
  Methyltransf_4  5 vleiGcGkGeflvalAkk 22
                    vl++GcG G+++valA +
      KIR63113.1 50 VLDLGCGTGRLTVALAAA 67
                    79*************975 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.54
                     HHHHHHHHEEEEEEEEEEE CS
  Methyltransf_4  99 llkelarvLkkgGvlelaT 117
                     +l++lar+L +gG l + +
      KIR63113.1 130 TLADLARALGPGGRLAFDS 148
                     68999********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1818.52
//
Query:       KIR63114.1  [L=102]
Description: pterin dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-06   26.1   0.0    8.1e-06   25.9   0.0    1.0  1  Pterin_4a  Pterin 4 alpha carbinolamine dehydratase


Domain annotation for each model (and alignments):
>> Pterin_4a  Pterin 4 alpha carbinolamine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   4.5e-10   8.1e-06       7      90 ..      13      94 ..       7      95 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 4.5e-10
   Pterin_4a  7 eiqkllaelpgWrleeaeelerefkfkdfeeaiafvnrvaalaeeenHhpdilvsynkvtvrltThdaggltenDfklAakide 90
                 ++++l+ l gW++ e+e+++r+  ++d ++a a+++rv+ +a++    p+i+ + ++ ++r+   d + l+e  + lAa+i++
  KIR63114.1 13 YLSDALTLLTGWTR-EGEQIRRTLVIDDTQHA-ALTERVKVVADALHLRPEISRRDDRTQIRVGHGDGAPLSEGEVLLAARIED 94
                5667775559***9.7889*******999999.9******************************999999************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 815.05
//
Query:       KIR63115.1  [L=146]
Description: DNA mismatch repair protein MutT [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-15   56.8   0.2    2.7e-15   56.6   0.2    1.1  1  NUDIX     NUDIX domain
    9.6e-09   35.2   0.0    1.3e-08   34.8   0.0    1.1  1  NUDIX_4   NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.2     3e-19   2.7e-15       4     119 ..      19     127 ..      16     143 .. 0.72

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 3e-19
                 EEEEEEEEETTSEEEEEEESSSSTTT...EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEE.EEECSGCS CS
       NUDIX   4 ravgvvllnekgevLlvrrskkpfpg...WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygd.eheilyvfl.eevegele 97 
                 + vg+ ++ +  +vL   rs +p+     We+PgGkvepgE+  +A++RE++EE+ +++e  + +gr               +++l v++ + ++g+ +
  KIR63115.1  19 VVVGAAIIADG-RVLACARS-APPEVagmWEFPGGKVEPGESETAALVRECAEELAVRVEIGDRVGRNVR-----M---AhGRSVLKVYAaRLLHGD-R 106
                 66777766655.5*******.4444468*************888*************9999999993322.....2...245677777773444444.5 PP

                 STSTTTEEEEEEEEHHHH.HHHH CS
       NUDIX  98 pndenevsevrwvpleel.lkek 119
                 p+   e+s++rw++ +el    +
  KIR63115.1 107 PK-ALEHSALRWLSAAELdT-VT 127
                 54.57999*********942.22 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   1.4e-12   1.3e-08       3     103 ..      23     131 ..      21     138 .. 0.75

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.4e-12
                 EEEEECTEEEEEE--TTSSSTT-EE-SEEE.-TTS-HHHHHH...HHHHS-EEEEEEE.EEEEEEETTEEEEEEEEEEEEE.S..---....EEEEEEG CS
     NUDIX_4   3 llirddgrvllekRpekgllggLwefPgge.eegeeleeala...reelgieveelep.gtvkHvftHfrltltvylvrveegeeapa....elrwvtp 92 
                 ++i+ dgrvl   R +    +g+wefPgg+ e+ge++++al+   +eel++ ve  ++ g+    + H r  l+vy++r+ +g++++a    +lrw+++
  KIR63115.1  23 AAIIADGRVLACARSAPPEVAGMWEFPGGKvEPGESETAALVrecAEELAVRVEIGDRvGR-NVRMAHGRSVLKVYAARLLHGDRPKAlehsALRWLSA 120
                 568888**********9*************9999986666665556678866553444444.5679999999999988665454444477899****** PP

                 GGGGGS---CC CS
     NUDIX_4  93 eeleeyalpta 103
                 +el+++    a
  KIR63115.1 121 AELDTVTWLPA 131
                 ***98765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1151.38
//
Query:       KIR63116.1  [L=354]
Description: fumarate reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-27   94.2   0.0    8.4e-27   93.3   0.0    1.4  1  Fer2_3    2Fe-2S iron-sulfur cluster binding domain
    1.3e-14   54.4   5.7    1.3e-14   54.4   5.7    2.3  2  Fer4_8    4Fe-4S dicluster domain
      4e-05   23.8   3.2       0.12   12.5   0.3    2.5  2  Fer4_18   4Fe-4S dicluster domain
    8.4e-05   23.0   6.1    8.4e-05   23.0   6.1    2.1  2  Fer4_17   4Fe-4S dicluster domain
    0.00051   19.9   0.7    0.00051   19.9   0.7    2.0  2  Fer2      2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
      0.032   14.8   5.8      0.032   14.8   5.8    2.6  3  Fer4_7    4Fe-4S dicluster domain
      0.077   13.2  11.3       0.23   11.7   0.4    3.2  3  Fer4_9    4Fe-4S dicluster domain
      0.087   12.9   0.4      0.087   12.9   0.4    2.0  2  Fer2_4    2Fe-2S iron-sulfur cluster binding domain
        4.9    7.3  17.8       0.21   11.7   9.6    2.6  3  Fer4_10   4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.0   4.2e-30   8.4e-27       2     105 ..       7     105 ..       6     109 .. 0.94

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 4.2e-30
      Fer2_3   2 lkvkRfdprrdrgkqkvqeyeveaeeedtvldaLlkikeevdptlafrasCregiCGscavainGkptlaCtatikdlakqkseieleplpkfpvirDL 100
                 ++++R d+    +   +q+y+ve++e++ vld++++++ +  p la+r++C++g CGsc+++inG p+l C ++++++++ + +++++pl++fp+irDL
  KIR63116.1   7 FRIWRGDE----SGGDLQDYQVEVNEGEVVLDVIHRLQATDAPDLACRWNCKAGKCGSCSMEINGMPKLGCMTRMSTFEEAE-TVTVTPLRTFPIIRDL 100
                 67888777....5788***************************************************************987.7*************** PP

      Fer2_3 101 vvDid 105
                 v+D++
  KIR63116.1 101 VTDVS 105
                 ***86 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.73   1.5e+03      49      58 ..      51      62 ..       5      65 .. 0.72
   2 !   54.4   5.7   6.4e-18   1.3e-14       1      65 []     140     217 ..     140     217 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.73
      Fer4_8 49 wsC..ttcgaCt 58
                w+C    cg+C+
  KIR63116.1 51 WNCkaGKCGSCS 62
                445333455554 PP

  == domain 2  score: 54.4 bits;  conditional E-value: 6.4e-18
      Fer4_8   1 elekCieCgaCqsaCpvlrr...................tkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCpvgi 65 
                 e++kCieC++Cq+ C+v+r+                    ++h+lda+ +++e++q eq+      l+ C+++++CtevCp++i
  KIR63116.1 140 EFRKCIECFLCQNVCHVVRDheenkqafsgprffiraaeLDMHPLDAKTDRKEYAQAEQG------LGFCNITKCCTEVCPEHI 217
                 589**********************************9888*************999999......****************98 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.2   0.00015       0.3      46      76 ..     129     159 ..     101     167 .. 0.80
   2 !   12.5   0.3   6.2e-05      0.12      46      79 ..     188     221 ..     174     226 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
     Fer4_18  46 alkekeerkekgagdcidcescvkvcPtgid 76 
                  +++++ +++++  +ci+c  c +vc +  d
  KIR63116.1 129 RMQQVDVERSQEFRKCIECFLCQNVCHVVRD 159
                 5678888899999999999999999987655 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 6.2e-05
     Fer4_18  46 alkekeerkekgagdcidcescvkvcPtgidirk 79 
                 + +++  ++e+g g c   + c +vcP +i i +
  KIR63116.1 188 TDRKEYAQAEQGLGFCNITKCCTEVCPEHIKITD 221
                 344445567889999****************987 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.9         2     4e+03      45      49 ..      57      61 ..      41      80 .. 0.74
   2 !   23.0   6.1   4.2e-08   8.4e-05       1      60 [.     143     217 ..     143     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2
     Fer4_17 45 lCieC 49
                +C +C
  KIR63116.1 57 KCGSC 61
                33333 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 4.2e-08
     Fer4_17   1 rCiqCgyClpeCpsyeaydnepk......kllraakl.........glleeaekeekaslCieCgeCerkCPqgl 60 
                 +Ci+C  C ++C   ++++++++       ++raa+l          ++e+a++e+  + C+  + C+++CP+++
  KIR63116.1 143 KCIECFLCQNVCHVVRDHEENKQafsgprFFIRAAELdmhpldaktDRKEYAQAEQGLGFCNITKCCTEVCPEHI 217
                 6****************999866444332466666668899998866788888899*****************98 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.7   2.6e-07   0.00051       7      75 ..      21      75 ..      18      86 .. 0.74
   2 ?   -2.2   0.3         2     4e+03      42      52 ..     153     163 ..     149     212 .. 0.60

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.6e-07
                EEEEEEETTTHBHHHHHH....HTTTTTSTTSSSSSSSSTTEEEEEESCECTTSSSSTHHHHHTTEEEEGGGS CS
        Fer2  7 evevevadgettlldaae....enggidipysCggggCgtClvevlegevqsdetelegeeldegklrlaCqt 75
                +++vev++ge +l  + +    ++++++ +++C++g+Cg+C  e++            g ++      l C+t
  KIR63116.1 21 DYQVEVNEGEVVLDVIHRlqatDAPDLACRWNCKAGKCGSCSMEIN------------GMPK------LGCMT 75
                578999999995555555777668899999**************99............3332......44444 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2
                 TTEEEEEESCE CS
        Fer2  42 tClvevlegev 52 
                 +C+v  +++e+
  KIR63116.1 153 VCHVVRDHEEN 163
                 57764443332 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.3      0.93   1.8e+03      37      44 ..      57      61 ..      36      94 .. 0.76
   2 ?    9.0   3.2    0.0011       2.1      34      49 ..     140     155 ..     102     158 .. 0.69
   3 ?   14.8   5.8   1.6e-05     0.032       1      50 [.     143     215 ..     143     217 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.93
      Fer4_7 37 kClgCgaC 44
                kC   g+C
  KIR63116.1 57 KC---GSC 61
                33...333 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0011
      Fer4_7  34 dpekClgCgaCvavCP 49 
                 + +kC+ C  C++vC 
  KIR63116.1 140 EFRKCIECFLCQNVCH 155
                 3568999999999996 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 1.6e-05
      Fer4_7   1 rCigCgaCvaaC....................pvkaielde...eenekgtekveidpekClgCgaCvavCPt 50 
                 +Ci+C  C+++C                     +  +++++   +++ k+ +++e     C  ++ C +vCP 
  KIR63116.1 143 KCIECFLCQNVChvvrdheenkqafsgprffiRAAELDMHPldaKTDRKEYAQAEQGLGFCNITKCCTEVCPE 215
                 7***********8888888877777774444322222222211133334445556666679999********6 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.6      0.17   3.3e+02      33      42 ..      44      61 ..      20      79 .. 0.71
   2 ?   11.7   0.4   0.00011      0.23      22      47 ..     129     155 ..     117     168 .. 0.70
   3 ?    5.9   0.3     0.007        14       6      22 ..     207     223 ..     184     234 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.17
      Fer4_9 33 e......eaC..igCgaC 42
                +      ++C   +Cg+C
  KIR63116.1 44 ApdlacrWNCkaGKCGSC 61
                244455567743347777 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
      Fer4_9  22 aerkarlraase.eaCigCgaCveaCp 47 
                   + + +++ +e  +Ci+C  C ++C 
  KIR63116.1 129 RMQQVDVERSQEfRKCIECFLCQNVCH 155
                 444444444444678999999999995 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.007
      Fer4_9   6 gaCveaCpagvvvedaa 22 
                 + C+e+Cp ++ + d+a
  KIR63116.1 207 KCCTEVCPEHIKITDNA 223
                 33777777777777665 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   4.3e-05     0.087      11      70 ..      22      76 ..      18      87 .. 0.81
   2 ?   -2.7   0.4       3.3   6.5e+03      41      54 ..     137     150 ..     130     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.3e-05
      Fer2_4 11 kevtvpeGdtvasAllangv.dvprsckygrprgelcaggeCrnClVevegepnvracstp 70
                 +v+v eG+ v++++ + ++ d p +          c  g+C  C +e++g p++  c+t+
  KIR63116.1 22 YQVEVNEGEVVLDVIHRLQAtDAPDLACR-----WNCKAGKCGSCSMEINGMPKL-GCMTR 76
                589999*******9999998358865444.....58*****************65.67776 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.3
      Fer2_4  41 prgelcaggeCrnC 54 
                 +++e+    eC+ C
  KIR63116.1 137 RSQEFRKCIECFLC 150
                 56778888888888 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   1.3       1.2   2.3e+03      43      51 ..      51      61 ..      39      64 .. 0.70
   2 ?   11.7   9.6   0.00011      0.21       6      56 .]     141     214 ..     136     214 .. 0.94
   3 ?    4.5   2.2     0.019        38      12      27 ..     206     221 ..     200     237 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.2
     Fer4_10 43 ekCtg..cgaC 51
                ++C +  cg+C
  KIR63116.1 51 WNCKAgkCGSC 61
                66666667777 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
     Fer4_10   6 ddtCirCgkCvkaCPadl.........................tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                   +Ci+C  C+++C  ++                         +  +ak  ++e ++ + +++ C     C+e+CP
  KIR63116.1 141 FRKCIECFLCQNVC--HVvrdheenkqafsgprffiraaeldmHPLDAKTDRKEYAQAEQGLGFCNITKCCTEVCP 214
                 579***********..8889**********************999999999999999999***************9 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.019
     Fer4_10  12 CgkCvkaCPadltsvg 27 
                  + C+++CP +++  +
  KIR63116.1 206 TKCCTEVCPEHIKITD 221
                 4569999*99874333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2426.02
//
Query:       KIR63117.1  [L=638]
Description: succinate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-93  311.5   1.4    1.2e-92  311.1   1.4    1.2  1  FAD_binding_2   FAD binding domain
    1.6e-23   83.1   0.0    3.5e-23   82.0   0.0    1.5  1  Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
      2e-06   27.3   0.8    1.3e-05   24.6   0.1    2.4  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00014   21.3   0.1    0.00024   20.6   0.1    1.4  1  FAD_oxidored    FAD dependent oxidoreductase
    0.00033   20.4   6.3      0.021   14.4   6.3    3.1  1  DAO             FAD dependent oxidoreductase
    0.00048   19.0   0.5    0.00048   19.0   0.5    2.1  3  HI0933_like     HI0933-like protein
  ------ inclusion threshold ------
      0.029   13.6   0.6      0.045   13.0   0.6    1.3  1  FAD_binding_3   FAD binding domain
      0.036   13.3   2.6      0.048   12.9   1.0    1.9  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.038   13.1   9.6      0.014   14.5   4.4    2.5  3  GIDA            Glucose inhibited division protein A
      0.052   12.8   0.2      0.052   12.8   0.2    2.6  3  Thi4            Thi4 family
       0.13   11.5   0.7       0.22   10.8   0.7    1.3  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
        3.2    8.1   6.3        6.9    7.0   2.1    3.3  3  NAD_binding_8   NAD(P)-binding Rossmann-like domain


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.1   1.4   8.4e-96   1.2e-92       1     417 []      13     434 ..      13     434 .. 0.96

  Alignments for each domain:
  == domain 1  score: 311.1 bits;  conditional E-value: 8.4e-96
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    Dv+ViG+G+AGL+AA+ea+ aG+k+a+++k    + +t++++Gg++a+  ++    + +d+++ h++dt+ ++  l++ +++e+ ++++p+ + eL
     KIR63117.1  13 DVVVIGAGGAGLRAAIEARLAGKKTAIISKSLFGKAHTVMAEGGAAAAM-GNV---NSRDNWQVHFRDTMRGGKFLNNFRMAELHAKESPQRIWEL 104
                    9*******************************9888*****99999998.554...457************************************* PP

                    HHTT----BCCTSSB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCT.............EEEEESEEEEEEEECTTEEEEEEE CS
  FAD_binding_2  97 eelgvpfsrtedgpvdvrelGglsatartlhdaadarretlvtghallarlvesarkag.............vdfqerteadeLivedgrvtGavv 179
                    e +g+ f+rt+dg++ +r +Gg+  + r +h ++d+      tg +l+ +l +++ +++             ++++++t ++eL+ ++++v Ga  
     KIR63117.1 105 ETYGALFDRTKDGKISQRNFGGHEYP-RLAH-VGDR------TGLELIRTLQQKIVSLQqedkaefgsydarIKVFAETTITELLLDGEKVAGAFG 192
                    **************************.****.****......***********998888888999*********************999******* PP

                    EETTTTCEEEEEESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTBB--THHHHTT- CS
  FAD_binding_2 180 enpesgrevrirakavvlatgGfgrallkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGg 275
                      +esg+   ++a avvlatgG+gr           ++ t+n    tGdg+alalraga l +  me++qfhPt++v + + +giL+te +rg+Gg
     KIR63117.1 193 YYRESGEFILFEAPAVVLATGGVGR----------SYKVTSNSWEYTGDGHALALRAGATLIN--MEFLQFHPTGMVWPPSVKGILVTESVRGDGG 276
                    *99999999****************..........*************************999..************55555677*********** PP

                    EEE-TTSSBTH................................GGGS-HHHHHHHHH.HHHHTTTS..CCBEEEE-TT.SSHHHHHHHSHHHHHHH CS
  FAD_binding_2 276 ilvdkdGrrFm................................nelasrdvvsrailekeiaeggs..eanvyldashgldaegleatleaineea 337
                    il ++dG+rFm                                 el +rd+v+rai   e++ g++  +  vyld++++l+ae ++++l+ +++++
     KIR63117.1 277 ILKNSDGKRFMfdyvpdvfrkqyadneaeadrwykdpdnnrrpPELLPRDEVARAIN-SEVKAGRGtpAGGVYLDIASRLPAEEIRRRLPSMYHQF 371
                    *******************************************9*************.77777777697799************************ PP

                    HHCCT......S-TTTSEEE.......EEEEEEEES-EEEBETTSBESTTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 338 angldkdfgrgidpadrpipgpfyavkvvpaqhytmgGvetdengrvldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                    ++ +d      +d++++p+        v p++hy mgGve+d+++ +   +  ++ GL+AaGev  gg+hg nrlgGnsl
     KIR63117.1 372 KELAD------VDITKEPME-------VGPTCHYVMGGVEVDPDSGA---AYGTVRGLFAAGEVS-GGMHGSNRLGGNSL 434
                    *****......******999.......******************99...8889***********.************98 PP

>> Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   2.4e-26   3.5e-23       2     117 ..     490     602 ..     489     611 .. 0.92

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 2.4e-26
                     HHHHHHHHHHSSSSB-HHHHHHHHHHHHHHHHHHTTB--S---SSS-HHHHHHHHHHHHHHHHHHHHHHHHH--S-BTTBEBTTS-SEETTT-SE CS
  Succ_DH_flav_C   2 keLgkimqkkvgvfRteegLkealkelkelrerlknvkvtdkskvaNqelvealelanllelAeaiaksAlaRkESrGaHaredfperdDenwlk 96 
                     ++L+++m + vg+ R+e +L++al +l+elrer+ +v+ ++ ++++N  +  al l+n+l ++e++ak+Al+R+ESrG+H+redfp   D +w++
      KIR63117.1 490 QDLQAVMGDLVGIIRREGELADALVRLAELRERVAKVSAAG-GRRYNPGWHLALDLRNMLVVSECTAKAALERQESRGGHTREDFP-AMDPKWRR 582
                     78*********************************9*9976.778*****************************************.8899**** PP

                     EEEE...TT-SS-EEEEEE-- CS
  Succ_DH_flav_C  97 htlasldaakeeveleyepve 117
                     + l+ +  + ++v+l+ +p+ 
      KIR63117.1 583 VNLV-CALDGDTVRLTHKPLP 602
                     ***9.6667778999888875 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   8.8e-09   1.3e-05       1     110 [.      12     215 ..      12     236 .. 0.61
   2 ?   -0.0   0.0      0.28   4.1e+02     256     280 ..     395     422 ..     391     430 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.8e-09
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHC.HHHHHHHHHHHHH........................................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx........................................ RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllsk.allgvaedaeias........................................ 57 
                  +dvvviG+G AGl+aa++++ ag k++++ ++  +   + ++++  +++++++ + +                                         
   KIR63117.1  12 YDVVVIGAGGAGLRAAIEARLAGKKTAII-SKSLFGKAHTVMAEgGAAAAMGNVNSRDnwqvhfrdtmrggkflnnfrmaelhakespqriweletyg 108
                  69***************************.55544444444433222222222222224445667777777777777777777777777777777777 PP

                  ...................................................HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC.......TCEEE CS
                  ...................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxx RF
  Pyr_redox_2  58 ...................................................evvkklnqgielllgeevvkidpgkkkvklekkke.......gdeek 97 
                                                                      ++ ++ + i+++++++++++  + +kv              g+   
   KIR63117.1 109 alfdrtkdgkisqrnfggheyprlahvgdrtglelirtlqqkivslqqedkAEFGSYDARIKVFAETTITELLLDGEKVAG----AfgyyresGEFIL 202
                  777777777777777777777777777777777544444444444444444344444444444444444444444444444....1345553333333 PP

                  EEESEEEE---EE CS
                  xxxxxxxxxxxxx RF
  Pyr_redox_2  98 iaydklvlAtGss 110
                  +++ ++vlAtG+ 
   KIR63117.1 203 FEAPAVVLATGGV 215
                  4446777777764 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.28
                  TEEE--TTS..BE.SSTTEEE-GGGCTE CS
                  xxxxxxxxx..xx.xxxxxxxxxxxxxx RF
  Pyr_redox_2 256 ggivvdefl..rt.nvpgiyaiGDvagg 280
                  gg++vd+ +  +  +v g++a+G v gg
   KIR63117.1 395 GGVEVDPDSgaAYgTVRGLFAAGEVSGG 422
                  778888888543336**********944 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   1.6e-07   0.00024       1      31 [.      13      43 ..      13     121 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.6e-07
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveer 31
                  DvvV+G+g aG+ AAi A  aG+k+++++++
    KIR63117.1 13 DVVVIGAGGAGLRAAIEARLAGKKTAIISKS 43
                  9***************************986 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   6.3   1.4e-05     0.021       1     141 [.      13     346 ..      13     352 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-05
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS.SGGGSSEEEEESSS....STHHSTH...................HHHHHHH.HHHHHHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiags.gaSgrnsgllhsgl....rylpeas...................elarlsl.ealeelrele 72 
                 dvv+iG+G +Gl +A e+  +g  ++++ k+  +g+ ++  + +g  ++      r                         ++a+l + e+ +++ ele
  KIR63117.1  13 DVVVIGAGGAGLRAAIEARLAGkkTAIISKS-LFGKaHTVMAEGGAAAAMGnvnsR-----DnwqvhfrdtmrggkflnnfRMAELHAkESPQRIWELE 105
                 9*****************888999*******.989747777777766664454431.....13455677777777888888777665546655555666 PP

                 HHHSSTTSEEEEEEEEEESS............................................................................... CS
         DAO  73 eelgididyrrtGllslaad............................................................................... 92 
                   +g  +d  + G++s  ++                                                                               
  KIR63117.1 106 T-YGALFDRTKDGKISQ-RNfggheyprlahvgdrtglelirtlqqkivslqqedkaefgsydarikvfaettitellldgekvagafgyyresgefil 202
                 4.566677778888887.456667777888888888888888888888888888888888888888888888888888888888888888888888888 PP

                 ..................................................................................................H CS
         DAO  93 ..................................................................................................e 93 
                                                                                                                   +
  KIR63117.1 203 feapavvlatggvgrsykvtsnsweytgdghalalragatlinmeflqfhptgmvwppsvkgilvtesvrgdggilknsdgkrfmfdyvpdvfrkqyaD 301
                 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888887754 PP

                 HHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEE CS
         DAO  94 eelealdkllallleagldaelldaeevrelepalpgllgalfypdtg 141
                 + +++ d++++++  +  + ell ++ev++     ++++++ ++p +g
  KIR63117.1 302 N-EAEADRWYKDPDNNRRPPELLPRDEVARAIN--SEVKAGRGTPAGG 346
                 4.6666788999876666778999977766553..3677777777766 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.5   3.2e-07   0.00048       1      32 [.      12      43 ..      12      87 .. 0.89
   2 ?   -2.2   0.0      0.83   1.2e+03     153     165 ..     203     215 ..     168     247 .. 0.71
   3 ?   -2.4   0.1      0.96   1.4e+03     373     384 ..     408     419 ..     389     436 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.2e-07
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVllleka 32
                 +dv+viG+G AGl aAi+a+ +gk+++++ k 
   KIR63117.1 12 YDVVVIGAGGAGLRAAIEARLAGKKTAIISKS 43
                 59**************************9875 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.83
                  EEESEEEE----S CS
  HI0933_like 153 leadklvlAtGGl 165
                  +ea ++vlAtGG 
   KIR63117.1 203 FEAPAVVLATGGV 215
                  678999*****85 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.96
                  TTSTTEEE-GGG CS
  HI0933_like 373 kkvpgLffaGEv 384
                   +v gLf aGEv
   KIR63117.1 408 GTVRGLFAAGEV 419
                  6899*******9 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.6     3e-05     0.045       2      32 ..      12      42 ..      11      56 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3e-05
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   +dV+++GaG aGl +a + + aG ++ ++ k
     KIR63117.1 12 YDVVVIGAGGAGLRAAIEARLAGKKTAIISK 42
                   69***************************98 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.0   3.2e-05     0.048       1      31 [.      15      44 ..      15      50 .. 0.86
   2 ?   -1.7   0.0      0.91   1.4e+03     165     182 ..     458     475 ..     444     481 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.2e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgn 31
                 ++iGaG aGl aaie++ ag  +  i+ k  
   KIR63117.1 15 VVIGAGGAGLRAAIEARLAGK-KTAIISKSL 44
                 79******************9.577998865 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.91
  Pyr_redox_3 165 qkvvViGgknSavDaAle 182
                  +  v iG+ + av++Al 
   KIR63117.1 458 RPKVSIGAVEAAVETALA 475
                  555669*********996 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   4.4   9.2e-06     0.014       1      31 [.      13      43 ..      13      66 .. 0.81
   2 ?   -0.2   0.0      0.28   4.1e+02     115     153 ..     174     217 ..     163     250 .. 0.69
   3 ?   -1.6   0.1      0.71   1.1e+03     354     367 ..     409     422 ..     406     425 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.2e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithk 31
                dv+ViG+G AG+ AA++a  +G k+++i ++
  KIR63117.1 13 DVVVIGAGGAGLRAAIEARLAGKKTAIISKS 43
                79*************************9443 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.28
                 ES-EEEEEECTTEEEE...EEETTS-EE..EECEEEE--TT-BT CS
        GIDA 115 eeeveeliveekkvkg...vvtedgeti..kakavviatGtflk 153
                 e +++el+++ +kv+g    + e+ge i  +a avv+atG   +
  KIR63117.1 174 ETTITELLLDGEKVAGafgYYRESGEFIlfEAPAVVLATGGVGR 217
                 456788888888887722245677776511566*******8443 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.71
                 SSBTEEE-CGGGTB CS
        GIDA 354 kvkgLflAGqinGt 367
                 +v+gLf+AG+++G 
  KIR63117.1 409 TVRGLFAAGEVSGG 422
                 5799*******995 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   3.5e-05     0.052      16      51 ..      10      44 ..       2      61 .. 0.82
   2 ?   -4.2   0.0       5.3   7.9e+03     111     134 ..     167     189 ..     166     190 .. 0.84
   3 ?   -0.8   0.2       0.5   7.4e+02     209     232 ..     407     430 ..     404     432 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.5e-05
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSS CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailersv 51
                   Dvv++GaG +GL aa       + k+ai+ +s+
  KIR63117.1 10 HHYDVVVIGAGGAGLRAAIEARL-AGKKTAIISKSL 44
                567**************987444.488999999886 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 5.3
                 TTEEEEESEEEEEEEEETBTEEEE CS
        Thi4 111 anvkllnavaveDlivregegvaG 134
                 a +k++  +++ +l++   e+vaG
  KIR63117.1 167 ARIKVFAETTITELLLDG-EKVAG 189
                 67999*999999999876.88888 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.5
                 CEEETTEEE-THHHHHHHT-EB-- CS
        Thi4 209 revvpnlyvaGmevaevdganRmG 232
                 +  v +l++aG  +  ++g nR+G
  KIR63117.1 407 YGTVRGLFAAGEVSGGMHGSNRLG 430
                 56799******************9 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.7   0.00015      0.22      28      58 ..      11      41 ..       1      57 [. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
                 --EEEEESTSHHHHHHHHHHHHTT-EEEEEE CS
  AlaDh_PNT_C 28 pakvlviGgGvaGlqAiatakglgakVtvlD 58
                 +  v+viG+G aGl A+  a+  g k+ ++ 
   KIR63117.1 11 HYDVVVIGAGGAGLRAAIEARLAGKKTAIIS 41
                 568******************9999998876 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   2.1    0.0046       6.9       1      38 [.      16      51 ..      16      66 .. 0.85
   2 ?   -2.9   0.0       5.5   8.2e+03      40      57 ..     283     299 ..     267     304 .. 0.70
   3 ?    0.5   0.1      0.48   7.1e+02      28      40 ..     441     453 ..     428     465 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0046
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasy 38
                   ++GaG +Gl aA +++ ag++  ++ k+  l G+a+++
     KIR63117.1 16 VIGAGGAGLRAAIEARLAGKKTAIISKS--LFGKAHTV 51
                   8**********************99774..77777766 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.5
                    ETTCEECTS---EEETTH CS
  NAD_binding_8  40 vpgvrvdygahifhgsgy 57 
                     + + +dy + +f++ +y
     KIR63117.1 283 GKRFMFDYVPDVFRK-QY 299
                    244999999999987.44 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.48
                    SSSSSGGG-EECE CS
  NAD_binding_8  28 rdrlGGraasyev 40 
                    + r GG+aasy +
     KIR63117.1 441 GKRAGGHAASYAD 453
                    4579999999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 4552.38
//
Query:       KIR63118.1  [L=268]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1811.18
//
Query:       KIR63119.1  [L=494]
Description: peptidase U62 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-36  126.4   0.1    2.5e-36  126.0   0.1    1.1  1  PmbA_TldD  Putative modulator of DNA gyrase


Domain annotation for each model (and alignments):
>> PmbA_TldD  Putative modulator of DNA gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.1   1.4e-40   2.5e-36       1     275 [.      29     301 ..      29     303 .. 0.81

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 1.4e-40
                 EEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEETTEEEE..EE...ESSHHHHHHHHHHHHHHCCS---TT-..........GGS-HHHHHHHH CS
   PmbA_TldD   1 eaevrleesestsvrfengevetnsssedsglgvrvikggrlgf..astldtsdealeeaveraveiaklapedpea..........eevsaeekiell 87 
                 eaev++++ + +  rf+n+ v++n  ++  ++ +rv  +gr++    s  +++  +l+++vera+++a+l p+dp +          +    + + + +
  KIR63119.1  29 EAEVVVTRADLALTRFANSFVHQNVAESGVSVRLRVHAEGRTAAggGSVVTPD--GLAALVERALAAARLCPPDPAWpgltprspvpA----APAWDEA 121
                 69*********************999998889999999****99875555677..**********************98886633332....2222222 PP

                 HHHH....HH.CHCSTTEEEEEEEEEE......EEE.EEEEEEETTSEEEEEEEEEEEEEEEEEE.STCSETEEEEEEEE.....SSHHHS..SSHHHH CS
   PmbA_TldD  88 eele....kalrsadpkienskgarisgvsaslsaskeeklianSeGldveqtrtrvslslsviaddggsgdgmgggsgy.....edleeedleeiaee 177
                  +++    +a +++ + ++ + g++++   + +++ +   ++anS+G +++    ++ +   +++         gg +g      ++l++ d  +++++
  KIR63119.1 122 TAFAepgeRA-ERVRAFVDAVGGLEAA---GYCRTGYRAAAFANSTGHSAQGVAAEAAMDGIART---------GGADGVarlhvDRLADLDGAALGAR 207
                 2222332132.3333344444466666...4589999999********99999999944444444.........334444565666777799999**** PP

                 HHHHHHCTTT-B---SEEEEEEE-HHHHHHHHHGHHHHHTBHHHHHTT--TTTT-TTSB-S-TT--EEEETT...-.....-SB-TTSBB---EEEEET CS
   PmbA_TldD 178 aaekalasleakplppgkypVvlspeavgsllheavghaleadavlegrSflkdklGekvaselltivddpt...sgglgsypfDdEGvptqrtvlIen 273
                 aa ka+a+ ++++lppg+y+Vvl+p+av++llh++  +++++++ +e +Sf     G   +++ +t+vddp+          pfD EG+ ++  +l++ 
  KIR63119.1 208 AAAKARAAVDPVELPPGRYEVVLEPAAVADLLHNFALWGFNGKRHAERQSFA--EPGVAQFDPAVTLVDDPLagsG-----LPFDVEGTGRRALTLVDA 299
                 **********************************999***************..99****************5544.....9****************9 PP

                 TE CS
   PmbA_TldD 274 Gv 275
                 G 
  KIR63119.1 300 GT 301
                 95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 3200.17
//
Query:       KIR63120.1  [L=478]
Description: peptidase U62 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-48  166.6   0.0    1.3e-48  166.3   0.0    1.1  1  PmbA_TldD  Putative modulator of DNA gyrase


Domain annotation for each model (and alignments):
>> PmbA_TldD  Putative modulator of DNA gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.3   0.0   7.2e-53   1.3e-48       1     276 [.      21     325 ..      21     327 .. 0.82

  Alignments for each domain:
  == domain 1  score: 166.3 bits;  conditional E-value: 7.2e-53
                 EEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEETTEEEEEE...ESSHHHHHHHHHHHHHHCCS---TT-....................GGS- CS
   PmbA_TldD   1 eaevrleesestsvrfengevetnsssedsglgvrvikggrlgfastldtsdealeeaveraveiaklapedpea....................eevs 79 
                 +a++r+ +++ +s++++ng+ve++++ e+ glgvr+++g  +gf   +++sd+a ++a +ra  ia  ++  p                      +   
  KIR63120.1  21 YADARVMHRRYESMSARNGDVEELTQDESLGLGVRALVGSGWGFHAVPELSDAAARDAGRRAALIAAASARVPGPpvdlvpaepvvaswssacevD--- 116
                 79******************************************7778999899999999999999555555554763333333333333333220... PP

                 HHHHHHHHHHHHHH.CHCST..............TEEEEEEEEEE......EEE.EEEEEEETTSEEEEEEEEEEEEEEEEEE..STCS......ET.E CS
   PmbA_TldD  80 aeekielleelekalrsadp..............kienskgarisgvsaslsaskeeklianSeGldveqtrtrvslslsvia.ddggs......gd.g 156
                                    p                + +++ +++ +++ ++ + ++k++++SeG ++ q+  +++ ++s++   dg++       + g
  KIR63120.1 117 -------------------PlgvalsdkgdllvgATATMREHGADLAEGLYQVWDTTKWFVSSEGHRIDQRIRECGGGISATSiGDGETqrrsypSYrG 196
                 ...................23333333333443322222244667779999********************************8874444578886667 PP

                 EEEEEEESSHHHS..SSHHHHHHHHHHCTTT-B---SEEEEEEE-HHHHHHHHHGHHHHHTBHHHHH......TT--TTTT-.TTS.B-S-TT--EEEE CS
   PmbA_TldD 157 mgggsgyedleeedleeiaeeaaekalasleakplppgkypVvlspeavgsllheavghaleadavl......egrSflkdk.lGe.kvaselltivdd 247
                 + g +g+e + + dl + a+++ae  +a+l a ++p+g+++++l+ e++++ +he+vgha+e+d++l      +g+S+l  + lG+ +++sel++++ d
  KIR63120.1 197 QYGTTGWELVTRLDLAAHAARVAEESRALLTAPECPAGETDLILGGEQLALQIHESVGHAIELDRILgweaafAGTSWLDLAqLGSlRYGSELMNVTID 295
                 78888887777788888*****************************************************9999*****5545**************** PP

                 TT-......-SB-TTSBB---EEEEETTEE CS
   PmbA_TldD 248 pts.gglgsypfDdEGvptqrtvlIenGvL 276
                 pt+ g+lgs++fDdEG p+ r++ +++G+ 
  KIR63120.1 296 PTIpGALGSFGFDDEGSPAVRRDAVREGRW 325
                 ****************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 3230.47
//
Query:       KIR63121.1  [L=182]
Description: hypothetical protein TK50_19715 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-23   83.5   0.2    1.4e-23   83.3   0.2    1.0  1  Uma2      Putative restriction endonuclease


Domain annotation for each model (and alignments):
>> Uma2  Putative restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.2   8.1e-28   1.4e-23       2     163 ..      15     170 ..      14     176 .. 0.91

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 8.1e-28
                 HHHHHHHHSTTEEEEETTS-EEE.EETSHHHHHHHHHHHHHHHHHHHHH-SEEEEETT--EE-TTS-EE--SEEEEEHHHHTS-HHHHSS-SS--SEEE CS
        Uma2   2 eeflqlpeneevryelvdGeliemsplggeheriaalLaallgnwlrerklgrvfaselgvrlpeeserePDvavvrgeweresrriweelpaaPdlvv 100
                 ee+l+l  ++ +r+el dG+l + + +++ h+ri+++L + l++++++   g+ +   ++vrl++++ ++PD++v++ +  + ++      +a++ lv 
  KIR63121.1  15 EEYLALG-ETSQRVELFDGSLHVTPAPTPRHQRISRKLGNILEPAAEA--VGLELLEAVNVRLQSGRVPVPDLVVTDPV--DLDDV--YVAAADVRLVC 106
                 89*****.***************88888*****************999..556677789999999************88..33333..13699****** PP

                 EE--TTS-.HHHHHHHHHHHHTT-SEEEEEETTTTEEEEE-TT....S--EEEES-SEEE-TTT CS
        Uma2 101 EVlspsts.kdleeKlelYaalgvpeywlvdpkertvevfrledgeyqlvevleegetlslela 163
                 E+ sp+++ +d+  K+  Yaa+ +  y+lv++++  ++++r+  ++y +++v ++ge+l+l + 
  KIR63121.1 107 EIISPGNAsTDKVLKMHYYAAAHIDWYLLVEQETGALRLHRRRHAHYVEHSVAKRGEVLELVEP 170
                 **********************************************************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1523.51
//
Query:       KIR63122.1  [L=353]
Description: peptide ABC transporter ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-25   89.4   0.0    3.8e-25   89.0   0.0    1.1  1  ABC_tran   ABC transporter
    2.1e-18   66.6   0.2    5.3e-18   65.3   0.0    1.8  2  oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal reg
    2.3e-08   34.2   0.3    1.3e-06   28.5   0.0    2.1  2  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
     0.0027   17.2   0.1      0.011   15.2   0.1    1.7  1  SMC_N      RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.016   15.4   0.4      0.077   13.3   0.4    1.9  1  AAA_22     AAA domain
       0.08   12.7   0.0       0.15   11.8   0.0    1.4  1  AAA_29     P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.0   1.3e-28   3.8e-25       2     136 ..      34     192 ..      33     193 .. 0.92

  Alignments for each domain:
  == domain 1  score: 89.0 bits;  conditional E-value: 1.3e-28
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx........... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren........... 79 
                 + vs+ +++g+++a+vGe+G+GKS    +++gl++p      G i + g++l      + ++   + +++++q+  + l p +tv+++           
  KIR63122.1  34 DGVSFAVERGRTLAVVGESGSGKSVTSLAILGLHDPrrttVTGGISVGGRQLVGlpeqDVRRLRGRDVAMIFQDplSALHPYYTVGRQiaeayrvhhpg 132
                 78**********************************7766677778888888888885566667789*******9999********************* PP

                 ....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                     e+++++ ++l ++g+++ ++++ ++ p+++SgG++qr ++a+al+++p ll++DEpt
  KIR63122.1 133 agrrEARRRAVDMLGRVGIPQ-PERRYDQYPHEFSGGMRQRAMIAMALVNDPALLIADEPT 192
                 **9999999***********9.99999*********************************9 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       3.2   9.4e+03      13      17 ..     111     115 ..     103     118 .. 0.81
   2 !   65.3   0.0   1.8e-21   5.3e-18       1      62 [.     244     306 ..     244     308 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.2
   oligo_HPY  13 plHPY 17 
                 +lHPY
  KIR63122.1 111 ALHPY 115
                 68**9 PP

  == domain 2  score: 65.3 bits;  conditional E-value: 1.8e-21
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd.klekikgeapslerldeGCpFapRCpfal 62 
                 vE g++++++++p+HPYT +Ll+svp+l+   d  l+ i+g++psl +l+ GC F+pRC++a 
  KIR63122.1 244 VEHGSAEQVLRRPRHPYTWGLLSSVPSLHGDADaDLVPIPGNPPSLIDLPPGCAFHPRCRYAD 306
                 8****************************999999*************************985 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.015        45       3      24 ..      47      68 ..      46      99 .. 0.80
   2 !   28.5   0.0   4.2e-10   1.3e-06     220     301 ..     148     227 ..     105     228 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.015
      AAA_21  3 vliGpNgsGKSnLLdaldllar 24
                +++G  gsGKS    a+ +l++
  KIR63122.1 47 AVVGESGSGKSVTSLAILGLHD 68
                689**************99975 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 4.2e-10
      AAA_21 220 gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSpll 301
                  v +  ++++++  ++e+S G+++  a++++ l  ++  +ll+ DEp + L+  +++ +l+ll +l++  ++ +il TH+  +
  KIR63122.1 148 RVGIPQPERRYDQYPHEFSGGMRQR-AMIAMALVNDP--ALLIADEPTTALDVTVQAQILDLLADLQAeFRSAIILITHDLGV 227
                 55555677889999***********.99999999887..99**********************7777779*********9765 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   3.7e-06     0.011      27     211 ..      46     238 ..      35     245 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.7e-06
                 EEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.........BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.........skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingk 116
                  a+vG+ GSGKs    Ai   LG ++    r+++++  i+          +++ +++   +v+++f+++ ++    ++ +++ r++ +  + ++   g+
  KIR63122.1  46 LAVVGESGSGKSVTSLAI---LGLHDP---RRTTVTGGISVggrqlvglpEQDVRRLRGRDVAMIFQDPLSA---LHPYYTVGRQIAEAYRVHHPGAGR 135
                 589*********999999...897665...5555554444444455555777888888899****9999887...78899***********99999999 PP

                 EE-HHHHHHHHHCTT-STT.........CS-HH..HHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHC CS
                 xxxxxxxxxxxxxxxxxxx.........xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
       SMC_N 117 evtkkevsellesagiske.........lLSgG..ektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreeml 202
                 +  ++   ++l ++gi +          ++SgG  +++++a+aL+      +  +l + De   aLD +  +++ +ll   + +  + +i i+++ +++
  KIR63122.1 136 REARRRAVDMLGRVGIPQPerrydqyphEFSGGmrQRAMIAMALV------NDPALLIADEPTTALDVTVQAQILDLLADLQAEfrSAIILITHDLGVV 228
                 99999999********877799999999*****444455555555......7778999*********************87776447899999998888 PP

                 CC-.SCEEEE CS
                 xxx.xxxxxx RF
       SMC_N 203 eka.dklvgv 211
                  ++ d+++ +
  KIR63122.1 229 GQVaDEVLVM 238
                 6653555544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.4   2.6e-05     0.077       5      70 ..      43     111 ..      40     227 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.6e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee........erpevvfvtlpsstsskdllrellralglelka 70 
                  + l+v+GesG+GK+++   +l  +d +    +        +     +v lp++  ++   r+++ +++++l+a
  KIR63122.1  43 GRTLAVVGESGSGKSVTSLAILGLHDPRRTTVTggisvggrQ-----LVGLPEQDVRRLRGRDVAMIFQDPLSA 111
                 67799***********99998888865433222333333330.....444444442222244444444444444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     5e-05      0.15      13      37 ..      34      58 ..      31      75 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5e-05
      AAA_29 13 dghtieidlkgatlltGpsGsGKST 37
                dg ++ +++  +  ++G+sGsGKS 
  KIR63122.1 34 DGVSFAVERGRTLAVVGESGSGKSV 58
                66777787555999**********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2422.96
//
Query:       KIR63123.1  [L=355]
Description: peptide ABC transporter ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-30  104.9   0.0    6.2e-30  104.5   0.0    1.2  1  ABC_tran   ABC transporter
    2.2e-17   63.3   0.1    3.8e-17   62.5   0.1    1.4  1  oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal reg
    2.6e-05   24.5   0.0    0.00022   21.5   0.0    2.0  1  AAA_22     AAA domain
     0.0032   17.3   0.1      0.052   13.4   0.0    2.1  2  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
  ------ inclusion threshold ------
      0.033   14.6   0.2      0.059   13.8   0.1    1.6  1  AAA_16     AAA ATPase domain
      0.046   13.2   0.0       0.13   11.6   0.0    1.7  1  SMC_N      RecF/RecN/SMC N terminal domain
      0.079   12.4   0.0       0.77    9.1   0.0    2.0  2  TniB       Bacterial TniB protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.0   2.4e-33   6.2e-30       2     136 ..      31     181 ..      30     182 .. 0.93

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 2.4e-33
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TTSBHHHH..............HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx..............xx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpeltvren..............es 81 
                 + +++ +++ e++++vGe+G+GKSt  ++l +ll+pt+G+i++ g+d+++   +el+ lr+ +++++q+  ++l+p++tv++                 
  KIR63123.1  31 DGLDFAVRPAETLGLVGESGCGKSTTGRMLVRLLEPTAGRIEFAGRDITHagrRELRPLRQDLQIIFQDpyASLNPRHTVGRIvamplrvngidppgGV 129
                 6899***********************************************9999**************999********999***9999999988888 PP

                 HTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  82 deeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +++++++l+ +gl+  +    ++ p+++SgGq+qrv +aral+ +pkl+++DEp 
  KIR63123.1 130 RRRVQELLELVGLNPEH---YNRYPHEFSGGQRQRVGIARALALRPKLIVADEPV 181
                 88899999988888844...45569*****************************7 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.1   1.5e-20   3.8e-17       1      65 []     233     298 ..     233     298 .. 0.96

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 1.5e-20
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd.klekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE+g+++++ ++p+HPYT+aLl+++p+ +r       ++ g++p + + ++GC+F++RCp a+++C
  KIR63123.1 233 VEIGDRADIYERPRHPYTRALLSAIPDATRLGPgGRIRLTGDVPTPLNPPSGCRFRTRCPKARDIC 298
                 8**************************999888778999**************************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   8.6e-08   0.00022      10     129 ..      45     211 ..      38     216 .. 0.65

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 8.6e-08
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee................................erpevv........fvtlpsst.....sskdllrellra 63 
                 ++GesG+GK+t+ r+l++ l+  a   e                                +++++v        +v+    +     + +   +ell+ 
  KIR63123.1  45 LVGESGCGKSTTGRMLVRLLEPTAGRIEfagrdithagrrelrplrqdlqiifqdpyaslNPRHTVgrivamplRVN----GidppgGVRRRVQELLEL 139
                 89******************765554447777777777777777777777777777777733333333332322222....222223445556666666 PP

      AAA_22  64 lglelkaerlsseell.ealeqalrarav...ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLvG 129
                 +gl+ ++++   +e+   + ++   ara    ++l++ DE    l+   ++++++ Lr+l+   + g++++++ 
  KIR63123.1 140 VGLNPEHYNRYPHEFSgGQRQRVGIARALalrPKLIVADEPVSaLDvsiQAQVVNLLRDLQR--DLGLAFVFIA 211
                 6666666444444444344444444444477889******8777988555999*******99..9999999885 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.05   1.3e+02       3      23 ..      44      64 ..      43      97 .. 0.80
   2 !   13.4   0.0     2e-05     0.052     227     301 ..     144     216 ..      71     218 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.05
      AAA_21  3 vliGpNgsGKSnLLdaldlla 23
                +l+G  g+GKS+  + l  l 
  KIR63123.1 44 GLVGESGCGKSTTGRMLVRLL 64
                69**********988887774 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2e-05
      AAA_21 227 gdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSpll 301
                 +  +++ ++e+S G+++  +++ al+ ++   +l++ DEp + L+ ++++ ++ ll++l+r  g  +++  H+  +
  KIR63123.1 144 PEHYNRYPHEFSGGQRQRVGIARALALRP---KLIVADEPVSALDVSIQAQVVNLLRDLQRdLGLAFVFIAHDLAV 216
                 555788999*********99999999999...99**********************99999999999998888766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   2.3e-05     0.059      24      63 ..      39      78 ..      26     210 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
      AAA_16 24 p.elvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                p e + l+GesG+GKs+  r+l r le + +  ++   ++ 
  KIR63123.1 39 PaETLGLVGESGCGKSTTGRMLVRLLEPT-AGRIEFAGRDI 78
                4477889****************877777.33333333333 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.2e-05      0.13     113     204 ..     123     219 ..      36     231 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.2e-05
                 ETTEEE-HHHHHHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
       SMC_N 113 ingkevtkkevsellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreeml 202
                 i+     ++ v+elle +g+++e       ++SgG+++ v +a  +A++      l + De  +aLD +  ++v++ll+  + +    f+ i+++  ++
  KIR63123.1 123 IDPPGGVRRRVQELLELVGLNPEhynryphEFSGGQRQRVGIARALALRP----KLIVADEPVSALDVSIQAQVVNLLRDLQRDlgLAFVFIAHDLAVV 217
                 566666678899999999999999999999***************99854....48999********************88877446677777776666 PP

                 CC CS
                 xx RF
       SMC_N 203 ek 204
                 ++
  KIR63123.1 218 RH 219
                 55 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.11   2.8e+02      37      51 ..      42      56 ..      34      70 .. 0.81
   2 ?    9.1   0.0    0.0003      0.77     117     161 ..     169     211 ..     148     219 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.11
        TniB 37 nlllvGdsnnGKtmi 51
                 l lvG+s +GK++ 
  KIR63123.1 42 TLGLVGESGCGKSTT 56
                5679*********86 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0003
        TniB 117 elkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvG 161
                 +l++++++ DE  ++l   ++ q +++n+l+ L+++l +++v + 
  KIR63123.1 169 ALRPKLIVADEPVSAL--DVSIQAQVVNLLRDLQRDLGLAFVFIA 211
                 67899******99999..6778899**************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2330.19
//
Query:       KIR63124.1  [L=333]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-24   87.2  10.0    1.1e-24   87.2  10.0    2.4  3  BPD_transp_1  Binding-protein-dependent transport system inne
    2.2e-09   37.2   0.2    2.2e-09   37.2   0.2    3.3  5  OppC_N        N-terminal TM domain of oligopeptide transport 
  ------ inclusion threshold ------
      0.036   12.8   1.8      0.069   11.8   1.8    1.4  1  EMP70         Endomembrane protein 70


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.025   1.5e+02     127     175 ..      13      65 ..       9      71 .. 0.66
   2 ?   -2.6   0.1      0.62   3.7e+03     158     167 ..     121     130 ..      91     135 .. 0.45
   3 !   87.2  10.0   1.8e-28   1.1e-24       1     182 [.     136     330 ..     136     333 .] 0.92

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.025
  BPD_transp_1 127 lleflgswpG....lgtllleailgydyseisnggvlalviavlllnlvadil 175
                    +e +g +pG    +g+   +  +++     ++++++a+++++ll+ l++ ++
    KIR63124.1  13 EIESTGDGPGgsrvVGRSPGQLAWARLRRDRTAVVSAAMLAFFLLVALAVPLI 65 
                   57778888888888888888888888888777555555555555555555444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.62
  BPD_transp_1 158 vlalviavll 167
                   +l+++ia ++
    KIR63124.1 121 SLFIAIAAAV 130
                   1222222222 PP

  == domain 3  score: 87.2 bits;  conditional E-value: 1.8e-28
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.........vilsilghlilpviillllsaapyvrlirraalrslpkdlveaar 88 
                   g++lG la+ + +++ld ++ ++++++l++P++++a+ l+  +              + +    ++i +l++++ ++rl+r +++  +++++veaar
    KIR63124.1 136 GVVLGTLAG-YLGGWLDAVVNWITDLTLAMPFLIIALALTPTIalrfygqreE-VPPAFQIGVLIAIFALFGWTSTARLVRGQVIALREREFVEAAR 230
                   89*******.****************************998879999*99962.3333445566888899*************************** PP

  BPD_transp_1  89 alGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlvadil 175
                   a Ga+  +++++ +lPn+  pi+ ++ la+++ ++  ++l+f+g    +g++  +++ g+++   +          +++ +++ ++v+++nl+ d+l
    KIR63124.1 231 ASGAGLGHMLFRQLLPNLWAPILVSFSLAVPSYITSEAALSFIG----VGLTDATPSFGRMIYRSLdylqtdpayvFFPGVTIFALVFAFNLFGDAL 323
                   ********************************************....999999999999988776899999999********************** PP

  BPD_transp_1 176 qrlldpr 182
                    ++ldp+
    KIR63124.1 324 RDALDPK 330
                   ******8 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.2   3.6e-13   2.2e-09       1      37 [.      30      67 ..      30      82 .. 0.89
   2 ?   -3.3   0.8       1.6   9.3e+03      16      18 ..     129     131 ..     121     150 .. 0.55
   3 ?   -2.7   0.1         1   6.2e+03      20      25 ..     167     172 ..     161     187 .. 0.60
   4 ?   -0.4   0.3       0.2   1.2e+03      24      32 ..     196     204 ..     191     212 .. 0.66
   5 ?   -2.2   0.2       0.7   4.2e+03      20      34 ..     307     321 ..     304     326 .. 0.71

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 3.6e-13
      OppC_N  1 slwqdawrrFkrNklAvvglvilllllliaifaPli.a 37
                s++q aw r++r+++Avv+ ++l+++ll+a+  Pli a
  KIR63124.1 30 SPGQLAWARLRRDRTAVVSAAMLAFFLLVALAVPLIeA 67
                899********************************944 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.6
      OppC_N  16 Avv 18 
                 Avv
  KIR63124.1 129 AVV 131
                 222 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1
      OppC_N  20 lvilll 25 
                 l+i l+
  KIR63124.1 167 LIIALA 172
                 333332 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.2
      OppC_N  24 llllliaif 32 
                 +l++++a+f
  KIR63124.1 196 VLIAIFALF 204
                 445555555 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 0.7
      OppC_N  20 lvilllllliaifaP 34 
                   i++l++++ +f++
  KIR63124.1 307 VTIFALVFAFNLFGD 321
                 567777777777776 PP

>> EMP70  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.8   1.1e-05     0.069     298     397 ..     130     225 ..     110     238 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.1e-05
       EMP70 298 lltvalllyvllgliaGYvsarlyktfggekwkkn.tlltalllpgllflvffllnlilwakessgalpfgtlvlllllwflisvPlvliGsllgfkkk 395
                 ++t+a+   v+lg++aGY++++l + ++   w +  tl +++l+ +l ++ ++ l +    +e   a+++g l+++++l+   s+   + G +++ +++
  KIR63124.1 130 VVTAAI--GVVLGTLAGYLGGWLDAVVN---WITDlTLAMPFLIIALALTPTIALRFYGQREEVPPAFQIGVLIAIFALFGWTSTARLVRGQVIALRER 223
                 444444..5789***********99997...87773677899999999**********************************************99976 PP

       EMP70 396 ai 397
                 ++
  KIR63124.1 224 EF 225
                 55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2331.72
//
Query:       KIR63125.1  [L=328]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-38  130.4  11.2    6.1e-38  130.4  11.2    1.8  3  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.28   10.8   4.5       0.06   12.9   0.6    1.8  2  RTA1          RTA1 like protein


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       0.4   3.6e+03     111     172 ..      14      26 ..       3      33 .. 0.42
   2 ?   -3.5   0.2      0.84   7.5e+03      26      37 ..     113     124 ..      94     126 .. 0.57
   3 !  130.4  11.2   6.8e-42   6.1e-38       1     184 [.     127     326 ..     127     327 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.4
  BPD_transp_1 111 itglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlva 172
                   +t++++++                                                 l++++
    KIR63125.1  14 LTLFAVSV-------------------------------------------------LSFLM 26 
                   22222222.................................................22222 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.84
  BPD_transp_1  26 vllslPsfvlai 37 
                   +   +P  vl++
    KIR63125.1 113 LSIVIPAAVLWL 124
                   223444444444 PP

  == domain 3  score: 130.4 bits;  conditional E-value: 6.8e-42
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.................vilsilghlilpviillllsaapyvrlirraalrslp 80 
                   g++lG+++al+r+ +ld+l  +++ ++ sl  + ++ +l+lvf                   l+++  l+l+++ l++l++a+y+rl r+++l++l+
    KIR63125.1 127 GVGLGMVSALRRGTWLDRLAIGFSLTGASLQLYFVGAVLLLVFvyhlrllpvpsytslfdDPLKWASGLVLAWVSLAFLFSAIYARLSRAQMLETLS 223
                   899******************************************************9998888899999*************************** PP

  BPD_transp_1  81 kdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqr 177
                   +d+v++ara+G+++ +++ +++l++a++p++t ++l +gg+lgg+v++e++++ +Glg++ ++a  + d++ i+ ++vl+++++v+l n+v+d+l++
    KIR63125.1 224 EDFVRTARAKGLTKPKVYGRHALRAAITPVVTIAGLDVGGALGGTVITETTFGIQGLGRTAVDAVRAGDLPTIM-ATVLIAAVFVVLANVVVDLLYA 319
                   **************************************************************************.********************** PP

  BPD_transp_1 178 lldprvr 184
                   ++dprvr
    KIR63125.1 320 AIDPRVR 326
                   *****98 PP

>> RTA1  RTA1 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.6   6.7e-06      0.06      83     155 ..     123     206 ..      99     224 .. 0.79
   2 ?   -2.3   0.2      0.32   2.8e+03      41      56 ..     298     313 ..     288     320 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.7e-06
        RTA1  83 lllqaaGGglaasasssae.aklGeniiiaGlalQvvvlvvFlllaldFllrvr..........kskkfkkfllalyaavllil 155
                  ll ++G g+ ++  + ++  +l+    ++G +lQ+ ++++ lll++ ++lr+           +  k+   l++  +++++++
  KIR63125.1 123 WLLLGVGLGMVSALRRGTWlDRLAIGFSLTGASLQLYFVGAVLLLVFVYHLRLLpvpsytslfdDPLKWASGLVLAWVSLAFLF 206
                 3455788899999988889999999*****************************999999999944567777776666666655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.32
        RTA1  41 PafiaaaiYmllgrli 56 
                  +++ aa++++l++++
  KIR63125.1 298 ATVLIAAVFVVLANVV 313
                 3444455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2175.58
//
Query:       KIR63126.1  [L=580]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-52  176.8   5.4      1e-51  176.1   5.4    1.2  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f
  ------ inclusion threshold ------
      0.062   13.4   0.0       0.12   12.6   0.0    1.3  1  PmrD       Polymyxin resistance protein PmrD


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.1   5.4   1.1e-55     1e-51       3     371 ..     111     490 ..     109     495 .. 0.86

  Alignments for each domain:
  == domain 1  score: 176.1 bits;  conditional E-value: 1.1e-55
                 EESSEEEEE..EEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHC.................TCTEEEEEEEETTEEEEEE CS
   SBP_bac_5   3 vpaLAesww..evsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyasllee.................dqdikkveavddytvrftl 82 
                 v++LAe  +   v+ D k++ f++++gvkF DG+p+t++ +++ + r  dpd a+g+++l+e+                 ++ + + +++d++t+rf++
  KIR63126.1 111 VGDLAET-PgtNVNNDCKVWQFTIKQGVKFEDGSPITSKEIAYGIARSFDPDLAGGPTYLQEWladtpqfdtkwdfkknkGALPPGLTTPDERTLRFEF 208
                 7889999.65679************************************************99*****************9****************** PP

                 SSETTTTTTHCHHHHHHHGCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTST....TT.SCSSSSEEEEEE-.SHHHHHHHH.HTTSS CS
   SBP_bac_5  83 kkpnalfltllaavpasiakkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYw....gg.gkpkldriefkvipdsdaraaal.qsGei 175
                 +kp+ ++++ ++ +  ++       ++d++ + ++ p ++GPYk+++ + g +++l rnp+ w    ++ +  ++d++++++ p++da+ + +   +  
  KIR63126.1 209 AKPRCDLPFAVSLPTTAPL----RPDKDTGVNLDQRPFSSGPYKIANNQVGVQLTLDRNPN-WdpatDPvRHQYPDQFVWSFGPTADAANNRViADNGP 302
                 ***7766666666666666....568999********************************.86666444666**********9888888888543333 PP

                 SEE....ESTTCCTHCHHHHHTTEEE.EEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCT.TTSSEEESSSSTTTSTTCCSCHCCCSH CS
   SBP_bac_5 176 ddv....aepppsdieqlkeakglkv.lyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavl.egyatpansllppsspgadeeykpayk 268
                 d      +++pps ++++ ++ +lk  ++ sp+++ + l++N+++    d +vRqAl+yAiDre +vka+  +  a+p ++l+pp   g+  +  ++  
  KIR63126.1 303 DQSalafNSVPPSLVARVAQDAALKSrTILSPTPSANQLVINNQR--VTDLKVRQALNYAIDREGLVKALGgQTIAQPLTTLMPPATIGFEAYEAYPAG 399
                 3222344999999999999999999999****************8..9**********************64556789999999998888888888766 PP

                 H.SHHHHHHHHHHHTT-BCSSTSCEETCEEEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEE.CHHHHHHHHHHCTTESEEEEEEECTTSTTHHH CS
   SBP_bac_5 269 a.ydpekAkklLkeaGykdgdggglrekklkltlllasgspaekaiaeliqqqlkkiGikvevktv.dwaatylervkdgdfdmillgwgadypdpdnf 365
                 a +d++kAk+lL   G +            + ++l +++++ e+  a+ ++ +l+++G+k++v+++ d a+ ++ ++k++ +d+++++w ad+p++ + 
  KIR63126.1 400 AnGDVDKAKELLG--GQT------------PELVLGVADNTNEQVQATQLKGNLERAGFKITVRNIpDDAKLDEVKKKNNPWDLYIGNWAADWPSGASI 484
                 6899999999994..222............367888999***************************77755555569999**************99987 PP

                 HHHHHS CS
   SBP_bac_5 366 lnpfls 371
                 l  ++ 
  KIR63126.1 485 LPVLYD 490
                 776665 PP

>> PmrD  Polymyxin resistance protein PmrD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.3e-05      0.12      29      75 ..     316     363 ..     307     365 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
                 EEEEEEESS---TT-EEEECCTT.EEEECTEEEEEEEEEEEEE--HHH CS
        PmrD  29 liaevesdlklkeGDlLsPlqda.rYclNrekaqtlKilsassYssdr 75 
                 l+a v +d +lk   +LsP   a +  +N+++   lK+++a +Y+ dr
  KIR63126.1 316 LVARVAQDAALKSRTILSPTPSAnQLVINNQRVTDLKVRQALNYAIDR 363
                 799999*************97653789*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3816.10
//
Query:       KIR63127.1  [L=104]
Description: hypothetical protein TK50_19745 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 731.24
//
Query:       KIR63128.1  [L=714]
Description: peptidase S9 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-42  144.1   0.0    6.1e-42  143.5   0.0    1.2  1  Peptidase_S9   Prolyl oligopeptidase family
    1.3e-28   99.8   0.0    1.3e-27   96.5   0.0    2.0  1  DPPIV_N        Dipeptidyl peptidase IV (DPP IV) N-terminal re
    8.2e-08   32.2   0.4    2.4e-06   27.4   0.2    2.2  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
    2.6e-05   23.6   0.1     0.0001   21.7   0.0    1.9  2  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.017   14.7   0.0       0.38   10.3   0.0    2.1  2  DLH            Dienelactone hydrolase family
      0.037   12.7   0.0        1.2    7.7   0.0    2.1  1  AXE1           Acetyl xylan esterase (AXE1)
      0.055   13.1   0.1       0.14   11.8   0.1    1.6  1  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.5   0.0   2.4e-45   6.1e-42       6     210 ..     511     714 .]     507     714 .] 0.91

  Alignments for each domain:
  == domain 1  score: 143.5 bits;  conditional E-value: 2.4e-45
                   HHHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTT.S--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---C CS
  Peptidase_S9   6 elqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakeg.yvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdv 101
                   e q++ad G++vv +++rG+ g   +f++a++r+l ++ ++D+i+a+ ala+++   d er++i+G+S+GG+l+g a+ ++p+lF++++a++pv+d+
    KIR63128.1 511 ERQWWADSGFAVVTVDNRGTPGVAPSFEKAVHRRLADVVLTDQIDALTALADKHpDLDLERVGIRGWSFGGWLAGLAVLRHPELFRCGIAGAPVTDW 607
                   679********************************************************************************************** PP

                   CCHHCSTTSTHHHCCCC--TTTCHHHHHHHHHH-CGGG--.....---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHH CS
  Peptidase_S9 102 lrydsdtdllteeymewgnpeeneegykelspyspldnvk.....aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkpra 193
                   + yd+    + e+y + ++     + y   s ++ +++          plLl+hGl Dd+v+ a++l+l aaL  +g ++ +l  +++ H ++ +  
    KIR63128.1 608 TLYDTA---YSERYLGLPED--GMDVYAHHSLLELAAE-PpvsgePARPLLLVHGLVDDNVVAAHTLRLSAALLAAGRPHSVLPLTGATHMAA-GGL 697
                   ******...*******8876..5566644444443333.236688999******************************************555.888 PP

                   HHHHHHHHHHHHHHHCT CS
  Peptidase_S9 194 kveelarllaFlkealg 210
                   + + l+ +l+Fl  +lg
    KIR63128.1 698 SERLLRLELDFLRTHLG 714
                   99999******999885 PP

>> DPPIV_N  Dipeptidyl peptidase IV (DPP IV) N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   5.2e-31   1.3e-27      43     315 ..     129     395 ..     108     424 .. 0.72

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 5.2e-31
                 T.BSEEEEESSTTEEEEEETTEEEEESTTTSEEEECES-STTTEE........ESB--HHHHHHTSSSSBEEEE-TTSSEEEEEEEECTTS-EEEEEES CS
     DPPIV_N  43 eklqlakwSPagdklafvrnnnLyvrelatgkeiqlTsdgsagif........nGvadWvyeEEvlgsnsavwWspdgsrlaylrfdeseVpeitlpsy 133
                 +++ +++  P+g++la+v +    vr+ + +    +  dg+++++         G+++ v+ EE ++++ ++wW+pdg+ ++ +r+des  p ++l ++
  KIR63128.1 129 GPALDPRPDPTGERLAYVTDAAAGVRRGELR---VVAPDGTDSLLagedggvtWGLPEHVAAEE-FHRFRGYWWAPDGRGVLAARVDESRLPHWHLHDP 223
                 5556666667777777777776666643222...2222443333333333333***********.********************************** PP

                 SSSC-SS-EEEEEE--BTTS---EEEEEEEECTTSCEEECS-HHHHCTTCEEEEEEEECTTSCCEEEEEEETTSTEEEEEEEETTTCCEEEEEEEESSS CS
     DPPIV_N 134 tdeesqypevksikYPkaGsknpkVelkvvdlasgktvevqlpdslsekdeyitrvkWtsdeksllvqwlnRsqnrlkvvlvdaetgravvkleetsdg 232
                 +d++s     +++ YP+aG +n +V+l+++dl++g  v v  +   +e+  y+++v+W++ +   l+++l+Rsq++  v +vd++tg+++v  e  ++ 
  KIR63128.1 224 ADPAS---PPTTVAYPQAGGPNAEVSLHLLDLDDGW-VDVHWD---RETYPYLASVDWADGNP--LLTVLRRSQQHGLVLAVDPRTGETQVHAELADPR 313
                 ***99...999************************7.477777...899*********77755..999******************************* PP

                 -SSS.-S-EEE-TTTSSEEEEEEE..TTSSEEEEEEESSS-C.EEESS-SSS-EEEEEEEETTTTEEEEEESSSETTEBEEEEEES CS
     DPPIV_N 233 Wvel.hdevhflkrdesgflwise..kdGfkHLylfdldgkseikqlTsGeweVtsilavdekrdlvyFtatkdsPlerhlYsvsl 315
                 Wve+   +++ l   + ++l   e  +dG++  +lf   +   + +       V+ + a +   dl+  +a++ +P +rhlY+v++
  KIR63128.1 314 WVEPiPGTPAHL--PDGRVLVGGElaHDGYDARCLFADGTLL-TPPSLYVRRVVGRLPAGNGPADLLV-EASEGEPSQRHLYRVRT 395
                 **6513344434..4444444444467777777666654444.3333334444455444455544443.77777777777777776 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.2   9.3e-10   2.4e-06       4     140 ..     470     609 ..     468     635 .. 0.78
   2 ?    2.5   0.0     0.037        94     230     259 ..     650     683 ..     644     693 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 9.3e-10
                    EEEEEEEEE...TTSSSEEEEEEEESS-..CCT.CCCCHTTCHHCCHGGGHHHHHTT-EEEEEE-TTSTTS-S---TTTTTHHHHHH..HHHHHHH CS
  Peptidase_S15   4 rLavdiyrP.etkskeklPvlltrtPYg..kndelasdkalaleelelqdkvfvarGYavVvqdvrGtggSeGeftvgdsdeaedga..dvidWla 94 
                    rL   ++ P ++ ++ +lPvll    Yg    +e ++ +a +     l+++ ++++G+avV +d rGt g    f+ +  +  +d++  d id l+
     KIR63128.1 470 RLPSAVVYPtQHVKGTRLPVLLD--VYGgpGHQEVVAARAAW-----LERQWWADSGFAVVTVDNRGTPGVAPSFEKAVHRRLADVVltDQIDALT 558
                    788999***99999********7..68844333333333333.....44456************************99777776664224566666 PP

                    H....C.TTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEEECE-S-TCC CS
  Peptidase_S15  95 k....q.pwsnGkVgmtGiSYlGttqllaaatgvpalkaivpeaaisdlyd 140
                    +    + +    +Vg  G S++G+++ la  ++++  ++ ++ a+++d+  
     KIR63128.1 559 AladkHpDLDLERVGIRGWSFGGWLAGLAVLRHPELFRCGIAGAPVTDWTL 609
                    66666567888********************99999************964 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.037
                    -EEEEEECCSSTTC.CHHHHHHHHHCCTT-...E CS
  Peptidase_S15 230 pvllvgGwnDwnvk.ngaiklyealkapgv...k 259
                    p+llv+G+ D+nv+  ++++l  al a+g     
     KIR63128.1 650 PLLLVHGLVDDNVVaAHTLRLSAALLAAGRphsV 683
                    89************99999998888777766443 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.84   2.1e+03      25      41 ..      85     101 ..      84     102 .. 0.91
   2 !   21.7   0.0     4e-08    0.0001      25     114 ..     513     608 ..     506     619 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.84
  Hydrolase_4  25 eaLaaqGfavyalDhrG 41 
                  ++L a+G+  yalD+ G
   KIR63128.1  85 RRLSAAGIGSYALDAAG 101
                  5899**********988 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 4e-08
  Hydrolase_4  25 eaLaaqGfavyalDhrGhGrse...gkrghvpsfddyvdDlaafvekvkeehpel...plfllGhSmGGliallyllrypdkvaglilsaPalkik 114
                  +++a+ Gfav+++D+rG    +    k +h +  d +++D   ++++++++hp+l   ++ + G S GG +a l++lr+p+ ++  i  aP+ ++ 
   KIR63128.1 513 QWWADSGFAVVTVDNRGTPGVApsfEKAVHRRLADVVLTDQIDALTALADKHPDLdleRVGIRGWSFGGWLAGLAVLRHPELFRCGIAGAPVTDWT 608
                  689**************855555878888888889999*****************999999********************999999999988776 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00015      0.38      56     119 ..     531     591 ..     506     605 .. 0.69
   2 ?    2.0   0.0     0.051   1.3e+02     145     187 ..     649     691 ..     635     694 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
         DLH  56 pndeaeaaraldelvskvaeekvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaev 119
                 p+ ++  ++a++ + ++v    ++d+++a  a + + p+ + ++vg+ G+ +GG+la l   + 
  KIR63128.1 531 PGVAPSFEKAVHRRLADV---VLTDQIDALTALADKHPDLDLERVGIRGWSFGGWLAGLAVLRH 591
                 555555555555555555...4566667778888999*******************97655554 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.051
         DLH 145 apilalfgeeDefipadevekleealkaanvdlelkvYpgagH 187
                  p+l ++g  D  + a+++ +l  al aa+ ++ +    ga+H
  KIR63128.1 649 RPLLLVHGLVDDNVVAAHTLRLSAALLAAGRPHSVLPLTGATH 691
                 69999******************************99999999 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00047       1.2      98     188 ..     508     584 ..     462     590 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00047
                 GHHHHHHHHHTT-EEEEEE-TTTS..SSB-SSCCSS-SSSSTTTTTTSTTT-HHHHHHHHHHHHHHHHH.TSTTEEEEEEEEEEETHHHHHH CS
        AXE1  98 eihdllnyaaaGyavvvmdvRGqggesedkvgskgnkakGfiirGlldkeklyyrrvflDavrlveiva.slpevDeeRvavlGasqGGala 188
                  + +   +a +G+avv++d RG  g +   ++ ++        r l          v +D + ++ ++a  +p  D eRv++ G+s GG la
  KIR63128.1 508 AWLERQWWADSGFAVVTVDNRGTPGVAPSFEKAVH--------RRLA-------DVVLTDQIDALTALAdKHPDLDLERVGIRGWSFGGWLA 584
                 55555566666666666666666654444333332........2222.......24667777777665426888999999999999998776 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   5.5e-05      0.14       1     113 [.     488     610 ..     488     633 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.5e-05
                    SEEEEE-STTTCGGGGTTGHHHHHHHHT.....TSEEEEEEETTSTTSSSTTTGB..CHHSHHHHHHHHH...HH...HHHCTTSSEEEEEETHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakd.....gfdvillDlrGvgySspapacin.ddygtasvaddld...ri...ldalgddkltlvGhSmGG 84 
                    pvl+ + G+pg  +v a+   a  L+++     gf v+++D rG +   p+ ++ +  +  ++ + d +d   ++      l+++++ + G+S+GG
     KIR63128.1 488 PVLLDVYGGPGHQEVVAA--RAAWLERQwwadsGFAVVTVDNRGTPGVAPSFEKAVhRRLADVVLTDQIDaltALadkHPDLDLERVGIRGWSFGG 581
                    567778889995555333..3333334444444**********998887777777776666666666666332445555568889999******** PP

                    HHHHHHHHHHGGGEEEEEEESECSSCCHH CS
  Abhydrolase_1  85 mialayaaeyperVkalvllgaidpaasl 113
                     +a  + +++pe  ++ ++ ++++++  +
     KIR63128.1 582 WLAGLAVLRHPELFRCGIAGAPVTDWTLY 610
                    ****************9998885555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.54
# Mc/sec: 4010.44
//
Query:       KIR63129.1  [L=327]
Description: 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-26   91.2   0.8    1.2e-25   90.7   0.8    1.3  1  PIG-L     GlcNAc-PI de-N-acetylase


Domain annotation for each model (and alignments):
>> PIG-L  GlcNAc-PI de-N-acetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.8   6.5e-30   1.2e-25       1     130 [.      31     181 ..      31     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 6.5e-30
                 EEEESSTTHHHHHHHHHHHHHHHTT-EEEEEECE--TT---STTTTHH......-HHHHHHHHHHHHHHHHCTE..EEEEECC....CBTT-STT.... CS
       PIG-L   1 llvlAHpDDellfaggtiaklvaagvevkivcltaGdagsplatleek......eelaeiRekEaraaakhlgvadedvffld....fpDgsles.... 85 
                 llv+AHpDDe+++ g t+a+++aag++v +v++t G++g+      ++      ++l+  R  E+ aa+++lgv   d+ fl+    ++D+++      
  KIR63129.1  31 LLVHAHPDDESIGTGSTMAHYAAAGAHVTLVTCTLGEEGEIHVPELAQlaaaeaDQLGGFRIGELAAACAALGV--TDHRFLGgagrYRDSGMMGlatn 127
                 79*************************************88888887799999999******************..9******9999999999999999 PP

                 ........S-CHHHHHHHHHHHHHH--SEEEEE-TTTT.H-HHHHHHHHHHHHH CS
       PIG-L  86 ........ydedellddlaklieryrPdvvltldpegd.dhpDHtavasaavaa 130
                          d d+++  ++++++++rP+v++t+dp+g  +hpDH  ++++a++a
  KIR63129.1 128 dhprafwqADLDTAAGFVVEVMREVRPQVMITYDPNGFyGHPDHIQAHRVAMRA 181
                 99999998899999999*********************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2488.98
//
Query:       KIR63130.1  [L=154]
Description: hypothetical protein TK50_19765 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.059   12.4   4.6      0.069   12.2   4.6    1.0  1  Acyl_transf_3  Acyltransferase family
       0.61    9.7  14.4        0.1   12.3   3.9    2.0  2  DUF4203        Domain of unknown function (DUF4203)
        3.6    8.2   5.0        3.9    8.1   0.1    2.6  2  YtxH           YtxH-like protein


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   4.6   1.2e-05     0.069     161     290 ..       6     141 ..       1     144 [. 0.61

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.2e-05
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxx... RF
  Acyl_transf_3 161 hlllllilllllslvfirhelfgpatsvgllplpsvlallfflfGalladaddrdrnlsr.......glkislllsllllalillalfgqtdg... 246
                     ++ ll+++l+ + v+ r ++     + + +++ + l ++f+++G++la + +r+++              + +++ll+++++ l++++   +   
     KIR63130.1   6 RAVGLLAVALFAVNVVARVVIRLGFDGDDTAADRVSL-AMFLVIGLILAVLAFRWGQDHPlgrwaadVAAGVGVALLLTVLVGPLLVGQ---Npfg 97 
                    3334444444444444444443333333333333333.999999999999999988887765555543333333333333333344444...2554 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 247 gglvasvliqsaslllvslgimllllllfalpsrsafkllrylg 290
                    gg   + +    +l++ ++g+++ +l++ al +  + + l+  +
     KIR63130.1  98 GGAGTFFAQIWLYLAATAAGVLVGYLTVTALGRDHRSRMLKRYA 141
                    99999999999999999**********99999999888777655 PP

>> DUF4203  Domain of unknown function (DUF4203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.9   1.7e-05       0.1      24     104 ..       8      92 ..       4      97 .. 0.68
   2 ?    3.0   3.4     0.012        72      67      98 ..      97     128 ..      90     138 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.7e-05
     DUF4203  24 tlflsgfllgsllvlvlilkvvvlp.....sslvqgaslvaalvvGllgGllallf...welglfllgalgGlllallilsllegglit 104
                 +  l  +l+++ +v+ ++ +          +++   +sl+++lv+Gl++++la+ +   ++lg  ++ +++G+ +all+++l++ +l+ 
  KIR63130.1   8 VGLLAVALFAVNVVARVVIR----LgfdgdDTAADRVSLAMFLVIGLILAVLAFRWgqdHPLGRWAADVAAGVGVALLLTVLVGPLLVG 92 
                 33333444444443333333....233346**********************74443336788888888************99766665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.012
     DUF4203  67 gGllallfwelglfllgalgGlllallilsll 98 
                 gG+   +f+++ l+l+  ++G+l+++l++++l
  KIR63130.1  97 GGGAGTFFAQIWLYLAATAAGVLVGYLTVTAL 128
                 56666999999999999999999999999887 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   1.6      0.19   1.2e+03       8      19 ..      72      83 ..      70      84 .. 0.89
   2 ?    8.1   0.1   0.00065       3.9       5      38 ..     111     144 ..     108     147 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.19
        YtxH  8 aavGaaaglLlA 19
                +a+G++++lLl+
  KIR63130.1 72 VAAGVGVALLLT 83
                59********85 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00065
        YtxH   5 liGaavGaaaglLlAPksGketRkdlkekaddlk 38 
                 l+ +a+G+++g+L+    G++ R ++ +++ ++k
  KIR63130.1 111 LAATAAGVLVGYLTVTALGRDHRSRMLKRYAEIK 144
                 7889********************9999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1113.93
//
Query:       KIR63131.1  [L=350]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-09   35.9   0.0    1.2e-08   34.8   0.0    1.5  1  FR47             FR47-like protein
    1.6e-08   34.8   0.1    2.7e-08   34.0   0.1    1.4  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    0.00012   22.4   0.0    0.00025   21.4   0.0    1.5  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00031   21.4   0.0    0.00057   20.6   0.0    1.6  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
     0.0067   16.4   0.0      0.011   15.7   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   3.3e-12   1.2e-08      24      81 ..     284     342 ..     267     346 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 3.3e-12
                 EEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-.S-EEEEEETT-HHHHHHHHHHT-EEEE CS
        FR47  24 lgalqvlpehrrrGlgsrlvkalakeiaerg.ktvllvvvasNtpsirlyeklGfekie 81 
                 l+ ++ lp +rr+Gl++ +v+ala   a+ g   ++l v + Ntp+  ly +lGf+   
  KIR63131.1 284 LSLIEALPHARRQGLATHVVRALADWGAALGaSGAFLQVEQRNTPAVTLYRRLGFTTHH 342
                 88999********************9999761569********************9874 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.1   7.6e-12   2.7e-08      38     117 .]     261     338 ..     243     338 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 7.6e-12
                     EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  38 aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     ++ dg l++ ++++   d  g+   +  +   p +r++Gl+++ ++al+++    g+   +l+ve+ n++a+ lY++lGF
      KIR63131.1 261 VYADGVLLAIARGTVTGD--GRWLGLSLIEALPHARRQGLATHVVRALADWGAALGASGAFLQVEQRNTPAVTLYRRLGF 338
                     677888999999999988..88899999999**************************777***************88**9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   6.9e-08   0.00025      30      75 ..     287     339 ..     246     340 .. 0.63

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6.9e-08
                     EEE-GGGTTSSHHHHHHHH.....TT...SEEEEE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  30 laVdpeyrgkGiGraLlea.....ae...kgiile.qlelnaekaikfYeklGFe 75 
                     +  +p++r++G+++  ++a     a+   +g   + q+e ++++a+ +Y++lGF+
      KIR63131.1 287 IEALPHARRQGLATHVVRAladwgAAlgaSGA--FlQVEQRNTPAVTLYRRLGFT 339
                     44689*************85555422344452..3345554449**********7 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.6e-07   0.00057      89     138 .]     291     339 ..     231     339 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.6e-07
  Acetyltransf_3  89 psfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     p+++++G+at +vral ++  + lg++  +  ++++N+  ++++++lGf+
      KIR63131.1 291 PHARRQGLATHVVRALADWG-AALGASGAFLQVEQRNTPAVTLYRRLGFT 339
                     7899****************.8999************************6 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.1e-06     0.011      52     109 ..     280     341 ..     243     346 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.1e-06
  Acetyltransf_10  52 s..hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkav 109
                      +   +sl+   p++r+qG+++  + a+ +     g +   l v++ +  av +Y++lGF+++
       KIR63131.1 280 RwlGLSLIEALPHARRQGLATHVVRALADWGAALGASGaFLQVEQRNtPAVTLYRRLGFTTH 341
                      255667777789*****************9657777777********9***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2630.20
//
Query:       KIR63132.1  [L=108]
Description: ferredoxin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-10   39.3  17.9    1.4e-08   34.2   5.2    2.5  2  Fer4      4Fe-4S binding domain
    5.4e-07   30.5   1.8     0.0003   21.6   0.1    2.2  2  Fer4_16   4Fe-4S double cluster binding domain
    1.5e-05   25.5  12.6    0.00026   21.5  13.1    2.1  2  Fer4_7    4Fe-4S dicluster domain
    0.00015   21.7   4.9    0.00015   21.7   4.9    2.3  2  Fer4_6    4Fe-4S binding domain
    0.00017   21.7   9.3    0.00033   20.7   9.3    1.5  1  Fer4_9    4Fe-4S dicluster domain
    0.00019   21.5   9.0     0.0002   21.4   0.8    2.1  2  Fer4_10   4Fe-4S dicluster domain
    0.00026   21.2   2.0    0.00026   21.2   2.0    2.5  2  Fer4_4    4Fe-4S binding domain
    0.00062   20.2   4.4      0.002   18.5   0.0    2.2  2  Fer4_8    4Fe-4S dicluster domain
     0.0014   18.6   3.7     0.0014   18.6   3.7    2.7  2  Fer4_2    4Fe-4S binding domain
     0.0015   18.7  14.8     0.0065   16.6  14.8    1.9  1  Fer4_21   4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.015   15.8  13.0      0.057   14.0   2.5    2.2  3  Fer4_17   4Fe-4S dicluster domain
      0.088   13.4   9.8       0.13   12.8   1.9    2.4  2  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I
       0.14   12.3   5.5       0.22   11.7   5.5    1.3  1  Fer4_11   4Fe-4S dicluster domain
       0.25   12.4  16.6       0.25   12.4   7.1    2.8  2  Fer4_3    4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   3.3    0.0001      0.13      12      24 .]      15      27 ..      12      27 .. 0.89
   2 !   34.2   5.2   1.1e-11   1.4e-08       2      23 ..      34      55 ..      33      56 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
                THHHHHSTTTEEE CS
        Fer4 12 GaCvevCPvgAIt 24
                +aC+e CPv++I+
  KIR63132.1 15 KACIEECPVDCIY 27
                69*********96 PP

  == domain 2  score: 34.2 bits;  conditional E-value: 1.1e-11
                EEETTTSSS-THHHHHSTTTEE CS
        Fer4  2 videekCigCGaCvevCPvgAI 23
                +i+++ C+ CGaC+ vCPv+AI
  KIR63132.1 34 YIHPDECVDCGACEPVCPVEAI 55
                89*******************9 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.2    0.0028       3.6       6      20 ..      15      29 ..      13      37 .. 0.84
   2 !   21.6   0.1   2.4e-07    0.0003       2      20 ..      40      58 ..      39      95 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0028
     Fer4_16  6 gkCaevCPtnaikek 20
                ++C+e CP+++i e 
  KIR63132.1 15 KACIEECPVDCIYEG 29
                58**********887 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 2.4e-07
     Fer4_16  2 CgtCgkCaevCPtnaikek 20
                C++Cg+C  vCP++ai  +
  KIR63132.1 40 CVDCGACEPVCPVEAIFYE 58
                ***************9755 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   2.3     0.027        34      35      51 ..       6      24 ..       2      25 .. 0.68
   2 !   21.5  13.1     2e-07   0.00026       6      52 .]      15      54 ..       8      54 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.027
      Fer4_7 35 pekClgC..gaCvavCPtg 51
                +e C++   +aC+++CP++
  KIR63132.1  6 AEPCVDVldKACIEECPVD 24
                56676642267******97 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 2e-07
      Fer4_7  6 gaCvaaCpvkaieldeeenekgtekveidpekClgCgaCvavCPtga 52
                +aC + Cpv++i+  +       + ++i+p++C++CgaC+ vCP++a
  KIR63132.1 15 KACIEECPVDCIYEGN-------RMLYIHPDECVDCGACEPVCPVEA 54
                69**********9754.......469******************987 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   5.0     0.085   1.1e+02       4      24 .]       4      26 ..       3      26 .. 0.78
   2 !   21.7   4.9   1.2e-07   0.00015       4      24 .]      35      55 ..      33      55 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.085
      Fer4_6  4 idpdkCig..CgdCvrvCPegai 24
                i +++C++    +C+  CP + i
  KIR63132.1  4 IIAEPCVDvlDKACIEECPVDCI 26
                6678899544999******8765 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 1.2e-07
      Fer4_6  4 idpdkCigCgdCvrvCPegai 24
                i pd C++Cg+C+ vCP  ai
  KIR63132.1 35 IHPDECVDCGACEPVCPVEAI 55
                77999*************998 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   9.3   2.6e-07   0.00033       6      51 .]      15      55 ..       8      55 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.6e-07
      Fer4_9  6 gaCveaCpagvvvedaaerkarlraaseeaCigCgaCveaCpkgai 51
                +aC+e Cp + + e +   ++  +     +C++CgaC+ +Cp +ai
  KIR63132.1 15 KACIEECPVDCIYEGNRMLYIHPD-----ECVDCGACEPVCPVEAI 55
                68**********999999888874.....4************9987 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.0      0.02        26      42      56 .]       6      22 ..       1      22 [. 0.74
   2 !   21.4   0.8   1.5e-07    0.0002       2      24 ..      33      63 ..      32      96 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.02
     Fer4_10 42 vekCtgcg..aCveaCP 56
                 e C ++   aC+e+CP
  KIR63132.1  6 AEPCVDVLdkACIEECP 22
                56788874449*****9 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 1.5e-07
     Fer4_10  2 vvidddtCirCgkCvkaCPadl........t 24
                ++i +d C+ Cg+C  +CP+ +        +
  KIR63132.1 33 LYIHPDECVDCGACEPVCPVEAifyeddvpE 63
                5799****************66665444440 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   1.1      0.34   4.3e+02       9      16 ..      16      23 ..      14      27 .. 0.64
   2 !   21.2   2.0   2.1e-07   0.00026       1      16 [.      37      52 ..      37      64 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.34
      Fer4_4  9 sCvaaCPq 16
                +C+  CP+
  KIR63132.1 16 ACIEECPV 23
                56666664 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 2.1e-07
      Fer4_4  1 qerCigCgsCvaaCPq 16
                ++ C++Cg+C+ +CP+
  KIR63132.1 37 PDECVDCGACEPVCPV 52
                689************6 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   1.8      0.15     2e+02      55      64 ..      15      24 ..       5      25 .. 0.81
   2 !   18.5   0.0   1.6e-06     0.002       4      17 ..      39      52 ..      28      95 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.15
      Fer4_8 55 gaCtevCpvg 64
                +aC e+Cpv+
  KIR63132.1 15 KACIEECPVD 24
                7899999985 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 1.6e-06
      Fer4_8  4 kCieCgaCqsaCpv 17
                +C+ CgaC+  Cpv
  KIR63132.1 39 ECVDCGACEPVCPV 52
                57777777777773 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.2      0.29   3.7e+02      15      21 ..      16      22 ..       6      23 .. 0.80
   2 !   18.6   3.7   1.1e-06    0.0014       3      21 ..      33      51 ..      31      52 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.29
      Fer4_2 15 aCvsaCP 21
                aC+  CP
  KIR63132.1 16 ACIEECP 22
                7999998 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.1e-06
      Fer4_2  3 vvvdtdrCigCgaCvsaCP 21
                 ++ +d C+ CgaC  +CP
  KIR63132.1 33 LYIHPDECVDCGACEPVCP 51
                578899************* PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6  14.8     5e-06    0.0065      12      57 ..      15      55 ..       2      57 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5e-06
     Fer4_21 12 gkCliaCedtshqaieidaktvlkvvedeCvGCnlCssvCPvedci 57
                + C+  C+   +++i  +++++l +  deCv C  C  vCPv ++i
  KIR63132.1 15 KACIEECP---VDCIY-EGNRMLYIHPDECVDCGACEPVCPV-EAI 55
                57999999...8**96.689999******************9.655 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.8      0.12   1.6e+02       7      22 ..      16      31 ..       8      38 .. 0.73
   2 ?   13.3   2.9   7.1e-05     0.091      44      58 ..      38      52 ..      28      54 .. 0.81
   3 ?   14.0   2.5   4.5e-05     0.057       2      17 ..      40      55 ..      39      91 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.12
     Fer4_17  7 yClpeCpsyeaydnep 22
                +C++eCp   +y+ ++
  KIR63132.1 16 ACIEECPVDCIYEGNR 31
                5888888766666555 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 7.1e-05
     Fer4_17 44 slCieCgeCerkCPq 58
                ++C+ Cg Ce +CP 
  KIR63132.1 38 DECVDCGACEPVCPV 52
                689999999999995 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 4.5e-05
     Fer4_17  2 CiqCgyClpeCpsyea 17
                C  Cg+C+p+Cp  ++
  KIR63132.1 40 CVDCGACEPVCPVEAI 55
                7777777777776555 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.2     0.027        35      48      56 ..      18      26 ..       9      27 .. 0.86
   2 ?   12.8   1.9    0.0001      0.13       4      24 ..      38      60 ..      35      70 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.027
     Fer4_13 48 adaCPvesI 56
                +++CPv++I
  KIR63132.1 18 IEECPVDCI 26
                799*****9 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.0001
     Fer4_13  4 dtCiacgaCvelaP..dvFeedd 24
                d+C++cgaC  ++P   +F edd
  KIR63132.1 38 DECVDCGACEPVCPveAIFYEDD 60
                8*************655777776 PP

>> Fer4_11  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   5.5   0.00017      0.22       4      64 ..       3      60 ..       1      67 [. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
     Fer4_11  4 lflpeqCrhCleppCvasapseaivkdeetGaVlldektkkeevrevveacPykivrknee 64
                ++++e C + l+++C++ +p++ i++ +   +  ++++++  ++ ++  +cP ++++++++
  KIR63132.1  3 YIIAEPCVDVLDKACIEECPVDCIYEGN--RMLYIHPDECV-DCGACEPVCPVEAIFYEDD 60
                578999*******************988..78999999997.************9998876 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.9     0.056        72       6      14 ..      16      24 ..       7      25 .. 0.82
   2 ?   12.4   7.1   0.00019      0.25       1      15 []      40      54 ..      40      54 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.056
      Fer4_3  6 aCvevCPvg 14
                aC e CPv+
  KIR63132.1 16 ACIEECPVD 24
                8******97 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00019
      Fer4_3  1 CtgCgaCvevCPvgA 15
                C+ CgaC+ vCPv A
  KIR63132.1 40 CVDCGACEPVCPVEA 54
                999*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 757.55
//
Query:       KIR63133.1  [L=344]
Description: prephenate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-48  164.9   0.0    2.2e-48  164.5   0.0    1.1  1  PDH             Prephenate dehydrogenase
    3.5e-05   24.3   0.0    7.6e-05   23.2   0.0    1.5  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    0.00016   21.9   0.0    0.00034   20.8   0.0    1.6  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    0.00025   20.5   0.0    0.00045   19.6   0.0    1.3  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
  ------ inclusion threshold ------
       0.14   12.6   0.0       0.38   11.2   0.0    1.7  2  UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family,
       0.21   11.4   0.0        0.4   10.5   0.0    1.5  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
       0.26   10.8   0.0        0.5    9.9   0.0    1.5  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.5   0.0   8.6e-52   2.2e-48       4     253 ..      22     266 ..      19     270 .. 0.93

  Alignments for each domain:
  == domain 1  score: 164.5 bits;  conditional E-value: 8.6e-52
                 HHHHTT--SEEEEE-SSHHHHHHHHHTTSSSEEES-GGGGCCGSEEEE-S-GGGHHHHHHHHHHHS-TT-EEEE--S--CHHHHHHHHHCC..GCEEEE CS
         PDH   4 alrrkgfkvtvigydideekaeaalelglvdeatddieavkeadivvlavPvevilevlkelaphlkedalitDvgsvKekvvreleellkegksfvgg 102
                  lr++g  v v g d d+ ++++++++g+ +  +   +av++ d+v+l+ P   + e+l+ +     +d+++tDvgs+K  ++ ++  +     +fv+g
  KIR63133.1  22 RLRERG--VDVAGWDPDAATRAEGRARGIDFPDAL-ADAVRDRDVVFLCGPLSSLPETLRTVGGLTGPDCVLTDVGSTKGGIAAYAAGHGL-TGRFVPG 116
                 688888..***********************9999.7***************************99***********************99.89***** PP

                 EES---S-SSGGG--TTTTTT-EEEEEE-TTS-HHHHHHHHHHHHH.CT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHHCHHCCCCHHHHCGTCC CS
         PDH 103 hPmaGteksGvdaareelfenavviLtPtektdkealekvkellee.vgarvilmspeeHDrvvavvshlphvvaialaatlkekkndekeirklasgg 200
                 hPmaGte  G  aa+  lf++a ++L+Pt+  +  ++  ++ ll +  gar++ ++p+ HD + a+ shlph++a  laat++e   ++  +  la+g+
  KIR63133.1 117 HPMAGTERAGLTAASPALFDGAAWVLCPTA-AGLDRFRTLAVLLVDvFGARIVPLDPDAHDAAAALASHLPHLLAGTLAATVAEADLRDA-ALGLAAGS 213
                 ******************************.56678887777665517********************************7776666555.9******* PP

                 HHHHHCGGGS-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH CS
         PDH 201 frdvtRiaksnPelwadilleNkeavlealdkfikelkklkelienedaeeLv 253
                 frd tR+++   ++  d+ll+N++++l +ld  +  l++ +++++ +da  L+
  KIR63133.1 214 FRDGTRVVGTPAARTVDMLLNNRDQLLAQLDRVRGLLDRYAAALRGGDAAALA 266
                 *******************************************9999988776 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     3e-08   7.6e-05       3      81 ..       8      80 ..       6      89 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3e-08
                   EEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHC CS
  F420_oxidored  3 giiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlsel 81
                   +++G+G +g +++++l ++g    ++  +   +p+ a+ ++ ++    ++ + ++a+++ dvv+l+ + + ++e+l+ +
     KIR63133.1  8 AVVGTGLIGGSILLRLRERG---VDVA-G--WDPDAATRAEGRARGIDFPDALADAVRDRDVVFLCGPLSSLPETLRTV 80
                   89******************...6766.5..6777777777555544455599*********************99865 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.3e-07   0.00034       3      62 ..       8      67 ..       6      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.3e-07
                   EEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE- CS
  NAD_binding_2  3 gfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitm 62
                   +++G+G +G ++ l+l ++g +va+++ +++   e  a+g++  + ++++v++ dvv+++
     KIR63133.1  8 AVVGTGLIGGSILLRLRERGVDVAGWDPDAATRAEGRARGIDFPDALADAVRDRDVVFLC 67
                   89********************************************************98 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.7e-07   0.00045      38     102 ..       6      71 ..       2      80 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.7e-07
                   EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC.SHHHHHHH-SEEEE-S--S CS
  2-Hacid_dh_C  38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelv.sleellaesDivslhlplt 102
                   + +++G+G IG ++  rl++ g++v ++d+   +++e ++ g+++   l +++++ D+v+l+ pl+
    KIR63133.1   6 RAAVVGTGLIGGSILLRLRERGVDVAGWDPDAATRAEGRARGIDFPdALADAVRDRDVVFLCGPLS 71 
                   679****************************99999899999976559*************99986 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015      0.38      22      73 ..      19      67 ..      17      80 .. 0.91
   2 ?   -3.2   0.0       4.4   1.1e+04      30      48 ..     164     182 ..     160     203 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                    HHHHHHHCTSEEEEE-SSTHHCCCCHHGGBTCCEEES-CHHHHTT-SEEEE- CS
  UDPG_MGDP_dh_C 22 iieeLleegaevkiyDPkvkeeaveaeleekgvevvdsleealkgadaivil 73
                    i+ +L+e+g++v   DP +   a+ +   ++g+ + d l++a+++ d++ ++
      KIR63133.1 19 ILLRLRERGVDVAGWDPDAATRAEGR---ARGIDFPDALADAVRDRDVVFLC 67
                    6779****************999988...79*****************9876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.4
                     TSEEEEE-SSTHHCCCCHH CS
  UDPG_MGDP_dh_C  30 gaevkiyDPkvkeeaveae 48 
                     ga+++  DP + ++a++  
      KIR63133.1 164 GARIVPLDPDAHDAAAALA 182
                     7777888888887776553 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00016       0.4       2      40 ..       7      45 ..       6      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekale 40
                 av+G+G++G +i   + ++g++V   d ++++ +++++
  KIR63133.1  7 AAVVGTGLIGGSILLRLRERGVDVAGWDPDAATRAEGRA 45
                69*************************999988877776 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00019       0.5       2      34 ..       6      38 ..       5      61 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00019
                    EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HH CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevigvDidee 34
                    + +v+G+G +G+   + l e+g++v g D d++
      KIR63133.1  6 RAAVVGTGLIGGSILLRLRERGVDVAGWDPDAA 38
                    568**************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2484.51
//
Query:       KIR63134.1  [L=216]
Description: hypothetical protein TK50_19790 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-29  104.0   0.0    1.6e-29  103.8   0.0    1.0  1  SIMPL     Protein of unknown function (DUF541)


Domain annotation for each model (and alignments):
>> SIMPL  Protein of unknown function (DUF541)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.0   8.9e-34   1.6e-29       1     200 []       7     208 ..       7     208 .. 0.85

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 8.9e-34
       SIMPL   1 ItVtGsaevevapDqatltlsvesegkdaaeakaevaekmnavlealkklg..ikekdiqtsslslkpeysyengknkitgyeasqsltvkfrdldklg 97 
                 + V G+a +ev+p++a++t+++++++++ +++ +++ae+++av+ +l ++   +  +  +t++l+++p+++  + + ++  ++ s   tv+++d+++lg
  KIR63134.1   7 VAVRGEAYREVPPELARFTVTATARDRSREAVLSRLAERAAAVRVLLDAAEpaV--DRRETGDLRVWPQTR--RSGERVVAWHGSVGTTVTVTDFTALG 101
                 579*********************************************633223..3349******99998..46666668***********99999** PP

       SIMPL  98 evldaavka.aneingvsfslsdedelrdeareeAvkdArakAealAkalgvklgkvvsisesgsnpyappapamaaaaaa.......aasaatpfepg 188
                 e++ +++++ + ei g  +sl+ +++++++ar +A++dA a+A+++A+alg+++  ++++ ++g++p+++ a+    aa+a          +++++ p+
  KIR63134.1 102 ELMLRLADQdQVEIAGPWWSLRPDSPAHRDARHAAIADALARAREYAEALGARVTALLELADTGPAPQPMFAR----AAFAgggggesGGPPELDLDPQ 196
                 ***9999998889*********888999********************************9955554433333....3333567787777777777799 PP

       SIMPL 189 eievtasVtvvf 200
                  ++v a V+++f
  KIR63134.1 197 PQSVHAAVEARF 208
                 9********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1915.75
//
Query:       KIR63135.1  [L=215]
Description: nucleoside triphosphate hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-06   25.9   0.2    0.00026   21.1   0.0    2.2  2  AAA_33        AAA domain
    1.7e-05   24.0   0.1    2.5e-05   23.4   0.1    1.2  1  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
    2.9e-05   24.6   0.1    0.00028   21.4   0.1    2.0  1  AAA_18        AAA domain
     0.0025   18.3   0.1      0.024   15.1   0.1    2.2  2  AAA_17        AAA domain
     0.0028   17.4   0.0     0.0069   16.1   0.0    1.6  1  PRK           Phosphoribulokinase / Uridine kinase family
     0.0031   16.8   0.0     0.0047   16.2   0.0    1.4  1  Zeta_toxin    Zeta toxin
      0.008   15.6   0.2      0.013   14.9   0.2    1.3  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
     0.0085   16.5   0.2      0.013   15.8   0.2    1.5  1  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.014   15.8   0.0      0.022   15.2   0.0    1.3  1  AAA           ATPase family associated with various cellular 
      0.017   15.0   0.0      0.024   14.5   0.0    1.2  1  NTPase_1      NTPase
      0.021   15.1   0.0      0.036   14.3   0.0    1.4  1  AAA_22        AAA domain
       0.03   13.5   0.0      0.052   12.7   0.0    1.3  1  NB-ARC        NB-ARC domain
      0.032   14.7   0.0      0.048   14.2   0.0    1.3  1  ABC_tran      ABC transporter
      0.062   13.4   0.0      0.098   12.7   0.0    1.4  1  MMR_HSR1      50S ribosome-binding GTPase
      0.093   13.0   0.1       0.28   11.4   0.0    1.9  2  AAA_28        AAA domain
       0.16   11.9   0.0       0.24   11.3   0.0    1.4  1  NACHT         NACHT domain


Domain annotation for each model (and alignments):
>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.4e-07   0.00026       4      25 ..      30      53 ..      27     102 .. 0.79
   2 ?    2.9   0.0     0.099   1.1e+02      99     124 ..     151     176 ..     141     191 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.4e-07
      AAA_33  4 lvGlpGsGKstlaerllkklg..a 25
                + G+pG+GKstlaer++++lg  a
  KIR63135.1 30 IAGAPGAGKSTLAERVVAELGgvA 53
                57*******************752 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.099
      AAA_33  99 vrivvvetdeetlkeRlakRaangdd 124
                 +++ +++ d e+ ++Rl +R ++ ++
  KIR63135.1 151 HEAWFLDLDAEVRHRRLTARHEAYGR 176
                 6788999*************998753 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   2.2e-08   2.5e-05      21      53 ..      17      49 ..       6      56 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.2e-08
                HHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHH CS
        MeaB 21 rllakaGraqvvGltGvPGaGkstlvealglel 53
                r+la+aG  q +G+ G PGaGkstl e++++el
  KIR63135.1 17 RVLADAGPRQLLGIAGAPGAGKSTLAERVVAEL 49
                68999************************9988 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   2.5e-07   0.00028       2     116 ..      29     173 ..      28     186 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.5e-07
      AAA_18   2 lltGtpGvGKttlakeLskrl.gf.......gvnlrdvakenglllevdpe...aldeskrldedkldklldaleenss.................... 69 
                 +++G+pG+GK+tla+++  +l g+       g++l    ++ +l+    ++   a+d ++++    l + l       +                    
  KIR63135.1  29 GIAGAPGAGKSTLAERVVAELgGVarlvpmdGFHL----AQAELRRLGRDArkgAVDTFDVVGYVSLLRRLH------Rleptsvwapefrrdleepva 117
                 59***************988867788865542222....222222222222122233333333333222222......233345577777777777777 PP

      AAA_18  70 ...aleegknlvidghlaeleseaakdikk......vvLtaspeelleRlekRgye 116
                        +  lv+      l++++ +d ++       +L+++ e++ +Rl +R + 
  KIR63135.1 118 gaiEVPPEVRLVVTEGNYLLLPDYPWDEVRsllheaWFLDLDAEVRHRRLTARHEA 173
                 77767778889999999999999999999999999999999999999999999865 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   2.1e-05     0.024       2      20 ..      32      50 ..      31      56 .. 0.92
   2 ?    0.5   0.0      0.67   7.6e+02     105     130 ..     153     179 ..     131     184 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.1e-05
                E-TTSSHHHHHHHHHHHHT CS
      AAA_17  2 GgPGsGKgtqceklvekyg 20
                G PG+GK+t++e++v ++g
  KIR63135.1 32 GAPGAGKSTLAERVVAELG 50
                9**************9997 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.67
                 EEEEE--HHHHHHHHHHH.TTST-TS- CS
      AAA_17 105 iilleadpeeilerrlkd.rtrgrddd 130
                   +l+ d+e+ ++r+  + +  gr+ +
  KIR63135.1 153 AWFLDLDAEVRHRRLTARhEAYGRSPE 179
                 568999998777777666455777655 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   6.1e-06    0.0069       2     188 ..      28     207 ..      27     211 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.1e-06
         PRK   2 IgvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraekdleleerkrakekevsflspeandfdllyevlkelkegkkvdkpiYsheteeaa 100
                 +g+ag+ GaGk+t+a++++  +g+++     + +d f+  +  + +l  + rk+a   +++        +  l + l +l+   +v  p +  + ee +
  KIR63135.1  28 LGIAGAPGAGKSTLAERVVAELGGVA---RLVPMDGFHLAQAELRRLGRDARKGAV-DTFDV-----VGYVSLLRRLHRLE-PTSVWAPEFRRDLEEPV 116
                 79*********************433...457777777777777777766666665.44444.....45566777788875.45788899988888888 PP

         PRK 101 pdkeeliegadvlviEGlhalyder....vaelldlkiyvdisidlelarklqRDiaeRGrsleavldsilrrkpdyvnyikpqfseadlii 188
                 +   e++ +  ++v EG + l        v++ll    ++d + +++  r   R  ++ Grs e+  +  l + ++  + ++ +  +adl++
  KIR63135.1 117 AGAIEVPPEVRLVVTEGNYLLLPDYpwdeVRSLLHEAWFLDLDAEVRHRRLTAR-HEAYGRSPEQARAWALGSDEANAALVAGTAGRADLVV 207
                 888899999999999996554433334479999999999999999986554444.5566888888877777777777778888877777776 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.2e-06    0.0047      19      49 ..      28      55 ..      10      77 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.2e-06
  Zeta_toxin 19 illgGqpGAGKselaellkdelerqgnvvrl 49
                + ++G+pGAGKs+lae + +el   g+v rl
  KIR63135.1 28 LGIAGAPGAGKSTLAERVVAEL---GGVARL 55
                559******************9...455544 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   1.2e-05     0.013      10      44 ..      12      47 ..       4      55 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
  Mg_chelatase 10 eakraleiaaaGgHnll.lvGppGsGKtmlakrlps 44
                     ra  +a aG  +ll ++G+pG+GK+ la+r+ +
    KIR63135.1 12 LVARARVLADAGPRQLLgIAGAPGAGKSTLAERVVA 47
                  567888999***99999789*************876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   1.2e-05     0.013      20      77 ..      20      84 ..       8     195 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-05
      AAA_16 20 rsgrp.elvllsGesGvGKsslvrellralekd.......ggiflrgkcdqlesaipysalaqala 77
                ++ +p +l+ + G++G GKs+l++++  +l +        g+++++++ ++l+++++    +++++
  KIR63135.1 20 ADAGPrQLLGIAGAPGAGKSTLAERVVAELGGVarlvpmdGFHLAQAELRRLGRDARK-GAVDTFD 84
                3444478899*************99998887776677776677777777777666332.2333333 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   1.9e-05     0.022       3      43 ..      30      65 ..      28      91 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.9e-05
                EESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSSSTTHHH CS
         AAA  3 lyGppGtGKTllakavakelg..vefleisgsellskyvgese 43
                + G pG GK++la+ v+ elg  ++++ ++g  l        +
  KIR63135.1 30 IAGAPGAGKSTLAERVVAELGgvARLVPMDGFHLA-------Q 65
                579*****************888889999888887.......3 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.1e-05     0.024       3      35 ..      29      63 ..      27      86 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.1e-05
                EEE--TTSSHHHHHHHHHHHH.....GGGEEEEEE CS
    NTPase_1  3 fiTGppGvGKtTlvkkvlellks..sgvkvgGfyt 35
                 i G pG GK+Tl ++v+ +l    + v+++Gf  
  KIR63135.1 29 GIAGAPGAGKSTLAERVVAELGGvaRLVPMDGFHL 63
                699*****************954114577778764 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.2e-05     0.036       5      30 ..      25      50 ..      21      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.2e-05
      AAA_22  5 agilvvtGesGtGKTtllrrlleqld 30
                +++l + G +G+GK+tl++r++ +l 
  KIR63135.1 25 RQLLGIAGAPGAGKSTLAERVVAELG 50
                5677899**************99985 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.7e-05     0.052      18      43 ..      25      48 ..      10      57 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.7e-05
                SCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 18 lqslvvalvGmgGvGKttlakqilnk 43
                 q  ++++ G +G GK+tla+ ++ +
  KIR63135.1 25 RQ--LLGIAGAPGAGKSTLAERVVAE 48
                44..99****************9987 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.3e-05     0.048      10      32 ..      24      46 ..      17      76 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.3e-05
                TTSEEEEEESTTSSHHHHHHHHT CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 10 egekvaivGenGaGKStLlklla 32
                + ++++i G  GaGKStL++ + 
  KIR63135.1 24 PRQLLGIAGAPGAGKSTLAERVV 46
                56899*************97655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.7e-05     0.098       3      22 ..      29      48 ..      27     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.7e-05
                EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge 22
                +i+G p +GKStL  + + e
  KIR63135.1 29 GIAGAPGAGKSTLAERVVAE 48
                89************999876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00025      0.28       4      22 ..      30      48 ..      28      78 .. 0.84
   2 ?   -3.0   0.0       6.8   7.7e+03      15      34 ..      91     112 ..      89     116 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00025
      AAA_28  4 itGgestGKTtlleaLaar 22
                i G++++GK+tl+e+  a+
  KIR63135.1 30 IAGAPGAGKSTLAERVVAE 48
                78***********998765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.8
      AAA_28  15 lleaLaar..gypvvpEaarei 34 
                 ll++L++     ++ pE+ r++
  KIR63135.1  91 LLRRLHRLepTSVWAPEFRRDL 112
                 7888888744455779988875 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00022      0.24       4      24 ..      29      49 ..      26      77 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00022
                EEEC-TTTCHHHHHHHHHHHH CS
       NACHT  4 ilqGeaGsGKTtLlqklalaw 24
                 + G++G GK+tL+++++ ++
  KIR63135.1 29 GIAGAPGAGKSTLAERVVAEL 49
                589**************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1626.99
//
Query:       KIR63136.1  [L=876]
Description: hypothetical protein TK50_19800 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.5   0.0       0.31   10.7   0.0    1.3  1  TPR_21    Tetratricopeptide repeat-like domain
       0.78    9.5   0.0       0.78    9.5   0.0    3.4  4  PAP2      PAP2 superfamily


Domain annotation for each model (and alignments):
>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.4e-05      0.31       3      39 ..     169     207 ..     167     218 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.4e-05
      TPR_21   3 wWkengklilvgvvl..alvglaGwqgwqdyqeeqaeeA 39 
                 wW++ + +++vg+v+  +l++l+G  +w++yq e +  A
  KIR63136.1 169 WWRQGAHSLVVGLVIplGLLALLGLLAWRTYQYEAEMPA 207
                 ************996445566677777777776665554 PP

>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.8      0.12   1.1e+03      83     104 ..     291     319 ..     266     322 .. 0.65
   2 ?   -2.5   0.6      0.46   4.1e+03     115     133 ..     499     517 ..     497     519 .. 0.86
   3 ?   -1.9   0.3       0.3   2.7e+03      84     113 ..     606     635 ..     540     672 .. 0.61
   4 ?    9.5   0.0   8.7e-05      0.78      57     105 ..     733     772 ..     694     774 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.12
        PAP2  83 g.......lvllalillllavlvalsRly 104
                 g       +++++l +++l+++val+R +
  KIR63136.1 291 GvraavawPTVALLGAVVLIAVVALGRPW 319
                 24444555778888888888888888865 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.46
        PAP2 115 aGlliGialaalayrlvqk 133
                 +G+l+Gia    + ++v +
  KIR63136.1 499 FGWLLGIAYCSGVLYWVTD 517
                 69******99999999876 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.3
        PAP2  84 lvllalillllavlvalsRlylgvHflsDv 113
                 l+l+ + +++ a+l  l+  ++  H + Dv
  KIR63136.1 606 LRLIGWYAAVGAALATLGSAAALSHVPPDV 635
                 344444444445544444445555555554 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 8.7e-05
        PAP2  57 PSgHsafafalalllalllrrkrkkiglvllalillllavlvalsRlyl 105
                  SgHs+ a+ +a++l  l +r+r++         +++++ ++ l+Rly 
  KIR63136.1 733 LSGHSQGAVICAAVLLQLPARWRRR---------IWFFSYGCQLTRLYG 772
                 7************************.........888888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (876 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 6598.89
//
Query:       KIR63137.1  [L=185]
Description: maltose acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-13   48.8   0.4      1e-12   48.1   0.4    1.3  1  Mac        Maltose acetyltransferase
    9.7e-13   47.3   7.2      9e-09   34.7   4.9    2.8  3  Hexapep    Bacterial transferase hexapeptide (six repeats)
    3.6e-09   36.2   7.0    1.6e-06   27.7   5.3    2.6  2  Hexapep_2  Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Mac  Maltose acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.4   1.7e-16     1e-12       1      53 []       7      58 ..       7      58 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 1.7e-16
                HHHTTS-BETTTSHHHHHHHHHHHHHHHHHHTSTTT-HHHHHHHHHHHSSBES CS
         Mac  1 KMlaGelYdafsDpeLvaeRlrarelcrryNqtrpsdkdeRrelLrellGsvG 53
                +MlaGelY+a  +peL a+   a +   ++N t  +d+++R + LrellGsvG
  KIR63137.1  7 RMLAGELYRA-EGPELLADLDLAARRNEAFNRTSATDPEARLAALRELLGSVG 58
                8*********.67*******************99*****************98 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.54   3.3e+03       4      12 ..      57      65 ..      56      79 .. 0.63
   2 !   11.9   0.0   2.4e-05      0.15       2      17 ..      95     110 ..      93     114 .. 0.71
   3 !   34.7   4.9   1.5e-12     9e-09       2      36 .]     131     165 ..     130     165 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.54
                EETTEEE-T CS
     Hexapep  4 IGsnvlIgp 12
                +G+++ ++p
  KIR63137.1 57 VGEGTSVRP 65
                344444444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.4e-05
                 EEEETTEEE-TTEEEE CS
     Hexapep   2 tvIGsnvlIgpfavig 17 
                 ++IG +v+Igp+++++
  KIR63137.1  95 ITIGADVQIGPNVQLL 110
                 5688888888888776 PP

  == domain 3  score: 34.7 bits;  conditional E-value: 1.5e-12
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 +++G+nv++g +++++++V+IGdn+++gag+v+++
  KIR63137.1 131 ITLGDNVWLGGGVIVLAGVTIGDNTVVGAGAVVNR 165
                 579*****************************985 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00057       3.4       1      13 [.      94     106 ..      94     110 .. 0.88
   2 !   27.7   5.3   2.8e-10   1.6e-06       1      33 [.     130     164 ..     130     165 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00057
                 .EEE-TT-EE-TT CS
   Hexapep_2   1 pviIGdnCliGan 13 
                 p++IG+++ iG+n
  KIR63137.1  94 PITIGADVQIGPN 106
                 7999999999999 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 2.8e-10
                 .EEE-TT-EE-TT-EE..SEEE-TT-EE-TT-EE- CS
   Hexapep_2   1 pviIGdnCliGanagi..GvslGdncvvgaGvvit 33 
                 p++ Gdn+ +G   ++  Gv++Gdn vvgaG v+ 
  KIR63137.1 130 PITLGDNVWLGGGVIVlaGVTIGDNTVVGAGAVVN 164
                 8999***********889***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1258.06
//
Query:       KIR63138.1  [L=319]
Description: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-16   58.5   0.1    1.1e-15   57.4   0.1    1.7  1  THDPS_M    Tetrahydrodipicolinate N-succinyltransferase middl
    1.1e-14   53.9  13.5    1.2e-14   53.8   2.9    3.0  3  Hexapep_2  Hexapeptide repeat of succinyl-transferase
    1.7e-05   24.3  11.0    0.00023   20.7   1.0    3.2  3  Hexapep    Bacterial transferase hexapeptide (six repeats)
     0.0084   16.0   0.0      0.013   15.4   0.0    1.2  1  THDPS_N    Tetrahydrodipicolinate N-succinyltransferase N-ter


Domain annotation for each model (and alignments):
>> THDPS_M  Tetrahydrodipicolinate N-succinyltransferase middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.1   2.5e-19   1.1e-15       1      41 []     111     151 ..     111     151 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 2.5e-19
                 S--EEEETTEEE-HHHHHHHHHHHHHTT------EEESS-B CS
     THDPS_M   1 LpNVaWTnygPvavedfeerrlrlraagrsvtVlsVDKFPR 41 
                 L+NVaWT++gP+ +e ++e r   raagr+++V++VDKFPR
  KIR63138.1 111 LANVAWTSAGPCPPERVDELRVIERAAGRHLAVHGVDKFPR 151
                 89**************************************9 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.2   5.4e+03      23      32 ..     172     181 ..     168     181 .. 0.75
   2 !    4.4   2.9    0.0071        32      16      32 ..     204     221 ..     199     222 .. 0.85
   3 !   53.8   2.9   2.6e-18   1.2e-14       2      34 .]     233     265 ..     232     265 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.2
                 T-EE-TT-EE CS
   Hexapep_2  23 ncvvgaGvvi 32 
                 +++++aG ++
  KIR63138.1 172 GAHLAAGTTV 181
                 6889999765 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0071
                 E.SEEE-TT-EE-TT-EE CS
   Hexapep_2  16 i.GvslGdncvvgaGvvi 32 
                 + Gv +Gd++ +g G  i
  KIR63138.1 204 VqGVVVGDGSDIGGGASI 221
                 36***********99876 PP

  == domain 3  score: 53.8 bits;  conditional E-value: 2.6e-18
                 EEE-TT-EE-TT-EESEEE-TT-EE-TT-EE-S CS
   Hexapep_2   2 viIGdnCliGanagiGvslGdncvvgaGvvita 34 
                 v+IG+++l+Ganag+G+slGd+cvv+aG++ita
  KIR63138.1 233 VRIGERSLVGANAGVGISLGDDCVVEAGCYITA 265
                 9*******************************7 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.55   2.5e+03      13      21 ..     172     180 ..     156     183 .. 0.53
   2 !    8.2   1.7   0.00046       2.1      16      34 ..     203     221 ..     202     223 .. 0.87
   3 !   20.7   1.0   5.2e-08   0.00023       2      35 ..     233     264 ..     232     265 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.55
                 TEEEETTEE CS
     Hexapep  13 faviggnVk 21 
                 +a+++++++
  KIR63138.1 172 GAHLAAGTT 180
                 455555554 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00046
                 EETTEEE-TTEEEETTEEE CS
     Hexapep  16 iggnVkIGdnvkIgagvvi 34 
                 i  +V++Gd++ Ig g+ i
  KIR63138.1 203 IVQGVVVGDGSDIGGGASI 221
                 6679************987 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 5.2e-08
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 ++IG+ +l+g++a +  ++ +Gd+++++ag++i+
  KIR63138.1 233 VRIGERSLVGANAGV--GISLGDDCVVEAGCYIT 264
                 68*************..****************8 PP

>> THDPS_N  Tetrahydrodipicolinate N-succinyltransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.8e-06     0.013     135     168 .]      76     109 ..      66     109 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.8e-06
                 -----SHHHHHHHHHHHHTTSS-TT-S--TTHHH CS
     THDPS_N 135 DkackSvesvYlKLlaLSlgkaplRslnLeGiFg 168
                 D++      +Yl+L +LS + ++  +lnL+GiFg
  KIR63138.1  76 DDPISDAADAYLRLHLLSHRLVRPNELNLDGIFG 109
                 5555566779***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2232.70
//
Query:       KIR63139.1  [L=357]
Description: succinyl-diaminopimelate desuccinylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-21   76.9   0.0    3.3e-21   76.0   0.0    1.4  1  Peptidase_M20  Peptidase family M20/M25/M40
    2.4e-14   53.1   0.0      6e-14   51.9   0.0    1.6  1  M20_dimer      Peptidase dimerisation domain
    8.5e-07   28.9   0.0    0.00012   21.9   0.0    2.2  2  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   5.5e-25   3.3e-21       2     205 ..      70     354 ..      69     355 .. 0.81

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 5.5e-25
                    EEEES-BSSTTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT..THHHHHHHHHH.TTTCESEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx.xxxxxxxx RF
  Peptidase_M20   2 lgsHlDvVpeeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr..gGakallegle.erekvdav 94 
                    l++HlD+Vp    ++   +f +t + + +yG+G++dmk gv+ al+++ +l +     +++++  f  +EE+ +  +G   ++e +  e  ++d+ 
     KIR63139.1  70 LAGHLDTVP---LNN---NFPSTMRGDLMYGCGTSDMKSGVAYALHLAVTLPEP----RYDVTYFFYEAEEIESkyNGLFLVAE-AHpEWLQADF- 153
                    89*******...323...788888889*********************998887....89***********9888777766665.4434444555. PP

                    EEEEEESSSBTCHSTETEEEE........................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxx........................................................................... RF
  Peptidase_M20  95 felhieepgileagklaigvv........................................................................... 115
                     ++++ ep++   +    g                                                                             
     KIR63139.1 154 -AVLL-EPTYGIVEA---GCQgtmrsvvtttgvrahsarswhgvnaihgagevlrrlsayearrvtidgcdyregmnavrisggvagnvvpdrcei 244
                    .4444.477766333...2225566677799999************************************************************** PP

                    ..........................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSCEEEEEES.SSBHTHHHH..TTTEEEEEEESSG.GC CS
                    ..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx..xxxxxxxxxxxxx.xx RF
  Peptidase_M20 116 ..........................kvevelleggapvtlndsplvkalaeaaeelfgekvelivsg.pggtdarff..agiptvmifgpgs.gl 181
                                              + +v+++ +ga++ l+ +p  ++la++     g      + g  g+td + f   gip++  fgpg+  l
     KIR63139.1 245 evnyrfapdrtpaeaeahlrevfdgfELRVTDVAAGAAPGLEAAPAKEFLAAV-----G--AA--PIGkLGWTDVARFaaMGIPAL-NFGPGDpNL 330
                    *************9999888888877777777777777777744444444433.....6..33..445569999999955666877.69***88** PP

                    TTSTTTEEEHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 182 aHspnEyvdledlekgikvlarll 205
                    aH+p+E+v++  +++g+++l+r l
     KIR63139.1 331 AHHPDEHVEIGKIRDGAATLHRWL 354
                    *******************99865 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0     1e-17     6e-14       5     101 ..     170     267 ..     167     271 .. 0.91

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 1e-17
                 EEEEEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC......TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHH CS
   M20_dimer   5 GlaggkitvkgkagHsgapgagaNAieklarllaeledeegdia.eerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeil 101
                 G +   +t++g+ +Hs+   +g+NAi+ + ++l +l + e +    +    r+ +n   i+gG a nv+pd++e +++ R+ p  +p+e+++ ++e++
  KIR63139.1 170 GTMRSVVTTTGVRAHSARSWHGVNAIHGAGEVLRRLSAYEARRVtIDGCDYREGMNAVRISGGVAGNVVPDRCEIEVNYRFAPDRTPAEAEAHLREVF 267
                 66777899*******************************888776555667999**************************************999876 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0     2e-08   0.00012       4      86 ..      58     146 ..      54     162 .. 0.78
   2 !    4.9   0.0    0.0032        19     146     179 ..     306     338 ..     273     351 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2e-08
                    EEESTTCESEEEEEEEE--B-TTT.......TCC..T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSG.SSHHHHHHHH.HHC CS
  Peptidase_M28   4 atlegkatdevlllgAHyDsvgvg.......rgp..ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEa.gllGSkafak.akp 86 
                    a++  +  + +++l++H+D+v+ +       rg+     G  D  sgva  L la +l +    p+++v   f+ aEE  + +   ++++ a+p
     KIR63139.1  58 ARTDLGR-ASRVVLAGHLDTVPLNnnfpstmRGDlmYGCGTSDMKSGVAYALHLAVTLPE----PRYDVTYFFYEAEEIeSKYNGLFLVAeAHP 146
                    4444444.689***********9999999998887666799******************6....9*************7655555555554555 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0032
                    T-STTHHHHTTT--EEEECTSSS-TTTTSTTSSG CS
  Peptidase_M28 146 grsDhspflkagvpvldlaetgfpevyHtprDtl 179
                    g +D + f++ g+p+l++   g p+  H+p+ ++
     KIR63139.1 306 GWTDVARFAAMGIPALNF-GPGDPNLAHHPDEHV 338
                    559***************.888888778877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2374.98
//
Query:       KIR63140.1  [L=181]
Description: decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-34  118.2   0.0    3.1e-34  117.9   0.0    1.1  1  Lysine_decarbox  Possible lysine decarboxylase
    1.8e-20   73.1   0.1    2.1e-20   72.9   0.1    1.1  1  LDcluster4       SLOG cluster4 family
    0.00036   19.8   0.3     0.0005   19.4   0.3    1.2  1  DNA_processg_A   DNA recombination-mediator protein A


Domain annotation for each model (and alignments):
>> Lysine_decarbox  Possible lysine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   0.0   5.2e-38   3.1e-34       1     130 [.      46     174 ..      46     176 .. 0.98

  Alignments for each domain:
  == domain 1  score: 117.9 bits;  conditional E-value: 5.2e-38
                      HHHHHHHHHHTTS-EEEEEECCHHHHHCCTTT-SEEEEESSHHHHHHHHHHHESEEEE-S-SHHHHHHHHHHHHHHHTTSS-S.EEEEEEGGGC CS
  Lysine_decarbox   1 meavakgaleaggrviGiipkillaeeapneevnelvivedmeeRkealveladafvilPGGiGTleElleiltliqlgkhqkvPiillnpkgy 94 
                      m+av +ga  aggr++G+ip++l+  e+++   +el+++++m+ Rk  ++e++daf +lPGG+GTl+El+e++t + l  h+k P++l++ +g+
       KIR63140.1  46 MGAVVDGARSAGGRTVGVIPQSLVDLEVADLASDELLVTASMADRKTLMIEKSDAFLTLPGGLGTLDELFEVWTTATLALHTK-PMVLVDADGF 138
                      9**********************************************************************************.********** PP

                      CHHHHHHHHHHHHTTSS-GGGGGCEEEESSHHHHHH CS
  Lysine_decarbox  95 ydkllefletlveegtisekareliivvddpeevle 130
                      y++ll++l tl++ ++++++ ++l+ v+d+  ++l+
       KIR63140.1 139 YRPLLDWLTTLTDRHFLKPAGQDLLLVADTIPNALT 174
                      *****************************9888776 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.1   3.5e-24   2.1e-20       3     114 ..       3     115 ..       1     140 [. 0.88

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 3.5e-24
  LDcluster4   3 kigVmGsaeteakeealelaeelGrliAkegavlltGgrt.GvmeaaskGakeagGltvGilpassekehsnk.yvdiiiyTGlglagRnlilvlssdv 99 
                  i+V+ +++ + +++ l+la e+Gr+iA++g++l++Gg   G+m a+  Ga++agG tvG++p+s  + ++++ + d +++T +    R ++++  sd+
  KIR63140.1   3 AICVFCASSRTLDQRWLDLAAETGREIARRGHTLVSGGGCvGMMGAVVDGARSAGGRTVGVIPQSLVDLEVADlASDELLVTASMAD-RKTLMIEKSDA 100
                 6999998887788889********************99866***********************88888888856699999988767.*********** PP

  LDcluster4 100 viaiggrsGTlsEia 114
                  ++++g+ GTl E+ 
  KIR63140.1 101 FLTLPGGLGTLDELF 115
                 *************85 PP

>> DNA_processg_A  DNA recombination-mediator protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.3   8.4e-08    0.0005      50     107 ..      11      69 ..       6      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 8.4e-08
  DNA_processg_A  50 tRkaseygkevakklakelaeagitivSGl.AlGiDaaahraaleaggktvavlgtgld 107
                     +R+  ++  ++a+++ +e+a++g+t vSG+  +G+  a   +a +agg+tv+v++++l 
      KIR63140.1  11 SRTLDQRWLDLAAETGREIARRGHTLVSGGgCVGMMGAVVDGARSAGGRTVGVIPQSLV 69 
                     799999999*******************86268**********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1332.22
//
Query:       KIR63141.1  [L=67]
Description: cold-shock protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-31  107.8   0.1    1.9e-31  107.7   0.1    1.0  1  CSD       'Cold-shock' DNA-binding domain
     0.0023   17.6   0.5     0.0032   17.1   0.2    1.5  2  OB_RNB    Ribonuclease B OB domain


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.1   2.1e-35   1.9e-31       3      64 ..       4      65 ..       2      67 .] 0.97

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 2.1e-35
                EEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEE CS
         CSD  3 GtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVt 64
                GtVkwfna+kgfGFIt++ g++dvF H+saiq++g+rsL+e+q+VeFe+++g+kgp+A+n++
  KIR63141.1  4 GTVKWFNADKGFGFITPDGGGADVFAHFSAIQTSGYRSLDENQRVEFEITQGQKGPQAENIR 65
                9***********************************************************97 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   3.6e-07    0.0032       7      25 ..      12      30 ..       4      37 .. 0.85
   2 ?   -2.8   0.0      0.58   5.2e+03      38      48 ..      48      58 ..      46      63 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.6e-07
                SSS-EEEEECT.TEEEEE- CS
      OB_RNB  7 kkGFGFlipdegkeDifip 25
                +kGFGF+ pd+g+ D+f +
  KIR63141.1 12 DKGFGFITPDGGGADVFAH 30
                69**************966 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.58
                EEEEEEESSSE CS
      OB_RNB 38 Vlvritkgdrr 48
                V+ +it+g+++
  KIR63141.1 48 VEFEITQGQKG 58
                66777775554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 528.31
//
Query:       KIR63142.1  [L=470]
Description: RNA helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-43  146.8   0.0    8.6e-43  146.1   0.0    1.3  1  DEAD        DEAD/DEAH box helicase
      1e-25   90.2   0.0    3.3e-25   88.6   0.0    1.9  2  Helicase_C  Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.017   15.1   0.0    1.2  1  ResIII      Type III restriction enzyme, res subunit
      0.016   15.7   2.2      0.057   13.9   0.2    2.5  3  XdhC_C      XdhC Rossmann domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1   0.0   1.9e-46   8.6e-43       1     175 [.      30     198 ..      30     199 .. 0.95

  Alignments for each domain:
  == domain 1  score: 146.1 bits;  conditional E-value: 1.9e-46
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngv 98 
                 ++iQa+++p  l g+dvl++++TGsGKTlaf +p+l++ + +  +  +p al+++PtreLa+q+ + l  +   ++lrv  ++gg +  +q ++l++g+
  KIR63142.1  30 FPIQAATLPDSLAGRDVLGRGRTGSGKTLAFGLPLLHRTAGRrARPGRPLALVLVPTRELAQQVTTALAPYARVLGLRVATVVGGLSLGRQADALRAGA 128
                 58**********************************88876677999**************************************************** PP

                 SEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  99 divvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 ++vv+tpgrl+dl+++g  +l+qv + VlDEad++ d+gf +++ ++l+q+     d     q +++SATl   v+k
  KIR63142.1 129 EVVVATPGRLHDLINRGDARLDQVAVTVLDEADQMADMGFLPQVTKLLEQV---AGD----GQRMLFSATLDGGVDK 198
                 ***************************************************...333....34********977776 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.7   7.8e+03      19      57 ..      80     122 ..      73     130 .. 0.64
   2 !   88.6   0.0   7.5e-29   3.3e-25       2     111 .]     234     340 ..     233     340 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.7
                 EEEEESSHHHHHH.HHHHHHHT....TSTEEEESTTSTHHHHHH CS
  Helicase_C  19 ilifvntidrlek.vklllekk....gikvavlhgelpqneree 57 
                 +l+ v+t++ +++ ++ l        g++va++ g l+   + +
  KIR63142.1  80 ALVLVPTRELAQQvTTALAP-YarvlGLRVATVVGGLSLGRQAD 122
                 68888888866654333311.12455888888888877666555 PP

  == domain 2  score: 88.6 bits;  conditional E-value: 7.5e-29
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH..HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek..vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvt 98 
                 k+++l+++    +++g++++f+ t+ r+++   +ll   kg+++a+lhg  +q +r +ileqf+ g+++ L+atdva+rGi ++++++V+n+d+p++ +
  KIR63142.1 234 KPATLTRIA---AREGRTILFMGTKHRADRlaRQLL--AKGVRAAALHGGKSQPQRTRILEQFRTGQVTALVATDVAARGIHVDGLDMVVNVDPPTEAK 327
                 777788886...899*************97733444..779********************************************************** PP

                 HHHHHHTTSSSTT CS
  Helicase_C  99 syiqriGRtgRag 111
                 +y +r GRt+Rag
  KIR63142.1 328 DYLHRGGRTARAG 340
                 ***********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   3.7e-06     0.017      32     169 ..      51     192 ..      44     194 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.7e-06
                 STTSTHHHHH.HHHHHHH-S........-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--.......-SEEEEEHHHHHHTH.... CS
      ResIII  32 aTGtGKTlva.aklierllkkgkee...kflflvprkslleqtleefkkflseayke....igkkvsgdkkkakekdstnkkilvttiqsldadseeee 122
                  TG+GKTl   + l  r +  + +     +l+lvp+++l +q  ++++ ++     +    +g+   g++ +a    +  ++++v+t  +l+  +    
  KIR63142.1  51 RTGSGKTLAFgLPLLHRTAGRRARPgrpLALVLVPTRELAQQVTTALAPYARVLGLRvatvVGGLSLGRQADA---LRAGAEVVVATPGRLHDLI---- 142
                 5*******998888888888777669999***************99888887776663445555555555555...7789999999999999999.... PP

                 ....HHHTTT-SEEEEETGGGTTS....TTTHHHHHT-.--SEEEEEESS- CS
      ResIII 123 eeseellrdrfdviiiDEaHrlgak...kswreilekf.keavllglTATp 169
                  ++ +++ d+  v + DEa  ++++    +++++le++  +  ++ ++AT+
  KIR63142.1 143 -NRGDARLDQVAVTVLDEADQMADMgflPQVTKLLEQVaGDGQRMLFSATL 192
                 .77888888999999999999999833334444444332335666677775 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.2   8.9e+02       6      29 ..      90     113 ..      90     143 .. 0.70
   2 ?   13.9   0.2   1.3e-05     0.057      22      98 ..     152     275 ..     144     280 .. 0.83
   3 ?   -2.7   0.0       1.8   8.1e+03      14      43 ..     358     388 ..     354     410 .. 0.54

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.2
                 -STTHHHHHHHHHHHTEEEEEEES CS
      XdhC_C   6 aghvaqalarlaaalgfrvtvvdp 29 
                 a++v+ ala++a+ lg+rv  v  
  KIR63142.1  90 AQQVTTALAPYARVLGLRVATVVG 113
                 578999************987755 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.3e-05
                 EEEEEEES-GGGG-GGG-TT-SE..........................................-EEEE--S-H....HHHHHHHHHHSS.S--SEEE CS
      XdhC_C  22 frvtvvdpreefatkerfpeade..........................................tavvvlthdh....klDaealeaalr.kkaayig 73 
                 + vtv+d+ +++a+   +p++++                                          + v ++th+     + D++a  + ++ ++ + i 
  KIR63142.1 152 VAVTVLDEADQMADMGFLPQVTKlleqvagdgqrmlfsatldggvdklvrrfltdpvshsvdpgtATVTAMTHHVlhveAEDKPATLTRIAaREGRTIL 250
                 78999999999998888887777888888889999999999999999999999999999999**87778888876555578888766666425577*** PP

                 ESS-HHHHHHHCTTS.--....... CS
      XdhC_C  74 llGSrkkaarrlerlraaglseeel 98 
                  +G +++a+r+ ++l a+g+ +++l
  KIR63142.1 251 FMGTKHRADRLARQLLAKGVRAAAL 275
                 ***************999*998876 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.8
                 HHHHHHHTEEEEEEES-G.GGG-GGG-TT-S CS
      XdhC_C  14 arlaaalgfrvtvvdpre.efatkerfpead 43 
                  rl+a++g+r    + r+ e a+ +r+ +a+
  KIR63142.1 358 SRLMATAGIRPQATQVRPgEEAALARVTGAR 388
                 5555555555555555554444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3187.79
//
Query:       KIR63143.1  [L=73]
Description: hypothetical protein TK50_19860 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 491.74
//
Query:       KIR63144.1  [L=293]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-13   50.9  14.8    1.5e-13   50.9  14.8    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2      0.13   2.4e+03      48      62 ..      40      54 ..      21      61 .. 0.51
   2 !   50.9  14.8   8.2e-18   1.5e-13       5     183 ..     109     281 ..      88     285 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.13
  BPD_transp_1 48 ilghlilpviillll 62
                   +  l+  +i+++++
    KIR63144.1 40 TWPKLAALAIAIAAW 54
                  222222222222222 PP

  == domain 2  score: 50.9 bits;  conditional E-value: 8.2e-18
  BPD_transp_1   5 Gilaa..lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifr 99 
                   G+l++  ++r ++l+ ++  +i +l+++Ps+++++l +        +  +  +++++++l+aap +   + ++++ +p  l +a r lGa+   ++r
    KIR63144.1 109 GLLLGlaVARFRVLRAAIGSMITALQTMPSIAWFPLAI------LLFELSEKAIFFVVVLGAAPSIANGVISGVDYVPPLLQRAGRNLGARGLNLYR 199
                   555555556*****************************......8999************************************************* PP

  BPD_transp_1 100 kvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   +v+ P+alp i++gl   +++++   ++ e++    G++++ l a+l y   ++ +  +l + i++l++ l +d+   + d+ +
    KIR63144.1 200 YVIAPAALPAIVAGLKQGWAFSWRSLMAGELIV--VGISQTSLGAQLTYARELADAPWLLSTMIVILVVGLGVDAAFGAADQAI 281
                   *********************************..7755555555555555555544444555555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1890.41
//
Query:       KIR63145.1  [L=259]
Description: sulfate ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-26   93.1   0.0    5.1e-26   91.8   0.0    1.7  1  ABC_tran      ABC transporter
    4.1e-05   23.5   0.6      0.074   12.8   0.1    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    0.00027   20.4   0.0        0.1   12.0   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
    0.00041   20.3   0.1    0.00068   19.6   0.1    1.3  1  RsgA_GTPase   RsgA GTPase
      0.002   18.6   0.7     0.0051   17.2   0.7    1.8  1  AAA_16        AAA ATPase domain
     0.0022   17.7   0.0     0.0044   16.7   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
     0.0076   16.5   0.9      0.038   14.3   0.9    2.0  1  AAA_22        AAA domain
  ------ inclusion threshold ------
      0.013   14.3   0.0      0.092   11.5   0.0    2.0  2  ABC_ATPase    Predicted ATPase of the ABC class
      0.014   15.0   1.3      0.046   13.3   1.3    1.9  1  AAA_25        AAA domain
       0.02   14.6   0.0       0.38   10.5   0.0    2.2  2  AAA_30        AAA domain
      0.028   14.5   0.3      0.068   13.3   0.1    1.7  2  MMR_HSR1      50S ribosome-binding GTPase
      0.032   14.5   2.2      0.062   13.5   0.2    2.2  2  AAA_28        AAA domain
      0.036   14.5   0.1       0.15   12.4   0.1    2.1  1  AAA           ATPase family associated with various cellular 
      0.044   13.8   0.2       0.14   12.1   0.1    1.9  2  AAA_5         AAA domain (dynein-related subfamily)
      0.069   13.1   1.4       0.17   11.8   0.1    2.1  2  NACHT         NACHT domain
      0.089   12.7   0.0       0.14   12.0   0.0    1.3  1  Rad17         Rad17 P-loop domain
       0.11   13.1   0.1       0.65   10.5   0.1    2.0  2  AAA_18        AAA domain
        0.2   11.1   0.1       0.34   10.4   0.1    1.3  1  FeoB_N        Ferrous iron transport protein B
       0.22   12.0   0.0       0.33   11.4   0.0    1.2  1  AAA_23        AAA domain
       0.28   11.6   0.1       0.47   10.9   0.1    1.3  1  RNA_helicase  RNA helicase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.0   5.7e-29   5.1e-26       1     136 [.      34     167 ..      34     168 .. 0.93

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 5.7e-29
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 l+ vsl++ +ge v +vG +G+GKStLl+l+agl k   G+i+l               + g ++qe+ lfp ltv+ n             +++e+++
  KIR63145.1  34 LDGVSLDVAPGEFVCLVGASGCGKSTLLNLVAGLDKVSGGRIELG-----------DGVNPGLMFQESALFPWLTVEGNvdvplklrrlpraQRRERVA 121
                 789***************************************433...........58889****************************9888888899 PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++l+++ l e+  ++     ++LSgG++qrvalar+l+ + ++ll+DEp+
  KIR63145.1 122 ELLRTVHLAEFGRKRP----HQLSGGMRQRVALARTLALDTPVLLMDEPF 167
                 9999999999888887....*****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   8.3e-05     0.074       1      24 [.      46      69 ..      46      94 .. 0.74
   2 !    9.2   0.1     0.001      0.94     234     298 ..     137     199 ..     104     202 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.3e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllar 24
                + +l+G+ g+GKS+LL +  +l  
  KIR63145.1 46 FVCLVGASGCGKSTLLNLVAGLDK 69
                679**************9999833 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.001
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ellkelsr.ngaQviltTHS 298
                 +++lS G+++  al+  l+ +    ++ll DEp   L+  ++r +l + l++  + ++  v+++TH+
  KIR63145.1 137 PHQLSGGMRQRVALARTLALDT---PVLLMDEPFGALDA-MTRDILhDELERIWAeRKLTVLFVTHN 199
                 5789999999977777777655...*************9.999999999977777799********8 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0     0.006       5.4      25      42 ..      45      62 ..      35      67 .. 0.85
   2 !   12.0   0.0   0.00012       0.1     123     203 ..     120     202 ..     108     220 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.006
                SEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlld 42
                +f ++vG+ G+GKs ll+
  KIR63145.1 45 EFVCLVGASGCGKSTLLN 62
                6999**********9976 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00012
                 HHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCC CS
                 xxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemle 203
                 v+ell+++++ +       +LSgG ++ vala  +A+     +p+ l+De   aLD++ + ++ + l++   +  + v  +++++ e
  KIR63145.1 120 VAELLRTVHLAEFgrkrphQLSGGMRQRVALARTLALD----TPVLLMDEPFGALDAMTRDILHDELERIWAERKLTVLFVTHNVRE 202
                 55555555554323333339***************996....8********************998886544433333333333333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   7.6e-07   0.00068      99     127 ..      44      72 ..      23      81 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 7.6e-07
                  TSEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelelkt 127
                  +++++lvG SG GKStL+n +++ ++++ 
   KIR63145.1  44 GEFVCLVGASGCGKSTLLNLVAGLDKVSG 72 
                  5889***************9998766655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.7   5.7e-06    0.0051      25      50 ..      45      69 ..      32     196 .. 0.51

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.7e-06
      AAA_16 25 elvllsGesGvGKsslvrellralek 50
                e v l+G+sG+GKs+l++ ++  l k
  KIR63145.1 45 EFVCLVGASGCGKSTLLNLVAG-LDK 69
                7899**************9984.333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     5e-06    0.0044      13      39 ..      35      61 ..      32      67 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5e-06
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                dg ++++ + +++ l+G+sG GKSTll
  KIR63145.1 35 DGVSLDVAPGEFVCLVGASGCGKSTLL 61
                778899999999**************8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.9   4.2e-05     0.038       6      99 ..      45     165 ..      42     203 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.2e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.........................erpevvfvtlpsst..sskdllrellralglelkaerlssee 77 
                  +++++G sG+GK+tll+ ++  ++      e                          ++++ +  l       +++   ellr ++l   + r++ ++
  KIR63145.1  45 EFVCLVGASGCGKSTLLNLVAGLDKVSGGRIElgdgvnpglmfqesalfpwltvegnVDVPLKLRRL---PraQRRERVAELLRTVHLAEFG-RKRPHQ 139
                 5889*************99988775444444467777777776666665555443211111112222...1224666666666666666666.666666 PP

      AAA_22  78 llealeqalrarav....ielliiDE 99 
                 l   ++q +  +++    +++l+ DE
  KIR63145.1 140 LSGGMRQRVALARTlaldTPVLLMDE 165
                 66555555555555566777777776 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.26   2.4e+02     247     262 ..      47      62 ..      39      72 .. 0.81
   2 ?   11.5   0.0    0.0001     0.092     324     383 ..     141     203 ..     136     223 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.26
                 EEEEE-TTSSHHHHHH CS
  ABC_ATPase 247 tlIvGggfhGKsTLLe 262
                 + +vG    GKsTLL+
  KIR63145.1  47 VCLVGASGCGKSTLLN 62 
                 567999999******8 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.0001
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHH...S-GGG--B--HHHCHHHH CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmirDermqel...vskekepitplvdrvrel 383
                 SG + q +++++ l +++++lL+DE   A   m rD + +el    +++k ++  +++ vre 
  KIR63145.1 141 SGGMRQRVALARTLALDTPVLLMDEPFGALDAMTRDILHDELeriWAERKLTVLFVTHNVREA 203
                 9***********************************887665111555555555555666655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.3   5.2e-05     0.046      31      97 ..      42     115 ..      37     204 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.2e-05
      AAA_25  31 pagelallaGapgtGKttlaldla.l.avatGkpwlg......pvapeqgkVlyvsaEdsedelrrRlravgeal 97 
                 + ge++ l+Ga+g+GK+tl+  +a l +v+ G+  lg       +  e +   ++  E++  +++ +lr++ +a+
  KIR63145.1  42 APGEFVCLVGASGCGKSTLLNLVAgLdKVSGGRIELGdgvnpgLMFQESALFPWLTVEGNV-DVPLKLRRLPRAQ 115
                 469***************9744431214445555555655554222355555566666666.6666666666555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00042      0.38      19      49 ..      45      75 ..      39      78 .. 0.87
   2 ?    1.7   0.0       0.2   1.8e+02      37      72 ..     181     216 ..     177     253 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
      AAA_30 19 rvavltGpAGtGKttalkalreaweaaggrv 49
                 +++l+G+ G GK+t+l+ ++ + + +ggr+
  KIR63145.1 45 EFVCLVGASGCGKSTLLNLVAGLDKVSGGRI 75
                4789****************99999888877 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.2
      AAA_30  37 alreaweaaggrviglAptgkaAkvLaeelgieast 72 
                 +l+++w++++ +v+ ++++ + A++La+ + + +s+
  KIR63145.1 181 ELERIWAERKLTVLFVTHNVREAARLADRIILLSSR 216
                 67899*********************9877655555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   7.6e-05     0.068       2      21 ..      47      66 ..      46      76 .. 0.86
   2 ?   -2.5   0.0       6.1   5.4e+03      37      37 ..     178     178 ..     144     212 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.6e-05
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                v++vG +  GKStL+n   g
  KIR63145.1 47 VCLVGASGCGKSTLLNLVAG 66
                89**************8765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.1
                 E CS
    MMR_HSR1  37 n 37 
                  
  KIR63145.1 178 L 178
                 1 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2     7e-05     0.062       2      20 ..      47      65 ..      46      81 .. 0.89
   2 ?    0.3   0.1      0.81   7.3e+02      92     117 ..     173     199 ..     108     209 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7e-05
      AAA_28  2 ivitGgestGKTtlleaLa 20
                ++++G++++GK+tll+  a
  KIR63145.1 47 VCLVGASGCGKSTLLNLVA 65
                89*************9876 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.81
      AAA_28  92 ygge.aeaeleaaarekrydlvfllpp 117
                    +  + ele++++e++ +  f++ +
  KIR63145.1 173 MTRDiLHDELERIWAERKLTVLFVTHN 199
                 223333445666666655555555554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00017      0.15       1      66 [.      47     165 ..      47     224 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00017
                 EEEESSTTSSHHHHHHHHHHHHTHE....................................................EEEEETTTCSSSSTTHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgve....................................................fleisgsellskyvgesekkir 47 
                 v+l+G  G+GK++l + va   +v+                                                    + ++ ++e+  k   + +  +r
  KIR63145.1  47 VCLVGASGCGKSTLLNLVAGLDKVSggrielgdgvnpglmfqesalfpwltvegnvdvplklrrlpraqrrervaelLRTVHLAEFGRKRPHQLSGGMR 145
                 79*****************87544433333333333444444444444444445555555555555555555555544445555555555555555566 PP

                 HHHHHHHHTS.TSEEEEEET CS
         AAA  48 elfkeakeka.kpsilfiDE 66 
                 + ++ a++ a ++ +l++DE
  KIR63145.1 146 QRVALARTLAlDTPVLLMDE 165
                 66666666665556666666 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00016      0.14       2      20 ..      47      65 ..      46      71 .. 0.90
   2 ?   -2.0   0.0       3.6   3.2e+03      32      64 ..     173     205 ..     171     222 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00016
                EEEE--SSSSHHHHHHHGG CS
       AAA_5  2 vlLvGppGtgKselaerla 20
                v+LvG++G+gKs+l   +a
  KIR63145.1 47 VCLVGASGCGKSTLLNLVA 65
                8*************98877 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.6
                 --TT--HHHHH--B--.........-------- CS
       AAA_5  32 ltrdtteedlkgrreikngttslvdsplvraar 64 
                 +trd+  ++l   +  ++ t  +v   + +aar
  KIR63145.1 173 MTRDILHDELERIWAERKLTVLFVTHNVREAAR 205
                 667777777777777666666666666666666 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00019      0.17       3      20 ..      47      64 ..      45      71 .. 0.87
   2 ?   -0.0   0.2      0.81   7.3e+02      40      72 ..     106     143 ..      99     219 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
                EEEEC-TTTCHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkl 20
                v+l G++G+GK+tLl  +
  KIR63145.1 47 VCLVGASGCGKSTLLNLV 64
                89************9765 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.81
                 EETTTTTTS-...-HCHHHCCCCTS--SSS-C.....C CS
       NACHT  40 lslrelsrsgnarsladllfsqlpepaapvse.....v 72 
                 l+lr+l+r ++  ++a+ll+ + +++ ++ ++     +
  KIR63145.1 106 LKLRRLPRAQRRERVAELLRTVHLAEFGRKRPhqlsgG 143
                 66777777777778888887777666655555444442 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00016      0.14      34      66 ..      33      65 ..      25      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00016
       Rad17 34 wlkadvLesrkkriLLisGPsGCgkstvvkvLs 66
                +l+  +L+ ++ + + + G sGCgkst ++ ++
  KIR63145.1 33 ALDGVSLDVAPGEFVCLVGASGCGKSTLLNLVA 65
                678889999999999************998765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00073      0.65       1      19 [.      47      65 ..      47      93 .. 0.83
   2 ?   -0.0   0.0       1.4   1.2e+03      43      99 ..     165     213 ..     134     221 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00073
      AAA_18  1 IlltGtpGvGKttlakeLs 19
                ++l G++G+GK+tl + ++
  KIR63145.1 47 VCLVGASGCGKSTLLNLVA 65
                79************98875 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.4
      AAA_18  43 pealdeskrldedkldklldaleenssaleegknlvidghlaeleseaakdikkvvL 99 
                 ++    +  ld + +d l+d+le++   ++e k  v+   ++  e +++ d+  + L
  KIR63145.1 165 EP----FGALDAMTRDILHDELERI---WAERKLTVLFVTHNVREAARLADRI-ILL 213
                 33....6778888888899999997...6677777777666666666666666.655 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00038      0.34       3      25 ..      47      69 ..      45      73 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00038
                EEEEESTTSSHHHHHHHHHTTSE CS
      FeoB_N  3 valvGnpnvGkttlfnaltgakq 25
                v+lvG   +Gk+tl+n ++g ++
  KIR63145.1 47 VCLVGASGCGKSTLLNLVAGLDK 69
                78****************99865 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00036      0.33      21      37 ..      46      62 ..      30      66 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00036
      AAA_23 21 ltlItGpNGaGKTTild 37
                +++++G  G+GK+T+l+
  KIR63145.1 46 FVCLVGASGCGKSTLLN 62
                689************98 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00052      0.47       1      17 [.      47      63 ..      47      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00052
  RNA_helicase  1 iwlyGpsgeGKStlake 17
                  ++l+G+sg+GKStl + 
    KIR63145.1 47 VCLVGASGCGKSTLLNL 63
                  689***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 1659.68
//
Query:       KIR63146.1  [L=354]
Description: sulfonate ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-38  131.3   0.1    6.7e-38  130.8   0.1    1.2  1  NMT1_2          NMT1-like family
    5.4e-13   49.4   0.2    7.2e-13   49.0   0.2    1.2  1  NMT1            NMT1/THI5 like
    2.2e-10   40.6   0.2    1.8e-09   37.6   0.2    2.0  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
    2.4e-06   27.1   0.0    0.00089   18.7   0.0    2.4  2  SBP_bac_3       Bacterial extracellular solute-binding protei


Domain annotation for each model (and alignments):
>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   0.1   1.5e-41   6.7e-38       5     248 ..      42     276 ..      38     282 .. 0.92

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 1.5e-41
      NMT1_2   5 keqlklGfialtdaaplvvakekglfake...GltvelekqaswaelrdkllagelDaahv.ltpapllidlGiggakadmkvlaslnlnGqaitlsnk 99 
                 + +l+lG+++++++ap vv  ekg+fa++   ++++e++++++++++ +++ +g lDa ++   p + ++++ +   ++ ++v+   ++ G a++++  
  KIR63146.1  42 PVTLRLGYFPNITHAPAVVGVEKGIFAEKlggDVKLETKTFNAGPAAIEAIFSGALDATYIgPNPTVNAFSKSK---GEAVRVISGAASGGVALVVK-- 135
                 6789***********************999766778***********************************999...89*****************8.. PP

      NMT1_2 100 lkdkkvsdakalkdlvakkkaskplkiavtfpgsthdlllrywLaaaGldp....eadvklvvvpppqmvanlkagtidgfcvgePwnaqavaegiGvt 194
                       ++  ++++l       k+ kia+++ g+t+d++lrywL+++Gl        dvk+v   ++q+v+++++gtidg++v+eP+ +++v+ g    
  KIR63146.1 136 ------PEITSVEQL-------KGKKIATPQLGNTQDVALRYWLREKGLTAtkegGGDVKVVPQENAQTVETFNSGTIDGAWVPEPFVSRLVNAGG-KV 220
                 ......667777777.......7889*************************999999***********************************9986.99 PP

      NMT1_2 195 altsqelwkdhPekv..lgvredfveknpntaralvkalleAtkwldakkenraea 248
                 ++++++lw+d    +  l v+ +f++++p+++++lv+  ++A ++++ k++  ++a
  KIR63146.1 221 LVDERDLWPDKKFVItnLIVSTKFLKAHPDVVKKLVEGQVAANEFVNTKPDESQQA 276
                 99********8544466******************************966655544 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.2   1.6e-16   7.2e-13       1     215 [.      52     272 ..      52     273 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 1.6e-16
                 -GGGHHHHHHHHTTHHHHT...TEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHH..HHHHTT--EEEEEEEE-S--EEEEEECCC--SSGGGGTTS CS
        NMT1   1 npnhaglyvAkekGYFkee...GldVeivepadpsdatelvasgkadfgvsyqesll..aarakglpvvsvaallqeplsglivlkdsgikspkDLkGk 94 
                 n  ha+ +v+ ekG F+e+   ++++e +  +    a+e++ sg+ d     ++ ++    ++kg  v+ +     +   +l+v+ +  i+s++ LkGk
  KIR63146.1  52 NITHAPAVVGVEKGIFAEKlggDVKLETKTFNAGPAAIEAIFSGALDATYIGPNPTVnaFSKSKGEAVRVIS-GAASGGVALVVKPE--ITSVEQLKGK 147
                 678**************9775467777777789999************888887777445566777766555.55577777777776..********** PP

                 EEEE-S.-TTHHHHHHHHHHHTT--GG.....G-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT-----SEEEEEEHHH CS
        NMT1  95 rigyvg.spfekallkallakdggdps.....dvtlvnvggtslakalltgkvDaaiggyenwegvelesegkelrifaladlgvpdyyslvlitnekl 187
                 +i++++ ++ ++  l+  l+++g+++      dv++v+ ++ ++++ + +g++D a+ + e   + +l + g ++ +++ + +   ++  + li+++k+
  KIR63146.1 148 KIATPQlGNTQDVALRYWLREKGLTATkegggDVKVVPQENAQTVETFNSGTIDGAW-VPEP-FVSRLVNAGGKVLVDERDLWPDKKFVITNLIVSTKF 244
                 ******8888999***********654233448************************.5555.45667799999999988888878************* PP

                 HHH-HHHHHHHHHHHHHHHHHHHHSHHH CS
        NMT1 188 lkenpelvkkFlrAlkkGyeyalahPee 215
                 lk++p+ vkk+++    + e++  +P+e
  KIR63146.1 245 LKAHPDVVKKLVEGQVAANEFVNTKPDE 272
                 ***************9999999999998 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.2   3.9e-13   1.8e-09      25     206 ..      69     260 ..      65     326 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 3.9e-13
                     HHH..SSEEEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHS-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHHGG-EEEE--TT-TT CS
  Phosphonate-bd  25 eel..GvevelvvatdyaavvealragqvDiaflgplayvqardqagveplatrvrsdGsasyrsviivradsdiqsledLkgktiafvspsSts 117
                     e+l  +v+ e+++++   a++ea+ +g +D  ++gp ++v+a  +++ e++  rv  +G+as   +++v+++  i+s+e+Lkgk+ia ++   t 
      KIR63146.1  69 EKLggDVKLETKTFNAGPAAIEAIFSGALDATYIGPNPTVNAFSKSKGEAV--RVI-SGAASGGVALVVKPE--ITSVEQLKGKKIATPQLGNTQ 158
                     667446678888999999*************************99988865..665.68***9999999996..********************9 PP

                     TTHHHHHHTCCCCT--HHH....HSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHH...........HH-HHHH.TTEEEEEEEEEEE--EE CS
  Phosphonate-bd 118 GylvpaalLvkeagldped....dfsevfsgshdaavlavlsgdadaaavsadaledlv...........aegpedk.delrviassppipndpv 196
                       ++ +++L +e+gl+ ++    d + v  +   ++v+   sg++d a v++ ++ +lv           + +p++k   +++i s++ + ++p 
      KIR63146.1 159 -DVALRYWL-REKGLTATKegggDVKVV-PQENAQTVETFNSGTIDGAWVPEPFVSRLVnaggkvlvderDLWPDKKfVITNLIVSTKFLKAHPD 250
                     .********.8*****997443344444.346788899**************9999999665555555443333333444555788888888888 PP

                     EEETTS-HHH CS
  Phosphonate-bd 197 vvrkelseel 206
                     vv+k ++ ++
      KIR63146.1 251 VVKKLVEGQV 260
                     8877666554 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00069       3.1     112     185 ..      59     128 ..      50     137 .. 0.76
   2 !   18.7   0.0     2e-07   0.00089      86     177 ..     129     224 ..     125     258 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00069
                 EEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSE.EEEEHHHHHHHHHHCCGCCEEEEECGGCEC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 112 kvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvda.vvadspvlaylvkknpdkkvvlveeplsse 185
                  vgv +g  ae+l       + e+++f+  ++a++a+ +g  da +++ +p+++ + k ++++ +v+     +s 
  KIR63146.1  59 VVGVEKGIFAEKLGGD---VKLETKTFNAGPAAIEAIFSGALDAtYIGPNPTVNAFSKSKGEAVRVI--SGAASG 128
                 5899999999844333...2678899*****************955889999999999999999888..333344 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 2e-07
                 EEEEEEEETTSHGTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC..........TSEEEEE.SSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  86 gqvllvrkkdaskissiksladLkgkkvgvqagstaeellkeelkk..........gaeivef.dtleealqaLkngrvdavvadspvlaylvkknpdk 173
                 g++l+v+        +i+s+++Lkgkk+++ +  ++++ + +++ +          g +++++ + +++ ++  ++g +d + + +p +  lv+  ++ 
  KIR63146.1 129 GVALVVK-P------EITSVEQLKGKKIATPQLGNTQDVALRYWLRekgltatkegGGDVKVVpQENAQTVETFNSGTIDGAWVPEPFVSRLVNAGGKV 220
                 5666666.3......599999*********9998888886665555688888889966777664777777999*******************9999887 PP

                 CEEE CS
                 xxxx RF
   SBP_bac_3 174 kvvl 177
                  v +
  KIR63146.1 221 LVDE 224
                 7766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2648.32
//
Query:       KIR63147.1  [L=436]
Description: peptidase M16 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-25   88.6   0.0    7.2e-25   88.1   0.0    1.3  1  Peptidase_M16_C  Peptidase M16 inactive domain
    7.6e-19   68.2   0.0    1.2e-18   67.5   0.0    1.2  1  Peptidase_M16    Insulinase (Peptidase family M16)


Domain annotation for each model (and alignments):
>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.0   8.1e-29   7.2e-25       2     181 ..     181     365 ..     180     367 .. 0.93

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 8.1e-29
                      H-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECT.CTHT CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpsk.ende 94 
                       t++d  +f++++Y + n+vlai Gdvd  e+ +l++++fgd++a+   pa++++ + +p    +++    +   + + ++ a+++p+  ++  
       KIR63147.1 181 ATVDDAADFFRRYYASGNAVLAISGDVDVAEATALVQRHFGDVPAR---PAPDRPDFAEPDLTAERRSSYTDALAPLPAVASAWRVPDPiTDFA 271
                      699*****************************************98...88888888888888888888888888************998999* PP

                      THHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEE..EEEES....SCEEEEEEEEEECT.THHHHHHHHHHHHHHHHHHTS-HHHHHHHHH CS
  Peptidase_M16_C  95 ddlalavlntlLgggmesrLytnlrekeglaysvsaf..ndsyr....dsglfgisatadpe.nveevvevilkelrklkkeglteeelerakn 181
                      d+l+ +vl+++L +g  srL  +l ++   ++s + +  ++ +     d + + ++a + p+ +v++v+  + +el++l+++g+t+ el r ++
       KIR63147.1 272 DYLPYVVLAEVLTDGDASRLVERLVQRDRAVTSLGGYvgFMGDPfdvrDPTALLLQAHLPPGgDVDKVLRTVDEELDRLATDGPTDGELARTQA 365
                      ***********************************99655555599********************************************9986 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   1.3e-22   1.2e-18       2     118 ..      26     142 ..      25     147 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 1.3e-22
                    EEEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHS CS
  Peptidase_M16   2 valesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfka 97 
                    v+l  d +a+   v++v d+G r+ep+   G AHl eh++f+g+++ ++ +  + ++  Gg++n +t  ++t Yy +++s++le al + ad ++ 
     KIR63147.1  26 VVLTPDRSAPVIGVAVVYDVGIRSEPEGRTGFAHLFEHLMFQGSENLEKLAHFRHVQGAGGTFNGSTHHDYTDYYETLPSNALERALFLEADRMRG 121
                    677777799999************************************************************************************ PP

                    BTTSHHHHHHHHHHHHHHHHH CS
  Peptidase_M16  98 plleesevererkvvekevea 118
                    p+l+e+++  +++vv++e+ +
     KIR63147.1 122 PRLTEENLRNQVDVVKEEIRV 142
                    *****************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3138.63
//
Query:       KIR63148.1  [L=446]
Description: peptidase M16 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-21   76.8   0.0      7e-19   68.5   0.0    2.3  2  Peptidase_M16_C  Peptidase M16 inactive domain
    1.6e-07   31.4   0.0    2.6e-07   30.7   0.0    1.3  1  Peptidase_M16    Insulinase (Peptidase family M16)
  ------ inclusion threshold ------
       0.31   11.3   7.1        1.6    9.1   2.0    2.7  2  acVLRF1          Actinobacteria/chloroflexi VLRF1 release fac


Domain annotation for each model (and alignments):
>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   1.2e-22     7e-19       6     181 ..     187     357 ..     183     358 .. 0.91
   2 !    5.9   0.0     0.002        12       2      28 ..     400     426 ..     399     431 .. 0.91

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 1.2e-22
                      HHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSS.SSEEEEEEEEEECTCTHTTHHH CS
  Peptidase_M16_C   6 dlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkklde.eqahlslafegpskendeddla 98 
                       l+  + +  +p+ +vl++vGdv +e++++ +ek +  ++      ++ ++ p+  ++l ++p +l +++   q++l +a++++++ +++d++a
       KIR63148.1 187 ALRRLHAERVHPADAVLVLVGDVQPERALDAAEKALAAWNG----AGHTAELPPA-PPLEPGPLLLVDRPGsVQSSLRIALPAVPR-THPDHAA 274
                      5889999*********************************7....7788877777.6777888888888777**************.******* PP

                      HHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEE.EEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH CS
  Peptidase_M16_C  99 lavlntlLgggmesrLytnlrekeglaysvsaf.ndsyrdsglfgisatadpenveevvevilkelrklkkeglteeelerakn 181
                      l++ n l+gg  +sr   n+re +g +y+  +   +     ++++ +a + +e + +++  +  el +l++  + ++ele+a++
       KIR63148.1 275 LQLANLLFGGYFSSRWVENIREDKGYTYGPHSLvEH-SVAGSVLVAGAEVATEVTGPALLETTYELGRLATLPPKPDELEQARQ 357
                      ********************************9444.335788**************************************986 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.002
                      H-HHHHHHHHHHHSSGGGEEEEEEESS CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdv 28 
                       t++d+ e  +++  p+++v ++ Gd 
       KIR63148.1 400 ATVDDVAEVAQRYLAPARAVTVVLGDA 426
                      699**********************85 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   4.4e-11   2.6e-07      39     143 ..      68     172 ..      53     178 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 4.4e-11
                    HHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHSBTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH CS
  Peptidase_M16  39 hmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfkaplleesevererkvvekeveavdaepekvveenlhaa 134
                      +++gT+  +s ++a+el++ Gg l+A ++ ++ +     l + l+ +l++ladv++ ++   +ev +er+ +  ++++++++p ++++ +l + 
     KIR63148.1  68 QTMLSGTQSMTSVQIAAELQAVGGGLSAGIDPDRLMLSGAGLVTGLDRMLEILADVLTGATYPGQEVGTERDRLVDRIQVAQSQPAHLARTALLRR 163
                    56899********************************************************************************99999999999 PP

                    HTTTSGGGS CS
  Peptidase_M16 135 ayrekalgr 143
                     y  ++++ 
     KIR63148.1 164 VYGTHPYAV 172
                    998877765 PP

>> acVLRF1  Actinobacteria/chloroflexi VLRF1 release factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2    0.0083        50      59      94 ..     180     220 ..     173     239 .. 0.66
   2 ?    9.1   2.0   0.00026       1.6      55     101 ..     398     442 ..     391     446 .] 0.81

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0083
     acVLRF1  59 leavaeaaarllaeesae.....vvlgGdrslvaevledar 94 
                 ++av+ aa r l++e+ +     +vl+Gd +  +++ + ++
  KIR63148.1 180 VRAVRPAALRRLHAERVHpadavLVLVGDVQPERALDAAEK 220
                 55666555555533333335566******999888887733 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00026
     acVLRF1  55 adalleavaeaaarllaeesaevvlgGdrslvaevledarlaplatl 101
                 a+a++++vae a+r la+++a  v+ Gd + va  l+   la ++t 
  KIR63148.1 398 AKATVDDVAEVAQRYLAPARAVTVVLGDAERVAPALSA--LALVRTE 442
                 7899******************99****9999877777..4455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3206.42
//
Query:       KIR63149.1  [L=81]
Description: hypothetical protein TK50_19905 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 627.42
//
Query:       KIR63150.1  [L=79]
Description: hypothetical protein TK50_19910 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-19   68.7   0.1    3.8e-19   68.5   0.1    1.1  1  DUF397    Domain of unknown function (DUF397)
  ------ inclusion threshold ------
       0.03   14.0   0.3      0.053   13.2   0.3    1.4  1  FixS      Cytochrome oxidase maturation protein cbb3-type


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.1   4.2e-23   3.8e-19       2      54 .]      19      72 ..      18      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 4.2e-23
      DUF397  2 tWrKSsySgggggnCVEvaalpd...avavRDSkdpdgpvLtftpaewaaFlagvk 54
                 Wr S++S+ +  nCVEva lp+   ava+RDSkd+ gpvL f++a wa+F+ag k
  KIR63150.1 19 PWRTSTRSQTS--NCVEVAPLPGgpaAVALRDSKDRGGPVLLFDRAGWAGFIAGTK 72
                6*******977..6*********9955**************************976 PP

>> FixS  Cytochrome oxidase maturation protein cbb3-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   5.9e-06     0.053      16      31 ..      62      77 ..      56      77 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.9e-06
        FixS 16 lalaaFlWavksGQFD 31
                +++a+F+ + k+GQFD
  KIR63150.1 62 AGWAGFIAGTKNGQFD 77
                689************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 624.29
//
Query:       KIR63151.1  [L=325]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-18   65.6   4.1    3.7e-18   65.6   4.1    2.7  2  HTH_31    Helix-turn-helix domain
    4.3e-07   29.9   0.0    1.1e-06   28.5   0.0    1.8  1  HTH_3     Helix-turn-helix
    1.9e-05   24.6   0.0    6.4e-05   22.9   0.0    1.9  2  HTH_19    Helix-turn-helix domain
  ------ inclusion threshold ------
       0.03   14.6   0.0       0.11   12.8   0.0    1.9  1  HTH_18    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   4.1   8.3e-22   3.7e-18       1      64 []      14      77 ..      14      77 .. 0.98
   2 ?    1.1   0.3      0.12   5.2e+02      38      57 ..     188     207 ..     157     216 .. 0.73

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 8.3e-22
      HTH_31  1 aLGalLralReraGLsqeevAerlgv.sestlsrlEqGrrgrpspavlealaralgldpaerael 64
                +LG +Lr lRe+aGL+ ++v +r+g+ s+s+lsrlE+Gr  rp pa+++al++++g+++a+r+el
  KIR63151.1 14 RLGLELRKLREAAGLTGDQVIARVGWaSASKLSRLENGRS-RPDPADVAALLDLFGVTEAQRDEL 77
                69***********************99*************.9*********************97 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.12
      HTH_31  38 rrgrpspavlealaralgld 57 
                 rr  p++   e+la++++l 
  KIR63151.1 188 RRAGPPEVLREQLAQLCDLA 207
                 44335555567788888774 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   2.6e-10   1.1e-06       1      52 [.      19      71 ..      19      73 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 2.6e-10
                HHHHHHHTTHHHHHHHHHHT.SSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEH CS
       HTH_3  1 lkelRkqlglsqeeLAeklG.vsrstisriEnGernPsletlkklakaLgvsl 52
                l++lR+++gl+  ++ +++G  s s +sr+EnG+++P++  + +l++ +gv+ 
  KIR63151.1 19 LRKLREAAGLTGDQVIARVGwASASKLSRLENGRSRPDPADVAALLDLFGVTE 71
                89**********777777777******************************96 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.4e-08   6.4e-05       4      56 ..      19      71 ..      17      84 .. 0.89
   2 ?   -2.8   0.0       1.5   6.8e+03      31      48 ..     248     267 ..     247     272 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.4e-08
      HTH_19  4 LkeaReelgltqeelaerlgis.rskisaiEngkkdvpsaelllkiaealgidl 56
                L+++Re +glt +++  r+g    sk+s +Eng++  p++ ++ +++ ++g+++
  KIR63151.1 19 LRKLREAAGLTGDQVIARVGWAsASKLSRLENGRS-RPDPADVAALLDLFGVTE 71
                8********************99***********9.***999988888888873 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.5
      HTH_19  31 aiEng..kkdvpsaelllki 48 
                 aiE+g  +   ++a++l+++
  KIR63151.1 248 AIEGGftNAMSTEANTLNAY 267
                 78888876657778888654 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.4e-05      0.11      23      65 ..       5      47 ..       4      49 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.4e-05
                -HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHH CS
      HTH_18 23 tpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsr 65
                 p+ +lrr+Rl    r L+e++gl+ +++ +++G++++s +sr
  KIR63151.1  5 GPSPVLRRRRLGLELRKLREAAGLTGDQVIARVGWASASKLSR 47
                68889**************999******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2567.13
//
Query:       KIR63152.1  [L=422]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-23   82.7  57.6    9.5e-16   57.7  34.1    2.0  2  MFS_1       Major Facilitator Superfamily
    7.6e-09   34.6  23.2      2e-05   23.4   3.8    2.5  3  MFS_2       MFS/sugar transport protein
    4.4e-05   22.1  34.1    5.8e-05   21.7  34.1    1.1  1  MFS_3       Transmembrane secretion effector
    0.00054   18.9  14.6      0.022   13.6   3.4    2.3  2  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7  34.1   2.1e-19   9.5e-16       2     272 ..      14     277 ..      12     281 .. 0.84
   2 !   36.5  25.9   5.6e-13   2.5e-09       5     184 ..     226     398 ..     223     418 .. 0.85

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 2.1e-19
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyal.gaavaslplGrlsdrfGrrrvlllglllfalglllllfa....sslwlllvlrvlq 95 
                 + a++ s++a sil++al  +  +dl+ s   +g   t++a+ + +v+++++G+ +dr+ rr++++++ l++a+  l +lf+      +w+++v+  l 
  KIR63152.1  14 FGALLASMAAESILLLALA-IWVKDLTGSDGLAGA--TIFAIiAPMVLAPLVGWAVDRYPRRPFFVAANLATAAL-LTPLFTvsraGDVWIIYVVAGLY 108
                 6677788888889999998.778999978888885..77777477**************9999************.77777444657799********* PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgp 193
                 Gl + +l +a a li++++p e  + a+g+l++  +   ++gpl+g++l+ + +gW ++ ++++++   a+v+  +ll++++ +++   ++        
  KIR63152.1 109 GLSYLTLSAALAGLIRQLVPVELLADANGVLQTVRQGLRLVGPLAGAALYaAVGGWLLTGLAMTGFVTAAAVV--ALLRAPEATPADGGSRWT------ 199
                 **************************************************77788****99999999999886..555555555555544444...... PP

       MFS_1 194 aplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlg 272
                 a+l  ++++l   p l  +l++  l+++++ ++ +l++ y+ + l  + +  +g+l+ + +++g++++l++++l++r g
  KIR63152.1 200 AELGAGLRHLAGEPALRRALLGYGLGSLVMGFTESLIFAYVDQGLRRD-AAFVGVLVTVQGIGGLVGGLFSAALVRRAG 277
                 445556788999998877888888888899999999999977777777.788888899999999999*********976 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 5.6e-13
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalf 103
                  ++++++ s++++ + + l +d    ++++g l+t+ ++g +v+ l+ ++l+ r G    l +g++lf+ ++++l++ +s+wl +++ +l+Gl   +++
  KIR63152.1 226 SLVMGFTESLIFAYVDQGLRRD----AAFVGVLVTVQGIGGLVGGLFSAALVRRAGEVGALATGVTLFGPAAVALAY-PSIWLGFAALLLAGLSLPLIT 319
                 5666666666666666555444....779******************************************777778.********************* PP

       MFS_1 104 pagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrksp 184
                  + ++li + +p+   gr+++ + a +s   ++  ++g+ll+  l +r++f+++++v+  a+++  l+  ++ ++++++ p
  KIR63152.1 320 VGLNTLIQRRTPPGLLGRVVSAAEALVSGPQAISIGAGALLVGVLDYRVLFVLVGVVTTAAGIF--LWRGRRLSAPAPSVP 398
                 **************************************************************97..666544444443333 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   4.6   4.6e-09   2.1e-05     217     337 ..       1     121 [.       1     130 [. 0.90
   2 !   23.4   3.8   4.4e-09     2e-05     156     333 ..     160     320 ..     135     328 .. 0.81
   3 ?   -2.7   0.6      0.36   1.6e+03     311     418 ..     363     383 ..     344     386 .. 0.51

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.6e-09
       MFS_2 217 lkevfrnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlll.qpsnl 314
                 ++ v+  + f++l+ + l+ ++a  +l  +l+  +++  g++  a +  ++++++++l +pl+ +++ r+ ++  ++++ l+t++ll+ ++ + +++++
  KIR63152.1   1 MRTVLGRPDFRLLFGALLASMAAESILLLALAIWVKDLTGSDGLAGATIFAIIAPMVL-APLVGWAVDRYPRRPFFVAANLATAALLTPLFTVsRAGDV 98 
                 57889999********************************888888888877777765.7****************************999999***** PP

       MFS_2 315 llflvllviagfgvgvaallpws 337
                 ++ +v++ ++g+++ ++  +++ 
  KIR63152.1  99 WIIYVVAGLYGLSYLTLSAALAG 121
                 **************998777665 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 4.4e-09
       MFS_2 156 llvlilgglkserkgylifaliialLmllgviivvlgtkervemrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyv 254
                 ++            g+l+++l ++  ++++++++ l   e + +    + +++   +l  +l+++  ++a+++ ll++ l +l +g++++l   y++  
  KIR63152.1 160 AV-----------GGWLLTGLAMTGFVTAAAVVALLRAPEATPA----DGGSRWTAELGAGLRHLAGEPALRRALLGYGLGSLVMGFTESLIFAYVDQG 243
                 33...........4899999999999999999999999999777....89999999******************************************* PP

       MFS_2 255 lg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaal 333
                 l+ +++ + v+ +v  i++l+g ++ ++l++r g   + + g +l  +  + v l+   +++l +++l++ag+++ ++++
  KIR63152.1 244 LRrDAAFVGVLVTVQGIGGLVGGLFSAALVRRAGEVGALATGVTLFGP--AAVALA-YPSIWLGFAALLLAGLSLPLITV 320
                 **45555555555559******************99988877655555..555566.67999999999999999877665 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.36
       MFS_2 311 psnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllLsafgyrakasvqspqvvlalrllyavlp 409
                   ++                                                                                       r+l+ +++
  KIR63152.1 363 VLDY---------------------------------------------------------------------------------------RVLFVLVG 374
                 3333.......................................................................................44444444 PP

       MFS_2 410 avlllvall 418
                 +v+++++++
  KIR63152.1 375 VVTTAAGIF 383
                 444444443 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7  34.1   1.3e-08   5.8e-05      12     366 ..      10     364 ..       5     399 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.3e-08
       MFS_3  12 FrviWiaslvsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllalt 110
                 Fr ++ a l+s     i   a +  + d++ s+        a   P ++l+ l+G   D + rR +++a+   la++++l  ++++    ++w++ +++
  KIR63152.1  10 FRLLFGALLASMAAESILLLALAIWVKDLTGSDGLAGATIFAIIAP-MVLAPLVGWAVDRYPRRPFFVAAN--LATAALLTPLFTVSRAGDVWIIYVVA 105
                 6666666666666666666666666667776665443333344445.56777889999*******998877..57777888888889999********* PP

       MFS_3 111 lligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsyla..livallrwkrevrksslprEklleal 207
                  l g+     + a    + +lv+ + + +A  +        R vGP  g  l aavG +l  +++   +++   +vallr+  + +++     + ++ l
  KIR63152.1 106 GLYGLSYLTLSAALAGLIRQLVPVELLADANGVLQTVRQGLRLVGPLAGAALYAAVGGWLLTGLAMTGFVTaaAVVALLRAPEATPADG--GSRWTAEL 202
                 *****9999999***************99976555455667****************99888777777765115666666666666654..5678999* PP

       MFS_3 208 raglRftaasreikavlvRaalFglsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalass 306
                  aglR+ a  + ++ +l+   l  l      +L+   + + l  da++ G+l++  G+G ++g+l+++ L +r ++   +++ +  +   +++la  +s
  KIR63152.1 203 GAGLRHLAGEPALRRALLGYGLGSLVMGFTESLIFAYVDQGLRRDAAFVGVLVTVQGIGGLVGGLFSAALVRRAGEVGALATGVTLFGPAAVALA-YPS 300
                 *****************9877777777777888888899*******************************9999988887777777777777777.589 PP

       MFS_3 307 lwvavlvlllgGaaWitalstlnvavqlavPrWvvgRalavYltvlaG....glaaGsllWGav 366
                 +w+ + +lll+G +  +   +ln+ +q  +P  + gR+++   ++++G    ++ aG+ll G++
  KIR63152.1 301 IWLGFAALLLAGLSLPLITVGLNTLIQRRTPPGLLGRVVSAAEALVSGpqaiSIGAGALLVGVL 364
                 ***************9999****************************96655567888888876 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   3.4   4.9e-06     0.022     248     375 ..      31     159 ..       2     167 .. 0.83
   2 !   10.6   3.5     4e-05      0.18     239     360 ..     227     348 ..     215     370 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.9e-06
  MFS_1_like 248 lflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaii...enawlvlpievLhgisfgllwaaaveyvskiap 343
                 l ++ k+l  s  l+G+++ +  +a ++l  +  + ++++  +   ++a la+++ +  + ++    ++w++ ++  L+g+s+ +l aa++  +++++p
  KIR63152.1  31 LAIWVKDLTGSDGLAGATI-FAIIAPMVLAPLVGWAVDRYPRRPFFVAANLATAALLTPLFTVsraGDVWIIYVVAGLYGLSYLTLSAALAGLIRQLVP 128
                 6777888888889999876.678888888889999999999999999999999998876666656699******************************* PP

  MFS_1_like 344 ksleatgqgllsglyfglGralGsliGGllwd 375
                  +l a   g+l+++  gl r +G l+G +l+ 
  KIR63152.1 129 VELLADANGVLQTVRQGL-RLVGPLAGAALYA 159
                 *****************9.8889888888875 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 4e-05
  MFS_1_like 239 mswgiienFlflYL.kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaave 336
                  ++g+ e+ +f Y  + l     ++G+lv+++ ++ ++  +f+  l+++ G v  l ++++++    + +a+  + wl + + +L g+s+ l+ + + +
  KIR63152.1 227 LVMGFTESLIFAYVdQGLRRDAAFVGVLVTVQGIGGLVGGLFSAALVRRAGEVGALATGVTLFGPAAVALAY-PSIWLGFAALLLAGLSLPLITVGLNT 324
                 5678888889999966689999*************************************9999998888876.789*********************** PP

  MFS_1_like 337 yvskiapksleatgqgllsglyfg 360
                  +++ +p++l +++ +  ++l  g
  KIR63152.1 325 LIQRRTPPGLLGRVVSAAEALVSG 348
                 **********99988776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3241.85
//
Query:       KIR63153.1  [L=80]
Description: glutaredoxin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-14   54.2   0.0    1.6e-14   53.9   0.0    1.1  1  Glutaredoxin   Glutaredoxin
    2.7e-05   24.5   0.0      3e-05   24.4   0.0    1.2  1  DUF836         Glutaredoxin-like domain (DUF836)
    2.7e-05   24.5   0.0    3.3e-05   24.2   0.0    1.1  1  GST_N_3        Glutathione S-transferase, N-terminal domain
    0.00046   20.6   0.1      0.003   18.0   0.1    1.9  1  Thioredoxin_2  Thioredoxin-like domain
     0.0014   18.5   0.0     0.0018   18.2   0.0    1.2  1  Thioredoxin    Thioredoxin
  ------ inclusion threshold ------
      0.014   15.7   0.0      0.018   15.4   0.0    1.2  1  GST_N_2        Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   5.2e-18   1.6e-14       2      55 ..       3      57 ..       2      62 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 5.2e-18
                  EEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHH.TSSSSSEEEE CS
  Glutaredoxin  2 vlftkptCpyCkkakrlLkelgvkfeeidvdkdeeireelkels.gvrtvPqvfi 55
                  +++++p+C+yC++ k  L++ g++++++d+++d+++ e +++++ g +tvP++ +
    KIR63153.1  3 TMYSTPWCGYCHRLKSQLDREGIAYQVVDIEQDPKAAEFVMSVNgGNQTVPTLRF 57
                  79*******************************************99****9975 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   9.9e-09     3e-05       2      43 ..       2      39 ..       1      76 [. 0.76

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 9.9e-09
                EEEEE-TT-HHHHHHHHHHHHHCCCTTEEEEEEETTT-CCCH CS
      DUF836  2 ltLyskpgChlCeqakekLkelkleegleleviDIakdeele 43
                lt+ys+p C+ C+++k++L     +eg+  +v+DI++d++  
  KIR63153.1  2 LTMYSTPWCGYCHRLKSQLD----REGIAYQVVDIEQDPKAA 39
                89******************....6889999*****999833 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.1e-08   3.3e-05       2      58 ..       5      64 ..       4      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.1e-08
                ES-TTSHHHHHHHHHHHHHT--EEEE---TTTTHHHH.HHH-.TT--SSEEE.TTS-EEE CS
     GST_N_3  2 ygfpaSpyarrvrlaLnekglpvevvevtpgehdeel.lakn.plgkvPvLe.ddgealt 58
                y++p + y+ r +  L+  g++++vv+++++ + +e+ + +n ++++vP+L+  dg alt
  KIR63153.1  5 YSTPWCGYCHRLKSQLDREGIAYQVVDIEQDPKAAEFvMSVNgGNQTVPTLRfADGSALT 64
                999******************************8888566668********978898875 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1     1e-06     0.003       9      53 ..       2      32 ..       1      73 [. 0.62

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1e-06
  Thioredoxin_2  9 lvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavai 53
                   l+++++p+C+yC++lk +l+   ++               ++v+i
     KIR63153.1  2 LTMYSTPWCGYCHRLKSQLDRE-GI-------------AYQVVDI 32
                   78999***********988876.22.............2222222 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   6.1e-07    0.0018      22      83 ..       2      62 ..       1      77 [. 0.67

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.1e-07
                 EEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSH.HHHHHTT-SSSSEEEEEETTE CS
  Thioredoxin 22 lveFyApwCghCkalaPeleklaeelkdkvklakvdvdene.dlakkyevegiPtlklfkngk 83
                 l  +  pwCg C +l+++l++   +++  v + + d ++ e  +  + + + +Ptl+++  + 
   KIR63153.1  2 LTMYSTPWCGYCHRLKSQLDREGIAYQ-VVDI-EQDPKAAEfVMSVNGGNQTVPTLRFADGSA 62
                 556889**************9999999.3333.333333330334445667889998877665 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   5.9e-06     0.018       1      57 [.       9      63 ..       9      70 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.9e-06
                S-HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHH.HHHC.TTTSSSEEE-CTTEEE CS
     GST_N_2  1 aCPwahRvlialalkglediisvvvlepkgfekseef.prln.prgtVPvLwdkdgqvi 57
                +C ++hR    l   g+ +++  +   ++ + k +ef   +n ++ tVP+L   dg+ +
  KIR63153.1  9 WCGYCHRLKSQLDREGIAYQVVDI---EQ-DPKAAEFvMSVNgGNQTVPTLRFADGSAL 63
                7*******************8888...33.3344455257884578******9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.30s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 559.63
//
Query:       KIR63154.1  [L=720]
Description: ATP-dependent DNA helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-43  146.9   0.0    4.2e-22   79.1   0.0    2.2  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
    1.2e-41  143.2   0.0    1.2e-23   84.1   0.0    2.1  2  UvrD_C           UvrD-like helicase C-terminal domain
    1.3e-34  119.6   0.1    2.8e-34  118.6   0.1    1.5  1  AAA_19           AAA domain
    6.8e-19   67.6   0.1    1.7e-18   66.3   0.1    1.8  1  HRDC             HRDC domain
    8.9e-13   47.9   0.6    7.7e-12   44.9   0.6    2.6  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    0.00025   20.8  12.0      0.003   17.3   9.9    2.8  2  AAA_30           AAA domain
  ------ inclusion threshold ------
      0.025   14.3   0.8        1.2    8.9   0.0    2.9  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.12   12.0   0.0        1.9    8.1   0.0    2.4  2  AAA_12           AAA domain


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.3   2.9e-21   6.5e-18       1      67 [.      14      80 ..      14     125 .. 0.87
   2 !   79.1   0.0   1.9e-25   4.2e-22     190     308 ..     150     272 ..     130     278 .. 0.84

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 2.9e-21
                   SSHHHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH CS
  UvrD-helicase  1 lnpeqreaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee 67
                   l+peqr+a++ + gp+ v+A+AG+GKT+ +++ri++   ++e++ +++l+vTFT +Aa+El++R+++
     KIR63154.1 14 LDPEQRAAVTAPAGPVCVLAGAGTGKTRAVTSRIAHRALTGEVSGRHVLAVTFTARAAAELRARLTA 80
                   579**************************************************************98 PP

  == domain 2  score: 79.1 bits;  conditional E-value: 1.9e-25
                    HHTTCCTTHHCHSS....TSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHHT CS
  UvrD-helicase 190 kekqlspkelkkaf....ekasdlqkkiaeflkeyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyrilkllas 281
                    k+++++p e+  a     + +  +  k+ae++  y++ k+++  +Df+d+l a++   ee++++ae++r +y++  +DEyQD n+ Q r+l+    
     KIR63154.1 150 KSSLVEPGEYVVAAakalRDTPHEPAKVAEVFVAYEKLKRANGVIDFEDMLRAAVWGIEEHPDVAEQVRGQYRHFVVDEYQDVNPLQQRLLEAWLG 245
                    5555555444443344435566677899******************************************************************** PP

                    TTTTEEEEE-GGG--GGGGTB-THHHH CS
  UvrD-helicase 282 gheelfmvGDpkQsIYgFRgAdielfl 308
                    g++ +++vGD  Q IY+F gA    + 
     KIR63154.1 246 GRDDVTVVGDASQTIYSFTGATSAYLV 272
                    *********************977665 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   8.4e-19   1.9e-15       2     123 ..     285     408 ..     284     412 .. 0.93
   2 !   84.1   0.0   5.2e-27   1.2e-23     235     347 ..     443     562 ..     419     564 .. 0.76

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 8.4e-19
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C   2 vLekNyRStksLlkaankflenilnrrale.kek..ktvekgekivvleaeteeeEaekiaatikallekneklediavLvRsnkdadkiskaLkkegi 97 
                 +L + yRSt++++++an++++++ + +a +   +   ++ +g + +++ + +e  Ea  +a   kal++  +   +iavL+R+n++++  +kaL + ++
  KIR63154.1 285 RLVRDYRSTPQVVGLANAVISQARGTEARLrL-ElvGQRPPGPEPELRIFTDEPAEAAAVATRCKALVDAGTPAREIAVLFRTNAQSEAYEKALTEAEV 382
                 78899***************999999777743.358999************************************************************ PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  98 pfnvvdeekfFkreeikdilaylkll 123
                 p++v + e+fF+r e+++++  l+  
  KIR63154.1 383 PYVVQGAERFFERAEVRQAMVALRAA 408
                 *********************99975 PP

  == domain 2  score: 84.1 bits;  conditional E-value: 5.2e-27
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 235 eeklenlreLysllkelekkeeeeeveek...lneileiatLseseleeskkk.....ekipiiTiHqAKGlEFdvVflagleegtfPsyrskkekrle 325
                 +e++e l+ L++l++e  ++  +  +  +   ++++++ a  +++  ++   +     e +++ ++H+AKGlE+d Vfl+gl+egt+P+ ++++ +++e
  KIR63154.1 443 RERWEALAALVQLAEEHAATP-PVLPIGEaaaVQRLVTLADFNDELARRAAAQhvptvEGVTLASLHSAKGLEWDAVFLVGLSEGTLPTTYARTAEQVE 540
                 348999999999999988843.33332222344444444433333332222223334699*************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 326 EEkRlfYVaiTRAkkrLfisys 347
                 EE+Rl+YV+iTRA++ L++sy+
  KIR63154.1 541 EERRLLYVGITRARQWLWLSYA 562
                 ********************97 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   0.1   1.2e-37   2.8e-34       1     145 [.      18     263 ..      18     264 .. 0.95

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 1.2e-37
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae...atTiHrlal................... 77 
                 qr+av ++++++++v+aG+GtGKTr ++ ++a+   +g+v+ +++l+v+ft rAa elr rl+alg+    a+T+H+ al                   
  KIR63154.1  18 QRAAV-TAPAGPVCVLAGAGTGKTRAVTSRIAHRALTGEVSGRHVLAVTFTARAAAELRARLTALGVGgvqARTFHAAALrqvryfaprllagrampel 115
                 88999.********************************************************999876777*******99******************* PP

      AAA_19  78 ..............................................................................ldfddlltealelle.eaeee 97 
                                                                                               +df+d l  a+  +e + +  
  KIR63154.1 116 ldskarivtlaaarvglradraaardlageiewaksslvepgeyvvaaakalrdtphepakvaevfvayeklkrangvIDFEDMLRAAVWGIEeHPDVA 214
                 ***********************************************************************9999999999999988888888755677 PP

      AAA_19  98 kklqeee.llivDEfqdvdelqyrLlkallgekkklllvGDpdQliyvf 145
                 ++++ ++ +++vDE+qdv++lq+rLl+a+lg ++++++vGD+ Q+iy+f
  KIR63154.1 215 EQVRGQYrHFVVDEYQDVNPLQQRLLEAWLGGRDDVTVVGDASQTIYSF 263
                 88989999**********************99999*************9 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.1   7.6e-22   1.7e-18       2      68 .]     636     702 ..     635     702 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 7.6e-22
                 HHHHHHHHHHHHHHHHHHTS-HHHHS-HHHHHHHHHH---SHHHHHTSTTT-HHHHHHHHHHHHHHH CS
        HRDC   2 lallkaLrewReelAreedvppyvvfpdktLleiAeklPttleeLlqiegvgkrklekygeeileai 68 
                 ++l+++Lr+wR ++A ++ vp+yvvf+d+t+ ++Ae++P  +eeL +i g+g+rk+  yge +l+++
  KIR63154.1 636 EELYERLRDWRARVAAAQKVPAYVVFTDATITALAERRPGRAEELIAIAGIGPRKIGLYGEPVLALV 702
                 79***********************************************************999875 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.6   3.4e-15   7.7e-12       4      51 ..     504     559 ..     501     560 .. 0.75

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 3.4e-15
    UvrD_C_2   4 altihkaQGsefpaVivfdpdlaaarmgel..........rrrlLYtavTRAreklil 51 
                   + h a+G+e++aV+++  ++ + +  +            rrlLY+++TRAr++l+l
  KIR63154.1 504 LASLHSAKGLEWDAVFLVGLSEGTLP--TTyartaeqveeERRLLYVGITRARQWLWL 559
                 5678*************875543332..112344455666*****************8 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   9.9   1.3e-06     0.003       2      80 ..      14      98 ..      13     317 .. 0.78
   2 ?   -3.3   0.0       2.8   6.3e+03       4      25 ..     367     388 ..     343     389 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.3e-06
      AAA_30  2 lnaeQaaavealltsgdrvavltGpAGtGKttalkal..reaweaa..ggrviglAptgkaAkvLaeelg......ieastiakllkrl 80
                l++eQ+aav+a     +  +++ ++AGtGKt a+++    +a++ +  g++v++++ t++aA++L++ l       ++a+t +    r+
  KIR63154.1 14 LDPEQRAAVTAP----AGPVCVLAGAGTGKTRAVTSRiaHRALTGEvsGRHVLAVTFTARAAAELRARLTalgvggVQARTFHAAALRQ 98
                789999999543....334788999******999764234555544467*****************74442223335999999766444 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.8
      AAA_30   4 aeQaaavealltsgdrvavltG 25 
                 + Q++a e++lt+ +   v++G
  KIR63154.1 367 NAQSEAYEKALTEAEVPYVVQG 388
                 4577777777777766555555 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.098   2.2e+02       3      23 ..      31      52 ..      29      89 .. 0.74
   2 ?    0.2   0.0      0.23   5.2e+02      61     104 ..     219     263 ..     197     291 .. 0.72
   3 ?    8.9   0.0   0.00051       1.2     181     228 ..     501     555 ..     475     559 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.098
  Viral_helicase1  3 vhGvpGcGKStlirkllrts.l 23
                     v + +G GK++++ + + ++ l
       KIR63154.1 31 VLAGAGTGKTRAVTSRIAHRaL 52
                     7788*********999988553 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.23
  Viral_helicase1  61 tkgkililDEylllhaGyill.laalskaklvilfGDplQipfhs 104
                       +++  ++DEy+ +++ +  l  a l + + v ++GD  Q  ++ 
       KIR63154.1 219 GQYRHFVVDEYQDVNPLQQRLlEAWLGGRDDVTVVGDASQTIYSF 263
                      4688899****9998766655333455556788888888877665 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00051
  Viral_helicase1 181 gvrevttvhevqGltfdkVtlvllketdlelis..........esrenllvAlTRhrk 228
                      gv+     h++ Gl++d V lv l+e +l   +          e+r  l+v++TR+r+
       KIR63154.1 501 GVT-LASLHSAKGLEWDAVFLVGLSEGTLP--TtyartaeqveEERRLLYVGITRARQ 555
                      444.7789**************99876643..3357899999988***********97 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.5   3.3e+03      15      36 ..     281     302 ..     276     306 .. 0.82
   2 ?    8.1   0.0   0.00084       1.9      90     194 ..     338     559 ..     333     560 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.5
      AAA_12  15 ekvvlLdtqYRmhpeIsrfpsk 36 
                 + vv L   YR+ p+++ +++ 
  KIR63154.1 281 ATVVRLVRDYRSTPQVVGLANA 302
                 56788999********999886 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00084
      AAA_12  90 eEaelvvklvekllkkgseeerkkigvitpYraqvellkkklke....................................................... 133
                 +Ea++v+  +++l+++g+ +  ++i+v+   +aq e  +k+l+e                                                       
  KIR63154.1 338 AEAAAVATRCKALVDAGTPA--REIAVLFRTNAQSEAYEKALTEaevpyvvqgaerfferaevrqamvalraatrsipgetplrdavveglaavgwtpd 434
                 68888888888888888888..78888888888888888888876666666666666666666666666666666666666666666666666666666 PP

      AAA_12 134 ...............................................keeekseke..................ievntvdgfQGrekdviilslVRsn 167
                                                                +                          ++ ++  +  G e+d+++l      
  KIR63154.1 435 aapaggaarerwealaalvqlaeehaatppvlpigeaaavqrlvtlaD-------FndelarraaaqhvptvegVTLASLHSAKGLEWDAVFLVGLSEG 526
                 666666555555555555555555555555444444444444444441.......03334444555566667779999999999999999999877775 PP

      AAA_12 168 ......ekkeigflkderrlNValTRAksklii 194
                       ++      +++r l V +TRA++ l++
  KIR63154.1 527 tlpttyARTAEQVEEERRLLYVGITRARQWLWL 559
                 5666544444445566666799*****999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 4713.08
//
Query:       KIR63155.1  [L=84]
Description: hypothetical protein TK50_19935 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       178  (0.00992805); expected 358.6 (0.02)
Passed bias filter:                      135  (0.0075297); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 618.84
//
Query:       KIR63156.1  [L=121]
Description: transcription factor WhiB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-13   51.4   0.1    1.9e-13   50.8   0.1    1.3  1  Whib      Transcription factor WhiB
     0.0092   15.7   2.7      0.018   14.8   2.7    1.5  1  AT_hook   AT hook motif


Domain annotation for each model (and alignments):
>> Whib  Transcription factor WhiB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.1   2.1e-17   1.9e-13       6      55 ..      19      68 ..      15      81 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 2.1e-17
        Whib  6 aCrgedpelffpekgdreeeAkavCarCpVrreCleealeegeeyGvwGG 55
                 Cr+ dp+l+f+ + ++ e Ak++C  Cp+r eCl+ a+e+ e++GvwGG
  KIR63156.1 19 PCRKFDPDLWFSDQPAELELAKSLCGDCPLRVECLAGAVERAEPWGVWGG 68
                5**********9999**********************************9 PP

>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   2.7     2e-06     0.018       1       9 [.      80      88 ..      80      92 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2e-06
     AT_hook  1 kRkRGRPrK 9 
                kR+RGRPrK
  KIR63156.1 80 KRPRGRPRK 88
                8*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 842.57
//
Query:       KIR63157.1  [L=62]
Description: hypothetical protein TK50_19945 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 445.11
//
Query:       KIR63158.1  [L=443]
Description: ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-24   84.0   0.0    1.4e-23   83.3   0.0    1.3  1  ABC1      ABC1 family
      9e-05   22.5  15.7     0.0016   18.5  12.4    3.6  2  APH       Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.28   10.5   0.0       0.44    9.9   0.0    1.2  1  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   2.3e-27   1.4e-23       2     118 ..     113     232 ..     112     233 .. 0.95

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 2.3e-27
        ABC1   2 elgkkleeiFaefdeePiAaASiaqVhrAklks...ge..eVavKvqrpgvkkriksDlellkllakllkkflkelrldleelvdefskslleEldfer 95 
                 +lg  ++e F +fd++P AaASi+qVhrA+ ++   g   +VavK+q+pg  +++ +Dl+ l++l  +++ + ++l+  ++ l+ e+++++ eEld+e 
  KIR63158.1 113 QLGPAWRERFVSFDDTPAAAASIGQVHRAVWRDpddGAprDVAVKIQYPGAGDALLADLKQLSRLGGMFRAIQPGLD--VKPLLVELRERITEELDYEL 209
                 79999**************************975443377*************************************..******************** PP

        ABC1  96 EAknaekfrenfaklkevkvPkv 118
                 EA+++  f+  +  ++e+ +P v
  KIR63158.1 210 EAESQRAFAAAYVGDDEIFIPAV 232
                 ********************998 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5  12.4   2.6e-07    0.0016      94     196 ..     163     308 ..      25     313 .. 0.67
   2 ?   -0.3   0.1      0.13     8e+02      22      67 ..     353     400 ..     338     422 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.6e-07
                 HHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHH......................................... CS
         APH  94 llealgeflaalhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeq......................................... 151
                 +++al + l++l+++     ++++   + l++ ++l++ +  ++ +el+   +e+e+q                                         
  KIR63158.1 163 AGDALLADLKQLSRL----GGMFRAIQPGLDVKPLLVELR-ERITEELDY-ELEAESQrafaaayvgddeifipavltatprvlvtewiegtplaeiir 255
                 333333333355555....555555556777777777773.455555555.455555567888888888888888888888888777777777777777 PP

                 ............HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 152 ............vlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                             ++a l   +p   +++llH D+hpgN+ + pd gr+ GviDf+ +
  KIR63158.1 256 egseeqrdeagrLMAILHLSAP--ARAGLLHADPHPGNFRLLPD-GRL-GVIDFGAV 308
                 7777767766667777777777..8*****************66.999.*****976 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.13
                 -EEEEEE-TTS-HHHHHHHHHHH.HHHHHTT-...B--B-CTTBS-EEET CS
         APH  22 ryvlrrnpparaaeeirrevall.rlLakagv...pvPevlagdtddeei 67 
                 + vl +++p  +++ +++e+++  ++L++  +     P+  a++ +++ +
  KIR63158.1 353 QAVLDFIRPM-LDPVAEEEFRFTrAWLRAE-AtrlASPRSPAYQLSRQLN 400
                 6677777777.6666666666663344433.2233455555555555555 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   7.4e-05      0.44      70     151 ..     235     314 ..     227     323 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 7.4e-05
                 SSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSS CS
     Pkinase  70 kdelylvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakeless 151
                  + ++lv+e++eg+ la+++++ +  + +ea ++++ +   l+   ++g++H D  p N+ +  +g l ++DFG ++++ ++
  KIR63158.1 235 ATPRVLVTEWIEGTPLAEIIREGSEEQRDEAGRLMAILH--LSAPARAGLLHADPHPGNFRLLPDGRLGVIDFGAVARMPEG 314
                 556789**************9877778888888876543..6677799************9999***********9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.53
# Mc/sec: 2495.40
//
Query:       KIR63159.1  [L=350]
Description: thiamine biosynthesis protein ThiF [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-09   35.1   0.3    2.8e-07   30.1   0.3    2.3  1  ThiF      ThiF family


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.3   1.6e-11   2.8e-07      15     242 ..     130     345 ..     117     347 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.6e-11
                 HHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CCGCCS-HHHHTT-SEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  15 kLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteritdetvleellesvDlV 113
                 + r+++vl+ GaG lG +++++La +Gvg+++    + + + +l+   l   +d G+p a ++++a+ +++p++  +++++               DlV
  KIR63159.1 130 RRRAARVLVTGAGRLGAPVAVALAQAGVGHVRPDLAGPVCPADLVGTGL-AAADLGRPLAAAVRDAVDRVAPGTATRPLRGGR------------PDLV 215
                 44679***************************888899*********99.89********************97777666543............4999 PP

                 EEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-.......T....GGS.EECCCCEEHHHHHHCTE-B-HHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......x....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 114 vdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCld.......p....sstedptekkvplctsiagnipaiatttavvaglaa 201
                 +     ++a +  + ++++++  l+ +  +g+ +    + p   +c++C d       p     + + +t++  ++c    g     a+t+  +ag aa
  KIR63159.1 216 LQLGVDRPAALVAAGFAQRRQPHLLLGLREGVPTVGPLVRPPIGPCLRCVDlhrtdrdPgwptLAAQLATDAPDQAC----G-----AATLLAAAGYAA 305
                 99999999999999****9997788877788777666667899********66555551444666666677777777....5.....88899999**** PP

                 HHHHHHH.TTBCGGGCCEEEECCTTTT.EEEEECCEEEEEEC- CS
                 xxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
        ThiF 202 lellkll.sgkeklenslltqvdlles.rfenvelerakkskc 242
                 +e+l +l  g++++ + ++ qv++    r +++++  ++ ++c
  KIR63159.1 306 AEALAHLdGGTPETLGCAV-QVAGPGRlRRRTWPP--HPSCRC 345
                 *******444444444444.444444304444444..555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2495.64
//
Query:       KIR63160.1  [L=176]
Description: metal-dependent hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-21   77.8   0.1    5.9e-21   75.5   0.0    1.8  2  DUF45      Protein of unknown function DUF45
      6e-05   23.2   0.0    9.6e-05   22.5   0.0    1.3  1  WLM        WLM domain
    0.00031   20.6   0.0    0.00049   19.9   0.0    1.3  1  SprT-like  SprT-like family
  ------ inclusion threshold ------
        9.6    7.2   8.8         15    6.6   0.9    3.1  3  TPR_4      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> DUF45  Protein of unknown function DUF45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.13   5.7e+02      10      39 ..      27      56 ..      17      77 .. 0.71
   2 !   75.5   0.0   1.3e-24   5.9e-21     136     204 ..      95     163 ..      78     165 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.13
       DUF45 10 dgsvevsaPkgvseeeiedfvkkkakwiek 39
                 ++v+v +P ++s +e +++v +  + + +
  KIR63160.1 27 GERVVVLIPDQFSRAEETEWVDRMLARLAA 56
                356688888888888888888776665554 PP

  == domain 2  score: 75.5 bits;  conditional E-value: 1.3e-24
       DUF45 136 ikdmktrWGsc.sskgkirlnwrLvkappevidYVvvHElaHlleknHskrFwalvekllPdwkeakkeL 204
                 +++++ rWGsc +++++ir++ r+  +p  vidYV++HElaHl+ + H++rFwalv ++ P++++a+  L
  KIR63160.1  95 VTNQNGRWGSCtPADRTIRISHRIQDMPDWVIDYVLLHELAHLIVPSHNARFWALVGRY-PKAERARGYL 163
                 78999******999******************************************996.7777777655 PP

>> WLM  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.1e-08   9.6e-05      83     108 ..     126     151 ..     116     170 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.1e-08
         WLM  83 imgtllHELaHnvygpHdakFyallk 108
                 i  +llHELaH +   H+a+F+al+ 
  KIR63160.1 126 IDYVLLHELAHLIVPSHNARFWALVG 151
                 6679*******************975 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.1e-07   0.00049      17      77 ..      86     139 ..      61     150 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.1e-07
   SprT-like  17 aaggvkiiwskrlnttaGranlkratvrhhasIeLseklldsrsedrllntLaHElcHlal 77 
                 +a  v+++w ++ n   G ++          +I++s+++ d  ++  +  +L+HEl+Hl++
  KIR63160.1  86 QAVPVSVRWVTNQNGRWGSCTPAD------RTIRISHRIQDM-PDWVIDYVLLHELAHLIV 139
                 57889*****999**********9......***********9.999999**********87 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.9    0.0033        15       2      17 ..      46      61 ..      46      63 .. 0.89
   2 ?   -1.8   0.3       1.7   7.8e+03       2      16 ..      71      85 ..      70      87 .. 0.74
   3 ?    4.9   0.0     0.011        51       8      22 ..     144     158 ..     141     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0033
       TPR_4  2 rallaLArallalGdl 17
                ++  +LAr++++ G+l
  KIR63160.1 46 WVDRMLARLAAREGRL 61
                67899**********8 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.7
       TPR_4  2 rallaLArallalGd 16
                ra+ +++  l++ Gd
  KIR63160.1 71 RATRLRGLYLAEYGD 85
                788888888887666 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.011
       TPR_4   8 ArallalGdldeAra 22 
                 Ar +++ G+++ A++
  KIR63160.1 144 ARFWALVGRYPKAER 158
                 999**********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1277.96
//
Query:       KIR63161.1  [L=202]
Description: hypothetical protein TK50_19965 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.042   13.7   0.2      0.062   13.1   0.2    1.4  1  DUF2064   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2064  Uncharacterized protein conserved in bacteria (DUF2064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   3.5e-06     0.062      50     109 ..      79     135 ..      33     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.5e-06
                 HHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHHHHTTT-SEEEEEBTTSSEEEEEEEG- CS
     DUF2064  50 arafdrafeageepvlliGsDcpqltaalleqAfeaLeeadaVlgpaeDGGYyllGlkkr 109
                  +a+   + ag++++ ++ +D p+l+  ++ + ++ L+++ + l p+e  G  llG+ +r
  KIR63161.1  79 LAAL---AGAGYDEAAVVAADAPDLPGLTVGKLLRPLTTRPVALAPVEGSGTGLLGVASR 135
                 3333...456999*******************************************9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1381.88
//
Query:       KIR63162.1  [L=332]
Description: hypothetical protein TK50_19975 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-12   48.1   0.1    5.1e-12   46.0   0.0    2.1  2  PDZ_2        PDZ domain
      1e-08   34.9   0.1      3e-08   33.4   0.1    1.9  1  PDZ_6        PDZ domain
    5.2e-08   32.7   0.3    1.2e-07   31.5   0.3    1.5  1  Lon_C        Lon protease (S16) C-terminal proteolytic domain
    3.6e-05   24.0   0.0     0.0001   22.6   0.0    1.7  2  PDZ          PDZ domain
  ------ inclusion threshold ------
      0.016   15.2   0.1       0.12   12.3   0.0    2.1  2  CE2_N        Carbohydrate esterase 2 N-terminal
      0.018   15.0   0.3       0.21   11.6   0.0    2.6  3  Tricorn_PDZ  Tricorn protease PDZ domain
       0.12   12.2   0.0       0.23   11.3   0.0    1.4  1  ChlI         Subunit ChlI of Mg-chelatase


Domain annotation for each model (and alignments):
>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0     2e-15   5.1e-12      15      81 ..     130     195 ..     109     195 .. 0.93
   2 ?   -1.7   0.0       1.4   3.7e+03       1      13 [.     203     223 ..     203     255 .. 0.62

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 2e-15
                 -EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEEE CS
       PDZ_2  15 gvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvevk 81 
                 +vlv +V+ ggP+++  lk+gDv+++vdg++v+s  +l +l+++k +G+ +++ ++R g+ +t+ ++
  KIR63162.1 130 QVLVKTVTAGGPSEGV-LKPGDVVTSVDGTPVTSAGKLTELIRAKPAGTSLTVGYTRAGTAATARIT 195
                 578999******9999.********************************************999875 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
                 ....XX------......... CS
       PDZ_2   1 pylGvsvsdeed........t 13 
                 p +Gv++ ++++         
  KIR63162.1 203 PRIGVEIDQQQPhpftlsidL 223
                 679999999988555444440 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.1   1.2e-11     3e-08       2      52 ..     133     181 ..     132     185 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.2e-11
       PDZ_6   2 VtaVdpgsPAdrAG.lrvGDiilsvNGqpveglsladvaallr.gsagesvvl 52 
                 V++V +g+P +  G l++GD+++sv+G+pv  +s   + +l+r  +ag+s+++
  KIR63162.1 133 VKTVTAGGPSE--GvLKPGDVVTSVDGTPV--TSAGKLTELIRaKPAGTSLTV 181
                 99*********..99***************..***********8888887776 PP

>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.3   4.7e-11   1.2e-07     109     176 ..     228     297 ..     223     318 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 4.7e-11
                 GGGGHHHHHHHHHHHHTS--B-..TTBEE--EE-TT-BEE--S-HHHHHHHHHHTT-SBEEEEGGGGGGT CS
       Lon_C 109 GPsaGvtlatalvslltgkkvr..kdvamtGeitLrGrvlpiGGlkekllaakragikkvilPkenekdl 176
                 GPsaG+ +a  +v  l        + +a tG i  +Grv piGG+ +kl++ak +g k  ++P++n  + 
  KIR63162.1 228 GPSAGLMFALGIVDKLEPADLTggMIIAGTGTIDDEGRVGPIGGIAQKLVGAKDSGAKVFLVPEANCAEA 297
                 9***************877766115689999**********************************98765 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.9e-08    0.0001      28      79 ..     131     181 ..     114     183 .. 0.91
   2 ?   -3.6   0.0       6.1   1.6e+04       8      21 ..     201     214 ..     196     219 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.9e-08
                 EEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEE CS
         PDZ  28 ifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtL 79 
                 + v+ v +gg+ e   lk+GD+++sv+g++v++  +++  +  k+++ ++t+
  KIR63162.1 131 VLVKTVTAGGPSEGV-LKPGDVVTSVDGTPVTSAGKLTELIRAKPAGTSLTV 181
                 789**********99.*******************99999999999888776 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.1
                 TTSESSEEEEEETT CS
         PDZ   8 grgglGfslkggsd 21 
                 gr ++G++++ ++ 
  KIR63162.1 201 GRPRIGVEIDQQQP 214
                 67788888887766 PP

>> CE2_N  Carbohydrate esterase 2 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.35   9.1e+02       1      27 [.      47      73 ..      47      83 .. 0.87
   2 ?   12.3   0.0   4.8e-05      0.12      18      60 ..     175     219 ..     167     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.35
                EES--EE-TTS-EEE-STT-EEEEEEE CS
       CE2_N  1 yiGRvdfsdpgaprfawpGtsvefrft 27
                ++GR + + +g++r++  G++ ++r +
  KIR63162.1 47 VTGRATSTSAGQLRLTTVGVQPTVRLR 73
                58****999**********99888765 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.8e-05
                 TT-EEEEEEE..EEEEEEEEEE..SSS-EEEEEEETTS--EEEEE CS
       CE2_N  18 pGtsvefrft..GtslsvrlkdkedkgknrlaviiDgkrvkdlkl 60 
                 +Gts+++ +t  Gt++++r++++e++g+ r++v iD ++++ ++l
  KIR63162.1 175 AGTSLTVGYTraGTAATARITSRESDGRPRIGVEIDQQQPHPFTL 219
                 677777766555***************************999877 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.41   1.1e+03      42      72 ..      40      70 ..      33      78 .. 0.70
   2 ?   11.6   0.0   8.1e-05      0.21      37      76 ..     144     183 ..     141     194 .. 0.74
   3 ?   -2.2   0.0       1.6   4.1e+03      52      74 ..     264     286 ..     259     298 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.41
                 TT-EEEEETTEE-BTTB-HHHHHHTTTTSEE CS
  Tricorn_PDZ 42 eGdlilavdgepvskekgiaelLvgkagkev 72
                  G+ +++v g+ +s+++g  +l +   + +v
   KIR63162.1 40 DGKEVIQVTGRATSTSAGQLRLTTVGVQPTV 70
                 6888888999888888776666555545455 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 8.1e-05
                  S---.TT-EEEEETTEE-BTTB-HHHHHHTT.TTSEEEEEE CS
  Tricorn_PDZ  37 GvnvreGdlilavdgepvskekgiaelLvgk.agkeveLtv 76 
                  Gv  + Gd++++vdg pv++  ++ el+  k ag++ ++ +
   KIR63162.1 144 GVL-KPGDVVTSVDGTPVTSAGKLTELIRAKpAGTSLTVGY 183
                  554.89**************999999886653555554444 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.6
                  EE-BTTB-HHHHHHTTTTSEEEE CS
  Tricorn_PDZ  52 epvskekgiaelLvgkagkeveL 74 
                   +v++  gia+ Lvg++++ +++
   KIR63162.1 264 GRVGPIGGIAQKLVGAKDSGAKV 286
                  46888899999999998876655 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     9e-05      0.23      61     121 .]     231     293 ..     217     293 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9e-05
        ChlI  61 fDLpiAigilaaleqieaeeetlfl..GeLsldGslrpvkgvlpialaakkegikkvivpken 121
                   L  A+gi+ +le  + +  ++++  G ++ +G++ p+ g+ + ++ ak++g k ++vp++n
  KIR63162.1 231 AGLMFALGIVDKLEPADLTGGMIIAgtGTIDDEGRVGPIGGIAQKLVGAKDSGAKVFLVPEAN 293
                 568899*****9999999988877622578999***************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2315.29
//
Query:       KIR63163.1  [L=988]
Description: hypothetical protein TK50_19980 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.4e-269  896.4   0.0   1.7e-269  896.1   0.0    1.0  1  UPF0182       Uncharacterised protein family (UPF0182)


Domain annotation for each model (and alignments):
>> UPF0182  Uncharacterised protein family (UPF0182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  896.1   0.0  9.7e-274  1.7e-269       4     758 .]      11     809 ..       8     809 .. 0.94

  Alignments for each domain:
  == domain 1  score: 896.1 bits;  conditional E-value: 9.7e-274
     UPF0182   4 llavlavlllllellarlytellwfkelgylsvfltrlltrlllfvvvflllalllllnlllaerlell........eklerlrealekklkllllaia 94 
                 +l+ ++vl++ll + ++ +t++lwf+e+ y++vf+  l trlllf+vv+l++al++  nl+la+rl+          ++ler+r++l ++l l++ ++a
  KIR63163.1  11 VLVGVFVLFTLLGWGVQAWTDWLWFDEVRYTQVFTGVLATRLLLFLVVGLAMALVVGGNLWLAHRLRPKlrphsleqATLERYRMVLGPRLGLWISLVA 109
                 67778889999*******************************************************33356667788889******************* PP

     UPF0182  95 lvlsllvglvassqwekvllflnstsfgvkDpifgkDisFYvFklPflelllslllalvllaliavllvyllsgeslgirl..kfaelskaarrhlsvl 191
                 lv++l++gl+a+s+w+++llf n+ +fgvkDp fg D++FYvF+lPf++++l++ +++v+lal+ +l+v++++g   g+rl     ++++aar+hls+l
  KIR63163.1 110 LVVGLFAGLSAQSRWNQWLLFRNGGDFGVKDPEFGVDVGFYVFQLPFWRYVLGVGFTAVVLALLGALAVHYIFG---GVRLqgVGDRMTNAARAHLSTL 205
                 **************************************************************************...6666666789************ PP

     UPF0182 192 lallllllalsywLdryellys.krg.vvtGagYtdvnavlpaktilavialvvavl..llvaivlkklklplialallvllaillgvvlpalvqkfiV 286
                 +a+++ll+a++y+Ldr ++l++ ++g  ++GagY d+na lpak ila i++vva++  ++ ++v+++l +p i+lall ++a+++g+++p++vq+f V
  KIR63163.1 206 VAVFVLLKAVAYVLDRRSMLLEyNEGaKLYGAGYADINALLPAKEILAYISVVVAIAiiVFSNAVMRNLVWPGISLALLGVSAVAIGGIYPWAVQTFEV 304
                 ********************99755558*********************999877651156688*********************************** PP

     UPF0182 287 kPnelekEkpYiernIeaTreAygLdkveveefeaeaeltaedleenaetienirLlDprplletfrqlqqirnYYkF.edldvdrYtidgeerqvvia 384
                 kP++ +kE+pYier+I+aTr+A+gL++ +++++ a++ + +++l  +a+++ n+rLlDp++++et++qlqq+r +Y+F ++ld+drY + g++ ++v++
  KIR63163.1 305 KPSAKDKEAPYIERSIDATRAAFGLADTKIQPYAASNLVPPASLGTDASVVPNVRLLDPQLVSETYTQLQQVRGFYDFgPKLDIDRYAVGGKTSDYVVG 403
                 **********************************99989************************************************************ PP

     UPF0182 385 aREldysalpeeaktwvnkhlvYTHGyGvvaspvnkvteeGlpeflvkdip.......seeeeslkieepriYfGel..tndyvivgtkvk....Efdy 470
                 +RE++y +l+++++tw+n+h+vYTHGyG+va+p+n+v  +G+p f+   ++       s+++e+++ ++priY+Ge    +dy+ivg+++     Efd 
  KIR63163.1 404 VREVNYGELTDQQNTWINRHTVYTHGYGLVAAPANQVVCGGQPYFVSGFLGektqeacSAQTEQIPATQPRIYYGERmePEDYAIVGQANPernaEFDR 502
                 *******************************************99999888999887765699*************86689******95444678**** PP

     UPF0182 471 psge.envyntYdGkgGvkigsllrrllfaiklkdlklllsseitseskilfrRnikeRvekvaPfLtlDsdpYlvvadgrlyWivDaYTtsdrYPySe 568
                 p+++  ++y+tY+G+gGv+igs+ rrll+aik +++++lls++++++sk+l+ Rn+++RvekvaPfLtlD+dpY++v+ gr++WivD+YTt+ +YPy+e
  KIR63163.1 503 PTQTgGEQYYTYTGEGGVEIGSFSRRLLYAIKEQESNFLLSEAVNENSKLLYVRNPRDRVEKVAPFLTLDGDPYPAVVGGRVQWIVDGYTTAATYPYAE 601
                 *998568******************************************************************************************** PP

     UPF0182 569 p...eeats............geeevnYiRNSVKvvvDAydGtvklYvvdeeDPiikawskiFpg.lfkplsempeeLrshlrYPedlFkvqsellakY 651
                 +   +++ +             +e+vnYiRNSVK++vDAydGtv+lY +d++DP++kaw+k+F g l+ p +++p+eLr+h+rYP dlFkvq++ll+k+
  KIR63163.1 602 RvnlQSE-TtdeltgrgtfqlARENVNYIRNSVKATVDAYDGTVRLYEFDQTDPVLKAWNKAFGGdLVLPNDKIPAELREHFRYPADLFKVQRNLLTKF 699
                 *765222.135688999999989****************************************7549******************************** PP

     UPF0182 652 HvtdpevFYnredlWevpke....eeeqpvePyYlilklpgeekeefillspftpssrenliawlaarsdgenygklllyelpkqelvyGpeqiearin 746
                 Hvtdp  FY+ +d+W+vp+     +  q+++PyYl +++pg++ ++f+l+s+ tp+ r+nl+a+++++   +   +l ++elp+q+ + Gp q++++++
  KIR63163.1 700 HVTDPGDFYSAQDFWQVPNVpdnpDGGQKQPPYYLWTQFPGQTAPRFQLTSAVTPNGRQNLAALISGSYV-DGKPQLEVLELPDQTRISGPVQVHQQMT 797
                 *******************9877777777*************************************9984.5669************************ PP

     UPF0182 747 qdpeisqqlsLw 758
                 ++++i+qql+L+
  KIR63163.1 798 NNANIRQQLNLL 809
                 **********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (988 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.57
# Mc/sec: 5227.36
//
Query:       KIR63164.1  [L=83]
Description: hypothetical protein TK50_19995 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.013   15.9   0.8      0.015   15.6   0.8    1.1  1  DUF1772        Domain of unknown function (DUF1772)
      0.093   12.4   1.4          1    9.1   0.3    2.0  2  Oxidored_q3    NADH-ubiquinone/plastoquinone oxidoreductase c
       0.41   10.3   1.6       0.73    9.5   1.6    1.4  1  Baculo_11_kDa  Baculovirus 11 kDa family
        1.7    8.5   5.3        1.3    8.9   0.0    2.0  2  DUF5362        Family of unknown function (DUF5362)


Domain annotation for each model (and alignments):
>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.8   3.4e-06     0.015      26      87 ..       2      76 ..       1      81 [. 0.64

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.4e-06
     DUF1772 26 kqwrrlfkrgkavfpplallsalafa.yla............araasrgarllylaaaal.lllsivpyTllvmvP 87
                + w +++ r + v+++++l + + +a +++            + +++ g  + + ++++l ++ +iv++ ll+m+ 
  KIR63164.1  2 SSWNKWWGRLSTVLGAVVLSVFVPVAaWAStgtgelvveaakR-RSRGGGVGFLGLLCCLvVVGGIVLLVLLLMRN 76
                5688888888888888777666666645558889999999743.33333333333444443666699999999987 PP

>> Oxidored_q3  NADH-ubiquinone/plastoquinone oxidoreductase chain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.019        83      70      94 ..       3      27 ..       1      47 [. 0.55
   2 ?    9.1   0.3   0.00023         1      34      55 ..      51      72 ..      49      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.019
                 TCHHHHHHHHHHHHHHHHHHHTT-- CS
  Oxidored_q3 70 slsrslalaalligllllallllll 94
                 s+++++  ++ ++g+++l +++ ++
   KIR63164.1  3 SWNKWWGRLSTVLGAVVLSVFVPVA 27
                 4555555555555555555544442 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00023
                 -HHHHHHHHHIIIIIHHHHHHH CS
  Oxidored_q3 34 aeFlallqilvYvGAilvlflF 55
                   Fl+ll  lv vG+i+ l+l 
   KIR63164.1 51 VGFLGLLCCLVVVGGIVLLVLL 72
                 67**************999875 PP

>> Baculo_11_kDa  Baculovirus 11 kDa family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.6   0.00016      0.73      36      57 ..      53      74 ..      51      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00016
  Baculo_11_kDa 36 FvLvicglvvfvvivlfilLlv 57
                   F+ ++c+lvv+  ivl++lLl+
     KIR63164.1 53 FLGLLCCLVVVGGIVLLVLLLM 74
                   77789*******9**9999997 PP

>> DUF5362  Family of unknown function (DUF5362)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0003       1.3       4      49 ..       1      45 [.       1      52 [. 0.91
   2 ?    0.6   2.8      0.12   5.2e+02      18      33 ..      54      69 ..      50      75 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0003
     DUF5362  4 islwmkilGvlliilGaltcLsIigiiigvllIivglklfkaakai 49
                +s w k +G l  +lGa+ +Ls++  ++++    +g ++++aak+ 
  KIR63164.1  1 MSSWNKWWGRLSTVLGAV-VLSVFVPVAAWASTGTGELVVEAAKRR 45
                5789*************6.7**********************9975 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.12
     DUF5362 18 lGaltcLsIigiiigv 33
                lG l cL ++g i+ +
  KIR63164.1 54 LGLLCCLVVVGGIVLL 69
                6889999999877644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 545.17
//
Query:       KIR63165.1  [L=450]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-14   53.9   0.0      4e-14   53.3   0.0    1.2  1  SBP_bac_1  Bacterial extracellular solute-binding protein
      7e-13   49.0   0.0    9.9e-13   48.5   0.0    1.1  1  SBP_bac_8  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   4.5e-18     4e-14      22     311 ..      85     355 ..      66     359 .. 0.82

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 4.5e-18
                 HTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE.EE...ES.EEEE.EE CS
   SBP_bac_1  22 hpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkilds.kv...ly.vPly.aa 114
                 ++ + ++++++g  ++++ l+++ a+G+ p D+i+ d++ +a++a+   ll+l+ yv++   +              p+   + +v    + v    ++
  KIR63165.1  85 NNLVSFRVTWQGLPGYYDRLATQAAGGNVP-DLIQLDDTVLAEYARREILLDLGGYVADHRLDLRG---------LPPDLARYgEVdgrTVaVAAAqTT 173
                 54566777777779**************88.****************************9766644.........66666666677778777888845* PP

                 EEEEEETTTHHCTTGGG...SHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHHHHHHHHHHHHHHH CS
   SBP_bac_1 115 rgliYNkdlfekagldp...pwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaatylvklyavanlt 210
                  +l+YN +l+   g+++     +W   v++a +++ +  +   +a++++ sg+  +++  ++ s g++++ ++  g+ + e v++++ ++ + a +   
  KIR63165.1 174 AALVYNRSLLRRLGVAEprtGMSWPAYVDWAARVTRAADGR--VAGTMDPSGDHRALW-LWLRSRGAELYQGRQLGFGANELVDWFELWQNARARR--A 267
                 ***********888888666668*************99988..888899999888887.8888999888888766888888888777777777555..4 PP

                 HHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEE.EEEBTTCSTHHHHHHHHHHH CS
   SBP_bac_1 211 kelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayg.laipkgsknpeaAkkFldfl 308
                    +  + +  +g+  ++l+ +G +a+ +++  +            f++  ++  +el+ a++P+ + +  +   a+  +a + g+ +p+ + ++++fl
  KIR63165.1 268 TPSAALVDQADGGEPTRQLVVTGHTAASFAWAHQ------------FPEFRRQTRDELALAAFPGPPAAQWP--RASMyWAGFRGTRHPALVADVIQFL 352
                 777788888888889999999******9999777............99999***********9988877544..55544******************** PP

                 TSH CS
   SBP_bac_1 309 lsp 311
                 +++
  KIR63165.1 353 TNN 355
                 *97 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   1.1e-16   9.9e-13      14     249 ..      90     355 ..      80     372 .. 0.75

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 1.1e-16
                 EEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GG....GS.TTHHH-HH.HHHTT--TS.----EEEEEEE-EEEEEHHHHHH CS
   SBP_bac_8  14 vnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladls....dl.dnlddltd.alaavgydgklygvPyasetpyvliynkdllek 106
                 ++v+ ++ +++ + l +++a g++pd  +++ ++  la++a +  l dl     d   +l +l++  +++ ++dg + +v  a+ t  +l+yn +ll  
  KIR63165.1  90 FRVTWQGLPGYYDRLATQAAGGNVPD--LIQLDDTVLAEYARREILLDLGgyvaDHrLDLRGLPPdLARYGEVDGRTVAVAAAQTT-AALVYNRSLLRR 185
                 55555667899**************7..67888899**************76664445566696626666688***9999987665.8*********97 PP

                 ...S...---BHHHHHHHHHHHH....HH-SEGG---GGGGGG.THH.......ETTEE---H.....HHH.HHHHHHHHHHHHTT-EE........-S CS
   SBP_bac_8 107 ...a..edpktwdellaaakklk....gkfglpdpasgwlqaa.lla.......kdgksldddg...gkdglkealellkklkdngkty........dt 177
                    a  ++  +w +++++a+ ++    g+++ ++++sg ++a+ l+        ++g          g  +l++++el+++ ++   t+        d 
  KIR63165.1 186 lgvAepRTGMSWPAYVDWAARVTraadGRVAGTMDPSGDHRALwLWLrsrgaelYQGR-----QlgfGANELVDWFELWQNARARRATPsaalvdqaDG 279
                 666578899*********9988533338887788888865544233354332232333.....244666799***********8888777777887688 PP

                 ..--SSTTTTTSBSEEEE-TTHHHHHH-T.TTSEEEE.--S--EEEEEEE...EEEBTTS-HHHHHHHHHHHHHTTS CS
   SBP_bac_8 178 gadavsefanGevaftingswdiaaaqka.gkklgai.vpkqgsfaggkg...lavpknaknedlaAldFlkwltsp 249
                 g+ + +++ +G  a+++++  ++  ++ +  ++l+ + +p + ++++      +a + ++ +++l  +d +++lt++
  KIR63165.1 280 GEPTRQLVVTGHTAASFAWAHQFPEFRRQtRDELALAaFPGPPAAQWPRAsmyWAGFRGTRHPAL-VADVIQFLTNN 355
                 89999**********************6647999988677553444433222377799******9.********964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3114.17
//
Query:       KIR63166.1  [L=277]
Description: phosphoribosylaminoimidazole-succinocarboxamide synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.5e-94  313.7   0.0    1.1e-93  313.5   0.0    1.0  1  SAICAR_synt  SAICAR synthetase


Domain annotation for each model (and alignments):
>> SAICAR_synt  SAICAR synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.5   0.0   6.2e-98   1.1e-93       2     250 ..       4     248 ..       3     250 .. 0.97

  Alignments for each domain:
  == domain 1  score: 313.5 bits;  conditional E-value: 6.2e-98
                  EEE-SSEEEEE-SSTTEEEEEEESEEEECCCTEEEEETTHHHHHHHHHHHHHHHHHH.--BSEEEE......-SSSEEEEE-EEEESEEEEEEEE--H CS
  SAICAR_synt   2 lyeGKvrdvYeledddklllvakDrisAfdvvlkeeipgKGkvltqlsafwfeklek.ipnhliksld.peqlegrsmlvkklkmlpvEvvvRgyltG 97 
                  l++GKvrdvY+  d d l+lva+Dris +dvvl++++p+KG++lt+ls +wfe+l++ +pnh+++ +d p++++gr++ +++l+m+pvE+v+RgyltG
   KIR63166.1   4 LHSGKVRDVYA--DGDDLILVASDRISIYDVVLPTPVPDKGRLLTALSLWWFEQLADlVPNHVVSATDvPAEFAGRAIRCRRLEMVPVECVARGYLTG 99 
                  789********..4668***************************************77******8888888*************************** PP

                  HH.......HH....HH..T--TT-EEEEEEEEEEE--CCCT.S-EE-HHHHH.HTT-HHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEET CS
  SAICAR_synt  98 slwkeykksgkvcgirlpeglkegeklpepiftpstKaeegehDeniseeevvealgteeeaeeieelalavyekaaelaaergiilvDtKlEFGlde 195
                   +++ey+++g v+g+rlp+gl e++ lpepiftpstKa +gehDe+is+e+vv+++g +e+a+++++++l++y + aelaa+rgi+++DtK+E+G   
   KIR63166.1 100 GGLAEYERTGAVSGVRLPRGLVEASILPEPIFTPSTKAPKGEHDEPISYEQVVDKVG-AETAARLRQITLDIYCRGAELAADRGILVADTKIELGWA- 195
                  *********************************************************.**************************************9. PP

                  TTTEEEEES--.STTTEEEEETTT.....GGGB-STHHHHTT-STHHHHHHHHHH CS
  SAICAR_synt 196 edgelvLaDevltpDssRfwdaetyeegkeqeslDKqfvRdwleeveekwkekle 250
                  +dg+lvL+Devlt+DssRfw+ae+y++g+ q s+DKq+vRdw +    +w+++ +
   KIR63166.1 196 ADGTLVLGDEVLTSDSSRFWPAESYQPGRAQFSYDKQYVRDWATG--GGWDKRPP 248
                  59*****************************************99..89988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2037.40
//
Query:       KIR63167.1  [L=495]
Description: glycerol kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-77  260.2   0.0      3e-77  259.5   0.0    1.3  1  FGGY_N       FGGY family of carbohydrate kinases, N-terminal 
    1.2e-63  214.5   1.8    2.3e-63  213.5   1.7    1.6  2  FGGY_C       FGGY family of carbohydrate kinases, C-terminal 
     0.0086   15.6   0.0      0.012   15.2   0.0    1.3  1  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.5   0.0     5e-81     3e-77       1     245 []       5     248 ..       5     248 .. 0.98

  Alignments for each domain:
  == domain 1  score: 259.5 bits;  conditional E-value: 5e-81
                 EEEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTT.EESSEEE-T CS
      FGGY_N   1 lilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDknd.kpLynailw 98 
                 ++ ++D+Gtts++ +v+d+ g++v++aq+e+ +++p++gw+e+d+eeiw+ +  ++r++l++ag  ++  +a+gi++qre++v++D+ + +p+ nai+w
  KIR63167.1   5 YVAAIDQGTTSSRCLVFDRAGEIVSVAQREHRQIFPRPGWVEHDAEEIWDNVRLVVREALDAAGTGAEGLAAVGITNQRETTVVWDRATgRPVANAIVW 103
                 7889*********************************************************************************************** PP

                 T--TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHC....EEEEHHHHHHHHHCT--EEEHHHHCTTTSEETTTTEE-HHHH CS
      FGGY_N  99 kdrrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekie....kflliddyLiwrLtgqfvtdvtnasesmlfnikklewdeell 193
                 +d+rt ++ + l e  +e++l e+tgl l t+f + kl+Wl++n+ + + ++e    +f+++d++Liw+Ltg +vtdvtnas++ml+ + +l+wd+ell
  KIR63167.1 104 QDTRTGPQLRALDEAYGEQRLCERTGLRLATYFAGPKLRWLLDNVDGLRGRAErgevLFGTMDSWLIWKLTGRHVTDVTNASRTMLMGLDTLDWDPELL 202
                 *****************************************************9********************************************* PP

                 HHTT--GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 194 ailgipeelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                 ++lg+p ++LP++++s+e++g+ ++         +gvpv++++gDqqaa++G
  KIR63167.1 203 DALGVPAAMLPEIRSSAEVYGTATDG---P---LAGVPVASALGDQQAALFG 248
                 *********************98774...3...3589**************9 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.92   5.5e+03      42      62 ..     132     153 ..     115     168 .. 0.75
   2 !  213.5   1.7   3.9e-67   2.3e-63       1     197 [.     257     447 ..     257     448 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.92
      FGGY_C  42 gsiavagslvawlldnl.glre 62 
                  ++++ag  + wlldn  glr 
  KIR63167.1 132 LATYFAGPKLRWLLDNVdGLRG 153
                 5678899999999999765544 PP

  == domain 2  score: 213.5 bits;  conditional E-value: 3.9e-67
      FGGY_C   1 akvslGTssflll.vgtkpvisehglltpva..gedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpafs 96 
                 ak+++GT+sflll +g  pvis hgllt++a   e ++ +yaleg+iav+gslv+wl+dnlgl   i+ a+ev e la     ++v d+gg+++vpafs
  KIR63167.1 257 AKCTYGTGSFLLLnTGASPVISSHGLLTTLAyrIEGQPAVYALEGAIAVTGSLVQWLRDNLGL---ISTAAEV-EELA-----RTVDDNGGCYVVPAFS 346
                 79*****************************665569**************************...*******.****.....9*************** PP

      FGGY_C  97 glrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilAa 195
                 gl+ap+w++darg+++gl+ + t++h+arAalea a q+r++++a+++ds ++l+rl+vdGG++ n llmq+lAd+l vpV+r + +e+t+lGaA++A+
  KIR63167.1 347 GLFAPHWRSDARGVVAGLTGYITKGHLARAALEASAWQTREVVDAMNADSDVALRRLRVDGGMTANGLLMQFLADVLDVPVVRSRITETTCLGAAYAAG 445
                 *************************************************************************************************** PP

      FGGY_C 196 va 197
                 +a
  KIR63167.1 446 LA 447
                 98 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.9e-06     0.012       3      65 ..       9      77 ..       8     253 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.9e-06
                 EEE-SSEEEEEEEETTTEEEEEEEE--TTS-......HHH.........HHHHHHHHHHT--GGGECEE CS
  BcrAD_BadFG  3 iDgGsTttkavlmdekgevlgrgitnsanle......svrfeaaekvleealtealerageeeadieet 65
                 iD G+T+ ++ ++d+ ge++  ++   +++       +++ e+ +++++ +++eal++ag+ ++ ++ +
   KIR63167.1  9 IDQGTTSSRCLVFDRAGEIVSVAQREHRQIFprpgwvEHDAEEIWDNVRLVVREALDAAGTGAEGLAAV 77
                 9********************999999666422222257889999****************99997755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3472.29
//
Query:       KIR63168.1  [L=152]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-19   68.9   0.0    4.8e-19   68.5   0.0    1.1  1  HATPase_c_2  Histidine kinase-like ATPase domain
    6.6e-07   29.8   0.0    1.1e-06   29.1   0.0    1.3  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   5.4e-23   4.8e-19       4     123 ..      23     136 ..      21     138 .. 0.94

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 5.4e-23
  HATPase_c_2   4 dpehvrtvrevaeavlrraglseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeepkeslkegGrG 101
                  d ++v ++r+ +++++ ++gl  ++ld+  lav+E++tNav+h+  ++      +rl++++++l++evaD+G+g   + l+d+  +   +++  gG+G
   KIR63168.1  23 DQAQVTELRHSVTSCAHAVGLRGQRLDDFVLAVNELLTNAVRHGGGRGW-----LRLWRQPGRLVCEVADHGRGISSRRLDDRSRP---APDTAGGWG 112
                  6789*****************************************7666.....99******************999999999887...899****** PP

  HATPase_c_2 102 lalikglvDevey..dgegnvvtm 123
                  l l ++l+D +++  ++ g++v++
   KIR63168.1 113 LWLARELSDAMDVetGPAGTTVRI 136
                  ***********9988999****97 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.2e-10   1.1e-06       7     110 ..      52     140 ..      47     142 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 1.2e-10
                 HHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEE CS
   HATPase_c   7 rqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttft 105
                   ++++l++Nav++   +g++++++ ++ ++lv +v D G+Gi+   l+                   G Gl ++++l++ m+    ve+ p  Gtt++
  KIR63168.1  52 VLAVNELLTNAVRH--GGGRGWLRLWRQPGRLVCEVADHGRGISSRRLDDRSR--------PAPDTAGGWGLWLARELSDAMD----VETGP-AGTTVR 135
                 6689*********9..79********6669*******************3333........2223467899*********666....65566.799999 PP

                 EEEES CS
   HATPase_c 106 ftlpl 110
                 + +pl
  KIR63168.1 136 IGMPL 140
                 98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.49
# Mc/sec: 933.21
//
Query:       KIR63169.1  [L=377]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-08   35.6   0.0    1.7e-08   34.9   0.0    1.3  1  HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like A
    6.1e-05   23.5   3.3    6.1e-05   23.5   3.3    2.7  3  HisKA_3    Histidine kinase


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.9e-12   1.7e-08      14     111 ..     292     375 ..     282     376 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.9e-12
                 HHHHHHHHSTTTEEEEEEEEEE.TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEEESS CS
   HATPase_c  14 vdNavkfatkageieveikase.ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttftftlple 111
                 +dN  ++   +g+ +v i+  e +++++sv+D G+Gip   l+       +       +g+ G+  si  ++++ +gG+++++s+pg Gt++ +t+p +
  KIR63169.1 292 LDNVRRH--AGGRAWVLIED-EgETVTVSVRDEGPGIPAGRLD----EAAR-------QGRLGVAQSIRGRVAD-LGGTVTITSTPGAGTEVELTVPRT 375
                 6788887..68999*****5.359***************9999....3344.......69**************.9*******************9975 PP

>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.76   6.8e+03      22      46 ..     154     178 ..     151     180 .. 0.71
   2 !   23.5   3.3   6.8e-09   6.1e-05       1      33 [.     186     218 ..     186     238 .. 0.71
   3 ?   -1.2   0.0      0.34   3.1e+03       5      20 ..     280     295 ..     278     303 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.76
                 HHHHHHHHHTTT-HHHHHHHHHHHH CS
     HisKA_3  22 lqlelakrllekdpekaaeqlreie 46 
                 l+++++ +++++ +  a+++l+++ 
  KIR63169.1 154 LMAGAVVGHVARLAVTAEQRLHRAV 178
                 6677777777777778888887775 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 6.8e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrllek 33 
                 ER+r+AR++HDsv q+L++++ +   + +++ +
  KIR63169.1 186 ERERLARDIHDSVLQVLALVQRRGAHLDGEAGE 218
                 9*****************998776666665544 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHHHHHH CS
     HisKA_3   5 iARELHDsvgqsLsai 20 
                 +AREL D  g +L  +
  KIR63169.1 280 VARELADATGATLDNV 295
                 5777777666666444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2702.17
//
Query:       KIR63170.1  [L=190]
Description: hypothetical protein TK50_20030 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       186  (0.0103743); expected 358.6 (0.02)
Passed bias filter:                      119  (0.00663729); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1398.62
//
Query:       KIR63171.1  [L=259]
Description: sulfate transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.4e-08   32.2   0.0    1.9e-07   31.1   0.0    1.5  1  HATPase_c_2  Histidine kinase-like ATPase domain
    0.00043   20.6   4.0     0.0014   18.9   2.9    2.5  2  STAS_2       STAS domain
  ------ inclusion threshold ------
      0.069   13.0   0.0       0.44   10.4   0.0    2.1  2  DUF448       Protein of unknown function (DUF448)


Domain annotation for each model (and alignments):
>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   3.2e-11   1.9e-07       8     109 ..     146     234 ..     139     250 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 3.2e-11
  HATPase_c_2   8 vrtvrevaeavlrraglseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpg.fdpetlpdpteeepkeslkegGrGlal 104
                   r++r  +++  +r+g+ + l++   +av+E+++N+v ha+      p+++r+  ++++l++ v+D+ +   +++   +p           gGrGl+l
   KIR63171.1 146 ARQARALVTDGCARWGIGA-LAEAGCIAVTEMVNNVVAHART-----PMTLRMAPGDGTLHLGVRDQSRRqPRYTGVTPP--------HLAGGRGLLL 229
                  5677777777777777764.566889***************5.....9**********************5666554444........569******* PP

  HATPase_c_2 105 ikglv 109
                  i +++
   KIR63171.1 230 IDTVA 234
                  *9876 PP

>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   2.9   2.4e-07    0.0014       1      42 [.      38      80 ..      38      93 .. 0.86
   2 ?   -3.0   0.0       1.7   9.9e+03      35      60 ..     215     240 ..     209     241 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.4e-07
      STAS_2  1 LsLsGeldldtaaelreqlleal..aagaevvvDlsgvervDsa 42
                L+L+G+ld++  a++r++ll +l  ++g +vvvDl++++  D a
  KIR63171.1 38 LRLTGVLDAAGTAAVRDALLVRLcdRPG-PVVVDLTRLRLTDPA 80
                89*********************98878.*********999876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.7
      STAS_2  35 gvervDsaalalLlalartarargrr 60 
                 gv+  ++a+ + Ll     ar+ g++
  KIR63171.1 215 GVTPPHLAGGRGLLLIDTVARRWGST 240
                 67777777777777777777776665 PP

>> DUF448  Protein of unknown function (DUF448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.17     1e+03      14      39 ..      56      83 ..      51      93 .. 0.71
   2 ?   10.4   0.0   7.4e-05      0.44      24      64 ..      98     138 ..      85     146 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.17
      DUF448 14 eLiRvvrtpegevvlDltgk...lpGRGa 39
                 L+R++ +p   vv+Dlt+     p RG 
  KIR63171.1 56 LLVRLCDRPGP-VVVDLTRLrltDPARGL 83
                58899988877.99999875333466665 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 7.4e-05
      DUF448  24 gevvlDltgklpGRGaYvcpseeclekaikkkaleralkak 64 
                 g +v+D+tg + G G  vc++ +  e+a+ +  ++ a  ++
  KIR63171.1  98 GLLVVDPTGAAAGPGLPVCANLAEAEAALTRAPMAAATTTA 138
                 4589************************9998888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.50
# Mc/sec: 1571.06
//
Query:       KIR63172.1  [L=333]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-49  166.8   0.6    4.9e-49  166.4   0.6    1.1  1  adh_short     short chain dehydrogenase
    9.1e-37  126.8   0.4    1.3e-36  126.4   0.4    1.1  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
      6e-12   45.8   1.2    9.1e-12   45.2   1.2    1.3  1  KR            KR domain
  ------ inclusion threshold ------
      0.012   15.0   0.0      0.034   13.5   0.0    1.6  2  DUF1776       Fungal family of unknown function (DUF1776)
      0.055   12.9   0.2      0.076   12.5   0.2    1.3  1  Epimerase     NAD dependent epimerase/dehydratase family
       0.12   12.3   0.0       0.42   10.5   0.0    2.0  1  NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half 
       0.49   10.2   3.5        1.1    9.0   3.5    1.6  1  DFP           DNA / pantothenate metabolism flavoprotein


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   0.6   1.9e-52   4.9e-49       2     190 ..      11     202 ..      10     207 .. 0.98

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 1.9e-52
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 vv+ tGassGIG a+a++la++Ga v++++rse++le+va+ ++e+g +al++++Dvtd  +ve l ++a++++g++d+ +nNA+++ +g f e+  +e
  KIR63172.1  11 VVVLTGASSGIGTATAYALARRGAAVALAARSEDALERVAARCRELGGQALVVPTDVTDPVAVEILAARAAEEFGRIDAWINNAAVSAVGLFDEIPVRE 109
                 89************************************************************************************************* PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT...EEEEEEEESSBSSHHHHHH CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptg...irvnavaPGlvdTdmakel 190
                 ++rv+evNl g+++ +ra+lp++ ++ +G  vn +Sv ++v+++ ++aY A+K++++gl++++++el+ tg   ++v +v P+ +dT++ + +
  KIR63172.1 110 FRRVLEVNLLGTVHGMRAALPYLAAAGGGVLVNNASVLAEVAMPYQSAYNATKHGIRGLADTVRQELRLTGrgnVSVCTVLPASIDTPFFRHA 202
                 ********************************************************************999999*************988765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   0.4   4.9e-40   1.3e-36       1     183 [.      16     203 ..      16     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 126.4 bits;  conditional E-value: 4.9e-40
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae..vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga sgIG a+A ala++Ga v+l+ ++e+a +rv++  +elg +  v+++DVtd+ +ve l+++++e+fg++D  +nna+++    g f e++  ef
    KIR63172.1  16 GASSGIGTATAYALARRGAAVALAARSEDALERVAARCRELGGQalVVPTDVTDPVAVEILAARAAEEFGRIDAWINNAAVSAV--GLFDEIPVREF 110
                   899***************************99999999999977456*************************************..*********** PP

                   HHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHH...GGGTEEEEEEEE--BHCTGGGGST CS
  adh_short_C2  96 draldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvel...gpkgiRvNavspgpikTlaasgik 183
                   +r+l+vnl ++++ ++aalp l+++g g +vn +sv ae+++p ++ay+a+K+++ +l+ ++  el   g+ ++ v +v p  i+T+  ++++
    KIR63172.1 111 RRVLEVNLLGTVHGMRAALPyLAAAGgGVLVNNASVLAEVAMPYQSAYNATKHGIRGLADTVRQELrltGRGNVSVCTVLPASIDTPFFRHAA 203
                   ********************644444699***************************99888888764447899*************9877665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   1.2   3.5e-15   9.1e-12       1     165 [.      10     174 ..      10     186 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 3.5e-15
                 SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT CS
          KR   1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkllee 99 
                 +++++tG+  g+G+++a  la++ga+ ++l +Rs+   ++ ++  a++++lg +  vv+ Dv+d+ ave l +++ +e+++i   i+ A v++ +l++e
  KIR63172.1  10 AVVVLTGASSGIGTATAYALARRGAA-VALAARSE---DALERVAARCRELGGQALVVPTDVTDPVAVEILAARAAEEFGRIDAWINNAAVSAVGLFDE 104
                 57899*******************85.89999993...344456788889999********************************************** PP

                 --HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHH CS
          KR 100 mtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrs 165
                     ++++vl+  + G+ +  ++  +        ++v  +S+ + + ++ q++Y a+ + + +la++ r+
  KIR63172.1 105 IPVREFRRVLEVNLLGTVHGMRAALPylaaAGGGVLVNNASVLAEVAMPYQSAYNATKHGIRGLADTVRQ 174
                 ************999998755554443555778899*********************9999999987665 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.66   1.7e+03       4      40 ..       9      45 ..       8      54 .. 0.81
   2 ?   13.5   0.0   1.3e-05     0.034     105     186 ..      99     177 ..      94     190 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.66
     DUF1776  4 dvvlvlGsptePltRsialDLerrGFiVfvtvesaee 40
                d v+vl  +   +  + a+ L rrG  V + ++s++ 
  KIR63172.1  9 DAVVVLTGASSGIGTATAYALARRGAAVALAARSEDA 45
                56777777888899999********999998888875 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.3e-05
     DUF1776 105 tgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelr 186
                 +g +++ip+ +++ +l+ +ll ++  + a lp l++       ++v n+s+++++ +p+++    +   ++ l+ + ++elr
  KIR63172.1  99 VGLFDEIPVREFRRVLEVNLLGTVHGMRAALPYLAA---AGGGVLVNNASVLAEVAMPYQSAYNATKHGIRGLADTVRQELR 177
                 78999******************************9...789***************************************9 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2     3e-05     0.076       1      89 [.      12     111 ..      12     176 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-05
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHH....HHHHHH.T-SEEEE--S---HHHHHHSHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsale....rlfkee.qpdavihlAavggvaassedpad 86 
                 +++tGa+  iG+a++ al+++g  v   +r ++a ++ +             +v  d+td++a+e    r+ +e+ ++da i+ Aav+ v+   e p +
  KIR63172.1  12 VVLTGASSGIGTATAYALARRGAAVALAARSEDALERVAA--RcrelggqaLVVPTDVTDPVAVEilaaRAAEEFgRIDAWINNAAVSAVGLFDEIPVR 108
                 578*******************999988888555444333..255889*9988999999999765222255566679***********99987777766 PP

                 HHH CS
   Epimerase  87 fie 89 
                  ++
  KIR63172.1 109 EFR 111
                 544 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00016      0.42      25      59 ..     161     194 ..     150     196 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
  NIR_SIR_ferr  25 qlraladiaekygsgeirlTtrQnlqlhgvpeedl 59 
                   ++ +++ +a++    e+rlT r n+ ++ v ++ +
    KIR63172.1 161 TKHGIRGLADTVR-QELRLTGRGNVSVCTVLPASI 194
                   788999****999.***********9999988776 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.5   0.00044       1.1      18      93 ..       9      97 ..       3     100 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00044
                CTTEEEEE----HHHHHHHHHHHHTT-EEEEEE-S-.SS--..........-TT-...EEEE--SHHHHHHHHHHHHTT-SEEEE---S- CS
         DFP 18 DpVRfisNrSSGkmGyalAeaaaarGaeVtlvsgpv.slet..........pegv...evvkvesaeemleaveealkeadivimaAAva 93
                D V +++  SSG  G a A a+a+rGa V l + +  +le           ++ v   +v++   +e +++ + e++ + d+ i  AAv+
  KIR63172.1  9 DAVVVLTGASSG-IGTATAYALARRGAAVALAARSEdALERvaarcrelggQALVvptDVTDPVAVEILAARAAEEFGRIDAWINNAAVS 97
                8999********.6*****************98775355543334443332111201123333334444555556666667777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2492.20
//
Query:       KIR63173.1  [L=400]
Description: glycosyl transferase family 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-30  104.5   0.0    6.6e-30  103.9   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
      2e-26   93.4  13.3      2e-26   93.4  13.3    2.6  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    1.1e-25   90.6   4.2      2e-25   89.7   2.4    2.1  2  Glyco_transf_4   Glycosyltransferase Family 4
    2.7e-24   86.1   0.6    5.3e-24   85.2   0.1    1.8  2  Glyco_trans_1_4  Glycosyl transferases group 1
    2.7e-09   37.2   0.0    4.8e-09   36.4   0.0    1.4  1  Glyco_trans_4_2  Glycosyl transferase 4-like
    2.4e-06   27.8   0.0    5.3e-06   26.7   0.0    1.6  1  Glyco_trans_1_2  Glycosyl transferases group 1
    0.00082   19.5   0.1      0.015   15.5   0.0    2.7  2  NAD_binding_8    NAD(P)-binding Rossmann-like domain
     0.0021   17.8   0.1      0.036   13.8   0.0    2.2  2  Glyco_transf_5   Starch synthase catalytic domain


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.0   2.9e-33   6.6e-30      12     160 ..     206     357 ..     199     368 .. 0.94

  Alignments for each domain:
  == domain 1  score: 103.9 bits;  conditional E-value: 2.9e-33
                      TTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.........STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEE CS
  Glycos_transf_1  12 nekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG........ngeeekelkklaeelelsdnviflgevsredleellknadifv 97 
                      ++++  ilsvg l++  g+d li+a++l       ++ lviaG        + +e  +l++lae  ++ ++v+++g v+++++ +++++ad+++
       KIR63173.1 206 RDQRSRILSVGGLTPGHGHDDLIRAMRL-----VGDAELVIAGgppadqlaGHAEARRLRELAERTGVAEQVTLVGAVPHDQMATWYRSADVVA 294
                      5677889********************6.....5899**************999**************************************** PP

                      EEESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHH CS
  Glycos_transf_1  98 lpsisEgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledee 160
                      ++ ++ + G v lEAma+g+pv+ +++gg+a+ v+d++tG lv+p+++ al   +r+ll d+ 
       KIR63173.1 295 CTPHYSSAGRVSLEAMACGVPVVGYAMGGIADAVVDEVTGKLVPPGDVRALGMTLRRLLADNA 357
                      ************************************************************984 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4  13.3   8.8e-30     2e-26       2     160 .]      22     191 ..      21     191 .. 0.86
   2 ?   -0.9   5.2      0.88     2e+03      72     129 ..     288     355 ..     215     395 .. 0.49

  Alignments for each domain:
  == domain 1  score: 93.4 bits;  conditional E-value: 8.8e-30
  Glyco_trans_4_4   2 GigryvaelaraLaarGheVtvltpapapgape.leedgvrvhrlpvprr.psplad.laalralrrll...rqrrerpdvvhahsptaglaar 89 
                      G + ++a++a++La rGh+V+v+ ++++p+  + +e dg rv r+pv+++ p p+a  + ++  + r+l   ++  + p vvh h++ +glaa+
       KIR63173.1  22 GTREHIARVAAELAGRGHDVHVYERRDDPALAAtAEVDGYRVERVPVGPAaPMPTAElVGHVSEFGRWLadrWAGGWSPEVVHGHYWVGGLAAA 115
                      67789********************999996654999*********99983456665245999*****999888******************** PP

  Glyco_trans_4_4  90 larrrrgiplvvtlhglllrrg.....sgavrrlyralerrllrradavlvvseaeaeelralgvpadrvvvvpng 160
                      +a r ++ip+v+t+h+l +++      +   +  + +ler+l r +d  ++ +++e++el+++g++++ v+ vp g
       KIR63173.1 116 HAVRETDIPVVQTFHSLGVEQLrhlgpGYDGPGTRIPLERALTRAVDIAVAQCNDEVDELTRMGLQRSSVAMVPTG 191
                      **9999*********87766652221211133456889************************************87 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.88
  Glyco_trans_4_4  72 erpdvvha..hsptaglaarlarrrrgiplvvtlh............glllrrg..sgavrrlyralerrllrr 129
                      +  dvv +  h++ ag + + a  + g+p+v  +             g         + + r++ +  rrll+ 
       KIR63173.1 288 RSADVVACtpHYSSAGRVSLEAM-ACGVPVVGYAMggiadavvdevtG-----KlvPPGDVRALGMTLRRLLAD 355
                      33445544223444555554444.666666655543333333222221.....122111222222222222222 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   2.4     9e-29     2e-25       3     170 .]      22     196 ..      20     196 .. 0.85
   2 ?    0.3   0.0      0.27     6e+02      72     101 ..     289     318 ..     226     360 .. 0.77

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 9e-29
  Glyco_transf_4   3 GverhvleLaraLarrGheVtvvtpgddgpleeev.......elvvrvprvplpllkrllrslaflrrlr.rllkrekpDvvHahspaalgaall 89 
                     G   h+ ++a +La rGh+V+v+ ++dd++l+          e+v  +p+ p+p  +  ++   f r l+ r++  + p vvH h+++ ++aa++
      KIR63173.1  22 GTREHIARVAAELAGRGHDVHVYERRDDPALAATAevdgyrvERVPVGPAAPMPTAELVGHVSEFGRWLAdRWAGGWSPEVVHGHYWVGGLAAAH 116
                     56679******************999999999888977766666666666667777777777777666651455555****************99 PP

  Glyco_transf_4  90 alrrrlgiplVltvHglye.krllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDler 170
                     a r  ++ip+V t+H+l   + ++ +    +   +  ler l r++d  +a ++ + del + +g++++ ++++p+GvD+++
      KIR63173.1 117 AVRE-TDIPVVQTFHSLGVeQLRHLGPGYDGPGTRIPLERALTRAVDIAVAQCNDEVDELTR-MGLQRSSVAMVPTGVDTDQ 196
                     9998.*************996666666666677778999***********************.*****************95 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.27
  Glyco_transf_4  72 kpDvv.HahspaalgaallalrrrlgiplVl 101
                       Dvv  + ++ ++g + l +++  g+p+V 
      KIR63173.1 289 SADVVaCTPHYSSAGRVSLEAMA-CGVPVVG 318
                     57888544455555666666665.8888886 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.9   8.8e+03      37     120 ..      21      48 ..      19      58 .. 0.34
   2 !   85.2   0.1   2.4e-27   5.3e-24       2     134 .]     210     355 ..     209     355 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.9
                      ES---...HHHHHHHTT-T.TEEEE---THHHHHHHH-SEEEE-----SHHHHHHHHTT-EEEE-TGGGTTT--TTSSEE--TT- CS
  Glyco_trans_1_4  37 vGdgp.rpeeleelaagleerveftGfvedlaellaaadvfvaPsegfglkllEamaaglpvVatdvggiaevvgengllvppgd 120
                      vG  +   +++ +++ag  ++v++  ++                                                        d
       KIR63173.1  21 VGTREhI-ARVAAELAGRGHDVHVYERR--------------------------------------------------------D 48 
                      4422211.12222222222345555544........................................................3 PP

  == domain 2  score: 85.2 bits;  conditional E-value: 2.4e-27
                      EEEEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---...........HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--.. CS
  Glyco_trans_1_4   2 pvilfvGrleenvkgvdllleavpllrkkdvrlvivGdgp.rp........eeleelaa..gleerveftGfv..edlaellaaadvfvaPs.. 80 
                       +il vG l++  +g+d l++a+ l+   d++lvi+G gp  +        ++l+ela+  g++e+v+++G v  +++a ++++adv+ ++   
       KIR63173.1 210 SRILSVGGLTPG-HGHDDLIRAMRLVG--DAELVIAG-GPpADqlaghaeaRRLRELAErtGVAEQVTLVGAVphDQMATWYRSADVVACTPhy 299
                      689******655.9*************..67******.654334777777788888776799***********9666***********887778 PP

                      ---SHHHHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  81 egfglkllEamaaglpvVatdvggiaevv..gengllvppgdpealaeailrLled 134
                       + g + lEama+g+pvV  ++ggia++v  +++g lvppgd+ al   + rLl+d
       KIR63173.1 300 SSAGRVSLEAMACGVPVVGYAMGGIADAVvdEVTGKLVPPGDVRALGMTLRRLLAD 355
                      899**********************9988899*********************987 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   2.1e-12   4.8e-09      12     113 ..      26     138 ..      20     168 .. 0.76

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 2.1e-12
  Glyco_trans_4_2  12 htlrlakeLakrgyeVhvitp.kkga.kdeleaegihvhrlkvdrkgpleylka........fkl.kklikkikPDvvhahyakpygllgslaa 94 
                      h  r+a eLa rg++Vhv  + +++a     e +g++v r++v+ + p+ ++ +        ++l  +     +P vvh hy +  gl+++ a 
       KIR63173.1  26 HIARVAAELAGRGHDVHVYERrDDPAlAATAEVDGYRVERVPVGPAAPMPTAELvghvsefgRWLaDRWAGGWSPEVVHGHY-WVGGLAAAHAV 118
                      8899*****************77888999999************88877777644667776667834455568*********.55588887765 PP

  Glyco_trans_4_2  95 rlsgvipvvlsvwGldv..lk 113
                      r +  ipvv++++ l+v  l+
       KIR63173.1 119 RET-DIPVVQTFHSLGVeqLR 138
                      555.6**********994443 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.3e-09   5.3e-06      10      89 ..     301     382 ..     288     385 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.3e-09
  Glyco_trans_1_2  10 spnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydhraeq 89 
                      s   + +Ea+acG++++  +  g+++ + ++ ++ l+   d+  l   +r+lla+ + r a ++aa  rv+  +t+++ a  
       KIR63173.1 301 SAGRVSLEAMACGVPVVGYAMGGIADAVVDEVTGKLVPpgDVRALGMTLRRLLADNAGRFAYGHAAVDRVRCSYTWERTAGA 382
                      4556779************99********************************************************98865 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.6e-06     0.015      12      46 ..      31      64 ..      28      78 .. 0.83
   2 ?    0.6   0.0      0.31   6.9e+02       7      20 ..     110     123 ..     109     144 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.6e-06
                   HHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEEC CS
  NAD_binding_8 12 AylLakagfdvlllekrdrlGGraasyevpgvrvd 46
                   A++La +g+dv+++e+rd++   aa++ev+g+rv+
     KIR63173.1 31 AAELAGRGHDVHVYERRDDPA-LAATAEVDGYRVE 64
                   899999**************5.6888888886665 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.31
                    HHHHHHHHHHCCTE CS
  NAD_binding_8   7 sGlvaAylLakagf 20 
                    +Gl+aA++ ++ ++
     KIR63173.1 110 GGLAAAHAVRETDI 123
                    79******998533 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.08   1.8e+02      21      39 ..      26      44 ..      22      69 .. 0.85
   2 !   13.8   0.0   1.6e-05     0.036     128     178 ..      96     138 ..      76     165 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.08
  Glyco_transf_5 21 vvgaLpkaLaklghdvrvi 39
                    +++  + +La +ghdv+v 
      KIR63173.1 26 HIARVAAELAGRGHDVHVY 44
                    6778899**********96 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.6e-05
  Glyco_transf_5 128 klgwkpdvihahDWhtalvpallkelykerglfkkiktvftiHNlayqgrf 178
                       gw p+v+h h W  +l++a +          ++i++v t H+l  ++ +
      KIR63173.1  96 G-GWSPEVVHGHYWVGGLAAAHAVRE-------TDIPVVQTFHSLGVEQLR 138
                     3.899**************6654443.......35*********9887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2893.56
//
Query:       KIR63174.1  [L=272]
Description: histidinol phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-47  162.7   0.0    1.5e-47  162.4   0.0    1.0  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.4   0.0   8.3e-52   1.5e-47       9     263 ..      11     262 ..       5     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: 162.4 bits;  conditional E-value: 8.3e-52
                 HHHHHHHHHHHHHHHTTTSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCCCT.SSSSSEEEEEEEEETHHHHHHT-SG-E CS
  Inositol_P   9 avelaakagevlreefsenelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakgekseltedgltwivDPiDGTknFvrgipqva 107
                 a+ la +a ++ + +f+  +l +e+k    +  +v++ad ave+ i++ la+++p++ +lgee +++ +    t+ g+ w+vDPiDGTknFvrg p +a
  KIR63174.1  11 AHLLADAADAISTARFRALDLRVEAKP---DLTPVSDADTAVEREIRALLAAHRPGDGLLGEEYGGQPS---ATPGGRRWVVDPIDGTKNFVRGVPVWA 103
                 555666777777777776666666655...7889*****************************888888...79999********************** PP

                 EEEEEEETTEEEEEEEEETTTTEEECEETTTEEEETC.....EEEEECTTSEGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCH.EEEBESSHHHHH CS
  Inositol_P 108 VsigllvegkpvlGviaqPllgqlysaakgkGaflng.....eklplsrappiseallvtlfavssrkdtseasllekvesavsae.gvrsvgssalkl 200
                 ++i+ll+ ++pvlG++ +P+lg+++++a g Ga+         ++++s  + + +a    +f +ss + ++ a lle v+++ +++ + r++g+  + +
  KIR63174.1 104 TLIALLEGDRPVLGLVSAPALGRRWWGALGAGAYAGPdaahgTPIRVSAVGRLADA----SFCYSSLSGWESAGLLEPVLQLMRDTwRSRAYGDF-YGY 197
                 *********************************66446666677888877755555....5678**********************666677665.678 PP

                 HHHHHTSTSEEEEEC.EBHHHHHHHHHHHHHTTEEEEESSSC....SSSTTSSEEEEESCHHHHHHH CS
  Inositol_P 201 aavaeGkadaylefgrekkWDhAAGeaileeaGGvvtdakge....grlllargiiaanqkelaell 263
                  ++aeG +d+++e + +  WD+AA + i++eaGG++td++g+    g +  +++ +a+n + l++ +
  KIR63174.1 198 MLLAEGALDVMVEPE-LSLWDVAALVPIVTEAGGTFTDLAGRpapgGDASVENSAVASN-GPLHADI 262
                 88*************.**************************77744444444444444.4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       170  (0.00948185); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1731.57
//
Query:       KIR63175.1  [L=235]
Description: hypothetical protein TK50_20070 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-58  197.3   0.0    2.6e-58  197.1   0.0    1.0  1  SRAP      SOS response associated peptidase (SRAP)


Domain annotation for each model (and alignments):
>> SRAP  SOS response associated peptidase (SRAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.1   0.0   1.5e-62   2.6e-58       1     219 []       1     211 [.       1     211 [. 0.88

  Alignments for each domain:
  == domain 1  score: 197.1 bits;  conditional E-value: 1.5e-62
        SRAP   1 MCgRyaltlapeelaeeleae.eedkelrpsynvaptqkvpvvvaeeeeeeeeeeerklqamkwGlvPswakdpkklglktiNaRsetlaekplfrsal 98 
                 MCgRya+t+++ +l++ +e++ e++ + r+s+nvapt++vp+v+ + e+      +r l+a +wG++P w+k+p   g+++iNaR+et+a++++++ a+
  KIR63175.1   1 MCGRYATTRSAVDLSAVFESSdETQGRARSSHNVAPTTTVPLVRLTPEG------HRALSAGRWGFLPPWSKSP-AAGARMINARAETVATSRAYAPAF 92 
                 *******************65333333899*************944444......589***************9.899********************* PP

        SRAP  99 kkkRcvvpadGFYEW.kkkgkekqPyfikrkdgkllalAGLydvweeegeeeklytytiiTteankqlaelHdRmPviLeeeelraWLdprkedskelq 196
                 +++Rc+vpadG+YEW +  +  +qPyf++++d+++lalAG+++vw  eg + ++ t++++Tt+a  +la++H+RmP+ L+++++++WL p    ++e +
  KIR63175.1  93 ARRRCLVPADGWYEWvRLPEGGRQPYFMTPADSSVLALAGIWSVW--EGPAGPVLTFSVLTTAAVGELARVHERMPLLLPRDRWASWLGP----TDEPA 185
                 ***************65455789**********************..55568**************************************....34444 PP

        SRAP 197 ellkpaee...eelevypVskeVnkv 219
                 +ll+p +    + le++pV ++V++v
  KIR63175.1 186 DLLTPPDPgwlAGLEIRPVGSAVGNV 211
                 5555554335589**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       193  (0.0107647); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1742.45
//
Query:       KIR63176.1  [L=130]
Description: transcription factor WhiB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-22   78.3   3.1    4.9e-22   78.3   3.1    1.5  2  Whib      Transcription factor WhiB


Domain annotation for each model (and alignments):
>> Whib  Transcription factor WhiB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.34   6.1e+03       6      25 ..      13      32 ..      10      33 .. 0.63
   2 !   78.3   3.1   2.7e-26   4.9e-22       1      64 []      34      97 ..      34      97 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.34
        Whib  6 aCrgedpelffpekgdreee 25
                a++  dp+l  + +++r++e
  KIR63176.1 13 AAARRDPRLLRALRERRQDE 32
                55667787777766666655 PP

  == domain 2  score: 78.3 bits;  conditional E-value: 2.7e-26
        Whib  1 WreraaCrgedpelffpekgdreeeAkavCarCpVrreCleealeegeeyGvwGGltereRraL 64
                Wr+r+ C++ dpe+ffp +++ +++A a+C++C+V+  Cl++ale g+ +GvwGG+t reRra+
  KIR63176.1 34 WRTRGTCQSVDPETFFPAPNEPADAAVALCRSCDVQGSCLAWALEVGDCHGVWGGTTPRERRAM 97
                **************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 924.77
//
Query:       KIR63177.1  [L=205]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.21   11.4   6.7       0.62    9.9   6.8    1.8  2  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.1   1.8e+03      69      83 ..      24      38 ..      21      41 .. 0.85
   2 ?    9.9   6.8   3.4e-05      0.62      13     110 ..      38     135 ..      29     157 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.1
                   TTCEEEEEEETHHHH CS
  Abhydrolase_3 69 dpsrivlaGdSaGGn 83
                    p+ + ++G  aGG 
     KIR63177.1 24 PPQALLVLGHGAGGD 38
                   578899*******96 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 3.4e-05
                    -TTTT.HHHHHHHHHHHTSEEEEEE..---TTT.S-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEE CS
  Abhydrolase_3  13 sldth.dalcrelakelgavvvsvd..YrlAPe.hpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepkvagqv 104
                    ++d +    +r+ a+++g vv  v   Yr A   +p+Pa +    +a+  ++++  + +     +v++G S G+  a  +a ++ ++    va  +
     KIR63177.1  38 DVDAPdLGALRDAAARAGLVVCRVTqpYRVAGRrAPAPAGH--LDEAWTAVLAELRRRHPAVPALVVGGRSSGARVACRTATAVGAD--AVVALAF 129
                    5555533578999********999666****6415666654..334444444443445766778*****************999997..3566666 PP

                    EESE-S CS
  Abhydrolase_3 105 liyPvt 110
                     ++P  
     KIR63177.1 130 PLHPPG 135
                    677743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1355.88
//
Query:       KIR63178.1  [L=277]
Description: RNA polymerase subunit sigma-24 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-17   62.6   0.2    4.4e-17   61.6   0.2    1.5  1  Sigma70_r2       Sigma-70 region 2
    7.6e-16   57.5   0.0    1.7e-15   56.4   0.0    1.6  1  Sigma70_r4_2     Sigma-70, region 4
    1.2e-11   44.0   0.0    4.7e-11   42.0   0.0    2.1  2  Sigma70_r4       Sigma-70, region 4
     0.0016   18.4   0.1     0.0029   17.5   0.1    1.4  1  Sigma70_ECF      ECF sigma factor
  ------ inclusion threshold ------
      0.084   12.6   0.0       0.12   12.1   0.0    1.2  1  TGFb_propeptide  TGF-beta propeptide


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.2   1.2e-20   4.4e-17       6      70 ..      93     155 ..      90     156 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 1.2e-20
                 HHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2   6 lplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70 
                  +++++   r+++++adaeDlvQe++l+++ a ++f+  +g++++awl+ri +n+ i+ +Rkr+r
  KIR63178.1  93 VDQLYAAGLRMTRNPADAEDLVQETYLKAYAAFHQFE--QGTNLKAWLYRILTNTYINSYRKRQR 155
                 57999999**************************999..6667********************98 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   4.6e-19   1.7e-15       4      54 .]     197     247 ..     194     247 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 4.6e-19
                   HHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   4 lrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   + eal++Lpe+ r ++ l ++eg+sykE+A ++g++ gtV srl+R+r+ L
    KIR63178.1 197 VKEALQQLPEEFRLAVYLTDVEGFSYKEVADIMGTPIGTVMSRLHRGRRNL 247
                   679*********************************************976 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.71   2.5e+03      38      48 ..     182     192 ..     181     194 .. 0.77
   2 !   42.0   0.0   1.3e-14   4.7e-11       1      50 []     200     249 ..     200     249 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.71
                 HHHHHHHHHHH CS
  Sigma70_r4  38 rqiekrAlrkL 48 
                 r+ e++Al++L
  KIR63178.1 182 RSAETEALDRL 192
                 67788888887 PP

  == domain 2  score: 42.0 bits;  conditional E-value: 1.3e-14
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 aL++Lpe+ r  ++l  +eg +++E+++++g + ++V ++++r++r+LRk
  KIR63178.1 200 ALQQLPEEFRLAVYLTDVEGFSYKEVADIMGTPIGTVMSRLHRGRRNLRK 249
                 8************************************************7 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1     8e-07    0.0029      51     180 ..     112     248 ..      95     253 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 8e-07
  Sigma70_ECF  51 aLvfeaflrlvdkekfpdlsgrdhlfalaaeamrrilidhaRrrkrq......kRGGdvvraeldeeeds.vdsdspdelleL..dealerllsldpe 139
                   Lv e +l++    +f+++++ ++l a + ++     i+  R+r+rq          d+++ae ++++ s + s +++ l  L   +  e l++l++e
   KIR63178.1 112 DLVQETYLKAYA--AFHQFEQGTNLKAWLYRILTNTYINSYRKRQRQpiqaptEEITDWQLAEAESHTSSgLRSAETEALDRLpdSDVKEALQQLPEE 207
                  489999999887..899999999999999999999999999999998322222233566666655555444344555555566213456778889999 PP

  Sigma70_ECF 140 qarlvelrkleGlsveEiAeklgvskrtverrlalaRawle 180
                   +  v l  +eG+s +E+A+ +g    tv  rl+  R  l+
   KIR63178.1 208 FRLAVYLTDVEGFSYKEVADIMGTPIGTVMSRLHRGRRNLR 248
                  999****************************9998887766 PP

>> TGFb_propeptide  TGF-beta propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.2e-05      0.12      79     166 ..      42     129 ..       3     152 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.2e-05
  TGFb_propeptide  79 eplasaqderaldeadtvmsfvnevekleveksrherhvkefkFnlseipegeavtaAeLRlykdevketfknqtlrisvYqvlkekq 166
                        + +++++++  +a  v s  ++  + +v    ++   ++ +F+   +p   +++aA LR+ ++  +++   q+ +++ Y + ++ +
       KIR63178.1  42 VRTSTPAESESAGSARRVSSAGKHPTRGDVRLTTEKTDERRARFERDAMPFVDQLYAAGLRMTRNPADAEDLVQETYLKAYAAFHQFE 129
                      456678889999999999999999444499999999999******************************************9986543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1896.57
//
Query:       KIR63179.1  [L=95]
Description: anti-sigma factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-06   28.2   8.7    1.6e-06   28.2   8.7    1.7  2  zf-HC2    Putative zinc-finger


Domain annotation for each model (and alignments):
>> zf-HC2  Putative zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   8.7     9e-11   1.6e-06       1      34 [.      11      44 ..      11      45 .. 0.98
   2 ?   -2.5   0.1      0.36   6.5e+03      19      22 ..      72      75 ..      64      78 .. 0.57

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 9e-11
                HCCHHHHHHHHHCCT-SCCCHCCCHHHHCHTCHH CS
      zf-HC2  1 CeevrelLsaYlDGeLspeerarveaHLaeCpdC 34
                C+ev++ +++YlD e+++e r  +++HL+eC +C
  KIR63179.1 11 CREVLAEVYLYLDLECAEERRTLIRRHLDECGPC 44
                ********************************** PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.36
                CCHC CS
      zf-HC2 19 eera 22
                +er 
  KIR63179.1 72 RERL 75
                3444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 761.81
//
Query:       KIR63180.1  [L=71]
Description: acetyl-CoA carboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-19   67.7   5.4    6.5e-19   67.5   5.4    1.0  1  Biotin_lipoyl    Biotin-requiring enzyme
    1.9e-08   34.0   6.1    5.4e-05   22.9   3.4    2.1  2  Biotin_lipoyl_2  Biotin-lipoyl like
    1.6e-05   24.2   0.7     0.0022   17.3   0.1    2.0  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    0.00018   22.2   3.1     0.0046   17.6   1.2    2.0  2  HlyD_3           HlyD family secretion protein
     0.0023   17.9   0.3        0.4   10.6   0.1    2.0  2  DUF2118          Uncharacterized protein conserved in archaea
     0.0027   18.1   0.3     0.0028   18.1   0.3    1.1  1  Glyco_trans_1_4  Glycosyl transferases group 1
       0.01   15.4   0.1       0.01   15.4   0.1    1.1  1  Glycos_transf_1  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.016   14.1   2.6       0.56    9.0   0.5    2.0  2  YqfD             Putative stage IV sporulation protein YqfD
      0.037   13.9   0.6       0.04   13.8   0.6    1.1  1  GCV_H            Glycine cleavage H-protein
      0.047   13.9   1.7        3.5    7.9   0.4    2.5  3  Peptidase_M23    Peptidase family M23
      0.065   12.9   0.6        8.4    6.1   0.2    2.2  2  PYNP_C           Pyrimidine nucleoside phosphorylase C-termin
      0.094   12.7   2.9          3    7.9   0.2    2.0  2  RnfC_N           RnfC Barrel sandwich hybrid domain


Domain annotation for each model (and alignments):
>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   5.4   4.4e-22   6.5e-19      13      73 .]      11      70 ..       3      70 .. 0.92

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 4.4e-22
                   EE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 13 eegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73
                   + +v++v  ++Gd+V++g++l+++e+mKme+++ a+++Gvv++++v+eGd v+ gdl+a+i
     KIR63180.1 11 A-NVWKVVASAGDTVSEGDTLVILESMKMEIPVVAESDGVVQQLVVNEGDVVQDGDLIAVI 70
                   3.3889*****************************************************97 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   4.9e-05     0.073      16      37 ..      16      37 ..       4      42 .. 0.81
   2 !   22.9   3.4   3.6e-08   5.4e-05       4      33 ..      41      70 ..      34      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.9e-05
  Biotin_lipoyl_2 16 lnVkdGqrVkaGdvLaelDsra 37
                     +    G+ V +Gd+L++l+s +
       KIR63180.1 16 VVASAGDTVSEGDTLVILESMK 37
                     55667*************9976 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 3.6e-08
  Biotin_lipoyl_2  4 sIaapvsGrVaqlnVkdGqrVkaGdvLael 33
                     ++ a  +G+V ql V +G++V+ Gd++a++
       KIR63180.1 41 PVVAESDGVVQQLVVNEGDVVQDGDLIAVI 70
                     556677**********************87 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0014       2.1      22      55 ..       5      37 ..       2      39 .. 0.80
   2 !   17.3   0.1   1.4e-06    0.0022     105     139 ..      36      70 ..      34      71 .] 0.90

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0014
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 22 vsarveGwveklyvnatgdkVkkGqpLaelyspe 55
                + a++ + v k+ ++  gd+V++G++L+ l+s +
  KIR63180.1  5 IRAEMVANVWKVVAS-AGDTVSEGDTLVILESMK 37
                556666777788777.9***********999976 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.4e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 105 vqktvtvkapisGvVteknvreGqyvqpgdtlfti 139
                 ++ +++v a+ +GvV+++ v+eG++vq gd ++ i
  KIR63180.1  36 MKMEIPVVAESDGVVQQLVVNEGDVVQDGDLIAVI 70 
                 67789************************988766 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.029        43       2      28 ..       5      31 ..       4      39 .. 0.88
   2 !   17.6   1.2   3.1e-06    0.0046       2      30 ..      42      70 ..      41      71 .] 0.95

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.029
      HlyD_3  2 lrApvdGvvvelnveegevvqagdell 28
                +rA     v+++ +++g+ v++gd+l+
  KIR63180.1  5 IRAEMVANVWKVVASAGDTVSEGDTLV 31
                78888899999999**********986 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 3.1e-06
      HlyD_3  2 lrApvdGvvvelnveegevvqagdellei 30
                + A  dGvv++l v+eg+vvq gd ++ i
  KIR63180.1 42 VVAESDGVVQQLVVNEGDVVQDGDLIAVI 70
                7899**********************998 PP

>> DUF2118  Uncharacterized protein conserved in archaea (DUF2118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   0.00027       0.4      94     130 ..      15      50 ..       3      51 .. 0.80
   2 !    8.0   0.1    0.0017       2.6      88     112 ..      46      70 ..      41      71 .] 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00027
     DUF2118  94 tlivdvGdrveegdtlaavttrkgevrylrapvegvV 130
                  +++  Gd v egdtl  + + k e+  + a  +gvV
  KIR63180.1  15 KVVASAGDTVSEGDTLVILESMKMEIPVV-AESDGVV 50 
                 467899*******************9876.5566666 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0017
     DUF2118  88 vegvkvtlivdvGdrveegdtlaav 112
                  +gv+ +l+v++Gd v++gd +a +
  KIR63180.1  46 SDGVVQQLVVNEGDVVQDGDLIAVI 70 
                 579999***************9976 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.3   1.9e-06    0.0028      73     119 ..      13      64 ..       2      70 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.9e-06
                      -SEEEE--.....---SHHHHHHHHTT-EEEE-TGGGTTT--.TTSSEE--TT CS
  Glyco_trans_1_4  73 advfvaPs.....egfglkllEamaaglpvVatdvggiaevv.gengllvppg 119
                      ++ +va       eg  l++lE+m +++pvVa + g ++++v + +g +v++g
       KIR63180.1  13 VWKVVASAgdtvsEGDTLVILESMKMEIPVVAESDGVVQQLVvN-EGDVVQDG 64 
                      44555555666668999****************98556777753.34455544 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   6.8e-06      0.01     102     134 ..      23      57 ..       5      68 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.8e-06
                      S..BSS-HHHHHHHHTT--EEEETTTTHCHHCHTT CS
  Glycos_transf_1 102 s..EgfGivllEAmaaglpviasnaggpaevvkdg 134
                      +  Eg  +v+lE+m+  +pv+a   g + ++v+++
       KIR63180.1  23 TvsEGDTLVILESMKMEIPVVAESDGVVQQLVVNE 57 
                      25588899*******************99999886 PP

>> YqfD  Putative stage IV sporulation protein YqfD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0036       5.3     204     220 ..      15      31 ..       7      39 .. 0.83
   2 ?    9.0   0.5   0.00037      0.56     187     211 ..      42      65 ..      33      68 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0036
        YqfD 204 eplvkegdtVkkGdvLI 220
                 + + + gdtV++Gd+L+
  KIR63180.1  15 KVVASAGDTVSEGDTLV 31 
                 678899**********9 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00037
        YqfD 187 ivAkkdGvItkvivesGeplvkegd 211
                 +vA+ dGv+++++v +G   v+ gd
  KIR63180.1  42 VVAESDGVVQQLVVNEGDV-VQDGD 65 
                 89********999888864.45555 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.6   2.7e-05      0.04      38      73 ..      17      52 ..       2      69 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
                ---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEE CS
       GCV_H 38 lpevgtkvkkgeslaavEsvKaasevyapvsGevve 73
                +  +g++v++g++l ++Es K+  +v a+ +G v +
  KIR63180.1 17 VASAGDTVSEGDTLVILESMKMEIPVVAESDGVVQQ 52
                5679****************************9976 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.041        62      50      69 ..      11      30 ..       3      39 .. 0.78
   2 ?    2.0   0.1      0.16   2.4e+02      13      25 ..      39      51 ..      31      56 .. 0.79
   3 ?    7.9   0.4    0.0024       3.5      53      73 ..      51      71 .]      48      71 .] 0.88

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.041
                   EEESEESS-TTEEE-TTCEE CS
  Peptidase_M23 50 ahlskisvkegqkVkaGqvI 69
                   a++ k+  ++g++V++G+++
     KIR63180.1 11 ANVWKVVASAGDTVSEGDTL 30
                   5666777889******9987 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.16
                   T-EEEESSSEEEE CS
  Peptidase_M23 13 gtpVlAaadGtVv 25
                   + pV+A +dG+V 
     KIR63180.1 39 EIPVVAESDGVVQ 51
                   569********96 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0024
                   SEESS-TTEEE-TTCEEEEEB CS
  Peptidase_M23 53 skisvkegqkVkaGqvIGtvg 73
                   +++ v+eg+ V+ G+ I+ +g
     KIR63180.1 51 QQLVVNEGDVVQDGDLIAVIG 71
                   6788*************9887 PP

>> PYNP_C  Pyrimidine nucleoside phosphorylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0087        13      38      53 ..      18      33 ..      15      46 .. 0.81
   2 ?    6.1   0.2    0.0056       8.4      36      53 ..      53      70 ..      43      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0087
                --TT-EEBTTSEEEEE CS
      PYNP_C 38 kklGdkVkkGeplati 53
                   Gd V++G++l+ +
  KIR63180.1 18 ASAGDTVSEGDTLVIL 33
                568**********977 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0056
                ES--TT-EEBTTSEEEEE CS
      PYNP_C 36 lhkklGdkVkkGeplati 53
                l +  Gd V+ G+ +a+i
  KIR63180.1 53 LVVNEGDVVQDGDLIAVI 70
                56778***********98 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2     0.002         3      43      79 ..      15      52 ..       7      53 .. 0.82
   2 ?    7.3   0.9    0.0029       4.4      39      59 ..      48      68 ..      43      71 .] 0.86

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.002
      RnfC_N 43 kplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVka 79
                k++ + gd+V +G+ +   e+  +  pv a + G V++
  KIR63180.1 15 KVVASAGDTVSEGDTLVILESmKMEIPVVAESDGVVQQ 52
                678899********887776645699******999976 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0029
      RnfC_N 39 GapakplvkvgdkVlkGqkia 59
                G   +++v++gd V+ G++ia
  KIR63180.1 48 GVVQQLVVNEGDVVQDGDLIA 68
                667899*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 510.46
//
Query:       KIR63181.1  [L=170]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-13   50.0   0.1    3.7e-13   49.7   0.1    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    9.1e-12   45.2   0.0    1.5e-11   44.6   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
      1e-07   31.9   0.0    1.6e-07   31.3   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    2.9e-07   30.4   0.0    5.5e-07   29.5   0.0    1.5  2  FR47             FR47-like protein
    2.1e-06   27.8   0.0    3.9e-06   26.9   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
    0.00065   19.8   0.0     0.0062   16.6   0.0    2.0  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.022   14.5   0.0      0.027   14.1   0.0    1.3  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
      0.023   14.9   1.8       0.17   12.0   1.5    2.1  1  Acetyltransf_6   Acetyltransferase (GNAT) domain
       0.17   11.6   0.9       0.28   10.9   0.1    1.7  2  DUF2934          Protein of unknown function (DUF2934)


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.1   1.8e-16   3.7e-13      34     117 .]      52     143 ..      17     143 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 1.8e-16
                     EEEEEEET..TEEEEEEEEEEEET.....TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETT.EHHHHHHHHHTTE CS
  Acetyltransf_1  34 gllvaeed..geliGfisllkipd.....ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveed.ndaairlYeklGF 117
                     + lva ++  g ++G +++            +g+a+ + laV+p+++g+G+G aL+ea++ ra  +g+ ++v+ v+    +aa+rlYe+lGF
      KIR63181.1  52 EVLVAVDGatGGVLGSVTFVLPGTpyaelSGPGEAEFRMLAVDPAAQGRGVGAALVEACLSRAAARGCSAVVICVRGGlAEAAHRLYERLGF 143
                     5555555534448888877777778888988899**********************************999998999999***********9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   7.4e-15   1.5e-11       2      76 .]      50     145 ..      49     145 .. 0.71

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 7.4e-15
                     TEEEEEEEET..TEEEEEEEEEEES...........TCTEEEEE-GGGTTSSHHHHHHHH....TT.SEEE...EE.EEEETHHHHHHHHHHTTE CS
  Acetyltransf_7   2 kgevfVaedd..gkivGfialslld...........aeitrlaVdpeyrgkGiGraLlea....ae.kgii...le.qlelnaekaikfYeklGF 74 
                     +gev+Va d+  g+++G + ++l +           ae   laVdp+++g+G+G aL+ea    a+ +g+    ++ +  l++ +a+++Ye+lGF
      KIR63181.1  50 SGEVLVAVDGatGGVLGSVTFVLPGtpyaelsgpgeAEFRMLAVDPAAQGRGVGAALVEAclsrAAaRGCSavvICvRGGLAE-AAHRLYERLGF 143
                     67899998888888888777666668887777786555555******************867652267875333222222332.7899******* PP

                     EE CS
  Acetyltransf_7  75 ee 76 
                     ++
      KIR63181.1 144 VR 145
                     85 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   8.2e-11   1.6e-07      53     109 ..      87     146 ..      77     152 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 8.2e-11
  Acetyltransf_10  53 hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp..yavpfYeklGFkav 109
                      +  +l+Vdp+++g+G+g+aL+ea++++a  +g +   + v+     +a ++Ye+lGF+++
       KIR63181.1  87 EFRMLAVDPAAQGRGVGAALVEACLSRAAARGCSAvVICVRGGLaeAAHRLYERLGFVRT 146
                      5679***********************99999998777777644449***********98 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       5.4   1.1e+04      37      44 ..      36      43 ..      34      52 .. 0.71
   2 !   29.5   0.0   2.8e-10   5.5e-07      20      85 ..      84     151 ..      65     152 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5.4
                SHHHHHHH CS
        FR47 37 Glgsrlvk 44
                G+g +l+ 
  KIR63181.1 36 GYGVVLAD 43
                88888875 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 2.8e-10
                 TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT..-HHHHHHHHHHT-EEEEEEEE CS
        FR47  20 dggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvas..NtpsirlyeklGfekieetew 85 
                    e  +l v+p +++rG g  lv+a   + a+rg  ++++ v +   +++ rlye+lGf    e+ w
  KIR63181.1  84 GEAEFRMLAVDPAAQGRGVGAALVEACLSRAAARGCSAVVICVRGglAEAAHRLYERLGFVRTPERDW 151
                 4578899****************************999999888733589**********98877777 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.9e-09   3.9e-06      20      64 ..      81     125 ..      55     126 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.9e-09
  Acetyltransf_CG  20 rkegvldfthTeVpeelrGkGiAkkLvkaalddareeglkvvptC 64 
                      ++ g+ +f    V+++ +G+G++++Lv+a+l  a ++g + v++C
       KIR63181.1  81 SGPGEAEFRMLAVDPAAQGRGVGAALVEACLSRAAARGCSAVVIC 125
                      455688999999********************************9 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.1e-06    0.0062       1     125 [.       5     143 ..       5     145 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.1e-06
                     .EEEE-GGGHHHHHHHHHHHTT----H.......HHHHHHHHHHTTSEEEEEEE...TTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTT CS
  Acetyltransf_9   1 eirelteedldevlellkyaFqdeespl....e.eireyfrklleesrvlgaed...ngelvgqlallplelnvpGktlkaagvtgVavapehrg 87 
                     ++r++t++d+ +v++l  +a++ + +      +  + + +  + e+++vl+a d   +g l ++  +lp + +   +    a   + av+p  +g
      KIR63181.1   5 RVRRATPADFSAVARLTVAAYEADGQLKgehgYgVVLADVATRAESGEVLVAVDgatGGVLGSVTFVLPGTPYAELSGPGEAEFRMLAVDPAAQG 99 
                     5899*****************999998888886667788899999999**99997744445555555554333322222224455689******* PP

                     S-HHHHHHHHHHHHHHHTT--EEEE--......SSHHHHHTTT- CS
  Acetyltransf_9  88 rgvlskLlaraleemreegqplsllfP......ssipiYrrfGy 125
                     rgv  +L+++ l +++++g + +++        ++ ++Y+r+G+
      KIR63181.1 100 RGVGAALVEACLSRAAARGCSAVVICVrgglaeAAHRLYERLGF 143
                     *******************9999998878887888899999998 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.4e-05     0.027      77     144 ..      83     150 ..      39     151 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
                     TT-EEEEEEESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT.-HHHHHHHHHTT-EEEEEEE CS
  Acetyltransf_8  77 pgdrGiHlligeaeargkglttallralvhylfadprtrrvvvEPdvr.NerairllekaGfekekevd 144
                     pg   + +l  +++a g+g+++al++a+++++ a+ +++ vv+  +    e+a+rl+e++Gf++  e d
      KIR63181.1  83 PGEAEFRMLAVDPAAQGRGVGAALVEACLSRAAAR-GCSAVVICVRGGlAEAAHRLYERLGFVRTPERD 150
                     566667777789999*****************999.88888888876536899**********998865 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.5   8.6e-05      0.17      19     131 ..       3     122 ..       1     131 [. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.6e-05
  Acetyltransf_6  19 evrfrvatdpedleallelfraqwarrpdvfadpltraflrdllaalaargalrlyvlrld..grpvAvalglrsgdrly.........ywlggy 102
                     ++r+r+a +p+d++a+ +l +a +++   ++ ++ +   l+d++ +    ++++++v+  +  g +++++  +  g+ +          + + ++
      KIR63181.1   3 GLRVRRA-TPADFSAVARLTVAAYEADGQLKGEHGYGVVLADVATRA---ESGEVLVAVDGatGGVLGSVTFVLPGTPYAelsgpgeaeFRMLAV 93 
                     6778776.699999999999999999977777778888888887775...445555555543477777664444443222333333333788899 PP

  Acetyltransf_6 103 dpelaklspgllllweliedaaeeGlrrf 131
                     dp++ + ++g  l+  ++ +aa++G++ +
      KIR63181.1  94 DPAAQGRGVGAALVEACLSRAAARGCSAV 122
                     999**********************9865 PP

>> DUF2934  Protein of unknown function (DUF2934)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       5.1     1e+04       9      12 ..      23      26 ..      22      31 .. 0.76
   2 ?   10.9   0.1   0.00014      0.28       7      28 ..     131     151 ..     130     152 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.1
     DUF2934  9 rAYe 12
                +AYe
  KIR63181.1 23 AAYE 26
                7886 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00014
     DUF2934   7 rerAYelWErrGrpeGrdeedW 28 
                 +e+A++l+Er G+    +e+dW
  KIR63181.1 131 AEAAHRLYERLGFV-RTPERDW 151
                 79************.88***** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1225.10
//
Query:       KIR63182.1  [L=187]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-18   65.1   0.3    3.6e-18   65.1   0.3    2.3  3  TetR_N       Bacterial regulatory proteins, tetR family
     0.0015   18.6   0.2     0.0028   17.8   0.2    1.7  1  HTH_Tnp_1_2  Helix-turn-helix of insertion element transposas
     0.0018   18.5   0.4     0.0042   17.3   0.1    1.7  2  UPF0122      Putative helix-turn-helix protein, YlxM / p13 li
     0.0043   17.1   0.2      0.055   13.5   0.0    2.4  2  HTH_20       Helix-turn-helix domain
  ------ inclusion threshold ------
      0.016   15.0   1.3      0.036   13.9   0.1    2.2  2  HTH_23       Homeodomain-like domain
       0.02   14.7   0.3      0.052   13.3   0.0    1.8  2  HTH_10       HTH DNA binding domain
      0.043   13.6   0.1        1.2    8.9   0.0    2.6  2  HTH_38       Helix-turn-helix domain
      0.065   13.1   0.5        1.1    9.1   0.0    2.5  2  HTH_IclR     IclR helix-turn-helix domain
      0.073   13.0   0.0       0.13   12.2   0.0    1.4  1  HTH_11       HTH domain
      0.092   12.3   0.0        0.2   11.3   0.0    1.5  1  HTH_24       Winged helix-turn-helix DNA-binding
      0.099   13.3  10.5      0.023   15.3   7.5    1.5  2  ABATE        Putative stress-induced transcription regulator
       0.13   12.2   0.0       0.27   11.1   0.0    1.5  1  HTH_5        Bacterial regulatory protein, arsR family
       0.51   11.0   3.4        6.4    7.4   0.3    2.4  2  Hemerythrin  Hemerythrin HHE cation binding domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.3   2.6e-21   3.6e-18       3      44 ..      13      54 ..      11      57 .. 0.95
   2 ?   -1.2   0.1       1.3   1.8e+03       2      10 ..     143     151 ..     143     153 .. 0.85
   3 ?   -3.5   0.1       6.9   9.5e+03       2      10 ..     174     182 ..     174     183 .. 0.77

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 2.6e-21
                HHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHH CS
      TetR_N  3 daArelfaerGydattvreIAkrAGvskgalYryFpsKeeLl 44
                ++A+elf e+Gy++t++reIA+r++v+k+alY++F+sK+e++
  KIR63182.1 13 AVALELFTEQGYEKTSLREIAERLNVTKAALYYHFKSKDEIV 54
                68**************************************98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.3
                 HHHHHHHHH CS
      TetR_N   2 ldaArelfa 10 
                 l aA+ lfa
  KIR63182.1 143 LRAALSLFA 151
                 78******8 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 6.9
                 HHHHHHHHH CS
      TetR_N   2 ldaArelfa 10 
                 ld+A el+a
  KIR63182.1 174 LDVADELLA 182
                 788888887 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2     2e-06    0.0028      15      53 ..      15      54 ..       3     124 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2e-06
                 HHHHHHHHHH--S-HHHHHHHHTS-HHHHH.HHHH-HHHH CS
  HTH_Tnp_1_2 15 aaellvendyekltldeiaeevgvsrsTly.kWkkkkeFi 53
                 a el  e+ yek++l+eiae + v ++ ly + k+k e +
   KIR63182.1 15 ALELFTEQGYEKTSLREIAERLNVTKAALYyHFKSKDEIV 54
                 56888*********************99761566665554 PP

>> UPF0122  Putative helix-turn-helix protein, YlxM / p13 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   3.1e-06    0.0042      32      65 ..      25      59 ..      12      68 .. 0.82
   2 ?   -2.1   0.0       3.4   4.7e+03      16      40 ..      92     116 ..      81     126 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.1e-06
     UPF0122 32 dDlSlsEiAeefnvsrqavydnikrteklleky.E 65
                +  Sl EiAe+ nv++ a+y + k  ++++ ++ E
  KIR63182.1 25 EKTSLREIAERLNVTKAALYYHFKSKDEIVSSFvE 59
                456**********************9999998834 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.4
     UPF0122  16 sLLTekqanylelyyadDlSlsEiA 40 
                 s+  + q ++++ + ++  +l+ +A
  KIR63182.1  92 SMFATEQPSVMRFFEQNQTALKSLA 116
                 4556667777777766666666555 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     4e-05     0.055      23      46 ..      25      48 ..      15      49 .. 0.89
   2 ?    0.7   0.1      0.42   5.7e+02      16      35 ..     129     148 ..     118     155 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4e-05
                TTB-HHHHHHHHTS-HHHHHHHHH CS
      HTH_20 23 egltaselaerldlskntlsyHLr 46
                e  ++ e+aerl ++k+ l+yH++
  KIR63182.1 25 EKTSLREIAERLNVTKAALYYHFK 48
                567999****************97 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.42
                 HHHHSTCTTB-HHHHHHHHT CS
      HTH_20  16 lraLaraegltaselaerld 35 
                  +aLar+++  a++l ++l+
  KIR63182.1 129 ADALARGDESPAAQLRAALS 148
                 57889999999999999886 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.6e-05     0.036       3      35 ..       8      44 ..       7      50 .. 0.88
   2 ?   -1.9   0.2       2.3   3.1e+03       3      19 ..     165     180 ..     163     186 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.6e-05
      HTH_23  3 sereRlrillllae....GlsvreIAreLgvsrrTvy 35
                +er+++ +l l+ e    + s reIA++L+v++  +y
  KIR63182.1  8 RERIKAVALELFTEqgyeKTSLREIAERLNVTKAALY 44
                789999999999988888**************99888 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.3
      HTH_23   3 sereRlrillllaeGls 19 
                 + +eR +i+l +a+   
  KIR63182.1 165 TDEERRKIALDVAD-EL 180
                 56788888888775.34 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.8e-05     0.052      24      45 ..      27      48 ..      22      53 .. 0.91
   2 ?   -2.8   0.1       4.1   5.6e+03      19      33 ..     166     180 ..     166     180 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.8e-05
      HTH_10 24 vtlkeLAkelGIskstlsehLr 45
                ++l+e+A++l+++k++l++h +
  KIR63182.1 27 TSLREIAERLNVTKAALYYHFK 48
                799*****************76 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.1
      HTH_10  19 dyPRrvtlkeLAkel 33 
                 d+ Rr  + ++A+el
  KIR63182.1 166 DEERRKIALDVADEL 180
                 677888888999886 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0009       1.2      19      35 ..      25      41 ..      23      48 .. 0.84
   2 ?    1.7   0.0      0.16   2.1e+02       4      14 ..     163     173 ..     160     185 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0009
      HTH_38 19 eGlslreIArrLgrsps 35
                e+ slreIA rL++ + 
  KIR63182.1 25 EKTSLREIAERLNVTKA 41
                678**********9875 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.16
      HTH_38   4 hLsleeReeIe 14 
                 + + eeR++I+
  KIR63182.1 163 RVTDEERRKIA 173
                 7799*****98 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00081       1.1       9      36 ..      16      44 ..      13      47 .. 0.86
   2 ?    1.1   0.3      0.25   3.5e+02       3      24 ..     123     143 ..     123     150 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00081
                HCT-CTTBSS.-BHHHHHHHHTS-HHHHH CS
    HTH_IclR  9 Ldalaeapqe.ltlselArrtglpkStvh 36
                L++++e++ e  +l+e+A+r+ ++k++ +
  KIR63182.1 16 LELFTEQGYEkTSLREIAERLNVTKAALY 44
                889999998856*************9865 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.25
                 HHHHHHHCT-CTTBSS-BHHHH CS
    HTH_IclR   3 dRalaiLdalaeapqeltlsel 24 
                 dR +++ dala++++    ++l
  KIR63182.1 123 DRMFRLADALARGDES-PAAQL 143
                 7999999******997.55555 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.7e-05      0.13       6      35 ..      16      46 ..      12      49 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.7e-05
      HTH_11  6 lelLleargp.isgeeLAeeLnvSrrtvrrd 35
                lel+ e+     s  e+Ae+Lnv++++ + +
  KIR63182.1 16 LELFTEQGYEkTSLREIAERLNVTKAALYYH 46
                5666666666799*************99865 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00014       0.2      18      39 ..      27      48 ..      20      50 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
      HTH_24 18 isqreLAerlglSpstvnrrlk 39
                +s re+Aerl+++++++ ++ k
  KIR63182.1 27 TSLREIAERLNVTKAALYYHFK 48
                799*************999976 PP

>> ABATE  Putative stress-induced transcription regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.6   9.1e+03      58      85 ..       8      35 ..       6      43 .. 0.56
   2 ?   15.3   7.5   1.7e-05     0.023      19     123 ..      59     177 ..      52     187 .] 0.73

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.6
                HHHHHHHHTHHHH.........HHHHHH CS
       ABATE 58 Realrallaaaaagdpppaaalaalnal 85
                Re++ a++ +  ++++ +  +l+++ + 
  KIR63182.1  8 RERIKAVALELFTEQGYEKTSLREIAER 35
                6777776665555555555555444444 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.7e-05
                 HHHTTT-HHHHHH--TTHHHHHH......................................HHHHHHHHHHHHHHTHHHH.........HHHHHHHHHS CS
       ABATE  19 aDlLttpadLaaWleaagllpagtaaagada............................elararaLRealrallaaaaagdpppaaalaalnallaaa 89 
                 +D+L+  ++L aW+++    ++ t a++++                              la+  + R+++ +l++a a+gd+ paa+l+a   l a +
  KIR63182.1  59 EDRLDRMDALIAWADE----QPSTLATRRELiaryadsmfateqpsvmrffeqnqtalkSLAAGQQMRDRMFRLADALARGDESPAAQLRAALSLFAVH 153
                 79**************....444444444348899************************99********************999999997777775554 PP

                 ----EEEE-TTS-E..........EEESTT--HH CS
       ABATE  90 ppaprLvrhddgpvdrardwhllallatlAadaa 123
                 +    +++    + +++r+         +A d+a
  KIR63182.1 154 SSWFAIRAPR-VTDEERRK---------IALDVA 177
                 4444444433.22222222.........233322 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0002      0.27      15      37 ..      26      48 ..      16      49 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
                SEEHHHHHHHHTS-HHHHHHHHH CS
       HTH_5 15 elcvcelaeelglsqstvShHLk 37
                +++  e+ae l+++++++ +H+k
  KIR63182.1 26 KTSLREIAERLNVTKAALYYHFK 48
                56789****************98 PP

>> Hemerythrin  Hemerythrin HHE cation binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.3    0.0046       6.4      21      79 ..      17      68 ..       5     116 .. 0.71
   2 ?    4.0   1.5     0.052        72      81     112 ..     119     150 ..      60     170 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0046
                 HHHHHHHHHHCCC...HCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH.CCC.HHHHHHHHHH CS
  Hemerythrin 21 raladaaaevhga...lrklaelldelvdeleaHhaaEEellfPlledrpggravldvlere 79
                 + ++++     ++   lr++ae l+  +++l  H++ ++e++   +e      ++ld++ + 
   KIR63182.1 17 ELFTEQ----GYEktsLREIAERLNVTKAALYYHFKSKDEIVSSFVE------DRLDRMDAL 68
                 333444....333455*************************877777......555555444 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.052
                  HHHHHHHHHHHHHCHTCGGSTCHHHHHHHHHH CS
  Hemerythrin  81 deirelleelrellkgleepsaaafaelleel 112
                  +++r+++ +l+ +l++ +e++aa+++ +l  +
   KIR63182.1 119 QQMRDRMFRLADALARGDESPAAQLRAALSLF 150
                  67888888888666666657777777655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1361.86
//
Query:       KIR63183.1  [L=529]
Description: transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-55  187.9  52.0    2.3e-55  187.9  52.0    2.5  2  MFS_1     Major Facilitator Superfamily
    3.9e-19   68.5  21.4    5.9e-19   67.9  21.4    1.2  1  TRI12     Fungal trichothecene efflux pump (TRI12)
    8.7e-10   38.0  15.4    8.7e-10   38.0  15.4    2.6  2  Sugar_tr  Sugar (and other) transporter
    0.00026   19.7  39.0     0.0063   15.1  11.3    3.6  4  MFS_2     MFS/sugar transport protein
  ------ inclusion threshold ------
       0.18   11.2   4.9       0.96    8.7   1.0    2.6  2  DUF4407   Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.9  52.0   6.5e-59   2.3e-55       1     352 [.      21     422 ..      21     423 .. 0.89
   2 ?    0.1   0.2     0.085     3e+02     152     173 ..     479     498 ..     468     525 .. 0.50

  Alignments for each domain:
  == domain 1  score: 187.9 bits;  conditional E-value: 6.5e-59
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.........sslwlllv 90 
                 l++a +l++l+ +i+++alp  +  ++g  ++ + +++t+y lg+ v+++++G l+d +Gr+ v+l+++ +f++g++l+ +a         s++  l++
  KIR63183.1  21 LMIAMMLAMLDNMIVSTALP-RIVGEFG-GVDHFTWVVTAYVLGTTVSTPIWGKLGDLYGRKAVFLTSVGIFLVGSALCGMAgsgvfggadSGMIELIA 117
                 6899****************.9******.**********************************************555555443344454544555*** PP

       MFS_1  91 lrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee. 188
                 +r++qGlgag+l+ +++a+i d++p++ergr+ g++++ ++++++ gpl+gg+++++l+Wr++fy++ +++ +a++   +l ++ + ++ r +++ ++ 
  KIR63183.1 118 FRAVQGLGAGGLMVGVMAIIGDLVPPRERGRYQGMMAGIMAIAMVAGPLVGGFITDNLSWRWAFYVNLPLGGVALL---VLATTMHLPKYRTEHRIDWl 213
                 **************************************************************************88...78888888888888888888 PP

       MFS_1 189 ...............................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgl 240
                                                                ++++  p++p ++++ ++++ +i +i++ll+f +++g++ +lply q+v g 
  KIR63183.1 214 gagllsvgitaivlittwggssydwaspqilglsalalvslvvfgfvERRAAEPILP-LGLFANRNFALISMIGFLLGF-AMFGAMNFLPLYQQTVQGA 310
                 8899******************************************99999999999.999999997776777777775.******************* PP

       MFS_1 241 sglllaglllallalvgailallagrlsdrlgrrrrlll.allllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtas 338
                 s +  +glll  l++++++++l++gr ++++gr r+  + +++++++++++l  l v + ++ + l ++++G+g+gf + +++ +a++++ ++  g+as
  KIR63183.1 311 S-ATNSGLLLLPLMFGMLVVSLVVGRAITKTGRYRMFPIvGGVVMTVGLALLTRLDVGTGKAESSLYMIVLGVGMGFLMQTSMLIAQNSVEQKDLGAAS 408
                 *.788888888888888888************95554440444455555555556666999999999999***************************** PP

       MFS_1 339 glfntagslggalg 352
                 g++++++s+gg++g
  KIR63183.1 409 GAATFFRSIGGSFG 422
                 ***********998 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.085
       MFS_1 152 avfyilaivsllafvlfllllp 173
                  vf+ + ++++l+ vl  +++ 
  KIR63183.1 479 HVFWWAVLFTVLVPVL--AWFI 498
                 3455555555555444..3332 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9  21.4   1.6e-22   5.9e-19      42     470 ..      14     435 ..       3     460 .. 0.81

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 1.6e-22
       TRI12  42 vvasfaafslnvvatyfvlqasasalpnilqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvga.........ivgctatkf 131
                 +   + ++ + ++ + +     ++alp i+ + g  +  + + t + +g +vs  + g+l d +gr+ + + +  + lvg+         + g + + +
  KIR63183.1  14 IRVVLFGLMIAMMLAMLDNMIVSTALPRIVGEFGGVDHFTWVVTAYVLGTTVSTPIWGKLGDLYGRKAVFLTSVGIFLVGSalcgmagsgVFGGADSGM 112
                 555555555555555555556789******************************************987766666666664111111111234444556 PP

       TRI12 132 ntllaamtllgvaagpaga.splfvgelms..nktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhg 227
                   l+a  ++ g+ ag        ++g+l+   ++ ++ g++   i ++++  ++p +g  ++ + swrw fy+ + +  +a+l++    + p ++  h 
  KIR63183.1 113 IELIAFRAVQGLGAGGLMVgVMAIIGDLVPprERGRYQGMM-AGIMAIAMV-AGPLVGGFITDNLSWRWAFYVNLPLGGVALLVLATTMHLPKYRTEH- 208
                 67888888889988876541455799**9622567899976.578888998.9********************************9999999998766. PP

       TRI12 228 kkvrkreelakldwigiilvivgvslfllgvswggkpnspwnsakviglissglgslvvfalyevygkpvrpivppalfkdtrgfvcillissimgamn 326
                           ++dw+g  l++vg++ ++l  +wgg     w s +++gl +  l slvvf + e   +  +pi+p  lf + r f  i +i  ++g   
  KIR63183.1 209 ----------RIDWLGAGLLSVGITAIVLITTWGGSS-YDWASPQILGLSALALVSLVVFGFVE--RRAAEPILPLGLFAN-RNFALISMIGFLLGFAM 293
                 ..........79***********************86.57*********************988..58899********75.99********9999766 PP

       TRI12 327 lslviiypqqvvnifgsslknweetawmsatasfgtgagvvvlgslfhlvrhirwqilvgalwltaflgamssvnrdnknaaials.vlsgfvvawaqd 424
                 +  + + p     + g+s  n   +  +     fg     +v+g  +      r   +vg + +t  l  ++ ++    +a  +l  ++ g+ +++  +
  KIR63183.1 294 FGAMNFLPLYQQTVQGASATN---SGLLLLPLMFGMLVVSLVVGRAITKTGRYRMFPIVGGVVMTVGLALLTRLDVGTGKAESSLYmIVLGVGMGFLMQ 389
                 666666666666678999887...567778899************9999999999999*************99998877766666515679999***** PP

       TRI12 425 itmllvqfittdedlgvafavvaaarpfagsiftaafislysnryp 470
                  +ml+ q    ++dlg a    +  r + gs   + f ++++nr  
  KIR63183.1 390 TSMLIAQNSVEQKDLGAASGAATFFRSIGGSFGISLFGAIFANRLA 435
                 ******************9999999999999888889899988865 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0  15.4   2.4e-13   8.7e-10      48     188 ..      52     195 ..      22     208 .. 0.92
   2 !    4.5  10.4    0.0037        13      32     151 ..     300     419 ..     272     439 .. 0.69

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 2.4e-13
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT......SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk......nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalv 140
                  +++v ++++G +++  + g+lgd +GRk ++l+++ +f++g++l+++a ++      + +  li+ R + G+g+G+  v v   i+ + p++ Rg+  
  KIR63183.1  52 FTWVVTAYVLGTTVSTPIWGKLGDLYGRKAVFLTSVGIFLVGSALCGMAGSGvfggadSGMIELIAFRAVQGLGAGGLMVGVMAIIGDLVPPRERGRYQ 150
                 589***********************************************99*****999*************************************99 PP

                 HHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG CS
    Sugar_tr 141 slyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill 188
                 ++    +++ ++ +  +g ++ ++ +   wr+ ++++l +  + l++l
  KIR63183.1 151 GMMAGIMAIAMVAGPLVGGFITDNLS---WRWAFYVNLPLGGVALLVL 195
                 99999999999999999888888888...9999999999876666554 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0037
                 STT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHH.HHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHT CS
    Sugar_tr  32 fglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslli.aavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisE 129
                   l++++  + +s++ sgl++  +++G ++ sl++g ++++ GR   + i ++v++ +g +l    + ++      +  +++G+g+G+   ++ m+i+ 
  KIR63183.1 300 LPLYQQTV-QGASATNSGLLLLPLMFGMLVVSLVVGRAITKTGRYRMFPIvGGVVMTVGLALLTRLDVGTGKAESSLYMIVLGVGMGFLMQTS-MLIAQ 396
                 22333333.33378899***************************88886649999****999999998888888888889*******987765.66666 PP

                 TS-SCCH.HHHHHHHHHHHHHHH CS
    Sugar_tr 130 iApkklR.galvslyqlaitfGi 151
                 ++ +++  ga  +   ++ ++G 
  KIR63183.1 397 NSVEQKDlGAASGAATFFRSIGG 419
                 65333322554444444444444 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1  11.3   1.8e-06    0.0063     259     360 ..      50     155 ..       3     175 .. 0.78
   2 ?    0.2   1.0     0.058   2.1e+02     139     193 ..     148     197 ..     145     236 .. 0.64
   3 !   14.1  12.7   3.6e-06     0.013     220     380 ..     273     429 ..     271     437 .. 0.76
   4 ?   -1.4   0.1      0.18   6.5e+02      74     101 ..     471     498 ..     467     516 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.8e-06
       MFS_2 259 saasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlll.......qpsnlllflvllviagfgvgvaallpwsmladvvDygelkt 350
                 + ++++ ++ ++++++++p+w +l   +g+k+++l +  + +v+++l+ ++         s ++ ++++ ++ g+g+g++++ ++++++d+v   e   
  KIR63183.1  50 DHFTWVVTAYVLGTTVSTPIWGKLGDLYGRKAVFLTSVGIFLVGSALCGMAgsgvfggADSGMIELIAFRAVQGLGAGGLMVGVMAIIGDLVPPRE--- 145
                 6899*****************************************************99999999*************************996555... PP

       MFS_2 351 Gkrregvffa 360
                   r +g++++
  KIR63183.1 146 RGRYQGMMAG 155
                 4444455444 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.058
       MFS_2 139 rsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgt 193
                 r++ +++g +++a++a++lv+ + +     ++ ++  ++++ L l+gv ++vl+t
  KIR63183.1 148 RYQGMMAGIMAIAMVAGPLVGGFIT-----DNLSWRWAFYVNLPLGGVALLVLAT 197
                 6677788888888888888877776.....4444444444555555444444444 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 3.6e-06
       MFS_2 220 vfrnraflillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkknty.llgalltivllvlvlllqpsnlll 316
                 +f nr f ++ ++++l  +a++   + l +y + v g ++++  ++ll ++ ++l++++++ ++ ++ g+++++ ++g +++ v+l+l+  l    +  
  KIR63183.1 273 LFANRNFALISMIGFLLGFAMFGAMNFLPLYQQTVQGaSATNSGLLLLPLMFGMLVVSLVVGRAITKTGRYRMFpIVGGVVMTVGLALLTRL-DVGTGK 370
                 688999999988888888889999999999*******8888888888888*********************999678888888898888888.444444 PP

       MFS_2 317 flvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgll 380
                 +   l ++ +gvg+ +l+ +sml     + +     ++ g + ++ +f+  +++ +g++++g++
  KIR63183.1 371 AESSLYMIVLGVGMGFLMQTSMLIAQNSVEQ-----KDLGAASGAATFFRSIGGSFGISLFGAI 429
                 4444444445555666666666655444444.....5677788888888888888888877766 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.18
       MFS_2  74 saiilavsiillftppelsqsakfiwll 101
                 ++++ avs ++ ++++++  ++ ++w++
  KIR63183.1 471 GGLADAVSHVFWWAVLFTVLVPVLAWFI 498
                 4444555555555555544445555543 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.0   0.00027      0.96      45      99 ..      15      69 ..       8      72 .. 0.90
   2 ?    3.3   0.2     0.012        44       6      50 ..     141     188 ..     137     197 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00027
     DUF4407 45 lallvGllwgllIfnlDRfivssikkrakkrrelalalpRlllAvligvvisepl 99
                 ++l+Gl+ +++   lD +ivs+  +r  +    +     ++ A ++g+++s+p+
  KIR63183.1 15 RVVLFGLMIAMMLAMLDNMIVSTALPRIVGEFGGVDHFTWVVTAYVLGTTVSTPI 69
                579*********************9999999999999999999999999999997 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.012
     DUF4407   6 cp.serkkyagiGavvlltallAalsgayAlytvlkspll..lallvG 50 
                 +p +er +y g+ a ++++a++A+  ++ ++   l++++   + l+ G
  KIR63183.1 141 VPpRERGRYQGMMAGIMAIAMVAGPLVGGFITDNLSWRWAfyVNLPLG 188
                 5669********************999999999999999855444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 3457.92
//
Query:       KIR63184.1  [L=609]
Description: hypothetical protein TK50_20120 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-10   38.1   4.3     0.0018   18.2   0.0    5.2  5  TPR_2         Tetratricopeptide repeat
    2.7e-09   37.4  15.1    3.6e-07   30.6   0.5    4.9  5  TPR_19        Tetratricopeptide repeat
    8.1e-09   35.6  40.9     0.0013   19.4   1.2    7.8  6  TPR_14        Tetratricopeptide repeat
    7.9e-08   31.8   0.0     0.0058   16.4   0.0    3.0  2  TPR_1         Tetratricopeptide repeat
    3.2e-06   27.7   7.3    3.2e-06   27.7   7.3    6.7  5  TPR_16        Tetratricopeptide repeat
    2.5e-05   23.8   1.0     0.0028   17.3   0.1    3.3  4  TPR_11        TPR repeat
    0.00017   21.5   0.1          1    9.8   0.0    3.4  3  TPR_8         Tetratricopeptide repeat
    0.00026   21.1   0.1        1.4    9.5   0.0    4.5  3  TPR_17        Tetratricopeptide repeat
     0.0015   19.1   0.0      0.017   15.7   0.0    2.9  2  TPR_6         Tetratricopeptide repeat
     0.0042   17.3   2.6     0.0042   17.3   2.6    4.6  4  TPR_12        Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   16.0   1.2        0.4   10.9   0.0    3.2  3  TPR_5         Tetratrico peptide repeat
      0.067   13.1  15.2       0.28   11.1   0.3    4.6  4  TPR_10        Tetratricopeptide repeat
       0.11   12.7   0.0       0.58   10.4   0.0    2.2  2  ANAPC3        Anaphase-promoting complex, cyclosome, subunit 
       0.11   12.5   0.6       0.48   10.5   0.1    2.1  2  DUF3856       Domain of Unknown Function (DUF3856)
       0.14   12.3   7.5        1.1    9.5   0.2    4.2  4  TPR_7         Tetratricopeptide repeat
       0.23   11.5   0.9       0.53   10.3   0.9    1.6  1  Sigma70_r1_2  Sigma-70 factor, region 1.2
       0.38    9.9   6.9       0.09   12.0   0.4    2.8  3  TPR_15        Tetratricopeptide repeat
        1.7    9.0   9.9        0.5   10.7   0.3    3.9  4  TPR_20        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1       0.6     6e+02       6      32 ..      17      43 ..      12      45 .. 0.81
   2 ?    0.8   0.1      0.71     7e+02       6      27 ..      79     100 ..      78     106 .. 0.87
   3 !   18.2   0.0   1.8e-06    0.0018       6      34 .]     208     236 ..     207     236 .. 0.96
   4 !   14.3   0.0   3.4e-05     0.034       5      33 ..     241     269 ..     238     270 .. 0.87
   5 ?   -1.9   0.0         5   4.9e+03       2      15 ..     478     491 ..     477     493 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.6
       TPR_2  6 nlGlayyklgdyeeAleafekAleldP 32
                +l+++++  gd++ A+ +   Al   P
  KIR63184.1 17 ALARLALDEGDLAHAAGHVAGALTRSP 43
                699999999**9999988777777766 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.71
       TPR_2   6 nlGlayyklgdyeeAleafekA 27 
                 +++ +++++g+++e le++ +A
  KIR63184.1  79 ARAHLLAAAGRPAEGLELLAAA 100
                 58999*********99998877 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 1.8e-06
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPnn 34 
                 +lG+ay+ +g+  eAl+a+ +A+ +dP++
  KIR63184.1 208 WLGYAYRSAGRTREALAALGRAVDHDPDD 236
                 79*************************97 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 3.4e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                   ++  ++  g+++eAle+ ++Al+ +P 
  KIR63184.1 241 ADIAGTLADTGRLDEALEWTDRALARNPA 269
                 566778999******************95 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 5
       TPR_2   2 ealynlGlayyklg 15 
                 +++ +lGl++ + +
  KIR63184.1 478 QVWACLGLLHHRTD 491
                 5899*****99876 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1     0.001         1       1      35 [.      22      56 ..      22      60 .. 0.92
   2 ?    4.3   0.0     0.059        59      31      62 ..      80     110 ..      72     112 .. 0.85
   3 !   30.6   0.5   3.6e-10   3.6e-07       4      57 ..     216     269 ..     213     278 .. 0.93
   4 ?   -1.7   0.0       4.4   4.4e+03      19      35 ..     299     315 ..     284     317 .. 0.80
   5 ?   -1.9   0.3       4.9   4.9e+03       9      25 ..     330     346 ..     328     352 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
      TPR_19  1 llaegdyaeAlalleqalqedpknaearllLAeal 35
                +l+egd+a A+ + + al+ +p  +ea   LA++ 
  KIR63184.1 22 ALDEGDLAHAAGHVAGALTRSPTLPEAHETLARLA 56
                69*************************99999985 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.059
      TPR_19  31 LAeallalgqldeAealLdalpeedpddarya 62 
                  A +l a+g+++e  +lL+a+  +d+  a++a
  KIR63184.1  80 RAHLLAAAGRPAEGLELLAAATGHDRT-ADWA 110
                 588999**************9999887.7776 PP

  == domain 3  score: 30.6 bits;  conditional E-value: 3.6e-10
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 +g+  eAla+l +a ++dp+++++ ++ A  l  +g+ldeA +  d++++ +p 
  KIR63184.1 216 AGRTREALAALGRAVDHDPDDLAVYADIAGTLADTGRLDEALEWTDRALARNPA 269
                 899**********************************************99986 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 4.4
      TPR_19  19 qedpknaearllLAeal 35 
                  + p+++    +LAe++
  KIR63184.1 299 RDHPDDSHEHGDLAECC 315
                 5789999999999*998 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 4.9
      TPR_19   9 eAlalleqalqedpkna 25 
                 +A+a l+ al+++ + +
  KIR63184.1 330 AAVAVLRHALAAEQDAL 346
                 55666666655555444 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   2.9   0.00067      0.67       3      44 .]      14      55 ..      12      55 .. 0.94
   2 !   10.5   0.6   0.00094      0.94       5      31 ..      78     104 ..      74     111 .. 0.84
   3 ?    6.5   0.4     0.018        18       3      42 ..     171     212 ..     169     212 .. 0.80
   4 !   19.4   1.2   1.3e-06    0.0013       7      38 ..     209     240 ..     205     244 .. 0.92
   5 !   15.6   0.7   2.1e-05     0.021       3      35 ..     239     271 ..     237     283 .. 0.87
   6 ?    0.8   0.3       1.2   1.2e+03      19      40 ..     330     351 ..     321     352 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00067
      TPR_14  3 allalaeallalGdpdeAiallrralalaPddaeawlllaql 44
                  lala++ l  Gd++ A+ +   al + P+ +ea+  la+l
  KIR63184.1 14 EELALARLALDEGDLAHAAGHVAGALTRSPTLPEAHETLARL 55
                5699***********************************997 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00094
      TPR_14   5 lalaeallalGdpdeAiallrralala 31 
                  a+a++l+a+G+p+e ++ll +a  ++
  KIR63184.1  78 VARAHLLAAAGRPAEGLELLAAATGHD 104
                 689*******************97655 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.018
      TPR_14   3 allalaeal.lalGdpdeAiallrralalaPdda.eawllla 42 
                 +ll +a+al ++lG+   A++ + r ++  P+ + e+wl +a
  KIR63184.1 171 LLLGAASALaRRLGEVTLAVRWASRGVRVRPSKLgEVWLGYA 212
                 6777888873579******************64448998876 PP

  == domain 4  score: 19.4 bits;  conditional E-value: 1.3e-06
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeaw 38 
                 l+ a++ +G+++eA+a+l ra++++Pdd++++
  KIR63184.1 209 LGYAYRSAGRTREALAALGRAVDHDPDDLAVY 240
                 899*************************9987 PP

  == domain 5  score: 15.6 bits;  conditional E-value: 2.1e-05
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdda 35 
                 +++++a  l+  G++deA++  +rala++P+++
  KIR63184.1 239 VYADIAGTLADTGRLDEALEWTDRALARNPAFD 271
                 68999*************************864 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 1.2
      TPR_14  19 eAiallrralalaPddaeawll 40 
                 +A+a+lr ala+  d + a  +
  KIR63184.1 330 AAVAVLRHALAAEQDALGATVR 351
                 7999******988888777766 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.8e-06    0.0058       7      34 .]     209     236 ..     207     236 .. 0.96
   2 !   12.2   0.0   0.00013      0.13       7      33 ..     243     269 ..     238     270 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.8e-06
                 HHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPnn 34 
                 lG+ay++ g+  eAl++  +A+ ++P++
  KIR63184.1 209 LGYAYRSAGRTREALAALGRAVDHDPDD 236
                 9*************************96 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00013
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPn 33 
                 ++ ++   g++deAle  ++AL  nP 
  KIR63184.1 243 IAGTLADTGRLDEALEWTDRALARNPA 269
                 56677889*****************95 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   3.0    0.0027       2.7       1      47 [.      16      59 ..      16      60 .. 0.89
   2 ?    6.1   1.6     0.018        18       2      27 ..      79     104 ..      78     109 .. 0.86
   3 ?    5.5   0.7     0.028        28      18      64 ..     157     200 ..     155     203 .. 0.77
   4 !   27.7   7.3   3.2e-09   3.2e-06       3      65 ..     209     268 ..     209     270 .. 0.96
   5 ?    2.9   1.5      0.18   1.8e+02       4      60 ..     277     335 ..     276     343 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0027
      TPR_16  1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrq 47
                lalar+al+ gd + Aa     al r    P  +eA+  l+++a++ 
  KIR63184.1 16 LALARLALDEGDLAHAAGHVAGALTRS---PTLPEAHETLARLAAVS 59
                79*************************...77777999999999875 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.018
      TPR_16   2 alaraalragdyddAaaaleaalkrd 27 
                 a+a+++++ag++++ +++l aa+  d
  KIR63184.1  79 ARAHLLAAAGRPAEGLELLAAATGHD 104
                 789999**********9999998766 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.028
      TPR_16  18 aaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                  +++ a+  +   P++a  l +   +a r+g++++A+ +  + +r  
  KIR63184.1 157 TLARNAVTVH---PEHALLLGAASALARRLGEVTLAVRWASRGVRVR 200
                 5778899999...98777777777777799*******9998876655 PP

  == domain 4  score: 27.7 bits;  conditional E-value: 3.2e-09
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 l++a++ ag+ ++A+aal +a++ d   Pd+ + +   +  ++  grl+eA+++ ++al+  p
  KIR63184.1 209 LGYAYRSAGRTREALAALGRAVDHD---PDDLAVYADIAGTLADTGRLDEALEWTDRALARNP 268
                 699**********************...*******************************8877 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.18
      TPR_16   4 araalragdyddAaaal.eaalkrdpssPdaaeAllllgdaalrq...grlaeAa.alyraa 60 
                 a+ ++ ++d d A  ++   +++++   Pd+ + +  l++++  +   g +++Aa a+++ +
  KIR63184.1 277 AHRLRFQRDGDVAHLVAlADFVRDH---PDDSHEHGDLAECCRSRpwlGQVTPAAgAAVAVL 335
                 566777777777777777999****...9*999************9**99999997877655 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.8   4.8e+03      22      34 ..      40      52 ..      38      53 .. 0.75
   2 !   17.3   0.1   2.8e-06    0.0028       1      35 [.     210     244 ..     210     251 .. 0.89
   3 ?    4.1   0.0     0.038        38       5      26 ..     248     269 ..     244     271 .. 0.86
   4 ?   -3.3   0.0       7.9   7.8e+03      31      40 ..     480     489 ..     478     490 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.8
      TPR_11 22 kldPdnaeayynL 34
                  +P+ +ea+  L
  KIR63184.1 40 TRSPTLPEAHETL 52
                55899*****766 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2.8e-06
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLG 35 
                 G+ay++ G+  eA++a+ +A++ dPd+  +y  ++
  KIR63184.1 210 GYAYRSAGRTREALAALGRAVDHDPDDLAVYADIA 244
                 99*************************99997766 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.038
      TPR_11   5 yeqGkyeeAieaYkkAlkldPd 26 
                  + G+++eA+e+  +Al+ +P 
  KIR63184.1 248 ADTGRLDEALEWTDRALARNPA 269
                 688*********9999988875 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 7.9
      TPR_11  31 yynLGlayyk 40 
                 + +LGl++++
  KIR63184.1 480 WACLGLLHHR 489
                 678*****97 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       6.8   6.8e+03       6      20 ..      17      31 ..      16      32 .. 0.85
   2 !    9.8   0.0     0.001         1       6      34 .]     208     236 ..     207     236 .. 0.93
   3 !    8.0   0.0    0.0037       3.7       3      33 ..     239     269 ..     237     270 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 6.8
                HHHHHHHHTT-HHHH CS
       TPR_8  6 nlgsiylklgdyeeA 20
                 l+++ l+ gd+  A
  KIR63184.1 17 ALARLALDEGDLAHA 31
                689999****99877 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.001
                 HHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +lg++y++ g+  eA +++ +a++ dpd+
  KIR63184.1 208 WLGYAYRSAGRTREALAALGRAVDHDPDD 236
                 69*********************999885 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0037
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +y  ++ ++ ++g+++eA e+  +al  +p+
  KIR63184.1 239 VYADIAGTLADTGRLDEALEWTDRALARNPA 269
                 7999**********************99996 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.26   2.6e+02       5      27 ..      38      60 ..      37      64 .. 0.88
   2 ?    3.4   0.0      0.12   1.2e+02      18      33 ..     208     223 ..     207     224 .. 0.91
   3 !    9.5   0.0    0.0014       1.4       4      34 .]     228     258 ..     225     258 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.26
      TPR_17  5 aleldPnnadaynnLAelllknG 27
                al + P+ ++a+  LA+l +  G
  KIR63184.1 38 ALTRSPTLPEAHETLARLAAVSG 60
                78899************987665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.12
      TPR_17  18 nLAelllknGdlmtAr 33 
                  L+++++++G++++A+
  KIR63184.1 208 WLGYAYRSAGRTREAL 223
                 69************97 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0014
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtArq 34 
                 +a+++dP++  +y   A +l+  G+l++A++
  KIR63184.1 228 RAVDHDPDDLAVYADIAGTLADTGRLDEALE 258
                 899**************************85 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.7e-05     0.017       5      32 ..     208     235 ..     206     236 .. 0.94
   2 ?   -1.7   0.0       6.3   6.2e+03      22      32 ..     293     303 ..     291     304 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeYPd 32 
                 +l+++yr++g+t++Al+al r ++  Pd
  KIR63184.1 208 WLGYAYRSAGRTREALAALGRAVDHDPD 235
                 89******99**************9998 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 6.3
                 HHHHHHHH-TT CS
       TPR_6  22 alerlikeYPd 32 
                 al ++++++Pd
  KIR63184.1 293 ALADFVRDHPD 303
                 7999******9 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.7         5     5e+03      42      64 ..      16      38 ..      11      41 .. 0.68
   2 ?    2.5   0.1      0.19   1.8e+02       9      29 ..      80     100 ..      75     107 .. 0.89
   3 ?    1.6   0.1      0.33   3.3e+02      40      75 ..     165     200 ..     156     202 .. 0.82
   4 !   17.3   2.6   4.2e-06    0.0042       8      74 ..     208     266 ..     205     269 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5
      TPR_12 42 pltattlrnLgrlyralgryeeA 64
                +++a+   + g+l +a+g+ + A
  KIR63184.1 16 LALARLALDEGDLAHAAGHVAGA 38
                56777777777777777776555 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.19
      TPR_12   9 laavlrrlgrydeAlelleka 29 
                 +a++l+++gr +e lell +a
  KIR63184.1  80 RAHLLAAAGRPAEGLELLAAA 100
                 7999*************9887 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.33
      TPR_12  40 dhpltattlrnLgrlyralgryeeAlelleealaia 75 
                  hp+ a  l + + l r+lg+   A+++  + ++++
  KIR63184.1 165 VHPEHALLLGAASALARRLGEVTLAVRWASRGVRVR 200
                 589999999999999999999999999988887776 PP

  == domain 4  score: 17.3 bits;  conditional E-value: 4.2e-06
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                  l+ ++r +gr  eAl+ l +a++       pd    ++++ +++ ++  +gr++eAle+  +ala+
  KIR63184.1 208 WLGYAYRSAGRTREALAALGRAVDHD-----PD---DLAVYADIAGTLADTGRLDEALEWTDRALAR 266
                 48999999999999999999995555.....55...6899*************************97 PP

>> TPR_5  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.62   6.2e+02      80      99 ..      80      99 ..      69     139 .. 0.76
   2 ?   10.9   0.0   0.00041       0.4      42     103 ..     207     266 ..     193     275 .. 0.89
   3 ?    0.4   0.1      0.75   7.5e+02      19      68 ..     330     381 ..     322     389 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.62
       TPR_5 80 laLvLsdlgrereavsivll 99
                +a  L+++gr++e++ ++  
  KIR63184.1 80 RAHLLAAAGRPAEGLELLAA 99
                45566666666666655433 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00041
       TPR_5  42 iqLassLRnlGeaeealaLLraeleapsdelddalaaflaLvLsdlgrereavsivllalae 103
                 + L  + R  G++ eala L   +++ +d+l  a+ a +a +L+d+gr  ea+  +  ala 
  KIR63184.1 207 VWLGYAYRSAGRTREALAALGRAVDHDPDDL--AVYADIAGTLADTGRLDEALEWTDRALAR 266
                 56777899*****************999988..9*******************998888875 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.75
       TPR_5  19 kavplYrraLaeGLa..garrrratiqLassLRnlGeaeealaLLraeleap 68 
                 +av + r+aLa+  +  ga  r  t+   s+LR +  a+ +l++  ae+++p
  KIR63184.1 330 AAVAVLRHALAAEQDalGATVRLETLEPPSALRTVAAAAPGLRVEVAEVAEP 381
                 6788888888765442266777888888999999999999998887777765 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       5.7   5.7e+03       9      27 ..      81      99 ..      81     100 .. 0.82
   2 ?    8.9   0.3    0.0014       1.4       8      29 ..     209     230 ..     207     231 .. 0.93
   3 ?   11.1   0.3   0.00028      0.28       3      31 ..     238     266 ..     237     267 .. 0.90
   4 ?    1.0   0.4      0.41   4.1e+02      20      38 ..     330     348 ..     329     349 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.7
      TPR_10  9 analrqrgrydeAeallee 27
                a++l + gr +e ++ll  
  KIR63184.1 81 AHLLAAAGRPAEGLELLAA 99
                6789999****99999865 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0014
      TPR_10   8 LanalrqrgrydeAealleeal 29 
                 L+ a+r+ gr  eA+a l +a+
  KIR63184.1 209 LGYAYRSAGRTREALAALGRAV 230
                 9****************99997 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00028
      TPR_10   3 sslnNLanalrqrgrydeAealleealai 31 
                 + + ++a +l ++gr+deA+++ ++ala+
  KIR63184.1 238 AVYADIAGTLADTGRLDEALEWTDRALAR 266
                 678899****************9999986 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.41
      TPR_10  20 eAealleealairrrllGp 38 
                 +A+a l++ala+ + +lG+
  KIR63184.1 330 AAVAVLRHALAAEQDALGA 348
                 69999************96 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       7.9   7.9e+03      23      64 ..      12      54 ..       9      56 .. 0.67
   2 ?   10.4   0.0   0.00059      0.58      27      77 ..     207     258 ..     189     263 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.9
                HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHH CS
      ANAPC3 23 pedayllAlclylngqykrAyellrka.klnskslgcrylfAq 64
                +e  ++lA   +  g+   A   +  a    ++ ++++ ++A+
  KIR63184.1 12 AEEELALARLALDEGDLAHAAGHVAGAlTRSPTLPEAHETLAR 54
                5667778888888888666666666664666666677777776 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00059
                 HHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHH CS
      ANAPC3  27 yllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAia 77 
                  +l++++ ++g+  +A+  l +a + ++ +l++   +A +l + ++++eA+ 
  KIR63184.1 207 VWLGYAYRSAGRTREALAALGRAvDHDPDDLAVYADIAGTLADTGRLDEALE 258
                 79*********************9999999999999999999*******985 PP

>> DUF3856  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         2     2e+03      99     125 ..      73      99 ..      68     102 .. 0.84
   2 ?   10.5   0.1   0.00048      0.48      45      82 ..     227     264 ..     211     267 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHHTT-HHHHHHHHHH CS
     DUF3856  99 WiaavfsravaleelGrkdealkafrm 125
                 ++ +v+ ra+ l+  Gr +e l+ +  
  KIR63184.1  73 FVGTVVARAHLLAAAGRPAEGLELLAA 99 
                 67899**************99987765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00048
                 TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
     DUF3856  45 eeafdheGfdalchaglsealaklgrydealesadkal 82 
                 + a dh+  d  ++a ++++la  gr deale +d+al
  KIR63184.1 227 GRAVDHDPDDLAVYADIAGTLADTGRLDEALEWTDRAL 264
                 6799********************************99 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.13   1.3e+02       3      33 ..      16      44 ..      16      47 .. 0.89
   2 ?    9.5   0.2    0.0011       1.1       5      34 ..     209     236 ..     209     238 .. 0.94
   3 ?    1.4   0.1      0.42   4.2e+02       3      30 ..     241     266 ..     239     269 .. 0.80
   4 ?   -2.5   0.1         7     7e+03      18      35 ..     331     348 ..     330     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.13
       TPR_7  3 lnLarlysrlGdyeeAielyeqsLaltkdpe 33
                l+Larl  ++Gd + A+++     alt++p+
  KIR63184.1 16 LALARLALDEGDLAHAAGHVAG--ALTRSPT 44
                58****************9999..9999886 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0011
       TPR_7   5 LarlysrlGdyeeAielyeqsLaltkdped 34 
                 L+ +y++ G+++eA+  + +  a++ dp+d
  KIR63184.1 209 LGYAYRSAGRTREALAALGR--AVDHDPDD 236
                 899*****************..****9987 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.42
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltk 30 
                   +a +  + G+ +eA+e   +  al++
  KIR63184.1 241 ADIAGTLADTGRLDEALEWTDR--ALAR 266
                 567889999********99888..6665 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 7
       TPR_7  18 AielyeqsLaltkdpeda 35 
                 A+ +++ +La + d ++a
  KIR63184.1 331 AVAVLRHALAAEQDALGA 348
                 899999999988887765 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.9   0.00054      0.53      14      30 ..       8      24 ..       8      28 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00054
                  X--THHHHHHHHHHHHC CS
  Sigma70_r1_2 14 PLLtaeEEveLAkriea 30
                  P L+aeEE +LA+ + +
    KIR63184.1  8 PPLSAEEELALARLALD 24
                  78***********8765 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.65   6.4e+02      10      50 ..      14      52 ..       5      58 .. 0.57
   2 ?   -3.5   0.0       4.8   4.8e+03      11      34 ..      77     100 ..      69     108 .. 0.69
   3 ?   12.0   0.4     9e-05      0.09     155     215 ..     212     269 ..     206     286 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.65
      TPR_15 10 ealklatllykqgdvkkAlevLkeaaqkaapskdteyWrtl 50
                e l+la+l++++gd++ A     ++a ++ +++  e  +tl
  KIR63184.1 14 EELALARLALDEGDLAHAAGHV-AGALTR-SPTLPEAHETL 52
                6677777777777777766555.444444.24444444444 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.8
      TPR_15  11 alklatllykqgdvkkAlevLkea 34 
                 +++ a ll++ g ++++le L++a
  KIR63184.1  77 VVARAHLLAAAGRPAEGLELLAAA 100
                 456688888888888888888544 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 9e-05
      TPR_15 155 lyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkara.esdas 215
                 +yr +g+t +Al ++ +A++ +pd+ ++ a +  +l D+gr +e   +l +w +ra +++++
  KIR63184.1 212 AYRSAGRTREALAALGRAVDHDPDDLAVYADIAGTLADTGRLDE---AL-EWTDRAlARNPA 269
                 58888999999999999999999999999999999999998886...66.788777555555 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       2.8   2.8e+03      25      43 ..      22      40 ..       9      54 .. 0.67
   2 ?    1.9   0.0       0.3     3e+02      26      55 ..      78     107 ..      74     112 .. 0.87
   3 ?   10.7   0.3    0.0005       0.5       6      51 ..     221     266 ..     216     277 .. 0.86
   4 ?   -0.6   0.1       1.7   1.7e+03      11      58 ..     294     344 ..     284     352 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.8
      TPR_20 25 rldlAlallaagryeeAle 43
                +ld  ++ +aag+++ Al+
  KIR63184.1 22 ALDEGDLAHAAGHVAGALT 40
                4444556666666666664 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.3
      TPR_20  26 ldlAlallaagryeeAleqLleilkrdrkw 55 
                 ++ A +l+aagr +e le+L +   +dr++
  KIR63184.1  78 VARAHLLAAAGRPAEGLELLAAATGHDRTA 107
                 57899***************9999888876 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.0005
      TPR_20   6 pelaeleaalaanpddldarldlAlallaagryeeAleqLleilkr 51 
                 + la+l +a+  +pddl+   d A  l+  gr +eAle   + l+r
  KIR63184.1 221 EALAALGRAVDHDPDDLAVYADIAGTLADTGRLDEALEWTDRALAR 266
                 678999*******************************965555555 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.7
      TPR_20  11 leaalaanpddldarldlAlallaa...gryeeAleqLleilkrdrkwedd 58 
                 l + + ++pdd   + dlA+   ++   g++  A+ + +++l++ +++e+d
  KIR63184.1 294 LADFVRDHPDDSHEHGDLAECCRSRpwlGQVTPAAGAAVAVLRHALAAEQD 344
                 555566667776666666665544333355555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4221.37
//
Query:       KIR63185.1  [L=343]
Description: glucosamine-6-phosphate deaminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-29  101.6   0.1    4.4e-15   55.7   0.3    2.9  2  SIS       SIS domain


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.3   2.4e-19   4.4e-15       5     130 ..      36     161 ..      34     162 .. 0.87
   2 !   42.2   0.0   3.6e-15   6.4e-11       6      88 ..     205     288 ..     201     326 .. 0.76

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 2.4e-19
                 SSEEEEEESHHHHHHHHHHHHHH.HHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEE CS
         SIS   5 akriyvlGaGtsyaiakelalkl.eeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadlal 102
                  ++++++++Gts ++a+++a+    ++g ++  +++++    g   +  +d lv+ +s+sg ++dl+++++ a++ ga ++a+T++++spla  a l +
  KIR63185.1  36 PRHVVFTARGTSDHAALYGAYLTeIRLGLPAGLASPSAVTLFG-ARPDLSDALVVGVSQSGGSPDLAEVLRTARASGALTLAVTNNPDSPLAGIAELSV 133
                 589*****************99844555555566666656667.444446779********************************************** PP

                 EEEEECHCSSSHCHHHHHHHHHHHHHHH CS
         SIS 103 yinaepetlvastksltaqlaaldalav 130
                 +i+a+ e  va+tk++ta l+al +l+ 
  KIR63185.1 134 DIAAGHERAVAATKTYTAELLALLLLVE 161
                 ***********************99985 PP

  == domain 2  score: 42.2 bits;  conditional E-value: 3.6e-15
                 SEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEE.SSSHHHHHHHHHHHHHHTTSEEEEEES CS
         SIS   6 kriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilis.fsgetkdlvaaaelakergakiiaITd 88 
                  +++ +G+G+ y++a+e+alkl+e+++ ++ + + ++l hg+la+ d+d +v+++    +  +++ ++++ + er a ++++ +
  KIR63185.1 205 AQLVTTGRGYAYPTAREAALKLMETSYLPALAFSGADLLHGPLAMTDPDVPVLAVVgSGPGGRSMGEVLPRLGERRADVVVVGS 288
                 57899**************************************************94445556666666688888888777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2545.50
//
Query:       KIR63186.1  [L=526]
Description: hypothetical protein TK50_20135 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-13   51.1   7.5    1.7e-13   51.1   7.5    2.5  2  PMT_2         Dolichyl-phosphate-mannose-protein mannosyltran
     0.0033   17.4   1.9     0.0069   16.3   1.9    1.5  1  DUF2723       Protein of unknown function (DUF2723)
  ------ inclusion threshold ------
       0.47   10.2   2.2        3.5    7.4   0.1    2.7  2  DUF4516       Domain of unknown function (DUF4516)


Domain annotation for each model (and alignments):
>> PMT_2  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   7.5   2.8e-17   1.7e-13       6     135 ..      70     198 ..      69     205 .. 0.92
   2 ?   -3.8   4.2       2.1   1.3e+04      12      30 ..     357     375 ..     307     388 .. 0.59

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 2.8e-17
       PMT_2   6 iawllalftklfgfselairlvsalagvltilllyllarrlfgkraallaalllavvplfvalsalftpdaplvllwalalylllraleknklkywlla 104
                 ++ +++ +++l g+s  a+rl+sala++ t+ l  +l  rl+g++a+l++ ll a++p    ++++ +p+a+  l+ +la++ll+rale++ ++ w+  
  KIR63186.1  70 YYLFMHGWVMLCGDSPAALRLPSALAMAGTAGLAAALGARLLGRHAGLTGGLLFAALPGTSRYAQEARPYAFVALFAVLATLLLVRALERPGWRRWAGY 168
                 5679999*****************************************************************************************999 PP

       PMT_2 105 gvlfGlgflsKytaallliaallyllisarr 135
                 ++++++  l +  a+ ll a ++++l+  +r
  KIR63186.1 169 AAAVAALGLAHLVALTLLAAHAAAVLAA-GR 198
                 9999998899999999998877777777.33 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.1
       PMT_2  12 lftklfgfselairlvsal 30 
                 +   l+g     + l++al
  KIR63186.1 357 FACLLAGAALATAVLPAAL 375
                 2222223333333333333 PP

>> DUF2723  Protein of unknown function (DUF2723)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.9   1.1e-06    0.0069      48     160 ..      93     195 ..      69     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.1e-06
     DUF2723  48 alssaltilflfltitlllrskakkiailgaglvgalafafsdtfWfsaveaeVYalsslftalvlwlilkweeeadekrsdrwlvliayligLslgvh 146
                 al+ a t+ + +++  +ll           agl g+l+fa        a ea  Ya+ +lf  l   l+++  e+       rw+  +a +++L+l++ 
  KIR63186.1  93 ALAMAGTAGLAAALGARLL--------GRHAGLTGGLLFAALPGTSRYAQEARPYAFVALFAVLATLLLVRALERPGW---RRWAGYAAAVAALGLAHL 180
                 4444444444444444444........4789********************************999999999988775...8**************866 PP

     DUF2723 147 .llnllllpaially 160
                   l+ll+  a+a+l 
  KIR63186.1 181 vALTLLAAHAAAVLA 195
                 566667766666654 PP

>> DUF4516  Domain of unknown function (DUF4516)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.3     0.051     3e+02       6      20 ..      67      81 ..      66      81 .. 0.93
   2 ?    7.4   0.1   0.00058       3.5       8      26 ..     348     365 ..     344     367 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.051
     DUF4516  6 swgeYlkfvtaslls 20
                +w+ Yl++ + ++l+
  KIR63186.1 67 TWPYYLFMHGWVMLC 81
                7************98 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00058
     DUF4516   8 geYlkfvtasllsMlaGAq 26 
                 ++Yl+fv + ++++laGA 
  KIR63186.1 348 PRYLFFV-VPFACLLAGAA 365
                 68*****.9********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3611.56
//
Query:       KIR63187.1  [L=570]
Description: sulfite reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-47  159.2   0.0    4.7e-35  120.4   0.0    2.3  2  NIR_SIR       Nitrite and sulphite reductase 4Fe-4S domain
    6.7e-35  118.8   0.4    4.5e-18   64.9   0.0    2.8  3  NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half 


Domain annotation for each model (and alignments):
>> NIR_SIR  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   0.0   5.3e-39   4.7e-35       2     156 ..     177     328 ..     176     331 .. 0.95
   2 !   36.5   0.0   3.6e-13   3.2e-09       6     148 ..     427     570 .]     424     570 .] 0.87

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 5.3e-39
                 SSSCCCCCCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   2 ganlrnvtlcpgaglceeallDttelakaiedelepeygetylPrKfKiavsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakktsa 100
                 g++ r v ++p ag+ e +llD t++ ++i +++ ++ ++++lPrKfK+++s   +     eanDi+++gv ++e+  gf ++vGGgl+++++ +k + 
  KIR63187.1 177 GDCPRIVLGSPVAGVAEAELLDPTPALEEIVRRYVGDKRFSNLPRKFKTSISWLVD--TPYEANDIAFLGVDHPEHGPGFDVWVGGGLSTNPMLAKRLG 273
                 89999************************************************965..56678************************************ PP

                 EEEEEEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHHHHHHHHHHH.HHCCT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
     NIR_SIR 101 rlgfvpeeevlevveaivevyrdhgdrknrkkeRlkylverlGvekFrekv.eeelg 156
                   ++vp  ev +v+ ++v ++rd+g+r  r+++Rlk lv+++GvekFre++ +e+lg
  KIR63187.1 274 --VWVPLTEVPDVWAGVVGIFRDYGYRRLRNRARLKFLVADWGVEKFREVLeKEYLG 328
                 ..7************************************************666666 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 3.6e-13
                 CCCCCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEE..EEETTCEE..EEEEEE--B-SSSTC-TCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   6 rnvtlcpgaglceeallDttelakaiedelepeygetylPrKfKiavsgcpnncvaveanDiglvg..vkkdekei..gfnilvGGglgrthgakktsa 100
                 r +++c+g ++c+ a+++t+   +++  +le+++++  +++   i + gcpn c++ ++ Digl g  v+ ++++   gf++ +GGglg  +g+++ + 
  KIR63187.1 427 RGTMACTGIEFCKLAIVETKARGEELVARLEERLRD--FDADISIHLNGCPNACARTQVADIGLKGqlVVGPDGRQveGFQVHLGGGLGMAQGQTAGFG 523
                 77899***************9999999999998875..677899*******************965224444444457********************9 PP

                 EE...EEEEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHHHHHHHH CS
                 xx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR 101 rl...gfvpeeevlevveaivevyrdhgdrknrkkeRlkylverlGvekFr 148
                 r      ++++e+ e+ve + + y     ++  + e ++++v r+  e++r
  KIR63187.1 524 RKlrgLKTTADELPEYVERLARRYL----ASRTEGESFANWVIRVDEEELR 570
                 988977777779*************....9999999999999999988875 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0     5e-22   4.5e-18       4      68 ..     105     167 ..     101     168 .. 0.93
   2 ?   -3.1   0.0      0.82   7.3e+03      53      64 ..     275     286 ..     274     288 .. 0.88
   3 !   51.2   0.0   9.1e-18   8.2e-14       1      66 [.     350     413 ..     350     416 .. 0.96

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 5e-22
  NIR_SIR_ferr   4 kdgkgyymvrlrvpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeLae 68 
                   +d  +++m+r+rv +G++t +qlr +adi++++++ ++++T rQn+q h+++ ed +ei+++L+ 
    KIR63187.1 105 ED--EFFMLRVRVDGGQLTLDQLRVVADISREFARDTADITDRQNIQYHWIRVEDMPEIWRRLES 167
                   55..678*******************************************************986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.82
  NIR_SIR_ferr  53 gvpeedleeile 64 
                   +vp  +++++++
    KIR63187.1 275 WVPLTEVPDVWA 286
                   899*******98 PP

  == domain 3  score: 51.2 bits;  conditional E-value: 9.1e-18
  NIR_SIR_ferr   1 hkqkdgkgyymvrlrvpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeL 66 
                   h+q+dg   ++v++ +  Gr++  ql +lad++e++gsg++rlT+ Q l++ +vp+e+   + +eL
    KIR63187.1 350 HRQRDGR--AYVGAAPVVGRVSGTQLARLADVVEAHGSGRVRLTPYQKLLVLDVPPERTGSLVAEL 413
                   7899988..99***************************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3750.02
//
Query:       KIR63188.1  [L=254]
Description: phosphoadenosine phosphosulfate reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-45  153.9   0.0    5.5e-45  153.5   0.0    1.1  1  PAPS_reduct  Phosphoadenosine phosphosulfate reductase family


Domain annotation for each model (and alignments):
>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.5   0.0   3.1e-49   5.5e-45      10     173 ..      68     229 ..      62     230 .. 0.96

  Alignments for each domain:
  == domain 1  score: 153.5 bits;  conditional E-value: 3.1e-49
                  CTCHHHHHHHHHHCTTHEEEEEE-STB-HHHHHHHHHHHHHTT-EEEEEE-SCHHHHHHHHHH-S-THHHC...HHHHHHTHHHHHHHHHCTTECEEE CS
  PAPS_reduct  10 kdslVllhLalkafkpvpvvfvdtghefpetiefvdeleeryglrlkvyepeeevaekinaekhgsslyee...aaeriaKveplkkaLekldedall 104
                  + ++Vl hL++++ + v vvf+dtg +fpet++ +de+++r+ +++   +p+ +v ++  +++   +l+++    +++++Kvepl++aL ++d  a+ 
   KIR63188.1  68 MADAVLAHLVSRVAPGVDVVFLDTGLHFPETLRVRDEVARRLPVNVRSIRPRLTVGQQDGEYG--PRLFNRspdDCCQLRKVEPLERALAGYD--AWA 161
                  6789********************************************************999..488888899*******************..*** PP

                  ----CCCTTTTTTSSSEEECTTT-SCEEE-CCCT--HHHHHHHHHHCT--B-CCCCTT-SS--BCTTB- CS
  PAPS_reduct 105 tGaRrdesksraklpiveidedfekslrvfPllnWteedvwqyilrenipynpLydqgfrsiGcvpctg 173
                  +G+Rrdes++ra++p+v +d++    ++v+P++ W++ dv +yi r++ip+n+L+++g+ siGc+pct+
   KIR63188.1 162 AGLRRDESPTRANTPVVTFDARRG-RVKVNPIAAWKQADVDAYIARHDIPVNELFKRGYGSIGCWPCTR 229
                  **********************77.9*****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1805.63
//
Query:       KIR63189.1  [L=316]
Description: DeoR faimly transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-26   90.4   0.0    9.3e-26   89.9   0.0    1.3  1  DAGK_cat    Diacylglycerol kinase catalytic domain
    6.1e-06   25.6   0.3    1.2e-05   24.7   0.3    1.4  1  NAD_kinase  ATP-NAD kinase


Domain annotation for each model (and alignments):
>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.0     1e-29   9.3e-26       2     116 ..       3     126 ..       2     140 .. 0.80

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 1e-29
                 EEEEE-TTCTTTTHHHHHHHCHHHHHHCTCEEEEEE--STTHHHHHHHHHHHCC-SEEEEEESHHHHHHHHHHHCT....HHCTT..........SEEE CS
    DAGK_cat   2 llvivNpksGkgkgekllrkvrelleeagvelelieteepgdakelakeakeegvdlivvaGGDGtvsevlnglle....elatk..........pplg 86 
                 ++++vNpk+ +++ ++    vr l +  +v+l++++t ++g+a +la+ea+eegvdl+v +GGDGtv+ev+ngl+     +              p+l+
  KIR63189.1   3 AVLVVNPKATTTSERSRDVLVRAL-R-SEVDLSVRYTRRRGHAMDLAREAAEEGVDLVVTLGGDGTVNEVVNGLMAaeppT---IrtggspaerlPALA 96 
                 799******866665555555554.4.58899********************************************65551...15556666666**** PP

                 EEE-SS--HHHHHCT--SSHHHHHHCHHCT CS
    DAGK_cat  87 iiPlGtgNdlaralgigkdieealesiikg 116
                 ++P+G++N +aralg++++ +e ++ i++g
  KIR63189.1  97 TVPGGSTNVFARALGLPREWPEGTSMILEG 126
                 ******************888866666544 PP

>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.3   1.4e-09   1.2e-05      65     104 ..      38      80 ..       3      83 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.4e-09
                 ....EEECCC-TTTTTSSSEEEEEE-HHHHHHHHHHHHHCT-E CS
  NAD_kinase  65 d...dtrkaleafadagvdliivvGGDGTaldvarllqkaeiP 104
                 +      + +++ a++gvdl++++GGDGT+ +v+  l +ae+P
  KIR63189.1  38 RrrgHAMDLAREAAEEGVDLVVTLGGDGTVNEVVNGLMAAEPP 80 
                 2466677789999***********************9999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2315.67
//
Query:       KIR63190.1  [L=129]
Description: hypothetical protein TK50_20165 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 959.47
//
Query:       KIR63191.1  [L=134]
Description: anti-sigma regulatory factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-06   27.0   0.2    3.9e-06   26.8   0.2    1.2  1  HATPase_c_2  Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.2   2.2e-10   3.9e-06       2      72 ..      20      87 ..      19     117 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.2e-10
  HATPase_c_2  2 sadpehvrtvrevaeavlrraglseelldeirlaveEactNavehayleapegpvevrlesdeealtveva 72
                 +ad  ++  +r +++ +++r +++ ++++++r+av+Eac+     a+++   +++e+r++++e+altvev+
   KIR63191.1 20 PADGGYLGVLRTATAGLAARLQFALDEIEDLRIAVDEACAMLLAIATRD---AELECRFQVTEDALTVEVT 87
                 78888999999999999******************************96...5599999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1059.41
//
Query:       KIR63192.1  [L=177]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-12   47.9   0.0    1.7e-12   47.6   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.9e-07   30.8   0.0    4.2e-07   30.3   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
      1e-06   28.7   0.0    1.2e-06   28.5   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    9.9e-06   25.4   0.0    1.9e-05   24.5   0.0    1.4  1  FR47             FR47-like protein
     0.0006   20.0   1.0    0.00094   19.4   1.0    1.3  1  Acetyltransf_6   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   4.8e-16   1.7e-12      26     116 ..      51     140 ..      22     141 .. 0.75

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 4.8e-16
                     HHHHSTTCEEEE.EEETTEEEEEEEEEEEET..TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTT CS
  Acetyltransf_1  26 esfsleaegllv.aeedgeliGfisllkipd..ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklG 116
                     +    +a ++ v +   ++++Gf+  + +       + +y+e+l+V+pe+rg G+G++Ll +l+ ++ e+g++++ +   ++n +a r+Y   G
      KIR63192.1  51 PT---PALFGHVaVDGADRPLGFALWFLNFStwAGVHGIYLEDLYVRPEARGTGAGRRLLATLAAICVERGYRRLDWSMIDWN-PAARFYASIG 140
                     22...33344442444499*****8888877998899**************************************99999999.7779995565 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.2e-10   4.2e-07      12      73 ..      65     140 ..      45     140 .. 0.66

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.2e-10
                     TEEEEEEEEEEES........TCTEEEEE-GGGTTSSHHHHHHHH..TT...SEEEEE.EEEETHHHHHHHHHHTT CS
  Acetyltransf_7  12 gkivGfialslld........aeitrlaVdpeyrgkGiGraLlea..ae...kgiile.qlelnaekaikfYeklG 73 
                     ++++Gf+   l+          +++ l+V+pe+rg G Gr+Ll+   a+   +g++    +  + ++a++fY++ G
      KIR63192.1  65 DRPLGFALWFLNFstwagvhgIYLEDLYVRPEARGTGAGRRLLATlaAIcveRGYRRLdWSMIDWNPAARFYASIG 140
                     55666655444446666554445555*****************9434224556654222222233489****9987 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   3.4e-10   1.2e-06      52     105 ..      84     140 ..      29     146 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 3.4e-10
  Acetyltransf_10  52 s..hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYeklG 105
                      +  +++ l+V+pe+rg+G g++Ll ++ + + ++g++  + ++   + a +fY ++G
       KIR63192.1  84 HgiYLEDLYVRPEARGTGAGRRLLATLAAICVERGYRRlDWSMIDWNPAARFYASIG 140
                      045999************************************************999 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   5.3e-09   1.9e-05      23      78 ..      87     142 ..      83     148 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 5.3e-09
                 SEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-E CS
        FR47  23 elgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfe 78 
                 +l  l+v+pe+r+ G g+rl + la+  +erg+  l +  ++ +p+ r+y ++G  
  KIR63192.1  87 YLEDLYVRPEARGTGAGRRLLATLAAICVERGYRRLDWSMIDWNPAARFYASIGAS 142
                 57789************************************************965 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   1.0   2.6e-07   0.00094      26     135 ..      12     126 ..       4     135 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.6e-07
  Acetyltransf_6  26 tdpedleallelf..raqwarrpdvfadpltraflrdllaalaargalrlyvlrl.dgrpvAvalglrsgdrlyywlggy......dpelaklsp 111
                     ++ped+ a+++ +   a ++r  +   +    ++ ++l+       al  +v+    +rp+++al++    ++    g y      +pe+++ ++
      KIR63192.1  12 ARPEDVPAVVAMVheLAAYERA-ADECHLTAGQLTEALFGPT---PALFGHVAVDgADRPLGFALWFLNFSTWAGVHGIYledlyvRPEARGTGA 102
                     4677777777777222445555.6666566666777776665...444555555526********9999999999888884444456669***** PP

  Acetyltransf_6 112 gllllweliedaaeeGlrrfdlgg 135
                     g+ ll+ l++ ++e+G+rr+d+  
      KIR63192.1 103 GRRLLATLAAICVERGYRRLDWSM 126
                     *********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 1582.02
//
Query:       KIR63193.1  [L=134]
Description: superoxide dismutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-46  156.4   0.1    5.8e-46  156.2   0.1    1.0  1  Sod_Ni         Nickel-containing superoxide dismutase
  ------ inclusion threshold ------
      0.021   15.3   0.0      0.031   14.7   0.0    1.2  1  Phage_clamp_A  Bacteriophage clamp loader A subunit
      0.074   12.7   0.1       0.15   11.7   0.0    1.5  2  ALC            Phage ALC protein


Domain annotation for each model (and alignments):
>> Sod_Ni  Nickel-containing superoxide dismutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.2   0.1   9.8e-50   5.8e-46       2     127 .]      12     132 ..      11     132 .. 0.97

  Alignments for each domain:
  == domain 1  score: 156.2 bits;  conditional E-value: 9.8e-50
      Sod_Ni   2 easAHCdipCgiYdpaqarvealtvkkatkkiaeledkesdaakqnqlsRlvaiKEehaekvkeeilvlwtdYfkaqrlekypelhelvhkvmkaaska 100
                 ++sAHCd+pCg+Ydpaqar+ea+++k++++k+++++d+e++       +R++ iKE++ae vk++++vlwtdYfk+ ++ekyp+lh+l+++++k+a+++
  KIR63193.1  12 TVSAHCDLPCGVYDPAQARIEAESIKAIAEKYQANTDPEFR-------TRALIIKEQRAELVKHHLWVLWTDYFKPAHFEKYPNLHTLFNEATKLAGAS 103
                 699**************************************.......9*********************************************98775 PP

      Sod_Ni 101 ..kqevdkekaeeLlekveelaeifwetK 127
                   k ++d++kaeeLl+k+ee+++ifwetK
  KIR63193.1 104 gaKGSADPAKAEELLAKIEEISKIFWETK 132
                 55*************************98 PP

>> Phage_clamp_A  Bacteriophage clamp loader A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   5.2e-06     0.031      83     129 ..      31      77 ..      25      81 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.2e-06
                    HHHHHHHHHHHHCT--HHHHHHHHHHHHHTTTTHHHHHHHTT--THH CS
  Phage_clamp_A  83 tevlivkllakryqvnkndaidyksiltkngklplvlkelkglvtdd 129
                     e + +k +a++yq n++     ++++ k+ +  lv ++l  l td 
     KIR63193.1  31 IEAESIKAIAEKYQANTDPEFRTRALIIKEQRAELVKHHLWVLWTDY 77 
                    57889***********************************8888875 PP

>> ALC  Phage ALC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.51     3e+03      11      19 ..      39      47 ..      20      65 .. 0.61
   2 ?   11.7   0.0   2.5e-05      0.15      52      82 ..     104     134 .]      87     134 .] 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.51
         ALC 11 vvelyddtv 19
                ++e y+  +
  KIR63193.1 39 IAEKYQANT 47
                333333333 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.5e-05
         ALC  52 kvraearlkqarellaelveeskvfleirla 82 
                   +  a + +a+ella++ e sk f+e ++a
  KIR63193.1 104 GAKGSADPAKAEELLAKIEEISKIFWETKQA 134
                 556678899******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1074.99
//
Query:       KIR63194.1  [L=392]
Description: malate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-31  107.8   0.6    8.4e-29  100.6   0.0    2.8  2  malic          Malic enzyme, N-terminal domain
    1.3e-21   77.0   4.6    5.2e-20   71.8   4.6    2.3  1  Malic_M        Malic enzyme, NAD binding domain
  ------ inclusion threshold ------
       0.16   11.3   4.4      0.048   13.0   1.3    1.7  2  ThiF           ThiF family
       0.19   11.4   1.7        0.3   10.8   0.5    1.9  2  ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydro


Domain annotation for each model (and alignments):
>> malic  Malic enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0   1.9e-32   8.4e-29       3     181 ..      20     150 ..      18     151 .. 0.95
   2 ?   -3.2   0.1       1.4   6.2e+03     102     111 ..     208     217 ..     193     226 .. 0.57

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 1.9e-32
                 TECCCCCCHHCCCHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS.SS..EEEEE-SSSBTTTBS-G.HHHHHHHHHHHHHHH CS
       malic   3 knetlfykllkekleellpivYtPtvgeacqeyseeyrkarglylsikdkekikeilknlpeedvkvivvtdgeriLGlGdlG.vagvgimvGKlaLyt 100
                 k+ +  + +l+++  e+l+++YtP+v+++c++++ ++  a  +y+  +++                v+vvtdg+++LGlG++G  a++++m+GK++L++
  KIR63194.1  20 KLAVASTVPLSSR--EDLSLAYTPGVARVCEAIAADPALAD-DYTWAGHT----------------VAVVTDGSAVLGLGNIGpRAALPVMEGKAVLFK 99 
                 5566677788888..**************************.********................********************************* PP

                 HHHS-EGGGEEEEEECS-BS.HHHHC.TT..S.SSB...SHHHHHHHHHHHHHHHHHHGCTSEEEE-S--CCHHHHHHHHH CS
       malic 101 alagidPekvlpvvldvgtnneelledplYlGlrkkRvkgeeydefvdefveavkelfppkaliqfEDfkaknafeilery 181
                 ++a++d   ++pv+ld++                           +vde+v++vk+l+p++++i++ED++a+++fe+++r+
  KIR63194.1 100 QFADVD---AVPVCLDTQ---------------------------DVDEIVAVVKALAPSFGGINLEDISAPRCFEVERRL 150
                 ******...*********...........................9********************************997 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.4
                 HHS-EGGGEE CS
       malic 102 lagidPekvl 111
                 ++g+dP++v+
  KIR63194.1 208 AGGVDPARVV 217
                 4555555543 PP

>> Malic_M  Malic enzyme, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   4.6   1.2e-23   5.2e-20       3     257 ..     165     384 ..     163     385 .. 0.85

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 1.2e-23
                 HHHHHHHHHHHHHHHHH-S-GGG--EEEEC-SHHHHHHHHHHHHHHHTTTS-HHHHHTTEEEEETTEE-BTT-S---TTTGGGSBS--SS--S....SH CS
     Malic_M   3 gTaavalagllaalkitgkklseqkivvlGaGsagiGiaeqivealvkeGlseeeakkkiylvDrkGLltedrekleeekkpfakkkeelkeakdkltL 101
                 gTa+v+la+l +a+ + ++kl + ++ v GaG+ag+ ++ ++++  v+          ++ + D+kG++ ++r++l+ +k  +a +++   +   + ++
  KIR63194.1 165 GTAIVVLAALRNAAALLNRKLGDLRVAVSGAGAAGVAVTRMLIAGGVDP--------ARVVVCDSKGIIGRHRTDLTGTKADLAADTNAEGR---SGDI 252
                 9***********************************9998887665543........4899**********************998887764...4688 PP

                 HHHHHHH--SEEEE-SSSSS-S-HHHHHHHHHHSSS-EEEE--SSGGGSSS-HHHHHHHTTT-SEEEESS----EEETSEEE--EE--GGGTHHHHHHH CS
     Malic_M 102 eevvkkvkptvliGlsgvagafteeivremaksterPiilplSNPtskaEataedvlkwtdgkalvasGsPfkpvelngktyeigQaNNayifPglglg 200
                 +e+++   ++vl+G+sg  g + e +v  ma   +  i+++l NPt   E  +e + +     a+va+G          +  +++Q NN+++fPg+  g
  KIR63194.1 253 AEALRG--ADVLVGVSG--GEICEAAVAGMA---PGGIVFALANPTP--EVHPEVAAR---HVAVVATG----------RSDYPNQINNVLAFPGVFRG 329
                 999886..69******8..667788777776...678*********8..556776655...46899987..........67789*************** PP

                 HHHTT-SS--HHHHHHHHHHHHTT--HHHHHTT-SS--GGGHHHHHHHHHHHHHHHH CS
     Malic_M 201 vivarakritdemllaaaealaelvseeelkegsllPelseirevslkvavavakaa 257
                 ++ ara+ritd m +aaa+a+a +v ++ ++ +++ P+  +   v+ +va ava+aa
  KIR63194.1 330 ALDARATRITDGMKVAAADAIAGVVADTLTA-DAIVPSPLDP-RVAPAVAEAVAEAA 384
                 *************************998877.6666654443.47777888887766 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       1.2   5.2e+03     106     126 ..     100     120 ..      89     124 .. 0.70
   2 ?   13.0   1.3   1.1e-05     0.048      12      49 ..     181     220 ..     164     224 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.2
                 HHTT-SEEEEESSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
        ThiF 106 llesvDlVvdalDniearrlv 126
                  + +vD+V  +lD+ ++  +v
  KIR63194.1 100 QFADVDAVPVCLDTQDVDEIV 120
                 466779999999987766555 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.1e-05
                 HHHHHHTSEEEEE--SHHHHHHHHHHHHHTTT..EEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx RF
        ThiF  12 gqekLrdskvllvGaGglGsellknLalsGvg..kltlvD 49 
                   +kL d +v++ GaG+ G  + ++L++ Gv   ++ + D
  KIR63194.1 181 LNRKLGDLRVAVSGAGAAGVAVTRMLIAGGVDpaRVVVCD 220
                 5679999***********************9644776666 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.36   1.6e+03      36      57 ..      75      95 ..      65     124 .. 0.82
   2 ?   10.8   0.5   6.8e-05       0.3       4      69 ..     160     226 ..     158     275 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.36
                   EEE--SHHHHHHHHHHHHCT-E CS
  ELFV_dehydrog 36 aisGsGnvgsyaallltelgak 57
                   a+ G Gn+g  aal ++e g+ 
     KIR63194.1 75 AVLGLGNIGPRAALPVME-GKA 95
                   78899****999999977.444 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 6.8e-05
                    TTTTTHHHHHHHHHHHHHHHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-..EEEEEEESSEEEE CS
  ELFV_dehydrog   4 ldrpeaTglGvvyyveemlkklkldslegkrvaisGsGnvgsyaallltelga..kvvavsDssGviy 69 
                    +d ++ T++ v++++++++  l+ + l + rva+sG G  g ++ ++l+  g     v v Ds+G+i 
     KIR63194.1 160 HDDQHGTAIVVLAALRNAAALLNRK-LGDLRVAVSGAGAAGVAVTRMLIAGGVdpARVVVCDSKGIIG 226
                    5666778888888888888888887.99***************9999998765114578899999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3053.01
//
Query:       KIR63195.1  [L=323]
Description: chlorophyllase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-09   37.3   0.0    2.2e-09   36.6   0.0    1.2  1  Chlorophyllase2  Chlorophyllase enzyme
    1.3e-08   33.7   0.0    0.00025   19.7   0.0    2.2  2  PAF-AH_p_II      Platelet-activating factor acetylhydrolase, 
    3.8e-08   32.9   0.8      0.013   14.7   0.0    3.0  2  Hydrolase_4      Serine aminopeptidase, S33
    3.7e-07   29.5   0.0    6.2e-07   28.7   0.0    1.4  1  Chlorophyllase   Chlorophyllase
      9e-05   22.1   0.1    0.00016   21.3   0.1    1.3  1  DLH              Dienelactone hydrolase family
     0.0011   18.4   0.6       0.18   11.3   0.3    2.3  2  Peptidase_S9     Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.032   14.0   0.0    1.5  2  Abhydrolase_5    Alpha/beta hydrolase family
       0.19   11.5   0.0       0.39   10.5   0.0    1.4  1  Abhydrolase_2    Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   9.6e-13   2.2e-09      13     108 ..      99     202 ..      95     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 9.6e-13
  Chlorophyllase2  13 eageYpvllflhGylllnslYsqlLkhiashgfivvapqlykvaeadakeiksaakvlnWlakgLesvlp......eevep..dlsklalsgHS 98 
                       +g++pv++f hG++ +++ Y+ lL++ a  gf+v ap + ++a    +++  + ++   ++  L++vl+      + ++   + +++a +gHS
       KIR63195.1  99 ATGRFPVVMFSHGLNGRPDDYELLLTRWAAAGFVVAAPAFPHTARGTDTNVLDVLNQPADVSYALTRVLAldakagDPLRGrlATDRVAAAGHS 192
                      579***********************************9999655545777777777777899999999887777744444115689******* PP

  Chlorophyllase2  99 rGgktafala 108
                      +Gg t + l 
       KIR63195.1 193 AGGVTTIGLF 202
                      ***9988765 PP

>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.1e-07   0.00025      96     133 ..      99     136 ..      91     145 .. 0.89
   2 !   11.8   0.0   2.9e-05     0.064     220     280 ..     176     237 ..     147     248 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.1e-07
                  -SS-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE CS
  PAF-AH_p_II  96 tkekyPlivFsHGLgafRtlYsalcielAskGfvvaav 133
                  + +++P+++FsHGL +    Y  l +  A+ Gfvvaa 
   KIR63195.1  99 ATGRFPVVMFSHGLNGRPDDYELLLTRWAAAGFVVAAP 136
                  4589********************************96 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.9e-05
                  GGTT-EEEEEEEEEEETHHHHHHH..HHHHH-TTS-EEEEES---TTS-GGGGGG--S-EEEE CS
  PAF-AH_p_II 220 qlKdnldtskvaviGHsFGgAtvi..kslsedteFrcaialDaWmlPveeevyskvrqPllfi 280
                   l++ l t +va +GHs Gg t+i   +  +d +   ++++ +  l v+  +   +  P lf+
   KIR63195.1 176 PLRGRLATDRVAAAGHSAGGVTTIglFTAGRDDRLDAGVVFAGTCLGVGTAFA-GAAAPQLFV 237
                  5899*******************976678889999999999988888876554.455666666 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.3   8.1e-06     0.018       6     115 ..     105     225 ..     102     232 .. 0.75
   2 !   14.7   0.0     6e-06     0.013     191     224 ..     231     263 ..     225     273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.1e-06
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavya..lDhrGhGrse........gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGlially 93 
                  vv+++HGl+   + y+ l  ++aa+Gf v+a  + h   G           ++ +  + +  +  D++a  + ++ +  + ++   GhS GG++++ +
   KIR63195.1 105 VVMFSHGLNGRPDDYELLLTRWAAAGFVVAApaFPHTARGTDTnvldvlnqPADVSYALTRVLALDAKAG-DPLRGRLATDRVAAAGHSAGGVTTIGL 201
                  899************************9997333444444444448888444444444444455555544.8888888889***************99 PP

  Hydrolase_4  94 l.lrypdkva.glilsaPalkika 115
                  + + + d+++ g++++++ l++ +
   KIR63195.1 202 FtAGRDDRLDaGVVFAGTCLGVGT 225
                  966666689999999999998875 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 6e-06
  Hydrolase_4 191 tlPllllhGeaDkvvdpeasrelyerlgskdktl 224
                   +P l++hG+aD+vvd++  +++y++++   k +
   KIR63195.1 231 AAPQLFVHGKADEVVDYASGKAAYDKVPWP-KAM 263
                  589***********************9974.444 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   2.8e-10   6.2e-07      41     136 ..      98     200 ..      90     231 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2.8e-10
  Chlorophyllase  41 aeaGtypvvlflhGtllsnkfyskllnhiashGfivvaPqlykllp...PsaqdeidsaaevieWlseglkavlp....tsveanlsklalvGhs 128
                     a  G +pvv+f hG   + ++y  ll   a+ Gf+v aP + + +     +  d +++ a+v   l++ l    +          ++++a +Ghs
      KIR63195.1  98 AATGRFPVVMFSHGLNGRPDDYELLLTRWAAAGFVVAAPAFPHTARgtdTNVLDVLNQPADVSYALTRVLALDAKagdpLRGRLATDRVAAAGHS 192
                     568*************************************988887433445567788888887777665444333322344456789******* PP

  Chlorophyllase 129 rGGktafa 136
                      GG t+  
      KIR63195.1 193 AGGVTTIG 200
                     ***99765 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   7.3e-08   0.00016       6     162 ..      96     249 ..      92     258 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 7.3e-08
         DLH   6 atpknakkpvvvviqeifGvndnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddlkaavaylks...vpevstkkvg 101
                 at +  ++pvv+  + + G  d+ +    r a +G+v+ aP +             ++++ld l ++ + +  l ++  a+++ +    +++  t++v+
  KIR63195.1  96 ATAATGRFPVVMFSHGLNGRPDDYELLLTRWAAAGFVVAAPAFPHTAR------GTDTNVLDVLNQPADVSYALTRV-LALDAKAGdplRGRLATDRVA 187
                 55566699*********************************9865444......34555555556666555555555.233333330113346899*** PP

         DLH 102 vvGfCmGGalalll..aaevpevdaavafYGlspekeleeaakikapilalfgeeDefipade 162
                 + G   GG  ++ l  a +++++da v+f G +     ++ a ++ap l+++g++De+++ ++
  KIR63195.1 188 AAGHSAGGVTTIGLftAGRDDRLDAGVVFAG-TCLGVGTAFAGAAAPQLFVHGKADEVVDYAS 249
                 ********877654227777***********.777888889999**************99775 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.3   7.8e-05      0.18      61      96 ..     181     217 ..     177     226 .. 0.81
   2 !    5.0   0.0    0.0065        14     143     169 ..     231     257 ..     224     278 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.8e-05
                   --GGGEEEEEETHHHHHHHHHHH.H-GGG-SEEEEES CS
  Peptidase_S9  61 vdserlaitGgSyGGyltgaaln.qrpdlFkaavaev 96 
                     ++r+a+ G+S+GG++t  + +  r+d+ +a+v  +
    KIR63195.1 181 LATDRVAAAGHSAGGVTTIGLFTaGRDDRLDAGVVFA 217
                   5689*************98888767888877777655 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0065
                   --EEEEEEETT-SSS-THHHHHHHHHH CS
  Peptidase_S9 143 ypplLlihGlaDdrvppaealklvaaL 169
                    +p L++hG aD+ v +a++   ++++
    KIR63195.1 231 AAPQLFVHGKADEVVDYASGKAAYDKV 257
                   5799**************999888875 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.6   5.9e+03       4      35 ..     108     139 ..     106     148 .. 0.79
   2 ?   14.0   0.0   1.4e-05     0.032      58     140 ..     185     271 ..     166     274 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.6
  Abhydrolase_5   4 fYpGakveaesYaelaeklaksGyevvlvklP 35 
                    f  G +  +  Y  l+++ a +G+ v    +P
     KIR63195.1 108 FSHGLNGRPDDYELLLTRWAAAGFVVAAPAFP 139
                    55666667788999999999999999888877 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.4e-05
  Abhydrolase_5  58 kfvvgGhslGGvvasrfaa..eeekie.gvvflasYPe.kdelselskkvlsivgteDgvlnvkslekakkflpkdtkvvsieGgnh 140
                    +   +Ghs GGv +  + +  ++++++ gvvf ++       +  ++ + l + g+ D+v+++ s + a +++p    ++s+  g+h
     KIR63195.1 185 RVAAAGHSAGGVTTIGLFTagRDDRLDaGVVFAGTCLGvGTAFAGAAAPQLFVHGKADEVVDYASGKAAYDKVPWPKAMLSLPKGDH 271
                    56679*******9876533247788873677766655557889999*******************9999999998888888777777 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00017      0.39     102     180 ..     181     255 ..     158     258 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
                    --GGGEEEEEETHHHHHHHHHHHT-SS.--SEEEEES---T.TGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHH CS
  Abhydrolase_2 102 ipssriiigGFSqGaalalylaltlpk.klggivafsgalp.lsqklessatavtkklpilqiHgeeDpvvplalgkaake 180
                    +  +r++  G S G++ ++ l  + +  +l   v f g+++   ++++    a     p l +Hg+ D+vv++a gkaa+ 
     KIR63195.1 181 LATDRVAAAGHSAGGVTTIGLFTAGRDdRLDAGVVFAGTCLgVGTAFAG---AA---APQLFVHGKADEVVDYASGKAAYD 255
                    6678999999999999888887777666665555566665515555553...33...5999****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2227.12
//
Query:       KIR63196.1  [L=375]
Description: acetate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.2e-131  438.2   0.0   5.5e-130  433.6   0.0    2.0  1  Acetate_kinase  Acetokinase family
     0.0072   16.6   0.5      0.015   15.6   0.5    1.5  1  FAO_M           FAD dependent oxidoreductase central domain
  ------ inclusion threshold ------
       0.17   11.5   0.0       0.24   11.1   0.0    1.2  1  HCV_NS2         Hepatitis C virus non-structural protein NS2


Domain annotation for each model (and alignments):
>> Acetate_kinase  Acetokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.6   0.0  9.2e-134  5.5e-130       2     390 .]       4     365 ..       3     365 .. 0.97

  Alignments for each domain:
  == domain 1  score: 433.6 bits;  conditional E-value: 9.2e-134
  Acetate_kinase   2 vLviNaGSsSlKfqlleaeakeevllkglveeilleeaellkklegekkeaektaiadheealklilntlkeekvikdlkeiaaighRvvhggek 96 
                     vLv+N+GSsS+K+ l++    +evl+kg ve+++++                    adhe+a++ il+ l      + l+ ++a+ghRvvhgg  
      KIR63196.1   4 VLVLNCGSSSVKYRLYDG---DEVLAKGTVERVGEPGGGP----------------ADHETAVREILDRLGP----DGLAGLTAVGHRVVHGGRR 75 
                     8*****************...59*********99886543................699***********99....7899*************** PP

  Acetate_kinase  97 ftesvlitdevvekikdlielaplhNpanlegieaakkllpevknvavfDtafhqtlpeeaylyalpeelyeehgiRrygfHgtshkyvskraak 191
                     fte+vl++d+v ++i++l++laplhNpanl gi++a+++lp v++vavfDtafh+tlpe+a+ ya+ ++ ++++ iRrygfHgtsh yvs+r+a+
      KIR63196.1  76 FTEPVLVDDAVFAAIEELVPLAPLHNPANLAGIRVAREALPGVPQVAVFDTAFHHTLPEAAATYAIDRDTARRYDIRRYGFHGTSHAYVSRRTAE 170
                     *********************************************************************************************** PP

  Acetate_kinase 192 ilgkpledlnlivcHlGnGaSvaavknGksvdtsmgltpLeGlvmgtRsGdidpailvylaeteglsadeventlnkksGllglsglssDlreve 286
                     +lg+p+++ln+i+ HlGnGaS +av++G+sv tsmg+ pLeGlvmgtRsGd+dp+i+++l +++g+ +de++++ln +sGllgl g+ +D+rev+
      KIR63196.1 171 LLGRPYDELNTITLHLGNGASACAVQGGRSVATSMGMSPLEGLVMGTRSGDLDPTIVFHLRREAGMGVDEIDDLLNHRSGLLGLAGV-NDMREVL 264
                     **************************************************************************************6.5****** PP

  Acetate_kinase 287 daaeegdeeaelalkvyvhrlakyigeyaavlegkvDaivFTgGigenaalvrelvlkalevlglevdkeknknrsGedelisteqskvkvivvp 381
                     ++ ++gd  a la++vy  r+  y+g+y a l g+vDa+ FT+G+ge aa vr+ +l++le lg++vd+++n   sG++ +is + ++v v+vv 
      KIR63196.1 265 ARRAAGDPAAALAFDVYTRRITGYVGAYYALL-GRVDAVTFTAGVGEHAAPVRAAALAGLERLGIAVDPARND-GSGDR-VISPAGAEVAVCVVG 356
                     ********************************.8**************************************6.88888.*************** PP

  Acetate_kinase 382 tnEelaiaq 390
                     t+Ee  ia+
      KIR63196.1 357 TDEEREIAR 365
                     ****99985 PP

>> FAO_M  FAD dependent oxidoreductase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.5   2.6e-06     0.015      10      39 ..     148     177 ..     142     180 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.6e-06
       FAO_M  10 evDirRFgdlhnnreylrervaesygkvYs 39 
                  +DirR+g + ++ +y+  r+ae +g+ Y+
  KIR63196.1 148 RYDIRRYGFHGTSHAYVSRRTAELLGRPYD 177
                 58******999****************997 PP

>> HCV_NS2  Hepatitis C virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     4e-05      0.24     139     183 ..     308     353 ..     260     356 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4e-05
     HCV_NS2 139 lYdHlgplsdwaaegLrdlavAlEPvvfspmekkiir.wgadtlaC 183
                 + +H++p++ +a +gL+ l++A++P        ++i   ga+++ C
  KIR63196.1 308 VGEHAAPVRAAALAGLERLGIAVDPARNDGSGDRVISpAGAEVAVC 353
                 569**********************999999888887357888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2566.42
//
Query:       KIR63197.1  [L=689]
Description: phosphate acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.5e-126  420.5   0.0   5.9e-126  420.1   0.0    1.1  1  PTA_PTB   Phosphate acetyl/butaryl transferase
    1.9e-24   85.5   0.3    5.2e-24   84.1   0.3    1.8  1  DRTGG     DRTGG domain
    6.8e-15   55.4   0.0    1.3e-14   54.4   0.0    1.5  1  AAA_26    AAA domain
  ------ inclusion threshold ------
      0.029   14.4   0.1       0.12   12.5   0.1    2.0  2  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain


Domain annotation for each model (and alignments):
>> PTA_PTB  Phosphate acetyl/butaryl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  420.1   0.0  1.3e-129  5.9e-126       2     319 .]     364     680 ..     363     680 .. 0.99

  Alignments for each domain:
  == domain 1  score: 420.1 bits;  conditional E-value: 1.3e-129
                 HHHHHHHHHCTS--EEEES-TTSHHHHHHHHHHHHTTSSEEEEES-HHHHHHHHHHCTB--TT-EEE-TTT-CCHHHHHHHHHHHCCCC.S-HCCHHHH CS
     PTA_PTB   2 flerivekakkekkrivlpegedervlkAakelleegiadviLigdeaeikakaleldldlsgieivdpetsekleeyadelyelrkrkgvtieearev 100
                 f++ ++ +a+++ +r vlpeg +er+l+Aa+ ll +g+ad++L+g + +i +++ el++d+sg+ +vdp+ts+  +e+a+ +++lr ++g+t e a+++
  KIR63197.1 364 FEYDLIDRARSNRRRLVLPEGAEERILRAAEILLRRGVADLTLLGRPDDIARRTRELGVDISGAAVVDPATSPWRDEFAEAYAKLRAHRGMTAELAHDI 462
                 788999********************************************************************************************* PP

                 TTSHHHHHHHHHHTTSSSEEEE-TTS-HHHHHHHHHHCT-B-TT----EEEEEEEETTEEEEEESSSS-SS--HHHHHHHHHHHHHHHHHCCSS--EEE CS
     PTA_PTB 101 vrdatyfaamlvklgeaDglvsGavnttadtlrpalqiiktkpgvklvSsvfimlledrlllfaDcavnvnPtaeelaeialesaktakalgeeeprvA 199
                 v +++yf++m+v++g+aDg+vsGa++tta t+rpa++ii t pgv+++Ssvf+mll dr+l+++Dcavn++P+a +la+ia++sa+ta+++g +eprvA
  KIR63197.1 463 VAQPNYFGTMMVHTGHADGMVSGATHTTAATIRPAFEIIRTVPGVSVASSVFFMLLADRVLVYGDCAVNPDPDAAQLADIAISSADTAARFG-IEPRVA 560
                 ********************************************************************************************.****** PP

                 EE-SSSTTSS-SHHHHHHHHHHHHHHHH-TTSEEEEEE-HHHHH-HHHHHHH-TTSTTTT--SEEE-SSHHHHHHHHHHHHHCCTEEEEEEEEESBSS- CS
     PTA_PTB 200 lLSyStkgsakgesvekvrealkivkekapdlvvdGelqlDaAlseevaekkapesevaGkAnvlvfPdLeagnigykivqrlakaeaiGPilqGlakP 298
                 +LSySt  s+ g++vekv++a+++v+e++p+l v+G++q+DaA++++va++k+p+s vaG+A+v++fPdL++gn++yk+vqr a+a a+GP++qGl+ P
  KIR63197.1 561 MLSYSTGDSGAGADVEKVAAATRLVRERRPELLVEGPIQYDAAIDPHVAATKLPDSAVAGRATVFIFPDLNTGNNTYKAVQRSAGAVAVGPVMQGLRCP 659
                 *************************************************************************************************** PP

                 EEE--TT--HHHHHHHHHHHH CS
     PTA_PTB 299 vndlSrgasvedivnvaaita 319
                 vndlSrga+v divn++aita
  KIR63197.1 660 VNDLSRGATVPDIVNTVAITA 680
                 *******************97 PP

>> DRTGG  DRTGG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.3   1.2e-27   5.2e-24       1     101 [.     206     315 ..     206     319 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 1.2e-27
                 HHHHHTT-EEEE--..SS--.E-EEEE-SS-HHHHHHHHHTSEEEEEETT-HHHHHHHTT-T......EEEEEEETT----HHHHHHHHHHT..--EEE CS
       DRTGG   1 eiaealgaevlnggeeelrr.vekvvvgamsvenmlerlkegdlvivpGDRediqlaaleag......iaalilTgglepseevlklaeeag..lpvls 90 
                 e+a alga++l+g+++ l r v ++vvga +v+ +l++l+eg+lvi+p+DR+d+++aa +a+      +a+l+lT g +p+++ ++l+e+++  l+vls
  KIR63197.1 206 EVAAALGATLLAGDDAALGRdVLDYVVGAAHVPTLLDHLTEGALVITPADRADLLVAASAAHvagqvsVAGLVLTLGERPDPRAMRLVEGLNtgLAVLS 304
                 6999*********************************************************************************************** PP

                 -SS-HHHHHHH CS
       DRTGG  91 veldtfttakr 101
                 v +d+++t+++
  KIR63197.1 305 VGSDSYDTVAA 315
                 ********976 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0     3e-18   1.3e-14       1     173 [.       3     204 ..       3     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 3e-18
      AAA_26   1 rtifvtgtdtgvGKTvvslgLvralkrkgvkvgyfKPiqtgieededselikellgldqtyelpeplalsaplspelaarqegedid.lekivkelekd 98 
                 r++++t+++ g GK++++lgL++ l+r+  ++g f+P+  g+  d+  +l++e ++++ + +++    ++++ +  + +r+e+   + +e++ +++e +
  KIR63197.1   3 RSVYLTSVGSGGGKSTIALGLAELLSRQVERIGAFRPLVPGRGPDQILALLSERYRIEIPVDELHGCSYAEAGALVADGRREELISRiVERY-RDVERR 100
                 789****************************************************************9997655555555554444445555.99**** PP

      AAA_26  99 adivvVEGagglg....vpiteellnadiaknlgapvilVargglgtinqllltiealr....qknvrvlGvilNkvrnp....e.............. 171
                 +  vvV G+++ +     +  e ++na++a++ g+ v+ V+ g  + ++++++++  +     + +  vl+vi+N+v+ p    e              
  KIR63197.1 101 CPAVVVVGSDFADggdgAGPRELAFNARLATEFGSVVVPVVDGFGQQPEAIAAAARGAYhdlvDLGATVLAVIANRVPGPmtlpElpvpayaipevpav 199
                 *********988733124456669*******************999999998877766524445699**********9995444144444444444444 PP

      AAA_26 172 ...nv 173
                    +v
  KIR63197.1 200 sapTV 204
                 44444 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.6e-05      0.12       3      30 ..       7      34 ..       5      38 .. 0.86
   2 ?   -3.1   0.0       1.7   7.8e+03      73      87 ..     162     180 ..     143     186 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.6e-05
                EEESSTTSSHHHHHHHHHHHHHHTT--E CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  3 iastkGGvGKTtlaanLaralarrglrV 30
                ++s  +G GK+t+a++La +l+r+  r+
  KIR63197.1  7 LTSVGSGGGKSTIALGLAELLSRQVERI 34
                57889*****************986665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.7
                 H......EEEEEEEEESS. CS
                 x....xxxxxxxxxxxxxx RF
        CbiA  73 l....lkiagvvlnrvdge 87 
                 l     +++ v++nrv g+
  KIR63197.1 162 LvdlgATVLAVIANRVPGP 180
                 3444567888999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4916.24
//
Query:       KIR63198.1  [L=59]
Description: hypothetical protein TK50_20225 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 441.43
//
Query:       KIR63199.1  [L=1258]
Description: alpha-ketoglutarate decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-57  194.5   0.0    4.9e-57  193.2   0.0    1.6  2  E1_dh            Dehydrogenase E1 component
    1.5e-54  184.3   0.0    3.6e-54  183.1   0.0    1.7  1  Transket_pyr     Transketolase, pyrimidine binding domain
    6.4e-54  182.9   0.0    1.1e-53  182.0   0.0    1.3  1  2-oxoacid_dh     2-oxoacid dehydrogenases acyltransferase (ca
      4e-48  163.0   0.0    7.5e-48  162.1   0.0    1.5  1  OxoGdeHyase_C    2-oxoglutarate dehydrogenase C-terminal
    2.7e-12   46.1   0.6    5.1e-12   45.2   0.6    1.5  1  2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus


Domain annotation for each model (and alignments):
>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.68   2.4e+03     224     235 ..     423     434 ..     419     442 .. 0.82
   2 !  193.2   0.0   1.4e-60   4.9e-57       3     294 ..     530     850 ..     528     858 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.68
                 E--SS-SSTTSH CS
       E1_dh 224 tYRyggHsesDd 235
                  YR+ gH + D 
  KIR63199.1 423 AYRVRGHLMADT 434
                 699999999984 PP

  == domain 2  score: 193.2 bits;  conditional E-value: 1.4e-60
                 HHHHHHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TT..SEEEES.S--HHHHHHTT--..HHHHHHHHTT-T.....TTSSGTT-..-E.. CS
       E1_dh   3 lvllrrvedaldalykrkkrigfyhlsagqealkvgiaaaleke..Dliite.YReagvllargls..leeilaeltgkv.....kgkggsrh.elm.. 88 
                 l +   +e +l+ +y  +kr++++  + +++ l+ + + + e +  +++i + +R++ ++la+ +    e+i++e+ g+      +g+g++++  ++  
  KIR63199.1 530 LNAAEAFETFLQTKYVGQKRFSLEGGESLIPLLGEVLESSAEAGldEVVIGMaHRGRLNVLANIVGkpYEKIFSEFEGHLdprstQGSGDVKYhLGQng 628
                 566778999*****************************999999945555446*********9776669****************67777766444411 PP

                 .......BTT..BEEE-SSTTTH..HHHHHHHHHHHH......HHTS---EEEEEEGGG.TT-HHHHHHHHHHHHTT--E...EEEEEEESEETTEEHH CS
       E1_dh  89 .....yaekesrilggngivgaq..vplvaGialaak......iegkkevailliGDgA.anqGdvyealnlaalwklpv...ifvveNNkygisTeae 170
                      ++e  +++    ++++++   p+++Gi++a++       eg +++ ++++GD+A a+qG v+e+lnl++l ++ +   ++vv+NN+ g++T++e
  KIR63199.1 629 kfttpDGEHSVKVSVVANPSHLEavDPVLEGIVRAKQdridlkLEGYTVLPLAVHGDAAfAGQGVVAETLNLSQLRGYRTggtVHVVVNNQVGFTTAPE 727
                 111112333344444444444444499999******9*****9************************************99****************** PP

                 HH-S---GGG..TTTTS-EEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS- CS
       E1_dh 171 kasaskeladrargvgipglrVdgnDplavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvs 269
                 ++++s + +d+ar  ++p+l+V+g+Dp+av  +++ A e++++++++++i++v+YR+ gH+e Ddps    +++++ +++k+ + + + e L+ +g ++
  KIR63199.1 728 HSRSSLYSTDVARMIEAPILHVNGDDPEAVVRVARLAFEYRQAFNKDVVIDMVCYRRRGHNEGDDPSMSN-PQMYKIIDSKRSVRKLYTEELIGRGDIT 825
                 **********************************************************************.**************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHS CS
       E1_dh 270 eeelkeiekevrkeveeavkkaesk 294
                  e  +e+ + ++++ e  +k   ++
  KIR63199.1 826 VEDAEELLRDYQAQLERVFKATRDA 850
                 ***********99988766654443 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.1   0.0     1e-57   3.6e-54       3     178 .]     915    1111 ..     913    1111 .. 0.98

  Alignments for each domain:
  == domain 1  score: 183.1 bits;  conditional E-value: 1e-57
                    EEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT..................TEGEEE--S-HHHHHHHHHHHHHHCT.TEEEEE CS
  Transket_pyr    3 iawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg..................egrvidsgisEqavlgfavGaalagp.llvive 78  
                    i+w  +e  a+++ll+++  v+l g+D+++gtf +r++++ d                    ++ v+ds +sE+a++gf++G+++++  +lv +e
    KIR63199.1  915 IDWGYGEIIAFGALLHDGVTVRLAGQDSRRGTFVQRHASVVDARtgddylplksltadgersRFFVHDSLLSEYAAMGFEYGYSVENVnALVCWE 1009
                    89999999***********************************9****************99999****************************** PP

                    EEEHHHHGGGHHGGHHHHHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTT..EEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE- CS
  Transket_pyr   79 aqFgdFangAqiyadqairsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipg..lkvvrPsdpaetkhllrrairredrkPvvlrlp 171 
                    aqFgdF+ngAq ++d++i+sge k+++++ v+++lp+g +++Gp h s ++e+fl+l+++  ++v++P++pa+++hllrr++ +++rkP+v+++p
    KIR63199.1 1010 AQFGDFVNGAQSVIDEFISSGEVKWGQRSAVTLLLPHGHEGQGPDHTSGRPERFLQLCAEdnMRVAMPTTPANYFHLLRRQALSPKRKPLVVFTP 1104
                    **********************************************************9888********************************* PP

                    SSEEC.T CS
  Transket_pyr  172 ksllrhk 178 
                    ksllrhk
    KIR63199.1 1105 KSLLRHK 1111
                    *****85 PP

>> 2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.0   0.0   3.2e-57   1.1e-53       5     225 ..     144     376 ..     141     380 .. 0.94

  Alignments for each domain:
  == domain 1  score: 182.0 bits;  conditional E-value: 3.2e-57
                   XXXXXXXXXXXXXXXXXXXX.XXXEEEEEEEEE-HHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHH-GGGG-EE.EES..EEEE--SS--E CS
  2-oxoacid_dh   5 ervplsgirkaiakrlteskqeiphftlsdevdvtallelrkelkekeakeekakltlldflikavalAlkefPelnasvdeee..keivvkkhvni 99 
                   ++ pl+g+ + i++++ +s+ ++p++t ++ v ++ l++ r  +++++a+ +  k+++++++ +a+++Al e+Pe+n s+ e +  +++v+++hvn+
    KIR63199.1 144 QTTPLRGVAAKIVQNMDASL-SVPTATSVRAVPAKLLVDNRIVINNHLARGRGGKVSFTHLIGYAMVRALVEHPEMNNSFAEVDgkPAMVRPEHVNL 239
                   678*****************.***************************97777***************************54444479********* PP

                   EEE----.....----EEEE--GGG--HHHHHHHHHHHHHHHTTT---GGGTSS-SEEEE---------------TT-SEEEEE---.B--TTSTT- CS
  2-oxoacid_dh 100 GvAvatp.....rGLlvPviknadkkslleiakelkelaekaregklkpedleggtftisNlGmlGvtsftPiinppqvaIlgvgrikerpvvkege 191
                   G+A+++      r L+vP+ik ++++++ ++ +++++++++ar ++l+ ed++g t++++N G++G+ ++ P ++ +q+aI+gvg++ e p+  +g 
    KIR63199.1 240 GIAIDLAkpdgsRNLVVPSIKGCETMDFRQFWQAYEDVVRRARRNELTMEDYSGTTISLTNPGGIGTVHSIPRLMTGQSAIIGVGAM-EYPAPYQGM 335
                   ****9877755555*************************************************************************.888887777 PP

                   .......HT---EEEEEEEEETTT--HHHHHHHHHHHHHTT CS
  2-oxoacid_dh 192 .......lvvrkvmtlslsaDHRvidGaeaarFlntlkkll 225
                          l+v k++tl+ ++DHR+i+Ga+  +Fl+ +++ll
    KIR63199.1 336 seatlaeLAVSKIITLTSTYDHRIIQGAQSGEFLKVMHELL 376
                   799***********************************998 PP

>> OxoGdeHyase_C  2-oxoglutarate dehydrogenase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.1   0.0   2.1e-51   7.5e-48       2     152 .]    1115    1255 ..    1114    1255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 162.1 bits;  conditional E-value: 2.1e-51
  OxoGdeHyase_C    2 SsleelaegtsFqrvledeeeealkepekvkrvvlcsGkvyydLlkerekkekekdvaivriEqlyPfpfeelkeelekYpnakelvWvQeEpk 95  
                     S +e++++g +F +vl d+++     +e+vkrv+lcsGkvyydL+++r++++  +d+aivr+EqlyP+p+ee++++l++Ypna+++ WvQeEp+
     KIR63199.1 1115 SGVEDFTTG-TFAPVLADTAA---PPAEQVKRVLLCSGKVYYDLFQARAERGV-TDTAIVRMEQLYPLPVEEIRAALAQYPNAEDFAWVQEEPA 1203
                     889******.9********99...469**********************8865.**************************************** PP

  OxoGdeHyase_C   96 NqGawsfveprletvlkekkkkkkklryvgreasaspAtGskkvhkkeqealleeaf 152 
                     NqGawsfv+ +l ++l+e      +lr+++r+a+a+pA+Gs+k+h+ eq+al+e+a+
     KIR63199.1 1204 NQGAWSFVALNLLEHLSEV-----RLRRISRPAAAAPAVGSAKMHEVEQNALIEAAL 1255
                     ****************855.....8*****************************996 PP

>> 2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.6   1.4e-15   5.1e-12       5      38 ..      15      48 ..      13      51 .. 0.93

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 1.4e-15
  2-oxogl_dehyd_N  5 sgtnaaYiEelYeayleDPsSVdesWrayFknle 38
                     +g n + +Ee+Y++yl+DPsSVd++W+++F+++ 
       KIR63199.1 15 FGPNEWLVEEMYQRYLADPSSVDSAWHDFFADYR 48
                     699***************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       805  (0.0448993); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.50
# Mc/sec: 7588.33
//
Query:       KIR63200.1  [L=274]
Description: hypothetical protein TK50_20235 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-07   29.7   9.1    9.7e-07   28.9   8.9    1.6  1  ABC2_membrane_4  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   8.9   5.4e-11   9.7e-07       1     171 [.       3     192 ..       3     200 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 5.4e-11
  ABC2_membrane_4   1 liktEflKlkrskivwllvlaallvpllallyfn.................llgktgldpaefys.lsvfgft.lllllplilgiiasylifrE 75 
                      l+++E+lK++  + +w++ l++l  pl+al++                   +++++++ +a+ ++ l+++ +t   ++  li+ +++ ++++ E
       KIR63200.1   3 LVRSELLKIRTTNTWWVFGLISL--PLWALTALInwlqtdalasgnfgdvpADQADQVTAAQSVDsLAANIYTnGQFFGLLIVMLLGIIVVTSE 94 
                      7899************9666555..6666554433457788888877776633333333333333144444441458888888889999***** PP

  ABC2_membrane_4  76 eqndtlk.nLltiPvsrtklllaKlivllllsvllmlvtflitvlfallsgf.vgfsvklvlellkkclelgllvffavlpi.ialvllkksyv 166
                      +  +t+    lt+P +rt+++ aKl++ ++l++l+ lvt+ + +++++l+   v++ ++l   +++  + l++l +++ +++ + + +l +s++
       KIR63200.1  95 FFHQTVTtTFLTVP-HRTAVMTAKLVAAAVLAMLFWLVTTGLNLVLGVLVLNsVDLGSQLGNGAVWTATALNALAYLLWSVLgVGIGVLIRSQI 187
                      99999862688***.6899*********************999888777665267887777778888888888888888877566788888877 PP

  ABC2_membrane_4 167 lplil 171
                       + + 
       KIR63200.1 188 GATVT 192
                      76664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.57
# Mc/sec: 1454.26
//
Query:       KIR63201.1  [L=313]
Description: ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.2e-26   91.0   0.0    1.3e-25   90.5   0.0    1.3  1  ABC_tran     ABC transporter
    7.2e-12   45.7   0.0    6.9e-07   29.4   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00033   21.2   0.0    0.00046   20.8   0.0    1.2  1  AAA_23       AAA domain
    0.00039   20.8   0.5      0.049   14.0   0.1    2.5  2  AAA_16       AAA ATPase domain
      0.001   19.3   0.0     0.0029   17.9   0.0    1.8  2  AAA_22       AAA domain
  ------ inclusion threshold ------
      0.013   15.2   0.1      0.048   13.4   0.1    1.9  2  AAA_29       P-loop containing region of AAA domain
      0.015   16.0   0.0      0.025   15.3   0.0    1.4  1  DUF4162      Domain of unknown function (DUF4162)
       0.02   14.6   1.5      0.033   13.9   0.9    2.0  1  AAA_30       AAA domain
       0.17   11.8   0.1       0.32   10.9   0.1    1.4  1  RsgA_GTPase  RsgA GTPase
       0.25   11.0   0.0       0.47   10.1   0.0    1.3  2  AAA_15       AAA ATPase domain
       0.26   10.9   3.2       0.92    9.1   1.2    2.1  2  SRP54        SRP54-type protein, GTPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0   8.2e-29   1.3e-25       1     137 []      30     169 ..      30     169 .. 0.93

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 8.2e-29
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.........esdeeiekals 90 
                 ++n+s+++++g++++++G+nGaGK+t l++l++l++pt G+ ++ g+   +  l+   +++g + + ++  ++ t  ++           ++++++al+
  KIR63201.1  30 VDNLSFTVEPGRVTGFLGPNGAGKTTTLRMLLNLVTPTGGTATIGGQRYAD--LTDPLRHVGAVLEASSAHKGRTGINHlrvicaaagLPKSRADEALA 126
                 589********************************************9999..9999999999999988877776444469***999999999****** PP

                 HSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  91 klglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  +gl+  ++++     + +S G+kqr+ +a+a+l +p++l+lDEp +
  KIR63201.1 127 LVGLTPAAKRKF----KGYSLGMKQRLGIAAAMLGDPRVLILDEPAN 169
                 ******999999....*****************************86 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.6e-05     0.025       1      29 [.      42      64 ..      42      84 .. 0.77
   2 !   29.4   0.0   4.2e-10   6.9e-07     237     297 ..     141     198 ..     131     204 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdv 29
                ++++ GpNg+GK++ L+ l  l      v
  KIR63201.1 42 VTGFLGPNGAGKTTTLRMLLNL------V 64
                6899*************99443......4 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 4.2e-10
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  S G+k+ l++++a+l ++   ++l++DEp ngL+P+ +r   ++lk l+ +g  v++++H
  KIR63201.1 141 YSLGMKQRLGIAAAMLGDP---RVLILDEPANGLDPEGIRWMRGFLKGLAHEGRTVLVSSH 198
                 599*************999...**************99999999997777779******** PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.8e-07   0.00046       4      39 ..      24      60 ..      23      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.8e-07
      AAA_23  4 ienfrsfrdqeidFsk.gltlItGpNGaGKTTildAi 39
                 +n+r  ++ ++  ++  +t + GpNGaGKTT l+ +
  KIR63201.1 24 YKNVRAVDNLSFTVEPgRVTGFLGPNGAGKTTTLRML 60
                5899***99999998846**************99765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1     3e-05     0.049      25      76 ..      41      85 ..      22     195 .. 0.52
   2 ?    4.8   0.0      0.02        33       7      42 ..     247     284 ..     237     306 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqal 76
                +++ + G+ G GK++ +r+ll+ ++ + g +++   +++      + l++ l
  KIR63201.1 41 RVTGFLGPNGAGKTTTLRMLLNLVTPT-GGTATIGGQRY------ADLTDPL 85
                566789***************877777.55555555555......2244444 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.02
      AAA_16   7 eeleqLlsalervrsgrpelvllsGe..sGvGKsslvr 42 
                 e +++L++   +v +g+ +++l++G+  +++GK +l+ 
  KIR63201.1 247 ELVAALRAQSATVETGEHGVLLVTGAdaPAIGKAALAA 284
                 445556666669999999*******6448999999984 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.8e-06    0.0029      11     113 ..      46     180 ..      38     204 .. 0.67
   2 ?   -3.2   0.0       5.8   9.5e+03      72      97 ..     242     269 ..     223     282 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.8e-06
      AAA_22  11 tGesGtGKTtllrrlleqldeeakaee..........................erpevvfvtlpsst.sskdllrellralglelka............ 70 
                  G+ G+GKTt+lr+ll+  +     ++                          +            + +  + lr ++ a gl++++            
  KIR63201.1  46 LGPNGAGKTTTLRMLLNLVTPTGGTATiggqryadltdplrhvgavleassahK------------GrTGINHLRVICAAAGLPKSRadealalvgltp 132
                 69****************9765555559*********99954444444444431............234444455555555555555554444444444 PP

      AAA_22  71 ..erlsseellealeqalrarav...ielliiDEaqh.lrseealeeLr 113
                   +r+ +   l + ++   a+a+   +++li+DE  + l  +e +++ r
  KIR63201.1 133 aaKRKFKGYSLGMKQRLGIAAAMlgdPRVLILDEPANgL-DPEGIRWMR 180
                 32444444444666666666666999********88888.555555554 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.8
      AAA_22  72 rlsseellealeqalrarav..iellii 97 
                 + + +el++al+ ++ +  +  +++l++
  KIR63201.1 242 TPQADELVAALRAQSATVETgeHGVLLV 269
                 5556666666666665555555555554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   2.9e-05     0.048      13      49 ..      31      67 ..      23      72 .. 0.82
   2 ?   -1.8   0.0       1.6   2.7e+03      16      30 ..     258     272 ..     253     282 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.9e-05
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllDAiqalLvpa 49
                d+ ++++++  +t + Gp+G+GK+T l  +  l +p+
  KIR63201.1 31 DNLSFTVEPGRVTGFLGPNGAGKTTTLRMLLNLVTPT 67
                6667888877799************998888888886 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.6
      AAA_29  16 tieidlkgatlltGp 30 
                 t+e  ++g+ l+tG+
  KIR63201.1 258 TVETGEHGVLLVTGA 272
                 566677789999997 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   1.6e-05     0.025      11      81 .]     234     306 ..     222     306 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.6e-05
                 -SSEEEEE.-------..---EEEE-TTS-EEEEE-------------.----EEEEEEEE---HHHHHHHHH CS
     DUF4162  11 gknrieve.adaeelleepgveeveeeggelelkledeeaanellkal.tsgveirsFeeeePsLndIFiekv 81 
                 g++r++v+  +a+el +    ++ + e+ge  + l ++++a+++ ka+ ++gve+++++ e+P L+ +F+e++
  KIR63201.1 234 GGGRVRVRtPQADELVAALRAQSATVETGEHGVLLVTGADAPAIGKAAlAAGVELHELTPERPDLERVFLELT 306
                 677888886668888888888888888888888888899*********88********************975 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.9     2e-05     0.033      14      51 ..      36      74 ..      23     240 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2e-05
      AAA_30 14 ltsgdrvavltGpAGtGKttalkalreaweaa.ggrvig 51
                + ++ rv+   Gp G+GKtt+l+ l ++++   g   ig
  KIR63201.1 36 TVEPGRVTGFLGPNGAGKTTTLRMLLNLVTPTgGTATIG 74
                5567789999***************99999884444444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1    0.0002      0.32      83     121 ..      23      62 ..      10      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0002
                  -TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  83 saktkegleelkellkd.ktsvlvGqSGvGKStLinallp 121
                  + k+ +++++l+  ++  +++ ++G+ G+GK+t + +ll+
   KIR63201.1  23 QYKNVRAVDNLSFTVEPgRVTGFLGPNGAGKTTTLRMLLN 62 
                  456667899999999988***************8888765 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00029      0.47      10      44 ..      26      61 ..      23      68 .. 0.75
   2 ?   -3.8   0.0       4.8   7.8e+03     324     364 ..     159     198 ..     157     198 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00029
      AAA_15 10 NFRslkdveidlsee.ltvliGkNnsGKSsileald 44
                N R+ ++ +  +++  +t + G+N++GK++ l++l 
  KIR63201.1 26 NVRAVDNLSFTVEPGrVTGFLGPNGAGKTTTLRMLL 61
                5566666444444446999**************995 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.8
      AAA_15 324 nvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 + +l+++EP + L p+  + +   lk la +++  v++++H
  KIR63201.1 159 PRVLILDEPANGLDPEGIRWMRGFLKGLAHEGR-TVLVSSH 198
                 668999999999999999999999999999998.7888888 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.2   0.00057      0.92       5      26 ..      44      65 ..      41      75 .. 0.81
   2 ?    1.3   0.0      0.14   2.3e+02      28      72 ..     207     251 ..     182     276 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00057
                EEEESTTSSHHHHHHHHHHHHH CS
       SRP54  5 llvGlqGaGKTttlaKLaallk 26
                 ++G++GaGKTttl  L +l++
  KIR63201.1 44 GFLGPNGAGKTTTLRMLLNLVT 65
                589**********998887765 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.14
                 TTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTSCHHHHH CS
       SRP54  28 egkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeeadpaava 72 
                     v+++a    R + veQ+     + g +v  ++ +ad+   a
  KIR63201.1 207 ADDVVIIAAGKLVRQGPVEQVLGSMAQGGGRVRVRTPQADELVAA 251
                 3556777888999******96554444443443344444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2019.07
//
Query:       KIR63202.1  [L=218]
Description: hypothetical protein TK50_20245 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1514.45
//
Query:       KIR63203.1  [L=276]
Description: hypothetical protein TK50_20260 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-07   28.8   0.0    1.4e-06   27.9   0.0    1.6  1  DUF4097   Putative adhesin


Domain annotation for each model (and alignments):
>> DUF4097  Putative adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   7.9e-11   1.4e-06     108     217 ..     118     226 ..      36     263 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 7.9e-11
     DUF4097 108 lksssGdltlsnvsaktltvksesGdvtiegseakklklqltsGdieleslsletldltsssGdltlsntkle.gsltitassGdvdlslpeekkaavd 205
                  + +sG +tl  v + t+  k  sG v++ g+ a +l l++ sG + l + +++t+ + + sG++t + + l  g++++++ sG +++ ++e++++av+
  KIR63203.1 118 ADVTSGRITLMGVRGRTA-AKIVSGPVEALGV-AGDLSLETVSGEVVLADSTAGTVRAHTVSGEITCDLDNLRgGEIQLSTISGAITVRVREDSDLAVR 214
                 566777777777777654.5777788887776.5679999***************************99888625899********************* PP

     DUF4097 206 assesGdvslpk 217
                 ++++ G ++++ 
  KIR63203.1 215 LHTTAGRITSGF 226
                 ******999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       188  (0.0104858); expected 358.6 (0.02)
Passed bias filter:                      138  (0.00769703); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1970.17
//
Query:       KIR63204.1  [L=207]
Description: PadR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-20   71.4   0.2    8.9e-20   70.4   0.2    1.5  1  PadR           Transcriptional regulator PadR-like family
     0.0029   18.2   0.0     0.0048   17.5   0.0    1.3  1  RTP            Replication terminator protein
      0.003   18.0   0.0     0.0046   17.4   0.0    1.2  1  Fez1           Fez1
  ------ inclusion threshold ------
      0.045   13.0   0.1      0.055   12.7   0.1    1.1  1  Mating_C       C-terminal domain of homeodomain 1
      0.049   13.8   0.0        1.4    9.1   0.0    2.5  2  HTH_34         Winged helix DNA-binding domain
      0.056   13.6   0.5         18    5.5   0.1    3.0  3  Mrr_N          Mrr N-terminal domain
       0.15   12.1   0.0        1.4    8.9   0.0    2.2  2  BLACT_WH       Beta-lactamase associated winged helix domain
        0.2   11.7   0.2        0.2   11.7   0.2    2.4  2  baeRF_family2  Bacterial archaeo-eukaryotic release factor fa


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.2     4e-23   8.9e-20       1      75 []      14      83 ..      14      83 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 4e-23
                HHHHHCCS-EEHHHHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHHH CS
        PadR  1 iLalleeqpsyGyeiikeleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrelae 75
                +L+ll+++p +Gye+i+ le+++ gl+++s+G++Yp L+rLe+eg v+++ +     + rk+Y +T+aGr+el++
  KIR63204.1 14 LLKLLDDGPKHGYELIRLLEDRFLGLYAPSAGTIYPRLQRLEAEGRVTHTAA-----GGRKVYDITEAGRAELRQ 83
                799***********************************************77.....48*************985 PP

>> RTP  Replication terminator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.1e-06    0.0048      10      64 ..      10      63 ..       4      86 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.1e-06
                HHHHHHHHHHTT-EBCTCHHHHHHHHHTTTT----HHHHHHHHHHHHHTTSEEEE CS
         RTP 10 lklylitlvekkklyglklldelkkeFkelgykPnhseiyralhelvedgilkrr 64
                l+lyl++l++  +++g++l+  l ++F  l y P+  +iy  l+ l  +g ++++
  KIR63204.1 10 LRLYLLKLLDDGPKHGYELIRLLEDRFLGL-YAPSAGTIYPRLQRLEAEGRVTHT 63
                79************************9654.*****************9998876 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.1e-06    0.0046       4      58 ..      80     135 ..      77     141 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.1e-06
        Fez1   4 evcQksGEislLKqQLkdsqaevtqklseiv.alkaqlrelrakleekeeeikele 58 
                 e+ Q++GE++ L + +  s a++++ ++ei  ++++++r+l+ +l+e  +++++++
  KIR63204.1  80 ELRQRAGELAALESDISSSVADLSALAGEIRsEVRGSVRDLKRELREATRRTRQFR 135
                 889***************************6369*************999988776 PP

>> Mating_C  C-terminal domain of homeodomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   2.5e-05     0.055      25      96 ..     103     176 ..      82     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.5e-05
    Mating_C  25 skLAvkLDvavkDltpelkeqlksekkrkrqeerakrkaaaYPsPErs..Passaeaalspsvsvveltlrsns 96 
                 s LA  + + v+    +lk++l++  +r rq  r+  +aa+ P P rs  P+ s+   ++  + +  +t++ + 
  KIR63204.1 103 SALAGEIRSEVRGSVRDLKRELREATRRTRQFRRTPWEAAPPPGPARSatPTGSSPLLAELDDRLAAFTVEVDA 176
                 899999*****************************************955666666666666777777776655 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00065       1.4      27      77 ..      43      89 ..      39      92 .. 0.82
   2 ?    2.1   0.0     0.096   2.2e+02       8      32 ..     176     200 ..     166     207 .] 0.81

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00065
      HTH_34 27 tdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGreafkkyvkaLk 77
                ++g ++  l+ Le+ g ++ + +        ++ iT++Gr++  +   +L 
  KIR63204.1 43 SAGTIYPRLQRLEAEGRVTHTAAGGR----KVYDITEAGRAELRQRAGELA 89
                68999999999999999987665444....5**********9998777765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.096
      HTH_34   8 yLasvdeadfvelkealeatdgnLs 32 
                  L  + + d v+l++a+++ dg+L 
  KIR63204.1 176 ALTRAGRLDDVQLRAAIRVLDGALD 200
                 57778888999***********985 PP

>> Mrr_N  Mrr N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.016        36       4      33 ..      10      39 ..       8      44 .. 0.89
   2 ?    5.5   0.1    0.0081        18      67      86 ..      60      82 ..      50      83 .. 0.72
   3 ?   -0.7   0.0      0.71   1.6e+03      22      45 ..      94     117 ..      88     137 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.016
       Mrr_N  4 lmlplLealadgsehrlkeirervaerf.gl 33
                l l lL+ l+dg  h   e+++ +++rf gl
  KIR63204.1 10 LRLYLLKLLDDGPKHG-YELIRLLEDRFlGL 39
                67899**********9.*********99665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0081
       Mrr_N 67 lespk...rgvwkiTekGrevlk 86
                ++ ++   r v+ iTe+Gr+ l+
  KIR63204.1 60 VTHTAaggRKVYDITEAGRAELR 82
                5555555599*********9876 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.71
       Mrr_N  22 eirervaerfglseeeraellpsg 45 
                 +i + va+   l  e r+e+  s 
  KIR63204.1  94 DISSSVADLSALAGEIRSEVRGSV 117
                 566666666666666666665443 PP

>> BLACT_WH  Beta-lactamase associated winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.35   7.8e+02      25      36 ..      10      21 ..       7      22 .. 0.87
   2 ?    8.9   0.0   0.00064       1.4      25      42 ..      47      64 ..      39      68 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.35
    BLACT_WH 25 vlahLeKLeeeG 36
                +++ L KL ++G
  KIR63204.1 10 LRLYLLKLLDDG 21
                6789******98 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00064
    BLACT_WH 25 vlahLeKLeeeGkVkreg 42
                ++  L++Le+eG+V ++ 
  KIR63204.1 47 IYPRLQRLEAEGRVTHTA 64
                56669*********9976 PP

>> baeRF_family2  Bacterial archaeo-eukaryotic release factor family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   3.6      0.23   5.2e+02      54     142 ..      79     127 ..      50     140 .. 0.49
   2 ?   11.7   0.2   9.1e-05       0.2      91     125 ..     159     193 ..     154     200 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.23
  baeRF_family2  54 eswerNaeavAeevdrlvresgaelVvlaGDvrarsllrdeLpervrelvvevegggraagadrealaeevaealaerrarrreevler 142
                     + ++ a + A+ +++ + +s a+l  laG++r+                                       ++++ +++ ++e+ e 
     KIR63204.1  79 AELRQRAGELAA-LESDISSSVADLSALAGEIRS---------------------------------------EVRGSVRDLKRELREA 127
                    444444444442.333344445555555555553.......................................3333333333333222 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 9.1e-05
  baeRF_family2  91 lrdeLpervrelvvevegggraagadrealaeeva 125
                    l +eL +r+++ +vev++ +ra + d+ +l+++++
     KIR63204.1 159 LLAELDDRLAAFTVEVDALTRAGRLDDVQLRAAIR 193
                    889****************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1434.17
//
Query:       KIR63205.1  [L=519]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-23   81.5   0.0    1.2e-22   80.6   0.0    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    1.1e-18   67.0   1.1    1.1e-18   67.0   1.1    2.0  2  HisKA        His Kinase A (phospho-acceptor) domain
    1.6e-08   34.8   6.4    2.6e-08   34.1   2.2    3.5  2  HAMP         HAMP domain
    3.5e-05   23.8   0.7    0.00022   21.2   0.1    2.5  2  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.028   14.2   0.0      0.052   13.4   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
        1.3    7.5   3.6          2    6.9   3.6    1.2  1  DUF3138      Protein of unknown function (DUF3138)


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   3.9e-26   1.2e-22       1     110 [.     395     509 ..     395     511 .. 0.87

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 3.9e-26
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE.TEEEEEEEESSSSSTTHHHTGTCSTTCH...HCSTCHT..S.TSSSHHHHHHHHHHHHTTTEE CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikase.ddlvisveDnGiGipkedlkklfekfsq...ddstkrg..g.ggtGlGlsivkklvelmgGei 92 
                 gd  rLrq+i nl++Na+ +++++ ++++++++++ +  v++v D+G+G+++e+ +++fe+f++   +  ++r+  g   tGlGl+iv +lv  ++G++
  KIR63205.1 395 GDDARLRQVIGNLMTNALTHTPPDASVTLRLRTESgNLAVVEVADTGPGLSPEQAERVFERFYRadaA--RTRRagGmTSTGLGLAIVAALVAAHHGTV 491
                 6899****************889999999999644578888***********************9642..333322338899********9999***** PP

                 EEEEETTTEEEEEEEEES CS
   HATPase_c  93 wvesepgrGttftftlpl 110
                 +v ++pg+G tf++++pl
  KIR63205.1 492 EVGETPGGGATFRVRVPL 509
                 ***************997 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.7   5.1e+03      54      65 ..     234     243 ..     226     278 .. 0.62
   2 !   67.0   1.1   3.8e-22   1.1e-18       2      66 ..     284     349 ..     283     350 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.7
                 HHHHHHHHCCHH CS
       HisKA  54 lvedlLdlsrie 65 
                  ++++  l++ie
  KIR63205.1 234 ALNTM--LAQIE 243
                 44444..33333 PP

  == domain 2  score: 67.0 bits;  conditional E-value: 3.8e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC...T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkre.gklteelkeyletiesearrldhlvedlLdlsriea 66 
                 +++f+a+ +HELrtPL++i+g+ae+ +   ++++ee + +l++ie+ea r+  lvedlL l+r++ 
  KIR63205.1 284 MRQFVADASHELRTPLTTIRGFAELYRQGaARAPEETAGLLRRIEDEAARMGLLVEDLLLLARLDR 349
                 79***********************988898999*****************************996 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   2.2   8.6e-12   2.6e-08       2      52 ..     187     243 ..     186     244 .. 0.89
   2 ?   -2.4   0.1       2.2   6.7e+03      10      21 ..     324     335 ..     324     364 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 8.6e-12
                 HHHTTHHHHHHHHHHHHHHTTTBTSST......CCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtr......lpvsgrDEiGeLarafNaMldrLr 52 
                 ++r+ l+PL +++r+a++ia Gdl+ r       ++ +  E+G+L ra+N+Ml +++
  KIR63205.1 187 IVRTSLKPLVEIERTAAAIAGGDLTRRvpdpeeGEPCPTSELGRLSRALNTMLAQIE 243
                 78*************************8887655555789*************9987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHT CS
        HAMP  10 LrrLaraarria 21 
                 Lrr+++ a+r++
  KIR63205.1 324 LRRIEDEAARMG 335
                 788888888886 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       0.3     9e+02      35      82 ..     250     300 ..     228     324 .. 0.73
   2 !   21.2   0.1   7.5e-08   0.00022      31     111 ..     399     486 ..     367     503 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.3
  HATPase_c_2  35 aveEactNavehayleap..egpvevrlesdeealtvevaDsGpg.fdpet 82 
                  a++E+ ++  e++ ++a    +  e r++++ee+++  vaD  +   +p t
   KIR63205.1 250 AASEIAARSAEAGARDAAaaAQASEARARRSEERMRQFVADASHElRTPLT 300
                  778888888888888777433556777778888888777777666555555 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 7.5e-08
  HATPase_c_2  31 eirlaveEactNavehayleapegpvevrlesdeea.ltvevaDsGpgfdpetlpdpteeep.........keslkegGrGlalikglvDe 111
                  ++r +++ ++tNa +h  ++   ++v++rl+ +++   +vevaD Gpg  pe++++  e  +         ++   + G+Gla++++lv  
   KIR63205.1 399 RLRQVIGNLMTNALTHTPPD---ASVTLRLRTESGNlAVVEVADTGPGLSPEQAERVFERFYradaartrrAGGMTSTGLGLAIVAALVAA 486
                  56777888899999999985...669999989888845669**********98877655444999*****9999*************9965 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.7e-05     0.052      10      82 ..     407     483 ..     398     499 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.7e-05
  HATPase_c_3  10 lvdNsld..AdaenvkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakrkstslGkkGiGlkl.Asl 82 
                  l  N+l+      +v++ + ++ g+ + + + D G G+s+e+ ++++ r+ + +  ++r +  + + G+Gl   A+l
   KIR63205.1 407 LMTNALThtPPDASVTLRLRTESGNLAVVEVADTGPGLSPEQAERVFeRFYRADAARTRRAGGMTSTGLGLAIvAAL 483
                  55565552222345888999999999*******************996799999999999999*******6431444 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.6   0.00068         2      27      94 ..     228     292 ..     218     301 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00068
     DUF3138  27 ikalkaqltalqrqvkelraalaaakaaaGgkissqkaaaaaaaaaeaaaalteddvaqlkeqianae 94 
                 + +l   l+++ +q+++  +a aa++ aa +  +  + aaaaa+a+e   a ++   +++++ +a+a+
  KIR63205.1 228 LGRLSRALNTMLAQIEAAFTARAASEIAARSAEAGARDAAAAAQASE---ARARRSEERMRQFVADAS 292
                 55666667777777776666666655555444444444555555555...445556667777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 3382.21
//
Query:       KIR63206.1  [L=519]
Description: peptidase S1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-33  116.4   5.9    2.1e-33  116.4   5.9    2.1  2  Trypsin_2      Trypsin-like peptidase domain
    4.6e-22   78.1   0.9    4.6e-22   78.1   0.9    2.2  3  PDZ_2          PDZ domain
    6.3e-12   45.8   3.1    1.2e-11   44.9   3.1    1.5  1  Trypsin        Trypsin
    5.1e-10   39.0   2.0      6e-09   35.6   0.9    3.1  2  PDZ_6          PDZ domain
    1.3e-07   31.9   1.1    7.2e-07   29.5   0.6    2.5  2  PDZ            PDZ domain
     0.0004   19.2   4.2      0.078   11.6   0.2    2.1  2  Peptidase_S46  Peptidase S46


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   5.9     7e-37   2.1e-33       1     150 []     246     394 ..     246     394 .. 0.98
   2 ?   -3.7   0.1         6   1.8e+04     124     142 ..     434     452 ..     417     458 .. 0.66

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 7e-37
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggeks 99 
                 GsG+++++dg++lTn+Hvv+sa+g++v       ++++adg+  +a++v++dp +DlA++k   +  +gl ++++g+s+a ++g++v ++G plg ++ 
  KIR63206.1 246 GSGVILSEDGYVLTNNHVVASASGKTV-------KVVFADGKSADAEIVGTDPKTDLAVVKA--GGVSGLKAATFGDSDAMQVGDQVLALGSPLGLQG- 334
                 9**************************.......9*****************999*******..**********************************. PP

   Trypsin_2 100 gsvssGivsgvve......sesaasgegesfl....qtdaatspGsSGGplfdsdGrvvGl 150
                  sv+sGi+s+ ++      ++++++++g s++    qtda+++pG+SGG+l++++G+v+G+
  KIR63206.1 335 -SVTSGIISARDRtiqageGQQQDPRQGVSSIagllQTDAPINPGNSGGALVNTRGEVIGI 394
                 .9***************9988888888888889999************************8 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6
   Trypsin_2 124 flqtdaatspGsSGGplfd 142
                 +    +++sp   GG+++ 
  KIR63206.1 434 HPSLGVSVSPAENGGAVVA 452
                 4445556666777887774 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         3     9e+03      60      73 ..     267     279 ..     254     297 .. 0.61
   2 ?   -2.4   0.0       2.1   6.4e+03      32      42 ..     317     327 ..     304     328 .. 0.80
   3 !   78.1   0.9   1.5e-25   4.6e-22       1      82 []     435     515 ..     435     515 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3
                 -TT-EEEEEEEETT CS
       PDZ_2  60 kpGdtVkltvlRdg 73 
                   G+tVk+ +  dg
  KIR63206.1 267 ASGKTVKVVF-ADG 279
                 4455555532.233 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.1
                 --TT-EEEEET CS
       PDZ_2  32 lkagDvilkvd 42 
                 ++ gD++l+++
  KIR63206.1 317 MQVGDQVLALG 327
                 7899*999976 PP

  == domain 3  score: 78.1 bits;  conditional E-value: 1.5e-25
                 ....XX------..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEEE- CS
       PDZ_2   1 pylGvsvsdeedtggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvevkl 82 
                 p lGvsvs+ e+ gg++v+sV++g+ a+k+gl+ gDvi+k++++++++++dl ++++++k Gd V+++++R+g  +t++v+l
  KIR63206.1 435 PSLGVSVSPAEN-GGAVVASVTPGSAAEKSGLQRGDVITKFGDTVINDSDDLVGAVQARKVGDRVEVQYQRNGSAATATVTL 515
                 68*********8.*******************************************************************97 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   3.1     4e-15   1.2e-11      15     219 ..     236     421 ..     227     423 .. 0.67

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 4e-15
                 EEEEEETTCEEEEEEEEEETT.EEEEEGGGTTT..GGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBC CS
     Trypsin  15 qvslsvksgkhlCgGslisen.wvlTAaHCvsn..asdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclp 110
                 +vs+s +sg    +G+++se+ +vlT++H+v +   + vkvv+        +g  + ++ e v    + +p+t   D+a++k        +  + +   
  KIR63206.1 236 VVSISTGSG--EGSGVILSEDgYVLTNNHVVASasGKTVKVVF-------ADG--KSADAEIV----GTDPKT---DLAVVKAGGV----SGLKAATFG 312
                 566777665..34678888877**********94333333333.......334..45556663....489999...******9998....555666666 PP

                 STTHTTSTTTEEEEEESSBSSTSSBSSBEEEEEEEEEEHH....HHHHHTTTT......STTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEE CS
     Trypsin 111 aassslpvgttclvsGwgrtkekgksdtlqevevpvvsre....tcksaykgk......vtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswg 199
                 + s+ ++vg+++l+ G +   + +    ++++ +++ +r     + +++   +           l+++a      +++G+SGG+lv+  ge++Gi+++ 
  KIR63206.1 313 D-SDAMQVGDQVLALGSPLGLQGS----VTSGIISARDRTiqagEGQQQ---DprqgvsSIAGLLQTDA-----PINPGNSGGALVNTRGEVIGINTAI 398
                 6.4457999999999999964444....444555554443200044443...13334444466677777.....8**********************99 PP

                 ..SSSSCTTS.EEEEEEGGGGHH CS
     Trypsin 200 ..kgcakgnr.pgvytkvssyld 219
                    g ++gn   g++++ ++++d
  KIR63206.1 399 atSGQSTGNIgVGFAIPSNKAKD 421
                 86666666657889999988887 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.2   6.1e+02      16      26 ..     317     327 ..     308     328 .. 0.87
   2 !   35.6   0.9     2e-12     6e-09       1      56 []     450     504 ..     450     504 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.2
       PDZ_6  16 lrvGDiilsvN 26 
                 ++vGD++l+++
  KIR63206.1 317 MQVGDQVLALG 327
                 79******975 PP

  == domain 2  score: 35.6 bits;  conditional E-value: 2e-12
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallr.gsagesvvlvvrr 56 
                 vV +V pgs A++ Gl+ GD+i++++++ +   + +d++ +++  ++g +v+++ +r
  KIR63206.1 450 VVASVTPGSAAEKSGLQRGDVITKFGDTVI--NDSDDLVGAVQaRKVGDRVEVQYQR 504
                 699***************************..***********99999999999887 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.82   2.5e+03      41      53 ..     314     326 ..     303     329 .. 0.75
   2 !   29.5   0.6   2.4e-10   7.2e-07       8      60 ..     433     481 ..     403     501 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.82
                 HHTSSTTEEEEEE CS
         PDZ  41 adglkvGDkIlsv 53 
                  d  +vGD++l+ 
  KIR63206.1 314 SDAMQVGDQVLAL 326
                 45589*****986 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 2.4e-10
                 TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTT CS
         PDZ   8 grgglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdven 60 
                 ++ +lG+s++  ++     g++v++v pg+aae++gl+ GD+I++ +++ +++
  KIR63206.1 433 SHPSLGVSVSPAENG----GAVVASVTPGSAAEKSGLQRGDVITKFGDTVIND 481
                 677899999987774....*************************988877765 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.2   2.6e-05     0.078      29      69 ..     223     266 ..     219     272 .. 0.79
   2 !    8.6   0.7   0.00021      0.62     627     651 ..     371     395 ..     360     399 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.6e-05
                    HHHS-SSS--GGG--EET...TTEE-EE-STT-EEEE-HHHHHH CS
  Peptidase_S46  29 ekladlrrsskdAvvsfl...ggCtasfVSpeGLvlTNHHCayg 69 
                    ++l ++ +s +d vvs+    g  ++ + S++G vlTN H++ +
     KIR63206.1 223 ADLPKIAASVQDSVVSIStgsGEGSGVILSEDGYVLTNNHVVAS 266
                    667777777789999985222568****************9976 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00021
                    ES----TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 627 stnDitGGNSGSPvlngkgelvGla 651
                    +++ i  GNSG +++n++ge++G++
     KIR63206.1 371 TDAPINPGNSGGALVNTRGEVIGIN 395
                    5667888****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3331.34
//
Query:       KIR63207.1  [L=371]
Description: glycosyl transferase family 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-21   75.5   0.0    5.9e-21   74.8   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    1.6e-15   57.7   0.1    4.9e-15   56.1   0.0    1.8  2  Glyco_trans_1_4  Glycosyl transferases group 1
      2e-10   41.0   8.0    2.4e-09   37.4   7.8    2.5  1  Glyco_transf_4   Glycosyltransferase Family 4
    6.6e-07   29.4   0.0    1.1e-06   28.7   0.0    1.3  1  Glyco_trans_4_2  Glycosyl transferase 4-like
    4.2e-06   27.1   0.0    8.5e-06   26.1   0.0    1.6  1  Glyco_trans_1_2  Glycosyl transferases group 1
    6.6e-06   26.6  20.6     0.0002   21.8  17.8    3.2  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
  ------ inclusion threshold ------
       0.45   10.2   1.9       0.59    9.8   0.5    1.8  2  Glyco_transf_5   Starch synthase catalytic domain


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   2.3e-24   5.9e-21      18     144 ..     189     312 ..     178     321 .. 0.94

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 2.3e-24
                      EEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES...STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESS.BSS-HH CS
  Glycos_transf_1  18 ilsvgrlekeKgvdllikafallkkqlnpnvklviaG..ngeeekelkklaeelelsdnviflgevsredleellknadifvlpsis.EgfGiv 108
                      +l ++r+++ Kg+d++i a++         + lv+aG  n++ e ++ +++ e  l d+v+++++ +re+   +l  a ++++p ++ E+fG+v
       KIR63207.1 189 VLWLARFSPDKGPDVAIGACR------AAGLPLVLAGkcNEPAERRYYEQVVEPMLDDDVTVVFNADREAALRMLVDARCLIMPIQWeEPFGMV 276
                      7889*****************......689**************************************************************** PP

                      HHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT- CS
  Glycos_transf_1 109 llEAmaaglpviasnaggpaevvkdgetGllvkpnn 144
                      +lEAma g+pv+a   g ++e+v++g tGl+++ ++
       KIR63207.1 277 ILEAMATGTPVVALRRGAVPELVRPGITGLVCDRPD 312
                      *********************************984 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.3   3.2e+03      84     115 ..     111     139 ..      53     147 .. 0.68
   2 !   56.1   0.0   1.9e-18   4.9e-15       4     126 ..     189     316 ..     186     323 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.3
                      SHHHHHHHHTT-EEEE-TGGGTTT--TTSSEE CS
  Glyco_trans_1_4  84 glkllEamaaglpvVatdvggiaevvgengll 115
                       +  l a   ++p+Vat   g +   ge g +
       KIR63207.1 111 TIGPLVAGRRAVPTVATVH-GNPV--GEYGTV 139
                      5555666667788888866.5455..666654 PP

  == domain 2  score: 56.1 bits;  conditional E-value: 1.9e-18
                      EEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---.....HHHHHHHT.T-T.TEEEE---..THHHHHHHH-SEEEE--...---SHHHH CS
  Glyco_trans_1_4   4 ilfvGrleenvkgvdllleavpllrkkdvrlvivGdgp...rpeeleelaa.gleerveftGfv..edlaellaaadvfvaPs...egfglkll 88 
                      +l++ r++ + kg d+ + a+ +     + lv++G+ +   +++ +e+ ++  l+++v+++     e   ++l +a+++++P+   e fg+++l
       KIR63207.1 189 VLWLARFS-PDKGPDVAIGACRAAG---LPLVLAGKCNepaERRYYEQVVEpMLDDDVTVVFNAdrEAALRMLVDARCLIMPIqweEPFGMVIL 278
                      78999995.55******99996666...57*****644323335666555677888877766664366899999**********988******* PP

                      HHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHH CS
  Glyco_trans_1_4  89 EamaaglpvVatdvggiaevv..gengllvppgdpealae 126
                      Eama g+pvVa + g+++e+v  g +gl+++   p++l  
       KIR63207.1 279 EAMATGTPVVALRRGAVPELVrpGITGLVCD--RPDDLPG 316
                      **************99***********9995..3444433 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   7.8   9.5e-13   2.4e-09       1     108 [.      33     133 ..      33     248 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 9.5e-13
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrl 95 
                     +GG e +v  L+ aL +rGh Vtv+  g+++ ++    +v       +  l+  l  la+l ++ +l+   ++DvvH h+ +  ++a+   r  +
      KIR63207.1  33 YGGLEQVVAGLVDALVDRGHAVTVFGAGRRHGTRAG--YVATCDDLQYDRLGESLPELAHLAHVGHLVSPADFDVVHDHTTIGPLVAG---R--R 120
                     7************************98888888888..556666666666666666777777777788888*********88886664...4..6 PP

  Glyco_transf_4  96 giplVltvHglye 108
                      +p+V+tvHg   
      KIR63207.1 121 AVPTVATVHGNPV 133
                     99********974 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   4.4e-10   1.1e-06      16     111 ..      43     133 ..      36     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 4.4e-10
  Glyco_trans_4_2  16 lakeLakrgyeVhvitpkkgakdeleaegihvhrlkvdrkg.pleylk.afklkklikkikPDvvhahyakpygllgslaarlsgvipvvlsvw 107
                      l+++L +rg+ V+v+  +  + +    + +++ +l+ dr g +l +l+ ++++  l+    +Dvvh h+++++ ++g    r++  +p+v++v+
       KIR63207.1  43 LVDALVDRGHAVTVFGAGRRH-GTRAGYVATCDDLQYDRLGeSLPELAhLAHVGHLVSPADFDVVHDHTTIGPLVAG----RRA--VPTVATVH 129
                      799**************8885.555688899*****9*9999999999799*********************98888....444..8******* PP

  Glyco_trans_4_2 108 Gldv 111
                      G  v
       KIR63207.1 130 GNPV 133
                      9766 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   3.3e-09   8.5e-06       8      91 ..     262     354 ..     244     355 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3.3e-09
  Glyco_trans_1_2   8 s........espnlrlfEaaacGafaltddaegleelftpgkevilfedleelaekirylla.npeerraiaeaarervlaehtydhraeqll 91 
                      +        e + ++++Ea+a G+++++ ++ +++el++pg ++++ + +++l  ++r++ + +p+++ a  +++   ++    y+  ++++l
       KIR63207.1 262 ClimpiqweEPFGMVILEAMATGTPVVALRRGAVPELVRPGITGLVCDRPDDLPGALREADRlDPADCVAHVAENFSTTRMAQGYEAVYRDFL 354
                      3455555546799***********************************************999999999888888877777777777777665 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8  17.8   7.8e-08    0.0002       1     111 [.      34     136 ..      34     266 .. 0.83
   2 ?   -0.5   0.2      0.58   1.5e+03      68      68 ..     267     267 ..     227     343 .. 0.58

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 7.8e-08
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgapeleedgvrvh..rlpvprrpspladlaalralrrllrqrrerpdvvhahsptaglaarlar 92 
                      gG +++va l+ aL++rGh Vtv+ ++ + g +    +g   +   l   r ++ l+ la+l+ +  l+      +dvvh h+  ++l   +a 
       KIR63207.1  34 GGLEQVVAGLVDALVDRGHAVTVFGAGRRHGTR----AGYVATcdDLQYDRLGESLPELAHLAHVGHLV--SPADFDVVHDHTTIGPL---VAG 118
                      8***********************985555555....44444322667777778899************..9***********97776...456 PP

  Glyco_trans_4_4  93 rrrgiplvvtlhglllrrg 111
                       rr +p v t+hg+ + ++
       KIR63207.1 119 -RRAVPTVATVHGNPVGEY 136
                      .7889*******6543332 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.58
  Glyco_trans_4_4  68 r 68 
                       
       KIR63207.1 267 I 267
                      1 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.5   0.00023      0.59      15      39 ..      33      57 ..      20      67 .. 0.92
   2 ?   -1.9   0.0      0.85   2.2e+03     138     170 ..     106     129 ..      87     157 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00023
  Glyco_transf_5 15 tGGLadvvgaLpkaLaklghdvrvi 39
                     GGL +vv++L  aL  +gh v+v+
      KIR63207.1 33 YGGLEQVVAGLVDALVDRGHAVTVF 57
                    6**********************97 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.85
  Glyco_transf_5 138 ahDWhtalvpallkelykerglfkkiktvftiH 170
                     +hD ht + p+++            ++tv t+H
      KIR63207.1 106 VHD-HTTIGPLVAGRRA--------VPTVATVH 129
                     455.5666666665554........88999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2669.80
//
Query:       KIR63208.1  [L=516]
Description: serine/threonine protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-39  134.2   0.0    6.8e-39  133.8   0.0    1.1  1  Pkinase         Protein kinase domain
    4.4e-28   98.3   0.0    5.5e-28   98.0   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    7.5e-05   22.8   8.0    0.00071   19.6   0.0    3.1  4  APH             Phosphotransferase enzyme family
     0.0011   17.8   0.0     0.0016   17.3   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.052   13.7   0.1         18    5.5   0.1    2.7  2  TetR_C_21       Tetracyclin repressor-like, C-terminal domain
       0.25   10.9   0.0       0.39   10.3   0.0    1.2  1  RIO1            RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.0   2.3e-42   6.8e-39       1     258 [.      14     267 ..      14     270 .. 0.89

  Alignments for each domain:
  == domain 1  score: 133.8 bits;  conditional E-value: 2.3e-42
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHHHHS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfee.....kdelylvleyveggeladllerkg 93 
                 y+ + ++G G+++++ +a+++  +++vA+K+++ + a + +  + v++E +  ++l hp++  + ++ e+     + + ++v+e++ g+el+ +l+ +g
  KIR63208.1  14 YRLIDQIGAGGMSVIWRARDEVLDRTVALKVLAPSLAADARFrDMVREEARSAAQLVHPHVTAVHDYGETlapdgSITSFVVMELLAGEELEYRLT-EG 111
                 67789*****************************999888776889999******************99999976666679**************7.79 PP

                 S--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHH CS
     Pkinase  94 slseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyel 190
                  l+  ea +i +q++e+l+  H+ gi+HrD+ p+N+++      K+ DFG+a+++    +       gt+ Y+APE l++ + ++++D++slGv+lye 
  KIR63208.1 112 PLPWPEAVEIGAQVAEALAAAHRLGIVHRDITPANVMMT-PVGAKVLDFGIATHVGAPDEdeDGGTFGTPAYVAPERLDGAPAQPATDIYSLGVLLYET 209
                 ***************************************.7789***********999886666789******************************** PP

                 HHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 191 ltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeel 258
                 ltg+ p+++++     +++l        + g  +    e   +++e+ +++ ++l+++p++R+ta+++
  KIR63208.1 210 LTGQVPYPADT-----WEQLGA-----ALEGGDEPPPLEVPGLPSEVVRICLRCLSRQPRDRPTAHQV 267
                 ********222.....233333.....2333434455566677**********************997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.0   1.8e-31   5.5e-28       3     256 ..      16     268 ..      14     271 .. 0.87

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 1.8e-31
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEE.....SSSS..EEEEEE--TTEBHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelleeakimkklkhpnivkllgvct.....keep..llivteyvkgGdLlkf 91 
                  l +++G+G  + +++++ +      + +Va+K+l  +  ++   ++++ eea+   +l hp++ +++            +   ++v+e+++g +L+  
   KIR63208.1  16 LIDQIGAGGMSVIWRARDE----VLDRTVALKVLAPSLAADArfRDMVREEARSAAQLVHPHVTAVHDYGEtlapdG--SitSFVVMELLAGEELEYR 107
                  5678999999999988877....88999******8765555433677777*************88876655335333..25589************** PP

                  HHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHH CS
  Pkinase_Tyr  92 LrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvW 189
                  L++    +l   + +++ +qvA++++  ++  +vHrd++  Nv+++    +k+ DfG+a ++    +  +++++     ++apE l+    + ++D++
   KIR63208.1 108 LTEG---PLPWPEAVEIGAQVAEALAAAHRLGIVHRDITPANVMMT-PVGAKVLDFGIATHV-GAPDEDEDGGTFGTPAYVAPERLDGAPAQPATDIY 200
                  *997...**************************************9.7889***********.777778899999999******************** PP

                  HHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-B..BTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 190 sfGvllwEiftlgespypglkneevleklkegkrlek..pekcpeelyelmkkcweedpeeRptfselv 256
                  s Gvll+E +t g+ pyp  + e++ ++l+ g + +       p+e+ ++  +c++++p++Rpt +++ 
   KIR63208.1 201 SLGVLLYETLT-GQVPYPADTWEQLGAALEGGDEPPPleVPGLPSEVVRICLRCLSRQPRDRPTAHQVA 268
                  ***********.*****************99988654114569*********************99886 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.9   2.2e-05     0.066      21     108 ..      38     135 ..      22     136 .. 0.87
   2 !   19.6   0.0   2.4e-07   0.00071     147     197 ..     120     163 ..     111     166 .. 0.79
   3 ?   -2.0   0.0      0.94   2.8e+03      24      24 ..     246     246 ..     176     291 .. 0.53
   4 ?   -3.3   0.1       2.2   6.7e+03     101     124 ..     476     499 ..     465     514 .. 0.44

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.2e-05
                 --EEEEEE-TT.S-HHHHHHHHHHHHHHHHTT-..B--B-CTTB.S-EEETTE.EEEEEE----EE-SS.....HHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  21 gryvlrrnppa.raaeeirrevallrlLakagv..pvPevlagd.tddeeigl.lfalieyvpgrsllr.....klsaaqlpellealgeflaalhqv 108
                 ++++l++ +p+  a++++r++v++ +  a++ v  +v +v++++ t + +  +  f+++e + g+ l+      +l  +++ e++++++e+laa h++
  KIR63208.1  38 RTVALKVLAPSlAADARFRDMVREEARSAAQLVhpHVTAVHDYGeTLAPDGSItSFVVMELLAGEELEYrltegPLPWPEAVEIGAQVAEALAAAHRL 135
                 6899***9***99**********999999999999999***99854444333379***********999999*99999******************97 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 2.4e-07
                 HHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 147 eleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 e+ +qv++alaa  +     +++H+D+ p N++++p + +   v+Df+ a+
  KIR63208.1 120 EIGAQVAEALAAAHR----LGIVHRDITPANVMMTPVGAK---VLDFGIAT 163
                 566667777776666....9***************88777...8***9887 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.94
                 E CS
         APH  24 v 24 
                 v
  KIR63208.1 246 V 246
                 1 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 2.2
                 HHCCHHCH.-STTTB-SHHCHTCC CS
         APH 101 flaalhqvdpaalpladflaqdle 124
                 + aa+++++   +  ++++  +++
  KIR63208.1 476 LAAAVQRARDKVAERQREGSITPA 499
                 333333333333333333333333 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.2e-07    0.0016     323     397 ..     133     199 ..     117     207 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.2e-07
  Pkinase_fungal 323 flkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhDL 397
                     +   gi+HrDi   N+++t           + D+ +a++++ ++++ +++   GT++++a e l g   ++  D+
      KIR63208.1 133 H-RLGIVHRDITPANVMMT------PVGAKVLDFGIATHVGAPDED-EDGGTFGTPAYVAPERLDGAPAQPATDI 199
                     4.679**************......6677889*********86555.5699*********999987666666665 PP

>> TetR_C_21  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0081        24      26      72 ..     102     149 ..      91     156 .. 0.74
   2 ?    5.5   0.1    0.0059        18      39      65 ..     474     500 ..     462     508 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0081
   TetR_C_21  26 arLeraeeelee.eeeraesleekvaairaaQraGtvdaswkpedllt 72 
                 ++Le++ +e++   +e+ e  ++  +a++aa r G v ++++p+++++
  KIR63208.1 102 EELEYRLTEGPLpWPEAVEIGAQVAEALAAAHRLGIVHRDITPANVMM 149
                 566666555544134455556677789******************997 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0059
   TetR_C_21  39 eeraesleekvaairaaQraGtvdasw 65 
                  + a+++++  +++++ Qr+G++++++
  KIR63208.1 474 GDLAAAVQRARDKVAERQREGSITPAY 500
                 45677889999*************986 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00013      0.39      82     157 ..      93     167 ..      87     172 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00013
                 EEEEE--EETTEEGGBHHHCG-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTEEEE--GTTEEETTS CS
        RIO1  82 vlvmefigedgvaapklkdvee.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvdedkvviIDvsQaveldh 157
                  +vme++  +++  ++l + +    ea e+ ++v e+++++  + g+vH D+   Nv+++  +  ++D++ a+++  
  KIR63208.1  93 FVVMELLAGEEL-EYRLTEGPLpWPEAVEIGAQVAEALAAAH-RLGIVHRDITPANVMMTPVGAKVLDFGIATHVGA 167
                 589999994444.46888888447799999999999777666.*******************999999987776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.52
# Mc/sec: 2998.11
//
Query:       KIR63209.1  [L=277]
Description: patatin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-28   98.9   1.1    1.1e-27   97.6   1.1    1.6  1  Patatin   Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   1.1   5.9e-32   1.1e-27       2     203 ..       9     177 ..       8     178 .. 0.92

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 5.9e-32
     Patatin   2 vlsGGGsrgafslgalkaLkkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdllirelaanlaarlsgllgkgglfdaealre 100
                 vl+GGG++ga+++g+l+aL  ++  r+d++ GtS+GA++++l+a+  + +a  d l++l+++  ++       +    a++l+++  +++l+++ +lr+
  KIR63209.1   9 VLGGGGVLGAVEVGMLRAL-FRADVRPDLVLGTSIGAVNGALVAAD-PTEAVTDRLVRLWASPEASEV-----YGDSVARQLRRFAARTHLHSPRPLRR 100
                 9******************.********************999998.666669999999999999999.....899*********************** PP

     Patatin 101 llrkvladktlkrlsarlgklpllkslftanqavpaittataatastanranglytedddddvdladavraSsafPglfppvsldgelyvDGGilsNvP 199
                 ll++ l+++t+    + ++++                                +++e+  d+++l+ av+aS+++Pgl+pp ++dg +++DGGi++ +P
  KIR63209.1 101 LLEAELGEETTFADLRVPFRC--------------------------CAAHIERAAEHWFDAGPLVPAVLASASVPGLLPPTEIDGQHFIDGGIVNSIP 173
                 ***887777766666666666..........................4889999********************************************* PP

     Patatin 200 ilaa 203
                 i aa
  KIR63209.1 174 IGAA 177
                 *987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 1701.68
//
Query:       KIR63210.1  [L=341]
Description: glycerol acyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-07   31.6   0.1    2.7e-07   30.3   0.0    1.7  2  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.5e-11   2.7e-07      12     123 ..     126     243 ..     113     253 .. 0.77
   2 ?   -2.7   0.3      0.24   4.2e+03      24      34 ..     314     324 ..     313     335 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.5e-11
  Acyltransferase  12 ekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidR..ksnaraagsleniselleegklvviFPEGtr 103
                      +++p ++++ H    D ++l ++l +  ++r+++i++k++l++ p +  l+ +l   f+    + +++  +++ +++  l  ++  viFPEG++
       KIR63210.1 126 PGRPELVLCRHAGPGDSFILIHALVNW-FHREPRIVLKESLQWDPAIDVLLNRLPNRFLAPaaDRRGSVTEQIGHLATGLDDDDAFVIFPEGGN 218
                      478899****************99444.47*******************************33333344444444455888889********99 PP

  Acyltransferase 104 sregel.....lpfkkGlvrlaaka 123
                      +  ++      +  ++Gl r+a++a
       KIR63210.1 219 FTPRRRlraiaRLRSRGLERMALRA 243
                      8886654555666778888888777 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.24
  Acyltransferase  24 sylDvlllwll 34 
                       ++D+l+ w+ 
       KIR63210.1 314 ERIDWLFDWWS 324
                      679****9993 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2313.02
//
Query:       KIR63211.1  [L=106]
Description: cytochrome C biogenesis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-29   99.5   0.0    9.1e-29   99.2   0.0    1.0  1  CutA1     CutA1 divalent ion tolerance protein


Domain annotation for each model (and alignments):
>> CutA1  CutA1 divalent ion tolerance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   5.1e-33   9.1e-29       2      99 .]       6     103 ..       5     103 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 5.1e-33
                 EEEEEESSHHHHHHHHHHHHHTTS-SEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHSSSSS-EEEEEEESEEEHHHHHHHHHH CS
       CutA1   2 lvlvtapseeeakklaralveeklaACvnilpkieSvYrWkgkieedkEvllliktreekveelekrvkelhpyevpeiialpieagseaYlkWieee 99 
                 +v++ ++s+ +a+ la a v+ +laAC+++  +++S+Y+W+ ++e+++E+ +l+kt  ++v++l+++++  hpyevpe++++++++g+++Y  W++e+
  KIR63211.1   6 VVTTVVDSRSVADVLAAAAVAGRLAACAQVGGQVDSTYWWRSAVETTTEWSVLFKTAPDRVPALVDHIRLSHPYEVPEVLVTRVDSGNPDYTVWVHEQ 103
                 7888999****************************************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 876.08
//
Query:       KIR63212.1  [L=349]
Description: delta fatty acid desaturase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-40  140.1  17.3    1.1e-40  140.1  17.3    1.8  2  FA_desaturase  Fatty acid desaturase
  ------ inclusion threshold ------
        4.8    6.5   6.6       0.19   11.0   0.8    1.5  2  ThrE           Putative threonine/serine exporter


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.0     0.014   1.3e+02     135     169 ..      31      67 ..       4      69 .. 0.49
   2 !  140.1  17.3   1.2e-44   1.1e-40       2     252 ..      61     326 ..      60     328 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.014
  FA_desaturase 135 wrllawlllllawlglwlalllllglall..lwlvpl 169
                     r  a +++++a++++++++++++ +++   +w + +
     KIR63212.1  31 DRRPAGYAVRIALTLAAFVAGWVAVPLVGdsWWQLLV 67 
                    4444455555544444444444444433354776655 PP

  == domain 2  score: 140.1 bits;  conditional E-value: 1.2e-44
  FA_desaturase   2 swlallla..lllglfllgitgslaHeaaHgalfkkrklnrwlndllgal.lglplgisysawrisHlrHHaytngpdeDpdlaplal........ 86 
                    sw+ ll+a  l++++  ++  ++l+H+a+H+++f    ++r ++++ g l   l++g sy +w + H+rHHa++n++deDpd++  al        
     KIR63212.1  61 SWWQLLVAagLAVATT-QV--AFLGHDAGHRQMF----RRRAASEAAGLLaGNLAVGLSYGWWVDKHNRHHANPNHHDEDPDVGAGALvwsyeqaa 149
                    5666664414444444.44..5************....777777777888799999****************************9999*******9 PP

  FA_desaturase  87 ......srfeglfryllrlllgllvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllfll 176
                          +r  ++ ++l+  +l+l +l++ +a v + +l r    r+ ++ r r    l+++l++++ ++++l+++l +g al++++v   l++ ++
     KIR63212.1 150 atrgigRRLARRQAWLFFPMLLLEGLALHVASVRA-LLGRTPDGRYATPMRHRAVEGLLLALHAAG-YLGLLFAVLSPGKALAFIAVHQGLWGLYM 243
                    98766666666666666666666666644444443.334444444433333333333333333333.333333333444444499*********** PP

  FA_desaturase 177 alvlnyveHyg.........gdwgerqvetsasirsaswllnlltgnlnyHieHHlfPgvpwyrLpelhrrlrellpehglpyrs 252
                     +  +  +H g          d+ + qv ts+++r  +w+++  +g+lny+ieHHlfP++p  +L+++++++r++++ehg+py +
     KIR63212.1 244 GCA-FAPNHKGmpmptadedLDFLRKQVLTSRNVR-GGWFVDVALGGLNYQIEHHLFPNMPRGNLRRARPIVRAYCAEHGVPYVE 326
                    ***.*******************************.***********************************************87 PP

>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.8   2.2e-05      0.19     101     173 ..      32     105 ..      29     125 .. 0.77
   2 ?   -3.5   0.6      0.58   5.2e+03     109     134 ..     207     232 ..     201     245 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.2e-05
        ThrE 101 rskpryprwlvv.laaglaaaafallfggdwidflvaflagllggllrlllakrglnsfvleavaaflasllal 173
                 r++  y   +++ laa +a+ + ++l+g +w+++lva+ +++ +  + +l ++ g+ +++   +a+  a+lla 
  KIR63212.1  32 RRPAGYAVRIALtLAAFVAGWVAVPLVGDSWWQLLVAAGLAVATTQVAFLGHDAGHRQMFRRRAASEAAGLLAG 105
                 556666655555055555555666677**************999999999999999999999999999998884 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.58
        ThrE 109 wlvvlaaglaaaafallfggdwidfl 134
                 +l++ aag ++  fa+l  g+ ++f+
  KIR63212.1 207 LLALHAAGYLGLLFAVLSPGKALAFI 232
                 45666777777777777777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2630.73
//
Query:       KIR63213.1  [L=97]
Description: pterin-4-alpha-carbinolamine dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-24   86.2   0.0    1.4e-24   86.1   0.0    1.0  1  Pterin_4a  Pterin 4 alpha carbinolamine dehydratase


Domain annotation for each model (and alignments):
>> Pterin_4a  Pterin 4 alpha carbinolamine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.0   7.8e-29   1.4e-24       3      91 .]       5      92 ..       3      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 7.8e-29
   Pterin_4a  3 lseeeiqkllaelpgWrleeaeelerefkfkdfeeaiafvnrvaalaeeenHhpdilvsynkvtvrltThdaggltenDfklAakidel 91
                l++e +++ l  l gW++ + + ++r+ ++ +f +a+a+v+rva++aee +Hhpdi ++++++t+r+ Th+agg+t +D++lA++id++
  KIR63213.1  5 LTAEAVRDGLGGLAGWTG-DPTGISRTAELGSFPAAVAVVDRVAEVAEELDHHPDIDIRWRTLTFRCVTHSAGGVTHRDLELARRIDDI 92
                8999999999889****9.6667****************************************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 722.85
//
Query:       KIR63214.1  [L=383]
Description: hypothetical protein TK50_20330 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.05   13.3   0.1        0.1   12.4   0.1    1.4  1  CBX7_C    CBX family C-terminal motif


Domain annotation for each model (and alignments):
>> CBX7_C  CBX family C-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   5.6e-06       0.1      10      23 ..     300     313 ..     295     314 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.6e-06
      CBX7_C  10 lvdnVivTDVTvNs 23 
                 +v++VivTDV +N+
  KIR63214.1 300 RVGEVIVTDVSTNG 313
                 69*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2908.29
//
Query:       KIR63215.1  [L=273]
Description: amidinotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-17   62.8   0.0    4.8e-17   62.1   0.0    1.4  1  Amidinotransf  Amidinotransferase
  ------ inclusion threshold ------
       0.17   12.1   5.0        2.5    8.3   0.2    2.5  2  TetR_C_6       BetI-type transcriptional repressor, C-termina


Domain annotation for each model (and alignments):
>> Amidinotransf  Amidinotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0   5.3e-21   4.8e-17     101     337 ..      55     265 ..      33     268 .. 0.88

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 5.3e-21
                    HH----EEE---GGGG-TTTTEEEEBSEEEE---SSGGGHHHHHHHHHHHHHSHTSB-EEEEE-TTS--TT----G.GGEEEEETTEEEEEESSSS CS
  Amidinotransf 101 atsnnsflipplpnlvFtrdwfstigggvvlnpmaapnRrrErllaeliykkhpgvkvakvldisgkeeesktlEG.GdfvvlskgvvaigvssRt 195
                    +t+++ + +p lp++vF  +  + i+g+++  ++ +p+R  E  ++++++++          +++  ++++   EG Gd+++ ++  +a g + Rt
     KIR63215.1  55 HTVEEIVPVPGLPDMVFAANGGTVIDGHAMSVQFRDPQRADEAPAYRAWFAA---------AGFE-LHDPKHVNEGeGDVLLAGDVLLA-GTGFRT 139
                    566777889*******************************************.........6777.578999********977766666.****** PP

                    -HHHHHHHHHHHHHTTS-SEEEEEE--GGSSTS-GGGTEEEEETTEEEE-HHHH.TT-ESS-HHHHHHHHTT-SS-EEEE-CS-SS-B---S-EEE CS
  Amidinotransf 196 deegieelakklfyktvafkviaieipkgraimHldtvftvvdddavvclpsildaegvkakereavaqaLkekgleiIeigeeeqwnfggNvLel 291
                      +   +l++ ++y +++ +        +  ++Hldt +tv+d+ +v +lp+  ++       ++a  ++L  +    ++ ++++ +  g N+++ 
     KIR63215.1 140 AHASHAQLQEVFGYPVITLQL------VDPRFYHLDTALTVLDERTVAYLPEAFSPG------SRAALRRLFPDA---VHATAADAEVLGLNAVSD 220
                    ***************777777......6789*************************9......444444455555...99999*********9986 PP

                    ETTEEEEETTGHHHHHHHHHTT-EEEEE-HTTTGGGS--TTTT-EE CS
  Amidinotransf 292 kpgvvvaydrntvtnekleeagievievpiselerGgGgarCmsap 337
                    +   vv  ++ t   ++l+++g+e i v++sel ++gGg++C++  
     KIR63215.1 221 G-RHVVLPEQATGLAAQLRDRGYETIGVDLSELRKAGGGPKCCTLR 265
                    6.556789***********************************976 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.2   0.00028       2.5      33      93 ..      32      89 ..      30     107 .. 0.74
   2 ?    5.2   0.8    0.0026        23      48      86 ..     189     222 ..     173     241 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00028
                HTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSTHHHHHHHHHHHHHHHHHHHHHT CS
    TetR_C_6 33 aardpelaelqrenyarlrsnlrallaelaegglradadaeaaAerlaAlidGLwlraala 93
                a++d+ la +q e  ++++++l ++++e+++    ++     +A+    +idG ++++   
  KIR63215.1 32 APVDAGLAVRQWERLRQVYRELGHTVEEIVP---VPGLPDMVFAANGGTVIDGHAMSVQFR 89
                8899***************************...555555566666666777776665544 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0026
                 HHHHHHHHHHHHHHHHTTSCTTSTHHHHHHHHHHHHHHH CS
    TetR_C_6  48 arlrsnlrallaelaegglradadaeaaAerlaAlidGL 86 
                  + r+ lr+l+ +++      +  a+a+  +l+A+ dG 
  KIR63215.1 189 PGSRAALRRLFPDAVH-----ATAADAEVLGLNAVSDGR 222
                 5667777777777777.....999**************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2039.87
//
Query:       KIR63216.1  [L=217]
Description: hypothetical protein TK50_20345 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-24   87.3   1.6    1.3e-24   87.1   1.6    1.0  1  NAD_binding_10  NAD(P)H-binding
    3.1e-08   33.5   3.0    3.7e-08   33.2   3.0    1.1  1  NmrA            NmrA-like family
    6.8e-08   32.3   1.1    8.3e-08   32.0   1.1    1.2  1  Epimerase       NAD dependent epimerase/dehydratase family
    7.6e-05   22.9   0.2    0.00011   22.4   0.2    1.4  1  TrkA_N          TrkA-N domain
      0.005   17.4   0.6      0.005   17.4   0.6    2.0  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
     0.0086   15.2   0.5      0.012   14.8   0.5    1.2  1  RmlD_sub_bind   RmlD substrate binding domain
  ------ inclusion threshold ------
      0.033   14.3   0.4       0.05   13.7   0.4    1.3  1  DapB_N          Dihydrodipicolinate reductase, N-terminus
       0.11   12.9   9.8       0.24   11.8   9.8    1.6  1  NTP_transf_3    MobA-like NTP transferase domain
       0.12   12.2   2.8       0.18   11.6   2.8    1.2  1  DFP             DNA / pantothenate metabolism flavoprotein


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   1.6   6.4e-28   1.3e-24       1     184 []       8     200 ..       8     200 .. 0.83

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 6.4e-28
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC.....HHHHHHHHHHHHHHCT- CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggk.....deegaknivdaakeagv 90 
                     GA G+ Gr++v+e+ ar ghevta+vR+p++ ++l+ae g++v +gdvtd+  +ae  +g+da v a++  g         +a++++  + +agv
      KIR63216.1   8 GAGGRAGRAVVAEARAR-GHEVTAVVRDPARHPALAAERGVRVASGDVTDAGRVAELAAGHDAAVHAAADLGVpadvfFPAAARALASGLGRAGV 101
                     9****************.5*******************************************87777765555233555555************* PP

                     -EEEEEEETTTTSGCGCHHHHHHH...HCCHHHHHHHHHHHHHHHH..SSSEEEEEEE-CEE-...ST--SEEEEETTSS----EEEHHHHHHHH CS
  NAD_binding_10  91 kRfvlvsaigvgdevpgefgewnk...ellkaylaakraaeellra..sgldwTivrpggLtd...epttkyrvvekgepfkggsisradVAdvl 177
                      R+v+v+ + v    +g++   +    + ++a    + a  e lr+     dw +++p+g  d   +p+++yr+++ +    g++i+  d+A +l
      KIR63216.1 102 GRLVVVGLAAVLPTEAGALLLDTPgypQEYRAFCLGHGAGNEALRRaeGAPDWLVLSPAGDFDhtgQPAGGYRFATADA---GSRITYPDLALAL 193
                     ************888887654433111556666789****999998534789********87633247999*9998765...789*********9 PP

                     HHHCTXG CS
  NAD_binding_10 178 vavlddp 184
                     ++ +d p
      KIR63216.1 194 LDEIDAP 200
                     9988865 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   3.0   1.9e-11   3.7e-08       1      72 [.       4      74 ..       4     111 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.9e-11
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE-- CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvt 72
                I+v+Ga Gr G++vv+ + ++gh+v a+vRd+ ++ a + +e+Gv + +gd+ d   ++e+  g d++  + 
  KIR63216.1  4 IVVFGAGGRAGRAVVAEARARGHEVTAVVRDPARHPALA-AERGVRVASGDVTDAGRVAELAAGHDAAVHAA 74
                89******************************8887765.799******************99999876655 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   1.1   4.2e-11   8.3e-08       1      80 [.       4      82 ..       4     114 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 4.2e-11
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.elveldltdrsalerlfkeeqpdavihlAavggvaas 80
                i+V Ga G  G+a+v +  ++g+ev+++ r++ +++  + e+  ++  +d+td+ ++++l +  + da +h+Aa  gv+a 
  KIR63216.1  4 IVVFGAGGRAGRAVVAEARARGHEVTAVVRDPARHPALAAERGvRVASGDVTDAGRVAELAA--GHDAAVHAAADLGVPAD 82
                79*****************************7766655444437******************..89********6666554 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.2   5.5e-08   0.00011       1      62 [.       4      67 ..       4     100 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 5.5e-08
                EEEES.-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHH.HTTSEEEES-TTSHHHHHHTTGGG CS
      TrkA_N  1 iiiiG.lGrvGrslaeeLse.ggkdvvvidkdeerveelr.eeglevvvgdatdeevLeeagiek 62
                i++ G  Gr Gr+++ e ++ g+ +v+++ +d++r   l+ e+g++v  gd+td   ++e+ + +
  KIR63216.1  4 IVVFGaGGRAGRAVVAEARArGH-EVTAVVRDPARHPALAaERGVRVASGDVTDAGRVAELAAGH 67
                68888568************555.7**********988862566**********87777765555 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.6   2.5e-06     0.005       4      63 ..       6      62 ..       3      65 .. 0.88
   2 ?   -0.3   0.2      0.83   1.7e+03      11      23 ..      89     101 ..      87     111 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.5e-06
                   EE.TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-S CS
  F420_oxidored  4 ii.GaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeead 63
                   +  ++G+ g+a++  + a+g   he++ a  r+p +  +la+e gv+v ++d  +a + a+
     KIR63216.1  6 VFgAGGRAGRAVVAEARARG---HEVT-AVVRDPARHPALAAERGVRVASGDVTDAGRVAE 62
                   4425789*************...****.77**********************999988766 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.83
                    HHHHHHHHHHTTS CS
  F420_oxidored  11 gealasgllaaga 23 
                    ++alasgl +ag+
     KIR63216.1  89 ARALASGLGRAGV 101
                    799********93 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.5   5.9e-06     0.012       3      60 ..       4      75 ..       1      81 [. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.9e-06
                   EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT................T--TTSHHHHHHHHHHH--SEEEE--- CS
  RmlD_sub_bind  3 ilvtGanGqlGseLakqlaeeglevlaltre................eldltdaeavaellkeakpdvvvnaAA 60
                   i+v+Ga+G  G++++++++++g+ev+a+ r+                + d+tda +vael +    d+ v+aAA
     KIR63216.1  4 IVVFGAGGRAGRAVVAEARARGHEVTAVVRDparhpalaaergvrvaSGDVTDAGRVAELAAG--HDAAVHAAA 75
                   89**************************99999*************99***********9887..677899998 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.4   2.5e-05      0.05       3      39 ..       4      40 ..       2      83 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.5e-05
                EEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTC.STT CS
      DapB_N  3 vavvGasGrmGkevvkaveeaedlelvaavdrke.sel 39
                ++v+Ga Gr G++vv  +++ +++e++a+v  +  +++
  KIR63216.1  4 IVVFGAGGRAGRAVVAEARA-RGHEVTAVVRDPArHPA 40
                89***************999.99999999987763333 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   9.8   0.00012      0.24      28     115 ..      15     100 ..       5     162 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
                   HHHHHHHCTT.-CEEEEECSHCHHHHHH.TTCTS-EEE-TTSS-SHHHHHHHHHHHH.SSSCEEEEETT-TT--HHHHHHHHHCHHHHT CS
  NTP_transf_3  28 ervldalraagvdevvvvggdeevlaal.arlgvrvvededpgkgplaslaaalraaadadavlvlacDmPlltpelverllaaaaasg 115
                   + v++ +ra g +ev+ v++d++ ++al a++gvrv++ +  ++g +a laa+ +aa +a a l +++D+ +  p++ ++l+  + ++g
    KIR63216.1  15 RAVVAEARARG-HEVTAVVRDPARHPALaAERGVRVASGDVTDAGRVAELAAGHDAAVHAAADLGVPADVFF--PAAARALASGLGRAG 100
                   56778888776.899999999876666515778***********************99************88..888899888876555 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.8   9.2e-05      0.18      28      91 ..      10      75 ..       8      84 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.2e-05
                --HHHHHHHHHHHHTT-EEEEEE-S.-SS---TT-EEEE--SHHHHHH.HHHHHHTT-SEEEE--- CS
         DFP 28 SGkmGyalAeaaaarGaeVtlvsgp.vsletpegvevvkvesaeemle.aveealkeadivimaAA 91
                 G+ G a+ ++a+arG+eVt v     + ++ ++ + v+v s +   +  v e ++ +d++++aAA
  KIR63216.1 10 GGRAGRAVVAEARARGHEVTAVVRDpARHPALAAERGVRVASGDVTDAgRVAELAAGHDAAVHAAA 75
                59******************99766245454445567777776554432577788889*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1653.42
//
Query:       KIR63217.1  [L=122]
Description: HxlR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-21   76.1   0.0    1.7e-21   75.8   0.0    1.0  1  HxlR      HxlR-like helix-turn-helix
    0.00027   20.8   0.0    0.00044   20.1   0.0    1.3  1  PadR      Transcriptional regulator PadR-like family
    0.00059   19.7   0.4    0.00088   19.1   0.4    1.3  1  MarR_2    MarR family
     0.0011   19.4   0.0     0.0014   19.1   0.0    1.2  1  HTH_27    Winged helix DNA-binding domain
  ------ inclusion threshold ------
      0.013   15.4   0.0       0.02   14.8   0.0    1.2  1  MarR      MarR family
      0.038   13.6   0.4      0.063   12.9   0.4    1.3  1  GntR      Bacterial regulatory proteins, gntR family
      0.094   12.9   0.1       0.13   12.5   0.1    1.2  1  PaaX      PaaX-like protein
       0.17   11.8   0.1       0.61   10.0   0.0    2.0  2  HTH_5     Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0   7.8e-25   1.7e-21       3      88 ..      24     109 ..      22     111 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 7.8e-25
                 HSTTHHHHHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHHHHHHHHHH CS
        HxlR   3 ggkWkllilvellkgkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelkkwgeeyle 88 
                 g+kW +++++ l  g++Rfsel+  l ++s k L+++Lr+Le++gl+ r++ p  P +veY lt+ Grs+   ++++++w +e+ +
  KIR63217.1  24 GDKWGGMVIRCLEGGPRRFSELRVPLRGVSAKALTASLRRLEASGLVRRSEQPGPPRRVEYALTALGRSMLGPIEAVCAWNREHWD 109
                 89******************************************************************************998866 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0     2e-07   0.00044      37      73 ..      60      94 ..      49      95 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2e-07
                HHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHH CS
        PadR 37 aLkrLekeglveseweesgegpprkyYrlTdaGrrel 73
                 L+rLe++glv +++++    p+r  Y+lT+ Gr+ l
  KIR63217.1 60 SLRRLEASGLVRRSEQP--GPPRRVEYALTALGRSML 94
                59************998..5677778*******9865 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.4   3.9e-07   0.00088      14      58 ..      32      77 ..      30      81 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.9e-07
                HHCTTTSEEEHHHHHH.HHTSSHHHHHHHHHHHHHTTSEEEEESSS CS
      MarR_2 14 Lgrrpgrdltvgelar.rlglsksavsrilkrLvaaGLverrpgpe 58
                +++ +g++ + +el     g+s  a++  l+rL+a GLv+r++ p+
  KIR63217.1 32 IRCLEGGPRRFSELRVpLRGVSAKALTASLRRLEASGLVRRSEQPG 77
                66666665588888888889*********************96654 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   6.1e-07    0.0014      30      68 .]      52      90 ..      30      90 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 6.1e-07
      HTH_27 30 vedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68
                v++ +   sl++L++ GLv r++ + + r++ ++lT+ G
  KIR63217.1 52 VSAKALTASLRRLEASGLVRRSEQPGPPRRVEYALTALG 90
                45556669****************************977 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   8.7e-06      0.02      28      54 ..      51      77 ..      49      82 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.7e-06
                TS-HHHHHHHHHHHHHTTSEEEEEETT CS
        MarR 28 gvskstvtrvldrLekkGlieRskspe 54
                gvs  ++t  l+rLe  Gl++Rs  p+
  KIR63217.1 51 GVSAKALTASLRRLEASGLVRRSEQPG 77
                578889*****************9986 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   2.8e-05     0.063      35      59 ..      51      75 ..      44      77 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.8e-05
                TS-HHHHHHHHHHHHHTTSEEEETT CS
        GntR 35 gVsrttvReALrrLeaeglverrqg 59
                gVs+  +  +LrrLea glv r  +
  KIR63217.1 51 GVSAKALTASLRRLEASGLVRRSEQ 75
                8********************9876 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1     6e-05      0.13      34      68 ..      51      88 ..      44      90 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6e-05
        PaaX 34 GiseslvRaalsRlakaGwlvrekeg...rrsfYrLsd 68
                G+s++++ a+l Rl++ G+++r+++    rr+ Y+L++
  KIR63217.1 51 GVSAKALTASLRRLEASGLVRRSEQPgppRRVEYALTA 88
                899*****************998873244699999986 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.8     4e+03      15      22 ..      12      19 ..      11      19 .. 0.86
   2 ?   10.0   0.0   0.00027      0.61       9      46 ..      33      71 ..      30      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.8
                SEEHHHHH CS
       HTH_5 15 elcvcela 22
                +lc ++l+
  KIR63217.1 12 PLCPSDLS 19
                89****97 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00027
                HHHTTSSEEHHHHHHHH.TS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  9 klLaegelcvcelaeel.glsqstvShHLkkLreaGLVe 46
                + L+ g++ ++el   l g+s  ++   L++L+ +GLV+
  KIR63217.1 33 RCLEGGPRRFSELRVPLrGVSAKALTASLRRLEASGLVR 71
                5677778888888555438*******************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 926.81
//
Query:       KIR63218.1  [L=301]
Description: aminoglycoside phosphotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-41  141.5   1.9    3.6e-41  141.2   1.9    1.1  1  APH_6_hur       Aminoglycoside/hydroxyurea antibiotic resista
  ------ inclusion threshold ------
      0.076   12.9   8.5       0.19   11.6   8.5    1.8  1  APH             Phosphotransferase enzyme family
      0.076   12.9   0.1       0.42   10.5   0.1    2.4  2  HTH_AsnC-type   AsnC-type helix-turn-helix domain
       0.11   12.8   1.1         12    6.2   0.0    3.0  3  DNA_pol_A_exoN  3' to 5' exonuclease C-terminal domain


Domain annotation for each model (and alignments):
>> APH_6_hur  Aminoglycoside/hydroxyurea antibiotic resistance kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2   1.9   8.1e-45   3.6e-41      13     242 ..      50     277 ..      37     285 .. 0.89

  Alignments for each domain:
  == domain 1  score: 141.2 bits;  conditional E-value: 8.1e-45
   APH_6_hur  13 tesSlvlkVlradGapAvlKlakpredaeeErrgallLvwwgGdGavrvleedeeesalLLErlsgersltslvaegdD....deAtrilaellarLha 107
                 +++Sl  +V  +dG++AvlKl+ p +d+  E    ++L+ w GdGa+r+l++d   +alL+Er ++ + l ++ ++g      deA+ ++a+ll rL++
  KIR63218.1  50 AFASLARPVELPDGTRAVLKLQLPDADSVHEA---TALACWAGDGAARLLAHDPGRRALLVERCDPGTQLHAVGRDGAPqvtlDEALDVVAGLLPRLWR 145
                 789********************999988877...78************************************98764333348*************** PP

   APH_6_hur 108 pspgplPpLlpleevfealfreaasdaga....gasrlyveaaaiaaeLleepselrpLHgdlhhenvLagerrgWlaidPkglvGergfdlanllrnp 202
                 p   p    +pl+e +++  ++ + + +      + rl ++a+   aeL+++  e+ +   dlh  n+L + r++Wl+idPk+l Ger f++  ++r +
  KIR63218.1 146 PVGAPF---TPLAEEAAGWSEQLPVRWERlgrpFERRLLDAALGRLAELVDTQGEQVLVNQDLHAGNILRATREPWLVIDPKPLAGEREFGVVAIVRGQ 241
                 *97766...999999999999998877777778667999******************************************************999865 PP

   APH_6_hur 203 vertdlaldprrierrlevlaealeldrarlldwvlaytv 242
                     +l   p  ++rrl+ l+  l+ldr+r+l+w++ +t+
  KIR63218.1 242 ----ELGHSPAAVRRRLDKLTGDLGLDRERVLGWAIGHTL 277
                 ....45779*************************997775 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   8.5   4.3e-05      0.19      24     193 ..      67     223 ..      22     227 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.3e-05
                 EEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS.....HHHHHHHHHHHHHHHHHHCCHHCH..-STTTB- CS
         APH  24 vlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr.....klsaaqlpellealgeflaalhqvd.paalpla 116
                 vl++  p   a ++++  al  +   ag  ++++la     ++ g++++l+e++++ + l+        +  l+e+l+ ++ +l +l +   +++ pla
  KIR63218.1  67 VLKLQLPD--ADSVHEATALACW---AGDGAARLLA-----HDPGRRALLVERCDPGTQLHavgrdGAPQVTLDEALDVVAGLLPRLWRPVgAPFTPLA 155
                 55555555..3333333333333...2222345555.....4444444444444333333324332222222333333333333333222113333333 PP

                 SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE--- CS
         APH 117 dflaqdlellrqlesatarllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDf 193
                  ++    + +++ +++ + +++ e +     l++ +l +la+l+++++++vl+  Dlh gN+l   +++ +  viD 
  KIR63218.1 156 EEA--AGWSEQLPVRWERLGRPFERRL----LDA-ALGRLAELVDTQGEQVLVNQDLHAGNILRATREPWL--VIDP 223
                 333..2233333333322222222222....333.99999999999*******************999999..9995 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.3   5.8e+03      18      31 ..     149     163 ..     149     164 .. 0.77
   2 ?   10.5   0.1   9.4e-05      0.42      24      41 ..     240     257 ..     240     258 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.3
  HTH_AsnC-type  18 isyaeLAe.rvGlSe 31 
                    ++++ LAe + G+Se
     KIR63218.1 149 APFTPLAEeAAGWSE 163
                    588889997888887 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 9.4e-05
  HTH_AsnC-type  24 AervGlSestvlrRvrrL 41 
                    ++++G S+++v+rR+++L
     KIR63218.1 240 GQELGHSPAAVRRRLDKL 257
                    689*************99 PP

>> DNA_pol_A_exoN  3' to 5' exonuclease C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.35   1.6e+03       2      34 ..       7      39 ..       6      42 .. 0.79
   2 ?    3.4   0.0     0.021        92       6      42 ..     159     201 ..     155     207 .. 0.69
   3 ?    6.2   0.0    0.0027        12      20      58 ..     248     289 ..     245     300 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.35
                    -S-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHT CS
  DNA_pol_A_exoN  2 lPppraWaekdPeaaerlkavraaleelaeele 34
                    +P++ +W ++ P   + l+a    l +  e++ 
      KIR63218.1  7 IPERLSWLRRTPFGRAWLAALPGRLADCVEQWG 39
                    688999999999999988888777777777765 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.021
                     HHHHHH-HHHHHHHHH......HHHHHHHHHHHHT--HHHHS- CS
  DNA_pol_A_exoN   6 raWaekdPeaaerlka......vraaleelaeeleipvenllt 42 
                       W+e+ P ++erl +        aal  lae ++++ e++l 
      KIR63218.1 159 AGWSEQLPVRWERLGRpferrlLDAALGRLAELVDTQGEQVLV 201
                     56***********965322122446677778888888777775 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0027
                     HHHHHHHHHHHHHHT--HHHHS-HHHHHHHH-SS-G.....G CS
  DNA_pol_A_exoN  20 kavraaleelaeeleipvenlltpdllrrlvWeppet...lt 58 
                     +avr  l++l  +l +  e +l  ++  +l+W+ +++   ++
      KIR63218.1 248 AAVRRRLDKLTGDLGLDRERVLGWAIGHTLAWSMTDDvvfTE 289
                     579******************************999755433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.51
# Mc/sec: 1781.66
//
Query:       KIR63219.1  [L=473]
Description: molybdenum metabolism regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-15   55.7   0.0    6.7e-15   54.9   0.0    1.4  1  WGR        WGR domain
    1.3e-13   51.1   2.0    4.2e-10   39.6   0.2    3.3  2  PQQ_2      PQQ-like domain
    2.7e-10   40.4  23.4    0.00069   20.0   0.1    7.5  8  PQQ_3      PQQ-like domain
    0.00056   19.7   9.9       0.67   10.0   0.1    5.9  6  PQQ        PQQ enzyme repeat
  ------ inclusion threshold ------
      0.014   14.8   0.0       0.42    9.9   0.0    2.1  2  WD40_like  WD40-like domain
      0.081   13.8   3.4        8.7    7.4   0.1    3.8  4  WD40       WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WGR  WGR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   2.2e-18   6.7e-15       3      76 ..       6      73 ..       4      77 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 2.2e-18
                EEEEEEETTTTEEEEEEEEE.EE-TTS-EEEEEE-S-TTS----EEEEESSHHHHHHHHHHHHHHHHSS-STTG CS
         WGR  3 lyleqtdiarnsnkFYkiqlleddlfggyslfvrWGRiGtrGqtklksfdseeeAikefeklfaeKtkkgyeer 76
                +yle+ ++++  +kFY++ +      +++ l+ r+GRiG++Gq k++++ ++++A +++ k++ eK +kgy+++
  KIR63219.1  6 TYLELSEADGAAHKFYEVVV------DDTALTLRYGRIGDQGQVKTTTYPDNARARAAAAKKIGEKVRKGYAPA 73
                79******************......99*******************************************986 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.4   1.3e-06     0.004      58     149 ..     100     259 ..      75     262 .. 0.62
   2 !   39.6   0.2   1.4e-13   4.2e-10       4     140 ..     243     367 ..     240     372 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.3e-06
       PQQ_2  58 vlWettlegpvvgaplvaegrvvvvasdgqlialdaedGkr.......................................................... 98 
                 vlW+++  +p+ g+ +v++++ +v ++ g++++ld +d ++                                                          
  KIR63219.1 100 VLWRYASGAPAFGI-FVDGQHCMVGNEHGVITTLD-HDARVldqvrlpdgvkcivaddawlyagcddgnvydlsgkvprvayaiapdidiywldihdgv 196
                 56666666666666.66666666666666666666.555554555555555555555555555555555555555555555555555555555555555 PP

       PQQ_2  99 ...................lWstqqrseepaelrssaspava.gdtvvvgessgklvaldpkdGkvlWere 149
                                    lW++  r+         a+  v+ +  ++ +++s +++++d ++G++lW++ 
  KIR63219.1 197 lgvadadggiaaidhedefLWRRPGRG--------RAAWMVRcDADALYHGHSQGVTGYDWRTGRELWHTR 259
                 56666666666665555559*944444........55555556444455666999*************986 PP

  == domain 2  score: 39.6 bits;  conditional E-value: 1.4e-13
       PQQ_2   4 vvsaldaatGaelWrvdlarplgggvsravlsggtlfvatgggrlvaldaatGkvlWettlegpvvgaplvaegrvvvvasdg..qlialdaedGkrlW 100
                  v+ +d +tG+elW +      +g v  +  +++ +f++tg++++v l  ++G+   ++++++pv +  + ++gr v++ +d+  +++ +d + G+rlW
  KIR63219.1 243 GVTGYDWRTGRELWHT-----RTGSVLFGWQERDAVFAGTGTREVVRLR-KDGRAEQTYRCDAPVFSCATAEDGRYVFA-GDNqsSIYCFD-AAGNRLW 333
                 5899************.....5677778999*****************6.***************99988888887555.566589999**.99***** PP

       PQQ_2 101 stqqrseepaelrssaspavagdtvvvgessgklvaldpk 140
                     ++      +s+ s+ +++d+++v+++sg l+++d++
  KIR63219.1 334 K-LGTG-----CGSAYSMQFHDDRLYVVTTSGYLACIDAS 367
                 *.7777.....88999*********************986 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.038   1.1e+02       3      37 ..     100     133 ..     100     140 .. 0.88
   2 !    9.7   0.0   0.00042       1.2       7      34 ..     142     168 ..     141     168 .. 0.85
   3 ?    2.0   0.4      0.11   3.3e+02      21      38 ..     194     211 ..     177     213 .. 0.84
   4 ?    1.8   0.2      0.13   3.7e+02       1      11 [.     252     262 ..     252     290 .. 0.81
   5 !   15.2   0.1   7.5e-06     0.022      10      39 ..     298     328 ..     294     328 .. 0.76
   6 !   20.0   0.1   2.3e-07   0.00069       1      38 [.     329     366 ..     329     367 .. 0.94
   7 ?   -2.3   0.1       2.4   7.3e+03      17      30 ..     400     417 ..     390     422 .. 0.51
   8 ?   -3.2   0.0       4.6   1.4e+04       5      13 ..     434     442 ..     433     448 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.038
       PQQ_3   3 vlWsvqlpgpvnsspavdgglvyvgtgdGtlyAlD 37 
                 vlW++  ++p+ ++  vdg +  vg + G ++ lD
  KIR63219.1 100 VLWRYASGAPA-FGIFVDGQHCMVGNEHGVITTLD 133
                 79*******99.8999***9999999988888776 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00042
       PQQ_3   7 vqlpgpvnsspavdgglvyvgtgdGtly 34 
                 v+lp+ v++  ++d+  +y+g++dG++y
  KIR63219.1 142 VRLPDGVKC-IVADDAWLYAGCDDGNVY 168
                 677877755.899**************9 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.11
       PQQ_3  21 gglvyvgtgdGtlyAlDa 38 
                 +g++ v++ dG++ A+D 
  KIR63219.1 194 DGVLGVADADGGIAAIDH 211
                 566668999*******95 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.13
       PQQ_3   1 GevlWsvqlpg 11 
                 G++lW +++++
  KIR63219.1 252 GRELWHTRTGS 262
                 89999999996 PP

  == domain 5  score: 15.2 bits;  conditional E-value: 7.5e-06
       PQQ_3  10 pgpvnssp.avdgglvyvgtgdGtlyAlDae 39 
                 ++pv s + a dg++v++g+ + ++y++Da+
  KIR63219.1 298 DAPVFSCAtAEDGRYVFAGDNQSSIYCFDAA 328
                 55665333255899***************95 PP

  == domain 6  score: 20.0 bits;  conditional E-value: 2.3e-07
       PQQ_3   1 GevlWsvqlpgpvnsspavdgglvyvgtgdGtlyAlDa 38 
                 G +lW+ +++    +s+ + ++++yv+t+ G l ++Da
  KIR63219.1 329 GNRLWKLGTGCGSAYSMQFHDDRLYVVTTSGYLACIDA 366
                 789******988889**********************9 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 2.4
       PQQ_3  17 p..avd..gglvyvgtgd 30 
                 +  ++d  gg+v+   +d
  KIR63219.1 400 VevVTDdrGGVVVQCVDD 417
                 343444223455444443 PP

  == domain 8  score: -3.2 bits;  conditional E-value: 4.6
       PQQ_3   5 Wsvqlpgpv 13 
                 Wsvq+p  +
  KIR63219.1 434 WSVQFPKGI 442
                 ****99765 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         2   6.1e+03      22      32 ..     100     110 ..     100     115 .. 0.74
   2 ?    2.6   0.1     0.047   1.4e+02       4      13 ..     159     168 ..     158     170 .. 0.92
   3 ?    3.0   0.0     0.038   1.1e+02       2      26 ..     196     219 ..     195     228 .. 0.85
   4 !   10.0   0.1   0.00022      0.67      12      31 ..     244     263 ..     240     267 .. 0.86
   5 ?    2.8   0.1     0.041   1.2e+02       3      27 ..     313     336 ..     312     338 .. 0.81
   6 ?    2.0   0.0     0.074   2.2e+02       2      18 ..     351     367 ..     350     368 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2
                 EEEEEESSSCG CS
         PQQ  22 vlWrfktggpv 32 
                 vlWr+  g+p 
  KIR63219.1 100 VLWRYASGAPA 110
                 69**9887776 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.047
                 EEEETTSEEE CS
         PQQ   4 ylgsadGyly 13 
                 y+g++dG++y
  KIR63219.1 159 YAGCDDGNVY 168
                 9********9 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.038
                 EEEEEETTSEEEEEETTTCCEEEEE CS
         PQQ   2 vvylgsadGylyAlDadTGkvlWrf 26 
                 v+ +++adG + A+D ++ + lWr 
  KIR63219.1 196 VLGVADADGGIAAIDHED-EFLWRR 219
                 667889*********999.999985 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00022
                 EEEEETTTCCEEEEEESSSC CS
         PQQ  12 lyAlDadTGkvlWrfktggp 31 
                 +  +D +TG++lW+++tg++
  KIR63219.1 244 VTGYDWRTGRELWHTRTGSV 263
                 678999***********987 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.041
                 EEEEETTSEEEEEETTTCCEEEEEE CS
         PQQ   3 vylgsadGylyAlDadTGkvlWrfk 27 
                 v++g++   +y +D + G+ lW+  
  KIR63219.1 313 VFAGDNQSSIYCFD-AAGNRLWKLG 336
                 567777778*****.99*****965 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.074
                 EEEEEETTSEEEEEETT CS
         PQQ   2 vvylgsadGylyAlDad 18 
                 ++y+ +  Gyl  +Da+
  KIR63219.1 351 RLYVVTTSGYLACIDAS 367
                 7899***********96 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00014      0.42      48     116 ..     112     179 ..     108     199 .. 0.84
   2 ?    2.7   0.0     0.022        66     275     298 ..     337     360 ..     302     363 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00014
   WD40_like  48 vklldddlilvvtlDGtillsllenee.evenekieedistvkviddklliGtnkGsiyvfskdlqleev 116
                   ++d+++ +v+   G i  ++l ++  + ++ ++ + + ++  +d  l+ G + G++y +s  +  +  
  KIR63219.1 112 GIFVDGQHCMVGNEHGVI--TTLDHDArVLDQVRLPDGVKCIVADDAWLYAGCDDGNVYDLSGKVPRVAY 179
                 56899*************..99999997899****************************99877655555 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.022
   WD40_like 275 sgvGviydmkfenntiyvgGeaGl 298
                 +g G+ y+m+f+++ +yv   +G+
  KIR63219.1 337 TGCGSAYSMQFHDDRLYVVTTSGY 360
                 57899*************999998 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0029       8.7      13      34 ..     148     167 ..     118     168 .. 0.78
   2 ?    0.5   0.1      0.43   1.3e+03       7      24 ..     237     249 ..     234     263 .. 0.79
   3 ?    3.7   0.0     0.042   1.3e+02       6      36 ..     294     324 ..     289     326 .. 0.76
   4 ?   -2.6   0.0       4.3   1.3e+04      14      28 ..     343     357 ..     331     360 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0029
                 EEEEEEETTSSEEEEEETTSEE CS
        WD40  13 vtslafspdgawlasGsdDgtv 34 
                 v ++    d awl +G+dDg+v
  KIR63219.1 148 VKCI--VADDAWLYAGCDDGNV 167
                 4455..8899**********98 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.43
                 EESS.SSEEEEEEETTSSE CS
        WD40   7 ltGH.ssvtslafspdgaw 24 
                 + GH ++vt+       +w
  KIR63219.1 237 YHGHsQGVTGY------DW 249
                 67**777**99......55 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.042
                 EEESSSSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   6 tltGHssvtslafspdgawlasGsdDgtvri 36 
                 t++   +v s+a+  dg+++++G+   +++ 
  KIR63219.1 294 TYRCDAPVFSCATAEDGRYVFAGDNQSSIYC 324
                 555555699************9976666665 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 4.3
                 EEEEEETTSSEEEEE CS
        WD40  14 tslafspdgawlasG 28 
                 +s++f++d  ++++ 
  KIR63219.1 343 YSMQFHDDRLYVVTT 357
                 577788888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3525.68
//
Query:       KIR63220.1  [L=379]
Description: carboxylate--amine ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-45  153.7   0.4      8e-45  153.4   0.4    1.1  1  GCS2      Glutamate-cysteine ligase family 2(GCS2)
  ------ inclusion threshold ------
      0.033   14.2   0.0       0.11   12.6   0.0    1.9  1  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GCS2  Glutamate-cysteine ligase family 2(GCS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.4   0.4   8.9e-49     8e-45       1     291 []      22     300 ..      22     300 .. 0.89

  Alignments for each domain:
  == domain 1  score: 153.4 bits;  conditional E-value: 8.9e-49
                 EEEEEEEEEEETTTTEE-.S-HHHHHCCCTTT-S.SSEEEE-SSTTEEEEE--SBSSHHHHHHHHHHHHHHHHHHHHHTT-EEE--SB-SS-------- CS
        GCS2   1 lgvEeeflvvdlatgdlr.gwseiledeaiiglseggsvvkelpegqvElstapleslaeaaeeisadleelrsvadelGlellglGthPfalrsedev 98 
                 +gvEeefl+vd++tg    ++  ++e ++  +l+  g+v++e + +q+E+ ++p   l+ +  +++  +++l+ +a+ +G+++l++Gt P  +++  +v
  KIR63220.1  22 VGVEEEFLLVDPHTGTAVpAVDLVME-QVPAELR--GQVEREFQTSQIEIGSPPGLELSSIRHSLGVLRRALADAAERAGVRVLAIGTGP-VEGPVPPV 116
                 79**************9945444444.5555556..9*****************************************************.******** PP

                 -------THHHHHGG..G.G-S--B-EEEEEEE-SSHHHHH.HHHHHHHTTHHHHHHHH--B-EETTEE-S-SB-GGGCCTTSTT-CS----SSHHH.H CS
        GCS2  99 tpkaryrrmleymdrvGvlgrqmmvaglhvqvnidssseedVevlrlvrallPvllAlsAnSPfleGrdtgyaStRariftqtpqagelplafedgaaf 197
                 ++k+r++rm+e++  +         +g+hv+v++++  e +V+vl+ vr++lP+l A  AnSPf+ G dtgyaS R+  ++++p+ +++p   +++ ++
  KIR63220.1 117 VDKPRFDRMIERFRLL---VPGPGNNGMHVHVGVPD-AETGVQVLNHVRPWLPILHAATANSPFSAGVDTGYASWRSVEWERWPSVAPTPYLESHE-HY 210
                 *************993...44556699*********.8999********************************************88888888776.7* PP

                 HHHHHHHTTSTT-SSGG.G--BSEEEETTTT.EEEEEEEE--...SSHHHHHHHHHHHHHHHHHHHH..H------GGGGTT.HHHHHHHHHHHGG CS
        GCS2 198 eryaryaldvpvidvrrfrlwldirpsslpgttlelrihdttlfPevrlrallearlldaqpadrld..alpaavlvallddeaeenawdavrsgl 291
                 er +r++   +v+ + +  l++  r+s+  + t+elri d +   + +++a+l a l +a  a +++  a+ +  ++++ ++ + ++ w+a+ +gl
  KIR63220.1 211 ERLIRQLIASGVMLDEG-MLYWYARLSAKYP-TVELRIGDVC---PSVDDAVLVAALVRALVATAMTdiAEGRPPIRTDHHL-LVAAHWRAAHDGL 300
                 *****************.8*********999.**********...9999999999999998877665224556666666666.889*****99885 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.2e-05      0.11      30      64 ..     247     282 ..     232     283 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.2e-05
                 TC.S--HHHHHHHHHHHHHHHHHHS----TT-HHHH CS
     GST_C_2  30 Gd.qptlaDialapflvrlraagpgfdireaypnlr 64 
                 Gd  p++ D++l + lvr+ +a+ ++di e+ p++r
  KIR63220.1 247 GDvCPSVDDAVLVAALVRALVATAMTDIAEGRPPIR 282
                 55589*****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2510.84
//
Query:       KIR63221.1  [L=268]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-29  102.1   0.0      4e-29  101.6   0.0    1.2  1  60KD_IMP  60Kd inner membrane protein
  ------ inclusion threshold ------
        2.4    8.0   4.2        2.3    8.1   1.0    2.5  2  LapA_dom  Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> 60KD_IMP  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   4.5e-33     4e-29       3     166 .]      36     255 ..      34     255 .. 0.78

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 4.5e-33
    60KD_IMP   3 laIilltiivrlillpltlkqlkssakmqelqPelkeiqekykkdkqklqqemmklYkkegvnplaGclplLiqlpifialyrvlrsla.......... 91 
                  aI+l+ti vrl++ pltl q++  ++ ++l+P+++++q++y++d+ +lq e+  lY+ +g++p+aGclp+L+q p+f+ +yr++++ +          
  KIR63221.1  36 AAIVLFTIAVRLLVSPLTLAQVRGERRRAALAPQVRDLQRRYADDPARLQSELFGLYRSAGASPVAGCLPALLQAPFFLVMYRLFSTGEgstgggtgda 134
                 69*************************************************************************************779888887776 PP

    60KD_IMP  92 ...........sfwikdLsapd....................lpillavttflqqklsksk........................kmqkmmlyvmplmi 135
                                                           l+ l+a++ + + +  +++                        ++   +l ++p + 
  KIR63221.1 135 gagllaerlagV---------PlgwhlsdglagaagplfgalLAALVALAWWSSRRARRAAaagttmtggtgtagggtptdgavpAVLGRVLPLLPYLT 224
                 665544433320.........1233334445666788876655555555555554444221344455666677778888888887333345589***** PP

    60KD_IMP 136 lffslsfpaglvlYwlvsnllsiaqqliink 166
                 ++ +l +p + vlY ++++ ++ ++q ++++
  KIR63221.1 225 VVAALVVPLAAVLYLVTTTAWTALEQAVLRR 255
                 **************************99875 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.14   1.2e+03      38      61 ..      52      75 ..      31      78 .. 0.51
   2 ?    8.1   1.0   0.00026       2.3      28      52 ..     163     186 ..     148     189 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.14
    LapA_dom 38 slwsylrlrrelrrlkkkikklek 61
                 +++++r  r+  +l  ++++l++
  KIR63221.1 52 LTLAQVRGERRRAALAPQVRDLQR 75
                223455555555566666666665 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00026
    LapA_dom  28 giGallgwllslwsylrlrrelrrl 52 
                 ++Gall+ l++l +++  rr+ r++
  KIR63221.1 163 LFGALLAALVAL-AWWSSRRARRAA 186
                 79**********.566666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1792.70
//
Query:       KIR63222.1  [L=522]
Description: chitinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-28   96.6  10.2    8.7e-28   96.6  10.2    3.0  3  CBM_2           Cellulose binding domain
    4.6e-09   36.4   0.2    4.8e-08   33.1   0.0    2.1  2  Glyco_hydro_18  Glycosyl hydrolases family 18
    0.00028   21.1   0.2    0.00074   19.8   0.2    1.6  1  CBM49           Carbohydrate binding domain CBM49
     0.0013   19.0   0.3     0.0038   17.5   0.3    1.9  1  fn3             Fibronectin type III domain


Domain annotation for each model (and alignments):
>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6  10.2   1.9e-31   8.7e-28       2     101 .]      39     135 ..      38     135 .. 0.97
   2 ?   -1.1   1.3      0.53   2.4e+03      43      57 ..     159     173 ..     148     229 .. 0.49
   3 ?   -1.3   0.1      0.61   2.7e+03      26      63 ..     256     292 ..     252     327 .. 0.74

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 1.9e-31
                 EEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTEE CS
       CBM_2   2 eatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGaa 100
                 +a ++ t +W++G++a++tv+N++s++i +W+v+++lpag+++ + W+at+++sG++vta n+swNgt+apG+s+sfGf   +tg    pt++tvnG +
  KIR63222.1  39 TAAFVRTASWSSGYEAKFTVTNDTSASIGSWNVQFDLPAGTTLGSFWDATMTTSGQHVTAVNASWNGTLAPGASTSFGFVVAGTGD---PTNCTVNGGS 134
                 788999******************************************************************************97...9********9 PP

                 - CS
       CBM_2 101 C 101
                 C
  KIR63222.1 135 C 135
                 9 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.53
                 EEEEEESEEEEEETT CS
       CBM_2  43 rvtqlWnatvsqsGn 57 
                 +v  +Wna    +G 
  KIR63222.1 159 SVSLAWNAVSGVTGY 173
                 333333333222222 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.61
                 SS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE CS
       CBM_2  26 ssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatn 63 
                  + ++ +t+ + l+ g   t +W++t   +G +++at 
  KIR63222.1 256 ATGVKWFTIAFVLS-GGGCTPAWDGTGPLTGGAHAATI 292
                 55566668888887.77789999999888888877764 PP

>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.1e-11   4.8e-08      52     214 ..     288     437 ..     241     461 .. 0.73
   2 ?    1.0   0.1     0.064   2.9e+02     291     312 .]     471     493 ..     455     493 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.1e-11
                     HHHHHHHHTSTT-EEEEEEEETTTTTHHHHHHTSHHHHHHHHHHHHHHHHHCT-SEEEEEES-TTTS.TCHHHHHHHHHHHHHHHHHHHHHHTST CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18  52 qlkklkkkknpgvkvllsiGGwtdssgfslaastdasrkkfadsvvsllrkygfDGiDidweypggn.pedkenytallkelrealdkakategk 145
                      ++++++ ++ g  v+ s+GGw++     ++  +  s+ ++a  + ++++ yg+  iDid+e   ++ +e+ +  +++l +l+     ++++ g 
      KIR63222.1 288 HAATIAAIRAAGGDVIPSFGGWSG----NKLGPNCSSASALAGAYQQVINAYGLKAIDIDIE-N-SDeFENEAVQDRILGALKI---VKQNNPGI 373
                     456667777889***********9....223223378999**********************.3.4424434444557777777...34446788 PP

                     TCEEEEEEESSHHHHHHHCHHHHHHHHT...SEEEEETTTSSSTTSSBE--SS-SSBTCSSHHHHHHHHHHT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 146 kllLsaavpasasdlskgydlpkiakyl...DyvnvmtYDfhgswdnvtghhaplydaslnvdeavkeylka 214
                     k +++   ++ ++++  +  ++++a++    D + +m +Df g         a++y++++n++e++k+ lk+
      KIR63222.1 374 KTIVTFGTSTTGPSYYGTRLINQAAALGaniDTFTIMPFDFGGG--------ANMYQNTVNASEGLKTALKN 437
                     8999999999999975565555555555666************6........66677666666666655543 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.064
                     HHH.HHHHHTTESEEEEETGGGS CS
                     xxx.xxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 291 aka.dyvkakglgGvmiWsldqD 312
                     +++ d++ka+gl  + +Ws+++D
      KIR63222.1 471 TQIrDWAKARGLSRFTFWSVNRD 493
                     56779****************98 PP

>> CBM49  Carbohydrate binding domain CBM49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.2   1.7e-07   0.00074      11      79 ..      48     118 ..      42     120 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.7e-07
       CBM49  11 WkdngktyyqvevtitNnssktiksltlkienla....pgeiWgvek.vskntysl..pswlsslsaGeslsFgYi 79 
                 W++     y ++ t+tN +s+ i s +++ + l     +g++W+ +  +s++ ++    sw+ +l +G+s sFg++
  KIR63222.1  48 WSSG----YEAKFTVTNDTSASIGSWNVQFD-LPagttLGSFWDATMtTSGQHVTAvnASWNGTLAPGASTSFGFV 118
                 5544....56899************999998.4445679*****9995555555432279***************9 PP

>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.3   8.6e-07    0.0038       2      85 .]     146     217 ..     145     217 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 8.6e-07
                 CECEEEEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTSTEEEEEECSTSSEEEEESSSTTEEEEEEEEEEETSEEEEEE CS
         fn3   2 aPsnlsvsevtstsltvsWeppkdgggpitgYeveyrekgseeewneftvprtttsvtltgLkpgteYevrVqavngggegpes 85 
                  P++l+v+ +t++s+++ W++     + +tgY+v y    +++ +   tv++t+  +t+ gL   +  + +V+a+n  ge+  s
  KIR63222.1 146 TPGGLRVTGTTASSVSLAWNAV----SGVTGYRV-Y----EGS-TLKATVTGTS--ATVAGLATCSAHSYTVAAYNSSGESAKS 217
                 599*******************....89******.4....444.5677999998..*********************9988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 3559.40
//
Query:       KIR63223.1  [L=223]
Description: alanine dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-26   91.1   0.9    6.6e-26   91.1   0.9    2.4  3  SNARE_assoc  SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.6      0.49   8.8e+03      21      34 ..      15      28 ..      11      37 .. 0.62
   2 !   91.1   0.9   3.7e-30   6.6e-26       1     118 [.      44     170 ..      44     172 .. 0.91
   3 ?    1.2   0.1     0.027   4.8e+02      30      57 ..     184     210 ..     182     221 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.49
  SNARE_assoc 21 lvtslgallGasla 34
                 l+ +++ ++Ga+ a
   KIR63223.1 15 LTGWVADVIGALGA 28
                 56666666666654 PP

  == domain 2  score: 91.1 bits;  conditional E-value: 3.7e-30
  SNARE_assoc   1 lPsevllvaaGvlf.....glllgtlvtslgallGaslayllgrylgrkalrrkllsekrvka......lerlverygflallllrllpivPrdlvny 87 
                  +Pse++l++aG+l+     +++l ++++ +g+llGa++ y+lg+ lg+    +++l++ ++        ++r++er+g +a+l++r++p+v r+lv++
   KIR63223.1  44 IPSEIVLAMAGYLAsqgqfNVVLIVVAATVGSLLGALVLYWLGAALGE-ERLKRWLDHIPLVDrddlekADRWFERHGRWAVLIGRVVPVV-RSLVSV 139
                  8*************999889999************************5.55555666666555577777**********************.****** PP

  SNARE_assoc  88 vaGltrvsfkrFflatfiGsipwalvyaylG 118
                  +aG+ r+++ +F+l t +Gs +w+ +++ +G
   KIR63223.1 140 PAGANRMPLGEFVLLTTLGSGVWNALIVGAG 170
                  ***************************9988 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.027
  SNARE_assoc  30 Gaslayllgrylgrkalrrkllsekrvk 57 
                  +++++y++ +++g   +++++ ++ r +
   KIR63223.1 184 SSWFNYAIFAVFGV-MVVSWAAKKVRRR 210
                  67888888888884.3333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:02.63
# Mc/sec: 256.94
//
Query:       KIR63224.1  [L=193]
Description: hypothetical protein TK50_20415 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-54  184.9   0.0    1.2e-54  184.7   0.0    1.0  1  DUF1349   Protein of unknown function (DUF1349)
     0.0036   17.1   0.0     0.0042   16.8   0.0    1.1  1  GH43_C2   Beta xylosidase C-terminal Concanavalin A-like doma


Domain annotation for each model (and alignments):
>> DUF1349  Protein of unknown function (DUF1349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.7   0.0   1.4e-58   1.2e-54       1     174 [.      11     184 ..      11     188 .. 0.98

  Alignments for each domain:
  == domain 1  score: 184.7 bits;  conditional E-value: 1.4e-58
                 EES--SEEEE-.SSEEEEE--TT--EEESTTT--EEE--EEEEEEESS-EEEEEEEEE---STT-EEEEEEEEETTEEEEEEEEE-SSSEEEEEEEEES CS
     DUF1349   1 WlnePksveeseddsleittepktDfWrrthygfrrdnapflltevagdftaevkvkgefkelyDqaGlmlrvdeenWlKagieyndgaprlgsVvtng 99 
                 Wl++P + e ++d+ l ++ ++++DfWr+t+ygf +d++p+ll++  +   +ev ++++f+e++DqaG+++rvde++W+Kag+e++dg+ ++g+Vvt++
  KIR63224.1  11 WLHRPVRAEPTPDGGLVVEPGAGSDFWRHTSYGFVHDDGPALLAPLPAGSAVEVDFRLDFTEQFDQAGVLVRVDERTWVKAGVEVSDGEEQVGAVVTRE 109
                 *************************************************************************************************** PP

                 SEEEEEEE--SB..TTSEEEEEEEETTEEEEEEESSSS---EEEEEE--S-S-EEEEEEEE-SS-S--EEEEEEEE CS
     DUF1349 100 ysDwsvsplpsev.skevwlrlsrrgddlaieysldgenwkllRlfhldadeevkvGvyacsPkregfevtFsefe 174
                 +sDwsv+p+p+ +  ++v++r+sr gd+l++++++ +e w+l+R+++l++d e+++G+++csP+r g++vtF+ ++
  KIR63224.1 110 VSDWSVAPVPQ-WsGRTVSVRVSRAGDALTVRARAGDEPWRLVRVAPLAPDAEASAGPFCCSPTRGGLAVTFTGWR 184
                 **********5.669*********************************99***********************997 PP

>> GH43_C2  Beta xylosidase C-terminal Concanavalin A-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   4.7e-07    0.0042      60     158 ..      62     153 ..      43     184 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.7e-07
     GH43_C2  60 ftattklefepekegeeAGLvvyqneyhyyslevtkdekgkrvlrlvkadngeakeelkeekvplqtevkevyLrleveedkakfsysydgkeweeige 158
                 +++  +l+f+ +   ++AG  v  +e+++++ +v+ ++++++v  +v+++  +++      +vp  +  ++v +r+   +d+++++ +  ++ w+ +  
  KIR63224.1  62 VEVDFRLDFTEQF--DQAGVLVRVDERTWVKAGVEVSDGEEQVGAVVTREVSDWSVA----PVPQWS-GRTVSVRVSRAGDALTVRARAGDEPWRLVRV 153
                 5566677777776..99******************9999999999999998887653....455333.5889999999999999999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1281.84
//
Query:       KIR63225.1  [L=550]
Description: trehalose synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-70  236.1   0.0    7.7e-69  232.8   0.0    2.1  1  Alpha-amylase   Alpha amylase, catalytic domain
  ------ inclusion threshold ------
      0.012   14.7   0.0      0.017   14.2   0.0    1.1  1  hDGE_amylase    Glycogen debranching enzyme, glucanotransfera
       0.12   12.5   0.0       0.25   11.5   0.0    1.6  1  Malt_amylase_C  Maltogenic Amylase, C-terminal domain


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.8   0.0   1.3e-72   7.7e-69       1     332 [.      28     384 ..      28     387 .. 0.83

  Alignments for each domain:
  == domain 1  score: 232.8 bits;  conditional E-value: 1.3e-72
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSGGG CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifkspqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgepkr 96 
                    GD++G+i +LdYl  LGvt +wl Pi  sp+ d gYd++d++++dp+fGt  d+ eL+++a+++gi+vi+DlVvNHtsd+h wf+ +++++++p+r
     KIR63225.1  28 GDIRGLIGRLDYLARLGVTCLWLHPIHPSPNRDDGYDVTDFYNVDPRFGTLGDFAELLHQAQNRGIRVIIDLVVNHTSDQHPWFQSARSSPDSPYR 123
                    9*********************************************************************************************** PP

                    CCC-E......ESS-STTC-TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCCCCCCCCTTT-SEEEETTCCCTTTCCCC.HCCHCCH CS
  Alpha-amylase  97 dyyiwkegkeekeppnnwkslfdgsaweydekaqeyylhlflkklpdLnteneevrkelkdvvkfwlekgidGfRlDvvkhvskveal.esngefl 191
                    d+y+w + +  + ++      ++++ w+yd +a+ +y h f+k +pdLn  n +vr e+k++v+fwl+ g++GfR+D+v+ + + ++  + + ++ 
     KIR63225.1 124 DWYVWADHEPADRHQGMVFPGEQNETWTYDRTAKAWYYHRFYKYQPDLNFANLQVRAEVKKIVSFWLQLGVSGFRMDAVPFIIELTEPgNPDSPKD 219
                    *****9886555555555458899**********************************************************99555576667777 PP

                    HHHHHHHHHHTC.CGTT-EEEEE-TT-SCCCHCCCC-CGG-SIC...ECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-CCCTTCEEE CS
  Alpha-amylase 192 heftqalnetva.srkevmtvgEvssdasedlrvyttearlele...mvldfphldvaqkakikeqlksisakklkellkkwlkaleeaaeeavtf 283
                     ef ++l + v+  r ++++++E + + +e l +   ++  + +   m++df+ ++     +   +l+  + + + e+l++  + l+ +  + +tf
     KIR63225.1 220 FEFLTELRQHVQwRRGDAVLLAEANVEPDE-LPTFFGDGSGSGNrihMLFDFMLNG-----RLMLALARRDPEPVIEALRDTPT-LP-TGGQWATF 307
                    7788888877777899*******9997665.4444444444444000333333333.....32345566555556666655544.33.4677789* PP

                    S--TTS--HHHHTTSSTTTT............................HHHHHHHHHCCCTSSSEEEEETTCCCT-- CS
  Alpha-amylase 284 lgnHDqeRilsrlgddsaea............................ekklklaaillltlrGvpviYyGeEigmt 332
                    l nHD   +   ++ ++ +                              ++++la +l+++lrG+pv  yGeEigm 
     KIR63225.1 308 LRNHDEIDLSRLTAAQRDQVyaefgpeehmriydrgirrrlapmlgndRRRVELAYALQFSLRGTPVLRYGEEIGMG 384
                    ****98665555555553335689***********************999*************************95 PP

>> hDGE_amylase  Glycogen debranching enzyme, glucanotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.8e-06     0.017      30     118 ..      39     122 ..      27     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.8e-06
                   HHHHTT--EEEES--EEE-TT--TTSEEEEEEE-TTT-.....SSC.HHHHHHHHHHHHHH--EEEEEE--SEEETT-CCCCC...-GGGS- CS
  hDGE_amylase  30 eikekgYnmiHftPlqelGesnSpYSiadqleldkelfeekdkeekeedveklvkklekeygllsltDvVlnHtannskwlee...hPeagY 118
                     ++ g +++ + P++   + +  Y ++d  ++d+++        +  d+++l+++++ + g+  ++D+V nHt+++ +w ++    P++ Y
    KIR63225.1  39 YLARLGVTCLWLHPIHPSPNRDDGYDVTDFYNVDPRFG-------TLGDFAELLHQAQ-NRGIRVIIDLVVNHTSDQHPWFQSarsSPDSPY 122
                   56666777777788888888888888888888888874.......5678999999876.579******************985222577766 PP

>> Malt_amylase_C  Maltogenic Amylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.2e-05      0.25      13      75 .]     477     541 ..     464     541 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.2e-05
                     EEEEEEEETTEEEEEEEESS-EEEEE--G..GGTT-EEEETTTTEE-----SSEEEEE-TT-EEE CS
  Malt_amylase_C  13 vlaYlReyedetilvvaNrsaqaveldls..elagrvpvelfggeefpaigelytltLppygfyw 75 
                     vla     ++ t++ + N    +ve+dl   + +   p +++++ ++  +g+l  l+L+ yg++w
      KIR63225.1 477 VLAHRADGPTGTMVFLHNLGTDDVEVDLGmlAAEADLPLDVLTDRNYGEVGKLDSLKLAGYGYRW 541
                     55555555567899999999*********99999******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 3373.81
//
Query:       KIR63226.1  [L=252]
Description: 3-oxoacyl-ACP reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-64  215.4   9.6    8.8e-64  215.3   9.6    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    8.2e-53  178.8   6.0      1e-52  178.5   6.0    1.1  1  adh_short     short chain dehydrogenase
    6.6e-19   68.5   3.9      1e-18   67.9   3.9    1.3  1  KR            KR domain
      0.003   17.0   0.6     0.0049   16.3   0.6    1.4  1  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3   9.6     2e-67   8.8e-64       1     232 [.      12     249 ..      12     251 .. 0.96

  Alignments for each domain:
  == domain 1  score: 215.3 bits;  conditional E-value: 2e-67
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Gaa+gIG+a+A++la+ G  v+++d++e+a +++v+++++++g+++ + +DV+d+ qv+a+ve+v++++g   +lvnnag+ ++  + + +++++++
    KIR63226.1  12 GAARGIGAATARRLAADGLAVAVVDIDEAAtADTVDAIVAAGGRAIgVGADVADRPQVTAAVERVAAELGAPTVLVNNAGVLRD--NLLFKMTDADW 106
                   9********************************************99*************************************..*********** PP

                   HHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT.....H CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg.....f 185
                   d+++ v l+++fl+++aa+++m e+  g+ivnlss++a  +  +++ y+aaKa+l+++t++lA elgp g++vNav+pg+i T+++++ +      f
    KIR63226.1 107 DTVMGVHLRGAFLFSQAAQQHMVERrwGRIVNLSSTSA-LGNRGQANYAAAKAGLQGFTKTLAIELGPFGVTVNAVAPGFIVTDMTAATAArmkvdF 202
                   ********************8877668*********77.8999999***************************************777665566679 PP

                   HHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 186 delleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                   ++l++++e+++p++r+g+pe+va+++ fL+s+ as+++Gq+++v gG
    KIR63226.1 203 EALQKHAESEIPVRRVGRPEDVAHTISFLVSEGASFVSGQVVYVAGG 249
                   99********************************************9 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.5   6.0   2.2e-56     1e-52       2     191 ..       7     195 ..       6     199 .. 0.98

  Alignments for each domain:
  == domain 1  score: 178.5 bits;  conditional E-value: 2.2e-56
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 v++vtGa++GIG a+a++la++G  v+vvd+ e++ + +++ + ++g +a+ + +Dv+dr +v a+ve+++++lg   vLvnNAG+ +++   ++++++
  KIR63226.1   7 VAIVTGAARGIGAATARRLAADGLAVAVVDIDEAATADTVDAIVAAGGRAIGVGADVADRPQVTAAVERVAAELGAPTVLVNNAGVLRDNLLFKMTDAD 105
                 89************************************************************************************************* PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 w+ v+ v l g+fl ++a+ ++m+++++GrIvn sS+ +  ++ g+a Y+A+Ka+++g+t++la el p g++vnavaPG++ Tdm++++ 
  KIR63226.1 106 WDTVMGVHLRGAFLFSQAAQQHMVERRWGRIVNLSSTSA-LGNRGQANYAAAKAGLQGFTKTLAIELGPFGVTVNAVAPGFIVTDMTAATA 195
                 ************************************999.899*******************************************98775 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   3.9   2.3e-22     1e-18       4     162 ..       9     166 ..       7     181 .. 0.89

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 2.3e-22
                 EEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   4 litGGlGgLGlelarwlaekg.arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 ++tG++ g+G ++ar la++g a  +v +      +++ +++++++ a g +   v aDv+d+ +v+a++e++ ae ++ +  ++ Agvlrd+ll +mt
  KIR63226.1   9 IVTGAARGIGAATARRLAADGlAVAVVDID-----EAATADTVDAIVAAGGRAIGVGADVADRPQVTAAVERVAAELGAPTVLVNNAGVLRDNLLFKMT 102
                 8********************454444443.....345566899999**99999***********************99999***************** PP

                 HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaey 162
                 ++d+++v+   ++Ga    ++ ++    ++   +v +SS ++ lg++gqanYaaa a l ++ ++
  KIR63226.1 103 DADWDTVMGVHLRGAFLFSQAAQQhmveRRWGRIVNLSSTSA-LGNRGQANYAAAKAGLQGFTKT 166
                 ***********************9676667778999999987.9************999988765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.6   1.1e-06    0.0049       2     121 ..       9     147 ..       8     161 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.1e-06
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-..STTTTCHHCHHC......EEEE--TT-HH....HHHHHHHHH.T-SEEEE--S---HHH..HHHSH. CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrl..ssasntarledl......elveldltdrs....alerlfkee.qpdavihlAavggvaa..ssedp. 84 
                 +VtGa+  iG+a++++l++ g  v ++d +   +a+   ++  +        v +d+ dr     a+er+ +e  +p++ ++ A+v   +   +++d+ 
  KIR63226.1   9 IVTGAARGIGAATARRLAADGLAVAVVDIDeaATADTVDAI--VaaggraIGVGADVADRPqvtaAVERVAAELgAPTVLVNNAGVLRDNLlfKMTDAd 105
                 8********************66666666600444444444..266***9999******9966667777778877888888888843333201222221 PP

                 HHHHH.HHTHHHHHHHHHHHHHTCT....EEEEEEEGGGGTS CS
   Epimerase  85 adfie.knlqgtlnlleaarkagvk....rllflsSsevYGk 121
                  d+++  +l+g+    +aa+++ v+    r+++lsS++  G+
  KIR63226.1 106 WDTVMgVHLRGAFLFSQAAQQHMVErrwgRIVNLSSTSALGN 147
                 333333777777778888888877777778888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1858.29
//
Query:       KIR63227.1  [L=136]
Description: integral membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0027   17.7   1.5     0.0034   17.3   1.5    1.1  1  7TMR-DISM_7TM  7TM diverse intracellular signalling


Domain annotation for each model (and alignments):
>> 7TMR-DISM_7TM  7TM diverse intracellular signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.5   1.9e-07    0.0034      99     192 ..      18     118 ..       9     127 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.9e-07
  7TMR-DISM_7TM  99 lllllavllsllllllpllpyteslslaq.....llallvillllligikawrkgnkparyfliawlllligvlidi.lsllg..llpsn.fftey 185
                    ll+++++l  +++++++    + ++++a      ll++l++l+ +++++ ++r g+ + r  l++ ++ l+gv+    lsl +  l+p   +++ +
     KIR63227.1  18 LLIAVYLL--FAIAATSRAGLQIATRFAEapvayLLSALAALVYIVAAVGLARAGHAGRRVALACCSVELVGVVGVGlLSLADpeLFPDEtVWSGF 111
                    45555555..333333333444444444444333788888888888888888****************9999998652556669999999777779 PP

  7TMR-DISM_7TM 186 llqigvl 192
                    ++ +g++
     KIR63227.1 112 GSGYGYV 118
                    9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 995.22
//
Query:       KIR63228.1  [L=140]
Description: hypothetical protein TK50_20435 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        3.6    7.5  10.8        8.7    6.2  10.1    1.9  1  DUF5134   Domain of unknown function (DUF5134)


Domain annotation for each model (and alignments):
>> DUF5134  Domain of unknown function (DUF5134)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  10.1   0.00049       8.7      31     109 ..      22     105 ..       5     131 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00049
     DUF5134  31 gq....lavvfalaalwflvlavvrrrataarrlahlyhavmmlAMvyMaaamalaaggghsghaaagasmpgg..........vplvtgvla 109
                 g+     +v+ +++a w+lv+av++r      r++ +  av  lA +  a++  +a ggg          +pg+          +p++++vla
  KIR63228.1  22 GVlataTIVLSLVLAGWALVAAVRNRP---PDRVQLAGLAVLELALLALAVVALVALGGGE------RPGEPGAffgylvtlvcLPPLAWVLA 105
                 322344589999999999999997663...3444444444444444444433311111111......11124445555666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 931.41
//
Query:       KIR63229.1  [L=70]
Description: prevent-host-death protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00028   20.6   0.5    0.00037   20.3   0.4    1.3  1  PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin 


Domain annotation for each model (and alignments):
>> PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.4     2e-08   0.00037      27      67 ..      12      51 ..       1      60 [. 0.85

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2e-08
                     EEEEETTEEEEEEEEHHHHHHHHH.HHHHHCSHHHHHHHHH CS
  PhdYeFM_antitox 27 viItrrGkpvaVlvsleeyerlqeltekllslplnaerlae 67
                       ItrrG   a +v++e  e++++  e+  +  +++e l +
       KIR63229.1 12 TYITRRGQRLAAIVPVELAEAIER-AEDASDVAAAREALDR 51
                     68**********************.9999999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 506.32
//
Query:       KIR63230.1  [L=263]
Description: rRNA adenine methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-37  128.3   0.0    2.9e-37  128.2   0.0    1.0  1  RrnaAD           Ribosomal RNA adenine dimethylase
    6.3e-05   23.6   0.0    0.00014   22.5   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
     0.0061   17.2   0.0      0.014   16.1   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.038   14.7   0.0      0.072   13.8   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
       0.13   12.1   0.0       0.31   10.8   0.0    1.6  2  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.2   0.0   8.2e-41   2.9e-37       3     260 ..      13     259 ..      11     263 .] 0.96

  Alignments for each domain:
  == domain 1  score: 128.2 bits;  conditional E-value: 8.2e-41
                 CCXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHHHHHHCTTTCCC CS
      RrnaAD   3 klrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvhqDflkfetpeevtekdsih 101
                 + r+ ++qnfl ++  +++I+ ++ + + + +le+g+G G lT+ La r+  +v++E+d++ a+ l  +  + + +++  +Dfl ++ p          
  KIR63230.1  13 RSRRVLSQNFLADPAAVARIVAAARPAPGDLLLEVGAGRGRLTRALAARCGRLVAYEIDPVAAADLAVTCADLPGVTLRRADFLAADPPA--------- 102
                 578899**************************************************************999*******************......... PP

                 CEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHHHEEEEEEEEC-GGCECS--SSSEEEEEEEE-SS-S.- CS
      RrnaAD 102 qeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefarrllarpgskkrsrlsvlreaftdvklvakveksifsPppkvdsalvelerkdedl.p 199
                 ++f+vv+n+P  ++ + v ++l + r   + ++l++q e ar++++  g  ++srl+vl++    ++l  +v++++f+P p+vd  +++l+r++e+l p
  KIR63230.1 103 EPFAVVGNIPWSLTAAVVRWCLAADRL--RSATLLTQLEYARKRTGHAG--RWSRLTVLTWPGYAWRLAGTVPRTAFRPVPRVDAGILRLDRRAEPLlP 197
                 9*********************98888..9*****************99..************************************************ PP

                 -S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT..T--TTTCCCCSGHHHHHHHH CS
      RrnaAD 200 qkdlkkyesvvrkllnrkrktlstslksllpggelqalsst.gindnalvkklsaeqtldif 260
                   +++ y+++v+  +      + +sl++  p+++++a+    +++ +al  ++ +eq++++ 
  KIR63230.1 198 PGEWPAYRRLVEVGFGGVGGGVAASLSRHRPRARVDAALRAvRLDRDALPSEVWPEQWITLH 259
                 **************************************999999999999999999998875 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   3.8e-08   0.00014       2      68 ..      45     108 ..      44     120 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.8e-08
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlv 68 
                      L++G+G+Grlt+ala+r+  +++++ +i++ + +  +  +++  + v+++++d+ + + +++ f +v
       KIR63230.1  45 LEVGAGRGRLTRALAARC--GRLVAYEIDPVAAADLAVTCADL-PGVTLRRADFLAADPPAEPFAVV 108
                      9****************9..8***********99999999654.69********9999999999887 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.8e-06     0.014       1      51 [.      45      94 ..      45     108 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.8e-06
                     EEET-TTSHHHHHHHHTTSEEEEEES-HHHH.HHHHHHCCHHT-EEEETTEE CS
  Methyltransf_11  1 LdvGcGtGrlaealakrgarvvgvDlskeml.klakekaseeglkvefvvad 51
                     L+vG+G+Grl++ala r++r+v+ ++++ +  +la ++a  +g  v++++ad
       KIR63230.1 45 LEVGAGRGRLTRALAARCGRLVAYEIDPVAAaDLAVTCADLPG--VTLRRAD 94
                     89************************99887445555555555..5555555 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     2e-05     0.072       1      45 [.      45      87 ..      45     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
  Methyltransf_12  1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakren 45
                     Le+G+G G+l+ral+++    ++++++i+p a +d +   a+  +
       KIR63230.1 45 LEVGAGRGRLTRALAAR--CGRLVAYEIDPVAAADLAVTCADLPG 87
                     8****************..99999999999998776665555555 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.7e-05      0.31      15      59 ..      31      77 ..      11     112 .. 0.71
   2 ?   -2.1   0.0      0.84     3e+03     123     148 ..     128     153 ..     116     158 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.7e-05
  Methyltransf_23 15 rll..pklraggrvLdiGcGtGillevlrengfsvtgvDlspeavei 59
                     r++  ++  +g  +L++G+G G+l++ l+++   +++++++p+a + 
       KIR63230.1 31 RIVaaARPAPGDLLLEVGAGRGRLTRALAARCGRLVAYEIDPVAAAD 77
                     444213456666799*************8885589999998876654 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.84
  Methyltransf_23 123 slkedrllldwlylvpagrhisffsa 148
                      +l ++ ll + +y++++ +h   +s+
       KIR63230.1 128 RLRSATLLTQLEYARKRTGHAGRWSR 153
                      44678889999999999999877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1961.32
//
Query:       KIR63231.1  [L=418]
Description: protein-L-isoaspartate O-methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.4e-109  366.3   2.4   2.8e-109  366.1   2.4    1.0  1  Erythro_esteras  Erythromycin esterase


Domain annotation for each model (and alignments):
>> Erythro_esteras  Erythromycin esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  366.1   2.4  1.6e-113  2.8e-109       1     344 []      49     396 ..      49     396 .. 0.93

  Alignments for each domain:
  == domain 1  score: 366.1 bits;  conditional E-value: 1.6e-113
                      HHHC---EEEEEEEHHHHHHHHHHHHHS-...S-GGGT.......S-CCC-CHHHHHHHHHHHHHHHSTT-SS--EEEEEE-S---HHHHHHHH CS
  Erythro_esteras   1 veehGfrtvalEadwpdalrvdryvrggt...gdaeea....krfptwmWrneevlelveWlReyNagrpkkervrfyGlDlqslresldavld 87 
                      ++e+Gfr+va+E+dwpd++rv+r v+ ++    d+++a     r+ptwmW n+ev+++++WlR++N++rp ++r +f+GlD++sl+es++a+ d
       KIR63231.1  49 IAEQGFRFVAVEGDWPDCERVHRSVTAAPgglADPQAAlerfTRWPTWMWSNAEVARFCRWLRAWNQERPPQQRAGFHGLDVYSLWESMQAIFD 142
                      689**********************9888555444444999***************************************************** PP

                      HHHHCHCCCCHHHHHHHCCHGGCS.......TSSCCCCCHHHHHHHHHHHHCCHGGG.....GGTSHHHHHHHHHHHHHHHHHHHC.....CSS CS
  Erythro_esteras  88 yLakvdpelagaareryaclapla.dpraarsaeaaelrscedevvallkellakreeyaaedgeaeeffsaeqnarlvknaeryyra...gde 177
                      yL + +p+ ++aa+e+y+c++p++   +++  a +  + +ce+evv+ll++++++++    +dg   ++fsa qna++v++aeryyra   g +
       KIR63231.1 143 YLGEEEPASLEAAQEAYRCFEPYGrRIEEYGAASRFVSARCEEEVVRLLARTREQAA----ADG--PDRFSAWQNAEVVAGAERYYRAmmgGGP 230
                      ***********************6233333344455899************877765....677..679**********************99* PP

                      SSSCHHHHHHHHHHHHHHHHHHHH...HHSSEEEEEEHHHHSSS-STTTT-S...S-HHHHHHHHHGGG.EEEEEEEEEEEEEEEC-....... CS
  Erythro_esteras 178 eswnlrllalRDrhMaenleallehe.argkivvwAHNsHigdaratdmgkerg.lnaGqllrerlgde.yvaiGftfgtgtvaaasewgepme 268
                       swn      RD hMa++l++ll+++ ++++ +vwAHN+H+gdaratdm+ + g +n+Gql+rer+g++ +v++Gf+ ++gtv aa++wg+p+e
       KIR63231.1 231 HSWNV-----RDIHMADTLDRLLDFHgPGSRGIVWAHNTHVGDARATDMAAD-GmVNIGQLARERHGADaVVLVGFGSYRGTVVAAPRWGSPAE 318
                      *****.....*****************999********************76.56**************9************************ PP

                      EEEE----TTSHHHHHHCSS-SEEEEEG-.CHHHHHHEE............EEE---SB-BTTSHHHH-SEEEEEEEE CS
  Erythro_esteras 269 vmtvrppppgslEallhaagppdflldlrneelrewleeprleraiGv..rpeterqshyveaslaeqfDalifvdet 344
                      +m v+p++pgs+E++lh+  p++++l +  ++   w++e+  +ra+Gv  +p  e++++yv+++l e++Da++++det
       KIR63231.1 319 EMVVPPARPGSVERRLHELLPERAVLVFGGPDQPGWVTEEHDHRAVGVvyDPTFESWGNYVPTRLGERYDAFVWCDET 396
                      ****************************767899******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 2586.91
//
Query:       KIR63232.1  [L=63]
Description: hypothetical protein TK50_20465 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-15   56.2   0.0    3.5e-15   55.9   0.0    1.1  1  DUF2795   Protein of unknown function (DUF2795)


Domain annotation for each model (and alignments):
>> DUF2795  Protein of unknown function (DUF2795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   1.9e-19   3.5e-15       1      43 [.      12      54 ..      12      55 .. 0.99

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 1.9e-19
     DUF2795  1 LkgadyPatKdeLveyArrngApdevleaLeaLPdreYespae 43
                L+g+dyP+++++Lv++ ++ngA+ evl+ L aLP +e+ spae
  KIR63232.1 12 LAGLDYPVSREDLVRWGQENGASTEVLQMLHALPAEEFSSPAE 54
                89****************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 461.92
//
Query:       KIR63233.1  [L=742]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-92  309.6  42.6    8.4e-60  202.4  17.6    2.3  2  MMPL            MMPL family
    0.00088   19.1  20.0      0.001   18.9   2.3    2.7  3  Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activ
     0.0098   14.6   0.5      0.018   13.8   0.5    1.4  1  TLV_coat        ENV polyprotein (coat polyprotein)
  ------ inclusion threshold ------
       0.19   11.6   0.0       0.41   10.5   0.0    1.5  1  DUF3385         Domain of unknown function (DUF3385)


Domain annotation for each model (and alignments):
>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.4  17.6   1.9e-63   8.4e-60       2     319 ..      45     375 ..      44     386 .. 0.87
   2 !  112.7  17.0   3.7e-36   1.7e-32      52     319 ..     456     711 ..     433     722 .. 0.84

  Alignments for each domain:
  == domain 1  score: 202.4 bits;  conditional E-value: 1.9e-63
        MMPL   2 lspadaesvkamdrleaafpeeadsdkiivvvlaegdealgsaaaeaavdelvdelkkdtkhvgevsdflsdpdvaaafvSkDgkaaralvtlegdpgs 100
                 ++++++es++a+d+l+++fp  a++++  ++v+a+ d +l   + +a v++ v++  +  ++v  ++d+     ++++++S++g+ a ++v+++g  ++
  KIR63233.1  45 FTMPGTESQRAIDLLAERFPA-ASGATGTIAVKAPADGQLATPEGQALVKQ-VTQEAATLPGVVGAVDP-----YQSQAISPNGRYALIQVQFAG-RAD 135
                 6799*****************.999999999999******99555555555.55555777777778888.....8*******************7.799 PP

        MMPL 101 teadesvaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglel 199
                 + +d++ +a +++ e+a+  +g ++  +G  +  ++       +++ +e+++++v++++L+i+++Slvaa++ +l +++++++ ++   + al   +el
  KIR63233.1 136 DVTDAQRDAYEKVGEQAE-AQGWQIAPGGEVLGGEP-------EVGSTEALGVLVAAIVLVITFGSLVAAGMTMLNALIGVGVGMAG--LYALSGTIEL 224
                 999***************.**********9888888.......******************************************99..8899999*** PP

        MMPL 200 stfvlgllvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTllPAl 298
                 +++++ l+ +l++avG+DY l+++sR+r+ l +g + eeav rav+++g++v++aG+tv+ia++gL+v+++p+l+ +G+a+a +v v+vl+++Tl PAl
  KIR63233.1 225 TSTAPILALMLGLAVGIDYSLFITSRHRQHLIEGLSPEEAVGRAVGTAGSAVVFAGATVVIALAGLAVVDIPFLTVMGLAAAGTVTVAVLVAITLAPAL 323
                 *************************************************************************************************** PP

        MMPL 299 lvllGraa.lakprrkrkk..............................rwW 319
                 l ++G ++ + + rr+ ++                              ++W
  KIR63233.1 324 LGFAGHRVlPRRLRRAGSTaaapangspagdragsvaaeapaedrsgfgFRW 375
                 *******844444444433555555555555555555555555555555555 PP

  == domain 2  score: 112.7 bits;  conditional E-value: 3.7e-36
        MMPL  52 elvdelkkdtkhvgevsdflsdpdvaaafvSkDgkaaralvtlegdpgsteadesvaairaaveearpleglkvevtGpaatladlrdasdrdlkliev 150
                  +v++l + t++v +v+++          + + g++a + v  +  p +++++e v++ir+ v+  +   g++v +tG +a+  d+++  +  l +  +
  KIR63233.1 456 PQVAKLVQATDGVLAVAPP---------QTDPTGRTALLGVIPRSGPTDEATEELVHDIRRQVAGVD---GADVLLTGATAIGIDVSEKLSDALPVYLL 542
                 3333333333344444444.........666789999999999999*********************...***************************** PP

        MMPL 151 vtlvvilviLlivyrSlvaallplltvvvsllaalgl.vlilalllgle.........lstfvlgllvvlliavGtDYallLvsRyreelaagedreea 239
                 + + + +++L++v+rS++ ++   l  ++ ++a++g+ v++++     +         l +f + ll+ +l++ + DY ++LvsR+re   +g ++++a
  KIR63233.1 543 LVVGLSILLLMLVFRSILVPVKAALGFLLTVAATFGItVAVFQEGTLAGlvgldtpgpLVSFLPILLIGILFGLAMDYEVFLVSRMREDYVHGDTARQA 641
                 ********************99999999999999**9999999876654111112222568999*********************************** PP

        MMPL 240 viravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivl.TllPAllvllGraalakprrkrkkrwW 319
                  i  ++  ++vvtaa+l+++  + g+v+++ pv++++G+a+a Gv++d+++v+ T++PA+++ll  aa           wW
  KIR63233.1 642 TINGMGHGARVVTAAALIMISVFGGFVFLDDPVIKSMGFALAAGVAIDAFVVRmTIVPAVMSLLNTAA-----------WW 711
                 **************************************************9974777*******9996...........44 PP

>> Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   2.3   2.3e-07     0.001       9     145 ..     195     336 ..     187     342 .. 0.82
   2 ?   -2.4   0.2      0.82   3.7e+03     112     132 ..     539     559 ..     523     561 .. 0.57
   3 !    9.8   4.9   0.00015      0.67       6     135 ..     569     704 ..     564     707 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.3e-07
                     HHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHH....HHHCHHCCHHCHHHHHH.HHTTTCHHHHHHHHHHHHCCCCHHCCCHHHHHHH. CS
  Sterol-sensing   9 glagviivllsvasslgllaylgltltliilevlPflv....lavgvdnifvlvkavqr.tsrsldeseriaealgevgpsilltsltellall. 97 
                      +ag++++ + + + +g+  +  l+ t+  +  +P l+    lavg+d ++ ++  +++ + + l+ +e +++a+g++g +++   +t ++al+ 
      KIR63233.1 195 VAAGMTMLNALIGVGVGMAGLYALSGTIELTSTAPILAlmlgLAVGIDYSLFITSRHRQhLIEGLSPEEAVGRAVGTAGSAVVFAGATVVIALAg 289
                     5566666666677777777777777777777777777622225799**9999887775516677788***************************8 PP

                     HHHHCCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTXX CS
  Sterol-sensing  98 lgaltdvpavqeFclfaavavlvdFllqitfFvavLsldirreeserl 145
                     l+ ++d+p ++   l aa  v+v  l+ it+  a+L +   r++ +rl
      KIR63233.1 290 LA-VVDIPFLTVMGLAAAGTVTVAVLVAITLAPALLGFAGHRVLPRRL 336
                     88.9*********************************99999877666 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.82
                     HHHHHHHHHHHHHHHTHHHHH CS
  Sterol-sensing 112 lfaavavlvdFllqitfFvav 132
                     ++  + v ++ ll +++F ++
      KIR63233.1 539 VYLLLVVGLSILLLMLVFRSI 559
                     344555555555555555555 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00015
                     HHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH....CHHCCHHCHHHHHHHHTTTCH.HHHHHHHHHHHCCCCHHCCCHHHHH CS
  Sterol-sensing   6 fgLglagviivllsvasslgllaylgltltliilevlPflvlav....gvdnifvlvkavqrtsrslde.seriaealgevgpsilltsltella 95 
                     f+L++a+++ ++++v+   +l  ++gl++    +  lP l++ +     +d    lv  +++   + d   +   +++g+ +  +++ +l  + +
      KIR63233.1 569 FLLTVAATFGITVAVFQEGTLAGLVGLDTPGPLVSFLPILLIGIlfglAMDYEVFLVSRMREDYVHGDTaRQATINGMGHGARVVTAAALIMISV 663
                     89***************************9999999***99987554457755555555555555554449999********************* PP

                     HHHHHHCCHHHHHHHHHHHHHHHHHH.HHHHHTHHHHHHHH CS
  Sterol-sensing  96 lllgaltdvpavqeFclfaavavlvd.FllqitfFvavLsl 135
                     +   ++ d p++++  +  a +v++d F++ +t+  av+sl
      KIR63233.1 664 FGGFVFLDDPVIKSMGFALAAGVAIDaFVVRMTIVPAVMSL 704
                     *966799******98777777777775999*********98 PP

>> TLV_coat  ENV polyprotein (coat polyprotein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.5     4e-06     0.018     384     420 ..       8      43 ..       2      57 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4e-06
                 XXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXX CS
    TLV_coat 384 idepatRvkRepvaltlallLgGLgiaagvgtGttgl 420
                       R++R  va+   ++L+GLgiaa++ +G t++
  KIR63233.1   8 LGRASLRHRR-LVAVVWLVVLVGLGIAAATLRGPTAS 43 
                 5566789***.55555555566***********9997 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   9.2e-05      0.41      25      52 ..      93     120 ..      87     155 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.2e-05
     DUF3385  25 qsirrevikllGilGALDPykhkqveer 52 
                 +++ +e++ l G++GA+DPy+ + ++ +
  KIR63233.1  93 KQVTQEAATLPGVVGAVDPYQSQAISPN 120
                 57899****************9887644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 5039.95
//
Query:       KIR63234.1  [L=260]
Description: carboxyvinyl-carboxyphosphonate phosphorylmutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-75  253.7   3.0    1.8e-75  253.5   3.0    1.0  1  PEP_mutase       Phosphoenolpyruvate phosphomutase
  ------ inclusion threshold ------
      0.012   15.0   0.0      0.025   13.9   0.0    1.6  1  TMP-TENI         Thiamine monophosphate synthase
      0.018   14.5   0.0      0.031   13.7   0.0    1.4  1  Pantoate_transf  Ketopantoate hydroxymethyltransferase


Domain annotation for each model (and alignments):
>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.5   3.0   2.9e-79   1.8e-75       1     232 [.      15     246 ..      15     253 .. 0.96

  Alignments for each domain:
  == domain 1  score: 253.5 bits;  conditional E-value: 2.9e-79
  PEP_mutase   1 lraLhakgeplvlpnawDalsakiveeagfkalatsSlavaaslGvpDgeelpleellaavraiaevvslPlivDledGygespeevaetvrrliaaGv 99 
                 lraLh++g+plvlpnawDa+sa++v +agf a+atsS+ava slG++Dge++p+ee++aav++++++v +P+++Dle Gyg sp   ae v+r++aaGv
  KIR63234.1  15 LRALHKSGDPLVLPNAWDAGSARAVVAAGFAAVATSSAAVAESLGYADGEATPVEEMFAAVARMVRAVPVPVTADLERGYGLSP---AELVERMLAAGV 110
                 799*******************************************************************************88...999********* PP

  PEP_mutase 100 vgvniEDkkknd.aerqlldieefaekiaaaraaaeeag..fvinARtdalll...sagagleeaieRaraYaeAGAdgvfvpglqkdaeiaelvaavd 192
                 vg+n+ED+   d +++ l+d+ee+ae +aa+raaa++ag  +v+nAR+d +l+   +++++ +eai+R+r+Y +AGAd+v+ + l +++ iaelv+avd
  KIR63234.1 111 VGCNLEDS---DpRTGALYDAEEQAELLAAVRAAADAAGvpLVLNARIDLYLRgagDPDGRTAEAIRRGRLYRAAGADCVYPIFLAEPERIAELVSAVD 206
                 ********...54799999**********************************9999999*************************************** PP

  PEP_mutase 193 vplnvvplkgtlsvaelaelGvarislgnhllraalaalr 232
                 +p+nv  ++g +s+aela lGvar+s+g+ ++r+  a ++
  KIR63234.1 207 APVNVGFKPGGPSLAELAGLGVARVSFGPGPYRVSQARIA 246
                 *******9999**********************9988776 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.2e-06     0.025      16      70 ..      99     159 ..      84     164 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.2e-06
    TMP-TENI  16 levveealkggvtlvqlReke......ldarellelaeklaalcrkygvpliindrvdlal 70 
                 +e+ve++l++gv    l + +       da+e +el  +++a+++++gvpl++n r+dl l
  KIR63234.1  99 AELVERMLAAGVVGCNLEDSDprtgalYDAEEQAELLAAVRAAADAAGVPLVLNARIDLYL 159
                 6899999999999999999955555558999***************************976 PP

>> Pantoate_transf  Ketopantoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.1e-06     0.031       5      83 ..      13      90 ..      10     108 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.1e-06
  Pantoate_transf  5 kdlrkmkeegekiamlTaydattAklvdeagvdviLVGDslgmvvlgyestlpvtleemiyhtkaVargakralvvadl 83
                     ++lr+++++g++++   a+da +A++v +ag  ++  + ++    lgy++     +eem   ++  +r++    v adl
       KIR63234.1 13 DALRALHKSGDPLVLPNAWDAGSARAVVAAGFAAVATSSAAVAESLGYADGEATPVEEMFAAVARMVRAV-PVPVTADL 90
                     579999***************************999999999999****************999999994.45566776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1750.98
//
Query:       KIR63235.1  [L=321]
Description: ATP-dependent DNA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.074   13.1   0.0       0.13   12.3   0.0    1.4  1  DNA_primase_S  DNA primase small subunit


Domain annotation for each model (and alignments):
>> DNA_primase_S  DNA primase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.3e-06      0.13      22      72 ..     141     189 ..     130     225 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.3e-06
                    HHHHHHHHHHHHHH-----GGGEEEEE--SEEEEEEE--TTEEES-HHHHH CS
  DNA_primase_S  22 kfvsvavkvldellredfgfkdilwvfsgrrGfHcwvsdkdarpltdeera 72 
                     +++ a+++++++l  d+g     + +sg +G+H++v+ + a +  ++ +a
     KIR63235.1 141 GVAVAAARLVRQAL-ADVGLA-GAVKTSGAKGLHVLVPVDGATSAEEAAAA 189
                    567899********.9***96.******************88866544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2238.81
//
Query:       KIR63236.1  [L=388]
Description: FAD-dependent oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-17   64.2   8.7    2.9e-09   36.6   0.5    2.5  2  FAD_binding_3  FAD binding domain
    0.00041   20.5   0.2     0.0015   18.8   0.2    2.0  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.017   14.4   0.2      0.036   13.3   0.2    1.6  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
       0.13   11.3   0.0        1.6    7.7   0.0    2.0  2  SE             Squalene epoxidase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   2.2   3.7e-11   1.6e-07       4     173 ..       6     167 ..       2     190 .. 0.79
   2 !   36.6   0.5   6.6e-13   2.9e-09     285     347 ..     299     359 ..     269     361 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 3.7e-11
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EE...EHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHH.CHHC CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradgl...nqrtmellrqlGledrilaegapnelmgealynelsdtpkaradle.less 95 
                    + IVG+G+ Gl+la++L+ +G+  ++ e+ s     +++++l   +      lr +Gl +++l+    + + + +   +    ++  a+l+ ++ +
     KIR63236.1   6 IGIVGGGLGGLTLARVLHVHGIPATVYERDSAPDARTQGGMLdihQHNGQVALRAAGLHEQFLRLV--HPGGQAVRVLD----RHGTAHLDeADEG 95 
                    34***********************************998862213445557************99..66644444444....3556666655666 PP

                    ST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHT CS
  FAD_binding_3  96 pervtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlg 173
                      +   ++   l r+L+++    +  +vr++  +++ ++ ++g + e++    g   t + + lvGaDG++S++r  + 
     KIR63236.1  96 DGDRPEVNRGHLRRLLLDS---LPeGTVRWGGGITAARALGDG-RHELTLAGGG---TATTDLLVGADGAWSRIRPLVS 167
                    67777789999*******9...565889999999999999998.4445544444...5589**************8776 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 6.6e-13
                    TEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHH CS
  FAD_binding_3 285 rvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvd 347
                     v l GDAaH ++P +G G N+a+ D  +L+++Laa+      e+ L +Ye+   ++a+ + +
     KIR63236.1 299 GVTLLGDAAHLMSPFAGEGANLAMLDGAELGRALAAHPD--DVETALAAYERALFPRAETAAR 359
                    5889********************************988..7888899999888888877665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   3.3e-07    0.0015       1      30 [.       8      37 ..       8      61 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.3e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr 30
                   IvG+Gl+Gl++A+ L+ +g+  +++e+ + 
     KIR63236.1  8 IVGGGLGGLTLARVLHVHGIPATVYERDSA 37
                   9*************************9865 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2     8e-06     0.036       4     152 ..       7     201 ..       4     202 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8e-06
                  EEE--SHHHHHHHHHHHHHTS-EEEEE..................TTHCHHHCSHHHHCHHHHHHHHHHHHH.......................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
  Pyr_redox_2   4 vviGgGpAGlaaaltlaqagakvtlve..................legtclnggcllskallgvaedaeias.......................... 57 
                   ++GgG +Gl++a+ l  +g+  t++e                   +g++ ++   l++ +l+  +++ +a                           
   KIR63236.1   7 GIVGGGLGGLTLARVLHVHGIPATVYErdsapdartqggmldihqHNGQVALRAAGLHEQFLRLVHPGGQAVrvldrhgtahldeadegdgdrpevnr 104
                  59************************777665555544553333333334444444455555555555544488888888888888888888887777 PP

                  .....HHHHCHHHH.CCCCHCCT.CEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE-BC.TCTTC.TTBEECCSECHHHHHHCCSS-TSEEEE CS
                  .....xxxxxxxxx.xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 .....evvkklnqg.ielllgee.vvkidpgkkkvklekkkegdeekiaydklvlAtGssprdl.gipGvaenvgklvrtldsaealklkllpkrivv 147
                         +++l +g +++  g + + ++  g+++++l       + + + d lv A G+++r+   + ++a+ ++ l + ++ +    +   p++++ 
   KIR63236.1 105 ghlrrLLLDSLPEGtVRWGGGITaARALGDGRHELTL-----AGGGTATTDLLVGADGAWSRIRpLVSAAAPAYCGL-SFVEATLLDADRRHPAQAAL 196
                  7777755566666666666664434444455566666.....44568999999999999776652555666666666.88888888888888899999 PP

                  ES-SH CS
                  xxxxx RF
  Pyr_redox_2 148 vGgGy 152
                  vG+G+
   KIR63236.1 197 VGSGM 201
                  99986 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.034   1.5e+02       3      49 ..     150     197 ..     148     205 .. 0.76
   2 ?    7.7   0.0   0.00035       1.6     127     168 ..     295     336 ..     271     352 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.034
          SE   3 kltvvcDGifsklRkels.dnkvevtssfvGlvlknaelpkknkghvi 49 
                  l v +DG +s++R  +s    +    sfv  +l +a+  ++ ++ ++
  KIR63236.1 150 DLLVGADGAWSRIRPLVSaAAPAYCGLSFVEATLLDADRRHPAQAALV 197
                 577899********9999566667778888888888888887777666 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00035
          SE 127 nekkGlillGDalnmRHPltggGmtvalnDivllskllkple 168
                  ++ G+ llGDa  +  P  g G   a+ D + l + l   +
  KIR63236.1 295 DRVPGVTLLGDAAHLMSPFAGEGANLAMLDGAELGRALAAHP 336
                 5679*************************9998888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2663.91
//
Query:       KIR63237.1  [L=230]
Description: transposase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-09   37.3   0.2    2.9e-09   36.4   0.2    1.5  1  HTH_33    Winged helix-turn helix
     0.0027   18.3   1.6      0.004   17.7   0.3    2.0  2  HTH_32    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.2   3.3e-13   2.9e-09       2      57 ..      66     121 ..      65     124 .. 0.96

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 3.3e-13
      HTH_33   2 fgrWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpeaqeafk 57 
                  ++Wt++ l++l+++rf+ +     v+ +L+ +G+ ++ Pr ra+     a+e++ 
  KIR63237.1  66 EELWTRQSLTTLVQRRFDPRADAGAVGAYLRAWGLGPREPRERACGLCVGAVERWV 121
                 689****************************************************7 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.3   4.5e-07     0.004       2      60 ..      12      82 ..      11      95 .. 0.80
   2 ?   -2.4   0.0      0.85   7.6e+03      18      21 ..     117     120 ..      98     139 .. 0.56

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.5e-07
      HTH_32  2 vsrwlkRyneeG...legLkdrprrgrprklsdevrariiallre.ep........rWsprqlaarlaere 60
                v  w++R+  +G   ++++++ +r+g p  ls e++ ++i++lr  +p         W+ + l   +++r+
  KIR63237.1 12 VTSWCRRHTIGGdgtVAAVRRGQRQGEPGALSREQELELIDVLRGvHPdefgldeeLWTRQSLTTLVQRRF 82
                789****9866543466777778888999**************8567899999999**9999999887766 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.85
      HTH_32  18 kdrp 21 
                  +r+
  KIR63237.1 117 VERW 120
                 3332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1488.32
//
Query:       KIR63238.1  [L=225]
Description: hypothetical protein TK50_20515 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-43  146.8   3.7    6.3e-43  146.5   3.7    1.1  1  DUF305    Domain of unknown function (DUF305)
      1e-06   29.1   0.0    1.1e-05   25.7   0.0    2.0  1  DUF4142   Domain of unknown function (DUF4142)
  ------ inclusion threshold ------
       0.93    9.4   4.2        1.8    8.5   4.2    1.4  1  MadM      Malonate/sodium symporter MadM subunit


Domain annotation for each model (and alignments):
>> DUF305  Domain of unknown function (DUF305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.5   3.7   1.1e-46   6.3e-43       2     150 ..      65     217 ..      64     219 .. 0.95

  Alignments for each domain:
  == domain 1  score: 146.5 bits;  conditional E-value: 1.1e-46
                 HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHT---...........-----HHHHHHTT---HHHHHHHHHS.-H CS
      DUF305   2 vaFaqdMipHhqqAvemaelaleraedpevralAqdIaaaQqaeiaemqgwleawgqpassag...egeaaeaseaeeaampgmaseaelaalraa.sg 96 
                 ++Fa+dM +Hh+qAvem+ +a+++++d+ev +++ dIa+ Qq ei++mq+wl++wg +++ ++   +   + a+++++  mpgma+++++a+lr+  +g
  KIR63238.1  65 AGFARDMTTHHAQAVEMGLIAFQQGTDAEVVSIGGDIATGQQGEIGTMQTWLRSWGLDPTGSQprmAWMPDGAASMKNGLMPGMATPEQMAKLRDTpRG 163
                 79*********************************************************9999888788899999999***************986479 PP

                 HHHHHHHHHHHHHHHHHHHHHHGGGG-----HHHHHHHHHHHHHHHHHHHHHHH CS
      DUF305  97 adfdrlFlelMirhHqgavemaeaalekgedpevrelaeaiieaQqaEieqmqe 150
                 ++ d+lFle+Mi+hH g+v+m +  l+ ++dpev + a+++ ++Qq++++++++
  KIR63238.1 164 REKDVLFLEMMIQHHLGGVHMIDGILDASDDPEVVRVAQTMKNTQQTDLTNLTA 217
                 ************************************************999876 PP

>> DUF4142  Domain of unknown function (DUF4142)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.9e-09   1.1e-05       3     135 ..      64     214 ..      62     218 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.9e-09
     DUF4142   3 daeflakaaaaglfeveaaklAlqkaknpevkaFAqqmvadhtkaneeLkalaskkgvtlpd.................steldaeaqakldkLkal.s 83 
                 +a f++++++ ++  ve++ +A q+++++ev + +  + + ++     ++++ ++ g++++                     +  +  ++++kL+ + +
  KIR63238.1  64 EAGFARDMTTHHAQAVEMGLIAFQQGTDAEVVSIGGDIATGQQGEIGTMQTWLRSWGLDPTGsqprmawmpdgaasmknGLMPGMATPEQMAKLRDTpR 162
                 6889**************************************************999988887776555555544443222334445556699998889 PP

     DUF4142  84 gaaFDkaYleaqvaahqkavellekaaasgkdaelkafaektlptlqaHlee 135
                 g++ D  +le++++ h   v++++   ++ +d+e+ ++a+++++t q+ l+ 
  KIR63238.1 163 GREKDVLFLEMMIQHHLGGVHMIDGILDASDDPEVVRVAQTMKNTQQTDLTN 214
                 ********************************************99998876 PP

>> MadM  Malonate/sodium symporter MadM subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.2    0.0003       1.8      44      59 .]      37      52 ..      31      52 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0003
        MadM 44 AIllGLvlAYiGGvvT 59
                A+++GL+l Y GG++T
  KIR63238.1 37 AVVVGLLLGYAGGLLT 52
                99************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1436.51
//
Query:       KIR63239.1  [L=271]
Description: hypothetical protein TK50_20520 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-45  153.1   0.1    6.2e-45  152.5   0.1    1.1  1  DUF3105   Protein of unknown function (DUF3105)


Domain annotation for each model (and alignments):
>> DUF3105  Protein of unknown function (DUF3105)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5   0.1   3.5e-49   6.2e-45       4     122 ..     127     244 ..     125     249 .. 0.93

  Alignments for each domain:
  == domain 1  score: 152.5 bits;  conditional E-value: 3.5e-49
     DUF3105   4 agesvaYkqspPssGphrptwancgekvYdkpvpnenaVHnLehGavvllYdpklpaeqvekLkklvkaalaeksyvlvsPyedldkpvalsaWgrqlk 102
                 ++ s++Y+qspP+ Gph++tw+nc+++vYd+p+ ne+aVH+LehGav+++Y+p+lpa+qv+kLk++v+    +++++++sP+e++dkp++l+aWg+qlk
  KIR63239.1 127 QQGSIKYAQSPPVAGPHNATWQNCMGNVYDAPIANEHAVHSLEHGAVWITYRPDLPADQVAKLKSKVE----GQEKLMLSPFEGQDKPISLQAWGYQLK 221
                 4589****************************************************************....7778*********************** PP

     DUF3105 103 ldsvddervkeFiekyaqk...t 122
                 +d++dd+r++eFi++++ +   +
  KIR63239.1 222 VDNADDSRIDEFIKTLRVNasiE 244
                 ***************99884443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1920.10
//
Query:       KIR63240.1  [L=554]
Description: arginyl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-36  122.9   0.0    1.4e-35  122.1   0.0    1.5  1  DALR_1           DALR anticodon binding domain
    9.7e-21   74.2   0.0      2e-20   73.2   0.0    1.6  1  Arg_tRNA_synt_N  Arginyl tRNA synthetase N terminal domain
    2.8e-16   59.4   0.0    9.8e-16   57.6   0.0    1.7  1  tRNA-synt_1d     tRNA synthetases class I (R)
      1e-06   27.8   0.1       0.14   10.9   0.0    3.8  4  tRNA-synt_1g     tRNA synthetases class I (M)
    8.2e-05   21.0   0.0    0.00044   18.6   0.0    2.1  3  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)
  ------ inclusion threshold ------
      0.037   12.9   0.0        2.8    6.8   0.0    2.6  3  tRNA-synt_1f     tRNA synthetases class I (K)
       0.14   12.2   0.0       0.31   11.0   0.0    1.5  1  MIT_C            Phospholipase D-like domain at C-terminus of


Domain annotation for each model (and alignments):
>> DALR_1  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   0.0   5.3e-39   1.4e-35       1     119 []     430     554 .]     430     554 .] 0.94

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 5.3e-39
                 HHHHHHHHHHHHHHTTCTTCCCCHCCHCC...S-SHHHHHHHHHHHTHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHCTSTTSCTHHH....HHH CS
      DALR_1   1 vqyahaRiksilrkaeeegekleeealal...leeeeekeLlkalaqfpevleeaaeelephklaeylyeLaatfhkfYnkervlkeeeeel...aaaR 93 
                 vqy  aR++s+ r+a+e g +    +++    l++++e +Llkala+fp v+++aae +eph++a+yl+eLa ++h+fY+++r+l+  eee    ++aR
  KIR63240.1 430 VQYVAARTASVGRNAAEVGLTRGDGEAFRpelLSHDKENDLLKALAEFPAVVATAAELREPHRVARYLEELAGAYHRFYDNCRILPRGEEEVtdlHRAR 528
                 8****************9987766666658999*****************************************************888888888**** PP

                 HHHHHHHHHHHHHHHHHTT----S-- CS
      DALR_1  94 LaLvkavrqvLangLdlLGieapekm 119
                 L L++a+r v+angL+lLG++ape+m
  KIR63240.1 529 LWLNDATRTVIANGLRLLGVSAPERM 554
                 *************************9 PP

>> Arg_tRNA_synt_N  Arginyl tRNA synthetase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   7.6e-24     2e-20      19      85 .]      27      93 ..       4      93 .. 0.86

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 7.6e-24
                     HHHHGGG-E-.SSGGG-SEEEEGGGG--TT-..-HHHHHHHHHHT---TTTEEEEEEETT.EEEEEE CS
  Arg_tRNA_synt_N 19 leeeeiviekpknpkfGDyatnvamqlakklkknPreiAeeiaeklekseiiekvevagpGFiNffL 85
                     + +   ++e+p+np++GDya+ +a+ql+kk++ +Pre+A+++ae+l   +++++ve+agpGF+N++L
       KIR63240.1 27 ALPGRTAVERPRNPEHGDYASTLALQLSKKVGVPPRELATALAEQLGRAPGVKSVEIAGPGFLNIRL 93
                     4556679**********************************************************98 PP

>> tRNA-synt_1d  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   3.8e-19   9.8e-16      19     297 ..     120     392 ..     106     409 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 3.8e-19
                   T-EEEEE----BTTS--BHHHHHHHHHHHHHHHHHHHCT-EEEEEE--B-SSTCHHHHHHHHHHHTTTTTTS----..-SCCCHHHHHHHHCCCSHC CS
  tRNA-synt_1d  19 kkkvvvdfssPniakemhvGhLrstiiGdavsrlleflGydvirlnhvGDWGtqfGlLiaylekkqdekllqeqel..qdLeafykeakkdydeeei 113
                    +k+ ++f s n   ++h+G +r + +Gda+srll + G dv    +  D G q   ++  l    + + + e     + + ++  e++ +  +  +
    KIR63240.1 120 GQKINLEFVSANPTGPVHIGGVRWAAVGDALSRLLRATGADVGTEYYFNDAGSQIDRFARSLLAAAKGEPAPEDGYggAYIAEIATEVRSRRPDVLE 216
                   58999*************************************************8766655554444443433333113445556666666666677 PP

                   CCHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHCT---EC--CCCCCCCHHHHHHHHHCTT-EEECTTCEEEEECCCTSSCCEECC-TTS CS
  tRNA-synt_1d 114 faerarnyvvkLqsgdedirklwkllvditrtelqklydrldvtlierGeslykeslneivkelkkkglvkesdGalvvfldefgkrlgvvvqksDG 210
                   + + a + v ++++ +  ++++++ l d+  + ++  +++ d+    rGe      l+++++ l+++g   e dGa+ +  ++fg+   +v++ks+G
    KIR63240.1 217 LGDAAAQEVFRVEGVELMFEEIRSSLRDFGVE-FDTYFNEKDLHD--RGE------LDHALARLREQGHLYEADGATWLRTTDFGDDKDRVLRKSNG 304
                   99999***********************9988.888888888776..776......99*************************************** PP

                   -B-HHHHHHHHHHHHHHTT--SEEEEEEECCCHHHHHHHHHHHHCTTSSTTTSEEEEEEE--EE-TTSSB..SBCSSSTC-BHHHHHHH CS
  tRNA-synt_1d 211 gylytttDiaaakerkeelkadkvlyvidsrqslhlqqiflilkkigyvpeskdlehanfGmvlgkdkkk..fktrkGetvkLadlLde 297
                    ++y + D a   ++ +e  +d+v++++ +  + ++ ++ ++    g +p +     ++  + l +d+++  ++ r+G +v L+dl+d 
    KIR63240.1 305 EWTYFAADCAYYLDK-RERGFDRVVIMLGADHHGYIGRMKAMSACFGDDPAVNLEILIGQLVNLVRDGQPvrMSKRAGTVVTLEDLVDA 392
                   ********9877765.5678*******************999999999887543334444556789999744789***********995 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.014        35      11      39 ..     133     161 ..     129     174 .. 0.92
   2 !    8.1   0.0   0.00039         1      64     123 ..     228     287 ..     218     299 .. 0.85
   3 ?   -0.3   0.1      0.13   3.5e+02      22      57 ..     308     345 ..     305     350 .. 0.77
   4 !   10.9   0.0   5.5e-05      0.14     327     364 ..     375     413 ..     368     426 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.014
                   SS---HHHHHHHHHHHHHHHHHHHTT-EE CS
  tRNA-synt_1g  11 ngklHlGhllevisaDifaRykrlrgeev 39 
                   +g++H+G ++ +  +D+++R  r++g +v
    KIR63240.1 133 TGPVHIGGVRWAAVGDALSRLLRATGADV 161
                   699*******999*************997 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00039
                   HHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEE CS
  tRNA-synt_1g  64 eelvekvheeikelfkklnisfdkygrttseehkelvqeifkklkekgliyekeieqlyc 123
                    e ve + eei++ +++++++fd+y + ++ +++    + + +l e+g++ye + + +  
    KIR63240.1 228 VEGVELMFEEIRSSLRDFGVEFDTYFNEKDLHDRGELDHALARLREQGHLYEADGATWLR 287
                   55677788999*****************************************98877765 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.13
                   HHHHHH.HHHHHHHTT-E.EEEEEEE---SHHHHHHHH CS
  tRNA-synt_1g  22 visaDi.faRykrlrgee.vlfvcgtDehGtpielkAe 57 
                   + +aD+ ++  kr rg + v+ + g D+hG    +kA 
    KIR63240.1 308 YFAADCaYYLDKRERGFDrVVIMLGADHHGYIGRMKAM 345
                   566776245567889999899999******98777775 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 5.5e-05
                   -----------HHHHHHHH-HHHHHHHHHH.HS-TTS-E CS
  tRNA-synt_1g 327 KlSkSrgvvvkakealerldadllRYylaa.eapekkDl 364
                   ++Sk  g+vv+ +++++ + +d+ RY la+ +++   D+
    KIR63240.1 375 RMSKRAGTVVTLEDLVDAIGVDASRYALARySSDSPIDI 413
                   7****************************9444444454 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.16   4.1e+02      33      70 ..     131     168 ..     106     188 .. 0.83
   2 ?   -2.5   0.0      0.44   1.1e+03      91     159 ..     213     280 ..     196     282 .. 0.70
   3 !   18.6   0.0   1.7e-07   0.00044     518     594 ..     327     407 ..     302     416 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.16
  tRNA-synt_1  33 yvtGslHiGhalaktlkdivirykrmkGkevlyvpGwD 70 
                  + tG +HiG +   ++ d + r  r +G +v     + 
   KIR63240.1 131 NPTGPVHIGGVRWAAVGDALSRLLRATGADVGTEYYFN 168
                  56999*****99999*******9999999987665555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.44
  tRNA-synt_1  91 erkklgreefrekvr.ewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrg 159
                  ++ +lg ++ +e  r e ++ + eeir++++++Gv +D   + + l++       +++ rl ++g++y++
   KIR63240.1 213 DVLELGDAAAQEVFRvEGVELMFEEIRSSLRDFGVEFDTYFNEKDLHDR--GELDHALARLREQGHLYEA 280
                  5666666666665553456667789999999999999866666666654..3467788999999999975 PP

  == domain 3  score: 18.6 bits;  conditional E-value: 1.7e-07
  tRNA-synt_1 518 dmlleGlDiirgWvarlillslaltgsePfk..evlv...hglvrdeeGrKmSKslgNvidpldvikkygadalRltli.lsd 594
                   +++ G D   g++ r+  +s  + g+ P    e+l+     lvrd++  +mSK+ g v+  +d++++ g+da R++l+ +s+
   KIR63240.1 327 VVIMLGADH-HGYIGRMKAMSACF-GDDPAVnlEILIgqlVNLVRDGQPVRMSKRAGTVVTLEDLVDAIGVDASRYALArYSS 407
                  566666663.46777777776544.44443301344411135899*********************************97443 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.016        42      32      64 ..     131     163 ..     124     175 .. 0.87
   2 ?   -1.9   0.0      0.46   1.2e+03     111     146 ..     234     270 ..     231     276 .. 0.76
   3 ?    6.8   0.0    0.0011       2.8     275     323 ..     369     417 ..     358     444 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.016
  tRNA-synt_1f  32 spSGliHiGnlrevltadlvaralrkrgeevrl 64 
                    p G++HiG +r  + +d++ r lr+ g +v +
    KIR63240.1 131 NPTGPVHIGGVRWAAVGDALSRLLRATGADVGT 163
                   589***********************9998765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.46
  tRNA-synt_1f 111 fnaelvesLdelgievefi.satelYksglydeaike 146
                   + +e+++sL+++g+e++++ ++++l   g +d+a+ +
    KIR63240.1 234 MFEEIRSSLRDFGVEFDTYfNEKDLHDRGELDHALAR 270
                   5578999*********976266778888888887765 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0011
  tRNA-synt_1f 275 llkggekmssSkGnvltledwlevaepevlrflilrrkPkkakkldldl 323
                    + +   ms+  G+v+tled+++ +  +  r+ ++r    + +++d++l
    KIR63240.1 369 RDGQPVRMSKRAGTVVTLEDLVDAIGVDASRYALARYSSDSPIDIDVEL 417
                   4444449*****************************9999999999885 PP

>> MIT_C  Phospholipase D-like domain at C-terminus of MIT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.31      62      94 ..     228     261 ..     203     266 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
       MIT_C  62 edeqkenleelkesleklgielevef.sstihdr 94 
                  + ++ ++ee+++sl+++g+e++  f ++++hdr
  KIR63240.1 228 VEGVELMFEEIRSSLRDFGVEFDTYFnEKDLHDR 261
                 5667899*******************7889***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3887.29
//
Query:       KIR63241.1  [L=461]
Description: diaminopimelate decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-59  200.4   0.0    3.9e-59  200.0   0.0    1.1  1  Orn_Arg_deC_N    Pyridoxal-dependent decarboxylase, pyridoxal
    1.1e-14   54.4   0.0    1.4e-14   54.1   0.0    1.4  1  Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-termina


Domain annotation for each model (and alignments):
>> Orn_Arg_deC_N  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.0   0.0   4.3e-63   3.9e-59       2     247 .]      71     325 ..      70     325 .. 0.98

  Alignments for each domain:
  == domain 1  score: 200.0 bits;  conditional E-value: 4.3e-63
                    HHHHHHHHHHHHHCTCCEEEEEGGG---HHHHHHHHHTTEEEEESSHHHHHHHHHCTTTGGGEEEEESS--HHHHHHHHHCTHTEEEESSHHHHHH CS
  Orn_Arg_deC_N   2 asierklkrwkkalprikvfYavKansdlavlellaelGlgldcaSkaElelvlaagvsperiifanpckqreelryalekgvkvvtvdnveelek 97 
                    +++++++++++ a+p++ v+Ya Ka+  +av++++ae+Gl ld+   +El+++l+ag+++eri f++++k+++el +al+ gv  +++d++ e+++
     KIR63241.1  71 DDLRSRCRDFRAAFPDADVYYAGKAFLCRAVVRMIAEEGLFLDVCTGGELATALSAGMPAERIGFHGNNKSVAELTRALDAGVGRIVLDSFTEIDR 166
                    57899******************************************************************************************* PP

                    HHHHHCC....EEEEEEEE-SCCSSSSTCCCSSSTTSSSSEEHC..HHHHHHHHHHHHTTEEEEEEE---BSSC-SCHHHHHHHHHHHHHHHHHH. CS
  Orn_Arg_deC_N  98 laklape....akvllRiktdvsaatcelistggessKFGaale..eavealleaakeenlqlvGvsfHvGSgvsdleafvkavekalklfdela. 186
                    l  la e    + vl+R++++v+a+t+e+i+t++e++KFG++l+   a++a+ +++ e  l+l G++ H+GS+++d+++f   ++++l l  +++ 
     KIR63241.1 167 LTALARErgvrPGVLIRVTVGVEAHTHEFIATAHEDQKFGFSLAggAAAAAAFKVIDEGVLDLRGLHSHIGSQIFDASGFEVSARRVLALQAQIRd 262
                    ******9999999*******************************9999999********************************************9 PP

                    HHT---SEEE--S-BS-HCSTTSSSSTHHHHHHHHHHHHHHHHH..TSSS-EEEE--SHHHHG CS
  Orn_Arg_deC_N 187 elGvklkiLdvGGGfgveyeeeeeplkleeiaekirealeeafp..gdkevtiiaEpGRalva 247
                      Gv+l  Ld+GGGfg++y+ +++p   +e a+ +r+ ++  ++      +++ +EpGRa+v+
     KIR63241.1 263 ARGVELPELDLGGGFGIAYTTQDDPATPQELAKRLRKIVDGECAaeRLAVPRLSIEPGRAIVG 325
                    9**************************************998887788899*********995 PP

>> Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-terminal sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   1.6e-18   1.4e-14       5      98 .]     262     417 ..      65     417 .. 0.68

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 1.6e-18
                      E...............................................................GGEEEEEEEEEEEEET.CEEEEEES--TTT CS
                      x...............................................................xxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Orn_DAP_Arg_deC   5 d...............................................................eagvLvtrViavkese.kkkfvivdaGmnd 34 
                      d                                                                a+  + +V +vk+++  +++v vd+Gm+d
       KIR63241.1 262 DargvelpeldlgggfgiayttqddpatpqelakrlrkivdgecaaerlavprlsiepgraivgPAVFTLYEVGTVKNVDgIRTYVSVDGGMSD 355
                      05555555555555555555555555555555555555555555555555666666666666666788899*******99669*********** PP

                      S-HHHHCTT-S-E.ESBTT-SCEEC.EEEEEEEE-SSSSTT-EEEEEEEEEE.--TT-EEEESS-S CS
                      xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Orn_DAP_Arg_deC  35 llrpalygsfhei.pvkeeeaekeeeeeeevdvvGptCesgDvlakdrelpe.levGdllafedaG 98 
                      ++r aly++ + +  ++    +++++e   ++vvG+ CesgD+++kd  lp+ +++Gdl+a+  +G
       KIR63241.1 356 NIRTALYDASYSAtLAS----RASTAEPLLARVVGKHCESGDIVVKDEFLPAdVQAGDLVAVPGTG 417
                      *********99993332....334455678*******************************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3286.63
//
Query:       KIR63242.1  [L=435]
Description: homoserine dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-66  224.1   0.2    1.5e-66  223.6   0.2    1.3  1  Homoserine_dh  Homoserine dehydrogenase
    2.9e-21   76.3   0.4    8.9e-21   74.7   0.1    2.0  2  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
    2.1e-14   53.0   0.2    5.7e-14   51.6   0.2    1.8  1  ACT            ACT domain
    0.00098   19.1   0.0     0.0028   17.6   0.0    1.8  1  ACT_6          ACT domain
  ------ inclusion threshold ------
      0.014   15.9   0.0      0.033   14.8   0.0    1.6  1  ACT_4          ACT domain
       0.05   13.8   0.4       0.21   11.8   0.0    2.2  2  DUF1611_N      Domain of unknown function (DUF1611_N) Rossman


Domain annotation for each model (and alignments):
>> Homoserine_dh  Homoserine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.6   0.2   5.1e-70   1.5e-66       1     173 []     135     318 ..     135     318 .. 0.99

  Alignments for each domain:
  == domain 1  score: 223.6 bits;  conditional E-value: 5.1e-70
                    --HHHHHHTCTTSEEEEEEEE--HHHHHHHHHHHCHTT-HHHHHHHHHHTTSS-SSTHHHHTTHHHHHHHHHHHHHHCTTT--GGGSEE--STTS- CS
  Homoserine_dh   1 PiiktlkeilsgdritrieGilngtlnyiltemeeegasfsevlkeaqelGyaeaDptdDveGlDaarKlailarlafgleveledvevegisklt 96 
                    P++++l+++l+gdr++r++Gi+ngt+n+il++m+++ga f+e+l+ea+elGyaeaDpt+DveG+Daa+K+aila+laf+++v+ +dv++egi+++t
     KIR63242.1 135 PLLRPLRDSLHGDRVNRVTGIVNGTTNFILSAMDATGAGFAEALEEATELGYAEADPTADVEGFDAAAKAAILASLAFHTRVTAADVHREGITEVT 230
                    899********************************************************************************************* PP

                    HHHHHHHHCTTEEEEEEEEE...........CEEEEEEEEEETTSGGGHSSST-EEEEEEESSSEEEEEEES-SSHHHHHHHHHHHHH CS
  Homoserine_dh  97 aedikeakeegkvlklvasa...........vearVkpelvpkshplasvkgsenavlvetdrlgelviqGpgaGaepTAsavlsDll 173
                    a+d++ ak++g+++kl+++a           v++rV+p+++p +hplasv +++nav+ve++++g+l+++G+gaG++pTAsavl+D++
     KIR63242.1 231 AADVASAKAMGCTIKLLCIAargrdaagretVSVRVHPAMIPLTHPLASVGDAFNAVFVEAEAAGQLMFYGRGAGGAPTASAVLGDVV 318
                    *************************9999998******************************************************96 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.1     3e-24   8.9e-21       1     117 []       7     127 ..       7     127 .. 0.94
   2 ?   -3.0   0.0       3.6   1.1e+04      47      67 ..     273     293 ..     231     297 .. 0.49

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 3e-24
                    --SHHHHHHHHHHHH---S......SEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-.S--HHHHTTHHHHHHTTEEEE-S CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqse......ielelvavadrdsllskdrkallasealtldlddliahldpdvvVEc.asseavaelvlkaLkagkdvvta 89 
                    G+G++Gs+v+++l +q ++      ++le++++a+r+ l +++    + ++  t+d   li++ d+dvv+E+ ++ e +++ +++aL+agk+vvta
     KIR63242.1   7 GCGTVGSEVVRLLHEQSADlaarigAPLEIAGIAVRR-LGRDRGDLPVDEALFTTDPLGLIKRDDVDVVIEVvGGIEPARGWLVEALRAGKSVVTA 101
                    9*****************9******************.666666666777788999999999889******************************* PP

                    --CGGG-HHHHHHHTSSSTTS--.EE-G CS
  NAD_binding_3  90 nkgaladealyeeLreaaeangakiyve 117
                    nk++la  + + +L++aa + ga++y+e
     KIR63242.1 102 NKALLA--EDGPALHDAAAEGGADLYYE 127
                    ******..******************97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.6
                    B---HHHHHHHHS.-EEEEE-.S CS
  NAD_binding_3  47 ltldlddliahld.pdvvVEc.a 67 
                    lt +l ++ +  + + v+VE+ a
     KIR63242.1 273 LTHPLASVGD--AfNAVFVEAeA 293
                    3333333333..34677777654 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.2   1.9e-17   5.7e-14       3      65 ..     353     419 ..     351     420 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 1.9e-17
                 EEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTT....ECEEEEEEEEEEHHHHHHHHHHHHTT CS
         ACT   3 lrvgvpDrPGlLarvfgaladrgiNidsieqrssedk....vagivfvvivvdeedleevlealkkl 65 
                 ++++v+DrPG+La+v+g++a+++++i+ + q+s +       a++v+v++v+ ++ l++++e+l+ l
  KIR63242.1 353 ISLDVADRPGVLAAVAGVFARHDVSIATVRQGSADGPagsgDAELVIVTHVAPDAALAATVEELRGL 419
                 889*************************************************************965 PP

>> ACT_6  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   9.2e-07    0.0028      10      37 ..     358     385 ..     353     389 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 9.2e-07
       ACT_6  10 pdrpGltasLtsvlaefgvnilDieqav 37 
                 +drpG++a++++v a+++v+i++++q  
  KIR63242.1 358 ADRPGVLAAVAGVFARHDVSIATVRQGS 385
                 7*************************65 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.1e-05     0.033       8      78 ..     352     425 ..     349     426 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
       ACT_4   8 rleveaedrkglLaditqviseekanivsvnaktrkk...dglaeikitveVkdvehLsrviakLraipgVisV 78 
                 ++++ + dr+g+La ++ v++ ++++i  v+  + +    +g ae+ i   V   + L+  ++ Lr ++ V sV
  KIR63242.1 352 HISLDVADRPGVLAAVAGVFARHDVSIATVRQGSADGpagSGDAELVIVTHVAPDAALAATVEELRGLDIVRSV 425
                 689999************************99986446666677777777777777888888888877777776 PP

>> DUF1611_N  Domain of unknown function (DUF1611_N) Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.1e-05      0.21      49      88 ..      84     124 ..      73     125 .. 0.82
   2 ?   -3.1   0.0       3.1   9.3e+03      17      42 ..     226     253 ..     216     257 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.1e-05
   DUF1611_N  49 wreavkeAleaGldvvsGlHe.rLsddpelaalakkkgvki 88 
                  r  ++eAl+aG +vv+  +    +d p+l ++a++ g+++
  KIR63242.1  84 ARGWLVEALRAGKSVVTANKAlLAEDGPALHDAAAEGGADL 124
                 566799***************5555669*******999876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.1
   DUF1611_N  17 ipvvssleea..laagaevlviGiapeg 42 
                 i++v+  + a   a g+   ++ ia++g
  KIR63242.1 226 ITEVTAADVAsaKAMGCTIKLLCIAARG 253
                 4444444433334556666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2906.01
//
Query:       KIR63243.1  [L=349]
Description: L-threonine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-72  242.6   9.2    6.5e-72  242.4   9.2    1.0  1  PALP           Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
       0.27   11.4   2.6        4.7    7.5   0.4    3.1  3  ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.4   9.2   7.2e-76   6.5e-72       1     294 []      22     316 ..      22     316 .. 0.96

  Alignments for each domain:
  == domain 1  score: 242.4 bits;  conditional E-value: 7.2e-76
                 GGGCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-H.HHHHHHH CS
        PALP   1 ltlgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadasp.ekvallr 98 
                 +tl++g+TPl+++p ls++lg++++lK E+ nptgSfKdRg++ +++++ e+ g k +++as+GN+ +++Aa+aa++G+ + ++vp+++ + +k+a+  
  KIR63243.1  22 VTLHEGNTPLLPAPVLSARLGCDVYLKVEGANPTGSFKDRGMTLAVSKAVEH-GDKAIICASTGNTSASAAAYAARAGITCAVLVPQGKIAlGKLAQAL 119
                 5899************************************************.*************************************88******* PP

                 HTT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHH....HSTT....-EEEE CS
        PALP  99 llGaevvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlggkpdavvvpvGgGgliaGiaaglke....rrpd....vrvig 189
                  +Ga++ +v g++d+++a+aa+la++ + + lv++  np++ +g++t+++Ei+e lg++pd   +pvG++g+i++ + g+ e    +  +    ++++g
  KIR63243.1 120 VHGARLLQVTGNFDDCLALAAKLAQD-YPVALVNSV-NPDRLHGQKTAAFEIVEALGDAPDIHCLPVGNAGNISAYWMGYSEdlrdG--NatkaPKMYG 214
                 **************************.*********.9********************************************88541..35578***** PP

                 EEECTTCGGTTCCS..S.SS..B.SSS.CCSTCS..CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHCCTTC CS
        PALP 190 vepegsdalarslragrrvtvpvsdtiadglavg..spselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal.klreagelkeg 285
                  +++g++++ ++        v++++tia+++++g  ++ ++a+++ d++++ i +vsd e+l+a rllar+ g +ve  saa++a+l +++ ag++++g
  KIR63243.1 215 FQAAGAAPIVTGQ------VVHEPSTIATAIRIGnpASWTKAVDARDASGGLIAAVSDREILAAYRLLAREVGAFVELGSAASVAGLlQQAAAGKVPAG 307
                 *************......88888**********66666777777899999************************************************ PP

                 EEEEEEE-B CS
        PALP 286 drvvviltg 294
                 ++vv+ +tg
  KIR63243.1 308 STVVCTVTG 316
                 *******98 PP

>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.024   2.1e+02      40      56 ..      78      94 ..      61     127 .. 0.71
   2 ?   -1.8   0.0      0.41   3.7e+03      26      50 ..     168     192 ..     143     193 .. 0.72
   3 ?    7.5   0.4   0.00052       4.7      49      81 ..     288     319 ..     283     321 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.024
                   -THHHH-B-GGGHHHHH CS
  ACP_syn_III_C 40 vnldeyGntsaasipla 56
                   ++ + +Gntsa+   +a
     KIR63243.1 78 IICASTGNTSASAAAYA 94
                   45567788888766655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.41
                    HHHHHHT--GGGB--THHHH-B-GG CS
  ACP_syn_III_C  26 avakklglpeekvvvnldeyGntsa 50 
                    ++++ lg +++ +   + + Gn+sa
     KIR63243.1 168 EIVEALGDAPDIHCLPVGNAGNISA 192
                    4667777777777777777777776 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.00052
                    GGGHHHHHHHHHHHTTSS-TT-EEEEEEEETTT CS
  ACP_syn_III_C  49 saasiplaLdeaveegklkpgdlvllvgfGaGl 81 
                    saas+  +L++a + gk+ +g +v+ + +G Gl
     KIR63243.1 288 SAASVAGLLQQAAA-GKVPAGSTVVCTVTGHGL 319
                    78999999999988.*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2627.19
//
Query:       KIR63244.1  [L=1081]
Description: hydrogenase expression protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-220  733.6  24.4   3.7e-220  733.4  24.4    1.0  1  ACR_tran   AcrB/AcrD/AcrF family
    4.1e-16   58.8  46.2    1.8e-09   37.0  14.4    3.3  4  MMPL       MMPL family
    1.5e-07   31.0  32.0    0.00037   19.9   9.4    2.3  2  SecD_SecF  Protein export membrane protein


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  733.4  24.4  6.1e-224  3.7e-220       2    1020 ..       5    1005 ..       4    1006 .. 0.94

  Alignments for each domain:
  == domain 1  score: 733.4 bits;  conditional E-value: 6.1e-224
                  HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEETTSEEEEEEEESTTS- CS
    ACR_tran    2 ikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqSseglssitltFedgtd 98  
                  ++f+++ + +++++a++ +l+G +++ sl  + lP++++p   v + ypGa+pe+ves+vt+p+E++++g++gl++v+S+S+eg+++++++F  gtd
  KIR63244.1    5 ARFSLANRGLVALIAVVTTLFGLFAVPSLKQQLLPSLEFPGAFVVAVYPGAAPEIVESQVTEPIENSIQGIPGLEKVTSTSREGSATVQVEFTFGTD 101 
                  6899********************************************************************************************* PP

                  HHHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHHHC CS
    ACR_tran   99 idiArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqklak 195 
                  +d+  ++ + +l+++ ++LPe+v ++ ++ +  ++ +++++a     g  ++  l+d +  n+ ++L+ ++GV  v + G++e+ v +++dp+kla+
  KIR63244.1  102 LDNVVNKMETALNRIDSQLPEGVDPQVLTGTTDDLPAVVIAAS----GGGDERALADRLRDNVVPELEGIDGVRTVAVTGTREQVVTVTPDPAKLAA 194 
                  ***********************77777766666655554443....3469999******************************************* PP

                  TT--HHHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEE..ETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEEEEEETTS CS
    ACR_tran  196 lgltltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivk..nqdgskvrlrDvAkVelgaeeerlaatfngkpavllevkklpga 290 
                   +l +t + +alk + v v+aG++++ +++l++++ + + s++d++ i++     ++++v+l+DvA Ve++ +  + + ++ng +  +++v  +p+ 
  KIR63244.1  195 AKLAPTAIGTALKTNGVAVPAGAVSDGSRALTVQVGTPIRSVDDLKGIVLTstAPKAAPVKLGDVAAVEQQLAPATSFTRTNGRDSLGIAVTAAPDG 291 
                  **************************************************988889***************************************** PP

                  BHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHH CS
    ACR_tran  291 naievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNllt 387 
                  na+e++++++++l+ L+    +g++++vv+d+++fv++sie   ++ l+++v++v+v+++FL ++r+t+++a+++Pls+l+++++l + ++slNllt
  KIR63244.1  292 NAVEISHEIRDRLADLRS--ASGADLTVVFDQAPFVEKSIESLTTEGLLGLVMAVVVILVFLLSVRSTVVTAVSIPLSVLVALIALWIGDYSLNLLT 386 
                  ******************..9**************************************************************************** PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
    ACR_tran  388 LfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlvaltltPa 484 
                  L++L++A+G vvDd+iVv+Eni+r+le  ge++++a+l +++e++ga+ a++l+ +avf Pi+++gG++G+lf++fa+t+ +a+l+s+lv+lt++P+
  KIR63244.1  387 LGALTIAVGRVVDDSIVVLENIKRHLEY-GEPKRQAILTAVREVAGAVTASTLTTVAVFAPIALVGGFVGQLFAPFAITVTVALLASLLVSLTVIPV 482 
                  ****************************.******************************************************************** PP

                  HHHHHS---STT-CT.SHHHHHHHHHHHHHHHHHHHHHHHHHSH...HHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB-HHHHH CS
    ACR_tran  485 lcallLkerkeekek.kffrefnrlfealeraYakllekvlrhr...avvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgvsleqtq 577 
                  l+ ++Lk+ +  +e  ++ +e ++l + l+r+Y +++ +  r+r   ++++ + lv+l+++++l   + ++fl +  +  l+++ qlp+g+ l++t 
  KIR63244.1  483 LAYWFLKPGRVADEAaRRAAEEKELRSPLQRGYLPVIGFATRSRgtrWITVGLGLVVLLGTFVLSGALKTNFLDDSGQDTLTITQQLPAGSGLAATD 579 
                  ********99988877888999999999***********999762214555566777888************************************* PP

                  HHHHHHHHHHHTTTTEEEEEEEEC.ECS.SE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCC.CSSSSCEEE CS
    ACR_tran  578 kvlkqvekilkekpevesvfavtG.fae.sgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlre.letlsgvrs 671 
                  ++ +qve++l   + ve  +  +G +++  +   g n a   ++L  e+       +v+++ ++lr+e++++         + +l++   +++g+  
  KIR63244.1  580 QAARQVESVLDRAEGVETYQVSAGgSDQpWAGGGGNNAATFSVTLDGET-------DVAEVKRALRREFDSLGAS------VGELSFgGAEAGGSTN 663 
                  *****************99865550555645578888999999998887.......6799999999999998544......4555553467799999 PP

                  EEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEE-GGG CS
    ACR_tran  672 elqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvvrleedl 768 
                  +l+v++++ d e+L +aaeq +aa++   +++dv+++  e++p ++v++dr +aar G++ +++++++++   g+  +++  +g + +vv+r   + 
  KIR63244.1  664 QLEVVVQAADTEVLARAAEQARAAMAGTADVEDVSTSLAERVPRVDVTVDRLAAARAGLTEAAVGQLVAQVYRGTPLGQVTFDGGQQDVVLRSGGQP 760 
                  ************************************************************************************************* PP

                  SSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHHHHHHCHHH CS
    ACR_tran  769 rsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiewtgqaeqeqeasnsll 865 
                     +e+l++l+v       v+l+++a i++++gp++++r++g rsv+++g++   ++  + ee ++k+   + +p g+ti+ +g ++ +  a   l 
  KIR63244.1  761 PLTVEELRALRV-----GPVKLDDIADITQAEGPQQVTRIDGERSVTVTGTATGANLGATTEELQQKLD-DIDVP-GATISIGGVSADQADAFADLG 850 
                  **********99.....58*******************************9887777666666666665.55776.99******************* PP

                  HHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHC CS
    ACR_tran  866 ilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeaileaakeR 962 
                  + v +a+ +vfl++ a++ sl ++l+ l++vP+a +Ga+  ll++g++l v a++G+++l+G++v Nai+l++++++ r+ +g+ + ea++e++++R
  KIR63244.1  851 LAVLAAIAIVFLIMVATFRSLTQALILLISVPFAATGAIGLLLVTGTPLGVPALIGVLMLVGIVVTNAIVLLDLINQYRA-QGMGVGEAVVEGGRRR 946 
                  ********************************************************************************.9999************ PP

                  HHHHHHHHHHHHHHHHHHHCT.-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  963 LrPiLMTalaailGvlPLals.tgaGselqqplgivvlgGlvtstvLtLllvPvlYvlv 1020
                  LrPiLMTa+a+i+ +lP+a++ tg+G  + +pl+ivv+gGl++st+LtL lvP lY +v
  KIR63244.1  947 LRPILMTAVATIFALLPMAFGlTGEGGFISKPLAIVVIGGLLSSTLLTLILVPTLYTMV 1005
                  ********************979*********************************987 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   1.3      0.77   4.6e+03      76     138 ..     213     267 ..     171     276 .. 0.64
   2 !   37.0  14.4   2.9e-13   1.8e-09     160     312 ..     337     500 ..     291     534 .. 0.78
   3 ?   -3.2   0.3      0.49   2.9e+03      98     129 ..     573     604 ..     560     606 .. 0.75
   4 !   37.0  23.8     3e-13   1.8e-09      83     315 ..     795    1019 ..     655    1027 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.77
        MMPL  76 vaaafvSkDgkaaralvtlegdpgsteadesvaairaaveearpleglkvevtGpaatladlr 138
                 v a++vS+  +a++++v +         ++sv++++ +v   ++++ + v+++ +aa+ + l+
  KIR63244.1 213 VPAGAVSDGSRALTVQVGTP--------IRSVDDLKGIVLTSTAPKAAPVKLGDVAAVEQQLA 267
                 66666666666666666555........67888888888888888888888888888776665 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 2.9e-13
        MMPL 160 LlivyrSlvaallplltvvvsllaalgl.vlilalllglelstfvlgl..lvvlliavG..tDYallLvsRyreelaagedreeaviravastgkvvta 253
                 Ll +  ++v  l+ ll+v   +++a+++ +++l  l +l + + +l+l  l +l+iavG  +D  + ++  ++  l+ ge +++a+ +av+ ++++vta
  KIR63244.1 337 LLGLVMAVVVILVFLLSVRSTVVTAVSIpLSVLVALIALWIGDYSLNLltLGALTIAVGrvVDDSIVVLENIKRHLEYGEPKRQAILTAVREVAGAVTA 435
                 45555667777777777777777777777777777777777777777733557999999778************************************* PP

        MMPL 254 aGltvaiamlgLvvar...lpvlaqvGvaialGvlvdvlivlTllPAllvl...lGraalakprr 312
                 ++lt ++ ++  +++     + +a +++++ +++l ++l++lT++P l+      Gr a  ++rr
  KIR63244.1 436 STLTTVAVFAPIALVGgfvGQLFAPFAITVTVALLASLLVSLTVIPVLAYWflkPGRVADEAARR 500
                 ****999999887775222478999*********************9997733334443334444 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.49
        MMPL  98 pgsteadesvaairaaveearpleglkvevtG 129
                 +g  ++d++++++++++++a+  e  +v+ +G
  KIR63244.1 573 SGLAATDQAARQVESVLDRAEGVETYQVSAGG 604
                 45567788888888888888888899999888 PP

  == domain 4  score: 37.0 bits;  conditional E-value: 3e-13
        MMPL   83 kDgkaaralvtlegdpgsteadesvaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvv 179 
                   Dg+     vt++g +      ++ +++++ +++ +   g++++++G++a  ad    +  dl+l+++++++++++i++ ++rSl  al++l++v +
  KIR63244.1  795 IDGER---SVTVTGTATGANLGATTEELQQKLDDID-VPGATISIGGVSADQAD----AFADLGLAVLAAIAIVFLIMVATFRSLTQALILLISVPF 883 
                  55554...5667777777777788999999999999.9*********9998888....667************************************ PP

        MMPL  180 sllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvarlp...vl 273 
                      a+gl+l++   lg+        + v++l+++ +  a+ L+  + +++a+g    eav +  ++  + +++ ++  ++a+l +++   +   ++
  KIR63244.1  884 AATGAIGLLLVTGTPLGVP--A---LIGVLMLVGIVVTNAIVLLDLINQYRAQGMGVGEAVVEGGRRRLRPILMTAVATIFALLPMAFGLTGeggFI 975 
                  *******966555555443..2...3467788899999999********************************************999654322377 PP

        MMPL  274 aq.vGvaialGvlvdvlivlTllPAllvllGraa.lakprrkrk 315 
                  ++ +++++  G+l ++l++l l+P l +++   +   ++rr+r+
  KIR63244.1  976 SKpLAIVVIGGLLSSTLLTLILVPTLYTMVENTKeSLRARRQRR 1019
                  767**************************999877777777765 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6  14.6   6.6e-07    0.0039      29     183 ..     332     484 ..     317     489 .. 0.68
   2 !   19.9   9.4   6.3e-08   0.00037      27     182 ..     844     997 ..     818    1007 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.6e-07
                 HHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH..HHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHH CS
   SecD_SecF  29 laekavlallialvliliyvalrFewrvalaaiialvhD..viitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiin 125
                 l+++++l l++a+v+il+     F  +v + +++a+     v++++ +l +    ++l t++al   +G  v+d++vv + ++ +l+    ++ +++i 
  KIR63244.1 332 LTTEGLLGLVMAVVVILV-----FLLSVRSTVVTAVSIPlsVLVALIALWIGDYSLNLLTLGALTIAVGRVVDDSIVVLENIKRHLEY--GEPKRQAIL 423
                 555555565555555555.....55555555555555440045555555555699******************************876..667777777 PP

                 HHHHHHHHHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHHHHH CS
   SecD_SecF 126 lslnqtLtrtiltslttllvvvallllgg...dslkdfalallvGlivgtyssifiaspll 183
                 +++ +      + +ltt+ v + + l+gg   +  + fa++++v+l++  + s+ +   l+
  KIR63244.1 424 TAVREVAGAVTASTLTTVAVFAPIALVGGfvgQLFAPFAITVTVALLASLLVSLTVIPVLA 484
                 8877766644444555555555566665545488888999999999988888876655555 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 6.3e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHT-H.HHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHH CS
   SecD_SecF  27 kelaekavlallialvliliyvalrFew.rvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeii 124
                 + +a    la+l+a++++++ ++  F+    al  +i++ + ++ ++g+l ++g ++ + +++++L+++G  v + +v+ d + +   + + + + e++
  KIR63244.1 844 DAFAD-LGLAVLAAIAIVFLIMVATFRSlTQALILLISVPFAATGAIGLLLVTGTPLGVPALIGVLMLVGIVVTNAIVLLDLINQY--RAQGMGVGEAV 939
                 44443.44688888888888888888862568888999*********************************************998..45688889999 PP

                 HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHH CS
   SecD_SecF 125 nlslnqtLtrtiltslttllvvvallllggdslkdfalallvGlivgtyssifiaspl 182
                  ++    L   ++t + t+++++ + +   +    ++  l + +i g +ss ++   l
  KIR63244.1 940 VEGGRRRLRPILMTAVATIFALLPMAFGLTGEGGFISKPLAIVVIGGLLSSTLLTLIL 997
                 8888999988888999888888888776555555555555555555555555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1081 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1288  (0.0718389); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.45
# Mc/sec: 7235.13
//
Query:       KIR63245.1  [L=273]
Description: polysaccharide deacetylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-30  103.9   0.0    7.3e-30  103.4   0.0    1.2  1  Polysacc_deac_1  Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   4.1e-34   7.3e-30       3     123 ..      72     192 ..      70     193 .. 0.95

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 4.1e-34
                      HTTSTEEEEEEEESS.CSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTT.EEEEE--SS--EGGGSHHHHHHHHHHHHHHHHHHHH CS
  Polysacc_deac_1   3 tkgkksvalTfDdgp.rdntteilpvLkkykvkatffvigglvedypdevremaasG.veignHtinhsnlkrlseeevrreierakdalrkal 94 
                       +g++ valTfDdgp +++t+ +l++L++y v+atff++g++v ++ d++r     G +e+gnH++ h++l r  ++ev +++ ra da+ + +
       KIR63245.1  72 RTGQRLVALTFDDGPrPQWTPMVLDTLERYAVPATFFLVGQHVRQHADLLRGRL--GrHEVGNHSWAHHDLARHDAAEVHDDLSRAHDAIAEGV 163
                      6799***********889999*****************************9877..55************************************ PP

                      S----EEE-GGGEE-HHHHHHHHHTT.EE CS
  Polysacc_deac_1  95 greprlfryPygsasatvlevarelgfay 123
                      g  prl+r+Pyg     vl +a++l+++ 
       KIR63245.1 164 GVAPRLLRPPYGHLGGAVLHAAARLDYRL 192
                      *************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2184.34
//
Query:       KIR63246.1  [L=413]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-25   87.2  45.0    9.6e-25   87.2  45.0    1.7  2  MFS_1     Major Facilitator Superfamily
      4e-16   58.5  39.5    5.1e-16   58.2  39.5    1.0  1  MFS_3     Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2  45.0   1.1e-28   9.6e-25      14     351 ..      31     360 ..      17     362 .. 0.80
   2 !    2.1   0.4    0.0082        74      40      80 ..     353     392 ..     350     402 .. 0.71

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 1.1e-28
       MFS_1  14 ilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa....sslwlllvlrvlqGlgagalfpagaa 108
                 +  p+l   l   l+ s+    l+l+l + + a++ + +G ++drf r+++++++ ++ +lg+llll +     + wl +v+ ++ +++ +++ pa++a
  KIR63246.1  31 VMVPLL--VLLPKLTGSGVWGALVLALDTGVVALLLPYTGTIADRFDRKKIMMAANVAALLGVLLLL-GvrgaGTAWLAMVAIAVVAVAKAFYSPAAQA 126
                 333333..4445555566666778888888899999999***********************44444.224547788********************** PP

       MFS_1 109 liadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdp 207
                 ++  +  +e+ + ++++++++++  +++g+ lgg+l++++g  a+f+++a+ + la+ l++l  +  + +r    p+++     +a++++a++++ ++p
  KIR63246.1 127 ALPNVLDPEDLAAGNAIAGSAWGTMTVVGASLGGVLSAAAGPYACFWVAAGGLTLAAGLAGLIRRPLQAPRDAAVPAQR----TWAAIREALGYIGHRP 221
                 **************************************************99999988888888777777777778888....9*************** PP

       MFS_1 208 vlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll. 305
                  ++ l+++   ++   +g+lt +pl l  v+g + ++ agll+a+ +++    al++  l++r+   r++ll +l+l++++ gla+l+++  +++ l+ 
  KIR63246.1 222 RVLGLVTVKSAVG-LGNGVLTVFPL-LAGVYGVG-AIGAGLLFAVRGAG----ALVGPILMRRVLTNRAWLLPGLALSMSLYGLAYLGTSVVNWFPLVl 313
                 8875555555554.8899*******.5*******.45555444444444....6677778899888889999999999999999999999333333334 PP

       MFS_1 306 .vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggal 351
                  +++++ f++g  +++++++++  +p + +g++++  +++ +l++++
  KIR63246.1 314 aLVFVAHFAGGSNWVMSNYALQGEVPDRLRGRVFATDMMLATLAISV 360
                 244447779999*************************9999999887 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.0082
       MFS_1  40 lyalgaavaslplGrlsdrfGrrrvlllglllfalglllll 80 
                 l +l+ +v++l+++ ++d +  r vl  + l++++  +l++
  KIR63246.1 353 LATLAISVSQLVVAGVVDLVDERVVLAGCGLVTLVY-ALGW 392
                 556788889999988889997777666666666665.4444 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2  39.5   5.7e-20   5.1e-16       8     396 ..      10     397 ..       4     409 .. 0.81

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 5.7e-20
       MFS_3   8 rqkvFrviWiaslvsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwll 106
                 r++ Fr +++a+lv     +  +v    l+ +++ s +  Alv a  t  + ll   +G +aD fdr+k+++a+ +  +l+ +   +l + g  + wl 
  KIR63246.1  10 RNRSFRNLFLAELVVFGADWFVMVPLLVLLPKLTGSGVWGALVLALDTGVVALLLPYTGTIADRFDRKKIMMAANVAALLGVL--LLLGVRGAGTAWLA 106
                 8999**********99999*****************************99999999*****************9988777654..45677788899*** PP

       MFS_3 107 laltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavna..lsylalivallrwkrevrks.slprEk 202
                 ++ + ++++  a+ +Pa qA+++++++ +d+ a  a+    + +   vG  lgGvl aa+G+ + f v+a  l+  a ++ l+r   +++++  +p+ +
  KIR63246.1 107 MVAIAVVAVAKAFYSPAAQAALPNVLDPEDLAAGNAIAGSAWGTMTVVGASLGGVLSAAAGPYACFWVAAggLTLAAGLAGLIRRPLQAPRDaAVPAQR 205
                 ******************************************************************88764488889999999999888765279**** PP

       MFS_3 203 llealraglRftaas.reikavlvRaalFglsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrL.RerlsserlvllaavalAlvll 299
                   +a+r++l +     r +  v v++a+ gl    vl++ Pl+a    + +a+  G+l++  G+GA++g +l+ r+  +r      ++l++  + l  l
  KIR63246.1 206 TWAAIREALGYIGHRpRVLGLVTVKSAV-GLG-NGVLTVFPLLA-GVYGVGAIGAGLLFAVRGAGALVGPILMRRVlTNRAWLLPGLALSMSLYGLAYL 301
                 ***********97651667777777765.776.579*******9.578999******************998754312222222223455555666666 PP

       MFS_3 300 slalas....slwvavlvlllgGaaWitalstlnvavqlavPrWvvgRalavYltvlaGglaaGsllWGavaealsvtlaLlaaaaalllaaaillllk 394
                  +++++     l++++++   gG+ W+++    n a q  vP+ ++gR++a  +++ + +++   l+   v++ +  ++ L  ++ ++ l+ a++ +++
  KIR63246.1 302 GTSVVNwfplVLALVFVAHFAGGSNWVMS----NYALQGEVPDRLRGRVFATDMMLATLAISVSQLVVAGVVDLVDERVVLA-GCGLVTLVYALGWRVA 395
                 66666521112334444555688889875....8899999************999999999999988888887766555554.3444455566666665 PP

       MFS_3 395 lp 396
                  +
  KIR63246.1 396 TR 397
                 55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 2622.24
//
Query:       KIR63247.1  [L=138]
Description: hypothetical protein TK50_20560 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.3    9.0   5.6       0.58   10.1   2.1    2.2  2  PSI_8     Photosystem I reaction centre subunit VIII


Domain annotation for each model (and alignments):
>> PSI_8  Photosystem I reaction centre subunit VIII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.1   3.2e-05      0.58       1      16 [.      15      30 ..      15      31 .. 0.90
   2 ?   -1.0   0.1      0.09   1.6e+03       9      22 ..      87      91 ..      85      92 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3.2e-05
                HHHHHHHHHHTHHHHH CS
       PSI_8  1 LPsIlVPlVGlvfPAV 16
                LP +lV ++Glv+ AV
  KIR63247.1 15 LPTVLVLVTGLVLAAV 30
                9***********9776 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.09
                HHTHHHHHHHHHHH CS
       PSI_8  9 VGlvfPAVaMalLF 22
                V         +lLF
  KIR63247.1 87 V---------GLLF 91
                4.........5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 940.54
//
Query:       KIR63248.1  [L=703]
Description: transcription termination factor Rho [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-29  100.9   0.1    5.1e-29   99.9   0.1    1.5  1  Rho_RNA_bind  Rho termination factor, RNA-binding domain
    8.1e-22   77.9   0.0    1.3e-21   77.3   0.0    1.3  1  ATP-synt_ab   ATP synthase alpha/beta family, nucleotide-bind
    7.5e-11   41.8   0.0    3.4e-10   39.7   0.0    2.2  2  Rho_N         Rho termination factor, N-terminal domain
  ------ inclusion threshold ------
      0.022   14.7   0.0      0.042   13.8   0.0    1.3  1  NACHT         NACHT domain
        5.6    6.9  10.1        8.1    6.3  10.1    1.1  1  TFIIA         Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> Rho_RNA_bind  Rho termination factor, RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.1   1.4e-32   5.1e-29       1      73 []     333     408 ..     333     408 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 1.4e-32
                   EEEEEEE-TTS-EEEE-GTT---TT-EEE-CCCCCCTT--TT-EEEEEEE--....-SSS-SEEECEECEETTEEXX CS
  Rho_RNA_bind   1 veGiLeilpdgygFlRtsnylpgpedvYVsasqirkfgLrtGDaveGkvrpp....kerekynaLlrvesvngeepe 73 
                   v+Gi+++l d+y+F+Rt++yl+gp+dvYVs+sqi+k+gLr+GDa++G+vr++    ++r+kyn+L+r++++ng+epe
    KIR63248.1 333 VAGIIDVL-DNYAFVRTTGYLAGPNDVYVSMSQIKKYGLRRGDAITGAVRAArdgeQRRDKYNPLVRLDTINGMEPE 408
                   58******.******************************************977776699***************97 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   3.6e-25   1.3e-21       2     211 ..     439     643 ..     438     645 .. 0.92

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 3.6e-25
                  SHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS..S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   2 irvlDalfpivqGqrtlipgafgvGktvisqslskqsnsd..d.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitl 96 
                   rv+D+++pi++Gqr li++  + Gkt+++q++++  +++  +    +v++ er +ev+++ ++++ +       ++a+t ++p+     ++ ++i  
   KIR63248.1 439 TRVIDLVMPIGKGQRALIVSPPKAGKTMVLQAIANAITHNnpEcHLMVVLVDERPEEVTDMQRSVKGE-------VIAATFDRPPQDHTTVAELAIER 529
                  59*********************************98777555788999***********99888764.......79********************* PP

                  HHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHH.HHHHHHSSEEEEB CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  ATP-synt_ab  97 AEyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvt.tatlgitdgfivL 193
                  A  + + g++v++++ds++r  ++++  + + g++  + g  ++  +   +++  a ++ ++ Gs+ti+a+  ++ g + d v  ++  g  ++ + L
   KIR63248.1 530 AKRLVELGHDVVVLLDSVTRLGRSYNLAAPASGRIM-SGGIDSTALYPPKRFLGAARNI-ENGGSLTILATALVETGSMADTVIfEEFKGTGNAELKL 625
                  *************************99999999986.5899******************.689****************99875277788889***** PP

                  -HHHHHTTBSSSBCTTTE CS
                  xxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 194 dkklaqrkhfPainvlvS 211
                  d+k+a+++ fPa++v++S
   KIR63248.1 626 DRKIADKRTFPAVDVSAS 643
                  ****************98 PP

>> Rho_N  Rho termination factor, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   9.5e-14   3.4e-10       2      38 ..      33      69 ..      32      72 .. 0.96
   2 ?   -2.8   0.0       1.8   6.5e+03      22      32 ..     642     652 ..     641     653 .. 0.82

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 9.5e-14
                HHHS-HHHHHHHHHHTT-TTGGGS-HHHHHHHHHHGG CS
       Rho_N  2 LkektlseLraiAkelgienysrlRKqdLIfaIlkaq 38
                L ++ l+eL+ +A +lgi +++r+RK++LI aI ++q
  KIR63248.1 33 LSAMLLPELQSLAASLGISGTARMRKGELISAISERQ 69
                789******************************9998 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.8
                 GGGS-HHHHHH CS
       Rho_N  22 ysrlRKqdLIf 32 
                 +s+ RK ++  
  KIR63248.1 642 ASGTRKEEILL 652
                 7999****975 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.2e-05     0.042      12      97 ..     463     554 ..     460     569 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
                 CHHHHHHHHHHHHCTS-SCCCC-SEEEEE..ETTTTTTS-...-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE.......EEEE-STT-SS-T CS
       NACHT  12 GKTtLlqklalawaegklpqgafklvFfl..slrelsrsgnarsladllfsqlpepaapvsevwavllelperlL.......lilDglDelvtdl 97 
                 GKT+ lq +a a+ ++++++    +v ++  +  e+++ +++    +++++ ++ p +++++v ++ +e+++rl+        +lD++ +l +  
  KIR63248.1 463 GKTMVLQAIANAITHNNPECH--LMVVLVdeRPEEVTDMQRS-VKGEVIAATFDRPPQDHTTVAELAIERAKRLVelghdvvVLLDSVTRLGRSY 554
                 *****************8884..3333331134455555544.6679***************999999999999999999999999998887765 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  10.1    0.0023       8.1     199     360 ..      95     284 ..      17     289 .. 0.42

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0023
       TFIIA 199 qqqqqqqqqqqqqqqvqqqqqe.........esqqaqqasqe....qvagsqvessqtdgaedaleeespv.....legelsaeeeagaqkeelsreei 279
                 +++++q ++ + q+ +  +  +         +         +    + a+s+++ ++t  ae  +ee +p+       +   ae+ +g   e  +re++
  KIR63248.1  95 RAEVTQAPSGTDQNRAPAEPAAapaegrtrtR---------RsravAAAESRPAEAETRPAETRAEE-PPAaatpaTGAAEPAERVEGR-RERGGREQA 182
                 11122222222222111111112221111110.........01222111122222222222222222.111232212222223333333.455666666 PP

       TFIIA 280 dri.reealkakelekeskkkkraeessladlseilqlDGagddsde.......................eeeeeesdedsdsessddedeq.veEDpl 353
                 dr  r  + ++ e+ +++++++r   + ++++ +  ++D  gd +++                       e ++ ++  d  + ++ ++ +q +e D  
  KIR63248.1 183 DRAeRGDRAERAERGERAERADRG--ERAERTDRSERVDRGGDRNERgeradraergerdrndrgeraerERGDRNERADRGDRNDRNDRGQrAERD-- 277
                 666333333333344444443332..33334455556666566555555666666666666665666554444444444433222333222234444.. PP

       TFIIA 354 NSdDDvd 360
                 N +DD d
  KIR63248.1 278 NGGDDDD 284
                 5555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.49
# Mc/sec: 4293.73
//
Query:       KIR63249.1  [L=74]
Description: 50S ribosomal protein L31 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-32  110.5   0.9    3.8e-32  110.3   0.9    1.0  1  Ribosomal_L31  Ribosomal protein L31


Domain annotation for each model (and alignments):
>> Ribosomal_L31  Ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.9   2.1e-36   3.8e-32       1      67 []       1      66 [.       1      66 [. 0.98

  Alignments for each domain:
  == domain 1  score: 110.3 bits;  conditional E-value: 2.1e-36
  Ribosomal_L31  1 mKkgiHPeyrevvvkcacgeefltrStlkekpeikvdvcsksHPfYtGkqklvdtaGrvekFkkryg 67
                   mK++iHPey ++ v+c+cg++f+trSt  +  +i+v++cs++HPfYtGkq+++dtaGrv+kF+++y+
     KIR63249.1  1 MKPNIHPEYTTTEVTCSCGSTFTTRST-AKGGSIHVETCSACHPFYTGKQRVLDTAGRVAKFQQKYA 66
                   9**************************.899***********************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 516.38
//
Query:       KIR63250.1  [L=362]
Description: peptide chain release factor 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-63  212.7   0.1    9.4e-63  211.6   0.0    1.6  2  PCRF          PCRF domain
    3.7e-42  142.9   0.8    8.1e-42  141.8   0.8    1.6  1  RF-1          RF-1 domain
  ------ inclusion threshold ------
      0.062   13.1   0.0      0.098   12.5   0.0    1.3  1  MIR           MIR domain
       0.16   12.6   0.1       0.32   11.6   0.1    1.4  1  MRP-63        Mitochondrial ribosome protein 63
       0.56   10.4   4.0       0.82    9.8   0.5    2.2  2  DUF4055       Domain of unknown function (DUF4055)


Domain annotation for each model (and alignments):
>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.6   0.0   2.6e-66   9.4e-63       3     193 .]      11     204 ..       9     204 .. 0.95
   2 ?   -2.2   0.1      0.87   3.1e+03      63      72 ..     277     286 ..     252     311 .. 0.42

  Alignments for each domain:
  == domain 1  score: 211.6 bits;  conditional E-value: 2.6e-66
                 HHHTTTTTST.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT....-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSSTTSEE CS
        PCRF   3 eeleelekklsdpevwedqekakklskelaeleeivealeeleealedleeakelleedeelaelaeeeleelekeleeleeelkklLlpkdendekna 101
                 +e++elek+l+dp++++dq+ a+++ +++ael+++ +a+ ele+a++dl++a+el++ed+++a     e+e++++ l +lee+l +lL+p+d++d+k++
  KIR63250.1  11 DEYAELEKRLADPAIHADQSVARRVGRRYAELSPLHKAAGELEQARADLAAARELAAEDPSFA----GEAESIAAGLPALEERLAELLIPRDPHDAKDV 105
                 79*****************************************************99***999....6999**************************** PP

                 EEEEEE-SSTHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEESSS.SEEEEEEEEE.......STTHHHHHGGG-EEEEEEEE-TTSSS--EEEEEEEE CS
        PCRF 102 ileiraGaGGdeaalfaedLlrmYtryaerkgwkvevldaseeeagGikevtleie.......gegaYgkLkfEsGvHRvqRvpetesqgrihTStatV 193
                 i+ei+aG+GG+e+alfa+dLlrmYtryaer+gw +ev+da+++++gG+k+v+l+i+       g+g++++Lk+E GvHRvqRvp+tesqgrihTS+a V
  KIR63250.1 106 IVEIKAGEGGEESALFAGDLLRMYTRYAERRGWLTEVIDAQDSDLGGVKDVSLAIKtkgvpegGNGVWSRLKWEGGVHRVQRVPVTESQGRIHTSAAGV 204
                 ********************************************************4444444447*******************************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.87
                 -S-..-GGGT CS
        PCRF  63 elaelaeeel 72 
                  l + a+e++
  KIR63250.1 277 RLLAAAQEQA 286
                 1222222222 PP

>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.8   0.8   2.3e-45   8.1e-42       2     116 .]     212     321 ..     211     321 .. 0.89

  Alignments for each domain:
  == domain 1  score: 141.8 bits;  conditional E-value: 2.3e-45
                 CCCCE--GGGEEEEEE---SSSSSSGCSSSCEEEEEETTTTEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCHTTTTT-.S.-S---S.-- CS
        RF-1   2 eieieidekdleidtfrssGaGGQnVNktesaVrlthlptgvivvecqeeRsqekNrekAlerLkaklkekeleeekeeekkrrvkkekkkigtgs.se 99 
                 +++++id++dl+id+frssG+GGQ+VN+t+saVr+th+ptg ivv+cq+e+sq +Nre+A+++L+a+l ++ +e+ +++++ +r    k++++t + se
  KIR63250.1 212 DVDVTIDPNDLRIDVFRSSGPGGQSVNTTDSAVRITHVPTG-IVVSCQNEKSQLQNREQAMRILRARLLAAAQEQADAAASDAR----KAQVRTVDrSE 305
                 6899*************************************.8*************************7764555444444444....358999999** PP

                 ECEEEECGCTTEEEETT CS
        RF-1 100 kiRtynkkpqsrvkdhr 116
                 +iRtyn+ pq+r++dhr
  KIR63250.1 306 RIRTYNF-PQNRITDHR 321
                 *******.********9 PP

>> MIR  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.7e-05     0.098     115     165 ..     220     268 ..     181     277 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
         MIR 115 nDk.veifekksttgmksaklvprdsyvrlqHvvtgcwLhstsvklkkekfe 165
                 nD  +++f+   ++g + +++ + ds vr+ Hv tg +++ ++ k + ++ e
  KIR63250.1 220 NDLrIDVFR---SSGPGGQSVNTTDSAVRITHVPTGIVVSCQNEKSQLQNRE 268
                 666666774...789999************************9997665555 PP

>> MRP-63  Mitochondrial ribosome protein 63
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   8.9e-05      0.32      21      82 ..     258     321 ..     252     325 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.9e-05
      MRP-63  21 eklvkrleieeeneyyLsrPYLtkeqesghakerrkkekk...lkkikekkkrakfpkhvtiaer 82 
                 ++ + +l+  e+++ +L+   L ++qe+  a+++ +++++   +++ +  ++  +fp+++  ++r
  KIR63250.1 258 QNEKSQLQNREQAMRILRARLLAAAQEQADAAASDARKAQvrtVDRSERIRT-YNFPQNRITDHR 321
                 5667899*********************999999888877555555666666.599999977776 PP

>> DUF4055  Domain of unknown function (DUF4055)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2       0.1   3.7e+02      80     124 ..      11      56 ..       2      62 .. 0.76
   2 ?    9.8   0.5   0.00023      0.82      70     105 ..     259     295 ..     237     301 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.1
     DUF4055  80 kqmaalGarlle.ektateTatqaaieaeaenSvLallasnledal 124
                 ++ a l  rl   +  a++++  +  ++ ae S+L+ +a++le+a 
  KIR63250.1  11 DEYAELEKRLADpAIHADQSVARRVGRRYAELSPLHKAAGELEQAR 56 
                 555555666666666788889999999***************9985 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00023
     DUF4055  70 agkealdrlekqmaalGarlle.ektateTatqaaie 105
                   k++l+++e+ m+ l arll+ +++++ +a   a +
  KIR63250.1 259 NEKSQLQNREQAMRILRARLLAaAQEQADAAASDARK 295
                 56899*****************655555555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2569.51
//
Query:       KIR63251.1  [L=516]
Description: diguanylate cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-31  108.7   0.0      5e-31  107.6   0.0    1.6  1  GGDEF     Diguanylate cyclase, GGDEF domain
  ------ inclusion threshold ------
       0.72   10.2  27.3       0.31   11.3   3.6    4.8  5  TPR_12    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6   0.0   5.6e-35     5e-31       1     157 [.     359     512 ..     359     515 .. 0.90

  Alignments for each domain:
  == domain 1  score: 107.6 bits;  conditional E-value: 5.6e-35
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 a +D+lTgLpNRr le++++  ++  +    ++++ ++dld Fk++n ++Gh++GD vLq++a  +++++r++d+vaR+ggdeF+++l+ +  +eaa++
  KIR63251.1 359 ALTDPLTGLPNRRRLERYIAAVVAGGE----RVVIGVCDLDGFKAVNTRHGHHSGDLVLQRIAGVINRVMRRGDFVARYGGDEFVVVLSGAGMAEAADV 453
                 679****************99998875....599***************************************************************** PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE.....-TTS-HHHHHHHHHHHHHHHHHC CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialap...peegedleellkeAdealyeaKka 157
                 a+ri++++++ + +  + g++  v ++iG a ++   p     +   +++Ad+ + +aK++
  KIR63251.1 454 ARRIEAAVRTEDWEALVPGTP--VGVTIGFAEVEangPGLRGAIGAAFETADREMLAAKNR 512
                 ********9999888888888..7888888888632344456788899999*****99997 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.4     0.042   3.7e+02      44      67 ..      53      76 ..      46      82 .. 0.83
   2 ?   11.3   3.6   3.5e-05      0.31       7      59 ..      90     142 ..      85     157 .. 0.84
   3 ?   -1.4   0.1      0.32   2.9e+03      37      58 ..     183     204 ..     174     213 .. 0.69
   4 ?    4.3   0.1    0.0056        50      37      70 ..     249     283 ..     216     285 .. 0.76
   5 ?    9.8   3.3    0.0001      0.92      14      75 ..     269     324 ..     256     326 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.042
      TPR_12 44 tattlrnLgrlyralgryeeAlel 67
                 +++l+nLgr+ +++   eeA ++
  KIR63251.1 53 RLSALINLGRTAEYTRAIEEASAA 76
                6789*******9999888888765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 3.5e-05
      TPR_12   7 nnlaavl.rrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralg 59 
                 n laa+  +++g +d + ++l ka ++  ++ +pd+ +ta+  ++L+++y++l 
  KIR63251.1  90 NALAALAaHHQGALDRCVTHLVKAARALGAVEDPDR-DTAWGWHDLAMAYSYLS 142
                 4556666488*************************9.*************9875 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.32
      TPR_12  37 lGpdhpltattlrnLgrlyral 58 
                 +++d+++ +++lr+ +  + ++
  KIR63251.1 183 HNGDSDGCLRVLRDVAADLGRF 204
                 7899999999999999887655 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.0056
      TPR_12  37 lGpdhpltattlrnLgrlyr..algryeeAlellee 70 
                 +G d+ + a+ +r Lg++++  a+g++ eA+ +l  
  KIR63251.1 249 HGADS-ARARDMRQLGQVCLaiAAGNPIEAITRLDT 283
                 78888.9999********753577999999988765 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.0001
      TPR_12  14 rrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                  ++g+  eA++ l++a    r +   + +++a+  r  +++y ++g++++A+++ ++a ++a
  KIR63251.1 269 IAAGNPIEAITRLDTA----RVS--NETLGAAEPARLRSIAYARAGDHAAAHRADRHAFRLA 324
                 3589999999999999....333..56788***************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3401.39
//
Query:       KIR63252.1  [L=216]
Description: translation factor SUA5 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-38  130.5   0.0    5.1e-38  130.3   0.0    1.0  1  Sua5_yciO_yrdC  Telomere recombination


Domain annotation for each model (and alignments):
>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.3   0.0   2.9e-42   5.1e-38       2     179 .]      21     196 ..      20     196 .. 0.96

  Alignments for each domain:
  == domain 1  score: 130.3 bits;  conditional E-value: 2.9e-42
                     HHHTTSEEEEE-SSSEEEEEETTSHHHHHHHHHHHTSHCCC--EEEESSCCCCCCCC-TC--HHHHHHHHCT-SSSCEEEEE..E-TS-HHH..H CS
  Sua5_yciO_yrdC   2 alrkGgivaiptetvYgLacdatneeaverlreiKgrpsdkplavlvasledlkklaeseveeealkllerfwPGpitlllkrskeklpkev..a 94 
                     a+++G++v++pt+tvYg+++da  + av+ l ++Kg   ++  +vl+ s  +l+ l+   +++ a  l+e+fwPG +t+++++s + l+ ++   
      KIR63252.1  21 AVKNGELVVLPTDTVYGIGADAFTPYAVKALSDAKGGT-RQAPPVLIGSRHTLDGLVF-TLPRSARDLVEAFWPGALTIIVEHSPS-LSWDLgdE 112
                     789***********************************.88889*************9.***********************8666.88888778 PP

                     TTTTEEEEEE-SSHHHHHHHHHCTS-EEEEES-STTS-S-SSHHHHHHHC-TTSECB-SS---SSS---EEEETTSSTSSECEXX CS
  Sua5_yciO_yrdC  95 pglktvGvrlPdtplarlLlealgeplvaTSanlsgepsitdaeeveeelgeivdlildggeiavgvdstVvdltegkpkilRrG 179
                      g++ v+vr+P +p+a+++l+++g p+++ San  g+p++ +ae+++e+lg  v+++l++ge+  +v+st+vdlt++ p+++R G
      KIR63252.1 113 TGSGVVAVRMPLHPVALEVLRETG-PMAVASANKVGQPAAVTAEAAREQLGYTVRAYLEAGECPDPVPSTIVDLTGEAPTLVRAG 196
                     89999*****************98.**********************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1640.44
//
Query:       KIR63253.1  [L=203]
Description: phosphotyrosine protein phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-20   73.4   0.0    3.7e-16   59.8   0.0    2.4  2  LMWPc     Low molecular weight phosphotyrosine protein phosph


Domain annotation for each model (and alignments):
>> LMWPc  Low molecular weight phosphotyrosine protein phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0     2e-20   3.7e-16       1     112 [.       6     126 ..       6     140 .. 0.84
   2 !   10.8   0.0   2.6e-05      0.47     114     140 ..     170     196 ..     163     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 2e-20
                 EEEEESSSSSHHHHHHHHH....HHHHHHT.....T-CCCEEEEEEESTST.TT-B--HHHHHHHHHTTS--TT-BB-BS-HHHHHHSSEEEESSHHHH CS
       LMWPc   1 vlfvClgNicRSpmAealf....rkeleka.....gleekvevdSaGtgal.vgkradpravevlkekgislsghvarqlskeelaelDlilamdeenk 89 
                 vl vC+gNicRSpmAe+l+    r++l+++     ++++ ++  SaGtg++  g++++p a+  +  +g ++ g +ar+l+ + ++ +Dl+l+ +++++
  KIR63253.1   6 VLHVCMGNICRSPMAERLLalavRERLTRRggdpaDADALLHSHSAGTGGWhAGEEMNPPAARQVTARGGDVAGFAARKLRSDLIDAADLVLTATADQQ 104
                 789**************983333444444422222466667999******************************************************* PP

                 HHHHHHCCTTGGGGEEEGGGGSS CS
       LMWPc  90 releslapekekakvkllgeyte 112
                 + + +l p  +++++++lge+++
  KIR63253.1 105 EYVVALRPD-AASRTFVLGEFGR 126
                 *********.889******9954 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 2.6e-05
                 SS---HTTSSHHHHHHHHHHHHHHHHH CS
       LMWPc 114 ldieDPyygeieafeevldeieeavkk 140
                  d++DP++ +++ f +v deiee v+ 
  KIR63253.1 170 DDLDDPWGRGDQCFSRVADEIEETVHP 196
                 589********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1540.00
//
Query:       KIR63254.1  [L=706]
Description: glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-57  191.5   0.0    1.2e-56  191.0   0.0    1.2  1  Transgly        Transglycosylase
    1.4e-21   77.0   0.0    2.9e-21   76.0   0.0    1.4  1  Transpeptidase  Penicillin binding protein transpeptidase dom


Domain annotation for each model (and alignments):
>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.0   0.0   1.4e-60   1.2e-56       4     177 ..      72     257 ..      68     258 .. 0.92

  Alignments for each domain:
  == domain 1  score: 191.0 bits;  conditional E-value: 1.4e-60
    Transgly   4 llaeleeeenrelvkleeippalkkavvaiEDrrFyehkGvdlkgiarAvlknlksgkssqGgSTitqQlvknlfl............seertlerKlk 90 
                 l++++ + e+r+ v+l++++ ++++avva+ED rFyehkGvd++g++rA+ +n + g  +qG+ST+t+Q+v+n++              +e tl+rK+k
  KIR63254.1  72 LITSF-YTEDRVDVPLAQVAATMRQAVVAAEDVRFYEHKGVDPRGVIRAFTANRRDGAPRQGASTLTMQYVRNVLAgdpnlteeqrakATEVTLTRKIK 169
                 67778.799****************************************************************87788877655433224589****** PP

    Transgly  91 eavlAlklekklsKdeILeaYlNsvylgrevyGieaAarayFgkdakdLtlaeaalLagllkaPsrynple.npeeakkrrkvvlerm 177
                 e+ +Al++e++lsKd+IL+ YlN +y+g ++yG++aA+++yF+k++++Ltlae+alLagl+++P + +p++ + ++a +rr +vl+rm
  KIR63254.1 170 EMRYALAVERELSKDQILAGYLNIAYFGAGAYGVGAASKRYFSKSPAKLTLAESALLAGLVRSPDTDDPINgDADAALARRAYVLDRM 257
                 *********************************************************************884699999*********9 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   3.2e-25   2.9e-21       5     289 ..     364     654 ..     361     670 .. 0.79

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 3.2e-25
                     EEETTT-BEEEEEEESE-TTTHHCC........TCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEET.....TSS...ECT CS
  Transpeptidase   5 vldaktgevlamaskpsydpnakvg........kneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiq.....ggqs..ikd 84 
                     v+++ tg+vla+a +++y +++  +         n+ +a + + + y+ GStfK+++++aaleag +  d+ +d ++  +      gg +   + 
      KIR63254.1 364 VVQPGTGRVLALAVNRNYSVEENPQgwrnrpntVNQLVAGGGAITGYQAGSTFKIFAVLAALEAG-LPLDTLFDAPPRIVTrfpvtGGPAdcRGR 457
                     789**************98777766788798776666677778899*******************.9*9****9999765411111344367677 PP

                     CCCC-...SSSSEE.EHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--B--SSHHHHHHHHHTTT.SBB-HHHHHHHHH CS
  Transpeptidase  85 weqdn...kgsegi.tlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaGvptrkwlegatisfgiG.ltvtplqlaqaya 174
                     w   n   +g  g  t+ +a+  S+ntyf++l++++gad++ ++++++g+  +  +d +  + G   r w  g    f+ G  + tpl la aya
      KIR63254.1 458 WCPVNadpVGMDGYrTMWDAFGRSVNTYFAWLTERVGADRVVEMAERLGIRLRAESDAKMARYG--ARDW--GP---FTLGvAATTPLDLAGAYA 545
                     777777777777777*************************************************..8899..55...88898899********** PP

                     HHHTTTEEE--BSEEEEEECTTEEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCT.......TTTGCG..TCTTS--EEEEEEEEECSSSTTSEE CS
  Transpeptidase 175 aiangGklvkPhlvkaivdpdgvrkvkpkelnklpisketaekvkeglkgvvsrg.......sgtata..avegykvagKTGTAevagkkgngkk 260
                     a+a +G+  +P  v +i d  g +    +++ +++ + + a+   ++ +  v ++        gta+      g +vagKTG  e +g +     
      KIR63254.1 546 AVAAEGIWCAPTPVVRILDAAGREVAAGRPDCRQVLDTDVARGAADAARCPVGDQsmyggcaGGTAQDlrGRLGRPVAGKTGSSEGNGTE----- 635
                     ********************9966666666777777777777777777766666666556644455557789999**********99833..... PP

                     EEEEEEEEEEEESTTS-SEEEEEEECTCS CS
  Transpeptidase 261 egakiswfvgyapadnpkyavavlieqpk 289
                           ++v+++p+    +ava +  +p+
      KIR63254.1 636 ------TVVAFTPQ----LAVASIAANPD 654
                     ......67888875....66665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4874.44
//
Query:       KIR63255.1  [L=429]
Description: serine hydroxymethyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.6e-159  529.0   0.0   6.6e-159  528.8   0.0    1.0  1  SHMT             Serine hydroxymethyltransferase
    4.9e-08   32.6   0.1    7.5e-08   32.0   0.1    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
    6.1e-07   28.9   0.0      1e-06   28.2   0.0    1.4  1  Aminotran_1_2    Aminotransferase class I and II
    0.00072   18.6   0.0    0.00099   18.2   0.0    1.2  1  Aminotran_5      Aminotransferase class-V
      0.001   17.7   0.0     0.0014   17.3   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
     0.0081   15.5   0.0      0.016   14.5   0.0    1.5  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  528.8   0.0  2.2e-162  6.6e-159       1     399 []      16     392 ..      16     392 .. 0.99

  Alignments for each domain:
  == domain 1  score: 528.8 bits;  conditional E-value: 2.2e-162
                 HHHHTHHHHHHHHHHHHHHHHSEE-STT-----HHHHHHHTSGGGG----EETTEESSST-HHHHHHHHHHHHHHHHHCT-STTTEEEE---SSHHHHH CS
        SHMT   1 leesdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGcefvdeveelaqdrakelfkldpakwgvnvqplsGsqan 99 
                 l+++dpe+a ++  e +r + +++liasen+ts+avl alGs+ltnkyaeGyPG+ryyGGc  vd++ee+  +rakelf+++    ++n+qp+sG+ an
  KIR63255.1  16 LSATDPEIAGVVLGELDRLRGGLQLIASENLTSPAVLAALGSTLTNKYAEGYPGRRYYGGCAEVDRAEEIGVARAKELFDAE----HANLQPHSGASAN 110
                 5789******************************************************************************....************* PP

                 HHHHHHHT-TT-EEEEESCTTTSTGGGT-BTSS-B-SHHHHHSEEEEE-B-TTTSSB-HHHHHHHHHHH--SEEEEE-SST-S---HHHHHHHHHHTT- CS
        SHMT 100 lavytallepgdrilgldladGGhlthGakveskkisassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevga 198
                 la y+al++pgd++l++dl++GGhlthG++v++     s+k+f++v y+v+k+t+lidyde++  a++++Pk+i++G++ay+rlid+ar+reiadevga
  KIR63255.1 111 LAAYAALVQPGDTVLAMDLPHGGHLTHGSRVNF-----SGKWFHTVGYRVRKDTELIDYDEVRDLARAHRPKMIICGATAYPRLIDFARFREIADEVGA 204
                 ********************************9.....************************************************************* PP

                 EEEEE-GGGHHHHHTTSS--GCCTSSEEEEESSSTT-S-S-EEEEEC-SEEEEETTTEEEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHCTSHH CS
        SHMT 199 yllvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillrkgvksvdktgkevleelekkinsavfPglqGGPlnhviaakavalkealepe 297
                 yl+vd ah+ Glva+  +psP+++advv +tthk lrGprgg+il+r              e l+++i++avfP +qGGPl+h++aakaval+ea++pe
  KIR63255.1 205 YLMVDAAHFIGLVAGRAVPSPVPHADVVCATTHKVLRGPRGGMILCR--------------ESLAQRIDKAVFPFTQGGPLMHAVAAKAVALREAAQPE 289
                 ***********************************************..............89************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTS.STTTT-SEEEEESHHHHHTT--HHHHHHH CS
        SHMT 298 fkvyqkqvlknakalaealkekgyklvsgGtdnhlvlvdlrekgldGkraekvlekvnitankntvPgd.ksalvtsGlrlGtpaltsrgfkeedlekv 395
                 f++y+ qv++na+ala  l  +g++ vsgGtd+hl l+dlr  g++G++ae+ +++++it nkn++P+d + ++v+sG+r+Gtp++t++g++ee++++v
  KIR63255.1 290 FRAYAAQVVANARALAAGLAAEGMRPVSGGTDTHLALLDLRAAGVSGAEAEARCDAAAITLNKNAIPYDpQPPMVASGIRVGTPSVTTQGMGEEEMRRV 388
                 *********************************************************************999*************************** PP

                 HHHH CS
        SHMT 396 akfi 399
                 a++i
  KIR63255.1 389 AALI 392
                 9876 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.1   2.5e-11   7.5e-08      39     246 ..      88     319 ..      58     366 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 2.5e-11
                      HHHHHHTT-SEE.EEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTT...TBE-HHHHHHHS--S-TTS-EE CS
  Beta_elim_lyase  39 davaelfgkeaa.lfvpqGtaAnsillkillqrgeevivtepahihfdetgaiaelagvklrdlknkea...Gkmdlekleaaikevgaheeki 128
                      ++++elf++e+a l  ++G  An  ++++l+q+g+ v++ +  h+   + g  + ++g  ++++  +       +d ++++++ ++      ++
       KIR63255.1  88 ARAKELFDAEHAnLQPHSGASANLAAYAALVQPGDTVLAMDLPHGGHLTHGSRVNFSGKWFHTVGYRVRkdtELIDYDEVRDLARA-----HRP 176
                      47899****96626788*****************************************9999987444433488999****99999.....467 PP

                      EEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--SS-EEEEE-HH......... CS
  Beta_elim_lyase 129 klisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllanvGgvlafrddel....... 215
                      k+i+   T          l   ++ ++ia++ g  l++D+A f+  +   g  v + + ++D+v++   K l  + Gg+++ r++ +       
       KIR63255.1 177 KMIICGATAYP------RLIDFARFREIADEVGAYLMVDAAHFIGLV--AGRAVPSPVPHADVVCATTHKVLRGPRGGMILCRESLAqridkav 262
                      88888888774......67778888999****************977..6777888899**************************779999999 PP

                      ..............................HHHHHHHHHHHHT---SSTHHHHH..HHH CS
  Beta_elim_lyase 216 ............................edylaerveqrkylggglrqagvlaaleagi 246
                                                    y a+ v+ +++l+ gl   g+  +   g 
       KIR63255.1 263 fpftqggplmhavaakavalreaaqpefRAYAAQVVANARALAAGLAAEGMRPV--SGG 319
                      999999999999999999999999988878888888888888888888888777..333 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   3.5e-10     1e-06      67     315 ..      98     332 ..      80     387 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 3.5e-10
                    GGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHH...HHHHTTSEEEEEEBEET.TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS- CS
  Aminotran_1_2  67 reaavvvgsGagaliealifllklnpgdeilvpdptyasykn...ilrlsggevvryplyse.edfhldlealeealkeapegnkktkvilvesph 158
                    + a+++  sGa+a+++a ++l +  pgd +l+ d+ ++ + +    ++ sg  ++++ ++   ++  +d +++ + l++a+    ++k+i+     
     KIR63255.1  98 H-ANLQPHSGASANLAAYAALVQ--PGDTVLAMDLPHGGHLThgsRVNFSGKWFHTVGYRVRkDTELIDYDEVRD-LARAH----RPKMIICGATA 185
                    3.499****************99..******99998877654111566666668888877773556689999999.55555....77888877777 PP

                    TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTT.EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS. CS
  Aminotran_1_2 159 NPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepn.llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls. 252
                     P   +++ +  +++   a++ +++l+vD a+ ++          ra  ++ p+ ++++ +  K +   G R G+il+ + +++ + k++ pf+  
     KIR63255.1 186 YP--RLIDFARFREI---ADEVGAYLMVDAAHFIGLVAG------RAVPSPVPHaDVVCATTHKVL--RGPRGGMILCRESLAQRIDKAVFPFTQg 268
                    77..68888889999...*************96665552......666677777779999998865..56666*******************9996 PP

                    SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTEEEECCS.CSSEEEEEETHH CS
  Aminotran_1_2 253 ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasq.sgmflltdlsae 315
                      l+ a++a+a+   +  q e+ + ++++ ++++ l ++La+ g   ++    + + l dl+a+
     KIR63255.1 269 GPLMHAVAAKAVALREAAQPEFRAYAAQVVANARALAAGLAAEGMRPVSGGtDTHLALLDLRAA 332
                    44445555556666666667********************999876655433555555555555 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.3e-07   0.00099      73     243 ..     108     284 ..      46     314 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.3e-07
                  HHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTE...EEEEEEBETTSCBEGGGHHHH--.TTEEEEEEESBETTTTEB--HHHHHHHHH CS
  Aminotran_5  73 ainlvalslarslkpgdeivvteaehhanlvpwqelakrtga...kvkvipldeegeldldeleklln.ektklvaithvsnvtGtiqpveeigklak 166
                  + nl+a++++  ++pgd+++  ++ h + l    +++ + g    +v +   +++ ++d de+++l + +++k ++i+   ++   + +++++ ++a 
   KIR63255.1 108 SANLAAYAAL--VQPGDTVLAMDLPHGGHLTHGSRVN-FSGKwfhTVGYRVRKDTELIDYDEVRDLARaHRPK-MIICG-ATAYPRLIDFARFREIAD 200
                  4566666653..7888888888888888887777775.55541114444445667778889998888734444.44544.4667789999******** PP

                  HTT-EEEEE-TTTTT...TS---HHHHTESEEEEETTT.TTSSTT-EEEEEEHHHHHTS......SS.STTSEEEEETTEEEEHC CS
  Aminotran_5 167 kkgalvlvDaaqavg...hipidvkklgvDflafsghK.llgPtGiGvlyvrkellekl....eplllggemveevsleettfae 243
                  ++ga+++vDaa  +g    + +      +D++ +++hK l gP G G++ +r++l +++     p+  gg +++ v  +   ++e
   KIR63255.1 201 EVGAYLMVDAAHFIGlvaGRAVPSPVPHADVVCATTHKvLRGPRG-GMILCRESLAQRIdkavFPFTQGGPLMHAVAAKAVALRE 284
                  ***********98763337888889999999*******999****.999999999998844345777788888777776666554 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.6e-07    0.0014      71     212 ..     101     249 ..      88     311 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.6e-07
                      EEESSHHHHHHHHHHTTS-TTEEEEEESTSSHH......HHHHHHHTHHHTTC....EEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT--- CS
  Cys_Met_Meta_PP  71 lavssGmaAiaaailallkaGdeivvsddlYgg......tqrllkkvlkklgi....evkfvdtsdleelekaikentklvylEtptnpllkvv 154
                      l   sG +A  aa  al++ Gd ++++d  +gg        ++  k ++ +g     +++ +d +++ +l++a   + k++   + + p   ++
       KIR63255.1 101 LQPHSGASANLAAYAALVQPGDTVLAMDLPHGGhlthgsRVNFSGKWFHTVGYrvrkDTELIDYDEVRDLARAH--RPKMIICGATAYPR--LI 190
                      4457**********************998777633222123444444555554000055666777777776665..56789999999886..69 PP

                      -HHHHHHHHHHTT-EEEEEGTTTHT.TTS-GGGGT...-SEEEEETTTTTTCSSS--EEEEE CS
  Cys_Met_Meta_PP 155 DiekiaklakkagvlvvvDntfasp.llqrplklg...aDivvhSaTKylgGhsdvvaGviv 212
                      D+++  ++a ++g+ ++vD++   + +  r++      aD+v+  + K l G     +G+i+
       KIR63255.1 191 DFARFREIADEVGAYLMVDAAHFIGlVAGRAVPSPvphADVVCATTHKVLRGPR---GGMIL 249
                      ********************9776634445554433339*****9999999976...45555 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.3e-06     0.016      46     185 ..     105     250 ..      89     262 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.3e-06
                      SHHHHHHHHHHHTTTTTT-EEEEESS...S-THHHHHHHHTT-..EEEEE-B-TTTSSB-GGGCGGG--TTE.EEEE.EB-GGGB---HHHHHH CS
  DegT_DnrJ_EryC1  46 sGtaAlhlaLralgvgpgdeVIvpsl...tFvatanavlelga..kpvfvDvdpdtynidpaaieaaitert.kaIl.pVhlyGqvadmdalka 132
                      sG +A++ a+ al v+pgd+V+   l   + ++  + v  +g    +v   v +dt  id ++++ +    + k I+  + +y +  d+++ ++
       KIR63255.1 105 SGASANLAAYAAL-VQPGDTVLAMDLphgGHLTHGSRVNFSGKwfHTVGYRVRKDTELIDYDEVRDLARAHRpKMIIcGATAYPRLIDFARFRE 197
                      5666666665554.6666666654441113333333333333311445556889999999999999887766666551688999********** PP

                      HHHHCT-EEEEE-TT-TT-EETTEECCCSS.SEEEEE-BTTSSS-SSS-EEEEE CS
  DegT_DnrJ_EryC1 133 iaakhglkvieDaAhAlGatykgkkvGalg.daavfSFyptKnlttGeGGavvt 185
                      ia++ g +++ DaAh +G  ++g+ v +    a v+     K+l    GG+++ 
       KIR63255.1 198 IADEVGAYLMVDAAHFIGL-VAGRAVPSPVpHADVVCATTHKVLRGPRGGMILC 250
                      ***************9997.4566665433356666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2977.55
//
Query:       KIR63256.1  [L=138]
Description: hypothetical protein TK50_20620 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.004   17.5  13.7      0.004   17.5  13.7    1.4  1  ATP-synt_I  ATP synthase I chain
  ------ inclusion threshold ------
       0.67    8.9   4.5       0.89    8.5   4.5    1.1  1  ArAE_2_N    Putative ER transporter, 6TM, N-terminal


Domain annotation for each model (and alignments):
>> ATP-synt_I  ATP synthase I chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5  13.7   4.5e-07     0.004       3      99 ..      21     113 ..      19     114 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.5e-07
  ATP-synt_I   3 vliqlvllavlalgwlltgsasvalsallGglisvlpfalfalrvfrfsgalarkkkkivrslylg.eairlaltiallilalklvkelsllallvGl 99 
                 v +++v++a+ a++ +++g+a++al++++G ++ v +++l+   +   + a ar+++ ++  + +g ++ ++ l + ++++++ + +++ +++l +G+
  KIR63256.1  21 VAVSAVVAALGAAAGGVLGGADAALGVAAGVAVTVASYVLTTVVL---AWADARNPQLVLP-FGVGlYVAKFTLLGGVMVAVAST-GWAGVVPLCLGI 113
                 778999*************************99999999999999...5555788898888.****9******************.********9996 PP

>> ArAE_2_N  Putative ER transporter, 6TM, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.5   9.9e-05      0.89     139     212 ..      49     119 ..      44     120 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 9.9e-05
    ArAE_2_N 139 rvsvvyavllcvflffvgrlrakspkfalgaifgiIaadvfltyapmlPlfapgtlglallkPmgiglalkvvv 212
                  + +v++++ +++++++++  a++p++ l++ +g+ +a+ +l  ++m+ +    + g a + P  +g+a++vvv
  KIR63256.1  49 AGVAVTVASYVLTTVVLAWADARNPQLVLPFGVGLYVAKFTLLGGVMVAV---ASTGWAGVVPLCLGIAVGVVV 119
                 4559**********************************************...777888899*********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1065.08
//
Query:       KIR63257.1  [L=78]
Description: hypothetical protein TK50_20625 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-07   30.6  13.5    3.3e-07   30.4  13.5    1.1  1  ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transpor


Domain annotation for each model (and alignments):
>> ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4  13.5   1.8e-11   3.3e-07       5      53 ..      24      72 ..      20      73 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1.8e-11
  ATPase_gene1  5 sqiGielvapillggllGywLDkkfgtspwfliiglllGlaaGfynvyr 53
                  ++  ++l++++l+ g++G++ D+++ t+ + + ig++lG+a+G+ +v+r
    KIR63257.1 24 WTALSYLIGGMLVWGFIGWLVDQWLDTGGIATGIGVVLGMAGGIILVVR 72
                  677899****************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 535.60
//
Query:       KIR63258.1  [L=265]
Description: ATP synthase subunit A [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-52  177.7  30.1    3.5e-52  177.4  30.1    1.0  1  ATP-synt_A  ATP synthase A chain


Domain annotation for each model (and alignments):
>> ATP-synt_A  ATP synthase A chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.4  30.1   1.9e-56   3.5e-52       2     210 ..      43     257 ..      42     258 .. 0.88

  Alignments for each domain:
  == domain 1  score: 177.4 bits;  conditional E-value: 1.9e-56
                 HHHHHHHHHHHCCC.CCSS.T.TTT.SHHHHHHHHHHHHHH.HHHHHHCTSSSTXHHHHHHHHHHHHHHHHHCCHCCSST.TTTTTCHHHHHHHHHHHH CS
  ATP-synt_A   2 lttlivllilllllllatrkkkkkl.pgklqnlvealvefv.dnlvksvigkkkkkkffpliltlflfilvsNllgliPg.lraatadinvtlalAliv 97 
                 ++++i++ +l++++l++ rk   +l p+k q l+e ++ fv +n++ ++ig+  + +f+p++ tlf+fil+ N++ ++P+ +++++++i++++ lA+i+
  KIR63258.1  43 AMVWIAVGVLIIFFLATYRKP--QLvPTKKQWLAESIYGFVrNNIAVEMIGH-AGVRFAPYFTTLFCFILLTNFFAIVPLfQISPNSHIAFPAFLAVIS 138
                 5899***9*999997777744..344***************99*******95.789********************998746899************** PP

                 HHHHHHHHHHHHGG..GGCHHHSS..SCCCCHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHH..HHHH.....CCCTGCCCTTCHHHHHHHHH CS
  ATP-synt_A  98 fllvlilgikkkglkgyfkklfvp..plllvplllpielise.farpvsLalRLfgNifAGelllall..agll.....llllllavllsvlilllavl 186
                 +++++ +gi+++g++++fk+ ++p  p++++pll+pie++s+ ++rp+sLa+RLf+N+fAG++ll+++           + +   ++ +svl+++++++
  KIR63258.1 139 YVMFIWVGIRHHGFGKFFKNSLIPpaPWYILPLLIPIEFFSTfLVRPFSLAVRLFANMFAGHMLLLVFtlG--GfamlsANA--WLAPVSVLSWVMTIA 233
                 ********************995559****************99************************541..344433222..233456666789*** PP

                 HHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_A 187 llllelfvgfiQAfvFtlLtlvYi 210
                 l++le++v+++QA+vFt+Lt++Y+
  KIR63258.1 234 LTFLEFLVICLQAYVFTVLTASYV 257
                 ***********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1952.94
//
Query:       KIR63259.1  [L=77]
Description: ATP synthase subunit C [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-11   43.8   6.5    2.9e-11   43.5   6.5    1.1  1  ATP-synt_C       ATP synthase subunit C
  ------ inclusion threshold ------
       0.15   12.0   4.3       0.32   11.0   4.3    1.5  1  Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   6.5   3.2e-15   2.9e-11       3      59 ..      12      72 ..      10      73 .. 0.90

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 3.2e-15
                HHHHH.GGGHHHHHHHHHHHHHHHHHHHHSG...HHHHH...HHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C  3 aglavGlsalgsGigiGkagsagiravarnp...klftk...sliilafaeaialygLivali 59
                a++  Gl+a+g Gig+G +++a+i+++ar+p   +  ++   ++i++a++ea+al+g+ +++i
  KIR63259.1 12 AAIGYGLAAIGPGIGVGLVFAAYIQSTARQPessR--MTlpyVWIGFAVIEALALLGIAFGFI 72
                89999**************************7542..44567*****************9998 PP

>> Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.3   3.6e-05      0.32      14      77 ..       5      76 ..       2      77 .] 0.57

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.6e-05
  Abhydrolase_9_N 14 gvvsGlsaaiGYglGvllawlvrrllr.........lpepsrrvrrrlrlalavvalvvllvalvlaarwQre 77
                     ++v G +aaiGYgl+++   +   l++         +pe sr +   +++ +av+ ++ +l+ ++++  wQ +
       KIR63259.1  5 AAVEGSTAAIGYGLAAIGPGIGVGLVFaayiqstarQPESSRMTLPYVWIGFAVIEAL-ALLGIAFGFIWQGQ 76
                     6788888999998765433332222222333366645555555555666666666555.55566777888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 582.52
//
Query:       KIR63260.1  [L=179]
Description: ATP synthase F0F1 subunit B [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-28   97.7  11.9    6.7e-28   97.4  11.9    1.1  1  ATP-synt_B      ATP synthase B/B' CF(0)
     0.0039   16.8   0.8       0.02   14.5   0.8    2.0  1  Mt_ATP-synt_B   Mitochondrial ATP synthase B chain precursor 
     0.0059   14.2   2.7     0.0066   14.0   2.7    1.0  1  DUF3584         Protein of unknown function (DUF3584)
     0.0099   15.7   2.2      0.014   15.2   2.2    1.2  1  SurA_N_3        SurA N-terminal domain
  ------ inclusion threshold ------
      0.024   14.4   0.3      0.046   13.5   0.1    1.5  1  DUF2570         Protein of unknown function (DUF2570)
      0.029   14.3   0.2      0.042   13.9   0.2    1.2  1  DUF997          Protein of unknown function (DUF997)
      0.031   14.5   0.6      0.082   13.2   0.1    1.9  2  DUF948          Bacterial protein of unknown function (DUF948
      0.036   13.8   2.3      0.051   13.3   2.3    1.2  1  FAM184          Family with sequence similarity 184, A and B
      0.091   13.4   4.3      0.099   13.3   2.2    1.9  2  Hemerythrin     Hemerythrin HHE cation binding domain
        0.3   11.1   8.2        3.1    7.8   1.4    2.1  2  YscO-like       YscO-like protein
        1.7    9.4  20.5        0.4   11.4  10.9    2.3  2  KfrA_N          Plasmid replication region DNA-binding N-term
        3.4    7.4   8.9       0.36   10.5   2.9    2.2  2  DUF2937         Protein of unknown function (DUF2937)
        3.8    7.4   5.2         49    3.8   5.2    2.4  1  CBP4            CBP4


Domain annotation for each model (and alignments):
>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4  11.9   4.8e-31   6.7e-28       3     131 ..      24     152 ..      22     153 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.4 bits;  conditional E-value: 4.8e-31
  ATP-synt_B   3 vvnliallilvgllikfawkplkkvLdkReekIadeiaeAeerrkeaaallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaeaerlkesAa 101
                 vv  ia+++l  +l+kf+ +++ ++ + R ++I+ +i+ Ae++++ea++ll+++++ql+eAr +Aa+i+++A+++ae ++++i a+a++e +r++++++
  KIR63260.1  24 VVGGIAFILLCIVLMKFVFPRMEQTFQARVDAIEGGIKRAEAAQAEANQLLEQYRAQLAEARTDAAKIRDDARADAEGIRQDILAKAREESDRIIAAGK 122
                 56679********************************************************************************************** PP

  ATP-synt_B 102 aeIeqekdralaeLreqvvalavqiaekll 131
                 +++++e++++++eLr +v+ +av+ a+k++
  KIR63260.1 123 EQLAAERATIVRELRTEVGTIAVDLASKIV 152
                 ****************************96 PP

>> Mt_ATP-synt_B  Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.8   1.5e-05      0.02      20      75 ..      27      81 ..      17     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC CS
  Mt_ATP-synt_B 20 alcfigflilvakslgpsikefldkriekiqeelnqsrnlkeealkerieqekklq 75
                   ++ fi++ i++ k++ p +++++++r+++i+   + + + + ea ++++eq++ + 
     KIR63260.1 27 GIAFILLCIVLMKFVFPRMEQTFQARVDAIEGGIKRAEAAQAEA-NQLLEQYRAQL 81
                   589***********************************999665.56666666655 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   2.7   4.8e-06    0.0066     599     688 ..      44     138 ..      27     163 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.8e-06
     DUF3584 599 aseeeLrerlqaleealqsaeakqkqaeeelkqlnaeleeakravae....aatalknardt.lerlqnekesekdklekaiaerkqqaeeqlqk 688
                  +e++ ++r++a+e  ++ aea q++a++ l+q +a+l ea+  +a+    a++ ++  r++ l ++++e ++   + ++++a++++++ ++l++
  KIR63260.1  44 RMEQTFQARVDAIEGGIKRAEAAQAEANQLLEQYRAQLAEARTDAAKirddARADAEGIRQDiLAKAREESDRIIAAGKEQLAAERATIVRELRT 138
                 6899*********************************9999887765211144455554443267788888888888888899999888888875 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   2.2     1e-05     0.014      13     118 ..      28     137 ..      21     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1e-05
    SurA_N_3  13 iakillgliilaFvlwGvgsylsgsgns....vakVngekIsraefqqayrrqleqlrqqlggnldaelldelglrqqvldqlidealllqeakklgls 107
                 ia ill+++++ Fv+  +++ ++ + ++    + +    +  ++++ ++yr ql ++r    +  d++ +d++g+rq++l +  +e     +a k++l+
  KIR63260.1  28 IAFILLCIVLMKFVFPRMEQTFQARVDAieggIKRAEAAQAEANQLLEQYRAQLAEARTDAAKIRDDARADAEGIRQDILAKAREESDRIIAAGKEQLA 126
                 666777777777**9888887776663334457888888888888888888888888888877888888999*************************** PP

    SurA_N_3 108 vsdeevakeia 118
                 + ++ + +e++
  KIR63260.1 127 AERATIVRELR 137
                 ***99999986 PP

>> DUF2570  Protein of unknown function (DUF2570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   3.4e-05     0.046       3      86 ..      24     108 ..      22     115 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.4e-05
     DUF2570   3 ivgklaliilgLgvwlwsqsqkidsLraenkaqaqlieeqqkanqrLteqLeqerqavekqqkianelkakveeekeevkt.ilk 86 
                 +vg +a+i+l +  + ++  ++ ++ +a + a +  i++ ++a  + ++ Leq r    + +  a +++  +  ++e +++ il+
  KIR63260.1  24 VVGGIAFILLCIVLMKFVFPRMEQTFQARVDAIEGGIKRAEAAQAEANQLLEQYRAQLAEARTDAAKIRDDARADAEGIRQdILA 108
                 8999********************************************************************9999999742665 PP

>> DUF997  Protein of unknown function (DUF997)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2     3e-05     0.042      40      70 ..      17      45 ..       1      47 [. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3e-05
      DUF997 40 lPlWfflscillpilfivlvillvkfvFkdi 70
                +P W +  ++++ i fi+l+i+l+kfvF  +
  KIR63260.1 17 IPIWQE--IVVGGIAFILLCIVLMKFVFPRM 45
                577765..68888***************766 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   5.9e-05     0.082       7      67 ..      27      88 ..      23     106 .. 0.84
   2 ?   -0.9   0.0       1.5   2.1e+03      30      49 ..     128     147 ..     117     178 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.9e-05
      DUF948  7 AiAFvvLviflivvll.klkktldeaaatieelekqvdpilkevedllakvnelledvnekl 67
                 iAF++L+i+l+++++ ++++t+++  ++ie+  k++++   e+++ll++ ++ l++ +   
  KIR63260.1 27 GIAFILLCIVLMKFVFpRMEQTFQARVDAIEGGIKRAEAAQAEANQLLEQYRAQLAEARTDA 88
                69*******9998766378999999999999999**************99888666665555 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
      DUF948  30 eaaatieelekqvdpilkev 49 
                 e a+ ++el+ +v+ i  ++
  KIR63260.1 128 ERATIVRELRTEVGTIAVDL 147
                 44555666666666665444 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.3   3.7e-05     0.051     139     210 ..      65     136 ..      42     137 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.7e-05
      FAM184 139 kkhreeveeLlkeqeaqsekllkeqekleekhkaeveklkeev.eelekekkklveeyEeklakqkafyekel 210
                 ++ + e ++Ll++++aq +++ ++++k+++  +a+ e +++++  + ++e  ++++   e+la+  a+  +el
  KIR63260.1  65 AA-QAEANQLLEQYRAQLAEARTDAAKIRDDARADAEGIRQDIlAKAREESDRIIAAGKEQLAAERATIVREL 136
                 33.78999********************************999789999999****99999999999887776 PP

>> Hemerythrin  Hemerythrin HHE cation binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.2   7.2e-05     0.099      58     123 ..      40     113 ..      37     120 .. 0.76
   2 ?    2.6   0.6      0.14     2e+02      20      64 ..      91     137 ..      85     172 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.2e-05
                  HCHHHHH......CCC.HHHHHHHHHHHHHHHHHHHHHHHHCHTCGGSTCHHHHH....HHHHHHHHHHHHHHHH CS
  Hemerythrin  58 llfPlle.....drpggravldvlereHdeirelleelrellkgleepsaaafae....lleeladllreHiakE 123
                   +fP++e     +++++++++++ e+  +e+ +lle+ r+ l+++   +aa  ++    ++e++++++    ++E
   KIR63260.1  40 FVFPRMEqtfqaRVDAIEGGIKRAEAAQAEANQLLEQYRAQLAEAR-TDAAKIRDdaraDAEGIRQDILAKAREE 113
                  57*************************************5555555.2444444445556666666666665555 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.14
                  HHHHHHH.HHHHCCC.HCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH CS
  Hemerythrin  20 lralada.aaevhga.lrklaelldelvdeleaHhaaEEellfPlle 64 
                  +r+ a+a a++ +++ l+k++e  d++ ++ ++ +aaE + +  +l+
   KIR63260.1  91 IRDDARAdAEGIRQDiLAKAREESDRIIAAGKEQLAAERATIVRELR 137
                  54444444566666678888888888888888888888888888877 PP

>> YscO-like  YscO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.4    0.0023       3.1      85     126 ..      52      93 ..      42     102 .. 0.77
   2 ?    7.5   0.7    0.0028       3.9      10      53 ..     104     148 ..     101     171 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   YscO-like  85 elkqeekkvekQkekVkvAerkvEqareelakkrkeveklek 126
                 ++   e  +++ + +  +A++++Eq r +la++r +  k++ 
  KIR63260.1  52 RVDAIEGGIKRAEAAQAEANQLLEQYRAQLAEARTDAAKIRD 93 
                 555556667777777788999999999999999999999875 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0028
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHH CS
   YscO-like  10 ldikkrrveeAEkvvkdkkkaLekEkekl.rkleeerdkvkkhkk 53 
                 +di +++ ee ++++++ k++L++E+++  r+l+ e      +  
  KIR63260.1 104 QDILAKAREESDRIIAAGKEQLAAERATIvRELRTEVGTIAVDLA 148
                 578899********************9862566666655555555 PP

>> KfrA_N  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  10.9   0.00029       0.4      72     113 ..      63     104 ..      53     106 .. 0.92
   2 ?    3.7   1.8      0.07        96      72     102 ..     107     137 ..     104     150 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00029
      KfrA_N  72 wqaaleeaeeelaaaraelqaaraaleaeraeaearveelea 113
                 ++aa++ea++ l++ ra+l++ar ++ + r++a+a +e  ++
  KIR63260.1  63 AEAAQAEANQLLEQYRAQLAEARTDAAKIRDDARADAEGIRQ 104
                 689*********************************998887 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.07
      KfrA_N  72 wqaaleeaeeelaaaraelqaaraaleaera 102
                  ++a ee ++ +aa +++l+a+ra + +e++
  KIR63260.1 107 LAKAREESDRIIAAGKEQLAAERATIVRELR 137
                 5667777777777777777777776666553 PP

>> DUF2937  Protein of unknown function (DUF2937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.52   7.1e+02     133     148 ..      26      41 ..      12      54 .. 0.57
   2 ?   10.5   2.9   0.00026      0.36      32      81 ..      78     127 ..      68     152 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.52
     DUF2937 133 eglafglvgalllall 148
                  g+af l++++l+ ++
  KIR63260.1  26 GGIAFILLCIVLMKFV 41 
                 3444444444444333 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00026
     DUF2937  32 eghldelkrqlagfqatAkrffkgdlealiahyrqsedpvvradaesiqa 81 
                  ++l e+++  a+++++A +  +g +++++a+ r+ +d++++a  e++ a
  KIR63260.1  78 RAQLAEARTDAAKIRDDARADAEGIRQDILAKAREESDRIIAAGKEQLAA 127
                 48999************************************999888765 PP

>> CBP4  CBP4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   5.2     0.036        49       4      38 ..      17      51 ..      14     140 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.036
        CBP4  4 wvrwlkvllaGgaiigtGvllfkyttPtdeeLikr 38
                   w+ +++ G+a i+  ++l+k++ P  e+ +++
  KIR63260.1 17 IPIWQEIVVGGIAFILLCIVLMKFVFPRMEQTFQA 51
                567999*********************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1281  (0.0714485); expected 358.6 (0.02)
Passed bias filter:                      724  (0.0403815); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 1271.93
//
Query:       KIR63261.1  [L=273]
Description: ATP synthase subunit delta [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-33  116.0   0.0    3.9e-29  102.0   0.0    2.0  2  OSCP           ATP synthase delta (OSCP) subunit
  ------ inclusion threshold ------
      0.094   12.9   0.9       0.23   11.6   0.9    1.6  1  Acyl-CoA_dh_C  Acetyl-CoA dehydrogenase C-terminal like


Domain annotation for each model (and alignments):
>> OSCP  ATP synthase delta (OSCP) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   1.8e-05      0.16       8      76 ..      17      85 ..      16      91 .. 0.89
   2 !  102.0   0.0   4.4e-33   3.9e-29       7     172 .]     106     270 ..     105     270 .. 0.98

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.8e-05
        OSCP  8 AlfelAkekgaleeveeelealeavlaedkklaellsnpavsaeekkdlleelfkeklseavknflkll 76
                A++  + e +a+++++++l a++ +l+++++l+++ls+pa + ++++ ll +++ +k+      +l  l
  KIR63261.1 17 AAYARGAEPSAVAATADDLLAVAGLLRREPRLRRALSDPARPGADRAGLLGDMLRGKVGADALDLLTGL 85
                66777788999******************************************9999988777777655 PP

  == domain 2  score: 102.0 bits;  conditional E-value: 4.4e-33
        OSCP   7 kAlfelAkekgaleeveeelealeavlaedkklaellsnpavsaeekkdlleelfkeklseavknflkllaenkRlalLpeiaeefeellaeargivea 105
                 +Al+  A  +g+l eve+el+ + +v+a ++ l+++ls+p  +ae++++l +el+ +k+ +++ +++++ ++      ++  +++  el a++r+++ a
  KIR63261.1 106 EALLASADAAGDLGEVEDELFRFGQVVAGQPALSAALSDPVGPAERRAELARELLAGKARPVTVRLVEVALNGFGGRSFTGSLTRLVELTADRRDRQVA 204
                 79************************************************************************************************* PP

        OSCP 106 eVtsavpLtdeqlekleaalakklgkkkvkleekvdpsliGGvvvkvgdkviDgSvkgkLeklkeqL 172
                 +Vt a+pL+de + +l a+l++++g+ +v+++++vdps++GGv v+vg+ ++Dg+v  +L++ +++L
  KIR63261.1 205 YVTVAAPLSDEDERRLGARLSAMYGR-EVSVKQTVDPSVLGGVSVRVGSDLYDGTVLRRLNETRNAL 270
                 **************************.7*********************************999876 PP

>> Acyl-CoA_dh_C  Acetyl-CoA dehydrogenase C-terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.9   2.6e-05      0.23      23      60 ..       4      41 ..       2      43 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.6e-05
  Acyl-CoA_dh_C 23 aalealqeateallakaakgdpeealaaavpyLelfGd 60
                   a  e++q+ate+l+a+a+ ++p +++a a ++L ++G 
     KIR63261.1  4 ASRESYQAATERLAAYARGAEPSAVAATADDLLAVAGL 41
                   567899*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1954.17
//
Query:       KIR63262.1  [L=546]
Description: ATP synthase F0F1 subunit alpha [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-67  225.3   0.0    9.2e-67  224.8   0.0    1.2  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    9.4e-45  152.0   0.0    1.6e-44  151.3   0.0    1.4  1  ATP-synt_ab_C  ATP synthase alpha/beta chain, C terminal doma
    3.9e-12   46.5   1.8    8.8e-12   45.4   1.8    1.6  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
  ------ inclusion threshold ------
      0.031   13.7   0.0      0.082   12.3   0.0    1.6  2  TniB           Bacterial TniB protein
      0.086   12.4   0.0        0.2   11.2   0.0    1.5  1  AAA_25         AAA domain
       0.11   11.8   0.1       0.25   10.7   0.1    1.6  1  ATPase         KaiC


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.8   0.0   3.1e-70   9.2e-67       1     213 []     152     375 ..     152     375 .. 0.97

  Alignments for each domain:
  == domain 1  score: 224.8 bits;  conditional E-value: 3.1e-70
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHH.HHHHHHSSTS.......S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.......x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvis.qslskqsnsd.......d.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareas 89 
                  Gi+++Da++p+++Gqr+li+g++++Gkt+++ +++++q ++        +  +iyv+iG++++++a++   ++e+++m++t++va+ +++p+  ++++
   KIR63262.1 152 GIKAIDAMTPVGRGQRQLIIGDRKTGKTTVAlDTILNQRDNWrsgdpkkQvRCIYVAIGQKASTIASIKGILEEAGAMEYTTIVASPASDPAGFKYLA 249
                  99****************************999***9964448999998689********************************************** PP

                  HHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSS..EEEEEEEEEEE-GGCSTTSHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  90 iytgitlAEyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdr..tGsvtivaavspaggDfsdpvttatlg 185
                  +ytg +++ ++++ gk+vl+++d+ls++aeA+r +sl+l+++p++++yp+++++ +++l+ER++k++d+   Gs+t +++++++++D+s+ ++t++++
   KIR63262.1 250 PYTGSSIGQHWMYGGKHVLIVFDDLSKQAEAYRAVSLLLRRPPGREAYPGDVFYLHSRLLERCAKLSDElgGGSMTGLPIIETKANDISAFIPTNVIS 347
                  ******************************************************************777779************************** PP

                  HSSEEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 186 itdgfivLdkklaqrkhfPainvlvSvS 213
                  itdg+i+L+++l++++++Painv++SvS
   KIR63262.1 348 ITDGQIFLETDLFNQGVRPAINVGTSVS 375
                  **************************99 PP

>> ATP-synt_ab_C  ATP synthase alpha/beta chain, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.3   0.0   5.2e-48   1.6e-44       1     126 []     382     506 ..     382     506 .. 0.99

  Alignments for each domain:
  == domain 1  score: 151.3 bits;  conditional E-value: 5.2e-48
  ATP-synt_ab_C   1 QtkamkkvagsLklelaqYrEleaFaqFgsdLDeatkkqLerGerlvelLkQkqysplsveeqviilyaatngllddipvekvkefekelleylee 96 
                    Q+k mkkv+gsL+l+laq+rEleaFa F+sdLD+a+++qLerG+rlvelLkQ++ysp++v+eqv++++a+t+g lddipv ++++fe+e+l+yl++
     KIR63262.1 382 QVKPMKKVSGSLRLNLAQFRELEAFAAFASDLDKASRAQLERGSRLVELLKQPNYSPYPVQEQVVSVWAGTEGKLDDIPVGEIRRFEAEFLQYLRH 477
                    99********************************************************************************************** PP

  ATP-synt_ab_C  97 ekkeileeieekkklsdeleeklkeaikef 126
                    +++ +l++i+++ k++de+ ++l++ai +f
     KIR63262.1 478 KHEGTLAAIADN-KWDDEVISSLDQAIASF 506
                    ***********9.8***********99876 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   1.8   2.9e-15   8.8e-12       3      69 .]      29      95 ..      28      95 .. 0.98

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 2.9e-15
                   EEETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N  3 qviGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69
                   +++G+v d ++gi+++ g+   ++ el ef++++lg alnl+   ++v+v+g+   l++G++VkrTG
     KIR63262.1 29 EEVGTVADTGDGIAHVEGLPSTMTNELLEFEDGTLGLALNLDVREIGVVVLGDSAKLEEGQRVKRTG 95
                   589***************************************************************9 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.7e-05     0.082      28      96 ..     158     228 ..     133     237 .. 0.79
   2 ?   -3.1   0.0       1.4   4.3e+03     147     181 ..     387     421 ..     383     425 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.7e-05
        TniB  28 eypkrkrmpnlllvGdsnnGKtmivekFarlhppe..kdedaekvpvlvvqappkpdekrlyaaiLealga 96 
                 ++ +  r +  l++Gd ++GKt+++     +++++  +   +++v+ ++v + +k+++ +  + iLe+ ga
  KIR63262.1 158 AMTPVGRGQRQLIIGDRKTGKTTVALDTILNQRDNwrSGDPKKQVRCIYVAIGQKASTIASIKGILEEAGA 228
                 55667788999************9887775555542134558899************99999999988665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.4
        TniB 147 ksLgnelkipivlvGteealralrtDpqlasRFep 181
                 k+ +  l++ +  + + ea++a+ +D + asR + 
  KIR63262.1 387 KKVSGSLRLNLAQFRELEAFAAFASDLDKASRAQL 421
                 67777888888888899999999999999999775 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.6e-05       0.2      32      79 ..     164     209 ..     154     226 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.6e-05
      AAA_25  32 agelallaGapgtGKttlaldlalavatGkpwlg.pvapeqgkVlyvsa 79 
                 +g   l++G+++tGKtt+ald  l     +   g p   +q++++yv+ 
  KIR63262.1 164 RGQRQLIIGDRKTGKTTVALDTILNQRDNWRS-GdP--KKQVRCIYVAI 209
                 788899***************99987765544.323..58888888876 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   8.3e-05      0.25       2      60 ..     150     213 ..     149     230 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.3e-05
      ATPase   2 ktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgae.......kygepgvfvtveepa 60 
                 +tgI+ +D ++   + +g+  li G+  tGKt++al  ++++         k++ ++++v++ ++a
  KIR63262.1 150 QTGIKAIDAMT--PVGRGQRQLIIGDRKTGKTTVALDTILNQRDnwrsgdpKKQVRCIYVAIGQKA 213
                 8*********8..45588999***************999998541111111234567777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3809.21
//
Query:       KIR63263.1  [L=309]
Description: ATP synthase F0F1 subunit gamma [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-88  295.7   0.0    4.8e-88  295.5   0.0    1.0  1  ATP-synt  ATP synthase
  ------ inclusion threshold ------
       0.57   10.4   4.3        0.4   10.9   0.6    2.1  2  FliG_C    FliG C-terminal domain
        5.8    7.2   7.8        3.5    7.9   3.2    2.3  2  HemY_N    HemY protein N-terminus


Domain annotation for each model (and alignments):
>> ATP-synt  ATP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.5   0.0     8e-92   4.8e-88       2     279 .]       5     302 ..       4     302 .. 0.94

  Alignments for each domain:
  == domain 1  score: 295.5 bits;  conditional E-value: 8e-92
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHCEHHHHTTT..SSG.S...SSEEEEEEE--SSSSSTTHHHHHHHHHHH CS
    ATP-synt   2 lkeikrRiksvkstkkItkAmkmVaaaklrkaqealeaarpyaekleevlealakreeeekhpllke.e.ekkvllivitSDrGLcGgfNsnvikkaek 98 
                 ++ +++Ri+s k +kkItkAm++Va+++++kaq++++a+ pya++++ vl+ala+ +++ +hpll+  e +++++++++t+DrGL+Gg+ sn ik+a++
  KIR63263.1   5 VRVLRQRIRSAKGMKKITKAMELVATSRIAKAQARVQASLPYAQAITGVLTALAS-NARIDHPLLTPrEqVRRAGVLLVTADRGLAGGYSSNAIKTAQS 102
                 6789*************************************************66.6678999976655599*************************99 PP

                 HHHHHHTTT.ETEEEEESHHHHHHH.HHSS.EHHTTCE-TSS--HHHHHHHHHHHHSHHHTT..............SBSEEEEEEEEECCTSEEEEEEE CS
    ATP-synt  99 lieelkkeg.evklvvvGkkgreyf.krkvevqleftgvskkptfeeaseiaeeildlyeeg..............eideveivynkfksaisqeptve 181
                 li++l++eg e  l+v+G+kg  ++ +r+ ++++++tg+s++ptf++a+e+ e++++++++g               ide++ivy++f+s ++q+p+++
  KIR63263.1 103 LIARLRAEGkEPVLYVIGRKGVGFYrFRDWPIEANWTGFSEQPTFADAREVGETLIKAFTAGaddtdgsagadgvlGIDELHIVYTEFHSLMTQTPVAK 201
                 997777888789***********************************************8888888889999999999********************* PP

                 EESST...HC...S..SSTSEESS.HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
    ATP-synt 182 kllplekeee...kkekseyefepdeeevleellpeylasliyrallesaasEqaaRmtaMdnAtknakelidkltleyNraRQaaITqELieIvsGae 277
                  + p++ e+    +   ++yefep++e++l++llp+y++++iy allesaasE a+R+ aM++At+na+e+i+k+t+e+N aRQa ITqE++eIv+Ga+
  KIR63263.1 202 VIGPMQVEDRpksEGLLPAYEFEPEAEALLDALLPKYINTRIYAALLESAASESASRRRAMKSATDNAEEMIEKYTREMNSARQAGITQEISEIVGGAN 300
                 ****8777777778888999******************************************************************************* PP

                 T- CS
    ATP-synt 278 AL 279
                 AL
  KIR63263.1 301 AL 302
                 *8 PP

>> FliG_C  FliG C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.13   7.9e+02      66      93 ..      13      40 ..      11      45 .. 0.86
   2 ?   10.9   0.6   6.7e-05       0.4      50     104 ..     252     306 ..     232     307 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.13
                HHHHHHHHHHHHC-S--HHHHHHHHHHH CS
      FliG_C 66 raaemlreelealgpvrlsdveeaqkei 93
                r a+ +++  +a++ v  s++ +aq ++
  KIR63263.1 13 RSAKGMKKITKAMELVATSRIAKAQARV 40
                678888999999999*********9987 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 6.7e-05
                 TS-HHHHHHHHTTS-HHHHHHHHHHHHHC-S--HHHHHHHHHHHHHHHHHHHCTT CS
      FliG_C  50 gaseelrekilsnmSkraaemlreelealgpvrlsdveeaqkeivaiirrleeeG 104
                 +++++ r++ +++   +a em+++   +++  r++ + +  +eiv  +  l+++G
  KIR63263.1 252 ASESASRRRAMKSATDNAEEMIEKYTREMNSARQAGITQEISEIVGGANALAASG 306
                 33455669999*****************************************999 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.2   0.00058       3.5      45     104 ..       3      60 ..       1      63 [. 0.86
   2 ?    1.0   0.1     0.079   4.7e+02      37      66 ..     244     269 ..     230     293 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00058
      HemY_N  45 arvrrwrrrrrerkarealseGlialaeGdfarAekaaakaaklseapllayllaAqAaq 104
                 a+vr  r+r r  k+ +++++++  +a  + a+A+   ++++ +++a  ++ +l+A A++
  KIR63263.1   3 AQVRVLRQRIRSAKGMKKITKAMELVATSRIAKAQARVQASLPYAQA--ITGVLTALASN 60 
                 689999*****************************999999988877..66677666665 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.079
      HemY_N  37 lrlllrlparvrrwrrrrrerkarealseG 66 
                  ++ll++    ++  +++r+r+++ a+ ++
  KIR63263.1 244 YAALLES----AASESASRRRAMKSATDNA 269
                 4444443....2222233444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       970  (0.0541023); expected 358.6 (0.02)
Passed bias filter:                      701  (0.0390987); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2241.87
//
Query:       KIR63264.1  [L=478]
Description: ATP F0F1 synthase subunit beta [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-62  210.6   0.0    2.8e-62  210.1   0.0    1.2  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    1.6e-22   79.8   0.1    4.6e-22   78.3   0.1    1.9  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
     0.0012   18.7   0.4     0.0062   16.4   0.4    2.1  1  T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
      0.003   17.5   0.0     0.0057   16.6   0.0    1.4  1  RsgA_GTPase    RsgA GTPase
      0.004   16.5   1.3     0.0084   15.5   1.3    1.5  1  ATPase         KaiC
     0.0041   17.5   0.2      0.023   15.1   0.0    2.2  2  AAA            ATPase family associated with various cellular
     0.0057   16.6   0.0      0.011   15.7   0.0    1.4  1  ATPase_2       ATPase domain predominantly from Archaea
  ------ inclusion threshold ------
      0.047   14.0   0.1       0.16   12.3   0.0    1.9  2  AAA_19         AAA domain
      0.097   12.7   0.1       0.17   11.9   0.1    1.4  1  LRV_FeS        LRV protein FeS4 cluster
       0.11   11.7   0.7        0.4    9.8   0.6    1.9  2  NB-ARC         NB-ARC domain
       0.19   12.2   0.0       0.78   10.2   0.0    2.0  2  RNA_helicase   RNA helicase


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.1   0.0   1.7e-65   2.8e-62       1     213 []     144     357 ..     144     357 .. 0.97

  Alignments for each domain:
  == domain 1  score: 210.1 bits;  conditional E-value: 1.7e-65
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS.S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsd.d.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitl 96 
                  Gi+v+D+l p+v+G++++++g++gvGktv++q+++     +   +++++g+Ger++e ++++ e++e++++++t lv+ +++ep+ +r+++++ ++t+
   KIR63264.1 144 GIKVIDLLAPYVKGGKIGLFGGAGVGKTVLIQEMITRVARNfGgTSVFAGVGERTREGNDLIAEMTESGVIDKTALVYGQMDEPPGTRLRVALSALTM 241
                  99*****************************7777776555546****************************************************** PP

                  HHHHHH.TTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHHHHHHHSSEEEEB CS
                  xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  97 AEyfrd.qgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvttatlgitdgfivL 193
                  AEyfrd ++++vll++d+++r+++A  e+s++lg+mp++ gy+++l+ ++ +l+ER++++  r  ++t+++a++++++D++dp + +t++++d+++ L
   KIR63264.1 242 AEYFRDvKKQEVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGELQERITSV--RGQAITSLQAIYVPADDYTDPAPATTFAHLDATTNL 337
                  ******99****************************************************..889********************************* PP

                  -HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 194 dkklaqrkhfPainvlvSvS 213
                  ++++ +++++Pa+++l+S S
   KIR63264.1 338 ERSISDKGIYPAVDPLASSS 357
                  ******************98 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.1   2.8e-25   4.6e-22       1      69 []      14      85 ..      14      85 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 2.8e-25
                   EEEEETTEEEEESSTSCETCTTEEEEECCET....CSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N  1 ivqviGpvvdvefgigrlpgiynalevelve....fgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69
                   +v+viGpvvd+ef+++++p++ nal+v+ v     ++tl+l+va++lg++ +r+i m +tdGl+rG+eV++TG
     KIR63264.1 14 VVRVIGPVVDAEFPRDAMPALFNALNVD-VSlsggEKTLTLEVAQHLGDNLIRAISMQPTDGLVRGAEVRDTG 85
                   79**************************.66799999***********************************9 PP

>> T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.4   3.8e-06    0.0062       2      58 ..     366     421 ..     365     428 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.8e-06
  T3SS_ATPase_C   2 spehlqaarklrellatyqenedLiniGaYkkGsdpelDeAiakrpainafLkQgvd 58 
                     +eh++ a++++++l++y++ +d+i i   ++ s ++    +++  +i++fL Q++ 
     KIR63264.1 366 GEEHFAVATEVKRILQKYKDLQDIIAILGIEELSEEDK-ITVQRARRIERFLSQNTY 421
                    68************************988887665432.467888888888888875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.5e-06    0.0057      88     157 ..     146     215 ..     115     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.5e-06
                  TTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEES CS
  RsgA_GTPase  88 egleelkellkdktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglliD 157
                  + ++ l++++k+  + l G  GvGK+ Li +++ +   + g +s   g G  T     l++  +++ +iD
   KIR63264.1 146 KVIDLLAPYVKGGKIGLFGGAGVGKTVLIQEMITRVARNFGGTSVFAGVGERTREGNDLIAEMTESGVID 215
                  567889999999999999***********************************99999998777887877 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.3   5.1e-06    0.0084       2      72 ..     142     213 ..     141     224 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.1e-06
      ATPase   2 ktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepa...edlrenakslGw 72 
                 +tgI+ +D +    + +g  + + G++G GKt++ ++ + + a+++g   vf  v e+    +dl+ ++++ G+
  KIR63264.1 142 ETGIKVIDLLA--PYVKGGKIGLFGGAGVGKTVLIQEMITRVARNFGGTSVFAGVGERTregNDLIAEMTESGV 213
                 79999999996..899999**************************************99888999999998885 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.4e-05     0.023       3      74 ..     162     267 ..     160     281 .. 0.77
   2 ?   -1.7   0.1       2.2   3.6e+03      40      73 ..     370     401 ..     354     420 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.4e-05
                 EESSTTSSHHHHHHHHHHHHTHE....................EEEEETTTCSSS................STTHHHHHHHHHHHHHHHTSTSEEEEEE CS
         AAA   3 lyGppGtGKTllakavakelgve....................fleisgsellsk................yvgesekkirelfkeakekakpsilfiD 65 
                 l+G  G+GKT l++ +++ + ++                    + e+  s +++k                 v  s+  ++e+f+++k+++  + lfiD
  KIR63264.1 162 LFGGAGVGKTVLIQEMITRVARNfggtsvfagvgertregndlIAEMTESGVIDKtalvygqmdeppgtrlRVALSALTMAEYFRDVKKQE--VLLFID 258
                 89***************9985553333444444455555555555666666665599999999*****9999***************9998..****** PP

                 TGGGHHHHH CS
         AAA  66 Eidalaksr 74 
                 +i +++++ 
  KIR63264.1 259 NIFRFTQAG 267
                 **9988777 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.2
                 THHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHH CS
         AAA  40 gesekkirelfkeakekakpsilfiDEidalaks 73 
                  + + +++ ++++ k  +   i+ i  i++l ++
  KIR63264.1 370 FAVATEVKRILQKYKDLQ--DIIAILGIEELSEE 401
                 445566777777777776..55555555555443 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.8e-06     0.011      25     142 ..     162     274 ..     147     289 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.8e-06
    ATPase_2  25 iYGpegsGKtaLlkeiienl.edkdkyviyyialreesiskldefieeeeekkklekal.....giavpkaeleeilkeksklvfkaielllekikkkg 117
                 ++G  g+GKt L++e+i++  ++ +   ++  a  +e++ + ++ i+e  e+  ++k++     +++ p ++l      + +l    ++++++++kk+ 
  KIR63264.1 162 LFGGAGVGKTVLIQEMITRVaRNFGGTSVF--AGVGERTREGNDLIAEMTESGVIDKTAlvygqMDEPPGTRL------RVALSALTMAEYFRDVKKQ- 251
                 6999***************95555555555..55555666667778888888888888755443333333333......4566666777777777776. PP

    ATPase_2 118 kkiiiiiDelqklidlglngaellv 142
                  ++ ++iD +++  + g++    l+
  KIR63264.1 252 -EVLLFIDNIFRFTQAGSE-VSTLL 274
                 .89*********9987766.44444 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.8e-05      0.16       8      37 ..     155     184 ..     150     269 .. 0.89
   2 ?   -1.6   0.0       1.9   3.1e+03      58      78 ..     294     341 ..     288     412 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.8e-05
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallvel 37 
                 +k + + + +G+G GKT +++++++ + ++
  KIR63264.1 155 VKGGKIGLFGGAGVGKTVLIQEMITRVARN 184
                 67778899**************99988776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.9
      AAA_19  58 lrerlaalgae....................atTiHrlal.......l 78 
                 l+er++++ ++                    atT+ +l         +
  KIR63264.1 294 LQERITSVRGQaitslqaiyvpaddytdpapATTFAHLDAttnlersI 341
                 555555555554444444444444555555566666653334444440 PP

>> LRV_FeS  LRV protein FeS4 cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00011      0.17      33      52 ..     405     424 ..     401     425 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
     LRV_FeS  33 adryarridRFfrwnpeLAd 52 
                  +++arri+RF+++n   A+
  KIR63264.1 405 TVQRARRIERFLSQNTYAAE 424
                 6789***********87775 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3   2.1e+03     154     191 ..     111     148 ..      99     151 .. 0.79
   2 ?    9.8   0.6   0.00025       0.4      23      49 ..     160     183 ..     142     196 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
                 EEESS--HHHHHHHHHHCCTS-GGCHH..CHHHHHHHH CS
      NB-ARC 154 ievelLekdeawellenkvfekkleekesleevakeiv 191
                  e e L++d+ w +  +    ++le k+++ e + +++
  KIR63264.1 111 TEGETLSPDDHWGIHRKAPAFADLEPKTEMLETGIKVI 148
                 56789999****99999999999999988877777776 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00025
                 EEEEESTTSSHHHHHHHHCCSHCCCCC CS
      NB-ARC  23 valvGmgGvGKttlakqilnksdeveg 49 
                 ++l G +GvGKt+l+++++     v +
  KIR63264.1 160 IGLFGGAGVGKTVLIQEMITR---VAR 183
                 899*************99876...555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00048      0.78       3      26 ..     162     185 ..     160     216 .. 0.84
   2 ?   -1.7   0.0       2.4   3.8e+03      41      84 ..     242     285 ..     235     293 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00048
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl 26 
                   l+G +g+GK++l++e+++++++++
    KIR63264.1 162 LFGGAGVGKTVLIQEMITRVARNF 185
                   89******************9887 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.4
  RNA_helicase  41 ddfwdgYtgqevvvidDfgqvkdeenpsdlaelirlvsstpypl 84 
                    +++   ++qev+++ D   + +++  +  + l r+ s + y++
    KIR63264.1 242 AEYFRDVKKQEVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQP 285
                   68888999999988877444333323334445555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3362.77
//
Query:       KIR63265.1  [L=381]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-34  117.1   0.0      1e-33  116.7   0.0    1.1  1  LytR_cpsA_psr  Cell envelope-related transcriptional attenuat


Domain annotation for each model (and alignments):
>> LytR_cpsA_psr  Cell envelope-related transcriptional attenuator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.0   5.6e-38     1e-33       2     150 ..      98     282 ..      97     284 .. 0.92

  Alignments for each domain:
  == domain 1  score: 116.7 bits;  conditional E-value: 5.6e-38
                    -SEEEEEEEEGGGTEEEEEEE-TTBEE-----...--...---EES-TTTTT............-HHHHHHHHHHHHTS-.--EEEEE-HHHHHHH CS
  LytR_cpsA_psr   2 sDtimlvtvnakkkkvklvSipRDtlveipggeskat...gekkinsayalg............gaellvktvekllgin.idyYvevdfegfakl 81 
                    +D+im+++++a+ +++ l+S+pRD +veip  +++ +   g++k+n+a ++g            g ell ktv++++gi+  d  + ++f+gf+k+
     KIR63265.1  98 ADSIMVLHIPAELDRAYLFSLPRDLRVEIPRFSKA-DfngGTDKLNAAMSYGsrvpgqnpdaarGFELLAKTVQQVTGIDrFDAGAIINFTGFQKI 192
                    7*****************************76333.235689************************************9648999*********** PP

                    HHHHT---B-------------...................-------B---HHHHHH-----------....--SHHHHHHHHHHHHHHTT CS
  LytR_cpsA_psr  82 vdalgGvevdvkedvkdkeese...................lklkaGeqkldGeqalayvRfRkddeeg....DlgRikrQqqvleallkkl 150
                    vda+gGv+ +++++v+++ + e                   +  k+G+q+l G qal yvR+R+ ++ g    D+gR+++Qqq+++a+++++
     KIR63265.1 193 VDAMGGVDMYIEREVRSE-HREpsgvhrkgnpygegyigpqAVYKKGNQHLSGWQALDYVRQRYPKN-GvpdaDYGRQRHQQQFIKAMVDQA 282
                    ***************986.55578899999***********9**********************998.55888***************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2513.98
//
Query:       KIR63266.1  [L=94]
Description: ATP synthase F0F1 subunit epsilon [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-27   95.6   0.2    1.3e-27   95.5   0.2    1.0  1  ATP-synt_DE_N  ATP synthase, Delta/Epsilon chain, beta-sandwi


Domain annotation for each model (and alignments):
>> ATP-synt_DE_N  ATP synthase, Delta/Epsilon chain, beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.2   7.4e-32   1.3e-27       1      80 []       5      85 ..       5      85 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 7.4e-32
                   EEEEEEESSSEEEEEEEEEEEEEESSSEEEE-TT--SEEEEEE.SEEEEEEEGGGEEEEEEESSEEEEEETTEEEEEESSS CS
  ATP-synt_DE_N  1 lkleivtpervvfsgeveevvaptteGelgilpgHaplitaLk.pgelriktedgeeesiavsgGflevqdnkvtiladta 80
                   l++e+v  e++v+sge+e+vva+tteGelg+lpgHapl+ +L+ pg +rik  +ge+ s+ v gGfl+v+ + vt+la++a
     KIR63266.1  5 LHVELVAVEEKVWSGEAEMVVARTTEGELGVLPGHAPLLGQLAePGQVRIKLPGGEQVSYEVAGGFLSVSREGVTVLAESA 85
                   79****************************************967**********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 735.01
//
Query:       KIR63267.1  [L=151]
Description: hypothetical protein TK50_20675 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-42  142.9   3.0    5.8e-42  142.7   3.0    1.0  1  DUF2550   Protein of unknown function (DUF2550)


Domain annotation for each model (and alignments):
>> DUF2550  Protein of unknown function (DUF2550)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.7   3.0   3.2e-46   5.8e-42       1     127 []      11     137 ..      11     137 .. 0.99

  Alignments for each domain:
  == domain 1  score: 142.7 bits;  conditional E-value: 3.2e-46
     DUF2550   1 lvlvvllvlallarrrlllrrrGafevalRelpaeggrgWrlGvarYsgeelewyrllslrprPsrvlsRrglevegrrepegeeaaalaedlvvvelr 99 
                 +++v++++++l++rr l++r++G +++++R+++  +grgW+ G++r++g+el+wyr++s+++rP+rvlsR++l ve+rr peg+e+  +++d+v+++++
  KIR63267.1  11 VAAVLVALFVLFLRRALVTRSGGIIRLSVRVTTVLDGRGWSPGFGRFAGDELRWYRMFSFALRPKRVLSRKTLVVERRRLPEGQERLSMPADWVILRCA 109
                 57899********************************************************************************************** PP

     DUF2550 100 eegeelelamdeealtgllsWlEsaPpg 127
                 +++  +e+am+++++tg+lsWlE+aPpg
  KIR63267.1 110 SRHVPVEIAMARSTVTGFLSWLEAAPPG 137
                 **************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1140.42
//
Query:       KIR63268.1  [L=142]
Description: glyoxalase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-13   50.8   0.1    2.6e-13   50.2   0.1    1.3  1  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
     0.0049   17.1   0.0      0.074   13.2   0.0    2.0  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge


Domain annotation for each model (and alignments):
>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.1   2.9e-17   2.6e-13       1     109 []      16     125 ..      16     125 .. 0.88

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 2.9e-17
                   EEEEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETTEEEEEEEESSTT-THHHTS-EEEEEEEEE...S-HHHHHHHHCTTTEEEE CS
  Glyoxalase_4   1 dQigivVeDleaavarfsallGvgpwqryrdepqevdlafallgsgsvqieLieplegpeflaehgeglhhlaywv...ddldaavarleeqGfevv 94 
                   ++++++V++l +av+ +++ll+   wq+++d++++ ++   +lg +++ +e  +p  +   +++  +gl+hla++     d+d+ va++ ++G++++
    KIR63268.1  16 HHVEVWVPELAEAVRCWGWLLNELGWQPFQDWSAGRSW---RLGPTYLVVE-ESPAMTGRNHDRLAPGLNHLAFHAgqpADVDRLVAAAPAHGWSLL 108
                   8*******************************999965...5666567899.9999999****************84445***************98 PP

                   ..EEEE-GGGTT-EEEE CS
  Glyoxalase_4  95 ..qkgvragaagrrfay 109
                     +++++ag+a++++ay
    KIR63268.1 109 faDRHPHAGGADTYAAY 125
                   44667888888899888 PP

>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   8.3e-06     0.074       2     128 .]      15     136 ..      14     136 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.3e-06
                 EEEEEEEESHHHHHHHHHHHH...HTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSC......TSEEEEEEEEEHCHHHHHH CS
  Glyoxalase   2 idhvallvgdleksldFYtkv...LGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkiee......tvhhvafialdvedvgkal 91 
                 ++hv + v++l+++++++      LG++ + ++          ++  + g + + +      s+a+++     +      + +h+af+a    dv++ +
  KIR63268.1  15 LHHVEVWVPELAEAVRCWGWLlneLGWQPFQDWS--------AGRSWRLGPTYLVVEE----SPAMTGR----NhdrlapGLNHLAFHAGQPADVDRLV 97 
                 6777777777777777665554446666666666........2222222222222221....2222222....11234446889*************** PP

                 HHHHHTTGEEEEEEECHHCTEEEEE...EEEETTSEEEEE CS
  Glyoxalase  92 drlkeagvkvvaepgrhyfgalysf...yfrDpdGillei 128
                   + ++g +  +  +rh+  ++ +    y +   G+++e+
  KIR63268.1  98 AAAPAHGWSLLFA-DRHPHAGGADTyaaYLTNTQGYEVEL 136
                 *******998887.77776655444444999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1060.04
//
Query:       KIR63269.1  [L=190]
Description: Cob(I)yrinic acid a,c-diamide adenosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-56  191.1   0.0    1.6e-56  190.9   0.0    1.0  1  Cob_adeno_trans  Cobalamin adenosyltransferase


Domain annotation for each model (and alignments):
>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.9   0.0   9.1e-61   1.6e-56       1     163 [.       8     175 ..       8     176 .. 0.96

  Alignments for each domain:
  == domain 1  score: 190.9 bits;  conditional E-value: 9.1e-61
                      XXXXXXXXXXXXXXXX.XXXTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHT....-BTCCG-S--HHHHHHH CS
  Cob_adeno_trans   1 iyTrtGDkGtTslvggervsKddprveayGtvDelnsaiglarallaeeeeelkeaLeeiqneLfdlgaelatp...ekkkekkkiteeeveel 91 
                      iyT+ GD+G+T+l ++e+v+K+dpr+ ay++vDe+n+aig+a+al  + ++el+++L +iqn++fd+ga+l+tp   + k+ + ++tee ve+l
       KIR63269.1   8 IYTKAGDAGMTRLSNNEQVPKTDPRIAAYADVDECNAAIGVALAL-GQLDDELRAVLGSIQNDMFDVGADLSTPvepDPKYPPLRVTEEYVERL 100
                      9******************************************55.67899************************999999************* PP

                      HHHHHHHHHHS--EESEEES-SSHHHHHHHHHHHHHHHHHHHHHHHHHHS....HHHHHHHHHHHHHHHHHHHHH CS
  Cob_adeno_trans  92 ekeideleaelpplksfilpggspaaaalhvaRtvcRraERavvelaeee...veeevlkylNRLSDlLfvlarv 163
                      e ++de++a+l +l+sfilpgg+  aa lhvaRt++RraERa+++l +++   +++   kylNRLSDlLf+l+r+
       KIR63269.1 101 EGWCDEFNARLGKLDSFILPGGTAGAALLHVARTIARRAERAAWTLVAHDpdrTSTLPAKYLNRLSDLLFILSRT 175
                      **********************************************9988876678889**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1443.26
//
Query:       KIR63270.1  [L=478]
Description: UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-84  284.5   0.2    5.4e-84  282.3   0.2    1.8  1  EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvin


Domain annotation for each model (and alignments):
>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.3   0.2     3e-88   5.4e-84       3     417 .]      44     458 ..      42     458 .. 0.91

  Alignments for each domain:
  == domain 1  score: 282.3 bits;  conditional E-value: 3e-88
                    CSS--EEEEE--B-HHHHHHHHHHHGGGBSS.EEEES---SHHHHHHHHHHHHTT.EEEEEECT..............SEEEEEGTT..--EE-HH CS
  EPSP_synthase   3 kgkrlegevkvpGsksisnralllAaLaege.stitnlLdseDvrsmlealreLgaeiikldee..............kevviveglggsfeapee 83 
                    + +rl g+v v G +++s+++l++AaL++   s itn++++ D+  m e+lr+Lg  +  + +e               +v+i+ +     ea+++
     KIR63270.1  44 GDARLAGTVHVVG-AKNSALKLMAAALLAPGrSVITNVPRITDIAIMGEVLRRLGCGVRFDADEpvdpmvarggvarsRSVTIDVPERPGAEADYD 138
                    6789*********.************988666***********************87766544422222222111111456666666666777799 PP

                    HHTT-GGGGGGHHHHHHHHSEESSEEEEE-SBTTCGS--HHHHHHHHHTT-EEEEETTEEEEEESEETSS-BEEEEETSSTTHHHHHHHHHHHTTS CS
  EPSP_synthase  84 lvldlgnsgtalrlLtallalasgevvLtGdesirkRPidrlldaLrqlGaeieveegenkaplkvkglklkgveikaevsSqqvtsllllaalla 179
                    lv++l++s+++l++L+a+ + +  +v+ +G+++i++R +d+++ +L+ +Ga+i +e+g + a +      l g++i ++++S+++t++l +aa+la
     KIR63270.1 139 LVRRLRASICVLGPLLARRGYV--RVAHPGGDAIGSRGLDMHIAGLTRMGADISGEHGFVIAAAP---DGLHGADIVLDFPSVGATENLVMAAVLA 229
                    ********************98..9*********************************7777776...99************************** PP

                    BSEEEEES-TTHHHHHHHHHHHHHTT-EEEETTSSEEEEEE--SSB--EEEE--B-HHHHHHHHHHHHHTT-EEEEES--GGGGHHH..HHHHHHH CS
  EPSP_synthase 180 egtteleelasepsiddtlkmlkkfgikietsgteesitvkGkeklpgteyvvegDassAayflvaAaitggevtvenvginslqGdiealdeile 275
                    +gtt + ++a+ep+i+d ++ml ++g+ ie++gt++ + ++G+++l  +++  +gD++ A++++ aAa+t+g+vtv+++++  l+    ++ ++l 
     KIR63270.1 230 QGTTVIDNAAREPEIVDICSMLIRMGARIEGEGTST-LHIDGVPELRPVRHATVGDRIVAGTWAFAAAMTRGDVTVTGIDPGFLE----VALDKLV 320
                    *******************************99998.*********999********************************9999....7777*** PP

                    HTTEEEEEESTSEEEEEETTS--BEEEEEBGSTTSBHGGGHHHHHHHHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEETTEEEEEEEEE.EB CS
  EPSP_synthase 276 kmgaeitqeedasivvgpsglklkdvdietlpdeaptlavlaafaegttviegiaelrvketdrlaamateLrklGaeveeeedgliiipaekqlk 371
                     +g  +++   + ++v++   ++ +vd+ tlp++++++++l + + +  v +g++ ++++++d ++++a+e+ +lGa+++++ +    + ++ +l+
     KIR63270.1 321 CAGGLVETRG-DAFRVRM-ADRPTSVDVVTLPYPGFATDLLPMAIGLAAVSDGASLITENIFDGRFMFANEMMRLGADIKTDGHHAV-VRGRDRLS 413
                    ******9999.7888888.79*************************************************************98876.555557** PP

                    -EEEE-TTSTTTTHHHHHHHHHSBSEEEEETTHHHHHHSSSHHHHH CS
  EPSP_synthase 372 gaevesydDhRiamalalaglvaegeveiddiectdksfpefeekL 417
                    ga v+++ D+R+++ l++agl a+g +e+ +++++d+++p+f+ +L
     KIR63270.1 414 GAPVRAT-DIRAGAGLIIAGLCADGVTEVSHVHHVDRGYPDFVADL 458
                    *******.**********************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 3041.57
//
Query:       KIR63271.1  [L=282]
Description: 3-hydroxybutyryl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-69  230.9   0.4    1.5e-68  230.3   0.4    1.3  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
    1.1e-30  106.1   0.1    1.8e-29  102.2   0.0    2.4  2  3HCDH           3-hydroxyacyl-CoA dehydrogenase, C-terminal d
    0.00011   22.4   2.7    0.00012   22.3   0.6    2.1  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
     0.0009   18.9   0.7     0.0097   15.5   0.3    2.1  2  DAO             FAD dependent oxidoreductase
     0.0069   15.6   0.2       0.01   15.1   0.2    1.4  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.024   15.1   0.7      0.038   14.5   0.4    1.6  1  XdhC_C          XdhC Rossmann domain
      0.036   13.6   0.7      0.053   13.1   0.1    1.7  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
      0.042   14.1   2.4      0.046   14.0   0.7    1.9  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      0.048   13.6   2.2       0.16   12.0   2.2    2.1  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
      0.062   13.9   6.5       0.05   14.2   2.7    2.7  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
      0.099   13.2   0.9       0.37   11.4   0.2    2.3  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
       0.15   11.6   2.7        2.6    7.6   2.7    2.3  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
       0.95    8.8   4.0        9.7    5.5   0.1    2.2  2  ThiF            ThiF family
        9.6    5.4   9.3         26    4.0   9.3    2.0  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.3   0.4   1.1e-71   1.5e-68       2     178 ..       5     182 ..       4     184 .. 0.99

  Alignments for each domain:
  == domain 1  score: 230.3 bits;  conditional E-value: 1.1e-71
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlviEavvEnlelKrkvfael 100
                 +av+GaG+mG+gia+v+a+ag +V+l d +++a  ++l+ i+kslek++ekgk++  ev+aal ri++ttdle+++dad+v+Eav+E+le+K++vf++l
  KIR63271.1   5 LAVVGAGLMGSGIAQVAAQAGWQVTLRDLDDAATGRGLAGIRKSLEKFAEKGKIEPGEVDAALGRITPTTDLEAVADADIVVEAVFERLEIKQEVFRAL 103
                 69************************************************************************************************* PP

                 HCCS-TTSEEEE--SSS-HHHHCCCSSSGGGEEEEEE-SSTTT--EEEEEE-TT--HHHHHHHHHHHHHTT-EEEEE.C CS
     3HCDH_N 101 ekiakpdailasnTSslsiselaealkrperviglHFfnPpplmkLvEvvrgekTseetvatvvelakkigktpvvv.k 178
                 +k++++da+la+nTS+++++++a++++rpe v+g+HFf+P+p+mkL+E+vrg kTs+et+at++++a++igkt+vvv +
  KIR63271.1 104 DKLCRADAVLATNTSAIPVTQIAAVTERPESVVGTHFFSPVPMMKLCELVRGYKTSDETLATARAFAEEIGKTVVVVnR 182
                 *****************************************************************************55 PP

>> 3HCDH  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.37   4.8e+02      17      33 ..      51      67 ..      17      73 .. 0.86
   2 !  102.2   0.0   1.4e-32   1.8e-29       1      97 []     186     282 .]     186     282 .] 0.99

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.37
                HHHHTTSS-HHHHHHHH CS
       3HCDH 17 rlveegvaspediDaam 33
                + +e+g ++p ++Daa+
  KIR63271.1 51 KFAEKGKIEPGEVDAAL 67
                56899999999999997 PP

  == domain 2  score: 102.2 bits;  conditional E-value: 1.4e-32
                 TTTHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHTTTHGGHH-HHHHHHHHTT--BGGGTBSSSBC CS
       3HCDH   1 GFvvnRvlapllneavrlveegvaspediDaamrlglGlpmGpfelldlvgldvakkilevlaeelgerayapsplleklveagrlgrktgkgfyky 97 
                 GFv++R++a+l+ eav+lve gv+s+ed+D+a++lg+G+ mGp++++dl+g+dv  ++++ ++  + ++++ p++ll+++v ag+lgrktgkgfy+y
  KIR63271.1 186 GFVTTRLIAALVVEAVKLVESGVVSAEDLDTACKLGFGHAMGPLATTDLTGVDVLMHASKNIYTDTADEKFFPPELLQRMVTAGDLGRKTGKGFYTY 282
                 9**********************************************************************************************98 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.6   9.4e-08   0.00012       2      98 ..       5     124 ..       4     136 .. 0.79
   2 ?   -1.9   0.1       2.5   3.2e+03      22      48 ..     174     183 ..     156     216 .. 0.50

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 9.4e-08
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT........................EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg........................akaaesieelvasldvvitmvkagkavdevi 73 
                    ++++G G MGs +a+  ++ag++v++ +++ +++ + +a                          +++++++ e+va++d+v+  v +  ++++ +
     KIR63271.1   5 LAVVGAGLMGSGIAQVAAQAGWQVTLRDLDDAATGRGLAGIrkslekfaekgkiepgevdaalgrITPTTDL-EAVADADIVVEAVFERLEIKQEV 99 
                    79***************************9966555554433445555555599999*99999766555555.588899*****999999999999 PP

                    HSHCCC--TT-EEEE-S---HHHHH CS
  NAD_binding_2  74 egllealkkgdilidgstsspedtr 98 
                    ++ l++l + d ++ + ts++  t+
     KIR63271.1 100 FRALDKLCRADAVLATNTSAIPVTQ 124
                    9988888888888888887777665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.5
                    T-EEEEE-SSHHHHHHHHHTTEEE-SS CS
  NAD_binding_2  22 gykvavynrtkekveelvaegakaaes 48 
                    g +v+v+nr                 +
     KIR63271.1 174 GKTVVVVNR-----------------D 183
                    223333332.................2 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   7.6e-06    0.0097       2      53 ..       5      54 ..       4     130 .. 0.73
   2 ?    2.1   0.0      0.09   1.1e+02      12      46 ..     163     195 ..     163     280 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.6e-06
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHS CS
         DAO  2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpe 53
                ++++G+G +G+++A  +a++g  Vtl + + +   +a+gr  + ++ +l++++e
  KIR63271.1  5 LAVVGAGLMGSGIAQVAAQAGwqVTLRDLD-D---AATGRGLAGIRKSLEKFAE 54
                69************************9998.5...4588888888887755554 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.09
                 HHHHHHHHHT.T..EEEEESSSSTTSSGGGSSEEEEES CS
         DAO  12 lstAyeLarr.g..VtllekgdiagsgaSgrnsgllhs 46 
                 l+tA++ a++ g  V+++ ++ iag  ++   +    +
  KIR63271.1 163 LATARAFAEEiGktVVVVNRD-IAGFVTTRLIA----A 195
                 79*****99888899999999.99955554433....3 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2     8e-06      0.01     144     195 ..       4      55 ..       1     116 [. 0.74

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8e-06
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaaleealek 195
                  r++vvG+G+ G+ +A+++a++g +vtl +  d    r+l   +++ le+  ek
   KIR63271.1   4 RLAVVGAGLMGSGIAQVAAQAGWQVTLRDLDDAATgRGL-AGIRKSLEKFAEK 55 
                  788999999999999999999999987666555554333.3455555554444 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.4     3e-05     0.038       1      35 [.       5      48 ..       5     132 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3e-05
                EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG.........- CS
      XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpreefa.........t 35
                l+++Gag ++  +a++aa++g++vt+ d +++++         +
  KIR63271.1  5 LAVVGAGLMGSGIAQVAAQAGWQVTLRDLDDAATgrglagirkS 48
                789***********************999886444555555542 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   4.1e-05     0.053       2      84 ..       4      89 ..       3     129 .. 0.85
   2 ?   -2.7   0.1       2.9   3.7e+03     105     121 ..     167     183 ..     162     208 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.1e-05
                    EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHH....HHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-- CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevigvDideek....vdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaV 84
                    +++v+G+G +G   a v a++g +v++ D d+++     + ++++  ++ e+g  e  +  ++ gr++ ttd+e  v++ad+++ aV
      KIR63271.1  4 RLAVVGAGLMGSGIAQVAAQAGWQVTLRDLDDAAtgrgLAGIRKSLEKFAEKGKIEPGEVDAALGRITPTTDLEA-VADADIVVEAV 89
                    689****************************98733335678888888999998887777776789999999887.88888887555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.9
                     HHHHHHHHCEEEEEE-S CS
  UDPG_MGDP_dh_N 105 rsiaealkkgkvvvvkS 121
                     r+ ae + k  vvv++ 
      KIR63271.1 167 RAFAEEIGKTVVVVNRD 183
                     44444444444444443 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.7   3.6e-05     0.046       1      35 [.       7      41 ..       7      52 .. 0.91
   2 ?   -1.9   0.0       3.3   4.2e+03       9      25 ..     163     180 ..     163     205 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.6e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGra 35
                   +vGaGl G+ +A+ +a+ag +v+l +  d   Gr 
     KIR63271.1  7 VVGAGLMGSGIAQVAAQAGWQVTLRDLDDAATGRG 41
                   8***********************99999888875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.3
                    HHHHHHHHCC.TEEEEEE CS
  NAD_binding_8   9 lvaAylLaka.gfdvlll 25 
                    l++A++ a++ g+ v+++
     KIR63271.1 163 LATARAFAEEiGKTVVVV 180
                    567777777777777776 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.2   0.00012      0.16       2     101 ..       5     115 ..       4     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
                     EEEE--SHHHHHHHHHHHTTT--EEEE-S-H...........HHHHHHHHHSSBTTTBTT----T...TEEEES-HHHHHTT--EEEE---H..H CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlaenghevrlwvree...........elieeineehenvkyLpgiklpe...nlvattdlaealkgadiivlvvPs..q 80 
                      av+GaG  G+ +A+v a++g +v+l   ++           +   ++++  e  k  pg ++++    ++ ttdl+ a+++adi+v +v    +
      KIR63271.1   5 LAVVGAGLMGSGIAQVAAQAGWQVTLRDLDDaatgrglagirK---SLEKFAEKGKIEPG-EVDAalgRITPTTDLE-AVADADIVVEAVFErlE 94 
                     59************************99999889988873333...44444444444444.3333111678899996.55669999999976224 PP

                     HHHHHHHHHCCC--TT-EEEE CS
  NAD_Gly3P_dh_N  81 alrevlkklkgllkkkailvs 101
                     + +ev++ l++l +++a+l+ 
      KIR63271.1  95 IKQEVFRALDKLCRADAVLAT 115
                     567888888888888777765 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.7   3.9e-05      0.05       1      69 [.       4      89 ..       4     113 .. 0.80
   2 ?   -0.9   0.1         2   2.5e+03      37      58 ..     164     184 ..     158     212 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.9e-05
                   EEEEETTSHHHHHHHHHHHHTTS.....-GGCEEEEEESSCCCHHHHHHHHC..............-EEECECHHHHHHH-SEEEE-S CS
  F420_oxidored  1 kigiiGaGnmgealasgllaaga.....qpheivvansrnpekaeelaeelg..............vkvtavdneeaaeeadvvvlav 69
                   +++++GaG mg+++a+ +++ag      +  +   a+ r    +++  e++                ++t+++  ea+++ad+vv av
     KIR63271.1  4 RLAVVGAGLMGSGIAQVAAQAGWqvtlrDLDDA--ATGRGLAGIRKSLEKFAekgkiepgevdaalGRITPTTDLEAVADADIVVEAV 89
                   689*******************55533222222..456666666666666558889**********9999999***********9888 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2
                    CCHHHHHHHHC-EEECECHHHH CS
  F420_oxidored  37 ekaeelaeelgvkvtavdneea 58 
                     +a+++aee+g +v    n + 
     KIR63271.1 164 ATARAFAEEIGKTVVV-VNRDI 184
                    5678888888876666.33333 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00029      0.37       1      32 [.       4      35 ..       4      59 .. 0.83
   2 ?   -0.9   0.0         2   2.5e+03      17      30 ..     168     182 ..     163     192 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00029
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversd 32
                +++vvG+G+ g   A+++a+ g +Vt+ +  d
  KIR63271.1  4 RLAVVGAGLMGSGIAQVAAQAGWQVTLRDLDD 35
                689***********************966555 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2
                 HH.HHTTSEEEEEES CS
   Pyr_redox  17 al.aelgkkVtvver 30 
                 a+  e+gk V vv r
  KIR63271.1 168 AFaEEIGKTVVVVNR 182
                 451559999999987 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.7     0.002       2.6       6      43 ..      13      51 ..      10     212 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.002
                  HHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTS CS
  adh_short_C2  6 IGraiAkalaeeGaevvltdlneea.kkrveelaeelga 43
                  +G +iA+ +a++G++v l dl+++a  + ++ + ++l++
    KIR63271.1 13 MGSGIAQVAAQAGWQVTLRDLDDAAtGRGLAGIRKSLEK 51
                  699********************9966666666665553 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.7     0.017        22      20      51 ..       4      34 ..       2      37 .. 0.83
   2 ?    5.5   0.1    0.0076       9.7      89     208 ..      62     196 ..      47     229 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.017
                EEEEE--SHHHHHHHHHHHHHTTTEEEEEESS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 20 kvllvGaGglGsellknLalsGvgkltlvDnD 51
                + ++vGaG  Gs +++  a +G  ++tl D D
  KIR63271.1  4 RLAVVGAGLMGSGIAQVAAQAGW-QVTLRDLD 34
                789****************9997.46666655 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0076
                 EEEEEES-CCGCCS-HHHHTT-SEEEEESSS.....HHHHHHHHHHHHHHT........-EE..EEEEEETTEEEEEEE.EECCS-ECTSS-T..GGS. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxx........xxx..xxxxxxxxxxxxxxx.xxxxxxxxxxxxx..xxxx RF
        ThiF  89 eveavteritdetvleellesvDlVvdalDn.....iearrlvnracvkkg........ipl..ieagtlgfegqvvvi.ipgktgcyeCldp..sste 169
                 ev a  +rit++t l e + ++D+Vv a+ +      e+ r+++++c+  +        ip+  i a t++ e+ v ++ ++   ++  C+ +   +t 
  KIR63271.1  62 EVDAALGRITPTTDL-EAVADADIVVEAVFErleikQEVFRALDKLCRADAvlatntsaIPVtqIAAVTERPESVVGTHfFSPVPMMKLCELVrgYKTS 159
                 788888899997644.88999999999976653333445566666666555444444443333355566666666666543345555556654666788 PP

                 EECCCCEEHHHHHHCTE-B-HHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 170 dptekkvplctsiagnipaiatttavvaglaalellkll 208
                 d+t +++ ++ + +g    +  ++  +ag + + l+ +l
  KIR63271.1 160 DETLATARAFAEEIG--KTVVVVNRDIAGFVTTRLIAAL 196
                 888888888877777..4455555555555555555554 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   9.3      0.02        26      28      97 ..       2      87 ..       1     210 [. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.02
                 --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCECEE................HCHHHHHHHHHHHH-SEEEE CS
  AlaDh_PNT_C 28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lgakfvev................lksqeellaeavkeadvvig 97
                 +++  v+G+G  G   +++a++ g +Vt+ D++ a+  +  + + ++ +e                  + +  +  eav++ad+v+ 
   KIR63271.1  2 AGRLAVVGAGLMGSGIAQVAAQAGWQVTLRDLDDAATGRGLAgIRKS-LEKfaekgkiepgevdaalGRITPTTDLEAVADADIVVE 87
                 57899***************************988754433313322.333344455566666666534444444455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2041.63
//
Query:       KIR63272.1  [L=282]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-24   85.5  18.0    3.3e-24   85.5  18.0    1.3  2  ABC2_membrane    ABC-2 type transporter
    8.6e-19   67.8   5.9    8.6e-19   67.8   5.9    2.0  2  ABC2_membrane_3  ABC-2 family transporter protein
    3.2e-13   49.6  10.2    2.1e-11   43.6  10.2    2.1  1  ABC2_membrane_2  ABC-2 family transporter protein
  ------ inclusion threshold ------
        1.5    8.8  14.1      0.035   14.0   7.3    1.8  2  ABC2_membrane_4  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5  18.0   7.4e-28   3.3e-24      10     210 .]      33     237 ..      29     237 .. 0.91
   2 ?   -4.7   0.7       2.9   1.3e+04     137     152 ..     257     272 ..     254     274 .. 0.52

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 7.4e-28
  ABC2_membrane  10 eflqrwrdpslgllwrliqplllalvfgtvfgn..lgnsedglnr.....pgllffsvlflafsaltsvapvferergvlerelvsplyslsayvl 98 
                    e+ q++r++++  ++ + +p++++l+f  +f++  +     g+++      g++++ +++++ + + ++ + +er+rgvl+r + +p+ + ++ ++
     KIR63272.1  33 EITQFLRSRESV-VFTMGFPIIMILIFAAIFSDeiA----PGVSYtqyfiTGMIATGLMTVS-FQNLGIWIPIERDRGVLKRYRGTPM-PKWVWFA 121
                    7899*****999.99*****************6432....3333344455888888888888.6777777999***************.******* PP

  ABC2_membrane  99 akvlvelpvsllqalifllivyflvgldls....rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwlq 190
                    +kv++ ++v++++++++l++++ l++l+l     r++ f  + +l + a++  g++is+la++++ +s +++ v l+l + sG+f+  +++p w+q
     KIR63272.1 122 GKVIMVVAVGVAETALLLAVSVALFDLELPgtagRWLTFGWVSVLGVTACTLCGIAISSLARTARSGSAVVTPVALVLQFISGVFFVFTNLPTWMQ 217
                    ****************************9999776699999999**************************************************** PP

  ABC2_membrane 191 wiaylnPltyavealrsnlf 210
                     +a l Pl+++ ++lrs+++
     KIR63272.1 218 QVAALFPLKWMCQGLRSVFL 237
                    *****************975 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 2.9
  ABC2_membrane 137 llltalaasslgllis 152
                    l+l ++++++l l++ 
     KIR63272.1 257 LVLGLWCVIGLVLCLT 272
                    4555555555555554 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   4.2    0.0057        26       3      26 ..      43      66 ..      41      73 .. 0.85
   2 !   67.8   5.9   1.9e-22   8.6e-19     158     342 ..      71     269 ..      63     274 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0057
  ABC2_membrane_3  3 fliitlllPiilvlllglifsnsv 26
                     ++++t  +Pii++l+++ ifs + 
       KIR63272.1 43 SVVFTMGFPIIMILIFAAIFSDEI 66
                     6789****************9765 PP

  == domain 2  score: 67.8 bits;  conditional E-value: 1.9e-22
  ABC2_membrane_3 158 nvasflvg.liliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilll...afglgipfg.nlglll.llf 245
                      ++++++++ +i+  l++++++++  +i  E+ ++++++   +++ ++  + +k++++++v++  ++l+l++   +f+l++p + + +l++ +++
       KIR63272.1  71 SYTQYFITgMIATGLMTVSFQNLGIWIPIERDRGVLKRYRGTPMPKWVWFAGKVIMVVAVGVAETALLLAVsvaLFDLELPGTaGRWLTFgWVS 164
                      566666666********************************************************99999655789978888899999999*** PP

  ABC2_membrane_3 246 llfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffapglgllrli......tgdplwe.......il 326
                      +l+  a++  g ++ssl ++++++++++++v l+l +++g++f++ +lp+++++++ ++P+ +  +gl ++             +       ++
       KIR63272.1 165 VLGVTACTLCGIAISSLARTARSGSAVVTPVALVLQFISGVFFVFTNLPTWMQQVAALFPLKWMCQGLRSVFlpdgfgA-----QepggsfeLG 253
                      ***********************************************************************96777551.....2344455577 PP

  ABC2_membrane_3 327 lsliilalfavvylll 342
                      +  ++l l +v+ l+l
       KIR63272.1 254 RVALVLGLWCVIGLVL 269
                      7777777777766665 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6  10.2   4.8e-15   2.1e-11      97     283 ..      97     274 ..      31     279 .. 0.81

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 4.8e-15
  ABC2_membrane_2  97 iagEkergTlkllLskPvsRdeillgKfigglaigla.iavallatvllalaiilalgivlaledllllvvasvlllllvvflalglllSsvar 189
                      i  E++rg lk+   +P++++   +gK+i  +a+g+a +a++l ++v l      +l+ + +++ +l++  +svl +++   +  g+++Ss+ar
       KIR63272.1  97 IPIERDRGVLKRYRGTPMPKWVWFAGKVIMVVAVGVAeTALLLAVSVAL-----FDLELPGTAGRWLTFGWVSVLGVTAC--TLCGIAISSLAR 183
                      5569******************************999999999999555.....9*******************777743..667999****** PP

  ABC2_membrane_2 190 ssreaaalalglfvvlailvpivlygvaellagpavpqeindflsllsptsayntllneilagsdlna.....lgstatnllilllllavllvl 278
                      ++r+  a++  + +vl+++++++   +++l++       +++ +  l p  ++ ++l++++  +++ a     ++  +  +l+l l++++ lvl
       KIR63272.1 184 TARSGSAVVTPVALVLQFISGVFF-VFTNLPT-------WMQQVAALFPLKWMCQGLRSVFLPDGFGAqepggSFELGRVALVLGLWCVIGLVL 269
                      888888888888888888888877.4455555.......8888**********************999*****9******************** PP

  ABC2_membrane_2 279 gyvlF 283
                      ++  F
       KIR63272.1 270 CLTTF 274
                      *9877 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   7.3   7.9e-06     0.035      15     171 ..      44     197 ..      35     208 .. 0.70
   2 ?   -4.1   0.3       2.8   1.3e+04     104     111 ..     264     271 ..     255     277 .. 0.40

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.9e-06
  ABC2_membrane_4  15 vwllvlaallvpllallyfnllgktgldpaefyslsvfgftlllllplilgiiasylifrEeqndtlknLltiPvsrtklllaKlivllllsvl 108
                      v +++     +p++++l+f+++ ++++ p   y+++ +  ++ + l+++     ++ i  E++ + lk  +  P+ +   +++K+i+++ + v+
       KIR63272.1  44 VVFTM----GFPIIMILIFAAIFSDEIAPGVSYTQYFITGMIATGLMTVSFQNLGIWIPIERDRGVLKRYRGTPMPKWVWFAGKVIMVVAVGVA 133
                      44444....455555666666666677777777766666566666677777788999*******************************999998 PP

  ABC2_membrane_4 109 lmlvtf.litvlfallsgfvgfsvklvlellkkclelgllvffavlpiialvllkksyvlplil 171
                       + +++ ++++lf l + +++  + ++ ++ +  ++ + l+ +a++ +   +   +  v+p++l
       KIR63272.1 134 ETALLLaVSVALFDLELPGTAGRWLTFGWVSVLGVTACTLCGIAISSLARTARSGSAVVTPVAL 197
                      7765551555667777777888888888877766666666666666654445555555666655 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2.8
  ABC2_membrane_4 104 llsvllml 111
                      ++ ++l+l
       KIR63272.1 264 VIGLVLCL 271
                      22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 1910.02
//
Query:       KIR63273.1  [L=282]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-27   95.4   0.0    5.7e-27   94.9   0.0    1.2  1  ABC_tran    ABC transporter
      4e-15   56.4   0.0    3.7e-09   36.8   0.0    2.1  2  AAA_21      AAA domain, putative AbiEii toxin, Type IV TA sys
    6.2e-05   22.9   0.0      0.055   13.2   0.0    2.0  2  AAA_15      AAA ATPase domain
     0.0053   16.5   0.0        2.2    8.0   0.0    2.1  2  AAA_24      AAA domain
     0.0072   16.5   0.4       0.43   10.8   0.1    2.9  2  SbcCD_C     Putative exonuclease SbcCD, C subunit
     0.0082   15.6   0.0      0.015   14.8   0.0    1.4  1  KdpD        Osmosensitive K+ channel His kinase sensor domain
     0.0091   16.5   0.0      0.012   16.1   0.0    1.2  1  AAA_23      AAA domain
  ------ inclusion threshold ------
      0.033   13.8   0.0      0.051   13.2   0.0    1.3  1  SRP54       SRP54-type protein, GTPase domain
       0.04   13.6   0.0        0.2   11.4   0.0    2.0  2  AAA_30      AAA domain
      0.042   13.3   0.0          7    6.0   0.0    2.1  2  SMC_N       RecF/RecN/SMC N terminal domain
      0.043   13.5   0.0        8.7    6.0   0.0    2.2  2  IstB_IS21   IstB-like ATP binding protein
       0.05   13.3   0.0      0.096   12.4   0.0    1.4  1  AAA_29      P-loop containing region of AAA domain
       0.12   12.6   0.1       0.34   11.1   0.0    1.8  2  AAA_28      AAA domain
       0.13   12.6   0.1        1.1    9.5   0.1    2.4  2  AAA_22      AAA domain
       0.15   11.8   0.0       0.22   11.3   0.0    1.2  1  ATP_bind_1  Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   0.0   4.8e-30   5.7e-27       3     136 ..      24     160 ..      22     161 .. 0.96

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 4.8e-30
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren........esdeeiekalsklg 93 
                  v+l++++ge+ a++G+nGaGK+t +++l g  + ++Ge+++ g d  + +++ +r+++g++ q +  f+eltv+e          + ++++k+++++g
  KIR63273.1  24 GVDLDVRRGEVFALLGPNGAGKTTTVEILEGYRRRDSGEVRVLGSDPAD-PTPDWRSRVGIVLQGTGEFDELTVGEVvrhfsgfyPDADDPAKVVERVG 121
                 699********************************************99.9*********************************888889********* PP

                 TGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  94 lkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 l  +++ +     ++LSgGqk+r+ +a  ++ +p+ll+lDEpt
  KIR63273.1 122 LGAKAKART----HTLSGGQKRRLDVALGIIGRPELLFLDEPT 160
                 ***887777....*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.8e-06    0.0021       2      28 ..      35      62 ..      34     106 .. 0.71
   2 !   36.8   0.0   3.1e-12   3.7e-09     236     297 ..     132     190 ..      93     193 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.8e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl.drd 28
                 +l GpNg+GK++  ++l++ +r   ++
  KIR63273.1 35 FALLGPNGAGKTTTVEILEGYRRRdSGE 62
                689****************998743222 PP

  == domain 2  score: 36.8 bits;  conditional E-value: 3.1e-12
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  lS G+kr l +++ ++ ++    ll++DEp +g +P++ r+++el+++l++ g+ ++ltTH
  KIR63273.1 132 TLSGGQKRRLDVALGIIGRP---ELLFLDEPTTGFDPEARREFWELIRDLAAAGTTIVLTTH 190
                 57999999999999999999...9***********************999999********* PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0022       2.6      25      44 ..      34      53 ..      23      54 .. 0.84
   2 !   13.2   0.0   4.6e-05     0.055     320     364 ..     147     190 ..     133     191 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0022
      AAA_15 25 ltvliGkNnsGKSsileald 44
                +  l G+N++GK++ +e+l+
  KIR63273.1 34 VFALLGPNGAGKTTTVEILE 53
                77899************996 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.6e-05
      AAA_15 320 keeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 +  ++ +l+++EP +   p+a +++++l+++la  +   +++tTH
  KIR63273.1 147 IIGRPELLFLDEPTTGFDPEARREFWELIRDLAAAGT-TIVLTTH 190
                 5677899*****************************7.9****** PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0018       2.2       4      22 ..      34      52 ..      31      61 .. 0.85
   2 !    6.4   0.0    0.0054       6.5     107     131 ..     167     191 ..     161     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0018
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 +++ Gp+g+GKTt++  l
  KIR63273.1 34 VFALLGPNGAGKTTTVEIL 52
                5789**********98765 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0054
      AAA_24 107 laeefrrllkklqelrknvifiahe 131
                 +++ef++l+++l +++ +++++ h 
  KIR63273.1 167 ARREFWELIRDLAAAGTTIVLTTHY 191
                 689*******************996 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00036      0.43      30      89 ..     130     176 ..     113     177 .. 0.72
   2 ?   -2.7   0.0       5.9   7.1e+03      65      75 ..     188     198 ..     180     202 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00036
     SbcCD_C  30 sgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 + tlSGG+k   + +al+      ++       +++l+fLDE   + D+e +++  el++
  KIR63273.1 130 THTLSGGQK-RRLDVALG-----IIG-------RPELLFLDEPTTGFDPEARREFWELIR 176
                 555555555.44444444.....222.......589******************999987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.9
     SbcCD_C  65 rlvfLDEAFsk 75 
                  +  LDEA + 
  KIR63273.1 188 TTHYLDEAEAL 198
                 56689999554 PP

>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.3e-05     0.015      62     153 ..     130     221 ..     113     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.3e-05
        KdpD  62 eveykgkeleeldldailarkpevvlvDelahtnapgsrhekryqdveelLeagid.VittvnvqhleslndvvekitgvrvretvPdevlee 153
                 + + +g + ++ld+   +  +pe++++De      p++r ++ ++ +++l +ag   V+tt  + + e l+d v  i   rv e  P ++l +
  KIR63273.1 130 THTLSGGQKRRLDVALGIIGRPELLFLDEPTTGFDPEAR-REFWELIRDLAAAGTTiVLTTHYLDEAEALADRVGVIAAGRVIEVAPPKLLGN 221
                 55667888999****9999**********8877766665.568***********984679999********************9999998865 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     1e-05     0.012      19      39 ..      32      52 ..       7      54 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1e-05
      AAA_23 19 kgltlItGpNGaGKTTildAi 39
                  ++++ GpNGaGKTT ++ +
  KIR63273.1 32 GEVFALLGPNGAGKTTTVEIL 52
                4699************99865 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.2e-05     0.051       3      35 ..      34      66 ..      32      71 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.2e-05
                EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEE CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkegkkvllv 35
                v++l+G++GaGKTtt+  L  + +++  +v + 
  KIR63273.1 34 VFALLGPNGAGKTTTVEILEGYRRRDSGEVRVL 66
                789*************99988887776666555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017       0.2      19      52 ..      33      66 ..      25      71 .. 0.83
   2 ?   -0.6   0.0      0.77   9.3e+02      43      68 ..     179     204 ..     114     215 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
      AAA_30 19 rvavltGpAGtGKttalkalreaweaaggrvigl 52
                 v +l Gp G+GKtt+++ l+   +++ g+v +l
  KIR63273.1 33 EVFALLGPNGAGKTTTVEILEGYRRRDSGEVRVL 66
                488999************9998888887787776 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.77
      AAA_30  43 eaaggrviglAptgkaAkvLaeelgi 68 
                 +aag ++++ ++    A++La+ +g+
  KIR63273.1 179 AAAGTTIVLTTHYLDEAEALADRVGV 204
                 44566777777777777777777765 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0059         7      26      42 ..      34      50 ..      21      53 .. 0.82
   2 ?    5.2   0.0      0.01        12     134     197 ..     130     189 ..      96     210 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0059
                EEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlld 42
                + a++GpNG+GK+  ++
  KIR63273.1 34 VFALLGPNGAGKTTTVE 50
                56899*******98765 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.01
                 TTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 134 kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivisl 197
                  ++LSgG+k  + +aL      + +  l +lDe     D + ++++ el++        iv + 
  KIR63273.1 130 THTLSGGQKRRLDVALG----IIGRPELLFLDEPTTGFDPEARREFWELIRDLAAAGTTIVLTT 189
                 5589*****98777775....4556668889********************9998877666553 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0073       8.7      44      61 ..      29      46 ..      19      54 .. 0.88
   2 ?    5.3   0.0     0.012        15      97     147 ..     139     188 ..     129     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0073
   IstB_IS21 44 iekkenivllGpsGvGKs 61
                +++ e ++llGp G+GK+
  KIR63273.1 29 VRRGEVFALLGPNGAGKT 46
                688999***********9 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.012
   IstB_IS21  97 gklaralkrllkvdllilDdlgllpldqaeaellfeviekryerrsiiits 147
                  +l  al  + +++ll lD+   + +d +++++++e+i +     ++i+ +
  KIR63273.1 139 RRLDVALGIIGRPELLFLDEPT-TGFDPEARREFWELIRDLAAAGTTIVLT 188
                 56777788899*********75.68*************9988776665543 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.1e-05     0.096      16      39 ..      26      49 ..      21      52 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.1e-05
      AAA_29 16 tieidlkgatlltGpsGsGKSTll 39
                ++++++ +++ l Gp+G+GK+T +
  KIR63273.1 26 DLDVRRGEVFALLGPNGAGKTTTV 49
                667776669************965 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00029      0.34       2      21 ..      35      54 ..      34      69 .. 0.80
   2 ?   -3.0   0.0       6.4   7.6e+03      15      26 ..     174     185 ..     164     202 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00029
      AAA_28  2 ivitGgestGKTtlleaLaa 21
                ++++G+ ++GKTt++e L+ 
  KIR63273.1 35 FALLGPNGAGKTTTVEILEG 54
                689**************994 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.4
      AAA_28  15 lleaLaargypv 26 
                 l++ Laa g+++
  KIR63273.1 174 LIRDLAAAGTTI 185
                 344444444443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00093       1.1       6      27 ..      33      54 ..      29     201 .. 0.71
   2 ?   -3.4   0.0       8.9   1.1e+04      50      70 ..     243     263 ..     239     278 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00093
      AAA_22  6 gilvvtGesGtGKTtllrrlle 27
                 + ++ G+ G+GKTt+++ l  
  KIR63273.1 33 EVFALLGPNGAGKTTTVEILEG 54
                567899**********987654 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.9
      AAA_22  50 stsskdllrellralglelka 70 
                 s +++ l  el+  +g e  +
  KIR63273.1 243 SATPTALVAELAARYGGEVPG 263
                 557888888888888877666 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00018      0.22       2      45 ..      38      81 ..      37      84 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
  ATP_bind_1  2 vGpaGsGKttfvgalseilelrgrsvavvNLDPAaeelpYeaav 45
                +Gp G+GKtt v+ l  +++    +v+v+  DPA  +  ++  v
  KIR63273.1 38 LGPNGAGKTTTVEILEGYRRRDSGEVRVLGSDPADPTPDWRSRV 81
                7*********************************8887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 1963.41
//
Query:       KIR63274.1  [L=667]
Description: protein meaA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.4e-130  435.5   0.0     3e-130  435.2   0.0    1.0  1  MM_CoA_mutase  Methylmalonyl-CoA mutase
    8.7e-17   61.3   1.5    8.7e-17   61.3   1.5    2.0  3  B12-binding    B12 binding domain


Domain annotation for each model (and alignments):
>> MM_CoA_mutase  Methylmalonyl-CoA mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  435.2   0.0  3.3e-134    3e-130      41     513 .]      12     497 ..       7     497 .. 0.96

  Alignments for each domain:
  == domain 1  score: 435.2 bits;  conditional E-value: 3.3e-134
  MM_CoA_mutase  41 yrgrpWtirqyagfstaeetnerykklLeaGqtglsvafdlptlrgyDsdhpraegevGkaGvaidsledmetlldgidldkvsvsmtinaaalpl 136
                    +r+rpW +r yag+s+a+++n+ ++++L++Gqtglsvafdlpt+ gyD+dh+ a+gevG++Gv++++l dm++l+dgi+l+++++smtina+a+ l
     KIR63274.1  12 ERDRPWVMRTYAGHSSAAASNALFRRNLAKGQTGLSVAFDLPTQTGYDPDHELAAGEVGRVGVPVAHLGDMRALFDGIPLADMNTSMTINAPAMWL 107
                    5889******************************************************************************************** PP

  MM_CoA_mutase 137 lamylaaaeeqgvdleklsgtiqnDiLkellargtyiyppepslrliadiieyaakevpkfntisvsgyhireaGatavqElAftladGveYvral 232
                    la+y ++a+eqg++l+++ gt qnDi+ke+l+rgtyi+pp+ slrl+ad+++y+  ++p++n+++v +yh++eaGat+vqE++f+la++v+ ++a+
     KIR63274.1 108 LALYGTVAAEQGAELARCAGTTQNDIIKEYLSRGTYIFPPAASLRLTADLVAYTLLRMPRWNPVNVCSYHLQEAGATPVQEVGFALATAVAVLDAV 203
                    ************************************************************************************************ PP

  MM_CoA_mutase 233 leaGl....dvdefaprlsFffaigsdffeeiAklRAaRrlWarivkekfgakeekslklrvhaqTsgvsltaqdpyvNilRttlealaAvl...g 321
                     + G      + +++ r+sFf+++g  f ee Ak+RA   lW +i+++++g ++++++++r+ +q  +  lt+ +p++Ni R+ le l+ +l   +
     KIR63274.1 204 RDCGQvppgRMGDVVARISFFVNAGVRFVEETAKMRAFGVLWDEIARDRYGVTDPRQRRFRYGVQVNSLGLTEAQPENNIQRIVLEMLGVTLsrdA 299
                    *988633336889****************************************************************************9994445 PP

  MM_CoA_mutase 322 gtqslhtnsfDealalPtefsariArntqlilaeEsgvakvvDPlgGSyyvEaLTdelaekawklfqeieeaGGmlkaiesGlvqeeiaesaarrq 417
                     + +++  +++eal+lP  f ++ ++++q++la+Es + +  D ++GS+++ aL d +   a + ++++ e+GG+++a+esG+++++  +s a+r+
     KIR63274.1 300 RARAVQLPAWNEALGLPRPFDQQWSLRMQQVLAYESDLLEYPDLFAGSHVMTALVDGIVTGARAELEKVLEMGGVVAAVESGYLKSALVASLAERR 395
                    799********************************************************************************************* PP

  MM_CoA_mutase 418 kaiesrkevivGvNkfrpneeek......elevlkideeveerqaerlealraerdeaavkaaLaalge.aarsenllaraveaaralatlGeisd 506
                    +++es+ +++vGvN+f+ ++e        +  ++++d++ve+++++++++ ra rd+aav+aaL++l++ aa + nl+++++e++ra  t Ge + 
     KIR63274.1 396 RRLESGADTVVGVNRFT-ETEPSpltaagADAIEQVDPAVEAAAVAAVREWRAGRDGAAVDAALERLRAdAATTANLMPATLECVRAGVTTGEWAG 490
                    ****************6.4433445656577788888999*****************************777766********************* PP

  MM_CoA_mutase 507 aleevfg 513
                    al++vfg
     KIR63274.1 491 ALRRVFG 497
                    *****98 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.2   1.1e+04      71      92 ..     391     412 ..     388     438 .. 0.60
   2 ?   -2.9   0.0      0.73   6.6e+03      41      69 ..     452     480 ..     419     485 .. 0.69
   3 !   61.3   1.5   9.6e-21   8.7e-17       3     113 ..     538     646 ..     536     654 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.2
  B12-binding  71 lvellkrirprvkvvvGGahps 92 
                  l+e+++r  +++ +vvG   ++
   KIR63274.1 391 LAERRRRLESGADTVVGVNRFT 412
                  5566666666666666644444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.73
  B12-binding  41 edivaairaekpdvvglSalltsqleavk 69 
                  +++ aa++++++d+     l+ ++le+v+
   KIR63274.1 452 AAVDAALERLRADAATTANLMPATLECVR 480
                  56677777777777766666666666665 PP

  == domain 3  score: 61.3 bits;  conditional E-value: 9.6e-21
  B12-binding   3 vllatvggdlhplGlavlaaalrdagfeVqllganvenedivaairaekpdvvglSalltsqleavkelvel.lkrirprvkvvvGGahpsldpeetl 99 
                   l+++ g d h+ G+ ++a   rdagfeV++ g+  ++ +ivaa+ +e++d+vglS+l++s+l+ v ++++  +++ r +++vvvGG++p  d++  l
   KIR63274.1 538 LLVGKPGLDGHSNGAEQIAVRARDAGFEVIYQGIRLTAGQIVAAAVEEDVDLVGLSVLSGSHLAVVPAVLDGlRAAGRGDLPVVVGGIIPASDADA-L 634
                  689999******************************************************************76667789*************999.6 PP

  B12-binding 100 eaklgiddvvvgeg 113
                  +a  g +  v+   
   KIR63274.1 635 RA-AG-VARVFTPK 646
                  66.88.66677665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 4157.95
//
Query:       KIR63275.1  [L=98]
Description: hypothetical protein TK50_20715 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-08   34.8  11.0    0.00066   19.9   0.3    2.2  2  DUF1540   Domain of Unknown Function (DUF1540)


Domain annotation for each model (and alignments):
>> DUF1540  Domain of Unknown Function (DUF1540)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   5.3   1.2e-07    0.0021       3      45 .]      13      44 ..      12      44 .. 0.90
   2 !   19.9   0.3   3.7e-08   0.00066       3      45 .]      63      95 ..      62      95 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.2e-07
     DUF1540  3 CsVsnCkYnkegnkCtaeeIeVesdstaesnaksseeTcCktF 45
                C V  C Yn+    C+a +I++   +       s ++  C+tF
  KIR63275.1 13 CVVAACAYNH-TGDCHAFAITI---G-------STDHAHCHTF 44
                **********.***********...3.......3789999999 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 3.7e-08
     DUF1540  3 CsVsnCkYnkegnkCtaeeIeVesdstaesnaksseeTcCktF 45
                C+ s+C++n+ + +C+a +I V +d         ++  +C t+
  KIR63275.1 63 CQRSDCRHNA-DLECHAPAIRVGPD---------NDMADCMTY 95
                8889******.***********444.........466666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 831.92
//
Query:       KIR63276.1  [L=223]
Description: polysaccharide deacetylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-23   81.7   0.0      7e-23   80.9   0.0    1.4  1  Polysacc_deac_1  Polysaccharide deacetylase
  ------ inclusion threshold ------
       0.15   12.2   0.0       0.23   11.5   0.0    1.3  1  DUF1638          Protein of unknown function (DUF1638)


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.0   7.8e-27     7e-23       2     123 ..       5     148 ..       4     149 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 7.8e-27
                      SHTTSTEEEEEEEESS..............CSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTT.EEEEE--SS--EG.......GG CS
  Polysacc_deac_1   2 gtkgkksvalTfDdgp..............rdntteilpvLkkykvkatffvigglvedypdevremaasG.veignHtinhsnl.......kr 73 
                      g++++  valTfD  +              +    +i+++L+++ v+atff++g++ve+yp   r++a ++ +e++nHt+ h  +        +
       KIR63276.1   5 GPRTGDLVALTFDADMtdamryqlrsgavrSYANLAIIDLLERERVPATFFLTGKWVEEYPGVTRRLAGNPrFELANHTYGHLAFtadcyqlPT 98 
                      6788999********99***********976677799**********************************************555555555** PP

                      SHHHHHHHHHHHHHHHHHHHHS----EEE-GGGEE-HHHHHHHHHTT.EE CS
  Polysacc_deac_1  74 lseeevrreierakdalrkalgreprlfryPygsasatvlevarelgfay 123
                        +++++++++r+ d++    gr++r+fr+P++++++ +l++++ lg+++
       KIR63276.1  99 IPRQRMAADVARTFDVIAPYGGRQTRYFRFPGLCHDRAALTELAPLGVTV 148
                      *********************************************99986 PP

>> DUF1638  Protein of unknown function (DUF1638)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.5e-05      0.23      75     143 ..      47     112 ..      29     117 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.5e-05
     DUF1638  75 lkdekgtffltpgwvkewdrlvlekygeelarmifgkllkgYkrlvyidtgltddpel..eeraeefaarl 143
                 +++ + tfflt  wv+e+  + ++++   + r+ + +  + Y +l++   ++++ p +  + +a ++a+++
  KIR63276.1  47 RERVPATFFLTGKWVEEYPGV-TRRL-AGNPRFELAN--HTYGHLAFT-ADCYQLPTIprQRMAADVARTF 112
                 344566************988.7888.4556666666..679999999.7799998887555566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1701.12
//
Query:       KIR63277.1  [L=203]
Description: hypothetical protein TK50_20725 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1632.40
//
Query:       KIR63278.1  [L=205]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-54  184.6  19.4    1.5e-54  184.4  19.4    1.0  1  DUF4126          Domain of unknown function (DUF4126)
     0.0014   18.6   0.1     0.0034   17.3   0.1    1.6  1  DUF3377          Domain of unknown function (DUF3377)
  ------ inclusion threshold ------
      0.034   14.6   1.4       0.15   12.5   0.1    2.0  2  DUF2569          Protein of unknown function (DUF2569)
      0.063   13.0   1.9      0.093   12.5   0.7    1.6  2  DUF4448          Protein of unknown function (DUF4448)
       0.11   12.1   0.5        1.4    8.5   0.1    2.2  2  TMEM100          Transmembrane protein 100
        0.6   10.4   3.0       0.93    9.8   0.2    2.2  3  DUF3619          Protein of unknown function (DUF3619)


Domain annotation for each model (and alignments):
>> DUF4126  Domain of unknown function (DUF4126)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.4  19.4   4.9e-58   1.5e-54       2     176 .]       5     187 ..       4     187 .. 0.94

  Alignments for each domain:
  == domain 1  score: 184.4 bits;  conditional E-value: 4.9e-58
     DUF4126   2 llglglsaaaGlrvylplLllglaarfg.liplpeglewlgspvvlgalavltlvElvadkipvvdsvldtiqtfvrpvaGallaaaaagav....e.. 93 
                 l+g gl+a+aGl++y+plL++gl+ar++ li+lp+g++wlg+ +v+++lavl++vE+vadk+pv+d+v+d++qt+vrp+aG+l + a  ++        
  KIR63278.1   5 LTGTGLAASAGLNAYIPLLTMGLLARYTdLIDLPSGWQWLGNGWVVAILAVLLAVEVVADKVPVLDHVNDVVQTVVRPTAGGLAFGAGSTSEtvtvSdp 103
                 89**************************99********************************************************9999877655145 PP

     DUF4126  94 ...ldpvlkavlavlaGgllAlvvhlvkaltRlasnastegfgnpvvstlEdvlavvlvllaillPvlalvllllllllalrllkr 176
                    +  + + ++ v++G+l+Al vhl+k+++R+++na+t+gfg+pv+st+Ed+++vv++l+ai lPvl+l++ll l+++ +++l+r
  KIR63278.1 104 gsfF--SSNDWVPVVTGVLIALGVHLLKSAARPVINATTAGFGAPVASTAEDATSVVMSLVAIILPVLVLAFLLGLVAFTVWFLRR 187
                 5533..36679***********************************************************************9986 PP

>> DUF3377  Domain of unknown function (DUF3377)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.1e-06    0.0034      16      55 ..     148     188 ..     143     195 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.1e-06
     DUF3377  16 vvkiddeesgtvnaiaVvvPlvLllciLvliyailq.frrk 55 
                   + +d +s +++++a+++P++ l+++L+l++  +  +rr+
  KIR63278.1 148 ASTAEDATSVVMSLVAIILPVLVLAFLLGLVAFTVWfLRRR 188
                 56678887888******************997655526765 PP

>> DUF2569  Protein of unknown function (DUF2569)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.18   5.4e+02       5      17 ..      46      58 ..      11      82 .. 0.78
   2 ?   12.5   0.1   4.9e-05      0.15       4      82 ..     116     193 ..     114     200 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.18
     DUF2569  5 gGwLllpligLil 17
                +Gw +++l++L+ 
  KIR63278.1 46 NGWVVAILAVLLA 58
                6777777777654 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4.9e-05
     DUF2569   4 igGwLllpligLilsllsialelidalkalfsleewstlknleslltlll..ileiitnialvafsilllvlffkrrksfP 82 
                 + G L+++ + L+ s+++    +i+a+ a f     st ++++s++++l+  il +++ ++l+ +  ++++++ +rr++ +
  KIR63278.1 116 VTGVLIALGVHLLKSAAR---PVINATTAGFGAPVASTAEDATSVVMSLVaiILPVLVLAFLLGLVAFTVWFLRRRRDRRR 193
                 689999999999999999...666666679999999999999994444430134455555555555666777777777655 PP

>> DUF4448  Protein of unknown function (DUF4448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.1   3.4e+03      77      91 ..     104     119 ..      87     123 .. 0.64
   2 ?   12.5   0.7   3.1e-05     0.093     158     187 ..     160     189 ..     145     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.1
     DUF4448  77 ksffss.dwlpnsdGf 91 
                  sffss dw+p   G+
  KIR63278.1 104 GSFFSSnDWVPVVTGV 119
                 5666653678877776 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.1e-05
     DUF4448 158 yalaialPvvvvvlvlgligfvlwnrkkrd 187
                   +ai lPv v+ ++lgl++f +w  ++r+
  KIR63278.1 160 SLVAIILPVLVLAFLLGLVAFTVWFLRRRR 189
                 579*************99999999877775 PP

>> TMEM100  Transmembrane protein 100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.064   1.9e+02      77     104 ..     105     132 ..      88     134 .. 0.85
   2 ?    8.5   0.1   0.00046       1.4      83     124 ..     157     198 ..     138     204 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.064
     TMEM100  77 tfnshgsvisvlglvLLsaGlvllassa 104
                 +f s++  + v++ vL++ G+ ll s+a
  KIR63278.1 105 SFFSSNDWVPVVTGVLIALGVHLLKSAA 132
                 67788888899999**********9997 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00046
     TMEM100  83 svisvlglvL..LsaGlvllassavCWkvrrrrkkerrreseta 124
                  v+s ++++L  L   ++l +++   W +rrrr  +rrre ++a
  KIR63278.1 157 VVMSLVAIILpvLVLAFLLGLVAFTVWFLRRRR--DRRRECQAA 198
                 34566666654466778888899999**99999..999999987 PP

>> DUF3619  Protein of unknown function (DUF3619)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3      0.24   7.2e+02      72      97 ..      41      66 ..      25      80 .. 0.69
   2 ?   -1.4   0.0      0.93   2.8e+03      62      90 ..      97     124 ..      62     134 .. 0.54
   3 ?    9.8   0.2   0.00031      0.93      44     106 ..     130     195 ..     121     199 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.24
     DUF3619 72 lrrlalalpllalvvgLvgiaywqdq 97
                ++ l+  + +++l+v+L++  ++++ 
  KIR63278.1 41 WQWLGNGWVVAILAVLLAVEVVADKV 66
                56677777777777777766655555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.93
     DUF3619  62 tlgeeeagswlrrlalalpllalvvgLvg 90 
                 t++ ++ gs++++ + ++p+++ v++ +g
  KIR63278.1  97 TVTVSDPGSFFSS-NDWVPVVTGVLIALG 124
                 1333335666655.667777776655444 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00031
     DUF3619  44 aaravaaalalagagasltlgeeeagswlrr.lalalpllalv..vgLvgiaywqdqqrvaelaei 106
                 +a++ + ++ +ag ga +++++e+a+s++ + +a +lp+l+l+  +gLv++++w  ++r +   e 
  KIR63278.1 130 SAARPVINATTAGFGAPVASTAEDATSVVMSlVAIILPVLVLAflLGLVAFTVWFLRRRRDRRREC 195
                 456677788899999999987777666555527788999988766999**9999887777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1171  (0.0653132); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 1595.28
//
Query:       KIR63279.1  [L=219]
Description: endonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-79  265.9   0.0    2.8e-79  265.7   0.0    1.0  1  NucS      Endonuclease NucS
     0.0038   17.4   0.0     0.0067   16.6   0.0    1.4  1  UPF0102   Uncharacterised protein family UPF0102
  ------ inclusion threshold ------
      0.029   13.7   0.0       0.04   13.3   0.0    1.1  1  DnaB_C    DnaB-like helicase C terminal domain
      0.046   13.7   0.0      0.071   13.1   0.0    1.3  1  Mrr_cat   Restriction endonuclease


Domain annotation for each model (and alignments):
>> NucS  Endonuclease NucS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.7   0.0   6.2e-83   2.8e-79       5     229 .]       2     219 .]       1     219 [] 0.97

  Alignments for each domain:
  == domain 1  score: 265.7 bits;  conditional E-value: 6.2e-83
        NucS   5 lvvlarCkvsyeGraksrLeegerlivikpdGaflvhkd.rkvePvnWqppkssltaevedgslilksirrkpeeeLkveieevehasayeledveelv 102
                 ++v+a+C+v+y+Gr+ ++L+ + rl+++k+dG++++h+d r+++P+nW++p+++l      +   ++ + +k++eeL++++eev ++++yel+++++l 
  KIR63279.1   2 RLVIAKCSVDYVGRLSAHLPLATRLLMVKADGSVSIHADdRAYKPLNWMSPPCRLE-----EAPGVWRVVNKAGEELRITLEEVFQDTSYELGVDPGLR 95 
                 89************************************99**************98.....445699******************************** PP

        NucS 103 ldGseaelaeliiehpdLieeGfkpvareyavaiGivdiLgkdeegklvivelkrrkaevdaveqLkryvellkedsvldkvrGvlvapsittdaekll 201
                 +dG+ea+l+el++ +p  ++eG+++v+rey++aiG+vd+L++d + + v+ve+krr +e+d+veqL+ry+el+++d  l++v Gv++a++i+++a+ l+
  KIR63279.1  96 KDGVEAHLQELLAANPTALGEGYTLVRREYMTAIGPVDLLCRDADLGAVAVEVKRR-GEIDGVEQLTRYLELMNRDPLLAPVTGVFAAQEIKPQARVLA 193
                 *******************************************************9.****************************************** PP

        NucS 202 keeglefkeldppkdskrnidskklrvl 229
                 +++g+++  +d  +d  r+i+ ++l+++
  KIR63279.1 194 TDRGIRCVVVD--YDKLRGIERDELTLF 219
                 ***********..999999999998876 PP

>> UPF0102  Uncharacterised protein family UPF0102
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.5e-06    0.0067      12      45 ..     116     152 ..     105     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.5e-06
                 TT-EEEEEEEEETTEEEEEEE.....TTEEEEEEEEE-. CS
     UPF0102  12 kgyeilernwrcragEiDiia.....tevlvfvEVKtRs 45 
                 +gy+++ r++ + +g +D+ +     +   v vEVK R 
  KIR63279.1 116 EGYTLVRREYMTAIGPVDLLCrdadlG--AVAVEVKRRG 152
                 79********************99554..9*******94 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.9e-06      0.04      74     139 ..     144     207 ..     134     215 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.9e-06
                 XXHHHHHHTTSXHHHHHHHHHHHHHHHHSEEEEEEXSSXCHHHHHHHHHHHHHHTTEEEEEEEEGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  74 idskklrtgklkeedweklteaieelseaklfiddtpaltvseirskarrlkkekglgliviDyLq 139
                 +  +  r+g+++   +e+lt+ +e +++ +l+   t  +  +ei+ +ar l++++g++++v+Dy +
  KIR63279.1 144 VAVEVKRRGEIDG--VEQLTRYLELMNRDPLLAPVTGVFAAQEIKPQARVLATDRGIRCVVVDYDK 207
                 5555557777754..899**********************************************55 PP

>> Mrr_cat  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.6e-05     0.071      20     111 ..     116     208 ..      97     211 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.6e-05
                 HSSSEEE---B-TTSSB--EEEETTEEEEEEEEEEE--TS-B-HHHHHHHHHHCTTS....SEEEEEESS-B-HHHHHHHHT.T--EEEE-HHHH CS
     Mrr_cat  20 lGykeveltgrsgDggiDliakkdplgserilvqaKryknkvgvkeVqeligalkkrg..adkgifvttsdftkaAreeaee.lnkieLldgdeL 111
                 +Gy+ v++   ++ g +Dl+ + ++lg   ++v++Kr+    gv+++++ +  ++     a    +  +++++++Ar  a + + + +++d d+L
  KIR63279.1 116 EGYTLVRREYMTAIGPVDLLCRDADLG--AVAVEVKRRGEIDGVEQLTRYLELMNRDPllAPVTGVFAAQEIKPQARVLATDrGIRCVVVDYDKL 208
                 5788777777788899******99988..*********999*********99999854446666677899999****999772457788888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1935.09
//
Query:       KIR63280.1  [L=500]
Description: aldehyde dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.8e-123  411.8   0.0   3.4e-123  411.6   0.0    1.0  1  Aldedh      Aldehyde dehydrogenase family
     0.0049   16.1   0.1     0.0092   15.2   0.1    1.4  1  NAD_kinase  ATP-NAD kinase


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  411.6   0.0  3.8e-127  3.4e-123       8     462 .]      16     464 ..      12     464 .. 0.97

  Alignments for each domain:
  == domain 1  score: 411.6 bits;  conditional E-value: 3.8e-127
                 EEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH CS
      Aldedh   8 tievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelaek 106
                 ++ +++Patg ++++ p a  +dv +av++A+ea   wa l ++ R+e L +++ +l++r eelael+ +e Gkp+ +a  ev  ai++++++a+ a +
  KIR63280.1  16 RLVSTSPATGAEVGRLPVAAGDDVTRAVERAREAAGWWAGLGFTGRRERLLRWRGVLARRIEELAELMHAEGGKPVPDAIVEVLTAIEHIDWAARNAGQ 114
                 56789********************************************************************************************** PP

                 .HSEEEEEEC...TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHH CS
      Aldedh 107 .legevlpss...egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealv 201
                  l+ + + s+   ++ +    ++P+Gvvg+I PWN+P++++++++a alaaGNtvvlKP+e tp++   l+  ++e+   + vl+ v+g g +vg+al+
  KIR63280.1 115 vLRPRRVRSRlilAEFTGHLEYQPYGVVGVIGPWNYPVFTPIGSTAYALAAGNTVVLKPSEYTPVVGQWLVDSLAEVVPEQPVLTAVHGLG-DVGAALC 212
                 888899888679999*************************************************************877788*******77.7****** PP

                 H-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS- CS
      Aldedh 202 ehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgd 300
                 +  +v+k++ftGst++++k+++a+a++l++v+lE GGk+++iv +daDld+a+ea+v+g + naGQ+Ci ++r++  e ++d+fv k+ve+a +l+vg 
  KIR63280.1 213 R-SGVNKLAFTGSTATAKKVMAACAETLTPVLLEAGGKDAMIVDSDADLDAAAEACVWGGLTNAGQTCIGIERVYAVEPVFDAFVGKVVERAGRLTVGA 310
                 9.5***********************************************************************************************9 PP

                 TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEE CS
      Aldedh 301 pldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaa 399
                 +    +d+GP++ + ql+ +++++++a ++g + +lGg    a+  +  +v+Pt+l +v++d+  ++eE+FGP l++ +++d eeai  aN+ +yGL++
  KIR63280.1 311 D---GSDIGPITMPGQLDVIRRHIDDALARGGRAVLGG----ADAVQPPYVRPTILVDVPEDSLAVREETFGPTLTINRVRDAEEAITRANALPYGLGG 402
                 8...89********************************....6678999************************************************** PP

                 EEE-SBHHHHHHHHHHS-SSEEEESSSST--TTT.SEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 400 gvftkdleraervaerleaGnvyiNdsttgaaea.lpfgGvkqSglGreggkegleeytevktv 462
                 +vf++  +ra  +a+rl+ G+  +N++ t+a  + lpfgGv++Sg+Gr +g++gl+e+ + k+v
  KIR63280.1 403 SVFGR--RRAVAIARRLRSGMAAVNSTLTFAGMStLPFGGVGESGFGRIHGEDGLREFGRPKAV 464
                 ****5..5*******************98888777***********************999986 PP

>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1     1e-06    0.0092     202     220 ..     152     170 ..     124     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1e-06
                 EE-TGGGGTHHHHTT--EE CS
  NAD_kinase 202 vstPtGstayslsaGgpli 220
                 v tP+Gstay+l+aG+ ++
  KIR63280.1 152 VFTPIGSTAYALAAGNTVV 170
                 89**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3405.12
//
Query:       KIR63281.1  [L=142]
Description: signal peptide protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-19   69.7   0.0    2.3e-19   69.5   0.0    1.1  1  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d
    7.4e-18   64.7   0.0    9.3e-18   64.4   0.0    1.1  1  FHA           FHA domain
     0.0082   16.6   0.0      0.014   15.8   0.0    1.4  1  TetR_C_28     Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   3.9e-23   2.3e-19       4      90 ..      15     102 ..      12     104 .. 0.95

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 3.9e-23
                   CCCCTT-EEEETTEEEEEES-TT-SEE---TTS-TT-EEEEEETTEEEEEE-CESS--EETTEE-SECC.--TTSEEEETTEEEEEEE CS
  Yop-YscD_cpl   4 sGpdkGaeveLeegevviGsdedcDivLsDkevsrkhlkLeveeesvrledlgsrngllvngerveele.lrpgdvlelGttelalvk 90 
                    Gp +Ga+++L+++  viG++ +  + ++D+ +sr+h+++++ +++v+ledlgs+ng+++n++r+e  e l++gdv+ lG tel++ +
    KIR63281.1  15 GGPMRGASFRLSRTPQVIGRATTVQVSVDDPHLSRRHASVRLAADGVWLEDLGSTNGTWLNDRRIEMPElLSDGDVIRLGRTELRFFD 102
                   69****************************************************************8888**************9976 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   1.6e-21   9.3e-18       2      69 .]      31      94 ..      30      94 .. 0.98

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 1.6e-21
                EEESSTTSSEETTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA  2 tiGRssdcdivlddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69
                +iGR+ + ++ +ddp +Sr+Ha ++   +  +v+leDlgS+nGt++N++ri+   p  L++gdvi+lG
  KIR63281.1 31 VIGRATTVQVSVDDPHLSRRHASVRLAAD--GVWLEDLGSTNGTWLNDRRIEM--PELLSDGDVIRLG 94
                69***************************..*********************9..***********98 PP

>> TetR_C_28  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.3e-06     0.014      53      75 ..      45      68 ..      25      81 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.3e-06
                HH.HHHHHHHHHHHHHHHHHHHHS CS
   TetR_C_28 53 ld.pvlatlvrlAadGlwlaellg 75
                +  +++   vrlAadG+wl +l  
  KIR63281.1 45 PHlSRRHASVRLAADGVWLEDLGS 68
                4446778889**********9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       169  (0.00942607); expected 358.6 (0.02)
Passed bias filter:                      151  (0.00842211); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1044.56
//
Query:       KIR63282.1  [L=352]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-21   76.8  31.7    1.9e-20   74.4  31.7    1.9  1  Abhydrolase_6    Alpha/beta hydrolase family
    6.7e-16   58.7   0.1    1.5e-15   57.5   0.1    1.6  1  Abhydrolase_1    alpha/beta hydrolase fold
    1.2e-15   57.5   0.1    2.6e-15   56.3   0.0    1.5  2  Hydrolase_4      Serine aminopeptidase, S33
     0.0005   19.9   0.1       0.56    9.9   0.1    2.3  2  PGAP1            PGAP1-like protein
    0.00075   19.2   0.0     0.0011   18.7   0.0    1.4  1  Esterase         Putative esterase
     0.0059   16.5   0.0       0.01   15.7   0.0    1.5  1  Ser_hydrolase    Serine hydrolase
  ------ inclusion threshold ------
      0.028   13.8   0.0      0.045   13.2   0.0    1.2  1  FAM92            FAM92 protein
      0.068   13.3   0.0       0.12   12.4   0.0    1.4  1  Thioesterase     Thioesterase domain
      0.073   12.5   0.0       0.13   11.7   0.0    1.4  1  Peptidase_S9     Prolyl oligopeptidase family
       0.11   12.4   0.1       0.17   11.7   0.1    1.3  1  Lipase_3         Lipase (class 3)
       0.19   10.6   0.0       0.27   10.1   0.0    1.1  1  Chlorophyllase2  Chlorophyllase enzyme
       0.22   11.3   0.0       0.36   10.6   0.0    1.2  1  Abhydrolase_5    Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4  31.7   1.3e-23   1.9e-20       1     219 [.      28     342 ..      28     344 .. 0.56

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 1.3e-23
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH.CHHHHHHHCCTT........TTSEEEEEETCHHHHHHH.HHHCC.. CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldled.ladlaalldelaa......gggpvvlvGHSlGGalala.aapla.l 87 
                    vll+HG  ss+  W   pL+++l++  +v+apDl+G+G++++++ d ++ l+d+a+ +++l +       g ++v+vGHSlGG +a++ +++++ +
     KIR63282.1  28 VLLVHGNCSSSAFWE--PLLRRLPDTLRVVAPDLRGYGDTETAAVDATRgLRDFADDVAALLDapglfaPGARPVVVGHSLGGGVAMRlLVDHPdR 121
                    89************9..*********9***********888888777777555544444444445559888889**************65555577 PP

                    .EEEEES-........................----TTT....S----TTHHHHHH....TT-C......CCCHCCHS-HSCCCCHHH........ CS
  Abhydrolase_6  88 vvgvlldp...............pp.......talpagl....laaalelllalla....llrl......lawlsreplprlfladed........ 139
                    v+g+ll++               +p       t+         ++++++l+++ ++       +       a++   ++p ++ +ded        
     KIR63282.1 122 VAGLLLSApvspygfggtrdldgTPttpdfagTG----GgtanGDFVARLAAGDRGadgpT--SprsvlrTAYV---ADPASLGDDEDllldslls 208
                    7778888835555555544444411333333322....12333333333333222222221..13212222333...2444777777766555444 PP

                    .C............CCCHCHCCCGHH.............................................HHCCHHCHTT.CCHHTT-TTGCEEE CS
  Abhydrolase_6 140 .a............daawrarlarla.............................................allaglgllp.aaawadlpvpllvl 176
                     a             ++w  + a+ +                                             a+l +lg+ p ++  +d+p++ +v 
     KIR63282.1 209 tAtgdgnypgtavdSPHWPGTAAGDRgvlnalapahfriaddlvavaakppvtwvrgdadvivsdtslfdlAYLGSLGAVPgWPGERDCPPQPMV- 303
                    41444434444445444555554444556655555555555555555555555555555555555544433333333322225555555555555. PP

                    CTT-CHHHHCHHCCCH.STTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 177 ggeDplvprllerlla.qagarlpvvlpgaGHlphleepdevae 219
                     g+ +   + l+r++a    ++  vvl g+GH+phle+p+e+++
     KIR63282.1 304 -GQTR---AVLDRYAAaGGAYHE-VVLLGCGHSPHLERPAEFVA 342
                    .4444...444555553344555.99*************66654 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.1     1e-18   1.5e-15       2     109 ..      27     133 ..      26     154 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 1e-18
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTT....SSEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgd....dkltlvGhSmGGmialayaae 93 
                    +++++hG + ss  w    l + L++   +v+++DlrG+g +++a      + g+ ++add+ ++lda g+     ++++vGhS+GG +a+ ++ +
     KIR63282.1  27 PVLLVHGNCSSSAFWEP--LLRRLPD-TLRVVAPDLRGYGDTETAAVD--ATRGLRDFADDVAALLDAPGLfapgARPVVVGHSLGGGVAMRLLVD 117
                    89***************..******9.*******************99..77788889999999999876433338889***************** PP

                    HGGGEEEEEEESECSS CS
  Abhydrolase_1  94 yperVkalvllgaidp 109
                    +p+rV++l l ++++p
     KIR63282.1 118 HPDRVAGLLLSAPVSP 133
                    **********999555 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   1.7e-18   2.6e-15       5     110 ..      26     131 ..      22     137 .. 0.93
   2 ?   -3.6   0.0       3.5   5.2e+03     190     206 ..     256     272 ..     246     275 .. 0.78

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 1.7e-18
  Hydrolase_4   5 avvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrg.hvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkv 101
                  a v+lvHG +++s   + l ++L +    v+a D rG+G +e + +   + + d+ dD+aa++++     p+++ +++GhS+GG +a+++l ++pd+v
   KIR63282.1  26 APVLLVHGNCSSSAFWEPLLRRLPDT-LRVVAPDLRGYGDTETAAVdATRGLRDFADDVAALLDAPGLFAPGARPVVVGHSLGGGVAMRLLVDHPDRV 122
                  569********************875.9**************7777356789********************************************** PP

  Hydrolase_4 102 aglilsaPa 110
                  agl lsaP+
   KIR63282.1 123 AGLLLSAPV 131
                  ********7 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.5
  Hydrolase_4 190 itlPllllhGeaDkvvd 206
                  ++ P+  + G+aD +v+
   KIR63282.1 256 AKPPVTWVRGDADVIVS 272
                  55699999999999997 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0     0.002       2.9       3      18 ..      24      39 ..      22      52 .. 0.87
   2 !    9.9   0.1   0.00037      0.56      94     111 ..     100     117 ..      94     134 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.002
       PGAP1  3 sGipVlFvpGnagsyk 18
                +G+pVl+v+Gn+ s  
  KIR63282.1 24 DGAPVLLVHGNCSSSA 39
                79**********9965 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00037
       PGAP1  94 iliGHSmGGivaraaltl 111
                 +++GHS+GG va  +l+ 
  KIR63282.1 100 VVVGHSLGGGVAMRLLVD 117
                 79**********555443 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   7.5e-07    0.0011      99     152 ..      80     133 ..      29     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 7.5e-07
                 HTHHHHHHHHHCSEECCC.EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-C CS
    Esterase  99 tqeLlplldanfrtapdg.ravaGqSmGGlgALilalkhpdrFgsvssfSpivnp 152
                 ++ ++ llda   +ap +  +v+G+S+GG +A+ l ++hpdr +    +S++v+p
  KIR63282.1  80 ADDVAALLDAPGLFAPGArPVVVGHSLGGGVAMRLLVDHPDRVAGL-LLSAPVSP 133
                 567788889998899998889*********************9554.44556666 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.7e-06      0.01      56      92 ..      98     133 ..      28     151 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.7e-06
                    TEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--SG CS
  Ser_hydrolase  56 kvvlvAHSlgclavlhaaelqlakkvagalLVapadv 92 
                    + v+v HSlg  ++++++ + ++++vag lL ap ++
     KIR63282.1  98 RPVVVGHSLGGGVAMRLL-VDHPDRVAGLLLSAPVSP 133
                    469***************.***************987 PP

>> FAM92  FAM92 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     3e-05     0.045      35      88 ..      35      88 ..      31      91 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3e-05
       FAM92 35 csifalvvrktaklrdkadelvkevkayaddeeineklcqGlksfadevaklqd 88
                cs+ a     + +l d +  ++ +++ y d+e+     ++Gl++fad+va l d
  KIR63282.1 35 CSSSAFWEPLLRRLPDTLRVVAPDLRGYGDTETAAVDATRGLRDFADDVAALLD 88
                777777777788999999********************************9977 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.1e-05      0.12       2      83 ..      27     114 ..      26     135 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.1e-05
                   EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST.SHHHCT...TCHHHHHHHHHHHHHH...H-SSSSEEEEEETHHHHHHHHH CS
  Thioesterase   2 pLflfppagGsasvfrslasklsdpvvevlavqlpgre.rdeppl...esieelaaeyaealrq...iqpegPyalfGhSlGgllAfev 83 
                   p+ l+++   s+++   l ++l+d+  +v+a  l+g++ ++++++   +++ + a+ +a+ l +     p    +++GhSlGg +A+++
    KIR63282.1  27 PVLLVHGNCSSSAFWEPLLRRLPDT-LRVVAPDLRGYGdTETAAVdatRGLRDFADDVAALLDApglFAPGARPVVVGHSLGGGVAMRL 114
                   6889999999**************8.999999999999744443311156777888888888763325666656799*********974 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.7e-05      0.13      23      99 ..      60     132 ..      52     155 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.7e-05
                   TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTT.S--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE-- CS
  Peptidase_S9  23 rGsggyGeafhdagkrklgqnefdDfiaaaealakeg.yvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvv 99 
                   rG   yG++ + a++   g ++f+D +aa+  l + g ++   r ++ G+S GG +++ +l ++pd+ ++++ ++pv+
    KIR63282.1  60 RG---YGDTETAAVDATRGLRDFADDVAAL--LDAPGlFAPGARPVVVGHSLGGGVAMRLLVDHPDRVAGLLLSAPVS 132
                   54...4455555555556666666654443..33355799999***************************99999986 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00011      0.17      64      80 ..      96     112 ..      67     140 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                 -EEEEEEEETHHHHHHH CS
    Lipase_3  64 eysivvtGHSLGgalAl 80 
                  ++ vv+GHSLGg++A+
  KIR63282.1  96 GARPVVVGHSLGGGVAM 112
                 56779**********96 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00018      0.27      20     126 ..      28     130 ..      22     139 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00018
  Chlorophyllase2  20 llflhGylllnslYsqlLkhiashgfivvapqlykvaeadakeiksaakvlnWlakgLesvlp.eevepdlsklalsgHSrGgktafalalgka 112
                      +l++hG +  + +++ lL+++      vvap l     ++++ +++++   +  a++++  l  +++ +   + +++gHS Gg +a+ l +++ 
       KIR63282.1  28 VLLVHGNCSSSAFWEPLLRRLPD-TLRVVAPDLRGYGDTETAAVDATRGLRDF-ADDVAALLDaPGLFAPGARPVVVGHSLGGGVAMRLLVDHP 119
                      5789****************986.57799****99988888999988887775.566666776699999999999***************9998 PP

  Chlorophyllase2 113 ktslkfsaligvdP 126
                      +    ++ l+   P
       KIR63282.1 120 D---RVAGLLLSAP 130
                      8...5555555455 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00024      0.36      60      88 ..     100     129 ..      93     135 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00024
  Abhydrolase_5  60 vvgGhslGGvvasrfaaee.ekiegvvfla 88 
                    vv GhslGG va r+  ++ +++ g+++ a
     KIR63282.1 100 VVVGHSLGGGVAMRLLVDHpDRVAGLLLSA 129
                    899***********9999967999998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       185  (0.0103185); expected 358.6 (0.02)
Passed bias filter:                      157  (0.00875676); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2663.24
//
Query:       KIR63283.1  [L=557]
Description: 3-hydroxybutyryl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-95  316.9  10.2    2.7e-61  206.6   0.5    3.1  3  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
    2.3e-62  207.6   0.2    4.2e-30  104.2   0.1    2.8  2  3HCDH            3-hydroxyacyl-CoA dehydrogenase, C-terminal 
    0.00013   22.5   0.6       0.23   12.1   0.1    2.8  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    0.00081   19.6   0.5    0.00081   19.6   0.5    2.7  3  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
     0.0088   15.4   1.8        0.3   10.4   0.1    2.4  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
  ------ inclusion threshold ------
      0.011   15.0   0.9      0.054   12.7   0.1    2.0  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      0.013   16.1   0.5      0.089   13.5   0.2    2.6  2  Methyltransf_11  Methyltransferase domain
       0.02   15.3   4.2        2.2    8.8   0.5    2.4  2  NAD_binding_7    Putative NAD(P)-binding
      0.055   14.2   0.1       0.35   11.7   0.0    2.2  2  Methyltransf_12  Methyltransferase domain
       0.14   12.4   0.2       0.14   12.4   0.2    2.2  2  TrkA_N           TrkA-N domain
       0.19   11.3   3.7       0.11   12.0   0.3    2.0  2  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
       0.83    9.5   7.8        1.3    8.9   0.3    3.0  2  Rossmann-like    Rossmann-like domain
        0.9    9.6   3.1        1.1    9.4   0.1    2.4  2  DUF5330          Family of unknown function (DUF5330)
       0.91    9.6   3.6         14    5.8   0.2    2.7  2  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
        1.5    9.0   3.9        2.8    8.2   0.4    2.6  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.6   0.5   2.3e-64   2.7e-61       2     179 ..       8     185 ..       7     186 .. 0.99
   2 !    9.9   2.6   0.00053      0.63       2      29 ..     316     343 ..     315     351 .. 0.89
   3 !  104.6   0.0   4.6e-33   5.5e-30      73     179 ..     349     455 ..     343     456 .. 0.97

  Alignments for each domain:
  == domain 1  score: 206.6 bits;  conditional E-value: 2.3e-64
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlviEavvEnlelKrkvfael 100
                 v+v+G GtmGagi +vfa++g++Vv v++se+al++++++++ s++++v++gkl e++++a+lar+ f+  l+++ ++dlv+Eav+E+l+lKr++fael
  KIR63283.1   8 VGVVGLGTMGAGIVEVFARNGIDVVAVEVSEAALDRGRANLTGSTDRAVARGKLAEADRDALLARVDFQVGLDALHSVDLVVEAVPERLDLKRRIFAEL 106
                 9************************************************************************************************** PP

                 HCCS-TTSEEEE--SSS-HHHHCCCSSSGGGEEEEEE-SSTTT--EEEEEE-TT--HHHHHHHHHHHHHTT-EEEEECS CS
     3HCDH_N 101 ekiakpdailasnTSslsiselaealkrperviglHFfnPpplmkLvEvvrgekTseetvatvvelakkigktpvvvkd 179
                 +++++p+aila+nTSsls++e++ a+ rp++v+g+HFfnP+p+mkLvEvvr+  T+ ++va+v +l++++gk+ v++ d
  KIR63283.1 107 DRVCRPEAILATNTSSLSVTEVSVATGRPQQVVGIHFFNPAPVMKLVEVVRTVVTAADVVADVEALCARLGKVGVTIGD 185
                 ***************************************************************************9876 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00053
                 EEEE--SCCHHHHHHHHHHTT-EEEEE- CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvd 29 
                 v+v+G+G   ag+ +vfa ag++Vv v 
  KIR63283.1 316 VGVVGSGATAAGLVEVFAGAGYDVVQVA 343
                 9***********************9876 PP

  == domain 3  score: 104.6 bits;  conditional E-value: 4.6e-33
                 HHHHHC-SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHCCCSSSGGGEEEEEE-SSTTT--EEEEEE-TT--HHHHHHHHHHHHHTT CS
     3HCDH_N  73 leeavdadlviEavvEnlelKrkvfaelekiakpdailasnTSslsiselaealkrperviglHFfnPpplmkLvEvvrgekTseetvatvvelakkig 171
                 l+ ++++dlv+Eav+E+l +K++++a l+ ++kp ++la++TSsl++ ++a a+ rp+ v+glHF  P+p  +LvE+v++ +T ee++at++++++ +g
  KIR63283.1 349 LDGLAEVDLVVEAVAEDLGVKKELLASLDGVCKPGVVLATTTSSLPVIDIAMATGRPADVVGLHFSGPVPARPLVEIVQTIRTGEEATATARAVCATLG 447
                 566789********************************************************************************************* PP

                 -EEEEECS CS
     3HCDH_N 172 ktpvvvkd 179
                 +t+vv+ d
  KIR63283.1 448 RTAVVCGD 455
                 ******87 PP

>> 3HCDH  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.1   3.5e-33   4.2e-30       1      97 []     188     285 ..     188     285 .. 0.95
   2 !  100.7   0.0   4.5e-32   5.4e-29       1      96 [.     458     553 ..     458     554 .. 0.99

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 3.5e-33
                 TTTHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHTTTH.GGHH-HHHHHHHHTT--BGGGTBSSSBC CS
       3HCDH   1 GFvvnRvlapllneavrlveegvaspediDaamrlglGlpmGpfelldlvgldvakkilevlaeelger.ayapsplleklveagrlgrktgkgfyky 97 
                 GF++n +l+ +ln av+++e  +as ediDaam+lg GlpmGp++lldl+gld+a+ il++++++ g + ++ap pl++++v ag lgrk+g+gfy+y
  KIR63283.1 188 GFIANALLFGYLNHAVAMFESRYASREDIDAAMKLGGGLPMGPLALLDLIGLDTAYEILDTMYRRGGRDrRHAPVPLVRQMVTAGLLGRKSGQGFYTY 285
                 9***********************************************************7777755555**************************98 PP

  == domain 2  score: 100.7 bits;  conditional E-value: 4.5e-32
                 TTTHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHTTTHGGHH-HHHHHHHHTT--BGGGTBSSSB CS
       3HCDH   1 GFvvnRvlapllneavrlveegvaspediDaamrlglGlpmGpfelldlvgldvakkilevlaeelgerayapsplleklveagrlgrktgkgfyk 96 
                 GFvv+ +l p+ln av+++e+g+a++ diD am+lg+G+p+Gpfelld vgldva++  ++l++el ++ +ap+plle+lv ag lgr++g+gf +
  KIR63283.1 458 GFVVDALLLPYLNDAVKMLEAGYATVDDIDHAMKLGCGYPTGPFELLDAVGLDVALASQRALYRELRDPGFAPAPLLEHLVTAGYLGREAGRGFRD 553
                 9********************************************************************************************976 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   0.00019      0.23       2      37 ..       8      39 ..       7      93 .. 0.78
   2 !    7.9   0.0    0.0038       4.5       1      43 [.     315     353 ..     315     366 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00019
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCC CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpe 37
                   +g++G G mg+++++ ++++g    ++v a + ++ 
     KIR63283.1  8 VGVVGLGTMGAGIVEVFARNG---IDVV-AVEVSEA 39
                   89*******************...9998.5344333 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0038
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHH CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeela 43 
                    ++g++G+G  +++l++ ++ ag   +++v +  +  e ++ la
     KIR63283.1 315 RVGVVGSGATAAGLVEVFAGAG---YDVVQV-APGAEPLDGLA 353
                    69********************...999955.77777666665 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.5   6.8e-07   0.00081       2      43 ..       8      71 ..       7     149 .. 0.66
   2 ?   -1.2   0.1       1.7     2e+03      46      72 ..     143     169 ..     109     184 .. 0.68
   3 ?   -0.5   0.0       1.1   1.3e+03       2      42 ..     316     356 ..     315     394 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6.8e-07
                   EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT......................E CS
  NAD_binding_2  2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg......................a 43
                   +g++GlG+MG+ +++ ++++g++v++++++++++++  a+                       a
     KIR63283.1  8 VGVVGLGTMGAGIVEVFARNGIDVVAVEVSEAALDRGRANLtgstdravargklaeadrdallA 71
                   8*****************************9999887666444555544444444444444442 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.7
                    -SSHHHHHHHCSEEEE-SSSHHHHHHH CS
  NAD_binding_2  46 aesieelvasldvvitmvkagkavdev 72 
                    + +++ +++ ++vv t+v+a + v +v
     KIR63283.1 143 FFNPAPVMKLVEVVRTVVTAADVVADV 169
                    456666777778888888887777665 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.1
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg 42 
                    +g++G G   + +++ ++ agy+v+ +   +e ++ l++  
     KIR63283.1 316 VGVVGSGATAAGLVEVFAGAGYDVVQVAPGAEPLDGLAEVD 356
                    78888888888888888888888887776666666666554 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00025       0.3      38      70 ..       7      39 ..       4      70 .. 0.88
   2 ?    3.9   0.2     0.025        30      38      73 ..     315     350 ..     309     367 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00025
                  EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlkafgmkviaydrskk 70
                   vG++GlG +G  + ++++  g++v+a+++s+ 
    KIR63283.1  7 SVGVVGLGTMGAGIVEVFARNGIDVVAVEVSEA 39
                  69**************************99865 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.025
                   EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C  38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkee 73 
                   +vG++G G+ +  + +++++ g +v+ + +  ++ +
    KIR63283.1 315 RVGVVGSGATAAGLVEVFAGAGYDVVQVAPGAEPLD 350
                   79***********************99888766555 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.21   2.6e+02       2      31 ..       7      41 ..       6     154 .. 0.67
   2 ?   12.7   0.1   4.5e-05     0.054     142     244 ..     307     411 ..     277     426 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.21
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE.....T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve.....l 31
                 +v v+G G  G    +  a++g++v+ ve     l
   KIR63283.1  7 SVGVVGLGTMGAGIVEVFARNGIDVVAVEvseaaL 41
                 57799999999999999999999999998644442 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 4.5e-05
                  T......SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE CS
                  x......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 142 p......krivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvv 233
                         +r+ vvG+G+++  l  ++a +g++v+ v  + ++l +l  e+   +e++ e+ Gv+  l +s   + + g    v  ++ +++++  + +
   KIR63283.1 307 GdgarpvARVGVVGSGATAAGLVEVFAGAGYDVVQVAPGAEPLDGL-AEVDLVVEAVAEDLGVKKELLASLDGVCKPGV---VLATTTSSLPVIDIAM 400
                  0444557899************************9***99999655.58999*******************99999998...8888888899999999 PP

                  -S-EEES-HHC CS
                  xxxxxxxxxxx RF
  Pyr_redox_2 234 avGvrpstell 244
                  a+G+ ++  +l
   KIR63283.1 401 ATGRPADVVGL 411
                  99998877665 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   7.4e-05     0.089       7      95 ..      17     117 ..      11     118 .. 0.63
   2 ?   -2.5   0.0       6.8   8.1e+03      64      93 ..     357     385 ..     346     387 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.4e-05
                      TSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-............EEEETTEECC.CTSS-T.T-EEEEEEES-CCC-CCHHHHHHHHHH CS
  Methyltransf_11   7 tGrlaealakrgarvvgvDlskemlklakekaseegl............kvefvvadae.klpfed.nsfDlvvssevlhhvedpekalkeiaR 86 
                      +  ++e +a++g +vv+v++s+++l++ +++  ++              + + + a++  ++ +   +s+Dlvv   v + ++  +++++e+ R
       KIR63283.1  17 GAGIVEVFARNGIDVVAVEVSEAALDRGRANLTGSTDravargklaeadR-DALLARVDfQVGLDAlHSVDLVV-EAVPERLDLKRRIFAELDR 108
                      444567888999*************9988888887765455332222211.11222222223333334555553.33455556999******** PP

                      HEEEEEEEE CS
  Methyltransf_11  87 vLkpgGllv 95 
                      v++p+ +l+
       KIR63283.1 109 VCRPEAILA 117
                      ****99875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.8
                      EEEEES-CCC-CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11  64 lvvssevlhhvedpekalkeiaRvLkpgGl 93 
                      lvv   v + +   +++l+ +  v+kpg +
       KIR63283.1 357 LVV-EAVAEDLGVKKELLASLDGVCKPGVV 385
                      443.44666666678888899999999865 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.2    0.0048       5.7       9      80 ..       7     104 ..       4     125 .. 0.63
   2 ?    8.8   0.5    0.0018       2.2       9      55 ..     315     362 ..     313     402 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0048
  NAD_binding_7   9 kvlvvGgGevAarkvrklleagakvtvvapevkeele.................elvklaeeelekd................legadlviaatdd 71 
                    +v vvG G+++a  v+ ++++g +v+ v     ++l+                 +l ++       d                l  +dlv+ a+++
     KIR63283.1   7 SVGVVGLGTMGAGIVEVFARNGIDVVAVEVSE-AALDrgranltgstdravargKLAEA-------DrdallarvdfqvgldaLHSVDLVVEAVPE 94 
                    578******************99988765542.23335555555554444433322222.......233333334455555557778888877765 PP

  NAD_binding_7  72 r.elneriae 80 
                    r +l++ri +
     KIR63283.1  95 RlDLKRRIFA 104
                    4256666655 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0018
  NAD_binding_7   9 kvlvvGgGevAarkvrklleagakvtvvapevkeeleelvk..laeeel 55 
                    +v vvG G  Aa  v+ ++ ag +v+ vap  +e l++l +  l  e +
     KIR63283.1 315 RVGVVGSGATAAGLVEVFAGAGYDVVQVAPG-AEPLDGLAEvdLVVEAV 362
                    789***************************9.55666444422333333 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00029      0.35       8      97 ..      14     114 ..      11     116 .. 0.72
   2 ?   -0.4   0.0       1.7     2e+03      65      98 ..     353     385 ..     332     386 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00029
  Methyltransf_12   8 Gsllrallekl..pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg..........ssfDlvvasnvlhhlkdirevldni 89 
                      G++ + + e +   +i++++v++s++a+++ ++ l    ++ +++ +l + d + l  +          +s+Dlvv   v + l+ +r++++++
       KIR63283.1  14 GTMGAGIVEVFarNGIDVVAVEVSEAALDRGRANLTGSTDRAVARGKLAEADRDALLARvdfqvgldalHSVDLVVE-AVPERLDLKRRIFAEL 106
                      44444444444445***********************************9998877775777777777667776664.3445556666777777 PP

  Methyltransf_12  90 rklLkpgG 97 
                       ++++p++
       KIR63283.1 107 DRVCRPEA 114
                      77777765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.7
  Methyltransf_12  65 ssfDlvvasnvlhhlkdirevldnirklLkpgGr 98 
                      + +Dlvv   v + l  ++e+l+++  ++kpg +
       KIR63283.1 353 AEVDLVVE-AVAEDLGVKKELLASLDGVCKPGVV 385
                      56777765.4778889999999999999999976 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   0.00012      0.14       3      40 ..      10      47 ..       8      65 .. 0.90
   2 ?   -0.9   0.2       1.5   1.8e+03       3      48 ..     318     365 ..     316     396 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
                EES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHT CS
      TrkA_N  3 iiGlGrvGrslaeeLseggkdvvvidkdeerveelree 40
                ++GlG++G  ++e + ++g+dvv+++ +e+++++ r++
  KIR63283.1 10 VVGLGTMGAGIVEVFARNGIDVVAVEVSEAALDRGRAN 47
                9****************9999********999887665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
                 EES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTT..SEEEES- CS
      TrkA_N   3 iiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeg..levvvgd 48 
                 ++G G ++  l+e +   g+ dvv +    e ++ l+e    +e+v  d
  KIR63283.1 318 VVGSGATAAGLVEVFAGaGY-DVVQVAPGAEPLDGLAEVDlvVEAVAED 365
                 89999999999999999666.6999988888888887666445555544 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   9.5e-05      0.11       3      38 ..       8      43 ..       6      58 .. 0.92
   2 ?   -0.4   0.2       0.6   7.2e+02       2      30 ..     315     343 ..     314     366 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.5e-05
                    EEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHH CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvDideekvdk 38
                    + v+GlG +G+    v+a+ g++v+ v ++e++ d 
      KIR63283.1  8 VGVVGLGTMGAGIVEVFARNGIDVVAVEVSEAALDR 43
                    89****************************998775 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.6
                     EEEEE--STTHHHHHHHHHHCTSEEEEE- CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvD 30 
                     ++ v+G+G   +    v+a +g +v+ v 
      KIR63283.1 315 RVGVVGSGATAAGLVEVFAGAGYDVVQVA 343
                     899******9999999*********9985 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.3    0.0011       1.3      12      56 ..       7      50 ..       2      76 .. 0.84
   2 ?    2.8   1.7     0.083        99      10      41 ..     313     344 ..     299     374 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
  Rossmann-like 12 svGiisaGrvGtalgaaleraghvvvgisaisaasreraerrlPd 56
                   svG+++ G +G+ + + ++r g  vv++  +s+a+ +r ++ l +
     KIR63283.1  7 SVGVVGLGTMGAGIVEVFARNGIDVVAVE-VSEAALDRGRANLTG 50
                   8**************************97.677777777777655 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.083
  Rossmann-like  10 rlsvGiisaGrvGtalgaaleraghvvvgisa 41 
                       vG++++G   + l + +++ag+ vv ++ 
     KIR63283.1 313 VARVGVVGSGATAAGLVEVFAGAGYDVVQVAP 344
                    4579***********************99875 PP

>> DUF5330  Family of unknown function (DUF5330)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00088       1.1       3      26 ..     153     176 ..     151     187 .. 0.89
   2 ?   -0.7   0.8       1.3   1.5e+03      28      44 ..     441     457 ..     429     458 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00088
     DUF5330   3 vsaseAfsAAsaavsDvsgfCerk 26 
                 v+++ ++  A+++v+Dv+++C r 
  KIR63283.1 153 VEVVRTVVTAADVVADVEALCARL 176
                 78999****************995 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.3
     DUF5330  28 dvCetGkealtaigeRA 44 
                 +vC+t ++++ + g RA
  KIR63283.1 441 AVCATLGRTAVVCGDRA 457
                 47777777777777777 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2     0.011        14      14      41 ..       7      34 ..       3      40 .. 0.90
   2 ?    3.8   0.3     0.046        55      13      42 ..     314     343 ..     309     402 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.011
                  EEEEES-SHHHHHHHHHHHCCT-CEEEE CS
  Shikimate_DH 14 kvlliGaGemaelvakhLlakgvkkvvv 41
                   v ++G G m+  +++ ++++g++ v+v
    KIR63283.1  7 SVGVVGLGTMGAGIVEVFARNGIDVVAV 34
                  689********************98776 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.046
                   -EEEEES-SHHHHHHHHHHHCCT-CEEEEE CS
  Shikimate_DH  13 kkvlliGaGemaelvakhLlakgvkkvvva 42 
                   ++v ++G G +a  +++ ++ +g++ v va
    KIR63283.1 314 ARVGVVGSGATAAGLVEVFAGAGYDVVQVA 343
                   7899*******************9988886 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.4    0.0024       2.8       1      73 [.       8      76 ..       8      98 .. 0.77
   2 ?    1.1   0.2      0.36   4.3e+02       1      93 [.     316     403 ..     316     406 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0024
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEE CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlv 73
                     v ++G G +G +++e+ ar++ +  +++ ++ s++ l++  a+++g++  a+a  +  +++  +all+  d+ 
       KIR63283.1  8 VGVVGLGTMGAGIVEVFARNG-I--DVVAVEVSEAALDRGRANLTGSTDRAVARGKLAEAD-RDALLARVDFQ 76
                     679****************98.6..699999999999999988866666666655555555.66666666654 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.36
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS.SEEEE-SSGGGHHHHHHHHHHHT CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg.dlvvnlsppissldvlkaCietg 93 
                      v ++G+G+++ +++e+ a  + +  +++ + +  e l+ la+      +ea+a d   ++++La+l  +  +  v l++ +ssl+v++++++tg
       KIR63283.1 316 VGVVGSGATAAGLVEVFAGAG-Y--DVVQVAPGAEPLDGLAE--VDLVVEAVAEDLGVKKELLASL-DGVcKPGVVLATTTSSLPVIDIAMATG 403
                      678999999999999988876.5..46666666666666665..4555555555555555533333.333344455788888888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4055.90
//
Query:       KIR63284.1  [L=108]
Description: ATP/GTP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 784.18
//
Query:       KIR63285.1  [L=269]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-05   23.6   9.2    9.8e-05   23.1   9.2    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0038   16.9   0.0     0.0053   16.4   0.0    1.2  1  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   9.2   1.1e-08   9.8e-05       5     164 ..      53     236 ..      44     262 .. 0.54

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.1e-08
                    --GC.....GC..HHHHHHHHCCTCEEEEE--TTS....TS-GGCS.......--HHHCHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC. CS
  Abhydrolase_6   5 HGagssassWl..vapLaallaagvhvlapDlpGh....Grsdppp.......ldledladlaalldelaagggpvvlvGHSlGGalalaaaplal 87 
                    HG+ +++++++  + +L al+   v  l +  +G+    G+s+++        +d++++ ++a++++       +v+lvG+S+G+ l l ++  + 
     KIR63285.1  53 HGGMMDSHVFRkaAWRLPALADLAV--LRFNTRGTssvrGTSEGAFdnavgerFDVAAAIEYAEFAELP-----NVWLVGWSFGTDLTLKYGCDPA 141
                    5666778888445779988888888..********7776644333333333336666667777777777.....5*********988889666667 PP

                    .EE.EEES-..----TTT.S----TTHHHHHHTT-C.....CCCHCCH..................S-HSCCCCHHHCCCCHCHCCCGHHHHCCHH CS
  Abhydrolase_6  88 vvg.vlldppptalpagl.laaalelllallallrl.....lawlsre..................plprlfladedadaawrarlarlaallagl 158
                    v+g +ll+p     p+++ ++  le++++ +++l++     + +l+ +                   + +l+++d +  +   + ++r+ + ++ +
     KIR63285.1 142 VAGaILLSP-----PLRFsAPSDLEHWAQEGKPLTAlvpefDDYLRPDearrrfaavpqaevvgvpGAKHLWVGDAE--TVLDEIVRRVNPAAPLP 230
                    7888*****.....333334555555555555444444223222222211111111111123332222224444333..55555555555555544 PP

                    CHTTCC CS
  Abhydrolase_6 159 gllpaa 164
                     +++++
     KIR63285.1 231 LPRTWD 236
                    433333 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.9e-07    0.0053       7     147 ..      53     197 ..      42     207 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.9e-07
                    -STTTCGGGGTTGHH.HHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHH.....SHHHHHHHHHHH.HHHCTTSSEEEEEETHHHHHHHHHHHHHG CS
  Abhydrolase_1   7 hGlpgssdvwaergl.apaLakdgfdvillDlrGvgySspapacinddy.....gtasvaddldri.ldalgddkltlvGhSmGGmialayaaeyp 95 
                    hG+ + s+v++++++  paLa  +  v+ ++ rG  + +  ++     +     + ++va+ ++++  + l   +++lvG+S+G+ + l y  +  
     KIR63285.1  53 HGGMMDSHVFRKAAWrLPALA--DLAVLRFNTRGTSSVRGTSE---GAFdnavgERFDVAAAIEYAeFAEL--PNVWLVGWSFGTDLTLKYGCD-- 139
                    777779999999776345555..79999999999877666666...4443344444468888887756665..5799****************5.. PP

                    GGEEEEEEESE......CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCC CS
  Abhydrolase_1  96 erVkalvllga......idpaaslieaqrqqaksfpdffdgyaadcarnpagpllade 147
                      V++ +ll++      +++  ++ ++ +   + +p+f d  ++d+ar +++   + e
     KIR63285.1 140 PAVAGAILLSPplrfsaPSDLEHWAQEGKPLTALVPEFDDYLRPDEARRRFAAVPQAE 197
                    88*********99988888888888888888999999999999999988877666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       172  (0.0095934); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1798.06
//
Query:       KIR63286.1  [L=706]
Description: hypothetical protein TK50_20775 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3361  (0.187462); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                       233  (0.0129957); expected 17.9 (0.001)
Passed Fwd filter:                        98  (0.005466); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.63u 0.41s 00:00:03.04 Elapsed: 00:00:00.76
# Mc/sec: 2817.21
//
Query:       KIR63287.1  [L=417]
Description: cell division protein DivIVA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-05   25.2   1.1    1.4e-05   25.2   1.1    6.0  6  DivIVA           DivIVA protein
  ------ inclusion threshold ------
       0.58   10.1   2.2        1.8    8.5   0.2    2.8  3  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2


Domain annotation for each model (and alignments):
>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   1.1   1.5e-09   1.4e-05      10      77 ..      20      87 ..      17      95 .. 0.92
   2 !   13.5   7.4   6.5e-06     0.058      66     117 ..     102     153 ..      96     156 .. 0.90
   3 !    7.8   7.2   0.00037       3.3      71     117 ..     151     197 ..     150     211 .. 0.72
   4 ?   -5.0  14.4         2   1.8e+04      57     117 ..     199     259 ..     194     275 .. 0.68
   5 ?   -2.8  11.5      0.68   6.1e+03      79     126 ..     265     312 ..     260     316 .. 0.84
   6 ?    2.3  21.6     0.018   1.6e+02      45     128 ..     292     376 ..     279     381 .. 0.55

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.5e-09
                ---EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA 10 eFkkklrGYdedeVdeFLdqvakdyeallkeneelkekvkeleeklkeykeleetLkktlvvaqetae 77
                 F+ +lrGY+  +Vd+F+  ++  + +  + ++e ++++++++++l + ++++++L++ l  + +  e
  KIR63287.1 20 DFTVGLRGYNVGQVDDFIGRLTAALTQSEQARAEAEQRMNDAQRRLRQAEQRQSALEQKLAETNKQLE 87
                6999******************************************************9987766555 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 6.5e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  66 kktlvvaqetaeevkanakkeaeliikeAekkaekiveeaeeeakkiaeeie 117
                 ++ l +a+e a++ +++ak+e+e i+++A+ +a++i ++a+ ea+ +++  e
  KIR63287.1 102 EQILRLAEEQANDHRNEAKRESEGILSAARLEAREITDKARAEAAAMKATAE 153
                 566779*************************************999987765 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00037
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  71 vaqetaeevkanakkeaeliikeAekkaekiveeaeeeakkiaeeie 117
                 +a++ a  v+++a++ea  +  +A+ +a+++ ++ae+e+k++++ ++
  KIR63287.1 151 TAEREAGSVRTAAEREAAEVRVQARREADTLRADAERETKQLRTVTA 197
                 57788888888888888888888888888888888888888776554 PP

  == domain 4  score: -5.0 bits;  conditional E-value: 2
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  57 eykeleetLkktlvvaqetaeevkanakkeaeliikeAekkaekiveeaeeeakkiaeeie 117
                 e +el++t+++ + +   tae+  ++++++a    +e +++a+k++ +a+++ +k  + +e
  KIR63287.1 199 EVAELKSTVEREVATLRATAEREITQQRAKAAREAEEKRAEATKLLTDARDKRDKDLQALE 259
                 5667788888888888888888888888888888888888888888888877766444333 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 0.68
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  79 vkanakkeaeliikeAekkaekiveeaeeeakkiaeeieelkrqarlf 126
                  +++a++e +   +++ ++ +k+v eae++a+ ++e+ +e++++a++ 
  KIR63287.1 265 RREKAEREESERHAAQVAQTQKLVGEAEQRARAAQERAKEIEQRAEAR 312
                 56788888888888889999999**************99999988765 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.018
                 HHHHHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  45 kekvkeleeklkeykeleetLkktlvvaqetaeevkanakkeaeliikeAekkaekive....eaeeeakkiaeeieelkrqarlfrq 128
                 +++ ++++e+ ke   +e+  +   v  ++ta+++ ++ak+ +e +++eA+++a++++     ea   ++ +++e+e+l rq+++  +
  KIR63287.1 292 EQRARAAQERAKE---IEQRAEARRVESERTANDTVEKAKALSEKTLNEAKAEAKRLLTeartEADLTTQAARREVEDLTRQKDAVTS 376
                 3333333333333...333333355677777777777777777777777777777777733333344446667777777777766554 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2     0.098   8.8e+02      15      37 ..      47      69 ..      41      72 .. 0.84
   2 ?    8.5   0.2    0.0002       1.8      16      46 ..      69      99 ..      61     101 .. 0.92
   3 ?   -2.8   0.0      0.67     6e+03      25      36 ..     199     210 ..     194     217 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.098
  HU-CCDC81_bac_2 15 yeeAlqkiekeveelkqeLeeeg 37
                      e+A+ + e+ +++ +++L + +
       KIR63287.1 47 SEQARAEAEQRMNDAQRRLRQAE 69
                     68999999999999999999876 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0002
  HU-CCDC81_bac_2 16 eeAlqkiekeveelkqeLeeegrveleniGe 46
                     e+ ++++e+  +e +++Lee+ r +l+++G+
       KIR63287.1 69 EQRQSALEQKLAETNKQLEENSRPTLSGLGT 99
                     667899************************7 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.67
  HU-CCDC81_bac_2  25 eveelkqeLeee 36 
                      ev+elk++ e+e
       KIR63287.1 199 EVAELKSTVERE 210
                      555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3469  (0.193485); expected 358.6 (0.02)
Passed bias filter:                      652  (0.0363657); expected 358.6 (0.02)
Passed Vit filter:                       187  (0.01043); expected 17.9 (0.001)
Passed Fwd filter:                        93  (0.00518713); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.02u 0.41s 00:00:02.43 Elapsed: 00:00:00.70
# Mc/sec: 1797.86
//
Query:       KIR63288.1  [L=156]
Description: glyoxalase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-21   76.3   0.0    3.3e-21   75.6   0.0    1.3  1  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
      9e-18   64.7   0.0    1.1e-17   64.4   0.0    1.1  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    3.7e-09   36.9   0.1    6.2e-09   36.2   0.1    1.4  1  Glyoxalase_3  Glyoxalase-like domain
  ------ inclusion threshold ------
      0.065   14.0   0.0       0.11   13.3   0.0    1.4  1  Glyoxalase_6  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0   7.3e-25   3.3e-21       1     109 []      23     137 ..      23     137 .. 0.94

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 7.3e-25
                   EEEEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETT..EEEEEEEESSTT....-THHHTS-EEEEEEEEES-HHHHHHHHCTTTE CS
  Glyoxalase_4   1 dQigivVeDleaavarfsallGvgpwqryrdepqevdlafallgsgs..vqieLieplegp....eflaehgeglhhlaywvddldaavarleeqGf 91 
                   d++gi+V Dl+aa++++++++G++   + ++++q+v+ a++++g +     ++L +pl  +    +fl++ g+g++++ay v d+daa+a+l+e+G+
    KIR63288.1  23 DHVGIAVADLDAAIDFYQRTFGMRCVHTETNTEQGVREAMLTVGPTAegGCVQLLAPLTPEstiaKFLDRSGPGVQQVAYTVADIDAACAALRERGL 119
                   6****************************************999987887899******99667777777*************************** PP

                   EEEEEEE-GGGTT-EEEE CS
  Glyoxalase_4  92 evvqkgvragaagrrfay 109
                   +++++ +r g+a+ r+ +
    KIR63288.1 120 RLLFETPRRGTADSRINF 137
                   ***********9999977 PP

>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   2.5e-21   1.1e-17       1     128 []      21     150 ..      21     150 .. 0.89

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 2.5e-21
                 EEEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEEST..EEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHT CS
  Glyoxalase   1 gidhvallvgdleksldFYtkvLGfklvkktdnteet..eglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkea 97 
                 +idhv ++v+dl++++dFY++ +G++ v  + nte +  e +     +a+gg+++l+   +p++  +++  +  ++ +v+ +a +v d+++a+  l+e+
  KIR63288.1  21 RIDHVGIAVADLDAAIDFYQRTFGMRCVHTETNTEQGvrEAMLTVGPTAEGGCVQLLAPLTPESTIAKF--LDRSGPGVQQVAYTVADIDAACAALRER 117
                 69******************************96666669999999999********999999999999..5558************************ PP

                 TGEEEEEEECHHCTEEEEE..EEEETTSEEEEE CS
  Glyoxalase  98 gvkvvaepgrhyfgalysf..yfrDpdGillei 128
                 g++  +e  r+++ ++ +   + +D +G+l+e+
  KIR63288.1 118 GLRLLFETPRRGTADSRINfvHPKDAGGVLVEL 150
                 *****998887776655444699********96 PP

>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.4e-12   6.2e-09       1     114 [.      22     131 ..      22     154 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.4e-12
  Glyoxalase_3   1 lDHvvlavpdleeaaarfarrlGftvtpggehpglgtaNalvmfgd....gYlEllav.dpeapaperprlfgldrlakgeglhtlalrtddidata 92 
                   +DHv++av dl++a++ ++r+ G++ +     ++ g + a++  g     g + lla+  pe   +     f ldr  +g+g+ ++a +++dida+ 
    KIR63288.1  22 IDHVGIAVADLDAAIDFYQRTFGMRCVHTETNTEQGVREAMLTVGPtaegGCVQLLAPlTPESTIA----KF-LDR--SGPGVQQVAYTVADIDAAC 111
                   7*******************************999****999986334436******636666653....34.577..79***************** PP

  Glyoxalase_3  93 arlraaGvd...eagrrvrpdggdl 114
                   a+lr++G+    e     +p +g++
    KIR63288.1 112 AALRERGLRllfE-----TPRRGTA 131
                   *******865432.....4444432 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.4e-05      0.11       3      84 ..      26     122 ..      24     145 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.4e-05
  Glyoxalase_6   3 vldaadpaalaaFwaaalgweveree.........aaledpegvgpaaedaatllfqrvpe........................paknrvHldlav 66 
                    +++ad +a+++F+++ +g++ +++e         a                 l ++++ e                        p      +  +v
    KIR63288.1  26 GIAVADLDAAIDFYQRTFGMRCVHTEtnteqgvreA----------------MLTVGPTAEggcvqllapltpestiakfldrsgP--GVQQVAYTV 104
                   57899********************96666543320................3333333333333333333334788887777442..335567777 PP

  Glyoxalase_6  67 edldaevarlvalGArvl 84 
                   +d+da++a+l + G r l
    KIR63288.1 105 ADIDAACAALRERGLRLL 122
                   889999988888886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 968.40
//
Query:       KIR63289.1  [L=398]
Description: acetyl-CoA acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     6e-100  333.9   0.7   7.8e-100  333.5   0.7    1.1  1  Thiolase_N     Thiolase, N-terminal domain
    9.6e-43  144.7   1.8    4.6e-42  142.5   1.4    2.1  2  Thiolase_C     Thiolase, C-terminal domain
    5.3e-07   29.5   0.9    6.6e-06   25.9   0.3    2.7  2  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
     0.0011   18.7   0.5       0.25   11.2   0.0    2.4  2  ACP_syn_III    3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas
     0.0031   16.3   0.1     0.0073   15.0   0.1    1.6  1  SpoVAD         Stage V sporulation protein AD (SpoVAD)


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.5   0.7  2.2e-103  7.8e-100       2     259 ..       4     261 ..       3     262 .. 0.99

  Alignments for each domain:
  == domain 1  score: 333.5 bits;  conditional E-value: 2.2e-103
                 EEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHH CS
  Thiolase_N   2 vivsaartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsia 100
                 vivs+artp+g+  g lkdlsa++L+ +a+ka+le+agv+pe+v++vi+G+vlqag gq++arqaa++agip +vpa t+nkvc Sgl+a+ala q i+
  KIR63289.1   4 VIVSGARTPMGRLLGNLKDLSATKLGGIAIKAALERAGVPPEQVQYVIMGQVLQAGTGQIPARQAAVEAGIPMSVPALTINKVCLSGLDAIALADQLIR 102
                 8************************************************************************************************** PP

                 TTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTTBE- CS
  Thiolase_N 101 ageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkdeivP 199
                 age+dvvvagG+Esm+nap+      r+g+k+gd ++kd++  dgl+da + + mG ++e+  ++++i+R eqd+fA++shq+aaaaqk+g+F+dei P
  KIR63289.1 103 AGEFDVVVAGGMESMTNAPHLLL-GQRAGYKYGDVTIKDHMALDGLTDAWDCCSMGESTERHGARHGITRAEQDAFAAASHQRAAAAQKNGHFADEITP 200
                 **********************8.88************************************************************************* PP

                 EEEEESSSE.EEE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 200 vkvkgkkgk.ktvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmse 259
                 v ++++kg+  ++++de+ir+++t+e+L +l+paF ++Gt+tAg as+isDGaaav++ms+
  KIR63289.1 201 VIIPQRKGDpVVISEDEGIRPDTTVESLGRLRPAFTSDGTITAGSASPISDGAAAVVVMSK 261
                 *********99************************************************97 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.19   6.9e+02      26      45 ..      31      50 ..      26      90 .. 0.88
   2 !  142.5   1.4   1.3e-45   4.6e-42       2     122 ..     270     390 ..     269     391 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.19
                HHHHHHHHHHT--GGGESEE CS
  Thiolase_C 26 yaikkvlkkagltvedidlf 45
                 aik++l++ag+  e+++++
  KIR63289.1 31 IAIKAALERAGVPPEQVQYV 50
                58999999999999988765 PP

  == domain 2  score: 142.5 bits;  conditional E-value: 1.3e-45
                 --SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHHC CS
  Thiolase_C   2 kplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselkke 100
                 ++la+i ++ +v+ +++ l  +P +ai+++l k gl ved+dl+EinEAFaa+ ++++++l++  +kvNvnGGaialGHP+G+sGaR+v tl+ el+++
  KIR63289.1 270 TWLAEIGAHGNVAGPDNSLHSQPSNAISHALRKGGLGVEDLDLVEINEAFAAVGIQSMRDLGIGDDKVNVNGGAIALGHPIGMSGARLVLTLAMELRRR 368
                 789************************************************************************************************ PP

                 TTSEEEEEEEETTTEEEEEEEE CS
  Thiolase_C 101 ggklgvaalCigggqgvalvie 122
                 gg +g aalC gggqg+al+i+
  KIR63289.1 369 GGGTGAAALCGGGGQGDALIIH 390
                 *******************996 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.3   1.8e-09   6.6e-06     167     218 ..      79     130 ..      24     147 .. 0.90
   2 ?   -2.1   0.0      0.66   2.4e+03     238     253 .]     249     264 ..     226     264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.8e-09
                    SEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SHHHHHHHHHTT CS
  ketoacyl-synt 167 psvtvdtACsSslvavhaavqslrsgeadvalaGGvellltpeavagfsaag 218
                    p++t+   C S+l a+++a q +r+ge dv++aGG+e ++++  + + ++ag
     KIR63289.1  79 PALTINKVCLSGLDAIALADQLIRAGEFDVVVAGGMESMTNAPHLLLGQRAG 130
                    88999999*******************************9988877777765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.66
                    BB-EEEEEEEEECHHH CS
  ketoacyl-synt 238 lGEGvGavvLkrleda 253
                    +++G++avv++++++a
     KIR63289.1 249 ISDGAAAVVVMSKAKA 264
                    6899999999988776 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0     7e-05      0.25       3      35 ..      83     115 ..      81     122 .. 0.83
   2 !    5.3   0.1    0.0049        18      52      66 ..     249     263 ..     241     274 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7e-05
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEE CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigae 35 
                  +n++C + + a+++Ad+li++g++  v+  g e
   KIR63289.1  83 INKVCLSGLDAIALADQLIRAGEFDVVVAGGME 115
                  799*******************99877655555 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0049
                  B-EEEEEEEEEEESS CS
  ACP_syn_III  52 fGDGAgAvvleasee 66 
                   +DGA+Avv+  + +
   KIR63289.1 249 ISDGAAAVVVMSKAK 263
                  68********98743 PP

>> SpoVAD  Stage V sporulation protein AD (SpoVAD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1     2e-06    0.0073      53     131 ..      27     112 ..      22     121 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2e-06
                 HHHHHHHHHHHHHTT--GGG-SEEEEEESSG...GGHHHHHHHHH....H---EEEB--GGGHHHHHHHHHHHHHHTTS-SEEEEE CS
      SpoVAD  53 klleeavkkalkkanlkkedidfllaGDLln...qlisssfaare....lkiPflglygaCstsaeslalaallvdggfakrvlaa 131
                 kl   a+k al++a++  e++++++ G +l+     i++  aa e    +++P l +   C +  +++ala  l+ +g  + v+a+
  KIR63289.1  27 KLGGIAIKAALERAGVPPEQVQYVIMGQVLQagtGQIPARQAAVEagipMSVPALTINKVCLSGLDAIALADQLIRAGEFDVVVAG 112
                 566779***********************97333245566666552333667789************************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2769.57
//
Query:       KIR63290.1  [L=334]
Description: transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-94  314.8   7.1    4.4e-94  314.4   7.1    1.1  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
    4.1e-05   23.6   0.0    5.2e-05   23.3   0.0    1.3  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
    5.8e-05   23.6   3.6    5.8e-05   23.6   3.6    2.6  3  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    7.4e-05   22.3   0.1    0.00014   21.4   0.1    1.4  1  ParA             NUBPL iron-transfer P-loop NTPase
    8.9e-05   22.1   1.8    0.00078   19.1   1.8    2.2  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
    0.00019   21.2   0.3    0.00019   21.2   0.3    1.8  1  AAA_30           AAA domain
    0.00023   21.1   0.1    0.00073   19.5   0.1    1.8  1  NTPase_1         NTPase
    0.00031   20.4   0.0    0.00077   19.1   0.0    1.7  1  SRP54            SRP54-type protein, GTPase domain
    0.00034   19.7   0.0    0.00051   19.1   0.0    1.2  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
     0.0004   20.9   0.2     0.0026   18.3   0.0    2.1  2  AAA_18           AAA domain
    0.00074   19.9   0.3     0.0019   18.6   0.1    1.8  1  AAA_16           AAA ATPase domain
     0.0011   19.3   0.0      0.002   18.4   0.0    1.3  1  AAA_22           AAA domain
     0.0014   18.0   0.0      0.003   16.9   0.0    1.5  1  DUF1611          Domain of unknown function (DUF1611_C) P-loo
     0.0035   17.4   0.3      0.013   15.6   0.3    2.2  1  MMR_HSR1         50S ribosome-binding GTPase
     0.0053   16.8   0.1      0.015   15.3   0.1    1.7  1  Glyco_transf_4   Glycosyltransferase Family 4
     0.0057   16.1   0.0     0.0087   15.5   0.0    1.2  1  Fer4_NifH        4Fe-4S iron sulfur cluster binding proteins,
     0.0066   16.3   0.0      0.014   15.2   0.0    1.5  1  ATP_bind_1       Conserved hypothetical ATP binding protein
      0.007   16.7   0.1      0.015   15.6   0.1    1.5  1  AAA_19           AAA domain
     0.0077   16.1   0.1      0.019   14.9   0.1    1.8  1  MobB             Molybdopterin guanine dinucleotide synthesis
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.041   13.8   0.0    1.9  2  APS_kinase       Adenylylsulphate kinase
      0.018   14.5   0.0      0.026   14.0   0.0    1.2  1  KTI12            Chromatin associated protein KTI12
      0.023   14.6   0.0      0.069   13.0   0.0    1.8  2  RsgA_GTPase      RsgA GTPase
      0.035   14.5   0.0      0.055   13.9   0.0    1.3  1  RNA_helicase     RNA helicase
      0.043   13.8   0.1       0.29   11.1   0.0    2.1  2  AAA_5            AAA domain (dynein-related subfamily)
      0.046   13.0   2.7      0.069   12.4   0.3    2.4  2  MipZ             ATPase MipZ
      0.047   13.6   0.1      0.084   12.7   0.1    1.3  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
      0.055   13.4   0.0      0.088   12.7   0.0    1.2  1  AAA_31           AAA domain
      0.098   12.4   0.7          1    9.0   0.1    2.3  2  PRK              Phosphoribulokinase / Uridine kinase family
       0.12   11.7   0.0       0.55    9.5   0.0    1.9  1  VirC1            VirC1 protein
       0.13   12.5   1.7       0.26   11.5   0.2    2.1  2  AAA_28           AAA domain
       0.14   12.7   0.0       0.25   11.9   0.0    1.4  1  ABC_tran         ABC transporter
       0.17   12.0   0.5       0.48   10.6   0.0    1.9  2  AAA_33           AAA domain
        0.2   10.8   0.0       0.28   10.3   0.0    1.2  1  NB-ARC           NB-ARC domain


Domain annotation for each model (and alignments):
>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.4   7.1     8e-97   4.4e-94       2     256 ..      38     292 ..      37     301 .. 0.97

  Alignments for each domain:
  == domain 1  score: 314.4 bits;  conditional E-value: 8e-97
                 HHHHHHHH--SHHHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE------------------HCCCTSTTEEEEEE--- CS
        MeaB   2 araitlveserpeakellerllakaGraqvvGltGvPGaGkstlvealglelrrrGkrvavlavDPsspftGGsilGDklRleelavdegvfiRslpsr 100
                 ar+itlves      ++  +l ++aG+aqvvGltG+PG+Gkst++++l+  lr+rG+rv+vlavDPsspftGG+ilGD++R++++a+d+gv+iRs++sr
  KIR63290.1  38 ARLITLVESGDEVLPRVAAALAPYAGQAQVVGLTGSPGVGKSTTTNELVRALRSRGHRVGVLAVDPSSPFTGGAILGDRVRMQDHATDPGVYIRSMSSR 136
                 9************************************************************************************************** PP

                 --HHHHHHHHHHHHHHHHHTT-SEEEEEEESSTTHHHHHHTT-SEEEEEEESSTTTTTTT--CCCHHH-SEEEEE---HHHHHHHHHHHHHHHHHCSTT CS
        MeaB 101 GalGGlaaktrevvllleaaGfDvvlietvGvGqsevdvaevvdtfvvlllpeaGDelqgikkGileiaDiivvnkaDkkeaekaarelraaleleeek 199
                 G+lGGl+a+t ++v++le+aG Dvvl+etvGvGq+ev+va+++dt++vll p+ GD +q++k+GileiaD++vvnkaD+ +a+ + r+++ ++ l e+ 
  KIR63290.1 137 GHLGGLSAATPQAVRVLEGAGCDVVLVETVGVGQAEVEVASLADTTLVLLAPGMGDAIQAVKAGILEIADVFVVNKADRDGADATVRDIQGMIALGERG 235
                 *************************************************************************************************** PP

                 BTTB--EEEEEBCCCTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH CS
        MeaB 200 ekeWrpkvlktsavegeGidelvdaieehrevlkktGllekrrrerakeelrelved 256
                   eWrp+v++  a +geGid++++ai +hr  l +  +l +rr++ra+ e+ +++  
  KIR63290.1 236 PGEWRPQVVRSIAARGEGIDDIAAAIDKHRGWLVEHDELRRRREKRAAAEIEAITLG 292
                 ***************************************999999999998887755 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   9.6e-08   5.2e-05       7      55 ..      73     197 ..      67     288 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 9.6e-08
                 STTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH.HTTEB-HHHH.................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.................................................. RF
        CbiA   7 kGGvGKTtlaanLaralarrglrVllvDaDpqannlai.leglendiep.................................................. 54 
                 + GvGK+t++  L ral  rg+rV ++ +Dp ++ +   + g++ + +                                                   
  KIR63290.1  73 SPGVGKSTTTNELVRALRSRGHRVGVLAVDPSSPFTGGaILGDRVRMQDhatdpgvyirsmssrghlgglsaatpqavrvlegagcdvvlvetvgvgqa 171
                 569*****************************9998745555555555477777777777777777777777777777777776666666666666666 PP

                 .........................C CS
                 .........................x RF
        CbiA  55 .........................d 55 
                                           
  KIR63290.1 172 evevasladttlvllapgmgdaiqaV 197
                 66666666666666555555444440 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.8       1.2   6.3e+02      45     136 ..      22      60 ..       2      74 .. 0.36
   2 !   23.6   3.6   1.1e-07   5.8e-05       4     101 ..      79     185 ..      76     290 .. 0.78
   3 ?   -1.2   0.0       4.5   2.4e+03     104     104 ..     264     264 ..     189     316 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 1.2
  Glyco_trans_4_4  45 lpvprrpspladlaalralrrll.rqrrerpdvvhahsptaglaarlarrrrgiplvvtlhglllrrgsgavrrlyralerrllrradavlvv 136
                      +p+  ++++ +d++a+++l  l+ + +                                                       +l r++a l++
       KIR63290.1  22 VPMLVERARAGDPRAVARLITLVeSGD------------------------------------------------------EVLPRVAAALAP 60 
                      111111122233333333333333223......................................................333333333333 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 1.1e-07
  Glyco_trans_4_4   4 gryvaelaraLaarGheVtvltpapapg.............apeleedgvrvhrlpvprrpspladla.alralrrllrqrrerpdvvhahspt 83 
                      ++ ++el+raL+ rGh+V vl+ +p  +             +++++ +gv ++++  +    +l+ l+ a++++ r+l  +  + dvv +++  
       KIR63290.1  79 STTTNELVRALRSRGHRVGVLAVDPSSPftggailgdrvrmQDHATDPGVYIRSMSSRG---HLGGLSaATPQAVRVL--EGAGCDVVLVETVG 167
                      6899******************5554445667888777666666777777765544433...4555542899******..***********999 PP

  Glyco_trans_4_4  84 aglaarlarrrrgiplvv 101
                       g+a +  +  +++ lv+
       KIR63290.1 168 VGQAEVEVASLADTTLVL 185
                      888876554466666655 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 4.5
  Glyco_trans_4_4 104 h 104
                      h
       KIR63290.1 264 H 264
                      1 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   2.6e-07   0.00014       9      41 ..      70     102 ..      64     126 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.6e-07
        ParA   9 lSgKGGVGKStvavnlAlaLakkglkvgllDaD 41 
                 l g  GVGKSt++ +l  aL+++g++vg+l +D
  KIR63290.1  70 LTGSPGVGKSTTTNELVRALRSRGHRVGVLAVD 102
                 56778*************************999 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   1.8   1.4e-06   0.00078       2     161 ..      67     224 ..      66     231 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.4e-06
                 EEEEEESTTCCHHHHHHHHH..CT--SS-EEEEESS-SSCHCCCCCC......HCCCT.........EEEET.TTTECCHCTT-HHHHHHHHHHHHTT- CS
        cobW   2 vtvltGflGsGKTtLlnhll..enraglklavivNefgevsiDaell......retgve........ivele.nGciCctlredllkelealeereerl 83 
                 v++ltG++G GK+t  n+l+   +++g ++ v+  + ++    +++l      +             i +++  G +     + +++++ +++e     
  KIR63290.1  67 VVGLTGSPGVGKSTTTNELVraLRSRGHRVGVLAVDPSSPFTGGAILgdrvrmQ----DhatdpgvyIRSMSsRGHLGGL--SAATPQAVRVLEGA-GC 158
                 789*****************988899**********997766777774444331....0335567777777625666666..56667777777777.6* PP

                 SEEEEEECTTTTHHHHHTTSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHH CS
        cobW  84 dviliEttGlaePapvafteeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldeeallek 161
                 dv+l+Et+G+ ++            +  +d++++++        ++ i+      l+ ad++v+nK+D   ++a+++ 
  KIR63290.1 159 DVVLVETVGVGQAEVE--------VASLADTTLVLLAP----GMGDAIQAVKAGILEIADVFVVNKADRDGADATVRD 224
                 *********9998766........46677777777777....6899999999999*************9877766655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.3   3.4e-07   0.00019      15      54 ..      62     101 ..      54     105 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.4e-07
      AAA_30  15 tsgdrvavltGpAGtGKttalkalreaweaaggrviglAp 54 
                 +++++v+ ltG +G GK+t+ ++l++a++++g+rv +lA 
  KIR63290.1  62 AGQAQVVGLTGSPGVGKSTTTNELVRALRSRGHRVGVLAV 101
                 45567*******************************9996 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   1.4e-06   0.00073       2      31 ..      68      97 ..      67     103 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.4e-06
                EEEE--TTSSHHHHHHHHHHHH...GGGEE CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkssgvkvg 31
                v +TG+pGvGK+T  + ++++l+s+g +vg
  KIR63290.1 68 VGLTGSPGVGKSTTTNELVRALRSRGHRVG 97
                689***********************9996 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.4e-06   0.00077       3     100 ..      67     174 ..      65     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.4e-06
                 EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEEST...SSTTHH....HHHHHHHHHTTEEEEE.SSTTS..CHHHHHHHHHHHHHHTTSSEEEEEE CS
       SRP54   3 villvGlqGaGKTttlaKLaallkkegkkvllvaaDt...fRaaAv....eQLktlaeklgvpvik.kkeea..dpaavakeavekakeekidvvlvDT 91 
                 v+ l G  G+GK tt+  L + l+++g++v + a+D    f  +A+      ++ +a+  gv + + +++++     a + +av+  +  ++dvvlv T
  KIR63290.1  67 VVGLTGSPGVGKSTTTNELVRALRSRGHRVGVLAVDPsspFTGGAIlgdrVRMQDHATDPGVYIRSmSSRGHlgGLSAATPQAVRVLEGAGCDVVLVET 165
                 667899999***************************64447889985433478899999998877653333334567888899999999********** PP

                 --SSTTHHH CS
       SRP54  92 aGrlqndke 100
                  G  q + e
  KIR63290.1 166 VGVGQAEVE 174
                 998887766 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   9.3e-07   0.00051      16      48 ..      66      98 ..      55     110 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 9.3e-07
  TrwB_AAD_bind 16 qhilivGttGsGKtqalekllrairargdraiv 48
                   q + ++G+ G GK++++++l+ra+r+rg+r+ v
     KIR63290.1 66 QVVGLTGSPGVGKSTTTNELVRALRSRGHRVGV 98
                   66789************************9754 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   4.7e-06    0.0026       1      27 [.      68      95 ..      68     125 .. 0.81
   2 ?    0.2   0.0       1.9     1e+03     102     114 ..     270     282 ..     207     294 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.7e-06
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf.gvn 27
                ++ltG pGvGK+t ++eL + l + g +
  KIR63290.1 68 VGLTGSPGVGKSTTTNELVRALRSrGHR 95
                789***************9988444444 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.9
      AAA_18 102 speelleRlekRg 114
                 + +el++R ekR 
  KIR63290.1 270 EHDELRRRREKRA 282
                 3455666666665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   3.4e-06    0.0019      11      53 ..      53      94 ..      47     123 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.4e-06
      AAA_16 11 qLlsalervrsgrpelvllsGesGvGKsslvrellralekdgg 53
                ++++al +  +g+ ++v l+G +GvGKs+  +el ral+ +g 
  KIR63290.1 53 RVAAALAPY-AGQAQVVGLTGSPGVGKSTTTNELVRALRSRGH 94
                566777644.68889********************99998843 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.6e-06     0.002       5      57 ..      65     113 ..      62     132 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.6e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdll 57 
                 a+++ +tG +G+GK+t+ ++l++ l      + +r++v+ v+++s+ +   +l
  KIR63290.1  65 AQVVGLTGSPGVGKSTTTNELVRALRS----RGHRVGVLAVDPSSPFTGGAIL 113
                 677789******************953....348*********9998766665 PP

>> DUF1611  Domain of unknown function (DUF1611_C) P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.6e-06     0.003      23      70 ..      75     121 ..      62     129 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.6e-06
     DUF1611  23 avGKrttaleleealeerGlkaafvaTgqtgiliagegvvldavvvdf 70 
                  vGK tt+ el +al+ rG +++++a ++ + ++ g  +  d+v++++
  KIR63290.1  75 GVGKSTTTNELVRALRSRGHRVGVLAVDPSSPFT-GGAILGDRVRMQD 121
                 59***************************99886.4456667777665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   2.4e-05     0.013       2      24 ..      68      91 ..      67     291 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.4e-05
                EEEEESTTSSHHHHHHHHHTS.TE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge.ka 24
                v++ G p vGKSt  n l+++ ++
  KIR63290.1 68 VGLTGSPGVGKSTTTNELVRAlRS 91
                899****************96433 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   2.7e-05     0.015       5      76 ..      79     161 ..      77     173 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.7e-05
  Glyco_transf_4   5 erhvleLaraLarrGheVtvvtpgddgpleeev...........elvvrvprvplpllkrllrslaflrrlrrllkrekpDvv 76 
                      + + eL+raL+ rGh+V v++ +++ p+                +   v  + + +++ l+   a+ +++ r+l+  + Dvv
      KIR63290.1  79 STTTNELVRALRSRGHRVGVLAVDPSSPFTGGAilgdrvrmqdhATDPGVYIRSMSSRGHLGGLSAATPQAVRVLEGAGCDVV 161
                     57889****************77777766666634444555532111222222223333333444445566666666677776 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.6e-05    0.0087       3      42 ..      68     107 ..      66     121 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.6e-05
   Fer4_NifH   3 iaiyGkGGiGksttsqnlsaalaemgkkvlivGCDPkaDs 42 
                 + + G  G+Gkstt++ l+ al ++g++v ++  DP +  
  KIR63290.1  68 VGLTGSPGVGKSTTTNELVRALRSRGHRVGVLAVDPSSPF 107
                 5677999*****************************8755 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.6e-05     0.014       2      36 ..      71     105 ..      70     108 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.6e-05
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgrsvavvNLDPAa 36 
                 +G +G+GK+t +++l+  l++rg +v v+  DP +
  KIR63290.1  71 TGSPGVGKSTTTNELVRALRSRGHRVGVLAVDPSS 105
                 699******************************75 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   2.8e-05     0.015       8      40 ..      63      95 ..      55     106 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.8e-05
      AAA_19  8 lkekvllvtaGpGtGKTrvlkhivallvelggv 40
                 +++v+ +t+ pG GK++++++ v+ l ++g++
  KIR63290.1 63 GQAQVVGLTGSPGVGKSTTTNELVRALRSRGHR 95
                57899********************99988854 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   3.5e-05     0.019       1      34 [.      67     100 ..      67     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.5e-05
        MobB   1 vlgivgksgsGKTtLleklipelkarglrvgtiK 34 
                 v+g++g  g GK t  ++l+++l++rg rvg++ 
  KIR63290.1  67 VVGLTGSPGVGKSTTTNELVRALRSRGHRVGVLA 100
                 6899***************************985 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       7.2   3.9e+03     113     130 ..      16      33 ..      12      38 .. 0.85
   2 ?   13.8   0.0   7.5e-05     0.041       2      37 ..      65     100 ..      64     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7.2
                 HHHHHTTTSHHHHHHTTS CS
  APS_kinase 113 vceerDpkglYkkareGe 130
                 v+++rD+  l ++ar+G 
  KIR63290.1  16 VRRSRDVPMLVERARAGD 33 
                 77899**********996 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 7.5e-05
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLd 37 
                 + vv ltG  g GKst +n+l ++L+++g++v +L 
  KIR63290.1  65 AQVVGLTGSPGVGKSTTTNELVRALRSRGHRVGVLA 100
                 56899*************************999886 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.8e-05     0.026       4      36 ..      68     100 ..      66     108 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.8e-05
                 EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE- CS
       KTI12   4 vvltGlPssGKstrakeLakaleeekrsvvvid 36 
                 v ltG P +GKst ++eL +al++++ +v v+ 
  KIR63290.1  68 VGLTGSPGVGKSTTTNELVRALRSRGHRVGVLA 100
                 559*********************999998865 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00013     0.069      92     124 ..      57      90 ..      41      98 .. 0.81
   2 ?   -2.8   0.0       9.6   5.2e+03      49      64 ..     206     221 ..     197     264 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00013
                  HHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  92 elkellkd.ktsvlvGqSGvGKStLinallpele 124
                  +l+++  + +++ l G+ GvGKSt  n+l+  l+
   KIR63290.1  57 ALAPYAGQaQVVGLTGSPGVGKSTTTNELVRALR 90 
                  5666665558999***************987655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 9.6
                  EEEEEE-GGG--HHHH CS
  RsgA_GTPase  49 pvivlnKiDlleeeee 64 
                   v v+nK+D    + +
   KIR63290.1 206 DVFVVNKADRDGADAT 221
                  4555666665444442 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0    0.0001     0.055       3      25 ..      70      92 ..      68     131 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.0001
  RNA_helicase  3 lyGpsgeGKStlakeLakallkk 25
                  l+G++g+GKSt+++eL++al ++
    KIR63290.1 70 LTGSPGVGKSTTTNELVRALRSR 92
                  78****************99854 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00053      0.29       4      24 ..      70      93 ..      68     154 .. 0.75
   2 ?    0.1   0.0       1.4   7.3e+02      35      76 ..     219     276 ..     217     312 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00053
                EE--SSSSHHHHHHHGGGGB...S CS
       AAA_5  4 LvGppGtgKselaerlaaal...n 24
                L G pG+gKs+ + +l +al   +
  KIR63290.1 70 LTGSPGVGKSTTTNELVRALrsrG 93
                89******************5441 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.4
                 T--HHHHH--B--..........--------...............G-SEEEEESGGG CS
       AAA_5  35 dtteedlkgrreik.ngttslvdsplvraar...............egeilvlDEver 76 
                 d t +d++g + +   g  +++++++   a                +g+++  DE+ r
  KIR63290.1 219 DATVRDIQGMIALGeRGPGEWRPQVVRSIAArgegiddiaaaidkhRGWLVEHDELRR 276
                 6788888888888888888999999988777566666666666666666666666654 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   0.00013     0.069      11      40 ..      75     104 ..      66     192 .. 0.77
   2 ?   -1.7   0.1       2.6   1.4e+03     160     185 ..     275     300 ..     265     305 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
                 TSSHHHHHHHHHHHHHTTT--EEEEE--TT CS
        MipZ  11 GsGksttavhvavaLlkkGarvaaidldlr 40 
                 G Gkstt+  ++ aL ++G+rv+++ +d  
  KIR63290.1  75 GVGKSTTTNELVRALRSRGHRVGVLAVDPS 104
                 89***********************99964 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.6
                 HHHHHTTTTT-SS--EEEEEEESB-S CS
        MipZ 160 wearkkrakaerkevdWvvlrnrlsa 185
                 +  r+kra ae +++   vlr r++ 
  KIR63290.1 275 RRRREKRAAAEIEAITLGVLRARIGS 300
                 55678888888899999999999876 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00016     0.084       6      89 ..      11      92 ..       9     104 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00016
  Glyco_tranf_2_3  6 vlVptfneedvlgevlesllaqe.yprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksd 89
                       Vp+ ++++++  ++e + a + +   +++  v+ +d+  l+++ ++ a++ + + +vv  +  +g+ gks+ +ne +ra +s+
       KIR63290.1 11 AGVPSVRRSRDVPMLVERARAGDpRAVARLITLVESGDEV-LPRVAAALAPYAG-QAQVVGLTGSPGV-GKSTTTNELVRALRSR 92
                     579*************999996424556666666666555.5555566688877.7899999*****8.***********98854 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00016     0.088      12      45 ..      75     108 ..      69     128 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00016
      AAA_31  12 GvGKTTtsvnlaaalaklgkkvLlvDlDpQanat 45 
                 GvGK+Tt+ +l  al ++g++v +  +Dp +  t
  KIR63290.1  75 GVGKSTTTNELVRALRSRGHRVGVLAVDPSSPFT 108
                 9*********************999999977666 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1    0.0019         1       1      27 [.      67      93 ..      67     111 .. 0.88
   2 ?    1.0   0.1      0.54   2.9e+02     143     167 ..     238     262 ..     237     271 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0019
         PRK  1 vIgvagsSGaGkttvarklekifgrek 27
                v+g++gs G Gk+t++++l+ +++  +
  KIR63290.1 67 VVGLTGSPGVGKSTTTNELVRALRSRG 93
                79******************9998654 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.54
         PRK 143 elarklqRDiaeRGrsleavldsil 167
                 e+  +++R ia+RG  ++++ + i 
  KIR63290.1 238 EWRPQVVRSIAARGEGIDDIAAAID 262
                 5777899*************99886 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0     0.001      0.55      12     111 ..      75     186 ..      67     199 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.001
       VirC1  12 GaGkttalmglcsalasdgkrvalfeadenrPltkwkena....lrkgawddacevfvad...elplle....aayeeaegeGfdyaladtrg.Gssel 98 
                 G Gk+t+   l  al s+g+rv+++  d   P+t          ++  a d+   + +     +l  l     +a +  eg+G d++l++t g G++e+
  KIR63290.1  75 GVGKSTTTNELVRALRSRGHRVGVLAVDPSSPFTGGAILGdrvrMQDHATDPGVYIRSMSsrgHLGGLSaatpQAVRVLEGAGCDVVLVETVGvGQAEV 173
                 899*****************************9976544300013444555555554433112454444111156667799999999999987689999 PP

       VirC1  99 nntiiassdllli 111
                 + + +a + l+l+
  KIR63290.1 174 EVASLADTTLVLL 186
                 9999998888764 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00048      0.26       4      22 ..      70      88 ..      67     100 .. 0.76
   2 ?   -0.5   0.1       2.3   1.3e+03     120     145 ..     267     294 ..     239     302 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00048
      AAA_28  4 itGgestGKTtlleaLaar 22
                +tG ++ GK+t++++L + 
  KIR63290.1 70 LTGSPGVGKSTTTNELVRA 88
                8************999743 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.3
      AAA_28 120 ei.dddgeRredl.eereaiderlreal 145
                 ++ + d+ Rr ++ +++++i+++++ +l
  KIR63290.1 267 WLvEHDELRRRREkRAAAEIEAITLGVL 294
                 6667788887654144556666555555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00046      0.25      11      37 ..      65      91 ..      61     140 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00046
                TSEEEEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 11 gekvaivGenGaGKStLlkllagllkp 37
                 ++v+++G+ G GKSt  + l + l+ 
  KIR63290.1 65 AQVVGLTGSPGVGKSTTTNELVRALRS 91
                689**************9999887765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00089      0.48       1      24 [.      67      90 ..      67     137 .. 0.88
   2 ?   -1.3   0.1       4.1   2.2e+03     109     128 ..     272     286 ..     261     301 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00089
      AAA_33  1 lvllvGlpGsGKstlaerllkklg 24
                +v l G pG+GKst   +l+++l 
  KIR63290.1 67 VVGLTGSPGVGKSTTTNELVRALR 90
                56689***************9987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 4.1
      AAA_33 109 etlkeRlakRaangddrsev 128
                 ++l++R +kRaa+     e 
  KIR63290.1 272 DELRRRREKRAAA-----EI 286
                 5566666666665.....33 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00051      0.28      16      45 ..      63      90 ..      48     100 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00051
                TTSCSEEEEEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC 16 delqslvvalvGmgGvGKttlakqilnksd 45
                ++    vv+l G +GvGK+t  ++ ++ + 
  KIR63290.1 63 GQA--QVVGLTGSPGVGKSTTTNELVRALR 90
                344..5**************9999888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 2577.69
//
Query:       KIR63291.1  [L=137]
Description: alkaline-shock protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-17   64.1   2.5    1.7e-17   63.8   2.5    1.1  1  Asp23     Asp23 family, cell envelope-related function


Domain annotation for each model (and alignments):
>> Asp23  Asp23 family, cell envelope-related function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   2.5   9.3e-22   1.7e-17       3     107 ..      19     127 ..      17     128 .. 0.91

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 9.3e-22
       Asp23   3 geieisdeViakiagiaaeeveGvvgmagk...lkdglaellgk...enltkgvkvevgeekqvavdlyvvveYGvkipevaenvqekVkeaveemtgl 95 
                 g++ +sdeV++kia  aa+ v+Gv+ ++g+   +++++ +++g     + ++g +++v+ ++ + v+l +v++ G  +p+v++ v+++V++ave + gl
  KIR63291.1  19 GTTHVSDEVVEKIAVAAARSVPGVADLGGDvarFFNAVFDRVGLdqvGDARRGCSAHVT-NGAAVVNLVIVIDAGQPVPQVTDGVRAAVTRAVEAY-GL 115
                 7899**************************777777777777545567889********.99*******************************976.9* PP

       Asp23  96 evseVnvhVqgv 107
                 +v e+n++V +v
  KIR63291.1 116 RVDEINIRVDDV 127
                 ***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1117.41
//
Query:       KIR63292.1  [L=562]
Description: methylmalonyl-CoA mutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.3e-208  693.8   0.0   1.4e-208  693.6   0.0    1.0  1  MM_CoA_mutase  Methylmalonyl-CoA mutase


Domain annotation for each model (and alignments):
>> MM_CoA_mutase  Methylmalonyl-CoA mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  693.6   0.0  7.9e-213  1.4e-208       1     513 []      28     554 ..      28     554 .. 0.98

  Alignments for each domain:
  == domain 1  score: 693.6 bits;  conditional E-value: 7.9e-213
  MM_CoA_mutase   1 kTaegievkplYtaedl......eekklgeslPGefPftRGvkatmyrgrpWtirqyagfstaeetnerykklLeaGqtglsvafdlptlrgyDsd 90 
                    +T +g++v+p+Y + +       e  ++g  +PGefP+tRG ++t+yrgr+Wtirq+agf++a++tneryk+ L aG  glsvafd+ptl+g Dsd
     KIR63292.1  28 TTLSGMPVDPVYGPPEGvaypgfE--RIG--WPGEFPYTRGLYPTGYRGRTWTIRQFAGFGNARQTNERYKMILGAGGGGLSVAFDMPTLMGRDSD 119
                    599**********98876774322..456..***************************************************************** PP

  MM_CoA_mutase  91 hpraegevGkaGvaidsledmetlldgidldkvsvsmtinaaalpllamylaaaeeqgvdleklsgtiqnDiLkellargtyiyppepslrliadi 186
                    +p+a gevG++Gvaids++dme+l+dgidl+ v++smti+++a+p+++myl+aae+qg+dl++l+gt+q+Di+ke++a++++ + pep+lrli+d+
     KIR63292.1 120 DPQALGEVGHCGVAIDSAADMEVLFDGIDLAGVTTSMTISGPAVPVFCMYLVAAERQGADLSTLDGTLQTDIFKEYIAQKEWLFDPEPHLRLIGDL 215
                    ************************************************************************************************ PP

  MM_CoA_mutase 187 ieyaakevpkfntisvsgyhireaGatavqElAftladGveYvralleaGldvdefaprlsFffaigsdffeeiAklRAaRrlWarivkekfgake 282
                    +ey+a+e+p+++++svsgyhireaGata+qElA+tladG+ Yv+ +l++Gldv+ fap lsFff+ + dffeeiAk+RAaRr+War++++++ga++
     KIR63292.1 216 MEYCAREIPRYKPLSVSGYHIREAGATAAQELAYTLADGFGYVELGLSRGLDVNVFAPGLSFFFDSHVDFFEEIAKFRAARRIWARWLRDVYGATS 311
                    ************************************************************************************************ PP

  MM_CoA_mutase 283 ekslklrvhaqTsgvsltaqdpyvNilRttlealaAvlggtqslhtnsfDealalPtefsariArntqlilaeEsgvakvvDPlgGSyyvEaLTde 378
                    ek+l+lr+h+qT+gvsltaq+p +N++Rt++ealaAvlggt+slhtn++De+lalPt++sa+iA++tq++l+eE+gv +v+DPlgGS+yvEaLTd+
     KIR63292.1 312 EKALWLRFHTQTAGVSLTAQQPVNNVVRTAVEALAAVLGGTNSLHTNALDETLALPTDESAEIALRTQQVLMEETGVVNVADPLGGSWYVEALTDK 407
                    ************************************************************************************************ PP

  MM_CoA_mutase 379 laekawklfqeieeaG............GmlkaiesGlvqeeiaesaarrqkaiesrkevivGvNkfrpneeekelevlkideeveerqaerleal 462
                    ++++a+++f++i+++G            G+l+ ie+G+++ +iaesa  +q+a+e+++++ivGvN+++  +  k+le+l+i++eve +q + l++ 
     KIR63292.1 408 IEAEAEEIFARIRQLGgegphqigpmtsGILRGIEDGWFTGHIAESAFVYQQALEKGDKRIVGVNCHT-GTIAKDLEILRISHEVEVEQRRVLAER 502
                    *******************************************************************5.666799********************* PP

  MM_CoA_mutase 463 raerdeaavkaaLaalgeaarse.nllaraveaaralatlGeisdaleevfg 513
                    +a+rd+aa++aa   + e+ r++ n+++++++a+ra+atlGei+dal++++g
     KIR63292.1 503 KAARDDAAARAAVTLMVEVGRTGeNMIPAMLDAVRAEATLGEICDALRAEWG 554
                    *********************889**************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 3495.31
//
Query:       KIR63293.1  [L=304]
Description: thioredoxin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-21   74.1   3.1    8.2e-21   74.1   3.1    2.2  2  TPR_20         Tetratricopeptide repeat
    4.5e-10   39.4   0.0      7e-10   38.8   0.0    1.3  1  Thioredoxin    Thioredoxin
    5.3e-05   23.6  18.7    0.00031   21.2   2.6    3.4  3  TPR_19         Tetratricopeptide repeat
      0.002   18.6   0.0     0.0057   17.1   0.0    1.7  1  Thioredoxin_2  Thioredoxin-like domain
     0.0029   17.9   0.9        5.8    7.3   0.0    3.2  2  TPR_12         Tetratricopeptide repeat
      0.005   17.6  17.9      0.013   16.2   2.0    4.3  4  TPR_14         Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.018   14.9   0.0      0.027   14.3   0.0    1.2  1  TraF           F plasmid transfer operon protein
      0.026   14.6   0.0        0.2   11.7   0.0    2.1  2  TrbC_Ftype     Type-F conjugative transfer system pilin assem
      0.044   14.4  13.5      0.044   14.4  13.5    3.1  3  TPR_16         Tetratricopeptide repeat
      0.063   13.4   0.9       0.26   11.5   0.3    2.4  2  TPR_2          Tetratricopeptide repeat
      0.068   12.9   0.1       0.15   11.8   0.1    1.6  1  DSBA           DSBA-like thioredoxin domain
       0.15   11.8   0.0       0.31   10.8   0.0    1.4  1  KaiB           KaiB domain
       0.28   11.5   0.0        8.6    6.8   0.0    2.3  2  Thioredoxin_8  Thioredoxin-like


Domain annotation for each model (and alignments):
>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.3      0.33   4.5e+02      10      34 ..     190     214 ..     177     218 .. 0.77
   2 !   74.1   3.1   5.9e-24   8.2e-21       4      90 .]     218     304 .]     215     304 .] 0.97

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.33
      TPR_20  10 eleaalaanpddldarldlAlalla 34 
                 + ++ la++p+d +a+  lA++ la
  KIR63293.1 190 AYKKILAESPADAAAEAGLAQVGLA 214
                 4556678999999999999987665 PP

  == domain 2  score: 74.1 bits;  conditional E-value: 5.9e-24
      TPR_20   4 dapelaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaarkqllkifealgsqdplvakyRrkLsslLf 90 
                 + +++++  aa++anpdd+ a+l  A+  +  g  e+A ++L+++++r++++++d+ar++l+++f+++g++dp+va +Rr L+s+Lf
  KIR63293.1 218 AGADPRAALAAAEANPDDVPAQLLAADIEVLSGMAEQAYARLVDLVRRTSGDDRDKARQHLIALFTVAGQDDPAVASARRALASALF 304
                 568999999*****************************************************************************9 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0     5e-13     7e-10       2     101 ..      52     153 ..      51     155 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 5e-13
                  EEESSHHHHHHHHTT..TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHH CS
  Thioredoxin   2 vlvltkenFeeevak..ekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekekl 97 
                  v+ +t++n ++ev +  ++ +v+v F A   +   ++aP+le+la e  +   la++dv++n+ +a+ ++v+g+Pt++ +  g+ v+ ++ga ++++l
   KIR63293.1  52 VIDVTEANLQAEVLErsTAMPVVVFFGAAGYPESDQFAPVLERLAAEGGGAWALARIDVQDNPRIAQMFQVQGVPTVYAVVGGRPVDAFSGAVPEAQL 149
                  6678999999999996667789999999999******************************************************************* PP

                  HHHH CS
  Thioredoxin  98 aafl 101
                  ++++
   KIR63293.1 150 RQWI 153
                  **98 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   2.6   2.3e-07   0.00031       1      34 [.     178     211 ..     178     216 .. 0.94
   2 !    8.6   3.0    0.0019       2.6       7      52 ..     222     263 ..     214     271 .. 0.80
   3 ?    2.8   0.3      0.12   1.7e+02      11      35 ..     279     303 ..     269     304 .] 0.75

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.3e-07
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAea 34 
                 +l++gd+++A ++++++l+e+p +a+a ++LA++
  KIR63293.1 178 ALMSGDLDAAEEAYKKILAESPADAAAEAGLAQV 211
                 6899****************************97 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0019
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                 + +Ala+ e+    +p++  a+ll A++ + +g  ++A a L +l 
  KIR63293.1 222 PRAALAAAEA----NPDDVPAQLLAADIEVLSGMAEQAYARLVDLV 263
                 4555555555....************************99886665 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.12
      TPR_19  11 lalleqalqedpknaearllLAeal 35 
                 +al++ a q+dp  a ar +LA al
  KIR63293.1 279 IALFTVAGQDDPAVASARRALASAL 303
                 5677778899999999999999887 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.1e-06    0.0057      65     109 .]     105     153 ..      67     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.1e-06
  Thioredoxin_2  65 d....ieenvelarkygvrgtPtiv.fldgkeivarlpGyvpaeeleall 109
                         +++n   a++++v+g+Pt+  +  g+ +v+   G+vp+++l++++
     KIR63293.1 105 LaridVQDNPRIAQMFQVQGVPTVYaVVGGR-PVDAFSGAVPEAQLRQWI 153
                    355557888899***********88466666.***************985 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0042       5.8      50      73 ..     173     196 ..     160     196 .. 0.89
   2 !    6.9   0.3    0.0055       7.5      22      73 ..     252     300 ..     250     303 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0042
      TPR_12  50 nLgrlyralgryeeAlelleeala 73 
                 + ++  +++g++++A+e++++ la
  KIR63293.1 173 DEADDALMSGDLDAAEEAYKKILA 196
                 66888999************9886 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0055
      TPR_12  22 AlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 A++ + + ++++rr+ G+d++ + + l++L ++    g+ + A++  ++ala
  KIR63293.1 252 AEQAYARLVDLVRRTSGDDRDKARQHLIALFTVA---GQDDPAVASARRALA 300
                 7788888888888888888877777777765554...555555555555554 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.0   9.6e-06     0.013      12      43 ..     179     210 ..     169     211 .. 0.88
   2 ?    4.1   0.9     0.077   1.1e+02      23      43 ..     225     244 ..     214     245 .. 0.79
   3 ?    2.5   0.8      0.24   3.3e+02       3      42 ..     238     279 ..     236     281 .. 0.73
   4 ?    6.1   0.4     0.017        24       3      29 ..     274     300 ..     272     302 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.6e-06
      TPR_14  12 lalGdpdeAiallrralalaPddaeawlllaq 43 
                 l +Gd+d+A+++++++la  P+da+a   laq
  KIR63293.1 179 LMSGDLDAAEEAYKKILAESPADAAAEAGLAQ 210
                 668***********************999998 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.077
      TPR_14  23 llrralalaPddaeawlllaq 43 
                 +l +a +++Pdd  a+ll a+
  KIR63293.1 225 AL-AAAEANPDDVPAQLLAAD 244
                 34.44478********99987 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.24
      TPR_14   3 allalaeallalGdpdeAiallrralala.Pdd.aeawllla 42 
                 a+l++a+++  +G  ++A a l +++++   dd + a+ +l 
  KIR63293.1 238 AQLLAADIEVLSGMAEQAYARLVDLVRRTsGDDrDKARQHLI 279
                 788889999999999999999998888641444146877776 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.017
      TPR_14   3 allalaeallalGdpdeAiallrrala 29 
                 a++ l +++  +G+ d A+a +rrala
  KIR63293.1 274 ARQHLIALFTVAGQDDPAVASARRALA 300
                 77888888999**************97 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.9e-05     0.027     102     200 ..      43     132 ..      32     141 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-05
        TraF 102 rPvsnlarkvlndarkeekeaalkklakeygLlfFyrgkcpyceaqapilqafadkyg..levraVsvdgrplpelpnarvdkgqaarlgvkrtPalvl 198
                  P+ + +  v +  + + ++++l++       +fF +++ p ++++ap+l+++a + g  +++  ++v+++p   +++          ++v+ +P++++
  KIR63293.1  43 LPAAAGGGPVIDVTEANLQAEVLERSTAMPVVVFFGAAGYPESDQFAPVLERLAAEGGgaWALARIDVQDNPR--IAQ---------MFQVQGVPTVYA 130
                 68888888899999999***************************************96559999999999988..666.........9********999 PP

        TraF 199 vd 200
                 v 
  KIR63293.1 131 VV 132
                 85 PP

>> TrbC_Ftype  Type-F conjugative transfer system pilin assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015       0.2      11      80 ..      59     133 ..      55     156 .. 0.79
   2 ?    0.6   0.0      0.42   5.8e+02       3      25 ..     140     162 ..     137     166 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
  TrbC_Ftype  11 sLkrlvrqaekagavlvlrGfpegkslketvkalakllee.....emekasvqidPllFrqfkitaVPalvlaee 80 
                 +L++ v + + a  v+v+ G  +  ++++++  l++l +e     + ++ +vq +P++ + f+++ VP++ ++ +
  KIR63293.1  59 NLQAEVLERSTAMPVVVFFGAAGYPESDQFAPVLERLAAEgggawALARIDVQDNPRIAQMFQVQGVPTVYAVVG 133
                 566666667777779999998888788888888888888899988888999999***************987765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.42
  TrbC_Ftype   3 vSlSmPeesLkrlvrqaekagav 25 
                 +S ++Pe++L++++  + kag+v
  KIR63293.1 140 FSGAVPEAQLRQWIGAVLKAGGV 162
                 58899*********999999886 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4  13.5   3.2e-05     0.044       1      67 [.     172     235 ..     172     236 .. 0.84
   2 ?    1.2   2.6      0.44   6.1e+02      19      43 ..     224     245 ..     221     267 .. 0.81
   3 ?    0.9   3.0      0.55   7.5e+02      17      62 ..     253     300 ..     250     304 .] 0.68

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.2e-05
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraalraapda 67 
                 l++a++al +gd d+A++a++  l+     P++a+A  +l+++ l++ r+a+A   + +aa++a pd+
  KIR63293.1 172 LDEADDALMSGDLDAAEEAYKKILAES---PADAAAEAGLAQVGLAR-RVAGADpRAALAAAEANPDD 235
                 689************************...***************99.44444335556666778776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.44
      TPR_16  19 aleaalkrdpssPdaaeAllllgda 43 
                 a+ aa +++   Pd++ A+ll +d+
  KIR63293.1 224 AALAAAEAN---PDDVPAQLLAADI 245
                 334666777...***9999999987 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.55
      TPR_16  17 aaaleaalkrdpssPd..aaeAllllgdaalrqgrlaeAaalyraalr 62 
                 + a+ +++++ ++++   +  A+ +l  ++ ++g  ++A+a  r+al+
  KIR63293.1 253 EQAYARLVDLVRRTSGddRDKARQHLIALFTVAGQDDPAVASARRALA 300
                 555555555555555555778888888888888888888888888875 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   0.00019      0.26       8      33 ..     175     200 ..     172     201 .. 0.88
   2 ?   -3.0   0.0       8.5   1.2e+04      16      29 ..     287     300 ..     285     301 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
       TPR_2   8 GlayyklgdyeeAleafekAleldPn 33 
                 ++ ++ +gd++ A+ea++k l+  P 
  KIR63293.1 175 ADDALMSGDLDAAEEAYKKILAESPA 200
                 6678899***************9996 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.5
       TPR_2  16 dyeeAleafekAle 29 
                 + + A++  ++Al+
  KIR63293.1 287 QDDPAVASARRALA 300
                 55668888888885 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00011      0.15     152     190 ..     109     151 ..      92     154 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHTT-SSSSEEEE..TTC..EEEESSSSHHHHHH CS
        DSBA 152 avrentaaaqslgvtGvPtvvv..dgk..rmvfGadrldtlad 190
                 +v++n + aq  +v+GvPtv++  +g+   +++Ga +  +l++
  KIR63293.1 109 DVQDNPRIAQMFQVQGVPTVYAvvGGRpvDAFSGAVPEAQLRQ 151
                 57899999************8888998888999**99999987 PP

>> KaiB  KaiB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00022      0.31      12      79 ..      86     153 ..      79     155 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHCCCHCTTTEEEEEEETTTSHCHHCCTCEESCCCCCCC.CSCCHCCCCCCHHHCCHHCCC CS
        KaiB  12 eralenlkkleeedlgfqyeLqvvdvleqPelaeedrlvatPaLikl.sPePkqrlaGdlilqqlklwl 79 
                 ++ + +l++l++e  g+  +L  +dv+++P  a+ ++++ +P+   +    P+  ++G    +ql +w+
  KIR63293.1  86 DQFAPVLERLAAE-GGGAWALARIDVQDNPRIAQMFQVQGVPTVYAVvGGRPVDAFSGAVPEAQLRQWI 153
                 5566667777766.788899999********************97651567888888888888888875 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0062       8.6       4      26 ..      73      95 ..      71     100 .. 0.91
   2 ?    2.3   0.0      0.15   2.1e+02      65      87 ..     107     129 ..      96     135 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0062
                   EEEEE--SSSHHHHHHHHHHHHH CS
  Thioredoxin_8  4 vlLyfgaswcppckaftpklkel 26
                   v+++fga  +p++++f p l +l
     KIR63293.1 73 VVVFFGAAGYPESDQFAPVLERL 95
                   89*****************9886 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.15
                    EE-TT-HHHHTT-S--TT-SEEE CS
  Thioredoxin_8  65 pfddkkrnklkkkynvkaiPtlv 87 
                    + d  ++  ++++++v+++Pt++
     KIR63293.1 107 RIDVQDNPRIAQMFQVQGVPTVY 129
                    55555667899**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2084.53
//
Query:       KIR63294.1  [L=657]
Description: penicillin-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-44  150.7   0.0    6.4e-44  150.4   0.0    1.1  1  Transpeptidase  Penicillin binding protein transpeptidase dom
    6.7e-18   65.7   0.0      1e-17   65.1   0.0    1.2  1  PBP_dimer       Penicillin-binding Protein dimerisation domai
    2.1e-05   24.7   0.0    4.4e-05   23.7   0.0    1.6  1  MecA_N          NTF2-like N-terminal transpeptidase domain
  ------ inclusion threshold ------
      0.076   13.3   1.4       0.24   11.7   1.4    1.8  1  DUF3035         Protein of unknown function (DUF3035)


Domain annotation for each model (and alignments):
>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.4   0.0   1.4e-47   6.4e-44       2     305 ..     378     651 ..     377     652 .. 0.92

  Alignments for each domain:
  == domain 1  score: 150.4 bits;  conditional E-value: 1.4e-47
                     EEEEEETTT-BEEEEEEESE-TTTHHCCTCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS.ECTCCCC-SSSSEEE CS
  Transpeptidase   2 aavvldaktgevlamaskpsydpnakvgkneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqsikdweqdnkgsegit 96 
                     a v++   +g+vla a+ p            +  n a++ q++PGStfK+v+a+  l++g+++ d  + +++   ++g+s+k+ ++     +++ 
      KIR63294.1 378 ALVAVRVGDGAVLAAANGPGA----------AGENLAFTAQVPPGSTFKMVSALGLLDRGAVTLDGPVACPKTFTVDGRSFKNSDNFA--LGTVP 460
                     678889999*********943..........34799************************************9999999999999997..7889* PP

                     HHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--B--SSH.HHHHHHHHTTT.SBB-HHHHHHHHHHHHTTTEEE--BSEE CS
  Transpeptidase  97 lrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaGvptrkw.legatisfgiG.ltvtplqlaqayaaiangGklvkPhlvk 189
                     +r+ ++kS+nt+f+ la klg+d l ++ +++gl++ ++++l   +  v  + +  e+a ++fg+G + v+pl +a a aa+a+ G   +P+lv 
      KIR63294.1 461 FRTDFAKSCNTAFAALAPKLGPDGLAETGRALGLEAEWDLGLDAFTGKVSADGSpAEQAAAAFGQGtTLVSPLAMAAATAAVAR-GRWEQPKLV- 553
                     ******************************************9988888888667*****************************.*********. PP

                     EEEECTTEEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCGTCTTS--EEEEEEEEECSSSTTSEEEEEEEEEEEEEESTTS-SEEEEEE CS
  Transpeptidase 190 aivdpdgvrkvkpkelnklpisketaekvkeglkgvvsrgsgtataavegykvagKTGTAevagkkgngkkegakiswfvgyapadnpkyavavl 284
                       vdp       + ++ +   ++e +e +++++++vv++g++ta +  +g +v+gKTGTAe  ++  ++      ++wfvg+  +    +a+av 
      KIR63294.1 554 --VDP----APAKAAPAGPQLKPESVEPLRTMMREVVTAGTATALKDAPGGPVHGKTGTAEYDDDPAHT------HAWFVGWQGD----VAFAVF 632
                     ..676....5688899999*********************777777*****************977776......57******98....****** PP

                     ECTCSSSSSCCHHHHHHHHHH CS
  Transpeptidase 285 ieqpkeaaggkaaapiakkil 305
                     +e ++  ++g++a pia++ l
      KIR63294.1 633 VERGG--SSGSSAVPIAERFL 651
                     *****..99999999998765 PP

>> PBP_dimer  Penicillin-binding Protein dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   2.3e-21     1e-17       3     168 ..     164     327 ..     162     332 .. 0.95

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 2.3e-21
                 EE----EE-TTS-EEEEEEEEEEEEEEESSS-HHHHHHHHHHHHHHC.HHHTTS-H.HHHHHHHCCCCTSSTTSCECCCCCEECHHHCCCHHHHHCSTT CS
   PBP_dimer   3 papRGeIyDrngrlLAtnrpsytltitpsklkkkkalekikklakll.eseenldd.erleelalkknsykaykpvviaediseeevarikenakdlpG 99 
                  apR+ ++D  g++++t rp++++ ++ps+++++ka   +++l   + +    +++  +l++l ++ + + +  +v++ + + +e + +i+ + +dlpG
  KIR63294.1 164 AAPRAGVLDGAGKPIVTPRPVVRVGLQPSEVTDAKAV--ARQLDAAFrAVRPAITPpVDLTDLPKRLADADPGAFVEVVT-LRDEAYRQIRSRIYDLPG 259
                 79*********************************99..888888887778999999*****999************999.****************** PP

                 -EEEEEEEEEETTTSTTHHHH-EEEEC-HHHHHCCCCHTCCTTCEEEESHHHHHTHHHHHECCCEEEEE CS
   PBP_dimer 100 inievepkRyYpkgelaahvlGyvgkiteeelekykekgyssgdliGksGlEkqyEeeLrGkkGkrqvk 168
                  +++ e     p  e+a+ vlG+v ++++++l+++ +  y++gdl+G  Gl +  +e+LrG+ G + ++
  KIR63294.1 260 TKFRAEKLDLAPTREFARAVLGSVDQAQADDLAAHPD-RYRQGDLVGHGGLQGRHDERLRGTPGLTVIS 327
                 ***********************************98.9*************************98765 PP

>> MecA_N  NTF2-like N-terminal transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   9.9e-09   4.4e-05       2     117 .]      42     156 ..      41     156 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 9.9e-09
                 HHHHHHHHHHHHHTT-HHHHHCTB--BSSBSS-HHHHHHHHHHHCCCTT-EEEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEEEETTE. CS
      MecA_N   2 aeeaaetFldawakgdykkaasllseqskkeisekeavekyqaiydglqvkklkieakkvkkdkentaeipykvsmntpagkiktldskltltkeeee. 99 
                 +++++++Fl+ w kgd++ +  ++      ++   ++  ++ +  + l  +   +    + k + n a+   +v + +p+g  +++d +  lt  ++  
  KIR63294.1  42 PAPTVDAFLSGWGKGDLQAVGFVTPAGL--KVPAADVARQLRELSGELADTPPVLRRTGDPKVDANVATAGIRVAWALPGGIRWEYDRQVRLTTGDDGq 138
                 5677888888888888876655555444..6667788888888888888888888888999999999************************99877666 PP

                 EEE---GGGTSTT--TT- CS
      MecA_N 100 wkidWepslifPqleend 117
                 w + Wep++++ ql+++d
  KIR63294.1 139 WRVIWEPQVVHEQLTDGD 156
                 **************9986 PP

>> DUF3035  Protein of unknown function (DUF3035)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.4   5.4e-05      0.24      31      85 ..     345     399 ..     337     408 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.4e-05
     DUF3035  31 lpaPtpGaarpq..detpraeavaaLgGnpsaalkaksglsagekaLlkqagrdgvd 85 
                 +++P+pG+a ++  d  ++  a aaL G++++a+     ++ g++a+l++a+  g++
  KIR63294.1 345 RQEPKPGQAVRTtlDVATQNAADAALRGEKRRAAL--VAVRVGDGAVLAAANGPGAA 399
                 789****9766523778889999********9985..99************986665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 4208.97
//
Query:       KIR63295.1  [L=1684]
Description: NAD-glutamate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
          0 2174.0   0.0          0 2173.7   0.0    1.0  1  Bac_GDH        Bacterial NAD-glutamate dehydrogenase
  ------ inclusion threshold ------
      0.026   14.3   0.0       0.24   11.1   0.0    2.2  1  ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydro


Domain annotation for each model (and alignments):
>> Bac_GDH  Bacterial NAD-glutamate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 2173.7   0.0         0         0       9    1530 ..     142    1676 ..     137    1677 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2173.7 bits;  conditional E-value: 0
     Bac_GDH    9 eedgwesehtvveivtddmpFlvdsvtaelnrqgltvhlvvhpvleverdkegklleveeekeeaekaek...eslilieidrqsdaeeleeleeel 102 
                  +e + +++htv+eivtddmpFlvdsvta ln+++l+vhl+vhp++ v+r+  g+l+ev+++ e +++ +    es++ ieid ++da+e e+l++el
  KIR63295.1  142 HEPDADQHHTVIEIVTDDMPFLVDSVTALLNAHHLDVHLLVHPLVVVRREPLGRLVEVAADVEPDDSIDGdlvESWMRIEIDPVRDAAEREKLRREL 238 
                  56678899**************************************************999988887766888************************ PP

     Bac_GDH  103 ekvledvraaveDwkkmreklkelaeele.....kekakvekeeleeaaefLewladdhftfLgyreyeleeeeeee..eleaveesglGilrkeee 192 
                  ++vl+dvr+aveDw++mr+++ +la+el+     +++++v ++++++++e+L+wla+dhftfLgyrey+l+++ ++e  +leav ++glGilr+++ 
  KIR63295.1  239 QRVLTDVREAVEDWPRMRQRALALADELAtartsDSRPPVPEKDITDSVELLRWLAHDHFTFLGYREYRLVDAPGGEgpALEAVLGTGLGILRSDS- 334 
                  ****************************97776666677999*****************************998887789****************. PP

     Bac_GDH  193 keksrelaelpeearkelkekellvltkansrstvhrpayldyvgvkkfdekgkvvgerrflGlftsaaykesvkeiPllrrkveevleragleees 289 
                    ++r+l+++++ea++++ ek+ll++tkansr+tvhr+ayldy+g k fd++g+vvgerrflGlf++aay++sv+e+P++rrkv+evl+r+gl+++s
  KIR63295.1  335 -PEARALSSMTPEAHEKVLEKRLLIITKANSRATVHRSAYLDYIGFKVFDDAGQVVGERRFLGLFSTAAYRTSVRELPVVRRKVAEVLDRSGLSQRS 430 
                  .9*********************************************************************************************** PP

     Bac_GDH  290 hsgkalleiletyprdeLfqiseeeLleialgilklqerkrvrlflrrdkfgrfvsvlvyvprdryntelrekiqelleealegesvefttllsesv 386 
                  hsgk+ll+iletyprdeLfqi++e+L++ ++g+l+++ r+++r+flrrd++grf+s+l+y+prdr++t+ r+++q++l ++l+g  v++tt+++es+
  KIR63295.1  431 HSGKDLLQILETYPRDELFQIKTEDLYHAVIGVLRMAGRRQLRVFLRRDAYGRFISCLIYLPRDRFTTQNRLRMQDILLRELNGVGVDYTTRVTESM 527 
                  ************************************************************************************************* PP

     Bac_GDH  387 larlhfvvrvekkea.pevdveelearlaeaarsWedelaealleelgeekakellkryaeafpeaYkedfsaeeavaDierlekleeeeelalsly 482 
                  lar+hf+vr+++++   ++d++ l ++la+a+r W+d+++ +l ++lg+e+ak+l++rya+afpe+Yk+ +++ ea++D+++le lee+ +l+++l+
  KIR63295.1  528 LARVHFIVRTDPTRPpGDIDADLLAEELADATRLWDDDYRLVLERKLGDEQAKHLFSRYADAFPEGYKDGHTPYEAMKDLAKLELLEEPGQLEMHLF 624 
                  *************99668******************************************************************************* PP

     Bac_GDH  483 rpl............eaeeeelrlklyraeeplsLsdvlpvlenlGlrvlderpyeieaedekevwihdfelelekeeeldldevkerfeeafaavw 567 
                  r++             +e+ ++r+k+yr +ep++Ls+vlpvl++lG++v+de+pye+e+ d  ++w++df+l+l ++ + +l+ev+ ++e+afaa+w
  KIR63295.1  625 RKQlapragggrdadVDETMDVRFKVYRYGEPMMLSAVLPVLHSLGVKVVDEHPYEVERVD-GRIWLYDFGLRLPEG-HQELAEVRPHVENAFAAAW 719 
                  **8889999999876677889***************************************9.99************9.889**************** PP

     Bac_GDH  568 rgeaenDgfnrLvleagltwrevavlrayakYlrQigltfsqeyieetllkhpeiarllvelFearfdpaleeeeeeeee.ekleeeieeaLdevas 663 
                  rgeae Dgfn+Lvl+ gltwr+v+vlrayakYlrQ+g+ fsq+y+e+t++++p+ia+llvelFe+rf p +++ e+++e+  +l +++++aLd+vas
  KIR63295.1  720 RGEAEVDGFNELVLRGGLTWRQVVVLRAYAKYLRQTGTVFSQDYMEQTFIAYPRIAALLVELFEVRFAPGEASVEQRRERgGELVAAVKAALDDVAS 816 
                  *********************************************************************99988777766699************** PP

     Bac_GDH  664 ldedrilrrllelieatlRtnfyqkdedgeakeyislKldpskipelPePrPlfEifVysprvegvHLRggkvARGGlRWSDRreDfRtEvLGLvKa 760 
                  ld+drilr++l+li+atlRt+fy k   g++k+y+++Kldp++ip+lP+PrP fEifVyspr+egvHLR+g vARGGlRWSDRreDfRtEvLGLvKa
  KIR63295.1  817 LDQDRILRSYLTLIQATLRTSFYAKPVGGRPKPYVAFKLDPQAIPDLPAPRPRFEIFVYSPRFEGVHLRYGPVARGGLRWSDRREDFRTEVLGLVKA 913 
                  ************************************************************************************************* PP

     Bac_GDH  761 QqvKNavIVPvGaKGGFvvkrlpkaadreallaegiacYktfirgLLditDnlvdgevvppedvvrhDedDpYLVVAADKGTAtFSDiANevsaeyg 857 
                  Q+vKNavIVPvGaKGGFv+k++p  +dr+    e++acY+ f+ ++Ld+tDn+v+ge+vppedvvrhD dDpYLVVAADKGTAtFSDiANe+sa ++
  KIR63295.1  914 QMVKNAVIVPVGAKGGFVLKQKP--GDRD----EAVACYQEFVGAMLDVTDNIVAGEIVPPEDVVRHDADDPYLVVAADKGTATFSDIANEISAGHQ 1004
                  ***********************..9998....6889************************************************************ PP

     Bac_GDH  858 FWLgDAFASGGsvGYDHKkmGITArGAWesvkrhFrelgvdiqtedftvvGiGDmsGDVFGNGmLlsehirLvaAFdHrhiFiDPnPdaaasfaErk 954 
                  FWLgDAFASGGs+GYDHKkmGITArGAWesvkrhFrelg+d+qt+dftvvG+GDmsGDVFGNGmLlsehirLvaAFdHrhiF+DP+Pdaaas+aErk
  KIR63295.1 1005 FWLGDAFASGGSAGYDHKKMGITARGAWESVKRHFRELGHDTQTQDFTVVGVGDMSGDVFGNGMLLSEHIRLVAAFDHRHIFLDPDPDAAASYAERK 1101
                  ************************************************************************************************* PP

     Bac_GDH  955 RLFelprssWadYdksliSkGGgvfsRsaKsiklspevrellgieeee..ltPneLikaiLkapvdLlwnGGiGTYvkaseeshadvgDkandalRv 1049
                  RLF+lprssW+dYd++liS+GGgv++R+aKs+++sp+vr++lg+++++  l+P+eL+kaiL+apvdL+wnGGiGTYvkas+e++a+vgDk+nda+Rv
  KIR63295.1 1102 RLFDLPRSSWEDYDEKLISAGGGVYPRAAKSVPVSPQVRAVLGLDDDVtqLSPQELMKAILTAPVDLFWNGGIGTYVKASSETNAEVGDKSNDAIRV 1198
                  **********************************************9889*********************************************** PP

     Bac_GDH 1050 ngkelrakvvgEGgNLGltQlgRiEyalkggrintDaiDNsaGVdcSDhEVNiKilLnklvaegeltlkqRnklLaemtdeVaelVLrdnyrqtqal 1146
                  +g+ lr++vvgEGgNLG+tQlgRiEyal+ggri+tD+iDN+aGVdcSDhEVNiKilLn++va+gelt+ +R++lLa mtdeVaelVLrdny+q++a+
  KIR63295.1 1199 DGRSLRCRVVGEGGNLGCTQLGRIEYALAGGRIYTDFIDNAAGVDCSDHEVNIKILLNTAVADGELTVPERDELLAGMTDEVAELVLRDNYDQARAI 1295
                  ************************************************************************************************* PP

     Bac_GDH 1147 slaeaqaaeeleeqarliraLekegkLdralefLPsdeelaerkaagkgltrPelavLlaYakivlkeellasdlpddpylakelaeyFPkalrerf 1243
                  ++++aqaa+ l +++r+i++Le++g L+rale+LP deela+r+  ++glt+Pe+avLlaY+kivl++e+la+ l+d++++++ l++yFP+++rerf
  KIR63295.1 1296 NNSQAQAASLLPVHRRMINELERSGALNRALEALPPDEELAART--ETGLTAPEFAVLLAYTKIVLEREILAEGLADEEWTTDVLVNYFPTPMRERF 1390
                  ******************************************97..689************************************************ PP

     Bac_GDH 1244 aeeiekHrLrreiiatalaNelvnrlGitfvlrlaeetgasvaevvrayvvarevfdleelweeiealdnkvsaevqlelllevrrlleratrWllr 1340
                  a+++ +HrLrr+i++t+l+Ne +nr Gitfv+r+ eet+as+a+v+rayvv+revf+l+elw+++ealdnkv+ e+q++++l++rrll+ra+rWl++
  KIR63295.1 1391 ADRMGQHRLRRDIVTTVLVNEAINRGGITFVFRVVEETAASAADVIRAYVVVREVFGLRELWDAVEALDNKVDPELQTAVYLDTRRLLDRAVRWLVT 1487
                  ************************************************************************************************* PP

     Bac_GDH 1341 nrrkeldiaaeverfkekvealkakleelleeeelealearaeelveagvpeelakrvaslealasaldivevaeetkrdveevaevyfalgerlel 1437
                  nrr++ld+ ae++r++++v++l + le+l+ ++e+e ++a++++++++g+p+ la+++++l +++ +ld+ve+a++++rdv eva+vyf l++r+++
  KIR63295.1 1488 NRRSPLDVPAEIARLRDGVARLLPGLENLFYGSEREGIAAHIDAMTSRGLPRGLAEQATRLMYSFGLLDVVETAATSGRDVGEVASVYFVLSDRFRV 1584
                  ************************************************************************************************* PP

     Bac_GDH 1438 kwlleqiselevedrwqalarealrddlaaaqraltaevlkkseeeesaeeaveawlekneealerakallaelkasekldlaklsvalrelr 1530
                  ++ll++is l+++drwq+lar alr dl+aa +altaevl ++ ++  + e+ve+w+++n+++++ra++++ e++  +++dla lsv+lr++r
  KIR63295.1 1585 DSLLSKISLLPRADRWQTLARMALRYDLYAALAALTAEVLGSTPDSLPPLERVEQWEQSNATSIHRARRAMGEFDD-SRADLAALSVLLRQIR 1676
                  *****************************************9********************************99.699***********97 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.7e-05      0.24       4     184 ..    1021    1250 ..    1014    1265 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.7e-05
                     TTTTTHHHHHHHHHHHHHHHHTTTS-STTEEEEEE--SHHHH....HHHHHHHHCT-EEEEEEESSEEEEETTEE...-HHHHHHH.HHCSSSS CS
  ELFV_dehydrog    4 ldrpeaTglGvvyyveemlkklkldslegkrvaisGsGnvgs....yaallltelgakvvavsDssGviydpeGl...dieellel.keerksv 89  
                     + + + T++G+   v++ +++l+ d ++ + +++ G G++      + +ll+     + va  D++ +  dp+     + +e ++l    r s 
     KIR63295.1 1021 HKKMGITARGAWESVKRHFRELGHD-TQTQDFTVVGVGDMSGdvfgNGMLLS--EHIRLVAAFDHRHIFLDPDPDaaaSYAERKRLfDLPRSSW 1111
                     5566778888888888888887777.66667777776655441100333333..4567788888887777765432343333333312222224 PP

                     TTHSHH.............STSTSEEESHHSHH............................HHSS-SEEEE-SSTTSB-HH.HHTHTH...... CS
  ELFV_dehydrog   90 keykks.............sekkaeyieneeel............................lelkvdilvPcAtqneidee.nakali...... 135 
                     ++y+++             +           ++                            l+ +vd++   ++   ++++ + +a +      
     KIR63295.1 1112 EDYDEKlisagggvypraaK-----------SVpvspqvravlgldddvtqlspqelmkaiLTAPVDLFWNGGIGTYVKASsETNAEVgdksnd 1194
                     44444455444444332210...........223444445556666666666666666666555777777776666665441233334554444 PP

                     .......HTT-SEEE-SSSS-B-HHHHHHHHHTT-EEE-HHHHTTHHHHHHHHHHH CS
  ELFV_dehydrog  136 .......kngvklvvEgANlpttqeAkeileeagvlvvpdkaaNaGGVtvSslEml 184 
                              ++++v Eg Nl++tq  +  +  ag  ++ d++ Na GV +S  E+ 
     KIR63295.1 1195 airvdgrSLRCRVVGEGGNLGCTQLGRIEYALAGGRIYTDFIDNAAGVDCSDHEVN 1250
                     4444554338*****************************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.99u 0.39s 00:00:01.38 Elapsed: 00:00:00.50
# Mc/sec: 10165.60
//
Query:       KIR63296.1  [L=241]
Description: peptidase C60 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-18   66.3   0.0    2.6e-18   66.0   0.0    1.1  1  Sortase   Sortase domain


Domain annotation for each model (and alignments):
>> Sortase  Sortase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   1.5e-22   2.6e-18       1     124 [.      97     239 ..      97     240 .. 0.86

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 1.5e-22
                 EEECCGTEEEEEEE.SCSSCHCTT........SEEECSTT-BTTSSSEEEEEEE....BSSTTSTTGGGGGGHTT-EEEEEESSSEEEEEEEEEEEEEE CS
     Sortase   1 lsipalginlpvle.gtdeedlka........gagfldesakpgeagnfvlaGH....rvgkgavFsdLkklekgdaivvetkkgksyvYrvfsveivt 86 
                 ++ip++g+++p+++ gt+ + + +        +ag+++  a pge gn+v++GH    +vg++avF++L+ l++gd+i v++++g+  +++v++v+  +
  KIR63296.1  97 IRIPRIGVDAPIMTlGTNPDGTVQvppleqalSAGWYSPGASPGEIGNAVVVGHvdsaKVGGPAVFYSLGALQPGDTIEVARDDGSRVTFTVDEVR-AY 194
                 79************965555544455557899**********************876559************************************.77 PP

                 TTHG....GGGSHHTTSEEEEEEEES.SSSS...STSEEEEEEEEE CS
     Sortase  87 pdev....svldptpgdaiLtLiTCt.pfds...enneRlivhAkl 124
                 p++      v++p+ ++a L  +TC  +fd+   ++ +++iv A++
  KIR63296.1 195 PKAAfpteLVYGPN-DRAGLRVVTCGgQFDQaagSYVDNVIVFATM 239
                 77666885566666.899********77777985599*****9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1687.70
//
Query:       KIR63297.1  [L=596]
Description: cellulose 1,4-beta-cellobiosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-90  303.1   0.2    3.9e-90  302.7   0.2    1.1  1  Glyco_hydro_6  Glycosyl hydrolases family 6
      1e-28   99.6  13.3      1e-28   99.6  13.3    2.4  2  CBM_2          Cellulose binding domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_6  Glycosyl hydrolases family 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.7   0.2   4.4e-94   3.9e-90      14     305 ..     198     544 ..     188     545 .. 0.94

  Alignments for each domain:
  == domain 1  score: 302.7 bits;  conditional E-value: 4.4e-94
  Glyco_hydro_6  14 daalaakaakvakvptavWldriakiee...........lrkaldeavaqakaegavvvlVvYnlPgRDCaaqaSaGelasaaalekYk.eyidai 97 
                    +a+  a  ++v+++ptavW+dria+i++           +r++l++a+aq    ++ +++V+YnlPgRDC+a+aS+Gel+ ++ l +Yk eyid+i
     KIR63297.1 198 KAESVAGGNRVSNTPTAVWIDRIAAINGtpdsssngamgVRDHLNAALAQG---ANYIQFVIYNLPGRDCSALASNGELKPDE-LPRYKtEYIDPI 289
                    4467778899****************88899**998888888888887765...5889**********************997.7*********** PP

  Glyco_hydro_6  98 aagigk..ysdlravvvlEpDslanlvtnls.....vekCaeaaaaaerlaglayAvkkLkalpnvavYlDaghsgwlgWeknleeaaellakvvk 186
                    aa+ g+  y++lr++ ++E Dsl+nl+tn+s     +++C++++a++ +++g+ yA++kL a+ nv++Y+Dagh+gwlgW++n+++ a+ l++ + 
     KIR63297.1 290 AAIQGDpkYASLRIINIVEIDSLPNLITNTSdkpggTATCDTMKANGGYVNGVGYALAKLGAIGNVYNYIDAGHHGWLGWDSNFSPSAAILREAAG 385
                    *****999***********************999999********************************************************777 PP

  Glyco_hydro_6 187 aa.agvakvdGfalnvsnynateea..................teanksvdekkYakalskalvaaglpalahfviDtsRnGkqgkerkda..... 258
                    a+ + +a+v+Gf++n++ny+a++e+                  +++n +vde ++a+a++++lv++g++++++++iDtsRnG++g++r++      
     KIR63297.1 386 ASgSTPANVHGFIVNTANYSALKEPyfkvtdtvngqtvrqskwVDWNYYVDELSFAQAFRNELVSKGFSSNIGMLIDTSRNGWGGSARPTGpgamt 481
                    777889*****************99*******************************************999************9999999999*** PP

  Glyco_hydro_6 259 .................geWCNppgrglGerpttstgdplvdaylWvKppGeSDGtcdrsaaea 305
                                     g+WCN+ g+glGerp+++  +p +day+WvKppGeSDG+++++++++
     KIR63297.1 482 svdtyvnggrvdrrfhtGNWCNQAGAGLGERPKAAP-EPGIDAYVWVKPPGESDGSSTEIPNNE 544
                    *********************************997.89*******************998875 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6  13.3   1.1e-32     1e-28       1     101 []      41     140 ..      41     140 .. 0.95
   2 ?   -1.3   0.2       0.3   2.7e+03      41      81 ..     420     460 ..     397     474 .. 0.65

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 1.1e-32
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE-.-TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETT CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtl.pagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnG 98 
                 ++++y++ ++W +Gft+svt+kN g+++ ++W++ +t+ +++q+v+q W+a++sqsG++vtatn s+Ng+ia+Ggs+++Gf+gs++gsn++ptsft+nG
  KIR63297.1  41 CSVDYTT-NDWAGGFTGSVTIKNIGDAV-SSWNLGFTFpNSSQKVVQGWSAKWSQSGQNVTATNESYNGSIASGGSVTLGFNGSWSGSNPKPTSFTLNG 137
                 6677765.6*****************98.68*******66789******************************************************** PP

                 EE- CS
       CBM_2  99 aaC 101
                  +C
  KIR63297.1 138 VVC 140
                 *99 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.3
                 TEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEE CS
       CBM_2  41 gqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfq 81 
                 gq+v q+   ++    +++++ ++  N+ +  G s ++G+ 
  KIR63297.1 420 GQTVRQSKWVDWNYYVDELSFAQAFRNELVSKGFSSNIGML 460
                 55555544444444445566666666666666766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:01.95
# Mc/sec: 924.03
//
Query:       KIR63298.1  [L=122]
Description: hypothetical protein TK50_20845 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 871.24
//
Query:       KIR63299.1  [L=317]
Description: hypothetical protein TK50_20850 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2242.80
//
Query:       KIR63300.1  [L=801]
Description: ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-30  106.5  23.9    2.8e-30  106.5  23.9    2.4  3  NIT        Nitrate and nitrite sensing
    4.9e-05   23.8   0.0    9.5e-05   22.9   0.0    1.5  1  HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like A
    5.9e-05   23.4   5.2      7e-05   23.1   1.9    3.0  2  HAMP       HAMP domain
  ------ inclusion threshold ------
        8.5    6.7   9.0         16    5.9   2.1    3.5  2  DUF3040    Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> NIT  Nitrate and nitrite sensing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5  23.9   6.3e-34   2.8e-30       2     229 ..      58     294 ..      57     295 .. 0.91
   2 ?   -3.9   3.8       3.4   1.5e+04     105     117 ..     380     392 ..     316     464 .. 0.52
   3 ?   -2.2   0.5       1.1   4.7e+03      34     162 ..     395     435 ..     380     489 .. 0.49

  Alignments for each domain:
  == domain 1  score: 106.5 bits;  conditional E-value: 6.3e-34
         NIT   2 LvhaLQkERglsagylasgggerkaaelaaqraatDaalaalr.........a.l.aglarrldallraldqLpalRrqvdtrkldakeavaaYtdvia 89 
                 +v +LQ+ER+l+++ la+     +  el++qr++tD a+a+lr         + + + l++rld+ll ald Lpa R  +d r++d++ a+  Y+ +++
  KIR63300.1  58 VVAELQRERRLTVVQLAGTA---ELPELTEQRRRTDVAVAELRrrvngerlrDaAgDLLDARLDRLLGALDALPAGRGFIDRRQVDRTGAIGLYSGMVG 153
                 799**************654...4888**************99999999998557778899************************************** PP

         NIT  90 aLldladelaqgspdrelarqlralaalsrakEalsqerallaaalaagrfsaalyaaflslvarqqaalaefraaatpaqralydetvtgpavkaaet 188
                 a ++  ++la+ +pd el rq+ al+al r++E l+q +alla++l+ gr  +++++++ + +++q+ + ++++a +++++ra+y+++ +++a  +++ 
  KIR63300.1 154 AAFQAFTALAA-LPDNELNRQALALTALGRSRELLGQADALLAGVLVTGRYATGEHTQLVQIIGNQRFLTETAVADLPADDRAAYQRLAESEAFVRLRV 251
                 ****9999998.69*****************************************************999*******************999*99**99 PP

         NIT 189 lrdr.l.astg....gvdaedeeeWfaastaridqlravesrladdl 229
                 l+d+   a ++    ++da++   W +++ a+   lr+ e + ad +
  KIR63300.1 252 LQDElVrA-DPgrapRLDARA---WETSQEAVQRGLRDFELTQADAI 294
                 99996432.222334558888...****************9999987 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.4
         NIT 105 relarqlralaal 117
                  e+ + +ra++++
  KIR63300.1 380 DEIGQVGRAFTEV 392
                 3333333333333 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.1
         NIT  34 aatDaalaalr................alaglarrldallraldqLpalRrqvdtrkldakeavaaYtdviaaLldladelaqgspdrelarqlralaa 116
                 +a+  a++++                 +                                                                       
  KIR63300.1 395 TAVRSAVDEVTlrrglnevflniarrsQ----------------------------------------------------------------------- 422
                 3444444442222333333333332221....................................................................... PP

         NIT 117 lsrakEalsqerallaaalaagrfsaalyaaflslvarqqaalaef 162
                                                   lv rq a+l+ +
  KIR63300.1 423 ---------------------------------GLVHRQLALLDRM 435
                 .................................2222222222222 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.1e-08   9.5e-05       6     109 ..     518     620 ..     514     623 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.1e-08
                 HHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT....GTCS..TTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET CS
   HATPase_c   6 LrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlk....klfe..kfsqddstkrggggtGlGlsivkklvelmgGeiwvesep 98 
                 + +++ +l++Na  f+++++++ v+ ++  + + +++ D G G+    l+    +l +   f+             lGl +v +l+ ++g +++++   
  KIR63300.1 518 VIHLLAELIENATAFSPPGTRVVVRGQSLPNGYAVEIIDQGLGMAAPALEeanrRLATppEFDP-------ADSARLGLFVVARLAARHGVRVQLRPAA 609
                 679************9999999999995448***************999966666666555555.......56789********9999******98888 PP

                 TTEEEEEEEEE CS
   HATPase_c  99 grGttftftlp 109
                 ++G t ++ +p
  KIR63300.1 610 QGGVTAVVLIP 620
                 99999877766 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   1.9   1.6e-08     7e-05       2      47 ..     330     392 ..     329     398 .. 0.83
   2 ?   -1.3   0.1      0.67     3e+03      31      41 ..     439     449 ..     417     451 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.6e-08
                 HHHTTHHHHHHHHHHHHHHTTT.............BTSST...CCT.TSSSHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaG.............dldtr...lpv.sgrDEiGeLarafNaM 47 
                 + r++ r+L  +++aa ++a+              d+d+    +p  +g DEiG+++raf + 
  KIR63300.1 330 VGRSLARRLTAVRDAALEMAERrlpdvvtrlrrgeDVDVAreaPPLqYGEDEIGQVGRAFTEV 392
                 78******************976777777777777555558898888*************976 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.67
                 TTSSSHHHHHH CS
        HAMP  31 vsgrDEiGeLa 41 
                 v+ +DE++eL 
  KIR63300.1 439 VEDPDELAELF 449
                 45679999995 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   2.1    0.0035        16      10      83 ..     248     325 ..     240     326 .. 0.75
   2 ?    2.8   0.7     0.031   1.4e+02       9      48 ..     430     469 ..     424     474 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0035
     DUF3040  10 vLeeiEraLaaeDPklaaalrggaar....arrrslrrlavlavllfva.GllllvlGvaaaavvlgvvGfvvmlagvv 83 
                 +L+ ++ +L++ DP  a +l ++a +    a +r lr+   l  + ++a   + + +G++a+  v gv+G+++++a v+
  KIR63300.1 248 RLRVLQDELVRADPGRAPRLDARAWEtsqeAVQRGLRD-FELTQADAIAdRTVPVAVGILARLGVAGVLGLAAIVASVL 325
                 68889999999998877777444433333377777777.6666667777678889999999999999999999999886 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.031
     DUF3040   9 rvLeeiEraLaaeDPk.laaalrggaar.arrrslrrlavla 48 
                  +L+ +Er+   eDP+ la+ +r +    + rr++++l++la
  KIR63300.1 430 ALLDRMERRV--EDPDeLAELFRVDHLAtRLRRHAEDLVILA 469
                 689*****99..688549999988877755555556655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 5743.30
//
Query:       KIR63301.1  [L=140]
Description: dynein regulation protein LC7 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-24   84.8   1.2    3.6e-24   84.4   1.2    1.2  1  Robl_LC7   Roadblock/LC7 domain
  ------ inclusion threshold ------
      0.011   14.9   0.8      0.013   14.8   0.8    1.2  1  PNP_UDP_1  Phosphorylase superfamily


Domain annotation for each model (and alignments):
>> Robl_LC7  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   1.2     4e-28   3.6e-24       1      91 []      11     102 ..      11     102 .. 0.98

  Alignments for each domain:
  == domain 1  score: 84.4 bits;  conditional E-value: 4e-28
                 HHHHHHHHCCHHCTECEEEEEETTS-EEEE.CCSSSS-HHHHHHHHHHHHHHHHHHHHHCTSSSECEEEEEETTEEEEEEECTTTEEEEEEE CS
    Robl_LC7   1 lveelleelqsvpgvrgalvvskdGlviat.stldnddadqlAalasgllsaakaaarelgegelkelliegkkgelyltpagegalLvvla 91 
                 l+++l+e+++++p +r a+v+s+dGl++ +   ld+++a++l alasg+ s+ak+a+r+l +g+++++++e+++ +l++t+ag+ga+L+v+a
  KIR63301.1  11 LDWLLDELVERLPAAREAVVLSADGLLLGAsAELDRTAAEHLCALASGFSSLAKGASRHLAAGGVRQTVVEMESAYLFVTAAGQGACLAVVA 102
                 58****************************9***********************************************************86 PP

>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.8   1.4e-06     0.013     135     195 ..      40     102 ..       6     128 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.4e-06
                 CHHTTTTTEEEEEEEEESESS-CHHHHHHHHHHTC..-CEEESSHHHHHHHHHHTT--EEEEE CS
   PNP_UDP_1 135 aaealgikvhrGvvatadgfyaeteaelrllrrlg..adaveMEtaavaqlArelgipfaair 195
                 a ++l+++  + ++a a+gf++  + ++r+l+  g    +veME+a +++ A+  g++ a+++
  KIR63301.1  40 ASAELDRTAAEHLCALASGFSSLAKGASRHLAAGGvrQTVVEMESAYLFVTAAGQGACLAVVA 102
                 56667788888899999999999999999888888546699***************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 912.48
//
Query:       KIR63302.1  [L=199]
Description: ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-27   97.3   0.1    2.2e-25   89.8   0.1    2.7  1  ATP_bind_1   Conserved hypothetical ATP binding protein
     0.0015   18.6   0.0     0.0022   18.1   0.0    1.3  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0063   16.8   0.3      0.013   15.8   0.3    1.5  1  AAA_28       AAA domain
  ------ inclusion threshold ------
      0.015   15.0   0.1      0.021   14.6   0.1    1.3  1  AAA_24       AAA domain
      0.015   15.0   0.5      0.034   13.9   0.0    1.8  2  AAA_29       P-loop containing region of AAA domain
       0.02   15.4   0.0      0.026   15.1   0.0    1.3  1  ABC_tran     ABC transporter
      0.039   13.0   0.3      0.054   12.6   0.3    1.2  1  T2SSE        Type II/IV secretion system protein
      0.053   14.1   0.4       0.11   13.0   0.4    1.6  1  AAA_18       AAA domain
      0.073   13.1   0.0       0.13   12.3   0.0    1.3  1  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
      0.099   12.2   0.0       0.17   11.4   0.0    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
       0.11   11.8   0.0       0.16   11.2   0.0    1.2  1  Zeta_toxin   Zeta toxin
       0.13   12.2   0.4       0.24   11.3   0.4    1.5  1  RsgA_GTPase  RsgA GTPase
       0.13   12.5   0.0       0.34   11.1   0.0    1.8  1  Roc          Ras of Complex, Roc, domain of DAPkinase
       0.14   11.7   0.2       0.17   11.4   0.2    1.2  1  cobW         CobW/HypB/UreG, nucleotide-binding domain
        0.3   10.9   0.1       0.43   10.4   0.1    1.2  1  dNK          Deoxynucleoside kinase


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.1   1.9e-28   2.2e-25       1     238 [.      23     189 ..      23     192 .. 0.95

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 1.9e-28
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDPAaeelpYeaavdirelitledvmed..lglgpngalvvaleflresldwldeelekeeddyllfD 97 
                 ++G++G+GKtt+v+alse+++l+                       ++e++t + + +d   g++ + +++va++f+r+++   +e+l     + +lf+
  KIR63302.1  23 IAGGFGAGKTTLVSALSEVRPLQ-----------------------TEEVLTGAGIGVDdlSGVEGKSTTTVAMDFGRITI---NEDL-----QVYLFG 90 
                 79*********************.......................*************99*******************9...9***.....****** PP

  ATP_bind_1  98 tPGQielfthseslakiveeLesefalvvvyLvDsqrltd...ptkfisgllsalsamlrlelPhvvvlnkfDllkeklekeleffedvealsllleke 193
                 tPGQ+++++++++la         +al++v+L+D++rl+d   +++++++           ++P+vv +n+fD  +                       
  KIR63302.1  91 TPGQDRFWFLWDELA--------FGALGAVVLADTRRLADcfpSIDYFEQ----------RNIPFVVGVNCFDDGR----------------------- 148
                 ***************........99***************99999****9..........*************944....................... PP

  ATP_bind_1 194 eekykklaeaiaelleefalvlrflplssekeesiedllslidea 238
                     + +  a++ +l++   v+ +++++++++++  +l+sl+++ 
  KIR63302.1 149 ----RFSLDAVRHALDLDPGVPLVFCDARDRQSGKLVLISLVEHV 189
                 ....55678999*********9*****************999986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.8e-06    0.0022       1      55 [.      20      93 ..      20     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.8e-06
                EEEEEESTTSSHHHHHHHHHT..................STEEESSSTTSSSSEEEEEEEETT.EEEEEEECGG CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltg..................ekaivsdkpgtTrdinegrvklkg.keielvDtpG 55
                +++i+G   +GK+tL++al++                  + + v+ k  tT  + +gr+++++  +++l  tpG
  KIR63302.1 20 KILIAGGFGAGKTTLVSALSEvrplqteevltgagigvdDLSGVEGKSTTTVAMDFGRITINEdLQVYLFGTPG 93
                589*****************6666666667766767664589******************887799******** PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   1.1e-05     0.013       1      22 [.      20      41 ..      20      55 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.1e-05
      AAA_28  1 kivitGgestGKTtlleaLaar 22
                ki i Gg ++GKTtl++aL++ 
  KIR63302.1 20 KILIAGGFGAGKTTLVSALSEV 41
                799****************985 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   1.7e-05     0.021       2      33 ..      18      48 ..      17      82 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.7e-05
      AAA_24  2 klkiliyGpsgiGKTtlakelgpkplfidtek 33
                +lkili G  g+GKTtl++ l  ++  ++te+
  KIR63302.1 18 ALKILIAGGFGAGKTTLVSAL-SEVRPLQTEE 48
                689*****************9.7777677765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.8e-05     0.034      19      44 ..      17      40 ..       8      43 .. 0.79
   2 ?   -3.7   0.1       8.6     1e+04      34      37 ..      65      68 ..      64      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.8e-05
      AAA_29 19 idlkgatlltGpsGsGKSTllDAiqa 44
                + l   +l++G  G+GK+Tl+ A++ 
  KIR63302.1 17 LAL--KILIAGGFGAGKTTLVSALSE 40
                443..48**************99875 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8.6
      AAA_29 34 GKST 37
                GKST
  KIR63302.1 65 GKST 68
                9999 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   2.1e-05     0.026      12      43 ..      19      50 ..       9     117 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.1e-05
                SEEEEEESTTSSHHHHHHHHTTSS--SEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 12 ekvaivGenGaGKStLlkllagllkpteGeil 43
                 k+ i G  GaGK+tL+++l++    + +e+l
  KIR63302.1 19 LKILIAGGFGAGKTTLVSALSEVRPLQTEEVL 50
                57899****************99988888883 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   4.5e-05     0.054     130     161 ..      19      50 ..      13      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.5e-05
       T2SSE 130 glilvsGgTgsGKttllyallkeinksderiv 161
                   il++Gg g GKttl+ al +  + ++e+++
  KIR63302.1  19 LKILIAGGFGAGKTTLVSALSEVRPLQTEEVL 50 
                 579**************999877666666655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   9.6e-05      0.11       1      20 [.      21      40 ..      21      73 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.6e-05
      AAA_18  1 IlltGtpGvGKttlakeLsk 20
                Il++G  G+GKttl  +Ls+
  KIR63302.1 21 ILIAGGFGAGKTTLVSALSE 40
                99****************98 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011      0.13      21      41 ..      20      40 ..       6      50 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
                EEEEEESTTSSHHHHHHHHHH CS
        TsaE 21 vilLeGdLGaGKTtlvrglak 41
                 il+ G  GaGKTtlv +l +
  KIR63302.1 20 KILIAGGFGAGKTTLVSALSE 40
                4899************99865 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014      0.17       5     133 ..      20     145 ..      17     159 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST.HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEE CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv.lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvd 102
                 +i i+g   +GKtTL+ +L +     +++   +++     D    E +   T+ +    +    ++ ++ l  tPG   F     + +  + gav++ d
  KIR63302.1  20 KILIAGGFGAGKTTLVSALSEVRPLQTEEVL-TGAGIGvDDLSGVEGKSTTTVAMDFGRIT-INEDLQVYLFGTPGQDRFWFLWDELAFGALGAVVLAD 116
                 789****************988777666333.33333313333344444444444433333.4588899999999999998887777777777777777 PP

                 TTTBSTHHHHHHHHHHHHTTTEEEEEEESCG CS
    GTP_EFTU 103 aveGvepqteevlrlalkegvpiivfiNKmD 133
                  +    +     +    ++++p++v +N  D
  KIR63302.1 117 TR--RLADCFPSIDYFEQRNIPFVVGVNCFD 145
                 66..455555666666666666666666665 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00014      0.16      19      38 ..      21      40 ..      14      51 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
  Zeta_toxin 19 illgGqpGAGKselaellkd 38
                il++G+ GAGK++l ++l +
  KIR63302.1 21 ILIAGGFGAGKTTLVSALSE 40
                89************999876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4    0.0002      0.24     103     137 ..      22      56 ..      17      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
                  EEECSTTSSHHHHHHHHCTT-----S--------- CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpelelktgevseklgrG 137
                  +++G  G+GK+tL+ al +   l+t+ev +  g G
   KIR63302.1  22 LIAGGFGAGKTTLVSALSEVRPLQTEEVLTGAGIG 56 
                  689999*************9999999997665544 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00029      0.34       1      46 [.      20      65 ..      20     139 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00029
                EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGG CS
         Roc  1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikg 46
                K+++ G  g+GKt+l++ + e +  ++e+  +g+ +   +++ ++g
  KIR63302.1 20 KILIAGGFGAGKTTLVSALSEVRPLQTEEVLTGAGIGVDDLSGVEG 65
                89*****************998888888877777776665544443 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00015      0.17       3      31 ..      21      49 ..      19      88 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
                EEEEESTTCCHHHHHHHHHCT--SS-EEE CS
        cobW  3 tvltGflGsGKTtLlnhllenraglklav 31
                ++++G  G+GKTtL+++l e r  +   v
  KIR63302.1 21 ILIAGGFGAGKTTLVSALSEVRPLQTEEV 49
                6799999********99986655555445 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00036      0.43       1      22 [.      21      42 ..      21      51 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00036
                EEEEESTTSSHHHHHHHHHCCS CS
         dNK  1 ivveGnIgaGKstlvklLskkl 22
                i + G  gaGK+tlv+ Ls+  
  KIR63302.1 21 ILIAGGFGAGKTTLVSALSEVR 42
                7899**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1458.81
//
Query:       KIR63303.1  [L=345]
Description: 3-carboxymuconate cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-97  326.9   0.0    1.8e-97  326.7   0.0    1.0  1  Lactonase  Lactonase, 7-bladed beta-propeller
    0.00026   20.9   1.3        4.5    7.5   0.2    3.7  3  NHL        NHL repeat
     0.0077   15.8   0.0        3.5    7.1   0.0    3.3  4  SGL        SMP-30/Gluconolactonase/LRE-like region


Domain annotation for each model (and alignments):
>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.7   0.0    3e-101   1.8e-97       2     343 ..       8     344 ..       7     345 .] 0.98

  Alignments for each domain:
  == domain 1  score: 326.7 bits;  conditional E-value: 3e-101
                 EEEEEGGS...SS.TEEEEEEEETTTS-EEEEEEEEESS---SEEE-TTSSEEEEEET.STTTEEEEEEEETTTTEEEEEEEEE.SSS-EEEEEE-TTS CS
   Lactonase   2 lyvGtytk...geskgiytlkldtetgkltplelvaelenPsyLalspdgktlYavnetgeeggvsafaidkdsgeltllnkvssegaspchlsvdedg 97 
                 + +G+yt    g+++gi +++ d  tg+ltpl+++a++ +Ps+L+ +p+  +lYa+ne  +eg+vsaf++++d g lt+l++  ++ga+pchl+v  dg
  KIR63303.1   8 VHLGCYTAasgGRGEGIVAARRDPVTGALTPLGTAAATPSPSFLTRHPTLPVLYAANEL-PEGEVSAFRVGPD-GDLTPLGSRGTGGAEPCHLAVTSDG 104
                 578*****9999**********************************************9.************9.9************************ PP

                 SEEEEEETTTTEEEEEEB.TTSEBESECEEEE.....SSTTT-SSTTEEEEEE-TTSSEEEEEETTTTEEEEEEE.-TTS-EEE.EEEEE-STT--EEE CS
   Lactonase  98 kllavAnYsggsvsvfpldadgslkeasqvlkhegsgpnperqesphaHsvvldpdgkfllvpDLGtDrvrvykldkatgklte.pasvklppgsGPRH 195
                  +l++AnY+ggs++vfpld  g+++e+s++  h g+gp+p+rqe++h+H+v   pdg  ll++DLGtD+v+ y+ld+a+g+l +  ++v+++pgsGPRH
  KIR63303.1 105 GHLVAANYGGGSLAVFPLDPTGAPGERSDLAVHAGHGPDPQRQEKAHCHMVSPAPDGGPLLAVDLGTDSVYRYDLDAASGRLVPrAPRVHAAPGSGPRH 203
                 *****************************999****************************************************99************* PP

                 EEE-TTSSEEEEEETTTTEEEEEEEE-TTTEEEEEEEEESS-TSS-S---EEEEEE-TTSSEEEEEETSSTEEEEEEE-TTT--EEEEEEEE-SSS.-- CS
   Lactonase 196 laFhpdgkiaYvvnELsstvsvfsydeatgaleelqtvstlpegftgknsaaeIrlspdgkflyvSnRgadsiavfavdeadgtltlveevstegkfPR 294
                 la hpdg+++++v+EL+ tv+++++  a+gal++  +v++   + +g+ +++eI++  dg+flyv nRg  +++vfa+  a+   + v ev+t+g++PR
  KIR63303.1 204 LARHPDGRRCWLVGELDATVTAYELT-ADGALHQRGRVDAS--TRAGHVQPSEIAVGVDGRFLYVGNRGVGTVSVFAL--AGELPEPVAEVETGGEWPR 297
                 **************************.************98..899999****************************9..77799************** PP

                 EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEESEEEESSSEEEEE CS
   Lactonase 295 dfaldpsgklllvanqksdnvtvferdaetGkLtelgkdievgepvcvk 343
                 +fal  +g++l+va+++ d v vf++da+tG  t++g+ +++++p+cv+
  KIR63303.1 298 HFAL--TGQHLYVADERADMVRVFRVDAATGVPTPVGEPVALPSPTCVL 344
                 ****..9****************************************96 PP

>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.1    0.0019        11       7      28 .]      98     120 ..      96     120 .. 0.93
   2 !    7.5   0.2   0.00075       4.5       3      28 .]     250     276 ..     249     276 .. 0.95
   3 ?    3.8   0.0     0.011        65       9      20 ..     301     311 ..     295     319 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0019
                 EEEE.TTTEEEEEECCCTEEEEE CS
         NHL   7 vavd.snGdiyVaDsenhrvqvF 28 
                 +av+ ++G+++ a+++  ++ vF
  KIR63303.1  98 LAVTsDGGHLVAANYGGGSLAVF 120
                 68999***********9999998 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00075
                 SEEEEEEE.TTTEEEEEECCCTEEEEE CS
         NHL   3 yPhGvavd.snGdiyVaDsenhrvqvF 28 
                 +P+ +av  ++  +yV +++  +v vF
  KIR63303.1 250 QPSEIAVGvDGRFLYVGNRGVGTVSVF 276
                 7999*********************99 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.011
                 EETTTEEEEEEC CS
         NHL   9 vdsnGdiyVaDs 20 
                 + ++ ++yVaD 
  KIR63303.1 301 L-TGQHLYVADE 311
                 5.689******5 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.29   1.7e+03     190     210 ..      99     120 ..      67     143 .. 0.61
   2 !    7.1   0.0   0.00059       3.5     143     191 ..     159     213 ..     155     265 .. 0.81
   3 !    5.8   0.0    0.0015       9.2     142     236 ..     207     305 ..     203     309 .. 0.81
   4 ?    2.8   0.0     0.012        72     144     169 ..     302     327 ..     296     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.29
         SGL 190 avDa.eGnvwvAvwgggkvvrf 210
                 av++  G++ +A +ggg +++f
  KIR63303.1  99 AVTSdGGHLVAANYGGGSLAVF 120
                 4444233334444444433333 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00059
         SGL 143 pdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkge......gepDGlav 191
                 pdg  l+ +D  t+++++yd+da +g+l  r + ++ ++g         pDG  +
  KIR63303.1 159 PDGGPLLAVDLGTDSVYRYDLDAASGRLVPRAPRVHAAPGSgprhlaRHPDGRRC 213
                 788889999999******************9999999999988888766998665 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0015
         SGL 142 spdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkgegepDGlavDaeGn.vwvAvwgggkvvrfdpdGkl...ieeiklpakrvtscaFgGpd 236
                  pdg+   l+  l  +++ay++ a+g   ++ rv a ++ g+ +p  +av  +G+ ++v   g g+v++f+ +G+l   ++e+++  +++   a+ G+ 
  KIR63303.1 207 HPDGRRCWLVGELDATVTAYELTADGALHQRGRVDASTRAGHVQPSEIAVGVDGRfLYVGNRGVGTVSVFALAGELpepVAEVETGGEWPRHFALTGQH 305
                 699999999999**********9999966666666999999988********99757999999***********9844456777777777777776655 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.012
         SGL 144 dgktlYlaDsltrkiwaydvdaeggk 169
                  g++lY+aD +++++ ++ vda +g 
  KIR63303.1 302 TGQHLYVADERADMVRVFRVDAATGV 327
                 6899*****************99984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       161  (0.00897987); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2574.79
//
Query:       KIR63304.1  [L=589]
Description: von Willebrand factor A [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-26   93.4  12.0    2.7e-26   92.8  12.0    1.3  1  SBP_bac_11     Bacterial extracellular solute-binding protein
    3.6e-15   56.7   0.0    5.7e-15   56.0   0.0    1.3  1  VWA            von Willebrand factor type A domain
    1.4e-09   38.5   0.0    3.4e-09   37.3   0.0    1.6  1  VWA_2          von Willebrand factor type A domain
      5e-05   23.3   0.0    0.00016   21.7   0.0    1.8  1  VWA_3          von Willebrand factor type A domain
  ------ inclusion threshold ------
       0.15   12.2   0.0       0.23   11.6   0.0    1.2  1  vWA-TerF-like  vWA found in TerF C terminus


Domain annotation for each model (and alignments):
>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8  12.0   7.4e-30   2.7e-26       1     224 [.      51     327 ..      51     332 .. 0.80

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 7.4e-30
                 .EEEE-SSTHHHHHHHHHHHHH...H...H---EEEEESSHHHHHHHH.............HHH....-SEEEESSH.HHHHHHHHGGGGG..GG-EEE CS
  SBP_bac_11   1 ltvaaagslaaalrelaaaFea...h...tgvkvevsaggsgklarqi.............adga..rpDvwipassawlellaaaglvqa..esavpl 76 
                 l vaaa++la+a++++aa+++a   +   t++ v+vs+ ++ ++a+++             a+g+   pDvw+p+ss+wl +l++ag+++   ++++++
  KIR63304.1  51 LAVAAAPELAPAVQAAAAQWMAdgaAvggTCIAVNVSESEPVDVAAAVagkhgvqlagvgqASGTavTPDVWVPDSSTWLLRLKNAGATAFapGNGASI 149
                 679*****************88443233455***************9999999999***9988878*********************999889****** PP

                 EEEEEEEEESTT-.......TT---SHHHHHHS.....S--EEEE--T-TTTTHH.HHHHGGG..--........HHHHHHHHHTEEEEESSH...... CS
  SBP_bac_11  77 assplviavpkgn.......pkkikgwadLlkp.....glklavadPttspsGlaalalleaa..ga........qellkalekkvvklgess...... 147
                 a+sp+v+avp++        p+k+ +w dLl++      ++ +++ Pt++++Gl  l  l+aa  ga         + l+al+ +   l+e+       
  KIR63304.1 150 ARSPVVVAVPEPVaetrfgwPEKKLTWTDLLRQvssskPIRAGIVEPTQDAAGLSGLLSLTAAasGAggdaqqatTGALRALATGRSALREDLlarfpr 248
                 *************99999999***********97776555**************888888877552243565233233333333333332222444444 PP

                 HHHHHHHHTTT-SEEEEEHHHHH..HSTTSSEEE..E--TTT--...EEEEEEEE..-TT--HHHHHHHHHTTSHHHHHHH CS
  SBP_bac_11 148 rqlltaveageadagivyeseakaaengdkleav..ylpeglnldpldypaavlk..kaakreaAraFlafLrspeaqail 224
                 ++ +ta+++g  +a+++ e   +++e+++++++   yl ++ +  pldyp+avl     ak++aA+ + + L++p  +++l
  KIR63304.1 249 SSDPTAIASGLGAAALSEEDVMAYNERKPPIPLAalYLEPSPM--PLDYPYAVLPgiEPAKQAAAKVLFEVLTTPGFRNRL 327
                 444555*******************888866665115555555..9********876779999*****9999999777766 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   1.6e-18   5.7e-15       4     173 ..     393     577 ..     391     579 .. 0.85

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 1.6e-18
                 EEEE-STTS.....CHHHHHHHHHHHHHHHHHHTBTTTTEEEEEEEESSS......EEEEEETTSHC.HHHHHHHHHHTGSGGGGSSC-HHHHHHHHHH CS
         VWA   4 fvlDgSgsm.....geenfekvkefikklveklevgpegtrvglvqfsse......vktefslndys.skeellsalnnlkysgggttntgkalkyale 90 
                  v+D+Sgsm     +++n ++ +  +    + l++  +++++gl +fs+e      +++ +++n  s +++ l + l +++ s+g+t  + + + +a++
  KIR63304.1 393 CVIDVSGSMkqpvpSANNATREQVTVAAASRGLNLFDDSWSIGLWTFSTElvgsldYRELVPINPLSsNRSRLEQGLATIRPSSGDTG-LYDTMLAAYK 490
                 59*******5555544444444444444455555699***********99999999*********77699**********99999999.9999999**9 PP

                 HHHHHHGTSSTTSEEEEEEEESS--CS.S..HTHHHHHHHH.....GCTEEEEEEEESSSHHHHHHHHHSSSSCHHCEEEESSHHHHHHHH CS
         VWA  91 klfkssagaRenakkviilltdGksnd.g..dpkeaaneak.....eqgikvfavGvgnadekelLnkiasepgeghvftvtdfeeleelf 173
                  +++  +    + ++ i+l+tdGk++d +  + ++ ++e+k     ++ ++v+++G+gn++ k++L++i + +g g +f  +d +++ ++f
  KIR63304.1 491 AVQEDWEP---GRVNSIVLFTDGKNEDaNgiSQQKLLAELKriadpDRPVQVVIIGIGNDVSKSELESITKVTG-GGNFVTEDPTKIGDIF 577
                 88887777...99************99668978888888888999999*************************9.8899999999888876 PP

>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   9.5e-13   3.4e-09       2     107 .]     392     511 ..     391     511 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 9.5e-13
       VWA_2   2 vfvlDtSgSmrngdy...gptrleaakdaveallkslpgd.rvglvtfsdg......pevliplt...kdkakilnalrnleakgggtnlaaaLqlark 87 
                 + v+D+SgSm ++     + tr +   +a+++ l+ ++++  +gl tfs++      ++ l+p +   ++++++++ l  +++++g+t l + +  a k
  KIR63304.1 392 LCVIDVSGSMKQPVPsanNATREQVTVAAASRGLNLFDDSwSIGLWTFSTElvgsldYRELVPINplsSNRSRLEQGLATIRPSSGDTGLYDTMLAAYK 490
                 679*********96644467777777777777777888778*********733333347777653444******************************* PP

       VWA_2  88 alkkrr.kgekrvivlitDge 107
                 a+++++  g+ + ivl+tDg+
  KIR63304.1 491 AVQEDWePGRVNSIVLFTDGK 511
                 *******************95 PP

>> VWA_3  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.4e-08   0.00016      58     151 ..     459     562 ..     389     564 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 4.4e-08
       VWA_3  58 aaelqealqkikelelslgasnlegaLkealrqp...akpgevrsvilltDgss.aq...geervsdlisrar...ekirfhalglgsslsaamlqaLA 146
                 ++ +++++q ++++ +s+g + l  ++ +a ++      pg+v s++l+tDg   ++   +++++ ++++r +   + ++++ +g+g+++s+  l+ + 
  KIR63304.1 459 SSNRSRLEQGLATIRPSSGDTGLYDTMLAAYKAVqedWEPGRVNSIVLFTDGKNeDAngiSQQKLLAELKRIAdpdRPVQVVIIGIGNDVSKSELESIT 557
                 478999***************9999988777644446889************98655577779999999985557788********************* PP

       VWA_3 147 easgG 151
                 +++gG
  KIR63304.1 558 KVTGG 562
                 *9999 PP

>> vWA-TerF-like  vWA found in TerF C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.3e-05      0.23       3     125 ..     390     521 ..     388     551 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.3e-05
  vWA-TerF-like   3 rVvlVlDasgSmsklykkgvvqavverllavaaq....lDddgelevwlfaskakr....lpdvtladleeyvkeeeegllelkklggvneeapvl 90 
                    r   V+D+sgSm++   +   ++  +  +a a++    +Dd  ++  w+f+++        + v ++ l++  ++ e+gl +++  +g +     +
     KIR63304.1 390 RMLCVIDVSGSMKQPVPSANNATREQVTVAAASRglnlFDDSWSIGLWTFSTELVGsldyRELVPINPLSSNRSRLEQGLATIRPSSGDTGLYDTM 485
                    6788********9987665433333333333332444489999********997652222334556666777788889988888777766666666 PP

  vWA-TerF-like  91 eevlekvrk..epaelptlvlFitDGgvkkkkeieka 125
                     +  + v++  ep ++  +vlF tDG +++++ i+++
     KIR63304.1 486 LAAYKAVQEdwEPGRVNSIVLF-TDGKNEDANGISQQ 521
                    5556665554668887776665.9****999988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4240.69
//
Query:       KIR63305.1  [L=494]
Description: polyprenyl glycosylphosphotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-65  218.2   0.0    9.5e-65  217.7   0.0    1.3  1  Bac_transf     Bacterial sugar transferase
      4e-07   30.2   1.3    9.8e-07   28.9   0.1    2.2  2  CoA_binding_3  CoA-binding domain


Domain annotation for each model (and alignments):
>> Bac_transf  Bacterial sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.7   0.0   1.1e-68   9.5e-65       1     183 [.     301     488 ..     301     489 .. 0.94

  Alignments for each domain:
  == domain 1  score: 217.7 bits;  conditional E-value: 1.1e-68
  Bac_transf   1 KrlfDivlsllalillsplllvialliklessggpvffkqkRvGkngkpFkiyKFRsmvkdaekkl..........gavvklkndpritkvGrflRkts 89 
                 K ++D  ++++al+ll+pll+vial+ikl++ +gpv+f+q RvG++g++F ++KFR+mv++a++ l          g ++k+++dpr+t+vGr+lRk+s
  KIR63305.1 301 KGFVDRSAAAVALALLLPLLAVIALAIKLDN-RGPVLFRQIRVGQGGREFGVFKFRTMVVNADALLaelttrnetdGLMFKMRDDPRVTRVGRVLRKWS 398
                 567999*************9********996.55******************************99********************************* PP

  Bac_transf  90 lDELPqlinVLkGdMslVGpRPelpeeveeeieeyeee.eerlkvkPGltGlaqvnsgrselsleeklelDleYvenlslllDlkillktvkavl 183
                 lDELPql nVL G+MslVGpRP lp+e    + +y+   ++rl vkPG+tGl+qv sgrs+ls+e+ ++lDl+Yven+sl+ Dl il+kt+ av+
  KIR63305.1 399 LDELPQLANVLLGQMSLVGPRPPLPSE----VARYDGDvARRLLVKPGMTGLWQV-SGRSDLSWEDGIRLDLYYVENWSLAADLTILWKTFGAVV 488
                 **************************4....55666665688*************.88899******************************9997 PP

>> CoA_binding_3  CoA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.11   9.9e+02      18      73 ..      35      89 ..      29     107 .. 0.69
   2 !   28.9   0.1   1.1e-10   9.8e-07       6     148 ..      89     237 ..      84     265 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.11
  CoA_binding_3 18 llrvlsawllvllllallsfslkdafSRlwlaywavvglvllivsrllvravlrrl 73
                   +l vl + +l++++l++ ++ ++d+      + ++vv  vll+ + l + +vlr +
     KIR63305.1 35 MLVVLDTAVLAVAVLIGYVARFGDEEPVGSKIPYVVVAPVLLLTWLLSL-KVLRCY 89
                   4555666666666677777777888777777888888888888776666.466655 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 1.1e-10
  CoA_binding_3   6 YqswrgrsllrlllrvlsawllvllllallsfslkdafSRlwlaywavvglvllivsrllvravlrrlrrngrne....rrvvavgggeelakqir 97 
                    Y+ + +    ++++rv sa l   + +a++ ++    +SR +la+ ++vg+++l v r+ +r+ l r r++gr       +v+ +++  el++q+r
     KIR63305.1  89 YDDRVLGYGADEYRRVGSASLRLAGGTAIAGYIADVGVSRGFLAISFAVGMLGLEVARFAARKRLHRARSRGRGWsrkvLVVGDTAHVLELVHQLR 184
                    5555555666677777777776667777788888888*************************99999999865442222444489999999***** PP

  CoA_binding_3  98 anpelgfrvv.gvfddr.ddarseevagvpvlgnladlveyvretrvdevyla 148
                    ++p +g+ vv + + d   +   + +  vpv+g+++ + e + +   d v ++
     KIR63305.1 185 REPYAGYHVVgACIPDAlLAPVPQRLGDVPVVGSFRGIPEAATAIGADTVAVT 237
                    ********99533334323333444469*****99999999998888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3404.79
//
Query:       KIR63306.1  [L=376]
Description: protein phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-32  111.9   1.6    6.2e-32  111.1   1.6    1.4  1  SpoIIE    Stage II sporulation protein E (SpoIIE)


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   1.6   3.4e-36   6.2e-32       2     192 ..     184     371 ..     183     372 .. 0.96

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 3.4e-36
                 TTEEEEEEEECSSSSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEESSSSEEEEETTSTEEEEE- CS
      SpoIIE   2 dgrlalvvgDvvGhGleAalimgllrsalrelataglepaevlkrlnralardleeeerfaTavlavydpstgkleyanaGhpppllvrpdggtkllla 100
                 ++rl+l    ++G G++A+++++l+  alr++ +agl +a+ ++ +++a+++ ++ e ++++a+l+++d++ g ++++ aG p  +l+r+ g++++++ 
  KIR63306.1 184 GHRLWLSTINGMGEGVQASVLTALATHALRNARRAGLGLADQAALADQAVYALHRGE-QHVSALLLELDLAGGVMTVVDAGSPRLVLLRG-GEVVEQPL 280
                 89*************************************************999999.********************************.******** PP

                 -SS--TTTSSST-EEEEEEE--TTEEEEEESCCCCSSSHHHHHHCCCHHCHHHHCT.....HCCHHHHHHHHHHHHTTSSSSS-EEEEEEEE CS
      SpoIIE 101 stglplGilpeadyetaelelepgdtlllyTDGvtEardsdgelfgkerllallasaegesleelldalveellelgsgeleDDitllvlrv 192
                 + + plG+++++dy++++++l+ gd+l++ +DGv+Ea   ++  +g+ +l ++l++   +++ + ++ l+ +l+++ +g+l DD+ +++l++
  KIR63306.1 281 EAQFPLGMFDGTDYREQQFTLRRGDRLFVLSDGVVEAT-GQNVRYGETALDRFLRRTGPMEPLDAVRSLIGDLRAFVAGDLVDDAVVVCLDW 371
                 *************************************9.777788999999****99888899999999999999999***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2847.61
//
Query:       KIR63307.1  [L=337]
Description: cobalamin-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-19   68.2   0.3    6.3e-19   68.2   0.3    2.0  3  B12-binding    B12 binding domain
    3.8e-09   36.9   2.2    1.3e-08   35.2   2.2    1.9  1  B12-binding_2  B12 binding domain


Domain annotation for each model (and alignments):
>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.66   5.9e+03      43      44 ..      48      49 ..      16      87 .. 0.63
   2 !   68.2   0.3     7e-23   6.3e-19       1     105 [.      99     199 ..      99     211 .. 0.87
   3 ?   -2.2   0.0      0.46   4.1e+03      48      48 ..     265     265 ..     228     305 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.66
  B12-binding 43 iv 44
                 ++
   KIR63307.1 48 VL 49
                 22 PP

  == domain 2  score: 68.2 bits;  conditional E-value: 7e-23
  B12-binding   1 ikvllatvggdlhplGlavlaaalrdagfeVqllganvenedivaairaekpdvvglSalltsqleavkelvellkrirprvkvvvGGahpsldpeet 98 
                  ++v+la+v+g++h l+++++a+++r+ag++V++lga v++  +v+ + ++ pd+v+lS++  s+l  + +++e+ +++  +v+vv+GG+++  d ++ 
   KIR63307.1  99 GHVVLACVEGEWHALAARIVAEVVRAAGWRVTFLGASVPARHLVSYLHQTGPDAVLLSCVQPSRLVRAGRTIEACRSA--GVPVVAGGPGFGPDGRW- 193
                  589***********************************************************************9887..99******996666666. PP

  B12-binding  99 leak.lgi 105
                    a+  g+
   KIR63307.1 194 --AAaVGA 199
                  ..333553 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.46
  B12-binding  48 r 48 
                   
   KIR63307.1 265 V 265
                  1 PP

>> B12-binding_2  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   2.2   1.4e-12   1.3e-08       5      73 ..      19      87 ..      15      88 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.4e-12
  B12-binding_2  5 lhwaivhgdkegieelidealaqgsaavdvlndvllpamkeVGdlfgagelflpqvllsaevmkkavah 73
                   ++ ++ + d  +++el+  +l++g ++ dvl dv++ a +e+G ++ ag+++++q++ +++v + +va+
     KIR63307.1 19 YLACLDAADHPAAVELALDLLDAGASVADVLVDVVAVAQREIGLRWSAGRWSVAQEHAATHVSELVVAA 87
                   55666677889999************************************************9988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2467.26
//
Query:       KIR63308.1  [L=421]
Description: ROK family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-41  141.8   0.0    4.4e-41  141.3   0.0    1.1  1  ROK        ROK family
    3.7e-05   23.5   1.0    3.7e-05   23.5   1.0    3.0  3  MarR_2     MarR family
    0.00012   21.9   2.1    0.00072   19.3   0.1    2.8  2  HTH_IclR   IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.059   13.3   0.0       0.13   12.2   0.0    1.6  1  HTH_Crp_2  Crp-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.3   0.0   9.8e-45   4.4e-41       2     288 ..     101     402 ..     100     407 .. 0.89

  Alignments for each domain:
  == domain 1  score: 141.3 bits;  conditional E-value: 9.8e-45
                 EEEEE-SSEEEEEEEETTS-EEEEEEE.....EEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCCCCTTHHHHHHHH CS
         ROK   2 igidiGgtkialalvdeegeilarekv.....etptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitwenfdlvekleer 95 
                 +g++i ++++a+++vd +ge++++        + +  +    lv   ae+ ++ae +   l++v++++pGl+  + g +  +pn++w+++ + e l+ +
  KIR63308.1 101 LGLEINVDYLAACVVDLAGEVRHHTVRradlrPVSPADALARLVTLAAEARADAEGQGLTLAGVALAVPGLV-GDAGLVRLAPNLGWRDVAVPELLADH 198
                 5899999**************98766656666444455555566777777788888888999**********.99*********************999 PP

                 HTS........-EEEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHH CS
         ROK  96 lnv........pvevenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqgClEtlasgralek 186
                   +        p++v+n++n aa++E   +   +  +++ v+   G+GaG++++g+l++G +G +ge+GHi+++p+g  c CG +gClE++a  +a+ +
  KIR63308.1 199 PPLagpvpgvpPLVVDNEANLAAVGELH-ADPTGPASFLHVSGEVGIGAGIVLDGALFRGVRGWSGEIGHIPVQPQGRPCRCGGRGCLEQYAGQEAVLA 296
                 65433334444789************99.7888999999************************************************************ PP

                 CHTC....CGTTS-HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHH.HHHHHHHHHCCTTTTCCCT-EEEE-S-ST CS
         ROK 187 raqq....kgekleakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadkll.eairklvkkylnkklevpvveivaaklgd 280
                 +a+      +++  a+ +  la  g + a +++ + +++l+ a+a ++nl+d + +vlgGg       l +a+ ++v+++++ + ++pv +++++ lg 
  KIR63308.1 297 AAGLdradLPADTAAARLADLAAAGHPAALAALAEAGQALGVAVAGVVNLLDLDTVVLGGGYALLTPWLrPAVLAEVSRRVLTAGWAPV-TVRPSTLGP 394
                 *99955555566667778999*******************************************************************9.6******** PP

                 THHHHHHH CS
         ROK 281 kagllGaa 288
                 +a+++Gaa
  KIR63308.1 395 EAAVVGAA 402
                 *******8 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   1.0   8.3e-09   3.7e-05      10      59 ..      33      82 ..      30      86 .. 0.89
   2 ?   -2.5   0.0       1.1   5.1e+03      47      58 ..     174     185 ..     174     187 .. 0.81
   3 ?   -1.0   0.1      0.37   1.7e+03      35      50 ..     307     322 ..     298     348 .. 0.69

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 8.3e-09
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE.ESSSS CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr.pgpeD 59
                vL+ ++++p++  + +++a+ +gl++++vs ++++L a  Lv ++ p+p++
  KIR63308.1 33 VLGRIAAAPRP-PSRADVAASTGLTRATVSAVVDDLIAGRLVAESePAPRA 82
                89999999988.5*****************************888677665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
                 HTTSEEEEESSS CS
      MarR_2  47 aaGLverrpgpe 58 
                 +aGLv+  p+++
  KIR63308.1 174 DAGLVRLAPNLG 185
                 59****999865 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.37
                 HHHHHHHHHHHHHTTS CS
      MarR_2  35 ksavsrilkrLvaaGL 50 
                   ++  +l++L aaG+
  KIR63308.1 307 ADTAAARLADLAAAGH 322
                 5555566666666663 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   1.6e-07   0.00072       8      49 ..      33      74 ..      29      77 .. 0.91
   2 ?    0.4   0.1      0.13   5.6e+02       9      22 ..     326     339 ..     324     341 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.6e-07
                HHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  8 iLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyve 49
                +L  +a+ap++ + +++A+ tgl+++tv+  +  L+  ++v 
  KIR63308.1 33 VLGRIAAAPRPPSRADVAASTGLTRATVSAVVDDLIAGRLVA 74
                8999***************************99999999886 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.13
                 HCT-CTTBSS-BHH CS
    HTH_IclR   9 Ldalaeapqeltls 22 
                 L alaea+q+l+++
  KIR63308.1 326 LAALAEAGQALGVA 339
                 899*******9875 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     3e-05      0.13      21      48 ..      43      70 ..      28      78 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3e-05
                EHHHHHHHHHTTSSHHHHHHHHHHHHHT CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkre 48
                p ++++ A+  Gltr tvs +  +L   
  KIR63308.1 43 PPSRADVAASTGLTRATVSAVVDDLIAG 70
                889*****************99988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3092.19
//
Query:       KIR63309.1  [L=395]
Description: xylose isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-28   98.9   0.2    3.7e-28   98.4   0.2    1.2  1  AP_endonuc_2  Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
      0.046   13.8   0.0      0.097   12.8   0.0    1.5  1  MIT           MIT (microtubule interacting and transport) dom


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.2   4.1e-32   3.7e-28       3     210 .]      42     265 ..      40     265 .. 0.93

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 4.1e-32
                   HHHHCT-SEEEEECCTCSHHHHC...HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHC....HTTCS.HHHHHHHHHHHHHHHHHHTBSEEEEEB CS
  AP_endonuc_2   3 aaaeaGfdgvElfgrdlvpvsel...sdeelrelrkaldelglriaslslftrfgypded....erear.reesvdalkraielaaaLGapllvlhp 91 
                   ++ae+G+ g+ ++ +dl p+ ++    d++++++rkalde+gl +++++++ + + ++ d      +++ r+ +++++ r i+laa+LGa++ v++ 
    KIR63309.1  42 KLAELGAYGITFHDDDLIPFGADsaaRDAQIARFRKALDETGLVVPMVTTNLFTHPVFKDggftSNDRDvRRYALRKVLRNIDLAAELGAKTYVMWG 138
                   799******************99*************************************87654444499*************************9 PP

                   CC..GBCTTTSGHHHHHHHHHHHHHHHHHHHHHHT..SEEEEE--TTTTSSSTC....HHHHHHHHHHTTTT.EEEEEEHHHHHHHTTTHHHHHHHH CS
  AP_endonuc_2  92 Gt..agagpkgseeeawerlaeslneladyaekeg..vklalEtlagsgvelgd....eelarlldavdspn.vgvclDtgHlliaeedvddalral 179
                   G+    +   +++++a++r++e+++ l++y  ++g   ++a+E+ ++++  ++      +++++++ + +p  vg++  +gH ++a+ ++++ +++ 
    KIR63309.1 139 GRegSEYDLAKDIRAALDRYREGVDLLCEYVVDRGydLRFAIEPKPNEPRGDILlptvGHALAFISTLARPEmVGLNPEVGHEQMAGLNYAHGIAQA 235
                   97664455666777******************99988************99999******************************************* PP

                   HGGEEEEEE.EESSTTTTSSTTEESTTSSSS CS
  AP_endonuc_2 180 adrikhvHikDakgdlgagrdrhvpigeGei 210
                       k++H+ D +g++g + d+ + +g+G++
    KIR63309.1 236 LWQGKLFHL-DLNGQRGIKYDQDLVFGHGDL 265
                   *********.*******************85 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.1e-05     0.097      10      37 ..     141     168 ..     139     178 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.1e-05
         MIT  10 kAveeDnagnyeeAlelYkealelLlqa 37 
                 +  e+D a+++ +Al+ Y+e+++lL + 
  KIR63309.1 141 EGSEYDLAKDIRAALDRYREGVDLLCEY 168
                 5679********************9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2649.28
//
Query:       KIR63310.1  [L=480]
Description: xylulose kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-42  144.8   0.0    4.2e-42  144.4   0.0    1.1  1  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom
    5.5e-26   91.5   1.6    1.3e-25   90.3   1.6    1.7  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
  ------ inclusion threshold ------
      0.042   12.0   0.2      0.059   11.6   0.2    1.1  1  HSP70     Hsp70 protein


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.4   0.0   7.1e-46   4.2e-42       2     245 .]       4     247 ..       3     247 .. 0.94

  Alignments for each domain:
  == domain 1  score: 144.4 bits;  conditional E-value: 7.1e-46
                 EEEEEEESSEEEEEEEE.TTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEESSEEE-TT CS
      FGGY_N   2 ilglDcGttstkaivld.ekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpLynailwk 99 
                 + g+D +t+s k ++ d e+g +v s++a++      ++  e dp+++w+al +a+++++  a     +++a++++gq++g+v lD  ++++++a+lw+
  KIR63310.1   4 VAGFDSSTQSCKLVIRDaETGALVRSGRAAH------PDGTEVDPAAWWAALEAAVAQAGGLA-----DVAAVSVAGQQHGMVCLDASGEVVRPALLWN 91 
                 679************************9876......57788*****************9998.....******************************* PP

                 --TTHHHHHHHHH.....TTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT.....--EEEHHHHCTTTSEETTTTEE CS
      FGGY_N 100 drrtaeiveklke.....egnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtg.....qfvtdvtnasesmlfnikklew 188
                 d+r+a+ +  l e     e +   ++   g+v  ++ft++kl+Wl+++ep  + +++++ l++d+L+wrL g     +  td+++as+++++  +++e+
  KIR63310.1  92 DTRSAGAAADLIEeagggEAGGRFWADAVGVVPVASFTATKLRWLARHEPANADRVAAVCLPHDWLTWRLAGapgldALRTDRSDASGTGYWSPATGEY 190
                 ******999998855444455678**************************************************9999********************* PP

                 -HHHHHHTT--GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 189 deellailgipeelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                    ll+ +   +   P ++ +++ +g+l p + a+ G   g +  +g+gD++aaa+G
  KIR63310.1 191 RFDLLERAFGRRLEVPVVLGPTQTAGALDPAALAAGGGPGGALLGPGAGDNAAAAFG 247
                 *****998888889*****************9999999******************9 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   1.6   2.1e-29   1.3e-25       2     196 ..     256     437 ..     255     439 .. 0.89

  Alignments for each domain:
  == domain 1  score: 90.3 bits;  conditional E-value: 2.1e-29
      FGGY_C   2 kvslGTssflllvgtkpvisehglltpvagedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpafsglra 100
                 +vs+GTs +++ v++ p  +  g  + +a  d  + y+   ++  a  +++     lg+     d +   ++la    ++a + a g+v+vp++ g+r+
  KIR63310.1 256 VVSIGTSGTVFSVADAPTADPTGTVAGFA--DVTGRYLPLVCTLNAARVLDAAATMLGV-----DLDTL-SDLA----LSAPPGADGLVMVPYLEGERT 342
                 7899**************99999999999..5677777777777777776766666666.....33333.6666....699****************** PP

      FGGY_C 101 pywdpdargtitglssstt.lahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilAav 196
                 p+ +p+a g++ gl+ +t+ +ah+arAa+e+   +l+++l+al+++ g   +r++++GGg+++ ++++++ +++g+pV++p++ e +a GaA  Aa+
  KIR63310.1 343 PN-RPSATGSVHGLTLRTStPAHLARAAVEGMLCALADGLDALTAQ-GCRAERVILVGGGARSAAVRRIAPQVFGRPVVVPPPGEYVADGAARQAAW 437
                 *5.**************999**************************.************************************************98 PP

>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   9.8e-06     0.059     328     375 ..     392     438 ..     364     445 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.8e-06
                 SEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHH CS
       HSP70 328 devvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvl 375
                 + v+lvGG +R  +v+ +  ++fg++      p e va GAA qa+ l
  KIR63310.1 392 ERVILVGGGARSAAVRRIAPQVFGRPVVV-PPPGEYVADGAARQAAWL 438
                 68**********************97764.589***********9966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3420.56
//
Query:       KIR63311.1  [L=362]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-36  125.3   3.4      2e-35  122.6   0.2    2.8  3  Peripla_BP_3  Periplasmic binding protein-like domain
    5.3e-25   88.4   0.0    6.9e-25   88.0   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    3.1e-17   62.1   2.9    3.5e-17   61.9   0.8    2.3  2  LacI          Bacterial regulatory proteins, lacI family
    6.3e-10   39.0   0.0    1.5e-09   37.8   0.0    1.6  1  Peripla_BP_4  Periplasmic binding protein domain
     0.0076   16.6   1.3     0.0076   16.6   1.3    2.4  2  HTH_31        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.037   14.1   0.1      0.076   13.1   0.1    1.5  1  HTH_3         Helix-turn-helix
       0.14   12.1   1.5        0.7    9.9   0.1    2.7  3  HTH_Crp_2     Crp-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.3   3.4e+03      31      57 ..      79     105 ..      51     135 .. 0.61
   2 !  122.6   0.2   7.7e-39     2e-35       1     155 [.     169     321 ..     169     330 .. 0.89
   3 ?    2.2   0.0     0.076     2e+02     153     166 .]     342     356 ..     334     356 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.3
                   HHHHHHHTTSSS-EEEEE-S-SS-SSH CS
  Peripla_BP_3  31 rgfrqaleelglplnetvvaaddpaaa 57 
                   ++++++l+e g++l  +   +++ + +
    KIR63311.1  79 EAVEETLHESGYDLLLYNLGGRERTRQ 105
                   555566666666655555554444333 PP

  == domain 2  score: 122.6 bits;  conditional E-value: 7.7e-39
                   ..HHHHCS--EEEEEE..--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEESSCCHHHHHHHHHCC CS
  Peripla_BP_3   1 vehLvelGhrriafig..gegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalPtAviaasDelAlgvlqalre 95 
                   ++hL++lGhrria i+  ++++   +++ +r+rg+++al+++g+++++++  + +++++++ +a +  + l+ +++PtA++aa De+A+g+++alr+
    KIR63311.1 169 TRHLLDLGHRRIAHISgdPDDELAFTTHLDRRRGYQEALRSAGIEPDPCLDVESQFTIDGGEQATI--ELLARGEPPTAIFAACDEMAMGAMSALRD 263
                   68**************888888889999************************************88..33355559********************* PP

                   TT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEE CS
  Peripla_BP_3  96 aglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvl 155
                   aglrvP+d+svig+dd +l++++   l+t++qp++e Gr aa++lld l g++ pp+   
    KIR63311.1 264 AGLRVPQDVSVIGIDDHDLSGVL--GLSTIAQPAAEQGRLAARILLDPLGGRDLPPPAGP 321
                   ***************98885554..58**********************99999887644 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.076
                   EEE.E--EEE--GGG CS
  Peripla_BP_3 153 qvl.lppelveReSt 166
                     l lp++lv+R+St
    KIR63311.1 342 APLvLPTRLVVRDST 356
                   44549*********8 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.0   2.7e-28   6.9e-25       2     223 ..      60     279 ..      59     313 .. 0.83

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 2.7e-28
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHHHHH..HHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS- CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedlakai..dllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvP 96 
                    ++ +++p  +  ff ++v++++++++e g+d+ll + g+ e + +++     + k++d++ +     +  ++ a    ++p + ++  +  p g P
    KIR63311.1  60 ATVAVIVPRITRWFFGTVVEAVEETLHESGYDLLLYNLGGRERTRQRVlgTANLHKRVDAVMLVATPLRRAELAALTVLDLPGVTISSGSGVP-GWP 155
                   57999****************************************77622344679****99885555559**********************.*** PP

                   EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEE.E-TTS...HHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE-S CS
  Peripla_BP_1  97 cvipddtqageestqkLiaeghkrpialleg.pesal...takervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..Peidaivai 187
                   cv+ dd  a+  +t++L+  gh+r ia ++g p+ +l   t   r+ G+ +al+ aG e       +   +i ++++a  ell ++  P+  ai a 
    KIR63311.1 156 CVRIDDVAAARTATRHLLDLGHRR-IAHISGdPDDELaftTHLDRRRGYQEALRSAGIEPDPCLDVESQFTIDGGEQATIELLARGepPT--AIFAA 249
                   ************************.*888872566665555668999***********444444445566999**************999..***** PP

                   SHHHHHHHHHHHHHTT.--GGGEEEEEESSGGGHHH CS
  Peripla_BP_1 188 ndeaalGavlalkkeGrlkikeevdsfiesvvvydg 223
                    de+a+Ga+ al+ +G l+ +++v     sv + d 
    KIR63311.1 250 CDEMAMGAMSALRDAG-LRVPQDV-----SVIGIDD 279
                   ****************.*******.....4444443 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.8   1.4e-20   3.5e-17       1      44 [.       3      46 ..       3      48 .. 0.96
   2 ?   -2.3   0.0       1.6   4.1e+03      29      35 ..     102     108 ..     100     121 .. 0.61

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 1.4e-20
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB- CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYi 44
                +i+DVArlAGVS+aTVSr L++ ++Vs++tr rV+aa+e+l+Y+
  KIR63311.1  3 KIDDVARLAGVSTATVSRALRGLPTVSAATRRRVLAAAEQLQYA 46
                699****************************************7 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
                 HHHHHHH CS
        LacI  29 etrerVe 35 
                  tr+rV+
  KIR63311.1 102 RTRQRVL 108
                 5677765 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   5.8e-13   1.5e-09       1     254 [.      62     310 ..      62     314 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 5.8e-13
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHH.HHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-C CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqieda.iakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsger 96 
                   ++v+v+  +  ff ++ e++ee + e g++  + ++ ++  ++ + ++ +a + k vd++++ ++    ++  l++++    p v++ s    + ++
    KIR63311.1  62 VAVIVPRITRWFFGTVVEAVEETLHESGYDLLL-YNLGGRERTRQRVLGTAnLHKRVDAVMLVATPLRRAE--LAALTVLDLPGVTISSG--SGVPG 153
                   678888888889999**************9999.6888888888888888889999**9999977765555..66666677888899999..99*** PP

                   EEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHH....HHHHHHHHHHHH-TTCEECC..EEESTTTCHHHHHHHHHHHHHTT.TECE CS
  Peripla_BP_4  97 layvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnae....eriegfrkvlkeypgikiva..evaganwdaekaqqalealltan.pldg 186
                     +v +d  aa++++ + l++        ++ ++G+p+d  a     +r  g  ++l+   gi+  +  +v+  + + + + qa+ +ll++  p  +
    KIR63311.1 154 WPCVRIDDVAAARTATRHLLDLGHR---RIAHISGDPDDELAFtthlDRRRGYQEALRS-AGIEPDPclDVES-QFTIDGGEQATIELLARGePPTA 245
                   *********************9995...6*********98777666799*******999.5555555433334.9***************66589** PP

                   EEESSCCHHHCHHHHHHHTTT.TSTEE.EEEES-HHHHHHHHHTTSSE.EEEE--HHHHHHHHHHHHHHHH CS
  Peripla_BP_4 187 ilaandgmaegalealeaagl.agkvv.vtgqDatpealeaikdGtid.atvaqdpyelgyaavelavall 254
                   i+aa+d+ma+ga++al++agl  +++v v+g+D  + +   +    +  +t+aq++ e+g+ a++++++ l
    KIR63311.1 246 IFAACDEMAMGAMSALRDAGLrVPQDVsVIGIDDHDLS--GV----LGlSTIAQPAAEQGRLAARILLDPL 310
                   *********************74444237776655543..33....2224889999999999988887655 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.3     3e-06    0.0076      18      53 ..       5      39 ..       3      54 .. 0.80
   2 ?   -0.8   0.1       0.8     2e+03      15      25 ..     127     137 ..     100     146 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3e-06
      HTH_31 18 eevAerlgvsestlsrlEqGrrgrpspavlealara 53
                ++vA+++gvs +t+sr  +G  + +s a+ ++++ a
  KIR63311.1  5 DDVARLAGVSTATVSRALRGLPT-VSAATRRRVLAA 39
                79********************6.977765555543 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.8
      HTH_31  15 LsqeevAerlg 25 
                 L+++e+A+++ 
  KIR63311.1 127 LRRAELAALTV 137
                 88888888875 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1     3e-05     0.076      13      49 ..       5      44 ..       1      48 [. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3e-05
                HHHHHHHTSSHHHHHHHHTT...SSCSBHHHHHHHHHHHT CS
       HTH_3 13 eeLAeklGvsrstisriEnG...ernPsletlkklakaLg 49
                 ++A+++Gvs +t+sr  +G    ++ + +++++ a+ L+
  KIR63311.1  5 DDVARLAGVSTATVSRALRGlptVSAATRRRVLAAAEQLQ 44
                79******************88888888888888777776 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00027       0.7      25      45 ..       5      25 ..       3      43 .. 0.88
   2 ?   -0.8   0.0      0.61   1.6e+03      16      30 ..     119     135 ..      93     140 .. 0.71
   3 ?   -3.7   0.0         5   1.3e+04      20      30 ..     173     183 ..     165     185 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00027
                HHHHHHTTSSHHHHHHHHHHH CS
   HTH_Crp_2 25 eelAsmlGltretvsrilseL 45
                ++ A++ G++  tvsr+l+ L
  KIR63311.1  5 DDVARLAGVSTATVSRALRGL 25
                589***************977 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.61
                 C..EEEEEHHHHHHHHH CS
   HTH_Crp_2  16 g..eielpltqeelAsm 30 
                 +   +  pl ++elA++
  KIR63311.1 119 AvmLVATPLRRAELAAL 135
                 34456679999999987 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 5
                 EEHHHHHHHHH CS
   HTH_Crp_2  20 lpltqeelAsm 30 
                 l+l ++ +A++
  KIR63311.1 173 LDLGHRRIAHI 183
                 55556666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2583.49
//
Query:       KIR63312.1  [L=321]
Description: sugar ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-17   62.3  16.7    4.7e-17   62.3  16.7    2.3  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.27    9.4   7.2      0.057   11.6   3.9    1.4  1  YfhO          Bacterial membrane protein YfhO


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   4.4    0.0033        29      11      40 ..      28      57 ..      19     122 .. 0.63
   2 !   62.3  16.7   5.2e-21   4.7e-17       4     182 ..     117     313 ..     114     316 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0033
  BPD_transp_1 11 nrnkkldkllrpliivllslPsfvlaillv 40
                  + n+++  l++++i v++++P+f l++  +
    KIR63312.1 28 RLNSRTATLISIVIAVFWTIPTFGLFVSSF 57
                  78999******************9877655 PP

  == domain 2  score: 62.3 bits;  conditional E-value: 5.2e-21
  BPD_transp_1   4 lGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf.............vilsilghlilpviillllsaapyvrlirraalrslpkdlv 84 
                   +++laa      n++++++ ++ i++l+ +P    +++l+ +f             +++ +  + +  v ++ + +a+p+++++  +++ +lpkdl+
    KIR63312.1 117 FASLAAyalAWINFRGRDWAYIAIFALQIVPLQMALVPLLKFFstgvtlggvtlmpAWDLVDEQKFAQVWFAHTCFALPFAVFLLHNFIAQLPKDLM 213
                   66777777779***********************8888886779***********7777666666666***************************** PP

  BPD_transp_1  85 eaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG....lgtllleailgydyseis..nggvlalviavlllnlvadil 175
                   eaar++Ga++ +ifr++vlP++ p ++++ i++f +++++ ++++++++++     l+ +l e   ++     +    ++  + +++++ ++v+  l
    KIR63312.1 214 EAARVDGATHPKIFRTIVLPLITPALAAFGIFQFLWVWNDLLVALIFAGGSSetapLTVRLAEMAGSRG----NewQRLTSGAFVSIVVPLIVFLSL 306
                   ************************************************888755443333333333333....243246666666666667777777 PP

  BPD_transp_1 176 qrlldpr 182
                   qr++ + 
    KIR63312.1 307 QRYFVRG 313
                   7777765 PP

>> YfhO  Bacterial membrane protein YfhO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.9   6.4e-06     0.057     212     297 ..      26     114 ..      10     130 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.4e-06
        YfhO 212 kqllrfiissllagllsavlllPtvlgllsskrasae..at...isltfdinpldllsklligtfdfeqmgslpniyvgllpllllilyFv 297
                 ++ l+  +++l+++++++++ +Pt+  ++ss r+++e  +t   +++t +++ l+ ++++l+g ++  ++g+l+n ++  l++++  ++F 
  KIR63312.1  26 RKRLNSRTATLISIVIAVFWTIPTFGLFVSSFRPENEikTTgwwTFFTNPQFTLENYQEVLFGRSS--SSGQLANYFINSLAITIPSVLFP 114
                 5555566789************************9996433222467889999**********777..45779999999888887777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2517.32
//
Query:       KIR63313.1  [L=349]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-19   68.2  13.0    7.5e-19   68.2  13.0    2.8  3  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.015   15.6   2.1      0.015   15.6   2.1    2.9  3  Wzz           Chain length determinant protein


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1     0.075   6.7e+02     155     182 ..      16      43 ..       2      46 .. 0.69
   2 ?   -3.8   7.6      0.99   8.9e+03      22      44 ..      67     120 ..      47     148 .. 0.62
   3 !   68.2  13.0   8.4e-23   7.5e-19       2     174 ..     139     339 ..     138     347 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.075
  BPD_transp_1 155 nggvlalviavlllnlvadilqrlldpr 182
                     g++a++++v  l+l++d++  ++++r
    KIR63313.1  16 LYGLIAFAVVVGGLLLLLDAVPSYFARR 43 
                   4677778888888888888877777776 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.99
  BPD_transp_1  22 pliivllslPsfvlaillvlvf...............................v 44 
                   +++ +++ lP ++l+++ ++v                                +
    KIR63313.1  67 GMFAFFFLLPAVLLLMIGLVVPairttllsfmdggsrnwvgldnyawmfsdssI 120
                   567788889999999997755467777777777777777777777666655432 PP

  == domain 3  score: 68.2 bits;  conditional E-value: 8.4e-23
  BPD_transp_1   2 illGilaa.lnrnkkldkllrpliivllslPsfvlaillvlvf.........................vilsilghlilpviillllsaapyvrlir 72 
                   + +G+l a +  + ++  +   li++++++ ++  ai++ +v                           +l       l +i+++++ +a++++++ 
    KIR63313.1 139 TAFGLLYAvMVDKARFESVAKSLIFMPMAISFVGAAIIWKFVYayrgegqdqigllnqivvslggepkQWLLESPLNTLLLIVIMVWIQAGFAMVVL 235
                   579999999999*******************999999977666889*********************9888888899999***************** PP

  BPD_transp_1  73 raalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis......nggvlalvi 163
                   +aa++++p d veaar++G+++wq+f+++++P++ p +i  ++  +++ l+ + ++ + +     g+  +++i + +y+++        g++la+ +
    KIR63313.1 236 SAAIKAIPADIVEAARLDGVTPWQMFWQITMPSIRPALIVVVVTLSIATLKVFDIVRTAT----NGNYDTSVIANEMYNQAFrygqngQGSALAVFL 328
                   ************************************************************....666666666666666666667777666666666 PP

  BPD_transp_1 164 avlllnlvadi 174
                   +vl++ lv++ 
    KIR63313.1 329 FVLVIPLVIYQ 339
                   66666666554 PP

>> Wzz  Chain length determinant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.31   2.8e+03      21      43 ..      19      41 ..      13      43 .. 0.75
   2 ?   15.6   2.1   1.7e-06     0.015       8      45 ..     120     158 ..     118     176 .. 0.92
   3 ?   -4.0   2.3         2   1.8e+04      17      34 ..     218     235 ..     215     242 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.31
                XXXXXXXXXXXXXXXXXXX-EEE CS
         Wzz 21 lvtllfallaviyaflatpkYta 43
                l++++++++++++++ a p Y a
  KIR63313.1 19 LIAFAVVVGGLLLLLDAVPSYFA 41
                67788888888888999888855 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.7e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX-EEEEE CS
         Wzz   8 LlsvLwkrkklIilvtllfallaviya.flatpkYtata 45 
                 +++vL+   ++++lv+l++++++++ya ++ + ++++ a
  KIR63313.1 120 IIRVLINTLVWVLLVPLVATAFGLLYAvMVDKARFESVA 158
                 899************************999999998876 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 2
                 XXXXXXXXXXXXXXXXXX CS
         Wzz  17 klIilvtllfallaviya 34 
                 +lI++++ + a +a++++
  KIR63313.1 218 LLIVIMVWIQAGFAMVVL 235
                 466666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2277.02
//
Query:       KIR63314.1  [L=448]
Description: sugar ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-19   68.5  12.3    1.4e-18   67.9  12.3    1.2  1  SBP_bac_1  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9  12.3   7.7e-23   1.4e-18      10     305 ..      70     359 ..      64     380 .. 0.85

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 7.7e-23
                 HHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEE.CGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE.EE CS
   SBP_bac_1  10 lqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviav.dndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkilds.kv 106
                 l++   k+fe  ++gi++  e +  g++  +l +++ +G++p D++++ +++ ++r+a+ag l   ++++ka + +            + +++l + +v
  KIR63314.1  70 LDESW-KQFED-CTGIEIDHEGS--GEFEAQLGVRVDGGNAP-DLAFIpQPGLVKRFADAGKLKAASADTKAMAEQN-----------YSADWLKYgTV 152
                 56666.78877.98888888776..***************88.****************************996444...........77888888888 PP

                 ...ES.EEEE.E.EEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCT...HCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT...HHCSHHH CS
   SBP_bac_1 107 ...ly.vPly.a.argliYNkdlfekagldppwtWdelveaakklkekgkkp...iggarggsasgtayyfalalakslggkvfdkdgg...gldnpeg 193
                     y  Pl     + ++Y+++ f++ g ++p+tWdel+++  k+ ++g kp   ++ +  ++++  +++    ++    ++v+d++      +++p+ 
  KIR63314.1 153 ngqFYgAPLGsNvKSFVWYSPKTFKEKGWTVPTTWDELIALSDKIAASGTKPwcaGIESQDATGWPATDWVEDMMLRTQTPEVYDQWTThgiPFNDPKV 251
                 999999****99*******************************************************************************86666666 PP

                 HS.HHHHHHHHHHHHHHHHH.HHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECE..EBETTTTSEE..EEE CS
   SBP_bac_1 194 vt.aatylvklyavanltke.lkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvapl..Pagkggkpgi..lga 286
                  +  +++++ l+ +++++ +  + k+ ++++ ++a + +++G++a+    +++          ++ +++  k+ e+ +v+++  Pa++++k++    g+
  KIR63314.1 252 AEaVDKAGTILKNEKYVNGGfGGVKSISTTSFQEAGTPITTGKCALHRQASFY----------ANQWPQGTKVAEDGDVFAFyfPAIDPAKGKPvlGGG 340
                 6675555555555555555505556778899***************6666666..........788888888888888888888***********9999 PP

                 EEEEEBTTCSTHHHHHHHH CS
   SBP_bac_1 287 yglaipkgsknpeaAkkFl 305
                   +a +++ ++ +a++ +l
  KIR63314.1 341 EFVAAFADRPEVQAVQTYL 359
                 9999999999977777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3234.14
//
Query:       KIR63315.1  [L=257]
Description: metalloendopeptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-25   88.3   1.4      3e-25   88.3   1.4    1.8  2  Peptidase_M23  Peptidase family M23
    1.4e-06   28.5   1.3    1.4e-06   28.5   1.3    2.7  3  SH3_3          Bacterial SH3 domain


Domain annotation for each model (and alignments):
>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   1.4   3.3e-29     3e-25       4      94 ..      53     147 ..      50     149 .. 0.88
   2 ?   -1.9   0.1      0.45   4.1e+03      17      24 ..     200     207 ..     173     229 .. 0.57

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 3.3e-29
                    SSEEEEET..TT-EEEESSSEEEEEEEE..ETTTEEEEEEEECTCEEEEEEEESEESS-TTEEE-TTCEEEEEBSTSSCSSSEEEEEEEETTEEE CS
  Peptidase_M23   4 kGidiaap..kgtpVlAaadGtVvfagk..kegyGnvviidhgdgystlyahlskisvkegqkVkaGqvIGtvgstgrstgphLhfeirkngkav 94 
                    +++d++    +g+pV+A a GtV  + +   ++yG++v+idhg+gy+t+yahl+ ++v++gq V  G+vIG vgstg stgphLh+e r ng+ +
     KIR63315.1  53 YAVDFNRTddQGDPVVASAPGTVDRVTDlgGTSYGKYVRIDHGGGYTTYYAHLNGFNVSVGQSVGYGKVIGWVGSTGGSTGPHLHYEQRLNGNDI 147
                    5677766522599**********77777444499*******************************************************999876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.45
                    EESSSEEE CS
  Peptidase_M23  17 lAaadGtV 24 
                     ++adGt 
     KIR63315.1 200 GTVADGTK 207
                    33333332 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.049   4.4e+02      23      48 ..      76     101 ..      62     108 .. 0.71
   2 ?   -1.8   0.3      0.44   3.9e+03      44      50 ..     119     126 ..     110     131 .. 0.61
   3 !   28.5   1.3   1.5e-10   1.4e-06       3      49 ..     186     251 ..     184     254 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.049
       SH3_3  23 ekVevleetgggeWykvrtddgteGw 48 
                 ++V+ l+ t +g+++++   +g++ +
  KIR63315.1  76 DRVTDLGGTSYGKYVRIDHGGGYTTY 101
                 56666788888889***665665654 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.44
       SH3_3  44 gt.eGwvs 50 
                 g+  Gwv 
  KIR63315.1 119 GKvIGWVG 126
                 33246764 PP

  == domain 3  score: 28.5 bits;  conditional E-value: 1.5e-10
       SH3_3   3 lnvRsgPstssevigtlpyGekVevleetggge..........Wykv.........rtddgteGwv 49 
                 l vRsgP+t++  +gt+  G+kV++  +t g+           W ++           ++g+ G++
  KIR63315.1 186 LTVRSGPGTGYSSVGTVADGTKVTIHCQTSGTTvtgtygtssiWDRIgsgryiadaYVYTGYDGYI 251
                 78*****************************9999************6665555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1922.96
//
Query:       KIR63316.1  [L=257]
Description: metallophosphoesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-09   36.6   0.6    2.4e-08   34.7   0.5    2.1  2  Metallophos    Calcineurin-like phosphoesterase
      5e-08   33.3   0.0    3.5e-07   30.6   0.0    2.2  2  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.5   2.7e-12   2.4e-08       1      76 [.       2      78 ..       2     206 .. 0.79
   2 ?   -0.5   0.0      0.16   1.4e+03      33      50 ..     228     245 ..     216     256 .. 0.77

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2.7e-12
                 EEEEEEESBTB.TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHHTSEEEEEC-TTS......C CS
  Metallophos  1 lrilvigDlHl.algggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvkypipvylllGNHe......g 76
                 +ri+ +gD+Hl ++ +g+++ +l+ l d+     +d++llaGDl+ +g   +      ++++ +++pv+++lGNH+       
   KIR63316.1  2 IRIAAVGDVHLdEDVVGRFRPALDELPDC-----ADVLLLAGDLTRHGTEAE-ARCVAREFGGLGVPVVTVLGNHDhqcdqvP 78
                 59********9988888888888888665.....7**********9995555.6666677777788**********5444440 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.16
                  TESEEEEESTSSSSSHHH CS
  Metallophos  33 kpdlvllaGDlvdrgdle 50 
                  +++ ++++GD  d g+++
   KIR63316.1 228 QAYSIFHLGDHLDAGEVS 245
                  568899*****9999544 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   3.9e-11   3.5e-07       2     130 ..       3     206 ..       2     234 .. 0.79
   2 ?   -2.1   0.0      0.43   3.9e+03      25      37 ..     228     238 ..     217     247 .. 0.73

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 3.9e-11
  Metallophos_2   2 klaiiSDlH...snldaleavlealkevgvdaiihaGDl..eeeepe...vleellela....pvlaVrGNnD....................... 62 
                    ++a++ D+H   + + + + +l++l ++ +d +++aGDl   ++e e   v +e+        pv++V GN+D                       
     KIR63316.1   3 RIAAVGDVHldeDVVGRFRPALDELPDC-ADVLLLAGDLtrHGTEAEarcVAREF---GglgvPVVTVLGNHDhqcdqvpqvvkvleeagirvleg 94 
                    799******999999999999*******.9********98755555423233333...2446**************99999999999999999999 PP

  Metallophos_2  63 ................................eevveedvlreaaelgtdlp.eeaelelagekvlliHgdpl..............gvkdalael 111
                                                    +e + +++ r  +e +++l  + + l+  +  v+l+H++p                ++++l ++
     KIR63316.1  95 egivlefpagrlgvagvkgfgggfagrcasdfGEPEMKAFVRTTNESAEALGaALRGLD-CDLLVALTHYSPVpdtlagepleiypfLGSYQLGQA 189
                    99999999999999999999999888877655333444444444444444442333344.233599****988999***99999999999999999 PP

  Metallophos_2 112 lkeaeegsdvvvcGHtHvp 130
                    +++  ++ +++++GH H  
     KIR63316.1 190 IDS--APTALALHGHAHAG 206
                    999..9999********76 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.43
  Metallophos_2  25 evgvdaiihaGDl 37 
                    ++    i+h+GD 
     KIR63316.1 228 QA--YSIFHLGDH 238
                    44..6799***94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1775.07
//
Query:       KIR63317.1  [L=98]
Description: hypothetical protein TK50_20975 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0047   17.2   0.0     0.0061   16.8   0.0    1.2  1  BON       BON domain


Domain annotation for each model (and alignments):
>> BON  BON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.4e-07    0.0061       2      57 ..      20      76 ..      19      85 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.4e-07
                HHCCHHHHHHHHHHHCHTTGCCCEEEEETTCEEEECEEECHHHHHHHHHHHHC.CTT CS
         BON  2 DaeiaakvkaalakdggldaadinVevenGvVtLsGtVdseaekekAveiarn.vaG 57
                D+ ++a++ + la+d+++ + +i+V+  +   +L G+V s+  +e + + +++  + 
  KIR63317.1 20 DEYVEAEIHRLLAEDPAVAEQGITVVRRERGLVLYGEVESPHRREEILRRVAErFPD 76
                8899*************************77*************9998766654555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 687.29
//
Query:       KIR63318.1  [L=194]
Description: hypothetical protein TK50_20980 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-13   49.3   0.1    5.9e-13   49.0   0.1    1.1  1  NTP_transf_5  Uncharacterised nucleotidyltransferase
    3.6e-05   23.5   0.0    5.6e-05   22.9   0.0    1.3  1  DUF2204       Nucleotidyl transferase of unknown function (DU
     0.0071   16.1   0.3       0.07   12.9   0.1    2.4  2  Nsp3_PL2pro   Coronavirus polyprotein cleavage domain
  ------ inclusion threshold ------
      0.079   13.1   0.0       0.15   12.2   0.0    1.5  1  DUF2007       Putative prokaryotic signal transducing protein


Domain annotation for each model (and alignments):
>> NTP_transf_5  Uncharacterised nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.1   1.3e-16   5.9e-13      53     229 ..       6     176 ..       1     187 [. 0.77

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 1.3e-16
  NTP_transf_5  53 nllllaeleellalleeegipvllLKGpalaqlYpdpalRemgDiDllvkredldraeelLeelGyelesdgsekhevyyrekkgveielhwrllpp 149
                      l ++l++++a l++ +ip ++L G+   ++Y + ++    D+D+l++ ed+dra e L e+G+ +e + +e++ v  +  +g +++l +r ++ 
    KIR63318.1   6 DETLVHTLKKVAAVLKQSEIP-FALGGSF--AVYAHGGHSSEHDVDFLIRGEDVDRALEALVEAGFDAERP-PEDWLVKVY-DDGRMVDLIHRPIE- 96 
                   567889999***********6.5666654..489999999999***************************9.777777444.59***********4. PP

  NTP_transf_5 150 esprlepdfddlleerarpveiggksilvlspedlllylalHlakhfwn......rglgLrwlvDiaallrklkdeldweallara 229
                    +p +e+ f+d +++      ++  +++vls+  l ++ +l  ++h++        + +Lr+ +D+ ++ ++ +     ea+l  +
    KIR63318.1  97 -TPVTEETFADTIDR-----PVDAIHMPVLSASLLMVHKLLSFSQHYCDfaralpLARSLREQIDWERVRKETQHSPYAEAFLVLL 176
                   .6999******9987.....457789**********************65544442234555555555555544444444444444 PP

>> DUF2204  Nucleotidyl transferase of unknown function (DUF2204)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.3e-08   5.6e-05       4     169 ..      12     168 ..       9     180 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.3e-08
     DUF2204   4 alaevlkvLeekgvkfvviGgtvvelalgrkrlekDvDlFiteksqlleedfyreiaeeedwdvgstelgtvkliakvekeevevdlleNildlyvpee 102
                  l++v+ vL++  + +   Gg  +++a g ++ e+DvD+ i  +  + + + + e++   +            +++kv +++  vdl+    +  v ee
  KIR63318.1  12 TLKKVAAVLKQSEI-PFALGGSFAVYAHGGHSSEHDVDFLIRGEDVDRALEALVEAGFDAER-------PPEDWLVKVYDDGRMVDLIHRPIETPVTEE 102
                 7899**********.8899*************************999999999665544444.......5678************************** PP

     DUF2204 103 iLerakeveiggvevkvislEdyivlKaraareeaeeeldeiarlikelklkldvrlvkehveafpe 169
                 + ++   + ++ +++ v+s   ++v K  ++ +   ++ + +  l+ +l+ ++d ++v+++ +  p 
  KIR63318.1 103 TFADTIDRPVDAIHMPVLSASLLMVHKLLSFSQHYCDFARAL-PLARSLREQIDWERVRKETQHSPY 168
                 *******************************99888887776.467778889999999988776654 PP

>> Nsp3_PL2pro  Coronavirus polyprotein cleavage domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.12   5.3e+02      33      44 ..       3      14 ..       1      25 [. 0.85
   2 !   12.9   0.1   1.6e-05      0.07      10      54 ..      28      71 ..      23      80 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.12
                 EETTEEEEE-SS CS
  Nsp3_PL2pro 33 krGdkivyhtle 44
                  rGd  + htl+
   KIR63318.1  3 ERGDETLVHTLK 14
                 69********97 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.6e-05
                 HHHTEETTEE----EETTEEEEEEETTEEEEE-SSSS--EEETTE CS
  Nsp3_PL2pro 10 slaGsyrdwsysGqrtelGveflkrGdkivyhtlespvefhldGe 54
                 +l Gs+  +++ G  +e  v+fl rG+  v  +le+ ve  +d e
   KIR63318.1 28 ALGGSFAVYAHGGHSSEHDVDFLIRGED-VDRALEALVEAGFDAE 71
                 689***********************98.6799***999998887 PP

>> DUF2007  Putative prokaryotic signal transducing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.4e-05      0.15      15      66 ..      15      66 ..       3      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.4e-05
     DUF2007 15 likslLeeagIeavvkdeftssileGa.lgelpvrilVaeedleeAreileea 66
                 + + L++++I++ + + f + ++ G+  +e  v+ l++ ed+++A e l ea
  KIR63318.1 15 KVAAVLKQSEIPFALGGSF-AVYAHGGhSSEHDVDFLIRGEDVDRALEALVEA 66
                46789**************.8889998669999***************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1377.09
//
Query:       KIR63319.1  [L=316]
Description: RNA polymerase sigma factor SigB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-25   87.2   0.7    8.3e-23   80.3   0.2    2.5  2  Sigma70_r3    Sigma-70 region 3
    3.4e-22   78.0   0.5    8.1e-22   76.8   0.5    1.7  1  Sigma70_r2    Sigma-70 region 2
    7.7e-14   50.9   9.8      1e-12   47.4   2.2    2.9  3  Sigma70_r4    Sigma-70, region 4
    2.3e-10   40.3   0.0    5.7e-10   39.0   0.0    1.7  1  Sigma70_r1_2  Sigma-70 factor, region 1.2
  ------ inclusion threshold ------
      0.051   13.8   0.1        7.1    7.0   0.0    2.7  2  KORA          TrfB plasmid transcriptional repressor
        0.2   11.5   0.0       0.31   10.9   0.0    1.3  1  Tox-MPTase3   Metallopeptidase toxin 3


Domain annotation for each model (and alignments):
>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.2   2.8e-26   8.3e-23       1      76 [.     164     239 ..     164     241 .. 0.97
   2 ?    4.8   0.0      0.01        31      16      40 ..     272     296 ..     266     298 .. 0.92

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 2.8e-26
                 XHHHHHHHHHHHHHHHHSSXXXHHHHHHHHTXXHHHHHHHHHHHXXXEETTXBSSSSTTXBSTTTXBXSSSXXHHH CS
  Sigma70_r3   1 EklnkikraqreLeqelgrePtpeEiAeeLglseekVrevleaarepvSldlpvgeeedtelgdlleddeaespee 76 
                 E  n+ ++++r+L++elg +P pe iA++Lg+++e+V e+++ +++ vSld+pvg+++dt lgdl++d++a spe+
  KIR63319.1 164 EDVNRMRNVARQLTRELGSDPEPEQIAAALGVTVERVNELVRWSQDTVSLDTPVGDDGDTNLGDLVADSDAPSPED 239
                 567999********************************************************************98 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.01
                 HHSSXXXHHHHHHHHTXXHHHHHHH CS
  Sigma70_r3  16 elgrePtpeEiAeeLglseekVrev 40 
                 e gre + +E+A +  ls e++r++
  KIR63319.1 272 EDGREHSLTEVASRFSLSRERIRQL 296
                 569999****************985 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.5   2.7e-25   8.1e-22       1      70 [.      85     154 ..      85     155 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 2.7e-25
                 HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2   1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70 
                 +++++l+lv+++arr+++sg  + Dl+Qe++ +l rave+fd erg++fs+++++++r+a+ +++ ++ r
  KIR63319.1  85 FIRANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRAVEKFDYERGFKFSTYATWWIRQAISRAIAQQER 154
                 689**************************************************************99987 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.2   3.7e+03      37      46 ..     141     150 ..     140     151 .. 0.84
   2 !    7.8   0.1   0.00076       2.3      24      40 ..     187     203 ..     185     205 .. 0.89
   3 !   47.4   2.2   3.4e-16     1e-12       1      50 []     253     306 ..     253     306 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
                 HHHHHHHHHH CS
  Sigma70_r4  37 VrqiekrAlr 46 
                 +rq ++rA+ 
  KIR63319.1 141 IRQAISRAIA 150
                 8999999986 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00076
                 HHHHHHHTS-HHHHHHH CS
  Sigma70_r4  24 eEIgerlgiSrerVrqi 40 
                 e+I++ lg++ erV  +
  KIR63319.1 187 EQIAAALGVTVERVNEL 203
                 79************766 PP

  == domain 3  score: 47.4 bits;  conditional E-value: 3.4e-16
                 HHHHS-HHHHHHHHHHH....TTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrf....geglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 +L++L++r   +++ r+    g++++l E++ r+ +Srer+rq+e +Al +LR+
  KIR63319.1 253 LLNHLDDRSAGIMRARYgledGREHSLTEVASRFSLSRERIRQLEIQALGRLRE 306
                 599**************************************************7 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   1.9e-13   5.7e-10       1      34 []      20      53 ..      20      53 .. 0.96

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 1.9e-13
                  HHHHHHHHHHHHSX--THHHHHHHHHHHHCCHHH CS
  Sigma70_r1_2  1 DpvrlYLrEIGriPLLtaeEEveLAkrieaGdea 34
                  D v+ YL+EI+r+PLL a+ Ev+L+k ieaG++a
    KIR63319.1 20 DLVGVYLHEISRTPLLDAATEVDLSKSIEAGLYA 53
                  89*****************************975 PP

>> KORA  TrfB plasmid transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.019        56      35      53 ..     187     205 ..     161     212 .. 0.85
   2 ?    7.0   0.0    0.0024       7.1      34      69 ..     279     314 ..     243     315 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.019
        KORA  35 advatelgltkqavsqavk 53 
                 +++a++lg+t ++v+++v+
  KIR63319.1 187 EQIAAALGVTVERVNELVR 205
                 79*************9985 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0024
        KORA  34 qadvatelgltkqavsqavkrvwaahaereepagle 69 
                  ++va +  l+++++ q++ +++    e+++++gl+
  KIR63319.1 279 LTEVASRFSLSRERIRQLEIQALGRLRELARAEGLQ 314
                 579***********************9999999985 PP

>> Tox-MPTase3  Metallopeptidase toxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0001      0.31      67     129 ..     161     222 ..      98     229 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0001
  Tox-MPTase3  67 tpddkgeei.liagklvekfekgkekelvreanvylvivtl..LHEliHwgrkkngldrpageeGe 129
                  +  + ++++  +a +l  + + ++e e + +a    ++vt+  + El+ w+++   ld p+g++G 
   KIR63319.1 161 HLVEDVNRMrNVARQLTRELGSDPEPEQIAAA----LGVTVerVNELVRWSQDTVSLDTPVGDDGD 222
                  44566777767899999999999999866666....455553389******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2342.50
//
Query:       KIR63320.1  [L=327]
Description: glycoside hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-20   72.9   0.0    3.9e-20   71.8   0.0    1.5  1  NLPC_P60        NlpC/P60 family
     0.0027   17.1   4.5      0.026   13.8   1.2    2.1  2  DUF3450         Protein of unknown function (DUF3450)
      0.005   17.1   1.2       0.16   12.2   0.1    2.2  2  DUF948          Bacterial protein of unknown function (DUF948
  ------ inclusion threshold ------
      0.013   15.5   2.3        0.1   12.6   0.0    2.1  2  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
      0.016   15.2   0.1      0.051   13.5   0.1    1.7  1  Amidase_5       Bacteriophage peptidoglycan hydrolase
      0.032   14.6   6.6        2.5    8.5   2.0    2.8  3  CLZ             C-terminal leucine zipper domain of cyclic nu
      0.037   14.6   0.5       0.11   13.1   0.1    2.0  1  CHAP            CHAP domain
      0.039   12.6   5.2       0.14   10.8   2.2    2.0  2  Dor1            Dor1-like family
      0.066   13.2   0.4        9.2    6.2   0.4    2.2  2  DUF4446         Protein of unknown function (DUF4446)
      0.083   13.2   0.1       0.21   11.9   0.1    1.7  1  LRAT            Lecithin retinol acyltransferase
      0.089   12.8   1.8        8.9    6.4   0.0    2.3  2  DUF1664         Protein of unknown function (DUF1664)
        0.1   12.8   3.0       0.16   12.1   0.7    2.0  2  GCN5L1          GCN5-like protein 1 (GCN5L1)
       0.18   10.4   2.9        0.5    9.0   0.1    2.0  2  AAA_13          AAA domain
        0.2   11.5  10.9       0.26   11.1   0.2    2.5  2  DivIC           Septum formation initiator
       0.21   11.4   1.7       0.83    9.4   1.7    1.8  1  Mer2            Mer2
       0.69    8.4   8.2       0.88    8.0   8.2    1.1  1  FUSC            Fusaric acid resistance protein family
        1.7    9.2   9.2         14    6.3   0.2    2.2  2  APG6_N          Apg6 coiled-coil region
        2.1    8.7   7.2         21    5.5   0.0    2.2  2  KxDL            Uncharacterized conserved protein
        2.2    8.7   9.5        1.8    9.0   0.3    2.2  2  CENP-H          Centromere protein H (CENP-H)
        2.4    8.5  12.5         15    5.9   7.1    2.3  2  DUF4164         Domain of unknown function (DUF4164)
        3.2    8.1  10.7         27    5.1   4.7    3.0  3  ABC_tran_CTD    ABC transporter C-terminal domain
        3.6    7.8  15.7         12    6.1   7.5    2.1  1  ATG16           Autophagy protein 16 (ATG16)
        3.7    7.5   6.5         10    6.1   0.2    2.5  2  Prefoldin_2     Prefoldin subunit
        9.3    6.4  11.2        7.5    6.7   1.1    2.2  2  CENP-Q          CENP-Q, a CENPA-CAD centromere complex subuni


Domain annotation for each model (and alignments):
>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   5.2e-23   3.9e-20       1      90 [.     228     314 ..     228     321 .. 0.91

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 5.2e-23
                 T-BB-TT--BTTEB-HHHHHHHHHHTTT----SSHHHHCCCSEE..EEGGG--TTEEEEESGTGGESEEEEEEETTEEEEEE..TTEEEEEE CS
    NLPC_P60   1 gkpYrwGGkspsgfDCsglvryafakagielprssgeqeaagkkkeiskselkrGDLvffktkkgisHvgiYlgngkmlhas..sekvsvss 90 
                 gkpY+w+   p+g+DCsgl+++a++ ag +lp++++ q  +  +  is+sel++GDLvf+++     Hv++Y+g+g+++ha+  + +v+ ++
  KIR63320.1 228 GKPYVWAADGPNGYDCSGLTSAAWRAAGKSLPHNTRMQWGVVSH--ISRSELRPGDLVFYNS---LGHVALYVGDGQVIHAPtfGRHVEKRD 314
                 89************************************777777..****************...9***************96666666555 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.025        19      32      86 ..      33      87 ..      10      98 .. 0.56
   2 !   13.8   1.2   3.5e-05     0.026      21      87 ..     117     183 ..     105     196 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.025
     DUF3450 32 aaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiaslee 86
                 a+  ++i++++ e + +++ y++l+e +++ ++  ++l++ +  +e++ a+ + 
  KIR63320.1 33 PAELTRRIENSSTELERVVESYNKLNEDIKANKATAAKLAARIGPLEAQTAQSRA 87
                3444555555555555555556666655555555555555555555555554444 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.5e-05
     DUF3450  21 alkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeq 87 
                 +l+      + ++q q++i  ++++++ ll++  +l + l++ +++ +ql+++ +  e+++a+l e 
  KIR63320.1 117 LLDRLDTLDQLSRQRQQRIAGYTENQRRLLDQKGRLDATLAKQAAQAKQLTASRKRIEKDLAELYEM 183
                 566666778899999****************************************999999999765 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   0.00021      0.16      25      81 ..      23      79 ..       7      86 .. 0.80
   2 ?    3.7   0.2     0.096        72      27      87 ..     120     180 ..     115     182 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00021
      DUF948 25 kktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlg 81
                   + +a+ t +el++++++ ++e+e++++  n+l ed++   ++  +l + ++ l 
  KIR63320.1 23 PASVARAEPTPAELTRRIENSSTELERVVESYNKLNEDIKANKATAAKLAARIGPLE 79
                456778888999*****************************9999988888777665 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.096
      DUF948  27 tldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvsel 87 
                  ld + +  ++ ++++ +++++ ++ll++  +l + + ++ ++ ++lt++ + + + ++el
  KIR63320.1 120 RLDTLDQLSRQRQQRIAGYTENQRRLLDQKGRLDATLAKQAAQAKQLTASRKRIEKDLAEL 180
                 567777888888999999**************999**************999999988877 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00014       0.1      19      78 ..      33      92 ..      26      99 .. 0.93
   2 ?    2.3   0.7      0.21   1.6e+02      38      80 ..     140     182 ..     116     191 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00014
  CENP-F_leu_zip 19 adsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLval 78
                     + L  ++en   ele + e+ +k+  +   +ka++ +l + i  l++++ + ++d+ ++
      KIR63320.1 33 PAELTRRIENSSTELERVVESYNKLNEDIKANKATAAKLAARIGPLEAQTAQSRADVGTI 92
                    578999**************************************************9886 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.21
  CENP-F_leu_zip  38 enqekvileaEtskaevetlkeeieelaeelreleldLvalrs 80 
                     enq ++  ++    a++ +  ++ ++l+++++++e dL++l +
      KIR63320.1 140 ENQRRLLDQKGRLDATLAKQAAQAKQLTASRKRIEKDLAELYE 182
                     5555555555555566666666667777777777777766644 PP

>> Amidase_5  Bacteriophage peptidoglycan hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   6.9e-05     0.051      23     106 ..     235     303 ..     230     309 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.9e-05
   Amidase_5  23 rlGPnsydcsssvyfaliaaGalsaGsavntetlfdslikngykeiaennakrGdifiwGvrGasaGagGhtglfidsesiihc 106
                  +GPn ydcs     a +aaG +      nt + ++        +i++++ + Gd++ +        + Gh++l++ ++++ih 
  KIR63320.1 235 ADGPNGYDCSGLTSAAWRAAGKS---LPHNTRMQWGV-----VSHISRSELRPGDLVFYN-------SLGHVALYVGDGQVIHA 303
                 58********9999999999976...45799999994.....457889999999999875.......56788888888888885 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0074       5.5      19      70 ..      26      80 ..      20      81 .. 0.80
   2 ?    1.3   0.1      0.61   4.5e+02      34      61 ..     119     145 ..      98     147 .. 0.78
   3 ?    8.5   2.0    0.0034       2.5       6      44 ..     143     181 ..     139     187 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0074
         CLZ 19 aakagaeqkeleekverLessLeaLqtrlarLlaey...essqrkLkqRitkLEk 70
                +a a++++ el +++e+  ++Le     +++L ++    +++++kL +Ri  LE+
  KIR63320.1 26 VARAEPTPAELTRRIENSSTELERVVESYNKLNEDIkanKATAAKLAARIGPLEA 80
                56788889999999999999999999999999777611156889********997 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.61
         CLZ  34 erLessLeaLqtrlarLlaeyessqrkL 61 
                 +rL  +L++L  + ++ +a y++ qr+L
  KIR63320.1 119 DRL-DTLDQLSRQRQQRIAGYTENQRRL 145
                 455.479999999999999999999998 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0034
         CLZ   6 reILlKdglLDeeaakagaeqkeleekverLessLeaLq 44 
                 r +L + g LD + ak+ a++k+l    +r+e+ L  L 
  KIR63320.1 143 RRLLDQKGRLDATLAKQAAQAKQLTASRKRIEKDLAELY 181
                 889**********99*99***************998885 PP

>> CHAP  CHAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   0.00015      0.11       9      70 ..     242     294 ..     219     304 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00015
                 SHHHHH..HHHHHHHSSSSSSSECTCCH..HC....EEEEEECSTBS--TTEEEEEETTTTBCT-EEEEE CS
        CHAP   9 qCvefa..ywrlrqaggnaddWnnakka..kg....yknqanvgsstpkvGdivvfdrggeggyGHVaiV 70 
                 +C  +   +wr   a   ++       +  ++    +   ++ ++s+ ++Gd+v++++      GHVa  
  KIR63320.1 242 DCSGLTsaAWR--AA---GK-------SlpHNtrmqWGVVSHISRSELRPGDLVFYNS-----LGHVALY 294
                 45544433444..33...22.......2222233448888899998999*******75.....79**975 PP

>> Dor1  Dor1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.059        44      71     102 ..      35      67 ..       2      75 .. 0.63
   2 ?   10.8   2.2   0.00019      0.14      27      93 ..     121     187 ..     115     192 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.059
        Dor1  71 kLteectrfskkaeeisek.rkenkllldkheq 102
                 +Lt  ++++s+++e+++e+ +k+n+ +++++++
  KIR63320.1  35 ELTRRIENSSTELERVVESyNKLNEDIKANKAT 67 
                 566666666666666666655556555555544 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00019
        Dor1  27 laqiqdLarknyktlidaaealeairqelediraqledLvlklpkLteectrfskkaeeisekrken 93 
                 l  + +L+r+  + ++ ++e+++++  + ++++a l++ + ++ +Lt + +r+ k+++e+ e r+++
  KIR63320.1 121 LDTLDQLSRQRQQRIAGYTENQRRLLDQKGRLDATLAKQAAQAKQLTASRKRIEKDLAELYEMRRQA 187
                 567889*********************************************************9986 PP

>> DUF4446  Protein of unknown function (DUF4446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.032        24      24      91 ..      26      98 ..       7     111 .. 0.57
   2 ?    6.2   0.4     0.012       9.2      39      80 ..     148     189 ..     116     192 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.032
     DUF4446 24 lkklkkkykklmk..gkdgksleellkekleeveel...keeseelekeieeleeklkkslqkvglvrYdAFe 91
                + + +    +l++  +++ ++le++++++ +  e++   k++ ++l ++i  le++ ++s   vg +   A++
  KIR63320.1 26 VARAEPTPAELTRriENSSTELERVVESYNKLNEDIkanKATAAKLAARIGPLEAQTAQSRADVGTIAVTAYK 98
                4455555555555223345556666655554444440004444567777777888877777777777666665 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.012
     DUF4446  39 dgksleellkekleeveelkeeseelekeieeleeklkkslq 80 
                 ++  l+ +l+++ ++ ++l ++ +++ek+++el+e+ ++++ 
  KIR63320.1 148 QKGRLDATLAKQAAQAKQLTASRKRIEKDLAELYEMRRQAYG 189
                 567899****************************99998876 PP

>> LRAT  Lecithin retinol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00028      0.21       3      31 ..     277     303 ..     275     317 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00028
                 --TT-EEEEE-SSSEEEEEEEETTEEEEE CS
        LRAT   3 lkrGdllevsRtlyeHhgiyvGdgkVvHl 31 
                 l++Gdl+        H ++yvGdg+V+H 
  KIR63320.1 277 LRPGDLVF--YNSLGHVALYVGDGQVIHA 303
                 67888876..46778*************6 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.012       8.9      60     105 ..      32      77 ..      22      94 .. 0.79
   2 ?    5.0   0.9     0.032        24      42      99 ..     123     180 ..     120     187 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.012
     DUF1664  60 tkrhLssridrvdkkldeqkeiskeikeevtevredlseigedves 105
                 t  +L++ri++  ++l+ + e  ++++e++++ +   +++   +  
  KIR63320.1  32 TPAELTRRIENSSTELERVVESYNKLNEDIKANKATAAKLAARIGP 77 
                 5578999999999999999999999999999888877777666555 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.032
     DUF1664  42 avesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlsei 99 
                  ++++s+q +q  +  ++ +r+L ++  r+d++l +q++ +k++++  +++++dl+e+
  KIR63320.1 123 TLDQLSRQRQQRIAGYTENQRRLLDQKGRLDATLAKQAAQAKQLTASRKRIEKDLAEL 180
                 667888888888899999999999999***************9999999999998876 PP

>> GCN5L1  GCN5-like protein 1 (GCN5L1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       1.1     8e+02      46      60 ..      51      65 ..      34      92 .. 0.51
   2 ?   12.1   0.7   0.00021      0.16      33      89 ..     126     182 ..     119     185 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.1
      GCN5L1 46 yanqkklekeakalq 60
                 +  +kl++++ka +
  KIR63320.1 51 VESYNKLNEDIKANK 65
                222233333333333 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00021
      GCN5L1  33 alvdklnsgvaeayanqkklekeakalqanvakfakqtdqWlalvesfnsalkeiGD 89 
                 +l  + ++++a   +nq++l ++  +l a++ak a q++q +a  ++++++l e+ +
  KIR63320.1 126 QLSRQRQQRIAGYTENQRRLLDQKGRLDATLAKQAAQAKQLTASRKRIEKDLAELYE 182
                 66777789999999***************************************9965 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00066       0.5     405     463 ..      34      92 ..       7     103 .. 0.87
   2 ?    1.7   0.6      0.11        79     403     450 ..     134     181 ..     118     202 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00066
      AAA_13 405 eeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeei 463
                 +el+  +++  ++++++ ++ +kl++++k+++a ++kl+++i  Le+q+ + +  +  i
  KIR63320.1  34 AELTRRIENSSTELERVVESYNKLNEDIKANKATAAKLAARIGPLEAQTAQSRADVGTI 92 
                 577888999999999999999**************************999998877666 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.11
      AAA_13 403 lveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLe 450
                 +++ ++++  ++ +++ +l++++ k  +++k+ +a  k +e++ +eL 
  KIR63320.1 134 RIAGYTENQRRLLDQKGRLDATLAKQAAQAKQLTASRKRIEKDLAELY 181
                 333344444444445555555555555555555555555555555543 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00034      0.26      13      57 ..      48      92 ..      42      96 .. 0.87
   2 ?    3.4   5.0     0.084        63      20      66 ..     143     189 ..     135     192 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
                XXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXX CS
       DivIC 13 kkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyi 57
                ++ + +y +l+++i+a +a+ akl a++  Lea+ ++ + d   i
  KIR63320.1 48 ERVVESYNKLNEDIKANKATAAKLAARIGPLEAQTAQSRADVGTI 92
                566789****************************99987776655 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.084
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXX CS
       DivIC  20 kqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerARselg 66 
                 ++l  +  +l a+lak+ a+ ++L+a  k+ ++d + + e+ R+ +g
  KIR63320.1 143 RRLLDQKGRLDATLAKQAAQAKQLTASRKRIEKDLAELYEMRRQAYG 189
                 56667778888888888888888888888888888888887776665 PP

>> Mer2  Mer2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.7    0.0011      0.83      48     138 ..      35     162 ..      32     186 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0011
        Mer2  48 kLinvlkenskeLlkvisklnellidlkeeesdnskekeikdlikdLsvkienqlskvskavldklk................................ 114
                 +L++ ++++s+eL +v++++n+l  d+k    +++++ ++   i  L+++  ++ ++v +      k                                
  KIR63320.1  35 ELTRRIENSSTELERVVESYNKLNEDIKA---NKATAAKLAARIGPLEAQTAQSRADVGTIAVTAYKsgrldtanallspggpstlldrldtldqlsrq 130
                 899*********************99998...9999999999999999999998888776655555545555555555555555555555555555555 PP

        Mer2 115 ........vkkhksntdtksnLtellekkeak 138
                         +++++  +d+k  L  +l+k+ a+
  KIR63320.1 131 rqqriagyTENQRRLLDQKGRLDATLAKQAAQ 162
                 55555555555555555555555555555555 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   8.2    0.0012      0.88     140     289 ..      12     180 ..      10     223 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0012
        FUSC 140 vCaalVsalvfPrsvapa......lrarlrallrdalalaaaalageegaeareaararlaadilalealrsqaayesprirara...ralrrllsrm. 228
                 v a+lV  l+ P+sva+a      l +r++    ++ + +++  + +e+ +a +a+ a+laa+i  lea+ +q +++ + i+ +a   ++l  +++ + 
  KIR63320.1  12 VTAGLVATLIAPASVARAeptpaeLTRRIENSSTELERVVESYNKLNEDIKANKATAAKLAARIGPLEAQTAQSRADVGTIAVTAyksGRLDTANALLs 110
                 568899999999776654332333777777777777777777777777777778999999999999999999999999987654300133333333321 PP

        FUSC 229 ....lallallsslarllarlraeeaaavpelaallaelaal.....eaaaaaealeaalaalrarlral 289
                      +ll +l+ l +l ++ +++ a+ ++  + ll++  +l     ++aa+a++l+a +++++++l++l
  KIR63320.1 111 pggpSTLLDRLDTLDQLSRQRQQRIAGYTENQRRLLDQKGRLdatlaKQAAQAKQLTASRKRIEKDLAEL 180
                 1122456666666666666666666666555666666666656555444444444444444444444443 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2     0.018        14      46      92 ..      37      83 ..      22      93 .. 0.58
   2 ?    5.3   4.4     0.035        26      17      89 ..     127     182 ..     115     191 .. 0.40

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.018
      APG6_N 46 deeleeleeeleklekeeeelleeLkelekereeleaelaaleeele 92
                   +e++  ele++ +  ++l e +k+ +++ ++l+a +  le++++
  KIR63320.1 37 TRRIENSSTELERVVESYNKLNEDIKANKATAAKLAARIGPLEAQTA 83
                34455555555555555555555555555555555555555555555 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.035
      APG6_N  17 qleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaalee 89 
                   +q ++ +  Y                  e+ ++l ++  +l+++ ++  ++ k+l + r+++e++la+l e
  KIR63320.1 127 LSRQRQQRIAGY-----------------TENQRRLLDQKGRLDATLAKQAAQAKQLTASRKRIEKDLAELYE 182
                 222222222222.................23333333333334444444444444444444444444444433 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.028        21      23      80 ..      27      84 ..      20      88 .. 0.78
   2 ?    3.0   5.1      0.16   1.2e+02      10      66 ..     123     179 ..     116     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.028
        KxDL 23 grlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslkaklak 80
                +r + + +eL++ ++ s+++l+++ + +++  +++k  k+   ++  +i  l+a++a+
  KIR63320.1 27 ARAEPTPAELTRRIENSSTELERVVESYNKLNEDIKANKATAAKLAARIGPLEAQTAQ 84
                5666777888888888888888888888888888888888888888888777777665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.16
        KxDL  10 dldeilalQaqtsgrlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLes 66 
                 +ld+  ++ +q  + + + +r+Ll++   +++ lak  a+ kq t   k++ kdL  
  KIR63320.1 123 TLDQLSRQRQQRIAGYTENQRRLLDQKGRLDATLAKQAAQAKQLTASRKRIEKDLAE 179
                 5677666666777778888999*********************************86 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3    0.0023       1.8      10      61 ..      35      86 ..      32     107 .. 0.83
   2 ?    3.0   3.7      0.17   1.3e+02      14      80 ..     120     185 ..     115     189 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0023
      CENP-H 10 elssellklsqelrelqeeltevekenlrlkrknrelaaellelakekesek 61
                el  ++++ s+el+ + e+ +++++++++ k++ ++laa++  l+ ++++ +
  KIR63320.1 35 ELTRRIENSSTELERVVESYNKLNEDIKANKATAAKLAARIGPLEAQTAQSR 86
                678899***********************************76666666655 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.17
      CENP-H  14 ellklsqelrelqeeltevekenlrlkrknrelaaellelakekesekeklkeelekleaelkksrq 80 
                 +l  l q +r+ q++++  +++++rl  ++  l a+l+++a ++++     ++++ek  ael + r+
  KIR63320.1 120 RLDTLDQLSRQRQQRIAGYTENQRRLLDQKGRLDATLAKQAAQAKQLT-ASRKRIEKDLAELYEMRR 185
                 556677888999999999999999999999999999977777777777.456666666666655555 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2     0.025        19       8      46 ..      35      73 ..      29     106 .. 0.71
   2 ?    5.9   7.1      0.02        15      17      80 ..     118     181 ..     115     188 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.025
     DUF4164  8 aaltrLeaaldsLEkavdrrleaerkrdeleaeiealge 46
                + ++r+e++ ++LE+ v+   + +++ ++ +a+ ++l++
  KIR63320.1 35 ELTRRIENSSTELERVVESYNKLNEDIKANKATAAKLAA 73
                567788888888888887766666666555555555543 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.02
     DUF4164  17 ldsLEkavdrrleaerkrdeleaeiealgedrsRLaeeLdqaearaarleevnrEvsrrLkaai 80 
                 ld+L++  +  +++++  + + ++ ++l + + RL++ L ++ a a++l +  + + ++L  + 
  KIR63320.1 118 LDRLDTLDQLSRQRQQRIAGYTENQRRLLDQKGRLDATLAKQAAQAKQLTASRKRIEKDLAELY 181
                 67777777777777888899999999*************************9999999997765 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1      0.05        37      41      69 .]      31      59 ..      14      59 .. 0.79
   2 ?    0.1   0.0       1.3   9.8e+02      11      27 ..      69      85 ..      61     107 .. 0.70
   3 ?    5.1   4.7     0.036        27       2      62 ..     127     182 ..     126     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.05
  ABC_tran_CTD 41 eklaelsaeleeleaeLeelyerWeeLee 69
                   + ael++++e+  +eLe+  e +  L+e
    KIR63320.1 31 PTPAELTRRIENSSTELERVVESYNKLNE 59
                  45689****************99999876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.3
  ABC_tran_CTD 11 eeleaeIeaLEeeiael 27
                  ++l a+I  LE++ a+ 
    KIR63320.1 69 AKLAARIGPLEAQTAQS 85
                  45666666666666654 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.036
  ABC_tran_CTD   2 lsykeqreleeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeelye 62 
                   ls++ q++++   +   +L  ++  l+a la+ +     ++ ++l+a  +++e++L+elye
    KIR63320.1 127 LSRQRQQRIAGYTENQRRLLDQKGRLDATLAKQA-----AQAKQLTASRKRIEKDLAELYE 182
                   6777777777777777778888999999999777.....999******************8 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   7.5     0.016        12      26     100 ..     116     187 ..      94     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.016
       ATG16  26 rLldrtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgel 100
                  Lldr ++l++ +++ ++++a  +++++   ++k +++ + +   kq+a+ ++l++ ++++ ++laely  r + 
  KIR63320.1 116 TLLDRLDTLDQLSRQRQQRIAGYTENQRRLLDQKGRLDATLA---KQAAQAKQLTASRKRIEKDLAELYEMRRQA 187
                 699*************99999999855545455555555444...79999*******************888775 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2     0.014        10      65     101 ..      34      70 ..      29      74 .. 0.85
   2 ?    3.8   1.3     0.072        53       8      98 ..     150     183 ..     142     191 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.014
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Prefoldin_2  65 eeLeerketlekeiktlekqleklekeleelkeelqk 101
                  +eL  r+e+ ++e++++ +++ kl+++++  k++  k
   KIR63320.1  34 AELTRRIENSSTELERVVESYNKLNEDIKANKATAAK 70 
                  5799999999999**9999999999999988876655 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.072
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2   8 qqlqqqlqqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkee 98 
                   +l ++l + a                                                         ++ k+l+ + +++ek+l+el e+
   KIR63320.1 150 GRLDATLAKQA---------------------------------------------------------AQAKQLTASRKRIEKDLAELYEM 183
                  44444444444.........................................................45555555555555555555444 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   1.1      0.01       7.5      49      95 ..      34      80 ..      24     133 .. 0.80
   2 ?    4.4   3.3     0.052        39      28      68 ..     143     183 ..     139     193 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.01
      CENP-Q 49 elLeaeiekeeralerdyeaLreLeknakaearerkeklkkehvllq 95
                ++L + ie    +ler  e+ ++L + +ka++++  + + +  +l  
  KIR63320.1 34 AELTRRIENSSTELERVVESYNKLNEDIKANKATAAKLAARIGPLEA 80
                6899999999*********************9997776666455544 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.052
      CENP-Q  28 eklldekaaleaqLspelhslelLeaeiekeeralerdyea 68 
                  +lld+k +l a L+ +  + ++L a +++ e+ l++ ye 
  KIR63320.1 143 RRLLDQKGRLDATLAKQAAQAKQLTASRKRIEKDLAELYEM 183
                 6899******************************9999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1334  (0.0744046); expected 358.6 (0.02)
Passed bias filter:                      876  (0.0488594); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 2425.33
//
Query:       KIR63321.1  [L=108]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-30  104.6   3.8    4.2e-30  104.4   3.8    1.0  1  DUF3817   Domain of unknown function (DUF3817)
  ------ inclusion threshold ------
      0.011   15.2   0.4      0.012   15.0   0.4    1.0  1  UPF0014   Uncharacterised protein family (UPF0014)
        1.7    8.5   6.4       0.21   11.4   0.8    2.2  2  DUF5337   Family of unknown function (DUF5337)


Domain annotation for each model (and alignments):
>> DUF3817  Domain of unknown function (DUF3817)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   3.8     7e-34   4.2e-30       1      81 [.       5      91 ..       5      93 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 7e-34
     DUF3817  1 lklyrviAiiegvslllL.lvamilkyl.....lvkvigivHGllfvvYlllalllaskmrWslkrlvllllagvvPflsfiverkl 81
                l++yrviA+i gv l++L lv+m+lky+     +v v+g++HG+l++vYl+++++l +++ W+lkr++l++lag+vPf+sf++er++
  KIR63321.1  5 LTRYRVIAWIVGVALVVLvLVGMPLKYGfdepaVVAVVGTAHGWLYMVYLAATFDLSRRADWPLKRMLLVMLAGTVPFVSFYAERRV 91
                689******************************99**************************************************98 PP

>> UPF0014  Uncharacterised protein family (UPF0014)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.4     2e-06     0.012      27      93 ..       9      79 ..       3     100 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2e-06
     UPF0014 27 kelliaavrmvvQLllvGyvLklifalnslllvllil...lvml.lvAaieaakrvkkklkklllivllsl 93
                + +++ +  ++v L+lvG+ Lk+ f+   +++v++ +   l m+ l+A++   +r++  lk++ll++l++ 
  KIR63321.1  9 RVIAWIVGVALVVLVLVGMPLKYGFDEPAVVAVVGTAhgwLYMVyLAATFDLSRRADWPLKRMLLVMLAGT 79
                56777888899****************99999886532224555055666888888888888776555443 PP

>> DUF5337  Family of unknown function (DUF5337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.5      0.27   1.6e+03      15      28 ..      10      23 ..       5      31 .. 0.51
   2 ?   11.4   0.8   3.5e-05      0.21      18      43 ..      39      64 ..      36      83 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.27
     DUF5337 15 lvalviavtmllwl 28
                ++a ++ v+ ++ +
  KIR63321.1 10 VIAWIVGVALVVLV 23
                44444444333333 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.5e-05
     DUF5337 18 lviavtmllwlgaqwigeqlglsnRy 43
                +++++t+  wl + +++++++ls R 
  KIR63321.1 39 VAVVGTAHGWLYMVYLAATFDLSRRA 64
                6799*******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 908.95
//
Query:       KIR63322.1  [L=146]
Description: hypothetical protein TK50_21015 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.68   10.0   5.3        1.1    9.4   5.3    1.2  1  Sdh_cyt     Succinate dehydrogenase/Fumarate reductase transm
       0.72   10.0   5.6        8.6    6.6   0.6    2.6  2  Leader_Trp  Trp-operon Leader Peptide
        1.5    9.0   5.5        6.5    7.0   5.4    2.2  1  SURF1       SURF1 family


Domain annotation for each model (and alignments):
>> Sdh_cyt  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.3   0.00018       1.1      22      83 ..       8      66 ..       2      68 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00018
     Sdh_cyt 22 lsilhritGvallvglllllvwlllalslsspesfarvvallaspiklilllllllallyHl 83
                ++i+  +  v+l+vg+l l +w ++ ++++ + s+ + v++    ++++ +l +++  l H+
  KIR63322.1  8 AWIARHVAMVVLVVGFLGLGWWQITRAAGGNALSWGYAVEWP---VFAAFVLFVWWRELRHA 66
                79999999999999************************9998...45555477778777776 PP

>> Leader_Trp  Trp-operon Leader Peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.4    0.0039        23       8      13 ..      26      31 ..      23      32 .. 0.86
   2 ?    6.6   0.6    0.0014       8.6       3      12 ..      52      61 ..      51      62 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0039
  Leader_Trp  8 lgWWrt 13
                lgWW +
  KIR63322.1 26 LGWWQI 31
                7***98 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0014
  Leader_Trp  3 alfsLlgWWr 12
                a f+L  WWr
  KIR63322.1 52 AAFVLFVWWR 61
                679******9 PP

>> SURF1  SURF1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.4    0.0011       6.5       2      25 ..      18      41 ..      17     108 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0011
       SURF1  2 vpvvvlfgLGtWQlqRlkwkeali 25
                v+vv ++gLG WQ+ R++  +al 
  KIR63322.1 18 VLVVGFLGLGWWQITRAAGGNALS 41
                67799************9887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1048.99
//
Query:       KIR63323.1  [L=104]
Description: hypothetical protein TK50_21020 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 865.42
//
Query:       KIR63324.1  [L=111]
Description: hypothetical protein TK50_21025 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-06   27.1   4.7     0.0089   16.3   0.9    2.1  2  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
     0.0032   17.7   0.4      0.022   15.0   0.3    2.0  2  AHSA1            Activator of Hsp90 ATPase homolog 1-like pro
  ------ inclusion threshold ------
      0.029   14.6   0.4       0.14   12.4   0.4    1.9  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
       0.13   11.8   0.0       0.19   11.2   0.0    1.2  1  ADC              Acetoacetate decarboxylase (ADC)


Domain annotation for each model (and alignments):
>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.9     2e-06    0.0089      11      42 ..      10      42 ..       2      62 .. 0.78
   2 !   12.8   0.6   2.3e-05       0.1      89     138 ..      62     108 ..      43     110 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2e-06
                     SS-HHHHHHHHTTTTGGGGT-TTEEEEECSE.S CS
  Polyketide_cyc2 11 aappekVwalvsdfenwprWhpevarveleg.g 42
                      appe V++ ++d++  ++W pe +r+ +++ +
       KIR63324.1 10 SAPPEVVFSTATDPDRAAAWLPEPLRSDGDSrP 42
                     69********************99999888632 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.3e-05
                      EEEEEEEECC.ETEEEEEEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  89 vatwtvtpdg.ggtrvtwtgefdagplggpfekpaaakavkgdleagLerL 138
                      +a+++v+p++ gg rv+ + + +a    g +e+++a++ ++   ++  ++L
       KIR63324.1  62 SAEIRVEPADaGGARVRLDLAGAA----GGAEAGLADETLANLAREVADNL 108
                      799*****9956699**9996665....66677777777777777777777 PP

>> AHSA1  Activator of Hsp90 ATPase homolog 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.3     5e-06     0.022       2      29 ..      11      37 ..      10      91 .. 0.71
   2 ?    2.9   0.0     0.026   1.2e+02      11      97 ..      52      82 ..      37     109 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5e-06
                S-HHHHHHHHH-HHHHHHH.....EEEEEEEE- CS
       AHSA1  2 apperVfraltdpellkrW.....ftlteaemd 29
                appe Vf + tdp++ ++W            +d
  KIR63324.1 11 APPEVVFSTATDPDRAAAWlpeplR------SD 37
                9******************655432......22 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.026
                HH-HHHHHHHEEEEEEEE--STTEEEEEEETTTSEEEEEEEEEEEEETTTEEEEEEEEETSETEEEEEEEEEEEE.ETTEEEEEEEEE CS
       AHSA1 11 ltdpellkrWftlteaemdlrpGgkfrlrdspdgkefgnegeylevvpperlvytwrledepeeeestvtielee.egggTrltltht 97
                + +++    W                                                          ++i  e+   gg r++l  +
  KIR63324.1 52 WWRSDSAPGW---------------------------------------------------------SAEIRVEPaDAGGARVRLDLA 82
                3333333334.........................................................444444443344444444443 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   3.1e-05      0.14       1      54 [.       9      54 ..       9     109 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.1e-05
                    ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE...EEEECSTTSSCEEEE CS
  Polyketide_cyc  1 vpapadqvyalvadvesypeflphcssvevleeaesglsadlevgfggltesft 54
                    ++ap+++v++  +d ++   +lp+  ++   ++ e        v  g l++ + 
      KIR63324.1  9 MSAPPEVVFSTATDPDRAAAWLPEPLRSDGDSRPE--------VDAGDLRAWWR 54
                    68*********************766554444444........44444444444 PP

>> ADC  Acetoacetate decarboxylase (ADC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.3e-05      0.19      23      49 ..      16      44 ..       6      47 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.3e-05
                EEEEEE-HHHHHTTSBTTEEECS..TSEE CS
         ADC 23 tvsyrtdpeaaaallPepLelae..rplv 49
                ++s  tdp++aaa lPepL+ +   rp+v
  KIR63324.1 16 VFSTATDPDRAAAWLPEPLRSDGdsRPEV 44
                67889***************998888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 877.74
//
Query:       KIR63325.1  [L=179]
Description: hypothetical protein TK50_21030 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-38  130.4   0.0    5.3e-38  129.1   0.0    1.6  2  DUF1360   Protein of unknown function (DUF1360)


Domain annotation for each model (and alignments):
>> DUF1360  Protein of unknown function (DUF1360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.16   2.9e+03      75      94 ..      15      34 ..      10      42 .. 0.77
   2 !  129.1   0.0   2.9e-42   5.3e-38       1     101 [.      64     164 ..      64     165 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.16
     DUF1360 75 lvlaPrltrlvalilaiaga 94
                 ++aP+  r++   la++g 
  KIR63325.1 15 QAYAPHEHRPLGGYLAAMGT 34
                57889999999999999886 PP

  == domain 2  score: 129.1 bits;  conditional E-value: 2.9e-42
     DUF1360   1 llalAtfrltrlivkdkitsflRapFteekeekdegeveeevrikgkgvrkaiGeLlsCpfClgvWvaaalvlglvlaPrltrlvalilaiagaadile 99 
                 lla+At++l+rl+ kd++ts+lRapFt+++++ ++gev+e+vr +g+ +r+aiGeLlsCpfCl+vWva++l+ glvlaPrltrlva++l++++a+d+l+
  KIR63325.1  64 LLAIATHKLSRLLSKDAVTSPLRAPFTRYDHPIGSGEVMEQVRDSGSPTRHAIGELLSCPFCLAVWVATGLTGGLVLAPRLTRLVATALTAVAASDFLQ 162
                 79************************************************************************************************9 PP

     DUF1360 100 la 101
                 + 
  KIR63325.1 163 MG 164
                 85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1197.57
//
Query:       KIR63326.1  [L=65]
Description: hypothetical protein TK50_21035 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       166  (0.00925874); expected 358.6 (0.02)
Passed bias filter:                      127  (0.0070835); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 464.17
//
Query:       KIR63327.1  [L=84]
Description: hypothetical protein TK50_21040 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.34s 00:00:00.87 Elapsed: 00:00:00.55
# Mc/sec: 462.26
//
Query:       KIR63328.1  [L=88]
Description: hypothetical protein TK50_21045 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       190  (0.0105974); expected 358.6 (0.02)
Passed bias filter:                      101  (0.00563333); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 685.40
//
Query:       KIR63329.1  [L=369]
Description: phospho-2-dehydro-3-deoxyheptonate aldolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-92  308.2   0.0    4.3e-92  307.9   0.0    1.0  1  DAHP_synth_1  DAHP synthetase I family


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.9   0.0   2.4e-96   4.3e-92      10     273 ..      49     342 ..      33     344 .. 0.97

  Alignments for each domain:
  == domain 1  score: 307.9 bits;  conditional E-value: 2.4e-96
                   HCCCTTTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S.SSTTS-SHTTHHHTHHHHHHHHHHH.............T-EE CS
  DAHP_synth_1  10 diliGkddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKpRrstvgfkGlindpdlkilsrikkel.............glpi 93 
                   ++l   ddrllv++GPCs++dp aaleyA+rl  ++++l+ddl i+mr+yfeKp rstvg+kGlindp l+++ +++ +l             glp+
    KIR63329.1  49 RVLDRADDRLLVVVGPCSVHDPAAALEYAARLRTVADRLADDLLIVMRVYFEKP-RSTVGWKGLINDPALDGSGDVNTGLrtarallldvlrlGLPV 144
                   566778************************************************.****************************************** PP

                   EEEESSCCTHHHHHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TT....HHHHHHHHHHHHHHHTTE.........EE--EEEEEEEEEEST CS
  DAHP_synth_1  94 atevldpisvqyladvvdiiqiGArttesqdllelasglskpvglKngtd....vaidemkaaaekilflgv.........etkgiilcerglrggk 177
                    +e+ldpi++qy+ad+v++++iGArt+esq++++lasgls+ +g+Kn  d    +a+d+++aa  +++f g+         +t+g+ ++++ lrgg+
    KIR63329.1 145 GCEFLDPITPQYIADTVAWGAIGARTVESQVHRQLASGLSMAIGMKNRPDgsigTAVDAIRAAGVPHVFPGIdvsgtpaimHTRGNADGHLVLRGGN 241
                   ************************************************************************************************* PP

                   .SSSSSCHCHHHHHHHHHHCTSS.-EEEESCHHHTTCGGGGHHHHHHHHHHHHHTT...ESEEEEEBBSSCCC-SSTGGGGBBCTCBHHHHHHHHHH CS
  DAHP_synth_1 178 .ktnrdvedvaavkilkeetgkl.pvmvDvsHansrkdykrqkkvlklakaaiaaG...iaGvmiEshlnpgkalsdgkqalkygksetdacilkel 269
                    ++n+d+++vaa+ ++++++g + +v+vD+sHans kd++rq+ v+++++a++aaG   i Gvm+Es+l pg++++d   +l+yg+s+tdac+++++
    KIR63329.1 242 dGPNYDAASVAAALAQLRAAGLPeRVVVDASHANSGKDHRRQPLVAADVAAQLAAGqrgIVGVMLESFLLPGRQDLDPTRELEYGRSITDACLGWDD 338
                   ********************8779************************************************************************* PP

                   HHHH CS
  DAHP_synth_1 270 tell 273
                   te +
    KIR63329.1 339 TEGV 342
                   9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2862.90
//
Query:       KIR63330.1  [L=71]
Description: hypothetical protein TK50_21060 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 517.56
//
Query:       KIR63331.1  [L=430]
Description: peptidase M16 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-22   80.6   0.0    1.8e-22   80.0   0.0    1.2  1  Peptidase_M16    Insulinase (Peptidase family M16)
    1.4e-21   77.3   0.0    2.7e-21   76.4   0.0    1.5  1  Peptidase_M16_C  Peptidase M16 inactive domain


Domain annotation for each model (and alignments):
>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0     2e-26   1.8e-22       2     118 ..      21     139 ..      20     146 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 2e-26
                    EEEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHH.. CS
  Peptidase_M16   2 valesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvf.. 95 
                    v+  +d +a+++av l+ d+GSr+ep+ + G AHl eh++f g+ +  + + ++ ++  GgslnAtt  ++t+Y+ +v++++le al + ad +  
     KIR63331.1  21 VVVSEDRTAPAVAVNLWYDVGSRHEPDGQTGFAHLFEHLMFEGSVNVAKTEHMKLVQGAGGSLNATTNPDRTNYFETVPAEHLELALWLEADRMgg 116
                    6667777********************************************************************************999999944 PP

                    HSBTTSHHHHHHHHHHHHHHHHH CS
  Peptidase_M16  96 kaplleesevererkvvekevea 118
                      p+l++++++ +r+vv++e+ +
     KIR63331.1 117 LVPALTQETLDNQRDVVKNERRQ 139
                    568************99999865 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   3.1e-25   2.7e-21       4     182 ..     180     359 ..     177     360 .. 0.84

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 3.1e-25
                      HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSS.SSEEEEEEEEEECTCTHTTH CS
  Peptidase_M16_C   4 redlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkklde.eqahlslafegpskendedd 96 
                      +  +++f++++Y p+n+vl +vGd    e+ +l++kyfg ++a++  pa p g+ ++     + pv    +   + + + +a ++++   ++ +
       KIR63331.1 180 LATFQAFHRTYYAPNNAVLTVVGDAAAAEVFALADKYFGAIPARESIPAAPDGRHVP---RAGAPVAETVTAAvPAPRVFVAHRTHPF-GTPGY 269
                      5679***************************************97544444444444...556666666665458*************.***** PP

                      HHHHHHHHHHHSSTTSHHHHHHHTTTTS..ESEEEEE.EEEESSCEEEEEEEEEECTTHHH.HHHHHHHHHHHHHHHTS-HHHHHHHHHH CS
  Peptidase_M16_C  97 lalavlntlLgggmesrLytnlrekegl..aysvsaf.ndsyrdsglfgisatadpenvee.vvevilkelrklkkeglteeeleraknq 182
                       +l vl+t+Lg+g  srLy++l + e l   + v+a+ +d       + ++ata p+ + e + + + +++++l++  +t +el+rak+ 
       KIR63331.1 270 DVLTVLATVLGSGRGSRLYQRLADGERLaqPDLVGAYgVDLRHAPAPLIVTATARPGVTGErLAAGVAEVVDELATVPVTAAELDRAKAL 359
                      ***********************999996656788886666668899**********77772555577777788888***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3018.96
//
Query:       KIR63332.1  [L=448]
Description: peptidase M16 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-12   47.8   0.0    1.5e-11   44.7   0.0    2.3  3  Peptidase_M16_C  Peptidase M16 inactive domain
    1.8e-08   34.5   0.0    2.7e-08   33.9   0.0    1.2  1  Peptidase_M16    Insulinase (Peptidase family M16)


Domain annotation for each model (and alignments):
>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.1   8.9e+02      90     165 ..      50     126 ..       7     139 .. 0.66
   2 !   44.7   0.0   1.6e-15   1.5e-11       2     180 ..     185     358 ..     184     359 .. 0.93
   3 ?   -2.1   0.0      0.37   3.3e+03       5      27 ..     405     427 ..     402     431 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.1
                      T....CTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTS.ESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHH CS
  Peptidase_M16_C  90 k....endeddlalavlntlLgggmesrLytnlrekegl.aysvsafndsyrdsglfgisatadpenveevvevilkelrk 165
                           e+  +    avl+  L++g  +r  t++     l ++  + +++ + d   f +s+++  e++  +ve++ +++r 
       KIR63332.1  50 AgagrEPVGREGLGAVLAKALEEGTAQRDATAYA----LaIEALGTELVTGLDWDSFQVSVQVPVERLGAAVELLAEAVRT 126
                      3555666666777778888888886666666666....5466666666666677779999999999999999988887765 PP

  == domain 2  score: 44.7 bits;  conditional E-value: 1.6e-15
                      H-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSS.SSEEEEEEEEEECTCTHT CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkklde.eqahlslafegpskende 94 
                      l+ ed+  f+ +++     +l+++Gd+d  +l +l  + f + +     ++ p ++p +++   +++++l +++   q+ l l+  +p +  ++
       KIR63332.1 185 LDPEDVTVFHSEWFLRPG-TLVVAGDLDRLDLDALGAAAFAGTGG----GPTPVEGPIDVPLRAGRRIILVDRPGsVQSTLRLGHAAPHR-AHP 272
                      567788888888877665.7999**************99999997....88999999999999**********99899999999999999.*** PP

                      THHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS-HHHHHHHH CS
  Peptidase_M16_C  95 ddlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkkeglteeelerak 180
                      d+ ++a+  t+Lgg+ +srL++ +re +g +y++  ++ s r  g f +s  +++  +++++  ++ e+ + +  g+te+el  a+
       KIR63332.1 273 DHVPMALAGTVLGGAFTSRLNHLIREVRGYTYGIRGDFASSRRFGRFAVSSGVQTAVTAPALVEAVGEITRTRAGGVTEDELAVAR 358
                      *********************************************************************************98765 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.37
                      HHHHHHHHHHSSGGGEEEEEEES CS
  Peptidase_M16_C   5 edlkefykkfYrpenmvlaivGd 27 
                       ++ +   ++ +pe ++l++ Gd
       KIR63332.1 405 AEVSAAAATHLHPESLTLVVEGD 427
                      677788899**********9997 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0     3e-12   2.7e-08       1     134 [.      30     163 ..      30     177 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 3e-12
                    EEEEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHH CS
  Peptidase_M16   1 rvalesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfk 96 
                    rv++ + p ++ + + l  daG+  ep   +Gl   l + +  gT+++++ ++a  +e+lG +l    + +     v+v+ + l  a+++la+ ++
     KIR63332.1  30 RVVAAHLPGQNLAVALLLLDAGAGREPVGREGLGAVLAKALEEGTAQRDATAYALAIEALGTELVTGLDWDSFQVSVQVPVERLGAAVELLAEAVR 125
                    689999999999************************************************************************************ PP

                    SBTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH CS
  Peptidase_M16  97 aplleesevererkvvekeveavdaepekvveenlhaa 134
                     p+l+++++ r r+     + + +a+p  ++e +l a+
     KIR63332.1 126 TPKLDPDDLRRVRDDEATALRMDWANPGPRAEAALRAD 163
                    ***********777655555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3197.93
//
Query:       KIR63333.1  [L=341]
Description: aspartate-semialdehyde dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-50  171.4   0.0    2.7e-50  171.0   0.0    1.2  1  Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation dom
    1.2e-31  109.7   0.1    2.3e-31  108.7   0.1    1.5  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
  ------ inclusion threshold ------
       0.15   11.6   0.0        0.5    9.9   0.0    1.8  2  Gp_dh_C          Glyceraldehyde 3-phosphate dehydrogenase, C-


Domain annotation for each model (and alignments):
>> Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.0   0.0   4.6e-54   2.7e-50       1     184 []     136     323 ..     136     323 .. 0.99

  Alignments for each domain:
  == domain 1  score: 171.0 bits;  conditional E-value: 4.6e-54
                      HHHHHHCTT.EEEEEEEEEEEGGGCHHHHHHHHHHH...........HHHHHHSTTS.CTTTSSHHTTSEESTCSTBTTTTCHCBHHHHHHHHH CS
  Semialdhyde_dhC   1 LkPLldalgelervivatyqavSGaGkkgvreLlkq...........vaelqrsdeakpgvfgvpiagNlipyidkeedkgepetreelkavae 83 
                      L PL+++ +el +++v+tyqavSGaG +gv+eL +q           + + ++ + + p+vf + ia+N++p++++ +d+g+ et+ee+k ++e
       KIR63333.1 136 LRPLHAE-AELVSLVVSTYQAVSGAGLAGVAELEEQvrkvaeqaaglAFDGTAVEFPAPRVFARTIAFNVLPLAGSIVDDGSAETDEEQKLRNE 228
                      89****9.***************************************9********************************************** PP

                      HHHHCTESC.SEEEEEEEESBSSEEEEEEEEEESSSHHHHHHHHHHHHCSTTEEEEESSHCHHSSHHHHTTCSSSEEEEEEEEETTCTTEEEEE CS
  Semialdhyde_dhC  84 tkkilefte.kvsatcvrVPvlrGhseavtiklklkdveveeveellaaapevkvvvneeedrPtpaavaggtnsvsVGRirkdemgdeglklv 176
                      ++kile +  kvs+tcvrVPv++Ghs  +++++ +++v+ ++++ell  ap+v++ +      Ptp+++ag ++ ++VGRir de++++gl l+
       KIR63333.1 229 SRKILEIPGlKVSGTCVRVPVFTGHSLQINARF-ARPVTPQRARELLDGAPGVALSDV-----PTPLQAAG-HDPTYVGRIRADETVEHGLSLF 315
                      *********************************.5*********************99.....9******9.8********************* PP

                      EEEETTTT CS
  Semialdhyde_dhC 177 vvgDNllk 184
                      +++DNl+k
       KIR63333.1 316 CSNDNLRK 323
                      ******97 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   0.1   3.9e-35   2.3e-31       1     118 [.       2     114 ..       2     117 .. 0.97

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 3.9e-35
                     EEEEETTTSHHHHHHHHHHHC.TSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTSEEE CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLee.hpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapklaeagvkvi 94 
                     +++ivGatG vG ++ ++L+e ++++e v+l++s+rsaG+++  +      g ++++ed+ +++ +++div++++++g++ elap++a+ag++vi
      KIR63333.1   2 RIGIVGATGQVGGVMRQVLAErEFPAEQVRLFASARSAGRTVPWR------GGEVTIEDAATADYAGLDIVLFSAGKGTALELAPRVAAAGAVVI 90 
                     69*******************************************......56****************************************** PP

                     ESSSTTTTSTTSEBE-HHHHGGGG CS
  Semialdhyde_dh  95 DlssdfRlkddavyvlpevnreai 118
                     D+ss+fR+++d+++v++evn++a 
      KIR63333.1  91 DNSSAFRMDPDVPLVVAEVNPHAA 114
                     *********************986 PP

>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.85   5.1e+03      71      89 ..     182     200 ..     168     204 .. 0.68
   2 ?    9.9   0.0   8.4e-05       0.5      70     111 ..     238     279 ..     230     288 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.85
                 TEEEEEEEESSSSEEEEEE CS
     Gp_dh_C  71 kldglAvrVPtpnvsvvdl 89 
                  +dg+Av  P p v +  +
  KIR63333.1 182 AFDGTAVEFPAPRVFARTI 200
                 5789999999988866555 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 8.4e-05
                 TTEEEEEEEESSSSEEEEEEEEEESSTS-HHHHHHHHHHHHH CS
     Gp_dh_C  70 gkldglAvrVPtpnvsvvdlvvelekevtveevnaalkeaae 111
                  k++g+ vrVP+ +++  ++  +++++vt +   ++l+ a+ 
  KIR63333.1 238 LKVSGTCVRVPVFTGHSLQINARFARPVTPQRARELLDGAPG 279
                 5899************************99988888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2346.29
//
Query:       KIR63334.1  [L=138]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-22   79.0   6.9    2.6e-11   43.8   0.2    2.2  2  CBS       CBS domain
     0.0068   17.0   0.2     0.0084   16.7   0.2    1.1  1  GAF       GAF domain


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   2.0   1.9e-13   1.7e-09       1      52 [.       4      54 ..       4      56 .. 0.92
   2 !   43.8   0.2   2.9e-15   2.6e-11       3      52 ..      71     119 ..      69     123 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 1.9e-13
                HHHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHH CS
         CBS  1 VgdimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDll 52
                Vg++mt+++vt +  +tl  a+++mr+++++ + V+ +d+ +vGivt+rD++
  KIR63334.1  4 VGEFMTTRLVTMDGHETLTAAAREMRDSAIGDVVVTAGDD-VVGIVTDRDIA 54
                89************************999****4557788.*********97 PP

  == domain 2  score: 43.8 bits;  conditional E-value: 2.9e-15
                 HHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHH CS
         CBS   3 dimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDll 52 
                 +i +rdv+tv+  ++   a++lmr ++v+rlPV+ +dg+lvG+v++ Dl+
  KIR63334.1  71 QITSRDVITVSQYDDAVAAADLMRTYAVRRLPVI-DDGRLVGLVSMGDLA 119
                 6789*******************9888*******.6************97 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   9.3e-07    0.0084       1     109 [.      16     117 ..      16     131 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 9.3e-07
                 SHHHHHHHHHHHHHHHHTESEEEEEEEEETTEEECEEEEECC..EEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEE CS
         GAF   1 dleelldtvveelrellgadrvalylpdydGlhydipqasrw..lfmkngrgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPlvn 97 
                 d +e+l  +++e+r+    d v+   +d  G+ +d + a r    +m +++++ +q ++++++++++   + ++  +    dl++ + +r    +P+++
  KIR63334.1  16 DGHETLTAAAREMRDSAIGDVVVTAGDDVVGIVTDRDIAVRGvaEEMDPNTTRLNQ-ITSRDVITVS---QYDDAVA--AADLMRTYAVR---RLPVID 105
                 67899999999999777777777755677775444555555566555555554665.6669999999...5555555..34566666665...9***** PP

                 TTEEEEEEEEEE CS
         GAF  98 dgelwGllvlhn 109
                 dg+l+Gl++  +
  KIR63334.1 106 DGRLVGLVSMGD 117
                 ********9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1046.18
//
Query:       KIR63335.1  [L=123]
Description: sterol-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-14   52.5   0.0    6.8e-14   52.2   0.0    1.1  1  SCP2             SCP-2 sterol transfer family
  ------ inclusion threshold ------
      0.055   14.3   1.4      0.077   13.9   1.4    1.3  1  MDMPI_C          MDMPI C-terminal domain
       0.07   12.7   0.0      0.084   12.5   0.0    1.1  1  Anemone_cytotox  Sea anemone cytotoxic protein
       0.16   12.2   0.0       0.19   12.0   0.0    1.1  1  Alkyl_sulf_C     Alkyl sulfatase C-terminal


Domain annotation for each model (and alignments):
>> SCP2  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   1.5e-17   6.8e-14       8     100 ..      12     105 ..       6     106 .. 0.91

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 1.5e-17
                 HHHHHHHHHHCCH-EEEEEEECTC.T..EEEEEETTSTEEESSCTTBS-SEEEEEEHHHHHHHHCTSS-HHHHHHTTSSEEEC-HHHHHHHHHHH CS
        SCP2   8 lkdpekkealkklagvlrfdltdlkg..sltldlkegqldvaakdegkadvtlslsledllelaegklnpqkafmqgkLkieGDielaqkleall 100
                 l+   ++++l k++g++rfdl ++++  ++++ ++ g+++v+++d ++ad+++  s+  + +la g++++ +a++ g ++++GD+ l+ ++e+l+
  KIR63335.1  12 LDRRGYEPLLVKTTGTIRFDLHEGPQttHWLVAIDRGRISVSQED-READTVVNTSPVLFEDLAAGREDGIAAILRGDMTVSGDARLVVQVERLF 105
                 4434899**************999999**************7764.7*********************************************998 PP

>> MDMPI_C  MDMPI C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.4   1.7e-05     0.077      29      89 ..      32      98 ..       3     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
     MDMPI_C 29 elegprtvhlhatdggra.rlalwadgadatvrGtaadlllllwGRlspddt.....levdGdrall 89
                  egp+t+h+ ++ ++ +  +++ + +ad++v  ++  +  l++GR ++ ++     ++v+Gd++l+
  KIR63335.1 32 LHEGPQTTHWLVAIDRGRiSVSQEDREADTVVNTSPVLFEDLAAGREDGIAAilrgdMTVSGDARLV 98
                345677777777766655555544444***********************99999999****99986 PP

>> Anemone_cytotox  Sea anemone cytotoxic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.9e-05     0.084     112     176 .]      38     103 ..      27     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.9e-05
                      --EEEEEEESSSS--SHHH.HHHHHCTSS-EE-SSCEEEEEECTTEEEEEEEESSSCEEEEEEEEE CS
  Anemone_cytotox 112 snwwnvkiykgkrradqkm.yeelyynlnpirgdngwekrnlgyglklrglmtsageakleikisk 176
                      +  w v i +g+    q+    +   n++p+  ++    r+ g    lrg mt +g+a+l++++++
       KIR63335.1  38 TTHWLVAIDRGRISVSQEDrEADTVVNTSPVLFEDLAAGREDGIAAILRGDMTVSGDARLVVQVER 103
                      5679999999998776654045788999***********************************986 PP

>> Alkyl_sulf_C  Alkyl sulfatase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.1e-05      0.19      35     110 ..      27     101 ..      18     110 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.1e-05
                   EEEEEETTT.T.EEEEEEEETTEEEE.ECT---TTSSEEEEE-HHHHHHHHTTSS-HHHHHHTTTEEEEE-TCHHHHH CS
  Alkyl_sulf_C  35 tinlvvtDv.d.ekyllrlsngvLthtrkaaqaddadltvtltreqLvalllgkatlgkevaagklkieGdaealakl 110
                   ti + + +  + +++l+ +  g +   ++  ++ +ad  v+++   +++l++g +   +++  g+++++Gda  + ++
    KIR63335.1  27 TIRFDLHEGpQtTHWLVAIDRGRISV-SQ--EDREADTVVNTSPVLFEDLAAGREDGIAAILRGDMTVSGDARLVVQV 101
                   55565555533259999999999999.54..5689********************999*************9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 888.08
//
Query:       KIR63336.1  [L=249]
Description: glycerol acyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-29  100.0   0.0    1.1e-28   99.5   0.0    1.2  1  Acyltransferase  Acyltransferase
  ------ inclusion threshold ------
      0.051   12.7   0.0      0.084   12.0   0.0    1.3  1  Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransfera


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.0   1.2e-32   1.1e-28       1     134 [.      23     149 ..      23     150 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 1.2e-32
  Acyltransferase   1 kvrvtglenlpekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegkl 94 
                      +++v+g++++p+ g+a+l++NH sylD+++  + +++s+  r v+++ak+e++  ++ g+lmr +++i+++R   + +ags+++++++l++g++
       KIR63336.1  23 RLTVEGSHHVPRTGGAVLASNHVSYLDFIFCGYGAHASG--RLVRFMAKHEVFAHKVSGPLMRGMKHIPVNR---RAGAGSYSTAVDALRRGEV 111
                      579******************************998887..89*****************************...889**************** PP

  Acyltransferase  95 vviFPEGtrsregellpfkkGlvrlaakakkgvpivPvai 134
                      v++FPE t sr++ +   k+G++r+a++a   vp++Pva+
       KIR63336.1 112 VGVFPEATISRSFTVKDLKNGAARMAQEA--AVPLLPVAL 149
                      *****************************..*******86 PP

>> Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.4e-06     0.084     100     240 ..      19     150 ..       8     161 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.4e-06
  Lip_A_acyltrans 100 eiakrveviglehikealaeeegvilllpHfanwelaglvlakqypglavvaenkknpllnqliislRerfggkl.lprkna...ikelikalr 189
                       ++ r++v+g +h+     +  g++l++ H  +++  +   + +  g+ v +  k  +++ +++    +r  +++ ++r ++      ++ alr
       KIR63336.1  19 VLDLRLTVEGSHHVP----RTGGAVLASNHVSYLDFIFCGYGAHASGRLVRFMAK-HEVFAHKVSGPLMRGMKHIpVNRRAGagsYSTAVDALR 107
                      567789999999999....999****************99999999987777666.889999987654444443324555446999******** PP

  Lip_A_acyltrans 190 kgevvvllpDqdlgrkdsvfvpfFgepaatttspaklalktkaavipvaii 240
                      +gevv++ p+  + r+       F +++    ++a++a +   +++pva +
       KIR63336.1 108 RGEVVGVFPEATISRS-------FTVKD-LKNGAARMAQEAAVPLLPVALW 150
                      ************9999.......55554.4567788888888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.33
# Mc/sec: 2244.84
//
Query:       KIR63337.1  [L=380]
Description: hypothetical protein TK50_21100 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   11.0   0.1       0.21   10.5   0.1    1.1  1  Melibiase  Melibiase


Domain annotation for each model (and alignments):
>> Melibiase  Melibiase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   1.2e-05      0.21     239     269 ..     256     285 ..     241     296 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 1.2e-05
   Melibiase 239 ssGGgrfDlGlleyvpqiWtsDntDaverlk 269
                  +GGgr D G +  v  +Wt+D++Dav rl+
  KIR63337.1 256 LAGGGRLD-GCVRTVRGSWTTDDSDAVVRLA 285
                 37*****9.88999**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 2897.34
//
Query:       KIR63338.1  [L=155]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-09   37.8   0.0    2.1e-09   37.6   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    9.2e-06   25.5   0.0    1.5e-05   24.8   0.0    1.3  1  FR47             FR47-like protein
    0.00038   20.8   0.0    0.00053   20.4   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0057   16.6   0.0     0.0084   16.1   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.012   16.3   0.1      0.018   15.8   0.1    1.3  1  Acetyltransf_3   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   5.9e-13   2.1e-09      38     117 .]      52     136 ..      14     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 5.9e-13
                     EEETTEEEEEEEEEEEET.....TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  38 aeedgeliGfisllkipd.....ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     +++++ l+Gf++++ + +     +   +  +++l ++ +++g+G+G+  ++a++e+ar++g + i+ + e+ +d+  ++Y +lGF
      KIR63338.1  52 VYDGDDLVGFLMGFFRIPwsedtPTDLRSGLWRLNIAADRQGRGYGRFAVRAVAEEARRRGERSIFTTWEPGQDGPEGFYLRLGF 136
                     456688*****999999999***99999************************************988665669999********9 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   4.3e-09   1.5e-05      22      79 ..      80     138 ..      72     143 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 4.3e-09
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-.EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiaergkt.vllvvvasNtpsirlyeklGfek 79 
                 + l  l +  + ++rG+g+  v+a+a+e ++rg+  ++  + ++ +  + +y +lGf+ 
  KIR63338.1  80 SGLWRLNIAADRQGRGYGRFAVRAVAEEARRRGERsIFTTWEPGQDGPEGFYLRLGFRP 138
                 56778899999********************887527899*****************96 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.5e-07   0.00053       8      76 .]      52     138 ..      36     138 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.5e-07
                     EEETTEEEEEEEEEEES...........TCTEEEEE-GGGTTSSHHHHHHHH..TT...SEEE.EE.EEEE..THHHHHHHHHHTTEEE CS
  Acetyltransf_7   8 aeddgkivGfialslld...........aeitrlaVdpeyrgkGiGraLlea..ae...kgii.le.qlel..naekaikfYeklGFee 76 
                     ++d++  vGf+    +              ++rl ++ + +g+G+Gr  ++a  +e   +g +  + +++   ++   ++fY +lGF++
      KIR63338.1  52 VYDGDDLVGFLMGFFRIpwsedtptdlrSGLWRLNIAADRQGRGYGRFAVRAvaEEarrRG-ErSIfTTWEpgQD-GPEGFYLRLGFRP 138
                     66777777777666666777777766655555588****************7552245555.2222334443322.6688*******85 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.3e-06    0.0084      53     112 ..      81     142 ..      49     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.3e-06
  Acetyltransf_10  53 hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkavgee 112
                       + +l ++ + +g+G+g+  + av eea+++g +   +t +  +   ++fY +lGF+++ge 
       KIR63338.1  81 GLWRLNIAADRQGRGYGRFAVRAVAEEARRRGERSiFTTWEPGQdGPEGFYLRLGFRPTGER 142
                      67789999********************99999966556655555889***********886 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   0.1   4.9e-06     0.018       4     112 ..       6     112 ..       5     137 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.9e-06
  Acetyltransf_3   4 LrplteeDlealfelrsdpevmry.lpepltleeaeewlerawaeeseeegygwaivlkdtgviGsv.glrdleeedee...aelgym...laps 90 
                     L  +t++ l+a +elr +p+ ++   p  ++l+ea+ w   aw           ++ + d+  +G+  g++++++++++   +  g++   +a +
      KIR63338.1   6 LETITPANLDAACELRIRPDQEHLvEPVARSLAEAYVWPGIAW---------PRLVYDGDD-LVGFLmGFFRIPWSEDTptdLRSGLWrlnIAAD 90 
                     5667777777777776666655544556777777776666334.........335544555.788877888888887778885555443336777 PP

  Acetyltransf_3  91 fwgkGyateavralleyafeel 112
                      +g+Gy++ avra+ e a ++ 
      KIR63338.1  91 RQGRGYGRFAVRAVAEEARRRG 112
                     89************99995443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1241.77
//
Query:       KIR63339.1  [L=250]
Description: deaminase/reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-17   63.3   0.1    4.5e-17   62.5   0.1    1.3  1  RibD_C    RibD C-terminal domain


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.1   2.5e-21   4.5e-17       2     179 ..       3     183 ..       2     186 .. 0.88

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 2.5e-21
                 EEEEEEEEETTSBSSC..TTSSGCTSS-HH..............................HHHHHHHHHHTSSEEEEEHHHHHHHT--SS--SSCHSCH CS
      RibD_C   2 yvilklavSlDGklaa..aggeskwitgee..............................aradvhelraeadailvGrgtvladnpsltvrwvkkrea 68 
                 +v+++l vSlDG  a   ++g+++w+ + e                              +  +v e +  a+a ++Gr++  +        w ++ ++
  KIR63339.1   3 KVTAQLSVSLDGCYAGprHTGDGDWMDSAEsagffrvtrwvtnamawrerqgfaggeqdaNSDIVAESFGTAGAYVMGRRMADGGEI----PWGDE-PP 96 
                 89************97225788888887779****************************99999*****************999888....45544.55 PP

                 HHTT.GSS-EEEEEETTS-S-TTSHHHHSS.S-EEEEESSCSCHHHHHHCCESE-HHHHHHHHHHT.T--EEEEEETHHHHHHHHHTTT-SEEEEEEES CS
      RibD_C  69 eadaearqpvrvVvdstlrvpldakvltdd.aptlvatteeadkekveklkvrvdlkelleeLker.girsllveGGatLagsllraglvDelrlyiaP 165
                          + +Vv+++ r     ++++++  + + +t                  ++++++ +++ g+r++ v GG++L+++ lragl+Del l+i+P
  KIR63339.1  97 ------FRAPVFVVTHRPR----ETLVRGGgTSFTYVTDG---------------VVSAVAQARAAaGGRDVAVAGGGSLVRQVLRAGLLDELELHIVP 170
                 ......78889******99....45577775555555555...............9*********99******************************** PP

                 CE--TTSBCSSSSS CS
      RibD_C 166 kllGgagktlfdge 179
                 ++lGg g +lfd +
  KIR63339.1 171 VVLGG-GLRLFDAG 183
                 *****.****9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2022.79
//
Query:       KIR63340.1  [L=208]
Description: hypothetical protein TK50_21115 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-13   48.7   2.9    1.1e-12   47.9   2.9    1.4  1  DUF402    Protein of unknown function (DUF402)


Domain annotation for each model (and alignments):
>> DUF402  Protein of unknown function (DUF402)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   2.9   6.2e-17   1.1e-12       4      68 .]      80     143 ..      77     143 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 6.2e-17
                 EEEE-TT-SEEEEEEEETTTEEEEEEEEEES--EE...E.EEE-EEEEEEESEEE......-HHHH CS
      DUF402   4 lwllplglwynvfhfldgdgrlqglYvDiatppevge.gawktiDlyLDlvvspdgevevlDedEL 68 
                 l l+ +++ ++v++f+ ++  ++g+Yv+++tp  +   g ++t+Dl LD+v+ p++++   DedEL
  KIR63340.1  80 LVLMLPEASHSVWWFFAES-GFVGWYVNLETPYVR-HvGGVDTTDLLLDVVIDPQRNWWWKDEDEL 143
                 566778999*********8.9***********777.5588***********99999*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1676.47
//
Query:       KIR63341.1  [L=160]
Description: hypothetical protein TK50_21125 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-31  107.7   0.2    6.2e-31  107.5   0.2    1.0  1  DUF488    Protein of unknown function, DUF488


Domain annotation for each model (and alignments):
>> DUF488  Protein of unknown function, DUF488
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.2   3.4e-35   6.2e-31       1     121 [.      22     143 ..      22     144 .. 0.96

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 3.4e-35
      DUF488   1 slervydllkkdgvrvlvDVRlwPrSrnpgfskealkedlkeagiaYvwlkelgpsrelrkwfkhdp.rweefferYaaeleskeaakealeelkelak 98 
                 s+++++  l    v  lvDVR++P Sr++gfsk+al+++l+++gi Y + +elg+++e r  f+ +  + e  +++Ya  l + ++ ++al+ l+e+a+
  KIR63341.1  22 SIDEFVRELSGLRVARLVDVRMTPISRKRGFSKTALSQALAAQGIVYEHHRELGNPKENRPGFGGNSqELESARAAYASRLHR-AESRAALDALAEAAQ 119
                 58999999********************************************************77768*************9.99************* PP

      DUF488  99 kg.vaLlcaekdperchrvvlaey 121
                 ++ vaLlc+e+d++rchr+vl  +
  KIR63341.1 120 RElVALLCFEADESRCHRRVLMHA 143
                 ********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1234.49
//
Query:       KIR63342.1  [L=231]
Description: hypothetical protein TK50_21130 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.3   10.7   2.4        0.3   10.7   0.1    2.1  2  AOC_like  Allene oxide cyclase barrel like domain


Domain annotation for each model (and alignments):
>> AOC_like  Allene oxide cyclase barrel like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   1.7e-05       0.3      60     120 ..      44     107 ..      39     110 .. 0.88
   2 ?   -0.8   0.4     0.059   1.1e+03      87     108 ..     110     131 ..     106     136 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.7e-05
                 EEEEEETTEE...EEEEEEEEHHHHHTT-EEEEEEEE-SGGGTT-EEEEEEEEEETTTEEEEEE CS
    AOC_like  60 reeitleDGt...irvaGlvdltaltagewatlpavGvgGryaGlvGfrqlrlveprkeyeasi 120
                 r+ i l++G     +++G+  + +l+    ++l a  ++G + G vG+ +lr   ++++  a +
  KIR63342.1  44 RDVIDLDEGDresTEAGGVTPDRSLVRRRNVRLVAALLAGVVLGGVGVNELRDARDERQHSAAV 107
                 5678899997777999************************************998887777766 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.059
                 EEEEEEE-SGGGTT-EEEEEEE CS
    AOC_like  87 atlpavGvgGryaGlvGfrqlr 108
                   +pa G gG   G  G++q+ 
  KIR63342.1 110 LAFPASGGGGGGSGVEGVLQMD 131
                 579**************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1756.19
//
Query:       KIR63343.1  [L=474]
Description: Ricin B lectin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-17   61.9   1.5    3.7e-14   53.1   0.0    2.7  2  Glyco_hydr_30_2  O-Glycosyl hydrolase family 30
    5.3e-12   45.8   0.1    1.3e-11   44.5   0.1    1.7  1  Glyco_hydro_30C  Glycosyl hydrolase family 30 beta sandwich d
    8.9e-09   35.0   0.0    1.5e-08   34.2   0.0    1.3  1  Glyco_hydro_59   Glycosyl hydrolase family 59
    2.5e-08   33.3   0.2    4.7e-08   32.4   0.1    1.5  2  Glyco_hydro_30   Glycosyl hydrolase family 30 TIM-barrel doma
  ------ inclusion threshold ------
       0.11   12.6   0.0        0.3   11.1   0.0    1.7  1  PepSY_2          Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> Glyco_hydr_30_2  O-Glycosyl hydrolase family 30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0     1e-17   3.7e-14       4     204 ..      38     235 ..      35     246 .. 0.81
   2 !    6.5   0.7    0.0015       5.3     330     356 ..     324     350 ..     297     359 .. 0.84

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 1e-17
                      EEEEEEEEEEE--EEEEE-TTTHHHHHHHS-HHHHHHHHHHHH---B-TTS-B-S---S-EEEE---STTTTTTSS.--SSSTT----SB-TTS CS
  Glyco_hydr_30_2   4 isidlqeeyqtidsfgasDaWsakfvGkkapeekknkiadlLfsketdenGnPkGigLslWrfniGaGsteqgeas.eitdewrreecfleadG 96 
                      + +d  e  q id fg s a++ + + ++  e+k+ ++ dlL+ +        kG + ++ r+ iG+ +t+  ++  +i+     +    +a  
       KIR63343.1  38 LDLDRAEIHQSIDGFGYSIAFQRATLVHNLSEAKRAEVLDLLLDR-------RKGAAPTILRLGIGSSTTDVYDNMlSIQ---PTDPGGPAATP 121
                      66789999****************999***************975.......5899999******998887655431333...33444556778 PP

                      -B-TTSSH.HHHHHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SS.....S-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-T- CS
  Glyco_hydr_30_2  97 kydwtkqe.GqqWflkaakerGveefLgfsnsaPvqmtkngkavstkek.....elnlkadkiddfadflvkvadkfrkegvkfdylsPvnePq 184
                      +y+w+  + Gq W+ k a++rG+++f + + saP  m  ng   + ++       +  + d  +++a++lv+ a+ +r+eg+++d +  +neP 
       KIR63343.1 122 NYQWDGWDgGQVWYAKEARKRGINRFYADAWSAPGYMKDNGTDANGGSLcglsgVTCASGDWREAYARYLVQYAKFYRQEGIRIDEIGFTNEPD 215
                      9***98762689***************************99887766552111123345567899***************************** PP

                      GGG--.SS-B----HHHHHH CS
  Glyco_hydr_30_2 185 WdwgegsqeGtpatnediaa 204
                      W++  +s   tpa+ ++  +
       KIR63343.1 216 WTAPYASMRFTPAQAAEFVK 235
                      ***99998888887776554 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0015
                      HHHHHHHHHHHHHTS--SEEEEEESEE CS
  Glyco_hydr_30_2 330 gLyvakvihnDLtlanasaWqWWlavs 356
                      g+ va+ ih+ L+ a+asa+ +Wl  s
       KIR63343.1 324 GIAVAQRIHDTLAKADASAFVYWLGSS 350
                      788********************9766 PP

>> Glyco_hydro_30C  Glycosyl hydrolase family 30 beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.1   3.6e-15   1.3e-11       1      65 []     386     469 ..     386     469 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 3.6e-15
  Glyco_hydro_30C   1 GavRigtsgspsvssnvetvAFlnpDGsivvvilNrsessvtitvs......................dsskskgslsv..parSivTv 65 
                      GavRig+ g+p    ++ ++A++n DG+ vv+++N+s+++v  tv+                         +++++ +v  p+rS +T+
       KIR63343.1 386 GAVRIGVDGAPA---GLAVSAYRNADGTEVVQVINTSTEAVRTTVDlrrptayltdsthrleqvdglvS--GHGAHPTVelPPRSLTTL 469
                      9********965...5*****************************988999999877777776666431..2444444455******96 PP

>> Glyco_hydro_59  Glycosyl hydrolase family 59
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   4.2e-12   1.5e-08       2     252 ..      50     346 ..      49     358 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 4.2e-12
  Glyco_hydro_59   2 dGiGavsagatsrLLldYkeeqrseiLdyLFkpkfgaslqilkveiGgdanstsGtepshkrs........eeeladverGyefwlakeAkkrnp 88 
                     dG+G+  a   + L  +  e +r e+Ld+L + + ga+ +il++ iG+ +      + s + +        ++ + d   G + w akeA+kr  
      KIR63343.1  50 DGFGYSIAFQRATLVHNLSEAKRAEVLDLLLDRRKGAAPTILRLGIGSSTTDVYDNMLSIQPTdpggpaatPNYQWDGWDGGQVWYAKEARKRGI 144
                     7889888899999**********************************98765544444444431111000022233445677889*******988 PP

  Glyco_hydro_59  89 dikldileWgaPgwlk..................ksaekasektaeylkswlkgakktygldidyiaglrnek.............eydkdyvkt 152
                     + ++++ +W+aPg++k                   ++ +++e+ a+yl+++ k   ++ g++id i g  ne               + +++vk+
      KIR63343.1 145 N-RFYADAWSAPGYMKdngtdanggslcglsgvtCASGDWREAYARYLVQYAKFY-RQEGIRIDEI-GFTNEPdwtapyasmrftpAQAAEFVKV 236
                     7.89**************************999867899************9765.889*******.9777775555555555554556788888 PP

  Glyco_hydro_59 153 lrkaLdkngykkvklvaadeaatwsiakelakdselkdavdvvglHytteksssnaealgkplwasEd............lssknseegaldlar 235
                     l ++ +++g   v      ++++  +a+++++d+e ++ +d  + H  ++ s+    ++  p w++E             +  + + +  + +a+
      KIR63343.1 237 LGPVAERAGVGLVCCDSFGWQQSDAYAQAIEADPEARRHLDLFTGHGYASPSDRPLPTT-APTWMTEWapsstadgwneaW-DSGKGTDGIAVAQ 329
                     8888777776666666666777789*********************5555455333333.589999987777777765431.2222234788889 PP

  Glyco_hydro_59 236 rinknyvkgkmtkyilw 252
                     ri  + +k+ ++++++w
      KIR63343.1 330 RIHDTLAKADASAFVYW 346
                     99888888888888888 PP

>> Glyco_hydro_30  Glycosyl hydrolase family 30 TIM-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   1.3e-11   4.7e-08      85     236 ..     137     284 ..     128     318 .. 0.75
   2 ?   -3.1   0.0      0.82   2.9e+03     320     348 .]     355     383 ..     350     383 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.3e-11
                     HHHHHH-SS-EEEEEES---GGGBTTSSSSSS-BBSS-TTSH.....HHHHHHHHHHHHHHHHHHTT--ESEEESSSSGGGGGSTT-SSS--B-- CS
  Glyco_hydro_30  85 kraqkynqdlkllaapwaapgwlkttkavkGkGalkGkagdi.....yhkayakyfvkfleeyaksklsfwglsteneptaGsdkktklqslgft 174
                     k+a+k     +++a  w+apg++k +++    G+l G +g +     + +aya+y+v++ + y ++++++  +   nep        +  s+ ft
      KIR63343.1 137 KEARKRGI-NRFYADAWSAPGYMKDNGTDANGGSLCGLSGVTcasgdWREAYARYLVQYAKFYRQEGIRIDEIGFTNEPD----WTAPYASMRFT 226
                     44444433.3799**************99999999997664322222899*****************************5....568999***** PP

                     HHHHHHHHHHTHHHHHHTSTT.TTSEEEEEEEEG.GGTTHHHHHHHTSHHHHTTEEEEEEEET CS
  Glyco_hydro_30 175 aetqrdfikrdlGpalaassagknvkllilddnr.gnlpkwadvvlndkdaakyvsGiavhay 236
                     + +  +f+k  lGp  + +     v l+  d     +   +a+++ +d++a ++++  + h y
      KIR63343.1 227 PAQAAEFVKV-LGPVAERAG----VGLVCCDSFGwQQSDAYAQAIEADPEARRHLDLFTGHGY 284
                     ********86.999765443....445555443213344566666666666666666666655 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.82
                     --SEEEEGGGTEEEE-HHHHHHHHHHTTS CS
  Glyco_hydro_30 320 dapviafialaqfykqpmfyalahfskfi 348
                      a v ++ a + +     +ya+a +s+fi
      KIR63343.1 355 AALVQVDNATDSYRVSSRLYAFAAYSRFI 383
                     56677888999999999999999999997 PP

>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.4e-05       0.3       2      46 ..      13      56 ..      11      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.4e-05
     PepSY_2  2 aalalalallaaaAlAgrrdtdspkadwlpreklvakleaqGykv 46
                +a+a++++l++++A A  +    p + +l+r+++ +++ + Gy++
  KIR63343.1 13 TAVAAVTVLAGTPAHA-GTRPGPPLSLDLDRAEIHQSIDGFGYSI 56
                67777777777*****.88899999******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3576.06
//
Query:       KIR63344.1  [L=65]
Description: hypothetical protein TK50_21140 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-24   83.3   0.2      1e-23   83.1   0.2    1.0  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.2   5.7e-28     1e-23       1      53 [.       7      60 ..       7      61 .. 0.90

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 5.7e-28
      DUF397  1 atWrKSsySgggggnCVEvaalpd.avavRDSkdpdgpvLtftpaewaaFlagv 53
                a+WrKS++Sgg+ggnCVEvaa  +  v+vRDSkdp+gp+L f p++w++F+++v
  KIR63344.1  7 AVWRKSTRSGGSGGNCVEVAANLPgLVGVRDSKDPAGPALLFAPTAWTTFVSQV 60
                58*****************554444599***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       135  (0.0075297); expected 358.6 (0.02)
Passed bias filter:                      115  (0.00641419); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 516.61
//
Query:       KIR63345.1  [L=294]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-11   42.9   3.4    8.7e-11   42.0   0.5    2.8  2  HTH_31           Helix-turn-helix domain
     0.0096   16.0   0.8       0.08   13.1   0.1    2.7  3  FbpC_C_terminal  FbpC C-terminal regulatory nucleotide bindin
  ------ inclusion threshold ------
       0.12   12.4   0.1       0.69   10.0   0.0    2.2  2  HTH_19           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.5   1.5e-14   8.7e-11       1      60 [.      14      72 ..      14      74 .. 0.96
   2 ?   -0.1   0.1      0.21   1.2e+03      16      43 ..     127     154 ..     126     182 .. 0.74

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 1.5e-14
      HTH_31  1 aLGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpae 60
                +LG+lL +lRe a +s++++Ae l +s+ ++ r+E G  + ++  + +a++++++++++ 
  KIR63345.1 14 QLGRLLTQLREDASVSLDAAAEGLDCSRQKVWRIEKGLVP-VRVVDARAMCEIYRAPEDM 72
                79*************************************7.****************985 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.21
      HTH_31  16 sqeevAerlgvsestlsrlEqGrrgrps 43 
                 ++e +Ae+ +    t++  E+ +  +++
  KIR63345.1 127 TREYAAELFRRKNPTMTEAEREKLVEVR 154
                 6777888888888888888887766554 PP

>> FbpC_C_terminal  FbpC C-terminal regulatory nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   1.3e-05      0.08      23      41 ..     158     176 ..     145     181 .. 0.80
   2 ?   -1.3   0.0      0.42   2.5e+03      30      52 ..     213     235 ..     209     237 .. 0.81
   3 ?   -1.3   0.0       0.4   2.4e+03      40      50 ..     250     260 ..     245     263 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
                      TEEEEEEESS----TTTSE CS
  FbpC_C_terminal  23 qtVlTlnLpsAPvLsdGis 41 
                      q VlT  LpsAP+L +  s
       KIR63345.1 158 QHVLTRRLPSAPTLKAVLS 176
                      9*************88665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.42
                      ESS----TTTSEEEEEE-S-EEE CS
  FbpC_C_terminal  30 LpsAPvLsdGisaVlyLDGPalv 52 
                      L+  P L+   +  + LD P  +
       KIR63345.1 213 LAAGPPLASETGTFVMLDFPQAF 235
                      67789999999999999998765 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.4
                      SEEEEEE-S-E CS
  FbpC_C_terminal  40 isaVlyLDGPa 50 
                      i+  lyLD Pa
       KIR63345.1 250 ITGALYLDRPA 260
                      55679****98 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00012      0.69       1      35 [.      16      50 ..      16      67 .. 0.89
   2 ?   -0.8   0.2      0.27   1.6e+03      15      35 ..     272     292 ..     271     294 .] 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00012
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEng 35
                G+ L ++Re +  ++++ ae l+ sr k   iE+g
  KIR63345.1 16 GRLLTQLREDASVSLDAAAEGLDCSRQKVWRIEKG 50
                899******************************99 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.27
      HTH_19  15 qeelaerlgisrskisaiEng 35 
                 +e+la++   s ++i++i+ +
  KIR63345.1 272 LEALASDEAESEKMINMIIEE 292
                 68999999999******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2055.34
//
Query:       KIR63346.1  [L=100]
Description: hypothetical protein TK50_21150 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 759.00
//
Query:       KIR63347.1  [L=262]
Description: phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-33  115.2   1.0      5e-33  114.8   1.0    1.2  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   1.0   2.8e-37     5e-33      14     268 ..      14     260 ..       3     262 .] 0.80

  Alignments for each domain:
  == domain 1  score: 114.8 bits;  conditional E-value: 2.8e-37
                 HHHHHHHHHHTTTSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCCCT.SSSSSEEEEEEEEETHHHHHHT-SG-EEEEEE CS
  Inositol_P  14 akagevlreefsenelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakgekseltedgltwivDPiDGTknFvrgipqvaVsigl 112
                  + ++v+r ++++    i++ +     d++t ad a+e++i+++l++ +p++++lgee++++g     +++g++w+vDP++GT+n++ +   v V ++l
  KIR63347.1  14 DAGAAVVRAHYGSALGRIDKAG----GDFATTADIAAEAAIVDVLRAARPNDVVLGEEGGRRGR----EDNGRVWLVDPLCGTVNYAARNMLVSVNVAL 104
                 4566778888875555555444....9*************************************....******************************* PP

                 EETTEEEEEEEEETTTTEEECEETTTEEEETC....EEEEECTTS..EGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCH...EEE.BESSHHHHHH CS
  Inositol_P 113 lvegkpvlGviaqPllgqlysaakgkGaflng....eklplsrap..piseallvtlfavssrkdtseasllekvesavsae...gvr.svgssalkla 201
                     +  +++ a+P++++++++  g  a++ +    e          p+ ++ l   + v+ ++ +++++++ ++  +       ++r +v+s++l++a
  KIR63347.1 105 QTGTRTAVAASADPFTEEVFWTD-GDAAYVRSrggdE-------RlvPSAGSRL---VDVNLDPPFPNRDTFLAARMLADEGfieQFRpRVVSTTLAVA 192
                 ********************965.8889888833332.......3222333333...33455555555554444433333336666677999******* PP

                 HHHHTSTSEEEEEC.....EBHHHHHHHHHHHHHTTEEEEESSSCSSSTTSSEEEEESCHHHHHHHHHHHC CS
  Inositol_P 202 avaeGkadaylefg....rekkWDhAAGeaileeaGGvvtdakgegrlllargiiaanqkelaellaaave 268
                 +va+G+ +ay++ g    +++   +AAG+a++++aG+vvt ++g+++    +g+++a+  +++++l+a+v+
  KIR63347.1 193 WVAAGRRAAYVTDGhlrdSVH---FAAGIALCQAAGCVVTGIDGQPLHTGVGGLVVAADDRTHAALLALVR 260
                 **************5544444...8*********************************9999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1732.08
//
Query:       KIR63348.1  [L=187]
Description: deaminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-20   73.5   0.0    2.9e-20   73.0   0.0    1.2  1  RibD_C    RibD C-terminal domain


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   1.6e-24   2.9e-20       1     200 []       2     180 ..       2     180 .. 0.84

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 1.6e-24
                 -EEEEEEEEETTSBSSCTTSSGCT..SS-HHHHHHHHHHHHTSSEEEEEH...HHHHHHT--SS--SSCHSCHH.HTT.G...SS-EEEEEETTS.-S- CS
      RibD_C   1 pyvilklavSlDGklaaaggeskw..itgeearadvhelraeadailvGr...gtvladnpsltvrwvkkreae.adaea...rqpvrvVvdstl.rvp 89 
                 +++++ +  SlDG++aa+g++  w  +++e   ++  +     ++ l Gr   ++++  +p+   r   + +ae +   a   r++++vV++st  +v+
  KIR63348.1   2 RKLTFGMNLSLDGYIAAPGDDLGWsvPSDELF-QWWSDRVGATGTGLYGRrlwEMMSSHWPTADQRPGAT-PAEiEF--ArrwRDMPKVVFSSTIsTVD 96 
                 57889999****************63344444.4444444448889***************555555555.454344..2559*********9962578 PP

                 TTSHHHHSSS-EEEEESSCSCHHHHHHCCESE-HHHHHHHHHHTT--EEEEEETHHHHHHHHHTTT-SEEEEEEESCE--TTSBCSSSSST-SSEEEEE CS
      RibD_C  90 ldakvltddaptlvatteeadkekveklkvrvdlkelleeLkergirsllveGGatLagsllraglvDelrlyiaPkllGgagktlfdgegfkalklkl 188
                  +a+++t+d                         +++ ++L++++++sl +  ++tLa+  +ragl+De+ l+ +P+llGg gk++f   +   ++l+l
  KIR63348.1  97 WNARLFTGD------------------------AVTEIARLRAEDGGSLDIS-SPTLAAGAMRAGLIDEYTLVTHPVLLGG-GKPFFTTLDNW-VNLTL 168
                 8888***99........................9***************995.9***************************.********998.9**** PP

                 EEEEEETTEEEE CS
      RibD_C 189 vksealgegvvl 200
                 v+++++++gv+l
  KIR63348.1 169 VETRTFPDGVIL 180
                 ********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.54
# Mc/sec: 1048.99
//
Query:       KIR63349.1  [L=95]
Description: hypothetical protein TK50_21170 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.023   14.7   5.2      0.034   14.1   5.2    1.3  1  Anti-TRAP       Tryptophan RNA-binding attenuator protein inh


Domain annotation for each model (and alignments):
>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   5.2   1.9e-06     0.034      12      40 ..      67      94 ..      61      95 .] 0.94

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.9e-06
                E-TTTTTTSEETTE......E-TTTTTSS CS
   Anti-TRAP 12 kCdaCngsGkiepeeprasleCPkCsGkg 40
                 C  C gsG+  ++  +++l C +C+Gkg
  KIR63349.1 67 SCGYCGGSGRFHGA-SQGGLICTRCNGKG 94
                699***********.99***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 644.87
//
Query:       KIR63350.1  [L=206]
Description: hypothetical protein TK50_21175 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1496.07
//
Query:       KIR63351.1  [L=520]
Description: hypothetical protein TK50_21180 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.51
# Mc/sec: 3094.32
//
Query:       KIR63352.1  [L=309]
Description: DNA primase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-41  140.1   7.3    7.4e-40  136.9   4.4    2.1  2  Prim-Pol  Bifunctional DNA primase/polymerase, N-terminal


Domain annotation for each model (and alignments):
>> Prim-Pol  Bifunctional DNA primase/polymerase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.9   4.4   4.1e-44   7.4e-40       1     158 []      10     198 ..      10     198 .. 0.97
   2 !    4.2   0.0    0.0029        51      58     103 ..     215     252 ..     208     306 .. 0.72

  Alignments for each domain:
  == domain 1  score: 136.9 bits;  conditional E-value: 4.1e-44
    Prim-Pol   1 aleyaergwpvvPlppggKrPlg.....................kkwekdattdpeqirawwkkhpranvglatgpsglvvlDvDgke........... 67 
                 al++a+rgw+v+Pl+p +KrP+                       +we++attdp++ir+ w+++p  ++gla+gps+lvv+D+D ++           
  KIR63352.1  10 ALAHAARGWHVFPLRPDDKRPAFpnhaadrcdrtdprcraagrhLGWETRATTDPDRIRRAWSTRPY-GIGLACGPSRLVVVDLDVPKpgqippadhdl 107
                 7899****************************************9******************8876.******************************* PP

    Prim-Pol  68 ..agaealarLareeg.plPetvtvttgstgggrhlyfraPd.glalpnsagklapgldlrgeggyvvappsvhetgraYrwledpreiaelPew 158
                   +g++++a ++ ++g  +  t+tv+tg+   g hly r+P+ g +l+n+ag+l++ +d+r++ggyvva++s+   gr+Y+++ d +++a+lP+w
  KIR63352.1 108 cgNGVDVFATVCHQHGhRIETTYTVITGR--AGSHLYSRHPStGPTLRNTAGALGWLVDTRAHGGYVVAAGSTV-AGRPYTVALD-VDPAPLPDW 198
                 ****************88888********..**********97999****************************.9*******99.********9 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0029
    Prim-Pol  58 lvvlDvDgkeagaealarLareegplPetvtvttgstgggrhlyfr 103
                 +v+lDvD++  g+ + a+++r+ + l +      + +g++ h +f+
  KIR63352.1 215 TVALDVDRR--GRYVAAAIHRQVTHLTS------APEGRRNHALFT 252
                 679*****9..99999999998874433......333455666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2180.91
//
Query:       KIR63353.1  [L=79]
Description: hypothetical protein TK50_21190 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 538.10
//
Query:       KIR63354.1  [L=639]
Description: TraB protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.19   10.6   0.3       0.42    9.5   0.1    1.6  2  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-


Domain annotation for each model (and alignments):
>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   2.3e-05      0.42      16      50 ..     265     300 ..     260     304 .. 0.85
   2 ?   -3.9   0.0      0.27   4.9e+03     260     281 ..     376     397 ..     375     399 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 2.3e-05
  TrwB_AAD_bind  16 qhilivGttGsGKtqalekllrairargdra.ivlD 50 
                     h+  +G tGsGKt+ +   ++    r d a iv+D
     KIR63354.1 265 THVRATGMTGSGKTEWALVVMTDYLTRTDGAlIVVD 300
                    7999******************99999998725566 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 0.27
  TrwB_AAD_bind 260 elksllaegRkfGgavvlglqs 281
                    +l ++++++R+ G+ +vl  q 
     KIR63354.1 376 ALVQVAERARSAGISLVLSQQR 397
                    57788999**********9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 4038.69
//
Query:       KIR63355.1  [L=128]
Description: hypothetical protein TK50_21200 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 950.72
//
Query:       KIR63356.1  [L=154]
Description: hypothetical protein TK50_21205 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 1016.64
//
Query:       KIR63357.1  [L=284]
Description: hypothetical protein TK50_21210 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.039   13.5   0.1      0.093   12.3   0.1    1.6  1  DUF2737        Protein of unknown function (DUF2737)
      0.097   12.5   0.0       0.16   11.8   0.0    1.3  1  FtsK_gamma     Ftsk gamma domain
       0.12   12.3   0.0        5.6    6.9   0.0    2.4  2  ChpA-C         ChpA-C


Domain annotation for each model (and alignments):
>> DUF2737  Protein of unknown function (DUF2737)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.6e-05     0.093      10      47 ..      18      55 ..      13      60 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.6e-05
     DUF2737 10 iltvelkidrKikPmPsREELlkRNSFgSvNeNKYLNa 47
                 l++  k  +    +PsR  L+kR   gS   N  L +
  KIR63357.1 18 LLPAARKLAHELDALPSRNRLMKRFRIGSEKANELLTR 55
                6899999******************9999988887766 PP

>> FtsK_gamma  Ftsk gamma domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.7e-05      0.16       3      46 ..      15      59 ..      13      61 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.7e-05
  FtsK_gamma  3 eDelfeeavelvveegka.StSllQRrlriGYnRAarlidqLeee 46
                 Del+  a +l+ e +   S + l +r+riG  +A++l+ +L ee
  KIR63357.1 15 VDELLPAARKLAHELDALpSRNRLMKRFRIGSEKANELLTRLREE 59
                5999999999999988777**********************9987 PP

>> ChpA-C  ChpA-C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.022   1.3e+02      10      35 ..      64      89 ..      58      96 .. 0.83
   2 ?    6.9   0.0   0.00094       5.6      18      36 ..     183     201 ..     176     204 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.022
      ChpA-C 10 AeGaaagSpGvlSGNtvqvPvdvPVn 35
                A++ + + + vl G  ++ Pv vPV+
  KIR63357.1 64 ARSDSLHAAMVLRGSLADRPVLVPVD 89
                66677777789999***********7 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00094
      ChpA-C  18 pGvlSGNtvqvPvdvPVnv 36 
                 pG+ SG +++ ++ +P+ v
  KIR63357.1 183 PGIGSGWVIDTAITLPIGV 201
                 9***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1973.34
//
Query:       KIR63358.1  [L=83]
Description: hypothetical protein TK50_21220 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 770.12
//
Query:       KIR63359.1  [L=344]
Description: NAD-dependent epimerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-09   37.4   0.1    3.9e-08   33.0   0.1    2.5  1  Epimerase      NAD dependent epimerase/dehydratase family
     0.0023   17.1   0.0       0.65    9.0   0.0    2.2  2  RmlD_sub_bind  RmlD substrate binding domain
  ------ inclusion threshold ------
      0.048   13.6   0.3       0.14   12.1   0.1    1.9  2  SSI            Subtilisin inhibitor-like
       0.24   10.6   0.0       0.34   10.1   0.0    1.1  1  UPF0052        Uncharacterised protein family UPF0052


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.1   8.7e-12   3.9e-08       2     240 ..       4     224 ..       3     225 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 8.7e-12
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnlle 100
                 lV+G+t f+G  +v a l++g++v +++r +s+      + ++ +++d t+++++++l +    dav+     g v+++  d a++++  ++g +  ++
  KIR63359.1   4 LVLGGTWFVGHTIVTAALDAGWDVATFNRGTSGPDV---DGVRAIRGDRTQPADVDALAAAGSWDAVVDT--SGYVPRNTLDVARTLD-PVAGRYVFMS 96 
                 9*****************************777764...34589****************99********..9999999999888887.5666665555 PP

                 HHHHH...TCTEEEEEEEGGGGTSCSSSS.BSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHHT CS
   Epimerase 101 aarka...gvkrllflsSsevYGkdaeqp.keettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirkile 195
                  ++ +    v + l   S  +Y +++  p    +t++gp+     Y+++K   e  + a+      ++++lr+  + Gpr    e  + +p ++r++++
  KIR63359.1  97 TVSVYrdwPV-KPLSEESEMLYCPPDAGPdYGTDTEDGPT----QYGYQKSGCEAAALAAFGPD--RTTVLRPGVVLGPR----EYIGRLPWWLRRVAA 184
                 5554422255.88888899999887777867777766766....9*****99999988776655..89************....99999********** PP

                 TSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEE CS
   Epimerase 196 gkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyni 240
                 g   v+  g+ +   + ++v+D+a  +l+ +++       +++n+
  KIR63359.1 185 GG-TVLAPGSPDRSIQPVDVRDLAAFVLRTAAE----GISGAFNV 224
                 **.88888888888899********99998887....33456665 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00015      0.65       1      61 [.       1      73 [.       1      82 [. 0.94
   2 !    5.8   0.0    0.0014       6.3     113     201 ..     126     218 ..     119     229 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00015
                   EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT............T--TTSHHHHHHHHHHH--SEEEE---- CS
  RmlD_sub_bind  1 mkilvtGanGqlGseLakqlaeeglevlaltre............eldltdaeavaellkeakpdvvvnaAAy 61
                   m++lv+G++  +G  ++ ++  +g++v +++r             + d t+++ v++l ++ + d+vv++  y
     KIR63359.1  1 MRLLVLGGTWFVGHTIVTAALDAGWDVATFNRGtsgpdvdgvraiRGDRTQPADVDALAAAGSWDAVVDTSGY 73
                   89****************************999999*999999999999999999999999999999998877 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0014
                    B-TTS----SSHHHHHHHHHHHHHHHH-S..SEEEEEE-SEESS..SSS-HHHHHHHHHHH-SEEEE.ESS-EE--EEHHHHHHHHHHHHHHCH CS
  RmlD_sub_bind 113 YeeddetsPlnvYGrtKlaGEqavlaagk..kalivRtswvyge..kgknfvktmlrlakereelkv.vaDqlgsPTsardlAevllqllekaa 201
                    Y +d e +P + YG  K   E a laa    +++++R ++v+g   +   +   + r a+    l     D+  +P  +rdlA+++l  +++ +
     KIR63359.1 126 YGTDTEDGP-TQYGYQKSGCEAAALAAFGpdRTTVLRPGVVLGPreYIGRLPWWLRRVAAGGTVLAPgSPDRSIQPVDVRDLAAFVLRTAAEGI 218
                    777777777.579********999996533499*********9743455666666666666666654267****************99988766 PP

>> SSI  Subtilisin inhibitor-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.5   6.5e+03      21      35 ..     111     125 ..     106     130 .. 0.74
   2 ?   12.1   0.1   3.1e-05      0.14      27      85 ..     224     285 ..     212     297 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.5
         SSI  21 eravtLsCePtagGt 35 
                 e++ +L C P ag +
  KIR63359.1 111 EESEMLYCPPDAGPD 125
                 5677899*9976655 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.1e-05
         SSI  27 sCePtagGthpaaaaACaeLkaveGdfealaae.kealCtkeyd..pvtvtaeGvWeGkrvs 85 
                  C+Pt g t+ +  aACa+ + +  +fe ++++       ++++  p+  t eGvW+   v+
  KIR63359.1 224 VCAPTDGATFGELLAACADATGAAPRFEWVPDDvLLDQGVRQWSelPLWRTFEGVWRVDAVR 285
                 6*******************************98667788888744788899****988776 PP

>> UPF0052  Uncharacterised protein family UPF0052
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   7.6e-05      0.34     180     256 ..     188     262 ..     182     294 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.6e-05
                 EE-SS-IIIIIHHHHTSCCHHHHH.HH-SSEEEEE--SB--TTTSTT-BHHHHHHHHHHCH-.SS....S-SEEEEE-S CS
     UPF0052 180 vlgpGslytSiiPiLlvpgiaeal.reskakkvlvsnimtqkGetdgfsvsdhvkaieravg.kgvakayvdavlvnts 256
                 vl+pGs+  Si P+  v+++a+ + r++   + +  n+      tdg+++ ++++a+ +a g +   + + d+vl++++
  KIR63359.1 188 VLAPGSPDRSIQPV-DVRDLAAFVlRTAAEGISGAFNVCA---PTDGATFGELLAACADATGaAPRFEWVPDDVLLDQG 262
                 89***********7.6777777774666666778999996...*******************645567789****9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2339.93
//
Query:       KIR63360.1  [L=102]
Description: hypothetical protein TK50_21240 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 734.57
//
Query:       KIR63361.1  [L=495]
Description: integrase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-20   72.8   0.1    7.2e-19   68.2   0.0    2.2  2  Phage_integrase  Phage integrase family
    1.5e-14   53.4   0.6    3.6e-14   52.2   0.2    1.9  2  GntR             Bacterial regulatory proteins, gntR family
    1.9e-05   24.8   0.0    3.3e-05   24.1   0.0    1.4  1  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
    0.00029   20.4   0.0    0.00055   19.6   0.0    1.4  1  HTH_41           Helix-turn-helix domain
  ------ inclusion threshold ------
      0.019   14.9   0.2      0.019   14.9   0.2    3.6  5  MarR_2           MarR family
      0.022   14.3   0.0       0.12   11.9   0.0    2.3  2  HTH_24           Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.045   1.3e+02      88     125 ..      53      92 ..      33     108 .. 0.72
   2 !   68.2   0.0   2.4e-22   7.2e-19      26     167 ..     233     395 ..     221     400 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.045
                      CHCCTTTSBSSBET..TSSB--HHHHHHHHHHHHHHCT-S CS
  Phage_integrase  88 leeaeksellfask..rgkplsrqtvrkafkraveeagie 125
                      +e+++ ++ l+a+   r++p +r t+++ + r+ e a+ie
       KIR63361.1  53 KEAEKARTRLLAQVdeRRNPRTRATLDQLLDRWLEVADIE 92 
                      3444445555555577*********************999 PP

  == domain 2  score: 68.2 bits;  conditional E-value: 2.4e-22
                      HHHHHHHHT--HHHHTT-BGGGEECTTTEEEEE............EEECSSSSEEEEECTHHHHHHHHHHHHHH.......CHCCTTTSBSSBE CS
  Phage_integrase  26 llellyetGlRisEllsLrvkdldlengvilvh............eregKgskeravplseealellkellska.......leeaeksellfas 100
                      l+ l++ tG+R +El++Lr+ +ldl+ gv+++             e+ +K+ ++r v+l  e + +l el ++          + ++ +++f  
       KIR63361.1 233 LVWLAMTTGARRGELAALRWHHLDLAAGVLTLRrsayldadgalqEKDTKTHQQRRVALDPETVAVLAELHARYvdrlaqlDATTDPADYVFSP 326
                      677999******************************************************77777777776666666788777889999***99 PP

                      T..TSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHH..HHHH CS
  Phage_integrase 101 k..rgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssistt..qiYt 167
                      +  + +     t+ +++ r++++ gi+   + H lRh+ at+L++agvd+r+v+  lGH    tt  ++Y+
       KIR63361.1 327 EpdNSRGYRPDTITQRYGRLAKRLGID--SHIHALRHYSATELINAGVDVRTVAGRLGHGGGGTTtlRVYA 395
                      9754445566899**************..999***************************988777577776 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         2     6e+03      44      57 ..     181     194 ..     178     195 .. 0.84
   2 !   52.2   0.2   1.2e-17   3.6e-14       2      64 .]     427     489 ..     426     489 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2
                 HHHHHHHTTSEEEE CS
        GntR  44 ALrrLeaeglverr 57 
                 AL+r +++ ++ ++
  KIR63361.1 181 ALSRAVRWRWIAVN 194
                 99******999875 PP

  == domain 2  score: 52.2 bits;  conditional E-value: 1.2e-17
                 HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR   2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64 
                 y+ ++e+Lre+I++g+l+pGd+LP++ +La+  gVs  t  +A   L+a+gl+ + +gr ++V
  KIR63361.1 427 YRVIAEELREQIRAGRLKPGDPLPTVLDLATTHGVSVGTAHRAVASLTADGLINVARGRRATV 489
                 889*******************************************************98876 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.1e-08   3.3e-05       1      57 [.      77     131 ..      77     132 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.1e-08
                      ..HHHHHHHHHHHHHHH-HHHHHHHHHHHTTTHHHHTTSSBGGG--HHHHHHHHHHH CS
  Phage_int_SAM_3   1 tFsefleeWleeykprvkesTyatyksiiknhIlPyFgniklkkItpadiqkfqnel 57 
                      t+ ++l+ Wle+   ++  +T+  y++ +++h+ P +g++++  + + ++  f+ +l
       KIR63361.1  77 TLDQLLDRWLEV--ADIEATTRMGYENKLNKHVRPTLGKLPVGRLDAETLESFYASL 131
                      78899*******..89*********************************99999876 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.8e-07   0.00055       2      43 ..     445     485 ..     444     488 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.8e-07
      HTH_41   2 vGdRlktIeelakeleLSvGlvQkALklLeddkaislerrGr 43 
                  Gd l+t+ +la   ++SvG+   A+ +L +d+ i++ r Gr
  KIR63361.1 445 PGDPLPTVLDLATTHGVSVGTAHRAVASLTADGLINVAR-GR 485
                 699*********************************964.55 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       2.8   8.2e+03      20      30 ..      72      84 ..      59      96 .. 0.52
   2 ?   -2.1   0.0       1.2   3.7e+03       2      17 ..     290     305 ..     289     312 .. 0.83
   3 ?   -1.2   0.0      0.63   1.9e+03      25      35 ..     344     354 ..     330     355 .. 0.79
   4 ?   -3.3   0.0       2.9   8.6e+03      13      31 ..     397     413 ..     382     417 .. 0.78
   5 ?   14.9   0.2   6.2e-06     0.019      18      56 ..     447     484 ..     438     488 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.8
                S..EEEHHHHHHH CS
      MarR_2 20 r..dltvgelarr 30
                +  + t  +l +r
  KIR63361.1 72 PrtRATLDQLLDR 84
                2343344444333 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                 T--HHHHHHHHHHHCT CS
      MarR_2   2 gltpaqarvLaaLgrr 17 
                 +l+p    vLa+L++r
  KIR63361.1 290 ALDPETVAVLAELHAR 305
                 5788889999999875 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.63
                 HHHHHHHTSSH CS
      MarR_2  25 gelarrlglsk 35 
                 g la+rlg++ 
  KIR63361.1 344 GRLAKRLGIDS 354
                 67999999986 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 2.9
                 HHHCTTTSEEEHHHHHHHH CS
      MarR_2  13 aLgrrpgrdltvgelarrl 31 
                 +L  ++    ++g la+r+
  KIR63361.1 397 WLSESDQ--RAAGTLAARM 413
                 4666776..4888899886 PP

  == domain 5  score: 14.9 bits;  conditional E-value: 6.2e-06
                 TTSEE.EHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2  18 pgrdl.tvgelarrlglsksavsrilkrLvaaGLverrpg 56 
                 ++  l tv +la + g+s ++++r+++ L a GL+   +g
  KIR63361.1 447 DP--LpTVLDLATTHGVSVGTAHRAVASLTADGLINVARG 484
                 44..569****************************87766 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.78   2.3e+03      22      30 ..     345     353 ..     343     354 .. 0.83
   2 ?   11.9   0.0     4e-05      0.12      19      47 ..     451     479 ..     446     480 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.78
      HTH_24  22 eLAerlglS 30 
                  LA+rlg+ 
  KIR63361.1 345 RLAKRLGID 353
                 59*****95 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4e-05
      HTH_24  19 sqreLAerlglSpstvnrrlkrLeeeGlI 47 
                 +  +LA   g+S++t +r +  L+ +GlI
  KIR63361.1 451 TVLDLATTHGVSVGTAHRAVASLTADGLI 479
                 678999999*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3469.65
//
Query:       KIR63362.1  [L=346]
Description: lysophospholipase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-22   80.6   0.1    5.2e-22   78.3   0.1    1.9  1  Hydrolase_4    Serine aminopeptidase, S33
    2.9e-08   34.6  18.8    2.9e-08   34.6  18.8    1.4  1  Abhydrolase_6  Alpha/beta hydrolase family
    3.1e-06   27.0   0.2    4.5e-06   26.5   0.2    1.2  1  Abhydrolase_1  alpha/beta hydrolase fold
     0.0015   18.3   0.0      0.014   15.2   0.0    2.0  2  Abhydrolase_5  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.066   12.9   0.0        0.1   12.2   0.0    1.2  1  PUA_2          PUA-like domain
       0.14   11.2   0.0       0.18   10.8   0.0    1.1  1  DUF1749        Protein of unknown function (DUF1749)


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.1   1.7e-25   5.2e-22       3     201 ..      38     244 ..      36     294 .. 0.79

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 1.7e-25
  Hydrolase_4   3 pkavvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse...gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllry 97 
                   + +v+ vHG+ ++  +  ++a+ +a++G+++yalD r +Grs         ++++ dy   l+a+ + v+++ ++  l ++GhS+GGl+  l+++ +
   KIR63362.1  38 TRRAVLYVHGYVDYFFQ-THVADFFAERGWDFYALDLRKYGRSLlahQTPNFCRDLGDYFPELDAAAKIVRTDDGHDTLLVMGHSTGGLVISLWAHAR 134
                  7899*********9855.68***********************9988777899******************************************555 PP

  Hydrolase_4  98 pd..kvaglilsaPalkikaklkappllklllkllgkllpklqv.....snnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrleeraa 188
                  +d   v+gl+l +P+++i+a++ +++ l+++   lg+ +p+ ++     +   ++    +  e    ++ +pl ++ +++++l+ +  ++ +l++   
   KIR63362.1 135 RDagIVDGLVLNSPFFDINAPWVVRRPLAAAVSRLGRSAPRRRLpfglgTVYGESLHAEHRGEWTYDLAWKPLAGFPVRAGWLNAVRAGQRQLRAGL- 231
                  5544677**************99999999999************99998666667777777777888999************988766666666655. PP

  Hydrolase_4 189 kitlPllllhGea 201
                  +i +P+ll ++++
   KIR63362.1 232 DIPVPVLLACSTR 244
                  599**99987764 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6  18.8   9.6e-12   2.9e-08       1     198 [.      42     267 ..      42     299 .. 0.55

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 9.6e-12
                    EEEE--GC.....GCHHHHHHHHCCT...CEEEEE--TTSTS-GGCS--HHHCHHHHHHHCCTT..........TTSE.EEEEETCHHHHHHHHHH CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaag...vhvlapDlpGhGrsdpppldledladlaalldelaa........gggpv.vlvGHSlGGalalaaap 84 
                    vl +HG     +  +++++a ++a++   +  +a+Dl+ +Grs  ++ + +  +dl ++  el+a        +g++   ++GHS GG++ +++a+
     KIR63362.1  42 VLYVHGYV--DYF-FQTHVADFFAERgwdF--YALDLRKYGRSLLAHQTPNFCRDLGDYFPELDAaakivrtdDGHDTlLVMGHSTGGLVISLWAH 132
                    6789**33..222.3778888888888668..*********99777766655444433333333333333366566666**************888 PP

                    CC......EEEEES-..----TTT....S----TTHHHHHHTT-C..CCCHCCHS-HSCCCCHHHCCCCHCHCCCGHH....HHCCHHC......H CS
  Abhydrolase_6  85 la....lvvgvlldppptalpagl....laaalelllallallrl..lawlsreplprlfladedadaawrarlarla....allaglg......l 160
                    +     +v g++l++p  ++++      ++++++ + +l++++++  l +  +  ++++++a+     +w++ la  +    + +ag+       +
     KIR63362.1 133 ARrdagIVDGLVLNSP--FFDINApwvvRRPLAAAVSRLGRSAPRrrLPFGLGTVYGESLHAEHR--GEWTYDLAWKPlagfPVRAGWLnavragQ 224
                    8866666666555553..44444433555555555555555444422333333378889999777..44444443333334422222222322233 PP

                    TTCCHHTT-TTGCEEECTT-C.......HHHHCHHCCCHSTTEEE CS
  Abhydrolase_6 161 lpaaawadlpvpllvlggeDp.......lvprllerllaqagarl 198
                    + ++a  d+pvp+l+ +++ +       +  + l+++   +++++
     KIR63362.1 225 RQLRAGLDIPVPVLL-ACSTRtfrgtkwHDSAALADAVL-DVEHM 267
                    346699999999966.66666444443322222222222.33333 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.2   1.5e-09   4.5e-06       2     107 ..      41     150 ..      40     164 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.5e-09
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.......CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin......ddygtasvaddldrildalgddkltlvGhSmGGmialaya 91 
                    +++++hG+ +   ++++  +a+ +a++g+d+++lDlr +g+S  a+ ++n      d ++   + +  + ++   g d l ++GhS GG++ + +a
     KIR63362.1  41 AVLYVHGYVD---YFFQTHVADFFAERGWDFYALDLRKYGRSLLAHQTPNfcrdlgDYFPE--LDAAAKIVRTDDGHDTLLVMGHSTGGLVISLWA 131
                    5788888877...55666699999***********************99999777555555..666666779999********************* PP

                    HHH..GGGEEEEEEESE.C CS
  Abhydrolase_1  92 aey..perVkalvllga.i 107
                            V++lvl ++  
     KIR63362.1 132 HARrdAGIVDGLVLNSPfF 150
                    9998888999999999953 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.5e-06     0.014      44      86 ..     100     145 ..      96     152 .. 0.83
   2 ?    0.4   0.0      0.17     5e+02     109     140 ..     257     288 ..     252     290 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.5e-06
  Abhydrolase_5  44 nkaeeiikeapklekfvvgGhslGGvvasrfaa..ee.ekiegvvf 86 
                    ++a++i++  ++ + ++v Ghs GG v+s +a+  ++ + ++g+v+
     KIR63362.1 100 DAAAKIVRTDDGHDTLLVMGHSTGGLVISLWAHarRDaGIVDGLVL 145
                    7899*************************99985433247888876 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.17
  Abhydrolase_5 109 teDgvlnvkslekakkflpkdtkvvsieGgnh 140
                      D+vl+v+++ + + +l ++ ++   +Gg h
     KIR63362.1 257 LADAVLDVEHMVRWAPRLGRHVTLARFDGGMH 288
                    579***************************99 PP

>> PUA_2  PUA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.5e-05       0.1      50     103 ..     205     260 ..     203     274 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.5e-05
                 TT-SCC--HHHHHHHHH..HSEETTS-E-SS---EEEECCHCHHHTT-SEEEEEET CS
       PUA_2  50 sPLegFmreedyesvle..emrLadgllwsiPivLdvseedakklkegdrvaLkdk 103
                  PL gF  ++ +++ +   +++L  gl  ++P++L++s  + +  k  d+ aL d+
  KIR63362.1 205 KPLAGFPVRAGWLNAVRagQRQLRAGLDIPVPVLLACSTRTFRGTKWHDSAALADA 260
                 7*************9973357899**************************999987 PP

>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.2e-05      0.18      86     148 ..      98     154 ..      31     166 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.2e-05
     DUF1749  86 eieklveYlkktksGeekkekvvlmGHstGsqdvlyYltssnerdrekvdgailqapvsDRea 148
                 e++++ + ++++     +++ +++mGHstG   +   l  + +rd+  vdg +l +p  D +a
  KIR63362.1  98 ELDAAAKIVRTD----DGHDTLLVMGHSTGGLVIS--LWAHARRDAGIVDGLVLNSPFFDINA 154
                 666777777777....468899********86444..44444568999****99999888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2640.24
//
Query:       KIR63363.1  [L=148]
Description: sigma 54 modulation protein/ribosomal protein S30EA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-06   28.1   0.1    3.4e-06   27.7   0.1    1.1  1  Ribosomal_S30AE  Sigma 54 modulation protein / S30EA ribosoma
  ------ inclusion threshold ------
      0.075   12.5   0.3       0.14   11.7   0.3    1.4  1  TGF_beta_GS      Transforming growth factor beta type I GS-mo


Domain annotation for each model (and alignments):
>> Ribosomal_S30AE  Sigma 54 modulation protein / S30EA ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1   3.8e-10   3.4e-06      15      85 ..      25     106 ..      20     107 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 3.8e-10
                      HHHHHHHHCCGG.GG.......-EEEEEEE......EEEEEEEEEEEC.TTEEEEEEEEESSHHHHHHHHHHHHHHHHHHCHHTT CS
  Ribosomal_S30AE  15 keyvekklekle.ky..f....ieadVtls......kkkkvevtirla.kgkviraeeesedlyaaidlavdklerqlrkykekl 85 
                      ++ + ++++ l+ ++  f    +e++V ++      +  kv ++  +a ++k+++ ++ +edl+aa++++ d l+r+l   k+++
       KIR63363.1  25 RNWIAEQFATLDaRLagFhadaTELEVSVKdreargQ--KVTLECWIAgRQKIVT-TSAEEDLHAALNDVRDDLRRRLNDAKTRQ 106
                      78899999999975555256779*******8665443..4555555552455555.44569**********************97 PP

>> TGF_beta_GS  Transforming growth factor beta type I GS-motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   1.5e-05      0.14       9      19 ..     130     141 ..     127     141 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.5e-05
  TGF_beta_GS   9 sst.SGSGSGlP 19 
                  ++t +GSGSG P
   KIR63363.1 130 DDTdTGSGSGAP 141
                  4566******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1083.76
//
Query:       KIR63364.1  [L=514]
Description: cobalamin biosynthesis protein CobQ [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-47  161.1   0.0    3.1e-47  160.7   0.0    1.1  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
    3.7e-20   72.3   0.0    6.4e-20   71.5   0.0    1.3  1  CbiA           CobQ/CobB/MinD/ParA nucleotide binding domain
    3.1e-16   59.8   0.0    1.4e-15   57.6   0.0    2.0  1  AAA_26         AAA domain
    0.00025   21.0   0.0    0.00041   20.3   0.0    1.3  1  SNO            SNO glutamine amidotransferase family
     0.0014   18.5   0.0     0.0028   17.4   0.0    1.5  1  GATase         Glutamine amidotransferase class-I
     0.0017   18.1   0.0     0.0058   16.4   0.1    1.8  2  DJ-1_PfpI      DJ-1/PfpI family
  ------ inclusion threshold ------
      0.029   14.1   0.0      0.043   13.6   0.0    1.4  1  Peptidase_C26  Peptidase C26


Domain annotation for each model (and alignments):
>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.7   0.0   1.2e-50   3.1e-47       1     195 [.     261     443 ..     261     444 .. 0.91

  Alignments for each domain:
  == domain 1  score: 160.7 bits;  conditional E-value: 1.2e-50
    GATase_3   1 kiavirlpaisnytdldpLeaepevrvrfvplkdeslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeeiedpegve 99 
                 ++av+rlp+isn td+++L+ ep vrvr    +  +l++ adlv+lpG+k+t++dl +lre+gl++a++++a+ag+p+lgiCGG+qmLG+ ++d+  ve
  KIR63364.1 261 DVAVVRLPRISNATDVEALATEPGVRVRLTV-EPAELAA-ADLVVLPGSKSTVADLTWLRETGLADAVAAHAAAGKPLLGICGGFQMLGRAVHDE--VE 355
                 59**************************999.9999976.*****************************************************96..69 PP

    GATase_3 100 geageveglglLdietefekekltgqvegevelaaegeevkGyEiHsGrtilkekak.pllkvkvggnngekdGavkksedgnvlGtYlHglfdnrn 195
                 ++ag+v glglL++e++f+ +k+++q  g+  +a  g +v+GyEiH+G+++++++   pll++     +g+ +Gav +     v Gt  Hg f++++
  KIR63364.1 356 SRAGSVAGLGLLPVEVTFAARKTVRQAAGT-AAADPGVPVRGYEIHHGHVSSADPGLpPLLAY----ADGTGEGAVRG----AVCGTHWHGAFESDA 443
                 9****************************9.445678***********888777665055555....33388999966....************987 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   2.5e-23   6.4e-20       1     118 [.       5     234 ..       5     241 .. 0.95

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 2.5e-23
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH.....HTTEB-HHHH........................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxx........................................ RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlai.....leglendiep........................................ 54 
                 +++a+t++++GK++l+a+++r l rrg +V++++a++++nn+a+       g e+ +++                                        
  KIR63364.1   5 LLVAGTTSDAGKSVLTAGICRWLHRRGVKVAPFKAQNMSNNSAVvvgpdGRGGEIGRAQamqaaacgiapdlrfnpvllkpgsdrssqvvllgeavdtv 103
                 589****************************************98886666666666669*************************************** PP

                 .................................................................CCHCCCHHHHHHCHCHHHH.......EEEEEEEE CS
                 .................................................................xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxx RF
        CbiA  55 .................................................................dlkrllellealgkkkall.....lkiagvvlnr 83 
                                                                                  d++r +++++++ +++all      ++ag+v+n+
  KIR63364.1 104 tagnyhalrprlaeaafaalaelreayevvvcegagspaeinlragdyvnmglarhaglptivvgDIDR-GGVFASMFGTVALLdpadqALVAGFVINK 201
                 *********************************************************************.888888888889889************** PP

                 ESS...-TTCHHHHHHHHHHCTS-EEEEEE--CCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  84 vdgeneetllkealeelkqrygvpvlgviprdeav 118
                 ++g+    ll+ +l+ l q +g+p +gv+p+  ++
  KIR63364.1 202 FRGD--LGLLRPGLDMLAQVTGRPTYGVLPWHLDL 234
                 ****..9***********999*********98776 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   5.7e-19   1.4e-15       3     194 ..       5     234 ..       3     235 .. 0.80

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 5.7e-19
      AAA_26   3 ifvtgtdtgvGKTvvslgLvralkrkgvkvgyfKPiqtgie............ededselike.llgldqtyelpeplalsaplspelaarqegedid. 87 
                 ++v+gt+ ++GK+v+++g++r l+r+gvkv+ fK  +  ++            e ++++ ++  ++g+  +    +p++l+    ++ +  + ge++d 
  KIR63364.1   5 LLVAGTTSDAGKSVLTAGICRWLHRRGVKVAPFKAQNMSNNsavvvgpdgrggEIGRAQAMQAaACGIAPDLR-FNPVLLKPGSDRSSQVVLLGEAVDt 102
                 89********************************876666667888888755444466666653555555555.6788888666555555555666653 PP

      AAA_26  88 lekiv...................kelekdadivvVEGagglgvpitee..llnadiaknlgapvilVarggl.gtinqllltiealrq.knvrvlGvi 163
                 +                        el++++++vv+EGag+  +  ++    +n  +a++ g+p+i+V+ +++ g ++ +  t+++l    +  v+G +
  KIR63364.1 103 V---TagnyhalrprlaeaafaalAELREAYEVVVCEGAGSPAEINLRAgdYVNMGLARHAGLPTIVVGDIDRgGVFASMFGTVALLDPaDQALVAGFV 198
                 2...1334669999999999*********************99775554479*******************994589**********9615667***** PP

      AAA_26 164 lNkvrnp.....envetlekksgipvlGvvPylpdl 194
                 +Nk+r +       +++l + +g p +Gv+P+  dl
  KIR63364.1 199 INKFRGDlgllrPGLDMLAQVTGRPTYGVLPWHLDL 234
                 *******7666549******************8776 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.6e-07   0.00041      27     102 ..     292     373 ..     271     387 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.6e-07
                 SGGGGCC-SEEEE-SS-HHHHHHH.HHHTT-HHHHHHHHHTT.--EEEETHHHHHHCCEETTB......SS-SS--CCEEEET CS
         SNO  27 rkedlaevdaliiPGGestamskl.iertglyedllefvknsekvvlGtCaGlillskelene......lvktlellkvkvkr 102
                 ++ +la  d +++PG  st   +  + +tgl +++ + ++ + k++lG C G+ +l + ++ e       v  l+ll v+v  
  KIR63364.1 292 EPAELAAADLVVLPGSKSTVADLTwLRETGLADAVAAHAAAG-KPLLGICGGFQMLGRAVHDEvesragSVAGLGLLPVEVTF 373
                 5789***************9886527889******9999999.**************99988776777788899999999864 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.1e-06    0.0028      40      96 ..     296     358 ..     270     405 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.1e-06
                 HHSTSEEEEEEESSCTT......TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEE CS
      GATase  40 lknpdgilvsgGpgspg......vegkieaikearenkiPiLGICLGmQllaiefgrkvvkek 96 
                 l  +d ++++g   +++       +g  +a+   + +++P+LGIC G+Q+l+ ++  +v+++ 
  KIR63364.1 296 LAAADLVVLPGSKSTVAdltwlrETGLADAVAAHAAAGKPLLGICGGFQMLGRAVHDEVESRA 358
                 4556666666666666688888744555555555556****************9999888544 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   2.3e-06    0.0058      39     110 ..     278     349 ..     260     360 .. 0.80
   2 ?   -2.2   0.0       1.2   3.1e+03      41      65 ..     456     480 ..     450     480 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.3e-06
                 EEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHH..TSHHHHHHHHHHHHTT-EEEEETTTHHHHHHT CS
   DJ-1_PfpI  39 evkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlr..enekvvelvkefaekgklvaaICagpqlLaaa 110
                    +  G++v++++     + a+ D++vlpG ++   +l   +++ + + v  +a +gk++  IC g q+L +a
  KIR63364.1 278 ALATEPGVRVRLTVEPA--ELAAADLVVLPGSKSTVADLTwlRETGLADAVAAHAAAGKPLLGICGGFQMLGRA 349
                 55677788888877555..56777********99877764224569***********************99875 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.2
                 EETTSEEEE-SEEGGGCTCCG-SEE CS
   DJ-1_PfpI  41 kgsrGlkvtvdaslddvkaaeyDal 65 
                  g  G++v +d+s+  ++  + D+l
  KIR63364.1 456 AGRTGFRVAPDTSFAAARERSLDLL 480
                 67789*********98888888865 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.7e-05     0.043      98     132 ..     326     356 ..     300     436 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.7e-05
  Peptidase_C26  98 iraalergvPilgiCrGlqllnvalGGtlyqdiee 132
                    ++a  ++g+P+lgiC G+q+l    G  ++ ++e+
     KIR63364.1 326 VAAHAAAGKPLLGICGGFQML----GRAVHDEVES 356
                    6778899*************9....4445555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3649.71
//
Query:       KIR63365.1  [L=353]
Description: hypothetical protein TK50_21280 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.4   1.4      0.014   15.4   1.4    2.7  3  DUF4235   Protein of unknown function (DUF4235)


Domain annotation for each model (and alignments):
>> DUF4235  Protein of unknown function (DUF4235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2      0.12   2.2e+03      18      27 ..      30      39 ..      25      44 .. 0.58
   2 ?   15.4   1.4     8e-07     0.014       7      41 ..      90     125 ..      84     159 .. 0.68
   3 ?   -3.3   0.2      0.56     1e+04       9      17 ..     235     243 ..     234     245 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.12
     DUF4235 18 kafaavWkkv 27
                +a+a vW+++
  KIR63365.1 30 RAVARVWQAA 39
                3455555544 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 8e-07
     DUF4235   7 vl.glvaGavagkafaavWkkvtgeda.Pkdpkdedv 41 
                 ++ gl+a++++   f+ +W++v+g+da P dp+d+ +
  KIR63365.1  90 AAdGLAAALAGAHRFRSGWQRVRGDDAlP-DPDDPAT 125
                 44267777777789***********8867.8885433 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.56
     DUF4235   9 glvaGavag 17 
                 +l+aGa+ag
  KIR63365.1 235 TLLAGALAG 243
                 578888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2526.33
//
Query:       KIR63366.1  [L=455]
Description: hypothetical protein TK50_21295 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-35  120.8   0.9    1.6e-34  119.4   0.5    1.7  2  Peptidase_M20  Peptidase family M20/M25/M40
    1.1e-18   67.1   0.0    1.9e-18   66.4   0.0    1.4  1  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.12   1.1e+03     117     160 ..      24      70 ..       3      80 .. 0.72
   2 !  119.4   0.5   1.8e-38   1.6e-34       1     205 [.      88     444 ..      88     446 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.12
                    EEEEEEEEESHEEEC..CHHHHHHHHHHHHHHH.TSC..EEEEEESSSB CS
                    xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx.xxx..xxxxxxxxxx RF
  Peptidase_M20 117 vevelleggapvtln..dsplvkalaeaaeelf.gek..velivsgpgg 160
                    +++e+l + +  +++  d+  v+  aea+ el+ g +  v+  v + gg
     KIR63366.1  24 ADLERLVRIPGIAFDgfDHSHVERSAEAVAELLrGCDldVRI-VRS-GG 70 
                    678888899999999999999999999999988875531333.333.44 PP

  == domain 2  score: 119.4 bits;  conditional E-value: 1.8e-38
                    EEEEES-BSSTTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHHTTTCESEEE CS
                    xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegleerekvdavf 95 
                    ll++H Dv+p ++ + w++ pf++ e+dG+lyGrGa+d+k+g++a+++alra+ d+    +  +v+ ++++EE g+++ + ll++  +r+++    
     KIR63366.1  88 LLYAHHDVQPVGDLSLWESdPFEPVERDGRLYGRGAADDKAGIMAHVAALRAFGDRL---PVGVVIFVEGEEEYGSDSLERLLAE--HRDALASD- 177
                    79********99999****************************************98...99***********555666666662..33344443. PP

                    EEEEESSSBTCHSTETEEEE............................................................................ CS
                    xxxxxxxxxxxxxxxxxxxx............................................................................ RF
  Peptidase_M20  96 elhieepgileagklaigvv............................................................................ 115
                     ++i ++ +++ g  a   +                                                                            
     KIR63366.1 178 VIVIADSANWDVGVPAL--Ttslrgivncfvevrtldhavhsgmfggavpdalttlvrllatlhddagdvavaglsaregatvdypqdrfraeagl 271
                    3779*******777444..35699************************************************************************ PP

                    ............................................................................EEEEEEEEEESHEEEC.CHH CS
                    ............................................................................xxxxxxxxxxxxxxxx.xxx RF
  Peptidase_M20 116 ............................................................................kvevelleggapvtln.dsp 134
                                                                                                +v v+l+++gap +++ ++p
     KIR63366.1 272 vdgvsligtgritdriwtkpalavlgidapatgeapnalvpaakaklsvrlapgddpqrayaavrehltkhapwgaRVAVTLEHDGAPCVIDaSGP 367
                    ***************************************************************************87999988************* PP

                    HHHHHHHHHHHHH.TSCEEEEEESSSBHTHHHH...TTT.EEEEE..EESSG..GCTTSTTTEEEHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx...xxx.xxxxx..xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 135 lvkalaeaaeelf.gekvelivsgpggtdarff...agi.ptvmi..fgpgs..glaHspnEyvdledlekgikvlarll 205
                    +++a+++a + ++ g  +e++  g +g  ++f+   +++ p++ i   g ++  ++aH+pnE ++l ++++ +++ a ll
     KIR63366.1 368 MFDAARDAFRTAWdG--TEPVDIG-IGGSIPFIatfQEMfPQAAIlvTGVEDphARAHGPNESLHLGEFARVCAAEALLL 444
                    *************99..5555667.77777777667777885533135655568*************9999888776665 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   2.1e-22   1.9e-18       2     108 ..     197     346 ..     196     347 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 2.1e-22
                 EB-EEEEEEEE..EE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC..........................................TCCTCCCCC CS
   M20_dimer   2 ghkGlaggkit..vkgkagHsg.apgagaNAieklarllaeledeegdia.....................................eerslprttlnv 60 
                 +++G++ + ++  + ++a+Hsg ++ga+++A++ l+rlla l+d+ gd+a                                     ++r++ +++l+v
  KIR63366.1 197 SLRGIVNCFVEvrTLDHAVHSGmFGGAVPDALTTLVRLLATLHDDAGDVAvaglsaregatvdypqdrfraeaglvdgvsligtgriTDRIWTKPALAV 295
                 78999999888889************************************************************************************* PP

                 EECCE-C...CCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCCSTT CS
   M20_dimer  61 tgiegGs...aknvipdeaeakidiRllpgedpeevleeieeilekeaped 108
                  gi++     a+n++++ a+ak+++Rl pg+dp+++ ++++e+l k+ap++
  KIR63366.1 296 LGIDAPAtgeAPNALVPAAKAKLSVRLAPGDDPQRAYAAVREHLTKHAPWG 346
                 *****88999**************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 3004.74
//
Query:       KIR63367.1  [L=68]
Description: hypothetical protein TK50_21300 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 500.13
//
Query:       KIR63368.1  [L=542]
Description: ATP-dependent DNA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-38  130.7   0.0      7e-38  130.3   0.0    1.2  1  DNA_ligase_A_M  ATP dependent DNA ligase domain
      3e-12   47.0   0.1      1e-11   45.3   0.1    2.0  1  DNA_ligase_A_C  ATP dependent DNA ligase C terminal region
    1.7e-10   41.5   0.0    6.3e-08   33.1   0.0    2.5  3  DNA_ligase_A_N  DNA ligase N terminus
    7.2e-07   29.7   0.0    1.1e-06   29.0   0.0    1.3  1  RNA_ligase      RNA ligase


Domain annotation for each model (and alignments):
>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.3   0.0   1.6e-41     7e-38       1     204 []     186     410 ..     186     410 .. 0.93

  Alignments for each domain:
  == domain 1  score: 130.3 bits;  conditional E-value: 1.6e-41
                     -EEEEEESCHHHHHHHTTTSEEEEEEEESSEEEEEEEETTEEEEEETTS-B-GGGCHHHHHHHHHHBSTTESEEEEEEEEEEEETTTTCBEHHHH CS
  DNA_ligase_A_M   1 pmLAeslksiekalkkleekafivEiKyDGeRaqvhkegdkvklfSRrlkditaakpelvkalkeafkkdeksvilDGElvavdketgeilpfqk 95 
                     pmLA+s+ ++ +al    + +++v++K+DG R+qvh++g ++ +f+R+l +it++ pe+v a++++ +    +++lDGE++ +d +tg++lpfq+
      KIR63368.1 186 PMLASSAPTVDDALAAT-GVPAVVDVKLDGIRIQVHRSGPDIAVFTRSLDEITDRVPEVVAAVRALPAR---ELVLDGEAIGLD-DTGRPLPFQQ 275
                     9***************8.89999****************************************666654...7*********86.66******** PP

                     HCHHH.HCHC.............................CTHHHHHHSEEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BTTTEEE--EEE CS
  DNA_ligase_A_M  96 lasrk.kkkk.............................kveeklkeaelclfvFDiLyldgesltdeplkeRrklLeeilkesedrvelaesle 160
                     ++sr+ +++                              + +e + ea l  ++FD+L+ldg++l+d+p +eR + L  ++    d   l+ + +
      KIR63368.1 276 TSSRAaRRSApaagagspddtpasapaadgiapvapavrAAAENTGEAVLTPYFFDLLHLDGDDLIDRPGRERWAALAGAV----DPTLLVGRMT 366
                     *****77777************999999999998887764666668899999*****************************....7778999*** PP

                     ESSHHHHHHHHHHHHHTTECEEEEEETT-CC-TTCEEEEEEEEE CS
  DNA_ligase_A_M 161 vkdveeleelleeaiseglEGlvvKnpdskYepgkrsknwlKvK 204
                     v+d+e + ++++ a+++g EG+vvKnpd++Y +g+r++ w+KvK
      KIR63368.1 367 VDDTEAAGAAFAAALDAGQEGVVVKNPDAPYDAGRRGAAWVKVK 410
                     *******************************************9 PP

>> DNA_ligase_A_C  ATP dependent DNA ligase C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.1   2.3e-15     1e-11       1      99 []     429     521 ..     429     521 .. 0.93

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 2.3e-15
                     GGGSEEEEEEEEEE..TTEEEEEEEE-SS--HHHHHHHHHHHGGGEECTTCESS---HHHHTTEEE-TT-EEEEEESEEECTSSSTT..EECT-E CS
  DNA_ligase_A_C   1 rgglvgslllgvyd..dgkleyvgkvgtGfsdaeleelrkklkelerkkppfaekvpeeekrdvWvePelvveVkfaeitasgkyka..slRfPr 91 
                     r+g+++ l lg++d  +g+++++gk+  G++d+ l++ ++++  l  ++  +           v v+Pe vve++f+ +++s +y+   +lRf+r
      KIR63368.1 429 RSGWLSNLHLGARDpaTGEFVMLGKTFKGLTDEVLRWQTERFLALAVERGDW-------V---VRVRPEQVVEIAFDGVQTSSRYPGgmALRFAR 513
                     6799**************************************9888888888.......1...2299*******************99******* PP

                     EEEE-TTS CS
  DNA_ligase_A_C  92 fkrlReDk 99 
                     ++r+R+Dk
      KIR63368.1 514 VVRYRSDK 521
                     *******8 PP

>> DNA_ligase_A_N  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0035        16       2      66 ..       3      63 ..       2      65 .. 0.86
   2 !   33.1   0.0   1.4e-11   6.3e-08     104     173 .]      68     138 ..      61     138 .. 0.93
   3 ?    0.9   0.0      0.11   4.9e+02      63      97 ..     132     166 ..     129     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0035
                    CHHHHHHHHHHCC.---HHHHHHHHHHHHHTS-..SHHHHHHHHHHSS-CCCS------HHHHHH CS
  DNA_ligase_A_N  2 FaelaelfekieestkkrlekrailanffrkvesagpedlypalrLllPdydgreygigesllak 66
                    F +la++ +++ + t+ r +k+++la+ +r+++   p+++ + +  l++++++r+ g+g+  l+ 
      KIR63368.1  3 FLDLAATSAAVGA-TTGRRAKVDLLAAALRALD---PAEVPAGAGWLAGELRQRQTGVGWAGLRD 63
                    889999999****.888999*********9975...87888888889999999999999988875 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 1.4e-11
                     ------BHHHHHHHHHHHHH-.STTHHHHHHHHHHHHHHHS-HHHHHHHHHHHCT---SS--HHHHHHHHH CS
  DNA_ligase_A_N 104 akkspltieevnelLdklaaa.gkgsedekkkilkkllkraspeEakyliriilkdlriglsektvldala 173
                     a++++lt++ v++  d++a+  g gs+++++++l +l+++a+++E+++l  +  ++lr g++++++ da a
      KIR63368.1  68 AAEPTLTVRAVDAAIDDIASVaGPGSQARRRQLLHGLFAAATADEQRMLRGLFSGELRQGAQAGLLADAVA 138
                     67899*************9778*****************************************99999875 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.11
                     HHHHHHHHHHT--HHHHHHHHHHHS-HHHHHHHHH CS
  DNA_ligase_A_N  63 llakalaealglskkkikdalakvgDlgevaeevl 97 
                     lla a+a+a+ ++ + ++ al  +gDl  va ++l
      KIR63368.1 132 LLADAVARAADVPLAAVRRALLLAGDLRAVAVAAL 166
                     799**********99999996667******98766 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   2.5e-10   1.1e-06       4     161 .]     207     410 ..     204     410 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 2.5e-10
                 EEEEE-SSEEEEEEEE.TTEEEEETTCEBCTTTHHHHHHTHHHHHHHHHHHHH..ECCEEEEEEEES..............SS..TTSS.......... CS
  RNA_ligase   4 vvtEKlDGtnfriylv.kevgvasRsqilpfgeekfkefkrwaaalrkklkeklaneelilyGElig.............hsikygglpk......... 79 
                 vv +KlDG +++++ + +++ v++Rs +        +   + +aa r+     l  +el+l GE ig             +        +         
  KIR63368.1 207 VVDVKLDGIRIQVHRSgPDIAVFTRSLDE-----ITDRVPEVVAAVRA-----LPARELVLDGEAIGlddtgrplpfqqtS--------Sraarrsapa 287
                 899************9744*******988.....22333444444443.....34468*********87655443333221........1445556677 PP

                 ......................................EEEEEEEEEEECTTBECE--HHHHHHHHHCCT.B..EEEEE.SS.HHHHHCCC.....HHH CS
  RNA_ligase  80 ......................................efyvFdifdirdkeeqrylspdevealakglg.tvpvlyegkfl.aaeellel....llsk 134
                                                         y Fd+++++    ++  ++  +e +a+  g   p l  g+++ + +++++         
  KIR63368.1 288 agagspddtpasapaadgiapvapavraaaentgeavlTPYFFDLLHLD---GDDLIDRPGRERWAALAGaVDPTLLVGRMTvD-DTEAAGaafaA-AL 381
                 88888889999***********************99998899****998...88899999999999977788999999999853.33444456541.45 PP

                 HTC--EEEEEESSSSBE.TTE.BSEEEEE CS
  RNA_ligase 135 gnkrEGlVikpeselyk.nkg.raifKvk 161
                 +  +EG+V+k++++ y+   +  a++Kvk
  KIR63368.1 382 DAGQEGVVVKNPDAPYDaGRRgAAWVKVK 410
                 679**************88889*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4059.91
//
Query:       KIR63369.1  [L=273]
Description: hypothetical protein TK50_21315 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-31  108.6   0.2      4e-31  108.6   0.2    1.3  2  SURF1     SURF1 family


Domain annotation for each model (and alignments):
>> SURF1  SURF1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   0.2   2.2e-35     4e-31       2     176 .]      19     234 ..      18     234 .. 0.73
   2 ?   -3.9   0.0      0.78   1.4e+04      98     104 ..     241     247 ..     240     259 .. 0.68

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 2.2e-35
       SURF1   2 vpvvvlfgLGtWQlqRlkwkealiaeleerlaaeplplleka.......leal.....e.efeyrrvtvtGrfdhdkevlvgn..gqprvGylvltplr 85 
                 v+++v++ LG WQl+R++ ++a+++++++  ++ p+pl +++          +     + e+++ rvtvtGr+d+ + vlv+    ++rvG++++tpl+
  KIR63369.1  19 VAAAVMVLLGNWQLDRYRGRTAINERIDAGSRMTPVPLRDAVpaptggdG--TagpapAdEATWSRVTVTGRYDTANIVLVRGrtVDNRVGFEIVTPLV 115
                 7889*********************************8555566655540..15566645999**********98899999966644566********* PP

       SURF1  86 leddgeavlVnrGWvpaea.eklpka...apegeevrevtGllr.ksstpape.......eesgewqvqsidvaalaealgaq..............kv 158
                 l +dg+avlV+ GWvp +   +l++    +++ +ev+ v+G+++ +      e       + +g+ ++++i v++la++l+ +                
  KIR63369.1 116 L-ADGTAVLVDQGWVPPAPgGALAQPqlpPVPPGEVT-VVGRVHpT------EsgagavdRRDGRLETRRITVPRLARELP-YpvygayvlldeqtpA- 204
                 *.67***********9977744444467744445688.******31......2222323223333478***********63.2122333444433333. PP

       SURF1 159 lpvvl................hlgYaltWfglaa 176
                                      ++gY+++W+++a+
  KIR63369.1 205 ----AdpvfqavpightnnwqNFGYVVQWWIFAV 234
                 ....04445567777788888***********96 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 0.78
       SURF1  98 GWvpaea 104
                 GWv++++
  KIR63369.1 241 GWVARRE 247
                 9999855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2041.02
//
Query:       KIR63370.1  [L=463]
Description: cobyrinic acid ac-diamide synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-12   47.2   0.0    3.4e-12   46.5   0.0    1.3  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain
      3e-10   40.0   0.0    4.4e-10   39.5   0.0    1.1  1  GATase_3  CobB/CobQ-like glutamine amidotransferase domain
    5.6e-07   29.6   0.0    6.7e-05   22.8   0.0    2.4  3  AAA_26    AAA domain


Domain annotation for each model (and alignments):
>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   5.8e-16   3.4e-12       5     116 ..      11     183 ..       7     195 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 5.8e-16
                 ESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH..HTTEB-HHHH............................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx............................................... RF
        CbiA   5 stkGGvGKTtlaanLaralarrglrVllvDaDpqannlai..leglendiep............................................... 54 
                 + ++G G + +a++L++a+a+rgl+V+ ++++p+   + +  l    ++                                                  
  KIR63370.1  11 APSSGHGTSAVALGLLAAFAERGLDVAGFKVGPDQVDAGYlgL--AAGRP-Grtldarlvgpervpalfghgaagaglavvqgtmglydsvagqpetes 106
                 6789******************************777765442..22222.2466899999999*********************************** PP

                 ................CCHCCCHHHHHHCHCHHHH.....EEEEEEEEESS...-TTCHHHHHHHHHHCTS-EEEEEE--C CS
                 ................xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ................dlkrllellealgkkkall...lkiagvvlnrvdgeneetllkealeelkqrygvpvlgviprde 116
                                 d+ +++++++al+++++     l + gv+lnrv ++++e++l+eal+++    gvpv+g ++r e
  KIR63370.1 107 taavaialrspvvlvvDVASMGQSVAALVHGFRAYdeqLWLGGVILNRVASPRHEAMLREALDDV----GVPVYGAVRRHE 183
                 *******************************999899999************************9....******998876 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   7.3e-14   4.4e-10      17     161 ..     279     417 ..     272     440 .. 0.86

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 7.3e-14
    GATase_3  17 dpLeaepevrvrfvplkdeslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeeiedpegvegeageveglglLdiet 115
                 ++L+a++++ vrf pl+de+l++ a +++++Gg ++  + +l+++++l  a++e+a++g+pvl++  Gl  L +e+            ++++g+Ld+  
  KIR63370.1 279 ELLRAAGAEVVRFDPLRDEALPAGAAALVVGGGLPESYAEQLSANRRLCIAVAELARTGRPVLAEGTGLLWLARELD----------GLPMCGVLDAVG 367
                 78*************************************************************************87..........379********9 PP

    GATase_3 116 efekekltgqvegevel....aaegeevkGyEiHsGrtilkekakpllkv 161
                 + ++  ++g   ++++     a++g++v Gy  H+   + ++++ p+  +
  KIR63370.1 368 ASRDGVVVGYRSATARTdsvlAPAGATVVGYKEHRAVLTPRAGQAPAWSW 417
                 9999666655555544488998899*********9988888888887776 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0065        39       3      36 ..       7      40 ..       6      47 .. 0.90
   2 !   22.8   0.0   1.1e-08   6.7e-05     103     188 ..      87     179 ..      79     184 .. 0.75
   3 ?   -3.8   0.0       1.5   9.2e+03      93     110 ..     331     348 ..     316     349 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0065
      AAA_26  3 ifvtgtdtgvGKTvvslgLvralkrkgvkvgyfK 36
                +++++ + g G ++v+lgL++a+ ++g  v+ fK
  KIR63370.1  7 LVLSAPSSGHGTSAVALGLLAAFAERGLDVAGFK 40
                78899999***************99999988766 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.1e-08
      AAA_26 103 vVEGagglg...vpiteellnadiaknlgapvilVarggl.g.tinqllltiealrqknvrvlGvilNkvrnpenvetlekksg...ipvlGvv 188
                 vV G+ gl     ++ e++++a +a +l++pv+lV+ + + g ++++l+    a+ ++++ + GvilN+v++p+  ++l+++     +pv+G+v
  KIR63370.1  87 VVQGTMGLYdsvAGQPETESTAAVAIALRSPVVLVVDVASmGqSVAALVHGFRAY-DEQLWLGGVILNRVASPRHEAMLREALDdvgVPVYGAV 179
                 5666655542225667789******************987652555555555554.568**************988888887665559***998 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 1.5
      AAA_26  93 kelekdadivvVEGaggl 110
                  el+ + ++v+ EG+g l
  KIR63370.1 331 AELARTGRPVLAEGTGLL 348
                 577888899999999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3357.05
//
Query:       KIR63371.1  [L=710]
Description: glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-59  199.3   0.7    5.1e-59  198.7   0.7    1.2  1  Transgly        Transglycosylase
    4.8e-30  104.8   1.2    9.8e-30  103.8   1.2    1.5  1  Transpeptidase  Penicillin binding protein transpeptidase dom
  ------ inclusion threshold ------
      0.084   13.2   0.1       0.84    9.9   0.0    2.4  2  MID_pPIWI_RE    MID domain of pPIWI_RE


Domain annotation for each model (and alignments):
>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.7   0.7   8.5e-63   5.1e-59       4     177 ..      74     258 ..      70     259 .. 0.91

  Alignments for each domain:
  == domain 1  score: 198.7 bits;  conditional E-value: 8.5e-63
    Transgly   4 llaeleeeenrelvkleeippalkkavvaiEDrrFyehkGvdlkgiarAvlknlksgkssqGgSTitqQlvknlfl.........see...rtlerKlk 90 
                 +l+ + +ee r+++kl++++p++++a+va+ED+rFy+h+Gvd+kg arA+++n +sg++sqG+ST+t+Q v++++          + e   +t  rK+k
  KIR63371.1  74 VLTMF-YEEYRRYTKLSDMSPNIQQAIVAAEDSRFYQHRGVDPKGAARAFVANSRSGGVSQGASTLTMQFVRMTLRdsaktpkevQ-EatqQTSLRKVK 170
                 45556.799****************************************************************8776555444331.145588999*** PP

    Transgly  91 eavlAlklekklsKdeILeaYlNsvylgrevyGieaAarayFgkdakdLtlaeaalLagllkaPsrynplen.peeakkrrkvvlerm 177
                 e+ +A+ +ek+l+K++ILe YlNs+y+g+++yGi+aAa+ +F+k++++Lt  eaa+Lagl+k+Ps+y+p+++ +++a+ rr++vl+rm
  KIR63371.1 171 EMRMAMDVEKELTKEQILERYLNSAYFGHRAYGIYAAAQIFFSKTPATLTPVEAATLAGLVKSPSEYDPASSdQKDATGRRNYVLDRM 258
                 *********************************************************************7744999***********9 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   1.2   1.6e-33   9.8e-30       3     289 ..     363     667 ..     361     686 .. 0.84

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 1.6e-33
                     EEEEETTT-BEEEEEEESE-TTTHHCC..................TCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTS CS
  Transpeptidase   3 avvldaktgevlamaskpsydpnakvg..................kneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqgg 79 
                     +vv ++ tg++ ama +++y  +   +                     pl+ +     y+ GStfK++ ++aal+ag +  ++ +d s+++++ +
      KIR63371.1 363 IVVAEPGTGRIKAMAVNRNYSLDVSENgpssnpeaspkvkanypnTVAPLLGGGDLPGYQAGSTFKMFPMLAALNAG-MPLSTAYD-SPYRYR-S 454
                     7999*************99965544449999******999888777778888888899*******************.66666555.555555.4 PP

                     S.ECTCCCC-...SSSSEEEHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--B--SSHHHHHHHHHTTT.SBB-HHHHH CS
  Transpeptidase  80 qsikdweqdn...kgsegitlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaGvptrkwlegatisfgiG.ltvtplqla 170
                     +++++w  +n   +  + +t+ + + kS+ntyfv+l++k+gad +   ++++gl  +t++d  + s   + +kw  ga   f+ G   +tpl++a
      KIR63371.1 455 EVYDGWAPSNasgAMTGRQTMWSGFGKSVNTYFVQLEEKVGADAAVRLAEQLGLRWRTDVDREQASPT-KAKKW--GA---FTLGvSDATPLEMA 543
                     67*******99777777889**********************************99888888777777.88899..77...8999999******* PP

                     HHHHHHHTTTEEE--BSEEEEEECTT..........EEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCT......TTTGCG....TCTTS--EEE CS
  Transpeptidase 171 qayaaiangGklvkPhlvkaivdpdg..........vrkvkpkelnklpisketaekvkeglkgvvsrg......sgtata....avegykvagK 245
                     +ayaaia +G + +   v++i + dg           +++  k+  ++++s+++a+  +++ +  + ++       g  ta     ++g +vagK
      KIR63371.1 544 NAYAAIAADGRYCEAMPVQSISQRDGtpatyttaggIEREVAKPRCRQVVSADAARAATDAARCPTGDTpakgscGGWSTAdsvrGTVGRPVAGK 638
                     ****************************99999998888888888999999999999999999888888665555444444655566666***** PP

                     EEEEEECSSSTTSEEEEEEEEEEEEEESTTS-SEEEEEEECTCS CS
  Transpeptidase 246 TGTAevagkkgngkkegakiswfvgyapadnpkyavavlieqpk 289
                     TGT+        +       +wfvgy+p     +a a  i +p+
      KIR63371.1 639 TGTTDSTR----S-------AWFVGYTPE----LAAASFIADPD 667
                     ***99986....3.......4******96....77777777776 PP

>> MID_pPIWI_RE  MID domain of pPIWI_RE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00014      0.84      62      97 ..      90     128 ..      67     171 .. 0.85
   2 ?    0.2   0.0      0.14   8.4e+02     106     138 ..     234     266 ..     230     269 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00014
  MID_pPIWI_RE  62 aerptl..alveiegkskakkrsdsDPKfalRlglak..a 97 
                   +  p +  a+v +e+  +++++++ DPK a R   a+  +
    KIR63371.1  90 DMSPNIqqAIVAAEDS-RFYQHRGVDPKGAARAFVANsrS 128
                   4456666699*99999.***************98887444 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.14
  MID_pPIWI_RE 106 ppekakaedkaelkhraqaAvlDllrqlGvlpv 138
                   p+e ++a ++++++   ++ vlD ++qlG+l++
    KIR63371.1 234 PSEYDPASSDQKDATGRRNYVLDRMAQLGYLSP 266
                   66888888899988888999*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.23s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 5130.99
//
Query:       KIR63372.1  [L=387]
Description: aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.1e-32  110.8   0.0      1e-31  110.4   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.0   5.8e-36     1e-31      19     361 ..      67     379 ..      55     381 .. 0.86

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 5.8e-36
                    HHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTT CS
  Aminotran_1_2  19 tlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsg 114
                    ++p+++   +   +a g+l+ y++++    ++ a+a  +g        +e +v+++ Ga ++ ++l+++l+    ++ +v  p +++ + +lr++g
     KIR63372.1  67 PMPDWLADPIT--AALGELAAYPDPR---PARAAVAARHG------RPPE-EVLLTAGAAEGFVLLARALT--GARRPVVVHPQFTEPEAALRAAG 148
                    57777766665..9999999****99...89*********......5666.*******************6..66666666799************ PP

                    SEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSS.HTHHH.HGGST CS
  Aminotran_1_2 115 gevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl.davat.ranve 208
                     +v r+ l+++++f+ld   + +             ++ v +p NPt ++ + ++l +l   a+  + +l+vDea+a++   +  d ++  +a   
     KIR63372.1 149 HPVERVLLDPADGFRLDPARVPA----------DADLVMVGNPTNPTSVLHPAADLAAL---AR-PGRVLVVDEAFADTTAAPGvDGEPEsLAARR 230
                    ***********************..........4459**********************...55.6***************954543332122222 PP

                    TSTT...EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS.TEEEE CS
  Aminotran_1_2 209 eepn...llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael.glkvl 300
                       +   l++v+sl K +GlaG+R+Gy+lg a ++  l+ ++  + +s+++ aa++a +s a        + +++l++ r++l+ +L +l g+ v 
     KIR63372.1 231 ---DlpgLVVVRSLTKTWGLAGLRIGYLLGEAPLLARLAAAQPLWAVSTPALAAATACASPAAVA--AERAIAAELAADRDHLVTRLSALpGVRVA 321
                    ...2357*****************************************************99954..99******************999****** PP

                    CCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS..TTEEEEECTTS-HHHHHHHHH CS
  Aminotran_1_2 301 asqsgmflltdlsaetakelskkLleevgvyvtpgtsftv..pgrlRitvAglteeeleelve 361
                    + ++  f+l++l+ +    + + L+e+ g +v++g  f      +lR+ v   ++++ + +++
     KIR63372.1 322 GRPASAFVLVHLPGA--AGVRQRLRER-GWAVRRGDTFPGlgADWLRVAV--RDRATTDTFAQ 379
                    ***888888888888..788999****.99999987776669********..99998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 3362.36
//
Query:       KIR63373.1  [L=368]
Description: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.7e-125  416.9  13.0   6.5e-125  416.7  13.0    1.0  1  DBI_PRT   Phosphoribosyltransferase
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.18   11.8   0.0    1.3  1  TsaE      Threonylcarbamoyl adenosine biosynthesis protein Ts


Domain annotation for each model (and alignments):
>> DBI_PRT  Phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.7  13.0  7.2e-129  6.5e-125       1     329 []       9     365 ..       9     365 .. 0.95

  Alignments for each domain:
  == domain 1  score: 416.7 bits;  conditional E-value: 7.2e-129
                 ....XHHHHHHHHHHHCTBSSSTTTTHHHHHHHHHHHCHHCGTTS---E.EEEEEEEE-BGGGGGT--SS-TTHHHHHHHHHHCT-SHHHHHHHHCTEE CS
     DBI_PRT   1 iepldeeameaararldsltkPlgsLGrLeelavqlagiqgtlkpelek.kavlvfagDhGvaaegvsaypqevTaqmvenflaggaavnvlarqagae 98 
                 i+plde am aa +   +ltkP+gsLG Leel+v+lag+ ++++p+l + +av++fagDhGv+a+gv+ +pqevTaqm+ nflagga vn++arqaga+
  KIR63373.1   9 IRPLDEPAMVAAGELHGRLTKPAGSLGVLEELSVRLAGLARSCPPPLPEpAAVAIFAGDHGVHAQGVTPWPQEVTAQMIGNFLAGGAVVNAFARQAGAS 107
                 789******************************************776637899********************************************* PP

                 EEEEEEE-S.--T........................EE--SSSSB--TTTS-SS-HHHHHHHHHHHHHHHHHHHCTTECEEEEEEE-TTCHHHHHHHH CS
     DBI_PRT  99 lrvvDvgva.dle........................vdrkvrrgtaniakepAmtreeaeaaleaGieladeladagadllalGemGigNttaaaall 172
                 ++vvDvgva +l+                        v ++vr gt+++a+++A+tr+ea aa+e+Gi++a+el+daga +l++G+mGigNtt+aaal+
  KIR63373.1 108 VTVVDVGVAtPLPpavpaqadgppgdpagrstrtprlVAANVRPGTRDLAVTAALTRDEALAAVETGIRIARELIDAGAGILLTGDMGIGNTTPAAALV 206
                 *******8888878888777766666666666666654479********************************************************** PP

                 HHHHT--HHHH---TTT--HHHHHHHHHHHHHHHHCH..-TT.HHHHHHHHS-HHHHHHHHHHHHHHHTT--EEE-SHHHHHHHHHHHHHSGGGGGGEE CS
     DBI_PRT 173 aallglepeevvGrGtglddeglarKiavieqalarh..aekdplevLakvGGleiaalaGailgAaarripvvlDGfistaAalvAvrlapevkdyli 269
                 aa++g +p+e++GrGtg+dd ++arKi v+++alarh  +++dpl vLa+vGGle aalaG+ilgAaarr+pv+lDG+i+++Aal+Av++ap++   l+
  KIR63373.1 207 AAFTGVDPAEATGRGTGVDDPTYARKIGVVRAALARHapDPADPLGVLAAVGGLEHAALAGLILGAAARRVPVLLDGVIAVSAALAAVAFAPDAVGALV 305
                 *************************************54456********************************************************* PP

                 E-B--SSTCHHHHHHHHT---SB-S---S-TTHHHHHHHHHHHHHHHHCCHS-BHHHHT- CS
     DBI_PRT 270 ashrsaepghkllleaLgleplldlglrlGEGtGAalalplleaAaallnematfeeagV 329
                 a+hrsaepg+++ l++Lgl+pl+dlglrlGEGtGA+lalp++  A+++l+e+atf++agV
  KIR63373.1 306 AGHRSAEPGATAGLRHLGLDPLIDLGLRLGEGTGALLALPVVTGAVRVLHEVATFDSAGV 365
                 **********************************************************98 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     2e-05      0.18      10      43 ..     173     209 ..     164     230 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2e-05
                 HHHHHHHCH...TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  10 lgkklakal...gdvilLeGdLGaGKTtlvrglakal 43 
                  g ++a++l   g+ ilL+Gd+G G Tt + +l++a+
  KIR63373.1 173 TGIRIARELidaGAGILLTGDMGIGNTTPAAALVAAF 209
                 455566655444667*************999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2856.38
//
Query:       KIR63374.1  [L=414]
Description: uroporphyrin-III C-methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-45  154.9   4.8    2.8e-45  154.9   4.8    2.1  2  TP_methylase   Tetrapyrrole (Corrin/Porphyrin) Methylases
    1.7e-21   76.6   0.0    4.4e-21   75.3   0.0    1.8  1  NAD_binding_7  Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.2     0.032   2.9e+02      64     100 ..     100     145 ..      21     155 .. 0.62
   2 !  154.9   4.8   3.1e-49   2.8e-45       1     212 [.     176     388 ..     176     389 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.032
  TP_methylase  64 a........yeeiaeal.aealragkdVvllvsGDPlvygtgselv 100
                   +         +++ +++ a       +V++l +GDP  + t++  v
    KIR63374.1 100 RifcvraddRAAATAWTpAVTRHGPVTVAVLGGGDPRRAMTVRDAV 145
                   0444444323333333344444445679999999996666655555 PP

  == domain 2  score: 154.9 bits;  conditional E-value: 3.1e-49
  TP_methylase   1 klylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeeleleapmgkekepleeayeeiaealaealragkdVvllvsGDPlvygtgs 97 
                   ++ lVG+GpGdpel+Tv++ r+l +advv++d+ +++ +lld l+  +el++  + +  p+ +a+eei+++l++++ ag  Vv+l++GDP+v+g+g+
    KIR63374.1 176 RVALVGAGPGDPELITVKGWRLLTEADVVVADR-LVPGLLLDELRTGVELVDASKIPYGPS-RAQEEINRILVDRALAGAFVVRLKGGDPYVFGRGG 270
                   589******************************.******999988775555555554544.89********************************* PP

  TP_methylase  98 elvealrareagieveviPGvsslqaaaarlgiplteggevlsvl......lpglakeeereleallangdtlvllkaprklaelaelLkea.lydd 187
                   e++ a++a  ag++v v+PGv+s  aa+a++g+p+t++ +++ ++       p+ ++ +  +++al+  ++tlv+l+++++la +   L+ + +++d
    KIR63374.1 271 EELLACAA--AGVPVTVVPGVTSSIAAPAAAGVPVTHRAVAHEFTvvsghvAPD-SPASLVRWDALAGLRGTLVILMGLKNLAAITGTLIGHgRPAD 364
                   ***99999..********************************9999***97444.66799999999999***********************77775 PP

  TP_methylase 188 ttpvavveragtedervvrgtleel 212
                   t pvavv++++t d+r  r+tl+++
    KIR63374.1 365 T-PVAVVQEGTTGDQRSLRSTLGAV 388
                   5.********************976 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.0   4.9e-25   4.4e-21       3     104 .]      11     118 ..       9     118 .. 0.90

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 4.9e-25
  NAD_binding_7   3 ldlkgkkvlvvGgGevAarkvrklleagakvtvvapevkeele.....elvklaeeel.ekdlegadlviaatddrelneriaeaakarrilvnva 92 
                    l+l g++v+vvGgG vA+r+v  ll+aga+v +v+pe++++l      ++++++++ + ++dl+ga lv aa+dd+   +++ +aa +rri++ +a
     KIR63374.1  11 LRLAGRRVVVVGGGAVATRRVPALLDAGADVLLVSPELTPALRahvdaGRLHWEPRRFaPDDLDGAWLVQAAVDDPVAAAAVSAAAAERRIFCVRA 106
                    6899*********************************96666655666777899999968************************************ PP

  NAD_binding_7  93 dkpelcdfifpa 104
                    d+++  +  +pa
     KIR63374.1 107 DDRAAATAWTPA 118
                    **9998877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2846.09
//
Query:       KIR63375.1  [L=868]
Description: trehalose phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-35  122.3   0.0    2.4e-35  121.8   0.0    1.2  1  Trehalose_PPase  Trehalose-phosphatase
    3.3e-35  121.7   0.0    1.2e-32  113.2   0.0    2.1  1  Glyco_hydro_15   Glycosyl hydrolases family 15
  ------ inclusion threshold ------
      0.013   16.3   3.8        5.7    8.0   0.0    4.0  4  TPR_14           Tetratricopeptide repeat
      0.018   15.7   3.9         11    6.8   0.0    4.9  5  TPR_16           Tetratricopeptide repeat
      0.023   15.2   0.2        2.3    8.8   0.0    2.9  2  TPR_19           Tetratricopeptide repeat
      0.072   12.8   0.0        6.4    6.4   0.0    2.1  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
       0.29   11.9  11.9        2.5    9.0   0.1    4.6  4  TPR_4            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Trehalose_PPase  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.0   9.3e-39   2.4e-35       2     203 ..      37     228 ..      36     249 .. 0.91

  Alignments for each domain:
  == domain 1  score: 121.8 bits;  conditional E-value: 9.3e-39
                      EETBTTTB---SSGGG--B-TTHHHHHHHHHTTS-..EEEE-SS-HHH.HHHHH---SSEEEEGGGTEEE-TT--EEE-HHHHTTHHHHHHHHH CS
  Trehalose_PPase   2 lDydGTlspivedpdaavpssellslLkkLasdpknvvaivSGrslke.eellvkvpelglaaeHGaeirspsgedwenqaevedlewlkevke 94 
                       DydGTl pivedp +avp +e + ++++La+ p+++va+vSGr l++ + l   ++e  l+++HG+e      e  +     e ++++ ++++
       KIR63375.1  37 CDYDGTLAPIVEDPSKAVPLPESVAAVRALAALPQTTVAVVSGRALRDlAALSRLPSEVHLVGSHGSEFDIGFVERLS----PELIAVRTRLRD 126
                      5***********************************************5555555679***********999996666....6999******** PP

                      HHHHHHTTSTT-EEEEETTEEEEE-TT--TT..THHHHHHHHHHHHHHH.--EEEE-SSEEEEE-S---HHHHHHHHHHTS--------EEEEE CS
  Trehalose_PPase  95 ileektertpGsyiEekkfalsvHyrnaddeelqakelaehlesvltdkpdlevtqgkkvvevrpqgvsKGkaverlleslgsadseddfvlci 188
                       l+e +++ pG+ +E+k ++++vH+r +d++   a ++ ++++s + ++ ++ vtqgk+v+e+  + + KG av++l ++l  +      vl+i
       KIR63375.1 127 ALREIANAHPGVRLERKPASVAVHTRGVDPQ--VAAAAVDAVRSGPATWDGVTVTQGKEVIELSVVATHKGTAVDQLRTQLSAS-----AVLFI 213
                      *******************************..999999**************************************9999976.....9**** PP

                      E-SSTTHHHHTTS-T CS
  Trehalose_PPase 189 GDdrtDedmFsvlrk 203
                      GDd+tDe++F +l+ 
       KIR63375.1 214 GDDVTDENAFGNLHG 228
                      **********98876 PP

>> Glyco_hydro_15  Glycosyl hydrolases family 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   0.0   4.9e-36   1.2e-32       3     447 ..     496     859 ..     494     860 .. 0.90

  Alignments for each domain:
  == domain 1  score: 113.2 bits;  conditional E-value: 4.9e-36
                     HHHHHHHCBCSTTSSBTTS-TT-B-S-S-BSSS.........B--SEEHHHHHHHHHHHH.......HHHHHTTT-HCCHHH...HHHHHHHHHH CS
  Glyco_hydro_15   3 rldlylrnvktlilleqnpvtGlliASpstsdp.........DYrytWvRDsvyvilavwglgyrdedrakayeleqslvkl...mrglleamvr 85 
                     ++dl++r++ tl  l  ++ tG + A+ +ts+p         DYry+W+RD+++++ a++ lg  +e+++   +++  ++++    +  l+  ++
      KIR63375.1 496 ARDLVARSALTLRGLCHEA-TGSILAAATTSLPeelggvrnwDYRYCWLRDAAMTARALVDLGSTEEAEGLLRWVDGCIERTgghPE-RLHPLYT 588
                     789************9999.*******************************************99*****99998876665422133.6****** PP

                     HCTS-BTTB-TTSCGGGG--EE-TTS-B--S-..-S--BTTHHHHHHHHHHHHHCTTHCHCCCCHHHHTHHHHHHHHHHHTTS-EE-TTS--ECE CS
  Glyco_hydro_15  86 qagkvekfketqstkgLhakyftktgstvvGddewghlQlDatslyllalaqmtasglqiistldevafvqnlvdYieaayktpdfglWEenqge 180
                      +g  e   e   +    ++++ ++ +++vG+ + ++lQlD+ + ++ ++a++ ++   + ++ + v   +n+v+ + + + +pd g+WE +   
      KIR63375.1 589 VDGY-ELGAEAVID---TLPGYAGSRPVRVGNLANHQLQLDVFGPIADLIAAVADARGSVREDEWRV--LENMVEAVRRRWHEPDHGIWEARLPP 677
                     ***7.888888888...8***********************************99999999999999..*********************77666 PP

                     EHH..HHHHHHHHHHHHHHHHHHCT-HHHHCCHHHHHHHHHHHHHSTTT..GGGEETTCCECECSCH.....HHHTTS--S-BCHHHHHHHHCS- CS
  Glyco_hydro_15 181 selnassvgmakAlleaideadlfgakgdaqlvektkdeilnklqgkygckrgfwplfntylildgsfaedkeqvqeyrealdasllllpelyfv 275
                     ++   s+v+ +  +++a+  +++ g  +d   + + +d i   +      + g   +   y  ++g+            e++das l +  ++  
      KIR63375.1 678 RHHIFSKVMCWMTVDRALHVVRQHG-GEDRPEWVELRDRIGANV-----LEYGWHADVEAYSVAYGD------------EDMDASSLWIGLSGLL 754
                     66668********************.666667888*****9998.....666767777788888888............**************** PP

                     TTS-TT-TT-TTTSHHHHHHHHHHHHHHHHHSGGGTT-STTS--SBTT--CGSSSBSCT--BHHHHHHHHHHHHHHHHHHHHHTE-EEEECCCHH CS
  Glyco_hydro_15 276 paddvdeeyqnpqsprllaqslyildsllsegflavgeldplvrRysedvkpdklglsGrpyylctlwtvetlldelyekagkgrlwglvryalg 370
                     p dd          pr+l+++l i+++l+s g+         v+Ry  d   d+l + ++ + +ct+w     l e+y ++g+       + a +
      KIR63375.1 755 PGDD----------PRFLSTVLRIEADLRS-GP--------VVYRYHWD---DGLPGREGGFHICTAW-----LIEAYLRTGRR------TDAEE 816
                     ****..........***************9.44........3******9...679*************.....**********4......59999 PP

                     HHHHHTTTTTGGGSSEEETCHHHHHHHHHHHHHHHHHHHHHHS-TTS---SEE-TTT--EESSTT-HHHHHHHHHHH CS
  Glyco_hydro_15 371 lleklveskqltvGlpperesvisaplpveeladliveaveednslgvLteevdvylgeliraqpllfsealllrig 447
                     l+ ++v+                                   +  +g+L e++d    + +++ p+++s++ l+r++
      KIR63375.1 817 LFAQMVDT----------------------------------AGPTGLLPEQYDPLAERGLGNHPQAYSHLGLIRCA 859
                     9*****99..................................89999999999998888999999999999999886 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0         7   1.8e+04       8      14 ..      63      69 ..      58      75 .. 0.52
   2 ?   -2.2   0.1       4.3   1.1e+04      12      29 ..     244     261 ..     241     265 .. 0.71
   3 ?    6.6   0.0    0.0066        17       5      27 ..     547     569 ..     543     587 .. 0.85
   4 ?    8.0   0.0    0.0022       5.7       5      31 ..     799     825 ..     797     830 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 7
      TPR_14  8 aeallal 14
                ++al+al
  KIR63375.1 63 VRALAAL 69
                3333333 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.3
      TPR_14  12 lalGdpdeAiallrrala 29 
                 ++ G+p eA+++l  +l+
  KIR63375.1 244 YRVGEPIEAARALGLLLE 261
                 567888888888765555 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0066
      TPR_14   5 lalaeallalGdpdeAiallrra 27 
                 ++ a+al  lG ++eA+ llr++
  KIR63375.1 547 AMTARALVDLGSTEEAEGLLRWV 569
                 5779****************985 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0022
      TPR_14   5 lalaeallalGdpdeAiallrralala 31 
                 + l ea+l+ G+  +A++l+ +++++a
  KIR63375.1 799 AWLIEAYLRTGRRTDAEELFAQMVDTA 825
                 5689******************99864 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       3.1   7.9e+03      13      32 ..     156     171 ..     155     174 .. 0.55
   2 ?    4.0   0.0     0.031        79      25      54 ..     496     522 ..     492     530 .. 0.87
   3 ?    1.2   0.0      0.23     6e+02       2      22 ..     548     568 ..     547     569 .. 0.85
   4 ?    6.8   0.0    0.0043        11      39      63 ..     800     824 ..     794     829 .. 0.79
   5 ?   -1.1   0.0       1.3   3.2e+03      19      46 ..     838     861 ..     833     865 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.1
      TPR_16  13 yddAaaaleaalkrdpssPd 32 
                 ++ Aaaa   a++++   P+
  KIR63375.1 156 PQVAAAAV-DAVRSG---PA 171
                 55566555.555555...65 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.031
      TPR_16  25 krdpssPdaaeAllllgdaalrqgrlaeAa 54 
                 +rd    +a+ Al l+g+++ + g   +Aa
  KIR63375.1 496 ARD---LVARSALTLRGLCHEATGSILAAA 522
                 444...8899***************99998 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.23
      TPR_16   2 alaraalragdyddAaaalea 22 
                 + ara++++g  ++A+ +l++
  KIR63375.1 548 MTARALVDLGSTEEAEGLLRW 568
                 569999999999999999876 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0043
      TPR_16  39 llgdaalrqgrlaeAaalyraalra 63 
                 +l +a+lr gr ++A++l++ +++ 
  KIR63375.1 800 WLIEAYLRTGRRTDAEELFAQMVDT 824
                 7889999999999999999888843 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 1.3
      TPR_16  19 aleaalkrdpssPdaaeAllllgdaalr 46 
                 ++e+ l ++   P  a ++l+l ++al 
  KIR63375.1 838 LAERGLGNH---P-QAYSHLGLIRCALL 861
                 567777777...7.58888888888875 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.059   1.5e+02      32      48 ..     550     566 ..     544     567 .. 0.87
   2 ?    8.8   0.0   0.00088       2.3      29      53 ..     799     823 ..     797     828 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.059
      TPR_19  32 AeallalgqldeAealL 48 
                 A+al+ lg ++eAe lL
  KIR63375.1 550 ARALVDLGSTEEAEGLL 566
                 9*************998 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00088
      TPR_19  29 llLAeallalgqldeAealLdalpe 53 
                 ++L+ea+l +g+ ++Ae+l ++  +
  KIR63375.1 799 AWLIEAYLRTGRRTDAEELFAQMVD 823
                 579****************998765 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0025       6.4       1      63 [.      35     102 ..      35     108 .. 0.81
   2 ?    4.1   0.0     0.012        32     172     216 ..     178     220 ..     164     227 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0025
                  EEEEIIIIIS-....TTS---.HHHHHHHHHHHH.TTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGG CS
  Hydrolase_3   1 ialDlDGTLln....sdkkis.ektkeaikklke.kgikvviATGRslravlpvleelgldlpvialNG 63 
                  +a+D DGTL        k ++ +++++a++ l +  + +v++ +GR lr++  + + l  + ++++++G
   KIR63375.1  35 VACDYDGTLAPivedPSKAVPlPESVAAVRALAAlPQTTVAVVSGRALRDLAALSR-LPSEVHLVGSHG 102
                  79*******8777765566777*********999889************9987766.555666666666 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.012
                  EEESTTEEEEEETT-SHHHHHHHHHHHCT--GGGEEEEESSGGGH CS
  Hydrolase_3 172 tssskgyleimpkgvsKgtalkklakelnisleeviafGDgeNDi 216
                  ++ +k ++e+    ++Kgta+ +l    ++s + v+ +GD+  D 
   KIR63375.1 178 VTQGKEVIELSVVATHKGTAVDQLR--TQLSASAVLFIGDDVTDE 220
                  5678899999999***********9..7788999******98775 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.7   4.3e+03      13      24 ..     245     256 ..     242     257 .. 0.81
   2 ?    7.0   1.1    0.0042        11       6      25 ..     548     567 ..     546     568 .. 0.90
   3 ?    9.0   0.1   0.00097       2.5       4      26 .]     798     820 ..     796     820 .. 0.91
   4 ?   -1.3   0.0         2     5e+03      13      24 ..     842     853 ..     839     854 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.7
       TPR_4  13 alGdldeArall 24 
                 + G++ eA+++l
  KIR63375.1 245 RVGEPIEAARAL 256
                 779999999987 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0042
       TPR_4   6 aLArallalGdldeAralle 25 
                 + Aral +lG  +eA+ ll+
  KIR63375.1 548 MTARALVDLGSTEEAEGLLR 567
                 67****************99 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00097
       TPR_4   4 llaLArallalGdldeAraller 26 
                 +++L +a+l++G+  +A++l+++
  KIR63375.1 798 TAWLIEAYLRTGRRTDAEELFAQ 820
                 789****************9875 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 2
       TPR_4  13 alGdldeArall 24 
                  lG++++A  +l
  KIR63375.1 842 GLGNHPQAYSHL 853
                 58******8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (868 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.72
# Mc/sec: 3636.33
//
Query:       KIR63376.1  [L=466]
Description: trehalose-phosphate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-144  482.2   0.0   1.9e-144  481.9   0.0    1.0  1  Glyco_transf_20  Glycosyltransferase family 20
    1.3e-05   24.8   0.1    0.00031   20.3   0.1    2.3  1  Glycos_transf_1  Glycosyl transferases group 1
    0.00036   21.0   0.5    0.00086   19.7   0.5    1.6  1  Glyco_trans_1_4  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glyco_transf_20  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  481.9   0.0  3.2e-148  1.9e-144       2     472 ..       6     458 ..       5     459 .. 0.98

  Alignments for each domain:
  == domain 1  score: 481.9 bits;  conditional E-value: 3.2e-148
                      -EEEEEEE-SECEEE-S.SCG..EEECCGSSHHHHHCCCHHCCC-EEEEEEECCES-CCC..HCCCCHHHCCCCCEEEEEE-HHHHHHHCCCHH CS
  Glyco_transf_20   2 klvvvsnrlplklereseeekeeyelkkssgglvsalkglkeetevvwvgwlgvevdeseeakekvskeleekfsvvpvflsdekveeyyngfs 95 
                      ++vvv+nrlp++   +  e++   ++ +s+gglv+al+++ +e++++wvgw+g + ++ e       +   e + ++pv ls++++e+yy+g s
       KIR63376.1   6 SFVVVANRLPVDEVNTP-EGR---QWRRSPGGLVTALHPVLAEHQGTWVGWAGGTGPAPE-------PFDLEGIRLHPVPLSADELERYYEGQS 88 
                      689********977777.555...889***************************999999.......66788999******************* PP

                      HHCHHHHHTT-GG....G----HHHHHHHHHHHHHHHHHHHCC--TT-EEEEESGGGTTHHHHHHHCCTTSEEEEEE-S----HHHHTTSTTHH CS
  Glyco_transf_20  96 ksvLWpllHYklpdsseekefersawdaYvkvnklFAdkiveeikdgdliwvhDYhLmllPellRkkledakigfflHiPFPsseifriLpvre 189
                      ++++Wpl+H    d  e+ +++r++ +aY+ vn +FA++++e++ dg+++wv+DY+L l+P +lR+  +d++igfflHiPFP+ e+f+ +p r+
       KIR63376.1  89 NATIWPLYH----DAVETPAYKRRWREAYRLVNARFAEAAAEVAADGATVWVQDYQLQLVPAMLRELRPDLRIGFFLHIPFPPIELFMQMPFRT 178
                      *********....7788***************************************************************************** PP

                      HHHHHHTTSSEEEESSHHHHHHHHHHHHHHSSEEEECTTEEEEETTEEEEEEE------HHHHHHHCCSCHHHHHHHHHHHHT.TTSEEEEEEE CS
  Glyco_transf_20 190 eilegllgadliGFhtedyarhFlsccsrllgleveskrggveykgrkvsvkalpigidverlesalkkesvsekvkelkerfenkkklilgvD 283
                      eil+gllgadliGF+++  a++F+  +++llgl++e +  +++++gr+v+ +a+pi+id+ ++e+ ++++++++++k+++e+++n + +ilgvD
       KIR63376.1 179 EILRGLLGADLIGFQQRLAAQNFVRLARHLLGLRYEGQ--MIQVDGRQVKAGAFPISIDTREMERLAEDPAIQSRAKQIREELGNPRTIILGVD 270
                      **************************************..89**************************************************** PP

                      EC-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEEEEB-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEEES---HHHHHHHHHH-SEEE CS
  Glyco_transf_20 284 rlDyikGvkqkllaferfLeeypelrgkvvlvqiavpsredveeyqelekeveelvgrINgefgtldytPvvylersldfeeliallaaadvll 377
                      rlDy+kG++ +l+af+++L++ +    + v+vq+a+psre+ve+yq+l+ +ve+ vgrINgefg+++   v+yl++s +++el+a+++aadv++
       KIR63376.1 271 RLDYTKGIELRLKAFRELLADGKLTVPDAVMVQVATPSRERVEHYQALRVKVEREVGRINGEFGRVGVPAVHYLHQSYSRSELAAMYVAADVMM 364
                      ********************************************************************************************** PP

                      E--SSBSS-CHHHHHHHCSTTT--EEEEETTBGGGGT-TTTSEEE-TT-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHT-HHHHHHHHHHH CS
  Glyco_transf_20 378 vtslRdGmnlvakeyvvcqqekkgvLiLSeFaGaaqsLkdaailvNPwdieevaeaikeaLkmseeerkkrekkllkqvskhdvqsWaesflse 471
                      vt+lRdGmnlvakeyv+ + ++ g+L+LSeFaGaa +L++ a l NP+d ++v++a+ +a+++++ e ++r++ + +++ +hdv +Wa+sfl+e
       KIR63376.1 365 VTPLRDGMNLVAKEYVASRADQGGALVLSEFAGAATELRQ-AFLCNPHDPDAVKDALLKAVHVEKPEARRRMRVMQRHLRTHDVGHWAKSFLTE 457
                      ***************************************5.6**************************************************98 PP

                      H CS
  Glyco_transf_20 472 l 472
                      l
       KIR63376.1 458 L 458
                      7 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   5.2e-08   0.00031      12     165 ..     260     435 ..     250     440 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 5.2e-08
                      TTT-EEEEEESS-TTTTTHHHHHHHHHCCCCC...HCSCEEEEEES.................STTHHHHHHHHHHHCTTCGGGEEECCHSSSH CS
  Glycos_transf_1  12 nekkkiilsvgrlekeKgvdllikafallkkq...lnpnvklviaG................ngeeekelkklaeelelsdnviflgevsredl 86 
                       + + iil v rl+++Kg++l +kaf++l ++   + p++++v +                  + e  ++  +    ++ + + +++  sr++l
       KIR63376.1 260 GNPRTIILGVDRLDYTKGIELRLKAFRELLADgklTVPDAVMVQVAtpsrervehyqalrvkVEREVGRINGEFGRVGVPAVHYLHQSYSRSEL 353
                      456899***********************988877777777776668****999999998865566678888888999977777777777**** PP

                      HHHHHCESEEEEEESSBSS-HHHHHHHHT....T--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSH..HHHHHH CS
  Glycos_transf_1  87 eellknadifvlpsisEgfGivllEAmaa....glpviasnaggpaevvkdgetGllvkpnnaealaeairkllede..elrerl 165
                       +++ +ad++ ++  ++g+ +v+ E+ a+    g + + s   g+a  ++++    l+ p++++a ++a+ k+++ e  e r+r+
       KIR63376.1 354 AAMYVAADVMMVTPLRDGMNLVAKEYVASradqGGALVLSEFAGAATELRQAF---LCNPHDPDAVKDALLKAVHVEkpEARRRM 435
                      **************************997455578999999877777777665...*****************998866666665 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.5   1.4e-07   0.00086       3     131 ..     265     423 ..     262     425 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.4e-07
                      EEEEES---GG.GTHHHHHHHHHHHH.H.H.....EEEEEES---...HHHHHHHT.T-.................T.TEEEE---...THHHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkk.d.....vrlvivGdgp.rpeeleelaa.gl.................eerveftGfv...edlae 68 
                      +il v rl +  kg++l l+a+ +l+++ +     + +v v   p r+ ++e++ a ++                  + v+++ +    ++la+
       KIR63376.1 265 IILGVDRL-DYTKGIELRLKAFRELLADgKltvpdAVMVQVA-TPsRE-RVEHYQAlRVkverevgringefgrvgVPAVHYLHQSysrSELAA 355
                      55666688.566999999999977775543445565555555.34343.444322221122444455555555444378888887788788*** PP

                      HHHH-SEE.EE--.---SHHHHHHHHT....T-EEEE-TGGGT.TT--TTSSEE--TT-HHHHHHHHHHH CS
  Glyco_trans_1_4  69 llaaadvf.vaPs.egfglkllEamaa....glpvVatdvggi.aevvgengllvppgdpealaeailrL 131
                      ++ aadv+ v P+  g++l++ E+ a+    g + V ++ +g+  e   ++++l++p+dp+a  +a+l+ 
       KIR63376.1 356 MYVAADVMmVTPLrDGMNLVAKEYVASradqGGALVLSEFAGAaTE--LRQAFLCNPHDPDAVKDALLKA 423
                      *******95667777***********74444779999999874144..5789**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3020.82
//
Query:       KIR63377.1  [L=92]
Description: hypothetical protein TK50_21360 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0073   16.2   0.1      0.024   14.5   0.0    1.9  2  RHH_5     CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5
  ------ inclusion threshold ------
      0.047   12.1   0.1      0.047   12.1   0.1    1.0  1  DUF505    Protein of unknown function (DUF505)


Domain annotation for each model (and alignments):
>> RHH_5  CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.7e-06     0.024       2      18 ..       3      19 ..       2      20 .. 0.92
   2 ?   -2.1   0.0      0.41   3.6e+03      34      42 ..      26      34 ..      23      34 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.7e-06
       RHH_5  2 kRvnvtLPeelleeLee 18
                k++++++P+++ e+L+e
  KIR63377.1  3 KKIAISVPDDVAERLAE 19
                99*************87 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.41
       RHH_5 34 Lvekalrea 42
                ++++++r++
  KIR63377.1 26 FITESVRQR 34
                789999985 PP

>> DUF505  Protein of unknown function (DUF505)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   5.2e-06     0.047      92     147 ..      22      76 ..       1      83 [. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.2e-06
      DUF505  92 eiiamleaaekaggkvgeeaeeaLeeRglaeeveaLteaakalleiYreaepklei 147
                 ++ a +  + +    +ge++  aL++ g+   +  Ltea+++l e+  +++p+l+ 
  KIR63377.1  22 NVSAFITESVRQR-MAGERTRRALRQVGFRLTEAGLTEAGQRLDEAQAKITPELRA 76 
                 5667777888876.99*************988888******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 610.21
//
Query:       KIR63378.1  [L=558]
Description: ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-49  166.4   0.0    1.7e-25   90.1   0.0    2.7  2  ABC_tran      ABC transporter
    2.5e-19   70.2   5.9    2.3e-05   24.4   0.0    4.7  5  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.2e-12   47.7   9.9    5.1e-12   45.7   5.1    2.6  2  ABC_tran_Xtn  ABC transporter
    2.5e-09   36.9   2.8       0.25   10.8   0.2    4.2  4  SMC_N         RecF/RecN/SMC N terminal domain
    4.3e-06   26.4   0.5      0.048   13.4   0.1    2.7  2  AAA_29        P-loop containing region of AAA domain
      1e-05   25.6   0.3       0.14   12.2   0.1    2.6  2  MMR_HSR1      50S ribosome-binding GTPase
    3.9e-05   24.1   0.6       0.31   11.4   0.0    2.6  2  AAA_16        AAA ATPase domain
    7.2e-05   22.8   0.3       0.16   11.9   0.1    2.4  2  RsgA_GTPase   RsgA GTPase
    0.00011   22.8   0.2       0.52   10.9   0.0    3.1  2  AAA_18        AAA domain
    0.00012   22.3   0.4       0.32   11.3   0.1    2.9  2  AAA_22        AAA domain
    0.00014   22.4   3.6     0.0019   18.7   1.2    3.3  4  AAA_23        AAA domain
    0.00053   19.8   1.2       0.62    9.7   0.2    2.6  2  AAA_24        AAA domain
    0.00055   19.8   1.7        1.2    8.8   0.1    3.1  3  AAA_15        AAA ATPase domain
     0.0014   18.3   0.2        1.2    8.9   0.1    2.4  2  AAA_30        AAA domain
     0.0016   18.6   0.4        1.5    9.1   0.1    2.8  2  Roc           Ras of Complex, Roc, domain of DAPkinase
     0.0038   17.4   0.4        8.1    6.8   0.0    4.0  2  SbcCD_C       Putative exonuclease SbcCD, C subunit
     0.0056   17.1   0.9       0.81   10.1   0.1    2.7  2  AAA           ATPase family associated with various cellular 
  ------ inclusion threshold ------
      0.012   15.6   0.7       0.47   10.3   0.1    2.7  2  ATPase_2      ATPase domain predominantly from Archaea
      0.022   13.9   3.3      0.044   13.0   0.0    2.5  2  NB-ARC        NB-ARC domain
      0.026   14.6   0.4        0.6   10.1   0.1    2.9  2  AAA_14        AAA domain
      0.031   14.2   1.7        1.4    8.8   0.4    2.4  2  NACHT         NACHT domain
      0.049   13.2   1.6        4.2    6.9   0.5    2.4  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.054   13.5   2.9       0.55   10.3   0.0    2.7  2  Dynamin_N     Dynamin family
      0.077   13.2   4.6       0.95    9.6   0.0    3.0  2  AAA_33        AAA domain
      0.084   11.7   0.2        1.2    7.9   0.0    2.1  2  DLIC          Dynein light intermediate chain (DLIC)
      0.089   12.4   5.5        2.5    7.7   0.0    2.8  2  AAA_27        AAA domain
        0.1   13.0   0.6         12    6.4   0.1    2.4  2  RNA_helicase  RNA helicase
       0.12   11.9   0.5        1.6    8.3   0.1    2.3  2  FeoB_N        Ferrous iron transport protein B
       0.18   11.5   0.6        7.7    6.2   0.2    2.5  2  ATP_bind_1    Conserved hypothetical ATP binding protein
        0.2   10.8   4.1       0.13   11.4   0.3    2.0  2  ISG65-75      Invariant surface glycoprotein
       0.21   10.5   0.7         10    5.0   0.2    2.4  2  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
       0.32   11.2   3.9         10    6.4   0.1    3.1  2  AAA_28        AAA domain
       0.33   10.9   2.4        1.6    8.6   1.0    2.4  2  NTPase_1      NTPase
       0.38   10.3   1.9         14    5.2   0.0    3.3  3  AAA_25        AAA domain
       0.48    9.0   3.0         28    3.2   0.1    3.6  4  AAA_13        AAA domain
          1   10.1   4.2       0.39   11.5   1.1    1.8  1  MRP-L46       39S mitochondrial ribosomal protein L46


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   3.4e-28   1.7e-25       1     137 []      21     188 ..      21     188 .. 0.79
   2 !   73.5   0.0   4.8e-23   2.4e-20       2     137 .]     338     471 ..     337     471 .. 0.82

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 3.4e-28
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................... 79 
                 l+nv+l++ +g k+++vG+nGaGKS+Llk++agl +p +Ge            +      +g l qep l++ +tv  n                    
  KIR63378.1  21 LDNVTLNFLPGAKIGVVGPNGAGKSSLLKIMAGLDRPSNGEA-----------RLMPGYTVGLLAQEPPLNDAKTVLGNveeavaeiksklerfnkiae 108
                 79***************************************9...........5678888999999999999999888888888888888888888888 PP

                 ...........................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ...........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...........................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                                            + d+++e a++ l+ +       + + ++LSgG+++rval+++ll++p+llllDEpt+
  KIR63378.1 109 qmatdysdelmeemgklqeeldaadawDIDSKLELAMDALRCPP-----PDADVTQLSGGERRRVALCKLLLEAPDLLLLDEPTN 188
                 88888777777777766665443333333333444444444444.....333449*****************************8 PP

  == domain 2  score: 73.5 bits;  conditional E-value: 4.8e-23
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren.............esdeeie 86 
                 +n+s++l ++ +v+i+G+nG GK+tL+k++ gl++pt Ge+++               +++++ q+ + l  ++tv e              e+     
  KIR63378.1 338 DNLSFSLPRNGIVGIIGPNGVGKTTLFKTIVGLEQPTGGEVKV-----------GPTVSLSYVDQNrQGLAGDKTVWEVvsdgldhlmvgkvEMP--SR 423
                 89***************************************55...........46778888888877788888888887777777777633444..45 PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++++ +g k+ ++++    ++ LSgG++ r+ la +l    +++llDEpt+
  KIR63378.1 424 AYIAAFGFKGPDQQKP---TKVLSGGERNRLNLALTLKIGGNVILLDEPTN 471
                 5555555555444444...59*****************************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   6.5e-07   0.00032       3      40 ..      35      60 ..      34      88 .. 0.79
   2 !   24.4   0.0   4.6e-08   2.3e-05     234     303 .]     157     220 ..     154     220 .. 0.85
   3 ?   -1.4   0.0       3.3   1.6e+03      52     128 ..     244     311 ..     231     332 .. 0.60
   4 !   20.9   0.0   5.1e-07   0.00026       2      22 ..     350     370 ..     349     394 .. 0.82
   5 ?    3.3   0.0      0.12        58     257     278 ..     460     481 ..     435     490 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 6.5e-07
      AAA_21  3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggg 40
                +++GpNg+GKS+LL+++ +l            +++++g
  KIR63378.1 35 GVVGPNGAGKSSLLKIMAGL------------DRPSNG 60
                68***************999............333333 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 4.6e-08
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHSpllld 303
                 +++lS G +r  al  +ll+a+   +lll+DEp n+L+     + +++l   l++  + v++ TH+ ++ld
  KIR63378.1 157 VTQLSGGERRRVALCKLLLEAP---DLLLLDEPTNHLDA----ESVQWLeQHLAKYAGTVLAITHDRYFLD 220
                 6799******************...9************9....6667773444447789******998876 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 3.3
      AAA_21  52 ydpeipfefeieeflsqgvryryglrlersqveeklssvetllesgllldkrsleeedvfnpeargirggvsvfslk 128
                 y +++++++++e   + +++ r + +le+ +          + + + ++ k  l+++d+  +ea+ +r++ +++ ++
  KIR63378.1 244 YLEKKAARLSVEGRRDAKMKKRLSEELEWVRS---------NAKARQTKSKARLDRYDEMAAEAEKTRKLDFEEIQI 311
                 55555555555533333333333333333333.........666677777777777777777777777666666554 PP

  == domain 4  score: 20.9 bits;  conditional E-value: 5.1e-07
      AAA_21   2 nvliGpNgsGKSnLLdaldll 22 
                  ++iGpNg+GK++L++++ +l
  KIR63378.1 350 VGIIGPNGVGKTTLFKTIVGL 370
                 68****************998 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.12
      AAA_21 257 kgsllliDEpEngLHPkllrrl 278
                  g ++l+DEp n L+ + l++l
  KIR63378.1 460 GGNVILLDEPTNDLDVETLSSL 481
                 3389**********99877665 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   5.1     1e-14   5.1e-12       1      81 [.     227     302 ..     227     309 .. 0.84
   2 ?    3.7   0.0      0.12        62       9      30 ..     523     544 ..     519     550 .. 0.84

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 1e-14
  ABC_tran_Xtn   1 velengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLeklekiekpeekkp 81 
                   +el++g++  Y+GnYs+yle+k++rl  + ++ +k +k++ ++ e+++ +++  +++++ ++r  + + +    ++ ek++
    KIR63378.1 227 LELDRGRAIGYEGNYSTYLEKKAARLSVEGRRDAKMKKRLSEELEWVRSNAK--ARQTKSKARLDRYDEMA---AEAEKTR 302
                   69***********************************************998..77777888888888883...2222333 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.12
  ABC_tran_Xtn   9 teYkGnYseyleekeerleqqq 30 
                     ++Gn+++y + k  rl +++
    KIR63378.1 523 FWFEGNFEAYEKNKVDRLGAEA 544
                   579***********99987766 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.2    0.0005      0.25      19      42 ..      25      49 ..      18      53 .. 0.76
   2 !    8.8   0.0    0.0019      0.95     135     203 ..     128     220 ..      77     226 .. 0.70
   3 !    8.9   0.1    0.0019      0.95      24      44 ..     347     367 ..     338     373 .. 0.87
   4 ?    5.3   0.0     0.024        12     135     202 ..     441     502 ..     404     512 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0005
                EEETTSSEE.EEEESTTSSHHHHHH CS
                xxxxxxxxx.xxxxxxxxxxxxxxx RF
       SMC_N 19 ilpfsksft.aivGpNGSGKsnlld 42
                +l+f ++ +  +vGpNG+GKs+ll 
  KIR63378.1 25 TLNFLPGAKiGVVGPNGAGKSSLLK 49
                566666654159**********986 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0019
                 T..............................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCC CS
                 x..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e..............................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemle 203
                 e                              +LSgGe+  val  l+     +   l llDe   +LD++ v+ + + l +      ++ i++++ +l 
  KIR63378.1 128 EldaadawdidsklelamdalrcpppdadvtQLSGGERRRVALCKLL----LEAPDLLLLDEPTNHLDAESVQWLEQHLAKYA--GTVLAITHDRYFLD 220
                 15555555555556666666666666666669*****9877765442....4556699*******************999988..67888888877665 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0019
                 SSEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAi 44 
                 +++  i+GpNG GK+ l+  i
  KIR63378.1 347 NGIVGIIGPNGVGKTTLFKTI 367
                 56788************9988 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.024
                 TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreeml 202
                 ++LSgGe+  + laL + i       + llDe    LD +  + + + l e       +vis+++ +l
  KIR63378.1 441 KVLSGGERNRLNLALTLKIGG----NVILLDEPTNDLDVETLSSLENALLEFP--GCAVVISHDRMFL 502
                 57*******999999987754....57899*********99999999998877..5567777776665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00094      0.47      24      39 ..      33      48 ..      20      59 .. 0.78
   2 !   13.4   0.1   9.6e-05     0.048      15      39 ..     340     364 ..     336     375 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00094
      AAA_29 24 atlltGpsGsGKSTll 39
                 + ++Gp+G+GKS+ll
  KIR63378.1 33 KIGVVGPNGAGKSSLL 48
                56689*********98 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 9.6e-05
      AAA_29  15 htieidlkgatlltGpsGsGKSTll 39 
                  ++++ ++g++ ++Gp+G+GK+Tl+
  KIR63378.1 340 LSFSLPRNGIVGIIGPNGVGKTTLF 364
                 567888899999************8 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00073      0.36       1      33 [.      33      69 ..      33      84 .. 0.78
   2 !   12.2   0.1   0.00029      0.14       2      22 ..     350     370 ..     349     393 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00073
                EEEEEESTTSSHHHHHHHHHT....STEEESSSTTSS CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltg....ekaivsdkpgtT 33
                ++++vG   +GKS+L++ + g    ++ ++  +pg T
  KIR63378.1 33 KIGVVGPNGAGKSSLLKIMAGldrpSNGEARLMPGYT 69
                699**************99874433345555566655 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00029
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 v+i+G   vGK+tL+++++g 
  KIR63378.1 350 VGIIGPNGVGKTTLFKTIVGL 370
                 89****************983 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.5    0.0017      0.85      29     156 ..      36     199 ..      31     208 .. 0.52
   2 !   11.4   0.0   0.00063      0.31      25     127 ..     348     459 ..     336     486 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0017
      AAA_16  29 lsGesGvGKsslvrellralekd...........ggiflrgkcdqlesaipy....salaqalareellrqlldeaesaeleawrekleeala...... 106
                 ++G+ G GKssl++  +  l +             + +l+++   +++++ +     a+a++ ++ e +++++++     + +++++l e+++      
  KIR63378.1  36 VVGPNGAGKSSLLKIMA-GLDRPsngearlmpgyTVGLLAQEPPLNDAKTVLgnveEAVAEIKSKLERFNKIAEQ----MATDYSDELMEEMGklqeel 129
                 89***********6666.566666765677665412223333333322222244432355555555556666666....33333333333333433333 PP

      AAA_16 107 ..........................avpelagaea....srllellkrllallsrderp.lvlvlDdlqwadeaslqlla 156
                                           +v            +r + +l +ll  l   e p l+l+ +    +d++s q+l+
  KIR63378.1 130 daadawdidsklelamdalrcpppdaDVT------QlsggERRRVALCKLL--L---EAPdLLLLDEPTNHLDAESVQWLE 199
                 34444444444446677777554333333......1334566666667777..2...224144444456678888888776 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00063
      AAA_16  25 elvllsGesGvGKsslvrellralekd.......ggiflrgkcdqlesaipy.....salaqalareellrqlldeaesaeleawrekleealaavpel 111
                 ++v ++G+ GvGK++l +++   le+        g  +     dq++++++       ++ + l   +l+    ++++ a  +a+  k +++ ++++ l
  KIR63378.1 348 GIVGIIGPNGVGKTTLFKTIV-GLEQPtggevkvGPTVSLSYVDQNRQGLAGdktvwEVVSDGL-D-HLMVGKVEMPSRAYIAAFGFKGPDQQKPTKVL 443
                 7899*************9999.566666766666566677777777555443222223355555.3.55555555566667777777777777788888 PP

      AAA_16 112 agaeasrllellkrll 127
                 +g e++rl+ +l+  +
  KIR63378.1 444 SGGERNRLNLALTLKI 459
                 8888888888877655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0033       1.6     102     122 ..      34      54 ..      16     105 .. 0.82
   2 !   11.9   0.1   0.00031      0.16      90     127 ..     337     375 ..     321     381 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0033
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                  + +vG+ G+GKS+L++ +++ 
   KIR63378.1  34 IGVVGPNGAGKSSLLKIMAGL 54 
                  5689***********998874 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00031
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallpelelkt 127
                  +++l+  l    ++ ++G+ GvGK+tL +++++ ++   
   KIR63378.1 337 IDNLSFSLPRnGIVGIIGPNGVGKTTLFKTIVGLEQPTG 375
                  566666676547888***************999755544 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0     0.001      0.52       1     103 [.      34     179 ..      34     185 .. 0.64
   2 !    8.5   0.2    0.0057       2.8       1      18 [.     350     367 ..     350     407 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.001
      AAA_18   1 IlltGtpGvGKttlakeL..........skrl.gf.................gvnlrdvakenglllevdpe.......aldeskrldedkldklldal 64 
                 I++ G+ G+GK++l k            ++++ g+                   n+ + ++e  + le++++       ++++++ +++    kl+++l
  KIR63378.1  34 IGVVGPNGAGKSSLLKIMagldrpsngeARLMpGYtvgllaqepplndaktvLGNVEEAVAEIKSKLERFNKiaeqmatDYSDELMEEM---GKLQEEL 129
                 89****************66666665555555555999999977777777777777777777777777777777776333333333333...4444444 PP

      AAA_18  65 eenss.aleegknlvidghlaeleseaakdikk..........vvLtasp 103
                 +++++ + ++   l +d +++ + +++ +++ +            L+a++
  KIR63378.1 130 DAADAwDIDSKLELAMDALRCPPPDADVTQLSGgerrrvalckLLLEAPD 179
                 44433334566666888888877777777666666666555555555555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0057
      AAA_18   1 IlltGtpGvGKttlakeL 18 
                 +++ G+ GvGKttl k +
  KIR63378.1 350 VGIIGPNGVGKTTLFKTI 367
                 689***********8866 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0054       2.7      10      71 ..      36     107 ..      32     213 .. 0.74
   2 !   11.3   0.1   0.00064      0.32       6      27 ..     348     369 ..     345     407 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0054
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee...erpevv..fvtlpsstsskdllrellralglelka.......e 71 
                 v+G+ G+GK+ ll+ ++  +   +   e   ++  +v  + + p +++ k++l ++ +a+ + +++       +
  KIR63378.1  36 VVGPNGAGKSSLLKIMAGLDRPSNG--EarlMPGYTVglLAQEPPLNDAKTVLGNVEEAVAEIKSKlerfnkiA 107
                 89***********999887643333..23463333334566666666777777777777776666644444441 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00064
      AAA_22   6 gilvvtGesGtGKTtllrrlle 27 
                 gi+ ++G+ G+GKTtl ++++ 
  KIR63378.1 348 GIVGIIGPNGVGKTTLFKTIVG 369
                 78889************99875 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00037      0.18      12      37 ..      23      49 ..      19      53 .. 0.74
   2 ?   -1.3   0.3       5.2   2.6e+03     178     192 ..      96     110 ..      75     144 .. 0.50
   3 ?   -1.9   0.3       7.9   3.9e+03      87     109 ..     263     285 ..     231     310 .. 0.49
   4 !   18.7   1.2   3.9e-06    0.0019      12      39 ..     339     367 ..     329     369 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00037
      AAA_23 12 dqeidFskg.ltlItGpNGaGKTTild 37
                +++++F +g    ++GpNGaGK+++l 
  KIR63378.1 23 NVTLNFLPGaKIGVVGPNGAGKSSLLK 49
                666777443234789**********96 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 5.2
      AAA_23 178 ekekekeleeleeel 192
                 +k+k ++++++ e++
  KIR63378.1  96 IKSKLERFNKIAEQM 110
                 222222222222222 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 7.9
      AAA_23  87 trsiererelskkkgkttkkakl 109
                 ++++++e e+ ++++k ++ + +
  KIR63378.1 263 KKRLSEELEWVRSNAKARQTKSK 285
                 23333333333333333333322 PP

  == domain 4  score: 18.7 bits;  conditional E-value: 3.9e-06
      AAA_23  12 dqeidF.skgltlItGpNGaGKTTildAi 39 
                 + ++ +  +g++ I+GpNG GKTT++  i
  KIR63378.1 339 NLSFSLpRNGIVGIIGPNGVGKTTLFKTI 367
                 555556889****************9765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1    0.0035       1.7       3      22 ..      32      51 ..      30      60 .. 0.86
   2 !    9.7   0.2    0.0013      0.62       5      22 ..     350     367 ..     346     378 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0035
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                +ki ++Gp+g+GK++l+k +
  KIR63378.1 32 AKIGVVGPNGAGKSSLLKIM 51
                79**************9987 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0013
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 + i+Gp+g+GKTtl k++
  KIR63378.1 350 VGIIGPNGVGKTTLFKTI 367
                 679***********9997 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1    0.0024       1.2      28      43 ..      36      51 ..      21      59 .. 0.85
   2 ?    1.1   0.0       0.5   2.5e+02     237     336 ..      91     190 ..      58     218 .. 0.71
   3 !    6.9   0.2    0.0087       4.3      25      43 ..     349     367 ..     335     374 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0024
      AAA_15 28 liGkNnsGKSsileal 43
                ++G+N++GKSs+l+++
  KIR63378.1 36 VVGPNGAGKSSLLKIM 51
                8************997 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.5
      AAA_15 237 elteklkeiqeklkeidkklaeelkkilkkkidkik.kfnykgkkneeieik........ddeelplnknGsGvqrllllillileaekkdekeeknvi 326
                 e   ++k+ +e +++i +++a++++++l + + k++  + +  +++   +++           + ++++ + G +r + l  l+lea +          
  KIR63378.1  91 EAVAEIKSKLERFNKIAEQMATDYSDELMEEMGKLQeELDAADAWDIDSKLElamdalrcPPPDADVTQLSGGERRRVALCKLLLEAPDL--------- 180
                 455566777777777777777788877777777776455555555555555577777777666666777777777777766666666555......... PP

      AAA_15 327 lliEEPEahL 336
                 ll++EP +hL
  KIR63378.1 181 LLLDEPTNHL 190
                 7777777776 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0087
      AAA_15  25 ltvliGkNnsGKSsileal 43 
                 +  +iG+N++GK+++ + +
  KIR63378.1 349 IVGIIGPNGVGKTTLFKTI 367
                 5669**********98877 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0087       4.4      23      54 ..      36      75 ..      30     145 .. 0.75
   2 !    8.9   0.1    0.0023       1.2      20      50 ..     349     379 ..     343     397 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0087
      AAA_30 23 ltGpAGtGKttalkalreaweaa.g.......grviglAp 54
                ++Gp G+GK+ +lk ++ + + + g       ++v +lA 
  KIR63378.1 36 VVGPNGAGKSSLLKIMAGLDRPSnGearlmpgYTVGLLAQ 75
                79*************9999988855777777777777774 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0023
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrvi 50 
                 ++ + Gp G GKtt+ k+++ + +  gg+v 
  KIR63378.1 349 IVGIIGPNGVGKTTLFKTIVGLEQPTGGEVK 379
                 77899**************999988887775 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.016       8.1       1      18 [.      33      50 ..      33      63 .. 0.88
   2 !    9.1   0.1    0.0029       1.5       4      28 ..     352     376 ..     350     405 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.016
                EEEEESSTTSSHHHHHHC CS
         Roc  1 KvvlvGdsgvGKtsllkr 18
                K+ +vG +g+GK+sllk 
  KIR63378.1 33 KIGVVGPNGAGKSSLLKI 50
                899************985 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0029
                 EESSTTSSHHHHHHCHCT-CCC-EE CS
         Roc   4 lvGdsgvGKtsllkrfvedkfseke 28 
                 ++G +gvGKt+l+k +v  +  +  
  KIR63378.1 352 IIGPNGVGKTTLFKTIVGLEQPTGG 376
                 8*************99876655444 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.016       8.1      62      82 ..     176     196 ..     152     203 .. 0.69
   2 ?    3.9   0.1      0.12        62      28      84 ..     438     481 ..     430     486 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.016
     SbcCD_C  62 palrlvfLDEAFsklDeesia 82 
                 +a++l++LDE  + lD+es++
  KIR63378.1 176 EAPDLLLLDEPTNHLDAESVQ 196
                 36899***********99876 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.12
     SbcCD_C  28 rssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatl 84 
                 + ++ lSGGe+ + + lal       ++          +++LDE  + lD e++++l
  KIR63378.1 438 KPTKVLSGGER-NRLNLAL----TLKIGG--------NVILLDEPTNDLDVETLSSL 481
                 56666777777.3333332....223333........46777777777777777665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.072        36       3      19 ..      36      52 ..      34      76 .. 0.92
   2 !   10.1   0.1    0.0016      0.81       3      20 ..     352     369 ..     350     404 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.072
                EESSTTSSHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakava 19
                ++Gp G GK++l k +a
  KIR63378.1 36 VVGPNGAGKSSLLKIMA 52
                79***********9988 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0016
                 EESSTTSSHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavak 20 
                 ++Gp G+GKT+l k ++ 
  KIR63378.1 352 IIGPNGVGKTTLFKTIVG 369
                 78***********99875 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.28   1.4e+02      25      40 ..      36      51 ..      30      60 .. 0.86
   2 ?   10.3   0.1   0.00095      0.47      20      42 ..     347     369 ..     340     379 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.28
    ATPase_2 25 iYGpegsGKtaLlkei 40
                + Gp g GK++Llk +
  KIR63378.1 36 VVGPNGAGKSSLLKIM 51
                67***********965 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00095
    ATPase_2  20 neiyfiYGpegsGKtaLlkeiie 42 
                 n i+ i Gp g+GKt+L+k i+ 
  KIR63378.1 347 NGIVGIIGPNGVGKTTLFKTIVG 369
                 5688899*************996 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2      0.47   2.3e+02      23      38 ..      34      49 ..      25      53 .. 0.88
   2 ?   13.0   0.0   8.7e-05     0.044      21      42 ..     348     369 ..     334     394 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.47
                EEEEESTTSSHHHHHH CS
      NB-ARC 23 valvGmgGvGKttlak 38
                +++vG  G GK+ l+k
  KIR63378.1 34 IGVVGPNGAGKSSLLK 49
                89**********9986 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 8.7e-05
                 EEEEEEESTTSSHHHHHHHHCC CS
      NB-ARC  21 lvvalvGmgGvGKttlakqiln 42 
                  +v++ G  GvGKttl+k i+ 
  KIR63378.1 348 GIVGIIGPNGVGKTTLFKTIVG 369
                 59****************9985 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.84   4.2e+02       6      22 ..      35      51 ..      32      59 .. 0.85
   2 ?   10.1   0.1    0.0012       0.6       2      23 ..     347     368 ..     346     402 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.84
      AAA_14  6 vitGaRrvGKTtllkql 22
                 ++G+  +GK+ llk +
  KIR63378.1 35 GVVGPNGAGKSSLLKIM 51
                689**********9865 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0012
      AAA_14   2 rkilvitGaRrvGKTtllkqli 23 
                 + i+ i G+  vGKTtl k+++
  KIR63378.1 347 NGIVGIIGPNGVGKTTLFKTIV 368
                 67999************99987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.085        42       5      19 ..      36      50 ..      33      63 .. 0.84
   2 ?    8.8   0.4    0.0029       1.4       4      21 ..     351     368 ..     349     379 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.085
                EEC-TTTCHHHHHHH CS
       NACHT  5 lqGeaGsGKTtLlqk 19
                + G++G GK+ Ll+ 
  KIR63378.1 36 VVGPNGAGKSSLLKI 50
                79**********974 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0029
                 EEEC-TTTCHHHHHHHHH CS
       NACHT   4 ilqGeaGsGKTtLlqkla 21 
                  + G++G+GKTtL + ++
  KIR63378.1 351 GIIGPNGVGKTTLFKTIV 368
                 589***********9997 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.038        19       3      20 ..      34      51 ..      32      63 .. 0.83
   2 ?    6.9   0.5    0.0084       4.2       3      24 ..     350     373 ..     348     380 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.038
                EEEEESTTCCHHHHHHHH CS
        cobW  3 tvltGflGsGKTtLlnhl 20
                ++++G+ G+GK++Ll+ +
  KIR63378.1 34 IGVVGPNGAGKSSLLKIM 51
                6799***********866 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0084
                 EEEEESTTCCHHHHHHHHH..CT- CS
        cobW   3 tvltGflGsGKTtLlnhll..enr 24 
                 +++ G+ G GKTtL ++++  e+ 
  KIR63378.1 350 VGIIGPNGVGKTTLFKTIVglEQP 373
                 6799*************9965554 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0011      0.55       1      71 [.      34     109 ..      34     216 .. 0.64
   2 ?    3.1   0.1      0.18        89       1      45 [.     350     393 ..     350     413 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0011
                 EEEEEBTTTTHHHHHHHHHTS--S---SS.S---S-EEEEECCT---C....CS...SSEEEET-EB--CHHHHHH CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpn.ptTrrplelqlgeeeeas....eravkeelkekekkledfsevree 71 
                 i vvG   +GKSS+l  + g d   +g+  ++   ++ l  +e +        ++v+e + e ++kle f++++e+
  KIR63378.1  34 IGVVGPNGAGKSSLLKIMAGLDRPSNGEArLMPGYTVGLLAQEPPLNDaktvLGNVEEAVAEIKSKLERFNKIAEQ 109
                 79**************999988444444324444444444433333223333333444444445555555555555 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.18
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT-- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeee 45 
                 + ++G    GK+++   ++g +  p+g ++    ++ l++ ++++
  KIR63378.1 350 VGIIGPNGVGKTTLFKTIVGLE-QPTGGEVKVGPTVSLSYVDQNR 393
                 679999***************9.9999888888888888877665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.065        32       4      17 ..      36      49 ..      34      55 .. 0.86
   2 ?    9.6   0.0    0.0019      0.95       4      33 ..     352     414 ..     349     506 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.065
      AAA_33  4 lvGlpGsGKstlae 17
                +vG++G+GKs l++
  KIR63378.1 36 VVGPNGAGKSSLLK 49
                79********9987 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0019
      AAA_33   4 lvGlpGsGKstlaerl...lkklgavllssdt..............................l 33 
                 ++G++G+GK+tl + +    +++g+++   +t                              +
  KIR63378.1 352 IIGPNGVGKTTLFKTIvglEQPTGGEVKVGPTvslsyvdqnrqglagdktvwevvsdgldhlM 414
                 79***********99733223333444333333333344444444444444444444444440 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.24   1.2e+02      26      54 ..      32      60 ..      24      64 .. 0.84
   2 ?    7.9   0.0    0.0023       1.2      21      54 ..     343     376 ..     338     405 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.24
        DLIC 26 ksvlvlGedgsGkttliaklqGveeekkG 54
                 ++ v+G +g+Gk++l+  + G++ +  G
  KIR63378.1 32 AKIGVVGPNGAGKSSLLKIMAGLDRPSNG 60
                457899****************9998887 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0023
        DLIC  21 klPsgksvlvlGedgsGkttliaklqGveeekkG 54 
                  lP +  v ++G +g Gkttl   + G+e++  G
  KIR63378.1 343 SLPRNGIVGIIGPNGVGKTTLFKTIVGLEQPTGG 376
                 58999999*********************98776 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0     0.005       2.5      31      46 ..      36      51 ..      22      54 .. 0.84
   2 ?    6.7   0.0      0.01         5      18      47 ..     339     368 ..     330     371 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.005
      AAA_27 31 iyGpNEAGKstalrAi 46
                ++GpN AGKs++l+ +
  KIR63378.1 36 VVGPNGAGKSSLLKIM 51
                89*********99865 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.01
      AAA_27  18 sldfsaeeadlhliyGpNEAGKstalrAis 47 
                 +l+fs  ++++  i+GpN  GK+t+++ i 
  KIR63378.1 339 NLSFSLPRNGIVGIIGPNGVGKTTLFKTIV 368
                 5788888999999************99886 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1      0.08        40       3      18 ..      36      51 ..      34      60 .. 0.87
   2 ?    6.4   0.1     0.024        12       3      18 ..     352     367 ..     350     387 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.08
  RNA_helicase  3 lyGpsgeGKStlakeL 18
                  ++Gp+g GKS+l k +
    KIR63378.1 36 VVGPNGAGKSSLLKIM 51
                  79**********9985 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.024
  RNA_helicase   3 lyGpsgeGKStlakeL 18 
                   + Gp+g+GK+tl k++
    KIR63378.1 352 IIGPNGVGKTTLFKTI 367
                   78**********9985 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.44   2.2e+02       2      23 ..      33      54 ..      32      70 .. 0.89
   2 ?    8.3   0.1    0.0032       1.6       3      28 ..     350     375 ..     349     390 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.44
                EEEEEESTTSSHHHHHHHHHTT CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltga 23
                ++ +vG   +Gk++l+  ++g 
  KIR63378.1 33 KIGVVGPNGAGKSSLLKIMAGL 54
                6889************999986 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0032
                 EEEEESTTSSHHHHHHHHHTTSEEEE CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvg 28 
                 v ++G   vGkttlf ++ g +q  g
  KIR63378.1 350 VGIIGPNGVGKTTLFKTIVGLEQPTG 375
                 56899999************999776 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.16        78       1      16 [.      36      51 ..      36      58 .. 0.88
   2 ?    6.2   0.2     0.015       7.7       1      21 [.     352     372 ..     352     380 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.16
  ATP_bind_1  1 vvGpaGsGKttfvgal 16
                vvGp G+GK+++ + +
  KIR63378.1 36 VVGPNGAGKSSLLKIM 51
                89*********98765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.015
  ATP_bind_1   1 vvGpaGsGKttfvgalseile 21 
                 ++Gp G+GKtt+ ++++ + +
  KIR63378.1 352 IIGPNGVGKTTLFKTIVGLEQ 372
                 79**********999876655 PP

>> ISG65-75  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   0.00027      0.13      56     119 ..      79     144 ..      74     150 .. 0.85
   2 ?    0.4   0.3      0.63   3.1e+02      78     135 ..     243     300 ..     201     304 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00027
    ISG65-75  56 lketkdklayienakekvdyyvekleslleeake.kgtltesdaeklkkaceeAka.knkkareka 119
                 l+++k  l+++e+a+++++ ++e+++++ e++ + +++  ++++ kl++++++A a +++++ e a
  KIR63378.1  79 LNDAKTVLGNVEEAVAEIKSKLERFNKIAEQMATdYSDELMEEMGKLQEELDAADAwDIDSKLELA 144
                 67888999**********************998857788899999*********997777777666 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.63
    ISG65-75  78 ekleslleeakekgtltesdaeklkkaceeAkaknkkarekakkalekaekaskkake 135
                 + le+  ++   +g  +++ +++l +++e +   +k++++k+k+ l+ + + + +a +
  KIR63378.1 243 TYLEKKAARLSVEGRRDAKMKKRLSEELEWVRSNAKARQTKSKARLDRYDEMAAEAEK 300
                 5555555555556677777777777777777777777777777777777777776655 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.058        29      18      48 ..      20      50 ..       1      76 [. 0.78
   2 ?    5.0   0.2     0.021        10      18      50 ..     336     368 ..     320     386 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.058
                HHHHHGGG-S-SEEEEEEE-TTSSHHHHHHH CS
        MeaB 18 llerllakaGraqvvGltGvPGaGkstlvea 48
                +l++++ +     ++G+ G  GaGks l++ 
  KIR63378.1 20 VLDNVTLNFLPGAKIGVVGPNGAGKSSLLKI 50
                55556556666679*************9865 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.021
                 HHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB  18 llerllakaGraqvvGltGvPGaGkstlvealg 50 
                 l+++l+ +  r   vG+ G  G+Gk tl + ++
  KIR63378.1 336 LIDNLSFSLPRNGIVGIIGPNGVGKTTLFKTIV 368
                 66777777788999*************998765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.059        29       2      20 ..      34      52 ..      33      75 .. 0.81
   2 ?    6.4   0.1      0.02        10       4      19 ..     352     367 ..     349     404 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.059
      AAA_28  2 ivitGgestGKTtlleaLa 20
                i ++G+ ++GK++ll+ +a
  KIR63378.1 34 IGVVGPNGAGKSSLLKIMA 52
                7789***********9988 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.02
      AAA_28   4 itGgestGKTtlleaL 19 
                 i+G+ + GKTtl + +
  KIR63378.1 352 IIGPNGVGKTTLFKTI 367
                 9***********9876 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.93   4.6e+02       2      18 ..      34      50 ..      33      58 .. 0.83
   2 ?    8.6   1.0    0.0033       1.6       2      22 ..     350     370 ..     349     384 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.93
                EEEE--TTSSHHHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlvkk 18
                + + Gp G GK+ l+k 
  KIR63378.1 34 IGVVGPNGAGKSSLLKI 50
                7899********99864 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0033
                 EEEE--TTSSHHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlel 22 
                 v i Gp GvGKtTl+k ++ l
  KIR63378.1 350 VGIIGPNGVGKTTLFKTIVGL 370
                 5688************99865 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.3      0.18        88      29      50 ..      28      48 ..      20     161 .. 0.76
   2 ?   -2.0   0.0       4.6   2.3e+03     162     188 ..     188     214 ..     178     216 .. 0.72
   3 ?    5.2   0.0     0.029        14      30      49 ..     344     363 ..     334     368 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.18
      AAA_25 29 llpagelallaGapgtGKttla 50
                +lp g+ + ++G+ g+GK+ l+
  KIR63378.1 28 FLP-GAKIGVVGPNGAGKSSLL 48
                554.777788999999999886 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.6
      AAA_25 162 nsdvgalvealeriarrtgaavllvhH 188
                 n+  ++ v++le+  +++  +vl++ H
  KIR63378.1 188 NHLDAESVQWLEQHLAKYAGTVLAITH 214
                 444456677888888888888888888 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.029
      AAA_25  30 lpagelallaGapgtGKttl 49 
                 lp+++++ ++G+ g+GKttl
  KIR63378.1 344 LPRNGIVGIIGPNGVGKTTL 363
                 79999999***********8 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.062        31      23      41 ..      38      56 ..      35      65 .. 0.84
   2 ?   -0.7   0.0      0.82   4.1e+02     388     464 ..      89     111 ..      75     173 .. 0.51
   3 ?   -0.8   0.1      0.88   4.4e+02     159     430 ..     259     285 ..     203     312 .. 0.52
   4 ?    3.2   0.1     0.056        28      21      41 ..     352     372 ..     349     386 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.062
      AAA_13 23 GwNGaGKTtLSrllrslel 41
                G NGaGK++L ++++ l +
  KIR63378.1 38 GPNGAGKSSLLKIMAGLDR 56
                99***********999965 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.82
      AAA_13 388 leeekeeakkklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeein 464
                 +ee+++e+k+kle+                                                       +++ae+++
  KIR63378.1  89 VEEAVAEIKSKLER------------------------------------------------------FNKIAEQMA 111
                 23333333333333......................................................222222222 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.88
      AAA_13 159 eekfkerllkelkkknrkaaellsdeelkakletvesenlpelaplslssidldalekaeilkkkvvgkdseieeLienldladWVkqGlelheassdt 257
                 ++k k+rl +el+                                                                                      
  KIR63378.1 259 DAKMKKRLSEELEWV------------------------------------------------------------------------------------ 273
                 222222222222222.................................................................................... PP

      AAA_13 258 CpFCgqplpaerkaaLeahFddefeekqerLekliekveskkselleklkavsdeasensafeedkeelkaeaealeeqLkglqraleaKrkepfksve 356
                                                                                                                    
  KIR63378.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

      AAA_13 357 lesvkakiesikklvaeineliakhNekvanleeekeeakkklelhlveeleseldeykkkykklekaieklek 430
                                                                               ++ +ka +   k
  KIR63378.1 274 --------------------------------------------------------------RSNAKARQTKSK 285
                 ..............................................................221111111111 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.056
      AAA_13  21 iYGwNGaGKTtLSrllrslel 41 
                 i G NG GKTtL + +  le+
  KIR63378.1 352 IIGPNGVGKTTLFKTIVGLEQ 372
                 669*********999988864 PP

>> MRP-L46  39S mitochondrial ribosomal protein L46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.1   0.00078      0.39      23      91 ..     238     301 ..     236     317 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00078
                 HHHH....HHHHHHHHHHT----HHHHTTHHHHHHHHHHH---------.....----HHHHHHHHHHH CS
     MRP-L46  23 EkefYkYqkellerlelefskyfyfkkgtlaelkfkelkkklterdeevardigkpdlrqererndeqe 91 
                 E ++  Y ++   rl+ e +++   kk+  +el++ ++++k ++ ++++     + d ++e++ + e++
  KIR63378.1 238 EGNYSTYLEKKAARLSVEGRRDAKMKKRLSEELEWVRSNAKARQTKSKA-----RLDRYDEMAAEAEKT 301
                 55677899999************************99999888887544.....444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       915  (0.0510346); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                       131  (0.0073066); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 3755.95
//
Query:       KIR63379.1  [L=151]
Description: thioesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-11   44.4   0.0    2.8e-11   44.0   0.0    1.1  1  4HBT_2       Thioesterase-like superfamily
    1.6e-09   38.0   0.7    1.4e-07   31.8   0.7    2.2  1  4HBT         Thioesterase superfamily
      8e-07   28.6   0.0     0.0017   17.7   0.0    2.1  2  Acyl-ACP_TE  Acyl-ACP thioesterase


Domain annotation for each model (and alignments):
>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   4.7e-15   2.8e-11       2     109 ..      12     125 ..      11     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 4.7e-15
      4HBT_2   2 rpndvDlnghlnnarylryleearvkflertglksrsiarrgiglilssahvryrrplk.fpdrl........tvefrvididaktliiehrflsnadg 91 
                 r+ d+D++gh+nn+r+l  +eearv ++   g k + +     g+++++++v+y rp+     r         ++e+ v +i a+++ +++++++   +
  KIR63379.1  12 RWSDLDAYGHINNSRFLTLYEEARVALMF-AGGKAWGVGSFADGVVIRRHEVDYLRPVDyALGRAtaeaaptvRIELWVEEIRASRFTVAYELYD--GD 107
                 8***************************5.4445777776677*************8775444544666664466677799**************..88 PP

      4HBT_2  92 kkaarveerivvmdygkr 109
                  +a +++ ++v +d   +
  KIR63379.1 108 TLASTARSVLVPFDLAAQ 125
                 8899***99999998664 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.7   2.3e-11   1.4e-07       1      75 [.      19     108 ..      19     111 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 2.3e-11
                 TSSB-HHHHHHHHHHHHHHHHHHTTST......TEEEEEEEEEEEESS-BBT.........TCEEEEEEEEEEEESSEEEEEEEEEETTS CS
        4HBT   1 gGvvhgGvylallDeaagaalrslggr......gilvvvvelsidflrpvrl.........gdeltvearvlrlgrtsavvevevrdedg 75 
                 +G++++ ++l+l +ea+ a+++  g++        +vv+++ ++d+lrpv +           ++++e +v+++  ++++v +e++d+d 
  KIR63379.1  19 YGHINNSRFLTLYEEARVALMFAGGKAwgvgsfADGVVIRRHEVDYLRPVDYalgrataeaAPTVRIELWVEEIRASRFTVAYELYDGDT 108
                 6*************************************************65333333222239999********************996 PP

>> Acyl-ACP_TE  Acyl-ACP thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.9e-07    0.0017     159     183 ..       9      33 ..       2      39 .. 0.85
   2 !    9.1   0.0   0.00012      0.74      72     129 ..      80     136 ..      55     143 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.9e-07
  Acyl-ACP_TE 159 lkvrysDlDlnqHvNNvkYlewile 183
                   + r+sDlD ++H+NN+++l   +e
   KIR63379.1   9 CTLRWSDLDAYGHINNSRFLTLYEE 33 
                  678****************987666 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00012
  Acyl-ACP_TE  72 gdkveietwaesenklfcyrdfkvrdekgekiieaksvfvlmdqetrrlsrvtdeila 129
                  + +v+ie w+e ++       ++++d       +a sv v  d   +r+ r+tde +a
   KIR63379.1  80 APTVRIELWVEEIRASRFTVAYELYD-GDTLASTARSVLVPFDLAAQRPRRITDEERA 136
                  5689***********999********.333566899*******************877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1133.74
//
Query:       KIR63380.1  [L=194]
Description: hypothetical protein TK50_21380 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-18   65.6   0.2    5.6e-18   65.2   0.2    1.1  1  YbjN      Putative bacterial sensory transduction regulator


Domain annotation for each model (and alignments):
>> YbjN  Putative bacterial sensory transduction regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.2   3.1e-22   5.6e-18       3     126 ..      63     188 ..      61     189 .. 0.91

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 3.1e-22
                 HHHHHHHHHH--S-EEEEETTEE.EEEEEETTEEEEEEE--SSTT-EEEEEEEEES-.-TTHHHHHHHHHHHTTTTTTT-EEE.EETTEEE....EEEE CS
        YbjN   3 dlleevLeeagleyertedddgaivvvgtwggyrftiallgeseelllvlafvarvp.eedreallellnrwNrellfgkayl.dedgdvl....vehd 95 
                  +++ +L+ ++++  +  d dg+  + ++w++++++++l g ++e+l ++a+++    +++ + +++ +n+wN++++f kay+ d    +     +e +
  KIR63380.1  63 RRVCDALDLLDVR--YLADGDGN--LLAMWERHAVLVTLEGPEDEILVMRARPHATVpPDWADRAYRVVNEWNHTRRFCKAYIgDPTERGQlpiyAELQ 157
                 5788888888888..********..***********************8887776666*************************776666668999**** PP

                 EE-.TT--HHHHHHHHHHHHHHHHHHHHHHH CS
        YbjN  96 ldldagltpeqldrllalvleaadqffdalq 126
                 ++l+ag+ ++ l ++l+++++ a +f d+l+
  KIR63380.1 158 VPLGAGAHDALLVEMLDCGAAVATTFVDWLH 188
                 *****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1362.35
//
Query:       KIR63381.1  [L=136]
Description: globin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-36  122.9   0.0    8.6e-36  122.7   0.0    1.0  1  Bac_globin  Bacterial-like globin


Domain annotation for each model (and alignments):
>> Bac_globin  Bacterial-like globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.7   0.0   4.8e-40   8.6e-36       1     117 [.      12     126 ..      12     130 .. 0.95

  Alignments for each domain:
  == domain 1  score: 122.7 bits;  conditional E-value: 4.8e-40
                 -HHHHHTHHHHHHHHHHHHHHHHHT-CCCCCCGGGTTSSHHHHHHHHHHHHHHHTTSSSHHHHHHSS-.HHHHHTTS--BHHHHHHHHHHHHHHHHHCT CS
  Bac_globin   1 tlydaiGgeatveelvdrfYervdedeeealseifsgtdlegsreklveFlvqalgGPelYverrGhPrlrkrHapfeitaaerdawlkhlaeAleetg 99 
                 tl++a+Gge+t+++lvd+fY+ v++d+   l+++++ +dl  + ++l  Fl+q++gGP++Y+ +rGhPrlr+rHapf+i+aaerdawl+h+++A++  +
  KIR63381.1  12 TLFEAVGGEPTFRKLVDEFYAGVATDPL--LRPMYPEADLGPAADRLTLFLMQYWGGPNTYSAQRGHPRLRMRHAPFRIGAAERDAWLHHMRRAVDRLD 108
                 79**************************..********************************************************************* PP

                 --HHHHHHHHHHHHHHHH CS
  Bac_globin 100 vssedreeklellealah 117
                  + e  ++ ++ le+ a 
  KIR63381.1 109 LPPEIATALWDYLERAAY 126
                 999999999988887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       193  (0.0107647); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1052.21
//
Query:       KIR63382.1  [L=463]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-15   57.4  49.6    1.5e-11   43.9  28.4    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9  28.4   8.1e-16   1.5e-11       2     297 ..      31     319 ..      30     329 .. 0.78
   2 !   18.8  15.0   3.4e-08    0.0006      87     174 ..     324     411 ..     316     441 .. 0.83

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 8.1e-16
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlga 99 
                 + a +ls ++ +i+ +a++ ++ ++ + s+     ++++ +l  +++ ++l+ l++r+  r+v++++ l+  + ++l +++ +  wl+l l + + l+ 
  KIR63382.1  31 FTASALSWIGDFIAKAAVTVLVYRETQ-SVGYSAAAFAVSFLPWLIGGPLLATLAERYRYRSVMVACDLIRMALMVLVALPgNEPWLILCLLFATTLAN 128
                 677788888888888888874445544.6666666777788888**************9999*****99999994555555455567777788888888 PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                   + +a  al+  + ++++   +++l s++ +++ +lg+l+g++la ++  +++ +++a+ ++l++ l+  + ++++p+  +++++        ++  +
  KIR63382.1 129 PPSQAARSALMPLILTGDRLVVGLSLNSSTGQAAQVLGYLIGAALA-AFDPTLALLVNAATFALSAALV-RFGVQDRPPAMTSAHRSH----LLRETGD 221
                 **********************************************.******************8863.555666666666666666....6777777 PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllplylqevlgls......glllaglllallalvgailallagrlsdr.lgrrrrlllallllllaalg 290
                 ++++++  pvl     a++l   + ++l++ +p        ++      g + +g++ a++++++ ++++l+g l+ r + + rrl+l+ +l++la l 
  KIR63382.1 222 GFRIVFGTPVLR----AIALLV-FSAMLFSIVPE--GLAAAWAregvddG-MDSGVAQAVIMAANPVGFILGGLLVSRaVAPARRLVLIRPLAVLAPLV 312
                 9********663....333331.22334455555..55555555555566.8899889999999988899******777999***************99 PP

       MFS_1 291 lallavt 297
                 l++  + 
  KIR63382.1 313 LVPSLLD 319
                 9988777 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 3.4e-08
       MFS_1  87 lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpe 174
                 ++++l  l+G++ ++l+p+++ l+++  p   r+ra+g++++g+++   l+ l+ glla+ +  ++v     ++++++++l ++  p+
  KIR63382.1 324 VVALLAGLCGFAVAGLLPVANGLFVRALPNGYRARAFGVMATGVQVIQGLAVLATGLLAERFPIPVVVGGWSAAGVVLMLLTAAAWPT 411
                 4556666********************************************************9999888888888887765555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3261.11
//
Query:       KIR63383.1  [L=355]
Description: mechanosensitive ion channel protein MscS [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-34  116.9   0.0      1e-33  116.7   0.0    1.1  1  MS_channel       Mechanosensitive ion channel
  ------ inclusion threshold ------
      0.019   15.0   0.5      0.058   13.5   0.5    1.8  1  Phage_holin_3_3  LydA holin phage, holin superfamily III
      0.032   14.1   0.6       0.89    9.4   0.3    2.6  2  SH3_4            Bacterial SH3 domain
        1.2    9.6   7.7        8.8    6.8   7.1    2.6  1  CopD             Copper resistance protein D


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.0   2.3e-37     1e-33       3     205 ..     130     327 ..     128     328 .. 0.94

  Alignments for each domain:
  == domain 1  score: 116.7 bits;  conditional E-value: 2.3e-37
                 HHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESSSEEEEEEEE-SSEEEEEETTSEEEEEEHHHH CS
  MS_channel   3 ilkiliivvgilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveigdieGtVediglrttkirtfdgrivtiPnssl 101
                 +++  ++ +++l++l ++ ++++ lla++G++g+alg+++++l+++l+aG+++l+e+++ +GD+v++g+++G Ve++glr+t++r+  g + +i n ++
  KIR63383.1 130 MVTAFVFGIALLMILREFSFDLAPLLASAGIAGVALGFGAQSLVKDLIAGLFMLVEDQYGVGDTVDLGEATGVVESVGLRVTTVRDGRGVLWYIRNGEI 228
                 56778999******************************************************************************************* PP

                 HTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-T.TS-EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHHHHHH CS
  MS_channel 102 vtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlk.dkellvvldefgdsslnfevrvfvktvvpeeylsvqseinlrikkil 199
                 v   + N s+  g+  ++v+  + ++   +++  vl++ + ++  +p++ + + e + vl+  + +     +r +vkt   + +++v +e+++r  ++l
  KIR63383.1 229 V--RVGNKSQ--GWALVVVDLPIGFAGT-EEATAVLRTAAASVALDPDLAPeIVEQPDVLGVEQMTVDGAVIRTVVKT-TADGQFAVGRELRRRLAEAL 321
                 *..*******..9999999988888888.77*****************998556778899999999999*********.8******************* PP

                 HHHT-- CS
  MS_channel 200 eeegie 205
                 e  gi 
  KIR63383.1 322 ENSGIT 327
                 **9995 PP

>> Phage_holin_3_3  LydA holin phage, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.5   1.3e-05     0.058      20      69 ..     115     164 ..     110     173 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.3e-05
  Phage_holin_3_3  20 kkgrrrfsikellleivvSgfvGllvfllceelglsqlltlaiaglsGyl 69 
                      ++++r + i ++l ++v++ + G+ + +++ e++++    la ag++G++
       KIR63383.1 115 RRRQRAEAIGSVLRSMVTAFVFGIALLMILREFSFDLAPLLASAGIAGVA 164
                      44568899999*************************************86 PP

>> SH3_4  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3    0.0002      0.89      17      40 ..     219     242 ..     205     244 .. 0.89
   2 ?    1.9   0.0     0.046     2e+02      14      28 ..     327     342 ..     322     348 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0002
       SH3_4  17 viayleaGvpvrvvackgnWcrvr 40 
                 v++y+++G +vrv+++ ++W  v+
  KIR63383.1 219 VLWYIRNGEIVRVGNKSQGWALVV 242
                 78******************8875 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.046
       SH3_4  14 kaavi.ayleaGvpvr 28 
                 +a+++ a+l +Gvp+r
  KIR63383.1 327 TAKIAaARLYPGVPLR 342
                 689999********98 PP

>> CopD  Copper resistance protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   7.1     0.002       8.8      32      81 ..      42      94 ..       5     145 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.002
        CopD 32 lagllttayGrlllaKlalllvllalaalnrf...rlvprleaatgaggqalr 81
                 ++++ +    ++l+K + +l++lala l+r+   r+++rl + t++g ++l 
  KIR63383.1 42 SGSAWFAEGSYWILLKPLRVLLILALAFLARWalhRMIKRLVRTTADGVPTLL 94
                344444455579********************777555555333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2887.15
//
Query:       KIR63384.1  [L=254]
Description: hypothetical protein TK50_21400 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-10   38.5   0.2    1.6e-09   37.8   0.2    1.4  1  DUF4111        Domain of unknown function (DUF4111)
      3e-05   24.2   0.0    4.6e-05   23.6   0.0    1.4  1  NTP_transf_2   Nucleotidyltransferase domain
    0.00014   21.9   0.0    0.00029   20.9   0.0    1.6  1  Polbeta        Polymerase beta, Nucleotidyltransferase
  ------ inclusion threshold ------
      0.027   14.2   0.8      0.077   12.8   0.8    1.7  1  MdcG           Phosphoribosyl-dephospho-CoA transferase MdcG
       0.21   11.5   0.0        0.3   10.9   0.0    1.2  1  Adenyl_cycl_N  Adenylate cyclase NT domain


Domain annotation for each model (and alignments):
>> DUF4111  Domain of unknown function (DUF4111)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.2   4.5e-13   1.6e-09       2      95 ..     148     239 ..     147     247 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 4.5e-13
                 H-----HHHHHHHHHHHHHH-SSHHHH..-HHHHHHHHHHHHHHHHHS----HHHHHHHHGGGS-HHHHHHHHHHHHHHTTS----HHHHHHHHHH CS
     DUF4111   2 vldpvpradlvdailadveelleeiee..deryvvLtLaRvlatletgeilsKdeaaewalerlPeeyrpllaeArkaylgeeeeeleedkeelee 95 
                 v++pvp + +++  ++ + ++++ i++  +   +vLt +R++ +  +g   +K +aaewal+r P+     +++A+++y  e +  l  d++++++
  KIR63384.1 148 VIEPVPPQWIRERGRHWLTTWQSRIDDaeEAAFMVLTACRIWRFGVEGVHCAKTQAAEWALDRNPSL--TAVRQALRQYGAEPAAPL--DEDAIAQ 239
                 899***********************98777889*****************************9875..6799****9988444444..4444444 PP

>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.3e-08   4.6e-05      16      74 ..      30      87 ..      14     119 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.3e-08
                  EEEEEHHHHCTTSCTT.SSEEEEEEESTTCHHHHHHEHHHHHHHHCCCEEECTTEEEEEE CS
  NTP_transf_2 16 kvvlfGSyarGtalkg.SDiDllvvlpeevsrekkeegleklaeiikfleellglevdlv 74
                  +++l+GS a+G + +g SDiDll++++    + +  + le+l+++i+  e   g+  ++v
    KIR63384.1 30 SAILYGSLATGQFVSGhSDIDLLLITDGTLAD-TEVDALEALVRQIDLAEA-SGIDLHVV 87
                  689*************************9543.444455555555555555.55555555 PP

>> Polbeta  Polymerase beta, Nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     8e-08   0.00029      12      66 ..      27      84 ..      14     102 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 8e-08
                HHHSTTEEEEEE-S----.--EEEEEEEESS---HHHHHHHHHHHHHH...SSSEEEE CS
     Polbeta 12 eielaylFGSrakgkare.eSDiDlavllkekldleeelelaaeledi..klgkkvDl 66
                 ++ a+l+GS a+g++ + +SDiDl ++++ +l   e   l+a + +i  ++   +Dl
  KIR63384.1 27 RLRSAILYGSLATGQFVSgHSDIDLLLITDGTLADTEVDALEALVRQIdlAEASGIDL 84
                56789**********9866************944444444444444443323444444 PP

>> MdcG  Phosphoribosyl-dephospho-CoA transferase MdcG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.8   2.2e-05     0.077     120     169 ..      38      90 ..       4      93 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.2e-05
        MdcG 120 atglpylhesSDLDLlirvasalq...larlldllaaleaaa.vrlDgeielps 169
                 atg ++++ +SD+DLl+ ++  l+    ++l +l+++++ a+   +D+ +++++
  KIR63384.1  38 ATG-QFVSGHSDIDLLLITDGTLAdteVDALEALVRQIDLAEaSGIDLHVVTAD 90 
                 344.58999*********998765444788888889988885599*****9998 PP

>> Adenyl_cycl_N  Adenylate cyclase NT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.5e-05       0.3      90     155 ..      26      91 ..       5     106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.5e-05
  Adenyl_cycl_N  90 aaieglylmGStgsiaq.sekSDlDiWvchrselsaeelelLekKleliekwaeelgvevnfFlide 155
                    +++++  l GS+++  + s +SD+D+ ++++ +l ++e++ Le  +++i   ae  g+++++   d 
     KIR63384.1  26 PRLRSAILYGSLATGQFvSGHSDIDLLLITDGTLADTEVDALEALVRQID-LAEASGIDLHVVTADV 91 
                    567777788999996653679***********************999995.7999999999866655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1875.70
//
Query:       KIR63385.1  [L=295]
Description: peptidase C60 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-16   60.0   0.0    2.8e-16   59.5   0.0    1.2  1  Sortase   Sortase domain


Domain annotation for each model (and alignments):
>> Sortase  Sortase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   1.5e-20   2.8e-16       9     125 .]     157     290 ..     152     290 .. 0.80

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 1.5e-20
                 EEEEEE......S...CSSCHCTTSEEECSTT-BTTSSSEEEEEEE..BSSTTSTTGGGGGGHTT-EEEEEESSSEEEEEEEEEEEEEETTHG...GGG CS
     Sortase   9 nlpvle......g...tdeedlkagagfldesakpgeagnfvlaGH..rvgkgavFsdLkklekgdaivvetkkgksyvYrvfsveivtpdev...svl 93 
                 ++pv +      g   + + d +++ag++d+  +pg+ g +v++GH    +++avF++Lk+l+ gd++ v++++ + + ++v++v+   + ++   +v+
  KIR63385.1 157 DAPVHDvgiaadGsigVPDADRAQEAGWYDQGPTPGQYGPAVIVGHvdTRTGPAVFHELKELRSGDRVEVRRADHSVAIFEVDEVRRYAKARLpvdEVY 255
                 555555533333133355566667********9*************642799**********************************9999988777777 PP

                 SHHTTSEEEEEEEES.SSSS..S.TSEEEEEEEEEE CS
     Sortase  94 dptpgdaiLtLiTCt.pfds..e.nneRlivhAklv 125
                 ++   ++ L LiTC   +    + ++++++v+A+lv
  KIR63385.1 256 GDF-SRPGLRLITCGgAWVGgeTgYADNVVVYASLV 290
                 765.6899*******555449856*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2427.18
//
Query:       KIR63386.1  [L=144]
Description: AsnC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-18   66.3   1.6    2.5e-18   65.6   1.6    1.4  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    2.2e-17   62.3   0.0    3.5e-17   61.7   0.0    1.3  1  HTH_24          Winged helix-turn-helix DNA-binding
    9.8e-09   35.1   0.0    2.4e-08   33.8   0.0    1.6  2  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    9.8e-08   31.8   0.2    1.6e-07   31.1   0.2    1.4  1  MarR_2          MarR family
    5.7e-06   26.2   0.0    1.1e-05   25.3   0.0    1.4  1  MarR            MarR family
    5.6e-05   23.1   0.2    0.00011   22.2   0.2    1.4  1  HTH_20          Helix-turn-helix domain
     0.0022   18.1   0.3     0.0071   16.5   0.2    1.9  2  HTH_28          Helix-turn-helix domain
     0.0064   16.3   0.0      0.011   15.6   0.0    1.3  1  HTH_5           Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
      0.014   15.6   0.0      0.024   14.8   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.015   15.1   0.4      0.038   13.8   0.4    1.7  1  HTH_IclR        IclR helix-turn-helix domain
      0.026   14.5   0.1      0.058   13.4   0.1    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein
      0.038   14.0   0.0      0.068   13.2   0.0    1.4  1  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.042   14.4   0.1       0.07   13.6   0.1    1.4  1  HTH_27          Winged helix DNA-binding domain
      0.063   13.1   0.1       0.11   12.4   0.1    1.4  1  HTH_23          Homeodomain-like domain
      0.088   12.6   0.0       0.23   11.3   0.0    1.6  2  LexA_DNA_bind   LexA DNA binding domain
        0.1   12.6   0.0       0.16   11.9   0.0    1.3  1  HTH_11          HTH domain


Domain annotation for each model (and alignments):
>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   1.6   2.2e-21   2.5e-18       1      42 []       1      42 [.       1      42 [. 0.99

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 2.2e-21
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   +D++D ++L++Lq+daR+sy+eL++rv+lS+++v++RvrrLe
     KIR63386.1  1 MDDMDWALLRELQADARLSYSELSRRVHLSPPAVAERVRRLE 42
                   9****************************************8 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   3.1e-20   3.5e-17       1      48 []       1      48 [.       1      48 [. 0.98

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 3.1e-20
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                +d+ d+++L++Lq+++r+s++eL++r++lSp++v +r++rLee+G+I+
  KIR63386.1  1 MDDMDWALLRELQADARLSYSELSRRVHLSPPAVAERVRRLEESGVIT 48
                799********************************************6 PP

>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       5.2   5.8e+03      13      25 ..      31      43 ..      23      44 .. 0.64
   2 !   33.8   0.0   2.1e-11   2.4e-08      22      74 ..      85     133 ..      79     134 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5.2
                    HHHHHHHHHTSTT CS
  AsnC_trans_reg 13 leefeealaelpe 25
                      +++e++++l+e
      KIR63386.1 31 PPAVAERVRRLEE 43
                    4567777777665 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 2.1e-11
                     TSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEE CS
  AsnC_trans_reg  22 elpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivle 74 
                      +pe++e++r+tGd++ +l+v++ ++ ++er+    +++l  +++ ++++vl+
      KIR63386.1  85 GWPEIMEIHRITGDACSVLRVAAGSIGDFERV----IDRLAPYGQPSSTMVLS 133
                     69******************************....77777777777777776 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.2   1.4e-10   1.6e-07       5      52 ..       3      48 ..       1      63 [. 0.92

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 1.4e-10
                HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2  5 paqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52
                 +++ +L +L +  +  l+ +el rr +ls++av  +++rL++ G ++
  KIR63386.1  3 DMDWALLRELQADAR--LSYSELSRRVHLSPPAVAERVRRLEESGVIT 48
                5789*********98..****************************996 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   9.8e-09   1.1e-05       6      51 ..       6      51 ..       4      56 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 9.8e-09
                HHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR  6 fviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRsk 51
                + +Lr l     ls seL +++++s+++v + ++rLe+ G i+ ++
  KIR63386.1  6 WALLRELQADARLSYSELSRRVHLSPPAVAERVRRLEESGVITGYH 51
                889999999999****************************998666 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.2     1e-07   0.00011      15      56 ..       8      49 ..       6      51 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1e-07
                HHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 15 ilraLaraegltaselaerldlskntlsyHLrvLeeagLvev 56
                +lr+L  ++ l+ sel +r+ ls+  +  ++r Lee g +++
  KIR63386.1  8 LLRELQADARLSYSELSRRVHLSPPAVAERVRRLEESGVITG 49
                79*************************************986 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   6.3e-06    0.0071       9      43 ..      12      49 ..       7      66 .. 0.81
   2 ?   -1.0   0.0       1.8     2e+03      16      31 ..      87     102 ..      83     119 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.3e-06
      HTH_28  9 laaGh..svreaArelgisrrtvyrWikryeegG.iag 43
                l+a    s++e++r++++s+  v   ++r+ee G i g
  KIR63386.1 12 LQADArlSYSELSRRVHLSPPAVAERVRRLEESGvITG 49
                55442369*************************94455 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.8
      HTH_28  16 reaArelgisrrtvyr 31 
                 +e+++++ i+ + +++
  KIR63386.1  87 PEIMEIHRITGDACSV 102
                 6899999987555555 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.4e-06     0.011      14      45 ..      16      47 ..       7      48 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.4e-06
                SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5 14 gelcvcelaeelglsqstvShHLkkLreaGLV 45
                  l+ +el++ ++ls+++v +  ++L+e+G++
  KIR63386.1 16 ARLSYSELSRRVHLSPPAVAERVRRLEESGVI 47
                66889*************************98 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.1e-05     0.024      24      51 ..      19      46 ..       9      53 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.1e-05
                    -HHHHHHHHTS-HHHHHHHHHHHHHTTS CS
  Fe_dep_repress 24 ktkdlaerLnvspssVsemlkkLekdGy 51
                    + ++l++r   sp+ V e +++Le+ G 
      KIR63386.1 19 SYSELSRRVHLSPPAVAERVRRLEESGV 46
                    6789*********************995 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.4   3.4e-05     0.038      15      48 ..      14      47 ..       7      49 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.4e-05
                TBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR 15 apqeltlselArrtglpkStvhRlLqtLvelGyv 48
                a+ +l+ sel+rr +l++++v   ++ L+e G +
  KIR63386.1 14 ADARLSYSELSRRVHLSPPAVAERVRRLEESGVI 47
                45569*************************9976 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   5.2e-05     0.058      20      39 ..      24      43 ..      13      45 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.2e-05
                HHHHTS-HHHHHHHHHHHHH CS
       HTH_1 20 AeeLglsqpavsrqikrLEe 39
                 ++++ls+pav  +++rLEe
  KIR63386.1 24 SRRVHLSPPAVAERVRRLEE 43
                699****************8 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     6e-05     0.068      19      53 ..      15      49 ..       4      59 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6e-05
                EEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE CS
   HTH_Crp_2 19 elpltqeelAsmlGltretvsrilseLkreglisr 53
                + +l+  el++++ l++  v    ++L++ g+i+ 
  KIR63386.1 15 DARLSYSELSRRVHLSPPAVAERVRRLEESGVITG 49
                4689*****************************94 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   6.3e-05      0.07       4      48 ..       4      47 ..       1      56 [. 0.93

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.3e-05
      HTH_27  4 qqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLv 48
                +++++L+ ++  ++r + ++l++r+ ++  ++++ +++L+e G++
  KIR63386.1  4 MDWALLRELQ-ADARLSYSELSRRVHLSPPAVAERVRRLEESGVI 47
                69********.********************************99 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   9.4e-05      0.11      14      46 ..      12      46 ..       6      49 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.4e-05
      HTH_23 14 lae..GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                l+   +ls++e +r+ + s+  v   ++r +e+G+
  KIR63386.1 12 LQAdaRLSYSELSRRVHLSPPAVAERVRRLEESGV 46
                44356*******************88899899994 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0002      0.23      27      57 ..      19      48 ..      18      52 .. 0.91
   2 ?   -2.7   0.0       4.7   5.3e+03       3      17 ..      55      69 ..      54      71 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
                   -HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE CS
  LexA_DNA_bind 27 sireiaralglkSpsaveehLkaLerKGyie 57
                   s  e++r++ l+ p av+e+ ++Le  G+i 
     KIR63386.1 19 SYSELSRRVHLS-PPAVAERVRRLEESGVIT 48
                   567999****97.99*************995 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.7
                   ---HHHHHHHHHHHH CS
  LexA_DNA_bind  3 kLTerQrevldlika 17
                   +L ++ r+v+ li+ 
     KIR63386.1 55 DLARAGRTVVALIRM 69
                   578888999999985 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00015      0.16       5      44 ..       8      46 ..       7      55 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
      HTH_11  5 ilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                +l+ L +a+  +s +eL+++ ++S  +v  ++++Lee+gv
  KIR63386.1  8 LLREL-QADARLSYSELSRRVHLSPPAVAERVRRLEESGV 46
                68889.99999***************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1009.64
//
Query:       KIR63387.1  [L=320]
Description: tryptophan 2,3-dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-52  178.4   0.0    2.8e-50  171.6   0.0    2.7  1  Trp_dioxygenase  Tryptophan 2,3-dioxygenase


Domain annotation for each model (and alignments):
>> Trp_dioxygenase  Tryptophan 2,3-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.6   0.0   1.5e-54   2.8e-50      13     344 ..      41     318 ..      30     320 .] 0.94

  Alignments for each domain:
  == domain 1  score: 171.6 bits;  conditional E-value: 1.5e-54
  Trp_dioxygenase  13 sGllYgdYlkldkllsaqrllseadgkkvhdEhlFivihqayElWfkqivfeldsvrrllseeivdeertlkilkrlkRvvrilelLvaqvtvL 106
                        ++Y+ Y+++  l  +q++ls+     +++E+ F+++ q++El+f +  +el  ++r l++++v+++        l+R    le L+a+++ L
       KIR63387.1  41 R-VPYDAYVHASTLHRLQQPLSD-----DPGEMSFLMVSQIMELYFGLTRHELREAQRCLRADRVRAAL-----APLRRAALHLEGLNAAWKGL 123
                      4.79*******************.....9**************************************99.....9******************* PP

  Trp_dioxygenase 107 etltpldfldfReylspasGFqslqfRllEnklGvksesrvkynrkykevfedddlelllvteeekslldlveawlertPGlesdgfnfwgkfe 200
                        +tp+df+ fR+ l+++sGFqs+++R lE+ lG +++                    l ++ + ++++++++++ + +P              
       KIR63387.1 124 RWMTPADFNRFRNLLGEGSGFQSAMYRHLEFTLGLRDAA-------------------LIRPFRRQAEVHAELRATLAAP-------------- 184
                      *************************************95...................99********************.............. PP

  Trp_dioxygenase 201 ksvekllaellakaaaekdeevlerdltaeyekakevlaslldekrhdalvakGerrlshkalkGalmiyvYrdeprfselyqlleaLmDidel 294
                       s+ + ++ lla+++  +++evl rd+++e + +++v+a++++       +   e     +a  G            + el  l+eaL +++e 
       KIR63387.1 185 -SLWDDVVALLARRGFAVPAEVLGRDVAEEHRPHPAVEAAWVA-------IYDDEEAADEEAGDGETTGEEAGAGGPGDELRLLGEALAEVAEQ 270
                      .99***************************************9.......666666677778888777666666667789999*********** PP

  Trp_dioxygenase 295 ltkWRynHvvlvqRmlGskaGtGGssGyayLrstvsdrykvFldLfnlst 344
                      +  WR+nHv +vqR++G+k G+GGs+G a+L+   s   +vF++L+ ++t
       KIR63387.1 271 FGDWRWNHVKAVQRTMGAKVGSGGSAGLAWLQR--SMARVVFPELWSART 318
                      *********************************..89999********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2427.51
//
Query:       KIR63388.1  [L=445]
Description: kynurenine 3-monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-26   92.5   0.0    3.9e-26   92.1   0.0    1.1  1  FAD_binding_3   FAD binding domain
    8.6e-09   35.5   0.1    2.9e-08   33.8   0.1    2.0  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    3.5e-08   33.4   0.8    3.8e-06   26.7   0.1    2.3  2  DAO             FAD dependent oxidoreductase
      7e-05   23.3   0.0    0.00015   22.2   0.0    1.5  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00011   21.6   0.0     0.0003   20.1   0.0    1.6  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00029   20.1   0.0    0.00064   18.9   0.0    1.6  1  FAD_binding_2   FAD binding domain
    0.00032   19.9   0.0    0.00046   19.4   0.0    1.2  1  GIDA            Glucose inhibited division protein A
      0.001   18.8   0.0      0.002   17.8   0.0    1.5  1  ApbA            Ketopantoate reductase PanE/ApbA
     0.0034   16.5   0.1      0.018   14.1   0.0    2.0  2  Lycopene_cycl   Lycopene cyclase protein
     0.0037   17.2   0.0     0.0063   16.4   0.0    1.3  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
  ------ inclusion threshold ------
      0.017   13.9   0.0      0.041   12.6   0.0    1.6  2  HI0933_like     HI0933-like protein
      0.076   13.0   0.0       0.12   12.4   0.0    1.3  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
      0.076   13.2   0.0       0.21   11.7   0.0    1.7  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
      0.081   12.3   1.0       0.33   10.2   0.0    2.3  3  FAD_oxidored    FAD dependent oxidoreductase
      0.085   11.9   0.0       0.18   10.9   0.0    1.5  1  RELT            Tumour necrosis factor receptor superfamily m


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0   3.2e-29   3.9e-26       3     327 ..       7     338 ..       5     358 .. 0.81

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 3.2e-29
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS....S-..-EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHHC CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp....ra..dglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradlel 92 
                    ++++VGaG+aG +la +L+++G rv l e+r +         r+    l++r ++ lr +Gl++++la++ p  +  ++        + a   ++ 
     KIR63388.1   7 EIAVVGAGLAGCLLACFLARRGYRVALYERRPDPRTGRvergRSinLALSERGLDALRRIGLAEQVLADALPMRGRMIHPVVG----EPAFQSYS- 97 
                    678***************************987544334411542235679*******************9988766665555....56888888. PP

                    HHCST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEE CS
  FAD_binding_3  93 esspervtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagv 187
                     ++ +++  ++   l+++L+ +a++ + ++v f++++++l    +  t e++ ++ + ++t  a  + GaDG+ S+vr +l       +++  +++
     KIR63388.1  98 ATGDRAINSISRGALNNALLTAATALPgVRVAFDHRLVGL----DPATGEMTFETPQGKTTAAAPVVLGADGAGSAVRGQLLAY-GVLQES--LDF 186
                    89************************************55....5566778888888899********************9865.333333..688 PP

                    EEEEEEC.-SCCCTTC.....CEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEEEEEEEEE... CS
  FAD_binding_3 188 ldvlfda.dlsdivep.....lvlilsaesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivgektldveieevsawtva... 274
                    ld   ++  ++ +v +       +++  + +  m+i+l n ++ f+  + + ++ + +    t   +++r  + + ++ l+  ++ v  ++++   
     KIR63388.1 187 LDYGYKElTVP-PVGGefaldPAALHIWPRGTSMMIALPNPDRSFTCTLFWPTHGTASFASLTSPAAIERHFATHYPDLLPLAPNLVDDYQHNpvg 281
                    99988887887.55554777645555555555699999998888**************99999999999999999999998877766666654222 PP

                    ...EEEESSSEET.TEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS- CS
  FAD_binding_3 275 ...qrvaekyrkg.rvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAk 327
                       +  +++++ g rv l GDAaH+  P  GqG N a +D+v L   L +    +A 
     KIR63388.1 282 vlgTVRCTPWQAGgRVGLLGDAAHAIVPFYGQGANCAFEDVVALDHCLDECADDWAA 338
                    3336789*****99******************************9988887777775 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   2.5e-11   2.9e-08       1      35 [.      10      45 ..      10      66 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2.5e-11
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS.GGG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG.Gra 35
                   +vGaGl+G+++A++La++g++v l+e+r+++  Gr+
     KIR63388.1 10 VVGAGLAGCLLACFLARRGYRVALYERRPDPRtGRV 45
                   8***************************99743554 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1   3.2e-09   3.8e-06       2      34 ..       8      42 ..       7      52 .. 0.92
   2 !    5.5   0.1    0.0089        11     145     205 ..     109     169 ..      45     290 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 3.2e-09
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgdiags 34
                ++++G+G +G+  A +Larrg  V+l+e+++++ +
  KIR63388.1  8 IAVVGAGLAGCLLACFLARRGyrVALYERRPDPRT 42
                99****************************99874 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0089
                 HHHHHHHHHHHHHHT.T-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--.GGGHH CS
         DAO 145 pakltaalaraaeal.Gveilegtevtgleeedgkvwgverttp.gendaadavVnaa.Gawsd 205
                   +l +al+ aa al Gv++ + ++ +gl+    + ++   +tp g ++aa  vV+ a Ga+s 
  KIR63388.1 109 RGALNNALLTAATALpGVRVAFDHRLVGLDP-ATGEMTF--ETPqGKTTAAAPVVLGAdGAGSA 169
                 5688999****999979************54.4455888..77779875534477655266654 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.3e-07   0.00015       2      35 ..       8      41 ..       7      52 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.3e-07
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                ++vvG+G+ g+ lA++la+ g +V + er++ ++
  KIR63388.1  8 IAVVGAGLAGCLLACFLARRGYRVALYERRPDPR 41
                89****************************9987 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.5e-07    0.0003       3     177 ..       8      40 ..       6     169 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.5e-07
                  EEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   3 vvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkkegdeekiay 100
                  ++v+G+G AG+ +a +la+ g++v+l+e                                                                      
   KIR63388.1   8 IAVVGAGLAGCLLACFLARRGYRVALYE---------------------------------------------------------------------- 35 
                  5666666666666666666666666665...................................................................... PP

                  SEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 101 dklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrl 177
                                                                                          +r+ +
   KIR63388.1  36 ------------------------------------------------------------------------RRPDP 40 
                  ........................................................................44433 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   5.4e-07   0.00064       2      32 ..       8      38 ..       7      64 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 5.4e-07
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSS CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeq 32
                   + V+G+GlAG+  A  +a++G +va+ e  +
     KIR63388.1  8 IAVVGAGLAGCLLACFLARRGYRVALYERRP 38
                   68************************99866 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.8e-07   0.00046       2      30 ..       8      36 ..       7      57 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.8e-07
                EEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLith 30
                + V+G+G+AGc  A  +ar+G++v+L+  
  KIR63388.1  8 IAVVGAGLAGCLLACFLARRGYRVALYER 36
                78************************944 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.6e-06     0.002       1      43 [.       8      51 ..       8      61 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.6e-06
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrl 43
                ia++GaG  G+lla+ La+ g+ v l+ r++      +++G ++
  KIR63388.1  8 IAVVGAGLAGCLLACFLARRGYRVALYERRPdPRTGRVERGRSI 51
                89***************************995544466666555 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.5e-05     0.018       2      39 ..       8      42 ..       7      57 .. 0.90
   2 ?   -0.6   0.0      0.45   5.4e+02     112     150 ..     135     175 ..      82     181 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieaspsllfp 39
                   ++v+GaG+Ag++lA  l  a+ g +v l e  p++ ++
     KIR63388.1  8 IAVVGAGLAGCLLACFL--ARRGYRVALYERRPDP-RT 42
                   89***************..9999999999998887.55 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.45
  Lycopene_cycl 112 veeeea.geslvvleggr.kirarlvvdarglaslkkarrl 150
                    v  ++a ge +  ++ g+ +  a++v+ a g++s+ +++ l
     KIR63388.1 135 VGLDPAtGEMTFETPQGKtTAAAPVVLGADGAGSAVRGQLL 175
                    44455556888899999867889999999999999877655 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.2e-06    0.0063       2      34 ..       8      40 ..       7      63 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.2e-06
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseea 34
                +av+GaG+ G  +a  +a++g++V l++++++ 
  KIR63388.1  8 IAVVGAGLAGCLLACFLARRGYRVALYERRPDP 40
                9***************************98775 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.4e-05     0.041       2      33 ..       7      38 ..       6      44 .. 0.92
   2 ?   -2.5   0.0       1.3   1.6e+03     118     162 ..     120     163 ..     114     171 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.4e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 +++v+G+G AG + A  +a+rg rV+l+e+ +
   KIR63388.1  7 EIAVVGAGLAGCLLACFLARRGYRVALYERRP 38
                 689**************************976 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.3
                  HHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE-- CS
  HI0933_like 118 elkeagvklrletevksvekeedgkfrvktkseeeleadklvlAt 162
                  +    gv++  ++++ +++  +++ ++++t ++++ +a+ +vl  
   KIR63388.1 120 ATALPGVRVAFDHRLVGLDPATGE-MTFETPQGKTTAAAPVVLGA 163
                  444568888888999888775555.88888666666666666643 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.9e-05      0.12       1      33 [.       7      39 ..       7      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.9e-05
                    -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HH CS
  NAD_Gly3P_dh_N  1 kiavlGaGswGtalAkvlaenghevrlwvreee 33
                    +iav+GaG  G  lA+ la++g +v l+ r+++
      KIR63388.1  7 EIAVVGAGLAGCLLACFLARRGYRVALYERRPD 39
                    59***************************9984 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00018      0.21       1      42 [.       7      48 ..       7      75 .. 0.86
   2 ?   -2.3   0.0       3.6   4.3e+03      49     103 ..     359     415 ..     344     428 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
                   EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT CS
  NAD_binding_2  1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg 42
                   +i+++G G  G  +a  l+++gy+va+y+r+++  +  v++g
     KIR63388.1  7 EIAVVGAGLAGCLLACFLARRGYRVALYERRPDPRTGRVERG 48
                   59*****************************99888877776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.6
                    HHHHHHHCSEEEE-S.SSHHHHHHHHHS.HCCC--TT-EEEE-S---HHHHHHHHHH CS
  NAD_binding_2  49 ieelvasldvvitmv.kagkavdevieg.llealkkgdilidgstsspedtrelake 103
                    ++++v+  d+v   v +a +  d+ +e+ l  ++ ++  l+ +st+ ++  r++ ++
     KIR63388.1 359 LANFVEMRDKVASPVfQARRRLDHALERaLPGRYVSQYELVSFSTTPYARVRRRVRR 415
                    555666665555544245556666666634444555566778888888877777665 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00028      0.33       2      32 ..       8      38 ..       7      40 .. 0.95
   2 ?   -1.4   0.0      0.95   1.1e+03      95     146 ..     119     167 ..      99     171 .. 0.80
   3 ?   -1.2   0.2      0.82   9.8e+02     291     312 ..     393     414 ..     359     438 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00028
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveerg 32
                  + VvG+g+aG+  A   ar+G +v+L e+r+
    KIR63388.1  8 IAVVGAGLAGCLLACFLARRGYRVALYERRP 38
                  89**************************986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.95
  FAD_oxidored  95 emlaeagvtvllntrlvevekegkriesvtveskegrktirAkvfiDATgdG 146
                   +  a +gv+v +++rlv+ +       ++t+e+ +g++t +A+v++ A g G
    KIR63388.1 119 AATALPGVRVAFDHRLVGLDPA---TGEMTFETPQGKTTAAAPVVLGADGAG 167
                   4446689999999999999986...468999999999999999999887666 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.82
  FAD_oxidored 291 fekaeleglapqlyvREsRRiv 312
                   +++ el+++ +++y R  RR++
    KIR63388.1 393 VSQYELVSFSTTPYARVRRRVR 414
                   5555666677777777666654 PP

>> RELT  Tumour necrosis factor receptor superfamily member 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00015      0.18      13      38 ..      13      38 ..      10      42 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
        RELT 13 mGLlGvLiChvLkkKGYrCttekeee 38
                 GL G L+  +L ++GYr+   +  +
  KIR63388.1 13 AGLAGCLLACFLARRGYRVALYERRP 38
                59****************98776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3137.42
//
Query:       KIR63389.1  [L=264]
Description: 2-keto-4-pentenoate hydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-08   33.0   0.0    6.7e-08   32.5   0.0    1.2  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   3.8e-12   6.7e-08      37     215 ..      82     257 ..      51     260 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3.8e-12
                    ETTE..EE-TTSSSS-EE......EEEEEEEESS..-B--T--HHHHHTTEEEEEEEEEEE-SBGGG---.HHHHHHTGGGEEEEEE-B--B-.ST CS
  FAA_hydrolase  37 krasslvgpgdpirrPagsekldyEvELavvigk..plrevlsveeAedaiaGytllnDvsaRdlqaeekaplgwflgksfdtftpiGpwivtpde 130
                     + + +v++gd++++ +  + + +E+E+a+v+g+   ++++ +  +   a+  ++ + +++   +  ++   +++++++++ +  ++G+   +  +
     KIR63389.1  82 LTDAMAVADGDEVPIGRLLQ-PRVEAEIAFVLGAdlTVGRP-TTVDLLRAVDHVLPAIEIVDSRVAGWDISIVDTVADNASSGLFVLGTAPRRLPD 175
                    55677889999999999955.8************6656666.78999***************99*****9556****99999******99644444 PP

                    T---SS-EEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHH.....-B-TT-EEEEEES.......S--EE--TT-EEEEEETTTEEEEE CS
  FAA_hydrolase 131 ledpedlelrlrvngeevqdsntkdmifspaeliahlsagl.....tLepGdliltGTpsgvgaeeeslkflkdgDeveveieglGelrn 215
                    + d + + + l   ge+v+ +  + ++ +p   + +l+ +l     +L++Gd++l+G + g      +++ + +g   e++i+glG++r+
     KIR63389.1 176 V-DLRLCGMVLEHAGEPVSVGAGAACLGNPLHALGWLAGTLaragdPLRAGDVVLSGAL-G------PMVPVTPGAAYEARISGLGSVRT 257
                    4.36677777777***********************9999999999*************.4......799*****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1737.28
//
Query:       KIR63390.1  [L=257]
Description: 4-oxalocrotonate decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2043.54
//
Query:       KIR63391.1  [L=142]
Description: 2-aminomuconate deaminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-24   84.6   0.0    6.7e-24   84.2   0.0    1.2  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.0   3.8e-28   6.7e-24       7     120 ..      14     135 ..       9     136 .. 0.91

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 3.8e-28
                    TSSS-BSEEEETTEEEEEEE-SB-T.........TTSCB...-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSS CS
  Ribonuc_L-PSP   7 aaapYsqavkagnlvyvsGqlpldp.........etgelv..egdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafd 91 
                    + +++ ++  ag++v+vsG+   +p         +  e++  + d++eqtr+++ n++ +L+++ga+l+d V+vt +l++++df  +nev+ae+fd
     KIR63391.1  14 PRGAFPHVKVAGGFVFVSGTSSRRPdntfagvavD--EFGttDLDIREQTRAVIGNVRDLLRSVGADLADLVQVTSYLVNMNDFGGYNEVWAEFFD 107
                    67888998899***********9999999999553..5444499**************************************************** PP

                    SSTS--EEEEEE-SBSG.GG-SEEEEEEEE CS
  Ribonuc_L-PSP  92 elkeaParsaveVaaLp.kgakvEIeaiav 120
                    ++   P r++v+V +Lp +++++E++a+a 
     KIR63391.1 108 ADG--PTRTTVAVHQLPhPHLLIEMQAVAL 135
                    **6..**********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1012.79
//
Query:       KIR63392.1  [L=174]
Description: 3-hydroxyanthranilate 3,4-dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-47  159.6   0.0    4.6e-47  159.4   0.0    1.0  1  3-HAO           3-hydroxyanthranilic acid dioxygenase
    5.8e-06   25.9   0.4    9.7e-06   25.2   0.4    1.4  1  Cupin_2         Cupin domain
    0.00016   21.5   0.0    0.00019   21.2   0.0    1.1  1  Cupin_8         Cupin-like domain
     0.0052   16.5   0.0      0.012   15.2   0.0    1.7  1  Cupin_3         Protein of unknown function (DUF861)
     0.0055   15.3   0.1      0.007   15.0   0.1    1.1  1  Terminase_GpA   Phage terminase large subunit (GpA)
     0.0056   16.3   1.0       0.74    9.5   0.0    2.4  2  zf-NADH-PPase   NADH pyrophosphatase zinc ribbon domain
     0.0081   15.8   2.2       0.33   10.7   0.2    2.3  2  zinc_ribbon_2   zinc-ribbon domain
  ------ inclusion threshold ------
      0.011   15.1   2.4       0.64    9.5   0.4    2.3  2  zf-ribbon_3     zinc-ribbon domain
      0.014   15.3   0.1      0.021   14.7   0.1    1.4  1  AraC_binding    AraC-like ligand binding domain
      0.015   15.0   0.0      0.027   14.3   0.0    1.4  1  Cys_rich_KTR    Cysteine-rich KTR
      0.019   14.9   2.4       0.15   12.1   2.4    2.0  1  DZR             Double zinc ribbon
       0.03   14.2   1.1       0.41   10.6   0.0    2.4  2  Nudix_N_2       Nudix N-terminal
      0.049   14.0   3.0        1.2    9.6   0.1    2.7  2  zf-IS66         zinc-finger binding domain of transposase IS6
       0.06   13.5   0.3        3.5    7.8   0.1    2.3  2  Zn-ribbon_8     Zinc ribbon domain
       0.07   13.0   0.6       0.07   13.0   0.6    1.8  2  Zn_ribbon_SprT  SprT-like zinc ribbon domain
      0.089   12.4   0.2       0.13   11.9   0.2    1.2  1  Cupin_1         Cupin
        0.1   12.4   1.0       0.23   11.2   0.1    1.9  2  zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal
       0.11   12.7   0.1        7.8    6.7   0.0    2.8  3  Ribosomal_S27   Ribosomal protein S27a
       0.16   11.7   4.7        0.3   10.9   0.5    2.2  2  Rubredoxin_2    Rubredoxin metal binding domain
        1.1    8.9   4.8       0.94    9.1   0.1    2.6  3  zf_UBZ          Ubiquitin-Binding Zinc Finger
        1.9    8.6   5.4        5.2    7.2   0.3    2.2  2  UPF0547         Uncharacterised protein family UPF0547


Domain annotation for each model (and alignments):
>> 3-HAO  3-hydroxyanthranilic acid dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   0.0   5.4e-50   4.6e-47       6     151 .]       7     155 ..       1     155 [. 0.95

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 5.4e-50
                 EEEHHHHHHHCGGGCSTTT-EEEEEE..SSEEEEEE-SSB--S-EEE-SS-EEEEEEES-EEEEEEETTCCCEEEE-TTEEEEE-TT--EEEEE-.TT- CS
       3-HAO   6 ainiekwvkenrellkPPvcnkclhk..dglkvlivGGPnerkdyhleegeeffyqkkGdmvlkvldegkardivireGeifllParvphsPqrf.ads 101
                 +   + w+ en++llkPPv+nk ++   d+++v++vGGPn+r+d+h+++ eeffyq kG+m ++++     r + +reG++++lP   phsPqr   +s
  KIR63392.1   7 PFSFPGWIAENQHLLKPPVGNKEMFPggDDFIVMVVGGPNQRTDFHVDPYEEFFYQVKGNMHVNLMTPEGPRTVHVREGQMWMLPRDTPHSPQRPePGS 105
                 567789******************963378****************************************************************7269* PP

                 EEEEEEE---TTS-EEEEEESTTTSSEEEEEEE-SSSCCCHHHHHHHHHH CS
       3-HAO 102 vGlvvererleteldklryyvgesnqvlfekelqlkdletdlkpvikefy 151
                 +G+vver r+e+ l+k ++y++++  +++e elq++d+  dl+pv+  fy
  KIR63392.1 106 IGVVVERVREEGTLEKFQWYCPQCGAKVHEVELQVRDIAADLPPVFGAFY 155
                 **********************************************9997 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.4   1.1e-08   9.7e-06       7      58 ..      45      99 ..      39     110 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.1e-08
                TTEEEEEECSSSEEEEEEEEESEEEEE.ECTE...EEEEETTEEEEE-TT-EEEEE CS
     Cupin_2  7 pGesapshrHpgedeffyVleGegelt.vdge...eveleaGdsvyfpagtpHrfr 58
                p++ + +h+ p+e effy ++G +++  +  e   +v++++G++++ p+ tpH   
  KIR63392.1 45 PNQRTDFHVDPYE-EFFYQVKGNMHVNlMTPEgprTVHVREGQMWMLPRDTPHSPQ 99
                7778889******.************955433558******************875 PP

>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.2e-07   0.00019     131     215 ..      36     137 ..      14     143 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.2e-07
     Cupin_8 131 eavnlWlGnsasvsslHkDhyeNlycvvrGrKkftLfpPsdapflyea.................slsptedgtvvssvdveepdlekfprlkda..kk 210
                 + + + +G +++++ +H D+ye ++++v+G  ++ L+ P+    + ++                 + +p + g vv++v  ee  lekf+ ++     k
  KIR63392.1  36 DFIVMVVGGPNQRTDFHVDPYEEFFYQVKGNMHVNLMTPEGPRTVHVRegqmwmlprdtphspqrP-EPGSIGVVVERVR-EEGTLEKFQWYCPQcgAK 132
                 55667799********************************99999888667766665554332211.1112223333333.344445666655555555 PP

     Cupin_8 211 alevt 215
                 + ev+
  KIR63392.1 133 VHEVE 137
                 55555 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.5e-05     0.012      24      60 ..      55      94 ..      39     118 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-05
                SSEEEEEEEECEEEE...EETTTEEEEEETTEEEEE-TTE CS
     Cupin_3 24 eedEfcyileGevkv...tpeggetvelraGDlvvlpkgl 60
                +++Ef+y ++G+++v   tpeg  tv++r+G +++lp ++
  KIR63392.1 55 PYEEFFYQVKGNMHVnlmTPEGPRTVHVREGQMWMLPRDT 94
                459***********95556778888************987 PP

>> Terminase_GpA  Phage terminase large subunit (GpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   8.2e-06     0.007     183     236 ..     108     169 ..      84     172 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.2e-06
  Terminase_GpA 183 sriealyeesdqrryyvpCphCgelqe...lsferlkwpege.....aeekaryvCphcgsl 236
                      +e+  ee++ +++ + Cp+Cg+      l+ +++  +  +      +++a+ +C +cg l
     KIR63392.1 108 VVVERVREEGTLEKFQWYCPQCGAKVHeveLQVRDIAADLPPvfgafYADEAARTCGECGAL 169
                    45789999***************76544558888888855446677888899999****986 PP

>> zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00087      0.74       5      14 ..     125     134 ..     124     137 .. 0.84
   2 ?    5.0   0.4     0.023        20      18      31 ..     157     170 ..     156     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00087
  zf-NADH-PPase   5 FCgrCGapte 14 
                    +C++CGa+++
     KIR63392.1 125 YCPQCGAKVH 134
                    8******987 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.023
  zf-NADH-PPase  18 ggwarvCpaCgleh 31 
                    ++ ar C  Cg+ h
     KIR63392.1 157 DEAARTCGECGALH 170
                    56789999999987 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.2   0.00039      0.33       1       9 [.     125     133 ..     125     137 .. 0.73
   2 ?    4.6   0.1     0.033        28      13      21 ..     160     168 ..     157     169 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00039
  zinc_ribbon_2   1 fCpnCGael 9  
                    +Cp+CGa++
     KIR63392.1 125 YCPQCGAKV 133
                    688888776 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.033
  zinc_ribbon_2  13 akFCpyCGt 21 
                    a+ C +CG+
     KIR63392.1 160 ARTCGECGA 168
                    789999997 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.4   0.00075      0.64       4      11 ..     125     132 ..     125     135 .. 0.82
   2 ?    5.2   0.1     0.017        15      12      24 ..     156     168 ..     152     170 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00075
  zf-ribbon_3   4 rCPnCGap 11 
                  +CP+CGa+
   KIR63392.1 125 YCPQCGAK 132
                  7*****95 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.017
  zf-ribbon_3  12 lssddnvCpyCGt 24 
                  +++ +++C  CG+
   KIR63392.1 156 ADEAARTCGECGA 168
                  6777899999996 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   2.4e-05     0.021      10      62 ..      43      99 ..      36     126 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-05
                  TSTT-SEEEETT-SEEEEEEEEE-EEEEE....TTEEEEE-TT-EEEE-TTS-EEEE CS
  AraC_binding 10 gypdhsfpphvhdeyvihyvteGtgrlrl....ngrtydlgpGdlfLlppgepHdye 62
                  g p+++++ hv ++ ++ y ++G+  + l    + rt+++++G++  lp+++pH+ +
    KIR63392.1 43 GGPNQRTDFHVDPYEEFFYQVKGNMHVNLmtpeGPRTVHVREGQMWMLPRDTPHSPQ 99
                  7799********************9998744546677*****************855 PP

>> Cys_rich_KTR  Cysteine-rich KTR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.2e-05     0.027      16      34 ..     112     130 ..     109     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.2e-05
  Cys_rich_KTR  16 kiredTvLknfpLfCPKCk 34 
                   ++re+  L++f  +CP C 
    KIR63392.1 112 RVREEGTLEKFQWYCPQCG 130
                   89****************6 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.4   0.00017      0.15      14      36 ..     125     168 ..     117     171 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00017
         DZR  14 fCseCgtklkavaa.....................edrCpsCge 36 
                 +C++Cg+k+ +v+                      +++C +Cg+
  KIR63392.1 125 YCPQCGAKVHEVELqvrdiaadlppvfgafyadeaARTCGECGA 168
                 88888888876555788888888888888888887788888876 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00048      0.41       2      11 ..     125     134 ..     124     142 .. 0.83
   2 ?    1.8   0.2      0.28   2.4e+02      24      32 ..     162     170 ..     157     170 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00048
                 B-TTT--B-E CS
   Nudix_N_2   2 FCsqCGtpve 11 
                 +C+qCG++v+
  KIR63392.1 125 YCPQCGAKVH 134
                 9*****9986 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.28
                 EETTTTEEE CS
   Nudix_N_2  24 vCpaCgtih 32 
                 +C  Cg+ h
  KIR63392.1 162 TCGECGALH 170
                 699999876 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0014       1.2       4      23 ..     126     144 ..     125     151 .. 0.75
   2 ?    3.9   0.6     0.085        73       2      12 ..     161     170 ..     160     173 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0014
     zf-IS66   4 CpcCGgllkpigedrvreel 23 
                 Cp+CG+++++++   vr + 
  KIR63392.1 126 CPQCGAKVHEVELQ-VRDIA 144
                 ******99**9999.88553 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.085
     zf-IS66   2 rtCpcCGgllk 12 
                 rtC +CG+l +
  KIR63392.1 161 RTCGECGAL-H 170
                 79*****85.5 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0042       3.5      28      38 ..     125     135 ..     110     136 .. 0.79
   2 ?    3.5   0.0     0.091        77      23      34 ..     157     168 ..     150     171 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
  Zn-ribbon_8  28 aCPeCgsevrr 38 
                   CP+Cg++v+ 
   KIR63392.1 125 YCPQCGAKVHE 135
                  3*****99875 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.091
  Zn-ribbon_8  23 dapltaCPeCgs 34 
                  d++  +C eCg+
   KIR63392.1 157 DEAARTCGECGA 168
                  667778999997 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.6   8.2e-05      0.07       2      13 ..     121     132 ..     120     135 .. 0.85
   2 ?   -1.3   0.3       2.6   2.2e+03       7      11 ..     163     167 ..     162     170 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.2e-05
  Zn_ribbon_SprT   2 kyvYrCtgCgre 13 
                     k+ ++C++Cg +
      KIR63392.1 121 KFQWYCPQCGAK 132
                     8*********75 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.6
  Zn_ribbon_SprT   7 CtgCg 11 
                     C+ Cg
      KIR63392.1 163 CGECG 167
                     88998 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00015      0.13      49      98 ..      52      97 ..      29     115 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
                EEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEE CS
     Cupin_1 49 hyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhf 98
                h+   ++e +y ++G ++v +++p+     ++  +reG+++ +P+  +h 
  KIR63392.1 52 HVD-PYEEFFYQVKGNMHVNLMTPEG---PRTVHVREGQMWMLPRDTPHS 97
                555.678999***************8...34445************9997 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00027      0.23      39      53 ..     118     132 ..     112     133 .. 0.86
   2 ?   -1.1   0.1       1.9   1.6e+03      47      53 ..     163     169 ..     158     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00027
  zinc_ribbon_10  39 eleevkyrCpkCgal 53 
                     +le+++++Cp+Cga+
      KIR63392.1 118 TLEKFQWYCPQCGAK 132
                     5789*********97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.9
  zinc_ribbon_10  47 CpkCgal 53 
                     C +Cgal
      KIR63392.1 163 CGECGAL 169
                     8899886 PP

>> Ribosomal_S27  Ribosomal protein S27a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.6   1.4e+03       4      22 ..      60      78 ..      59      79 .. 0.83
   2 ?    6.7   0.0    0.0092       7.8       7      28 ..     113     133 ..     112     134 .. 0.86
   3 ?    2.0   0.1      0.29   2.5e+02      37      43 ..     161     167 ..     148     168 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.6
                   SCCESSSSSEEESS-B-SS CS
  Ribosomal_S27  4 yYkvddsgkverlrkeCpr 22
                   +Y+v+++  v+    e pr
     KIR63392.1 60 FYQVKGNMHVNLMTPEGPR 78
                   8*****9999988777665 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0092
                    ESSSSSEEESS-B-SS-S-TTS CS
  Ribosomal_S27   7 vddsgkverlrkeCpreCGaGv 28 
                    v ++g+ e+ +  Cp+ CGa v
     KIR63392.1 113 VREEGTLEKFQWYCPQ-CGAKV 133
                    778899999999****.**965 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.29
                    EEESSTT CS
  Ribosomal_S27  37 kyCGkCg 43 
                    ++CG Cg
     KIR63392.1 161 RTCGECG 167
                    6899998 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   0.00035       0.3      12      22 ..     121     131 ..     118     131 .. 0.89
   2 ?    2.6   0.3      0.13   1.1e+02       3      10 ..     163     170 ..     162     172 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00035
  Rubredoxin_2  12 kwfGrCpsCgs 22 
                   k+++ Cp+Cg+
    KIR63392.1 121 KFQWYCPQCGA 131
                   789******96 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.13
  Rubredoxin_2   3 CsqCGfes 10 
                   C +CG+ +
    KIR63392.1 163 CGECGALH 170
                   99999876 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       3.9   3.4e+03      22      25 ..      50      53 ..      49      53 .. 0.83
   2 ?    9.1   0.1    0.0011      0.94       3      18 ..     124     139 ..     123     139 .. 0.87
   3 ?    1.0   0.1      0.37   3.2e+02       4      10 ..     162     168 ..     160     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.9
      zf_UBZ 22 DwHf 25
                D+H+
  KIR63392.1 50 DFHV 53
                ***7 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0011
      zf_UBZ   3 ylCerCgkeipeselq 18 
                 + C++Cg+++ e elq
  KIR63392.1 124 WYCPQCGAKVHEVELQ 139
                 78********998876 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.37
      zf_UBZ   4 lCerCgk 10 
                 +C +Cg+
  KIR63392.1 162 TCGECGA 168
                 8****96 PP

>> UPF0547  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.3    0.0061       5.2       3      10 ..     126     133 ..     125     135 .. 0.91
   2 ?    3.4   0.9     0.097        82      12      21 ..     158     167 ..     158     167 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0061
     UPF0547   3 CPeCeakv 10 
                 CP+C akv
  KIR63392.1 126 CPQCGAKV 133
                 *****998 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.097
     UPF0547  12 vaaqfCphCG 21 
                 +aa+ C +CG
  KIR63392.1 158 EAARTCGECG 167
                 59*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1274.06
//
Query:       KIR63393.1  [L=487]
Description: amidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-93  314.8   0.3    5.4e-93  312.4   0.3    1.8  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.4   0.3     3e-97   5.4e-93       1     450 [.      25     448 ..      25     449 .. 0.93

  Alignments for each domain:
  == domain 1  score: 312.4 bits;  conditional E-value: 3e-97
                 HHHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE CS
     Amidase   1 elveaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkT 99 
                 +lve+ l+r++a+ +++ a+vtv+ e+a+++A+++d+  a  + +gpLhGvP+++KD   ++gv+tt+Gs a+++ +++ Da vv+++++aG v lgkT
  KIR63393.1  25 DLVEHHLSRVDALGDTVGAFVTVTGEAARQAARAADATPA--QGRGPLHGVPTAIKDLTLTAGVRTTFGSAAFADLVPPLDADVVRLIRAAGLVSLGKT 121
                 689*********************************9998..99******************************************************* PP

                 --SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSHH CS
     Amidase 100 nmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsve 198
                 +++e++ ++++e  v  p+rNPwd+ +t+GGSSGG +AavAaglvp+a G+D+GGS RiPAs+cglvG+KP++g v+  ++   + +l  +Gpl+r+v 
  KIR63393.1 122 TTSELGCSLYSEGLVAPPARNPWDLAYTAGGSSGGAGAAVAAGLVPVAQGSDGGGSLRIPASLCGLVGHKPSRGAVPGGPLGFGAFGLPINGPLGRTVA 220
                 *************************************************************************************************** PP

                 HHHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGC..SS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHHHHHHH CS
     Amidase 199 dlalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedg..vasldpevqravekalkaLeeaGhevvevelpsleealslyylilvae 295
                 d+a+ll+v++ + p  +  +++    + l ++++ ++  lr+G  +      + ++p++ +av++a++ L eaGhevv+v  p  +e+++l+ +++++ 
  KIR63393.1 221 DVAALLDVMAVPVPGEPYLPPPAPDGGYLGAARGAAPGRLRVGRFTAPMlaDEPVHPDCVAAVDAAAALLAEAGHEVVDVPAPFGPEVWPLFEIVWYVL 319
                 ***************999998666778889999************999877889************************************887777766 PP

                 HHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSSS--BCCCCCH CS
     Amidase 296 assnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafeelDvllsPtaptpaprlgekdk 394
                 a                      + +p  r++ l++ ++  + +g+  +sa++ ++ + + q+  r+  r+ a+    +D+ll+Pt + p  + g ++ 
  KIR63393.1 320 AL---------------------TPVPPERESRLLPLTRLLRSRGA-EISAGTLTSTLGELQAQVRRAARRTAG----CDLLLCPTLSAPQAPVGWFTA 392
                 65.....................45788888999999999998888.677776555555555555555666666....5******************99 PP

                 HHCSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHH CS
     Amidase 395 tidsytvlynlldftavvvpvnlaglpalsvpagksedglPvGvqvigkafqeetl 450
                 ++d +    ++  f + ++++n++g+p++s+p+g +++glPvGv ++g++++++tl
  KIR63393.1 393 AGDPERDFDLQRRFSPYCAVFNVTGEPSVSLPLGRTAEGLPVGVLLTGRYGADATL 448
                 998888888888888888***********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3441.67
//
Query:       KIR63394.1  [L=94]
Description: hypothetical protein TK50_21475 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 680.91
//
Query:       KIR63395.1  [L=135]
Description: hypothetical protein TK50_21480 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-27   94.2   0.0      9e-27   93.9   0.0    1.0  1  DUF5130          Domain of unknown function (DUF5130)
    6.7e-08   32.7   0.0    7.5e-08   32.6   0.0    1.1  1  TPM_phosphatase  TPM domain


Domain annotation for each model (and alignments):
>> DUF5130  Domain of unknown function (DUF5130)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0     1e-30     9e-27      24     133 ..      17     126 ..       6     129 .. 0.95

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 1e-30
     DUF5130  24 velPfskddlvalDdaLkeasrkakvrfavyiGdlgedtaaaareilakvpepenavLiavsPnqraievvsGaevadrvadrvaqlGvtaavssfreG 122
                  + Pfs+++l+++D+aL+ a + +   f+vy+G l+e   a+a+ + +++ +p+++vLiavsPnqr++e+v+G++ ++r+ d+ a+l   + v++f  G
  KIR63395.1  17 LDGPFSTRQLLRIDEALRLADQGTGLVFSVYVGGLDEPIRAHAQRLHRQLADPDRSVLIAVSPNQRQLEIVTGRQARKRIPDTYAKLAALSMVAAFGGG 115
                 468************************************************************************************************ PP

     DUF5130 123 dLidglvsavr 133
                 dL  g++s + 
  KIR63395.1 116 DLAGGIISGLD 126
                 *******9886 PP

>> TPM_phosphatase  TPM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   8.4e-12   7.5e-08      22     123 ..      34     129 ..      18     131 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 8.4e-12
                      HHHHTT--EEEEEEESB-TT--HHHHHHHHHHHHSTTTTS-SSEEEEEEETTTTEEEEEE-STTTTT--HHHHHHHHHHTHHHHHHHT-HHHHH CS
  TPM_phosphatase  22 alekktgvqivvvtvdsldgediedyadelfdkwglgkkkkdngvllliavddrkvrietgyglegaltdaraesildetilpalkdgdyaggi 115
                      +l+++    ++ v+v  ld e i+  a++l +++     + d  vl+++++++r++ i tg+++++ ++d  a+      ++ a+  gd aggi
       KIR63395.1  34 RLADQGTGLVFSVYVGGLD-EPIRAHAQRLHRQLA----DPDRSVLIAVSPNQRQLEIVTGRQARKRIPDTYAKLAALS-MVAAFGGGDLAGGI 121
                      4555555667777777773.568889999977774....56689*****************************888888.************** PP

                      HHHHHHHH CS
  TPM_phosphatase 116 laavdaie 123
                       +++d+++
       KIR63395.1 122 ISGLDQLA 129
                      *****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 994.41
//
Query:       KIR63396.1  [L=851]
Description: aminopeptidase N [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-58  196.0   2.0    1.1e-57  195.1   2.0    1.4  1  Peptidase_M1    Peptidase family M1 domain
    1.7e-52  178.9   6.7    2.7e-52  178.3   6.7    1.3  1  ERAP1_C         ERAP1-like C-terminal domain
      2e-18   67.2   0.0    4.7e-18   66.0   0.0    1.7  2  Peptidase_M1_N  Peptidase M1 N-terminal domain
  ------ inclusion threshold ------
      0.096   12.8   0.0       0.17   11.9   0.0    1.3  1  WLM             WLM domain


Domain annotation for each model (and alignments):
>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.1   2.0   2.5e-61   1.1e-57       6     218 .]     234     445 ..     231     445 .. 0.96

  Alignments for each domain:
  == domain 1  score: 195.1 bits;  conditional E-value: 2.5e-61
                   HHHHHHHHHHHHTS--SSSEEEEEEESSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHHHHHHHH CS
  Peptidase_M1   6 tkkllefleeyfkvpYplpkldlvalpdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnEGfatyl 102
                   tk+ ++f++e+f+v Yplpk+d++ +pdf+agAMEn+g++t+ e++ ++ +++++  ++++ a++i HElaH+WfG+lVtm+wW+dlwLnE+fa+++
    KIR63396.1 234 TKQGFDFFHEQFGVRYPLPKYDQLWVPDFNAGAMENFGCVTHAESHYIFRSQVTDF-EYEQRANTILHELAHMWFGDLVTMRWWNDLWLNESFAEWA 329
                   78889*********************************************666655.66777999******************************** PP

                   HHHHHHHHSCCCHCHHHHHHHCHHHHHHHHTSTTHHHSSGG-GSHHHHHHTSSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHCTTEEE-HHHH CS
  Peptidase_M1 103 eylildklepewevseqllleeveealsedaldeshpitqevekpseidevFdsiaYeKGasllrmlekllgeevFqkglksYlkefkyknaetedl 199
                   +  +  ++    + ++++l  + +    +d+l+++hp+  e+ + + ++  Fd i+Y+KGas+l+ l +++gee F  gl++Y+ +++ +na+ +dl
    KIR63396.1 330 SHWCNANATRFSDAWTTFLSIRKNWGYRQDQLSSTHPVYCEMPDLEAVEVNFDGITYAKGASVLKQLVAYVGEEPFLAGLRAYFGKHAWGNATFDDL 426
                   *9999999999999****99999999*********************************************************************** PP

                   HHHHHHCCCSCHHTHHHHH CS
  Peptidase_M1 200 wdaleealnkdisevmdtw 218
                   ++ le a++ +++++  +w
    KIR63396.1 427 LSELEAASGRELRKFAAQW 445
                   ***************9999 PP

>> ERAP1_C  ERAP1-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.3   6.7   6.1e-56   2.7e-52       2     314 ..     528     838 ..     527     839 .. 0.86

  Alignments for each domain:
  == domain 1  score: 178.3 bits;  conditional E-value: 6.1e-56
                 EEESGGG-SSSEEEE-HHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHGGG..GGGG--SHHHHHHHHHHHHH.HHHHHTTSTTHHH CS
     ERAP1_C   2 vllNdddtGyyrVnYdeeslaalleqllskklspldRaglisdafalaragelsaadlldlll.gylanEtdylvwsqalsqlat.lksllsadplyaa 98 
                 +llNddd++y++ ++de+s+a++++ ++ ++ s+l Ra+++ +a++++r++elsa+d+l+l+l g+ ++Etd+ ++++ l+q      +l+ adp   a
  KIR63396.1 528 LLLNDDDLTYAKLRLDERSMATVVQ-HIAGFESSLSRALCWMAAWDMVRDAELSARDYLALVLaGL-PAETDINLVTATLRQSVVtTLNLY-ADP---A 620
                 69***********************.999**********************************999.9*******9998887766367788.999...6 PP

                 HHHH.HHHHHHHHHHHHHH.T.TTS-HHHHHHHHHHHHHHHTT.-HHHHHHHHHHHHHHHCSTT....-.S-HHHHHHHHHHHHHHS..-HHHHHHHHH CS
     ERAP1_C  99 lkaf.lrklleplaeklgw.epgeshldaqlrslllsaacaag.dpevveearklfkawlegdd....l.ippdlrwavycalaang..geaewdalle 187
                 ++   +++l+ ++ + l+  epg     + l+ ++ +a+++a+ ++e ++++    ++wl+g d    l i+++lrw+++++l+++g  g+ae++a+l+
  KIR63396.1 621 WAPSgWAELARAAKATLATaEPG-----SGLQLAWARAYVQASrSAEDLAAV----RGWLNGVDvpagLaIDTELRWVILQSLVSKGvgGPAEIEAELA 710
                 77554555555555566543677.....778878888888666244444555....56665555555655****************999*********9 PP

                 HHHC-SSHHHHHHHHHHHCC-S-HHHHHHHHHHCTTT..S-GGGHHHHHHHH.HSTTHHHHHH.HHHHHCHCCHHHHTS..STSCHHHHHHHHHTT--. CS
     ERAP1_C 188 rykdtsapsekeaalralaatpdpellerllnfvlesdevrnqdlrallaglannpegrellw.efvkenwdalakrws..ggeildrivkgllpgft. 282
                    d +a s+++ a++a a +p+pe +++++++++  d+++n   rall+g+   p+ + +l  ++ +++++ ++++w+  ++e ++ +v+ ++p  + 
  KIR63396.1 711 G--DRTA-SGEREAAYAHALVPTPENKAAVWAQLTGPDALPNWRNRALLQGF--APAVQAELVaPYRERYFEVVDQVWAqrDSEPAQEFVQLAYPTQQv 804
                 9..***9.**************************87999*************..7777776666**************743478***********7777 PP

                 SHHHHHHHHHHHCHT..T--GGGHHHHHHHHHHH CS
     ERAP1_C 283 seeelaeieaffadk..dtpglrrtlkqaletvr 314
                 se+++a+++a++a+   ++++lrr +++++++v 
  KIR63396.1 805 SEDTVAATDAWLAAAgdKPASLRRLVAEGRDAVV 838
                 ************8888569************986 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   1.1e-21   4.7e-18      92     186 .]     103     193 ..      21     193 .. 0.89
   2 ?   -3.3   0.0         2   8.9e+03      30      50 ..     523     543 ..     506     553 .. 0.70

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 1.1e-21
                     EEEE-BSSSSEEEEEEEEETSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTSEEEESSECCCEEEETTCEEEEEEEEEESBEGGG CS
  Peptidase_M1_N  92 yegelndklaGlykstYtdkgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkeetalSnmpeeeseklengqkiteFeqtpkmstYL 186
                     +   ++++ +Gl ++  + +ge+  ++ +qfe +dA ++f CfD+P+ K+ +t   ++p++  ++Snmp+ ++e+ ++g k ++F+q+ +mstY+
      KIR63396.1 103 F--AYSNSGQGLHRTVDPVDGET--YLYSQFETADAQKVFACFDQPDLKSVYTWHATVPEHWRVVSNMPVAREEPAGEGLKAVHFAQSARMSTYI 193
                     4..35889999999876668887..99*******************************************************************6 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2
                     S-ECEEEEEESSEEEECEEEE CS
  Peptidase_M1_N  30 eatseivldakdlkiksvsls 50 
                      a++++ l+++dl++ ++ l 
      KIR63396.1 523 RAADVLLLNDDDLTYAKLRLD 543
                     7889999******99666554 PP

>> WLM  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.8e-05      0.17      79      98 ..     290     309 ..     283     317 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.8e-05
         WLM  79 pyesimgtllHELaHnvygp 98 
                 +ye+  +t+lHELaH+++g+
  KIR63396.1 290 EYEQRANTILHELAHMWFGD 309
                 789999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 5474.14
//
Query:       KIR63397.1  [L=207]
Description: DSBA oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-06   27.4   0.4    8.4e-05   22.4   0.4    2.1  1  DSBA      DSBA-like thioredoxin domain
  ------ inclusion threshold ------
      0.063   13.2   0.0       0.16   11.9   0.0    1.7  2  UBA       UBA/TS-N domain


Domain annotation for each model (and alignments):
>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.4   9.3e-09   8.4e-05       2     160 ..       7     138 ..       6     167 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 9.3e-09
                 EEEEEBTTBHHHHHHHHHHHHHHHHCCTEEEEEEE-SSSCHHHHCT.S.GGGSHHHHHHHHHHHHHHHHHHT....GGSSHHHHHHHHHHHHHHHHHHH CS
        DSBA   2 vdeffDvlCPyCylgkerleklaarspdvkvvlrpfelagakkasgnvgpselpeklkylledlkrlaeaegiplrfpkdklknstraarlllaagaeg 100
                 vd++fD +CP+ ++ ++ l ++++ + dv v+++ ++l       ++    ++pe++++ll+                     +     r+ +a+++++
  KIR63397.1   7 VDMWFDPICPWAWVTSRWLLEVEQVR-DVDVRFHVMSLSVL---NEGR---DVPEQYQQLLQ---------------------AGWGPVRVCVAVQRQH 77 
                 9*************************.99999999999887...2233...35555555533.....................4556667777777776 PP

                 GHHHHHHHHHHHHHTS....SS-TSSHHHHHHHHHHTTS.HHHHHHHHTSHHHHHHHHHHHHHH CS
        DSBA 101 laekvvrelfealwse....gqaitddqellevaekaGldaeeldealeseavkeavrentaaa 160
                    ++vr+l+ al ++    ++++++d   ++++ +aGl   el+ a +s ++ ea+r +++a+
  KIR63397.1  78 -GPDAVRALYTALGTRihlgKEELGRD-LYVAALADAGL-GPELADAADSTDYDEALRASHEAG 138
                 .44666666666554311113333333.36667777777.446667777777777777776665 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.8e-05      0.16       3      35 ..      53      86 ..      52      87 .. 0.95
   2 ?   -2.7   0.0      0.66   5.9e+03      21      26 ..     129     134 ..     129     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.8e-05
                HHHHHHHHHTTS-HHHHHHHHHHTTT.SHHHHHH CS
         UBA  3 eeaiqrLveMGFdreevveALratgn.NeErAve 35
                +e++q+L++ G+ + +v+ A  + ++ +  rA++
  KIR63397.1 53 PEQYQQLLQAGWGPVRVCVAVQRQHGpDAVRALY 86
                699**************************99987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.66
                 HHHHHT CS
         UBA  21 eALrat 26 
                 eALra+
  KIR63397.1 129 EALRAS 134
                 79**97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1597.45
//
Query:       KIR63398.1  [L=399]
Description: hypothetical protein TK50_21495 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-49  167.9   0.0    7.5e-49  166.6   0.0    1.5  1  DUF1015         Protein of unknown function (DUF1015)
  ------ inclusion threshold ------
      0.072   13.0   0.0       0.47   10.4   0.0    2.3  2  MazE_antitoxin  Antidote-toxin recognition MazE, bacterial an


Domain annotation for each model (and alignments):
>> DUF1015  Protein of unknown function (DUF1015)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.6   0.0   8.4e-53   7.5e-49      20     392 ..      19     394 ..      16     396 .. 0.85

  Alignments for each domain:
  == domain 1  score: 166.6 bits;  conditional E-value: 8.4e-53
     DUF1015  20 sppYD.viseeearelakknpysflrlilpeadledeedeed...ryekaaetleewleegvlvqdekpalyvyeqtfedggrvrrGlvaavsledyee 114
                 ++ YD   +++e  +++++np+s+l +++p   +e+  +  +       a  +l+e +++g   + +++ +++y+ +   g+ + +G++a+v+ ++ + 
  KIR63398.1  19 AQNYDeFADDAEITAIIEANPHSALGIEMPHRAPESLGK--SfldALPDAVTRLAEAKADGSY-TPAEQVVVLYRISAP-GEETAYGMFAMVDTDQIST 113
                 5789978899999*****************998886544..23579*****************.888999*****9987.5***************555 PP

     DUF1015 115 gv.....IlpHEkTlaekeedRlkllratkanlepifllyrdpe.eieelieelkkkeeeplydfttdedgvrhrlwaitdpeaiekiaealadkklyI 207
                  +     + + E+++ +k+++R++l +a+   l+p++ll  +++ e+++ ++++++++ +p + ++td+ g +h +w +    + +++++     +l++
  KIR63398.1 114 SAdepglVIRNEDVFIAKVRERVALAEALGHLLSPVLLLQTGRGdELHAALAAATETAGAPAA-TDTDQAGRTHAVWLLGPGPEQDALTALAGGGELVV 211
                 5555666*************************************9*********777777755.55999****************************** PP

     DUF1015 208 ADGHHRyatalavreerkaeeeaatgeepanyflavlvnledpgLkilpihRvvkdlnglseeelleklaeaf.ev..............apfglylkd 291
                 ADG+HR  +a   +                  flav++   +  + i p++R+v++l +++++ell++l++a  ev              + ++l l+d
  KIR63398.1 212 ADGNHRSLAAQTGG---------------LPRFLAVVTTPAS--VAIQPYNRLVSEL-TVTPAELLDRLRAAGaEVepidgpvevptaggT-VALRLPD 291
                 ******99987777...............2358888888888..8***********8.78**********964266555543333332221.4444444 PP

     DUF1015 292 gkwyklltlkdka....vrsLdvsvlqelllepilgiedprkderidyvhg...leeavekvdsgeagvafllnptsveelfavadagevmPrKSTyfe 383
                 +  y  ++l++      +++Ld+++++++ll++ lg++    d+ri+yv+g   ++ ++ +v++g+a++a+l+ p++v+++ av  a e+mPrKST+f+
  KIR63398.1 292 Q-GYA-VRLPH-VdggrLENLDHALVERVLLRDALGLDP--GDKRITYVGGdypASWLTGEVEAGRAELAVLIAPVTVDDFVAVNLAREKMPRKSTWFT 385
                 4.222.22233.13456********************76..5************9******************************************** PP

     DUF1015 384 PKlrsGlvl 392
                 PK r Glv+
  KIR63398.1 386 PKARGGLVV 394
                 *******98 PP

>> MazE_antitoxin  Antidote-toxin recognition MazE, bacterial antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.25   2.2e+03       7      13 ..     294     300 ..     294     300 .. 0.89
   2 ?   10.4   0.0   5.3e-05      0.47      15      38 ..     319     344 ..     319     345 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.25
                     EEEEE-C CS
  MazE_antitoxin   7 gavriPk 13 
                     +avr+P+
      KIR63398.1 294 YAVRLPH 300
                     8*****5 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 5.3e-05
                     CHHHCCEECTCEEEEEECTT..CCCC CS
  MazE_antitoxin  15 vrfelgireGdevelevdgd..kiil 38 
                     +r++lg+++Gd+ + +v gd   ++l
      KIR63398.1 319 LRDALGLDPGDKRITYVGGDypASWL 344
                     699*****************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2967.62
//
Query:       KIR63399.1  [L=155]
Description: ribose 5-phosphate isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-44  150.4   0.0    3.2e-44  150.3   0.0    1.0  1  LacAB_rpiB  Ribose/Galactose Isomerase


Domain annotation for each model (and alignments):
>> LacAB_rpiB  Ribose/Galactose Isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.3   0.0   1.8e-48   3.2e-44       1     139 []       3     142 ..       3     142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.3 bits;  conditional E-value: 1.8e-48
                 EEEEE-GCGHHHHHHHHHHHHHTTTEEEEECESS.SS---HHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHHHTT- CS
  LacAB_rpiB   1 iaigsDhagfelkekikeyLkekghevidvgtes.eesvdYpdfakkvaeavasgeadlgiliCgtGiGmsiaaNkvkgiraalchdeesAklarehnn 98 
                 +++gsDhagfelk +++++L+++g+ev+dvg++  + ++dYp f+ + +++v +   +lg++i g+G+G +iaaNkv g+raal+++ ++A+l rehn+
  KIR63399.1   3 VYLGSDHAGFELKVHLASHLAKQGYEVVDVGPHVfDPDDDYPAFCLHTGTRVVADPGSLGVVIGGSGNGEQIAANKVAGVRAALAWNIDTAQLGREHND 101
                 79******************999********999988************************************************************** PP

                 -SEEEEETTTS-HHHHHHHHHHHHHS---.HTHHHHHHHHH CS
  LacAB_rpiB  99 anvlalGarvigeelakeivkaFletefeeggrharrvdki 139
                 an++a Gar ++ ++a++iv+aFl+t+f+ + rharr++++
  KIR63399.1 102 ANIVAVGARQHTLDEATAIVEAFLTTSFSGNPRHARRIEQV 142
                 ****************************7555******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1291.21
//
Query:       KIR63400.1  [L=108]
Description: hypothetical protein TK50_21505 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 800.83
//
Query:       KIR63401.1  [L=410]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-31  107.0   0.0    1.2e-30  106.2   0.0    1.4  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    1.5e-21   77.4   4.8    1.8e-21   77.1   3.4    1.9  2  Acetyltransf_17  Acetyltransferase (GNAT) domain
    9.5e-19   67.7   0.0    2.5e-18   66.4   0.0    1.7  1  SCP2_2           Sterol carrier protein domain
    2.1e-05   24.7   0.0    3.8e-05   23.9   0.0    1.4  1  Acetyltransf_1   Acetyltransferase (GNAT) family
     0.0005   20.0   0.0      0.001   19.0   0.0    1.5  1  FR47             FR47-like protein
     0.0037   17.7   0.0     0.0068   16.8   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.046   13.7   0.0      0.072   13.0   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.0   4.7e-34   1.2e-30       9     127 ..      15     132 ..       8     133 .. 0.96

  Alignments for each domain:
  == domain 1  score: 106.2 bits;  conditional E-value: 4.7e-34
                     GHHHHHHHHHHHTT----H..HHHHHHHHHHTTSEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHH CS
  Acetyltransf_9   9 dldevlellkyaFqdeespleeireyfrklleesrvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLlaraleemr 103
                      +de ++l++ aF+ + ++  e re+ r + e++r l+++d+ +lv++++++++el+vpG+ ++aa vt+Vav p+hr+rg+l++L++r+l+e+r
      KIR63401.1  15 GFDELARLFEIAFHTTLPA--ETREAERSIWEPQRSLLVFDGADLVASAGAYTRELTVPGAVVPAAHVTMVAVLPTHRRRGLLTRLMRRQLREVR 107
                     689***************9..799*********************************************************************** PP

                     HT.T--EEEE--SSHHHHHTTT-EE CS
  Acetyltransf_9 104 ee.gqplsllfPssipiYrrfGyei 127
                     +  ++p+++l++s+ +iY rfGy+ 
      KIR63401.1 108 DAgREPVAVLWASEGRIYPRFGYGL 132
                     *9779******************97 PP

>> Acetyltransf_17  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         7   1.8e+04      61      72 ..      33      44 ..      31      48 .. 0.85
   2 !   77.1   3.4     7e-25   1.8e-21       1     111 [.     183     294 ..     183     303 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 7
                     ESSHHHHHHHHH CS
  Acetyltransf_17 61 altpeayraLlr 72
                     a+t+ea+r +++
       KIR63401.1 33 AETREAERSIWE 44
                     789999999996 PP

  == domain 2  score: 77.1 bits;  conditional E-value: 7e-25
                      TEBE--HHHHHHHHHTTTTSTGCS..EEEEEE.TTSEE.TEEEEEEE..ETTE..TTCEEEEEEEEESSHHHHHHHHHHHHCGTGTESEEEEEE CS
  Acetyltransf_17   1 GaleRseawWrrrllkrrearega..layvvyrdddgp.eGyllYrv..kees.gaegtleVrelvaltpeayraLlrflashdslveeveawk 88 
                      G+ +R+++wWr++l+++ ++r+ga   ++++++++dg+ +Gy+l+r   ++++ ga+g   V+e+va+++ a+ aL+r+l+s+d l+++++  +
       KIR63401.1 183 GWSDRDDRWWRYVLGDPADQRDGAteRRVLLHEAPDGEvDGYALWRSrlSQDAaGACGVTIVDEVVAENATARLALWRLLLSLD-LTRRLS-YR 274
                      99**********99998876344456*********9999********66333347777888***********************.******.** PP

                      ESTT-SCGGGCSSGG.EECEEEE CS
  Acetyltransf_17  89 appddplpllledprikeaarpg 111
                      +p+ddpl +l+++pr   +++p+
       KIR63401.1 275 GPVDDPLLRLVNEPR---RLEPR 294
                      ***************...66653 PP

>> SCP2_2  Sterol carrier protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   9.6e-22   2.5e-18       1     100 [.     306     403 ..     306     405 .. 0.84

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 9.6e-22
                 HHHHHHHS--SS-SSEEEEEEEE-TTSGGGSEEEEEEEETTSEE..EECSCE-SCE.EEEEHHHHHHHHTTSS-HHHHHHTTSSB.SSHHHHHHHHHHS CS
      SCP2_2   1 veaalearpyekeekgeltleveDpllpwnngrfrltiedgkge..evgkeeeadadltldiqtLaqlllGyrsaseLarlgrie.gaeealatldalf 96 
                 v+aal+ar+y+  ++ +++ ev+D+llp+n+gr+rlt   g++   ++  ++ a+adl++d+++L++l+lG++ +++La++gr+   ++ ala++d +f
  KIR63401.1 306 VPAALAARRYA--AAVDVVVEVTDELLPENTGRWRLT---GGPDgaRCVPTD-APADLACDVRALGELYLGGVGITTLADAGRVAeLRPGALAAADPAF 398
                 79********6..689*********************...444333666554.6669****************************75557789999999 PP

                 .-SS- CS
      SCP2_2  97 .pkek 100
                   +++
  KIR63401.1 399 sWHRA 403
                 66665 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.5e-08   3.8e-05      14      99 ..      32     117 ..      16     130 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.5e-08
                     HHHHHHHHHH.HHHHHHSTTCEEEEEEETTEEEEEEEEEEEET....TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE.EE CS
  Acetyltransf_1  14 ppnedaseee.feesfsleaegllvaeedgeliGfisllkipd....ekggvayieslaVspeyrgkGlGsaLlealeerareegikki.vl 99 
                     p    ++ e+ + ++   e+ + l++ ++  l++ ++++ +         + a++  +aV p++r++Gl ++L++  ++++r+ g + + vl
      KIR63401.1  32 P---AETREAeRSIW---EPQRSLLVFDGADLVASAGAYTRELtvpgAVVPAAHVTMVAVLPTHRRRGLLTRLMRRQLREVRDAGREPVaVL 117
                     2...22222234566...6666666677778**************9966789*****************************99987665455 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.9e-07     0.001      23      79 ..      79     132 ..      74     139 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.9e-07
                 SEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  23 elgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfek 79 
                  + ++ vlp+hrrrGl +rl +   +e++ +g ++++v  as+    r+y + G+ +
  KIR63401.1  79 HVTMVAVLPTHRRRGLLTRLMRRQLREVRDAGREPVAVLWASEG---RIYPRFGYGL 132
                 5679********************************99887764...5666666655 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.7e-06    0.0068      24      74 ..      72     130 ..      45     131 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.7e-06
                     S.....TCTEEEEE-GGGTTSSHHHHHHHH..TT...SEEEEE.EEEE..THHHHHHHHHHTTE CS
  Acetyltransf_7  24 d.....aeitrlaVdpeyrgkGiGraLlea..ae...kgiile.qlel..naekaikfYeklGF 74 
                     +     a+ t +aV+p +r++G+ ++L++   +e    g + e ++ l  ++    + Y ++G+
      KIR63401.1  72 GavvpaAHVTMVAVLPTHRRRGLLTRLMRRqlREvrdAG-R-EpVAVLwaSE---GRIYPRFGY 130
                     04444457777*****************94232243434.2.3333332133...569999987 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.8e-05     0.072      34      86 ..      49     112 ..      24     131 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.8e-05
  Acetyltransf_10  34 lvaeeggkivGvielrdgs...........hisllfVdpeyrgqGigkaLleaveeeaekdgik 86 
                      l++++g  +v  ++ ++++           h+++++V p +r++G+ ++L+ + ++e++++g +
       KIR63401.1  49 LLVFDGADLVASAGAYTREltvpgavvpaaHVTMVAVLPTHRRRGLLTRLMRRQLREVRDAGRE 112
                      455566666655555444446777788888***********************99999776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3212.60
//
Query:       KIR63402.1  [L=187]
Description: hypothetical protein TK50_21515 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.2    9.1   4.5          1   10.2   1.9    1.6  2  DUF4282   Domain of unknown function (DUF4282)


Domain annotation for each model (and alignments):
>> DUF4282  Domain of unknown function (DUF4282)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.9   5.6e-05         1      20      80 ..      93     151 ..      91     159 .. 0.85
   2 ?   -1.1   0.0      0.19   3.3e+03      12      36 ..     157     181 ..     151     185 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 5.6e-05
     DUF4282  20 givlialvllslivgafaalseslsagggllllllaviafllmilllRivlEfliaifria 80 
                 g++++ + + ++ +++  +l  + +++ +ll+ll+a   f l  ll R+vlE  +  +r +
  KIR63402.1  93 GALFAFVCWGIWAISGRGNL--GAPVLTFLLSLLVAAGLFGLSRLLGRVVLERQLGRVRRS 151
                 67788888889999999999..9*****************************877766655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.19
     DUF4282  12 llkvlYilgivlialvllslivgaf 36 
                 l+  ++++g+ ++ l    ++v+a+
  KIR63402.1 157 LVTAVFLVGLGVAYLQQTEWVVSAW 181
                 4555666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1386.61
//
Query:       KIR63403.1  [L=626]
Description: propionyl-CoA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-88  295.9   0.0    4.9e-88  295.5   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    3.7e-25   88.7   3.5    7.8e-25   87.7   3.5    1.6  1  AMP-binding_C  AMP-binding enzyme C-terminal domain
    3.1e-22   78.3   0.1    8.4e-22   76.9   0.0    1.8  2  ACAS_N         Acetyl-coenzyme A synthetase N-terminus


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.5   0.0   8.2e-92   4.9e-88       3     422 ..      62     501 ..      60     502 .. 0.86

  Alignments for each domain:
  == domain 1  score: 295.5 bits;  conditional E-value: 8.2e-92
                  HHHHHSTTSEEEEE....CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTES CS
  AMP-binding   3 eqaaktpdkvalvd....sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseak 96 
                  + aa + d++al+     +g  +t+TY+el+++++r+A +Lr+lGv++gdrV+++l + pe vva+la++++Gav++++  ++ a+ela  ++d+++k
   KIR63403.1  62 HVAAGRGDQPALIHdspvTGVTRTYTYAELRDATTRFAGALRRLGVGRGDRVLLYLAMVPEAVVAMLACARIGAVHSVVFGGFAAHELAVRIDDARPK 159
                  5788899*****9999**999***************************************************************************** PP

                  EEE.........E..TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS..-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEH CS
  AMP-binding  97 vli.........a..tvdselleklleaaakleavklvivldadellkeeelkeeeeseekae..kpeeeeelkpddlayiiYTSGTTGkPKGVmlsh 181
                  v++         +   ++ +l ++l+ea+   +a++ ++++++ + +   +   + ++e++ +  +p + +++ + d++y++YTSGTTG+PKGV+   
   KIR63403.1 160 VVVatscgievdRivPYHPILDAALAEAE---HAPQRCVIVQRPQHPAPLTPGRDVSWEDALDgaEPADCVPVAATDPLYVLYTSGTTGRPKGVVRDN 254
                  ***99988876523433334444444444...4556677788777777766666666665552566778889************************** PP

                  .HHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CH.HHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCH CS
  AMP-binding 182 .rnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaa.ld.pklllelieklkvtviagvPrvleallesgalkaa 276
                   + +va  +s  + + f+++++dv+++  ++ +++g+++ ++++ll Gat vl+++++  ++ ++++++++++++v  ++++P++++a+ ++++  + 
   KIR63403.1 255 gGHAVALRWS--MANVFDIGPGDVFWAASDVGWVVGHSYIVYGPLLTGATTVLYEGKPVgTPdAGAFWRVVSQHRVAALFTAPTAIRAIRRQDPDGTR 350
                  5555555444..67788999*************************************99977799999*********************995434356 PP

                  HHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-B...EE-TTEEEEEE-TTTSCBEETTSEEEEEEEE CS
  AMP-binding 277 kkakdlsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvG...kplpgvevkivDeetgepvpdgeeGellvrg 371
                   +++dl slr+++l+ge+l p++  ++ a++g +v++ +++TEt+  v+  ++++ ++ + ++G    p+pg +v++vD   ge vp g+ G +++r 
   KIR63403.1 351 IRRYDLTSLRTLFLAGERLDPDTFAWAGARLGVPVVDNWWQTETGWPVAA-NPRGLEPLPIKAGspsVPVPGYDVRVVDSR-GEQVPAGVDGSIVIRL 446
                  7778*******************************************984.334444444444433399**********98.***************9 PP

                  T...TS-SEBTT-HHHHHHHEEET.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 372 p...gvmkgYlkkpeataeafdse.grwlrTGDlgrldedGyleivgRkkdlikl 422
                  p   g  +  ++++e+  +++ s  ++++ TGD gr+d+dGyl+++gR++d+i++
   KIR63403.1 447 PlppGCLPTLWGDDERYVRSYLSTfDGYYLTGDGGRFDADGYLYVMGRTDDVINV 501
                  87789****************975778**************************97 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   3.5   1.3e-28   7.8e-25       2      76 .]     511     589 ..     510     589 .. 0.94

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 1.3e-28
                    HHHHHHSSTTEEEEEEE-----TTS---EEEEEE---..---..HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg..sea..leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    +E++l+ hpaVae+aV+Gv d++kG+++ ++Vvlk+g  +e+  l++eL+a vr+++gp+a++++v +v++lpktrsGK
     KIR63403.1 511 MEEVLAGHPAVAECAVIGVADALKGQVPSGYVVLKAGveVEPdaLAAELVALVRERIGPVAAFRRVTVVPALPKTRSGK 589
                    7**********************************996423367**********************************9 PP

>> ACAS_N  Acetyl-coenzyme A synthetase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   1.4e-25   8.4e-22       1      55 []       4      58 ..       4      58 .. 0.99
   2 ?   -2.8   0.0       1.1   6.5e+03      12      22 ..     316     326 ..     314     345 .. 0.67

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 1.4e-25
                HHHHHHHHHH-HHHHHHHHHCCS--SB--S-SECSTTTCT-EESTT-EE-HHHHH CS
      ACAS_N  1 ykelykeSiedpeaFWaeqakeldWekpfdkvldgskgpfikWFeGGklNicyNc 55
                y++ y++Si+dp +FW+++a+e+dW++p++++ld++ +p ++WF++G+lN+c+N+
  KIR63403.1  4 YRAAYERSIADPTGFWRDAAAEIDWHRPPQRILDDTRAPLYRWFPDGELNTCHNA 58
                99****************************************************7 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.1
                 HHHHHHHHHCC CS
      ACAS_N  12 peaFWaeqake 22 
                   aFW+ + ++
  KIR63403.1 316 AGAFWRVVSQH 326
                 579**988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4373.32
//
Query:       KIR63404.1  [L=888]
Description: heat shock protein Hsp70 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-23   81.6   0.0    4.2e-22   78.1   0.0    2.1  2  HSP70     Hsp70 protein
    4.6e-08   32.9   7.0    4.6e-08   32.9   7.0    2.6  3  PQQ_2     PQQ-like domain
    0.00012   21.8   0.1       0.16   11.9   0.0    3.6  3  PQQ       PQQ enzyme repeat
      0.002   17.0   1.4        0.2   10.4   0.0    3.0  2  MreB_Mbl  MreB/Mbl protein


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.018        82       2      59 ..      10      68 ..       9      79 .. 0.70
   2 !   78.1   0.0   9.3e-26   4.2e-22     101     368 ..      83     372 ..      71     375 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.018
                EEEEEXSSEEEEEEEE..TTEEEEEXXTTSXSSEESEEEEXTT.SEEETHHHHHCTTTTGG CS
       HSP70  2 iGiDLGttnsvvavme..ggkievianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpk 59
                +G+DLGt n+ vav++  +g+++ +    g+ + Ps v  + +    vG+ A+r a  +p 
  KIR63404.1 10 LGVDLGTSNT-VAVLRwpDGRTRPLL-VDGQPVVPSGVYADTDgRLHVGRDARRLAQADPG 68
                8******996.788763233333332.3588999999988888445699999998887775 PP

  == domain 2  score: 78.1 bits;  conditional E-value: 9.3e-26
                 EEETTEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEE.............EEEEEHHHHHHHHHHTCCSS... CS
       HSP70 101 veaagekftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnv.............lRivNepTAaalaYGldkkd... 183
                 v+  +++++p ++ a++L+ + + a a +g  +  av+t+Pa +++a Rq  +dA   AG                 R++ ep Aaa  Y    +    
  KIR63404.1  83 VALGDREYAPADLLAAILHAVGQAAVAAVGF-LPPAVLTCPASWDEARRQVLADALLRAGWPQaaehtlsgptppgTRLLREPVAAARYYAQVLRRpvp 180
                 444566***********************98.9**********************9999974322222222333347**********999866666678 PP

                 SCEEEEEEEEXSSXEEEEEEEEE......TTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHH...............HHHHHH CS
       HSP70 184 kernvlvyDlGggtfdvSilele......kGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqr...............lkeaae 261
                     ++v+DlGggt dv +l+ e      +  f v aT g  +lGG d D+alv  l e++  +       d++++qr               l e + 
  KIR63404.1 181 VGGSIAVFDLGGGTLDVAVLRNEgadpwgDSGFTVTATGGVPDLGGLDLDAALVARLGERVSAT-------DPQVWQRltrpadaprwrdrhqLWEGVR 272
                 899*****************965333322558***********************999998765.......4444444000000000000011555555 PP

                 HHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHT CS
       HSP70 262 kaKkeLSsskqteinleietvdedgkdlseklsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnp 360
                 +a+  LS   +t +++        g    ++l+R+  e ++++ll+r +  ++++++ a+l+ + +  + lvGG tR+P v  +++  +g  p+   +p
  KIR63404.1 273 EAREMLSR--ATVAPVV-----VPGLPAVVELTREDVEGVAAPLLARAVAETRRVIAAAGLTPDRLAGLFLVGGPTRMPLVARMLHAELGVAPTVLEQP 364
                 55555555..3444333.....34666699*******************************************************99999888877777 PP

                 TTHHHHHH CS
       HSP70 361 DeavaiGA 368
                    va GA
  KIR63404.1 365 ELPVAEGA 372
                 77788887 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   7.0     1e-11   4.6e-08       4     107 ..     511     617 ..     506     653 .. 0.76
   2 !   13.8   0.6     7e-06     0.031     124     227 ..     589     714 ..     575     734 .. 0.71
   3 ?   -0.5   0.2      0.17   7.4e+02     127     127 ..     747     747 ..     649     842 .. 0.57

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1e-11
       PQQ_2   4 vvsaldaatGaelWrv...dlarplgggvsravlsggtlfva.....tgggrlvaldaatGkvlWettlegpvvgaplvaegrvvvvasdgqlialdae 94 
                 +++a+da tG++ Wr+     a+++++ v  av +g + +       +  ++lv  daa+G+++W+++     + + +  +  v+v + +++l++l  +
  KIR63404.1 511 EIVAVDAGTGRTRWRKqttQTAQQWDALV--AV-PGAVAAFSdpigvDAPRELVVRDAASGEQRWSRSMGDDDRVI-FGRDVAVLVDTTGNRLVGLRMR 605
                 689*************5432234789999..99.66666666488888********************97773444.77777777777999******** PP

       PQQ_2  95 dGkrlWstqqrse 107
                 dG+++W  q++  
  KIR63404.1 606 DGNQVWA-QDNPR 617
                 *******.77762 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 7e-06
       PQQ_2 124 tvvvgessgklvaldpkdGkvlWerelaaprgtsels.....rvgdisgrpvva........eg...tVyassgqgrllal.dlatgr..rlwske.is 202
                  v+v +++++lv+l+ +dG+++W +   +++ +++ s     ++   +g p  a        +g   ++  ++ + + + l dl +g   r w  + ++
  KIR63404.1 589 AVLVDTTGNRLVGLRMRDGNQVWAQDNPRDSSGNAHSavlpvETAEAAGGPAYAdgtprdpwRGkadRLVQIGADRS-ARLiDLVEGTvlRSW--PaVA 684
                 245555699******************88888888777888888888888888877777777224556666666664.444588888854446..4477 PP

       PQQ_2 203 singlpildgdllyvvsa.....geliald 227
                       ++ +d lyvv++      +l+ +d
  KIR63404.1 685 DLDDPMVARDDRLYVVDDagvggYRLLGYD 714
                 777767777788888875477655555555 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.17
       PQQ_2 127 v 127
                 +
  KIR63404.1 747 L 747
                 1 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   3.6e-05      0.16      12      31 ..     512     531 ..     506     534 .. 0.91
   2 ?    3.3   0.0     0.019        87      11      28 ..     559     576 ..     551     584 .. 0.76
   3 ?    1.8   0.0     0.058   2.6e+02       6      28 ..     592     615 ..     587     621 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.6e-05
                 EEEEETTTCCEEEEEESSSC CS
         PQQ  12 lyAlDadTGkvlWrfktggp 31 
                 ++A+Da TG+ +Wr++t + 
  KIR63404.1 512 IVAVDAGTGRTRWRKQTTQT 531
                 89**************9875 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.019
                 EEEEEETTTCCEEEEEES CS
         PQQ  11 ylyAlDadTGkvlWrfkt 28 
                  l+  Da++G+ +W+   
  KIR63404.1 559 ELVVRDAASGEQRWSRSM 576
                 57778*********9765 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.058
                 E.ETTSEEEEEETTTCCEEEEEES CS
         PQQ   6 g.sadGylyAlDadTGkvlWrfkt 28 
                   + +++l+ l +++G+ +W  ++
  KIR63404.1 592 VdTTGNRLVGLRMRDGNQVWAQDN 615
                 55677888888899******9887 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.2    0.0061        27     146     163 ..     184     201 ..       8     205 .. 0.60
   2 !   10.4   0.0   4.4e-05       0.2     227     316 ..     287     373 ..     275     379 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0061
                 -EEEEEE-SS-EEEEEEE CS
    MreB_Mbl 146 gnmvvdiGggttevavis 163
                 +  v d+Gggt +vav+ 
  KIR63404.1 184 SIAVFDLGGGTLDVAVLR 201
                 334778888888888875 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 4.4e-05
                 TTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHH CS
    MreB_Mbl 227 lvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglpvkvaedpltcvakGtg 316
                 +v glp  ve++ e+v+ + +  +++ v + ++v+ +  + L+ d +  g++l+GG + +  + ++l+ e+g+  +v e+p   va+G+ 
  KIR63404.1 287 VVPGLPAVVELTREDVEGVAAPLLARAVAETRRVIAA--AGLTPDRL-AGLFLVGGPTRMPLVARMLHAELGVAPTVLEQPELPVAEGAL 373
                 688******************************9975..57888866.59**************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.48
# Mc/sec: 5524.01
//
Query:       KIR63405.1  [L=254]
Description: quercetin 2,3-dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-31  108.8   1.2    1.9e-31  108.2   1.2    1.2  1  Pirin      Pirin
    9.8e-06   25.7   0.0    2.2e-05   24.5   0.0    1.6  1  Pirin_C_2  Quercetinase C-terminal cupin domain


Domain annotation for each model (and alignments):
>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   1.2   2.1e-35   1.9e-31      10     108 .]      20     133 ..      11     133 .. 0.93

  Alignments for each domain:
  == domain 1  score: 108.2 bits;  conditional E-value: 2.1e-35
                 C..TTCCEECTCEECCEEESS.S.ETT.....EEEE..T-EEEEEEEBSEEEEEEEECSEEEEEETTS-EEEEETT-EEEEE-TT-EEEEEEE-SS... CS
       Pirin  10 k.aaelqsvdpFlfldefdpaelevge.....edvi..gagfpphphrgletvtylleGevehrDslGnkgvirpGdvqwmtAgsGivhsEmneee... 97 
                 +  a+l+s ++F+f ++ +p+++++g      +dv+  g+gf++hphr++e+vt++l G++ h+Ds+G++gvi+pG +q+m+Ag+Gi+hsE n++    
  KIR63405.1  20 TdIAWLDSKHSFSFGNHWSPDNTHHGLllvnnDDVVraGTGFETHPHRDMEIVTWVLAGSLVHQDSTGHSGVIYPGLAQRMSAGTGILHSEKNDSWrlg 118
                 3479********************99999998888899********************************************************99999 PP

                 ....SS-EEEEEEEE CS
       Pirin  98 ....eesleglqlWv 108
                     +e+++++q+Wv
  KIR63405.1 119 gerhTEPVHFVQMWV 133
                 99999*********8 PP

>> Pirin_C_2  Quercetinase C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   2.5e-09   2.2e-05      11      86 .]     173     248 ..     161     248 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2.5e-09
   Pirin_C_2  11 slkin.QdarlyaakldegesleyelaagrkaYlqvieGevevnge.slaagDGlaiedesslsltaeedaevLlfDl 86 
                 ++ i+   a lyaa+l++g+s+++  a+   + l+v +G+v+++g+  l + D++ ++ +   ++ta+e+ae+L+ ++
  KIR63405.1 173 AIRIRnRYAALYAARLQPGQSVQLPEAPY--LHLFVPRGAVTLEGSgALGTADAVRFTATGGQRVTATEPAEILVWEM 248
                 4555414599**********999988876..99**********9865899************************9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2060.85
//
Query:       KIR63406.1  [L=187]
Description: polyisoprenoid-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-48  163.2   1.6    6.6e-48  163.0   1.6    1.0  1  YceI      YceI-like domain


Domain annotation for each model (and alignments):
>> YceI  YceI-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.0   1.6   3.7e-52   6.6e-48       1     145 [.      16     182 ..      16     183 .. 0.95

  Alignments for each domain:
  == domain 1  score: 163.0 bits;  conditional E-value: 3.7e-52
                 EEE-CCC-EEEE........-EEEEECTECCEEEE..TTT..EEEEEEEEGGGEESS.HCHHHHHHCTCTT-TTT--EEEECCCCEE........EEEE CS
        YceI   1 YtldpahssvtftvkhlgvskvtGrfkkvsgelsvdeddp.essvevtidvasidtgnakrdehlksadffdvakyPtatFvstsve......akvtGd 92 
                 Yt+dp+h++++f ++h++v+kv+G f++++g++++d++dp + +v+vti+++sidt+na+rd+hl+s+df+d++++P++tFvst ++      +++tGd
  KIR63406.1  16 YTIDPSHTRIGFVARHAMVTKVRGAFNEFEGSVAFDAADPaRTDVRVTIQATSIDTRNAQRDAHLRSNDFLDMETHPEITFVSTAFRqtgedtFDLTGD 114
                 9***************************************8899*****************************************999*****88**** PP

                 EEETTEEEEEEEEEEEEEEE........CCEECEEEEEGGGGTC.........TTTC-SEEEEEEEEE CS
        YceI  93 LtikGvtkpvtlpvtvngaa........agfsatgtidrtdFGlkr.......galvgdeveleiele 145
                 Lt+kGvt+pvt+p+t++gaa        +gf++ +ti+r+d+G+++       g+lv+++++le+e+ 
  KIR63406.1 115 LTVKGVTNPVTIPFTYEGAAsdpfgnlrLGFEGAVTINRKDYGVTWnaaletgGVLVSEKITLEFEVS 182
                 *****************864567777768899********************99***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1549.47
//
Query:       KIR63407.1  [L=156]
Description: MarR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-10   40.5   1.8    2.3e-10   40.2   0.3    2.0  2  MarR_2    MarR family
    1.4e-06   28.7   0.0      3e-06   27.7   0.0    1.6  1  HTH_27    Winged helix DNA-binding domain
    4.5e-05   23.3   0.0    0.00011   22.1   0.0    1.7  2  MarR      MarR family
     0.0064   16.5   4.3      0.054   13.6   0.1    2.8  3  HTH_20    Helix-turn-helix domain
  ------ inclusion threshold ------
       0.03   14.2   0.0      0.048   13.5   0.0    1.4  1  HTH_5     Bacterial regulatory protein, arsR family
      0.047   13.5   0.0      0.085   12.7   0.0    1.4  1  HxlR      HxlR-like helix-turn-helix
      0.056   13.2   0.8        9.7    5.9   0.0    2.3  2  DUF4194   Domain of unknown function (DUF4194)


Domain annotation for each model (and alignments):
>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       3.7   9.4e+03      24      32 ..      22      30 ..      22      33 .. 0.78
   2 !   40.2   0.3     9e-14   2.3e-10       1      62 []      37      98 ..      37      98 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.7
                HHHHHHHHT CS
      MarR_2 24 vgelarrlg 32
                ++el +rlg
  KIR63407.1 22 QAELSARLG 30
                578888887 PP

  == domain 2  score: 40.2 bits;  conditional E-value: 9e-14
                TT--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2  1 lgltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                +gl+ a++ vL  L+ +p+++l++ +l r l+ ++s++s +l r++++GLv r+++p D+R+
  KIR63407.1 37 SGLSFADYGVLVQLAEAPDGRLRPFALQRDLQWEQSRLSHHLGRMQRRGLVDREECPQDARG 98
                79***********************************************************7 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.2e-09     3e-06       3      68 .]      41     107 ..      39     107 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.2e-09
      HTH_27   3 rqqalvLhlir.hrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                 + +  vL +++  +++r +  +l + l+ e+s  s  l ++ ++GLv r+++++d r  +v lT++G
  KIR63407.1  41 FADYGVLVQLAeAPDGRLRPFALQRDLQWEQSRLSHHLGRMQRRGLVDREECPQDARGAFVVLTAAG 107
                 56666777777678888888888999999************************************99 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.3e-08   0.00011       6      57 ..      44      97 ..      39      98 .. 0.91
   2 ?   -3.5   0.0       4.2   1.1e+04      34      41 ..     142     149 ..     141     149 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.3e-08
                HHHHHHHHHSTTEEHH..HHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTT CS
        MarR  6 fviLrilyeqgplsvs..eLakklgvskstvtrvldrLekkGlieRskspeDrR 57
                + +L++l+e ++ ++    L++ l+ ++s ++  l r+ ++Gl++R+ +p+D R
  KIR63407.1 44 YGVLVQLAEAPDGRLRpfALQRDLQWEQSRLSHHLGRMQRRGLVDREECPQDAR 97
                668999999999888888**********************************99 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.2
                 HHHHHHHH CS
        MarR  34 vtrvldrL 41 
                 +trv+d L
  KIR63407.1 142 ATRVVDGL 149
                 79999977 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.73   1.9e+03      37      50 ..      20      35 ..      12      39 .. 0.71
   2 !   13.6   0.1   2.1e-05     0.054      28      57 ..      61      90 ..      44      91 .. 0.86
   3 ?    3.5   0.2     0.029        75       6      34 ..     117     145 ..     112     153 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.73
                -HHH.HHHHH.HHHHH CS
      HTH_20 37 sknt.lsyHL.rvLee 50
                +++  ls +L r+L+ 
  KIR63407.1 20 RMQAeLSARLgRQLQA 35
                5555599999888865 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.1e-05
                HHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 28 selaerldlskntlsyHLrvLeeagLvevv 57
                 +l + l++ ++ ls+HL  +++ gLv+++
  KIR63407.1 61 FALQRDLQWEQSRLSHHLGRMQRRGLVDRE 90
                6799999********************987 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.029
                 HHS-HHHHHHHHHHSTCTTB-HHHHHHHH CS
      HTH_20   6 ALahPvRrrilraLaraegltaselaerl 34 
                 A  + vRr +++ L ++e + ++ +a r+
  KIR63407.1 117 AHVDTVRRLVFDQLDPDEVRALERIATRV 145
                 556789************99999999987 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.9e-05     0.048      21      46 ..      63      88 ..      46      89 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.9e-05
                HHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5 21 laeelglsqstvShHLkkLreaGLVe 46
                l ++l+  qs +ShHL ++   GLV+
  KIR63407.1 63 LQRDLQWEQSRLSHHLGRMQRRGLVD 88
                55788999****************96 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.3e-05     0.085      11      71 ..      50     109 ..      44     117 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.3e-05
                 HHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGG CS
        HxlR  11 lvellkgkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrs 71 
                 l e  +g+ R   l+r l +  q+ L+++L ++++ gl++re+ p+        lt++Gr+
  KIR63407.1  50 LAEAPDGRLRPFALQRDL-QWEQSRLSHHLGRMQRRGLVDREECPQDARGAFVVLTAAGRA 109
                 455567899999999999.899*************************99999999999997 PP

>> DUF4194  Domain of unknown function (DUF4194)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2    0.0045        12      11      33 ..       8      30 ..       1      36 [. 0.84
   2 ?    5.9   0.0    0.0038       9.7     114     146 ..      62      95 ..      55     106 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0045
     DUF4194 11 rdreaklyeallryqeavreyLa 33
                 d+++++++a+lr q++++++L 
  KIR63407.1  8 DDDQQRAWRAYLRMQAELSARLG 30
                466689**************995 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0038
     DUF4194 114 pldrdeakfkkrldaalrklkelgllrrldgd.e 146
                 +l+rd   ++ rl  +l +++++gl++r++   +
  KIR63407.1  62 ALQRDLQWEQSRLSHHLGRMQRRGLVDREECPqD 95 
                 4566777789*****************9986533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1077.44
//
Query:       KIR63408.1  [L=155]
Description: hypothetical protein TK50_21550 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0096   16.3   0.8      0.058   13.8   0.8    2.0  1  DUF732    Protein of unknown function (DUF732)


Domain annotation for each model (and alignments):
>> DUF732  Protein of unknown function (DUF732)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.8   3.3e-06     0.058       1      92 [.      22     138 ..      18     141 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.3e-06
      DUF732   1 aaaallaaalllaapAaAdsadda.Flaalnqagi.....ayg...spdaaialGkavCkkl..........dsGksaeavvaevknd...nsglsp.. 75 
                 +aaa+laa++  aa   A++ d++ +la l+++g      +++    +++ +a G a+C+ +          +    + av +++ ++   +   +p  
  KIR63408.1  22 VAAAVLAAPVTIAAVHVAHRRDEDgYLAYLKEYGDphsdaPVPvlpPAADLLAEGDAACDWMreqpyalwrtEPQYHFVAVYERYLQRvagR---PPrw 117
                 57888888899999988988888789999988888554442225546677799999999999888887777666677777777766664320...2256 PP

      DUF732  76 ....eqaaqfvgaAvsayCPe 92 
                      +++++v+ A +++CP+
  KIR63408.1 118 gtglPDINMVVAGAWAHLCPA 138
                 666689999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1056.78
//
Query:       KIR63409.1  [L=478]
Description: beta-xylosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-37  126.9  19.3    2.3e-23   82.7   3.5    3.9  3  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    2.6e-23   82.6   5.1    5.9e-23   81.5   5.1    1.6  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    1.4e-18   67.3   6.2    1.4e-18   67.3   6.2    2.0  2  Glyco_hydro_43   Glycosyl hydrolases family 43
     0.0014   18.2   0.2     0.0025   17.4   0.2    1.3  1  CDtoxinA         Cytolethal distending toxin A/C domain
  ------ inclusion threshold ------
       0.56    9.7   6.3        3.7    7.0   0.1    3.2  3  UPF0556          Uncharacterised protein family UPF0556


Domain annotation for each model (and alignments):
>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.32   1.1e+03      17      42 ..     116     144 ..     111     203 .. 0.75
   2 !   82.7   3.5   6.5e-27   2.3e-23      11      89 .]     338     417 ..     325     417 .. 0.93
   3 !   48.9   5.4   2.3e-16   8.4e-13       1      53 [.     423     474 ..     423     478 .] 0.93

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.32
                      EECTSSSEEE...ECGCCTBCTTEEEEEE CS
  RicinB_lectin_2  17 iknvasgkvL...dvaggstanganvqqw 42 
                      i n+++g+++     ++gs  n+a++   
       KIR63409.1 116 IYNASTGRYVmwmHKENGSDYNEARAAVA 144
                      77888888888887777777766655444 PP

  == domain 2  score: 82.7 bits;  conditional E-value: 6.5e-27
                      TTT.EEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  11 gdg.yytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      +++  y++++++sgkv+dv g stan+a v q+t++g+ nq+W ++d+g+g++rivn++sgk+Ldva++sta+G+n++q+
       KIR63409.1 338 NSPaFYRVTARHSGKVMDVVGYSTANNAEVKQYTWNGGGNQKWEFQDAGGGYFRIVNANSGKCLDVANASTADGANIIQY 417
                      34426********************************************99***************************98 PP

  == domain 3  score: 48.9 bits;  conditional E-value: 2.3e-16
                      CCGEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEE CS
  RicinB_lectin_2   1 anQqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWr 53 
                      +nQqW+    +++y+++++++sgk+Ldv +++t +++ +qq++c+g++nqqW 
       KIR63409.1 423 TNQQWQW-AATGDYFQLRARHSGKCLDVVNAGTGDSVDIQQYACNGGTNQQWS 474
                      69*****.46788***************************************7 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   5.1   1.6e-26   5.9e-23       2     127 .]     342     473 ..     341     473 .. 0.93

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 1.6e-26
                     EEEEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEE..TTSEEEETT..TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTT CS
  Ricin_B_lectin   2 sgeirnvasgkCLdvegeska.gapvglydChgskgkQlwtlt..kdgeirska.qselCldvs..staegakvvlakChkgkgnqrWefdkdgt 90 
                     +++++ ++sgk +dv g s+a +a+v++y+ +g+++ Q+w+++  + g +r+++ +s++Cldv   sta+ga++++++C  +++nq+W+    g+
      KIR63409.1 342 FYRVTARHSGKVMDVVGYSTAnNAEVKQYTWNGGGN-QKWEFQdaGGGYFRIVNaNSGKCLDVAnaSTADGANIIQYTCG-SGTNQQWQWAATGD 434
                     5688899***************************77.******766699**9999************************8.778*****999998 PP

                     E..EEETTTSEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  91 q..irhkksgkCLdvkgasksne.klilkkcdsgsdsQkW 127
                        +r ++sgkCLdv +a+++++ ++++++c +g ++Q+W
      KIR63409.1 435 YfqLRARHSGKCLDVVNAGTGDSvDIQQYAC-NGGTNQQW 473
                     77799999**************999999999.******** PP

>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   6.2   3.8e-22   1.4e-18      15     225 ..      56     260 ..      52     287 .. 0.82
   2 ?    0.8   0.2     0.069   2.5e+02      25     104 ..     335     410 ..     324     429 .. 0.80

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 3.8e-22
                     EEEETTCEEEEEEE...BTEESEEEEEEESSSSSCEEEEECEESTTTCSTTTEECTEEEEEE..EETTEEEEEEEEEETTC.CCSEEEEEEESST CS
  Glyco_hydro_43  15 ilrvgedyYlvtst...fewfpglrifhSkdLvnWkqvgrvlerrsqlsmkgknasWAPeis..khdgkyylyytatkkge.akqgifvvtadsp 103
                     +l+vg+ yY++  +   ++ f+ +++++S+dL +W+  ++vl+++s ++++++n    P++      g+y + + + ++++ ++ +  v++++++
      KIR63409.1  56 VLKVGDYYYWFGENrnpDNTFRAVSVYRSTDLRTWEFRNNVLTQSSATELQRANI-ERPKVIynASTGRYVMWMHKENGSDyNEARAAVASSATV 149
                     677888666665432124578****************************999998.678887234579*****9944433314444999999999 PP

                     TS--EECEESSCS.TSSECEEEEEEETTSEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEEEEEEEEECGCCTCTTBBEEEEEEEEETTEEEEEE CS
  Glyco_hydro_43 104 eGpwsdpiklkts.gssgiDpslfedddGkkYlvwgqwdkreghseiylaeldddtlklkgektklikagtelkglkvtEGPhlykrdgyyYLla 197
                     +G+++ +++     + ++ D +l+ d+ G++Y++ +  d+      +++ +l+ d+l ++  +  ++++g+       +E+P+++kr+ +y+Ll+
      KIR63409.1 150 DGNYTYHGSFRPLgQHMSRDITLYNDN-GTAYMISAADDN----YDLNIYRLTSDYLNVSTLV-GNFWDGA------HREAPAMFKRGSTYFLLT 232
                     9*********66599999*********.********9666....69****************9.*******......****************** PP

                     EESTSSTTEEEEEEEESSTTSGGEEECT CS
  Glyco_hydro_43 198 aeggtgseyavvvarsksllgPyewkkk 225
                     +     s+ ++++a++ s+ gP++  ++
      KIR63409.1 233 SGATGWSPNQAKYATAPSISGPWSGWTD 260
                     96655567***************97654 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.069
                     EEEEBTEESEEEEEEE...SSSSSCEEEEECEESTTTCSTTTEECTEEEEEEEETTEEEEEEEEEETTCCCSEEEEEEESSTT CS
  Glyco_hydro_43  25 vtstfewfpglrifhS...kdLvnWkqvgrvlerrsqlsmkgknasWAPeiskhdgkyylyytatkkgeakqgifvvtadspe 104
                     vt+++++f +++ +hS    d v++++++++ +++ ++++ g++  W  e+++++g y+ ++ a    + +++  v++a +++
      KIR63409.1 335 VTGNSPAFYRVTARHSgkvMDVVGYSTANNAEVKQYTWNGGGNQK-W--EFQDAGGGYFRIVNA----NSGKCLDVANASTAD 410
                     6778888999999999555599***************99999998.8..999999999988883....455555555555555 PP

>> CDtoxinA  Cytolethal distending toxin A/C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   7.1e-07    0.0025      26     127 ..     363     465 ..     345     476 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 7.1e-07
                 ..EEEEGGG-GGGGGGG-EEEE-SSTT-EEEEETTT--EEEE....ETTEEEEE-..--TT-GGG-EEEEEBTTS-EEEEETTT--EEEE-SS-SS.S- CS
    CDtoxinA  26 tnWelteidskefgklrdklldkknaglvqfknvdegtClaa....yenGvialkk.CdeddketvFsliptttgavqikslssgeCitanflsrlpia 119
                 +n e++++  +  g+++   ++   +g+++++n++ g+Cl +      +G +  +  C +   ++ ++   t    +q++  +sg+C+   +  +    
  KIR63409.1 363 NNAEVKQYTWNGGGNQKW-EFQDAGGGYFRIVNANSGKCLDVanasTADGANIIQYtCGSGT-NQQWQWAAT-GDYFQLRARHSGKCLDVVNAGT-GDS 457
                 344888888888888888.6777888**************9877777888776666699987.899998765.5689***********8876654.456 PP

                 B-EEEE-- CS
    CDtoxinA 120 ktltlekC 127
                  +++   C
  KIR63409.1 458 VDIQQYAC 465
                 66666666 PP

>> UPF0556  Uncharacterised protein family UPF0556
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.24   8.5e+02      43      59 ..     366     382 ..     345     384 .. 0.74
   2 ?    4.1   0.2    0.0081        29      39      59 ..     409     429 ..     393     434 .. 0.79
   3 ?    7.0   0.1     0.001       3.7      45      58 ..     461     474 ..     440     476 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.24
     UPF0556  43 ctftyasqGGtneqwqm 59 
                  +  y+ +GG n++w+ 
  KIR63409.1 366 EVKQYTWNGGGNQKWEF 382
                 45679999*******75 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0081
     UPF0556  39 keyectftyasqGGtneqwqm 59 
                 ++ + +  y++  Gtn+qwq 
  KIR63409.1 409 ADGANIIQYTCGSGTNQQWQW 429
                 55666789***********96 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.001
     UPF0556  45 ftyasqGGtneqwq 58 
                   ya++GGtn+qw 
  KIR63409.1 461 QQYACNGGTNQQWS 474
                 57***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3068.11
//
Query:       KIR63410.1  [L=211]
Description: hypothetical protein TK50_21560 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-10   40.6   0.0      4e-10   40.0   0.0    1.3  1  AAA_33           AAA domain
    9.2e-05   22.4   0.5    0.00011   22.1   0.5    1.2  1  CPT              Chloramphenicol phosphotransferase-like prot
    0.00047   20.7   0.3     0.0013   19.3   0.3    1.9  1  AAA_18           AAA domain
      0.001   19.5   0.2     0.0022   18.4   0.2    1.6  1  AAA              ATPase family associated with various cellul
     0.0083   16.4   0.3      0.019   15.2   0.3    1.6  2  AAA_28           AAA domain
     0.0091   16.4   0.1      0.018   15.5   0.1    1.5  1  AAA_17           AAA domain
     0.0093   16.2   0.3      0.018   15.3   0.3    1.5  1  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.015   15.4   0.1      0.034   14.3   0.1    1.5  1  SKI              Shikimate kinase
      0.059   13.5   0.1       0.11   12.7   0.1    1.4  1  Cytidylate_kin2  Cytidylate kinase-like family
       0.09   12.0   0.1       0.19   10.9   0.1    1.5  2  Zeta_toxin       Zeta toxin
       0.21   11.3   0.3        0.3   10.8   0.3    1.2  1  PRK              Phosphoribulokinase / Uridine kinase family


Domain annotation for each model (and alignments):
>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   2.5e-13     4e-10       1     124 [.       2     133 ..       2     154 .. 0.78

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 2.5e-13
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdtlrrrlfg.......tdqqsktdytr.....vldrlyqilnelarkalsagrnvildatnlsrrerar 87 
                 ++ ++G pG+GK+t+a   + +lg  +l+ d++++ l+        +++ ++    +     v+ r+ + + + ar  +++g ++++ +  ls++  ++
  KIR63410.1   2 VIAVCGCPGAGKTTVASATAGHLGIPFLTRDAIKTGLALssasvgeDGRVRLAGDFHvaggpVSLRAEAVMVGAARLLAASGVSLVVESSVLSHDLLRA 100
                 7899****************************8887766434433333334444444222335566999999**********************99999 PP

      AAA_33  88 flklarrlgvpvrivvvetdeetlkeRlakRaangdd 124
                 +l+  +    +v++v+v + e+++ +Rl +Raa g++
  KIR63410.1 101 LLAGGS----RVLAVHVVAREAVIGRRLVARAAGGGA 133
                 887765....9*********************97654 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.5   6.8e-08   0.00011       3     132 ..       2     129 ..       1     182 [. 0.81

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 6.8e-08
                 EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE.-HHHHHHHHHHHHHHHHHHHTT-EEEEEE--TTTHHHHH CS
         CPT   3 iilLnGgsssGKsslaralqevldepwlhlgvDafvealppkrqdeadglefeteleei.gpeldlllaalyeavaamaraGnnvivDdvilekewlvd 100
                 +i   G + +GK+++a a    l  p+l     +   al  + + e++ ++ +++ +++ gp+  +++a +  a +  a+ G  ++v   +l+++    
  KIR63410.1   2 VIAVCGCPGAGKTTVASATAGHLGIPFLTRDAIKTGLALSSASVGEDGRVRLAGDFHVAgGPVSLRAEAVMVGAARLLAASGVSLVVESSVLSHD---- 96 
                 78889**********************988777777789999999**********998868999999999999***************8888776.... PP

                 HHHHHH.TTS-EEEEEEE--HHHHHHHHHHHTS CS
         CPT 101 llrrll.sgldvllVGvrcplevlerRelergd 132
                 llr ll  g +vl V v +  +v+ rR ++r+ 
  KIR63410.1  97 LLRALLaGGSRVLAVHVVAREAVIGRRLVARAA 129
                 4444441689*****************999975 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.3   7.8e-07    0.0013       1      24 [.       3      26 ..       3     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 7.8e-07
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf 24
                I+++G+pG+GKtt+a + + +lg+
  KIR63410.1  3 IAVCGCPGAGKTTVASATAGHLGI 26
                89*************998887766 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   1.4e-06    0.0022       3      31 ..       5      33 ..       3      49 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.4e-06
                EESSTTSSHHHHHHHHHHHHTHEEEEEET CS
         AAA  3 lyGppGtGKTllakavakelgvefleisg 31
                ++G pG GKT++a+a a +lg++fl+ ++
  KIR63410.1  5 VCGCPGAGKTTVASATAGHLGIPFLTRDA 33
                79**********************98765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.3   1.2e-05     0.019       2      28 ..       3      31 ..       2      50 .. 0.85
   2 ?   -3.0   0.0       4.8   7.9e+03      96     119 ..     134     157 ..     125     179 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-05
      AAA_28  2 ivitGgestGKTtlleaLaar.gypvv.p 28
                i++ G++++GKTt+++a a + g+p + +
  KIR63410.1  3 IAVCGCPGAGKTTVASATAGHlGIPFLtR 31
                899**************999989997744 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.8
      AAA_28  96 aeaeleaaarekrydlvfllppap 119
                  +++l +  ++ ++++ ++ pp++
  KIR63410.1 134 IDQQLLSLFQQGEMRRSIFAPPEG 157
                 556666666667777766666555 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.1e-05     0.018       2      25 ..       7      30 ..       6      43 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
                E-TTSSHHHHHHHHHHHHTEEEEE CS
      AAA_17  2 GgPGsGKgtqceklvekygfthls 25
                G PG+GK+t+++  + ++g+++l+
  KIR63410.1  7 GCPGAGKTTVASATAGHLGIPFLT 30
                99*******************985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.3   1.1e-05     0.018       7      24 ..       2      19 ..       1      31 [. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
      AAA_22  7 ilvvtGesGtGKTtllrr 24
                +++v+G++G+GKTt++  
  KIR63410.1  2 VIAVCGCPGAGKTTVASA 19
                689***********9975 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   2.1e-05     0.034       1      25 [.       9      33 ..       9      41 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.1e-05
                TTSSHHHHHHHHHHHHTSEEEEHHH CS
         SKI  1 mGaGKstvGkllAkklglefiDlDe 25
                +GaGK+tv+ + A +lg++f+  D 
  KIR63410.1  9 PGAGKTTVASATAGHLGIPFLTRDA 33
                6*******************99986 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   6.6e-05      0.11       1      38 [.       2      39 ..       2      56 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.6e-05
  Cytidylate_kin2  1 iITIsreyGsgGetigeaLAekLglpfydreiieevak 38
                     +I++ +  G+g++t++ a A +Lg+pf+ r+ i+    
       KIR63410.1  2 VIAVCGCPGAGKTTVASATAGHLGIPFLTRDAIKTGLA 39
                     67888889**********************99987655 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00012      0.19      18      40 ..       2      24 ..       1      35 [. 0.85
   2 ?   -2.7   0.0       1.8     3e+03      93     111 ..      81      99 ..      69     124 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
  Zeta_toxin 18 lillgGqpGAGKselaellkdel 40
                +i + G pGAGK+++a++++  l
  KIR63410.1  2 VIAVCGCPGAGKTTVASATAGHL 24
                57899************998765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
  Zeta_toxin  93 engyniivegtlrspdvvk 111
                   g++++ve+   s d ++
  KIR63410.1  81 ASGVSLVVESSVLSHDLLR 99 
                 5677777777776666555 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00018       0.3       1      26 [.       2      27 ..       2      48 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
         PRK  1 vIgvagsSGaGkttvarklekifgre 26
                vI+v+g  GaGkttva +    +g  
  KIR63410.1  2 VIAVCGCPGAGKTTVASATAGHLGIP 27
                8**************99887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1382.38
//
Query:       KIR63411.1  [L=407]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-12   46.5   0.6    3.6e-12   46.5   0.6    3.0  3  HTH_31    Helix-turn-helix domain
     0.0025   17.8   0.0     0.0071   16.3   0.0    1.8  2  HTH_19    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.019   15.4   0.0      0.045   14.2   0.0    1.6  1  HTH_26    Cro/C1-type HTH DNA-binding domain
      0.092   13.0   0.0        8.7    6.8   0.0    2.9  2  TPR_8     Tetratricopeptide repeat
       0.14   12.3   0.1       0.39   10.8   0.1    1.9  1  HTH_3     Helix-turn-helix
        1.2    9.4  11.4       0.95    9.8   0.2    3.8  5  TPR_12    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.6   1.2e-15   3.6e-12       2      58 ..      10      66 ..       9      72 .. 0.93
   2 ?   -2.6   0.1       2.4   7.3e+03      10      36 ..     163     190 ..     158     202 .. 0.63
   3 ?   -2.7   0.1       2.6   7.8e+03      44      63 ..     273     292 ..     268     293 .. 0.65

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 1.2e-15
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldp 58
                +G++++++R r+GLsqe +A+++g ++++l+++E+ r+ + +++v+ +la++l+++ 
  KIR63411.1 10 IGERVAWYRYRRGLSQEVLAGLIGRTADWLGKVENNRIELDRLSVIKSLAEVLDVTL 66
                69************************************999*************984 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.4
      HTH_31  10 ReraGLsqe.evAerlgvsestlsrlEq 36 
                 R+  GL  + ++ +++ + es l ++  
  KIR63411.1 163 RRLLGLAYQlAATQLTKLGESDLAWIAA 190
                 5555665553444455566666666655 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.6
      HTH_31  44 pavlealaralgldpaerae 63 
                 + +l+a+ +a g  +a+ ++
  KIR63411.1 273 RTFLAAADQAAGQLGADANH 292
                 66777777777765555555 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.4e-06    0.0071       1      60 [.      11      70 ..      11      74 .. 0.92
   2 ?   -3.5   0.0       3.7   1.1e+04      19      31 ..     266     278 ..     266     278 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.4e-06
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aelllkiaealgidleyll 60
                Ger+  +R  +gl+qe la+ +g +   + + En+++ +++  ++++++ae l+++l  ll
  KIR63411.1 11 GERVAWYRYRRGLSQEVLAGLIGRTADWLGKVENNRI-ELDrLSVIKSLAEVLDVTLGDLL 70
                899**********************************.77769999********9988776 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.7
      HTH_19  19 aerlgisrskisa 31 
                 a+++g++r++++a
  KIR63411.1 266 ANDAGTTRTFLAA 278
                 6899****99975 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.5e-05     0.045       9      58 ..      21      70 ..      19      71 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.5e-05
      HTH_26  9 rgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLl 58
                rg+++  La  +g +a+ l +  ++++e  +l+++  ++++L++t+gDLl
  KIR63411.1 21 RGLSQEVLAGLIGRTADWLGKVENNRIELDRLSVIKSLAEVLDVTLGDLL 70
                8889999999***************************************8 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.056   1.7e+02       8      21 ..     214     227 ..     212     233 .. 0.90
   2 ?    6.8   0.0    0.0029       8.7       8      33 ..     344     369 ..     341     370 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.056
                 HHHHHHTT-HHHHH CS
       TPR_8   8 gsiylklgdyeeAk 21 
                 g++++ +g+y eA+
  KIR63411.1 214 GHALHATGRYTEAV 227
                 99***********7 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0029
                 HHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekaleldpd 33 
                 +++y++ ++++ A++++  a +++p+
  KIR63411.1 344 ARAYSSWNRIDDAQAALLDAEQMAPE 369
                 89******************999996 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00013      0.39       5      55 .]      18      69 ..      14      69 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                HHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSB.HHHHHHHHHHHTSEHHHH CS
       HTH_3  5 RkqlglsqeeLAeklGvsrstisriEnGernPs.letlkklakaLgvsldel 55
                R  +glsqe LA ++G +   + + En++ + + l+++k la++L+v+l +l
  KIR63411.1 18 RYRRGLSQEVLAGLIGRTADWLGKVENNRIELDrLSVIKSLAEVLDVTLGDL 69
                5578************99999*******66664399************9876 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   1.0      0.59   1.8e+03      44      57 ..     159     172 ..     142     196 .. 0.59
   2 ?    9.8   0.2   0.00032      0.95      10      71 ..     174     233 ..     166     236 .. 0.81
   3 ?   -3.6   0.1       4.9   1.5e+04       9      18 ..     276     285 ..     267     294 .. 0.56
   4 ?   -2.5   0.0       2.2   6.5e+03      56      67 ..     311     322 ..     303     323 .. 0.64
   5 ?    5.4   0.3    0.0074        22      48      76 ..     340     368 ..     334     369 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.59
      TPR_12  44 tattlrnLgrlyra 57 
                    ++r Lg +y++
  KIR63411.1 159 QDHARRLLGLAYQL 172
                 44445555555543 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00032
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 a+ l++lg+ d A    ++ l+++r +  +d + t +  r  g +++a+gry eA++l e+a
  KIR63411.1 174 ATQLTKLGESDLAWIAADRGLAAVRPT--GDPLITGSLFRSVGHALHATGRYTEAVRLTEDA 233
                 444577888888888888889999988..778899999999999999999999999987665 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 4.9
      TPR_12   9 laavlrrlgr 18 
                 laa+ +++g+
  KIR63411.1 276 LAAADQAAGQ 285
                 4444444443 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 2.2
      TPR_12  56 ralgryeeAlel 67 
                  +lg+++ A++l
  KIR63411.1 311 AELGDLQVAIDL 322
                 467777777664 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.0074
      TPR_12  48 lrnLgrlyralgryeeAlelleealaiae 76 
                     +r+y+ ++r ++A+++l +a ++a+
  KIR63411.1 340 ALEVARAYSSWNRIDDAQAALLDAEQMAP 368
                 56789*******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 3486.68
//
Query:       KIR63412.1  [L=93]
Description: hypothetical protein TK50_21575 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 708.85
//
Query:       KIR63413.1  [L=241]
Description: hypothetical protein TK50_21585 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-20   72.0   0.0    2.3e-19   68.8   0.0    2.2  2  GntR        Bacterial regulatory proteins, gntR family
    6.3e-19   68.2   0.0      8e-19   67.9   0.0    1.1  1  UTRA        UTRA domain
     0.0043   17.4   0.0      0.013   15.8   0.0    1.8  1  Rrf2        Transcriptional regulator
     0.0071   16.0   0.0      0.013   15.2   0.0    1.4  1  HTH_41      Helix-turn-helix domain
  ------ inclusion threshold ------
      0.013   15.3   0.1        0.1   12.5   0.0    2.4  3  MarR_2      MarR family
      0.024   14.6   0.0      0.058   13.3   0.0    1.6  1  HTH_11      HTH domain
      0.071   13.1   0.0       0.12   12.3   0.0    1.3  1  HTH_36      Helix-turn-helix domain
       0.09   12.8   0.0       0.18   11.8   0.0    1.5  1  HTH_Crp_2   Crp-like helix-turn-helix domain
       0.14   11.7   0.1       0.39   10.3   0.0    1.8  2  HTH_24      Winged helix-turn-helix DNA-binding
       0.14   12.1   0.0       0.27   11.2   0.0    1.4  1  MarR        MarR family
       0.48   10.1   2.8        0.5   10.0   0.6    2.0  2  Leu_leader  Leucine operon leader peptide


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   1.4e-22   2.3e-19       2      64 .]      10      72 ..       9      72 .. 0.98
   2 ?    0.5   0.1      0.29   4.7e+02      30      43 ..     175     188 ..     171     190 .. 0.87

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 1.4e-22
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                y +v   Lr +I +g ++pG++LPse++L++ef Vsr+tv +AL  L+++g++e++qg+G fV
  KIR63413.1 10 YLRVLNTLRKRIEDGDYAPGAALPSENQLCTEFRVSRPTVLKALGILKQDGWIESQQGKGSFV 72
                889999*******************************************************99 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.29
                 HHHHHTS-HHHHHH CS
        GntR  30 LaaefgVsrttvRe 43 
                 L+a +++ r+t R+
  KIR63413.1 175 LRADYATERMTARR 188
                 8999********98 PP

>> UTRA  UTRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   4.9e-22     8e-19       7     140 ..      97     232 ..      91     233 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 4.9e-22
                 EEEEEEEEEEE--HHHHHHHTS-TTSEEEEEEEEEEETTEEEEEEEEEEEGGGTTTCHHHHHH..CS-HHHHHHHHHTTSEEEEEEEEEEEE--HHHHH CS
        UTRA   7 ktevlsleevpasaeiaeaLglpagepvlrieRlrladgepvaleesylpaslvpdlleedle..egslyayleerlgvpitraeetiearladaeeae 103
                 +te+l +  v as+ ia++L++p+g+pv++ +R+   +  pv l  +++p +++ +++    +   g+l ++++++ g++ ++a e+++ar ++  eae
  KIR63413.1  97 ETEILHVGPVLASPRIAAELKIPEGTPVYERRRRTVSGAGPVDLVATFVPVDIAVGTEITKPDpiPGGLLDLIARHKGLRADYATERMTARRVSGIEAE 195
                 79**************************************************99888866555559********************************* PP

                 HHTSTTT-EEEEEEEEEEETTSCEEEEEEEEEETTTE CS
        UTRA 104 lLgisagspvLviervtydadgrpveysrsyyrgdrf 140
                 +L+++a++ v+++  ++++a g p+  s+ +++g+r+
  KIR63413.1 196 ALDVPADESVMSVVITVHQASGDPIMTSVLVMPGSRH 232
                 **********************************998 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   8.1e-06     0.013      29      62 ..      36      69 ..      26      76 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.1e-06
                HHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT- CS
        Rrf2 29 eeiaerqnispsylekilakLrkaglvksvrGkg 62
                +++ +++ +s++ + k l  L++ g+++s++Gkg
  KIR63413.1 36 NQLCTEFRVSRPTVLKALGILKQDGWIESQQGKG 69
                6788999*************************94 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.8e-06     0.013       3      38 ..      29      64 ..      28      72 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.8e-06
      HTH_41  3 GdRlktIeelakeleLSvGlvQkALklLeddkaisl 38
                G+ l++ ++l+ e+ +S+ +v kAL  L++d+ i+ 
  KIR63413.1 29 GAALPSENQLCTEFRVSRPTVLKALGILKQDGWIES 64
                667888899***********************9973 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.2e-05       0.1       5      56 ..       8      67 ..       5      70 .. 0.81
   2 ?   -2.0   0.0       2.1   3.4e+03      22      34 ..     107     119 ..      99     122 .. 0.71
   3 ?   -2.0   0.0       2.1   3.4e+03      10      30 ..     165     183 ..     164     186 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.2e-05
                HHHHHHHHHHHCTTTS.......EE.EHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2  5 paqarvLaaLgrrpgr.......dl.tvgelarrlglsksavsrilkrLvaaGLverrpg 56
                p  +rvL+ L+ r +         l + ++l+ ++++s+++v ++l  L + G++e + g
  KIR63413.1  8 PKYLRVLNTLRKRIEDgdyapgaALpSENQLCTEFRVSRPTVLKALGILKQDGWIESQQG 67
                666777777777776677777764447799**************************8865 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.1
                 EEHHHHHHHHTSS CS
      MarR_2  22 ltvgelarrlgls 34 
                 l+   +a++l+++
  KIR63413.1 107 LASPRIAAELKIP 119
                 6778899999986 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.1
                 HHHHHHCTTTSEEEHHHHHHH CS
      MarR_2  10 vLaaLgrrpgrdltvgelarr 30 
                 +L  ++r+ g  l++   ++r
  KIR63413.1 165 LLDLIARHKG--LRADYATER 183
                 6888999998..887766665 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.6e-05     0.058      19      53 ..      36      69 ..      34      71 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.6e-05
      HTH_11 19 eeLAeeLnvSrrtvrrdIkaLeelgvpIesepgrG 53
                ++L  e+ vSr tv + + +L+  g  Ies +g+G
  KIR63413.1 36 NQLCTEFRVSRPTVLKALGILKQDG-WIESQQGKG 69
                68999********************.*******99 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.4e-05      0.12      24      55 .]      31      62 ..      25      62 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.4e-05
      HTH_36 24 cfpsqetlakrlglsknTvsraikeLeqlGyi 55
                + ps   l++ + +s+ Tv +a+  L q G+i
  KIR63413.1 31 ALPSENQLCTEFRVSRPTVLKALGILKQDGWI 62
                789999*************************9 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011      0.18      25      54 ..      36      66 ..      12      73 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
                HHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET CS
   HTH_Crp_2 25 eelAsmlGltretvsrilseLkreglis.rg 54
                 +l     ++r tv ++l+ Lk++g+i+ ++
  KIR63413.1 36 NQLCTEFRVSRPTVLKALGILKQDGWIEsQQ 66
                566667789*******************642 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       5.8   9.5e+03       6      14 ..      11      19 ..      11      20 .. 0.79
   2 ?   10.3   0.0   0.00024      0.39      21      48 .]      36      63 ..      34      63 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.8
      HTH_24  6 rkILelLqk 14
                +++L++L+k
  KIR63413.1 11 LRVLNTLRK 19
                588999986 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00024
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGlIk 48
                ++L+ +  +S++tv++ l  L+++G+I+
  KIR63413.1 36 NQLCTEFRVSRPTVLKALGILKQDGWIE 63
                68999999*******************7 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00017      0.27      21      52 ..      36      67 ..      30      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
                HHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEE CS
        MarR 21 seLakklgvskstvtrvldrLekkGlieRsks 52
                 +L   + vs++tv ++l  L ++G+ie+++ 
  KIR63413.1 36 NQLCTEFRVSRPTVLKALGILKQDGWIESQQG 67
                57888999*********************986 PP

>> Leu_leader  Leucine operon leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.6   0.00031       0.5      16      26 ..      70      80 ..      69      82 .. 0.86
   2 ?   -1.0   0.1      0.83   1.4e+03      21      26 ..     187     192 ..     186     193 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00031
  Leu_leader 16 fnvRGrlVggi 26
                + vRGr+V+g+
  KIR63413.1 70 SFVRGRPVSGR 80
                569*******9 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.83
  Leu_leader  21 rlVggi 26 
                 r+V+gi
  KIR63413.1 187 RRVSGI 192
                 9****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.55
# Mc/sec: 1316.93
//
Query:       KIR63414.1  [L=145]
Description: hypothetical protein TK50_21590 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.35s 00:00:00.88 Elapsed: 00:00:00.54
# Mc/sec: 813.92
//
Query:       KIR63415.1  [L=474]
Description: cell division protein FtsK [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-15   57.7   0.0    1.8e-15   56.9   0.0    1.3  1  FtsK_SpoIIIE   FtsK/SpoIIIE family
     0.0017   17.3   0.1      0.036   13.0   0.0    2.1  2  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
     0.0034   17.8   2.4      0.095   13.1   0.7    2.8  2  AAA_16         AAA ATPase domain
  ------ inclusion threshold ------
      0.015   13.9   0.4      0.081   11.5   0.1    1.9  2  DUF853         Bacterial protein of unknown function (DUF853)
      0.031   14.0   0.1      0.064   13.0   0.1    1.4  1  AAA_29         P-loop containing region of AAA domain
       0.13   12.3   0.1       0.21   11.6   0.1    1.2  1  DUF87          Helicase HerA, central domain
       0.15   12.3   0.0        0.4   11.0   0.0    1.6  1  AAA_22         AAA domain
       0.26   10.4   0.0        0.4    9.8   0.0    1.2  1  DUF815         Protein of unknown function (DUF815)


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   8.2e-19   1.8e-15       7     216 ..     196     410 ..     191     423 .. 0.82

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 8.2e-19
                   TSHHHHT---TTEEEEEEETTS-EEEEEGGGS-........SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS.SCGGGTT-TTBSS CS
  FtsK_SpoIIIE   7 eskkfrtessqlpvalgkeisgnplvldlkkma.......shllvaGatgsGKStalntLilSlatthtPeeVqliliDykgv.elsalediphlls 95 
                   ++ +  +  ++lpva  +++ g +l +d+++++       sh+l+aGatgsGK  +l +Li +la+      V+    D+kg+ el+a   +   ++
    KIR63415.1 196 RRDPLAEVVGPLPVAEVPDFDGLALGVDENGNTyrlrlsgSHVLIAGATGSGKGSVLWSLIRALAAGIRSGLVEVWAFDPKGGmELAAGVPLFARFA 292
                   556666677889999999999999999****99************************************************9999998666655555 PP

                   .S-B-SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTT---B-TT-................................------- CS
  FtsK_SpoIIIE  96 vavatdperalraleeLvkemeeryalfreagvrsiaaydgeiaedpldifgdvflvlDnyddlaaene..........ritsLsnqgpsygvhvlv 182
                       +dp+  + +lee vk m+ r+a +r    +++       +ed     ++++lv+D+ ++l a  +             +L +qg + gvhv++
    KIR63415.1 293 ---YDDPDSMAGVLEEAVKRMRLRAARLRGMTRQHVPT-----PED-----PLLVLVVDELAALTAYITdrkvrdrikeALGLLLSQGRAVGVHVVA 376
                   ...9*****************98877665544444444.....333.....445677777777776666666777566677889************* PP

                   ----B-----EEEEEEC-HHHHHHHHHHH....H CS
  FtsK_SpoIIIE 183 tagrelekrpslvvivderieLrlaapkdssvlv 216
                   + +   +   + ++++  ri Lrl+ p++  +  
    KIR63415.1 377 ALQDPRKDVLPFRDLFPTRIGLRLTEPEQVDMVL 410
                   *9999999999*****************954443 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.6e-05     0.036      15      42 ..     235     262 ..     226     280 .. 0.77
   2 ?    2.0   0.0     0.035        78     259     282 ..     358     381 ..     309     383 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
  TrwB_AAD_bind  15 tqhilivGttGsGKtqalekllrairar 42 
                     +h+li+G+tGsGK  +l +l+ra+ a 
     KIR63415.1 235 GSHVLIAGATGSGKGSVLWSLIRALAAG 262
                    68******************99987654 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.035
  TrwB_AAD_bind 259 eelksllaegRkfGgavvlglqsi 282
                    e+l  ll +gR +G+ vv++lq+ 
     KIR63415.1 358 EALGLLLSQGRAVGVHVVAALQDP 381
                    35778899**************86 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.058   1.3e+02      72     138 ..     125     191 ..     104     194 .. 0.83
   2 !   13.1   0.7   4.3e-05     0.095      24      63 ..     235     270 ..     227     375 .. 0.56

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.058
      AAA_16  72 laqalareellrqlldeaesaeleawrekleeala..avpelagaeasrllellkrllallsrderp..lv 138
                 la+a+a ++++ qll+       +++ ++l+ +l   ++p++ g++a+rl+++++    ++++++rp  +v
  KIR63415.1 125 LATAFAGDRYVPQLLRV----RCDRYGDELTVRLLpgQIPDDWGQAAERLAYAFRLRTGQARSTDRPdrVV 191
                 78899999999999999....89999999999998899999999999********9998888888887444 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.3e-05
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 ++ vl+ G+ G+GK s++++l ral +     +r   ++ 
  KIR63415.1 235 GSHVLIAGATGSGKGSVLWSLIRALAAG----IRSGLVEV 270
                 379*******************988877....33333333 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   3.6e-05     0.081      14      59 ..     228     277 ..     219     285 .. 0.72
   2 ?    0.1   0.0      0.11   2.4e+02     254     299 ..     328     376 ..     323     387 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.6e-05
      DUF853  14 alalklanrhGliaGatGtGktvtLqvlaesls....eaGvpvfladvkG 59 
                 + +l+l+  h liaGatG Gk   L  l  +l+    +  v v++ d kG
  KIR63415.1 228 TYRLRLSGSHVLIAGATGSGKGSVLWSLIRALAagirSGLVEVWAFDPKG 277
                 567888999*************9987766666411104446777777777 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.11
      DUF853 254 ldkPklvfffde.ahLLfndapkallekveqvvrLirskG..vGvyfvt 299
                 ++ P lv+  de a L    + + + +++   + L+ s+G  vGv+ v+
  KIR63415.1 328 PEDPLLVLVVDElAALTAYITDRKVRDRIKEALGLLLSQGraVGVHVVA 376
                 7899*******95556666788999********9999988779999886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.8e-05     0.064      14      43 ..     226     256 ..     223     263 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.8e-05
      AAA_29  14 ghtieidlkg.atlltGpsGsGKSTllDAiq 43 
                 g+t++++l+g  +l++G++GsGK ++l +++
  KIR63415.1 226 GNTYRLRLSGsHVLIAGATGSGKGSVLWSLI 256
                 578889999999***********99886555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   9.6e-05      0.21      23      61 ..     235     276 ..     227     280 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.6e-05
       DUF87  23 trHlAilgsTGsGKSntvavLleelle..kkga.tililDpH 61 
                   H++i g TGsGK     +L++ l++  + g+ ++  +Dp 
  KIR63415.1 235 GSHVLIAGATGSGKGSVLWSLIRALAAgiRSGLvEVWAFDPK 276
                 57*********************9998552222366666665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018       0.4       5     110 ..     235     361 ..     232     380 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee.............erpevvfvtlpsstsskdllrellralglelka...........erlsseell 79 
                  +++++ G +G+GK  +l  l + l + +                   ++v ++   +  +++               +            rl+  +l+
  KIR63415.1 235 GSHVLIAGATGSGKGSVLWSLIRALAAGIRSGLvevwafdpkggmeLAAGVPLFARFAYDDPD---------------SmagvleeavkrMRLRAARLR 318
                 67999******************9965543333555555555444422222233333333344...............244444444444568899999 PP

      AAA_22  80 ealeqalrarav.ielliiDEaqhlr.....s......eeale 110
                  + +q++ +  +   +l++DE   l+     +      +eal 
  KIR63415.1 319 GMTRQHVPTPEDpLLVLVVDELAALTayitdRkvrdriKEALG 361
                 99999999999999********999655543144444555554 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00018       0.4      40      79 ..     222     261 ..     200     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00018
      DUF815  40 lventeqfleglpannvLLwGarGtGKSslvkallneyae 79 
                 + en +++   l+ ++vL+ Ga G+GK s++ +l++++a+
  KIR63415.1 222 VDENGNTYRLRLSGSHVLIAGATGSGKGSVLWSLIRALAA 261
                 66788888889999**************998888777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3164.22
//
Query:       KIR63416.1  [L=206]
Description: hypothetical protein TK50_21600 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00082   19.3   7.8     0.0011   18.8   7.8    1.3  1  DUF2637   Protein of unknown function (DUF2637)


Domain annotation for each model (and alignments):
>> DUF2637  Protein of unknown function (DUF2637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   7.8   6.4e-08    0.0011       3      92 ..      13     105 ..      11     132 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 6.4e-08
     DUF2637   3 aaifvlivaviafvlSFaalrdlAqkag...lsealawlfPltvDglivaatllalaaslrgrsalllrllawllvalsswiNgieatdvtlk 92 
                  +++vl+v++ a ++SF++++d   + +   +  +++w+  ++ + l++aa+l++ + ++ g +   + +l+ ++vals++   + a+++  +
  KIR63416.1  13 LVLIVLTVGGLAGAASFTHVHDWTMANSptgTGDWFGWANAAISELLPLAALLTIRRRRRTGGPVGYPLFLLVCAVALSLAAQLAVAKPSLSG 105
                 5899*****************97666542237889***********************999999999************88776666444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1443.19
//
Query:       KIR63417.1  [L=72]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-09   37.1   0.1    3.7e-09   36.6   0.1    1.2  1  HTH_17    Helix-turn-helix domain
     0.0022   17.9   0.2     0.0026   17.7   0.2    1.1  1  Exc       Excisionase-like protein
     0.0044   17.0   0.0     0.0046   17.0   0.0    1.1  1  DUF483    Protein of unknown function (DUF483)


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.1   6.2e-13   3.7e-09       1      51 []       5      55 ..       5      55 .. 0.96

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 6.2e-13
      HTH_17  1 lltveEaAelLgvsrstvyrlirrgelpaakiGrrwriprsdleewlekrr 51
                llt +E+A+ L+  ++ v+rl+ + ++ ++k+Gr +r+  s++ ++++++r
  KIR63417.1  5 LLTADEVAARLKATPRFVRRLVAERRIAFVKVGRLVRFEASAVAAYIDSNR 55
                79*************************888*****************9986 PP

>> Exc  Excisionase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   4.3e-07    0.0026       3      64 ..       6      62 ..       4      68 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.3e-07
                EEHHHHHHTS.SS---HHHHHHHHHTT-EES--EEETTEEEEETT-E..E--SSX....XXXXX CS
         Exc  3 ltldeWaadqfrrPrsletlrrWvreglitPaPvkdGreylveedav..kvelerlprvPvtsg 64
                lt de aa+   +Pr    +rr v e +i  a vk Gr   +e++av  + + +r   vP+t +
  KIR63417.1  6 LTADEVAARLKATPR---FVRRLVAERRI--AFVKVGRLVRFEASAVaaYIDSNR--VVPMTRA 62
                688999998877777...69*********..68************9833556666..8898865 PP

>> DUF483  Protein of unknown function (DUF483)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.6e-07    0.0046      21      67 ..      19      66 ..       4      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.6e-07
      DUF483 21 plvseelgiyrrlddleiGkllgyPkCCvksfieekr.faidsehlke 67
                p     l  +rr+  +++G+l+ +    v ++i++ r +++ + hl++
  KIR63417.1 19 PRFVRRLVAERRIAFVKVGRLVRFEASAVAAYIDSNRvVPMTRAHLRD 66
                5555677889***************************9999*999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 550.76
//
Query:       KIR63418.1  [L=450]
Description: trigger factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-39  133.7   1.0    5.6e-39  133.7   1.0    2.5  2  Trigger_N        Bacterial trigger factor protein (TF)
    5.7e-32  111.0   4.6    5.7e-32  111.0   4.6    2.2  2  Trigger_C        Bacterial trigger factor protein (TF) C-term
    5.9e-07   29.7   0.0    1.5e-06   28.4   0.0    1.7  1  FKBP_C           FKBP-type peptidyl-prolyl cis-trans isomeras
  ------ inclusion threshold ------
      0.018   14.7   0.8      0.031   13.9   0.8    1.3  1  BAR              BAR domain
      0.029   14.1   2.0       0.13   12.0   0.1    2.6  3  DUF4201          Domain of unknown function (DUF4201)
      0.034   14.3   0.3       0.15   12.3   0.3    2.1  1  XhlA             Haemolysin XhlA
       0.14   12.0   1.0        1.5    8.7   0.2    3.1  3  Ub-Mut7C         Mut7-C ubiquitin
       0.25   11.1   7.1       0.33   10.7   1.3    3.2  4  SurA_N_3         SurA N-terminal domain
       0.32    9.4   0.2       0.48    8.9   0.2    1.2  1  Corona_S2        Coronavirus S2 glycoprotein
       0.36   10.9   5.5        2.7    8.0   0.4    3.1  3  DUF1664          Protein of unknown function (DUF1664)
          1    9.5  10.4        6.5    6.9   5.9    2.5  2  DHR10            Designed helical repeat protein 10 domain
        1.3    9.5   3.6        2.4    8.7   0.1    2.7  2  Snapin_Pallidin  Snapin/Pallidin
        1.3    9.2  10.6       0.55   10.4   1.8    3.6  2  cwf21            cwf21 domain
        5.1    7.4   6.2        2.9    8.2   2.5    2.5  2  Phage_TAC_4      Phage tail assembly chaperone
        9.8    6.9  10.5       0.55   10.9   1.6    2.9  3  HIP1_clath_bdg   Clathrin-binding domain of Huntingtin-intera


Domain annotation for each model (and alignments):
>> Trigger_N  Bacterial trigger factor protein (TF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.7   1.0   4.7e-42   5.6e-39       1     141 []       1     145 [.       1     145 [. 0.97
   2 ?   -1.2   1.0         2   2.3e+03     128     138 ..     333     343 ..     258     378 .. 0.68

  Alignments for each domain:
  == domain 1  score: 133.7 bits;  conditional E-value: 4.7e-42
                 -EEEEEEEETTEEEEEEEE-HHHCHHHHHHHHHHHHTTS-BTTC-TT---CCCHHHHCTCC.CHHHHHHHHHHCCCCCCCCCS..-EE.EE.E...EEE CS
   Trigger_N   1 mkvtvekleglkvkltvevpaeevekavekalkklakkvkipGFRkGkvPrsiiekrygke.vleealeellnealeeaieeeklepvgqpei...ele 95 
                 mk tve+l++++v+l +evp  e+e++++ka++++ ++v++pGFR+GkvP+++i++r+g++ vl+ea++e++++++  a++e++l+++g+pe+   e++
  KIR63418.1   1 MKSTVETLSPTRVRLAIEVPFVELEPSLKKAYREIGSQVQVPGFRRGKVPAAVIDQRVGRGtVLNEAVQEAIPQNILAAVREHDLKTLGRPEVeitEFN 99 
                 99******************************************************************************************9764489 PP

                 TTC.EEEEEEEEE--EEEE.XCCCSEEEEEXHHHHHHHHHHHHHHH CS
   Trigger_N  96 egkdleftvevevkPevelgdykglevekeevevtdeevdeeleel 141
                 +g++l+ft+ev+v+Pe++l++++++ev+++e +++d+e++e++++l
  KIR63418.1 100 DGDSLNFTAEVDVRPEITLPELDSIEVTVDELKIDDSEIEEQVKNL 145
                 9999***************************************986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2
                 HHHHHHHHHHH CS
   Trigger_N 128 evtdeevdeel 138
                 e t+e++d+el
  KIR63418.1 333 EKTEEQIDAEL 343
                 22333333333 PP

>> Trigger_C  Bacterial trigger factor protein (TF) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.3      0.22   2.6e+02     106     128 ..     128     150 ..     107     161 .. 0.84
   2 !  111.0   4.6   4.8e-35   5.7e-32       1     161 [.     258     418 ..     258     419 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.22
                 HTT----HHHHHHHHHHHCCCTT CS
   Trigger_C 106 eekievteeelkeeleelasqyg 128
                 + ++++++ e++e +++l +++ 
  KIR63418.1 128 VDELKIDDSEIEEQVKNLRERFA 150
                 6789999******9999998876 PP

  == domain 2  score: 111.0 bits;  conditional E-value: 4.8e-35
                 CHHHHHHHHCCCCHHHHHHHHHHHHHCCCHCCCGCGEEEEE-HHHHHHHHHHHHHHHHHCT...TSSHHCHHHHHCTHCCCHCHHCHHHHHHHHHHHHH CS
   Trigger_C   1 tLeeLkedlrkqleeekeeatkeelkealldkLvekaeidiPeslveeeidrllrqakqqleqqGldleeylelsgsseeelreelkeeAekrVklgLv 99 
                 t+eeL++d+r+++ + k+ ++  + ++++l++Lve+a ++ Pe+ v ee++ + +++ +qle+ G++leeyl++++++ee+ ++el e+A++ Vk++L+
  KIR63418.1 258 TIEELRADVRERVTRGKRVEQIYAARDKALEQLVEAAGVPAPEGVVREEVEGRKQAMIDQLERIGASLEEYLAAEEKTEEQIDAELNEAATDGVKIQLL 356
                 89************************************************************************************************* PP

                 HHHHHHHTT----HHHHHHHHHHHCCCTTSXHHHHHHHHHHXHHHHHHHHHHHHHHHHHHHC CS
   Trigger_C 100 leeiakeekievteeelkeeleelasqygmepeevkeflkkneqlsalkedileekvvdlll 161
                 l+ +a++e+++v+++e   e+   a++ gm+p++  ++l +++++ a+  d+++ k+++ ++
  KIR63418.1 357 LDTLADAEEVQVSDDEFGHEIVHRAQRAGMPPQQYYDQLVRSGSAAAVFGDVRRGKALASVM 418
                 *********************************************************98765 PP

>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.2e-09   1.5e-06       3      64 ..     157     215 ..     155     218 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.2e-09
                 CBB-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEE CS
      FKBP_C   3 eeakegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtlt 64 
                 + a+egd V+++ ++++ dg+ + +    a++++ +vGs+q+++G++eal+g+ +Ge  t+t
  KIR63418.1 157 RAAAEGDYVQIDLNATV-DGEDVPGG--SATNISHEVGSKQLLPGLDEALVGLAAGESTTFT 215
                 5699*************.88888888..8*****************************9997 PP

>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.8   2.6e-05     0.031      15     119 ..     236     346 ..     231     366 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.6e-05
         BAR  15 kvgkaekTkLDedFeelerrldvteklieklvkelkeylqanpgarakqivlekl.....keqplelLaesmieagkelgedss.fgkalekygeavkk 107
                 +v+  e  +LD+dF ++++++d+ e+l  ++ +++++  +  + + a++ +le+l      + p++++ e  +   + + ++ +  g  le+y +a++k
  KIR63418.1 236 TVKEKELPELDDDFAQMASEFDTIEELRADVRERVTRGKRVEQIYAARDKALEQLveaagVPAPEGVVREEVEGRKQAMIDQLErIGASLEEYLAAEEK 334
                 677889999***************************99999999999999999999****9999****9999999999999999999999999999999 PP

         BAR 108 laqteeelekrv 119
                   ++ + +  ++
  KIR63418.1 335 TEEQIDAELNEA 346
                 966655554444 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.39   4.7e+02      94     119 ..     129     154 ..     120     163 .. 0.62
   2 ?   12.0   0.1   0.00011      0.13      79     166 ..     234     320 ..     229     331 .. 0.81
   3 ?   -0.8   0.1      0.94   1.1e+03      97     133 ..     312     348 ..     300     354 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.39
     DUF4201  94 selkkelkekeerlaklrkelykvkl 119
                  elk + +e+ee+ + lr++   +k+
  KIR63418.1 129 DELKIDDSEIEEQVKNLRERFATLKT 154
                 45555556666666666666655554 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00011
     DUF4201  79 lthlkeklh.mleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggllrvPaLlkDYdktkekveekrksvkkLrr 166
                 + ++kek+  +l+  ++++ +e +++ee +a++r+++++ k   + + ++ + l+q  +  +vPa     + ++e    k++ +++L+r
  KIR63418.1 234 VRTVKEKELpELDDDFAQMASEFDTIEELRADVRERVTRGKRVEQIYAARDKALEQLVEAAGVPAPEG--VVREEVEGRKQAMIDQLER 320
                 56789998779*********************************************999999998655..4444444446666666666 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.94
     DUF4201  97 kkelkekeerlaklrkelykvklerdklrkqneklkq 133
                 +  ++++e+  a+l++ l   ++  ++++++ ++  +
  KIR63418.1 312 QAMIDQLERIGASLEEYLAAEEKTEEQIDAELNEAAT 348
                 3445555555677777788878877777777776655 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   0.00013      0.15      13      45 ..     121     153 ..     119     158 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00013
        XhlA  13 ldnleervdkleekaaeaeekiknleedlkkle 45 
                 ld++e +vd+l+ + +e ee++knl e+ + l+
  KIR63418.1 121 LDSIEVTVDELKIDDSEIEEQVKNLRERFATLK 153
                 899************************988887 PP

>> Ub-Mut7C  Mut7-C ubiquitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.5   1.8e+03      37      64 ..      83     109 ..      76     118 .. 0.74
   2 ?    8.7   0.2    0.0013       1.5      26      57 ..     278     310 ..     254     334 .. 0.69
   3 ?   -1.5   0.0         2   2.4e+03       9      34 ..     322     348 ..     317     350 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.5
    Ub-Mut7C  37 hviEalGVPhtEVelilvnGesvgfshi 64 
                 h + +lG P +E+   + +G+s +f + 
  KIR63418.1  83 HDLKTLGRPEVEITEFN-DGDSLNFTAE 109
                 67788999988888766.7777777655 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0013
    Ub-Mut7C  26 avafdeaatvkhviEalGVPhtE.VelilvnGe 57 
                 +   ++   +  ++Ea GVP +E V    v+G+
  KIR63418.1 278 QIYAARDKALEQLVEAAGVPAPEgVVREEVEGR 310
                 3345677899************94333356665 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2
    Ub-Mut7C   9 yaeLndflprarrer.alavafdeaat 34 
                  a+L+++l+ +++++ ++ ++ +eaat
  KIR63418.1 322 GASLEEYLAAEEKTEeQIDAELNEAAT 348
                 688999999988875156666666666 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.5   1.8e+03      70     104 ..      36      70 ..      23      79 .. 0.51
   2 ?    1.4   0.1      0.21   2.5e+02      42      67 ..     126     151 ..     120     170 .. 0.81
   3 ?    1.0   0.7      0.26   3.2e+02      93     151 ..     283     342 ..     247     345 .. 0.73
   4 ?   10.7   1.3   0.00027      0.33      57     140 ..     313     398 ..     300     414 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.5
    SurA_N_3  70 ggnldaelldelglrqqvldqlidealllqeakkl 104
                 g +++   +++ ++  +v+dq + +  +l+ea ++
  KIR63418.1  36 GSQVQVPGFRRGKVPAAVIDQRVGRGTVLNEAVQE 70 
                 44444444444444444444444444444444433 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.21
    SurA_N_3  42 akVngekIsraefqqayrrqleqlrq 67 
                 ++V++ kI  +e+++++++ +e+++ 
  KIR63418.1 126 VTVDELKIDDSEIEEQVKNLRERFAT 151
                 68999999999999999999988765 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.26
    SurA_N_3  93 dealllqeakklglsvsdeevakeiasip.aFqedGkFdkerYkqlLaangltpeefeas 151
                 ++++l+q ++  g+ +++  v++e++  + a+ ++ +   + ++++Laa + t+e+  a+
  KIR63418.1 283 RDKALEQLVEAAGVPAPEGVVREEVEGRKqAMIDQLERIGASLEEYLAAEEKTEEQIDAE 342
                 578889999999999999999999954442555333333566777777777777776665 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.00027
    SurA_N_3  57 ayrrqleqlrqqlggnldaellde....lglrqqvldqlidealllqeakklglsvsdeevakeiasipaFqedGkFdkerYkqlLaa 140
                 a+  qle++  +l++ l ae+ +e    ++l++++ d +  + ll+  a+ ++++vsd+e   ei      q+ G   ++ Y ql+++
  KIR63418.1 313 AMIDQLERIGASLEEYLAAEEKTEeqidAELNEAATDGVKIQLLLDTLADAEEVQVSDDEFGHEIVHRA--QRAGMPPQQYYDQLVRS 398
                 333444444555555444444444567789***********************************8776..77787666666666554 PP

>> Corona_S2  Coronavirus S2 glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2    0.0004      0.48     491     538 ..     110     157 ..      62     166 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0004
                 XXSXXXXXHHHHTTHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHTT CS
   Corona_S2 491 enykpnvelpdldkfnatvlnltseidrlqevidnlneslvdleklnr 538
                  + +p+ +lp+ld +  tv +l+ + ++++e ++nl e +  l+ ++r
  KIR63418.1 110 VDVRPEITLPELDSIEVTVDELKIDDSEIEEQVKNLRERFATLKTVER 157
                 2678***************99999999***********9999998876 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.078        93      84     114 ..     123     153 ..     108     158 .. 0.67
   2 ?    0.1   0.0      0.66   7.9e+02      86     115 ..     239     268 ..     226     278 .. 0.64
   3 ?    8.0   0.4    0.0023       2.7      53      91 ..     303     341 ..     271     363 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.078
     DUF1664  84 eikeevtevredlseigedvesvkeavegle 114
                 +i+  v+e++ d sei+e+v++++e + +l+
  KIR63418.1 123 SIEVTVDELKIDDSEIEEQVKNLRERFATLK 153
                 4555666666666666666666666666654 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.66
     DUF1664  86 keevtevredlseigedvesvkeavegles 115
                 ++e+ e+ +d +++ +++++++e+  ++ +
  KIR63418.1 239 EKELPELDDDFAQMASEFDTIEELRADVRE 268
                 456677777777777777777665444444 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0023
     DUF1664  53 vseslaatkrhLssridrvdkkldeqkeiskeikeevte 91 
                 v e+++  k+ + ++++r++++l+e  ++ ++++e++++
  KIR63418.1 303 VREEVEGRKQAMIDQLERIGASLEEYLAAEEKTEEQIDA 341
                 67999*********************9999999998864 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.033        40      66      99 ..     121     154 ..     109     162 .. 0.68
   2 ?    6.9   5.9    0.0054       6.5      10     115 ..     241     346 ..     235     348 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.033
       DHR10  66 leekeielrelerkeerlqrqlenaeeklerlre 99 
                 l++ e ++ el+   + ++ q++n +e+++ l+ 
  KIR63418.1 121 LDSIEVTVDELKIDDSEIEEQVKNLRERFATLKT 154
                 4555556666666666777777777777766654 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0054
       DHR10  10 elaelErkarelqakidalqvvekdlrsciklleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekreaa 108
                 el el+    ++    d+++++ +d+r+ ++  + +e+  a+ ++a ++l e+    +  +  ++e+e +++ +  qle+    le +    e+ +e+ 
  KIR63418.1 241 ELPELDDDFAQMASEFDTIEELRADVRERVTRGKRVEQIYAARDKALEQLVEAAGVPAPEGVVREEVEGRKQAMIDQLERIGASLEEYLAAEEKTEEQI 339
                 5667777778889999*********************************************************************************** PP

       DHR10 109 karleel 115
                 +a+l e+
  KIR63418.1 340 DAELNEA 346
                 9999886 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1     0.002       2.4      10      51 ..     116     157 ..     114     165 .. 0.91
   2 ?    0.5   0.5      0.71   8.4e+02      24      53 ..     306     336 ..     305     360 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.002
  Snapin_Pallidin  10 llepkldeldeklkelrqsQeeLleqldrlnekLkeleeaqe 51 
                      +  p+ld ++ ++ el+   +e  eq+++l+e+++ l+ ++ 
       KIR63418.1 116 ITLPELDSIEVTVDELKIDDSEIEEQVKNLRERFATLKTVER 157
                      6689*******************************9998876 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.71
  Snapin_Pallidin  24 elrqsQeeLleqldrlnekLkeleeaqe.ae 53 
                      e++   +++ +ql+r  ++L+e+  a+e +e
       KIR63418.1 306 EVEGRKQAMIDQLERIGASLEEYLAAEEkTE 336
                      5666677888889998888888888887333 PP

>> cwf21  cwf21 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.8   0.00046      0.55      25      40 ..     133     148 ..      14     150 .. 0.80
   2 ?    1.4   1.8       0.3   3.5e+02      16      36 ..     325     345 ..     315     346 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00046
       cwf21  25 lseeeIeervdelRek 40 
                  ++ eIee+v++lRe+
  KIR63418.1 133 IDDSEIEEQVKNLRER 148
                 599************9 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.3
       cwf21  16 lrdeLEeeglseeeIeervde 36 
                 l++ L  e+ +ee+I+++++e
  KIR63418.1 325 LEEYLAAEEKTEEQIDAELNE 345
                 4455555767*****998876 PP

>> Phage_TAC_4  Phage tail assembly chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       2.1   2.5e+03      18      64 ..     116     167 ..     106     176 .. 0.51
   2 ?    8.2   2.5    0.0024       2.9       9      74 ..     209     270 ..     202     363 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.1
  Phage_TAC_4  18 vklprldgekakveftfkamdrkelaeleeereqseak..eeekaaae.....e 64 
                  ++lp+ld+   +v++   ++d +e++e +++ +++ a   + e+aaae      
   KIR63418.1 116 ITLPELDS--IEVTVDELKIDDSEIEEQVKNLRERFATlkTVERAAAEgdyvqI 167
                  55555554..44444445556666665555555554430033344444444444 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0024
  Phage_TAC_4   9 gqaPtFklpvklprldgekakveftfkamdrkelaeleeereqseakeeekaaaeedleasidkgl 74 
                  g++ tF+ +    +  g +a+v +t++ +++kel el +   q++    ++ ++ e+l+a +++ +
   KIR63418.1 209 GESTTFTTQLVGGDFAGRDAEVAVTVRTVKEKELPELDDDFAQMA----SEFDTIEELRADVRERV 270
                  56668888888888999**********************999884....23333344555555544 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.9   2.2e+03      25      41 ..     131     147 ..     119     171 .. 0.53
   2 ?   -0.1   0.3       1.2   1.4e+03      15      60 ..     235     265 ..     222     293 .. 0.50
   3 ?   10.9   1.6   0.00046      0.55      22      83 ..     304     365 ..     301     370 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.9
  HIP1_clath_bdg  25 verekkeleeelerlke 41 
                     ++   +e+ee++++l+e
      KIR63418.1 131 LKIDDSEIEEQVKNLRE 147
                     33333333333333333 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.2
  HIP1_clath_bdg  15 lsvarqaqeeverekkeleeelerlkeeaerkleeqkeelekLkre 60 
                      +v  ++  e++    +++ e++ ++e               L+++
      KIR63418.1 235 RTVKEKELPELDDDFAQMASEFDTIEE---------------LRAD 265
                     344445555666666666666665543...............2222 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00046
  HIP1_clath_bdg  22 qeeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsge 83 
                     +eeve  k+ + ++ler+ ++ e+ l+  +++ e++ +el++  ++  +++  L++ + ++e
      KIR63418.1 304 REEVEGRKQAMIDQLERIGASLEEYLAAEEKTEEQIDAELNEAATDGVKIQLLLDTLADAEE 365
                     69*****************************************9999999988887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       925  (0.0515924); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 3172.42
//
Query:       KIR63419.1  [L=213]
Description: Clp protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-78  261.5   0.1    4.6e-78  261.3   0.1    1.0  1  CLP_protease   Clp protease
  ------ inclusion threshold ------
      0.035   13.7   0.0      0.076   12.6   0.0    1.6  1  GTP1_OBG       GTP1/OBG
       0.12   12.3   1.1       0.19   11.7   0.2    1.7  2  Peptidase_S49  Peptidase family S49


Domain annotation for each model (and alignments):
>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.3   0.1   7.7e-82   4.6e-78       7     180 ..      27     200 ..      21     202 .. 0.98

  Alignments for each domain:
  == domain 1  score: 261.3 bits;  conditional E-value: 7.7e-82
                   HHHHHHHHTTTEEEEES-BSHHHHHHHHHHHHHHHHH-SSS-EEEEEEE--B-HHHHHHHHHHHHHSSS-EEEEEEEEEETHHHHHHHTS-TTGEEE CS
  CLP_protease   7 ydiysrllkeriiflgseiddevankiiaqLllLeaedpdkdillyinspGGsvtaglaIydtmqyikpdvsticlGlaaSmgslllaagekgkRfa 103
                    ++y+rll+eriiflgse++d+van+i+aqLllL aedpd+di+l inspGGsv +g+aIydtmqyi  dvst+++G+aaSmg+lll+ag+kgkR+a
    KIR63419.1  27 DSVYNRLLRERIIFLGSEVNDQVANRICAQLLLLAAEDPDRDIYLWINSPGGSVYSGMAIYDTMQYIDNDVSTVAMGMAASMGQLLLCAGTKGKRYA 123
                   579********************************************************************************************** PP

                   ETTEEEEES-TEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHCSTEEEEHHHHHHHTSSSEE-S CS
  CLP_protease 104 lpnarimihqPlggaqgqasdieieaeellkikerlneilakhtgqslekiekdldrdtflsaeeAveyGLidevie 180
                   lp+arim+hqP+gg++g+asdi+i+ae++l +k+  +e +a htgq+  +ie+d drd++++a+eA +yG+id+vi+
    KIR63419.1 124 LPHARIMMHQPSGGMGGTASDIAIQAEQMLYTKRMFQERVAFHTGQTFAQIEADSDRDRWFTAQEATDYGFIDKVIT 200
                   ***************************************************************************97 PP

>> GTP1_OBG  GTP1/OBG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.3e-05     0.076      24      61 ..     127     164 ..     110     172 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
                 TTCCCEEB-S--------EEEEE-TT--SSGCCCTSSE CS
    GTP1_OBG  24 kyvpkggpdGGdGGkGGdvileadeklntlldlkykkk 61 
                   + +  p+GG GG   d+ ++a++ l t   ++ +  
  KIR63419.1 127 ARIMMHQPSGGMGGTASDIAIQAEQMLYTKRMFQERVA 164
                 5567789********************99999985544 PP

>> Peptidase_S49  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.44   2.6e+03      10      28 ..      98     116 ..      94     131 .. 0.66
   2 ?   11.7   0.2   3.1e-05      0.19      95     138 ..     155     199 ..     142     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.44
                    EEEEEEEEETHHHHHHTTS CS
  Peptidase_S49  10 vasaenvaaSggYylasaa 28 
                      +a ++aaS g++l +a 
     KIR63419.1  98 STVAMGMAASMGQLLLCAG 116
                    5567789999999876554 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.1e-05
                    HHHHHHHHHHHHHTS-HHHHHCHHCC.HEEEHHHHHHTTSSSEET CS
  Peptidase_S49  95 tyqqFvqtVaknRnlsveqvdkiAeg.rvltgqqAlklgLvdelg 138
                    t  +F + Va +++ +  q+++  ++ r +t+q+A + g++d++ 
     KIR63419.1 155 TKRMFQERVAFHTGQTFAQIEADSDRdRWFTAQEATDYGFIDKVI 199
                    6789*********************99999************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1634.83
//
Query:       KIR63420.1  [L=220]
Description: Clp protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-75  252.3   0.1    3.1e-75  252.1   0.1    1.0  1  CLP_protease   Clp protease
  ------ inclusion threshold ------
      0.076   13.0   0.0       0.12   12.4   0.0    1.4  1  DDR_swiveling  DD-reactivating factor swiveling domain


Domain annotation for each model (and alignments):
>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.1   0.1   3.5e-79   3.1e-75       7     181 ..      33     208 ..      27     209 .. 0.96

  Alignments for each domain:
  == domain 1  score: 252.1 bits;  conditional E-value: 3.5e-79
                   HHHHHHHHTTTEEEEES-BSHHHHHHHHHHHHHHHHH-SSS-EEEEEEE--B-HHHHHHHHHHHHHSSS-EEEEEEEEEETHHHHHHHTS-TTGEEE CS
  CLP_protease   7 ydiysrllkeriiflgseiddevankiiaqLllLeaedpdkdillyinspGGsvtaglaIydtmqyikpdvsticlGlaaSmgslllaagekgkRfa 103
                    + y++l+++riiflg ++dd++an+++aqLl+Le +dpd+di +yinspGGs+ta++aIydtmqy++pd+st+clG+aaS++++ll+ag++gkR+a
    KIR63420.1  33 SNPYNKLFEDRIIFLGVQVDDASANDVMAQLLTLEGTDPDRDIIMYINSPGGSFTAMTAIYDTMQYVRPDISTVCLGQAASAAAVLLSAGTPGKRMA 129
                   6789********************************************************************************************* PP

                   ETTEEEEES-TEE.EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHCSTEEEEHHHHHHHTSSSEE-SS CS
  CLP_protease 104 lpnarimihqPlg.gaqgqasdieieaeellkikerlneilakhtgqslekiekdldrdtflsaeeAveyGLideviek 181
                   lpn+ri+ihqP+  g  gq sdiei+a+e+l+++++l+e+la+h++q++ek++kd+drd++++aee +eyGL+d+++++
    KIR63420.1 130 LPNSRIIIHQPATeGGYGQGSDIEIQAREILRMRTQLEEMLARHCNQPVEKVRKDIDRDKIMTAEESKEYGLVDTILTS 208
                   ***********7516667**********************************************************986 PP

>> DDR_swiveling  DD-reactivating factor swiveling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.3e-05      0.12       3      41 ..     132     170 ..     130     217 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.3e-05
  DDR_swiveling   3 estmiGhnPstPgGlGlgvGetvkleelekakkeeeviv 41 
                    +s +i h+P+t gG+G+g  + ++ +e+ +++++ e ++
     KIR63420.1 132 NSRIIIHQPATEGGYGQGSDIEIQAREILRMRTQLEEML 170
                    6899*********************99998887655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1776.28
//
Query:       KIR63421.1  [L=431]
Description: ATP-dependent protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-50  169.8   0.0    9.2e-50  169.1   0.0    1.3  1  AAA_2            AAA domain (Cdc48 subfamily)
    7.5e-21   73.7   6.0      2e-20   72.4   6.0    1.8  1  zf-C4_ClpX       ClpX C4-type zinc finger
    1.7e-16   60.8   0.0    4.2e-16   59.6   0.0    1.7  1  AAA              ATPase family associated with various cellul
    4.6e-16   58.6   0.1    1.4e-15   57.1   0.1    1.8  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
      2e-07   31.1   0.0    1.2e-06   28.5   0.1    2.3  2  AAA_5            AAA domain (dynein-related subfamily)
    1.9e-06   27.4   1.0     0.0088   15.4   0.2    3.3  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
    6.4e-06   26.0   0.7    0.00011   22.0   0.7    2.5  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    1.3e-05   25.5   0.2    0.00013   22.3   0.1    2.5  1  AAA_22           AAA domain
    5.2e-05   22.4   0.0    9.9e-05   21.5   0.0    1.4  1  MCM              MCM P-loop domain
    0.00016   21.4   0.0    0.00031   20.5   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
    0.00039   21.0   0.0    0.00095   19.7   0.0    1.7  1  AAA_18           AAA domain
     0.0013   19.1   0.1      0.011   16.2   0.0    2.3  3  AAA_16           AAA ATPase domain
     0.0014   18.4   0.0       0.11   12.2   0.0    2.5  2  Sigma54_activat  Sigma-54 interaction domain
     0.0046   16.9   0.0     0.0085   16.1   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0061   16.6   0.0      0.011   15.8   0.0    1.4  1  AAA_14           AAA domain
     0.0075   15.5   0.6      0.074   12.2   0.6    2.2  1  TIP49            TIP49 P-loop domain
  ------ inclusion threshold ------
      0.011   16.2   0.0      0.024   15.0   0.0    1.7  1  RNA_helicase     RNA helicase
      0.013   16.0   0.0      0.032   14.7   0.0    1.7  1  ABC_tran         ABC transporter
      0.013   15.4   0.0      0.037   14.0   0.0    1.8  1  NACHT            NACHT domain
      0.014   15.0   0.0      0.023   14.2   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
      0.015   15.0   0.0      0.032   14.0   0.0    1.5  1  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.026   14.2   0.0       0.04   13.6   0.0    1.3  1  AAA_24           AAA domain
      0.031   13.3   0.0      0.052   12.6   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
      0.033   14.1   0.0      0.065   13.1   0.0    1.4  1  Rad17            Rad17 P-loop domain
       0.04   14.1   0.0      0.094   12.9   0.0    1.7  1  AAA_33           AAA domain
      0.053   13.6   0.0       0.15   12.2   0.0    1.7  1  Sigma54_activ_2  Sigma-54 interaction domain
      0.055   13.3   0.0        0.1   12.4   0.0    1.4  1  Bac_DnaA         Bacterial dnaA  protein
      0.063   13.5   0.0       0.15   12.3   0.0    1.7  1  AAA_28           AAA domain
      0.082   12.6   0.0       0.14   11.9   0.0    1.4  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.084   13.2   0.9       0.61   10.4   0.1    2.6  3  AAA_19           AAA domain
       0.12   12.5   0.0        0.3   11.2   0.0    1.7  1  SKI              Shikimate kinase
       0.18   11.7   0.3         17    5.2   0.0    2.8  3  NTPase_1         NTPase
       0.23   11.0   0.8        2.6    7.6   0.1    2.2  2  AAA_25           AAA domain


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.1   0.0   1.7e-52   9.2e-50       3     171 .]     115     312 ..     113     312 .. 0.97

  Alignments for each domain:
  == domain 1  score: 169.1 bits;  conditional E-value: 1.7e-52
                 ---EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----...---------HH CS
       AAA_2   3 iisilllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligappgyvgaeegGivllDEidKihpk...essgadvSreg 94 
                 +++illlgptg+Gkt la++la++l+v    ++++ada++l+e    +e+ve+++ +li+a++++++++e Gi+++DE+dKi++k   +s+++dvS+eg
  KIR63421.1 115 KSNILLLGPTGCGKTHLAQTLARMLNV----PFAIADATALTEagyvGEDVENILLKLIQAADYDIKRAETGIIYIDEVDKIARKsenPSITRDVSGEG 209
                 789***********************8....*******************************************************999********** PP

                 HHHHHHHHHH--EE-.........----.--EE-TT-EEEEEE--TTHHHHTTTS-S................TTTTSGGG--HHHHHHTT--HHHHTT CS
       AAA_2  95 VqrdLLqileggtlt.........dkqg.rkvdtknilfImtgafgsskisdesrsk................eeeeekkkeeveeelkkglipEllgR 167
                 Vq++LL++leg++++         ++q+  ++dt+n+lfI++gaf++ +++ e+r++                ++++   + ++e+ lk+glipE++gR
  KIR63421.1 210 VQQALLKMLEGTVANvppqggrkhPHQEfIQIDTTNVLFICGGAFAGLDQIIEARTGhggtgfgarlrsvserSTDDIFSQVMPEDMLKFGLIPEFIGR 308
                 ************************99999*********************99999999*************999999999******************* PP

                 --EE CS
       AAA_2 168 lpei 171
                 lp+i
  KIR63421.1 309 LPVI 312
                 *986 PP

>> zf-C4_ClpX  ClpX C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   6.0   3.6e-23     2e-20       2      39 .]      12      48 ..      11      48 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 3.6e-23
  zf-C4_ClpX  2 rCSFCgksesevkklIagpngvyICdeCvelcneiiee 39
                +CSFCgks+++vkklIagp gvyICdeC++lcneiiee
  KIR63421.1 12 KCSFCGKSQKQVKKLIAGP-GVYICDECIDLCNEIIEE 48
                8******************.6***************97 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   7.6e-19   4.2e-16       1     110 [.     118     245 ..     118     263 .. 0.83

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 7.6e-19
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTS....TSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsell.skyvgesekkirelfkeakeka....kpsilfiDEidalaksr...sgseseeeervvnqLlt 91 
                 +ll Gp G+GKT la+ +a+ l+v+f   +++ l+   yvge  ++i   + +a        ++ i+ iDE+d++a+++   s + + ++e v+++Ll+
  KIR63421.1 118 ILLLGPTGCGKTHLAQTLARMLNVPFAIADATALTeAGYVGEDVENILLKLIQAADYDikraETGIIYIDEVDKIARKSenpSITRDVSGEGVQQALLK 216
                 69*********************************667****9999865554443333456567***************98877899999********* PP

                 HHHHTTTS..........SSTEEEEEEES CS
         AAA  92 eldgvkkk..........eskvivigatn 110
                 +l+g   +          ++++i i +tn
  KIR63421.1 217 MLEGTVANvppqggrkhpHQEFIQIDTTN 245
                 ****9988888888888844466666655 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.1   2.5e-18   1.4e-15       1      70 [.     318     391 ..     318     407 .. 0.93

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 2.5e-18
                    SCHHHHHHHHHH...HHHHHHHHSCT.TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHT CS
  ClpB_D2-small   1 LtkeelkkIvdl...alkklekrlke.rgvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeils 70 
                    L++++l++I+++   al k+++rl e +gvele+++ al+a+a++++ + +GAR+Lr i+++ ++ +++e++++
     KIR63421.1 318 LDRSALVRILTEprnALVKQYQRLFElDGVELEFEPPALEAIADQAMLRGTGARGLRAIMEEVLLSVMYEVPSN 391
                    8999********************999*****************************************988765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.1   2.3e-09   1.2e-06       1      79 [.     117     194 ..     117     198 .. 0.82
   2 ?   -2.6   0.0       9.5   5.2e+03      81     117 ..     210     247 ..     206     251 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 2.3e-09
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------......G-SEEEEESGGG--H CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar......egeilvlDEveraes 79 
                 ++lL+Gp+G+gK+ la+ la++ln ++ +   t+ t++  +   +e           +l +aa       e  i+++DEv+++ +
  KIR63421.1 117 NILLLGPTGCGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVEN-------ILLKLIQAADydikraETGIIYIDEVDKIAR 194
                 689*******************************8888888887773.......3344444444666678999********9875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9.5
                 HHHHHHHHHHSSEEE..-SSSEEE---.......-EEE CS
       AAA_5  81 vlnsLlslleerrllleeggelvkakndd.llerfrvi 117
                 v+++Ll++le     +++ g++ +  +++ ++ +++v+
  KIR63421.1 210 VQQALLKMLEGTVANVPPQGGRKHPHQEFiQIDTTNVL 247
                 78899999999999999999998888876555555555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.014       7.5       5      35 ..      75     108 ..      72     116 .. 0.80
   2 !   15.4   0.2   1.6e-05    0.0088      22      47 ..     115     140 ..     108     155 .. 0.86
   3 ?    3.1   0.0     0.099        54     101     121 ..     175     195 ..     168     199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.014
  Mg_chelatase   5 vkGqeeakraleiaaaGgHnll...lvGppGsGK 35 
                   v+Gq++ak+al +a+  + + +    +G+pGsG 
    KIR63421.1  75 VVGQDQAKKALAVAVYNHYKRIqaeAAGAPGSGS 108
                   99*************9888766222479999985 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.6e-05
  Mg_chelatase  22 gHnlllvGppGsGKtmlakrlpsllp 47 
                   + n+ll+Gp G+GKt la+ l+ +l 
    KIR63421.1 115 KSNILLLGPTGCGKTHLAQTLARMLN 140
                   469******************99885 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.099
  Mg_chelatase 101 eislahnGvLfLDElpefkrk 121
                   +i +a++G++++DE+ ++ rk
    KIR63421.1 175 DIKRAETGIIYIDEVDKIARK 195
                   799************999886 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.7     2e-07   0.00011      32     101 ..     114     197 ..      67     201 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2e-07
      RuvB_N  32 aldhvllyGpPGlGkttlakiiakelgvklkitsgPvlekag....dlaalltnl..........eekdvlfideihrlsrave 101
                 a   +ll Gp G Gkt la+ +a+ l+v + i+ + +l +ag    d+  +l +l           e+ +++ide+ +++r+ e
  KIR63421.1 114 AKSNILLLGPTGCGKTHLAQTLARMLNVPFAIADATALTEAGyvgeDVENILLKLiqaadydikrAETGIIYIDEVDKIARKSE 197
                 44579*********************************9997555577788876632222222212345899999999988776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   2.4e-07   0.00013       5     104 ..     115     193 ..     112     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.4e-07
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhl 103
                 ++ +++ G++G+GKT+l+++l++ l         +++++  +++++t+   + +++ ++l             l++a    ++++ + +++ iDE++++
  KIR63421.1 115 KSNILLLGPTGCGKTHLAQTLARML---------NVPFAIADATALTEAGYVGEDVENILL-----------KLIQAADYDIKRAET-GIIYIDEVDKI 192
                 57899********************.........999999999999988888888887777...........488888888888888.99999999887 PP

      AAA_22 104 r 104
                  
  KIR63421.1 193 A 193
                 4 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.8e-07   9.9e-05      18     137 ..      67     196 ..      59     202 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.8e-07
                 HHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSB.........BCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEE.ESSSSSSSHSSSEEEEESS CS
         MCM  18 lvksiapsiyghedvkkaillqlfggvkkkledktk.........lrgdinvllvgdpgtaKsqlLkyveklapravyt.sgkgssaagLtaavvrdee 106
                 +++ +   ++g+++ kka+++++   +k+ + + +            ++ n+ll+g  g++K++l ++++++++    +  +++ ++ag +   v +  
  KIR63421.1  67 ICQFLDNYVVGQDQAKKALAVAVYNHYKRIQAEAAGapgsgsdavELAKSNILLLGPTGCGKTHLAQTLARMLNVPFAIaDATALTEAGYVGEDVENIL 165
                 56667778999999999999999999988776643322222223345789********************99887665415678899999999997777 PP

                 SSSEEEEETHHHHTTTSEEEEESGGGSTCHH CS
         MCM 107 tgefvleaGalvladkGvcciDefdkmkeed 137
                  + +      +  a++G+++iDe+dk+ ++ 
  KIR63421.1 166 LKLIQAADYDIKRAETGIIYIDEVDKIARKS 196
                 7766666678999*************98765 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   5.8e-07   0.00031      46      69 ..     114     137 ..     107     141 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 5.8e-07
   IstB_IS21  46 kkenivllGpsGvGKshlaialgv 69 
                 +k ni+llGp+G GK+hla +l++
  KIR63421.1 114 AKSNILLLGPTGCGKTHLAQTLAR 137
                 578*****************9986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.8e-06   0.00095       1      58 [.     118     190 ..     118     215 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.8e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf................gvnlrdvakenglllevdpealdeskrldedkld 58 
                 Ill G+ G+GKt la+ L+++l++                g+ +  ++ +     ++d +   e+ ++ +d +d
  KIR63421.1 118 ILLLGPTGCGKTHLAQTLARMLNVpfaiadatalteagyvGEDVENILLKLIQAADYDIK-RAETGIIYIDEVD 190
                 99*******************998987666666666666655555555555555555544.4444444444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     2e-05     0.011      25      48 ..     116     139 ..      98     157 .. 0.85
   2 ?   -1.3   0.0       4.5   2.5e+03     113     151 ..     158     196 ..     142     203 .. 0.69
   3 ?   -1.5   0.0       5.1   2.8e+03      70      99 ..     312     340 ..     265     385 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2e-05
      AAA_16  25 elvllsGesGvGKsslvrellral 48 
                 +++ll G+ G+GK+ l+++l+r l
  KIR63421.1 116 SNILLLGPTGCGKTHLAQTLARML 139
                 799*****************9855 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 4.5
      AAA_16 113 gaeasrllellkrllallsrderplvlvlDdlqwadeas 151
                 g++ + +l +l +++++  +++++ ++ +D+++++   s
  KIR63421.1 158 GEDVENILLKLIQAADYDIKRAETGIIYIDEVDKIARKS 196
                 444466777777777555555667999999999988776 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 5.1
      AAA_16  70 salaqalareellrqlldeaesaeleawre 99 
                 ++ ++ l+r + l  +l+e+++a++ ++++
  KIR63421.1 312 ITNVRSLDR-SALVRILTEPRNALVKQYQR 340
                 445666656.44444444444444444443 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0    0.0002      0.11      18      44 ..     111     137 ..      98     154 .. 0.82
   2 ?    3.3   0.0      0.11        59      89     106 ..     176     193 ..     170     199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0002
                      HCTSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat  18 vaktdlsvlitGesGtGKellaraihe 44 
                      v   ++++l++G +G+GK+ la+++ +
       KIR63421.1 111 VELAKSNILLLGPTGCGKTHLAQTLAR 137
                      5567899****************9866 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.11
                      HHHTTTSEEEEETGGGS- CS
  Sigma54_activat  89 fekadgGtlfLDeigelp 106
                      +++a+ G++++De+ ++ 
       KIR63421.1 176 IKRAETGIIYIDEVDKIA 193
                      789***********9986 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.6e-05    0.0085      18      48 ..     114     145 ..      91     161 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.6e-05
                 HTEEEEEEESTTSSHHHHHHHHHHHTT--.-- CS
        TsaE  18 lgdvilLeGdLGaGKTtlvrglakalgve.ev 48 
                 +++ ilL G+ G+GKT+l++ la+ l+v  ++
  KIR63421.1 114 AKSNILLLGPTGCGKTHLAQTLARMLNVPfAI 145
                 2567*********************9986655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.9e-05     0.011       5      77 ..     118     193 ..     114     223 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.9e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklke.......ekktylflDEiqevp 77 
                 +++ G+  +GKT l+++l++ l      +   +    +++ +   e++++++l+++++        ++ ++++DE+ ++ 
  KIR63421.1 118 ILLLGPTGCGKTHLAQTLARMLN---VPFAIADATALTEAGYVG-EDVENILLKLIQAadydikrAETGIIYIDEVDKIA 193
                 7899**************98888...223333333333322222.2344444444322334466788999******9984 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.6   0.00014     0.074      47      89 ..     112     152 ..      63     217 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00014
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  47 klaGravLlaGpsgtGktalaiaiskelgedvpfvalsgsevy 89 
                 +la   +Ll Gp+g Gkt la ++++ l+  vpf++  ++ + 
  KIR63421.1 112 ELAKSNILLLGPTGCGKTHLAQTLARMLN--VPFAIADATALT 152
                 466678**********************8..9**998887765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   4.4e-05     0.024       1      23 [.     118     140 ..     118     175 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.4e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakall 23 
                   i+l Gp+g+GK++la++La+ l 
    KIR63421.1 118 ILLLGPTGCGKTHLAQTLARMLN 140
                   6899***************9987 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   5.9e-05     0.032      12      37 ..     116     141 ..     112     226 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.9e-05
                 SEEEEEESTTSSHHHHHHHHTTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  12 ekvaivGenGaGKStLlkllagllkp 37 
                 + + ++G++G+GK+ L+++la++l+ 
  KIR63421.1 116 SNILLLGPTGCGKTHLAQTLARMLNV 141
                 56889****************99865 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.8e-05     0.037       3      24 ..     118     139 ..     116     146 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.8e-05
                 EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklalaw 24 
                 ++l G+ G+GKT+L+q la+ +
  KIR63421.1 118 ILLLGPTGCGKTHLAQTLARML 139
                 799***************9876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.3e-05     0.023      33      80 ..     115     159 ..     109     195 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.3e-05
       AAA_7  33 kkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqd 80 
                 k ++ll GptG+GKt ++++l + l+   + +++   +a t+a  + +
  KIR63421.1 115 KSNILLLGPTGCGKTHLAQTLARMLN---VPFAIADATALTEAGYVGE 159
                 789*****************999998...4444445555555555555 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.8e-05     0.032       2      22 ..     116     136 ..     115     152 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.8e-05
   PduV-EutP   2 kkilliGkvgsGKttLtqalk 22 
                 ++ill+G++g+GKt L+q+l 
  KIR63421.1 116 SNILLLGPTGCGKTHLAQTLA 136
                 579***************996 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.4e-05      0.04       2      39 ..     115     160 ..     114     212 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.4e-05
      AAA_24   2 klkiliyGpsgiGKTtlakelgpkplfi.........dtekGlksld 39 
                 k +il+ Gp g GKT+la +l  + l +          te+G+   d
  KIR63421.1 115 KSNILLLGPTGCGKTHLAQTL-ARMLNVpfaiadataLTEAGYVGED 160
                 5689*****************.7777665555666665555553333 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.5e-05     0.052     119     154 ..     108     140 ..      61     151 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.5e-05
       T2SSE 119 aevlrkavrerglilvsGgTgsGKttllyallkein 154
                 +++++ a   + +il+ G+Tg GKt l+ +l  ++n
  KIR63421.1 108 SDAVELA---KSNILLLGPTGCGKTHLAQTLARMLN 140
                 5566666...99***************999988877 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00012     0.065      39      70 ..     110     140 ..      84     154 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00012
       Rad17  39 vLesrkkriLLisGPsGCgkstvvkvLskelg 70 
                  +e +k +iLL+ GP+GCgk+   + L++ l 
  KIR63421.1 110 AVELAKSNILLL-GPTGCGKTHLAQTLARMLN 140
                 566676677765.***************9876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00017     0.094       2      30 ..     118     147 ..     118     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00017
      AAA_33   2 vllvGlpGsGKstlaerllkklg.avllss 30 
                 +ll G+ G+GK++la+ l++ l   + ++ 
  KIR63421.1 118 ILLLGPTGCGKTHLAQTLARMLNvPFAIAD 147
                 6789***************99986444444 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00027      0.15      19      83 ..     113     194 ..     109     198 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00027
                      T-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H..........HHHHHH.......TTTSEEEEEE-TT--H CS
  Sigma54_activ_2  19 qsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp..........ldlleq.......akggtLylkdiadlsk 83 
                       +k++++l+G+ G+gk+  A++L+       +i++   l ++           l+l++        a+ g++y+ +++++ +
       KIR63421.1 113 LAKSNILLLGPTGCGKTHLAQTLARMLNVPFAIADATALTEAGyvgedvenilLKLIQAadydikrAETGIIYIDEVDKIAR 194
                      5789*******************99877766666665555432555555555533333333333336888888888877665 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00019       0.1      36     114 ..     117     197 ..      98     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00019
                 -EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHT..T-HHHHHHHHTT-SEEEEE-GGGGTT-HH CS
    Bac_DnaA  36 PlfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrd..kkaeefkeklrkvDvLliDDiqflagkek 114
                  +++ g++G GktHL ++++  +   +  +  + lt   ++ e v+ +     +a+++  k  ++ ++ iD++  +a+k++
  KIR63421.1 117 NILLLGPTGCGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLklIQAADYDIKRAETGIIYIDEVDKIARKSE 197
                 47899******************99999999999999999999999876512566677777778899999***99999985 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00027      0.15       1      26 [.     117     143 ..     117     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00027
      AAA_28   1 kivitGgestGKTtlleaLaar.gypv 26 
                 +i ++G+ ++GKT l++ La++ ++p 
  KIR63421.1 117 NILLLGPTGCGKTHLAQTLARMlNVPF 143
                 589*****************9877764 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00025      0.14       3      70 ..     120     188 ..     118     194 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00025
  Viral_helicase1   3 vhGvpGcGKStlirkllrts.liltvnrptaelltegk...pklpnlsvrtvdsflmalvkstkgkililDE 70 
                        G  GcGK++l ++l+r+  + + +    a +lte+    ++++n   + ++++    ++  +  i+ +DE
       KIR63421.1 120 LLGPTGCGKTHLAQTLARMLnVPFAIAD--ATALTEAGyvgEDVENILLKLIQAADYDIKRA-ETGIIYIDE 188
                      56789**************433322222..23333332466666666666666555554443.455555555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       8.1   4.4e+03       8      20 ..      19      31 ..      16      32 .. 0.84
   2 ?   10.4   0.1    0.0011      0.61       4      34 ..     110     139 ..     108     154 .. 0.85
   3 ?   -0.7   0.0       3.1   1.7e+03      89     115 ..     167     193 ..     143     203 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 8.1
      AAA_19  8 lkekvllvtaGpG 20
                ++++v  ++aGpG
  KIR63421.1 19 SQKQVKKLIAGPG 31
                6788999*****9 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0011
      AAA_19   4 avealkekvllvtaGpGtGKTrvlkhivall 34 
                 av +l+++++l++++ G+GKT++ ++  ++l
  KIR63421.1 110 AV-ELAKSNILLLGPTGCGKTHLAQTLARML 139
                 78.9999**************9988877766 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 3.1
      AAA_19  89 elleeaeeekklqeee.llivDEfqdvd 115
                 +l++ a+ + k ++e+ ++ +DE+  + 
  KIR63421.1 167 KLIQAADYDIK-RAETgIIYIDEVDKIA 193
                 33333222222.24446999***99886 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00055       0.3       2      25 ..     125     148 ..     124     167 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00055
                 TSSHHHHHHHHHHHHTSEEEEHHH CS
         SKI   2 GaGKstvGkllAkklglefiDlDe 25 
                 G+GK+ +++ lA++l+++f  +D 
  KIR63421.1 125 GCGKTHLAQTLARMLNVPFAIADA 148
                 9******************87776 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.032        17       2      24 ..     118     140 ..     117     145 .. 0.89
   2 ?    3.3   0.1      0.13        68      79     112 ..     159     197 ..     148     203 .. 0.80
   3 ?   -2.5   0.0       7.9   4.3e+03     122     165 ..     292     336 ..     285     337 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.032
                 EEEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellk 24 
                 +++ Gp G GKt l + ++++l+
  KIR63421.1 118 ILLLGPTGCGKTHLAQTLARMLN 140
                 7899**************99994 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHH.....HHH-EEEE---STTGGG-H CS
    NTPase_1  79 esfeelalealrkal.....seadviviDEiGkmElksk 112
                 e++e++ l+ ++ a+      e+++i iDE+ k+  ks+
  KIR63421.1 159 EDVENILLKLIQAADydikrAETGIIYIDEVDKIARKSE 197
                 567888888888887777656777*******88877765 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 7.9
                 HTTTSEEEEE--SS-.-SHHHHHHHT-TT-EEEE--TTTTTTHHH CS
    NTPase_1 122 Lksekpvlavihrrk.dlalveeirerkdvkvfevteenrdalle 165
                 + ++    + i++   +l+++ ++r+     ++++  e r+al++
  KIR63421.1 292 MPEDMLKFGLIPEFIgRLPVITNVRSLDRSALVRILTEPRNALVK 336
                 555555566777777788899999999889999999999998876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0047       2.6      33      54 ..     115     136 ..     112     141 .. 0.87
   2 ?    1.0   0.0      0.49   2.6e+02     128     161 ..     167     199 ..     157     219 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0047
      AAA_25  33 gelallaGapgtGKttlaldla 54 
                 ++ +ll G++g+GKt la  la
  KIR63421.1 115 KSNILLLGPTGCGKTHLAQTLA 136
                 56689*************9998 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.49
      AAA_25 128 advdaleaaieevegvrlvviDplsralggdens 161
                   ++a + +i++ ++ + ++iD ++++ + +en 
  KIR63421.1 167 KLIQAADYDIKR-AETGIIYIDEVDKIARKSENP 199
                 567777889999.67************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 3118.90
//
Query:       KIR63422.1  [L=265]
Description: hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.3e-62  209.1   0.0    8.1e-62  208.9   0.0    1.0  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.9   0.0   4.5e-66   8.1e-62       1     260 [.       2     254 ..       2     255 .. 0.95

  Alignments for each domain:
  == domain 1  score: 208.9 bits;  conditional E-value: 4.5e-66
                   EEEEEEBB-STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBSSSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEECCTTEEEEEEE CS
  CN_hydrolase   1 rvAvvQlpqkaadleanlqklleliaeAarkgadLivlPElfitgykeeahfleaAeaglgetlallaalarkngiavvigliereltngklqaynt 97 
                   rvAv+Ql+++  d++anl+ +++l+ +Aa  gadL vlPE+ ++ +   a  ++a e ++g++ +++a++ar+ gi+v +g ++++  +++ +++nt
    KIR63422.1   2 RVAVCQLNSR-DDRAANLAAAEALLVRAAAAGADLAVLPEYVDYLG--TAAGMPAPEPVDGTVGRFFADVARRLGIWVHAGSFHEA-GPDRDHTWNT 94 
                   7********6.7********************************88..7777777889***************************8.6666666*** PP

                   EEEEETTSEEEEEEE-SS--E.ECTTSCECCGHHTSCS-SSS-EEEETTEEEEEEEGGGGGSHHHHHHHHHTT-SEEEEBH.GCCCTCHHHHHHHHH CS
  CN_hydrolase  98 avlldldgklvgkyrKlhLfp.geprpptaverelfepgdgipvfdtpvgkiGaaiCyeigfpellralalkgaeilvnlserapvpksmgppqwel 193
                    +l+d++g+l+g yrK+hL + ++p++ +++e+ ++ pgd+  v+d++++++G++iCy+ +fpel+r la++g   l+     a + +++g ++we+
    KIR63422.1  95 SLLFDRTGTLAGTYRKIHLYDvEIPGRVSYLESATVAPGDKPVVVDVEGVRVGLSICYDLRFPELYRHLATDGGATLLV--VPAAFMVHTGRDHWEV 189
                   ****************************************99999*************************999988888..55999*********** PP

                   HHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEEHHHHHHHH CS
  CN_hydrolase 194 lgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeegvliaeidladvratr 260
                   l rara+en+cfv+aa q+g  ++ ++ ++g S+++dp+G++l++ +    g+ ++++dl+++r +r
    KIR63422.1 190 LLRARAIENQCFVAAAGQTGD-HEPGRTCFGRSMVVDPWGTVLGQVPDGP-GLTVVDLDLDRLRTIR 254
                   *********************.****************************.9**********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2011.32
//
Query:       KIR63423.1  [L=75]
Description: hypothetical protein TK50_21655 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0009   18.5   4.3    0.00099   18.4   4.3    1.0  1  AI-2E_transport  AI-2E family transporter
  ------ inclusion threshold ------
       0.29   11.1   1.9       0.32   10.9   1.9    1.1  1  RseC_MucC        Positive regulator of sigma(E), RseC/MucC
        2.5    7.7   7.0        2.7    7.6   7.0    1.1  1  DUF4131          Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   4.3   1.7e-07   0.00099      21      71 ..      23      73 ..      15      75 .] 0.91

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.7e-07
  AI-2E_transport 21 lllplliAlvlayllnpvvkfLkkrgvkrvlavllvlllllvllvllvlll 71
                      +++l+i++v++ ++   v +L++rg +r++a+ll+++++++ l++l++ll
       KIR63423.1 23 PFWQLVIGAVVVAVILLSVGRLARRGRSRMSAALLITATAIAGLTVLGVLL 73
                     478899******************************************997 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.9   5.4e-05      0.32      62     111 ..      11      69 ..       6      75 .] 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.4e-05
   RseC_MucC  62 sllkaallvYllPllllilgallgsall.........gssellaalgallglvlgfliv 111
                  l + all  llP+  l++ga+++ ++l         g s + aal+  + +++g+ ++
  KIR63423.1  11 PLAEEALLGLLLPFWQLVIGAVVVAVILlsvgrlarrGRSRMSAALLITATAIAGLTVL 69 
                 5778899******************99999***99997777777777777777777665 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   7.0   0.00045       2.7       3      47 ..      22      66 ..      20      75 .] 0.54

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00045
     DUF4131  3 lplalvllalllllllll.llllrrrprrrvllllllllllallgf 47
                lp++ +++++++++ +ll + +l rr r r+  ++ll+ ++a +g+
  KIR63423.1 22 LPFWQLVIGAVVVAVILLsVGRLARRGRSRM-SAALLITATAIAGL 66
                7888888887776666661555444444444.44444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 518.73
//
Query:       KIR63424.1  [L=556]
Description: hypothetical protein TK50_16615 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-05   24.8  11.8    3.2e-05   23.7  11.5    1.6  2  TauE      Sulfite exporter TauE/SafE
  ------ inclusion threshold ------
       0.26   11.3   2.3       0.43   10.6   2.1    1.4  1  DUF1453   Protein of unknown function (DUF1453)


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7  11.5   3.6e-09   3.2e-05      48     153 ..      13     129 ..       8     133 .. 0.80
   2 ?   -2.3   0.0      0.31   2.8e+03      90     112 ..     255     277 ..     248     307 .. 0.60

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.6e-09
        TauE  48 slsgalahrrrgnvdwrlllllllgsliGallGallllllpsel............lkllfgvlllllallmllrkkr....srak..grerrptaill 128
                  +s+a++++r    +wr++++++ g+l  al+G  +++ +  +l            l++l++v+l++ ++lm++++++    +      ++   ++i++
  KIR63424.1  13 RVSQAWRNFR----RWRRARPFW-GGLFTALAGLEIFSTTQMSLsglsfqmgptgfLSWLIPVILVACGMLMWFSPQQrmfyA--IvgAVTAVFSLIGV 104
                 5678888888....4*******9.789999***88877666444455666666666******************887545552..04467788999988 PP

        TauE 129 vligglvGllsGllGiGgGfllvpl 153
                  l g++vGll G++G   Gf  vp+
  KIR63424.1 105 NLGGFFVGLLLGMVGSALGFAWVPA 129
                 888888*****************97 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.31
        TauE  90 ellkllfgvlllllallmllrkk 112
                 +ll + +++l + +a  ++lr +
  KIR63424.1 255 RLLAITLVLLSVSAAGALALRDQ 277
                 45555555555555555555444 PP

>> DUF1453  Protein of unknown function (DUF1453)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.1   4.8e-05      0.43      28      67 ..      63     110 ..      38     120 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.8e-05
     DUF1453  28 akkiilPplfmstGalmfvfpefr........ltllevleallvGalf 67 
                    +++P + ++ G+lm++ p+ r        +t +  l+++ +G +f
  KIR63424.1  63 FLSWLIPVILVACGMLMWFSPQQRmfyaivgaVTAVFSLIGVNLGGFF 110
                 5579*****************999888887776666666666666643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3669.93
//
Query:       KIR63425.1  [L=343]
Description: hypothetical protein TK50_16630 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-41  139.9  23.6    3.5e-21   75.8   7.0    2.0  2  EamA       EamA-like transporter family
     0.0016   17.9   4.5      0.072   12.4   0.6    2.5  2  TPT        Triose-phosphate Transporter family
  ------ inclusion threshold ------
      0.033   14.1   1.4      0.033   14.1   1.4    3.1  3  RseC_MucC  Positive regulator of sigma(E), RseC/MucC
       0.33    9.8   1.9       0.27   10.2   0.2    1.6  2  CRT-like   CRT-like, chloroquine-resistance transporter-like
       0.52   10.1   2.6          2    8.2   0.0    3.1  3  DUF2517    Protein of unknown function (DUF2517)


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   7.0   9.7e-25   3.5e-21       7     136 ..      39     168 ..      33     169 .. 0.92
   2 !   70.3   8.7     5e-23   1.8e-19       2     135 ..     180     318 ..     179     319 .. 0.94

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 9.7e-25
        EamA   7 allaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvft 105
                 +l+ a +w+++f+++k+++r+++pl+lt +r  ++++ ll+ ++l + +l    ++ w+  +++++lg+++ f lf y+ +++++  a++ ++++P+++
  KIR63425.1  39 FLALAAIWGASFLFIKVGVRELHPLHLTLYRVAAGALTLLVALALLRDRL-PREPRIWAHQFVVAALGVAVPFTLFGYGEQRIESMLAGIWNATTPLIV 136
                 688899*******************************9999999988888.3444449999************************************** PP

        EamA 106 lilsvlll.gekltlkqllgivlillGvllil 136
                 l ++vl++  e+lt ++ +g++l+++Gvl++l
  KIR63425.1 137 LPMAVLVFrTERLTTRKAVGLGLGFAGVLVVL 168
                 ********88*******************996 PP

  == domain 2  score: 70.3 bits;  conditional E-value: 5e-23
        EamA   2 lgillallaalfwaiyfvlskillrkv..spltltfvrfliagillliiallkegkl...aklslkdwllllllgllgtvlafllffyalkktsasnas 95 
                  g l+++ aa +++++++++k++++    s l+l++ ++l+a++ l ++ +l +g +     ls+ +++++l lg+lgt laf++ +  ++  +as+as
  KIR63425.1 180 TGQLMCFGAAACYGFAIPYQKRFVAGSadSGLSLSATQLLLATAQLAVVGPLVAGVPplpTDLSPGALASVLALGALGTGLAFVINLRNIRVAGASTAS 278
                 5889******************9777755888*****************988888887899999999******************************** PP

        EamA  96 litslePvftlilsvlllgekltlkqllgivlillGvlli 135
                  +t+l+P+f++++++l l e+lt+ q +g++++l+Gv+++
  KIR63425.1 279 TVTYLVPIFAVLIGALALDERLTWHQPVGALIVLAGVAVT 318
                 *************************************985 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.2    0.0012       4.2     247     288 ..     124     166 ..      57     167 .. 0.86
   2 !   12.4   0.6     2e-05     0.072      64     134 ..     246     317 ..     207     319 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0012
         TPT 247 thsvantvKrvvvIvlsvlvfkn.pvsllnaiGtavaivGvfl 288
                    + n++   +v+ ++vlvf++ ++++ +a+G  ++ +Gv++
  KIR63425.1 124 LAGIWNATTPLIVLPMAVLVFRTeRLTTRKAVGLGLGFAGVLV 166
                 55677888889999*******97369***************85 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2e-05
         TPT  64 flkailpl.alvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGval 134
                  l+++l l al   l+ v     +     S + tv  + PiF+v++ +l l e+l+    +  l++++Gva+
  KIR63425.1 246 ALASVLALgALGTGLAFVINLRNIRVAGASTASTVTYLVPIFAVLIGALALDERLTWHQPVGALIVLAGVAV 317
                 444444442455555555555566666679999*************************************97 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.5      0.37   1.3e+03      73     112 ..      36      85 ..      30     111 .. 0.69
   2 ?   -0.4   0.8      0.29   1.1e+03      73     108 ..     132     168 ..     123     201 .. 0.67
   3 ?   14.1   1.4   9.2e-06     0.033      64     113 ..     275     324 ..     247     333 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.37
   RseC_MucC  73 lPllllilgallgsall..........gssellaalgallglvlgflivr 112
                 lP +l +++++ +s+l+          ++ +l+ ++++ l l++++ ++r
  KIR63425.1  36 LPGFLALAAIWGASFLFikvgvrelhpLHLTLYRVAAGALTLLVALALLR 85 
                 56666666777777666777666655555556666666666665555554 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.29
   RseC_MucC  73 lPllllilgallgsall.gssellaalgallglvlgf 108
                 +Pl++l +++l++ +   ++ +++ + ++++g+++ +
  KIR63425.1 132 TPLIVLPMAVLVFRTERlTTRKAVGLGLGFAGVLVVL 168
                 5777777666666555434455555555555544433 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 9.2e-06
   RseC_MucC  64 lkaallvYllPllllilgallgsallgssellaalgallglvlgflivrl 113
                  +a+ + Yl+P++++++gal+ +  l+ ++ + al+ l+g++++  ++ +
  KIR63425.1 275 STASTVTYLVPIFAVLIGALALDERLTWHQPVGALIVLAGVAVTQGLLGR 324
                 678999**************9999889*************9998776655 PP

>> CRT-like  CRT-like, chloroquine-resistance transporter-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1      0.64   2.3e+03     294     327 ..     135     167 ..      93     170 .. 0.69
   2 ?   10.2   0.2   7.5e-05      0.27      75     138 ..     254     318 ..     239     325 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.64
    CRT-like 294 lrlPltnivfslkfivgkevtplsaldvagllii 327
                 + lP++ +vf  + ++ +++  l +l +ag+l++
  KIR63425.1 135 IVLPMAVLVFRTERLTTRKAVGL-GLGFAGVLVV 167
                 55666666666666655544333.4555555554 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 7.5e-05
    CRT-like  75 gaLDavsgilvvigavstsGs.lqvllnqaiipitllasllllkerysliqylGAlviilgvvvv 138
                 gaL +  +++  +  ++++G  + + ++ ++  + +l+  l l er  + q +GAl++++gv+v+
  KIR63425.1 254 GALGTGLAFVINLRNIRVAGAsTASTVTYLVPIFAVLIGALALDERLTWHQPVGALIVLAGVAVT 318
                 555555555555666777775144555656666789999***********************986 PP

>> DUF2517  Protein of unknown function (DUF2517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00056         2       8      48 ..      93     132 ..      90     137 .. 0.89
   2 ?   -0.6   0.0      0.31   1.1e+03      14      30 ..     286     302 ..     279     305 .. 0.79
   3 ?   -2.0   0.2      0.87   3.1e+03      15      35 ..     309     329 ..     307     331 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00056
     DUF2517   8 rvllRRilvvlvGilAlPvmlfrkdRarFysYLhrvWskts 48 
                 r+++   +v ++G+ A+P+ lf     r  s L  +W+ t+
  KIR63425.1  93 RIWAHQFVVAALGV-AVPFTLFGYGEQRIESMLAGIWNATT 132
                 78888888889995.99********************9885 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.31
     DUF2517  14 ilvvlvGilAlPvmlfr 30 
                 i++vl+G lAl   l +
  KIR63425.1 286 IFAVLIGALALDERLTW 302
                 789*******9766665 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.87
     DUF2517  15 lvvlvGilAlPvmlfrkdRar 35 
                 l+vl+G++    +l r+ Rar
  KIR63425.1 309 LIVLAGVAVTQGLLGRRGRAR 329
                 578899999889999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2617.18
//
Query:       KIR63426.1  [L=973]
Description: ricin B lectin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-61  208.6   0.7    2.3e-61  208.0   0.7    1.2  1  Glyco_hydro81C  Glycosyl hydrolase family 81 C-terminal domai


Domain annotation for each model (and alignments):
>> Glyco_hydro81C  Glycosyl hydrolase family 81 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.0   0.7   1.3e-65   2.3e-61      30     332 ..     397     695 ..     381     713 .. 0.89

  Alignments for each domain:
  == domain 1  score: 208.0 bits;  conditional E-value: 1.3e-65
  Glyco_hydro81C  30 smYfsGKalakfatlvyvvkellkdeelakaalkkLkealerflenk...qklplvYdekwkGvvssagyktdsgaDFGn.tlyNDHhfHygYfv 120
                      +Y++GK l ++a+++  v++l++d+++ ++al+ ++++l+ + + +   + + ++Yd++w+ ++   ++       +G+    NDHhfHygYf+
      KIR63426.1 397 DTYWTGKGLGRAARIA-EVADLVDDTTTRDSALNAIRSTLTDWFTASpgkTAKVFYYDQNWGTLIGYPAS-------YGSdQELNDHHFHYGYFI 483
                     57*************9.8999*********************987543327889***********87744.......4431468*********** PP

  Glyco_hydro81C 121 yaaaviakldpswlek..nkewvntLvrDvanpseedeyfpvsRsfDwyhgHSwakGlfesadGkdqEsssEdvnaayalklwGkvigdaslear 213
                      aaa +ak+dp+w+++  +  +v+ L+rD+ n +++d+ fp +R fD+y gH wa+G  +++ G +qEsssE +n+a al  wG+++gd+++ + 
      KIR63426.1 484 AAAATLAKFDPQWATDarYGGMVDLLIRDADNYDRADTRFPYLRDFDIYAGHDWASGHGSFGAGNNQESSSEGMNFANALIQWGQATGDTAVRDA 578
                     **************9955669************************************************************************** PP

  Glyco_hydro81C 214 gnlmlaiearslqkyflleednkvqpkefignkvaGilfenkvdhttyFgankeyiqgihmlPllpvseli.rskkfvkeeweallaeraekvee 307
                     g  + + +a ++q+y++ +  +++ p+ f +   +G+++ +   ++t+F+a++e+iqgi++lP++    ++ +++++v+ ++ +l+ + ++    
      KIR63426.1 579 GIFLYTTQAAAIQEYWFDH-ADENFPAGFEHST-VGMVWGDGGAYATWFSAEPEMIQGINLLPVTGGHLYLgYDPAYVRTNYAELVRN-NNGQPT 670
                     ***************9755.5568999998766.5******************************9988872566***********99.688899 PP

  Glyco_hydro81C 308 gWkgilyanlalvdpkaayeffsse 332
                      W+ il   +al dp++a++ ++++
      KIR63426.1 671 VWQDILWQFQALGDPATALSNLRAN 695
                     *******************999843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 6446.56
//
Query:       KIR63427.1  [L=88]
Description: hypothetical protein TK50_16650 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 647.32
//
Query:       KIR63428.1  [L=104]
Description: hypothetical protein TK50_16715 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-05   23.9   0.0    4.2e-05   23.6   0.0    1.1  1  DivIVA    DivIVA protein


Domain annotation for each model (and alignments):
>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   2.4e-09   4.2e-05       3      66 ..      31      97 ..      29     102 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.4e-09
                HHHHHH----EEE...EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTXXXXXXXXXXXX CS
      DivIVA  3 plDIknkeFkkkl...rGYdedeVdeFLdqvakdyeallkeneelkekvkeleeklkeykeleetLk 66
                p ++++++F+++    rG d+ +V++FLd va ++ +  +  e+ +++ ++ +++l + ++ ++ ++
  KIR63428.1 31 PAQVRDRRFRRTRlgrRGLDPGDVRRFLDRVALELADAQQAAERARQETAHIKDALRRWQSEQTRIR 97
                77899999999876768***************************************99999888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1207  (0.0673211); expected 358.6 (0.02)
Passed bias filter:                      659  (0.0367561); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 786.96
//
Query:       KIR63429.1  [L=464]
Description: major facilitator transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-48  165.1  60.7      2e-48  165.1  60.7    2.2  2  MFS_1       Major Facilitator Superfamily
    5.3e-07   28.8  22.6    9.7e-07   28.0   6.0    2.3  2  Sugar_tr    Sugar (and other) transporter
      2e-06   26.5   6.2      2e-06   26.5   6.2    2.5  2  MFS_3       Transmembrane secretion effector
      5e-05   22.3  15.4     0.0075   15.2   7.8    2.5  2  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
        0.7    8.1   5.8        5.8    5.1   0.2    2.3  2  OATP        Organic Anion Transporter Polypeptide (OATP) fami
        5.5    7.5  10.1        2.6    8.5   0.8    3.7  3  DUF2583     Protein of unknown function (DUF2583)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.1  60.7   6.7e-52     2e-48       2     352 ..      14     413 ..      13     414 .. 0.86
   2 ?   -3.3   0.3       1.1   3.2e+03      90      96 ..     446     452 ..     423     462 .. 0.49

  Alignments for each domain:
  == domain 1  score: 165.1 bits;  conditional E-value: 6.7e-52
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +la  +++l+++++++alp  l+ dlg++++ +++ + +y l  a+++l++G+l+drfGrrrv+llg+++fa++++l+ +a++  +l+++r+lqG+g++
  KIR63429.1  14 ILASGMVFLDSTVVNVALP-RLGADLGATVAGLQWTVNGYLLMLAAFVLLGGALGDRFGRRRVFLLGVVWFAVASALCGLAQGTGWLVAARFLQGAGGA 111
                 6788999************.******************************************************555555788779************* PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........... 188
                 +l+p++++++   f++++rgraig +s+ ++++++lgp +gg+l+++l+Wr++f+i+ ++++ +++ +l + pe++   +  ++  ++           
  KIR63429.1 112 LLTPGSLSVLQSSFHPDDRGRAIGTWSGLAGVSTALGPFVGGWLIDALSWRWIFFINLPLAVPVVLAALRWAPESRDVDASRTGSGRRrfdvagallga 210
                 ****************************************************************887556665555555555555555*********** PP

       MFS_1 189 .........................................kgtgpaplvpawkallkdpvlw..illialllfffgfsglltllplylqevlglsgll 244
                                                           ++g ++++p  + l+ ++ +    ++++++++  ++ g++++l +ylq v g+s ++
  KIR63429.1 211 lglggvtyalidapargvtslpvlasvlvgvlaavafvlveRRRGDTAMLP--TGLFGSRLFSvlNVFTVVVYA--ALGGFTFFLSVYLQNVVGWS-AM 304
                 **************9999999999998888888888888766666666666..667777755122333333333..5555****************.89 PP

       MFS_1 245 laglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll.vlvliGfglgfvfpsllalasdlappeeagtasglfn 342
                 l+gl+   + ++ ++++  ag+ls r+g+r +l+++ ++++l++l+l  +++  s++  +l ++ l+G+gl +v+++l+a +   +  + ag asg++n
  KIR63429.1 305 LTGLATVPMTVLLLVGSSRAGALSARIGPRLPLTIGPVVAALGLLLLRGVSPGASYWTDVLpGVTLFGLGLTLVVAPLTASVLAAVADRFAGVASGFNN 403
                 9999999999999999*************8888888888888888888777776666666667777********99999999999999*********** PP

       MFS_1 343 tagslggalg 352
                  a+ +gg+l+
  KIR63429.1 404 AASRAGGLLA 413
                 *******997 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.1
       MFS_1  90 vlrvlqG 96 
                 ++ +l+G
  KIR63429.1 446 AGGLLAG 452
                 1111111 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   6.0   3.3e-10   9.7e-07      45     194 ..      42     186 ..      13     190 .. 0.71
   2 !    6.6   8.6   0.00098       2.9      16     155 ..     275     414 ..     232     445 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 3.3e-10
                 ..HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHH CS
    Sugar_tr  45 svlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsly 143
                    + ++v+ +l+  ++  l++g lgdrfGR+ ++l ++v f ++++l+++a+    +  l+++R+l G g  l +  +   ++   +++ Rg+ ++ +
  KIR63429.1  42 VAGLQWTVNGYLLMLAAFVLLGGALGDRFGRRRVFLLGVVWFAVASALCGLAQ---GTGWLVAARFLQGAGGALLTPGSLSVLQSSFHPDDRGRAIGTW 137
                 455566666666666666799********************************...889************9999988766666666666676555554 PP

                 HHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS--- CS
    Sugar_tr 144 qlaitfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPES 194
                      +   ++ ++g  l +  +   wr+ ++++l +a+ ++++   ++PES
  KIR63429.1 138 SGLAGVSTALGPFVGGWLIDALS---WRWIFFINLPLAVPVVLAAlRWAPES 186
                 44444444445555544555555...88888888888887665541577888 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00098
                 HHCGGGTHHHHHHHHTSTT--SHHHHHH....HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH.H-TTTTSS-TGGGGGHHHH CS
    Sugar_tr  16 tgvigafltllkfaknfglsksksskee.ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlq.aaakgknsvevlivgRvlv 112
                 ++++ ++++l +f ++  ++ ++      s++l+gl +  + v  ++Gs  ag l+ r+G +  l i+ v++  g +l  ++++g++ +  ++ g  ++
  KIR63429.1 275 VFTVVVYAALGGFTFFLSVYLQNVV--GwSAMLTGLATVPMTVLLLVGSSRAGALSARIGPRLPLTIGPVVAALGLLLLrGVSPGASYWTDVLPG--VT 369
                 4555555555554444444444432..13799*******************************************98652777766445555555..45 PP

                 HHHHHHHHHHHHHHHHTTS-SCCH..HHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 113 GigvGlasvlvPmyisEiApkklR..galvslyqlaitfGilvaa 155
                  +g+Gl+ v++P+++s +A  + R  g   ++++ a  +G l+a 
  KIR63429.1 370 LFGLGLTLVVAPLTASVLAAVADRfaGVASGFNNAASRAGGLLAV 414
                 566788889**********7766666****************996 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   6.2   6.7e-10     2e-06      60     195 ..      58     188 ..      15     198 .. 0.87
   2 ?   -1.8   6.4      0.26   7.7e+02     257     306 ..     205     254 ..     201     304 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 6.7e-10
       MFS_3  60 llsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAl 158
                  + +l Gal D f rR+v+l + ++ a++s+l  +   +g      l+a  +l g G al +P    +++   + +d   A+   s    ++ + GP +
  KIR63429.1  58 AFVLLGGALGDRFGRRRVFLLGVVWFAVASALCGLAQGTGW-----LVAARFLQGAGGALLTPGSLSVLQSSFHPDDRGRAIGTWSGLAGVSTALGPFV 151
                 456899************************99988887774.....68999***********************************999********** PP

       MFS_3 159 gGvlvaavGaalafavnalsylalivallrwkrevrk 195
                 gG l+ a+   + f +n    + +++a lrw +e r 
  KIR63429.1 152 GGWLIDALSWRWIFFINLPLAVPVVLAALRWAPESRD 188
                 *****************98888888888888777654 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.26
       MFS_3 257 GillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalass 306
                 G llgalG+G ++ al+ +  R + s   l ++ + +lA+v+++l   ++
  KIR63429.1 205 GALLGALGLGGVTYALIDAPARGVTSLPVLASVLVGVLAAVAFVLVERRR 254
                 99*****************9999999998888888888888877755555 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   7.8   2.5e-06    0.0075     260     383 ..      41     165 ..      31     167 .. 0.89
   2 !   11.4   0.8   3.5e-05       0.1       4      74 ..     273     344 ..     270     361 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.5e-06
  MFS_1_like 260 tllGslval.gvvaeiplf.ffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsg 356
                 t++G  +++ g ++ +  f +++  l +++G +++ +++++ +++   l ++ + + +++ + +L+g+  +ll     ++ +  + +  +++ +g  sg
  KIR63429.1  41 TVAGLQWTVnGYLLMLAAFvLLGGALGDRFGRRRVFLLGVVWFAVASALCGLAQGTGWLVAARFLQGAGGALLTPGSLSVLQSSFHPDDRGRAIGTWSG 139
                 5667777773345555555157899************************************************************************** PP

  MFS_1_like 357 lyfglGralGsliGGllwdlksaiflF 383
                 l  g+ +alG ++GG l+d  s +++F
  KIR63429.1 140 L-AGVSTALGPFVGGWLIDALSWRWIF 165
                 9.8****************99999988 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.5e-05
  MFS_1_like   4 lkilyFfffaalgsllPYltiylk.skglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslll 74 
                 l ++  +++aalg++  +l++yl+   g +a   g+ t+ + ++ ++++   g+l+ r+g r ++ i  +++
  KIR63429.1 273 LNVFTVVVYAALGGFTFFLSVYLQnVVGWSAMLTGLATVPMTVLLLVGSSRAGALSARIGPRLPLTIGPVVA 344
                 66777899***************9558********************************9999976544444 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2    0.0019       5.8     134     191 ..      98     155 ..      78     162 .. 0.90
   2 ?    5.0   1.2     0.002       6.1     290     358 ..     264     331 ..     254     351 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0019
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 134 lfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGsll 191
                 ++++a +l+G+G++++ +  +s +  + ++ +    +g+++ l+ +  alG ++G+ l
  KIR63429.1  98 WLVAARFLQGAGGALLTPGSLSVLQSSFHPDDRGRAIGTWSGLAGVSTALGPFVGGWL 155
                 6899***********************************************9999876 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.002
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxx RF
        OATP 290 llknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaa...lGillgGllvkkl 358
                 l+ +++f ++ + +v+ + ++ Gf  Fl+ yl++  + sa    +ltG++++p+ +   +G   +G l  ++
  KIR63429.1 264 LFGSRLFSVLNVFTVVVYAALGGFTFFLSVYLQNVVGWSA----MLTGLATVPMTVlllVGSSRAGALSARI 331
                 5667888889999999999***************999987....5666666665542224555566665555 PP

>> DUF2583  Protein of unknown function (DUF2583)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.9       1.5   4.6e+03      10      62 ..      51     103 ..      40     107 .. 0.61
   2 ?    3.1   0.0     0.044   1.3e+02       9      33 ..     366     390 ..     360     399 .. 0.87
   3 ?    8.5   0.8   0.00087       2.6      28      65 ..     415     452 ..     408     457 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.5
     DUF2583  10 GnvlmglGlllmvaslaysvl.nqlpelelpellaeaallgifiGallWlaGar 62 
                 G +lm   ++l+ ++l+      +++ l++  + +  al g+  G+  Wl+ ar
  KIR63429.1  51 GYLLMLAAFVLLGGALGDRFGrRRVFLLGVVWFAVASALCGLAQGT-GWLVAAR 103
                 4555555555555555555531356666666666666666666664.4666665 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.044
     DUF2583   9 lGnvlmglGlllmvaslaysvlnql 33 
                  G +l glGl l+va l+ svl+ +
  KIR63429.1 366 PGVTLFGLGLTLVVAPLTASVLAAV 390
                 5889****************99876 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00087
     DUF2583  28 svlnqlpelelpellaeaallgifiGallWlaGarvgG 65 
                 + l  l  l+ + + + aal   f Ga+lW aG  ++G
  KIR63429.1 415 AALPLLVGLSGTGYEQAAALTDAFRGAMLWCAGGLLAG 452
                 556667778888899999************99998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3465.19
//
Query:       KIR63430.1  [L=258]
Description: hypothetical protein TK50_16800 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1733.33
//
Query:       KIR63431.1  [L=151]
Description: hypothetical protein TK50_16830 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-27   94.2   3.1    7.6e-27   93.9   3.1    1.1  1  LTD       Lamin Tail Domain
  ------ inclusion threshold ------
       0.15   13.1   4.3        1.3   10.2   0.3    2.3  2  PPC       Bacterial pre-peptidase C-terminal domain


Domain annotation for each model (and alignments):
>> LTD  Lamin Tail Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   3.1   8.5e-31   7.6e-27       2     111 ..      27     143 ..      26     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 8.5e-31
         LTD   2 aaaagdvvIsevmedgagnnan.......efvelyNtsskavdLsgwkledasge.ytfpngtgtlaageyvvvwsgsgttsasngskasssavwnngg 92 
                 +aa++ + I++ +++++g++++       e+v+l+N+ +++v+L+ w+l+d+s++ ytf++    laag++v++++g+gt+++++ +++s++++wnn+g
  KIR63431.1  27 QAATPAIQITKAYYNSPGTDDRsnsslnaEYVKLTNRKTTTVNLKSWTLRDKSSHiYTFTSDF-KLAAGASVTIHTGKGTNTSTHRYWGSGAYIWNNTG 124
                 7899***************999****************************************9.*********************************** PP

         LTD  93 davaLydasgevvdsvgyg 111
                 d+++ +d++g+++ds+++g
  KIR63431.1 125 DTAYVRDTAGKTIDSCSWG 143
                 ******************8 PP

>> PPC  Bacterial pre-peptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.4    0.0087        78       9      58 ..      14      62 ..      11      70 .. 0.78
   2 ?   10.2   0.3   0.00015       1.3       7      45 ..      89     144 ..      80     150 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0087
                E-TT-EEEEEES-TT..SEEEEE-TT..-SS-EE-STT-TTS-TTS-EE- CS
         PPC  9 vpagdsltididggtidldLylldsngtsvaaydansapsgsdeyiefta 58
                v++g+slt++    ++   +++ ++  +s  + d++s++s + ey++ t+
  KIR63431.1 14 VTVGGSLTLAAPAQAATPAIQITKAYYNSPGT-DDRSNSSLNAEYVKLTN 62
                78999999998888876667777777777777.77898888999999987 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00015
                 EEE-TT-EEEEEES-TT..................SE..EEEE-TT..-SS-EE-ST CS
         PPC   7 fevpagdsltididggti................dld..Lylldsngtsvaaydans 45 
                 f ++ag s+ti +  gt+                      y++d  g ++++ +++s
  KIR63431.1  89 FKLAAGASVTIHTGKGTNtsthrywgsgayiwnnT-GdtAYVRDTAGKTIDSCSWGS 144
                 89***********9999777788888888888743.346778888888888877777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.49
# Mc/sec: 933.91
//
Query:       KIR63432.1  [L=65]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-06   27.5   0.1    3.1e-06   27.3   0.1    1.1  1  HTH_17    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   1.7e-10   3.1e-06       1      50 [.       9      58 ..       9      59 .. 0.96

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.7e-10
      HTH_17  1 lltveEaAelLgvsrstvyrlirrgelpaakiGrrwriprsdleewlekr 50
                +++++E+A lLg + s+v   i +gel+  k G+ +r+  + ++e+ +++
  KIR63432.1  9 WYSPAEVAVLLGFGISKVKMKIATGELRSIKDGKYRRVLPEWVDEYVREQ 58
                9******************99*************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 429.52
//
Query:       KIR63433.1  [L=214]
Description: hypothetical protein TK50_16905 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-22   79.4   0.0    2.9e-22   79.1   0.0    1.1  1  DUF218    DUF218 domain


Domain annotation for each model (and alignments):
>> DUF218  DUF218 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.0   1.6e-26   2.9e-22       1     106 [.      40     168 ..      40     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 1.6e-26
      DUF218   1 daivVLGaal........pllaeRldeaaelyrag..k.iivsGggadedvseaeamaeylrelgvpeeailledrsrnTeenarfskellkersillV 88 
                 d+++VLG+++        + la Rl++aa+l r+g  + ++vsG+g++ +  e  +m  yl+elgv++ +++ ++ + +T++++++++e+ + +++l+V
  KIR63433.1  40 DVVIVLGTEVaadrrrpaDRLAGRLETAAALVRDGraRvVLVSGDGGGASGDEPTVMTSYLVELGVDPGRVVADPFGLDTYDSCARAREVYGVTRALIV 138
                 89*****65566777888899**************7626*****9778999****************99**********************6559**** PP

      DUF218  89 TsafHmpRalllfrkag............a 106
                 T+ +H+ Ra+ l+r +g            +
  KIR63433.1 139 TQSYHLSRAVTLCRGLGvdvdgvaarcagC 168
                 ****************85555543222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1537.02
//
Query:       KIR63434.1  [L=153]
Description: LysR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-28   97.4   0.3    9.3e-28   97.2   0.3    1.0  1  YjgF_endoribonc  YjgF/chorismate_mutase-like, putative endori
    1.3e-23   83.3   0.1    1.6e-23   83.0   0.1    1.1  1  Ribonuc_L-PSP    Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> YjgF_endoribonc  YjgF/chorismate_mutase-like, putative endoribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.3     1e-31   9.3e-28       3     148 .]       8     152 ..       6     152 .. 0.96

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 1e-31
                      HHHHTT---------SSSS-SEEEETTEEEE--B--EETTEE--BS-BTTTB-HHHHHHHHHHHHHHHHHHHHHHHSSGGG-SEEEEEEEEE-B CS
  YjgF_endoribonc   3 rlvalGlelpkvaaalGayepyaivasflttsfqlpylqekllyvGllGddvsvseGiaaarlaalnalaqlkeaaGelarvkrlirleGvlnv 96 
                      +l  lGl lp+v   + +y p  + ++++  s+qlp  ++kll  G++G+ vs+++    a+ +aln+la +   +G l +v +++++ G ++ 
       KIR63434.1   8 KLAELGLTLPEVVPPVASYVPAVQSGQHVFVSGQLPMADGKLLATGKVGAGVSAEQAKDLAQRCALNGLAAVDALVG-LENVVKVVKVTGFVAS 100
                      78899*****************************************************************9976665.89999*********** PP

                      -TT---HHHHHHHHHHHHHHHHGGGG--EEEEEE-SS-GGGBSEEEEEEEE- CS
  YjgF_endoribonc  97 tqdyiempkvldaasdlllevlGeaGrhartiltnhvmplnalvllylfael 148
                         +  +p v+++asdl+  v+GeaGrhar +++   +pl+a+v + l  e+
       KIR63434.1 101 APGFTGQPGVINGASDLFGAVFGEAGRHARSAVGVSELPLDAPVEVELIVEV 152
                      **********************************************999885 PP

>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.1   1.8e-27   1.6e-23       7     121 .]      22     152 ..      17     152 .. 0.90

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 1.8e-27
                    TSSS-BSEEEETTEEEEEEE-SB-T....TTSCB..-SSHHHHHHHHHHHHHHHHHHTT--GGG.....EEEEEEEESSGGGHHHHHHHHHHHSSS CS
  Ribonuc_L-PSP   7 aaapYsqavkagnlvyvsGqlpldp....etgelv.egdveeqtrqalenlkavLaaagaslsd.....vVkvtvFladiedfaevnevyaeafde 92 
                    ++a+Y++av++g+ v+vsGqlp+ +    +tg+++   ++e+ +  a +++ + Laa++a ++      vVkvt F+a+++ f+ +  v+++a+d 
     KIR63434.1  22 PVASYVPAVQSGQHVFVSGQLPMADgkllATGKVGaGVSAEQAKDLAQRCALNGLAAVDALVGLenvvkVVKVTGFVASAPGFTGQPGVINGASDL 117
                    899*********************999*9******666666666778899*********8655455777**************************9 PP

                    S.....T.S--EEEEEE-SBSGGG-SEEEEEEEE- CS
  Ribonuc_L-PSP  93 l.....k.eaParsaveVaaLpkgakvEIeaiavv 121
                          + +++arsav+V++Lp +a vE+e+i++v
     KIR63434.1 118 FgavfgEaGRHARSAVGVSELPLDAPVEVELIVEV 152
                    9999986799**********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1142.18
//
Query:       KIR63435.1  [L=381]
Description: capsular biosynthesis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-48  164.9   0.0    6.7e-48  163.4   0.0    1.6  1  PGA_cap   Bacterial capsule synthesis protein PGA_cap


Domain annotation for each model (and alignments):
>> PGA_cap  Bacterial capsule synthesis protein PGA_cap
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   0.0   3.7e-52   6.7e-48       2     254 ..      67     301 ..      66     303 .. 0.85

  Alignments for each domain:
  == domain 1  score: 163.4 bits;  conditional E-value: 3.7e-52
     PGA_cap   2 lafvGDvmlgralkqalkekeydfdpifaevkpllraaDlaivNlEtpv....teege.plsgk..plfrappevlaalkeagfdvvslAnNHalDyge 93 
                 l+++GD+++g+a ++  ++   +++  f++v++ l aaDl+++NlE p+    + +g+  +++   + frappe++a l++ gf++++ AnNH +Dyg+
  KIR63435.1  67 LSATGDIIMGNAPNRLPPN---GGKGFFDSVQKAL-AADLVMGNLEEPLtvdtG-TGKcGANSTrcFQFRAPPEYAAHLRDGGFELLNQANNHGYDYGP 160
                 89**********9995444...8888899999777.69***********88852.33323333357********************************* PP

     PGA_cap  94 eGlletlealdeagikhaGagrseaearkpailevkgirvallaytegtnstaeakagepnseeakeeeagaskerpgvaskdleklladirearkead 192
                 +G ++t +al++++++h+G      +  ++ ++ev+g+++a+ ++++               ++++                d ++  a i++a++ ad
  KIR63435.1 161 KGYRNTQAALEKYDLAHTG------APDQITVVEVEGVKIAVAGFSSY-------------VWSNSL--------------VDIDAASAVIKKAATMAD 226
                 *******************......456789***************33.............333322..............2459999*******88** PP

     PGA_cap 193 lvivslHwgeeyqek.............padeqrelaralidaGadvviGhhpHvlqgieiykgklifYSlGNfi 254
                 lv+v +H+g+e  +k              + +  ++ +a+idaGad+v+Gh+pHvl+g+e y+g+li+YSlGNf 
  KIR63435.1 227 LVVVQVHMGGEGADKtrvrpgtemflgeNRGDPIKFSHAMIDAGADLVVGHGPHVLRGMEFYQGRLIAYSLGNFA 301
                 ***********6666666666666666599999*****************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2627.07
//
Query:       KIR63436.1  [L=671]
Description: cell division protein FtsH [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-70  234.7   0.3    1.3e-69  233.9   0.3    1.4  1  Peptidase_M41  Peptidase family M41
    1.5e-44  151.6   0.0    2.8e-44  150.8   0.0    1.5  1  AAA            ATPase family associated with various cellular
    9.7e-15   54.1   0.2    2.4e-14   52.8   0.2    1.7  1  AAA_lid_3      AAA+ lid domain
    1.3e-06   28.7   0.1    9.8e-05   22.7   0.0    2.6  2  FtsH_ext       FtsH Extracellular
    0.00018   20.9   0.4    0.00043   19.6   0.0    1.7  2  TIP49          TIP49 P-loop domain
    0.00023   21.0   0.0    0.00063   19.5   0.0    1.8  1  RuvB_N         Holliday junction DNA helicase RuvB P-loop dom
    0.00044   20.7   0.1     0.0013   19.1   0.1    2.0  1  AAA_16         AAA ATPase domain
    0.00055   19.9   0.1     0.0062   16.5   0.0    2.8  2  AAA_5          AAA domain (dynein-related subfamily)
    0.00096   19.4   0.0      0.032   14.5   0.0    2.8  1  AAA_22         AAA domain
     0.0058   16.4   0.0      0.011   15.4   0.0    1.4  1  IstB_IS21      IstB-like ATP binding protein
     0.0076   15.8   0.4        1.3    8.6   0.0    3.0  2  AAA_25         AAA domain
  ------ inclusion threshold ------
      0.012   15.8   0.0      0.043   14.0   0.0    2.0  1  AAA_33         AAA domain
      0.025   14.0   0.1      0.047   13.1   0.1    1.4  1  Mg_chelatase   Magnesium chelatase, subunit ChlI
      0.037   14.0   0.0      0.082   12.9   0.0    1.5  1  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
      0.088   13.1   0.0       0.23   11.7   0.0    1.7  1  AAA_28         AAA domain
       0.11   12.7   0.1       0.52   10.4   0.0    2.2  2  AAA_2          AAA domain (Cdc48 subfamily)
       0.11   13.1   0.0       0.25   11.9   0.0    1.7  1  AAA_18         AAA domain
       0.13   12.7   0.0       0.34   11.3   0.0    1.8  1  AAA_17         AAA domain
       0.13   11.7   0.2       0.34   10.3   0.2    1.6  1  PhoH           PhoH-like protein
       0.33   11.3   1.3        6.8    7.0   0.3    2.7  2  AAA_19         AAA domain


Domain annotation for each model (and alignments):
>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.9   0.3   1.5e-72   1.3e-69       1     191 []     421     610 ..     421     610 .. 0.98

  Alignments for each domain:
  == domain 1  score: 233.9 bits;  conditional E-value: 1.5e-72
                    XX--HHHHHHHHHHHHHHHHHHCCSSS-S-B--EES--TTS-----------TSS--BHHHHHHHHHHHHHHHHHHHHHHHS-BGGGHHHHHHHHH CS
  Peptidase_M41   1 rvisekekklvAyHEaGHalvglllkeadpveKvtiiPRgqalGltlslPeedklsltkeellarlavllGGraaEelifgevttGasnDlekatk 96 
                    rv+s++ekk++AyHE+GHalv++ l++a pv+Kvti+ Rg++lG+tl+lP+edk++ t++e++++la +lGGraaEel+f e ttGa nD+ekat 
     KIR63436.1 421 RVMSDQEKKITAYHEGGHALVAWALPHAAPVHKVTILSRGRSLGHTLVLPTEDKYTQTRAEMVDTLAYALGGRAAEELVFHEPTTGAGNDIEKATG 516
                    689********************************************************************************************* PP

                    HHHHHHHTS---TTT-S--------..----.------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEE-HHHHHHH CS
  Peptidase_M41  97 iarkmvtefGmsdklGpvsleeeeeeevflgkelkkekelseetaeeideevkelveeayerakeileekreelealaeaLlekEtldaeeieel 191
                    +ar+m+t++Gms+klG +++ ++ + e+flg+++ +e+++s+++a+eid+e+++l+e a+++a+eil e+r+ l++++ +L+ekEtl++ ++ ++
     KIR63436.1 517 LARAMITQYGMSSKLGAIKYGTSGD-EPFLGRNMGHERDYSDAVAAEIDNEMRALIELAHDEAWEILVEYRDVLDNIVLELIEKETLSTADMARI 610
                    **********************999.89*************************************************************999875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.8   0.0   3.1e-47   2.8e-44       1     130 [.     208     339 ..     208     341 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.8 bits;  conditional E-value: 3.1e-47
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vll+GppGtGKTlla+ava e+gv+f++isgs++++++vg +++++r+lf++ak++a p i+f+DEida++++r    g+ ++e+e+++nqLl e+dg+
  KIR63436.1 208 VLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKSNA-PAIVFVDEIDAVGRHRgagMGGGHDEREQTLNQLLVEMDGF 305
                 79******************************************************9.*****************99999******************* PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEET CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkiei 130
                 ++k + vi+i+atnrpd ldpallr gRfdr+i +
  KIR63436.1 306 DTKGG-VILIAATNRPDILDPALLRpGRFDRQIPV 339
                 **755.*************************9976 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.2   2.7e-17   2.4e-14       1      45 []     363     407 ..     363     407 .. 0.98

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 2.7e-17
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfee 45 
                 dvdl+ +A+rT+G+SGADla++++eAall+ r +  +it + +ee
  KIR63436.1 363 DVDLDSVARRTPGFSGADLANVINEAALLTARKDQRAITNDSLEE 407
                 9***************************************99987 PP

>> FtsH_ext  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.1e-07   9.8e-05       2      76 ..      11      78 ..      10     103 .. 0.87
   2 ?    3.2   0.0      0.12   1.1e+02       3      32 ..     128     154 ..     126     176 .. 0.65

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.1e-07
    FtsH_ext  2 llwlllallllllllslfggsgtgstkeisyseFledleqgnvekvvvqestisalirrptgdgvsttkkgnstt 76
                ++w++l++l  ++l++l  ++ ++s+ +++ s  l++l + +++k+v+q+++++     + +d++++tk g+ tt
  KIR63436.1 11 VVWIILVILGAVVLSQL--FTAGPSYHRVDTSVALDQLHTAKIKKAVFQDKEQT-----LQLDLENKTKFGDTTT 78
                68999999999999998..89999*************************99999.....8888888777777666 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.12
    FtsH_ext   3 lwlllallllllllslfggsgtgstkeisy 32 
                 l++ l++llll++ s    +++g ++ +++
  KIR63436.1 128 LPIALLVLLLLFFMS---QMQGGGSRVLNF 154
                 555555555555555...666666655554 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.7e-07   0.00043      51      88 ..     206     241 ..     196     247 .. 0.90
   2 ?   -2.8   0.0         3   2.7e+03     230     273 ..     557     600 ..     554     603 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.7e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsev 88 
                 ++vLl Gp+gtGkt la a++ e g  vpf ++sgs++
  KIR63436.1 206 KGVLLFGPPGTGKTLLARAVAGEAG--VPFYSISGSDF 241
                 89*********************98..*********86 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3
                 XXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 230 Dvanarpqdllslllqllkskkteiteklreeinkkvakyveeg 273
                 D+++a+ ++ +  l +l + +  ei  + r+ ++++v + +e++
  KIR63436.1 557 DAVAAEIDNEMRALIELAHDEAWEILVEYRDVLDNIVLELIEKE 600
                 55666666677777788999999999999999999999998875 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   7.1e-07   0.00063      34      69 ..     206     241 ..     170     280 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 7.1e-07
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvklkitsgPvl 69 
                   vll+GpPG Gkt la+ +a e gv + + sg   
  KIR63436.1 206 KGVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDF 241
                 569************************999998643 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   1.5e-06    0.0013      23      95 ..     198     266 ..     182     411 .. 0.60

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.5e-06
      AAA_16  23 rp......elvllsGesGvGKsslvrellralekd..............ggiflrgkcdqlesaipysalaqalareellrqlldeaesaele 95 
                 +         vll G++G+GK+ l+r+++ ++                 g                      +  + + +r+l ++a+s++++
  KIR63436.1 198 QAlgakipKGVLLFGPPGTGKTLLARAVAGEAGVPfysisgsdfvemfvG----------------------VG-A-SRVRDLFEQAKSNAPA 266
                 3334444499******************9766555332223333332221......................22.2.4444444443333333 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       5.5   4.9e+03      35      64 ..      75     104 ..      70     113 .. 0.87
   2 !   16.5   0.0   6.9e-06    0.0062       1      98 [.     207     297 ..     207     330 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.5
                 T--HHHHH--B--.........-------- CS
       AAA_5  35 dtteedlkgrreikngttslvdsplvraar 64 
                 dtt++ +  +  ++ g++++ d  + +aa+
  KIR63436.1  75 DTTTDRIEAQFPYEVGDEVWNDVLAAKAAN 104
                 79999999999999999***9998888876 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 6.9e-06
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrllle 97 
                 +vlL GppGtgK+ la+ +a   + ++  + ++++ +    +g  ++           l ++a+   ++i+++DE++ + ++  + +    +er+  l+
  KIR63436.1 207 GVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRV---------RDLFEQAKsnAPAIVFVDEIDAVGRHRGAGMGGGHDEREQTLN 296
                 59*****************9998888888888887665555555554.........5566666655667777777776666666666666666665554 PP

                 - CS
       AAA_5  98 e 98 
                 +
  KIR63436.1 297 Q 297
                 4 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.6e-05     0.032       8      29 ..     208     229 ..     205     323 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.6e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 ++++G++GtGKT+l+r ++ ++
  KIR63436.1 208 VLLFGPPGTGKTLLARAVAGEA 229
                 589*************998776 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.3e-05     0.011      49      88 ..     207     246 ..     201     277 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvrvedLve 88 
                 +++l+Gp+G+GK+ la a++ ea    +s++     +++ 
  KIR63436.1 207 GVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFV 246
                 799****************998866666665555555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0014       1.3      36      54 ..     208     226 ..     176     235 .. 0.86
   2 ?    4.1   0.1     0.033        29      83     140 ..     560     617 ..     541     621 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0014
      AAA_25  36 allaGapgtGKttlaldla 54 
                 +ll+G+pgtGKt la  +a
  KIR63436.1 208 VLLFGPPGTGKTLLARAVA 226
                 68***********996655 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.033
      AAA_25  83 edelrrRlravgealrddarllvldlagv.eslpLfakdrggtlltadvdaleaaieev 140
                 ++e+ + +ra+ e + d a++ ++ + +v +++ +++++ ++tl tad++++ a++ ++
  KIR63436.1 560 AAEIDNEMRALIELAHDEAWEILVEYRDVlDNI-VLELIEKETLSTADMARICARVVKR 617
                 457778888888888899***********6665.5699**************9999875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.8e-05     0.043       2      35 ..     208     243 ..     208     281 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.8e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrr 35 
                 vll G+pG+GK+ la+ ++ + g  ++ +s  ++ +
  KIR63436.1 208 VLLFGPPGTGKTLLARAVAGEAGvpFYSISGSDFVE 243
                 7899***************99997766666666555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   5.3e-05     0.047      25      43 ..     208     226 ..     193     229 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.3e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +ll+GppG+GKt+la++++
    KIR63436.1 208 VLLFGPPGTGKTLLARAVA 226
                   89*************9875 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.2e-05     0.082       3      46 ..     193     232 ..     183     242 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.2e-05
                 SHHHHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE   3 seeetealgkklakalgdvilLeGdLGaGKTtlvrglakalgve 46 
                 ++++ +alg+k+ k     +lL G+ G+GKT l+r++a + gv 
  KIR63436.1 193 NPAKYQALGAKIPK----GVLLFGPPGTGKTLLARAVAGEAGVP 232
                 56667777777766....8*******************999885 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00026      0.23       2      27 ..     208     234 ..     207     262 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00026
      AAA_28   2 ivitGgestGKTtlleaLa.argypvv 27 
                 + ++G+++tGKT l++a a + g+p +
  KIR63436.1 208 VLLFGPPGTGKTLLARAVAgEAGVPFY 234
                 6799***************55588765 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       9.7   8.7e+03      21      58 ..     156     192 ..     140     199 .. 0.49
   2 ?   10.4   0.0   0.00058      0.52       6      83 ..     208     279 ..     205     308 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 9.7
                 HHHHHHTT-....-EEEEEGGG-------THHHHHHHH CS
       AAA_2  21 kalaellfvkkekkliradaselleeeevehlvsrlig 58 
                 k+ a+++  k++ k + ad     e+ e  h ++ +++
  KIR63436.1 156 KSKAKMIT-KDTPKTTFADVAGAEEAVEELHEIKDFLQ 192
                 33344444.44444444444444444444455555555 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00058
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG---- CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpk 83 
                 +ll gp g+Gkt+la+a+a    v    ++  +  s++ e   +   v    +   + +++ +    iv++DEid + ++
  KIR63436.1 208 VLLFGPPGTGKTLLARAVAGEAGV----PFYSISGSDFVE---MFVGVGASRVRDLFEQAKSN-ApaIVFVDEIDAVGRH 279
                 46779*****************98....999999999999...33333333333333333332.257********99886 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00028      0.25       1      24 [.     208     231 ..     208     278 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00028
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf 24 
                 +ll G+pG+GKt la++++ + g+
  KIR63436.1 208 VLLFGPPGTGKTLLARAVAGEAGV 231
                 799**************9877654 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00037      0.34       1      40 [.     211     251 ..     211     286 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00037
                 EE-TTSSHHHHHHHHHHHHTEEEEEH.HHHHHHHHHTTTSH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsa.Gdllreeakrggla 40 
                 +G+PG GK+ +++ ++ + g++++s  G+ + e+    g++
  KIR63436.1 211 FGPPGTGKTLLARAVAGEAGVPFYSIsGSDFVEMFVGVGAS 251
                 6*********************9987555555666555555 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00038      0.34      22      40 ..     208     226 ..     194     231 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00038
                 EEEE--TTSSTTHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavala 40 
                 v  +Gp GtGKt+la a+a
  KIR63436.1 208 VLLFGPPGTGKTLLARAVA 226
                 6789***********9998 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.3    0.0075       6.8      11      28 ..     206     223 ..     197     230 .. 0.79
   2 ?    2.0   0.0      0.26   2.4e+02      10      68 ..     452     510 ..     446     607 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0075
      AAA_19  11 kvllvtaGpGtGKTrvlk 28 
                 k +l+ ++pGtGKT + +
  KIR63436.1 206 KGVLLFGPPGTGKTLLAR 223
                 55799*********8765 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.26
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakel..rerlaalgae 68 
                 +kv ++  G   G T vl +  ++ + + ++   + l+ a+ grAa+el  +e ++++g +
  KIR63436.1 452 HKVTILSRGRSLGHTLVLPTEDKYTQTRAEM--VDTLAYALGGRAAEELvfHEPTTGAGND 510
                 5677777777788888888888888777765..89999999*****998334555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      704  (0.039266); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 4738.93
//
Query:       KIR63437.1  [L=178]
Description: hypothetical protein TK50_17200 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-43  147.9  19.7    2.2e-43  147.6  19.7    1.0  1  DUF3180   Protein of unknown function (DUF3180)
  ------ inclusion threshold ------
        1.7    9.1   6.4       0.18   12.3   0.6    2.0  2  DUF4231   Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> DUF3180  Protein of unknown function (DUF3180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6  19.7   2.5e-47   2.2e-43       1     135 []      27     160 ..      27     160 .. 0.99

  Alignments for each domain:
  == domain 1  score: 147.6 bits;  conditional E-value: 2.5e-47
     DUF3180   1 LvaaavvaavagwllvrvsygslpplpwlaavvllvlavvelvlAlqvrrrirgrpgarqlepltaarllvlAkAsalvGAllaGvyaGllvyllrage 99 
                 Lv+a+++aa+++wll+++ yg +p+lpwl +v+l++lav+e+++A+++r+ri++rpg+ +++pl++ar++vlAkAsal+GA++aG++aGl+ +l+ +  
  KIR63437.1  27 LVVAGLAAAAVAWLLISTLYGGFPRLPWLPVVTLAALAVLEAYAAVNTRSRIERRPGRDPVNPLLVARFVVLAKASALAGAIFAGWCAGLTGWLF-VEP 124
                 89*********************************************************************************************.99* PP

     DUF3180 100 lpaaaedllaavvavlaavalvvaglwlErlCrvPp 135
                 ++aaaed +aa++++laa+alv+a+lwlEr+CrvP+
  KIR63437.1 125 TRAAAEDRPAAGAGLLAALALVAAALWLERSCRVPE 160
                 ***********************************6 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6     2e-05      0.18      20      66 ..      22      72 ..      15      77 .. 0.89
   2 ?   -0.4   0.8      0.18   1.6e+03      36      62 ..     114     148 ..      90     154 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2e-05
     DUF4231 20 lrlitivlgallpilvs....sklgagvsvlkiltallsalvailaaleef 66
                +r+ t+v++ l++++v+    s+l  g++ l++l+++  a++a+l+a+ ++
  KIR63437.1 22 TRISTLVVAGLAAAAVAwlliSTLYGGFPRLPWLPVVTLAALAVLEAYAAV 72
                689999999999999999999999**********************99876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.18
     DUF4231  36 s........sklgagvsvlkiltallsalvailaa 62 
                 +        + ++a ++  +++ a+l a++a++aa
  KIR63437.1 114 AgltgwlfvEPTRAAAEDRPAAGAGLLAALALVAA 148
                 13444455533444445555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1310.74
//
Query:       KIR63438.1  [L=248]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-20   71.1  14.6    1.3e-19   70.7  14.5    1.3  1  BPD_transp_1   Binding-protein-dependent transport system inn
  ------ inclusion threshold ------
       0.11   12.3   1.0         16    5.4   0.2    2.5  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7  14.5   1.4e-23   1.3e-19       3     183 ..      55     225 ..      45     227 .. 0.91

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 1.4e-23
  BPD_transp_1   3 llGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifr 99 
                   ++G++++  + +++  l+  +++v+l++P+++l+ +l      l+ lg++  +v+++l+++a+p+ + + + ++r+ + + + aar +G+s  q++r
    KIR63438.1  55 PVGLWLG--HTGRGGGLVVLVSNVTLAIPTLALLTILP-----LTFLGFGRPAVVVALAVFAVPPLLANAYTGVRQTDPEARDAARGMGLSGGQVLR 144
                   4555556..999********************999998.....499*************************************************** PP

  BPD_transp_1 100 kvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   +v lP+a+p++++g++ a++ ++  a+l++f+ + +Glg ++++a  g d++++  g ++a++++v+ l  ++ ++ +l+++ v
    KIR63438.1 145 RVELPLAVPYLAAGFRTAAVQVVATAALASFVNG-GGLG-QIIRAGFGLDIAAGG-GQIIAGGLLVAGLAMLVELVLALVERLV 225
                   *********************************5.57**.99*************.9999999999999999999999888765 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0023        21      22      35 ..      34      47 ..      32      48 .. 0.91
   2 ?    5.4   0.2    0.0018        16      22      38 ..     130     146 ..     127     147 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0023
  HTH_AsnC-type 22 eLAervGlSestvl 35
                   +L+e +G+S+++vl
     KIR63438.1 34 RLGEHLGMSAAAVL 47
                   69**********96 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0018
  HTH_AsnC-type  22 eLAervGlSestvlrRv 38 
                    + A+  GlS  +vlrRv
     KIR63438.1 130 DAARGMGLSGGQVLRRV 146
                    668889**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1703.39
//
Query:       KIR63439.1  [L=303]
Description: adenine glycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-13   51.2   0.0    2.3e-13   50.5   0.0    1.3  1  HhH-GPD        HhH-GPD superfamily base excision DNA repair p
      3e-09   36.3   0.4    1.7e-08   33.9   0.0    2.3  2  HHH            Helix-hairpin-helix motif
    3.3e-05   24.1   5.7    5.9e-05   23.3   5.7    1.5  1  EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
  ------ inclusion threshold ------
       0.19   12.1   0.0       0.45   10.9   0.0    1.6  1  HHH_8          Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   5.1e-17   2.3e-13       1      92 [.      35     154 ..      35     167 .. 0.93

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 5.1e-17
                 HHHHHHTTS-HHHHHHHHHHHHHHHSHCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................. RF
     HhH-GPD   1 vsailsqqtsderanriierlferfgfptpedladadeekLrelirelGfyrrKakyikelArilv................................. 66 
                 vs+++ qqt+++r+ +++e + +r+  ptp +la+ ++++   ++  lG++ r+a +++++A ++v                                 
  KIR63439.1  35 VSEVMLQQTPVVRVLPAYEAWLARW--PTPAALAADPPAEAIRMWGRLGYP-RRAMRLHDCAVAIVerhggevpdrleqllalpgvgtytaravaafay 130
                 799*********************8..9*********************99.*********************************************66 PP

                 S-SSS--TTSHHHHHHHHHHTTSSSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 gkpdvlivvDvhvrrilkrlrsikek 92 
                 g  +  +vvD++vrr+++r  + +++
  KIR63439.1 131 G--QRHPVVDTNVRRVVSRAVAGEPD 154
                 5..567*************9877776 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       0.3   1.3e+03      16      20 ..      25      29 ..      24      30 .. 0.88
   2 !   33.9   0.0   3.7e-12   1.7e-08       1      30 []      99     128 ..      99     128 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.3
                STT-S CS
         HHH 16 lPGVG 20
                +PGVG
  KIR63439.1 25 VPGVG 29
                9***9 PP

  == domain 2  score: 33.9 bits;  conditional E-value: 3.7e-12
                 SHHHHHTSSHHHHHTSTT-SHHHHHHHHHH CS
         HHH   1 sleglipasreeLlalPGVGpktAeaIlsy 30 
                 +++g++p+ +e+LlalPGVG +tA+a++++
  KIR63439.1  99 RHGGEVPDRLEQLLALPGVGTYTARAVAAF 128
                 699************************986 PP

>> EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   5.7   1.3e-08   5.9e-05       1      17 []     193     209 ..     193     209 .. 0.99

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.3e-08
  EndIII_4Fe-2S   1 CTARkPkCeaCPLaDlC 17 
                    CTAR+P+C  CP+  +C
     KIR63439.1 193 CTARSPRCAVCPVESIC 209
                    ****************9 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0001      0.45      31      65 ..      93     127 ..      87     129 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0001
                 HHCCCCC-SS-HHHH.TTHCTTSTT--HHHHHHHHH CS
       HHH_8  31 Aaraiealpeeitsl.eeeltklpgiGkkiaakiee 65 
                 A++ +e+++ e+ +  e+ l +lpg+G  +a+ ++ 
  KIR63439.1  93 AVAIVERHGGEVPDRlEQ-LLALPGVGTYTARAVAA 127
                 8899999***99999788.************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2129.31
//
Query:       KIR63440.1  [L=250]
Description: hypothetical protein TK50_17325 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.081   13.2   0.0       0.15   12.3   0.0    1.4  1  Antimicrobial_7  Scorpion antimicrobial peptide


Domain annotation for each model (and alignments):
>> Antimicrobial_7  Scorpion antimicrobial peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.3e-06      0.15       7      25 ..     171     189 ..     170     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.3e-06
  Antimicrobial_7   7 IKstAkkvwnSepvkqLKn 25 
                      +Ks A kvw+S++  + K+
       KIR63440.1 171 VKSGAEKVWSSDTCGNVKG 189
                      8************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1665.17
//
Query:       KIR63441.1  [L=394]
Description: DNA integrity scanning protein DisA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-49  167.7   0.9    1.9e-49  167.1   0.9    1.3  1  DisA-linker  DisA bacterial checkpoint controller linker regi
      1e-25   89.7   0.0    1.6e-25   89.0   0.0    1.3  1  DisA_N       DisA bacterial checkpoint controller nucleotide-
    2.3e-07   30.8   1.6    5.8e-06   26.3   0.0    3.0  3  HHH_2        Helix-hairpin-helix motif
     0.0007   19.3   0.1     0.0022   17.8   0.1    1.9  1  HHH          Helix-hairpin-helix motif
      0.002   18.7   0.0      0.006   17.2   0.0    1.9  1  HHH_5        Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> DisA-linker  DisA bacterial checkpoint controller linker region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.1   0.9   5.4e-53   1.9e-49       1     140 [.     177     317 ..     177     319 .. 0.97

  Alignments for each domain:
  == domain 1  score: 167.1 bits;  conditional E-value: 5.4e-53
                  .--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EBHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHTTHHHHHHHHHHH CS
  DisA-linker   1 LedievilakanqalqTLekYrsvldevlsnLsalEfedlVtlsdVaeviqrlemvlrikeeiekyiveLGteGrlislqleeLlanveeeeellikD 98 
                  L+d+++il++anqal+TLe+Y+ +ldev  +LsalE+edlVt++d ++v+qrlemv+ri++ei  y+veLGt+Grl++lql+eL+a+v+ +++l+i+D
   KIR63441.1 177 LDDSAAILSRANQALATLERYKLRLDEVSGTLSALEIEDLVTVRDAVAVVQRLEMVRRIADEIAGYVVELGTDGRLLALQLDELMAGVDADRTLVIRD 274
                  6899********************************************************************************************** PP

                  HSSS--.HHHHHHHHHHH...HTTS---HHHHHHHTT---SSG CS
  DisA-linker  99 Ylkeek.eeeaeeileelkelsseelldlskiaklLGyeksse 140
                  Yl+  + +++++e+l el+ l ++el+dl ++ak++Gy+++s+
   KIR63441.1 275 YLPAGRkSRTLDEALVELDLLGATELIDLVAVAKAIGYPAASD 317
                  **9977799*****************************99876 PP

>> DisA_N  DisA bacterial checkpoint controller nucleotide-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.0   4.5e-29   1.6e-25       2     118 ..      60     173 ..      59     174 .. 0.94

  Alignments for each domain:
  == domain 1  score: 89.0 bits;  conditional E-value: 4.5e-29
                 HHHHHHHHHT--EEEEEESSSCCCTTCCTSEEEEEE--HHHHHHHTSTTSTTCSSEEEE.E.TTEEEEEEEEE--TT-TTSST-SHHHHHHHHHHHHSS CS
      DisA_N   2 eaveelskkkiGaliviereeelkeiietgvkldaevskellkeifekksplhDGAvii.r.dgrivaagviLplsenkelkelGtRHraAlgiseetd 98 
                 +++e++ + ++Galiv++ ++ ++ ++++g+ ld e+s++ ++e+      ++DGAv++ + ++riv+a+v+L +  +  ++e GtRHr+A++++++t 
  KIR63441.1  60 DGLERILRGRTGALIVLGYDKVVEGLCTGGFPLDVEFSATRVREL-----CKMDGAVVLsSdGTRIVRAAVHLMPDPSIPTEESGTRHRTAERVARQTG 153
                 68999****************************************.....*********85699***********5544457***************** PP

                 SEEEEE-TTTS-EEEEETTE CS
      DisA_N  99 alvivVSeetgkislakdgk 118
                   vi VS++++ isl+ +g+
  KIR63441.1 154 YPVISVSQSMRIISLYVNGQ 173
                 ******************97 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.069   2.5e+02      32      53 ..     224     245 ..     222     249 .. 0.87
   2 ?   -2.2   0.0       1.3   4.7e+03      17      41 ..     283     307 ..     280     317 .. 0.75
   3 !   26.3   0.0   1.6e-09   5.8e-06      18      53 ..     344     379 ..     340     389 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.069
       HHH_2  32 asleeLlevddiGeeiAqsive 53 
                 a ++ L  v+ i++eiA  +ve
  KIR63441.1 224 AVVQRLEMVRRIADEIAGYVVE 245
                 567899***********99886 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.3
       HHH_2  17 klLakrFksldaLkkasleeLlevd 41 
                 ++L ++  +ld L +++l +L++v 
  KIR63441.1 283 RTLDEALVELDLLGATELIDLVAVA 307
                 6677777789999999999999885 PP

  == domain 3  score: 26.3 bits;  conditional E-value: 1.6e-09
       HHH_2  18 lLakrFksldaLkkasleeLlevddiGeeiAqsive 53 
                  L+ +F+sl++L  a++e+L++v+++G+  A+ ++e
  KIR63441.1 344 RLVLHFGSLQRLLGATVEDLQAVEGVGDARARGVRE 379
                 6899***************************99987 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1     6e-07    0.0022       2      25 ..     352     375 ..     351     379 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 6e-07
                 HHHHHTSSHHHHHTSTT-SHHHHH CS
         HHH   2 leglipasreeLlalPGVGpktAe 25 
                 l++l  a++e+L+a++GVG ++A+
  KIR63441.1 352 LQRLLGATVEDLQAVEGVGDARAR 375
                 6667779*************9997 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.7e-06     0.006       1      55 [.     328     381 ..     328     383 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.7e-06
                 -HHHHTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHH CS
       HHH_5   1 feeLlsvsGiGpktAlallsaGiesvedlaaadveeLakipGiGkktAeriilel 55 
                 f++L +v+ +  +++ +l+ + ++s++ l+ a+ve+L+++ G+G  +A+ + + l
  KIR63441.1 328 FRLLAKVPRLPVAIVDRLVLH-FGSLQRLLGATVEDLQAVEGVGDARARGVREGL 381
                 899999999999999******.*************************98777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2725.93
//
Query:       KIR63442.1  [L=255]
Description: hypothetical protein TK50_17340 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-05   24.3   0.0    0.00011   22.0   0.0    1.9  2  PCuAC     Copper chaperone PCu(A)C
  ------ inclusion threshold ------
       0.48   10.3   1.5       0.45   10.4   1.5    1.1  1  SPX       SPX domain


Domain annotation for each model (and alignments):
>> PCuAC  Copper chaperone PCu(A)C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.11   9.6e+02      15      43 ..      76     103 ..      62     109 .. 0.66
   2 !   22.0   0.0   1.2e-08   0.00011      62     107 ..     170     216 ..     165     218 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.11
                 EEEEEEEEEECSSSEEEEEEEE-TTCCEE CS
       PCuAC  15 vsaaymtirNtgdeddkLvaassdvaasv 43 
                 ++a+  ++ N+++++++++ +++d a+++
  KIR63442.1  76 NAAVNAVLYNDTQSPVTVT-VTTDSAREI 103
                 5566666777776666643.555555544 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 1.2e-08
                 SEEEETTEEEEE-.TTSCEEEEECESS-B-TTEEEEEEEEETTTEEE CS
       PCuAC  62 gieipaggqveLk.pggfhvMliglkrdlkaGdevtltLtfekggti 107
                 ++eipa g v+L+ +gg  + l+gl+++l aG++v+lt+ f +g+t+
  KIR63442.1 170 RFEIPALGYVQLNvQGGRSLQLVGLNQALLAGQQVNLTFDFGNGNTV 216
                 69**********84689***************************998 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.5     5e-05      0.45      92     143 ..      97     162 ..      31     239 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5e-05
         SPX  92 e..............slprrsplsrssrssssygglvssppsansssssddssesnpadsssssss 143
                 +              s++++ + s+s ++s s +g+ s++ sa++s+s ++s+++++++s+s+s+s
  KIR63442.1  97 TdsareivisggasaSPSPSASASESPSESASPSGSASPSGSASPSGSASPSEGASEGPSASPSPS 162
                 033333333333433333333333333333333333333333333333333333332222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 1778.44
//
Query:       KIR63443.1  [L=349]
Description: chalcone synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-20   74.3   0.0    1.7e-20   73.5   0.0    1.3  1  Chal_sti_synt_C  Chalcone and stilbene synthases, C-terminal 
    3.7e-16   59.2   0.1    5.4e-16   58.7   0.1    1.3  1  Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal 
    1.8e-11   44.1   0.0    5.5e-11   42.5   0.0    1.9  2  ACP_syn_III_C    3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    3.9e-07   29.7   0.0    5.9e-07   29.1   0.0    1.2  1  FAE1_CUT1_RppA   FAE1/Type III polyketide synthase-like prote
     0.0052   16.6   0.3      0.015   15.2   0.2    1.8  2  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
  ------ inclusion threshold ------
      0.012   14.4   0.1      0.021   13.5   0.0    1.4  2  T7SS_ESX1_EccB   Type VII secretion system ESX-1, transport T


Domain annotation for each model (and alignments):
>> Chal_sti_synt_C  Chalcone and stilbene synthases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.0   5.7e-24   1.7e-20      13     147 ..     220     345 ..     211     349 .] 0.89

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 5.7e-24
  Chal_sti_synt_C  13 tdgvidgklteeGltfkllrdlPekieenieeflkklleklGieefndlfwivhPGGpaildrleaklklekekleasrkvlseyGnvssatvl 106
                      t+ ++   +t++G+ + l   +P+ ++ ++  ++  ll++ G +  +   w+vhPGGp ild +e +l l ++ l a+r  l  +Gn ssatv+
       KIR63443.1 220 TADHMTWDVTDTGFRMGLSPKVPQVLSRHVRGLVDGLLARHGATLSEVGGWAVHPGGPRILDVVERELALPPQALDAARATLDAHGNCSSATVM 313
                      566788899*********************************99777778******************************************** PP

  Chal_sti_synt_C 107 yvldelrdkelkkklattgegkewGlllafGPGltietlll 147
                       +ld+l    +++         e  l+lafGPGlt+ + ll
       KIR63443.1 314 LILDRLLR--AQRP-------AERILMLAFGPGLTLYAALL 345
                      ****9877..3333.......34569*********988777 PP

>> Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.1   1.8e-19   5.4e-16      87     221 ..      66     200 ..       5     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 1.8e-19
  Chal_sti_synt_N  87 sldarleivnaevlklgkeaalkalkewGrPkskithlvfvsssevelPGadlklakklGlrpsvkrvmlyflGcygGatvlrlakdiaennkG 180
                        + r+   ++e l lgkea  +al   G  + ++  ++ +s ++   PG d+ la+ lG+ p+++r+++ ++Gcy+   +l  a d     + 
       KIR63443.1  66 PTERRMRRYQVEALPLGKEAVGRALTAAGLDAGDVGMFIVCSCTGYATPGLDILLARDLGMAPHTQRMVVGHMGCYAALPGLGAAGDFVTARQ- 158
                      45677778889999*************************************************************************997765. PP

  Chal_sti_synt_N 181 arvlvvaseitvlgfrgPskd.rlddlvGaalfGdGaaavii 221
                         l+ ++e+t l  ++ +     +++v +alf d a a+++
       KIR63443.1 159 RPALLLCAELTSLHIQPATARlDTQQIVSHALFSDAAVAAVV 200
                      457889*******99865433145689**********99887 PP

>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.3   3.8e+03       2      17 ..      91     106 ..      90     143 .. 0.65
   2 !   42.5   0.0   1.9e-14   5.5e-11       1      88 [.     257     345 ..     257     347 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.3
                    HHTT--GGG-SEEEE- CS
  ACP_syn_III_C   2 ekagltpedidalvph 17 
                     +agl++ d+ +++  
     KIR63443.1  91 TAAGLDAGDVGMFIVC 106
                    5677788888777754 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 1.9e-14
                    HHHTT--GGG-SEEEE-SSSHHHHHHHHHHHT--GG...GB--THHHH-B-GGGHHHHHHHHHHHTTSS-TT-EEEEEEEETTTEEEEEEE CS
  ACP_syn_III_C   1 Lekagltpedidalvphqanlriidavakklglpee...kvvvnldeyGntsaasiplaLdeaveegklkpgdlvllvgfGaGltwgaall 88 
                    L+++g t +++     h    ri+d v ++l lp++    +  +ld +Gn+s+a+++l Ld++++ +  +p +++l+++fG Glt  aall
     KIR63443.1 257 LARHGATLSEVGGWAVHPGGPRILDVVERELALPPQaldAARATLDAHGNCSSATVMLILDRLLRAQ--RPAERILMLAFGPGLTLYAALL 345
                    78999999**************************99887788899********************55..9******************998 PP

>> FAE1_CUT1_RppA  FAE1/Type III polyketide synthase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0     2e-10   5.9e-07      39     200 ..      30     197 ..      25     209 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 2e-10
  FAE1_CUT1_RppA  39 kldeesldflrkilersglgee..tyvP..ravlelpekktlaeareEaeevlfgavdellaktkvspkdidilvvncslfsptPslsamvvnry 129
                     ++ + + +++++i+++sg++ +  ++ P  + v + p+++++++ + Ea  +  +av   l  +++++ d+++++v + +  +tP l  ++ +  
      KIR63443.1  30 HFPDATRALAQRIFANSGVTRRqaAVNPllEDVSDWPTERRMRRYQVEALPLGKEAVGRALTAAGLDAGDVGMFIVCSCTGYATPGLDILLARDL 124
                     56677788999********965114445445677888999999*********************************999999************* PP

  FAE1_CUT1_RppA 130 klredvksynLsgmGCsAglisidlaknllqvhkntlalvvstEnitlnwYvGner...smllanclFRvGgaa 200
                     ++    + + ++ mGC A+l  +  a +++ + ++  al++  E ++l++   + r   + +++ +lF   ++a
      KIR63443.1 125 GMAPHTQRMVVGHMGCYAALPGLGAAGDFVTA-RQRPALLLCAELTSLHIQPATARldtQQIVSHALFSDAAVA 197
                     ****************************9866.56789999999999998777665333577888888666555 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   4.9e-06     0.015       6      71 ..     139     209 ..     136     218 .. 0.77
   2 ?   -2.5   0.0       1.6   4.9e+03       2      18 ..     302     318 ..     301     332 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.9e-06
                  GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGCS-TT....THHHHT...TB-EEEEEEEEEEESSSSCEE CS
  ACP_syn_III   6 aCsgfvyalsvAdaliesgaakrvLvigaetlskilDwk....drstav...lfGDGAgAvvleaseeegari 71 
                  +C +++ +l  A +++ +   + +L+ +ae +s ++ ++    d +++v   lf+D+A A+v+ +++ +g  +
   KIR63443.1 139 GCYAALPGLGAAGDFVTAR-QRPALLLCAELTSLHIQPAtarlDTQQIVshaLFSDAAVAAVVVPGG-RGYAL 209
                  7999999999999999986.8999*********9999975555555555566**********99873.44445 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.6
                  EEE-GGGHHHHHHHHHH CS
  ACP_syn_III   2 DlnaaCsgfvyalsvAd 18 
                  D   +Cs++++ l + +
   KIR63443.1 302 DAHGNCSSATVMLILDR 318
                  77788999988776544 PP

>> T7SS_ESX1_EccB  Type VII secretion system ESX-1, transport TM domain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.1e-06     0.021     385     430 ..     193     239 ..     164     268 .. 0.80
   2 ?   -3.2   0.0      0.81   2.4e+03     446     469 ..     324     347 ..     309     348 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.1e-06
                     ......EEESSBE..EEEEEECSTT..CEEEE.EEEETTSEEEEE-S CS
  T7SS_ESX1_EccB 385 gatvdavylppgtgalvqatgaepaseargsl.fyvsdtGvRYgipd 430
                      a+v av++p+g+g+ ++ ++a +++++++ + + v+dtG R g+  
      KIR63443.1 193 DAAVAAVVVPGGRGYALREVTAITDTSTADHMtWDVTDTGFRMGLSP 239
                     56899*****************9999999999466*******99875 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.81
                     --HHHHTTSEEEEEE-CCCCT-EE CS
  T7SS_ESX1_EccB 446 aPwsilkllpaGPtLsradAlvah 469
                      P++ + +l+ GP L+  +Al+ h
      KIR63443.1 324 RPAERILMLAFGPGLTLYAALLDH 347
                     578888899*******99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2748.23
//
Query:       KIR63444.1  [L=69]
Description: hypothetical protein TK50_17420 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-21   75.3   0.8    3.2e-21   75.1   0.8    1.1  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.8   1.8e-25   3.2e-21       1      54 []       7      63 ..       7      63 .. 0.87

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 1.8e-25
      DUF397  1 atWrKSsySgggggnCVEvaalpda.........vavRDSkdpdgpvLtftpaewaaFlagvk 54
                a+Wr Ss+S+++g  CVEv     a         vavRDSkdp+gp+Lt++p  w+aF+++++
  KIR63444.1  7 AVWRTSSRSNDQGL-CVEV-----AdnlvssagvVAVRDSKDPAGPALTVSPPGWTAFVDAIR 63
                58********9996.****.....33334455989*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 559.55
//
Query:       KIR63445.1  [L=474]
Description: hypothetical protein TK50_17460 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-12   45.3  11.4    1.7e-08   34.4   2.1    2.5  2  PQQ_2     PQQ-like domain
    5.8e-06   26.0   3.6        3.3    7.8   0.0    6.0  6  PQQ       PQQ enzyme repeat


Domain annotation for each model (and alignments):
>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   3.1   1.4e-06     0.013     100     183 ..      44     112 ..      37     164 .. 0.61
   2 !   34.4   2.1   1.9e-12   1.7e-08      44     233 ..     209     394 ..     146     396 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.4e-06
       PQQ_2 100 WstqqrseepaelrssaspavagdtvvvgessgklvaldpkdGkvlWerelaaprgtselsrvgdisgrpvvaegtVyassgqg 183
                 W+ q+ +      ++++s ++agdtv+v + + ++ a+++++G +lW+r+   +        v   +  pvva g++++ +++ 
  KIR63445.1  44 WQ-QRVG------GTPKSVTIAGDTVIVEQ-RTRVEARSLATGAQLWDRKADWAA-------VAGGDRDPVVAVGKLLVKGYEV 112
                 66.3333......67888999999999999.999999999999999999874333.......3334566666666666666544 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 1.9e-12
       PQQ_2  44 gggrlvaldaatGkvlWettlegpvvgaplvaegrvvvva...sdg....qlialdaedGkrlWstqqrseepae..lrssaspavagdtvvvges.sg 132
                   gr++ +d+atG+vl ++++     ++  v +gr++  +    dg    +l+a d ++Gk++W++   +  +a+   ++++++  +  +v++g + +g
  KIR63445.1 209 VDGRVHVVDTATGRVLQNVEPGRD--ERLAVVGGRMLRISavgRDGacafTLTAHDPTTGKQVWRRTGINLRTADsaGCVQREDPQGARNVLIGVApDG 305
                 6799****************8777..667888999854444447778999***************55545466666667777777776666666555** PP

       PQQ_2 133 klvaldpkdGkvlWerelaaprgtselsrvgdisgrpvvaeg..tVyassgqgrllaldlatgrrlwskeissinglpildgdllyvvsa.gelialdr 228
                 + +++d  dG++                +v+d  ++++ +++  ++++ + + +++a +l+  r++w+++ ++ ng  + +   + ++++ ++liald+
  KIR63445.1 306 REAVIDGYDGRL---L------------QVNDEGQKLIAVDDryALLRTADKRSIVARELGADRTRWTRPTGEKNGATLTPYAAVLTQEKpNRLIALDP 389
                 ************...2............23444455665555669999999999**********************677777777766679******** PP

       PQQ_2 229 atGav 233
                  tG++
  KIR63445.1 390 RTGKE 394
                 ***96 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.032   2.9e+02      21      35 ..      41      55 ..      41      58 .. 0.84
   2 ?    2.9   0.1     0.013   1.2e+02      16      34 ..      74      92 ..      60      95 .. 0.80
   3 !    7.8   0.0   0.00037       3.3       5      23 ..     205     224 ..     204     229 .. 0.91
   4 ?    2.1   0.0     0.024   2.1e+02      18      25 ..     264     271 ..     257     273 .. 0.79
   5 ?   -1.6   0.0      0.34     3e+03       2      22 ..     296     317 ..     295     319 .. 0.77
   6 !    6.1   0.0    0.0012        11       7      23 ..     379     395 ..     374     408 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.032
                CEEEEEESSSCGSSE CS
         PQQ 21 kvlWrfktggpvlsl 35
                +v+W+ ++gg + s 
  KIR63445.1 41 DVIWQQRVGGTPKSV 55
                589*******99885 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.013
                ETTTCCEEEEEESSSCGSS CS
         PQQ 16 DadTGkvlWrfktggpvls 34
                 ++TG  lW  k++++ ++
  KIR63445.1 74 SLATGAQLWDRKADWAAVA 92
                579*********9998765 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00037
                 EE.ETTSEEEEEETTTCCEE CS
         PQQ   5 lg.sadGylyAlDadTGkvl 23 
                 lg + dG++  +D +TG+vl
  KIR63445.1 205 LGfPVDGRVHVVDTATGRVL 224
                 57789************986 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.024
                 TTCCEEEE CS
         PQQ  18 dTGkvlWr 25 
                 +TGk +Wr
  KIR63445.1 264 TTGKQVWR 271
                 8******8 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 0.34
                 EEEEE.ETTSEEEEEETTTCCE CS
         PQQ   2 vvylg.sadGylyAlDadTGkv 22 
                 +v +g  +dG+   +D ++G++
  KIR63445.1 296 NVLIGvAPDGREAVIDGYDGRL 317
                 6777778888888889999876 PP

  == domain 6  score: 6.1 bits;  conditional E-value: 0.0012
                 ETTSEEEEEETTTCCEE CS
         PQQ   7 sadGylyAlDadTGkvl 23 
                  ++++l AlD +TGk+l
  KIR63445.1 379 EKPNRLIALDPRTGKEL 395
                 5689***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3343.49
//
Query:       KIR63446.1  [L=1533]
Description: hypothetical protein TK50_17480 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-28   99.0   6.4    2.8e-28   99.0   6.4    4.5  4  Laminin_G_3      Concanavalin A-like lectin/glucanases superf
    8.7e-28   96.4  64.0    2.7e-10   40.4   3.2    8.0  9  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
    4.9e-25   87.4  11.0    8.7e-07   28.9   0.3    5.1  4  CarbopepD_reg_2  CarboxypepD_reg-like domain
    8.1e-09   35.7  16.9     0.0036   17.5   0.1    5.2  5  SdrD_B           SdrD B-like domain
    3.6e-05   23.9   0.0       0.67   10.1   0.0    3.9  4  DUF2012          Protein of unknown function (DUF2012)
  ------ inclusion threshold ------
      0.032   14.6  20.5       0.28   11.5   0.5    6.1  4  SpaA             Prealbumin-like fold domain
      0.075   12.5   1.1         11    5.4   0.1    3.3  3  Dioxygenase_C    Dioxygenase
       0.11   12.6   0.2         18    5.4   0.0    3.5  3  CooC_C           CS1-pili formation C-terminal
       0.16   11.9   1.7       0.97    9.4   0.1    2.8  2  phage_tail_N     Prophage tail fibre N-terminal
       0.26   11.1   5.4       0.27   11.0   0.4    3.3  3  Phage_Mu_Gp45    Bacteriophage Mu Gp45 protein


Domain annotation for each model (and alignments):
>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   6.4   1.5e-31   2.8e-28      12     149 ..     170     317 ..     159     320 .. 0.79
   2 ?    0.3   1.7      0.38   6.9e+02      85     139 ..     344     404 ..     333     417 .. 0.76
   3 ?    0.4   0.8      0.36   6.4e+02      57     117 ..    1276    1340 ..    1263    1352 .. 0.70
   4 ?   -2.9   0.0       3.8   6.9e+03      35      75 ..    1471    1509 ..    1464    1513 .. 0.64

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 1.5e-31
  Laminin_G_3  12 aslptssfTvsaWvkpdslpsaaqi.iissssdg...rgfelgldgsg.rlrfsvnagngaee...svtsgasvpageWtHvavtydggt..lrlYvN 99 
                  +  + +sfTv+aWvk++s +++  + +i  s +g   + ++lg++gs+ r+rf+++a+++++    ++ s+a+ +ag+WtH+a++ydg+t  l+lYvN
   KIR63446.1 170 PARTDTSFTVTAWVKVNSISGTGLQtVI--SANGsrmSAYHLGYAGSNqRWRFTMAAADTDNAglyTAFSDAAPTAGKWTHLAGVYDGSTkkLTLYVN 265
                  334688************8877544266..43334699******87777****8887766555444777******************87778****** PP

  Laminin_G_3 100 Gvevgsa.tltggllsatsgplviGrdpgg...ddpfdGlidevriynralsaa 149
                  Gv+++++ tltgg++  +++ ++iGr++++   d +++G++d+vr+yn + ++a
   KIR63446.1 266 GVAQATTaTLTGGFN--ATAEVAIGRRMWNggaDGYLTGAVDDVRFYNFVETPA 317
                  **9999945555544..7889*******65568***************887776 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.38
  Laminin_G_3  85 vavtyd...ggt....lrlYvNGvevgsatltggllsatsgplviGrdpggddpfdGlidev 139
                  +avt+d   + t    ++  v+G+  +s+++++++  +++ ++ +G+ +g+   ++ ++d  
   KIR63446.1 344 LAVTFDaggD-TnvtaFNYSVDGTGLSSTVNATAPGGTATVTINVGATTGTRVVYAVAVDGS 404
                  7999997642.246679999999999999999988877777778888877666666666655 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.36
  Laminin_G_3   57 lrfsvnagngaeesvtsgasvpageWtHvavtyd....ggtlrlYvNGvevgsatltggllsats 117 
                   ++++++++++a +     ++vpag+W  +a + +    g+ +r  v G+  + +++ +++ ++t+
   KIR63446.1 1276 VAVASATATTAADGTYQVTAVPAGSWAAIATVPSgtckGSDVRQVVVGTSTQATADFARAATPTG 1340
                   55666667777777778999**********99996665445666666666666655555444444 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 3.8
  Laminin_G_3   35 qiiissssdgrgfelgl.dgsgrlrfsvnagngaeesvtsga 75  
                   q+i+  + +g g+++ + d++g++  + +a++ + e++++++
   KIR63446.1 1471 QAIL--DEAG-GYSFAYtDNDGTFLERGGAATVGIENADGTS 1509
                   4555..6678.9999994455555556666666666666655 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2         4   7.2e+03      31      38 ..      97     104 ..      60     124 .. 0.50
   2 ?   -2.8   0.3       4.6   8.2e+03      29      71 ..     222     264 ..     195     276 .. 0.55
   3 ?   -2.4   1.3       3.4     6e+03      52      79 ..     372     385 ..     330     401 .. 0.49
   4 !   37.8   0.2   9.5e-13   1.7e-09       1      59 [.     421     475 ..     421     493 .. 0.92
   5 !   40.4   3.2   1.5e-13   2.7e-10       2      72 ..     702     769 ..     701     777 .. 0.86
   6 !   34.0   3.3   1.4e-11   2.6e-08       1      79 [.     974    1051 ..     974    1054 .. 0.78
   7 !   19.9   8.3   3.6e-07   0.00064       1      79 [.    1259    1332 ..    1258    1333 .. 0.77
   8 ?    0.5   2.1      0.41   7.4e+02      27      72 ..    1319    1365 ..    1311    1373 .. 0.82
   9 ?   -1.9   0.0       2.3   4.2e+03      26      40 ..    1477    1491 ..    1462    1495 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4
  CarboxypepD_reg  31 stttdadG 38 
                      ++ +++ G
       KIR63446.1  97 RAGSGPAG 104
                      22233333 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.6
  CarboxypepD_reg  29 vastttdadGafr.lrglppgtysvtvsapGyatatreevtlta 71 
                       a + td+ G ++ +++ +p+  + t  a  y+ +t+  +tl +
       KIR63446.1 222 MAAADTDNAGLYTaFSDAAPTAGKWTHLAGVYDGSTK-KLTLYV 264
                      4667788888887233333355555555555555554.355555 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.4
  CarboxypepD_reg  52 vtvsapGyatatreevtltagqtttldi 79 
                      v ++ap              g+t+t++i
       KIR63446.1 372 VNATAP--------------GGTATVTI 385
                      222222..............33333333 PP

  == domain 4  score: 37.8 bits;  conditional E-value: 9.5e-13
  CarboxypepD_reg   1 tisGrVtdasgapiagatVtvtnadtgtvastttdadGafrlrglppgtysvtvsapGy 59 
                      +isG+V d++  p aga V ++       +++t++adG++ l++lp gty++t+++ G 
       KIR63446.1 421 SISGTVWDPNYLPQAGAVVQLQ----PGGYQATSGADGSYLLENLPVGTYTLTATFGGR 475
                      69********************....899**************************9986 PP

  == domain 5  score: 40.4 bits;  conditional E-value: 1.5e-13
  CarboxypepD_reg   2 isGrVtdasgapiagatVtvtnadtgtvastttdadGafrlrglppgtysvtvsapGyatatre.evtltag 72 
                      +sG  tda g+p+ gatV++      t  sttt+a Ga++++gl +++y+v +  +G   ++++ +v+l+a+
       KIR63446.1 702 LSGVLTDAAGTPVVGATVSLD----PTGVSTTTGAGGAYAFTGLVADSYTVSAKLAGRCGVAVRaQVELSAD 769
                      89*******************....9***************************9999888776426666655 PP

  == domain 6  score: 34.0 bits;  conditional E-value: 1.4e-11
  CarboxypepD_reg    1 tisGrVtda.sgapiagatVtvtnadtgtvastttdadGafrlrglppgtysvtv.....sapGyatatreevtltagqtttldi 79  
                       t++G  t a +g+p+agatV++       ++s+ t+adG+++++ +p g+y v +     + +    +  +e + ++g+t+++d+
       KIR63446.1  974 TVKGVLTTAvTGQPLAGATVSLN----PGNRSAITAADGSYQFTTVPVGEYAVAAatgdsRCA---GQYAKETVNHPGGTSDVDL 1051
                       799*****99*************....9**************************955333222...2222333446677777765 PP

  == domain 7  score: 19.9 bits;  conditional E-value: 3.6e-07
  CarboxypepD_reg    1 tisGrVtdasgapiagatVtvtnadtgtvastttdadGafrlrglppgtysvtvsapGya..tatreevtltagqtttldi 79  
                       +++G++t  +g+p+aga+V+v+      +a++tt+adG+++++++p+g+    ++ p      + +++v++   +++t d+
       KIR63446.1 1259 SVTGTITC-QGTPVAGASVAVA------SATATTAADGTYQVTAVPAGSWAAIATVPSGTckGSDVRQVVVGTSTQATADF 1332
                       46677764.79***********......8*******************999888766554224444567777666666666 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 0.41
  CarboxypepD_reg   27 gtvastttdadGafrlrglpp.gtysvtvsapGyatatreevtltag 72  
                       ++v +t t a+ +f+ ++ p+ g y++  +a  y +a+ + + +t +
       KIR63446.1 1319 QVVVGTSTQATADFARAATPTgGGYTLAEQAVAYVPANTTVLPVTGD 1365
                       5788999999*****9999999**********999999887777744 PP

  == domain 9  score: -1.9 bits;  conditional E-value: 2.3
  CarboxypepD_reg   26 tgtvastttdadGaf 40  
                        g  + + td+dG+f
       KIR63446.1 1477 AGGYSFAYTDNDGTF 1491
                       445556778888877 PP

>> CarbopepD_reg_2  CarboxypepD_reg-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   9.7e-09   1.7e-05       1      54 [.     422     474 ..     422     484 .. 0.93
   2 !   23.7   0.1     2e-08   3.6e-05       1      54 [.     702     754 ..     702     776 .. 0.88
   3 !   28.9   0.3   4.9e-10   8.7e-07       1      48 [.     975    1022 ..     975    1026 .. 0.95
   4 !   13.6   0.3   2.9e-05     0.051       1      45 [.    1260    1300 ..    1260    1306 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 9.7e-09
  CarbopepD_reg_2   1 isGtVvdketkeplpgatVyvkgtkkgtvTdenGnFelknlpagkytLvvsyvG 54 
                      isGtV d +   p +ga V+++  + ++++ ++G++ l+nlp g+ytL++++ G
       KIR63446.1 422 ISGTVWDPNY-LPQAGAVVQLQPGGYQATSGADGSYLLENLPVGTYTLTATFGG 474
                      89****9865.79999*********************************99866 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 2e-08
  CarbopepD_reg_2   1 isGtVvdketkeplpgatVyvkgtkkgtvTdenGnFelknlpagkytLvvsyvG 54 
                      +sG  +d+  ++p+ gatV++  t++ t+T + G + ++ l a+ yt+ ++  G
       KIR63446.1 702 LSGVLTDAA-GTPVVGATVSLDPTGVSTTTGAGGAYAFTGLVADSYTVSAKLAG 754
                      589888876.69***********************************9998877 PP

  == domain 3  score: 28.9 bits;  conditional E-value: 4.9e-10
  CarbopepD_reg_2    1 isGtVvdketkeplpgatVyvkgtkkgtvTdenGnFelknlpagkytL 48  
                       ++G  +++ t++pl+gatV+++  ++ ++T ++G+++++++p g+y +
       KIR63446.1  975 VKGVLTTAVTGQPLAGATVSLNPGNRSAITAADGSYQFTTVPVGEYAV 1022
                       6899******************************************87 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 2.9e-05
  CarbopepD_reg_2    1 isGtVvdketkeplpgatVyvkgtkkgtvTdenGnFelknlpagk 45  
                       ++Gt++ ++t  p++ga+V v + +  ++T ++G+++++++pag 
       KIR63446.1 1260 VTGTITCQGT--PVAGASVAVASAT--ATTAADGTYQVTAVPAGS 1300
                       6899999865..*********8766..567788*********985 PP

>> SdrD_B  SdrD B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       5.2   9.4e+03      58     102 ..     342     388 ..     338     394 .. 0.60
   2 ?    2.9   0.0     0.069   1.2e+02      42      65 ..     448     471 ..     429     479 .. 0.83
   3 !   17.5   0.1     2e-06    0.0036      17      66 ..     707     752 ..     698     767 .. 0.80
   4 !   16.4   0.2   4.4e-06    0.0079      23      79 ..     987    1040 ..     979    1058 .. 0.72
   5 !    7.5   0.4    0.0026       4.7      39      70 ..    1279    1311 ..    1260    1349 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.2
      SdrD_B  58 GeYkVeftapagytvtakkaGsddal.dSdadpat.gltktvtlasg 102
                 G+  V+f a  +++vta + ++d +   S ++ +  g t+tvt++ g
  KIR63446.1 342 GTLAVTFDAGGDTNVTAFNYSVDGTGlSSTVNATApGGTATVTINVG 388
                 56678888877777777777777654144444322135666666555 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.069
      SdrD_B  42 ttTdasGkYkFtnltpGeYkVeft 65 
                  t+ a+G+Y  +nl  G+Y+++ t
  KIR63446.1 448 ATSGADGSYLLENLPVGTYTLTAT 471
                 678899*************98765 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 2e-06
      SdrD_B  17 qdagekgisgvtVtLkdakgevvatttTdasGkYkFtnltpGeYkVefta 66 
                  da  + + g tV+L    + +  +ttT a G+Y+Ft+l + +Y+V+ + 
  KIR63446.1 707 TDAAGTPVVGATVSL----DPTGVSTTTGAGGAYAFTGLVADSYTVSAKL 752
                 4888899********....33334799*******************8754 PP

  == domain 4  score: 16.4 bits;  conditional E-value: 4.4e-06
      SdrD_B   23 gisgvtVtLkdakgevvatttTdasGkYkFtnltpGeYkVefta.pagytvtakkaGs 79  
                    +g tV+L+  +     + +T a+G+Y+Ft +  GeY V+ ++  +  + +++k+++
  KIR63446.1  987 PLAGATVSLNPGNR----SAITAADGSYQFTTVPVGEYAVAAATgDSRCAGQYAKETV 1040
                  56788888844444....457********************98844444555555544 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.0026
      SdrD_B   39 v.atttTdasGkYkFtnltpGeYkVeftapagy 70  
                  + at tT a+G+Y+ t + +G++    t p+g+
  KIR63446.1 1279 AsATATTAADGTYQVTAVPAGSWAAIATVPSGT 1311
                  33799*****************99999889887 PP

>> DUF2012  Protein of unknown function (DUF2012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0025       4.5      22      46 ..     446     470 ..     428     474 .. 0.80
   2 ?   -3.8   0.0       7.6   1.4e+04      23      47 ..     727     751 ..     716     755 .. 0.78
   3 !   10.1   0.0   0.00037      0.67       8      46 ..     989    1024 ..     984    1029 .. 0.88
   4 ?    0.7   0.0      0.29   5.3e+02      22      42 ..    1281    1301 ..    1266    1309 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0025
     DUF2012  22 fkalvrrDGsFifrdlpegsYlLev 46 
                 ++a   +DGs+++++lp g+Y+L +
  KIR63446.1 446 YQATSGADGSYLLENLPVGTYTLTA 470
                 3677889***************976 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 7.6
     DUF2012  23 kalvrrDGsFifrdlpegsYlLeve 47 
                 ++ + + G ++f+ l + sY++ ++
  KIR63446.1 727 STTTGAGGAYAFTGLVADSYTVSAK 751
                 57777889999*********99875 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00037
     DUF2012    8 antrvlLdsgqqrkfkalvrrDGsFifrdlpegsYlLev 46  
                  a+++v+L+ g +   +a +++DGs+ f+ +p g+Y + +
  KIR63446.1  989 AGATVSLNPGNR---SAITAADGSYQFTTVPVGEYAVAA 1024
                  778999999988...********************9865 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.29
     DUF2012   22 fkalvrrDGsFifrdlpegsY 42  
                   +a +++DG++ ++ +p+gs+
  KIR63446.1 1281 ATATTAADGTYQVTAVPAGSW 1301
                  568899*************97 PP

>> SpaA  Prealbumin-like fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   0.00016      0.28      35      59 ..     439     469 ..     346     471 .. 0.75
   2 ?    2.1   0.2      0.14   2.5e+02      36      58 ..     726     748 ..     639     749 .. 0.81
   3 ?    5.3   0.5     0.013        24       3      58 ..     985    1022 ..     935    1023 .. 0.78
   4 ?    4.3   2.3     0.029        52      33      57 ..    1278    1302 ..    1189    1363 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
                 E......SEEE-BTTSEEEEEEEESEEEEEE CS
        SpaA  35 v......ttlttdenGkatfegLplGtYllv 59 
                 v      +++t++++G    e+Lp+GtY+l+
  KIR63446.1 439 VqlqpggYQATSGADGSYLLENLPVGTYTLT 469
                 1555555889*******************97 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.14
                 SEEE-BTTSEEEEEEEESEEEEE CS
        SpaA  36 ttlttdenGkatfegLplGtYll 58 
                  + tt++ G   f+gL + +Y++
  KIR63446.1 726 VSTTTGAGGAYAFTGLVADSYTV 748
                 45679999*************98 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.013
                  CCB-TS-EEEEEETTTSCCCHCHHTT.TTCCEESEEE-BTTSEEEEEEEESEEEEE CS
        SpaA    3 gkpLaGaeFtlykvdtttdgkdaleakktgtevttlttdenGkatfegLplGtYll 58  
                  g+pLaGa+ +l   +                   ++ t ++G  +f+ +p+G+Y +
  KIR63446.1  985 GQPLAGATVSLNPGN------------------RSAITAADGSYQFTTVPVGEYAV 1022
                  444444444444444..................8899*****************87 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.029
                  CEESEEE-BTTSEEEEEEEESEEEE CS
        SpaA   33 tevttlttdenGkatfegLplGtYl 57  
                    ++t+tt ++G+ +++++p+G++ 
  KIR63446.1 1278 VASATATTAADGTYQVTAVPAGSWA 1302
                  2347888888888888888887654 PP

>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.022        39      31      51 ..     701     721 ..     686     727 .. 0.90
   2 ?    5.4   0.1     0.006        11      75     100 ..     999    1024 ..     986    1042 .. 0.84
   3 ?   -2.3   0.0       1.4   2.5e+03      34      56 ..    1262    1283 ..    1259    1302 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.022
                    EEEEEEE-TTSSB-TT-EEEE CS
  Dioxygenase_C  31 vlsGrvldeaGkplagalvel 51 
                     lsG ++d+aG p++ga+v l
     KIR63446.1 701 NLSGVLTDAAGTPVVGATVSL 721
                    589***************976 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.006
                     EEEEE--TTSEEEEEEE----EE--T CS
  Dioxygenase_C   75 rgriltdeeGryrirtikPapYpipn 100 
                     +++ +t ++G+y+++t+  + Y +  
     KIR63446.1  999 NRSAITAADGSYQFTTVPVGEYAVAA 1024
                     3899**************99999876 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.4
                     EEEE-TTSSB-TT-EEEEE---T CS
  Dioxygenase_C   34 GrvldeaGkplagalvelWhana 56  
                     G+++  +G p+aga v +  a a
     KIR63446.1 1262 GTIT-CQGTPVAGASVAVASATA 1283
                     5554.468888888887766543 PP

>> CooC_C  CS1-pili formation C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.44   7.9e+02      16      54 ..     699     739 ..     697     774 .. 0.72
   2 ?    1.6   0.0      0.16   2.9e+02      18      55 ..     974    1014 ..     968    1038 .. 0.73
   3 ?    5.4   0.0      0.01        18      26      54 ..    1266    1294 ..    1259    1303 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.44
      CooC_C  16 tvtviGrlvdedgqplanaki.lnhagvavte.edGvFtle 54 
                 t +  G l d +g+p+ +a++ l  +gv+ t  + G ++++
  KIR63446.1 699 THNLSGVLTDAAGTPVVGATVsLDPTGVSTTTgAGGAYAFT 739
                 66789***********9999833445565555466766665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.16
      CooC_C   18 tviGrlv.dedgqplanaki.lnhagv.avteedGvFtlev 55  
                  tv G l  + +gqpla+a++ ln + + a+t +dG +++++
  KIR63446.1  974 TVKGVLTtAVTGQPLAGATVsLNPGNRsAITAADGSYQFTT 1014
                  67777752569******99844655551556699*999864 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.01
      CooC_C   26 edgqplanakilnhagvavteedGvFtle 54  
                   +g+p+a+a+++  +++a t +dG ++++
  KIR63446.1 1266 CQGTPVAGASVAVASATATTAADGTYQVT 1294
                  59************************987 PP

>> phage_tail_N  Prophage tail fibre N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00054      0.97       5      32 ..     702     729 ..     699     758 .. 0.90
   2 ?   -0.0   0.2      0.44   7.9e+02       5      57 ..     975    1028 ..     973    1044 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00054
  phage_tail_N   5 isGvlkdGtGkPvqnctiqlkarrtstt 32 
                   +sGvl+d +G+Pv + t+ l     stt
    KIR63446.1 702 LSGVLTDAAGTPVVGATVSLDPTGVSTT 729
                   7******************987776665 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.44
  phage_tail_N    5 isGvlkdG.tGkPvqnctiqlkarrtsttvvvntvasenpdeaGrysldvetGk 57  
                    + Gvl+   tG+P+ + t+ l     s+    +   + ++   G+y++ + tG 
    KIR63446.1  975 VKGVLTTAvTGQPLAGATVSLNPGNRSAITAADGSYQFTTVPVGEYAVAAATGD 1028
                    568886543899999999999988888888888888888888888888887775 PP

>> Phage_Mu_Gp45  Bacteriophage Mu Gp45 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   0.00015      0.27      40      81 ..     374     415 ..     364     418 .. 0.91
   2 ?   -1.4   0.1       1.1     2e+03      32      51 ..     920     940 ..     915     953 .. 0.70
   3 ?   -0.4   0.0      0.55   9.9e+02      58      88 ..     998    1028 ..     975    1032 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXX--S---SSSTT-EE CS
  Phage_Mu_Gp45  40 SvppaGaeaivlavgGdrshgvviavedrryRlkglkeGeva 81 
                    +++p G+ ++ + vg+ ++  vv av+   +Rl+gl++Ge +
     KIR63446.1 374 ATAPGGTATVTINVGATTGTRVVYAVAVDGSRLSGLAQGEFT 415
                    568899*********************************975 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
                    XXXXXXXXXXXX.XXXXXXXX CS
  Phage_Mu_Gp45  32 rfqpyGftSvpp.aGaeaivl 51 
                    ++ +yG  S+p  +Ga a v 
     KIR63446.1 920 IAFHYGAMSTPVqQGAGATVG 940
                    6679******98356665554 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.55
                     XXXXXXXXXX--S---SSSTT-EEEE-TTS- CS
  Phage_Mu_Gp45   58 shgvviavedrryRlkglkeGevalYddegq 88  
                     ++  +i  +d++y ++ +  Ge a+  ++g+
     KIR63446.1  998 GNRSAITAADGSYQFTTVPVGEYAVAAATGD 1028
                     4455889999999999999999998777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.78u 0.24s 00:00:01.02 Elapsed: 00:00:00.37
# Mc/sec: 12296.50
//
Query:       KIR63447.1  [L=133]
Description: pyridoxamine 5'-phosphate oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-15   55.0   0.0    9.3e-15   54.6   0.0    1.1  1  Putative_PNPOx   Pyridoxamine 5'-phosphate oxidase
    0.00085   19.3   0.0      0.001   19.1   0.0    1.1  1  Pyridox_ox_2     Pyridoxamine 5'-phosphate oxidase
  ------ inclusion threshold ------
      0.057   13.6   0.0      0.073   13.2   0.0    1.2  1  F420H2_quin_red  F420H(2)-dependent quinone reductase
       0.11   11.8   0.1       0.13   11.5   0.1    1.1  1  DUF4338          Domain of unknown function (DUF4338)
       0.13   12.2   0.0       0.16   11.9   0.0    1.2  1  DUF3821          Domain of unknown function (DUF3821)


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   2.6e-18   9.3e-15       3      84 ..       9      86 ..       8      89 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 2.6e-18
                    HHHHHHHHHSSEEEEEEEETTSEEEEEEEEEEEETTTTEEEEEEETTSHHHHHHHHH-EEEEEEEETTGSEEEEEEEEEEEE CS
  Putative_PNPOx  3 eelreflaeskavvlATvdedGrPnvspvllkagdgrdgivfatnadsrklrnleenprvallflddelgrgvrieGtaelv 84
                    +e+++ la++++v+l Tv+++G+P+v+pv++ +  ++   ++ t+++ rk+rn+  +prv+l + d +    v  eG a +v
      KIR63447.1  9 PEVLDRLAQERIVWLCTVRPNGSPHVTPVWFLFRGDE--WWIWTQERNRKVRNIVVDPRVSLALPDGK--FPVVAEGAAVIV 86
                    688899**************************99999..*************************9998..677777777776 PP

>> Pyridox_ox_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.9e-07     0.001       4     114 ..      10     105 ..       8     126 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.9e-07
                   HHHHHHHC-SEEEEEEEE.TTEEEEEEEEEEEETTEEEEEEETTSHCCHCCCT--ECEEEEEEEEEEE-SEGGEEEEEEEEEEEEEEEE--HHHHHH CS
  Pyridox_ox_2   4 eilalLdegevgrlafvd.dgepvilPvnyvvdgdslyfhgakgsrlaaalrgapvcvvvtevdglvlarsfnslnyrSVvvrGraeevtdeeekae 99 
                   e+l+ L+++++  l +v+ +g p+++Pv + ++gd+ ++ +++ +r+++ +  ++  v+++  dg     +     +  Vv+ G a  v  +   ++
    KIR63447.1  10 EVLDRLAQERIVWLCTVRpNGSPHVTPVWFLFRGDEWWIWTQERNRKVRNIV-VDPRVSLALPDG-----K-----F-PVVAEGAAVIV-RQPFPEW 93 
                   7888999999999999996677******************************.556666677888.....5.....8.99999999999.6666677 PP

                   HCCCHHHHHSTTTGG CS
  Pyridox_ox_2 100 alellvekivpgrwe 114
                   +++++ +k+    w+
    KIR63447.1  94 VDDGFRRKY---DWD 105
                   777777766...366 PP

>> F420H2_quin_red  F420H(2)-dependent quinone reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     2e-05     0.073      31      93 ..      25      82 ..       5     100 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2e-05
                     E-TTT-SEEEEEEEEEEETTEEEEE-SGGGGSSS-HHHHHHHH--EEEEEETTEEEEEEEEE- CS
  F420H2_quin_red 31 tGrktgkprktplgfvrdgdsylvvaskgGapkhpswylNlkanPrvevqvgakkldvtArev 93
                     t r  g p  tp+ f   gd++++  +          ++N+  +Prv +     k++v+A+ +
       KIR63447.1 25 TVRPNGSPHVTPVWFLFRGDEWWIWTQER-----NRKVRNIVVDPRVSLALPDGKFPVVAEGA 82
                     44789*******************98755.....6679************9999999999765 PP

>> DUF4338  Domain of unknown function (DUF4338)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   3.6e-05      0.13     102     138 ..      36      72 ..      33     108 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.6e-05
     DUF4338 102 palslaaRDewigwdkeerrenLknvvmdarfl.ilPy 138
                 p++ l   Dew +w+ +er+++++n+v d r+   lP 
  KIR63447.1  36 PVWFLFRGDEWWIWT-QERNRKVRNIVVDPRVSlALPD 72 
                 88999999*******.99999*********98545553 PP

>> DUF3821  Domain of unknown function (DUF3821)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.4e-05      0.16      48      92 ..      30      74 ..      17      88 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.4e-05
     DUF3821 48 enFyvsPaafggktGewYqldekkkgevaftveePslalkvwdln 92
                 +  v P  f  +  ew++++++ + +v  +v +P+++l + d +
  KIR63447.1 30 GSPHVTPVWFLFRGDEWWIWTQERNRKVRNIVVDPRVSLALPDGK 74
                555789999999999********999*************988855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       203  (0.0113224); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1021.91
//
Query:       KIR63448.1  [L=556]
Description: serine protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-35  122.4   0.3    5.4e-35  121.1   0.0    1.8  2  Peptidase_S8  Subtilase family


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0     0.099   1.8e+03      83     119 ..      43      79 ..      29     115 .. 0.64
   2 !  121.1   0.0     3e-39   5.4e-35       2     283 ..     158     507 ..     157     544 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.099
                   B-SSTTSEEEEEE-SSTTSB-HH..HHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  83 ngvapgakilsvkvldtsggsmetgteliraieeaae 119
                   +gv  +a i+++k+ ++   s +++ +l++ +++ a 
    KIR63448.1  43 SGVSADAAIAAIKAAGGTVVSRTDEVGLYQVTSDRAD 79 
                   5666777777777766666666655666655555554 PP

  == domain 2  score: 121.1 bits;  conditional E-value: 3e-39
                   TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.....GGEETT-SS-TT-.SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   2 kgvlvavlDtGvdpshpdlsvttdgerklvdvideegag....fngadsettstnw.arddngnsieHGthvAGiaaanapeegekngvapgakils 93 
                   + v+v+vlDtG+d s+pdl +      ++ ++ ++++a     ++g  + +   +  ++dd g    HGthvAG+++a  ++  + +gvap++++ +
    KIR63448.1 158 RRVTVGVLDTGLDASNPDLAA------NFSWSLSRNFAPdipeVDGPCEVASCLDPvGTDDGG----HGTHVAGTIGAA-ADGFGLSGVAPNVTLVE 243
                   679*****************5......566777777776333222222222222220333333....************.99999************ PP

                   EE-SSTTSB-HH..HHHHHHHHHHHHCT-SEEEE-EE..............SCETTCHHCHHHHHH............HHHHHH.CCT-EEEEE--S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  94 vkvldtsggsmetgteliraieeaaedkvdvinmslg..............estslpktgrsieal............ainravnkkgvlvviSaGN 164
                   +k +++sg      + +++a+  a + + dv+nms+                      ++                  a+n+a  +kgv +v S GN
    KIR63448.1 244 LKGGQDSGYFFL--DPVVNALVHAGKAGLDVVNMSFYvdpwlynctanpadS------PEA----QaeqratieamtrALNYAH-RKGVTLVGSLGN 327
                   ****88886553..9*********************9999988775533322......222....1222355677799999999.99********** PP

                   S-T-HH..................EEE-TTCEECTTTSTTCEEEEEESTTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHH... CS
                   xxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx... RF
  Peptidase_S8 165 ngktgs..................slqagspvgtpstsknvitvgayttegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglss... 240
                   n+++                     + + s   +p     vi+v+a+ + gk a++S++G ++      +++apGg     +++++     + s   
    KIR63448.1 328 NHEDLGaprtdfsspdygadpyerPIDNASCWDFPVEGPHVIGVSAVGPSGKKADYSNYGTEQI-----AVAAPGGWFRDGYGTDTY--RLD-Snmi 416
                   **5555667666666666555555555555555566667***********************97.....*******96666766662..222.2366 PP

                   .........................................EEEE-SHHHCHHHHHHHHHHHHHHHTT.......--HHHHHHHHHCCS-E CS
                   .........................................xxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxx RF
  Peptidase_S8 241 .........................................yqsmsGTSmAsPnaagaaAlllsalpk.......ltpetvraallntAqd 283
                                                            y++ +GTSmAsP+++g+aAl+ s++ k       + p++v++ l +tA  
    KIR63448.1 417 lsaypkhvlqeegsvdengnivagfeesvfkeckangdcgyYTYLQGTSMASPHVSGVAALIVSKYGKkvkgglgMDPDKVERQLYRTAAE 507
                   88899***********************************************************99999*******************954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3955.35
//
Query:       KIR63449.1  [L=369]
Description: hypothetical protein TK50_17550 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-06   28.2   0.0      3e-06   27.3   0.0    1.4  1  MTES_1575  REase_MTES_1575
    0.00011   22.0   0.2    0.00036   20.4   0.0    1.8  2  DUF559     Protein of unknown function (DUF559)


Domain annotation for each model (and alignments):
>> MTES_1575  REase_MTES_1575
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   3.3e-10     3e-06      36      95 .]     304     362 ..     291     362 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 3.3e-10
   MTES_1575  36 kyllaIecdgdkyhsskeardrdierqevLerlGWkilRiwssdwyrnpeeeleklveal 95 
                  +++a+e dg+ +h ++e+ +rd++r + L  +GW +l+++s+   r+  ++++++++al
  KIR63449.1 304 AFRVAVEYDGH-WHADAEQLHRDRQRLNHLVGAGWVVLHVTSRRLHRDFPAVVREVRAAL 362
                 689*******9.9999*******************************9999999888775 PP

>> DUF559  Protein of unknown function (DUF559)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.23   2.1e+03      21      39 ..      36      54 ..      29      58 .. 0.85
   2 !   20.4   0.0     4e-08   0.00036      53     107 ..     305     361 ..     297     363 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.23
                HHHHHGGGTTTT--EEEEE CS
      DUF559 21 LWqllrnrrlsglkfrRqk 39
                 W +lr++ + + + +R +
  KIR63449.1 36 SWLRLRQDVYADARLHRDH 54
                5999*****9999999986 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 4e-08
                 TTEEEEEE-------..----HHHHHHHHHTT-EEEEEEHHHHHH-HHHHHHHHHHH CS
      DUF559  53 aklivelDGaqhdee..eeyDaeRtelLeslGftvlRfkndevlknieevleeilka 107
                  ++ ve DG  h+++   ++D +R + L   G+ vl     +++++  +v+ e+ +a
  KIR63449.1 305 FRVAVEYDGHWHADAeqLHRDRQRLNHLVGAGWVVLHVTSRRLHRDFPAVVREVRAA 361
                 6999********97733579*******************************999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2571.73
//
Query:       KIR63450.1  [L=203]
Description: IclR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-13   47.8   0.6    9.1e-13   47.8   0.6    2.5  2  HTH_IclR   IclR helix-turn-helix domain
    2.2e-07   30.6   0.9    5.8e-07   29.3   0.9    1.6  1  MarR_2     MarR family
    0.00028   21.0   0.0    0.00062   19.9   0.0    1.6  2  HTH_17     Helix-turn-helix domain
    0.00029   20.7   0.0    0.00056   19.7   0.0    1.4  1  TrmB       Sugar-specific transcriptional regulator TrmB
    0.00049   19.8   0.0     0.0016   18.1   0.0    1.8  1  HTH_23     Homeodomain-like domain
     0.0015   18.5   0.1     0.0037   17.3   0.1    1.6  1  HTH_29     Winged helix-turn helix
     0.0025   17.9   0.1     0.0067   16.5   0.1    1.9  1  HTH_28     Helix-turn-helix domain
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.025   14.5   0.0    1.5  1  HTH_Crp_2  Crp-like helix-turn-helix domain
      0.016   15.2   1.3      0.024   14.7   0.2    1.9  2  HTH_20     Helix-turn-helix domain
       0.02   14.8   0.0      0.038   13.9   0.0    1.4  1  MarR       MarR family
       0.05   13.4   0.2       0.13   12.1   0.2    1.7  1  HTH_8      Bacterial regulatory protein, Fis family
      0.058   13.2   0.8       0.94    9.3   0.1    2.4  2  IclR       Bacterial transcriptional regulator


Domain annotation for each model (and alignments):
>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.6   6.1e-16   9.1e-13       3      52 .]       2      51 ..       1      51 [. 0.98
   2 ?    1.2   0.7      0.21   3.1e+02      18      29 ..      70      88 ..      62      91 .. 0.66

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 6.1e-16
                HHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE... CS
    HTH_IclR  3 dRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqdg 52
                dR+l++L ++a ap++lt++e A+r+g+ +++v+Rl+  L  +G+v++dg
  KIR63450.1  2 DRGLRLLHLVADAPGGLTVTEAANRLGIGRAAVYRLVGALSGHGMVRRDG 51
                8***********************************************97 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.21
                S.......-BHHHHHHHHT CS
    HTH_IclR 18 e.......ltlselArrtg 29
                +         l+ lA+++g
  KIR63450.1 70 PllaegalPALRRLAEQAG 88
                5555555338999999998 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.9   3.9e-10   5.8e-07       9      61 ..       6      54 ..       5      55 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 3.9e-10
                HHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
      MarR_2  9 rvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61
                r+L+ ++++pg+ ltv+e a rlg+ ++av r++  L+ +G+v+r  g  D+R
  KIR63450.1  6 RLLHLVADAPGG-LTVTEAANRLGIGRAAVYRLVGALSGHGMVRRD-G--DGR 54
                89*********9.******************************764.5..666 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   4.2e-07   0.00062       2      22 ..      18      38 ..      18      57 .. 0.85
   2 ?   -3.7   0.0       9.8   1.5e+04      23      31 ..      73      81 ..      71      83 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.2e-07
      HTH_17  2 ltveEaAelLgvsrstvyrli 22
                ltv EaA+ Lg++r+ vyrl+
  KIR63450.1 18 LTVTEAANRLGIGRAAVYRLV 38
                8*******************9 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 9.8
      HTH_17 23 rrgelpaak 31
                 +g lpa++
  KIR63450.1 73 AEGALPALR 81
                689999986 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.7e-07   0.00056      19      55 ..      14      50 ..       7      57 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.7e-07
                HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEE CS
        TrmB 19 klgpatadeiaeelgvprskvYevLrsLedkGlVere 55
                + g +t++e a++lg+ r+ vY+ +  L+  G+V+r 
  KIR63450.1 14 APGGLTVTEAANRLGIGRAAVYRLVGALSGHGMVRRD 50
                55899*****************************996 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.1e-06    0.0016       8      38 ..       5      38 ..       5      46 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-06
      HTH_23  8 lrillllae...GlsvreIAreLgvsrrTvyrwl 38
                lr l+l+a+   Gl+v+e+A +Lg+ r  vyr +
  KIR63450.1  5 LRLLHLVADapgGLTVTEAANRLGIGRAAVYRLV 38
                6899****************************87 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   2.5e-06    0.0037      11      54 ..      17      54 ..       7      61 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.5e-06
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrpr 54
                G+ tv ++A +lg+ r  vyr + +   +G     +r   g +r
  KIR63450.1 17 GL-TVTEAANRLGIGRAAVYRLVGALSGHG---MVRRD--GDGR 54
                44.9*******************9999999...33333..4443 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   4.5e-06    0.0067      11      34 ..      13      39 ..       5      54 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.5e-06
      HTH_28 11 a..Gh.svreaArelgisrrtvyrWik 34
                +  G+ +v+eaA++lgi+r  vyr++ 
  KIR63450.1 13 DapGGlTVTEAANRLGIGRAAVYRLVG 39
                455666******************985 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.7e-05     0.025      21      54 ..      17      51 ..       5      58 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.7e-05
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE.T CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglisr.g 54
                 lt +e A++lG+ r  v r+ ++L+ +g+++r g
  KIR63450.1 17 GLTVTEAANRLGIGRAAVYRLVGALSGHGMVRRdG 51
                47899***************************634 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   1.6e-05     0.024      19      61 .]      10      54 ..       5      54 .. 0.88
   2 ?   -2.1   0.1       2.7   4.1e+03      45      52 ..      80      88 ..      64      97 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.6e-05
                H..STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTEE CS
      HTH_20 19 L..araegltaselaerldlskntlsyHLrvLeeagLvevvregr 61
                L    ++glt++e a rl++ ++ +++ + +L+ +g v++ + gr
  KIR63450.1 10 LvaDAPGGLTVTEAANRLGIGRAAVYRLVGALSGHGMVRRDGDGR 54
                2577899*********************************99886 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.7
                HHHHHH.CT CS
      HTH_20 45 LrvLee.ag 52
                Lr L+e ag
  KIR63450.1 80 LRRLAEqAG 88
                344444444 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.6e-05     0.038       7      49 ..       6      49 ..       3      52 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.6e-05
                HHHHHHHHSTT.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        MarR  7 viLrilyeqgp.lsvseLakklgvskstvtrvldrLekkGlieR 49
                ++L+++++ ++ l+v+e a++lg+ +++v r++ +L  +G+++R
  KIR63450.1  6 RLLHLVADAPGgLTVTEAANRLGIGRAAVYRLVGALSGHGMVRR 49
                788899999888*******************************9 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   8.6e-05      0.13      21      37 ..      20      36 ..      17      36 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.6e-05
                HHHHHHHHTS-HHHHHH CS
       HTH_8 21 kskAArlLGisRrtLyr 37
                +++AA++LGi+R  +yr
  KIR63450.1 20 VTEAANRLGIGRAAVYR 36
                79**********99997 PP

>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00063      0.94       6      28 ..     117     139 ..     113     144 .. 0.86
   2 ?    2.1   0.1      0.11   1.6e+02      71     127 ..     148     198 ..     139     200 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00063
                 TTSTT-EEEGGGSHHHHHHHHTS CS
        IclR   6 vsaiGtrlplyataiGKalLaal 28 
                   + Gtr pl   a+G+a+Laa 
  KIR63450.1 117 AYRTGTRHPLERGAAGRAILAAR 139
                 4589*****************87 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.11
                 EESSSSTTEEEEEEEEE-TTSSEEEEEEEEEETTTSHHHHHHHHHHHHHHHHHHHHH CS
        IclR  71 dreEeeegvrciAapifdasgevvaAvsvsgptarlteeelkeellalvreaArkis 127
                 +++E + g   +Aap+ +      a v v++    l   + ++ + ++v +aA++is
  KIR63450.1 148 TSGELQPGAYGVAAPVLGV-PGLEASVGVVA----LAPLDPES-VGEQVLAAAAAIS 198
                 5678888888888888873.23333444433....33333333.5556666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1520.59
//
Query:       KIR63451.1  [L=214]
Description: phosphoglycerate mutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-25   88.6   1.5    6.9e-24   84.6   1.5    2.0  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   1.5   3.8e-28   6.9e-24       1     192 [.       6     194 ..       6     196 .. 0.78

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 3.8e-28
                 EEEEE---BTTB--.......TT----...B-HHHHHHHHHHHHHHTTS---EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHH CS
  His_Phos_1   1 lyLvRHGetewnaegr...lqgrtdvp...LteeGreqAealaerlagepidaiysSplkRarqTaeliaealglpveldegLrEidfGdweglttaei 93 
                 l+L+RHGe +  a+g     +  +d+p   L+++Gr+qAe l+erl+++p++a+ + pl Ra qTa l+a+ l   +    +L        + l++++ 
  KIR63451.1   6 LFLARHGEQDRPADGQdgpDGASGDPPevgLSARGRRQAELLGERLREVPFAAVHHGPLPRAAQTAGLVARSLPGVPVYATELAG------DHLPHDTD 98 
                 78*********7777655544455555666********************************************66666666766......57788999 PP

                 HHH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS-.EEEEEE CS
  His_Phos_1  94 aeeypeeleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglpleelrrleldnaslsvlefdegg.wrlvrl 191
                  +  p ++++ l+  + +   +      ++a ++a + ++ a+  +++vlvV+H  +i  l++++l+ p+ ++  l ++na+l+v+++++ g  +lv++
  KIR63451.1  99 PAGLPPAYARLLAAYSPA---ERVDGPRLTAAAVARFAAVPADG-DDRVLVVTHTFLIAWLVRHALDAPPGRWLGLGHHNAGLTVIRYHSVGpATLVAV 193
                 999999999988876632...23333333333344444444444.456*****************************************9873455555 PP

                 E CS
  His_Phos_1 192 n 192
                 n
  KIR63451.1 194 N 194
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       164  (0.00914719); expected 358.6 (0.02)
Passed bias filter:                      129  (0.00719505); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1467.04
//
Query:       KIR63452.1  [L=269]
Description: enoyl-CoA hydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-43  148.5   0.1    2.4e-43  148.3   0.1    1.0  1  ECH_1     Enoyl-CoA hydratase/isomerase
    4.8e-25   88.8   0.0    5.8e-25   88.5   0.0    1.1  1  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.3   0.1   2.7e-47   2.4e-43       5     215 ..      15     222 ..      11     244 .. 0.93

  Alignments for each domain:
  == domain 1  score: 148.3 bits;  conditional E-value: 2.7e-47
                 TEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHCHHHHHHHCCHHHHHHHHHHSSSEEEEEE-SEEETHH CS
       ECH_1   5 gvaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeekakqallkeevlelwtklytvpkpviaavnGaaigGG 103
                  va i + +P   Na++ ++   l   l +le d+ +ra vLtG  + F+aGadl ++ e   a +a++  +     ++l     p++aa++Ga++gGG
  KIR63452.1  15 PVATIVISNPGRRNAMTRAMWRRLPVLLDRLEADERIRALVLTGAAGTFCAGADLGDLDELLDAGDASIAVAA---EERLAAFARPTVAAIEGACVGGG 110
                 699********************************************************97545555555444...567788999************** PP

                 HHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHHHSCHHHHHHHH CS
       ECH_1 104 lelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaeklaekspaalrqlk 202
                 ++la+acD++ aa +a+fg + ++lGl+ +a  t +lar vG s+A+++l +++ i a+ al++Glvd+v+p + l     +l + +ae s++ ++++k
  KIR63452.1 111 CQLAVACDLRLAAADARFGVPPARLGLVYPAPTTRRLARLVGPSAAKHLLFTAELIDAERALRIGLVDEVLPPDGLAARVAALTATIAERSRLTVAAAK 209
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHH CS
       ECH_1 203 ealnakledalae 215
                 e+++  ++ + ++
  KIR63452.1 210 EIVDDRADAERIA 222
                 ***9998866655 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.0   6.5e-29   5.8e-25       2     201 ..      17     210 ..      16     235 .. 0.88

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 6.5e-29
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEET CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivmG 100
                 ++i + +p   Na++ +m r+l   l++ e+d++++++vl+ga    fCAG D+  l e  ++g+++         + + ++a + +p+va ++G ++G
  KIR63452.1  17 ATIVISNPGRRNAMTRAMWRRLPVLLDRLEADERIRALVLTGAA-GTFCAGADLGDLDELLDAGDAS------IAVAAEERLAAFARPTVAAIEGACVG 108
                 689999************************************87.89****************9977......344556799***************** PP

                 HHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT........--- CS
       ECH_2 101 gGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpseklealeeaLaelessdeeaveev 198
                 gG+ l+v + +r +  +++f +P  ++Gl+    ++  L+rl g + +++l  T++ ++++ al +gl + ++p + l+a  +aL+++  ++++ + ++
  KIR63452.1 109 GGCQLAVACDLRLAAADARFGVPPARLGLVYPAPTTRRLARLVGpSAAKHLLFTAELIDAERALRIGLVDEVLPPDGLAARVAALTATIAERSRLTVAA 207
                 ******************************************88799******************************9999999998755543333333 PP

                 --- CS
       ECH_2 199 lee 201
                 ++e
  KIR63452.1 208 AKE 210
                 333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1911.69
//
Query:       KIR63453.1  [L=582]
Description: potassium transporter TrkA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-31  107.7   0.0      2e-21   76.4   0.2    2.6  2  TrkA_N          TrkA-N domain
    1.4e-07   31.3   0.1    5.6e-07   29.3   0.0    2.1  2  TrkA_C          TrkA-C domain
    0.00013   21.4   0.1    0.00022   20.6   0.1    1.3  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    0.00026   21.4   0.0      0.037   14.5   0.1    3.0  2  NAD_binding_7   Putative NAD(P)-binding
     0.0053   16.3   0.3      0.011   15.3   0.3    1.5  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
  ------ inclusion threshold ------
       0.02   14.2   0.2      0.036   13.3   0.2    1.3  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      0.027   13.7   1.0      0.052   12.8   1.0    1.5  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.034   15.0   0.0       0.09   13.6   0.0    1.8  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
      0.054   14.1   0.2       0.23   12.0   0.1    2.1  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
       0.06   12.9   0.6        0.1   12.2   0.6    1.3  1  Ni_hydr_CYTB    Prokaryotic cytochrome b561
      0.079   12.6   0.1       0.18   11.4   0.1    1.6  1  ApbA            Ketopantoate reductase PanE/ApbA
      0.081   13.4   0.9       0.16   12.4   0.1    2.0  1  XdhC_C          XdhC Rossmann domain
       0.13   12.1   0.2       0.22   11.4   0.2    1.3  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 


Domain annotation for each model (and alignments):
>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0     1e-09   1.4e-06       1     114 [.      11     132 ..      11     134 .. 0.88
   2 !   76.4   0.2   1.5e-24     2e-21       1     108 [.     342     451 ..     342     461 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1e-09
                 EEEES-SHHHHHHHHHHHHTT.....EEEEEEESSHHHHHHHHHTT...SEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSE CS
      TrkA_N   1 iiiiGlGrvGrslaeeLsegg.....kdvvvidkdeerveelreeg...levvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkk 91 
                 ++++G   +++ +++ L + +      +++++  +++r +    +    l+vv +d  de + ++ag+  ad++  + +dd  n+ a+l a+e  p ++
  KIR63453.1  11 YVVCGSDPLAYWVVRALLATEldsgrARITLVVPERRRSDGPDGRDlpgLHVVRADRLDEVTFRRAGLTGADGLALLHQDDVGNMHAALCAQEVEPRLR 109
                 688888888888888888866688885699999999998888766645577************************************************ PP

                 EEEEESSGGGHHHHHHHTTSEEE CS
      TrkA_N  92 iiaraqdpehaellkklgadvvi 114
                  ++r+ + + a+ l++l  d ++
  KIR63453.1 110 LVVRMFNTSLANGLRQLFPDSAV 132
                 ************99998777665 PP

  == domain 2  score: 76.4 bits;  conditional E-value: 1.5e-24
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHH..HHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEE CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeer..veelreeglevvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiara 96 
                 ++++GlG++G++++ +L++ g  +vv+idkd+++  +  + + g++vv+gda +ee+L++a +e+++a++++  dd++n+ a+l+a+ l p+++++ r 
  KIR63453.1 342 VVVVGLGNIGTRVMAQLNDfGV-EVVAIDKDPDArgASLAHRLGVPVVIGDAGREETLRSASVETCQALVVVSTDDDVNLRAALNARGLTPDLRVVLRL 439
                 79*****************777.5********987677778888******************************************************* PP

                 SSGGGHHHHHHH CS
      TrkA_N  97 qdpehaellkkl 108
                  d ++ae ++k+
  KIR63453.1 440 FDGDFAERVQKA 451
                 *****9999883 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.1   7.1e+03      22      35 ..     358     371 ..     355     376 .. 0.74
   2 !   29.3   0.0   4.1e-10   5.6e-07       1      67 [.     490     557 ..     490     559 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.1
                 HHHHS-EEEEEE-T CS
      TrkA_C  22 lrargvlvvairRg 35 
                 l + gv vvai ++
  KIR63453.1 358 LNDFGVEVVAIDKD 371
                 5566999***9755 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 4.1e-10
                 CEEEEEE--GGGTTSBHHHHTHHHHS-EEEEEE-T..-EEES--TT-B--TT-EEEEEEEHHHHHHHHH CS
      TrkA_C   1 lvevtvpagsplvGktlkelnlrargvlvvairRg..geliipsgdtvLeeGDvllvvgspsdlaelre 67 
                 ++ev v agspl+G +l+ +  +   v+++a+ R+  +   ++++ +v+++GD+l+vv+ +++l +l +
  KIR63453.1 490 VTEVQVVAGSPLDGSPLSAVAQPG-AVRLLAHARPgqKADWSADPRLVITAGDRLTVVARRAGLTALLR 557
                 6799***************88888.*******9999999999******************999877655 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   1.6e-07   0.00022      34      71 ..     337     374 ..     320     388 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.6e-07
                   GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHH CS
  2-Hacid_dh_C  34 lsgktvGiiGlGrIGqavakrlkafgmkviaydrskkk 71 
                    +   v ++GlG+IG++v+  l+ fg++v+a+d+ +++
    KIR63453.1 337 ARSGHVVVVGLGNIGTRVMAQLNDFGVEVVAIDKDPDA 374
                   5667899**************************98774 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.076     1e+02       9      46 ..      10      69 ..       6     188 .. 0.74
   2 !   14.5   0.1   2.7e-05     0.037       8      78 ..     340     422 ..     336     432 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.076
  NAD_binding_7  9 kvlvvGgGevAarkvrklleag.....akvtvvapevkeele..................e 46
                   + +v G  ++A+  vr ll+++     a++t+v pe  + ++                  +
     KIR63453.1 10 HYVVCGSDPLAYWVVRALLATEldsgrARITLVVPE-RRRSDgpdgrdlpglhvvradrlD 69
                   78999*******99999999877777899****999.333335666666655444333332 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.7e-05
  NAD_binding_7   8 kkvlvvGgGevAarkvrklleagakvtvvapevkeele...............elvkl.aeeel.ekdlegadlviaatddrelneri 78 
                     +v+vvG G++++r + +l ++g +v+ ++++                     +  ++ +ee+l ++++e  + ++++ +d+++n r 
     KIR63453.1 340 GHVVVVGLGNIGTRVMAQLNDFGVEVVAIDKDP---DArgaslahrlgvpvviG--DAgREETLrSASVETCQALVVVSTDDDVNLRA 422
                    59***************************9994...222333333333322110..12123334346677776444444455555554 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.3   7.9e-06     0.011       3      33 ..     342     372 ..     340     378 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.9e-06
                     EEEE--STTHHHHHHHHHHCTSEEEEE-S-H CS
  UDPG_MGDP_dh_N   3 isviGlGYvGlvtaavlaeighevigvDide 33 
                     ++v+GlG +G   +a l+  g+ev+ +D+d 
      KIR63453.1 342 VVVVGLGNIGTRVMAQLNDFGVEVVAIDKDP 372
                     89**************************996 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   2.6e-05     0.036     135     176 ..     333     373 ..     312     385 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.6e-05
                  HHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 135 alklkllpkrivvvGgGyiGvElAaalaklgkevtlveardr 176
                  +++ +    ++vvvG G+iG+ + a+l+++g+ev+ ++  + 
   KIR63453.1 333 RIQPARS-GHVVVVGLGNIGTRVMAQLNDFGVEVVAIDKDPD 373
                  4444444.59************************99988766 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.0   3.8e-05     0.052      19      64 ..     330     375 ..     321     417 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.8e-05
                  TTCEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHH CS
  AlaDh_PNT_C  19 laGgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrparl 64 
                    G+++ ++ ++v+v+G G  G+  +a  + +g +V+++D++p+++
   KIR63453.1 330 HTGRIQPARSGHVVVVGLGNIGTRVMAQLNDFGVEVVAIDKDPDAR 375
                  579999999*********************************9875 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.5e-05      0.09       2      71 ..     341     414 ..     340     437 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.5e-05
                   EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE.EESS..HHHHHTCT...TESEEEE-S- CS
  GFO_IDH_MocA   2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve.aysd..leelladp...eidavivatp 71 
                   +v+++G+G+ig++ +++ln+   + evva+ +   +r   +a+++gv+ +  d   ee l++     ++a++v++ 
    KIR63453.1 341 HVVVVGLGNIGTRVMAQLNDF--GVEVVAIDKDPDARGASLAHRLGVPvVIGDagREETLRSAsveTCQALVVVST 414
                   79*************899988..899999988888899999*******5444466333333332435777766664 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00017      0.23       1      32 [.     341     372 ..     341     383 .. 0.89
   2 ?   -2.3   0.0       5.1   7.1e+03      34      49 ..     436     451 ..     433     452 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversd 32 
                 +vvvvG G+ig  + + l+++g +V  ++  +
  KIR63453.1 341 HVVVVGLGNIGTRVMAQLNDFGVEVVAIDKDP 372
                 89***********************9998766 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.1
                 SSTTSSHHHHHHHHHH CS
   Pyr_redox  34 llrllDeeaskilqek 49 
                 +lrl+D ++++++q+ 
  KIR63453.1 436 VLRLFDGDFAERVQKA 451
                 5799********9985 PP

>> Ni_hydr_CYTB  Prokaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6   7.4e-05       0.1      49     154 ..     245     347 ..     205     351 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.4e-05
                   HHHHHHHHHHHHHHHH------------STTTSSSSS----------------TT.THHHHHHHHHHHHHHHHHHHTHHHHHHHH...HTS-THHHH CS
  Ni_hydr_CYTB  49 aGlvllalllfrllwlkkakkpspriifrqikrdltlllrgrkpeagknnplqkl.vhlllyvllvvliltGlllsfaatagfplllddkggaqlar 144
                   +G+++l+ll++ +++++ + +  +  +  ++   l+++l+g++p++ k  + q + v+l l  l ++  +t +++     a++ l   + g  q+ar
    KIR63453.1 245 IGIAVLVLLAVIAALGWLNARAAHVGWADALYLTLVTTLTGEDPDVAKPVAAQIMqVVLNLAGLALIPLITAVVVDGIVNARLAL---HTGRIQPAR 338
                   5666666665555555458888888888888999999****************99966666666666667777776666678888...********* PP

                   HHH.HHHHHH CS
  Ni_hydr_CYTB 145 elHellaaal 154
                   + H +++++l
    KIR63453.1 339 SGH-VVVVGL 347
                   ***.777665 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00013      0.18       1      31 [.     342     372 ..     342     411 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr 31 
                 ++++G+G iG+ + a+L   g +v+ i++++
  KIR63453.1 342 VVVVGLGNIGTRVMAQLNDFGVEVVAIDKDP 372
                 689************************9987 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00012      0.16       1      60 [.     342     422 ..     342     435 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG..................-GGG-TT-SE......-EEEE--S-HHHHHHH CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefa..................tkerfpeade......tavvvlthdhklDaea 60 
                 +v++G g+++  +++ ++ +g++v+ +d++++++                  ++e +    +      +a+vv++ d +   +a
  KIR63453.1 342 VVVVGLGNIGTRVMAQLNDFGVEVVAIDKDPDARgaslahrlgvpvvigdagREETLR---SasvetcQALVVVSTDDDVNLRA 422
                 689****************************855666666666666666665334444...04457787777777775544433 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00016      0.22       1      37 [.     341     377 ..     341     420 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdiseealek 37 
                 +v v+G G +G+ + a++   g+eVv +d +++a  +
  KIR63453.1 341 HVVVVGLGNIGTRVMAQLNDFGVEVVAIDKDPDARGA 377
                 599***************************9998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4115.80
//
Query:       KIR63454.1  [L=403]
Description: lipopolysaccharide kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-62  210.4   2.9      2e-62  209.9   2.9    1.2  1  DUF4032   Domain of unknown function (DUF4032)
    3.7e-10   39.5   0.1    6.6e-08   32.2   0.0    2.3  2  Kdo       Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.015   15.4   0.0      0.028   14.5   0.0    1.4  1  DUF3258   Protein of unknown function DUF3258


Domain annotation for each model (and alignments):
>> DUF4032  Domain of unknown function (DUF4032)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.9   2.9   3.3e-66     2e-62       1     163 []     226     385 ..     226     385 .. 0.98

  Alignments for each domain:
  == domain 1  score: 209.9 bits;  conditional E-value: 3.3e-66
     DUF4032   1 eLWeelteeevfeaderyrieerirrlneLGFdveeleletdedgerlrlrpkvvdaghhrrrLlrLTGldveenQArrlLndlesyraelekeevdee 99 
                 +LW+e+t e+++e++ r+ ie+rirrlneLGFdv+e++l+t  dg r  +rpkvvdag+h+rrLlrLTGld+eenQAr+lLndl++yrae++   +de+
  KIR63454.1 226 RLWHEITYEQQVERKARHDIERRIRRLNELGFDVAEVALSTLGDG-RYLVRPKVVDAGYHHRRLLRLTGLDAEENQARKLLNDLDAYRAESD--LTDEQ 321
                 69****************************************999.7789***************************************997..78899 PP

     DUF4032 100 vvAhrWltevfepvvaaipaelrgklepaevfhelLehrwylseeagrdvgleeavesyvekvl 163
                 +++hrWltevfepvv+a+pa+lr+klep e+f +++eh+w+lse+agrdvg+++av+sy+++vl
  KIR63454.1 322 QASHRWLTEVFEPVVRAVPAHLRRKLEPQELFAQIIEHKWLLSERAGRDVGMRHAVQSYLADVL 385
                 9***********************************************************9997 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   1.1e-11   6.6e-08      52     184 ..      54     188 ..      48     192 .. 0.86
   2 !    4.9   0.1    0.0024        14      89     139 ..     200     257 ..     188     261 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 1.1e-11
         Kdo  52 k.lgrtravrEfrllkrLeeagvavpkpvaaga..vkvgle.yrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlya 146
                 k  g+  a rE++ll++Le+  ++  ++va  a  + +++e    +l+t++l+      +l    ++l  e   +ll a+++li ++h  g   +d+  
  KIR63454.1  54 KeTGERVAEREYDLLRALERIDFPSVEAVAIVAdrQTDDGEpLDPVLITRHLQFSLPYRALFS--HTLRPETMGRLLDALAALIVRMHLTGFFWGDCSL 150
                 556777799*****************99986651155678899*********97766666666..58999999************************** PP

         Kdo 147 knillqqeeeeeaeiwliDldkarlrlr.adrwrekdLa 184
                  n l++ ++ +++ ++l+D + ++l +   +  r +dL+
  KIR63454.1 151 SNTLFRRDA-GAFAAYLVDAETGALHSSlSNGQRGEDLE 188
                 ********7.*************9998878888888885 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0024
         Kdo  89 e.yrAlllterlegaqdLedllakwae......laeelkrallkavgrliaklhragv 139
                   + A ll e +++    e++++++++      ++++++r+  +++ r i++l+++g 
  KIR63454.1 200 DlQAAGLLHESIDPEVVCEEVVQRYERlwheitYEQQVERKARHDIERRIRRLNELGF 257
                 54668899999999999998888855555559999*******************9986 PP

>> DUF3258  Protein of unknown function DUF3258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.7e-06     0.028      30      89 ..     221     300 ..     207     304 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.7e-06
                 EEEEEEEEEEE-TTS-EEEEEEEEEEHHHHHTT-S....................-.....-TTS-----------SS-H CS
     DUF3258  30 YkRfliaWvevdkDkkieeykvkdieifidiisdL....................Pkrnkreykkkawveelnidvaedd 89 
                  +R++  W e+  ++++e + ++die  i + ++L                    Pk     y+ + +     +d  e++
  KIR63454.1 221 VQRYERLWHEITYEQQVERKARHDIERRIRRLNELgfdvaevalstlgdgrylvrPKVVDAGYHHRRLLRLTGLDAEENQ 300
                 58*********************************999999999999999999999999999999888888888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2722.76
//
Query:       KIR63455.1  [L=199]
Description: ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-21   75.6   0.5    1.3e-19   70.9   0.5    2.2  1  ATP_bind_1  Conserved hypothetical ATP binding protein
     0.0077   15.8   0.2      0.029   14.0   0.2    1.9  1  Ras         Ras family
     0.0088   15.6   0.0      0.012   15.1   0.0    1.2  1  GTP_EFTU    Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.078   12.9   0.2        1.9    8.4   0.7    2.1  2  NTPase_1    NTPase
      0.086   13.1   0.1       0.63   10.3   0.1    2.0  1  Roc         Ras of Complex, Roc, domain of DAPkinase
       0.12   11.5   0.7       0.18   11.0   0.7    1.1  1  DBI_PRT     Phosphoribosyltransferase
       0.32   10.7   1.4       0.37   10.5   0.4    1.5  2  AAA_24      AAA domain
        1.5    9.4   2.9        1.5    9.3   0.7    2.0  2  AAA_18      AAA domain
        2.2    7.3   4.4       0.59    9.1   1.3    1.6  2  T2SSE       Type II/IV secretion system protein


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.5   6.6e-23   1.3e-19       1     169 [.      23     147 ..      23     188 .. 0.91

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 6.6e-23
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDPAaeelpYeaavdirelitledvmed..lglgpngalvvaleflresldwldeelekeeddyllfD 97 
                 v+G++G+GKtt vga+sei++l+                       ++  +t + +  d       +++++va++f++ ++   d++l     +++lf+
  KIR63455.1  23 VAGGFGVGKTTTVGAISEIAPLT-----------------------TEAEMTSAGIGIDdpGARSGKTTTTVAMDFGCVTI---DRSL-----KLYLFG 90 
                 89*********************.......................99999999999998777889**************9...999*.....****** PP

  ATP_bind_1  98 tPGQielfthseslakiveeLesefalvvvyLvDsqrltd...ptkfisgllsalsamlrlelPhvvvlnkfDll 169
                 tPGQ ++ +++++la        ++al+++++vDs rl+d   +++f+++          ++lP+vv +n fD+ 
  KIR63455.1  91 TPGQNRFGFMWDDLA--------RGALGALVVVDSSRLDDcypAIDFFER----------AGLPFVVGVNAFDGR 147
                 ***************........***************************..........*************94 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   1.5e-05     0.029       1      80 [.      20     116 ..      20     126 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
                 EEEEEESTTSSHHHHHHHHHHSS.CSSSCTTT...SSEE.......EEEEEEEET......TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE CS
         Ras   1 KlvlvGdsavGKtslllrfvkdk.FkeeyesT...igvd.......fytkeievd......gkevkleiwDTAGqeefkslrelyyrdaegillvyd 80 
                 K+++ G  +vGKt+ +    +    ++e e+T   ig+d       ++t+++ +d      ++++kl ++ T Gq++f  + +   r+a g+l+v d
  KIR63455.1  20 KILVAGGFGVGKTTTVGAISEIApLTTEAEMTsagIGIDdpgarsgKTTTTVAMDfgcvtiDRSLKLYLFGTPGQNRFGFMWDDLARGALGALVVVD 116
                 677888888888887766655321344444333337777777776656666666688888899*******************************976 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   6.3e-06     0.012       5     130 ..      20     142 ..      18     156 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.3e-06
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE..TTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEE CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle..ketkkylinliDtPGHvdFskevirglrvlDgavlvv 101
                 +i ++g    GKtT+++++ + +  +++++++    + +   +   + g T ++ a+ +   +  ++ ++ l  tPG   F       +r + ga++vv
  KIR63455.1  20 KILVAGGFGVGKTTTVGAISEIAPLTTEAEMTS---AGIGIDDPGARSGKTTTTVAMDFGcvTIDRSLKLYLFGTPGQNRFGFMWDDLARGALGALVVV 115
                 6899999*************9888888866544...467777788888888888888888655778899999*************************** PP

                 ETTTBSTHHHHHHHHHHHHTTTEEEEEEE CS
    GTP_EFTU 102 daveGvepqteevlrlalkegvpiivfiN 130
                 d++          +    + g+p++v +N
  KIR63455.1 116 DSS--RLDDCYPAIDFFERAGLPFVVGVN 142
                 *87..344555555555555555555555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.7   0.00095       1.9       1      22 [.      20      41 ..      20      72 .. 0.84
   2 ?    2.0   0.0     0.084   1.7e+02      41      88 ..      93     137 ..      89     150 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00095
                EEEEE--TTSSHHHHHHHHHHH CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvlel 22
                k+++ G  GvGKtT v  ++e 
  KIR63455.1 20 KILVAGGFGVGKTTTVGAISEI 41
                5899***********9888764 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.084
                 -----EEEEEET.T--EEEEEETT---SSEETTEEE-HHHHHHHHHHH CS
    NTPase_1  41 ggrrigFkivdlasgeegiLarveakreprvgkyvvdvesfeelalea 88 
                 g++r gF   dla g  g L  v+   + r++  +  ++ fe+ +l+ 
  KIR63455.1  93 GQNRFGFMWDDLARGALGALVVVD---SSRLDDCYPAIDFFERAGLPF 137
                 678******************999...778888888888888887775 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00032      0.63       1      91 [.      20     119 ..      20     132 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00032
                 EEEEESSTTSSHHHHHHCHCT....-CCC-EEETTTTEEEEE....EECGGSG...GCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE CS
         Roc   1 KvvlvGdsgvGKtsllkrfve....dkfsekekstigvdflt....kevtkik...gvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd 88 
                 K+++ G  gvGKt+ +  + e     +  e +++ ig+d       k++t++    g    +  +++kl ++ t Gq+rf  + +   r+a  a++v+d
  KIR63455.1  20 KILVAGGFGVGKTTTVGAISEiaplTTEAEMTSAGIGIDDPGarsgKTTTTVAmdfG--CVTIDRSLKLYLFGTPGQNRFGFMWDDLARGALGALVVVD 116
                 889999999999999998887433233334445555555321222233333321111..2223357899***************************999 PP

                 GHH CS
         Roc  89 srs 91 
                 s++
  KIR63455.1 117 SSR 119
                 765 PP

>> DBI_PRT  Phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.7   8.9e-05      0.18     152     197 ..      19      64 ..      17      85 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.9e-05
                 ECEEEEEEE-TTCHHHHHHHHHHHHT--HHHH---TTT--HHHHHH CS
     DBI_PRT 152 adllalGemGigNttaaaallaallglepeevvGrGtglddeglar 197
                 +++l++G  G+g tt+  a+  +   ++ +e++  G g+dd g + 
  KIR63455.1  19 VKILVAGGFGVGKTTTVGAISEIAPLTTEAEMTSAGIGIDDPGARS 64 
                 689**************************************98765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00018      0.37       3      33 ..      19      48 ..      17      61 .. 0.79
   2 ?   -2.5   0.0       1.8   3.5e+03      13      22 ..      64      73 ..      60      86 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00018
      AAA_24  3 lkiliyGpsgiGKTtlakelgpkplfidtek 33
                +kil+ G  g+GKTt++  +  +++ + te+
  KIR63455.1 19 VKILVAGGFGVGKTTTVGAI-SEIAPLTTEA 48
                79**************9888.6666666655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.8
      AAA_24 13 iGKTtlakel 22
                +GKTt+   +
  KIR63455.1 64 SGKTTTTVAM 73
                7999987666 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.7   0.00078       1.5       1      20 [.      21      40 ..      21      58 .. 0.90
   2 ?   -0.8   0.1         1   2.1e+03       8      17 ..      63      72 ..      61      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00078
      AAA_18  1 IlltGtpGvGKttlakeLsk 20
                Il++G  GvGKtt   ++s+
  KIR63455.1 21 ILVAGGFGVGKTTTVGAISE 40
                99************999987 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1
      AAA_18  8 GvGKttlake 17
                ++GKtt + +
  KIR63455.1 63 RSGKTTTTVA 72
                69***99865 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.3    0.0003      0.59     131     154 ..      20      43 ..      16      60 .. 0.85
   2 ?   -2.1   0.1      0.78   1.6e+03     139     148 ..      63      72 ..      60      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0003
       T2SSE 131 lilvsGgTgsGKttllyallkein 154
                  ilv+Gg g GKtt++ a+ ++ +
  KIR63455.1  20 KILVAGGFGVGKTTTVGAISEIAP 43 
                 69**************99988766 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.78
       T2SSE 139 gsGKttllya 148
                  sGKtt++ a
  KIR63455.1  63 RSGKTTTTVA 72 
                 59****9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1295.43
//
Query:       KIR63456.1  [L=123]
Description: hypothetical protein TK50_17725 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-24   86.3   0.1    1.4e-24   86.1   0.1    1.0  1  DUF742    Protein of unknown function (DUF742)


Domain annotation for each model (and alignments):
>> DUF742  Protein of unknown function (DUF742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.1   7.7e-29   1.4e-24       7     113 ..      12     121 ..       7     122 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 7.7e-29
      DUF742   7 vRpyaltgGrtrpee.dldletlvvaeagap...ea...arlqpehrailrLcreplsVaelaAelklPvgvvrvLlsdLldaglltvrapvtdraaeq 98 
                  Rp++lt Gr    + +++let+v+a++g p    a   +rl+pe +ai++Lc ep sVae++A+++l +gv+r+L++dL +ag+l v+ ++++   + 
  KIR63456.1  12 PRPFVLTSGRVAGVDpAISLETQVTARPG-PglrGAgpvSRLAPELQAIIALCGEPISVAEISARTRLHFGVTRILVGDLRAAGHLDVHVSTAN---DA 106
                 5*********987777************8.5354115559*************************************************99997...67 PP

      DUF742  99 pdrelLeevlsGLrr 113
                  d +++ +v++GLr+
  KIR63456.1 107 LDPDIILRVIDGLRA 121
                 8999*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       196  (0.010932); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 992.29
//
Query:       KIR63457.1  [L=71]
Description: hypothetical protein TK50_17800 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       166  (0.00925874); expected 358.6 (0.02)
Passed bias filter:                      128  (0.00713927); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 561.76
//
Query:       KIR63458.1  [L=838]
Description: peptidase S8 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-36  126.1   0.0    2.2e-36  125.7   0.0    1.2  1  Peptidase_S8  Subtilase family
  ------ inclusion threshold ------
       0.27   10.0   4.8       0.59    8.9   4.8    1.5  1  DUF2079       Predicted membrane protein (DUF2079)
       0.66   10.0   5.0        1.5    8.8   5.0    1.5  1  DUF2076       Uncharacterized protein conserved in bacteria (


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.7   0.0   3.6e-40   2.2e-36       1     285 [.     544     809 ..     544     826 .. 0.86

  Alignments for each domain:
  == domain 1  score: 125.7 bits;  conditional E-value: 3.6e-40
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvl 97 
                   g g++v+  D+Gvd  hp l                   gf+g+d   +++ + +    ++  HGth+ G a++         gvapga++ +  +l
    KIR63458.1 544 GAGIVVGSSDSGVDGRHPALA-----------------GGFRGGDDSWYDPWDHTRAPTDQGGHGTHTTGSAVGR-----DGIGVAPGASWVGCVNL 618
                   789******************.................3488888887777777777776777************.....999************** PP

                   STTSB-HH..HHHHHHHHHHHHCT-S............EEEE-EESCETTCHHCHHHHHH..HHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEEC CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  98 dtsggsmetgteliraieeaaedkvd............vinmslgestslpktgrsieal..ainravnkkgvlvviSaGNngktgsslqagspvgt 180
                   d ++gs     + ++ +   +  + d            v+ +s+g     p  g +++al  a++++    g++vv++aGN g      +   ++++
    KIR63458.1 619 DRNLGSPARYLDCLQFMLAPFPAGGDpftdgrperapqVLTNSWG---CPPIEGCDPAALrpAADALD-AAGIFVVAAAGNTG------PYCRSIED 705
                   ******98889999998888888888889999999999*******...44444444554563555555.99************......77778888 PP

                   .TTTSTTCEEEEEESTTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT..--HHHHH CS
                   .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF
  Peptidase_S8 181 .pstsknvitvgayttegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpk..ltpetvr 274
                    p+t+  v tvga++ + ++a+fSsrGp+  g++kpd+vapG+ ++s ++  +        y +  GTSmA+P +ag++Al++sa+p+     e  r
    KIR63458.1 706 pPATYPDVFTVGATDRDRQVADFSSRGPVP-GAAKPDVVAPGVGVLSAMPGGG--------YATLDGTSMAAPQVAGVVALMWSANPAliGDLERTR 793
                   799999**********************98.9*********************........***************************9989999** PP

                   HHHHCCS-EE...... CS
                   xxxxxxxxxx.....x RF
  Peptidase_S8 275 aallntAqdl.....g 285
                   ++l  tA +      +
    KIR63458.1 794 RILRDTAVPAgatyaS 809
                   *******887555440 PP

>> DUF2079  Predicted membrane protein (DUF2079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   4.8   9.9e-05      0.59     238     332 ..      49     140 ..      33     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 9.9e-05
     DUF2079 238 pegdklkyllllflplgflpllsspawLlvalPllllnllsgyspqlslgyqYsllvipflvlaaifglaklsssvelrrikriwsvalvlvlvl 332
                 +  d++  ++ l   + ++p++++ ++Ll+a+P lll+ll  +++++++g    + ++  l+l+a++gl++l   +  + +  +  +a++l++vl
  KIR63458.1  49 WLADQVRLATGLDRVVWLWPVVAAVTVLLAAVPALLLALLPRSGAVRATGR---AWLAGLLALGALTGLRALPPVHHEAYLAALAATAVLLAVVL 140
                 5556777777777788899*************************8888885...778999*************6666665555555555555544 PP

>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   5.0   0.00025       1.5     103     176 ..     149     238 ..     140     250 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00025
     DUF2076 103 pqpspqarpaapagqalgqeeqyaaqpgyaqqqaqpqygqpaaapq.............p....ggGggFLggAlqtAAGVaGGvllangl 176
                 p+p+p+++p  pa+++ + +++ a   g a +++ p+  ++a+a+              p    g+ gg L++ l++AA  a Gvl++  l
  KIR63458.1 149 PAPAPAPAPTPPAANPDRPHDPDAP-AGPAAPAGSPRTVPAAQAAVtwlavaaglatllPwawfGALGGLLETGLAAAAAAAVGVLAGALL 238
                 3444444444444443333322222.22222355555444444333777777777766615566666799999888888777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 5682.66
//
Query:       KIR63459.1  [L=212]
Description: metal-dependent phosphohydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.062   13.5   0.3        0.1   12.9   0.3    1.5  1  HD        HD domain


Domain annotation for each model (and alignments):
>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   5.6e-06       0.1       4      89 ..      43     117 ..      25     154 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.6e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHTTC CS
          HD   4 HsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgld...ledvaklirehh 89 
                 H  +V+ +   +a      + ++l++laa +HD + +p                a+e  +a +++ +++ lg++   + +v +l++   
  KIR63459.1  43 HLTAVLDVVDAYAGF---ADRPDLVRLAAWCHDAVYDPRAA-----------GDANERASADLAEGLLGGLGVPaaaVAEVRRLVLLTA 117
                 555555555555543...4699****************443...........3468999999999999888887777666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1532.50
//
Query:       KIR63460.1  [L=424]
Description: cysteine desulfurase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-72  244.1   0.0    1.6e-71  241.2   0.0    1.9  1  Aminotran_5    Aminotransferase class-V
     0.0057   15.9   0.0       0.06   12.5   0.0    2.0  2  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.2   0.0   1.8e-75   1.6e-71       2     371 .]      23     416 ..      22     416 .. 0.91

  Alignments for each domain:
  == domain 1  score: 241.2 bits;  conditional E-value: 1.8e-75
                  EEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHG CS
  Aminotran_5   2 yldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehh 99 
                   ld aA+++  +++ da++e    ++a+vhr+++ l+ + t a+e ar++v ++++a+  + +ift++tt+a+nl a++l     +g+++v+ + ehh
   KIR63460.1  23 NLDHAASAPCARAAADAVAEL-LPWYASVHRGAGALSRRCTLAYERARQTVGDFFGARPGDHVIFTRNTTDALNLLARAL----PAGTTVVTFAGEHH 115
                  59****************999.66******************************************************99....89************ PP

                  GGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH-.................-TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTT CS
  Aminotran_5 100 anlvpwqelakrtgakvkvipldeegeldldelekll.................nektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqav 180
                  anl+pw + + r    + v     e    ld++ + l                 +  + lva+t +snvtG   pv+e++++a+++ a ++vDaaq +
   KIR63460.1 116 ANLLPWPRGSVR----LPVPASPGEAVRALDAALTELrrdatpgaggaaggarpAGPPVLVAVTGASNVTGERWPVAELAAVARRHAARIAVDAAQLA 209
                  ******998844....4333333333444444444444566899999999998778899*************************************** PP

                  TTS---HHHHTESEEEEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEE.ET.TEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHH CS
  Aminotran_5 181 ghipidvkklgvDflafsghKllgPtGiGvlyvrkellekleplllggemveev.sl.eettfaeapskfeaGTpnvagiiglgaaleyleeigleai 276
                  +h+p+dv++lgvD la+sghKl++P G Gvl +r   l +++p l gg+  ++v +  ++  +a  p + eaGTpn  g+++l+a+   l++ + +a 
   KIR63460.1 210 PHAPVDVAALGVDYLAVSGHKLYAPFGAGVLLGRGCWLDAAPPYLAGGGATSHVgDAtHQVRWAAGPARHEAGTPNLLGAVALAAVCAALADADRDAL 307
                  *******************************************9988887776625589999************************************ PP

                  HHHHHHHHHHHHHHHCTSTTE...EEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHT.TEEEEEE-TTTHHHHHHTT.S............-EEEEE CS
  Aminotran_5 277 ekhekelaeyllerlkslpgv...rlygpdkaerrasivsfnfkgvhaedvatlLdee.gIavrsGhhcaqplmkrlale............gtvRaS 358
                  +++e++l ++l+++l++lp+v   r++gp  +  r +ivsf+++g ++ +va  L+ + ++ vr G  ca+pl +rl  e             ++RaS
   KIR63460.1 308 HAREQALLARLRQGLAALPHVvelRTFGP--DAPRVGIVSFVVAGRDSGEVAAELAARhDVGVRDGLFCAHPLARRLLAEaaarsgrtdlppTALRAS 403
                  ******************98732245565..799*****************************************9999999**************** PP

                  --TTS-HHHHHHH CS
  Aminotran_5 359 lyiynteeevdrl 371
                  l++ +t+ +vdrl
   KIR63460.1 404 LGLGSTARDVDRL 416
                  ***********98 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   6.7e-06      0.06      48     189 ..      67     206 ..      22     206 .. 0.85
   2 ?    1.3   0.0     0.017   1.5e+02     255     333 ..     290     369 ..     270     420 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.7e-06
                    HHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSE.EEEEEBEETTTTEE-HHHHHHHHTTH CS
  Aminotran_1_2  48 eleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsgge.vvryplyseedfhldlealeealkea 142
                     +++++ +f+g        + + v+++  ++ ++++l+++l   +g+ ++ ++  +  + n l + +g    ++p    ++ +  + al++al+e+
     KIR63460.1  67 RARQTVGDFFG------ARPGDHVIFTRNTTDALNLLARALP--AGTTVVTFAGEH--HANLLPWPRGSvRLPVP----ASPGEAVRALDAALTEL 148
                    56788888999......7788899999999999999999997..999999999976..89999999988566888....55666778888888887 PP

                    HCTTE..............TEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEET CS
  Aminotran_1_2 143 pegnk..............ktkvilvesphNPtGtvatleeleklldlakkynlllfvDea 189
                      +                ++ +++v++++N tG  ++ +el ++   a+++ +++ vD a
     KIR63460.1 149 RRDATpgaggaaggarpagPPVLVAVTGASNVTGERWPVAELAAV---ARRHAARIAVDAA 206
                    766668889************************************...*******999976 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.017
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS....TEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEE CS
  Aminotran_1_2 255 llqaavaaalsdallkqseleemrqrlqkrrkelrdeLael....glkvlasqsgmflltdlsaetakelskkLleevgvyvt 333
                    ++ aav aal da++    l+++ q l +r ++  ++L +      +   a+  g++++++  +    e++ +L+ ++ v v+
     KIR63460.1 290 VALAAVCAALADADRD--ALHAREQALLARLRQGLAALPHVvelrTFGPDAPRVGIVSFVVAGRD-SGEVAAELAARHDVGVR 369
                    4445555666666643..66666666666655555555444855555555555667777666666.34444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3021.51
//
Query:       KIR63461.1  [L=458]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-47  159.3  13.8    7.8e-47  159.3  13.8    1.8  2  PrsW-protease  PrsW family intramembrane metalloprotease


Domain annotation for each model (and alignments):
>> PrsW-protease  PrsW family intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.4      0.12   2.2e+03     153     178 ..      13      39 ..       4      59 .. 0.46
   2 !  159.3  13.8   4.3e-51   7.8e-47       1     195 [.      68     270 ..      68     272 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.12
  PrsW-protease 153 vqilllglllavllHalwNllasl.ae 178
                    v++l++ l++a ++  l+ l + l a+
     KIR63461.1  13 VLALVVLLIAACAVYMLFVLGSNLgAQ 39 
                    334444444444444444444444222 PP

  == domain 2  score: 159.3 bits;  conditional E-value: 4.3e-51
  PrsW-protease   1 eplwlllaaflwgalvavllalllntvlqallraelgkfiaeflaaflvaglvEEllKalgvllllllrrrefdepldGivygaavglGFavlEnl 96 
                    epl++l+++f+wga+v++ ++l++n+++ a +    ++   ++l+ +lva+++EEl+Kalg +lll++rrre+ +++dG+vy+ ++++GFa++En+
     KIR63461.1  68 EPLKYLIFCFAWGAFVSTAASLTVNEFFAARF---ADWGLPNALTGVLVAPFIEELTKALGPILLLIFRRREWSGITDGLVYCGLSAVGFAMVENI 160
                    79***************************877...8999999****************************************************** PP

  PrsW-protease  97 lYyvqalpsaane......gqlgglqllilRillsvagHalftallGiglglaksrrraarrvqilllglllavllHalwNllasl.aelllav.. 183
                    lY++    +++ +      g+ ++++++i+Rill  ++H+lft+++G+glg+a+++++++ r++++l+gllla++lH++wNll sl ++ + a+  
     KIR63461.1 161 LYLGGYGYASGVDeygpatGARQVIAIFIVRILLFGFAHPLFTSMTGVGLGIAARTADRRVRFLAPLAGLLLAMMLHGTWNLLPSLaQATGQAMia 256
                    ***8766555555688889999********************************99999*************************996665555557 PP

  PrsW-protease 184 ..vgvllyvplvaa 195
                       ++ ++vp+++a
     KIR63461.1 257 lyGYLGVMVPIFFA 270
                    77666777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.52
# Mc/sec: 2672.82
//
Query:       KIR63462.1  [L=303]
Description: hypothetical protein TK50_17880 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-63  212.9   0.0    5.6e-63  212.5   0.0    1.1  1  PPK2      Polyphosphate kinase 2 (PPK2)


Domain annotation for each model (and alignments):
>> PPK2  Polyphosphate kinase 2 (PPK2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.5   0.0   3.1e-67   5.6e-63      30     221 ..      88     279 ..      82     284 .. 0.97

  Alignments for each domain:
  == domain 1  score: 212.5 bits;  conditional E-value: 3.1e-67
                 -EEEEEEEESTTS-HHHHHHHHHTTS-GGG-EEEE--S--HHHHTS-TTHHHHTT---TT-EEEEES-GGGGGTHHHHHTSS-HHHHHHHHHHHHHHHH CS
        PPK2  30 kklvvifegrDaAGKgGaikrvtealnprvarvvalkaPteeEksqwylqRyvehlPakgeivlFdRswYnragvervmgfctdkeaerflreipefEr 128
                 +++++++++ D  GK+G+i+rv +a+np + ++ ++  Pte+E+ +++l+R+ + lP+ g++++F+Rs Y+++++ rv+ ++ +++++ +++ei++fEr
  KIR63462.1  88 DRVLLVLQAMDCGGKDGTIRRVAGAMNPLGLHIRSFGPPTERERRHDFLWRIRRALPPPGYVGVFNRSHYEDVLIARVESLVPEATWRARYDEINAFER 186
                 689************************************************************************************************ PP

                 HHHHTTEEEEEEEEE--HHHHHHHHHHHHHSS-CCC---CCCCCHHHCHHHHHHHHHHHHHHH--SSS-EEEEE-SSHHHHHHHHHHHHHHHH CS
        PPK2 129 mlvesgillvKfwlsiskeeqleRfkeRredPlkqwKlsplDlksrekWddytkakeemlartdteeaPWivveaddKkrarlnvirtllkal 221
                 +l+ sg++lvK+ l+is++eq eR+ +R +dP+k+wK  p Dl sr +W dy++a+ e+l r  t+ aPW vv+ad+K++++ +v + l ++ 
  KIR63462.1 187 ELTGSGVRLVKVMLHISHAEQGERLLARLTDPTKHWKYHPSDLDSRARWGDYQAAYAEALSRCGTDAAPWHVVPADRKWYRDWAVAHLLRETF 279
                 ***********************************************************************************9999776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2150.84
//
Query:       KIR63463.1  [L=387]
Description: family 2 glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-18   67.0   1.9      3e-18   66.5   1.9    1.1  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    3.5e-15   56.2   0.1    5.9e-15   55.5   0.1    1.4  1  Glycos_transf_2  Glycosyl transferase family 2
    6.7e-13   49.0   5.9    9.6e-13   48.5   5.9    1.3  1  Glyco_trans_2_3  Glycosyl transferase family group 2
    1.2e-07   31.3   0.0    2.8e-07   30.2   0.0    1.5  1  Glyco_transf_21  Glycosyl transferase family 21
  ------ inclusion threshold ------
       0.13   12.1   0.2       0.49   10.3   0.1    1.8  2  SIS              SIS domain


Domain annotation for each model (and alignments):
>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   1.9   8.4e-22     3e-18       1     230 []      37     261 ..      37     261 .. 0.82

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 8.4e-22
  Glyco_tranf_2_3   1 prdlavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealra....vksdl 90 
                      p+++a+++++ n ++++   ++++ a      +v+vv d s+++t+++a e+       +  v+  ++n g   k  al  ++ +    ++++ 
       KIR63463.1  37 PDEVAIMIACRNGAATIAGAVRAARA---TGARVYVVSDASTDATAREAAEA-------GAEVLELTDNVG---KPAALHAGYVRfglgTAYRA 117
                      6789*********9999999999888...689************99988773.......445666778776...66766677766455566*** PP

  Glyco_tranf_2_3  91 vllvDdDtvvePdtlkrllqffltpkvgavg.tpv.fllnrstlvsalgalefaerhlrflaar..ralgv.ltlnGsgslirrevlkelegld 179
                      v+++DdD++v Pd++ ++l+ + t++v++v   +v ++  ++++ + l +  +  ++ +  ++r    ++v  +++Gs s +r+e+l+ l +++
       KIR63463.1 118 VAILDDDVLVAPDFVTAALAHL-TERVAIVVgHNVtWWPPERRWNPWLAKRAYSYWNYQAVVRRiqSHFNVmNCISGSNSIYRTELLDVL-LPQ 209
                      **************99999998.*****998355534445666655558888999999888777546667768999**************.444 PP

  Glyco_tranf_2_3 180 plflltdDyelglrlrrag.frtayvpgaavrevfpsslkayikqrnRwvyg 230
                       + +++dD    l+  r+g +r++y+p+a+   ++p++  + +kq+ Rw++g
       KIR63463.1 210 QPPYIVDDTYWVLETHRRGlGRVVYAPRATALLQDPTNGRDWYKQNLRWLWG 261
                      46***************9945999**************************97 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.1   1.6e-18   5.9e-15       2     167 ..      42     204 ..      41     207 .. 0.84

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 1.6e-18
                      EEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH.--SS...EEEEEESSEE CS
  Glycos_transf_2   2 vviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglra.atgd...yilflDaDde 91 
                      + i + N ++t++ ++++++a       +++vv D+StD t+  + e+     +  v+ ++ nvGk +al ag  +   g     +++lD+D+ 
       KIR63463.1  42 IMIACRNGAATIAGAVRAARAT----GARVYVVSDASTDATAREAAEA-----GAEVLELTDNVGKPAALHAGYVRfGLGTayrAVAILDDDVL 126
                      78999999**************....**********************.....9*******************65515555889********** PP

                      E-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS....EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHH CS
  Glycos_transf_2  92 pdpdwleklvealekdgadvvlgqrprifgetdeiernkrv....generlyfkerkrslkgnlsfeigsaallrreale 167
                      ++pd++   +++l + ++++v+g+ +     +++++ ++      ++++     +r +s +  + +++gs++++r e+l+
       KIR63463.1 127 VAPDFVTAALAHLTE-RVAIVVGHNVTWWPPERRWN-PWLAkraySYWNYQAVVRRIQSHFNVMNCISGSNSIYRTELLD 204
                      ***************.77777765443322222222.2222346789******************************996 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   5.9   2.7e-16   9.6e-13       2     182 ..     118     314 ..     117     358 .. 0.68

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 2.7e-16
  Glyco_trans_2_3   2 illlDaDtvlppdclreiaaelaspevaivqgpvlvm.....nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevggw 90 
                      +++lD+D ++ pd++  ++a+l++ +vaiv g+ + +     ++++wl++ a + ++   +  ++ ++ +  +  + Gs+++ r ++l+ + + 
       KIR63463.1 118 VAILDDDVLVAPDFVTAALAHLTE-RVAIVVGHNVTWwpperRWNPWLAKRAYSYWN-YQAVVRRIQSHFNVMNCISGSNSIYRTELLDVLLPQ 209
                      789*******************97.8**99977664335454667777666666665.4455566667777777788*********99999888 PP

  Glyco_trans_2_3  91 dgdessvsEDfdmglrlqrkG.yrvrfvpeslvkekspltlraalrQrkRwayGc...eleklil..............lvrll.gylgsllws 165
                      +  +  + +D+++ l   r+G  rv+++p +    + p + r++++Q  Rw++G          +              +v l+ ++l  +l +
       KIR63463.1 210 Q--PPYIVDDTYWVLETHRRGlGRVVYAPRATALLQDPTNGRDWYKQNLRWLWGTfqgI-----IghsvgrrntrfdyaYVLLMaHWLLYVLGA 296
                      8..9*****************99********889999999**************75431.....133222222223332111111222222222 PP

  Glyco_trans_2_3 166 alplhlallllfslla..........l 182
                      +l l+l                    l
       KIR63463.1 297 PLTLWL---------LatagpglgtgL 314
                      222222.........112222233331 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   7.7e-11   2.8e-07      30     171 ..     114     258 ..      98     259 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 7.7e-11
  Glyco_transf_21  30 kydllvisDsdvrvkpdyLeellaaledpkvglVtslpv.gsdakg....laaaleaafl..ntlagvlqaklsglgfavGksmalrreaLeai 116
                       y+ + i+D+dv+v+pd+++  la+l++ +v++V++  v   +++     + a+ +  +   +++ +++q+++  ++++ G+  ++r+e L+ +
       KIR63463.1 114 AYRAVAILDDDVLVAPDFVTAALAHLTE-RVAIVVGHNVtWWPPERrwnpWLAKRAYSYWnyQAVVRRIQSHFNVMNCISGSNSIYRTELLDVL 206
                      68999**********************7.9***99988845666663444555555555565688999999999*******************9 PP

  Glyco_transf_21 117 GGfealadeLAeDyalgkllraaGl.kvvlspapiaqtsvprrsslrallaRqlrW 171
                         ++   ++ +D+      +++Gl +vv +p++  +  +++ +  r+++++ lrW
       KIR63463.1 207 LPQQP--PYIVDDTYWVLETHRRGLgRVVYAPRA--TALLQDPTNGRDWYKQNLRW 258
                      55555..9**************997478888876..345666677899*******9 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00014      0.49      50      98 ..      34      82 ..      29      97 .. 0.91
   2 ?    6.1   0.0    0.0026       9.5      67      98 ..      73     104 ..      71     107 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
                G-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS CS
         SIS 50 lideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplarea 98
                ++ +d + i+i+ ++ ++  + a++ a++ ga++ ++ d ++++ area
  KIR63463.1 34 PVAPDEVAIMIACRNGAATIAGAVRAARATGARVYVVSDASTDATAREA 82
                57899*******9999999999999***********************9 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0026
                 HHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS CS
         SIS  67 kdlvaaaelakergakiiaITdskgsplarea 98 
                 ++++a+a++a+e ga+++ +Td+ g p+a +a
  KIR63463.1  73 ASTDATAREAAEAGAEVLELTDNVGKPAALHA 104
                 68999**********************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2557.82
//
Query:       KIR63464.1  [L=34]
Description: multidrug MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.044   13.7   1.1      0.046   13.7   1.1    1.1  1  Gram_pos_anchor  LPXTG cell wall anchor motif


Domain annotation for each model (and alignments):
>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.1   2.5e-06     0.046      15      35 ..       5      26 ..       4      31 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.5e-06
                     XXXXXXXXXXXXXXXXXXXX.X CS
  Gram_pos_anchor 15 ngnifltaaGllallggllL.l 35
                      g  +l++aGl al+ggl+  +
       KIR63464.1  5 IGFVSLLVAGLGALAGGLVYvA 26
                     67889*************9744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 263.68
//
Query:       KIR63465.1  [L=284]
Description: aminotransferase IV [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-45  154.3   0.0    5.1e-45  154.0   0.0    1.0  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.0   0.0   2.9e-49   5.1e-45       1     221 [.      36     260 ..      36     262 .. 0.90

  Alignments for each domain:
  == domain 1  score: 154.0 bits;  conditional E-value: 2.9e-49
  Aminotran_4   1 glfEtmrvyngeiffldeHleRLrksaellglelpfdeeelrkileelleannsen...grlrllvsrgggglgaatsepsvavyvsalppgpeseke 95 
                  glfEtm+v+ g++++ deHl+RL+++a+++  +lp++  ++  +l e + ++++ +   g lrl+ +rg++g g     ps++ +++  p ++ +++ 
   KIR63465.1  36 GLFETMHVRGGRPWLRDEHLARLARGAARI--DLPLPPAGVLVELLEEV-CAGWPVdaeGALRLVCTRGPEGGG----PPSAHATLARVPAAARRARL 126
                  89****************************..99999988877777744.55555567999*********7666....77777777777777777777 PP

  Aminotran_4  96 .......lplvtssdvrrdapsplpgaKtlnyldnvlarreakergadevllvdedgnvtEgstsNvfivkggelitP.plssgiLpGitrrallela 185
                         lpl++++  r    +   g+K+++y+ +++arr+a+ +g+d+vl+v++dg+ +Eg t+Nv++  g +l+t   +++giLpG+t ++ll +a
   KIR63465.1 127 egisvatLPLGVAATARPALGWLPVGIKSTSYAVSAAARRWAAGHGVDDVLWVSTDGYALEGPTANVVWLAGRTLCTVpAAATGILPGVTAAWLLGHA 224
                  77779*********999999*********************************************************8466777************** PP

  Aminotran_4 186 kalgleveereitlkdleeadeafltntlrgvlpvr 221
                  ++lgl+ eer +t++ l++ad++++t++lrg+ pv+
   KIR63465.1 225 ADLGLTAEERMVTPAGLRAADGVWFTSSLRGLAPVH 260
                  ***********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      153  (0.00853366); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2111.19
//
Query:       KIR63466.1  [L=260]
Description: methylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1807.94
//
Query:       KIR63467.1  [L=254]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-50  168.9   3.1    1.2e-49  168.5   3.1    1.1  1  adh_short        short chain dehydrogenase
    1.3e-34  119.8   5.8    1.7e-34  119.4   5.8    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    2.3e-14   53.7   2.4      3e-14   53.3   2.4    1.1  1  KR               KR domain
    5.8e-05   23.1   5.7    5.8e-05   23.1   5.7    1.7  2  NAD_binding_10   NAD(P)H-binding
    0.00017   21.2   1.8    0.00036   20.1   0.5    2.2  2  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.065   13.1   0.1       0.12   12.2   0.1    1.4  1  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
          2    9.4   6.9        5.7    8.0   4.0    2.7  2  LytR_C           LytR cell envelope-related transcriptional a


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.5   3.1   4.5e-53   1.2e-49       2     185 ..       4     188 ..       3     194 .. 0.98

  Alignments for each domain:
  == domain 1  score: 168.5 bits;  conditional E-value: 4.5e-53
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCSHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfselsee 99 
                 v++vtGassGIG a+a++la+eG++v++++r+ ++l+++++e++++g +a a+++Dvt++e+v  l ++a++  g++ +LvnNAG   g  p+++ s  
  KIR63467.1   4 VAIVTGASSGIGAATARRLAAEGFHVLAAARRTDRLAALVAEIGAAGGSAAAVECDVTSAESVAGLAAAAAAAPGPVTLLVNNAGGaRGLDPVESGSVG 102
                 89************************************************************************************88999******** PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTd 185
                 +w+ +++vN+ g++ +t+a+lpa+ ++ +G+Iv vsS+ag+v ++g+  YsA+K+a ++ + +l+ el  + +rv+ + PG+v+Td
  KIR63467.1 103 DWQWMYDVNVLGTLRVTQALLPALEASGAGTIVIVSSTAGHVVYEGGGGYSAAKHAQTAVAGTLRLELCGRPVRVIEIDPGMVKTD 188
                 *************************************************************************************8 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   5.8   6.5e-38   1.7e-34       1     215 [.       9     226 ..       9     233 .. 0.94

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 6.5e-38
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga sgIG+a+A++la+eG +v+++ ++ ++ ++ v+e+ +++g++ ++ecDVt+ e+v+ l++++++  g +  lvnnag a+    p+++ s  ++
    KIR63467.1   9 GASSGIGAATARRLAAEGFHVLAAARRTDRlAALVAEIGAAGGSAaAVECDVTSAESVAGLAAAAAAAPGPVTLLVNNAGGARG-LDPVESGSVGDW 104
                   899******************9999999998***********98845************************************9.9999******** PP

                   HHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHH CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelle 190
                   + + dvn+ +++++++a+lp+++++  g iv +ss+++++v ++   y+aaK+a  a++ +l  el  + +Rv  + pg++kT+  + ++   +  +
    KIR63467.1 105 QWMYDVNVLGTLRVTQALLPALEASgaGTIVIVSSTAGHVVYEGGGGYSAAKHAQTAVAGTLRLELCGRPVRVIEIDPGMVKTDEFALVRFGGDADR 201
                   ********************77665599*********************************************************999998888888 PP

                   HHHHHSTTSS-B-HHHHHHHHHHHC CS
  adh_short_C2 191 elearaplgrlgtpeevaeaalfLa 215
                   + +  a + +   +e+va+++++ a
    KIR63467.1 202 ADAVYAGVAEPLVAEDVADCVAWCA 226
                   8889999999999999999999865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   2.4   1.2e-17     3e-14       2     164 ..       4     167 ..       3     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1.2e-17
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------.---TTT CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr.dkllee 99 
                 + ++tG+  g+G ++ar la++g + l+   R+    ++ +al+ae+ a g +  +v++Dv+++++v+ l +++ a  +p++  ++ Ag +r  +++e+
  KIR63467.1   4 VAIVTGASSGIGAATARRLAAEGFHVLAAARRT----DRLAALVAEIGAAGGSAAAVECDVTSAESVAGLAAAAAAAPGPVTLLVNNAGGARgLDPVES 98 
                 569********************9776665555....56667********************************************999888589**** PP

                 --HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHH CS
          KR 100 mtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrr 164
                  +  d++ ++   v G+  + ++l +    +    +v++SS ag +   g + Y+aa + + a+a + r
  KIR63467.1  99 GSVGDWQWMYDVNVLGTLRVTQALLPaleaSGAGTIVIVSSTAGHVVYEGGGGYSAAKHAQTAVAGTLR 167
                 *****************999998877666588899**************************99997665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   5.7   2.3e-08   5.8e-05       1      99 [.       9     140 ..       9     169 .. 0.74
   2 ?   -1.7   0.1      0.88   2.3e+03     171     182 ..     216     227 ..     180     251 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2.3e-08
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH.....CTTTCEEEE--TT-CCHHHHHHTT-SE....EEES-...--TCC...HHHH... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele.....aeeglevvegdvtdvedlaealkgada....Vvsal...ggggk...deeg... 77 
                     GA+ ++G + +++l+a+ g++v a +R++++la+l      a   + +ve dvt++e++a   + a a    V   +   gg ++          
      KIR63467.1   9 GASSGIGAATARRLAAE-GFHVLAAARRTDRLAALVaeigaAGGSAAAVECDVTSAESVAGLAAAAAAapgpVTLLVnnaGGARGldpV--Esgs 100
                     9****************.5*************9765233333367889********999988875553222233322332332224551..1446 PP

                     ..................HHHHHHHHHHCT--EEEEEEET CS
  NAD_binding_10  78 ..................aknivdaakeagvkRfvlvsai 99 
                                       +++++ a++++g   +v+vs+ 
      KIR63467.1 101 vgdwqwmydvnvlgtlrvTQALLPALEASGAGTIVIVSST 140
                     677777777788899999*******************996 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.88
                     HHHHHHHHHHCT CS
  NAD_binding_10 171 adVAdvlvavld 182
                     +dVAd+++ +++
      KIR63467.1 216 EDVADCVAWCAT 227
                     444444444433 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.5   1.4e-07   0.00036       2      71 ..       6      83 ..       5     147 .. 0.63
   2 ?   -1.9   0.0       0.7   1.8e+03     215     238 ..     215     232 ..     211     236 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.4e-07
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHH..T-SEEEE- CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkee..qpdavihl 71
                +VtGa+  iG+a++++l+++g +v++ +r++++ +    +++         ve+d+t +++++ l +    +p  v +l
  KIR63467.1  6 IVTGASSGIGAATARRLAAEGFHVLAAARRTDRLAAL-VAEIgaaggsaAAVECDVTSAESVAGLAAAAaaAPGPVTLL 83
                8*****************************5544433.3333799***************9988776543344333333 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.7
                 HHHHHHHHHHHHHHHTT-STTEEE CS
   Epimerase 215 veDvaeaillvlehvdagdkgeiy 238
                 +eDva+++ + +++++      ++
  KIR63467.1 215 AEDVADCVAWCATRPQ------HV 232
                 79******99999944......44 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   4.8e-05      0.12       8      35 ..      13      39 ..      12      47 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.8e-05
  DNA_pol_lambd_f  8 GVGpktAkkwyakGirtledlrakrakL 35
                     G+G++tA+++ a+G+  l  +r+ +++L
       KIR63467.1 13 GIGAATARRLAAEGFHVLAAARR-TDRL 39
                     9****************999999.4555 PP

>> LytR_C  LytR cell envelope-related transcriptional attenuator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.0    0.0022       5.7       8      62 ..       8      60 ..       2      87 .. 0.52
   2 ?    1.0   0.0      0.35     9e+02      22      63 ..     125     167 ..     111     180 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0022
      LytR_C  8 NgtgvsGlAarvadaLeerGftvgevgnagnadee.ttivy..reaaaaaakalaaal 62
                 g++ sG+ a++a+ L+++Gf v +   a+ ++++    v+  ++a++ +a a++ ++
  KIR63467.1  8 TGAS-SGIGAATARRLAAEGFHVLA---AARRTDRlAALVAeiGAAGG-SAAAVECDV 60
                5555.9*****************99...44443334444443322222.222222222 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.35
      LytR_C  22 aLeerGf.tvgevgnagnadeettivyreaaa.aaak....alaaalg 63 
                 aLe+ G  t++ v+++        +vy+ +++  aak    a+a +l+
  KIR63467.1 125 ALEASGAgTIVIVSST-----AGHVVYEGGGGySAAKhaqtAVAGTLR 167
                 5566665566663333.....355888332234233323346666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 1728.65
//
Query:       KIR63468.1  [L=217]
Description: PhoU family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-31  108.8   8.8    7.8e-19   67.9   6.6    2.3  2  PhoU           PhoU domain
  ------ inclusion threshold ------
      0.056   12.2   0.8      0.067   12.0   0.8    1.1  1  ABC_ATPase     Predicted ATPase of the ABC class
      0.074   13.2   0.1       0.24   11.6   0.1    1.9  2  SpmSyn_N       S-adenosylmethionine decarboxylase N -terminal
       0.14   11.6   3.3       0.56    9.6   3.3    1.8  1  Peptidase_M75  Imelysin


Domain annotation for each model (and alignments):
>> PhoU  PhoU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   6.6   1.7e-22   7.8e-19       1      87 [.      16     102 ..      16     104 .. 0.97
   2 !   41.1   0.0   4.2e-14   1.9e-10       3      87 ..     123     202 ..     121     204 .. 0.87

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 1.7e-22
                 HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-SHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        PhoU   1 lrrmaeiveemlddalealeekdtelarevierddeidrlekeiersllealakrqplaedlrellsllriardlERigDhavniae 87 
                 l +mae ++ ++++a +al + d+ +a+ vierd eid+l++ +e+++  +la++ p+a+dlr+++++l++a dlER+gD a ++a+
  KIR63468.1  16 LVDMAEAIRAAMRQATRALLTADRQAAENVIERDAEIDELYRHVEERVCDLLARQAPVASDLRAMITALHVAADLERMGDLADHVAK 102
                 569*********************************************************************************998 PP

  == domain 2  score: 41.1 bits;  conditional E-value: 4.2e-14
                 HHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-SHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        PhoU   3 rmaeiveemlddalealeekdtelarevierddeidrlekeiersllealakrqplaedlrellsllriardlERigDhavniae 87 
                 +ma+i+  m ++  ++l+++d +la e+ ++dd +d+l+k +   ll     ++ +   +++++++  + r +ER +Dhavn  e
  KIR63468.1 123 DMASIADRMAEKIGSVLAKPDADLAAELDRDDDAMDDLHKSLFGVLL-----GDDWPYGVETAIDATLLGRFYERFADHAVNAGE 202
                 8***************************************9855533.....3334345999********************877 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8   1.5e-05     0.067     329     409 ..      19     101 ..      17     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH-..-EEEEEESS-GCCTTT-SEEE CS
  ABC_ATPase 329 qAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklg..vstilvvggsgdyldvAdtvi 409
                 +A +i  a++  +++lL    ++A N + rD+ ++el+ + +e +  l+ r + + ++l   ++ + v+  ++ + d+Ad+v 
  KIR63468.1  19 MAEAIRAAMRQATRALLTADRQAAENVIERDAEIDELYRHVEERVCDLLARQAPVASDLRamITALHVAADLERMGDLADHVA 101
                 7999999**************************************99999988887775422778888888888888888884 PP

>> SpmSyn_N  S-adenosylmethionine decarboxylase N -terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   5.4e-05      0.24      39      92 ..      25      79 ..      17      83 .. 0.83
   2 ?   -0.9   0.0      0.44     2e+03      49      54 ..     120     125 ..      72     150 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.4e-05
    SpmSyn_N 39 aslriyphGlvlldlqsyeedekaq.evdkllnkveerlkellegsikrvkrlPa 92
                a++r  +  l++ d q+ e+  +   e+d+l  +veer+ +ll +++  +  l a
  KIR63468.1 25 AAMRQATRALLTADRQAAENVIERDaEIDELYRHVEERVCDLLARQAPVASDLRA 79
                678888999*********998776669**************99987766666655 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.44
    SpmSyn_N  49 vlldlq 54 
                 v +d+ 
  KIR63468.1 120 VFVDMA 125
                 334444 PP

>> Peptidase_M75  Imelysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.3   0.00012      0.56     122     253 ..       3     160 ..       1     184 [. 0.70

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00012
                    S..HHHHHHHHHHHHHHHHHHHHHHHT...CHHHHHCCH..................................SHHHHHHHHHCCHHHHHHHHHH. CS
  Peptidase_M75 122 tdyleylkavaallvsdlqelaaawqpetegnyraalta..................................sekealeeilngmgslldelas. 182
                    +++++ l+ v++llv+ +++++aa +++t    ra+lta                                       ++  l +m++ l   a+ 
     KIR63468.1   3 DEFRADLQIVSQLLVDMAEAIRAAMRQAT----RALLTAdrqaaenvierdaeidelyrhveervcdllarqaP----VASDLRAMITALHVAADl 90 
                    567999********************665....56666544445555656666777777777777777744332....333333333333333332 PP

                    CTTHHHH...TSCHHCHSTTTTTT-HHHHHHHHHHHHHHHHCTS.SCCHHHHHCCCSCHHHHHHHHHHHHHHHH CS
  Peptidase_M75 183 erikvpl...sapdpedeedcfsdnsladiqanleGirnvylgesgaslrdlveaadpalaeqldaalaaleaa 253
                    er+++      +   +++ ++     l+ +  ++ +i + +     +++ +++++ d++la++ld++ +a+++ 
     KIR63468.1  91 ERMGDLAdhvAKTALRRHPSPAVPAELRPVFVDMASIADRM----AEKIGSVLAKPDADLAAELDRDDDAMDDL 160
                    33332222335555569999999999999999999999999....79999999999999999999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 1461.86
//
Query:       KIR63469.1  [L=262]
Description: hypothetical protein TK50_18190 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-17   61.9   1.4    1.3e-16   60.6   0.4    2.0  2  AP_endonuc_2  Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
      0.044   13.5   0.0      0.091   12.5   0.0    1.5  1  GDPD          Glycerophosphoryl diester phosphodiesterase fam


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.4   1.5e-20   1.3e-16       1     208 [.      17     204 ..      17     205 .. 0.87
   2 ?   -2.9   0.0      0.42   3.8e+03      98     113 ..     232     247 ..     216     253 .. 0.48

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 1.5e-20
                   HHHHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCT CS
  AP_endonuc_2   1 laaaaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllvlhpGtagag 97 
                   +++aa++G+dg+E+  +++         ++ +lr +++ +g+ + s++++       +           ++l+ra+ela  L ap++v+hp      
    KIR63469.1  17 FQLAAALGYDGIEVMVWTDAVSQ-----DAGALRGLAAHYGVPVLSVHAPCLLVTQRVW-SPDP----WERLRRAAELADTLEAPTVVVHPP----- 98 
                   689*************9987776.....69*************9999988777775553.4445....8*********************55..... PP

                   TTSGHH.HHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTCHHHHHHHHHHTTTT...EEEEEEHHHHHHHTTTHHHHHHHHHGGEEEEEE.E CS
  AP_endonuc_2  98 pkgsee.eawerlaeslneladyaekegvklalEtlagsgvelgdeelarlldavdspn...vgvclDtgHlliaeedvddalraladrikhvHikD 190
                      +++ +  +++a++l+e+a  +   g ++a+E++ +  +  g ++++      d++       +lD +H+ + ++d  ++ +++++ ++hvH+ D
    KIR63469.1  99 --FTWQrDYARTFADGLDEVAGRFT--GLRFAVENMYPVRM-AG-RQFVPYAPGWDPTEtgyPSYTLDLSHCAASHTDALAMADRMGSGLAHVHLGD 189
                   ..67763455789**********86..*************8.44.78888898998888333447******************************99 PP

                   ESSTTTTSSTTEESTTSS CS
  AP_endonuc_2 191 akgdlgagrdrhvpigeG 208
                   + g    grd+h+ +g G
    KIR63469.1 190 GTG---EGRDEHLVPGRG 204
                   999...9*********99 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.42
                   TTSGHHHHHHHHHHHH CS
  AP_endonuc_2  98 pkgseeeawerlaesl 113
                   + +s++++ + l+e+l
    KIR63469.1 232 GAKSRAVREADLREAL 247
                   3333444444444433 PP

>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     1e-05     0.091       7      29 ..       8      30 ..       5      34 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1e-05
                TSSTTSHHHHHHHHHTT-SEEEE CS
        GDPD  7 nlpEnTlesfakAaelGadyiEf 29
                 +pE T ++f+ Aa+lG+d iE+
  KIR63469.1  8 VFPERTAAAFQLAAALGYDGIEV 30
                589*******************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2015.00
//
Query:       KIR63470.1  [L=84]
Description: hypothetical protein TK50_18205 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      166  (0.00925874); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 650.90
//
Query:       KIR63471.1  [L=69]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-13   50.4   0.0    2.2e-13   50.1   0.0    1.1  1  HTH_17        Helix-turn-helix domain
      0.001   18.8   0.1     0.0042   16.9   0.1    1.8  2  HTH_23        Homeodomain-like domain
     0.0014   18.1   0.1      0.082   12.4   0.1    2.1  2  Sigma70_r4    Sigma-70, region 4
     0.0033   17.6   0.1     0.0049   17.0   0.1    1.3  1  AbiEi_4       Transcriptional regulator, AbiEi antitoxin
     0.0066   16.5   0.4      0.037   14.1   0.2    1.9  2  HTH_22        HTH domain
  ------ inclusion threshold ------
      0.039   13.8   0.1        3.5    7.6   0.1    2.0  2  TrmB          Sugar-specific transcriptional regulator TrmB
      0.053   13.6   0.1      0.067   13.2   0.1    1.3  1  HTH_29        Winged helix-turn helix
       0.06   12.8   0.5       0.14   11.6   0.3    1.7  2  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
       0.16   12.1   0.0       0.23   11.6   0.0    1.3  1  HTH_7         Helix-turn-helix domain of resolvase
       0.17   11.7   0.0       0.32   10.8   0.0    1.5  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   1.2e-16   2.2e-13       1      49 [.      15      63 ..      15      64 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 1.2e-16
      HTH_17  1 lltveEaAelLgvsrstvyrlirrgelpaakiGrrwriprsdleewlek 49
                +ltv+E+A   +vs+ tvyrl+++gel a+++Gr+ r+p+ ++ e+l++
  KIR63471.1 15 FLTVAEVATVMRVSKMTVYRLVHSGELTAVRVGRSFRVPEHAVHEYLRG 63
                69*********************************************86 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   2.3e-06    0.0042      18      39 ..      16      37 ..       9      38 .. 0.90
   2 ?   -0.2   0.0      0.54   9.8e+02      22      39 ..      45      62 ..      41      67 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.3e-06
      HTH_23 18 lsvreIAreLgvsrrTvyrwlk 39
                l+v+e+A+ + vs++Tvyr ++
  KIR63471.1 16 LTVAEVATVMRVSKMTVYRLVH 37
                699****************986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.54
      HTH_23 22 eIAreLgvsrrTvyrwlk 39
                ++ r + v+++ v  +l+
  KIR63471.1 45 RVGRSFRVPEHAVHEYLR 62
                567777888888876654 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   4.6e-05     0.082      21      42 ..      16      37 ..       9      40 .. 0.87
   2 ?    4.9   0.0      0.01        19      19      46 ..      39      66 ..      34      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.6e-05
                --HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4 21 lTleEIgerlgiSrerVrqiek 42
                lT +E++ ++ +S+++V ++ +
  KIR63471.1 16 LTVAEVATVMRVSKMTVYRLVH 37
                8****************98877 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.01
                TT--HHHHHHHHTS-HHHHHHHHHHHHH CS
  Sigma70_r4 19 eglTleEIgerlgiSrerVrqiekrAlr 46
                 +lT   +g+ + +++ +V+  ++ A++
  KIR63471.1 39 GELTAVRVGRSFRVPEHAVHEYLRGAFQ 66
                6899***************988887775 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   2.7e-06    0.0049      11      42 ..      13      45 ..       9      48 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.7e-06
     AbiEi_4 11 vGlfttrelea.aGispsalrrLvrkGwLvrlr 42
                v ++t++e++    +s ++++rLv++G+L+ +r
  KIR63471.1 13 VRFLTVAEVATvMRVSKMTVYRLVHSGELTAVR 45
                4689*************************9777 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   2.1e-05     0.037      44      60 ..      18      34 ..      16      36 .. 0.92
   2 ?    0.1   0.0      0.48   8.7e+02      46      63 .]      45      62 ..      42      62 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.1e-05
      HTH_22 44 vekvAekLgiSraTvYr 60
                v +vA  + +S+ TvYr
  KIR63471.1 18 VAEVATVMRVSKMTVYR 34
                899*************9 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.48
      HTH_22 46 kvAekLgiSraTvYryLr 63
                 v + + + ++ v  yLr
  KIR63471.1 45 RVGRSFRVPEHAVHEYLR 62
                577788899999999997 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0019       3.5      23      44 ..      16      37 ..      10      38 .. 0.90
   2 ?    7.2   0.0    0.0027       4.8      17      44 ..      35      62 ..      34      63 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0019
                CHHCHHCCCTTSSCHCHHHHHH CS
        TrmB 23 atadeiaeelgvprskvYevLr 44
                +t+ e+a    v++ +vY+ + 
  KIR63471.1 16 LTVAEVATVMRVSKMTVYRLVH 37
                699***************9876 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0027
                HHHHCCCHHCHHCCCTTSSCHCHHHHHH CS
        TrmB 17 LlklgpatadeiaeelgvprskvYevLr 44
                L+ +g++ta  + +   vp+  v e+Lr
  KIR63471.1 35 LVHSGELTAVRVGRSFRVPEHAVHEYLR 62
                899*********************9997 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.7e-05     0.067      14      35 ..      17      38 ..       6      51 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.7e-05
      HTH_29 14 tvsqiAkllglsrrtvyrwlkr 35
                tv+++A ++++s+ tvyr ++ 
  KIR63471.1 17 TVAEVATVMRVSKMTVYRLVHS 38
                9*****************9985 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   7.7e-05      0.14      28      49 ..      16      37 ..       8      39 .. 0.87
   2 ?   -0.6   0.0      0.51   9.1e+02      31      47 ..      44      60 ..      35      62 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.7e-05
  HTH_Tnp_ISL3 28 rsvkavArqlgvSwtTVwrild 49
                   +v++vA  ++vS  TV r ++
    KIR63471.1 16 LTVAEVATVMRVSKMTVYRLVH 37
                  59*****************987 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.51
  HTH_Tnp_ISL3 31 kavArqlgvSwtTVwri 47
                    v r ++v ++ V+ +
    KIR63471.1 44 VRVGRSFRVPEHAVHEY 60
                  56777888888888765 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00013      0.23      23      43 ..      17      37 ..      16      39 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
                -STTTSSSS---SSSS--SS- CS
       HTH_7 23 siskIAkevnisRsTvYRyla 43
                +++++A    +s++TvYR  +
  KIR63471.1 17 TVAEVATVMRVSKMTVYRLVH 37
                5788999999********876 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00018      0.32      21      42 ..      16      37 ..      10      39 .. 0.93
   2 ?   -3.1   0.0       3.9     7e+03      27      33 ..      43      49 ..      43      50 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
      HTH_38 21 lslreIArrLgrspsTIsRElk 42
                l+++e+A  + +s+ T++R ++
  KIR63471.1 16 LTVAEVATVMRVSKMTVYRLVH 37
                689****************997 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.9
      HTH_38 27 ArrLgrs 33
                A r+grs
  KIR63471.1 43 AVRVGRS 49
                6789998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 465.42
//
Query:       KIR63472.1  [L=357]
Description: NAD-dependent dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-20   71.3   0.0    1.4e-19   70.6   0.0    1.4  1  Epimerase      NAD dependent epimerase/dehydratase family
    5.6e-07   29.3   0.0    3.4e-06   26.7   0.0    2.1  2  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
     0.0022   17.1   0.0     0.0034   16.5   0.0    1.3  1  RmlD_sub_bind  RmlD substrate binding domain
     0.0036   16.3   0.0     0.0051   15.9   0.0    1.2  1  3Beta_HSD      3-beta hydroxysteroid dehydrogenase/isomerase 
  ------ inclusion threshold ------
      0.017   14.3   0.0      0.037   13.2   0.0    1.5  2  NAD_binding_4  Male sterility protein


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   3.8e-23   1.4e-19       1     241 []      13     242 ..      13     242 .. 0.88

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 3.8e-23
                 EEEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg.ye.vigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtln 97 
                 ++VtG++ ++G++++ +l++   +e vig+d    a n +    l+ ve   +d  +l  l+++ ++dav+hlA v  ++a+   ++++ e+n++gt++
  KIR63472.1  13 VVVTGINRYLGAHVAARLAADSrIErVIGVDPS--APNPEVAGLLDGVERIRLDLGSLGGLLADLDVDAVVHLALVTAPDAQQGGRSAMKEQNVIGTMQ 109
                 68*****************9999555*****99..666665555567777777777999**************99************************ PP

                 HHHHHHHH.TCTEEEEEEEGGGGTSCSSSS..BSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHH.T-EEEEEEESEEESTTS-TTSTTSHHHHHHH CS
   Epimerase  98 lleaarka.gvkrllflsSsevYGkdaeqp..keettltgpl.kpnspYaaaKlageklveayaaqy.glnaiilrlfnlyGprngegevsrvipalir 191
                 ll a+++a  +++l+  sS++ YG++ + p   +e+t  +p   p+  +++  l +e +v+ +++   ++ a++lr    +G       ++ +  ++ +
  KIR63472.1 110 LLAACQRApRLRKLVVRSSTAAYGASFRDPavFTEET--EPReVPRGGFGRDILDIEGYVRGFRRRRpDVTATVLRFAPFIGST----ADTTLTRYFSQ 202
                 ********9999************9999996655555..56678***********************9***************9....55555555555 PP

                 HHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 192 kilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                  +       t++g  +++ +f++ +D+ e++++ +++    ++++++n++
  KIR63472.1 203 PF-----VPTVFG-RDPRLQFVHFDDALEVLHRSVAE----EHPGTFNVA 242
                 54.....457888.9*****************99999....899999996 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   9.6e-10   3.4e-06       2     146 ..      15     147 ..      14     153 .. 0.74
   2 ?   -0.6   0.0       0.2     7e+02     222     260 ..     216     254 ..     205     262 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 9.6e-10
                    EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHHH CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPey 97 
                    +TGi+ + G+++a +L +       ++  + s    +++ l +          + ++ Dl    sl  lla+ ++d+v++LA   + d +     +
     KIR63472.1  15 VTGINRYLGAHVAARLAADSRI-ERVIGVDPSAPNPEVAGLLDGV--------ERIRLDL---GSLGGLLADLDVDAVVHLALVTAPDAQQGGRSA 98 
                    8888888888888888876433.3333333333335566665422........2344454...57999**************************** PP

                    HHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSS..B-TTS- CS
  GDP_Man_Dehyd  98 taevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevp..qtEttp 146
                    + e nv+Gt++LL a++++ +    +++  S+   YG   + p  +tE+t 
     KIR63472.1  99 MKEQNVIGTMQLLAACQRAPR--LRKLVVRSSTAAYGASFRDPavFTEETE 147
                    ****************99864..4589999999****99766633566654 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.2
                    EEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHH CS
  GDP_Man_Dehyd 222 dwghvkDyveamwlmlqqdkpedyviatgethsvrefve 260
                     + h +D  e++++ + +++p ++++a   + s+ + ++
     KIR63472.1 216 QFVHFDDALEVLHRSVAEEHPGTFNVAGPGVLSLSQAIR 254
                    577888888888888888888888888776666655544 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   9.5e-07    0.0034       4     149 ..      14     185 ..      12     200 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9.5e-07
                    EEESTTSHHHHHHHHHCTTTS..EEEEEE-TT.............T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHH CS
  RmlD_sub_bind   4 lvtGanGqlGseLakqlaeeg..levlaltre.............eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaeavea 84 
                    +vtG n  lG ++a++la++     v++++ +             e    d  ++  ll++ + d+vv++A  ta D+    + a  + n+ ++++
     KIR63472.1  14 VVTGINRYLGAHVAARLAADSriERVIGVDPSapnpevaglldgvERIRLDLGSLGGLLADLDVDAVVHLALVTAPDAQQGGRSAMKEQNVIGTMQ 109
                    566666666666666665533113455554445666666655555222345567778899*******************999************** PP

                    HHHHHHHCT..-EEEEEEEGGGS-S-TTS-..B-TTS---..-SSHHHHHHHHHHHHHHH.....H-SSEEEEEE- CS
  RmlD_sub_bind  85 lAeaaaavg..alLihvStDyVFdGekkrp..Yeeddets..PlnvYGrtKlaGEqavla.....agkkalivRts 149
                    l +a++++    +L+  S+   + ++  +p  ++e+ e+   P++ +Gr  l+ E  v+         +a+++R++
     KIR63472.1 110 LLAACQRAPrlRKLVVRSSTAAYGASFRDPavFTEETEPRevPRGGFGRDILDIEGYVRGfrrrrPDVTATVLRFA 185
                    *****99752256888888888988855552366665543337788888888888888764332223345666665 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-06    0.0051       1     138 [.      14     149 ..      14     154 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-06
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvag.kltedeimkvnvkGTrn 98 
                 vvtG   +lG+++  +L    +++  rv+ ++ s +  e +  ++  + i  D+ +   l + l +vd+v+hla ++     +  +  + + nv GT +
  KIR63472.1  14 VVTGINRYLGAHVAARLAADSRIE--RVIGVDPSAPNPEVAGLLDGVERIRLDLGSLGGLLADL-DVDAVVHLALVTAPDAqQGGRSAMKEQNVIGTMQ 109
                 577777777777777776666543..44444444444455555555556677777777776555.6999****9888766624456778899******* PP

   3Beta_HSD  99 vleacvka.gvrvlvYtSsaevvgpnslgeeilngdEeley 138
                 +l+ac +a  +r+lv  Ss  + g  ++  ++   +E++++
  KIR63472.1 110 LLAACQRApRLRKLVVRSSTAAYGASFRDPAVF-TEETEPR 149
                 *****987479*********9999965555555.7777665 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     1e-05     0.037      87     147 ..      76     141 ..      71     185 .. 0.78
   2 ?   -3.4   0.0       1.2   4.4e+03      93     123 ..     324     354 ..     321     356 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1e-05
                    H--EEEE--SS-S.ST...TSSEEHHHHHHHHHHHHHHHTSSS--..-EEEEEE.GGGTTS-TTT- CS
  NAD_binding_4  87 evdviihsaAtvnfde...pykellrvNveGtrevlelakklkkl.kvllhvST.ayvngeregev 147
                     vd+++h a  +  d+     + +++ Nv Gt ++l  +++  +l k+++  ST ay +  r  +v
     KIR63472.1  76 DVDAVVHLALVTAPDAqqgGRSAMKEQNVIGTMQLLAACQRAPRLrKLVVRSSTaAYGASFRDPAV 141
                    58889998877765552224577999**************98888567777788888777766554 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.2
                    E--SS-S.STTSSEEHHHHHHHHHHHHHHHT CS
  NAD_binding_4  93 hsaAtvnfdepykellrvNveGtrevlelak 123
                    h ++ v   e++  + r+ ++G+r+v   a+
     KIR63472.1 324 HQGGVVVTREQLAAAERAVLDGIRQVRAVAR 354
                    8899999999999999999999999987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2707.00
//
Query:       KIR63473.1  [L=285]
Description: hypothetical protein TK50_18250 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-17   61.9   0.0    7.4e-17   61.2   0.0    1.3  1  Acyltransferase  Acyltransferase
    0.00026   20.0   0.0    0.00033   19.7   0.0    1.1  1  DAGAT            Diacylglycerol acyltransferase
  ------ inclusion threshold ------
       0.12   12.9   0.3       0.12   12.9   0.3    1.9  2  Optomotor-blind  Optomotor-blind protein N-terminal region


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   1.2e-20   7.4e-17       2     134 ..      58     188 ..      57     189 .. 0.90

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 1.2e-20
  Acyltransferase   2 vrvtglenlpekgpailvaNHqsy..lDvlllwlllyksn.gprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleeg 92 
                       +vtgle++p++g  ++v NH+    lD+l+l+++l++++ ++r +++++++ ++++p++++++r++g   ++             +++ll++g
       KIR63473.1  58 TEVTGLEHVPADGAGLVVGNHSGTvaLDALILSAALHDQHpAHRYLRLLGADLVFRMPVVSEIARKTGGTVACN----------PDAERLLRSG 141
                      689*******************9999**************88799999999999999********999999999..........78999***** PP

  Acyltransferase  93 klvviFPEG.....trsre.gel.lpfkkGlvrlaakakkgvpivPvai 134
                      ++v++FPEG     +  ++ ++l +  + G+v++a+++  g+pivPvai
       KIR63473.1 142 EVVGVFPEGfkgvgKLYSDrYKLqRFGRGGFVSAALRT--GTPIVPVAI 188
                      *********99886433333555888999*********..*******98 PP

>> DAGAT  Diacylglycerol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   5.6e-08   0.00033     105     196 ..     109     197 ..      54     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.6e-08
       DAGAT 105 agqfrtpfrreillllGlievsresieyvLdkeekGravvlvvGGaeealeahpgketltLkkrkGfvkialktGadLvPvysfGendvykq 196
                    fr+p+  ei   +G + +     e +L ++   + v + + G +   +   +  +l    r Gfv  al+tG+++vPv   G +++y  
  KIR63473.1 109 DLVFRMPVVSEIARKTGGTVACNPDAERLLRSG---EVVGVFPEGFKGVGKLYSDRYKLQRFGRGGFVSAALRTGTPIVPVAIVGGEEIYPM 197
                 36899*******999998888888899999865...558999999999999999************************************76 PP

>> Optomotor-blind  Optomotor-blind protein N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3     2e-05      0.12      50      78 ..      78     106 ..      63     107 .. 0.84
   2 ?   -2.9   0.4       1.8   1.1e+04      22      22 ..     223     223 ..     206     248 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2e-05
  Optomotor-blind  50 aayttaedvvlaaaaahqhhPamrPlral 78 
                      ++ t a d ++ +aa h++hPa r lr l
       KIR63473.1  78 HSGTVALDALILSAALHDQHPAHRYLRLL 106
                      667999********************975 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.8
  Optomotor-blind  22 G 22 
                      G
       KIR63473.1 223 G 223
                      2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2039.38
//
Query:       KIR63474.1  [L=217]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.7e-14   51.5   0.0    1.7e-13   50.7   0.0    1.4  1  Response_reg  Response regulator receiver domain
    2.7e-13   49.3   0.0    4.7e-13   48.5   0.0    1.4  1  GerE          Bacterial regulatory proteins, luxR family
    2.7e-06   27.0   0.2    9.1e-06   25.3   0.0    2.0  2  Sigma70_r4_2  Sigma-70, region 4
     0.0026   17.2   0.1      0.009   15.5   0.1    1.9  1  Sigma70_r4    Sigma-70, region 4
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.024   14.4   0.0    1.4  1  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   4.6e-17   1.7e-13       1      91 [.       3      96 ..       3     120 .. 0.90

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 4.6e-17
                  EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSS...SEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHH CS
  Response_reg  1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpg...mdGlellkeireedpelpviiltahseeedavealk 91
                  v+i+dD  l+re+l +ll+e+g e+va++ dg++++  + ++++d+ ++D++mp     +Gl+++ e r+  p +p+++l+++ e ++a + l 
    KIR63474.1  3 VVIADDAVLLREGLVRLLTERGHEVVAAVGDGDALVGAVVAHRPDVSIVDVRMPPshtDEGLRAAVEARRLVPRTPILVLSQYVEVSYADDLLA 96
                  79****************************************************855569*************************999988775 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   1.3e-16   4.7e-13       3      48 ..     154     199 ..     152     212 .. 0.94

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 1.3e-16
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-S CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvk 48 
                 L++RErevL+l+aeG sn+ IA++l +    V+ h++ni++KL++ 
  KIR63474.1 154 LTPREREVLALMAEGHSNTAIARALVVTDGAVEKHVRNIFTKLGLP 199
                 9******************************************976 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1         1   3.7e+03      18      31 ..      79      92 ..      79      92 .. 0.87
   2 !   25.3   0.0   2.5e-09   9.1e-06       8      51 ..     151     193 ..     149     196 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1
                  HHHHHHTS---HHH CS
  Sigma70_r4_2 18 ifllryleglsykE 31
                  i++l+++ + sy++
    KIR63474.1 79 ILVLSQYVEVSYAD 92
                  78999999999986 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 2.5e-09
                   HTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHH CS
  Sigma70_r4_2   8 laeLperqreifllryleglsykEIAellgisegtVksrlsRAr 51 
                   l+eL++r+re++ l   eg+s   IA+ l +++g+V+++++   
    KIR63474.1 151 LRELTPREREVLAL-MAEGHSNTAIARALVVTDGAVEKHVRNIF 193
                   789***********.79**********************98665 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   2.5e-06     0.009       2      48 ..     151     196 ..     151     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.5e-06
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 L++L++rerevl l   eg++   I++ l ++ ++V  + ++ + kL
  KIR63474.1 151 LRELTPREREVLALMA-EGHSNTAIARALVVTDGAVEKHVRNIFTKL 196
                 789***********97.5559999************99999999998 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   6.7e-06     0.024       3      33 ..     152     181 ..     151     191 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.7e-06
      HTH_38   3 khLsleeReeIerllaeGlslreIArrLgrs 33 
                 + L++ eR e  +l aeG+s+ +IAr L + 
  KIR63474.1 152 RELTPRER-EVLALMAEGHSNTAIARALVVT 181
                 579*****.556788***********99665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1639.78
//
Query:       KIR63475.1  [L=160]
Description: hypothetical protein TK50_18315 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-11   43.3   2.8    3.3e-11   43.3   2.8    2.3  4  HTH_31          Helix-turn-helix domain
    4.7e-09   36.2   0.0    6.5e-09   35.7   0.0    1.2  1  HTH_3           Helix-turn-helix
     0.0023   17.7   0.2     0.0088   15.8   0.2    1.9  1  HTH_23          Homeodomain-like domain
     0.0028   17.4   0.4     0.0051   16.5   0.4    1.4  1  HTH_38          Helix-turn-helix domain
     0.0052   16.7   0.0     0.0091   15.9   0.0    1.3  1  HTH_37          Helix-turn-helix domain
     0.0053   16.8   0.0     0.0079   16.2   0.0    1.2  1  HTH_19          Helix-turn-helix domain
     0.0083   15.9   0.3       0.02   14.7   0.3    1.7  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
  ------ inclusion threshold ------
      0.015   15.1   0.2      0.025   14.4   0.2    1.3  1  HTH_25          Helix-turn-helix domain
      0.027   14.4   0.1      0.058   13.3   0.1    1.5  1  MarR_2          MarR family
      0.039   13.4   0.2      0.071   12.5   0.2    1.4  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.069   12.7   0.0       0.11   12.1   0.0    1.3  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.071   12.9   0.3       0.13   12.1   0.3    1.4  1  HTH_IclR        IclR helix-turn-helix domain
       0.19   11.8   0.0       0.28   11.3   0.0    1.2  1  MqsA_antitoxin  Antitoxin component of bacterial toxin-antito


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   2.8   2.4e-14   3.3e-11       6      63 ..      16      72 ..      12      73 .. 0.92
   2 ?   -1.0   0.0       1.6   2.3e+03       1      12 [.      72      83 ..      72      90 .. 0.86
   3 ?   -3.4   0.0       9.8   1.4e+04      51      57 ..     111     117 ..     108     122 .. 0.66
   4 ?   -3.3   1.2       8.7   1.2e+04       9      16 ..     133     140 ..     127     147 .. 0.64

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 2.4e-14
      HTH_31  6 LralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerae 63
                 ra R+ra  sq+e+A+++gv +st++r+E G+ + ps a l++l+ + g   a ++e
  KIR63475.1 16 IRAVRRRADASQRELAAHAGVHPSTIGRIEAGALT-PSIAMLRRLLAVAGFRLAVVDE 72
                69********************************6.***********99998877776 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
      HTH_31  1 aLGalLralRer 12
                ++G+ L+ +R r
  KIR63475.1 72 EFGRVLQPMRDR 83
                69*****99987 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 9.8
      HTH_31  51 aralgld 57 
                 a+++gl 
  KIR63475.1 111 ADVYGLA 117
                 8889884 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 8.7
      HTH_31   9 lReraGLs 16 
                 +R+r+++ 
  KIR63475.1 133 MRRRSRWE 140
                 56666654 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   4.7e-12   6.5e-09       1      49 [.      16      64 ..      16      70 .. 0.91

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 4.7e-12
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHT CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLg 49
                +++ R  ++ sq+eLA+ +Gv++sti riE G   Ps+ +l +l+ + g
  KIR63475.1 16 IRAVRRRADASQRELAAHAGVHPSTIGRIEAGALTPSIAMLRRLLAVAG 64
                89999999************************888*********98765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   6.4e-06    0.0088      10      37 ..      15      44 ..      13      49 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.4e-06
      HTH_23 10 illllae..GlsvreIAreLgvsrrTvyrw 37
                i++++++   +s+re A++ gv+++T+ r+
  KIR63475.1 15 IIRAVRRraDASQRELAAHAGVHPSTIGRI 44
                6666666668******************98 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.4   3.7e-06    0.0051      17      39 ..      21      43 ..      16      44 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.7e-06
      HTH_38 17 laeGlslreIArrLgrspsTIsR 39
                + ++ s+re A + g++psTI R
  KIR63475.1 21 RRADASQRELAAHAGVHPSTIGR 43
                67899****************98 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.6e-06    0.0091      23      77 ..      16      69 ..      11      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.6e-06
                HHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTTEEEEE CS
      HTH_37 23 iaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalGqkvei 77
                i++++++ + sq+e+a++ g++ + + r++ g l+  s+  L++ll+  G+++ +
  KIR63475.1 16 IRAVRRRADASQRELAAHAGVHPSTIGRIEAGALTP-SIAMLRRLLAVAGFRLAV 69
                88899999**********************999975.999999999999999876 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   5.7e-06    0.0079       4      49 ..      16      60 ..      13      66 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.7e-06
      HTH_19  4 LkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkia 49
                ++++R+ +  +q+ela ++g+ +s i  iE g   +ps+ +l++++
  KIR63475.1 16 IRAVRRRADASQRELAAHAGVHPSTIGRIEAGAL-TPSIAMLRRLL 60
                899*****************************77.99999999987 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.3   1.4e-05      0.02       8      36 ..      15      43 ..      13      43 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
  HTH_AsnC-type  8 ILeaLqedaRisyaeLAervGlSestvlr 36
                   I++a ++ a +s +eLA+  G+ +st+ r
     KIR63475.1 15 IIRAVRRRADASQRELAAHAGVHPSTIGR 43
                   9************************9865 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   1.8e-05     0.025       2      35 ..      16      49 ..      15      61 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.8e-05
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT-- CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEeddf 35
                 ra R+++  s +e+a+   ++++++ ++E++ +
  KIR63475.1 16 IRAVRRRADASQRELAAHAGVHPSTIGRIEAGAL 49
                699****************************954 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   4.2e-05     0.058       8      41 ..      13      44 ..       7      47 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.2e-05
                HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHH CS
      MarR_2  8 arvLaaLgrrpgrdltvgelarrlglsksavsri 41
                a ++ a++rr +   +++ela++ g+ +s++ ri
  KIR63475.1 13 AGIIRAVRRRAD--ASQRELAAHAGVHPSTIGRI 44
                678899999998..9****************997 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   5.2e-05     0.071      18      47 ..      13      44 ..      12      45 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.2e-05
  HTH_Tnp_ISL3 18 ayilellles..rsvkavArqlgvSwtTVwri 47
                  a i+++++++  +s ++ A++ gv+++T+ ri
    KIR63475.1 13 AGIIRAVRRRadASQRELAAHAGVHPSTIGRI 44
                  5688889999999******************8 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.9e-05      0.11       8      34 ..      15      41 ..      14      44 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.9e-05
      HTH_24  8 ILelLqknprisqreLAerlglSpstv 34
                I++++++ ++ sqreLA + g+ pst+
  KIR63475.1 15 IIRAVRRRADASQRELAAHAGVHPSTI 41
                99*******************999997 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   9.2e-05      0.13       5      37 ..      12      43 ..      12      44 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.2e-05
                HHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHH CS
    HTH_IclR  5 alaiLdalaeapqeltlselArrtglpkStvhR 37
                a+ i++a+++++ + + +elA+++g+++St  R
  KIR63475.1 12 AAGIIRAVRRRADA-SQRELAAHAGVHPSTIGR 43
                67799999999997.9**************866 PP

>> MqsA_antitoxin  Antitoxin component of bacterial toxin-antitoxin system, MqsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0002      0.28      72     117 ..      14      59 ..       7      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
  MqsA_antitoxin  72 afiarvrkkleldqreaaeifGgGvnafsryekGkvrpplalvkll 117
                       i+ vr++ + +qre+a+  G+   +  r e+G   p++a+++ l
      KIR63475.1  14 GIIRAVRRRADASQRELAAHAGVHPSTIGRIEAGALTPSIAMLRRL 59 
                     57899**********************************9998643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1194.79
//
Query:       KIR63476.1  [L=492]
Description: amino acid permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-54  183.2  34.6    8.9e-54  182.9  34.6    1.1  1  AA_permease_2    Amino acid permease
    6.5e-42  143.7  33.3    7.8e-42  143.5  33.3    1.0  1  AA_permease      Amino acid permease
    1.2e-17   63.7   5.3    1.2e-17   63.7   5.3    4.3  5  AA_permease_C    C-terminus of AA_permease
  ------ inclusion threshold ------
      0.081   13.2   0.1        1.7    8.9   0.0    2.2  2  tRNA_NucTransf2  tRNA nucleotidyltransferase, second domain
        7.6    5.2   7.0       0.88    8.3   0.2    2.3  2  O-antigen_lig    O-antigen ligase like membrane protein


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.9  34.6   2.5e-57   8.9e-54       2     403 ..      32     454 ..      31     473 .. 0.84

  Alignments for each domain:
  == domain 1  score: 182.9 bits;  conditional E-value: 2.5e-57
  AA_permease_2   2 sllsafalvigsvigsgifvkn...laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlas 94 
                    + ++++++ ig+vig+gif  +   +  s+gp +++++ ia ++  l  +l+yaEl+s  p+ g +y+y++a++g+ va++ +w +++ +++++a+
     KIR63476.1  32 GARDLTGFGIGIVIGTGIFTLTgieARDSAGPGVVISFAIAGVVA-LLAALCYAELASSVPTAGSAYTYAYATMGEIVAWIIGWDLLLEFALGAAV 126
                    6678999************99966544459**9*******99999.89********888************************************* PP

  AA_permease_2  95 ilsvaasyllnalgp...dlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdg.ggfssl........... 175
                    ++    +yl+ +lg     + ++  ++ + aia+++l+ ++ i+gi+esa+++n l+++k+  ++++++++gl++v++ +  +++           
     KIR63476.1 127 VARGWSGYLAELLGLptaWFGEEGSIVNVGAIAVVLLLGVVAIVGIRESARVTNLLVLVKV-AICVFIVVAGLFFVKAaNLTPFIppaepagagdd 221
                    ************9954864456789************************************.699***********77566666577777666553 PP

  AA_permease_2 176 ...stetdt.......ffpngwpgv......llgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianl 253
                       +                  p+v      l++ ++v+++++Gfe++an  ee   +k+d+ +++   lli++vly++v+++++g vp  ei+  
     KIR63476.1 222 gikQ----PvtqalfgL----EPSVfgfvgvLSAAAVVFFAYTGFEAVANLGEEtrRPKRDLTLGLLGTLLISTVLYIGVSLVVVGMVPYTEIDRG 309
                    3321....133332222....2222232222667777*****************5445699*********************************64 PP

  AA_permease_2 254 snlgsvaalffeavggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvn.kfgspiraiiltaivslillllfllassaayn 348
                    +    ++a  f+avg+ ++ i+v+i+++ +l   i+  ++++ r+ +a++rdg +P   akv+ ++g+p+r+  +  + + +l+  fl      ++
     KIR63476.1 310 A----PIASAFNAVGAEWAGILVSIAAVAGLTSVILVDLVAMGRIGFAISRDGLIPPSVAKVHpRWGTPYRISAVMTVAVALLA-GFLP-----LS 395
                    4....499*****************************************************************99999985554.4443.....58 PP

  AA_permease_2 349 fllsvsslgliisyllliigalilrkkrphlkrpgk....ilvaiigalfllfllvalf 403
                    +l+++ s+g+++ + l+++++ ilr+krp+l+rp +    +++ i++al +++l+ +l 
     KIR63476.1 396 ALADLVSIGALCAFVLVSVAVPILRRKRPDLERPFRvpfsPVLPIVSALACFYLMLNLS 454
                    *********************************66623324566666666666665554 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.5  33.3   2.2e-45   7.8e-42       5     429 ..      39     453 ..      35     477 .. 0.81

  Alignments for each domain:
  == domain 1  score: 143.5 bits;  conditional E-value: 2.2e-45
  AA_permease   5 ialggviGtglfvglgvvls.qaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlalelta.asil 100
                  + +g viGtg+f+ +g+ ++ +aGp g+++++++agvv +l++l+ +e+a+ +p +g++ytya  ++g+ +++ iG+ +l+ +++++a+   + +++l
   KIR63476.1  39 FGIGIVIGTGIFTLTGIEARdSAGP-GVVISFAIAGVVALLAALCYAELASSVPTAGSAYTYAYATMGEIVAWIIGWDLLLEFALGAAVVARGwSGYL 135
                  789**************98835677.****************************************************88888888877665414566 PP

  AA_permease 101 iqfwelvtdlpkawvt....gavflv.vlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga........gfrflgdngsifknn 185
                   ++++l t+ + +++     ga+ +v +l ++ +vg++ ++++  +l l+k+ + +  ++ g +++  ++++++         g   ++++++  ++ 
   KIR63476.1 136 AELLGLPTAWFGEEGSivnvGAIAVVlLLGVVAIVGIRESARVTNLLVLVKVAICVFIVVAGLFFVKAANLTPFIppaepagaGDDGIKQPVT--QAL 231
                  6677666666666666****6665550566789*********988887777765555555554444444444444445334334477777777..555 PP

  AA_permease 186 lppgfakeeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikes 283
                  ++    +++ + f +++s++++v+fa+tG+e+va++++E++ P++++  + l ++++ t++Y++++l+++ +vp++  +  +       p+ ++++  
   KIR63476.1 232 FGL---EPSVFGFVGVLSAAAVVFFAYTGFEAVANLGEETRRPKRDLTLGLLGTLLISTVLYIGVSLVVVGMVPYTEIDRGA-------PIASAFNAV 319
                  554...599********************************************************************99888.......88999**** PP

  AA_permease 284 gvsvlaplinaviltaalssansslysasRvlyslakdglaP.kvlkkvskrgvPlr.aillsmiisllalllaslnlaapivfnfllaisaligliv 379
                  g   ++ l+ ++  + ++s+++  l+++ R+ ++ ++dgl+P +v+k++ ++g P+r + +++ +++lla +l  ++la          ++ + +l  
   KIR63476.1 320 GAEWAGILVSIAAVAGLTSVILVDLVAMGRIGFAISRDGLIPpSVAKVHPRWGTPYRiSAVMTVAVALLAGFLPLSALA---------DLVSIGALCA 408
                  ********************************************************95555555555555555555555.........8999999999 PP

  AA_permease 380 wlliilsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillil 429
                  ++l++++ + +R++    + ++ e +f+ ++ p ++i+  +a+  ++l l
   KIR63476.1 409 FVLVSVAVPILRRK----RPDL-ERPFRVPFSPVLPIVSALACFYLMLNL 453
                  99999999999999....3334.679999999999988888876554433 PP

>> AA_permease_C  C-terminus of AA_permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.047   1.7e+02      27      49 ..      34      56 ..      29      58 .. 0.81
   2 ?   -3.7   0.2       3.7   1.3e+04      32      38 ..     187     193 ..     179     200 .. 0.47
   3 ?   -3.4   0.4         3   1.1e+04      36      46 ..     245     255 ..     239     258 .. 0.67
   4 ?   -1.6   0.7      0.82   2.9e+03      20      43 ..     279     303 ..     277     306 .. 0.64
   5 !   63.7   5.3   3.4e-21   1.2e-17       1      50 [.     430     479 ..     430     480 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.047
  AA_permease_C 27 ltwirfgvwmliglliYflYgir 49
                     +  fg+ ++ig+ i+ l gi 
     KIR63476.1 34 RDLTGFGIGIVIGTGIFTLTGIE 56
                   556779***********998886 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.7
  AA_permease_C  32 fgvwmli 38 
                    ++++++i
     KIR63476.1 187 VAICVFI 193
                    2233222 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3
  AA_permease_C  36 mliglliYflY 46 
                    + +  +++f+Y
     KIR63476.1 245 LSAAAVVFFAY 255
                    45567888888 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.82
  AA_permease_C  20 LmlqLdsltwirfgvwmli.glliY 43 
                    L+  L + t + +gv +++ g++ Y
     KIR63476.1 279 LLGTLLISTVLYIGVSLVVvGMVPY 303
                    5666666777766666555477666 PP

  == domain 5  score: 63.7 bits;  conditional E-value: 3.4e-21
  AA_permease_C   1 FkvPlvPflPalsIlvNiyLmlqLdsltwirfgvwmliglliYflYgirh 50 
                    F+vP+ P+lP++s l+ +yLml+L++ twirf++wm++g liYf+Yg+r+
     KIR63476.1 430 FRVPFSPVLPIVSALACFYLMLNLSVETWIRFLIWMVLGGLIYFGYGYRR 479
                    9**********************************************985 PP

>> tRNA_NucTransf2  tRNA nucleotidyltransferase, second domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00048       1.7      17      33 ..     123     139 ..     119     148 .. 0.88
   2 ?    1.7   0.0     0.083     3e+02      15      45 ..     231     263 ..     225     276 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00048
                      SSSTTT-SB-HHHHHHH CS
  tRNA_NucTransf2  17 GselkvkGfsGYlaEll 33 
                      G+ +  +G+sGYlaEll
       KIR63476.1 123 GAAVVARGWSGYLAELL 139
                      89999***********9 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.083
                      -BSSSTTT-SB-HHHHH..HHHHHHSSHHHHHH CS
  tRNA_NucTransf2  15 vYGselkvkGfsGYlaE..llvleygsfeevle 45 
                      ++G e +v Gf G l+   ++ ++y +fe+v +
       KIR63476.1 231 LFGLEPSVFGFVGVLSAaaVVFFAYTGFEAVAN 263
                      789999********9762156678999998866 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   2.1      0.22     8e+02      38      77 ..     158     199 ..     150     213 .. 0.37
   2 ?    8.3   0.2   0.00025      0.88      15      55 ..     435     475 ..     432     482 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.22
  O-antigen_lig  38 iiRvlfliiaviylffkkkskkkkki..iiYllllaiylilh 77 
                    i  vl+l +++i ++  ++   ++ +   + +++++++ +l+
     KIR63476.1 158 IAVVLLLGVVAIVGIRESARVTNLLVlvKVAICVFIVVAGLF 199
                    222222222222222222222222222222222333333333 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00025
  O-antigen_lig  15 qPiLDiltsllrrvlnlsftigtiiRvlfliiaviylffkk 55 
                     P+L i+++l   +l l++++ t iR+l+ +++++++ f  
     KIR63476.1 435 SPVLPIVSALACFYLMLNLSVETWIRFLIWMVLGGLIYFGY 475
                    69999****************************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 3404.79
//
Query:       KIR63477.1  [L=336]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-38  130.8   2.4    5.9e-38  130.8   2.4    1.9  2  Peripla_BP_3    Periplasmic binding protein-like domain
    1.5e-26   93.5   0.0    1.9e-26   93.1   0.0    1.1  1  Peripla_BP_1    Periplasmic binding proteins and sugar bindin
    8.3e-18   63.9   0.5    8.3e-18   63.9   0.5    2.4  3  LacI            Bacterial regulatory proteins, lacI family
    2.5e-10   40.4   0.0    5.3e-10   39.3   0.0    1.6  1  Peripla_BP_4    Periplasmic binding protein domain
    0.00053   20.0   0.0     0.0013   18.7   0.0    1.6  1  HTH_3           Helix-turn-helix
     0.0013   19.1   1.1     0.0075   16.6   0.1    2.9  2  HTH_31          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.041   13.8   0.0        0.1   12.5   0.0    1.6  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
       0.06   13.2   0.1       0.22   11.4   0.1    2.1  1  HTH_23          Homeodomain-like domain
      0.079   12.7   0.1        2.2    8.1   0.1    3.0  3  MerR            MerR family regulatory protein
        0.2   11.8   0.0       0.46   10.7   0.0    1.5  1  DUF1835         Domain of unknown function (DUF1835)


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.76   1.4e+03      23      43 ..      72      92 ..      24     137 .. 0.66
   2 !  130.8   2.4   3.3e-41   5.9e-38       1     166 []     168     333 ..     168     333 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.76
                  -HHHHHHHHHHHHHHTTSSS- CS
  Peripla_BP_3 23 asasderergfrqaleelglp 43
                  a+++ e+ r +  a++e+g  
    KIR63477.1 72 APYYAELARHVVTAAAEQGWM 92
                  444444444444444444444 PP

  == domain 2  score: 130.8 bits;  conditional E-value: 3.3e-41
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC...-SEEEEESSCCHHHHHHHHHC CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaa...lPtAviaasDelAlgvlqalr 94 
                   ++hL++lG rria ig  +  + + +++r++g++ al+e+g+  +e++va++++   a+ +aa   + l l +   +P+Av++ +D lAlg+l+al+
    KIR63477.1 168 TAHLLALGRRRIAAIGARPTPEGTGARLRLAGYAAALAEAGIAYDERLVASAPAWRRADGAAAV--RHL-L-TsgvRPDAVLCFDDTLALGALRALH 260
                   57**************88888899*******************999999887664444444443..222.1.2246********************* PP

                   CTT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEE.E--EEE--GGG CS
  Peripla_BP_3  95 eaglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvl.lppelveReSt 166
                   eaglrvP d+++ gf d+e  ++++P lTtv+++ e+++r a++ll+d+++g++  p++vl +p++l +ReSt
    KIR63477.1 261 EAGLRVPGDVALAGFGDIEDGRFAVPTLTTVAPDKERIARLAVDLLADRIDGDRSGPPRVLtVPYRLDTREST 333
                   *****************9999***************************************************8 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.0   1.1e-29   1.9e-26       3     269 ..      62     320 ..      60     331 .. 0.88

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 1.1e-29
                   EEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EE CS
  Peripla_BP_1   3 klglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPcv 98 
                    + l +p+ld+P++++l   +  aa+e+g++vl+  +g++ + + + +  +  + idgli+  ++   +d+   + +  p ++l++ + +p   + v
    KIR63477.1  62 MIALAVPELDAPYYAELARHVVTAAAEQGWMVLIARTGGGTERErAVAAGIGGHLIDGLILSPPALAAEDLANLHDG-TPTVLLGERV-DPGPADHV 156
                   67889***************************************777889**************************9.8888888884.45479999 PP

                   EE-HHHHHHHHHHHHHHHHHHHTG.EEEEEE-TTS.HHHHHHHHHHHHHHHTT-GGGEEEEE-SSS.SHHHHHHHHHHHHTT-..TT-SEEE-SSHH CS
  Peripla_BP_1  99 ipddtqageestqkLiaeghkrpi.allegpesal.takervqGflaalaeaGlevkdvhvalgsn.diedaaealnellesh..Peidaivainde 190
                     dd  a+  +t +L+a g +r i a+ + p+ ++ +a+ r  G+ aalaeaG    ++ va+     + d+a a+ +ll s+  P+  a+ +  d+
    KIR63477.1 157 TIDDVAAARVATAHLLALGRRR-IaAIGARPTPEGtGARLRLAGYAAALAEAGIAYDERLVASAPAwRRADGAAAVRHLLTSGvrPD--AVLCFDDT 250
                   9*********************.95666677888877888999***********999999998866256789***************..******** PP

                   HHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-SEEEE--EE CS
  Peripla_BP_1 191 aalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkinkerehprvl 269
                    alGa +al  +G l+ +++v     ++ ++  +   +d+ +  + l++    +e + r a d + + i  +r +p ++
    KIR63477.1 251 LALGALRALHEAG-LRVPGDV-----ALAGFGDI---EDGRFAVPTLTTVAPDKERIARLAVDLLADRIDGDRSGPPRV 320
                   *************.*******.....55555555...9************99999******9*9999998887776444 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.5   4.7e-21   8.3e-18       2      46 .]       5      49 ..       4      49 .. 0.99
   2 ?   -2.1   0.0       1.9   3.5e+03      29      40 ..      78      89 ..      73      90 .. 0.71
   3 ?   -1.9   0.3       1.7     3e+03       1       7 [.     157     163 ..     157     167 .. 0.86

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 4.7e-21
                HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                +kDVA++AGVS+ TVS v+n+ ++V+ +tr rVe+a++el Y+Pn
  KIR63477.1  5 LKDVAERAGVSVKTVSNVVNGYQHVRPDTRARVEQAIAELRYRPN 49
                8*******************************************9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.9
                HHHHHHHHHHHH CS
        LacI 29 etrerVeaamee 40
                  r+ V+aa+e+
  KIR63477.1 78 LARHVVTAAAEQ 89
                457788888875 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.7
                 -HHHHHH CS
        LacI   1 tikDVAr 7  
                 ti+DVA 
  KIR63477.1 157 TIDDVAA 163
                 89***96 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   2.9e-13   5.3e-10       1     256 [.      63     312 ..      63     314 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 2.9e-13
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT.-SEEEE--SSHHHHH.HHHHHHHHTT-EEEEESTTGCTTT- CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakg.vdgiivapvdstala.palkkakaaGIpVvafdsddapsge 95 
                   i+++v+  + p+  ++   +  aa+e g+ v +     +  +e   ++ + i  +  dg+i++p      a + l+ ++  G p v       ++  
    KIR63477.1  63 IALAVPELDAPYYAELARHVVTAAAEQGWMVLIA--RTGGGTERERAVAAGIGGHlIDGLILSPPAL---AaEDLANLH-DGTPTVLLGER--VDPG 151
                   6788888888888888888888888889988883..3444455555555666666799999997664...224566666.57888888888..7888 PP

                   CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEE..TSCCCHHHHHHHHHHHHHHHHH-TTCEECC..EEESTTTCHHHHHHHHHHHHHTT.TECEE CS
  Peripla_BP_4  96 rlayvgfdneaaGelqaeylaeklggkkgkvvil..aGspgdpnaeeriegfrkvlkeypgikiva..evaganwdaekaqqalealltan.pldgi 187
                    + +v++d  aa++++   l+     +   ++++  + +p  + a++r++g  ++l+e  gi + +  ++ ++ w ++++  a+  llt     d++
    KIR63477.1 152 PADHVTIDDVAAARVATAHLLALGRRR---IAAIgaRPTPEGTGARLRLAGYAAALAE-AGIAYDErlVASAPAWRRADGAAAVRHLLTSGvRPDAV 244
                   999******************999966...666644788889999999**********.566666654444889***************76568*** PP

                   EESSCCHHHCHHHHHHHTTT..TSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT CS
  Peripla_BP_4 188 laandgmaegalealeaagl..agkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkG 256
                   l+++d+ a+gal+al +agl   g+v+++g++  +  + a+   t   tva d   +++ av+l+++ ++G
    KIR63477.1 245 LCFDDTLALGALRALHEAGLrvPGDVALAGFGDIEDGRFAVPTLT---TVAPDKERIARLAVDLLADRIDG 312
                   ********************9999999999999999998886666...99************999998887 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   7.4e-07    0.0013      12      40 ..       5      33 ..       3      41 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 7.4e-07
                HHHHHHHHTSSHHHHHHHHTTSSCSBHHH CS
       HTH_3 12 qeeLAeklGvsrstisriEnGernPslet 40
                ++++Ae++Gvs+ t+s+  nG+++ +++t
  KIR63477.1  5 LKDVAERAGVSVKTVSNVVNGYQHVRPDT 33
                589******************99999987 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   4.2e-06    0.0075      16      53 ..       4      40 ..       1      52 [. 0.87
   2 ?   -1.3   0.1       1.6   2.9e+03      31      45 ..     275     289 ..     252     303 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.2e-06
      HTH_31 16 sqeevAerlgvsestlsrlEqGrrgrpspavlealara 53
                ++++vAer+gvs+ t+s + +G +  ++p++ +++ +a
  KIR63477.1  4 RLKDVAERAGVSVKTVSNVVNGYQ-HVRPDTRARVEQA 40
                789*********************.6988888777666 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
      HTH_31  31 lsrlEqGrrgrpspa 45 
                  +++E Gr  +p++ 
  KIR63477.1 275 FGDIEDGRFAVPTLT 289
                 456666666666555 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.6e-05       0.1      13      46 ..       7      40 ..       4      46 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.6e-05
  YdaS_antitoxin 13 aLAealgvsqqaVsqWlkgkkqvpaervpeIeka 46
                     +Ae+ gvs ++Vs++++g++ v +     +e+a
      KIR63477.1  7 DVAERAGVSVKTVSNVVNGYQHVRPDTRARVEQA 40
                    68*******************9988777777776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00012      0.22      18      42 ..       3      27 ..       2      41 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
      HTH_23 18 lsvreIAreLgvsrrTvyrwlkryr 42
                ++ +++A++ gvs  Tv+++++ y+
  KIR63477.1  3 HRLKDVAERAGVSVKTVSNVVNGYQ 27
                5789*****************9994 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0012       2.2       3      16 ..       6      19 ..       4      19 .. 0.91
   2 ?   -0.7   0.0      0.73   1.3e+03       2      17 ..      41      56 ..      41      57 .. 0.87
   3 ?   -0.1   0.0      0.45   8.1e+02      15      25 ..     255     265 ..     254     269 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0012
                HHHHHHHTTTHHHH CS
        MerR  3 gevAeltGvsprtL 16
                ++vAe++Gvs++t+
  KIR63477.1  6 KDVAERAGVSVKTV 19
                79**********96 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.73
                HHHHHHHHTTTHHHHH CS
        MerR  2 IgevAeltGvsprtLR 17
                I e+  ++++s+r LR
  KIR63477.1 41 IAELRYRPNLSARNLR 56
                67888899******99 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.45
                 HHHHHHHTTSS CS
        MerR  15 tLRyYEreGLi 25 
                 +LR +++ GL 
  KIR63477.1 255 ALRALHEAGLR 265
                 69*******95 PP

>> DUF1835  Domain of unknown function (DUF1835)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00026      0.46      10      43 ..     228     261 ..     225     265 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00026
     DUF1835  10 agsLkqalkekgraekvlaleddLsvGpiknlde 43 
                 a+++++ l +  r++ vl++ d L++G ++ l+e
  KIR63477.1 228 AAAVRHLLTSGVRPDAVLCFDDTLALGALRALHE 261
                 6789**************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2582.06
//
Query:       KIR63478.1  [L=337]
Description: hypothetical protein TK50_18430 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.34    9.0  11.0      0.086   11.0   0.8    2.0  2  HOOK             HOOK protein
       0.65    9.8   3.9         20    4.9   0.0    2.3  2  Selenoprotein_S  Selenoprotein S (SelS)
        3.2    8.2   7.3         28    5.2   2.6    2.5  2  DUF4140          N-terminal domain of unknown function (DUF41
        8.8    6.8  12.6        5.1    7.5   6.3    2.1  2  DUF4200          Domain of unknown function (DUF4200)


Domain annotation for each model (and alignments):
>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.8   1.9e-05     0.086     466     522 ..      43      98 ..      39     117 .. 0.87
   2 ?    2.5   3.7    0.0069        31     474     524 ..     131     181 ..     120     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.9e-05
        HOOK 466 KmLklkqegseeekltelqelledanrrkneLetenrlanqrileLeaqveelqkal 522
                 K L+++ e    +   e +++l++++rr++ L  + ++ + r+  L aqv e++ + 
  KIR63478.1  43 KKLREALESA-AKGHIEAKAKLDNSKRRQQLLTAQLKTVETRLVGLTAQVGEVAAQS 98 
                 8898888887.66677799*********************************98775 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.0069
        HOOK 474 gseeekltelqelledanrrkneLetenrlanqrileLeaqveelqkalqe 524
                 ++++++l e+ e  ++anr k  ++ e r +++++  L ++  e ++al++
  KIR63478.1 131 QRDSRRLREMIETRDEANRAKIAIDAEVREQQKQLAALAKKKREAETALAA 181
                 3457899*******************************9998887777655 PP

>> Selenoprotein_S  Selenoprotein S (SelS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0045        20      89     119 ..      42      72 ..      26      76 .. 0.89
   2 ?    4.9   1.4    0.0046        21      44      95 ..     123     175 ..     104     184 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0045
  Selenoprotein_S  89 RlrmqeeldakaekfkekkkqleeekRrqki 119
                       +++ e l++ a+ + e k +l++ kRrq++
       KIR63478.1  42 TKKLREALESAAKGHIEAKAKLDNSKRRQQL 72 
                      57899***********************985 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0046
  Selenoprotein_S  44 ivllllliqklrkrlralrqresdksaaaldpdvvvkrqea.leaaRlrmqee 95 
                       v l ++ q+ ++rlr + + + +++ a++  d +v+ q++ l+a  ++  e 
       KIR63478.1 123 AVELDVMAQRDSRRLREMIETRDEANRAKIAIDAEVREQQKqLAALAKKKREA 175
                      5778899999999***8888888888889899988887665155444444443 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2    0.0072        32      43      93 ..      11      82 ..       4      97 .. 0.52
   2 ?    5.2   2.6    0.0062        28      66      96 ..     150     180 ..     110     184 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0072
     DUF4140 43 gagaatildvqver......vpnreaeee...............elkalraeleeledelaaledelaaaea 93
                g+g++t+l v+v+       vp   +++e                  +++a+l++ +++++ l+++l+++e+
  KIR63478.1 11 GRGPLTVLLVAVALllgvgaVPAAAEPNEggtkklrealesaakGHIEAKAKLDNSKRRQQLLTAQLKTVET 82
                555555555555554444434444444444333344333333322444555555555555555555555555 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0062
     DUF4140  66 elkalraeleeledelaaledelaaaearla 96 
                 +  a++ae++e +++laal ++++ ae+ la
  KIR63478.1 150 AKIAIDAEVREQQKQLAALAKKKREAETALA 180
                 2334455555555555555555555444443 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.4     0.029   1.3e+02      50      96 ..      45      91 ..      39     101 .. 0.61
   2 ?    7.5   6.3    0.0011       5.1      46     105 ..     122     181 ..     117     184 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.029
     DUF4200 50 fdkflkendakraralkkaeeerklkkekeaeikklkaeietlksei 96
                + + l++  +  ++a  k ++ +++++  +a++k  ++ ++ l ++ 
  KIR63478.1 45 LREALESAAKGHIEAKAKLDNSKRRQQLLTAQLKTVETRLVGLTAQV 91
                45555555566666666666666666666666666666666665554 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0011
     DUF4200  46 dllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleeklee 105
                 +++++d + +   ++ ++ ++  +e +++k   +ae+++ ++++++l +++++ e +l+ 
  KIR63478.1 122 RAVELDVMAQRDSRRLREMIETRDEANRAKIAIDAEVREQQKQLAALAKKKREAETALAA 181
                 678888888888999999999999*******************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1394  (0.0777511); expected 358.6 (0.02)
Passed bias filter:                      746  (0.0416086); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2323.14
//
Query:       KIR63479.1  [L=324]
Description: hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-24   85.3   0.0    2.5e-17   63.4   0.1    2.2  2  Abhydrolase_1  alpha/beta hydrolase fold
    1.8e-19   71.2  10.8    2.6e-19   70.7  10.8    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
    1.1e-16   60.9   0.1    2.6e-16   59.6   0.1    1.6  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0001   22.5   0.0    0.00018   21.7   0.0    1.3  1  Thioesterase   Thioesterase domain
    0.00015   21.0   0.0    0.00021   20.5   0.0    1.1  1  IFRD           Interferon-related developmental regulator (IF
     0.0014   17.4   0.0      0.004   15.9   0.0    1.7  2  AXE1           Acetyl xylan esterase (AXE1)
     0.0057   16.8   0.0       0.01   15.9   0.0    1.4  1  Abhydrolase_4  TAP-like protein
  ------ inclusion threshold ------
      0.014   15.1   0.0        2.1    8.0   0.0    2.3  2  PGAP1          PGAP1-like protein
      0.079   12.9   0.0       0.14   12.1   0.0    1.4  1  UPF0227        Uncharacterised protein family (UPF0227)
       0.22   10.6   0.0       0.55    9.3   0.0    1.6  2  DUF2048        Abhydrolase domain containing 18


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.1   1.4e-20   2.5e-17       4     113 ..      49     150 ..      47     160 .. 0.92
   2 !   19.8   0.0   2.7e-07   0.00049     206     255 ..     237     297 ..     195     299 .. 0.80

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 1.4e-20
                    EEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEE CS
  Abhydrolase_1   4 vilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyperVk 99 
                    +++hGl+gss +w    la  La+ + d  ++Dl+G+g+S+p+ +     y+  ++a+ + r  ++ + ++++l+G S+GG+++  +aa+ p+ V+
     KIR63479.1  49 LYVHGLGGSSQNWTD--LAGLLAD-RLDGQAIDLPGFGHSEPSRR-----YTVPAFAEHVVRWIEHSDRGPVHLLGNSLGGAVSVRVAALRPDLVR 136
                    689************..9988887.*******************8.....88899***************************************** PP

                    EEEEESECSSCCHH CS
  Abhydrolase_1 100 alvllgaidpaasl 113
                     l+l+++  p+ ++
     KIR63479.1 137 TLTLISPALPFLDF 150
                    *******5555554 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 2.7e-07
                    C...........THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 206 e...........lknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafle 255
                    +             +v +ptlvi+g+ D+lv+ ++  + a+ +p++rl+ + + gH a+le
     KIR63479.1 237 SylrgpeslwrlAAAVRVPTLVIGGSADRLVDVRVAPQAARVIPDSRLLMLRGVGHVAQLE 297
                    233356677776688999*****************************************97 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7  10.8   1.4e-22   2.6e-19       3     220 .]      50     305 ..      48     305 .. 0.65

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 1.4e-22
                    EE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS.--HHH.CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC....EE.EEE CS
  Abhydrolase_6   3 llHGagssassWlvapLaallaagvhvlapDlpGhGrsdppp.ldled.ladlaalldelaagggpvvlvGHSlGGalalaaapla..lvvg.vll 93 
                     +HG+g+s+  W    La lla++    a+DlpG+G+s+p+  +++++ ++++++ +++   ++gpv+l+G+SlGGa++ ++a+l   lv++  l+
     KIR63479.1  50 YVHGLGGSSQNWT--DLAGLLADRLDGQAIDLPGFGHSEPSRrYTVPAfAEHVVRWIEHS--DRGPVHLLGNSLGGAVSVRVAALRpdLVRTlTLI 141
                    59**********8..88888899977789*******775555455544344445555555..69*****************444447555559*** PP

                    S-..----TTT....S----TTHHHHHHTT-CCCCHCCH.....S-HS.CCCCHHH......CCCCHCHCCCGHH..................... CS
  Abhydrolase_6  94 dppptalpagl....laaalelllallallrllawlsre.....plpr.lfladed......adaawrarlarla..................... 152
                    +p   alp+++    l+ ++ +lla+++ +rl +w  ++     + ++  + ++++      + ++ +++    +                     
     KIR63479.1 142 SP---ALPFLDfrrsLQGRMLPLLAVPRGERLVGWQLARldpkvM-AQqVMESCVAdltrisE-QRRQEA----Leeillryqaahyasvyvrtfr 228
                    **...8888888888999999999999999999999776445531.22122222222212221.111111....1233344444444444444333 PP

                    .......HHCCHHC..HTTCCHHTT-TTGCEEE.CTT-CHHH.HCHHCCCH.STTEEETCE...SSS-HHHHSHHHHHHH CS
  Abhydrolase_6 153 .......allaglg..llpaaawadlpvpllvl.ggeDplvp.rllerlla.qagarlpvvlpgaGHlphleepdevaea 220
                           +  ++l   +  ++  a+++vp+lv+ g++D+lv  r + ++++ +++ rl   l+g GH+ +le p+ va+a
     KIR63479.1 229 glvssflR--SYLRgpESLWRLAAAVRVPTLVIgGSADRLVDvRVAPQAARvIPDSRL-LMLRGVGHVAQLEVPRTVARA 305
                    33332111..111122333667777777779996699**6663555577778899999.************9***99986 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.1   1.4e-19   2.6e-16       9     232 ..      50     292 ..      48     298 .. 0.81

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 1.4e-19
  Hydrolase_4   9 lvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse.gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvagli 105
                   vHGl+ +s+   +la  La++  +  a+D  G+G+se  +r  vp f ++v        +  e++ + p+ llG S+GG++++++++ +pd v+ l 
   KIR63479.1  50 YVHGLGGSSQNWTDLAGLLADR-LDGQAIDLPGFGHSEpSRRYTVPAFAEHVV-------RWIEHSDRGPVHLLGNSLGGAVSVRVAALRPDLVRTLT 139
                  69**************988876.999************777778888877664.......334456678***************************** PP

  Hydrolase_4 106 lsaPalkikakl............kappllklllkllgkllpklqv..................snnlkadslsrdpevvaayeadplv.hgkitvrl 172
                  l++Pal    ++             +p+  +l+ + l++l pk+                     ++ + + l r+++    y++      +++  ++
   KIR63479.1 140 LISPALPFL-DFrrslqgrmlpllAVPRGERLVGWQLARLDPKVMAqqvmescvadltriseqrRQEALEEILLRYQAA--HYASVYVRtFRGLVSSF 234
                  ****98443.444556777777743777777788888888777777999*******99998866666666666666654..45555555556677799 PP

  Hydrolase_4 173 llelldamkrleeraakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyH 232
                  l++ l++ ++l++ aa++++P+l++ G+aD++vd + + ++++ ++  d +l +  g  H
   KIR63479.1 235 LRSYLRGPESLWRLAAAVRVPTLVIGGSADRLVDVRVAPQAARVIP--DSRLLMLRGVGH 292
                  **************************************99999999..788877777777 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0     1e-07   0.00018       6      85 ..      51     129 ..      47     131 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1e-07
                   E--TTCCSGGGHHHHHHCTTCEEEEEEECSTTSTSHHHC.TTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHH CS
  Thioesterase   6 fppagGsasvfrslasklsdpvvevlavqlpgrerdepp.lesieelaaeyaealrqiqpegPyalfGhSlGgllAfevAr 85 
                   +++ gGs++  + la  l d+  +  a+ lpg++ +ep    +  + a+ ++  ++ + ++gP++l G SlGg++  +vA+
    KIR63479.1  51 VHGLGGSSQNWTDLAGLLADR-LDGQAIDLPGFGHSEPSrRYTVPAFAEHVVRWIE-HSDRGPVHLLGNSLGGAVSVRVAA 129
                   8999****************9.***********84444414467777777777776.56788**************99996 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.2e-07   0.00021      37     111 ..     185     260 ..     179     284 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.2e-07
        IFRD  37 eekLkqaidelteksaktReaaLesllell.sshyleefveerlatlldalekslkkgkse.EqalAlkalallcit 111
                 ++ ++ ++ +lt+ s + R++aLe++l  + + hy+  +v++ +  l++++++s  +g ++  +++A+  +  l+i 
  KIR63479.1 185 QQVMESCVADLTRISEQRRQEALEEILLRYqAAHYASVYVRT-FRGLVSSFLRSYLRGPESlWRLAAAVRVPTLVIG 260
                 577899*******************99888456*******88.6667777777766666654555555556666665 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.2e-06     0.004     162     215 ..      98     154 ..      89     158 .. 0.80
   2 ?   -2.6   0.0      0.93   1.7e+03     263     278 ..     304     319 ..     297     321 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.2e-06
                 HHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHH-SS-SE....EEEES-SSSSHHHHH CS
        AXE1 162 veivaslpevDeeRvavlGasqGGalalavaalekrika....vvadyPfLsdfkRvv 215
                  ++v+ +++ D   v  lG+s GGa+++ vaal +++      + +  PfL df+R +
  KIR63479.1  98 EHVVRWIEHSDRGPVHLLGNSLGGAVSVRVAALRPDLVRtltlISPALPFL-DFRRSL 154
                 568888999999*********************987644111156889999.999976 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.93
                 EEEEETT-SSS-HHHH CS
        AXE1 263 llsvgLeDevcpPstv 278
                 + + gL Dev+ P tv
  KIR63479.1 304 RAVLGLLDEVANPVTV 319
                 55789********997 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.7e-06      0.01      26      92 ..     245     311 ..     238     321 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.7e-06
  Abhydrolase_4  26 rdestakgaapvLllqnerDpaTPyegakklakalggavlvtvegeGHgalaagntCvdkavdaYLl 92 
                     ++  a++ +p+L++++  D  +  + a ++a+ +++++l++ +g GH a  +  + v +av   L+
     KIR63479.1 245 LWRLAAAVRVPTLVIGGSADRLVDVRVAPQAARVIPDSRLLMLRGVGHVAQLEVPRTVARAVLGLLD 311
                    5556667789**************************************9987777777777766665 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0012       2.1       5      29 ..      46      70 ..      42      92 .. 0.86
   2 ?    4.8   0.0     0.011        20      92     128 ..     111     143 ..      98     158 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0012
       PGAP1  5 ipVlFvpGnagsykqvrslAseaae 29
                +p l+v+G++gs +++  lA+  a+
  KIR63479.1 46 EPALYVHGLGGSSQNWTDLAGLLAD 70
                799*****************98755 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.011
       PGAP1  92 sviliGHSmGGivaraaltlknyikqsvntiltlasP 128
                  v l+G S+GG v+   +  ++++++ v+t+ tl sP
  KIR63479.1 111 PVHLLGNSLGGAVS---VRVAALRPDLVRTL-TLISP 143
                 589***********...66666777888775.55555 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     8e-05      0.14       3     161 ..      49     223 ..      48     230 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8e-05
     UPF0227   3 lYlHGFdSSPlshk..aqllsqfiaedvlai...elsvlklkedpqqalkeleklvaelgddnillvGssLGGyyatrlgerf.glrq..vllnPal.. 91 
                 lY+HG   S ++    a ll  +++ + +++     s +  +      ++++ + ++++    + l G sLGG ++ r++++  +l+    l+ Pal  
  KIR63479.1  49 LYVHGLGGSSQNWTdlAGLLADRLDGQAIDLpgfGHSEPSRRYTVPAFAEHVVRWIEHSDRGPVHLLGNSLGGAVSVRVAALRpDLVRtlTLISPALpf 147
                 6888887777776433667777777766665211445555555666667788888887776669***************98642555557899999722 PP

     UPF0227  92 .kplenlagklgeeavqstqetyvleeyhiielkalelsrlkr..perilvllskqDevldy...rravaefraaa 161
                   + ++l+g++      + +e+ v  + +  + k+++ ++++    + + +  ++  e l+    r ++a++++++
  KIR63479.1 148 lDFRRSLQGRMLPLLAVPRGERLVGWQLARLDPKVMAQQVMEScvADLTRISEQRRQEALEEillRYQAAHYASVY 223
                 2456788888776666666777777777777777777666655224556677777777776666666777776665 PP

>> DUF2048  Abhydrolase domain containing 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0003      0.55     163     210 ..      97     144 ..      91     151 .. 0.90
   2 ?   -2.4   0.0       1.1   1.9e+03     304     334 ..     264     295 ..     256     306 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0003
     DUF2048 163 slvllhwlereGyGplgltGlSmGGhmaslaasnwpkplvlvpclsws 210
                 + ++++w+e+   Gp+ l G S+GG  +  +a++ p  + ++ ++s++
  KIR63479.1  97 AEHVVRWIEHSDRGPVHLLGNSLGGAVSVRVAALRPDLVRTLTLISPA 144
                 56899****************************999999999998875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
     DUF2048 304 Dayvpresvaslqeiwpgsevryldg.GHvsa 334
                 D+ v  +   +  ++ p+s   +l g GHv  
  KIR63479.1 264 DRLVDVRVAPQAARVIPDSRLLMLRGvGHVAQ 295
                 55555555557778999999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2542.43
//
Query:       KIR63480.1  [L=393]
Description: molybdopterin biosynthesis-like protein MoeZ [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-65  219.1   0.0    7.7e-65  218.6   0.0    1.1  1  ThiF             ThiF family
    2.4e-13   50.5   0.0    5.8e-13   49.3   0.0    1.7  2  Rhodanese        Rhodanese-like domain
  ------ inclusion threshold ------
       0.03   14.6   0.6        0.5   10.6   0.4    2.8  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.6   0.0   1.3e-68   7.7e-65       1     240 [.      21     254 ..      21     262 .. 0.94

  Alignments for each domain:
  == domain 1  score: 218.6 bits;  conditional E-value: 1.3e-68
                 THHHHHH..HHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-C CS
                 xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   1 ysrqlal..lgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteri 97 
                 ysr+l +  +g +gq++L++++vl vGaGglGs++l +La++Gvg l ++D+D+++ sNl+Rq++++ +d+G++Kae+aa++++einp v+ve ++  +
  KIR63480.1  21 YSRHLIIpdVGVEGQKRLKNARVLCVGAGGLGSPALLYLAAAGVGTLGIIDFDTVDESNLQRQVIHGVSDVGRSKAESAAASIREINPLVNVEIHNTAL 119
                 788877787888*************************************************************************************** PP

                 CGCCS-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHHHHHCTE-B-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  98 tdetvleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplctsiagnipaiatttavv 196
                 + ++ ++e+++++Dl+vd++Dn+++r++vn+a+v  g+p++ ++  +f+gq+ v+  ++ +cy+Cl+p   e p++ +vp+c +  g   +++ ++a +
  KIR63480.1 120 DRDN-VREIFSGYDLIVDGTDNFATRYMVNDAAVLLGKPYVWGSIYRFDGQASVFWAEHGPCYRCLYP---EPPPPGMVPSC-AEGG---VLGVLCASI 210
                 9998.57************************************************669**********...***********.9999...********* PP

                 HHHHHHHHHHHHTTBCGGGCCEEEECCTTTTEEEEECCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 197 aglaalellkllsgkeklenslltqvdllesrfenvelerakks 240
                 ++++++e++kll g  +  + +l  +d+le++++++++++++++
  KIR63480.1 211 GSIQVNEAIKLLAGIGEPLVGRLMVYDALEMSYRKIKVRKDPNC 254
                 ************666666666666**************999976 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.9   1.7e+04      65      87 ..      39      61 ..      31      69 .. 0.70
   2 !   49.3   0.0   9.7e-17   5.8e-13       1     105 [.     291     383 ..     291     385 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.9
   Rhodanese 65 nkktvvvycdgggraaaaaallk 87
                ++ +v ++++gg ++ a+ +l+ 
  KIR63480.1 39 KNARVLCVGAGGLGSPALLYLAA 61
                67788888888888777766555 PP

  == domain 2  score: 49.3 bits;  conditional E-value: 9.7e-17
   Rhodanese   1 sakelkellekgkva.llDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvld 98 
                 +a+elke +++gk + l+DvR+p+eYe  +Ipg+  +           ++      e+l++l   +++++v++c++g r+a+a a+lk++G+ +  ++ 
  KIR63480.1 291 TAAELKEWQDAGKDIfLVDVREPAEYEIVRIPGSTLI-----------PKGEIISGEALAKL--PQDRQIVLHCKSGVRSAEALAALKAAGFRDAVHVQ 376
                 689******9999779*********************...........44555555555555..899************************999***** PP

   Rhodanese  99 GGfkawk 105
                 GG+ +w 
  KIR63480.1 377 GGVLSWI 383
                 ****997 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   8.3e-05       0.5       1      97 [.      43     159 ..      43     171 .. 0.84
   2 ?   -1.6   0.0      0.49     3e+03      61      88 ..     337     363 ..     334     369 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.3e-05
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.........................TTTCEEEEE--TTTHHHHHHHHHTT CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka.........................lgvrfeaialdaenyeavLaallke 69 
                      vl++GaG+ G++++ +la+ +    ++ ++d++     +l  ++                          +v+++++ald++n+++    + ++
       KIR63480.1  43 VLCVGAGGLGSPALLYLAAAGVG--TLGIIDFDTVDESNLQRQVihgvsdvgrskaesaaasireinplVNVEIHNTALDRDNVRE----IFSG 130
                      7999**************99866..8999999988877887777889999999999999999999999999999999999999999....7778 PP

                      SSEEEE-SSGG.GHHHHHHHHHHHT-EEE CS
  Sacchrp_dh_NADP  70 gdlvvnlsppi.ssldvlkaCietgvhyv 97 
                      +dl+v+ + ++     v +a++  g  yv
       KIR63480.1 131 YDLIVDGTDNFaTRYMVNDAAVLLGKPYV 159
                      89999999999555567777777777766 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.49
                      HHHHHHHTTSSEEEE-SSGGGHHHHHHH CS
  Sacchrp_dh_NADP  61 avLaallkegdlvvnlsppissldvlka 88 
                      a La+l +++++v+++   + s++ l+a
       KIR63480.1 337 A-LAKLPQDRQIVLHCKSGVRSAEALAA 363
                      5.88899999999999998877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2793.79
//
Query:       KIR63481.1  [L=348]
Description: theronine dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-74  248.1   0.8      7e-73  244.6   0.0    2.0  2  Glu_dehyd_C    Glucose dehydrogenase C-terminus
      2e-13   50.2   0.0    3.3e-13   49.4   0.0    1.4  1  ADH_N          Alcohol dehydrogenase GroES-like domain
    4.1e-06   26.8   0.2    1.7e-05   24.8   0.2    2.0  1  ADH_zinc_N     Zinc-binding dehydrogenase
     0.0015   18.7   0.3     0.0054   16.9   0.3    2.0  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0045   16.3   0.3     0.0045   16.3   0.3    1.4  2  FAD_binding_3  FAD binding domain
     0.0075   15.0   0.0       0.01   14.5   0.0    1.1  1  HI0933_like    HI0933-like protein
  ------ inclusion threshold ------
      0.017   14.4   0.0      0.024   13.9   0.0    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.053   12.8   0.1      0.075   12.3   0.1    1.2  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.091   12.3   3.2      0.075   12.6   1.0    2.1  3  DAO            FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.058   1.2e+02       4      43 ..      29      69 ..      26      73 .. 0.86
   2 !  244.6   0.0   3.5e-76     7e-73       1     212 []     144     346 ..     144     346 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.058
  Glu_dehyd_C  4 gvLvEPisiveKaielaeasrsafewep.esalvlGaGslG 43
                 ++LvE +++   + ++ +  +   e  p +salvlG  slG
   KIR63481.1 29 AILVEALAVGICGTDHEIVEGTFGEAPPgASALVLGHESLG 69
                 7899999999999999999888888887579********99 PP

  == domain 2  score: 244.6 bits;  conditional E-value: 3.5e-76
  Glu_dehyd_C   1 advgvLvEPisiveKaielaeasrsafewepesalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYvdsretpvdeipeas 98 
                  a+vg+L+EP+s+v+Ka++++e++++++ew+p++alv+GaG++GLLa all++ +rg+  v+vl+r  +++p++dlv++lGatY++ +  ++d +    
   KIR63481.1 144 APVGMLLEPTSVVAKAWDHIERIGARAEWQPQTALVTGAGPIGLLA-ALLAT-QRGFA-VHVLDR-AETGPKPDLVRALGATYHTGSVGQLDLV---- 233
                  689*******************************************.77775.8***8.*****6.778****************988888888.... PP

  Glu_dehyd_C  99 eemdlvvEaTGsakhafeaiealapnGvaaLlGvpeds.evevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpeslldelvtkvvdldel 195
                    +d+vvE+TG++ ++++a+++ +p+G+++L+Gv+++  ++++d+g+l+relvleN++++GsvNanrrh++ a+++La++++s+l++l+t++v+++++
   KIR63481.1 234 --PDVVVECTGAPSVVLDAMCKAGPTGIVCLTGVSSGGrTLDFDAGALNRELVLENNVVFGSVNANRRHWDLAAAALARADQSWLNALITRRVPVAAY 329
                  ..6********************************9765*********************************************************** PP

  Glu_dehyd_C 196 eeAfedddetiKtvvel 212
                  +eA++ + ++iK+v+++
   KIR63481.1 330 AEAYTPTGDDIKVVLDF 346
                  ***************98 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   1.7e-16   3.3e-13       2      97 ..      28     127 ..      27     139 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 1.7e-16
                 TEEEEEEEEEEE-HHHHHHHTTS..TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-TTBEETTTS...S-SS CS
       ADH_N   2 gevlikvkaagiCgsDlhilkgg..kelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cgeCaaCkegeenlCeeakllgvs...ldGg 94 
                 g +l++  a+giCg+D +i++g+  + ++ +  l+lGHE  G v e  ++  +l+ Gd Vv  +  +    Ca+C  ge ++C++++++  +   l+G 
  KIR63481.1  28 GAILVEALAVGICGTDHEIVEGTfgEAPPGASALVLGHESLGRVLEDPSG--TLHPGDLVVGIVRHPdPVPCANCAVGEWDMCRNGEYTEHGikgLPGF 124
                 6799******************88888888999************95554..59*******9888884577************9999988883355555 PP

                 SBS CS
       ADH_N  95 fae 97 
                   +
  KIR63481.1 125 ARD 127
                 555 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.2   8.6e-09   1.7e-05       1     123 [.     184     303 ..     184     310 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 8.6e-09
                 HHHHHHHHHHHHTT-EEEEEESSHH..HHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE. CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdssee..klelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee. 96 
                 ++Gl+a  lA   G+ v++ d+ e   k +l++ lGa++   +     v ++ +l     +dvv+ec+G+++++ +a+  + p G + + G+++g+ + 
  KIR63481.1 184 PIGLLAALLATQRGFAVHVLDRAETgpKPDLVRALGATYHTGS-----VGQL-DLV----PDVVVECTGAPSVVLDAMCKAGPTGIVCLTGVSSGGRTl 272
                 79**********************98899*******9999888.....6666.566....7*******************************6666664 PP

                 .EEHHH....HHHTT-EEEEE-SSCHHHHHHH CS
  ADH_zinc_N  97 .fdlrn....lllkeksilGsllgslreefke 123
                  fd++     l+l++  + Gs+ ++ r+ +  
  KIR63481.1 273 dFDAGAlnreLVLENNVVFGSVNAN-RRHWDL 303
                 4444445566888888889998888.776665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3   2.7e-06    0.0054       3      29 ..     181     207 ..     179     209 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.7e-06
                    --SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   3 GaGlsGlvaAylLakagfdvlllekrd 29 
                    GaG  Gl+aA l++++gf v++l++++
     KIR63481.1 181 GAGPIGLLAALLATQRGFAVHVLDRAE 207
                    ************************975 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.3   2.3e-06    0.0045       4      35 ..     177     208 ..     175     229 .. 0.81
   2 ?   -3.9   0.2         3     6e+03     316     343 ..     301     328 ..     300     331 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.3e-06
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrst 35 
                     l+ GaGp Gl++all +++G  v+++++ +t
     KIR63481.1 177 ALVTGAGPIGLLAALLATQRGFAVHVLDRAET 208
                    6899*************************886 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3
                    HHHHHHHTTSS-GGGGHHHHHHHHHHHH CS
  FAD_binding_3 316 wkLaavlkGeAkeelLdtYeeerravaq 343
                    w Laa+   +A+++ L++  ++r +va+
     KIR63481.1 301 WDLAAAALARADQSWLNALITRRVPVAA 328
                    8999988889999999999999999986 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.2e-06      0.01       3      33 ..     177     207 ..     175     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.2e-06
                  EEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like   3 viviGgGaAGlmaAisaakrgkrVlllekak 33 
                   +v G+G+ Gl+aA+ a +rg  V +l++a+
   KIR63481.1 177 ALVTGAGPIGLLAALLATQRGFAVHVLDRAE 207
                  6899************************985 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.2e-05     0.024     136     175 ..     168     207 ..     136     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
                  HCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 136 lklkllpkrivvvGgGyiGvElAaalaklgkevtlveard 175
                   + +++p+ ++v G+G+iG+  A  +++ g  v+++++++
   KIR63481.1 168 ARAEWQPQTALVTGAGPIGLLAALLATQRGFAVHVLDRAE 207
                  57899*******************************9986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.8e-05     0.075       2      33 ..     179     209 ..     178     211 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.8e-05
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkgnig 33 
                  + GaGP+Gl aa+ + + g+  + +l++++ g
   KIR63481.1 179 VTGAGPIGLLAALLATQRGF-AVHVLDRAETG 209
                  78******************.799***98765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.82   1.6e+03     130     154 ..      66      90 ..      23      91 .. 0.71
   2 ?   12.6   1.0   3.8e-05     0.075       3      32 ..     178     208 ..     176     272 .. 0.90
   3 ?   -3.3   0.0       2.6   5.1e+03      98     126 ..     300     325 ..     278     338 .. 0.55

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.82
                 TTSEEEEETTEEEEEHHHHHHHHHH CS
         DAO 130 gllgalfypdtgqvdpakltaalar 154
                 + lg ++++ +g+++p  l+ ++ r
  KIR63481.1  66 ESLGRVLEDPSGTLHPGDLVVGIVR 90 
                 4567777666699999999998865 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.8e-05
                 EEECTSHHHHHHHHHHHHTT..EEEEESSSST CS
         DAO   3 viiGGGiiGlstAyeLarrg..Vtllekgdia 32 
                 ++ G+G iGl +A+ +++rg  V +l+++ + 
  KIR63481.1 178 LVTGAGPIGLLAALLATQRGfaVHVLDRA-ET 208
                 688*************************9.43 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHTTTTEEEEEHHHHHHHST CS
         DAO  98 aldkllallleagldaelldaeevrelep 126
                  +d  +a+ l a +d ++l+a ++ ++ p
  KIR63481.1 300 HWDLAAAA-L-ARADQSWLNA-LITRRVP 325
                 33222222.2.2334467777.4666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2289.98
//
Query:       KIR63482.1  [L=320]
Description: NADH dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.7e-103  344.9  15.6   4.4e-103  344.7  15.6    1.0  1  NADHdh    NADH dehydrogenase


Domain annotation for each model (and alignments):
>> NADHdh  NADH dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.7  15.6  2.5e-107  4.4e-103       3     299 .]      11     314 ..       9     314 .. 0.96

  Alignments for each domain:
  == domain 1  score: 344.7 bits;  conditional E-value: 2.5e-107
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-SST.TTTTTHHHHHHHHHCCS-----TTS-HHHHHHHHHHHHHHHHCTTTTS-SSS...SSS--TT CS
      NADHdh   3 lllllvvlllvvalltlleRkvlAriqdRlGPnrvG.plGllqplaDalKlllKediipkkadkllfllapvlalilallafaviPfge...vladlnv 97 
                 ++ +lv++l++ +++  +e+kv+A++q RlGP+++G  +G+ q++aD++K+++Ked++p++ad+++f lapv+al++ lla++viP+g+   v  +l++
  KIR63482.1  11 VVGVLVAFLTLPLVVGQAEHKVMAHMQGRLGPMYAGgFHGWAQLVADGVKFVQKEDVTPREADRAVFRLAPVVALVPYLLALLVIPLGPgdlVGQPLDI 109
                 56778788888889999******************8578*************************************************778999999** PP

                 HHHHHHHHHHHCHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS-HHHHHHCCCTT-CCCCHHHHHHHHHHHHHHCCTCTTBT CS
      NADHdh  98 glllilalsslgvygillaGwasnskYallGalRsaaqmisyEvalglsllavvllagslslseiveaqeeiwfillqllafiifliallaetnraPFD 196
                 gl+++la++ +gv+++l+++was +kY+llG+lR aaq++ yE++l+l++ +v+++ag+lsl  ivea +  w +l+q +a+i+f++a lae+ r PFD
  KIR63482.1 110 GLFFVLAVVGVGVVAVLMSAWASANKYSLLGGLRGAAQLLGYELPLVLAAASVAMAAGTLSLPGIVEAWRPWW-LLWQAPAMIVFFVAGLAEIRRPPFD 207
                 *******************************************************************998555.6667********************* PP

                 TTTSTTSSSSCCCTT-HCHHHHHHHHHHHHHHHHHHHHHHHHCT.SS-HCCS....HHHHHHHHHHHHHHHHHHHHHC----TCHHHHHHHCCTCHHHH CS
      NADHdh 197 lpeaesELvaGfhtEYsgmkfalfflaeyanmvlvsalavllFlgGwllpfs....gllwfllKvllllflfiwiratlpRlRydqlmklgwkvllpla 291
                 +p a+sELv G++tEY+g++fa+f laey+ +v+++al+++lFlgGw++pf     g+lw+llKv+++ f++iw+r ++pRlR dql +l+w vl+p +
  KIR63482.1 208 MPVADSELVFGYMTEYTGLRFAFFLLAEYVGIVVIAALTTVLFLGGWQGPFAdaqlGWLWTLLKVFAVSFVIIWLRVSYPRLREDQLQRLCWLVLVPAS 306
                 ***************************************************9*********************************************** PP

                 HHHHHHHH CS
      NADHdh 292 lanlllta 299
                 la l+lta
  KIR63482.1 307 LAQLVLTA 314
                 *****985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.51
# Mc/sec: 1888.85
//
Query:       KIR63483.1  [L=103]
Description: hypothetical protein TK50_18690 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 761.73
//
Query:       KIR63484.1  [L=130]
Description: preprotein translocase subunit SecE [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-20   71.7   5.3    4.3e-20   71.4   5.3    1.1  1  SecE      SecE/Sec61-gamma subunits of protein translocation 


Domain annotation for each model (and alignments):
>> SecE  SecE/Sec61-gamma subunits of protein translocation complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   5.3   2.4e-24   4.3e-20       2      55 .]      73     126 ..      72     126 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 2.4e-24
                 HCHHHHHHHHHCCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SecE   2 kFfkevkaElkKVtWPtrkEllkttvvVlvfvvimglflflvDlvfsklinlll 55 
                 +Ff+ev+aEl+KV+WPtrkEll++t+vV+ fv++m  +++++D++f+k++ +++
  KIR63484.1  73 RFFREVVAELRKVIWPTRKELLTYTAVVVTFVAVMLTIVAGLDYAFAKGVLWVF 126
                 7*************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1147  (0.0639746); expected 358.6 (0.02)
Passed bias filter:                      702  (0.0391544); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 946.37
//
Query:       KIR63485.1  [L=122]
Description: hypothetical protein TK50_18810 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.046   13.5  12.3      0.069   12.9  10.9    2.0  2  DUF4190          Domain of unknown function (DUF4190)
       0.29   11.0   2.1       0.63    9.9   2.1    1.6  1  Beta-APP         Beta-amyloid peptide (beta-APP)
       0.57   10.3   2.1       0.74    9.9   2.1    1.2  1  DUF2275          Predicted integral membrane protein (DUF2275
       0.67   10.4   9.7        1.3    9.5   9.7    1.6  1  MFS_MOT1         Molybdate transporter of MFS superfamily
        1.3    8.8   3.7        1.6    8.4   1.1    2.1  2  DUF309           Domain of unknown function (DUF309)
        3.8    7.6  15.5        6.2    6.9  15.5    1.3  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> DUF4190  Domain of unknown function (DUF4190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  10.9   2.3e-05     0.069       8      61 ..      35     102 ..      28     104 .. 0.82
   2 ?    1.7   0.6     0.072   2.1e+02       3      14 ..      98     109 ..      93     115 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.3e-05
     DUF4190   8 lgilgllf....l.iitgivavilGhvAlrqirrsg.........erGkglAiaGivlGwigllllvl 61 
                 lg++g l+    + ++++ +a++l   A+r+   sg         +rG+ lA+aG+vl +++++ +++
  KIR63485.1  35 LGLMGALTglfvGgVVPATLALVLARQARREAYASGgfltgaawlRRGERLAWAGLVLVAAAVVAALV 102
                 444444444444779*******************************************9999988766 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.072
     DUF4190   3 iasLvlgilgll 14 
                 +a+Lv+g++ l 
  KIR63485.1  98 VAALVIGLVRLA 109
                 466666666543 PP

>> Beta-APP  Beta-amyloid peptide (beta-APP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.1   0.00021      0.63      26      38 ..      39      51 ..      36      52 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00021
    Beta-APP 26 GAIIGLMVGGVVI 38
                GA+ GL VGGVV 
  KIR63485.1 39 GALTGLFVGGVVP 51
                9**********95 PP

>> DUF2275  Predicted integral membrane protein (DUF2275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.1   0.00025      0.74      25      51 ..      73      99 ..      51     113 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00025
     DUF2275 25 llvrlflrlkrklalaglivlilAavg 51
                l    +lr+  +la agl+++++A+v+
  KIR63485.1 73 LTGAAWLRRGERLAWAGLVLVAAAVVA 99
                56668*******************998 PP

>> MFS_MOT1  Molybdate transporter of MFS superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   9.7   0.00043       1.3      29     108 ..      28     110 ..       2     113 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00043
    MFS_MOT1  29 ltalllsvGlmnlltglfggvPmc.hgAgglaaqyrfgartgaagillGlvllllgltg...llerllrliPksvlgglllgaG 108
                  +++++ +Glm  ltglf g  ++ + A +la q +  +  ++ g+l+G+++l  g  +    l+ +++++  +++ gl+  aG
  KIR63485.1  28 KARAVFALGLMGALTGLFVGGVVPaTLALVLARQ-ARREAYASGGFLTGAAWLRRGERLawaGLVLVAAAVVAALVIGLVRLAG 110
                 5678999*****************5555555555.6678888889999****99887665566777777777777777777776 PP

>> DUF309  Domain of unknown function (DUF309)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.17     5e+02      34      56 ..      45      67 ..      38      69 .. 0.83
   2 ?    8.4   1.1   0.00055       1.6      23      46 ..      77      98 ..      75     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.17
      DUF309 34 llqglIqlAvAlyhlrrgnvrga 56
                ++ g++ +  Al+++r+ +++++
  KIR63485.1 45 FVGGVVPATLALVLARQARREAY 67
                5668889999****999988765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00055
      DUF309 23 lWkeageperkllqglIqlAvAly 46
                +W ++g  er ++ gl+ +A+A++
  KIR63485.1 77 AWLRRG--ERLAWAGLVLVAAAVV 98
                798888..6*************97 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  15.5    0.0021       6.2      29      86 ..      27     106 ..      24     113 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0021
  Phage_holin_3_6  29 eakragsgagllgaagvlallalllllvala...................lala.a..lwlaalivaavllvlagvlalv 86 
                      +++ra+ ++gl+ga   l + +++ +++al+                   ++l     l++a l++ a+ +v+a+v +lv
       KIR63485.1  27 SKARAVFALGLMGALTGLFVGGVVPATLALVlarqarreayasggfltgaAWLRrGerLAWAGLVLVAAAVVAALVIGLV 106
                      66777777777665555555555555555543688999999888776555444333775555555444444555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1030.63
//
Query:       KIR63486.1  [L=122]
Description: hypothetical protein TK50_18815 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-08   34.5   8.6    1.3e-08   34.5   8.6    2.4  2  DUF4190          Domain of unknown function (DUF4190)
     0.0059   16.6  12.2     0.0059   16.6  12.2    2.0  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
  ------ inclusion threshold ------
      0.012   15.8   6.3      0.012   15.8   6.3    1.3  1  Phage_holin_7_1  Mycobacterial 2 TMS Phage Holin (M2 Hol) Fam
        1.6    8.9  17.8        1.9    8.7   2.6    2.3  2  Phage_holin_3_3  LydA holin phage, holin superfamily III


Domain annotation for each model (and alignments):
>> DUF4190  Domain of unknown function (DUF4190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   7.3    0.0069        31       1      30 [.      20      45 ..      20      52 .. 0.73
   2 !   34.5   8.6   2.8e-12   1.3e-08       8      61 ..      53     111 ..      47     113 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0069
     DUF4190  1 lAiasLvlgilgllfliitgivavilGhvA 30
                lAi sLv+gi++ l+    +++ + lG +A
  KIR63486.1 20 LAIGSLVAGIASALV----SLLVICLGATA 45
                7***********755....55555555554 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 2.8e-12
     DUF4190   8 lgilgllfliitgivavilGhvAlrqirrsg......erGkglAiaGivlGwigllllvl 61 
                 +g++ +l+ ++ g +av+ G +++rqirr         +G+glA+aGi +G++g++l +l
  KIR63486.1  53 AGVFAVLG-LLAGTAAVVAGALGRRQIRRPApppavrFTGRGLAVAGISCGVVGVVLSLL 111
                 45555555.69******************989999999*******************886 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6  12.2   1.3e-06    0.0059      34      98 ..      19      85 ..      16      90 .. 0.77
   2 ?   -1.1   7.6      0.43   1.9e+03      40      62 ..      95     117 ..      87     122 .] 0.43

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.3e-06
  Phage_holin_3_6 34 gsgagllgaagvlallalllllvalalala.a.lwlaalivaavllvlagvlalvglkklkkakplp 98
                     g ++g l+a+ + al++ll++++++ ++ + a ++  + +++++   +a+v++++g++++++ +p+p
       KIR63486.1 19 GLAIGSLVAGIASALVSLLVICLGATAGSQgAwAAGVFAVLGLLAGTAAVVAGALGRRQIRRPAPPP 85
                     66778888888999999999999998777544455556667888888889************88766 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.43
  Phage_holin_3_6  40 lgaagvlallalllllvalalal 62 
                      ++a+  +++++++l l++l l+l
       KIR63486.1  95 AVAGISCGVVGVVLSLLGLGLGL 117
                      33333333333333333333222 PP

>> Phage_holin_7_1  Mycobacterial 2 TMS Phage Holin (M2 Hol) Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   6.3   2.7e-06     0.012       8      65 ..      25      82 ..      21      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.7e-06
  Phage_holin_7_1  8 llGalvtallgillisGvlddesaadlidivvavvsvlvaaalavaavvlrkqikdat 65
                     l+  +++al+++l+i  +  + s  ++   v av ++l+ +a  va++  r+qi+  +
       KIR63486.1 25 LVAGIASALVSLLVICLGATAGSQGAWAAGVFAVLGLLAGTAAVVAGALGRRQIRRPA 82
                     677889**********9999*999***************9999999999999997644 PP

>> Phage_holin_3_3  LydA holin phage, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  11.5     0.016        72      32      74 ..      25      67 ..      18      80 .. 0.91
   2 ?    8.7   2.6   0.00041       1.9       3      53 ..      63     116 ..      61     118 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.016
  Phage_holin_3_3 32 lleivvSgfvGllvfllceelglsqlltlaiaglsGylGaral 74
                     l+  ++S++v+llv +l + +g ++ +++++ ++ G l+++a+
       KIR63486.1 25 LVAGIASALVSLLVICLGATAGSQGAWAAGVFAVLGLLAGTAA 67
                     566799*******************************998876 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00041
  Phage_holin_3_3   3 iivlAllGGlvsylmrakkg...rrrfsikellleivvSgfvGllvfllceelg 53 
                      ++  A+++G ++  + ++       rf+ ++l++  +++g+vG++++ll   lg
       KIR63486.1  63 AGTAAVVAGALGRRQIRRPApppAVRFTGRGLAVAGISCGVVGVVLSLLGLGLG 116
                      5667777777776655555455789**********************9987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 911.94
//
Query:       KIR63487.1  [L=104]
Description: 50S ribosomal protein L24 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-24   84.5   1.0    8.1e-24   83.8   1.0    1.3  1  ribosomal_L24  Ribosomal proteins 50S L24/mitochondrial 39S L
    2.3e-07   30.5   2.4    2.3e-07   30.5   2.4    2.3  3  KOW            KOW motif
  ------ inclusion threshold ------
      0.033   13.2   0.8      0.039   12.9   0.8    1.2  1  DUF4438        Domain of unknown function (DUF4438)
       0.12   12.8   0.9       0.25   11.7   0.0    1.8  2  eIF3g          Eukaryotic translation initiation factor 3 sub
       0.53   10.7   6.2        6.1    7.3   3.2    2.9  2  GTP_EFTU_D2    Elongation factor Tu domain 2


Domain annotation for each model (and alignments):
>> ribosomal_L24  Ribosomal proteins 50S L24/mitochondrial 39S L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   1.0   2.3e-27   8.1e-24       1      64 [.      38     103 ..      38     104 .] 0.92

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 2.3e-27
  ribosomal_L24   1 vnvvkkhvkp..sqqneq.GgiiekEapIhvSnVmlvdpkcgkptrvgfrlkedgkkvRvskksgee 64 
                    vn vkkh++   +q++ + Ggi+++EapIhvSnVm+vd+ +g ptrvg+r+ ++g+kvR+++++g++
     KIR63487.1  38 VNRVKKHTRIstTQRGAKtGGIVTQEAPIHVSNVMVVDS-DGNPTRVGYRIDDNGQKVRIARSTGKD 103
                    8********9656789999*******************6.5********99999***********97 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   2.4   6.3e-11   2.3e-07       1      32 []       5      36 ..       5      36 .. 0.97
   2 ?   -1.5   0.1       0.8   2.9e+03      18      25 ..      72      79 ..      70      83 .. 0.61
   3 ?   -2.6   0.0       1.7   6.1e+03       2       6 ..      91      95 ..      86      96 .. 0.47

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 6.3e-11
                TTSEEEESSSTTTTCEEEEEEEETTTTEEEEE CS
         KOW  1 pGdhVkVvsGphkGktGkVvkvdqhkvrVfvd 32
                +Gd+V V++G++kG++GkV   ++  ++V+v+
  KIR63487.1  5 KGDTVVVIAGKDKGAKGKVIAAYPRQDKVLVE 36
                7****************************997 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.8
                EEEEEETT CS
         KOW 18 kVvkvdqh 25
                +Vv+ d +
  KIR63487.1 72 MVVDSDGN 79
                67776665 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.7
                TSEEE CS
         KOW  2 GdhVk 6 
                G+ V+
  KIR63487.1 91 GQKVR 95
                34444 PP

>> DUF4438  Domain of unknown function (DUF4438)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.8   1.1e-05     0.039      62     103 ..       6      47 ..       4      76 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.1e-05
                 T-EEEE-SSTTTT-EEEEEEEETTTTEEEEE--HHHHTT--T CS
     DUF4438  62 GneakvvsGeakgakGvvtGkhggiehvlvdfdeevleklai 103
                 G +++v++G+ kgakG v+    + ++vlv+  + v+++  i
  KIR63487.1   6 GDTVVVIAGKDKGAKGKVIAAYPRQDKVLVEGVNRVKKHTRI 47 
                 7899**************************988777776555 PP

>> eIF3g  Eukaryotic translation initiation factor 3 subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.43   1.6e+03      26      32 ..      35      41 ..       4      61 .. 0.50
   2 ?   11.7   0.0   7.1e-05      0.25       3      32 ..      71     100 ..      69     103 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.43
       eIF3g 26 vkvtrki 32
                v  ++++
  KIR63487.1 35 VEGVNRV 41
                2222222 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 7.1e-05
       eIF3g   3 eiiededgiktvieykinedgkkvkvtrki 32 
                 +++ d+dg  t + y+i+++g+kv++ r +
  KIR63487.1  71 VMVVDSDGNPTRVGYRIDDNGQKVRIARST 100
                 567899********************9875 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.2    0.0017       6.1      12      39 ..       2      27 ..       2      68 .. 0.74
   2 ?   -0.1   0.0      0.36   1.3e+03      16      27 ..      91     100 ..      89     103 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0017
                 EEETTEEEEEEC.TCTTSEEEEEEEEEEE CS
  GTP_EFTU_D2 12 tlkkGdevrilg.ndtskkeivtrissle 39
                 ++kkGd+v+++  +d++ k   +++ + +
   KIR63487.1  2 KVKKGDTVVVIAgKDKGAK---GKVIAAY 27
                 58********999999888...5554444 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.36
                  TEEEEEECTCTT CS
  GTP_EFTU_D2  16 Gdevrilgndts 27 
                  G++vri +  + 
   KIR63487.1  91 GQKVRIAR--ST 100
                  99999954..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 694.53
//
Query:       KIR63488.1  [L=125]
Description: 50S ribosomal protein L18 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-47  161.2   3.7    1.2e-47  161.0   3.7    1.0  1  Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. a
  ------ inclusion threshold ------
      0.092   12.8   0.1       0.13   12.3   0.1    1.3  1  DNA_photolyase  DNA photolyase


Domain annotation for each model (and alignments):
>> Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.0   3.7   1.4e-51   1.2e-47       2     116 .]      11     125 .]      10     125 .] 0.98

  Alignments for each domain:
  == domain 1  score: 161.0 bits;  conditional E-value: 1.4e-51
                     -CCHHHCHHHHHHTTT--TTSSS-EEEEEE-SS-EEEEEE-TTT--EEEEECS-SCCCTS-SSSCHHHHHHHHHHHHHHHCHHCHTC-EE--TTS CS
  Ribosomal_L18p   2 kkkearkrRhkRirkklsgtaerprlvvfrsnrhiyaQviddvkgktlasastlekelklkstknkeaakkvgeliAerakekgiekvvfDrggy 96 
                     k++  r+rRh R+rk++sgt erprlvv+rs rhi+aQv+dd+kg+tlasastl+++++++++++++ a kvg+l+Aerak++g++kvvfDrgg+
      KIR63488.1  11 KRAVGRARRHFRVRKNVSGTPERPRLVVTRSLRHIVAQVVDDTKGHTLASASTLDASVRGTEGDKSALAGKVGALLAERAKAAGVSKVVFDRGGN 105
                     577789***************************************************************************************** PP

                     SS-CHHHHHHHHHHCTSSB- CS
  Ribosomal_L18p  97 kYhGrvaalAdaaReaGlkf 116
                     +Y+GrvaalAdaaReaGl+f
      KIR63488.1 106 RYAGRVAALADAAREAGLEF 125
                     ******************98 PP

>> DNA_photolyase  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.4e-05      0.13      52     120 ..      58     125 .]      36     125 .] 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.4e-05
                     HHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHCTECEEEEE---SHHHHHHHHHHHHHHHHCTSEE CS
  DNA_photolyase  52 lesLadLdeeLrelgirLvvrrgdpadvlpelakelgasavvanreyepdererdeavkealrkagiev 120
                     l+s   Ld++ r   ++   + g++ + l+e ak +g+s+vv++r   +++ +  +a+++a+r+ag+e+
      KIR63488.1  58 LASASTLDASVRGTEGDKSALAGKVGALLAERAKAAGVSKVVFDRGGNRYAGR-VAALADAAREAGLEF 125
                     6667788888888889999999**************************99986.568999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 840.14
//
Query:       KIR63489.1  [L=201]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-26   90.9   0.0    7.6e-26   90.7   0.0    1.0  1  MTS              Methyltransferase small domain
    3.3e-05   24.5   0.0    4.8e-05   24.0   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    0.00033   20.5   0.0     0.0015   18.4   0.0    1.8  1  Methyltransf_23  Methyltransferase domain
    0.00066   20.3   0.0     0.0013   19.3   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    0.00078   19.3   0.0     0.0011   18.7   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
     0.0022   18.0   0.0      0.016   15.2   0.0    1.9  2  Methyltransf_18  Methyltransferase domain
     0.0023   17.4   0.0     0.0031   16.9   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0097   16.6   0.0      0.017   15.9   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
       0.13   12.0   0.0       0.18   11.5   0.0    1.2  1  Met_10           Met-10+ like-protein
       0.17   11.8   0.0       0.23   11.4   0.0    1.1  1  Methyltransf_32  Methyltransferase domain


Domain annotation for each model (and alignments):
>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0   4.2e-29   7.6e-26       2     169 .]      29     198 ..      28     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 4.2e-29
                 EEEEEETTSTTTTS--HHHHHHHHHCHCC...TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTT CS
         MTS   2 ltlktlpgvFskdklDkGsklLletlpke...lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleevee 95 
                 +tl+++ gvFs+d+lD G+++Ll++ +     ++g++lDlGcG+G+++++la   p a+v +vdv+ rA +++ +n+e+ +++  v+v a d++   ++
  KIR63489.1  29 YTLTSAGGVFSADRLDPGTAVLLRKADLPapdAAGNLLDLGCGFGPIACVLAGSAPAATVWAVDVNERARALTAANAERVGAAdrVRVAAPDAV--PDD 125
                 7899*******************97555444899**********************************************99955666665555..445 PP

                 S-EEEEEE---STTTCHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH...HHHHHS--EEEEEESSEEEEE CS
         MTS  96 kkfdlivsNPPfhagkatelavaeeliaeAkeaLkegGeLliVanrklgyesl...leelfgnvevvaktkkfkvlk 169
                   f  + sNPP++ gk+      +el+     +L+++G  ++V+ r+lg +sl   l+e   +v   a++k+++vl+
  KIR63489.1 126 VTFAQLWSNPPIRIGKE----GLHELLLRWLPRLAPDGVAWLVVARHLGGDSLhrwLTEQGWQVGRHASQKGYRVLR 198
                 58***************....89999999999*****************9999888999999999999*****9985 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   2.7e-08   4.8e-05       2      59 ..      66     123 ..      65     159 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2.7e-08
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlp 59 
                      LdlGcG G ++  la   ++a+v++vD++e++ + ++++ae+ g+  +++++  +++p
       KIR63489.1  66 LDLGCGFGPIACVLAGSAPAATVWAVDVNERARALTAANAERVGAADRVRVAAPDAVP 123
                      9**************99989********************988874455555444554 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   8.1e-07    0.0015      18      96 ..      57     136 ..      42     199 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.1e-07
  Methyltransf_23  18 pklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae...........kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvp 96 
                      p  +a g++Ld+GcG G  + vl+      +v +vD +++a ++ +                          a p++ +d ++  ++  + p
       KIR63489.1  57 PAPDAAGNLLDLGCGFGPIACVLAGSAPaaTVWAVDVNERARALTAanaervgaadrV------------RVAAPDAVPDDVTFAQLWSNPP 136
                      3467889**********7777776664336999****998777753444333333330............3334555666666666655544 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   7.4e-07    0.0013       1      46 [.      66     115 ..      66     132 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 7.4e-07
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-..EEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl..kve 46 
                      Ld+GcG G +a+ la  +  a+v +vD+++++++l  ++a++ g   +v+
       KIR63489.1  66 LDLGCGFGPIACVLAGSApaATVWAVDVNERARALTAANAERVGAadRVR 115
                      8**************55567*************88888887777644333 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.3e-07    0.0011       3      54 ..      61     111 ..      59     121 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6.3e-07
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld 54 
                       + ++lDlGCG G ++ +la    p a+v  +D +e+a  l  +na++ g  
       KIR63489.1  61 AAGNLLDLGCGFGPIACVLA-GSAPAATVWAVDVNERARALTAANAERVGAA 111
                      67799***************.66799**********9988888888877765 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.8e-06     0.016      17      71 ..      64     118 ..      56     124 .. 0.91
   2 ?    0.4   0.0       0.3   5.4e+02     112     136 ..     162     186 ..     145     193 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.8e-06
  Methyltransf_18  17 rvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrl 71 
                      +++D G+  g +++ l+ +  a +v a+D+ne + +   +n+e+ g  d+++v  
       KIR63489.1  64 NLLDLGCGFGPIACVLAGSAPAATVWAVDVNERARALTAANAERVGAADRVRVAA 118
                      789*******************************************999998865 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.3
  Methyltransf_18 112 klilqpnseaeelRkylvengfkie 136
                       l++  +   ++l ++l+e+g+++ 
       KIR63489.1 162 WLVVARHLGGDSLHRWLTEQGWQVG 186
                      5666667777899*********986 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.7e-06    0.0031     164     228 ..      64     125 ..      49     148 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.7e-06
        PrmA 164 evlDvGtGSG.iLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellkeekad 228
                 ++lD+G+G G i  + a    a++v avD++e A   +++Nae+ + +++++va+++ +++    d
  KIR63489.1  64 NLLDLGCGFGpIACVLAGSAPAATVWAVDVNERARALTAANAERVGAADRVRVAAPDAVPD----D 125
                 789*****994444667788899****************************9988877776....3 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   9.3e-06     0.017       1      57 [.      66     120 ..      66     135 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.3e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnveleald 57 
                      L++GcG G ++ +l+ + p +++ +vD++++a   a +  ++++   +++v++ a d
       KIR63489.1  66 LDLGCGFGPIACVLAGSAPAATVWAVDVNERAR--ALTAANAERVGAADRVRVAAPD 120
                      8*******************************9..4444444444455555555554 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0001      0.18     105     159 ..      66     120 ..      60     130 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
                 EETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES- CS
      Met_10 105 vdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileD 159
                 +d+  G Gp a ++a  + a +v+a+d+n ++  +   n ++   +++v++   D
  KIR63489.1  66 LDLGCGFGPIACVLAGSAPAATVWAVDVNERARALTAANAERVGAADRVRVAAPD 120
                 68889***********9**********************9999999999877666 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013      0.23      25      81 ..      61     113 ..      48     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
  Methyltransf_32  25 galtvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkr 81 
                      +a +++D+G+G g  + vla   +     v ++d++e+  + + + ae++g  +++r
       KIR63489.1  61 AAGNLLDLGCGFGPIACVLAG--SAPAATVWAVDVNERARALTAANAERVG--AADR 113
                      567899**************9..44689*********************99..4454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1358.11
//
Query:       KIR63490.1  [L=286]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-24   86.0  17.4    4.4e-24   85.2  17.4    1.3  1  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.83    9.4   4.8       0.13   11.9   0.3    2.0  3  Neurensin     Neurensin


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2  17.4   4.9e-28   4.4e-24       1     172 [.     106     269 ..     103     279 .. 0.90

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 4.9e-28
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   g+llG+ +a   ++++ ++++pl  ++ ++P + l++llv       +lg++  p++++++l  +++++l ++ +l + p+dl e+ r l as wq 
    KIR63490.1 106 GVLLGLSLA--ASSTVERMFTPLLVAVNAVPKITLGPLLV------VALGWGQKPILTMVFLLCFFPIVLSTATGLTTTPSDLAELVRSLNASWWQA 194
                   678888888..99***************************......99************************************************* PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlva 172
                   frkv++P+alp i+ gl +a++++  gav+ ef ++ +Glg+++++   + d++ + ++++l++++++ll ++++
    KIR63490.1 195 FRKVRFPAALPQIFVGLKVAMPLAAIGAVIGEFQAGESGLGYVITQYAGIGDTATAWAAIMLVALVSILLYSALV 269
                   ******************************************************777444444444444444333 PP

>> Neurensin  Neurensin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   1.5e-05      0.13      49     119 ..      39     118 ..      27     124 .. 0.81
   2 ?   -2.9   0.0      0.56     5e+03      28      56 ..     183     211 ..     169     221 .. 0.66
   3 ?   -3.3   0.2      0.73   6.6e+03     100     114 ..     254     268 ..     243     274 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.5e-05
   Neurensin  49 tlvlllGvtallvGylvprrlelv.......ksegelvvvDkqaiefnnaLdtl..klaGavllclGglllalsllvpal 119
                 +l+  +G+ +    + +++rlelv       ++     ++Dk    +++ Ldt+   l+G+ l++++g+ll lsl+ ++ 
  KIR63490.1  39 LLLPGAGLLVAFAVWWLTARLELVhpaalptPGSVLSAFTDKPDRMLEHTLDTMleILIGFALSAVAGVLLGLSLAASST 118
                 555556666666667778999999999998777777789*************9844599****************98765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.56
   Neurensin  28 llqrakqksesllwkvslvvgtlvlllGv 56 
                 l+++ +++++ ++ kv +  ++  + +G+
  KIR63490.1 183 LVRSLNASWWQAFRKVRFPAALPQIFVGL 211
                 44555556888888887766666666665 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.73
   Neurensin 100 avllclGglllalsl 114
                 ++l++l ++ll  +l
  KIR63490.1 254 IMLVALVSILLYSAL 268
                 455555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1967.92
//
Query:       KIR63491.1  [L=123]
Description: nitrite reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-36  122.6   0.0    6.5e-36  122.4   0.0    1.0  1  Rieske_2  Rieske-like [2Fe-2S] domain
    0.00012   22.0   0.0    0.00016   21.5   0.0    1.2  1  Rieske    Rieske [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   0.0   7.2e-40   6.5e-36       2     104 .]      17     118 ..      16     118 .. 0.99

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 7.2e-40
                 EEEEEECCCS-TTB-EEEEETTEEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-BBSS-TTSB-BEE-EEESTSE CS
    Rieske_2   2 wvpvckledlvketgvaalvdgkqvalfrlekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGecledeevslkvypvrvedgk 100
                 w pvc+le+l +e+gvaalvdg qvalfr+  +e++A+dnldp+ +a+vlsrG+vg+++g+++vasPl+kq++dL+tG cl+ + v+++ ++vr++dg 
  KIR63491.1  17 WSPVCPLEKLEPERGVAALVDGAQVALFRT-GDELFALDNLDPVGGAYVLSRGIVGSRGGTPTVASPLHKQVYDLRTGACLDLPGVAVPRHDVRCRDGL 114
                 ******************************.99****************************************************************** PP

                 EEEE CS
    Rieske_2 101 vevr 104
                 vevr
  KIR63491.1 115 VEVR 118
                 **96 PP

>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.8e-08   0.00016       2      82 ..      17     101 ..      16     108 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.8e-08
                 EEEEEEGGGC-TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGG.SEEE...TT.EEE-TTT--EEE.TTSBEEE-TTH CS
      Rieske   2 wvavakesdvpegdpltvkvggeplvvlrdedgevyAlsdvCtHrgaplse.gkid...ekgvleCpcHgwayd.adGkvikgPap 82 
                 w +v++ ++++++  ++  v g +++++r+ ++e++Al++  +  ga + + g +    +++++  p+H+ +yd ++G +++ P  
  KIR63491.1  17 WSPVCPLEKLEPERGVAALVDGAQVALFRT-GDELFALDNLDPVGGAYVLSrGIVGsrgGTPTVASPLHKQVYDlRTGACLDLPGV 101
                 899********88888889**********6.*****************85546663455778*******************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       196  (0.010932); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 896.12
//
Query:       KIR63492.1  [L=843]
Description: nitrite reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-48  163.5   0.9    9.9e-48  162.9   0.9    1.2  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.5e-19   70.0   0.0    2.5e-19   69.3   0.0    1.3  1  NIR_SIR         Nitrite and sulphite reductase 4Fe-4S domain
    1.3e-17   63.9   5.2    4.5e-12   46.1   3.3    2.8  2  Fer2_BFD        BFD-like [2Fe-2S] binding domain
    1.4e-16   60.8   0.2    3.2e-13   50.1   0.1    2.6  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    2.3e-10   40.2   0.0    5.2e-10   39.0   0.0    1.7  1  NIR_SIR_ferr    Nitrite/Sulfite reductase ferredoxin-like hal
      7e-08   32.3   0.0    1.9e-07   30.9   0.0    1.7  1  Rubredoxin_C    Rubredoxin NAD+ reductase C-terminal domain
    0.00015   20.8   0.5    0.00038   19.4   0.0    1.7  2  Trp_halogenase  Tryptophan halogenase
     0.0038   16.6   0.1       0.45    9.7   0.0    2.2  2  Amino_oxidase   Flavin containing amine oxidoreductase
  ------ inclusion threshold ------
      0.047   12.8   0.0      0.082   12.0   0.0    1.3  1  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
       0.19   11.7   8.9        1.8    8.6   0.2    4.0  4  NAD_binding_9   FAD-NAD(P)-binding
       0.35    9.9   0.6        3.7    6.5   0.8    2.3  3  GIDA            Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   0.9   6.1e-51   9.9e-48       4     278 ..       2     273 ..       1     290 [. 0.92

  Alignments for each domain:
  == domain 1  score: 162.9 bits;  conditional E-value: 6.1e-51
                  EEE--SHHHHHHHHHHHH....HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH..HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCE CS
                  xxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   4 vviGgGpAGlaaaltlaq....agakvtlvelegtclnggcllskallgvaedaeias..evvkklnqgielllgeevvkidpgkkkvklekkkegde 95 
                  vviG G+ G ++ + l++       +vt++ +e+   ++++ ls  + gv++++  ++  +       g+el+lge++++id+++ +v++++      
   KIR63492.1   2 VVIGNGMVGQRFTEALRArdtdRRWQVTVLAEERRPAYDRVRLSAFFDGVSAEELNLHtpD------DGVELRLGEPATAIDRQR-RVVVTA-----A 87 
                  9***********99999988877999****999999***************9998777653......59*************999.666633.....2 PP

                  EEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEE.EEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Pyr_redox_2  96 ekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkri.vvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaalee 191
                   +  yd++vlAtGs p+ +++ G    ++++ rtld+ e ++++ + +r+ +v+GgG+ G+E A al+ lg  +++ve ++rl+  ++d++ +a+l++
   KIR63492.1  88 GEHPYDAVVLATGSYPFVPPVAGRDLPGVFVYRTLDDLESIREHARGRRVgAVIGGGLLGLEAANALRLLGLATHVVEFAPRLMpVQVDEAGGAMLRR 185
                  357*********************88888999***************9999*********************************999*********** PP

                  HHHHTTEEEEESCEEEEEEETTE.EEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGC CS
                  xxxxxxxxxxxxxxxxxxxxxxx.xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 192 alekeGvevklgtsvkeidgnge.kle.vvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDva 278
                  ++e+ Gv+++lg   +++++  +  +  ++l+dg+++da+lvvva+G+rp+++l+ +++glel +rgg++vd ++rt ++ i+a+G +a
   KIR63492.1 186 YVEELGVTTHLGVATTALRPGADgAVAaLELSDGRTVDAELVVVAAGIRPRDDLA-RAAGLELGPRGGVLVDATCRTGDERIWAVGECA 273
                  *********************9985556***************************.********************************9 PP

>> NIR_SIR  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   1.5e-22   2.5e-19       2     151 ..     612     748 ..     611     754 .. 0.94

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 1.5e-22
                 SSSCCCCCCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   2 ganlrnvtlcpgaglceeallDttelakaiedelepeygetylPrKfKiavsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakktsa 100
                 g+ lr+v++c+g ++c+  + D+  la a+e     +y+  + P+K+K avsgc + c++++++D+g++++       g+n++vGG+ g +++ +  +a
  KIR63492.1 612 GKALRTVKSCVGETWCRYGVQDSVGLAVALE----LRYRGLRAPHKLKSAVSGCARECAEARSKDFGIIATDT-----GWNLYVGGNGGFRPRHADLFA 701
                 7899***************************....9*************************************.....********************* PP

                 EEEEEEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHH..HHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
     NIR_SIR 101 rlgfvpeeevlevveaivevyrdhgdrknrkkeRlkylverl..GvekFrekv 151
                   + + + e++++++  + +y     r++ + +R + ++e +  G++++r+++
  KIR63492.1 702 --TDLSTAELIPLIDRFLMYYI----RTADRLQRTAAWIEAMegGLDHLRAVI 748
                 ..6777777*************....**************9976777777766 PP

>> Fer2_BFD  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   3.3   2.8e-15   4.5e-12       2      50 ..     408     455 ..     407     456 .. 0.97
   2 !   16.7   0.0   4.2e-06    0.0068       3      50 ..     466     513 ..     465     514 .. 0.93

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 2.8e-15
    Fer2_BFD   2 VCrCegvtegeIrdairraglttveevkrrtkagtgCggCrpaieeiLa 50 
                 VC+C++vt+++I +ai + g  +v ++k+ t+agt Cg+C+p+++++L+
  KIR63492.1 408 VCSCNAVTRDDIDAAI-AGGCADVPALKACTRAGTSCGSCVPMLKQLLD 455
                 9***************.988***************************97 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 4.2e-06
    Fer2_BFD   3 CrCegvtegeIrdairraglttveevkrrtkagtgCggCrpaieeiLa 50 
                 C+ ++++++e+ d++r  g++t+  + ++ + g gC  C+p ++ iLa
  KIR63492.1 466 CEHFDLSRQELFDVVRVRGIRTFSRLIAEHGRGRGCDICKPVVASILA 513
                 666899*********7789****************************8 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0028       4.5       2      71 ..       1      81 [.       1      88 [. 0.74
   2 !   50.1   0.1   1.9e-16   3.2e-13       3      80 ..     139     218 ..     138     219 .. 0.96

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0028
                EEEECSSHHHHHHHHHH....HHTTSEEEEEESSSSSS.......TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETT CS
   Pyr_redox  2 vvvvGgGyiglElAgal....aelgkkVtvversdkll.......rllDeeaskilqeklekngievllntkveeiegsed 71
                +vv+G G +g  + +al    ++ + +Vtv+  + ++          +D   +++l  +  + g+e++l++ +++i+ + +
  KIR63492.1  1 MVVIGNGMVGQRFTEALrardTDRRWQVTVLAEERRPAydrvrlsAFFDGVSAEELNLHTPDDGVELRLGEPATAIDRQRR 81
                69***************5555555579999987755432222166778888888888888888999999999988886655 PP

  == domain 2  score: 50.1 bits;  conditional E-value: 1.9e-16
                 EEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.EEEEEEET CS
   Pyr_redox   3 vvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegsedg.vesvklkd 80 
                 +v+GgG++glE+A+al+ lg  ++vve +++l+  + De+ +++l++++e++g++ +l+  +++++  +dg v +++l+d
  KIR63492.1 139 AVIGGGLLGLEAANALRLLGLATHVVEFAPRLMpVQVDEAGGAMLRRYVEELGVTTHLGVATTALRPGADGaVAALELSD 218
                 7********************************99************************************999999876 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   3.2e-13   5.2e-10       3      67 ..     540     601 ..     538     603 .. 0.96

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 3.2e-13
  NIR_SIR_ferr   3 qkdgkgyymvrlrvpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeLa 67 
                   q+dg   y+v  r+p+G it+e l  + ++a+++   + ++T  Q + l+g + ++l++i+++L 
    KIR63492.1 540 QRDGS--YSVVPRIPGGEITPEKLIVIGQVAQEFK-LYTKITGGQRIDLFGARVDQLPQIWRRLV 601
                   89988..8***************************.**************************995 PP

>> Rubredoxin_C  Rubredoxin NAD+ reductase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   1.1e-10   1.9e-07       2      63 ..     310     374 ..     310     377 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.1e-10
                   --EEEETTEEEEEES--TT---.SEEEEEE-SS-..EEEEEEETT..EEEEEEEES-HHHHHHHH CS
  Rubredoxin_C   2 vtiLkvsgidlfSvGdieeeek.aeelveedkekgkYkklfikng..klvGAiliGDtkesaklk 63 
                   +t+Lk +g+d+ S+Gd  +  + +  ++  d ++++Y kl++ ++   l G +l+GD + +++l+
    KIR63492.1 310 ATKLKLLGVDVASFGDAHGTTDgSLDVTFTDPATRSYAKLVLSDDakTLLGGVLVGDASAYPTLR 374
                   589*****************999999*****************97447***********998876 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.53   8.6e+02       4      32 ..     140     165 ..     139     179 .. 0.72
   2 !   19.4   0.0   2.3e-07   0.00038     158     210 ..     181     234 ..     172     237 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.53
                     EE--SHHHHHHHHHHHHHTTTSSEEEEEE CS
  Trp_halogenase   4 ivGGGtaGwlaAaalakalkgklevtlve 32 
                     ++GGG  G  aA+al+  +   l+  +ve
      KIR63492.1 140 VIGGGLLGLEAANALRLLG---LATHVVE 165
                     89*************9877...5555555 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.3e-07
                     HHHHHHHHHCT-EEEE--EEEEEE-T.TS-EEEEEETTS-EEE-SEEEE-SGGG CS
  Trp_halogenase 158 kfLrrvaearGvtrvegkvvevqlde.dgrveslrledgreveadlfiDcsGfr 210
                      +Lrr+ e+ Gvt   g  +++     dg+v++l+l+dgr+v+a+l++ + G r
      KIR63492.1 181 AMLRRYVEELGVTTHLGVATTALRPGaDGAVAALELSDGRTVDAELVVVAAGIR 234
                     58***************9988776667************************988 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.011        19     220     263 ..      62     102 ..      43     113 .. 0.80
   2 !    9.7   0.0   0.00028      0.45     211     262 ..     181     233 ..     142     242 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.011
                    TTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S-HH CS
  Amino_oxidase 220 lrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvplg 263
                      g+++rl+++ + i+r++  v +    ge+ ++DaVv+++  +
     KIR63492.1  62 DDGVELRLGEPATAIDRQRRVVVT--AAGEH-PYDAVVLATGSY 102
                    679**************5444333..47887.********9765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00028
                    HHHHHHHHTTTTEEEETSEEEEEEEEETTC..EEEEETTSTEEEESEEEE-S-H CS
  Amino_oxidase 211 qlpealaeelrgldirlntrVkeikregdg..vtvtledgevveaDaVvvTvpl 262
                    ++ ++  e ++g++ +l+   + ++ ++dg   +++l+dg++v+a  Vvv++ +
     KIR63492.1 181 AMLRRYVE-ELGVTTHLGVATTALRPGADGavAALELSDGRTVDAELVVVAAGI 233
                    44555555.7****************77777799*****************976 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     5e-05     0.082     150     210 ..      93     154 ..      74     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5e-05
  K_oxygenase 150 rnlvlgvGtepkiPevleklegkervvHsseylerkeellakkri.aVvGsGqSaaeifedl 210
                   ++vl++G+ p +P+v+ +  +   v+ + + le+++e+++++r+ aV+G+G  + e ++ l
   KIR63492.1  93 DAVVLATGSYPFVPPVAGRDLPGVFVYRTLDDLESIREHARGRRVgAVIGGGLLGLEAANAL 154
                  579**************998877888999999*************89*****9998877665 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.16   2.6e+02       1      32 [.       2      33 ..       2      68 .. 0.83
   2 ?    4.3   0.1     0.022        35     132     154 ..      78     100 ..      70     102 .. 0.81
   3 ?   -1.5   0.5       1.3   2.2e+03       1      16 [.     139     154 ..     139     166 .. 0.88
   4 ?    8.6   0.2    0.0011       1.8     111     154 ..     186     232 ..     175     234 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.16
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlf.d 32
                   +++G G+ G  ++e+L ar +++++ ++t+  +
     KIR63492.1  2 VVIGNGMVGQRFTEALRAR-DTDRRWQVTVLaE 33
                   699*************999.5999999998743 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.022
  NAD_binding_9 132 dgqavlladgaslaadaVvLAlG 154
                    ++++v+ +   ++ +daVvLA+G
     KIR63492.1  78 RQRRVVVTAAGEHPYDAVVLATG 100
                    4567888999999*********9 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.3
  NAD_binding_9   1 aivGaGprGlavlerL 16 
                    a++G+G  Gl ++++L
     KIR63492.1 139 AVIGGGLLGLEAANAL 154
                    89********999877 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0011
  NAD_binding_9 111 lpegvtvevhra.evvdleeradgq..avlladgaslaadaVvLAlG 154
                    + e++ v+ h +   ++l++ adg+  a+ l+dg++++a+ Vv+A G
     KIR63492.1 186 YVEELGVTTHLGvATTALRPGADGAvaALELSDGRTVDAELVVVAAG 232
                    44445566664426679*******6558999**************99 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.36   5.8e+02     126     151 ..      78     102 ..      22     112 .. 0.67
   2 ?    6.5   0.8    0.0023       3.7       4      28 ..     140     164 ..     138     180 .. 0.89
   3 ?   -1.8   0.0      0.78   1.3e+03     126     149 ..     209     232 ..     181     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.36
                 TEEEEEEETTS-EEEECEEEE--TT- CS
        GIDA 126 kkvkgvvtedgetikakavviatGtf 151
                 ++ ++vvt+ ge+   +avv+atG++
  KIR63492.1  78 RQRRVVVTAAGEH-PYDAVVLATGSY 102
                 4555566666655.4579******97 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0023
                 EE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   4 ViGgGhAGceAAlaaarlGakvlLi 28 
                 ViGgG+ G+eAA a+  lG+ +  +
  KIR63492.1 140 VIGGGLLGLEAANALRLLGLATHVV 164
                 9***************999999876 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.78
                 TEEEEEEETTS-EEEECEEEE--T CS
        GIDA 126 kkvkgvvtedgetikakavviatG 149
                 + v+++ ++dg+t+ a+ vv+a+G
  KIR63492.1 209 GAVAALELSDGRTVDAELVVVAAG 232
                 77889999**************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 5692.52
//
Query:       KIR63493.1  [L=97]
Description: hypothetical protein TK50_19155 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0022   18.4   0.1     0.0046   17.4   0.1    1.5  1  PemK_toxin  PemK-like, MazF-like toxin of type II toxin-antit


Domain annotation for each model (and alignments):
>> PemK_toxin  PemK-like, MazF-like toxin of type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   2.5e-07    0.0046       3     109 ..       5      93 ..       3      94 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.5e-07
                 TEEEEEEE-S--TTS--SEEEEEE-S-HHHHCH..SEEEEEEEESSSTSSGCSTTEEEE-HHHCSSSSSSSSEEEECCCEEEEEGGGEEEEEEE--HHH CS
  PemK_toxin   3 GeIvlvdldpsrgseqgkrRpvvVvsndafnek..ntvivvpltskdkdkkklpfhveleseildlngldkdswvkldqirtvdkarlrkkigklsred 99 
                 Ge++ ++         + +R+ +V+s+d++n +  + v+v+ +   +  ++  p+ v++ +           ++v+ d + +  k+ + + +   ++++
  KIR63493.1   5 GEVWRISG--------ARERLGLVISSDVYNSTdvPIVMVAEVVEAALLRD-SPLAVPMGG-----------HVVMPDRLSSPMKQWFTECVDVADADT 83 
                 55555555........236************87677999999997776554.499999963...........69************************* PP

                 HHHHHHHHHH CS
  PemK_toxin 100 laevqralak 109
                 +++v+ral++
  KIR63493.1  84 MQRVARALRI 93 
                 *******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 700.30
//
Query:       KIR63494.1  [L=518]
Description: hypothetical protein TK50_19205 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-34  117.1   3.0    1.9e-33  115.6   3.0    1.8  1  Abhydrolase_8  Alpha/beta hydrolase
     0.0086   15.4   0.0       0.02   14.2   0.0    1.6  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.056   13.1   0.1       0.16   11.6   0.0    1.7  2  Abhydrolase_1  alpha/beta hydrolase fold
      0.098   12.9   0.9       0.34   11.2   0.9    2.0  1  WXG100         Proteins of 100 residues with WXG


Domain annotation for each model (and alignments):
>> Abhydrolase_8  Alpha/beta hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   3.0   4.3e-37   1.9e-33       2     173 ..     279     445 ..     278     449 .. 0.91

  Alignments for each domain:
  == domain 1  score: 115.6 bits;  conditional E-value: 4.3e-37
  Abhydrolase_8   2 pagkvlaavavGdldrAerVsVtvpGvdttlrrtlatmvaearglraeaaaaeeaagkpesvAviAWlgYeaPagaskevatddrAaagAaeLnal 97 
                      g+++ +va+Gd+drA+rV   vpG+ + l  ++++  ++ar +++ a     a  +++s+A++ Wl+Y+aP + + e++  ++A+++ + L+++
     KIR63494.1 279 TGGEGRTVVALGDPDRADRVLTYVPGMTAGLADATGELGRAARVQARCA-----ALDPTASTAAVLWLDYDAP-DFLHEAVLPHQARDAGPALHRF 368
                    5678999************************999988877776554433.....3446789************.9********************* PP

  Abhydrolase_8  98 lrdlrats.vpgqhlallgHSYGSlvaslAlddaaseVsdvvlyGSPGleaesaakLgledarvfvmrgadDlienv 173
                     ++lrat  +   + ++lgHSYGSlv + A+ d +   +  v++GSPG++++ a  L l +++v++ +++dD i+  
     KIR63494.1 369 QEGLRATHeGQPARQTVLGHSYGSLVVGTAARDHGLAADALVFVGSPGVGVDRADGLRLPSGEVWASTAPDDAIRLA 445
                    *******98888899***********************************************************866 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.5e-06      0.02      64     109 ..     367     414 ..     363     438 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.5e-06
  Hydrolase_4  64 afvekvkeehpel..plfllGhSmGGliallyllrypdkvaglilsaP 109
                   f e ++++h+++  + ++lGhS G+l++ +++ ++    ++l+++++
   KIR63494.1 367 RFQEGLRATHEGQpaRQTVLGHSYGSLVVGTAARDHGLAADALVFVGS 414
                  566778888999866789********************999***9963 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.5   6.6e+03      71     100 ..     268     297 ..     259     303 .. 0.78
   2 ?   11.6   0.0   3.5e-05      0.16      75     117 ..     383     423 ..     378     449 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.5
                    TTSSEEEEEETHHHHHHHHHHHHHGGGEEE CS
  Abhydrolase_1  71 gddkltlvGhSmGGmialayaaeyperVka 100
                    g+ + +l+G + GG   + +a+  p+r ++
     KIR63494.1 268 GQPRAYLLGLDTGGEGRTVVALGDPDRADR 297
                    788889999999998888887777777665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 3.5e-05
                    EEEEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHHH CS
  Abhydrolase_1  75 ltlvGhSmGGmialayaaeyperVkalvllgaidpaaslieaq 117
                     t++GhS+G++++ ++a ++    +alv++g+  p    ++a+
     KIR63494.1 383 QTVLGHSYGSLVVGTAARDHGLAADALVFVGS--PGVGVDRAD 423
                    589****************************9..655555555 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.9   7.6e-05      0.34      11      80 ..      11      87 ..       3      92 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.6e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHH.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100 11 qaaarfqkqaeeledelqrlkaevdalqsgWsGaaadaf.......qaefeewkqaaqklvdaLeeisealkqaana 80
                +a a+ ++  + +  + ++l++   al++gW Gaaa a        ++e++ + +a+ +  + L+e++  l++a+++
  KIR63494.1 11 AAGAAWRGLTGLVDRRAAELDGAARALRGGWAGAAAGAAggrigalRSELAALAPAVIETDQVLAELAGRLQRAKAR 87
                55555556666666777899****************98711111114555555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.35
# Mc/sec: 4373.15
//
Query:       KIR63495.1  [L=158]
Description: ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-28   99.3   0.0    1.8e-28   99.1   0.0    1.0  1  TsaE      Threonylcarbamoyl adenosine biosynthesis protein Ts
  ------ inclusion threshold ------
      0.045   13.3   2.4      0.056   13.0   2.3    1.5  1  AAA_25    AAA domain
      0.066   13.0   0.2        0.2   11.4   0.1    1.8  2  AAA_29    P-loop containing region of AAA domain
       0.13   12.0   0.2       0.19   11.4   0.2    1.2  1  RuvB_N    Holliday junction DNA helicase RuvB P-loop domain
       0.15   11.2   0.3       0.21   10.8   0.3    1.2  1  TIP49     TIP49 P-loop domain
        0.2   11.2   0.6       0.36   10.4   0.6    1.4  1  cobW      CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   0.0   5.9e-32   1.8e-28       3     120 ..       7     135 ..       5     141 .. 0.88

  Alignments for each domain:
  == domain 1  score: 99.1 bits;  conditional E-value: 5.9e-32
                 SHHHHHHHHHHHHHCH..TEEEEEEESTTSSHHHHHHHHHHHTT--.----TTTTSEEEEEE..SS.....EEEEE-TT-SS....THHHHHCTTCCCC CS
        TsaE   3 seeetealgkklakal..gdvilLeGdLGaGKTtlvrglakalgve.evkSPTFtlveeYelekeg.....lyHfDlYRled....eeeleelgleeyl 89 
                 + ++t+a+g++la +l  gd++lL+G+LGaGKT+l++g+ ++lgv  +++SPTF++++ ++ +  +     l+H+D+YRl d     +e+++l+l+  +
  KIR63495.1   7 TVADTHAFGRRLAGVLhaGDLLLLTGPLGAGKTALTQGIGAGLGVLgDITSPTFVIARVHRPDPVRgrgvaLVHADAYRLGDaadpRAEIDDLDLDASV 105
                 6789**********989999*************************99*************887665899***********6644447789********9 PP

                 STSCEEEEETGGGGCCCS-S-CEEEEEEEET CS
        TsaE  90 eeeavvlvEWpekleellpeedleieleeee 120
                 ++ +v++vEW+e l e+l +++l++++++++
  KIR63495.1 106 DD-SVTVVEWGEGLVEQLVDAHLRVRIDRRD 135
                 55.6*********999999999999998766 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.3   1.9e-05     0.056      27      55 ..      19      47 ..      16     146 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.9e-05
      AAA_25 27 kgllpagelallaGapgtGKttlaldlal 55
                 g+l ag+l ll+G+ g+GKt+l+  +++
  KIR63495.1 19 AGVLHAGDLLLLTGPLGAGKTALTQGIGA 47
                699********************987765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   6.6e-05       0.2      10      38 ..      12      41 ..       7      47 .. 0.76
   2 ?   -1.7   0.0      0.83   2.5e+03       4      11 ..     109     116 ..     107     129 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.6e-05
      AAA_29 10 gtfdghtieidlkg.atlltGpsGsGKSTl 38
                + f ++ + +  +g   lltGp G+GK++l
  KIR63495.1 12 HAFGRRLAGVLHAGdLLLLTGPLGAGKTAL 41
                55666555555667799**********998 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.83
      AAA_29   4 lqlvNWgt 11 
                 + +v+Wg+
  KIR63495.1 109 VTVVEWGE 116
                 67778874 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   6.4e-05      0.19      33      66 ..      25      58 ..      19      67 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.4e-05
      RuvB_N 33 ldhvllyGpPGlGkttlakiiakelgvklkitsg 66
                 d +ll+Gp G Gkt+l++ i + lgv   its 
  KIR63495.1 25 GDLLLLTGPLGAGKTALTQGIGAGLGVLGDITSP 58
                5889*********************998888875 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3     7e-05      0.21      49      75 ..      24      50 ..      19      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 49 aGravLlaGpsgtGktalaiaiskelg 75
                aG  +Ll+Gp g+Gktal  +i   lg
  KIR63495.1 24 AGDLLLLTGPLGAGKTALTQGIGAGLG 50
                78899****************998887 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6   0.00012      0.36       3      17 ..      28      42 ..      26      46 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
                EEEEESTTCCHHHHH CS
        cobW  3 tvltGflGsGKTtLl 17
                ++ltG+lG+GKT+L 
  KIR63495.1 28 LLLTGPLGAGKTALT 42
                689*********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1166.77
//
Query:       KIR63496.1  [L=148]
Description: alanine acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-15   57.9   0.1    1.3e-15   57.6   0.1    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    9.5e-13   48.2   0.0    1.2e-12   47.9   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.1e-11   44.9   0.0    1.5e-11   44.5   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    2.1e-08   34.4   0.0    2.8e-08   34.1   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    2.4e-07   30.6   0.0    3.5e-07   30.1   0.0    1.3  1  FR47             FR47-like protein
    3.6e-06   27.7   0.1    4.4e-06   27.4   0.1    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
      7e-05   22.6   0.5    0.00092   18.9   0.5    2.0  1  PanZ             Acetyltransferase (GNAT) domain, PanZ
     0.0012   18.9   0.0      0.002   18.2   0.0    1.3  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
     0.0024   17.5   0.1      0.003   17.2   0.1    1.2  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.06   13.7   0.3      0.087   13.2   0.3    1.3  1  Toprim_3         Toprim domain
      0.074   13.2   0.0        0.1   12.7   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.1     8e-19   1.3e-15      27     117 .]      33     123 ..       5     123 .. 0.78

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 8e-19
                     HHHSTTCEEEE..EEET.TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  27 sfsleaegllv..aeed.geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     + +l ++++++     d ++++G+++l    +   ++a++  +aV+++++++G+G+aLleal+ +a ++g++   l+v +dn +a+rlY   GF
      KIR63496.1  33 WNELANGHFYLvaTPADgERVLGYAGLAVAAP---DEAWVQNIAVARDAQRRGVGRALLEALLAEAARRGVRSTLLEVAADNAPAQRLYATYGF 123
                     23345664444355555477*********999...99**********************************88788*************66999 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   7.2e-16   1.2e-12      13     111 ..      22     128 ..      12     132 .. 0.79

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 7.2e-16
  Acetyltransf_10  13 f.kefispealrerieegealllvae.eggkivGvi....elrdgshisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yav 98 
                      f  e  sp+ + +++++g+ +l++   +g++++G++    +  d+  ++ ++V+++++++G+g+aLlea+++ea ++g +   l+v a++  a+
       KIR63496.1  22 FgAERWSPAMFWNELANGHFYLVATPaDGERVLGYAglavAAPDEAWVQNIAVARDAQRRGVGRALLEALLAEAARRGVRStLLEVAADNaPAQ 115
                      5556666666777775555555555424566779984433335566***************************99*****9************* PP

  Acetyltransf_10  99 pfYeklGFkavge 111
                      ++Y ++GF+++g 
       KIR63496.1 116 RLYATYGFEPIGV 128
                      *********9976 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   9.3e-15   1.5e-11       3      76 .]      39     125 ..      37     125 .. 0.71

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 9.3e-15
                     EEEEEEEET...TEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH...TT..SEEEEEEEEE....THH.HHHHHHHHTTEEE CS
  Acetyltransf_7   3 gevfVaedd...gkivGfialslld...aeitrlaVdpeyrgkGiGraLlea...ae..kgiileqlel....nae.kaikfYeklGFee 76 
                     g+++++      ++++G+++l++ +   a+  ++aV+ +++++G+GraLlea   ++  +g++ +   l    + + +a+++Y+ +GFe+
      KIR63496.1  39 GHFYLVATPadgERVLGYAGLAVAApdeAWVQNIAVARDAQRRGVGRALLEAllaEAarRGVRST--LLevaaD-NaPAQRLYATYGFEP 125
                     677754333455777899999999887777777******************76652256776522..2233433.259**********95 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.7e-11   2.8e-08      51     148 ..      41     137 ..      31     139 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1.7e-11
  Acetyltransf_4  51 vflvae...sdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFelvgifkk 142
                     ++lva     +r+ Gya l+   +   d+++   + +a rd++ +g+gr+l++al   +++ ++++ l e+a++n++++ +++  GFe  g  ++
      KIR63496.1  41 FYLVATpadGERVLGYAGLAVAAP---DEAWVQNIAVA-RDAQRRGVGRALLEALLAEAARRGVRSTLLEVAADNAPAQRLYATYGFEPIGVRRG 131
                     77777776467899******5555...99999999998.8***************************************************9999 PP

  Acetyltransf_4 143 cikkng 148
                     +++  +
      KIR63496.1 132 YYQPSN 137
                     998655 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   2.1e-10   3.5e-07      22      80 ..      67     126 ..      51     132 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 2.1e-10
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEE.EETT-HHHHHHHHHHT-EEE CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiaergktvllv.vvasNtpsirlyeklGfeki 80 
                   +  + v  +++rrG g+ l +al +e a+rg  ++l+ v+a+N p++rly   Gfe i
  KIR63496.1  67 AWVQNIAVARDAQRRGVGRALLEALLAEAARRGVRSTLLeVAADNAPAQRLYATYGFEPI 126
                 556778999************************98876548899*************976 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   2.7e-09   4.4e-06      31     138 .]      18     124 ..       5     124 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2.7e-09
  Acetyltransf_3  31 pltleeaeewlera.waeeseeegygwaivlkdtg..viGsvglrdleeedeeaelgymlapsfwgkGyateavralleyafeelglerlvavid 122
                     +++l  ae+w   + w+e    +g  +++ ++++g  v+G++gl  + +++  +   + +a++++++G+++  ++all  a ++ g++    +++
      KIR63496.1  18 EADLFGAERWSPAMfWNEL--ANGHFYLVATPADGerVLGYAGLAVAAPDEA-WVQNIAVARDAQRRGVGRALLEALLAEA-ARRGVRSTLLEVA 108
                     5556666667665567664..46655788775554446*******9999876.9999************************.5556********* PP

  Acetyltransf_3 123 keNeaSirvleklGfe 138
                     ++N   +r++   Gfe
      KIR63496.1 109 ADNAPAQRLYATYGFE 124
                     **************97 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.5   5.7e-07   0.00092      47     100 ..      51     107 ..      26     123 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 5.7e-07
        PanZ  47 dRlLgAvkveled.keaelsdlcVRevTRrRGVgsyLleearrqa..Pevkswvlae 100
                 +R Lg + + + + +ea+++++ V +   rRGVg+ Lle  + +a    v+s+ l  
  KIR63496.1  51 ERVLGYAGLAVAApDEAWVQNIAVARDAQRRGVGRALLEALLAEAarRGVRSTLLEV 107
                 69999887777652699*********************9998887434466666554 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.2e-06     0.002      74     127 ..      67     125 ..      64     126 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.2e-06
                     EEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--.....SSHHHHHTTT-EE CS
  Acetyltransf_9  74 agvtgVavapehrgrgvlskLlaraleemreegqplsllfP.....ssipiYrrfGyei 127
                     a+v  +ava + ++rgv ++Ll+++l+e++ +g++ +ll        + ++Y  +G+e+
      KIR63496.1  67 AWVQNIAVARDAQRRGVGRALLEALLAEAARRGVRSTLLEVaadnaPAQRLYATYGFEP 125
                     68999******************************999977445333359999999997 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.9e-06     0.003      85     141 ..      73     127 ..      41     130 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.9e-06
                     EESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEE CS
  Acetyltransf_8  85 ligeaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekek 141
                     +++   a ++g+++all+al++ + ++ ++r+ ++E  ++N+ a rl++  Gfe+ +
      KIR63496.1  73 AVARD-AQRRGVGRALLEALLAEAARR-GVRSTLLEVAADNAPAQRLYATYGFEPIG 127
                     45544.4579*************9887.*************************9876 PP

>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   5.3e-05     0.087      26      81 ..      53     109 ..      41     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.3e-05
    Toprim_3  26 llsaanlkaiawpe.rgkrvviaaDnDaandGreaaeklaerleaagieavllepae 81 
                 +l+ a+l+  a++e +++++ +a+D+     Gr+  e+l ++++++g+  +lle a+
  KIR63496.1  53 VLGYAGLAVAAPDEaWVQNIAVARDAQRRGVGRALLEALLAEAARRGVRSTLLEVAA 109
                 677888987777778**********999877******************99998744 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.3e-05       0.1      19      59 ..      61     101 ..      41     117 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.3e-05
  Acetyltransf_CG  19 vrkegvldfthTeVpeelrGkGiAkkLvkaalddareeglk 59 
                      v   ++  ++ + V    +++G++++L +a l +a ++g +
       KIR63496.1  61 VAAPDEAWVQNIAVARDAQRRGVGRALLEALLAEAARRGVR 101
                      5556677888999**********************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.49
# Mc/sec: 910.74
//
Query:       KIR63497.1  [L=95]
Description: hypothetical protein TK50_19270 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-20   73.0   8.9    1.5e-20   73.0   8.9    1.5  2  DUF1707   Domain of unknown function (DUF1707)
  ------ inclusion threshold ------
      0.075   13.2   0.2       0.12   12.5   0.2    1.4  1  GDH_N     Glutamate dehydrogenase N terminal


Domain annotation for each model (and alignments):
>> DUF1707  Domain of unknown function (DUF1707)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   8.9   1.7e-24   1.5e-20       1      53 []       5      57 ..       5      57 .. 0.99
   2 ?   -2.5   0.0      0.65   5.8e+03      39      49 ..      67      77 ..      62      78 .. 0.69

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 1.7e-24
     DUF1707  1 lRasdadReravelLrealaeGrLtldEfdeRleaalaArtrgeLaalvaDLP 53
                lRasd+dR+rav+ L++++++GrLtldEf eR + a+aArt+g+Laa+++DLP
  KIR63497.1  5 LRASDDDRQRAVADLQRHASAGRLTLDEFSERAADAWAARTLGDLAAVTRDLP 57
                7***************************************************9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.65
     DUF1707 39 ArtrgeLaalv 49
                A  r++L  ++
  KIR63497.1 67 AHGRRDLLVVF 77
                67788887777 PP

>> GDH_N  Glutamate dehydrogenase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   1.4e-05      0.12      55      84 ..      20      47 ..       6      56 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
       GDH_N 55 qalaaafykrmeedefprrtpeqWaalavd 84
                q+ a     r+  def++r+++ Waa +++
  KIR63497.1 20 QRHAS--AGRLTLDEFSERAADAWAARTLG 47
                33333..369999*************8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 690.06
//
Query:       KIR63498.1  [L=366]
Description: sugar ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-55  186.6  15.2    7.3e-55  186.3  15.2    1.1  1  Peripla_BP_4  Periplasmic binding protein domain
     0.0028   18.0   0.0      0.019   15.3   0.0    2.1  2  Peripla_BP_3  Periplasmic binding protein-like domain


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.3  15.2   8.2e-59   7.3e-55       3     258 .]      44     306 ..      41     306 .. 0.94

  Alignments for each domain:
  == domain 1  score: 186.3 bits;  conditional E-value: 8.2e-59
                   EEES-SSTC.HHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEE CS
  Peripla_BP_4   3 vvvkdksnp.ffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerla 98 
                   +++ +ks++ +  a+r+ le+a k++++e+++ ++a++d ++ + + +++i++gv  +++   ds + +++l+kak++G+  + +d++ + +g+  +
    KIR63498.1  44 ILPDSKSSArWEGADRKFLEAAFKAANVEYDI-QNAQGDKTAFQTIADQMITNGVTTLMIVNLDSGTGKAVLDKAKSQGVATIDYDRL-TLGGSAQY 138
                   4455677779*********************9.7******************************************************.******** PP

                   EEEC-HHHHHHHHHHHHHHHCTTH....EEEEEETSCCCHHHHHHHHHHHHHHHHH...-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT..ECEE CS
  Peripla_BP_4  99 yvgfdneaaGelqaeylaeklggk...kgkvvilaGspgdpnaeeriegfrkvlke...ypgikivaevaganwdaekaqqalealltanp..ldgi 187
                   yv+fdnea+G+lq+e la++l +k      +++l+Gsp+d+na+++ +g ++vlk+    ++++ va+  +++wd ++a +  e+  t+ +  +dg+
    KIR63498.1 139 YVSFDNEAVGKLQGEGLAKCLTDKgvkNPAIAYLNGSPTDNNATLFKNGYDSVLKPkfdSKEYTKVADDSVPDWDNTQAATIFEQQYTKASgkIDGV 235
                   *************************99999999***********************9854477777766688****************55336**** PP

                   EESSCCHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT-- CS
  Peripla_BP_4 188 laandgmaegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkGkk 258
                   laandg + +a++ l+++ l+gkv vtgqDat + l+ i +G++++tv++  ++++ aa+ela a++kG+k
    KIR63498.1 236 LAANDGLGNAAISVLKKNKLNGKVPVTGQDATVQGLQNILAGDQCMTVYKAVKKEADAAAELAIAVAKGEK 306
                   ***********************99********************************************97 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.11   9.9e+02      12      64 ..      41      93 ..      36     123 .. 0.64
   2 !   15.3   0.0   2.1e-06     0.019       4     155 ..     159     313 ..     156     318 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.11
                  EEEEE--TTSS-HHHHHHHHHHHHHH.TTSSS-EEEEE-S-SS-SSHHHHH... CS
  Peripla_BP_3 12 iafiggegdrgasasderergfrqal.eelglplnetvvaaddpaaaaaaraal 64
                  i++i +++++ a++  +  r f +a+ ++++++ ++  +++d  a ++ a++++
    KIR63498.1 41 IGVILPDSKSSARWEGA-DRKFLEAAfKAANVEYDIQNAQGDKTAFQTIADQMI 93
                  67777444444444433.334777777999999999888888777666666654 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.1e-06
                   HHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHH.TTSSS-EEEEE-S-SS-SSHHHHH.....HHH...HHCC-SEEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   4 LvelGhrriafiggegdrgasasderergfrqal.eelglplnetvvaaddpaaaaaaraalllqal...klaalPtAviaasDelAlgvlqalrea 96 
                   L ++G ++ a+++ +g+ ++ ++++ + g+ ++l  +   +  + v+++  p++++  +a ++ q++    ++   ++v+aa+D l  +++++l+  
    KIR63498.1 159 LTDKGVKNPAIAYLNGSPTDNNATLFKNGYDSVLkPKFDSKEYTKVADDSVPDWDNTQAATIFEQQYtkaSGK--IDGVLAANDGLGNAAISVLKKN 253
                   778899888888888999999*********9999666666666666666666655555554444777644444..49******************** PP

                   T--TTTTEEEEBSS--SCC.CSSSS..--EEEE--HHHHHHHHHHHHHHHHTT---S--EEE CS
  Peripla_BP_3  97 glrvPedlsvigfddsela.alssP..plTtvrqpleelGraaaellldllegekappeqvl 155
                   +l    ++ v+g d +    +  +   +  tv+ ++++ + aaael +++ +gek+++ q++
    KIR63498.1 254 KLN--GKVPVTGQDATVQGlQNILAgdQCMTVYKAVKKEADAAAELAIAVAKGEKKDTGQTV 313
                   **9..888888888554444333332345799999999999999999999999988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2552.03
//
Query:       KIR63499.1  [L=102]
Description: molecular chaperone GroES [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-36  124.8   0.7    1.2e-36  124.6   0.7    1.0  1  Cpn10     Chaperonin 10 Kd subunit


Domain annotation for each model (and alignments):
>> Cpn10  Chaperonin 10 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.7   6.9e-41   1.2e-36       2      93 .]       9     100 ..       8     100 .. 0.99

  Alignments for each domain:
  == domain 1  score: 124.6 bits;  conditional E-value: 6.9e-41
                 -EE-TTEEEEEESGG-TTS-TT----HHHHHSEEEEEEEEE-T........TS-TTS--T-EEEEEGGGTSS-GG---.EEEEEGGG--EE- CS
       Cpn10   2 ikplgdrVlvkraeeeekteggiilpdsakekpeqGvVvaVGegarnekgedvplevkvgdkVlfpkyagtkvkvdgkeylilkekdIlavi 93 
                 ikpl+dr++v+ +e+e++t++gi++pd+akekp++G+V aVG+g++++kg++vp++vkvgd+Vl++ky+gt+vk+ g+eyl+l+++d+lavi
  KIR63499.1   9 IKPLEDRIVVQANEAETTTASGIVIPDTAKEKPQEGTVLAVGPGRIDDKGNRVPIDVKVGDTVLYSKYGGTEVKYAGEEYLVLSARDVLAVI 100
                 8*****************************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 653.05
//
Query:       KIR63500.1  [L=127]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-22   77.9   3.2    8.5e-22   77.5   3.2    1.2  1  Whib      Transcription factor WhiB


Domain annotation for each model (and alignments):
>> Whib  Transcription factor WhiB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   3.2   4.7e-26   8.5e-22       1      64 []      17      87 ..      17      87 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 4.7e-26
        Whib  1 WreraaCrgedpelffpekg.......dreeeAkavCarCpVrreCleealeegeeyGvwGGltereRraL 64
                W++ +aCrg d++ ff+++g       +re  Ak+vC++CpVr+eC+++al+ +e+yGvwGG++e+eR +L
  KIR63500.1 17 WQRLGACRGRDSAQFFHPDGergssrlRRESGAKTVCRACPVRAECAAHALAVREPYGVWGGFSEAERLRL 87
                ******************999***********************************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 911.84
//
Query:       KIR63501.1  [L=484]
Description: peptidase M1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-27   97.0   0.3    2.4e-27   95.9   0.3    1.5  1  Peptidase_M1    Peptidase family M1 domain
    1.2e-16   61.5   0.0      2e-16   60.7   0.0    1.3  1  Peptidase_M1_N  Peptidase M1 N-terminal domain
  ------ inclusion threshold ------
       0.43   11.0   2.7         19    5.6   2.7    2.5  1  Peptidase_M61   M61 glycyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.3   4.1e-31   2.4e-27      63     218 .]     326     471 ..     316     471 .. 0.90

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 4.1e-31
                   HHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHHHHHHHHHHHHHHHHSCCCHCHHHHHHHCHHHHHHHHTSTTHHHSSGG-GSHHHHHHTSSHHHH CS
  Peptidase_M1  63 dkrsvaeviaHElaHqWfGnlVtmkwWddlwLnEGfatyleylildklepewevseqllleeveealsedaldeshpitqevekpseidevFdsiaY 159
                   ++ +++ v+aHElaHqWfG+ V+++ W+d+wLnEGfaty+e+l+l++  + +          v++++  + ++ s ++  +        ++F   +Y
    KIR63501.1 326 RRGENSGVVAHELAHQWFGDSVSLARWSDIWLNEGFATYAEWLWLEHDGG-RT---------VQQSFDGEYVGASASLWRTPPGRPGAANLFGDSVY 412
                   5667889***************************************9444.33.........355678888999999987666677899******** PP

                   HHHHHHHHHHHHHCTHHHHHHHHHHHHHHCTTEEE-HHHHHHHHHHCCCSCHHTHHHHH CS
  Peptidase_M1 160 eKGasllrmlekllgeevFqkglksYlkefkyknaetedlwdaleealnkdisevmdtw 218
                   ++Ga  ++ l++++g+e F + ++ + ++ + +n++t d++ + e++++ ++++++d w
    KIR63501.1 413 QRGAMTVHALRTTVGDEAFFRIVRGWAADRRDGNVTTADFVAHAEQVSGRQLDALFDAW 471
                   *********************************************************99 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   3.3e-20     2e-16       4     186 .]      69     239 ..      66     239 .. 0.84

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 3.3e-20
                     EEEEEEEEETTTTEEEEEEEEEEEESS-ECEEEEEESSEEEECEEEEECTTCTCEEEEEEEECTTTTCEEEEECCEEETTCEEEEEEEEEEE-.. CS
  Peptidase_M1_N   4 hYdldlkidlkektfkGsvtitlqlkeatseivldakdlkiksvslsaevksesvkidfkieqkdeelltiklkeslqqtskytLeieyegel.. 96 
                      Y ++++ d+++  ++G+ t++ +++++ s  +ld   l++      + v+ ++v ++    ++d++ l+++ +  l   + +t ei yeg    
      KIR63501.1  69 RYVVKVRYDPATDRLTGTTTVQATATASLSAFHLDLAGLTV------RGVTVDGVAAR---HARDGDELVVTPAAGLTSGNGFTAEIRYEGSPkp 154
                     69999************************************......66777777666...5688888999****9**9************7554 PP

                     .BSSS..SEEEEEEEEETSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTSEEEESSECCCEEEETTCEEEEEEEEEESBEGGG CS
  Peptidase_M1_N  97 .ndkl..aGlykstYtdkgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkeetalSnmpeeeseklengqkiteFeqtpkmstYL 186
                      +++   +G ++ t   +++    +v   ++++A+ +fP  D P+ KAt++++i++p+  ta+Sn+     +++  g++++++++  +m +YL
      KIR63501.1 155 lTNEAlgEGGFRHT---SDG----AVALGQPESASTWFPVNDHPADKATYDFEITVPEGLTAVSNGVPVG-KTTRAGWTTWKWAERSPMASYL 239
                     45554114555544...434....577889***********************************96553.444469***************9 PP

>> Peptidase_M61  M61 glycyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   2.7    0.0033        19       4      64 ..     332     381 ..     329     401 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0033
                    HHHHHHHHHTTBTTTB-BGGGSS---SS----STHHHHTHHHHHHHHHHHHHTTSS-HHHH CS
  Peptidase_M61   4 gllaHEyfHsWnvkrirPaelepfdyekenytellwvaEGlTsYygdlllarsgliseeey 64 
                    g++aHE+ H+W +  +  a           + + +w+ EG+ +Y ++l l + g  + ++ 
     KIR63501.1 332 GVVAHELAHQWFGDSVSLA-----------RWSDIWLNEGFATYAEWLWLEHDGGRTVQQS 381
                    6788888888877665433...........3456788888888888888877776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3193.00
//
Query:       KIR63502.1  [L=243]
Description: dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-41  140.4   3.9    1.9e-40  138.4   3.9    1.7  1  adh_short     short chain dehydrogenase
    1.9e-27   96.4   3.9    5.1e-27   94.9   3.9    1.6  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    2.9e-07   30.6   1.5    4.3e-07   30.0   1.5    1.3  1  KR            KR domain
    0.00011   21.8   0.1    0.00013   21.5   0.1    1.1  1  Epimerase     NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.27   11.5   0.0       0.42   10.9   0.0    1.2  1  TSLP          Thymic stromal lymphopoietin


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.4   3.9   5.2e-44   1.9e-40       1     188 [.       5     205 ..       5     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 138.4 bits;  conditional E-value: 5.2e-44
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG..GGCS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf..sels 97 
                 k++lvtGa +GIG++ia  l + G++v v +r  ++ e+++++l+++g +a+ +++Dvtd ++v a+ + ++++ g+ld+LvnNAG+tg++++    ++
  KIR63502.1   5 KIALVTGANKGIGYEIAAGLGALGFSVGVGARDGQRRETAVAKLRAAGVDAFGVPLDVTDDASVTAAAALVEQRAGRLDALVNNAGVTGDRAQlpTTVD 103
                 79*************************************************************************************655555115566 PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB...........-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSH CS
   adh_short  98 eeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvp...........vagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTd 185
                  + +++v+e+N+ gv+ +t a+lp + ++ s rIvn+sS +g  +            ++ +aYs sK ++++ t +  +el+ t+i +na +PG+v+Td
  KIR63502.1 104 LAVVRAVVETNVLGVIRVTNAMLPLLRRSASPRIVNMSSGVGSLArqsaaegelttGPVAVAYSPSKTFLNAVTVQYVRELRGTNILINAACPGYVATD 202
                 667************************************9996541111122222257889************************************** PP

                 HHH CS
   adh_short 186 mak 188
                 +++
  KIR63502.1 203 LNN 205
                 986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   3.9   1.4e-30   5.1e-27       1     180 [.      11     205 ..      11     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 1.4e-30
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga +gIG++iA  l + G +v +  ++ ++ + +v++l +++  ++ +++DVtd+++v+a+++ v+++ g+lD lvnnag++ +  +  ++++ + +
    KIR63502.1  11 GANKGIGYEIAAGLGALGFSVGVGARDGQRrETAVAKLRAAGVDAFgVPLDVTDDASVTAAAALVEQRAGRLDALVNNAGVTGDRAQLPTTVDLAVV 107
                   899************************99988899999887666679*************************************44444667***** PP

                   HHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGT...........SBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGG CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeg..gsivnlssvgae...........rvvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaa 179
                   + ++++n+ +++++++a+lpl++++   +ivn+ss  ++            + p   ay+ +K  l+a+t +  +el   +i +Na +pg+++T+++
    KIR63502.1 108 RAVVETNVLGVIRVTNAMLPLLRRSasPRIVNMSSGVGSlarqsaaegelTTGPVAVAYSPSKTFLNAVTVQYVRELRGTNILINAACPGYVATDLN 204
                   ********************999986677****9865441111111111122344559************************************985 PP

                   G CS
  adh_short_C2 180 s 180
                   +
    KIR63502.1 205 N 205
                   4 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   1.5   1.2e-10   4.3e-07       4     125 ..       8     127 ..       6     183 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.2e-10
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TT..T- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklle..em 100
                 l+tG+  g+G e+a  l + g + + + +R+    ++ ++ +a+l+a g++   v++Dv+d ++v+a+ + ++++++++   ++ Agv+ d++    ++
  KIR63502.1   8 LVTGANKGIGYEIAAGLGALGFS-VGVGARD---GQRRETAVAKLRAAGVDAFGVPLDVTDDASVTAAAALVEQRAGRLDALVNNAGVTGDRAQLptTV 102
                 9****************999975.5666666...44556689***********************************************9987651145 PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT CS
          KR 101 taedleqvlapKvkGawnLhelled 125
                 + + +++v++  v G+  + +++ +
  KIR63502.1 103 DLAVVRAVVETNVLGVIRVTNAMLP 127
                 5567899999999998888777654 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   3.6e-08   0.00013       1     166 [.       7     191 ..       7     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.6e-08
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HH...HHHHHHHHH..T-SEEEE--S---HHHHHHSHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrs...alerlfkee..qpdavihlAavggvaassedpadfi 88 
                 +lVtGa+  iG  ++  l + g  v + +r+ ++++ta  +          v ld+td++   a ++l+++   + da ++ A+v g +a+  +  d++
  KIR63502.1   7 ALVTGANKGIGYEIAAGLGALGFSVGVGARDGQRRETAVAKLRaagvdaFGVPLDVTDDAsvtAAAALVEQRagRLDALVNNAGVTGDRAQLPTTVDLA 105
                 59********************7765555554444444433335699*999999*999994443444555555799*********************** PP

                 HHHTHHHHHHHHHHH..........HHTCTEEEEEEEGGGGTSCSSS.SBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH.T-EEEE CS
   Epimerase  89 eknlqgtlnlleaar..........kagvkrllflsSsevYGkdaeq.pkeettltgplkpnspYaaaKlageklveayaaqy.glnaii 166
                    +++ +n+l ++r          ++   r++++sS    G  a+q   e ++ tgp+    +Y+ +K+    ++ +y ++  g+n++i
  KIR63502.1 106 VVRAVVETNVLGVIRvtnamlpllrRSASPRIVNMSS--GVGSLARQsAAEGELTTGPV--AVAYSPSKTFLNAVTVQYVRELrGTNILI 191
                 ***************888888888655555*******..67778876347778878888..899******99999999998887888766 PP

>> TSLP  Thymic stromal lymphopoietin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.42      73      98 ..     186     211 ..     174     219 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
                 HHHHHHHHHSTT-------------- CS
        TSLP  73 rtkaalaseCpgysetqinntqamkk 98 
                  t++ +++ Cpgy +t+ nn q  + 
  KIR63502.1 186 GTNILINAACPGYVATDLNNFQGVRT 211
                 69999*****************8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1718.94
//
Query:       KIR63503.1  [L=302]
Description: NUDIX hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-36  125.0   0.6    6.6e-19   68.3   0.1    2.1  2  NUDIX     NUDIX domain
      9e-06   25.6   0.1       0.24   11.4   0.1    3.1  2  NUDIX_4   NUDIX domain
  ------ inclusion threshold ------
       0.15   11.6   0.0         16    5.0   0.0    2.1  2  NUDIX_2   Nucleotide hydrolase


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.1   1.1e-22   6.6e-19       2     116 ..       5     120 ..       2     134 .. 0.78
   2 !   55.4   0.0     1e-18     6e-15       3     118 ..     162     287 ..     160     297 .. 0.74

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 1.1e-22
                 EEEEEEEEEEETTSEEEEEEES.SSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSGCSS CS
       NUDIX   2 lrravgvvllnekgevLlvrrs.kkpfpg.WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfleevegelep 98 
                 +r++v  v + ++g+vLlvr s  +++pg W+lPgG++e gE pe+ ++RE++EEtGl ++ + ll+ + +++  +g+    ++ +++ +e+  g+l+ 
  KIR63503.1   5 RRVGVYGVCRGRDGRVLLVRGSaSADHPGvWQLPGGGLEHGEHPEAGVVREFAEETGLAVRVTGLLAAVSDVTGLPGVAL-HTDRIVFAVEATGGTLRD 102
                 455555556666688*****9998888889***************************97788888887777777777666.566665666888889888 PP

                 TSTTTEEEEEEEEHHHHH CS
       NUDIX  99 ndenevsevrwvpleell 116
                 + ++ ++ vrw +l+e++
  KIR63503.1 103 EPDGTTDLVRWSTLDEAA 120
                 877778888*******92 PP

  == domain 2  score: 55.4 bits;  conditional E-value: 1e-18
                 EEEEEEEEEETTSEEEEEEES.SSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHSEEE.EEEEEEEEEEEEEEEEEEEEE.......EEEEEEEEEEE CS
       NUDIX   3 rravgvvllnekgevLlvrrs.kkpfpg.WelPgGkvepgEtpeeAArREleEEtGlea.ellellgrlhylapydgpygd.......eheilyvflee 91 
                 r a+  +++++ g+vLl+  + ++p +g W+lPgG+ + gE p++ ++REl EE+G +  + +ell+++h  +p+ +  ++          + +v++ +
  KIR63503.1 162 RFAAYGLVTDPGGRVLLTLIAdGYPGAGlWHLPGGGTDHGEQPAAGLLRELVEEAG-QLgRVVELLTVHHRYDPG-ALGPEgrpmdwhG--VRVVYRVA 256
                 6789999*********999887888888****************************.455999999966655554.3444446866433..33555533 PP

                 ECSGCSST....STTTEEEEEEEEHHHHHHH CS
       NUDIX  92 vegelepn....denevsevrwvpleellke 118
                 v++  e +    + + ++++ w+p+++l + 
  KIR63503.1 257 VDDPTEARvtelAGGSTAAAAWFPPDALGDL 287
                 3333333334679999***********9333 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   8.4e-05       0.5       2      53 ..      10      68 ..       9     132 .. 0.60
   2 !   11.4   0.1   4.1e-05      0.24       2      64 ..     166     233 ..     165     296 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.4e-05
                EEEEEEC.TEEEEEE--TTSSSTT-EE-SEEE.-TTS-HHHHHH...HHHHS-EEE..E CS
     NUDIX_4  2 vllirdd.grvllekRpekgllggLwefPgge.eegeeleeala...reelgieve..e 53
                + + r + grvll +  ++    g w++Pgg  e ge +e+ ++   +ee+g++v+   
  KIR63503.1 10 YGVCRGRdGRVLLVRGSASADHPGVWQLPGGGlEHGEHPEAGVVrefAEETGLAVRvtG 68
                56677778*********************877677777775444344567776544332 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 4.1e-05
                 EEEEEEC.TEEEEEE--TTSSSTT-EE-SEEE.-TTS-HHHHHH...HHHHS-EEE..EEEEEEEEEEET CS
     NUDIX_4   2 vllirdd.grvllekRpekgllggLwefPgge.eegeeleeala...reelgieve..elepgtvkHvft 64 
                 + l+ d+ grvll+   +    +gLw +Pgg    ge++++ l     ee+g        e +tv+H + 
  KIR63503.1 166 YGLVTDPgGRVLLTLIADGYPGAGLWHLPGGGtDHGEQPAAGLLrelVEEAGQ--LgrVVELLTVHHRYD 233
                 6778888899999999998899*******877455666554332222234442..122344588889886 PP

>> NUDIX_2  Nucleotide hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0037        22      60      93 ..      20      58 ..       8      73 .. 0.79
   2 ?    5.0   0.0    0.0027        16      69      97 ..     190     218 ..     176     232 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0037
     NUDIX_2 60 vLlLq.ielq....efkLpggklksgedeiegLkrkLak 93
                vLl + ++++     ++Lpgg l++ge+++ g+ r +a+
  KIR63503.1 20 VLLVRgSASAdhpgVWQLPGGGLEHGEHPEAGVVREFAE 58
                5566633322334469*****************999876 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0027
     NUDIX_2  69 efkLpggklksgedeiegLkrkLakklsk 97 
                  ++Lpgg  ++ge++  gL r L +   +
  KIR63503.1 190 LWHLPGGGTDHGEQPAAGLLRELVEEAGQ 218
                 589*******************9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2092.82
//
Query:       KIR63504.1  [L=120]
Description: chorismate mutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-11   42.0   0.4    1.1e-10   41.7   0.4    1.1  1  CM_2       Chorismate mutase type II
  ------ inclusion threshold ------
       0.55   10.9   3.7       0.81   10.3   0.5    2.1  2  GTP-bdg_M  GTP-binding GTPase Middle Region


Domain annotation for each model (and alignments):
>> CM_2  Chorismate mutase type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.4   1.3e-14   1.1e-10       1      52 [.      49     102 ..      49     114 .. 0.91

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1.3e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSGSS-HHHHHHHHHHHHH..H CS
        CM_2   1 RkeIdeiDdeileLLaeRaelakevgeyKkeeglpvydpeReaevlerlee..g 52 
                 R++IdeiD+++++L +eRa+l++evg+ + ++g + +  +Re+e+ler+++  g
  KIR63504.1  49 RERIDEIDRTLIALWQERAALSQEVGATRMASGGTRLVLSREREILERFRQvlG 102
                 99***********************************************99543 PP

>> GTP-bdg_M  GTP-binding GTPase Middle Region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.5   9.1e-05      0.81      34      71 ..      18      58 ..       4      66 .. 0.79
   2 ?    1.9   0.2     0.038   3.4e+02      26      60 ..      65      99 ..      58     102 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.1e-05
                ..X.....XXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHH CS
   GTP-bdg_M 34 gGgig...trGpGetkleldrrlireriaklkkeLekvkkk 71
                gGg g    + +G t++ +d     eri  +++++++++++
  KIR63504.1 18 GGGRGeaaPSAAGSTRTGTDDSVAAERIVAIRERIDEIDRT 58
                344335556679*************************9986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.038
                XXXXXXXX..X..XXXXXXXXXHHHHHHHHHHHHH CS
   GTP-bdg_M 26 lgkelsrqgGgigtrGpGetkleldrrlireriak 60
                 +++ls+  G  ++   G   + +++r+i er  +
  KIR63504.1 65 ERAALSQEVGATRMASGGTRLVLSREREILERFRQ 99
                45677888776555555555555666888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 846.15
//
Query:       KIR63505.1  [L=146]
Description: hypothetical protein TK50_19760 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.25   11.3   0.8       0.42   10.5   0.8    1.3  1  PIG-P     PIG-P
       0.39   11.4   1.1        2.2    8.9   0.1    2.0  2  Pex14_N   Peroxisomal membrane anchor protein (Pex14p) conser


Domain annotation for each model (and alignments):
>> PIG-P  PIG-P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.8   4.7e-05      0.42      10      53 ..      45      92 ..      38     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.7e-05
       PIG-P 10 yllstlafllyllwallPeevlhalgityypn....ryWalavpayll 53
                 +lst+ +   l+ a +P  vl ++ ++++ +    r Wa+++pa   
  KIR63505.1 45 LILSTVRVSGTLVGASVPVVVLANVALSWFAHaavgRRWAVVLPATPW 92
                6899999999********************999999*******99644 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00025       2.2     114     150 ..       4      40 ..       1      44 [. 0.85
   2 ?    1.4   0.1      0.05   4.5e+02     130     155 ..     114     139 ..      95     140 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00025
     Pex14_N 114 ltkppkppppPlrtwrdllitatalaglgaglyglsk 150
                 l ++++ p pP r+wr l  ++ +++g+ a++ ++++
  KIR63505.1   4 LPPQAPVPSPPGRSWRLLDLALRVAGGVVAVVGAVAT 40 
                 556788899********************99977765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.05
     Pex14_N 130 dllitatalaglgaglyglskryiaP 155
                 +++ +a+++ag+++ ++  +++++aP
  KIR63505.1 114 NWVGLAMIVAGAMTFAVMGFRQVLAP 139
                 68889999999999999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 973.89
//
Query:       KIR63506.1  [L=371]
Description: N-succinyldiaminopimelate aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-42  145.7   0.0    2.7e-42  145.3   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
      0.071   11.6   0.0       0.11   11.0   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   0.0     3e-46   2.7e-42       3     353 ..      33     358 ..      31     368 .. 0.85

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 3e-46
                    EEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEE CS
  Aminotran_1_2   3 vinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilv 98 
                    +inL+ + + +     ++p++++a ++     +++  y+ + g p+l+ a+a ++ rs    ++    v+ + G+++l + l++ll l pgd+++v
     KIR63506.1  33 LINLSMGTPVDP----VPPVIRQALAD----ASDAPGYPLTAGTPALRDAVATWVARSCDARVDGL-GVLPTIGSKELVAWLPTLLGLGPGDVVVV 119
                    699*****9998....99999999866....899999*******************9999999999.***************************** PP

                    EESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCB CS
  Aminotran_1_2  99 pdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfv 194
                    p+  y+ y++++r++g++ vr                ++al  +p    ++++++v+sp NPtG v++ ++l+k++d a+++++++ +De Y  + 
     KIR63506.1 120 PSICYPTYEDGARIAGATTVRTD-------------SLTALGPDP----RVRLVWVNSPGNPTGRVLPANHLRKVVDWARERGAVVASDECYLPLG 198
                    ******************99998.............334456555....999******************************************** PP

                    SSSS.HTHHH.HGGSTTSTT..EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHH..HHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 195 fgsl.davat.ranveeepn..llivgslsKafGlaGeRvGyilgnaavvsqlrklsr..pflsssllqaavaaalsdallkqseleemrqrlqkr 284
                    + +  ++v++  ++v+ +    ll v slsK  +laG R G+++g++a+v  l k+    ++++++++qaa  aal d++    + ++ r+r+ +r
     KIR63506.1 199 WSAAaEPVSVlAPEVSGGSYdgLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLKVRKhaGMIVPAPVQAAMIAALGDQE----HADAQRERYRAR 290
                    *965555555878888777788******************************999975115788**************99....99********** PP

                    HHHHHHHHHHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS..TTEEEEECTTS-H CS
  Aminotran_1_2 285 rkelrdeLaelglkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftv..pgrlRitvAglte 353
                    r++l ++++ +g++v  s++g++l+ +++ e+  +  + L+ + g++v +g  ++    +++R  + + ++
     KIR63506.1 291 RERLLAAFTGAGFTVEHSEAGLYLW-LTRGEDCWATVDWLARR-GILVAAGVFYGPggAQHVRAAL-TESD 358
                    *************************.56666344444446666.7777765444445445555555.4455 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.2e-05      0.11     135     176 ..     150     194 ..     133     198 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.2e-05
                      CTTEEEEEEESS-TTTT---...-HHHHHHHHHHTT-EEEEEGTT CS
  Cys_Met_Meta_PP 135 kentklvylEtptnpllkvv...DiekiaklakkagvlvvvDntf 176
                      +++++lv++ +p+np+ +v+    ++k+++ a+++g++v  D ++
       KIR63506.1 150 DPRVRLVWVNSPGNPTGRVLpanHLRKVVDWARERGAVVASDECY 194
                      5799************998633368999**********9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3006.04
//
Query:       KIR63507.1  [L=1112]
Description: peptidase S8 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.4e-58  196.0   7.4    2.7e-57  194.3   7.4    1.8  1  Peptidase_S8  Subtilase family
  ------ inclusion threshold ------
      0.066   13.5   0.0          1    9.6   0.0    2.5  2  Cohesin       Cohesin domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.3   7.4     3e-61   2.7e-57       1     298 []     220     483 ..     220     483 .. 0.89

  Alignments for each domain:
  == domain 1  score: 194.3 bits;  conditional E-value: 3e-61
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B...SSSSSB-SSTTSEEEEEE- CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaan.apeegekngvapgakilsvkv 96 
                   g+gv+vavlDtGvd +hpdl                     + a+s + s+  +    g+ i HGthvA+++a++ a++ g+  gvap+a++ s kv
    KIR63507.1 220 GRGVTVAVLDTGVDAEHPDLA-------------------GRLAESRNFSEVPEP---GDTIGHGTHVASTIAGSgAASGGKYRGVAPDATLVSGKV 294
                   89*****************99...................334444444444433...44567************99999***************** PP

                   SSTTSB-HH..HHHHHHHHHHHH.CT-SEEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  97 ldtsggsmetgteliraieeaae.dkvdvinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvga 192
                   + ++g s+   +++++++++aa  +++ v+nmsl  ++++p+++   e  a+++++ + g+l+v +aGN g       + ++vg+p++++ +++vga
    KIR63507.1 295 CEDNGCSD---SAILAGMQWAAVdKRATVVNMSLS-GWDTPEVDPLEE--AVQTLTAQTGTLFVLAAGNYG-------TDASVGSPASADAALAVGA 378
                   *****999...9***********99999*******.*********999..******999************.......7788*************** PP

                   ESTTSSB-TT--B-TT........-EEEE-S-CCCCCCCCCH.HHTTTHH.EEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS-EE.. CS
                   xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 193 yttegkiapfSsrGpssd.gklkpdivapGgnivstwsrqsn.nsaglss.yqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAqdlgk 286
                   ++ ++++a+fSsrGp +   +lkpdi+apG++iv+     ++  ++ + + y + sGTSmA+P++ag++All +++p++++  ++a+l+ +A++   
    KIR63507.1 379 VDRDDELADFSSRGPRTGdDALKPDITAPGVDIVAARAAGTTlGEPVG-DqYVAASGTSMATPHVAGSVALLAQRHPDWKAGALKATLMAAAKP--- 471
                   ***************99779************7766666664033334.26*****************************************55... PP

                   ....SSSSSSTT CS
                   xxxxxxxxxxxx RF
  Peptidase_S8 287 adniesfaqGaG 298
                    ++ + ++qGaG
    KIR63507.1 472 HPEQTAYQQGAG 483
                   578899999998 PP

>> Cohesin  Cohesin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.07   6.3e+02      83     106 ..     907     929 ..     896     942 .. 0.87
   2 ?    9.6   0.0   0.00012         1       7      41 ..    1021    1059 ..    1019    1061 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.07
                 STTCBEESSEEEEEEEEEESTTS- CS
     Cohesin  83 gssgiaekdgvlatitfkvkskaa 106
                 g++gi+  +g+l+++ + v s+aa
  KIR63507.1 907 GTEGIT-RQGDLIVVDLAVHSDAA 929
                 8999**.**************996 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00012
                  EEEE-TTSEEEEEEEEESECTT....EEEEEEEEEE.TT CS
     Cohesin    7 kvsakvGdtvtvpvtvsnvskk....vaaaqftikYDpa 41  
                  ++sa++G t+tvpv+v+   ++    va++ ++ +YD  
  KIR63507.1 1021 DNSAPAGRTFTVPVRVEPQEGAptakVASLTVDASYDGG 1059
                  6789************9877777779***********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.40
# Mc/sec: 8265.64
//
Query:       KIR63508.1  [L=359]
Description: alkanesulfonate monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-82  275.5  25.3    7.6e-82  275.2  25.3    1.0  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.2  25.3   4.2e-86   7.6e-82       1     314 []       1     329 [.       1     329 [. 0.96

  Alignments for each domain:
  == domain 1  score: 275.2 bits;  conditional E-value: 4.2e-86
  Bac_luciferase   1 mefgvflptrqggalgaas............aslrylvelaraaEelGfdavwvaehhggpggaldaftllaalaaaTerirlgtavtplytrhP 83 
                     m+ ++flpt ++g++ +a+            a++ yl+e+araaE++Gf a++++ + g+    +d++ ++aa+a++T+ri++++av++++   P
      KIR63508.1   1 MTYHWFLPTSGDGHQVGAAtvtagaarheraATVGYLAEVARAAEAAGFAALLTPVGSGC----PDPWIVCAAVAQHTDRIGMLVAVRTGF-ALP 90 
                     7889999999999999999999999999999*****************************....***************************.*** PP

  Bac_luciferase  84 avlAqqaatLdhlsgGRfglglgtggpaveerrfGv..dhderyarlrEfvevlrrlwrgeevdfeGeffsv.kgalllprpgqgpiPvyvaaas 175
                     +++A qa  ++ +sgGR+ l+++tgg+++e+r++G+  dhd+ryar+ Ef++vlrr wrg + df G ++++  g+l+ p ++  p+Pvy+++as
      KIR63508.1  91 TLVAAQAEAFQAVSGGRLALNVVTGGDPAEQRAYGDflDHDDRYARTGEFIDVLRRTWRGTPFDFTGAHYRIaGGGLTAPLTE--PPPVYLGGAS 183
                     **********************************************************88888*********66666666663..369******* PP

  Bac_luciferase 176 paglelaarhadglllageppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraearaliagld..........fyaldsegagr 260
                     pa+ ++aarhad++l++gepp+++a++++r+ra aae+gr   ++r+g++l+vi+++t+ eA+aea++l+ag+           f ++ds+g+ r
      KIR63508.1 184 PAAEAVAARHADAYLMWGEPPAAIAARVARVRALAAERGR---TLRTGLRLHVIARPTAGEAWAEADRLLAGMSperiaaaqarFRRMDSVGQAR 275
                     ****************************************...***************************9999********************* PP

  Bac_luciferase 261 eaeaa...eiqeeedanlwagaadavpdelvaatalvGtpeqvaerlaayaeagvde 314
                     +a+++   ++ ++ ++nlwag + ++    +a+talvG++++va+r+++ya+ gvde
      KIR63508.1 276 MAALHggsADALTVAPNLWAGIGLVR---EGAGTALVGSYAEVAARIDEYASHGVDE 329
                     *****99899***************9...**************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2384.21
//
Query:       KIR63509.1  [L=307]
Description: NUDIX hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-12   45.2   0.0    1.5e-11   44.4   0.0    1.4  1  NUDIX          NUDIX domain
    1.8e-10   41.4   0.3    3.5e-10   40.4   0.3    1.5  1  NUDIX-like     NADH pyrophosphatase-like rudimentary NUDIX do
     0.0015   18.1   0.0     0.0041   16.7   0.0    1.8  1  zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   2.6e-15   1.5e-11      30     116 ..     191     271 ..     158     281 .. 0.77

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 2.6e-15
                 EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSGCSST.STTTEEEEEEEEHHHH.H CS
       NUDIX  30 WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfleevegelepn.denevsevrwvpleel.l 116
                 ++  +G vepgE++e+A++RE+ EE+G+ + ++++ g         ++++ + ++++ f++ ++  ++++ d+ e++ +rw++  e+ +
  KIR63509.1 191 FSCFAGYVEPGESAEDAVVREVHEEVGVAVGNITYAG--------SQSWPFPGSLMLGFVALADPAQPVRvDPTEIAYARWFSRREIgA 271
                 46779**********************9889999999........456777788888888777777777778*************9943 PP

>> NUDIX-like  NADH pyrophosphatase-like rudimentary NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.3   5.9e-14   3.5e-10      11     102 .]      27     120 ..      19     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 5.9e-14
  NUDIX-like  11 rllveseeseeelllpadssaal.........vgkdseelvfLGldeggapvfAvdvsareeeikeaeeeggafvelRavmlalsaedaalaaqArall 100
                 r+lv ++  ++++l++ad s+++         ++ ++  + fLG++ +gapvfAvd s+++e       +g + v+lR+v+  l ++da++++ A al 
  KIR63509.1  27 RVLVLDSAADGRALVRADASPPElvllgsgelPEVPRSVPMFLGVEPDGAPVFAVD-SPLPE------LPGTRAVGLREVGHLLLDRDAGIFTAALALT 118
                 5555555777888888888888888888888899**********************.66777......6****************************** PP

  NUDIX-like 101 dW 102
                 +W
  KIR63509.1 119 NW 120
                 ** PP

>> zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.8e-07    0.0041       1      22 [.     122     143 ..     122     144 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.8e-07
  zf-NADH-PPase   1 rthrFCgrCGaptepaeggwar 22 
                    ++h + +  G+pt++ e+gw+r
     KIR63509.1 122 ARHGYSSVTGQPTRVDEAGWSR 143
                    69*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2256.74
//
Query:       KIR63510.1  [L=221]
Description: response regulator receiver protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-24   86.0   0.0    2.9e-24   85.4   0.0    1.3  1  Response_reg   Response regulator receiver domain
    2.9e-21   74.8   0.1    5.6e-21   73.9   0.1    1.5  1  GerE           Bacterial regulatory proteins, luxR family
    6.8e-09   35.3   0.0    1.1e-08   34.6   0.0    1.3  1  Sigma70_r4_2   Sigma-70, region 4
    8.5e-08   31.8   0.0    2.1e-07   30.6   0.0    1.6  1  HTH_23         Homeodomain-like domain
    8.4e-07   28.4   0.3    1.5e-06   27.6   0.3    1.4  1  Sigma70_r4     Sigma-70, region 4
    1.5e-06   28.2   0.0    4.2e-06   26.8   0.0    1.7  1  HTH_28         Helix-turn-helix domain
    2.5e-06   27.1   0.6    6.2e-06   25.9   0.1    1.8  2  HTH_38         Helix-turn-helix domain
    1.1e-05   25.4   0.0    3.6e-05   23.7   0.0    1.9  1  HTH_29         Winged helix-turn helix
    0.00011   22.2   0.0    0.00022   21.2   0.0    1.6  1  HTH_7          Helix-turn-helix domain of resolvase
    0.00024   20.6   0.0    0.00039   19.9   0.0    1.4  1  HTH_24         Winged helix-turn-helix DNA-binding
    0.00024   20.4   0.0    0.00048   19.5   0.0    1.4  1  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
    0.00033   20.5   0.1     0.0015   18.4   0.1    2.0  2  HTH_11         HTH domain
    0.00037   20.9   0.1    0.00061   20.2   0.1    1.4  1  HTH_40         Helix-turn-helix domain
    0.00042   20.1   0.3     0.0074   16.1   0.3    2.3  1  HTH_10         HTH DNA binding domain
    0.00074   19.5   0.0     0.0028   17.7   0.0    2.0  1  HTH_20         Helix-turn-helix domain
     0.0033   17.4   0.1     0.0064   16.5   0.1    1.4  1  HTH_3          Helix-turn-helix
     0.0037   17.0   0.4      0.006   16.3   0.4    1.4  1  TadZ_N         Pilus assembly protein TadZ N-terminal
     0.0052   17.4   0.1      0.014   16.0   0.1    1.7  1  HTH_32         Homeodomain-like domain
     0.0072   16.1   0.0      0.015   15.1   0.0    1.5  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
  ------ inclusion threshold ------
       0.01   15.7   0.0      0.019   14.9   0.0    1.4  1  HTH_36         Helix-turn-helix domain
      0.015   15.3   0.0      0.025   14.6   0.0    1.3  1  HTH_Mga        M protein trans-acting positive regulator (MGA
      0.017   15.4   0.1      0.036   14.3   0.1    1.5  1  KORA           TrfB plasmid transcriptional repressor
      0.019   14.6   0.0      0.035   13.7   0.0    1.4  1  HTH_50         Helix-turn-helix domain
      0.022   14.6   0.0      0.043   13.7   0.0    1.4  1  Terminase_5    Putative ATPase subunit of terminase (gpP-like
      0.037   14.5   0.1      0.067   13.6   0.1    1.4  1  HTH_26         Cro/C1-type HTH DNA-binding domain
      0.038   13.8   0.0      0.099   12.5   0.0    1.7  1  DUF746         Domain of Unknown Function (DUF746)
      0.043   14.0   0.0       0.14   12.3   0.0    1.8  2  HTH_17         Helix-turn-helix domain
      0.043   13.7   0.6       0.27   11.2   0.1    2.4  2  MarR_2         MarR family
      0.049   13.8   0.0      0.071   13.2   0.0    1.1  1  DMAP1_like     Putative DMAP1-like
      0.088   13.1   0.2       0.19   12.0   0.2    1.5  1  MLD            Membrane Localization Domain
      0.098   12.5   0.0       0.14   12.0   0.0    1.2  1  Sigma70_ECF    ECF sigma factor
       0.15   12.6   0.0       0.32   11.6   0.0    1.5  1  DUF134         Protein of unknown function  DUF134
       0.22   11.6   0.0        0.5   10.4   0.0    1.5  1  DUF2089        Protein of unknown function (DUF2089)


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.0   5.3e-27   2.9e-24       2     111 ..       1     110 [.       1     111 [. 0.98

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 5.3e-27
                   EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEEE CS
  Response_reg   2 livdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddfl 98 
                   ++vdD+p+ re++++ l+e+g  +va+  +g++a++ + + ++dl++lD+++p+++G+e+++ +r+  pe++v++l+a +e++ + +a+kaga ++l
    KIR63510.1   1 MVVDDHPMWREGVARDLTEAGHLVVATSGEGRQAVRVAPAARPDLVVLDLQLPDISGVEVIRGLRAALPEVRVLMLSASGEQQSVLDAVKAGATGYL 97 
                   69*******************99************************************************************************** PP

                   ESSG-HHHHHHHH CS
  Response_reg  99 sKpfdpeeLlkal 111
                   +K  +p+e l+a+
    KIR63510.1  98 VKSAAPAEFLDAV 110
                   ********99987 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.1     1e-23   5.6e-21       2      57 .]     159     214 ..     158     214 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 1e-23
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                  L++RE evLrl+a+G+s k+IAe+l++S +TV++h++n + KL++++rvel+r+a
  KIR63510.1 159 RLTDRETEVLRLVAKGMSYKQIAERLGLSHRTVQNHVQNTLGKLQLHNRVELTRYA 214
                 69****************************************************98 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0     2e-11   1.1e-08      10      54 .]     159     202 ..     158     202 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 2e-11
                   TS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  10 eLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   +L+ r+ e++ l   +g+syk+IAe+lg+s +tV+++++  + kL
    KIR63510.1 159 RLTDRETEVLRL-VAKGMSYKQIAERLGLSHRTVQNHVQNTLGKL 202
                   68899999999*.78***********************9888776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   3.8e-10   2.1e-07       9      38 ..     166     195 ..     161     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 3.8e-10
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTvyrwl 38 
                 ++l+l+a+G+s+++IA++Lg s+rTv++ +
  KIR63510.1 166 EVLRLVAKGMSYKQIAERLGLSHRTVQNHV 195
                 69************************9865 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.3   2.8e-09   1.5e-06       4      49 ..     159     203 ..     158     204 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 2.8e-09
                 HS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Sigma70_r4   4 sLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLR 49 
                 +L++re evl+l+  +g+++++I+erlg+S  +V  +  ++l kL+
  KIR63510.1 159 RLTDRETEVLRLVA-KGMSYKQIAERLGLSHRTVQNHVQNTLGKLQ 203
                 69**********96.777*************************996 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   7.7e-09   4.2e-06       4      34 ..     166     196 ..     165     197 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 7.7e-09
      HTH_28   4 eiikllaaGhsvreaArelgisrrtvyrWik 34 
                 e+++l+a+G+s++++A++lg+s+rtv+  ++
  KIR63510.1 166 EVLRLVAKGMSYKQIAERLGLSHRTVQNHVQ 196
                 799***********************98775 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   1.1e-08   6.2e-06      12      42 ..     166     196 ..     159     197 .. 0.88
   2 ?   -1.7   0.1       4.7   2.6e+03       5      20 ..     202     218 ..     201     220 .. 0.54

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.1e-08
      HTH_38  12 eIerllaeGlslreIArrLgrspsTIsRElk 42 
                 e  rl a+G+s+++IA rLg s+ T++++++
  KIR63510.1 166 EVLRLVAKGMSYKQIAERLGLSHRTVQNHVQ 196
                 567999*********************9986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.7
      HTH_38   5 LsleeReeIerl.laeG 20 
                 L l++R+e+ r  +++G
  KIR63510.1 202 LQLHNRVELTRYaIERG 218
                 66666766655533444 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   6.5e-08   3.6e-05       3      33 ..     166     195 ..     165     203 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 6.5e-08
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvyrwl 33 
                 ++l+l+a+G+s  +qiA++lgls rtv++++
  KIR63510.1 166 EVLRLVAKGMS-YKQIAERLGLSHRTVQNHV 195
                 58********8.****************987 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.1e-07   0.00022       4      38 ..     159     191 ..     152     192 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4.1e-07
                 -SS-HHHHGGGGSSTTTT--STTTSSSS---SSSS CS
       HTH_7   4 sklskndinrvvkLleeGisiskIAkevnisRsTv 38 
                 ++ +++   +v++L+++G+s ++IA+++++s  Tv
  KIR63510.1 159 RLTDRE--TEVLRLVAKGMSYKQIAERLGLSHRTV 191
                 555565..89*********************9998 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   7.1e-07   0.00039       9      39 ..     168     196 ..     160     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 7.1e-07
      HTH_24   9 LelLqknprisqreLAerlglSpstvnrrlk 39 
                 L+l+ k  ++s++++AerlglS  tv  +++
  KIR63510.1 168 LRLVAK--GMSYKQIAERLGLSHRTVQNHVQ 196
                 555555..9********************98 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   8.8e-07   0.00048      18      46 ..     165     193 ..     162     196 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 8.8e-07
  HTH_Tnp_ISL3  18 ayilelllesrsvkavArqlgvSwtTVwr 46 
                     +l+l+ +++s k++A++lg+S +TV++
    KIR63510.1 165 TEVLRLVAKGMSYKQIAERLGLSHRTVQN 193
                   57999**********************96 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.9   1.6e+03      38      53 ..      16      31 ..      15      32 .. 0.89
   2 !   18.4   0.1   2.8e-06    0.0015       6      37 ..     168     196 ..     163     213 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.9
      HTH_11 38 aLeelgvpIesepgrG 53
                +L+e+g  +++++g G
  KIR63510.1 16 DLTEAGHLVVATSGEG 31
                799*********9976 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 2.8e-06
      HTH_11   6 lelLleargpisgeeLAeeLnvSrrtvrrdIk 37 
                 l+l+  a+g +s +++Ae+L++S rtv+++++
  KIR63510.1 168 LRLV--AKG-MSYKQIAERLGLSHRTVQNHVQ 196
                 4444..444.899*****************97 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   1.1e-06   0.00061       5      37 ..     167     199 ..     163     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.1e-06
      HTH_40   5 tlelleeglsieeIAkerglkesTIegHLaeli 37 
                  l+l+ +g+s ++IA++ gl+  T+++H+ + +
  KIR63510.1 167 VLRLVAKGMSYKQIAERLGLSHRTVQNHVQNTL 199
                 68999***********************97655 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   1.4e-05    0.0074      21      51 ..     172     202 ..     160     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.4e-05
      HTH_10  21 PRrvtlkeLAkelGIskstlsehLrkaeskl 51 
                  + ++ k++A++lG+s  t+++h+++   kl
  KIR63510.1 172 AKGMSYKQIAERLGLSHRTVQNHVQNTLGKL 202
                 578899*******************998887 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.1e-06    0.0028      15      46 ..     167     196 ..     165     204 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.1e-06
                 HHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHH CS
      HTH_20  15 ilraLaraegltaselaerldlskntlsyHLr 46 
                 +lr+   a+g++ +++aerl+ls  t+ +H++
  KIR63510.1 167 VLRLV--AKGMSYKQIAERLGLSHRTVQNHVQ 196
                 67777..***********************83 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.2e-05    0.0064       5      27 ..     169     192 ..     167     193 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.2e-05
                 HH.HTTHHHHHHHHHHTSSHHHHH CS
       HTH_3   5 Rk.qlglsqeeLAeklGvsrstis 27 
                 R+ ++g+s +++Ae+lG+s +t++
  KIR63510.1 169 RLvAKGMSYKQIAERLGLSHRTVQ 192
                 6669******************97 PP

>> TadZ_N  Pilus assembly protein TadZ N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.4   1.1e-05     0.006      12     121 ..       7     115 ..       1     123 [. 0.76

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHTTTTEEEEE--ST-HHHHHHHHHHHT-SEEEEEE-TTTHHHHHHHHHHHHHH-TT-EEEEEE-TT-HHHHHHHHHHT-SEEEETT-BHH CS
      TadZ_N  12 pgeldwlqnslasagqvvpagsasleellalldvtaagvlfislgksnlvsqgalveglvsarpmlsvvaigdgldnqlvlaamragardfitygaras 110
                 p   + +   l+ ag++v a s    + + +   +   ++++ l   + +s   ++ gl +a p + v+ +    ++q vl a++aga  ++   a  +
  KIR63510.1   7 PMWREGVARDLTEAGHLVVATSGEGRQAVRVAPAARPDLVVLDLQLPD-ISGVEVIRGLRAALPEVRVLMLSASGEQQSVLDAVKAGATGYLVKSAAPA 104
                 555555666677777777777666655555555544455555554443.6777899******************************************* PP

                 HHHHHHHHHHT CS
      TadZ_N 111 eltglirrlgg 121
                 e+   +rr   
  KIR63510.1 105 EFLDAVRRTAA 115
                 *9999999765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   2.6e-05     0.014      11      71 ..     139     193 ..     129     195 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.6e-05
      HTH_32  11 eeGlegLkdrprrgrpr...klsdevrariiallreeprWsprqlaarlaeregvkvShstvyr 71 
                 ++G+++ +  +  grp    +l+d++ + ++ ++ +   +s++q+a+rl       +Sh+tv++
  KIR63510.1 139 AGGPAASRGTAAVGRPAdapRLTDRETEVLRLVA-K--GMSYKQIAERL------GLSHRTVQN 193
                 456666666655589965569****999888888.5..69*********......8*****985 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.8e-05     0.015      18      36 ..     175     193 ..     174     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.8e-05
  HTH_AsnC-type  18 isyaeLAervGlSestvlr 36 
                    +sy+++Aer+GlS  tv++
     KIR63510.1 175 MSYKQIAERLGLSHRTVQN 193
                    79***************97 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   3.4e-05     0.019      27      47 ..     176     196 ..     124     197 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.4e-05
      HTH_36  27 sqetlakrlglsknTvsraik 47 
                 s++ +a+rlgls +Tv+++++
  KIR63510.1 176 SYKQIAERLGLSHRTVQNHVQ 196
                 5****************9976 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   4.5e-05     0.025      19      43 ..     173     197 ..     164     198 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.5e-05
     HTH_Mga  19 ksltldelakeLglseltlqsdise 43 
                 k ++++ +a++Lgls +t+q+ +++
  KIR63510.1 173 KGMSYKQIAERLGLSHRTVQNHVQN 197
                 679*****************98776 PP

>> KORA  TrfB plasmid transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   6.6e-05     0.036      15      60 ..     159     203 ..     156     212 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.6e-05
        KORA  15 elaeqtveiargvLVegkkqadvatelgltkqavsqavkrvwaaha 60 
                 +l+++ +e+ r v  +g + +++a++lgl+ + v++ v++ +   +
  KIR63510.1 159 RLTDRETEVLRLV-AKGMSYKQIAERLGLSHRTVQNHVQNTLGKLQ 203
                 5778888887765.79***********************9987654 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.4e-05     0.035      19      44 ..     170     195 ..     162     197 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.4e-05
      HTH_50  19 ayekYpStRklAkrLGvShtaiankl 44 
                 +++k  S   +A+rLG+Sh ++ n +
  KIR63510.1 170 LVAKGMSYKQIAERLGLSHRTVQNHV 195
                 5666679999************9976 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.9e-05     0.043      12      35 ..     173     196 ..     169     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.9e-05
  Terminase_5  12 qGyrvaeIAeelglkeatVysWkk 35 
                  +G + ++IAe lgl+++tV++ ++
   KIR63510.1 173 KGMSYKQIAERLGLSHRTVQNHVQ 196
                  67889***************9886 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   0.00012     0.067       7      40 ..     171     204 ..     168     208 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00012
      HTH_26   7 adrgitkseLargtgisaatlsrlvkgkpervsl 40 
                  ++g+++++ a+++g+s  t++++v+++   + l
  KIR63510.1 171 VAKGMSYKQIAERLGLSHRTVQNHVQNTLGKLQL 204
                 579************************9877665 PP

>> DUF746  Domain of Unknown Function (DUF746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00018     0.099       4      34 ..     166     196 ..     163     199 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00018
      DUF746   4 elIrlLsqplslaeaadllgtdegiiakwvr 34 
                 e+ rl    +s +++a++lg++++++++ v+
  KIR63510.1 166 EVLRLVAKGMSYKQIAERLGLSHRTVQNHVQ 196
                 7788889999******************986 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       8.8   4.8e+03      18      38 ..      14      37 ..      13      40 .. 0.70
   2 ?   12.3   0.0   0.00026      0.14       2      23 ..     175     196 ..     175     207 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 8.8
      HTH_17 18 vyrlirrgelpaa..kiGrr.wri 38
                +++l  +g l +a  + Gr+ +r+
  KIR63510.1 14 ARDLTEAGHLVVAtsGEGRQaVRV 37
                578899999944476688775665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00026
      HTH_17   2 ltveEaAelLgvsrstvyrlir 23 
                 ++ +++Ae Lg+s +tv++ ++
  KIR63510.1 175 MSYKQIAERLGLSHRTVQNHVQ 196
                 6789***************986 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       2.4   1.3e+03      42      60 ..      14      32 ..      12      34 .. 0.77
   2 ?   11.2   0.1   0.00049      0.27      10      43 ..     167     196 ..     159     199 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.4
                HHHHHHTTSEEEEESSSSS CS
      MarR_2 42 lkrLvaaGLverrpgpeDk 60
                 ++L +aG+++  ++ e +
  KIR63510.1 14 ARDLTEAGHLVVATSGEGR 32
                689999**99988876654 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00049
                 HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHH CS
      MarR_2  10 vLaaLgrrpgrdltvgelarrlglsksavsrilk 43 
                 vL  ++ +    ++ +++a+rlgls+ +v+++++
  KIR63510.1 167 VLRLVAKG----MSYKQIAERLGLSHRTVQNHVQ 196
                 55555444....7899**************9997 PP

>> DMAP1_like  Putative DMAP1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00013     0.071      35      87 ..     159     209 ..     154     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00013
  DMAP1_like  35 eledkelkikeiinkkqsypnvfLaSslgfskstwnkkvekiLkkfgldkklk 87 
                  l d+e+++ +++ k +sy ++  a  lg+s  t++ +v+++L k++l+++  
  KIR63510.1 159 RLTDRETEVLRLVAKGMSYKQI--AERLGLSHRTVQNHVQNTLGKLQLHNRVE 209
                 678****************985..************************99875 PP

>> MLD  Membrane Localization Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   0.00035      0.19      16      56 ..     173     209 ..     170     213 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00035
         MLD  16 iGesyqsildkLdeyhellgnmkllkleqvealfeLrkqie 56 
                  G sy++i++ L   h + +n     ++ + +l  L++++e
  KIR63510.1 173 KGMSYKQIAERLGLSHRTVQN---HVQNTLGKLQ-LHNRVE 209
                 588******************...5566666666.999998 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00026      0.14     137     173 ..     164     196 ..     155     208 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00026
  Sigma70_ECF 137 dpeqarlvelrkleGlsveEiAeklgvskrtverrla 173
                  + e +rlv     +G+s + iAe+lg+s+rtv+ + +
   KIR63510.1 164 ETEVLRLV----AKGMSYKQIAERLGLSHRTVQNHVQ 196
                  44444444....48******************98765 PP

>> DUF134  Protein of unknown function  DUF134
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00058      0.32      36      78 ..     161     202 ..     148     209 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00058
      DUF134  36 sldeleairlvdyedlkqeeaaklmGiskatlwrlltearkki 78 
                 +  e e +rlv  + +++++ a+ +G+s++t+ + ++++ +k+
  KIR63510.1 161 TDRETEVLRLVA-KGMSYKQIAERLGLSHRTVQNHVQNTLGKL 202
                 55799*****96.79******************9999888776 PP

>> DUF2089  Protein of unknown function (DUF2089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00091       0.5      48      83 ..     173     208 ..     153     218 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00091
     DUF2089  48 arGnlkevekelgisYpTvrnrldeileaLgyeeee 83 
                 +  + k+++++lg+s  Tv+n++++ l +L+++++ 
  KIR63510.1 173 KGMSYKQIAERLGLSHRTVQNHVQNTLGKLQLHNRV 208
                 344689***********************9998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1668.70
//
Query:       KIR63511.1  [L=312]
Description: GTPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-40  136.9   0.0    7.9e-40  136.5   0.0    1.2  1  RsgA_GTPase   RsgA GTPase
    1.8e-06   28.0   0.0    4.6e-06   26.7   0.0    1.7  2  MMR_HSR1      50S ribosome-binding GTPase
    4.7e-05   23.8   0.5    0.00014   22.3   0.1    1.9  3  AAA_16        AAA ATPase domain
     0.0012   19.4   0.0     0.0025   18.3   0.0    1.5  1  ABC_tran      ABC transporter
     0.0034   17.0   0.0       0.06   12.9   0.0    2.2  2  AAA_25        AAA domain
     0.0078   16.4   0.7      0.015   15.5   0.1    1.8  2  AAA_33        AAA domain
  ------ inclusion threshold ------
       0.01   16.0   0.0      0.045   14.0   0.0    1.9  2  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.012   15.3   0.0      0.023   14.4   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
       0.02   15.2   0.1      0.037   14.3   0.1    1.4  1  AAA_22        AAA domain
       0.03   14.2   0.0      0.049   13.6   0.0    1.3  1  NACHT         NACHT domain
      0.031   14.2   0.6       0.24   11.3   0.0    2.1  2  MobB          Molybdopterin guanine dinucleotide synthesis pr
      0.039   13.7   0.7       0.12   12.0   0.0    2.0  2  AAA_30        AAA domain
       0.04   13.4   0.2        1.4    8.4   0.1    2.8  3  GTP_EFTU      Elongation factor Tu GTP binding domain
      0.045   13.3   0.0       0.17   11.5   0.1    1.9  2  Ras           Ras family
      0.078   12.6   0.0       0.14   11.8   0.0    1.3  1  ATP-synt_ab   ATP synthase alpha/beta family, nucleotide-bind
       0.13   11.9   0.0       0.26   10.9   0.0    1.5  1  cobW          CobW/HypB/UreG, nucleotide-binding domain
       0.18   12.2   0.0       0.29   11.5   0.0    1.3  1  RNA_helicase  RNA helicase
       0.18   11.8   0.3        3.8    7.5   0.0    2.1  2  Dynamin_N     Dynamin family
        0.2   10.9   0.0        0.3   10.3   0.0    1.2  1  Septin        Septin


Domain annotation for each model (and alignments):
>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   0.0   8.4e-43   7.9e-40       2     166 ..      51     230 ..      50     231 .. 0.94

  Alignments for each domain:
  == domain 1  score: 136.5 bits;  conditional E-value: 8.4e-43
                  ---S-EETTTT...............EES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--T CS
  RsgA_GTPase   2 leRknelvrpk...............vaNvdqllivvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsa 84 
                   eR+++l+r++               vaN dql+iv++l++p  ++ ++dr+Lv+a +++iep+++l+K+Dl+  e+    +   +++l+++ +l++ 
   KIR63511.1  51 AERTSVLRRTAdddettaegrlervvVANADQLVIVSALADPPPRTGFIDRCLVAAYDADIEPLLCLTKADLAGPEQ----VLGYYAELELPYVLLRP 144
                  68999999998999999999999999************************************************999....99999********9987 PP

                  TTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETT.......TEEEESS-SSSS--G CS
  RsgA_GTPase  85 ktkegleelkellkdktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelae.......gglliDtPGfreldl 166
                  +  ++l++l++ll++++svlvG+SGvGKStL+n+l+p+++ ++g vs+  grG+hT+t++  l+l+         g+++DtPG+r+++l
   KIR63511.1 145 D--ADLDALRDLLAGRVSVLVGHSGVGKSTLVNRLVPDADRAVGVVSA-IGRGRHTSTSAVALRLPPrpgivadPGWIVDTPGVRSFGL 230
                  7..99***************************************9998.8**********999998767677768***********997 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.1   4.8e+03      73      73 ..      50      50 ..      15      88 .. 0.51
   2 !   26.7   0.0   4.8e-09   4.6e-06       3      58 ..     161     226 ..     159     277 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.1
                H CS
    MMR_HSR1 73 l 73
                +
  KIR63511.1 50 I 50
                1 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 4.8e-09
                 EEEESTTSSHHHHHHHHHTS...TEEESSSTTSSSSEEEEEEE.........ETTEEEEEEECGGCSS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge...kaivsdkpgtTrdinegrvk.........lkgkeielvDtpGlie 58 
                 ++vG++ vGKStL+n+l+ +   ++ v +  g  r++ +  v+         +  ++  +vDtpG + 
  KIR63511.1 161 VLVGHSGVGKSTLVNRLVPDadrAVGVVSAIGRGRHTSTSAVAlrlpprpgiV-ADPGWIVDTPG-VR 226
                 69****************75553568888889999999999985554444422.35689******.43 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.7   5.4e+03      72      91 ..      47      66 ..      19      94 .. 0.64
   2 !   22.3   0.1   1.4e-07   0.00014      14      60 ..     149     194 ..     145     214 .. 0.72
   3 ?   -2.9   0.0       8.1   7.6e+03      52      82 ..     268     288 ..     256     303 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.7
      AAA_16 72 laqalareellrqlldeaes 91
                ++++++r ++lr  +d++e+
  KIR63511.1 47 IVRIAERTSVLRRTADDDET 66
                45555555555555555443 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 1.4e-07
      AAA_16  14 salervrsgrpelvllsGesGvGKsslvrellralekdggif.lrgkc 60 
                 +al+++ +g  ++ +l+G+sGvGKs+lv++l   + ++ g++ + g+ 
  KIR63511.1 149 DALRDLLAG--RVSVLVGHSGVGKSTLVNRLVPDADRAVGVVsAIGRG 194
                 567777778..56779************99998899885555444444 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 8.1
      AAA_16  52 ggiflrgkcdqlesaipysalaqalareell 82 
                 ++++++gk+d+           ++++ ++ll
  KIR63511.1 268 DAWVAAGKADER----------RLASYRRLL 288
                 466677777766..........222222333 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.7e-06    0.0025       9      41 ..     155     187 ..     151     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.7e-06
                 ETTSEEEEEESTTSSHHHHHHHHTTSS--SEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   9 kegekvaivGenGaGKStLlkllagllkpteGe 41 
                  +g++ ++vG++G GKStL++ l    + + G 
  KIR63511.1 155 LAGRVSVLVGHSGVGKSTLVNRLVPDADRAVGV 187
                 579999**************9998777666665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.19   1.8e+02      70     108 ..      52      88 ..      37     119 .. 0.74
   2 !   12.9   0.0   6.4e-05      0.06      27      50 ..     152     174 ..     143     180 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.19
      AAA_25  70 eqgkVlyvsaEdsedelrrRlravgealrddarllvldl 108
                 e+  Vl   a+d+e + + Rl++v  a+   ++l ++++
  KIR63511.1  52 ERTSVLRRTADDDETTAEGRLERVVVAN--ADQLVIVSA 88 
                 6677888889999999999999999887..466666664 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.4e-05
      AAA_25  27 kgllpagelallaGapgtGKttla 50 
                 ++ll ag +++l+G++g+GK+tl+
  KIR63511.1 152 RDLL-AGRVSVLVGHSGVGKSTLV 174
                 5665.8****************98 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         9   8.5e+03      86     100 ..      45      59 ..      41      81 .. 0.64
   2 !   15.5   0.1   1.6e-05     0.015       2      22 ..     160     180 ..     159     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 9
      AAA_33  86 arflklarrlgvpvr 100
                 ar++++a+r +v +r
  KIR63511.1  45 ARIVRIAERTSVLRR 59 
                 566667766665543 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.6e-05
      AAA_33   2 vllvGlpGsGKstlaerllkk 22 
                  +lvG++G+GKstl+ rl+  
  KIR63511.1 160 SVLVGHSGVGKSTLVNRLVPD 180
                 589**************9854 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.7e-05     0.045       3      22 ..     161     180 ..     160     192 .. 0.90
   2 ?   -1.3   0.0       2.6   2.4e+03      48      73 ..     257     282 ..     246     286 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.7e-05
                 EEESSTTSSHHHHHHCHCT- CS
         Roc   3 vlvGdsgvGKtsllkrfved 22 
                 vlvG sgvGK++l++r+v d
  KIR63511.1 161 VLVGHSGVGKSTLVNRLVPD 180
                 79**************9865 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.6
                 TTBTTTTCEEEEEEEE-SGGCTTTT- CS
         Roc  48 endkkvkkvklniWDtaGqerfrslh 73 
                 +++ +  ++ l+ W  aG+ + r l+
  KIR63511.1 257 QHTAEEADCALDAWVAAGKADERRLA 282
                 3444556799999*999998777665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.5e-05     0.023      23      39 ..     157     174 ..     149     183 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.5e-05
      AAA_29  23 g.atlltGpsGsGKSTll 39 
                 g + +l+G+sG+GKSTl+
  KIR63511.1 157 GrVSVLVGHSGVGKSTLV 174
                 55789************8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   3.9e-05     0.037       6      28 ..     158     180 ..     155     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.9e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleq 28 
                 ++ v++G+sG+GK+tl++rl+  
  KIR63511.1 158 RVSVLVGHSGVGKSTLVNRLVPD 180
                 5679***************9865 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.2e-05     0.049       1      23 [.     158     180 ..     158     185 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.2e-05
                 SCEEEEC-TTTCHHHHHHHHHHH CS
       NACHT   1 rlvilqGeaGsGKTtLlqklala 23 
                 r+++l G +G+GK+tL+ +l+ +
  KIR63511.1 158 RVSVLVGHSGVGKSTLVNRLVPD 180
                 789****************9866 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.48   4.5e+02      54      92 ..      40      81 ..      37      87 .. 0.76
   2 ?   11.3   0.0   0.00025      0.24       4      33 ..     162     191 ..     159     201 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.48
        MobB 54 kAGAkevlvaskerlalikel.eeaelsleellarl..sevD 92
                +AGA + +v   er+ +++++ +++e++ e  l+r+  +++D
  KIR63511.1 40 AAGALARIVRIAERTSVLRRTaDDDETTAEGRLERVvvANAD 81
                69********99999999999877788888777776434455 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00025
        MobB   4 ivgksgsGKTtLleklipelkarglrvgti 33 
                 +vg+sg GK tL+++l+p   +    v++i
  KIR63511.1 162 LVGHSGVGKSTLVNRLVPDADRAVGVVSAI 191
                 89****************987776666666 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1         1   9.5e+02     117     125 ..      29      37 ..      10      86 .. 0.51
   2 ?   12.0   0.0   0.00013      0.12       8      42 ..     149     181 ..     146     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1
      AAA_30 117 akvilvGDe 125
                  +v lvGD+
  KIR63511.1  29 DRVGLVGDT 37 
                 333333332 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00013
      AAA_30   8 aavealltsgdrvavltGpAGtGKttalkalreaw 42 
                 +a++ ll+++  v+vl+G  G GK+t+++ l+  +
  KIR63511.1 149 DALRDLLAGR--VSVLVGHSGVGKSTLVNRLVPDA 181
                 5777888777..9**************99886544 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.27   2.6e+02      99     137 ..      84     125 ..      75     138 .. 0.72
   2 ?    8.4   0.1    0.0015       1.4       7      27 ..     161     181 ..     157     199 .. 0.88
   3 ?   -0.4   0.0      0.74     7e+02      74      84 ..     219     229 ..     218     259 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.27
                 EEEETTTBSTHHH...HHHHHHHHHTTTEEEEEEESCGSTHH CS
    GTP_EFTU  99 lvvdaveGvepqt...eevlrlalkegvpiivfiNKmDrlka 137
                 ++v+a  ++ p+t    + l  a + ++++ ++++K+D ++ 
  KIR63511.1  84 VIVSALADPPPRTgfiDRCLVAAYDADIEPLLCLTKADLAGP 125
                 556666665555522245677889999***********9844 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0015
                 EEEESTTSSHHHHHHHHHHHT CS
    GTP_EFTU   7 giighvDhGKtTLtdrLlykt 27 
                 +++gh   GK+TL+ rL+ ++
  KIR63511.1 161 VLVGHSGVGKSTLVNRLVPDA 181
                 679**************9766 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.74
                 EEEESSSGGGH CS
    GTP_EFTU  74 liDtPGHvdFs 84 
                 ++DtPG ++F 
  KIR63511.1 219 IVDTPGVRSFG 229
                 89****99996 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00018      0.17       3      22 ..     161     180 ..     159     200 .. 0.90
   2 ?   -1.9   0.0       2.3   2.2e+03      37      64 ..     254     281 ..     240     286 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00018
                 EEEESTTSSHHHHHHHHHHS CS
         Ras   3 vlvGdsavGKtslllrfvkd 22 
                 vlvG s+vGK++l++r v d
  KIR63511.1 161 VLVGHSGVGKSTLVNRLVPD 180
                 89*************99865 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.3
                 EEEEEEETTEEEEEEEEEETTSGGGHHH CS
         Ras  37 ytkeievdgkevkleiwDTAGqeefksl 64 
                  + + ++++ ++ l+ w  AG+ + ++l
  KIR63511.1 254 ANCQHTAEEADCALDAWVAAGKADERRL 281
                 3455677889999999999998776666 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00015      0.14       5      54 ..     148     196 ..     146     212 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00015
                  HHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEEESEEHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   5 lDalfpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvgiGergn 54 
                  lDal  +  G   +++g +gvGk+++++ l+  ++ + + ++ +iG  ++
   KIR63511.1 148 LDALRDLLAGRVSVLVGHSGVGKSTLVNRLVPDADRA-VGVVSAIGRGRH 196
                  89999****************************9777.999999997544 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00027      0.26       2      31 ..     159     187 ..     158     191 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00027
                 EEEEEESTTCCHHHHHHHHHCT--SS-EEE CS
        cobW   2 vtvltGflGsGKTtLlnhllenraglklav 31 
                 v+vl+G  G GK+tL+n+l+ + a++ + v
  KIR63511.1 159 VSVLVGHSGVGKSTLVNRLVPD-ADRAVGV 187
                 789****************954.4555555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00031      0.29       2      23 ..     161     182 ..     160     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00031
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   +l+G+sg+GKStl+++L+ +  
    KIR63511.1 161 VLVGHSGVGKSTLVNRLVPDAD 182
                   689*************987765 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0041       3.8       2      19 ..     161     178 ..     161     188 .. 0.91
   2 ?    2.1   0.0      0.19   1.8e+02     105     113 ..     219     227 ..     210     254 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0041
                 EEEEBTTTTHHHHHHHHH CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLl 19 
                 ++vG+   GKS+++n L+
  KIR63511.1 161 VLVGHSGVGKSTLVNRLV 178
                 689*************98 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.19
                 EEE---B-S CS
   Dynamin_N 105 lvDlPGlds 113
                 +vD+PG+ s
  KIR63511.1 219 IVDTPGVRS 227
                 9*****998 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00032       0.3       8      27 ..     161     180 ..     159     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00032
                 EEEEBTTSSCCCCCCTTSSS CS
      Septin   8 mvvGesglGkttlintlfet 27 
                 ++vG+sg+Gk+tl+n l+ +
  KIR63511.1 161 VLVGHSGVGKSTLVNRLVPD 180
                 579************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2428.34
//
Query:       KIR63512.1  [L=433]
Description: 3-phosphoshikimate 1-carboxyvinyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.6e-100  335.2   0.0   5.2e-100  335.1   0.0    1.0  1  EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvin


Domain annotation for each model (and alignments):
>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.1   0.0  2.9e-104  5.2e-100       3     414 ..      18     422 ..      16     425 .. 0.95

  Alignments for each domain:
  == domain 1  score: 335.1 bits;  conditional E-value: 2.9e-104
                    CSS--EEEEE--B-HHHHHHHHHHHGGGBSSEEEES---SHHHHHHHHHHHHTT.EEEEEECTSEEEEEGTT..--EE-HHHHTT-GGGGGGHHHH CS
  EPSP_synthase   3 kgkrlegevkvpGsksisnralllAaLaegestitnlLdseDvrsmlealreLgaeiikldeekevviveglggsfeapeelvldlgnsgtalrlL 98 
                    +++++ +++++pGsks+++ral+l+aLa g sti ++L+++D++ m+  lr+Lga+++    +++++ v++   +  a+  + +d+g +gt +r++
     KIR63512.1  18 ASDPVVATLRLPGSKSMTARALVLSALAGGPSTIAGPLRARDTELMAGGLRALGAHMSIT--DDDRWLVRP---HPLAG-PAHVDVGLAGTIMRFV 107
                    678999************************************************766555..689999999...33444.378************* PP

                    HHHHSEESSEEEEE-SBTTCGS--HHHHHHHHHTT-EEEEETTEEEEEESEET...SS-BEEEEETSSTTHHHHHHHHHHHTTSBS.EEEEES..- CS
  EPSP_synthase  99 tallalasgevvLtGdesirkRPidrlldaLrqlGaeieveegenkaplkvkg...lklkgveikaevsSqqvtsllllaallaeg.ttelee..l 188
                    +++++la+g+++++Gd+++r+RP+ +l+daLr+lG+++e+    +++pl+v g     +++v i+a+ sSq v+ lll+a+ +  g  +++++  +
     KIR63512.1 108 PPVAGLAEGRITFDGDPQARTRPLGPLIDALRSLGVRVESPAT-GSLPLTVFGtgsVAGGEVVIDASASSQLVSGLLLAAPRFDRGvVVRHVGppV 202
                    ***************************************7766.*******999999*****************************999*****99 PP

                    TTHHHHHHHHHHHHHTT-EEEETTSSEEEEEE--SSB--EEEE--B-HHHHHHHHHHHHHTT-EEEEES--GGGGHHH..HHHHHHHHTTEEEEEE CS
  EPSP_synthase 189 asepsiddtlkmlkkfgikietsgteesitvkGkeklpgteyvvegDassAayflvaAaitggevtvenvginslqGdiealdeilekmgaeitqe 284
                    +s+p+  +t++ml+++g+ +++ gt++ + v++++   +  +++e+D+s A+ f +aA++tggevt+++++++s q  +e l+  l++mg e+  +
     KIR63512.1 203 PSAPHLRMTVQMLRAAGAAVDD-GTPDVWVVEPGPLTGR-GWEIEPDLSGAVPFFAAALVTGGEVTLRGWPRSSAQ-PVEQLRTLLHRMGGEVVLT 295
                    **********************.9999******987666.8***********************************.6689999**********99 PP

                    STSEEEEEETTS--BEEEEEBGSTTSBHGGGHHHHHHHHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEETTEEEEEEEEE.EB-EEEE-TTS CS
  EPSP_synthase 285 edasivvgpsglklkdvdietlpdeaptlavlaafaegttviegiaelrvketdrlaamateLrklGaeveeeedgliiipaekqlkgaevesydD 380
                     d  +v+g+  +++++ d++++ +++p+l +la +a++ ++ +g+a++r +etdr+aa+a e+  lGa+++e  dgl+i+p    l+g++ ++y+D
     KIR63512.1 296 TDGLTVRGTGVVHGIEADLSDVSELTPALTALAVLADSPSRFTGVAHIRGHETDRIAALAREFTGLGADLTESADGLEIRPR-P-LHGGQFRTYHD 389
                    9888888888********************************************************************8875.5.9********** PP

                    TTTTHHHHHHHHHSBSEEEEETTHHHHHHSSSHH CS
  EPSP_synthase 381 hRiamalalaglvaegeveiddiectdksfpefe 414
                    hR+a a a+ gl++ g +e dd++ct+k++pef 
     KIR63512.1 390 HRMAHAAAVTGLAVPG-IELDDVSCTSKTMPEFP 422
                    ***********99999.****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       200  (0.0111551); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 3729.45
//
Query:       KIR63513.1  [L=248]
Description: cobalamin biosynthesis protein CbiX [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-28   98.4   0.1    1.9e-17   63.5   0.0    2.2  2  CbiX      CbiX
     0.0039   16.7   2.8     0.0039   16.7   2.8    1.7  2  PALP      Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.032   13.6   0.0    1.6  2  CbiK      Cobalt chelatase (CbiK)


Domain annotation for each model (and alignments):
>> CbiX  CbiX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.0   3.2e-21   1.9e-17       1     103 [.      15     116 ..      15     118 .. 0.98
   2 !   32.9   0.0     1e-11   6.2e-08       2     105 ..     144     238 ..     143     240 .. 0.89

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 3.2e-21
                 -STSSCCHHHHHHHHHHHHHHHCCSCCCEECESCCCECCSCCSSHHHHC-SBSEEEEEEESSSSSHHHHTHHHHHCT--SSSS-TTEEEEE---CCCSC CS
        CbiX   1 HGSrdpesneeveklaeelrekgpfkpvelgfleleepsleealrelaeqgvkrivvvPlflfaGvhvkeDIpeeleeaeeahpkdveieytepLGthp 99 
                 HGSrdp++ e+ ++la+++ + +p + v  ++l+ + p   e+lr+la+ g  r v+vPl+l a++h + D+p ++++a+e  p  ++++++++LG+ +
  KIR63513.1  15 HGSRDPRAAEATRALARAVAAVRPGVAVSASWLDHTDPGPTEVLRSLAAAGHPRAVLVPLLLTAAYHRRVDVPAAVAAARESGP-PIDVRVSDVLGPAD 112
                 ************************************************************************************.************99 PP

                 CHHH CS
        CbiX 100 lvae 103
                  v++
  KIR63513.1 113 GVVD 116
                 9986 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 1e-11
                 STSSCCHHHHHHHHHHHHHHHCCSCCCEECESCCCECCSCCSSHHHHC-SBSEEEEEEESSSSSHHHHTHHHHHCT--SSSS-TTEEEEE---CCCSCC CS
        CbiX   2 GSrdpesneeveklaeelrekgpfkpvelgfleleepsleealrelaeqgvkrivvvPlflfaGvhvkeDIpeeleeaeeahpkdveieytepLGthpl 100
                 G+rdp+++  v  +a++l ++ + +p +++++ ++ p+   a+++l++ g++r++v  +fl++G + +      l+ a++a      ++++ pL + p+
  KIR63513.1 144 GTRDPRARGSVGRVAAALGAELG-VPCRVSYASAAPPDAGAAVSRLRAAGARRVAVSAYFLAPGLFHDA----VLAGARAAGA----VTVSGPLTDAPE 233
                 9**********************.****************************************99888....5555555555....788888888888 PP

                 HHHHH CS
        CbiX 101 vaevl 105
                 +a+++
  KIR63513.1 234 LADLV 238
                 88876 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.36   2.1e+03     250     256 ..      24      30 ..       5      72 .. 0.59
   2 !   16.7   2.8   6.5e-07    0.0039      63     122 ..     150     219 ..     114     228 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.36
                 HHHHHHH CS
        PALP 250 eamrlla 256
                 ea r la
  KIR63513.1  24 EATRALA 30 
                 2222222 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 6.5e-07
                 S.SHHHHHHHHHHHHHT-EEEEEEETTS-H...HHHHHHHHTT-EEEEE......CCHHHHHHHHHHHHH CS
        PALP  63 s.GNhgralAaaaallGlkvtivvpadasp...ekvallrllGaevvev......ggdydeavaaaaela 122
                 + G  gr +Aa +a lG+++++   + a+p   + v +lr+ Ga+ v v      +g + +av a a++a
  KIR63513.1 150 ArGSVGRVAAALGAELGVPCRVSYASAAPPdagAAVSRLRAAGARRVAVsayflaPGLFHDAVLAGARAA 219
                 1599*************************88889**********99999888998888999999966554 PP

>> CbiK  Cobalt chelatase (CbiK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.3e-06     0.032     139     217 ..       5      86 ..       1      93 [. 0.81
   2 ?   -1.7   0.0      0.23   1.4e+03      62      90 ..     183     211 ..     180     216 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.3e-06
                 -TTEEEEEEE---SCH.HHHHHHHHHHHHHH.CT-S.EEEEETT.SSS-HHHHHHHHHHHT--EEEEEE-SSS--HHHHCCC CS
        CbiK 139 rkdealvfvgHGtehe.snavyaeldkvlke.kdfkqvvvgtve.gyPeveevieelkkkgikevkliPlmlvAGdHaknDm 217
                    + +v+v+HG++ + ++++ + l + + + +++  v  + ++ ++P+  ev+++l  +g  +  l+Pl+l+A  H + D+
  KIR63513.1   5 AAGDPVVLVAHGSRDPrAAEATRALARAVAAvRPGVAVSASWLDhTDPGPTEVLRSLAAAGHPRAVLVPLLLTAAYHRRVDV 86 
                 567889******98652667777888777774777777777775379******************************99987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.23
                 HHHHHHHHCT--EEEEEE--SCSSHHHHH CS
        CbiK  62 ealeklkeegykevivqplhiipGeeyek 90 
                  a+++l++ g + v+v + ++ pG  ++ 
  KIR63513.1 183 AAVSRLRAAGARRVAVSAYFLAPGLFHDA 211
                 58999*************99999976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1787.18
//
Query:       KIR63514.1  [L=85]
Description: WhiB family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-26   90.8   2.1    7.3e-26   90.5   2.1    1.1  1  Whib      Transcription factor WhiB


Domain annotation for each model (and alignments):
>> Whib  Transcription factor WhiB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   2.1   4.1e-30   7.3e-26       1      63 [.       3      70 ..       3      71 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 4.1e-30
        Whib  1 WreraaCrgedpelffpekg.....dreeeAkavCarCpVrreCleealeegeeyGvwGGltereRra 63
                Wr++a Cr+edpelffp+++      + e+AkavC+rC V+++Cl++ale+g++ GvwGG++e+eRra
  KIR63514.1  3 WRHHAVCRDEDPELFFPIGTsgpalLQVEQAKAVCRRCSVTDQCLQWALESGQDAGVWGGMSEEERRA 70
                ******************999****9****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 714.18
//
Query:       KIR63515.1  [L=119]
Description: phage repressor protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-11   41.9   0.0    1.1e-10   41.3   0.0    1.3  1  Peptidase_S24  Peptidase S24-like


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0     6e-15   1.1e-10       2      60 ..      20      80 ..      19      88 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 6e-15
                   XXSSTTCCTXXTTXEEEEECTS.---TTSEEEEEETTCE.-EEEEEEEEETTEEEEE.SST CS
  Peptidase_S24  2 vpGdSMeptlldGdlilVdkfs.epkrGdivvfrlpgee.eayiKrviglpgdrvllasnn 60
                   v+G SM+ptl++Gd +lV+++   +++Gd+vv+     +  + +Kr ++  ++ + ++ +n
     KIR63515.1 20 VTGPSMAPTLRHGDAVLVRRGGrPIRPGDVVVAVFRTRPeLLVVKRAVRPADGGWWVRGDN 80
                   89*****************98879999**998865555556**********9999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 973.33
//
Query:       KIR63516.1  [L=317]
Description: molecular chaperone GroES [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-19   69.5   0.1    1.1e-18   68.6   0.1    1.5  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    3.9e-17   62.5   4.6    6.6e-17   61.7   2.0    2.5  2  ADH_zinc_N    Zinc-binding dehydrogenase
    9.5e-06   25.5   0.0    0.00082   19.2   0.0    2.6  1  ADH_N         Alcohol dehydrogenase GroES-like domain
     0.0025   17.1   1.6     0.0037   16.6   1.6    1.2  1  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.1   2.5e-22   1.1e-18      18     133 .]     205     313 ..     188     313 .. 0.84

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 2.5e-22
                   H-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH----EEEEEEGGG CS
  ADH_zinc_N_2  18 tggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGklrpvvdrvfplee 114
                   + +e vDvv++tvg +++ ++slk  ++ +r+v+ g+  ++   +k+++ r+  + ++e l  ++++ + + l+el+++++e+++rpvvd+v p+++
    KIR63516.1 205 L-PERVDVVIETVGEATF-DHSLKSAAPMARIVVSGA--TAGHEPKVNL-RRVFAMQLEILG-TSMGTPGE-LTELLTFCAEHEVRPVVDSVVPFSR 294
                   4.678*********9999.*****99887***99886..3444455545.778888888888.57774666.************************* PP

                   HHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2 115 aaeAhrylesgrarGKiVl 133
                   + eA+++l+sg a+GKiV+
    KIR63516.1 295 IEEAFARLHSGEAFGKIVI 313
                   ******************7 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         2     9e+03       1      22 [.      53      74 ..      53      75 .. 0.80
   2 !   61.7   2.0   1.5e-20   6.6e-17       1     129 [.     162     278 ..     162     279 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2
                HHHHHHHHHHHHTT-EEEEEES CS
  ADH_zinc_N  1 gvGlaavqlAkalGaeviavds 22
                gvGl a  l  +lG+  +++++
  KIR63516.1 53 GVGLGADRLPMILGCDAVGTAP 74
                7888888888899998888865 PP

  == domain 2  score: 61.7 bits;  conditional E-value: 1.5e-20
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgeeefd 98 
                 gv +aav+lA alG +v+a+++++ k++  ++lGa+++         +   +l   e vdvv+e+vG +at++ +lk+++p  r+vv G+  ++e +++
  KIR63516.1 162 GVATAAVALAVALGKRVYATSRDAGKRQRIAELGATALEPG------A---RLP--ERVDVVIETVG-EATFDHSLKSAAPMARIVVSGAtAGHEPKVN 248
                 8999******************************9987655......3...445..688********.**********************6555555** PP

                 HHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  99 lrnlllkeksilGsllgslreefkealdlla 129
                 lr++++ ++ ilG+ +g+ + e+ e+l ++a
  KIR63516.1 249 LRRVFAMQLEILGTSMGT-PGELTELLTFCA 278
                 ******************.9****9998876 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.8e-07   0.00082       2      42 ..      32      72 ..      31     119 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.8e-07
                TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEE CS
       ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGe 42
                ++v+++v+a++i++ Dl+ l+g      +lp+ilG ++vG+
  KIR63516.1 32 DWVTVQVRASSINHHDLWSLRGVGLGADRLPMILGCDAVGT 72
                89**************************************8 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.6   8.3e-07    0.0037      17      97 ..     142     237 ..     137     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 8.3e-07
                  EETTCEETCB---EEEEEST.SHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEE................HCHHHHHHHHHHHH-SEEEE CS
  AlaDh_PNT_C  17 gtlaGgvpgvepakvlviGg.GvaGlqAiatakglgakVtvlDvrparleqleslgakfvev................lksqeellaeavkeadvvig 97 
                   t  G+v   e+  vlv G+ G + ++A+a a++lg +V+++  ++ +++++ +lga+ +e                  +   ++l++a+  a +v++
   KIR63516.1 142 LTTKGRVD--EADAVLVQGAgGGVATAAVALAVALGKRVYATSRDAGKRQRIAELGATALEPgarlpervdvvietvgEATFDHSLKSAAPMARIVVS 237
                  56678888..55567777752356799*******************************9998777777777777666555555566666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2308.17
//
Query:       KIR63517.1  [L=175]
Description: aminoglycoside adenylyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-06   26.5   0.1    6.5e-06   26.0   0.1    1.3  1  Aminoglyc_resit  Aminoglycoside-2''-adenylyltransferase


Domain annotation for each model (and alignments):
>> Aminoglyc_resit  Aminoglycoside-2''-adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   3.6e-10   6.5e-06       4      48 ..       4      48 ..       1      74 [. 0.80

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 3.6e-10
  Aminoglyc_resit  4 lqvelihkllaaadkinlplwlqggwaidaklgrvtrkhedidla 48
                      q+  i + ++ a  + + lwl+ggwa+d  lg vtr h d+d  
       KIR63517.1  4 RQLAAIAETVTVARVVGVALWLRGGWAMDFVLGEVTRPHVDVDWY 48
                     567777888888889999************************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1315.57
//
Query:       KIR63518.1  [L=297]
Description: hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-08   31.8   0.1    2.5e-05   23.0   0.0    2.1  2  PAF-AH_p_II      Platelet-activating factor acetylhydrolase, 
    1.3e-05   24.2   0.0    2.3e-05   23.4   0.0    1.4  1  Chlorophyllase2  Chlorophyllase enzyme
    1.9e-05   24.1   3.9       0.15   11.3   0.0    3.0  2  Hydrolase_4      Serine aminopeptidase, S33
    0.00015   21.8   0.0    0.00029   20.9   0.0    1.4  1  Abhydrolase_4    TAP-like protein
     0.0009   18.8   0.9      0.055   12.9   0.4    2.5  3  Peptidase_S9     Prolyl oligopeptidase family
      0.003   17.3   0.0     0.0052   16.6   0.0    1.3  1  Abhydrolase_5    Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.031   13.3   0.4       0.11   11.4   0.4    1.9  1  Chlorophyllase   Chlorophyllase


Domain annotation for each model (and alignments):
>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   9.6e-09   2.5e-05      97     134 ..      63     100 ..      49     122 .. 0.85
   2 !    6.8   0.0    0.0008       2.1     221     258 ..     141     180 ..     133     183 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 9.6e-09
                  SS-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE- CS
  PAF-AH_p_II  97 kekyPlivFsHGLgafRtlYsalcielAskGfvvaavE 134
                  ++++P++vFsHGL +  +l + l    A+ Gfvvaa  
   KIR63518.1  63 PGRFPVVVFSHGLDSLPALHAPLTSRWAAAGFVVAAPA 100
                  589********************************964 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0008
                  GTT-EEEEEEEEEEETHHHHHHHHHHHH-..TTS-EEEEE CS
  PAF-AH_p_II 221 lKdnldtskvaviGHsFGgAtvikslsed..teFrcaial 258
                  l ++ld ++ a +GHs Gg t++  l+     + r +i+l
   KIR63518.1 141 LAGHLDVARFAAAGHSAGGFTTAGMLTSGhpPRLRAGIVL 180
                  6789*****************9966655433788888876 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0     9e-09   2.3e-05       3     107 ..      47     165 ..      45     180 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 9e-09
  Chlorophyllase2   3 PkpllvvaPtea.....geYpvllflhGylllnslYsqlLkhiashgfivvapqlyk...vaeada.keiksaakvlnWlakgLesvlp..... 82 
                      P+p+ v +P        g++pv++f hG+  l+ l   l ++ a  gf+v ap   +    a + + +++++  +    l ++L  +l      
       KIR63518.1  47 PLPVTVWYPAARggvapGRFPVVVFSHGLDSLPALHAPLTSRWAAAGFVVAAPAYPHtrrGAARFTrADVRHQPADGWRLIRHLV-RLDtrrgd 139
                      8888888887642222279**********************************55443333334444777776665555777766.34434543 PP

  Chlorophyllase2  83 .eevepdlsklalsgHSrGgktafal 107
                          + d+ ++a +gHS+Gg t + +
       KIR63518.1 140 pLAGHLDVARFAAAGHSAGGFTTAGM 165
                      3334457789999*******887766 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   2.7   0.00019      0.49       6     111 ..      68     185 ..      64     193 .. 0.69
   2 !   11.3   0.0   5.8e-05      0.15     191     219 ..     193     221 ..     185     236 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00019
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpel...........plfllGhSmGGliall 92 
                  vvv++HGl +     a l+ ++aa+Gf v+a  +  h r + +r   +++ +  +D   +++++++   ++           ++   GhS GG++++ 
   KIR63518.1  68 VVVFSHGLDSLPALHAPLTSRWAAAGFVVAAPAY-PHTRRGAARFTRADVRHQPADGWRLIRHLVRLDTRRgdplaghldvaRFAAAGHSAGGFTTAG 164
                  6888888888888888888888888887776543.3555555555555555555555555555553333333345555666677889*********** PP

  Hydrolase_4  93 yl.lrypdkva.glilsaPal 111
                  +l   +p++++ g++l++  l
   KIR63518.1 165 MLtSGHPPRLRaGIVLAGGGL 185
                  998899999999999998766 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 5.8e-05
  Hydrolase_4 191 tlPllllhGeaDkvvdpeasrelyerlgs 219
                  t+P+l++hG+aD+vv  +  r++y+r + 
   KIR63518.1 193 TAPVLFVHGDADPVVGVAVGRAAYARTPG 221
                  68**********************99875 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.1e-07   0.00029      34      78 ..     193     239 ..     185     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.1e-07
  Abhydrolase_4  34 aapvLllqnerDpaTPyegakklakalgg.avlvtvegeGHgala.a 78 
                    +apvL++ +  Dp+++ + ++++  + +g a  +tv+g++Hg++   
     KIR63518.1 193 TAPVLFVHGDADPVVGVAVGRAAYARTPGpAGFLTVTGGDHGTYLtP 239
                    58*********************9999999*************9844 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         2   5.1e+03      10      21 ..      89     100 ..      86     109 .. 0.79
   2 !   12.9   0.4   2.1e-05     0.055      61      94 ..     145     179 ..     141     183 .. 0.85
   3 ?    3.5   0.0     0.016        42     143     167 ..     193     217 ..     188     259 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2
                   HHCCT-EEEEE- CS
  Peptidase_S9  10 ladrGyvvvvan 21 
                   +a++G+vv+++ 
    KIR63518.1  89 WAAAGFVVAAPA 100
                   679999999875 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.1e-05
                   --GGGEEEEEETHHHHHHHHHHH.H-GGG-SEEEE CS
  Peptidase_S9  61 vdserlaitGgSyGGyltgaaln.qrpdlFkaava 94 
                    d  r a+ G+S+GG++t+ +l+  +p + +a++ 
    KIR63518.1 145 LDVARFAAAGHSAGGFTTAGMLTsGHPPRLRAGIV 179
                   677899****************9889988888876 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.016
                   --EEEEEEETT-SSS-THHHHHHHH CS
  Peptidase_S9 143 ypplLlihGlaDdrvppaealklva 167
                   ++p+L++hG+aD  v +a +   +a
    KIR63518.1 193 TAPVLFVHGDADPVVGVAVGRAAYA 217
                   579**********998776655554 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     2e-06    0.0052      53     143 ..     144     236 ..     133     243 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2e-06
  Abhydrolase_5  53 apklekfvvgGhslGGvvasrfaaeee..kiegvvflasYPekdelselskkvlsivgteDgvlnvkslekakkflpkdtkvvsieGgnhagf 143
                    + ++ +f  +Ghs GG  ++ + ++ +  ++ + + la     + +   + +vl + g+ D v+ v   + a  + p  + ++++ Gg+h  +
     KIR63518.1 144 HLDVARFAAAGHSAGGFTTAGMLTSGHppRLRAGIVLAGGGLAGAFAGPTAPVLFVHGDADPVVGVAVGRAAYARTPGPAGFLTVTGGDHGTY 236
                    5578899*************99987644699999999999999***********************************************876 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   4.4e-05      0.11      32     142 ..      47     171 ..      28     191 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.4e-05
  Chlorophyllase  32 PkpliivtPaea.....GtypvvlflhGtllsnkfyskllnhiashGfivvaPqlykllp.Psaqdeidsaaevie.Wlseglkavlp......t 113
                     P p+ +  Pa +     G +pvv+f hG       ++ l    a+ Gf+v aP   +           d   + ++ W      + l+       
      KIR63518.1  47 PLPVTVWYPAARggvapGRFPVVVFSHGLDSLPALHAPLTSRWAAAGFVVAAPAYPHTRRgAARFTRADVRHQPADgWRLIRHLVRLDtrrgdpL 141
                     6666666665542122279***********99*********************875543323333333333222222322222222221121114 PP

  Chlorophyllase 114 sveanlsklalvGhsrGGkt.afalalgys 142
                       + ++ ++a +Ghs GG t a  l+ g+ 
      KIR63518.1 142 AGHLDVARFAAAGHSAGGFTtAGMLTSGHP 171
                     555677788888888888541444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2063.65
//
Query:       KIR63519.1  [L=268]
Description: hypothetical protein TK50_20250 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-28   97.4   0.0    8.9e-28   97.0   0.0    1.2  1  Acetyltransf_5  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_5  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.0     5e-32   8.9e-28       1     100 [.      33     130 ..      33     131 .. 0.96

  Alignments for each domain:
  == domain 1  score: 97.0 bits;  conditional E-value: 5e-32
  Acetyltransf_5   1 LRyevFreemgaegeaaapeldiDefDavcdhllvideae.evVGtyRllrpdeaerlegfysesefdlsklaalrrrllElgRscvhpeyRnkr 94 
                     LR+evF+ e+ga+ +    +ld+D+ D++cdhl+v++e++ +vVGtyRll+p +  r    y+e efdl++l++lr+ l+E gRscvhpe+R+++
      KIR63519.1  33 LRHEVFATELGATLRPGPVGLDADDLDPYCDHLIVREERTgAVVGTYRLLPPGRTPR---RYAEAEFDLAPLDPLRDVLVEAGRSCVHPEHRSGA 124
                     8***************8889****************999977**************5...6********************************** PP

  Acetyltransf_5  95 alellw 100
                     +++l+w
      KIR63519.1 125 VINLMW 130
                     *****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1808.24
//
Query:       KIR63520.1  [L=233]
Description: alkaline phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-30  104.3   0.0    9.1e-30  103.1   0.0    1.6  2  Response_reg  Response regulator receiver domain
    4.1e-28   97.3   0.2    1.2e-27   95.8   0.1    1.8  2  Trans_reg_C   Transcriptional regulatory protein, C terminal
       0.01   16.2   0.0      0.015   15.6   0.0    1.3  1  FleQ          Flagellar regulatory protein FleQ
  ------ inclusion threshold ------
      0.014   15.4   0.0       0.03   14.4   0.0    1.4  1  B12-binding   B12 binding domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0     2e-33   9.1e-30       2     112 .]      11     120 ..      10     120 .. 0.99
   2 ?   -2.6   0.0       1.4   6.1e+03      86     101 ..     166     181 ..     161     186 .. 0.80

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 2e-33
                   EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEEE CS
  Response_reg   2 livdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddfl 98 
                   l+v+Ddp ++ell+  l+ +g+ +va+a++g++al+ +k +++dl++lD+++p++dG+e+++++re    +pv++lta+++ +d++++l +g dd++
    KIR63520.1  11 LVVEDDPNILELLSASLRFAGF-DVATATSGSAALHAAKDHRPDLVVLDVMLPDLDGFEVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYV 106
                   9*********************.************************************************************************** PP

                   ESSG-HHHHHHHHH CS
  Response_reg  99 sKpfdpeeLlkale 112
                   +Kpf+ eeL+++++
    KIR63520.1 107 TKPFSLEELTARIR 120
                   **********9985 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.4
                   HHHHHHCTESEEEESS CS
  Response_reg  86 avealkagaddflsKp 101
                   + ++l ++a+ +lsK 
    KIR63520.1 166 LLRYLMLNANRVLSKA 181
                   6788999999999996 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.94   4.2e+03      42      59 ..     108     125 ..     100     131 .. 0.65
   2 !   95.8   0.1   2.7e-31   1.2e-27       1      77 []     154     228 ..     154     228 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.94
                  HTHHHHHHHHHHHHHHHT CS
  Trans_reg_C  42 ddrtvdvhisrLRkkLed 59 
                     +++   +r+R  L+ 
   KIR63520.1 108 KPFSLEELTARIRAVLRR 125
                  555666667788888876 PP

  == domain 2  score: 95.8 bits;  conditional E-value: 2.7e-31
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  g++v+l+p+efklL++L+ n++rv+s++++l++vw++d+ +dd+ v+++is+LR+k+++   +prlI+t+rgvGY+l
   KIR63520.1 154 GQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVWNYDFRGDDNIVESYISYLRRKVDN--TQPRLIHTLRGVGYVL 228
                  689********************************************************..57************87 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.4e-06     0.015       1      83 [.       9      94 ..       9     121 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.4e-06
        FleQ  1 kiLvidddaerrrdletiLeFlgeeveavsseel..saaleessseala.vilgsvssleealealaekdphlPvlllgesdea.ee 83
                ++Lv++dd +  + l++ L+F g +v + +s ++   aa+ ++++ +++ v+l + +   e ++ l e     Pv+ l+ +d+  ++
  KIR63520.1  9 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAalHAAKDHRPDLVVLdVMLPDLD-GFEVIRMLREGGTRTPVVFLTARDATdDK 94
                58***********************88888887743333333333322224444544.78899999999999999999988877544 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   6.6e-06      0.03      17      85 ..      20      83 ..      15      84 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.6e-06
  B12-binding 17 lavlaaalrdagfeVqllganvenedivaairaekpdvvglSalltsqleavkelvellkrirprvkvv 85
                 l +l a lr agf+V      ++  + + a+++++pd+v+l + +   l++++ ++++l++ + r++vv
   KIR63520.1 20 LELLSASLRFAGFDVATA---TSGSAALHAAKDHRPDLVVLDV-MLPDLDGFE-VIRMLREGGTRTPVV 83
                 568999*********544...33378999**************.999999885.566666666778877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1667.48
//
Query:       KIR63521.1  [L=400]
Description: ornithine--oxo-acid aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.3e-113  378.9   0.0   2.6e-113  378.7   0.0    1.0  1  Aminotran_3      Aminotransferase class-III
  ------ inclusion threshold ------
       0.15   11.4   0.0       0.24   10.6   0.0    1.4  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.7   0.0    3e-117  2.6e-113       3     405 ..      16     397 ..      14     398 .. 0.97

  Alignments for each domain:
  == domain 1  score: 378.7 bits;  conditional E-value: 3e-117
                  -TTB--SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHH CS
  Aminotran_3   3 areednlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAv 100
                  a+++++l++v++ aeG++ltdvdg+rylD +++++++n+Gh+hP++++a+++q++ l+++s +a+ +++ ++++++l++l +k  d+v+ +n+G+eAv
   KIR63521.1  16 AHNYHPLPVVVSSAEGAWLTDVDGRRYLDCLAGYSALNFGHRHPRLIAAAHAQLDRLTLTS-RAFIHDQFADFCRELAELCGK--DMVLPMNTGAEAV 110
                  68899999*****************************************************.*********************..************* PP

                  HHHHHHHHHHHHHTS..HCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEE CS
  Aminotran_3 101 etAlKlarkyarekk..atektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAv 196
                  et +K+ark+ + +k     +++i+  +g+fHGrt + +s +++ +  +++fgp +p+++ ++y d                 l ale++++d++ Av
   KIR63521.1 111 ETGIKVARKWGYRVKgvPAGQANIVVAEGNFHGRTTTIVSFSTD-EDARADFGPYTPGFTVVPYGD-----------------LAALEAAIDDDTVAV 190
                  ***********999988899************************.9*******************9.................999************ PP

                  EE-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTSB--TTTT CS
  Aminotran_3 197 ivEpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgshgsTfgG 293
                  ++Epiqge Gvvv+++++l ++r +c++ +vl+++DE+q+G+GrTG++fA++h +v pD+++l+Kal+gG  p+sav+a+a+v  +l+pg+hgsTfgG
   KIR63521.1 191 LLEPIQGEQGVVVPPAGYLPGVRRVCTERNVLFVADEIQSGLGRTGATFACDHEDVVPDMYLLGKALGGGiVPVSAVAANADVLGVLQPGQHGSTFGG 288
                  ************************************************************************************************** PP

                  -HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTCHHHHHHHHHCTEE-EEETTTEEEE---TT-- CS
  Aminotran_3 294 nplacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevkekeilkkakekGvlilsaGdnvirllppliit 391
                  nplacava +v++++++ +++++ +elg++l +gL+ l  +   +  vRg+Gl  ++++  +   + ++ ++++ + Gvl + ++ ++irl+ppl+it
   KIR63521.1 289 NPLACAVATEVVRLLATGEFQRQSAELGERLHAGLRGLVGR--GLVAVRGRGLWAGLDIDPALM-TGRQACERLMARGVLAKDTHGSTIRLAPPLVIT 383
                  ***************************************77..6999************99988.5699***************************** PP

                  HHHHHHHHHHHHHH CS
  Aminotran_3 392 deeidelleilkka 405
                  +eeid ++ +l ++
   KIR63521.1 384 AEEIDHAVAQLAAV 397
                  *******9998876 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   2.7e-05      0.24      18      57 ..      78     116 ..      60     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.7e-05
                      -SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHH CS
  DegT_DnrJ_EryC1  18 wltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLra 57 
                       +++ ++ ++F +++a+ +g+++++++++G +A++ ++++
       KIR63521.1  78 AFIH-DQFADFCRELAELCGKDMVLPMNTGAEAVETGIKV 116
                      4444.45678************************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2859.58
//
Query:       KIR63522.1  [L=276]
Description: hypothetical protein TK50_20355 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.054   13.7   0.2       0.12   12.6   0.2    1.5  1  Dockerin_1  Dockerin type I domain
       0.17   11.8   7.8       0.57   10.1   7.8    1.7  1  Colicin_V   Colicin V production protein
        1.2    8.9  20.1         12    5.7  20.1    2.3  1  DUF4190     Domain of unknown function (DUF4190)
        2.4    7.4  13.3        8.7    5.6  13.3    1.8  1  UbiA        UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   2.7e-05      0.12      30      49 ..       5      24 ..       2      27 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.7e-05
                SCCCHGGGSTT-SSCESHHH CS
  Dockerin_1 30 sssngkaaDvNgDGrvnalD 49
                ++++ +++D NgDGrv+ +D
  KIR63522.1  5 RNEPATTYDSNGDGRVDERD 24
                688999***********999 PP

>> Colicin_V  Colicin V production protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   7.8   0.00013      0.57      64     128 ..     199     263 ..     173     275 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00013
   Colicin_V  64 flllfllvllivsllgallsklvsktglglldrllGaifGllkglllvv..llllllalvplpkvqe 128
                 + +++ +  +++s++g l ++  +++ +g +d llG++fG+++++l v      +++ +++ ++vq+
  KIR63522.1 199 YGIAVGALGAVLSVFGLLATR--RRHIAGKTDALLGMAFGVAAVVLGVLamTGQFVWPTTDGDWVQR 263
                 344444455566666666666..9999***************9999887523446666666666653 PP

>> DUF4190  Domain of unknown function (DUF4190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  20.1    0.0028        12       1      62 []     176     246 ..     174     246 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0028
     DUF4190   1 lAiasLvlgilgllf........l.iitgivavilGhvAlrqirrsgerGkglAiaGivlGwigllllvll 62 
                 lA+++Lv+g++gl            i +g+++ +l + +l   rr+  +Gk+ A+ G++ G+++++l vl+
  KIR63522.1 176 LATLGLVVGVAGLAAvltgtlagYgIAVGALGAVLSVFGLLATRRRHIAGKTDALLGMAFGVAAVVLGVLA 246
                 688888888888777777888896699****************************************9985 PP

>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  13.3    0.0019       8.7      49     144 ..     139     254 ..     128     260 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0019
        UbiA  49 admertpnRPlvsGris................pkealifaivllilgllllalllnpltallgllalllyvvYt..g.lrlKrrtllg...tvvggia 125
                 +d  rt++RPl++ r                  +  a ++a++ l++g++ la+ l  ++a+ g+++ +l+ v +  g l + rr++ g    ++g ++
  KIR63522.1 139 RD--RTAERPLPADRTDaegearrepvpvvagpKPRASLLATLGLVVGVAGLAAVLTGTLAGYGIAVGALGAVLSvfGlLATRRRHIAGktdALLGMAF 235
                 55..77777777666666677767766666666445666666666666666657777778888888888887777788888888887543315777777 PP

        UbiA 126 fglppllgwaavtgslsll 144
                 ++ +++lg+ a+tg++ ++
  KIR63522.1 236 GVAAVVLGVLAMTGQFVWP 254
                 7799999********9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 1833.76
//
Query:       KIR63523.1  [L=284]
Description: DNA glycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-18   64.4   0.0    9.9e-18   63.9   0.0    1.2  1  H2TH            Formamidopyrimidine-DNA glycosylase H2TH doma
    1.1e-06   28.4   4.8      2e-06   27.5   4.8    1.5  1  zf-FPG_IleRS    Zinc finger found in FPG and IleRS
    1.9e-05   25.2   0.0    4.3e-05   24.1   0.0    1.6  1  Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-termina


Domain annotation for each model (and alignments):
>> H2TH  Formamidopyrimidine-DNA glycosylase H2TH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   1.7e-21   9.9e-18       1      87 [.     135     221 ..     135     226 .. 0.96

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 1.7e-21
                 ---BTTSTTS-HHHHHHHHHT--SBHHHHHHCTTTSCS--HHHHHHHHHHTT--TTSBGGGS-HHHHHHHHHHHHHHHHHHHHTTTT CS
        H2TH   1 LgpeplseaftvdalaerlkkkkrkiktlLLDqklvaGlGNiyadEvLfrakihPerlakslskeelellhqeikevlkeaielgks 87 
                 Lgp+pl+ +++ + +++r+ ++ +++ +lLLDq++vaG G i++ E+Lfra+++P  ++++l+ ++ + l++++++++ +a+e+g+ 
  KIR63523.1 135 LGPDPLRADADPARAYARISRSATPLAALLLDQSVVAGTGLIFVTEALFRAGLSPLLPGRELTPARWRELWADLVHLMAQAVEAGRI 221
                 8**********************************************************************************7764 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   4.8   3.3e-10     2e-06       1      29 [.     253     281 ..     253     282 .. 0.98

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 3.3e-10
                   TSB-TTT--BBEEEECTTEEEEE-TTTT. CS
  zf-FPG_IleRS   1 GepCpRCwryiervgqagrstyfCprCqk 29 
                   G+pC +C+  ++r ++agr+ y+Cp+Cq+
    KIR63523.1 253 GQPCHVCGDEVRRGELAGRNLYWCPTCQP 281
                   9***************************7 PP

>> Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   7.2e-09   4.3e-05       1     101 [.       1      95 [.       1     103 [. 0.75

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 7.2e-09
                     X--HHHHHHHHHHHHHHHTT-EEEEEEE-SSHHHTSTHHHHHTT-.SEEEEEEEEETTEEEEEE..EEEEEEE-TTTEEESS........TTEEE CS
  Fapy_DNA_glyco   1 MPElpEVetvrrglrrhllgkkiakvevlkdktlrgspaafakalkgrkiasvgrrGKyllleldggevlvvhlgmtGrllikeaeeeppkhtkv 95 
                     MPE   ++++++  ++   g+++ + +     + r+  a+ a+ l+g++++  +  GK+ll + ++g +l vhlg+ G++    + e pp   +v
      KIR63523.1   1 MPEGHTIHRLAARHAELFAGAEVRATSP----QGRF--ADGAALLSGTVLDGTEAYGKHLLHHHANGLTLHVHLGLYGKFAD-GSGEPPPPVGQV 88 
                     7777777777777777777766655544....3333..5667799***********************************75.556666667777 PP

                     EEEEG.G CS
  Fapy_DNA_glyco  96 rleld.d 101
                     rl+l+ d
      KIR63523.1  89 RLRLTgD 95 
                     7776643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2307.54
//
Query:       KIR63524.1  [L=457]
Description: flavoprotein oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-56  191.9   0.2    1.8e-56  191.6   0.2    1.1  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    8.3e-21   74.3   1.6    1.1e-18   67.6   0.9    2.8  3  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      5e-19   68.6   0.0    1.5e-18   67.0   0.0    1.8  2  Pyr_redox_dim   Pyridine nucleotide-disulphide oxidoreductase
    4.3e-09   36.4   8.4    0.00084   19.0   0.6    3.7  4  DAO             FAD dependent oxidoreductase
    4.3e-08   32.8   0.0    1.4e-05   24.5   0.0    2.2  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    9.1e-08   32.2   0.7      0.018   15.3   0.1    2.7  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    8.6e-06   25.1   9.7       0.67    9.0   0.0    4.8  5  FAD_binding_2   FAD binding domain
    2.8e-05   23.0   0.5       0.44    9.2   0.2    3.3  4  HI0933_like     HI0933-like protein
    0.00011   22.2   4.8        1.1    9.2   0.2    4.1  4  NAD_binding_9   FAD-NAD(P)-binding
    0.00071   19.0   5.0       0.13   11.6   0.1    3.0  3  FAD_oxidored    FAD dependent oxidoreductase
     0.0021   17.2   2.3      0.097   11.7   0.6    2.4  2  GIDA            Glucose inhibited division protein A
     0.0021   17.3   0.0     0.0036   16.5   0.0    1.3  1  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
     0.0033   16.5   0.4      0.093   11.8   0.2    2.2  2  Lycopene_cycl   Lycopene cyclase protein
     0.0059   16.5   0.5     0.0095   15.8   0.5    1.3  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0069   16.8   0.5      0.016   15.6   0.1    1.8  1  NAD_binding_7   Putative NAD(P)-binding
       0.01   16.1   0.1      0.055   13.7   0.1    2.1  2  TrkA_N          TrkA-N domain
  ------ inclusion threshold ------
      0.026   13.8   5.0        4.1    6.7   0.1    3.3  3  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.036   13.5   0.2      0.061   12.8   0.2    1.3  1  adh_short       short chain dehydrogenase
      0.077   12.6   0.2       0.14   11.7   0.2    1.5  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.12   11.9   0.0       0.18   11.3   0.0    1.2  1  DUF1188         Protein of unknown function (DUF1188)
       0.39    9.5   2.9        3.1    6.5   0.8    2.6  3  Trp_halogenase  Tryptophan halogenase
        1.5    8.0   6.4       0.19   10.9   0.5    2.2  3  FAD_binding_3   FAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.6   0.2   2.2e-59   1.8e-56       2     282 ..       4     292 ..       3     314 .. 0.92

  Alignments for each domain:
  == domain 1  score: 191.6 bits;  conditional E-value: 2.2e-59
                  SEEEE--SHHHHHHHHHHHH....HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC CS
                  xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq....agakvtlvelegtclnggcllskallgvaedaeias...evvkklnqgielllgeevvkidpgkkkvklekkke 92 
                  +++v+Gg +AG+aaa ++++    + ++++ +e++  + +  c +++++ gv  +++++      + +   +i+++l++ev++id ++++v+ +++++
   KIR63524.1   4 RLIVVGGDAAGMAAASQARRrrdrSDLEIVAFERGHFTSYSACGIPYWISGVVPERDQLIardPATFRADFDIDVRLRHEVTAIDLARREVVARDLDG 101
                  689*****************99989*******9999999*************9999988799*888999999*************************9 PP

                  TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T....SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  93 gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp....krivvvGgGyiGvElAaalaklgkevtlveardrllraldkels 186
                  g e +  +d+lv AtG+ p++++    +  ++++v+tld+a al+  l      +r+vvvGgGyiGvE+A al + g  vtlve++d+++ ++d++++
   KIR63524.1 102 GGEVREPFDELVYATGAVPKRPDWADPEVRGVFGVQTLDDASALRAWLDAepapRRAVVVGGGYIGVEMAEALIQRGLSVTLVEQADQPMATVDPDMA 199
                  **********************7776666888999*********8766668899******************************************** PP

                  HHHHHHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBES.STTEEE-GGGCTECC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  Pyr_redox_2 187 aaleealekeGvevklgtsvkeidgngekle.vvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtn.vpgiyaiGDvaggkg 282
                  a +++a++  G+++++g +v+ +d+++ +++ vv+ dg  ++ad vv++ Gvrp+t+l+ e++gl++   ggi vd+++r+  vpg++a+GD++   +
   KIR63524.1 200 ALVADAMRGIGIDIRTGVEVTGLDERDGRVSaVVTADGP-LPADVVVLGLGVRPDTALA-EAAGLPIGLSGGIRVDRRMRVPgVPGVWAAGDCV---E 292
                  **************************9988868888887.9******************.*********************88**********9...2 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.074        60       1      23 [.       4      26 ..       4      37 .. 0.85
   2 ?   -2.3   0.0       8.6     7e+03      55      71 ..      76      92 ..      70      98 .. 0.73
   3 !   67.6   0.9   1.3e-21   1.1e-18       1      80 [.     157     236 ..     157     237 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.074
                EEEEECSSHHHHHHHHHHHHTTS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgk 23
                +++vvGg+  g+ +A+ +++ ++
  KIR63524.1  4 RLIVVGGDAAGMAAASQARRRRD 26
                689*************9998775 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 8.6
                EEEECSEEEEEEEEETT CS
   Pyr_redox 55 ievllntkveeiegsed 71
                i+v+l ++v++i+   +
  KIR63524.1 76 IDVRLRHEVTAIDLARR 92
                78888888888875555 PP

  == domain 3  score: 67.6 bits;  conditional E-value: 1.3e-21
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEEET CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgvesvklkd 80 
                 ++vvvGgGyig+E+A+al + g +Vt+ve +d+++   D+++++++++ ++  gi+++++ +v+ +++ +  v++v+++d
  KIR63524.1 157 RAVVVGGGYIGVEMAEALIQRGLSVTLVEQADQPMATVDPDMAALVADAMRGIGIDIRTGVEVTGLDERDGRVSAVVTAD 236
                 68*****************************************************************8887799999876 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       6.6   5.4e+03      61      77 ..     159     176 ..     155     189 .. 0.73
   2 !   67.0   0.0   1.9e-21   1.5e-18       3     104 ..     336     438 ..     334     442 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 6.6
                    BEEEEEEECTTHHH.HHH CS
  Pyr_redox_dim  61 kvlGahivGpgage.liq 77 
                     v+G   +G +++e liq
     KIR63524.1 159 VVVGGGYIGVEMAEaLIQ 176
                    688999999877774555 PP

  == domain 2  score: 67.0 bits;  conditional E-value: 1.9e-21
                    EEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTH.TEEEEEEEEETTTTBEEEEEEEC.TTHHHHHHHHHHHHHTTSBHH.HHHTS CS
  Pyr_redox_dim   3 tvvftdpevasvGlteeeAkaagieikvgkfpfkangralayae.tkgfvKlvadaktgkvlGahivG.pgageliqelavaikagltve.dladt 95 
                     ++++++ev+ +Gl e +A a g  ++ ++++ ++++ra +y+  + ++vKl+a++++g++lGa+ivG  +a+++i+ lava+ +++tv+ + a +
     KIR63524.1 336 VTKVCELEVGRTGLRERDAAASG--FEFVSVRAESTNRAGYYPGaRTMTVKLIAERSSGRLLGAQIVGwSEAAKRIDTLAVALWNEMTVDeMTALD 429
                    57899******************..9999***************9999********************99999*****************77**** PP

                    BSSSSSTGG CS
  Pyr_redox_dim  96 ihihPtlse 104
                    ++++P+++ 
     KIR63524.1 430 LGYAPPYAP 438
                    ******983 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.15   1.2e+02       2      32 ..       5      41 ..       4      49 .. 0.82
   2 ?   -0.8   0.0       1.1   9.2e+02     162     202 ..      77     118 ..      70     137 .. 0.64
   3 !   19.0   0.6     1e-06   0.00084       2      32 ..     158     190 ..     157     195 .. 0.92
   4 !   18.0   0.1   2.2e-06    0.0018     144     206 ..     195     255 ..     190     271 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.15
                EEEECTSHHHHHHHHHHHHTT......EEEEESSSST CS
         DAO  2 vviiGGGiiGlstAyeLarrg......Vtllekgdia 32
                ++++GG  +G+++A ++ rr       ++ +e+g++ 
  KIR63524.1  5 LIVVGGDAAGMAAASQARRRRdrsdleIVAFERGHFT 41
                69***************8764578999*999999554 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.1
                 EEEESECEEEEEEEETCEEEEE..EECT.EEE.EEEEEEEE--GG CS
         DAO 162 eilegtevtgleeedgkvwgve..rttp.gen.daadavVnaaGa 202
                 ++++++evt+++  +    +v   +    ge+ + +d +V a+Ga
  KIR63524.1  77 DVRLRHEVTAIDLAR---REVVarDLDGgGEVrEPFDELVYATGA 118
                 677778888885532...222223333445554566788888887 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 1e-06
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSST CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgdia 32 
                  v++GGG+iG+  A +L +rg  Vtl+e++d++
  KIR63524.1 158 AVVVGGGYIGVEMAEALIQRGlsVTLVEQADQP 190
                 69***************************9876 PP

  == domain 4  score: 18.0 bits;  conditional E-value: 2.2e-06
                 EHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHH.H CS
         DAO 144 dpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gendaadavVnaaGawsd.l 206
                 dp  ++a +a+a++  G++i++g evtgl+e+dg+v+ v  +t+ g    ad vV+  G+  d  
  KIR63524.1 195 DPD-MAALVADAMRGIGIDIRTGVEVTGLDERDGRVSAV--VTAdGPL-PADVVVLGLGVRPDtA 255
                 555.566678889999***********************..6665876.5699***999887753 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0065       5.3     165     268 ..       3     119 ..       1     122 [. 0.74
   2 !   24.5   0.0   1.7e-08   1.4e-05     163     305 .]     154     288 ..     124     288 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0065
  Pyr_redox_3 165 qkvvViGgknSavDaAlelvrk....gaeVtvvtrgseiekeesdpsyslkpdienrleelvke.......ekikvlfnaevkeikekeeeykvk.te 250
                  q+++V+Gg   ++ aA +  r+    + e+  + rg+  + +   + y+++ ++ +r + + +          i+v  ++ev++i+   +e+  +  +
   KIR63524.1   3 QRLIVVGGDAAGMAAASQARRRrdrsDLEIVAFERGHFTSYSACGIPYWISGVVPERDQLIARDpatfradFDIDVRLRHEVTAIDLARREVVARdLD 100
                  78999999999999999988775555778888889988888888899999999888876665557777665349999999999999887777666344 PP

  Pyr_redox_3 251 dgkkvev.kddvvlatGyk 268
                   g +v++  d+ v+atG  
   KIR63524.1 101 GGGEVREpFDELVYATGAV 119
                  4555555367888889875 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 1.7e-08
  Pyr_redox_3 163 agqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeey.kvktedgkkvevkd 259
                  a ++ vV+Gg+  +v++A  l+++g +Vt+v + +       +p +++ pd+   ++++++   i++ +  ev+ ++e++ ++  v t+dg  +   d
   KIR63524.1 154 APRRAVVVGGGYIGVEMAEALIQRGLSVTLVEQAD-------QPMATVDPDMAALVADAMRGIGIDIRTGVEVTGLDERDGRVsAVVTADG-PLP-AD 242
                  46799**************************9986.......58999*************9955***************999834456665.433.35 PP

  Pyr_redox_3 260 dvvlatGykpdlsflkkslfeldedgrpvlteeteetnvpglflaG 305
                   vvl +G +pd+ + +++++ +  +g + ++       vpg++ aG
   KIR63524.1 243 VVVLGLGVRPDTALAEAAGLPIGLSGGIRVDRRMRVPGVPGVWAAG 288
                  55566*******9999888877777777777777777777776666 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   2.2e-05     0.018       1      29 [.       7      39 ..       7      46 .. 0.87
   2 !   14.5   0.1   3.7e-05      0.03       1      31 [.     160     190 ..     160     195 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.2e-05
                   EE--SHHHHHHHHHHHCC....TEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka....gfdvlllekrd 29
                   +vG+ ++G++aA+ ++++    +++++ +e+++
     KIR63524.1  7 VVGGDAAGMAAASQARRRrdrsDLEIVAFERGH 39
                   8***************966667889*****986 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.7e-05
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31 
                    +vG+G  G  +A +L ++g++v+l+e++d++
     KIR63524.1 160 VVGGGYIGVEMAEALIQRGLSVTLVEQADQP 190
                    8**************************9986 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0032       2.6       2      22 ..       5      25 ..       4      48 .. 0.88
   2 ?    0.5   0.0      0.31   2.5e+02     155     238 ..      75     149 ..      50     154 .. 0.75
   3 !    8.4   1.0    0.0013         1       2      33 ..     158     189 ..     157     194 .. 0.93
   4 ?    1.7   0.0      0.13   1.1e+02     142     180 ..     197     235 ..     190     243 .. 0.86
   5 !    9.0   0.0   0.00082      0.67     371     408 ..     265     296 ..     256     301 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0032
                   EEEE--SHHHHHHHHHHHHTT CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaG 22
                   +iV+G+ +AG+aAA +a+++ 
     KIR63524.1  5 LIVVGGDAAGMAAASQARRRR 25
                   69**************99875 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.31
                    TEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTS CS
  FAD_binding_2 155 gvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgrallkellgaaaeaettnapavtGdglalalraga 238
                    ++d++ r+e++++   d   + +v++++++g+evr   + +v atg++++      ++  a+ e+ ++ +v   ++a+alra +
     KIR63524.1  75 DIDVRLRHEVTAI---DLARREVVARDLDGGGEVREPFDELVYATGAVPK------RPDWADPEVRGVFGVQTLDDASALRAWL 149
                    3777777777777...4466889999999******9999**********8......4555666666666666666666666665 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0013
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqe 33 
                    ++V+G+G  G   A ++ ++Gl+v++ve++++
     KIR63524.1 158 AVVVGGGYIGVEMAEALIQRGLSVTLVEQADQ 189
                    69**************************9875 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.13
                    HHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEE CS
  FAD_binding_2 142 allarlvesarkagvdfqerteadeLivedgrvtGavve 180
                     ++a +++++r  g+d+++  e++ L  +dgrv+ +v +
     KIR63524.1 197 DMAALVADAMRGIGIDIRTGVEVTGLDERDGRVSAVVTA 235
                    57777888888889************999*****99976 PP

  == domain 5  score: 9.0 bits;  conditional E-value: 0.00082
                    EES-EEEBETTSBESTTEEESSBTEEE-STCEESSSST CS
  FAD_binding_2 371 ytmgGvetdengrvldadgqpipGLYAaGevaaggvhg 408
                    +  gG+++d ++rv       +pG +AaG +    +h 
     KIR63524.1 265 GLSGGIRVDRRMRV-----PGVPGVWAAGDCV-ETLHR 296
                    568***********.....99*********99.66665 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00061       0.5       2      25 ..       4      27 ..       3      36 .. 0.87
   2 ?   -3.5   0.0       3.9   3.2e+03     123     163 ..      75     117 ..      73     119 .. 0.80
   3 !    9.2   0.2   0.00054      0.44       3      35 ..     158     190 ..     156     195 .. 0.92
   4 ?    0.5   0.0      0.23   1.9e+02     117     163 ..     204     249 ..     197     261 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00061
                 SEEEE--SHHHHHHHHHHHHTT-- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkr 25
                 ++iv+Gg aAG+ aA +a++r  r
   KIR63524.1  4 RLIVVGGDAAGMAAASQARRRRDR 27
                 589***************887765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.9
                  T-EEE-S--EEEEECETTE.EEEEE.TTEEEE..ESEEEE--- CS
  HI0933_like 123 gvklrletevksvekeedgkfrvktkseeele..adklvlAtG 163
                  ++++rl++ev++++  + +++  ++++++e++   d+lv AtG
   KIR63524.1  75 DIDVRLRHEVTAIDLARREVVARDLDGGGEVRepFDELVYATG 117
                  5789999999999999999888888887777633688999988 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00054
                  EEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like   3 viviGgGaAGlmaAisaakrgkrVlllekakkl 35 
                   +v+GgG  G+  A+++ +rg +V+l+e+a+++
   KIR63524.1 158 AVVVGGGYIGVEMAEALIQRGLSVTLVEQADQP 190
                  79***************************9886 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.23
                  HHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 117 kelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                   +++  g+++r+  ev++++++++++  v t  ++ l ad +vl +G
   KIR63524.1 204 DAMRGIGIDIRTGVEVTGLDERDGRVSAVVT-ADGPLPADVVVLGLG 249
                  5678899************998888777777.99*********9988 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0       0.2   1.7e+02       2      36 ..       7      40 ..       6      49 .. 0.87
   2 ?    1.2   0.0      0.41   3.3e+02     114     154 ..      73     117 ..      60     119 .. 0.67
   3 !    9.2   0.2    0.0014       1.1       1      35 [.     159     189 ..     159     197 .. 0.86
   4 !    8.7   0.1     0.002       1.6     105     154 ..     199     249 ..     194     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.2
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsep 36
                   +vG+ ++G+a++ +  +r+ ++s+lei  f++ ++
     KIR63524.1  7 VVGGDAAGMAAASQARRRR-DRSDLEIVAFERGHF 40
                   8999999*****9999996.9**********9655 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.41
  NAD_binding_9 114 gvtvevh.raevvdleeradgqavll.adgasl..aadaVvLAlG 154
                    +++++v  r+ev++++ +++++  +  ++g ++   +d++v A+G
     KIR63524.1  73 DFDIDVRlRHEVTAIDLARREVVARDlDGGGEVrePFDELVYATG 117
                    455555338888888888888744442555443349********9 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0014
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdp.se 35 
                    ++vG+G  G+ ++e+L++r      l++tl+++ ++
     KIR63524.1 159 VVVGGGYIGVEMAEALIQR-----GLSVTLVEQaDQ 189
                    69*****************.....599999999444 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.002
  NAD_binding_9 105 eellarlpegvtvevhra.evvdleeradgqavlladgaslaadaVvLAlG 154
                    ++l+a++ +g+ +++ ++ ev+ l+er++++  + + +  l ad VvL lG
     KIR63524.1 199 AALVADAMRGIGIDIRTGvEVTGLDERDGRVSAVVTADGPLPADVVVLGLG 249
                    5678888889999998777***********9888888889********999 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   0.00016      0.13       2      21 ..       5      24 ..       5      30 .. 0.90
   2 !    6.4   0.7    0.0061       4.9       3      31 ..     159     187 ..     158     190 .. 0.94
   3 ?    1.9   0.0      0.14   1.1e+02      82     127 ..     192     236 ..     186     245 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00016
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAara 21
                  ++VvGG++aG+aAA +A r+
    KIR63524.1  5 LIVVGGDAAGMAAASQARRR 24
                  58***************996 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0061
  FAD_oxidored   3 vVvGGgpaGvaAAiaAaraGakvlLveer 31 
                   vVvGGg  Gv  A a  ++G +v Lve+ 
    KIR63524.1 159 VVVGGGYIGVEMAEALIQRGLSVTLVEQA 187
                   8**************************86 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.14
  FAD_oxidored  82 ntfepevakavleemlaeagvtvllntrlvevekegkriesvtves 127
                   +t++p++a+ v+++m    g+++ ++ ++++ + +++r+ +v++++
    KIR63524.1 192 ATVDPDMAALVADAMRGI-GIDIRTGVEVTGLDERDGRVSAVVTAD 236
                   479*********999755.***************999****99864 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.014        11       2      21 ..       5      24 ..       4      36 .. 0.90
   2 !   11.7   0.6   0.00012     0.097       3      29 ..     159     191 ..     157     237 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.014
                EEEE-SSHHHHHHHHHHHHT CS
        GIDA  2 viViGgGhAGceAAlaaarl 21
                +iV+Gg  AG++AA +a r+
  KIR63524.1  5 LIVVGGDAAGMAAASQARRR 24
                69**************9885 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00012
                 EEE-SSHHHHHHHHHHHHTT--EEEE......E CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLi......t 29 
                 +V+GgG  G+e A a+ ++G++v+L+       
  KIR63524.1 159 VVVGGGYIGVEMAEALIQRGLSVTLVeqadqpM 191
                 8*************************4444441 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.4e-06    0.0036     109     221 ..      74     183 ..      70     201 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.4e-06
  K_oxygenase 109 leeqvrfgeeveevepdeeeeeelltveskd.aegeeeelearnlvlgvGtepkiPevlekle....gkervvHsseylerkeellakkriaVvGsGq 201
                  ++  vr  +ev++++  ++e      v  +d + g e +    +lv ++G  pk P+++++      g +++  +s +    +++ a++r +VvG+G 
   KIR63524.1  74 FDIDVRLRHEVTAIDLARRE------VVARDlDGGGEVREPFDELVYATGAVPKRPDWADPEVrgvfGVQTLDDASALRAWLDAEPAPRRAVVVGGGY 165
                  66567888888888888864......566673455556667799**************9975534445555556666666667799************ PP

  K_oxygenase 202 Saaeifedllrrqkkvelkl 221
                   + e++e l++r    +++l
   KIR63524.1 166 IGVEMAEALIQRGL--SVTL 183
                  **********9965..3444 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.072        59       2      32 ..       5      37 ..       4      45 .. 0.77
   2 !   11.8   0.2   0.00011     0.093       3      39 ..     159     193 ..     158     196 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.072
  Lycopene_cycl  2 vvviGaGpAglslAarl..teakpglkvvliea 32
                   ++v+G+ +Ag++ A +    + + +l++v  e 
     KIR63524.1  5 LIVVGGDAAGMAAASQArrRRDRSDLEIVAFER 37
                   79***********99884455667777776665 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00011
  Lycopene_cycl   3 vviGaGpAglslAarlteakpglkvvlieaspsllfp 39 
                    vv+G+G  g+ +A+ l   + gl+v+l+e +++++ +
     KIR63524.1 159 VVVGGGYIGVEMAEAL--IQRGLSVTLVEQADQPMAT 193
                    8***************..99***********999865 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.5   1.2e-05    0.0095       3      36 ..     159     192 ..     157     208 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-05
                 EEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHH CS
     3HCDH_N   3 aviGaGtmGagiaavfasagleVvlvdiseeale 36 
                  v+G G +G ++a++++++gl+V+lv+ +++ ++
  KIR63524.1 159 VVVGGGYIGVEMAEALIQRGLSVTLVEQADQPMA 192
                 69************************99877665 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1     2e-05     0.016       7      39 ..     155     187 ..     151     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2e-05
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleagakvtvvape 39 
                     ++ +vvGgG ++ + ++ l++ g  vt+v ++
     KIR63524.1 155 PRRAVVVGGGYIGVEMAEALIQRGLSVTLVEQA 187
                    5899*************************9887 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       2.1   1.7e+03       2      27 ..       6      33 ..       5      62 .. 0.66
   2 !   13.7   0.1   6.7e-05     0.055       2      48 ..     159     204 ..     158     208 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 2.1
                EEES-SHHHHHHHHHHHHTT..EEEEEE CS
      TrkA_N  2 iiiGlGrvGrslaeeLsegg..kdvvvi 27
                i++G    G++ a + +++   +d  ++
  KIR63524.1  6 IVVGGDAAGMAAASQARRRRdrSDLEIV 33
                7888888888888888774435333333 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 6.7e-05
                 EEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES- CS
      TrkA_N   2 iiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgd 48 
                 +++G G +G ++ae L ++g +v+++++ ++ ++++  +   ++v+d
  KIR63524.1 159 VVVGGGYIGVEMAEALIQRGLSVTLVEQADQPMATVDPDM-AALVAD 204
                 8*****************7746*******99999876443.455555 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1       0.1        81      30      49 ..       4      23 ..       1      28 [. 0.89
   2 ?    5.3   0.2     0.013        11      28      68 ..     155     195 ..     143     207 .. 0.85
   3 ?    6.7   0.1     0.005       4.1      14      50 ..     226     262 ..     222     267 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.1
                 EEEEESTSHHHHHHHHHHHH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakg 49
                 + +v+Gg  aG++A++ a++
   KIR63524.1  4 RLIVVGGDAAGMAAASQARR 23
                 679*************9986 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.013
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHH CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparleqle 68 
                  p + +v+GgG  G++ +++  + g +Vt+++   + +  ++
   KIR63524.1 155 PRRAVVVGGGYIGVEMAEALIQRGLSVTLVEQADQPMATVD 195
                  6689***********************99998777666665 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.005
                  TSEEETTCEETCB---EEEEESTSHHHHHHHHHHHHT CS
  AlaDh_PNT_C  14 ggkgtlaGgvpgvepakvlviGgGvaGlqAiatakgl 50 
                   g++ ++ +  g  pa v+v+G Gv    A+a a+gl
   KIR63524.1 226 DGRVSAVVTADGPLPADVVVLGLGVRPDTALAEAAGL 262
                  57788888999999************99999999987 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   7.5e-05     0.061       3      61 ..     158     216 ..     156     229 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.5e-05
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdr 61 
                 ++v+G++  IG ++a++l+++G +v++v++ ++++++v   + ++ ++ +  i +D+++ 
  KIR63524.1 158 AVVVGGG-YIGVEMAEALIQRGLSVTLVEQADQPMATVDPDMAALvADAMRGIGIDIRTG 216
                 6777776.5****************************99999999888888999998865 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00017      0.14       3      39 ..     158     194 ..     156     232 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
                     EEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHH CS
  UDPG_MGDP_dh_N   3 isviGlGYvGlvtaavlaeighevigvDideekvdkl 39 
                      +v+G GY+G+ +a +l ++g  v++v   ++  +++
      KIR63524.1 158 AVVVGGGYIGVEMAEALIQRGLSVTLVEQADQPMATV 194
                     579************************9887766665 PP

>> DUF1188  Protein of unknown function (DUF1188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00023      0.18      29      84 ..     142     197 ..     131     224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00023
                 HHHHHHHHTT--E..EEEEEES-CCCHHHHHHHHCCC.EEEEEEESSGGGGGGSSST CS
     DUF1188  29 aeavleyleeeeleeknvlviGaYltGaaiakkLskk.eevtlvDiephlkellekd 84 
                 a+a++++l+ e   +++++v+G    G+ +a++L ++   vtlv+  ++    +++d
  KIR63524.1 142 ASALRAWLDAEPA-PRRAVVVGGGYIGVEMAEALIQRgLSVTLVEQADQPMATVDPD 197
                 7899*****8877.999999999999*********9999*****9888777666666 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.14   1.2e+02       2      30 ..       5      34 ..       4      43 .. 0.71
   2 ?    6.5   0.8    0.0039       3.1       3      41 ..     159     194 ..     157     214 .. 0.83
   3 ?   -0.2   0.0      0.41   3.3e+02     166     203 ..     208     244 ..     195     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.14
                    EEEE--SHHHHHHHHHHHHHTTTS.SEEEE CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgk.levtl 30
                    +++vGG  aG  aA+  ++  +++ le+  
      KIR63524.1  5 LIVVGGDAAGMAAASQARRRRDRSdLEIVA 34
                    678999999988888877777555566554 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0039
                     EEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---SS CS
  Trp_halogenase   3 vivGGGtaGwlaAaalakalkgklevtlveseeigtvgv 41 
                     v+vGGG  G   A al + +   l+vtlve+++ ++  v
      KIR63524.1 159 VVVGGGYIGVEMAEALIQRG---LSVTLVEQADQPMATV 194
                     9*********9999999888...9*******99998776 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.41
                     HCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEE CS
  Trp_halogenase 166 arGvtrvegkvvevqldedgrveslrledgreveadlf 203
                       G++++ g  v+   + dgrv+++ ++dg  + ad +
      KIR63524.1 208 GIGIDIRTGVEVTGLDERDGRVSAVVTADGP-LPADVV 244
                     448999999888877777**********997.666665 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.6       9.1   7.4e+03       5      17 ..       6      18 ..       5      20 .. 0.87
   2 ?   10.9   0.5   0.00023      0.19       5      37 ..     159     191 ..     156     199 .. 0.91
   3 ?    0.2   0.0      0.42   3.4e+02     110     143 ..     201     234 ..     189     238 .. 0.81

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 9.1
                   EEE--SHHHHHHH CS
  FAD_binding_3  5 lIVGaGpaGlmla 17
                   ++VG+  aG+ +a
     KIR63524.1  6 IVVGGDAAGMAAA 18
                   699*******998 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00023
                    EEE--SHHHHHHHHHHHHTTHHEEEEESSSSSC CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlvekrsttv 37 
                    ++VG+G  G+  a  L ++G +v+lve+ ++ +
     KIR63524.1 159 VVVGGGYIGVEMAEALIQRGLSVTLVEQADQPM 191
                    79*************************988765 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.42
                    HHHHHHHHHTEEETCSEEEECCEECCCCCCCEEE CS
  FAD_binding_3 110 iLvehaeerglqvrfktevesleqdeegvtaevr 143
                    +++++ +  g+++r + ev++l + +  v+a+v+
     KIR63524.1 201 LVADAMRGIGIDIRTGVEVTGLDERDGRVSAVVT 234
                    4556666678*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 2888.24
//
Query:       KIR63525.1  [L=96]
Description: hypothetical protein TK50_20390 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 623.66
//
Query:       KIR63526.1  [L=471]
Description: cellulose-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-26   90.2   6.2    8.3e-26   90.2   6.2    2.1  2  CBM_2           Cellulose binding domain
    1.4e-25   90.6   0.0      6e-24   85.3   0.0    2.1  1  Glyco_hydro_18  Glycosyl hydrolases family 18
     0.0003   21.0   1.7     0.0051   17.1   0.1    2.9  2  DUF11           Domain of unknown function DUF11
  ------ inclusion threshold ------
       0.02   15.2   0.0      0.038   14.3   0.0    1.4  1  CBM49           Carbohydrate binding domain CBM49


Domain annotation for each model (and alignments):
>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   6.2   1.9e-29   8.3e-26       1     101 []      33     130 ..      33     130 .. 0.98
   2 ?   -0.4   0.0      0.31   1.4e+03      31      43 ..     446     458 ..     440     468 .. 0.80

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 1.9e-29
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTE CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGa 99 
                 a+at+++t +W+tG++++ t++N g s+++gW v+++lpag+++ + W+a +++sG+++t+tn swNgt+apG+s+sfGf ++++gs   p++++++Ga
  KIR63526.1  33 ATATFVKTADWGTGWEGKYTITNGGASTLSGWAVTFDLPAGTTLGSYWDALLTSSGQRHTFTNRSWNGTLAPGASTSFGFLATGSGS---PANCQLDGA 128
                 5899**********************************************************************************8...999****** PP

                 E- CS
       CBM_2 100 aC 101
                  C
  KIR63526.1 129 PC 130
                 99 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.31
                 S-EEEEE--TTEE CS
       CBM_2  31 gWtvewtlpagqr 43 
                 +W+++w++++g+ 
  KIR63526.1 446 TWSINWDVSNGNG 458
                 7*****9998875 PP

>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.0   1.3e-27     6e-24       4     232 ..     181     406 ..     179     452 .. 0.69

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 1.3e-27
                     EEEEGGGGGSS.GC...SH..TTTESEEEEEEEEEEE...........TTTEEEESSTTHH....HHHH..HHHHHH.HHTSTT-EEEEEEEETT CS
                     xxxxxxxxxxx.xx...xx..xxxxxxxxxxxxxxxx...........xxxxxxxxxxxxx....xxxx..xxxxxx.xxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18   4 gYysswesygn.ny...lp..saklthiiyaFakidg...........engkvvvsdwedl....gnfe..qlkklk.kkknpgvkvllsiGGwt 74 
                     gY+++    +n ++   l+  +a+++ + +aFa+ +                        l    g ++  ++++++ +++++g kv+ls+GG+t
      KIR63526.1 181 GYWHNF---DNpAVelrLRdvPAEYDLVAVAFAEATAtpgavtfavdpG-----------LsaalGGYSdaEFTADVqALRSRGRKVILSVGGET 261
                     666644...443434343368************9988665544443330...........1334444434489999999**************** PP

                     TTTHHHHHHTSHHHHHHHHHHHHHHHHHCT-SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSHHH...HHHHCHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxx RF
  Glyco_hydro_18  75 dssgfslaastdasrkkfadsvvsllrkygfDGiDidweypggnpedkenytallkelrealdkakategkkllLsaavpasasd...lskgydl 166
                     +    + a++++as+++fads ++llr+ygfDG+Did+e  g    + + +++ l++lr+       ++g+ l++ +a+++   +     +++  
      KIR63526.1 262 G----RVAVNDAASATAFADSTYALLRRYGFDGVDIDLE-NGL---NPTYMGQALRALRA-------KAGPSLIIAMAPQTIDMQspaAGYFKLA 341
                     *....6777788***************************.433...25577777777777.......4599**********99996543334888 PP

                     HHHHHHTSEEEEETTTSSSTTSS.BE--SS-SSBTCSSHHHHHH.HHH..HTT--GGGEEEEEESEEEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx.xxx..xxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 167 pkiakylDyvnvmtYDfhgswdn.vtghhaplydaslnvdeavk.eyl..kagvpakklvlGvpfygraw 232
                      +i + l +vn ++Y+          + +a+    + +v++ v  + +  +ag+ ++++ lG+p+   a+
      KIR63526.1 342 LDIRDILTVVNTQFYNSGA---MlGCDQNAAY--PQGSVNFIVAlACIqlEAGLRPDQVGLGLPAGPGAA 406
                     8999999********6665...2233333333..456666666434442266999*********984443 PP

>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   1.1e-06    0.0051      18      84 ..      51     122 ..      38     127 .. 0.80
   2 ?    1.7   0.1     0.072   3.2e+02      28      72 ..     188     231 ..     185     254 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.1e-06
       DUF11  18 ytltvtNtgpasangvvvtDtlPaglayvsvsas...qgtasaltsv....gsLeagesatlsftvrvtrtaas 84 
                 y  t tN g+++++g  vt  lPag+++ s   +   ++  + +++     g+L++g+s+ + f ++ + ++a+
  KIR63526.1  51 Y--TITNGGASTLSGWAVTFDLPAGTTLGSYWDAlltSSGQRHTFTNrswnGTLAPGASTSFGFLATGSGSPAN 122
                 5..558*************99*********999988733333344446778***********999999998886 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.072
       DUF11  28 asangvvvtDtlPaglayvsvsasqgtasaltsvgsLeagesatl 72 
                 ++a +++++D +Pa   +v v  +++ta+    +  + +g sa l
  KIR63526.1 188 NPAVELRLRD-VPAEYDLVAVAFAEATATPGAVTFAVDPGLSAAL 231
                 6789999***.7877777777777666655555545555555443 PP

>> CBM49  Carbohydrate binding domain CBM49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   8.6e-06     0.038      23      79 ..      51     113 ..      44     115 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.6e-06
       CBM49  23 vtitNnssktiksltlkienla....pgeiWgvek...vskntyslpswlsslsaGeslsFgYi 79 
                  titN + +t++   ++ + l     +g+ W+       ++ t++  sw+ +l +G+s sFg+ 
  KIR63526.1  51 YTITNGGASTLSGWAVTFD-LPagttLGSYWDALLtssGQRHTFTNRSWNGTLAPGASTSFGFL 113
                 6899999999998777766.3334558999996553134566777789**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3393.96
//
Query:       KIR63527.1  [L=301]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-22   80.6   0.1    2.7e-22   79.9   0.1    1.3  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
     0.0014   19.2   0.0     0.0034   17.9   0.0    1.7  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
       0.04   13.9   0.0      0.076   13.0   0.0    1.4  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 
      0.088   13.5   0.2       0.69   10.6   0.0    2.2  2  CoA_binding     CoA binding domain


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.1   5.9e-26   2.7e-22       1     117 [.       2     116 ..       2     119 .. 0.93

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 5.9e-26
                   EEEEEETTSHH.HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS- CS
  GFO_IDH_MocA   1 lrvaiiGaGki.gskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPla 96 
                   lr++++G+G   ++ h+ +   +++++e+++++ +++ ra ++a++ gv+a++++++ll+  ++dav va p++ ++++a +a+ ag h+ll+KPla
    KIR63527.1   2 LRFGLFGTGHWaAETHA-AGIGAHPRAELAGVWGRNPDRAAELAARHGVPAFTEVDALLD--ACDAVAVALPPDVQADVAVRAATAGRHLLLDKPLA 95 
                   689******99566666.666666************************************..*********************************** PP

                   SSHHHHHHHHHHHHHHTS-EE CS
  GFO_IDH_MocA  97 ttveeakelvelaekkgklvs 117
                   +tv++a+++v++a+++g+   
    KIR63527.1  96 LTVADADRVVAAAAQSGVASV 116
                   ***************998754 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   7.5e-07    0.0034       2      81 ..       4      81 ..       3      92 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 7.5e-07
                   EEEETTSHHHH.HHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHC CS
  F420_oxidored  2 igiiGaGnmge.alasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlsel 81
                   +g+ G+G+ ++ + a g+ a+     e+  +  rnp++a+ela++ gv +++ +   +++ +d v +a++p + ++v+  +
     KIR63527.1  4 FGLFGTGHWAAeTHAAGIGAHP--RAELAGVWGRNPDRAAELAARHGVPAFT-EVDALLDACDAVAVALPPDVQADVAVRA 81
                   5777888765414455555544..555555558*******************.8999999*************99998666 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.7e-05     0.076      23      69 ..     153     196 ..     142     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.7e-05
                     EEECHHHHCCGGSHHCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE CS
  GFO_IDH_MocA_C  23 ragaeakkrwkrrkkksgGvlgdlgiHdiDllqwLfGqppsvvaalg 69 
                      +g ++  +++r   ++ G+l+d+g H + +    +G++ +v a+ g
      KIR63527.1 153 QPGSPYGGSQWR---RDRGALWDIGPHALSIILPVLGPVTRVAAMDG 196
                     445555555554...478************************99876 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00015      0.69      33      88 ..      32      87 ..       6      90 .. 0.82
   2 ?    0.2   0.1      0.28   1.2e+03      75      95 ..     101     121 ..      95     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
                 EEEC-TTTTTCEET..TEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-S CS
  CoA_binding 33 vfgvnprkvgtevl..glpvyksvdeleektevdvavitvPaesaqeavdelveagik 88
                 v g np+ +++     g+p++++vd l +   +d+  +++P++  ++++++++ ag  
   KIR63527.1 32 VWGRNPDRAAELAArhGVPAFTEVDALLDA--CDAVAVALPPDVQADVAVRAATAGRH 87
                 5555666555333244**************..********************999865 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.28
                  HHHHHHHHHHTT-SEEEEESS CS
  CoA_binding  75 aqeavdelveagikgiviite 95 
                  a  +v ++++ g+  +v +t+
   KIR63527.1 101 ADRVVAAAAQSGVASVVFFTS 121
                  778999999********9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2157.13
//
Query:       KIR63528.1  [L=66]
Description: hypothetical protein TK50_20445 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-10   39.4   0.1    7.3e-10   39.3   0.1    1.0  1  ParE_toxin  ParE toxin of type II toxin-antitoxin system, par
  ------ inclusion threshold ------
      0.053   13.7   0.0      0.057   13.6   0.0    1.1  1  Gp49        Phage derived protein Gp49-like (DUF891)


Domain annotation for each model (and alignments):
>> ParE_toxin  ParE toxin of type II toxin-antitoxin system, parDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.1   8.2e-14   7.3e-10      30      90 .]       3      63 ..       1      63 [. 0.90

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 8.2e-14
                HHHHHHHHHHHHHTTTSEECTSTCCTTEEEEEECTEEEEEEEETSTTEEEEEEEEEHHHHC CS
  ParE_toxin 30 daleealellaenpalgrprrelglkglrririgdyriiYriddeelvvvilrvlhrsedy 90
                ++l +a++ la +p++       g +gl+rir g yri+Y+++d+el+v++++++hrs+ y
  KIR63528.1  3 ARLLAAIAGLAIQPRPAGVKALTGHPGLLRIRSGSYRIVYTVRDDELIVLVVHLGHRSDVY 63
                689999********999995555578*******************************9876 PP

>> Gp49  Phage derived protein Gp49-like (DUF891)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.4e-06     0.057      38      69 ..      28      55 ..       1      59 [. 0.65

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.4e-06
        Gp49 38 dglwElrpksaggiiRvlyafdpgrkvilLha 69
                 gl  +r     g++R++y+++ ++ ++l+++
  KIR63528.1 28 PGLLRIRS----GSYRIVYTVRDDELIVLVVH 55
                45666666....89***********9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       189  (0.0105416); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 452.01
//
Query:       KIR63529.1  [L=228]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-11   43.3   0.0    4.8e-11   42.7   0.0    1.3  1  TetR_C_1  Tetracyclin repressor-like, C-terminal domain
    8.2e-07   28.7   0.5    1.7e-06   27.7   0.0    1.8  2  TetR_N    Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> TetR_C_1  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   5.3e-15   4.8e-11       7     143 ..      88     223 ..      80     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 5.3e-15
                 -HHHHHHHHHHHHHHHHHTSTTHHHHHHT-SS--HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHH..HHHHSTT--STT-HHHHHHH- CS
    TetR_C_1   7 dWrerlrelarslrrallrhrdlarlfagtprlspnelrgmErlLrllrdaGlsdedavyalslisnFvvGavlee..qsgledaeeraeqeavleeal 103
                  Wre++ +l  +  r+l  h+ lar ++  ++++p +lr+++ +L ll ++G + ++a+  ++l+++  +++++e+  + g +da   ++q+  + + +
  KIR63529.1  88 CWREDVIGLLDAYTRILMGHPGLARSALVLRPSGPHYLRLVDAVLGLLHAGGIPVRQAAWGVDLLLQHATATAAEQgtRDGSADADGEVRQQVSAVRDA 186
                 6************************************************************************99844567899999999999999999 PP

                 -TTT-HHHHHHHH...HHT---HHHHHHHHHHHHHHHHHH CS
    TetR_C_1 104 epgeypllaealelaeiltsedsdaaFefGLellldGlea 143
                 +pg+ p+l +a     ++++++  a+ +f  + lldGl a
  KIR63529.1 187 DPGDHPHLHRARD-ELFSGTGEQRARWAF--STLLDGLAA 223
                 ************7.666666666666555..688888875 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.9e-10   1.7e-06       2      36 ..      25      59 ..      24      69 .. 0.95
   2 ?   -2.5   0.1      0.52   4.7e+03       2      16 ..     153     167 ..     152     171 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.9e-10
                HHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHH CS
      TetR_N  2 ldaArelfaerGydattvreIAkrAGvskgalYry 36
                +++A++++ e+G +++t+r++A+++ +++++lY y
  KIR63529.1 25 MSVALRVMREEGLERVTMRRLAAELDTGPASLYVY 59
                689******************************98 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHHTTT CS
      TetR_N   2 ldaArelfaerGyda 16 
                 l  A +  ae+G + 
  KIR63529.1 153 LQHATATAAEQGTRD 167
                 677888889999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1813.34
//
Query:       KIR63530.1  [L=515]
Description: pectate lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-10   39.4  12.0    1.6e-09   37.8   8.0    2.6  2  Beta_helix       Right handed beta helix region
    1.9e-09   37.9   4.3    1.9e-09   37.9   4.3    2.5  3  CBM_6            Carbohydrate binding module (family 6)
    2.6e-09   37.4   3.7    5.6e-09   36.3   3.7    1.6  1  CBM_35           Carbohydrate binding module (family 35)
    1.7e-05   24.9   1.6     0.0003   20.9   1.6    2.4  2  DUF5010_C        DUF5010 C-terminal domain
    5.6e-05   22.2   0.0    0.00014   20.9   0.0    1.6  2  Chondroitinas_B  Chondroitinase B
    0.00059   19.3   6.1    0.00059   19.3   6.1    2.7  2  DUF1565          Protein of unknown function (DUF1565)
     0.0011   19.4   1.0       0.13   12.7   0.2    3.0  3  CBM60            Ca-dependent carbohydrate-binding module xyl
  ------ inclusion threshold ------
       0.08   13.7   5.4       0.38   11.5   1.4    2.8  2  DUF4397          Domain of unknown function (DUF4397)


Domain annotation for each model (and alignments):
>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1         2   4.6e+03      36     137 ..      88      96 ..      69     123 .. 0.48
   2 !   37.8   8.0   7.4e-13   1.6e-09       2     153 ..     249     446 ..     248     471 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2
                 EES-EEES-SS-SEEE-TT-S-EEES-EEE---SEEE-TT--S--EEES-EEES-SS-SEE-TT-S--EEES-EEESTT--SEE---TT---EEES-EE CS
  Beta_helix  36 ienneiannsgsGiyilgssnntisnntisdnngggialfgasnnlienneitdnggsGiylnyssnntienNiidnnagsGividdsssnvtvtnNti 134
                 + +++++n                                                                                           
  KIR63530.1  88 VNGSTVQN------------------------------------------------------------------------------------------- 95 
                 22222222........................................................................................... PP

                 ES- CS
  Beta_helix 135 tnn 137
                    
  KIR63530.1  96 --L 96 
                 ..2 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 7.4e-13
                 SEEE-SS-E.EEESEEEES-SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT.-S-EEES-EEE---..........SEEE-TT--S--EEES-EEES CS
  Beta_helix   2 gisingssnvtiknntisnsggyGiylrgssnvvienneiannsgsGiyilgs.snntisnntisdnn..........gggialfgasnnlienneitd 89 
                 +i+i+g+ +  + + +i + g y++++ + +n+++++ ++ +n++sGi i+g+ snn++ n   ++n           g +i+   + +n++++ + ++
  KIR63530.1 249 AIHIEGDWW-RLVGLEIVH-GPYAVFALDVNNTIFDRLVTRDNYESGIQIQGAsSNNQVVNLDSYGNRdprkngesadGLAIKEGSGTGNVVRGARLWN 345
                 689999999.*********.9***************999999***********9**********************888888888999*********** PP

                 -SS-SEE-TT.......................................-S--EEES-EEESTT--SEE---TT.---EEES-EEES-SSEEEE-TT-S CS
  Beta_helix  90 nggsGiylny.......................................ssnntienNiidnnagsGividdss.snvtvtnNtitnnkgaGiavvgss 148
                 n+++G+ +                                         + n t++n+ + +na  G +id+++  + t+ ++t+ +n   G+++ +s 
  KIR63530.1 346 NSDDGLDFWMfespillenslawgngfnrwnlpdytgdgngfklggngvAANHTVRNSMAWGNA-VGGFIDNNNpGRHTIDHCTAWDNPETGFKFDRST 443
                 *888666665555666666666666666666666666666666666788888999999998888.9999999999999999999999999999888888 PP

                 S--EE CS
  Beta_helix 149 snvtv 153
                 s  t+
  KIR63530.1 444 S--TL 446
                 8..33 PP

>> CBM_6  Carbohydrate binding module (family 6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   4.3   8.3e-13   1.9e-09      19     123 ..      41     141 ..      22     143 .. 0.86
   2 ?   -3.1   0.0       4.2   9.4e+03      10     119 ..     293     309 ..     286     312 .. 0.52
   3 ?   -1.3   0.3       1.1   2.5e+03      59      86 ..     447     472 ..     426     488 .. 0.57

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 8.3e-13
                 TTTSEEEE---TT-EEEEEEEEESSTEEEEEEEEEEESSSE.EEEEEEESSTTSSEEEEEEE---SSTTEEEEEEEEEEE-SEEEEEEEEEECSST--- CS
       CBM_6  19 agggkavgyinnGdwlaYkdvdfgsggaysvearvasgaag.gsielrldsatgtlvgtvsvpstggwqtyvtvsanvtlptGvhdlylvftggaeylf 116
                 +g+g + + ++ G++ +++ v  +++ga +v+ r a+ga++  s +l +++     v +++++ tg w+t+vt + +v+l++G+++++l+ t +   l 
  KIR63530.1  41 SGSGFCNATNAVGAYAQFT-VTAAAAGAATVQIRFANGATTvRSADLVVNG---STVQNLAFEGTGAWSTWVTRTVSVNLTAGSNTVRLTPTVSV-GLP 134
                 446777777888*******.*********************9*******99...9999********************************99965.677 PP

                 EEEEEEE CS
       CBM_6 117 nldwfkf 123
                 n+d++ +
  KIR63530.1 135 NVDYLDV 141
                 7777655 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.2
                 S-EEEE--STTTSEEEE---TT-EEEEEEEEESSTEEEEEEEEEEESSSEEEEEEEESSTTSSEEEEEEE---SSTTEEEEEEEEEEE-SEEEEEEEEE CS
       CBM_6  10 gvslekataagggkavgyinnGdwlaYkdvdfgsggaysvearvasgaaggsielrldsatgtlvgtvsvpstggwqtyvtvsanvtlptGvhdlylvf 108
                 g+++++a+                                                                                           
  KIR63530.1 293 GIQIQGAS------------------------------------------------------------------------------------------- 300
                 44444444........................................................................................... PP

                 ECSST..---EEE CS
       CBM_6 109 tggae..ylfnld 119
                     +  +++nld
  KIR63530.1 301 ----SnnQVVNLD 309
                 ....333555555 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.1
                 EEEEEEEESSTTSSEEEEEEE---SSTT CS
       CBM_6  59 ggsielrldsatgtlvgtvsvpstggwq 86 
                 + ++ +  +    + +g++s+ s+++w+
  KIR63530.1 447 TKNLAVANGT--AASLGSTSTGSGNSWN 472
                 3344444333..5555555555555555 PP

>> CBM_35  Carbohydrate binding module (family 35)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   3.7   2.5e-12   5.6e-09       2     120 ..      19     143 ..      18     144 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 2.5e-12
      CBM_35   2 vyeaeka.tltglkvdkaakavsgtGyvgefegagdavslnVnvekaGeynlnvtfs.apygsKentlvvnGtavatvafaesdevkq..ttvitvkLk 96 
                 +yeae    + + +vd +  ++sg G+ +  +  g    + V++++aG  +++++f+ +  + +   lvvnG+ v++ af+ +   +   t ++ v+L+
  KIR63530.1  19 RYEAETSpAVCTGTVDADWAGYSGSGFCNATNAVGAYAQFTVTAAAAGAATVQIRFAnGATTVRSADLVVNGSTVQNLAFEGTGAWSTwvTRTVSVNLT 117
                 6888765234445799****************************************7256778999***************9987765115667789** PP

      CBM_35  97 AGantikidr..dWGymnvdsievkl 120
                 AG+nt+ ++   + G  nvd+++v +
  KIR63530.1 118 AGSNTVRLTPtvSVGLPNVDYLDVDA 143
                 ******9987779*********9976 PP

>> DUF5010_C  DUF5010 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   1.6   1.3e-07    0.0003       3     110 ..      31     139 ..      29     141 .. 0.79
   2 ?    1.1   0.0      0.18   4.1e+02      56     103 ..     223     267 ..     214     271 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.3e-07
   DUF5010_C   3 gnldikktdDvnggwnvtsteaGewlewkeipfkaGavtlkvryatt.keaakvrfvidgtagpsvelpaTgglqewetvdagtlkieakgyhtvkl.. 98 
                 g +d+  +   ++g++    + G   ++     +aGa t+++r+a   ++ ++  +v++g + +++    Tg + +w+t  +  +++ a++ +tv+l  
  KIR63530.1  31 GTVDADWAGYSGSGFCNATNAVGAYAQFTVTAAAAGAATVQIRFANGaTTVRSADLVVNGSTVQNLAFEGTGAWSTWVTRTVS-VNLTAGS-NTVRLtp 127
                 6667777777899999999999**********************9841444566799*********************98875.4555555.5666622 PP

   DUF5010_C  99 eiveGnidlnyl 110
                 ++  G ++++yl
  KIR63530.1 128 TVSVGLPNVDYL 139
                 577888888887 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.18
   DUF5010_C  56 rfvidgtagpsvelpaTgglqewetvdagtlkieakgyhtvkleiveG 103
                 r+vidg + p+ + p  g+      ++ g ++ie + ++ v leiv+G
  KIR63530.1 223 RVVIDGENMPHTPAPVGGS---IPRAERGAIHIEGDWWRLVGLEIVHG 267
                 8899999999999998888...789999*****************999 PP

>> Chondroitinas_B  Chondroitinase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   6.4e-08   0.00014       6      59 ..     175     229 ..     171     232 .. 0.92
   2 ?   -3.3   0.0       1.4   3.2e+03     166     183 ..     311     328 ..     294     336 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6.4e-08
                      HHHHHHHH--TT-EEEE-SEEEE.T-EEEE-S--BTTB-EEEEESSTTSEEEEES CS
  Chondroitinas_B   6 eleeavkeakpGdeivlknGvyk.dvqlkfkgeGteekPivlkaetaGkvfieGe 59 
                       ++ av+ a+pG +i l+ G+y    +l++ ++Gt+ +Pi+++   + +v+i+Ge
       KIR63530.1 175 SIQRAVDLAQPGHTIYLRGGTYApSTNLQLLKNGTSSQPITMRNYGTERVVIDGE 229
                      6799******************83579***************************8 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.4
                      EE.EE---SSS---SEEE CS
  Chondroitinas_B 166 fFGsrPrkgGpagetiql 183
                      +    Prk G++++++ +
       KIR63530.1 311 YGNRDPRKNGESADGLAI 328
                      333459999999999877 PP

>> DUF1565  Protein of unknown function (DUF1565)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.3      0.98   2.2e+03      88     130 ..      74     115 ..      48     124 .. 0.65
   2 !   19.3   6.1   2.6e-07   0.00059       1      42 [.     159     200 ..     159     473 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.98
     DUF1565  88 gvqnvtivlaneatiaGvtitNpnilkgtgvliesasakianN 130
                   + +t v      + G t++N    +gtg + + ++ +++ N
  KIR63530.1  74 FANGATTVRSADLVVNGSTVQNL-AFEGTGAWSTWVTRTVSVN 115
                 34556777777778888888887.5577777666555555555 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 2.6e-07
     DUF1565   1 vaGndantGsksaPfktiTkAlllakageviqlapGtYseat 42 
                 ++G+d n+G+  aP+++i +A+ la++g++i l  GtY  +t
  KIR63530.1 159 TNGDDGNPGTLAAPLRSIQRAVDLAQPGHTIYLRGGTYAPST 200
                 58************************************8776 PP

>> CBM60  Ca-dependent carbohydrate-binding module xylan-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.2   5.6e-05      0.13      37      79 ..      55      94 ..      22      99 .. 0.76
   2 !    7.1   0.1    0.0034       7.5      19      55 ..      85     125 ..      82     129 .. 0.89
   3 ?   -1.9   0.0       2.1   4.6e+03       4      36 ..     189     220 ..     188     236 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.6e-05
       CBM60 37 aktytftadltag.ahklqirylNDlyvgagqDRnLevdsitvn 79
                ++  +ft++++a  a ++qir++N ++    +  +L+v+  tv+
  KIR63530.1 55 YA--QFTVTAAAAgAATVQIRFANGATTV--RSADLVVNGSTVQ 94
                34..5666666555***********9998..6778999988887 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0034
       CBM60  19 rllvdGqkvg....eadvasteaktytftadltagahklqi 55 
                  l+v+G++v+    e++ a +++ t t++++ltag ++++ 
  KIR63530.1  85 DLVVNGSTVQnlafEGTGAWSTWVTRTVSVNLTAGSNTVRL 125
                 689*******99998888899*****************987 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.1
       CBM60   4 VrAagdqagdeppefrllvdGqkvgeadvaste 36 
                 ++ +g ++     +++ll +G+  + +++++  
  KIR63530.1 189 IYLRGGTYAP-STNLQLLKNGTSSQPITMRNYG 220
                 5666666633.3677777777777766554433 PP

>> DUF4397  Domain of unknown function (DUF4397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.4   0.00017      0.38       2      54 ..      71     132 ..      70     183 .. 0.67
   2 ?    2.9   0.1     0.081   1.8e+02      40      78 ..     418     460 ..     395     473 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
     DUF4397   2 tvrvvhaspdapsvDvyvngkkvlknvaygdvt.........gylqvpaGqytielnpagn.k 54 
                 ++r++++++ + s D+ vng++v +n+a++ +            ++++aG++t++l+p+ + +
  KIR63530.1  71 QIRFANGATTVRSADLVVNGSTV-QNLAFEGTGawstwvtrtVSVNLTAGSNTVRLTPTVSvG 132
                 79*****************9998.888877777455555555666667777777775555533 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.081
     DUF4397  40 paGqytiel.....npagn.kikagttvallnvditleagteytv 78 
                 ++G +ti+      np +  k++++t++  l++++ +++gt+ ++
  KIR63530.1 418 NPGRHTIDHctawdNPETGfKFDRSTST--LTKNLAVANGTAASL 460
                 6899999999888877777675555666..8888******99884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3794.30
//
Query:       KIR63531.1  [L=314]
Description: serine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-10   39.5   0.8    4.9e-10   39.5   0.8    2.2  2  GHMP_kinases_N  GHMP kinases N terminal domain
    7.6e-06   26.2   0.2    5.2e-05   23.5   0.1    2.3  2  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.8   5.5e-14   4.9e-10       2      66 .]      87     150 ..      86     150 .. 0.85
   2 ?   -3.8   1.0       1.8   1.6e+04      26      27 ..     251     252 ..     236     262 .. 0.54

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 5.5e-14
                     EEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEH.HHHHHHHHHHH.HHHHHHHHHSHHHHHHHHSS CS
  GHMP_kinases_N   2 ivikseiPvgaGLGSSAAlavalvaAllallgls.leeaklaleae.rlaqggngsggDvaasvyGg 66 
                     +++ ++iP ++GLGSS+A++va+v  + al  ++     +l   +  rla+  +g++++va++++Gg
      KIR63531.1  87 VECVNRIPQARGLGSSSAAIVAGVQLARALV-VDgA--TRLDDAGAlRLAAEIEGHPDNVAPCLLGG 150
                     6899**********************99998.4433..67766666688888889***********8 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.8
                     HH CS
  GHMP_kinases_N  26 aA 27 
                     aA
      KIR63531.1 251 AA 252
                     22 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       0.2   1.8e+03      59      82 ..     149     171 ..     148     173 .. 0.85
   2 !   23.5   0.1   5.8e-09   5.2e-05      21      69 ..     232     272 ..     202     276 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.2
  GHMP_kinases_C  59 Gptvfalfkdkdeaeqvaralree 82 
                     G++ +a++ ++ +a +v +a++ee
      KIR63531.1 149 GGFTIAWT-EPTGARAVSLAVAEE 171
                     88899998.999999999999886 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 5.8e-09
  GHMP_kinases_C  21 qrselkavvgilppeleellealselGalgaklsGaGgGptvfalfkdk 69 
                     q      +++  +p   +l+eal+++G  +a++sGa  Gptv al++  
      KIR63531.1 232 Q---D--YRAAGMPDSSALVEALRAAG-VAAVISGA--GPTVLALTEPS 272
                     3...4..8888899999**********.********..*******9554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2351.38
//
Query:       KIR63532.1  [L=316]
Description: hypothetical protein TK50_20835 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       925  (0.0515924); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 1860.71
//
Query:       KIR63533.1  [L=128]
Description: hypothetical protein TK50_20870 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-34  117.6   0.7    2.6e-34  117.4   0.7    1.0  1  DUF742    Protein of unknown function (DUF742)
    3.9e-05   23.4   0.5    6.5e-05   22.7   0.5    1.3  1  MarR_2    MarR family
  ------ inclusion threshold ------
      0.024   14.5   0.4      0.039   13.8   0.4    1.4  1  HTH_IclR  IclR helix-turn-helix domain
       0.14   11.8   0.0       0.21   11.2   0.0    1.3  1  HTH_24    Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> DUF742  Protein of unknown function (DUF742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   0.7   5.9e-38   2.6e-34       3     114 .]      17     128 .]      15     128 .] 0.96

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 5.9e-38
      DUF742   3 kgalvRpyaltgGrtrpeedldletlvvaeagap.e.aarlqpehrailrLcreplsVaelaAelklPvgvvrvLlsdLldaglltvrapvtdraaeqp 99 
                 +g++vRpy+ltgGr rp   ldl+++v a +ga+   ++rl pehr++++L r+p  VaelaAel+l vgvvrvL++dLl+ gl++v++p+ +  a  p
  KIR63533.1  17 AGPVVRPYTLTGGRVRPPVGLDLVAFVLAGRGADpAaHPRLHPEHRRLVELARRPVPVAELAAELDLAVGVVRVLVGDLLARGLVSVHEPAGT--AFLP 113
                 6899**************************998764589*****************************************************9..89** PP

      DUF742 100 drelLeevlsGLrrl 114
                 d ++L++v++GLr+l
  KIR63533.1 114 DDNILKAVVNGLRAL 128
                 *************86 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.5   1.5e-08   6.5e-05       7      52 ..      60     102 ..      58     110 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.5e-08
                 HHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2   7 qarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52 
                 ++r L +L+rrp   + v+ela++l+l  + v  ++ +L a+GLv 
  KIR63533.1  60 EHRRLVELARRP---VPVAELAAELDLAVGVVRVLVGDLLARGLVS 102
                 678899******...******************************6 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.4   8.7e-06     0.039      14      49 ..      67     102 ..      61     105 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.7e-06
                 TTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  14 eapqeltlselArrtglpkStvhRlLqtLvelGyve 49 
                  a++++ ++elA++++l+   v+ l+  L  +G+v 
  KIR63533.1  67 LARRPVPVAELAAELDLAVGVVRVLVGDLLARGLVS 102
                 5789999***************************96 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.6e-05      0.21      19      47 ..      73     101 ..      65     102 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.6e-05
      HTH_24  19 sqreLAerlglSpstvnrrlkrLeeeGlI 47 
                 + +eLA +l+l ++ v+  +  L   Gl+
  KIR63533.1  73 PVAELAAELDLAVGVVRVLVGDLLARGLV 101
                 679************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 964.25
//
Query:       KIR63534.1  [L=515]
Description: stage II sporulation protein E [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-42  144.7   1.3    6.1e-42  143.7   1.3    1.5  1  SpoIIE    Stage II sporulation protein E (SpoIIE)
     0.0016   19.0   0.0     0.0036   17.9   0.0    1.6  1  GAF       GAF domain
  ------ inclusion threshold ------
      0.023   15.0   1.3      0.023   15.0   1.3    2.9  3  GAF_2     GAF domain


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.7   1.3     1e-45   6.1e-42       4     191 ..     318     511 ..     315     513 .. 0.94

  Alignments for each domain:
  == domain 1  score: 143.7 bits;  conditional E-value: 1e-45
                 EEEEEEEECSSSSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHCHCTTSTT....TTCEEEEEEEETTTT...EEEEEEESSSSEEEEETTSTEE CS
      SpoIIE   4 rlalvvgDvvGhGleAalimgllrsalrelataglepaevlkrlnralardleee...erfaTavlavydpstg...kleyanaGhpppllvrpdggtk 96 
                 + ++++gDv+G+G++Aa+++g++r+ l++l   + +p e+++ lnral  d +++   ++f+T++l+ + p +     +++a +Ghp pl+vr+ +g++
  KIR63534.1 318 GALFALGDVCGKGVGAAVLTGRVRQSLQTLRLVEQRPLELMRLLNRAL-FDAPDAarrNQFTTVLLGTLTPRSDgglLVRVAGGGHPSPLVVRA-DGAV 414
                 56799*******************************************.666666799**********998775334689**************.9999 PP

                 EEE--SS--TTTSSST-EEEEEEE--TTEEEEEESCCCCSSS..HHHHHHCCCHHCHHHHCT.....HCCHHHHHHHHHHHHTTSSSSS-EEEEEEE CS
      SpoIIE  97 lllastglplGilpeadyetaelelepgdtlllyTDGvtEar..dsdgelfgkerllallasaegesleelldalveellelgsgeleDDitllvlr 191
                 ++   +g+p+G+l+   + ++e+ l+pg++ll yTDGvtEar  + +  +fg+erl +++as +g ++++l+d++++ + e  +g+ +DDi++l++r
  KIR63534.1 415 EQVRVGGMPIGALAAPRFAETEVGLAPGEVLLAYTDGVTEARggAGEVDMFGDERLRRAVASGAGLPPAALVDRVLQLVDEWLDGQAHDDIAMLAVR 511
                 99999**************************************999***************9*******************999************9 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     6e-07    0.0036       3     133 .]     118     259 ..     109     259 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6e-07
                 HHHHHHHHHHHHHHHTESEEEEEE..EEETTEEECEEEEECCEEEET.TSHHHHHHHHHSSSEEESTGG..TSTTHHTT........HHHHHHHHTTES CS
         GAF   3 eelldtvveelrellgadrvalyl..pdydGlhydipqasrwlfmkn.grgicgqvlatgqplvipdst..pdprfaqy........nrrdllenmgir 88 
                 e++l+ ++    ++l+    ++++  p       + ++a++wl+  + +rg  + v   g pl +p+++    +++a++        +++  + + g+ 
  KIR63534.1 118 EQTLRAAATLPVPYLADAALVVHRppP-------PAEDAPHWLRYAEgDRGPTAGVTPAGLPLAVPGLAeaLAGDHAEPspwldaelADLGAVLPAGFG 209
                 555666666666666655555555331.......244566776666643333335666699*****955465555555556666688445555555555 PP

                 ...EEEEEEEEETTEEEEEEEEEE..SSSCSHHHHHHHHHHHHHHHHHHH CS
         GAF  89 ...sslvvPlvndgelwGllvlhn..psppftreelellqvladqvaval 133
                    ++lv P++      G+lvl++   +p f+  e+el++++a++++ al
  KIR63534.1 210 rpgTVLVSPMLGAAGAAGALVLIRraGRPGFDAREIELAREFAARAGAAL 259
                 66788******98888********87777******************997 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.25   1.5e+03      38      85 ..      48      95 ..       5     128 .. 0.64
   2 ?   15.0   1.3   3.8e-06     0.023      85     137 ..     206     259 ..     136     260 .. 0.85
   3 ?   -3.1   0.0       1.5     9e+03       5      21 ..     483     502 ..     454     511 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.25
                EEEES-TTSTT-S-B---TTHHHHHHHHTS-EE.ES-GGG-S-HHHHHH CS
       GAF_2 38 awgeaeeefgaaldrplgeglvgealrtgrpvi.lndleedpdkkglpa 85
                a++   ++f+a+++ +  +g v +alr gr  + + d+ e++++  + +
  KIR63534.1 48 AAAAGADTFDAEHHGRRLHG-VRRALRGGRFAWyVRDVTEERARTDALL 95
                44444555555555555566.5688888885554777666555554444 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 3.8e-06
                 HHHHTT--EEEEEE-T.TS---EEEEE.S......--HHHHHHHHHHHHHHHHHH CS
       GAF_2  85 aghaglrsflavPlis.egrvvGvlnl.yankppafdeedlelLeelaeqiaiai 137
                 ag  ++++ l+ P+++  g   G+l+l  ++++p+fd++++el++e+a+ ++ a+
  KIR63534.1 206 AGFGRPGTVLVSPMLGaAG-AAGALVLiRRAGRPGFDAREIELAREFAARAGAAL 259
                 33344555599***99889.9**999988999999******************98 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHH.S.S... CS
       GAF_2   5 eelldlvldelve.l.g.aa 21 
                   l+d+vl+ + e l g a+
  KIR63534.1 483 AALVDRVLQLVDEwLdGqAH 502
                 45677777777666655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3816.91
//
Query:       KIR63535.1  [L=469]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-38  131.2  57.5    1.8e-36  125.8  41.3    2.0  2  MFS_1       Major Facilitator Superfamily
    3.6e-06   26.1  10.6    3.6e-06   26.1  10.6    2.9  3  Sugar_tr    Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8  41.3     2e-40   1.8e-36       8     352 ..      28     405 ..      18     406 .. 0.78
   2 !   19.4   8.2   4.6e-08   0.00041      71     167 ..     337     442 ..     333     460 .. 0.66

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 2e-40
       MFS_1   8 salarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgagalfpa 105
                    a++++ p++   ++ +lg+s   +gl++++ +l++ava++ +++++dr  r+++l++g l++a+g + ++ +a++++++l++ +++++g ga+ ++
  KIR63535.1  28 DNVAIGLVPPLYG-PISGSLGVSQRLLGLVTAVSFLVSAVAAVGWAYVGDRTDRKPLLMVGTLVWAAG-TGGSaLAQGYPAFLAAQLVAAVGLGAVGSV 124
                 4445555666666.79************************************9999************.666646799********************* PP

       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.........kgtgpap 195
                 g ++++d+ ++++rg+++++++++ ++G++ g l+ggll  ++ Wr +f++l++v+l a      +l++ + +r+ ++p+  +          +  +a 
  KIR63535.1 125 GFSVVTDLISPRRRGLVMSFWGLSQGVGTLAGTLVGGLLG-AADWRRPFWLLTVVGLAATAA---YLFTYDIRRGQSEPELAGalaggaeydYRITRAD 219
                 ****************************************.99****************884...3333333333333322223457777744444444 PP

       MFS_1 196 lvpawkallkdpvlwillialllfffgfsglltllply...lqevlgls.......glllaglllallalvgailallagrlsdrlgrrrrlllallll 284
                 l  ++ a ++++    +l+   l++ + +g l++lp++     +  g+s       g    ++l+ l+++++++++l++ ++ +r++r r+l+ a+++l
  KIR63535.1 220 LP-GILARRTNR----WLVLQGLTAQAAFGSLVWLPVLfaqRAQAQGYSaatavvvG-SVFATLFQLGGVLSIVGGLVGDAVQRRTPRGRALVAAVGIL 312
                 44.588888888....56666666669999*******75667788888899977773.333334777777777777777777799999*********** PP

       MFS_1 285 llaalglallavt....................ssavllll........vlvl..iGfglgfv...fpsllalasdlappeeagtasglfntagslgga 350
                 +++ + l+l+ v+                    s      +        +l++  + +  +++   +p ++al++d+ ppe++gt+++l n+++++g+a
  KIR63535.1 313 AALPFYLVLFFVPlridvpdggstgavvgavlaS------VvteptvglSLLTavFAL--ALTsanSPNWFALIADVNPPEHRGTVYSLGNLVNGVGRA 403
                 ***9999999999*******98865554443330......144555442333322444..333556*******************************99 PP

       MFS_1 351 lg 352
                  g
  KIR63535.1 404 AG 405
                 86 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 4.6e-08
       MFS_1  71 lfalglllllfa..sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsll 163
                 + ++g++l++++  +++ l l+  v++ + ++a  p+  aliad+ p+e+rg +++l ++ +++G + g +l g+  ++l      ++ + +  +v+ l
  KIR63535.1 337 GAVVGAVLASVVtePTVGLSLLTAVFALALTSANSPNWFALIADVNPPEHRGTVYSLGNLVNGVGRAAGNGLVGVAFHALRaafpPPLNYAVGLAVFQL 435
                 55666444444357778855555555555559*************************************999998776665555433334444444444 PP

       MFS_1 164 afv...l 167
                 +fv   +
  KIR63535.1 436 FFVptgV 442
                 4443333 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1  10.6   4.1e-10   3.6e-06      44     190 ..      49     188 ..      14     191 .. 0.87
   2 ?   -0.8   1.8     0.058   5.2e+02     351     403 ..     266     320 ..     224     349 .. 0.46
   3 !    4.9   0.7    0.0011        10     349     433 ..     352     438 ..     333     446 .. 0.63

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 4.1e-10
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHH.HHHHHHHHHTTS-SCCHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGla.svlvPmyisEiApkklRgalvs 141
                 s+ l+gl++++ ++++++ ++   ++gdr +Rk+ l++++++  +g+  +a+a+    + +++++++++ +g+G++ sv  ++ ++ i+p + Rg ++s
  KIR63535.1  49 SQRLLGLVTAVSFLVSAVAAVGWAYVGDRTDRKPLLMVGTLVWAAGTGGSALAQ---GYPAFLAAQLVAAVGLGAVgSVGFSVVTDLISP-RRRGLVMS 143
                 56789*************************************************...99***************8725556666666655.67****** PP

                 HHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGG CS
    Sugar_tr 142 lyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllf 190
                 ++ l+  +G l ++ +g  l    +   wr++++l  v  l+  ++ lf
  KIR63535.1 144 FWGLSQGVGTLAGTLVGGLLG---A-ADWRRPFWLLTVVGLAATAAYLF 188
                 *************99987664...2.46*********999988887776 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.058
                 HHHHHHHHHHHHHHTT.TTHHHHHHHHHHS.HTTTHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 351 vaivfialfialfalg.wgpvpwvlvsElf.pqsvRskalaiavavnwlanflis 403
                  a+v   +f+ lf+lg + +++  lv +      +R+ al  av +     f   
  KIR63535.1 266 TAVVVGSVFATLFQLGgVLSIVGGLVGDAVqRRTPRGRALVAAVGILAALPFYLV 320
                 2333334444444442244444444443320233444444444444444443333 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0011
                 CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH..T-HHHHHHHHHHHHHHHHH CS
    Sugar_tr 349 sivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig..ggyvflvfaglavlfiifv 433
                 ++++  ++a+f+ + +    p  + l++++ p++ R++++++   vn +   + + l  +++ a+    ++  ++ +glav+ ++fv
  KIR63535.1 352 TVGLSLLTAVFALALTSANSPNWFALIADVNPPEHRGTVYSLGNLVNGVGRAAGNGLVGVAFHALRaaFPPPLNYAVGLAVFQLFFV 438
                 555666666776666767778888999999999999999999999998876666666666666665311133344455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 3052.91
//
Query:       KIR63536.1  [L=558]
Description: alpha-amylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-74  249.6   0.0    1.1e-73  248.8   0.0    1.3  1  Alpha-amylase  Alpha amylase, catalytic domain
    7.9e-05   22.9   0.0    0.00035   20.8   0.0    2.2  1  DUF3459        Domain of unknown function (DUF3459)
  ------ inclusion threshold ------
      0.022   12.9   0.0      0.034   12.2   0.0    1.2  1  GHL5           Hypothetical glycoside hydrolase 5


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.8   0.0   1.8e-77   1.1e-73       1     332 [.      41     405 ..      41     409 .. 0.90

  Alignments for each domain:
  == domain 1  score: 248.8 bits;  conditional E-value: 1.8e-77
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHH.STTSGG CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifkspqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslk.kkgepk 95 
                    GDL Gi+ +Ld   eLGv+a+wlsP++ spqad gYd+ady+ +dp fG  +d ++Li++ah++ ++vi+DlV+NHts++h wf+ +l+  +g+p+
     KIR63536.1  41 GDLPGITARLDHFVELGVDAVWLSPFYPSPQADAGYDVADYRDVDPLFGRLADADRLIAEAHARRLRVIVDLVPNHTSSAHRWFTAALAaAPGSPE 136
                    9************************************************************************************9986156888* PP

                    GCCC-E........ESS-STTC-TTTTCSCEE....CTTTTCEEESSS-TTS-BB-TTTCCCCCCCCCCCCCCCTTT-SEEEETTCCCTTTCCCC. CS
  Alpha-amylase  96 rdyyiwkegk..eekeppnnwkslfdgsawey....dekaqeyylhlflkklpdLnteneevrkelkdvvkfwlekgidGfRlDvvkhvskveal. 184
                    r+ y++++g     ++ppn+w s+f+g+aw+     d   +++ylhlf  ++pdLn++n+evr e  dv++fwl++g+dGfR+Dv++ + k+++l 
     KIR63536.1 137 RARYVFRDGLgpDGDQPPNDWTSVFGGPAWTRvtepDGRPGQWYLHLFDPGQPDLNWDNPEVRAEFLDVLRFWLDRGVDGFRVDVAHGLIKQADLa 232
                    *****9*99988899****************9888888889**********************************************999966669 PP

                    ....................HCCHCCHHHHHHHHHHHTC.CGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-H CS
  Alpha-amylase 185 ....................esngeflheftqalnetva.srkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisa 259
                                          + + +he   +  +  +    ++++v+E + +  e+l++y+  +++   + +++   +                
     KIR63536.1 233 nwqepqeilsgsevdkprppMWDQDGVHEVYRDWRRLLDsYDGQRILVAEAWVEPAERLARYVRPDEMHQAFNFEYLTASWTA------------- 315
                    *****************99944555555555555555553347899***********************99444444443333............. PP

                    HHHHHHHHHHHHHS-CCCTTCEEES--TTS--HHHHTTSSTTTT.................HHHHHHHHHCCCTSSSEEEEETTCCCT-- CS
  Alpha-amylase 260 kklkellkkwlkaleeaaeeavtflgnHDqeRilsrlgddsaea.................ekklklaaillltlrGvpviYyGeEigmt 332
                     + +++++++l+a++ +   ++++l nHD  R +srlg    ++                 ++++++a++l+l l+G ++ Y+GeE+g+ 
     KIR63536.1 316 PAQYAVITRSLEATDAVGAPTTWVLSNHDVVRHASRLGLPVGTPrpngigigdpqpdaalgLRRARAATLLMLALPGSAYLYQGEELGLP 405
                    3448899********999********************9887768899***************************************985 PP

>> DUF3459  Domain of unknown function (DUF3459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   5.9e-08   0.00035       1      78 [.     480     545 ..     480     555 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.9e-08
                 HHHHHHHHHHHHCCCTT--CGGEEEEEEECTCEEEEEEEETTEEEEEEEE-SSCGCCS-SS---SEEEEECT--S... CS
     DUF3459   1 lyrdLLaLRreePaLadarrgglevavlgdgallvrwrlgdgrllrllaNLgdepvtlppegaagkllfsseaaragg 78 
                 lyr+ L+LRre+     + rg+l +  l++g+ +v +r   ++++++l N+g+ pv++p   a++++l++s +   +g
  KIR63536.1 480 LYRTALRLRREHG----LGRGSLYW--LASGDEVVSFR---NGDVTVLTNFGAMPVPVP---AGAQVLHASAPLPDDG 545
                 7**********95....66778886..66666667777...47889*************...9999**9999877544 PP

>> GHL5  Hypothetical glycoside hydrolase 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.6e-06     0.034     350     384 ..     190     224 ..     185     249 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.6e-06
        GHL5 350 dlnhqlPvvraillelqrrkintGadGirvdGgqd 384
                 dln  +P vra +l++ r  ++ G+dG rvd +  
  KIR63536.1 190 DLNWDNPEVRAEFLDVLRFWLDRGVDGFRVDVAHG 224
                 9******************************8865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3932.14
//
Query:       KIR63537.1  [L=163]
Description: peripheral-type benzodiazepine receptor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-43  148.4  22.5    1.4e-43  148.2  22.5    1.0  1  TspO_MBR  TspO/MBR family


Domain annotation for each model (and alignments):
>> TspO_MBR  TspO/MBR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.2  22.5   7.8e-48   1.4e-43       4     134 ..      24     160 ..      21     161 .. 0.93

  Alignments for each domain:
  == domain 1  score: 148.2 bits;  conditional E-value: 7.8e-48
                 HHHHHHHHHHHH.HHHCCHHHHHHS---TTS--HHHHTTHHHHHHHHHHHHHHHHHHH......HHHHHHHHHHHHTSGGCTTTTTSGGGHHHHHHHHH CS
    TspO_MBR   4 alpllvgllggl.ftkseeewykslrkPpwaPpdwvfppvWtvlyilmgvaaylvwka......lalyavqlvlnllwsplffglkspvlalvdivall 95 
                 a++ +++++ggl +  ++ e y+sl++P waPp+wvf+pvWt+ly+l+++a +lvw++      l ++++qlvln++w+plffg+ +++la+++iv+++
  KIR63537.1  24 AAVTVAAAIGGLgVRGTS-EEYASLNQPDWAPPSWVFGPVWTFLYALIAIAGWLVWRRvgfgpaLYAWTAQLVLNAIWTPLFFGAGRYGLAFAEIVLMW 121
                 567778888888454433.34*****************************************99779******************************** PP

                 HHHHHHHHHCCCC-HHHHHHHCHHHHHHHHHHHHHHHHH CS
    TspO_MBR  96 glvvalilafskvdklaallllpyllWllfatylnasiw 134
                 +++ ++++ f +v++laa+lllpy++W++fa++ln+siw
  KIR63537.1 122 LAIGVTVVLFARVSRLAAALLLPYWAWVTFAAALNLSIW 160
                 **************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.65
# Mc/sec: 758.07
//
Query:       KIR63538.1  [L=261]
Description: thymidylate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-16   58.2   0.0    1.3e-15   57.5   0.0    1.3  1  Thymidylate_kin  Thymidylate kinase
      7e-06   26.6   0.2     0.0013   19.3   0.2    3.0  1  AAA_18           AAA domain
     0.0028   17.9   0.1     0.0042   17.3   0.1    1.3  1  AAA_28           AAA domain
     0.0066   16.6   0.7      0.035   14.3   0.7    2.2  1  AAA_33           AAA domain
  ------ inclusion threshold ------
      0.019   15.4   1.1      0.036   14.5   0.7    1.9  2  AAA_16           AAA ATPase domain
      0.029   14.0   0.0      0.043   13.5   0.0    1.2  1  SRP54            SRP54-type protein, GTPase domain
      0.058   13.8   0.0        0.2   12.1   0.0    1.9  1  AAA_17           AAA domain
      0.071   13.0   0.0       0.13   12.1   0.0    1.4  1  NACHT            NACHT domain
      0.086   12.8   0.0       0.16   12.0   0.0    1.4  1  AAA_5            AAA domain (dynein-related subfamily)
       0.14   11.6   0.0       0.21   11.0   0.0    1.1  1  KTI12            Chromatin associated protein KTI12
       0.17   12.1   0.0       0.37   11.1   0.0    1.6  1  AAA_22           AAA domain
        1.1    8.2   8.2        1.4    7.8   8.2    1.2  1  DEC-1_N          DEC-1 protein, N-terminal region


Domain annotation for each model (and alignments):
>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0     9e-19   1.3e-15       3     185 .]      21     201 ..      20     201 .. 0.77

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 9e-19
                      ESTTSSHHHHHHHHHHHHHHTTE.EEEESSSTTSH.HHHHHHHHHHTCS---HHHHHHHHHHH..HHHTTHHHHHHHHHTT-EEEEES-HHHHH CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeegikvvltrepggte.iGekirelllkeeeleeqteallfaad..riehleekikpalkqgktvivdRylfSsl 93 
                      G+DG+GKttqa  l+e+l+++g+ +   r  gg + +G+++++l     e    +  ll + +  r  +++  +   l  g+t ++dRy  S +
       KIR63538.1  21 GIDGSGKTTQAHHLAEALTAAGRPATYHRNAGGRRwLGRVAQRLGRPDAERLVGRRGLLAVESvlRWLAIAAALLSCLVTGRTAVMDRY--SAC 112
                      9**********************966666666555277777777776666666667777766611444555778888899********9..556 PP

                      HHHHT..TTTTTCHHHHHHGGGTTSE-SEEEEEESSHHHHHTSCCTTSSTTTSHHHHHHHHHHHHHHHHHHHHTTSTEEEEETTS-HHHHHHHH CS
  Thymidylate_kin  94 aYqga..kegvdldlvlslnedvllkPdltflldvdpevalkRlakrdeldeeeeeqldflrkvrerylelakederiliidasksieevheeI 185
                       Y+++   +g  ++ + +  + +++ P +tfll vdp++a++R+++r++    + e    l+   + y  l +   +++++da ++ eev ++I
       KIR63538.1 113 QYASIraHGGQRWERLARAGYRLFPPPQVTFLLAVDPAEAYQRIERRGT----DHETMGWLTAADTAYRTLPE-FPSFVVVDAGRPPEEVSRQI 201
                      6666511555556666667777777************************....66677777777787778885.789*************9998 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   8.8e-07    0.0013       1     116 [.      17     162 ..      17     174 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8.8e-07
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf..gvnlrdvakenglllevdpe.aldeskrldedkldklldaleenss.......aleegknlvidghlaeles 88 
                 ++l G+ G+GKtt a++L++ l +      +  +a  +++l  v +    ++ +rl+  +   +++ + ++ +               ++ g+ a +  
  KIR63538.1  17 VALIGIDGSGKTTQAHHLAEALtAAgrPATYHRNAGGRRWLGRVAQRlGRPDAERLVGRRGLLAVESVLRWLAiaaallsC-------LVTGRTAVMDR 108
                 6899*****************944477566667777777777777777555555555555555555555554433334442.......55555555555 PP

      AAA_18  89 eaakdikk..........................vvLtaspeelleRlekRgye 116
                 ++a ++                            + L ++p e ++R+e+Rg+ 
  KIR63538.1 109 YSACQYASirahggqrwerlaragyrlfpppqvtFLLAVDPAEAYQRIERRGTD 162
                 555555544444456677777777789999999999999999999999999953 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   2.8e-06    0.0042       2     148 ..      17     179 ..      16     195 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.8e-06
      AAA_28   2 ivitGgestGKTtlleaLaar....gyp..vvpEaareileeklakgedalpwve....dllafaervleeqleeeaaa...aankvlfcDrglldtla 87 
                 ++++G  ++GKTt + +La+     g p  +++ a+ + +  + a++ +  ++++    + l   e vl++ + ++a      ++++ ++Dr + + +a
  KIR63538.1  17 VALIGIDGSGKTTQAHHLAEAltaaGRPatYHRNAGGRRWLGRVAQRLGRPDAERlvgrRGLLAVESVLRWLAIAAALLsclVTGRTAVMDRYSACQYA 115
                 89*************999966566676653557787777777777766644442233334444445556554433333367789999999**9999999 PP

      AAA_28  88 Yarayggeaeaelea..aarekrydlvfllppap.eidddgeRredleereaiderlrealrel 148
                  +ra+gg++ + l +     +   +  fll+++p e+ +  eRr +++e + + ++   a+r+l
  KIR63538.1 116 SIRAHGGQRWERLARagYRLFPPPQVTFLLAVDPaEAYQRIERRGTDHETMGWLTAADTAYRTL 179
                 9999999966666654433455567789998888755588899988888888777777777765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.7   2.3e-05     0.035       2      25 ..      17      40 ..      17     174 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.3e-05
      AAA_33  2 vllvGlpGsGKstlaerllkklga 25
                v l+G  GsGK+t a++l+++l+a
  KIR63538.1 17 VALIGIDGSGKTTQAHHLAEALTA 40
                5689****************9983 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.7   2.4e-05     0.036      20      62 ..       8      49 ..       1     175 [. 0.67
   2 ?   -0.2   0.0      0.77   1.1e+03      72      72 ..     143     143 ..      71     234 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.4e-05
      AAA_16 20 rsgrp..elvllsGesGvGKsslvrellralekdggiflrgkcdq 62
                r+g+   ++v l+G  G+GK++ + +l++al+++g     +++++
  KIR63538.1  8 RRGGArlRAVALIGIDGSGKTTQAHHLAEALTAAG---RPATYHR 49
                33333579*********************999884...2333333 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.77
      AAA_16  72 l 72 
                 +
  KIR63538.1 143 F 143
                 2 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.9e-05     0.043       3      29 ..      16      42 ..      14      47 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.9e-05
                EEEEEESTTSSHHHHHHHHHHHHHHTT CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkeg 29
                 ++l+G+ G+GKTt +  La+ l++ g
  KIR63538.1 16 AVALIGIDGSGKTTQAHHLAEALTAAG 42
                5789****************9998766 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013       0.2       1      19 [.      20      38 ..      20     166 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                EE-TTSSHHHHHHHHHHHH CS
      AAA_17  1 lGgPGsGKgtqceklveky 19
                +G+ GsGK+tq+ +l+e +
  KIR63538.1 20 IGIDGSGKTTQAHHLAEAL 38
                5999************987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.9e-05      0.13       1      29 [.      15      43 ..      15      49 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.9e-05
                SCEEEEC-TTTCHHHHHHHHHHHHCTS-S CS
       NACHT  1 rlvilqGeaGsGKTtLlqklalawaegkl 29
                r v+l G  GsGKTt +++la+a+ +   
  KIR63538.1 15 RAVALIGIDGSGKTTQAHHLAEALTAAGR 43
                5799******************9977655 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011      0.16       2      29 ..      17      47 ..      16      61 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                EEEE--SSSSHHHHHHHGGGGB...S--EEE CS
       AAA_5  2 vlLvGppGtgKselaerlaaal...nrevey 29
                v L+G  G+gK++ a +la+al   +r+ +y
  KIR63538.1 17 VALIGIDGSGKTTQAHHLAEALtaaGRPATY 47
                679*******************665555544 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00014      0.21       4      38 ..      17      51 ..      16      55 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
                EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH CS
       KTI12  4 vvltGlPssGKstrakeLakaleeekrsvvvidde 38
                v l G+  sGK+t a++La+al++ +r  ++++++
  KIR63538.1 17 VALIGIDGSGKTTQAHHLAEALTAAGRPATYHRNA 51
                56889999*******************99999875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00024      0.37       7      32 ..      16      41 ..      12      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldee 32
                 ++++G  G+GKTt +  l+e l+++
  KIR63538.1 16 AVALIGIDGSGKTTQAHHLAEALTAA 41
                5789*****************99755 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   8.2   0.00094       1.4     116     147 ..     206     238 ..     140     251 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00094
     DEC-1_N 116 aapapalaaapppapapvpddp.apapaapqaa 147
                 aa +pa +aap  a ap++ +p  papaap+ +
  KIR63538.1 206 AAWLPAQGAAPAEAAAPAAPPPaEPAPAAPTGT 238
                 466666666666666666666634666666443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 1961.15
//
Query:       KIR63539.1  [L=298]
Description: RpiR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-26   90.8   0.2    1.1e-25   90.0   0.2    1.4  1  SIS            SIS domain
    3.3e-16   59.0   0.0    6.2e-16   58.1   0.0    1.5  1  HTH_6          Helix-turn-helix domain, rpiR family
    5.6e-09   36.1   3.1    6.7e-07   29.4   0.3    2.7  2  SIS_2          SIS domain


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.2   1.9e-29   1.1e-25       4     130 ..     139     265 ..     136     266 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 1.9e-29
                 TSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEE CS
         SIS   4 kakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadlal 102
                  a ri v+GaG+s+++a++++ kl +ig +++ + d ++  ++  al+ ++d+ + is+sg t+d+++++e+a++rga ++a+T+ + sp+   ad +l
  KIR63539.1 139 GAGRIEVYGAGASGFVASDFQQKLHRIGRMAFYFPDVHTALTS-AALLAKGDVAVGISHSGTTADVIEVLEQARARGASTVALTNFPRSPITDVADFVL 236
                 689************************************9999.******************************************************* PP

                 EEEEECHC.SSSHCHHHHHHHHHHHHHHH CS
         SIS 103 yinaepet.lvastksltaqlaaldalav 130
                 +++a + t   +++ s +aql+++d l+v
  KIR63539.1 237 TTAARETTyRSGAMASRLAQLTVVDCLFV 265
                 *************************9997 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0     1e-19   6.2e-16       6      75 ..      13      82 ..       8      84 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 1e-19
                HHHHH-----HHHHHHHHHHHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSHHHH--HHHHHHH CS
       HTH_6  6 kiqskkekltksekkiaeyilaspdkaielsikalAkaaavSeativrfakkLGfkGFselklaLakela 75
                 i+    +l+++e+++a  + ++p  a + +i +lA aa+ Seat++rf+++ G+ G+++l+++La e a
  KIR63539.1 13 HISGLLPSLSPAEQRVARLVVSDPADAARRTITDLATAAETSEATVIRFCRSVGMDGYPQLRIRLAAEAA 82
                567777899*********************************************************9987 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.3    0.0011       6.4      12      57 ..     116     162 ..     107     183 .. 0.82
   2 !   29.4   0.3   1.1e-10   6.7e-07      93     137 ..     177     221 ..     164     222 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0011
                 HHHHHSHHHHHHHH.HHHHHHHHTT--EEEEESGGGHHHHHHTSSST CS
       SIS_2  12 rivetqaeaiekaa.eliadslenggkvlvfGsGhSaalaeelaara 57 
                 r+ve+ ae+++ a+ e +++++   g++ v+G+G S   a+++  ++
  KIR63539.1 116 RAVEETAEQLDPAVcEQVVEAIVGAGRIEVYGAGASGFVASDFQQKL 162
                 566788888876543899**********************9997665 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 1.1e-10
                 HHHHHHTT--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE CS
       SIS_2  93 kqilrlvrlkpgDvLlviSnsGnnavvveaaeaakergmkviAlt 137
                 +++ + + l++gDv + iS+sG  a v+e++e+a++rg+ ++Alt
  KIR63539.1 177 TALTSAALLAKGDVAVGISHSGTTADVIEVLEQARARGASTVALT 221
                 5555566689**********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2227.01
//
Query:       KIR63540.1  [L=299]
Description: N-acetylmuramic acid-6-phosphate etherase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-07   30.4   0.2    6.5e-07   29.5   0.2    1.5  1  SIS_2     SIS domain
    5.9e-06   26.2   0.0    3.9e-05   23.5   0.0    2.1  2  SIS       SIS domain
     0.0026   17.6   0.0     0.0076   16.0   0.0    1.8  2  UBA_4     UBA-like domain


Domain annotation for each model (and alignments):
>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.2   1.1e-10   6.5e-07       5     136 ..      32     163 ..      28     165 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.1e-10
                 HHHHHHHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEESGGG.HHHHHHTSSSTT-BTTEEEE--GGGSSSSST..THHHHHTT-TTHHHHHHHHTT-- CS
       SIS_2   5 evteilerivetqaeaiekaaeliadslenggkvlvfGsGhS.aalaeelaaragglaeferialpalalhtdaeatkssalerdegyakqilrlvrlk 102
                 e+ + + ++v++  ++i++ ++l +++l+ g++v+ fG+G S ++ + ++a  a ++   +  +   la   da+ ++ +++e d   +++ +++  + 
  KIR63540.1  32 EADRRVPAAVAAVLDEIAATVDLAVAALRGGHRVHYFGAGTSgRLGVLDAAELAPTFNSPRHWFCAHLAGGPDAMWRAVEDAEDDHRGGSAEAAD-CVG 129
                 566666677788889**************************95577888888888888899999999**99999888999999988888877777.899 PP

                 TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEE CS
       SIS_2 103 pgDvLlviSnsGnnavvveaaeaakergmkviAl 136
                 +gD+ + + +sG+ + v+ a+ a +++g+ ++ l
  KIR63540.1 130 AGDLVVGLAASGRTPYVLGALAASRAQGASTVLL 163
                 *****************************99855 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.14   8.2e+02       4      20 ..      61      77 ..      58      91 .. 0.75
   2 !   23.5   0.0   6.6e-09   3.9e-05      48     128 ..     125     207 ..     109     210 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.14
                TSSEEEEEESHHHHHHH CS
         SIS  4 kakriyvlGaGtsyaia 20
                  +r+ ++GaGts+ ++
  KIR63540.1 61 GGHRVHYFGAGTSGRLG 77
                568999*******9876 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 6.6e-09
                 GGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEEEECHC..SSSHCHHHHHHHHHHHHH CS
         SIS  48 lalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadlalyinaepet..lvastksltaqlaaldal 128
                  +++  +dlv+ ++ sg+t+ ++ a+   +++ga +++++ +++  +a + d+ + + ++pe+  +   +k+ taq ++l+++
  KIR63540.1 125 ADCVGAGDLVVGLAASGRTPYVLGALAASRAQGASTVLLCANPEAEAAGSVDVFIGVDTGPEVvtGSTRMKAGTAQKLVLNTF 207
                 68999**********************************************************88888899999998888776 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.3e-06    0.0076       4      33 ..     238     267 ..     236     269 .. 0.91
   2 ?   -3.7   0.0       1.9   1.2e+04      12      25 ..     273     286 ..     271     290 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.3e-06
       UBA_4   4 iaqFqaiTGadeekArqlLeannWdLerAi 33 
                 i+ +++ TG+ ee++r+ L  +++dL +A+
  KIR63540.1 238 ISILMEATGCAEEVCRRALHEADGDLKTAL 267
                 55679*********************9996 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.9
       UBA_4  12 GadeekArqlLean 25 
                 Ga+   Ar  L ++
  KIR63540.1 273 GAEVPAARAALARA 286
                 78888898888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2180.36
//
Query:       KIR63541.1  [L=686]
Description: amylo-alpha-1,6-glucosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-40  136.7   0.1    9.7e-40  136.2   0.1    1.2  1  GDE_N_bis  N-terminal domain of (some) glycogen debranching e
    3.4e-13   49.3   0.0    1.1e-12   47.6   0.0    1.7  1  GDE_C      Amylo-alpha-1,6-glucosidase


Domain annotation for each model (and alignments):
>> GDE_N_bis  N-terminal domain of (some) glycogen debranching enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.2   0.1   1.1e-43   9.7e-40       2     191 ..      10     191 ..       9     193 .. 0.92

  Alignments for each domain:
  == domain 1  score: 136.2 bits;  conditional E-value: 1.1e-43
   GDE_N_bis   2 kdgdlflvtdtdGdiaeegegsqGlFcrDtRfLsrlelqingespvllsssaekgnsalsvlltnpeledeeggipaetigirrervvngglfeelelt 100
                  dg +f+v++  Gdi+ + ++++G+F  DtRfLsr+ l++nge++  l s ++ +++++++ l  +  ++    + + +++i rer+v+g+++e++++ 
  KIR63541.1  10 LDGSTFVVSEDTGDIEATPSEPTGMFSLDTRFLSRWVLTVNGERLNAL-SYDDLQYYEARFFLVPGMATH----YIDAKLSIIRERMVGGSFREQVTIL 103
                 589*********************************************.555666669999999988777....999********************** PP

   GDE_N_bis 101 NynttpvefelslsfdaDFaDlfevrgfrrekrgkllrleaedeelrlayrgldgvvretriqfsaqpdtvkggtatwrlkLaphetwklg 191
                 N++++pv++++++  ++DFaDlf+v+    +k+g+ l  eae+++lrl yr+  +++ret+i+ s+  +  +++ +++ ++L+p+e+w++ 
  KIR63541.1 104 NHDEKPVDLQVRMDAGSDFADLFQVKDEIVNKKGE-LYAEAEADRLRLGYRR-GNFRRETVISCSRTAT-YDRNGFSFSVHLEPNEQWSTD 191
                 **************************886666776.778899********99.***********98665.58****************986 PP

>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   1.2e-16   1.1e-12      25     379 ..     269     627 ..     262     631 .. 0.74

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 1.2e-16
       GDE_C  25 iAGlpwFsd.WGRDtfI.aLsGllLvtgrfeeAreilltFaktlr................hGliPNllde.gqealyntvdaslwlieaiekYleyag 104
                 +AGlpwF    GRD+++  L+ l +++g+ +   +il +  +t+                  G    +++e  + ++y +vda+  +++ +++Y + +g
  KIR63541.1 269 AAGLPWFMTmFGRDSILtCLQVLPFAPGLSKTTLRILASLQGTRFddfrdedpgrilhemrYGETA-AFEEqPHSPYYGSVDATPLFVVLLDEYERWSG 366
                 79******88****976269999999**99999999998877765777788844444433333333.3333356677********************** PP

       GDE_C 105 daeil.......rriypvlqeilqkyvqGtky..kigldeedglisagerlnqlTWmDakvkgepvtPRdGkaveinaLwyaaLkileelaekalge.a 193
                 d++++       r +++ + +  +    G+ y    + ++++gl   +++  ++ W  +++++    P   + +e+++ +y+a + ++++a++  g+ a
  KIR63541.1 367 DESLVreleqecRAALKWIDDYADLV--GNGYiwYERRNTDTGL---ENQCWKDSWDSISYRDGTLLPFPRATCEVQGYAYDAKMRAARMAREFWGDpA 460
                 *****444333333333444433333..5554113333333444...45556788888**********************************9988844 PP

       GDE_C 194 kkssykelaekikesfekkFwdeaaaavakreilaDvlksseekdlslRpNflialslapellseekakkvlek.aeeeLltplGlktLdpedpeYkgn 291
                  + + ++ a+++ke f++ +w      v + + +a  l+++ ++   l  N  i   l   ++++++a+++ e+ +  +L   +G++tL++ + +Y+++
  KIR63541.1 461 YADRLEREAAQLKERFNRDWW------VDDGQFYALALDPDGRRADVLSSN--IGHLLWSGIVDHDRAERIAEHlVGPRLFSGWGVRTLAEGEVRYNPI 551
                 555555555555555555555......599************988889998..56678899999999999987626789*****************995 PP

       GDE_C 292 YdgsedsrdaaYHqGtvWvwllgsyveallkfgeklgkskealeevkalLeglekhleeaglgslsElfdgdaellpkgciaQAWSva 379
                            YH+Gt+W++  ++    l + g    +     + +  + + ++  l ea  g   El++      p++c  QAWS +
  KIR63541.1 552 ----------GYHNGTIWPFDNSFIAWGLRRYGFA-EEAAVIANGILDAARYFDGRLPEAFGGYQRELTKFPV-EYPTACSPQAWSTG 627
                 ..........7*********987665555555553.4444445666666667778899999999999998777.56999*******87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 5206.91
//
Query:       KIR63542.1  [L=276]
Description: hypothetical protein TK50_21120 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2120.81
//
Query:       KIR63543.1  [L=94]
Description: hypothetical protein TK50_21155 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 672.73
//
Query:       KIR63544.1  [L=102]
Description: hypothetical protein TK50_21215 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 719.78
//
Query:       KIR63545.1  [L=81]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-11   42.4   0.0    8.3e-11   41.9   0.0    1.2  1  HTH_17        Helix-turn-helix domain
    8.3e-05   22.3   0.0    0.00013   21.7   0.0    1.3  1  Phage_AlpA    Prophage CP4-57 regulatory protein (AlpA)
    0.00089   19.3   0.1     0.0014   18.6   0.1    1.3  1  HTH_22        HTH domain
     0.0024   17.6   0.0     0.0043   16.8   0.0    1.4  1  HTH_8         Bacterial regulatory protein, Fis family
     0.0032   17.2   0.0     0.0069   16.2   0.0    1.5  1  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
      0.017   14.8   0.1      0.027   14.1   0.1    1.3  1  Sigma70_r4_2  Sigma-70, region 4
      0.024   14.0   0.0      0.049   13.0   0.0    1.5  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
      0.024   14.6   0.0      0.049   13.7   0.0    1.5  1  HTH_29        Winged helix-turn helix
      0.034   14.3   0.0      0.068   13.3   0.0    1.5  1  HTH_28        Helix-turn-helix domain
      0.073   13.2   0.0        0.1   12.8   0.0    1.3  1  AbiEi_4       Transcriptional regulator, AbiEi antitoxin


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   4.6e-14   8.3e-11       3      46 ..      17      60 ..      17      64 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 4.6e-14
      HTH_17  3 tveEaAelLgvsrstvyrlirrgelpaakiGrrwriprsdleew 46
                +v+E+A++Lg+s+ t+yr i++g++pa k+ +r+ ip   l+++
  KIR63545.1 17 SVSEVAAILGMSEVTLYRAIHAGQFPAIKVRGRLVIPARVLDDM 60
                699**************************5566*****999986 PP

>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   7.1e-08   0.00013       5      30 ..      17      42 ..      13      51 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 7.1e-08
  Phage_AlpA  5 rlreVeqktglsrstiYrlikdgeFP 30
                ++ eV++++g+s+ t+Yr i  g+FP
  KIR63545.1 17 SVSEVAAILGMSEVTLYRAIHAGQFP 42
                6789********************** PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   7.9e-07    0.0014      42      62 ..      16      36 ..      16      37 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 7.9e-07
      HTH_22 42 gavekvAekLgiSraTvYryL 62
                ++v++vA+ Lg+S+ T+Yr +
  KIR63545.1 16 HSVSEVAAILGMSEVTLYRAI 36
                59****************976 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.4e-06    0.0043      20      39 ..      17      36 ..      14      38 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.4e-06
                -HHHHHHHHTS-HHHHHHHH CS
       HTH_8 20 nkskAArlLGisRrtLyrKL 39
                 +s++A +LG+s  tLyr +
  KIR63545.1 17 SVSEVAAILGMSEVTLYRAI 36
                589***************86 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.8e-06    0.0069      18      40 ..      16      38 ..      14      43 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.8e-06
      HTH_23 18 lsvreIAreLgvsrrTvyrwlkr 40
                +sv+e+A++Lg+s+ T+yr +++
  KIR63545.1 16 HSVSEVAAILGMSEVTLYRAIHA 38
                599****************9986 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.5e-05     0.027      28      48 ..      17      37 ..      16      39 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
                  -HHHHHHHHT--HHHHHHHHH CS
  Sigma70_r4_2 28 sykEIAellgisegtVksrls 48
                  s  E+A++lg+se+t +++++
    KIR63545.1 17 SVSEVAAILGMSEVTLYRAIH 37
                  889**************9998 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.8e-05     0.049      29      49 ..      17      37 ..      16      39 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.8e-05
  HTH_Tnp_ISL3 29 svkavArqlgvSwtTVwrild 49
                  sv++vA++lg S+ T+ r+++
    KIR63545.1 17 SVSEVAAILGMSEVTLYRAIH 37
                  9*****************997 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.7e-05     0.049      12      34 ..      16      37 ..      10      39 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.7e-05
      HTH_29 12 vstvsqiAkllglsrrtvyrwlk 34
                +s vs++A++lg+s+ t yr+++
  KIR63545.1 16 HS-VSEVAAILGMSEVTLYRAIH 37
                66.9*****************98 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.8e-05     0.068      13      34 ..      16      37 ..      14      38 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.8e-05
      HTH_28 13 hsvreaArelgisrrtvyrWik 34
                hsv+e+A++lg+s+ t+yr i+
  KIR63545.1 16 HSVSEVAAILGMSEVTLYRAIH 37
                79*****************997 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.6e-05       0.1      15      37 ..      17      40 ..       7      49 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.6e-05
     AbiEi_4 15 ttrelea.aGispsalrrLvrkGw 37
                +++e++a +G+s+ +l+r++++G 
  KIR63545.1 17 SVSEVAAiLGMSEVTLYRAIHAGQ 40
                789*****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 633.71
//
Query:       KIR63546.1  [L=318]
Description: hypothetical protein TK50_21230 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.038   14.0   5.5         33    4.8   0.0    4.8  4  TPR_7     Tetratricopeptide repeat
      0.041   13.8  15.5       0.31   11.0   3.3    5.0  5  TPR_10    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.061   5.5e+02       4      21 ..      69      86 ..      68      96 .. 0.84
   2 ?    4.8   0.0    0.0037        33      13      34 ..     118     137 ..     108     139 .. 0.85
   3 ?    3.2   0.5     0.012   1.1e+02       6      27 ..     201     222 ..     200     232 .. 0.87
   4 ?    2.9   0.0     0.015   1.3e+02       6      28 ..     245     267 ..     244     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.061
       TPR_7  4 nLarlysrlGdyeeAiel 21
                 +a++ ++lG++ + + l
  KIR63546.1 69 LMASTAFDLGHWNDSAAL 86
                5899********998876 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0037
       TPR_7  13 GdyeeAielyeqsLaltkdped 34 
                 ++ + A++++ +  a++ +p++
  KIR63546.1 118 NEPDAALTYFAR--AMRAAPDG 137
                 7899********..99988876 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.012
       TPR_7   6 arlysrlGdyeeAielyeqsLa 27 
                 a ++ +l++ e+A+++ +++L+
  KIR63546.1 201 AAAWLDLRNGEQAAKYAREALQ 222
                 6799************999775 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.015
       TPR_7   6 arlysrlGdyeeAielyeqsLal 28 
                 a ++  ++d++ A+e ++ +L l
  KIR63546.1 245 AAAHLHMRDRDGAAEALQGVLDL 267
                 6789999********99986654 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2     0.018   1.6e+02      14      28 ..      36      50 ..      33      52 .. 0.85
   2 ?   -1.9   0.0      0.39   3.5e+03       9      27 ..      71      89 ..      70      91 .. 0.80
   3 ?    2.2   0.1      0.02   1.8e+02      14      30 ..     116     132 ..     111     134 .. 0.86
   4 ?   11.0   3.3   3.5e-05      0.31       8      35 ..     200     227 ..     194     228 .. 0.87
   5 ?    3.4   0.0     0.008        72       4      30 ..     240     266 ..     239     271 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.018
      TPR_10 14 qrgrydeAealleea 28
                +r+ +deA++l+e++
  KIR63546.1 36 ARRLRDEARKLAERT 50
                67889*******986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.39
      TPR_10  9 analrqrgrydeAeallee 27
                a + +++g ++++ al++ 
  KIR63546.1 71 ASTAFDLGHWNDSAALARA 89
                6677899999999999875 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.02
      TPR_10  14 qrgrydeAealleeala 30 
                  r++ d+A+ ++ +a++
  KIR63546.1 116 WRNEPDAALTYFARAMR 132
                 699***********987 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 3.5e-05
      TPR_10   8 LanalrqrgrydeAealleealairrrl 35 
                  a+a  +++++++A ++++eal+++++l
  KIR63546.1 200 AAAAWLDLRNGEQAAKYAREALQVYQAL 227
                 588999*******************986 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.008
      TPR_10   4 slnNLanalrqrgrydeAealleeala 30 
                 ++ + a+a+ +++++d+A + l+ +l+
  KIR63546.1 240 TQIDVAAAHLHMRDRDGAAEALQGVLD 266
                 5667899**9********999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2414.93
//
Query:       KIR63547.1  [L=133]
Description: sulfurtransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-09   35.9   0.0    1.1e-08   35.6   0.0    1.2  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0     6e-13   1.1e-08      12     106 ..      31     119 ..      20     120 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 6e-13
   Rhodanese  12 gkvallDvRppee.YekghIpgAvnvskdtlsrakkseapllelpeellel.gidnkktvvvycdgggraaaaaallkklGyknvsvldGGfkawke 106
                 g+  l+D+R++++  ++g +pgAv +        + + +  l+   e++      +++++vv+c+ g +++ a a l+ lG+++   l GG++aw e
  KIR63547.1  31 GA-LLVDTRTDAQrRDQGDLPGAVVI-------DRTVLEWRLDPASEWRIPeATGYDREIVVVCRQGYSSSLAVASLRTLGLHRATDLVGGVEAWRE 119
                 33.4*****77772466*********.......44444455555555555467889*************9999999999****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1017.23
//
Query:       KIR63548.1  [L=258]
Description: hypothetical protein TK50_21310 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 1712.11
//
Query:       KIR63549.1  [L=237]
Description: hypothetical protein TK50_21375 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1783.35
//
Query:       KIR63550.1  [L=180]
Description: HNH endonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-15   54.2   0.1    1.4e-14   53.7   0.1    1.2  1  HNH_5     HNH endonuclease
    2.8e-10   40.2   0.2    4.3e-10   39.6   0.2    1.3  1  HNH       HNH endonuclease
    1.1e-07   31.7   0.0    1.9e-07   30.9   0.0    1.4  1  HNH_4     HNH endonuclease
  ------ inclusion threshold ------
      0.011   16.5   0.0       0.53   11.0   0.0    2.4  2  zf-RVT    zinc-binding in reverse transcriptase


Domain annotation for each model (and alignments):
>> HNH_5  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.1   3.1e-18   1.4e-14       1      52 [.      91     138 ..      91     141 .. 0.93

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 3.1e-18
       HNH_5   1 CiyCgkeiaekelseeHIiPeslGGkltisnlvtlCkkCNqkkgqkvdaals 52 
                 C+yC+ +  e   +++H++P+s+GG++ ++n+v++C +CN+ kg+k++a+l+
  KIR63550.1  91 CAYCRGPA-E---TIDHVFPRSRGGRHAWENVVAACARCNHTKGDKTPAELG 138
                 *******4.4...6**********************************9985 PP

>> HNH  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.2   9.5e-14   4.3e-10       1      47 []      91     132 ..      91     132 .. 0.92

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 9.5e-14
         HNH   1 CeyCgrkfhksealevdHiipisqggaddieNlqllCksCHnkkhdr 47 
                 C yC  +       ++dH+ p+s+gg++ +eN++++C +C+ +k+d+
  KIR63550.1  91 CAYCRGPA-----ETIDHVFPRSRGGRHAWENVVAACARCNHTKGDK 132
                 88888883.....699****************************985 PP

>> HNH_4  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   4.2e-11   1.9e-07      21      54 ..     101     134 ..      98     135 .. 0.97

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 4.2e-11
                 EEESSTTTT---BSGGGEEEES-GGGGTSSSSSS CS
       HNH_4  21 iDHilPrsrskdDsvsNkVLvlrdaNqeKsnrtP 54 
                 iDH++Prsr+   ++ N V +++++N +K+++tP
  KIR63550.1 101 IDHVFPRSRGGRHAWENVVAACARCNHTKGDKTP 134
                 9********************************9 PP

>> zf-RVT  zinc-binding in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.53      59      85 .]      89     115 ..      62     115 .. 0.79
   2 ?    3.3   0.0     0.031   1.4e+02      12      44 ..     127     160 ..     116     176 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
      zf-RVT  59 srCqlCgqeeEtieHlfleCpfakelW 85 
                  rC  C    Eti+H+f + +  ++ W
  KIR63550.1  89 WRCAYCRGPAETIDHVFPRSRGGRHAW 115
                 38***************8877666666 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.031
      zf-RVT  12 ekkekvklakliWkskappkvk.fflWlllknrl 44 
                 ++k + + a+l W+ +app v    +W++l +r 
  KIR63550.1 127 HTKGDKTPAELGWRLHAPPAVPkGTAWRVLGHRA 160
                 444556789999*****99885599999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1391.65
//
Query:       KIR63551.1  [L=166]
Description: hypothetical protein TK50_21415 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.057   13.9   0.0       0.11   13.0   0.0    1.5  1  MG2       MG2 domain


Domain annotation for each model (and alignments):
>> MG2  MG2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     6e-06      0.11      55      93 ..      72     108 ..      38     112 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6e-06
                 E-CTTEEEEEEE--TT--SEEEEEEEEECSTTT-EEEEE CS
         MG2  55 tdetggaesefalpeaaklGeysvelsadsaeeslssgs 93 
                   ++g+  + +++p + + G+ysvel  + a++ +++++
  KIR63551.1  72 RPNNGFLTGAVTIPGNKQAGDYSVEL--RCANGGTATTT 108
                 567899********************..44444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1155.64
//
Query:       KIR63552.1  [L=426]
Description: kynureninase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-12   47.0   0.0    2.3e-12   46.6   0.0    1.1  1  Aminotran_5  Aminotransferase class-V
  ------ inclusion threshold ------
       0.52   10.4   4.5        1.3    9.1   0.1    2.4  2  Shadoo       Shadow of prion protein, neuroprotective


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   2.6e-16   2.3e-12      52     296 ..      87     345 ..      80     390 .. 0.78

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 2.6e-16
                  HHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEE..EEEEEBET...TSCBEGGGHHHH-...-TTEE CS
  Aminotran_5  52 vaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgak..vkviplde...egeldldelekll...nektk 141
                  va+l++a+   e +++ + t  + l + s+ r   ++++i++ ++   +   + +  a+++g++   +v++l +   e  l++ ++++ll    ++++
   KIR63552.1  87 VARLVGARP-TEAVVMNSLTVDLHLLMVSFYRPAGRRTRILIEDSAFPSDSYAVRSQARFHGLDpdATVLRLRPrpgEDALRTADVTDLLaaeGDTIA 183
                  899*****7.88888888899*********999**********************99999997533344444331113445566677777443699** PP

                  EEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTT..TTSSTT-EEEEEEHHHHHTS..SS.ST..TSEEEEE CS
  Aminotran_5 142 lvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghK..llgPtGiGvlyvrkellekleplllgg..emveevs 235
                  lv +  v+  tG + ++++i+++ +++ga+v  D a a+g  p+ ++++gvDf+a  + K  + gP  +  ++v +++l+++    + g  ++ +  +
   KIR63552.1 184 LVLLGGVNYLTGELLDIPAITAAGRAAGAVVGWDLAHAAGNVPLALHDWGVDFAAWCSYKylNSGPGALAGVFVHERHLGRADLPRFEGwwSTDAATR 281
                  ************************************************************86679999999999999999996555555114445555 PP

                  TTEEEEHCTTGGGS....SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCTSTT CS
  Aminotran_5 236 leettfaeapskfea...GTpnvagiiglgaaleyleeigleaiekhekelaeyllerlkslpg 296
                  +e t ++ +p   ea     p++ ++  +++ le++++ig+ a ++++ +l+ yl+  l+++  
   KIR63552.1 282 FEMTPTSRPPATVEAwqvSNPPILAMGPVRTSLELFDSIGMPALRERSLRLTGYLERLLDEVTA 345
                  588888999999998444589**************************************99653 PP

>> Shadoo  Shadow of prion protein, neuroprotective
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   1.0     0.022     2e+02      49      68 ..     204     223 ..     194     233 .. 0.61
   2 ?    9.1   0.1   0.00015       1.3      17      57 ..     382     422 ..     365     425 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.022
      Shadoo  49 aaagaaagaaagaaaglaag 68 
                 +aag aaga  g     aag
  KIR63552.1 204 TAAGRAAGAVVGWDLAHAAG 223
                 45555555555544444443 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00015
      Shadoo  17 argglrggargasrvrvrpaprysaagsslrvaaagaaaga 57 
                    g+ + ar    vr  p p ys+   + rva a aa+ a
  KIR63552.1 382 HEHGVVADAREPDVVRFAPVPLYSTYHDCWRVADALAATVA 422
                 45689999************************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3368.30
//
Query:       KIR63553.1  [L=493]
Description: betaine-aldehyde dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-155  518.8   0.1   1.2e-155  518.6   0.1    1.0  1  Aldedh           Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.029   13.4   0.0      0.061   12.4   0.0    1.4  1  LuxC             Acyl-CoA reductase (LuxC)
      0.087   12.7   0.0       0.18   11.7   0.0    1.5  1  RETICULATA-like  Protein RETICULATA-related


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  518.6   0.1    2e-159  1.2e-155       6     462 .]      24     488 ..      20     488 .. 0.96

  Alignments for each domain:
  == domain 1  score: 518.6 bits;  conditional E-value: 2e-159
                 SSEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH.HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHH CS
      Aldedh   6 setievinPatgeviakvpaataedvdaavaaAkeafk.awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyae 102
                 ++++ + +P+tge++ +v +a++++vd+avaaA++a +  w ++  ++Rae+Lr++ad le+r  +l+++e+++tGk++++ar+ +v++a+  +r +ae
  KIR63553.1  24 GRRFTKRSPVTGEPVFEVVEADRSTVDDAVAAARAALHgPWGRMGERDRAEVLRRVADELERRFADLVTAEVADTGKSISQARTlDVPRAAANFRAFAE 122
                 36799*********************************88*********************************************************** PP

                 HHHHHSEEEEEE.C...TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTC.CH CS
      Aldedh 103 laeklegevlps.s...egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgs.ev 196
                  + +   e++++ +    ++l++ +r+P+Gvv++I+PWN Plll++wk+apala+GN+vv+KP+eetp+sa+llae++++ag+P+gv+n+v+g g  ++
  KIR63553.1 123 IVATAPTESFTTvTptgGRALNYAVRKPVGVVAVIVPWNLPLLLLTWKVAPALACGNAVVVKPSEETPASATLLAEVLAAAGVPDGVFNLVHGFGPdSA 221
                 *9997666654444566899**************************************************************************75168 PP

                 HHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT CS
      Aldedh 197 gealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakk 295
                 ge l++h +vd+++ftG++++g  i++aaa+ +k v++ElGGkn+ +v++daDld+av++ v+++f n GQvC +++r++vq+ ++defv +l++aa +
  KIR63553.1 222 GEFLTRHADVDAITFTGESATGGAIMRAAADGVKAVSFELGGKNAGLVFADADLDAAVAGSVRSSFTNGGQVCLCTERIYVQRPVFDEFVGRLAKAADA 320
                 9************************************************************************************************** PP

                 --BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT..E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHS CS
      Aldedh 296 lkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGge..reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNd 392
                 l  g p de+t   Plis+++++kv +y + a++ega+   Gg      + ++ g++v+Ptvl+++ pd+r  +eEiFGPV+ v +f++eeea ++aN 
  KIR63553.1 321 LAYGWPADEATVNMPLISHQHRDKVLGYHDLARAEGAEFRAGGGtpAFGDARDGGAYVRPTVLTGLGPDARTNREEIFGPVVHVAPFDTEEEAYALANG 419
                 *********99999***************************88877666777778******************************************** PP

                 SSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 393 teyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 teyGLaa+v+t+d+ ra+r+ +rl+aG v++N++   +  + pfgGvk+Sg+Gregg ++l++y+e+ +v
  KIR63553.1 420 TEYGLAATVWTRDVGRAHRAGARLDAGIVWVNTWFLRDLRT-PFGGVKASGIGREGGVHSLDFYSELTNV 488
                 ***************************************99.***********************98775 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     1e-05     0.061      83     275 ..     144     329 ..     138     348 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1e-05
        LuxC  83 syekaqprglvlhvlsgNvpll.pvmsilqglLvknvnllkvSssdpflaaallksladvdenhtladslsvvyfksgdtkleeeiv..qnaDvvvawG 178
                 +y  + p g+v  +++ N pll   + ++ +l ++n+ ++k+S + p  a  l+  la       + + +    +  g ++  e +   +++D++   G
  KIR63553.1 144 NYAVRKPVGVVAVIVPWNLPLLlLTWKVAPALACGNAVVVKPSEETPASATLLAEVLAAAGVPDGVFNLV----HGFGPDSAGEFLTrhADVDAITFTG 238
                 588899**************862579*****************999988888877777766554444433....3334444444444113555666666 PP

        LuxC 179 geeaikaiseklkpgkqlikf..GakvSfavvdkealeeealdkaaeraAkDiivfdQqAClspqvvfvekddkieidefaeaLaaaLekrarilpkak 275
                  +++  ai   ++ g + ++f  G k    v+   a    +ld+a+      + +   q Cl    ++v+       def+ +La+a +  a  +p+ +
  KIR63553.1 239 ESATGGAIMRAAADGVKAVSFelGGKNAGLVFAD-A----DLDAAVAGSVRSSFTNGGQVCLCTERIYVQ---RPVFDEFVGRLAKAADALAYGWPADE 329
                 6666667777899999999886644444333332.3....578888888888888889999999999999...56899999999998888888888765 PP

>> RETICULATA-like  Protein RETICULATA-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.9e-05      0.18      35      95 ..      78     138 ..      68     156 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.9e-05
  RETICULATA-like  35 rfleEldlvladvvvgsvvnfalvwllAPtaslgsssassgalkkllkslPdnvFekslpg 95 
                      r+ +El+  +ad+v++ v++    ++ A+t+ + +++a+ +a++++++++P++ F   +p+
       KIR63553.1  78 RVADELERRFADLVTAEVADTGKSISQARTLDVPRAAANFRAFAEIVATAPTESFTTVTPT 138
                      6889**********************************99***************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3181.37
//
Query:       KIR63554.1  [L=246]
Description: endoglucanase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-22   78.2   6.7    9.5e-22   77.2   6.7    1.5  1  CBM_2            Cellulose binding domain
     0.0011   19.3   0.2       0.16   12.4   0.0    2.6  2  fn3              Fibronectin type III domain
     0.0028   18.1   0.0     0.0076   16.8   0.0    1.8  2  PhoD_N           PhoD-like phosphatase, N-terminal domain
  ------ inclusion threshold ------
      0.035   14.7   0.4       0.09   13.4   0.0    1.9  2  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
       0.11   12.5   0.0       0.11   12.5   0.0    2.9  3  Big_1            Bacterial Ig-like domain (group 1)


Domain annotation for each model (and alignments):
>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   6.7   2.7e-25   9.5e-22       1      91 [.     150     240 ..     150     244 .. 0.95

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 2.7e-25
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS---- CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsap 91 
                 ++at +v++ W +Gfta+vtv+ sg  +++gW+v+w +p  +r+  +Wn+ + +sG  v+++n+s+Ngt+apG+s++fG+    +g    p
  KIR63554.1 150 CTATATVDNRWIGGFTATVTVRASGGEPVQGWRVSWRWPGDERISAAWNGVAETSGADVVVRNASYNGTLAPGASTTFGMMVWSSGAAGVP 240
                 899*****************************************************************************99888876555 PP

>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   4.4e-05      0.16       8      72 ..      54     125 ..      52     128 .. 0.61
   2 ?    4.3   0.1     0.015        52      21      46 ..     171     197 ..     156     213 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.4e-05
                 EEEESSSEEEEEEE-CS...SSSSTEEEEEEEEEETTSTS....TEEEEEECSTSSEEEEESSSTTEEEEEE CS
         fn3   8 vsevtstsltvsWeppk...dgggpitgYeveyrekgsee....ewneftvprtttsvtltgLkpgteYevr 72 
                 v+++t+tslt++ +       g +p  +  +  + ++ e+    + +  t p+   +vt+ gL+pgt+Y +r
  KIR63554.1  54 VTATTATSLTITYTMLLsppCGYDPPMQVLLFASRSDAEQwrnpAAQALTGPERNGTVTIGGLTPGTDYWFR 125
                 666777777777765532123444444445555555555566544444445555559************987 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.015
                 E-CSSSSSTEEEEEEEEEETTSTS...TE CS
         fn3  21 eppkdgggpitgYeveyrekgsee...ew 46 
                  ++  gg p++g++v +r  g+e+   +w
  KIR63554.1 171 RAS--GGEPVQGWRVSWRWPGDERisaAW 197
                 444..99**********888887765544 PP

>> PhoD_N  PhoD-like phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.1e-06    0.0076      29      84 ..      81     135 ..      47     144 .. 0.61
   2 ?   -2.7   0.0       2.5   8.9e+03      29      42 ..     182     195 ..     164     216 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.1e-06
      PhoD_N  29 rvevevaedeafkkvvrkgtalatseldytvkvevtgLkpgqeyfYrfr.agsessp 84 
                 +v +  ++++a +      +al+ +e++ tv +   gL pg++y++rf   ++++ p
  KIR63554.1  81 QVLLFASRSDAEQWRNPAAQALTGPERNGTVTI--GGLTPGTDYWFRFSePDGKKDP 135
                 444444444333333344678888888888766..9************965555554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.5
      PhoD_N  29 rvevevaedeafkk 42 
                 rv++++  de+++ 
  KIR63554.1 182 RVSWRWPGDERISA 195
                 55566655555543 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.5e-05      0.09       9      83 ..      55     130 ..      50     154 .. 0.69
   2 ?   -1.8   0.1       1.4     5e+03      14      26 ..     179     191 ..     168     227 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.5e-05
  Pur_ac_phosph_N   9 tedtstsmtvsWitpe......ktkksvvrygtssdalestaeatsstyettnyksgyshkatltgLepgttYyYrvgdde 83 
                      t++t+ts+t++++         +++ +v+ ++  sda++ + +a +       +  + + ++t+ gL+pgt Y +r+   +
       KIR63554.1  55 TATTATSLTITYTMLLsppcgyDPPMQVLLFASRSDAEQWRNPAAQ-----ALTGPERNGTVTIGGLTPGTDYWFRFSEPD 130
                      5556677777776643222333445555555555555555555554.....3456788889***************97664 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.4
  Pur_ac_phosph_N  14 tsmtvsWitpekt 26 
                      +  +vsW+ p ++
       KIR63554.1 179 QGWRVSWRWPGDE 191
                      5566777765432 PP

>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.8       1.5   5.3e+03      52      63 ..      54      65 ..      52      66 .. 0.68
   2 ?   -1.9   0.3      0.97   3.5e+03       4      13 ..     147     156 ..     145     159 .. 0.58
   3 ?   12.5   0.0   3.1e-05      0.11       8      36 ..     165     194 ..     163     206 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.5
       Big_1 52 ltstkagtvtvt 63
                +t t+a + t+t
  KIR63554.1 54 VTATTATSLTIT 65
                677777777776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.97
       Big_1   4 vdtntltatv 13 
                 ++  t+tatv
  KIR63554.1 147 QSVCTATATV 156
                 4555666666 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 3.1e-05
       Big_1   8 tltatvkDangnpvagatVtfsvsg.gals 36 
                 t+t+tv+ + g pv+g  V+++ +g + +s
  KIR63554.1 165 TATVTVRASGGEPVQGWRVSWRWPGdERIS 194
                 89********************99966665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1810.09
//
Query:       KIR63555.1  [L=150]
Description: NUDIX hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-19   68.2   0.0    8.4e-19   67.9   0.0    1.1  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   4.7e-23   8.4e-19       2     118 ..       7     119 ..       6     132 .. 0.78

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 4.7e-23
                 EEEEEEEEEEETTSEEEEEEESSSSTTTEESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.....EEECSG CS
       NUDIX   2 lrravgvvllnekgevLlvrrskkpfpgWelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfl.....eevege 95 
                 +r+a+g+++++ kg+vLlvr s  ++++W++PgG vepgE+p++A+ RE+ EE+Gl+++l  +l    ++ap d      + +l+vf       e e  
  KIR63555.1   7 PRVAAGALFFDAKGRVLLVRPS--YKDHWDIPGGYVEPGESPRAACKREIGEELGLTVPLGPMLV--VDWAPADNE---GDKLLFVFDggiltPEQERS 98 
                 689****************988..8888***************************9886666665..344444433...66788999998754444444 PP

                 CSSTSTTTEEEEEEEEHHHHHHH CS
       NUDIX  96 lepndenevsevrwvpleellke 118
                 ++   ++e+ ++r+v+++ l ++
  KIR63555.1  99 IRF-GDGELTDWRYVDIDVL-DH 119
                 444.6************998.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1082.08
//
Query:       KIR63556.1  [L=80]
Description: hypothetical protein TK50_21580 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 574.80
//
Query:       KIR63557.1  [L=590]
Description: replication initiation protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.16   12.1   0.0       0.34   11.1   0.0    1.5  1  Helitron_like_N  Helitron helicase-like domain at N-terminus


Domain annotation for each model (and alignments):
>> Helitron_like_N  Helitron helicase-like domain at N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.9e-05      0.34     146     188 ..     267     307 ..     255     309 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.9e-05
  Helitron_like_N 146 arvFhrkleaflkdllkegvfGkvsayvytvEfQkRGlpHaHl 188
                      a +F r l+   +++  ++  G  ++y ++vE Q R +pHaH+
       KIR63557.1 267 AIHFARVLDRWWQNV--RRAAGWNVQYAGAVELQRRLAPHAHF 307
                      667777777777777..45778899*****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4280.87
//
Query:       KIR64175.1  [L=82]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 638.53
//
Query:       KIR64176.1  [L=352]
Description: tryptophan--tRNA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-67  225.8   0.0    8.6e-67  225.5   0.0    1.0  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.5   0.0   4.8e-71   8.6e-67       6     292 ..       4     285 ..       2     286 .. 0.97

  Alignments for each domain:
  == domain 1  score: 225.5 bits;  conditional E-value: 4.8e-71
                   -EEEEEEETSSS-BGG.GHHHHHHHHHHHHTTSEEEEEEEHHHHHTTTTT-SSHHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEETHHHHTTHHHHH CS
  tRNA-synt_1b   6 lrvysGidPTgklHlG.ylvplkklvelqkaghevffliaDlhAiigdpskaeerklrkreevlenaikaqlakgldpekaevvlqsewlehlelae 101
                    r+++G +PTg+lHlG y++++ ++v+l  + +e ff+iaDlh +++++++++   +  ++++++     +la+g+dp +a+++lqs+++e  +l++
    KIR64176.1   4 ARMLTGDRPTGRLHLGhYVGSIANRVRLH-QRYESFFIIADLHMLTTRNTREDIAAVSRNAREMVTD---ILAAGVDPARATFYLQSAIPEVGDLNT 96 
                   5899*************************.*************************************...*************************** PP

                   HHHHHHTTCBHHHHHHHHHCCHHCSSSC--BHHHHHHHHHHHHHHHHTCHSEEEEEGGGHHHHHHHHHHHHHHHHH..STTSS-EEEEET..-BBST CS
  tRNA-synt_1b 102 llrdlgklgslnrmlqfksvkkrleegegislgeftYplLqaaDilllkadlvpgGsDQkqnielgrdlarrfnkk..evfkkpegltvp..lltgl 194
                   ll++l+++ +l+r+++ k++ + + + e++++g++ Yp+LqaaDil++k ++vp+G+D+  ++e++r++arrfn+   evf+ pe++  +   l+g+
    KIR64176.1  97 LLQNLVTVPRLERVPSLKDMARAAGK-EEMPYGLLGYPVLQAADILCVKGQVVPVGKDNAAHVEVTREIARRFNHLygEVFPVPETIAAEtpSLVGT 192
                   *******************5555555.89***********************************************************9988***** PP

                   TSSSBTTCETTCGC-BTTCCHHHHHHHHHHCHCSTTCSHHHHHHHHHTHHHCHHHHHHHHCCSEEESSHHHHHHHHHCCCCHHHHHHHHHHHHHHHH CS
  tRNA-synt_1b 195 dGekKmSKSagnsaIfLddekesvkkkiqkavtdsdeevekllklktelsnelierleavsgkkpkreaeellaeevtklvhggdlkkalaealnel 291
                   dG +KmSKS gn +I L+ + ++v+  +  ++td+++ v+ + ++ +e ++ ++ +++ ++      ++ +l+++++ ++v++ ++k++la aln++
    KIR64176.1 193 DGRRKMSKSLGN-TISLSADAATVRRAVMGMYTDPNR-VRADVPGTVEGNP-VFAYHDVFNPDRA--QVADLKERYRAGRVGDVEVKEQLAVALNRF 284
                   ************.************************.*************.*******999998..9***************************99 PP

                   H CS
  tRNA-synt_1b 292 l 292
                   l
    KIR64176.1 285 L 285
                   8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2733.97
//
Query:       KIR64177.1  [L=435]
Description: hypothetical protein TK50_00020 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-05   25.5   0.0       0.53   10.5   0.0    4.1  4  FixG_C       IG-like fold at C-terminal of FixG, putative oxi
    2.1e-05   24.6   0.0    6.4e-05   23.1   0.0    1.8  1  fn3_6        Fibronectin type-III domain
  ------ inclusion threshold ------
      0.034   14.4   0.1       0.12   12.7   0.1    1.9  1  Cohesin      Cohesin domain
      0.059   12.5   0.7        4.4    6.4   0.1    2.6  2  Baseplate_J  Baseplate J-like protein
      0.084   13.1   0.4       0.46   10.7   0.1    2.3  2  ASH          Abnormal spindle-like microcephaly-assoc'd, ASPM
        0.1   13.3   3.6         33    5.2   0.0    3.8  4  fn3_5        Fn3-like domain
       0.21   11.9  11.9        3.9    7.8   4.6    4.3  2  DUF11        Domain of unknown function DUF11


Domain annotation for each model (and alignments):
>> FixG_C  IG-like fold at C-terminal of FixG, putative oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.013        33      66      84 ..       9      27 ..       3      34 .. 0.85
   2 !   10.5   0.0   0.00021      0.53      38     106 ..      25      95 ..      24     103 .. 0.78
   3 !    6.4   0.0     0.004        10      53     102 ..     148     198 ..     128     213 .. 0.67
   4 ?    1.1   0.0      0.17   4.4e+02      68     101 ..     359     392 ..     323     416 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.013
                --EEEE-TT-EEEEEEEEE CS
      FixG_C 66 ekeitvapgekrkvpvfvr 84
                +++++vapg++++vpv+vr
  KIR64177.1  9 STSVSVAPGGEVEVPVTVR 27
                579***************8 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00021
                 EEEE-SSS-EEEEEEEES-SS-EE.E.S--EEEE-TT-EEEEEEEEEE-GGG.-SSSEEEEEEEEE.EG.GG CS
      FixG_C  38 kilNktekprrytlsveglpglelagraekeitvapgekrkvpvfvrvpaea.lkkkstpitfkvt.dd.de 106
                 +++N  ++  +y++++ g pg  + +++ +++++ p+++ +v+v+ r p++a ++++  p+ ++v   + ++
  KIR64177.1  25 TVRNAGDTVEAYRFEILGVPGEWV-TVQPPTLNLYPAGSDTVTVTFRPPRSArVDAGDRPFGVRVVpAEyPD 95 
                 68999*************986555.5567*******************999955566669999986433344 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.004
                 EES-SS-EE.E.S--EEEE-TT-EEEEEEEEEE-GGG..-SSSEEEEEEEEE CS
      FixG_C  53 veglpglelagraekeitvapgekrkvpvfvrvpaea..lkkkstpitfkvt 102
                 +eg +++++a  +++++tv+ g+  + p++vr+++     ++k+ p+ ++++
  KIR64177.1 148 AEGTDQVTFAL-PAEPVTVPNGTRAETPLRVRARRLLwwGAPKEYPFAVELR 198
                 35688888855.79*******************9877543344446666664 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.17
                 EEEE-TT-EEEEEEEEEE-GGG-SSSEEEEEEEE CS
      FixG_C  68 eitvapgekrkvpvfvrvpaealkkkstpitfkv 101
                 ++tv ++++r v+  ++  +++  ++ tpi++ +
  KIR64177.1 359 TLTVTANQVRVVTYALENFRNQDYHSVTPIRVPA 392
                 4445555554444444444444333333443332 PP

>> fn3_6  Fibronectin type-III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   2.5e-08   6.4e-05       3      75 ..       6      75 ..       4      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2.5e-08
       fn3_6  3 NyPsisvaleeelkgtvtvtRtvtnVgsseatYkakveapegvkvtVePseLefsekgekksftvtvtakksa 75
                N++s sv++     g+v+v  tv+n g++ ++Y+ ++   +g  vtV+P +L++  +  + ++tvt++  +sa
  KIR64177.1  6 NLASTSVSVAP--GGEVEVPVTVRNAGDTVEAYRFEILGVPGEWVTVQPPTLNLY-PAGSDTVTVTFRPPRSA 75
                99999999855..9*****************************************.889999****9987654 PP

>> Cohesin  Cohesin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   4.5e-05      0.12       6      36 ..      10      40 ..       5      41 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.5e-05
                SEEEE-TTSEEEEEEEEESECTTEEEEEEEE CS
     Cohesin  6 dkvsakvGdtvtvpvtvsnvskkvaaaqfti 36
                ++vs+++G +v+vpvtv n+ ++v a+ f+i
  KIR64177.1 10 TSVSVAPGGEVEVPVTVRNAGDTVEAYRFEI 40
                68899*******************9999986 PP

>> Baseplate_J  Baseplate J-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.011        29      18      45 ..     145     173 ..     132     180 .. 0.83
   2 ?    6.4   0.1    0.0017       4.4      47      84 ..     378     415 ..     349     426 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.011
  Baseplate_J  18 kpAtkAsgtvtftgeag.tvIpaGtrvst 45 
                  ++A + + +vtf+  a+ +++p+Gtr++t
   KIR64177.1 145 LAAAEGTDQVTFALPAEpVTVPNGTRAET 173
                  78999999******9999********987 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0017
  Baseplate_J  47 dglsfattedtitagqgsatvkvtaeeaGaagNvpagt 84 
                  +++ ++  +   ++  g +t++v++  +G+ +N+p  t
   KIR64177.1 378 RNQDYHSVTPIRVPARGRVTLTVVCRRPGTPANAPRAT 415
                  667777777799999******************99876 PP

>> ASH  Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00018      0.46      19      81 ..      14      76 ..      11      79 .. 0.87
   2 ?   -1.9   0.0       1.6     4e+03      58      72 ..     386     400 ..     360     401 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00018
                ---EEEEEEE-EEESS-SS--EEEEEEEE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH 19 vkvGssaerlLtveNpseepaevkvskvpaaekgfsveetelevqpgesvtltvtwtPteega 81
                v+ G   e  +tv+N +++      + +  +   ++v++ +l++ p +s t+tvt+ P  + +
  KIR64177.1 14 VAPGGEVEVPVTVRNAGDTVEAYRFEILGVPGEWVTVQPPTLNLYPAGSDTVTVTFRPPRSAR 76
                7778889999********997777777777899*************************77665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.6
                 XXXXXXXXXXXXXXX CS
         ASH  58 televqpgesvtltv 72 
                 t ++v++ ++vtltv
  KIR64177.1 386 TPIRVPARGRVTLTV 400
                 457888889999988 PP

>> fn3_5  Fn3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.093   2.4e+02      58      82 ..       4      28 ..       2      39 .. 0.79
   2 ?    5.2   0.0     0.013        33      59      88 ..      48      77 ..      40     107 .. 0.88
   3 ?   -3.5   0.0       6.4   1.6e+04      72      78 ..     150     156 ..     130     172 .. 0.47
   4 ?    3.0   0.1     0.061   1.5e+02      33      78 ..     331     372 ..     318     382 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.093
       fn3_5 58 altfetskvtvpAnssktvtvtldl 82
                + ++++ +v v ++++++v vt+  
  KIR64177.1  4 SANLASTSVSVAPGGEVEVPVTVRN 28
                567788999**********999965 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.013
       fn3_5 59 ltfetskvtvpAnssktvtvtldlpsdakk 88
                +t++++++ + + +s tvtvt+ +p++a++
  KIR64177.1 48 VTVQPPTLNLYPAGSDTVTVTFRPPRSARV 77
                6899*******************9998766 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 6.4
       fn3_5  72 ssktvtv 78 
                 ++ +vt+
  KIR64177.1 150 GTDQVTF 156
                 2222222 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.061
       fn3_5  33 vlTdladkeegklilkaaspeikeaaltfetskvtvpAnssktvtv 78 
                 + ++++    gk++l  +++     +++ +++++tv An+ + vt 
  KIR64177.1 331 AERSYTV-PAGKTFLLTDFLVD---NVQGDEGTLTVTANQVRVVTY 372
                 4444443.33444445555544...899999999999999998876 PP

>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.6    0.0015       3.9       6      82 ..      10      75 ..       6     182 .. 0.73
   2 ?    2.6   0.7     0.066   1.7e+02      27      84 ..     336     410 ..     314     416 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0015
       DUF11  6 dksevrpGdtvtytltvtNtgpasa.ngvvvtDtl...........PaglayvsvsasqgtasaltsvgsLeagesatlsftvrvtrta 82
                +++ v+pG++v++ +tv+N g +   ++  +  ++                                   L + +s t+++t r++r+a
  KIR64177.1 10 TSVSVAPGGEVEVPVTVRNAGDTVEaYRFEILGVPgewvtvqpptlN-----------------------LYPAGSDTVTVTFRPPRSA 75
                56789***************965432666666655333333333330.......................4444444444444444444 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.066
       DUF11  27 pasa.ngvvvtDtlPaglayvsvsas.............qgtasaltsv...gsLeagesatlsftvrvtrtaas 84 
                 +++a ++  +tD l  ++++ +++ +             ++  + ++ +    +++a ++ tl++  r + t+a+
  KIR64177.1 336 TVPAgKTFLLTDFLVDNVQGDEGTLTvtanqvrvvtyalENFRNQDYHSvtpIRVPARGRVTLTVVCRRPGTPAN 410
                 555555667888887666666666665554555555454233333333346667799999999999988888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3259.81
//
Query:       KIR64178.1  [L=206]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-15   54.9   0.1    8.1e-15   54.1   0.1    1.4  1  GerE          Bacterial regulatory proteins, luxR family
    3.5e-05   23.4   0.0    0.00012   21.8   0.0    1.9  1  HTH_23        Homeodomain-like domain
     0.0029   17.3   4.7     0.0055   16.4   0.0    2.7  3  Sigma70_r4_2  Sigma-70, region 4
  ------ inclusion threshold ------
      0.016   15.1   0.2      0.066   13.1   0.1    1.9  2  Sigma70_ECF   ECF sigma factor
      0.024   14.8   0.1       0.24   11.6   0.0    2.6  3  HTH_28        Helix-turn-helix domain
      0.049   13.6   0.2       0.18   11.9   0.0    2.0  2  HTH_29        Winged helix-turn helix
        0.2   11.2   0.0        0.2   11.2   0.0    2.5  3  Sigma70_r4    Sigma-70, region 4


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.1   3.2e-18   8.1e-15       3      57 .]     146     200 ..     145     200 .. 0.98

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 3.2e-18
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 Ls+RE++vLrl+a+G+ + eIA++l+ Se+TVk+ +  + ++L +++r+++v +a
  KIR64178.1 146 LSSREVDVLRLVADGFETREIAAKLSYSERTVKNVVHGMTTRLHLRNRAHAVAYA 200
                 9***************************************************997 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   4.6e-08   0.00012      10      39 ..     153     182 ..     149     185 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.6e-08
      HTH_23  10 illllaeGlsvreIAreLgvsrrTvyrwlk 39 
                 +l+l+a+G  +reIA++L  s+rTv ++++
  KIR64178.1 153 VLRLVADGFETREIAAKLSYSERTVKNVVH 182
                 79************************9986 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       2.1   5.3e+03       6      19 ..      56      69 ..      54      70 .. 0.68
   2 ?    2.3   0.2     0.051   1.3e+02       3      19 ..     120     136 ..     118     137 .. 0.89
   3 !   16.4   0.0   2.1e-06    0.0055       9      45 ..     144     179 ..     141     182 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.1
                  HHHTTS-HHHHHHH CS
  Sigma70_r4_2  6 ealaeLperqreif 19
                  +al++L  +q + +
    KIR64178.1 56 QALRRLRREQNRLV 69
                  67888888776655 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.051
                   HHHHHHTTS-HHHHHHH CS
  Sigma70_r4_2   3 alrealaeLperqreif 19 
                    l ++l+++   qre++
    KIR64178.1 120 LLGRLLNQMRRLQREVL 136
                   5789***********97 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 2.1e-06
                   TTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHH CS
  Sigma70_r4_2   9 aeLperqreifllryleglsykEIAellgisegtVks 45 
                     L+ r+  ++ l   +g+ ++EIA++l  se+tVk+
    KIR64178.1 144 GGLSSREVDVLRL-VADGFETREIAAKLSYSERTVKN 179
                   5688888899999.78********************7 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.59   1.5e+03      11      38 ..     109     136 ..     101     142 .. 0.76
   2 ?   13.1   0.1   2.6e-05     0.066     142     172 ..     149     181 ..     141     193 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.59
  Sigma70_ECF  11 vkdGdaeaaeqllelvydeLrrlagskl 38 
                     G+ +  ++ll ++ +++rrl ++ l
   KIR64178.1 109 AARGEGSVPADLLGRLLNQMRRLQREVL 136
                  5567777778899999999999988766 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.6e-05
  Sigma70_ECF 142 rlvelrkl..eGlsveEiAeklgvskrtverrl 172
                  r+v++ +l  +G+   EiA+kl  s+rtv+   
   KIR64178.1 149 REVDVLRLvaDGFETREIAAKLSYSERTVKNVV 181
                  55555443339******************9765 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.64   1.6e+03       4      17 ..     104     118 ..     103     126 .. 0.77
   2 ?   11.6   0.0   9.3e-05      0.24       5      34 ..     153     182 ..     151     184 .. 0.92
   3 ?   -2.2   0.0       1.8   4.7e+03       2      12 ..     193     203 ..     192     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.64
      HTH_28   4 eiikllaaGh.svre 17 
                 e+i+ +a+G+ sv++
  KIR64178.1 104 EVILSAARGEgSVPA 118
                 799999999988876 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 9.3e-05
      HTH_28   5 iikllaaGhsvreaArelgisrrtvyrWik 34 
                 +++l+a+G   re+A++l  s+rtv+  ++
  KIR64178.1 153 VLRLVADGFETREIAAKLSYSERTVKNVVH 182
                 899**********************98775 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.8
      HTH_28   2 RleiikllaaG 12 
                 R++++ +++++
  KIR64178.1 193 RAHAVAYALRH 203
                 89999999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.6   9.3e+03      43      52 ..      57      67 ..      55      70 .. 0.59
   2 ?   11.9   0.0   6.9e-05      0.18       4      33 ..     153     181 ..     151     185 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.6
      HTH_29 43 alld.rrrsgr 52
                al++ rr++ r
  KIR64178.1 57 ALRRlRREQNR 67
                66666665554 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 6.9e-05
      HTH_29   4 allllaeGvstvsqiAkllglsrrtvyrwl 33 
                 +l+l+a+G   +++iA+ l +s+rtv +++
  KIR64178.1 153 VLRLVADGFE-TREIAAKLSYSERTVKNVV 181
                 89*******6.***************9887 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3      0.44   1.1e+03      43      50 .]      56      63 ..      54      63 .. 0.84
   2 ?   -3.3   0.2       2.7   6.8e+03       2      13 ..     125     136 ..     124     137 .. 0.64
   3 ?   11.2   0.0   7.7e-05       0.2       2      41 ..     143     181 ..     142     188 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.44
                HHHHHHHH CS
  Sigma70_r4 43 rAlrkLRk 50
                +Alr+LR+
  KIR64178.1 56 QALRRLRR 63
                8*****95 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.7
                 HHHS-HHHHHHH CS
  Sigma70_r4   2 LasLpererevl 13 
                 L+++   +revl
  KIR64178.1 125 LNQMRRLQREVL 136
                 556666677776 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 7.7e-05
                 HHHS-HHHHHHHHHHH..TTT--HHHHHHHHTS-HHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrf..geglTleEIgerlgiSrerVrqie 41 
                 L  L+ re +vl+l+   +      EI+++l  S+ +V+   
  KIR64178.1 143 LGGLSSREVDVLRLVAdgF---ETREIAAKLSYSERTVKNVV 181
                 7889**********98544...569*************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1380.22
//
Query:       KIR64179.1  [L=1016]
Description: hypothetical protein TK50_00030 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-38  128.9  26.4    4.1e-07   29.8   0.0   10.4 10  PD40             WD40-like Beta Propeller Repeat
    2.7e-12   46.8  20.9    3.2e-10   40.2   3.7    3.2  2  DUF11            Domain of unknown function DUF11
    1.9e-08   34.5  18.0    2.3e-05   24.6   0.6    4.4  5  NPCBM_assoc      NPCBM-associated, NEW3 domain of alpha-galac
    1.9e-07   30.1   0.0      0.012   14.4   0.0    6.1  7  DPPIV_N          Dipeptidyl peptidase IV (DPP IV) N-terminal 
    5.2e-06   26.6   0.0     0.0043   17.3   0.0    2.6  2  CARDB            CARDB
     0.0013   18.5   0.9      0.086   12.7   0.0    2.7  2  DUF824           Salmonella repeat of unknown function (DUF82
  ------ inclusion threshold ------
      0.017   15.1   3.6        7.2    6.7   0.0    4.7  5  Big_1            Bacterial Ig-like domain (group 1)
      0.028   13.1   0.0       0.25   10.0   0.0    2.4  3  Pectate_lyase22  Oligogalacturonate lyase
       0.16   10.7   0.0        3.3    6.4   0.0    2.0  2  BatD             Oxygen tolerance
       0.57   10.4   8.9         13    6.1   2.0    3.8  2  Big_3_5          Bacterial Ig-like domain (group 3)
        1.8    8.9   6.0         27    5.2   0.1    4.0  4  Invasin_D3       Invasin, domain 3


Domain annotation for each model (and alignments):
>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.33   5.4e+02      17      37 ..      86     106 ..      85     107 .. 0.73
   2 !   18.6   0.0   7.8e-07    0.0013      12      38 .]     126     154 ..     124     154 .. 0.91
   3 !   29.8   0.0   2.5e-10   4.1e-07       1      36 [.     162     197 ..     162     199 .. 0.90
   4 ?    3.9   0.0     0.033        54       3      19 ..     209     225 ..     207     225 .. 0.85
   5 !   24.5   0.1   1.1e-08   1.8e-05      10      32 ..     264     287 ..     256     297 .. 0.83
   6 !    8.8   0.2   0.00098       1.6      14      33 ..     394     414 ..     384     421 .. 0.79
   7 !   17.0   0.1   2.6e-06    0.0042      11      34 ..     443     465 ..     435     466 .. 0.88
   8 !   13.9   0.2   2.3e-05     0.038      10      24 ..     491     505 ..     486     521 .. 0.84
   9 !   14.5   0.3   1.6e-05     0.025       9      25 ..     544     560 ..     543     562 .. 0.93
  10 !    6.6   0.1    0.0046       7.5      15      30 ..     607     622 ..     604     628 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.33
                 -TTSSEEEEEEECT.TCEEEE CS
        PD40  17 SPDGkrlaFsSdRgsGkpdIy 37 
                 S  G   +++S+Rgs   +++
  KIR64179.1  86 SATGDVVVWVSRRGSELAQLW 106
                 7779999******94444455 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 7.8e-07
                 EEEEE-TTSSEEEEEEECT..TCEE.EEE CS
        PD40  12 gaPsfSPDGkrlaFsSdRg.sGkpd.Iyv 38 
                 gaPs+SPDG+r aF  +R+  G++  I+v
  KIR64179.1 126 GAPSVSPDGTRVAFEQTREgVGSWHdIFV 154
                 79*****************9888888887 PP

  == domain 3  score: 29.8 bits;  conditional E-value: 2.5e-10
                 EEE--SSSS.EEEEEE-TTSSEEEEEEECT.TCEEE CS
        PD40   1 lkrltntpgnegaPsfSPDGkrlaFsSdRgsGkpdI 36 
                 l+++t ++ ++  P++SPDG++laF ++ + G p++
  KIR64179.1 162 LRQVTDGTNDNRRPTWSPDGTTLAFERRDDAGVPQV 197
                 689************************955888886 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.033
                 E--SSSS.EEEEEE-TT CS
        PD40   3 rltntpgnegaPsfSPD 19 
                  lt  p+  g+P+++PD
  KIR64179.1 209 ALTARPEGAGEPAWDPD 225
                 678888889*******9 PP

  == domain 5  score: 24.5 bits;  conditional E-value: 1.1e-08
                 .EEEEEE-TTSSEEEEEEECT..T CS
        PD40  10 negaPsfSPDGkrlaFsSdRg.sG 32 
                 + + Ps+SPDG++laF S+ + +G
  KIR64179.1 264 DSHQPSWSPDGTTLAFLSRTTdDG 287
                 5789***************88855 PP

  == domain 6  score: 8.8 bits;  conditional E-value: 0.00098
                 EEE-TTSSEEEEEEECT..TC CS
        PD40  14 PsfSPDGkrlaFsSdRg.sGk 33 
                 P +SPDG+r++  ++ +  G+
  KIR64179.1 394 PDYSPDGRRIVVNRFETvGGN 414
                 779********9999886444 PP

  == domain 7  score: 17.0 bits;  conditional E-value: 2.6e-06
                 EEEEEE-TTSSEEEEEEECT.TCE CS
        PD40  11 egaPsfSPDGkrlaFsSdRgsGkp 34 
                 e++P +SPDG+r a++  ++ G+p
  KIR64179.1 443 ETDPVWSPDGTRVAYALAGP-GGP 465
                 89*************98777.765 PP

  == domain 8  score: 13.9 bits;  conditional E-value: 2.3e-05
                 .EEEEEE-TTSSEEE CS
        PD40  10 negaPsfSPDGkrla 24 
                  +  P++SPDG++la
  KIR64179.1 491 SDSQPAWSPDGSTLA 505
                 5789**********8 PP

  == domain 9  score: 14.5 bits;  conditional E-value: 1.6e-05
                 S.EEEEEE-TTSSEEEE CS
        PD40   9 gnegaPsfSPDGkrlaF 25 
                 g +++PsfSPDG r+aF
  KIR64179.1 544 GADYGPSFSPDGGRIAF 560
                 5699************9 PP

  == domain 10  score: 6.6 bits;  conditional E-value: 0.0046
                 EE-TTSSEEEEEEECT CS
        PD40  15 sfSPDGkrlaFsSdRg 30 
                 ++SPDG rla  S+R 
  KIR64179.1 607 AWSPDGHRLALNSRRY 622
                 8********9888885 PP

>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   3.9   5.6e-06    0.0091       8      56 ..     672     720 ..     658     798 .. 0.76
   2 !   40.2   3.7     2e-13   3.2e-10       2      85 ..     812     893 ..     811     899 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.6e-06
       DUF11   8 sevrpGdtvtytltvtNtgpasangvvvtDtlPaglayvsvsasqgtas 56 
                 ++vr G+ +t tltvt +gp++a++v++   +P g+++       g+++
  KIR64179.1 672 APVRVGERTTLTLTVTDRGPTPAANVRLDLRVPDGVRATALEPEVGSCQ 720
                 39******************************99999877666644444 PP

  == domain 2  score: 40.2 bits;  conditional E-value: 2e-13
       DUF11   2 tKtvdksevrpGdtvtytltvtNtgpasangvvvtDtlPaglayvsvsasqgtasaltsv.gsLeagesatlsftvrvtrtaasg 85 
                 t tvd++++  G+tvt+t tv+Ntg+++a+g+++t  lPag+   s  a+   +sa+++  ++L++g+ + l+f + + ++++++
  KIR64179.1 812 TVTVDPVPAYVGGTVTVTYTVRNTGGRPATGIRITPALPAGVPVRSRPAG---CSATSCPvPDLAPGAGRSLEFVLAPGAATSTT 893
                 569***************************************95555555...77777768**************9999888876 PP

>> NPCBM_assoc  NPCBM-associated, NEW3 domain of alpha-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.6   1.4e-08   2.3e-05       3      49 ..     676     723 ..     674     757 .. 0.88
   2 ?   -1.5   0.4       1.9   3.1e+03      30      60 ..     751     778 ..     732     787 .. 0.62
   3 !   19.0   2.1   7.5e-07    0.0012       4      73 ..     823     895 ..     820     899 .. 0.82
   4 ?   -3.6   0.1       8.8   1.4e+04      42      65 ..     934     957 ..     930     960 .. 0.76
   5 ?   -1.5   0.0       1.9   3.1e+03      52      68 ..     994    1010 ..     986    1011 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.4e-08
  NPCBM_assoc   3 pGetvtltltvtndgtaaatnvslslslPeGWtvvevspasaa.slap 49 
                   Ge++tltltvt+ g ++a nv+l+l++P+G ++++ +p+ ++ +lap
   KIR64179.1 676 VGERTTLTLTVTDRGPTPAANVRLDLRVPDGVRATALEPEVGScQLAP 723
                  69********************************99999987776665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.9
  NPCBM_assoc  30 lPeGWtvvevspasaaslapGetveatvkVt 60 
                   P +Wt   v + +a++ + + t+++ v+V 
   KIR64179.1 751 YPLEWT---VGGWTADARPSDNTASVPVTVV 778
                  477777...5555555555555555555554 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 7.5e-07
  NPCBM_assoc   4 GetvtltltvtndgtaaatnvslslslPeGWtvve....vspasaa..slapGetveatvkVtppagaaaGdyevt 73 
                  G tvt+t tv n+g+++at+++++  lP+G  v++     s +s +  +lapG+  + ++ + p+a + +   +v+
   KIR64179.1 823 GGTVTVTYTVRNTGGRPATGIRITPALPAGVPVRSrpagCSATSCPvpDLAPGAGRSLEFVLAPGAATST---TVR 895
                  889****************************96542222566776678****************998875...455 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 8.8
  NPCBM_assoc  42 asaaslapGetveatvkVtppaga 65 
                   ++++ +pG  v+  ++V   a a
   KIR64179.1 934 VRGTDFPPGVPVRLAWDVGLTAAA 957
                  556688999999999999777666 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 1.9
  NPCBM_assoc   52 tveatvkVtppagaaaG 68  
                   tv+++++V  pa+  +G
   KIR64179.1  994 TVRTDFRVILPAQQPPG 1010
                   89**********98887 PP

>> DPPIV_N  Dipeptidyl peptidase IV (DPP IV) N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.6   9.7e+02     109     122 ..     131     144 ..     127     159 .. 0.88
   2 !   14.4   0.0   7.6e-06     0.012     107     131 ..     176     200 ..     170     207 .. 0.90
   3 ?    1.2   0.0     0.078   1.3e+02     107     118 ..     269     280 ..     264     287 .. 0.81
   4 ?    2.1   0.0      0.04        65      48      59 ..     446     457 ..     419     461 .. 0.75
   5 ?    0.6   0.0      0.12   1.9e+02      46      61 ..     493     508 ..     468     512 .. 0.70
   6 ?   -1.1   0.0      0.38   6.2e+02      48      61 ..     549     562 ..     517     566 .. 0.68
   7 ?   -0.7   0.0      0.28   4.6e+02     106     116 ..     606     616 ..     601     621 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.6
                 -TTSSEEEEEEEEC CS
     DPPIV_N 109 spdgsrlaylrfde 122
                 spdg+r+a+++++e
  KIR64179.1 131 SPDGTRVAFEQTRE 144
                 89999999999877 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 7.6e-06
                 EE-TTSSEEEEEEEECTTS-EEEEE CS
     DPPIV_N 107 wWspdgsrlaylrfdeseVpeitlp 131
                  Wspdg+ la++r d+ +Vp+++++
  KIR64179.1 176 TWSPDGTTLAFERRDDAGVPQVHRV 200
                 6*********************986 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.078
                 EE-TTSSEEEEE CS
     DPPIV_N 107 wWspdgsrlayl 118
                  Wspdg+ la+l
  KIR64179.1 269 SWSPDGTTLAFL 280
                 599999999987 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.04
                 EEEESSTTEEEE CS
     DPPIV_N  48 akwSPagdklaf 59 
                 + wSP+g+++a+
  KIR64179.1 446 PVWSPDGTRVAY 457
                 555555555555 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.12
                 SEEEEESSTTEEEEEE CS
     DPPIV_N  46 qlakwSPagdklafvr 61 
                 + + wSP+g  la vr
  KIR64179.1 493 SQPAWSPDGSTLALVR 508
                 4455555555555554 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 0.38
                 EEEESSTTEEEEEE CS
     DPPIV_N  48 akwSPagdklafvr 61 
                 + +SP+g ++af r
  KIR64179.1 549 PSFSPDGGRIAFGR 562
                 44555555555544 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 0.28
                 EEE-TTSSEEE CS
     DPPIV_N 106 vwWspdgsrla 116
                 v+Wspdg rla
  KIR64179.1 606 VAWSPDGHRLA 616
                 78888888887 PP

>> CARDB  CARDB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0059       9.6       3      49 ..     662     708 ..     660     758 .. 0.71
   2 !   17.3   0.0   2.6e-06    0.0043       4      78 ..     809     892 ..     806     907 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0059
                 -EEE.EEEC-SEEETTSEEEEEEEEEE-SSS-EEEEEEEEEETTEEE CS
       CARDB   3 DLtvtntlnpseafvgeentitvtvkNqGtaasgatkvalyldgelv 49 
                 DL  +++ +p+++ vge  t+t+tv+  G   + +++++l + + + 
  KIR64179.1 662 DLATDVAEPPAPVRVGERTTLTLTVTDRGPTPAANVRLDLRVPDGVR 708
                 788888999******************************99976664 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2.6e-06
                 EEE.EEEC-SEEETTSEEEEEEEEEE-SSS-EEEEEEEEEE.TTEEE.........EEEEESEE-CTEEEEEEEEEE-S-S-CEE CS
       CARDB   4 LtvtntlnpseafvgeentitvtvkNqGtaasgatkvalyl.dgelv.........gtvtvpsLaagesttvsftwtteategev 78 
                 L +t+t+ p +a+vg ++t+t+tv+N+G   ++ ++++  l  g  v         ++ +vp La+g+ ++ +f   +  ++ ++
  KIR64179.1 809 LDITVTVDPVPAYVGGTVTVTYTVRNTGGRPATGIRITPALpAGVPVrsrpagcsaTSCPVPDLAPGAGRSLEFVLAPG-AATST 892
                 66777**************************999998766524555567777777777788999999999988888887.33333 PP

>> DUF824  Salmonella repeat of unknown function (DUF824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   5.3e-05     0.086       8      41 ..     673     706 ..     671     708 .. 0.87
   2 ?    3.4   0.2     0.042        68       9      30 ..     820     841 ..     814     846 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.3e-05
      DUF824   8 kaKkGEsipltitvkDasGnPvpnapftltRgdg 41 
                  + +GE  +lt tv+D   +P++n+   l+  dg
  KIR64179.1 673 PVRVGERTTLTLTVTDRGPTPAANVRLDLRVPDG 706
                 589**********************988876665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.042
      DUF824   9 aKkGEsipltitvkDasGnPvp 30 
                 a +G ++++t tv++  G P+ 
  KIR64179.1 820 AYVGGTVTVTYTVRNTGGRPAT 841
                 56999*************9975 PP

>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.6   4.3e+03       5      19 ..     517     531 ..     516     532 .. 0.88
   2 ?    6.7   0.0    0.0044       7.2       6      35 ..     679     708 ..     677     715 .. 0.87
   3 ?   -0.8   0.0      0.96   1.6e+03      48      61 ..     739     752 ..     738     754 .. 0.86
   4 ?    5.0   0.1     0.015        25       6      32 ..     825     851 ..     823     860 .. 0.86
   5 ?   -1.6   0.0       1.8   2.9e+03       1      15 [.     964     978 ..     941     981 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.6
       Big_1   5 dtntltatvkDangn 19 
                 d++++t+ ++D +g+
  KIR64179.1 517 DSHVWTVDARDGSGQ 531
                 89999******9996 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0044
       Big_1   6 tntltatvkDangnpvagatVtfsvsggal 35 
                  +tlt tv+D+  +p a++   ++v++g+ 
  KIR64179.1 679 RTTLTLTVTDRGPTPAANVRLDLRVPDGVR 708
                 68*****************99999998765 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.96
       Big_1  48 atvtltstkagtvt 61 
                 ++v+lt+ +agt+ 
  KIR64179.1 739 VRVELTGVTAGTYP 752
                 789*********86 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.015
       Big_1   6 tntltatvkDangnpvagatVtfsvsg 32 
                 t+t+t tv++  g p  g+ +t   ++
  KIR64179.1 825 TVTVTYTVRNTGGRPATGIRITPALPA 851
                 79*****************99866665 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 1.8
       Big_1   1 AdGvdtntltatvkD 15 
                 AdG+ +++l ++ +D
  KIR64179.1 964 ADGTFAAQLLVVPRD 978
                 556666666666555 PP

>> Pectate_lyase22  Oligogalacturonate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.57   9.3e+02     218     254 ..     152     186 ..     111     208 .. 0.73
   2 ?   -1.4   0.0      0.43     7e+02     175     258 ..     202     283 ..     192     293 .. 0.66
   3 ?   10.0   0.0   0.00015      0.25     188     267 ..     389     470 ..     385     482 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.57
  Pectate_lyase22 218 mwlinedgsnlrkvkehaegescthevwvpdgsalay 254
                      ++++  dg+ lr+v + ++ +      w pdg++la+
       KIR64179.1 152 IFVVGVDGTGLRQVTDGTNDN--RRPTWSPDGTTLAF 186
                      567788888888887766544..46678888888876 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.43
  Pectate_lyase22 175 lktgeaevilkenqwlghpiyrpfdds.tvafchegphdlvdarmwlinedgsnlrkvkehaegescthevwvpdgsalayvsyl 258
                      ++ g ++++    +  g p + p      +a+    p+d    ++ lin  g + r +   a+     +  w pdg++la++s  
       KIR64179.1 202 VDGGPVTALTARPEGAGEPAWDPDPAHdRIAY-TAAPQDPDARQIHLINTVGGDDRLL--LAPSWDSHQPSWSPDGTTLAFLSRT 283
                      55555555555556666666666443303343.3567776555578888888888876..46777777889********999865 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00015
  Pectate_lyase22 188 qwlghpiyrpfddstvafchegphdlvdarmwlinedgsnlrkvkehaeg..escthevwvpdgsalayvsylkgsterviy 267
                       w   p y p     v    e       +r+w+++ dg n r +     g  +  t  vw pdg+ +ay     g   rv++
       KIR64179.1 389 PWTARPDYSPDGRRIVVNRFETVGGNRVSRLWIVDADGGNPRLLPLAGRGaaDVETDPVWSPDGTRVAYALAGPGGPSRVVV 470
                      58888888888888888888888888889***********999877666621567999***********8777777777664 PP

>> BatD  Oxygen tolerance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.047        76     275     309 ..     665     700 ..     654     714 .. 0.62
   2 ?    6.4   0.0     0.002       3.3     104     153 ..     769     833 ..     755     849 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.047
        BatD 275 aslskde..lkvgepltltvtisGtGNlkllqlPeln 309
                  ++   +  ++vge  tlt+t++ +G  + + +  l+
  KIR64179.1 665 TDVAEPPapVRVGERTTLTLTVTDRG-PTPAANVRLD 700
                 44433334577777777777777777.5555555554 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.002
        BatD 104 ksnpitikVlk...............seasqsssaisdedlflraevskksvYvqeqvlvtlkly 153
                  ++++ ++V++               + +    ++  +  l ++++v+   +Yv+  v+vt+ + 
  KIR64179.1 769 NTASVPVTVVPvppptttpppatptpTPTGPPPTSPPAAGLDITVTVDPVPAYVGGTVTVTYTVR 833
                 68899999999999888777666554223333333333449999999999999999999999875 PP

>> Big_3_5  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.0    0.0078        13       1      32 [.     671     701 ..     671     782 .. 0.56
   2 ?    5.7   0.7      0.01        17       2      26 ..     818     842 ..     801     876 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0078
                 -S-EETTSEEEEEEE--CCCCTTS--EEEEEE CS
     Big_3_5   1 ptsvtagqtvtltatVtaasggtptGtVtftd 32 
                 p++v +g+ +tlt tVt+  g+tp  +V +  
  KIR64179.1 671 PAPVRVGERTTLTLTVTDR-GPTPAANVRLDL 701
                 68999*************9.999999998764 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.01
                 S-EETTSEEEEEEE--CCCCTTS-- CS
     Big_3_5   2 tsvtagqtvtltatVtaasggtptG 26 
                  ++++g tvt+t tV  ++g ++tG
  KIR64179.1 818 VPAYVGGTVTVTYTVRNTGGRPATG 842
                 4567777888888888776666766 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.1     1e+04      16      35 ..     516     532 ..     499     536 .. 0.71
   2 ?    3.6   0.5     0.052        84      63      83 ..     740     765 ..     667     778 .. 0.70
   3 ?    5.2   0.1     0.016        27      20      49 ..     824     852 ..     809     912 .. 0.69
   4 ?   -3.4   0.0       7.9   1.3e+04       8      31 ..     956     979 ..     954     983 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.1
  Invasin_D3  16 AdGkststltvtlkDangnp 35 
                 A   ++ + tv ++D +g+ 
  KIR64179.1 516 A---DSHVWTVDARDGSGQR 532
                 3...4667889999999875 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.052
  Invasin_D3  63 tatLtattagtatitptvnG.....v 83 
                  ++Lt+ tagt+ ++ tv+G      
  KIR64179.1 740 RVELTGVTAGTYPLEWTVGGwtadaR 765
                 57899999999999999999654333 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.016
  Invasin_D3  20 ststltvtlkDangnpvsgltvtfsttsag 49 
                  t t+t t++++ g p++g  +t +   ag
  KIR64179.1 824 GTVTVTYTVRNTGGRPATGIRITPALP-AG 852
                 58899**************99887765.44 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 7.9
  Invasin_D3   8 taspasivAdGkststltvtlkDa 31 
                 +a+pa  +AdG+ +++l v  +D+
  KIR64179.1 956 AANPAVPAADGTFAAQLLVVPRDQ 979
                 677888899999999888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1016 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 6434.65
//
Query:       KIR64180.1  [L=516]
Description: tail protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-35  121.3   0.0    5.8e-35  120.6   0.0    1.4  1  Phage_sheath_1   Phage tail sheath protein subtilisin-like do
    1.7e-20   72.9   0.0    2.8e-20   72.2   0.0    1.4  1  Phage_sheath_1C  Phage tail sheath C-terminal domain


Domain annotation for each model (and alignments):
>> Phage_sheath_1  Phage tail sheath protein subtilisin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6   0.0   6.5e-39   5.8e-35      11     168 .]     232     398 ..     212     398 .. 0.90

  Alignments for each domain:
  == domain 1  score: 120.6 bits;  conditional E-value: 6.5e-39
                     HHHHGTTS--SEEE-GG......GTCS-HHHHHHHHHHHHHHHHHCH-SSEEEEES-HHHHSSS.HHHHHCTTTTEEEE--EEEETTSSEEEHH. CS
  Phage_sheath_1  11 aldalegekfnlliapg......ddaednevatevqafakrsrenegldaiaviappgtttieqaaarakadnegiinvsstyaaldgpeitqy. 98 
                     +l+a+  +++ +++ap       +   d e +++ q  ++ ++e+ + d+ a+++pp+++t++q +a+++    + + ++s+yaal++p+++++ 
      KIR64180.1 232 GLEAI--DEITMVAAPDlmgayqQGVVDLEAVKAAQLALISHCEQ-MGDRMALLDPPPELTAQQVRAWRQ----DEAGYDSRYAALYYPWVKVFd 319
                     44444..4444444444444444888899999999999999****.************************....999****************** PP

                     .........HHHHHHHHHHHHSTTT--STT....-B-TTEEEESSS--HHHHHHHHHTTEB-EEEETTTEEEES--B-S CS
  Phage_sheath_1  99 .........paaawvAGlcAradveqswtarpsngevkgaldlaieltqeerdllleaGintltvdagdgvrvegditt 168
                              p++++ AGl+ r+d e++++++p+n++v+g++dl+ + t++e+dll++ G+n+++ ++g+gvrv+g++t+
      KIR64180.1 320 pstgravfmPPSGHLAGLWSRNDTERGVHKAPANEVVRGVVDLQNNVTKGEQDLLNPIGVNCIRAFPGRGVRVWGARTL 398
                     *****************************************************************************96 PP

>> Phage_sheath_1C  Phage tail sheath C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.0   3.1e-24   2.8e-20       1     102 [.     399     505 ..     399     507 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 3.1e-24
                      SS-GGGGBHHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHTTSB-S--S......TTSEEEEC.SSSSTTEEEEEEE CS
  Phage_sheath_1C   1 dkdedfkkievirtldllrddirstfkkkylgkklnnddgralvksalnaylkelqregaienfdn......ksdlevea.kntdkdrlvvkin 87 
                      ++d+++++i+v+r++++++++i   +++  +++++n+++++  ++++++a+l+e +r+ga+ + +       k+d e ++ + +d++++v++i+
       KIR64180.1 399 SSDPAWRYINVRRLFNYVEESILLGTQW--VVFEPNDQRLWGTIRRNITAFLTEEWRRGALFGATAaeafyvKCDQETNPpEVIDRGQVVCEIG 490
                      689*************************..*********************************999999999999999999************* PP

                      E-BSSSSS-EEEEEE CS
  Phage_sheath_1C  88 vkpvnsmeklyftie 102
                      + pv+++e++ f+  
       KIR64180.1 491 ICPVKPAEFVVFRLA 505
                      ***********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3665.18
//
Query:       KIR64181.1  [L=146]
Description: phage tail protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-30  104.6   0.1      4e-30  104.4   0.1    1.0  1  Phage_T4_gp19  T4-like virus tail tube protein gp19


Domain annotation for each model (and alignments):
>> Phage_T4_gp19  T4-like virus tail tube protein gp19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.1   2.2e-34     4e-30       4     133 ..      11     143 ..       9     144 .. 0.93

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 2.2e-34
                    SEEEE-TTT-EEEE--EEEEEEEEEE.....TEEE......EEEEEEEE--EEEEEE--HHHHHHHHHHHHT--SS.B---EEEEEEEE-SST.T- CS
  Phage_T4_gp19   4 rFeveidgevdaafqevsglkaetevveyreggen..rferklpgrtkyenltLkrgltsdselvkWfkkvieggv.kearknisisllneegtpl 96 
                     F+ve +g+++  +qevsgl +e + +e+++ ++      rk+pg +k +++t++rgl+++s++++W+k++  +g  ++ar+nisi l n +++++
     KIR64181.1  11 SFQVELGGIQVELVQEVSGLTVELDSIEVKSVTATgeLIIRKIPGARKAGEVTITRGLDKSSAFTDWIKETFLKGAvEAARQNISIILNNADKSET 106
                    6*****************************95555448999****************************87777765888**************** PP

                    EEEEEEEEEEEEEE-EEEES--S---EEEEEEE-SEE CS
  Phage_T4_gp19  97 vrwklinawpvkwsapdldassnevaieeleLayegf 133
                    +r++l+naw++kw++p l+a + ++a+e+++++ye++
     KIR64181.1 107 RRFDLSNAWVSKWEGPGLKAGDPTAATEKVTVVYEEI 143
                    ***********************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1034.79
//
Query:       KIR64182.1  [L=158]
Description: hypothetical protein TK50_00060 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.073   13.0   0.1       0.14   12.1   0.1    1.4  1  zinc_ribbon_4  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   7.6e-06      0.14       3      15 ..     137     149 ..     136     151 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.6e-06
  zinc_ribbon_4   3 itCpsCkakyeid 15 
                    +tCp+C++++e+d
     KIR64182.1 137 VTCPACESVFEVD 149
                    89*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1128.76
//
Query:       KIR64183.1  [L=1080]
Description: hypothetical protein TK50_00065 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1080 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      121  (0.00674884); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.38
# Mc/sec: 8504.45
//
Query:       KIR64184.1  [L=143]
Description: phage tail protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-23   82.0   0.0    3.9e-23   81.8   0.0    1.0  1  Phage_T4_gp19  T4-like virus tail tube protein gp19


Domain annotation for each model (and alignments):
>> Phage_T4_gp19  T4-like virus tail tube protein gp19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   2.2e-27   3.9e-23       2     133 ..       9     138 ..       8     139 .. 0.94

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 2.2e-27
                    SSSEEEE-TTT-EEEE--EEEEEEEEEE.....TEEE....EEEEEEEE--EEEEEE--HHHHHHHHHHHHT--SSB---EEEEEEEE-SST.T-E CS
  Phage_T4_gp19   2 afrFeveidgevdaafqevsglkaetevveyreggenrferklpgrtkyenltLkrgltsdselvkWfkkvieggvkearknisisllneegtplv 97 
                    +++F+++idg+  +  + + gl  e+e ++y+egg+n+f+++lp r  y+n+tL+r lt d++ v  + +    gv+  r +++i +l  +   lv
     KIR64184.1   9 SVHFRLQIDGIDLGDWSGCDGLGCEVELEQYQEGGNNEFVWQLPSRLRYSNVTLTRPLTRDTAKVSSYLAQLPSGVR--RGTAQIAALRPDLAMLV 102
                    689********************************************************777777777777777788..9************9999 PP

                    EEEEEEEEEEEEE-EEEES--S---EEEEEEE-SEE CS
  Phage_T4_gp19  98 rwklinawpvkwsapdldassnevaieeleLayegf 133
                    +w l+ ++ v+ws+p++d + +eva e++eLay+gf
     KIR64184.1 103 QWGLADVVLVRWSGPSFDPNRSEVASESIELAYHGF 138
                    **********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       200  (0.0111551); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1126.72
//
Query:       KIR64185.1  [L=243]
Description: peptidase M23B [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-05   25.1   0.0    2.3e-05   24.3   0.0    1.4  1  LysM          LysM domain
     0.0003   20.4   0.0     0.0048   16.5   0.0    2.1  1  Phage_P2_GpU  Phage P2 GpU


Domain annotation for each model (and alignments):
>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.6e-09   2.3e-05       2      44 .]     183     228 ..     182     228 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.6e-09
                 EE-TT--HHHHHHHC...TCHHHHHHHHCTCSSCGG--TTEEEEEE CS
        LysM   2 tVkkGDTLwsIAkry...gitveklleaNnlsspdkifpGqkLkiP 44 
                 +   GD+L+ +A r     + ++ ++eaN +++p +++pG++L +P
  KIR64185.1 183 RLVAGDSLELLAHREygdPTAWRVIAEANDIDDPVRLRPGRQLLLP 228
                 6678********9988***************************998 PP

>> Phage_P2_GpU  Phage P2 GpU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.4e-07    0.0048       1     119 [.      31     163 ..      31     164 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.4e-07
  Phage_P2_GpU   1 GdfvFelntlafqelqrstsarwaeherlggrp..alqfvGpgeetitlsgvlf...peltggreeleaLramaeagealpLv...........lGt 81 
                   G+++F++n    q+l  ++sa w  h + g+ +    +f G g  t+tl++ l+    ++++ +++++aL +++   +a               +G+
    KIR64185.1  31 GPITFMFNP---QQLALTKSASWIPHVVRGAADvgVAEFSGSGPRTLTLEVFLDatdTHSRTVQDRVDALLTCCVPTKASIAAkapsppwvkfaWGQ 124
                   677788775...9999999****999999988733589***************94443445578888888877766665433322333333333999 PP

  Phage_P2_GpU  82 .gevlgkwviesisetqsefladGaarkieftlsLkryd 119
                    ++v     + ++++t s f++dG++++ + +l+L +++
    KIR64185.1 125 fQTVSFYSYVSQVNATYSLFDPDGTPLRATCSLTLNEVS 163
                   555544446799************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1913.99
//
Query:       KIR64186.1  [L=587]
Description: hypothetical protein TK50_00080 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-08   34.0   0.6      3e-08   33.3   0.6    1.2  1  Phage_GPD  Phage late control gene D protein (GPD)
     0.0089   15.9   0.0      0.049   13.5   0.0    2.2  2  DUF2345    Uncharacterized protein conserved in bacteria (DUF


Domain annotation for each model (and alignments):
>> Phage_GPD  Phage late control gene D protein (GPD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.6   3.3e-12     3e-08      26     299 ..      59     338 ..      36     341 .. 0.74

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 3.3e-12
   Phage_GPD  26 llgqpvtvsield.dgskrv.ihGlvteaeqvgadgrlarYrltlrPwlwlltlrrdsriFqnktvpdIleavlaehgiavekrfrlersypkreycvQ 122
                  +g  vtv+++++ d+++ + + G v   e  + dg  +  +++  +  + l + ++ r+F n+++ dI+++v+a +gi+v    r++ +  ++e ++Q
  KIR64186.1  59 TIGTDVTVRVRTGrDAAPLPlFAGEVVTLE-SEYDGVGTFTTVRALDLSHRLMRGQRVRSFVNRKASDIAREVAAAAGIPV---GRIDPTPTVYETVTQ 153
                 589999999988775555445999999998.488999888999999999**************************999999...99************* PP

   Phage_GPD 123 yrESdlaFvsRLleeeGifyffehedgshtLvladassalppsaggpsiryhrqsgteae.reait..rfaearrlapgkvtlrdydykkpkadlsaea 218
                  +  d++F++ L+  ++  + +      ++  + ++ +a ++   g+ +    qs    e  e +   r + +   + + vt+r +d +  ++ ++ +a
  KIR64186.1 154 PNVNDWEFLKMLAVDNDAEVVVVD----GRFFFRRSVRAAAA--PGAGVTAE-QSPFVVEmNENLLsvRSTVTSVGQVAGVTVRGWDVRAKRPVSTEVA 245
                 *********************988....89999888888333..34444444.3333333333333003344555667777777777766666644444 PP

   Phage_GPD 219 aqpr.......aaasalevydypg....dyaskaegerlarlrlealrararrfsgesnvrg...lapGrtftlsghprkaaanreylitsvehh 299
                 ++++        +a+a++ +        d   +  +e  a + + a    a+ +++e + rg   l++G +++l++    a ++++y+it+ +h 
  KIR64186.1 246 TDASdevqigtTPAKAAQPFGAARlcvaDVPYRTVAETRAVAGAVAADVTAAFAELEVGIRGnprLRAGVPLSLQQV--GAPFEGKYTITASRHV 338
                 32322466666333333333333356566677788888888888888888888888888888888***********6..566*********9996 PP

>> DUF2345  Uncharacterized protein conserved in bacteria (DUF2345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.26   2.3e+03     102     142 ..      31      70 ..      22      75 .. 0.68
   2 !   13.5   0.0   5.5e-06     0.049      69     142 ..     508     581 ..     485     586 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.26
     DUF2345 102 tegkieisAkkeillaagga.yirleggnIelgtpGkievka 142
                 +e++ +++A  +++++ +++ ++r  ++++++gt  +++v++
  KIR64186.1  31 VEDSTNLAATATLRFRDQQSrFLR--DNGVTIGTDVTVRVRT 70 
                 466777888888888888884444..5667777777776665 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.5e-06
     DUF2345  69 agikliAakgkveiqAqs..dalellAkkdvtvtStegkieisAkkeillaaggayirleggnIelgtpGkievka 142
                 +gi+l+ a++++++   +   a+ ++++ +v++++  ++++++ +  i+l ag + ++l+g  + + +  +++++a
  KIR64186.1 508 RGIRLTTARDRLTVHLDDrrTAVVVHSDGSVEIEA-RQQVTVKGR-GITLDAGAGELTLKGRSVSVDGGTQVDIQA 581
                 68888888887666655422667789999******.569*****9.9*******************9999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3876.60
//
Query:       KIR64187.1  [L=148]
Description: baseplate protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-23   82.7   0.0    1.4e-23   82.4   0.0    1.1  1  GPW_gp25  Gene 25-like lysozyme


Domain annotation for each model (and alignments):
>> GPW_gp25  Gene 25-like lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.0   7.9e-28   1.4e-23       3      94 ..      27     116 ..      25     117 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 7.9e-28
                 HHHHHHHHHHHHHCSBTTSSTT-TT-SBGGGHHHHCS--.CHHHHHHHHHHHHHHHH-TTEEEEEEEE......CCCCTEEEEEEEEEETTCC CS
    GPW_gp25   3 lresvrrdleiLLntfpgervsvlnyGlpllallfasls.edreriareireailrfEpRirlvsveveveeededargrlrieIeatlratp 94 
                  ++++ + + ++L t+pger +++++G+++++++fa+ + +++ ria e+r+a+ r+EpRi++++v ++ + ed    g+l i++++ +r t+
  KIR64187.1  27 REREIVEAIGLILGTAPGERPMRPEFGCGVHDYVFAPADeNTAGRIAFEVRRALDRWEPRIDVTDVVINFDAED---AGVLYIDVRYSIRGTN 116
                 578899**************************************************************999999...*************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       209  (0.0116571); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1017.21
//
Query:       KIR64188.1  [L=653]
Description: baseplate J family protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-18   66.8   0.5    1.5e-15   57.1   0.1    2.2  2  Baseplate_J  Baseplate J-like protein
  ------ inclusion threshold ------
      0.016   13.8   0.1      0.025   13.1   0.1    1.2  1  T6SS_TssF    Type VI secretion system, TssF


Domain annotation for each model (and alignments):
>> Baseplate_J  Baseplate J-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0002       1.8      11      56 ..      72     125 ..      64     136 .. 0.84
   2 !   57.1   0.1   1.7e-19   1.5e-15      75     237 ..     398     571 ..     381     579 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0002
  Baseplate_J  11 levgvtRkpAtkAsgtvtftgeag....tvIpaGtrvsta.....dglsfatted 56 
                  l +gv   p t+A+g vtf  + +    +++ aGt+v t+     + + f+tt+d
   KIR64188.1  72 L-IGVRPFPPTAARGDVTFWLSGPqtqpVLLRAGTEVGTErtqtdEAVVFTTTTD 125
                  5.6888999***********99999999*********998888888889999986 PP

  == domain 2  score: 57.1 bits;  conditional E-value: 1.7e-19
  Baseplate_J  75 GaagNvpagtsllldtaiagiqsvavantkvssgGadiEsdealreRillalqepptgGnkadYkewalev.qgVtrakvlplwn..gpGtVkvvill 169
                  G +gNv+ g++  l + ++ ++ v++++    +gG+d E+ ++ r R   +l+++ ++ ++ dY+  a+++ +   r+ +lp  +  ++G V+++++ 
   KIR64188.1 398 GHSGNVARGALAVLRSSMPYVSRVENRAPA--TGGVDGETVAEARLRGPVQLRAQDRAVTARDYELLARQAcPAAARVRCLPAGDgsAAGGVRLLVVP 493
                  99**************************99..***************************************************996667889999988 PP

  Baseplate_J 170 d.....ng......glPtaellakVqayiseglrPvtaevtvlaptekavnitatlllaegtdseavkqaveaaiqayf 237
                  +     +g       +P + +la++++++ e++rP++a++ v +p  + v++ a+l+ +++t+ ++++++++a +  y+
   KIR64188.1 494 EavadeEGrlhfedLVPPDGMLATIAEHL-EARRPIGARLVVEPPFYQGVTVVARLVPRPDTAVAQLRAEATATLYRYL 571
                  6555552266666689*************.**************************9***********99999998887 PP

>> T6SS_TssF  Type VI secretion system, TssF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.8e-06     0.025      49     153 ..      43     143 ..      30     155 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.8e-06
   T6SS_TssF  49 LlegfAflaaRiqqklddefpelteaLlevlyPhylapiPSmavvqlepdpeegslaegftvprgtelesrpsegegtrcrFrtaqdvtLwPleiaear 147
                 L e fA ++ ++  +l     +   a l+++      p+++   v++ ++   g  ++++ +++gte+ ++ + ++ +++ F+t+ d+ ++P+e++ +r
  KIR64188.1  43 LVETFAHMVDQLLYRLNRVPEKNYLAFLDLIGVRPFPPTAARGDVTFWLS---GPQTQPVLLRAGTEVGTERT-QTDEAVVFTTTTDLAVVPCELTRLR 137
                 56666666666666666655555666666665555556666666777666...77889**************7.67899*****************999 PP

   T6SS_TssF 148 ltsapa 153
                  ++a+ 
  KIR64188.1 138 SHPAEG 143
                 887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4410.07
//
Query:       KIR64189.1  [L=189]
Description: hypothetical protein TK50_00100 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-11   42.0   0.0    9.9e-11   41.7   0.0    1.1  1  Tail_P2_I       Phage tail protein (Tail_P2_I)
  ------ inclusion threshold ------
      0.069   12.0   0.1      0.092   11.6   0.1    1.1  1  Dak1            Dak1 domain
       0.21   11.1   1.9       0.32   10.5   0.1    2.1  2  Sirohm_synth_M  Sirohaem biosynthesis protein central


Domain annotation for each model (and alignments):
>> Tail_P2_I  Phage tail protein (Tail_P2_I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   1.7e-14   9.9e-11       8     135 ..      27     168 ..      22     169 .. 0.82

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1.7e-14
   Tail_P2_I   8 lerala.alaarldklpvpirdlw...npdtcpaelLpwLAwelsvdgWdeawseeakRavikeaielhrlkGTpaavrrvle.algfgveitE..... 96 
                 l ++l  a  + ++ +++++ +lw   +p+  p ++++wL+ ++   g  ++   + +R+v++ a+  hr +GT+aa+ + ++ a g+ +ei+E     
  KIR64189.1  27 LAQRLTgAYDQVIAPVHATLDNLWayfDPALAPPDFVDWLGGWVAAGG-PPDGAGDDRRRVVAGAVGRHRVRGTAAALAEEVRlATGIAAEIVEsggta 124
                 555555444555555666766666666******************988.78888999**************************99999*********** PP

   Tail_P2_I  97 Wwey..r.kpytfkvelevs.eq.giteeqaaelrrlvaaakpa 135
                 W ++  +  p++ +  l+v+ +  +  ++ aa+lr++++a +pa
  KIR64189.1 125 WSATpgGaLPGSPEPALTVRiRVaEPGPALAARLRAVIEANRPA 168
                 ****86489999999999985443445566666***9*999987 PP

>> Dak1  Dak1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.5e-05     0.092     128     190 ..      81     143 ..      73     152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.5e-05
                 CSSSB--THHHHHHHHHHHHHHHT--HHHHHHHHHHHHTTEEEEEEEEE--B-TTTSSBSS-- CS
        Dak1 128 kagrRGvagtvlveKiaGaaAeegasLeevaelaekvaenlrsigvalsactvpgagkpsfel 190
                  ++rR vag v  +++ G aA+  ++++  + +a +++e+  +   a     +pg+ +p  ++
  KIR64189.1  81 DDRRRVVAGAVGRHRVRGTAAALAEEVRLATGIAAEIVESGGTAWSATPGGALPGSPEPALTV 143
                 678*****************************************9999999999999988766 PP

>> Sirohm_synth_M  Sirohaem biosynthesis protein central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2       0.2   1.2e+03      15      22 ..     139     146 ..     139     146 .. 0.96
   2 ?   10.5   0.1   5.4e-05      0.32      14      27 ..     151     164 ..     151     165 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.2
  Sirohm_synth_M  15 PrLAaliR 22 
                     P+L+ +iR
      KIR64189.1 139 PALTVRIR 146
                     99*****9 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 5.4e-05
  Sirohm_synth_M  14 sPrLAaliRreier 27 
                     +P+LAa++R  ie+
      KIR64189.1 151 GPALAARLRAVIEA 164
                     8***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1345.97
//
Query:       KIR64190.1  [L=246]
Description: hypothetical protein TK50_00110 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-12   46.3  12.4    8.9e-12   45.7  12.4    1.3  1  BTAD         Bacterial transcriptional activator domain
    3.8e-08   33.3   0.0    6.4e-08   32.6   0.0    1.4  1  Trans_reg_C  Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
          4    8.5  15.3       0.45   11.5   8.1    3.0  3  TPR_14       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7  12.4   1.5e-15   8.9e-12       2     132 ..     103     232 ..     102     242 .. 0.94

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 1.5e-15
                 HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHH CS
        BTAD   2 DlarfealvaagraalaagdpeeaaelleaAlalwrGpaladleagewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlhr 100
                 D+ +fea+ a +r+a   gd ++   +l+ Al+ + G++l +    ew+ a rer+++++ ea + la+ el  Gra++a+  ++++++++ ++++ +r
  KIR64190.1 103 DVLAFEAALAVARHAGPTGDATTVTGALRGALDHYGGDLLPEDGTAEWVVADRERYRARATEAAALLARVELDRGRARAAVLAARRALELDGYHDDGWR 201
                 999*************************************997779***************************************************** PP

                 HHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS- CS
        BTAD 101 qlmrAlarsGrqaeALevYerlrrlLaeeLgv 132
                 +l +A +r G+ a+  +  +++ r+L+  Lgv
  KIR64190.1 202 LLVAAQRRAGDVAASRRSQQTYERVLRS-LGV 232
                 **************99999999999974.676 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.1e-11   6.4e-08       8      60 ..      23      76 ..      20      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.1e-11
                 HHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTS.TSHTHHHHHHHHHHHHHHHTT CS
  Trans_reg_C  8 pkefklLelLlenpgrvvsreeLleevwgede.dvddrtvdvhisrLRkkLedd 60
                 p+ + l+++L++++gr+v re+++ ++w+e +   + + ++v +s+LR  Le+ 
   KIR64190.1 23 PRVRTLMRFLAAEAGRPVHRERIMAALWPELPeRAAVNNLHVSVSTLRTFLEPG 76
                 78899*************************9988999**************984 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1         1     6e+03      15      29 ..     121     135 ..     106     142 .. 0.47
   2 ?   11.5   8.1   7.5e-05      0.45       2      42 ..     164     204 ..     163     206 .. 0.94
   3 ?    4.3   0.3     0.015        92       3      27 ..     199     226 ..     197     241 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1
      TPR_14  15 GdpdeAiallrrala 29 
                 Gd  +   +lr al+
  KIR64190.1 121 GDATTVTGALRGALD 135
                 444444455555555 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.5e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 ea ++la+++l +G+ ++A+ ++rral+l+  +++ w+ll+
  KIR64190.1 164 EAAALLARVELDRGRARAAVLAARRALELDGYHDDGWRLLV 204
                 78899********************************9997 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.015
      TPR_14   3 allalaeallalGdpde...Aiallrra 27 
                  +++l++a +++Gd ++   + + ++r+
  KIR64190.1 199 GWRLLVAAQRRAGDVAAsrrSQQTYERV 226
                 6999**********77733355555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1767.00
//
Query:       KIR64191.1  [L=324]
Description: AraC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-26   91.2   0.0    8.2e-26   90.8   0.0    1.2  1  DJ-1_PfpI     DJ-1/PfpI family
      2e-21   76.0   5.0    4.4e-21   74.9   5.0    1.6  1  HTH_18        Helix-turn-helix domain
    9.3e-09   35.2   0.0     0.0049   16.9   0.0    2.5  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
  ------ inclusion threshold ------
      0.014   14.8   3.7        1.5    8.3   0.9    2.6  2  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
      0.057   13.6   0.4          1    9.6   0.0    2.7  2  DUF4031       Protein of unknown function (DUF4031)


Domain annotation for each model (and alignments):
>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.0   2.3e-29   8.2e-26       3     165 .]       6     176 ..       4     176 .. 0.83

  Alignments for each domain:
  == domain 1  score: 90.8 bits;  conditional E-value: 2.3e-29
                 EEEEEETTBEHHHHHHHHHHHH...H....TTEEEEEEESSTSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT CS
   DJ-1_PfpI   3 vlvlladgvedvElivpvdvlk...r....agikvdvvsvdkeevkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaekg 94 
                 vl++  +g+e +++    + l    r      +++++++++++++++ +Gl++++ ++l+  +++  D+lv+ GG    +r ++n+ v+  v++ a  +
  KIR64191.1   6 VLIVGYEGAELIDIACVSSSLDianRigadPPYRIVLATPGGRPITCDSGLRLCAQETLER-CTGPVDTLVVSGGLG-HTRAAANPLVTGHVRRLAALA 102
                 5555557777777665555555332344334589999***********************6.6778*********99.999999*************** PP

                 -EEEEETTTHHHHHHTTTTTTSEE--SGGGHHHH.HHTTSEE-SS..SEEEETTEEEESSGGGHHHHHHHHHHH CS
   DJ-1_PfpI  95 klvaaICagpqlLaaagvlkgrrvTsypavkdkl.ekagakyvdk..rvvvdgnlvTsrgpgaaiefalellee 165
                 ++va++C+g+++La+ag+l +rr+Ts++ + d+l +     +vd    +++dgn+ Ts g+++a++++l+++ee
  KIR64191.1 103 RRVASVCTGATVLAEAGLLANRRATSHWMYADQLaRSYPDVTVDPepIYIRDGNVATSGGVTSALDLTLAFVEE 176
                 **********************************42222233444789***********************985 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   5.0   1.2e-24   4.4e-21       1      80 [.     237     315 ..     237     316 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 1.2e-24
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 la+ +gvs+r+L+rlf ++ g tp++y+rr R e+A +lL+ +t+l++a++A ++GF+++ ++++af +++ +tPs++r+
  KIR64191.1 237 LARLAGVSERQLSRLFLAHAGSTPAQYVRRARTEAAAHLLT-STALPLAAVARRCGFGSTESLRQAFLAHYAVTPSRFRA 315
                 89************************************997.6***********************************96 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.9e-06      0.01       4      41 ..     227     264 ..     224     265 .. 0.88
   2 !   16.9   0.0   1.4e-06    0.0049       6      41 ..     278     314 ..     276     315 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.9e-06
                 CCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   4 nlstnltiediAdelgfSrsyFsrlFkketGmtPsqyr 41 
                 +l+++l  + +A  +g+S++++srlF +  G tP qy 
  KIR64191.1 227 HLADDLGTATLARLAGVSERQLSRLFLAHAGSTPAQYV 264
                 66677777899**************************7 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.4e-06
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                 st l ++ +A  +gf S   ++++F + + +tPs +r
  KIR64191.1 278 STALPLAAVARRCGFgSTESLRQAFLAHYAVTPSRFR 314
                 78899******************************98 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.9   0.00042       1.5      14      51 ..     218     255 ..     208     256 .. 0.87
   2 ?    6.5   0.1    0.0015       5.5      18      38 ..     270     291 ..     269     295 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00042
  HTH_Tnp_ISL3  14 lrleayilelllesrsvkavArqlgvSwtTVwrildry 51 
                   +r++  +++ l ++   ++ Ar+ gvS++ + r + ++
    KIR64191.1 218 RRARSHVATHLADDLGTATLARLAGVSERQLSRLFLAH 255
                   48899999999999999******************987 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0015
  HTH_Tnp_ISL3  18 ayilellles.rsvkavArqlg 38 
                   +++++ll+++  + +avAr++g
    KIR64191.1 270 EAAAHLLTSTaLPLAAVARRCG 291
                   5799****************98 PP

>> DUF4031  Protein of unknown function (DUF4031)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.14   5.2e+02       9      39 ..     219     247 ..     212     255 .. 0.60
   2 ?    9.6   0.0   0.00029         1      10      57 ..     267     314 ..     260     318 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.14
     DUF4031   9 pargrlwsHlvaD.sleELhafAarlGvprra 39 
                 +ar ++  Hl  D  ++    +A+ +Gv++r 
  KIR64191.1 219 RARSHVATHLADDlGTAT---LARLAGVSERQ 247
                 345566677766655554...56666777765 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00029
     DUF4031  10 argrlwsHlvaDsleELhafAarlGvprrafqrktskdHYDvpeerra 57 
                 ar    +Hl+  +   L a A+r G   +   r++   HY v+ +r++
  KIR64191.1 267 ARTEAAAHLLTSTALPLAAVARRCGFGSTESLRQAFLAHYAVTPSRFR 314
                 5666889*******************999999999*******998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2339.63
//
Query:       KIR64192.1  [L=151]
Description: hypothetical protein TK50_00135 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-09   36.5   0.4    9.5e-09   35.5   0.1    1.7  2  4HBT      Thioesterase superfamily
     0.0004   20.7   0.1    0.00054   20.3   0.1    1.2  1  4HBT_3    Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.51   4.5e+03      14      27 ..      10      23 ..       8      40 .. 0.50
   2 !   35.5   0.1   1.1e-12   9.5e-09       2      78 ..      51     126 ..      50     127 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.51
                HHHHHHHHHHTTST CS
        4HBT 14 Deaagaalrslggr 27
                Dea++ ++  l g+
  KIR64192.1 10 DEARAWLAEILSGT 23
                55555555444444 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 1.1e-12
                 SSB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCEE CS
        4HBT   2 GvvhgGvylallDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrlv 78 
                 G + g++++ ++D a+ +a++ l g+  +++ ++ si fl p+ +g +l+v a+v+++ ++savv+ + +d  grlv
  KIR64192.1  51 GALSGPAMFWAIDLAGFVAVNVLVGPAPAMALANSSISFLEPAEPG-VLRVAAEVVNIASRSAVVDARATDHRGRLV 126
                 78999*****************************************.***********************9999987 PP

>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1     6e-08   0.00054      32      88 ..      81     138 ..      54     150 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 6e-08
                 SSEEEEEEE-S---SEEEEEEEEEEE--SS-EEEEEEEEET.TEEEEEEEEEEE---T CS
      4HBT_3  32 rlhslhvyFlrpgdagpviyhvervrdGrsfstrtvelsqg.grpiftatasfgraes 88 
                  l++ +++Fl p+++g +++ +e+v    + +++ ++++ + gr +++at+ f+ ++ 
  KIR64192.1  81 ALANSSISFLEPAEPGVLRVAAEVVNIASRSAVVDARATDHrGRLVAMATLHFALPSR 138
                 458899********************************8855***********98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1118.95
//
Query:       KIR64193.1  [L=361]
Description: branched-chain amino acid aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      9e-28   97.7   0.0    1.1e-27   97.4   0.0    1.1  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   0.0   6.1e-32   1.1e-27       3     220 ..      74     314 ..      72     317 .. 0.92

  Alignments for each domain:
  == domain 1  score: 97.4 bits;  conditional E-value: 6.1e-32
  Aminotran_4   3 fEtmrvy...ngei..ffldeHleRLrksaellglelpfdeeelrkileelleannsen........grlrllvsrgggglgaatsepsvavyvsalp 87 
                   E++++    +g+i  f+   ++ R+ +sa++l   +++dee++ + ++ l++a++ ++        ++lr+++++ ++ lg   ++++v  +v+a+p
   KIR64193.1  74 LEGLKAFrraDGSIwlFRPGLNARRFVASADRL-VLPELDEETFVESVAALVRADEAWVppyggeqsLYLRPFMFASEAFLG-VRPAQQVTYCVIACP 169
                  577776667789998777999*********999.8****************************999999*********9999.999999999999999 PP

  Aminotran_4  88 pgpeseke...lplvtssdvrrdapsplpgaKtln.yldnvlarreakergadevllvdedgn..vtEgstsNv.fivkggelitPplssgiLpGitr 178
                   g++  +    ++l++s++++r     +  aK    y+ +++ +rea  +g+++vl++  + +  + E +t+Nv f++++ +l+tP+l + iL+G+tr
   KIR64193.1 170 AGSYFPNGvtgVTLWISTKYSRASIGGTGAAKCGGnYAASLAPQREALGHGCEQVLYLGGEQRrdIDESGTMNVfFVTRDQQLVTPSLGT-ILDGVTR 266
                  9999999999*9999999999999999999997766********************777666669*********99************88.******* PP

  Aminotran_4 179 rallelakalgleveereitlkdle......eadeafltntlrgvlpv 220
                  +++l+la+++gl   +r i +++++         eaf  +t++ ++p+
   KIR64193.1 267 DSVLALAAEHGLDPVQRSIGMDEIRdgladgTVTEAFAAGTAAVITPI 314
                  *************************9*99999***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2669.81
//
Query:       KIR64194.1  [L=419]
Description: 3-oxoacyl-ACP synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-47  161.8   7.0    2.2e-47  161.8   7.0    1.7  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    1.4e-34  118.6   2.4    2.5e-34  117.8   2.4    1.4  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    5.3e-06   26.0   2.1    0.00015   21.3   0.3    2.5  2  Thiolase_N       Thiolase, N-terminal domain
  ------ inclusion threshold ------
      0.023   15.2   0.0       0.13   12.7   0.0    2.1  2  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
      0.059   13.0   0.2       0.15   11.8   0.2    1.6  1  Thiolase_C       Thiolase, C-terminal domain
       0.28   11.0   7.6        2.4    8.0   0.6    3.3  3  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.8   7.0   7.2e-51   2.2e-47       3     253 .]       5     247 ..       4     247 .. 0.89
   2 ?   -1.8   0.2      0.62   1.9e+03      96     213 ..     284     317 ..     278     352 .. 0.49

  Alignments for each domain:
  == domain 1  score: 161.8 bits;  conditional E-value: 7.2e-51
                    -EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..STTEGGTTSTHHHHHHHCTS-HHHHHHHHHHHH CS
  ketoacyl-synt   3 pvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfldvddfdpeffgispreaeamdpqqrllleaawe 98 
                    +v+i+G+ga++P g d e++w  Ll+g+++++ + a  +da +l   p+r+a++++           fdp++   +p++a++m ++++++++aa+e
     KIR64194.1   5 DVVITGIGAVTPLGLDRESTWHGLLAGKSGVGAITA--FDAADL---PTRIAAEVRG----------FDPAAHF-TPKRARRMARFSQFAVVAARE 84 
                    69*********************************5..666666...9********9..........9988765.555599*************** PP

                    HHHHHTS-HHTCTTGGEEEEEEESST..HH..HHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt  99 aledagltpeeldgsrvgvfiGvgag..dy..aalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslr 190
                    a++da lt +  + +rvgv++ ++ +  d+  aa++ l  +  ++  s ++v++ l+n+ a+ i++ lg++Gp+ +   AC+S++ a+  a + + 
     KIR64194.1  85 AVADARLTVDPDHADRVGVVVNAAVAgfDTveAATRGLLAPV-PSAPSAQFVPSSLTNMPACEIAIDLGAHGPVNASALACASGAYALLDARRLIL 179
                    *******99888888899988888885544654444444333.789999999*9****************************************** PP

                    TTS-SEEEEEEEE---SHHHHHHHHHTT.BB-TT.SGGGTTBTTB...-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpeavagfsaag.llspd.grckafdpka...dGfvlGEGvGavvLkrleda 253
                    sgeadv+++GG+++++tp  +ag+ ++g ++ ++ ++  a++p+a   dGfv+GEG+ ++vL+++e+a
     KIR64194.1 180 SGEADVVVCGGTDAAITPAMFAGLVSMGaMSERNaDPAGASRPFAadrDGFVFGEGAVVLVLESAEHA 247
                    ****************************999999*9988888888888***************99987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.62
                    HHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHHT CS
  ketoacyl-synt  96 awealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslrs 191
                     ++a++++gl p++                                                                                  
     KIR64194.1 284 IRQAVARSGLRPDD---------------------------------------------------------------------------------- 297
                    45566666666644.................................................................................. PP

                    TS-SEEEEEEEE---SHHHHHH CS
  ketoacyl-synt 192 geadvalaGGvellltpeavag 213
                      +d++ a G+++  + ++  +
     KIR64194.1 298 --VDYICAHGTSTKANDRTETV 317
                    ..44444444333333333333 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   2.4   8.4e-38   2.5e-34       1     117 [.     255     369 ..     255     370 .. 0.98

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 8.4e-38
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      ya+++g a++sd+ h s++ap g ++a+ai++a+a++g++p+dvdy+ ahgt+t+++D++E+ a+++++g+ a  +++av++ Ks++GHl +Aa
       KIR64194.1 255 YATLAGGALTSDAFHVSAPAPGGVHAAAAIRQAVARSGLRPDDVDYICAHGTSTKANDRTETVAIRAALGDAA--DRVAVSAPKSMLGHLIGAA 346
                      89*********************************************************************99..67***************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      G+++++ +++a++++v+ppt+nl
       KIR64194.1 347 GALGAMVCAMAIREQVVPPTINL 369
                      **********************8 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.3   4.9e-08   0.00015      59     112 ..     140     191 ..     129     199 .. 0.85
   2 ?    3.7   0.0     0.011        33      28      67 ..     281     322 ..     279     338 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.9e-08
                 TSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEE CS
  Thiolase_N  59 gqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGv 112
                 ++++a ++a+++g   +v a+++  +c+Sg+ a+ +a + i +geadvvv+gG+
  KIR64194.1 140 TNMPACEIAIDLGAHGPVNASAL--ACASGAYALLDARRLILSGEADVVVCGGT 191
                 55688888888888777777765..8***************************7 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHTS-GGGCCEEEE.EHSSCT.TSTSCHHHHHH CS
  Thiolase_N  28 aealkallekagvdpeevdeviv.Gnvlqa.gegqniarqaa 67 
                 a+a+++++++ g+ p++vd++   G+  +a   ++++a  aa
  KIR64194.1 281 AAAIRQAVARSGLRPDDVDYICAhGTSTKAnDRTETVAIRAA 322
                 789*****************9762555555333444444444 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       0.6   1.8e+03      33      63 ..     231     267 ..     229     311 .. 0.70
   2 ?   12.7   0.0   4.4e-05      0.13      15      49 ..     381     415 ..     375     419 .] 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.6
  KAsynt_C_assoc  33 GfGGsnvHviLksnkkekrkeesk......eeslprL 63 
                      fG   v ++L+s+++++r+++++       + ++  
      KIR64194.1 231 VFGEGAVVLVLESAEHARRRRATPyatlagGALTSDA 267
                     5777778899999999999888875555554444444 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 4.4e-05
  KAsynt_C_assoc  15 VvteptpwpggivgvNsfGfGGsnvHviLksnkke 49 
                     V+ ++ ++p +++  N+fGfGG n+ ++  +++++
      KIR64194.1 381 VPHQAREMPVRAALTNAFGFGGQNCVAVFTEPPSR 415
                     778888889999999*************9999876 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   4.9e-05      0.15      22      98 ..     278     359 ..     262     363 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.9e-05
                 GHHHHHHHHHHHHHT--GGGESEEEE--SBH.....HHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHH CS
  Thiolase_C  22 lgPayaikkvlkkagltvedidlfEinEAFa.....aqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselk 98 
                 +  a ai++++ + gl+ +d+d++ ++   +     + ++a   al+ ++++v v      lGH +Ga+Ga  ++  + +++
  KIR64194.1 278 VHAAAAIRQAVARSGLRPDDVDYICAHGTSTkandrTETVAIRAALGDAADRVAVSAPKSMLGHLIGAAGALGAMVCAMAIR 359
                 56689*******************99976541111134667777777788********************977766666555 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.6   0.00082       2.4       5      34 ..     162     190 ..     159     196 .. 0.81
   2 ?    4.8   0.0    0.0083        25      49      66 ..     229     246 ..     215     256 .. 0.83
   3 ?    0.4   0.3      0.19   5.8e+02      21      64 ..     289     335 ..     268     347 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00082
                  -GGGHHHHHHHHHHHHHHTTS-SEEEEEEE CS
  ACP_syn_III   5 aaCsgfvyalsvAdaliesgaakrvLviga 34 
                   aC++  yal  A++li sg+a  v+v+g+
   KIR64194.1 162 LACASGAYALLDARRLILSGEAD-VVVCGG 190
                  59******************776.556655 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0083
                  HTTB-EEEEEEEEEEESS CS
  ACP_syn_III  49 avlfGDGAgAvvleasee 66 
                   ++fG GA  +vle  e+
   KIR64194.1 229 GFVFGEGAVVLVLESAEH 246
                  579***********9854 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.19
                  HHTT.S-SEEEEEEEEEGGGCS-TTT..HHHHTTB-EEEEEEEEEEE CS
  ACP_syn_III  21 iesg.aakrvLvigaetlskilDwkd..rstavlfGDGAgAvvleas 64 
                   +sg +   v  i+a  +s   + +    +    +GD+A  v ++a 
   KIR64194.1 289 ARSGlRPDDVDYICAHGTSTKANDRTetVAIRAALGDAADRVAVSAP 335
                  45555555565677776676555544134555599**9998888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3308.03
//
Query:       KIR64195.1  [L=598]
Description: hypothetical protein TK50_00155 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-12   46.5   0.0    6.8e-08   31.6   0.0    2.0  2  Condensation  Condensation domain


Domain annotation for each model (and alignments):
>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   3.8e-12   6.8e-08       6     154 ..      28     173 ..      24     189 .. 0.86
   2 !   12.9   0.0   1.9e-06     0.033     195     283 ..     229     313 ..     209     321 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 3.8e-12
                   EXXCCHHHHHHHHH.HSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHHHHH CS
  Condensation   6 plspaQkrmwflek.leeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeeaiee 101
                   pl+ aQ  mw + + + +e + +n+   l l + + + rl  al+ lie h +LRt+++    g+p+Q ++ +  +++ v +      ++  + +ee
    KIR64195.1  28 PLTWAQSVMWDAMQwFGKEANQFNIGQPLVLAEPVGQARLLAALRDLIEAHQTLRTRYVAR-SGQPRQEVHASGAYDVVVADGH----DDPPRVAEE 119
                   8999999999766615677899************************************866.****************877777....455788999 PP

                   HHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEE.ECCT--TTTHHHHHHHH CS
  Condensation 102 faqkdlqepfdLekgpLfraalfkiaenrlllllsv.HHiivDGvSlgillrdl 154
                   +a + ++  fd e++ ++r++ +   + r++ ++ v  H+ +DG+ + +++  l
    KIR64195.1 120 LAGRLAETAFDHEAEWPLRVGCVVDGDGRVTAVALVgSHLAFDGWAFHTFVDLL 173
                   99999999*******99999999989999987765527*********9998655 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.9e-06
                   HHHHHHHHH.......S---BSS---SS---S-EEEEEE.EE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTT CS
  Condensation 195 eaYWseqlege.lpvlqLpkdkarpakrsfkadrlsikl.deeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRes 283
                    ++W++ l+   + + +Lp+    + ++ ++    +  l +++++++   la+ + ++  +vll + +l+L  y+g+d +v  +++ +R +
    KIR64195.1 229 LRHWEQGLSAApASMFDLPRA--ATGDQPIE----RHLLdSAAVAAAAAALAARTRTSFSTVLLCLTTLVLTAYNGHDTAVLKLITGNRLD 313
                   467776666520233335555..44444444....22234678999999***************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4503.63
//
Query:       KIR64196.1  [L=422]
Description: hypothetical protein TK50_00160 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-28   97.2   0.0    3.7e-24   85.3   0.1    2.9  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.7   0.0    0.0047        84      39     128 ..      35     118 ..      34     146 .. 0.80
   2 !   85.3   0.1   2.1e-28   3.7e-24     236     432 ..     213     376 ..     186     378 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.0047
                 EEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHH CS
        p450  39 lklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleelveeeaedlvek 128
                 l+l  +++ +++++++v+++ +++g  +s+++     ++   ++    ++  ++++++++R ++   +   g + +++++e++  +l+++
  KIR64196.1  35 LYLADRDMWLVIRYDHVRAAAKDHGGLSSAEG---IAYH---RSTLPVLFGLDQPDHTRMRGLIRHDFSPRGVQFWRPFIEQVCGELLDE 118
                 5788899999**************97777754...3444...2334456667779999******999999988899*****999999986 PP

  == domain 2  score: 85.3 bits;  conditional E-value: 2.1e-28
                 CSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHH CS
        p450 236 ksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRl 334
                   r d ++ l  a   +kg+  ++++e+   +l+ll++G++T+++ l  +L  L+++P+  + +r       +              +  a+i+Et R+
  KIR64196.1 213 PPRSDVVSKLFAAA--EKGG--VTENEILWLCLTLLVGGQETMTHFLGNMLDALLNHPDQFRLVRSR-----P-------------DLIPATIEETARF 289
                 34568888888885..6666..9************************************88877654.....3.............3899********* PP

                 SCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHH CS
        p450 335 hpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqn 432
                 +p+v  ++ R +t+dvv+++ +ip + +v ++  a +rdp  fp+P+ ++++R  d           +l+FGaG + C+G++lAr++   fl +l+++
  KIR64196.1 290 YPPVQ-NVFRTATTDVVVGNTTIPRDARVELSFAAANRDPRKFPDPNAYRIDRRTDG----------HLGFGAGIHTCVGMHLARLQAATFLRLLIER 376
                 *****.*********************************************995555..........89***********************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2789.39
//
Query:       KIR64197.1  [L=620]
Description: hypothetical protein TK50_00165 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-24   86.7   0.0    3.7e-24   85.8   0.0    1.5  1  ABC_tran      ABC transporter
    1.3e-05   25.0   0.0    1.7e-05   24.6   0.0    1.2  1  ABC_membrane  ABC transporter transmembrane region
    0.00063   19.4   0.3       0.11   12.0   0.1    2.7  2  AAA_25        AAA domain
    0.00081   19.3   0.0       0.16   11.8   0.0    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
      0.003   18.0   2.9      0.031   14.7   0.2    2.9  2  AAA_16        AAA ATPase domain
     0.0062   17.1   0.0     0.0098   16.4   0.0    1.2  1  AAA_23        AAA domain
  ------ inclusion threshold ------
      0.014   14.2   0.1      0.023   13.5   0.1    1.2  1  DLIC          Dynein light intermediate chain (DLIC)
      0.015   14.8   0.1        2.8    7.3   0.0    2.3  2  SMC_N         RecF/RecN/SMC N terminal domain
      0.018   14.8   0.1      0.039   13.7   0.1    1.5  1  AAA_29        P-loop containing region of AAA domain
      0.079   12.9   0.2       0.18   11.7   0.2    1.6  1  NACHT         NACHT domain
      0.096   12.4   0.0       0.15   11.8   0.0    1.3  1  AAA_24        AAA domain
       0.11   12.5   0.1       0.24   11.4   0.1    1.5  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
       0.12   12.3   0.0       0.21   11.5   0.0    1.4  1  DUF3331       Domain of unknown function (DUF3331)
       0.13   12.7   0.0       0.84   10.1   0.0    2.2  2  AAA           ATPase family associated with various cellular 
       0.14   12.0   0.1       0.34   10.8   0.1    1.6  1  NTPase_1      NTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.0   3.1e-27   3.7e-24       2     136 ..     385     538 ..     384     539 .. 0.81

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 3.1e-27
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS...--S-TTSBHHHH.........HHHTCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx.........xxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe...pqlfpeltvren.........esdeeieka 88 
                   ++l+l +g +vaivG+nGaGK+tL+kl++gll+pt+G++l+dg dl + +l+ +r++i+  +q+    +l  +     +         +++  + +a
  KIR64197.1 385 AGLDLHLPAGATVAIVGDNGAGKTTLVKLVCGLLRPTAGRVLVDGVDLADLSLPGWRARIAAGFQDfvrLELPARR----TvgvgdlprlDDEPAVRAA 479
                 56899*************************************************************5544444444....3455589977555558888 PP

                 HHHSTTGG.......TTCBGESTTS...GGS-HHHHHHHHHHHHHHHTSSEE.EEESTT CS
                 xxxxxxxx.......xxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran  89 lsklglke.......lkdtvvkssp...ssLSgGqkqrvalarallkkpkll.llDEpt 136
                 l++ g  +         dt ++++    ++LSgGq+q++al ra++++++ll +lDEp 
  KIR64197.1 480 LERAGAGDlvgqleaGLDTQLGREYadgAELSGGQWQKLALGRAFMRDAPLLvVLDEPA 538
                 8888888888888783344444443466******************998876379***7 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.4e-08   1.7e-05       4     273 ..      27     294 ..      24     295 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.4e-08
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS.THHHHHHSCHHH CS
  ABC_membrane   4 iillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrq.pmsffdtnsvGe 99 
                   +++l +++ ++ pl+++ l  +++  +  g p     ++  +++++l++a + l+ +    +  ++e  + +l+++l+++      m+ f++    +
    KIR64197.1  27 ALVLVVAGAAAWPLVAIMLRVLFEAANA-GRPVA--ASLAGVAVAVLLIAGLTLGHFAHIAYFELSELDVLHLHQELMDATNGSaGMAHFEQPEFAD 120
                   6788888899999999999999999988.77777..5555666666666666666666666679****************98544************ PP

                   HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH CS
  ABC_membrane 100 llsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsavia.kilkklkkkeqkavakassvaeEslsgirtVka 195
                    +  l +dv++lr gl+  l  +  ++++ +++ +++ +    l l l+a+ pl++  +a ++  ++++++ +   +   ++++a+ + sg + ++ 
    KIR64197.1 121 KVRILEEDVEQLRVGLQAVLTGVGLAVSMTLTTAVLASLHPLLLLLPLVAVPPLLAGRRAERMvDRSREASAESTRRALGLFRLATHAASG-KELRV 216
                   *******************************777777666666655555555555555554331455555555555555888889999888.779** PP

                   TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane 196 fgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfga 273
                   fg e++++++     ++a ++ ++ + +++l+ +  ql++   y++a ++      +g   vgd++ +++++a+++++
    KIR64197.1 217 FGLEQEVRRRHGAFWQDATRRLWRTQAVASLVRMLGQLAFAGGYIAAVLLILRDAVAGRRGVGDVILVITIAAQVNQQ 294
                   ***********************************************9999999999**************9998876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   9.4e-05      0.11      28      50 ..     389     411 ..     380     430 .. 0.90
   2 ?    4.5   0.0     0.019        23     143     188 ..     529     573 ..     439     574 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.4e-05
      AAA_25  28 gllpagelallaGapgtGKttla 50 
                  +lpag++++++G+ g+GKttl+
  KIR64197.1 389 LHLPAGATVAIVGDNGAGKTTLV 411
                 589******************96 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.019
      AAA_25 143 vrlvviDplsralggdensnsdv.galvealeriarrtgaavllvhH 188
                 + lvv+D  ++al+++  +++++ ++   +++++a++tga  ++v H
  KIR64197.1 529 PLLVVLDEPAAALDAE--AEHAMfERYRLQAAWVAAATGAVSVFVSH 573
                 7799999988887664..44777799999999999*********999 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00013      0.16       3      22 ..     398     417 ..     397     460 .. 0.82
   2 ?    5.3   0.0     0.012        15     236     286 ..     509     557 ..     477     574 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
      AAA_21   3 vliGpNgsGKSnLLdaldll 22 
                 +++G+Ng+GK++L ++  +l
  KIR64197.1 398 AIVGDNGAGKTTLVKLVCGL 417
                 79***********9987555 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.012
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkels 286
                 elS G+ + lal  a+ r+++   l+++DEp + L+ ++ +  +e  ++ +
  KIR64197.1 509 ELSGGQWQKLALGRAFMRDAP--LLVVLDEPAAALDAEAEHAMFERYRLQA 557
                 78*******99999***9999..7************998888887765555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.14   1.6e+02      31     123 ..     274     367 ..     264     379 .. 0.49
   2 !   14.7   0.2   2.6e-05     0.031      25     143 ..     395     536 ..     381     558 .. 0.52

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.14
      AAA_16  31 GesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde.......aesaeleawre.kleeala.avpelagaea.... 116
                 G +GvG   lv +++ +++++ + ++ g  ++l              r + + q lde        e a+++++r  + ++a + a p++++a+a    
  KIR64197.1 274 GRRGVGDVILVITIAAQVNQQ-VAAAVGVLQDL-------------QRLRSVYQRLDEvhelvraGERADRDEARPaAAPAA-SpALPAVPPAAApags 357
                 555555555555555555555.33344444444.............333333333333222221122222222222022233.2466666666667776 PP

      AAA_16 117 ...srllell 123
                    +rl++ +
  KIR64197.1 358 pppERLRDGI 367
                 7777777665 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 2.6e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy..salaqalareellrqlldeaesaeleawrekleealaavpelagaeasrlle 121
                   v ++G+ G GK++lv+ +   l+ + g +l    d  + ++p   + +a  +   + +  l+ +a+ +    +  +l+++ a  ++l++a+a +l  
  KIR64197.1 395 ATVAIVGDNGAGKTTLVKLVCGLLRPTAGRVLVDGVDLADLSLPGwrARIAAGF---QDFVRLELPARRTVGVGDLPRLDDEPAVRAALERAGAGDLVG 490
                 5799*****************888877555655555555333333322244444...555555555344444444444444444333333333322222 PP

      AAA_16 122 llkrll.allsrder........................plvlvlDd 143
                 +l + l  +l r e                         pl++vlD+
  KIR64197.1 491 QLEAGLdTQLGR-EYadgaelsggqwqklalgrafmrdaPLLVVLDE 536
                 222222111111.1111112222223333333333333367777775 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.2e-06    0.0098      22      41 ..     397     416 ..     387     424 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.2e-06
      AAA_23  22 tlItGpNGaGKTTildAikl 41 
                 ++I+G+NGaGKTT++  ++ 
  KIR64197.1 397 VAIVGDNGAGKTTLVKLVCG 416
                 58************988775 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.9e-05     0.023      21      56 ..     390     425 ..     386     430 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.9e-05
        DLIC  21 klPsgksvlvlGedgsGkttliaklqGveeekkGrG 56 
                  lP+g +v ++G++g+Gkttl+  + G+  +  Gr 
  KIR64197.1 390 HLPAGATVAIVGDNGAGKTTLVKLVCGLLRPTAGRV 425
                 69********************99999988888875 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0024       2.8      26      42 ..     396     412 ..     388     425 .. 0.85
   2 ?    5.0   0.0     0.012        14     136     180 ..     509     550 ..     487     585 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0024
                 EEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlld 42 
                   aivG NG+GK+ l+ 
  KIR64197.1 396 TVAIVGDNGAGKTTLVK 412
                 568**********9986 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.012
                 CS-HHHHHHHHHHHHHHHHCCS--S.EEEECTTTTTS-HHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpap.lyllDeidaaLDeknvkkva 180
                 +LSgG+ + +a  L  A   ++ ap l++lDe +aaLD++  +++ 
  KIR64197.1 509 ELSGGQWQKLA--LGRAF--MRDAPlLVVLDEPAAALDAEAEHAMF 550
                 68999876444..44343..344441689*********99877665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   3.2e-05     0.039      22      48 ..     393     420 ..     385     425 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.2e-05
      AAA_29  22 kg.atlltGpsGsGKSTllDAiqalLvp 48 
                 +g ++ ++G++G+GK+Tl+  +  lL p
  KIR64197.1 393 AGaTVAIVGDNGAGKTTLVKLVCGLLRP 420
                 566899************9666555555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00015      0.18       2      21 ..     396     415 ..     395     423 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
                 CEEEEC-TTTCHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkla 21 
                 +v++ G++G GKTtL++ ++
  KIR64197.1 396 TVAIVGDNGAGKTTLVKLVC 415
                 799************99776 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.15       3      53 ..     395     452 ..     393     455 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
      AAA_24   3 lkiliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfpdieswedfl 53 
                 + ++i+G++g+GKTtl+k           ++l+  ++    sl +++   + +++df+
  KIR64197.1 395 ATVAIVGDNGAGKTTLVKLVcgllrptAGRVLVDGVDLADLSLPGWRARIAAGFQDFV 452
                 789***************9999998888888888888888888888887777888876 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1    0.0002      0.24      19      41 ..     394     416 ..     381     425 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
                 TEEEEEEESTTSSHHHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglak 41 
                 g+++++ Gd GaGKTtlv+ ++ 
  KIR64197.1 394 GATVAIVGDNGAGKTTLVKLVCG 416
                 67899*************98875 PP

>> DUF3331  Domain of unknown function (DUF3331)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00018      0.21       6      74 ..     208     275 ..     203     294 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00018
     DUF3331   6 esrasslavevierlsettvtilWrdatrCsyedqvWraararrkGrCalsGaairrgdlvykPrtras 74 
                  + +++l v  +e+    +    W+datr  ++ q+  a + r  G+ a++G+ i++  l+ +  + + 
  KIR64197.1 208 AASGKELRVFGLEQEVRRRHGAFWQDATRRLWRTQAV-ASLVRMLGQLAFAGGYIAAVLLILRDAVAGR 275
                 5667788888899999999999*************96.6689*************99888777666655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.2   1.4e+03      64      81 ..     315     332 ..     274     338 .. 0.79
   2 ?   10.1   0.0    0.0007      0.84       2      23 ..     398     419 ..     397     460 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.2
                 EETGGGHHHHHTTCCCHH CS
         AAA  64 iDEidalaksrsgsesee 81 
                 +DE+++l+++ ++++++e
  KIR64197.1 315 LDEVHELVRAGERADRDE 332
                 899999999994444444 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0007
                 EEESSTTSSHHHHHHHHHHHHT CS
         AAA   2 llyGppGtGKTllakavakelg 23 
                  ++G  G GKT+l+k v+  l 
  KIR64197.1 398 AIVGDNGAGKTTLVKLVCGLLR 419
                 579***************9873 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00028      0.34       2      26 ..     397     421 ..     396     436 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00028
                 EEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkss 26 
                 v+i G  G GKtTlvk v+ ll+  
  KIR64197.1 397 VAIVGDNGAGKTTLVKLVCGLLRPT 421
                 7899***************999754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 3949.66
//
Query:       KIR64198.1  [L=264]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-64  215.7   0.2    7.8e-64  215.4   0.2    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    2.9e-42  144.3   0.1    3.7e-42  144.0   0.1    1.1  1  adh_short        short chain dehydrogenase
    8.6e-11   42.1   0.2    1.1e-10   41.7   0.2    1.1  1  KR               KR domain
  ------ inclusion threshold ------
      0.026   14.0   0.4      0.072   12.5   0.4    1.7  1  Epimerase        NAD dependent epimerase/dehydratase family
      0.036   13.4   0.0      0.065   12.5   0.0    1.4  1  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
       0.15   11.8   0.7       0.36   10.6   0.4    1.8  2  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.4   0.2   2.6e-67   7.8e-64       1     234 []      13     249 ..      13     249 .. 0.96

  Alignments for each domain:
  == domain 1  score: 215.4 bits;  conditional E-value: 2.6e-67
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                   G  +gIGra+A +la+ G +vv+ + ++++ +++v++  e+lg ++  +++DV+++e++++l++ ++++fg+lD++v na+ +    +++++++  +
    KIR64198.1  13 GSSRGIGRALALTLARGGGSVVVNYKKNAElADQVRKEIEQLGGRAltVAADVEQPEEIDRLFAVAEQEFGTLDYFVCNAAASSF--KNIMDLKVHH 107
                   5679**************************9************88557*************************************..********** PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHH..H CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdel..l 189
                   +dr  ++nl++++l +++a++lm +gg+iv+lss+g+ r+ p y+  gaaKaa+ea +ry+A e+g +gi vNav  g+i+T++++ + + + +  l
    KIR64198.1 108 LDRSYAMNLRAFVLGCQHAVRLMPDGGRIVALSSYGSIRAYPTYANLGAAKAAIEAWVRYMALEFGGRGINVNAVNGGIIETESSQYFYDVPGMapL 204
                   ****************************************************************************************998876115 PP

                   HHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 190 eelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   + +  ++p gr+gt++e+a++++fL+s++a+yitGqt+v+DgGl+
    KIR64198.1 205 STVLPKIPKGRMGTAQEIADVVAFLLSPAAEYITGQTIVADGGLS 249
                   66789**************************************86 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   0.1   1.2e-45   3.7e-42       1     188 [.       7     193 ..       7     198 .. 0.98

  Alignments for each domain:
  == domain 1  score: 144.0 bits;  conditional E-value: 1.2e-45
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 k++l+tG s+GIGra+a +la+ G +vvv +++++e + +v ke++++g +al++++Dv++ ee+++l++ a++++g+ld +v NA+ + ++++ +l+ 
  KIR64198.1   7 KTALITGSSRGIGRALALTLARGGGSVVVnYKKNAELADQVRKEIEQLGGRALTVAADVEQPEEIDRLFAVAEQEFGTLDYFVCNAAASSFKNIMDLKV 105
                 79************************************************************************************************* PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                    +r++++Nl + +l ++++++ m    +GrIv  sS  +  +++ +a  +A+Kaa+++++r +a e+  +gi+vnav+ G+++T+  +
  KIR64198.1 106 HHLDRSYAMNLRAFVLGCQHAVRLMP--DGGRIVALSSYGSIRAYPTYANLGAAKAAIEAWVRYMALEFGGRGINVNAVNGGIIETESSQ 193
                 ************************99..99********************************************************9876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.2   3.7e-14   1.1e-10       2     164 ..       8     169 ..       7     188 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 3.7e-14
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 t litG   g+G++la +la+ g + +v   ++a+  ++     +e+e+lg +  +vaaDv +++++ +l++ +++e++++   +  A ++  k ++++
  KIR64198.1   8 TALITGSSRGIGRALALTLARGGGSVVVNYKKNAELADQ---VRKEIEQLGGRALTVAADVEQPEEIDRLFAVAEQEFGTLDYFVCNAAASSFKNIMDL 103
                 579******************999999999888554444...5689999999999******************************************99 PP

                 -HHHHHHHHT....TTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHH CS
          KR 101 taedleqvla....pKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrr 164
                 +  +l++ +a    + v G+++  +l++d     +v +SS +++   ++ an  aa a ++a+++y +
  KIR64198.1 104 KVHHLDRSYAmnlrAFVLGCQHAVRLMPD--GGRIVALSSYGSIRAYPTYANLGAAKAAIEAWVRYMA 169
                 99998887652222778888888888885..789******************************9976 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   2.4e-05     0.072       1     171 [.       9     183 ..       9     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.4e-05
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHH....HH.T-SEEEE--S---HHHHHHSHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfk....ee.qpdavihlAavggvaassedpadf 87 
                 +l+tG +  iG+al+  l++ g  v++  +++ + + + ++++         v +d+ ++++++rlf+    e+   d+ +  Aa ++ ++ ++ +   
  KIR64198.1   9 ALITGSSRGIGRALALTLARGGGSVVVNYKKNAELADQVRKEIeqlggraLTVAADVEQPEEIDRLFAvaeqEFgTLDYFVCNAAASSFKNIMDLKVHH 107
                 59********************99888888856555555555589999998899999999999988862221235578888888888888889999999 PP

                 HHHHTHHHHHHHHHHHHHTCT......EEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESE CS
   Epimerase  88 ieknlqgtlnlleaarkagvk......rllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfn 171
                 +++  +++l+ +    ++ v+      r++ lsS   YG                ++    +aaK+a+e  v+++a ++g + i+++  n
  KIR64198.1 108 LDRSYAMNLRAFVLGCQHAVRlmpdggRIVALSS---YGSIRAY-----------PTYANLGAAKAAIEAWVRYMALEFGGRGINVNAVN 183
                 9999999999998888888888888889999999...8855553...........34445599999999999999999998888888766 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.2e-05     0.065      33      79 ..       3      49 ..       1      54 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
                   --TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCC CS
  THF_DHG_CYH_C 33 elegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitre 79
                   + +gk++++ G s+ +g++lal L++ +  V v  +k  +la+ +r+
     KIR64198.1  3 SYHGKTALITGSSRGIGRALALTLARGGGSVVVNYKKNAELADQVRK 49
                   579******************************99999999998875 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00012      0.36      40      72 ..       6      36 ..       1      42 [. 0.79
   2 ?   -2.9   0.0         2   5.9e+03      14      24 ..     118     128 ..     113     130 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00012
                     -SEEEEESTSSHHHHHHHHHHHHSS--EEEEEE CS
  Eno-Rase_NADH_b 40 pkkvLviGaStGYGLAsriaaafgagadtigVs 72
                      k++L+ G+S G G A  +++a+g g   + V 
       KIR64198.1  6 GKTALITGSSRGIGRALALTLARGGGS--VVVN 36
                     599*******************99664..4444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2
                      --HHHHHHHHH CS
  Eno-Rase_NADH_b  14 ahPaGcaknve 24 
                      a   Gc+++v+
       KIR64198.1 118 AFVLGCQHAVR 128
                      45568888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 1974.61
//
Query:       KIR64199.1  [L=382]
Description: acyl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-40  136.8   7.8    9.4e-40  136.3   7.8    1.3  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    3.9e-22   79.0  12.0    7.2e-22   78.1  12.0    1.5  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
      4e-18   65.4   0.1    1.1e-17   64.0   0.0    1.8  2  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    4.9e-17   62.6   0.4    2.4e-16   60.4   0.0    2.2  2  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3   7.8   2.1e-43   9.4e-40       1     150 []     227     378 ..     227     378 .. 0.98

  Alignments for each domain:
  == domain 1  score: 136.3 bits;  conditional E-value: 2.1e-43
                    TBHHHHHTTT.T--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------.HHHHHHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvamet.lnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd.raeasmaKlf 94 
                    g G++va+ + l+ +R++va++++glarra e a+++arrr +fgkpl + q++++ lae aa++eaar l+++aa++ +ag+ d  a +smaKl+
     KIR64199.1 227 GAGLTVALGGfLTPSRIGVAMTCVGLARRAQELAVAHARRRVTFGKPLTARQAIAFALAENAADIEAARQLTLHAARRWEAGAADaDALSSMAKLV 322
                    6799****999**************************************************************************9********** PP

                    HHHHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHHH. CS
  Acyl-CoA_dh_1  95 aselaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarrll 150
                    a +++++v+d+a+q +Gg Gy e+ p+er yrdar+ r+ eGt+eiq+ +iar +l
     KIR64199.1 323 AVDMLTRVTDKALQAHGGIGYWEGSPIERVYRDARAQRFEEGTNEIQKTVIAREIL 378
                    *****************************************************985 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1  12.0   1.6e-25   7.2e-22       1     127 [.     243     360 ..     243     367 .. 0.91

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 1.6e-25
                    .HHHHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   1 lgiaavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaia 96 
                    +g+a+ ++G+Ar+a + +v++ar+rv+  +g++l+ ++a+ +alae aa+++AAr+l+++aa+r +++ aa++       a +++a+++av++ ++
     KIR64199.1 243 IGVAMTCVGLARRAQELAVAHARRRVT--FGKPLTARQAIAFALAENAADIEAARQLTLHAARR-WEAGAADA------DALSSMAKLVAVDMLTR 329
                    579************************..***********************************.54333333......468************** PP

                    HHHHHHHHCGGGGGBTT-HHHHHHHHHHHHC CS
  Acyl-CoA_dh_2  97 avdalfeaaGgsalrkesplqRlwRDahaaa 127
                    ++d++ +a+Gg ++ + sp++R++RDa+a +
     KIR64199.1 330 VTDKALQAHGGIGYWEGSPIERVYRDARAQR 360
                    ***************************9954 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   2.5e-21   1.1e-17       1      96 [.     121     214 ..     121     215 .. 0.90
   2 ?   -2.6   0.0       1.5   6.6e+03      27      51 ..     296     320 ..     282     333 .. 0.72

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 2.5e-21
                    EEE---SS-SS-GGG---EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEE.TS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvkttaaerdggeyvlnGeKiwitnaaiatlalvlar.tekpdrarglslflvprdapgvsvrrieeklGlrglptgelvfe 95 
                    af lTEp+aG+ +   ++  + rdg+ y l+GeK+ it +  ++++l++ar ++++  ++g   ++v+r+ pgv+v+++ +++G+rg+++++l f+
     KIR64199.1 121 AFTLTEPTAGTGADLRAS--VVRDGDTYLLSGEKHLITFGVSCDYWLLFARlAGTTG-KDGTVALMVDRHVPGVRVEPMADTMGVRGTDHAHLIFD 213
                    799*******99655555..8888888************************655555.88999********************************9 PP

                    . CS
  Acyl-CoA_dh_M  96 d 96 
                     
     KIR64199.1 214 G 214
                    5 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.5
                    EEEEEEEEEEEETTTT-SEEEEEEE CS
  Acyl-CoA_dh_M  27 eyvlnGeKiwitnaaiatlalvlar 51 
                    + +l+ + +w  +aa+a+ +  +a+
     KIR64199.1 296 QLTLHAARRWEAGAADADALSSMAK 320
                    5777778888888888877766665 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.0   5.4e-20   2.4e-16       6     112 ..      11     116 ..       7     117 .. 0.93
   2 ?   -0.8   0.1      0.51   2.3e+03      25      34 ..     303     312 ..     274     347 .. 0.52

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 5.4e-20
                    HHHHHHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHHS-HHH CS
  Acyl-CoA_dh_N   6 alrdtvrefaeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailrfGteeq 101
                     l ++v +f++   +++a+ +++++++p +lw+ l + G+l ++ p eygGagl++++++ ++e ++   a+l++++ v +++   a+ +f+t+eq
     KIR64199.1  11 TLAREVEAFVRGPGEDYAETIERTRAVPPQLWDDLRDRGYLRLAAPAEYGGAGLSFTQYLRLLELFSMSHASLRMIVHVCNGVW-RAMDQFATDEQ 105
                    57899****************9999*************************************************9888877666.79********* PP

                    HHHHHHHHHTT CS
  Acyl-CoA_dh_N 102 krryLpklasg 112
                    ++r++ + ++g
     KIR64199.1 106 RKRFVLPQVAG 116
                    ****9888877 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.51
                    HHHHHTSGHH CS
  Acyl-CoA_dh_N  25 ewdeegefpr 34 
                    + +e+g+ + 
     KIR64199.1 303 RRWEAGAADA 312
                    2223333233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2603.22
//
Query:       KIR64200.1  [L=1035]
Description: 3-phosphoshikimate 1-carboxyvinyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-78  264.9   0.0    1.5e-78  264.4   0.0    1.2  1  EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvin
    1.2e-78  264.7   0.0    1.6e-78  264.2   0.0    1.2  1  AMP-binding    AMP-binding enzyme
    2.4e-11   44.4   0.2    2.4e-11   44.4   0.2    3.1  3  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.4   0.0   2.4e-82   1.5e-78       4     417 .]       9     421 ..       6     421 .. 0.90

  Alignments for each domain:
  == domain 1  score: 264.4 bits;  conditional E-value: 2.4e-82
                    SS--EEEEE--B-HHHHHHHHHHHGGGBSSEEEES---SHHHHHHHHHHHHTT.EEEEEECTSEEEEEGTT..--EE-HHHHTT-GGGGGGHHHHH CS
  EPSP_synthase   4 gkrlegevkvpGsksisnralllAaLaegestitnlLdseDvrsmlealreLgaeiikldeekevviveglggsfeapeelvldlgnsgtalrlLt 99 
                    +++l ge+ +p+sk  ++ral+lA+La+g+s+i +   +  vr+++ alr Lg + i +  ++++++v+g   +   p    + +g sgt+l +Lt
     KIR64200.1   9 SEPLVGELDIPASKYHAHRALMLASLADGTSRIHGACGAGHVRHTIGALRDLG-TSITV--DDDTFVVRGGPYRPVRP---EVSVGSSGTTLYFLT 98 
                    6789*************************************************.55566..45777788734444444...69************* PP

                    HHHSEESSEEEEE-SBTTCGS--HHHHHHHHHTT-EEEEETTEEEEEESEET..SS-BEEEEETSSTTHHHHHHHHHHHTTSBS..EEEEES.-TT CS
  EPSP_synthase 100 allalasgevvLtGdesirkRPidrlldaLrqlGaeieveegenkaplkvkg..lklkgveikaevsSqqvtsllllaallaeg..ttelee.las 190
                    +l+ala+++v++tG+++ r RPi +lldaL  +G+eie+    + +p++v +   ++++vei +++ Sq ++slll+ + +a g   + +++ +  
     KIR64200.1  99 GLAALAGSPVTITGQKYFRRRPIGPLLDALAGIGVEIESTG--GLLPIRVPArpPTGGRVEIPGTL-SQWISSLLLVGP-FATGptVVDVVGpFNE 190
                    **************************************444..6*****999999*********97.7***********.888877788999999* PP

                    HHHHHHHHHHHHHTT-EEEETTSSEEEEEE--SSB--EEEE--B-HHHHHHHHHHHHHTT-EEEEES--GGGGH.HH.....HHHHHHHHTT.EEE CS
  EPSP_synthase 191 epsiddtlkmlkkfgikietsgteesitvkGkeklpgteyvvegDassAayflvaAaitggevtvenvginslq.Gd...iealdeilekmg.aei 281
                    + ++d t+ m+++fg +++   ++++++++++++++ +e++ ++D   Aa+ l+aAa+ +++v+ +++++ +    d   + +l + l++mg   +
     KIR64200.1 191 RSYVDLTIAMMRRFGLHVSVGADGRRFEIEPGQRATPAEVHLPPDVGAAAFGLAAAALHPSDVLFRGLPAGPSSeVDhpeADLL-DHLREMGlPLL 285
                    **********************************8888*****************************99877664441113345.59*****4445 PP

                    EEESTSEEEEEET..TS--BEEEEEBGSTTSBHGGGHHHHHHHHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEETTEEEEEEEEE.EB-EEE CS
  EPSP_synthase 282 tqeedasivvgps..glklkdvdietlpdeaptlavlaafaegttviegiaelrvketdrlaamateLrklGaeveeeedgliiipaekqlkgaev 375
                    ++ ++ +++v++    l ++ vd + +pd +p+l vl a a g tv+e++a++r ke+dr+aam + L+++G+ v+ + d l + +++  l+ a +
     KIR64200.1 286 RDPATGWTRVRHDgsRLGGVRVDCRAVPDMLPVLSVLGAHARGSTVLENVAHVRLKESDRVAAMLQ-LNRMGGRVRLDADRLVCDGVDR-LREADL 379
                    5667788888888778888999******************************************86.****************888885.****** PP

                    E-TTSTTTTHHHHHHHHHSBSEEEEETTHHHHHHSSSHHHHH CS
  EPSP_synthase 376 esydDhRiamalalaglvaegeveiddiectdksfpefeekL 417
                     s++DhR+ mala+a+ +a+ge + + +++ ++s+p+f +++
     KIR64200.1 380 SSFNDHRVLMALAVAASRASGESRLTYPNAHRISYPQFLDQM 421
                    **************************************9986 PP

>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.2   0.0   2.6e-82   1.6e-78       2     422 ..     466     916 ..     465     917 .. 0.89

  Alignments for each domain:
  == domain 1  score: 264.2 bits;  conditional E-value: 2.6e-82
                  HHHHHHSTTSEEEEE....CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTE CS
  AMP-binding   2 eeqaaktpdkvalvd....sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledsea 95 
                  +++a+ +p+  a++     +  g  lT+reld+r++++Aa L++lGv++gd+Va  lpn +e+vv+ la+l++Gav+ p+ p ++++e+  +l+ s+a
   KIR64200.1 466 RRHARAHPGTAAVIEaaspGRPGGVLTWRELDRRADAAAALLLELGVGPGDVVAWQLPNWHEFVVLTLATLRVGAVCCPMMPFFREREVDDLLRRSRA 563
                  7899*********999999888999************************************************************************* PP

                  SEEE.......ETCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.................................-TSC CS
  AMP-binding  96 kvli.......atvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekae.................................kpee 152
                  +v++       +  d+ +  +++l+a ++ +av++v+v+  d++l +  +   + ++  +                                      
   KIR64200.1 564 RVFVvpaafrgR--DHVAeTASVLAAPGA-PAVAHVLVVGGDGPLPAGAASPGAACPGPELagpvasvpppeggpaarwqrfdaalarqrpdaaA-LA 657
                  ****99866431..344445667777765.688889999988888776655555555544267899999***********************963.45 PP

                  CCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHH CS
  AMP-binding 153 eeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelie 250
                  ++++ pd la +++TSGT G+PKGV ++ + l+ ++a +   ++ +l++ d++++  plah +g+ +++++ ++ Ga vvl p ++   p++ l++++
   KIR64200.1 658 ARRPAPDALAQLMFTSGTSGQPKGVLHRADTLTRAAAMQ--ARHLGLTAADRLYVPSPLAHQTGFLYGMWVGFVLGAPVVLEPIWSG--PAA-LATLH 750
                  6689****************************9996654..34577899********************************888877..444.599** PP

                  HHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEE CS
  AMP-binding 251 klkvtviagvPrvlealle.sgalkaakkakdlsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgve 347
                  + ++t+++++  +l  l++  +a          ++lr++++ g++++++l++++ +++g +v  ++G TE +  +  +p++e+ +  g+ G++l+gv+
   KIR64200.1 751 RTGATFVQAATPFLADLVDaVEAGG-----GPPKALRVFVATGAAVPRTLAERATRTLGAAVCGAWGSTESCLGTLAAPTDEPARAWGTDGRALRGVR 843
                  *****************99433333.....34455****************************************7788899999************* PP

                  EEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 348 vkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                  +++ D++ g  +p g+eG   v+g +++ gYl +pe ta a++ +++w+r+GDl+++de G ++i+gR  d+i++
   KIR64200.1 844 IRVTDDD-GTVLPAGTEGNFEVGGDCLFAGYLDHPEWTAAALT-PDGWYRSGDLAVIDEAGFVRITGRVRDVINR 916
                  ******9.9*********************************9.767**************************86 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.4       1.4   8.4e+03       9      22 ..     590     603 ..     586     610 .. 0.83
   2 ?   -1.1   0.0      0.65   3.9e+03      53      72 ..     774     794 ..     741     808 .. 0.54
   3 !   44.4   0.2   4.1e-15   2.4e-11       1      76 []     925    1016 ..     925    1016 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.4
                    STTEEEEEEE---- CS
  AMP-binding_C   9 hpaVaeaaVvGvpd 22 
                     paVa + VvG + 
     KIR64200.1 590 APAVAHVLVVGGDG 603
                    59********9765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.65
                    HT-TTTS-SEEEE-.S---B- CS
  AMP-binding_C  53 elgpyavpkkvvfv.delpkt 72 
                      gp ++ + +v++ +++p+t
     KIR64200.1 774 GGGPPKALRVFVATgAAVPRT 794
                    444444444444332344444 PP

  == domain 3  score: 44.4 bits;  conditional E-value: 4.1e-15
                     HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE--.....----............HHHHHHHHH.HHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C    1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkd.....gsea............leeeLkahv.rkelgpyavpkkvvfvdelpktrsGK 76  
                     evE+ l +hpaV+++a+v++pd++ Ge+++afVv+++     g  +            + +  ++++ ++++++   p++++ v+elp++  GK
     KIR64200.1  925 EVEQLLHTHPAVRDVAIVAMPDPRLGERACAFVVPQPapeasG--PeavgpegspeplTLDGMRRFLdERKVAKQYWPERLETVPELPRNVVGK 1016
                     8*********************************965344441..0335556666678889999999666999999**************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1035 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 7056.31
//
Query:       KIR64201.1  [L=85]
Description: hypothetical protein TK50_00200 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-12   45.5   0.7    8.8e-12   45.2   0.7    1.2  1  PP-binding  Phosphopantetheine attachment site
  ------ inclusion threshold ------
      0.026   15.0   0.3      0.039   14.4   0.2    1.3  1  DUF1493     Protein of unknown function (DUF1493)
      0.032   14.4   0.1      0.042   14.0   0.1    1.2  1  YdiH        Domain of unknown function


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.7   1.5e-15   8.8e-12      11      67 .]      24      79 ..      11      79 .. 0.96

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 1.5e-15
  PP-binding 11 lgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67
                lgv++e+i+pd+ ++ l +DSl++++l+a++ +ef+veip s+l +  t+++l+ ++
  KIR64201.1 24 LGVDEEAITPDAKFDQLDIDSLDVADLMAMVVKEFKVEIPRSEL-ADVTIGQLVTRI 79
                899*****************************************.9*******9876 PP

>> DUF1493  Protein of unknown function (DUF1493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   6.6e-06     0.039      23      60 ..      26      62 ..       8      70 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.6e-06
     DUF1493 23 gkeveltldtdldedlkldeddaedllekffkrfnVdr 60
                + e  +t+d +  ++l++d  d+ dl+    k+f+V+ 
  KIR64201.1 26 VDEEAITPDAKF-DQLDIDSLDVADLMAMVVKEFKVEI 62
                67889*******.89*********************85 PP

>> YdiH  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1     7e-06     0.042      17      53 ..      26      62 ..      13      68 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7e-06
        YdiH 17 rdqsvlsPaqylkklkllelefadllalsslelkeei 53
                 d+  ++P   + +l    l+ adl+a+   e+k ei
  KIR64201.1 26 VDEEAITPDAKFDQLDIDSLDVADLMAMVVKEFKVEI 62
                688999**9999**********************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 740.06
//
Query:       KIR64202.1  [L=376]
Description: radical SAM protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00014   22.3   0.0    0.00025   21.5   0.0    1.8  1  Radical_SAM  Radical SAM superfamily
    0.00039   20.7   0.0     0.0011   19.3   0.0    1.7  2  Fer4_12      4Fe-4S single cluster domain
      0.001   19.2   0.0     0.0044   17.1   0.0    1.9  2  Fer4_14      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   4.2e-08   0.00025       3      89 ..      52     131 ..      50     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 4.2e-08
                  EESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlp 89 
                   t  Cn rC+ C+  e + +  ++++ ++  i + v++l + +gv + +l ggep+l  + v+   ++         +t++tng++p
   KIR64202.1  52 LTTTCNIRCKGCWYFEGGFDAAVPETSDPVVISDFVDSL-VARGVTQATLIGGEPTLVLNRVVPFVERLP------YVTISTNGIRP 131
                  5789*************99999*****************.8999*************8887776666655......58888888887 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.8e-07    0.0011       7      78 ..      44     118 ..      38     127 .. 0.74
   2 ?   -2.7   0.0       1.1   6.6e+03      55      64 ..     143     152 ..     139     155 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.8e-07
     Fer4_12   7 rl....slfvsgCnlsCkgCfnketw.sfksgkeftkelleeiiedlkkesiegltllGGEPllpenaeallelvke 78 
                 r+    +++++ Cn++CkgC   e   +    +  +  ++   +++l  + +++ tl+GGEP l    + ++++v++
  KIR64202.1  44 RVtaseVHLTTTCNIRCKGCWYFEGGfDAAVPETSDPVVISDFVDSLVARGVTQATLIGGEPTL--VLNRVVPFVER 118
                 544455788999*******975555413333444458889999999999***************..55556666665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.1
     Fer4_12  55 gltllGGEPl 64 
                  ++l+GG Pl
  KIR64202.1 143 AISLFGGGPL 152
                 699*****98 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   7.3e-07    0.0044       5      74 ..      53     119 ..      50     130 .. 0.85
   2 ?   -1.1   0.0      0.34   2.1e+03      49      59 ..     143     152 ..     136     156 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 7.3e-07
     Fer4_14   5 lsgCnlsCkgCd.nketwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrl 74 
                 +  Cn+ CkgC   +  ++  + + ++  ++++ +++l ++ + ++  +l GGeP +    + ++++v+rl
  KIR64202.1  53 TTTCNIRCKGCWyFEGGFDAAVPETSDPVVISDFVDSLVARGVTQA--TLIGGEPTLV--LNRVVPFVERL 119
                 678********7689999*****************99999999555..*******955..77788888876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.34
     Fer4_14  49 qglvltGGePL 59 
                 + ++l GG PL
  KIR64202.1 143 A-ISLFGGGPL 152
                 4.99******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2957.17
//
Query:       KIR64203.1  [L=524]
Description: hypothetical protein TK50_00215 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-84  283.1   0.0    3.5e-84  282.8   0.0    1.0  1  AMP-binding    AMP-binding enzyme
    9.2e-06   26.6   0.1    2.4e-05   25.2   0.1    1.8  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.8   0.0   3.9e-88   3.5e-84       2     422 ..      21     416 ..      20     417 .. 0.89

  Alignments for each domain:
  == domain 1  score: 282.8 bits;  conditional E-value: 3.9e-88
                  HHHHHHSTTSEEEEE.CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEE CS
  AMP-binding   2 eeqaaktpdkvalvd.sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvl 98 
                  +++a+++ d++ lv  + +g+t +++++   ++  Aa L ++Gv +g rVa++++ns    ++++++  a  v+vplnp++++ el  +l+++ + ++
   KIR64203.1  21 RAAAERHGDRPYLVPaEPGGRTASFADVLTFTRGCAALLDEHGVPPGGRVAVVMHNSSLTALLFIGVIAAQRVLVPLNPKSGPGELDALLAHCAPALV 118
                  56899999*****8898889********************99******************************************************** PP

                  EETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHC CS
  AMP-binding  99 iatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletr 196
                  +a    +      +++ak       + +d++e+l ++ l   +  + +    + ++   + d a i+YTSG+TG PKGV+lshr+l+an  ++   + 
   KIR64203.1 119 LA---PT------PVTAKIGPGPRRVAVDDAEALLADVLARGAAYQGDL---TAPRDGGAGD-AEIVYTSGSTGVPKGVVLSHRSLLANSLAM--VKW 201
                  *3...22......223333344455677777777776666666555443...2444556666.99************************8886..333 PP

                  SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS- CS
  AMP-binding 197 fklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggep 294
                   ++++ddv+l ++pl+h+ g+ + +l++l sG++ v+++ ++al   +++++++++++t + +v++ l  l+e +++          sl+ vl+gg++
   KIR64203.1 202 ADAGPDDVFLNVVPLFHAGGQGFPTLTPLWSGGRSVCVRSETALV--RFWHYVDRHRPTWTLVVNAYLANLVERPERP------ATDSLKGVLAGGSA 291
                  44689**********************************998855..577***********************87777......6779********** PP

                  EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEET CS
  AMP-binding 295 lspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafdse 392
                  l pel+++f+++fg  v+++YG+TE+t  +tv p++++   + s+G p+p ++v++v ++ g+ vp ge Ge+l++gp+++  Y   pe+ta+++d  
   KIR64203.1 292 LGPELIHRFEDTFGIGVYQVYGMTEMTSLTTVEPRDRRPGEPRSAGLPVPFARVRVVGPD-GRDVPAGENGEVLLSGPSIFTRYEAAPELTAKRLD-- 386
                  ******************************9877777878899****************9.**********************************9.. PP

                  CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 393 grwlrTGDlgrldedGyleivgRkkdlikl 422
                  ++w+r+GDlg+lde+G+l iv+R++ ++++
   KIR64203.1 387 DGWVRSGDLGHLDERGELSIVDRIDSMVIV 416
                  57**************************98 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1   2.7e-09   2.4e-05       1      76 []     425     505 ..     425     505 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 2.7e-09
                    HHHHHHHSSTTEEEEEEE-----TTS.---EEEEEE---.---HHHHHHHHHHHHT-TTTS-SEEEE-S-.....--B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkG.ealvafVvlkdg.sealeeeLkahvrkelgpyavpkkvvfvde.....lpktrsGK 76 
                    e+E+a+    +V++a+V + p++v+G e ++++  l +g + a +++ +a + + l p++vp+++v+++e     +p+t  GK
     KIR64203.1 425 EIENAVPHLAGVEDAVVAALPHPVTGvELILVYTLL-PGaV-ADDDAWRATLLRFLSPFKVPRRFVVLKEigvdaFPRTPLGK 505
                    8*************************5555555555.5743.246999999999*********99998876666688888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3414.40
//
Query:       KIR64204.1  [L=73]
Description: hypothetical protein TK50_00220 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-14   52.2   0.1    6.6e-14   52.0   0.1    1.1  1  PP-binding  Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.1   3.7e-18   6.6e-14       5      67 .]       3      62 ..       1      62 [. 0.92

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 3.7e-18
  PP-binding  5 elvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67
                ++ a+vl++++   +pd+dl  lG+DS++ave++ ++e ++gv++ +  + ++pt+++l++++
  KIR64204.1  3 SICADVLNRSTL--GPDEDLVALGMDSVAAVEIVTRVETAYGVDVVDVIF-DNPTVNRLCDLV 62
                799******985..5****************************9988866.*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 503.08
//
Query:       KIR64205.1  [L=283]
Description: SAM-dependent methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-96  322.0   0.0    3.4e-96  321.8   0.0    1.0  1  Methyltransf_19  S-adenosyl methyltransferase
  ------ inclusion threshold ------
      0.029   14.2   0.0      0.047   13.5   0.0    1.3  1  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_19  S-adenosyl methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.8   0.0  3.8e-100   3.4e-96       5     268 .]      17     283 .]      13     283 .] 0.95

  Alignments for each domain:
  == domain 1  score: 321.8 bits;  conditional E-value: 3.8e-100
  Methyltransf_19   5 srridtsrphsaRvydylLGGkdnypvDreaaeallkalpelvkvaranRaflrRavrvlaeeaGirqflDiGtGlPtednvHqvaqrvaPesR 98 
                      +  +dt+rp++aRvydy+LGGkdn++vDr+aa+ +++++p+  ++  a RaflrR+vr+la+eaGirqflDiG+GlPt+ nvH++a+ v P++R
       KIR64205.1  17 PPGVDTTRPSIARVYDYYLGGKDNFAVDRQAAQMAMQVTPDGPEAGLACRAFLRRSVRFLAAEAGIRQFLDIGSGLPTQGNVHEIAHEVDPNAR 110
                      6679****************************************************************************************** PP

  Methyltransf_19  99 vvYvDnDPivlaharallestpeGatdyieaDlrdpeeilespearevlDldrPvAlllvailhfveDeedaaaivrelvdalpaGsllvlshl 192
                      vvYvDnDP++lah+rall++     t+++ +D r+pee+l++ + r+++D+d+Pv lll+ailh+++De+d+a++ r+lv+alp+Gs+l++sh+
       KIR64205.1 111 VVYVDNDPMALAHGRALLADART--TTVLGGDARRPEELLAQLTERKLIDFDQPVGLLLLAILHHLNDEDDPAGVARRLVAALPSGSYLAISHF 202
                      *******************9998..********************************************************************9 PP

  Methyltransf_19 193 te..dlnpeev...ekvekvykeaaaplrlRsrkeverffdglelvePGlvevteWrpdeeaeeeeteeeisvyagvarka 268
                       +  d +pe     ++vekv++++  + r+R+r+e+  ff +lel+ PGlv+ +eW+pd e+  ++t++  ++++gvark+
       KIR64205.1 203 HDpgDAQPEVSeraRAVEKVFNATLGTGRWRTREEIMGFFGDLELLPPGLVPLAEWHPDGEEDPKQTATYHTIVGGVARKP 283
                      8633666664433388999************************************************************96 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.3e-06     0.047       7     139 ..      85     229 ..      83     243 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.3e-06
  Methyltransf_31   7 vlDlGCG..tGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieelekl.led...ekfDl......ilsnevl...n 85 
                      +lD+G+G  t   ++e+a+e+ p+a+vv +D+++ a+ + r+ +++   +  ++  gd+   e+l  +    + +D+      +l  ++l   n
       KIR64205.1  85 FLDIGSGlpTQGNVHEIAHEVDPNARVVYVDNDPMALAHGRALLADARTT--TVLGGDARRPEELlAQLterKLIDFdqpvglLLL-AILhhlN 175
                      6788887442234688999***********************99988777..8899999885555444444433333334442222.3335558 PP

  Methyltransf_31  86 aladpdkileeiervlkpggilliedpr....llaelpakveeeskayevvegakigt 139
                      +  dp+ + +++  +l +g++l+i++++    ++ e+ + +++ +k    v+ a+ gt
       KIR64205.1 176 DEDDPAGVARRLVAALPSGSYLAISHFHdpgdAQPEVSERARAVEK----VFNATLGT 229
                      88888888889999999*********99444433333344443333....44455444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2184.30
//
Query:       KIR64206.1  [L=355]
Description: gluconolactonase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-43  147.3   0.0    7.3e-43  146.9   0.0    1.2  1  SGL           SMP-30/Gluconolactonase/LRE-like region
    2.1e-07   30.9   0.0     0.0014   18.7   0.0    2.9  2  Str_synth     Strictosidine synthase
    2.6e-05   24.4   0.0    0.00028   21.0   0.0    2.7  3  Arylesterase  Arylesterase
    7.4e-05   22.2   0.1       0.11   11.7   0.0    2.2  2  Lactonase     Lactonase, 7-bladed beta-propeller
  ------ inclusion threshold ------
      0.026   14.5   0.0       0.89    9.4   0.0    2.4  2  Phytase-like  Esterase-like activity of phytase
      0.029   14.4   4.7        9.6    6.5   0.2    4.3  4  NHL           NHL repeat
       0.11   12.5   0.4         35    4.5   0.0    3.6  4  PD40          WD40-like Beta Propeller Repeat
       0.45   11.0   3.1        3.3    8.3   0.1    3.4  4  Ldl_recept_b  Low-density lipoprotein receptor repeat class B


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   0.0   3.2e-46   7.3e-43       3     244 ..      85     335 ..      83     337 .. 0.87

  Alignments for each domain:
  == domain 1  score: 146.9 bits;  conditional E-value: 3.2e-46
         SGL   3 EGpvwdeeegaLlwv.........DilgqrihrldpatgketvldtpesvGaiaprkd.grlvvasksglall..dlasgeletladeeedekpllrfN 89 
                 EGpvw +++g+Ll +          ++ ++i r++p  + +t+l  ++s+G++   +d  +lv+a ++++ +    +++ +  ++a++ +++ + +++N
  KIR64206.1  85 EGPVWLADRGYLLVSdmgaatgpeRVQPSTIRRFTPPATFDTFLANSGSNGLALS-PDgRQLVAATHDQRSVSsyRIDDLTRGVVAANYQGR-AFNSPN 181
                 9**************333333332233445666666666666699999*******.663888888888888887767777778888888788.****** PP

         SGL  90 DgvvdpdGrlwfGtmgdeeakgeev....galyrldpdgklervlddltipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkgeg 184
                 D++v +dG ++f+++++++ +  ++    ++++r++++ ++++v d l  pNG+a+spdg tlY+    ++ki++y v+ +g+  + r vf++   g  
  KIR64206.1 182 DVAVRSDGVVYFTDPNFQRGARADQmsgrTSVFRVSGG-QVSLVDDALRQPNGIALSPDGATLYVGAYGENKIYKYAVAPDGS-TGPRSVFVNYVGG-- 276
                 ******************99999889988888888888.***************************************88887.9999999887777.. PP

         SGL 185 epDGlavDaeGnvwvAvwgggkvvrfdpdGklieeiklpakrvtscaFgGpdlrtLyits 244
                  pDG+++D+ Gnv+ A   +g v++++p G  +++++   + +t++aFgG+d+rtLy+ts
  KIR64206.1 277 -PDGATIDCAGNVYWASGFDGLVHVYSPTGVELGTVRSGSTGTTNVAFGGSDRRTLYVTS 335
                 .9*************************************99******************9 PP

>> Str_synth  Strictosidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00098       2.2      57      86 ..     131     160 ..     126     162 .. 0.87
   2 !   18.7   0.0   6.4e-07    0.0014       1      85 [.     181     257 ..     181     260 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00098
   Str_synth  57 yfanGialsedgsfvlvcetamkrisrywi 86 
                 +++nG+als+dg  ++ +   ++ +s y i
  KIR64206.1 131 SGSNGLALSPDGRQLVAATHDQRSVSSYRI 160
                 579*************99999988888865 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 6.4e-07
   Str_synth   1 daldvdeetgvlyftdsSskydrrqvllallegdktGrllkydkstkvvkvlldkLyfanGialsedgsfvlvcetamkrisryw 85 
                 +++ v ++ gv+yftd    ++r          +  Gr   +  s  +v  + d L  +nGials+dg  + v     ++i +y 
  KIR64206.1 181 NDVAVRSD-GVVYFTDPN--FQR-----GARADQMSGRTSVFRVSGGQVSLVDDALRQPNGIALSPDGATLYVGAYGENKIYKYA 257
                 67888888.999999963..444.....44567889*************99999******************9999999999995 PP

>> Arylesterase  Arylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.4   9.9e+03      56      71 ..     133     148 ..     130     159 .. 0.74
   2 !   21.0   0.0   1.3e-07   0.00028      35      84 ..     210     259 ..     192     261 .. 0.90
   3 ?   -1.3   0.0       1.1   2.5e+03      62      72 ..     325     335 ..     295     341 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.4
  Arylesterase  56 anGInidadkkyiyva 71 
                   +nG+ +++d + +  a
    KIR64206.1 133 SNGLALSPDGRQLVAA 148
                   6999999999987555 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 1.3e-07
  Arylesterase  35 wtavvYyspsevkvvasglssanGInidadkkyiyvadilresihvmkkh 84 
                    t+v   s+++v+ v + l  +nGI +++d   +yv+   +++i+ + ++
    KIR64206.1 210 RTSVFRVSGGQVSLVDDALRQPNGIALSPDGATLYVGAYGENKIYKYAVA 259
                   5777778999************************************9886 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.1
  Arylesterase  62 dadkkyiyvad 72 
                    +d++ +yv++
    KIR64206.1 325 GSDRRTLYVTS 335
                   36888888887 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1   0.00051       1.1     248     280 ..     135     167 ..     108     193 .. 0.61
   2 !   11.7   0.0     5e-05      0.11      63     128 ..     211     271 ..     176     282 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00051
                 EEEE-TTSSEEEEEETSSTEEEEEEE-TTT--E CS
   Lactonase 248 eIrlspdgkflyvSnRgadsiavfavdeadgtl 280
                  ++lspdg+ l+++   + s++ +++d+ +  +
  KIR64206.1 135 GLALSPDGRQLVAATHDQRSVSSYRIDDLTRGV 167
                 455566666666666666666666665544444 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 5e-05
                 EEEEEEETTTTEEEEEEEEE.SSS-EEEEEE-TTSSEEEEEETTTTEEEEEEB.TTSEBESECEEE CS
   Lactonase  63 vsafaidkdsgeltllnkvssegaspchlsvdedgkllavAnYsggsvsvfpldadgslkeasqvl 128
                  s f+++   g+++l++ +     +p  +++++dg  l+v  Y+++++  ++++ dgs +++s ++
  KIR64206.1 211 TSVFRVSG--GQVSLVDDAL---RQPNGIALSPDGATLYVGAYGENKIYKYAVAPDGSTGPRSVFV 271
                 45555553..4444444444...5555666666666666666666666666666666666666555 PP

>> Phytase-like  Esterase-like activity of phytase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0004      0.89     101     144 ..     115     151 ..      85     165 .. 0.82
   2 ?    2.5   0.0     0.051   1.1e+02      70      95 ..     231     257 ..     171     299 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0004
  Phytase-like 101 lrelplpaellpaaspdaglrrnrGfEglalspdgrkLyaalEs 144
                   +r+++ pa +           +n G  glalspdgr+L+aa+ +
    KIR64206.1 115 IRRFTPPATF-------DTFLANSGSNGLALSPDGRQLVAATHD 151
                   4555555555.......77889******************9865 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.051
  Phytase-like  70 pEgiav.apdgtfwvssEggpfilefd 95 
                   p gia+ +++ t++v+  g++ i+++ 
    KIR64206.1 231 PNGIALsPDGATLYVGAYGENKIYKYA 257
                   556666555556677776667776665 PP

>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.84   1.9e+03       5      14 ..     134     143 ..     134     148 .. 0.77
   2 ?    6.5   0.2    0.0043       9.6       1      18 [.     177     194 ..     177     197 .. 0.87
   3 ?    5.9   0.0    0.0063        14       1      13 [.     228     240 ..     228     246 .. 0.86
   4 ?   -0.5   0.2      0.67   1.5e+03       3      16 ..     276     289 ..     275     289 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.84
                 EEEEEETTTE CS
         NHL   5 hGvavdsnGd 14 
                 +G+a++++G+
  KIR64206.1 134 NGLALSPDGR 143
                 69****8886 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0043
                 BSSEEEEEEETTTEEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVa 18 
                 fn+P++vav s+G +y +
  KIR64206.1 177 FNSPNDVAVRSDGVVYFT 194
                 99*******999999855 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0063
                 BSSEEEEEEETTT CS
         NHL   1 fnyPhGvavdsnG 13 
                 +++P+G+a++++G
  KIR64206.1 228 LRQPNGIALSPDG 240
                 789*******877 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.67
                 SEEEEEEETTTEEE CS
         NHL   3 yPhGvavdsnGdiy 16 
                  P G ++d+ G++y
  KIR64206.1 276 GPDGATIDCAGNVY 289
                 58999*******98 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.016        35      14      24 ..     136     146 ..     128     146 .. 0.80
   2 ?    3.7   0.0     0.028        63      13      24 ..     233     244 ..     232     245 .. 0.87
   3 ?   -2.4   0.0       2.3   5.2e+03      16      22 ..     258     264 ..     257     264 .. 0.79
   4 ?   -1.5   0.1       1.2   2.6e+03      19      30 ..     327     338 ..     326     344 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.016
                 EEE-TTSSEEE CS
        PD40  14 PsfSPDGkrla 24 
                  ++SPDG+ l+
  KIR64206.1 136 LALSPDGRQLV 146
                 589*****986 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.028
                 EEEE-TTSSEEE CS
        PD40  13 aPsfSPDGkrla 24 
                 ++++SPDG +l+
  KIR64206.1 233 GIALSPDGATLY 244
                 689*****9988 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.3
                 E-TTSSE CS
        PD40  16 fSPDGkr 22 
                 + PDG++
  KIR64206.1 258 VAPDGST 264
                 68***86 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.2
                 TSSEEEEEEECT CS
        PD40  19 DGkrlaFsSdRg 30 
                 D ++l+ +S  +
  KIR64206.1 327 DRRTLYVTSGPT 338
                 899999999766 PP

>> Ldl_recept_b  Low-density lipoprotein receptor repeat class B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.22     5e+02      10      40 ..     152     185 ..     150     185 .. 0.79
   2 ?    8.3   0.1    0.0015       3.3      15      40 ..     212     236 ..     189     237 .. 0.79
   3 ?   -3.3   0.0       5.9   1.3e+04       1       5 [.     286     290 ..     286     291 .. 0.81
   4 ?   -3.5   0.0       7.2   1.6e+04      21      27 ..     325     331 ..     323     331 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.22
                   TTEEEES-STTS---EEEE-SS....-S-EEEEEE CS
  Ldl_recept_b  10 ldasisvadlnGshrktlfqed....lqnPrgiAv 40 
                   ++ s+s+ ++++  r +++ +     ++ P+++Av
    KIR64206.1 152 QR-SVSSYRIDDLTRGVVAANYqgraFNSPNDVAV 185
                   66.777788888887777777788889******98 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0015
                   ES-STTS---EEEE-SS-S-EEEEEE CS
  Ldl_recept_b  15 svadlnGshrktlfqedlqnPrgiAv 40 
                   sv ++ G+    l++++l+ P+giA+
    KIR64206.1 212 SVFRVSGGQ-VSLVDDALRQPNGIAL 236
                   555667777.899************7 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 5.9
                   TEEEE CS
  Ldl_recept_b   1 gklYW 5  
                   g++YW
    KIR64206.1 286 GNVYW 290
                   689** PP

  == domain 4  score: -3.5 bits;  conditional E-value: 7.2
                   S---EEE CS
  Ldl_recept_b  21 Gshrktl 27 
                   Gs+r+tl
    KIR64206.1 325 GSDRRTL 331
                   899**97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2476.42
//
Query:       KIR64207.1  [L=567]
Description: glucose dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-64  215.9   0.1    1.3e-63  215.3   0.1    1.2  1  GSDH             Glucose / Sorbosone dehydrogenase
    5.4e-09   36.3   3.8    2.3e-06   27.8   0.5    2.5  2  fn3              Fibronectin type III domain
    0.00066   19.9   3.2       0.51   10.7   0.5    2.5  2  RGI_lyase        Rhamnogalacturonan I lyases beta-sheet domai
  ------ inclusion threshold ------
      0.039   13.6   3.1       0.88    9.2   0.7    2.2  2  ChitinaseA_N     Chitinase A, N-terminal domain
      0.088   12.0   0.0       0.14   11.3   0.0    1.2  1  Phosphoesterase  Phosphoesterase family
       0.17   11.7   0.7          1    9.2   0.1    2.4  3  SmpA_OmlA        SmpA / OmlA family
       0.17   12.3   0.0       0.44   10.9   0.0    1.7  1  DUF2369          Uncharacterised conserved protein (DUF2369)
       0.24   11.7  12.2        2.7    8.3   0.1    3.0  2  Big_6            Bacterial Ig domain


Domain annotation for each model (and alignments):
>> GSDH  Glucose / Sorbosone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3   0.1   5.8e-67   1.3e-63       2     325 ..     252     545 ..     251     551 .. 0.93

  Alignments for each domain:
  == domain 1  score: 215.3 bits;  conditional E-value: 5.8e-67
                 S-EEEEEE-TTS-EEEEET.TTEEEEEE.TTEE.EEEEE-..----STT-SEEEEEE-TTTTTS-EEEEEEEE-...TTSSEEEEEEEEE-SS..-EEE CS
        GSDH   2 ehPwslaflpdgrlLvter.sGrlrlvkadgklkepiagvp.evvakgqgGlldvalhpdfaenrlvYltyaeaeeekggagtavararlsedeaaled 98 
                 + Pw+l  l dg++L   r   ++  ++ dg+ k+ i  vp +  ++g+gG+l++a++++fa++r++Y+++++a      ++++++r+r +++  + ++
  KIR64207.1 252 DLPWGLVQLSDGTVLYGRRdLFDVVAMNPDGTDKRSIGSVPnAAGTNGEGGVLGLAVASTFATDRWLYIYHTTA------TDNRIVRMRYDGT-LQTSS 343
                 57*****************557999999*************77789**************************55......6789******888.89999 PP

                 EEEEEEEE---TT-------EEE-TTS-EEEE---TT-GGGGG-TT-SSSEEEEE-TTSSB-TT-TTTT-TTS-TTEEEE--SCE---EE-TTT--EEE CS
        GSDH  99 levifrqepkvesgahfGsrlafgpdgtLfvtvGdrskreeaqdlsselGkilrlnkdGsvpadnpfvgkagakpeiwsyGhRnpqGlaldpdtgeLwe 197
                 l+v+++ +p+  ++ h+G+rl fgpdg+L+ ++Gd +++++aqd+++ +Gk+lr+++dG+vpadnpf       +++wsyGhRnpqGla+d++ g+L+e
  KIR64207.1 344 LQVLVTGIPR--NKYHNGGRLRFGPDGMLYAATGDGQTPDRAQDVNDLAGKVLRIRPDGTVPADNPFG------NQVWSYGHRNPQGLAFDSR-GRLFE 433
                 **********..889****************************************************5......79****************9.***** PP

                 EEE--SSSEEEEEE-TT-B--TTT-S......S-.....-S-TTS---SEEETT-.--EEEEEEE........TTEEEEEETTTTEEEEEEEEEEEEEE CS
        GSDH 198 sEhGprggDelnlieaGknYGWplvsygeeYsgkkigesetreglekpvlvwtps.iapsglafytgdafpewkgdllvggLksqsllrleldegekvv 295
                 +E+G++  De n+i +G+nYGWp  +      g+ +    +++++++pv ++  +  + sgla+++   +        ++ L+ ++++r  ++ g++++
  KIR64207.1 434 QEFGNNVMDETNIIVRGGNYGWPACE------GT-V-GDCANPNYRAPVRTYPVAdASCSGLAIVRDVVY--------LACLRGNRMYREVIS-GDALT 515
                 ************************99......33.2.34789**********9998999****9976555........9*************9.77999 PP

                 EEEEEEESS-.-EEEEEE-TTS-EEEEE-T CS
        GSDH 296 eeerlleelgeriRdVeqgpdGalyvltde 325
                 + ++++  + +r+R Ve + dG+l+++t+ 
  KIR64207.1 516 DVQQYFVGTYSRLRTVEPTIDGNLWLTTST 545
                 99999999999****************984 PP

>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.2    0.0007       1.6       2      35 ..      50      82 ..      49     111 .. 0.87
   2 !   27.8   0.5     1e-09   2.3e-06       1      80 [.     144     220 ..     144     226 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0007
                CECEEEEEEESSSEEEEEEE-CSSSSSTEEEEEE CS
         fn3  2 aPsnlsvsevtstsltvsWeppkdgggpitgYev 35
                +P+nl+ s  t  s+t++W++ +  +  +t+Y v
  KIR64207.1 50 PPTNLRSSRLTCQSVTLTWSAAR-DDVGVTNYDV 82
                8*********************5.7777788877 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 1e-09
                 TCECEEEEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTSTEEEEEECSTSSEEEEESSSTTEEEEEEEEEEETSE CS
         fn3   1 saPsnlsvsevtstsltvsWeppkdgggpitgYeveyrekgseeewneftvprtttsvtltgLkpgteYevrVqavnggg 80 
                 s P+nl +++ ++t ++++W++  + +  +t+Y v    ++ ++++ + t+p+ t ++t tgL ++t+++ +V a+ ++g
  KIR64207.1 144 STPTNLAATA-NGTDVRLTWSAA-TDNVAVTRYDVLRGGTTVGSVTGTATNPPAT-TFTDTGLAANTQFSYTVVARDAQG 220
                 579***9988.999*********.7**********99888888877777788877.9*******************9997 PP

>> RGI_lyase  Rhamnogalacturonan I lyases beta-sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00063       1.4      17      51 ..      62      96 ..      58     131 .. 0.78
   2 !   10.7   0.5   0.00023      0.51      11      83 ..     150     226 ..     147     231 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00063
                TEEEEE--B-TTS-TT-EEEEEETTEE-CSSSB-S CS
   RGI_lyase 17 egvfvsWRllgteeeevaFnvYrdgkkinsapitd 51
                ++v ++W    ++   ++++vY dg+ ++s   ++
  KIR64207.1 62 QSVTLTWSAARDDVGVTNYDVYHDGQLVTSVGGST 96
                678999**9999999999**********6644433 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00023
                 EEEEETTEEEEE--B-TTS-TT-EEEEEETTEE-CSSSB-S....SSEEEETT--TT-EEEEEEEETTEEECE---E CS
   RGI_lyase  11 vAvkteegvfvsWRllgteeeevaFnvYrdgkkinsapitd....stnylDakgtasskYtvkavvngkeqeaseev 83 
                  A  + ++v ++W    ++ + + ++v r g+ + s + t     +t ++D+   a+ +++ + v ++ + +as++ 
  KIR64207.1 150 AATANGTDVRLTWSAATDNVAVTRYDVLRGGTTVGSVTGTAtnppATTFTDTGLAANTQFSYTVVARDAQGNASTAS 226
                 45566677999**99888888888**********77655532233699****9887777666666665555555443 PP

>> ChitinaseA_N  Chitinase A, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.7   0.00039      0.88      40     107 ..      64     131 ..      60     134 .. 0.83
   2 ?    4.4   0.1     0.012        28      30     105 ..     148     231 ..     134     239 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00039
  ChitinaseA_N  40 vsvewnvWsGeag.dkakvlldgvkvaegaasakesatfkvkkgGryqlevelCdaeGCsksapkeivv 107
                   v+++w+    ++g +++ v+ dg+ v++   s   +at++v +g  +   v++ da G  + a+++++v
    KIR64207.1  64 VTLTWSAARDDVGvTNYDVYHDGQLVTSVGGS-TLTATLTVAQGVTWGWYVNARDAAGNVSQASATLTV 131
                   788888888887746799********988777.7899*********************77777766665 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.012
  ChitinaseA_N  30 slvkvkdeaevsvewnvWsGeag.dkakvlldgvkva..egaasakesatfk...vkkgGryqlevelCdaeG..Csksapkei 105
                   +l  + +  +v+++w+  + +++ +++ vl  g++v   +g+a++   +tf+   +    +++ +v + da+G   ++s+p+++
    KIR64207.1 148 NLAATANGTDVRLTWSAATDNVAvTRYDVLRGGTTVGsvTGTATNPPATTFTdtgLAANTQFSYTVVARDAQGnaSTASTPVTV 231
                   6777888999*****998887653789999999999855666664444455422266778999999999999944445555544 PP

>> Phosphoesterase  Phosphoesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.1e-05      0.14     138     200 ..      67     136 ..      59     161 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.1e-05
  Phosphoesterase 138 lisgtsdpsGteggpsladpkktvlkgftqktigerLs.ekgvswaiYqealdnlakskva........pfn 200
                       +s++ d+ G    + ++  + +++ ++  +t+  +L+ ++gv+w++Y +a d++ +++ a        pf+
       KIR64207.1  67 TWSAARDDVGVTNYDVYH--DGQLVTSVGGSTLTATLTvAQGVTWGWYVNARDAAGNVSQAsatltvtpPFC 136
                      688999899988888877..99***************9467**********955544444333444445555 PP

>> SmpA_OmlA  SmpA / OmlA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         2   4.4e+03      21      48 ..      89     119 ..      87     131 .. 0.64
   2 ?    9.2   0.1   0.00046         1      31      48 ..     309     326 ..     306     343 .. 0.78
   3 ?   -1.1   0.0      0.76   1.7e+03      31      41 ..     405     415 ..     400     427 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2
                 HHHHH-S-SEE.-SSSSS.EEE.EEEEETTE CS
   SmpA_OmlA  21 VryllGsPslt.dtfdpn.rwd.Yvynfkrg 48 
                 V++++Gs +++  t+ +  +w  Yv  ++  
  KIR64207.1  89 VTSVGGSTLTAtLTVAQGvTWGwYVNARDAA 119
                 7788888888854444446999888776664 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00046
                 E-SSSSSEEEEEEEETTE CS
   SmpA_OmlA  31 tdtfdpnrwdYvynfkrg 48 
                 ++tf ++rw Y+y+++  
  KIR64207.1 309 ASTFATDRWLYIYHTTAT 326
                 589***********9985 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.76
                 E-SSSSSEEEE CS
   SmpA_OmlA  31 tdtfdpnrwdY 41 
                 +++f+++ w Y
  KIR64207.1 405 DNPFGNQVWSY 415
                 689*******9 PP

>> DUF2369  Uncharacterised conserved protein (DUF2369)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0002      0.44       7      45 ..     196     242 ..     192     269 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0002
     DUF2369   7 tkvtlseLkpdtqYyfdVFvvdqkrntssaytgttaqt........r 45 
                 t++t ++L  +tq+ ++V ++d + n+s+a t  t++t         
  KIR64207.1 196 TTFTDTGLAANTQFSYTVVARDAQGNASTASTPVTVRTgsactsavC 242
                 6778899******************************9554444440 PP

>> Big_6  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1    0.0012       2.7      51      81 ..     100     131 ..      76     133 .. 0.80
   2 ?    4.3   7.7     0.022        50       2      78 ..     143     227 ..     143     232 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0012
       Big_6  51 tlepaqangetlsvvatDaagntSda.atvta 81 
                 tl+ aq       v a Daagn+S+a at+t+
  KIR64207.1 100 TLTVAQGVTWGWYVNARDAAGNVSQAsATLTV 131
                 566666666667899**********9666665 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.022
       Big_6   2 Peaptdlavsedgtt..ltGkaeagatVtvkda....dgtvlgtgtadadGeFsvtlep...aqangetlsvvatDaagntSdaat 78 
                 P++pt+la +++gt   lt +a +   V v++     +gt++g++t +a+   + t++    a +++ + +vva Da+gn+S+a t
  KIR64207.1 143 PSTPTNLAATANGTDvrLTWSAAT-DNVAVTRYdvlrGGTTVGSVTGTATNPPATTFTDtglAANTQFSYTVVARDAQGNASTAST 227
                 888999998888887334544433.3466655423446777766544444444444432000334555679***********9954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 4348.72
//
Query:       KIR64208.1  [L=865]
Description: hypothetical protein TK50_00255 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-20   73.2   0.5    5.4e-20   71.8   0.5    1.6  1  Peptidase_S8  Subtilase family
    0.00071   20.3  11.0        0.5   11.2   0.6    4.8  4  Big_7         Bacterial Ig domain
  ------ inclusion threshold ------
      0.097   12.5   7.3        1.8    8.4   1.3    3.6  3  PKD           PKD domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.5     9e-24   5.4e-20     110     283 ..     362     528 ..     353     551 .. 0.88

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 9e-24
                   HHHHHHHHHH.CT-SEEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEEESTTSSB-TT--B CS
                   xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 110 liraieeaae.dkvdvinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvgayttegkiapfSsr 205
                   ++r +e+aae +++dv+n+s++ + +l+k++ s  +   ++++ + g l+v+SaGN+        +g + + p+ s+ v+ vg+++t++ +   S+ 
    KIR64208.1 362 VLRRLEKAAEaSHPDVVNLSFTRDVNLGKSSASKWTDRRMKHIRDTGALIVSSAGNDT----ANIDGDTLYVPCESTHVMCVGGMRTDATLDGMSNF 454
                   678999****************999999999887666566666699************....3368******************************* PP

                   -TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS-E CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 206 GpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAqd 283
                   G s d  l  ++  +G   v   +  +n++ +++   ++ GTS+A+P++ g+aAl++ a p+lt+++vr++l  tA  
    KIR64208.1 455 GTS-D--LTTSVEIYGPMCVNGLKDPGNPAVNKTH-SQFCGTSAAAPFVGGVAALVMAADPSLTAAQVRDILNDTAHV 528
                   *97.5..5667777777888999999999999986.99**************************************54 PP

>> Big_7  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.6   8.4e-05       0.5       1      28 [.     559     587 ..     559     640 .. 0.82
   2 ?   -0.4   0.3      0.33     2e+03      14      28 ..     630     645 ..     617     651 .. 0.54
   3 !    8.8   0.7   0.00045       2.7       2      68 ..     648     734 ..     646     736 .. 0.85
   4 ?    3.4   0.1     0.023   1.4e+02       1      30 [.     744     780 ..     744     801 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.4e-05
                 XEEEEEE--TT--EB.TSEEEEEEEEE-S CS
       Big_7   1 PtvtitsPangatvs.ggtvtisasAsdd 28 
                 P v+i++P+ g+ v  g++v++ + A+d 
  KIR64208.1 559 PAVSISAPTTGQHVGvGQSVDLWGKATDF 587
                 99*************************96 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.33
                 EB.TSEEEEEEEEE-S CS
       Big_7  14 vs.ggtvtisasAsdd 28 
                 +  +g+ t+s+++ d+
  KIR64208.1 630 LGrTGSATVSVTVVDS 645
                 3334666666666665 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00045
                 EEEEEE--TT--EB.TSEEEEEEEEE-S...S-E....EEEEEEETTEE............EEEE-SSSEEEEEE--....SEEEEE CS
       Big_7   2 tvtitsPangatvs.ggtvtisasAsdd...ggv....skVefyvdgtl.g..........lgtdtsapysltwttta.ltagthtl 68 
                 t +i+sP  g t+  g++v++ ++  d+   g v    ++ +++ +gt+ +           g+ t++ y++t+t+    ++ + t+
  KIR64208.1 648 TAAIISPPVGLTLApGQSVSLVGTSHDPdafGPVpdaeASWTVRRGGTVvHqqtghqallpAGKVTAGSYTATFTAGGaSAQRSFTV 734
                 578*************************776666999988899999999889999999*****************975344444444 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.023
                 XEEEEEE--TT--EB.TS....EEEEEEEEE-S..S- CS
       Big_7   1 PtvtitsPangatvs.gg....tvtisasAsdd..gg 30 
                 Pt tit Pa+   +s  +     v++ ++A+d   g+
  KIR64208.1 744 PTATITKPAAALDLSvVDgkpkVVAFAGTATDVedGA 780
                 9********9885554333577889999999866555 PP

>> PKD  PKD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0021        13      44      68 ..     608     632 ..     565     635 .. 0.72
   2 ?    8.4   1.3   0.00031       1.8       5      62 ..     657     723 ..     652     731 .. 0.86
   3 ?   -2.3   0.1      0.68   4.1e+03      19      35 ..     774     794 ..     767     806 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0021
                 TEEEEEE-SSEEEEEEEEEE-SS-E CS
         PKD  44 ptvthtYlspGeYeVtvtasnavgs 68 
                 + +    lspG++++t +a++ +g+
  KIR64208.1 608 SQTFVPSLSPGTHVITAKATDGLGR 632
                 444466789*************997 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00031
                 -S--BSSEEEEEEEES.-......SS-SEEEEE--SS.--EEEEETTEEEEEE-S..SEEEEEEEEE CS
         PKD   5 ptvlvpgatvaftaavpd......ganvtysWdfgdg.svvqvlseptvthtYls..pGeYeVtvta 62 
                 +  l+pg++v + ++++d        ++  sW++  g +vv +++++ + +   +  +G+Y++t ta
  KIR64208.1 657 GLTLAPGQSVSLVGTSHDpdafgpVPDAEASWTVRRGgTVVHQQTGHQALLPAGKvtAGSYTATFTA 723
                 6789************554577777899999***9999***********99987777*******998 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.68
                 ES..-SS..-SEEEEE-.-SS CS
         PKD  19 av.pdga..nvtysWdf.gdg 35 
                 +  +dga   ++y+W+  gdg
  KIR64208.1 774 TDvEDGAvaGTRYRWTAyGDG 794
                 446555411468889863554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 5579.92
//
Query:       KIR64209.1  [L=145]
Description: AraC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-22   80.0   0.5    1.2e-22   80.0   0.5    1.7  2  HTH_18    Helix-turn-helix domain
    6.8e-14   51.5   0.0    8.4e-06   25.8   0.0    2.2  2  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara
  ------ inclusion threshold ------
       0.11   12.4   0.0         19    5.2   0.0    2.5  3  HTH_5     Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.5      0.65   3.9e+03      26      40 ..      10      24 ..       6      32 .. 0.71
   2 !   80.0   0.5   1.9e-26   1.2e-22       1      81 []      37     116 ..      37     116 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.65
                HHHHHHHHHHHHHHH CS
      HTH_18 26 eylrrlRlerArrlL 40
                ++++  Rl+r+r+++
  KIR64209.1 10 RLRDLARLRRVRDRI 24
                566677888888765 PP

  == domain 2  score: 80.0 bits;  conditional E-value: 1.9e-26
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrrr 81 
                 la+ +++s+ +L+r+f+  +g +p+ yl ++R+erA++lL++  +lsv+e+++a+G ++l++Fs+ f +l g++Ps+yr+r
  KIR64209.1  37 LARGANMSAGHLSRQFRLAYGESPYSYLMTRRIERAMALLRR-GDLSVTEVCFAVGCASLGTFSTRFTELVGMPPSTYRQR 116
                 799***********************************9975.************************************97 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.4e-09   8.4e-06       1      41 [.      24      64 ..      24      65 .. 0.94
   2 !   23.9   0.0   5.5e-09   3.3e-05       7      42 .]      79     115 ..      76     115 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.4e-09
                HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC  1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyr 41
                +  +++++l +e +A  +++S  ++sr+F+ ++G++P +y+
  KIR64209.1 24 IDRDYAQPLDVEALARGANMSAGHLSRQFRLAYGESPYSYL 64
                56799********************************9887 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 5.5e-09
                 CT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   7 tnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                  +l++++++ ++g+ S  +Fs++F + +Gm Ps yr+
  KIR64209.1  79 GDLSVTEVCFAVGCaSLGTFSTRFTELVGMPPSTYRQ 115
                 679******************************9996 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0031        19      14      37 ..      30      53 ..      26      54 .. 0.91
   2 ?    4.4   0.0    0.0059        35       8      26 ..      73      91 ..      71      93 .. 0.87
   3 ?   -3.5   0.0       1.7     1e+04      23      31 ..     104     112 ..     103     112 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0031
                SSEEHHHHHHHHTS-HHHHHHHHH CS
       HTH_5 14 gelcvcelaeelglsqstvShHLk 37
                ++l v  la+  ++s + +S++++
  KIR64209.1 30 QPLDVEALARGANMSAGHLSRQFR 53
                799999***************987 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0059
                HHHHTTSSEEHHHHHHHHT CS
       HTH_5  8 LklLaegelcvcelaeelg 26
                + lL++g l+v+e + ++g
  KIR64209.1 73 MALLRRGDLSVTEVCFAVG 91
                678999*********9987 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.7
                 HHHTS-HHH CS
       HTH_5  23 eelglsqst 31 
                 e +g+++st
  KIR64209.1 104 ELVGMPPST 112
                 678999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1121.58
//
Query:       KIR64210.1  [L=215]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-14   54.5   0.0    1.7e-14   53.9   0.0    1.3  1  Response_reg  Response regulator receiver domain
    5.1e-12   45.2   0.0    9.7e-12   44.3   0.0    1.5  1  GerE          Bacterial regulatory proteins, luxR family
    4.7e-07   29.4   0.0    1.1e-06   28.3   0.0    1.6  1  Sigma70_r4_2  Sigma-70, region 4
     0.0016   18.2   0.1     0.0036   17.0   0.1    1.5  1  HTH_38        Helix-turn-helix domain
     0.0025   17.3   0.5      0.006   16.1   0.1    1.9  2  Sigma70_r4    Sigma-70, region 4
  ------ inclusion threshold ------
      0.032   14.3   0.3       0.13   12.3   0.1    2.2  2  HTH_29        Winged helix-turn helix
      0.049   13.9   0.2       0.18   12.1   0.2    1.9  2  PAS_4         PAS fold


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   6.7e-18   1.7e-14       1     101 [.       3     109 ..       3     119 .. 0.91

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 6.7e-18
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSS...SEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCT. CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpg...mdGlellkeireedpelpviiltahseeedavealkag. 93 
                   v+i++D+ l+re+l  ll + g+ +va++ d+++++  +++ ++dl+++D++mp     +Gl+++  +r+  p+l v++l+++ ++++a e l  g 
    KIR64210.1   3 VVIAEDSVLLREGLVGLLSRFGFDVVAAVGDAAALVTAVEQTAPDLVVTDVRMPPgftDEGLRAAVALRAARPDLAVVALSQYVQHSYAGELLGSGq 99 
                   79****************************************************85656*********************************96553 PP

                   ..ESEEEESS CS
  Response_reg  94 ..addflsKp 101
                     a ++l K+
    KIR64210.1 100 grAIGYLLKD 109
                   3378888886 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   3.8e-15   9.7e-12       2      47 ..     149     194 ..     148     207 .. 0.95

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 3.8e-15
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT- CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnv 47 
                  Ls+RErevL+l+aeG sn  IA+ l + e  V  h++n++ KL++
  KIR64210.1 149 HLSPREREVLALVAEGHSNAAIARMLTLTEAGVGKHIGNVLAKLRL 194
                 69*****************************************975 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   4.1e-10   1.1e-06       8      54 .]     147     192 ..     144     192 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 4.1e-10
                   HTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   8 laeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   +++L++r+re++ l   eg+s + IA++l ++e+ V +++   ++kL
    KIR64210.1 147 IEHLSPREREVLAL-VAEGHSNAAIARMLTLTEAGVGKHIGNVLAKL 192
                   89************.79***********************9888887 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.4e-06    0.0036       4      30 ..     149     174 ..     147     177 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.4e-06
      HTH_38   4 hLsleeReeIerllaeGlslreIArrL 30 
                 hLs+ eR e  +l aeG+s+++IAr L
  KIR64210.1 149 HLSPRER-EVLALVAEGHSNAAIARML 174
                 9******.66789************87 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.1   5.3e+03      37      44 ..     136     143 ..     134     145 .. 0.74
   2 !   16.1   0.1   2.3e-06     0.006       3      49 ..     148     193 ..     147     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.1
                 HHHHHHHH CS
  Sigma70_r4  37 VrqiekrA 44 
                 Vrq++ r+
  KIR64210.1 136 VRQLMLRG 143
                 99999776 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.3e-06
                 HHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Sigma70_r4   3 asLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLR 49 
                 ++L++rerevl l+  eg++ + I+++l +++  V  ++ + l kLR
  KIR64210.1 148 EHLSPREREVLALVA-EGHSNAAIARMLTLTEAGVGKHIGNVLAKLR 193
                 79***********97.5559999*****9999999999999999998 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.1   2.7e+03      32      40 ..     120     128 ..     115     156 .. 0.55
   2 ?   12.3   0.1     5e-05      0.13       3      29 ..     156     181 ..     155     186 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.1
      HTH_29  32 wlkrfeegG 40 
                  l+r  egG
  KIR64210.1 120 LLRRVAEGG 128
                 455555555 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 5e-05
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtv 29 
                 ++l+l+aeG+s  + iA++l l++  v
  KIR64210.1 156 EVLALVAEGHS-NAAIARMLTLTEAGV 181
                 699*******8.********9998776 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   6.9e-05      0.18      13      74 ..      75     139 ..      65     179 .. 0.77
   2 ?   -0.2   0.0      0.44   1.1e+03      51      99 ..     153     208 ..     140     212 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.9e-05
       PAS_4  13 pdgrvlyaNaaaae.lfgappeellGktlaellpee..daarleralrrvlegeepiefleelll 74 
                 pd+ v+++++  ++ ++g    +  G+    ll ++  d a++++ lrrv+eg+++++ + ++ l
  KIR64210.1  75 PDLAVVALSQYVQHsYAGELLGSGQGRAIGYLLKDRvaDVAEFADLLRRVAEGGTVVDPEVVRQL 139
                 666777777776666666777777777777666666889*****************999888776 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.44
       PAS_4  51 rleralrrvlegeepiefleelll..pgeerhyelrl....lPlrdesGe.vigvl 99 
                 r ++ l+ v+eg+  +  +  l+l   g ++h+   l    lP+ d+  + v++vl
  KIR64210.1 153 REREVLALVAEGHSNAAIARMLTLteAGVGKHIGNVLaklrLPVSDDTNRrVLAVL 208
                 55555555666655555555444455444444444333445666665555455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1582.50
//
Query:       KIR64211.1  [L=429]
Description: hypothetical protein TK50_00275 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-13   49.8   4.2    1.2e-12   48.1   4.2    2.0  1  HisKA_3      Histidine kinase
    2.2e-11   44.1  28.3    2.2e-11   44.1  28.3    3.1  4  Sensor       Putative sensor
    9.5e-06   25.6   0.1    2.2e-05   24.4   0.1    1.6  1  HATPase_c_2  Histidine kinase-like ATPase domain
    0.00018   22.0   0.0     0.0012   19.4   0.0    2.3  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   4.2   2.7e-16   1.2e-12       1      68 []     241     307 ..     241     307 .. 0.92

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 2.7e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLrpaal 68 
                 ER+ri R+LHD+ +q+L+++++ql+la+  l +    aa +++ ++++a+  ++e+R+l++ + p++l
  KIR64211.1 241 ERHRIERDLHDVAQQRLVSLTMQLGLARLDLPSG-SPAAVAVASAHDHAKALMAELRDLIRGISPQTL 307
                 9***************************777443.59999**********************999875 PP

>> Sensor  Putative sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   7.5      0.12   5.2e+02      85     124 ..      32      71 ..       6      73 .. 0.65
   2 !   44.1  28.3   4.8e-15   2.2e-11       9     162 .]      66     213 ..      61     213 .. 0.81
   3 ?   -2.0   0.2      0.73   3.3e+03      45      65 ..     223     243 ..     220     267 .. 0.69
   4 ?   -3.2   0.0       1.7   7.8e+03      71      83 ..     283     300 ..     246     312 .. 0.57

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.12
      Sensor  85 patwrdllylllhfplglvlfvvavvllalalalltaPlw 124
                 +a+   ll+l+l fpl+ ++++v v+   +a a  ++P w
  KIR64211.1  32 TAVASGLLWLVLSFPLAPLALAVGVLKAEGARAVGATPHW 71 
                 4555678888888888876776666665555555555554 PP

  == domain 2  score: 44.1 bits;  conditional E-value: 4.8e-15
      Sensor   9 gvaafvllvtglslglgllvllvGlplLalalllarglaaveRrrarlllglpvprphrapeppgllarlrallrdpatwrdllylllhfplglvlfvv 107
                 g+    ++ t +s+ ++l++++vGl++ + +  la ++a +eR+r+rl +++  p          +++r ++l +dpatwr+++ylll ++++    v 
  KIR64211.1  66 GATPHWWAGTYVSVAVVLSLVGVGLLA-LTVPKLATAVAGIERWRLRLADDA--P---------AVARRSGNLYTDPATWRSVAYLLLLGIVAP---VW 149
                 555567999999***********9995.5678999************76554..4.........357899**********************96...55 PP

      Sensor 108 avvllalalalltaPlw.........tlpeallvavlGlllllvllwvvrglarlqallaraLL 162
                 + vl + +l  +++P++         +   a+  avlGl+l++++l+++ ++++ +a+lar LL
  KIR64211.1 150 LGVLGLAGLLVVSTPIAvhyrlvtmeSTGSAVSRAVLGLVLIPAVLYLTSAFGGGHAALARLLL 213
                 555555566667777743444554443788999999*************************998 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.73
      Sensor  45 glaaveRrrarlllglpvprp 65 
                  l +v R+rarl +  +++r 
  KIR64211.1 223 ELVEVTRSRARLADAFDAERH 243
                 677888999998887777733 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 1.7
      Sensor  71 p.....pgllarlrallr 83 
                       + l+a lr l+r
  KIR64211.1 283 SahdhaKALMAELRDLIR 300
                 022234566666666665 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   4.9e-09   2.2e-05      35      83 ..     347     392 ..     331     408 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 4.9e-09
  HATPase_c_2  35 aveEactNavehayleapegpvevrlesdeealtvevaDsGpg.fdpetl 83 
                  av+Ea++Nav+ha       + +v+++++++ ltv+v+D+G+g  dp+ +
   KIR64211.1 347 AVSEALANAVKHAAAT----EATVAARRSGGMLTVQVRDDGRGgADPSRG 392
                  8*************84....4578888****************9999864 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.7   1.2e+04      36      56 ..     289     309 ..     275     316 .. 0.75
   2 !   19.4   0.0   2.6e-07    0.0012       8      48 ..     346     385 ..     340     429 .] 0.90

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.7
                 TEEEEEEEESSSSSTTHHHTG CS
   HATPase_c  36 ddlvisveDnGiGipkedlkk 56 
                 + l+ + +D  +Gi+++ l +
  KIR64211.1 289 KALMAELRDLIRGISPQTLRE 309
                 467778888899999988775 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.6e-07
                 HHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSS CS
   HATPase_c   8 qiisnlvdNavkfatkageieveikaseddlvisveDnGiG 48 
                  ++s+++ Navk+ + a+e +v  ++s + l+++v+D+G+G
  KIR64211.1 346 AAVSEALANAVKH-AAATEATVAARRSGGMLTVQVRDDGRG 385
                 679**********.88999****997779***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2710.45
//
Query:       KIR64212.1  [L=161]
Description: polyketide cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-20   73.7   2.9    1.7e-20   73.5   2.9    1.1  1  AHSA1            Activator of Hsp90 ATPase homolog 1-like pro
    0.00017   21.9   5.3    0.00023   21.5   5.3    1.1  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
  ------ inclusion threshold ------
      0.084   13.1   1.6        1.1    9.5   0.5    2.1  2  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
      0.094   12.8   0.0       0.14   12.3   0.0    1.2  1  Chalcone_3       Chalcone isomerase-like


Domain annotation for each model (and alignments):
>> AHSA1  Activator of Hsp90 ATPase homolog 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   2.9   3.9e-24   1.7e-20       2     124 ..      23     159 ..      22     160 .. 0.91

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 3.9e-24
                 S-HHHHHHHHH-HHHHHHH.....EEEEEEEE--STTEEEEE.EETTTSEEEEEEEEEEEEETTTEEEEEEEEETSET.....EEEEEEEEEEEEETTE CS
       AHSA1   2 apperVfraltdpellkrW.....ftlteaemdlrpGgkfrl.rdspdgkefgnegeylevvpperlvytwrledepe.....eeestvtieleeeggg 89 
                 a +erV++++ d+ +l+rW     +  t  ++d+ +Gg  ++ +++p+g++  +  ++++++ p++l++  ++ de+      +++++++ +l++ g  
  KIR64212.1  23 AGVERVWQVWADARQLERWwgpptWPATFEQHDFVVGGWSHYyMTGPEGEKARGWWRITALDAPHQLEFDDGFSDEHGtptdtDRPTHAVATLTADGAR 121
                 779***************99******************99999***************************999976667999988************** PP

                 EEEEEEE...EEEEHCHHHHHHHHHHHHHHHHHHHHHH CS
       AHSA1  90 Trltlth...tglprkqkeeegveeGweqsldqLkall 124
                 Tr+tl+    + ++ +++ ++g+eeG +++l q++ ll
  KIR64212.1 122 TRMTLVSsfvDAEQLERMVNMGMEEGLREALGQIDGLL 159
                 *******555566666666666***********99887 PP

>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   5.3   5.1e-08   0.00023       3     136 ..      14     149 ..      12     155 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5.1e-08
                      EEEEEEEESS-HHHHHHHHTTTTGGGGT.-TTEEEEECSESTSSSTTTEEEEECCCS....SEEEEEEEEEETTTTEEEEEE...E....SSS- CS
  Polyketide_cyc2   3 kvtvsvviaappekVwalvsdfenwprW.hpevarveleggggpargvegtvrvggr....gtvreelvevdpegrllsyri...v...kpvpv 85 
                      ++t  ++++a +e+Vw + +d +++ rW  p+   ++ e+  + ++g ++++ ++g     ++  ++++++d+ ++ l+++        +p  +
       KIR64212.1  14 TLTFVAEFDAGVERVWQVWADARQLERWwGPPTWPATFEQ-HDFVVGGWSHYYMTGPegekARGWWRITALDA-PHQLEFDDgfsDehgTPTDT 105
                      56778899*******************7566666566664.333355567777888788888899*******8.9******9554153433333 PP

                      TSE.EEEEEEEECCETEEEEEEEEEEEE--TT--HHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  86 any.vatwtvtpdgggtrvtwtgefdagplggpfekpaaakavkgdleagLe 136
                       +   a  t+t+dg+ tr+t    f         +++ ++++v   +e+gL+
       KIR64212.1 106 DRPtHAVATLTADGARTRMTLVSSFV--------DAEQLERMVNMGMEEGLR 149
                      33324555666666667777666554........445555555555555554 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.5   0.00024       1.1       3      22 ..      23      42 ..      21      47 .. 0.89
   2 ?    2.9   0.0     0.027   1.2e+02      69     124 ..      66     150 ..      48     155 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00024
                    S-HHHHHHHHTTTGGCCSCC CS
  Polyketide_cyc  3 apadqvyalvadvesypefl 22
                    a ++ v++++ad  ++ +++
      KIR64212.1 23 AGVERVWQVWADARQLERWW 42
                    6689***************8 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.027
                     TTCCCCCEEEEEEEECTECC...........EEE....................CEEEEEEEEEEEE-SSCHHHHHHHHHHHHHHHH CS
  Polyketide_cyc  69 lvegdfkslegkWtieslpp...........nsg....................gtrtkvalevdfkfaspllgalvgqvaervlde 124
                     + +   ++ +g W+i+ l+                                   g rt+ +l   f ++ + l+ +v++  e+ l+e
      KIR64212.1  66 MTGPEGEKARGWWRITALDAphqlefddgfsD-EhgtptdtdrpthavatltadGARTRMTLVSSF-VDAEQLERMVNMGMEEGLRE 150
                     56666688899999999998776666555541.045666667777777777777666777776667.77777777777777766666 PP

>> Chalcone_3  Chalcone isomerase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.1e-05      0.14      47      92 ..     109     154 ..     104     160 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.1e-05
  Chalcone_3  47 sdaeailaaeekairleilsrdvsseklkkaleegfekntaeelae 92 
                 + a a l+a++++ r++++s+ v++e+l++ ++ g+e+  +e+l +
  KIR64212.1 109 THAVATLTADGARTRMTLVSSFVDAEQLERMVNMGMEEGLREALGQ 154
                 56778889999**************************988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 1083.06
//
Query:       KIR64213.1  [L=110]
Description: ArsR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-08   33.8   1.9    2.6e-08   33.8   1.9    1.7  2  HTH_20      Helix-turn-helix domain
     0.0012   18.7   1.0     0.0022   17.8   1.0    1.5  1  MarR_2      MarR family
     0.0078   16.1   0.0      0.011   15.5   0.0    1.3  1  HTH_5       Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
      0.011   15.3   0.1       0.06   13.0   0.0    1.9  2  HTH_41      Helix-turn-helix domain
       0.12   12.2   1.9       0.63    9.9   0.1    2.2  2  FtsK_gamma  Ftsk gamma domain
       0.15   12.1   0.0       0.16   11.9   0.0    1.1  1  YwpF        YwpF-like protein
       0.87    9.9   8.4        9.6    6.5   8.4    2.2  1  DUF4129     Domain of unknown function (DUF4129)


Domain annotation for each model (and alignments):
>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   1.9     1e-11   2.6e-08       1      61 []      12      71 ..      12      71 .. 0.97
   2 ?   -1.1   0.1      0.83   2.1e+03      42      55 ..      76      90 ..      72      96 .. 0.65

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1e-11
                HHHHHHHS-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTEE CS
      HTH_20  1 dqiaeALahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvregr 61
                d++++ALa+ +Rr+i +    + + ++s+la+   +s + + +H++vLe+a Lv+ +r gr
  KIR64213.1 12 DRVFHALADATRRDIVARV-IRHAESVSALARHYPMSFAAVQKHVAVLERASLVTKERRGR 71
                689****************.**************************************997 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.83
                HHHHHHHHH.CTTEE CS
      HTH_20 42 syHLrvLee.agLve 55
                +  + vL++ a L++
  KIR64213.1 76 HADMTVLRRaARLLD 90
                455677777666665 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   1.0   8.6e-07    0.0022       5      55 ..      21      68 ..      13      74 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 8.6e-07
                HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2  5 paqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrp 55
                 + +++ a + r+ +   +v++lar+  +s +av+++++ L++a Lv++++
  KIR64213.1 21 ATRRDIVARVIRHAE---SVSALARHYPMSFAAVQKHVAVLERASLVTKER 68
                456666777777776...*****************************9984 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.4e-06     0.011       1      47 []      20      66 ..      20      66 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.4e-06
                SHHHHHHHHHHTTSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
       HTH_5  1 dptRlkILklLaegelcvcelaeelglsqstvShHLkkLreaGLVek 47
                d tR++I+  + +   +v+ la++  +s ++v  H ++L+ a LV+k
  KIR64213.1 20 DATRRDIVARVIRHAESVSALARHYPMSFAAVQKHVAVLERASLVTK 66
                569*****************************************986 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.4e-05      0.06       8      43 ..      36      71 ..      33      72 .. 0.95
   2 ?   -0.5   0.0      0.39     1e+03       4      15 ..      98     109 ..      98     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.4e-05
      HTH_41  8 tIeelakeleLSvGlvQkALklLeddkaislerrGr 43
                +++ la  + +S   vQk +  Le +  ++ errGr
  KIR64213.1 36 SVSALARHYPMSFAAVQKHVAVLERASLVTKERRGR 71
                79999******************************9 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.39
      HTH_41   4 dRlktIeelake 15 
                 +R+ +I++l+ e
  KIR64213.1  98 ERVARIDQLIAE 109
                 799*****9875 PP

>> FtsK_gamma  Ftsk gamma domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00024      0.63       8      56 ..      24      71 ..      18      77 .. 0.82
   2 ?    1.7   0.2     0.091   2.3e+02      35      45 ..      84      94 ..      82      95 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00024
  FtsK_gamma  8 eeavelvveegkaStSllQRrlriGYnRAarlidqLeeeGiVgpaegsk 56
                +++v+ v+++ + S+S l R++ + ++  ++ +  Le++ +V+++   +
  KIR64213.1 24 RDIVARVIRHAE-SVSALARHYPMSFAAVQKHVAVLERASLVTKERRGR 71
                566677777655.*****************************9987655 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.091
  FtsK_gamma 35 RAarlidqLee 45
                RAarl+d+ ee
  KIR64213.1 84 RAARLLDAYEE 94
                9******8775 PP

>> YwpF  YwpF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.3e-05      0.16      41     131 ..       2      92 ..       1      95 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.3e-05
        YwpF  41 lieavvekeyeeffeellekeeellvevvItkksNdPatlvvtvksitkleekisvllegklvtkkkdlaeklLeeLvkeglegeeLleeF 131
                 ++e+v  ++  ++f++l ++ ++  v  vI + +   a       s  ++++++ vl +++lvtk ++  e+l++  +    +  +Ll+++
  KIR64213.1   2 VVEMVSGEQADRVFHALADATRRDIVARVIRHAESVSALARHYPMSFAAVQKHVAVLERASLVTKERRGREQLVHADMTVLRRAARLLDAY 92 
                 68999999************999999999******************************************99987666666666666665 PP

>> DUF4129  Domain of unknown function (DUF4129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   8.4    0.0038       9.6      10      50 ..      11      96 ..       9      96 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0038
     DUF4129 10 aergldrrpgeTprEyarrv.riaps......................paa.......................alaalaelfeear 50
                a+r++   +++T r++++rv r+a s                        +                       ++a+l++++ee++
  KIR64213.1 11 ADRVFHALADATRRDIVARViRHAESvsalarhypmsfaavqkhvavlE-RaslvtkerrgreqlvhadmtvlrRAARLLDAYEEIW 96
                57788888999*********98888866666666666555555555550.055556666666667777788888999999****999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 813.21
//
Query:       KIR64214.1  [L=300]
Description: 23S rRNA methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-39  134.3   0.1    3.5e-39  133.3   0.1    1.5  1  TSNR_N          Thiostrepton-resistance methylase, N terminus
    2.1e-28   99.2   0.0      1e-27   97.0   0.0    1.8  2  SpoU_methylase  SpoU rRNA Methylase family
  ------ inclusion threshold ------
       0.13   12.5   0.0       0.24   11.7   0.0    1.3  1  SpoU_sub_bind   RNA 2'-O ribose methyltransferase substrate b


Domain annotation for each model (and alignments):
>> TSNR_N  Thiostrepton-resistance methylase, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.1   5.9e-43   3.5e-39       2     110 ..       5     113 ..       2     114 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 5.9e-43
      TSNR_N   2 eiidnpsdPavrRilDvvkrsraaiktiLieDleplvqairaGvevieiYilegrdvsakleelaekrrvairllasavvnkifkgerkskvfglarvP 100
                 ++i ++sdPav+Ri Dv+k+sr+ ++t+LieD+eplv++iraG+e+ie+Y +e+++   ++ +++++r++++rl+   ++n +fk ++k+k+fg+arvP
  KIR64214.1   5 DVITDRSDPAVQRIADVTKPSRSVVRTVLIEDAEPLVECIRAGLEFIEVYGVETTPLPGEVLAACRQREIPVRLVGAPIMNDLFKTDKKPKAFGIARVP 103
                 79************************************************************************************************* PP

      TSNR_N 101 rPaklsDlad 110
                 rP ++ +la+
  KIR64214.1 104 RPWSFDELAR 113
                 ****999875 PP

>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.17   9.9e+02      99     123 ..      52      75 ..      14      81 .. 0.78
   2 !   97.0   0.0   1.7e-31     1e-27       3     142 .]     118     258 ..     116     258 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.17
                     EEEEBTTTBS-HHHHCTSSEEEE-- CS
  SpoU_methylase  99 lvfGnEdkGlsnelleladrlvkIp 123
                      v G E++ l+ e+l+++++  +Ip
      KIR64214.1  52 EVYGVETTPLPGEVLAACRQ-REIP 75 
                     577999999*******9996.5666 PP

  == domain 2  score: 97.0 bits;  conditional E-value: 1.7e-31
                     EEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST.T-SEGCCS.HHHT CS
  SpoU_methylase   3 ivvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl.kgkslsei.dlke 95 
                     i+vl+++++ gN+Gai+Rt  a+ga ++vlv+ +  ++ +++++ra+ g+ + l+  v +s ++a+++++++g+ l+a+++ ++  + ++ d +e
      KIR64214.1 118 IIVLDGVKIVGNIGAIVRTSFALGAGGIVLVDSDLTTIADRRLVRASRGYVFSLP-IVLASRADAIAHFQRTGVPLIAFDTeGDLAVGDLrDADE 211
                     79*****************************************************.5999*********************55557778856679 PP

                     TEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase  96 kvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
                     + al++G+E++G s+++ + a++ v+Ip+++ +eSLNv+v+++i+ly
      KIR64214.1 212 QLALLLGSEKTGTSRSFESIASHSVSIPINPAAESLNVSVCAGIALY 258
                     *********************************************98 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.1e-05      0.24       7      61 ..      39      91 ..      37      94 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.1e-05
  SpoU_sub_bind  7 aVleaLksgrriekllvtegradkrleellklakkrgikvelvdkekLdklsgta 61
                   +  e++++g ++ +++  e+   +   e+l+++++r i+v lv   +++ l +t+
     KIR64214.1 39 PLVECIRAGLEFIEVYGVETTPLPG--EVLAACRQREIPVRLVGAPIMNDLFKTD 91
                   66799***************66666..**********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2208.85
//
Query:       KIR64215.1  [L=204]
Description: pyrimidine reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-20   72.9   0.0    4.2e-20   72.4   0.0    1.2  1  RibD_C    RibD C-terminal domain


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   2.4e-24   4.2e-20       2     199 ..       3     178 ..       2     179 .. 0.84

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 2.4e-24
                 EEEEEEEEETTSBSSCTTSSGCTSS-HHHHHHHHHHHHTSSEEEEEH...HHHHHHT--SS--SSCHSCHHHTT.G....SS-EEEEEETTS-S-TTSH CS
      RibD_C   2 yvilklavSlDGklaaaggeskwitgeearadvhelraeadailvGr...gtvladnpsltvrwvkkreaeadaea....rqpvrvVvdstlrvpldak 93 
                 +vi++l++S+DG+++ + +      +e + + v+e    ad++l+Gr   + +++ +p   +   ++      a +     ++++vVv+++     + +
  KIR64215.1   3 KVISTLFISADGVAEIDPDWHMPYFDENMGRAVGEDYDAADVLLIGRetyDSFAGAWPDREAAGGDD------APFakqlGDMRKVVVSRQPL---EFS 92 
                 8**************88766666999999******************66666788888333333333......333356799********963...555 PP

                 .....HHHSSS-EEEEESSCSCHHHHHHCCESE-HHHHHHHHHHT.T--EEEEEETHHHHHHHHHTTT-SEEEEEEESCE--TTSBCSSSSST-SSEEE CS
      RibD_C  94 .....vltddaptlvatteeadkekveklkvrvdlkelleeLker.girsllveGGatLagsllraglvDelrlyiaPkllGgagktlfdgegfkalkl 186
                      ++++d                        l e+++ L+   gir +l+ G+ +++++ll+aglvDelrl+++P+   + g++lfd+++ +  +l
  KIR64215.1  93 wrnseLVDGD------------------------LLEAVASLRSDaGIRGILIPGSISVVQQLLAAGLVDELRLLVHPVAARK-GRRLFDEGDAP-YHL 165
                 2266666666........................*********999**********************************999.**********9.8** PP

                 EEEEEEEETTEEE CS
      RibD_C 187 klvksealgegvv 199
                 + + +ea+++gv+
  KIR64215.1 166 RVTATEAYPTGVL 178
                 ********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1470.88
//
Query:       KIR64216.1  [L=402]
Description: hypothetical protein TK50_00300 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-08   34.4   0.1    3.2e-08   33.0   0.1    1.7  1  HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family


Domain annotation for each model (and alignments):
>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.1   1.8e-12   3.2e-08      25     189 ..      90     274 ..      73     294 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.8e-12
                 EEEESSTSSSHHHHHHHHHHHHHHHHHHHHCTTTSSEEEEE-SSTTHHHHHHHGGHHHTTSSE............EEESS--SHHHHHHHHHHTSHTTT CS
   HpcH_HpaI  25 vliDlEdavalaeKdaARvlvsealkqldalaaaasevvVRvnsldselikqdlevldlgaqv............vlvPkvetaeealevvsalrepek 111
                 + iD Ed+  ++  ++    v++a++ l+    ++ +v +R+ sl++ + ++ +++ldl +++            v +Pkv++  +++++v++++e e+
  KIR64216.1  90 LRIDFEDGYGVRGDAEEDAAVRAAATALAR-GPVPRHVGLRIKSLEPATRRRAVRTLDLFLDAllrhrslpdgfrVTLPKVTSLPQVEAMVQLCAELEA 187
                 6699***99888888888889999999988.9999*************999998855544443111112222222458********************9 PP

                 S---HCCC-EEEEEE-SHHHHHTHHHHHTST........TEEEEEE-HHHHHHHTT-T..TSTTSHHHH.HHHHHHHHTTHCEEEEEEE CS
   HpcH_HpaI 112 girganketrllaqiEsaegvknaeeIaave........gldgvflGaeDlsadlgtk..rspegtevl.dareriltaaraagiaald 189
                   r     +r  +q+E+ ++v+ a+  a+v         +  g+  G+ D+sa+lg    +++ +  v  +a+  +  aa  +g+a+ d
  KIR64216.1 188 AHRL--PPLRFEIQVETPQAVLGADGTATVArmvhaaagRCVGLHYGTYDYSAALGVAagWQSLEHPVAdHAKAVLQVAAAGTGVAVSD 274
                 9999..8899999**************9998788888889999999**********872233333334445555555666667776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2913.92
//
Query:       KIR64217.1  [L=474]
Description: arabinofuranosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.3e-152  504.8  15.6   5.3e-152  504.8  15.6    1.6  2  Glyco_hydro_62  Glycosyl hydrolase family 62
    3.9e-32  110.6  14.1    3.9e-32  110.6  14.1    2.6  3  CBM_2           Cellulose binding domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_62  Glycosyl hydrolase family 62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   1.8      0.96   8.6e+03      13      62 ..      74     120 ..      63     129 .. 0.56
   2 !  504.8  15.6  5.9e-156  5.3e-152       1     272 []     173     443 ..     173     443 .. 1.00

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 0.96
  Glyco_hydro_62  13 galaepksgwaalkdftevvingkhivyasnadtgskygsmafspfsdws 62 
                     ga  +  + w a    + +++  k + y  +  t+    s++f+  ++ws
      KIR64217.1  74 GAGQTVTQAWNATVTQSGAAVTAKNVSYNGAIATN---ASVSFGFNGSWS 120
                     44455555666665556666666666666655333...355555555555 PP

  == domain 2  score: 504.8 bits;  conditional E-value: 5.9e-156
  Glyco_hydro_62   1 calpssykwtstgalaepksgwaalkdftevvingkhivyasnadtgskygsmafspfsdwsemasasqtatsfkavaptlfyfapkkiwvlayq 95 
                     c+lps+y+w+stgala+pksgw +lkdft + +ngk +vya+++d g+k+gsm+f+ f++wsema+asq+++s ++vaptlfyfapk+iwvlayq
      KIR64217.1 173 CNLPSTYRWSSTGALAQPKSGWVSLKDFTVAPYNGKQLVYATTHDNGTKWGSMNFGLFTNWSEMATASQNTMSSGTVAPTLFYFAPKNIWVLAYQ 267
                     9********************************************************************************************** PP

  Glyco_hydro_62  96 wgpttfsyrtssdptnangwsaeqalfsgkisdsstgaidqtvigddknmylffagdngkiyrssmpidnfpgsfgsqsevilsdttenlfeavq 190
                     wg ++f yrts+dptn+ngwsa+q+lf+g+i++s tg+idqt+i+d++nmylffagdngkiyr+smpi+nfpgsfgs++++i+sdtt+nlfea+q
      KIR64217.1 268 WGGAAFNYRTSTDPTNPNGWSAAQTLFTGSITGSGTGPIDQTLIADSTNMYLFFAGDNGKIYRASMPIGNFPGSFGSSYTTIMSDTTNNLFEAPQ 362
                     *********************************************************************************************** PP

  Glyco_hydro_62 191 vytvdgqnkylmivealgangkryfrsftasslngewtaqaatesnpfagkansgatwtndishgdlvrnnpdqtmtvdpcn 272
                     vy+++gq++ylmivea+g++g ryfrsfta+sl+g+wt+qaatesnpfagkansgatwtndishg+l+r+++dqt+tvdpcn
      KIR64217.1 363 VYKLQGQDRYLMIVEAIGSQG-RYFRSFTATSLSGSWTPQAATESNPFAGKANSGATWTNDISHGELIRTSADQTFTVDPCN 443
                     *********************.***********************************************************9 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6  14.1   4.3e-36   3.9e-32       1     101 []      37     136 ..      37     136 .. 0.98
   2 ?   -1.1   0.3      0.26   2.4e+03      74      98 ..     223     247 ..     191     250 .. 0.67
   3 ?   -3.4   0.2       1.4   1.2e+04      47      73 ..     397     426 ..     389     431 .. 0.53

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 4.3e-36
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTE CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGa 99 
                 ++++yav s+W+ Gf a+v ++N g++  ++Wt++w++ agq+vtq+Wnatv+qsG +vta+nvs+Ng ia+ +s+sfGf+gs++gsn+aptsf++nG 
  KIR64217.1  37 CSVNYAVSSQWQDGFGANVSITNLGDPL-SSWTLTWSYGAGQTVTQAWNATVTQSGAAVTAKNVSYNGAIATNASVSFGFNGSWSGSNPAPTSFALNGV 134
                 889**********************975.79******************************************************************** PP

                 E- CS
       CBM_2 100 aC 101
                 +C
  KIR64217.1 135 TC 136
                 *9 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.26
                 EEEEEEEEEEE-SS----S--EETT CS
       CBM_2  74 gsasfGfqgsktgsnsaptsftvnG 98 
                 gs++fG+ ++++   +a++++   G
  KIR64217.1 223 GSMNFGLFTNWSEMATASQNTMSSG 247
                 5788898888888776666655555 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.4
                 EESEEEEEETTEEE...EEE-STT-EE-TT CS
       CBM_2  47 lWnatvsqsGnsvt...atnvswNgtiapG 73 
                 +W  ++++  n+++    +++ w + i  G
  KIR64217.1 397 SWTPQAATESNPFAgkaNSGATWTNDISHG 426
                 555555555555431113445666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3586.21
//
Query:       KIR64218.1  [L=285]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-09   36.2   0.1    0.00085   18.9   0.0    2.3  2  NmrA            NmrA-like family
    2.7e-08   33.9   3.6    1.7e-05   24.8   0.4    2.9  3  NAD_binding_10  NAD(P)H-binding
    4.7e-05   23.0   0.7      0.022   14.2   0.3    3.1  2  Epimerase       NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.5   2.8e-06     0.017       1      32 [.       2      33 ..       2      74 .. 0.84
   2 !   18.9   0.0   1.4e-07   0.00085     139     231 ..     120     207 ..     116     209 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.8e-06
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdt 32
                IlviG+TG  G+ v++ l++  h++r+  R  
  KIR64218.1  2 ILVIGGTGTTGRLVTARLAATTHPTRVASRRA 33
                9*************************998876 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 1.4e-07
                 EEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHHHHHHHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS-EEE CS
        NmrA 139 vyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvikilkdprklkgkriklagntlsgneivelfekkigktvkY 231
                 +++  fmenf +     ++++t++ e   ++++ g++   ++ + +Di+++ + +l dp+   ++++    + ls+ +++++++   g++v+ 
  KIR64218.1 120 LRPSWFMENFVGD----HPHATSTRERGEIVSATGDARVGFV-DPADIAEVAVRALTDPTPHDTEHVITGPEALSYADVAAILTDIGGRPVRH 207
                 5678899999993....3566777666778899999888888.*******************999999999******************9986 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.4   2.9e-09   1.7e-05       1     107 [.       6     102 ..       6     114 .. 0.85
   2 !    9.1   0.0   0.00019       1.1     137     184 .]     116     173 ..     114     173 .. 0.61
   3 ?   -2.8   0.0      0.84     5e+03      53      77 ..     227     251 ..     224     255 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2.9e-09
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-.--TCCHHHHHHHHHHHHHHCT--EEE CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsal.ggggkdeegaknivdaakeagvkRfv 94 
                     G+tG +Grl++++l+a + h++++  R+++  +          v  d  d ++ a+al+ga   +  +  g+++ ++++   +  a++agv+R v
      KIR64218.1   6 GGTGTTGRLVTARLAATT-HPTRVASRRASAGD----------VRFDWYDRSTHAAALDGATGLYLIApVGDADPAQVMLPFLGLARQAGVRRAV 89 
                     9****************5.99999888888876..........789****************99888845555567779**************** PP

                     EEEETTTTSGCGC CS
  NAD_binding_10  95 lvsaigvgdevpg 107
                     l+s+  ++   pg
      KIR64218.1  90 LLSSSAIEAGEPG 102
                     ****999865554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00019
                     EEEEEEE-CEE-S...T.--SEEEE......ETTSS----EEEHHHHHHHHHHHCTXG CS
  NAD_binding_10 137 dwTivrpggLtde...p.ttkyrvv......ekgepfkggsisradVAdvlvavlddp 184
                     +w ++rp++++++   + ++ + +       +   + + g +  ad+A+v+v++l+dp
      KIR64218.1 116 EWAVLRPSWFMENfvgDhPHATSTRergeivSATGDARVGFVDPADIAEVAVRALTDP 173
                     6999*****98752222122222221111112333344579**************997 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.84
                     HHHHHHTT-SEEEES---TCCHHHH CS
  NAD_binding_10  53 dlaealkgadaVvsalggggkdeeg 77 
                     d a+ l+g d+ ++a++ +++++++
      KIR64218.1 227 DFARLLAGLDTAIAAGAEDRTTSTV 251
                     6788888888888888877765554 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.3   3.7e-06     0.022       1     118 [.       2      96 ..       2     108 .. 0.78
   2 !    3.7   0.0    0.0061        37     201     236 ..     145     180 ..     128     184 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.7e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnll 99 
                 ilV+G+tG  G+ ++ +l++ ++   + +r+ sa+          v+ d+ drs  +++++  +++  +++A vg+ +             +q++l  l
  KIR64218.1   2 ILVIGGTGTTGRLVTARLAATTHPTRVASRRASAGD---------VRFDWYDRSTHAAALD--GATGLYLIAPVGDAD------------PAQVMLPFL 77 
                 8******************************77666.........5888888888888877..777777775444332............245667777 PP

                 HHHHHHTCTEEEEEEEGGG CS
   Epimerase 100 eaarkagvkrllflsSsev 118
                   ar+agv+r + lsSs++
  KIR64218.1  78 GLARQAGVRRAVLLSSSAI 96 
                 7888888877777777765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0061
                 EEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTE CS
   Epimerase 201 tllgdgtalRdflyveDvaeaillvlehvdagdkge 236
                 ++  +g+a+  f++  D+ae+ +++l+ +   d+ +
  KIR64218.1 145 IVSATGDARVGFVDPADIAEVAVRALTDPTPHDTEH 180
                 445689*********************987766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2065.98
//
Query:       KIR64219.1  [L=240]
Description: hypothetical protein TK50_00340 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2023.32
//
Query:       KIR64220.1  [L=165]
Description: hypothetical protein TK50_00345 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-09   35.8   0.0    6.4e-09   35.4   0.0    1.2  1  YcxB        YcxB-like protein
  ------ inclusion threshold ------
      0.025   14.9   0.9      0.041   14.2   0.9    1.3  1  ATP-synt_I  ATP synthase I chain
       0.12   11.9   0.3       0.18   11.4   0.3    1.2  1  TMEM100     Transmembrane protein 100
        9.3    6.1   6.1       0.93    9.3   0.7    1.9  2  LapA_dom    Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> YcxB  YcxB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   1.4e-12   6.4e-09       1      61 []      96     156 ..      96     156 .. 0.97

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 1.4e-12
        YcxB   1 itedgievdsgggesiipWdsiekvkEtkdyfyLflsggsafiiPKraftkeeaeafrell 61 
                 it+  i ++sg++++ i Wd + +v  t++++++++++  a +iP+  ++ e+ae++r+++
  KIR64220.1  96 ITDTNIMMRSGSESGGIAWDGVDQVRVTPEFWIVYVGRMPATVIPRGLMSTEDAETLRAFM 156
                 78999********************************************99*******996 PP

>> ATP-synt_I  ATP synthase I chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.9   9.2e-06     0.041       4      55 ..      31      89 ..      28      95 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.2e-06
  ATP-synt_I  4 liqlvllavlalgwllt.......gsasvalsallGglisvlpfalfalrvfrfsgala 55
                l+ +vl++v ++g++++       +  s  l  l+Ggl+s+l + ++++r+ r sg+ a
  KIR64220.1 31 LVGAVLTVVGVIGFAVSrgsargeQFSSLWLAMLVGGLLSMLYAPWVRWRARRRSGSYA 89
                567899999999999996665554444466779******************88887655 PP

>> TMEM100  Transmembrane protein 100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3     4e-05      0.18      61     113 ..      33      85 ..      26      89 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4e-05
     TMEM100  61 gvvvLvaGvvvtavaytfnshgsvisvlglvLLsaGlv.llassavCWkvrrrr 113
                 g+v  v+Gv++ av+      ++  s l l++L  Gl+ +l +  v W++rrr+
  KIR64220.1  33 GAVLTVVGVIGFAVSRGSARGEQF-SSLWLAMLVGGLLsMLYAPWVRWRARRRS 85 
                 88999*********9887666666.***********985778889******986 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.5      0.47   2.1e+03      29      39 ..      32      42 ..      30      53 .. 0.61
   2 ?    9.3   0.7   0.00021      0.93      25      49 ..      61      85 ..      57      88 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.47
    LapA_dom 29 iGallgwllsl 39
                +Ga+l+++  +
  KIR64220.1 32 VGAVLTVVGVI 42
                56666655444 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00021
    LapA_dom 25 vafgiGallgwllslwsylrlrrel 49
                +a+++G ll +l + w ++r rr+ 
  KIR64220.1 61 LAMLVGGLLSMLYAPWVRWRARRRS 85
                89**************999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1262.59
//
Query:       KIR64221.1  [L=259]
Description: hypothetical protein TK50_00350 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.07   13.3   1.3       0.11   12.6   1.2    1.5  1  Laminin_G_3      Concanavalin A-like lectin/glucanases superf
       0.15   12.2   0.3         30    4.8   0.0    3.1  3  Pro_Al_protease  Alpha-lytic protease prodomain


Domain annotation for each model (and alignments):
>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.2   1.3e-05      0.11      62     122 ..     159     221 ..     113     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
  Laminin_G_3  62 nagngaeesvtsgasvpageWtHvavtyd..ggtlrlYvNGvevgsatltggllsatsgplvi 122
                  ++ +g++++++ +a+v++++W+   + +d  ++ + ++++Gv+  + t++++   +++ p+v+
   KIR64221.1 159 GGPTGDWTNWRESAPVTEDTWQCFEWELDpaDNRVAVWIDGVANPELTASTTEHGGNDVPFVL 221
                  33467999*********************98888*************9999988788888775 PP

>> Pro_Al_protease  Alpha-lytic protease prodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0034        30      27      41 ..      58      72 ..      50      77 .. 0.88
   2 ?   -1.9   0.0      0.42   3.7e+03      38      57 ..     155     174 ..     155     176 .. 0.82
   3 ?    3.6   0.2    0.0076        68      27      41 ..     184     198 ..     183     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0034
  Pro_Al_protease 27 WyVDvatNkVVVtad 41
                     W VD +  +++V+ +
       KIR64221.1 58 WGVDTRNGTLTVERA 72
                     ************966 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.42
  Pro_Al_protease  38 VtadsgvtaaaealaaaAgv 57 
                      V ad g t++++ + + A v
       KIR64221.1 155 VGADGGPTGDWTNWRESAPV 174
                      77999999999999998865 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.0076
  Pro_Al_protease  27 WyVDvatNkVVVtad 41 
                      W  D+a N+V V  d
       KIR64221.1 184 WELDPADNRVAVWID 198
                      999*******99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1986.06
//
Query:       KIR64222.1  [L=652]
Description: hypothetical protein TK50_00355 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00022   21.1  10.9      0.038   13.9   0.1    5.3  6  PD40        WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.017     3e+02       6      24 ..      56      74 ..      51      74 .. 0.82
   2 ?   -2.7   0.8      0.36   6.4e+03      15      19 ..     107     111 ..     106     111 .. 0.92
   3 !    2.9   0.0    0.0062   1.1e+02      13      22 ..     185     194 ..     179     199 .. 0.84
   4 !   13.9   0.1   2.1e-06     0.038      15      30 ..     297     312 ..     283     317 .. 0.84
   5 !    5.7   0.1   0.00083        15       9      30 ..     373     395 ..     365     404 .. 0.76
   6 ?   -3.2   0.0      0.52   9.4e+03       4      16 ..     611     623 ..     609     624 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.017
                SSSS.EEEEEE-TTSSEEE CS
        PD40  6 ntpgnegaPsfSPDGkrla 24
                +t g +++  + PDG+ ++
  KIR64222.1 56 KTGGTNFSADLAPDGRHIV 74
                78899999999*****886 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.36
                 EE-TT CS
        PD40  15 sfSPD 19 
                 ++SPD
  KIR64222.1 107 AWSPD 111
                 7***9 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.0062
                 EEEE-TTSSE CS
        PD40  13 aPsfSPDGkr 22 
                   s+SPDG++
  KIR64222.1 185 TVSVSPDGRY 194
                 5699****97 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 2.1e-06
                 EE-TTSSEEEEEEECT CS
        PD40  15 sfSPDGkrlaFsSdRg 30 
                 + SPDG++la+sS Rg
  KIR64222.1 297 AASPDGTSLAYSSGRG 312
                 67***********998 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.00083
                 S..EEEEEE-TTSSEEEEEEECT CS
        PD40   9 g.negaPsfSPDGkrlaFsSdRg 30 
                   ++ ++s+  DG+r   + +R+
  KIR64222.1 373 NwHIRGWSWFADGTRALVTEFRD 395
                 557899*********98887776 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 0.52
                 --SSSS.EEEEEE CS
        PD40   4 ltntpgnegaPsf 16 
                 +t t+g +g  sf
  KIR64222.1 611 VTATTGADGTVSF 623
                 8999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 5099.78
//
Query:       KIR64223.1  [L=264]
Description: hypothetical protein TK50_00360 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-27   95.2  18.6    3.5e-27   95.2  18.6    1.6  2  PrsW-protease  PrsW family intramembrane metalloprotease


Domain annotation for each model (and alignments):
>> PrsW-protease  PrsW family intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.7      0.12   2.2e+03       6      25 ..      10      30 ..       6      58 .. 0.52
   2 !   95.2  18.6   1.9e-31   3.5e-27       4     188 ..      68     237 ..      61     246 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.12
  PrsW-protease  6 llaaflwgalvavl.lallln 25
                    +a++++g+ + +l la l+ 
     KIR64223.1 10 WVAVLVLGVALYMLvLATLVD 30
                   444444444444442344433 PP

  == domain 2  score: 95.2 bits;  conditional E-value: 1.9e-31
  PrsW-protease   4 wlllaaflwgalvavllalllntvlqallraelgkfiaeflaaflvaglvEEllKalgvllllllrrrefdepldGivygaavglGFavlEnllYy 99 
                    ++++aa+++g ++ v++a  l+           +++ +  +  +l +gl+EE++K+++ +l+ll    + ++   G+v+g+a+g+GFa+lE+++Y+
     KIR64223.1  68 SVIAAAAFFGGIIGVVAAGWLE----------YDTLRSLGVLPMLFVGLIEETAKLVAPVLILL-FWWRHRSASNGLVIGVASGAGFAALETMGYA 152
                    4555555555555555444444..........4455566799999************9999995.555567899********************** PP

  PrsW-protease 100 vqalpsaanegqlgglqllilRillsvagHalftallGiglglaksrrraarrvqilllglllavllHalwNllaslaelllavvgvll 188
                    ++al +++  +   + q+l++R+l+++a+H  +t+l++ +l  ++++++ arrv ++++ +++av+lHa w++ as   ++ +vvg+++
     KIR64223.1 153 FTALVQSQG-NLGDVEQTLLVRGLTAPAAHLSWTGLTAGALFALAAAPS-ARRVIVFGATFVAAVALHACWDTFASQ--IAYVVVGLVS 237
                    *****9998.688899**********************99988888885.999*********************987..4444445444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 1902.00
//
Query:       KIR64224.1  [L=475]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-23   84.7   4.1    1.1e-23   84.7   4.1    1.8  2  SBP_bac_1  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   4.1   5.9e-28   1.1e-23       7     311 ..      70     367 ..      64     370 .. 0.90
   2 ?   -0.4   0.1      0.05     9e+02     186     232 ..     421     470 ..     376     474 .. 0.76

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 5.9e-28
                 HHHHHHHHHHHHHHHHTTEEEE..EEEECHHHHHHHHHHHHHTTSSSCSEEEE.CGGHHHHHHHTTSBECCHHHHHHT.TECTTCCTEEEEHHHHTHHH CS
   SBP_bac_1   7 gaalqalvakafekehpgikVe..iesvgsgslaqkltlaiaaGdgpaDviav.dndwiarlakaglllpldpyvkay.lapgvkdaadklsssvlpki 101
                 +aal+  + k f    +g k+   +++ + g+   k+ + +++G +  D++++ d++++a++   g l++++++v+a  +++g + a++k++ ++++ +
  KIR64224.1  70 NAALDSSI-KNFAD-ATGTKIGnsLVQADAGDAVAKIHAEVEGGVAR-DLAFMtDSRFVAQFQALGDLEDVTDVVQALtAKYGEPTAESKNYCVFDGRW 165
                 45555556.66644.57777765588889999999**********77.**************888**********998799****************** PP

                 HCEEEESEEEE.EEEEEEEETTTHHCTTGGG..SHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT..HHCSHHHHS CS
   SBP_bac_1 102 ldskvlyvPly.aargliYNkdlfekagldp..pwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgg..gldnpegvt 195
                 ++     +P++    g + +kd++ + g++p   +tW+el +++  + ++gk  +g+ ++   sg+a+   +al++s+gg  +++dg+  ++d+pe v+
  KIR64224.1 166 FA-----IPYHfIGIGSFLRKDWMQDKGISPkdVYTWEELRDVCLAISDPGKRRFGWGMTVNRSGDANGMIEALINSYGGAIASNDGRkvTFDSPETVQ 259
                 **.....****77************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE..EEEEEEEEB CS
   SBP_bac_1 196 aatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi..lgayglaip 292
                 a+t+l + y ++  +k + ++g++ +++++    + aG  + + +  +           ++ +++k +++ +++v++  +g+   +++    ++ ++++
  KIR64224.1 260 AVTFLADIY-TNPRFKPMLPPGVAAWTDSSNNENWLAGILGYTRNQFSV---------YADSKTKKNPVYANTHVFADCTGPATDTSLllGQSQSFVVF 348
                 *********.666788888888888888888888889*****9999999.........9999999999999*****977777777777*888888**** PP

                 TTCSTHHHHHHHHHHHTSH CS
   SBP_bac_1 293 kgsknpeaAkkFldfllsp 311
                 kg+kn + Ak + ++l ++
  KIR64224.1 349 KGAKNAALAKLLAQYLITA 367
                 ****************987 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.05
                 T...HHCSHHHHSHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHT CS
   SBP_bac_1 186 g...gldnpegvtaatylvklyavanltkelkgkgaenkdgaaalalfea 232
                     ++++ +++ a++++v   +++ + ++ ++++a  +  a ++++f++
  KIR64224.1 421 LdfpQKASAGQQAAVGAYVLTDMMQQVIQGTPPAQAVQAAHAKMVQIFTQ 470
                 24555566677778999999999999999999999998888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3371.25
//
Query:       KIR64225.1  [L=678]
Description: sugar ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-32  111.5  47.0    2.6e-18   66.4  12.0    3.6  3  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.063   13.2   1.0       0.26   11.2   1.0    2.0  1  TraQ          Type-F conjugative transfer system pilin chaper


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4  12.0   2.9e-22   2.6e-18       2     179 ..     108     321 ..     107     324 .. 0.86
   2 ?   -0.9   7.1      0.13   1.2e+03      66     167 ..     316     423 ..     309     437 .. 0.59
   3 !   58.6  12.8   7.4e-20   6.7e-16       3     177 ..     492     661 ..     486     672 .. 0.82

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 2.9e-22
  BPD_transp_1   2 illGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvf...............................vilsilghlilpviillllsaa 65 
                   ++lG+ aa  l++ ++++ +l +l  +++ +P++v a+ + +++                                +ls +  ++ +vi + ++  +
    KIR64225.1 108 VVLGLSAAllLHQLRRGRAVLAGLLLLPWVVPTVVTAFSWRALLdpifgsvnvlltdsgigpllarahlveawpaGWLSEASLAMPSVIGVNVWKGV 204
                   799********************************999988888888999999999******************9899888888888********** PP

  BPD_transp_1  66 pyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG..lgtllleailgydyseis.nggvl 159
                   p++++ + a+l+++p dl+eaa+++Gas+wq+f +v+lP +  +i  ++ l++++ ++++ l+ +l+++++   + + + +  ++ + + +  +g++
    KIR64225.1 205 PFFTVAFLAGLKAIPADLYEAATVDGASPWQRFAHVTLPGLRHVITVTVTLSSIWTFNNFDLIWLLTQGGPgnATAPYVLVAYSKAILQLQyGAGAA 301
                   *************************************************************999999777667666666666666666566445555 PP

  BPD_transp_1 160 alviavlllnlvadilqrll 179
                   ++++++ ++  ++++l+rll
    KIR64225.1 302 VTLVMLPVIGGLVYVLVRLL 321
                   55555556666666666666 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.13
  BPD_transp_1  66 pyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitg.lilafggl.lggavlleflgswpG........lgtllleailgydyse 152
                    +vrl+rr+a  + p+  + + +a+ as+ ++ r  +lP a+  +++g l++a++++ +++a+ll  l+   +        lg +  + +       
    KIR64225.1 316 VLVRLLRRDAGTEPPRRARATRKARTASTARTAR-KALPWAVAAVVAGlLVWASPHIaWKAALLLGVLLLVAAavgrvvsaLGARGSRRS------- 404
                   57899999999999*****************888.6777666666665156777777688887766555333332232222222222222....... PP

  BPD_transp_1 153 is.....nggvlalviavll 167
                    s      ++ +al+++++ 
    KIR64225.1 405 -SalvsgLASGAALALLLAF 423
                   .1233232222222222222 PP

  == domain 3  score: 58.6 bits;  conditional E-value: 7.4e-20
  BPD_transp_1   3 llGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifr 99 
                   l+G+ +a + ++++ + +++ + +++ +P  +l+i+l+  + i   l+++ +++++++ ++++p+++++  +++ s+p +l+eaa+++G++r q f 
    KIR64225.1 492 LAGYALA-RLRFRGAQGFTVTVLITYVMPGALLFIPLY-QLLIGARLTDSLWSLVVTYPTFTLPFATWLLTGYFASIPVELEEAALVDGCTRLQAFG 586
                   4566667.9999************************88.5567779999************************************************ PP

  BPD_transp_1 100 kvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..nggvlalviavlllnlvadilqr 177
                   +vvlP+a+p +++ +++++++++++++++  ++++    + +l++ ++++++           l++a ll+++ + i+++
    KIR64225.1 587 RVVLPLAKPGLLAVALFTLTNAWNEFLFAFVFITK--DEYKTLSVGMQSMITGDVvpQ---GQLAAASLLVSIPVVIMYA 661
                   ****************************9999976..677777777777777777443...3333333333333333332 PP

>> TraQ  Type-F conjugative transfer system pilin chaperone (TraQ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.0   2.9e-05      0.26      28      74 ..     360     408 ..     354     417 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.9e-05
        TraQ  28 var.lvyrkPelavllaeilavglvliGgy.rildaliarvadeerall 74 
                 va+ lv   P++a+++a +l+v l +  +  r++ al ar ++   al 
  KIR64225.1 360 VAGlLVWASPHIAWKAALLLGVLLLVAAAVgRVVSALGARGSRRSSALV 408
                 5442799***************988877644********9998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       948  (0.0528752); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 4454.83
//
Query:       KIR64226.1  [L=135]
Description: cell entry protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-44  149.3   0.2    6.5e-44  149.2   0.2    1.0  1  F420H2_quin_red  F420H(2)-dependent quinone reductase
     0.0064   17.0   0.2      0.076   13.6   0.1    2.1  2  DUF1117          Protein of unknown function (DUF1117)


Domain annotation for each model (and alignments):
>> F420H2_quin_red  F420H(2)-dependent quinone reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.2   0.2   7.3e-48   6.5e-44       6     130 .]       9     133 ..       4     133 .. 0.97

  Alignments for each domain:
  == domain 1  score: 149.2 bits;  conditional E-value: 7.3e-48
                      XXXXXXXXXXXTTXTTS---EEEEEE-TTT-SEEEEEEEEEEETTEEEEE-SGGGGSSS-HHHHHHHH--EEEEEETTEEEEEEEEE--HHHHH CS
  F420H2_quin_red   6 vaiyrrtegkvgrrlegvpvllLtttGrktgkprktplgfvrdgdsylvvaskgGapkhpswylNlkanPrvevqvgakkldvtAreveddeka 99 
                       a +r+++g+vg+++ g+p+llL+t+G+++g++r +p+++++ ++ y+v ask Gap +p+wy+N+ a+Prv+ ++g+++ +++Ar + +de++
       KIR64226.1   9 IAEFRANGGRVGGQFAGAPLLLLHTVGARSGQARVNPMMYQEVDGGYAVFASKAGAPTNPDWYHNVLAHPRVRAEIGTETVELVARVAAGDERE 102
                      5678999*************************************************************************************** PP

                      HHHHHHHHH-THHHHHHHHHSSTS-EEEEE- CS
  F420H2_quin_red 100 rlwklvvenspsYadyqsktdreipvvVlep 130
                      r w+  ++++p++ady  ktdr+ipvvVlep
       KIR64226.1 103 RIWSAQKAAYPGFADYERKTDRQIPVVVLEP 133
                      ****************************986 PP

>> DUF1117  Protein of unknown function (DUF1117)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   8.5e-06     0.076      19      72 ..      34      90 ..      16     114 .. 0.72
   2 ?    1.7   0.0      0.04   3.6e+02      19      34 ..     116     131 ..     111     133 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.5e-06
     DUF1117 19 sggrregerelPvvytemDGGfnge...egaprriswvsrssrsresggrlrrlvrn 72
                 g+r ++ r+ P++y e+DGG+       gap+   w ++     + +++++    +
  KIR64226.1 34 VGARSGQARVNPMMYQEVDGGYAVFaskAGAPTNPDWYHNVLAHPRVRAEIGTETVE 90
                46777888999**********754333499999999987766665555555555444 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.04
     DUF1117  19 sggrregerelPvvyt 34 
                 +   r+ +r++Pvv  
  KIR64226.1 116 ADYERKTDRQIPVVVL 131
                 556799*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 963.33
//
Query:       KIR64227.1  [L=247]
Description: hypothetical protein TK50_00385 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2032.04
//
Query:       KIR64228.1  [L=432]
Description: serine hydroxymethyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-142  474.7   0.0   2.1e-142  474.4   0.0    1.1  1  SHMT             Serine hydroxymethyltransferase
    1.1e-08   34.7   0.0    1.3e-08   34.4   0.0    1.1  1  Aminotran_1_2    Aminotransferase class I and II
    2.1e-06   27.3   0.0    2.9e-06   26.9   0.0    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    0.00028   20.3   0.0    0.00048   19.5   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
       0.14   11.7   0.0       0.26   10.8   0.0    1.3  1  LDcluster4       SLOG cluster4 family


Domain annotation for each model (and alignments):
>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  474.4   0.0  5.9e-146  2.1e-142       2     398 ..      19     394 ..      18     395 .. 0.99

  Alignments for each domain:
  == domain 1  score: 474.4 bits;  conditional E-value: 5.9e-146
                 HHHTHHHHHHHHHHHHHHHHSEE-STT-----HHHHHHHTSGGGG----EETTEESSST-HHHHHHHHHHHHHHHHHCT-STTTEEEE---SSHHHHHH CS
        SHMT   2 eesdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGcefvdeveelaqdrakelfkldpakwgvnvqplsGsqanl 100
                 ++sdp v e+i +e+ rq++++el+a  n++s a  ea  s+++    eGyPGkr++ G + +d++e+la+drakelfk+     ++nvqp+sG+qan+
  KIR64228.1  19 DRSDPGVQEAISREEGRQQRQLELLAPKNYASMATREAFRSIVSFTTIEGYPGKRFHAGMDNLDVIENLARDRAKELFKCR----YANVQPHSGTQANQ 113
                 679******************************************************************************....************** PP

                 HHHHHHT-TT-EEEEESCTTTSTGGGT-BTSS-B-SHHHHHSEEEEE-B-TTTSSB-HHHHHHHHHHH--SEEEEE-SST-S---HHHHHHHHHHTT-E CS
        SHMT 101 avytallepgdrilgldladGGhlthGakveskkisassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevgay 199
                 av+ all+pgd++l+++l +GGhl+hG ++++     s+ +f +v+y++d++ glidyd+l   a+e++Pkl+v G s+y+r++d+ar+r ++de+gay
  KIR64228.1 114 AVFFALLQPGDTVLSMSLDAGGHLSHGLRSNF-----SGRYFTVVSYGIDPQSGLIDYDQLTALAREHRPKLVVVGGSSYPRAVDFARIRAVCDEIGAY 207
                 *******************************9.....************************************************************** PP

                 EEEE-GGGHHHHHTTSS--GCCTSSEEEEESSSTT-S-S-EEEEEC-SEEEEETTTEEEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHCTSHHH CS
        SHMT 200 llvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillrkgvksvdktgkevleelekkinsavfPglqGGPlnhviaakavalkealepef 298
                 ll+d+ah+aGlvaagv+psPf++++vvt+tt k lrGprgglil+              + +l ++++sa+fPg+qGGPl   iaakava++eal+p+f
  KIR64228.1 208 LLADIAHFAGLVAAGVHPSPFPHTHVVTSTTNKNLRGPRGGLILTD-------------DPDLGRRLDSAIFPGVQGGPLPEFIAAKAVAFGEALRPDF 293
                 *********************************************9.............689************************************* PP

                 HHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTS.STTTT-SEEEEESHHHHHTT--HHHHHHHH CS
        SHMT 299 kvyqkqvlknakalaealkekgyklvsgGtdnhlvlvdlrekgldGkraekvlekvnitankntvPgd.ksalvtsGlrlGtpaltsrgfkeedlekva 396
                 ++y++ vl+na++l  +l ++gy++v+gGtd+ +v+vdlr +gl+G+ ae+ le++ i +nkn vPgd +++ vtsGlr+Gt+a+t+rg+++++l+ +a
  KIR64228.1 294 REYAEAVLANARRLGAVLADRGYDIVTGGTDTPIVMVDLRRHGLTGNVAERSLENAGIPCNKNLVPGDpHKPSVTSGLRFGTSAVTTRGLRDAELRVLA 392
                 **********************************************************************************************99888 PP

                 HH CS
        SHMT 397 kf 398
                  +
  KIR64228.1 393 GL 394
                 65 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   3.7e-12   1.3e-08      66     315 ..      98     335 ..      49     386 .. 0.74

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 3.7e-12
                    TGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEE...EESS-THH..HHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEES CS
  Aminotran_1_2  66 kreaavvvgsGagaliealifllklnpgdeilv...pdptyasy..knilrlsggevvryplyseedfhldlealeealkeapegnkktkvilves 156
                     r a+v+  sG++a+++++++ll+  pgd +l+   ++  + s+    ++  + ++vv+y ++ +++  +d ++l ++ +e+     ++k+++v +
     KIR64228.1  98 CRYANVQPHSGTQANQAVFFALLQ--PGDTVLSmslDAGGHLSHglRSNFSGRYFTVVSYGID-PQSGLIDYDQLTALAREH-----RPKLVVVGG 185
                    4667**************999998..******8333556888884468888999999999966.8888*********88885.....77******* PP

                    S-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEE.EHHHHHHHHHHHHHHT CS
  Aminotran_1_2 157 phNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilg.naavvsqlrklsrpfl 251
                     + P  +++    ++++   +++ +++l+ D a+ ++   +     +++   ++  +++v+s  ++ +l G R G il  ++++ + l ++  p+ 
     KIR64228.1 186 SSYPRAVDFA--RIRAV---CDEIGAYLLADIAHFAGLVAA----GVHPSPFPH--THVVTS-TTNKNLRGPRGGLILTdDPDLGRRLDSAIFPGV 269
                    ****988875..58888...**************9998872....224444444..444444.35666778888*****77789899999888888 PP

                    SSHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS..TEEEECCSCSSEEEEEETHH CS
  Aminotran_1_2 252 sssllqaavaa.alsdallkqseleemrqrlqkrrkelrdeLael..glkvlasqsgmflltdlsae 315
                       +l++++aa a+   +  + ++ e ++ + +++++l + La+   ++   +   + ++++dl+++
     KIR64228.1 270 QGGPLPEFIAAkAVAFGEALRPDFREYAEAVLANARRLGAVLADRgyDIVTGGT-DTPIVMVDLRRH 335
                    8888888655415555555666********************999644444444.444444455554 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     8e-10   2.9e-06      87     197 ..     152     264 ..     105     286 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 8e-10
                      EEEE-B-TTTSSB-GGGCGGG--TTEEEEEEB..-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS-SS CS
  DegT_DnrJ_EryC1  87 pvfvDvdpdtynidpaaieaaitertkaIlpV..hlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnlttG 178
                      +v   +dp++  id +++ a+  e +   ++V    y +++d+++++a++++ g +++ D Ah  G   +g +   +  + v+    +Knl   
       KIR64228.1 152 VVSYGIDPQSGLIDYDQLTALAREHRPKLVVVggSSYPRAVDFARIRAVCDEIGAYLLADIAHFAGLVAAGVHPSPFPHTHVVTSTTNKNLRGP 245
                      67778****************99999555555226888999***************************************************** PP

                      S-EEEEESTHHHHHHHHHH CS
  DegT_DnrJ_EryC1 179 eGGavvtndeelaekarvl 197
                       GG+++t+d++l +++   
       KIR64228.1 246 RGGLILTDDPDLGRRLDSA 264
                      ***********99887665 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.3e-07   0.00048      39     216 ..      90     294 ..      82     392 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.3e-07
                      HHHHHHTT-S.EEEEES-HHHHHHHHHHHH--TTEEEEEETT......-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S-TTS CS
  Beta_elim_lyase  39 davaelfgke.aalfvpqGtaAnsillkillqrgeevivtep......ahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevgahe 125
                      d+++elf    a +  ++Gt+An+  + +llq+g+ v+  +       +h+ +    +      v    ++ ++ G +d ++l a+ +e   h+
       KIR64228.1  90 DRAKELFKCRyANVQPHSGTQANQAVFFALLQPGDTVLSMSLdagghlSHGLRSNFSGRY--FTVVSYGIDPQS-GLIDYDQLTALARE---HR 177
                      67777887773345679********************98877644444444444443322..222233455555.*************9...55 PP

                      -EEEEEEEESSBTTTTTB---HH.HHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--SS-EEEEE-HH..... CS
  Beta_elim_lyase 126 ekiklisltvTnntagGqvvsle.elrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllanvGgvlafrddel... 215
                        +kl+++       gG  ++ +   ++++a++++ g  l+ D A fa  + + g++++  f +  +vt    K+l  + Gg+++++d +l   
       KIR64228.1 178 --PKLVVV-------GGSSYPRAvDFARIRAVCDEIGAYLLADIAHFAGLV-AAGVHPSP-FPHTHVVTSTTNKNLRGPRGGLILTDDPDLgrr 260
                      ..556654.......78888876369999*****************99755.77888865.778889999999***********9999988888 PP

                      .................................. CS
  Beta_elim_lyase 216 .................................e 216
                                                        
       KIR64228.1 261 ldsaifpgvqggplpefiaakavafgealrpdfR 294
                      8888888888888866666666666666665552 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.3e-05      0.26      15      42 ..     297     324 ..     291     330 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.3e-05
  LDcluster4  15 keealelaeelGrliAkegavlltGgrt 42 
                 +e +l +a++lG ++A +g+ ++tGg++
  KIR64228.1 297 AEAVLANARRLGAVLADRGYDIVTGGTD 324
                 567899********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2988.16
//
Query:       KIR64229.1  [L=420]
Description: hypothetical protein TK50_00395 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-14   51.8   0.0    1.3e-13   50.8   0.0    1.5  1  ATP-grasp_4      ATP-grasp domain
      9e-12   45.4   4.8    1.8e-11   44.4   0.9    3.3  4  ATPgrasp_N       ATP-grasp N-terminal domain
    1.6e-07   31.6   0.0    2.8e-07   30.7   0.0    1.4  1  ATP-grasp_3      ATP-grasp domain
    1.8e-06   27.8   0.1    1.9e-05   24.4   0.0    2.4  2  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
    3.9e-05   23.3   0.0    0.00035   20.2   0.0    2.3  1  ATP-grasp        ATP-grasp domain
    8.7e-05   22.1   0.0      0.058   12.9   0.0    2.3  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
     0.0015   19.0  10.6     0.0039   17.7  10.1    2.0  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
     0.0045   17.0   0.2     0.0087   16.1   0.2    1.5  1  Glyco_transf_4   Glycosyltransferase Family 4
  ------ inclusion threshold ------
      0.015   14.7   0.3      0.057   12.9   0.3    1.9  1  ATP-grasp_5      ATP-grasp domain
      0.074   12.8   0.0       0.33   10.7   0.0    1.9  1  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr


Domain annotation for each model (and alignments):
>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   7.5e-17   1.3e-13       2     156 ..     150     300 ..     149     303 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 7.5e-17
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilnilkkefaseedvsdrly 99 
                   lPv++KP +g+ S+   ++++++e  +a +++ +e+e++ + ++++    + +lvE+y+ G+ ++ ++    +G+     +  ++ a +++ ++   
   KIR64229.1 150 GLPVIVKPPSGADSILAFRADTPAEVADAARRVLDEVERLPRLMHDQFT--RGVLVEQYLIGDLVSAELGA-GNGRFYRFMLSGRPRAITNECVEMGA 244
                  68****************************************9998855..89***************988.9999999999999999999999**** PP

  ATP-grasp_4 100 vtsakvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnplrfagl 156
                  +++a+v+  t+++   + +ev ++lgl  + +HiEl v++dg+++ +E np+ ++g+
   KIR64229.1 245 FMPADVTPATADRCFAYAEEVCRALGLDLGIFHIELMVTADGPVL-VEANPRLMGGV 300
                  ******************************************998.8****999997 PP

>> ATPgrasp_N  ATP-grasp N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.9     1e-14   1.8e-11       1      82 []      17     104 ..      17     104 .. 0.85
   2 ?   -0.9   0.0       1.4   2.6e+03      73      81 ..     144     152 ..     134     157 .. 0.79
   3 ?   -0.7   0.0       1.2   2.1e+03      62      80 ..     253     271 ..     228     273 .. 0.76
   4 ?   -2.1   0.0       3.4   6.1e+03      58      76 ..     364     382 ..     361     383 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 1e-14
                 HHHHHHTT-EEEEEEET......TS-..---S-TT.EEEEEEE-TTT-HHHHHHHHHHHHHHS--SEEE---GGGHHHHHHHHHHTT-SS CS
  ATPgrasp_N   1 yeaAkaLGikvvlvdee......dew..apeelaelvekfipldlaqdpdaaleavralsrerpvdGivtftdlavplvArlaeaLgLPg 82 
                 +++A   G++v+l+++       d +  +++ la+ v++   +++a d  a++++vra+ +e+pvd+++t +++ v  +A +a++LgLP+
  KIR64229.1  17 MRRALSAGHRVTLITSTdyrmypD-NaeTAAVLAA-VHRSRRIEMASDVAALTATVRAVLAEEPVDAVITQNEFCVEATALMARELGLPF 104
                 678999**********95554432.1234444466.9****************************************************5 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.4
                 HHHHHTT-S CS
  ATPgrasp_N  73 rlaeaLgLP 81 
                 ++aea gLP
  KIR64229.1 144 AAAEAIGLP 152
                 578888888 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.2
                 ---GGGHHHHHHHHHHTT- CS
  ATPgrasp_N  62 tftdlavplvArlaeaLgL 80 
                 ++ d  + ++ ++++aLgL
  KIR64229.1 253 ATADRCFAYAEEVCRALGL 271
                 5677788888889999998 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 3.4
                 SEEE---GGGHHHHHHHHH CS
  ATPgrasp_N  58 dGivtftdlavplvArlae 76 
                 d +++f  +++ + A++ae
  KIR64229.1 364 DRVIAFDPYRLTPGAQVAE 382
                 7899999999*******98 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.6e-10   2.8e-07      28     160 ..     147     298 ..     114     299 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.6e-10
                  S--SSSEEEEESS-------B--SS--TTE.........................EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEET....TEEEE CS
  ATP-grasp_3  28 eeeekklvvKprdGaggesvrvveekeeaeaaieeve..................lvqefieGkplSvsllsdgekvlvlavnrqliekaekefvyaG 107
                  e    +++vKp +Ga++  ++ ++   e   a   v                   lv +++ G+ +S++l + + +++ ++++       ++e v  G
   KIR64229.1 147 EAIGLPVIVKPPSGADSILAFRADTPAEVADAARRVLdeverlprlmhdqftrgvLVEQYLIGDLVSAELGAGNGRFYRFMLSGRPRAI-TNECVEMG 243
                  4447789********9987777666544443333333566699***************************9999998877776444333.3468999* PP

                  EEES----H..HHHHHHHHHHHHTTSTT-.-EEEEEEEEESS.SEEEEEEESS--G CS
  ATP-grasp_3 108 nvtpietel..keevvelaeevveklegl.aGyvGvDlvlkdeepyviEvNPRltt 160
                    +p++++   ++++++ aeev+++l gl +G++ ++l+++ ++p+++E NPRl +
   KIR64229.1 244 AFMPADVTPatADRCFAYAEEVCRAL-GLdLGIFHIELMVTADGPVLVEANPRLMG 298
                  *****99887799*************.7747**********************987 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.38   6.9e+02      27      49 ..      47      66 ..      41     105 .. 0.46
   2 !   24.4   0.0     1e-08   1.9e-05      47     120 ..     256     333 ..     250     341 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.38
  ATPgrasp_Ter 27 vlaavpRrKe...kgglqelekdeel 49
                  vlaav R +    +      ++ ++l
    KIR64229.1 47 VLAAVHRSRRiemA------SDVAAL 66
                  56666666652221......222222 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 1e-08
  ATPgrasp_Ter  47 eelielaerlaeefgld.glvnvQvrededgpkLLEiNpRasGGlgysa...laGvnlpylalklllgleteeveepe 120
                   ++ + +ae++ +++gld g++ + +  ++dgp+L E NpR  GG+  s    ++Gvn+ +  l+  lg+++ee+ ++ 
    KIR64229.1 256 DRCFAYAEEVCRALGLDlGIFHIELMVTADGPVLVEANPRLMGGVMPSLyqhVTGVNIHDSLLRIHLGQPVEEPLPVA 333
                   567899**********9679************************9866422278**************8766665554 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0     2e-07   0.00035       2     155 ..     124     291 ..     123     296 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2e-07
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC..............GTTCEEEEE----SEEEEEEEEEET CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal..............keekvivEefvpfekElsvlvvrsa 86 
                 +++gl+ +r+++ ++ +e+ +aae++glpv+vK +  g d    +    ++++ +a++ +                + v+vE++   +   + l++   
  KIR64229.1 124 AAAGLASARYAVSSTVSEAVAAAEAIGLPVIVK-PPSGADSILAFRADTPAEVADAARRVldeverlprlmhdqFTRGVLVEQYLIGDLVSAELGA--G 219
                 568999***************************.888999999999999999999999888999*99**9998888999***99877765555555..4 PP

                 TC-EEE--EEE.EEEETTEEEE..EEECEE-SCHHHHHHHHHHHHHHHHHTS.SEEEEEEEEEETTCTEEEEE CS
   ATP-grasp  87 eGetafypvve.tvqedgilrl..svapaevsekaqkkaeeiakkiveeLgg.vGvfavElFvledgellvnE 155
                 +G+++ + + +      + +++   + pa+v+ + + +  ++a++++++Lg  +G+f +El v++dg +lv E
  KIR64229.1 220 NGRFYRFMLSGrPRAITNECVEmgAFMPADVTPATADRCFAYAEEVCRALGLdLGIFHIELMVTADGPVLV-E 291
                 554333333321233444444411567************************769*************9987.4 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.2e-05     0.058      16      49 ..     130     161 ..     115     208 .. 0.77
   2 !    7.0   0.0     0.002       3.5     143     209 ..     260     327 ..     245     329 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.2e-05
                  BSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCC CS
  CPSase_L_D2  16 vvpssaapvetleealaiakeigyPviikaafgl 49 
                   ++   a+ +t+ ea+a+a+ ig Pvi+k+  g 
   KIR64229.1 130 SAR--YAVSSTVSEAVAAAEAIGLPVIVKPPSGA 161
                  333..344699******************97765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.002
                  HHHHHHHHHHT-E.EEEEEEEEEETTTTEEEEEEEESS--..CCHHHHHHHHS--HHHHHHHHHTT--GC CS
  CPSase_L_D2 143 eaavkvvrevgvv.gagtveflldpkskeyyviEvNtRls..vesalaekaTGldlvkeaakialgekLe 209
                  + a +v+r++g+  g   +e ++ +  +  +++E N+Rl   v  +l +++TG+++    ++i lg++ e
   KIR64229.1 260 AYAEEVCRALGLDlGIFHIELMVTA--DGPVLVEANPRLMggVMPSLYQHVTGVNIHDSLLRIHLGQPVE 327
                  5667778888875244578888875..667899******6448899********************9976 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7  10.1   2.1e-06    0.0039      15     142 ..      21     145 ..      14     189 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.1e-06
  Glyco_trans_4_4  15 aarGheVtvltpapapgapeleedgvrvhrlpvprrpspladla.alralrrllrqrrerpdvvhahs.ptaglaarlarrrrgipl.....vv 101
                        +Gh+Vt++t+++++  p+  e  + +  +  +rr +   d+a  ++ +r++l  ++e++d v++++ +   + a+ ar   g+p+     vv
       KIR64229.1  21 LSAGHRVTLITSTDYRMYPDNAETAAVLAAVHRSRRIEMASDVAaLTATVRAVL--AEEPVDAVITQNeFCVEATALMAR-ELGLPFtdtdaVV 111
                      3578*******9999998853333333333333333333334441456778888..************888999999999.9999994444455 PP

  Glyco_trans_4_4 102 tlhglllrrgsgavrrlyralerrllrradavlvvseaeae 142
                      t++      g + + rl+  +  ++ +r ++  +vsea+a+
       KIR64229.1 112 TARHK----G-RTRERLA--AAGLASARYAVSSTVSEAVAA 145
                      44432....2.2222222..334555555555555555553 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   4.8e-06    0.0087      15     102 ..      20     107 ..      14     148 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.8e-06
  Glyco_transf_4  15 LarrGheVtvvtpgddgpleeev...elvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrlgiplVlt 102
                        +Gh+Vt++t++d +  +++     ++ +v+r   +  + +    a    +r++l +e +D v +++++++ a +l +r  lg+p+  t
      KIR64229.1  20 ALSAGHRVTLITSTDYRMYPDNAetaAVLAAVHRS--RRIEMASDVAALTATVRAVLAEEPVDAVITQNEFCVEATALMARE-LGLPFTDT 107
                     45689******999999999995433222222222..234466667778888999******************999999887.99998766 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   3.2e-05     0.057      15      54 ..     119     158 ..     112     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.2e-05
  ATP-grasp_5  15 akelleaygipvvetrlassaeeaveaaeeigypvvlKiv 54 
                  ++e l+a g+  ++  + s++ eav+aae+ig pv +K  
   KIR64229.1 119 TRERLAAAGLASARYAVSSTVSEAVAAAEAIGLPVIVKPP 158
                  677799*******************************965 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00018      0.33       7     188 ..     120     295 ..     115     298 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00018
                 HHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEE....ESC-GGGT-EEEESSHHHHHHHHHHH..CTS-TTCCCCSSEEEEE---SEEEEEEE. CS
      GARS_A   7 kdllkkagiptaeyeaftdpeeakeyieeatakalVvK....adglaagKgvivakseeealkavkei..lekkkfGeagekvviEelleGeEvslla. 98 
                 ++ l++ag+ +a+y++ + ++ea +  e+ + ++ +vK    ad + a +  + a+ ++ a ++++e+  l +  + + ++ v++E++l G+ vs    
  KIR64229.1 120 RERLAAAGLASARYAVSSTVSEAVAAAEAIGLPV-IVKppsgADSILAFRADTPAEVADAARRVLDEVerLPRLMHDQFTRGVLVEQYLIGDLVSAELg 217
                 6667888999999999999999999999999999.8883333344444444444455555555555543333445567779999999999999998640 PP

                 EECTTEEEE---BEEEEEEECCCEEEEECECEEEES-TTS-HHHHHHHHHHTHHHHHHHHHCTT---EEEEEEEEEEETTEEEEEEEESS CS
      GARS_A  99 lvdgktvkplplaqdhkrvlegDkgpnTGGmGayspapvvteellekikeeileptveglkkegipfkGvLyaglmlvedgpkvlefnvR 188
                   +g+  + + + +  +r++ ++       mGa+ pa v t+++ ++      e++  +l  +     G+ + +lm+++dgp ++e n R
  KIR64229.1 218 AGNGRFYRFMLSGR--PRAITNE----CVEMGAFMPADV-TPATADRCFA-YAEEVCRALGLD----LGIFHIELMVTADGPVLVEANPR 295
                 44555555555554..6766543....3469*****998.6777777766.688999999999....9*******************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 3371.49
//
Query:       KIR64230.1  [L=416]
Description: hypothetical protein TK50_00400 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-10   40.6  53.6    2.6e-10   39.7  41.7    2.0  2  MFS_1     Major Facilitator Superfamily
     0.0004   18.9  12.2     0.0004   18.9  12.2    2.9  3  MFS_3     Transmembrane secretion effector
      0.003   17.6   1.0     0.0096   16.0   0.3    2.2  2  DUF5538   Family of unknown function (DUF5538)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7  41.7   4.4e-14   2.6e-10       1     313 [.      19     330 ..      19     336 .. 0.72
   2 !    3.9  15.1    0.0036        21      71     166 ..     290     388 ..     289     400 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 4.4e-14
       MFS_1   1 lllaaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fasslwlllvlrvlqG 96 
                 l+ + f+s+++ ++l++al+  +++++ g  + ++gl++++ +l  +v+++++ rl dr+  r +++   l++++ +l +   f++ + ++++l v  G
  KIR64230.1  19 LWSSMFVSTIGTGLLLVALSVaYYQRS-G-EALAAGLVFAAQFLPLIVLMPIATRLCDRLPTRTLMVRLDLVSVVVSLGIGvvFGAAFLPVFLLLVARG 115
                 57899***************9566555.5.8999**************************999966666666666635555456566668888888889 PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpap 195
                 + + +  +a +++i  + p+e   r++ ll++++ lG+  g l+gg+++     r++ +++a+++ ++f + ++  ++ pp++++ s++      +   
  KIR64230.1 116 FLEMTTKSARGVAIKTYLPDELVERGNTLLNSAYFLGSTAGGLVGGVVI----GRVPVVVVAALASVGFAVSAACCRALPPAPAPGSGAGV----ASGV 206
                 999999*******************************************....67777777777777766666666777777777777777....7778 PP

       MFS_1 196 lvpawkallkdpvlw....illialllfffgfsglltllpl.ylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaal 289
                 ++  ++ l++d  l     +l+++++lf  +++++ ++lpl +l +    +++l+a+   +++++v+ ++ +++g  ++      rl + ll++l+a l
  KIR64230.1 207 WRRSLGVLRRDTELTrafsYLVATVVLFQGVNQIARVWLPLtWLGTPASGAAWLEAV---SVSGIVAGMVLVMVGLPARW-----RLPVRLLFALTAGL 297
                 8888999*****9944457788888888889999*******6445544444466666...55555554446667777755.....66666666666666 PP

       MFS_1 290 glallavtssavllll.........vlvliGfg 313
                 +l+++a+  +a++++          +++l++fg
  KIR64230.1 298 MLVPFATHRTAPAFASyfvytmvfeIVYLVSFG 330
                 666665553333333211111234433334444 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0036
       MFS_1  71 lfalg.lllll.fa.sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv 166
                 lfal+ +l+l+ fa +   + +++ ++  +   +++ ++  ++ + + + + + ++ l+++ +  G+ ++ ++ g+l++ +g +av +++a+++l  +v
  KIR64230.1 290 LFALTaGLMLVpFAtHRTAPAFASYFVYTMVFEIVYLVSFGVVLARTDQGDLPAVMVLFYGVAFSGMTVTVIAVGALTDRYGLPAVLLAVAVAALATVV 388
                 67777567777887666665666666666666788888888888889999**********************************999999999887744 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9  12.2   6.7e-08    0.0004       9     180 ..      13     181 ..       8     195 .. 0.88
   2 ?   -1.3   1.3     0.089   5.3e+02     264     327 ..     197     265 ..     194     277 .. 0.58
   3 !    2.8   1.3    0.0052        31     345     388 ..     345     388 ..     340     405 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.7e-08
       MFS_3   9 qkvFrviWiaslvsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlll 107
                  + F ++W +  vs +Gt +  va s    + s   l+  lv aa  LP+++l  +a  l D +  R +++   l+ ++vs+ + v+    +l ++lll
  KIR64230.1  13 SRPFVALWSSMFVSTIGTGLLLVALSVAYYQRSGEALAAGLVFAAQFLPLIVLMPIATRLCDRLPTRTLMVRLDLVSVVVSLGIGVVFGAAFLPVFLLL 111
                 56699*********************9999999999*********************************************************999988 PP

       MFS_3 108 altlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsyl 180
                 +   ++++    ++ a   ++   ++ + v+   +L    + +  ++G  +gGv++  v  +++ a++++ + 
  KIR64230.1 112 VARGFLEMT---TKSARGVAIKTYLPDELVERGNTLLNSAYFLGSTAGGLVGGVVIGRVPVVVVAALASVGFA 181
                 766555543...456667778888888888888899888999**************99999998888888765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.089
       MFS_3 264 GvGAilga.lllsrLRerlsserlvllaavalAlvllslalas..slwvavlvl..llgGaaWitalst 327
                 G+GA +++ +    L       +l++  +  +A v+l  ++ +  ++w+ +  l    +GaaW+ a+s 
  KIR64230.1 197 GSGAGVASgVWRRSLGVLRRDTELTRAFSYLVATVVLFQGVNQiaRVWLPLTWLgtPASGAAWLEAVSV 265
                 555543330333334333344556677677788888877776511455544333115789***999886 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.0052
       MFS_3 345 lavYltvlaGglaaGsllWGavaealsvtlaLlaaaaalllaaa 388
                 + +++ v + g++   ++ Ga++++++++  Lla a+a l++++
  KIR64230.1 345 MVLFYGVAFSGMTVTVIAVGALTDRYGLPAVLLAVAVAALATVV 388
                 56789999999*****************9999988888776554 PP

>> DUF5538  Family of unknown function (DUF5538)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.3   1.6e-06    0.0096      68     102 ..     185     220 ..     159     237 .. 0.79
   2 ?   -1.7   0.0      0.46   2.8e+03      43      71 ..     260     288 ..     250     291 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.6e-06
     DUF5538  68 lmvrsapptqrpptgsgcvsglwrkglg.lrpqtll 102
                    r+ pp+  p +g+g+ sg+wr+ lg lr +t l
  KIR64230.1 185 ACCRALPPAPAPGSGAGVASGVWRRSLGvLRRDTEL 220
                 457999*********************944666644 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.46
     DUF5538  43 lhaappsatptqtvmrpagfprrtrlmvr 71 
                 l a   s   +  v+   g+p r rl vr
  KIR64230.1 260 LEAVSVSGIVAGMVLVMVGLPARWRLPVR 288
                 55666666777778888899999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 2986.56
//
Query:       KIR64231.1  [L=152]
Description: hypothetical protein TK50_00405 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1096.42
//
Query:       KIR64232.1  [L=206]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-16   60.3   8.5    3.1e-16   59.3   8.5    1.6  1  TetR_C_14      MftR C-terminal domain
      1e-12   47.6   0.1      1e-12   47.6   0.1    2.5  3  TetR_N         Bacterial regulatory proteins, tetR family
    6.7e-05   22.6   0.7     0.0022   17.7   0.0    2.8  3  HTH_23         Homeodomain-like domain
  ------ inclusion threshold ------
      0.017   15.2   0.0      0.034   14.3   0.0    1.5  1  HTH_AraC       Bacterial regulatory helix-turn-helix proteins
      0.036   14.1   1.0       0.43   10.6   0.0    2.8  3  HTH_29         Winged helix-turn helix
       0.12   12.2   0.0       0.32   10.8   0.0    1.8  1  LacI           Bacterial regulatory proteins, lacI family
          2    8.7   6.7        7.9    6.7   0.1    3.1  4  CO_deh_flav_C  CO dehydrogenase flavoprotein C-terminal domai


Domain annotation for each model (and alignments):
>> TetR_C_14  MftR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   8.5   1.2e-19   3.1e-16       1     112 []      81     202 ..      81     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 1.2e-19
                 S-HHHHHHHHHHH.TT---GGG......HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TT.SHHHHHHHHHHHHHHHHHHHHHHH- CS
   TetR_C_14   1 lplldalreAvla.fnrvdeee......eeehrrRmrLiltvPaLqAhstlryaawrevvAefvAeRtgtdad.dlvprtvaaavlaaalaayeqwlad 91 
                 +pl++al++A l+ f   +e e       +++ + +r +l++PaLq++  ++ a +++ +A++vAeRtgtd   d++pr+vaaa+ aa+ +a++++l+ 
  KIR64232.1  81 EPLWAALTAAALEqFTPGPEVEampspaHAQWVAGVRTMLAEPALQGERLRAAAIAEAGLAAAVAERTGTDLAtDMYPRLVAAAASAAVGVAMQHYLDG 179
                 58999999999988876555441111116788888************************************666************************9 PP

                 TT..S-HHHHHHHHHHHHHH-ST CS
   TetR_C_14  92 ed..adlaelLdealdllaagla 112
                  d  ++++ l+++a++++aagl+
  KIR64232.1 180 GDppTPIERLITDAFAQVAAGLP 202
                 875688***************96 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.1     4e-16     1e-12       4      42 ..      19      57 ..      18      59 .. 0.97
   2 ?   -3.1   0.1       2.8   7.2e+03       2       9 ..      88      95 ..      87      96 .. 0.78
   3 ?   -2.0   0.4       1.3   3.2e+03      20      27 ..     142     149 ..     132     153 .. 0.58

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 4e-16
                HHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHH CS
      TetR_N  4 aArelfaerGydattvreIAkrAGvskgalYryFpsKee 42
                aA  l aerGyd++ v++IA++AGvs++++  yF+sK+e
  KIR64232.1 19 AAIHLTAERGYDNVRVEDIAEAAGVSPRTFNNYFSSKAE 57
                899**********************************87 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.8
                HHHHHHHH CS
      TetR_N  2 ldaArelf 9 
                 +aA+e f
  KIR64232.1 88 TAAALEQF 95
                68999998 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.3
                 HHHHHHHT CS
      TetR_N  20 reIAkrAG 27 
                 +++A+r G
  KIR64232.1 142 AAVAERTG 149
                 34566555 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   8.8e-07    0.0022       8      39 ..      18      53 ..       7      61 .. 0.83
   2 ?    2.4   0.1     0.056   1.4e+02      23      40 ..      60      77 ..      57      83 .. 0.86
   3 ?   -2.4   0.1       1.8   4.5e+03       4      11 ..     128     135 ..     120     138 .. 0.54

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 8.8e-07
      HTH_23  8 lrillllae....GlsvreIAreLgvsrrTvyrwlk 39
                + +++l ae      +v++IA++ gvs+rT  ++ +
  KIR64232.1 18 WAAIHLTAErgydNVRVEDIAEAAGVSPRTFNNYFS 53
                349999**99999******************99865 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.056
      HTH_23 23 IAreLgvsrrTvyrwlkr 40
                ++r+L++s rT    ++r
  KIR64232.1 60 ACRHLDRSLRTAAALRER 77
                79*********9877766 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.8
      HTH_23   4 ereRlril 11 
                 er R+ ++
  KIR64232.1 128 ERLRAAAI 135
                 33444443 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.3e-05     0.034       8      28 ..      31      51 ..      30      55 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.3e-05
                T--HHHHHHHTTSSHHHHHHH CS
    HTH_AraC  8 nltiediAdelgfSrsyFsrl 28
                n ++ediA+++g+S+++F   
  KIR64232.1 31 NVRVEDIAEAAGVSPRTFNNY 51
                789***************865 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00017      0.43      10      32 ..      27      51 ..      18      53 .. 0.80
   2 ?    0.1   0.1      0.32   8.3e+02      18      35 ..      60      77 ..      57      89 .. 0.82
   3 ?   -0.7   0.1      0.58   1.5e+03       7      28 ..     134     154 ..     129     154 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
      HTH_29 10 eGvs..tvsqiAkllglsrrtvyrw 32
                +G +  +v +iA++ g+s+rt++++
  KIR64232.1 27 RGYDnvRVEDIAEAAGVSPRTFNNY 51
                45557799**************997 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.32
      HTH_29 18 iAkllglsrrtvyrwlkr 35
                +++ l+ s rt    ++r
  KIR64232.1 60 ACRHLDRSLRTAAALRER 77
                899999999999888877 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.58
      HTH_29   7 llaeGvstvsqiAkllglsrrt 28 
                 ++ae++   + +A+++g +  t
  KIR64232.1 134 AIAEAGL-AAAVAERTGTDLAT 154
                 4566666.88888888887665 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013      0.32       3      15 ..      35      47 ..      33      57 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                HHHHHHCTS-HHH CS
        LacI  3 kDVArlAGVSkaT 15
                 D+A++AGVS  T
  KIR64232.1 35 EDIAEAAGVSPRT 47
                6*********988 PP

>> CO_deh_flav_C  CO dehydrogenase flavoprotein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         2   5.1e+03      11      34 ..      12      38 ..       7      48 .. 0.56
   2 ?    6.7   0.1    0.0031       7.9      49      85 ..      69     105 ..      58     106 .. 0.92
   3 ?    4.1   0.7      0.02        52      45      75 ..     116     146 ..     113     165 .. 0.78
   4 ?   -1.3   0.0      0.99   2.5e+03      12      27 ..     165     180 ..     157     197 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2
                   SS-ESEEEEEEEEEETTC...EECEEE CS
  CO_deh_flav_C 11 ndiaivnaAfrveleedg...kiedar 34
                      a+  aA++++ e +    ++ed+ 
     KIR64232.1 12 TRAALSWAAIHLTAERGYdnvRVEDIA 38
                   445555666666666432335666665 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0031
                    HHHHHHTTSBSSHHHHHHHHHHHHTTCHHHTCTTC-H CS
  CO_deh_flav_C  49 kaeaaLiGkplseelleeaakaleeelspasdprasa 85 
                    ++ aaL ++p +e l ++  +a+ e+++p ++++a++
     KIR64232.1  69 RTAAALRERPADEPLWAALTAAALEQFTPGPEVEAMP 105
                    6899***************************999987 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.02
                    EE-HHHHHHHTTSBSSHHHHHHHHHHHHTTC CS
  CO_deh_flav_C  45 vraekaeaaLiGkplseelleeaakaleeel 75 
                    vr   ae aL+G++l +++++ea  a++ + 
     KIR64232.1 116 VRTMLAEPALQGERLRAAAIAEAGLAAAVAE 146
                    56677999**************998877555 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.99
                    S-ESEEEEEEEEEETT CS
  CO_deh_flav_C  12 diaivnaAfrveleed 27 
                    + a+v++A+   l+++
     KIR64232.1 165 ASAAVGVAMQHYLDGG 180
                    5677888877777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1582.52
//
Query:       KIR64233.1  [L=500]
Description: FAD-dependent oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-68  231.5   0.0    2.1e-68  231.1   0.0    1.1  1  FAD_binding_3   FAD binding domain
      1e-06   28.6   7.2     0.0014   18.3   0.0    3.2  3  DAO             FAD dependent oxidoreductase
    4.8e-06   25.5   0.1      0.019   13.7   0.0    2.1  2  HI0933_like     HI0933-like protein
    1.3e-05   24.6   0.0      0.019   14.2   0.0    2.1  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    8.5e-05   22.7   0.1     0.0002   21.5   0.1    1.6  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00019   20.8   0.1      0.059   12.6   0.0    2.1  2  Amino_oxidase   Flavin containing amine oxidoreductase
    0.00021   21.8   0.0       0.13   12.9   0.0    2.3  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00067   18.8   0.6      0.072   12.2   0.1    2.3  2  FAD_binding_2   FAD binding domain
      0.001   19.1   1.2      0.062   13.3   0.1    2.4  2  NAD_binding_9   FAD-NAD(P)-binding
     0.0011   18.3   0.0     0.0021   17.3   0.0    1.4  1  Thi4            Thi4 family
     0.0011   18.1   0.3        1.3    8.0   0.0    2.3  2  Lycopene_cycl   Lycopene cyclase protein
  ------ inclusion threshold ------
      0.013   14.8   0.2      0.019   14.3   0.2    1.2  1  FAD_oxidored    FAD dependent oxidoreductase
       0.03   13.6   0.0      0.094   12.0   0.1    1.7  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.044   12.6   0.1        1.1    8.0   0.0    2.1  2  Trp_halogenase  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.1   0.0   1.6e-71   2.1e-68       2     348 ..       2     353 ..       1     354 [. 0.86

  Alignments for each domain:
  == domain 1  score: 231.1 bits;  conditional E-value: 1.6e-71
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHH.CHHCS CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradle.lessp 96 
                    +dVlI GaGp Glmla +L+ aGvr v++e+r t   +pra gl  + ++ll+ +Gl +r+  e +p + +  ++ +        ++dl+ l  +p
     KIR64233.1   2 IDVLIAGAGPNGLMLACELALAGVRPVVLERRPTPGGEPRANGLVGQVVRLLDRRGLYARLSGESSPPSPQPAFTFGA------FPLDLTvLADNP 91 
                    59***************************************************************9999877777777......9999995569** PP

                    T-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEE.EEEEEEE CS
  FAD_binding_3  97 ervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvye.agvldvl 191
                     +v  +pq +le +Lv++a+e g+++r ++ev+ l+q  + v+  + d +     +++a++lvGaDGgrStvr+ +gi+f+g  ++   ++ + v+
     KIR64233.1  92 HYVLGVPQAQLEAALVARAAELGVDLRSGHEVVDLHQRPDAVEVCLADGT-----QLTARFLVGADGGRSTVRRLVGIDFPGVTDDRSvSRTATVT 182
                    *****************************************999998874.....7**************************98873313334444 PP

                    EEC-SCCCTTC.......CEEEEECCTTEE....EEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEE....EEEEE CS
  FAD_binding_3 192 fdadlsdivep.......lvlilsaesrgv....mviPlentlerfyvqvearaekeersekfteeevkarlreivgektldveiee....vsawt 272
                    + a + d++ +        v+ + ++ r      +  P    + + +   e+ +  ++++ +++ +e++a + +  g +     ++      +  +
     KIR64233.1 183 VPASFLDPATGglrvpgyGVVPPFQHTRTPhglvAWAPFPG-RPALLTTTEWPDAPTSDDAPMELAELRASVARVLGADLPVGAPDGpgllRRLTG 277
                    44455555555788887733333333333252235555555.8999999****************************9988877765333367788 PP

                    EEEEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 273 vaqrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvdf 348
                     ++r+a +yr grv+l+GDAaH+hp  gG GlN+++qDavnL+wkLaa ++G+A + lLdtYe+err+va++vv+ 
     KIR64233.1 278 RNTRIAARYRAGRVLLVGDAAHVHPAIGGPGLNLGLQDAVNLGWKLAATVRGWAPPGLLDTYETERRPVAERVVMS 353
                    99***********************************************************************975 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.1e-06    0.0014       1      49 [.       3      51 ..       3      68 .. 0.74
   2 !   11.5   0.7   0.00013      0.17     150     298 ..     104     259 ..      95     313 .. 0.59
   3 ?    1.6   0.5      0.13   1.7e+02     168     229 ..     326     382 ..     240     478 .. 0.52

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.1e-06
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglr 49
                dv+i G+G  Gl  A eLa +g   ++le+++ +g g   r+ gl+ + +r
  KIR64233.1  3 DVLIAGAGPNGLMLACELALAGvrPVVLERRPTPG-GE-PRANGLVGQVVR 51
                8*********************9********7777.54.455555555444 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00013
                 HHHHHHHHHTT-EEEESECEEEE.EEEETCEEEEE..EECTEEE.EEEEEEEE--GGGHH..HHHTTCTT.....TSEEEEEEEEEEEEEECCT.HSTG CS
         DAO 150 aalaraaealGveilegtevtgl.eeedgkvwgve..rttpgen.daadavVnaaGawsd..llgllkel.....dlpispvrgqvlvlkplse.klvs 236
                 aal ++a++lGv+++ g+ev++l +++d  +++v   +   g++ + a+ +V a G  s+   l  +++      d   + v  +  v+ p s   +  
  KIR64233.1 104 AALVARAAELGVDLRSGHEVVDLhQRPD--AVEVClaD---GTQlT-ARFLVGADGGRSTvrRL--VGIDfpgvtDD--RSVSRTATVTVPASFlDPAT 192
                 79999*****************725554..44553332...77744.599**999999864422..22222222322..23333333333555522222 PP

                 SGCSEEEEE.........EEETTTTEEEEEETTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGG CS
         DAO 237 paailpvpe.........tdddgrgvyvtprkdgrvlvGgtadeesgdddpevdeedidellealrklfPq 298
                    +l vp          t+++++ v   p ++   l+ +t+ +++++++ +  + +++el+ ++++++ +
  KIR64233.1 193 --GGLRVPGygvvppfqhTRTPHGLVAWAPFPGRPALLTTTE-WPDAPTS-DDAPMELAELRASVARVLGA 259
                 ..3333333444444445555555555555553335555554.5555555.56666777777777777644 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.13
                 CEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHHHH.HTTCTTTSEEEEEEEEEEEEEE CS
         DAO 168 evtgleeedgkvwgverttpgendaadavVnaaGawsdll.gllkeldlpispvrgqvlvlkp 229
                 +v+g  ++ g + +   +t +++  a+ vV+++ a+s l+ +++++    ++++ ++ l+l +
  KIR64233.1 326 TVRGW-APPGLLDTY--ET-ERRPVAERVVMSTQAQSALIgPGDEIT--GLRQLFAELLRLPE 382
                 46665.333444444..22.222233566666666666553222222..33445555555522 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.5e-05     0.019       2      36 ..       3      37 ..       2      44 .. 0.93
   2 !    9.7   0.0   0.00023       0.3     113     167 ..     104     157 ..      98     163 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 dv++ G+G+ Glm A ++a +g r ++le+ +++g
   KIR64233.1  3 DVLIAGAGPNGLMLACELALAGVRPVVLERRPTPG 37
                 89***************************998887 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00023
                  HHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS- CS
  HI0933_like 113 dallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSi 167
                   al++++ e gv+lr  +ev +++++ d  ++v + ++++l+a+ lv A GG S 
   KIR64233.1 104 AALVARAAELGVDLRSGHEVVDLHQRPDA-VEVCLADGTQLTARFLVGADGGRST 157
                  6899*******************998888.999999*****************96 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00093       1.2     145     177 ..       4      36 ..       2      63 .. 0.74
   2 !   14.2   0.0   1.5e-05     0.019     167     239 ..      83     156 ..      70     173 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00093
                  EEEES-SHHHHHHHHHHHHHT-EEEEEESSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 145 ivvvGgGyiGvElAaalaklgkevtlveardrl 177
                  +++ G+G+ G+ lA++la +g++ +++e+r+++
   KIR64233.1   4 VLIAGAGPNGLMLACELALAGVRPVVLERRPTP 36 
                  567777777777777777777776667777665 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.5e-05
                  EEEEEESSSSSS.TTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEE CS
                  xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 167 evtlveardrll.raldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrp 239
                  + t++ ++++ +    + +l+aal ++  + Gv+++ g++v+++ ++++ +ev l dg+++ a+ +v a G r 
   KIR64233.1  83 DLTVLADNPHYVlGVPQAQLEAALVARAAELGVDLRSGHEVVDLHQRPDAVEVCLADGTQLTARFLVGADGGRS 156
                  56777788887766677899***********************************************9998765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   1.6e-07    0.0002       1      34 [.       6      39 ..       6      52 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.6e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGr 34
                   I GaG  Gl +A++La ag++ ++le+r+ +GG 
     KIR64233.1  6 IAGAGPNGLMLACELALAGVRPVVLERRPTPGGE 39
                   67******************************95 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0048       6.1       3      28 ..      13      38 ..      12      41 .. 0.98
   2 !   12.6   0.0   4.6e-05     0.059     211     257 ..     101     149 ..      88     151 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0048
                   HHHHHHHHHHTTEEEEEEESSSSSBT CS
  Amino_oxidase  3 GLaaArqLlsaGfdVtvlEardrvGG 28
                   GL+ A +L+ aG++ +vlE r+ +GG
     KIR64233.1 13 GLMLACELALAGVRPVVLERRPTPGG 38
                   9************************9 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.6e-05
                    HHHHHHHH..TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEE CS
  Amino_oxidase 211 qlpealae..elrgldirlntrVkeikregdgvtvtledgevveaDaVv 257
                    ql  al +   ++g+d+r +++V ++++ +d v v l dg++++a+  v
     KIR64233.1 101 QLEAALVAraAELGVDLRSGHEVVDLHQRPDAVEVCLADGTQLTARFLV 149
                    566666666678*******************************998866 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0    0.0001      0.13       2      35 ..       4      37 ..       3      51 .. 0.90
   2 !    6.5   0.0    0.0095        12      38      76 ..      98     135 ..      77     140 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.0001
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                v++ G+G  gl+lA++la  g +  v+er++++ 
  KIR64233.1  4 VLIAGAGPNGLMLACELALAGVRPVVLERRPTPG 37
                89****************************9987 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0095
                 SSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEE CS
   Pyr_redox  38 lDeeaskilqeklekngievllntkveeiegsedgvesv 76 
                   ++++++l  +  ++g++++ +++v+ +++ +d ve v
  KIR64233.1  98 PQAQLEAALVARAAELGVDLRSGHEVVDLHQRPDAVE-V 135
                 5568899999***********************9754.5 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   5.7e-05     0.072       1      36 [.       3      38 ..       3      57 .. 0.90
   2 !    4.9   0.1    0.0091        12     135     178 ..      94     137 ..      46     164 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.7e-05
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36
                   Dv++ G+G  GL+ A e+a aG + +v+e  +  gg
     KIR64233.1  3 DVLIAGAGPNGLMLACELALAGVRPVVLERRPTPGG 38
                   9***************************99887665 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0091
                    ....HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEE CS
  FAD_binding_2 135 etlvtghallarlvesarkagvdfqerteadeLivedgrvtGav 178
                    +  v+  +l a+lv++a ++gvd++  +e+++L ++ + v  + 
     KIR64233.1  94 VLGVPQAQLEAALVARAAELGVDLRSGHEVVDLHQRPDAVEVCL 137
                    6667788999***********************88777665443 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2     0.027        35       2      17 ..       6      21 ..       5      38 .. 0.88
   2 !   13.3   0.1   4.9e-05     0.062     105     154 ..     104     153 ..      91     155 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.027
  NAD_binding_9  2 ivGaGprGlavlerLl 17
                   i GaGp Gl+++ +L+
     KIR64233.1  6 IAGAGPNGLMLACELA 21
                   89**********9997 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 4.9e-05
  NAD_binding_9 105 eellarlpegvtvevh.raevvdleeradgqavlladgaslaadaVvLAlG 154
                    ++l+ar+ +++ v++   +evvdl++r+d ++v+ladg++l+a+ +v A G
     KIR64233.1 104 AALVARA-AELGVDLRsGHEVVDLHQRPDAVEVCLADGTQLTARFLVGADG 153
                    4455555.45667776256************************99987755 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.7e-06    0.0021      18      59 ..       2      42 ..       1      52 [. 0.89

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.7e-06
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTT CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspGGGawl 59
                 Dv+i GaG+ GL  a  la + +++ ++ler+ +pGG    
  KIR64233.1  2 IDVLIAGAGPNGLMLACELALA-GVRPVVLERRPTPGGEPRA 42
                59********************.**************97554 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1     0.001       1.3       1      31 [.       3      31 ..       3      41 .. 0.81
   2 !    8.0   0.0     0.001       1.3      84     145 ..      97     157 ..      86     170 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.001
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlie 31
                   Dv++ GaGp gl lA +l  a +g++ v++e
     KIR64233.1  3 DVLIAGAGPNGLMLACEL--ALAGVRPVVLE 31
                   9*****************..66666666665 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.001
  Lycopene_cycl  84 vsskrlkeellerlvengvkllea.kvesveeeeageslvvleggrkirarlvvdarglaslk 145
                    v +++l++ l  r +e gv l+++  v   ++ ++  + v+l++g ++ ar+ v a g ++++
     KIR64233.1  97 VPQAQLEAALVARAAELGVDLRSGhEVVDLHQRPD-AVEVCLADGTQLTARFLVGADG-GRST 157
                    66789***************999835888888998.9********************9.5554 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   1.5e-05     0.019       1      40 [.       3      42 ..       3      66 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGllts 40
                  Dv++ G+gp G++ A   a aG + +++e+r+  GG   +
    KIR64233.1  3 DVLIAGAGPNGLMLACELALAGVRPVVLERRPTPGGEPRA 42
                  9***********************************8643 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   7.3e-05     0.094       1      30 [.       5      33 ..       5      37 .. 0.91
   2 ?   -1.6   0.0         1   1.3e+03     227     273 ..     115     160 ..      98     174 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.3e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 +I GaGP Gl  a+el  ag+ + ++lE+ 
   KIR64233.1  5 LIAGAGPNGLMLACELALAGV-RPVVLERR 33
                 699******************.678***96 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1
  Pyr_redox_3 227 ikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsf 273
                  +++ + +ev +++++   ++v  +dg+++++  + v a G +++++ 
   KIR64233.1 115 VDLRSGHEVVDLHQRPDAVEVCLADGTQLTA-RFLVGADGGRSTVRR 160
                  7778888888999999999999999988775.666777777777665 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.041        53       1      22 [.       3      24 ..       3      37 .. 0.85
   2 ?    8.0   0.0    0.0009       1.1     147     212 ..      93     157 ..      81     164 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.041
                    EEEEE--SHHHHHHHHHHHHHT CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakal 22
                    +++i+G+G+ G + A+ la a+
      KIR64233.1  3 DVLIAGAGPNGLMLACELALAG 24
                    699*************998776 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0009
                     -EEEE-HHHHHHHHHHHHHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG-I CS
  Trp_halogenase 147 yAyhldaalyakfLrrvaearGvtrvegkvvevqldedgrveslrledgreveadlfiDcsGfrgl 212
                     y + + +a+++  L + a + Gv+ ++g+   v+l+++ +  ++ l+dg+++ a++ + + G r+ 
      KIR64233.1  93 YVLGVPQAQLEAALVARAAELGVDLRSGHE-VVDLHQRPDAVEVCLADGTQLTARFLVGADGGRST 157
                     55666788899999999**********986.5888886667789999***************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3544.45
//
Query:       KIR64234.1  [L=939]
Description: hypothetical protein TK50_00430 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-26   90.5  26.1    1.3e-07   31.8   0.5    4.6  4  TPR_12    Tetratricopeptide repeat
    1.2e-13   50.0  19.5       0.14   12.3   0.0    7.7  7  TPR_2     Tetratricopeptide repeat
    1.7e-13   50.7   0.1    1.5e-12   47.6   0.1    2.2  1  CHAT      CHAT domain
    7.5e-10   38.7   0.7      0.019   14.4   0.0    3.1  3  SNAP      Soluble NSF attachment protein, SNAP
    1.5e-09   37.2   1.3      0.088   12.7   0.0    6.3  6  TPR_1     Tetratricopeptide repeat
    6.8e-08   32.2  12.4    8.2e-06   25.4   1.9    2.6  3  TPR_MalT  MalT-like TPR region
    1.9e-06   27.5  25.5      0.048   13.5   0.1    6.9  7  TPR_10    Tetratricopeptide repeat
    5.8e-06   26.1   0.0      0.015   15.0   0.0    3.8  4  RPN7      26S proteasome subunit RPN7
     0.0012   18.9   0.2         26    5.3   0.0    4.9  5  TPR_8     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.4   9.1       0.93    9.2   0.4    4.5  5  TPR_11    TPR repeat
      0.036   14.1  12.1         23    5.3   0.0    6.2  6  TPR_7     Tetratricopeptide repeat
       0.11   13.2  52.8      0.093   13.4   0.6    7.7  9  TPR_16    Tetratricopeptide repeat
       0.17   11.3   1.0        2.4    7.7   0.0    2.8  3  SHNi-TPR  SHNi-TPR
        3.5    8.5  38.3       0.33   11.7   0.2    9.1  8  TPR_4     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.5   9.8e-11   1.3e-07       8      76 ..     475     541 ..     468     542 .. 0.90
   2 !   29.4   2.6   5.6e-10   7.1e-07       8      76 ..     555     621 ..     548     622 .. 0.93
   3 !   21.1   3.8   2.3e-07   0.00029       8      73 ..     639     703 ..     633     705 .. 0.89
   4 !   21.3   0.2   1.9e-07   0.00024       3      55 ..     715     765 ..     713     771 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 9.8e-11
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                   +++ + + +++eA+e++  al+++++  +p+   +a +  n g + + lg++eeA ++++ al +++
  KIR64234.1 475 AAGVAAFGRADWQEAREHYLVALAAFTACGDPKG--VADATTNVGNTAYFLGDLEEAADRYRTALPLYR 541
                 5677778899*******************88887..*******************************98 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 5.6e-10
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 nl++v +++g++d A e +++a e+   l G+ +  +a tl nLg ++ +lgr+  Ale+l +a a+++
  KIR64234.1 555 NLGNVSFQRGELDVAAEQYRAAAEAL--LRGGFRRHAADTLVNLGAVLIELGRPHLALEHLDQAGALYR 621
                 9*************************..78899999****************************88887 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 2.3e-07
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 n +++l+  + ++ A+++l  al+ ++ + +p  + +a++ +nLg + +++g++ eA+ ++  al+
  KIR64234.1 639 NTGLALAGVKSFERARAHLLSALRHWQ-AGEPSAERAARANHNLGLVAFRAGDLPEAQLRYGLALE 703
                 567888888999**************6.568999**************************998887 PP

  == domain 4  score: 21.3 bits;  conditional E-value: 1.9e-07
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrly 55 
                 a a   l++v r++g+   A++++++a e +rr+  ++++++a++ +n g ++
  KIR64234.1 715 ADARLGLGTVARHRGDVSGARSNFRQAQEHYRRT--GQWLAYAQAAFNEGLTH 765
                 677779****************************..**************986 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.4    0.0033       4.2       7      29 ..     476     498 ..     470     501 .. 0.88
   2 !    9.5   0.0   0.00086       1.1       6      28 ..     515     537 ..     510     542 .. 0.89
   3 !    9.1   0.4    0.0012       1.5       6      29 ..     555     578 ..     554     580 .. 0.94
   4 !   12.3   0.0   0.00011      0.14       1      31 [.     590     620 ..     590     622 .. 0.91
   5 ?    1.1   0.1      0.43   5.5e+02       7      29 ..     640     662 ..     638     663 .. 0.87
   6 !   11.2   0.1   0.00026      0.34       1      30 [.     675     704 ..     675     707 .. 0.91
   7 !    6.7   0.0     0.007         9       2      31 ..     716     745 ..     715     748 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0033
       TPR_2   7 lGlayyklgdyeeAleafekAle 29 
                  G a++ + d++eA+e++  Al+
  KIR64234.1 476 AGVAAFGRADWQEAREHYLVALA 498
                 69999999**********99997 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00086
       TPR_2   6 nlGlayyklgdyeeAleafekAl 28 
                 n G+ +y lgd+eeA++ ++ Al
  KIR64234.1 515 NVGNTAYFLGDLEEAADRYRTAL 537
                 789******************98 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0012
       TPR_2   6 nlGlayyklgdyeeAleafekAle 29 
                 nlG++ +++g+++ A+e +++A e
  KIR64234.1 555 NLGNVSFQRGELDVAAEQYRAAAE 578
                 8********************987 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 0.00011
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 a+ l nlG ++++lg++  Ale++++A +l+
  KIR64234.1 590 ADTLVNLGAVLIELGRPHLALEHLDQAGALY 620
                 67899**********************8886 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.43
       TPR_2   7 lGlayyklgdyeeAleafekAle 29 
                  Gla++  + +e+A++++  Al+
  KIR64234.1 640 TGLALAGVKSFERARAHLLSALR 662
                 6889999999********99997 PP

  == domain 6  score: 11.2 bits;  conditional E-value: 0.00026
       TPR_2   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 a+a++nlGl+++++gd+ eA   +  Ale+
  KIR64234.1 675 ARANHNLGLVAFRAGDLPEAQLRYGLALEH 704
                 7899****************9999999986 PP

  == domain 7  score: 6.7 bits;  conditional E-value: 0.007
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleld 31 
                 +a   lG +++++gd   A+  f++A e++
  KIR64234.1 716 DARLGLGTVARHRGDVSGARSNFRQAQEHY 745
                 566789********************9987 PP

>> CHAT  CHAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.1   1.1e-15   1.5e-12       3     243 ..     120     364 ..     118     365 .. 0.79

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 1.1e-15
                 xxxxxxxxxxxx.xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xx RF
        CHAT   3 saraLydlliaP.leael..dgqsvrqlvivpdgeLqliPfealvdpdg..rylleryavsyapsarllselrkaaasaasalq.lvvgdpkfdaa.el 94 
                  +r+L  +l+   l+++l  +++  ++lv++p + L ++P+e+lv +d+    l+er +v   +s+ ll+ l++ a   a + + + v dp++  + + 
  KIR64234.1 120 LCRELGGILLPQeLRDRLrtSHADDTTLVVAPGPGLSSVPWELLVIDDDhdVRLVERASVLGGVSPALLVNLARPALPWAGGGRaVRVVDPTAAGSrAG 218
                 57899999999779999954444445*****************9988888899**********************999998876777888887743133 PP

                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx.xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxxxxx. RF
        CHAT  95 lrklvfpelpgteaE.aeaiakllaegelkvllgeaa....tesalksals.rryrvvHfatHgvfn.anpplqsglvlsaense.edglLtaeeile. 184
                   ++ ++  p++ +                 llg+ a    ++++l ++l+ +++  + f++H++++ +  p + gl l+ +  e  d+ Lta + l+ 
  KIR64234.1 219 GGRIYPDGVPEAWRSrSGDD---------DALLGAGAtmgcSPTELAATLQaEEWARLVFVGHASATdPAMPTSAGLELAVDV-EiGDSRLTAGQWLRe 307
                 34444455555444433333.........444444443344677788888889**************7777888888886444.469******999997 PP

                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CHAT 185 .lnldgaelVvLsACqtglgevidgegvlgLaralllaGarsviaslwpVddeatalLmk 243
                   ++++++ V + ACq+      +  + +gL+ a+l aGar+via++w+ + +++++L++
  KIR64234.1 308 pARWPAPRRVGFVACQSD---DAGYAEQIGLTLAALNAGARTVIATRWSLPSDGSERLVA 364
                 889999************...3388899***************************99975 PP

>> SNAP  Soluble NSF attachment protein, SNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2     4e-05     0.051      77     178 ..     473     573 ..     462     573 .. 0.74
   2 !   14.4   0.0   1.5e-05     0.019      85     186 ..     561     657 ..     557     669 .. 0.82
   3 !   10.5   0.0   0.00023      0.29      85     149 ..     686     749 ..     669     760 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4e-05
                 HHHHHHHHHHHT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH CS
        SNAP  77 ayveAakcykkvspeeAvealekAieiytekgrfrraAklkkeiaelyekelgdlekAieaYekAaelyeqeeakalankcllkvAelsaelekyekAi 175
                 +++    ++ + + +eA e++  A + +t  g  +  A+ + ++++      gdle+A + Y++A  ly++ +   ++  + +++ ++s + ++++ A+
  KIR64234.1 473 SLAAGVAAFGRADWQEAREHYLVALAAFTACGDPKGVADATTNVGNTAYFL-GDLEEAADRYRTALPLYRDLGLDRQTAVVGQNLGNVSFQRGELDVAA 570
                 444445677788888888888888888888888888888888888887765.88888888888888888887777777777777777777777777777 PP

                 HHH CS
        SNAP 176 eiy 178
                 e y
  KIR64234.1 571 EQY 573
                 766 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.5e-05
                 HHHT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
        SNAP  85 ykkvspeeAvealekAieiytekgrfrraAklkkeiaelyekelgdlekAieaYekAaelyeqeeakalankcllkvAelsaelekyekAieiyekvak 183
                 +++ + + A+e++++A+e +++ g  r aA+   +++ ++ + lg+ + A+e+ ++A+ ly++     + +++  k+Ael  + +   + ++ +e+  +
  KIR64234.1 561 FQRGELDVAAEQYRAAAEALLRGGFRRHAADTLVNLGAVLIE-LGRPHLALEHLDQAGALYRET---CDESELGGKLAELDQNTGLALAGVKSFERA-R 654
                 66778889******************************9985.5*****************875...555667788888888888888888888874.4 PP

                 TTS CS
        SNAP 184 ksl 186
                 + l
  KIR64234.1 655 AHL 657
                 444 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00023
                 HHHT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT CS
        SNAP  85 ykkvspeeAvealekAieiytekgrfrraAklkkeiaelyekelgdlekAieaYekAaelyeqee 149
                 ++  +  eA   +  A e++ + g+ ++aA+    ++ +  +  gd++ A +++++A e y+  +
  KIR64234.1 686 FRAGDLPEAQLRYGLALEHFHTVGNEHEAADARLGLGTVARHR-GDVSGARSNFRQAQEHYRRTG 749
                 556677788888999**************************99.*****************9766 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.1   2.7e+03       8      24 ..     477     493 ..     477     494 .. 0.82
   2 !    8.0   0.0    0.0021       2.6       1      32 [.     510     541 ..     510     543 .. 0.87
   3 ?    1.7   0.1       0.2   2.6e+02       6      27 ..     555     576 ..     554     578 .. 0.88
   4 !   12.7   0.0   6.9e-05     0.088       1      27 [.     590     616 ..     590     616 .. 0.96
   5 ?    3.7   0.0     0.047        61       1      20 [.     675     694 ..     675     707 .. 0.87
   6 ?    3.2   0.0     0.067        86       1      31 [.     715     745 ..     715     747 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.1
                 HHHHHHTT-HHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyy 24 
                 G+a f   +++eA e+y
  KIR64234.1 477 GVAAFGRADWQEAREHY 493
                 6677777799******9 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnP 32 
                 a+a  n Gn+ + lg+++eA + y+ AL l+ 
  KIR64234.1 510 ADATTNVGNTAYFLGDLEEAADRYRTALPLYR 541
                 5677899***************9999997765 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.2
                 HHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekA 27 
                 nlGn+ f+ g++d A e y+ A
  KIR64234.1 555 NLGNVSFQRGELDVAAEQYRAA 576
                 9***********9999988877 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 6.9e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekA 27 
                 a++l nlG+++ +lg++  Ale+ ++A
  KIR64234.1 590 ADTLVNLGAVLIELGRPHLALEHLDQA 616
                 7899********************998 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.047
                 HHHHHHHHHHHHHTT-HHHH CS
       TPR_1   1 akalynlGnayfklgkydeA 20 
                 a+a  nlG++ f+ g++ eA
  KIR64234.1 675 ARANHNLGLVAFRAGDLPEA 694
                 56778************999 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.067
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALeln 31 
                 a+a  +lG + ++ g+   A   +++A e++
  KIR64234.1 715 ADARLGLGTVARHRGDVSGARSNFRQAQEHY 745
                 6888899999999999999999999998875 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   1.9   6.4e-09   8.2e-06      44     194 ..     474     623 ..     465     628 .. 0.84
   2 !   16.0   4.6   4.8e-06    0.0062      45     181 ..     555     695 ..     550     696 .. 0.84
   3 !   11.2   3.1   0.00013      0.17      17     114 ..     650     749 ..     642     758 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 6.4e-09
    TPR_MalT  44 avlGeasllqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAe 142
                 ++ G a++ + d ++A++++  a ++  +++ ++ ++ a++ +++++   G+L+eA++ y+ al l+++ gl ++ +v      l+++ + +++L+ A+
  KIR64234.1 474 LAAGVAAFGRADWQEAREHYLVALAAFTACGDPKGVADATTNVGNTAYFLGDLEEAADRYRTALPLYRDLGLDRQTAVVGQ--NLGNVSFQRGELDVAA 570
                 456889999999999999999999999999999999999999999999999999999999999999999999987655554..6899999999999777 PP

    TPR_MalT 143 qhlqeGie.lleqlepeaaldayvllarialaqGdleeAetllekaeelares 194
                 +  +++ e ll+ + +++a+d +v l  + +  G+   A++ l++a +l+re+
  KIR64234.1 571 EQYRAAAEaLLRGGFRRHAADTLVNLGAVLIELGRPHLALEHLDQAGALYRET 623
                 77777777355666888899999999999999999999999999999999875 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 4.8e-06
    TPR_MalT  45 vlGeasllqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqql...plvgfllvlladllyEwndLee 140
                 +lG +s+ +G+l+ A +++++a +++++ +  + a+ +l+ ++ +l++ Gr h Ale+  qa +l++e++ +      l+++     +  l     +e+
  KIR64234.1 555 NLGNVSFQRGELDVAAEQYRAAAEALLRGGFRRHAADTLVNLGAVLIELGRPHLALEHLDQAGALYRETCDESElggKLAELD-QNTGLALAGVKSFER 652
                 79******************99999999999999**********************************997753221233333.3447778888999** PP

    TPR_MalT 141 AeqhlqeGielleqlep..eaaldayvllarialaqGdleeAe 181
                 A+ hl+ +++  + +ep  e+a++a+  l  +a+  Gdl eA+
  KIR64234.1 653 ARAHLLSALRHWQAGEPsaERAARANHNLGLVAFRAGDLPEAQ 695
                 ******9999999985534888899999999999999999886 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00013
    TPR_MalT  17 aeralelArqALallpeddllar..iaatavlGeasllqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheAletyeqalqlateq 113
                 +era+++   AL + +  +  a   + a+ +lG +++ +Gdl++A+ ++  a ++    ++ h a+ a l+++ +++++G+   A   ++qa+++++++
  KIR64234.1 650 FERARAHLLSALRHWQAGEPSAEraARANHNLGLVAFRAGDLPEAQLRYGLALEHFHTVGNEHEAADARLGLGTVARHRGDVSGARSNFRQAQEHYRRT 748
                 677788888888887776666552345666789999999999999999999999999999999999999999999999999999999999999988877 PP

    TPR_MalT 114 g 114
                 g
  KIR64234.1 749 G 749
                 5 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.3      0.28   3.6e+02       9      30 ..     477     498 ..     476     500 .. 0.84
   2 !   12.1   0.0   0.00011      0.14       1      34 [.     509     542 ..     509     544 .. 0.94
   3 !    9.0   0.4   0.00098       1.3       6      30 ..     554     578 ..     549     582 .. 0.88
   4 !   13.5   0.1   3.7e-05     0.048       2      36 ..     590     624 ..     589     627 .. 0.94
   5 ?   -3.3   0.0       7.7   9.9e+03      10      29 ..     642     661 ..     641     665 .. 0.78
   6 ?    3.8   0.4     0.043        55       2      22 ..     675     695 ..     674     703 .. 0.88
   7 ?    1.9   0.1      0.17   2.2e+02       3      28 ..     716     741 ..     715     748 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.28
      TPR_10   9 analrqrgrydeAealleeala 30 
                 ++a + r +++eA++++  ala
  KIR64234.1 477 GVAAFGRADWQEAREHYLVALA 498
                 566677899********99987 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00011
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrr 34 
                 +A + +N +n+ + +g+++eA + ++ al ++r 
  KIR64234.1 509 VADATTNVGNTAYFLGDLEEAADRYRTALPLYRD 542
                 688999*************************996 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00098
      TPR_10   6 nNLanalrqrgrydeAealleeala 30 
                  NL+n+ +qrg++d A + ++ a +
  KIR64234.1 554 QNLGNVSFQRGELDVAAEQYRAAAE 578
                 6********************9977 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 3.7e-05
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrrll 36 
                 A +l NL+++l ++gr + A+++l++a a++r+++
  KIR64234.1 590 ADTLVNLGAVLIELGRPHLALEHLDQAGALYRETC 624
                 889**************************999975 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 7.7
      TPR_10  10 nalrqrgrydeAealleeal 29 
                  al  ++ +++A+a+l  al
  KIR64234.1 642 LALAGVKSFERARAHLLSAL 661
                 67777888999999988887 PP

  == domain 6  score: 3.8 bits;  conditional E-value: 0.043
      TPR_10   2 AsslnNLanalrqrgrydeAe 22 
                 A++ +NL+ + ++ g++ eA 
  KIR64234.1 675 ARANHNLGLVAFRAGDLPEAQ 695
                 7899***************95 PP

  == domain 7  score: 1.9 bits;  conditional E-value: 0.17
      TPR_10   3 sslnNLanalrqrgrydeAealleea 28 
                  ++  L+ + r+rg+  +A+  +++a
  KIR64234.1 716 DARLGLGTVARHRGDVSGARSNFRQA 741
                 566679**************999998 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.65   8.3e+02       8      39 ..      54      85 ..      50      92 .. 0.84
   2 ?    0.1   0.0      0.46   5.9e+02     111     145 ..     468     502 ..     462     516 .. 0.85
   3 !   15.0   0.0   1.2e-05     0.015      26     142 ..     540     663 ..     524     672 .. 0.84
   4 ?    4.9   0.0     0.015        19      33     121 ..     672     763 ..     665     767 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.65
                HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH CS
        RPN7  8 lrkknekeleeLdaelkdakenlgkeeirrak 39
                l ++ +++l++Ld++++da     + +++ a 
  KIR64234.1 54 LVATERATLADLDRRIRDAVPRDDDASMASAI 85
                56788899***********9999999998876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.46
                 HHHHHHHHHHHHHHHTT-HHHHHHHHCTS-GGGT. CS
        RPN7 111 rknrlkvyeGlallairkfkeAaellldilstfts 145
                   ++ + ++G+a+    +++eA e+ l +l+ ft+
  KIR64234.1 468 EVAKSSLAAGVAAFGRADWQEAREHYLVALAAFTA 502
                 55788899********************9999987 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 1.2e-05
                 HHHTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCCC--SHH...HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHCSSS---.....HHHHHHHHH CS
        RPN7  26 akenlgkeeirrakldlaehYlkigdleeAlkaysrireyctslk...hkidmllnlirvaiffndwdlvskylekakellekggd....werknrlkv 117
                 +++ + + +++   ++l++  ++ g+l+ A + y+++ e +   +   h +d l+nl  v i+++  +l+ ++l++a +l+ +++d        + l +
  KIR64234.1 540 YRDLGLDRQTAVVGQNLGNVSFQRGELDVAAEQYRAAAEALLRGGfrrHAADTLVNLGAVLIELGRPHLALEHLDQAGALYRETCDeselGGKLAELDQ 638
                 5556666777777789999999**************99999987544499************************************5544445788*** PP

                 HHHHHHHHTT-HHHHHHHHCTS-GG CS
        RPN7 118 yeGlallairkfkeAaellldilst 142
                   Glal+ ++ f++A  +ll++l  
  KIR64234.1 639 NTGLALAGVKSFERARAHLLSALRH 663
                 ********************98765 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCCC--SHHH...HHHHHHHHHHHHHHTT-HHHHHHHHHHHHCSSS---.HHHHHHHHHHHHH CS
        RPN7  33 eeirrakldlaehYlkigdleeAlkaysrireyctslkh...kidmllnlirvaiffndwdlvskylekakellekggdwerknrlkvyeGl 121
                 e  +ra+++l+   +++gdl eA+  y  ++e+  + ++    +d  l l  va  ++d + + ++  +a+e + ++g+w + ++    eGl
  KIR64234.1 672 ERAARANHNLGLVAFRAGDLPEAQLRYGLALEHFHTVGNeheAADARLGLGTVARHRGDVSGARSNFRQAQEHYRRTGQWLAYAQAAFNEGL 763
                 66799***********************9999887776522256888999999999999999999999999999999999888888777777 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.078     1e+02       5      28 ..     514     537 ..     510     542 .. 0.83
   2 ?    2.2   0.0       0.2   2.6e+02       6      29 ..     555     578 ..     554     579 .. 0.92
   3 ?    5.3   0.0     0.021        26       1      27 [.     590     616 ..     590     621 .. 0.92
   4 ?    0.9   0.0      0.53   6.8e+02       1      20 [.     675     694 ..     675     703 .. 0.87
   5 ?   -2.4   0.0       6.4   8.2e+03       2      28 ..     716     742 ..     715     743 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.078
                 HHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekal 28 
                  n g++   lgd+eeA   y+ al
  KIR64234.1 514 TNVGNTAYFLGDLEEAADRYRTAL 537
                 5789999*********98888776 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.2
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekale 29 
                 nlg++ ++ g+++ A e y+ a e
  KIR64234.1 555 NLGNVSFQRGELDVAAEQYRAAAE 578
                 89******************9976 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.021
                 CCHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyeka 27 
                 a+ ++nlg ++++lg+ + A e + +a
  KIR64234.1 590 ADTLVNLGAVLIELGRPHLALEHLDQA 616
                 67899****************999887 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.53
                 CCHHHHHHHHHHHTT-HHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeA 20 
                 a+a +nlg++ +  gd+ eA
  KIR64234.1 675 ARANHNLGLVAFRAGDLPEA 694
                 799**********9998666 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 6.4
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 +a + lg + +  gd   A + +++a 
  KIR64234.1 716 DARLGLGTVARHRGDVSGARSNFRQAQ 742
                 667778899999999999999999996 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.7   3.4e+03       9      21 ..     485     497 ..     485     498 .. 0.84
   2 ?    8.1   0.1    0.0016         2       1      21 [.     517     537 ..     517     542 .. 0.87
   3 ?    9.2   0.4   0.00073      0.93       1      21 [.     557     577 ..     557     579 .. 0.94
   4 ?   -2.1   0.0       2.5   3.2e+03      28      42 .]     590     604 ..     587     616 .. 0.70
   5 ?   -0.5   0.0      0.79     1e+03      27      42 .]     674     689 ..     672     689 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.7
      TPR_11   9 kyeeAieaYkkAl 21 
                 ++ eA e+Y  Al
  KIR64234.1 485 DWQEAREHYLVAL 497
                 589******9887 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0016
      TPR_11   1 GdayyeqGkyeeAieaYkkAl 21 
                 G+  y +G++eeA  +Y++Al
  KIR64234.1 517 GNTAYFLGDLEEAADRYRTAL 537
                 6777889*************8 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00073
      TPR_11   1 GdayyeqGkyeeAieaYkkAl 21 
                 G++ +++G+++ A e+Y++A 
  KIR64234.1 557 GNVSFQRGELDVAAEQYRAAA 577
                 9999***************96 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 2.5
      TPR_11  28 aeayynLGlayykqG 42 
                 a+ + nLG+++ ++G
  KIR64234.1 590 ADTLVNLGAVLIELG 604
                 566667777776665 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.79
      TPR_11  27 naeayynLGlayykqG 42 
                  a+a +nLGl+ ++ G
  KIR64234.1 674 AARANHNLGLVAFRAG 689
                 5899******988765 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.068        88       5      28 ..     476     500 ..     472     510 .. 0.79
   2 ?    3.4   0.1     0.075        96      10      26 ..     521     537 ..     512     547 .. 0.75
   3 ?    4.0   0.2     0.046        59       4      28 ..     555     580 ..     554     586 .. 0.88
   4 ?    5.3   0.0     0.018        23       1      28 [.     592     617 ..     592     631 .. 0.89
   5 ?   -0.7   0.0       1.5   1.9e+03       3      26 ..     679     702 ..     679     709 .. 0.84
   6 ?   -0.8   0.1       1.6     2e+03      12      24 ..     735     747 ..     724     758 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.068
       TPR_7   5 LarlysrlGdyeeAielyeqsL.al 28 
                  +++ + + d++eA e+y  +L a+
  KIR64234.1 476 AGVAAFGRADWQEAREHYLVALaAF 500
                 566777789*********9988555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.075
       TPR_7  10 srlGdyeeAielyeqsL 26 
                   lGd eeA++ y+ +L
  KIR64234.1 521 YFLGDLEEAADRYRTAL 537
                 5589999**99999955 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.046
       TPR_7   4 nLarlysrlGdyeeAielyeqsL.al 28 
                 nL+++ +++G+ + A+e y+++  al
  KIR64234.1 555 NLGNVSFQRGELDVAAEQYRAAAeAL 580
                 9*******************977555 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.018
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLal 28 
                 +L+nL+ +  +lG+   A+e++ q  a 
  KIR64234.1 592 TLVNLGAVLIELGRPHLALEHLDQ--AG 617
                 799*******************99..65 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.5
       TPR_7   3 lnLarlysrlGdyeeAielyeqsL 26 
                 +nL+ + +r Gd  eA   y  +L
  KIR64234.1 679 HNLGLVAFRAGDLPEAQLRYGLAL 702
                 69**********999987777755 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 1.6
       TPR_7  12 lGdyeeAielyeq 24 
                 + ++++A e+y++
  KIR64234.1 735 RSNFRQAQEHYRR 747
                 5789999999998 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.8       7.3   9.4e+03      22      63 ..      68     105 ..      63     110 .. 0.57
   2 ?    4.4   3.6     0.048        62      29      63 ..     465     499 ..     463     502 .. 0.86
   3 ?    3.9   8.9     0.067        86       1      64 [.     474     540 ..     474     543 .. 0.87
   4 ?    9.2   5.9    0.0015         2       4      63 ..     517     579 ..     514     580 .. 0.83
   5 ?    6.4   4.7     0.011        14       3      58 ..     563     614 ..     555     628 .. 0.59
   6 ?    4.2   2.2     0.053        68       7      66 ..     600     666 ..     594     668 .. 0.71
   7 ?    7.2   6.7    0.0061       7.8       4      53 ..     641     694 ..     639     705 .. 0.86
   8 ?   13.4   0.6   7.3e-05     0.093      32      64 ..     713     745 ..     695     748 .. 0.83
   9 ?    0.7   0.2       0.7   8.9e+02      11      47 ..     736     761 ..     734     764 .. 0.46

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 7.3
      TPR_16  22 aalkrdpssPdaaeAllllgdaal.rqgrlaeAaalyraalra 63 
                 + +++    P++ +A+++++ a   +++r + A+  ++aa+r 
  KIR64234.1  68 RIRDAV---PRDDDASMASAIASRiELSREKVAL--FNAAARR 105
                 555666...6777777777766554445544444..5555544 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.048
      TPR_16  29 ssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 ++ + a ++l+ g+aa+ + +++eA++ y+ al+a
  KIR64234.1 465 DPAEVAKSSLAAGVAAFGRADWQEAREHYLVALAA 499
                 55668899999******************999976 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.067
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPd......aaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 la++ aa+ + d+++A++ +  al+++    +       a+A  + g+ a+ +g+l+eAa+ yr al+ +
  KIR64234.1 474 LAAGVAAFGRADWQEAREHYLVALAAFT---AcgdpkgVADATTNVGNTAYFLGDLEEAADRYRTALPLY 540
                 688999**************99999994...3344667***********************999999877 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0015
      TPR_16   4 araalragdyddAaaaleaalkrdpssPd.aaeAll..llgdaalrqgrlaeAaalyraalra 63 
                 ++ a+ +gd ++Aa ++++al ++++  + +  A    +lg++ +++g+l+ Aa++yraa++a
  KIR64234.1 517 GNTAYFLGDLEEAADRYRTALPLYRDLGLdRQTAVVgqNLGNVSFQRGELDVAAEQYRAAAEA 579
                 889999***************9997766654445544469*******************9875 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.011
      TPR_16   3 laraalragdyddAaaal.eaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyr 58 
                 ++ + ++a +y++Aa+al +   +r+     aa+ l +lg ++ ++gr  +A++ ++
  KIR64234.1 563 RGELDVAAEQYRAAAEALlRGGFRRH-----AADTLVNLGAVLIELGRPHLALEHLD 614
                 23333444444444444444444444.....77777777777777777777776665 PP

  == domain 6  score: 4.2 bits;  conditional E-value: 0.053
      TPR_16   7 alragdyddAaaaleaalkrdpssPd.......aaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 ++++g++  A++ l++a ++++++ d        ae   + g+a++  + +++A+a +++alr++  
  KIR64234.1 600 LIELGRPHLALEHLDQAGALYRETCDeselggkLAELDQNTGLALAGVKSFERARAHLLSALRHWQA 666
                 55556666666666666555544444555566699999999********************999865 PP

  == domain 7  score: 7.2 bits;  conditional E-value: 0.0061
      TPR_16   4 araalragdyddAaaaleaalkrdpssPd.......aaeAllllgdaalrqgrlaeA 53 
                 ++a++  + +++A+a l  al+ +    +       aa+A  +lg++a+r+g+l+eA
  KIR64234.1 641 GLALAGVKSFERARAHLLSALRHW---QAgepsaerAARANHNLGLVAFRAGDLPEA 694
                 678888899999999999999988...666666888********************9 PP

  == domain 8  score: 13.4 bits;  conditional E-value: 7.3e-05
      TPR_16  32 daaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 +aa+A+l+lg +a ++g++ +A+  +r a++++
  KIR64234.1 713 EAADARLGLGTVARHRGDVSGARSNFRQAQEHY 745
                 79*********************9999998876 PP

  == domain 9  score: 0.7 bits;  conditional E-value: 0.7
      TPR_16  11 gdyddAaaaleaalkrdpssPdaaeAllllgdaalrq 47 
                  ++++A++ + + + +          +l++++aa+  
  KIR64234.1 736 SNFRQAQEHY-RRTGQ----------WLAYAQAAFNE 761
                 4556666666.44444..........44444444443 PP

>> SHNi-TPR  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       5.3   6.8e+03      19      32 ..     528     541 ..     527     543 .. 0.78
   2 ?    1.0   0.1      0.23   2.9e+02       8      22 ..     564     578 ..     564     580 .. 0.93
   3 ?    7.7   0.0    0.0018       2.4       8      26 ..     729     747 ..     729     748 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.3
    SHNi-TPR  19 qAveDlrkaLeLre 32 
                 +A+  +r+aL L++
  KIR64234.1 528 EAADRYRTALPLYR 541
                 67777999*99987 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.23
    SHNi-TPR   8 GEislEnenFpqAve 22 
                 GE+++ +e++  A+e
  KIR64234.1 564 GELDVAAEQYRAAAE 578
                 9************97 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0018
    SHNi-TPR   8 GEislEnenFpqAveDlrk 26 
                 G++s  ++nF qA+e +r+
  KIR64234.1 729 GDVSGARSNFRQAQEHYRR 747
                 89*************9996 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.9       9.8   1.2e+04       6      23 ..     475     492 ..     473     493 .. 0.77
   2 ?    4.9   0.0      0.04        51       9      25 ..     518     534 ..     511     535 .. 0.84
   3 ?   -0.8   0.1       2.8   3.6e+03       6      25 ..     555     574 ..     555     575 .. 0.83
   4 ?   -2.4   1.2       8.9   1.1e+04      17      25 ..     574     582 ..     569     582 .. 0.75
   5 ?   11.7   0.2   0.00026      0.33       3      26 .]     592     615 ..     590     615 .. 0.93
   6 ?   -0.0   1.1       1.6     2e+03       1      17 [.     653     669 ..     653     671 .. 0.90
   7 ?    8.7   0.5    0.0023         3       2      21 ..     676     695 ..     675     695 .. 0.90
   8 ?    4.9   0.4     0.039        50       3      21 ..     717     735 ..     715     740 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 9.8
       TPR_4   6 aLArallalGdldeAral 23 
                 a + a++ + d+ eAr++
  KIR64234.1 475 AAGVAAFGRADWQEAREH 492
                 567777777799999987 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.04
       TPR_4   9 rallalGdldeAralle 25 
                  +++ lGdl+eA++  +
  KIR64234.1 518 NTAYFLGDLEEAADRYR 534
                 57889*******99876 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 2.8
       TPR_4   6 aLArallalGdldeAralle 25 
                 +L+ + +++G+ld A++  +
  KIR64234.1 555 NLGNVSFQRGELDVAAEQYR 574
                 6888999*****99988776 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 8.9
       TPR_4  17 ldeAralle 25 
                  ++A+all+
  KIR64234.1 574 RAAAEALLR 582
                 578888887 PP

  == domain 5  score: 11.7 bits;  conditional E-value: 0.00026
       TPR_4   3 allaLArallalGdldeAraller 26 
                 +l++L+ +l +lG++  A+++l++
  KIR64234.1 592 TLVNLGAVLIELGRPHLALEHLDQ 615
                 689*******************97 PP

  == domain 6  score: -0.0 bits;  conditional E-value: 1.6
       TPR_4   1 arallaLArallalGdl 17 
                 ara+l+ A  ++++G++
  KIR64234.1 653 ARAHLLSALRHWQAGEP 669
                 6999999********97 PP

  == domain 7  score: 8.7 bits;  conditional E-value: 0.0023
       TPR_4   2 rallaLArallalGdldeAr 21 
                 ra ++L+ +++++Gdl+eA+
  KIR64234.1 676 RANHNLGLVAFRAGDLPEAQ 695
                 6779***************6 PP

  == domain 8  score: 4.9 bits;  conditional E-value: 0.039
       TPR_4   3 allaLArallalGdldeAr 21 
                 a+l+L+ ++ ++Gd   Ar
  KIR64234.1 717 ARLGLGTVARHRGDVSGAR 735
                 99************98888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (939 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 6501.20
//
Query:       KIR64235.1  [L=134]
Description: hypothetical protein TK50_00435 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1069.38
//
Query:       KIR64236.1  [L=416]
Description: serine protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-27   96.9  11.4    2.4e-27   96.0  11.4    1.3  1  Peptidase_S8   Subtilase family
    1.8e-05   25.3   0.0    4.5e-05   24.0   0.0    1.7  1  Inhibitor_I9   Peptidase inhibitor I9
  ------ inclusion threshold ------
       0.13   13.0   0.1        2.4    9.0   0.1    2.3  1  S8_pro-domain  Peptidase S8 pro-domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0  11.4   4.1e-31   2.4e-27       8     284 ..     172     397 ..     159     408 .. 0.80

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 4.1e-31
                   EECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-SSTTSB-H CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   8 vlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvldtsggsm 104
                   ++D+G++ sh d+  +               a ++++  + t + +++++      HGth AG+++++        g a ++ + +vkv+d  + s 
    KIR64236.1 172 IVDSGIQISHADFGGQ---------------AVYGYDAVDGTLPANDCSG------HGTHAAGTVGGT------TFGAAKNVVLVAVKVFDCALPS- 240
                   6777777777776611...............1134444444445555555......************......889999999*******877754. PP

                   H..HHHHHHHHHHHHCT-S....EEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEEESTTS CS
                   xxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 105 etgteliraieeaaedkvd....vinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvgaytteg 197
                    t + li++i++ + +++     v n+  g     p++  + +  a+ +av   g+ v + aGN++       + ++v +p++   ++tvga+  ++
    KIR64236.1 241 -TLSMLINGINWMIANHPAgqpaVANV--G-VLTSPTVALD-A--AVTNAV-ADGITVTVPAGNSN------VSACTV-SPASVPTALTVGATLMND 322
                   .459***********998888766665..4.4455555544.3..899999.88************......777877.5777999*********** PP

                   SB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS-EE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 198 kiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAqdl 284
                   + a++S+ Gp+       di apG  i s w   +      + +q++sGTS+A+P++ag+aA +ls +p +tp++v ++l   A+++
    KIR64236.1 323 NRASWSNFGPCL------DIFAPGDRITSAWWSST------TATQTISGTSHAAPLVAGVAARVLSNNPTWTPAQVASYLFGVASPV 397
                   ***********9......6*******777776666......3389*******************************99998777665 PP

>> Inhibitor_I9  Peptidase inhibitor I9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   7.6e-09   4.5e-05      37      80 ..      91     134 ..      65     136 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 7.6e-09
                   --EEEEEEESSSSSEEEEEE-GGGHHHHHTSTTEEEEEEEEEEE CS
  Inhibitor_I9  37 akagilysYkilfnGfavklteeqaeklrkrpeVesVepDqsvr 80 
                      +  +  + ++nGf+v+ +e++a +l+++p V++Ve+D+  +
    KIR64236.1  91 YGFRPDQVWRDALNGFSVRTSEQVARRLAADPAVAAVEQDRLTS 134
                   456667777889****************************8765 PP

>> S8_pro-domain  Peptidase S8 pro-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1    0.0004       2.4       2      73 ..      66     132 ..      65     134 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0004
  S8_pro-domain   2 WaVrlkegg.....eee.AdrvAkkhgfenlgqigeleghYlfrhsepkkrskrslrhkreerLakdpkVkwaeqqev 73 
                    ++V lke+g     +++ A r+A+++gf+  +   +  + + +r           +++   +rLa+dp V  +eq ++
     KIR64236.1  66 YVVTLKESGgsvddRHVgAARLADRYGFRPDQVWRDALNGFSVRT----------SEQV-ARRLAADPAVAAVEQDRL 132
                    677777755565433337888888888876555555445555555..........2222.458888999988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3287.33
//
Query:       KIR64237.1  [L=532]
Description: glycosyl hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-66  222.8   6.6    7.6e-66  222.4   6.6    1.1  1  Cellulase  Cellulase (glycosyl hydrolase family 5)
    2.6e-26   91.9  11.8    2.6e-26   91.9  11.8    2.5  2  CBM_2      Cellulose binding domain


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.4   6.6   8.5e-70   7.6e-66       6     280 ..      61     373 ..      56     374 .. 0.89

  Alignments for each domain:
  == domain 1  score: 222.4 bits;  conditional E-value: 8.5e-70
                 EEEEGEEECETTSCGGSHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS......TTTCSSSSTTTTH CS
   Cellulase   6 kpvnlkglstswgnpyttkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHse......egwltkadgnsse 98 
                 ++vn    +t wgnp  t+a+id vk+agf+t+R+pvs+ + +++ap+y++++++l+r++e+v+ya+ +glyv++++H +      ++wl  +  +s++
  KIR64237.1  61 ANVNGIPSETAWGNPVVTQAFIDRVKAAGFKTIRIPVSYLGNIGSAPNYTINAAWLNRIQEIVDYAYGRGLYVLINMHGDgyktvtGSWLICD--SSNQ 157
                 45555667788****************************99999***************************************9999996555..8999 PP

                 HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCTCCT.CHHHTTHHHHHHHHHHHHHHHHTTS...SEEEEECHHHHTBHHHHHCT....SGSS CS
   Cellulase  99 dtaeeffkklwtqiAerykkndevvifelmNEPhgnntgaew.tseeadevkayaeeaikaIRavgpn...rliivegnswsgnldgavln....dPnd 189
                 +t++++++k+w+q+A+r+++++e++i e mNE ++++ g    t+  + +++ay++ +++++R +g+n   r+++v+g  w++n+d +v n     P+d
  KIR64237.1 158 TTIRDKYQKVWQQVATRFQSYSERLILESMNEEFDGQYG--NpTQPCYSNINAYNQIFVDTVRRTGGNntsRWLLVPG--WNTNIDYTVGNygfvLPTD 252
                 999********************************7665..4567889********************9*********..***********99996633 PP

                 .........SSTTEEEEEEEETTTHHHTGCGS...............HSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTSSH......HHHHHH CS
   Cellulase 190 .........sqdnliysvHfYgpsdfaqtefg...............kdltdktnlaqrledaakylvekgipviigEfGgsnadgd......lakeea 258
                          ++++l++svH+Y+p+dfa++e+g               +++++++ ++++l+++ +++v++g+pv++gE+G  ++++        + +  
  KIR64237.1 253 qyrsssipaNEQRLMISVHYYDPWDFAGEENGtitqwgpaatnparkSTWGQQDFMDGQLKKVRDTFVSRGYPVFVGEYGSVDKTSAdstnnrYRAD-- 349
                 34444445569***********************************************************************888866633334444.. PP

                 HHH....HHHHHHTTTEEEEEEESSS CS
   Cellulase 259 ekw....ldylkekgiswiyWslnpk 280
                   +    ++++k++g+  +yW+++++
  KIR64237.1 350 --YartlVSTAKKYGAATAYWDNGYN 373
                 ..355569***************987 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.33     3e+03       7      30 ..     364     389 ..     358     393 .. 0.67
   2 !   91.9  11.8   2.9e-30   2.6e-26       1      92 [.     436     526 ..     436     531 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.33
                 EEEE-SSEEEEE..EEEEE-SSS-EE CS
       CBM_2   7 vtseWetGftas..vtvkNsgssain 30 
                  t  W++G++++  + + N +s++++
  KIR64237.1 364 ATAYWDNGYNGAygFGLFNRSSATVT 389
                 56789999987622456677766665 PP

  == domain 2  score: 91.9 bits;  conditional E-value: 2.9e-30
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsapt 92 
                 ++a+y++t eW++Gf+a+v+v+  gssai+gWtv+wt+ +gq+v q+W+at+++sG++vta+nvs+Ng++ +Ggs++fGf gs +g+n  p+
  KIR64237.1 436 CSASYTLTGEWQGGFQAEVRVT-AGSSAISGWTVTWTFANGQQVSQAWSATLTTSGSTVTARNVSYNGSLSAGGSTTFGFLGSSSGTNGVPS 526
                 889******************9.588999*********************************************************997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 4081.70
//
Query:       KIR64238.1  [L=229]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-30  104.8   0.0    4.1e-30  104.2   0.0    1.3  1  Response_reg  Response regulator receiver domain
    1.4e-21   76.3   0.0    6.3e-21   74.2   0.0    2.0  2  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.0   4.6e-34   4.1e-30       1     111 [.       5     113 ..       5     114 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 4.6e-34
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vl+++Ddp+++ellr++le+eg  +v ++ dg++al+ +++  +dl++lD++mp++dGl++++ +r+++ e+pv+++ta+s+e+d+  +l++gadd+
    KIR64238.1   5 VLVAEDDPKQAELLRRYLEHEGH-RVSVVHDGRAALDEIRHCPPDLLVLDVMMPRVDGLDVCRILRRDS-EVPVLMVTARSTEDDLLLGLDLGADDY 99 
                   89*********************.******************************************977.*************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   l+Kp++p+eL +++
    KIR64238.1 100 LTKPYSPRELAARV 113
                   **********9998 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.31   2.8e+03       8      26 ..      12      30 ..      11      32 .. 0.74
   2 !   74.2   0.0     7e-25   6.3e-21       2      77 .]     151     226 ..     150     226 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHHTTTSEEE CS
  Trans_reg_C  8 pkefklLelLlenpgrvvs 26
                 pk+ +lL+  le++g+ vs
   KIR64238.1 12 PKQAELLRRYLEHEGHRVS 30
                 6788888888888877665 PP

  == domain 2  score: 74.2 bits;  conditional E-value: 7e-25
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                   +v  tp ef+lL +++++pgrv+sr+ Ll+++ g d++++ rtvdvh+ +LR+k+e++++ p ++ tv+g+GY+l
   KIR64238.1 151 APVVCTPGEFALLSAFAAEPGRVFSRDLLLRRLHGLDSYITCRTVDVHVMNLRRKIEANPRRPVRLLTVYGIGYKL 226
                  68899*********************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1731.17
//
Query:       KIR64239.1  [L=626]
Description: hypothetical protein TK50_00465 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.9e-26   90.8   0.0    1.5e-25   89.9   0.0    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
      2e-13   50.5   1.4      2e-13   50.5   1.4    2.2  2  HAMP         HAMP domain
    4.1e-10   39.6   0.1    1.5e-09   37.8   0.1    2.1  1  HisKA        His Kinase A (phospho-acceptor) domain
    2.1e-05   24.5   0.1    6.9e-05   22.8   0.1    2.0  2  HATPase_c_2  Histidine kinase-like ATPase domain
     0.0093   15.8   0.0      0.015   15.1   0.0    1.3  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.26   11.2   0.0    1.6  1  HATPase_c_5  GHKL domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.0   4.9e-29   1.5e-25       2     110 ..     499     608 ..     498     610 .. 0.91

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 4.9e-29
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE..TEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEE CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikase..ddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvese 97 
                 d++rLrq+i nl++Na+++++ +g+++++ +     ++ +i v D+G+Gip+e++ ++fe+f + ++s++r+ gg+GlGl+iv+k++e +gG+ +v+ +
  KIR64239.1 499 DPIRLRQAIGNLITNAIRHTPANGRVTISSR--TggVHAEIVVADTGPGIPEEQRGLVFERFWRaEKSRNRQMGGSGLGLAIVRKIAESHGGTAEVSGT 595
                 899****************666666666655..3469***************************99999999************************999 PP

                 TTTEEEEEEEEES CS
   HATPase_c  98 pgrGttftftlpl 110
                  g G  ft++lp 
  KIR64239.1 596 AGAGAVFTLRLPN 608
                 9*********996 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       4.1   1.2e+04      43      52 ..     148     157 ..     147     158 .. 0.58
   2 !   50.5   1.4   6.8e-17     2e-13       5      50 ..     338     383 ..     334     383 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.1
                 HHHHHHHHHH CS
        HAMP  43 afNaMldrLr 52 
                 a++ M++r r
  KIR64239.1 148 ALRKMAERAR 157
                 5666666655 PP

  == domain 2  score: 50.5 bits;  conditional E-value: 6.8e-17
                 TTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHH CS
        HAMP   5 rilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldr 50 
                 r++rPL+ L++aa r+++Gd  +r+ vsgrDEi++L+ afN+M+++
  KIR64239.1 338 RLVRPLHALTAAAGRMRNGDTAARVRVSGRDEIARLGNAFNEMAEQ 383
                 79*****************************************985 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.1     5e-13   1.5e-09       2      67 .]     391     454 ..     390     454 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 5e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 +++++ ++aHE+rtP++ i+g +ea ++     e    ++ ++ +ea  l+h++edl dl+  +ag
  KIR64239.1 391 RRDMVGDIAHEMRTPVTNIRGWLEAAEDG--VVELDVGLVSSLLDEALLLQHVIEDLQDLAAADAG 454
                 689*************************5..3356666***********************99986 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.4     1e+04      23      39 ..     262     278 ..     258     278 .. 0.84
   2 !   22.8   0.1   2.3e-08   6.9e-05      30     112 ..     491     586 ..     464     606 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.4
  HATPase_c_2  23 glseelldeirlaveEa 39 
                   +++e++d+++ +v+Ea
   KIR64239.1 262 PITAEQRDDVNGCVSEA 278
                  57899999999999998 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 2.3e-08
  HATPase_c_2  30 d..........eirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep........keslkegGrGlalikglv 109
                  +          ++r a++ ++tNa++h   +   g+v+++ + ++   +++vaD Gpg + e++  + + e         + +   +G+Gla++++++
   KIR64239.1 491 AtpgtlsadpiRLRQAIGNLITNAIRHTPAN---GRVTISSRTGGVHAEIVVADTGPGIPEEQR--GLVFERfwraeksrNRQMGGSGLGLAIVRKIA 583
                  233333344449999************9984...88****9899999***********877754..333344677777778899999*********99 PP

  HATPase_c_2 110 Dev 112
                  ++ 
   KIR64239.1 584 ESH 586
                  876 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.1e-06     0.015       3      81 ..     503     578 ..     501     586 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.1e-06
  HATPase_c_3   3 lekAlaelvdNsldAdaen..vkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakrkstslGkkGiGlklAs 81 
                  l++A+  l+ N++     n  v+i+  +  g ++eiv+ D G G++ee+   ++ r+ + +k+    ++++G  G+G  lA+
   KIR64239.1 503 LRQAIGNLITNAIRHTPANgrVTISSRTG-GVHAEIVVADTGPGIPEEQRGLVFeRFWRAEKS---RNRQMGGSGLG--LAI 578
                  5789999******9666662366666665.678***************866666345555555...68999999999..554 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.8e-05      0.26       6      88 ..     503     593 ..     498     606 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.8e-05
  HATPase_c_5   6 lcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg...ek.........kklesskskkeehGiGlksireivkkykgnlsie 88 
                  l   +gnl+ NAi    +    +  ++++ r+   +  i +  +  g   e+         +  +s++++ +  G+Gl  +r+i+++++g+++++
   KIR64239.1 503 LRQAIGNLITNAIRHTPA----NGRVTISSRTGGVHAEIVVADTGPGipeEQrglvferfwRAEKSRNRQMGGSGLGLAIVRKIAESHGGTAEVS 593
                  556789999998865544....5578888888888888888888655554333334433434444677888899****************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 4669.58
//
Query:       KIR64240.1  [L=826]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-27   96.0  31.8    3.9e-14   52.7   5.4    4.4  3  TPR_12      Tetratricopeptide repeat
      1e-24   85.3   9.7    4.1e-06   26.4   0.1    5.5  5  TPR_1       Tetratricopeptide repeat
    1.5e-22   77.8  18.8    3.1e-05   23.7   1.5    6.0  5  TPR_2       Tetratricopeptide repeat
    3.8e-15   54.7  20.4      1e-05   25.2   0.1    5.5  4  TPR_7       Tetratricopeptide repeat
    1.1e-14   53.3   3.4     0.0046   17.1   0.0    5.0  4  TPR_8       Tetratricopeptide repeat
    2.2e-11   43.2  27.0      6e-05   22.8   0.4    6.3  5  TPR_10      Tetratricopeptide repeat
    1.2e-08   34.5   0.0    2.6e-08   33.4   0.0    1.6  1  NB-ARC      NB-ARC domain
    2.7e-07   31.1   2.3    5.9e-07   30.0   0.2    2.7  2  AAA_16      AAA ATPase domain
    5.9e-07   29.8   0.0    8.4e-05   22.9   0.0    2.6  2  AAA_22      AAA domain
    1.5e-06   28.6  37.1        0.3   12.0   1.1    8.1  6  TPR_14      Tetratricopeptide repeat
    1.4e-05   24.7   0.7    0.00014   21.4   0.0    2.1  2  SNAP        Soluble NSF attachment protein, SNAP
     0.0001   22.9   3.0     0.0001   22.9   3.0    6.4  6  TPR_16      Tetratricopeptide repeat
    0.00038   20.4   0.0      0.001   19.0   0.0    1.8  1  NACHT       NACHT domain
    0.00094   19.6  18.0     0.0022   18.4   6.0    8.1  5  TPR_4       Tetratricopeptide repeat
     0.0017   18.6   9.8        1.6    9.3   0.3    5.0  5  TPR_17      Tetratricopeptide repeat
     0.0033   17.1  10.4      0.062   13.0   1.7    4.6  6  TPR_11      TPR repeat
     0.0046   17.5  14.8        1.6    9.5   0.6    7.2  6  TPR_6       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.015   14.9   0.1      0.077   12.6   0.1    2.2  1  AAA_25      AAA domain
      0.026   14.4   1.4       0.16   11.9   0.6    3.0  2  MarR_2      MarR family
      0.046   13.8   6.5        2.4    8.3   0.3    3.7  4  MIT         MIT (microtubule interacting and transport) domai
      0.083   13.4   7.1       0.49   10.9   2.7    3.7  3  TPR_19      Tetratricopeptide repeat
       0.11   12.6   3.1        6.4    6.8   0.1    2.8  2  DUF3856     Domain of Unknown Function (DUF3856)
       0.28   10.6   1.2        5.1    6.5   0.2    2.4  2  DUF5112     Domain of unknown function (DUF5112)
          2    8.2   5.2         23    4.7   0.0    3.0  3  DUF5113     Domain of unknown function (DUF5113)
          2    8.6   7.3         12    6.0   0.1    4.2  3  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   3.1   1.9e-07   0.00013      29      75 ..     599     643 ..     581     644 .. 0.91
   2 !   52.7   5.4   5.5e-17   3.9e-14       3      72 ..     653     720 ..     651     725 .. 0.94
   3 !   32.9   5.9   8.3e-11     6e-08       3      76 ..     733     804 ..     731     804 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.9e-07
      TPR_12  29 aleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 al +a+r+   d+++ a++ rn + ++++lg++ +A+ +l+++l+++
  KIR64240.1 599 ALLAASRV--ADRDGQARAHRNRAVACLRLGDHHQARVHLRRSLRLY 643
                 88899999..99999******************************98 PP

  == domain 2  score: 52.7 bits;  conditional E-value: 5.5e-17
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 a+a+ nl+ +  rlgry++Al++ ++al++++++ +p+    a++l+n+g+++++lg++++A+++ ++al
  KIR64240.1 653 ARAHLNLGILAERLGRYEQALQHAQQALDLFTAAENPNG--RANALNNIGWYHSQLGNHRQAIDYCTQAL 720
                 77888********************************98..************************99998 PP

  == domain 3  score: 32.9 bits;  conditional E-value: 8.3e-11
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 a ++  l+ +++rl++ +eA+++++ al+++r++   +++++attl  Lg+ +ra+g +  A+++ ++al+i+e
  KIR64240.1 733 AHTWDSLGYAHHRLEQQAEAIRCYRNALALWREA--AERYYEATTLTHLGDSHRAAGAPGPARRAWRRALKILE 804
                 667767****************************..88999*****************************9986 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   5.4e-06    0.0039       1      30 [.     613     642 ..     613     644 .. 0.96
   2 !   25.4   0.8   1.2e-08   8.4e-06       1      30 [.     653     682 ..     653     683 .. 0.97
   3 !   26.4   0.1   5.7e-09   4.1e-06       1      31 [.     693     723 ..     693     725 .. 0.94
   4 !   15.2   0.2     2e-05     0.014       7      30 ..     739     762 ..     738     765 .. 0.94
   5 ?    2.6   0.0      0.19   1.4e+02       2      30 ..     774     802 ..     773     804 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 5.4e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALel 30 
                 a+a+ n+++a+++lg++ +A  + ++ L+l
  KIR64240.1 613 ARAHRNRAVACLRLGDHHQARVHLRRSLRL 642
                 79**************************98 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 1.2e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALel 30 
                 a+a+ nlG +  +lg+y++Al++ ++AL l
  KIR64240.1 653 ARAHLNLGILAERLGRYEQALQHAQQALDL 682
                 89**************************97 PP

  == domain 3  score: 26.4 bits;  conditional E-value: 5.7e-09
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALeln 31 
                 a+al+n+G  + +lg++ +A++y+ +AL l+
  KIR64240.1 693 ANALNNIGWYHSQLGNHRQAIDYCTQALVLQ 723
                 79**************************886 PP

  == domain 4  score: 15.2 bits;  conditional E-value: 2e-05
                 HHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekALel 30 
                 lG+a+++l++  eA+ +y+ AL l
  KIR64240.1 739 LGYAHHRLEQQAEAIRCYRNALAL 762
                 9*********************98 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALel 30 
                  +l  lG  ++  g +  A  + ++AL++
  KIR64240.1 774 TTLTHLGDSHRAAGAPGPARRAWRRALKI 802
                 57899**********************98 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.3     3e-06    0.0021       1      31 [.     613     643 ..     613     645 .. 0.96
   2 !   23.7   1.5   4.3e-08   3.1e-05       1      30 [.     653     682 ..     653     685 .. 0.95
   3 !   19.2   0.1   1.2e-06   0.00087       1      31 [.     693     723 ..     693     725 .. 0.93
   4 !   17.5   1.0   4.5e-06    0.0032       3      30 ..     735     762 ..     733     762 .. 0.93
   5 !    7.4   0.0    0.0074       5.3       3      30 ..     775     802 ..     773     804 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 a+a+ n++ a+++lgd+ +A+ +++++l+l+
  KIR64240.1 613 ARAHRNRAVACLRLGDHHQARVHLRRSLRLY 643
                 789**************************97 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 4.3e-08
       TPR_2   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 a+a+ nlG ++++lg+ye+Al++ ++Al l
  KIR64240.1 653 ARAHLNLGILAERLGRYEQALQHAQQALDL 682
                 789*************************98 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 1.2e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 a al+n+G+ + +lg++ +A++++ +Al l 
  KIR64240.1 693 ANALNNIGWYHSQLGNHRQAIDYCTQALVLQ 723
                 689*************************886 PP

  == domain 4  score: 17.5 bits;  conditional E-value: 4.5e-06
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                  +  lG+a+ +l + +eA+++++ Al+l
  KIR64240.1 735 TWDSLGYAHHRLEQQAEAIRCYRNALAL 762
                 6899**********************97 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.0074
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                  l  lG++++++g +  A++a+++Al++
  KIR64240.1 775 TLTHLGDSHRAAGAPGPARRAWRRALKI 802
                 57789*********************97 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.3    0.0041         3       3      29 ..     617     643 ..     615     650 .. 0.85
   2 !   16.2   0.4   1.1e-05    0.0077       1      28 [.     655     682 ..     655     692 .. 0.84
   3 !   25.2   0.1   1.4e-08     1e-05       1      33 [.     695     727 ..     695     730 .. 0.89
   4 !   14.5   3.2   3.7e-05     0.027       1      32 [.     735     766 ..     735     777 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0041
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLalt 29 
                  n a+++ rlGd+ +A  ++++sL+l 
  KIR64240.1 617 RNRAVACLRLGDHHQARVHLRRSLRLY 643
                 588*******************99875 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.1e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLal 28 
                 a+lnL+ l +rlG+ye+A+++ +q+L l
  KIR64240.1 655 AHLNLGILAERLGRYEQALQHAQQALDL 682
                 689*********************7744 PP

  == domain 3  score: 25.2 bits;  conditional E-value: 1.4e-08
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdpe 33 
                 aL+n++  +s+lG++++Ai++++q+L+l ++ +
  KIR64240.1 695 ALNNIGWYHSQLGNHRQAIDYCTQALVLQRQVG 727
                 89**********************998877665 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 3.7e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 +++ L+ +++rl + +eAi++y+ +Lal+++ 
  KIR64240.1 735 TWDSLGYAHHRLEQQAEAIRCYRNALALWREA 766
                 6789***********************99875 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.024        17       6      31 ..     618     643 ..     613     645 .. 0.86
   2 !   14.3   0.2   5.1e-05     0.036       1      30 [.     653     682 ..     653     683 .. 0.96
   3 !   17.1   0.0   6.4e-06    0.0046       1      28 [.     693     720 ..     693     725 .. 0.91
   4 !   12.9   0.1   0.00014       0.1       1      29 [.     733     761 ..     733     762 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.024
                 HHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleld 31 
                 n + ++l lgd+++A   +++ l+l 
  KIR64240.1 618 NRAVACLRLGDHHQARVHLRRSLRLY 643
                 789999***************99985 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 5.1e-05
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekalel 30 
                 a+a++nlg + + lg+ye+A +  ++al+l
  KIR64240.1 653 ARAHLNLGILAERLGRYEQALQHAQQALDL 682
                 799************************987 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 6.4e-06
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekal 28 
                 a a++n+g+ +++lg++ +A+ y+ +al
  KIR64240.1 693 ANALNNIGWYHSQLGNHRQAIDYCTQAL 720
                 6799***********************8 PP

  == domain 4  score: 12.9 bits;  conditional E-value: 0.00014
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekale 29 
                 a+ +  lg++++ l++  eA+ +y+ al 
  KIR64240.1 733 AHTWDSLGYAHHRLEQQAEAIRCYRNALA 761
                 578999*******************9996 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.9     0.031        22       7      32 ..     618     643 ..     613     646 .. 0.91
   2 !   11.9   1.3   0.00022      0.16       7      31 ..     658     682 ..     653     690 .. 0.90
   3 !   22.8   0.4   8.4e-08     6e-05       2      35 ..     693     726 ..     692     735 .. 0.93
   4 !    9.8   2.9     0.001      0.73       7      35 ..     738     766 ..     733     769 .. 0.93
   5 !    6.7   0.0    0.0092       6.6       2      37 ..     773     807 ..     773     812 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.031
      TPR_10   7 NLanalrqrgrydeAealleealair 32 
                 N a+a  ++g++++A+ +l+++l+++
  KIR64240.1 618 NRAVACLRLGDHHQARVHLRRSLRLY 643
                 77899999***************998 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00022
      TPR_10   7 NLanalrqrgrydeAealleealai 31 
                 NL+++  ++gry++A++++++al++
  KIR64240.1 658 NLGILAERLGRYEQALQHAQQALDL 682
                 9*********************986 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 8.4e-08
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrrl 35 
                 A++lnN++ +++q+g++ +A +++ +al ++r++
  KIR64240.1 693 ANALNNIGWYHSQLGNHRQAIDYCTQALVLQRQV 726
                 99*****************************998 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.001
      TPR_10   7 NLanalrqrgrydeAealleealairrrl 35 
                  L+ a++++ + +eA + ++ ala++r++
  KIR64240.1 738 SLGYAHHRLEQQAEAIRCYRNALALWREA 766
                 69*************************98 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.0092
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrrllG 37 
                 A++l++L+  +r+ g    A++  ++al i  +llG
  KIR64240.1 773 ATTLTHLGDSHRAAGAPGPARRAWRRALKI-LELLG 807
                 89***************************9.55555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   3.6e-11   2.6e-08      21     250 ..     191     414 ..     174     416 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 3.6e-11
                 EEEEEEESTTSSHHHHHHHHCCSHCCCCCCBT.EEEEE......EEESXXHHHHHHHXXHHHHHCCCTTSSSS-STTS.HHHHHHHHCCCTTEEEEEEE CS
      NB-ARC  21 lvvalvGmgGvGKttlakqilnksdevegrFd.svawv......vvsktdkseeiletilkeLslseddleekeeves.lkrklvrlLltkrfllvlDD 111
                  +  ++G +GvGKt la    ++   v  rF+ +  +v        +   +  e+l++ l+ L+      +  + +++ +    + +L ++r+l++lD 
  KIR64240.1 191 TICLISGTAGVGKTSLAVGWAHQ---VADRFPdGQLYVnlrgfdATGPAASPAEVLREFLEALGVPA---QRVPAGQDaRSGLYRSVLTGRRVLVLLDN 283
                 57789***********9888777...99999769999988888888888899999999999998774...4444444413555566788889******7 PP

                 E-SHHHH.....HHHHCHTTSEEEEEESBCCCCCCS-S-.EEEEEESS--HHHHHHHHHHCCTS-GGCHH..CHHHHHHHHHHCTT-HHHHHHHHHHHC CS
      NB-ARC 112 VweeedwdkigvvlparenrlrvllTTRdeevanavsat.sekievelLekdeawellenkvfekkleekesleevakeivekckGlPlalkvlgglls 209
                   +    d++   lp  +  + v++T+R + +a+ v  +   ++ +  L   ea ell+    + +le++   +e   +iv    GlPlal++++g  +
  KIR64240.1 284 AGDV---DQVRPLLP-GSPECLVVVTSRGH-LAGLVTIEgAVPLLLDPLPRREAHELLSRRLGADRLESE---PEATTRIVDAAAGLPLALAIVAGRAA 374
                 6655...88899999.999*********75.7899999999**************************966...899******************99877 PP

                 -TCSCCHHHHHHHHHH.CTGCCTS--SSSSSSSHHHHHHHHH CS
      NB-ARC 210 tkktveewkkvlekle.skllevekstskslesvasilqlsy 250
                  +  +  + +++++l+ s +l  + s+++    v+ + ++sy
  KIR64240.1 375 VQPALG-LGRLADELTgSDGLD-RFSHEDAATDVRTVFSWSY 414
                 654443.444444444144555.6666666667777777666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.2   8.2e-10   5.9e-07       2      55 ..     166     225 ..     165     292 .. 0.77
   2 ?   -2.4   0.1       7.3   5.3e+03      83     127 ..     488     504 ..     450     559 .. 0.47

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 8.2e-10
      AAA_16   2 lvGReeeleqLlsale.rvrsgrp.elvllsGesGvGKsslvrellralekd....ggif 55 
                 +vGR++ l +L ++l  r r++++  ++l+sG +GvGK+sl+  +++++ ++      ++
  KIR64240.1 166 FVGRRAALTALDALLAhRHRAPGTtTICLISGTAGVGKTSLAVGWAHQVADRfpdgQLYV 225
                 9**********99999888888889*****************888888888755422333 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 7.3
      AAA_16  83 rqlldeaesaeleawrekleealaavpelagaea..srllellkrll 127
                 ++                               +  ++ +++l rl+
  KIR64240.1 488 AEH------------------------------EpeQARRQALGRLI 504
                 111..............................11222222222222 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.2e-07   8.4e-05       4     102 ..     189     286 ..     184     301 .. 0.85
   2 ?    4.1   0.0     0.074        53      52     119 ..     470     551 ..     449     567 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.2e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst......sskdllrellralglelkaerlsseellealeqalraravielli 96 
                 t +i+++ G +G+GKT l+   ++q      a++ ++++++v+l +        s++++lre+l+alg+++ +     ++ ++ l++ + + ++ +l++
  KIR64240.1 189 TTTICLISGTAGVGKTSLAVGWAHQV-----ADRFPDGQLYVNLRGFDatgpaaSPAEVLREFLEALGVPAQR-VPAGQDARSGLYRSVLTGRR-VLVL 280
                 67899**************9999997.....4446888887777766666667********************.88999999999999999999.9*** PP

      AAA_22  97 iDEaqh 102
                 +D+a  
  KIR64240.1 281 LDNAGD 286
                 ***965 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.074
      AAA_22  52 sskdllrellralglelka....erlsseellealeqalraravielliiDEaqhlr..s...eealeeLrsllnl.....s 119
                  ++ +l++llra+  el a    e +++++l +++  +l++ ++  ll+ D  + ++  +    +a++ L +++       s
  KIR64240.1 470 PQRYVLHDLLRAYAAELVAehepEQARRQALGRLIDSYLHTGYAADLLLYDQRDPISpaParpGTAITALIDRAAAwrwftS 551
                 5667788999999999888777677788888888888888888889999998888854414457777777666555555554 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.5      0.73   5.3e+02       2      23 ..     477     498 ..     476     510 .. 0.86
   2 !    9.9   1.0    0.0021       1.5       2      31 ..     614     643 ..     613     649 .. 0.89
   3 !   12.0   1.1   0.00042       0.3       2      32 ..     654     684 ..     653     692 .. 0.89
   4 ?    7.0   0.0     0.018        13       7      30 ..     699     722 ..     693     732 .. 0.85
   5 !   11.3   1.9   0.00069      0.49       3      36 ..     735     768 ..     733     776 .. 0.86
   6 ?    7.1   0.5     0.016        11       6      35 ..     778     812 ..     773     818 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.73
      TPR_14   2 eallalaeallalGdpdeAial 23 
                 ++l+a+a+ l a  +p++A++ 
  KIR64240.1 477 DLLRAYAAELVAEHEPEQARRQ 498
                 578999*************995 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0021
      TPR_14   2 eallalaeallalGdpdeAiallrralala 31 
                 +a++ +a a+l+lGd+ +A+ +lrr l+l+
  KIR64240.1 614 RAHRNRAVACLRLGDHHQARVHLRRSLRLY 643
                 67888999*******************986 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00042
      TPR_14   2 eallalaeallalGdpdeAiallrralalaP 32 
                 +a+l l+ + ++lG++++A++++++al+l+ 
  KIR64240.1 654 RAHLNLGILAERLGRYEQALQHAQQALDLFT 684
                 78999**********************9875 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.018
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 +++++ +lG++++Ai+++ +al l
  KIR64240.1 699 IGWYHSQLGNHRQAIDYCTQALVL 722
                 68899***************9975 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 0.00069
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddae 36 
                  +  l+ a+ +l++ +eAi+++r alal+ + ae
  KIR64240.1 735 TWDSLGYAHHRLEQQAEAIRCYRNALALWREAAE 768
                 6999***********************9876654 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.016
      TPR_14   6 alaeallalGdpdeAiallrrala.....laPdda 35 
                  l++ ++a+G p  A+++ rral+      +Pd +
  KIR64240.1 778 HLGDSHRAAGAPGPARRAWRRALKilellGHPDAD 812
                 589999****************9944432245555 PP

>> SNAP  Soluble NSF attachment protein, SNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.9e-07   0.00014      70     177 ..     608     715 ..     597     733 .. 0.86
   2 ?    0.6   0.2      0.43   3.1e+02      43      75 ..     754     786 ..     742     802 .. 0.55

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.9e-07
                 -HHHHHHHH.HHHHHHHHHT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
        SNAP  70 ekdeaanay.veAakcykkvspeeAvealekAieiytekgrfrraAklkkeiaelyekelgdlekAieaYekAaelyeqeeakalankcllkvAelsae 167
                 ++d +a+a+   A  c++  + ++A  +l+++  +y+  g    +A+ + +++ l e   g++e+A+++ ++A +l++  e      ++l ++  ++++
  KIR64240.1 608 DRDGQARAHrNRAVACLRLGDHHQARVHLRRSLRLYAGLGDAIGSARAHLNLGILAERL-GRYEQALQHAQQALDLFTAAENPNGRANALNNIGWYHSQ 705
                 44444444415699***************************************999977.*******************99988888999999999999 PP

                 TT-HHHHHHH CS
        SNAP 168 lekyekAiei 177
                 l++  +Ai+ 
  KIR64240.1 706 LGNHRQAIDY 715
                 9999999975 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.43
                 HHHHHT.T-THHHHHHHHHHHHHHHHTT-HHHHH CS
        SNAP  43 naykla.kkweeAgeaflkaAecqeklkekdeaa 75 
                 ++y+ a   w+eA+e + +a ++ + l++++ aa
  KIR64240.1 754 RCYRNAlALWREAAERYYEATTLTH-LGDSHRAA 786
                 3333331235555555555555544.44444444 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.5       9.7   6.9e+03      39      56 ..     102     120 ..      99     130 .. 0.66
   2 ?   -2.2   0.5       9.6   6.9e+03      14      27 ..     170     183 ..     169     189 .. 0.75
   3 ?   -1.2   1.3       4.8   3.4e+03      19      48 ..     482     511 ..     479     515 .. 0.74
   4 ?    7.2   5.2     0.011       7.9      19      65 ..     602     644 ..     599     646 .. 0.84
   5 !   22.9   3.0   1.4e-07    0.0001       1      61 [.     657     720 ..     652     726 .. 0.92
   6 ?    4.6   6.3     0.073        52      14      61 ..     750     800 ..     738     804 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 9.7
      TPR_16  39 llgdaalrqgrlaeAa.al 56 
                   +daa    rl +Aa a+
  KIR64240.1 102 RIADAAHTEDRLRAAAhAQ 120
                 5567777777777777665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 9.6
      TPR_16  14 ddAaaaleaalkrd 27 
                 ++A+ al+a+l+ +
  KIR64240.1 170 RAALTALDALLAHR 183
                 67899999998876 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 4.8
      TPR_16  19 aleaalkrdpssPdaaeAllllgdaalrqg 48 
                 ++ ++++ +  + ++++Al  l d++l+ g
  KIR64240.1 482 YAAELVAEHEPEQARRQALGRLIDSYLHTG 511
                 447777777655559999999999999987 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.011
      TPR_16  19 aleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 a+ ++ +rd      a+A+ ++++a+lr+g++  A+  +r+ lr ++
  KIR64240.1 602 AASRVADRD---G-QARAHRNRAVACLRLGDHHQARVHLRRSLRLYA 644
                 666777777...3.89********************99999998876 PP

  == domain 5  score: 22.9 bits;  conditional E-value: 1.4e-07
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPd.....aaeAllllgdaalrqgrlaeAaalyraal 61 
                 l+l+ +a r+g+y++A+  +++al+++    +     +a Al++ g+ + ++g++  A++++  al
  KIR64240.1 657 LNLGILAERLGRYEQALQHAQQALDLFT--AAenpngRANALNNIGWYHSQLGNHRQAIDYCTQAL 720
                 6899***********************3..335799*************************99987 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.073
      TPR_16  14 ddAaaaleaalkrdpssPd...aaeAllllgdaalrqgrlaeAaalyraal 61 
                 ++A++ ++ al+++++  +    a  l +lgd++ ++g   +A+ + r+al
  KIR64240.1 750 AEAIRCYRNALALWREAAEryyEATTLTHLGDSHRAAGAPGPARRAWRRAL 800
                 6788888888888877777877999999****************5555555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.4e-06     0.001       3      95 ..     193     289 ..     191     340 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.4e-06
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C...........CHHHHCCSCCCEEEEEE-S CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvse...........vwavllelperlLlilDgl 90 
                 +++ G aG+GKT L+ + a++ a++ ++++     ++++lr +   g+a s+a++l++ l +++ p ++           +++vl    +r+L +lD +
  KIR64240.1 193 CLISGTAGVGKTSLAVGWAHQVADRFPDGQ-----LYVNLRGFDATGPAASPAEVLREFLEALGVPAQRvpagqdarsglYRSVL--TGRRVLVLLDNA 284
                 799*********************999995.....8***************************9999999999998885544444..456888888876 PP

                 TT-SS CS
       NACHT  91 Delvt 95 
                  ++ +
  KIR64240.1 285 GDVDQ 289
                 66554 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   6.0   3.1e-06    0.0022       1      26 []     613     638 ..     613     638 .. 0.97
   2 !   15.8   4.2   2.1e-05     0.015       1      26 []     653     678 ..     653     678 .. 0.96
   3 ?   -1.5   0.0       8.1   5.8e+03       8      20 ..     700     712 ..     695     713 .. 0.87
   4 ?   -0.8   0.2       5.1   3.6e+03       6      24 ..     738     756 ..     733     758 .. 0.81
   5 ?    0.1   1.5       2.5   1.8e+03       3      26 .]     775     798 ..     772     798 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.1e-06
       TPR_4   1 arallaLArallalGdldeAraller 26 
                 ara+ ++A a+l+lGd+ +Ar +l+r
  KIR64240.1 613 ARAHRNRAVACLRLGDHHQARVHLRR 638
                 79***********************8 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.1e-05
       TPR_4   1 arallaLArallalGdldeAraller 26 
                 ara+l+L+ ++ +lG++++A++++++
  KIR64240.1 653 ARAHLNLGILAERLGRYEQALQHAQQ 678
                 79*********************986 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 8.1
       TPR_4   8 ArallalGdldeA 20 
                 ++ + +lG++ +A
  KIR64240.1 700 GWYHSQLGNHRQA 712
                 678899****998 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 5.1
       TPR_4   6 aLArallalGdldeArall 24 
                  L+ a+++l + +eA +  
  KIR64240.1 738 SLGYAHHRLEQQAEAIRCY 756
                 5999****99999997765 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 2.5
       TPR_4   3 allaLArallalGdldeAraller 26 
                 +l  L+  + a+G +  Ar++++r
  KIR64240.1 775 TLTHLGDSHRAAGAPGPARRAWRR 798
                 567899999999999999999997 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.094        67      13      33 ..     613     633 ..     610     634 .. 0.92
   2 !    7.3   0.1    0.0095       6.8      12      34 .]     652     674 ..     651     674 .. 0.93
   3 !    9.3   0.3    0.0023       1.6       9      33 ..     688     713 ..     677     714 .. 0.88
   4 ?   -1.1   0.0       4.5   3.2e+03      16      33 ..     736     753 ..     732     754 .. 0.85
   5 ?   -1.7   0.0       7.1   5.1e+03      18      32 ..     771     785 ..     769     785 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.094
      TPR_17  13 adaynnLAelllknGdlmtAr 33 
                 a a+ n+A++ l++Gd+ +Ar
  KIR64240.1 613 ARAHRNRAVACLRLGDHHQAR 633
                 67999**************97 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0095
      TPR_17  12 nadaynnLAelllknGdlmtArq 34 
                 +a a+ nL+ l +++G++++A+q
  KIR64240.1 652 SARAHLNLGILAERLGRYEQALQ 674
                 6889*****************97 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0023
      TPR_17   9 dPnn.adaynnLAelllknGdlmtAr 33 
                 +Pn  a+a+nn +++++++G++++A+
  KIR64240.1 688 NPNGrANALNNIGWYHSQLGNHRQAI 713
                 78855*******************97 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 4.5
      TPR_17  16 ynnLAelllknGdlmtAr 33 
                 +  L+++++++ + ++A+
  KIR64240.1 736 WDSLGYAHHRLEQQAEAI 753
                 7789**********9997 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 7.1
      TPR_17  18 nLAelllknGdlmtA 32 
                 + A++l ++Gd+ +A
  KIR64240.1 771 YEATTLTHLGDSHRA 785
                 55999******9998 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       4.9   3.5e+03      22      36 ..     416     430 ..     416     430 .. 0.90
   2 ?   -1.6   0.0         3   2.2e+03      28      42 .]     613     627 ..     612     627 .. 0.89
   3 ?    1.3   0.0       0.4   2.9e+02      28      42 .]     653     667 ..     652     667 .. 0.85
   4 ?    5.4   0.3      0.02        15       7      23 ..     666     682 ..     665     683 .. 0.93
   5 !   13.0   1.7   8.7e-05     0.062       1      33 [.     740     772 ..     740     773 .. 0.93
   6 ?   -2.9   0.0         8   5.7e+03      13      23 ..     792     802 ..     780     802 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.9
      TPR_11  22 kldPdnaeayynLGl 36 
                 +ld ++a+a+  LGl
  KIR64240.1 416 NLDATSARAFRLLGL 430
                 599**********96 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3
      TPR_11  28 aeayynLGlayykqG 42 
                 a+a+ n+++a +++G
  KIR64240.1 613 ARAHRNRAVACLRLG 627
                 89*******999987 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.4
      TPR_11  28 aeayynLGlayykqG 42 
                 a+a++nLG +  ++G
  KIR64240.1 653 ARAHLNLGILAERLG 667
                 89******9887776 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.02
      TPR_11   7 qGkyeeAieaYkkAlkl 23 
                 +G+ye+A+++ ++Al+l
  KIR64240.1 666 LGRYEQALQHAQQALDL 682
                 7*************987 PP

  == domain 5  score: 13.0 bits;  conditional E-value: 8.7e-05
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayyn 33 
                 G+a + + +  eAi +Y++Al+l  + ae yy+
  KIR64240.1 740 GYAHHRLEQQAEAIRCYRNALALWREAAERYYE 772
                 8899999****************9999999995 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 8
      TPR_11  13 AieaYkkAlkl 23 
                 A  a+++Alk+
  KIR64240.1 792 ARRAWRRALKI 802
                 78899****97 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.95   6.8e+02      15      30 ..     491     507 ..     478     507 .. 0.79
   2 ?    3.1   0.1      0.25   1.8e+02       5      30 ..     618     643 ..     612     645 .. 0.83
   3 !    9.5   0.6    0.0022       1.6       2      29 ..     655     682 ..     654     683 .. 0.92
   4 ?    1.9   0.0      0.62   4.5e+02       5      25 ..     698     718 ..     695     721 .. 0.82
   5 ?    2.7   0.3      0.33   2.4e+02       6      27 ..     739     760 ..     738     770 .. 0.87
   6 ?    1.2   0.0         1   7.2e+02       6      28 ..     779     801 ..     776     804 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.95
                 HHHHHHH.HHHHHHHH- CS
       TPR_6  15 dtdkAle.alerlikeY 30 
                 ++++A++ al rli++Y
  KIR64240.1 491 EPEQARRqALGRLIDSY 507
                 67899999*******99 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHHHHHHHHHHHH- CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeY 30 
                 ++a + ++lgd+ +A+  l+r ++ Y
  KIR64240.1 618 NRAVACLRLGDHHQARVHLRRSLRLY 643
                 5678888889*******999987777 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlike 29 
                 A ++l+ + ++lg++++Al+  ++ ++ 
  KIR64240.1 655 AHLNLGILAERLGRYEQALQHAQQALDL 682
                 889********99***********9986 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.62
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealer 25 
                 ++++ + +lg++++A+++  +
  KIR64240.1 698 NIGWYHSQLGNHRQAIDYCTQ 718
                 5788888899******99776 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerli 27 
                 l++++ +l + ++A++ +++ +
  KIR64240.1 739 LGYAHHRLEQQAEAIRCYRNAL 760
                 799999977999******9876 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 1
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerlik 28 
                 l+ s+r++g +  A++a++r +k
  KIR64240.1 779 LGDSHRAAGAPGPARRAWRRALK 801
                 899****9899999999999876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   0.00011     0.077      34      59 ..     191     216 ..     165     230 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
      AAA_25  34 elallaGapgtGKttlaldlalavat 59 
                 +++l+ G  g+GKt la+ +a+ va 
  KIR64240.1 191 TICLISGTAGVGKTSLAVGWAHQVAD 216
                 56899*******************94 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       6.1   4.4e+03      28      44 ..     342     358 ..     342     360 .. 0.86
   2 ?   11.9   0.6   0.00022      0.16       3      52 ..     417     466 ..     415     498 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 6.1
                 HHHHTSSHHHHHHHHHH CS
      MarR_2  28 arrlglsksavsrilkr 44 
                 a+rl  ++ a++ri++ 
  KIR64240.1 342 ADRLESEPEATTRIVDA 358
                 789999999*****986 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00022
                 --HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2   3 ltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52 
                 l+ + ar+   Lg +pg+d++v +la   g + + + r+l+ Lv+a L+ 
  KIR64240.1 417 LDATSARAFRLLGLHPGPDVSVPALASLVGAPVAEAGRTLAALVRANLLS 466
                 667889999**************************************984 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.9   3.5e+03      40      57 ..     491     508 ..     484     509 .. 0.78
   2 ?    8.3   0.3    0.0034       2.4       4      39 ..     653     688 ..     650     704 .. 0.82
   3 ?   -0.3   0.0       1.6   1.1e+03      26      39 ..     708     721 ..     691     729 .. 0.80
   4 ?    6.0   0.2     0.017        13      19      39 ..     748     768 ..     745     778 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.9
         MIT  40 ekneerrellrekieeYl 57 
                 e ++ rr++l + i +Yl
  KIR64240.1 491 EPEQARRQALGRLIDSYL 508
                 477899********9998 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0034
         MIT   4 AlelvkkAveeDnagnyeeAlelYkealelLlqalk 39 
                 A + ++  + +++ g ye Al+  ++al+l++ a +
  KIR64240.1 653 ARAHLNLGILAERLGRYEQALQHAQQALDLFTAAEN 688
                 66677888999********************99875 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.6
         MIT  26 lYkealelLlqalk 39 
                 + ++a+++++qal 
  KIR64240.1 708 NHRQAIDYCTQALV 721
                 67899999999986 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.017
         MIT  19 nyeeAlelYkealelLlqalk 39 
                 + +eA+++Y++al l+ +a  
  KIR64240.1 748 QQAEAIRCYRNALALWREAAE 768
                 678***********9998875 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2     0.037        27      19      53 ..     607     641 ..     599     655 .. 0.83
   2 ?   10.9   2.7   0.00068      0.49       5      53 ..     627     681 ..     624     687 .. 0.90
   3 ?    7.0   2.1     0.011       8.1       5      56 ..     667     724 ..     663     734 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.037
      TPR_19  19 qedpknaearllLAeallalgqldeAealLdalpe 53 
                 ++  ++a+a  + A a+l lg+  +A+  L + ++
  KIR64240.1 607 ADRDGQARAHRNRAVACLRLGDHHQARVHLRRSLR 641
                 55667999999****************99988766 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00068
      TPR_19   5 gdyaeAlalleqalqedpk......naearllLAeallalgqldeAealLdalpe 53 
                 gd+ +A  +l++ l  +++      +a+a l+L ++   lg++++A +  +++++
  KIR64240.1 627 GDHHQARVHLRRSLRLYAGlgdaigSARAHLNLGILAERLGRYEQALQHAQQALD 681
                 9***********9999999999999**********************98888776 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.011
      TPR_19   5 gdyaeAlalleqal.....qedpk.naearllLAeallalgqldeAealLdalpeedp 56 
                 g+y++Al++ +qal     +e+p+  a+a+ +    + +lg+  +A++ + +++  ++
  KIR64240.1 667 GRYEQALQHAQQALdlftaAENPNgRANALNNIGWYHSQLGNHRQAIDYCTQALVLQR 724
                 89**********9955555558888888888999999999999999988777665555 PP

>> DUF3856  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0089       6.4      57      86 ..     655     684 ..     643     688 .. 0.84
   2 ?    5.1   0.3     0.031        22      61     130 ..     692     763 ..     685     772 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0089
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
     DUF3856  57 chaglsealaklgrydealesadkalryfn 86 
                 +h  l     +lgry++al+ a++al  f 
  KIR64240.1 655 AHLNLGILAERLGRYEQALQHAQQALDLFT 684
                 56666677789***************9985 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.031
                 HHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH.HHHHHH.HHHHHHHHTT-HHHHHHHHHHHHHHH CS
     DUF3856  61 lsealaklgrydealesadkalryfnrrGeleqdeGkl.Wiaavf.sravaleelGrkdealkafrmagemi 130
                  ++al ++g y++ l    +a+ y  +   l+++ G+  W a  + s + a + l +++ea++ +r a  + 
  KIR64240.1 692 RANALNNIGWYHSQLGNHRQAIDYCTQALVLQRQVGNRyWQAHTWdSLGYAHHRLEQQAEAIRCYRNALALW 763
                 589999*************************999886526665553678999**************997665 PP

>> DUF5112  Domain of unknown function (DUF5112)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2    0.0071       5.1      19      56 ..     672     711 ..     657     717 .. 0.79
   2 ?    3.2   0.1      0.07        50     190     220 ..     710     740 ..     703     768 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0071
     DUF5112  19 tklaAekalkl..aegysagkaeAlNnlaFvaiarmdyee 56 
                 + + A++al l  a+++++g+a+AlNn+++++    ++ +
  KIR64240.1 672 ALQHAQQALDLftAAENPNGRANALNNIGWYHSQLGNHRQ 711
                 567899998763378899************9976555555 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.07
     DUF5112 190 lkefdyLlkcyllakkkgyiYfeanalqals 220
                  ++ dy +++++l ++ g+ Y++a++ ++l 
  KIR64240.1 710 RQAIDYCTQALVLQRQVGNRYWQAHTWDSLG 740
                 57899********************998885 PP

>> DUF5113  Domain of unknown function (DUF5113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.033        23       8      37 ..     653     682 ..     647     688 .. 0.84
   2 ?    0.7   0.1      0.55   3.9e+02       8      37 ..     693     722 ..     686     733 .. 0.84
   3 ?    3.2   0.7     0.098        70       4      56 ..     729     779 ..     726     797 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.033
     DUF5113   8 andYanlayylnvegeyeeALeyldsaley 37 
                 a ++ nl+  +   g+ye+AL+ +++al++
  KIR64240.1 653 ARAHLNLGILAERLGRYEQALQHAQQALDL 682
                 66777888888999**************86 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.55
     DUF5113   8 andYanlayylnvegeyeeALeyldsaley 37 
                 an+  n++ y    g++++A++y ++al +
  KIR64240.1 693 ANALNNIGWYHSQLGNHRQAIDYCTQALVL 722
                 8889999999999*************9965 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.098
     DUF5113   4 llqiandYanlayylnvegeyeeALeyldsaleylNahyekYakkkadtldkl 56 
                  +  a ++ +l+y+    ++  eA+++ ++al +  +  e+Y++ +  tl++l
  KIR64240.1 729 RYWQAHTWDSLGYAHHRLEQQAEAIRCYRNALALWREAAERYYEAT--TLTHL 779
                 577899999**********************************998..46555 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.017        12       8      29 ..     620     641 ..     618     644 .. 0.86
   2 ?    2.4   0.0      0.23   1.6e+02      13      29 ..     665     681 ..     659     688 .. 0.91
   3 ?    0.9   0.0      0.67   4.8e+02      11      31 ..     703     723 ..     700     728 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.017
                 HHHHHHHT-HHHHHHHHHHHHH CS
  Fis1_TPR_C   8 AlGhyklgeYseArryvdalLe 29 
                 A+++++lg++ +Ar  +++ L+
  KIR64240.1 620 AVACLRLGDHHQARVHLRRSLR 641
                 9*************88877665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.23
                 HHT-HHHHHHHHHHHHH CS
  Fis1_TPR_C  13 klgeYseArryvdalLe 29 
                 +lg+Y++A++ +++ L 
  KIR64240.1 665 RLGRYEQALQHAQQALD 681
                 9*********9999885 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.67
                 HHHHT-HHHHHHHHHHHHHHT CS
  Fis1_TPR_C  11 hyklgeYseArryvdalLeiE 31 
                 h  lg++++A  y+ + L ++
  KIR64240.1 703 HSQLGNHRQAIDYCTQALVLQ 723
                 5679**********9998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 5464.66
//
Query:       KIR64241.1  [L=348]
Description: serine protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-06   28.7   0.5    3.8e-06   26.9   0.1    2.0  2  Trypsin          Trypsin


Domain annotation for each model (and alignments):
>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   2.1e-10   3.8e-06      15      47 ..     124     157 ..     113     256 .. 0.74
   2 ?   -0.5   0.0     0.051   9.2e+02     184     214 ..     305     336 ..     305     347 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 2.1e-10
                 EEEEEETTCEEEEEEEEEETTEEEEEGGGTTT...G CS
     Trypsin  15 qvslsvksgkhlCgGslisenwvlTAaHCvsn...a 47 
                 +v l +++g   C+G++ise++v TAaHC+++   +
  KIR64241.1 124 VVRLVFTGG--QCTGFMISERTVATAAHCLHSggsS 157
                 455666665..6*******************96442 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.051
                 EEEETTTEEEEEEEEE.SSSSCTTSEEEEEEG CS
     Trypsin 184 PlvcsdgelvGivswg.kgcakgnrpgvytkv 214
                 P vc + ++ Gi+s g  g +   + ++++++
  KIR64241.1 305 PCVCPTPTVLGILSRGpFGSGPSATNNIAVRM 336
                 8899999*******777554444444455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2600.24
//
Query:       KIR64242.1  [L=123]
Description: hypothetical protein TK50_00480 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-11   42.7   0.2    5.1e-11   42.3   0.2    1.2  1  Inhibitor_I36  Peptidase inhibitor family I36


Domain annotation for each model (and alignments):
>> Inhibitor_I36  Peptidase inhibitor family I36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.2   2.9e-15   5.1e-11       3      66 ..      29      99 ..      27     102 .. 0.92

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 2.9e-15
  Inhibitor_I36  3 aaasdCp.agyfClysdangtGtraelsgssa......avganmndnarSvwNrtgsrvtvYtdanytgel 66
                   +a  dCp a+ +Cl++++n+tG+r +l + ++      +v+a++ d+arS++N ++++++++ + ++ g +
     KIR64242.1 29 SAVGDCPfANTLCLFEGTNFTGERLTLTSLVSpgtcvsLVDAGWGDRARSAINTSSRSAAMFMNDDCAGGA 99
                   57789997899****************999999*****99***************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.29s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 825.32
//
Query:       KIR64243.1  [L=501]
Description: carboxylesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-86  291.5   0.0    1.1e-85  288.5   0.0    1.9  1  COesterase       Carboxylesterase family
    7.5e-10   39.0   0.5    1.2e-09   38.3   0.5    1.3  1  Abhydrolase_3    alpha/beta hydrolase fold
    0.00012   21.6   0.2    0.00019   21.0   0.2    1.2  1  Peptidase_S9     Prolyl oligopeptidase family
      0.007   16.2   0.0       0.02   14.7   0.0    1.6  2  Pectate_lyase_3  Pectate lyase superfamily protein


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.5   0.0   2.4e-89   1.1e-85       3     473 ..       7     457 ..       5     486 .. 0.83

  Alignments for each domain:
  == domain 1  score: 288.5 bits;  conditional E-value: 2.4e-89
                 SEEEETTEEEEEEEEEESTCSEEEEEEEEESSB---GGGTTS--BE----SSEEECBS---BESEECSSSSSCGHHCHHHBES---EEEEEEESSSSST CS
  COesterase   3 pvvetslGkvrGkrvklksekevdaFlGiPYAepPvgelRFkkPepaepwtgvrdAtkfspaCpqnaeksekeekeleawvsEDCLyLnvytPkekkea 101
                 p+ +t +G + G r          +F+GiPYAepPvg+lRF++P+p + w+gvr A  ++p  pq   +  ++++     v +D L+Lnv+tP+  ++ 
  KIR64243.1   7 PEARTMVGVLHGSREA-----GLAVFRGIPYAEPPVGDLRFAAPQPGRGWEGVRPAVAYGPPPPQPGAFGMSPQS-----VGDDWLTLNVWTPA--PDP 93 
                 6677888888888888.....89********************************************99888886.....89***********8..678 PP

                 TSSEEEEEEE--STTTS-BGCG..S-THHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHH CS
  COesterase 102 kkklPVlVwihGggfqtgsase..ydgsaLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWVkenIasFGGdpervtlfGesAGaas 198
                   ++PV+Vwi Ggg+ +g +    ydg +La + + +vVt+nYRlG+ GF     + ap N GllDqv+AL+WV++nI +FGGdp+rvt+fG+sAG+ s
  KIR64243.1  94 AARMPVMVWIPGGGYLVGCSGLpeYDGGHLAGS-GTVVVTLNYRLGFEGFGEI--DGAPANRGLLDQVAALEWVRDNIRAFGGDPDRVTVFGQSAGGGS 189
                 9999**************996667*********.99*****************..57****************************************** PP

                 HHHHHHSGGGTTSBSEEEEES..--TTSTTTSBSH.HHHHHHHHHHHTTS-CSSHH......HHHHHHHCS-HHHHHHCCGGSSSSSSTTC-SSS-B-- CS
  COesterase 199 vsllllsplsrglfkraIlqS..Gsalspwaiqkk.arkrakklakkvgckasssk......elveclrsksaeelldaqekaleasssklvsfaPvvd 288
                 v++ll+ p ++glf+r+++qS  G+       +++ a + a + a+++g + + ++        +  + +    ++++ +e  +   +   ++faPvvd
  KIR64243.1 190 VAALLAMPRAAGLFRRVVAQSipGTF-----FSPDlAADIAAACAAELGVRPTLADlstvapARLPAVGQAISARIVAWRER-WGRITHRPIPFAPVVD 282
                 *********************33333.....333448888999999999933333332334555555666666666666655.9999999********* PP

                 SSSSSS-HHHHHHCGC..CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSTTTSSTCHHHHHHHHHHHH CS
  COesterase 289 gdflpekPeellkseg..kvplliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaekkeelseaikeeytdeadrddaeksrkallell 385
                 gd+lp++P ++l+  +  +v+ll+G ++de  lf    ld    + +   +++e++l+  +            +       +  ++ +++  ++l el+
  KIR64243.1 283 GDVLPATPWRALADGAarDVELLVGHTRDEHRLFSL--LDGV--LGQVTPEQAETALRMLAP---------GTDGS----CRYREAFPDATDEQLYELV 364
                 **************77******************98..3331..222222222222111111.........11222....3445677777777887777 PP

                 H.HHHTHHHHHHHHHHHHHTT-SEEEEEEE--STTSSST...TTGSSBTTTTHHHHTTGGGTSGCS......S-HHHHHHHHHHHHHHHHHHHHSSTT CS
  COesterase 386 t.dvlfkapvlrtaklhasrgspvYlYsfdyrnssskkp...kwmgvvhgdeleyvfglpllekee......ftkedeklsrkmmtywtnFaktgnPn 473
                 + d lf++p+l++a++  + g ++YlY+ + ++     p      g++hg ++++vfg+    +           + ++ls ++   wt Fa +g+P 
  KIR64243.1 365 NaDWLFRMPSLHLADAQLAGGGRAYLYELTWPA-----PglgGSLGACHGLDVPLVFGNLTSGQPAmligdpPAPAAQELSGQIRGAWTAFAANGDPG 457
                 449**************************9998.....6666889**************99998889999865556999*****************95 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.5   2.8e-13   1.2e-09       1     103 [.     100     209 ..     100     232 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 2.8e-13
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTT.......S-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPe.......hpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaava 89 
                    +v++ GGG+++g +  ++    +la  +g vvv  +Yrl  e       +p+   + d +aal+w++++  ++g dp+r++++G+SaGG  +aa++
     KIR64243.1 100 MVWIPGGGYLVGCSGLPEYDGGHLAG-SGTVVVTLNYRLGFEgfgeidgAPANRGLLDQVAALEWVRDNIRAFGGDPDRVTVFGQSAGGGSVAALL 194
                    68999************999999997.899**********986666655688889**************99***********************99 PP

                    HHHHHTT---.EEEE CS
  Abhydrolase_3  90 lrardegepk.vagq 103
                     + r++g  + v++q
     KIR64243.1 195 AMPRAAGLFRrVVAQ 209
                    999998755444444 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.2   4.3e-08   0.00019      10      95 ..     123     209 ..     121     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 4.3e-08
                   HHCCT-EEEEE--T.TSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTT...S--GGGEEEEEETHHHHHHHHHHH..H-GGG-SEEEEE CS
  Peptidase_S9  10 ladrGyvvvvanir.GsggyGeafhdagkrklgqnefdDfiaaaealakeg...yvdserlaitGgSyGGyltgaaln..qrpdlFkaavae 95 
                   la  G vvv  n+r G +g+Ge     +++   ++ + D++aa+e++ ++      d++r+ ++G S+GG  ++a+l+  ++  lF+ +va+
    KIR64243.1 123 LAGSGTVVVTLNYRlGFEGFGE-----IDGAPANRGLLDQVAALEWVRDNIrafGGDPDRVTVFGQSAGGGSVAALLAmpRAAGLFRRVVAQ 209
                   5677899999999844455553.....99999999************776543367**************9999998866788899999987 PP

>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.5e-06      0.02      31     114 ..      95     179 ..      70     195 .. 0.83
   2 ?   -1.8   0.0      0.51   2.3e+03      56      86 ..     425     455 ..     415     476 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.5e-06
                      .HTSS-EEE-SEEEEES.S-EEE-SSEEEEES-TTTEEEEE-TT-SS--SEEES-TTT-..-EEEEEEEEEEEGGGG-SS---SS CS
  Pectate_lyase_3  31 tttgavVYfPaGtYlvs.spiilksgvqLvGdgngrpvlkaaaafvgaglidgdpyvsggsealiatnnfyrqirnlkiditava 114
                       + + +V++P G Ylv  s++  ++g +L G g+ + +l ++ +f+g g idg p ++g  +++ a   ++++ir +  d ++v+
       KIR64243.1  95 ARMPVMVWIPGGGYLVGcSGLPEYDGGHLAGSGTVVVTLNYRLGFEGFGEIDGAPANRGLLDQVAALEWVRDNIRAFGGDPDRVT 179
                      567889**********758899**********************************98844666777777777888877777664 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.51
                      EEEEES-TTTEEEEE-TT-SS--SEEES-TT CS
  Pectate_lyase_3  56 vqLvGdgngrpvlkaaaafvgaglidgdpyv 86 
                        L+Gd+ +++  +++++++ga++  + +  
       KIR64243.1 425 AMLIGDPPAPAAQELSGQIRGAWTAFAANGD 455
                      5699***999999999999999998776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3405.00
//
Query:       KIR64244.1  [L=94]
Description: hypothetical protein TK50_00490 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 725.52
//
Query:       KIR64245.1  [L=540]
Description: hypothetical protein TK50_00495 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0013   19.0   0.0      0.042   14.2   0.0    2.7  1  fn3              Fibronectin type III domain
  ------ inclusion threshold ------
      0.021   15.4   0.1       0.33   11.5   0.1    2.6  1  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
       0.05   13.8   0.0       0.12   12.6   0.0    1.6  1  fn3_2            Fibronectin type III domain


Domain annotation for each model (and alignments):
>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   7.1e-06     0.042       1      73 [.     337     404 ..     337     414 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.1e-06
                 TCECEEEEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTSTEEEEE.ECST.SSEEEEESSSTTEEEEEEE CS
         fn3   1 saPsnlsvsevtstsltvsWeppkdgggpitgYeveyrekgseeewneft.vprt.ttsvtltgLkpgteYevrV 73 
                 ++P ++ v+ v++ts+++sW+            e e+r ++s+ +++     p+t  +s+ +tgL+pgt+Y + +
  KIR64245.1 337 PQPARVGVTGVSNTSMMLSWDDVA-------MGEAEWRLVRSGVPDVVLAgTPGTgRMSHLVTGLQPGTQYCFLL 404
                 68999****************994.......334556666666544444434444355*************8765 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.6e-05      0.33      63      86 ..     388     411 ..     337     418 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.6e-05
  Pur_ac_phosph_N  63 katltgLepgttYyYrvgddeggw 86 
                      + ++tgL+pgt+Y++  g+++ gw
       KIR64245.1 388 SHLVTGLQPGTQYCFLLGARSPGW 411
                      4579***********999998777 PP

>> fn3_2  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.9e-05      0.12       3      71 ..     337     404 ..     335     410 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.9e-05
       fn3_2   3 PkaPvlkvknvtqtsvvleWdklelataklksLslykngqrlgkip..nplkntstKlsgLsvdteyefql 71 
                 P+   + v  v  ts++l Wd++ +++a+ +   l ++g+  +++     + + s  ++gL+  t+y f l
  KIR64245.1 337 PQPARVGVTGVSNTSMMLSWDDVAMGEAEWR---LVRSGVPDVVLAgtPGTGRMSHLVTGLQPGTQYCFLL 404
                 788889999*******************987...4455554444331112344455567777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3762.70
//
Query:       KIR64246.1  [L=224]
Description: uridylate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-06   27.7   0.0    3.3e-06   27.4   0.0    1.1  1  Cytidylate_kin2  Cytidylate kinase-like family
    2.4e-05   24.8   0.0    3.2e-05   24.4   0.0    1.5  1  AAA_16           AAA ATPase domain
     0.0045   16.3   0.2     0.0096   15.2   0.0    1.6  2  Zeta_toxin       Zeta toxin
     0.0061   17.1   0.0      0.014   15.9   0.0    1.7  1  AAA_18           AAA domain
     0.0062   16.0   0.0      0.011   15.2   0.0    1.3  1  KTI12            Chromatin associated protein KTI12
     0.0065   16.2   0.0      0.014   15.2   0.0    1.5  1  Cytidylate_kin   Cytidylate kinase
  ------ inclusion threshold ------
      0.011   16.0   0.0      0.051   13.8   0.0    2.0  2  AAA_28           AAA domain
      0.022   14.9   0.1      0.091   12.9   0.0    2.0  2  AAA_33           AAA domain
      0.027   13.5   0.0      0.039   12.9   0.0    1.2  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.062   13.2   0.0       0.18   11.7   0.0    2.0  1  NACHT            NACHT domain
        0.1   12.3   0.1        0.2   11.4   0.1    1.4  1  AAA_30           AAA domain
       0.12   12.9   0.0       0.18   12.4   0.0    1.3  1  ABC_tran         ABC transporter
       0.12   12.1   0.0       0.22   11.3   0.0    1.3  1  AAA_29           P-loop containing region of AAA domain
       0.14   11.8   0.0        1.7    8.3   0.0    2.0  2  Thymidylate_kin  Thymidylate kinase


Domain annotation for each model (and alignments):
>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   2.6e-09   3.3e-06       2     145 ..      28     183 ..      27     212 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2.6e-09
  Cytidylate_kin2   2 ITIsreyGsgGetigeaLAekLglpfydreiieevakelglseeev...eevdersrlssflskllaarvagdtl....deklddelfeaqerv 88 
                      ++I++  ++g++t++++LA  L  +   r+ii+++++++ +++++     e++ + ++ +++++ + +r+  d+l    d+ ++ ++++ ++++
       KIR64246.1  28 VAIDGPPAAGKTTLADELAVLL--RAQGRDIIRATIDDFLFPRAQRyprSEYSAEGCYLHTHDHDALNRMLLDPLgpggDRRFQPAVYDHTTDT 119
                      7899999*************99..99*******************965545555888888888888888888888****666666666655333 PP

  Cytidylate_kin2  89 irela..aeesvVivGRgadliLkd...rpnvlrvfltapledrvkr.vaeregls.eeearek 145
                        + +     +  ++ + + ++L+    +++ lr+f++  le+ v+r v +++++s +++++++
       KIR64246.1 120 TLSPPirTAPTDAVLIFDGVFLLRPeliHRWDLRIFVSTALERTVDRaVIRQRHVSsRADVERR 183
                      3333323445778999*********9*9*******************64555566514444443 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.5e-08   3.2e-05       5      69 ..       6      72 ..       5     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.5e-08
      AAA_16  5 ReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql..esaipy 69
                R+e l++L++a+++v    p  v + G+++ GK++l++el+  l+++g   +r++ d++  ++a +y
  KIR64246.1  6 RDEMLARLAAAVGSVTVAHPTRVAIDGPPAAGKTTLADELAVLLRAQGRDIIRATIDDFlfPRAQRY 72
                9************9999999*********************88888877778888888866555444 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.5e-06    0.0096      13      60 ..      22      68 ..      12      98 .. 0.84
   2 ?   -2.4   0.2       1.8   2.3e+03     129     156 ..     169     191 ..     158     209 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.5e-06
  Zeta_toxin 13 qerPklillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelhPe 60
                  +P+ + + G p+AGK++la++l+  l+ ++++++r   Dd+  l+P+
  KIR64246.1 22 VAHPTRVAIDGPPAAGKTTLADELAVLLRaQGRDIIRATIDDF--LFPR 68
                578999**********************988899999999998..5555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
  Zeta_toxin 129 vavkkelSrlgvldRyeeevaegRlvpk 156
                 + ++   Sr +v+ R +e     R++p 
  KIR64246.1 169 IRQRHVSSRADVERRWRE-----RYIPS 191
                 333333444444444333.....45554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.1e-05     0.014       1      26 [.      28      51 ..      28     100 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.1e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrlgfgv 26
                +++ G+p++GKttla+eL+ +l    
  KIR64246.1 28 VAIDGPPAAGKTTLADELAVLL--RA 51
                6788**************9887..33 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.4e-06     0.011       4      50 ..      28      75 ..      27      81 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.4e-06
                EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH.TTSS.S--G CS
       KTI12  4 vvltGlPssGKstrakeLakaleeekrsvvviddeslgiekds.ykds 50
                v + G P++GK+t+a+eLa  l++++r+++    + + + + + y  s
  KIR64246.1 28 VAIDGPPAAGKTTLADELAVLLRAQGRDIIRATIDDFLFPRAQrYPRS 75
                5678************************99877666666655546555 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-05     0.014       1      24 [.      28      51 ..      28      56 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-05
                    EEEE-STTSSHHHHHHHHHHHHT- CS
  Cytidylate_kin  1 iaiDGPagsGKssvaralaeklgl 24
                    +aiDGP ++GK ++a +la  l +
      KIR64246.1 28 VAIDGPPAAGKTTLADELAVLLRA 51
                    79*****************98876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     4e-05     0.051       1      29 [.      27      59 ..      27      97 .. 0.81
   2 ?   -0.2   0.1      0.84   1.1e+03     107     143 ..     148     186 ..     114     202 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4e-05
      AAA_28  1 kivitGgestGKTtlleaLa....argypvvpE 29
                +++i G++ +GKTtl+ +La    a+g  +++ 
  KIR64246.1 27 RVAIDGPPAAGKTTLADELAvllrAQGRDIIRA 59
                7999****************7776557766654 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.84
      AAA_28 107 krydl.vfllppapei.dddgeRredleereaiderlre 143
                 +r+dl +f+    + + d+   R+ ++  r+++++r re
  KIR64246.1 148 HRWDLrIFVSTALERTvDRAVIRQRHVSSRADVERRWRE 186
                 466664444444444435555566666667777666666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.1e-05     0.091       5      22 ..      31      51 ..      28     121 .. 0.79
   2 ?   -0.5   0.2      0.95   1.2e+03     103     131 ..     155     183 ..     142     200 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.1e-05
      AAA_33  5 vGlpGsGKstlaerl...lkk 22
                 G+p++GK+tla++l   l++
  KIR64246.1 31 DGPPAAGKTTLADELavlLRA 51
                6*************9433344 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.95
      AAA_33 103 vvetdeetlkeRlakRaangddrsevpee 131
                 +v+t  e   +R   R+++  +r++v+++
  KIR64246.1 155 FVSTALERTVDRAVIRQRHVSSRADVERR 183
                 55566666666666666665555555554 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.1e-05     0.039      18      60 ..       9      56 ..       2      63 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.1e-05
                HHHHHGGG-S-.....SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--E CS
        MeaB 18 llerllakaGr.....aqvvGltGvPGaGkstlvealglelrrrGkrv 60
                +l rl a  G       ++v + G P aGk tl ++l++ lr++G+ +
  KIR64246.1  9 MLARLAAAVGSvtvahPTRVAIDGPPAAGKTTLADELAVLLRAQGRDI 56
                55666655554111114689*************************876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014      0.18       3      43 ..      28      71 ..      26     208 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
                EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC...-SEEEEEETT CS
       NACHT  3 vilqGeaGsGKTtLlqklalawaegklpqga...fklvFflslr 43
                v++ G++  GKTtL+ +la++++++  +  +    +++F   +r
  KIR64246.1 28 VAIDGPPAAGKTTLADELAVLLRAQGRDIIRatiDDFLFPRAQR 71
                899*****************998765444333445555554444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00016       0.2      12      52 ..      19      59 ..      12      63 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
      AAA_30 12 alltsgdrvavltGpAGtGKttalkalreaweaaggrvigl 52
                +++  +   +++ Gp+ +GKtt+  +l+ +++a+g+++i +
  KIR64246.1 19 SVTVAHPTRVAIDGPPAAGKTTLADELAVLLRAQGRDIIRA 59
                555555556889***********************999865 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014      0.18       5      42 ..      19      56 ..      17      93 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
                EEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  5 slklkegekvaivGenGaGKStLlkllagllkpteGei 42
                s+++ + ++vai G+  aGK+tL+  la ll+ +  +i
  KIR64246.1 19 SVTVAHPTRVAIDGPPAAGKTTLADELAVLLRAQGRDI 56
                68899999****************99999988654444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00018      0.22      25      49 ..      28      52 ..      17      56 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
      AAA_29 25 tlltGpsGsGKSTllDAiqalLvpa 49
                + + Gp  +GK+Tl D +++lL ++
  KIR64246.1 28 VAIDGPPAAGKTTLADELAVLLRAQ 52
                7899*****************9876 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0013       1.7       1      28 [.      30      57 ..      30      61 .. 0.88
   2 ?    1.3   0.0      0.19   2.4e+02     120     160 ..     152     189 ..     134     202 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0013
                     EEESTTSSHHHHHHHHHHHHHHTTE.EE CS
  Thymidylate_kin  1 iEGlDGaGKttqaellkerlkeegikvv 28
                     i+G   aGKtt a+ l+  l+++g+ ++
       KIR64246.1 30 IDGPPAAGKTTLADELAVLLRAQGRDII 57
                     788889******************8754 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.19
                      EEEEEESSHHHHHTSCCTTSS.TTTSHHHHHHHHHHHHHHHH CS
  Thymidylate_kin 120 ltflldvdpevalkRlakrde.ldeeeeeqldflrkvreryl 160
                      l +++    ++al+R  +r+  +++ +  + d+ r+ rery 
       KIR64246.1 152 LRIFV----STALERTVDRAViRQRHVSSRADVERRWRERYI 189
                      44444....477777777777677799999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1686.89
//
Query:       KIR64247.1  [L=732]
Description: hypothetical protein TK50_00520 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-08   33.1  13.4    1.8e-06   28.3   3.2    4.5  4  HisKA_3      Histidine kinase
     0.0012   18.8   0.0      0.003   17.5   0.0    1.6  1  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.064   13.8   0.0        4.3    7.9   0.0    2.8  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   3.2   3.1e-10   1.8e-06       1      42 [.     174     216 ..     174     235 .. 0.69
   2 ?    0.4   0.1      0.16   9.7e+02      38      58 ..     276     296 ..     266     299 .. 0.86
   3 ?   -1.4   0.0      0.57   3.4e+03      14      36 ..     322     344 ..     320     354 .. 0.81
   4 !    5.7   2.3    0.0037        22      34      63 ..     591     620 ..     549     623 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 3.1e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.....TT-HHHHHHHH CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrll.....ekdpekaaeql 42 
                 ER+r++ ELHD+ g++L+ai + +++a rl+     e    +a e++
  KIR64247.1 174 ERRRLSAELHDVAGHRLTAILVSAGAALRLAdpvlrE----RAIEHA 216
                 9***************************999422222....333333 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3  38 aaeqlreieelarealqevRr 58 
                 ++e+l++i + ar+a + vR 
  KIR64247.1 276 VREALTNIMRYARGAAASVRI 296
                 7899*************9995 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.57
                 HHHHHHHHHHHHHHHHHTTT-HH CS
     HisKA_3  14 gqsLsaiklqlelakrllekdpe 36 
                 g+ ++++++++e++ + l++ p+
  KIR64247.1 322 GHGIAGLRARVEAVGGDLDAGPD 344
                 899***********999988887 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0037
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3  34 dpekaaeqlreieelarealqevRrllhnL 63 
                  +++ a +l+e++++ar  l  +Rrllh L
  KIR64247.1 591 LAAAEAGRLDEVAAQARAGLVALRRLLHGL 620
                 33466789********************98 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     5e-07     0.003      35      76 ..     275     312 ..     256     322 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5e-07
  HATPase_c_2  35 aveEactNavehayleapegpvevrlesdeealtvevaDsGp 76 
                   v Ea+tN++++a+  a     +vr++ d++ +tv+v D+G 
   KIR64247.1 275 IVREALTNIMRYARGAAA----SVRITADPGGFTVTVLDRGG 312
                  799***********9655....666779************95 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00072       4.3       7      47 ..     273     312 ..     269     358 .. 0.83
   2 ?    2.3   0.0     0.039   2.3e+02      68     110 ..     677     729 ..     658     731 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00072
                 HHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSS CS
   HATPase_c   7 rqiisnlvdNavkfatkageieveikaseddlvisveDnGi 47 
                 + i++++++N +++ + +   +v+i+a+ + ++++v D G 
  KIR64247.1 273 HGIVREALTNIMRY-ARGAAASVRITADPGGFTVTVLDRGG 312
                 5699**********.6666667777765789*******995 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.039
                 CHTSTSSSHHHHHH.............HHHHHHTTTEEEEEEETTTEEEEEEEEES CS
   HATPase_c  68 krggggtGlGlsiv.............kklvelmgGeiwvesepgrGttftftlpl 110
                 ++++g +G+Gl +              ++ ++  +G++ v +++   tt++++lp+
  KIR64247.1 677 TVTYGASGIGLEVRrcppvgaevlrslRESTDAANGSVAV-DTD--RTTVRVWLPE 729
                 5678888999998888888888887777777789999999.444..7******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.49
# Mc/sec: 4482.57
//
Query:       KIR64248.1  [L=312]
Description: hypothetical protein TK50_00530 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2289.63
//
Query:       KIR64249.1  [L=277]
Description: hypothetical protein TK50_00535 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-23   81.9   0.1    6.3e-23   80.8   0.1    1.7  1  DUF4096      Putative transposase of IS4/5 family (DUF4096)
    1.9e-11   44.0   2.0    1.9e-10   40.8   1.9    2.1  1  DDE_Tnp_1    Transposase DDE domain
    0.00048   20.4   0.0    0.00089   19.6   0.0    1.5  1  DDE_Tnp_1_2  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DUF4096  Putative transposase of IS4/5 family (DUF4096)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.1   1.1e-26   6.3e-23       1      75 []      11      89 ..      11      89 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 1.1e-26
     DUF4096  1 LtDeqWellepllpepkkrr....GrprkvdlrevlngIlyvlrtGcpWrdLPedfgswstvyrrfrrWskagvwerif 75
                L+D+qW+++ p+l+++k r+    G++ +++lre++n+I+y  rtGc+W +LP+d+++ s+ y++f+ W+++g+ + i+
  KIR64249.1 11 LNDDQWAVVGPFLQAWKDRHpsvsGHQGRYELREIVNAIFYQNRTGCQWAYLPHDLPPKSATYYYFALWRDDGTDQVIH 89
                79***************999*****************************************************988776 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   1.9   3.2e-14   1.9e-10       3     184 ..     105     232 ..     103     250 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 3.2e-14
   DDE_Tnp_1   3 krevlivDattvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvitpgnvhdskglkqlldelrpr..kgklvlaDaGYa.saelldtleek 98 
                 +++ +++D +++r+  +  +a  g+++ k+ +g+k+ +avd+  gli++vv+t+++v d+  ++ lld + ++  + +  ++DaG+    +++ ++   
  KIR64249.1 105 DPSAVVLDTQSIRAANHVPAATTGKDAAKKVPGRKRGLAVDAL-GLIIAVVVTAASVTDNAIGIRLLDNVLAHtpTVTKAWVDAGFKdDVQIHGAIN-- 200
                 57889**************************************.9*****************************9999********97788887777.. PP

   DDE_Tnp_1  99 gvdyiirlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwl 184
                                               +  +++ +s+ + ++                         +  ++Rw++E+++++l
  KIR64249.1 201 -----------------------------GIDVEQVLRSDTTAGF-------------------------VPVKRRWVVEQTHGTL 232
                 .............................7777777778888888.........................8888888888888876 PP

>> DDE_Tnp_1_2  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.5e-07   0.00089      35      71 ..     208     244 ..     175     261 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.5e-07
  DDE_Tnp_1_2  35 kaapkkqarederarnvvErsfgwlkrrrslatryek 71 
                   +   + ++++ ++r+vvE ++g l+  r+l++ ye 
   KIR64249.1 208 LRSDTTAGFVPVKRRWVVEQTHGTLMLHRRLVREYES 244
                  4556678999*************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2073.92
//
Query:       KIR64250.1  [L=139]
Description: hypothetical protein TK50_00540 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.015   15.6   0.1       0.32   11.3   0.1    2.1  2  TSC22     TSC-22/dip/bun family
       0.12   11.1   0.9       0.17   10.6   0.9    1.2  1  HAUS5     HAUS augmin-like complex subunit 5


Domain annotation for each model (and alignments):
>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   3.5e-05      0.32      16      39 ..      21      44 ..      15      55 .. 0.88
   2 ?    2.1   0.0     0.028   2.5e+02      16      38 ..     106     128 ..     100     137 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.5e-05
       TSC22 16 VevLkekIkeLeernseleeENsl 39
                Ve L+++I+ L e+ ++ e+E + 
  KIR64250.1 21 VERLRTQIASLDEQLTAAETEVAE 44
                9******************99765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.028
       TSC22  16 VevLkekIkeLeernseleeENs 38 
                  e+L+ k k L++r    e E  
  KIR64250.1 106 TENLRAKLKRLVARQILTEPEAG 128
                 699******99999888877765 PP

>> HAUS5  HAUS augmin-like complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.9   1.9e-05      0.17      82     118 ..      14      50 ..       8      55 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 1.9e-05
       HAUS5  82 reelekeverLraeirrldkeleareeelsreeaevk 118
                   ++  +verLr++i+ ld++l+a+e e+++   ++k
  KIR64250.1  14 ETAAVLAVERLRTQIASLDEQLTAAETEVAELAITRK 50 
                 3455679**********************97666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1027.66
//
Query:       KIR64251.1  [L=257]
Description: CAAX protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-14   52.5   6.8    4.8e-14   52.5   6.8    2.0  2  CPBP           CPBP intramembrane metalloprotease
  ------ inclusion threshold ------
        1.4    8.6   3.1        2.1    8.0   3.1    1.2  1  DUF2981        Protein of unknown function (DUF2981)


Domain annotation for each model (and alignments):
>> CPBP  CPBP intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.15   1.4e+03      45      51 ..      73      79 ..      22     141 .. 0.60
   2 !   52.5   6.8   5.4e-18   4.8e-14       4      91 ..     151     240 ..     148     241 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.15
                HHHHHHC CS
        CPBP 45 silFgla 51
                +i+F+l+
  KIR64251.1 73 GIVFALL 79
                3333333 PP

  == domain 2  score: 52.5 bits;  conditional E-value: 5.4e-18
                 THHHHHHHHHHHHHHHHHHHTTCHHHHHHHH.S-.HHHHHHHHHHHHHCSGGGHHH.HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
        CPBP   4 lllvfllalllapllEEllfRglllqllqergss.tlailissilFglaHlpngps.vllaalaGlvlgylylktgsllaaillHallnl 91 
                  + v++la+  +++lEE++  g+l+++l++  ++  +++++s++l g +Hl++g+  ++  a++G+v+g+ yl+t+++++ i++H+ll++
  KIR64251.1 151 AVPVLILAAAQNAVLEEVIVVGYLVTRLRQLQWRlGAVLAASAVLRGSYHLYQGFGaFVGNAVMGVVFGLFYLRTKRVMPLIVAHTLLDV 240
                 5778999************************999888889999**********9889******************************997 PP

>> DUF2981  Protein of unknown function (DUF2981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.1   0.00024       2.1      20      90 ..     169     252 ..     163     254 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00024
     DUF2981  20 lvlhYLhPsLhkvawlllgvnaisavlG.......flGalkRslvveavYlvfyl....islvlvvltvLdmaelv..hllPka 90 
                 +v+ YL   L ++ w l  v a+savl         +Ga+  + v+  v+  fyl    +   +v+ t+Ld+   v   llPka
  KIR64251.1 169 IVVGYLVTRLRQLQWRLGAVLAASAVLRgsyhlyqGFGAFVGNAVMGVVFGLFYLrtkrVMPLIVAHTLLDVVAFVgyALLPKA 252
                 5899***********************77****995666666666666666666511115556667788888888744478887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1746.28
//
Query:       KIR64252.1  [L=372]
Description: flavohemoprotein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-13   50.7   0.0    5.4e-13   49.5   0.0    1.6  1  Globin         Globin
      2e-12   47.3   0.0    3.3e-12   46.6   0.0    1.3  1  FAD_binding_6  Oxidoreductase FAD-binding domain
      1e-10   42.2   0.0    2.4e-10   41.0   0.0    1.6  2  NAD_binding_1  Oxidoreductase NAD-binding domain
      0.005   16.9   0.0     0.0081   16.2   0.0    1.3  1  FAD_binding_8  FAD-binding domain


Domain annotation for each model (and alignments):
>> Globin  Globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   1.2e-16   5.4e-13       3     110 .]       6      98 ..       5      98 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 1.2e-16
                 HHHHHHHHHHHTHHHHHHHHHHHHHHHHSGGGGGGSTTTTTTT-HHHHCTSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHCSTT--HHH CS
      Globin   3 alvkaswekvkanaeelgaeilkrlFkaypdtkklFkkfgdlssaedlksspkfkahakkvlaalgeavknldndealkaalkklaarHaergkvdpan 101
                 +l+k+sw  v+++++ l  ++++rlF  +p+++ lF+ + +            +  ++ ++l+a+  a + +d++e ++++l+ l+++H++++ vd+a+
  KIR64252.1   6 RLLKESWTLVEEDRDRLSGHFYARLFLLDPALRPLFP-V-E------------MTGQGDRILDAIVTATQVVDDPESFDEYLRSLGRDHRKYH-VDAAH 89 
                 589**********************************.8.5............67**************************************.***** PP

                 HHHHHHHHH CS
      Globin 102 Fklfgeall 110
                 ++++g all
  KIR64252.1  90 YETMGVALL 98 
                 ****99885 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   7.3e-16   3.3e-12       4      97 ..     145     238 ..     142     239 .. 0.89

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 7.3e-16
                    EEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--TT.-HHHHHH.HCS-TT-EEEEEEEE-SE CS
  FAD_binding_6   4 ltekeevsedtrifrfklpsekqklglpvGqhvflrlkikgeaviRsYtpissenekGelellvkvypg.GkmsqaL.delkigdtleikGPlGkf 97 
                    + ++e+  +dt++++++    +++l+ ++Gq+v ++++ +  +v+R Y++++++n+++ le++v++ pg G +s aL +++++gd l++ +P+G++
     KIR64252.1 145 VLTHERHGQDTAVLTVRAL--QHQLRWRAGQYVSVEVPRHLPRVWRTYSVANAPNDDNVLEFHVRTPPGaGWVSGALvRRTRPGDLLRVAAPMGSM 238
                    5566777788888877654..7889*************99999************************766*******899**************86 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.8   1.3e+04      65      84 ..     112     131 ..      75     138 .. 0.65
   2 !   41.0   0.0   5.5e-14   2.4e-10       2     107 ..     251     350 ..     250     352 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.8
                    SCTTTSSSEESSHHHHHHHH CS
  NAD_binding_1  65 reeagweggkgrvqdallee 84 
                    + ++ w++  g +++++l  
     KIR64252.1 112 EYDQAWRDAYGAISAKMLAG 131
                    44566777777777777665 PP

  == domain 2  score: 41.0 bits;  conditional E-value: 5.5e-14
                    EEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEEE CS
  NAD_binding_1   2 iagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvyv 97 
                    +agG+G+aP+++++++++ + ++ + v+++yG+r+ +dl+  + l+el +++p+ l v+++ s+e++  +g++g ++d +   + +    +++ yv
     KIR64252.1 251 VAGGVGLAPIKALVEELAGW-NRARWVHIFYGARHAADLYGLAGLRELVEAHPW-LSVTPACSEEPDF-DGERGDISDVI-TRYGP--WTTHDCYV 340
                    8******************9.999******************************.99**996666655.5*******999.55555..699***** PP

                    ECSHHHHHHH CS
  NAD_binding_1  98 CGppgMikav 107
                     G  +M++ +
     KIR64252.1 341 SGSARMVRST 350
                    ******9875 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.8e-06    0.0081      13      70 ..     152     208 ..     140     221 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.8e-06
  FAD_binding_8  13 eedliklkvskpkkslkykaGqyvyinipslsklfwqsHPFtiasape.ddklslvikv 70 
                    ++d+  l+v+  +++l++ aGqyv +++p+  +    +  +++a+ap+ d+ l+ ++++
     KIR64252.1 152 GQDTAVLTVRALQHQLRWRAGQYVSVEVPRHLPR--VWRTYSVANAPNdDNVLEFHVRT 208
                    577778888888889*************766666..5788********66678999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2680.78
//
Query:       KIR64253.1  [L=510]
Description: formylmethionine deformylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-28   99.8   0.0    2.2e-28   98.9   0.0    1.4  1  Pep_deformylase  Polypeptide deformylase
    2.6e-10   40.5   0.8    7.3e-10   39.1   0.8    1.8  1  HTH_31           Helix-turn-helix domain
    4.2e-05   23.5   0.0    7.4e-05   22.7   0.0    1.4  1  HTH_3            Helix-turn-helix
     0.0003   20.8   0.0    0.00074   19.5   0.0    1.6  1  HTH_19           Helix-turn-helix domain
      0.006   15.9   0.1      0.013   14.8   0.1    1.5  1  DUF4824          Domain of unknown function (DUF4824)
  ------ inclusion threshold ------
      0.031   14.2   0.0       0.06   13.3   0.0    1.4  1  HTH_37           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Pep_deformylase  Polypeptide deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.0   7.4e-32   2.2e-28       4     155 ..     338     491 ..     336     493 .. 0.89

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 7.4e-32
                      ---TT-GGGCS--B---..BSS....HHHHHHHHHHH..HHHHHHC.T-SEEEGGGGT--BSEEEEECCSS-ETT....SEEEEEEEEEEECSC CS
  Pep_deformylase   4 ivkvgdpvLrekakpve..kfe....skelekllekm..letmkea.kgvgLAApQigvnkrlfvielpseeeeeeenkeltvliNPkitskse 88 
                      iv+ g ++Lr+++++++    e    ++ +e+l + +  l++++   kgvg+AApQ g+  + +v++ p++  e+       vl+NP+++ +s 
       KIR64253.1 338 IVQRGADLLRQPSRQFDlpA-EegiaREVVERLGSALvrLDELHPFsKGVGIAAPQLGLAWAAAVVRPPDRAAEP------VVLLNPRVVDSSP 424
                      9999***********99642.234555666666666666666666668************************985......5************ PP

                      EEECCEE--TTSTT--CEEEEESCEEEEEE-TTS-EEEEEEEHHHHHHHHHHHHHCTT--GGGGC-T CS
  Pep_deformylase  89 etitdeEgClSvpgieakVeRskrikvkyldltgkeveleaegllArvlqHEiDhlnGklfidridk 155
                      et ++ EgClS+ ++++ V+R+ ri v+  + +g++ +  +e  +Ar++ HE+Dhl+G l++dr+++
       KIR64253.1 425 ETDEQYEGCLSFFDHRGLVPRPLRIDVEHAQWDGTRLITSFEFAMARLVAHEVDHLEGRLYVDRMTP 491
                      ****************************************************************985 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.8   2.4e-13   7.3e-10       2      59 ..      13      69 ..      12      74 .. 0.94

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 2.4e-13
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpa 59
                ++a+L++ R+++GLs++++A + g+ +s++s++E  r+ rp++++ +++  +l +++a
  KIR64253.1 13 FAAELARHRTERGLSKKQLATLMGFDPSYVSHVEGRRH-RPTEDFARRAEAVLEASGA 69
                899***********************************.9*********999999987 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.5e-08   7.4e-05       2      48 ..      18      64 ..      17      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.5e-08
                HHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHH CS
       HTH_3  2 kelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaL 48
                ++ R ++gls+++LA ++G  +s++s+ E  + +P+ + + + + +L
  KIR64253.1 18 ARHRTERGLSKKQLATLMGFDPSYVSHVEGRRHRPTEDFARRAEAVL 64
                67799************************999999999999888777 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.5e-07   0.00074       4      51 ..      17      62 ..      15      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.5e-07
      HTH_19  4 LkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaea 51
                L + R e+gl++++la   g+++s+ s+ E g+++ p+ e++ ++aea
  KIR64253.1 17 LARHRTERGLSKKQLATLMGFDPSYVSHVE-GRRHRPT-EDFARRAEA 62
                7899**************************.6565995.999998886 PP

>> DUF4824  Domain of unknown function (DUF4824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   4.3e-06     0.013      60     127 ..      20      87 ..       7      96 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.3e-06
     DUF4824  60 ersllwldeeklaeL.GFaaed.aevedaeerykrqlarevllvLEldGpayqqelerarerlekaraal 127
                 +r+++ l++++la L GF+ +  ++ve +++r + + ar++  vLE  G  +q+++e  +  l + r+a+
  KIR64253.1  20 HRTERGLSKKQLATLmGFDPSYvSHVEGRRHRPTEDFARRAEAVLEASGAIWQRFREYDE--LRHGRSAT 87 
                 455899******9966****99999******************************99776..55555444 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     2e-05      0.06      19      52 ..      13      46 ..       7      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2e-05
                HHHHHHHHHHHCT--HHHHHHHHT--HHHHHHHH CS
      HTH_37 19 lalaiaeliekrelsqseaaqllgiaqPkvsrll 52
                 a+++a+ + +r+ls++++a+l+g + + vs+++
  KIR64253.1 13 FAAELARHRTERGLSKKQLATLMGFDPSYVSHVE 46
                5788***************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3531.37
//
Query:       KIR64254.1  [L=570]
Description: hypothetical protein TK50_00590 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4328.53
//
Query:       KIR64255.1  [L=236]
Description: methyltransferase type 12 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-10   39.5   0.0      1e-09   38.4   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
    1.2e-07   32.4   0.0    1.9e-07   31.7   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
    6.6e-07   29.9   0.0    1.1e-06   29.2   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    1.4e-06   28.9   0.0    2.4e-06   28.1   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
     0.0033   16.7   0.0     0.0049   16.1   0.0    1.2  1  NNMT_PNMT_TEMT   NNMT/PNMT/TEMT family
     0.0083   15.5   0.0      0.037   13.4   0.0    1.8  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.063   13.2   0.0      0.087   12.7   0.0    1.2  1  XhoI             Restriction endonuclease XhoI


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   4.1e-13     1e-09      24     162 ..      38     171 ..      23     174 .. 0.75

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 4.1e-13
  Methyltransf_23  24 grvLdiGcGtGillevlren..gfsvtgvDlspeaveiaekakkaqkdqfdeqeaae.pqgkfdlIvlrevlehvpdppellrqiatllkpgGy 114
                       + ++iG G G  + + +++  +f+ t  D++ +++++ e    ++   ++++  +  + g +  +v+ +vleh++d+  +lr++++l++pgG+
       KIR64255.1  38 DNPIEIGSGLGDYALEWSAHlpRFTATEADPD-RLIALKERLAEQPTIEVRQMLLPHsERGDYSAAVSYNVLEHIEDHVGALRSMRDLVRPGGN 130
                      56689999999877777776335677777775.3555544444444444444433333667********************************* PP

  Methyltransf_23 115 lllseplaslkedrllldwlylvpagrhisffsarslkelleeaGlev 162
                      +++ +p+ +      +  +  +++a +h++ ++ ++l+ ++ eaGl+v
       KIR64255.1 131 VIIIVPAFE------FA-MSPADIATGHVRRYTKKTLAAAMTEAGLTV 171
                      ******533......22.23357788********************98 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   7.4e-11   1.9e-07       2      98 ..      42     130 ..      41     131 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 7.4e-11
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLkp 95 
                      eiG+G G+++ ++ ++    ++t+++ +p+ + + ke+la++       +e+++  l  ++  + + + v+ nvl+h++d   +l+++r+l++p
       KIR64255.1  42 EIGSGLGDYALEWSAH--LPRFTATEADPDRLIALKERLAEQPT-----IEVRQMLLPHSER-GDYSAAVSYNVLEHIEDHVGALRSMRDLVRP 127
                      9***************..77888888888888789999999995.....5555555444433.39***************************** PP

  Methyltransf_12  96 gGr 98 
                      gG 
       KIR64255.1 128 GGN 130
                      **6 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   4.4e-10   1.1e-06       2      96 .]      42     133 ..      41     133 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 4.4e-10
                      EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGllv 95 
                      ++G+G G +a ++  +  r ++++ ++  l + ke+  e++  +e++++ + +   e + + + vs++vl+h+ed+  al+ ++ +++pgG ++
       KIR64255.1  42 EIGSGLGDYALEWSAHLPRFTATEADPDRLIALKERLAEQPT-IEVRQMLLPH--SERGDYSAAVSYNVLEHIEDHVGALRSMRDLVRPGGNVI 132
                      89************999*************999*****9994.6666666655..45578*******************************988 PP

                      E CS
  Methyltransf_11  96 i 96 
                      i
       KIR64255.1 133 I 133
                      6 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   9.4e-10   2.4e-06       3      97 .]      42     129 ..      41     129 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 9.4e-10
                      EET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEE CS
  Methyltransf_25   3 dlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpg 96 
                      ++G G G+++l+++++l   ++t+++ +++ l a +er++e ++ +e++q+ + +   e g + + vs ++l+h++  d+  al+ ++++++pg
       KIR64255.1  42 EIGSGLGDYALEWSAHL--PRFTATEADPDRLIALKERLAE-QPTIEVRQMLLPHS--ERGDYSAAVSYNVLEHIE--DHVGALRSMRDLVRPG 128
                      89**************9..7*******************65.58999999887665..5667******877***98..778************* PP

                      E CS
  Methyltransf_25  97 G 97 
                      G
       KIR64255.1 129 G 129
                      9 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.9e-06    0.0049     173     239 ..     109     176 ..     101     196 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.9e-06
                     SSHHHHHHHHHHHHTTEEEEEEEEEEE.ECS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG CS
  NNMT_PNMT_TEMT 173 edleeylralrnlasllkpGGhlvlgg.vleeseynvGekkfsllalekeevlealkkaglkveelkk 239
                     e++e ++ alr++  l++pGG +++++ ++e  +  +  ++ ++ + +k+++ +a+++agl+ve+ + 
      KIR64255.1 109 EHIEDHVGALRSMRDLVRPGGNVIIIVpAFEFAMSPADIATGHVRRYTKKTLAAAMTEAGLTVEKIHY 176
                     57889999*************987654399***9999***************************9874 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.4e-05     0.037      39     152 ..      28     134 ..      13     147 .. 0.82
   2 ?   -0.5   0.0      0.25   6.4e+02     201     227 ..     157     184 ..     148     190 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
                      HHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-.GGG-S- CS
  Ubie_methyltran  39 veklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfG.lrnvtD 131
                        +l  ++ g + +++ +G gD+a++ s ++  +++ +  + +++ L   +++l e+ +i+++      + Lp ++    + +vs+  l  + D
       KIR64255.1  28 FVELAVPHLGDNPIEIGSGLGDYALEWSAHLP-RFTAT--EADPDRLIALKERLAEQPTIEVR-----QMLLPHSERGDYSAAVSYNvLEHIED 113
                      45667778899999999999**9999999874.55554..55578899999999999999987.....577999999988999***835789** PP

                      HHHHHHHHHHHEEEEEEEEEE CS
  Ubie_methyltran 132 klkaLkeayrvlkpGGrlvvl 152
                      +  aL++++  ++pGG+++++
       KIR64255.1 114 HVGALRSMRDLVRPGGNVIII 134
                      *****************9986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.25
                      HHHHHHHHHHTTEE..EEEEEEEGGGTEE CS
  Ubie_methyltran 201 qetlkeliedaGfk..sveyesltgGvva 227
                      ++tl++ + +aG++  +++y + + G++ 
       KIR64255.1 157 KKTLAAAMTEAGLTveKIHYAN-ALGLIG 184
                      689*********8611556655.345555 PP

>> XhoI  Restriction endonuclease XhoI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.4e-05     0.087      28      64 ..     159     195 ..     145     225 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.4e-05
        XhoI  28 lllelllaaGlaekeiyvkkelelPGffrptkewdll 64 
                 +l+  +++aGl+ ++i+  ++l l G+f +tk + l+
  KIR64255.1 159 TLAAAMTEAGLTVEKIHYANALGLIGYFMATKVFRLM 195
                 5677899*************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1705.71
//
Query:       KIR64256.1  [L=177]
Description: PEBP family protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-37  127.1   0.0    8.9e-37  126.4   0.0    1.3  1  PBP       Phosphatidylethanolamine-binding protein


Domain annotation for each model (and alignments):
>> PBP  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   0.0     5e-41   8.9e-37       4     132 .]      36     173 ..      33     173 .. 0.94

  Alignments for each domain:
  == domain 1  score: 126.4 bits;  conditional E-value: 5e-41
                 GGG.....CSBGGS-EEEEES--TTSSEEEEEEEETTSCCTCTTEEEEEEEEEETTSSEE-TTC........EE-B-TTSSCCCCS---B--STTS..E CS
         PBP   4 kky.....egentsPplswsdvpegtksyalvviDpDapkvsetflHwvvtnipasvtslpega........vqgknslgeesesgYlgpcPpkgdgkH 89 
                 ++y     +gen+sP+l+ws++p++tks+++++ DpDap+ s+ f+Hwv++++pasvt+lp+g         ++++n++g+   +g++g++Pp+gd++H
  KIR64256.1  36 ARYahgsvGGENVSPHLAWSGFPAETKSFVVTCFDPDAPTGSG-FWHWVLVDVPASVTELPRGVkeadlggaFSVRNDYGD---TGFGGAAPPAGDRPH 130
                 55556666899****************************8888.*****************9888899999999*******...************99* PP

                 EEEEEEEEESSSG--BGSS-SHHHHHHHHCTTEEEEEEEEEEE CS
         PBP  90 rYvfllyaldvealdlkagftraelgaaiaghvlakatlagnY 132
                 rYvf ++a+dve+ld+ ag++ a +g+++a h+la+a++  +Y
  KIR64256.1 131 RYVFAVHAVDVERLDVGAGASCAYVGFNLAFHTLARAVIRPTY 173
                 *******************99*****************99888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       166  (0.00925874); expected 358.6 (0.02)
Passed bias filter:                      152  (0.00847788); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1269.53
//
Query:       KIR64257.1  [L=130]
Description: twitching motility protein PilT [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00029   21.3   0.0    0.00039   20.9   0.0    1.2  1  PIN       PIN domain


Domain annotation for each model (and alignments):
>> PIN  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   2.2e-08   0.00039       4     114 ..       8     109 ..       5     118 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.2e-08
                 -HHHHHHHH.TTSHHHHHHHHHHHTSSEEEEEHHHHHHHHHHHHSSCHCHHHHHHHHHHHHHHHTSEEEEBCHHHHHHHHHHHHHHH.SBHHHHHHHHH CS
         PIN   4 DTsvliall.rgeekaeaarklleeleelvtsalvlaEllyvlarrkskrekaaelvelllllsalkilpidaeiaeeaaeialkyg.llpnDaliaAt 100
                 D+ vl+a+  +++ +   ++ ++ee  +l+++++v+  +++ ++r           v l   l +++++p++ e+a+ a+ +  k+g +++ Da ++ +
  KIR64257.1   8 DAGVLLAIDgNDRRMWVIHHLAVEEGRRLLIPSVVVGQAWRDARR----------QVQLGRFLHSCEVVPVGVELAKAAGVLCGKAGtRDVVDACVVNV 96 
                 666666554555555555555555557777777777777777777..........88888889************************************ PP

                 HHHHT-EEE.ESST CS
         PIN 101 AkehgikliatfDe 114
                 A++ g +++ t D 
  KIR64257.1  97 ALACGGIVF-TSDP 109
                 ******999.9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1014.46
//
Query:       KIR64258.1  [L=88]
Description: hypothetical protein TK50_00610 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-07   29.7   0.7    4.5e-07   29.7   0.7    1.7  2  RHH_5           CopG-like RHH_1 or ribbon-helix-helix domain,
    0.00044   20.7   0.0    0.00067   20.1   0.0    1.3  1  CopG_antitoxin  CopG antitoxin of type II toxin-antitoxin sys
     0.0046   16.9   0.0     0.0072   16.3   0.0    1.3  1  RHH_3           Ribbon-helix-helix domain
  ------ inclusion threshold ------
       0.06   13.3   1.8        0.1   12.6   0.2    2.1  2  RHH_1           Ribbon-helix-helix protein, copG family
       0.12   12.5   0.8       0.17   12.0   0.1    1.7  2  THDPS_M         Tetrahydrodipicolinate N-succinyltransferase 


Domain annotation for each model (and alignments):
>> RHH_5  CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.7   1.2e-10   4.5e-07       3      41 ..       5      43 ..       4      44 .. 0.93
   2 ?   -3.1   0.3       2.1   7.5e+03      20      32 ..      75      87 ..      72      87 .. 0.67

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.2e-10
       RHH_5  3 RvnvtLPeelleeLeewAdeegRsvSnlaafLvekalre 41
                +++vtLPeel e+L   A+e+g+++S l+a  +e  lr+
  KIR64258.1  5 KITVTLPEELVEALGAAASEDGVPLSRLVASAAESELRR 43
                79****************************999987776 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.1
       RHH_5 20 AdeegRsvSnlaa 32
                Ad++   v+++aa
  KIR64258.1 75 ADAQALGVAGQAA 87
                6777666777775 PP

>> CopG_antitoxin  CopG antitoxin of type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.9e-07   0.00067      42      76 ..       3      37 ..       1      40 [. 0.90

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.9e-07
  CopG_antitoxin 42 tksislrlpedlLealkekAnkrdvpyqslikell 76
                    +++i++ lpe+l+eal ++A++ +vp ++l+ ++ 
      KIR64258.1  3 ARKITVTLPEELVEALGAAASEDGVPLSRLVASAA 37
                    57899*************************98765 PP

>> RHH_3  Ribbon-helix-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     2e-06    0.0072       3      32 ..       4      33 ..       3      38 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2e-06
       RHH_3  3 trttvsidpelaekLkaLSekTrIprSkll 32
                +++tv++++el+e L a   + ++p+S+l+
  KIR64258.1  4 RKITVTLPEELVEALGAAASEDGVPLSRLV 33
                579**************************8 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   2.8e-05       0.1       2      38 ..       6      42 ..       5      43 .. 0.88
   2 ?   -0.6   0.1       0.4   1.4e+03      14      21 ..      62      69 ..      61      72 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.8e-05
                EEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHH CS
       RHH_1  2 vsirldeellerLdelarrrgrSrSelIReAlreyle 38
                ++++l+eel+e+L + a + g+  S l+  A++  l 
  KIR64258.1  6 ITVTLPEELVEALGAAASEDGVPLSRLVASAAESELR 42
                8************999999999999999888887775 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.4
                HHHHHHHH CS
       RHH_1 14 Ldelarrr 21
                ++ela++r
  KIR64258.1 62 VEELAAAR 69
                68888876 PP

>> THDPS_M  Tetrahydrodipicolinate N-succinyltransferase middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       2.3   8.4e+03      19      24 ..      38      43 ..      31      49 .. 0.54
   2 ?   12.0   0.1   4.7e-05      0.17       6      32 ..      53      81 ..      50      84 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.3
                HHHHHH CS
     THDPS_M 19 errlrl 24
                e +lr 
  KIR64258.1 38 ESELRR 43
                333333 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4.7e-05
                E.ETTEEE-HHHHHHHHHHHHH.TT---- CS
     THDPS_M  6 W.TnygPvavedfeerrlrlra.agrsvt 32
                W   +g++ ve++++ r+++ a  ++++ 
  KIR64258.1 53 WqAEHGAFTVEELAAARAEMAAaDAQALG 81
                55689****************96665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 608.34
//
Query:       KIR64259.1  [L=101]
Description: hypothetical protein TK50_00615 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.56
# Mc/sec: 547.70
//
Query:       KIR64260.1  [L=124]
Description: hypothetical protein TK50_00625 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0064   16.2   0.2     0.0076   15.9   0.2    1.1  1  DUF5539          Family of unknown function (DUF5539)
  ------ inclusion threshold ------
      0.039   14.3   0.2      0.075   13.4   0.2    1.5  1  Lar_restr_allev  Restriction alleviation protein Lar


Domain annotation for each model (and alignments):
>> DUF5539  Family of unknown function (DUF5539)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   8.5e-07    0.0076     100     157 ..      41      97 ..      33     123 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.5e-07
     DUF5539 100 etagppspagiraqdraprhrrapparmpvapapsadggerraragradaepgwgdpl 157
                    g psp   r   ra   r +  a mpv pa sadg   ++ a    +  g+g  +
  KIR64260.1  41 ADHGGPSPLDWRRLRRAE-ARVTRTATMPVRPAWSADGCVSHSLAVVGWTGCGYGCEI 97 
                 4568899*9999988885.678889*************98888877777777777655 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   8.4e-06     0.075       3      22 ..      97     116 ..      95     121 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.4e-06
  Lar_restr_allev   3 LkpCPfCggravlersqrvv 22 
                      +  CP Cgg++vl+r+++++
       KIR64260.1  97 IVRCPDCGGEQVLHRTEDGY 116
                      568*************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 874.21
//
Query:       KIR64261.1  [L=128]
Description: hypothetical protein TK50_00630 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 945.07
//
Query:       KIR64262.1  [L=284]
Description: hypothetical protein TK50_00635 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   11.7   0.1       0.24   11.1   0.1    1.2  1  MctB      Copper transport outer membrane protein, MctB


Domain annotation for each model (and alignments):
>> MctB  Copper transport outer membrane protein, MctB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   1.3e-05      0.24      41      98 ..      39      96 ..      23     101 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.3e-05
        MctB 41 veelreekeelraeadaleaqleaaddfaaavaprlvagrLtgrsVavvttpdadeed 98
                ++++r  +e++++   +l+++ +++d+ ++  a+ +++g+L++r+V+v + p  d+ +
  KIR64262.1 39 MKQFRIGSEKANDLLARLREERAQQDRSDSLHAAMVLRGSLADRPVLVPVDPTPDTTT 96
                56778888889999999999999999999999999************97766555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2009.43
//
Query:       KIR64263.1  [L=155]
Description: hypothetical protein TK50_00640 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-08   32.8   0.0    8.2e-08   32.4   0.0    1.2  1  DUF3307   Protein of unknown function (DUF3307)
  ------ inclusion threshold ------
        0.1   12.9  10.5       0.07   13.4   4.0    2.1  2  YwiC      YwiC-like protein


Domain annotation for each model (and alignments):
>> DUF3307  Protein of unknown function (DUF3307)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   9.2e-12   8.2e-08       1     107 [.      16     151 ..      16     155 .] 0.81

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 9.2e-12
     DUF3307   1 lllllLlaHllgDFvlQsdklvkkKeskklkskl.lllHalihvlllv..llllllkikl....eqllillvvivlsHllIDvlKskl........... 81 
                 ++++l +aH ++D  +Q+++ +++K +   + +   + H+++  l+++  ll+++++  l      + + l+v +++H++ D                 
  KIR64263.1  16 VFVALYVAHQVADHWVQTQHQADCKGQPGWAGRIaCAAHVTTYTLTALiaLLFVVAGTGLrldpCGVAVGLAVSAVTHYIADRRTPLKriaaalgsarf 114
                 6999*********************998877666699***99988766223344444333666567778889999*******865555577******** PP

     DUF3307  82 ...........kkkkkalaaFliDQllHlivlilvll 107
                             + +    a+ +DQ  H++ l +++l
  KIR64263.1 115 ytlgaprpghdDNPSLGTGAYALDQSWHYAWLFVAAL 151
                 ********99888889999***********9988744 PP

>> YwiC  YwiC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   4.0   7.8e-06      0.07      28     119 ..      10     112 ..       1     118 [. 0.71
   2 ?    3.7   0.5    0.0084        75      17      38 ..     132     153 ..     128     154 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.8e-06
        YwiC  28 hllllvawlvgYlaffplllllka............rrrarylkplliYgavallllllalllqpallwwallflplvavavyeakrkreRsllndlat 114
                   +++++ +++Y+a++ +  ++++            + r + ++ +++Y++ al++ll++++ +   l ++ +++  +av+++  +  + R+ l  +a+
  KIR64263.1  10 AAAFAAVFVALYVAHQVADHWVQTqhqadckgqpgwAGRIACAAHVTTYTLTALIALLFVVAGTGLRLDPCGVAVG-LAVSAVTHYIADRRTPLKRIAA 107
                 34556666789************98888777665444555666699999999999888888877776666655555.4666667777777888888888 PP

        YwiC 115 vaasa 119
                 ++ sa
  KIR64263.1 108 ALGSA 112
                 77776 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0084
        YwiC  17 lGlllagpvwahllllvawlvg 38 
                 +G+ +  ++w   +l+va+l++
  KIR64263.1 132 TGAYALDQSWHYAWLFVAALFC 153
                 78889999**********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1020.85
//
Query:       KIR64264.1  [L=76]
Description: hypothetical protein TK50_00645 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 599.26
//
Query:       KIR64265.1  [L=728]
Description: cell division protein FtsK [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00063   19.2   0.0     0.0037   16.7   0.0    2.0  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
  ------ inclusion threshold ------
        0.1   12.8   0.0       0.18   12.0   0.0    1.3  1  DUF3631       Protein of unknown function (DUF3631)
        0.2   11.8   0.0       0.46   10.6   0.0    1.5  1  DCX           Doublecortin


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.2e-07    0.0037      27     192 ..     360     532 ..     350     558 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.2e-07
                   TS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS.SCGGGTT-TTBSS..S-B-SHHHHHHHHHHHHHHHHHHHH CS
  FtsK_SpoIIIE  27 sgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgv.elsalediphlls.vavatdperalraleeLvkemeerya 121
                   +g+++ ++l+  + ++l+   +g GK+ a ++ +l++a+  +P   +l + D+kg+  l  le++    +  ++ + +e+ l al+eL ke ++r+a
    KIR64265.1 360 RGRIISFELP-YT-NVLIGSIPGYGKTAATQVPLLAAAL--DPY-AELWCFDFKGTgGLDPLEKVSARYAsGQDDDTAEQGLIALRELRKECQRRAA 451
                   5555544443.45.7999999***************999..665.48*********9********9887747778889******************* PP

                   HHHHTT-SSHHH..HHHHHHHHHHTT---B-TT-..............................-----------B----- CS
  FtsK_SpoIIIE 122 lfreagvrsiaa..ydgeiaedpldifgdvflvlDnyddlaaene.......ritsLsn.qgpsygvhvlvtagrelekrp 192
                   +++    +   +  +    a+ ++ +   +++ lD+ ++l    e          ++++ ++  +++ v++t+ + ++ +p
    KIR64265.1 452 VIKGLPKQVCPDnkVTPDLARRKKLGLHWLVVALDEVQELFSHPEfgkeageLAEKVIKlGRALGVILVVATQRPDAKSLP 532
                   **9877766666554444444444445678888888888888777778788744444440444455566666666666444 PP

>> DUF3631  Protein of unknown function (DUF3631)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     3e-05      0.18      77     179 ..     610     715 ..     602     718 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3e-05
     DUF3631  77 taraAcvklvaeakaeeesslgvr...LLadirevfekkdadrlstaelleeLnedeeapWadlrgkpltarkLakkLkeydiksktl.....rlene. 166
                 + r+A+ +l+ +a+ +  ++  +r   LL+di +v+  + + ++  ++l e+L + +  ++ d     lt  +L + Lk y+i+  ++      ++++ 
  KIR64265.1 610 ALREAAGTLTGHAAGQAPTTPAARrdtLLDDILTVV-PATEPKVWAETLTERLADLNGDAYGD-----LTRDQLTAALKPYGITTGQVwgtdpTTGKGa 702
                 568899999877766665554443344*********.777788999*********99997766.....9999999********9998722222233334 PP

     DUF3631 167 qakGYtreqfada 179
                 +++G  r+++ada
  KIR64265.1 703 NRRGIDRQHIADA 715
                 6666677777777 PP

>> DCX  Doublecortin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.7e-05      0.46      22      51 ..     128     158 ..     123     159 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.7e-05
         DCX  22 klpfg.VrklytldGrkvvssldeLedgesY 51 
                 +l +g Vr +++++G++  +s ++ +dge Y
  KIR64265.1 128 RLVSGgVRWVFDWEGEHLRQSTSQTRDGELY 158
                 564455***********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.58
# Mc/sec: 3801.18
//
Query:       KIR64266.1  [L=79]
Description: hypothetical protein TK50_00655 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-05   23.2   0.5    7.5e-05   22.6   0.5    1.2  1  Anti-TRAP      Tryptophan RNA-binding attenuator protein inhi
    7.1e-05   23.1   0.7    9.3e-05   22.7   0.7    1.2  1  DnaJ_CXXCXGXG  DnaJ central domain
    0.00025   21.1   0.1    0.00028   20.9   0.1    1.1  1  HypA           Hydrogenase/urease nickel incorporation, metal


Domain annotation for each model (and alignments):
>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.5   1.3e-08   7.5e-05      12      55 ..      30      71 ..      29      74 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.3e-08
                E-TTTTTTSEETTE......E-TTTTTSSEEE-HHHHHHHHHHH CS
   Anti-TRAP 12 kCdaCngsGkiepeeprasleCPkCsGkglipTaqGqkLldFik 55
                 C  C+g+    ++  ++  +CP+C G g+     G++Lld i+
  KIR64266.1 30 RCRRCHGARSHRTT-IGTRRDCPRCDGTGI-RVRTGRRLLDHIR 71
                6*******999988.99999*********6.6689******997 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.7   1.5e-08   9.3e-05       1      29 [.      31      63 ..      31      76 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.5e-08
  DnaJ_CXXCXGXG  1 CkkCkGsgakkgk...kktCktCkGsG.vvree 29
                   C++C+G  +++++   +++C++C+G+G +vr+ 
     KIR64266.1 31 CRRCHGARSHRTTigtRRDCPRCDGTGiRVRTG 63
                   9*******87655555889********555443 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   4.6e-08   0.00028      58     105 ..      16      66 ..       7      71 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.6e-08
                 TT-EEEEEEE--EEEETTTS-EEECHHH...HHS-TTTSSS-EEEEESSSE CS
        HypA  58 egaeLeieevpvkvrCreCgkefeleek...alrCpkCgsadveivsGeel 105
                 + + L++  v+   rCr+C+   +++++   +  Cp+C+++++++ +G+ l
  KIR64266.1  16 AASYLAVCAVSPWGRCRRCHGARSHRTTigtRRDCPRCDGTGIRVRTGRRL 66 
                 5577999999999******977775553334669**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 543.28
//
Query:       KIR64267.1  [L=100]
Description: hypothetical protein TK50_00660 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 698.38
//
Query:       KIR64268.1  [L=83]
Description: hypothetical protein TK50_00665 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-22   78.0   0.0    7.8e-22   77.8   0.0    1.0  1  DUF4326   Domain of unknown function (DUF4326)


Domain annotation for each model (and alignments):
>> DUF4326  Domain of unknown function (DUF4326)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   4.3e-26   7.8e-22       9      82 ..       2      74 ..       1      75 [. 0.90

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 4.3e-26
     DUF4326  9 pedavyvgRgsklgNpFvvgqe.lgereevvekyreyleeraekdeelkaaleeLrgkeLaCwCk.pkpCHadvll 82
                p  avyvgR++++gNp+   +  +++r+++ e+yr+++ +r    + ++aa+++L+g++LaCwC+ ++pCHadvll
  KIR64268.1  2 PAGAVYVGRPTRYGNPYPATTPtAAGRAAAAEQYRQWIATR---PDLIAAARRDLAGRDLACWCPpDQPCHADVLL 74
                7789*************776655899************777...6899*****************667******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 640.61
//
Query:       KIR64269.1  [L=90]
Description: hypothetical protein TK50_00670 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 724.55
//
Query:       KIR64270.1  [L=320]
Description: DNA primase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-40  139.6   3.2    1.1e-40  139.6   3.2    1.5  2  Prim-Pol       Bifunctional DNA primase/polymerase, N-termina
  ------ inclusion threshold ------
       0.12   12.6   0.1       0.21   11.7   0.1    1.4  1  DAP_epimerase  Diaminopimelate epimerase


Domain annotation for each model (and alignments):
>> Prim-Pol  Bifunctional DNA primase/polymerase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.6   3.2   1.2e-44   1.1e-40       1     158 []       8     204 ..       8     204 .. 0.97
   2 ?   -2.6   0.0      0.71   6.4e+03      24      42 ..     228     246 ..     210     295 .. 0.59

  Alignments for each domain:
  == domain 1  score: 139.6 bits;  conditional E-value: 1.2e-44
    Prim-Pol   1 aleyaergwpvvPl.......ppggKrPlg......................kkwekdattdpeqirawwkkhpranvglatgpsglvvlDvDgke... 67 
                 al+yaergw+v+Pl        + +KrP+                        +we++attdp +ir+ w+++p  ++g+a+gpsglvv+D+D ++   
  KIR64270.1   8 ALAYAERGWHVFPLrpdtrtaDDSAKRPAFpsrctadrcdltdprcktagrhVGWEERATTDPSRIRRAWSTRPY-GIGIACGPSGLVVVDLDVPKpgq 105
                 799***********9999999999999999*****************************************8876.*********************** PP

    Prim-Pol  68 ..........agaealarLareeg.plPetvtvttgstgggrhlyfraPd.glalpnsagklapgldlrgeggyvvappsvhetgraYrwledpreiae 154
                           +g++++a ++ ++g  +  t+tvttg+  gg hly+r+P+ g +l+n+ag+l++ +d+r++ggyvva++s+   gr+Y+++ d +++a+
  KIR64270.1 106 ippadhdlcgNGVDVFATVCHQHGhRIETTYTVTTGR--GGSHLYYRHPStGPTLRNTAGALGWLVDTRAHGGYVVAAGSTV-AGRPYTVALD-VDPAP 200
                 ************************88888********..**********97999****************************.9*******99.***** PP

    Prim-Pol 155 lPew 158
                 lP+w
  KIR64270.1 201 LPDW 204
                 ***9 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.71
    Prim-Pol  24 kkwekdattdpeqirawwk 42 
                 +++   a   ++q+ ++  
  KIR64270.1 228 RHGRYLAAAIRRQVDHLTG 246
                 4444444444444433333 PP

>> DAP_epimerase  Diaminopimelate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.4e-05      0.21      69      98 ..     114     143 ..     111     154 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.4e-05
                    THCCHHHHHHHHHCTTS-S-SEEEEEETTE CS
  DAP_epimerase  69 CGnGvrvfaaylreggletkkevtvetlgG 98 
                    CGnGv vfa+   ++g+  ++++tv t  G
     KIR64270.1 114 CGNGVDVFATVCHQHGHRIETTYTVTTGRG 143
                    *************************99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2162.33
//
Query:       KIR64271.1  [L=519]
Description: hypothetical protein TK50_00680 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3671.08
//
Query:       KIR64272.1  [L=69]
Description: excisionase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-06   27.0   0.0    4.4e-06   26.8   0.0    1.1  1  HTH_17       Helix-turn-helix domain
  ------ inclusion threshold ------
       0.05   13.7   0.0      0.085   13.0   0.0    1.4  2  HTH_Tnp_1_2  Helix-turn-helix of insertion element transposas
      0.099   12.5   0.0       0.21   11.4   0.0    1.6  1  HTH_23       Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   7.4e-10   4.4e-06       1      49 [.      14      64 ..      14      66 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 7.4e-10
      HTH_17  1 lltveEaAelLgvsrstvyrlirrgelpaa.k.iGrrwriprsdleewlek 49
                llt +E+ + L+v rst  ++  +g+ p + k  +++++++r dl+ wl+ 
  KIR64272.1 14 LLTLAEVLDELRVPRSTFFKWKATGRAPRTiKyPNGSLYVRRRDLDHWLND 64
                79*************************8889898899************96 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.4e-05     0.085      27      48 ..      15      36 ..       9      52 .. 0.83
   2 ?   -2.1   0.0      0.66   3.9e+03      37      50 ..      52      65 ..      42      67 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
                 S-HHHHHHHHTS-HHHHHHHHH CS
  HTH_Tnp_1_2 27 ltldeiaeevgvsrsTlykWkk 48
                 ltl+e+ +e+ v rsT++kWk 
   KIR64272.1 15 LTLAEVLDELRVPRSTFFKWKA 36
                 6999****************94 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.66
                 TS-HHHHHHHHH-H CS
  HTH_Tnp_1_2 37 gvsrsTlykWkkkk 50
                  v r+ l +W++++
   KIR64272.1 52 YVRRRDLDHWLNDH 65
                 46677777777665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.5e-05      0.21      18      39 ..      15      36 ..      11      42 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.5e-05
      HTH_23 18 lsvreIAreLgvsrrTvyrwlk 39
                l+ +e+ +eL v+r+T  +w+ 
  KIR64272.1 15 LTLAEVLDELRVPRSTFFKWKA 36
                68899***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 471.89
//
Query:       KIR64273.1  [L=458]
Description: integrase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-13   49.3   0.0    1.4e-12   47.8   0.0    1.7  2  Phage_integrase  Phage integrase family


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.19   3.5e+03     126     144 ..      27      45 ..      12      53 .. 0.71
   2 !   47.8   0.0   7.6e-17   1.4e-12       3     167 ..     241     434 ..     239     437 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.19
                      SC--TTHHHHHHHHHHHHH CS
  Phage_integrase 126 kpltpHtlRhsfataLlea 144
                       ++ + ++R+++ata l +
       KIR64273.1  27 WRVAGKSFRKTYATAALAE 45 
                      4667788999999986655 PP

  == domain 2  score: 47.8 bits;  conditional E-value: 7.6e-17
                      HHHHHHHHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEEC.TTTEEEEE....................EEECSSSSE...EEEEC CS
  Phage_integrase   3 ltedeverllaaleeslkirdklllellyetGlRisEllsLrvkdldl.engvilvh....................eregKgske...ravpl 72 
                      + ++++++ll+a+++  + +   +++ +y  +lR sE++ Lr ++ +l e g  ++h                     re+K + +   r vp 
       KIR64273.1 241 VNPEQARSLLSAVRN-RDPHLEGFFACMYFAALRPSEVIHLRADECELpETGWGWLHlsgstqqvgedwsdggtsleDRELKHRAKkatRDVPA 333
                      6789***********.999**************************998567899***********************788887777778***** PP

                      THHHHHHHHHHHHHHCHCCTTTSBSSBETTSSB--HHHHHHHHHHHHHHCT-S......SC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSC CS
  Phage_integrase  73 seealellkellskaleeaeksellfaskrgkplsrqtvrkafkraveeagie......kpltpHtlRhsfataLleagvdlrvvqkllGHssi 160
                        e+++ l++ l ++ ++a+++ +  a +r  p+s++t+ +a+++a+e+a +        + +p +lRh++ +  l+agv+   v++  GHs  
       KIR64273.1 334 CPELVRILRHHLREHCRNANGRMFNAAGARVAPVSKSTYLRAWRQAREAALTPaqqrspLAHRPYDLRHAAVSLWLNAGVPATQVAQWAGHSVH 427
                      ***********************************************995444777789999*****************************987 PP

                      CHHHHHH CS
  Phage_integrase 161 sttqiYt 167
                         ++Y+
       KIR64273.1 428 VLLKVYA 434
                      7777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3472.65
//
Query:       KIR64274.1  [L=324]
Description: NADPH:quinone oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-28   98.2   1.5    1.7e-27   97.0   1.5    1.6  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    1.7e-23   83.0   2.3    3.2e-23   82.1   2.3    1.4  1  ADH_zinc_N    Zinc-binding dehydrogenase
    1.4e-09   37.8   0.0    1.5e-08   34.5   0.0    2.2  2  ADH_N         Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
       0.03   13.8   0.2      0.061   12.8   0.2    1.5  1  adh_short     short chain dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   1.5   3.9e-31   1.7e-27       1     133 []     182     322 ..     182     322 .. 0.87

  Alignments for each domain:
  == domain 1  score: 97.0 bits;  conditional E-value: 3.9e-31
                   TT-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-......-H CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkas.....aqa 87 
                   lGA+++idyr++df+    ++t+g+g Dv+ld +g  +l ++ +++l+ gGrlv+ig +   +a+l   a+ +k++sv ++ l s ++      +  
    KIR64274.1 182 LGATHAIDYREQDFVeevrRVTDGRGADVILDIMGASYL-ARNVAALATGGRLVVIGmQGGRKAELDLGALLAKRASVAATALRS-RPLaekaeI-- 274
                   8**************9*******************8877.8888899888*******6666888888888888899999999985.555544443.. PP

                   HHH....HHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  88 dil....eelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                          e++  l+++G++rpvvdr++p++eaaeAhr++es++++GK+ l
    KIR64274.1 275 --VagvrEQVWPLVAAGAVRPVVDRRLPMAEAAEAHRLVESNAHVGKVLL 322
                   ..35555****************************************976 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   2.3   7.1e-27   3.2e-23       1     116 [.     151     265 ..     151     279 .. 0.92

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 7.1e-27
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgeeefd 98 
                 g+G++avql +alGa+v+++++ + k e ++ lGa+++i+y+e d+ve++++ t+g+g+dv+++  G  + l + +++l+ gGrlvv+G+ g+ + e+d
  KIR64274.1 151 GIGTFAVQLGAALGATVVVTARPA-KHERLRGLGATHAIDYREQDFVEEVRRVTDGRGADVILDIMG-ASYLARNVAALATGGRLVVIGMqGGRKAELD 247
                 8***************99998877.68**************555***********************.**********************8777788** PP

                 HHHHHHTT-EEEEE-SSC CS
  ADH_zinc_N  99 lrnlllkeksilGsllgs 116
                 l+ ll+k+ s+  + l s
  KIR64274.1 248 LGALLAKRASVAATALRS 265
                 ***********9988877 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   3.3e-12   1.5e-08       1      61 [.      27      87 ..      27      90 .. 0.96
   2 ?    0.8   0.0       0.1   4.5e+02      92     108 ..      91     107 ..      88     108 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 3.3e-12
                TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE CS
       ADH_N  1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvv 61
                pgev+++v+a+++++ Dl   +g+  ++  +p  +G E +G+v+++g +v +++vG++V++
  KIR64274.1 27 PGEVIVDVRASAVNRADLLQRQGHYPPPPGAPAYPGLECSGVVSAIGADVAGWEVGREVCA 87
                689*******************************************************986 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.1
                 -SSSBSEEEECGGGEEE CS
       ADH_N  92 dGgfaeyvvvpekklvk 108
                  Gg+ae+v vp+ +l+ 
  KIR64274.1  91 GGGYAERVAVPAGQLLA 107
                 69*********998875 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   1.4e-05     0.061       2      35 ..     142     175 ..     141     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrsee 35 
                 + lv G++sGIG   ++  a+ Ga+vvv++r ++
  KIR64274.1 142 TLLVHGGGSGIGTFAVQLGAALGATVVVTARPAK 175
                 6799************************998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2168.41
//
Query:       KIR64275.1  [L=159]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-18   66.6   0.5    2.1e-18   66.6   0.5    1.5  2  MerR-DNA-bind  MerR, DNA binding
    1.2e-16   60.5   0.1    1.9e-16   59.9   0.1    1.3  1  MerR_1         MerR HTH family regulatory protein
    2.4e-14   52.8   2.9    3.5e-14   52.3   1.5    1.9  2  MerR           MerR family regulatory protein
  ------ inclusion threshold ------
      0.015   15.4   0.1      0.038   14.2   0.1    1.6  1  AbiEi_4        Transcriptional regulator, AbiEi antitoxin
      0.023   14.7   0.1      0.074   13.1   0.1    1.9  2  HTH_3          Helix-turn-helix


Domain annotation for each model (and alignments):
>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1         5   1.8e+04       2       8 ..      25      31 ..      25      34 .. 0.78
   2 !   66.6   0.5   5.7e-22   2.1e-18       1      65 []      47     112 ..      47     112 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 5
                   HHHHHHH CS
  MerR-DNA-bind  2 eRLkfIr 8 
                   eRL +Ir
     KIR64275.1 25 ERLGLIR 31
                   6899998 PP

  == domain 2  score: 66.6 bits;  conditional E-value: 5.7e-22
                    HHHHHHHHHHHHTT--HHHHHHHH.HHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind   1 leRLkfIrrarrlGFsLdeIrelL.alyddrappcqdvrallarklaeleeriaeLqalraeLaal 65 
                    l+R++fIr  +++G sL+eIre L +l+++r+p+++d+ +l+a+++a+l e+i+ +++lr++L+++
     KIR64275.1  47 LRRVAFIRVSQQVGVSLEEIREALdSLPASRTPTAADWAELSAAWRARLSEKIRLMTKLRDDLDGC 112
                    79**********************99*************************************987 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.1   5.3e-20   1.9e-16       2      68 ..       6      72 ..       5      73 .. 0.98

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 5.3e-20
                EHHHHHHHHTS-HHHHHHHHHHTT-S-EE-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XXXX CS
      MerR_1  2 sigevakilgvtthtlrywekegllkpkrteggrryYtdedierLklikyLlkrGltlkgikkllns 68
                +ig++a ++gv ++ lry+e+ gl++  rt+g++r+Y +++++r+++i+  ++ G++l++i+++l+s
  KIR64275.1  6 TIGQLAARSGVAPSALRYYERLGLIRADRTGGNQRRYARTELRRVAFIRVSQQVGVSLEEIREALDS 72
                9***************************************************************997 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   1.5   9.8e-18   3.5e-14       1      38 []       6      42 ..       6      42 .. 0.99
   2 ?   -1.4   0.0      0.57     2e+03       5      12 ..      55      62 ..      54      67 .. 0.80

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 9.8e-18
                EHHHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSSEEE CS
        MerR  1 tIgevAeltGvsprtLRyYEreGLipppeRtegGyRlY 38
                tIg++A ++Gv p++LRyYEr GLi ++ Rt g++R+Y
  KIR64275.1  6 TIGQLAARSGVAPSALRYYERLGLI-RADRTGGNQRRY 42
                9************************.***********9 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.57
                HHHHHTTT CS
        MerR  5 vAeltGvs 12
                v++ +Gvs
  KIR64275.1 55 VSQQVGVS 62
                8999***9 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.1e-05     0.038      15      38 ..       6      30 ..       3      31 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
     AbiEi_4 15 ttrelea.aGispsalrrLvrkGwL 38
                t  +l+a +G+ psalr++ r G++
  KIR64275.1  6 TIGQLAArSGVAPSALRYYERLGLI 30
                889**999*************9987 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.1e-05     0.074       8      31 ..       3      26 ..       1      31 [. 0.92
   2 ?   -1.9   0.0         1   3.6e+03      49      54 ..      60      65 ..      53      71 .. 0.50

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.1e-05
                TTHHHHHHHHHHTSSHHHHHHHHT CS
       HTH_3  8 lglsqeeLAeklGvsrstisriEn 31
                  l++ +LA+++Gv +s+++ +E+
  KIR64275.1  3 ESLTIGQLAARSGVAPSALRYYER 26
                669999*****************8 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1
                TSEHHH CS
       HTH_3 49 gvslde 54
                gvsl+e
  KIR64275.1 60 GVSLEE 65
                333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1168.27
//
Query:       KIR64276.1  [L=235]
Description: glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-33  115.7   0.0    2.5e-33  115.3   0.0    1.2  1  Glycos_transf_2  Glycosyl transferase family 2
    1.6e-13   51.1   0.0    1.9e-13   50.8   0.0    1.1  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    2.4e-07   30.5   0.0    3.2e-07   30.1   0.0    1.1  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
    8.8e-06   26.2   0.1    1.5e-05   25.5   0.1    1.3  1  Glyco_tranf_2_4  Glycosyl transferase family 2
  ------ inclusion threshold ------
      0.016   14.7   0.0      0.032   13.7   0.0    1.5  2  Glyco_transf_21  Glycosyl transferase family 21


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.0   6.9e-37   2.5e-33       1     132 [.       4     133 ..       4     165 .. 0.91

  Alignments for each domain:
  == domain 1  score: 115.3 bits;  conditional E-value: 6.9e-37
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      s+ +p+yNee+ ++ +l+ +la d++ ++e++vvDDgS+D+t e+l ++   d r+rvi++ +n Gk++a+ +++++a g+y+++lDaD+e+dp
       KIR64276.1   4 SILMPVYNEEERIADALKQALAVDYPCEIELVVVDDGSRDGTGEVLGRA--DDARLRVITHQRNAGKGAAIKTAVDNAEGEYMVILDADLEYDP 95 
                      89***********************************************..58***************************************** PP

                      THHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS CS
  Glycos_transf_2  95 dwleklvealekdgadvvlgqrprifgetdeiernkrv 132
                      ++++kl+++  +++a vv+g+r + + + + ++   ++
       KIR64276.1  96 QDIPKLLDPVLDGRATVVYGNRTFGSHSAYSFWYVMGN 133
                      **********************9999888888877665 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   5.4e-17   1.9e-13       4     127 ..       3     120 ..       2     179 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 5.4e-17
  Glyco_tranf_2_3   4 lavlVptfneedvlgevlesllaqeypr.vevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDd 96 
                      l++l p++nee+++ + l ++la +yp  +e+vvv+d+s+++t ev+     + +d+r+rv++ +rn g   k  a++ a++++++++ +++D+
       KIR64276.1   3 LSILMPVYNEEERIADALKQALAVDYPCeIELVVVDDGSRDGTGEVLG----RADDARLRVITHQRNAG---KGAAIKTAVDNAEGEYMVILDA 89 
                      799***********************666****************995....67999*****9999866...777889**************** PP

  Glyco_tranf_2_3  97 DtvvePdtlkrllqffltpkvgavgtpvfll 127
                      D   +P  +++ll  +l+ ++++v++++ + 
       KIR64276.1  90 DLEYDPQDIPKLLDPVLDGRATVVYGNRTFG 120
                      ****************9999****9998664 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   8.8e-11   3.2e-07       1      95 [.       4      94 ..       4     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 8.8e-11
  Glyco_tranf_2_2  1 svviplraseerhyieervlqk.akyydeeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfis 95
                     s+++p++++eer  i + ++q  a  y  eiel+vvddgS + + e++    d++l+v   +  ++  +++aa    +++ae+++++ lDaD  + 
       KIR64276.1  4 SILMPVYNEEER--IADALKQAlAVDYPCEIELVVVDDGSRDGTGEVLGRADDARLRVI-TH--QRNAGKGAAIKTAVDNAEGEYMVILDADLEYD 94
                     6899********..*****7652667899*****************************8.44..4678************************6555 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1   4.1e-09   1.5e-05       1      81 [.      10      90 ..      10      93 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 4.1e-09
  Glyco_tranf_2_4  1 rneadiLpeflahhlalgf...drilvydndstDgtrailkelpevkllhvdksyederrqvellkallaryaeadwvlvvDaD 81
                     +ne++++   l+ +la+++    +++v+d++s+Dgt ++l + ++++l  ++++ +  + + +++k++ ++ ae+++++ +DaD
       KIR64276.1 10 YNEEERIADALKQALAVDYpceIELVVVDDGSRDGTGEVLGRADDARLRVITHQRN--AGKGAAIKTAVDN-AEGEYMVILDAD 90
                     699999999999999999754347******************99888777776543..4567777777766.69*********9 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.5   5.5e+03      66      83 ..       7      24 ..       2      29 .. 0.69
   2 ?   13.7   0.0   8.9e-06     0.032      18      91 ..      68     143 ..      54     155 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.5
  Glyco_transf_21 66 lpvgsdakglaaaleaaf 83
                     +pv+ +++ +a al++a+
       KIR64276.1  7 MPVYNEEERIADALKQAL 24
                     777788888877777665 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 8.9e-06
  Glyco_transf_21  18 KvnnllqaleaakydllvisDsdvrvkpdyLeellaaledpkvglVtslpv.gsdak.glaaaleaaflntlagvl 91 
                      K  ++ +a++ a+ +++vi+D+d   +p+ + +ll ++ d ++ +V +    gs+ + +++  + +  +++ a+vl
       KIR64276.1  68 KGAAIKTAVDNAEGEYMVILDADLEYDPQDIPKLLDPVLDGRATVVYGNRTfGSHSAySFWYVMGNKGVTMAANVL 143
                      66788999********************************888888775542333323677777666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1666.46
//
Query:       KIR64277.1  [L=205]
Description: hypothetical protein TK50_00720 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0087   15.9   4.2       0.17   11.7   0.1    2.4  2  Myosin_N  Myosin N-terminal SH3-like domain


Domain annotation for each model (and alignments):
>> Myosin_N  Myosin N-terminal SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   1.1    0.0015        26      22      38 ..     117     133 ..     112     135 .. 0.86
   2 !   11.7   0.1   9.5e-06      0.17      15      37 ..     137     159 ..     136     160 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0015
                 ESSEEEEEETTSEEEEE CS
    Myosin_N  22 eGdkvtVetedGktvtV 38 
                   ++v+V t+dG ++tV
  KIR64277.1 117 LHGEVVVGTKDGGKRTV 133
                 5689************9 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 9.5e-06
                 EEEEEEEESSEEEEEETTSEEEE CS
    Myosin_N  15 kGeIkeeeGdkvtVetedGktvt 37 
                 +Ge++ ++Gd+ tV+ +dG t+t
  KIR64277.1 137 RGEVTAIDGDSMTVKSTDGFTMT 159
                 69*****************8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 1825.83
//
Query:       KIR64278.1  [L=231]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-25   89.3   0.0    2.3e-25   88.9   0.0    1.2  1  Response_reg  Response regulator receiver domain
    1.5e-24   85.8   0.1    5.5e-24   84.0   0.0    1.9  2  Trans_reg_C   Transcriptional regulatory protein, C terminal
    0.00054   19.8   0.8       0.01   15.7   0.1    3.1  3  MarR_2        MarR family


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0   3.9e-29   2.3e-25       1     112 []      11     121 ..      11     121 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 3.9e-29
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vl+v+D+p+++el+r +l+++g+  v+  +dg++ l  +++ ++  ++lDi +pg+ G e+++++re  + +pv++lta+++e d++ +l++gadd+
    KIR64278.1  11 VLVVEDEPAIAELVRLYLTRDGF-GVHLERDGAAGLSAARRLRPVACVLDIALPGLAGTEICRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDY 106
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   ++Kpf+p+eL+++++
    KIR64278.1 107 VTKPFSPRELVARVR 121
                   ***********9985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.39   2.3e+03      49      71 ..     116     138 ..     114     141 .. 0.71
   2 !   84.0   0.0   9.3e-28   5.5e-24       1      76 [.     156     228 ..     156     229 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.39
                  HHHHHHHHHHTTTTSSSSEEEET CS
  Trans_reg_C  49 hisrLRkkLeddekkprlIetvr 71 
                   ++r+R  L+ ++  p+ +e  r
   KIR64278.1 116 LVARVRAVLRRTAGVPEGVERPR 138
                  68999999999766666666555 PP

  == domain 2  score: 84.0 bits;  conditional E-value: 9.3e-28
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYr 76 
                  ge+v+lt++ef+lL+ L+++pgrv++reeLl  vwg+  ++ +rtvdvh++++R kL+    +  +I+t+rgvGY 
   KIR64278.1 156 GEPVQLTSTEFDLLAHLMARPGRVFTREELLAGVWGYAAHSGTRTVDVHVAQVRAKLGG---AAGVIRTHRGVGYA 228
                  789********************************************************...345**********6 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.21   1.2e+03      18      31 ..      63      74 ..      60      75 .. 0.83
   2 ?   -0.3   0.0      0.17     1e+03       7      30 ..      80     119 ..      77     121 .. 0.70
   3 !   15.7   0.1   1.7e-06      0.01       2      44 ..     160     203 ..     159     207 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.21
                TTSEEEHHHHHHHH CS
      MarR_2 18 pgrdltvgelarrl 31
                pg  l+ +e++rrl
  KIR64278.1 63 PG--LAGTEICRRL 74
                66..8899****99 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.17
                 HHHHHHHHHCTTTS................EEEHHHHHHH CS
      MarR_2   7 qarvLaaLgrrpgr................dltvgelarr 30 
                 +  vL+  +r ++                 +++++el++r
  KIR64278.1  80 WTPVLFLTARDDEVdriiglelgaddyvtkPFSPRELVAR 119
                 5678888888887677777766667677777788888776 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 1.7e-06
                 T--HHHHHHHHHHHCTTTSEEEHHHHHH.HHTSSHHHHHHHHHH CS
      MarR_2   2 gltpaqarvLaaLgrrpgrdltvgelar.rlglsksavsrilkr 44 
                  lt +++++La+L +rpgr +t  el +  +g+  ++ +r+++ 
  KIR64278.1 160 QLTSTEFDLLAHLMARPGRVFTREELLAgVWGYAAHSGTRTVDV 203
                 589****************99*9999998999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1583.64
//
Query:       KIR64279.1  [L=169]
Description: hypothetical protein TK50_00735 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1335.98
//
Query:       KIR64280.1  [L=390]
Description: acetyl-CoA acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-68  228.6   0.3    1.1e-67  228.2   0.3    1.2  1  Thiolase_N     Thiolase, N-terminal domain
    1.2e-40  137.9   0.1    2.6e-40  136.9   0.1    1.6  1  Thiolase_C     Thiolase, C-terminal domain
    1.8e-05   24.5   1.1    4.5e-05   23.1   0.3    2.1  2  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
  ------ inclusion threshold ------
      0.051   13.4   0.6        2.4    8.1   0.1    2.5  2  ACP_syn_III    3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.2   0.3   2.4e-71   1.1e-67       2     258 ..       5     258 ..       4     260 .. 0.91

  Alignments for each domain:
  == domain 1  score: 228.2 bits;  conditional E-value: 2.4e-71
                 EEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCT.TSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHH CS
  Thiolase_N   2 vivsaartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqa.gegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsi 99 
                 viv+a+rtp+g+ +gsl+ +  ++L+a++l+al e++g+dp++vd+v++G+v q  ++ +n+ar+a+l+ag pe+vp +t++++c+S+ +a++ aa  +
  KIR64280.1   5 VIVGAVRTPVGRREGSLAAVHPVDLSAHVLRALAERTGIDPAQVDDVVWGCVSQVgEQSWNVARNAVLAAGWPESVPGTTLDRQCGSSQQALHFAAATV 103
                 9******************************************************667778************************************** PP

                 HTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTE.ETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTTB CS
  Thiolase_N 100 aageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgla.dafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkdei 197
                  +g+ad vvagGvEsm+++p+  s++   g+ + ++ +      +g a d       G+ ae +a+++ +sR ++defA++sh kaaaaq+ag+F+ e 
  KIR64280.1 104 LSGQADLVVAGGVESMTRVPMGSSVAG--GTPFSAQVRDRYRGVQGFAgDEPLPFNQGVGAELIAARWHFSRAQLDEFALASHVKAAAAQDAGAFDPEL 200
                 ***********************9555..4444444444444334443244556678****************************************** PP

                 E-EEEEESSSEEEE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEE CS
  Thiolase_N 198 vPvkvkgkkgkktvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllms 258
                  Pv + +      + +de+ir+++++ +L  lk+ F+ +G vtAg asqisDGaaa+ +++
  KIR64280.1 201 APVALADGG---KFAADEGIRRDTSLARLGGLKTPFRADGVVTAGSASQISDGAAALAVTT 258
                 *****9955...59******************************************98876 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.9   0.1   5.8e-44   2.6e-40       2     122 ..     268     388 ..     267     389 .. 0.99

  Alignments for each domain:
  == domain 1  score: 136.9 bits;  conditional E-value: 5.8e-44
                 --SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHHC CS
  Thiolase_C   2 kplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselkke 100
                 +pla++++  +++ dp ++ ++P++a+ k+l +agl +e+i ++E+nEAFa + La + + + d+e++N +GGaialGHPlGasGaRi++t+l++++ +
  KIR64280.1 268 RPLARVHTAVVAADDPVTMLTAPIPATAKALRRAGLGIEEIGVYEVNEAFAPVPLAWLAETEADPERLNPRGGAIALGHPLGASGARIMTTMLQHMRDN 366
                 799************************************************************************************************ PP

                 TTSEEEEEEEETTTEEEEEEEE CS
  Thiolase_C 101 ggklgvaalCigggqgvalvie 122
                 g ++g+ ++C ggg+++a+++e
  KIR64280.1 367 GIRYGLQTMCEGGGMANATIVE 388
                 ********************97 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.4   6.2e+03     194     208 ..       2      16 ..       2      20 .. 0.81
   2 !   23.1   0.3     1e-08   4.5e-05     169     206 ..      83     120 ..      79     145 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.4
                    -SEEEEEEEE---SH CS
  ketoacyl-synt 194 advalaGGvellltp 208
                    +d++++G+v ++++ 
     KIR64280.1   2 SDAVIVGAVRTPVGR 16 
                    5999***99988765 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 1e-08
                    EEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE--- CS
  ketoacyl-synt 169 vtvdtACsSslvavhaavqslrsgeadvalaGGvelll 206
                     t+d  C Ss  a+h a   + sg+ad+++aGGve ++
     KIR64280.1  83 TTLDRQCGSSQQALHFAAATVLSGQADLVVAGGVESMT 120
                    577889*****************************775 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   0.00053       2.4       5      39 ..      87     121 ..      84     123 .. 0.87
   2 ?    2.9   0.1     0.021        96      52      65 ..     247     260 ..     239     271 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00053
                  -GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGG CS
  ACP_syn_III   5 aaCsgfvyalsvAdaliesgaakrvLvigaetlsk 39 
                   +C +  +al+ A+a + sg+a  v+  g e +++
   KIR64280.1  87 RQCGSSQQALHFAAATVLSGQADLVVAGGVESMTR 121
                  58******************999888888888776 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.021
                  B-EEEEEEEEEEES CS
  ACP_syn_III  52 fGDGAgAvvlease 65 
                   +DGA+A+ +++se
   KIR64280.1 247 ISDGAAALAVTTSE 260
                  78********9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2683.15
//
Query:       KIR64281.1  [L=303]
Description: protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-33  116.1  13.8    1.4e-33  116.1  13.8    2.5  3  Rhomboid      Rhomboid family
     0.0011   19.1   7.0     0.0023   18.0   7.0    1.5  1  zf-B_box      B-box zinc finger
     0.0048   17.4   1.0     0.0048   17.4   1.0    2.1  2  DUF1751       Eukaryotic integral membrane protein (DUF1751)
  ------ inclusion threshold ------
          2    7.1   4.0        2.8    6.6   4.0    1.1  1  Dynactin_p62  Dynactin p62 family


Domain annotation for each model (and alignments):
>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.8       1.4   6.1e+03     112     123 ..      79      90 ..      62     111 .. 0.46
   2 !  116.1  13.8     3e-37   1.4e-33       3     147 ..     135     269 ..     133     272 .. 0.91
   3 !    4.7   0.7    0.0061        27      81     118 ..     261     298 ..     260     302 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.4
                 CCCCCHHHCTSS CS
    Rhomboid 112 llnlvlgllpra 123
                 +ln++l+ll+ a
  KIR64281.1  79 ALNVLLMLLSIA 90 
                 223332222222 PP

  == domain 2  score: 116.1 bits;  conditional E-value: 3e-37
                 GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S...-EESSHHHHHHHHHHHHHHHHCCCCGS---- CS
    Rhomboid   3 krgelwrlltsmflHagwlHllfNmlallvfGsplerrlGslrflllyllsglagsllsllfsaesesplvGaSGaifgllgallvlvprnrkllrkli 101
                 ++ge++rl+t+mflH g++Hll+Nm+al+v+G +le +lG lrfl+lyl++gl+g+++ +lfsae+ + ++GaS aifgl++al+v   r  + +    
  KIR64281.1 135 AQGEWYRLVTAMFLHYGIVHLLLNMWALWVLGRSLEANLGPLRFLALYLIAGLGGNVAAYLFSAEN-ATTAGASTAIFGLFAALIVIERRMGRDIS--- 229
                 689**************************************************************7.6****************998766555444... PP

                 HC...CCCCCCCCCCHHHCTSSSTTTHHHHHHHHHHHHHHHHHHCC CS
    Rhomboid 102 iallllllfillnlvlgllpraggvsnlAHlgGllaGlllgllllr 147
                      +l+++++nlv+ l+ +   +s  +HlgGl++G +++l+l  
  KIR64281.1 230 -S---VLPVLVINLVFTLTVPG--ISIPGHLGGLVTGGAMALVLAY 269
                 .3...6788*********9986..****************999865 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0061
                 HHHHHHHHHHHCCCCGS----HC...CCCCCCCCCCHH CS
    Rhomboid  81 gllgallvlvprnrkllrkliiallllllfillnlvlg 118
                 g ++++l+  pr+r++l+++ +a +ll+++++l +v  
  KIR64281.1 261 GAMALVLAYAPRSRRTLFQVAGAAVLLVALLALAVVRT 298
                 67999999***************777777777766654 PP

>> zf-B_box  B-box zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   7.0   5.2e-07    0.0023       4      30 ..       9      38 ..       6      51 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 5.2e-07
    zf-B_box  4 tkCpeHknkpatlfCedCqqplCeeC...s 30
                ++C +H+ +++   C+ C+ p+C++C    
  KIR64281.1  9 PVCYRHPGRETYVRCTRCDRPICPDCmrdA 38
                79************************5543 PP

>> DUF1751  Eukaryotic integral membrane protein (DUF1751)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.0   1.1e-06    0.0048       9      72 ..     140     203 ..     138     221 .. 0.87
   2 ?   -1.6   0.1      0.89     4e+03      65      94 ..     263     291 ..     252     295 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.1e-06
     DUF1751   9 wtlltasfveqnvwkvlvslltlllggkylErlWgskEllkFilvvnvitnllvvlltlllylv 72 
                 + l+ta+f    ++++l+++ +l+++g+ lE + g   +l   l+ +++ n+ ++l+    +++
  KIR64281.1 140 YRLVTAMFLHYGIVHLLLNMWALWVLGRSLEANLGPLRFLALYLIAGLGGNVAAYLFSAENATT 203
                 579**************************************************99987655555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.89
     DUF1751  65 ltlllylvtkseelllvpisGlagilagfl 94 
                 ++l+l+++ +s ++l  +++G+a +l+++l
  KIR64281.1 263 MALVLAYAPRSRRTL-FQVAGAAVLLVALL 291
                 566677777777745.78888887777765 PP

>> Dynactin_p62  Dynactin p62 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.0   0.00062       2.8       6      38 ..      21      53 ..      17      58 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00062
  Dynactin_p62  6 lyCedChqirCpRCvteeivtyyCPnCLFevps 38
                  + C  C +  Cp C+ +  v + CP+C+ e   
    KIR64281.1 21 VRCTRCDRPICPDCMRDASVGHQCPECVDEGRR 53
                  669************************988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       856  (0.0477439); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2193.01
//
Query:       KIR64282.1  [L=176]
Description: peptidylprolyl isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-44  151.0   0.0    3.5e-44  150.9   0.0    1.0  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   0.0   1.9e-48   3.5e-44       2     157 ..       7     170 ..       6     171 .. 0.91

  Alignments for each domain:
  == domain 1  score: 150.9 bits;  conditional E-value: 1.9e-48
  Pro_isomerase   2 vdietsskGrivieLfadkaPktvenFlklvkeg................fYdgttFhRvikgfmvqgGdptgktsageqekkggesiraipdEit 81 
                    ++++t+ +G+i +eLf+++aPktv+nF++l++ g                +Ydgt+ hRvi gfm+q Gdptg+++       gg   +++ dE++
     KIR64282.1   7 ATLHTN-AGPIRLELFPNHAPKTVRNFVDLAE-GnkeyidprtgqpgsgpYYDGTISHRVISGFMIQMGDPTGTGR-------GG-PGYKFGDEFH 92 
                    6899*7.************************5.55889999999999999***********************966.......33.236899**** PP

  Pro_isomerase  82 sklkh.krGalamartgkepnsagsqFfItlkeaphldgkytvFGkVv..eGmdvvekiekvetde.erpkknvkivsae 157
                    ++l++ ++++lama++g  p ++gsqFfIt++++phl++++t+FG+V    + +vv++i++++t   +rp ++v+i+++e
     KIR64282.1  93 PELRFdRPYLLAMANAG--PGTNGSQFFITVGPTPHLNNRHTIFGQVAdeASAKVVDSIANTPTGPsDRPLQDVVIERVE 170
                    77776599*******98..8****************************8889************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       178  (0.00992805); expected 358.6 (0.02)
Passed bias filter:                      166  (0.00925874); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1343.65
//
Query:       KIR64283.1  [L=244]
Description: hypothetical protein TK50_00765 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.047   13.6   7.7      0.034   14.0   6.2    1.5  2  Apolipoprotein   Apolipoprotein A1/A4/E domain
       0.15   11.8   0.6       0.31   10.8   0.6    1.5  1  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
       0.23   11.4   0.3       0.23   11.4   0.3    2.8  3  Gram_pos_anchor  LPXTG cell wall anchor motif


Domain annotation for each model (and alignments):
>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   6.2   5.6e-06     0.034      60     166 ..      25     130 ..      17     144 .. 0.84
   2 ?   -3.8   0.0       1.7     1e+04      52      63 ..     173     184 ..     171     188 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.6e-06
                     HHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..---..--S CS
  Apolipoprotein  60 vqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaeelrerlerhvealkarlapyveelrqklaerleelkeslaphaeeve..erl 152
                     ++++l+q +  lrq  + +++   + +  ++++++ ++a+ a  +r+r+++++ ++ a lap++  +r+   +++e+ ++ +a ++++    +++
      KIR64283.1  25 ARAELNQGIGHLRQAATYAAKGAGATVGPRVQAARGAVAPTALVVRDRASSGLASTVAALAPLALAVRN---AQAEAAGKAVAGKKAAAArqAAV 116
                     7999***********9999999999*******************************************9...89999999999887766633555 PP

                     SSHHHHHHHTS-TT CS
  Apolipoprotein 153 ssrveelrekleeq 166
                     s++v++ + k++++
      KIR64283.1 117 SRKVKAKSMKAKRK 130
                     66665555555444 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.7
                     HCCCCHHHHHHC CS
  Apolipoprotein  52 rlepyrdevqeq 63 
                      lep rdev + 
      KIR64283.1 173 TLEPARDEVDTL 184
                     477788887665 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6   5.2e-05      0.31      27     102 ..      11      89 ..       5     124 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.2e-05
  ATPgrasp_Ter  27 vlaavpRrKekgglq..elekd.eelielaerlaeefgldglvnvQvrededgpkLLEiNpRasGGlgysalaGvnlpy 102
                   ++  + RrK++g+l   el++   +l ++a+  a+  g+++   vQ  +++  p  L +  Ras+Gl  +++a + l+ 
    KIR64283.1  11 TVFGIVRRKTQGQLAraELNQGiGHLRQAATYAAKGAGATVGPRVQAARGAVAPTALVVRDRASSGLASTVAALAPLAL 89 
                   455578888889988555555325778899999999*******************************999988655543 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.15   8.7e+02      30      41 ..       9      20 ..       8      21 .. 0.82
   2 ?   -3.6   1.0       1.9   1.1e+04      27      32 ..      79      84 ..      75      91 .. 0.50
   3 ?   11.4   0.3   3.9e-05      0.23      17      41 ..     138     161 ..     136     164 .. 0.56

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.15
                     XXXXXXXXXXXX CS
  Gram_pos_anchor 30 ggllLlvkrRKk 41
                     gg+++++ rRK+
       KIR64283.1  9 GGTVFGIVRRKT 20
                     889999999996 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.9
                     XXXXXX CS
  Gram_pos_anchor 27 allggl 32
                      ++++l
       KIR64283.1 79 STVAAL 84
                     333333 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 3.9e-05
                      XXXXXXXXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor  17 nifltaaGllallggllLlvkrRKk 41 
                      + +l+aaG  a l+g++ l +rR++
       KIR64283.1 138 MVGLLAAGTVAGLAGAMAL-RRRRE 161
                      4567777755555555555.55554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1227  (0.0684366); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1793.47
//
Query:       KIR64284.1  [L=382]
Description: magnesium transporter CorA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-64  216.1   0.2    7.3e-64  215.9   0.2    1.0  1  CorA          CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
      0.019   15.1   0.1      0.033   14.3   0.1    1.3  1  Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)
       0.17   11.5   0.0        0.3   10.6   0.0    1.3  1  DUF4533       Protein of unknown function (DUF4533)


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.9   0.2   1.2e-67   7.3e-64       2     292 .]      84     378 ..      83     378 .. 0.98

  Alignments for each domain:
  == domain 1  score: 215.9 bits;  conditional E-value: 1.2e-67
        CorA   2 agfvWldlsspteeeleeLaeelgldelaledlldseerprvedyddylllvlpsveldkseeeeeev......plsillgdnflitvrreplealdev 94 
                  gfvW+ l  p+ +e++++a+++gl+ela ed+++ ++rp++e +++  +lvl+   + + +e +e++      ++ +++g+nf+i+vr+++  +l  v
  KIR64284.1  84 RGFVWIGLHEPELAEMTAIAATFGLHELAVEDAVKAQQRPKLERFGEVSFLVLRTARYCEHDELTENSevvetgQVMLFIGPNFVISVRHGDACRLAPV 182
                 589****************************************************9999999999999999**************************** PP

        CorA  95 ikrlk.deggkpkspgellyrlldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedke 192
                 +++l+ +++   + p  + y++ d++vd ++e+ ++le++ld le  ++d+++ + +++++q++r+lv+++ra+ p+++ l +l a     ++++e ++
  KIR64284.1 183 RADLEaKHDLLAHGPWAVAYAITDRVVDVYLEVADQLEDDLDVLEADVFDRQSSGRIQRIYQMKRELVEFKRAVVPLQRPLMTLTA-QVSREIPQEVRR 280
                 *****99999***********************************************************************66666.9999******** PP

        CorA 193 ylrdlldelerllemlealrerleslqdtyssllserlNrvmkvLTvltaiflPlTlitGiyGmNfkglPelewsygypfvlllglmallailllfwfk 291
                 y+rd++d+l+r +e+++++ ++l+s+ ++  ++++  +N+ m++++ ++ai   +T i+GiyGmNf+++Pel+  ygyp v  l+lm++++++l+ wf+
  KIR64284.1 281 YFRDVQDHLSRTVEQVNSYDDLLNSILQARLAQVTVDQNNDMRKIAAWAAIAAVWTAIAGIYGMNFENMPELKMTYGYPVV--LALMLAISLALYRWFR 377
                 ****************************************************889**************************..***************9 PP

        CorA 292 r 292
                 r
  KIR64284.1 378 R 378
                 8 PP

>> Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   5.5e-06     0.033      24      96 ..     236     310 ..     231     330 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.5e-06
                   XHHHHHHHHHHHHHHHHHHHHHH-SS-HHHHHHHHHHCS-TTHHHHHHHHHHHHH.S..TSS-HHHHHHHHHHHH CS
  Spore_III_AB  24 krrlkeleelkralellegeirygatpLpealeklaeksesplseffeevaerleek..egesfeeaweeavekl 96 
                   + r++++ ++kr l  +++ +   ++pL  + +++++++ ++++++f++v ++l++   + +s+ +++++ ++  
    KIR64284.1 236 SGRIQRIYQMKRELVEFKRAVVPLQRPLMTLTAQVSREIPQEVRRYFRDVQDHLSRTveQVNSYDDLLNSILQAR 310
                   6799*************************************************9984457777777777766665 PP

>> DUF4533  Protein of unknown function (DUF4533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.9e-05       0.3      10      54 ..     283     327 ..     276     334 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.9e-05
     DUF4533  10 ktlfdllkdlasatNtLielfnshlgtqilsiavkedsnikdnle 54 
                 +   d+l+  ++ +N+   l+ns l+++++ ++v ++  ++    
  KIR64284.1 283 RDVQDHLSRTVEQVNSYDDLLNSILQARLAQVTVDQNNDMRKIAA 327
                 56679*******************************999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       862  (0.0480785); expected 358.6 (0.02)
Passed bias filter:                      657  (0.0366445); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2737.22
//
Query:       KIR64285.1  [L=364]
Description: aminotransferase class I/II [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-34  120.2   0.0    1.2e-34  120.0   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    3.5e-18   65.6   0.1    1.7e-17   63.4   0.1    1.8  1  Aminotran_MocR   Alanine-glyoxylate amino-transferase
    2.4e-05   23.8   0.0      4e-05   23.0   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
       0.16   11.6   0.0       0.28   10.9   0.0    1.3  1  SKIP_SNW         SKIP/SNW domain


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.0   0.0   2.8e-38   1.2e-34      20     363 .]      24     355 ..       4     355 .. 0.88

  Alignments for each domain:
  == domain 1  score: 120.0 bits;  conditional E-value: 2.8e-38
                    HHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTS CS
  Aminotran_1_2  20 lpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsgg 115
                    l+++a ++ +  ++  +++ yg++ g+p l++ +a+ +g      ++++ +v+v++G+ ++++ l+  l + pgd ++v +pty+    +l+ +gg
     KIR64285.1  24 LKAAAVRAFD--ADPAGVTAYGTSVGYPPLRKWIADKHG------VEAD-QVLVTNGSLQADAFLFDHL-VRPGDSVVVERPTYDRTLLNLQRMGG 109
                    4444444444..7788899********************......8888.***************9999.99************************ PP

                    EEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTST CS
  Aminotran_1_2 116 evvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeep 211
                    ev+ + ++  +d +ld  +l ++l++      ++   ++ + +NP G+ ++l++ ++lldla +y++ lf D+ Ya+  f  +   +  + ++++ 
     KIR64285.1 110 EVHGVTVQ--PD-GLDTAELRKLLESGV---RPKLAHVIPNYQNPAGVTLSLDKRRELLDLAAEYGFTLFEDDPYADIRFRGEPLPS-MLSMDTRG 198
                    ******66..55.9***********944...33447899*****************************************9764444.89999999 PP

                    TEEEEEESSSTTSSGGG-EEEEEEEHHHH.HHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS..TEEEECCSC CS
  Aminotran_1_2 212 nllivgslsKafGlaGeRvGyilgnaavv.sqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael..glkvlasqs 304
                     ++ ++s+ K   ++G RvGy++g a+++ + ++k+ + ++s+  +++a++     + ++ +++e+    l +r+++l ++L++   +  ++++++
     KIR64285.1 199 VVVHASSFTKT-VCPGVRVGYLVGPADLIgDIAKKATSLYISPGMVSEAIVHQFCVSGDITRSIEKVSTALGERARVLAESLRRHipEARFVEPDG 293
                    99********8.59**********887772556666666666****************************************999*********** PP

                    SSEEEEEETHH.CHHHHHHHHHHTCTEEEEEGGGGTS...TTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 305 gmflltdlsae.takelskkLleevgvyvtpgtsftv...pgrlRitvAglteeeleelveal 363
                    g+fl+++l++    + l+ + +e+ gv+v++g+ f v   +  lR+ ++++t++ ++e v++l
     KIR64285.1 294 GYFLWVELPEDvLVDRLAPAAAER-GVAVVKGSDFVVdggQHALRLAFSAVTADRIDEGVRRL 355
                    *********997777788888899.***************99****************99987 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.1   3.7e-21   1.7e-17      30     402 ..      10     352 ..       5     362 .. 0.77

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 3.7e-21
                     ------HHHHHGGGGGGGS--CCC-EE.TTEETTSSS-TT--HHHHHHHHHHTTS-GGGEEE-SS-HHHHHHHHHHHHHHC--TT-SS-GGGG.- CS
  Aminotran_MocR  30 trGkpadedldlsnallallGeedlraadGtdlrnyGGlaGlpelralfaelldvkaenvlvqnnsslelqglvltlallhGvrdsegpwvkeek 124
                      rG p+ + +d+     a + +     ad + +  yG   G p lr   a+  +v+a++vlv+n s   lq ++  +   h vr ++        
      KIR64285.1  10 ARGAPSLDIVDVEGLKAAAVRAF---DADPAGVTAYGTSVGYPPLRKWIADKHGVEADQVLVTNGS---LQADAFLF--DHLVRPGDS------- 89 
                     56666666666543333333332...357788999***************************8765...45555444..466766654....... PP

                     -EEEEEES--HHHHHHHHHHT-EEEEEEEETTEE-HHHHHHHHHC-TTEEEEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-TTSS- CS
  Aminotran_MocR 125 vkllvtvpGydrhfllleelGielltvdlqddGpdvdaveklvaedasvkGilavpkysnptGetiseevarrlaalkaaapdfrifaddayavh 219
                       ++v  p ydr +l l+++G e+  v +q+dG d + ++kl  +    k   ++p+y np+G t+s ++ r+l  l aa   f++f dd ya  
      KIR64285.1  90 --VVVERPTYDRTLLNLQRMGGEVHGVTVQPDGLDTAELRKLLESGVRPKLAHVIPNYQNPAGVTLSLDKRRELLDL-AAEYGFTLFEDDPYADI 181
                     ..56667********************************************************************99.56789*********977 PP

                     BS.SSSS----HHHHHHHHT-TTSEEEEEES.TTTS-TTSS-EEEEE-HHHHHHHHHHHHHC-S---HHHHHHHHHHHHHSTHHHHHHHHHHHHH CS
  Aminotran_MocR 220 dlvaeedkdanivalardaGhpdrafvlast.skitfaGaGvafvassedniawlkkylGlqsiGpdkveqlrhvkflkdyeGlealmrdhaeli 313
                      +   ++  + ++++    G     +v as+ +k    G  v+++   +d i+++ k      i p  v ++   +f    +  ++   + +  +
      KIR64285.1 182 RF--RGEPLPSMLSMDTR-G----VVVHASSfTKTVCPGVRVGYLVGPADLIGDIAKKATSLYISPGMVSEAIVHQFCVSGDITRSI-EKVSTAL 268
                     77..66677777765332.2....34555442688889********************************99988888776655554.4445555 PP

                     HHHHHHHHHHHHHHHTTTSSEEE---SBSS-EEEEESSS-.HHHHHHHHHHCTEE---TTTTSSTT--SSS-EEEE--SSS-HHHHHHHH CS
  Aminotran_MocR 314 apkfeavlevleaelggaevatwteprGGyfisldtldgv.akrvvklaeeaGvsltaaGatypaGedpkdrnirlaptlppleevetam 402
                       + + + e l++++     a + ep GGyf+ ++  + v  +r    a e Gv++   G+ +    d  ++ +rla +  + +++++ +
      KIR64285.1 269 GERARVLAESLRRHIP---EARFVEPDGGYFLWVELPEDVlVDRLAPAAAERGVAVVK-GSDFVV--DGGQHALRLAFSAVTADRIDEGV 352
                     6677777788888776...57789**********997665279999999999999875.555543..44556677776666666665555 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   8.9e-09     4e-05      22     167 ..      36     175 ..      22     176 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 8.9e-09
                      ----CCCT--HHHHHHHHHHHHHTT-SE.EEEES-HH.HHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHC.C--EEEEE-EBTTTBE-HH CS
  Beta_elim_lyase  22 mlGdesYgedktvnrLedavaelfgkea.alfvpqGt.aAnsillkillqrgeevivtepahihfdetgaiael.agvklrdlknkeaGkmdle 112
                       +G  +Yg++ ++  L + +a+  g ea ++ v++G  +A+++l+  l+++g++v+v++p  ++ ++  +++ + ++v+ ++++ +    +d +
       KIR64285.1  36 PAGVTAYGTSVGYPPLRKWIADKHGVEAdQVLVTNGSlQADAFLFDHLVRPGDSVVVERP--TYDRTLLNLQRMgGEVHGVTVQPDG---LDTA 124
                      578889********************9725689999857********************9..689999***9995556666666666...**** PP

                      HHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 113 kleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                      +l+++++  g  ++k + ++    n +  G  +sl++ re+ ++a +yg +l+ D
       KIR64285.1 125 ELRKLLES-GV-RPKLAHVIPNYQNPA--GVTLSLDKRRELLDLAAEYGFTLFED 175
                      ********.44.488888877777775..********************998766 PP

>> SKIP_SNW  SKIP/SNW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.2e-05      0.28      74      92 ..     140     158 ..     135     166 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.2e-05
    SKIP_SNW  74 paiSnwkNpkGytipLdkR 92 
                  +i n++Np G t++LdkR
  KIR64285.1 140 HVIPNYQNPAGVTLSLDKR 158
                 6799**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2360.16
//
Query:       KIR64286.1  [L=276]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-28  100.4   0.1      2e-28   99.7   0.1    1.3  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.1   1.1e-32     2e-28      40     255 ..      39     256 ..      12     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 1.1e-32
                 HHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCC...........CT.SSSSSEEEEEEEEETHHHHHH.T-SG-EEEEEEEE.....TTEEEEE CS
  Inositol_P  40 edlvtaadeaveelilealaekfpshkilgeetlakge...........kseltedgltwivDPiDGTknFvr.gipqvaVsigllv.....egkpvlG 121
                 + l  a d+++++l+ +ala+ +p +++l+ee+ ++             +++lt+d ++wi+DP+DGT++F + g + +aV+++l       +g  v+G
  KIR64286.1  39 KALKDAGDKVSHDLMSTALARWRPADAVLSEEQADSRRawaddpsagdrPTRLTAD-RVWIIDPLDGTREFSEsGRDDWAVHVALWQrsagpDGALVAG 136
                 44666779****************************99******************.**************97355***********999999****** PP

                 EEEETTTTEEECEETTTEEEETCEEEEECTTSEGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCHEEEBESSHHHHHHHHHHTSTSEEEEEC.EBHH CS
  Inositol_P 122 viaqPllgqlysaakgkGaflngeklplsrappiseallvtlfavssrkdtseasllekvesavsaegvrsvgssalklaavaeGkadaylefgrekkW 220
                 ++++P      ++ +g   +l +   ++  ap  ++ l+++   vs+ + +    + e ve++ +++  + +gs+++k++av++G++day+++g  ++W
  KIR64286.1 137 AVGMP----ARTGPDGTPLVLGN---RVPAAPAVDGPLRIA---VSRSRPPAF--VSELVEGIGARA--VPMGSAGVKVCAVVTGEVDAYVHAGGQYEW 221
                 *****....66899999998888...777777777777755...444443333..668888888888..788*********************99**** PP

                 HHHHHHHHHHHTTEEEEESSSCSSSTTSSEEEEES CS
  Inositol_P 221 DhAAGeaileeaGGvvtdakgegrlllargiiaan 255
                 D AA++a+   aG     ++g+++ ++  ++  ++
  KIR64286.1 222 DSAAPVAVALGAGMHASRIDGSPLRYNRDDPRLPD 256
                 **********************7777665554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      160  (0.00892409); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2023.16
//
Query:       KIR64287.1  [L=198]
Description: glycosyl transferase family 28 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-16   59.0   0.0    5.9e-16   58.9   0.0    1.2  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom


Domain annotation for each model (and alignments):
>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   3.3e-20   5.9e-16      63     148 ..      73     158 ..      17     179 .. 0.81

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 3.3e-20
                      SSSHHHHHHHH-EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHH.HHHHHSSEEEE-STTCHHHHHHHHCCS---S CS
  Glyco_tran_28_C  63 idkmaeaikaadLvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelek.agaalvleqkeltpekLeeallelaaeklrl 148
                      +d+++ a+ +adLv++++G  ti E+ ++g   I+vp +   ++h dn+++ +++  gaa +++  e+ + +L+eal++ +a++l+ 
       KIR64287.1  73 HDELQRAMTEADLVVCHGGPATITEARRHGHLPIVVPRDPTRDEHVDNHQQLFARrLGAAGMVKLVEA-EADLVEALDKGVADPLTY 158
                      6889**************************************************94555555555566.**********99999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1399.32
//
Query:       KIR64288.1  [L=154]
Description: polysaccharide biosynthesis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-08   34.9   0.0    1.7e-07   31.4   0.0    2.0  2  Alg14            Oligosaccharide biosynthesis protein Alg14 l
     0.0032   17.5   0.3      0.075   13.1   0.0    2.1  2  Glyco_transf_28  Glycosyltransferase family 28 N-terminal dom


Domain annotation for each model (and alignments):
>> Alg14  Oligosaccharide biosynthesis protein Alg14 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.029   2.6e+02       3      21 ..      10      28 ..       8      47 .. 0.71
   2 !   31.4   0.0   1.8e-11   1.7e-07      79     174 ..      66     152 ..      54     153 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.029
       Alg14  3 vvlGSGGHTaEmlrllkkl 21
                +v  SGGH a ++ l   +
  KIR64288.1 10 LVGSSGGHLAQLVALAPWY 28
                44447****9999887666 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 1.8e-11
       Alg14  79 tllsllsaillvlrekrlpdvilvNGPgtcvpvvlaalllkllallkrskivyvEslarvktlSLsGklllplaDrfvVqwpeLekkykkaeyvgl 174
                   + l+ a+++++     +  +++ G g+++p+v++a+l+ +        +vy+E + r+ t  Ls++l  p+   ++Vqw+e ++ y+ka+ vg 
  KIR64288.1  66 LARNLWLAVRVFQGRD--VAAVVTTGAGVALPFVIVARLRGI-------PTVYIEVYDRIDTPTLSARLCRPFLSAMLVQWEEQRRLYPKATVVGN 152
                 4556667777666555..7889999********999988654.......579***************************************99986 PP

>> Glyco_transf_28  Glycosyltransferase family 28 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.015   1.3e+02       2      20 ..       8      26 ..       8      34 .. 0.87
   2 !   13.1   0.0   8.4e-06     0.075      67     119 ..      60     112 ..      44     134 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.015
                     EEEE-SSHHHHHHHHHHHH CS
  Glyco_transf_28  2 vllggGTgGhvfPalAlak 20
                     v+l+g +gGh+   +Ala 
       KIR64288.1  8 VMLVGSSGGHLAQLVALAP 26
                     688999**********995 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 8.4e-06
                      HCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHCCCCCHCCCTTHCCCCCH CS
  Glyco_transf_28  67 lkeilkvlkavvkakkilkeakpdavvgtggyvslpaviaaplaripviihEq 119
                       ++++++++ +  a ++++    +avv+tg  v+lp vi a+l++ip++  E 
       KIR64288.1  60 TRNLKNLARNLWLAVRVFQGRDVAAVVTTGAGVALPFVIVARLRGIPTVYIEV 112
                      4566666677889999********************************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1122.93
//
Query:       KIR64289.1  [L=308]
Description: hypothetical protein TK50_00815 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2134.75
//
Query:       KIR64290.1  [L=642]
Description: lipopolysaccharide biosynthesis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00011   22.4   0.1    0.00024   21.4   0.1    1.6  1  Wzz          Chain length determinant protein
    0.00024   21.0   0.1     0.0024   17.8   0.0    2.4  2  GNVR         G-rich domain on putative tyrosine kinase
     0.0067   16.8   2.4     0.0067   16.8   2.4    2.0  2  DUF4140      N-terminal domain of unknown function (DUF4140)
  ------ inclusion threshold ------
      0.026   14.7   0.2      0.048   13.9   0.2    1.3  1  TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
       0.72    9.9   5.4       0.19   11.8   1.0    2.3  2  TPPK_C       Thiamine pyrophosphokinase C terminal


Domain annotation for each model (and alignments):
>> Wzz  Chain length determinant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   6.6e-08   0.00024       7      78 ..      19      95 ..      16     109 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6.6e-08
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EEEEEEEES--CHHHHH.HHHHCC.....HHHHHHHHHHHHHHH CS
         Wzz  7 eLlsvLwkrkklIilvtllfallaviyaflatpkYtataqilvpekkqvea.ssltaq.....dvqanlqlasteiei 78
                  l+ L++r++++++ +ll+a ++++++ ++t +Y +t+ +lv +    +a ++  ++     +v + l +a+  + +
  KIR64290.1 19 TYLEWLRRRWWILVVAALLGAGAGMLVSQVQTRTYVSTTSLLVRQVGP-DAnPGAKVNldteaQVVRSLVVAERAQAL 95
                56778999***99******************************99876.33355444455644444444444444445 PP

>> GNVR  G-rich domain on putative tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       0.2   7.3e+02      59      77 ..      28      46 ..      25      51 .. 0.81
   2 !   17.8   0.0   6.7e-07    0.0024      42      79 ..     223     260 ..     194     263 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.2
        GNVR 59 alivvlalllGlllgvalv 77
                  i+v+a+llG+ +g+++ 
  KIR64290.1 28 WWILVVAALLGAGAGMLVS 46
                5799*********999876 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 6.7e-07
        GNVR  42 rivDeavvpekpvkPkkalivvlalllGlllgvalvll 79 
                 +i+ +a  p kp++P+ +l ++ +l +Gll+g++++l+
  KIR64290.1 223 EIISDAPLPRKPSSPNTTLNLASGLGAGLLFGIVVALV 260
                 59*********************************997 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   2.4   1.9e-06    0.0067       6      90 ..      78     182 ..      75     184 .. 0.78
   2 ?   -1.6   0.1       1.1   3.8e+03      76      95 ..     192     211 ..     187     214 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.9e-06
     DUF4140   6 drAevtreikvelkaGtnevtiegLpptldedSlrVegagaatildvqvervpnreaeee......................elkalraeleeledela 82 
                 + A+v+r++ v+  +  + +  ++Lp++   +Sl V+ + + ++l++++e    + a++                       e  al+++++e +++la
  KIR64290.1  78 TEAQVVRSLVVA--ERAQALLKTDLPAEDLVRSLSVTVPPNSQVLQIAFEAASPEAAQAGshsfaqayldlrlatatrslenETTALKQQITETNKQLA 174
                 579******994..555778889***************************977666666699************9666666556666666666666666 PP

     DUF4140  83 aledelaa 90 
                 a+  ++aa
  KIR64290.1 175 AVAGKIAA 182
                 66555554 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
     DUF4140  76 eledelaaledelaaaearl 95 
                 ++e++++ l+++la++++rl
  KIR64290.1 192 RAEADRNVLTNQLASLNSRL 211
                 45666666666666666665 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   1.4e-05     0.048      16      84 ..     147     215 ..     133     218 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
  TMF_TATA_bd  16 rlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlL 84 
                  rl ++ r+lE+E ++lk+++++ +++  +++  i++   ++ e ++++++ + l+++l++l++r++ lL
   KIR64290.1 147 RLATATRSLENETTALKQQITETNKQLAAVAGKIAAAPPNSVERARAEADRNVLTNQLASLNSRLSPLL 215
                  789999********************************9999999999999*************99887 PP

>> TPPK_C  Thiamine pyrophosphokinase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.0   5.4e-05      0.19      15      49 ..      27      62 ..      25      64 .. 0.86
   2 ?   -1.5   0.2      0.73   2.6e+03      21      33 ..     249     261 ..     246     263 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.4e-05
      TPPK_C 15 allllvlAaLvAvavallvsp.agqsfldllidtwn 49
                 ++ lv+AaL+++++ +lvs+  +++++   ++ ++
  KIR64290.1 27 RWWILVVAALLGAGAGMLVSQvQTRTYVSTTSLLVR 62
                59*******************888899988877665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.73
      TPPK_C  21 lAaLvAvavallv 33 
                 ++ L++++val++
  KIR64290.1 249 AGLLFGIVVALVL 261
                 6789999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 4391.73
//
Query:       KIR64291.1  [L=330]
Description: hypothetical protein TK50_00825 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-12   48.0   0.0    1.9e-12   47.5   0.0    1.2  1  DUF3048    Protein of unknown function (DUF3048) N-terminal d
    9.3e-07   29.2   0.0    1.9e-06   28.3   0.0    1.5  1  DUF3048_C  Protein of unknown function (DUF3048) C-terminal d


Domain annotation for each model (and alignments):
>> DUF3048  Protein of unknown function (DUF3048) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   2.2e-16   1.9e-12       1     111 [.      55     161 ..      55     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 2.2e-16
                 TT--.B--GGGGGB--EEEEE--SGGG-S-BSTTS-SEEEEEE-STT-EEEEEEESS.S--SEEB-B--B-HHHHHHHHTTT-EEEES-B-HHHHHHHH CS
     DUF3048   1 lTGepavdeekankrpvaVmienskaarpqsGlskAdivyEalveggiTRlmavyesekdpekiGpvRSaRpyyielaeefdailvhsGgsekaldllk 99 
                 l+G+p v ee a +++v+V +  ++   p +Gl++Ad+vy + +e +   l avy+s +d++k+Gpv  +Rp++i+ +  ++ ++ ++Gg++  l++++
  KIR64291.1  55 LSGKP-VAEEVAGRQAVVVPVRVTPGTSP-VGLAEADVVYQEFAESESLHLTAVYQS-RDAAKVGPVAEIRPVDIRTVGVLHPFVGYAGGPTGFLNQFA 150
                 67996.89999999999999999988776.8*************************6.99********************************9999999 PP

                 TTSS.-EEEH.. CS
     DUF3048 100 kdakldnldgle 111
                 + a+l+ ++ ++
  KIR64291.1 151 A-AELKGVTPTQ 161
                 8.4666666644 PP

>> DUF3048_C  Protein of unknown function (DUF3048) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   2.1e-10   1.9e-06      37     111 .]     239     318 ..     212     318 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 2.1e-10
                 SB--BSEEEEEE-..EEE.....SS-.-EEEE-SS-EEEEEEETTEEEEEEEEE..ETTEEEEE.ETTEE--B-SS-EEE CS
   DUF3048_C  37 eqlavkNvivleveveek.....degsrleidltgsgegyvftnGkaieitWskesedgptkyydedGkeiklnpGktwi 111
                   ++v+ v+vl +e+++      +  s +  +++gsg+++v+++    +++Wsk++++  + ++de G +++ +pG  w+
  KIR64291.1 239 VTVSVASVVVLTMEYRTLtvrkpSPRSLPGANVYGSGAALVVSGPSSAKAQWSKPGQKLVCNVTDEGGFQVRPQPGPAWV 318
                 4589999****9988554665544454779***********************************88************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2484.49
//
Query:       KIR64292.1  [L=286]
Description: sulfotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-14   55.0   0.3    1.6e-06   28.7   0.1    3.0  2  Sulfotransfer_3  Sulfotransferase family
      3e-14   53.2   0.0    4.1e-14   52.7   0.0    1.2  1  Sulfotransfer_1  Sulfotransferase domain
     0.0018   18.1   0.0     0.0029   17.5   0.0    1.3  1  Sulfotransfer_4  Sulfotransferase domain
  ------ inclusion threshold ------
       0.04   13.3   0.0      0.058   12.8   0.0    1.2  1  SRPRB            Signal recognition particle receptor beta su


Domain annotation for each model (and alignments):
>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.3e-08    0.0001       1      34 [.      30      68 ..      30      96 .. 0.74
   2 !   28.7   0.1   3.5e-10   1.6e-06     112     217 .]     111     241 ..      70     241 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.3e-08
                     -.EEEE--TTSSHHHHHHHHHTSTT....EE--S--.-- CS
  Sulfotransfer_3  1 P.ifivGlpRSGTTlLhrlLaahpd....vripeetlfv 34
                     P + ivG++R GTT L + L++hp+    v++++ ++f+
       KIR64292.1 30 PdFLIVGAQRCGTTSLFKTLSQHPAvlpaVYHKGVHYFD 68
                     5589*********************77666666666544 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 3.5e-10
                      GGG-HHHHHHHBSSEEEEEEE--H.HHHHHHHHHTT-..-------......--..-.HHHHHHHHHHHHHHHHHHHHHH.............. CS
  Sulfotransfer_3 112 hlfrldlllelfPdAkfihlvRdpvdtvlssyvslfg..kkresys......edsld.eledaleewarayerllaarar.............. 182
                      h  + +++++ +P  ++++l+Rdpv++++s+ ++ ++  ++ e ++      +++++ e e+ l++ + + + +++   +              
       KIR64292.1 111 HPLAGERIAKDLPGVRLLVLLRDPVERAYSAHTHEAArgFESEGFEraleleQERIAgERERLLADPTAHSHHFQH---Nayltrgqyveqler 201
                      33456899***********************988554014455555777777555555555555554443333332...122245667778888 PP

                      ....S-TTSEEEEEHHHHHH-HHHHHHHHHHHHT--.--G CS
  Sulfotransfer_3 183 ....lppdrfldvrYedLvadpegtlrriyeflglp.wdd 217
                          ++ dr++ ++ +d+ a+p+    ++++flglp w d
       KIR64292.1 202 lesiFGRDRLHVIDADDFFAEPRPAFDAVCDFLGLPhWAD 241
                      9999********************************8876 PP

>> Sulfotransfer_1  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   9.3e-18   4.1e-14       2     210 ..      30     242 ..      29     255 .. 0.82

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 9.3e-18
                      TSEEEEESTTSSHHHHHHHHHHHHTTTCCHHHTSSGHCT-HHHSCBTTHECCTSG.CCGTTECCCHHHTTTEEHHHHHHHSTSS.EEEE...GG CS
  Sulfotransfer_1   2 ddvlivtypKSGTtwlqellslitsegdfekaeepalfnardrspfLelydlyfp.nslkppdhlrsyshvaekvvrlralesprllktHlplk 94 
                      +d+liv+ +++GTt l + ls+++ +  +   + +++f+   + +++++y  +fp  ++ +        + +++v+ +   +sp  +    pl+
       KIR64292.1  30 PDFLIVGAQRCGTTSLFKTLSQHPAVLPAVYHKGVHYFDT-GYDRGMDWYLGHFPtVRRAEA------VRAQVGVRGVTGESSPYYMFH--PLA 114
                      79***************************99******999.88899****999996665555......567788888888888887763..455 PP

                      GS.CHHHHTT-EEEEEE--HHHHHHHHHHHHHHBT.......................TSTTT-S-HHHHHHHHHTTHSTTC-HHHHHHHHHHH CS
  Sulfotransfer_1  95 llpkslldsnlKiiylvRnpkdvavSryhfsrslk.......................klkepetpfeeffdlflegrvvcgsyfdhvkswlkl 165
                      + + +   + +++++l+R+p ++a+S  ++ ++ +                        l +p++      + +++  ++ g+y++++++  + 
       KIR64292.1 115 GERIAKDLPGVRLLVLLRDPVERAYSAHTHEAARGfesegferaleleqeriagererLLADPTA---HSHHFQHNAYLTRGQYVEQLERLESI 205
                      5555555899*********************9988888888877766666655555543333333...3445567799**************** PP

                      TTTTTEEEEEHHHHHHHHHHHHHHHHHHTT--..HHHHHHHHHHT CS
  Sulfotransfer_1 166 rkkgnvlflrYEdlkkdpakeikkiaeFlGiplteeelekivkhl 210
                      + ++++++++ +d +++p+     +++FlG+p        +++++
       KIR64292.1 206 FGRDRLHVIDADDFFAEPRPAFDAVCDFLGLP--------HWADI 242
                      ********************************........55555 PP

>> Sulfotransfer_4  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   6.4e-07    0.0029       3     213 ..      33     251 ..      31     253 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6.4e-07
  Sulfotransfer_4   3 iglGlpRtGTkSlkaALei..Lgykpvyhmeeviengsdlkewaealeakkegk....kpitredfdkllggydavvdvpaalfaeelleayPd 90 
                      +++G  R+GT+Sl + L +    +  vyh    + ++   ++ ++++ ++++      +  ++  ++ ++g+ +   +++  l  e +++  P 
       KIR64292.1  33 LIVGAQRCGTTSLFKTLSQhpAVLPAVYHKGVHYFDT-GYDRGMDWYLGHFPTVrraeAVRAQVGVRGVTGESSPYYMFHP-LAGERIAKDLPG 124
                      789***************9663555677765555554.3444555555555533443367777888888899898888888.99********** PP

  Sulfotransfer_4  91 akvIlteRdpekWlksmkktllalrsetlsrllalldpllellaklvellralvrrlfgag.sdaedeeaakeayeehnervrevvpaerlLvy 183
                       + ++  Rdp + + s +++  ++ + + s  ++++ +l+  ++++    ++l+ + + ++   +++   ++  y e  er+++++ ++rl+v+
       KIR64292.1 125 VRLLVLLRDPVERAYSAHTH--EAARGFESEGFERALELE--QERIAGERERLLADPTAHShHFQHNAYLTRGQYVEQLERLESIFGRDRLHVI 214
                      ********887655554443..333334444455544433..4688888888888888888667788889999********************* PP

  Sulfotransfer_4 184 kvkd.......GWepLceFLgkpvPdevpFPrvndge 213
                      +  d        ++  c+FLg p   ++ F + n ++
       KIR64292.1 215 DADDffaeprpAFDAVCDFLGLPHWADISFGKHNARS 251
                      ***977666666999*******998889999999876 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.3e-05     0.058       4      26 ..      30      52 ..      27      86 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
                -EEEEE-STTSSHHHHHHHHHHS CS
       SRPRB  4 pavllvGlsdsGKTslftrLttd 26
                p +l+vG + +G Tslf+ L++ 
  KIR64292.1 30 PDFLIVGAQRCGTTSLFKTLSQH 52
                789*****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2146.66
//
Query:       KIR64293.1  [L=671]
Description: hypothetical protein TK50_00855 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-08   35.0  20.1      0.021   15.1   0.7    7.7  7  DUF5122   Domain of unknown function (DUF5122) beta-propeller
      0.002   18.0   1.3      0.079   12.9   0.4    3.2  3  PD40      WD40-like Beta Propeller Repeat
  ------ inclusion threshold ------
      0.062   14.2   2.4        6.3    7.8   0.0    4.6  5  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> DUF5122  Domain of unknown function (DUF5122) beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.2   0.00032       1.9       5      25 ..      66      87 ..      65      87 .. 0.92
   2 !   15.1   0.7   3.4e-06     0.021       4      36 .]     122     155 ..     122     155 .. 0.93
   3 !    6.0   0.1    0.0025        15       5      28 ..     173     196 ..     173     203 .. 0.83
   4 !    7.3   0.0   0.00097       5.8       6      27 ..     239     260 ..     234     262 .. 0.89
   5 ?    3.4   0.0     0.016        95       2      29 ..     296     324 ..     295     326 .. 0.89
   6 ?   -0.7   0.1       0.3   1.8e+03       6      20 ..     353     367 ..     353     369 .. 0.78
   7 ?    1.4   0.1     0.066     4e+02       4      16 ..     455     468 ..     455     473 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00032
     DUF5122  5 KIlVaGsftsy.ngssdfalvR 25
                K++V+Gsft++ n +sd  ++R
  KIR64293.1 66 KVIVGGSFTQVkNRNSDVTIAR 87
                99*******8899999999998 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 3.4e-06
     DUF5122   4 GKIlVaGsftsyngssdfalvRLna.DGslDtsF 36 
                 G +++aG+f+++ng ++  l+ Ln  DGs+ tsF
  KIR64293.1 122 GTVYLAGKFNTVNGTNRRKLALLNLaDGSVVTSF 155
                 7899*************************97777 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0025
     DUF5122   5 KIlVaGsftsyngssdfalvRLna 28 
                 ++lV+G ft+ ++ ++++l+ L+a
  KIR64293.1 173 RLLVGGIFTTAATKPRNGLASLDA 196
                 589******99*******997776 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.00097
     DUF5122   6 IlVaGsftsyngssdfalvRLn 27 
                 ++V G+f + +g+    +vR+n
  KIR64293.1 239 LVVIGNFKKADGVLHDQVVRIN 260
                 6********************9 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.016
     DUF5122   2 pDGKIlVaGsft.syngssdfalvRLnaD 29 
                 pDG+ +V  s++  y+g  + a +R+ + 
  KIR64293.1 296 PDGSYFVIVSTGaPYAGTLCDAAARFETS 324
                 9****9999999899**********9986 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 0.3
     DUF5122   6 IlVaGsftsyngssd 20 
                 I+V+G f + n+ s+
  KIR64293.1 353 IYVGGHFRWLNNTSA 367
                 89*****98776665 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.066
     DUF5122   4 GKIlVaGsft.syn 16 
                 GK+++aG ++ s+n
  KIR64293.1 455 GKVYLAGFSSgSVN 468
                 9*******994444 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.039   2.3e+02      15      24 ..     231     240 ..     230     243 .. 0.88
   2 !   12.9   0.4   1.3e-05     0.079      14      30 ..     292     308 ..     284     314 .. 0.83
   3 ?   -3.3   0.0       1.6   9.4e+03      22      32 ..     577     587 ..     577     589 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.039
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 ++SPDG+ l+
  KIR64293.1 231 AVSPDGTQLV 240
                 68****9986 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.3e-05
                 EEE-TTSSEEEEEEECT CS
        PD40  14 PsfSPDGkrlaFsSdRg 30 
                  sfSPDG++++++S++ 
  KIR64293.1 292 VSFSPDGSYFVIVSTGA 308
                 69************976 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.6
                 EEEEEEECT.T CS
        PD40  22 rlaFsSdRgsG 32 
                 rl+++ +++sG
  KIR64293.1 577 RLYYTLNGQSG 587
                 79***998744 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.13   7.7e+02      14      28 ..     228     243 ..     205     259 .. 0.52
   2 ?    7.8   0.0    0.0011       6.3      11      26 ..     287     302 ..     276     315 .. 0.74
   3 ?   -3.2   0.0         3   1.8e+04      22      32 ..     332     342 ..     328     345 .. 0.73
   4 ?    0.4   0.0      0.24   1.4e+03       2      31 ..     395     420 ..     394     422 .. 0.79
   5 ?   -3.4   0.0         3   1.8e+04       5      24 ..     473     495 ..     471     500 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.13
                 EEEEEETTSSEEEE.E CS
        WD40  14 tslafspdgawlas.G 28 
                   la+spdg+ l+  G
  KIR64293.1 228 EKLAVSPDGTQLVViG 243
                 46779*****986334 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0011
                 SSEEEEEEETTSSEEE CS
        WD40  11 ssvtslafspdgawla 26 
                 s v++++fspdg++++
  KIR64293.1 287 SYVRDVSFSPDGSYFV 302
                 339***********64 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3
                 SSEEE.EEETTS CS
        WD40  22 gawla.sGsdDg 32 
                  +w+a +G+ D 
  KIR64293.1 332 PTWVAyTGG-DT 342
                 589988999.75 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.24
                 EEEEEEESSSSEEEEEEETTSSEEEEEETT CS
        WD40   2 qclrtltGHssvtslafspdgawlasGsdD 31 
                 ++ r+ +G  +v  l + p+g wl  Gs D
  KIR64293.1 395 NPGRHPRGY-GVAKLLVTPEGIWL--GS-D 420
                 566777777.78888899*****8..99.7 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 3
                 EEEESSSSE...EEEEEETTSSE CS
        WD40   5 rtltGHssv...tslafspdgaw 24 
                 rt++G s +   t++a+++  +w
  KIR64293.1 473 RTYDGTSAIgaaTAVANPDGTTW 495
                 67777755544477776666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.21s 00:00:00.82 Elapsed: 00:00:00.38
# Mc/sec: 5241.69
//
Query:       KIR64294.1  [L=149]
Description: NUDIX hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-19   70.9   0.4    1.3e-19   70.6   0.4    1.1  1  NUDIX     NUDIX domain
     0.0073   16.3   0.0      0.016   15.2   0.0    1.5  1  NUDIX_4   NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.4   1.4e-23   1.3e-19       4     129 ..       7     134 ..       5     136 .. 0.78

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 1.4e-23
                 EEEEEEEEETTSEEEEEEES..SSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHSEEE.EEEEEEEEEEEEEEEEEEEEE.....EEEEEEEEEEEEC CS
       NUDIX   4 ravgvvllnekgevLlvrrs..kkpfpg.WelPgGkvepgEtpeeAArREleEEtGlea.ellellgrlhylapydgpygd.....eheilyvfleeve 93 
                 r +g+++ +++g+++ +rrs  +  fp+ W+++gG++epgE++e+++rRE+ EEtG+++ + l  +g++        +++      + e +  fl +v+
  KIR64294.1   7 RCAGALIVDDDGRLFFQRRSpqRVLFPDtWDIVGGHLEPGEEIEDTLRREVTEETGWTVsHILGTVGEY--------RWTGndglaRIESD--FLVRVD 95 
                 56899***************998999999***************************9775555555522........22222243444555..446677 PP

                 SGCSST..STTTEEEEEEEEHHHH.HHHHTHCTHHHHHH CS
       NUDIX  94 gelepn..denevsevrwvpleel.lkeklaaesrkllp 129
                 g+l+ +  +e+ + e+rw++  +l +++++++ +  l++
  KIR64294.1  96 GDLTRPrlEEGKHTEFRWLTERDLaVLDEHRDVNDGLIR 134
                 77777778899*************877777776666665 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.7e-06     0.016       3      95 ..      11     119 ..       9     123 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-06
                 EEEEEC.TEEEEEE--TTS.SSTT-EE-SEEE.-TTS-HHHHHHHHHHS-EEEEEEEEEEEEEETTE...EEEEE.EEEE.................EE CS
     NUDIX_4   3 llirdd.grvllekRpekg.llggLwefPgge.eegeeleealareelgieveelepgtvkHvftHf...rltlt.vylv.................rv 77 
                 +li+dd gr++ ++R ++  l    w + gg+ e+gee e+ l  +e+   +e  +  tv H++  +   r+t +  + +                 r+
  KIR64294.1  11 ALIVDDdGRLFFQRRSPQRvLFPDTWDIVGGHlEPGEEIEDTLR-REVT--EE--TGWTVSHILGTVgeyRWTGNdGL-AriesdflvrvdgdltrpRL 103
                 4666666********9987699********99999999777774.3544..11..12455566644333366655544.23455555555555444444 PP

                 E.S..---EEEEEEGGGG CS
     NUDIX_4  78 eegeeapaelrwvtpeel 95 
                 eeg+++  e+rw+t+++l
  KIR64294.1 104 EEGKHT--EFRWLTERDL 119
                 433332..7888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1182.32
//
Query:       KIR64295.1  [L=256]
Description: hypothetical protein TK50_00865 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.093   12.3   0.0       0.21   11.2   0.0    1.5  1  WHIM1     WSTF, HB1, Itc1p, MBD9 motif 1


Domain annotation for each model (and alignments):
>> WHIM1  WSTF, HB1, Itc1p, MBD9 motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.2e-05      0.21      11      30 ..     231     250 ..     222     251 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.2e-05
                 CCCSTCCCS-HHHHHHHHHH CS
       WHIM1  11 LakggYyeLspeeklkiLki 30 
                 +a g+Y++L+ ee+l++L  
  KIR64295.1 231 RAAGPYAALTAEERLTMLAD 250
                 66789*************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1711.32
//
Query:       KIR64296.1  [L=243]
Description: nucleotide sugar-1-phosphate transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-13   50.7   0.1    4.2e-13   49.4   0.0    1.6  2  NTP_transferase  Nucleotidyl transferase
    1.5e-12   48.2   0.6    2.5e-12   47.5   0.6    1.4  1  NTP_transf_3     MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   4.7e-17   4.2e-13       2     114 ..       3     112 ..       2     125 .. 0.88
   2 ?   -2.0   0.0      0.23   2.1e+03     190     241 ..     184     236 ..     173     240 .. 0.47

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 4.7e-17
                      EEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--..BGGHHHHHT CS
  NTP_transferase   2 avILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfgvevlialepegk..gtAdAvala 93 
                      +++La G+G RL+P t tl+k lvpv g+ +++++ l +la+ g ++++vv+ +   + v +q++ +++ gv+++ ++ ++ +  + A ++ la
       KIR64296.1   3 GMVLAAGAGRRLRPYTDTLPKALVPVDGDTTILDIALRNLAEVGLTDVVVVVGYAADAVVTRQAELEKRHGVTLTLVHNDKAEewNNAYSLWLA 96 
                      79****************************************************************************9999977777777777 PP

                      HHHHTTSSE..EEEEETTEEE CS
  NTP_transferase  94 aelledeksdelvlvLggDhl 114
                      +e +++      vl ++gD +
       KIR64296.1  97 REHFAKG-----VLLVNGDTV 112
                      7776643.....566677766 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.23
                      HHHCCHHHTTSSCHH..HHHHHHHHHTTEEEEEECSTTEE.........-EEEXSSHHHHHHH CS
  NTP_transferase 190 lakdleelkrgedei..tdilpkaleegkvalaflfkdae.........yWsDvGtldsllea 241
                      la+ le  +r+++++  +d  ++  e+g           e          W  v ++d+l +a
       KIR64296.1 184 LADALEATWRRDPNLyyEDGYQEFAERGG----------EvraapigdvSWVEVDNHDDLARA 236
                      33333333333333211233444444433..........033333333358888888877766 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.6   2.8e-16   2.5e-12       1     107 [.       3     121 ..       3     156 .. 0.78

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 2.8e-16
                   EEEEEESS-TTTTT.....THHHHCC.CCCCHHHHHHHHHCTT.-CEEEEECSHC.....HHHHHHTTC.T..S-EEE-TTSS-.SHHHHHHHHHHH CS
  NTP_transf_3   1 aviLAGGrSsRmgg.....dKallpl.ggkpllervldalraagvdevvvvggde.....evlaalarl.g..vrvvededpgk.gplaslaaalra 82 
                   + +LA+G+++R+       +Kal+p+ g++++l+ +l++l+++g+ +vvvv+g+        +a+l+++ g  +++v+++++++ + ++sl  a ++
    KIR64296.1   3 GMVLAAGAGRRLRPytdtlPKALVPVdGDTTILDIALRNLAEVGLTDVVVVVGYAadavvTRQAELEKRhGvtLTLVHNDKAEEwNNAYSLWLAREH 99 
                   57**********7333569*******66679*********************995334332222333323433778999999753899********9 PP

                   H.SSSCEEEEETT-TT--HHHHHHH CS
  NTP_transf_3  83 aadadavlvlacDmPlltpelverl 107
                      a++vl++ +D+++ + ++ ++l
    KIR64296.1 100 F--AKGVLLVNGDTVH-PVSVERTL 121
                   8..8**********87.34444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1678.54
//
Query:       KIR64297.1  [L=354]
Description: 3-dehydroquinate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-54  184.8   2.2    2.6e-54  184.6   2.2    1.1  1  Fe-ADH_2      Iron-containing alcohol dehydrogenase
    1.5e-16   60.2   5.7    1.9e-16   59.9   5.7    1.1  1  Fe-ADH        Iron-containing alcohol dehydrogenase
    2.5e-06   26.9   2.2    2.5e-05   23.6   1.3    2.4  2  DHQ_synthase  3-dehydroquinate synthase


Domain annotation for each model (and alignments):
>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.6   2.2   4.4e-58   2.6e-54       2     248 ..      16     267 ..      15     269 .. 0.87

  Alignments for each domain:
  == domain 1  score: 184.6 bits;  conditional E-value: 4.4e-58
    Fe-ADH_2   2 igegaleklgellkelelk...kvllvadentkkaagekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvsak 97 
                 +++ga+ +l+++l++ +++   +v++v++ +    ++e ++ sl++a+  v +v    +  +le++ +l  +lr++++d+vv++GgG+ iD+aky++++
  KIR64297.1  16 VRRGAVADLAAILADGRISsggDVAVVVGPGQGGQIAELIRPSLRSAD--VFTV----AGGTLEAADDLGGKLRARSYDAVVGIGGGKTIDVAKYAATR 108
                 67899999999999998765679*********************9994..4333....57899************************************ PP

    Fe-ADH_2  98 lnvpyvsvpTaaSvDGfaspgaslvvdgkkrtvakaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklanev.seplaklsaamvqeaaek 195
                 +++p+v v+T++++DG+asp+asl++ g k ++   ++P+avi+Dld++++ P+r  ++G+GD++++++aladw+la++v  ep++ l+a   +  ae+
  KIR64297.1 109 RGLPMVTVATSLANDGIASPVASLITGGIKGSY-GVHIPIAVIVDLDFVEAGPERHNRAGIGDVVSNISALADWELARQVrGEPVDGLAASLARMGAEA 206
                 ********************************8.99******************************************885557777777777777777 PP

    Fe-ADH_2 196 lvedkke...tealeelleal.....alsgigisrpaSGsEHliSHaldmlalkqalHGeq 248
                 +++++++   + +++ l+eal     a++++g+srp SG++H+i Ha+d+l++  a HGe 
  KIR64297.1 207 VLAHPGDmtdDAFVTVLAEALissglAMAVCGTSRPSSGGCHEIMHAIDALFPGTASHGEL 267
                 777655323255665555555333348888888**************************85 PP

>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   5.7   3.1e-20   1.9e-16       8     301 ..      18     293 ..      11     322 .. 0.79

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 3.1e-20
                 TTGGGGHHHHHTTT-.....EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHHHHHH CS
      Fe-ADH   8 kgaleelgellkklgak...ralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKaiall 103
                 +ga+++l++ l++  ++    + +v+++g  +  ++++ ++ sl++a++ +tv +      tle  +++   +r+  +d+v+++GGG++iD+AK++a  
  KIR64297.1  18 RGAVADLAAILADGRISsggDVAVVVGPG--QGGQIAELIRPSLRSADV-FTVAG-----GTLEAADDLGGKLRARSYDAVVGIGGGKTIDVAKYAATR 108
                 67777777777776443344899999999..567888888999966555.33333.....379************************************ PP

                 TT..................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHH...HHH. CS
      Fe-ADH 104 lanpevedylgegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEa...yvs. 198
                  +                  lp++++ T  +++  ++p+a +     g k s++    +P ++ivD +++   P r   a+++D+++         ++ 
  KIR64297.1 109 RG------------------LPMVTVATSLANDGIASPVASLI--TGGIKGSYG--VHIPIAVIVDLDFVEAGPERHNRAGIGDVVSNISALadwELAr 185
                 *9..................********************999..455888888..88***************************99865443335554 PP

                 HT---TTSSB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---.....HHHHHHHHHHC.C.GGG.GGS-HHHHHHHHH........ CS
      Fe-ADH 199 kkanplsdalaleairliaknleravadgedleareqmllastlaglafsnaglg.....avHalahalgalf.gip.hglanaillpavlrfnaeaap 290
                 + + +  d+la + +r+ a+++     d +d +  + +++a + +gla++ +g++      +H + ha+ alf g++ hg++ ++   + +   ++ + 
  KIR64297.1 186 QVRGEPVDGLAASLARMGAEAVLAHPGDMTDDAFVTVLAEALISSGLAMAVCGTSrpssgGCHEIMHAIDALFpGTAsHGELAGLGALFCT--FLRGDV 282
                 577778999999999999999988888888889999999999999999999999999999************986556*999887444333..223334 PP

                 ..HHHHHHT.. CS
      Fe-ADH 291 erlaqlaralg 301
                 +r+a++   l 
  KIR64297.1 283 RRFAEMSACLA 293
                 66666666554 PP

>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   1.3   4.1e-09   2.5e-05      31     135 ..      87     187 ..      72     210 .. 0.79
   2 ?    1.0   0.0     0.032   1.9e+02     183     238 ..     248     297 ..     245     317 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 4.1e-09
                   T-EEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSS.EEEEEETTEEEEEEEE---SEEEEEGGGGGGS-HHHHHHHHHHHHH.HHH CS
  DHQ_synthase  31 ksllialGGGvvgDlaGfvAatylRGvrfvqvPttllaqvDssvGg.KtainlplgKNliGafaqPkavlidlevLktLperelraGlaEviK.yal 125
                    ++++ +GGG   D+a ++A   +RG+ +v+v t+l      ++     ++ +   K   G+ + P av++dl+++++ per+ raG+++v+  +++
    KIR64297.1  87 YDAVVGIGGGKTIDVAKYAAT--RRGLPMVTVATSLAND---GIASpVASLITGGIKGSYGV-HIPIAVIVDLDFVEAGPERHNRAGIGDVVSnISA 177
                   5789**************986..8**********98654...33330344566677877776.78*************************9952566 PP

                   HT-HHHHHHH CS
  DHQ_synthase 126 ikdeelfell 135
                   ++d el +++
    KIR64297.1 178 LADWELARQV 187
                   7777766655 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.032
                   HHHHHHHHHHHTTTTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT- CS
  DHQ_synthase 183 HtigHaiEallgyekllHGeaVaiGmvlaaelseklgllkkeeverllkllkklgl 238
                   H i Hai+al+   + +HGe   +G ++ + l   +  +     +++ ++l++ +l
    KIR64297.1 248 HEIMHAIDALFPG-TASHGELAGLGALFCTFLRGDVRRF-----AEMSACLARHNL 297
                   9999*****9987.9*****9999988877766444333.....444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2198.47
//
Query:       KIR64298.1  [L=239]
Description: CDP-alcohol phosphatidyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-08   34.5   0.8    2.6e-08   34.5   0.8    2.5  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
  ------ inclusion threshold ------
      0.017   15.0   2.3      0.017   15.0   2.3    2.4  2  TetR_C_14        MftR C-terminal domain
        3.2    7.0   4.1       0.96    8.7   0.4    1.9  2  DUF3379          Protein of unknown function (DUF3379)


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.8   4.3e-12   2.6e-08       3      66 .]      50     125 ..      48     125 .. 0.84
   2 ?   -0.8   2.1      0.44   2.7e+03       8      16 ..     200     208 ..     130     234 .. 0.62

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 4.3e-12
                      HHHHHHHHHHHHHHHHHGGGS-H...........HHHHHHHH...HHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf   3 PnaiTllrlllsvlailllltyyp.........lvlaillll...iasltDalDGklARrlnqvstlGkllDslaD 66 
                      P a+Tl++l+l+++a ++++++           +v++++ l+   +a  +D+ DG+lAR +++ s  G+  D laD
       KIR64298.1  50 PTALTLANLVLGLAASVTVVALADevaagtvpaWVVGLAALVgwqVAYSLDCADGQLARVTKTGSPAGARVDVLAD 125
                      99**************9997777799999998855555555566766666***********99999********99 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.44
                      HHHHHHHHH CS
  CDP-OH_P_transf   8 llrlllsvl 16 
                      +++l+l+++
       KIR64298.1 200 VAGLVLAFA 208
                      233333222 PP

>> TetR_C_14  MftR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   2.3   2.9e-06     0.017      45      92 ..      30      74 ..      27      92 .. 0.82
   2 ?   -0.6   1.6      0.21   1.3e+03      40      63 ..     124     147 ..     116     178 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.9e-06
                HHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHHHHHHH-T CS
   TetR_C_14 45 ryaawrevvAefvAeRtgtdaddlvprtvaaavlaaalaayeqwlade 92
                 + +w  +v ++vA+R+g+++++l   t+a +vl+ a++++   lade
  KIR64298.1 30 SVSQWLGAVFALVAQRLGLRPTAL---TLANLVLGLAASVTVVALADE 74
                6789****************9987...788888888888888887776 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHHHHHHHHHHTS CS
   TetR_C_14  40 AhstlryaawrevvAefvAeRtgt 63 
                 A+ + ++a + ++ A++vA+R  t
  KIR64298.1 124 ADVAAQIALVAALSATAVAQRPST 147
                 444444444444555555555544 PP

>> DUF3379  Protein of unknown function (DUF3379)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.3      0.36   2.2e+03      78      89 ..      57      68 ..      31      74 .. 0.58
   2 ?    8.7   0.4   0.00016      0.96      50     108 ..     119     178 ..     114     183 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.36
     DUF3379 78 rvalAlaASvaf 89
                ++ l laASv +
  KIR64298.1 57 NLVLGLAASVTV 68
                334555666554 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00016
     DUF3379  50 kvdvPedLaeklllkqsleeka..arkrktrvalAlaASvafvvglslallelenvlasla 108
                 +vdv +d a ++ l   l++ a  +r+   ++ +Al+A    +v+l+++++++++++as+ 
  KIR64298.1 119 RVDVLADVAAQIALVAALSATAvaQRPSTPTWLVALFAG-TWMVNLVTSVMQSGPNAASMV 178
                 69999***********99999855666677899******.78899********99987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1692.45
//
Query:       KIR64299.1  [L=291]
Description: hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-24   86.9   1.7    4.9e-24   85.4   1.7    1.7  1  Abhydrolase_1  alpha/beta hydrolase fold
    4.2e-14   53.7  17.5    5.6e-14   53.3  17.5    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
    8.2e-07   28.5   0.5    5.1e-06   25.9   0.2    2.0  2  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
       0.02   13.6   0.0      0.035   12.8   0.0    1.3  1  Ndr            Ndr family
      0.064   13.6   0.0       0.15   12.4   0.0    1.6  1  EHN            Epoxide hydrolase N terminus


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   1.7   1.4e-27   4.9e-24       1     256 [.      30     275 ..      30     276 .. 0.89

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 1.4e-27
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeype 96 
                    p++++lhG+p ss+ ++e  ++p+La+  + vi++Dl+G+g Ss +  ++  dy++ ++   + r+ld+lg++++ +  h++G  ++ ++a ++p+
     KIR64299.1  30 PAVLLLHGFPSSSHTFRE--VMPTLAD-VAYVIAPDLPGFGMSSSPTVEQ-YDYTFENLSHTIGRFLDQLGVGRFFVYLHDFGAPVGYHLATRAPD 121
                    79****************..******9.*******************987.8******************************************** PP

                    GEEEEEEESE.CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHH CS
  Abhydrolase_1  97 rVkalvllga.idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksieq 191
                    rV++lv  ++  ++    ++++   a++   + d+ a+     +++   + ++a l+ r+r ++    p+++   ++   ++ + +a++a ++ ++
     KIR64299.1 122 RVRGLVVQSGnAHEDGLGGQWDGARAYWADPTDDRRAELPGWLTFAGTRDQYVAGLPERLRTLH---APESWHLDWERMGRPGNLDAQFA-LFGDY 213
                    **********777777777777777777777777777777777777888888888889988655...47777777777767777777777.999** PP

                    HHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 192 wpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafleg 256
                    ++ ++++  +  + +  +   p+lv++g++D +++ ++   + ++l +    +i dagH+++ ++
     KIR64299.1 214 ANHRARFGEIAAYHR--DHQPPALVLWGRHDAYFDVDEVLAYHRALDR-MDAHIYDAGHFLLETH 275
                    **************9..7777************************9**.***********98766 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3  17.5   1.6e-17   5.6e-14       1     218 [.      32     280 ..      32     282 .. 0.60

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1.6e-17
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTST...S-GGCS--HHH..C.HHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.... CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhG...rsdpppldled..l.adlaalldelaagggpvvlvGHSlGGalalaaapla..lv 88 
                    vlllHG++ss++ ++  ++ + la+   v+apDlpG+G   +++   +d++   l +++ ++ld l  g g++++  H++G+ ++ ++a  a  +v
     KIR64299.1  32 VLLLHGFPSSSHTFR--EVMPTLADVAYVIAPDLPGFGmssSPTVEQYDYTFenLsHTIGRFLDQL--GVGRFFVYLHDFGAPVGYHLATRApdRV 123
                    89************8..777777999667*********8655555556666622324446677777..69999**************888888877 PP

                    EE.EEES-..----TTT....S----TTHHHHHHTT-C..CCCHCCH.S-HSCCCCHHH.......CCCCHCHCCCGHH................H CS
  Abhydrolase_6  89 vg.vlldppptalpagl....laaalelllallallrl..lawlsre.plprlfladed.......adaawrarlarla................a 153
                    +g v+ ++    +  +      + a+++++ +++ +r+  ++wl+ +   +++++a+++       a ++w   + r+                  
     KIR64299.1 124 RGlVVQSG---NAHEDGlggqWDGARAYWADPTDDRRAelPGWLTFAgT-RDQYVAGLPerlrtlhAPESWHLDWERMGrpgnldaqfalfgdyaN 215
                    77566666...33333324444444444444444444466899966632.2355554443333332245555555555533335533322221111 PP

                    HCCHHCHTTCCHHTT-TTGC........EEEC.TT-CHHHHCHHCCCH..STTEEETCE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 154 llaglgllpaaawadlpvpl........lvlg.geDplvprllerlla..qagarlpvvlpgaGHlphleepdeva 218
                     +a +g+ +a         +        lvl+   D+     +++ la  +a  r++  + +aGH++++ +++e+a
     KIR64299.1 216 HRARFGEIAA---------YhrdhqppaLVLWgRHDAYFD--VDEVLAyhRALDRMDAHIYDAGHFLLETHAAECA 280
                    1112222223.........133334445566548888777..7777776668888878888********8889998 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.2   1.4e-09   5.1e-06       5     109 ..      30     131 ..      26     149 .. 0.92
   2 ?    0.4   0.0     0.091   3.3e+02     191     220 ..     231     260 ..     218     271 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.4e-09
  Hydrolase_4   5 avvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkva 102
                   +v+l+HG+ ++s  + e++  La+  + v+a D  G+G s      v+++d   + l+  + ++ ++ +  ++f++ h  G+ +  ++++r pd+v+
   KIR64299.1  30 PAVLLLHGFPSSSHTFREVMPTLADVAY-VIAPDLPGFGMS--SSPTVEQYDYTFENLSHTIGRFLDQLGVGRFFVYLHDFGAPVGYHLATRAPDRVR 124
                  689*********************9976.99**********..44457******************999999************************** PP

  Hydrolase_4 103 glilsaP 109
                  gl++ + 
   KIR64299.1 125 GLVVQSG 131
                  **98765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.091
  Hydrolase_4 191 tlPllllhGeaDkvvdpeasrelyerlgsk 220
                  + P l+l G +D   d ++  +++++l + 
   KIR64299.1 231 QPPALVLWGRHDAYFDVDEVLAYHRALDRM 260
                  5699*********99999887777776643 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.9e-06     0.035      47     135 ..      47     134 ..      39     142 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.9e-06
                 HHHHHHHTTSEEEEEE-TT-STT-----TT-----HHHHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S CS
         Ndr  47 esmaeilekfvilhvdaPGqeegaaslpedyqfpslddladqllavldhfklksviglGvgaGAyilarfalkhperveglvLinitsk 135
                 e m ++++ + ++  d PG  + +++  e+y + + ++l++++   ld++ +  +       GA +  + a + p+rv glv  + +++
  KIR64299.1  47 EVMPTLADVAYVIAPDLPGFGMSSSPTVEQYDY-TFENLSHTIGRFLDQLGVGRFFVYLHDFGAPVGYHLATRAPDRVRGLVVQSGNAH 134
                 6788889999999999*************9998.8***********************************************8776655 PP

>> EHN  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.2e-05      0.15      66     108 .]       5      45 ..       2      45 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.2e-05
         EHN  66 nsfpqfkteidgldihFihlrsakpdaiPllllhGWPgsflef 108
                 +++ + ++++dgl++ F  +   +p   ++lllhG+P+s + f
  KIR64299.1   5 QKVRHRRADVDGLEVFFREAG--HPGQPAVLLLHGFPSSSHTF 45 
                 577888999999999887777..589999**********8865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2141.27
//
Query:       KIR64300.1  [L=738]
Description: hypothetical protein TK50_00895 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-29  101.9  81.3    1.1e-06   29.1   2.5    7.8  8  VCBS            Repeat domain in Vibrio, Colwellia, Bradyrhiz
    3.1e-21   75.2  30.1    0.00059   19.9   0.6    7.7  7  FG-GAP          FG-GAP repeat
      1e-08   35.4   0.1        5.3    7.4   0.0    4.5  4  Sen15           Sen15 protein
    0.00063   19.6   0.7         38    4.1   0.0    5.1  7  DUF3224         Protein of unknown function (DUF3224)
     0.0041   17.1   0.5         16    5.6   0.0    4.1  4  BCL_N           BCL7, N-terminal conserver region
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.26   11.3   0.0    1.6  1  NLPC_P60        NlpC/P60 family
       0.13   11.9   5.8         86    3.0   0.1    4.3  4  NCE101          Non-classical export protein 1


Domain annotation for each model (and alignments):
>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   2.4   1.7e-07   0.00043      14      60 ..     313     363 ..     307     364 .. 0.85
   2 !   29.1   2.6   4.3e-10   1.1e-06       1      58 [.     353     415 ..     353     418 .. 0.74
   3 !   27.0   5.2     2e-09     5e-06       1      60 [.     407     473 ..     407     474 .. 0.89
   4 !   29.1   2.5   4.2e-10   1.1e-06       1      58 [.     463     525 ..     463     528 .. 0.74
   5 !   24.4   5.0   1.3e-08   3.2e-05       1      60 [.     517     583 ..     517     584 .. 0.88
   6 !   29.1   2.5   4.4e-10   1.1e-06       1      58 [.     573     635 ..     573     637 .. 0.73
   7 !   22.9   5.3   3.8e-08   9.7e-05       1      60 [.     627     693 ..     627     694 .. 0.88
   8 !   20.1   1.6   2.8e-07   0.00071       1      33 [.     683     717 ..     683     734 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.7e-07
        VCBS  14 ndgglrvyrnngdGt.ftdvtktslgg...sgggtgvavgDlDgDGdlDll 60 
                 +dg+ r+yr+  dG+ f+  t++++g+   s  g  +a gD++gDG+ D++
  KIR64300.1 313 GDGTMRMYRWLSDGNsFNRTTDYDSGAfrlSAVGDRMASGDVNGDGKDDIV 363
                 5899********996699999998888776777778**************8 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 4.3e-10
        VCBS   1 DldgDGrlDlvva..n.dgglrvyrnngdGtftdvtktslgg..sgggtgvavgDlDgDGdlD 58 
                 D++gDG++D+v+a  + dg++  y++++ ++  +v+  s++   s  +  +++gD++gD +++
  KIR64300.1 353 DVNGDGKDDIVMAyqQpDGTFSYYVWRNGNSAASVWYDSGPFtlSRVAGRLVLGDFNGDRKAE 415
                 9************87447998888888655555555443333335556679********9875 PP

  == domain 3  score: 27.0 bits;  conditional E-value: 2e-09
        VCBS   1 DldgDGrlDlvva...ndgglrvyrnngdGt.ftdvtktslgg...sgggtgvavgDlDgDGdlDll 60 
                 D++gD +++  +a   +dg+ r+yr+  dG+ f+  t++++g+   s  g  +a gD++gDG+ D++
  KIR64300.1 407 DFNGDRKAEPAMAydqGDGTMRIYRWLSDGNsFNRTTDYDSGAfrlSAVGDRMASGDVNGDGKDDIV 473
                 9************8866899********996699999998888776777778**************8 PP

  == domain 4  score: 29.1 bits;  conditional E-value: 4.2e-10
        VCBS   1 DldgDGrlDlvva..n.dgglrvyrnngdGtftdvtktslgg..sgggtgvavgDlDgDGdlD 58 
                 D++gDG++D+v+a  + dg++  y++++ ++  +v+  s++   s  +  +++gD++gD +++
  KIR64300.1 463 DVNGDGKDDIVMAyqQpDGTFSYYVWRNGNSAASVWYDSGPFtlSRVAGRLVLGDFNGDRKAE 525
                 9************87447998888888655555555443333335556679********9875 PP

  == domain 5  score: 24.4 bits;  conditional E-value: 1.3e-08
        VCBS   1 DldgDGrlDlvva...ndgglrvyrnngdGt.ftdvtktslgg...sgggtgvavgDlDgDGdlDll 60 
                 D++gD +++  +a   +dg+ r yr+  dG+ f+  t++++g+   s  g  +a gD++gDG+ D++
  KIR64300.1 517 DFNGDRKAEPAMAydqGDGTMRTYRWLSDGNsFNRTTDYDSGAfrlSAVGDRMASGDVNGDGKDDIV 583
                 9************8766899999****9996599999998888776777778**************8 PP

  == domain 6  score: 29.1 bits;  conditional E-value: 4.4e-10
        VCBS   1 DldgDGrlDlvva..n.dgglrvyrnngdGtftdvtktslgg..sgggtgvavgDlDgDGdlD 58 
                 D++gDG++D+v+a  + dg++  y++++ ++  +v+  s++   s  +  +++gD++gD +++
  KIR64300.1 573 DVNGDGKDDIVMAyqQpDGTFSYYVWRNGNSAASVWYDSGPFtlSRVAGRLVLGDFNGDRKAE 635
                 9************87447998888888655555555443333335556679********9875 PP

  == domain 7  score: 22.9 bits;  conditional E-value: 3.8e-08
        VCBS   1 DldgDGrlDlvva...ndgglrvyrnngdGt.ftdvtktslgg...sgggtgvavgDlDgDGdlDll 60 
                 D++gD +++  +a   +dg+ r yr+  dG+ f+  t++++g+   s  g  +a+ D+DgDG+ D++
  KIR64300.1 627 DFNGDRKAEPAMAydqGDGTMRTYRWLSDGNsFNRTTDYDSGAfrlSVVGDRMAADDVDGDGKDDIV 693
                 9************8766899999****9996599999998888766767778**************8 PP

  == domain 8  score: 20.1 bits;  conditional E-value: 2.8e-07
        VCBS   1 DldgDGrlDlvva..n.dgglrvyrnngdGtftdvt 33 
                 D+dgDG++D+v+a  + dg++  y+++ +G+f    
  KIR64300.1 683 DVDGDGKDDIVMAyqQpDGTFSYYVWR-NGNFAARV 717
                 9************87448999999999.78987543 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.6   2.3e-07   0.00059       6      22 ..     350     366 ..     346     378 .. 0.75
   2 ?    5.0   0.0     0.011        27       5      16 ..     403     414 ..     401     415 .. 0.82
   3 !   19.9   0.6   2.3e-07   0.00059       6      22 ..     460     476 ..     456     488 .. 0.75
   4 ?    5.0   0.0     0.011        27       5      16 ..     513     524 ..     511     525 .. 0.82
   5 !   19.9   0.6   2.3e-07   0.00059       6      22 ..     570     586 ..     566     598 .. 0.75
   6 ?    5.0   0.0     0.011        27       5      16 ..     623     634 ..     621     635 .. 0.82
   7 !   15.4   1.8   5.9e-06     0.015       6      22 ..     680     696 ..     676     708 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.3e-07
                 EEESTSSSSS-EEEEEE CS
      FG-GAP   6 avgDvNGDGyaDLavGA 22 
                 a gDvNGDG++D++ + 
  KIR64300.1 350 ASGDVNGDGKDDIVMAY 366
                 88************984 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.011
                 EEEESTSSSSS- CS
      FG-GAP   5 lavgDvNGDGya 16 
                 l +gD+NGD +a
  KIR64300.1 403 LVLGDFNGDRKA 414
                 679******665 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 2.3e-07
                 EEESTSSSSS-EEEEEE CS
      FG-GAP   6 avgDvNGDGyaDLavGA 22 
                 a gDvNGDG++D++ + 
  KIR64300.1 460 ASGDVNGDGKDDIVMAY 476
                 88************984 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.011
                 EEEESTSSSSS- CS
      FG-GAP   5 lavgDvNGDGya 16 
                 l +gD+NGD +a
  KIR64300.1 513 LVLGDFNGDRKA 524
                 679******665 PP

  == domain 5  score: 19.9 bits;  conditional E-value: 2.3e-07
                 EEESTSSSSS-EEEEEE CS
      FG-GAP   6 avgDvNGDGyaDLavGA 22 
                 a gDvNGDG++D++ + 
  KIR64300.1 570 ASGDVNGDGKDDIVMAY 586
                 88************984 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.011
                 EEEESTSSSSS- CS
      FG-GAP   5 lavgDvNGDGya 16 
                 l +gD+NGD +a
  KIR64300.1 623 LVLGDFNGDRKA 634
                 679******665 PP

  == domain 7  score: 15.4 bits;  conditional E-value: 5.9e-06
                 EEESTSSSSS-EEEEEE CS
      FG-GAP   6 avgDvNGDGyaDLavGA 22 
                 a+ Dv+GDG++D++ + 
  KIR64300.1 680 AADDVDGDGKDDIVMAY 696
                 666***********984 PP

>> Sen15  Sen15 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0022       5.7      69      93 ..     357     381 ..     339     384 .. 0.80
   2 !    7.3   0.0    0.0022       5.7      69      93 ..     467     491 ..     449     494 .. 0.80
   3 !    7.3   0.0    0.0022       5.7      69      93 ..     577     601 ..     559     604 .. 0.80
   4 !    7.4   0.0    0.0021       5.3      67      93 ..     685     711 ..     671     715 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0022
       Sen15  69 erkkrivLaivddDsTvvYYkvtdG 93 
                 + k  iv+a ++ D+T +YY   +G
  KIR64300.1 357 DGKDDIVMAYQQPDGTFSYYVWRNG 381
                 37899***************98887 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0022
       Sen15  69 erkkrivLaivddDsTvvYYkvtdG 93 
                 + k  iv+a ++ D+T +YY   +G
  KIR64300.1 467 DGKDDIVMAYQQPDGTFSYYVWRNG 491
                 37899***************98887 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0022
       Sen15  69 erkkrivLaivddDsTvvYYkvtdG 93 
                 + k  iv+a ++ D+T +YY   +G
  KIR64300.1 577 DGKDDIVMAYQQPDGTFSYYVWRNG 601
                 37899***************98887 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0021
       Sen15  67 kserkkrivLaivddDsTvvYYkvtdG 93 
                 +++ k  iv+a ++ D+T +YY   +G
  KIR64300.1 685 DGDGKDDIVMAYQQPDGTFSYYVWRNG 711
                 4447899***************98887 PP

>> DUF3224  Protein of unknown function (DUF3224)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.015        39      30      58 ..     347     375 ..     327     381 .. 0.83
   2 ?    0.2   0.0      0.24   6.2e+02      33      81 ..     404     456 ..     369     463 .. 0.64
   3 ?    3.8   0.0     0.018        47      31      58 ..     458     485 ..     442     489 .. 0.84
   4 ?    0.1   0.0      0.27   6.8e+02      33      78 ..     514     563 ..     480     570 .. 0.64
   5 ?    4.1   0.0     0.015        38      30      58 ..     567     595 ..     545     601 .. 0.83
   6 ?   -0.6   0.0      0.43   1.1e+03      34      59 ..     625     650 ..     591     685 .. 0.67
   7 ?   -2.8   0.0         2     5e+03      36      58 ..     683     705 ..     675     708 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.015
                 EEEE-TTEEEEEEEEEEEEE.CCTTEEEE CS
     DUF3224  30 ekafsGdleGtskgemllayaeeegsaay 58 
                 +   sGd++G +k ++++ay++ +g+  y
  KIR64300.1 347 DRMASGDVNGDGKDDIVMAYQQPDGTFSY 375
                 55679***************999888766 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.24
                 E-TTEEEEEEEEEEEEE.CCTTEEEEEEE....EEEEEEETTEEEEEEEEEEE CS
     DUF3224  33 fsGdleGtskgemllayaeeegsaayvgl....ervegtldgrkGsfvlqhsg 81 
                   Gd +G  k e  +ay++ +g++++       ++++ t+d  +G+f l + g
  KIR64300.1 404 VLGDFNGDRKAEPAMAYDQGDGTMRIYRWlsdgNSFNRTTDYDSGAFRLSAVG 456
                 45999999999999999999999886543222256777777777777776655 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.018
                 EEE-TTEEEEEEEEEEEEE.CCTTEEEE CS
     DUF3224  31 kafsGdleGtskgemllayaeeegsaay 58 
                    sGd++G +k ++++ay++ +g+  y
  KIR64300.1 458 RMASGDVNGDGKDDIVMAYQQPDGTFSY 485
                 5669***************999888766 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.27
                 E-TTEEEEEEEEEEEEE.CCTTEEEEEEE....EEEEEEETTEEEEEEEE CS
     DUF3224  33 fsGdleGtskgemllayaeeegsaayvgl....ervegtldgrkGsfvlq 78 
                   Gd +G  k e  +ay++ +g++++       ++++ t+d  +G+f l 
  KIR64300.1 514 VLGDFNGDRKAEPAMAYDQGDGTMRTYRWlsdgNSFNRTTDYDSGAFRLS 563
                 45999999999999***999999876543122245777777777777665 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.015
                 EEEE-TTEEEEEEEEEEEEE.CCTTEEEE CS
     DUF3224  30 ekafsGdleGtskgemllayaeeegsaay 58 
                 +   sGd++G +k ++++ay++ +g+  y
  KIR64300.1 567 DRMASGDVNGDGKDDIVMAYQQPDGTFSY 595
                 56679***************999888766 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 0.43
                 -TTEEEEEEEEEEEEE.CCTTEEEEE CS
     DUF3224  34 sGdleGtskgemllayaeeegsaayv 59 
                  Gd +G  k e  +ay++ +g++++ 
  KIR64300.1 625 LGDFNGDRKAEPAMAYDQGDGTMRTY 650
                 59999999999999999999988765 PP

  == domain 7  score: -2.8 bits;  conditional E-value: 2
                 TEEEEEEEEEEEEE.CCTTEEEE CS
     DUF3224  36 dleGtskgemllayaeeegsaay 58 
                 d+ G +k ++++ay++ +g+  y
  KIR64300.1 683 DVDGDGKDDIVMAYQQPDGTFSY 705
                 68899999999999888887665 PP

>> BCL_N  BCL7, N-terminal conserver region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.049   1.3e+02      37      47 ..     313     323 ..     310     324 .. 0.90
   2 !    5.6   0.0    0.0063        16      37      47 ..     423     433 ..     421     434 .. 0.90
   3 ?    1.6   0.0      0.12     3e+02      37      47 ..     533     543 ..     531     544 .. 0.90
   4 ?    1.6   0.0      0.12     3e+02      37      47 ..     643     653 ..     641     654 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.049
       BCL_N  37 kdtslkiyKWV 47 
                 +d +++ y+W 
  KIR64300.1 313 GDGTMRMYRWL 323
                 699*******5 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0063
       BCL_N  37 kdtslkiyKWV 47 
                 +d +++iy+W 
  KIR64300.1 423 GDGTMRIYRWL 433
                 699*******5 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.12
       BCL_N  37 kdtslkiyKWV 47 
                 +d +++ y+W 
  KIR64300.1 533 GDGTMRTYRWL 543
                 699*******5 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.12
       BCL_N  37 kdtslkiyKWV 47 
                 +d +++ y+W 
  KIR64300.1 643 GDGTMRTYRWL 653
                 699*******5 PP

>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0001      0.26       4      72 ..     179     240 ..     173     278 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
                 B-TT--BTT..EB-HHHHHHHHHHTTT----SSHHHHCCCSEE..EEGGG--TTEEEEESGTGGESEEEEE CS
    NLPC_P60   4 YrwGGksps..gfDCsglvryafakagielprssgeqeaagkkkeiskselkrGDLvffktkkgisHvgiY 72 
                 ++w  ++++   +DCsglv +a+     +l+ ++++ +  +++++isk++l++GD++ +++    +Hv+++
  KIR64300.1 179 FSWDPTHTRkyRRDCSGLVGMAW-----HLNADPSTRTLPQFSNQISKADLQAGDILNIAS----KHVVLF 240
                 6666555556689******9987.....56677777777888888***********99988....777765 PP

>> NCE101  Non-classical export protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.033        86      16      25 ..     371     380 ..     370     386 .. 0.83
   2 ?    3.0   0.1     0.033        86      16      25 ..     481     490 ..     480     496 .. 0.83
   3 ?    3.0   0.1     0.033        86      16      25 ..     591     600 ..     590     606 .. 0.83
   4 ?    2.6   0.1     0.042   1.1e+02      16      25 ..     701     710 ..     700     717 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.033
      NCE101  16 GvaaYylyEk 25 
                 G+++Yy++ +
  KIR64300.1 371 GTFSYYVWRN 380
                 9*******88 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.033
      NCE101  16 GvaaYylyEk 25 
                 G+++Yy++ +
  KIR64300.1 481 GTFSYYVWRN 490
                 9*******88 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.033
      NCE101  16 GvaaYylyEk 25 
                 G+++Yy++ +
  KIR64300.1 591 GTFSYYVWRN 600
                 9*******88 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.042
      NCE101  16 GvaaYylyEk 25 
                 G+++Yy++ +
  KIR64300.1 701 GTFSYYVWRN 710
                 9*******87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 5285.28
//
Query:       KIR64301.1  [L=268]
Description: hypothetical protein TK50_00905 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1844.97
//
Query:       KIR64302.1  [L=64]
Description: regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-22   76.9   0.7      1e-21   76.7   0.7    1.1  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.7   5.6e-26     1e-21       1      54 []       9      62 ..       9      62 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 5.6e-26
      DUF397  1 atWrKSsySgggggnCVEvaalpdavavRDSkdpdgpvLtftpaewaaFlagvk 54
                a+WrKS++S+++gg+CVEva l d vavRDSkd+ gp+L+f+++ w++F++++k
  KIR64302.1  9 AVWRKSTRSDSNGGACVEVADLRDGVAVRDSKDRFGPTLAFDARGWRTFIDSLK 62
                58*****************99888677************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 469.62
//
Query:       KIR64303.1  [L=74]
Description: hypothetical protein TK50_00920 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0062   16.7   0.0       0.01   16.0   0.0    1.4  1  HTH_17      Helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.017   14.9   0.0    1.2  1  Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-06      0.01       1      47 [.       7      55 ..       7      56 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-06
      HTH_17  1 lltveEaAelLgvsrstvyrlirrgelpaa..k.iGrrwriprsdleewl 47
                l+  +E++e Lgvsr  v +l +r ++p    +  G+      +d+e+w+
  KIR64303.1  7 LYGSAELQERLGVSRVRVVQLTSRPDFPEPfdRlAGG-AVWLVEDVEAWI 55
                57789**********************7668766555.888889999997 PP

>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.9e-06     0.017       8      51 .]      12      55 ..       9      55 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.9e-06
  Phage_AlpA  8 eVeqktglsrstiYrlikdgeFPkkv.kLGvrsVgWlesEIdeWi 51
                e+ + +g sr  + +l ++ +FP ++ +L + +V Wl +++++Wi
  KIR64303.1 12 ELQERLGVSRVRVVQLTSRPDFPEPFdRLAGGAV-WLVEDVEAWI 55
                677899*******************967888886.*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 558.92
//
Query:       KIR64304.1  [L=400]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-10   39.6   3.2      5e-10   39.6   3.2    4.2  5  HTH_31    Helix-turn-helix domain
  ------ inclusion threshold ------
       0.02   14.9   0.0      0.049   13.7   0.0    1.7  1  HTH_3     Helix-turn-helix
      0.062   13.3   0.0        0.1   12.6   0.0    1.4  1  HTH_19    Helix-turn-helix domain
       0.18   12.1  15.9        1.5    9.2   0.5    4.2  5  TPR_12    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   3.2   1.1e-13     5e-10       3      59 ..      10      66 ..       8      70 .. 0.94
   2 ?   -1.9   0.1         1   4.5e+03       5      44 ..     207     216 ..     187     233 .. 0.60
   3 ?    0.5   0.6      0.18   8.1e+02      42      59 ..     291     308 ..     286     315 .. 0.77
   4 ?   -2.8   3.5       1.9   8.6e+03      10      28 ..     298     316 ..     294     353 .. 0.59
   5 ?   -2.4   0.1       1.4   6.3e+03      42      56 ..     385     399 ..     377     400 .] 0.70

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 1.1e-13
      HTH_31  3 GalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpa 59
                G++++ +R r++Lsq+  A+rlg s+s++ ++E+G r + + ++l+ +a +l+ d a
  KIR64304.1 10 GRRVAYWRGRRRLSQQVFADRLGRSKSWVDKVERGVRSLDKVSTLRDIAAVLRIDTA 66
                999999***********************************************9876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1
      HTH_31   5 lLralReraGLsqeevAerlgvsestlsrlEqGrrgrpsp 44 
                   ra                             +  r + 
  KIR64304.1 207 VFRA-----------------------------AG-RARA 216
                 3332.............................22.2233 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.18
      HTH_31  42 pspavlealaralgldpa 59 
                 p+  +l+++a al+l +a
  KIR64304.1 291 PTAVDLARAAAALDLGDA 308
                 677799999999999655 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 1.9
      HTH_31  10 ReraGLsqeevAerlgvse 28 
                 R++a L + +++e++ + e
  KIR64304.1 298 RAAAALDLGDAGEAVAWHE 316
                 4444444444444444444 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 1.4
      HTH_31  42 pspavlealaralgl 56 
                   pa++  la a+g+
  KIR64304.1 385 HAPAAIIELAVAVGV 399
                 567888888888887 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.1e-05     0.049       4      53 ..      16      66 ..      13      68 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
                HHHHTTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  4 lRkqlglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvsld 53
                +R  + lsq+ +A++lG s+s + + E+G ++   ++tl  +a +L ++++
  KIR64304.1 16 WRGRRRLSQQVFADRLGRSKSWVDKVERGvRSLDKVSTLRDIAAVLRIDTA 66
                677889***********************55555689******99999876 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.3e-05       0.1       1      60 [.      10      69 ..      10      74 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aelllkiaealgidleyll 60
                G+r+   R  + l+q+  a+rlg s+s   + E g +  ++  ++l++ia  l id+  ll
  KIR64304.1 10 GRRVAYWRGRRRLSQQVFADRLGRSKSWVDKVERGVR-SLDkVSTLRDIAAVLRIDTAVLL 69
                8999999****************************99.6666********99999876666 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.79   3.5e+03      38      56 ..      44      62 ..      39      66 .. 0.81
   2 ?   -3.8   0.0       3.6   1.6e+04      20      27 ..      89      96 ..      85      99 .. 0.50
   3 ?    9.2   0.5   0.00033       1.5      10      66 ..     167     219 ..     160     222 .. 0.78
   4 ?    9.0   3.4   0.00039       1.7      10      74 ..     252     321 ..     245     323 .. 0.86
   5 ?   -3.2   0.1       2.5   1.1e+04      45      56 ..     333     344 ..     325     359 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.79
      TPR_12 38 GpdhpltattlrnLgrlyr 56
                G  +++ ++tlr+++ ++r
  KIR64304.1 44 GVRSLDKVSTLRDIAAVLR 62
                5567888999999999986 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.6
      TPR_12 20 deAlelle 27
                 eAl+ +e
  KIR64304.1 89 REALSTYE 96
                45555555 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00033
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66 
                 a+vl +lg+ +      ++a+++a  +  +d  l+a++   Lg+++ra+gr ++A++
  KIR64304.1 167 ASVLVKLGEVELGWLAADRAMAAA--T--GDPVLVAAAAVQLGQVFRAAGRARAAQS 219
                 566666666666666677888888..4..56679*******************9986 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00039
      TPR_12  10 aavlrrlgrydeAlellekaleiarrl.lGpdhpltat..tlrnLgrly..ralgryeeAlelleealai 74 
                 a+  +r+g+   A+ell++a  +a r+  G dh+ ta   t  +L+r+   + lg+  eA++++e+++++
  KIR64304.1 252 ALSAARRGDDRAAIELLDEAAGMAARVgDGQDHHRTAFgpTAVDLARAAaaLDLGDAGEAVAWHERTTRR 321
                 56678999999*************99999******9966699999999623477************9876 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 2.5
      TPR_12  45 attlrnLgrlyr 56 
                 a+ l + +r+y 
  KIR64304.1 333 AAHLVDAARAYA 344
                 555555555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2737.64
//
Query:       KIR64305.1  [L=67]
Description: hypothetical protein TK50_00930 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 526.33
//
Query:       KIR64306.1  [L=179]
Description: cupin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-21   73.8   0.5    1.8e-20   72.4   0.1    1.8  2  Cupin_2          Cupin domain
    7.9e-08   32.0   0.0      1e-07   31.7   0.0    1.2  1  Cupin_1          Cupin
    2.9e-06   26.9   0.0    6.2e-06   25.8   0.0    1.5  1  Cupin_3          Protein of unknown function (DUF861)
    8.8e-06   25.9   0.0    1.4e-05   25.2   0.0    1.4  1  CENP-C_C         Mif2/CENP-C like
    6.2e-05   22.9   0.1    7.7e-05   22.6   0.1    1.2  1  AraC_binding     AraC-like ligand binding domain
    0.00041   20.2   0.0    0.00076   19.3   0.0    1.4  1  EutQ             Ethanolamine utilisation protein EutQ
     0.0093   15.9   0.0      0.013   15.4   0.0    1.2  1  MannoseP_isomer  Mannose-6-phosphate isomerase
  ------ inclusion threshold ------
      0.072   12.7   0.0        0.1   12.3   0.0    1.2  1  DMSP_lyase       Dimethlysulfonioproprionate lyase
       0.17   11.8   0.0        0.3   11.0   0.0    1.5  1  Cupin_7          ChrR Cupin-like domain
       0.18   12.0   0.0       0.27   11.4   0.0    1.2  1  ARD              ARD/ARD' family


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.4   2.6e+03      27      38 ..      27      38 ..      21      43 .. 0.71
   2 !   72.4   0.1   9.8e-24   1.8e-20       4      71 .]      59     126 ..      56     126 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.4
                ESEEEEEECTEE CS
     Cupin_2 27 eGegeltvdgee 38
                eG ++l+ +g+e
  KIR64306.1 27 EGALKLINGGQE 38
                677777777765 PP

  == domain 2  score: 72.4 bits;  conditional E-value: 9.8e-24
                 EEETTEEEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEEE CS
     Cupin_2   4 elppGesapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllvvy 71 
                 +++pG    +h H  ede fyV++Ge++++ ++++++ ++Gd+vy+p+gt+H+frN g+e+a+llv y
  KIR64306.1  59 RIAPGFGNLPHAHGAEDEAFYVVSGEFRFINGDRTFTAGPGDFVYIPRGTRHGFRNLGTEEAKLLVFY 126
                 799*999*********************************************************9976 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   5.7e-11     1e-07      31     127 ..      51     139 ..      35     163 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 5.7e-11
                 STEEEEEEEE.TTEEEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSSSEEEEEEEESSSTT-EEHSCEH CS
     Cupin_1  31 lgisaarvdlepgglllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgdepavaivvfdtnnpgnqsvlaal 127
                  ++s+   +++pg  +lPh h    e +yv+ Ge r    + +    d++ +  +Gd +++P+g  h + n g ++   + vf t + +++  l+ +
  KIR64306.1  51 GRLSLMEGRIAPGFGNLPHAHGAEDEAFYVVSGEFR----FING---DRTFTAGPGDFVYIPRGTRHGFRNLG-TEEAKLLVFYTPAGAEEFFLQHG 139
                 5788889999**************************....4443...678899*******************9.77777888888888777555544 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   3.5e-09   6.2e-06      22      61 ..      71     109 ..      65     125 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 3.5e-09
                 CESSEEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTEE CS
     Cupin_3  22 tyeedEfcyileGevkvtpeggetvelraGDlvvlpkgls 61 
                 +  edE +y+++Ge ++   g  t++ ++GD+v++p g++
  KIR64306.1  71 HGAEDEAFYVVSGEFRFIN-GDRTFTAGPGDFVYIPRGTR 109
                 5678***************.******************93 PP

>> CENP-C_C  Mif2/CENP-C like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   7.9e-09   1.4e-05      36      82 ..      77     123 ..      62     136 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 7.9e-09
                 EEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEE CS
    CENP-C_C  36 vFyViqGrvevtvsktsfvigkgsvFqvPagneysieNklnkeaklf 82 
                 +FyV+ G+ +    +  f++g+g+  ++P+g    ++N + +eakl+
  KIR64306.1  77 AFYVVSGEFRFINGDRTFTAGPGDFVYIPRGTRHGFRNLGTEEAKLL 123
                 7*******************************************985 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   4.3e-08   7.7e-05      19      80 ..      69     131 ..      60     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4.3e-08
                   ETT-.SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---G CS
  AraC_binding  19 hvhd.eyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfegel 80 
                   h h+ e +  yv++G+ r+  ++rt+ +gpGd + +p+g+ H ++  + ++ ++ ++y ++ +
    KIR64306.1  69 HAHGaEDEAFYVVSGEFRFINGDRTFTAGPGDFVYIPRGTRHGFRNLGTEEAKLLVFYTPAGA 131
                   55555555569**********************************999999999999887765 PP

>> EutQ  Ethanolamine utilisation protein EutQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   4.2e-07   0.00076      96     148 ..      75     129 ..      71     133 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 4.2e-07
        EutQ  96 deidyvieGrldvlidGrkvvaeaGdviliPkgskiefsv..tdeakflyvayPa 148
                 de  yv+ G++  +   r+ +a++Gd ++iP+g++  f    t+eak+l +  Pa
  KIR64306.1  75 DEAFYVVSGEFRFINGDRTFTAGPGDFVYIPRGTRHGFRNlgTEEAKLLVFYTPA 129
                 8999*******************************99974348999999998888 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.4e-06     0.013      81     132 ..      69     122 ..      50     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.4e-06
  MannoseP_isomer  81 hhhra..ehWvvvkGtakvtvddevlllkenestyiplgaihrlenpGkiplel 132
                      h h a  e + vv+G  +  ++d++++    + +yip g+ h + n G  + +l
       KIR64306.1  69 HAHGAedEAFYVVSGEFRFINGDRTFTAGPGDFVYIPRGTRHGFRNLGTEEAKL 122
                      55555116799*************************************987776 PP

>> DMSP_lyase  Dimethlysulfonioproprionate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.6e-05       0.1     111     155 ..      69     113 ..      62     124 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.6e-05
  DMSP_lyase 111 Hhhaa.eelYlvlsggaefrqgeaewlsrgiGevifnepgikhamr 155
                 H h a +e+++v+sg   f +g+   +  g G+ ++ ++g +h  r
  KIR64306.1  69 HAHGAeDEAFYVVSGEFRFINGDRT-FTAGPGDFVYIPRGTRHGFR 113
                 8887779********8777666665.789**************877 PP

>> Cupin_7  ChrR Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00017       0.3      30      77 ..      59     111 ..      33     126 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
                 EE-TTEE---EE-T.T-EEEEEEEEEEEETTEE..E..ETTEEEEE-TT-EE- CS
     Cupin_7  30 ryapgsafsahkHp.ggeeilVLeGvfsdeegd..y..paGsylrnppgssha 77 
                 r+apg    +h H  + e ++V++G+f+  +gd  +  + G+++  p+g++h 
  KIR64306.1  59 RIAPGFGNLPHAHGaEDEAFYVVSGEFRFINGDrtFtaGPGDFVYIPRGTRHG 111
                 677776666777751567799*****997666522666678999999999995 PP

>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00015      0.27      91     145 ..      73     122 ..      67     131 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
         ARD  91 edeeirliveGtgyFdvrskdeawirvlvekGDLivlPagiyhrFtltednkvka 145
                  ++e+ ++v+G+  F   + d+++      +GD++ +P g++h F     ++ k 
  KIR64306.1  73 AEDEAFYVVSGE--FRFINGDRTFT---AGPGDFVYIPRGTRHGFRNLGTEEAKL 122
                 567788888877..44457788887...899*************97655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1510.25
//
Query:       KIR64307.1  [L=258]
Description: methionine aminopeptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-38  132.2   0.0    2.5e-38  131.9   0.0    1.0  1  Peptidase_M24  Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.9   0.0   1.4e-42   2.5e-38       4     209 .]      14     246 ..      12     246 .. 0.89

  Alignments for each domain:
  == domain 1  score: 131.9 bits;  conditional E-value: 1.4e-42
                    HHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT...........TCEESSSSEEEEGGGGGSTTTBCSSSB--TTEEEEEEEEEEETTE CS
  Peptidase_M24   4 rkaariasaaleavleaikpgvterelaaeieattlkrhg...........arglafppivasgenaavlhytpndrvlkegdlvlidagaeydgy 88 
                    r+a+++++ +l+ ++ +++ g++  +++++++a+ + + g           ++   f   +++++n+avlh+ p d  l +gdl+ +d+++ + g 
     KIR64307.1  14 REAGALVADILQTLKGRCEVGTNLLDIDRWAQAM-IVEAGasscyvdyapsFGRGPFGHYICTSVNDAVLHGLPHDYALADGDLLSLDLAVSVGGV 108
                    9**************99***************77.7777779999988888666789*************************************** PP

                    EEEEEEEEECSSGSH.HHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTBCCGBSSCSEEEESSSSSEEEEEESS..STTCSSB--TT CS
  Peptidase_M24  89 asDitrTvlvGkftp.eqrelyeavleaqeaaikavkpGvtlseidaaarevlesaglakffphglGHgvGlevhdegpsvsr..esndgrkleeG 181
                    ++D++  ++vG+ +p e   l++a+++a+ a+i+av pG+++++i++a+  vl++ag+ ++ +++ GHgvG  +h++ p+vs+  ++++g kl++G
     KIR64307.1 109 VADSAISFIVGDSKPsESVALIAATERALAAGIAAVGPGARIGDISHAIGTVLQDAGY-QVNTQFGGHGVGSTMHQD-PHVSNtgRPGRGYKLRPG 202
                    ***********555534566**************************************.8889*************9.**998676779******* PP

                    BEEEEEEEEEEET........TT........EEEEEBEEEEEES CS
  Peptidase_M24 182 mvftiEpgiyfap........ge........ggvriedtvlvte 209
                      +++Ep i+  +        g+         +++ e+t+ +te
     KIR64307.1 203 LLLALEPWIMADTdelitdedGWtlrsktgcRTAHSEHTIAITE 246
                    *******888444344444444488888876799********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2037.43
//
Query:       KIR64308.1  [L=110]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-09   36.1   0.9    1.4e-08   34.9   0.9    1.7  1  HTH_31        Helix-turn-helix domain
    1.5e-06   28.1   0.0    2.5e-06   27.5   0.0    1.4  1  HTH_3         Helix-turn-helix
     0.0026   18.1   0.0      0.004   17.5   0.0    1.4  1  HTH_26        Cro/C1-type HTH DNA-binding domain
     0.0032   16.9   0.3        1.8    8.1   0.0    2.4  2  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
  ------ inclusion threshold ------
      0.015   15.3   0.0      0.023   14.7   0.0    1.3  1  HTH_19        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.9     4e-12   1.4e-08       1      59 [.      16      72 ..      16      78 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 4e-12
      HTH_31  1 aLGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpa 59
                +LGalLr++R  + + ++++   ++vs+ tl+++E+Gr   p  ++++a+a++lgl+ +
  KIR64308.1 16 RLGALLRHARGDRSMLHTAL--DARVSPETLRKIESGRVATPAFSTIAAIADVLGLSLD 72
                79***********7776666..8889******************************955 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   6.8e-10   2.5e-06      19      53 ..      37      72 ..      27      74 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 6.8e-10
                HTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHH CS
       HTH_3 19 lGvsrstisriEnG.ernPsletlkklakaLgvsld 53
                + vs+ t+++iE+G  + P  +t+ ++a++Lg+sld
  KIR64308.1 37 ARVSPETLRKIESGrVATPAFSTIAAIADVLGLSLD 72
                569*******************************98 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.1e-06     0.004      20      55 ..      37      72 ..      16      76 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.1e-06
      HTH_26 20 tgisaatlsrlvkgkpervsldtLdkiCdaLgctpg 55
                + +s  tl ++ +g++ ++ ++t+++i+d+Lg +++
  KIR64308.1 37 ARVSPETLRKIESGRVATPAFSTIAAIADVLGLSLD 72
                458999**************************9875 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0005       1.8      22      47 ..      22      47 ..      18      48 .. 0.81
   2 !    6.6   0.1    0.0015       5.2      29      50 ..      59      80 ..      58      82 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0005
  HTH_Tnp_ISL3 22 elllesrsvkavArqlgvSwtTVwri 47
                  + ++ +rs+ + A + +vS+ T++ i
    KIR64308.1 22 RHARGDRSMLHTALDARVSPETLRKI 47
                  4455559***************9865 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0015
  HTH_Tnp_ISL3 29 svkavArqlgvSwtTVwrildr 50
                  +++a+A+ lg+S + Vw  ++r
    KIR64308.1 59 TIAAIADVLGLSLDAVWAEINR 80
                  99***************98777 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   6.4e-06     0.023      17      58 ..      32      73 ..      14      80 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.4e-06
      HTH_19 17 elaerlgisrskisaiEngkkdvpsaelllkiaealgidley 58
                  a ++++s+  +++iE+g+  +p  +++ +ia  lg++l++
  KIR64308.1 32 HTALDARVSPETLRKIESGRVATPAFSTIAAIADVLGLSLDA 73
                445588999**********877999**************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 774.56
//
Query:       KIR64309.1  [L=417]
Description: glycosyl transferase family 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-21   75.2   4.4    7.9e-21   75.2   4.4    2.9  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    4.9e-17   62.4   2.8    4.9e-17   62.4   2.8    2.6  3  Glyco_transf_4   Glycosyltransferase Family 4
    5.8e-17   62.4   0.5    1.3e-13   51.5   0.0    2.7  3  Glyco_trans_1_4  Glycosyl transferases group 1
    2.8e-14   53.0   0.0    4.3e-12   45.9   0.0    2.4  2  Glycos_transf_1  Glycosyl transferases group 1
      0.003   17.6   0.0     0.0055   16.7   0.0    1.4  1  Glyco_trans_4_2  Glycosyl transferase 4-like
  ------ inclusion threshold ------
      0.025   14.3   0.0      0.048   13.4   0.0    1.5  1  Glyco_transf_5   Starch synthase catalytic domain
      0.087   12.8   0.2       0.14   12.0   0.2    1.3  1  DUF4428          Domain of unknown function (DUF4428)


Domain annotation for each model (and alignments):
>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   4.4   3.1e-24   7.9e-21      34     160 .]      28     202 ..       2     202 .. 0.78
   2 ?   -6.1  12.8         7   1.8e+04       8      98 ..     255     394 ..     252     414 .. 0.36

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 3.1e-24
  Glyco_trans_4_4  34 eleedgvrvhrlpvprrps....pladlaal............ralrrllrqrrerpdvvhahspt...aglaarlarrrrgiplvvtlh.... 104
                      +l+++gv+v  lp+ r+++    ++++++al            + l rl+   + rpdv+h+h+p+   +++++r a  ++++p+v+t+h    
       KIR64309.1  28 QLRAAGVEV--LPFLRSSDeipsLPKTAKALlpispiyapraqQELSRLI--TEHRPDVLHLHNPYpllSPWVVRTAH-KHNVPVVQTVHnyrq 116
                      266778877..777777533333666666555666666644436677777..9***********7658899*******.*************** PP

  Glyco_trans_4_4 105 ...........................glllrrgsgavrrly...ralerrllrradavlvvseaeaeelralgvpadrvvvvpng 160
                                                  + + rgs+a+ +l+    a++r +++++d++++++ a+ ++lr++gvpa+r+vv png
       KIR64309.1 117 vcssglyfrdgvicqdcrgkalgvpaiVHRCYRGSRAQSALMattLAVHRGTWHSVDRFIALTSAVGDHLRDYGVPAERIVVKPNG 202
                      *********999999999988876655577889999999998765667*************************************8 PP

  == domain 2  score: -6.1 bits;  conditional E-value: 7
  Glyco_trans_4_4   8 aelaraLaarGheVtvltpapapg...............................apeleedgvrvh...........rlpvprrps...plad 56 
                      ++la+a aa+ ++Vt l p +++g                                        +v            + ++pr+p+   p a 
       KIR64309.1 255 RHLAEAAAAERADVTYLGPLDRAGvraaidasaviiaastwhdvlptviiealasG-------RPVLgtalggipylvGADAPREPAgtgPAAV 341
                      67777777777777777766666633334344444444333333333333222221.......1111111111111112224444421112222 PP

  Glyco_trans_4_4  57 laalralrrll...rqr........rerpdvvhahspt.aglaarlarrrrgip 98 
                      + a++++ r+    +++        ++ p  + a  p   ++aa+la+ +++++
       KIR64309.1 342 ATAAPGVGRVAlphGVKegetgwvvAPDPAAMAAALPVaRAGAAALAA-PARLR 394
                      223333333322222220111111123333333332211223333333.34444 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   2.8   1.9e-20   4.9e-17       4     166 ..      18     203 ..      15     205 .. 0.80
   2 ?   -1.7   0.1      0.98   2.5e+03      10      31 ..     256     277 ..     254     318 .. 0.59
   3 ?   -1.9   0.0       1.1   2.9e+03      53      72 ..     378     400 ..     333     405 .. 0.46

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 1.9e-20
  Glyco_transf_4   4 verhvleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaa.llalrrrlgi 97 
                      ++ v   + +L+++G+eV  + +++d+ +          +    +l+  + + +++ + l rl+ +++pDv+H h+p++l+   +++ ++++++
      KIR64309.1  18 ENTIVDAEITQLRAAGVEVLPFLRSSDEIPSLP-------KTAKALLPISPIYAPRAQQELSRLITEHRPDVLHLHNPYPLLSPwVVRTAHKHNV 105
                     566677777889999999999877766655555.......4455566677888999999*********************975413444458*** PP

  Glyco_transf_4  98 plVltvHglye..............................krllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVi 162
                     p+V tvH+                                  ++  + ++ l +   a+ r + +++dr+ia + a+ d+lr+ ygvp+e+i+V 
      KIR64309.1 106 PVVQTVHNYRQvcssglyfrdgvicqdcrgkalgvpaivhrCYRGSRAQSALMATTLAVHRGTWHSVDRFIALTSAVGDHLRD-YGVPAERIVVK 199
                     ****************************999999988876522333344445555566667779*******************.*********** PP

  Glyco_transf_4 163 pnGv 166
                     pnG+
      KIR64309.1 200 PNGI 203
                     ***9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.98
  Glyco_transf_4  10 eLaraLarrGheVtvvtpgddg 31 
                     +La+a a+   +Vt + p d+ 
      KIR64309.1 256 HLAEAAAAERADVTYLGPLDRA 277
                     5666666666666655444333 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.1
  Glyco_transf_4  53 rllrslaflrrlrrllkre...k 72 
                     +  r  a+++++ ++l+ e   +
      KIR64309.1 378 PVARAGAAALAAPARLRYErtfH 400
                     33333333333333444333334 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       5.8   1.5e+04      90     109 ..     100     118 ..      94     132 .. 0.61
   2 !   51.5   0.0   5.1e-17   1.3e-13       4     113 ..     216     329 ..     213     345 .. 0.81
   3 !    8.8   0.3   0.00078         2      87     128 ..     340     377 ..     329     379 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.8
                      HHHTT-EEEE-TGGGTTT-- CS
  Glyco_trans_1_4  90 amaaglpvVatdvggiaevv 109
                      a  + +pvV t     ++v+
       KIR64309.1 100 AHKHNVPVVQTVH-NYRQVC 118
                      6667888888855.445555 PP

  == domain 2  score: 51.5 bits;  conditional E-value: 5.1e-17
                      EEEES---GG.GTHHHHHHHHHHHH.HH.EEEEEES---..HHHHHHHTT-T.TEEEE---TH..HHHHHHH-SEEEE--...---SHHHHHHH CS
  Glyco_trans_1_4   4 ilfvGrleenvkgvdllleavpllrkkd.vrlvivGdgprpeeleelaagleerveftGfved..laellaaadvfvaPs...egfglkllEam 91 
                      +l++ rl+ ++kg+ lll+a+ +  +     l i+Gdg+ + +l e aa  +++v+++G ++   ++++++a+ v +a s     ++ +++Ea+
       KIR64309.1 216 FLYMARLS-PEKGLGLLLDAWRRHPDGSlGPLRIAGDGELR-HLAEAAAAERADVTYLGPLDRagVRAAIDASAVIIAAStwhDVLPTVIIEAL 307
                      7999***5.56**********9999555468*******854.677655533467*******3357***************88769********* PP

                      HTT-EEEE-TGGGTTT--TTSS CS
  Glyco_trans_1_4  92 aaglpvVatdvggiaevvgeng 113
                      a+g+pv  t++ggi+ +vg ++
       KIR64309.1 308 ASGRPVLGTALGGIPYLVGADA 329
                      ****************997654 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00078
                      HHHHHHTT-EEEE-TGGGTTT--TTSSEE--TT-HHHHHHHH CS
  Glyco_trans_1_4  87 llEamaaglpvVatdvggiaevvgengllvppgdpealaeai 128
                      ++  +a g+  Va +  g++e  ge+g++v+p dp+a+a+a+
       KIR64309.1 340 AVATAAPGVGRVALPH-GVKE--GETGWVVAP-DPAAMAAAL 377
                      4455556666677777.7788..9******86.8*****996 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   1.7e-15   4.3e-12      18     133 ..     216     327 ..     214     338 .. 0.88
   2 !    4.6   0.1     0.008        21     128     150 ..     354     375 ..     329     382 .. 0.68

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 1.7e-15
                      EEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESS.BSS-HHHH CS
  Glycos_transf_1  18 ilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsis.EgfGivll 110
                      +l+++rl++eKg+ ll++a+++ ++   +   l iaG+ge ++  ++ a+e   +++v++lg ++r  + + + ++ ++++ s++ + +++v++
       KIR64309.1 216 FLYMARLSPEKGLGLLLDAWRRHPD--GSLGPLRIAGDGELRHLAEAAAAE---RADVTYLGPLDRAGVRAAIDASAVIIAASTWhDVLPTVII 304
                      79*******************9885..79999*****77664444444333...368************************************* PP

                      HHHHTT--EEEETTTTHCHHCHT CS
  Glycos_transf_1 111 EAmaaglpviasnaggpaevvkd 133
                      EA+a+g pv+ ++ gg++ +v  
       KIR64309.1 305 EALASGRPVLGTALGGIPYLVGA 327
                      *****************999875 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.008
                      CHHCHTTTSEEEE-TT-HHHHHH CS
  Glycos_transf_1 128 aevvkdgetGllvkpnnaealae 150
                      ++ vk+getG++v+p  ++a+a+
       KIR64309.1 354 PHGVKEGETGWVVAPD-PAAMAA 375
                      44478888*******9.444443 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.1e-06    0.0055      63     107 ..      67     112 ..      24     117 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.1e-06
  Glyco_trans_4_2  63 af.klkklikkikPDvvhahyakpy...gllgslaarlsgvipvvlsvw 107
                      a+ +l +li++  PDv+h+h++ p+   ++++   a +++ +pvv++v+
       KIR64309.1  67 AQqELSRLITEHRPDVLHLHNPYPLlspWVVR--TAHKHN-VPVVQTVH 112
                      444899***************97663214444..335555.9*****99 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.9e-05     0.048     130     172 ..      77     114 ..      62     157 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
  Glyco_transf_5 130 gwkpdvihahDWhtalvpallkelykerglfkkiktvftiHNl 172
                     + +pdv+h+h  +  l p ++++++k+     ++++v t+HN 
      KIR64309.1  77 EHRPDVLHLHNPYPLLSPWVVRTAHKH-----NVPVVQTVHNY 114
                     458********************9864.....6*********3 PP

>> DUF4428  Domain of unknown function (DUF4428)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   5.7e-05      0.14      17      33 ..     124     140 ..     118     148 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.7e-05
     DUF4428  17 leDgyvCkdClkKlsef 33 
                 + Dg++C+dC +K+ + 
  KIR64309.1 124 FRDGVICQDCRGKALGV 140
                 69***********9555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2766.99
//
Query:       KIR64310.1  [L=286]
Description: DNA lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-17   62.7   0.0    3.6e-17   62.1   0.0    1.2  1  H2TH            Formamidopyrimidine-DNA glycosylase H2TH doma
    3.1e-17   63.3   0.0      7e-17   62.1   0.0    2.0  1  Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-termina
    4.7e-08   32.7   0.8    8.3e-08   31.9   0.8    1.4  1  zf-FPG_IleRS    Zinc finger found in FPG and IleRS
    0.00038   19.7   2.8    0.00074   18.8   2.8    1.5  1  zf-TFIIB        Transcription factor zinc-finger
  ------ inclusion threshold ------
      0.052   13.2   0.6       0.11   12.2   0.6    1.6  1  zf-RRN7         Zinc-finger of RNA-polymerase I-specific TFII
       0.07   11.9   0.0      0.089   11.5   0.0    1.1  1  FbpA            Fibronectin-binding protein A N-terminus (Fbp
       0.38   10.9   2.4          2    8.6   2.4    2.0  2  Zn-ribbon_8     Zinc ribbon domain
        1.9    8.6   4.7       0.63   10.1   0.2    2.2  2  DUF2752         Protein of unknown function (DUF2752)


Domain annotation for each model (and alignments):
>> H2TH  Formamidopyrimidine-DNA glycosylase H2TH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0   1.6e-20   3.6e-17       1      84 [.     138     219 ..     138     226 .. 0.93

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 1.6e-20
                 ---BTTSTTS-HHHHHHHHHT--SBHHHHHHCTTTSCS--HHHHHHHHHHTT--TTSBGGGS-HHHHHHHHHHHHHHHHHHHHT CS
        H2TH   1 LgpeplseaftvdalaerlkkkkrkiktlLLDqklvaGlGNiyadEvLfrakihPerlakslskeelellhqeikevlkeaiel 84 
                 Lgp++l+ +    ++a+rl++++ ++k +L Dq++ aG+GN y dE+L++ak++P  l  +l++ ++++lh+++++vl  a+ +
  KIR64310.1 138 LGPDALAADLP--TFAARLRSRRGQVKGVLTDQSVLAGVGNAYSDEILHAAKLSPFALTDRLTDDQVAALHEATRRVLGDAVSR 219
                 78888876665..5*******************************************************************974 PP

>> Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0   3.1e-20     7e-17       1      84 [.       1      87 [.       1     241 [. 0.90

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 3.1e-20
                    X--HHHHHHHHHHHHHHHTT-EEEEEEE-SSHHHTSTHHHHHTT-.SEEEEEEEEETTEEEEEE..EEEEEEE-TTTEEESS...... CS
  Fapy_DNA_glyco  1 MPElpEVetvrrglrrhllgkkiakvevlkdktlrgspaafakalkgrkiasvgrrGKyllleldggevlvvhlgmtGrllik....e 84
                    MPElpEVe ++ +lr++ + +++ +vev   ++l++  +   +a++gr++++++r+GK+l +++dg+ +lvvhl   G+l+++    +
      KIR64310.1  1 MPELPEVEALAGYLRERAVSRRVDRVEVAAISALKT-YDPAPAAVSGRTVTDARRHGKFLDVVFDGDLHLVVHLARAGWLHYResfpS 87
                    ****************************87788877.4445678*************************************9644441 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.8   3.7e-11   8.3e-08       1      28 [.     243     270 ..     243     272 .. 0.96

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 3.7e-11
                   TSB-TTT--BBEEEECTTEEEEE-TTTT CS
  zf-FPG_IleRS   1 GepCpRCwryiervgqagrstyfCprCq 28 
                   G pCp+C+ ++++v++a  s  +Cp+Cq
    KIR64310.1 243 GLPCPVCGDTVREVSFADSSLQYCPTCQ 270
                   89************************** PP

>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   2.8   3.3e-07   0.00074       2      26 ..     246     270 ..     245     270 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.3e-07
    zf-TFIIB   2 CPkCqdeleeserggveidyCpqCr 26 
                 CP+C+d+ +e+ + +  ++yCp C+
  KIR64310.1 246 CPVCGDTVREVSFADSSLQYCPTCQ 270
                 ************************6 PP

>> zf-RRN7  Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6   4.9e-05      0.11       2      29 ..     241     271 ..     240     271 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.9e-05
     zf-RRN7   2 ekgppCgvCgc..rsftl.ddGfyyCrrCht 29 
                 ++g pC+vCg   r++ + d  + yC  C t
  KIR64310.1 241 RTGLPCPVCGDtvREVSFaDSSLQYCPTCQT 271
                 6799********9999999999999999976 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     4e-05     0.089     176     242 ..     148     216 ..     132     240 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4e-05
                 HHHHHHHHHS.XXXHHHHH..HHBTTXXHHHHHHHHTTXSSSH...............HHHHHHHHTXX CS
        FbpA 176 eefkellskkekdlvkaLv..kafqGlspllaeelleragldketsakelseedlerlyealqelleel 242
                   f ++l+   ++++  L   + + G++++++ e+l+ a+l +   ++ l+++++ +l+ea +++l + 
  KIR64310.1 148 PTFAARLRSRRGQVKGVLTdqSVLAGVGNAYSDEILHAAKLSPFALTDRLTDDQVAALHEATRRVLGDA 216
                 5666666665566666664115689*************************************9998665 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2    0.0069        15      28      39 ..     245     256 ..     237     257 .. 0.81
   2 ?    8.6   2.4   0.00091         2       8      33 ..     246     270 ..     244     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0069
  Zn-ribbon_8  28 aCPeCgsevrrv 39 
                  +CP Cg +vr v
   KIR64310.1 245 PCPVCGDTVREV 256
                  5*****999975 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00091
  Zn-ribbon_8   8 CeeCghefevlqsisdapltaCPeCg 33 
                  C  Cg +  ++  ++d++l+ CP+C+
   KIR64310.1 246 CPVCGDTVREVS-FADSSLQYCPTCQ 270
                  999**7777775.78999999****7 PP

>> DUF2752  Protein of unknown function (DUF2752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00028      0.63       4      15 ..     239     250 ..     237     252 .. 0.86
   2 ?   -0.7   0.7       0.7   1.6e+03      10      14 ..     265     269 ..     264     272 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00028
     DUF2752   4 kaltGipCPGCG 15 
                 +a tG+pCP CG
  KIR64310.1 239 HARTGLPCPVCG 250
                 678********* PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.7
     DUF2752  10 pCPGC 14 
                 +CP+C
  KIR64310.1 265 YCPTC 269
                 8**** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2414.47
//
Query:       KIR64311.1  [L=527]
Description: UDP-phosphate galactose phosphotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-65  218.0   0.0    1.4e-64  217.1   0.0    1.5  1  Bac_transf     Bacterial sugar transferase
    5.1e-09   36.4   0.1      9e-09   35.6   0.1    1.4  1  CoA_binding_3  CoA-binding domain


Domain annotation for each model (and alignments):
>> Bac_transf  Bacterial sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.1   0.0   1.6e-68   1.4e-64       1     183 [.     335     521 ..     335     522 .. 0.94

  Alignments for each domain:
  == domain 1  score: 217.1 bits;  conditional E-value: 1.6e-68
  Bac_transf   1 KrlfDivlsllalillsplllvialliklessggpvffkqkRvGkngkpFkiyKFRsmvkdaekkl..........gavvklkndpritkvGrflRkts 89 
                 K l+D v++ l+l+ll+p++l+i ++i+l+ ++gpvff+q RvG++g++F+++KFR+m++dae++l          g  +k+k+dpr+ +vGrflR++s
  KIR64311.1 335 KNLMDRVAAGLGLLLLVPVFLAIGVAIRLS-DPGPVFFRQPRVGHEGRTFRVWKFRTMYVDAEDRLaglvdqnetdGMLFKMKHDPRVFPVGRFLRASS 432
                 789****************9********99.566***************************************************************** PP

  Bac_transf  90 lDELPqlinVLkGdMslVGpRPelpeeveeeieeyeee.eerlkvkPGltGlaqvnsgrselsleeklelDleYvenlslllDlkillktvkavl 183
                 lDELPqlinVL G+MslVGpRP++ +      +      ++rl v+PG+tGl+qv sgrs+ls++e ++lDl+Yv+n+sl++Dl+il++tv +vl
  KIR64311.1 433 LDELPQLINVLWGEMSLVGPRPLPADD----GDFL-GDvRRRLLVRPGMTGLWQV-SGRSDLSWDEAVRLDLYYVDNWSLAYDLSILWRTVGVVL 521
                 *************************93....2223.222577*************.88899******************************9997 PP

>> CoA_binding_3  CoA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.1     1e-12     9e-09      16     171 ..     135     295 ..     123     299 .. 0.72

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 1e-12
  CoA_binding_3  16 rlllrvlsawllvllllallsfslkdafSRlwlaywavvgl.vllivsrllvravlrrlrrn....grnerrvvavgggeelakqiranpelgfrv 106
                    ++++rv++a ++v +++ +++f++k+++SR+ ++ +a++g+ vl+++ r+l+r +l ++rr+    g++ + v+  + + e++ ++++np++g  +
     KIR64311.1 135 DEFKRVIRAGVAVAATVSFIAFATKTDLSRYTVG-FALLGAlVLILLGRILARFTLHAVRRRvgqaGHRMVLVGTLPECLEVYTAVTRNPSAGLVP 229
                    6899**************************9876.55444436776677776666666666631114444666688899999*************9 PP

  CoA_binding_3 107 vgvfddrddarseev.agvpvlgnladlveyvretrvdevylaLplsaea.rilrlvkelrddpvni 171
                    v++  ++  a+   +   vpv    +d++++vre   d + ++ + sae+ ++ rl  +l+ + v++
     KIR64311.1 230 VAIHITDGYAAARGIqTPVPVYA-GRDVLALVREVGGDTIAVCGSASAEPgELRRLAWQLEGSGVDL 295
                    97766665444443324666654.4678888888888888888888887646777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3371.94
//
Query:       KIR64312.1  [L=407]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-23   82.8   0.0    2.5e-23   82.2   0.0    1.3  1  His_kinase   Histidine kinase
    2.5e-08   34.4   0.0    4.5e-08   33.6   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    2.3e-05   24.4   0.0    6.9e-05   22.8   0.0    1.8  1  HATPase_c_2  Histidine kinase-like ATPase domain
     0.0069   16.2   0.0      0.012   15.4   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
  ------ inclusion threshold ------
      0.072   13.7   0.4       0.14   12.7   0.4    1.6  1  GAF          GAF domain
      0.097   13.0   0.6       0.26   11.7   0.6    1.7  1  GAF_3        GAF domain


Domain annotation for each model (and alignments):
>> His_kinase  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.0   8.3e-27   2.5e-23       1      78 []     193     271 ..     193     271 .. 0.94

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 8.3e-27
  His_kinase   1 aelkaLqaqinPHFlfNtLnsiqslaeedpeeaeemlekLskllrysleseee.vtLeeElellesYlelqklrfgdrl 78 
                 ae++aL+aqi+PHF++N+L++i s++++dpe+a+e++ +++++ rys++ + e +tL+eEl+ +++Yl+++++rfgdrl
  KIR64312.1 193 AEVRALRAQISPHFIYNALTAIGSFVRTDPERARELILEFAEFTRYSFRAHGEfTTLAEELRSIDRYLTIERARFGDRL 271
                 699***********************99********************65667566*********************96 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.5e-11   4.5e-08      10     109 ..     291     397 ..     286     400 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.5e-11
                 HHHHHHHHHHH..HSTTTEEEEEEEEEE..TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHH.HHHHTTTEEEE..EEETTTE CS
   HATPase_c  10 isnlvdNavkf..atkageieveikase..ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkk.lvelmgGeiwv..esepgrG 101
                 ++ lv+Nav++  + k g + v+i+a++   + +i+veD+G G+++  l    + +  ++s+ ++  g ++Gls v++ l + +g ++ +  e+  g G
  KIR64312.1 291 LQPLVENAVRHglSRKPGPGMVSIEARDagAECHITVEDDGVGMDPTTLTAGIAELAGAGSDPTDDPGQHVGLSNVDErLRSAFGDRFGLvvETGLGSG 389
                 6779*******66559999999999855679*****************9944445555677778889***********88889998777644666699* PP

                 EEEEEEEE CS
   HATPase_c 102 ttftftlp 109
                 t++ +++p
  KIR64312.1 390 TKVSMRVP 397
                 ***99988 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.3e-08   6.9e-05      39      88 ..     294     344 ..     288     364 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.3e-08
  HATPase_c_2  39 actNavehayleap.egpvevrlesdeealtvevaDsGpgfdpetlpdpte 88 
                  ++ Nav+h+  ++p  g v++++++++ +++++v+D+G g dp+tl  + +
   KIR64312.1 294 LVENAVRHGLSRKPgPGMVSIEARDAGAECHITVEDDGVGMDPTTLTAGIA 344
                  678***********99***************************99877655 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.1e-06     0.012      10      57 ..     294     347 ..     287     375 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.1e-06
  HATPase_c_3  10 lvdNsldAdaen......vkievnknrgktgeivieDdGkGmseeelknal.rla 57 
                  lv+N++     +      v+ie+ +  g++  i++eDdG Gm++ +l  ++ +la
   KIR64312.1 294 LVENAVRHGLSRkpgpgmVSIEARDA-GAECHITVEDDGVGMDPTTLTAGIaELA 347
                  66677665555557777799999996.799***************9998542454 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   4.8e-05      0.14      54     132 ..     109     181 ..      34     182 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.8e-05
                 HHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEETTEEEEEEEEEESSS...CSHHHHHHHHHHHHHHHHHH CS
         GAF  54 qvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPlvndgelwGllvlhnpsp...pftreelellqvladqvava 132
                 ++++ g++ v+    + + ++++          +r ++v+Pl++dg+++G+l ++   p      ++ le +   ++q+a+a
  KIR64312.1 109 RAASGGRSTVLG---EAELHCDRV------DCPVRGAVVAPLRADGRVVGALIAVADGPpapGLVQATLETAHWAGNQLALA 181
                 555668888888...888888862......47899*******************9955534366888888888777777765 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6   8.6e-05      0.26      12     125 ..      67     180 ..      59     181 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.6e-05
       GAF_3  12 llvkllgaevgalllldedgnklqvaagw.dgkpalsesldedsalarralssgevvsepsfaeedg....lpdraalavPLvagr.qviGvlalastk 104
                 ++v+ l+a vga +l  +d++ l +  g  ++++++   l    a+arra +sg+  ++++ ae  +    +p r a+++PL+a + +v+G l +  ++
  KIR64312.1  67 KAVRHLRALVGAAGLALTDRDALLALDGRgTHHADQ---L---VAAARRA-ASGGRSTVLGEAELHCdrvdCPVRGAVVAPLRA-DgRVVGALIAVADG 157
                 567777777777777777777776665553333333...2...2344444.55666777665553333334999**********.66****99986555 PP

       GAF_3 105 pra..fdaedlelleslArqiat 125
                 p a  + +++le     ++q+a+
  KIR64312.1 158 PPApgLVQATLETAHWAGNQLAL 180
                 54446777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3021.69
//
Query:       KIR64313.1  [L=253]
Description: LytR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-23   80.8   0.0    1.1e-22   80.1   0.0    1.4  1  LytTR            LytTr DNA-binding domain
    1.8e-22   79.6   0.0    2.9e-22   79.0   0.0    1.3  1  Response_reg     Response regulator receiver domain
  ------ inclusion threshold ------
       0.14   13.1   0.9        1.3   10.1   0.1    2.2  2  Methyltransf_24  Methyltransferase domain


Domain annotation for each model (and alignments):
>> LytTR  LytTr DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   1.8e-26   1.1e-22       3      97 ..     151     243 ..     149     244 .. 0.95

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 1.8e-26
       LytTR   3 iilvplddilyieaeekyvtlvteneeylfrgtLkeleeklppdsffrvhRsylVnlkkikeidrdfngtleltlkngeklpvSrrylkelkell 97 
                 + ++p + ++++ea+++y +l+t+++++l+r +L +l e++++ +f+r+hRsylV+lk i e++   n+++ ++++ +++lpvSrr+++elk++l
  KIR64313.1 151 TRMLPRSAVRWVEAQGDYARLHTADGSHLVRVSLATLAERWADAGFVRIHRSYLVQLKLIAELRLV-NSGYVVVID-STELPVSRRHTRELKDKL 243
                 678999**********************************************************88.668888888.***************987 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0   4.8e-26   2.9e-22       1     111 [.       9     118 ..       9     119 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 4.8e-26
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   vl vdD+p +++ l+  l+ +  + + ++a d++eal+ l+  +vd+++lDi+mpg+dG+el++ +r+  + + ++++ta+++   av+a+++ga d
    KIR64313.1   9 VLAVDDEPPALDELAYHLRaDPRVARLHTAGDATEALRVLRDADVDVVFLDIRMPGLDGMELARVLRRFARPPAIVFVTAYDD--GAVDAFDLGATD 103
                   899****************999999*******************************************************998..99********** PP

                   EEESSG-HHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkal 111
                   ++ Kp++ e+L + l
    KIR64313.1 104 YVRKPVRAERLAESL 118
                   ***********9876 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00021       1.3      25     102 ..       8      85 ..       5      89 .. 0.79
   2 ?    1.4   0.1      0.11   6.4e+02      45      77 ..     163     199 ..     109     227 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00021
  Methyltransf_24  25 rlvavdhdpgaeeaaalareaglddr.vrli.kadseealaslaagsiDllfiDgghaaeavledleallprlapggvvl 102
                      r++avd +p   + ++la  +  d r +rl+  +d+ eal+ l++ ++D++f+D    + + +e  ++l++  +p ++v+
       KIR64313.1   8 RVLAVDDEP--PALDELAYHLRADPRvARLHtAGDATEALRVLRDADVDVVFLDIRMPGLDGMELARVLRRFARPPAIVF 85 
                      577888888..567777777666666356654578899*****************9999998888888888888888886 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
  Methyltransf_24  45 aglddrvrlikadseeala.sla...agsiDllfiDg 77 
                      +   d++rl+ ad +++++ sla   +++ D  f+  
       KIR64313.1 163 EAQGDYARLHTADGSHLVRvSLAtlaERWADAGFVRI 199
                      4556777777777755444322222244444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1694.10
//
Query:       KIR64314.1  [L=236]
Description: chemotaxis protein CheY [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-25   89.7   0.0    2.4e-25   88.9   0.0    1.4  1  Response_reg     Response regulator receiver domain
    2.3e-22   78.9   0.0    4.8e-22   77.8   0.0    1.5  1  Trans_reg_C      Transcriptional regulatory protein, C termin
     0.0082   16.0   0.3      0.026   14.4   0.3    1.9  1  DNAPolymera_Pol  DNA polymerase catalytic subunit Pol
  ------ inclusion threshold ------
      0.038   13.9   2.1       0.31   11.0   0.1    3.0  3  MarR_2           MarR family
      0.042   13.9   0.0        0.3   11.1   0.0    2.3  2  B12-binding      B12 binding domain
      0.052   13.7   0.0       0.46   10.7   0.0    2.3  3  HGTP_anticodon   Anticodon binding domain
      0.087   13.8   0.4       0.25   12.3   0.0    2.0  2  LytR_C           LytR cell envelope-related transcriptional a


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0   9.3e-29   2.4e-25       1     111 [.       6     125 ..       6     126 .. 0.96

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 9.3e-29
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTT..........SEEEEEESSTSHHHHH CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpe..........lpviiltahseeedav 87 
                   +l+v+D+++++e ++  l+ eg+ +v++a dg  a++ +++ ++dl++lD+++pg dGle++++i++ +p+          +pv++lta+++e+d+ 
    KIR64314.1   6 ILVVEDERTIAESVAARLRAEGF-TVETAGDGPTAVARFRAWQPDLVVLDVMLPGFDGLEVCRRIQAGPPDataavrahrpVPVLMLTARDDETDLL 101
                   8**********************.*******************************************99666777788888**************** PP

                   HHHHCTESEEEESSG-HHHHHHHH CS
  Response_reg  88 ealkagaddflsKpfdpeeLlkal 111
                    +l +gadd+l+Kpf+ +eL +++
    KIR64314.1 102 VGLAVGADDYLTKPFSLRELAARV 125
                   ********************9987 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   1.9e-25   4.8e-22       3      77 .]     163     232 ..     161     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 1.9e-25
                  EEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   3 eveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  ev+ltp+ef+lL  L+ +p+ v++re+Ll  vwg  e + +rtvd+h++ LR+kL++     +lI+tv+gvGY l
   KIR64314.1 163 EVHLTPTEFDLLVHLAGRPRTVLPRERLLADVWGWAEGSGTRTVDSHVKALRRKLGA-----DLIRTVHGVGYAL 232
                  89*******************************************************.....8**********86 PP

>> DNAPolymera_Pol  DNA polymerase catalytic subunit Pol
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.3     1e-05     0.026       2      18 ..      18      34 ..      17      39 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
  DNAPolymera_Pol  2 dvaaRlrsagFgtigaG 18
                     +vaaRlr++gF+   aG
       KIR64314.1 18 SVAARLRAEGFTVETAG 34
                     8***********54444 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.6   9.3e+03      43      56 ..      21      34 ..      19      36 .. 0.67
   2 ?    1.5   0.1      0.11   2.9e+02      20      33 ..     110     127 ..      86     147 .. 0.70
   3 ?   11.0   0.1   0.00012      0.31       3      43 ..     166     207 ..     164     220 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.6
                HHHHHTTSEEEEES CS
      MarR_2 43 krLvaaGLverrpg 56
                +rL a G+ ++++g
  KIR64314.1 21 ARLRAEGFTVETAG 34
                67888887777665 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
                 S....EEEHHHHHHHHTS CS
      MarR_2  20 r....dltvgelarrlgl 33 
                      +++ +ela+r ++
  KIR64314.1 110 DyltkPFSLRELAARVHV 127
                 155656899999999887 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00012
                 --HHHHHHHHHHHCTTTS..EEEHHHHHHHHTSSHHHHHHHHH CS
      MarR_2   3 ltpaqarvLaaLgrrpgr..dltvgelarrlglsksavsrilk 43 
                 ltp+++++L +L+ rp+   + + + la+ +g   ++ +r+++
  KIR64314.1 166 LTPTEFDLLVHLAGRPRTvlP-RERLLADVWGWAEGSGTRTVD 207
                 8***************76431.455566666666666666665 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012       0.3      18      66 ..      17      61 ..      13      80 .. 0.82
   2 ?   -0.6   0.0      0.51   1.3e+03       8      37 ..     141     170 ..     134     195 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
  B12-binding 18 avlaaalrdagfeVqllganvenedivaairaekpdvvglSalltsqle 66
                  ++aa lr++gf V+  g      + va+ ra++pd+v+l + +   ++
   KIR64314.1 17 ESVAARLRAEGFTVETAGDGP---TAVARFRAWQPDLVVLDV-MLPGFD 61
                 589***********9887666...89**************99.665555 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.51
  B12-binding   8 vggdlhplGlavlaaalrdagfeVqllgan 37 
                  ++  + ++ +++  + +++ag+eV+l+  +
   KIR64314.1 141 AALTVGDVEINQAERRVSRAGVEVHLTPTE 170
                  556666777888888889999999987554 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00018      0.46      15      49 ..      13      47 ..       5      49 .. 0.86
   2 ?   -2.2   0.0       1.9   4.9e+03      56      80 ..     103     127 ..      94     140 .. 0.70
   3 ?   -0.6   0.0      0.58   1.5e+03      53      66 ..     139     152 ..     128     167 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00018
                    HHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHH CS
  HGTP_anticodon 15 eeyakklaeeLraagirvelddsnesigkkiread 49
                     + a+++a++Lra+g+ ve   ++ +   ++r ++
      KIR64314.1 13 RTIAESVAARLRAEGFTVETAGDGPTAVARFRAWQ 47
                    5789***************************9986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.9
                     EEEE-HHHHHHTEEEEEETTTCEEE CS
  HGTP_anticodon  56 avvvGekelekgtvtvrdrdtreqe 80 
                      + vG++++ ++  ++r+++ r ++
      KIR64314.1 103 GLAVGADDYLTKPFSLRELAARVHV 127
                     5678888888888888888777664 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.58
                     -SEEEEE-HHHHHH CS
  HGTP_anticodon  53 ipfavvvGekelek 66 
                      p a++vG+ e+++
      KIR64314.1 139 APAALTVGDVEINQ 152
                     57788888888844 PP

>> LytR_C  LytR cell envelope-related transcriptional attenuator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.8e-05      0.25      13      39 ..      13      39 ..      10     109 .. 0.60
   2 ?   -2.1   0.1       3.1   7.8e+03      56      56 ..     139     139 ..     119     167 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.8e-05
      LytR_C 13 sGlAarvadaLeerGftvgevgnagna 39
                + +A++va+ L+++Gftv ++g+ ++a
  KIR64314.1 13 RTIAESVAARLRAEGFTVETAGDGPTA 39
                568*****************6655554 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.1
      LytR_C  56 k 56 
                  
  KIR64314.1 139 A 139
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1801.65
//
Query:       KIR64315.1  [L=520]
Description: hypothetical protein TK50_00995 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-59  200.4  12.7    1.8e-59  200.4  12.7    2.4  2  DUF4173       Domain of unknown function (DUF4173)
     0.0037   16.9   9.1     0.0074   15.9   9.1    1.6  1  DUF4153       Domain of unknown function (DUF4153)
  ------ inclusion threshold ------
        5.6    5.6   5.1         13    4.5   0.1    2.2  2  GPDPase_memb  Membrane domain of glycerophosphoryl diester ph


Domain annotation for each model (and alignments):
>> DUF4173  Domain of unknown function (DUF4173)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   3.8     0.043   2.5e+02     114     150 ..     106     142 ..     103     149 .. 0.87
   2 !  200.4  12.7     3e-63   1.8e-59       2     189 ..     278     467 ..     277     468 .. 0.99

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.043
     DUF4173 114 fllllalvlllvlvkilkrkfklfraalvaaavlllv 150
                  l++ a+ ++lv v  ++ + +lf  +l+aa+v+ ++
  KIR64315.1 106 RLVWAAATIALVSVGYVRAAGWLFALCLLAAVVTGAL 142
                 5899************************999998665 PP

  == domain 2  score: 200.4 bits;  conditional E-value: 3e-63
     DUF4173   2 llnllyllfvliqiayLfggeekvslpegltyaeyArrGffqLlavtllnllvvlvalrlakrekakkrkllrvlllvlialtlvlvasallRmllYie 100
                 ll++l+++fvl+q+a+Lfgg+++v +++gl+ya+yAr Gf+qLlav++l+llv++ a r+a+r+++++r l+rvll++l+al+lv+vasal+Rm++Y +
  KIR64315.1 278 LLDALFAAFVLVQLAVLFGGSAHVLRTAGLSYAQYARGGFWQLLAVSALTLLVIAGAARWAPRATRADRVLVRVLLGTLTALSLVVVASALYRMQVYAD 376
                 799************************************************************************************************ PP

     DUF4173 101 ayglTrlRilvlvfllllalvlllvlvkil.krkfklfraalvaaavlllvlafinpdalIarynverye.tgklDvdyLssLsadavpal 189
                 ayg TrlR++v++++l+l+++++lv v++l  r+ +l+  ++ +a+++ll+la +npd+lIa++nv+r + tg++Dv+yLs Lsadavpal
  KIR64315.1 377 AYGATRLRLVVAAVELWLGALFVLVGVAVLlLRAGRLPVLVVGTAVLALLGLAAVNPDRLIAERNVDRHRqTGRIDVSYLSGLSADAVPAL 467
                 *******************************************************************9999******************98 PP

>> DUF4153  Domain of unknown function (DUF4153)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   9.1   1.2e-06    0.0074      59     193 ..     276     426 ..     189     447 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-06
     DUF4153  59 kvLlkfillplviiYlliLylYlikilflaelPkGlva....llvllylallllilllllrsek...kwlklflrvfplllipllvllfvaiwiRis.. 148
                  +Ll+ +++  v++ l++L+   + +l +a l+  + a    + +l+++al ll++  ++r +    ++ + + rv+   l+ l  + + +  +R++  
  KIR64315.1 276 LALLDALFAAFVLVQLAVLFGGSAHVLRTAGLSYAQYArggfWQLLAVSALTLLVIAGAARWAPratRADRVLVRVLLGTLTALSLVVVASALYRMQvy 374
                 578888899999999999999999999999999999887777666666666666655555333311133444455555555555544455555565433 PP

     DUF4153 149 ..qYGlTeeRyyvlllaiwl..llvlvylll...rkkqknnialllaillll 193
                   +YG T  R++v+ + +wl  l+vlv + +   r  + +++++ +a+l+ll
  KIR64315.1 375 adAYGATRLRLVVAAVELWLgaLFVLVGVAVlllRAGRLPVLVVGTAVLALL 426
                 3389******999888888853333333222333555555444444444443 PP

>> GPDPase_memb  Membrane domain of glycerophosphoryl diester phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1    0.0021        13      69     124 ..     276     331 ..     270     333 .. 0.89
   2 ?    2.4   1.4    0.0092        55     218     269 ..     350     401 ..     340     425 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0021
  GPDPase_memb  69 LillllllllliylefalLilgiqeilkkekislkalfketfkklkklrgvsllfl 124
                   L ll  l+++++ +++a+L+ g+ + l+   +s+ +  +  f +l  ++  +ll++
    KIR64315.1 276 LALLDALFAAFVLVQLAVLFGGSAHVLRTAGLSYAQYARGGFWQLLAVSALTLLVI 331
                   667778999****************************9999999999999998887 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.0092
  GPDPase_memb 218 lllliliivivltvilsllllllqllldkl.pkkvslilaiinltllqiisli 269
                   ++ll ++ +++  v++   l+ +q++ d    +++ l++a + l l  +++l+
    KIR64315.1 350 RVLL-GTLTALSLVVVASALYRMQVYADAYgATRLRLVVAAVELWLGALFVLV 401
                   4444.45555666667778899******9999999999999988755444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.22s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3798.55
//
Query:       KIR64316.1  [L=155]
Description: hypothetical protein TK50_01000 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-06   26.2   1.2    8.2e-06   25.7   1.2    1.2  1  DUF485    Protein of unknown function, DUF485
  ------ inclusion threshold ------
      0.088   12.1   0.3       0.12   11.7   0.3    1.2  1  CCB1      Cofactor assembly of complex C subunit B
       0.25   11.0   4.4       0.18   11.4   3.0    1.5  2  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> DUF485  Protein of unknown function, DUF485
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   1.2   1.4e-09   8.2e-06       8      79 ..      72     142 ..      68     152 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.4e-09
      DUF485   8 eLvrkrrrfafpltaiflvvYfgfvllvafapdllatkvgeg.nitvglllgllqivltflltglYvrrAnre 79 
                  Lvr++ ++a+ l++++l+   g++ l+a+ap++    v+ g n+++ lllgl+ + + +++ ++Yv+ A+r+
  KIR64316.1  72 GLVRAQLALALRLSLVVLIGLGGLPWLFAIAPSVGRVTVF-GiNLPW-LLLGLVSFPFLIAVGWAYVWLAERN 142
                 59999***********************************.845544.578*******************996 PP

>> CCB1  Cofactor assembly of complex C subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3     2e-05      0.12      69     133 ..      69     144 ..      56     154 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2e-05
        CCB1  69 tfeGlvapslflAifLtllaalgllclaLVlsilvpelgn........lflllvlls.Pl...AgvfYwkkakrkeq 133
                   +Glv+++l lA+ L+l+ ++gl  l   ++i+   +g          +lll l+s P+    g+ Y+  a+r+eq
  KIR64316.1  69 LVRGLVRAQLALALRLSLVVLIGLGGLPWLFAIAPS-VGRvtvfginlPWLLLGLVSfPFliaVGWAYVWLAERNEQ 144
                 569************************998777543.3332333334367777777766556579999999999998 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.35   2.1e+03      71      92 ..      41      61 ..      27      85 .. 0.56
   2 ?   11.4   3.0   3.1e-05      0.18       7      64 ..      87     151 ..      76     155 .] 0.69

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.35
     DUF4131 71 veGvvaslpeltgsgtrfvlev 92
                v ++v s+ e +++++r +l+ 
  KIR64316.1 41 VLAEV-SRREPDADRARAELAQ 61
                44444.5555555555555552 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.1e-05
     DUF4131   7 lvllalllllllllllllrr.......rprrrvllllllllllallgfalrapqpnandlsqlle 64 
                 +vl++l++l  l++++ +         +  +  l+l+++ +l+a+++++++ +++n++d+ +l++
  KIR64316.1  87 VVLIGLGGLPWLFAIAPSVGrvtvfgiNLPWLLLGLVSFPFLIAVGWAYVWLAERNEQDFTDLVQ 151
                 445555555555555544337777665555666888888899***************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1093.19
//
Query:       KIR64317.1  [L=552]
Description: transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-41  140.3  30.8    3.3e-26   92.1  12.6    2.4  2  SSF       Sodium:solute symporter family
  ------ inclusion threshold ------
      0.063   13.1   0.4      0.063   13.1   0.4    3.6  3  B12D      NADH-ubiquinone reductase complex 1 MLRQ subunit


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1  12.6   3.6e-30   3.3e-26       1     167 [.      34     199 ..      34     206 .. 0.97
   2 !   53.6  10.2   1.7e-18   1.6e-14     202     406 .]     282     476 ..     257     476 .. 0.83

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 3.6e-30
         SSF   1 yflagrsltgfvlglslaasnisaasfvGlaGavaasGlavvllelgalllvlllllllaerlrnagalTlpdylskRfkgkrilvylsalslllvitl 99 
                 + +a+rs+ +  ++++++++++saasf+G+aG++ ++G++v+++ +g+  ++l lll++a  lr++ga+Tlpd+ + R++++r l+ l+   ++ +  l
  KIR64317.1  34 FLVASRSVSPTWNAAAIGGEYLSAASFLGVAGLILKYGVDVLWYPVGFAAGYLALLLFVAAPLRRSGAFTLPDFCEVRLGSRR-LRTLATAFVIFIGWL 131
                 789********************************************************************************.99****99999**** PP

         SSF 100 klsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivll 167
                 +l  +l g++  + ++ G  y ++ l++a++++  +++GG++A+++++  q  l l ++ + +i+ +l
  KIR64317.1 132 YLVPQLQGAGLTLATLTGAAYPVGALVVAVVVTANVALGGMRAITFVQAFQYWLKLTALAVPAIFLVL 199
                 *******************************************************9999998887665 PP

  == domain 2  score: 53.6 bits;  conditional E-value: 1.7e-18
         SSF 202 ltalslwlglvlGvaglphilvRflaakdakailkgvlkltivlilvligmisiilfaiklagavpkavgtevgvsniaypeLvvk.....llpnllaG 295
                  ++ sl l+  lG++glph+lvRf++  d++a+++  l  + ++++++++     l++       p++  t  g+++ +++ L  +     l + lla+
  KIR64317.1 282 FATYSLILATFLGTMGLPHVLVRFYTNPDGAAARRTTLVVLALVGVFYLL---PTLYGVLGRIYTPQLLVT--GQTDAVVVLLPGAalgdgLTGRLLAA 375
                 56788999****************************************99...556665555666766665..55566666665550011166666666 PP

         SSF 296 lllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeqkgvlklvelafaglasavlavillalfwkrv 394
                 l+ a ++Aa +st ++ll s + +++ D+  +    +       v+  r+++++ + +  +la++    +v ++v lafa++as + ++++l+++w  +
  KIR64317.1 376 LVAAGAFAAFLSTSSGLLTSVAGVISTDVLGR----G------SVRGFRLATVIAGGVPAALALNVSGLDVSQVVGLAFAVAASSFCPLLVLGIWWRGL 464
                 777778999*****************998543....3......47779999************************************************ PP

         SSF 395 neqGAlagliiG 406
                 +  GA ag+++G
  KIR64317.1 465 TDVGAAAGVLAG 476
                 *********998 PP

>> B12D  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4     7e-06     0.063       5      35 ..       6      36 ..       4      49 .. 0.83
   2 ?    2.1   0.1     0.018   1.6e+02       5      32 ..     284     310 ..     283     316 .. 0.94
   3 ?   -1.7   0.6      0.28   2.5e+03       6      19 ..     509     522 ..     508     523 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7e-06
        B12D  5 liPLfvfigagvggavfylvRllltnPDVrw 35
                ++P +v+++++++g  fy++Rl+ t +D+ +
  KIR64317.1  6 VVPAIVAVTLVTVGIGFYGLRLARTTSDFLV 36
                7899************************975 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.018
        B12D   5 liPLfvfigagvggavfylvRllltnPD 32 
                 ++ L++++ +g++g+  +lvR   tnPD
  KIR64317.1 284 TYSLILATFLGTMGLPHVLVRFY-TNPD 310
                 799********************.9999 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.28
        B12D   6 iPLfvfigagvgga 19 
                 +PL + ++++v+ a
  KIR64317.1 509 VPLAFTVMIAVSVA 522
                 7**********988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.21s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 4353.36
//
Query:       KIR64318.1  [L=254]
Description: ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-20   72.5   0.0    6.5e-20   72.0   0.0    1.2  1  ABC_tran  ABC transporter
    9.4e-09   35.5   0.1    0.00012   22.0   0.0    2.1  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
  ------ inclusion threshold ------
        0.1   12.9   0.0        0.2   11.9   0.0    1.5  1  SbcCD_C   Putative exonuclease SbcCD, C subunit
       0.23   12.0   0.0       0.33   11.4   0.0    1.1  1  AAA_23    AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   1.4e-23   6.5e-20       3     136 ..      25     166 ..      23     167 .. 0.95

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 1.4e-23
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeieka 88 
                  v+l++ +g+ ++++G+nGaGK+t l++  gll+p++G  ++ g+d+ + +   +++ +gv+p   +lf++l+ +e                d++++++
  KIR64318.1  25 GVDLDVPAGSFYGLLGPNGAGKTTTLSMAVGLLRPDAGGAWVLGHDVWT-DPVGAKQLLGVMPDGVRLFDRLSGAELlayhgllrgmdptVVDQRAAEL 122
                 699********************************************99.77788999**************988889***********999999**** PP

                 HHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  89 lsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 l+ l l +   t v      +S G+k+++ la+all  p+ll+lDEp+
  KIR64318.1 123 LDVLALGDAGRTLV----VDYSAGMKKKIGLACALLHGPRLLVLDEPF 166
                 ********888988....9****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   3.4e-05      0.15       1      22 [.      35      56 ..      35      71 .. 0.82
   2 !   22.0   0.0   2.6e-08   0.00012     225     297 ..     127     196 ..      86     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.4e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                + +l GpNg+GK++ L    +l
  KIR64318.1 35 FYGLLGPNGAGKTTTLSMAVGL 56
                5689**********99766666 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 2.6e-08
      AAA_21 225 engdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTH 297
                   gd + + + + S G+k+ ++l+ all  +   +ll++DEp    +P   + + ++l ++    g+ vi+++H
  KIR64318.1 127 ALGDAGRTLVVDYSAGMKKKIGLACALLHGP---RLLVLDEPFEAVDPVSAALIRDILhRYVVG-GGTVIFSSH 196
                 5578888899999***************877...**************8888888888555555.9******** PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.4e-05       0.2      62      88 ..     155     181 ..     132     183 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.4e-05
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllell 88 
                 + +rl++LDE F+ +D+ s+a + ++l
  KIR64318.1 155 HGPRLLVLDEPFEAVDPVSAALIRDIL 181
                 679*************99988776665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.4e-05      0.33      23      36 ..      37      50 ..      26      53 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.4e-05
      AAA_23 23 lItGpNGaGKTTil 36
                 + GpNGaGKTT l
  KIR64318.1 37 GLLGPNGAGKTTTL 50
                678*********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1847.94
//
Query:       KIR64319.1  [L=84]
Description: hypothetical protein TK50_01020 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 588.26
//
Query:       KIR64320.1  [L=164]
Description: polyketide cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-12   48.1   4.0    1.6e-12   47.9   4.0    1.1  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
  ------ inclusion threshold ------
      0.044   14.0   0.2      0.066   13.4   0.2    1.5  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra


Domain annotation for each model (and alignments):
>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   4.0   1.8e-16   1.6e-12       3     135 ..       3     140 ..       1     146 [. 0.80

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 1.8e-16
                      EEEEEEEESS-HHHHHHHHTTTTGGG.GT-TTEEEEECSESTSSS...TTTEEEEECCCSSEEEEEEEEEETTTTEEEEEEE..SSS-TSEEEE CS
  Polyketide_cyc2   3 kvtvsvviaappekVwalvsdfenwp.rWhpevarveleggggpa...rgvegtvrvggrgtvreelvevdpegrllsyriv.kpvpvanyvat 91 
                       v++ +++++ppe ++a+ +  +  + rW+p+v++ + ++ g ++   +++ +t +  g  t++ e v + p + ++++++v +p+ ++ + + 
       KIR64320.1   3 VVESVITVPVPPELAFAVSQTVAPTRyRWDPFVREQHFTD-GATRpgkGVRTFTRSRHG-LTMVSEYVSFAP-PSHVGMKMVrGPWFFEMFAGG 93 
                      58999****************8777779******998887.444445433345666777.79**********.********99*********** PP

                      EEEEECC.ET.EEEEEEEEEEE.E--TT--HHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  92 wtvtpdg.gg.trvtwtgefda.gplggpfekpaaakavkgdleagL 135
                      w+++p + +g +  tw+++f++ +++ +p+   +   ++++d+++ +
       KIR64320.1  94 WRFAPGPePGtSVATWRYHFRCrPAFLRPVAHRVGSWLLGRDIRRRI 140
                      *****9966746699******75666677776666666666666655 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   7.4e-06     0.066      64     115 ..      66     125 ..      10     142 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.4e-06
                     T.........EEECTTCCC..CCEEEEEEEECTECCEEECEEEEEEEEEEEE-SSCHHHHHHH CS
  Polyketide_cyc  64 e.........itfklvegd..fkslegkWtieslppnsggtrtkvalevdfkfaspllgalvg 115
                     e         + +k+v g+  f+ + g W+++++p+  g + +++++ ++ ++a  +l +++ 
      KIR64320.1  66 EyvsfappshVGMKMVRGPwfFEMFAGGWRFAPGPE-PGTSVATWRYHFRCRPA--FLRPVAH 125
                     2455555555567777775559*************5.45555555555555444..4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1216.87
//
Query:       KIR64321.1  [L=176]
Description: flavin reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-18   64.8   0.0    1.1e-17   64.5   0.0    1.1  1  Flavin_Reduct  Flavin reductase like domain


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0   6.2e-22   1.1e-17       2     154 ..      33     175 ..      32     176 .] 0.93

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 6.2e-22
                    TTS-EE-EEEEE.EETTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBCCGHHHHHHTCS...SCCCCCCCCCCCEEECTC CS
  Flavin_Reduct   2 rrvaqpvavvttsvpptsplgatlssftslsldPplvafslrlpsstadalkeagefvinllsesqealadafsqksgprtddksifagltweesp 97 
                    +r+a pv++ t+      p+g+t+ss      +P  ++  ++ +s+++ a+++ag+f++  l + +++lad+f++  + +      fa   w+e+ 
     KIR64321.1  33 GRLAAPVTLWTA----PGPAGLTVSSTLVAEGEPDRLLGLIDAESDLWAAVEAAGRFAVAPLGPPHRQLADRFAGLFP-SPGGL--FATGAWTET- 120
                    589********9....6678**************9999*************************************666.55555..********7. PP

                    CCSEEETTCSEEEEEEEEEEECCTTEEEEEEEEEEEEESTTECTTBEECCCCCEEEE CS
  Flavin_Reduct  98 tgapallgalasleCqvvgsvelgdhelfigeVvavkvgddadeepLlywrrryagl 154
                    +  p+ ++a ++  C++   +e+g   l+ + ++ + +  + d  pLl++r+ry++l
     KIR64321.1 121 EYGPVPADAAGWAGCRLDTAREYGWALLVEATIECIDLTREGD--PLLHYRGRYHEL 175
                    777**********************************999966..9********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       144  (0.00803168); expected 358.6 (0.02)
Passed bias filter:                      129  (0.00719505); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1314.46
//
Query:       KIR64322.1  [L=132]
Description: hypothetical protein TK50_01035 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-31  107.5   2.4    2.9e-31  107.3   2.4    1.0  1  DUF485           Protein of unknown function, DUF485
  ------ inclusion threshold ------
      0.032   13.9   0.0      0.056   13.2   0.0    1.4  1  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l
      0.053   13.6   0.5      0.068   13.2   0.5    1.1  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
      0.071   12.9   0.0       0.11   12.3   0.0    1.3  1  Phage_holin_2_3  Bacteriophage holin family HP1
        0.2   11.6   0.6       0.27   11.2   0.6    1.2  1  RseC_MucC        Positive regulator of sigma(E), RseC/MucC


Domain annotation for each model (and alignments):
>> DUF485  Protein of unknown function, DUF485
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   2.4   8.1e-35   2.9e-31       1      88 [.      31     118 ..      31     119 .. 0.97

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 8.1e-35
      DUF485   1 qaspkFqeLvrkrrrfafpltaiflvvYfgfvllvafapdllatkvgegnitvglllgllqivltflltglYvrrAnrefDplaeeir 88 
                 q+s +F+ L+r+ r f+fp+t++f+++Y ++v+l+a+a+d+++t+++ +ni+v+l++gllq+v+tfl+++lY+r+A+r++Dp a++ir
  KIR64322.1  31 QRSDEFAGLRRALRGFIFPMTVAFFLWYALYVILSAYARDFMGTRLFGSNINVALIFGLLQFVSTFLIAWLYSRFADRKIDPIADRIR 118
                 6899*******************************************55*************************************98 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.6e-05     0.056      33      62 ..      82     111 ..      70     123 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
  Phage_holin_2_4  33 elialvGlavAliGlLvnWyYkreanRRaa 62 
                      +++ ++Gl+  +  +L+ W Y r a+R+  
       KIR64322.1  82 NVALIFGLLQFVSTFLIAWLYSRFADRKID 111
                      455579*********************865 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.5   1.9e-05     0.068      30      95 ..      39     109 ..      34     124 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.9e-05
  Phage_holin_3_6  30 akragsgagllgaagvlallalllllvala...lala.a.lwlaalivaavllvlagvlalvglkklkkak 95 
                       +ra++g ++ +  ++++ +al ++l a a   ++   + + +   +++++l  +   l+++ +++++++k
       KIR64322.1  39 LRRALRGFIFPMTVAFFLWYALYVILSAYArdfMGTRlFgSNINVALIFGLLQFVSTFLIAWLYSRFADRK 109
                      589**************************878644433363344444456666666777777777777755 PP

>> Phage_holin_2_3  Bacteriophage holin family HP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.9e-05      0.11      25      47 ..      82     104 ..      64     109 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.9e-05
  Phage_holin_2_3  25 eWAiviGIicgvvTfliNwyykr 47 
                      ++A+++G++  v Tfli+w y r
       KIR64322.1  82 NVALIFGLLQFVSTFLIAWLYSR 104
                      58******************976 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.6   7.7e-05      0.27      60     119 ..      35     107 ..      30     114 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.7e-05
   RseC_MucC  60 eksllkaallvYllPllllilgallgsall.............gssellaalgallglvlgflivrllskrlk 119
                 e + l+ al  +++P+ + ++   + +++l             gs+  +a++++ll +v +fli++l+s+ + 
  KIR64322.1  35 EFAGLRRALRGFIFPMTVAFFLWYALYVILsayardfmgtrlfGSNINVALIFGLLQFVSTFLIAWLYSRFAD 107
                 66778889999999998887777777777678889999999988888899999*************9998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1049.20
//
Query:       KIR64323.1  [L=557]
Description: acetate permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-91  305.1  43.1    1.4e-90  304.1  43.1    1.5  1  SSF       Sodium:solute symporter family
  ------ inclusion threshold ------
       0.12   12.9   0.0       0.12   12.9   0.0    3.4  4  DUF2818   Protein of unknown function (DUF2818)


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.1  43.1   1.5e-94   1.4e-90       1     406 []      46     481 ..      46     481 .. 0.92

  Alignments for each domain:
  == domain 1  score: 304.1 bits;  conditional E-value: 1.5e-94
         SSF   1 yflagrsltgfvlglslaasnisaasfvGlaGavaasGlavvllelgalllvlllllllaerlrnagalTlpdylskRfkgkrilvylsalslllvitl 99 
                 ++ +grs  gf++g++++++++saasf+G+aG +a++G++++l+++g+l+++l++lll+ae lrn+g++T++d+l+ R +++   +  +a+s++ v ++
  KIR64323.1  46 FYAGGRSFSGFQNGMAIGGDYMSAASFLGIAGIIALYGYDGFLYSIGFLVAWLVALLLVAELLRNSGRYTMADVLAFRMRQRP-VRTAAAVSTITVSIF 143
                 89*********************************************************************************.999************ PP

         SSF 100 klsvdlvggaklielalGln.........yeta....vlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivllevG.gleslveklkeaap 184
                 +l +++vg+++l+ l+lG++           ta    +++++al+++Y+ +GG+  ++y+++++a+l++ gal+++++vl +    l+sl+  +++ + 
  KIR64323.1 144 YLLAQMVGAGALVALLLGIKpgttflgmdADTAkvatIIMVGALMIIYVTVGGMKGTTYVQIVKAFLLMTGALVMTLLVLAKYKfNLSSLLGDAAASSG 242
                 ************99887764222221111444333348999******************************************9999999999999998 PP

         SSF 185 kvvdl..........ltpdslkllrdpltalslwlglvlGvaglphilvRflaakdakailkgvlkltivlilvligmisiilfaiklagavpkavgte 273
                 k++ +          + +++++++ + ++ lsl+++lvlG+aglphil+Rf+++  aka++k+vl ++++++ +++++++++++a++l+g    a++++
  KIR64323.1 243 KGSAFlepglrygveVAGNATQTFYNKVDLLSLGIALVLGTAGLPHILIRFYTVPTAKAARKSVLWAIGIIGSFYLLTLALGFGAAALVGG--PAITAQ 339
                 88777789999997777999999*****************************************************************998..7999** PP

         SSF 274 vgvsniaypeLvvkllpnll.........aGlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeq 363
                 +++ n a+p+L+ kl+ ++l         ++++ av++A+i++++++l+l++ss++++D+Y++++++++a+e+++v+v+r+  lv+++++i+l + +++
  KIR64323.1 340 DKAGNTAAPQLAEKLGIDFLggdlggatmLAIIAAVAFATILAVVAGLTLASSSSLAHDFYANVIKNGQASERQEVRVARVSALVIGAVSIALSIYAQS 438
                 *************98766542221111116799****************************************************************** PP

         SSF 364 kgvlklvelafaglasavlavillalfwkrvneqGAlagliiG 406
                  +v++lv+lafa++as +l+ il +lfwkr+n++GA +++  G
  KIR64323.1 439 LNVAFLVALAFAVAASGNLPAILYSLFWKRFNTSGAVWAIYGG 481
                 **************************************98765 PP

>> DUF2818  Protein of unknown function (DUF2818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.48   4.3e+03      44      56 ..      20      32 ..      13      49 .. 0.49
   2 ?   -1.9   0.2      0.59   5.3e+03      30      53 ..     128     151 ..      95     154 .. 0.58
   3 ?   12.9   0.0   1.4e-05      0.12       6      59 ..     277     330 ..     272     340 .. 0.87
   4 ?   -1.6   0.2      0.47   4.3e+03       4      22 ..     443     464 ..     426     511 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.48
     DUF2818 44 vlylvvgllalll 56
                 l+lv ++++l++
  KIR64323.1 20 TLFLVFVAVTLAI 32
                3333333333333 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.59
     DUF2818  30 kaeKslalrllEllvlylvvglla 53 
                   + ++a+  + + ++yl++ +++
  KIR64323.1 128 PVRTAAAVSTITVSIFYLLAQMVG 151
                 334455666677777777777776 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 1.4e-05
     DUF2818   6 lllalvaANLPflserlflviplkkaeKslalrllEllvlylvvgllalllEar 59 
                 ++l+l +A LP++  r+++v  +k+a+Ks+ + +  +  +yl++++l++   a 
  KIR64323.1 277 IALVLGTAGLPHILIRFYTVPTAKAARKSVLWAIGIIGSFYLLTLALGFGAAAL 330
                 5667778****************************************9987655 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.47
     DUF2818   4 lllllalvaA...NLPflserl 22 
                 +l++la+ +A   NLP +   l
  KIR64323.1 443 FLVALAFAVAasgNLPAILYSL 464
                 3333333332233555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       947  (0.0528195); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 3540.24
//
Query:       KIR64324.1  [L=325]
Description: epimerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-51  174.1   0.0    1.8e-50  172.3   0.0    1.7  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    2.6e-46  158.0   0.0    3.4e-46  157.7   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.1e-07   31.3   0.0    1.4e-07   31.0   0.0    1.0  1  RmlD_sub_bind    RmlD substrate binding domain
    2.4e-07   30.1   0.0    3.1e-07   29.7   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    1.4e-05   25.0   0.0    2.2e-05   24.4   0.0    1.2  1  NAD_binding_10   NAD(P)H-binding
    0.00023   20.4   0.0      0.018   14.2   0.0    2.1  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0066   15.6   0.0        0.5    9.5   0.0    2.3  1  NAD_binding_4    Male sterility protein
  ------ inclusion threshold ------
      0.047   13.1   0.0      0.075   12.5   0.0    1.3  1  adh_short        short chain dehydrogenase
       0.25   10.9   0.1        0.5    9.9   0.1    1.7  1  NmrA             NmrA-like family


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.3   0.0   8.9e-54   1.8e-50       1     332 []      14     316 ..      14     316 .. 0.90

  Alignments for each domain:
  == domain 1  score: 172.3 bits;  conditional E-value: 8.9e-54
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG+aGf+ s+l++ L+++g +v+ +++  +  + ++++hl        ++n++l+++D++D    ++     ++d+++++A         + P 
     KIR64324.1  14 LVTGGAGFVPSHLVDTLVARGCTVVALDNFVT-GSKDNVAHLH------DKPNFTLVEADISDGLPTHHPALAERFDAIMHMASPASPTDFATLPV 102
                    9************************9976543.3456666665......4679**********999998888889********************* PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TT.....S-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTT CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEt.....tpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhespr 187
                    + ++v  ++tl+LL+ + a    + +rf+ aStsE YG+++e+pq+Et     +p+  rs Y  aK +++  +++y++  gl a + ++fn+++pr
     KIR64324.1 103 EILRVGSVATLHLLDRAVA----DGARFLMASTSEAYGDPKEHPQRETywgnvNPIGVRSVYDEAKRFSEAATMAYHRYRGLDAAIVRIFNTYGPR 194
                    ***************9855....568*********************99988899999************************************** PP

                    S-TTSCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH.......... CS
  GDP_Man_Dehyd 188 rgetfvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiewegkgeeevgra 283
                    + ++   r i+++++++++g+ ++++ G ++++R+  +v+D v+++ l+l + ++  ++++t ++ ++r+++el +   g t              
     KIR64324.1 195 MRPD-DGRAIPTFISQALRGE-PITVHGTGNQTRSICYVEDLVRGILLLLDSTQTGPVNCGTEHELTMRQLAELIVSLSGST-------------- 274
                    *998.99*************8.89999******************************************9999766655543.............. PP

                    ..TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHHHH CS
  GDP_Man_Dehyd 284 kesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvrem 332
                            ev+++++   + +++  d + a+e Lg++p v  e+++r++
     KIR64324.1 275 -------SEVTYVTRAADDPEMRRPDLTLARELLGYEPAVAPEDGLRRT 316
                    .......223334444556677788****************99999975 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.7   0.0   1.7e-49   3.4e-46       1     237 [.      13     249 ..      13     253 .. 0.91

  Alignments for each domain:
  == domain 1  score: 157.7 bits;  conditional E-value: 1.7e-49
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlq 93 
                 +lVtG++Gf+ s+lv+ l ++g +v++ld+  ++s+ +   +l      +lve+d+ d+  ++     e++da++h+A  +++ + ++ p ++++   +
  KIR64324.1  13 VLVTGGAGFVPSHLVDTLVARGCTVVALDNFVTGSKDNVA-HLhdkpnfTLVEADISDGLPTHHPALAERFDAIMHMASPASPTDFATLPVEILRVGSV 110
                 79*****************************887765543.34578**************888877778****************************** PP

                 HHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSS.BSTCS.TTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHH CS
   Epimerase  94 gtlnlleaarkagvkrllflsSsevYGkdaeqp.keett.ltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipali 190
                  tl+ll+ a + g+ r+l +s+se YG+++e p +e +  +  p+  +s Y  aK+ +e  + ay++  gl+a i+r+fn yGpr   +++ r ip +i
  KIR64324.1 111 ATLHLLDRAVADGA-RFLMASTSEAYGDPKEHPqRETYWgNVNPIGVRSVYDEAKRFSEAATMAYHRYRGLDAAIVRIFNTYGPR-MRPDDGRAIPTFI 207
                 **************.****************9944444413455599*************************************9.9999********* PP

                 HHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEE CS
   Epimerase 191 rkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgei 237
                 +++l+g+ ++t+ g+g++ R  +yveD++++ill+l+  ++g     
  KIR64324.1 208 SQALRGE-PITVHGTGNQTRSICYVEDLVRGILLLLDSTQTG----P 249
                 *******.*****************************95544....3 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   6.8e-11   1.4e-07       2     253 ..      12     292 ..      11     298 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 6.8e-11
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT....................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre....................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayav 77 
                    ++lvtG+ G + s+L++ l ++g+ v+al++                     e+d++d    ++   + + d+++++A         + + +  +v
     KIR64324.1  12 RVLVTGGAGFVPSHLVDTLVARGCTVVALDNFvtgskdnvahlhdkpnftlvEADISDGLPTHHPALAERFDAIMHMASPASPTDFATLPVEILRV 107
                    79***************************887899****************************999999************9999999******** PP

                    HTHHHHHHHHHHHHCT-EEEEEEEGGGS-S-.....TTS-B-TTS----SSHHHHHHHHHHHHHHH....H-SSEEEEEE-SEESS....SSS-HH CS
  RmlD_sub_bind  78 naeavealAeaaaavgalLihvStDyVFdGe.....kkrpYeeddetsPlnvYGrtKlaGEqavla....agkkalivRtswvyge....kgknfv 160
                     + a+ +l + a a ga ++  St   +        +++ + + ++ + ++vY ++K   E a  a     g +a+ivR+   yg      +   +
     KIR64324.1 108 GSVATLHLLDRAVADGARFLMASTSEAYGDPkehpqRETYWGNVNPIGVRSVYDEAKRFSEAATMAyhryRGLDAAIVRIFNTYGPrmrpDDGRAI 203
                    **************************99777344433333555555555679************9966666779**********997766666789 PP

                    HHHHHHHHH-SEEEE..ESS-EE--EEHHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHCHTTSEEEEE-CCCS--SS--- CS
  RmlD_sub_bind 161 ktmlrlakereelkv..vaDqlgsPTsardlAevllqllekaaeekelagvyHlanegetswlefArailkeagadseevkpistaeyptpAkRP 253
                     t+++ a + e+++v     q++s  +++dl + +l ll+         g   ++ e e++  ++A+ i++ +g++s ev+ ++ a+   + +RP
     KIR64324.1 204 PTFISQALRGEPITVhgTGNQTRSICYVEDLVRGILLLLDSTQT-----GPVNCGTEHELTMRQLAELIVSLSGSTS-EVTYVTRAADDPEMRRP 292
                    999999*9999999933468*******************99996.....88888899999999*******9999955.88888888777777887 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.6e-10   3.1e-07       1     226 [.      14     239 ..      14     249 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.6e-10
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD...lrespelleelskvnvkkviegDvtdk.dkleeal.egvdvvihlaslvdvag.kltedeimkvnv 93 
                 +vtGgaGF+ ++lv +Lv ++   +v +lD      ++++     k n + ++e+D+ d  ++ + al e  d+++h+as    +   +   ei +v  
  KIR64324.1  14 LVTGGAGFVPSHLVDTLVARG--CTVVALDnfvTGSKDNVAHLHDKPNFT-LVEADISDGlPTHHPALaERFDAIMHMASPASPTDfATLPVEILRVGS 109
                 69*******************..599999954222333333333333333.9******96355555662668*******98777765778889****** PP

   3Beta_HSD  94 kGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdk..... 187
                   T  +l+ +v  g r+l+  S+ e+ g+  ++++ ++       +    ++y e K+ +E++ ++        g  l    +R    yG++ +     
  KIR64324.1 110 VATLHLLDRAVADGARFLM-ASTSEAYGD-PKEHPQRETYWGNVNPIGVRSVYDEAKRFSEAATMAYHR---YRG--LDAAIVRIFNTYGPRMRpddgr 201
                 **************99875.999*****9.6666667666777777789*************9998777...344..8889999999999975422221 PP

   3Beta_HSD 188 llvpllkqlaklglalfkigdeevlsdrvYvgNvawahi 226
                  + +++ q+++ g+ +   g  +++ +  Yv+ ++  ++
  KIR64324.1 202 AIPTFISQALR-GEPITVHGTGNQTRSICYVEDLVRGIL 239
                 45555666655.558899999999999999999887665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.1e-08   2.2e-05       1     142 [.      17     186 ..      17     193 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.1e-08
                     TTTSHHHHHHHHHHHHC-T-EEEEE....ETTHHHCHHHHCTTTCEEEE--TT-..CCHHHHHHTT-SEEEES---TCC..HHHH.......... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtal....vRnpeklaeleaeeglevvegdvtd..vedlaealkgadaVvsalggggk..deeg.......... 77 
                     G+ G v ++lv+ l+arg  +v+al    + +++ +a+l ++++ ++ve+d++d  +    +  +  da++  +++ +      +          
      KIR64324.1  17 GGAGFVPSHLVDTLVARG-CTVVALdnfvTGSKDNVAHLHDKPNFTLVEADISDglPTHHPALAERFDAIMHMASPASPtdF--Atlpveilrvg 108
                     899**************5.999996333255799********************6556666667788**9999976655442..23466677778 PP

                     ...HHHHHHHHHHCT--EEEEEEETTTTS...GCGCH...HHHHHHHCCHHHHHH.HHHHHHHHHH....SSSEEEEEE CS
  NAD_binding_10  78 ...aknivdaakeagvkRfvlvsaigvgd...evpge...fgewnkellkaylaa.kraaeellra....sgldwTivr 142
                        + +++d a + g  Rf++ s+  ++    e+p++   +g++n   +++++++ kr +e+   a    +gld  ivr
      KIR64324.1 109 svaTLHLLDRAVADGA-RFLMASTSEAYGdpkEHPQRetyWGNVNPIGVRSVYDEaKRFSEAATMAyhryRGLDAAIVR 186
                     8889999999999998.*********99622233333211223333467888865244444443333334999999999 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0     0.009        18       1     119 [.      13     123 ..      13     138 .. 0.62
   2 !   14.2   0.0   9.2e-06     0.018     136     252 ..     158     276 ..     150     287 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.009
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      vlvtG++G + s+lv++++++ ++ + l +    + +++++ +  ++ +    ++   v +d+ d    ++   + + d+++h A         
       KIR64324.1  13 VLVTGGAGFVPSHLVDTLVARGCTVVALDNFVTGSKDNVAHLH--DKPN----FT--LVEADISDGLPTHHPALAERFDAIMHMASPASPTDFA 98 
                      89*****************999887776555555555554433..1111....22..3346666666666555556667777766665555566 PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieag 119
                      + p+e ++   ++t ++++ a++ g
       KIR64324.1  99 TLPVEILRVGSVATLHLLDRAVADG 123
                      6666666666666666666666555 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 9.2e-06
                      SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETTGT.....TSSHHHHHHHHHTTSSEEES-T.T-EEEEE-HHHHHHHHHHHHHH--SS CS
  Polysacc_synt_2 136 nvmGatKrlaekllqalakeseekktkfvvvRfGNVlgSr.....GSviplFkkqikeggpvtvTdp.emtRyfmtieeavqLvlqalalakgg 223
                      +v+  +Kr++e  ++a+++++       ++vR  N  g r     G  ip+F +q  +g+p+tv  + + tR +  +e+ v+ +l  l  +++g
       KIR64324.1 158 SVYDEAKRFSEAATMAYHRYR---GLDAAIVRIFNTYGPRmrpddGRAIPTFISQALRGEPITVHGTgNQTRSICYVEDLVRGILLLLDSTQTG 248
                      678899************999...556666665555554333334*******************754388************************ PP

                      -EEEE--.-EEEHHHHHHHH......... CS
  Polysacc_synt_2 224 eifvldmGepvkivdlakalielsgleek 252
                       +      + +++++la+ +++lsg +++
       KIR64324.1 249 PVNCGTE-HELTMRQLAELIVSLSGSTSE 276
                      **99988.9999***********998765 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00025       0.5      60     208 ..      58     192 ..      15     231 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00025
                    TTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--...SS-S.STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS- CS
  NAD_binding_4  60 erikvveGDlseprlGLseedlqelaeevdviihsa...AtvnfdepykellrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvy 152
                     + + ve+D+s+   GL+ ++   lae+ d+i+h+a     ++f     e+lrv   +t ++l+ a +  +   +l  ST+ ++g+ +++ ++   
     KIR64324.1  58 PNFTLVEADISD---GLP-THHPALAERFDAIMHMAspaSPTDFATLPVEILRVGSVATLHLLDRAVADGA--RFLMASTSEAYGDPKEHPQR--- 144
                    445555555554...343.3445678888888888722134666666667888888888888888874433..59999995555555555433... PP

                    H......HHH--EEEETTTCCCHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEE- CS
  NAD_binding_4 153 eegekeekldederaklkglpntYeqsKalaEklvrearrrsglpvvivRpsiitg 208
                            +      +  g+   Y   K  +E    +++r  gl ++ivR+ + +g
     KIR64324.1 145 --------ETYWGNVNPIGVRSVYDEAKRFSEAATMAYHRYRGLDAAIVRIFNTYG 192
                    ........445566777888899999999999999999998899999999766665 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.8e-05     0.075       3      60 ..      13      69 ..      11      86 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.8e-05
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTS CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtd 60
                vlvtG+++ +   ++++l+++G++vv++d+     +  +++l++ + +++ +++D++d
  KIR64324.1 13 VLVTGGAGFVPSHLVDTLVARGCTVVALDNFVTGSKDNVAHLHD-KPNFTLVEADISD 69
                9******99**********************************8.588*******997 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00025       0.5       1      54 [.      13      69 ..      13     134 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00025
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S..-SHHHHHHHHSTTEEE.ES-TT- CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdt..kselakslkeaGvelv.kgdldd 54
                +lv+G++G   +++v+ l+++g +v al   +  +++++++l ++++ ++ ++d+ d
  KIR64324.1 13 VLVTGGAGFVPSHLVDTLVARGCTVVALDNFVtgSKDNVAHLHDKPNFTLvEADISD 69
                79*************************96655889999********96665999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2424.02
//
Query:       KIR64325.1  [L=409]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-44  150.1   0.0    7.7e-44  149.5   0.0    1.3  1  LytR_cpsA_psr  Cell envelope-related transcriptional attenuat


Domain annotation for each model (and alignments):
>> LytR_cpsA_psr  Cell envelope-related transcriptional attenuator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.5   0.0   4.3e-48   7.7e-44       1     151 [.     159     312 ..     159     313 .. 0.94

  Alignments for each domain:
  == domain 1  score: 149.5 bits;  conditional E-value: 4.3e-48
                    --SEEEEEEEEGGGTEEEEEEE-TTBEE-----...--...---EES-TTTTT-HHHHHHHHHHHHTS---EEEEE-HHHHHHHHHHHT---B--- CS
  LytR_cpsA_psr   1 rsDtimlvtvnakkkkvklvSipRDtlveipggeskat...gekkinsayalggaellvktvekllginidyYvevdfegfaklvdalgGvevdvk 93 
                    r+Dti++++++a++k++ lvSipRD +v ip++ +++    +  kin+a+a+gg  l+vktve +++++id+ +++df+gf+++ dalgGv+ +v+
     KIR64325.1 159 RADTIIVMHIPADHKSAYLVSIPRDLYVPIPENAQADCasgQRAKINAAFAFGGLPLAVKTVECFTDVRIDNVMAIDFAGFKQVTDALGGVDLKVE 254
                    79*****************************873333255689***************************************************** PP

                    -----------------B---HHHHHH-------------SHHHHHHHHHHHHHHTT- CS
  LytR_cpsA_psr  94 edvkdkeeselklkaGeqkldGeqalayvRfRkddeegDlgRikrQqqvleallkklk 151
                    +++++ ++   k+++G+++++G +al ++R+Rk+ ++gD++R+++Qq++l+al++k++
     KIR64325.1 255 RSITSIHKPFRKFTKGTMHMNGAEALDWIRQRKQFPDGDFARMRHQQEFLKALMDKAA 312
                    ***98877779*******************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3103.74
//
Query:       KIR64326.1  [L=408]
Description: LytR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-36  125.4   0.0      3e-36  124.9   0.0    1.2  1  LytR_cpsA_psr  Cell envelope-related transcriptional attenuat


Domain annotation for each model (and alignments):
>> LytR_cpsA_psr  Cell envelope-related transcriptional attenuator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.9   0.0   1.7e-40     3e-36       1     150 [.     129     309 ..     129     311 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.9 bits;  conditional E-value: 1.7e-40
                    --SEEEEEEEEGGGTEEEEEEE-TTBEE-----...--..---EES-TTTTT.........-HHHHHHHHHHHHTS---EEEEE-HHHHHHHHHHH CS
  LytR_cpsA_psr   1 rsDtimlvtvnakkkkvklvSipRDtlveipggeskat..gekkinsayalg.........gaellvktvekllginidyYvevdfegfaklvdal 85 
                    r+Dti++++++a+++++ l+SipRDt  +ip  +++    g++kin+a+++g         ga+l+ +t++k++gi+ d  + ++f gf+ ++dal
     KIR64326.1 129 RADTIIVLHIPASHDQAYLISIPRDTEAQIPAFKKSGYggGTDKINAAFQAGarngggwegGAQLMAQTIKKMTGISFDGAAIINFGGFKGVIDAL 224
                    79*****************************66333335689****************************************************** PP

                    T---B-------------.....................-------B---HHHHHH-------------SHHHHHHHHHHHHHHTT CS
  LytR_cpsA_psr  86 gGvevdvkedvkdkeese.....................lklkaGeqkldGeqalayvRfRkddeegDlgRikrQqqvleallkkl 150
                    g v ++v+++vk++ + +                     +  k+G   ++G  al y+R+R++++++D++R+++Qqq+++a++kk+
     KIR64326.1 225 GTVRICVSHEVKSH-HMSyvdgkpmwnadakktgkpmtpVVHKKGCRDMKGWAALDYARQRYGLPNSDYDRQQNQQQLIKAMAKKA 309
                    ***********987.444688889***************9*******************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 3401.69
//
Query:       KIR64327.1  [L=263]
Description: glycerophosphodiester phosphodiesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-41  140.7   0.0    1.1e-40  140.0   0.0    1.4  1  GDPD      Glycerophosphoryl diester phosphodiesterase family
    4.5e-07   30.1   1.7      6e-07   29.7   0.4    1.9  2  GDPD_2    Glycerophosphoryl diester phosphodiesterase family


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.0   0.0   1.3e-44   1.1e-40       1     258 [.       9     255 ..       9     256 .. 0.86

  Alignments for each domain:
  == domain 1  score: 140.0 bits;  conditional E-value: 1.3e-44
                 TTTTTTTSSTTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH.BGGGS-HHHHHTSTECCTTCCCCSCCCSSGCC....B...BH CS
        GDPD   1 HRGasgnlpEnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagrldvkdltleelkrldkiakenkaqlsenrvrle....fpfptl 95 
                 HRG+s++lpE+Tl+++ +A+++G+d +E+Dv+lT+Dg++V++HD++ldrt ++ g   v+  tl+el  ld  ++++ + ++++  +l     +++ tl
  KIR64327.1   9 HRGSSADLPEHTLAAYLRALDEGVDGLECDVRLTRDGHLVCVHDRRLDRTSNGTG--LVSVRTLAELEALD-FGSWHPGCVPPDGDELPdeshTRLLTL 104
                 *******************************************************..**************.8899987766665544466999***** PP

                 HHHHHH..HHHCCSEEEEEEECCCCCCCHHHHHHTCHHHCCCCCSCHHTT..STTC...SCEEEESTHHHHHHHHHTCTCTEEEEEEHHHHHHC-E.EE CS
        GDPD  96 eevlkk..pqnvglnieikipmlseakeeeelqivkeilksvdeilkkvlkkadkr...kvifssfnpdilkllrekqpklpllflteggteaeadssl 189
                 e +l+    ++  + + i++++ s ++ + e    +++++ +++++   l   d++   +v++ sf+p +++++r ++p lp+++l+e + +++     
  KIR64327.1 105 ERLLDAvlAAGRPVRLLIETKHPSRYGGHVE----RRLVALLRRYG---LAEPDPDalvQVTVMSFSPLAVRRVRDLAPGLPTVLLLE-VLPRWL---- 191
                 *****98888888889999999999999888....67777777777...333333322379999***********************8.444444.... PP

                 CHCCCCCCCTCCCCHHCCCHCCCEB.CHHHHHHHTT-EEEEBSB-THSHHHHHHHHCCC-SEEEES-HH CS
        GDPD 190 eraakfakadallgevsavaeglgdpdlVkraksrglvvhvytvnnedeeemkrlleagvdgvitDfpd 258
                 +     +++    + v++v  +   p+lV +++++g +v+v+tvn++  +e +++l++gvdg+itD+p+
  KIR64327.1 192 RLGRLPFGTRIAGPGVELVRAR---PRLVPALRAAGHQVYVWTVNEP--AELDLVLDVGVDGIITDRPA 255
                 4566677888888888888888...**********************..******************96 PP

>> GDPD_2  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.7   6.3e+03      17      24 ..      28      35 ..      25      35 .. 0.80
   2 !   29.7   0.4   6.7e-11     6e-07       1      30 []     226     255 ..     226     255 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.7
      GDPD_2 17 vgaGVdgI 24
                ++ GVdg+
  KIR64327.1 28 LDEGVDGL 35
                678***97 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 6.7e-11
      GDPD_2   1 kvrfWttddeavwrelvgaGVdgInTDdld 30 
                 +v+ Wt++ +a++   ++ GVdgI+TD+++
  KIR64327.1 226 QVYVWTVNEPAELDLVLDVGVDGIITDRPA 255
                 79**************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1678.00
//
Query:       KIR64328.1  [L=149]
Description: ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.8e-08   32.0   0.0    1.2e-07   31.8   0.0    1.1  1  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.023   14.4   0.1      0.046   13.5   0.1    1.5  1  GPHH         Voltage-dependent L-type calcium channel, IQ-ass
       0.13   12.7   0.0       0.21   12.1   0.0    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0     2e-11   1.2e-07      10     122 ..      23     132 ..      14     135 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 2e-11
  HATPase_c_2  10 tvrevaeavlrraglseelldeirlaveEactNavehayleapegpvevr..lesdeea..ltvevaDsGpgfdpetlpdpteeepkeslkegGrGla 103
                   +r+ +++ l +  +++ ll+++  +++E++ Nav+ha    p g v+v+  l+++++   ++++v+D G++  p  +          ++   GrGl+
   KIR64328.1  23 LARHRLADEL-ADVVPSMLLADLVAVLAELVGNAVRHAEA-LPGGVVRVAwrLRRTPDGqfVQLRVTDGGAAAGPLVRVA-------SPDAVDGRGLH 111
                  4444444443.23456666779*****************7.999***999774444444559**********88876543.......56789****** PP

  HATPase_c_2 104 likglvDevey..dgegnvvt 122
                  +++gl+    +  dg g +v+
   KIR64328.1 112 IVAGLASRWGVdrDGLGQCVW 132
                  ******998775566677776 PP

>> GPHH  Voltage-dependent L-type calcium channel, IQ-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   7.7e-06     0.046       5      16 ..     131     142 ..     129     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.7e-06
        GPHH   5 vWaeyDPeAtgr 16 
                 vWae+DP+At r
  KIR64328.1 131 VWAEFDPAATPR 142
                 8********977 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.4e-05      0.21       6      46 ..      44      90 ..      41     138 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.4e-05
                HHHHHHHHHHHHHHHHS..TTTEEEEEEEE...EE.TEEEEEEEESS CS
   HATPase_c  6 LrqiisnlvdNavkfat..kageieveika...se.ddlvisveDnG 46
                L  ++ +lv+Nav++a   ++g ++v  +    ++ + ++++v+D G
  KIR64328.1 44 LVAVLAELVGNAVRHAEalPGGVVRVAWRLrrtPDgQFVQLRVTDGG 90
                7789***********55447777766555443411578888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1054.04
//
Query:       KIR64329.1  [L=296]
Description: topoisomerase II [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2415.27
//
Query:       KIR64330.1  [L=398]
Description: arginine deiminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-92  308.8   0.0    4.9e-92  308.6   0.0    1.0  1  Amidinotransf  Amidinotransferase


Domain annotation for each model (and alignments):
>> Amidinotransf  Amidinotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.6   0.0   2.7e-96   4.9e-92       1     340 []      17     397 ..      17     397 .. 0.97

  Alignments for each domain:
  == domain 1  score: 308.6 bits;  conditional E-value: 2.7e-96
                    E----HHHHT--TTTTTTTT-SS---HHHHHHHHHHHHHHHHTTT-EEEEHHHHHHHHCTSHHHHHHHHHHHSSTTTTITTT.............. CS
  Amidinotransf   1 mvrPgrflenltetasdnllqddeiilekaqkEHdafvqvLrekGveVlvledllaealeaeearkekldeklleselgikl.............. 82 
                    ++rPg +l +lt+++ d ll+d+++++ +aq+EHdaf++ Lr++GveVl+l  llae+l+ +ear e   + l+  +lg +l              
     KIR64330.1  17 LHRPGPELARLTPRNNDSLLFDAIPWVGRAQEEHDAFAAELRARGVEVLYLATLLAETLAVAEARTELTEQVLSSPRLGDTLrrrvadhlayldpa 112
                    79*******************************************************************9999999999999************** PP

                    ..........GGGS-S-HHHHHHHHHHHHH----EEE---GGGG-TTTTEEEEBSEEEE---SSGGGHHHHHHHHHHHHHSHTSB-EEEEE-T.TS CS
  Amidinotransf  83 ..........gvklseeikiekleladkatsnnsflipplpnlvFtrdwfstigggvvlnpmaapnRrrErllaeliykkhpgvkvakvldis.gk 167
                               ++++   ++   +l+ +  +  +f+i+plpnl+Ftrd++ +ig  v ++++a p+RrrE++ + +iy++hp++     ++ +  +
     KIR64330.1 113 aladvliaglAHEELRISRERPGGLVYSLMDRHDFVIDPLPNLLFTRDSSLWIGDRVGVTSLAMPARRRETSITDAIYRHHPRF-----VGTEfVY 203
                    ********9988888899999999999999****************************************************55.....5555445 PP

                    --TT----GGGEEEEETTEEEEEESSSS-HHHHHHHHHHHHHTTS-SEEEEEE--GGSSTS-GGGTEEEEETTEEEE-HHHH.TT-E......... CS
  Amidinotransf 168 eeesktlEGGdfvvlskgvvaigvssRtdeegieelakklfyktvafkviaieipkgraimHldtvftvvdddavvclpsildaegv......... 254
                    + + + lEGGd+++l +gv+a+gv++Rt+++g+e+la++ f+ + a++++++ i+++ra mHldt +t+vd dav+++ ++ +   +         
     KIR64330.1 204 HPRLEHLEGGDVLLLAPGVLAVGVGERTTPAGAERLARQVFAAGLAHTILVVPIAQERATMHLDTICTMVDVDAVLMYANVASSLVAytvvagpdg 299
                    6669******************************************************************************99866********* PP

                    ......SS-HHHHHHHHTT-SS-EEEE-C......S-SS-B---S-EEEETTEEEEETTGHHHHHHHHHTT-EEEEE-HTTTGGGS--TTTT-EEE CS
  Amidinotransf 255 ......kakereavaqaLkekgleiIeig......eeeqwnfggNvLelkpgvvvaydrntvtnekleeagievievpiselerGgGgarCmsapl 338
                           a++ +a a+a++ ++l++I++g      e+eqw++g+N+L+++p   v+y+rnt tn++le+agievi++++sel+ G+Gg+rCms+pl
     KIR64330.1 300 epqvdgPAPFLRAAADAMDLDQLRVIDTGldpvtaEREQWDDGNNTLAIAPRLCVGYERNTGTNAQLERAGIEVIPIAGSELGSGRGGPRCMSCPL 395
                    ******9***************************************************************************************** PP

                    EE CS
  Amidinotransf 339 fr 340
                    +r
     KIR64330.1 396 VR 397
                    98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.51
# Mc/sec: 2370.06
//
Query:       KIR64331.1  [L=246]
Description: hypothetical protein TK50_01095 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.32s 00:00:00.87 Elapsed: 00:00:00.53
# Mc/sec: 1406.08
//
Query:       KIR64332.1  [L=152]
Description: hypothetical protein TK50_01100 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0025   17.8   0.0     0.0039   17.2   0.0    1.3  1  PAS       PAS fold


Domain annotation for each model (and alignments):
>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.2e-07    0.0039       3      48 ..      30      76 ..      28      77 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.2e-07
                HHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTH.HHCTTSBGGG CS
         PAS  3 lraileslpdpifvvDedgrilyvNaaaeellGlsr.eevlgkslld 48
                ++a +  +++p++++D+d+r++ v+a+ +ell l + ++v+g +lld
  KIR64332.1 30 WSATVTRADEPCLLIDADTRVVAVSASGCELLCLGCpDDVIGLPLLD 76
                566777799*********************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1156.84
//
Query:       KIR64333.1  [L=127]
Description: hypothetical protein TK50_01105 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-14   53.6   0.0      2e-14   53.1   0.0    1.2  1  ACT_7     ACT domain


Domain annotation for each model (and alignments):
>> ACT_7  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   1.1e-18     2e-14       2      65 .]      58     120 ..      57     120 .. 0.95

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 1.1e-18
                 EEEEEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE-SS-EEEEEEGGGHHHHHHHHHH CS
       ACT_7   2 sedgwiklsvvgsglpfdvtGivaklaspLaeagIsifqiStyrtdyiLVpeedlekAveaLhe 65 
                 +e +w++l++vg+ l   vtG +a+l++pL+ea +   ++Sty+td++LVp+  l +A +aL++
  KIR64333.1  58 VETDWRCLRIVGP-LGQAVTGTLAALIGPLTEARVDPVAFSTYDTDHVLVPAVRLGEATAALRR 120
                 799**********.7779********************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 850.36
//
Query:       KIR64334.1  [L=318]
Description: prephenate dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-46  156.6   0.0    7.3e-46  156.3   0.0    1.1  1  PDT       Prephenate dehydratase
    2.9e-07   30.1   0.0    5.2e-07   29.3   0.0    1.4  1  ACT       ACT domain
  ------ inclusion threshold ------
       0.49   10.3   8.1       0.27   11.2   2.0    3.0  3  DUF4880   Domain of unknown function (DUF4880)


Domain annotation for each model (and alignments):
>> PDT  Prephenate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.3   0.0   1.2e-49   7.3e-46       2     181 ..      10     187 ..       9     189 .. 0.98

  Alignments for each domain:
  == domain 1  score: 156.3 bits;  conditional E-value: 1.2e-49
                 EEES-TTSHHHHHHCCCS.....EEEEES-HHHHHHHHCTTS-SEEEEEEEESSS-B-HHHHHHHHH.SSEEEEEEEEEE---EEEE-TT--TTT--EE CS
         PDT   2 aylGpegtyshqAalkvfkaedvelipvasieevfeavekgeadyavvPiENsteGsVnetlDlLlkesdlkivgEvvlpiehcLlakpktkleeikkv 100
                  ylGpegt+ +qA+++v  ae+ +  p++s+ e++e+v+  ead a+vP+ENs+ G+V  tlD L++ ++l i++Ev+lp+e+ L a+p+t+ eei++v
  KIR64334.1  10 VYLGPEGTFAEQALRTVPAAERGTRTPARSVGEALESVRASEADAALVPLENSIGGAVGVTLDELAEGEPLVITREVILPVEFVLGARPGTSPEEIRSV 108
                 69***************99************************************************99****************************** PP

                 EE-HHHHHHTHHHHHH-.TTSEEEE-S-HHHHHHHHHHCT-TTEEEEE-HHHHHHTT-EEEECS-SS-S--EEEEEEEEET CS
         PDT 101 yShpqalgQcrkfLeehlpqvervavestaeAakkveassdkdaaaiasevaaelyglkvleeniedkknntTRFlvlake 181
                  +hpqa  Qcr +L++hlp++ +v+v s+++Aa    a++ +  aai++ + a +++l vl+ +i d+++ +TRF +l++ 
  KIR64334.1 109 AAHPQASTQCRGWLRAHLPDAVVVDVLSNGAAAAG--AATGEYDAAICAPIGAARHRLAVLADKIADHPDAVTRFALLSRP 187
                 ***********************************..8999999**********************************985 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   8.8e-11   5.2e-07       6      65 ..     205     264 ..     199     266 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 8.8e-11
                 EEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTT CS
         ACT   6 gvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkl 65 
                  ++Dr+G+L  v+  la rg+N+++ie+r++++ ++++vf+ + +++   + + eal+ l
  KIR64334.1 205 IAHDRVGALLSVLMELAVRGVNLTRIESRPTGEALGRYVFFLDCTGHVAEPRLGEALQGL 264
                 689**************************************9999999888888888866 PP

>> DUF4880  Domain of unknown function (DUF4880)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.051     3e+02      12      30 ..     107     125 ..     104     126 .. 0.81
   2 ?   -2.3   0.0      0.74   4.4e+03      31      36 ..     278     283 ..     275     283 .. 0.89
   3 ?   11.2   2.0   4.5e-05      0.27       2      16 ..     304     318 .]     303     318 .] 0.90

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.051
     DUF4880  12 sgeasaadraafqaWlaad 30 
                 s +a ++   +++ Wl+a+
  KIR64334.1 107 SVAAHPQASTQCRGWLRAH 125
                 55677888899******98 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.74
     DUF4880  31 PrHarA 36 
                 PrH++A
  KIR64334.1 278 PRHRWA 283
                 9***98 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 4.5e-05
     DUF4880   2 qAaaWlvrLrsgeas 16 
                  AaaWl+rLr+ge+s
  KIR64334.1 304 DAAAWLARLRAGELS 318
                 5***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2056.10
//
Query:       KIR64335.1  [L=240]
Description: hypothetical protein TK50_01120 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-32  113.5   1.6    1.2e-32  113.3   1.6    1.0  1  AIM24     Mitochondrial biogenesis AIM24


Domain annotation for each model (and alignments):
>> AIM24  Mitochondrial biogenesis AIM24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   1.6   6.9e-37   1.2e-32       7     200 ..      24     216 ..      20     217 .. 0.95

  Alignments for each domain:
  == domain 1  score: 113.3 bits;  conditional E-value: 6.9e-37
                 SS-EEEEEE-TT-EEEE-CCGEEEEETTEEEEE....--------------EEEEEEES.SS-EEEEE--SSSE.EEEEEEGGTT.EEEEEGGGEEEEE CS
       AIM24   7 pssllsvtLspgeelyaerGalvamsgkvemet....gllkalkrlltgeslfllkftakissgtvllapklpg.tivtlelgggdwlivqkdafLAat 100
                 +s++l+++L+   e +a+ G++va++g+v++++    gl+k+lk+ ltge++ l+k t++   g+v+la  ++  +i++le  +gd l ++ +++LA++
  KIR64335.1  24 NSKMLKIELN--GEAMARVGSMVAYQGQVQFQAlgsgGLGKFLKQKLTGEGVPLMKLTGR---GDVFLAELAKDvHIIDLE--PGDALSINGSSVLAFD 115
                 569******5..579*******************************************77...*******99999999999..899************* PP

                 TT-EEEEEEEE--SSGGGTS-EEEEEEESSSEEEEEEECSEEEEEEE.EEEEEEEGGGEEEEETTEEEEEEEE.....TT---STTTTS-EEEEEEEEE CS
       AIM24 101 gnveldikfqkglkglfggeglflqkltGrGlvalsgyGaiyeielkageelvvdpghlvafsgslkfdierv.....gglkrrligGeglflkltGpg 194
                 +++++di++ +  +g+ +++glf+  +tG+G +a++ +G+++ +++  + +  vdp++ v++s++l+   +r+     g+l++r  +Ge + + + G+g
  KIR64335.1 116 STLQYDIRMVG-GAGMASSSGLFNCVFTGHGRIAITTKGTPVVLNV--DAPTYVDPQAAVCWSANLQTGYHRAeqfglGTLLGRS-TGEAFTMSFAGQG 210
                 **********6.489999****************************..789**********************8888889****9.9************ PP

                 EEEEES CS
       AIM24 195 tvllqs 200
                  v++q+
  KIR64335.1 211 FVVVQP 216
                 *****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1947.06
//
Query:       KIR64336.1  [L=143]
Description: peroxiredoxin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-20   73.2   0.1    2.4e-20   72.9   0.1    1.1  1  OsmC      OsmC-like protein


Domain annotation for each model (and alignments):
>> OsmC  OsmC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.1   1.3e-24   2.4e-20       2      99 ..      40     137 ..      39     138 .. 0.89

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 1.3e-24
                 TXSSB-HHHHHHHHHHHHHHHHHHHHTCCCT---SCEEEEEEE..EEECCECTCEEEEEEEEEEE-SS-H..HHHHHHHHHHHHHSHHHHHHCT-SSSE CS
        OsmC   2 dgsgpsPeelllaalasCfaitlravakkkgikledlevevea..erdpegakgiteirlkvevkipgadseeklkkllekaekrCpvsntlkngvkve 98 
                 +g+g++Peel+ aa+a+Cf++++++ ++++g   +++e+++++  +++++g + +t+i+l+   ++pg d e++++kl+e a+++Cp+s++l  g +++
  KIR64336.1  40 EGEGTNPEELIGAAHAACFSMAFSKQLADAGATGTSVETTAKVhfDKTDAGMT-VTRIDLETVGQAPGLD-EAQFAKLAETAKENCPISRLLSPGAQIS 136
                 578***************************99999997776662266666666.**************99.7***********************9998 PP

                 E CS
        OsmC  99 l 99 
                 l
  KIR64336.1 137 L 137
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1101.43
//
Query:       KIR64337.1  [L=228]
Description: hypothetical protein TK50_01135 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.017   14.9  12.8      0.023   14.5  12.8    1.2  1  Trp_oprn_chp  Tryptophan-associated transmembrane protein (Tr
        0.3   11.0   0.0       0.43   10.5   0.0    1.1  1  STAG          STAG domain


Domain annotation for each model (and alignments):
>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5  12.8   2.6e-06     0.023       2     144 ..      49     192 ..      48     208 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-06
  Trp_oprn_chp   2 lllalgAallllasrltWvtvtvsdalggprtvalsGadwapaltalAlvllAaavAvlavrglgrrvvgvl...lalagagaavaalslltdpada 95 
                   ++  lg+++++++   +W+ +tv +++ +  t+++ G+          l  l ++ A++ +  l++r  +++   + +ag+++++a + +l++++ +
    KIR64337.1  49 VAAGLGGVAAFASLVGEWLVMTVPTGGPEGDTLRVPGGVSDVGGFG--LGYLVGLFALVTAAALALRGSAAVrhdARVAGLALSTALVGVLVATSVS 143
                   6778999******************************987655555..5555555555555555555555552224566666666666666666666 PP

  Trp_oprn_chp  96 araaaaaatgvasaaaaveltawpvlalaggvllllagvllllrarswp 144
                    + + ++a   ++   +ve+  + v+a+a++vll++a  l+ ++ +  p
    KIR64337.1 144 LDDSGRQALYSSEDGFQVEYGRGLVAAFAACVLLAAALYLAGRTESGSP 192
                   6666656566667777888888888888888877766655555555444 PP

>> STAG  STAG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.8e-05      0.43      59      93 ..     117     151 ..     104     157 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.8e-05
        STAG  59 pfRhtaTlialklqtaLvevakelskeleklqrql 93 
                 + Rh a ++ l+l taLv v++  s +l+++ rq 
  KIR64337.1 117 AVRHDARVAGLALSTALVGVLVATSVSLDDSGRQA 151
                 68*****************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1638.11
//
Query:       KIR64338.1  [L=273]
Description: haloacid dehalogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.3e-42  144.1   0.0    2.3e-41  142.2   0.0    1.7  1  Hydrolase_3  haloacid dehalogenase-like hydrolase
    8.9e-12   45.1   0.1      5e-06   26.2   0.0    2.1  2  S6PP         Sucrose-6F-phosphate phosphohydrolase
    1.2e-07   32.2   1.4    0.00013   22.3   0.0    2.7  2  Hydrolase    haloacid dehalogenase-like hydrolase
    5.4e-05   23.7   0.5      0.041   14.3   0.0    2.6  2  HAD          haloacid dehalogenase-like hydrolase
     0.0067   16.5   0.0      0.012   15.7   0.0    1.5  1  Hydrolase_6  Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.018   15.1   0.0        4.9    7.2   0.0    2.3  2  HAD_2        Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2   0.0   7.7e-45   2.3e-41       1     255 []      10     267 ..      10     267 .. 0.90

  Alignments for each domain:
  == domain 1  score: 142.2 bits;  conditional E-value: 7.7e-45
                  EEEEIIIIIS-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEE....ECTTTEEEEE--B-HHHHHHHHHHHHHT CS
  Hydrolase_3   1 ialDlDGTLlnsdkkisektkeaikklkekgikvviATGRslravlpvleelgldlpvialNGali....ddekgkilykstiskedvkeiikllken 94 
                  ia+DlDGTL++sd+++s +t e++ +++++gi vv ATGR +r ++   +++    +++ + G+++    d +  ++l ++++s+e + ++++ l+ +
   KIR64338.1  10 IATDLDGTLVRSDETVSAYTHEVLDRVRAAGIPVVGATGRGPRLTELTRNDIRAADFLVLAGGGWVvdqsDPAGPELLREERLSREVLARLLADLEAE 107
                  89***************************************************999***999999998877788899*******************99 PP

                  T..CEEEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCTTTE.EEEEESTTEEEEEETT-SHH CS
  Hydrolase_3  95 n..veillytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakililkdkekldelekelksklnkll.titssskgyleimpkgvsKg 189
                     ++++++   ++            ++    + +  e ++ +e  +++++k +  + ++++d l ++ ++ ++ ++ + t+ + g++ei p+gv+K+
   KIR64338.1 108 VgpLTVMVEASGEAGAPLW-----GDYHPSWPYPDLFEPRTRDECLGTDVIKAFARTADHHVDALLETARRIIGPEVaALTQAGLGFVEISPPGVDKA 200
                  9665555444333322222.....3456666777778888888899999************************99998******************** PP

                  HHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEE.EEETTS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 190 talkklakelnisleeviafGDgeNDieMLeaaglg.vAmgnaseevkkaAdyvtksnnedGVakal 255
                  ++l+ +a++l++++++v++fGD+ ND++M+e+ag + vA+ na+++v +aAd vt  n++dGVa +l
   KIR64338.1 201 SGLHVVAQRLGVDPADVLVFGDMPNDLPMFEWAGWSrVAVSNAHPTVRAAADEVTLRNDDDGVAVYL 267
                  **********************************988**************************9876 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.1e-06    0.0033       2      53 ..       7      58 ..       6     107 .. 0.81
   2 !   26.2   0.0   1.7e-09     5e-06     156     215 ..     189     248 ..     179     261 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.1e-06
                SEEEEE-TBTTTB.S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HHHHHHHH CS
        S6PP  2 klllvsdLDntlvdgdnealarlnelleaeerkdvllvfaTGRsldsakell 53
                ++l+++dLD+tlv +d+   a  +e+l+  ++  + +v aTGR +  ++  +
  KIR64338.1  7 PKLIATDLDGTLVRSDETVSAYTHEVLDRVRAAGIPVVGATGRGPRLTELTR 58
                689**********99999999999****99*************998765444 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 1.7e-09
                 EEEEEETT-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHH.TSSSEEEE-TT--HHHHH CS
        S6PP 156 dlDvlPkraskgeAlryLakkleleleqilvcGdsgnDeell.ignvlgVvVgnaqeellq 215
                 ++ + P + +k++ l+  a++l++++  +lv Gd  nD  ++  ++   V V+na++  ++
  KIR64338.1 189 FVEISPPGVDKASGLHVVAQRLGVDPADVLVFGDMPNDLPMFeWAGWSRVAVSNAHPT-VR 248
                 78899*************************************9999**********99.33 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.3   0.00077       2.3       2      26 ..       8      32 ..       7     117 .. 0.76
   2 !   22.3   0.0   4.4e-08   0.00013     150     210 .]     180     234 ..     153     234 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00077
                SEEEEESBTTTBCHHHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  2 ktvvfDkdGTLttgepsvedvivsa 26
                k+++ D+dGTL+++   v   + ++
  KIR64338.1  8 KLIATDLDGTLVRSDETVSAYTHEV 32
                88999*******9998888777777 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 4.4e-08
                 HHHHHTTGGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 150 raanqlGddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 +a+ q+G         ++i+  +  + +g++ ++++L+++p++v+++GD +nD+++++ Ag
  KIR64338.1 180 AALTQAG------LGFVEISPPGVDKASGLHVVAQRLGVDPADVLVFGDMPNDLPMFEWAG 234
                 4555666......33445555555578999***************************9997 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0021       6.2       2      25 ..      11      35 ..      10      71 .. 0.68
   2 !   14.3   0.0   1.4e-05     0.041     142     188 .]     190     231 ..     148     231 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0021
         HAD  2 lfDfDgTLldgdsle.lllrfllrr 25
                  D+DgTL+++d    ++++ +l r
  KIR64338.1 11 ATDLDGTLVRSDETVsAYTHEVLDR 35
                57*********66655655544444 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.4e-05
         HAD 142 lglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpllr 188
                 ++++++     +k++ l     a+  g d+++v ++GD p+Dlp+++
  KIR64338.1 190 VEISPPG---VDKASGLHV--VAQRLGVDPADVLVFGDMPNDLPMFE 231
                 3344444...444544444..55589999****************86 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     4e-06     0.012       2      55 ..      11      65 ..      10     104 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4e-06
                 EEESTTTSEETTEE-.TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHHHHTT CS
  Hydrolase_6  2 lfDidGvLwrgdkai.pgaaealnalraagkpvvllTNnsskseeeyakkleklg 55
                 ++D+dG+L+r d+ +    +e+l+++raag+pvv  T ++ +  e   +++++ +
   KIR64338.1 11 ATDLDGTLVRSDETVsAYTHEVLDRVRAAGIPVVGATGRGPRLTELTRNDIRAAD 65
                 79********8887615689**************999888777666666666555 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0046        14       4      27 ..      13      36 ..      10      64 .. 0.85
   2 ?    7.2   0.0    0.0016       4.9     140     174 ..     202     236 ..     197     240 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0046
       HAD_2  4 DlDgTlldteeliiqafnelleey 27
                DlDgTl+ + e++ + ++e+l++ 
  KIR64338.1 13 DLDGTLVRSDETVSAYTHEVLDRV 36
                9*****************999876 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0016
       HAD_2 140 viekaleklklkkeeviyvGDsptDieaakkagik 174
                  ++ + ++l++++++v+++GD p+D+     ag  
  KIR64338.1 202 GLHVVAQRLGVDPADVLVFGDMPNDLPMFEWAGWS 236
                 5678899******************9776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1918.89
//
Query:       KIR64339.1  [L=270]
Description: haloacid dehalogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-52  178.6   0.0    2.1e-52  178.4   0.0    1.0  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
      1e-13   51.4   0.0    2.2e-07   30.6   0.0    2.1  2  S6PP             Sucrose-6F-phosphate phosphohydrolase
      6e-08   33.2   1.0       0.01   16.2   0.0    3.2  3  Hydrolase        haloacid dehalogenase-like hydrolase
    1.6e-07   31.9   4.8      0.016   15.6   0.1    3.3  3  HAD              haloacid dehalogenase-like hydrolase
    0.00029   20.9   0.0    0.00067   19.7   0.0    1.6  1  Hydrolase_6      Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.036   13.2   0.0      0.087   11.9   0.0    1.6  2  Trehalose_PPase  Trehalose-phosphatase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.4   0.0   6.9e-56   2.1e-52       1     255 []       8     263 ..       8     263 .. 0.96

  Alignments for each domain:
  == domain 1  score: 178.4 bits;  conditional E-value: 6.9e-56
                  EEEEIIIIIS-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEE.ECTTTEEEEE--B-HHHHHHHHHHHHHTT.. CS
  Hydrolase_3   1 ialDlDGTLlnsdkkisektkeaikklkekgikvviATGRslravlpvleelgldlpvialNGali.ddekgkilykstiskedvkeiikllkenn.. 95 
                  +a+D+DGTLl+++ ++s++t++a+++++++g  vv+ TGR++r+++ v+e+l   lp+i++NGa++ d   +++l ++++ +e + e+   l+ +   
   KIR64339.1   8 VATDIDGTLLTDERTLSPRTRDALARMSARGTPVVLVTGRPIRWLQLVYEQLAEPLPAICANGAVVyDPVADEVLRADPLAPELLAEVARRLRAEVpg 105
                  79***************************************************99**************************************99889 PP

                  CEEEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCTTTE.EEEEESTTEEEEEETT-SHHHHH CS
  Hydrolase_3  96 veillytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakililkdkekldelekelksklnkll.titssskgyleimpkgvsKgtal 192
                  v+++++  d+  + ++     +    + +++  + i+s eel++ ++ k+l  + +++ d + + ++  l  l+ ++ ss  g +ei ++gv+K+ +l
   KIR64339.1 106 VSFAVEIVDSREMRHE---AGYPLRWDADAEAIRAITSPEELHSVPAVKLLARAGEQDPDVFVEVVAGALRGLAeATHSSYTGLVEISAAGVTKAAGL 200
                  9999999999988888...88889999999999999*********************************9999977888999**************** PP

                  HHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 193 kklakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVakal 255
                    ++ +l+i+  +v+afGD+ ND++ML++ag+gvA++na++ v ++Ad vt+ n+ dGVa +l
   KIR64339.1 201 AWYCARLGIDERDVLAFGDMPNDVPMLTWAGRGVAVANAHPAVLAIADEVTAANSADGVAAYL 263
                  ************************************************************886 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     3e-07   0.00088       2      74 ..       5      75 ..       4     104 .. 0.86
   2 !   30.6   0.0   7.5e-11   2.2e-07     148     223 ..     178     253 ..     159     264 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3e-07
                SEEEEE-TBTTTB.S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HHHHHHHHHHHT----SEEEETTTTEEEE CS
        S6PP  2 klllvsdLDntlvdgdnealarlnelleaeerkdvllvfaTGRsldsakellkeknllkPdvlitsvGteiyy 74
                ++l+++d+D+tl++ ++    r ++ l  ++++ + +v++TGR +   + ++++  l +P  +i++ G+ +y+
  KIR64339.1  5 PRLVATDIDGTLLTDERTLSPRTRDALARMSARGTPVVLVTGRPIRWLQLVYEQ--LAEPLPAICANGAVVYD 75
                5799*********7777778899*****9****************999888876..66777788999998887 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 7.5e-11
                 EEEEETTTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSSSEEEE-TT--HHHHHHHHHH--T CS
        S6PP 148 kviyssgkdlDvlPkraskgeAlryLakkleleleqilvcGdsgnDeellignvlgVvVgnaqeellqwllenake 223
                  ++ s    + + + +  k++ l++++ +l+++ + +l  Gd  nD  +l+   +gV V+na+++ l+ ++e ++ 
  KIR64339.1 178 ATHSSYTGLVEISAAGVTKAAGLAWYCARLGIDERDVLAFGDMPNDVPMLTWAGRGVAVANAHPAVLAIADEVTAA 253
                 556677778889999999***********************************************88877776554 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.4     0.012        37       2      18 ..       6      22 ..       5      24 .. 0.85
   2 !   12.8   0.0   3.5e-05      0.11     114     188 ..      18     101 ..      16     111 .. 0.75
   3 !   16.2   0.0   3.3e-06      0.01     155     210 .]     184     231 ..     110     231 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.012
                SEEEEESBTTTBCHHHH CS
                xxxxxxxxxxxxxxxxx RF
   Hydrolase  2 ktvvfDkdGTLttgeps 18
                ++v+ D+dGTL+t e+ 
  KIR64339.1  6 RLVATDIDGTLLTDERT 22
                68999*******99965 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.5e-05
                 HHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT....GGGESEEEEHHCES....STTT.SHHHHHHHHHHHTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx....xxxx.xxxxxxxxxxxxxx RF
   Hydrolase 114 adplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG....ddyfdaviasdiet....vakp.spegkvaaireLqg 188
                  d++++ p +++a+a+  a+g +vvl+tg   +  + + +ql     + + ++ + +d ++     a p  pe + +++r+L++
  KIR64339.1  18 TDERTLSPRTRDALARMSARGTPVVLVTGRPIRWLQLVYEQLAeplpAICANGAVVYDPVAdevlRADPlAPELLAEVARRLRA 101
                 57888*********************************9995548653333444444444455665555678888888888864 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 3.3e-06
                 TTGGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 155 lGddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                  G         ++i++ +  +  g+   + +L+++ ++v+++GD +nD+++l  Ag
  KIR64339.1 184 TG--------LVEISAAGVTKAAGLAWYCARLGIDERDVLAFGDMPNDVPMLTWAG 231
                 33........4455556666888999999***********************9887 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.7     0.094   2.8e+02       2      12 ..       9      19 ..       8      24 .. 0.79
   2 !   15.3   0.1   6.5e-06     0.019      85     165 ..      22     102 ..      18     117 .. 0.67
   3 !   15.6   0.1   5.3e-06     0.016     112     187 ..     162     227 ..     149     228 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.094
         HAD  2 lfDfDgTLldg 12
                  D+DgTLl++
  KIR64339.1  9 ATDIDGTLLTD 19
                57******987 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 6.5e-06
         HAD  85 lldpgalellaahraaGdrvvvvSgglrplvepllaelg..adevlatelevdd.rltgelglegkpvrgegkvaalrewlaae 165
                 +l p  +++la+  a+G +vv+v+g + ++++ + ++l     ++ a+   v d + +    l+ +p + e  + + r+ l ae
  KIR64339.1  22 TLSPRTRDALARMSARGTPVVLVTGRPIRWLQLVYEQLAepLPAICANGAVVYDpVADEV--LRADPLAPELLAEVARR-LRAE 102
                 56788888888888*********************9998855555555333333455555..66666666333333333.4444 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 5.3e-06
         HAD 112 rplvepll.aelgadevlatelevdd.rltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpll 187
                 + +ve ++ a+ g    la+     +  +tg     + + +g  k+a l+   + +  gid+ +v a+GD p+D+p+l
  KIR64339.1 162 DVFVEVVAgALRG----LAEA---THsSYTGL---VEISAAGVTKAAGLAW--YCARLGIDERDVLAFGDMPNDVPML 227
                 5666666666666....5551...11367777...5555666666777777..555668999***************8 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.2e-07   0.00067       2      51 ..       9      59 ..       8      67 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.2e-07
                 EEESTTTSEETTE.E-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHH CS
  Hydrolase_6  2 lfDidGvLwrgdk.aipgaaealnalraagkpvvllTNnsskseeeyakkl 51
                 ++DidG+L+ +++ + p   +al ++ a+g pvvl+T +  +  + + ++l
   KIR64339.1  9 ATDIDGTLLTDERtLSPRTRDALARMSARGTPVVLVTGRPIRWLQLVYEQL 59
                 79******98655278*********************88877777666666 PP

>> Trehalose_PPase  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.9e-05     0.087       2      72 ..      10      76 ..       9     106 .. 0.75
   2 ?   -1.9   0.0      0.49   1.5e+03     154     201 ..     186     230 ..     181     257 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.9e-05
                     EETBTTTB---SSGGG--B-TTHHHHHHHHHTTS-..EEEE-SS-HHH.HHHHH---S.SEEEEGGGTEEE-T CS
  Trehalose_PPase  2 lDydGTlspivedpdaavpssellslLkkLasdpknvvaivSGrslke.eellvkvpe.lglaaeHGaeirsp 72
                     +D+dGTl +      + ++s++++++L +++++    v++v+Gr ++  +  + ++ e l+ +  +Ga + +p
       KIR64339.1 10 TDIDGTLLTD-----ERTLSPRTRDALARMSARGT-PVVLVTGRPIRWlQLVYEQLAEpLPAICANGAVVYDP 76
                     699**99875.....55****************66.9*******99884444444433366666666666665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.49
                      EEEEE-S---HHHHHHHHHHTS--------EEEEEE-SSTTHHHHTTS CS
  Trehalose_PPase 154 vvevrpqgvsKGkaverlleslgsadseddfvlciGDdrtDedmFsvl 201
                      +ve+ ++gv+K + +++   +lg +    + vl+ GD   D  m ++ 
       KIR64339.1 186 LVEISAAGVTKAAGLAWYCARLGID---ERDVLAFGDMPNDVPMLTWA 230
                      6899999999999999999999887...56666788888887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1923.20
//
Query:       KIR64340.1  [L=265]
Description: hypothetical protein TK50_01155 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-10   40.4   0.0    5.3e-10   39.1   0.0    1.7  1  Peptidase_S9   Prolyl oligopeptidase family
    1.4e-08   34.3   1.1    5.9e-06   25.7   0.6    2.2  2  Hydrolase_4    Serine aminopeptidase, S33
    1.1e-07   32.6  26.0    2.7e-05   24.9  22.6    2.3  2  Abhydrolase_6  Alpha/beta hydrolase family
    1.4e-06   28.3   6.5    3.2e-05   23.9   6.5    2.0  1  Abhydrolase_3  alpha/beta hydrolase fold
    1.8e-06   27.8   0.0      3e-06   27.1   0.0    1.3  1  Esterase       Putative esterase
    5.5e-06   26.2   0.0    0.00067   19.4   0.1    2.3  2  Abhydrolase_1  alpha/beta hydrolase fold
     0.0082   16.0   0.0       0.12   12.2   0.0    2.0  2  Abhydrolase_2  Phospholipase/Carboxylesterase
     0.0097   15.5   0.0      0.013   15.0   0.0    1.1  1  DUF2974        Protein of unknown function (DUF2974)
  ------ inclusion threshold ------
      0.021   14.7   0.0      0.035   14.0   0.0    1.3  1  Ser_hydrolase  Serine hydrolase
       0.12   11.5   0.0       0.17   11.0   0.0    1.1  1  DUF2920        Protein of unknown function (DUF2920)
       0.19   11.3   0.4       0.76    9.3   0.5    1.9  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   3.3e-13   5.3e-10      68     193 ..     124     248 ..      65     259 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 3.3e-13
                   EEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTS..THH.HCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THH CS
  Peptidase_S9  68 itGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdl..lte.eymewgnpeeneegykelspyspldnvkaypplLlihGlaDdrvppae 161
                   + G+S+GG l++ a++ +p + ++++a +pv+d++  +   dl    +      g p e ++ y   ++++p   v + +++ ++hG +D +vp+  
    KIR64340.1 124 LVGHSAGGHLALYAAATAPGTVAGVLALAPVADLTEAYRL-DLdgG-AvAALLGGGPAEHPQRY---AAADPRLLVPIPTRTVILHGRLDRQVPMGV 215
                   68*********************************99999.57753.43555556676777777...8889988888******************** PP

                   HHHHHHHHH--S-SEEEEEETTS-S.STTSSHH CS
  Peptidase_S9 162 alklvaaLqkkgknvlllifpdegH.gvgkpra 193
                   +  ++aa + +g +v+l+  p+  H g+ +p++
    KIR64340.1 216 SRSYAAAARAAGSPVELVELPECEHfGLIDPES 248
                   *************************65555555 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.6   3.6e-09   5.9e-06       3     117 ..      41     161 ..      39     176 .. 0.79
   2 !    7.3   0.0    0.0015       2.5     192     238 ..     198     246 ..     167     247 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3.6e-09
  Hydrolase_4   3 pkavvvlvHGlaehs....gryaelaeaLaaqGfavyalDhrGhGrse.gkrghvpsfddyvdDlaafvekvkeehpel.plfllGhSmGGliallyl 94 
                  p  +vv+vHG    +    g    la+aLaa G+ v+ l +r  G+ + g  g ++++   v+ l  +   v  +  +  p  l+GhS GG +al ++
   KIR64340.1  41 PLPLVVVVHGGFWRAeydrGHTGPLAAALAALGYPVAQLEYRRTGQPGgGWPGTLADVLAGVAALPGLAGPVLGDRLRPgPPLLVGHSAGGHLALYAA 138
                  567899***986654222255667**********************986777877777777777777777777444444599**************** PP

  Hydrolase_4  95 lrypdkvaglilsaPalkikakl 117
                  ++ p  vag+   aP+ ++ + +
   KIR64340.1 139 ATAPGTVAGVLALAPVADLTEAY 161
                  ***************99988765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0015
  Hydrolase_4 192 lPllllhGeaDkvvdpeasrelyerlgsk..dktlklypglyHellnEp 238
                  + + +lhG  D+ v+++ sr ++++++++   ++l   p++ H  l +p
   KIR64340.1 198 TRTVILHGRLDRQVPMGVSRSYAAAARAAgsPVELVELPECEHFGLIDP 246
                  3499***************555544444433999999999999776665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9  22.6   1.7e-08   2.7e-05       1     125 [.      45     186 ..      45     195 .. 0.60
   2 !    9.8   1.3   0.00068       1.1     153     215 ..     179     247 ..     162     250 .. 0.61

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.7e-08
                    EEEE--GC.....G.....C..HHHHHHHHCCT...CEEEEE--TTS.TS-GGCS--HHHCHHH...HHHHCCTT.........TTSEEEEEETCH CS
  Abhydrolase_6   1 vlllHGagssassW.....l..vapLaallaag...vhvlapDlpGh.Grsdpppldledladl...aalldelaa.......gggpvvlvGHSlG 75 
                    v+++HG++     W     +  ++pLaa+laa    v+ l + + G+ G   + + +   lad+   +a+l +la+       ++gp+ lvGHS G
     KIR64340.1  45 VVVVHGGF-----WraeydRghTGPLAAALAALgypVAQLEYRRTGQpG---GGWPGT--LADVlagVAALPGLAGpvlgdrlRPGPPLLVGHSAG 130
                    89****88.....987754144779955555554444444455556653...444333..555533466666666689999999************ PP

                    HHHHHHHHHCC....EE.EEES-..----TTT......S----TTHHHHHHTT-CCCCH CS
  Abhydrolase_6  76 Galalaaapla..lvvg.vlldppptalpagl......laaalelllallallrllawl 125
                    G+lal aa+ a   v+g ++l+p   ++++++         a++ ll+ ++++++ ++ 
     KIR64340.1 131 GHLALYAAATApgTVAGvLALAP---VADLTEayrldlDGGAVAALLGGGPAEHPQRYA 186
                    ******99999998899788888...444333333333333333333333333333333 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00068
                    HHCCHHC.HTTCCHHTT-TTGCEEE.CTT-CHHH.....HCHHCCCH.STTEEETCE...SSS-HHHHSHH CS
  Abhydrolase_6 153 allaglg.llpaaawadlpvpllvl.ggeDplvp.....rllerlla.qagarlpvvlpgaGHlphleepd 215
                    a  ++++ +  ++ + ++p+++++l g  D+ vp      +++++ a    ++l v+lp + H+ ++ +p+
     KIR64340.1 179 AEHPQRYaAADPRLLVPIPTRTVILhGRLDRQVPmgvsrSYAAAARAaGSPVEL-VELPECEHFGLI-DPE 247
                    444444422235566666666667768****77744443333333333366666.************.996 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   6.5     2e-08   3.2e-05       1     207 [.      45     240 ..      45     243 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2e-08
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---T..TTS-TTHHHHHHHHHHHHHHHTH...HHHTETTCEEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlA..PehpfPaavedalaalrwlaeqa...welgadpsrivlaGdSaGGnlaaavalr 91 
                    +v +HGG + ++  + h+  ++   ++lg+ v   +Yr+   P   +P  + d+la +  l   a      ++ p    l+G SaGG+la+++a  
     KIR64340.1  45 VVVVHGGFWRAEYDRGHTGPLAAALAALGYPVAQLEYRRTgqPGGGWPGTLADVLAGVAALPGLAgpvLGDRLRPGPPLLVGHSAGGHLALYAAAT 140
                    6899*************8888888888************8779999******9988777776666322466699********************88 PP

                    HHHTT---EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGCS-.SST--.-EEEEEETT-TTHHHH.. CS
  Abhydrolase_3  92 ardegepkvagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlylpeadrddplaspllaed.lsglp.ptlvvvaefDplrdeg.. 183
                    a  +    vag++ + Pv dl  t  e++++         l       ++ + l++  +++p     + ++ l  +p +t+++ +  D     g  
     KIR64340.1 141 APGT----VAGVLALAPVADL--T--EAYRLD--------LDG----GAVAALLGGGPAEHPQRYAAADPRlLVPIPtRTVILHGRLDRQVPMGvs 216
                    8875....9*********988..4..444322........111....1223455555555553332222222333332577777777765554422 PP

                    HHHHHHHHHTT--EEEEEETTEET CS
  Abhydrolase_3 184 eayaerlraagvevelieyegmvH 207
                    + ya++ raag +vel+e ++  H
     KIR64340.1 217 RSYAAAARAAGSPVELVELPECEH 240
                    678888888888888888888777 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.9e-09     3e-06     118     173 ..     123     193 ..     113     205 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.9e-09
                 EEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CC............HCHHHC...TTCCHHHCC-CCCC CS
    Esterase 118 avaGqSmGGlgALilalkhpdrFgsvssfSpivnps............namWgq...eekeawqendpvll 173
                  ++G+S GG+ AL++a+++p+  + v++++p+++++            +a+ g    e+ +++++ dp ll
  KIR64340.1 123 LLVGHSAGGHLALYAAATAPGTVAGVLALAPVADLTeayrldldggavAALLGGgpaEHPQRYAAADPRLL 193
                 69*********************************977777777666655555566666666777777665 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   4.1e-07   0.00067      68     115 ..     115     159 ..     112     170 .. 0.85
   2 ?    4.5   0.0     0.014        23     213     255 ..     199     245 ..     169     247 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.1e-07
                    HHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHH CS
  Abhydrolase_1  68 dalgddkltlvGhSmGGmialayaaeyperVkalvllgaidpaaslie 115
                    d+l  +++ lvGhS GG +al++aa +p  V+++ +l++    a+l e
     KIR64340.1 115 DRLRPGPPLLVGHSAGGHLALYAAATAPGTVAGVLALAP---VADLTE 159
                    678888999*****************************9...444444 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.014
                    EEEEEEETTCSSSCHHHHHHHHHCHTS....EEEEEEETCSSSHHHH CS
  Abhydrolase_1 213 ptlvisgtsDplvppkaledlaqllpk....krlvvisdagHlafle 255
                     t++++g+ D+ vp ++++ +a++ +     ++lv ++ ++H+ +++
     KIR64340.1 199 RTVILHGRLDRQVPMGVSRSYAAAARAagspVELVELPECEHFGLID 245
                    69**********************66666899***********9876 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   7.2e-05      0.12     109     138 ..     124     153 ..     119     162 .. 0.90
   2 ?    1.4   0.0      0.14   2.3e+02     159     199 ..     200     240 ..     182     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.2e-05
                    EEEETHHHHHHHHHHHT-SS--SEEEEES- CS
  Abhydrolase_2 109 igGFSqGaalalylaltlpkklggivafsg 138
                    ++G S G+ laly+a t p  ++g++a+  
     KIR64340.1 124 LVGHSAGGHLALYAAATAPGTVAGVLALAP 153
                    89************************9965 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.14
                    EEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT--S CS
  Abhydrolase_2 159 ilqiHgeeDpvvplalgkaakevlkkllkkvelksyeglaH 199
                     + +Hg  D  vp+ ++   + + +++   vel+ +++  H
     KIR64340.1 200 TVILHGRLDRQVPMGVSRSYAAAARAAGSPVELVELPECEH 240
                    5668*************999999999999999999888777 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.2e-06     0.013      85     109 ..     121     145 ..     116     167 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.2e-06
     DUF2974  85 kiylgGhSkGGnlAvyaamnaeddl 109
                 + +l+GhS GG lA+yaa++a+ ++
  KIR64340.1 121 PPLLVGHSAGGHLALYAAATAPGTV 145
                 5689***************987665 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.2e-05     0.035      54     167 ..     119     256 ..     116     260 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.2e-05
                    STTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--SGG...................S..TT.GGGCGCTTS-SSHHCCHCEEEEETTBTTC-H CS
  Ser_hydrolase  54 eekvvlvAHSlgclavlhaaelqlakkvagalLVapadve...................eeaaklaelaefaplpreklpfpslvvaSenDpyvsf 130
                    +++ +lv HS g +++l aa ++++  vag+l  ap +                       a+++++ a+++p    + p +++++  + D  v++
     KIR64340.1 119 PGPPLLVGHSAGGHLALYAA-ATAPGTVAGVLALAPVADLteayrldldggavaallggGPAEHPQRYAAADPRLLVPIPTRTVILHGRLDRQVPM 213
                    56789************999.9*************9764358999999999999998877777777788777777777777778888889988888 PP

                    HHHHHHHHHC...T-..EEEEETT-TTSS.GGGT-SS-HHHHH CS
  Ser_hydrolase 131 eeaeelaeaw...ga..elvdlgeaGHin.adsgfgswpegla 167
                      ++++a+a    g+  elv+l+e  H+  +d   ++wpe+ +
     KIR64340.1 214 GVSRSYAAAAraaGSpvELVELPECEHFGlIDPESSAWPEVAR 256
                    8777765543111432367888888888624667777887765 PP

>> DUF2920  Protein of unknown function (DUF2920)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0001      0.17     181     215 ..     121     155 ..     116     166 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
     DUF2920 181 pviliGgsyGGYlalLiaKiaPwyvdgvlDnssva 215
                 p +l+G s GG lal +a  aP++v gvl  + va
  KIR64340.1 121 PPLLVGHSAGGHLALYAAATAPGTVAGVLALAPVA 155
                 5679************************9765555 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.5   0.00047      0.76     106     149 ..     125     170 ..      29     184 .. 0.82
   2 ?   -0.8   0.0      0.57   9.3e+02     226     256 ..     195     225 ..     179     236 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00047
                    EEECHHHHHHHHHCTT--TTEEEEEEECE-S-TCCCCSE...CTTEE CS
  Peptidase_S15 106 tGiSYlGttqllaaatgvpalkaivpeaaisdlyddyyr...egGlv 149
                    +G S +G ++l+aaat++  ++ + ++a+++dl +  yr   +gG+v
     KIR64340.1 125 VGHSAGGHLALYAAATAPGTVAGVLALAPVADLTE-AYRldlDGGAV 170
                    79******************************999.55422245555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.57
                    T--S-EEEEEECCSSTTCCHHHHHHHHHCCT CS
  Peptidase_S15 226 kvkapvllvgGwnDwnvkngaiklyealkap 256
                     + + +++++G  D +v  g+++ y a+ ++
     KIR64340.1 195 PIPTRTVILHGRLDRQVPMGVSRSYAAAARA 225
                    67789999******99999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 1972.11
//
Query:       KIR64341.1  [L=401]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-51  176.6   9.4    1.3e-51  176.3   9.4    1.1  1  Peripla_BP_6  Periplasmic binding protein
    4.4e-09   35.8   0.0    6.9e-08   31.9   0.0    1.9  2  Peripla_BP_5  Periplasmic binding protein domain
    1.6e-07   30.8   0.0      7e-07   28.7   0.0    1.7  1  ANF_receptor  Receptor family ligand binding region
  ------ inclusion threshold ------
      0.096   12.6   1.7       0.22   11.5   1.7    1.7  1  TAT_signal    TAT (twin-arginine translocation) pathway signa


Domain annotation for each model (and alignments):
>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.3   9.4   2.9e-55   1.3e-51       1     342 []      40     387 ..      40     387 .. 0.92

  Alignments for each domain:
  == domain 1  score: 176.3 bits;  conditional E-value: 2.9e-55
                   EEEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEE CS
  Peripla_BP_6   1 pikiGlltplsGpyassgksllagaqaafeeiNaaGGinGrkielverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvi 97 
                   p+kiGl++p +G ++++g + ++g+q+++    +    +G+++++v++D + +++++ +a+  l+  +gv al+g+++sav+ +++++++k++vp++
    KIR64341.1  40 PVKIGLIAPQTGGFKAIGDEIVNGFQLYLTLNGQ--QLGGHPVTVVTADEGETAKTGKAAVDSLLK-QGVLALTGVVNSAVMVGIRDTVEKARVPLV 133
                   79****************************9644..467***************************.****************************** PP

                   ESS-HH.CCTTSTTEEESS--HHHHHHHHHHHHHHHTT.SCEEEEEEESSHHHHHHHHHHHHHHHCCTEE.......EEEEEEE-.TTHHHHHHHHH CS
  Peripla_BP_6  98 gpaglt.gekcspyvfslgpsysaqasalveylakelg.gkkvalvyadyafgregiaalkaaakaaGge.......vvgeepvp.lgttdfsaqvl 184
                   g  ++  + +   y++++++  +  ++a++ y+a+ l  g++va++++d+  +r++i++l+a +  aG         v+++ + + +g+t ++a ++
    KIR64341.1 134 GSNASPkSLQSVVYIWRTSYVLDEPGRAIGPYMAQRLPtGSRVAIIAPDNLGSRDVIQGLQAQFSTAGTGdpriadpVIWTDTSStPGGTAYTADIR 230
                   *7665525699999*********************9888****************************9877887777666655552566******** PP

                   HHHTTT-SEEEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHHHHHHHHHHHHTTEEEEESCSTCCCSHHHHHHHHHHHHHHTTGGC--HHHHH CS
  Peripla_BP_6 185 qikaagadavllagtgadlaallkaaaeaGldakrillvswsgseedlkalggeaaegvlavtpyfpdldnpavrafvaayeaayggapppsqfaag 281
                    + a ++da+++ ++g+++++++k++ + G++++ i   ++    + l  + +  a +++++ +y +dl+n a+r f+ ay++++g+   p+++a++
    KIR64341.1 231 TALARQPDAIFCHFAGPAAVQFIKQLYREGWTGP-IYAPGFLTEGTVLDEVQEVEARNIVTALNYSADLNNTANRTFASAYRKTHGAS--PTTYAMA 324
                   ********************************85.54446668888899**9988********************************8..******* PP

                   HHHHHHHHHHHHHCCT.HCCHHHHHHHHHHS-.BECCCTCCBEECTTSBEE--EEEEEE-.TSS CS
  Peripla_BP_6 282 gyiaadlllealkaag.sltreavraaleslg.fdgllgplkftaedhqasrpvyvvqvd.ggk 342
                    y+aa++l +a++ ag ++t+++v  al ++g +d++ g ++f  + +++++++y+ +v+ +g+
    KIR64341.1 325 SYDAAQVLDKAIRLAGgDPTPQQVNLALGKIGqIDSPRGAWQFN-QPRTPQQKWYLRKVQrDGQ 387
                   ***************847**********************9876.7799*********998875 PP

>> Peripla_BP_5  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.017        78       1      91 [.      41     128 ..      41     134 .. 0.84
   2 !   31.9   0.0   1.5e-11   6.9e-08     182     343 ..     229     388 ..     162     396 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.017
  Peripla_BP_5   1 ikvGvLhSlsGtmaisekslkdaallaieeinaagGvlgrkieavvvdpasdwelfaekaeklieedkvevvfGcwtSasRkavlpvveel 91 
                   +k+G++  ++G   ++  +++++ +l +    ++ G  g+ +  v++d   ++++ ++  ++l++ ++v ++ G   Sa    + + ve+ 
    KIR64341.1  41 VKIGLIAPQTGGFKAIGDEIVNGFQLYLTLNGQQLG--GHPVTVVTADEGETAKTGKAAVDSLLK-QGVLALTGVVNSAVMVGIRDTVEKA 128
                   699***********************9987666665..9****9999988888777777777776.7999999999999888888887775 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 1.5e-11
  Peripla_BP_5 182 vakikkakpdvvlstinGdsnvafykelkeagikaekipvvslsvaeeelaaidaealvGhlaawnYfqsvdtpenkafvakfkarvgedrvtndpm 278
                   ++   + +pd+++   +G ++v+f k+l ++g +   i+   + +  + l ++++  +   ++a nY + +++ +n++f +++++++g++ +t   +
    KIR64341.1 229 IRTALARQPDAIFCHFAGPAAVQFIKQLYREGWTG-PIYAPGFLTEGTVLDEVQEVEARNIVTALNYSADLNNTANRTFASAYRKTHGASPTT--YA 322
                   44445669************************985.3555567788889999999999999***************************97655..56 PP

  Peripla_BP_5 279 eaayiqvklwaqAvekagst.dvekvreallgq.elkapeGevkidpenhhlsktvrigkikadGqf 343
                    a+y + +++ +A++ ag + ++++v+ al +  ++++p+G+ ++++  +  ++  ++ k++ dGq+
    KIR64341.1 323 MASYDAAQVLDKAIRLAGGDpTPQQVNLALGKIgQIDSPRGAWQFNQ-PRTPQQKWYLRKVQRDGQV 388
                   799**************7763778999888664489******99998.6667777788999999985 PP

>> ANF_receptor  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   1.6e-10     7e-07      16     308 ..      71     355 ..      63     369 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1.6e-10
                   -TTSSTTEEEEEEEEE-TT-HHHHHHHHHHHCCCCEEEEEE-SSHHHHHHHHHHHCCTT-EEEESS---GGGG-TTTTTTEEESS--CHHHHHHHHH CS
  ANF_receptor  16 dpnllpgiklgyeiidtccdfslaleaaldflkgkvvaviGpssssvsdavaslanlfkiPvisygstspelsdknryptflrtvpsdtsqaqAivd 112
                   ++  l+g+ +++   d+  + +++++a+ ++lk+ v a+ G ++s+v+  +    +++ +P+++   ++++ +++++  ++ rt++     ++Ai  
    KIR64341.1  71 NGQQLGGHPVTVVTADEGETAKTGKAAVDSLLKQGVLALTGVVNSAVMVGIRDTVEKARVPLVG---SNASPKSLQSVVYIWRTSYVLDEPGRAIGP 164
                   566799999************************88****************************4...3445889999******************97 PP

                   HHH.HT.T--EEEEEEESSHHHHHHHHHHHHHHHHTT...-EEEEEEEEST.......CHHHCHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHHHH CS
  ANF_receptor 113 ilk.hf.gWkkvaliysdddygesglqaleeeleerg...icvalkekipe.......ssnddevvrkllkeikskarvivlfcssedarellkaar 197
                    +  ++    +va+i+ d+   + ++q l+ ++++ g    ++a   +i+         + ++ ++r  l   ++++++i++++ ++ a +++k+ +
    KIR64341.1 165 YMAqRLpTGSRVAIIAPDNLGSRDVIQGLQAQFSTAGtgdPRIA-DPVIWTdtsstpgGTAYTADIRTAL---ARQPDAIFCHFAGPAAVQFIKQLY 257
                   66535514567777777776668899999997777764124666.4444447888776666666666666...99********************** PP

                   HTTS-STTEEEEETCHCCCECTTS-CC..HHHHHTT-EEEEE..--B-HHHHHHHHHST--CCCSSSTCCGSTTCCHHHHH...HHHHHHHHHHHHH CS
  ANF_receptor 198 rlgltgeeyvwiasdawtsslvldkpeltgleaaegvlgfrl..kdpnspkfsefldkreklsdekqnyenegkeqisyqaalmYdaVyllaeAlnk 292
                   r+g tg+   +    +++++  ++++    +  a ++++     +d n++  ++f           + y+++ + ++++ a++ Yda  +l +A++ 
    KIR64341.1 258 REGWTGP--IYA--PGFLTEGTVLDEV--QEVEARNIVTALNysADLNNTANRTFA----------SAYRKTHGASPTTYAMASYDAAQVLDKAIRL 338
                   ******7..444..4555655555553..556677777777646667777777777..........556666666666666677******9999998 PP

                   HHCHH.SSSHCCB-HHH CS
  ANF_receptor 293 llrkk.kpgralscntl 308
                   ++ +  ++  +l+++++
    KIR64341.1 339 AGGDPtPQQVNLALGKI 355
                   87554555555555555 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.7   4.8e-05      0.22       1      25 [.       3      27 ..       3      28 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.8e-05
  TAT_signal  1 klSRRdFLKgsAAaaAAaalggcaa 25
                +++RR  L+  AA++  +++++ca+
  KIR64341.1  3 QMNRRRALQLLAALGTTGLTAACAT 27
                69*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2875.96
//
Query:       KIR64342.1  [L=261]
Description: amidinotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-13   49.0   0.0    8.6e-13   48.1   0.0    1.6  1  Amidinotransf  Amidinotransferase


Domain annotation for each model (and alignments):
>> Amidinotransf  Amidinotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   4.8e-17   8.6e-13     111     338 ..      54     259 ..       1     260 [. 0.87

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 4.8e-17
                    --GGGG-TTTTEEEEBSEEEE---SSGGGHHHHHHHHHHHHHSHTSB-EEEEE-TTS--TT----G.GGEEEE...ETTEEEEEESSSS-HHHHHH CS
  Amidinotransf 111 plpnlvFtrdwfstigggvvlnpmaapnRrrErllaeliykkhpgvkvakvldisgkeeesktlEG.Gdfvvl...skgvvaigvssRtdeegiee 202
                     lp++vF  +  +  +g+v   ++++++R  E  +++++y++         ++   +  +++t EG Gdf  l   + g v+ g + Rt   +  e
     KIR64342.1  54 GLPDMVFAANGAFVVDGTVYGARFKHEQRAAEAAAHRAFYEE---------RGWH-FIAPNETNEGeGDFAYLpeaHGGLVLAGHGFRTELPAHAE 139
                    58****************************************.........3333.3458**********99854466889999999********* PP

                    HHHHHHHTTS-SEEEEEE--GGSSTS-GGGTEEEEETTEEEE-HHHH.TT-ESS-HHHHHHHHTT-SS-EEEE-CS-SS-B---S-EEEETTEEEE CS
  Amidinotransf 203 lakklfyktvafkviaieipkgraimHldtvftvvdddavvclpsildaegvkakereavaqaLkekgleiIeigeeeqwnfggNvLelkpgvvva 298
                     +++l++ +v+ +        +  ++Hld+ ++ +dd  +v++p   +a+      +++v + L     + I   + +  +fg N ++ + +vv+ 
     KIR64342.1 140 AQEALGRPVVSLHL------VDPRFYHLDVALASIDDGNIVYYPGAFSAA------SQRVLAQLF---PDAIVADDVDALAFGLNLVSDGANVVLN 220
                    ********555555......8899**********************9998......444444444...45577888899*******9988666644 PP

                    ETTGHHHHHHHHHTT-EEEEE-HTTTGGGS--TTTT-EEE CS
  Amidinotransf 299 ydrntvtnekleeagievievpiselerGgGgarCmsapl 338
                     +       kl++ag++ ++v+++e  +GgG+++C++a+l
     KIR64342.1 221 -SEASRLAGKLKAAGYTPVPVELTEVRKGGGSVKCCIAEL 259
                    .445566789****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2006.46
//
Query:       KIR64343.1  [L=151]
Description: AsnC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-15   54.7   4.8    7.5e-15   54.5   3.2    1.9  2  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    2.6e-14   52.9   0.1      4e-14   52.3   0.1    1.3  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    9.1e-12   44.4   0.1    1.6e-11   43.5   0.1    1.4  1  HTH_24          Winged helix-turn-helix DNA-binding
     0.0023   17.8   0.4     0.0023   17.8   0.4    2.4  2  MarR_2          MarR family
  ------ inclusion threshold ------
       0.02   15.0   0.5      0.046   13.8   0.0    1.8  2  HTH_20          Helix-turn-helix domain
       0.03   14.2   0.0       0.28   11.1   0.0    2.3  2  MarR            MarR family
      0.035   13.9   0.2       0.22   11.4   0.3    2.1  2  HTH_23          Homeodomain-like domain
      0.041   14.2   0.0        3.1    8.2   0.0    2.2  2  Rrf2            Transcriptional regulator
      0.042   13.8   0.2       0.28   11.2   0.0    2.1  2  HTH_Crp_2       Crp-like helix-turn-helix domain
       0.08   12.5   0.3       0.16   11.6   0.1    1.6  2  HTH_47          winged helix-turn-helix


Domain annotation for each model (and alignments):
>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   3.2   4.2e-18   7.5e-15       1      42 []       3      44 ..       3      44 .. 0.98
   2 ?   -2.8   0.0       3.2   5.8e+03      16      27 ..      75      86 ..      74      86 .. 0.79

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 4.2e-18
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   +D++D++I+++L +daR+sya+++ rv lS+++v rRv+rL+
     KIR64343.1  3 IDAVDQRIIALLVADARASYADIGSRVSLSAPAVKRRVDRLR 44
                   6****************************************7 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.2
  HTH_AsnC-type 16 aRisyaeLAerv 27
                   +R++ a+++ +v
     KIR64343.1 75 GRTTPAQIGVAV 86
                   899999998665 PP

>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.1   2.2e-17     4e-14      15      75 .]      81     140 ..      69     140 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 2.2e-17
                     HHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEEE CS
  AsnC_trans_reg  15 efeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivlet 75 
                     ++  a++++peVv +y+v+G++d l++ +++d+ +le+ l++ l++   v++t+++ivl++
      KIR64343.1  81 QIGVAVRRHPEVVGAYTVSGEADALVHLRAADISHLEEALER-LRAESFVTSTRSTIVLSR 140
                     566799**********************************99.****************85 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.1     9e-15   1.6e-11       2      48 .]       4      50 ..       3      50 .. 0.97

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 9e-15
      HTH_24  2 detdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                d  d +I+ lL +++r s++++  r+ lS ++v+rr++rL  +G+I+
  KIR64343.1  4 DAVDQRIIALLVADARASYADIGSRVSLSAPAVKRRVDRLRAAGVIR 50
                789*******************************************7 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.4   1.3e-06    0.0023      11      52 ..      11      50 ..       3      60 .. 0.84
   2 ?   -0.3   0.2      0.58     1e+03       7      18 ..     101     112 ..      97     144 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.3e-06
                HHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2 11 LaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52
                +a L +  +   + +++  r  ls +av r+++rL aaG ++
  KIR64343.1 11 IALLVADAR--ASYADIGSRVSLSAPAVKRRVDRLRAAGVIR 50
                445555554..7999************************997 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.58
                 HHHHHHHHHCTT CS
      MarR_2   7 qarvLaaLgrrp 18 
                 +a++L +L++++
  KIR64343.1 101 EADALVHLRAAD 112
                 566666666665 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.6e-05     0.046      12      55 ..       7      50 ..       3      53 .. 0.93
   2 ?   -1.9   0.1         2   3.6e+03      43      48 ..     118     123 ..     101     134 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.6e-05
                HHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
      HTH_20 12 RrrilraLaraegltaselaerldlskntlsyHLrvLeeagLve 55
                  ri ++L  ++ ++ +++  r++ls   + ++++ L+ ag ++
  KIR64343.1  7 DQRIIALLVADARASYADIGSRVSLSAPAVKRRVDRLRAAGVIR 50
                57999************************************998 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
                 HHHHHH CS
      HTH_20  43 yHLrvL 48 
                   L+ L
  KIR64343.1 118 EALERL 123
                 334444 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00016      0.28      19      48 ..      21      50 ..       8      52 .. 0.88
   2 ?    0.1   0.0      0.45     8e+02      31      53 ..     113     135 ..     110     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
                EHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR 19 svseLakklgvskstvtrvldrLekkGlie 48
                s +++++++++s ++v r +drL  +G i+
  KIR64343.1 21 SYADIGSRVSLSAPAVKRRVDRLRAAGVIR 50
                5579*******************9999886 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHHTTSEEEEEET CS
        MarR  31 kstvtrvldrLekkGlieRsksp 53 
                 +s++ ++l rL  + ++++++s+
  KIR64343.1 113 ISHLEEALERLRAESFVTSTRST 135
                 67777889999999999999985 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   0.00012      0.22       8      46 ..      10      48 ..       5      51 .. 0.82
   2 ?   -1.1   0.0         1   1.9e+03      10      22 ..      55      67 ..      54      78 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
      HTH_23  8 lrillllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                + i+ll+a+ ++s+++I  +   s   v r + r r+ G+
  KIR64343.1 10 I-IALLVADaRASYADIGSRVSLSAPAVKRRVDRLRAAGV 48
                3.44555557************************998885 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1
      HTH_23 10 illllaeGlsvre 22
                ++  +a+G+++++
  KIR64343.1 55 VVDPAAVGWTTEA 67
                6778889**9986 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0017       3.1      23      56 ..      17      50 ..       9      53 .. 0.85
   2 ?    4.0   0.0     0.037        66      40      59 ..     114     133 ..     101     145 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0017
                CC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        Rrf2 23 eepvsseeiaerqnispsylekilakLrkaglvk 56
                +  +s ++i +r+++s++ +++ + +Lr ag+++
  KIR64343.1 17 DARASYADIGSRVSLSAPAVKRRVDRLRAAGVIR 50
                4458999*************************97 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.037
                 HHHHHHHHHHHHTTSEEEET CS
        Rrf2  40 sylekilakLrkaglvksvr 59 
                 s+le  l++Lr + +v+s+r
  KIR64343.1 114 SHLEEALERLRAESFVTSTR 133
                 799***************98 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015      0.28      21      52 ..      19      50 ..       6      60 .. 0.82
   2 ?    0.3   0.1      0.39     7e+02      37      59 ..     115     138 ..     107     143 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglis 52
                + + ++++s++ l+   v r   +L+ +g+i+
  KIR64343.1 19 RASYADIGSRVSLSAPAVKRRVDRLRAAGVIR 50
                67999**************************8 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.39
                 HHHHHHHHHHHTTSEE.ETEEEEE CS
   HTH_Crp_2  37 tvsrilseLkreglis.rgrriri 59 
                 ++  +l +L+ e  ++ ++ +i++
  KIR64343.1 115 HLEEALERLRAESFVTsTRSTIVL 138
                 677789999999999965532554 PP

>> HTH_47  winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   8.7e-05      0.16      36      77 ..       9      50 ..       2      51 .. 0.88
   2 ?   -2.8   0.0       2.6   4.7e+03      59      74 ..     112     127 ..     108     130 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.7e-05
                HHHHHHH-EEEEEHHHHHHHHT--HHHHHHHHHHHHHTT-EE CS
      HTH_47 36 llwvLnlaDGkrsLldiAeriglpfdrvaaiaraLaeaglla 77
                 +  L  aD + s  di +r+ l++ +v+  +++L++ag+++
  KIR64343.1  9 RIIALLVADARASYADIGSRVSLSAPAVKRRVDRLRAAGVIR 50
                4566779*********************************97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.6
                 -HHHHHHHHHHHHHTT CS
      HTH_47  59 pfdrvaaiaraLaeag 74 
                 ++ ++++++++L++++
  KIR64343.1 112 DISHLEEALERLRAES 127
                 6677888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1087.52
//
Query:       KIR64344.1  [L=634]
Description: hypothetical protein TK50_01175 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     9e-117  391.0   0.0   1.1e-116  390.8   0.0    1.0  1  Beta_propel  Beta propeller domain


Domain annotation for each model (and alignments):
>> Beta_propel  Beta propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  390.8   0.0    6e-121  1.1e-116       1     510 [.     102     618 ..     102     621 .. 0.95

  Alignments for each domain:
  == domain 1  score: 390.8 bits;  conditional E-value: 6e-121
  Beta_propel   1 ySeTNvqvegVdEaDivktDGkyiyvvsgskvvivdaeaeelklvseiklee.....kfkieelyldgdrLvvisseeeeeeseaeeeeepilskeet 93 
                  +S+TNv++ g dE+D+vktDG++i++v+g+ +++vd  +++ +  ++++l+       +   +l+l+gdr +v+  +++   ++  +++ p+   + +
   KIR64344.1 102 HSGTNVHEPGADEPDLVKTDGRRIVTVTGGVLRVVD--PATRRTSGRLDLTGddarpGPGEGSLLLHGDRALVLLRGSTPVLPNGTSARRPAGGPTGA 197
                  69**********************************..8888999999888888977888899*******************999999999988888* PP

  Beta_propel  94 kvliyDisdkenpkllreleldGsyvssRkigdklylvss..............keaeeeeenekeaeeakleellPkv.....seeeeklvacediy 172
                  ++l++D++ +  p l++++++dGs++++R++g ++++v++              +ea++ ++n++++ +a+l+++lP +     +++++  v c+++ 
   KIR64344.1 198 RLLLVDLAGR--PALVGTYRIDGSLLDARLTGPTARVVVRsqarlvfpepgdgaTEAQRLAANRAAIGRADLDAWLPAYdwtegDRRGGGRVGCDRLA 293
                  *********9..****************************************998888889999******************9978888888****** PP

  Beta_propel 173 lpdesesssylvvtsldlak..dkavdskavlgsgeevYvseenlYlas.........eeyeeeeeksedkTeiykfal.sdgkveyaasgeVpGtll 258
                    ++++++ +l+v+s+dla+      d  +v+g++++vY ++ +lYla           + +     ++  T+iy+f++ + g+ +y a+g+VpGtll
   KIR64344.1 294 ATADTTGTALLTVLSFDLAAgrLGDGDPVSVAGDADTVYGTAGSLYLAGqrqrpgqlrPRGWGGPAGRDPGTAIYQFDTrAPGRPRYLAAGTVPGTLL 391
                  ********************9999*********************************9556677889999*********99***************** PP

  Beta_propel 259 nqFsldeydgyLRvatt.leteeseaetsnnvyvL...deklkevGkleglapgEriysvRFmgdraYlVTfrqtDPLFviDLsdpanPkilGeLkIp 352
                  +q++l+e++g+LRvatt  +++ s+++t++ vyvL    + l +vG+++gl++gEri svR++g ++ +VTfr+tDPL+++DL+dpa+P+++GeLkI+
   KIR64344.1 392 DQYALSEWQGHLRVATTsGDDRGSRPTTESGVYVLtrrGDLLTRVGAVTGLGRGERIHSVRYLGPTGHVVTFRRTDPLYTLDLTDPAAPRVTGELKIT 489
                  *****************8788899***********986456********************************************************* PP

  Beta_propel 353 GySeYLhpydenhLlGiGkeadeegeeeqglklslFDVsDpanpkevakvvigdrgsdsealydhkAllfdkeknllaipvseesnsessssqgayvy 450
                  GyS+YLhp + ++LlG+G+ead +g+  qgl++slFDV Dp +p+++a+++++  g  s+++ d++A+l+d+ ++l+a+pv+           g++++
   KIR64344.1 490 GYSAYLHPAGPGRLLGVGQEADADGRA-QGLQVSLFDVADPDRPTRLARHHLPGAG--SAVEFDPHAFLYDPGTGLVALPVH---------DGGLLLL 575
                  **************************9.************************9999..************************.........69***** PP

  Beta_propel 451 kvdaekgfklkgkitheelakeetlkkakdlyeysskvrRslyigdklytvseskiksad 510
                  +v    ++ + g++th+                 +  v+Rsl +g++l+tvs++++++ d
   KIR64344.1 576 RVA-GATIVPAGTVTHPG----------------RAPVSRSLLVGGVLWTVSDAGLRADD 618
                  ***.99**********66................4569****************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4358.32
//
Query:       KIR64345.1  [L=384]
Description: hypothetical protein TK50_01180 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3095.31
//
Query:       KIR64346.1  [L=199]
Description: bifunctional protein IspD/ispF [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-26   92.3  10.6    4.9e-26   92.0  10.6    1.1  1  NTP_transf_3  MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0  10.6   2.7e-30   4.9e-26       1     150 [.       6     153 ..       6     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 2.7e-30
                   EEEEEESS-TTTTT.THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHCHHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHHHH..SSSCEEEEETT CS
  NTP_transf_3   1 aviLAGGrSsRmgg.dKallplggkpllervldalraagvdevvvvggdeevlaalarlgvrvvededpgkgplaslaaalraaa.dadavlvlacD 95 
                   av+LAGG+++Rmgg dK+ +p+gg p+ +rvlda+++a  d  +vvg++ +v      +gvr +++++pg gp+a+ aa+++ ++ +++ v++la+D
    KIR64346.1   6 AVVLAGGAARRMGGvDKPGVPVGGLPMRDRVLDAVADA--DVRIVVGPAGPVP-----PGVRSTRERPPGGGPVAAAAAGVSLLPvGTTTVALLAAD 95 
                   79***********************************9..4567777777775.....8***********************9888*********** PP

                   -TT--HHHHHHHHHCHHHHTSSEEEEESSSEEEECCEEEGGGH...HHHHHHCTHTTH CS
  NTP_transf_3  96 mPlltpelverllaaaaasgadvvvptyegerghpllfrarll...salaallgdqga 150
                   +Pllt+++v+ l++++a+   d v++++ ++r + l+ ++r++   +a+ +l++++g+
    KIR64346.1  96 LPLLTRDAVRLLRDHLADPTVDGVCLVDGDGRRQQLCGVWRVAplrAAFGRLASARGG 153
                   *****************999****************7766654111555566666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1662.41
//
Query:       KIR64347.1  [L=63]
Description: hypothetical protein TK50_01215 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 494.88
//
Query:       KIR64348.1  [L=190]
Description: flavoprotein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-25   88.8   0.0    3.9e-25   88.4   0.0    1.0  1  Flavoprotein  Flavoprotein


Domain annotation for each model (and alignments):
>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   2.2e-29   3.9e-25       4     156 ..       7     175 ..       5     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 2.2e-29
                   EEEE-SSCGGGCHHHHHHHHHH.TTEEEEEEESCHHHHCCHHGGS..........TCSSHHHHHHCTTESEEEEEEEEHHHHHHHHTT--SSHHHHH CS
  Flavoprotein   4 llgiTGsvaaikalellekLkk.egievqvvltkaAkkfiskeklklaa......redpilhielrrwadllviaPasantlakianGiadnlltli 93 
                    ++i+Gs+aa+ +  +l+ L++  +  ++v lt++A++f++++  ++ a       + +++  e++r+  ++v++Pa+a t+a+ a+G+a +++ + 
    KIR64348.1   7 SVIICGSSAAMATSGYLSWLRQeIDLPLRVLLTASAERFVQPQVAAWYAdevyasGDPTLNPTEFARRSLGIVVLPATAGTIAAAALGLAGTPAQTA 103
                   589*******************55999**************993333336677743444556899*****************************999 PP

                   HHTHCCTTEEEEE.--HHCCTCSTCHHHHHHH.HT.........................GHHHHHHHHHHCH CS
  Flavoprotein  94 lratakkpiliaPamnpamyenpqtlknlekl.eegvtvikPse........gdigkgk.maeieeivgkild 156
                   l+a ++ p++++P+mn +m++++ t +++e l +eg+tv++P+e         +  +g  m+ ++++++ +++
    KIR64348.1 104 LLA-SERPAIFFPSMNRSMWTKKTTRRHVEALrDEGHTVVEPQErvifelwrRENALGIaMPPPDAVAELVVS 175
                   955.669*************************66*********989888876555555458888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1417.77
//
Query:       KIR64349.1  [L=226]
Description: hypothetical protein TK50_01225 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.4   1.8       0.53    9.9   0.1    2.1  2  AIRC      AIR carboxylase


Domain annotation for each model (and alignments):
>> AIRC  AIR carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2     0.023   4.1e+02      52      75 ..      47      71 ..      24      76 .. 0.64
   2 ?    9.9   0.1   2.9e-05      0.53      77     115 ..     125     162 ..     112     168 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.023
                TTTEEEEEEEEESS--HHHH.HHHH CS
        AIRC 52 erglkviIagAGgaahLpgv.vasl 75
                   + v+++gAG+    p+  +a++
  KIR64349.1 47 VVAVAVVVVGAGQFGGAPPTtTAAY 71
                4458899999999655554404554 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 2.9e-05
                 SS-EEEEEE--STTCCHHHHHHHHT--TTS--EE-SSTH CS
        AIRC  77 tlPVigvPvkskalkgldsllSivqmPsgvpvatvaigk 115
                   PV g  v+  + +   sl S  ++P+g pv+ v++++
  KIR64349.1 125 AAPVPGRAVSL-QGRIAVSLQSLSRLPEGTPVTRVDVDG 162
                 55665555555.4567899*****************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1697.81
//
Query:       KIR64350.1  [L=168]
Description: hypothetical protein TK50_01230 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-13   48.3   0.1    1.1e-12   47.4   0.1    1.4  1  Sigma70_r4_2    Sigma-70, region 4
    2.5e-10   39.7   0.1    4.2e-10   39.0   0.1    1.4  1  Sigma70_r4      Sigma-70, region 4
    8.2e-08   31.9   3.1    1.4e-07   31.2   3.1    1.4  1  Sigma70_r2      Sigma-70 region 2
     0.0018   17.8   0.0      0.003   17.0   0.0    1.4  1  GerE            Bacterial regulatory proteins, luxR family
     0.0018   18.2   0.0     0.0038   17.1   0.0    1.5  1  Sigma70_ECF     ECF sigma factor
     0.0027   17.4   0.1      0.016   15.0   0.0    2.2  2  HTH_23          Homeodomain-like domain
  ------ inclusion threshold ------
       0.49   10.2   4.7        2.3    8.0   0.2    2.9  3  CysG_dimeriser  Sirohaem synthase dimerisation region


Domain annotation for each model (and alignments):
>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.1   4.4e-16   1.1e-12       4      54 .]     106     156 ..     104     156 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 4.4e-16
                   HHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   4 lrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   ++++la+Lp+  r++++lry+egls  E+A  + +seg+Vks+ +R++++L
    KIR64350.1 106 VLALLATLPTGMRAAVVLRYVEGLSVTEAADAMRCSEGNVKSQSARGLERL 156
                   789*********************************************997 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.1   1.6e-13   4.2e-10       1      50 []     109     158 ..     109     158 .. 0.98

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 1.6e-13
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 +La+Lp   r  ++lr++egl+  E ++ +  S++ V++  +r+l++LR+
  KIR64350.1 109 LLATLPTGMRAAVVLRYVEGLSVTEAADAMRCSEGNVKSQSARGLERLRA 158
                 69***********************************************5 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   3.1   5.5e-11   1.4e-07       4      67 ..      17      78 ..      14      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 5.5e-11
                HHHHHHHHHHHHC.T-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHT CS
  Sigma70_r2  4 rylplvkrlarrl.lgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRk 67
                + +  ++r+a  l  g+ a aeD+vQ a+ rl+ a++r +p+++    a++ r++ naa d+ R+
  KIR64350.1 17 ARRAALVRVATLLvSGDLARAEDVVQTALTRLYLAWPRVRPDTA---YAYARRCVVNAATDERRS 78
                5567788888888788999******************9997777...**************8886 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.2e-06     0.003      11      47 ..     123     158 ..     118     168 .] 0.84

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.2e-06
                 HHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT- CS
        GerE  11 LrllaeGksnkeIAeelniSekTVkvhksnimkKLnv 47 
                 Lr  +eG+s++e A+++ +Se +Vk++ ++ +++L++
  KIR64350.1 123 LR-YVEGLSVTEAADAMRCSEGNVKSQSARGLERLRA 158
                 44.479***********************99999987 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.5e-06    0.0038     133     170 ..     110     147 ..     102     162 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.5e-06
  Sigma70_ECF 133 llsldpeqarlvelrkleGlsveEiAeklgvskrtver 170
                  l+ l+   +  v lr++eGlsv+E+A+++ +s+  v+ 
   KIR64350.1 110 LATLPTGMRAAVVLRYVEGLSVTEAADAMRCSEGNVKS 147
                  55588899999*********************999875 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.2e-06     0.016       6      31 ..     117     142 ..     115     143 .. 0.95
   2 ?   -1.0   0.0      0.65   1.7e+03       2      13 ..     150     161 ..     149     163 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.2e-06
      HTH_23   6 eRlrillllaeGlsvreIAreLgvsr 31 
                 +R+ ++l + eGlsv+e+A+++ +s+
  KIR64350.1 117 MRAAVVLRYVEGLSVTEAADAMRCSE 142
                 69**********************96 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.65
      HTH_23   2 asereRlrilll 13 
                 a+ +eRlr+ll 
  KIR64350.1 150 ARGLERLRALLP 161
                 566899999985 PP

>> CysG_dimeriser  Sirohaem synthase dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2   0.00089       2.3      37      58 .]      24      45 ..      14      45 .. 0.89
   2 ?    3.5   0.1     0.023        60      12      24 ..      82      94 ..      72      95 .. 0.90
   3 ?   -2.9   0.0       2.3   5.9e+03       4      16 ..     109     121 ..     107     125 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00089
                    HHHHHHHTT-HHHHHHHHHHHH CS
  CysG_dimeriser 37 pvaelvlaGdeeeAealleqaL 58
                    +va l+ +Gd ++Ae  +++aL
      KIR64350.1 24 RVATLLVSGDLARAEDVVQTAL 45
                    799****************998 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.023
                    HHHHHHHH-SSHH CS
  CysG_dimeriser 12 lRdrVkarlpdva 24
                    +R+rV a+lpdv 
      KIR64350.1 82 RRERVHAQLPDVV 94
                    7*********985 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.3
                     HHHHHHHHHHHHH CS
  CysG_dimeriser   4 rLAelagrlRdrV 16 
                      LA+l   +R++V
      KIR64350.1 109 LLATLPTGMRAAV 121
                     6888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1263.47
//
Query:       KIR64351.1  [L=293]
Description: formate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-79  266.0   0.0    3.6e-79  265.8   0.0    1.0  1  FdhD-NarQ  FdhD/NarQ family


Domain annotation for each model (and alignments):
>> FdhD-NarQ  FdhD/NarQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.8   0.0     2e-83   3.6e-79       2     236 ..      33     282 ..      32     283 .. 0.93

  Alignments for each domain:
  == domain 1  score: 265.8 bits;  conditional E-value: 2e-83
                 --EEEEEEETT......EEEEEEEE-SSSHHHHHHHHHHHCTS--SGGGEEEEEEETTTEE........EE-S..........---------------. CS
   FdhD-NarQ   2 eEepltivvng......relatlmatpadleelalGfllsegliesaediesievdedeas........vavatra.kaedkeerrtakrvvtsgCglc 85 
                 +Eepl+i+v+       r+la++m+tp+d+ +la+Gfll+egli+  +d++  +++    +        v++a+++ ++ ++  +r++  ++ts+Cg+c
  KIR64351.1  33 VEEPLEIRVGPagpgrrRPLAVTMRTPGDDLDLAIGFLLTEGLIRGDADVRTAQLCAGPDTpntynvvdVVLAPGVpEPAAD-PTRNF--YTTSSCGVC 128
                 799*****9877788889**************************************665446667777799**999666666.78999..********* PP

                 ---...--H------..-----EEGGGHHHHHHHHHTS-SHHHHHS--EEEEEEE.TTEEEEEEEESSHHHHHHHHHHHHHT.TSS.-SSSEEEESS-B CS
   FdhD-NarQ  86 gkesleelletlelp..esdlklsaeallrlmdalrekqelfketggvHaaalfdadgellavreDvGRHnAlDkviGaallegld.lsdkilvvsgRl 181
                 gk+s+++++++++ +  +++l++ a+ l++l+++lr++q+ f++tgg+Haa+lf+ +gel+++reDvGRHnA+Dkv+G+a+++g   l+ ++l+vsgR+
  KIR64351.1 129 GKASIDAVRTRSPYAvaDDPLTVPAALLAELPERLRAAQRHFDRTGGLHAAGLFTGNGELVVLREDVGRHNAVDKVVGWAVRQGRLpLAGHLLLVSGRA 227
                 *****99977777777899****************************************************************9988************ PP

                 -HHHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-EEEEEEETTEEEEEE-GGGE CS
   FdhD-NarQ 182 ssemvqKaaragipvlvsvsaptslavelAeeagltlvgfvrgkrfnvYtgaeRi 236
                 s+e+ qKa++ag+p+l++vsap++la +lAeeag+tlvgf+rg+ +nvYtg +Ri
  KIR64351.1 228 SFELTQKAWMAGVPLLAAVSAPSTLAGDLAEEAGMTLVGFLRGRTMNVYTGGHRI 282
                 ******************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 2020.67
//
Query:       KIR64352.1  [L=187]
Description: NUDIX hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-08   33.2   0.4    6.4e-08   32.7   0.4    1.2  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.4   3.6e-12   6.4e-08       2     128 ..      46     176 ..      45     179 .. 0.66

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 3.6e-12
                 EEEEEEEE.EEETTSEEEEEEESSSSTTTEESSEEECBTTS.HHHHHHHHHHHHHHSE...EE.EEEEEEEEEEEEEEEEEEEEE..EEEEEEEEEEEE CS
       NUDIX   2 lrravgvv.llnekgevLlvrrskkpfpgWelPgGkvepgE.tpeeAArREleEEtGl...ea.ellellgrlhylapydgpygd..eheilyvfleev 92 
                 l+++++++ +  + ++vLl ++   + ++W  +gG+ +pgE +p + ++RE +EEt l    + ++  + +++   +p++++ ++   ++ ++ f+  +
  KIR64352.1  46 LHVTASALvVHPPTRRVLLRWHV--RMRSWLQIGGHGDPGErDPLDVVLREGAEETSLddlVCwPDGAIRQVVV--LPVPASATEpaHEHADLRFV-LA 139
                 67888888566666669999988..8888****************************72113334445554433..33333333353333334444.44 PP

                 CSGCSST.STTTEEEEEEEEHHHHHHHHTHCTHHHHH CS
       NUDIX  93 egelepn.denevsevrwvpleellkeklaaesrkll 128
                 +g++e    e   +++rw++l e+ + +++++ r+l+
  KIR64352.1 140 TGQPERArPEQPAAALRWLSLPEARALTAEPNLRELF 176
                 5554444234457788********7777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1290.54
//
Query:       KIR64353.1  [L=499]
Description: peptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-23   81.2  11.2    5.6e-23   81.2  11.2    2.9  3  CBM_2     Cellulose binding domain
  ------ inclusion threshold ------
      0.038   13.8   4.6      0.038   13.8   0.9    2.5  2  Trypsin   Trypsin


Domain annotation for each model (and alignments):
>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.51   4.6e+03      66      88 ..     209     230 ..     200     241 .. 0.74
   2 ?   -0.6   0.0      0.18   1.7e+03      33      76 ..     321     369 ..     303     398 .. 0.53
   3 !   81.2  11.2   6.2e-27   5.6e-23       1     101 []     401     498 ..     401     498 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.51
                 TT-EE-TTEEEEEEEEEEE-SS- CS
       CBM_2  66 wNgtiapGgsasfGfqgsktgsn 88 
                 wN +  +G ++ fG++   +g+n
  KIR64353.1 209 WNDS-GAGCTVGFGVREVAAGTN 230
                 5554.468888888888777765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.18
                 EEEEE--TTEEEEEE...ESEEEEEETTEE.EEEE-STT-EE.-TTEEE CS
       CBM_2  33 tvewtlpagqrvtql...WnatvsqsGnsv.tatnvswNgti.apGgsa 76 
                 +v++++++ + ++++      + ++sG+s   + +v+ Ngt+ a+G ++
  KIR64353.1 321 EVQFHYDDREDLVEAtqlDGDESARSGDSGgPVYAVNANGTVlAAGTTT 369
                 5666665554443320102223334444321345566677651445554 PP

  == domain 3  score: 81.2 bits;  conditional E-value: 6.2e-27
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTE CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGa 99 
                 +++++av ++W+tG++a+vtv N+g  + +gW+v wt+  +q v+  Wn+ + q+G +vt++n ++N+tia+Ggs+sfGf++ ++ +n  p+ ft+nGa
  KIR64353.1 401 CRVSFAVVNSWGTGYEAAVTVYNDGPQV-TGWNVGWTFGGSQVVQGHWNGVFQQTGATVTVSNENHNATIASGGSVSFGFTADGAPTN--PAPFTLNGA 496
                 899*********************9876.79********9999***************************************999987..8899***** PP

                 E- CS
       CBM_2 100 aC 101
                 +C
  KIR64353.1 497 TC 498
                 *9 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.9   4.3e-06     0.038     119     191 ..     285     363 ..     213     386 .. 0.74
   2 ?   -2.4   0.2      0.38   3.4e+03     120     139 ..     424     443 ..     396     470 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.3e-06
                 TTEEEEEESSBSSTSS.....BSSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTT....E CS
     Trypsin 119 gttclvsGwgrtkekg.....ksdtlqevevpvvsretcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdg....e 191
                 + +  v+Gw+  +  +       ++ +e+ vpv + e   + y+   +e+ + a   +g+++a  GDSGGP+ + +      
  KIR64353.1 285 EVKARVVGWTEVFPGQilcqsGATSAWEIGVPVCNLEVQFH-YD--DREDLVEATQLDGDESARSGDSGGPVYAVNAngtvL 363
                 45577888888777666665666778888888888865544.44..46999999999999***********98777633433 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.38
                 TEEEEEESSBSSTSSBSSBE CS
     Trypsin 120 ttclvsGwgrtkekgksdtl 139
                 ++ +v+Gw   +++g s+++
  KIR64353.1 424 DGPQVTGWNVGWTFGGSQVV 443
                 44556666666666644444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3561.70
//
Query:       KIR64354.1  [L=172]
Description: hypothetical protein TK50_01255 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-12   46.1   0.0    4.4e-12   45.8   0.0    1.1  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    4.8e-12   45.8   0.0    5.9e-12   45.5   0.0    1.1  1  MafB19-deam      MafB19-like deaminase


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   4.9e-16   4.4e-12       7     100 ..       6     101 ..       1     102 [. 0.93

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 4.9e-16
                      HHHHHHHHHHHHHTTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHH.T.SSCETTEEEEEEE--BHHHHHHHHHHT-SEEE CS
  dCMP_cyt_deam_1   7 llelalkaakeaqkcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaakn.g.gsklegatlyvtlePCsmCakaiiqsgikkvv 98 
                      l+  al+aa+e  +  + ++Gav++  +e i+++y +e ++g + +HA ++A+++a +  g + +     l+v+lePC mC  a   +++++++
       KIR64354.1   6 LVGAALEAAEEGLAVGEQPIGAVVLLGDEFIGRAYTQERTSGRRLVHADLLAMMQADEAlGwRRRPYPVRLAVSLEPCVMCLGAAMAMRVDECY 99 
                      6678999999999*************99*****************************99888888889**********************9998 PP

                      EE CS
  dCMP_cyt_deam_1  99 vg 100
                      ++
       KIR64354.1 100 FA 101
                      85 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   6.5e-16   5.9e-12       7     101 ..       7     102 ..       1     108 [. 0.87

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 6.5e-16
  MafB19-deam   7 frkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklksk.rlddatlyvtlepCdmCagaivqaglkklvyga 101
                     al+ +e+++ ++e++igav+  ++++i+r+++++ +    + Ha   a++qA ++l+   r+  + l v lepC mC+ga +  ++ +  +++
   KIR64354.1   7 VGAALEAAEEGLAVGEQPIGAVVLLGDEFIGRAYTQERTSGRRLVHADLLAMMQADEALGWRrRPYPVRLAVSLEPCVMCLGAAMAMRVDECYFAL 102
                  56788999***********************************************9998855156778899***********99888877766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       200  (0.0111551); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1224.44
//
Query:       KIR64355.1  [L=346]
Description: hypothetical protein TK50_01260 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-84  284.6  29.9    1.9e-84  284.4  29.9    1.0  1  DUF4192   Domain of unknown function (DUF4192)
  ------ inclusion threshold ------
       0.13   13.2   0.4       0.13   13.2   0.4    3.2  3  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> DUF4192  Domain of unknown function (DUF4192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.4  29.9   2.2e-88   1.9e-84       1     318 [.      14     322 ..      14     323 .. 0.97

  Alignments for each domain:
  == domain 1  score: 284.4 bits;  conditional E-value: 2.2e-88
     DUF4192   1 PgeLlaalPallGFhPedSvVlvaldggrgrlgpvlRvDlpraeagleavardlaellaregadavvavvvddrgqdrvrplvdalrealaaagvpvaa 99 
                 P++L+aa+P+llGFhP+dSvV+val+g+  r+ +++R+Dlp + ++  + a +la ++ar+ga+++++++++d     v+p+vda+r+ l+aag+ v++
  KIR64355.1  14 PADLIAAVPYLLGFHPADSVVVVALQGR--RIVFAARADLPGPGDDPLDPAVHLAGVIARQGAESATVLGYGDAS--GVTPAVDAVRDSLTAAGLAVLD 108
                 9**************************9..****************99***********************8884..6********************* PP

     DUF4192 100 alvvseiaaggrwwsylc....ccpeeGtvpdpaasplaaaavlaGrvvegsReelearlapvegaaaraaqrraaeraaaaleralarprdaerrsdp 194
                 +l+v+    ggr+wsylc    ccp++Gt++d+ +s ++aaav+aG+v++++R++l+a++ap++g+ ar a+r a++ra+++l+++++++ +a+   + 
  KIR64355.1 109 VLRVT----GGRYWSYLCddpaCCPPDGTPYDTGTSEVSAAAVFAGQVALPDRAALTAQVAPFGGP-ARVAMRHAVDRAERKLDALITAAGEADL-LGG 201
                 *****....******************************************************997.59*****************998777766.578 PP

     DUF4192 195 aevrraaleavraalarvaagaglsdaeeaarlavaLtdvrvRDaalalalgeeaaaaerLwlalarrlpgplrAaalaLlAvvawarGdgalAgvaLe 293
                 +++rra+++avr al+  ++g++l+d+ e+a+l ++Lt+ +vRD a+++ +g++ +  ++Lw++++rr++ +l Aa+ +LlA+++w++G+galA vaLe
  KIR64355.1 202 RALRRAGIDAVRGALRGSRRGERLTDD-EVAWLTLLLTHLPVRDHAWERTDGRDRD--IALWTDVLRRAERDLIAAPGSLLAFACWRAGQGALAAVALE 297
                 ***************************.**************************99..***************************************** PP

     DUF4192 294 aAleadPghslakLLlqalnaGlpP 318
                 + lea+P +sl  LL+++l++G+pP
  KIR64355.1 298 RVLEAHPNYSLGLLLDDLLRRGVPP 322
                 ************************9 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.93   8.4e+03      18      33 ..     180     195 ..     176     208 .. 0.62
   2 ?   -0.8   0.4      0.44     4e+03      10      40 ..     203     234 ..     195     238 .. 0.53
   3 ?   13.2   0.4   1.4e-05      0.13       6      36 ..     278     308 ..     277     312 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.93
      TPR_14  18 deAiallrralalaPd 33 
                 d+A++ l++++ +a +
  KIR64355.1 180 DRAERKLDALITAAGE 195
                 6677777766655443 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.44
      TPR_14  10 allalG..dpdeAiallrralalaPddaeawll 40 
                 al+++G    ++A++  rr  ++  dd++awl 
  KIR64355.1 203 ALRRAGidAVRGALRGSRRG-ERLTDDEVAWLT 234
                 55555432334444444455.345566777754 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 1.4e-05
      TPR_14   6 alaeallalGdpdeAiallrralalaPddae 36 
                 +la a++++G+ + A+ +l+r+l+++P+   
  KIR64355.1 278 LLAFACWRAGQGALAAVALERVLEAHPNYSL 308
                 5899***********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.58
# Mc/sec: 1786.99
//
Query:       KIR64356.1  [L=305]
Description: aminoglycoside phosphotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-45  154.9   0.0    3.3e-45  154.5   0.0    1.0  1  Fructosamin_kin  Fructosamine kinase
    4.9e-11   43.0  11.8      8e-11   42.3  11.8    1.3  1  APH              Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.15   10.9   0.0        0.2   10.5   0.0    1.1  1  DUF1679          Protein of unknown function (DUF1679)


Domain annotation for each model (and alignments):
>> Fructosamin_kin  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.5   0.0   5.5e-49   3.3e-45      21     280 ..      23     289 ..      11     296 .. 0.88

  Alignments for each domain:
  == domain 1  score: 154.5 bits;  conditional E-value: 5.5e-49
  Fructosamin_kin  21 eaekveggeineaylls.eeeqrfFvklne......kealemFeaEaesLealaetqtirvPkvlavGelkdasfLvleyLelklekkesaael 107
                      ++++v+gg++  a +l+ ++ +++F k+           + +F+aEa++L+ l+e+ ++ vP+v+++ +    + L+l+++e +  + e+a+++
       KIR64356.1  23 RETPVAGGDVCAASRLTlDDGHSVFAKTWPaeragrPVPEGFFAAEAAGLRWLREAGAVAVPDVVVALP----ELLALDWVEPGEPTPEAAERF 112
                      5689*********99998999******987332221223569**********************97654....68*********9999****** PP

  Fructosamin_kin 108 gqqLaklHraseqkefGfdvdntigktpqpNewqs.sWaeFfaeqRlgvqlelakekglefakieelvervaell..skhqpkpsllHGdLWsg 198
                      g++La lHr  +++ fG + + ++g+ pq N+  +  W ++fa++Rl+  l+++ + g  +a  ++lve+v e++   + +  p+ +HGdLW g
       KIR64356.1 113 GRELAALHR-AGAPAFGAEWAGFVGALPQDNTPDDgPWPAWFARRRLLPYLRMSVDSGALTAAETALVEQVVERVgeFGGDEPPARVHGDLWPG 205
                      *********.899*******************98736**********************9999999999999988333456679********** PP

  Fructosamin_kin 199 NaaltkdgepvifdPaayygdrEvdlamtelfggfp..sefyegYqsivpldegyeeRkelYqLYhlLnhlnlFgggylsqaqk 280
                      N+  ++d+++ ++dPaa  g+rE+dla + lfgg p  +++ ++Y++++pl +g++eR++l qL  lL h++lFg+ y++++  
       KIR64356.1 206 NVLWGADERAWLVDPAAHGGHRETDLAQLALFGGPPhhERIMAAYREAWPLADGWRERVPLHQLHLLLVHTALFGAAYRDAVGA 289
                      *********************************9662268**************************************998655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3  11.8   1.3e-14     8e-11      30     236 ..      59     262 ..      36     266 .. 0.77

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 1.3e-14
                 TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH..-S..........TTTB- CS
         APH  30 paraaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvd.pa..........alpla 116
                 p  ++ ++++e+a lr+L++ag+  vP v+        ++ + +++ +v++  +++        e++e++g+ laalh+++ pa          alp++
  KIR64356.1  59 PV-PEGFFAAEAAGLRWLREAGAvAVPDVVV-------ALPELLALDWVEPGEPTP--------EAAERFGRELAALHRAGaPAfgaewagfvgALPQD 141
                 44.6778999999999999999999999998.......555778889988888888........9***************8444666666666666666 PP

                 SHHCHTCCHHHHHHCHHHCCCGCCTCC.HHHHHHHHHHHHHHHH--S.......SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHC CS
         APH 117 dflaqdlellrqlesatarllaselld.lleeleeqvlaalaallpg.......elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlav 207
                   +++ ++++++  ++  ++l+  ++   l ++e ++ +++             ++p+  +HgDl pgN+l+ +d+     ++D   a+ g++  Dla 
  KIR64356.1 142 NTPDDGPWPAWFARRRLLPYLRMSVDSgALTAAETALVEQVV----ErvgefggDEPPARVHGDLWPGNVLWGADERAW--LVDPA-AHGGHRETDLAQ 233
                 666677777777777766666666666433333333333333....23444799*******************777777..***96.899********* PP

                 CHHHCSCHCCCHCHHHHHHHHCS-HHHHC CS
         APH 208 llrswtseldpeflaallrayeqeaglar 236
                 l+   + + +++  aa+ +a+  ++g+++
  KIR64356.1 234 LALFGGPPHHERIMAAYREAWPLADGWRE 262
                 **88999************9987788876 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.3e-05       0.2     260     287 ..     186     214 ..     162     221 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.3e-05
     DUF1679 260 vskvlGi.kkvlvhgDlwsaNiLfseeee 287
                 v ++ G   +  vhgDlw  N+L+ ++e 
  KIR64356.1 186 VGEFGGDePPARVHGDLWPGNVLWGADER 214
                 5555555556779***********99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2267.31
//
Query:       KIR64357.1  [L=355]
Description: molybdenum cofactor biosynthesis protein MoeA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-32  112.6   0.0    4.5e-30  104.2   0.0    2.2  1  Mob_synth_C  Molybdenum Cofactor Synthesis C
    2.3e-30  106.1   0.0    8.1e-30  104.4   0.0    1.8  2  Radical_SAM  Radical SAM superfamily
    8.8e-05   22.8   0.0    0.00013   22.2   0.0    1.2  1  Fer4_12      4Fe-4S single cluster domain
    0.00016   21.8   0.0    0.00024   21.2   0.0    1.2  1  Fer4_14      4Fe-4S single cluster domain
  ------ inclusion threshold ------
        0.1   12.7   5.6          3    7.9   0.1    3.7  4  CMD          Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> Mob_synth_C  Molybdenum Cofactor Synthesis C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.0   1.3e-33   4.5e-30       1     127 [.     192     337 ..     192     338 .. 0.85

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 1.3e-33
                  -EEEEEE---B-TTSSB--SSB--HHHHHHHHHHHS-EEEE-.-SS..................T-SSEEEEETTT--EEEEE-TTTS--GGG--EEE CS
  Mob_synth_C   1 ielrfIElmpvgegeewrekkvvsadeilerieerlalleak.ket..................kgpakrykikdgkgeiglIapvsepFCasCnRlR 79 
                  +elrfIE+mp++ ++ w++  +v+adeil+++++    +    + t                   +pa+ + +++g  ++g+I +v++pFC +C+R+R
   KIR64357.1 192 YELRFIEQMPLDAQHGWDRAAMVTADEILATLRTGGDARTRGdAGTgatrrtgfdltpdpaergAAPAETWLVDGGPARVGVIGSVTRPFCGDCDRTR 289
                  58*****************************987655543331111222333455555555557899999**************************** PP

                  E-TTSEEESSSS-SS-EEHHHHHHTT--HHHHHHHHHHHHHT----HH CS
  Mob_synth_C  80 ltadGklktCLfaeeeidlrdllregaseeeLkelikealarkkekhk 127
                  ltadG+++ CLfa+ee dlr +lr+ga+++eL++++++a++ k+++h 
   KIR64357.1 290 LTADGQVRACLFATEESDLRGALRAGADDDELARRWRAAMWGKRAGHG 337
                  ********************************************9985 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.0   2.3e-33   8.1e-30       2     166 ..      25     186 ..      24     187 .. 0.97
   2 ?   -1.2   0.0      0.66   2.3e+03      22      42 ..     207     227 ..     198     239 .. 0.78

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 2.3e-33
                  EEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpdeeklerlle 99 
                  + t  CnlrC++C   e   +   ++ ls +ei+++v+ + ++ gv ev ++ggepl +p  v ++++ a+l+ p  ri+++tng+ + ++ + +l+ 
   KIR64357.1  25 SLTDKCNLRCTYCMPAEGLPWLAGPQLLSDDEIVRLVRVAVKRLGVTEVRFTGGEPLIRPGVVGIVAAVAALE-PRPRISLTTNGLGL-DRLAPALRA 120
                  67899***********************************99999***************************7.**************.********* PP

                  TT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 100 lgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleellel 166
                  +g+drv+++l+++d  ++ +l+ r++ + +vl++l  +++ag+ +v+++ v+++G+nd+e  +ll++
   KIR64357.1 121 AGLDRVNVSLDTLDAARFARLT-RRDRLADVLAGLAGAAAAGLTPVKINSVLMRGVNDDEAPALLRF 186
                  **********************.88***********************************9999988 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.66
                  HHHHHHHHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  22 regrgrslsveeileevkelk 42 
                    +r+++++ +eil+ ++ + 
   KIR64357.1 207 GWDRAAMVTADEILATLRTGG 227
                  567888999999999999885 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   3.7e-08   0.00013      12     102 ..      27     117 ..      15     136 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 3.7e-08
     Fer4_12  12 vsgCnlsCkgCfnketwsfksgkef.tkelleeiiedlkk.esiegltllGGEPllpenaeallelvkevkeekpekdi.wlytgytleelskk 102
                 +  Cnl+C +C+  e     +g +  +++ + ++++ + k   ++++ ++GGEPl    ++ ++ +v  v +  p + i + ++g  l+ l ++
  KIR64357.1  27 TDKCNLRCTYCMPAEGLPWLAGPQLlSDDEIVRLVRVAVKrLGVTEVRFTGGEPLI---RPGVVGIVAAVAALEPRPRIsLTTNGLGLDRLAPA 117
                 678************99887776653677777877766651455************...9***********99995555155677777777665 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   6.8e-08   0.00024       5      90 ..      27     109 ..      24     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.8e-08
     Fer4_14   5 lsgCnlsCkgCdnketwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekkiwletngt 90 
                 + +Cnl C+ C   e     +g++  ++++  +l  +  ++    ++ +tGGePL+    + ++ +v  +    p  +i l tng+
  KIR64357.1  27 TDKCNLRCTYCMPAEGLPWLAGPQLLSDDEIVRLVRVAVKRLGVTEVRFTGGEPLIR---PGVVGIVAAVAALEPRPRISLTTNGL 109
                 579*********99988888888888887777777999999999***********76...99999999999999999999999986 PP

>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.77   2.8e+03      54      72 ..      51      69 ..      31      75 .. 0.59
   2 ?    4.9   0.2    0.0074        26      47      78 ..     154     186 ..     112     190 .. 0.84
   3 ?   -1.6   0.1       0.8   2.9e+03      53      67 ..     212     226 ..     209     235 .. 0.76
   4 ?    7.9   0.1   0.00085         3      36      70 ..     296     329 ..     292     334 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.77
                T--HHHHHHHHHHHHHHHS CS
         CMD 54 Gvteeeiaevlaqaaayag 72
                 ++++ei  ++++a+   g
  KIR64357.1 51 LLSDDEIVRLVRVAVKRLG 69
                4567777777777765555 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0074
                 HHHHHHTT--HHHHHHHHHHHHHHHSHHHHH.H CS
         CMD  47 traAleaGvteeeiaevlaqaaayagwpaar.a 78 
                 +++A  aG+t+ +i+ vl+ ++ ++  pa++  
  KIR64357.1 154 LAGAAAAGLTPVKINSVLMRGVNDDEAPALLrF 186
                 678999*************99999999988733 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.8
                 TT--HHHHHHHHHHH CS
         CMD  53 aGvteeeiaevlaqa 67 
                 a vt++ei ++l+ +
  KIR64357.1 212 AMVTADEILATLRTG 226
                 668999999888764 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.00085
                 HTT-HHHH.HHHHHHHHHTT--HHHHHHHHHHHHHH CS
         CMD  36 angceyCv.daHtraAleaGvteeeiaevlaqaaay 70 
                 ++ c +    + +r+Al+aG++++e+a   +++aa+
  KIR64357.1 296 VRACLFATeESDLRGALRAGADDDELA--RRWRAAM 329
                 6678886689999**************..8888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2775.56
//
Query:       KIR64358.1  [L=414]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-11   45.2   0.0    3.6e-11   44.0   0.0    1.6  1  Metallophos    Calcineurin-like phosphoesterase
    2.6e-05   24.5   0.0    5.7e-05   23.4   0.0    1.5  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
  ------ inclusion threshold ------
       0.53   10.5   1.9       0.97    9.6   1.9    1.4  1  DUF4418        Domain of unknown function (DUF4418)
        0.8   10.2   4.5        1.6    9.3   4.5    1.5  1  FtsX           FtsX-like permease family


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   7.9e-15   3.6e-11       1     202 [.     189     356 ..     189     358 .. 0.65

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 7.9e-15
                  EEEEEEESBTB..TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS..HHHHHHHHHHHHHHHHTSEE..EEEC-TTSCHHHHHHHHHHHHHHHH CS
  Metallophos   1 lrilvigDlHl..algggqlddllkllddllreekpdlvllaGDlvdrg..dlekellellaalvkypipv..ylllGNHegfeeellnkygylgifs 92 
                  lri+ ++D+Hl   +g ++ +++++++++l    ++dlv ++GDlvd++  +l ++ +    +l++++ ++  +++ GNHe ++ ++++  ++  + +
   KIR64358.1 189 LRIATVSDIHLgpLRGRAHTERIVAMINRL----DADLVAVVGDLVDGSvaELGEAAA----PLGNLRSRYgsFFVTGNHE-YYSGVEEWVREVDRIG 277
                  699**********99999999999999999....9**************544444344....44443334455********.6666666666555553 PP

                  HHHEHH........HCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCCHHHHHH....HHHHTTCSEEEEEESSESSCSSSCS CS
  Metallophos  93 epwrsd........aevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepgdewlkd....lekrekadwvivlgHsplyrgsgyl 178
                      ++        a+v++   +++       v  +  g                            +d    l  r++ ++v++l+H p+       
   KIR64358.1 278 LRVLQNvrqeirtpAGVLDLAGVND-------VTAAGTG------------------------LAAPADfaaaLGGRDPSRPVVLLAHQPVA------ 338
                  3333221211222222222222222.......2222222........................222222222355589**************...... PP

                  CCHHHHHHHHHHTTESEEEEESSS CS
  Metallophos 179 fgdealedllkkygvdlvisGHtH 202
                      a+e    k+gvdl +sGHtH
   KIR64358.1 339 ----AVE--AAKFGVDLQLSGHTH 356
                  ....555..999************ PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.3e-08   5.7e-05       2     128 ..     190     356 ..     189     361 .. 0.59

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.3e-08
  Metallophos_2   2 klaiiSDlH....snldaleavlealkevgvdaiihaGD......l.eeeepevleellelapvlaVrGNnD.....................eev 65 
                    ++a +SD+H    + ++ +e++++ +++ ++d++ ++GD      +  +e+   l +l++++    V GN++                     +  
     KIR64358.1 190 RIATVSDIHlgplRGRAHTERIVAMINRLDADLVAVVGDlvdgsvAeLGEAAAPLGNLRSRYGSFFVTGNHEyysgveewvrevdriglrvlqN-- 283
                    899**********999***********************54444313223334688888888**********8777664444443332222220.. PP

  Metallophos_2  66 veedvlreaaelgtdl............................peeaelelagek.....vlliHgdplgvkdalaellkeaeegsdvvvcGHtH 128
                                   +                            p++    l+g++     vll H+        +a+ +++a+ g+d+ ++GHtH
     KIR64358.1 284 ---------------VrqeirtpagvldlagvndvtaagtglaaPADFAAALGGRDpsrpvVLLAHQP-------VAA-VEAAKFGVDLQLSGHTH 356
                    ...............12222322222233344444444443333344444444444455555555554.......333.33335567788999998 PP

>> DUF4418  Domain of unknown function (DUF4418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.9   0.00022      0.97      37      84 ..       4      57 ..       1      61 [. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00022
     DUF4418 37 aelgvGivllvlgllalfv......kkkklrrglsiavillgvlviliptvlig 84
                ++++vG vl+v+gl++l++      ++++ rr+    vi++++l++l+p ++ g
  KIR64358.1  4 VVALVGFVLVVIGLIHLYLwkrlvaDTTTSRRLRRAGVIAAALLTLLVPATMAG 57
                7889***********8754222222567789999999************99877 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.5   0.00035       1.6      25      94 ..       5      96 ..       1      99 [. 0.91

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00035
        FtsX 25 illitlvalviGlgl....................gllaaqllsdvllssvfs..selkisidlitvliiivlllllallagllsiskilkk 94
                ++l+++v  viGl+                     g++aa ll  ++ + + +    l +   +  v++++++ ll+al+++ ++++ ++++
  KIR64358.1  5 VALVGFVLVVIGLIHlylwkrlvadtttsrrlrraGVIAAALLTLLVPATMAGtqNGLYWLAWPGYVWLALMFYLLVALAVLEVPMLVARRM 96
                567888888899888999*********************************999999************************98888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3070.50
//
Query:       KIR64359.1  [L=1062]
Description: ATPase AAA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-58  198.0   0.0    3.3e-30  105.7   0.1    2.1  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
    4.3e-40  137.4   0.0    6.8e-40  136.8   0.0    1.3  1  AAA_19           AAA domain
    6.2e-31  108.0   0.0    4.6e-22   78.9   0.0    2.1  2  UvrD_C           UvrD-like helicase C-terminal domain
      4e-09   36.2   0.0    9.5e-08   31.8   0.0    2.7  1  UvrD_C_2         UvrD-like helicase C-terminal domain
      5e-07   29.6   0.0    4.8e-06   26.4   0.0    2.6  1  AAA_30           AAA domain
    0.00029   20.6   0.0        0.4   10.4   0.0    3.2  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0078   16.0   0.0      0.027   14.2   0.0    1.9  1  PHP_C            PHP-associated
     0.0085   16.5   3.1       0.01   16.2   0.8    2.4  2  AAA_16           AAA ATPase domain


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0   6.3e-29   1.4e-25       4     131 ..     517     628 ..     514     636 .. 0.92
   2 !  105.7   0.1   1.5e-33   3.3e-30     219     314 ..     636     731 ..     628     732 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 6.3e-29
                    HHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCTT-HHHHHHHHHCTTSEEEEHHH CS
  UvrD-helicase   4 eqreaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessdderlrlalqnlseanisTlHs 99 
                     qr a+  +ggp+l++A++G+GKT++l++ri++l +e ++ p+r l++TFT++AaeEl++R+  +l+                  +++++++T+Hs
     KIR64359.1 517 MQRVAASAPGGPLLIVAGPGTGKTRTLTHRIAYLCAELNVFPERCLAITFTRRAAEELRHRLDGLLGPV----------------AEDITVGTFHS 596
                    67888888*********************************************************9975................89********* PP

                    HHHHHHHHHHGGTTSHTTTEEECHHHHHHCCH CS
  UvrD-helicase 100 fcqkilkkeanrigldpnfrildeedeedlkq 131
                    +++ il+++a  +gl  +fri+d+ +   +k 
     KIR64359.1 597 LGLTILRENAGTAGLPADFRIADDAERAAAKA 628
                    ************************99665555 PP

  == domain 2  score: 105.7 bits;  conditional E-value: 1.5e-33
                    HHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG--GGGGTB-THHHHHHHHHS CS
  UvrD-helicase 219 eyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyrilkllasgheelfmvGDpkQsIYgFRgAdielflkkkkdf 314
                     y   +++++++D++dll  ++ell+++ +l++++r r++ i++DEyQD + +Qy++l+ll+ +  +l+ +GDp+Q+IY+FRgAd++ fl++++df
     KIR64359.1 636 AYTALLRKRDLVDLDDLLTLPVELLRADRKLVQRYRDRWQWIFVDEYQDVDAVQYELLRLLSPADGNLCAIGDPDQAIYSFRGADVGYFLRFSQDF 731
                    68888999**************************************************************************************98 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.8   0.0     3e-43   6.8e-40       1     146 []     518     717 ..     518     717 .. 0.96

  Alignments for each domain:
  == domain 1  score: 136.8 bits;  conditional E-value: 3e-43
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae......atTiHrlal................ 77 
                 qr a+  ++ ++ll++aGpGtGKTr+l+h++a+l ++ +v pe++l+++ft+rAa+elr rl++l+++        T+H+l+l                
  KIR64359.1 518 QRVAA-SAPGGPLLIVAGPGTGKTRTLTHRIAYLCAELNVFPERCLAITFTRRAAEELRHRLDGLLGPvaeditVGTFHSLGLtilrenagtaglpadf 615
                 56666.8999**************************************************************9999*****99**************** PP

      AAA_19  78 ...............................ldfddlltealelle.eaeeekklqeee.llivDEfqdvdelqyrLlkallgekkklllvGDpdQliy 143
                                                +d+ddllt ++ell+ +++  +  ++++ +++vDE+qdvd +qy+Ll+ l + + +l+++GDpdQ+iy
  KIR64359.1 616 riaddaeraaakaeagedqaaytallrkrdlVDLDDLLTLPVELLRaDRKLVQRYRDRWqWIFVDEYQDVDAVQYELLRLLSPADGNLCAIGDPDQAIY 714
                 **********************************************86677788899*************************99988************ PP

      AAA_19 144 vfr 146
                 +fr
  KIR64359.1 715 SFR 717
                 *97 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.1e-09   2.5e-06       1     121 [.     737     874 ..     737     880 .. 0.84
   2 !   78.9   0.0   2.1e-25   4.6e-22     279     347 ..     945    1017 ..     911    1019 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.1e-09
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxx RF
      UvrD_C   1 ivLekNyRStksLlkaankflenilnrralekek..ktvekgekivvleaeteeeEaekiaatikall................ekneklediavLvRs 81 
                 ++L++NyRS++ +l aa + ++     r     +  +   +   +  + a++  +Ea+++++t+ +l+                +     +diavL+R+
  KIR64359.1 737 VRLNRNYRSSAPILAAAVQAIAPSSLVRGR-RLDpaRLDPEAPLVGRYAAASVADEADFVVRTVDDLVgglshrsldsgridgrSTSLSFSDIAVLYRT 834
                 579************999988555554222.233234444444788899*******************************99888888999******** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  82 nkdadkiskaLkkegipfnvvdeekfFkreeikdilaylk 121
                  ++a  i +aL + ++p+ + +  ++ +r+ +  i   l+
  KIR64359.1 835 DAQAAPIVDALARANVPVQKRSHDRLRDRPGVAAIARELR 874
                 *******************999999999998877765555 PP

  == domain 2  score: 78.9 bits;  conditional E-value: 2.1e-25
                  xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  279 eeskkk.ekipiiTiHqAKGlEFdvVflagleegtfPsyrskk...ekrleEEkRlfYVaiTRAkkrLfisys 347 
                  ++++   e ++++T+H+AKGlEF+vVfl+g+e+g +P  +  +   e+ ++EE+Rlf+V++TRA++rL++s +
  KIR64359.1  945 DALDPRaEAVTLLTLHAAKGLEFPVVFLVGCEDGLLPLRWPGStpdEDAIAEERRLFFVGLTRAQDRLYVSHA 1017
                  34444459*****************************66554477899**********************975 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   4.2e-11   9.5e-08       2      51 ..     954    1014 ..     953    1015 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 4.2e-11
    UvrD_C_2    2 ayaltihkaQGsefpaVivfdpdlaaarmgel................rrrlLYtavTRAreklil 51  
                  ++ lt h a+G+efp+V+++  +        l                 rrl+++++TRA+++l++
  KIR64359.1  954 VTLLTLHAAKGLEFPVVFLVGCE---DGL--LplrwpgstpdedaiaeERRLFFVGLTRAQDRLYV 1014
                  6789***************6533...211..12244566777788899****************98 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   2.1e-09   4.8e-06      15     170 ..     523     758 ..     513     765 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.1e-09
      AAA_30  15 tsgdrvavltGpAGtGKttalkalreaweaa.g...grviglAptgkaAkvLaeelg.........ieastiakllkrlk................... 81 
                 + +    ++++++GtGKt +l++  + + a+ +   +r ++++ t +aA++L++ l+         i+  t ++l  +                     
  KIR64359.1 523 SAPGGPLLIVAGPGTGKTRTLTHRIAYLCAElNvfpERCLAITFTRRAAEELRHRLDgllgpvaedITVGTFHSLGLTILrenagtaglpadfriadda 621
                 334456799************9987777777579999****************7444333232222566666666433325777888888888888888 PP

      AAA_30  82 .............................................grarlepg.tllivDEagmvdtkqlaallkaaekagakvilvGDerQl....as 130
                                                                +r++++ + + vDE   vd+ q  +ll+ ++ a+  +  +GD++Q       
  KIR64359.1 622 eraaakaeagedqaaytallrkrdlvdlddlltlpvellradrklV-QRYRDRwQWIFVDEYQDVDAVQY-ELLRLLSPADGNLCAIGDPDQAiysfRG 718
                 88888888999999999999999*******************9974.4556666************9997.699999999************6322244 PP

      AAA_30 131 VeaGgvlrdlveaagigtaeLtevvRqkeseeraaalalr 170
                  + G  lr  ++ ++++ ++L+ ++R + +  +aa++a++
  KIR64359.1 719 ADVGYFLRFSQDFTDARLVRLNRNYRSSAPILAAAVQAIA 758
                 5557777777766788999999999998899998888875 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.077   1.7e+02       3      48 ..     531     577 ..     529     591 .. 0.76
   2 ?    4.2   0.0     0.014        32      64     107 ..     675     719 ..     652     757 .. 0.77
   3 !   10.4   0.0   0.00018       0.4     183     231 ..     950    1013 ..     933    1015 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.077
  Viral_helicase1   3 vhGvpGcGKStlirkllrts.liltvnrptaelltegkpklpnlsvr 48 
                      + + pG GK++ + + +      l+v ++++ ++t  +  ++ l++r
       KIR64359.1 531 IVAGPGTGKTRTLTHRIAYLcAELNVFPERCLAITFTRRAAEELRHR 577
                      5567******9999988766788888888888888777555555554 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.014
  Viral_helicase1  64 kililDEylllhaGyilllaalskak.lvilfGDplQipfhsrna 107
                      + +++DEy+ ++a + +ll  ls a+ +++++GDp Q  ++ r a
       KIR64359.1 675 QWIFVDEYQDVDAVQYELLRLLSPADgNLCAIGDPDQAIYSFRGA 719
                      6689********98888855555554278889*****98887655 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00018
  Viral_helicase1  183 r....evttvhevqGltfdkVtlvllketdlelis............esrenllvAlTRhrkslv 231 
                       r      +t h + Gl+f++V lv  ++   + ++            e+r  ++v+lTR+ ++l+
       KIR64359.1  950 RaeavTLLTLHAAKGLEFPVVFLVGCEDGL-LPLRwpgstpdedaiaEERRLFFVGLTRAQDRLY 1013
                       334444899***************996643.334468888888888888***********99986 PP

>> PHP_C  PHP-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.2e-05     0.027      17      54 ..     234     270 ..     231     271 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
       PHP_C  17 pgtgGSDAHrleeVGrayTefeepiatpdelleaireg 54 
                   + +SDAH+++ + r +T+f++  ++  ++ ea+r g
  KIR64359.1 234 QLVSNSDAHSPPALAREATVFATG-RDYFAIREALRTG 270
                 56899****************444.4456777777766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.8   4.6e-06      0.01      14     159 ..     515     697 ..     510     706 .. 0.57
   2 ?   -1.9   0.1       1.7   3.9e+03      65      94 ..     745     775 ..     726     900 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.6e-06
      AAA_16  14 salervrsgrp.elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqllde....aesaeleawrekleeala 106
                 +a++rv+++ p + +l++  +G+GK++ +++   +l+++    l+   +++  ai++    a+ l r      l+      ae+  ++ ++   ++ l+
  KIR64359.1 515 DAMQRVAASAPgGPLLIVAGPGTGKTRTLTHRIAYLCAE----LNVFPERC-LAITFTRrAAEEL-R----HRLDGLlgpvAEDITVGTFHSLGLTILR 603
                 678899999999999999999********88888*****....44444444.1112222233333.3....2222223334333333333333333333 PP

      AAA_16 107 .....................avpelagaea............srllellkrllallsrder........plvlvlDdlqwadeaslqllaaLl 159
                                      a+++ ag++              +l +ll+  ++ll+ d++           +++D+ q++d+ + +ll++L 
  KIR64359.1 604 enagtaglpadfriaddaeraAAKAEAGEDQaaytallrkrdlVDLDDLLTLPVELLRADRKlvqryrdrWQWIFVDEYQDVDAVQYELLRLLS 697
                 5555555555555554443442222222222566667777777555566666665555544444444442267899999999999988888876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.7
      AAA_16  65 saipysa.laqalareellrqlldeaesael 94 
                 s++p +a  +qa+a ++l+r    +++  ++
  KIR64359.1 745 SSAPILAaAVQAIAPSSLVRGRRLDPARLDP 775
                 4466655577777777777776666333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1062 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 6765.48
//
Query:       KIR64360.1  [L=164]
Description: hypothetical protein TK50_01300 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1194.29
//
Query:       KIR64361.1  [L=411]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-21   76.4   1.0    7.4e-21   75.3   1.0    1.6  1  AAA_16       AAA ATPase domain
      6e-05   23.3   0.1     0.0014   19.0   0.1    2.2  1  AAA_22       AAA domain
     0.0042   17.0   0.0     0.0089   15.9   0.0    1.5  1  MarR         MarR family
     0.0054   16.5   0.2      0.015   15.0   0.2    1.7  1  AAA_30       AAA domain
     0.0068   16.7   0.0      0.032   14.5   0.0    1.9  1  AAA_19       AAA domain
     0.0074   16.3   0.1      0.051   13.6   0.1    2.1  2  AAA_14       AAA domain
  ------ inclusion threshold ------
      0.026   13.4   0.1        0.1   11.4   0.0    1.8  2  DUF2791      P-loop Domain of unknown function (DUF2791)
      0.031   14.7   0.0          6    7.3   0.0    2.3  2  AAA          ATPase family associated with various cellular a
       0.05   13.5   0.0       0.39   10.6   0.0    2.0  1  ATPase_2     ATPase domain predominantly from Archaea
       0.07   12.3   0.0       0.12   11.6   0.0    1.3  1  DAP3         Mitochondrial ribosomal death-associated protein
        0.1   12.5   0.0       0.17   11.8   0.0    1.3  1  RsgA_GTPase  RsgA GTPase


Domain annotation for each model (and alignments):
>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   1.0   4.6e-24   7.4e-21       2     170 .]      19     214 ..      18     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 4.6e-24
      AAA_16   2 lvGReeeleqLlsalervrsgrp.elvllsGesGvGKsslvrellralekdggif..lrgkcdql...esaipysalaqalareellrqllde...... 88 
                 l GR++el+ +  +ler+++grp ++++l+G +GvGK+ l+++l+ ++ ++ + +  ++++ dq+   + a+++ + ++ la ++   +  d+      
  KIR64361.1  19 LAGRGRELDVFDVVLERIARGRPeRSLMLTGLRGVGKTVLLNTLRSQAITRLWGTgkIEARPDQSlrrPVAAALHMAVRELAPRHRAPDRIDAflgvlk 117
                 89********************************************99999666677999999995442223334433333344555555555666677 PP

      AAA_16  89 .............aesaeleawrekleealaavpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrlles.k.pllvv 170
                              a+ +++++w+  ++  +a +++++g+++ +l ell++++a ++  +  + +++D++q++ +++ ++l+a +++l++ + pl+vv
  KIR64361.1 118 afaqrsaptgragAAPKLRDRWQPGIDVPAATGRADSGDIEIDLVELLSDAAAVAADVGTGIAVFIDEMQDLGPEDVSALCAACHELSQlGaPLIVV 214
                 777779999999999999**********************************999998999**************************9997799997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   8.3e-07    0.0014       4     129 ..      41     215 ..      37     221 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 8.3e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.................erpevv...fvtlpsstsskdllrellralglelka............ 70 
                  +++l++tG  G+GKT+ll++l++q+      ++                 +   v+   ++ + ++  +                a            
  KIR64361.1  41 PERSLMLTGLRGVGKTVLLNTLRSQAI-----TRlwgtgkiearpdqslrrP---VAaalHMAVRELAPRHR--------------Apdridaflgvlk 117
                 5789*********************82.....22335556776666664321...22233444443332222..............1333333333333 PP

      AAA_22  71 ....................................erlsseellealeqalrarav...ielliiDEaqhlrseealeeL.rsllnlsrkgvqliLvG 129
                                                     +++ + +l+e+l +a+  +a+     ++ iDE+q l  +e ++ L   +++ls+ g +li+vG
  KIR64361.1 118 afaqrsaptgragaapklrdrwqpgidvpaatgradSGDIEIDLVELLSDAAAVAADvgtGIAVFIDEMQDL-GPEDVSALcAACHELSQLGAPLIVVG 215
                 346666667999999999999999999999998886333333333444444444444665688889999999.87777766577888788888888888 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.5e-06    0.0089      20      48 ..     360     388 ..     353     391 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.5e-06
                 HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  20 vseLakklgvskstvtrvldrLekkGlie 48 
                  +e+a++lg ++++++ + d+L+kkGli+
  KIR64361.1 360 TAEIARALGRKPASLSPARDALIKKGLIY 388
                 579*************************8 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   9.3e-06     0.015      17     123 ..      41     215 ..      33     217 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.3e-06
      AAA_30  17 gdrvavltGpAGtGKttalkal.reaweaa.g.....................grviglAptgkaAkvLaeelgi............eastiakllkrl 80 
                 ++r  +ltG  G GKt +l++l  +a+++  g                     + v  lAp ++a +++ + lg+            +a    kl +r+
  KIR64361.1  41 PERSLMLTGLRGVGKTVLLNTLrSQAITRLwGtgkiearpdqslrrpvaaalhMAVRELAPRHRAPDRIDAFLGVlkafaqrsaptgRAGAAPKLRDRW 139
                 5667899***************667778777799******************999**************987776555555555555777777777777 PP

      AAA_30  81 k..............................grarlepgtllivDEagmvdtkqlaallkaaeka...gakvilvG 123
                 +                               +a++ +g  + +DE+  ++ +++ al +a+++    ga +i+vG
  KIR64361.1 140 QpgidvpaatgradsgdieidlvellsdaaaVAADVGTGIAVFIDEMQDLGPEDVSALCAACHELsqlGAPLIVVG 215
                 7999999999999999999999999999998667899999999*******99999999988877334478888877 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     2e-05     0.032       7     136 ..      39     215 ..      34     216 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2e-05
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkp...................eeillvaftgrAakelrerlaalgae....atTiHrlal..... 77 
                   +e+ l++t+  G GKT +l++  + ++ +                          +  +a+ +rA +++   l +l+a     a T           
  KIR64361.1  39 GRPERSLMLTGLRGVGKTVLLNTLRSQAITRLWGTGkiearpdqslrrpvaaalhMAVRELAPRHRAPDRIDAFLGVLKAFaqrsAPTG----Ragaap 133
                 66788899999999999999987655444433221134558899998888888877777788888888888887744444344553333....133346 PP

      AAA_19  78 ..................ldfddlltealelle.eaeeekklqeeellivDEfqdvd.elqyrLlkallgekkk....lllvG 136
                                    d  d++ + +ell   a+   ++  + ++++DE+qd+  e   +L  a+  e  +    l++vG
  KIR64361.1 134 klrdrwqpgidvpaatgrADSGDIEIDLVELLSdAAAVAADVGTGIAVFIDEMQDLGpEDVSALCAACH-ELSQlgapLIVVG 215
                 7777777777777777767777777777888886445567786777***********555555555544.4444345566666 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   3.1e-05     0.051       4      26 ..      44      66 ..      42      83 .. 0.86
   2 ?   -0.4   0.0      0.67   1.1e+03      65      76 ..     178     189 ..     154     216 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.1e-05
      AAA_14  4 ilvitGaRrvGKTtllkqlikel 26
                 l++tG+R vGKT+ll++l ++ 
  KIR64361.1 44 SLMLTGLRGVGKTVLLNTLRSQA 66
                689*************9987655 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.67
      AAA_14  65 ktylflDEiqev 76 
                    +f+DE+q +
  KIR64361.1 178 GIAVFIDEMQDL 189
                 4569*****975 PP

>> DUF2791  P-loop Domain of unknown function (DUF2791)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.3e-05       0.1      29      92 ..      21      85 ..      10     124 .. 0.82
   2 ?   -0.9   0.2      0.35   5.7e+02     223     251 ..     162     189 ..     157     190 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.3e-05
     DUF2791 29 Grereiealledlervaeggaa.frfirGeYGsGKtFllqllreralergfvvaeadlsperrLh 92
                Gr re ++++  ler+a+g+ +   +++G  G GKt ll++lr++a  r   + +++  p++ L 
  KIR64361.1 21 GRGRELDVFDVVLERIARGRPErSLMLTGLRGVGKTVLLNTLRSQAITRLWGTGKIEARPDQSLR 85
                999****************976155789********************99999999999998887 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.35
     DUF2791 223 ydylkllaafvrkaGykGLlvvlDElvnl 251
                 ++ l   aa+ +++G +G+ v++DE++ l
  KIR64361.1 162 VELLSDAAAVAADVG-TGIAVFIDEMQDL 189
                 566777788888888.7********9876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.016        26       1      21 [.      45      65 ..      45     101 .. 0.86
   2 ?    7.3   0.0    0.0037         6      48     109 ..     163     217 ..     143     247 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.016
                EEEESSTTSSHHHHHHHHHHH CS
         AAA  1 vllyGppGtGKTllakavake 21
                ++l+G  G+GKT l + + ++
  KIR64361.1 45 LMLTGLRGVGKTVLLNTLRSQ 65
                5899*********98877655 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0037
                 HHHHHHHHTS....TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEE CS
         AAA  48 elfkeakeka....kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigat 109
                 el+++a + a    +   +fiDE+  l++++           v++L ++  ++++  +++iv+ga+
  KIR64361.1 163 ELLSDAAAVAadvgTGIAVFIDEMQDLGPED-----------VSALCAACHELSQLGAPLIVVGAG 217
                 555555444456644488*************...........**************9999999986 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00024      0.39      11      40 ..      33      62 ..      22     197 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00024
    ATPase_2 11 leeilerepneiyfiYGpegsGKtaLlkei 40
                le+i++  p++ ++++G +g+GKt Ll+ +
  KIR64361.1 33 LERIARGRPERSLMLTGLRGVGKTVLLNTL 62
                7899999*******************9864 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.2e-05      0.12      15      50 ..      33      69 ..      22      73 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.2e-05
                TTS.-SSS---EEEEE-SSSSSTTTTHHHHHHHGGGS CS
        DAP3 15 kka.dkkkkvkrlvltGekgsGKSvlLlqalayAlek 50
                 +   + ++   l+ltG +g+GK+vlL+ +   A+++
  KIR64361.1 33 LERiARGRPERSLMLTGLRGVGKTVLLNTLRSQAITR 69
                4444677888999**************9988888776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0001      0.17      97     125 ..      40      68 ..      30      83 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0001
                  CTTSEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallpelel 125
                    ++  +l G  GvGK+ L+n+l++++ +
   KIR64361.1  40 RPERSLMLTGLRGVGKTVLLNTLRSQAIT 68 
                  5567889*****************98644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2980.84
//
Query:       KIR64362.1  [L=181]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-10   39.6   0.0    5.6e-10   39.4   0.0    1.1  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    3.7e-09   36.8   0.0    4.5e-09   36.6   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.3e-06   27.9   0.0    3.2e-06   27.5   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0062   16.5   0.0      0.011   15.6   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   1.2e-13   5.6e-10      11     126 ..      15     134 ..       5     136 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 1.2e-13
                     HHHHHHHHHHTT----H.....HHHHHHHHHHT..TSEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHH CS
  Acetyltransf_9  11 devlellkyaFqdeespl..e.eireyfrklle..esrvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLlarale 100
                       v ++l +aF++ +  +  e  + e +r +    ++ +++ae++ge+vg + l++++++  G + +a +++ Vavap+ ++ g+ ++ +++al+
      KIR64362.1  15 GPVRRVLTAAFARPDVSTppEvGLVEDLRGTDAwiPELAMVAEYGGEVVGYALLTRVHVRDDGGSAPALALGPVAVAPHRQRVGHGTAVVQAALD 109
                     5566677777777666665533333333322223356789******************************************************* PP

                     HHHHTT--EEEE--SSHHHHHTTT-E CS
  Acetyltransf_9 101 emreegqplsllfPssipiYrrfGye 126
                      + e g++l++  +  +++YrrfG+ 
      KIR64362.1 110 AATELGERLVVVLGD-PGYYRRFGFT 134
                     **************9.********97 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0     1e-12   4.5e-09      24     117 .]      45     133 ..      17     133 .. 0.81

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1e-12
                     HHHHHHSTTCEEEEEEETTEEEEEEEEEEEET....TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE.EEEEETTEHHHHHHHH CS
  Acetyltransf_1  24 feesfsleaegllvaeedgeliGfisllkipd....ekggvayieslaVspeyrgkGlGsaLlealeerareegikki.vlaveedndaairlYe 113
                        +   ++e   vae++ge++G++ l+ +       + +  ++  +aV+p +++ G G+a ++a+++ a e g + + vl       +  ++Y+
      KIR64362.1  45 TDAW---IPELAMVAEYGGEVVGYALLTRVHVrddgGSAPALALGPVAVAPHRQRVGHGTAVVQAALDAATELGERLVvVL-------GDPGYYR 129
                     5566...7888889***********8888888999*88899***************************9999988665233.......3367998 PP

                     HTTE CS
  Acetyltransf_1 114 klGF 117
                     ++GF
      KIR64362.1 130 RFGF 133
                     8999 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   7.1e-10   3.2e-06       6      75 ..      54     134 ..      45     135 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 7.1e-10
                     EEEEETTEEEEEEEEEEES..........TCTEE...EEE-GGGTTSSHHHHHHHH...TT..SEEEEE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7   6 fVaeddgkivGfialslld..........aeitr...laVdpeyrgkGiGraLlea...ae..kgiile.qlelnaekaikfYeklGFe 75 
                      Vae +g++vG++ l+++                   +aV+p+ ++ G G+a ++a   a+   g +   ++ l +    ++Y+++GF+
      KIR64362.1  54 MVAEYGGEVVGYALLTRVHvrddggsapaL---AlgpVAVAPHRQRVGHGTAVVQAaldAAteLG-E-RlVVVLGD---PGYYRRFGFT 134
                     59************9999998877665433...1567******************8444113444.2.23345544...78*******8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.5e-06     0.011      33     111 ..      53     138 ..      49     142 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.5e-06
  Acetyltransf_10  33 llvaeeggkivGvi.....elrdgs..........hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavge 111
                       +vae gg++vG++                      ++ ++V+p+ ++ G g+a ++a++++a + g +  + v  +p   ++Y+++GF++ ++
       KIR64362.1  53 AMVAEYGGEVVGYAlltrvH----VrddggsapalALGPVAVAPHRQRVGHGTAVVQAALDAATELGER-LVVVLGDP---GYYRRFGFTRADR 138
                      689***********555333....244559***999999************************777666.66666555...6899999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1273.82
//
Query:       KIR64363.1  [L=181]
Description: DoxX family protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-15   58.1   1.0      2e-15   57.1   1.0    1.5  1  DoxX       DoxX
    4.3e-05   23.7   0.0    6.2e-05   23.2   0.0    1.2  1  HR_lesion  HR-like lesion-inducing


Domain annotation for each model (and alignments):
>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   1.0   2.3e-19     2e-15       3      84 ..       6      99 ..       4     100 .. 0.84

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 2.3e-19
        DoxX  3 lllRlllgvlfiahGlqkltg............fglegtaaslaalglpppellaylaalvElvgglllllGlltRlaAlalavtllvatltvh 84
                 l+R++l+++f+++G+  l++             +++   + + +  ++ +e l +++a+++lvggl+l+ G +tR aAl+la tl+++t + h
  KIR64363.1  6 SLARVMLSGIFVVSGARNLQHpgrlvpaakpvtDRVTPLLQQVSPRIPTDTETLIRANAATQLVGGLMLATGKFTRPAALLLAGTLIPTTAAGH 99
                589*****************998887555544434444555555777777****************************************9888 PP

>> HR_lesion  HR-like lesion-inducing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     7e-09   6.2e-05       4     133 ..       4     128 ..       1     131 [. 0.77

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 7e-09
   HR_lesion   4 vsfiGrvlfasvfllsawqdyaefgadggpaekalkPkfnllskkvskalglavpaldikhlvaaliilkglggLlfilgssl.gaylLll.yqaiatv 100
                 v  + rv+ + +f++s  ++ +       pa+k ++ ++  l ++vs ++       d  +l+ a  + + +ggL+   g++  +a lLl+ +++ +t 
  KIR64363.1   4 VRSLARVMLSGIFVVSGARNLQH-PGRLVPAAKPVTDRVTPLLQQVSPRI-----PTDTETLIRANAATQLVGGLMLATGKFTrPAALLLAgTLIPTTA 96 
                 66778888888888888887654.44556777777777776666666554.....458999********************975566666515666778 PP

   HR_lesion 101 vlydfynydldtkeflrlllkfvqnlalvGaLL 133
                   + f+n   d +e +++ ++f++nl l+G+LL
  KIR64363.1  97 AGHPFWNS-ADPAERMQNQVHFLKNLGLFGGLL 128
                 88999996.68999999***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1427.30
//
Query:       KIR64364.1  [L=481]
Description: hypothetical protein TK50_01325 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-58  198.0  31.4    1.9e-58  198.0  31.4    3.5  4  GT87      Glycosyltransferase family 87
     0.0082   16.3   1.8       0.78   10.0   0.1    3.3  2  TMEM238   TMEM238 protein family


Domain annotation for each model (and alignments):
>> GT87  Glycosyltransferase family 87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.6     0.033   2.9e+02     128     215 ..      26      46 ..      12      76 .. 0.46
   2 !  198.0  31.4   2.2e-62   1.9e-58       1     239 []      84     339 ..      84     339 .. 0.92
   3 ?   -1.6   0.1       0.2   1.8e+03     195     216 ..     346     367 ..     341     383 .. 0.57
   4 ?    1.1   0.2      0.03   2.7e+02     201     223 ..     444     466 ..     391     477 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.033
        GT87 128 alaaaaatalvltalpllllppssleyfletlfdtseriaedvgnqsllslagllaralalglsavtllwlvlvllvvalaavaawrl 215
                 +++ a+++a                                                                    va aa++a+ +
  KIR64364.1  26 TAVRAGVIAT-------------------------------------------------------------------VAYAAWLAIGA 46 
                 2222222222...................................................................22222222222 PP

  == domain 2  score: 198.0 bits;  conditional E-value: 2.2e-62
        GT87   1 FtYPPfaallfaplallpyglalalwallnlaalllalrlllrrlgral......asavalalllaalalepvlstlgfGqinllllllvlldllllrr 93 
                 FtYPPf+al+++p+al+p+++a++l al+++ al+l+l+ llr +  +l       + +a+   ++a+a+ep ++tlg+Gq+nlll++l+++dl +lr+
  KIR64364.1  84 FTYPPFGALVMLPMALVPVEVAGWLNALASIGALALVLAGLLRPIVDRLgwplwyTVGIAT---PMAIAIEPGRETLGYGQVNLLLFALIMADLIGLRW 179
                 9********************************************9999987744444444...56*******************************96 PP

        GT87  94 r.rpl...................laGlliGlaaaiKltPalfllylllrrrwralaaaaatalvltalpllllppssleyfletlfdtseri..aedv 170
                 r r +                   +aG++iGla+a+KltPalf++yl+++r+wra+a+a++t++++t+++++l++++s++yf ++l++t er+  a+++
  KIR64364.1 180 RaR-RgtrfddavgplrrfvfsgaWAGVGIGLATAVKLTPALFVAYLVITRQWRAAATAVGTTIGVTLAGFALVGAESRAYFGGVLWQT-ERVgaADMT 276
                 641.24555666666666799999*****************************************************************.********* PP

        GT87 171 gnqsllslagllaralalgls..avtllwlvlvllvvalaavaawrlr.rrerllalaaallvallalLvsP 239
                  nqs   lagllar   l++s   ++llwl + +lv+al++ +a+ +r ++++l+a++   lv+l+a +vsP
  KIR64364.1 277 PNQS---LAGLLAR---LYDSieTPGLLWLSFSVLVLALGLSRAVSARaDGDELTAFT---LVGLTANVVSP 339
                 ****...*******...8884457************************999*******...**********9 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.2
        GT87 195 llwlvlvllvvalaavaawrlr 216
                 l+w++ +++v+a aa++ + + 
  KIR64364.1 346 LVWVIPAVIVLADAALRRREAS 367
                 4555555555554444444333 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.03
        GT87 201 vllvvalaavaawrlrrrerlla 223
                  l+v+++++vaa+ +r ++++++
  KIR64364.1 444 SLAVALIVLVAALPWRPGAEPAF 466
                 33444444444444444455444 PP

>> TMEM238  TMEM238 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   8.7e-05      0.78       9      42 ..      30      64 ..      25      67 .. 0.88
   2 !    3.8   0.3    0.0072        65      36      61 ..     120     145 ..      90     147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 8.7e-05
     TMEM238  9 lavvfdvvGlvlLlvGifael.lfgDllvytGali 42
                 +v+  v+ ++ L +G f++  +f D+ +y Ga++
  KIR64364.1 30 AGVIATVAYAAWLAIGAFGRPyNFFDMKIYHGAVV 64
                689999999999*******988***********97 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0072
     TMEM238  36 vytGaliiflSLlwwvlWYtgnievs 61 
                 v++G l  ++  l+w lWYt+ i ++
  KIR64364.1 120 VLAGLLRPIVDRLGWPLWYTVGIATP 145
                 55555555666689******999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3612.28
//
Query:       KIR64365.1  [L=143]
Description: molybdenum cofactor biosynthesis protein MoaE [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-35  119.7   3.6    8.2e-35  119.5   3.6    1.0  1  MoaE      MoaE protein


Domain annotation for each model (and alignments):
>> MoaE  MoaE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   3.6   4.6e-39   8.2e-35       1     113 []      12     123 ..      12     123 .. 0.98

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 4.6e-39
                 EESS---HHHHHHHH--TT--EEEEEEEE------TS-EEEEEECC-HHHHHHHHHHHHHHHHCCCTTSEEEEEEE-EEEETTSEEEEEEEEESSHHHH CS
        MoaE   1 lteepldvaeiealvaspkaGAvvlFvGtvRdsfdgkkvteLeyeayepmaektleeiaeearerwelervavvHrlGelevgeasvvvavssahRkea 99 
                 +t+epld+a++ea+va+++aGAvv+F G+vRd+ +g+ v +Leye + p+a ++l+e+a+e+++++++ +vav Hr+G+l +g+a++v+avs+ahR++a
  KIR64365.1  12 VTTEPLDLAAHEAAVADRRAGAVVSFQGVVRDHDHGRAVLSLEYEGH-PSAAAVLREVAAEVAADPDVYAVAVSHRVGPLVIGDAALVAAVSTAHRAAA 109
                 689******************************99************.*************************************************** PP

                 HHHHHHHHHHHHHH CS
        MoaE 100 feaceylidelKkr 113
                 f+ac++l+de+K+r
  KIR64365.1 110 FAACARLVDEVKAR 123
                 ************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1102.31
//
Query:       KIR64366.1  [L=420]
Description: molybdenum cofactor biosynthesis protein MoeA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-28   99.5   1.5    1.6e-28   99.5   1.5    2.2  3  MoeA_N         MoeA N-terminal region (domain I and II)
    1.3e-15   57.3   0.0    2.4e-15   56.5   0.0    1.4  1  MoCF_biosynth  Probable molybdopterin binding domain
    3.3e-10   40.0   0.2      1e-09   38.4   0.2    1.9  1  MoeA_C         MoeA C-terminal region (domain IV)
  ------ inclusion threshold ------
      0.027   14.5   0.0       0.05   13.6   0.0    1.4  1  ADH_zinc_N     Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> MoeA_N  MoeA N-terminal region (domain I and II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   1.5   3.6e-32   1.6e-28       4     157 .]      21     173 ..      19     173 .. 0.78
   2 ?   -1.4   0.0      0.39   1.7e+03     124     154 ..     216     245 ..     198     248 .. 0.74
   3 ?   -2.5   0.0      0.85   3.8e+03      50      58 ..     387     395 ..     385     407 .. 0.67

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 3.6e-32
                 HHHHHHHHHH-HH...-EEE.EEGGCG-TT-BBSS-EE-SS-BSSS-EESSSEEEEEEBTTB--...........-S---TT-.EEEE-TTSB--TT-- CS
      MoeA_N   4 eealaiilaalel...eeee.vplaaealgrvlaedvvApedvPpfdnSamDGYAvraeagsgaseeepsaageeperllpgg.avrimTGaplPegad 97 
                 eea++++ a   l    +++  pl a++ g++lae+++ + d+P+f +S +DG+Avr +  ++   +  + ag +p++l   g +v+i+TGa++Peg++
  KIR64366.1  21 EEARSRVYAVG-LaaaLPAVgRPL-ADTDGHTLAEPLTTRTDLPAFPTSSVDGWAVRGNGPWRV--VGRVLAGGSPAPLTDDGtTVEIATGAMVPEGVT 115
                 56666543332.112333444789.9999***************************98888887..333556666666666666*************** PP

                 EEEEGGGE..E....EETTE.S--STTTTEE-TTSSB-TTSEEE-TTBB--CCCHHHHHHCT CS
      MoeA_N  98 aVvpvEdte.eeeaketvev.kavkpgenvrraGedikaGevllragtrltpaeigllasvG 157
                 a+++vE+ + +   ++  +v  +++p    r+ Ge+ +aGe ll+agt ++pa igl+as+G
  KIR64366.1 116 AILRVEESTrT---AD-GRVaGTPRPSPEWREPGEEARAGEELLPAGTPVDPAVIGLAASCG 173
                 *******8531...12.2224566677789******************************98 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.39
                 TEE-TTSSB-TTSEEE-TTBB--CCCHHHHH CS
      MoeA_N 124 nvrraGedikaGevllragtrltpaeiglla 154
                   rr G+ ++  +v+ +  + l + ++++l 
  KIR64366.1 216 WLRRYGCQVRPADVVGPVADTLPA-HVAALR 245
                 589999999999999999888854.455544 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.85
                 SSEEEEEEB CS
      MoeA_N  50 mDGYAvrae 58 
                  DG+Av  +
  KIR64366.1 387 ADGFAVIRP 395
                 69***9433 PP

>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   5.3e-19   2.4e-15       2     142 ..     187     329 ..     186     331 .. 0.89

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 5.3e-19
                    EEEE-HHHH......TTSSGBHHHHHHHHHHHTTSEEEEEEEEE-...SSHHHHHHHHHHHHHTSSEEEEESS-SSSTT--HHHHHHHHHSEE-HH CS
  MoCF_biosynth   2 vitvGdell......sgkieDtngpllaellkelgvevskytvvp...DdeeeikeallaaleeadviittGGtGptpdDvtpealaklfekeleg 88 
                     ++ Gdell      +g+++D+ gp + ++l+++g++v+   vv+   D   + ++al+aal+ ad++ ttGGt  +p D+ + +l++l+ +    
     KIR64366.1 187 LLVFGDELLtsgppaAGRVRDALGPAVPAWLRRYGCQVRPADVVGpvaDTLPAHVAALRAALATADLVCTTGGTMHGPVDHLHPTLEALGAD---- 278
                    6899**********************************998886523388888888889999999**************************8.... PP

                    HHHHHHHHHHHHCCTTSHGGGGGGE.EETTE.EEEE-SSHHHHHHHHHHHHHGGH CS
  MoCF_biosynth  89 feeafrrvslkpgkpvgvapgailsravgkt.iigLPGspkavkealeeillpal 142
                       +++ v+ +pg p+++a+++  ++  +   + gLPG+p+++ +al  ++ p l
     KIR64366.1 279 --YVVNTVAVRPGFPMLLARLVDPDG--RVRfVAGLPGNPQSAIVALVSLVAPLL 329
                    ..*******************65554..445466*************99998887 PP

>> MoeA_C  MoeA C-terminal region (domain IV)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.2   2.2e-13     1e-09       2      72 .]     343     410 ..     342     410 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 2.2e-13
                 EEESS-EE--SSS-EEEEEEEES-S-EEEEEE-S---TT-GGGCTT--EEEEE-TT--EE-TT-EEEEEE- CS
      MoeA_C   2 arlaedlksdpgrreflRvilteedgeyvaeptgkqgSglLsslaeAnglivipegtegleaGeeVevill 72 
                 a+lae+++  ++ +++  v+l+  +g  +a+p+++ gS++L+ la+A+g++vi +g +  e+G+ V+v +l
  KIR64366.1 343 ATLAEAVPGRGDYTHLALVRLDRVAG--TAHPVRHVGSAMLRGLAGADGFAVIRPGST-GEPGARVPVVPL 410
                 7899******************8877..7****************************9.9********986 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.1e-05      0.05      35      96 ..     251     316 ..     209     329 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
                 ESEEEET.TTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHH.HCEEEEEEEEECSC.TSSEEE CS
  ADH_zinc_N  35 adeviny.kea.dlverikeltggegvdvvfecvGsgatleaal.kllkpgGrlvvvGg.gkgeee 96 
                 ad v ++  ++  +v++++   +  g+d+v+++v++   +++ l +l++p+Gr+ +v+g ++++++
  KIR64366.1 251 ADLVCTTgGTMhGPVDHLHPTLEALGADYVVNTVAVRPGFPMLLaRLVDPDGRVRFVAGlPGNPQS 316
                 7777777656667899999989999*****************874799***********7666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3055.39
//
Query:       KIR64367.1  [L=163]
Description: molybdenum cofactor biosynthesis protein MoaC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-47  160.7   1.0    2.3e-47  160.5   1.0    1.0  1  MoaC      MoaC family


Domain annotation for each model (and alignments):
>> MoaC  MoaC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.5   1.0   1.3e-51   2.3e-47       1     136 []      18     151 ..      18     151 .. 0.99

  Alignments for each domain:
  == domain 1  score: 160.5 bits;  conditional E-value: 1.3e-51
                 E---TTS--EEEEEEEEEEEEE-HHHHHHHHTTSSTTB-HHHHHHHHHHHHHHHHHHHSTT-----EEEEEEEEEEETTTTEEEEEEEEEEEESS--HH CS
        MoaC   1 mvdvsekeetkrtAvAegrvklseetlelikekklkkGdvlavariagimaaKktseliplcHplpltkveveleleeeeesveieatvktegktGvem 99 
                 mvdvs+k+++ r AvA+gr+++++e+++l++++ l+kGd+lav r+agim+aK+t++liplcHp++l+ v+v+l l+  +++vei+at++t+++tGvem
  KIR64367.1  18 MVDVSAKAVSGRLAVAAGRLRTTAEVVDLLRRDGLPKGDALAVGRLAGIMGAKRTPDLIPLCHPIALHGVTVDLALT--DDTVEITATARTADRTGVEM 114
                 9*************************************************************************987..79****************** PP

                 HHHHHHHHHHHHHHHHHTTTHTT-EEEEEEEEEEESS CS
        MoaC 100 EALtavsvaaltvyDmvKavdkemvieevrlveKsgG 136
                 EALtav+va l++ DmvKavd ++ ++ vr+++K+gG
  KIR64367.1 115 EALTAVAVAGLALVDMVKAVDPAASVDAVRVLRKEGG 151
                 ************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1216.97
//
Query:       KIR64368.1  [L=840]
Description: diguanylate cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-70  235.7   0.0    8.7e-70  234.9   0.0    1.4  1  EAL       EAL domain
    1.8e-41  141.5   0.0    4.9e-41  140.2   0.0    1.7  1  GGDEF     Diguanylate cyclase, GGDEF domain
  ------ inclusion threshold ------
          3    7.6   7.5        5.8    6.7   7.5    1.4  1  Bax1-I    Inhibitor of apoptosis-promoting Bax1


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.9   0.0   1.4e-73   8.7e-70       3     238 .]     553     786 ..     552     786 .. 0.97

  Alignments for each domain:
  == domain 1  score: 234.9 bits;  conditional E-value: 1.4e-73
                 HHHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHH.CHTT--EEEEEE--CHHCC-C CS
         EAL   3 alrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrla.eqldadiklsinlspaslade 100
                 +l +a++++e+ + +QP+vdl tg+v+ +eal+rw+hp +g+i p +fl+++er+gll+++++++l+qal  + +++      d+++++n+sp+sl d 
  KIR64368.1 553 ELPRAVADQEFTVNFQPIVDLGTGEVTSAEALARWHHPVHGIIDPLRFLEAVERSGLLPAFAEAILDQALIAANSWRdA--GFDLPVAVNVSPRSLLDA 649
                 6899************************************************************************833..456777************ PP

                 CHHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHH CS
         EAL 101 efleelrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalia 199
                  f+  ++++l+++ ++p+rLvle+te+  l++l+ +  +vl rLr+ G+r+alddfgtgyssls+l+r+p+  +K+drs+++ +e ++ea+a++++ ++
  KIR64368.1 650 RFPGSVLARLRAHDLPPDRLVLELTETLTLSQLDVVD-RVLSRLRDEGVRLALDDFGTGYSSLSLLSRIPVHELKIDRSFVSAMEGSAEAAAVIRSTLD 747
                 ***************************8889999999.************************************************************* PP

                 HHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 200 lakelgikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 l ++lg++vvaegVe+e q +al+elgc+ +QG+l+++p
  KIR64368.1 748 LGRSLGLTVVAEGVESEPQRRALWELGCTAGQGHLFGRP 786
                 *************************************99 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.2   0.0   8.1e-45   4.9e-41       1     159 [.     378     531 ..     378     532 .. 0.95

  Alignments for each domain:
  == domain 1  score: 140.2 bits;  conditional E-value: 8.1e-45
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 a+hD+lTgL+NRr+l ++ +++l+  +  +  +a++l+dl++Fk++ndt+Gh++GD+vL +va+rL+ +++ +dlv RlggdeFa+ll   +    a +
  KIR64368.1 378 ATHDTLTGLANRRHLLDQGSEQLNARHA-DGVTALVLIDLNHFKEVNDTLGHAAGDQVLLQVADRLRGAAQGDDLVSRLGGDEFAVLLRGLPAP--AVA 473
                 68********************999866.8999***********************************************************77..9** PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTS CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagr 159
                 a r ++lla+l+ep++++g  + v++s Gia+ap      + ell++Ad a+y+aK+ag+
  KIR64368.1 474 AHRTEALLAALHEPLDVDGMRISVEASGGIAIAP--ASGGMPELLRRADVAMYQAKRAGQ 531
                 *********************************7..4445579***************97 PP

>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   7.5   0.00098       5.8      13     101 ..      19     105 ..      17     174 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00098
      Bax1-I  13 lgllltalvaavvlsspaqlflslhivlflvvilaplalv.flslsaarlkkkssalalallllftlleGlslspillvytgaiilqafl 101
                 +gl++ ++ aa+v+s+++ l  +    l l++ l++l+++ + + + +r++  ++    +++   ++l+Gl ++p+ +v+ ++++  a+ 
  KIR64368.1  19 VGLVVVCASAALVVSTDQLLAGNDPGNLALWAALVSLVAIgVTVKVRVRIRATNH---DIAWTETAILIGLAVAPTPMVVLATSLGIAIT 105
                 7999*************87777777778888888888888665555555555444...5999999**********999999666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 6284.41
//
Query:       KIR64369.1  [L=442]
Description: hypothetical protein TK50_01355 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-16   59.0  48.4    5.4e-16   59.0  48.4    3.7  4  GT87      Glycosyltransferase family 87


Domain annotation for each model (and alignments):
>> GT87  Glycosyltransferase family 87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   4.2     0.025   4.4e+02      49      94 ..      26      78 ..       8      82 .. 0.51
   2 !    2.6   3.1    0.0051        91      12      49 ..      82     122 ..      80     132 .. 0.60
   3 !   59.0  48.4     3e-20   5.4e-16       2     237 ..     161     410 ..     160     412 .. 0.75
   4 ?    0.1   2.3      0.03   5.3e+02       3      29 ..     402     431 ..     401     436 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.025
        GT87 49 l.......asavalalllaalalepvlstlgfGqinllllllvlldllllrrr 94
                +       asa+  a+++ + +l+p + +  ++ +  ll++l++++ l+ rrr
  KIR64369.1 26 AldlglygASAAFAAVTAGTSTLPPHRAWGTVAAFGYLLAALAVAGQLAARRR 78
                14444454444444444455555555555555555555555555555554433 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.0051
        GT87  12 aplallp..yglalalwallnlaallla.lrlllrrlgral 49 
                 +pla+lp  +++ +++wa ++l+ ll+  +++++ r++ra+
  KIR64369.1  82 TPLAALParWAVTGLAWASTTLLPLLVQsAQRAAGRTDRAQ 122
                 7******6666666666666655555443555555554443 PP

  == domain 3  score: 59.0 bits;  conditional E-value: 3e-20
        GT87   2 t.YPPfaallfaplallp.yglalalwallnlaalllalrlllrrlgral..............asavalalllaalalepv.lstlgfGqinllllll 83 
                 t Y P++al+ +p+a+ + +++ +++w ++ +a+ll+++  +lr  + a               ++a+a++  + a+++ pv   tl++G  +l +l++
  KIR64369.1 161 TpYQPGMALFGLPRAVADgWWTDARVWFAVATALLLALAVAALRTGAPATlgasaaagdpagdgDRAAAVLRGIQAATVLPVcALTLATGGDDLPVLAA 259
                 55*****************88888888888888888888888787444448*************7777777788999999999**************** PP

        GT87  84 vlldllllrrrrpllaGlliGlaaaiKlt..Palfll..ylllrrrwralaaaaatalvltalpllllppssleyfle.tlfdtseriaedvgnqslls 177
                 +ll+l+l  ++rp  aGl+iG+a a+Kl+  P++++l  + +  r   +laa+a+++ +l++lp+ll+    +++ +e +l  + ++ + +   qs   
  KIR64369.1 260 CLLALALAASGRPGRAGLAIGVAGALKLFawPVALVLiaWAATHRCAGRLAAGALGVPALALLPALLVD---RDALVEnVLRFPLGHGLVTSPAQS--P 353
                 *****************************6644444421333344444444448888888888888888...888888677777664444445555..6 PP

        GT87 178 lagllaralalglsavtllwlvlvllvvalaavaawrlrrrerllalaaallval.l..alLv 237
                  +g+l   +   +       +v+++l+va++a++a+rl+ r + +a aaal+++  l  a+L+
  KIR64369.1 354 FPGHLIATALPAG------RVVAAALLVAAGAAIAVRLLHRPPRTAAAAALICGYgLlaAILL 410
                 7777777333333......36667777999999999999777777777777777634455555 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.03
        GT87   3 YPPfaallfaplallp...yglalalwall 29 
                 Y  +aa+l++p + +    y++al++wa++
  KIR64369.1 402 YGLLAAILLMPTTRFGyllYPVALLAWAAA 431
                 788888999888755555588888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3270.01
//
Query:       KIR64370.1  [L=211]
Description: phosphoribosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-21   77.0   0.1    1.4e-21   76.6   0.1    1.2  1  Pribosyltran     Phosphoribosyl transferase domain
    3.3e-05   23.4   0.3      6e-05   22.6   0.0    1.5  2  UPRTase          Uracil phosphoribosyltransferase
     0.0067   16.5   1.0      0.013   15.5   1.0    1.5  1  Unstab_antitox   Putative addiction module component
  ------ inclusion threshold ------
      0.015   15.3   0.5      0.031   14.3   0.5    1.5  1  ADH_zinc_N       Zinc-binding dehydrogenase
      0.036   13.8   0.2      0.061   13.1   0.2    1.3  1  Haem_oxygenas_2  Iron-containing redox enzyme
      0.037   12.8   0.2      0.051   12.3   0.2    1.2  1  Oxidored_nitro   Nitrogenase component 1 type Oxidoreductase
       0.25   11.5   3.0       0.17   12.0   1.0    1.7  2  AAA_33           AAA domain


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.1   5.6e-25   1.4e-21      14     158 ..      10     195 ..       1     196 [. 0.94

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 5.6e-25
                   EEEETTEEEEEE.--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE...................................... CS
  Pribosyltran  14 avarlaaeilee.yngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdes.............................. 79 
                   ++ r +a++l    +++ ++v+g  rgGvp+a  +a +L+vpl+++ ++k   + ++e+a g+  ++                              
    KIR64370.1  10 DAGRVLADRLAGlVGHSDVTVLGLVRGGVPVARVVAERLGVPLDVLVVRKLGLPLAPEVAFGALGPNgvrvlnetvaarldagevadvqrreqaele 106
                   55666666666669999**********************************************9999****************************** PP

                   .........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEEEEEEEEE-HHHHHHHHHH-TTS......EEEEEEE-SEE-T CS
  Pribosyltran  80 .........rlledpagkkVliVDDildtGgTllaalelLkekgpeevriavlvdkpateeevdknakrvfsls.pdnfvavvgfelds 158
                            r++ d+ g++ ++VDD+l+tG T +aa++  +  g+ +v +av+v   + +e   ++a++v++ + p +f av  ++ d+
    KIR64370.1 107 rreqryragRPPLDLTGRTAVVVDDGLATGATARAAVQVARHLGARRVVVAVPVGSQQAYEMLAAEADEVVCAErPADFGAVGAYYFDF 195
                   *********************************************************************************99999887 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.93   2.4e+03      67      87 ..      26      46 ..      14      63 .. 0.76
   2 !   22.6   0.0   2.3e-08     6e-05     114     176 ..     116     176 ..      77     180 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.93
     UPRTase 67 ekialVpilRaGegmeealre 87
                +++++  ++R+G + ++ + e
  KIR64370.1 26 SDVTVLGLVRGGVPVARVVAE 46
                467777888888887776655 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 2.3e-08
     UPRTase 114 kLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlaeefpkv 176
                 + P +++ rt++++D  +aTG++a aa+q+ +    g ++++v+  + s+++ + la+e  +v
  KIR64370.1 116 RPPLDLTGRTAVVVDDGLATGATARAAVQVARH--LGARRVVVAVPVGSQQAYEMLAAEADEV 176
                 557788999*********************999..5568****************99998876 PP

>> Unstab_antitox  Putative addiction module component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.0   5.3e-06     0.013      17      45 ..      88     116 ..      83     119 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.3e-06
  Unstab_antitox  17 SLdeeadpelpaawkaElerRlaeyeaGk 45 
                      Ld+ ++ ++++  +aElerR+++y+aG+
      KIR64370.1  88 RLDAGEVADVQRREQAELERREQRYRAGR 116
                     588888899******************97 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.5   1.2e-05     0.031       5      46 ..     141     185 ..     137     194 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHTT-.EEEE.EESSHHHHHHHHHTTESEEEETTTC.HH CS
  ADH_zinc_N   5 aavqlAkalGa.evia.vdsseeklelakklGadevinykea.dl 46 
                 aavq+A++lGa +v++ v + ++++  +    adev+ +++  d+
  KIR64370.1 141 AAVQVARHLGArRVVVaVPVGSQQAYEMLAAEADEVVCAERPaDF 185
                 79**********888825555555566666789999988665565 PP

>> Haem_oxygenas_2  Iron-containing redox enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   2.4e-05     0.061      76     142 ..     137     202 ..     125     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.4e-05
  Haem_oxygenas_2  76 petlalinlfeavalsrrllgallGallalEllvsletlklaeelrelgldeeapeyfdlHvtiDna 142
                      ++++a+++++++++++r  ++  +G   a+E+l+  e++ ++ + r  ++ + + +yfd H   D++
       KIR64370.1 137 ATARAAVQVARHLGARRVVVAVPVGSQQAYEMLA-AEADEVVCAERPADFGAVGAYYFDFHEVSDDE 202
                      56788899999999999998777***********.888888888888***************99985 PP

>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2     2e-05     0.051     228     321 ..      74     176 ..      56     194 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2e-05
                     SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH.....HHHTT-EEEEECSS....HHHHHHHHHHHHHT-EEEEEEESSS-HHHHHH CS
  Oxidored_nitro 228 Gleatdaflrelakllgkevaperiaeerarlldaladyh.....eylagkrvaiygdp....drvvalarllkelGmevvaagtetahrddeer 313
                     G +++  + +++a+ l++ ++ ++ ++e+a+l+++ + y+       l g++++++ d+     ++ a +++ + lG++ v+++++ ++++ +e 
      KIR64370.1  74 GPNGVRVLNETVAARLDAGEVADVQRREQAELERREQRYRagrppLDLTGRTAVVVDDGlatgATARAAVQVARHLGARRVVVAVPVGSQQAYEM 168
                     66667777789999999999899999999***9999999966665578899999987763222667778888999******************98 PP

                     HHHHS.TT CS
  Oxidored_nitro 314 lkaeleeg 321
                     l ae++e 
      KIR64370.1 169 LAAEADEV 176
                     88865553 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.4   1.1e+04      90     104 ..      43      57 ..      41      58 .. 0.77
   2 ?   12.0   1.0   6.7e-05      0.17      61     117 ..     115     171 ..      70     184 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.4
      AAA_33  90 klarrlgvpvrivvv 104
                  +a+rlgvp  ++vv
  KIR64370.1  43 VVAERLGVPLDVLVV 57 
                 579999999888776 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 6.7e-05
      AAA_33  61 elarkalsagrnvildatnlsrrerarflklarrlgvpvrivvvetdeetlkeRlak 117
                 ++    l+ + +v++d ++++ ++ ++ +++ar+lg+++ +v+v +  +++ e la+
  KIR64370.1 115 GRPPLDLTGRTAVVVDDGLATGATARAAVQVARHLGARRVVVAVPVGSQQAYEMLAA 171
                 444455777889**************************8888887776666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1362.94
//
Query:       KIR64371.1  [L=131]
Description: hypothetical protein TK50_01365 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-18   64.7   1.0    4.3e-18   64.4   1.0    1.2  1  zf-TFIIB        Transcription factor zinc-finger
     0.0064   14.6   7.8     0.0074   14.4   7.8    1.0  1  Totivirus_coat  Totivirus coat protein
  ------ inclusion threshold ------
      0.016   15.7   0.1      0.023   15.2   0.1    1.3  1  Cytochrom_c3_2  Cytochrome c3
       0.05   13.6   1.3      0.088   12.8   1.3    1.3  1  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
      0.084   13.3   0.9       0.15   12.4   0.9    1.4  1  DnaJ_CXXCXGXG   DnaJ central domain


Domain annotation for each model (and alignments):
>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   1.0   1.2e-21   4.3e-18       2      40 ..       5      43 ..       4      44 .. 0.96

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 1.2e-21
    zf-TFIIB  2 CPkCqdeleeserggveidyCpqCrGvWldrgeleklle 40
                CPkC+ +++++er+gv id+C +CrG++ldrgelekl e
  KIR64371.1  5 CPKCHGDMRQYERSGVVIDQCGECRGIFLDRGELEKLFE 43
                ************************************987 PP

>> Totivirus_coat  Totivirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   7.8   2.1e-06    0.0074     659     737 ..      32     109 ..      23     120 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.1e-06
  Totivirus_coat 659 vsergaeqvsaeaetakpervargdpvrltahhaalrapqlpraggasdGgggvppppalgaaagdapsppssgsslaa 737
                       +rg  +   eae+ ++ +++ g+p+++ ++ a+   p++p  + ++ G g+vpppp+++++ g +p+ p+ g+  ++
      KIR64371.1  32 FLDRGELEKLFEAEANWNRQQSAGAPNQARPAQAPGAYPPPPP-PAPQPGYGAVPPPPPPPPTHGYPPPAPAYGGHAQP 109
                     556777788899****************999988877777665.77888999***********9999999988887766 PP

>> Cytochrom_c3_2  Cytochrome c3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   6.3e-06     0.023       6      38 ..       2      34 ..       1      61 [. 0.75

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.3e-06
                    T.TGGGTSSSST-SSTTHHHHHHHHHHH--HHH CS
  Cytochrom_c3_2  6 gvkCadCHtkekpkkdkaveeekClsCHgklee 38
                    +++C +CH++ ++ +++ v  ++C +C g   +
      KIR64371.1  2 QLTCPKCHGDMRQYERSGVVIDQCGECRGIFLD 34
                    789*********99*************985544 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.3   2.5e-05     0.088      20      44 ..       4      29 ..       2      30 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.5e-05
  Zn_Tnp_IS1595 20 vCPhCgsr.kayriktrglfqCkeCr 44
                   +CP+C+++ + y+ ++    qC eCr
     KIR64371.1  4 TCPKCHGDmRQYERSGVVIDQCGECR 29
                   8************************8 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.9   4.3e-05      0.15      43      65 ..       4      30 ..       1      37 [. 0.57

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.3e-05
  DnaJ_CXXCXGXG 43 tCpeCeGtGkvikek....dkCkkCkG 65
                   tCp+C+G  + ++++    d+C +C+G
     KIR64371.1  4 TCPKCHGDMRQYERSgvviDQCGECRG 30
                   566666655555444333235666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1027.47
//
Query:       KIR64372.1  [L=239]
Description: hypothetical protein TK50_01370 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-14   54.0  20.9    2.8e-14   54.0  20.9    2.2  2  MDMPI_N   Mycothiol maleylpyruvate isomerase N-terminal domai


Domain annotation for each model (and alignments):
>> MDMPI_N  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0  20.9   1.6e-18   2.8e-14       1     140 [.      10     169 ..      10     170 .. 0.76
   2 ?   -2.6   0.1      0.44   7.9e+03       7      21 ..     187     201 ..     183     228 .. 0.69

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 1.6e-18
     MDMPI_N   1 lreewaalaalvagLtdeqwaapspcpGWtvadlvaHlarsaralaaalaaegaesalardaaaalvtaad........................aeav 75 
                 l+++ a ++++va L+d+ +++p++c GW vadl+ H+   a++++ ala +++++a+ +d + +++++ +                          ++
  KIR64372.1  10 LAQAYAGITDVVAPLDDAGLQRPTRCRGWLVADLLFHVLCDAQRALVALASPADGPADCDD-VSYWRAFTApadgtgtgrraardeagsggrhasWVRR 107
                 57788899*****************************777777777775555555554444.3334444445666666666666677777766445555 PP

     MDMPI_N  76 dlaaslapeallaafraavtrlaaalaalppdaiadrlgipggprslgeflrtrlvEavvHglDl 140
                  +aa   p  ++  ++++++++ +a aa++p+  + + g  + +++    l+t + EavvH+lDl
  KIR64372.1 108 SAAAFERPSGVVRVWADTAPAAVRAAAAADPAGFVTTQGHVLRVPD---LLATLTTEAVVHHLDL 169
                 5666678889999999999999999999999999999977777777...***************8 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.44
     MDMPI_N   7 alaalvagLtdeqwa 21 
                 a+a l++ L+d++++
  KIR64372.1 187 AVASLCGLLSDDAVR 201
                 566667777766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1621.95
//
Query:       KIR64373.1  [L=739]
Description: DNA helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-98  329.6   1.4    5.6e-87  291.3   0.3    2.2  2  DnaB_C       DnaB-like helicase C terminal domain
    2.2e-33  114.4   0.0    1.1e-32  112.2   0.0    2.1  2  DnaB         DnaB-like helicase N terminal domain
      3e-09   36.7   0.5    1.6e-06   27.8   0.1    2.6  2  AAA_25       AAA domain
     0.0011   19.2   0.0     0.0025   18.1   0.0    1.6  1  LAGLIDADG_3  LAGLIDADG-like domain
     0.0045   16.4   0.3      0.075   12.4   0.0    2.2  2  ATPase       KaiC
  ------ inclusion threshold ------
      0.017   14.8   0.1       0.11   12.2   0.0    2.5  2  Tudor_2      Jumonji domain-containing protein 2A Tudor domai
       0.23   11.0   0.0       0.41   10.1   0.0    1.3  1  PSY3         Shu complex component Psy3, DNA-binding descript


Domain annotation for each model (and alignments):
>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   7.1e-13   1.8e-09       1      33 [.     210     242 ..     210     248 .. 0.94
   2 !  291.3   0.3   2.2e-90   5.6e-87      24     254 ..     502     734 ..     492     735 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 7.1e-13
                 SBXSSTHHHHHHCTSBXTTXEEEEEEXTTSSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C   1 GlstgfkdLDkltsGlqkgdliiiAarpsmGkt 33 
                 G++tgf+dLD+l++Gl++g+lii+A+rp+ Gk 
  KIR64373.1 210 GVPTGFTDLDRLLNGLHPGQLIIVAGRPGLGKA 242
                 9*******************************6 PP

  == domain 2  score: 291.3 bits;  conditional E-value: 2.2e-90
                 EEEXTTSS..HHHHHHHHHHHHHHCSTSEEEEEESSSXHHHHHHHHHHHHHTXXHHHHHHTTSXHHHHHHHHHHHHHHHHSEEEEEEXSSXCHHHHHHH CS
                 xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  24 iAarpsmG..ktalalniaenaavkeklpvavfslemsaeqlvqRllsseaeidskklrtgklkeedweklteaieelseaklfiddtpaltvseirsk 120
                 +A+r+ +    ++  +++a+naa+++++  a+fslems+ ++v+Rlls+ea+++++ lr+g+l+++dw+kl++ ++e+sea+lf+ddtp+++++eir+k
  KIR64373.1 502 LAGRSMIPthNSTASMDFARNAAIRANQASAIFSLEMSKVEIVMRLLSAEARVPLHVLRSGQLSDDDWTKLARCMGEISEAPLFVDDTPSMNLMEIRAK 600
                 566654321145678999********************************************************************************* PP

                 HHHHHHHTTEEEEEEEEGGGTBTSCSSSCCCHHHHHHHHHHHHHHHHCTSXEEEEEEXSGGGCCSCCHSXXHHHHCCTTSCCCCXSEEEEEEECCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 121 arrlkkekglgliviDyLqlmegseekenreqevseisrsLkalakelnvpvialsqLsravesredkrPvlsDLreSgsieqdADvvlflyrdeyyke 219
                 arrlk++++l+liv+DyLqlm++++++e+r+qev+++sr+Lk lake+++pvia+sqL+r  e+r+dkrP+lsDLreSgsieqdADvv++l+rd+yy++
  KIR64373.1 601 ARRLKQKHDLKLIVVDYLQLMTSPKRTESRQQEVADLSRGLKLLAKEVECPVIAVSQLNRGPEQRTDKRPQLSDLRESGSIEQDADVVILLHRDDYYDK 699
                 **********************988799**********************************************************************9 PP

                 HHCHHCEEEEEEEEETTSXXEEEEEEEETTTTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 220 dseekgkaeiiiaKhRnGptgtvklafekeytrFe 254
                 +s++ g+a++i+aKhRnGpt+++++a + +++rF 
  KIR64373.1 700 ESPRAGEADFIVAKHRNGPTDSITVAAQLHLSRFV 734
                 99999****************************96 PP

>> DnaB  DnaB-like helicase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   0.0   4.1e-36   1.1e-32       2     102 ..      31     131 ..      30     132 .. 0.98
   2 ?   -1.5   0.0       1.1   2.7e+03      24      54 ..     698     716 ..     685     732 .. 0.56

  Alignments for each domain:
  == domain 1  score: 112.2 bits;  conditional E-value: 4.1e-36
                 HHHHHHHHHHHHHHHHHSTTHHHHHHCC--GGGSSSHHHHHHHHHHHHHHHTTTS-SHHHHHHHSCSSS-GGHGT.HHHHHHHHHC-S-CCCHHHHHHH CS
        DnaB   2 ppqsieaEqavLgalLldpeaidevadilkpedFyepahrliFeailelyekgepiDlvtvkeelekkgkledvggaaylaelvaavpsaanieeyaei 100
                 ppq++ aEq+vLg++Ll+++ai +v +ilk+ dFy+p h++iF+ail++y +gep+D++tv+++l ++g+l ++gga yl++l+a vp+aan+ +ya+i
  KIR64373.1  31 PPQDVAAEQCVLGGMLLSKDAIADVVEILKSTDFYRPVHATIFDAILDIYGRGEPADAITVAAALADSGDLARIGGAPYLHTLIATVPTAANAAYYARI 129
                 8************************************************************************************************** PP

                 HH CS
        DnaB 101 vk 102
                 v 
  KIR64373.1 130 VG 131
                 96 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
                 HHHHCC--GGGSSSHHHHHHHHHHHHHHHTT CS
        DnaB  24 devadilkpedFyepahrliFeailelyekg 54 
                 d+ +    + dF  ++hr            +
  KIR64373.1 698 DKESPRAGEADFIVAKHR------------N 716
                 444444555555555554............4 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0023       5.9      20      50 ..     216     244 ..     204     315 .. 0.87
   2 !   27.8   0.1   6.2e-10   1.6e-06      76     191 ..     533     660 ..     521     663 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0023
      AAA_25  20 pprrwlvkgllpagelallaGapgtGKttla 50 
                 + ++ l+ gl p g l+++aG+pg GK   a
  KIR64373.1 216 TDLDRLLNGLHP-GQLIIVAGRPGLGKAL-A 244
                 567789999965.**************54.4 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 6.2e-10
      AAA_25  76 yvsaEdsedelrrRlravgeal..........rddarllvldlagv.eslpLfakdrggtlltadvdaleaaieevegvrlvviDplsralgg..dens 161
                 + s+E+s  e+  Rl  + + +          +dd++  +  ++g+  + pLf +d+ +  l  +++a ++++++ ++++l+v+D l+ +++    e +
  KIR64373.1 533 IFSLEMSKVEIVMRLLSAEARVplhvlrsgqlSDDDWTKLARCMGEiSEAPLFVDDTPSMNLM-EIRAKARRLKQKHDLKLIVVDYLQLMTSPkrTESR 630
                 6789999999999999999888999999999999*******************9988887776.58999**********************99877777 PP

      AAA_25 162 nsdvgalvealeriarrtgaavllvhHvgK 191
                 + +v+ l   l+ +a++  + v++v ++++
  KIR64373.1 631 QQEVADLSRGLKLLAKEVECPVIAVSQLNR 660
                 7889*********************98876 PP

>> LAGLIDADG_3  LAGLIDADG-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   9.8e-07    0.0025       2      65 ..     383     443 ..     382     459 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 9.8e-07
                  HHHHHHHHHHHHCCECCECSTTTTSEEEEES-HHHHHHHHHHHHHCT.HSCEEEE.EEE-SCCCC CS
  LAGLIDADG_3   2 vkaafLrGlfdaDGsvskskkkgvsisltssskelledvqrlLlrlGIestiyek.kkakgrgvy 65 
                  + +++L+Gl da G+v+ +++    +++ s+s++l+  v++l   lG   ti e   +++ +  y
   KIR64373.1 383 QRRELLAGLMDAAGTVRPDGT----LRYVSTSRRLAGCVRELVVGLGYQCTIDEQpAREGSPAAY 443
                  7899****************7....9****************************96666555555 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.9e-05     0.075       1      34 [.     211     243 ..     211     246 .. 0.95
   2 ?    1.7   0.1     0.052   1.3e+02      99     176 ..     589     672 ..     512     689 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.9e-05
      ATPase   1 vktgIeglDeilkgGipegrvvlitGepGtGKti 34 
                 v+tg   lD++l +G+  g+ + ++G pG GK +
  KIR64373.1 211 VPTGFTDLDRLL-NGLHPGQLIIVAGRPGLGKAL 243
                 79*********9.9******************87 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.052
      ATPase  99 kdkedleelieelaeaikeikakrvviDsitglayeekeavaReilrqlvr...vl.kklgvTailvsekss..seeaaggygv 176
                 + +++l+e+ ++ ++  ++   k +v+D ++ ++  ++++   +++  l r    l k+ ++  i vs+ +   ++++ +++++
  KIR64373.1 589 TPSMNLMEIRAKARRLKQKHDLKLIVVDYLQLMTSPKRTESRQQEVADLSRglkLLaKEVECPVIAVSQLNRgpEQRTDKRPQL 672
                 567778888888888888888899999999988444444444456666655111445788899999998877555555555555 PP

>> Tudor_2  Jumonji domain-containing protein 2A Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.4e-05      0.11      21      35 .]     284     298 ..     278     298 .. 0.85
   2 ?   -1.8   0.0         1   2.7e+03       3      11 ..     709     717 ..     708     717 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.4e-05
     Tudor_2  21 vssqtfYeVeFEDgS 35 
                  +++ +YeVeF+DgS
  KIR64373.1 284 RHDRPCYEVEFSDGS 298
                 57799*********9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1
     Tudor_2   3 dVivrwtDg 11 
                 ++++++++g
  KIR64373.1 709 FIVAKHRNG 717
                 689*****8 PP

>> PSY3  Shu complex component Psy3, DNA-binding description
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00016      0.41     113     173 ..     588     656 ..     584     683 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00016
        PSY3 113 dspleALkrcqq.edsldk..qLsgilidNlSylssepks.....klklLlkllkklrktfgcwvitts 173
                 d+p+  L++ ++   +l++   L+ i++d l  ++s +       +++ L++ lk+l+k+  c vi +s
  KIR64373.1 588 DTPSMNLMEIRAkARRLKQkhDLKLIVVDYLQLMTSPKRTesrqqEVADLSRGLKLLAKEVECPVIAVS 656
                 5677777755542223333459*********977444433456669********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 4966.03
//
Query:       KIR64374.1  [L=148]
Description: 50S ribosomal protein L9 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-26   93.1   0.0    1.6e-26   92.6   0.0    1.3  1  Ribosomal_L9_C  Ribosomal protein L9, C-terminal domain
    9.9e-22   76.2   0.1    2.8e-21   74.8   0.1    1.7  2  Ribosomal_L9_N  Ribosomal protein L9, N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L9_C  Ribosomal protein L9, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.0   1.8e-30   1.6e-26       2      85 ..      64     146 ..      63     147 .. 0.97

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 1.8e-30
                     HHHHHHHHHSS..-EEEE--B-TT-BBSS---HHHHHHHHHHHT-----GGGEE-TTT-SBSSEEEEEEESSSS-EEEEEEEEE CS
  Ribosomal_L9_C   2 eaealaekLeakvkvtikakagedgklFGsVtakdIaealkkklgieidkkkieleepiktlGeyevtvkLhkevtakikveVv 85 
                     +a++++++Le ++kv +ka+ag++g+lFGsVt+++I++a+k++ g  +d++++e + +ik+lG y v+++Lh+evtak++++Vv
      KIR64374.1  64 HANEVKAQLE-GLKVSLKARAGDGGRLFGSVTPAEIVDAVKAAGGPALDRRRLETPGHIKSLGAYPVSIRLHPEVTAKFDLNVV 146
                     69********.7888********************************************************************8 PP

>> Ribosomal_L9_N  Ribosomal protein L9, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.1   3.2e-25   2.8e-21       1      46 [.       1      46 [.       1      47 [. 0.98
   2 ?   -1.9   0.0      0.27   2.5e+03       9      19 ..      59      69 ..      57      70 .. 0.81

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 3.2e-25
                    -EEEESSCBTTTBSSS-EEE--HHHHHHTTTTTTSEEE-SHHHHHH CS
  Ribosomal_L9_N  1 MkVILlkdVkglGkkGdvveVkdGyaRNyLipqglAvyAtpenlke 46
                    Mk+IL+++V+glG  Gd+veVk+Gy+RNyL+pqg+A+ +t+++ k+
      KIR64374.1  1 MKIILTQEVSGLGAPGDIVEVKNGYGRNYLLPQGFAIAWTKGAEKQ 46
                    9*****************************************9998 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.27
                    BTTTBSSS-EE CS
  Ribosomal_L9_N  9 VkglGkkGdvv 19
                    +  lG++++v+
      KIR64374.1 59 IRDLGHANEVK 69
                    67899999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1148.18
//
Query:       KIR64375.1  [L=79]
Description: 30S ribosomal protein S18 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-24   85.5   1.1    2.6e-24   85.2   1.1    1.2  1  Ribosomal_S18  Ribosomal protein S18
  ------ inclusion threshold ------
      0.016   15.3   0.1       0.02   15.0   0.1    1.1  1  Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX
      0.072   12.9   0.1        0.1   12.4   0.1    1.3  1  SpoVIF         Stage VI sporulation protein F
      0.099   13.1   0.0       0.11   12.9   0.0    1.1  1  EF-hand_7      EF-hand domain pair


Domain annotation for each model (and alignments):
>> Ribosomal_S18  Ribosomal protein S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   1.1   5.8e-28   2.6e-24       2      52 .]      22      72 ..      21      72 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 5.8e-28
  Ribosomal_S18  2 kekidYkdvelLsqFiterGkIlprriTGlcakhQrklakaIkrARhlaLL 52
                   +++idYkd+ lL++Fi++rGkI  rr+TG+++++Qr++a+a+k+AR++aLL
     KIR64375.1 22 ITYIDYKDTALLRKFISDRGKIRARRVTGVTSQQQRQIARAVKNAREMALL 72
                   689***********************************************8 PP

>> Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   4.5e-06      0.02      56      98 ..      31      75 ..      25      78 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.5e-06
  Peptidase_C92 56 tpLseflarrssiavyrlkea..ltaeqrqkaaeaalrrlgkpYd 98
                     L++f+++r++i  +r++     +++q+++a+++a+++   pY 
     KIR64375.1 31 ALLRKFISDRGKIRARRVTGVtsQQQRQIARAVKNAREMALLPYT 75
                   579***************99866678888999*****99999986 PP

>> SpoVIF  Stage VI sporulation protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.3e-05       0.1      21      63 ..      21      66 ..      10      70 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
      SpoVIF 21 svqkadlkdektlRqlikqvsklankpv...skekedkivkaivnd 63
                +++  d kd + lR++i++  k+  ++v   +++++ +i +a++n 
  KIR64375.1 21 GITYIDYKDTALLRKFISDRGKIRARRVtgvTSQQQRQIARAVKNA 66
                5778899******************9962226899999*9999986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.5e-05      0.11      11      36 ..      17      47 ..      11      68 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
   EF-hand_7 11 lDtdgdgyldkeellrllrkifqga......g 36
                lD+dg  y+d+ +   llrk+++        +
  KIR64375.1 17 LDKDGITYIDYKDTA-LLRKFISDRgkirarR 47
                8**************.****998666666652 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 634.06
//
Query:       KIR64376.1  [L=96]
Description: 30S ribosomal protein S6 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-28   97.4   0.0    4.8e-28   97.3   0.0    1.0  1  Ribosomal_S6  Ribosomal protein S6


Domain annotation for each model (and alignments):
>> Ribosomal_S6  Ribosomal protein S6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0   2.7e-32   4.8e-28       1      90 []       3      92 ..       3      92 .. 0.99

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 2.7e-32
                  EEEEEEEE-TTS-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEESCCHHHHHHHHHHCSTTEEEEEEEE CS
  Ribosomal_S6  1 kYElvfilrpelseeevkelvekvgklilenggvvrkveswGkrkLaypikkkteGyyvlmnfdaspevikelertlrldervlRylivk 90
                  +YE+++il+p+l+e +v+  ++++ ++i  +gg+v+k++ wG+r+Lay+i+kk eG+y +++ +a p++++el+r+lrl+e+vlR+ +++
    KIR64376.1  3 HYEIMVILDPSLEERTVAPSLDTYLNVIRTAGGSVEKTDVWGRRRLAYEINKKAEGIYAVVDLQATPAAVAELDRQLRLNESVLRTKVIR 92
                  7************************************************************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 835.56
//
Query:       KIR64377.1  [L=263]
Description: endonuclease IV [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-26   90.9   1.8      1e-25   90.4   1.8    1.2  1  AP_endonuc_2  Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
       0.16   11.9   0.0       0.36   10.8   0.0    1.5  1  RMMBL         Zn-dependent metallo-hydrolase RNA specificity 


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   1.8   1.1e-29     1e-25       9     210 .]      21     218 ..      14     218 .. 0.90

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 1.1e-29
                   -SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS.HHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCTTTSGHHH CS
  AP_endonuc_2   9 fdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederear.reesvdalkraielaaaLGapllvlhpGtagagpkgseee 104
                   +d+v++f++d++ +++    + re + +l+++ + + ++ ++  + + + +    r r  s++ l  ++ +aa++Ga+ l++h G  +  ++++ ++
    KIR64377.1  21 ADAVQFFLSDPQGWKA---PKPREDADRLRAAEVDLYVHAPYVINVATLNN----RiRIPSRKLLLGHATAAAEIGAKGLIVHGG--HVNAGDDLAV 108
                   69************96...699*************9999***999997765....345566**********************99..8999999999 PP

                   HHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC..HHHHHHHHHHTTTTEEEEEEHHHHHHHTTTHHHHHHHHHGG...EEEEEE.EESSTTT CS
  AP_endonuc_2 105 awerlaeslneladyaekegvklalEtlagsgvelgd..eelarlldavdspnvgvclDtgHlliaeedvddalraladr...ikhvHikDakgdlg 196
                    ++++++ +  +ad +      +++E++ag ++ + +  + larl da+++  vg+clDt+H+++ +e + d++++++     i +vH++ +k++ g
    KIR64377.1 109 GFDNWRKTFAYAADAG-GFALPVLIENTAGGDNACARrlDALARLWDALGDYEVGFCLDTCHAHAGGEELLDLVDRVKAItgrIDLVHANNSKDTFG 204
                   9999999999999997.577*************9999*****************************88888888888777777************** PP

                   TSSTTEESTTSSSS CS
  AP_endonuc_2 197 agrdrhvpigeGei 210
                   +grdrh +++ G+i
    KIR64377.1 205 SGRDRHDNLDGGTI 218
                   **********9987 PP

>> RMMBL  Zn-dependent metallo-hydrolase RNA specificity domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     4e-05      0.36      12      38 ..     166     195 ..     164     200 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4e-05
       RMMBL  12 d.fSgHadknellelirklkprn..vilvH 38 
                 d + +Ha+ +ell+l+ ++k     + lvH
  KIR64377.1 166 DtCHAHAGGEELLDLVDRVKAITgrIDLVH 195
                 6689***************99888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1790.79
//
Query:       KIR64378.1  [L=705]
Description: hypothetical protein TK50_01410 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.38
# Mc/sec: 5544.32
//
Query:       KIR64379.1  [L=504]
Description: GPI mannosyltransferase 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-11   42.0  38.3    8.4e-11   42.0  38.3    3.1  3  GT87            Glycosyltransferase family 87
     0.0067   16.3   3.1       0.42   10.4   1.2    2.3  2  Mannosyl_trans  Mannosyltransferase (PIG-M)
  ------ inclusion threshold ------
      0.062   12.2  25.4       0.03   13.2  22.3    2.1  2  DUF2142         Predicted membrane protein (DUF2142)
       0.17   11.4  10.7        2.6    7.6   0.0    3.2  3  MASE3           Membrane-associated sensor domain


Domain annotation for each model (and alignments):
>> GT87  Glycosyltransferase family 87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.063   2.8e+02      24      49 ..      52      77 ..      41      93 .. 0.77
   2 !   42.0  38.3   1.9e-14   8.4e-11      23     236 ..     154     371 ..     120     377 .. 0.68
   3 ?   -3.8   4.5       1.9   8.4e+03      19      50 ..     394     428 ..     379     455 .. 0.41

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.063
        GT87 24 alwallnlaalllalrlllrrlgral 49
                + w+++ ++++l++l+l+l++++ + 
  KIR64379.1 52 RFWTAARIVLALACLTLALHWVQKSP 77
                56888888888888888888876654 PP

  == domain 2  score: 42.0 bits;  conditional E-value: 1.9e-14
        GT87  23 lalwallnlaalllalrlllrrlgralasavalalllaalalepvlstlgfGqinllllllvlldllllrrrrpllaGlliGlaaaiKltPalfll.yl 120
                 + +++l  la++ +a+ l+lrr      +  + a+   ++al p l   ++ + +ll + l+++++l++ r+rp laG+l+Gla a K +P+++l  +l
  KIR64379.1 154 ANALVLSALAVATVAVILALRR------RRPWDAA---LFALAPALFLTATVNWDLLAVGLAAFGFLAWARSRPALAGVLLGLAGAAKMWPLFVLGpIL 243
                 3344444444444445555555......2334444...788899988889999**************************************99987533 PP

        GT87 121 ll...rrrwralaaaaatalvltal...pllllppssleyfle.tlfdtseri...........aedvgnqsllslagllaralalglsa.vtllwlvl 200
                 +l   + r ra ++a++talv+ ++   p+++  ++ ++ f+e   +++   i           ++   n+   + +g++    +l++   +tl wl  
  KIR64379.1 244 VLalrANRIRAGLTAVGTALVALVAvnlPAAVPYRDNWDRFFElNTTRP---IdwgtlwyigryLDGKVNT---GGPGSMGPFEWLNA-NiPTLNWLSY 335
                 3345577788888888888777777788999999*********444444...3334545553332222222...35555555555555.1599999999 PP

        GT87 201 vllvvalaavaawrlr..rrerllalaaallvallalL 236
                 +l+++a ++va+++lr  +r rl+ la+++++a+l  +
  KIR64379.1 336 ALFGLACLGVAVLALRapKRPRLAQLAFLVVAAFL--I 371
                 99996666666666664588888888877777774..3 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 1.9
        GT87  19 yglalalwallnlaalllalrlllrrlgral...a 50 
                  + a+++w ++ +  ++++   ll  ++++     
  KIR64379.1 394 KWGAFIAWQVAEIGYFAAFYGELLGSATSRPvfpE 428
                 44445555555555444443333333333333331 PP

>> Mannosyl_trans  Mannosyltransferase (PIG-M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0031        14      18      58 ..     209     250 ..     193     275 .. 0.69
   2 !   10.4   1.2   9.4e-05      0.42     159     206 ..     352     402 ..     326     422 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0031
  Mannosyl_trans  18 tlyllekrkiasaalvlGlavhlkiYPliyalalal.slskk 58 
                      +   ++++ a a+++lGla   k++Pl  + ++++  l+ +
      KIR64379.1 209 GFLAWARSRPALAGVLLGLAGAAKMWPLFVLGPILVlALRAN 250
                     555667889999***************988877765034333 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 9.4e-05
  Mannosyl_trans 159 f..rrnlafalfvqtfvfvtfnkvctsqYfvWylvlLplllskv.kllswk 206
                        r  la+  f++  +f  f kv   q+ +W l+l+ l  +k   +++w+
      KIR64379.1 352 ApkRPRLAQLAFLVVAAFLIFSKVWSQQFVLWLLPLVVLARPKWgAFIAWQ 402
                     34466789999************************9999887742455666 PP

>> DUF2142  Predicted membrane protein (DUF2142)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       1.2   5.5e+03     199     209 ..      59      69 ..      49      84 .. 0.53
   2 ?   13.2  22.3   6.7e-06      0.03     135     363 ..     163     373 ..     154     384 .. 0.71

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1.2
     DUF2142 199 iilllaallla 209
                 i+l la+l la
  KIR64379.1  59 IVLALACLTLA 69 
                 22222222222 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 6.7e-06
     DUF2142 135 allala.ikaapagrallvllallPmalflasslsaDgltialalllfalvlrlleskrlsrrlliilllaalllalsKppyvlLallillipaekfsr 232
                 a++++a i a++++r + ++l +l  alfl ++++ D l+ +la+  f +  r       sr   ++++++  l + +K  + l++l + l++a + +r
  KIR64379.1 163 AVATVAvILALRRRRPWDAALFALAPALFLTATVNWDLLAVGLAAFGFLAWAR-------SRP--ALAGVLLGLAGAAK-MWPLFVLGPILVLALRANR 251
                 333344155666666777777777779*******************9999999.......444..5789999999999*.8888888888888877775 PP

     DUF2142 233 krivsallllaliiiaialalrivqkipairgelssenvdvsaqlklllshplaivrvfirsvetnlsvfvgqf....igdlgwldvplPswlifawiv 327
                  r   a+l+++  ++++ +a+     +p    +           ++l    p+ + +  + +++ +l++ v+ +    +g + wl+ ++P+  ++ + +
  KIR64379.1 252 IR---AGLTAVGTALVALVAVNLPAAVPYRDNWD--------RFFELNTTRPIDWGT--LWYIGRYLDGKVNTGgpgsMGPFEWLNANIPTLNWLSYAL 337
                 45...88999999999988888887777777777........667777778888888..33444444444444444458999*************9999 PP

     DUF2142 328 llllllfaalvlgelrlkekllvllvvlaivilivl 363
                 + l++l +a+ + +  ++ +l+ l++++++ +li+ 
  KIR64379.1 338 FGLACLGVAVLALRAPKRPRLAQLAFLVVAAFLIFS 373
                 999988876665555535555555555555555554 PP

>> MASE3  Membrane-associated sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00058       2.6      72     102 ..      47      82 ..      40     105 .. 0.71
   2 ?    0.4   0.3      0.09     4e+02      88     182 ..     164     193 ..     123     214 .. 0.55
   3 ?    7.0   2.6    0.0009         4      63     132 ..     316     384 ..     314     450 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00058
       MASE3  72 anlatqlwiaaRllealslllavlllkrkv.....l 102
                 a+    +w aaR+++al++l+++l   +k+     +
  KIR64379.1  47 ADRESRFWTAARIVLALACLTLALHWVQKSpcqdgA 82 
                 667778**************9988777666666552 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.09
       MASE3  88 lslllavlllkrkvlrayavflvyalvtlllllsifypkifPalfiegsGlTpfkiisEyliilllllalllllrrrkkfekkvlrlllaalvll 182
                 +                                                                 ++ +++l  rr+++ +  l  l+ al+l+
  KIR64379.1 164 V-----------------------------------------------------------------ATVAVILALRRRRPWDAALFALAPALFLT 193
                 1.................................................................22222222333333333333333333333 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0009
       MASE3  63 gmpiftessanlatqlwiaaRllealslllavlllkrkvlrayavflvyalvtlllllsifypkifPalf 132
                 +m+ f+  +an +t  w+   l+  + l +avl l+  + r ++  l++++v+++l++s ++++ f  + 
  KIR64379.1 316 SMGPFEWLNANIPTLNWLSYALFGLACLGVAVLALRAPK-RPRLAQLAFLVVAAFLIFSKVWSQQFVLWL 384
                 5999********************999999999999886.555666666666666666666666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 3072.51
//
Query:       KIR64380.1  [L=965]
Description: glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-62  209.3   2.3    2.9e-62  209.3   0.5    1.8  2  Transgly        Transglycosylase
    1.8e-28   99.6   0.9    2.8e-28   99.0   0.9    1.2  1  Transpeptidase  Penicillin binding protein transpeptidase dom


Domain annotation for each model (and alignments):
>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.3   0.5   3.3e-66   2.9e-62       3     177 ..     262     441 ..     260     442 .. 0.93
   2 ?   -1.4   0.1      0.16   1.4e+03      13      34 ..     539     560 ..     529     563 .. 0.79

  Alignments for each domain:
  == domain 1  score: 209.3 bits;  conditional E-value: 3.3e-66
    Transgly   3 ellaeleeeenrelvkleeippalkkavvaiEDrrFyehkGvdlkgiarAvlknlksgkssqGgSTitqQlvknlfls.eertlerKlkeavlAlklek 100
                 ++la+l  +enr+lvk++eip+++++av a+EDr+Fy+h+Gvd+kgiarA+++nl sg+ +qG+STitqQ+++n++ + ++++++rK+kea+lA+kl++
  KIR64380.1 262 TVLAKL-GSENRQLVKITEIPEHVQHAVAAAEDRNFYRHSGVDYKGIARAAWNNL-SGGDKQGASTITQQYARNAYENlKDDSYARKVKEAILASKLND 358
                 678899.59**********************************************.78888**************9975679***************** PP

    Transgly 101 klsKdeILeaYlNsvylgrevyGieaAarayFgkdakdLtlaeaalLagllkaPs......rynplenpeeakkrrkvvlerm 177
                 k+sK eI+e+YlN++y+gr++yGieaAa++yFg+++k+Lt+a+aa+Lagl+k+P        y+p+ np +ak+r+ +vl+ m
  KIR64380.1 359 KYSKPEIMEHYLNVIYFGRGAYGIEAAAQTYFGVHTKQLTVAQAAVLAGLIKQPVasdthqGYDPAVNPVDAKSRWTYVLDGM 441
                 ******************************************************85555545677888************998 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.16
    Transgly  13 nrelvkleeippalkkavvaiE 34 
                  ++  +l++ p++l  avv+iE
  KIR64380.1 539 AKKNSELNDQPKNLMAAVVSIE 560
                 4556689999***********9 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.9   3.2e-32   2.8e-28       2     280 ..     555     834 ..     554     855 .. 0.85

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 3.2e-32
                     EEEEEETTT-BEEEEEEESE-TTTHHCCTCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS..ECTCCCC-..SSSS CS
  Transpeptidase   2 aavvldaktgevlamaskpsydpnakvgkneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqs.ikdweqdn..kgse 93 
                     a+v +++++g+vla+++  s     ++g +++ +n+ + +  +PGS fKv+t+aaa++ag i+ +++ d  ++k +g +s +++ ++d   ++ +
      KIR64380.1 555 AVVSIEPNSGRVLAYYGGDSGADFDYAG-KNTDKNGDLVGGHQPGSSFKVYTLAAAVNAG-ISVKSHWDATPFKPEGFDSpVQNANRDVsrTC-G 646
                     7999**************9877666666.7789999999*********************.888***********998888*****9999544.5 PP

                     EE.EHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--.B--SSHHHHHHHH..HTTT.SBB-HHHHHHHHHHHHTTTEEE CS
  Transpeptidase  94 gi.tlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaG.vptrkwlegatis..fgiG.ltvtplqlaqayaaiangGklv 183
                     +  tl+ + ++S n+ f+++++k+ ++ + +++k+ g+++ + +d p+      +++k l  + ++   g+G   vt l  a+ +a++an+Gk++
      KIR64380.1 647 KWcTLEFSTIQSYNVPFFHVTEKIKPSAVLDMAKQAGVSTIWTVDPPKAYDLnKNDPKDLAPSKFDrvIGYGqYPVTVLDHANGLATLANDGKYN 741
                     555*************************************99999999888734444554444444116777*********************** PP

                     --BSEEEEEECTT.....EEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCGTCTTS--EEEEEEEEECSSSTTSEEEEEEEEEEEEEES CS
  Transpeptidase 184 kPhlvkaivdpdg.....vrkvkpkelnklpisketaekvkeglkgvvsrgsgtataavegykvagKTGTAevagkkgngkkegakiswfvgyap 273
                     k h+v ++++++      +    +k + ++ i+++ a++v+  lk+    +   ++  + g + a+KTGT e  +  +        ++w+vgy+p
      KIR64380.1 742 KAHFVIKVEKQNVdtgkwEMVASEKLKPQQRIRADVAKEVTGVLKQIPGPN---NRSLDGGREAAAKTGTWEYDSRHNA-------HAWMVGYTP 826
                     **********9989999878888899999******************9999...34466699**********9984433.......47******* PP

                     T.TS-SEE CS
  Transpeptidase 274 a.dnpkya 280
                     +    +++
      KIR64380.1 827 QlATAVWV 834
                     85555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (965 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 6578.57
//
Query:       KIR64381.1  [L=157]
Description: hypothetical protein TK50_01440 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-65  217.7   0.1    4.2e-65  217.4   0.1    1.1  1  DUF5318        Family of unknown function (DUF5318)
  ------ inclusion threshold ------
       0.21   11.9   1.1       0.32   11.3   1.1    1.5  1  zf-LITAF-like  LITAF-like zinc ribbon domain


Domain annotation for each model (and alignments):
>> DUF5318  Family of unknown function (DUF5318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.4   0.1   4.7e-69   4.2e-65       1     125 [.       1     125 [.       1     131 [. 0.97

  Alignments for each domain:
  == domain 1  score: 217.4 bits;  conditional E-value: 4.7e-69
     DUF5318   1 vrtqrqvvdyalqrrallaevragrvgvaevcdaspyllraakfhGeptdvacPvcrkenltlvsyvyGdelkqaaGsartaeelerlaatleefsvyv 99 
                 +rtqrqvvdy+l++ra+l+e+ agrvg+++vcdaspyl++aa+fhGept+++cP+cr+enlt+v+y+yGdelkq+aG+art +el+ la+tl+ef+v+v
  KIR64381.1   1 MRTQRQVVDYSLRKRAVLRELLAGRVGTYDVCDASPYLKNAARFHGEPTEERCPICRSENLTHVHYIYGDELKQSAGQARTLAELPVLAMTLREFQVFV 99 
                 89************************************************************************************************* PP

     DUF5318 100 vevcrscswnhlvesyvlGkeeeake 125
                 vevc +c wnhlve+++lG+++ a  
  KIR64381.1 100 VEVCLGCGWNHLVEQFLLGRDGLAGG 125
                 ********************998765 PP

>> zf-LITAF-like  LITAF-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.1   3.6e-05      0.32       2      24 ..      47      69 ..      46     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.6e-05
  zf-LITAF-like  2 eptqvdCpaCqqrvvTsveyksg 24
                   ept+  Cp+C+ +  T+v+y  g
     KIR64381.1 47 EPTEERCPICRSENLTHVHYIYG 69
                   699***************99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1038.26
//
Query:       KIR64382.1  [L=212]
Description: PadR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-16   60.5   0.3    7.3e-16   57.9   0.3    2.1  1  PadR             Transcriptional regulator PadR-like family
    0.00069   19.7   0.1       0.19   12.0   0.0    3.2  2  HTH_34           Winged helix DNA-binding domain
  ------ inclusion threshold ------
      0.011   16.4   2.0      0.011   16.4   2.0    1.9  2  Vir_act_alpha_C  Virulence activator alpha C-term
      0.048   13.8   0.1        0.1   12.7   0.1    1.6  1  DUF5597          Domain of unknown function (DUF5597)


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.3   1.6e-19   7.3e-16       1      74 [.       6      89 ..       6      90 .. 0.81

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 1.6e-19
                HHHHHCCS-EEHHHHHHHHHCCSTT-C.CTTHHHHHHHHHHHHHTTSEEEEEE-S.........TSSS-EEEEEESHCCCHHHH CS
        PadR  1 iLalleeqpsyGyeiikeleelsegll.elseGslYpaLkrLekeglvesewees.........gegpprkyYrlTdaGrrela 74
                iL+ll+e+p++Gye++kel++ ++ ++ ++s+GslYp+L+rL++ g++++  e+          ++++ r +Y++T++G++++a
  KIR64382.1  6 ILGLLQESPMHGYELRKELAAKLGAIRaAISYGSLYPTLRRLQAAGWITEADETPataeevpalTSRRGRVVYKITAEGKERFA 89
                89********************987652478*****************986655321111112557899************987 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   4.1e-05      0.19      26      72 ..      35      91 ..       9      94 .. 0.73
   2 ?    2.6   0.0     0.033   1.5e+02      58      80 .]     153     175 ..     145     175 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.1e-05
      HTH_34 26 atdgnLsvhlkkLekagYievdke..........fkgkkprtllriTpeGreafkky 72
                +++g L+  l+ L++ag+i+   e          + +++ r +++iT eG+e+f++ 
  KIR64382.1 35 ISYGSLYPTLRRLQAAGWITEADEtpataeevpaLTSRRGRVVYKITAEGKERFAQL 91
                56777777788888888876543211111111225789999*************986 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.033
      HTH_34  58 llriTpeGreafkkyvkaLksll 80 
                 +l++ + G++a +++v++L++l+
  KIR64382.1 153 TLELQRHGLDACEREVRWLEELI 175
                 5667789*************987 PP

>> Vir_act_alpha_C  Virulence activator alpha C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.65   2.9e+03      43      43 ..      45      45 ..      19      94 .. 0.57
   2 ?   16.4   2.0   2.4e-06     0.011      10      74 ..     110     176 ..     104     177 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.65
  Vir_act_alpha_C 43 e 43
                     +
       KIR64382.1 45 R 45
                     0 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 2.4e-06
  Vir_act_alpha_C  10 faaavldpealieeLerrreeheekLaeyeeieerl..eeargqylvLrrgiryeeawieWcdeale 74 
                       + a  d ++ ++ Le rr++ ee+ + +++   r   + + +     r+g++ +e +++W++e ++
       KIR64382.1 110 AFFARTDQATRLRILEGRRRKIEERREGLRDVLGRAaeRLDAYTLELQRHGLDACEREVRWLEELIA 176
                      68889999**********************9999996555777777889***************987 PP

>> DUF5597  Domain of unknown function (DUF5597)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   2.3e-05       0.1      46     105 ..      70     126 ..      19     137 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
     DUF5597  46 tvrygfpqfwdeaapgseepegggliiqlgedefllaGigvrvtfksktekakrvgilrv 105
                 t r+g++     + +++ +++ + li+q g++++  +G gv + f ++t +a+r+ il+ 
  KIR64382.1  70 TSRRGRV---VYKITAEGKERFAQLIAQAGPETYDDTGFGVHFAFFARTDQATRLRILEG 126
                 3333443...33556788888999**************************9999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1422.93
//
Query:       KIR64383.1  [L=359]
Description: inositol-3-phosphate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-31  107.4   0.0    1.2e-30  106.0   0.0    1.7  2  Inos-1-P_synth  Myo-inositol-1-phosphate synthase
    0.00036   20.0   0.0     0.0017   17.8   0.0    2.0  2  NAD_binding_5   Myo-inositol-1-phosphate synthase
  ------ inclusion threshold ------
       0.03   14.5   0.0      0.071   13.3   0.0    1.6  1  DUF1611_N       Domain of unknown function (DUF1611_N) Rossma


Domain annotation for each model (and alignments):
>> Inos-1-P_synth  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.4   8.4e+03      67     101 ..      45      80 ..      21      81 .. 0.68
   2 !  106.0   0.0   1.9e-34   1.2e-30       1     109 []     191     299 ..     191     299 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.4
                     ...EEEEE-GGGT.TEEEEEEEEEEEEGGGEEEEEE CS
  Inos-1-P_synth  67 dhevvikYvpylg.DsKvaldeieseiflggkntie 101
                     +h   +++v + + D K+  + +   i+   +nti+
      KIR64383.1  45 YHVSDVEFVAAFDvDAKKVGMDLAEAIVASENNTIK 80 
                     455666777665447777777777777777777776 PP

  == domain 2  score: 106.0 bits;  conditional E-value: 1.9e-34
                     SHHHHHHHHHHHHHHTT-EEEEEEEEEEE-HHHHHHTTSHHHHHHHHHHHHHHHHHHHSS--EEE....EEE...EE-GGGTTEEEEEEEEEEEE CS
  Inos-1-P_synth   1 GqTklksvLaellverglkvksivslNilGnnDgknlseeerfksKkisKssvvddivkanellyvdhevvi...kYvpylgDsKvaldeiesei 92 
                     G+T+++++La+l+++rg+++ ++++lN++Gn+D++n+ e++r+ sKkisK++ v++++ ++ +   ++ v+i   ++vp+l+D+K+a++++e++ 
      KIR64383.1 191 GATIVHRALAKLFEDRGVELLRTYQLNFGGNMDFMNMLERNRLVSKKISKTQSVTSQIPHEMQ---KSDVHIgpsDHVPWLDDRKWAYIRLEGRS 282
                     9*********************************************************99554...4679************************* PP

                     GGGEEEEEEEEEEEEH. CS
  Inos-1-P_synth  93 flggkntielkleceDS 109
                     f++++ + elkle++DS
      KIR64383.1 283 FGDTPLNAELKLEVWDS 299
                     ****************9 PP

>> NAD_binding_5  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.22   1.3e+03       3      24 ..       6      26 ..       4      36 .. 0.85
   2 !   17.8   0.0   2.8e-07    0.0017     208     307 ..     144     345 ..     137     353 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.22
                   xxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5  3 vllvGlgGnngtTlvagvlank 24
                   v +vG+ Gn ++ lv gv   +
     KIR64383.1  6 VAIVGV-GNCASSLVQGVEYYR 26
                   789**9.*********998766 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2.8e-07
                    xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx................................................... RF
  NAD_binding_5 208 iyavAailegvpyingsPqntl.vpglvelAekkgvfiaGdDfKt................................................... 251
                     ya Aai +g++++n  P      p   +  +  g++i+GdD+K+                                                   
     KIR64383.1 144 FYAQAAIDAGCAFVNALPVFIAsDPEWAKKFTDAGLPIVGDDIKSqvgativhralaklfedrgvellrtyqlnfggnmdfmnmlernrlvskkis 239
                    79****************8766566666666779************************************************************** PP

                    ............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5 252 ............................................................lLAaPlilDLvllveLaqrvevkkekkkefkklesv 287
                                                                                   a +i+D v+ + +a   ++            ++
     KIR64383.1 240 ktqsvtsqiphemqksdvhigpsdhvpwlddrkwayirlegrsfgdtplnaelklevwdsPNSAGVIIDAVRAAKIALDRKIG----------GPI 325
                    *****************************************************999888766777999999999998888888..........799 PP

                    xxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5 288 lsllsyflKaPlvskgtkvv 307
                    ls +syf+K+P v+   +  
     KIR64383.1 326 LSASSYFMKSPPVQYADHDA 345
                    99999999999887555444 PP

>> DUF1611_N  Domain of unknown function (DUF1611_N) Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.2e-05     0.071      35      86 ..     133     179 ..     100     183 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
   DUF1611_N  35 viGiapeggklpeswreavkeAleaGldvvsGlHerLsddpelaalakkkgv 86 
                 +++++ e      + + ++++A++aG+  v+ l  ++++dpe+a+     g 
  KIR64383.1 133 YLPVGSEQ-----ADKFYAQAAIDAGCAFVNALPVFIASDPEWAKKFTDAGL 179
                 44444433.....344789************************997766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2458.10
//
Query:       KIR64384.1  [L=161]
Description: cysteine methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-29  100.7   0.0    5.1e-29  100.2   0.0    1.2  1  DNA_binding_1    6-O-methylguanine DNA methyltransferase, DNA
    9.4e-06   26.3   0.0     0.0094   16.7   0.0    2.2  2  Methyltransf_1N  6-O-methylguanine DNA methyltransferase, rib


Domain annotation for each model (and alignments):
>> DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   0.0   5.7e-33   5.1e-29       1      79 [.      71     151 ..      71     153 .. 0.96

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 5.7e-33
                    HHHHHHHHHHTTS-TT-BEEHHHHHHHTT...TSCHHHHHHHHHTSSBTTTSGGGGEEBTTSBCCTTTTCHHHHHHHHHHT CS
  DNA_binding_1   1 afqqrVwellrqIpyGkvttYgeiAkllg..kpkaaraVgqalaanplailvPcHRVvgadgklggyagglerkralLeaE 79 
                    +f+++Vw+ + +IpyG++ tYge+A+l+g  +p+aaraVg a+++np++++vPcHR+vga  kl g+ ggl rk +lLe E
     KIR64384.1  71 EFERAVWREMTRIPYGETSTYGEVARLVGggDPGAARAVGVACNRNPIPVIVPCHRIVGAGAKLVGFGGGLPRKVKLLELE 151
                    69**************************9445***********************************************99 PP

>> Methyltransf_1N  6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00075       6.7       2      24 ..       1      23 [.       1      30 [. 0.86
   2 !   16.7   0.0   1.1e-06    0.0094      55      76 ..      45      65 ..      36      66 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00075
                     -EEEEEEETTEEEEEEEETTCEE CS
  Methyltransf_1N  2 lyytlidsplgrlllagdEkgll 24
                     +++t++dsp+g + +a d +  +
       KIR64384.1  1 MRWTVLDSPIGAFSVATDDDAVC 23
                     89*************99877655 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.1e-06
                     HHHHHHHHHHHHHS--B-SHCH CS
  Methyltransf_1N 55 lkqaleeYfageekpaltlPld 76
                     ++++l++Yfage++ ++t+P++
       KIR64384.1 45 AVAELRAYFAGELT-EFTVPVA 65
                     789***********.*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1202.04
//
Query:       KIR64385.1  [L=181]
Description: hypothetical protein TK50_01465 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0096   15.6   1.0      0.017   14.8   1.0    1.5  1  DUF697    Domain of unknown function (DUF697)


Domain annotation for each model (and alignments):
>> DUF697  Domain of unknown function (DUF697)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.0   9.6e-07     0.017      85     139 ..      57     111 ..      51     134 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.6e-07
      DUF697  85 laglGlvelgtdllkqllslnlatklsaraaQGvvagllTarvGlsaieylrpla 139
                 ++++G+  +g+ ++++ll++  +++++a++a G+va++ Ta v   + +  r + 
  KIR64385.1  57 AGFAGAFGFGAAIVNELLGARTPGMVAAAVAGGAVAAVPTAWVAARMSRAARTMR 111
                 6899**************************************9998877776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1427.80
//
Query:       KIR64386.1  [L=503]
Description: band 7 protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-10   40.0   9.6    3.8e-10   40.0   9.6    5.9  6  Flot      Flotillin
    2.6e-08   34.1  55.5    2.2e-05   24.5  54.7    4.6  1  Band_7    SPFH domain / Band 7 family
  ------ inclusion threshold ------
       0.14   12.4   0.6       0.27   11.5   0.6    1.4  1  DUF1319   Protein of unknown function (DUF1319)
        2.9    6.6   8.1        6.7    5.4   8.1    1.5  1  DLIC      Dynein light intermediate chain (DLIC)
        3.5    7.5  15.5        4.5    7.2  15.5    1.2  1  TFIIA     Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> Flot  Flotillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.72   2.6e+03      69     107 ..     103     147 ..      99     158 .. 0.66
   2 ?   -6.4  11.2         5   1.8e+04       7      46 ..     210     249 ..     201     252 .. 0.51
   3 ?   -4.9  10.0         5   1.8e+04       2      45 ..     245     288 ..     244     299 .. 0.75
   4 ?   -8.2  20.0         5   1.8e+04       1      29 [.     310     340 ..     290     354 .. 0.62
   5 ?  -14.2  25.9         5   1.8e+04       1      31 [.     310     342 ..     310     376 .. 0.70
   6 !   40.0   9.6   1.1e-13   3.8e-10       2      87 ..     375     460 ..     374     482 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.72
        Flot  69 dsikilqvgGltg......aegggagggggslveqllnsllkyra 107
                  ++ i++vgG++       ++  +++++  +++ ++l ++l++ +
  KIR64386.1 103 HGVAIVKVGGTEDairaaaQRFLHQQDEIDNFTREVLAGALRSIV 147
                 678888888877777766555555566667777777777777655 PP

  == domain 2  score: -6.4 bits;  conditional E-value: 5
        Flot   7 eaakleAeAkrakaeaeAegiralnEAenalseeqialqv 46 
                 +aa+ eA A ++  +    +++a++EA++ ls +q a q+
  KIR64386.1 210 DAAIAEARARQQAEQERLLAEEAIAEANRNLSLKQAAIQA 249
                 3333333333322222233456777777777777766665 PP

  == domain 3  score: -4.9 bits;  conditional E-value: 5
        Flot   2 AeaeAeaakleAeAkrakaeaeAegiralnEAenalseeqialq 45 
                 A  +Ae    +A+ + a  +a+Ae  +a++  ++++ e + +l+
  KIR64386.1 245 AAIQAEIDAAKAKSAAAGPLAQAERDQAILSEQQKVAERNAELK 288
                 66778888888888888999999999988877777777665554 PP

  == domain 4  score: -8.2 bits;  conditional E-value: 5
        Flot   1 eAeaeAeaakleAeA..krakaeaeAegira 29 
                 eAea ++aa l+A+A  +  +a+a+A++++a
  KIR64386.1 310 EAEAARNAAVLNADAqrQATIAAAQAAAEQA 340
                 4566666666666663223344444444444 PP

  == domain 5  score: -14.2 bits;  conditional E-value: 5
        Flot   1 eAeaeAeaakleAeA..krakaeaeAegiraln 31 
                 eAea ++aa l+A+A  +  +a+a+A++++a++
  KIR64386.1 310 EAEAARNAAVLNADAqrQATIAAAQAAAEQARL 342
                 688888888888888444445666666666654 PP

  == domain 6  score: 40.0 bits;  conditional E-value: 1.1e-13
        Flot   2 AeaeAeaakleAeA..krakaeaeAegiralnEAenalseeqialqvklallealPeiieeavkplekidsikilqvgGltg..aeggga 87 
                 A aeA + +++AeA  + ak++aeA++++ ++EA  a++e++++  +     ++lP+++e+a++p+  id++++++++G+    ++++++
  KIR64386.1 375 AIAEAVEREGQAEAaaILAKGQAEADAMARKAEAFAAYGEAAVLDLLV----RVLPQVVEAASAPIGAIDKMTVISTDGASTltKSVASN 460
                 5677888888888777*************************9998887....9**************************98855333333 PP

>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5  54.7   6.3e-09   2.2e-05       3     176 ..      28     218 ..      26     415 .. 0.95

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 6.3e-09
      Band_7   3 ieegevgvvvr.fGklsrvlepG..............lhfilPfgrsvtvvsvrvqtldvsvsltvptkDglpvtidvtviyrv...pddapklvaave 83 
                 ++++e+ +v++  G+  ++ + G                f+lP ++++   +++ +++dv     +++k g+++ + +++i++v   +d ++++++++ 
  KIR64386.1  28 AGPNEAFIVTGrKGRTTETADGGrstdmsgqkvvlgaSVFVLPVVQKLQSLDLSSRRIDVGI-KGAVSKQGIRAELHGVAIVKVggtEDAIRAAAQRFL 125
                 689******7779999996666666666666676665888**************99999999.8999*******************8777788888888 PP

      Band_7  84 resanldnlirrvlesalrevisemtleellsnreelaeelknelneqlrkyGvevldvritdidpppevaqalaakqaaeaeaqaeiaraea 176
                  +++++dn+ r+vl +alr++++++t+ee++++r+++a+ +++e    +  +G+ +  ++++di+ +  + q l +  aa+  ++a+ia+a+a
  KIR64386.1 126 HQQDEIDNFTREVLAGALRSIVGRLTVEEVIRDRAAFASAVAEEAEHSMTNQGLVLDTFQLQDIVAEGSYLQDLGRPEAARVLKDAAIAEARA 218
                 899*********************************************************************************999999997 PP

>> DUF1319  Protein of unknown function (DUF1319)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   7.4e-05      0.27      33     107 ..     196     297 ..     150     298 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.4e-05
     DUF1319  33 v.............................nlkslkivkekrrslekqlkklkselkklrelylerrPlskqeveelvveiskqPklieeealrlteel 102
                 +                              l +  ++ e +r+l  +   ++ e+   +++     Pl++ e ++ +  +s+q k+ e++a+   ++l
  KIR64386.1 196 LqdlgrpeaarvlkdaaiaeararqqaeqeRLLAEEAIAEANRNLSLKQAAIQAEIDAAKAKSAAAGPLAQAERDQAI--LSEQQKVAERNAELKQRQL 292
                 055555555555555555555555555555555567899*********************************999876..69**********9999999 PP

     DUF1319 103 klkle 107
                 +  ++
  KIR64386.1 293 DTEVR 297
                 88775 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   8.1    0.0019       6.7     326     461 ..     266     408 ..     248     415 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0019
        DLIC 326 qaedeqvflvkqqsllakqpatatrgvesparsqsgsprttnrsapanvasvspqssvkkidpklkaaaas..eGvlanf....fnsllskksGsPgsa 418
                 qae +q+ l+ qq++ +++++  +r  ++ +r ++ ++r +    ++++ +++  ++  +  + + aa+a+  +  l+        + l+      g+ 
  KIR64386.1 266 QAERDQAILSEQQKVAERNAELKQRQLDTEVRKPADAARYKVEQEAEAARNAAVLNADAQRQATIAAAQAAaeQARLTGEgeraRRAALAEANAIEGAK 364
                 89***********************************99887776666666666666555555555554443133333220000223333333333332 PP

        DLIC 419 gagggaaagrgsnvqdsvkksgk...kavltdvqaeldrlsrkvdk 461
                    g a   r s + ++v++ g+    a+l+  qae d ++rk++ 
  KIR64386.1 365 --EGEAEQRRRSAIAEAVEREGQaeaAAILAKGQAEADAMARKAEA 408
                 ..33444556666677776655511157889999999999999875 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  15.5    0.0012       4.5     147     309 ..     210     440 ..     121     466 .. 0.42

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0012
       TFIIA 147 qasgaqqiaaqplqqvvqq.............sqgsaaqssvaalqaqsqqaqalaepqqqlekq................qqqqqqqqqqqqqqqvqq 216
                  a  a+++a q+++q                  +++a+q+++ a +a+s                                qq++ +++++++q+q ++
  KIR64386.1 210 DAAIAEARARQQAEQERLLaeeaiaeanrnlsLKQAAIQAEIDAAKAKSA--------------AagplaqaerdqailseQQKVAERNAELKQRQLDT 294
                 45555555554444443311111111111222222233333333333211..............12233322222222222222444444444444444 PP

       TFIIA 217 qqqe..........esqqaqqa.sqeqvagsqvessqtdgaedaleeespv.legelsaeeeagaqkeelsreeidrire................... 284
                 + ++          +   +++a  + +v ++ ++ + t  a++a++e++++  ege ++++ a a+ + ++ ++     e                   
  KIR64386.1 295 EVRKpadaarykveQ---EAEAaRNAAVLNADAQRQATIAAAQAAAEQARLtGEGERARRA-ALAEANAIEGAK-----Egeaeqrrrsaiaeavereg 384
                 444344444332221...1111111122222333333333333333333332222222221.222111111111.....01111111112221111112 PP

       TFIIA 285 ealkakelekeskkkkraeessla.....................................................d 309
                 +                      a                                                     d
  KIR64386.1 385 Q----------------------AeaaailakgqaeadamarkaeafaaygeaavldllvrvlpqvveaasapigaiD 440
                 1......................0112222223333333333444444455555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1750  (0.0976072); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 3347.35
//
Query:       KIR64387.1  [L=697]
Description: peptidase S8 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-37  129.9  13.9    2.4e-37  128.8  11.6    2.3  2  Peptidase_S8     Subtilase family
    7.8e-11   42.0   2.3    1.5e-05   24.8   0.4    3.5  4  FRG1             FRG1-like domain
    9.4e-10   39.1   6.7    9.9e-05   23.0   0.7    4.1  4  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    9.5e-10   39.0   0.0    2.2e-09   37.8   0.0    1.7  2  Inhibitor_I9     Peptidase inhibitor I9
    0.00014   22.1   0.3        5.8    7.2   0.0    4.1  3  Fascin           Fascin domain
  ------ inclusion threshold ------
       0.15   12.1   0.0        2.2    8.4   0.0    2.7  3  FGF              Fibroblast growth factor


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.13   3.8e+02      79     115 ..      73     106 ..      64     130 .. 0.80
   2 !  128.8  11.6     8e-41   2.4e-37       3     280 ..     186     409 ..     166     418 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.13
                   SSSSB-SSTTSEEEEEE-SSTTSB-HH..HHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  79 egekngvapgakilsvkvldtsggsmetgteliraie 115
                   + + +gv pg  i ++k++++s ++  +    ++a++
    KIR64387.1  73 DASTKGVVPGRYIVKLKNGKASASTTRS---TVKALS 106
                   67899**************999988754...444444 PP

  == domain 2  score: 128.8 bits;  conditional E-value: 8e-41
                   T-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-SST CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   3 gvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvldt 99 
                   gv+  ++D+G++ +h d+                   g +    ++ +  +a+d ng    HGthvAG+++++        gva ++++ +v+vld 
    KIR64387.1 186 GVTAYIIDSGININHQDFG------------------GRASSGFDAIDGGDAADCNG----HGTHVAGTVGGT------TYGVAKDVDLVAVRVLDC 254
                   4444456666666666644..................12223333333333344444....***********9......99**************77 PP

                   TSB-HH..HHHHHHHHHHHH..CT-SEEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEEES CS
                   xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 100 sggsmetgteliraieeaae..dkvdvinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvgayt 194
                   +g  ++  ++++++i+++ +  +k+ v nmslg ++ +p  ++     ai + +  +g+ +v++aGN+        + +  ++p+ +  +itvga++
    KIR64387.1 255 EGYGST--EGVVAGIDWVTNnaQKPAVANMSLG-GDVDPVLDD-----AIATSI-GQGITYVVAAGNEA-------DDACAYSPARAPAAITVGATD 335
                   776664..9*********99556666*******.999999997.....677888.88************.......6677899999*********** PP

                   TTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCC CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 195 tegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallnt 280
                     +++a fS++G +       d  apG+ i s w   +      + +++++GTSmA+P++ag+aA+ll  +p++tp++vr a++++
    KIR64387.1 336 RVDMMAGFSNYGTCL------DTFAPGVGITSAWIGGT------TATETINGTSMAAPHVAGIAAQLLAQNPSWTPQQVRNAVVTN 409
                   **************9......6*******999999999......3479**********************************9986 PP

>> FRG1  FRG1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.4   5.1e-09   1.5e-05      30     107 ..     472     554 ..     468     565 .. 0.79
   2 !    9.8   0.1    0.0002       0.6      39      96 ..     524     584 ..     521     589 .. 0.86
   3 !   13.0   0.0   2.1e-05     0.064      41      99 ..     569     631 ..     563     649 .. 0.80
   4 ?    1.2   0.0     0.088   2.6e+02      46      74 ..     664     694 ..     658     695 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 5.1e-09
        FRG1  30 ftavkvasdekislKsg.yGkYlgvdkegi..lsaraeAisseEqfevvfee.gktallalaketflsvdeekd..ivakskka 107
                 f +v v s   ++lKs+ +GkY+  d +g   l+a+++Ai+s E+f +v ++ g ++l a  +++++++d  +   ++aks   
  KIR64387.1 472 FDVVSV-SSGVVALKSKaNGKYVAADGSGSkpLIAKSTAIGSWEKFALVNNTdGSVSLKAQVNGKYVAADGAGTkpLLAKSASI 554
                 667778.77889***9659*******766444*****************9762678899999******9987665666666655 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0002
        FRG1  39 ekislKsg.yGkYlgvdkegi..lsaraeAisseEqfevvfeegktallalaketflsvde 96 
                   +slK++ +GkY+  d  g+  l a++  i++ E+f     +  +++ a a+++f+++d 
  KIR64387.1 524 GSVSLKAQvNGKYVAADGAGTkpLLAKSASIGAWEKFDFEAPNPIVSVKAKANGKFVAADG 584
                 5699**9768*******7775559**************99889999999999999999875 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 2.1e-05
        FRG1  41 islKsg.yGkYlgvdkegi..lsaraeAisseEqfevv.feegktallalaketflsvdeekd 99 
                 +s+K++ +Gk++  d  g   l a+++A+++ E++e+v    g +a+ al ++++++++  ++
  KIR64387.1 569 VSVKAKaNGKFVAADGAGSkpLLAKSTAVGAWEKYELVdLGYGWVAFRALVNNKYVTAQSGGS 631
                 56676438*******7664449***************9557899************9988655 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.088
        FRG1  46 gyGkYlgvdkegi..lsaraeAisseEqfev 74 
                  +Gk ++ d+ g   l+a+++ +++ Eqf++
  KIR64387.1 664 ANGKIVKADSGGSkpLIAKSTSVGAWEQFTI 694
                 5899999998764449*************86 PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         6   1.8e+04      61      75 ..     404     418 ..     388     428 .. 0.55
   2 !   23.0   0.7   3.3e-08   9.9e-05       4      89 .]     471     557 ..     461     557 .. 0.84
   3 !   15.4   0.1   7.6e-06     0.023       3      89 .]     558     644 ..     556     644 .. 0.86
   4 ?    2.2   0.1     0.099     3e+02       8      49 ..     650     689 ..     642     695 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6
                      EEEEEETTTTEEEEE CS
  RicinB_lectin_2  61 tyrivnkasgkvLdv 75 
                      +  ++n  sg vL  
       KIR64387.1 404 NAVVTNGVSGAVLGP 418
                      334444444444444 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 3.3e-08
                      EEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-....STTEEEEEE CS
  RicinB_lectin_2   4 qWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggst....anGtnvqqw 89 
                      ++ + s+++g++ +k++a+gk+++++g++ +    +  ++ + +   ++ l++++dg+++++++ +gk++  +g++t    a  ++++ w
       KIR64387.1 471 KFDVVSVSSGVVALKSKANGKYVAADGSGSK---PLIAKSTAIGSWEKFALVNNTDGSVSLKAQVNGKYVAADGAGTkpllAKSASIGAW 557
                      333458999*******************999...47777778999****************************99987777777777766 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 7.6e-06
                      GEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-....STTEEEEEE CS
  RicinB_lectin_2   3 QqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggst....anGtnvqqw 89 
                       ++ + + +++ +++k++a+gk+++++g++ +    +  ++ + +a  ++ l+d+g g++ +++  ++k+++ ++g++    a G++v  w
       KIR64387.1 558 EKFDF-EAPNPIVSVKAKANGKFVAADGAGSK---PLLAKSTAVGAWEKYELVDLGYGWVAFRALVNNKYVTAQSGGSqpllAKGSAVSDW 644
                      46667.678999*****************999...47777778999**********************99999998887888888887655 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.099
                      C.ETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GG CS
  RicinB_lectin_2   8 g.sggdgyytiknvasgkvLdvaggstanganvqqwtcsgaan 49 
                      g +++dg++++ + a+gk + +++g+ ++   +  ++ s +a 
       KIR64387.1 650 GwHHPDGTVHLYANANGKIVKADSGGSKP---LIAKSTSVGAW 689
                      55677889999999999999888777772...33333333344 PP

>> Inhibitor_I9  Peptidase inhibitor I9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   7.4e-13   2.2e-09       1      79 [.      83     151 ..      83     154 .. 0.84
   2 ?   -4.0   0.0         6   1.8e+04      40      56 ..     174     191 ..     169     194 .. 0.71

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 7.4e-13
                   EEEEEE-TTS-HHHHHHHHHHHHH....HHHHTT..--EEEEEEESSSSSEEEEEE-GGGHHHHHTSTTEEEEEEEEEE CS
  Inhibitor_I9   1 vYIVtfkeaakaakkassheswhqsllksvlkgedsakagilysYkilfnGfavklteeqaeklrkrpeVesVepDqsv 79 
                   +YIV++k++ ++a+ ++s ++  +          + +  ++ + +  +++G++++lt++qa++l+++p+V++Vep ++v
    KIR64387.1  83 RYIVKLKNGKASASTTRSTVKALS----------KANGGTVRKVFTGALRGYSAQLTPAQAKRLAADPDVAYVEPVRKV 151
                   6******98888886666666666..........2358899999999***************************97766 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6
                   EEEEEESS.SSSEEEEEE CS
  Inhibitor_I9  40 gilysYki.lfnGfavkl 56 
                    + +sY + + +G  +++
    KIR64387.1 174 ALSKSYTYpSSSGVTAYI 191
                   567888888888877765 PP

>> Fascin  Fascin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0032       9.5      75     110 ..     480     517 ..     471     518 .. 0.82
   2 !    7.2   0.0    0.0019       5.8      38     110 ..     526     604 ..     516     605 .. 0.72
   3 ?    3.2   0.0     0.034     1e+02      44     110 ..     620     693 ..     611     694 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0032
                 TCEEEEEETTSCEEE..ECTTTEEEEEESSSSGGGEEE CS
      Fascin  75 grwallresngryLg..igkeglLkasastvgkdelft 110
                 g  al+++ ng+y++  +++++ L a+++++g  e f+
  KIR64387.1 480 GVVALKSKANGKYVAadGSGSKPLIAKSTAIGSWEKFA 517
                 45678999******986677888*********999997 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0019
                 EEEE.ETTSEEEEE-TTSB..EEEEESS--GGGEEEEEEE.TCEEEEEETTSCEEE..ECTTTEEEEEESSSSGGGEEE CS
      Fascin  38 vaLr.shngkYlsldkdGr..vvaeaetkeedtlFelefr.grwallresngryLg..igkeglLkasastvgkdelft 110
                 v L+   ngkY+++d  G+  ++a++ +  +   F++e+      ++++ ng++++  + +++ L a++++vg+ e ++
  KIR64387.1 526 VSLKaQVNGKYVAADGAGTkpLLAKSASIGAWEKFDFEAPnPIVSVKAKANGKFVAadGAGSKPLLAKSTAVGAWEKYE 604
                 3566467888988777776557777777888888888888556778999999999975566778999999999888876 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.034
                 TSEEEEE-TTSB..EEEEESS--GGGEEEEEEE...TCEEEEEETTSCEEE..ECTTTEEEEEESSSSGGGEEE CS
      Fascin  44 ngkYlsldkdGr..vvaeaetkeedtlFelefr...grwallresngryLg..igkeglLkasastvgkdelft 110
                 n+kY+++++ G+  ++a+++  +    F + ++   g   l ++ ng+ ++  +g+++ L a++++vg+ e ft
  KIR64387.1 620 NNKYVTAQSGGSqpLLAKGSAVSDWEAFFVGWHhpdGTVHLYANANGKIVKadSGGSKPLIAKSTSVGAWEQFT 693
                 67888877777555667777666666777777778777778888999999987788899999999999999998 PP

>> FGF  Fibroblast growth factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00074       2.2      33      62 ..     471     500 ..     467     514 .. 0.89
   2 ?   -0.5   0.0      0.43   1.3e+03      33      61 ..     515     543 ..     502     552 .. 0.82
   3 ?   -2.9   0.0       2.4   7.1e+03      43      61 ..     568     586 ..     559     589 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00074
         FGF  33 ileiesvsvgvvrikgvesgrYlamnkkGr 62 
                 ++ + svs gvv++k++++g+Y+a + +G 
  KIR64387.1 471 KFDVVSVSSGVVALKSKANGKYVAADGSGS 500
                 78999*******************998885 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.43
         FGF  33 ileiesvsvgvvrikgvesgrYlamnkkG 61 
                 ++ +   + g v++k+  +g+Y+a +  G
  KIR64387.1 515 KFALVNNTDGSVSLKAQVNGKYVAADGAG 543
                 55666666699************988776 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.4
         FGF  43 vvrikgvesgrYlamnkkG 61 
                 +v++k++++g+++a +  G
  KIR64387.1 568 IVSVKAKANGKFVAADGAG 586
                 799999*****99987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4824.00
//
Query:       KIR64388.1  [L=486]
Description: HDIG domain-containing protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-32  113.2   0.3    2.7e-32  111.8   0.0    1.9  2  PolyA_pol        Poly A polymerase head domain
    3.2e-18   65.2   0.0    6.6e-18   64.2   0.0    1.5  1  PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polym
    1.2e-10   41.6   0.3      3e-10   40.4   0.3    1.7  1  HD               HD domain
     0.0021   18.1   0.0     0.0039   17.2   0.0    1.3  1  tRNA_NucTran2_2  tRNA nucleotidyltransferase domain 2 putativ


Domain annotation for each model (and alignments):
>> PolyA_pol  Poly A polymerase head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.0   6.1e-36   2.7e-32       2     126 .]      48     171 ..      47     171 .. 0.97
   2 ?   -3.5   0.1         3   1.3e+04      85      93 ..     414     427 ..     389     438 .. 0.52

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 6.1e-36
                 EEETHHHHHHHTT---CEEEEEECS-HHHHHHHHHHHHT-EEEEETTTTCCCCEECCEEEEECCEECEEEEEE---SSHHH...HHHHHHCTSSBGGGS CS
   PolyA_pol   2 ylvGGaVRDlllgkepkDvDlatdaapeelakllrkkvkeallsgeefqtiavlekkqllevatfRlekdesdarnpesekstesleeDlkrRDftiNa 100
                  lvGG+VRD+llg+  +D+D+ tda+p++  ++ + +++  +++g+ef+ti ++ +  +le++t+R+e + + +rnp ++++ +sl+eDl rRDftiNa
  KIR64388.1  48 HLVGGSVRDALLGRLGDDLDFCTDAHPDQTLRIVKGWAESIWETGREFGTIGCQRDGLRLEITTYRAEAYDQVSRNP-VVEYGTSLTEDLRRRDFTINA 145
                 79********************************************************************9999999.688899*************** PP

                 -EEECTTTCEE-TTSHHHHHHTTEE- CS
   PolyA_pol 101 laynlnkgkvlDlfgGikdLkskvir 126
                 +a++l   ++ D+ gG++dL  +vir
  KIR64388.1 146 MAVSLPAHRFTDPHGGLDDLAARVIR 171
                 ************************97 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3
                 ......HHHHHHCT CS
   PolyA_pol  85 e.....sleeDlkr 93 
                 e     ++eeDl+r
  KIR64388.1 414 EriariAAEEDLAR 427
                 02233467777765 PP

>> PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polymerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   1.5e-21   6.6e-18       2      60 ..     199     257 ..     198     260 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 1.5e-21
  PolyA_pol_RNAbd   2 FtIepeTaaairklaplLkkispeRifeEllKlLlsghpeaglelLretgLlkylfPel 60 
                      F ++p+++aa++ +a  L++i++eRi++E++KlL++ +p  gl+lL++tgL + ++Pel
       KIR64388.1 199 FAVHPDVRAAMTSMAADLDRITAERIRDEFTKLLCGADPITGLRLLVDTGLADRFLPEL 257
                      99********************************************************9 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.3   6.6e-14     3e-10       1      99 [.     273     380 ..     273     421 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 6.6e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHTTCCHHHHHH CS
          HD   1 rleHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgld...ledvaklirehheswegkk 96 
                 ++eH+l V   a  +  d        +l++aaL+HD+Gk+ +   ++   + + +f+ He+vga++++++ k  +++   +  v+kl+  h++   g++
  KIR64388.1 273 VYEHTLTVVANAVSYETDGC----DFVLRMAALMHDVGKPATKAVGS---DGRVSFHHHEVVGARLTKARMKAMRYPkdvTAQVVKLVGLHLRFY-GYG 363
                 699*********99998854....889**************887444...55889999****************999****************99.576 PP

                 HH..............H CS
          HD  97 rp..............r 99 
                 r                
  KIR64388.1 364 RGewtdsavrryvtdaG 380
                 66666555544444440 PP

>> tRNA_NucTran2_2  tRNA nucleotidyltransferase domain 2 putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.7e-07    0.0039      27     131 ..     335     458 ..     328     464 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.7e-07
  tRNA_NucTran2_2  27 fLkswkfsnklikavtallkllekrk...naeltklelykageealllaeelaqaqgqa......edlqaldeiyqaLp.....IkskkeLa.. 104
                       +k+ +++++++ +v++l+ l+ +      +e+t+  ++++  +a  l+ +l+++++ +       + +al+  y+aL+     I+  ++La  
       KIR64388.1 335 RMKAMRYPKDVTAQVVKLVGLHLRFYgygRGEWTDSAVRRYVTDAGDLLARLHKLTRSDcttrnrRKAAALAADYDALEeriarIAAEEDLArv 428
                      58999**************9988777899***************99999999888887777888899999999999996333335578888655 PP

  tRNA_NucTran2_2 105 ...itGkdLlealgvkpGpwlgeiLkeleq 131
                         ++G+  +e lgv+pGp +g++ k l++
       KIR64388.1 429 rpdLDGNAIMELLGVPPGPIVGRAWKHLKE 458
                      5558******************99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3631.88
//
Query:       KIR64389.1  [L=581]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-81  272.9  31.2    5.3e-81  272.5  31.2    1.1  1  MurJ             Lipid II flippase MurJ
    8.6e-07   29.1  23.0    8.6e-07   29.1  23.0    4.2  5  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai
     0.0018   17.5   0.7     0.0018   17.5   0.7    2.9  2  Bac_export_2     FlhB HrpN YscU SpaS Family
     0.0071   16.0  27.5      0.011   15.3   9.3    3.4  3  MatE             MatE
  ------ inclusion threshold ------
        1.2    9.4   0.0        1.2    9.4   0.0    2.4  3  Sigma_reg_N      Sigma factor regulator N-terminal
        4.5    7.2   6.9        0.9    9.5   2.7    1.9  2  DUF2076          Uncharacterized protein conserved in bacteri


Domain annotation for each model (and alignments):
>> MurJ  Lipid II flippase MurJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.5  31.2   1.8e-84   5.3e-81       3     434 ..      78     527 ..      76     541 .. 0.94

  Alignments for each domain:
  == domain 1  score: 272.5 bits;  conditional E-value: 1.8e-84
        MurJ   3 allGaglladaFnvAfklPnllrrlfaegalssaFvPvlaeakkkdeekaaefvrkvltllilvlllvtligilaapllirllatgf.deetlelavsl 100
                 a+lG +l++da++ A  lP ++++ + +g+l+s+++Pvl +++k d++++++ ++++ltl++++l++++l+++ +a ll +l a++    + + l ++l
  KIR64389.1  78 AALGGALVGDAYTTAQILPGMVYEFLLGGILTSVLIPVLVRRRKADADQGQAYTQRLLTLAVVTLAVAALLAVAGASLLTALYASDKsSGDYQDLVTKL 176
                 689**********************************************************************************998999999***** PP

        MurJ 101 lrillpylllvslsavfgavLnarkkFfapafsPvllNvsvIltllllanklgeeail...........aLaiGvliGgvlqllvqlpalkkaglllkp 188
                  +++lp++++ +lsa+++avLn+r++F+ap+++P+l+N++vI t++l+ + +g ++i+            ++ G+l+G+ +q++  lpal+k g+++++
  KIR64389.1 177 SYLMLPMIFFTGLSALISAVLNTRGHFAAPMWAPILNNLVVIGTVGLYIAIFG-AEIVepeqmttgrilLIGGGTLLGVAIQAAGLLPALRKVGFRWRL 274
                 *****************************************************.66667999999887769**************************** PP

        MurJ 189 rfafrdeglkkflklllptllgvsvsqlnllvdtalAsf...laegsvsilayadrilqlPlglfgvsistvlLPrlSrsakekdedevrdllsqairl 284
                 rf+fr  gl+++ +l ++++ +v+vsq++l+v ++l       ++ ++ i+++  ++l+++ g+++vsi t+l+Pr+S +a+++   ++ ++ls ++r+
  KIR64389.1 275 RFDFRALGLGELGRLGAWMFCYVAVSQIGLIVLFNLLNRagrENAAGPLIYNNVFLLLMMAHGIIAVSIITALMPRMSAAAADGRYADLAADLSRGTRT 373
                 ********************************9998555455789999*************************************************** PP

        MurJ 285 tllllipvsfgllvlskpivsllferGnFseedveataevLaayalgLipyalvklllrvfYAredtktPvkislislvlnills....llllpplgvv 379
                 ++++l p+++  +vl+ p+  +lf +G+Fs+e+++at+ vL + al+L+p+a+ +l++ +fYA  dt+tP+ i + ++ l i+++      +  +++++
  KIR64389.1 374 VTAVLAPIAVCYAVLAGPLSVTLFRYGAFSDENATATSLVLLVAALALVPFAVSQLFTFAFYALPDTRTPALINIPVVALRIGVQialfAAFSATFAAA 472
                 **************************************************************************999999988885555666778899* PP

        MurJ 380 glalatslsaliglvllyvllrkrlklteargiktflaklvvllalaavvillls 434
                 g+ +++++s+l+ +v+  +llr r++     gi+ +l k++v+++ aa + ll+ 
  KIR64389.1 473 GMMIGNAVSYLAAAVFSAMLLRPRVGRIGLGGILRTLGKVLVAALGAALAGLLVV 527
                 ***************************************6666555555555554 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.5      0.75   2.2e+03      91     107 ..      70      86 ..      51     122 .. 0.48
   2 ?   -2.1   2.3       1.3   3.8e+03      91     104 ..     134     147 ..      94     162 .. 0.40
   3 ?   -1.0  16.0      0.55   1.6e+03       4     120 ..     179     327 ..     176     350 .. 0.66
   4 ?   -4.8   5.7         6   1.8e+04      87     112 ..     324     348 ..     251     400 .. 0.59
   5 !   29.1  23.0   2.9e-10   8.6e-07       1     142 [.     413     564 ..     413     565 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.75
  Polysacc_synt_C  91 llkpllaalvmgivvyl 107
                      +l++l++++++g+++++
       KIR64389.1  70 FLRTLALTAALGGALVG 86 
                      23334444444444222 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.3
  Polysacc_synt_C  91 llkpllaalvmgiv 104
                      ll +++++l+++++
       KIR64389.1 134 LLTLAVVTLAVAAL 147
                      22222222222222 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.55
  Polysacc_synt_C   4 ilalsiiflslstvlssiLqglgrqkialkalvigalvklilnllliplfgi...............vGaaiatvlallvvavlnlyalrrllg 82 
                      ++ ++i+f++ls + s++L+  g+  ++++a ++  lv ++   l i  fg+               +G   +t+l+ ++ a+ +l alr+ +g
       KIR64389.1 179 LMLPMIFFTGLSALISAVLNTRGHFAAPMWAPILNNLVVIGTVGLYIAIFGAeivepeqmttgrillIG--GGTLLGVAIQAAGLLPALRK-VG 269
                      57899**********************************************999999999977776655..67888888888887777776.66 PP

  Polysacc_synt_C  83 ikl....ellrrll..kpllaalvmgiv..vylllllllglllla.............a 120
                      +++    + +r l    +  +++ m++   v  + l++l  ll+              +
       KIR64389.1 270 FRWrlrfD-FRALGlgELGRLGAWMFCYvaVSQIGLIVLFNLLNRagrenaagpliynN 327
                      77766653.44443343333333333331133333333333332244455555555553 PP

  == domain 4  score: -4.8 bits;  conditional E-value: 6
  Polysacc_synt_C  87 llrrllkpllaalvmgivvyllllll 112
                      ++++++ +l++a ++ +v  +++ l+
       KIR64389.1 324 IYNNVFLLLMMAHGIIAV-SIITALM 348
                      333333222222222222.2233333 PP

  == domain 5  score: 29.1 bits;  conditional E-value: 2.9e-10
  Polysacc_synt_C   1 vLailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllliplfgi....vGaaiatvlallvvavlnlyalrrllgikl..ell 88 
                      vL + al+++++++s++++  + +l  +++++++++  +++ +++++ l   f++     G++i+ ++++l++av+  ++lr ++g      +l
       KIR64389.1 413 VLLVAALALVPFAVSQLFTFAFYALPDTRTPALINIPVVALRIGVQIALFAAFSAtfaaAGMMIGNAVSYLAAAVFSAMLLRPRVGRIGlgGIL 506
                      68899***********************************9999999999777644555******************9999987776556999* PP

  Polysacc_synt_C  89 rrllkpllaalvmgivvylllllllglllla...al.alllavlvgalvYlllllllr 142
                      r+l k+l+aal+ +++ +l+++ll+g  +l+   a+  l+++++v a  Yl+l+++lr
       KIR64389.1 507 RTLGKVLVAALGAALAGLLVVNLLPGGDTLSwpqAVfRLVVGGAVIAGTYLGLAMVLR 564
                      ****************8888888887666666665569999999*******9999987 PP

>> Bac_export_2  FlhB HrpN YscU SpaS Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.7   6.1e-07    0.0018      10     113 ..     118     217 ..     117     230 .. 0.88
   2 ?   -1.0   7.4      0.26   7.9e+02      28     129 ..     406     517 ..     400     533 .. 0.56

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6.1e-07
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2  10 kklrdarekGqvakskelssalvllaglllllllgpslveelaellrevlsalelllelllallllllplllvlllaallanllqvgflfstkalkp 106
                   ++++   ++Gq    + l+ a+v+la+++ll+++g sl+++l +  +++      +++l+++l  l+lp+++++ l al++ +l ++  f++   +p
    KIR64389.1 118 RRRKADADQGQAYTQRLLTLAVVTLAVAALLAVAGASLLTALYASDKSS----GDYQDLVTKLSYLMLPMIFFTGLSALISAVLNTRGHFAAPMWAP 210
                   57777789**********************************9944443....3469999**************************99999988888 PP

                   XXXXXXX CS
  Bac_export_2 107 klsklnp 113
                    l++l +
    KIR64389.1 211 ILNNLVV 217
                   8887765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.26
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2  28 ssalvllaglllllllgpslveelaellrevlsa...........lelllelllallll...llplllvlllaallanllqvgflfstkalkpklsk 110
                   +++++ l++l++ l+l+p++v++l ++  ++l +           +  +l++ ++++l+    ++++++ ++++ ++++l    +fs+  l+p++ +
    KIR64389.1 406 NATATSLVLLVAALALVPFAVSQLFTFAFYALPDtrtpalinipvV--ALRIGVQIALFaafSATFAAAGMMIGNAVSYLA-AAVFSAMLLRPRVGR 499
                   4455556666667788888888888877777766787777666431..233333333220013334444444444444444.678888888888888 PP

                   XXXXXXXXXXXXXXXXXXX CS
  Bac_export_2 111 lnplkglkrifslrslvel 129
                   +    g+ r +++  +  l
    KIR64389.1 500 IGL-GGILRTLGKVLVAAL 517
                   865.455555555444444 PP

>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   2.4   4.6e-05      0.14      71     154 ..     130     216 ..     122     225 .. 0.82
   2 !   15.3   9.3   3.8e-06     0.011      24     156 ..     315     455 ..     292     460 .. 0.78
   3 ?   -1.3   1.3      0.51   1.5e+03     107     122 ..     475     490 ..     450     531 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.6e-05
        MatE  71 alrqglilllllsliiallvllfseqilslftqdee...vlelakrylrililgipalalqlvlsgilrgagktkvplyislislll 154
                 ++++ l l+++  +++all+++ +  +  l+ +d+       l+ ++  ++++ i++ +l+ ++s++l++ g + +p+ + ++ +l+
  KIR64389.1 130 YTQRLLTLAVVTLAVAALLAVAGASLLTALYASDKSsgdYQDLVTKLSYLMLPMIFFTGLSALISAVLNTRGHFAAPMWAPILNNLV 216
                 5666777777777777777777777777888777778889**************************************988776644 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.8e-06
        MatE  24 gskalAavsialsilsllfv....fllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqi....lslftqdeevlelakry 114
                 g ++ A+  i ++++ ll++    +++++ tal ++++ a   +++ +++  l +g+ +++++ ++ia+++ +++ ++    +++   ++e + +++  
  KIR64389.1 315 GRENAAGPLIYNNVFLLLMMahgiIAVSIITALMPRMSAAAADGRYADLAADLSRGTRTVTAVLAPIAVCYAVLAGPLsvtlFRYGAFSDENATATSLV 413
                 555555555555555555432222899*****************************************9998887775211145555577799****** PP

        MatE 115 lrililgipalalqlvlsgilrgagktkvplyislislllni 156
                 l++++l ++++a++++++ ++ +  +t++p+ i++  + l+i
  KIR64389.1 414 LLVAALALVPFAVSQLFTFAFYALPDTRTPALINIPVVALRI 455
                 **********************************97776666 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.51
        MatE 107 vlelakrylrililgi 122
                 ++  a  yl ++++++
  KIR64389.1 475 MIGNAVSYLAAAVFSA 490
                 2333333333333333 PP

>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00041       1.2       7      58 ..     131     182 ..     129     192 .. 0.83
   2 ?   -4.7   0.7         6   1.8e+04      25      34 ..     337     346 ..     327     349 .. 0.47
   3 ?   -1.8   0.1       1.3     4e+03      16      38 ..     413     436 ..     409     443 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00041
  Sigma_reg_N   7 akrksilrivlislivlllifvilvvtllylaekegnklrevlelaveitsP 58 
                  ++r ++l +v++++++ll++   +++t+ly ++k++ ++ + +  ++ ++ P
   KIR64389.1 131 TQRLLTLAVVTLAVAALLAVAGASLLTALYASDKSSGDYQDLVTKLSYLMLP 182
                  678899*************************999998887777666666555 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 6
  Sigma_reg_N  25 lifvilvvtl 34 
                   i++++++t+
   KIR64389.1 337 GIIAVSIITA 346
                  4444444444 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.3
  Sigma_reg_N  16 vlislivlllifvil.vvtllyla 38 
                  vl++ +++l+ f+++ ++t++++a
   KIR64389.1 413 VLLVAALALVPFAVSqLFTFAFYA 436
                  555566677777788888888884 PP

>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.7    0.0003       0.9     126     174 ..      31      87 ..       4      91 .. 0.54
   2 ?   -2.7   0.1       1.6   4.8e+03     150     165 ..     246     260 ..     233     261 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0003
     DUF2076 126 aaqpgyaqqqaqpqygqpaaapq.........p...ggGggFLggAlqtAAGVaGGvllan 174
                  +qp+ ++  a+pq +q a+a           +   ++G+gFL++ + tAA   GG+l+++
  KIR64389.1  31 LNQPAIES-TAPPQ-EQVAEASAatnsavmaiGslvSRGTGFLRTLALTAA--LGGALVGD 87 
                 22222222.22222.2222222234555554415679999**********9..88888876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.6
     DUF2076 150 ggGggFLggAlqtAAG 165
                  gGg  Lg A+q AAG
  KIR64389.1 246 IGGGTLLGVAIQ-AAG 260
                 455455555555.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.33s 00:00:01.00 Elapsed: 00:00:00.49
# Mc/sec: 3534.94
//
Query:       KIR64390.1  [L=534]
Description: serine/threonine protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-09   35.1   0.0    2.4e-08   33.7   0.0    1.6  2  Pkinase       Protein kinase domain
    1.1e-05   24.9   0.0    1.6e-05   24.3   0.0    1.1  1  Pkinase_Tyr   Protein tyrosine kinase
     0.0074   16.2   1.9      0.024   14.6   1.7    1.8  1  APH           Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.072   13.2   0.2       0.24   11.5   0.2    1.8  1  F5_F8_type_C  F5/8 type C domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   5.2e-12   2.4e-08      52     141 ..      99     187 ..      86     190 .. 0.92
   2 ?   -2.3   0.0      0.49   2.2e+03     175     198 ..     195     218 ..     189     233 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 5.2e-12
                 HHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-S CS
     Pkinase  52 lkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitD 141
                   ++ hpn+v +y+++ e ++ y+v e+v+g +l +++  +g l++ ++  i + ++++l+ +H+ g++H  + p  ++i+++g + ++D
  KIR64390.1  99 ASRVIHPNLVGVYDAIDEAERAYVVREWVDGRSLREMVA-DGPLDPGRTTAIGNAVASALAAVHATGMVHGNVHPGTVMISDEGRVVLAD 187
                 45667*********************************7.79***************************************999999888 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.49
                 SHHHHHHHHHHHHHHHHHSS-STT CS
     Pkinase 175 skkvDvWslGvilyelltgkppfs 198
                 s++ Dv ++G ily  ltg+ p +
  KIR64390.1 195 SQENDVRAIGGILYFALTGHWPHA 218
                 6788999************99976 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.7e-09   1.6e-05      45     146 ..      89     187 ..      74     200 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.7e-09
                  HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEE CS
  Pkinase_Tyr  45 keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvv 142
                   +e+l+ a   +++ hpn+v ++ ++ ++e+ ++v e+v+g +L++++ +    +l+  +++ +   vA++++ +++  +vH ++    v++s++  v
   KIR64390.1  89 ATEMLQAAVAASRVIHPNLVGVYDAIDEAERAYVVREWVDGRSLREMVADG---PLDPGRTTAIGNAVASALAAVHATGMVHGNVHPGTVMISDEGRV 183
                  57888889999999**********************************987...******************************************** PP

                  EE-S CS
  Pkinase_Tyr 143 kisD 146
                   ++D
   KIR64390.1 184 VLAD 187
                  9999 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   1.7   5.3e-06     0.024      27     110 ..      82     165 ..      55     224 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.3e-06
                 EE-TT.S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS.....HHHHHHHHHHHHHHHHHHCCHHCH.- CS
         APH  27 rnppa.raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr.....klsaaqlpellealgeflaalhqvdp 110
                 r+p +  a e +++ va  r+++ + v v  +++      e+++ +++ e+v+grsl++     +l++  + +++ a++++laa+h++++
  KIR64390.1  82 RYPGGdSATEMLQAAVAASRVIHPNLVGVYDAID------EAERAYVVREWVDGRSLREmvadgPLDPGRTTAIGNAVASALAAVHATGM 165
                 3555545555566666777777777664544444......777789*****************************************954 PP

>> F5_F8_type_C  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   5.5e-05      0.24       9      59 ..     394     452 ..     387     525 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.5e-05
                   STTTGGGGGGSSSTTSSEEESSSSTT........EEEEEEEEEEEEEEEEEEEECSSTT CS
  F5_F8_type_C   9 sgewpaaaaldGnkntaWsssssddk........qwlqvdLgkpkkidgvvtqgrqdgg 59 
                   ++ ++a++++dG+ + +W +++ + +          + +dLg+++++++v++     g+
    KIR64390.1 394 DELGGAEKVIDGDADKGWDTDTYTRSnfgntksgMGVWIDLGEERTVKSVQVSLSATGA 452
                   455699********9999944444444777889999999***********998776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3733.73
//
Query:       KIR64391.1  [L=260]
Description: RNA polymerase sigma factor SigM [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-17   62.5   5.6    3.5e-17   61.9   5.6    1.3  1  Sigma70_r2    Sigma-70 region 2
    2.5e-16   59.1   0.6    5.5e-16   58.0   0.3    1.7  2  Sigma70_r4_2  Sigma-70, region 4
    3.2e-08   33.0   0.7    5.6e-08   32.2   0.1    1.7  2  Sigma70_r4    Sigma-70, region 4
    1.5e-07   31.4   1.1     0.0043   17.0   0.0    2.1  2  Sigma70_ECF   ECF sigma factor
     0.0092   15.5   0.0      0.015   14.8   0.0    1.3  1  GerE          Bacterial regulatory proteins, luxR family
  ------ inclusion threshold ------
      0.024   14.4   3.2       0.03   14.1   0.1    2.4  2  HTH_23        Homeodomain-like domain
      0.054   13.4   0.0       0.11   12.4   0.0    1.5  1  Terminase_5   Putative ATPase subunit of terminase (gpP-like)
        0.1   12.4   0.0       0.28   11.0   0.0    1.7  2  HTH_38        Helix-turn-helix domain
       0.14   12.3   1.6       0.22   11.7   0.2    2.2  2  HTH_28        Helix-turn-helix domain
        5.9    7.9   9.9       0.47   11.3   0.6    3.3  4  HEAT_PBS      PBS lyase HEAT-like repeat


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   5.6   1.9e-20   3.5e-17       1      69 [.      28      94 ..      28      96 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 1.9e-20
                HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSS CS
  Sigma70_r2  1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrr 69
                l++r++++++++a r lg++++a D +Q+a+l ++ra++rf+ + + ++++wl+ri+ na++dr+R+r+
  KIR64391.1 28 LFHRHRDRLWAVALRTLGDREEAADALQDALLSAHRAAARFR-GDS-AVTTWLHRIVVNACLDRIRRRQ 94
                799***************************************.999.9*******************98 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.3   4.1e+03      40      49 ..      71      80 ..      71      82 .. 0.85
   2 !   58.0   0.3   3.1e-19   5.5e-16       4      54 .]     132     182 ..     129     182 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.3
                  HHHHHHHHHH CS
  Sigma70_r4_2 40 egtVksrlsR 49
                  +++V ++l+R
    KIR64391.1 71 DSAVTTWLHR 80
                  58999****9 PP

  == domain 2  score: 58.0 bits;  conditional E-value: 3.1e-19
                   HHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   4 lrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   +r+alaeLp +qr++++l +++g++ +E+A++l++ egtVksr +R+r++L
    KIR64391.1 132 VRQALAELPVEQRAALILVDVQGYPVAEVARILDVAEGTVKSRCARGRARL 182
                   89**********************************************998 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.5   6.2e+03       1       9 [.      40      48 ..      40      50 .. 0.84
   2 !   32.2   0.1   3.1e-11   5.6e-08       1      48 [.     135     182 ..     135     183 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.5
                HHHHS-HHH CS
  Sigma70_r4  1 aLasLpere 9 
                aL++L +re
  KIR64391.1 40 ALRTLGDRE 48
                799999998 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 3.1e-11
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 aLa+Lp ++r  l l+ ++g++ +E++++l++ +++V+++ +r++ +L
  KIR64391.1 135 ALAELPVEQRAALILVDVQGYPVAEVARILDVAEGTVKSRCARGRARL 182
                 8*******************************************9998 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.6   3.7e-05     0.067       6      82 ..      12      90 ..       9      96 .. 0.85
   2 !   17.0   0.0   2.4e-06    0.0043     132     183 ..     135     186 ..     119     188 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.7e-05
  Sigma70_ECF  6 elleqvkdGdaeaaeqllelvydeLrrlagskl.knerreetledtaL.vfeaflrlvdkekfpdlsgrdhlfalaaea 82
                 +ll++   Gd +a  +l+++  d+L  +a + l   e++ + l+d  L ++ a  r  +  ++  +  r  + a + ++
   KIR64391.1 12 DLLRAHVAGDRDAFTELFHRHRDRLWAVALRTLgDREEAADALQDALLsAHRAAARFRGDSAVTTWLHRIVVNACLDRI 90
                 57888889*************************9999****************99988888888777766655555555 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 2.4e-06
  Sigma70_ECF 132 rllsldpeqarlvelrkleGlsveEiAeklgvskrtverrlalaRawlerel 183
                   l++l++eq+  + l  ++G+ v+E+A  l+v++ tv+ r a  Ra+l+ +l
   KIR64391.1 135 ALAELPVEQRAALILVDVQGYPVAEVARILDVAEGTVKSRCARGRARLAVAL 186
                  477899**********************************999999988765 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   8.5e-06     0.015      15      47 ..     152     184 ..     144     185 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.5e-06
                 CTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT- CS
        GerE  15 aeGksnkeIAeelniSekTVkvhksnimkKLnv 47 
                 ++G+ + e+A++l+++e TVk+  ++   +L v
  KIR64391.1 152 VQGYPVAEVARILDVAEGTVKSRCARGRARLAV 184
                 69*******************998887777765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.5      0.48   8.6e+02       9      40 ..      49      80 ..      43      93 .. 0.77
   2 ?   14.1   0.1   1.6e-05      0.03      10      35 ..     146     172 ..     139     182 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.48
      HTH_23  9 rillllae.GlsvreIAreLgvsrrTvyrwlkr 40
                +++ +l++  ls +++A+++ +  + v  wl+r
  KIR64391.1 49 EAADALQDaLLSAHRAAARF-RGDSAVTTWLHR 80
                56666776788888888888.777778888877 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.6e-05
      HTH_23  10 illllae.GlsvreIAreLgvsrrTvy 35 
                 +l l+++ G++v+e+Ar+L+v + Tv 
  KIR64391.1 146 ALILVDVqGYPVAEVARILDVAEGTVK 172
                 45555545*****************96 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.1e-05      0.11      12      38 ..     153     179 ..     142     187 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.1e-05
  Terminase_5  12 qGyrvaeIAeelglkeatVysWkkrde 38 
                  qGy+vae+A+ l++ e tV s + r +
   KIR64391.1 153 QGYPVAEVARILDVAEGTVKSRCARGR 179
                  9******************99888765 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.1   3.8e+03       6      18 ..      43      55 ..      43      60 .. 0.82
   2 ?   11.0   0.0   0.00015      0.28      18      37 ..     152     171 ..     139     178 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.1
      HTH_38  6 sleeReeIerlla 18
                +l +Ree ++ l+
  KIR64391.1 43 TLGDREEAADALQ 55
                7889**9998776 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00015
      HTH_38  18 aeGlslreIArrLgrspsTI 37 
                  +G+ ++e+Ar+L+++ +T+
  KIR64391.1 152 VQGYPVAEVARILDVAEGTV 171
                 49*****************8 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       3.5   6.3e+03      25      35 ..      70      80 ..      60      82 .. 0.72
   2 ?   11.7   0.2   0.00012      0.22       4      35 ..     145     177 ..     142     192 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.5
      HTH_28 25 srrtvyrWikr 35
                + + v  W++r
  KIR64391.1 70 GDSAVTTWLHR 80
                45778888887 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00012
      HTH_28   4 eiiklla.aGhsvreaArelgisrrtvyrWikr 35 
                  ++ l+  +G +v+e+Ar+l + + tv++ + r
  KIR64391.1 145 AALILVDvQGYPVAEVARILDVAEGTVKSRCAR 177
                 5677788899*****************999887 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6   0.00026      0.47       6      26 ..      38      59 ..      38      60 .. 0.91
   2 ?   -3.4   0.0        10   1.8e+04       8      21 ..      77      90 ..      73      92 .. 0.60
   3 ?   -2.4   0.1       6.6   1.2e+04       8      19 ..     135     147 ..     134     152 .. 0.56
   4 ?    1.2   0.5      0.47   8.4e+02       2      14 ..     179     191 ..     179     206 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00026
                HHHHHHCTS.GGGHHHHHHHCT CS
    HEAT_PBS  6 akaLgqlgd.eeaipaLleaLq 26
                a aL +lgd eea++aL+ aL 
  KIR64391.1 38 AVALRTLGDrEEAADALQDALL 59
                569*****************95 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 10
                HHHHCTSGGGHHHH CS
    HEAT_PBS  8 aLgqlgdeeaipaL 21
                +L ++   ++++++
  KIR64391.1 77 WLHRIVVNACLDRI 90
                55555556777776 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 6.6
                 HHHHCTS.GGGHH CS
    HEAT_PBS   8 aLgqlgd.eeaip 19 
                 aL++l   ++a+ 
  KIR64391.1 135 ALAELPVeQRAAL 147
                 6666666444444 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.47
                 HHHHHHHHHHCTS CS
    HEAT_PBS   2 RraAakaLgqlgd 14 
                 R++ a aLg l++
  KIR64391.1 179 RARLAVALGHLRT 191
                 788999*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2057.40
//
Query:       KIR64392.1  [L=323]
Description: hypothetical protein TK50_01500 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2329.03
//
Query:       KIR64393.1  [L=317]
Description: thioredoxin reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-51  173.4   2.3    7.1e-51  173.2   2.3    1.0  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    2.7e-21   76.1   1.1    6.9e-16   58.4   0.0    2.2  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    3.3e-20   72.4   4.8      2e-18   66.7   1.2    3.1  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    4.6e-08   32.6  10.5    0.00011   21.4   0.4    4.4  5  FAD_binding_2   FAD binding domain
    3.1e-05   24.1   1.4    0.00092   19.4   0.0    2.7  3  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    3.8e-05   22.6   0.6     0.0061   15.3   0.2    3.6  4  HI0933_like     HI0933-like protein
    5.4e-05   22.4   5.7     0.0011   18.1   0.1    4.0  5  GIDA            Glucose inhibited division protein A
    5.5e-05   22.7   5.6    0.00015   21.3   0.6    2.7  2  FAD_oxidored    FAD dependent oxidoreductase
    6.2e-05   22.3   2.5     0.0021   17.4   0.1    2.9  3  Thi4            Thi4 family
    0.00012   21.3   0.4     0.0073   15.5   0.0    2.9  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
    0.00017   21.3  10.7      0.012   15.3   0.4    3.8  3  DAO             FAD dependent oxidoreductase
    0.00057   20.3   0.2     0.0053   17.2   0.1    2.2  2  NAD_binding_7   Putative NAD(P)-binding
  ------ inclusion threshold ------
      0.036   12.9   6.3       0.48    9.2   0.3    3.5  4  Trp_halogenase  Tryptophan halogenase
      0.064   11.7   0.0      0.088   11.2   0.0    1.2  1  FMO-like        Flavin-binding monooxygenase-like
      0.075   12.3   0.7        2.9    7.0   0.2    2.5  2  FAD_binding_3   FAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.2   2.3   5.9e-54   7.1e-51       2     294 .]       6     301 ..       5     301 .. 0.87

  Alignments for each domain:
  == domain 1  score: 173.2 bits;  conditional E-value: 5.9e-54
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.........HHHHCHHHHCCCCHCCTCEEEEESC.EEEEETE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias.........evvkklnqgielllgeevvkidpgk.kkvklek 89 
                  ++++iG+GpAG++aa ++a+a++k +++  eg   +g  + ++++++++++a+ ++         ++ +++  g e+l++  v++++    + v   +
   KIR64393.1   6 NLIIIGSGPAGYTAAVYAARANLKPLVI--EGVQSGGALMTTTEVENFPGFADGILgpelmdnmrKQAERF--GAEFLTD-DVTRVELTDtGSVGSDA 98 
                  689*************************..99999999999*****************7776554333333..3445555.66666644425555544 PP

                  EEC...TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HH CS
                  xxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  90 kke...gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldke 184
                    +     e+ + +++++l tGs  r lg+pG++e+ g++v+++++++++   ++   ivvvGgG  ++E A++l+++++ vt++++rd +      +
   KIR64393.1  99 V-StvwVGETAYRAKAVILSTGSAWRPLGVPGEQEYLGHGVSSCATCDGFFFRNQH--IVVVGGGDSAMEEASFLTRFAESVTIIHRRDSFR-----A 188
                  4.2699777899**************************************999886..*********************************7.....4 PP

                  HHHHHHHHHHHTTEEEEESCEEEEEEETTE.....EEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTS.BESSTTEEE-G CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2 185 lsaaleealekeGvevklgtsvkeidgnge.....kle.vvledgeeidadlvvvavGvrpstelleeklglelderggivvdefl.rtnvpgiyaiG 275
                   + ++e+al +e+++v ++++v+e+ g++      +++ v++++ +++d+  v+va+G  p++el+  + ++eld+ g+++v   + rt+vpg++a+G
   KIR64393.1 189 SKIMAERALGNEKIKVEWNSVVEEVLGDDGkvtgvRVRnVHTGEAKVLDVTGVFVAIGHDPRSELF--RGQVELDDEGYVKVQAPStRTSVPGVFAAG 284
                  445567788888******************888665559**************************6..99**********99987769********** PP

                  GGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 276 DvaggkggpelaqaAvqqG 294
                  Dv+  ++++++a +A  +G
   KIR64393.1 285 DVV--DHTYRQAITAAGTG 301
                  ***..99999999998766 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.3   3.1e-06    0.0037       1      33 [.       8      39 ..       8      50 .. 0.88
   2 !   58.4   0.0   5.8e-19   6.9e-16     119     305 .]     105     284 ..      78     284 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.1e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnig 33
                 iIiG GPaG +aa+ + +a+l + l++E  + g
   KIR64393.1  8 IIIGSGPAGYTAAVYAARANL-KPLVIEGVQSG 39
                 8********************.579**987665 PP

  == domain 2  score: 58.4 bits;  conditional E-value: 5.8e-19
  Pyr_redox_3 119 sketyeAkkviiAtGefdkPnklnipGeek.lvkhyskvkefh..kyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpd 213
                   +  y+Ak vi++tG   +P  l++pGe++ l    s    ++   +++q++vV+Gg++Sa++ A  l r   +Vt+++r+++ ++++         +
   KIR64393.1 105 GETAYRAKAVILSTGSAWRP--LGVPGEQEyLGHGVSSCATCDgfFFRNQHIVVVGGGDSAMEEASFLTRFAESVTIIHRRDSFRASK---------I 191
                  5678***********96666..69****984333334444444005679********************************9766653.........3 PP

  Pyr_redox_3 214 ienrleelvkeekikvlfnaevkeikekeeey......kvktedgkkvevkddvvlatGykpdlsflkkslfeldedgrpvlteeteetnvpglflaG 305
                  + +r    + +ekikv+ n+ v+e+  ++ ++      +v+t ++k ++  + v++a+G +p  ++++  ++eld++g+++++     t vpg+f aG
   KIR64393.1 192 MAERA---LGNEKIKVEWNSVVEEVLGDDGKVtgvrvrNVHTGEAKVLD-VTGVFVAIGHDPRSELFR-GQVELDDEGYVKVQAPSTRTSVPGVFAAG 284
                  33332...23467888888888888766665532222346677755554.5888999**********9.9**************************99 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.036        43       2      59 ..       7      80 ..       6      96 .. 0.58
   2 !   66.7   1.2   1.7e-21     2e-18       1      79 [.     153     226 ..     153     231 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.036
                EEEECSSHHHHHHHHHHHHTT...............SEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEEC CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelg...............kkVtvversdkll.rllDeeaskilqeklekngievll 59
                ++++G+G  g  +A ++a+ +                 +t ve+ + +    l++e+ ++++++ e+ g e+l+
  KIR64393.1  7 LIIIGSGPAGYTAAVYAARANlkplviegvqsggalMTTTEVENFPGFAdGILGPELMDNMRKQAERFGAEFLT 80
                67888888888888888666622333333333333334445555555555555555555555555555555555 PP

  == domain 2  score: 66.7 bits;  conditional E-value: 1.7e-21
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT.TEEEECSEEEEEEEEETTSEEEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekn.gievllntkveeiegsedgvesvklk 79 
                 ++vvvGgG++++E+A++l++++ +Vt+++r+d ++      aski++e+   n +i+v +n++vee+ g++ +v++v+++
  KIR64393.1 153 HIVVVGGGDSAMEEASFLTRFAESVTIIHRRDSFR------ASKIMAERALGNeKIKVEWNSVVEEVLGDDGKVTGVRVR 226
                 89*********************************......*****88885555*****************99*****97 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.4   9.1e-08   0.00011       2      36 ..       7      40 ..       6      46 .. 0.90
   2 !    5.6   0.1    0.0061       7.3     140     224 ..      60     143 ..      52     172 .. 0.67
   3 ?   -0.2   0.0      0.35   4.2e+02       2      36 ..     154     188 ..     153     194 .. 0.86
   4 !    6.7   0.2    0.0028       3.4     147     200 ..     192     246 ..     186     259 .. 0.81
   5 ?    2.4   0.0     0.054        64     387     410 ..     272     295 ..     256     302 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.1e-08
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36
                   +i+iGsG AG++AA+ aa+a+lk +v+e +q+ gg
     KIR64393.1  7 LIIIGSGPAGYTAAVYAARANLKPLVIEGVQS-GG 40
                   69***************************998.55 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0061
                    HHHHHHHHHHHHHTCTEEEEES.EEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG..........GSSSBSSGTT CS
  FAD_binding_2 140 ghallarlvesarkagvdfqer.teadeLivedgrvtGavvenpesgrevrirakavvlatgGfgrallkellgaaaeaettnapa 224
                    g++l+  + ++a++ g +f++     +eL +++g v  + v+     +e+++rakav+l tg + r l  +  +++  + +++ ++
     KIR64393.1  60 GPELMDNMRKQAERFGAEFLTDdVTRVEL-TDTGSVGSDAVS-TVWVGETAYRAKAVILSTGSAWRPLGVPGEQEYLGHGVSSCAT 143
                    88899999999999998888751444455.455544444444.33445899***********887733333334455555555555 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.35
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36 
                    ++V+G+G + +  A  +++   +v+++   ++f+ 
     KIR64393.1 154 IVVVGGGDSAMEEASFLTRFAESVTIIHRRDSFRA 188
                    89*********999999999999999998888775 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0028
                    HHHHHHTCT.EEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE--- CS
  FAD_binding_2 147 lvesarkag.vdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatg 200
                    ++e+a+ ++ +++  +  ++e++ +dg+vtG+ v+n ++g+   +  ++v +a g
     KIR64393.1 192 MAERALGNEkIKVEWNSVVEEVLGDDGKVTGVRVRNVHTGEAKVLDVTGVFVAIG 246
                    6777777667999999*******************99999987766667777766 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.054
                    TEEESSBTEEE-STCEESSSSTTS CS
  FAD_binding_2 387 adgqpipGLYAaGevaaggvhgan 410
                    ++ + +pG +AaG v    +  a 
     KIR64393.1 272 STRTSVPGVFAAGDVVDHTYRQAI 295
                    56779*********9976666555 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   7.7e-07   0.00092       1      42 [.       9      50 ..       9      72 .. 0.89
   2 ?    3.1   0.0     0.093   1.1e+02       1      30 [.     156     185 ..     156     202 .. 0.91
   3 ?   -3.3   0.2       9.3   1.1e+04       7      18 ..     298     309 ..     297     312 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.7e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETT CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpg 42
                   I+G+G +G +aA ++a+a+++ l++e  ++ G  +++ ev++
     KIR64393.1  9 IIGSGPAGYTAAVYAARANLKPLVIEGVQSGGALMTTTEVEN 50
                   9*************************9999999999998844 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.093
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdr 30 
                    +vG+G s++  A++L++   +v+++ +rd+
     KIR64393.1 156 VVGGGDSAMEEASFLTRFAESVTIIHRRDS 185
                    8****************8889999988886 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 9.3
                    HHHHHHHHHHCC CS
  NAD_binding_8   7 sGlvaAylLaka 18 
                    +G  +A++L  +
     KIR64393.1 298 AGTGCAAALDAE 309
                    788888888765 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   5.1e-06    0.0061       2      36 ..       6      40 ..       5      46 .. 0.89
   2 ?   -1.2   0.0      0.54   6.5e+02     140     165 ..      97     121 ..      62     130 .. 0.67
   3 ?    1.8   0.0     0.066        78       2      35 ..     153     186 ..     152     199 .. 0.87
   4 ?    0.4   0.0      0.18   2.1e+02     374     387 ..     276     289 ..     267     292 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.1e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 ++i+iG G+AG  aA+ aa+++ + l++e  ++ g
   KIR64393.1  6 NLIIIGSGPAGYTAAVYAARANLKPLVIEGVQSGG 40
                 689**************************987655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.54
                  TE.EEEEE.TTEEEEESEEEE----S CS
  HI0933_like 140 dgkfrvktkseeeleadklvlAtGGl 165
                  d + +v + +e++++a++++l+tG++
   KIR64393.1  97 DAVSTVWV-GETAYRAKAVILSTGSA 121
                  33334444.899999*******9875 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.066
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakkl 35 
                  +++v+GgG + +  A  + +  ++V+++ + +++
   KIR64393.1 153 HIVVVGGGDSAMEEASFLTRFAESVTIIHRRDSF 186
                  69*************************9988776 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.18
                  TSTTEEE-GGGBSE CS
  HI0933_like 374 kvpgLffaGEvlDv 387
                  +vpg+f aG v+D 
   KIR64393.1 276 SVPGVFAAGDVVDH 289
                  79**********96 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   9.2e-07    0.0011       2      56 ..       7      63 ..       6      78 .. 0.87
   2 ?    1.3   0.0      0.12   1.4e+02     131     151 ..     101     121 ..      77     143 .. 0.72
   3 ?    1.0   0.0      0.15   1.8e+02       2      32 ..     154     183 ..     153     197 .. 0.84
   4 ?   -1.0   0.0      0.62   7.4e+02      97     142 ..     188     234 ..     178     247 .. 0.72
   5 ?    0.9   0.0      0.16   1.9e+02     354     388 ..     276     312 ..     266     316 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 9.2e-07
                EEEE-SSHHHHHHHHHHHHTT--EEEE..ES-GGGTT--SSSSEEE-TTHHHHHHHH CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLi..thkldtiaelsCnpsiggiakgllvrEi 56
                +i+iG G AG+ AA+ aar+++k l i  +++ + +++    +++ g a g+l  E+
  KIR64393.1  7 LIIIGSGPAGYTAAVYAARANLKPLVIegVQSGGALMTTTEVENFPGFADGILGPEL 63
                69***********************99999999999999999999999999998775 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.12
                 EEETTS-EEEECEEEE--TT- CS
        GIDA 131 vvtedgetikakavviatGtf 151
                  v   +++++akav+++tG+ 
  KIR64393.1 101 TVWVGETAYRAKAVILSTGSA 121
                 45567889***********94 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.15
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES-G CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLithkl 32 
                 ++V+GgG + +e A  + r   +v++i h+ 
  KIR64393.1 154 IVVVGGGDSAMEEASFLTRFAESVTII-HRR 183
                 89**********999999999999988.444 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.62
                 HHHHHHHHHHTSTTEEEE.ES-EEEEEECTTEEEEEEETTS-EEEEC CS
        GIDA  97 yskevteklenepnleii.eeeveeliveekkvkgvvtedgetikak 142
                  sk + e+   ++++++  +  vee++ +++kv+gv+ ++ +t +ak
  KIR64393.1 188 ASKIMAERALGNEKIKVEwNSVVEEVLGDDGKVTGVRVRNVHTGEAK 234
                 46677777777899999624567889899999999999887766555 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.16
                 SSBTEEE-CGGGTB-SHHH...HHHHHHHHHHHHHHHH CS
        GIDA 354 kvkgLflAGqinGteGYeE...aaaqGllAGinaarka 388
                 +v+g+f+AG++   + Y     aa++G+ A++ a r +
  KIR64393.1 276 SVPGVFAAGDVVDHT-YRQaitAAGTGCAAALDAERFI 312
                 4899******99988.7651115669999999998866 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.6   1.2e-07   0.00015       2      50 ..       7      55 ..       6     121 .. 0.83
   2 ?    3.6   0.1     0.029        34      89     136 ..     189     233 ..     168     252 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.2e-07
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignk 50
                  ++++G+gpaG++AA+ Aara  k l++e  +  G l+t   v ++ g+ 
    KIR64393.1  7 LIIIGSGPAGYTAAVYAARANLKPLVIEGVQSGGALMTTTEVENFPGFA 55
                  69**************************999999999998888887754 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.029
  FAD_oxidored  89 akavleemlaeagvtvllntrlvevekegkriesvtveskegrktirA 136
                    k ++e  l +++++v  n++++ev  +++++++v+v++     t +A
    KIR64393.1 189 SKIMAERALGNEKIKVEWNSVVEEVLGDDGKVTGVRVRNVH---TGEA 233
                   566777888788****************99*******8844...3333 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.7e-06    0.0021      19      55 ..       6      40 ..       3      47 .. 0.85
   2 ?    2.6   0.0     0.055        66      17      50 ..     151     183 ..     141     189 .. 0.82
   3 ?    2.4   0.3     0.066        79      21      97 ..     155     186 ..     152     249 .. 0.54

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.7e-06
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailersvspGG 55
                +++i+G+G++G taa y a++ +lk +++e   s GG
  KIR64393.1  6 NLIIIGSGPAGYTAAVYAARA-NLKPLVIEGVQS-GG 40
                689*****************9.*******97444.44 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.055
                 EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4  17 esDvvivGaGssGLtaayylakkpdlkvailers 50 
                 ++ +v+vG+G s +  a  l++     v+i+ r+
  KIR64393.1 151 NQHIVVVGGGDSAMEEASFLTRF-AESVTIIHRR 183
                 6789*************999988.5567777665 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.066
                 EEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTBSEEEEETTTHHHHHHTT---EEESSEEEESEHH CS
        Thi4  21 vivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlfsaivvrkpakelLdelgikyedegdyvvvkdaa 97 
                 v+vG+G s +  a  l++     v+i+ r                                            +d+ 
  KIR64393.1 155 VVVGGGDSAMEEASFLTRF-AESVTIIHR--------------------------------------------RDSF 186
                 4555555555444444444.233333333............................................3333 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.24   2.9e+02       3      34 ..       5      34 ..       3      39 .. 0.78
   2 !   15.5   0.0   6.1e-06    0.0073     144     231 ..     106     189 ..      64     203 .. 0.72
   3 ?    1.7   0.0     0.098   1.2e+02     113     159 ..     204     248 ..     193     251 .. 0.51

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.24
  K_oxygenase  3 lDligiGiGpsnLsLailleevkkelkalfle 34
                  +li+iG Gp+  + a+ ++ ++  lk l++e
   KIR64393.1  5 RNLIIIGSGPAGYTAAVYAARAN--LKPLVIE 34
                 689********999888887776..6666665 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 6.1e-06
  K_oxygenase 144 eeelearnlvlgvGtepkiPevleklegkervvHsseylerkee.llakkriaVvGsGqSaaeifedllrrqkkvelklvtrsealepl 231
                  e+ ++a++++l++G+    P  +     +e + H  +   + +    ++++i+VvG+G Sa e +  l+r ++  +++++ r+++++++
   KIR64393.1 106 ETAYRAKAVILSTGSA-WRPLGVPGE--QEYLGHGVSSCATCDGfFFRNQHIVVVGGGDSAMEEASFLTRFAE--SVTIIHRRDSFRAS 189
                  6789999999999964.345555542..3555565444444433377899*************9988877666..9999****999875 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.098
  K_oxygenase 113 vrfgeeveevepdeeeeeelltveskd.aegeeeelearnlvlgvGte 159
                  v++++ veev  d+ +   +  v++++ ++ge++ l    + +++G  
   KIR64393.1 204 VEWNSVVEEVLGDDGK---VTGVRVRNvHTGEAKVLDVTGVFVAIGHD 248
                  5555555555555542...23333333355566666666666666655 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.5    0.0018       2.1       2      27 ..       7      34 ..       6      48 .. 0.84
   2 !   15.3   0.4   9.6e-06     0.012     147     205 ..      62     123 ..      52     185 .. 0.70
   3 ?    2.6   0.1     0.068        81     152     207 ..     192     253 ..     182     294 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0018
                EEEECTSHHHHHHHHHHHHTT..EEEEE CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtlle 27
                ++iiG+G +G ++A ++ar++   +++e
  KIR64393.1  7 LIIIGSGPAGYTAAVYAARANlkPLVIE 34
                69***************99977777777 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 9.6e-06
                 HHHHHHHHHHHHTT-EEEESECEEEEEEEE......TCEEEEEEECTEEE.EEEEEEEE--GGGHH CS
         DAO 147 kltaalaraaealGveilegtevtgleeed......gkvwgverttpgen.daadavVnaaGawsd 205
                 +l+  ++++ae+ G+e+l+   vt++e +d      + v++v +   ge+  +a+av++++G   +
  KIR64393.1  62 ELMDNMRKQAERFGAEFLTD-DVTRVELTDtgsvgsDAVSTVWV---GETaYRAKAVILSTGSAWR 123
                 59999***************.*****998876665555566642...555445689******6533 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.068
                 HHHHHHHTT.-EEEESECEEEEEEEETCEEEEE..EECT.EEEEEEEE..EEE--GGGHH.HH CS
         DAO 152 laraaealG.veilegtevtgleeedgkvwgve..rttp.gendaada..vVnaaGawsd.ll 207
                 +a++a  +  +++  ++ v+++  +dgkv+gv+  +  + ge +  d   v +a G+  + +l
  KIR64393.1 192 MAERALGNEkIKVEWNSVVEEVLGDDGKVTGVRvrN-VHtGEAKVLDVtgVFVAIGHDPRsEL 253
                 555555444478888888999867889*****9852.33355333333668888888766533 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.52   6.2e+02       8      36 ..       5      33 ..       3      88 .. 0.83
   2 !   17.2   0.1   4.5e-06    0.0053       5      46 ..     149     200 ..     147     269 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.52
  NAD_binding_7  8 kkvlvvGgGevAarkvrklleagakvtvv 36
                   ++ +++G G+ +++ +   ++a+ k  v+
     KIR64393.1  5 RNLIIIGSGPAGYTAAVYAARANLKPLVI 33
                   6789********99888888888777776 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 4.5e-06
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapevkeele...........e 46 
                    +++++++vvGgG+ A++ ++ l ++   vt++  +  ++             e
     KIR64393.1 149 FRNQHIVVVGGGDSAMEEASFLTRFAESVTIIHRRD-SFRAskimaeralgnE 200
                    689****************************99884.3322223333333332 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.3    0.0004      0.48       2      31 ..       7      36 ..       6      42 .. 0.81
   2 ?    1.6   0.0     0.083        99     159     188 ..      66      95 ..      62     115 .. 0.90
   3 ?    3.2   0.0     0.027        33       2      32 ..     154     181 ..     153     189 .. 0.83
   4 ?   -1.3   0.0       0.6   7.2e+02     159     201 ..     191     234 ..     181     241 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0004
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEE CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlv 31
                    ++i+G G+aG++aA + a+a  + l ++ v
      KIR64393.1  7 LIIIGSGPAGYTAAVYAARANLKPLVIEGV 36
                    79***************9998555666555 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.083
                     HHHHHHHHCT-EEEE--EEEEEE-TTS-EE CS
  Trp_halogenase 159 fLrrvaearGvtrvegkvvevqldedgrve 188
                      +r+ ae+ G + + ++v+ v+l ++g+v 
      KIR64393.1  66 NMRKQAERFGAEFLTDDVTRVELTDTGSVG 95 
                     589***********************9996 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.027
                     EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE CS
  Trp_halogenase   2 ivivGGGtaGwlaAaalakalkgklevtlve 32 
                     iv+vGGG ++   A+ l +  +   +vt++ 
      KIR64393.1 154 IVVVGGGDSAMEEASFLTRFAE---SVTIIH 181
                     9*****************9993...466665 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.6
                     HHHHHHHHC.T-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-S CS
  Trp_halogenase 159 fLrrvaear.Gvtrvegkvvevqldedgrveslrledgrevead 201
                     ++ + a  +  +++    vve +l +dg+v+++r+ + ++ ea 
      KIR64393.1 191 IMAERALGNeKIKVEWNSVVEEVLGDDGKVTGVRVRNVHTGEAK 234
                     55555555446777788899999999******999887766554 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.4e-05     0.088     159     225 ..     127     193 ..      60     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.4e-05
    FMO-like 159 fpGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggdiavelsrtaeqvllstrsGswvlsrvsd 225
                  pG +++ G+ + s    +   f+++ ++v+G G+s+ + a+ l+r ae v +  r+ s+  s+++ 
  KIR64393.1 127 VPGEQEYLGHGVSSCATCDGFFFRNQHIVVVGGGDSAMEEASFLTRFAESVTIIHRRDSFRASKIMA 193
                 6888888888888888888889***********************************9999888875 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.2    0.0025       2.9       5      31 ..       8      34 ..       4      39 .. 0.80
   2 ?    2.9   0.0     0.044        52       4      37 ..     154     187 ..     151     206 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0025
                   EEE--SHHHHHHHHHHHHTTHHEEEEE CS
  FAD_binding_3  5 lIVGaGpaGlmlallLseaGvrvvlve 31
                   +I+G+GpaG ++a   ++a  + +++e
     KIR64393.1  8 IIIGSGPAGYTAAVYAARANLKPLVIE 34
                   7************98777766666665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.044
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSC CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrsttv 37 
                    +++VG+G + +  a++L++   +v+++ +r++  
     KIR64393.1 154 IVVVGGGDSAMEEASFLTRFAESVTIIHRRDSFR 187
                    78******************999****9987643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 2135.42
//
Query:       KIR64394.1  [L=107]
Description: thioredoxin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-31  108.7   0.0    1.4e-31  108.5   0.0    1.0  1  Thioredoxin    Thioredoxin
    6.9e-10   39.1   0.0    1.8e-08   34.6   0.0    2.0  2  Thioredoxin_8  Thioredoxin-like
      3e-09   37.3   0.1    3.4e-08   33.9   0.1    2.0  1  Thioredoxin_2  Thioredoxin-like domain
    6.5e-06   26.1   0.0    8.7e-06   25.7   0.0    1.2  1  Thioredoxin_3  Thioredoxin domain
    1.3e-05   24.8   0.0    1.9e-05   24.3   0.0    1.2  1  KaiB           KaiB domain
    6.3e-05   22.9   0.0    0.00017   21.5   0.0    1.6  1  AhpC-TSA       AhpC/TSA family
    6.6e-05   22.7   0.0    7.3e-05   22.5   0.0    1.2  1  Redoxin        Redoxin
    7.1e-05   22.9   0.0    0.00012   22.2   0.0    1.3  1  Thioredoxin_7  Thioredoxin-like
     0.0017   18.2   0.0     0.0018   18.0   0.0    1.1  1  Thioredoxin_9  Thioredoxin
     0.0046   17.1   0.0     0.0072   16.5   0.0    1.3  1  Glutaredoxin   Glutaredoxin
     0.0052   17.2   0.0     0.0066   16.8   0.0    1.2  1  DUF836         Glutaredoxin-like domain (DUF836)
  ------ inclusion threshold ------
      0.042   13.7   0.0      0.048   13.5   0.0    1.1  1  TraF           F plasmid transfer operon protein
      0.066   12.5   0.0      0.079   12.3   0.0    1.1  1  OST3_OST6      OST3 / OST6 family, transporter family
      0.085   12.8   0.0       0.11   12.5   0.0    1.2  1  HyaE           Hydrogenase-1 expression protein HyaE


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.0   1.1e-34   1.4e-31       3     102 ..       5     104 ..       3     105 .. 0.97

  Alignments for each domain:
  == domain 1  score: 108.5 bits;  conditional E-value: 1.1e-34
                  EESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHH CS
  Thioredoxin   3 lvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaaf 100
                  + +t+++F  +v k++k+vlv+F+A+wCg+C++++P le++a e+ d+v ++k+++den+++a+ y v ++Ptl +fkng+ v+++ ga++k +l++ 
   KIR64394.1   5 KAVTDASFAVDVLKSDKPVLVDFWAEWCGPCRKVSPLLEEIAGEMGDQVSIVKLNIDENPETARAYRVMSVPTLTVFKNGEPVQSIAGAKPKGELVKL 102
                  6799********************************************************************************************99 PP

                  HH CS
  Thioredoxin 101 lk 102
                  ++
   KIR64394.1 103 IQ 104
                  87 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   1.4e-11   1.8e-08       2      53 ..      21      70 ..      20      71 .. 0.94
   2 ?    4.8   0.0     0.028        36      75      91 ..      67      83 ..      64      87 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 1.4e-11
                   SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHH CS
  Thioredoxin_8  2 kvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefeky 53
                   k vl+ f+a+wc pc+++ p l e+  ++   ++v iv +++d++ e  ++y
     KIR64394.1 21 KPVLVDFWAEWCGPCRKVSPLLEEIAGEMG--DQVSIVKLNIDENPETARAY 70
                   89***************************9..************99887776 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.028
                   TT-S--TT-SEEEEE-T CS
  Thioredoxin_8 75 kkkynvkaiPtlvvldk 91
                   ++ y+v+++Ptl v ++
     KIR64394.1 67 ARAYRVMSVPTLTVFKN 83
                   689*********99875 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.1   2.7e-11   3.4e-08       3     108 ..      18     102 ..      16     103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 2.7e-11
  Thioredoxin_2   3 gngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPt.ivfldgkeivarlp 97 
                    ++ kpvlv+f++++C+ C+k    l+e+           ++++++++  +i+ ++e              ar+y+v ++Pt +vf +g+ +v  + 
     KIR64394.1  18 KSDKPVLVDFWAEWCGPCRKVSPLLEEI---AGE-----MGDQVSIVKLNIDENPET-------------ARAYRVMSVPTlTVFKNGE-PVQSIA 91 
                    678*****************88877777...555.....889989999999888887.............6**********88899999.999*** PP

  Thioredoxin_2  98 Gyvpaeeleal 108
                    G+ p+ el +l
     KIR64394.1  92 GAKPKGELVKL 102
                    *****999887 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   6.8e-09   8.7e-06      10      72 ..      32     100 ..      23     104 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 6.8e-09
                    STTCHHHHHHHHHHCHCCTCECEEECC..TTHHHH.HHCT-SSSSEE..ECTTCEE..EESS---CCHHH CS
  Thioredoxin_3  10 CakCpklekavkeaaaekgikaevekv..tdfeei.ekygVmsvPal..vidgkvv..vsGkvpseeeir 72 
                    C  C+k++ +++e+a e+g +++++k    +++e    y+VmsvP+l  + +g+ v  ++G+ p++e + 
     KIR64394.1  32 CGPCRKVSPLLEEIAGEMGDQVSIVKLniDENPETaRAYRVMSVPTLtvFKNGEPVqsIAGAKPKGE-LV 100
                    999***************866666554448888888**********964457875523678555554.33 PP

>> KaiB  KaiB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.5e-08   1.9e-05      22      78 ..      46     102 ..      36     105 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.5e-08
                 CCCHCTTTEEEEEEETTTSHCHHCCTCEESCCCCCC.CCSCCHCCCCCCHHHCCHHCC CS
        KaiB  22 eeedlgfqyeLqvvdvleqPelaeedrlvatPaLik.lsPePkqrlaGdlilqqlklw 78 
                 +  ++g q+++  +++ e+Pe a+ +r++ +P+L    + eP+q +aG + + +l+++
  KIR64394.1  46 AG-EMGDQVSIVKLNIDENPETARAYRVMSVPTLTVfKNGEPVQSIAGAKPKGELVKL 102
                 44.48999999999********************651679********9988888775 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.3e-07   0.00017      23      74 ..      17      67 ..       4      83 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.3e-07
                H.TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHH CS
    AhpC-TSA 23 y.kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshk 74
                + ++kpv++ f+++ wc +C++  p l++ + e+    v ++ +++d+  + +
  KIR64394.1 17 LkSDKPVLVDFWAE-WCGPCRKVSPLLEEIAGEMG-DQVSIVKLNIDENPETA 67
                3467**********.*******************9.56999999998766444 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   5.7e-08   7.3e-05      27      76 ..      19      69 ..       4      96 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 5.7e-08
                TTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHH...H CS
     Redoxin 27 kgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndaf...v 76
                 +k+v+v f++  +c++C++  p le++a + +   v++v +++d+++    +
  KIR64394.1 19 SDKPVLVDFWAE-WCGPCRKVSPLLEEIAGE-MGDQVSIVKLNIDENPEtarA 69
                5799********.***************999.777799999999999875443 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   9.1e-08   0.00012      15      81 ..      18      81 ..      11      83 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 9.1e-08
                   HHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT---.SSEEEEE CS
  Thioredoxin_7 15 ergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanileldeqg.vPvvafl 81
                   ++ kpvlv+f a+wc++C+++   +++     + + +++  ++++++e+ +   + ++   vP++ ++
     KIR64394.1 18 KSDKPVLVDFWAEWCGPCRKVSPLLEEI--AGE-MGDQVSIVKLNIDENPETA-RAYRVMsVPTLTVF 81
                   789******************9988765..777.9999999999999988877.43443359988877 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.4e-06    0.0018      49     107 ..      28      84 ..       9     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.4e-06
                    --TT-HHHHHHHHHHHHHH.HH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT CS
  Thioredoxin_9  49 tedwCgDaavnvPvlakia.elnpnievkillrdenlelmdqyltngaraiPtliildee 107
                     ++wCg ++ + P l++ia e  +++++  l  den+e+ + y+     ++Ptl +++++
     KIR64394.1  28 WAEWCGPCRKVSPLLEEIAgEMGDQVSIVKLNIDENPETARAYRV---MSVPTLTVFKNG 84 
                    579****************8888999**9**************66...899998777654 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.6e-06    0.0072       6      55 ..      29      80 ..      23      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.6e-06
                  STSSHHHHHHHHHHHHTT......GGEEEEEGCCSHHHHHHHHHHHTSSSSSEEEE CS
  Glutaredoxin  6 kptCpyCkkakrlLkelg......vkfeeidvdkdeeireelkelsgvrtvPqvfi 55
                    +C+ C+k+  lL+e        v++   ++d+++e   +      v++vP++ +
    KIR64394.1 29 AEWCGPCRKVSPLLEEIAgemgdqVSIVKLNIDENPETARAY----RVMSVPTLTV 80
                  589***********888878889999**********999999....6677776544 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.1e-06    0.0066       8      55 ..      30      80 ..      27     103 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.1e-06
                TT-HHHHHHHHHHHHHCCCTT..EEEEEEETTT-CCCHCCCCTT.TTEEEE CS
      DUF836  8 pgChlCeqakekLkelkleeg..leleviDIakdeeleakYgle.ipvlal 55
                + C+ C +++ +L+e++ e g  +++++ +I++++e  ++Y ++ +p l +
  KIR64394.1 30 EWCGPCRKVSPLLEEIAGEMGdqVSIVKLNIDENPETARAYRVMsVPTLTV 80
                56*************77666667******************9752566655 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.8e-05     0.048     132     202 ..      23      84 ..      11      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.8e-05
        TraF 132 gLlfFyrgkcpyceaqapilqafadkyglevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpk 202
                  L+ F ++ c+ c++ +p l+++a ++g +v +V+++   +pe++          ++ v ++P+l +++  
  KIR64394.1  23 VLVDFWAEWCGPCRKVSPLLEEIAGEMGDQVSIVKLNIDENPETAR---------AYRVMSVPTLTVFKNG 84 
                 567799999*************************999999988888.........9999999999988776 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.2e-05     0.079      46     105 ..      32      84 ..      27     102 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.2e-05
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppk 105
                 C +Cr++ p +e +a  +  +       +  +k+++de++++ + +++ s+P l +f+  
  KIR64394.1  32 CGPCRKVSPLLEEIAGEMGDQ-------VSIVKLNIDENPETARAYRVMSVPTLTVFKNG 84 
                 888999999888888888777.......89***************************983 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.6e-05      0.11      50     104 ..      42      95 ..      34      99 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.6e-05
                 HHHHHCT-TTS-EEEEEETHHHHHHHHHCCT-TSSSEEEEEETTEEEEEEESSST CS
        HyaE  50 lpEllkaFpnalraavvadreqeealaerfgvlktPsllflrdgeylgvlakird 104
                 l E+  +  ++  ++ ++  +++ + a+ ++v+ +P+l ++++ge + ++a+ ++
  KIR64394.1  42 LEEIAGEMGDQVSIVKLN-IDENPETARAYRVMSVPTLTVFKNGEPVQSIAGAKP 95 
                 556666666655555555.666778899**********************99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 774.51
//
Query:       KIR64395.1  [L=389]
Description: N-acetylmuramoyl-L-alanine amidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-38  131.0   0.0    6.2e-38  130.6   0.0    1.1  1  Amidase_3     N-acetylmuramoyl-L-alanine amidase
    5.3e-31  106.6   0.4    1.2e-14   54.3   0.1    3.0  3  PG_binding_1  Putative peptidoglycan binding domain
    5.4e-07   29.8   1.5        0.2   12.0   0.1    3.9  4  PG_binding_3  Predicted Peptidoglycan domain
     0.0033   17.7   0.1        0.1   12.9   0.0    2.5  2  PG_binding_2  Putative peptidoglycan binding domain


Domain annotation for each model (and alignments):
>> Amidase_3  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.0   1.4e-41   6.2e-38       1     174 [.     177     356 ..     177     357 .. 0.94

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 1.4e-41
   Amidase_3   1 ividpGHGgkdpGavgkng...lkEkdlnlkvalklaklLeakgaeVvltrdd.d.ksvslkeranianksradlfvsiHadsaanssasGvevfy..l 92 
                 +vidpGHGg+dpG v  +g    +E+dl+ ++a +l+ +L+a+g++V ltr     + ++  era++an+ +ad+f+s+H d++an++a+Gv ++   +
  KIR64395.1 177 VVIDPGHGGTDPGVVVPDGplrWTEADLVHDLASRLEGRLAAAGVRVQLTRGPtPhSCLPDAERAQLANSLGADVFISLHTDGHANPEAEGVATYHygT 275
                 8************99944444488****************************9544556889**********************************888 PP

   Amidase_3  93 eknekkaeskrlaksiqkelkkklglknrgvkeannlyvlrktkipavlvElgfisnpedakllkseeyqeklakaiaegik 174
                  +  ++a+ +rla  +q+e+++++gl++  ++ ++ + +lr t++pav vE+g++++p+d+ +l +++++++l +ai+ +++
  KIR64395.1 276 GNGVTSATGERLAGLVQREIVARTGLRDCRTHAKT-WELLRLTRMPAVRVEVGYLTSPTDRGRLVDPRFRDRLVEAIVAAVQ 356
                 89999******************************.******************************************9986 PP

>> PG_binding_1  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   8.8e-17   3.9e-13       1      57 []       9      67 ..       9      67 .. 0.92
   2 !   54.3   0.1   2.6e-18   1.2e-14       1      56 [.      88     143 ..      88     144 .. 0.96
   3 ?   -2.2   0.0       1.1   4.9e+03      22      35 ..     339     352 ..     326     361 .. 0.57

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 8.8e-17
                  BSHHHHHHHHHHHHTT--...SSSSSB--HHHHHHHHHHHHHTTST-SSSBSHHHHHHH CS
  PG_binding_1  1 sgedvkelqryLsrlGyl..sgpadgtfgpateeaVkefQqffgLpvtGildpaTlaal 57
                  +g++v+e++  L+ l  l    +a + f+++te+aV++fQq +gL v+G+++++T++al
    KIR64395.1  9 RGPAVREIRAVLTGLDLLaaGPSAGDEFDADTERAVRAFQQSRGLSVDGRVGAETWRAL 67
                  6899***********9997444777********************************98 PP

  == domain 2  score: 54.3 bits;  conditional E-value: 2.6e-18
                   BSHHHHHHHHHHHHTT--.SSSSSB--HHHHHHHHHHHHHTTST-SSSBSHHHHHH CS
  PG_binding_1   1 sgedvkelqryLsrlGylsgpadgtfgpateeaVkefQqffgLpvtGildpaTlaa 56 
                   +gedv+ lq++L   Gy+ g ad ++g  t +aV +fQ+ +gL+++G  +p+T+  
    KIR64395.1  88 TGEDVRSLQERLLEMGYDVGRADAVYGVRTSRAVAQFQREMGLKPDGSCGPQTMGT 143
                   59***************************************************965 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.1
                   SSSB--HHHHHHHH CS
  PG_binding_1  22 adgtfgpateeaVk 35 
                   +d +f++ ++ea+ 
    KIR64395.1 339 VDPRFRDRLVEAIV 352
                   44566666666653 PP

>> PG_binding_3  Predicted Peptidoglycan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   4.4e-05       0.2       2      33 ..      43      70 ..      42      83 .. 0.78
   2 !    8.8   0.0   0.00043       1.9       3      32 ..      92     122 ..      90     128 .. 0.85
   3 !    8.7   0.0   0.00045         2       2      32 ..     120     145 ..     119     162 .. 0.85
   4 ?   -1.9   0.0       0.9   4.1e+03      40      57 ..     345     362 ..     342     370 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.4e-05
                  HHHHHHHHHT.....S---S---HHHHHHH... CS
  PG_binding_3  2 aivilQriLgklgydvkvDGiiGpkTlaAve.a 33
                  a++ +Q+  g     ++vDG +G +T +A+  a
    KIR64395.1 43 AVRAFQQSRG-----LSVDGRVGAETWRALDaA 70
                  7888888888.....***************753 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00043
                   HHHHHHHHT.....S.---S---HHHHHHH. CS
  PG_binding_3   3 ivilQriLgklgydv.kvDGiiGpkTlaAve 32 
                   ++ lQ+ L ++gydv ++D + G +T +Av 
    KIR64395.1  92 VRSLQERLLEMGYDVgRADAVYGVRTSRAVA 122
                   6789*99999***9868*************3 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00045
                   HHHHHHHHHT.....S---S---HHHHHHH. CS
  PG_binding_3   2 aivilQriLgklgydvkvDGiiGpkTlaAve 32 
                   a++ +Qr +g     +k+DG  Gp+T+  ++
    KIR64395.1 120 AVAQFQREMG-----LKPDGSCGPQTMGTLR 145
                   7889999999.....***********98885 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.9
                   HHHHHHHHHHHHHHHHHH CS
  PG_binding_3  40 daLlkainlarrefyldl 57 
                   d+L++ai  a ++ y+ +
    KIR64395.1 345 DRLVEAIVAAVQRMYFPI 362
                   789999999999988876 PP

>> PG_binding_2  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.074   3.3e+02      18      52 ..      13      49 ..       9      51 .. 0.77
   2 !   12.9   0.0   2.3e-05       0.1      12      51 ..      86     125 ..      83     127 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.074
  PG_binding_2 18 aeevqaaLsrLGy.ydg.eaggafrealrdALrafia 52
                  ++e++a+L +L +  +g +ag  f+  +++A raf++
    KIR64395.1 13 VREIRAVLTGLDLlAAGpSAGDEFDADTERAVRAFQQ 49
                  567888888888854442577899**********985 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.3e-05
  PG_binding_2  12 vlaedvaeevqaaLsrLGyydgeaggafrealrdALrafi 51 
                   +l+++ ++++q+ L ++Gy  g a+ +++  + +A ++f+
    KIR64395.1  86 PLTGEDVRSLQERLLEMGYDVGRADAVYGVRTSRAVAQFQ 125
                   79999*********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2800.51
//
Query:       KIR64396.1  [L=221]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.035   14.3   0.0      0.053   13.8   0.0    1.3  1  Acetyltransf_1  Acetyltransferase (GNAT) family
       0.15   12.0   0.0       0.25   11.4   0.0    1.3  1  FR47            FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.9e-06     0.053      32      99 ..      58     136 ..      20     145 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.9e-06
                     TCEEEEEEETTEEEEEEEEEEEET...........TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEE CS
  Acetyltransf_1  32 aegllvaeedgeliGfisllkipd...........ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivl 99 
                      +++ +a+ dg ++Gf+++ +               + + a +   +V   + g GlG++L++ +++ + ++gik+i++
      KIR64396.1  58 GSCGKLAYVDGMPAGFVMYAPPAYvprsmafptspVSADAALLMTAHVVAPFAGGGLGRMLVQGVARDLTKRGIKAIEA 136
                     33455589999******8888888888888888888889999999******************************9976 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.8e-05      0.25      29      57 ..     105     133 ..      92     139 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.8e-05
                 E-GGG-SSSHHHHHHHHHHHHHHHS-S-E CS
        FR47  29 vlpehrrrGlgsrlvkalakeiaergktv 57 
                 v   + + Glg+ lv+ +a+++ +rg+++
  KIR64396.1 105 VVAPFAGGGLGRMLVQGVARDLTKRGIKA 133
                 55668899******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1632.58
//
Query:       KIR64397.1  [L=438]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-40  137.6   0.0    6.3e-40  137.5   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    9.1e-11   41.2   0.0    2.6e-10   39.7   0.0    1.6  1  Aminotran_MocR   Alanine-glyoxylate amino-transferase
  ------ inclusion threshold ------
       0.19   11.0   0.1       0.45    9.8   0.1    1.5  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   0.0   1.1e-43   6.3e-40      19     363 .]      51     400 ..      35     400 .. 0.90

  Alignments for each domain:
  == domain 1  score: 137.5 bits;  conditional E-value: 1.1e-43
                    HHHHHHHHHHH.HHHHHTSTTST-BTTHHHHHHHHHHHHHC...TCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHH CS
  Aminotran_1_2  19 tlpevakaeke.galaggtlneygpidglpeleealakflg...rseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknil 110
                    +l++v +   + g + g t+ +yg  +g+ el+e++++ +     +      +e  vvv+ G +++++++++l+ l+pgd++l+  pty     ++
     KIR64397.1  51 PLDAVGEMLGRlGSEHGVTTLQYGIGQGSLELRERICEVMAfsgIDASCGASPE-DVVVTVGGQQALDLVARLF-LDPGDVVLAEGPTYVGALGVF 144
                    555555555557788889999****************99998655557778899.99999999***********.9******************** PP

                    HHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEE.ESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHG CS
  Aminotran_1_2 111 rlsggevvryplyseedfhldlealeealkeapegnkktkvilv.esphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatra 205
                    ++++++vv +p++   d +l  eale+a++e++    ++k++++  + +NP G+ +++e  e +ld++++ +ll++ D+ Y+ + f+  da +  +
     KIR64397.1 145 QAAQAQVVHVPMD---DDGLIPEALETAVAELARAGRRVKFLYTiPTYQNPMGVTLSEERRERVLDICERAGLLVIEDDPYGQLGFE-GDAPR-PL 235
                    ***********55...779***********************853899**************************************9.56655.88 PP

                    GSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS...T CS
  Aminotran_1_2 206 nveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael...g 296
                     + +++ ++ ++++sK f+ +G+RvG+il+  av++ l ++s + +   s ++qaav++ l + +  +++l+  r+ + +rr+ l ++L++l   g
     KIR64397.1 236 RARRRDGVFYLSTFSKTFA-PGLRVGWILAPHAVRDKLVIASEANILcpSGYAQAAVSTYLGTMPW-REQLKVYRELYRERRDALLAALEDLmpaG 329
                    8888889***********5.**************************9*999999999999999996.57********************999**** PP

                    EEEECCSCSSEEEEEETHH.CHHHHHHHHHHTCTEEEEEGGGGTS....TTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 297 lkvlasqsgmflltdlsae.takelskkLleevgvyvtpgtsftv....pgrlRitvAglteeeleelveal 363
                     +++ + +g+f++  l+   +ak++    +    v+ +pgt f++    +g+ R++++  t+e ++e v++l
     KIR64397.1 330 TTWTRPTGGLFVWASLPDGlDAKAMVPRSIAA-RVAYVPGTGFYAdgtgTGNMRLNYSFPTPERIREGVRRL 400
                    *************9999886777777776666.7*********************************99986 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   4.4e-14   2.6e-10     129     408 ..     132     403 ..     125     414 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 4.4e-14
                     EEES--HHHHHHHHHHT-EEEEEEEETTE..E-H..HHHHHHHHC-TTEEEEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-TTSS- CS
  Aminotran_MocR 129 vtvpGydrhfllleelGielltvdlqddG..pdv..daveklvaedasvkGilavpkysnptGetiseevarrlaalkaaapdfrifaddayavh 219
                        p y   + + +    +++ v+++ddG  p+    av +l+     vk ++++p+y np G t+see+  r+  +   a  + +  dd y   
      KIR64397.1 132 AEGPTYVGALGVFQAAQAQVVHVPMDDDGliPEAleTAVAELARAGRRVKFLYTIPTYQNPMGVTLSEERRERVLDICERAG-LLVIEDDPYGQL 225
                     5667788888888899999**********5544322456677777889**********************999999988775.67889****987 PP

                     BS.SSSS----HHHHHHHHT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHC-S---HHHHHHHHHHHHHSTHHHHHHHHHHHHHH CS
  Aminotran_MocR 220 dlvaeedkdanivalardaGhpdrafvlastskitfaGaGvafvassedniawlkkylGlqsiGpdkveqlrhvkflkdyeGlealmrdhaelia 314
                      + +++++   +      a   d  f l++ sk    G  v+ + + ++    l     ++ + p    q+    +l  +   + +++ ++el +
      KIR64397.1 226 GFEGDAPRP--L-----RARRRDGVFYLSTFSKTFAPGLRVGWILAPHAVRDKLVIASEANILCPSGYAQAAVSTYLGTM-PWREQLKVYRELYR 312
                     775555553..3.....3444555677777777555599999999887776777778889999*******9877766655.578899******** PP

                     HHHHHHHHHHHHHHTTTSSEEE---SBSS-EEEEESSS-.HHHHHHHHHHCTEE---TTTTSSTT--SSS-EEEE--SSS-HHHHHHHHHHHHHH CS
  Aminotran_MocR 315 pkfeavlevleaelggaevatwteprGGyfisldtldgv.akrvvklaeeaGvsltaaGatypaGedpkdrnirlaptlppleevetamdvvatc 408
                      + +a+l +le+ + ++  +twt p+GG f+     dg  ak +v  + +a v+  +    y  G      n+rl  ++p+ e++++ ++ +a  
      KIR64397.1 313 ERRDALLAALEDLMPAG--TTWTRPTGGLFVWASLPDGLdAKAMVPRSIAARVAYVPGTGFYADGTG--TGNMRLNYSFPTPERIREGVRRLAGV 403
                     ***********999887..69**********999999975788999999********9999999986..579**************999988765 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   7.5e-05      0.45      42     144 ..     107     219 ..      96     223 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 7.5e-05
                      EEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTE......EEEEEB-GGGB---H.. CS
  DegT_DnrJ_EryC1  42 iavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitert......kaIlpVhlyGqvadm.. 127
                      + +  G +Al l+ r l ++pgd V+    t+v+   + + + a++v v +d d   + p+a+e a+ e        k   ++ +y +++ +  
       KIR64397.1 107 VVTVGGQQALDLVAR-LFLDPGDVVLAEGPTYVGALGVFQAAQAQVVHVPMDDDG--LIPEALETAVAELAragrrvKFLYTIPTYQNPMGVtl 197
                      555566777766655.56899******************************9554..4589999999987766667788888888888875533 PP

                      .....HHHHHHHHHCT-EEEEE CS
  DegT_DnrJ_EryC1 128 .....dalkaiaakhglkvieD 144
                           +++ +i+++ gl vieD
       KIR64397.1 198 seerrERVLDICERAGLLVIED 219
                      4444457999999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3096.91
//
Query:       KIR64398.1  [L=332]
Description: D-alanine--D-alanine ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-49  167.6   0.0      3e-49  167.4   0.0    1.1  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    1.2e-16   61.0   0.2    6.4e-09   36.2   0.1    2.3  2  Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
    4.1e-08   33.4   0.0    6.5e-08   32.8   0.0    1.2  1  ATP-grasp_3      ATP-grasp domain
    1.2e-07   31.5   0.0    2.3e-07   30.6   0.0    1.4  1  ATP-grasp        ATP-grasp domain
    4.8e-07   29.5   0.0    1.8e-06   27.6   0.0    1.8  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
      9e-05   21.8   0.0       0.16   11.1   0.0    2.2  2  ATPgrasp_ST      Sugar-transfer associated ATP-grasp
    0.00012   21.7   0.0     0.0002   21.0   0.0    1.4  1  RimK             RimK-like ATP-grasp domain
     0.0017   17.6   0.0     0.0043   16.2   0.0    1.6  2  TTL              Tubulin-tyrosine ligase family
  ------ inclusion threshold ------
      0.017   14.7   0.0       0.26   10.9   0.0    2.3  1  ATP-grasp_4      ATP-grasp domain
      0.098   11.9   0.0       0.21   10.8   0.0    1.5  2  ATPgrasp_YheCD   YheC/D like ATP-grasp


Domain annotation for each model (and alignments):
>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.4   0.0   1.7e-52     3e-49       2     203 ..     121     324 ..     120     325 .. 0.97

  Alignments for each domain:
  == domain 1  score: 167.4 bits;  conditional E-value: 1.7e-52
                      HHHTT--B--EEEEETTHHCH-H-.HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--ESEEEEEEEEE.T CS
  Dala_Dala_lig_C   2 lkaaGlpvvpyvvlekeeakeekk.ellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkydekvlvEeaiegreievavlg.n 93 
                      l++aGlp++++v+l +++++e    ++l++++++lg+p++VKpa+ GS +G + v+ ++ l +a+   f y ++ lvE++++g ++ v+v++  
       KIR64398.1 121 LREAGLPTPDWVALPHDRFSELGAvAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDAASLPAAMVGCFAYHSTALVERYVSGMDVAVSVVDlG 214
                      789*************999887654899****************************************************************66 PP

                      SSCEEEEEEEEE-SSSSS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEESS---STTSHHHHH CS
  Dala_Dala_lig_C  94 eklevsevgeivvkkgfydyeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNtlPGfTeiSlfpkl 187
                      e +++++++eiv+++g+ydy+a+y+  +++ + pa+l++ev++++  +a+ a++al+lr+l+RvD++++++g++ + EvN  PG+Te+Sl+p +
       KIR64398.1 215 EGPQALPAVEIVPRNGVYDYAARYTAGRTTWHTPARLDPEVADTVARVAVAAHTALGLRDLSRVDLIVDADGQPHVLEVNVSPGMTETSLLPLA 308
                      67**********************99******************************************************************** PP

                      HHCTT--HHHHHHHHH CS
  Dala_Dala_lig_C 188 akasGlefkkLvdqli 203
                      ++a+Gl+f  L+ +l+
       KIR64398.1 309 VQAAGLDFGRLIGSLV 324
                      ************9998 PP

>> Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   5.7e-08    0.0001       2      28 ..      22      48 ..      21      66 .. 0.87
   2 !   36.2   0.1   3.6e-12   6.4e-09      71     103 .]      71     103 ..      66     103 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 5.7e-08
                     EEEEEE-SSTTHHHHHHHHHHHHHHCH CS
  Dala_Dala_lig_N  2 iavlfGGkStEhevSlvsaksvlkald 28
                     ++vl+GG S E++vSl s++ vl+al+
       KIR64398.1 22 VLVLAGGLSYERDVSLRSGRRVLDALR 48
                     89************************4 PP

  == domain 2  score: 36.2 bits;  conditional E-value: 3.6e-12
                      --SEEEEE-TTTTTTSSHHHHHHHHTT--BSS- CS
  Dala_Dala_lig_N  71 eldvvfpvlhGkngEDGtlqgllellgipyvGs 103
                        d v+++lhG+ gEDG+l g+l+l+++pyvG+
       KIR64398.1  71 PPDAVVIALHGATGEDGSLRGVLDLCDVPYVGC 103
                      5799****************************9 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   3.6e-11   6.5e-08       3     155 ..     113     294 ..     111     299 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 3.6e-11
                  SHHHHHHHHTTT.S---...................-EESS--SSSEEEEESS-------B--SS--TTE.............EEEE---SEEEEEEE CS
  ATP-grasp_3   3 dKlktykkLkeagvkvP...............tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve......lvqefieGkplSvsl 79 
                  dK      L+eag+++P                 + +  +++   +l vKp++G+ g ++ vv++  ++ aa+          lv ++++G ++ vs+
   KIR64398.1 113 DKPSAKAVLREAGLPTPdwvalphdrfselgaVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDAASLPAAMVGCFayhstaLVERYVSGMDVAVSV 210
                  7777888999999999988777665554444333334444444999********************99988876544677778*************** PP

                  EE.SSSEEEEEEEEEEEET......TEEEEEEES----H......HHHHHHHHHHHHTTSTT--EEEEEEEEESS..SEEEEEEE CS
  ATP-grasp_3  80 lsdgekvlvlavnrqliekaeke..fvyaGnvtpietel......keevvelaeevvekleglaGyvGvDlvlkd.eepyviEvN 155
                  +  ge  + l   + +  ++  +   +y+ + t  +t        ++ v ++a  +  +l gl+ +  vDl++   ++p+v+EvN
   KIR64398.1 211 VDLGEGPQALPAVEIVPRNGVYDyaARYTAGRTTWHTPArldpevADTVARVAVAAHTAL-GLRDLSRVDLIVDAdGQPHVLEVN 294
                  ********9999998888877668877776665554443332133455555555566677.***********97669******** PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.3e-10   2.3e-07       4     152 ..     124     291 ..     121     305 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.3e-10
                 TT--B-EEEEECCHH........HHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC..GTTCEEEEE----SEEEEEEEEEETTC-EEE CS
   ATP-grasp   4 lglpvprflaveske........eleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal..keekvivEefvpfekElsvlvvrsaeGetaf 92 
                 +glp+p+++a+ ++          l++++++lglp++vK +  g +G G  vvr++++l+ a+  +   + + +vE +v+  + ++v vv   eG  ++
  KIR64398.1 124 AGLPTPDWVALPHDRfselgavaVLDRIVDRLGLPLMVK-PAQGGSGLGAAVVRDAASLPAAMVGCfaYHSTALVERYVS-GMDVAVSVVDLGEG-PQA 219
                 566666666555443333333337889999*********.99999****************99988888999*******9.799***********.999 PP

                 --EEEEEEETTEEEEEE..........ECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCT..EE CS
   ATP-grasp  93 ypvvetvqedgilrlsv..........apaevsekaqkkaeeiakkiveeLggvGvfavElFvledge..ll 152
                 +p ve v ++g++ +             pa+++ + + +++++a  +  +Lg   +  v l v +dg+  +l
  KIR64398.1 220 LPAVEIVPRNGVYDYAArytagrttwhTPARLDPEVADTVARVAVAAHTALGLRDLSRVDLIVDADGQphVL 291
                 ************987641122222222577777778888888888888888888888888888777775544 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0     1e-09   1.8e-06       1     178 [.     113     295 ..     113     317 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1e-09
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHH......HHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSS CS
  CPSase_L_D2   1 Dkesakealkkinvpvvpssaapvetleeal......aiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgp 92 
                  Dk sak+ l++++ p+ + +a p +   e        +i++++g P ++k+a g+ G+G  v+r+ + l +++   +a        ++ lve++++g+
   KIR64398.1 113 DKPSAKAVLREAGLPTPDWVALPHDRFSELGavavldRIVDRLGLPLMVKPAQGGSGLGAAVVRDAASLPAAMVGCFAYH------STALVERYVSGM 204
                  7788888888888888888888777666643001111467899******************************9999888......799*******97 PP

                  EEEEEEEEEETTS....-EEEEEEEEECCEC....TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEES CS
  CPSase_L_D2  93 keiEvevlrDakg....nvitvcerenslql....rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNt 178
                   ++ v v+   +g     ++ +  r+ +         +      P++ L++e  +++ + av++  ++g++    v+ ++d+ +++  v+EvN 
   KIR64398.1 205 -DVAVSVVDLGEGpqalPAVEIVPRNGVYDYaaryTAGRTTWHTPAR-LDPEVADTVARVAVAAHTALGLRDLSRVDLIVDA-DGQPHVLEVNV 295
                  .7999999877663222467888887776555656778888899986.9999999999999999999***99999*999997.99999999994 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00055      0.98      19      81 ..     111     177 ..     103     195 .. 0.82
   2 !   11.1   0.0   9.2e-05      0.16     229     269 ..     260     300 ..     253     314 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00055
  ATPgrasp_ST  19 vddKlkfkelalraglkvpkllgvikeq....aeiseleafvkeleegvviKpakgsgGkGilvite 81 
                    dK   k ++ +agl++p+ ++  +        ++ l+ +v +l   +++Kpa+g +G G  v+ +
   KIR64398.1 111 AWDKPSAKAVLREAGLPTPDWVALPHDRfselGAVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRD 177
                  5589999999**********7777666687778888889999999544**************99854 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 9.2e-05
  ATPgrasp_ST 229 lelaakaaeklpglgylG.wDivldeekgplllElNarpgla 269
                    +a+ a++  +gl+ l+ +D+ +d++++p +lE+N  pg++
   KIR64398.1 260 ARVAVAAHT-ALGLRDLSrVDLIVDADGQPHVLEVNVSPGMT 300
                  455666666.8899988869********************97 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.1e-07    0.0002       7     172 ..     117     302 ..     111     312 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.1e-07
                 HHHHHHHTT-----.EEEESS...-S-HHHHHHTT-...-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHH...GGG--EEEEE--SS-SEEEEEEEET CS
        RimK   7 slklLakakikvpn.talard...eedaekliekik..lrfPvvvKsvegsqGikvvlakkeqklkqvlea...lkeailvqeyieeaenediRvlvvd 96 
                 + ++L  a++++p  +al +d   e  a++++++i   l+ P++vK  +g  G++  + ++  +l   + +    + + lv  y+    + d+ v vvd
  KIR64398.1 117 AKAVLREAGLPTPDwVALPHDrfsELGAVAVLDRIVdrLGLPLMVKPAQGGSGLGAAVVRDAASLPAAMVGcfaYHSTALVERYVS---GMDVAVSVVD 212
                 5556666665555423444431113456777787766789***************************999987677778*****96...5677777775 PP

                 ....TEEEEEEEEE--SS..S----TTTT-EE..EE----HHH....HHHHHHHHHHCT-.SEEEEE.EEEETTEEEEEEEESS--SHHH CS
        RimK  97 ....devvaalrrvskeG..dFRsnlhrGgva..eklqlseee....kelAikaakamel.vvaGvD.llrakrgllvlEvnsspgleki 172
                      +   a++ v ++G  d+ +    G  +   ++ l++e      ++A+ a  a++l ++  vD +++a+ ++ vlEvn spg+++ 
  KIR64398.1 213 lgegPQALPAVEIVPRNGvyDYAARYTAGRTTwhTPARLDPEVadtvARVAVAAHTALGLrDLSRVDlIVDADGQPHVLEVNVSPGMTET 302
                 33336999**********76777777777665336788888762111578899988988856889**8899999************9876 PP

>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.89   1.6e+03      69     108 ..     159     200 ..     149     202 .. 0.77
   2 !   16.2   0.0   2.4e-06    0.0043     237     266 ..     273     302 ..     254     309 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.89
                 ---SS---XX------BSSTHHHHHH..HH..SSS-EEEEB- CS
         TTL  69 wIvKpsasarGkgirvfnkledikki..vsqsqkeplvvqkY 108
                 + vKp+++  G g  v+++ +++++      + +++ +v +Y
  KIR64398.1 159 LMVKPAQGGSGLGAAVVRDAASLPAAmvGCFAYHSTALVERY 200
                 579*****************9999765533445555566655 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.4e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXX..XXX CS
         TTL 237 felyGvDilidenlkpwLlEvNasPdlkst 266
                 ++l +vD+++d + +p +lEvN sP +++t
  KIR64398.1 273 RDLSRVDLIVDADGQPHVLEVNVSPGMTET 302
                 57889********************99887 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014      0.26      52     150 ..     192     295 ..     155     300 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
  ATP-grasp_4  52 eesflvEeyieGeEfavdayfdeeGepvilni..lkke...faseed.vsdrlyvtsakvieetlealeellkevnallglknfpvHiElrvsedgki 143
                  ++++lvE y+ G  +av +    eG + + ++  + ++    + +++    + + t+a++  e +++++++  +++++lgl++    + l v++dg+ 
   KIR64398.1 192 HSTALVERYVSGMDVAVSVVDLGEGPQALPAVeiVPRNgvyDYAARYtAGRTTWHTPARLDPEVADTVARVAVAAHTALGLRDLS-RVDLIVDADGQP 288
                  56799*************9999999998865511433311123333414456699***************************985.79********99 PP

  ATP-grasp_4 144 ipiEvnp 150
                  +++Evn 
   KIR64398.1 289 HVLEVNV 295
                  9999985 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.3   4.1e+03      51      68 ..     159     176 ..     152     180 .. 0.82
   2 ?   10.8   0.0   0.00012      0.21     188     231 ..     257     300 ..     232     310 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.3
  ATPgrasp_YheCD  51 vylKpanGskGkgilrie 68 
                     +++Kpa+G  G g   ++
      KIR64398.1 159 LMVKPAQGGSGLGAAVVR 176
                     589*****9998866655 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00012
  ATPgrasp_YheCD 188 elalelaealeesfgrlgElG.lDlgidkegkvWllEvNskpgrs 231
                     +++ ++a a  +++g l +l+ +Dl +d +g+  +lEvN  pg +
      KIR64398.1 257 DTVARVAVAAHTALG-LRDLSrVDLIVDADGQPHVLEVNVSPGMT 300
                     444555544444444.6666658*******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2317.50
//
Query:       KIR64399.1  [L=342]
Description: chromosome partitioning protein ParB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.9e-26   89.9   1.0    1.9e-25   89.0   0.3    1.8  2  ParBc         ParB-like nuclease domain
    3.8e-17   61.8   3.6    1.1e-16   60.3   3.6    1.9  1  HTH_ParB      HTH domain found in ParB protein
    8.6e-05   22.3   0.0    0.00027   20.8   0.0    1.8  1  TrmB          Sugar-specific transcriptional regulator TrmB
     0.0084   15.9   0.4      0.035   13.9   0.1    2.2  2  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
      0.027   14.4   1.8       0.06   13.3   0.1    2.3  2  HTH_Crp_2     Crp-like helix-turn-helix domain
      0.032   14.3   5.0       0.13   12.4   1.8    2.7  2  Phage_TAC_11  Phage tail tube protein, GTA-gp10
      0.094   12.7   0.1      0.094   12.7   0.1    2.7  3  HTH_29        Winged helix-turn helix


Domain annotation for each model (and alignments):
>> ParBc  ParB-like nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.3   7.3e-29   1.9e-25       2      90 .]      76     165 ..      75     165 .. 0.99
   2 ?   -1.9   0.0       1.7   4.3e+03      19      35 ..     239     255 ..     219     292 .. 0.72

  Alignments for each domain:
  == domain 1  score: 89.0 bits;  conditional E-value: 7.3e-29
       ParBc   2 evplseirpnplqprkd.spekieelvasIkkkGllqPiivrktrqgryeiiaGerRlrAakrlglkevpvivleiddeeamalslieni 90 
                 evp++ i pnp+qpr+  ++e++eel+ sI++ G+lqPi+vr  ++++ye+++GerR+rAa+  g +++p+iv+++ d+ +++ +l eni
  KIR64399.1  76 EVPVDAIVPNPKQPRQVfDEEALEELKTSIQEVGFLQPIVVRALDGEKYELVMGERRWRAAQAVGRENIPAIVRDTRDDAMLRDALLENI 165
                 8***************************************************************************************97 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.7
       ParBc  19 spekieelvasIkkkGl 35 
                 ++++ e+l+a I ++Gl
  KIR64399.1 239 EAQAQEQLAARIVAEGL 255
                 45556666666665554 PP

>> HTH_ParB  HTH domain found in ParB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   3.6   4.4e-20   1.1e-16       2      50 ..     216     264 ..     215     266 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 4.4e-20
    HTH_ParB   2 evqeavsegkiseGHARaLlslkdeelqlqlaekiieegLsVRetEklv 50 
                 +vq+ v +g +s+GHARaLlsl++ + q+qla +i++egLsVR tE++v
  KIR64399.1 216 QVQRRVAAGLLSAGHARALLSLDEAQAQEQLAARIVAEGLSVRSTEEIV 264
                 69*********************************************99 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.1e-07   0.00027      10      46 ..     175     211 ..     170     221 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.1e-07
                 CCCHCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHH CS
        TrmB  10 EakvYlaLlklgpatadeiaeelgvprskvYevLrsL 46 
                 Ea +Y+ Ll++  at +e+a+++g++r+++ +++r L
  KIR64399.1 175 EAAAYQQLLEEFGATHEELARRIGRSRPQISNTIRLL 211
                 99*****************************999877 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.6   4.1e+03      17      27 ..     129     139 ..     115     141 .. 0.62
   2 !   13.9   0.1   1.4e-05     0.035      13      40 ..     182     210 ..     176     224 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.6
      HTH_23  17 GlsvreIAreL 27 
                 G ++ ++A++ 
  KIR64399.1 129 GERRWRAAQAV 139
                 55555555555 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.4e-05
      HTH_23  13 llae.GlsvreIAreLgvsrrTvyrwlkr 40 
                 ll e G++ +e Ar+ g+sr ++++ ++ 
  KIR64399.1 182 LLEEfGATHEELARRIGRSRPQISNTIRL 210
                 55669********************9986 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.3e-05      0.06      18      45 ..     184     211 ..     160     213 .. 0.80
   2 ?   -0.8   0.2      0.62   1.6e+03       2      30 ..     220     249 ..     219     257 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.3e-05
                 EEEEHHHHHHHHHTTSSHHHHHHHHHHH CS
   HTH_Crp_2  18 ielpltqeelAsmlGltretvsrilseL 45 
                  e+  t+eelA+++G +r ++s +++ L
  KIR64399.1 184 EEFGATHEELARRIGRSRPQISNTIRLL 211
                 36789******************99866 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.62
                 HHHHHHHHHHCTTTC..EEEEEHHHHHHHHH CS
   HTH_Crp_2   2 RlArfLlrlaeragg..eielpltqeelAsm 30 
                 R+A+ Ll   +  ++  +++    qe+lA++
  KIR64399.1 220 RVAAGLLSAGHA-RAllSLDEAQAQEQLAAR 249
                 666666653332.233344445567777765 PP

>> Phage_TAC_11  Phage tail tube protein, GTA-gp10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2     0.084   2.2e+02      23      56 ..     180     213 ..     161     231 .. 0.83
   2 ?   12.4   1.8   5.2e-05      0.13      17      77 ..     226     287 ..     213     298 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.084
  Phage_TAC_11  23 aeLeeelgaglvalveRfaegrlsardvievirl 56 
                   ++L ee+ga+  +l++R+   r +++  i+++ l
    KIR64399.1 180 QQLLEEFGATHEELARRIGRSRPQISNTIRLLNL 213
                   4788999999999****99999999988888765 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.2e-05
  Phage_TAC_11  17 LtlgalaeLeeelgag.lvalveRfaegrlsardvievirlGLiGgGmeaseadalvaayvg 77 
                   L+ g++++L +  +a+   +l++R+ ++ ls+r  +e+++l+L +g ++a +a++   a++ 
    KIR64399.1 226 LSAGHARALLSLDEAQaQEQLAARIVAEGLSVRSTEEIVALALVDGPAKAPAAKRRTTAHAP 287
                   55666666666666665689***************************999999987776655 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.5         7   1.8e+04      45      55 ..       2      12 ..       2      13 .. 0.77
   2 ?   12.7   0.1   3.7e-05     0.094       3      37 ..     177     212 ..     176     243 .. 0.77
   3 ?   -1.0   0.0      0.72   1.8e+03       1      20 [.     230     248 ..     230     252 .. 0.84

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 7
      HTH_29 45 ldrrrsgrprn 55
                ++r+r+g +r 
  KIR64399.1  2 KNRPRGGLGRG 12
                57999998885 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.7e-05
      HTH_29   3 qallllaeGvs.tvsqiAkllglsrrtvyrwlkrfe 37 
                 +a + l e+ + t+ ++A++ g sr+++ +++++ +
  KIR64399.1 177 AAYQQLLEEFGaTHEELARRIGRSRPQISNTIRLLN 212
                 566777777888*********************987 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.72
      HTH_29   1 RaqallllaeGvstvsqiAk 20 
                 +a+all l+e++    q+A+
  KIR64399.1 230 HARALLSLDEAQA-QEQLAA 248
                 6899999999997.888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2453.58
//
Query:       KIR64400.1  [L=285]
Description: chromosome partitioning protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-59  200.6   0.0    2.5e-59  200.1   0.0    1.2  1  AAA_31       AAA domain
      3e-28   98.4   0.0    3.7e-28   98.1   0.0    1.1  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    2.7e-13   50.0   0.0    5.8e-13   48.9   0.0    1.4  1  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
      3e-12   46.5   0.0    7.8e-12   45.2   0.0    1.6  1  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
    3.8e-12   46.2   0.5    3.8e-11   42.9   0.5    2.3  1  ParA         NUBPL iron-transfer P-loop NTPase
    1.9e-11   43.8   0.3    4.5e-08   32.7   0.4    2.2  2  MipZ         ATPase MipZ
    2.9e-07   30.0   0.1    8.9e-07   28.4   0.0    1.8  2  ArsA_ATPase  Anion-transporting ATPase
     0.0031   16.5   0.1     0.0059   15.6   0.1    1.4  1  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
  ------ inclusion threshold ------
      0.015   15.1   0.2      0.039   13.7   0.1    1.7  2  CLP1_P       mRNA cleavage and polyadenylation factor CLP1 P-
      0.031   13.6   0.1      0.051   12.9   0.1    1.3  1  VirC1        VirC1 protein
      0.042   13.5   0.1       0.19   11.3   0.1    1.8  2  SRP54        SRP54-type protein, GTPase domain
       0.07   12.9   0.1       0.22   11.3   0.1    1.8  2  ATP_bind_1   Conserved hypothetical ATP binding protein
      0.082   12.5   0.0       0.21   11.1   0.0    1.7  1  AAA_25       AAA domain
      0.095   11.8   0.3       0.14   11.2   0.3    1.2  1  LpxK         Tetraacyldisaccharide-1-P 4'-kinase


Domain annotation for each model (and alignments):
>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.1   0.0     2e-62   2.5e-59       1     177 []      24     201 ..      24     201 .. 0.98

  Alignments for each domain:
  == domain 1  score: 200.1 bits;  conditional E-value: 2e-62
      AAA_31   1 gkvIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQanattglgiekneiektlyevlieeknikeaiiktk.venldlipssidLaeaeielv 98 
                 ++v+++anqKGGvGKTTt+vnla+ala  g++vL+vDlDpQ+na+tgl++ +++   ++y++li+++ ++e+++  + + nl  +p++idLa+aeielv
  KIR64400.1  24 TRVMCVANQKGGVGKTTTTVNLAVALALHGNRVLVVDLDPQGNASTGLNVPHHTGVPDVYDCLINSVPLEEVAQGVEgIPNLWCVPATIDLAGAEIELV 122
                 589***********************************************999999******************88889******************** PP

      AAA_31  99 elekkeeilkellekvkdeYDyiiiDcpPsLglltenaLvasdsviipvqaeayaleGleqllktieevkkklnpklei 177
                 ++  +e++l++++++   ++Dy++iDcpPsLgllt+naLva+++v+ip+q+e+yaleGl+ql+++i+ v+k+lnp+l++
  KIR64400.1 123 SVVARESRLSRAIDAYPGHFDYVFIDCPPSLGLLTVNALVAAQEVLIPIQCEYYALEGLNQLINNINLVRKHLNPRLDV 201
                 ***************************************************************************9985 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.0   2.9e-31   3.7e-28       2     128 .]      28     252 ..      27     252 .. 0.95

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 2.9e-31
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH.............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................. RF
        CbiA   2 aiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep.............................................. 54 
                 ++a++kGGvGKTt+++nLa+ala +g+rVl+vD+Dpq+n+++   gl   +++                                              
  KIR64400.1  28 CVANQKGGVGKTTTTVNLAVALALHGNRVLVVDLDPQGNAST---GLNVPHHTgvpdvydclinsvpleevaqgvegipnlwcvpatidlagaeielvs 123
                 79***************************************9...888888889999999*************************************** PP

                 ........................................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHHH CS
                 ........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ........................................................dlkrllellealgkkkalllkiagvvlnrvdgeneetllkeal 97 
                                                                         +l +l++ ++ ++k++++ l++  ++l+++d +   t+l +a+
  KIR64400.1 124 vvaresrlsraidaypghfdyvfidcppslglltvnalvaaqevlipiqceyyaleGLNQLINNINLVRKHLNPRLDVSTILLTMYDRR---TRLADAV 219
                 *****************************************************8888888888887788777777************99...9999999 PP

                 HHHHHHC.TS-EEE.EEE--CCHCCCCHHTS-H CS
                 xxxxxxx.xxxxxx.xxxxxxxxxxxxxxxxxx RF
        CbiA  98 eelkqry.gvpvlg.viprdeavaeapargepv 128
                 e+  + + g++vl+ vipr+++v+eap+ g++v
  KIR64400.1 220 EQDVRNHfGDKVLQaVIPRNVRVSEAPSYGQSV 252
                 99999999*********************9976 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   4.5e-16   5.8e-13       7     247 ..      32     275 ..      26     284 .. 0.78

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 4.5e-16
   Fer4_NifH   7 GkGGiGksttsqnlsaalaemgkkvlivGCDPkaD.strlll.ggkaqetvldtlrekgavedvkvedvvkkGyggvkcvesGGPepGvGCaGrgvi.t 102
                  kGG+Gk+tt+ nl+ ala +g++vl+v  DP+ + st l + +    + v d l +    e+v  +    +G  ++ cv +    +G+     +v+ +
  KIR64400.1  32 QKGGVGKTTTTVNLAVALALHGNRVLVVDLDPQGNaSTGLNVpHHTGVPDVYDCLINSVPLEEVAQG---VEGIPNLWCVPATIDLAGAEIELVSVVaR 127
                 59******************************97625555432444556666666666665666544...57888899****99999999987766615 PP

   Fer4_NifH 103 aielleelgayd.dlDfvlyDvLGDvvCGGfalPiredkaqevyivtsgelmalyaanniakgiekyaksgg..vrlgGliin..srkvddereliekf 196
                    l    +ay  ++D+v+ D           +      aqev+i  ++e  al   n++ + i+  +k+ +  + ++ ++    +r++   + + ++ 
  KIR64400.1 128 ESRLSRAIDAYPgHFDYVFIDCPPSLGLLTVNAL---VAAQEVLIPIQCEYYALEGLNQLINNINLVRKHLNprLDVSTILLTmyDRRTRLADAVEQDV 223
                 566677789**956*******9766533333333...469************************99988766357777776541156565556666667 PP

   Fer4_NifH 197 aeelgtkvle.vvPrdeivrkaelrkktvieyapeseqakeyrelarkilen 247
                  ++ g kvl+ v+Pr+  v +a    + v+ y+p s+ a  y e a++i+e 
  KIR64400.1 224 RNHFGDKVLQaVIPRNVRVSEAPSYGQSVMTYDPGSRGATSYFEAAQEIAER 275
                 7788999997368************************************986 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   6.1e-15   7.8e-12       4     223 ..      27     262 ..      24     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 6.1e-15
    CBP_BcsQ   4 lalqGvRGGvGttsllaaLawalhelgesvlviDlspdnlLrlhFnvdieqr.egwaraeldgapwrqaa..leyapgldllPfG.elnveekenlqql 98 
                 +++   +GGvG+t+ ++ La al  +g++vlv+Dl p+    +  nv++++        ++++ p+++ a  +e +p+l  +P    l+ +e e l ++
  KIR64400.1  27 MCVANQKGGVGKTTTTVNLAVALALHGNRVLVVDLDPQGNASTGLNVPHHTGvPDVYDCLINSVPLEEVAqgVEGIPNLWCVPATiDLAGAEIE-LVSV 124
                 6677779*****************************************8765145778999*****9865226779*******87245555555.7789 PP

    CBP_BcsQ  99 aekaeallaalkelkeqyrwillDlpagasaltrellaladlvllvvepdanc.........hvrLhq...qalpaaellLiNqfeaasqlqqDllqlW 185
                  +++++l +a+++  ++++++++D+p     lt ++l  a+ vl  ++ +  +          + L +   ++  + +++L+  ++   +l++ + q  
  KIR64400.1 125 VARESRLSRAIDAYPGHFDYVFIDCPPSLGLLTVNALVAAQEVLIPIQCEYYAleglnqlinNINLVRkhlNPRLDVSTILLTMYDRRTRLADAVEQDV 223
                 9999*****************************999999999998888886542222112223334330004445668899999999999999999999 PP

    CBP_BcsQ 186 lqsl.rrllPlvihrDealaEalaakqPlgeyrpdslaa 223
                 ++++ +++l  vi r   ++Ea  + q + +y p s  a
  KIR64400.1 224 RNHFgDKVLQAVIPRNVRVSEAPSYGQSVMTYDPGSRGA 262
                 966647778889999999999999999999999988766 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.5     3e-14   3.8e-11       4     141 ..      25     169 ..      22     273 .. 0.65

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 3e-14
        ParA   4 kviavlSgKGGVGKStvavnlAlaLakkglkvgllDaD.....iyGpsiprllgvee......ekpeqsekkliPvea...............kgikvm 76 
                 +v++v+  KGGVGK+t++vnlA+aLa +g +v ++D+D      +G ++p+ +gv +      +         +P+e                 +i + 
  KIR64400.1  25 RVMCVANQKGGVGKTTTTVNLAVALALHGNRVLVVDLDpqgnaSTGLNVPHHTGVPDvydcliN--------SVPLEEvaqgvegipnlwcvpATIDLA 115
                 7899**********************************33333356789999999885444441........344443331221120010112222222 PP

        ParA  77 SigfllesedeavvwrGpmkskaikqllkdvewgelDyLiiDlPPGtgDeqltvaqklplagavi 141
                   ++    e  +vv r + +s+ai     d++ g+ Dy++iD+PP  g   ltv   +  ++++i
  KIR64400.1 116 GAEI----ELVSVVARESRLSRAI-----DAYPGHFDYVFIDCPPSLG--LLTVNALVAAQEVLI 169
                 2222....2346677777777776.....556799999******9988..567777776666666 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.4   3.5e-11   4.5e-08       2      40 ..      26      64 ..      25      70 .. 0.92
   2 !    8.7   0.0   0.00071      0.91      86     136 ..     128     178 ..     106     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 3.5e-11
                EEEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TT CS
        MipZ  2 vivlgnekGGsGksttavhvavaLlkkGarvaaidldlr 40
                v+ ++n+kGG Gk+tt+v +avaL+ +G rv ++dld +
  KIR64400.1 26 VMCVANQKGGVGKTTTTVNLAVALALHGNRVLVVDLDPQ 64
                7889*********************************75 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00071
                 HHHHHHHHHHHHHH-SEEEEE--SS--HHHHHHHHT-SEEEEEEESSHHHH CS
        MipZ  86 vaeleelvadleaeldfividtPGsdsalsrlahsladtlvtPlndsfvdf 136
                  ++l++++++   ++d++ id+P s   l+  a   a  ++ P+   +  +
  KIR64400.1 128 ESRLSRAIDAYPGHFDYVFIDCPPSLGLLTVNALVAAQEVLIPIQCEYYAL 178
                 35999************************************9998766655 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0     7e-10   8.9e-07       8      48 ..      32      72 ..      24      95 .. 0.87
   2 ?   -1.1   0.0      0.64   8.1e+02     123     142 ..     140     156 ..     124     229 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 7e-10
                 ESTTSSHHHHHHHHHHHHHHTTS-EEEEE-STTTHHHHHHT CS
  ArsA_ATPase  8 GKGGVGKttvsaatavklsekgkkvllistDPAhslsDsfd 48
                  KGGVGKtt    +av l+ +g++vl++ +DP  + s  ++
   KIR64400.1 32 QKGGVGKTTTTVNLAVALALHGNRVLVVDLDPQGNASTGLN 72
                 5*******************************988876666 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.64
                  SSSSEEEEESBSCCHTCGGG CS
  ArsA_ATPase 123 eeydvvvlDtaPTGhtlrll 142
                   ++d+v +D +P    l+ll
   KIR64400.1 140 GHFDYVFIDCPPS---LGLL 156
                  6788888888884...4444 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   4.6e-06    0.0059      23      74 ..      18      70 ..       5      77 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.6e-06
                GGG-S-SEEEEEEE-.TTSSHHHHHHHHHHHHHCTT--EEEEEE--------- CS
        MeaB 23 lakaGraqvvGltGv.PGaGkstlvealglelrrrGkrvavlavDPsspftGG 74
                +++  r++v+ +     G+Gk t++ +l++ l+ +G+rv v+ +DP  + + G
  KIR64400.1 18 MPRPERTRVMCVANQkGGVGKTTTTVNLAVALALHGNRVLVVDLDPQGNASTG 70
                566667777777654168****************************9887665 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   3.1e-05     0.039       4      33 ..      35      64 ..      33      71 .. 0.91
   2 ?   -3.1   0.0       4.3   5.5e+03      26      52 ..     145     171 ..     141     182 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.1e-05
      CLP1_P  4 dsGKSTlarlLlNyalrkgrkpvyvDlDvG 33
                 +GK+T + +L+  ++ +g+++++vDlD+ 
  KIR64400.1 35 GVGKTTTTVNLAVALALHGNRVLVVDLDPQ 64
                59**************************95 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.3
      CLP1_P  26 vyvDlDvGqseispPgtislalverpi 52 
                 v++D+ +  + +++++ +++  v  pi
  KIR64400.1 145 VFIDCPPSLGLLTVNALVAAQEVLIPI 171
                 789999999999999999988776555 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     4e-05     0.051       4      39 ..      27      62 ..      24      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4e-05
       VirC1  4 itfcslkGGaGkttalmglcsalasdgkrvalfead 39
                + ++  kGG Gktt+ + l  ala +g+rv + + d
  KIR64400.1 27 MCVANQKGGVGKTTTTVNLAVALALHGNRVLVVDLD 62
                667889************************988776 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00015      0.19      11      38 ..      35      62 ..      25      70 .. 0.89
   2 ?   -1.0   0.0      0.91   1.2e+03     134     157 ..     193     216 ..     180     222 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
                TSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54 11 GaGKTttlaKLaallkkegkkvllvaaD 38
                G+GKTtt+  La  l  +g++vl+v +D
  KIR64400.1 35 GVGKTTTTVNLAVALALHGNRVLVVDLD 62
                9***********************9988 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.91
                 HHHHHHSSCSEEEEESTTSSSSTT CS
       SRP54 134 kaFkeavgitgviltklDgdakgG 157
                 k+ + +++++++ lt  D +++  
  KIR64400.1 193 KHLNPRLDVSTILLTMYDRRTRLA 216
                 567788999*********998875 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00017      0.22       6      35 ..      35      64 ..      33      77 .. 0.93
   2 ?   -1.9   0.0       1.8   2.3e+03      83      99 ..     132     150 ..     122     159 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
  ATP_bind_1  6 GsGKttfvgalseilelrgrsvavvNLDPA 35
                G+GKtt + +l+  l l g +v vv LDP 
  KIR64400.1 35 GVGKTTTTVNLAVALALHGNRVLVVDLDPQ 64
                9****************************5 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.8
  ATP_bind_1  83 deeleke.ed.dyllfDtP 99 
                 +++++ +  + dy+ +D+P
  KIR64400.1 132 SRAIDAYpGHfDYVFIDCP 150
                 556666654469******9 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00016      0.21      41      63 ..      33      56 ..      20      68 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
      AAA_25 41 apgtGKttlaldlalava.tGkpw 63
                 +g+GKtt +++la+a+a  G  +
  KIR64400.1 33 KGGVGKTTTTVNLAVALAlHGNRV 56
                58****************777654 PP

>> LpxK  Tetraacyldisaccharide-1-P 4'-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00011      0.14      35      71 ..      24      59 ..       6      61 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
                S-EEEEEESBSS-HSHHHHHHHHHHHTTTS..-EEEE CS
        LpxK 35 vpVivVGNitvGGtGKTPlvialvkllqarglkvgvl 71
                 +V++V N   GG GKT +++ l+ +l+ +g +v v+
  KIR64400.1 24 TRVMCVANQ-KGGVGKTTTTVNLAVALALHGNRVLVV 59
                679***995.6***********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 1965.06
//
Query:       KIR64401.1  [L=197]
Description: single-stranded DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-16   60.2   0.0    2.2e-16   59.6   0.0    1.4  1  R3H       R3H domain
     0.0073   16.2   0.1      0.017   15.0   0.0    1.7  2  KH_4      KH domain


Domain annotation for each model (and alignments):
>> R3H  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   2.5e-20   2.2e-16       2      60 .]     136     195 ..     135     195 .. 0.96

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 2.5e-20
                 HHHHHHHHHHHHHH-S--EEE-----SHHHHHHHHHHHHSS.EEEEEE--SS-SEEEEEE CS
         R3H   2 fllrvekklaefvkdtgrslefppmssyeRriiHelaeayg.leseSvGeepkRrvvvtk 60 
                  l +v+k+++e+vk+ g+++ ++pms++eR+ +H++++a+  +eseS+G ep+Rr+vv++
  KIR64401.1 136 ELAAVAKNAVEKVKEYGEPVRLEPMSAFERKCVHDVVNAMSgVESESEGVEPNRRIVVRP 195
                 5789************************************99****************85 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.9e-06     0.017      31      65 ..      81     115 ..      52     123 .. 0.71
   2 ?   -3.4   0.0         1   9.3e+03       8      23 ..     168     183 ..     165     193 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-06
        KH_4  31 ielnvegedlGrvIGkrGrtldAlqylvsaaanke 65 
                   ++v g  l  ++G rG tl Alq l+ +a+ ++
  KIR64401.1  81 PVVEVVGGRLQNLVGQRGATLEALQELARLAVFRQ 115
                 5566667777789*****************99765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1
        KH_4   8 lkalvddpeevevtee 23 
                 +  +v+++  ve + e
  KIR64401.1 168 VHDVVNAMSGVESESE 183
                 5566666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1444.18
//
Query:       KIR64402.1  [L=327]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-56  189.1   3.6    6.7e-56  188.8   3.6    1.1  1  60KD_IMP         60Kd inner membrane protein
     0.0052   16.1   0.1       0.01   15.1   0.1    1.4  1  MFS_Mycoplasma   Mycoplasma MFS transporter
     0.0076   15.4   0.2      0.011   14.8   0.2    1.1  1  LAP1C            Lamina-associated polypeptide 1C (LAP1C)
  ------ inclusion threshold ------
      0.011   15.9   4.0      0.018   15.3   0.5    2.4  2  DUF3382          Domain of unknown function (DUF3382)
      0.074   13.1   0.2       0.14   12.2   0.2    1.4  1  Peptidase_S49_N  Peptidase family S49 N-terminal
      0.093   12.6   8.9        1.2    9.0   0.4    2.9  3  DUF3487          Protein of unknown function (DUF3487)
        0.1   12.7   0.4       0.31   11.2   0.3    1.7  2  OSTbeta          Organic solute transporter subunit beta prot
       0.19   12.1   3.1       0.29   11.4   3.1    1.2  1  Tup_N            Tup N-terminal
       0.21   11.2   1.6        5.8    6.6   0.2    2.4  2  Baculo_11_kDa    Baculovirus 11 kDa family
       0.23   12.1   3.3       0.33   11.6   0.3    2.5  3  Sm_multidrug_ex  Putative small multi-drug export protein
       0.46   10.3   9.5       0.38   10.6   0.4    3.1  3  LapA_dom         Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> 60KD_IMP  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.8   3.6   4.1e-59   6.7e-56       1     164 [.      39     257 ..      39     259 .. 0.85

  Alignments for each domain:
  == domain 1  score: 188.8 bits;  conditional E-value: 4.1e-59
    60KD_IMP   1 yglaIilltiivrlillpltlkqlkssakmqelqPelkeiqekykkdkqklqqemmklYkkegvnplaGclplLiqlpifialyrvlrsla........ 91 
                 ++laI++l+++vr+il+p+++kq+ks+++mq+lqP++ke+qek+k d+++lq+emm+lY+ke++npl+Gclp+++q+p+f++l++vlr+l         
  KIR64402.1  39 WILAIVFLVVTVRVILFPVFVKQIKSQRAMQALQPKVKELQEKHKGDRETLQKEMMELYRKEKANPLMGCLPMFLQIPVFLGLFHVLRRLDpakinktl 137
                 89***************************************************************************************9999888777 PP

    60KD_IMP  92 ..............sfwikdLsapd................................lpillavttflqqkls.........kskkm.qkmmlyvmplm 134
                               +                                          l+++++ tt+l+++++         +++km q++mly +pl 
  KIR64402.1 138 ygwtveqfdsassaK---------LftapiagkfgstadelarlgangttvkviagiLVLVMMGTTYLTSRQMilktgwaedPQQKMvQRLMLYGIPLS 227
                 666666555544441.........0444444445556666666677789999999999999999999998888665555444335788*********** PP

    60KD_IMP 135 ilffslsfpaglvlYwlvsnllsiaqqlii 164
                 +l+ ++ fp+g+++Yw+++nl++++qq ++
  KIR64402.1 228 LLVSGAIFPIGVIIYWVTNNLFTLGQQQWV 257
                 ***************************987 PP

>> MFS_Mycoplasma  Mycoplasma MFS transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   6.3e-06      0.01      35      84 ..      32      82 ..      23     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.3e-06
  MFS_Mycoplasma 35 aatknWviiltvlillilvilivyalfgkevdtvakk.ekqtkteqtlskk 84
                     +  nW +il+++ l+++v +i++ +f k+++        q k++   +k+
      KIR64402.1 32 VIGTNWAWILAIVFLVVTVRVILFPVFVKQIKSQRAMqALQPKVKELQEKH 82
                    55679*************************875444325566666433333 PP

>> LAP1C  Lamina-associated polypeptide 1C (LAP1C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   6.9e-06     0.011     205     263 ..      35      92 ..      26     102 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.9e-06
                 XXXXX.XXXXXXXXXXXXXXXXXXGGGXXBSCHHHHHHHHHHHHHHHHSTTS-HHHHHH CS
       LAP1C 205 yksilllllvvavlllsvlsyysspaqqveknpAleaFlaqfkqLkdkfqgqsefLWkR 263
                 +++ ++l++v +v+ ++v+ +  + ++q++++ A++a + ++k+L++k++g  e L k 
  KIR64402.1  35 TNWAWILAIVFLVVTVRVILF-PVFVKQIKSQRAMQALQPKVKELQEKHKGDRETLQKE 92 
                 556665555555555555555.555699************************9999775 PP

>> DUF3382  Domain of unknown function (DUF3382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.5   1.1e-05     0.018      33      81 ..      32      81 ..      10      98 .. 0.80
   2 ?    1.2   0.2      0.28   4.6e+02      11      34 ..     181     203 ..     174     209 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
     DUF3382 33 vleprwglvaiavavvf.vgqLlrplllqalkarkklkkveskadgvlvl 81
                v+ ++w +++++v +v  v  +l p++++++k++++++ +++k+++ +++
  KIR64402.1 32 VIGTNWAWILAIVFLVVtVRVILFPVFVKQIKSQRAMQALQPKVKELQEK 81
                67789*99988776655055679********************9999875 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.28
     DUF3382  11 llalvlfvpilGlqleldgtrlvl 34 
                 ++a +l+++++G +    + +++l
  KIR64402.1 181 VIAGILVLVMMGTTYL-TSRQMIL 203
                 7899999999998543.3335555 PP

>> Peptidase_S49_N  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   8.7e-05      0.14      10      65 ..      40      97 ..      33     104 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.7e-05
  Peptidase_S49_N 10 laklvtlvvailvvv..vlivalaakkkkekgelevtkLneeykelkeeleealldee 65
                     ++ +v lvv + v++  v++ ++++++  +  + +v++L+e++k  +e+l++++++  
       KIR64402.1 40 ILAIVFLVVTVRVILfpVFVKQIKSQRAMQALQPKVKELQEKHKGDRETLQKEMMELY 97
                     55677777777777722344444555556777779*****************999743 PP

>> DUF3487  Protein of unknown function (DUF3487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2    0.0017       2.7      35      89 ..      21      76 ..      11      95 .. 0.78
   2 ?    9.0   0.4   0.00076       1.2      19      54 ..     163     198 ..     151     208 .. 0.87
   3 ?   -0.4   0.2      0.61   9.9e+02      39      61 ..     222     243 ..     214     260 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0017
     DUF3487 35 vglvlglllallvg.slaliptialllvllvvlvggkllarlKRgkPdtylyrrle 89
                ++ ++g+++ +++g ++a i++i++l+v + v++   +++++K ++  + l+ +++
  KIR64402.1 21 AWDAIGVPVDAVIGtNWAWILAIVFLVVTVRVILFPVFVKQIKSQRAMQALQPKVK 76
                5678899998887636**************************99987776665554 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00076
     DUF3487  19 GltadEllvlaglglvvglvlglllallvgslalip 54 
                 G tadEl+ l   g++v +++g+l+++++g+  l  
  KIR64402.1 163 GSTADELARLGANGTTVKVIAGILVLVMMGTTYLTS 198
                 99***************************9877765 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.61
     DUF3487  39 lglllallvgslaliptialllv 61 
                  g++l llv+  a++p ++++  
  KIR64402.1 222 YGIPLSLLVS-GAIFPIGVIIYW 243
                 5555555555.444444433332 PP

>> OSTbeta  Organic solute transporter subunit beta protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00019      0.31      33      89 ..      38      94 ..      35     107 .. 0.64
   2 ?    0.4   0.0      0.41   6.7e+02      18      34 ..      89     105 ..      87     127 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00019
     OSTbeta 33 pWnysiLvLsavvvvisvvLLarsiqanRnrKiqpqeketpealyleeakakennsl 89
                +W  +i+ L+++v vi +   +++i+ +R     +++ +  + +++ + ++ +++ +
  KIR64402.1 38 AWILAIVFLVVTVRVILFPVFVKQIKSQRAMQALQPKVKELQEKHKGDRETLQKEMM 94
                677788888888888888888999999998877744444444455544444444333 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.41
     OSTbeta  18 lleellWffRvEDaspW 34 
                 l +e++ ++R E a p 
  KIR64402.1  89 LQKEMMELYRKEKANPL 105
                 5689********99985 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.1   0.00018      0.29      39      71 ..      66      98 ..      58     102 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
       Tup_N 39 qElqqirqtlyeLeeahrkikqqYEeeiarLka 71
                + +q+++ +++eL+e+h+  +++ ++e+++L +
  KIR64402.1 66 RAMQALQPKVKELQEKHKGDRETLQKEMMELYR 98
                459**************************9965 PP

>> Baculo_11_kDa  Baculovirus 11 kDa family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.2    0.0035       5.8      36      69 ..      39      72 ..      37      82 .. 0.81
   2 ?    3.2   0.1      0.04        65      38      49 ..     180     191 ..     178     221 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0035
  Baculo_11_kDa 36 FvLvicglvvfvvivlfilLlvvilknaeaeeae 69
                   ++L i  lvv v ++lf +++ +i ++  ++  +
     KIR64402.1 39 WILAIVFLVVTVRVILFPVFVKQIKSQRAMQALQ 72
                   6888999999999******999999877766554 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.04
  Baculo_11_kDa  38 Lvicglvvfvvi 49 
                     vi+g++v+v++
     KIR64402.1 180 KVIAGILVLVMM 191
                    59********98 PP

>> Sm_multidrug_ex  Putative small multi-drug export protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3    0.0002      0.33       5      70 ..      26      90 ..      24     119 .. 0.77
   2 ?    0.7   0.0      0.48   7.8e+02      28      67 ..     112     150 ..     102     198 .. 0.67
   3 ?   -2.4   0.1       4.3     7e+03      25      43 ..     231     250 ..     216     261 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0002
  Sm_multidrug_ex  5 aiplgillgldpllallvsvlgnllpvplillflrkllellkkkkllkklfekleekaekksekie 70
                     ++p+ +++g ++++ l++ +l+ ++ v+l+ +f++++ +  + ++ l+  +++l+ek +  +e+++
       KIR64402.1 26 GVPVDAVIGTNWAWILAIVFLVVTVRVILFPVFVKQIKS-QRAMQALQPKVKELQEKHKGDRETLQ 90
                     799999****************************99988.45566678888888887777666664 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.48
  Sm_multidrug_ex  28 llpvplillflrkllellkkkkllkklfekleekaekkse 67 
                      +l++p++l +++ l++ l+  k+ k+l+ + +e+  + s+
       KIR64402.1 112 FLQIPVFLGLFHVLRR-LDPAKINKTLYGWTVEQFDSASS 150
                      5677777744433333.55667788888888887777433 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.3
  Sm_multidrug_ex  25 lgnllpvplil.lflrklle 43 
                       g + p+ +i+ ++ ++l++
       KIR64402.1 231 SGAIFPIGVIIyWVTNNLFT 250
                      23355554444233555554 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00023      0.38      21      62 ..      40      81 ..      32      83 .. 0.85
   2 ?   -1.1   0.1       1.1   1.8e+03      32      45 ..     185     198 ..     179     220 .. 0.55
   3 ?    4.1   0.8     0.025        41      17      50 ..     224     259 ..     219     261 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00023
    LapA_dom 21 llllvafgiGallgwllslwsylrlrrelrrlkkkikkleke 62
                +l +v++++ + ++++  ++++++ +r++++l+ k+k+l+++
  KIR64402.1 40 ILAIVFLVVTVRVILFPVFVKQIKSQRAMQALQPKVKELQEK 81
                66677777777788888889********************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.1
    LapA_dom  32 llgwllslwsylrl 45 
                 +l+++++  +yl  
  KIR64402.1 185 ILVLVMMGTTYLTS 198
                 33444444445533 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.025
    LapA_dom  17 lpLsllllvafg.iGallgwllslwsyl.rlrrelr 50 
                 +pLsll+ +a++ iG+++ w++  ++ l ++++ lr
  KIR64402.1 224 IPLSLLVSGAIFpIGVIIYWVTNNLFTLgQQQWVLR 259
                 7999999887555*******9988766657777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1494  (0.0833287); expected 358.6 (0.02)
Passed bias filter:                      988  (0.0551063); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 2296.17
//
Query:       KIR64403.1  [L=138]
Description: ribonuclease P [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-23   83.3   0.1    1.4e-23   83.0   0.1    1.1  1  Ribonuclease_P  Ribonuclease P


Domain annotation for each model (and alignments):
>> Ribonuclease_P  Ribonuclease P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.1   8.1e-28   1.4e-23       2     108 ..       3     128 ..       2     130 .. 0.84

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 8.1e-28
  Ribonuclease_P   2 pkkerLkkraeFqavfregkrvaskdlvlyalk...............nsleks........slrlGlsvskkvgkAvvRNrikRllReafrlnk 73 
                     + ++rL+++++F a +r g+r+++  lv++++                +    +         +r G++vsk+vg AvvRN ++R+lR+ +r+++
      KIR64403.1   3 AAAQRLRRSSDFAAAVRAGRRAGRGVLVVHLTLpgtpgtptdvspkpaR----TtaaehtsaATRAGFVVSKAVGPAVVRNVVRRRLRHLVRERL 93 
                     6789**************************6664444444444444440....03444456689******************************* PP

  Ribonuclease_P  74 delpagldlvviakkgaaeadfaelekelekllkk 108
                     + lp+g  lvv+a ++aaea+f++l ++l+++++ 
      KIR64403.1  94 AALPEGSTLVVRALPAAAEASFSRLGADLDAAIAT 128
                     ****************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 994.09
//
Query:       KIR64404.1  [L=45]
Description: 50S ribosomal protein L34 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-21   74.7  11.7    4.4e-21   74.6  11.7    1.0  1  Ribosomal_L34  Ribosomal protein L34


Domain annotation for each model (and alignments):
>> Ribosomal_L34  Ribosomal protein L34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6  11.7   2.5e-25   4.4e-21       2      44 .]       3      45 .]       2      45 .] 0.98

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 2.5e-25
                   --S----HHHHHCSSSHHHHHHSHHHHHHHHHHHTTSSS-SCC CS
  Ribosomal_L34  2 krtyqPskrkRkrkhGFraRmstknGrkvLkrRraKGRkrLsv 44
                   krtyqP++r+R+++hGFr Rm+t++Gr++++ RraKGR+rLs+
     KIR64404.1  3 KRTYQPNNRRRAKTHGFRLRMRTRAGRAIISTRRAKGRARLSA 45
                   9****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      150  (0.00836633); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 390.00
//
Query:       KIR64405.1  [L=631]
Description: chromosomal replication initiation protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-99  329.8   0.1    1.4e-98  329.2   0.1    1.3  1  Bac_DnaA      Bacterial dnaA  protein
    5.5e-30  103.2   0.0      1e-29  102.4   0.0    1.5  1  Bac_DnaA_C    Bacterial dnaA protein helix-turn-helix
    3.5e-13   49.7   0.0    6.6e-13   48.8   0.0    1.4  1  IstB_IS21     IstB-like ATP binding protein
    6.2e-07   29.9   0.0    1.5e-06   28.7   0.0    1.7  1  AAA           ATPase family associated with various cellular 
    0.00023   21.2   0.0    0.00042   20.3   0.0    1.4  1  AAA_14        AAA domain
    0.00024   20.8   0.0    0.00044   19.9   0.0    1.5  1  DnaA_N        DnaA N-terminal domain
     0.0029   17.6   0.0     0.0053   16.7   0.0    1.4  1  ATPase_2      ATPase domain predominantly from Archaea
     0.0043   17.4   0.0      0.009   16.4   0.0    1.5  1  RNA_helicase  RNA helicase
     0.0099   16.2   2.7        3.9    7.7   0.5    2.6  2  AAA_22        AAA domain
  ------ inclusion threshold ------
      0.017   15.5   0.3      0.079   13.3   0.0    2.1  2  AAA_16        AAA ATPase domain
      0.044   13.5   0.1       0.14   11.9   0.0    1.7  2  AAA_24        AAA domain
      0.057   13.4   0.6         22    4.9   0.4    3.2  3  Microtub_bd   Microtubule binding
       0.14   12.7   0.2       0.29   11.6   0.0    1.6  2  AAA_23        AAA domain


Domain annotation for each model (and alignments):
>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.2   0.1  9.8e-102   1.4e-98       1     218 [.     293     510 ..     293     511 .. 0.99

  Alignments for each domain:
  == domain 1  score: 329.2 bits;  conditional E-value: 9.8e-102
                 --SS-SGGG----TTTHHHHHHHHHHHHSTTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHTT-S CS
    Bac_DnaA   1 LnkrytFetFviGasnrlAlaaalkvaeapgkkynPlfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklrkvD 99 
                 Ln++y FetFviG+snr+A+aa+++vae p+k+ynPlfiyg++GlGktHLl+aig+++++  ++  v Y+++eeF+n++++++rd+k+++f++++r+vD
  KIR64405.1 293 LNPKYMFETFVIGSSNRFAHAASVAVAESPAKAYNPLFIYGSSGLGKTHLLHAIGHYATTLGNARSVRYVSTEEFTNDFINSVRDDKTSAFQRRYRDVD 391
                 899************************************************************************************************ PP

                 EEEEE-GGGGTT-HHHHHHHHHHHHHHHTTT-EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHHHHHHHTT----TTHHHHHHHH- CS
    Bac_DnaA 100 vLliDDiqflagkektqeelfhtfnalleegkqvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailkkkieaeklevpeevlefiaerv 198
                 +LliDDiqfl+++e+tqee+fhtfn+l++++kq+v++sDrsPk+l++ledrlr+rfe+Gl +di+ppdletr+ail+kk+ +e+l  p++vlefia+rv
  KIR64405.1 392 ILLIDDIQFLENRERTQEEFFHTFNTLHNANKQIVVTSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRIAILQKKAAQERLYAPPDVLEFIASRV 490
                 *************************************************************************************************** PP

                 -S-HHHHHHHHHHHHHHHHH CS
    Bac_DnaA 199 tdnvRelegalnrlkayasl 218
                 ++++Relegal+r++a+asl
  KIR64405.1 491 SNSIRELEGALIRVTAFASL 510
                 ****************9875 PP

>> Bac_DnaA_C  Bacterial dnaA protein helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   0.0   7.2e-33     1e-29       2      69 .]     539     606 ..     538     606 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.4 bits;  conditional E-value: 7.2e-33
                 .HHHHTHHHHTT--HHHHHS----CSSHHHHHHHHHHHHHTS---HHHHHHHHT-STTHHHHHHHHHH CS
  Bac_DnaA_C   2 ekIieaVaeyfgvsvedlkskkRkkeiveaRqiamylareltdlslpeIGkefggrdHsTVihaikki 69 
                 ++I+  +a+yfgvs edl++++R++ +v+aRq+amyl+reltdlslp+IG++fggrdH+TV+ha +ki
  KIR64405.1 539 DQIMVSTADYFGVSLEDLRGHSRSRVLVNARQVAMYLCRELTDLSLPRIGQAFGGRDHTTVMHADRKI 606
                 79999************************************************************998 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   4.8e-16   6.6e-13      49     153 ..     328     435 ..     301     442 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 4.8e-16
   IstB_IS21  49 nivllGpsGvGKshlaialgveavr..aglsvlfvrvedLveelkrarrdgklaralkrllkvdllilDdlgllpldqaeaellfeviekrye.rrsii 144
                  + + G sG GK+hl  a+g+ a +  +  sv++v++e++ +      rd+k +  ++r+  vd+l++Dd+ +l+  +  +e++f+  +   + ++ i+
  KIR64405.1 328 PLFIYGSSGLGKTHLLHAIGHYATTlgNARSVRYVSTEEFTNDFINSVRDDKTSAFQRRYRDVDILLIDDIQFLENRERTQEEFFHTFNTLHNaNKQIV 426
                 57899******************99556689**********************************************************9887367899 PP

   IstB_IS21 145 itsnlpfae 153
                 +ts+ + ++
  KIR64405.1 427 VTSDRSPKQ 435
                 ***988766 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   1.1e-09   1.5e-06       2     128 ..     330     447 ..     329     451 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1.1e-09
                 EEESSTTSSHHHHHHHHHHHH...T..HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel...g..vefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldg 95 
                  +yG  G GKT l +a+ + +   g  +++  +s  e++++++    ++    f++  +     il+iD+i  l ++         er+++++++ ++ 
  KIR64405.1 330 FIYGSSGLGKTHLLHAIGHYAttlGnaRSVRYVSTEEFTNDFINSVRDDKTSAFQRRYRD--VDILLIDDIQFLENR---------ERTQEEFFHTFNT 417
                 68******************854425578999999*******************995554..59*******999544.........599********** PP

                 TTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEE CS
         AAA  96 vkkkeskvivigatnrpdkldpallrgRfdrki 128
                 + + ++   +++++ r  k    l  +R+  ++
  KIR64405.1 418 LHNANK--QIVVTSDRSPKQLATLE-DRLRTRF 447
                 *99644..66777777555555555.5665555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.1e-07   0.00042       3     116 ..     327     446 ..     325     454 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.1e-07
      AAA_14   3 kilvitGaRrvGKTtllkqlikell..vkkesilyinldderdkkladpe.kllelileklkeekktylflDEiqev.......pewekalkslvdegk 91 
                 ++l+i G    GKT ll+ + +      +++s+ y++ ++ +++ ++  + +  +++++++ + +  +l++D iq +       +e++++ + l++   
  KIR64405.1 327 NPLFIYGSSGLGKTHLLHAIGHYATtlGNARSVRYVSTEEFTNDFINSVRdDKTSAFQRRY-R-DVDILLIDDIQFLenrertqEEFFHTFNTLHN--A 421
                 6789*************9998766688999**********888655543314556666665.4.6899*********5555554455555555554..3 PP

      AAA_14  92 nldvivtGSnskllskeiatslagr 116
                 n +++vt   s   +  ++++l+ r
  KIR64405.1 422 NKQIVVTSDRSPKQLATLEDRLRTR 446
                 4689998877777777777777666 PP

>> DnaA_N  DnaA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.2e-07   0.00044       2      63 ..       9      70 ..       8      71 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.2e-07
      DnaA_N  2 elWsavlerLkkelgeqsfdtWikplklfalknngltlivpneFardwiesnYldriaellk 63
                ++W a  ++L +e+  ++ + +++ ++l+a+ +++  l+vp  F rd ies+    i+e+l+
  KIR64405.1  9 AVWTATTDELADEIISAQQRAYLRLTRLRAIVEDTALLSVPDAFTRDVIESRLRPAITEALT 70
                69*****************************9999*********************999986 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.8e-06    0.0053      19     125 ..     325     430 ..     319     444 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.8e-06
    ATPase_2  19 pneiyfiYGpegsGKtaLlkeiienledkdk..yviyyi..alreesiskldefieeeeekkklekalgiavpkaeleeilk.eksklvfkaielllek 112
                  ++++fiYG+ g GKt Ll  i      ++    v y++  ++ +++i+++++       k+++ +    +v    ++ i   e+++  ++ +   ++ 
  KIR64405.1 325 AYNPLFIYGSSGLGKTHLLHAIGHYATTLGNarSVRYVSteEFTNDFINSVRDD------KTSAFQRRYRDVDILLIDDIQFlENRERTQEEFFHTFNT 417
                 5799****************9988887777643444443113334444444443......444444444555555555554457777778888888888 PP

    ATPase_2 113 ikkkgkkiiiiiD 125
                 + +  k+i++  D
  KIR64405.1 418 LHNANKQIVVTSD 430
                 8888888888766 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   6.5e-06     0.009       1      90 [.     329     432 ..     329     439 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6.5e-06
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl...........klkkkdsvys...rnpeddfwdgYtgqevvvidDfgqvkdee.nps.dlaelirlvsstp 81 
                   +++yG+sg GK++l + + +  + +l           + + +++++      +++ f   Y++ ++++idD+   +++e +++  +++++ l + ++
    KIR64405.1 329 LFIYGSSGLGKTHLLHAIGHYAT-TLgnarsvryvstE-EFTNDFINsvrDDKTSAFQRRYRDVDILLIDDIQFLENRErTQEeFFHTFNTLHNANK 423
                   589**************655555.44577889999962.44444433243567777889*************9999888777768899999999999 PP

  RNA_helicase  82 yplnmasle 90 
                    ++ + + +
    KIR64405.1 424 QIVVTSDRS 432
                   888777655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0035       4.9       8      27 ..     329     348 ..     324     372 .. 0.82
   2 !    7.7   0.5    0.0028       3.9      85     118 ..     382     421 ..     373     432 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0035
      AAA_22   8 lvvtGesGtGKTtllrrlle 27 
                 l+++G sG GKT+ll  + +
  KIR64405.1 329 LFIYGSSGLGKTHLLHAIGH 348
                 79************987765 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0028
      AAA_22  85 alrarav.ielliiDEaqhlr...s..eealeeLrsllnl 118
                 a+++r++ + +l+iD++q+l    +  ee + ++ +l+n 
  KIR64405.1 382 AFQRRYRdVDILLIDDIQFLEnreRtqEEFFHTFNTLHNA 421
                 5566666789**********87651568888888888884 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.2   4.4e+03      66     127 ..      42      69 ..      12     109 .. 0.54
   2 ?   13.3   0.0   5.7e-05     0.079      23      94 ..     321     384 ..     308     431 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.2
      AAA_16  66 aipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasrllellkrll 127
                 +++++ + +a++r ++++  l++                                 +++++l
  KIR64405.1  42 DTALLSVPDAFTR-DVIESRLRP---------------------------------AITEAL 69 
                 3333333333322.333333333.................................222222 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 5.7e-05
      AAA_16  23 rp....elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesael 94 
                 +p    + ++++G sG GK+ l+ ++ +++++       g++++      +++ ++ +++ ++++ + d+++sa +
  KIR64405.1 321 SPakayNPLFIYGSSGLGKTHLLHAIGHYATTL------GNARSV-----RYVSTEEFTN-DFINSVRDDKTSAFQ 384
                 344456899***************999766644......333333.....1134444433.555555555555444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.9e-05      0.14       5      77 ..     329     401 ..     326     408 .. 0.74
   2 ?   -1.9   0.0       1.6   2.3e+03     107     130 ..     407     430 ..     405     440 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.9e-05
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel.....aaeladyktlviDtidel 77 
                 ++iyG+sg GKT+l+  +g  +  +   ++++ +   +f      +df++ v  +     ++ ++d ++l iD i+ l
  KIR64405.1 329 LFIYGSSGLGKTHLLHAIGHYATTLGNARSVRYVSTEEFT-----NDFINSVRDDktsafQRRYRDVDILLIDDIQFL 401
                 68****************5555555555567666666666.....566666666666667889999999999988755 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.6
      AAA_24 107 laeefrrllkklqelrknvifiah 130
                  +eef  + ++l++++k++++++ 
  KIR64405.1 407 TQEEFFHTFNTLHNANKQIVVTSD 430
                 578999999***********9986 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.039        54      80     102 ..     324     345 ..     292     381 .. 0.77
   2 ?    0.1   0.0      0.49   6.8e+02      10      29 ..     489     509 ..     485     535 .. 0.80
   3 ?    4.9   0.4     0.016        22       2      22 ..     607     627 ..     606     629 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.039
                  TT--EEEEEEES........... CS
  Microtub_bd  80 dgynvcifaygqTGsGKtyTmeg 102
                  + yn  +f yg+ G GKt+ +++
   KIR64405.1 324 KAYN-PLFIYGSSGLGKTHLLHA 345
                  4455.589***********9877 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.49
                  HCHHHHHHHCTB.-EEEEEEE CS
  Microtub_bd  10 kleNtiqelkGn.iRvfarvr 29 
                  ++ N+i el G  iRv a  +
   KIR64405.1 489 RVSNSIRELEGAlIRVTAFAS 509
                  578********7689977655 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.016
                  HHHHHHHHHCHHHHHHHCTB- CS
  Microtub_bd   2 ekeetlRrkleNtiqelkGni 22 
                  +++ ++Rr l+N+i el   i
   KIR64405.1 607 RQQMAERRSLYNQIAELTNRI 627
                  78899***********97666 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00021      0.29      23     107 ..     330     413 ..     327     517 .. 0.68
   2 ?   -2.5   0.1       4.3   5.9e+03     172     194 ..     607     629 ..     595     631 .] 0.51

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
      AAA_23  23 lItGpNGaGKTTildAik.laLygetprlsrksgrgfeksdveiesegkvkay.veltfenkdgrytrsier.erelskkkgkttkka 107
                  I+G  G GKT +l Ai  +a++   +r  r  ++  +++d+  +  +++k++ +++++++ d      i++ ++ ++++ +++  + 
  KIR64405.1 330 FIYGSSGLGKTHLLHAIGhYATTLGNARSVRYVSTEEFTNDFINSV-RDDKTSaFQRRYRDVDILL---IDDiQFLENRERTQEEFFH 413
                 59***************76999876667776667777777775444.4555665777777766643...2221222222222222222 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.3
      AAA_23 172 lekleqekekekeleeleeelee 194
                  ++  ++ +  +++ el +++++
  KIR64405.1 607 RQQMAERRSLYNQIAELTNRIKQ 629
                 23334444444455555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.48
# Mc/sec: 3937.10
//
Query:       KIR64406.1  [L=377]
Description: DNA polymerase III subunit beta [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-41  139.9   0.0    2.6e-34  117.9   0.0    2.4  2  DNA_pol3_beta    DNA polymerase III beta subunit, N-terminal 
    1.2e-31  109.3   0.0    2.7e-27   95.3   0.0    2.5  3  DNA_pol3_beta_2  DNA polymerase III beta subunit, central dom
    2.2e-28   98.5   0.0    1.2e-24   86.5   0.0    2.9  3  DNA_pol3_beta_3  DNA polymerase III beta subunit, C-terminal 


Domain annotation for each model (and alignments):
>> DNA_pol3_beta  DNA polymerase III beta subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   0.0   4.3e-38   2.6e-34       1     121 []       1     118 [.       1     118 [. 0.99
   2 !   19.5   0.0   1.4e-07   0.00081       5      82 ..     127     206 ..     126     224 .. 0.83

  Alignments for each domain:
  == domain 1  score: 117.9 bits;  conditional E-value: 4.3e-38
                    -EEEEEHHHHHHHHHHHHTTSSSTTSSGGGGEEEEEEETTEEEEEEE-SSEEEEEEEESEEEEE-EEEEEEHHHHHHHHHHSSTTSEEEEEEETTE CS
  DNA_pol3_beta   1 mkftiereellkelekvakvisnRntlpiLsgvllevkdsqlsltgtDleisiestisaeseeeegkvlvparllldivkaLpndkkvkisvneqk 96 
                    mkf++er++l+++++++ak+++nR+ +p+L+gv+l v+d +l ++g+D+e+s ++t++ + +  +g+ lv++rll++i+kaLp  k+v+i   +++
     KIR64406.1   1 MKFRVERDALAEAVAWTAKSLPNRPSVPVLAGVMLRVTDGNLQVSGFDYEVSSQVTVEVQGD-ADGAALVSGRLLAEITKALPA-KPVDIAAVGAH 94 
                    9*************************************************************.99*******************.*********** PP

                    EEEEEETTEEEEEE-BEGGGS---- CS
  DNA_pol3_beta  97 lliiksgssrfslstlsaeeypnlp 121
                    l+++ +gs+rf+l+t+++e+yp+lp
     KIR64406.1  95 LELV-CGSARFTLPTMPVEDYPALP 118
                    ****.*****************997 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.4e-07
                    EEHHHHHHHHHHHHTTSSSTTSSGGGGEEEEEEETTEEEEEEE-SSEEEEEEEESEEE..EE-EEEEEEHHHHHHHHHHS CS
  DNA_pol3_beta   5 iereellkelekvakvisnRntlpiLsgvllevkdsqlsltgtDleisiestisaese..eeegkvlvparllldivkaL 82 
                    +  ++++ ++++va +  + +tlp+++gv +e +  +l + +tD+   +  +++ + +  e + + lvpar+l d  kaL
     KIR64406.1 127 VDAAAFAAAVAQVAVAAGRDETLPMMTGVRIELSGGNLAMLATDRYRLALREMEWHPDdpEVSINALVPARTLHDTAKAL 206
                    56678999************************************8766666666555544788889************99 PP

>> DNA_pol3_beta_2  DNA polymerase III beta subunit, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   4.4e-05      0.26       2     106 ..       5     105 ..       4     112 .. 0.87
   2 !   95.3   0.0   4.5e-31   2.7e-27       2     115 ..     127     247 ..     126     248 .. 0.96
   3 ?   -2.7   0.0       1.1   6.8e+03       3      20 ..     264     281 ..     262     301 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.4e-05
                      EEHHHHHHHHHCCGGGS-SSTTSGGGGEEEEEEECCEEEEEEE-SSEEEEEEEEEEECTTCEEEEEEEHHHHHHHHHHHTSSSSEEEEEEESSE CS
  DNA_pol3_beta_2   2 lkqkelkelieqvafaasedetrpvLtGvrleieedklllaaTdghRlavrkleleeeeedeasvivPaktlaelaklledneeqvklalsegk 95 
                      ++ ++l+e+++ +a +  +  + pvL Gv l++++ +l+++  d    +++++e++  ++   + +v  + lae++k+l    + v++a    +
       KIR64406.1   5 VERDALAEAVAWTAKSLPNRPSVPVLAGVMLRVTDGNLQVSGFDYEVSSQVTVEVQGDAD--GAALVSGRLLAEITKALPA--KPVDIAAVGAH 94 
                      67899**********************************999997777777777776666..699**************98..89999988888 PP

                      EEEEETTEEEE CS
  DNA_pol3_beta_2  96 irfevgnvrlt 106
                      + + +g +r+t
       KIR64406.1  95 LELVCGSARFT 105
                      88877777776 PP

  == domain 2  score: 95.3 bits;  conditional E-value: 4.5e-31
                      EEHHHHHHHHHCCGGGS-SSTTSGGGGEEEEEEECCEEEEEEE-SSEEEEEEEEEEECTTC.EEEEEEEHHHHHHHHHHHTSSSSEEEEEEE.. CS
  DNA_pol3_beta_2   2 lkqkelkelieqvafaasedetrpvLtGvrleieedklllaaTdghRlavrkleleeeeed.easvivPaktlaelaklledneeqvklals.. 92 
                      +++ +++ +++qva+aa++det+p++tGvr+e+++ +l + aTd++Rla+r++e++   ++ +++ +vPa+tl ++ak+l   +++v++als  
       KIR64406.1 127 VDAAAFAAAVAQVAVAAGRDETLPMMTGVRIELSGGNLAMLATDRYRLALREMEWHPDDPEvSINALVPARTLHDTAKALGPLGGHVTMALSqg 220
                      78899***************************************************************************************99 PP

                      ...SSEEEEEETTEEEEEE-BSS.--- CS
  DNA_pol3_beta_2  93 ...egkirfevgnvrltsrlldg.kfP 115
                         eg i+f+ g +r+tsrlldg ++P
       KIR64406.1 221 aagEGMIGFSGGTRRTTSRLLDGaNYP 247
                      99999*****************94576 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.1
                      EHHHHHHHHHCCGGGS-S CS
  DNA_pol3_beta_2   3 kqkelkelieqvafaase 20 
                      + ++l+e++++va+ a++
       KIR64406.1 264 AVSTLIEVVKRVALVAER 281
                      556777777777765544 PP

>> DNA_pol3_beta_3  DNA polymerase III beta subunit, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.11   6.7e+02      35      69 ..      31      66 ..       4      86 .. 0.83
   2 !    7.9   0.0   0.00042       2.5       4      51 ..     117     169 ..     115     179 .. 0.78
   3 !   86.5   0.0     2e-28   1.2e-24       1     120 [.     250     373 ..     250     374 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.11
                     GEEEEEEETTEEEEEEEETTSEEEEE.EEEEBEESS CS
  DNA_pol3_beta_3 35 rkvrLsleegqlklsaensevgeaeE.evdvnyeGe 69
                     ++v L +++g+l++s+ + ev +++  ev+ + +G+
       KIR64406.1 31 AGVMLRVTDGNLQVSGFDYEVSSQVTvEVQGDADGA 66
                     5799999********999999876654555555555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00042
                      S-SS-SEEEEEEHHHHHHHHHHHHTTSS.TS....TGEEEEEEETTEEEEEEE CS
  DNA_pol3_beta_3   4 lPkefkkkvtvdlkelkealkRvallad.ek....nrkvrLsleegqlklsae 51 
                      lP+  +++ tvd +++++a++ va+ a  +      ++vr++l+ g+l++ a+
       KIR64406.1 117 LPEMPESTGTVDAAAFAAAVAQVAVAAGrDEtlpmMTGVRIELSGGNLAMLAT 169
                      899999*******************9953222222467888888888877776 PP

  == domain 3  score: 86.5 bits;  conditional E-value: 2e-28
                      CCCS-SS-SEEEEEEHHHHHHHHHHHHTTSSTSTGEEEEEEETTEEEEEEEETTSEEEEEEEEEBEESS-EEEEEEHHHHHHHHHHH-SSEEEE CS
  DNA_pol3_beta_3   1 krllPkefkkkvtvdlkelkealkRvalladeknrkvrLsleegqlklsaensevgeaeEevdvnyeGeeleiafNvsYlldalkaleteevel 94 
                      ++l+P+ +++++ + +  l e++kRval+a e+ + v Ls++ + l ++a+ +e ++a E+++++++G++l+i+fN++Yl+d+l+ l  + ++l
       KIR64406.1 250 RSLFPASHNAEARLAVSTLIEVVKRVALVA-ERTTPVLLSFSSDGLVVEAGGTEEARASEAMEATFTGDPLTIGFNPQYLIDGLANLGAQFAQL 342
                      589***************************.8************************************************************** PP

                      EESSTTS-EEEEETTEES.....EEEEE--B CS
  DNA_pol3_beta_3  95 qltdstkpvllsevedes.....vkyvilpm 120
                       + d++kp+++s+++++        y+i+p+
       KIR64406.1 343 AFVDAFKPAVISPAGEDGevipgYRYLIMPI 373
                      *************998742222256777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2538.80
//
Query:       KIR64407.1  [L=290]
Description: 6-phosphogluconate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-34  118.0   0.2    9.8e-34  116.8   0.2    1.6  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
    5.2e-23   81.8   0.0    6.8e-23   81.5   0.0    1.2  1  6PGD           6-phosphogluconate dehydrogenase, C-terminal d
    3.1e-05   23.4   0.0      5e-05   22.7   0.0    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
     0.0003   21.3   0.1     0.0011   19.4   0.1    2.1  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.066   13.1   0.0       0.12   12.2   0.0    1.4  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
       0.14   12.4   0.0       0.27   11.5   0.0    1.4  1  TrkA_N         TrkA-N domain
       0.16   11.6   0.2        0.7    9.5   0.2    2.0  1  ApbA           Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.2   3.8e-37   9.8e-34       1     149 [.       2     142 ..       2     152 .. 0.91

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 3.8e-37
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE-S---HHH CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdeviegllealkkgdilidgstssped 96 
                    ++g++GlG MG nm ++l +ag++v++y+r++++ +      ++ +++++e +++ ++v++mv+ag  +d++i+ ++e+l  gdi+idg++s ++d
     KIR64407.1   2 QLGLVGLGRMGGNMRERLRAAGHEVVGYDRNADRSD------VTSLAELAEKLDGPRAVWVMVPAG-VTDTTIDAVAEHLGDGDIIIDGGNSRFSD 90 
                    589****************************66654......33455555555566*********7.68*************************** PP

                    HHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHH CS
  NAD_binding_2  97 trelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleai 149
                       +a++l+ +g+ +ld++VSGG++g e+G  ++mvGG +e ++r+ p++ea+
     KIR64407.1  91 DAPRAERLATRGIGYLDVGVSGGVWGKENGY-ALMVGGAQEHVDRLMPIFEAL 142
                    *******************************.******************986 PP

>> 6PGD  6-phosphogluconate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   2.7e-26   6.8e-23       1     118 [.     159     269 ..     159     289 .. 0.87

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 2.7e-26
        6PGD   1 GhyVKmvHNGieygdmqliaEaydllkkvlglsneeiaevFeeWnkgel.esyLieitakilrkkdeedgkplvdkilDkagqkGTgkwtvqealelgv 98 
                 Ghy KmvHNGieyg m + aE y+ll+k      +++  vF++W +g++ +s+L++   + l ++ +      +      ++  G g+wtv ea++l v
  KIR64407.1 159 GHYAKMVHNGIEYGLMHAYAEGYELLTKSE--LVTNVPGVFKSWREGTVvQSWLLDLLDRALDEDPD------LSDLSGYTEDTGEGRWTVDEAIRLAV 249
                 9**************************975..456799*********655*********99997665......56678999999*************** PP

        6PGD  99 pvptiaeavfaRllSslkee 118
                 p+++ia+++faR+ S +++ 
  KIR64407.1 250 PLNVIAASLFARFTSRQEDS 269
                 ***************99875 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0     2e-08     5e-05      38     100 ..       2      59 ..       1      84 [. 0.78

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2e-08
                   EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S- CS
  2-Hacid_dh_C  38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlp 100
                   ++G++GlGr+G ++ +rl+a g +v++ydr+ ++++       +l++l e l     v +++p
    KIR64407.1   2 QLGLVGLGRMGGNMRERLRAAGHEVVGYDRNADRSD-----VTSLAELAEKLDGPRAVWVMVP 59 
                   79*****************************88554.....2345666666666666666666 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   4.5e-07    0.0011       2      92 ..       3      81 ..       2      86 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.5e-07
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEE CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlselakdalkgklvi 92
                   +g++G G+mg  + ++l aag   he+v + +rn ++ + +  +        + +e ++    v + v+  +++ +++++a+++  g ++i
     KIR64407.1  3 LGLVGLGRMGGNMRERLRAAG---HEVV-GYDRNADRSDVTSLA--------ELAEKLDGPRAVWVMVPAGVTDTTIDAVAEHLGDGDIII 81
                   799******************...****.*9****987655322........223334444444555555555555555555555555555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.7e-05      0.12       2      35 ..       3      36 ..       2      53 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.7e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseeal 35
                ++ +G G mG  + + + +ag+eVv +d+++++ 
  KIR64407.1  3 LGLVGLGRMGGNMRERLRAAGHEVVGYDRNADRS 36
                688**************************98865 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0001      0.27       3      33 ..       5      35 ..       4      54 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
                EES-SHHHHHHHHHHHH.TTEEEEEEESSHHH CS
      TrkA_N  3 iiGlGrvGrslaeeLse.ggkdvvvidkdeer 33
                ++GlGr+G ++ e+L++ g+ +vv+ d++ +r
  KIR64407.1  5 LVGLGRMGGNMRERLRAaGH-EVVGYDRNADR 35
                69***************666.6******9987 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00027       0.7       3      34 ..       5      37 ..       3      81 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00027
                EES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHH CS
        ApbA  3 ilGaGaiGsllaakLakagadvtlilrsr.rle 34
                 +G+G +G+ +  +L +ag++v+ ++r++ r +
  KIR64407.1  5 LVGLGRMGGNMRERLRAAGHEVVGYDRNAdRSD 37
                69*************************997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2111.04
//
Query:       KIR64408.1  [L=377]
Description: recombinase RecF [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-17   64.3   0.0    1.8e-17   63.5   0.0    1.3  1  SMC_N           RecF/RecN/SMC N terminal domain
    2.4e-08   34.7   0.0    3.2e-08   34.3   0.0    1.2  1  AAA_23          AAA domain
      6e-07   29.5   0.0    7.6e-07   29.2   0.0    1.1  1  AAA_15          AAA ATPase domain
    9.2e-07   29.0   0.0    1.8e-05   24.7   0.0    2.1  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    0.00089   18.9   0.0     0.0019   17.9   0.0    1.5  1  AAA_29          P-loop containing region of AAA domain
     0.0011   18.4   0.0     0.0015   17.9   0.0    1.1  1  DUF2813         Protein of unknown function (DUF2813)
     0.0018   18.7   0.8       0.37   11.1   0.0    2.3  2  AAA_16          AAA ATPase domain
  ------ inclusion threshold ------
      0.087   12.9   0.1       0.41   10.7   0.1    2.3  1  Unstab_antitox  Putative addiction module component
      0.089   13.0   1.0       0.19   11.9   0.0    2.0  2  AAA_28          AAA domain
       0.12   12.5   0.1       0.27   11.4   0.1    1.8  2  AAA_33          AAA domain
       0.14   11.9   0.1       0.27   10.9   0.1    1.4  1  IstB_IS21       IstB-like ATP binding protein


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.0   1.1e-20   1.8e-17       1     196 [.       2     351 ..       2     358 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 1.1e-20
                 EEEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   1 vlkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsi 99 
                 +++rle+ +F+sy  ++v ++++++ +++vG+NG GK+nl++A+ +v    s    r ++   l+    + ++v ++ v+     +++       e+ +
  KIR64408.1   2 YVRRLELVDFRSY--ERVAVDLEPGPNVLVGANGTGKTNLVEALGYVATLGSH---RVATDAPLVRL-GATSAVIRCAVAH----DGR-------ELLV 83 
                 689**********..7******************************9886566...999999****8.7788888888876....455.......59** PP

                 EEEEETTSEEEEEETTEEE-H.HHHHHHHHCTT-STT.............................................................. CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx.............................................................. RF
       SMC_N 100 srrvkrkgeseykingkevtk.kevsellesagiske.............................................................. 135
                 + +++ ++ ++ ++ ++ +++ ++v   l+++ + +e                                                              
  KIR64408.1  84 ELEIVPGKANRARLGRSPARRaRDVLGALRMVLFAPEdlelvrgdpaerrrylddllvsrqpryagvradyervvkqrnallrtaylarktggsrggdl 182
                 *******************9989**************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  KIR64408.1 183 stlavwdthlarhgaellagrlelvaalgphvtkaydavaagkgaagityrpsveltdpvadraalaetllaalaesrsaevergttlvgphrddlalt 281
                 *************************************************************************************************** PP

                 ........CS-HHHHHHHHHHHHHH....HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE- CS
                 ........xxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 ........lLSgGektLvalaLlfA....iqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivis 196
                         + S Ge    alaL++A    +++   +p+ +lD++ a+LD+ +++++a l+  +s   Q++v++
  KIR64408.1 282 lgplpakgYASHGESWSFALALRLAgydlLRSDGIEPVLVLDDVFAELDAGRRERLAGLVGGAS---QLLVTC 351
                 *************************99988888899************************9888...999887 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0     2e-11   3.2e-08       1      45 [.       5      49 ..       5      87 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 2e-11
      AAA_23  1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLyg 45
                +L++  frs++++ +d+++g ++++G NG+GKT +++A+ ++ + 
  KIR64408.1  5 RLELVDFRSYERVAVDLEPGPNVLVGANGTGKTNLVEALGYVATL 49
                688999**********************************98764 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   4.6e-10   7.6e-07       1      45 [.       1      45 [.       1      58 [. 0.93

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 4.6e-10
      AAA_15  1 MkIkkikikNFRslkdveidlseeltvliGkNnsGKSsilealdl 45
                M+++++++  FRs++ v +dl++  +vl+G+N++GK++++eal +
  KIR64408.1  1 MYVRRLELVDFRSYERVAVDLEPGPNVLVGANGTGKTNLVEALGY 45
                9999999***********************************965 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.1e-08   1.8e-05       2      25 ..      26      49 ..      26      96 .. 0.83
   2 ?    2.1   0.0     0.087   1.4e+02     249     295 ..     309     350 ..     298     351 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.1e-08
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl 25
                nvl+G+Ng+GK+nL +al ++a l
  KIR64408.1 26 NVLVGANGTGKTNLVEALGYVATL 49
                8*****************999654 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.087
      AAA_21 249 tallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvilt 295
                  +l ++  + ++l++D++ + L+  + +rl++l+     + +Q+++t
  KIR64408.1 309 DLLRSDGIE-PVLVLDDVFAELDAGRRERLAGLV----GGASQLLVT 350
                 445555555.*********************999....444666666 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.1e-06    0.0019       2      47 ..       4      48 ..       3      56 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-06
      AAA_29  2 krlqlvNWgtfdghtieidlkgatlltGpsGsGKSTllDAiqalLv 47
                +rl+lv+  ++++  +++++    +l+G++G+GK+ l+ A+ ++ +
  KIR64408.1  4 RRLELVDFRSYERVAVDLEPGP-NVLVGANGTGKTNLVEALGYVAT 48
                799***************9776.99***************998865 PP

>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   9.1e-07    0.0015       1      45 [.       1      46 [.       1      52 [. 0.92

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 9.1e-07
     DUF2813  1 myLerieisGFRGinrLSlslee.ntvLiGENaWGKSSLldALsli 45
                my +r+e++ FR  +r  + le+  +vL+G N  GK  L++AL  +
  KIR64408.1  1 MYVRRLELVDFRSYERVAVDLEPgPNVLVGANGTGKTNLVEALGYV 46
                9*********************8459****************9765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00023      0.37       5      45 ..       4      44 ..       1     146 [. 0.69
   2 !    6.3   0.1    0.0068        11      78     164 ..     249     346 ..     190     353 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
      AAA_16  5 ReeeleqLlsalervrsgrpelvllsGesGvGKsslvrell 45
                R+ el  ++s+ + + + +p+  +l+G+ G+GK+ lv++l 
  KIR64408.1  4 RRLELVDFRSYERVAVDLEPGPNVLVGANGTGKTNLVEALG 44
                6666666666666666777766679************9986 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0068
      AAA_16  78 reellrqllde......aesaeleawrekleeala..avpelagaea......srllellkrll.allsrderplvlvlDdlq.wadeaslqllaaLlr 160
                 +e+ll++l++         +++++++r+ l  +l+  +  +             +++ +l+ +  +ll++d+   vlvlDd+   +d++ ++ la L+ 
  KIR64408.1 249 AETLLAALAESrsaeveRGTTLVGPHRDDLALTLGplP--AKG---YashgesWSFALALRLAGyDLLRSDGIEPVLVLDDVFaELDAGRRERLAGLVG 342
                 22333333322222233223344444444444444442..322...133366799999999999******9999******9654788888888888887 PP

      AAA_16 161 lles 164
                  +++
  KIR64408.1 343 GASQ 346
                 7665 PP

>> Unstab_antitox  Putative addiction module component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00025      0.41       3      26 ..     241     264 ..     241     268 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00025
  Unstab_antitox   3 ppaERleLaedLwdSLdeeadpel 26 
                     p+a+R++Lae L++ L+e+   e+
      KIR64408.1 241 PVADRAALAETLLAALAESRSAEV 264
                     89***************9544445 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.19       3      20 ..      27      44 ..      26      62 .. 0.82
   2 ?   -2.2   0.2       2.7   4.4e+03     104     135 ..     130     164 ..     111     173 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
      AAA_28  3 vitGgestGKTtlleaLa 20
                v++G+ +tGKT l+eaL 
  KIR64408.1 27 VLVGANGTGKTNLVEALG 44
                89**************97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.7
      AAA_28 104 arekrydlvfllppapei...dddgeRredleere 135
                 a+++ry   +l+   p +   + d eR  +++++ 
  KIR64408.1 130 AERRRYLDDLLVSRQPRYagvRADYERVVKQRNAL 164
                 55666655555555554424466666655555544 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00017      0.27       3      33 ..      27      69 ..      26     177 .. 0.79
   2 ?   -3.7   0.0       7.4   1.2e+04      82     109 ..     331     356 ..     320     358 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
      AAA_33  3 llvGlpGsGKstlaerl..lkklgavllssdt..........l 33
                +lvG++G+GK+ l+e l  ++ lg  ++++d+          +
  KIR64408.1 27 VLVGANGTGKTNLVEALgyVATLGSHRVATDAplvrlgatsaV 69
                689************9877888999999999855555555541 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.4
      AAA_33  82 rrerarflklarrlgvpvrivvvetdee 109
                 + +r+r+  l+   g+  ++v++ +d++
  KIR64408.1 331 AGRRERLAGLVG--GASQLLVTCAVDDD 356
                 556778888887..77888888888876 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00017      0.27      51      78 ..      27      54 ..      23      59 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
   IstB_IS21 51 vllGpsGvGKshlaialgveavraglsv 78
                vl+G  G+GK+ l  alg+ a    ++v
  KIR64408.1 27 VLVGANGTGKTNLVEALGYVATLGSHRV 54
                79****************9998776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2647.12
//
Query:       KIR64409.1  [L=228]
Description: Zn-ribbon-containing RNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-25   88.1   0.7    6.3e-25   87.4   0.7    1.4  1  DciA      Dna[CI] antecedent, DciA


Domain annotation for each model (and alignments):
>> DciA  Dna[CI] antecedent, DciA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   0.7   3.5e-29   6.3e-25       1      89 []     116     203 ..     116     203 .. 0.97

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 3.5e-29
        DciA   1 slgdllerllskrglkkkalalarllqaWeeivGpelaahcrpvklrdgtLvvevesgawateLryqkpqllerlneelgeeavrriri 89 
                 +lg +l+rl+++rg++ +++a+a+++ aWe++vGpe+a+++rpvkl+dg+L+ve+ s+awat+Lr+++++ll+++++e+g+++vr++ i
  KIR64409.1 116 PLGVVLGRLMKARGWE-QPAAEATVFGAWERVVGPEVAQNSRPVKLEDGELTVEARSTAWATQLRLLAASLLRQIASEVGHNVVRKLHI 203
                 58889***********.8********************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1474.49
//
Query:       KIR64410.1  [L=184]
Description: hypothetical protein TK50_01600 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1259.03
//
Query:       KIR64411.1  [L=648]
Description: DNA gyrase subunit B [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-59  198.3   0.2      1e-58  197.6   0.2    1.3  1  DNA_gyraseB    DNA gyrase B
    1.8e-27   95.3   0.0    3.4e-27   94.4   0.0    1.5  1  DNA_gyraseB_C  DNA gyrase B subunit, carboxyl terminus
    1.7e-19   70.4   0.0    3.4e-19   69.4   0.0    1.6  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
    2.2e-16   59.9   0.0    4.3e-16   59.0   0.0    1.5  1  Toprim         Toprim domain


Domain annotation for each model (and alignments):
>> DNA_gyraseB  DNA gyrase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.6   0.2   2.3e-62     1e-58       1     173 [.     229     397 ..     229     398 .. 0.98

  Alignments for each domain:
  == domain 1  score: 197.6 bits;  conditional E-value: 2.3e-62
  DNA_gyraseB   1 GlkdfveelnkdkkelikevlsvegekaveevievevalqwtssysenilsFvNniatpeGGtHvdgfksaltktlneyakkkkllkkkeekisgedi 98 
                  G++dfv++ln++k++++k+v+++ +e+  e  + ve+a+qw++sy e++++F+N+i+t+eGGtH++gf++alt+++n+y  +kkllk +e k+sgedi
   KIR64411.1 229 GIADFVRHLNASKNPIHKTVVEFGAEE--EG-MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGADKKLLKGDE-KLSGEDI 322
                  99***********************99..77.*****************************************************99988.******* PP

  DNA_gyraseB  99 regltavvsvkipepqFeGQTKekLgnsevksivekvvseeleafleenkeeakkilekaveaakareaarkare 173
                  regl a++svk+++pqFeGQTK+kLgn+ vks+v++v +e l  ++++n+ eak i+ ka +aa+ar+aa++ar+
   KIR64411.1 323 REGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKIIITKASQAARARIAAQQARK 397
                  ************************************************************************996 PP

>> DNA_gyraseB_C  DNA gyrase B subunit, carboxyl terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.0   7.6e-31   3.4e-27       5      63 .]     579     637 ..     575     637 .. 0.97

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 7.6e-31
  DNA_gyraseB_C   5 eiqRfKGLGEmnpeqLweTTmdpetRrLlqvtiedaeeadelfstLmGkkvepRrefie 63 
                    +iqRfKGLGEmn  +LweTTm+p+tR+L qvt++da+ adelfs+LmG++ve+Rr+fi+
     KIR64411.1 579 DIQRFKGLGEMNYPELWETTMNPATRTLRQVTLDDAAVADELFSVLMGEDVEARRSFIQ 637
                    69********************************************************7 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   7.5e-23   3.4e-19       3     109 ..      36     174 ..      34     177 .. 0.85

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 7.5e-23
                 HHHHHHHHHHHHHHHHHH..HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT..............GTCSTTCHHCSTCHTSTSSSHHHHHHHHHH CS
   HATPase_c   3 ekrLrqiisnlvdNavkf..atkageieveikaseddlvisveDnGiGipkedlk..............klfekfsqddstkrggggtGlGlsivkklv 85 
                 e++L+++++++vdNav++  a+++++i+v +     d  ++v+DnG+G p++ ++              + ++kf+  ++++++gg +G+G+s+v++l+
  KIR64411.1  36 ERGLHHLVWEVVDNAVDEalAGYCDTIDVVLL--A-DGGVRVTDNGRGFPVDLHPklkkpgvevaltvlHAGGKFDG-KAYAVSGGLHGVGVSVVNALS 130
                 899***************7767**********..5.99*****************************877777****.*******************99 PP

                 HHTTTEEEE....................EEETTTEEEEEEEEE CS
   HATPase_c  86 elmgGeiwv....................esepgrGttftftlp 109
                 ++m  ei+                     e+++  G+ + f+++
  KIR64411.1 131 TKMAVEIHKsgfvwrqqytnskptplekgETTDRTGSAVAFWPD 174
                 99998888777777788886555555444333355777777766 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   9.5e-20   4.3e-16       1      99 [.     426     534 ..     426     538 .. 0.87

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 9.5e-20
                 EEEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHS.TTEEEEE..ECTTTHHHHHH.....HHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHTHHH CS
      Toprim   1 elvivEgpsdaktiakalgsgfqavtaslGhildlet.efkpvye..eiedkkkvlka.....lkelakradeiilatDpDreGeaiawellevlkell 91 
                 e++ivEg+s+ +++++ +++ +qa+++ +G+il++e+ ++++v++  e++  +++l++     ++++++r+++++l+ D+D++G++i+++ll++l ++ 
  KIR64411.1 426 EVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKaRIDRVLKnnEVQALITALGTgihddFDMEKLRYHKVVLMADADVDGQHIQTLLLTLLFRFM 524
                 689**********************************877888778888888889988**********************************9988444 PP

                 TT..TEEEEE CS
      Toprim  92 en..kigrve 99 
                 +   + g+v+
  KIR64411.1 525 RPlvELGHVY 534
                 4433336665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4664.11
//
Query:       KIR64412.1  [L=304]
Description: hypothetical protein TK50_01615 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-42  142.8   7.3    7.7e-42  142.4   7.3    1.1  1  DUF3566          Transmembrane domain of unknown function (DU


Domain annotation for each model (and alignments):
>> DUF3566  Transmembrane domain of unknown function (DUF3566)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.4   7.3   4.3e-46   7.7e-42       1     118 []     185     302 ..     185     302 .. 0.98

  Alignments for each domain:
  == domain 1  score: 142.4 bits;  conditional E-value: 4.3e-46
     DUF3566   1 arrarlqlsrvdpwSvlklsfllsvalfivlvvavavlylvldalgvfdkvnslvkdlvgeessldleevlslgrvlslaalvgvvnvvlltalatlaa 99 
                 +rrarl+l+r+dpwSv+k++f++sv+lfiv+vva+ vlyl+lda+gvf++vn+ ++dlv + ++++ +  ++++ v+  +al+g+vnvvl+talatl+a
  KIR64412.1 185 PRRARLNLKRIDPWSVMKFAFAVSVVLFIVVVVATSVLYLALDAMGVFQSVNDSLTDLVAAGGQSSSTFQITAKGVILSSALIGLVNVVLFTALATLGA 283
                 69************************************************************98999999***************************** PP

     DUF3566 100 llYNlvadlvGGlevtLad 118
                 ++YN++adlvGG+e+tLa+
  KIR64412.1 284 FVYNVCADLVGGIELTLAE 302
                 *****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 1928.00
//
Query:       KIR64413.1  [L=436]
Description: hypothetical protein TK50_01630 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-19   70.6   0.0    5.4e-19   68.8   0.0    1.8  1  Abhydrolase_1  alpha/beta hydrolase fold
    7.4e-19   67.8   1.0    1.2e-18   67.1   0.2    1.8  2  Abhydrolase_4  TAP-like protein


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   6.1e-23   5.4e-19       2     254 ..      31     408 ..      30     411 .. 0.81

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 6.1e-23
                    EEEEE-STTTCGGGGTTGHHHHHHHHT...TSEEEEEEETTSTTSSSTTTGB......CHH................................... CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd...gfdvillDlrGvgySspapacin.....ddy................................... 54 
                    vlv   G+pg+++v+  + la   + +   ++d++++D+r v +S+p  + ++       y                                   
     KIR64413.1  31 VLVTTGGGPGGAGVPEPLNLAAIVDPAvlaRYDIVGFDMRFVERSTPITCGQPeeepgG-Ywvrtatyqslkdtaaeareytrdcarhagwalpfa 125
                    677778999999996665555444444777***************99998777777750.255556668888888899999*************** PP

                    SHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCH CS
  Abhydrolase_1  55 gtasvaddldrildalgddkltlvGhSmGGmialayaaeyperVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaa 150
                    +ta  a+d+d+i+++lg +kl  +G+S+  m++ ay  ++p+rV+++vl++++++  +++  +++ ++ f +    +    a n+a+  l++  a 
     KIR64413.1 126 TTAQAARDMDAIRASLGERKLSFLGGSYAAMLGVAYGTLFPHRVDRFVLDSPVNYDLAWRPYELNRIPAFEENYAAFTGYLADNSAAFGLGSTPAE 221
                    ****************************************************99999999999999999988777777777777777766666666 PP

                    HHHHHHHHHHHHH...............................................................................HCHH CS
  Abhydrolase_1 151 leqrhrlvdalkf...............................................................................pdks 167
                        ++  +a                                                                                  + + 
     KIR64413.1 222 AAGTLSEAFAEAAiepivagdhawtvgelgsltviatyfeqlwpvvatnlaailartpppipldprpaplpgtpgvpadnhtavnmafrcgdNAWP 317
                    666666555555578899999999999999999999999999999999999999999999999999999988888888888888888888888888 PP

                    HCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHC...THHHHS.EEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHH CS
  Abhydrolase_1 168 krfpssgsdnasslatgalksieqwpttdsaklllrlre...lknvla.ptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafl 254
                    +++ + ++d    ++++ ++  + ++ +++a +  ++++   l    a  +lv+++  D  vpp ++   a+++ ++rlv++++  H  +l
     KIR64413.1 318 RDLATYRRDLTRLGTRYPVFGPSMANLNPCAFWPVSRDNtppLASNRApAALVVAALRDASVPPANSIATARAITGSRLVTVDKQTHVPLL 408
                    8888888888888888888888888888888888888887763333334778888899999999888888888888888888888887665 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.1     1e+04      48      64 ..     218     234 ..     217     247 .. 0.84
   2 !   67.1   0.2   1.4e-22   1.2e-18       1     103 []     334     436 .]     334     436 .] 0.93

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.1
  Abhydrolase_4  48 TPyegakklakalggav 64 
                    TP e a +l++a+ +a+
     KIR64413.1 218 TPAEAAGTLSEAFAEAA 234
                    99999999999999874 PP

  == domain 2  score: 67.1 bits;  conditional E-value: 1.4e-22
  Abhydrolase_4   1 spvfgaalaesllsCagwpvspqrprdestakgaapvLllqnerDpaTPyegakklakalggavlvtvegeGHgala..agntCvdkavdaYLltG 94 
                    +pvfg  +a+ +  Ca+wpvs+++ ++ +++  a+ +L++++ rD+ +P++   ++a+a++g++lvtv++++H  l   + n+C+ ++v+aYL  G
     KIR64413.1 334 YPVFGPSMANLN-PCAFWPVSRDNTPPLASN-RAPAALVVAALRDASVPPANSIATARAITGSRLVTVDKQTHVPLLsgQANACMTDMVTAYLVHG 427
                    588999999988.5******99999888877.56***************************************98776789*************** PP

  Abhydrolase_4  95 elpaddtvC 103
                    +lp+++t+C
     KIR64413.1 428 HLPKQNTAC 436
                    ********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2990.24
//
Query:       KIR64414.1  [L=255]
Description: haloacid dehalogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-13   51.0   0.0    2.4e-13   50.6   0.0    1.1  1  HAD_2           Haloacid dehalogenase-like hydrolase
    2.5e-12   46.7   0.6    4.8e-12   45.8   0.1    1.7  2  Hydrolase_like  HAD-hyrolase-like
    7.7e-11   42.7   0.0    9.7e-11   42.4   0.0    1.3  1  Hydrolase       haloacid dehalogenase-like hydrolase
    3.9e-07   30.7   0.3    5.2e-07   30.3   0.3    1.3  1  HAD             haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.13   12.4   0.0       0.24   11.5   0.0    1.4  1  HTH_3           Helix-turn-helix


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   6.7e-17   2.4e-13      77     175 ..     111     211 ..      98     214 .. 0.92

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 6.7e-17
       HAD_2  77 evkpydgvkelLeeLkeagyklgivTsks.reaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsp.tDieaakkagi 173
                 +  + +g+ ++L   ++ag+ l++v++ +  +a +++l++ g+ ++F+  + s++++ +KP+pe+ + a + l++  +++++vGDs  +D+ +a++ag 
  KIR64414.1 111 QWAVRPGIPDALAAATRAGLPLAVVSNTTcGAAPRDFLAAAGLGTLFTAQLYSDEAGVRKPNPELARLAARALGVPVADCWFVGDSRhRDVACARRAGA 209
                 567889**********************615667999**************************************************9**********8 PP

       HAD_2 174 kv 175
                  +
  KIR64414.1 210 GA 211
                 66 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.8   1.4e+04      36      48 ..     123     135 ..     122     138 .. 0.76
   2 !   45.8   0.1   1.3e-15   4.8e-12       3      71 ..     169     237 ..     167     240 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.8
                     HHHHHCT-EEEEE CS
  Hydrolase_like  36 agAnnaGwksvLV 48 
                     a+A +aG+  + V
      KIR64414.1 123 AAATRAGLPLAVV 135
                     7899999876665 PP

  == domain 2  score: 45.8 bits;  conditional E-value: 1.3e-15
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EE.EEESSSSS-TTTHHHHHHHHT---SE CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwks.vLVltGvtrpedleepehkptyvadd 71 
                     +KP+pe+ + a+++lg++ ++++++GD+ + D+a+A++aG+   vL ++  t++e+ ++p+ +p++v++d
      KIR64414.1 169 RKPNPELARLAARALGVPVADCWFVGDSRHRDVACARRAGAGAaVLMRSPRTDREE-PLPALAPDAVVED 237
                     8***************************************9876999999999988.99********998 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   2.7e-14   9.7e-11      71     210 .]      73     208 ..       6     208 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 2.7e-14
                 HTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHH.HTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHH.HHHHHTT.GGGESEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx.xxxxxxxxxx RF
   Hydrolase  71 igkpewltaldippdlgaaigsaqsqgrtvallqaralavftia.dplkvkpeaaeavasLkaagievvlltgdnpetae.raanqlG.ddyfdavias 166
                  g ++ +++          +g + + +r ++  +a  la+ +   +++ v+p++ +a+a+  +ag++++++++     a    +  +G    f a + s
  KIR64414.1  73 LGHRQVWARF--------VTGGWPAPARAAVDREATPLAYAWTWhQQWAVRPGIPDALAAATRAGLPLAVVSNTTCGAAPrDFLAAAGlGTLFTAQLYS 163
                 4444444444........455555555555555666666665554999***************************999995566669988999****** PP

                 HCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHH.HHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
   Hydrolase 167 dietvakpspegkvaaireLqgkpeevamVGDgvn.DaaalaaAg 210
                 d+ +v kp+pe  + a+r L+++ +++ +VGD+   D+a +++Ag
  KIR64414.1 164 DEAGVRKPNPELARLAARALGVPVADCWFVGDSRHrDVACARRAG 208
                 *****************************************9998 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.3   1.4e-10   5.2e-07      68     188 .]     104     205 ..      50     205 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.4e-10
         HAD  68 elaaelerfvaevirpklldpgalellaahraaGdrvvvvSgglrplv.epllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaae 165
                 +   +++++          +pg+ ++laa+ +aG +++vvS++    + + +la+ g    l+t       +t++l  ++  vr+     +l++ laa+
  KIR64414.1 104 YAWTWHQQWA--------VRPGIPDALAAATRAGLPLAVVSNTTCGAApRDFLAAAG----LGT------LFTAQLYSDEAGVRK--PNPELAR-LAAR 181
                 3455666666........78***********************6655538899****....***......*****6666666665..3345555.888* PP

         HAD 166 gegidleevvayGDsp.sDlpllr 188
                   g + ++++++GDs+  D++++r
  KIR64414.1 182 ALGVPVADCWFVGDSRhRDVACAR 205
                 ***************967999987 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.6e-05      0.24      30      53 ..     165     188 ..     159     190 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.6e-05
                 HTTSSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  30 EnGernPsletlkklakaLgvsld 53 
                 E G r+P++e + + a+aLgv+ +
  KIR64414.1 165 EAGVRKPNPELARLAARALGVPVA 188
                 89*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2157.08
//
Query:       KIR64415.1  [L=1492]
Description: haloacid dehalogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-41  139.7   2.0    1.5e-40  138.7   2.0    1.6  1  E1-E2_ATPase     E1-E2 ATPase
    6.4e-19   69.1  10.3    6.4e-19   69.1  10.3    3.6  3  Hydrolase        haloacid dehalogenase-like hydrolase
    1.2e-17   64.3   0.0    1.9e-17   63.6   0.0    1.3  1  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    6.9e-05   22.5   0.0     0.0002   21.0   0.0    1.9  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    0.00021   21.7   0.0    0.00068   20.0   0.0    1.9  1  HMA              Heavy-metal-associated domain
    0.00044   20.3   0.0    0.00089   19.3   0.0    1.4  1  Cation_ATPase    Cation transport ATPase (P-type)
     0.0049   16.6   0.2      0.013   15.2   0.0    1.6  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.021   15.2   0.9      0.087   13.2   0.7    2.2  2  HAD              haloacid dehalogenase-like hydrolase
       0.21   11.3   0.6       0.52   10.1   0.6    1.6  1  Rz1              Lipoprotein Rz1 precursor


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   2.0   7.3e-44   1.5e-40       3     181 .]     737     926 ..     735     926 .. 0.98

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 7.3e-44
                   S--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-...........G-TTEE-TT-EEEE-EEEEEEEE CS
  E1-E2_ATPase   3 lpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvek...........ekgdmvfsGtvvvsgeakavVta 87 
                   ++ ta v+r+gte++++a+elv GD+++l +gd vpaD+r++     e des+LTGEslpv k           ++++m++ Gt++  g+ +avV+a
    KIR64415.1 737 SAVTALVRRGGTERTVAAEELVSGDVIVLGPGDAVPADCRVLATDGlEADESSLTGESLPVGKsadpvvaaavaDRHSMLYEGTTIATGHGTAVVVA 833
                   56789999*****************************************************************99********************** PP

                   -TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHT CS
  E1-E2_ATPase  88 tgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrlakk 181
                   tg+dte g+  +l++++ +  + ++  l kl++  vp++   a++v+ + ll+g +lae+   a  l+va++P++Lp +v+ a +++arrla++
    KIR64415.1 834 TGSDTEAGRSLALARQS-PPASGVEARLGKLTRSAVPLAAGSAVAVAGAGLLRGVPLAETAATAANLAVASVPEGLPFLVSAAQLAAARRLAEH 926
                   ****************9.9************************************************************************986 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.045        89      93     143 ..     467     517 ..     363     527 .. 0.73
   2 ?   -2.0   0.3       1.8   3.6e+03      38     103 ..     800     873 ..     785     929 .. 0.48
   3 !   69.1  10.3   3.2e-22   6.4e-19       1     210 []     942    1242 ..     942    1242 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.045
                 HHHHCHHHHHHTTHHHHHHHHHHTHHBHTT...HHHHHHHHHHTTEEEEEEESS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  93 aqsqgrtvallqaralavftiadplkvkpe...aaeavasLkaagievvlltgd 143
                   ++g   ++  ++ ++ +++ad   v p+   ++++v++L++ g  v ll+ d
  KIR64415.1 467 IRQAGLRLVV-AGDDDGRYAFADA--VLPGgprTVDTVRQLQRDGAVVLLLSAD 517
                 3333333333.3677788888888..7776222445555577778855555555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.8
                 HHCHHHHHHHHHHHHHHHHHHHHHHETTTE.........HHHHTHHHHHHHH.HCHHHHHHHHHHHHHHCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  38 sehpigkalvaaakarsgaltgfatfigrg.........ayaigkpewltal.dippdlgaaigsaqsqgrtvall 103
                 s  p  +a va  + +  + t +at  g+g             g+   l+++ +  + ++a+ g++ + +   a  
  KIR64415.1 800 SADPVVAAAVADRHSMLYEGTTIAT--GHGtavvvatgsDTEAGRSLALARQsPPASGVEARLGKLTRSAVPLAAG 873
                 5556666666666666666666666..6666663333332222222222222444444444444444444444444 PP

  == domain 3  score: 69.1 bits;  conditional E-value: 3.2e-22
                  SSEEEEESBTTTBCHHHHHHHHHHHH..............CHHHHHHHHHH.......HHCHHHHHHHHHHHHH....HHHHHHHHHETTTE..... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxx.......xxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx..... RF
   Hydrolase    1 iktvvfDkdGTLttgepsvedvivsa..............alalaaaletg.......sehpigkalvaaakar....sgaltgfatfigrg..... 67  
                  +++++fDk+GTLt+g+  +  v +                 + laaal+          ++   +a+ + a a     + + +g+++    g     
  KIR64415.1  942 VDVLCFDKTGTLTEGKLLLAGVGDGSgtryaapedldgalRRTLAAALRATpagdpdeLPQQTDRAVRRGAAAAgvdeRTDADGWQA---AGglpfe 1035
                  589*************77777666665534455555554444444444444555555522222222222222222222222233333...1112232 PP

                  .................HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH............................................ CS
                  .................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................ RF
   Hydrolase   68 .................ayaigkpewltaldippdlgaaigsaqsqgrtvall............................................ 103 
                                                                                                                   
  KIR64415.1 1036 psrgyhatvgragggllL----------------------------------Svkgapetvvprcaarrtadghdrplddagraelhrmlaeragag 1098
                  222344444444555552..................................033444444444444444444444444445555555666777777 PP

                  ......................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.............GGGESEEEE CS
                  ......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxx RF
   Hydrolase  104 ......................qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.............ddyfdavia 165 
                                            +++++iad   v++ aa av+++++ag+ ++++tgd+p+tae++a  +                      +
  KIR64415.1 1099 hrvlavaerpvtaetvtdddvtGLVFVGLLAIADG--VRESAAPAVRRIRQAGVHTIMITGDHPATAEAIAATISpdhgeqrvatateL-------D 1186
                  777777788888888887666545999********..*******************************999997778888644444431.......3 PP

                  HHCES...........STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                  xxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  166 sdiet...........vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210 
                  + ++            va   p +kv++i+ Lq +++ vam GDg+nDa+a++ A+
  KIR64415.1 1187 RLDDDalaerltrtdvVARCTPAHKVRIIQALQRNGRTVAMTGDGANDAPAIRLAD 1242
                  33333455556667889999********************************9887 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   9.4e-21   1.9e-17       2     176 ..    1313    1466 ..    1312    1472 .. 0.93

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 9.4e-21
  Cation_ATPase_C    2 lplsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllfgisekenklssnyaqtm 93  
                       ++l+  q+L++nL+tDl pala+a+ pp ++  ++  r+  ++ +   ++r+i++ ++ ++l + + + l+ +     + +       a t+
       KIR64415.1 1313 SALNGRQLLLVNLLTDLAPALAIAVRPPADGHADHLLREGPDSSLGETLTREIALRAASTTLGATVGWTLARY--TGRQRR-------AGTV 1395
                       678999*****************************9999999**************************88887..666655.......**** PP

  Cation_ATPase_C   94 aFitlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyvpglnavfgtaplsleewlialllalvvllvd 176 
                       a+ +lv +q+ +++ +              +++ +l+++++s++ +vl+v++pg+ ++fg++pl++  w ia++ al  +l +
       KIR64415.1 1396 ALASLVGTQLGQTVLAGG------------TSPTVLVSTAASVGALVLVVQTPGVSQFFGCTPLGPVGWSIAAGSALGATLAN 1466
                       ************999998............6899****************************************999988765 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0     1e-07    0.0002       1      69 []     632     696 ..     632     696 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1e-07
  Cation_ATPase_N   1 ehalsleevlekLetdlenGLtqaeaaerl.kkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69 
                      +h ++ ++vl++L+ + ++GL++aea +rl ++ G    + + +  l++ +++++ npl+ +L ++a++s
       KIR64415.1 632 WHLMPTDAVLRQLG-TGPDGLDDAEAHRRLgRRTG----DTPGPSGLLRAFVDELANPLTPVLAAGAVLS 696
                      9************9.9**************66777....5899************************998 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.4e-07   0.00068      13      59 ..      79     125 ..      77     128 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.4e-07
         HMA  13 aakvekvLselpgVesvkvdlatktvtVeg.daestklrkiieaieka 59 
                 a+ ve++L++lpgV+ + v+ a+++v+V + ++e+ klr++i +i  +
  KIR64415.1  79 ARQVERTLERLPGVTWARVNAASGRVVVAVgEPEP-KLRDLITTIARC 125
                 678*************************8857777.88******9887 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   4.4e-07   0.00089      22      89 ..    1002    1067 ..     986    1068 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 4.4e-07
  Cation_ATPase   22 nktEsALlvlaeklgldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrCt 89  
                     ++t+ A  + a+++g d     + ++    +pF+ sr ++++v +    ++++l vKGApe ++ rC 
     KIR64415.1 1002 QQTDRAVRRGAAAAGVDERTDADGWQAAGGLPFEPSRGYHATVGRA--GGGLLLSVKGAPETVVPRCA 1067
                     568888888888888888888889999999***************5..6******************6 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.6   3.2e+03      17      50 ..    1135    1168 ..    1128    1172 .. 0.85
   2 !   15.2   0.0   6.7e-06     0.013     195     245 ..    1214    1265 ..    1211    1273 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.6
                   -HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHH CS
  Hydrolase_3   17 sektkeaikklkekgikvviATGRslravlpvle 50  
                    e+++ a+++++++g++ +  TG ++ +++ ++ 
   KIR64415.1 1135 RESAAPAVRRIRQAGVHTIMITGDHPATAEAIAA 1168
                   57778899***************99999887765 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 6.7e-06
                   HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETT.S-HHHHHHSSEEE-- CS
  Hydrolase_3  195 lakelnisleeviafGDgeNDieMLeaaglgvAmgn.aseevkkaAdyvtks 245 
                   +++ l+ +   v+  GDg ND + +  a++g+A+g+ +++ + +aAd v+++
   KIR64415.1 1214 IIQALQRNGRTVAMTGDGANDAPAIRLADVGIALGQrGTPAARAAADLVVTD 1265
                   6789999999************************96599*******998765 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.6   5.2e+03      71     109 ..     480     516 ..     474     517 .. 0.84
   2 ?   13.2   0.7   4.4e-05     0.087      90     188 .]    1138    1239 ..    1069    1239 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.6
         HAD  71 aelerfvaevirpklldpgalellaahraaGdrvvvvSg 109
                 ++ + ++a++++p    p  ++ +++ ++ G  v ++S+
  KIR64415.1 480 DDGRYAFADAVLPG-G-PRTVDTVRQLQRDGAVVLLLSA 516
                 55666778888888.6.9999****99999999999998 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.4e-05
         HAD   90 alellaahraaGdrvvvvSgglrplvepllaelgadev.....latelevdd......rltge.lglegkpvrgegkvaalrewlaaegegidleev 174 
                  a  ++++ r+aG+++++++g +   +e+++a   +d+       atel++ d      rlt+  +  +   +  ++kv+ +++ l+++g      ++
  KIR64415.1 1138 AAPAVRRIRQAGVHTIMITGDHPATAEAIAATISPDHGeqrvaTATELDRLDddalaeRLTRTdVVAR---CTPAHKVRIIQA-LQRNG------RT 1224
                  444444445**********************8883333333245557777668645554444422222...333566777777.44444......37 PP

         HAD  175 vay.GDspsDlpllr 188 
                  va  GD+ +D p+ r
  KIR64415.1 1225 VAMtGDGANDAPAIR 1239
                  7777*******9865 PP

>> Rz1  Lipoprotein Rz1 precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.6   0.00026      0.52      12      31 ..     625     644 ..     620     646 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00026
         Rz1  12 kPPaPPAWamqpppdwqqlL 31 
                  PPaP AW ++p+   ++ L
  KIR64415.1 625 APPAPTAWHLMPTDAVLRQL 644
                 6************9887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.83u 0.27s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 10196.99
//
Query:       KIR64416.1  [L=97]
Description: hypothetical protein TK50_01650 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 637.79
//
Query:       KIR64417.1  [L=533]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-18   65.2  77.5    2.3e-14   53.1  51.0    3.8  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        4.9    7.4  16.2       0.39   10.9   5.6    3.2  3  DUF2306   Predicted membrane protein (DUF2306)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1  51.0   2.5e-18   2.3e-14       7     264 ..      78     368 ..      70     373 .. 0.67
   2 !    8.9  25.2   7.2e-05      0.65      11     179 ..     327     530 ..     317     533 .] 0.64

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 2.5e-18
       MFS_1   7 lsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpa 105
                 l a+ + ++g+a+p ++a++l    s +gl++++ ++  +v++++ G++ d  G+r  ++ g+ +f++gll++  as++ +l+++r++qG+g+g+l  a
  KIR64417.1  78 LLAFEALAVGTAMP-TVARSLD-GLSLYGLAFGGAFASGVVGMVVSGVWCDARGPRAPVWHGAGWFVAGLLVAGSASTMGVLVAGRMVQGFGSGLLSVA 174
                 34444445788888.9******.**********************************************55555337777******************* PP

       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll.peepperkrkspkeee............... 188
                  ++++ + +p+  + r ++ ++a++ + +++gp+++gl++++lgWr+vf+++ +v++ a++l+   l    p++  r+s+                   
  KIR64417.1 175 LYVVVGRAYPEALHRRIFAAFAAAWVIPSLVGPAIAGLVVEYLGWRWVFLAVPAVAVPALLLVQPGLrSLAPSAVVRPSTGAAArvgwafgagasaall 273
                 ***********************************************************7744333323333333333333332666665566556666 PP

       MFS_1 189 ...........kgtgpaplvp.........awkallkdpvlw..illialllfffgfsglltllplylqevlglsglllaglllallalvgailalla 264
                            +g ++a+l+          + + l++ + l   + l +l++  ++f+g+ + +pl+l   +gl+    agl+l ++al + +++ l 
  KIR64417.1 274 hyggqqrgvlaVGLVGAALAGlfccaprllPAGFLRAGRGLPtvVGLRGLAS--AAFAGAEVVIPLMLSRERGLT-PTGAGLVLTVGALSWSAGSWLQ 368
                 5554444443311111111112222233332222222221111112222222..355556666666666666666.4555555555555555555544 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 7.2e-05
       MFS_1  11 arsilgpalplalaedlgispseigllltl.......yalga..................avaslplGrlsdrfGrrr.vlllglllfalg.lllll.f 81 
                 a++ + +++pl+l+++ g++p+ +gl+lt+           +                  a+   +l+ l dr+ +r+   l+ + l +++ +++ + +
  KIR64417.1 327 AFAGAEVVIPLMLSRERGLTPTGAGLVLTVgalswsaG---SwlqgrlpapgsavpapasAARRGLLAGLRDRLAPRSsATLVRAGLACITgGTATVaL 422
                 55555566666666666666666666555533222221...1222233322222222222333334444445666665555555555555544444432 PP

       MFS_1  82 a....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfll 170
                 a     +l++ +++++ +Glg+g+l+p+  +l+ +++++ e+gr  + l++g sl a+   +l g++++++       + ++ +++a+++ l+++l++ 
  KIR64417.1 423 AvwpaVPLPVCVLGWAAAGLGMGLLYPSLSVLTLELSAPGEQGRNSSSLQLGDSLFAATVLALTGAVLAAGTtpgrssYAVTLVLAAGLAGLGVLLAGR 521
                 234346777899999******************************************999999999996655897777777777777777777778888 PP

       MFS_1 171 llpeepper 179
                 ++p+ p + 
  KIR64417.1 522 VIPAGPAPG 530
                 877777765 PP

>> DUF2306  Predicted membrane protein (DUF2306)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       1.6   1.4e+04      13      21 ..      69      77 ..      63      93 .. 0.55
   2 ?   10.9   5.6   4.4e-05      0.39      28      91 ..     133     193 ..     112     233 .. 0.85
   3 ?    2.8   0.4     0.014   1.2e+02      39      71 ..     478     509 ..     452     522 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.6
     DUF2306 13 llGalqlvk 21
                ++G+++lv+
  KIR64417.1 69 TVGVVALVS 77
                333333332 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 4.4e-05
     DUF2306  28 pklHrlaGrvyvlavllaalsglflsvyatgglvlllgflllallwlvftvlalvairrrdfaa 91 
                 p +H   G   ++a+ll+a s+  + v+ +g +v+ +g +ll+++  v++ +a+ ++++r++ a
  KIR64417.1 133 PVWH---GAGWFVAGLLVAGSASTMGVLVAGRMVQGFGSGLLSVALYVVVGRAYPEALHRRIFA 193
                 4455...8999*************************************************9533 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.014
     DUF2306  39 vlavllaalsglflsvyatgglvlllgflllal 71 
                 + a+ + al+g++l+  +t+g + +++ l+la 
  KIR64417.1 478 F-AATVLALTGAVLAAGTTPGRSSYAVTLVLAA 509
                 4.556779*************777776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 3557.38
//
Query:       KIR64418.1  [L=64]
Description: hypothetical protein TK50_01665 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 495.99
//
Query:       KIR64419.1  [L=186]
Description: prolyl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-17   62.8   0.1    4.4e-17   62.3   0.1    1.2  1  tRNA_edit  Aminoacyl-tRNA editing domain


Domain annotation for each model (and alignments):
>> tRNA_edit  Aminoacyl-tRNA editing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.1   2.5e-21   4.4e-17       5     115 ..      48     161 ..      44     168 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 2.5e-21
   tRNA_edit   5 ktieelaaalgvdpsaiaKtlvlkdkkge...lvlvllpgdreldlkklakllga.kklrlaseeelrellgvepGgvgPlglkaagvpvllDeslkey 99 
                 ++++e ++a gv  +  a+++v+  k+g    ++++++ +++++d + +a++    +k+++a  +e  el+g+e Gg++P+gl + ++p+l+D++++  
  KIR64419.1  48 ADTAEFCSAYGVGLDVSANCVVIAGKRGSeirYAACVVLATTRADVNGVARRALDvRKASFAPMAEAVELTGMEYGGITPIGL-PGDWPILVDARVVAA 145
                 6778899999999999999****996666777***************999876644***************************.9************** PP

   tRNA_edit 100 ptvvvgagengatlel 115
                 p v+vg+g +++ + l
  KIR64419.1 146 PYVIVGSGVRHSKIAL 161
                 *********9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1406.36
//
Query:       KIR64420.1  [L=208]
Description: DSBA oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-43  148.3   0.0    2.4e-43  148.2   0.0    1.0  1  DSBA           DSBA-like thioredoxin domain
    8.1e-10   39.1   0.0    5.7e-08   33.1   0.0    2.1  1  Thioredoxin_4  Thioredoxin
    2.1e-07   30.8   0.0    3.4e-05   23.6   0.0    2.1  2  Thioredoxin_5  Thioredoxin
    0.00088   19.3   0.0      0.032   14.3   0.0    2.3  2  Thioredoxin_3  Thioredoxin domain
     0.0035   17.8   0.0       0.11   13.0   0.0    2.1  2  Thioredoxin_2  Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.2   0.0   6.7e-47   2.4e-43       2     192 ..       3     200 ..       2     201 .. 0.97

  Alignments for each domain:
  == domain 1  score: 148.2 bits;  conditional E-value: 6.7e-47
                 EEEEEBTTBHHHHHHHHHHHHHHHHCCT.EEEEEEE-SSSCHHHHCT.S.GGG.......SHHHHHHHHHHHHHHHHHHT....GGSSHHHHHHHHHHH CS
        DSBA   2 vdeffDvlCPyCylgkerleklaarspd.vkvvlrpfelagakkasgnvgpse.......lpeklkylledlkrlaeaegiplrfpkdklknstraarl 92 
                 ++++ Dv+CP+C++gk+rle++++ + + v+v++rpf+l+++ + s+++++ e         e+ + ++++ +r+a+  g+++rf++   +n++ a+rl
  KIR64420.1   3 IEIYADVVCPWCWIGKRRLEQALESYGGeVTVRYRPFQLDPS-PVSEPKPLVEalaakfgGRERAEGMFAQVTRVAAGVGLDMRFDRAVHANTFEAHRL 100
                 99************************556*************.8899999999*****9999**************************989******** PP

                 HHHHHHHHGHHHHHHHHHHHHHTSSS-TSSHHHHHHHHHHTTS.HHHHHHHHTSHHHHHHHHHHHHHHHHTT-SSSSEEEETTCEEEESSSSHHHHHHH CS
        DSBA  93 llaagaeglaekvvrelfealwsegqaitddqellevaekaGldaeeldealeseavkeavrentaaaqslgvtGvPtvvvdgkrmvfGadrldtlada 191
                 +  a+++g+ +++v++l++a + +g +i+ ++ l+++a+ +Gld  e++  les+    +v+ + aaa++lgv+ vPt+v+ gk++v+Ga+ ++tl  a
  KIR64420.1 101 IRFAAERGRSAELVEALYRAHFADGVDIGARDALVKLATGVGLDEVEARDYLESNLGRREVAADLAAARELGVSSVPTFVLAGKYAVTGAQEPETLLAA 199
                 ************************************************************************************************998 PP

                 H CS
        DSBA 192 l 192
                 l
  KIR64420.1 200 L 200
                 7 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.6e-11   5.7e-08      17     164 ..       3     200 ..       1     202 [. 0.74

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.6e-11
                    EEEEE-TT-HHHHHHHHHHHHHHHHHHHTTSEEEEEEE-..---STTTHHHHHHHTT--TT..HHHHHHHHHHHHTH.....HHHTTS-..HHHHH CS
  Thioredoxin_4  17 vieyedlrCphCakfeeeveklleeyidtGkvkfiirdfpldkekeslkaamaarcagees..peaflaikallysq.....qeewaes..lkela 103
                    +++y+d+ Cp C   ++ +e+ le y   G+v +++r+f ld+   s    ++   a++ +  + a  ++ ++++ +     ++++ ++  +    
     KIR64420.1   3 IEIYADVVCPWCWIGKRRLEQALESY--GGEVTVRYRPFQLDPSPVSEPKPLVEALAAKFGgrERAEGMFAQVTRVAagvglDMRFDRAvhA---- 92 
                    899***********************..9**********88777655444444444444432223444444433333333443333333331.... PP

                    ....................................................HHHHHTS-------HHHHHHHHHHHHHHT--SS-EEEETTEE.E CS
  Thioredoxin_4 104 ae...............................................aldkdekfeacleeekldalveaeskeakkagiestPtfiingek.v 151
                     +                                                + ++ +  + le+   +++v+a+++ a+++g++s+Ptf++ g+  v
     KIR64420.1  93 -NtfeahrlirfaaergrsaelvealyrahfadgvdigardalvklatgVGLDEVEARDYLESNLGRREVAADLAAARELGVSSVPTFVLAGKYaV 187
                    .23333455555666888888999999999999********9999998766667778889999999************************888779 PP

                    -TT--HHHHHHHH CS
  Thioredoxin_4 152 eepqtyeelkali 164
                    +++q++e+l a++
     KIR64420.1 188 TGAQEPETLLAAL 200
                    ********99987 PP

>> Thioredoxin_5  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0     0.004        14       3      36 ..       6      39 ..       5      68 .. 0.93
   2 !   23.6   0.0   9.4e-09   3.4e-05      92     164 ..     110     182 ..     104     192 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.004
  Thioredoxin_5  3 FidPlcseCweiEpelkklkveygekiklrfill 36
                   + d +c+ Cw  ++ l +  ++yg  +++r++++
     KIR64420.1  6 YADVVCPWCWIGKRRLEQALESYGGEVTVRYRPF 39
                   67889*************************9986 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 9.4e-09
  Thioredoxin_5  92 grkFLrklqealflekkniskeellleiaekaglDveefkeDlesklakkafqcDlklakemgvtevPtlvff 164
                    + +++  l  a f +  +i   + l ++a+ +glD  e +  les+l  +   +Dl  a+e+gv++vPt+v+ 
     KIR64420.1 110 SAELVEALYRAHFADGVDIGARDALVKLATGVGLDEVEARDYLESNLGRREVAADLAAARELGVSSVPTFVLA 182
                    5566777888999999******************************************************975 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.041   1.5e+02       1      33 [.       1      34 [.       1      39 [. 0.86
   2 !   14.3   0.0   9.1e-06     0.032      37      72 ..     163     197 ..     154     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.041
                   EEEEE.ESSSSTTCHHHHHHHHHHCHCCTCECEE CS
  Thioredoxin_3  1 meikv.lgpgCakCpklekavkeaaaekgikaev 33
                   mei++  +  C+ C   ++ +++a+++ g +++v
     KIR64420.1  1 MEIEIyADVVCPWCWIGKRRLEQALESYGGEVTV 34
                   8999977888*****9999999999999988877 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 9.1e-06
                    TTHHHHHHCT-SSSSEEECTTCEEEESS---CCHHH CS
  Thioredoxin_3  37 tdfeeiekygVmsvPalvidgkvvvsGkvpseeeir 72 
                     d+    + gV svP+ v+ gk  v+G + ++e + 
     KIR64420.1 163 ADLAAARELGVSSVPTFVLAGKYAVTG-AQEPETLL 197
                    67777899*******************.67766655 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.032   1.2e+02      15      47 ..      12      46 ..       4      76 .. 0.78
   2 !   13.0   0.0     3e-05      0.11      66     109 .]     161     200 ..      86     200 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.032
  Thioredoxin_2 15 pdC.pyCkklkkelkel.ddvtvrvllfplkpsfe 47
                   p+C    ++l++ l+++  +vtvr++ f+l+ps +
     KIR64420.1 12 PWCwIGKRRLEQALESYgGEVTVRYRPFQLDPSPV 46
                   44544458999999999999999999999887733 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 3e-05
  Thioredoxin_2  66 ieenvelarkygvrgtPtivfldgkeivarlpGyvpaeeleall 109
                    +++  + ar++gv+++Pt+v+  +      ++G+  +e l+a+l
     KIR64420.1 161 VAADLAAARELGVSSVPTFVLAGKY----AVTGAQEPETLLAAL 200
                    66777899*************9999....99*******999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1766.57
//
Query:       KIR64421.1  [L=142]
Description: cysteine desufuration protein SufE [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-22   77.7   0.0    7.2e-22   77.5   0.0    1.0  1  SufE      Fe-S metabolism associated domain


Domain annotation for each model (and alignments):
>> SufE  Fe-S metabolism associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0     4e-26   7.2e-22       3     122 .]      14     136 ..      12     136 .. 0.92

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 4e-26
                 HHHHSSSHHHHHHHHHHHHHTS----C..CCCCCCEEECTSSSEEEEEEEEETTS...EEEEEEESSHHHHHHHHHHHHHCTTEECCCCTCC-TCHHHH CS
        SufE   3 efsllddweeryrylielgkklpplpe..elkteenkvkGCqsqvwlaaeledgk...lkfeadsdarivkGllalllevlsgktpeeilavdledfle 96 
                 ef+++  ++  +++l+e+++ +pplp   + ++ +++v++Cq+  +l+ae++ ++     f+++ +a+++++++ +l e+lsg++ +e+lav+  d+++
  KIR64421.1  14 EFAAA-PRDVVLEMLLEYADVIPPLPGelAGREGMEQVPECQTAFFLRAEVNPDRtvtTWFDCPPEAPTTRAFAGILAEGLSGASTDEVLAVPD-DLYQ 110
                 55555.6677899*************955668889*****************88788999**********************************.**** PP

                 HTTSHHHHCHHHHHHHHHHHHHHHHH CS
        SufE  97 elglsehlspsRsnGlaamlkrikak 122
                 ++gl++++sp R +G +a+l+r+k++
  KIR64421.1 111 RMGLAQAISPLRVRGGTAILARLKRQ 136
                 ***********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1155.43
//
Query:       KIR64422.1  [L=141]
Description: signal transduction protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-24   86.1   5.4    7.9e-12   45.4   0.1    2.1  2  CBS       CBS domain


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   1.5   3.4e-15   6.1e-11       1      52 [.       6      56 ..       6      60 .. 0.90
   2 !   45.4   0.1   4.4e-16   7.9e-12       1      53 [.      71     123 ..      71     127 .. 0.93

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 3.4e-15
                HHHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTT.BEEEEEEHHHHH CS
         CBS  1 VgdimtrdvvtvppdttleealelmrekgvsrlPVVdedg.klvGivtlrDll 52
                V+d+mtr+vv++p +ttl ea++ m+e++++ + VV  dg  l G++t+rD++
  KIR64422.1  6 VSDVMTRQVVYLPAETTLDEAARVMKEADIGDV-VVT-DGaSLAGMLTDRDIV 56
                89***********************8888****.884.4437**********7 PP

  == domain 2  score: 45.4 bits;  conditional E-value: 4.4e-16
                 HHHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHH CS
         CBS   1 VgdimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllr 53 
                 +g++ tr+vv++   +t +ea+ lmre+g++r++V d++ klvGiv+l Dl+ 
  KIR64422.1  71 IGSVITREVVMIEQHATAGEAASLMRERGIRRILVCDGERKLVGIVSLGDLAM 123
                 57899********************9999****999**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 942.56
//
Query:       KIR64423.1  [L=589]
Description: prolyl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-36  126.4   0.0    1.5e-36  126.0   0.0    1.1  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    3.6e-16   59.4   0.1    6.7e-16   58.5   0.1    1.5  1  tRNA_edit       Aminoacyl-tRNA editing domain
    8.7e-14   51.4   0.0    1.8e-13   50.5   0.0    1.5  1  HGTP_anticodon  Anticodon binding domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0   2.5e-40   1.5e-36       1     179 []      96     473 ..      96     473 .. 0.97

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 2.5e-40
                   EEEEETTSEEEEE-SSSHHHHHHHHHHHEEEBGG.SSEEEEEEEEEEBTTTSTBC.TTTB-SEEEEEEEEEEES.GGGHHHHHHHHHHHHHHHHHHT CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   1 YkledrndreyiLkPtneetfvelirdevlrskr.LPlklyqiqtkyRdEksdsr.GLlRvreFhqkdgyvfha.easlddslrdlikaisriferl 94 
                   ++l dr + e  L Pt+ee  + l++d    s+r  P+ l+q+qtk+RdE++  r GLlR+reF +kd+y+f + +a l+  +    +a++rif rl
    KIR64423.1  96 FTLADRRGAEHLLAPTHEELAALLVKDL-FTSYRdFPVTLFQVQTKFRDEAR-PRaGLLRGREFLMKDAYSFDLdDAGLQAAYDRHREAYQRIFTRL 190
                   7899*********************999.888666*****************.666******************8899999999999********** PP

                   T.SCEEEEEEGTTSCBTTSEEEEEEEEETT................................................................... CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................................... RF
  tRNA-synt_2b  95 glefraiielmsaksadykdkkefeavses................................................................... 124
                   gl f +++   +a  + ++ ++ef a +                                                                     
    KIR64423.1 191 GLDFTVVRATSGA--MGGSASEEFLAATDVgedtfvgctacdyaanteavvtrppaagdpdaqpasavhdtpetptiaalvdlantrrlagradwta 285
                   ***9999888664..67999****999999999**************************************************************** PP

                   ................................................................................................. CS
                   ................................................................................................. RF
  tRNA-synt_2b 125 ................................................................................................. 124
                                                                                                                    
    KIR64423.1 286 adtlknvvltvrrpgvaeaeplvvglpgdrevdlkrlgaalapatvavfddwaahpelvrgyigpqrlaglgvrylvdprvvpgtawltgadepgrh 382
                   ************************************************************************************************* PP

                   ....................................TSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEEEEEEHHHHHHHHHHHH CS
                   ....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 125 ....................................ltkgieigtiqklgtrlserlgatvldennreksvimicaaigveRllsaileqn 179
                                                       +++gie+g+i++lg r+ +++ ++vl  +++  ++ m+c++igv+R ++ai eq+
    KIR64423.1 383 atdvvcgrdftpdgtieaaevrpgdpcpacasgaltMRRGIEVGHIFQLGRRYTDAFAVDVLGPAGKPVRPTMGCYGIGVSRAVAAIAEQH 473
                   ****************************************************************************************996 PP

>> tRNA_edit  Aminoacyl-tRNA editing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.1   1.1e-19   6.7e-16       1     117 [.     259     387 ..     259     392 .. 0.94

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 1.1e-19
   tRNA_edit   1 tpgtktieelaaalg.........vdpsaiaKtlvlkd.....kkgelvlvllpgdreldlkklakllgakklrlaseeelrellgvepGgvgPlglka 85 
                 tp+t+ti++l++ ++         + +++++K++vl +     ++ e+++v lpgdre+dlk+l ++l    +++a  ++ +++  +++G++gP  l  
  KIR64423.1 259 TPETPTIAALVDLANtrrlagradWTAADTLKNVVLTVrrpgvAEAEPLVVGLPGDREVDLKRLGAALA--PATVAVFDDWAAHPELVRGYIGPQRLAG 355
                 699999999999999999***********************999999*********************9..99999999*****************987 PP

   tRNA_edit  86 agvpvllDeslkeyptvvvgagengatlelsp 117
                  gv++l+D++++  + +++ga+e+g++ + ++
  KIR64423.1 356 LGVRYLVDPRVVPGTAWLTGADEPGRHATDVV 387
                 89************************987665 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0     3e-17   1.8e-13      14      93 ..     500     579 ..     483     580 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 3e-17
                     HHHHHHHHHHHHHTTTSEEEEES.SSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHHHH CS
  HGTP_anticodon  14 leeyakklaeeLraagirveldd.snesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelveklke 93 
                      ++ a +l  +L aag+rv +dd  + s g k+ +a+l+g+p avvvG + + +g v++rdr+t+e+ +++l+ lv+ l++
      KIR64423.1 500 QLDAALELGGRLAAAGLRVLVDDrTHVSAGVKFTDAELIGVPRAVVVGRRLA-DGYVELRDRATGERTELPLAGLVDRLRD 579
                     5799*******************9************************9987.***********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3839.98
//
Query:       KIR64424.1  [L=255]
Description: GDSL family lipase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-25   90.1   0.9    3.3e-25   89.5   0.9    1.3  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
    3.6e-13   49.9   0.0    4.3e-13   49.7   0.0    1.1  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.9   3.7e-29   3.3e-25       1     179 []       8     182 ..       8     182 .. 0.84

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 3.7e-29
                    EEESHHHHTCTTBCCHCHHCCCCCCCHHHTT......-EEEEE.EEHCCH.-H..HHHHHHHHCTGGG-TSEEEEE--CCCCCTT--HHHHHHH.. CS
  Lipase_GDSL_2   1 alGDSiTaGygadgggrsypaylarllaarl......gldvvnnlgvsGa.ttallrllerlrdllrlkpdlvtiliGtNDlgrgvpaaaaaandn 89 
                    a+GDS+T+G+ + + +++y+++ a+l+a rl      + ++ n l++ G+       ++e+++++l  kpdl+ + +G+ND++r++ +++a  ++ 
     KIR64424.1   8 AVGDSFTEGMDDAYPDGTYRGW-ADLVATRLaaeagpDFQYAN-LAIRGRlF--PNVVAEQVPAALSMKPDLISFAAGGNDVLRRTFDPDALVAR- 98 
                    79********999555555555.55555555555575555555.******63..4779***********************88887777777764. PP

                    HHHHHHHHCCC...GEEECEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHHCT-EEE-HHHHHHHCCCCCGGBBTTS.SSB-HHHHHH CS
  Lipase_GDSL_2  90 leelidalraaapgarilvlgplpptpeaaadarelnaviaaynealrevaaeegvpfvDlhdaladsgerladlladdglHPnaaGyrl 179
                    ++ ++++lr+   ga +l l +++ ++   + +r  + +++ +n+a+ e a+++g+ +vDl    ad++   + l+++d+lH++aaG+r+
     KIR64424.1  99 FDDVVRQLRSG--GADVL-LFRFADVMARLPGQRLVAPRVHLLNRAVGETAERHGAILVDL---YADDTFLNPMLWSTDRLHLSAAGHRR 182
                    *********99..99999.9999999999999999**************************...6777778888899999********96 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   4.8e-17   4.3e-13       2     197 ..       7     184 ..       6     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 4.8e-17
                  EEEESHHHHTTTHHHHHHHCCCCEECCCTTC.GCEEEEEEECTTHHHHHHHCCH.......ECTTTECHHHHHCTTSEEEEE--CTCC-EECSSCTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL   2 vafGDSltdGdgaatlntiqlktpknlnefdlaldrianignkgasdnelqqll.......nkyplkseqlkalhpdlviislGtNDsnlgkkstdaa 92 
                  va+GDS+t+G+ +a  + + +++ + +            +++ +  d++ ++l        n + ++   + + +pdl+ +  G+ND+        + 
   KIR64424.1   7 VAVGDSFTEGMDDAYPDGTYRGWADLVAT---------RLAAEAGPDFQYANLAirgrlfpNVVAEQVPAALSMKPDLISFAAGGNDV-------LRR 88 
                  89*********777777777777554432.........233333333333333344444554466679999*****************.......*** PP

                  CEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCHCTCCCCHCCHHHHHHHHHHHHHHHHHHHHHCTEEEECHHHHHHHTHCCGCHCHTSSSB-H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  93 kkeaeeyiknlreaikelkeegapkaivvlvsppglgpqeekdakklgekgnefvgeynqrlndlaekdgfavvDlydelqglsgieqlkaDglHpse 190
                    +++++++++++ +++l++ ga++++     ++   p          ++++ +v   n  ++++ae  g  +vDly   + l+   ++  D lH s 
   KIR64424.1  89 TFDPDALVARFDDVVRQLRSGGADVLLFRFADVMARLP--------GQRLVAPRVHLLNRAVGETAERHGAILVDLYADDTFLNPMLWST-DRLHLSA 177
                  *******************9998888888888888777........78999********************************9999998.******* PP

                  HHHHHHH CS
                  xxxxxxx RF
  Lipase_GDSL 191 kgyekla 197
                  +g++ +a
   KIR64424.1 178 AGHRRVA 184
                  ****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1825.69
//
Query:       KIR64425.1  [L=148]
Description: hypothetical protein TK50_01700 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1136.15
//
Query:       KIR64426.1  [L=300]
Description: thiosulfate sulfurtransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-33  114.4   0.1    1.4e-16   60.9   0.0    2.1  2  Rhodanese  Rhodanese-like domain
  ------ inclusion threshold ------
        0.6    9.3   1.2         11    5.1   0.3    2.1  2  Mating_C   C-terminal domain of homeodomain 1


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   1.2e-17   1.1e-13       1     106 [.      22     131 ..      22     132 .. 0.75
   2 !   60.9   0.0   1.6e-20   1.4e-16       5     105 ..     165     282 ..     162     284 .. 0.88

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 1.2e-17
   Rhodanese   1 sakelkellekgkvallDvRppee...YekghIpgAvnv.skdtlsrakkseapllelpeellel.gidnkktvvvycdgggr.aaaaaallkklGykn 93 
                 ++++l+e+l++++  l+ v ++e+   Y++ghIpgAv v  ++ l+++  ++  +++ ++el +  gi +++tvv+y+d+ +  aa a + +   G+ +
  KIR64426.1  22 TTDWLAEHLGDEG--LVVVESDEDvllYDTGHIPGAVKVdWHTELNDQVTRDYLDAASFAELCAAkGIGRDDTVVFYGDNFNWwAAYALWVFSLFGHAD 118
                 579******9998..666666666669************533333333333444444444444448**************99967777889999**888 PP

   Rhodanese  94 vsvldGGfkawke 106
                 v++ldGG ++w++
  KIR64426.1 119 VRLLDGGRQKWAA 131
                 ***********97 PP

  == domain 2  score: 60.9 bits;  conditional E-value: 1.6e-20
   Rhodanese   5 lkellekgkvallDvRppeeY................ekghIpgAvnvskdtlsrakkseapllelpeellel.gidnkktvvvycdgggraaaaaall 86 
                 + ++ ++g++ l+DvR+p eY                  ghIpgAv+ +++++ + + + ++ +el + ++++ g+++ + vv yc+ g+r++ ++  l
  KIR64426.1 165 VMAHVAAGRP-LVDVRSPGEYtgemlhmpdypqegalRGGHIPGAVSKPWKSAANDDGTFKSADELRAIYADQlGLSPSDDVVAYCRIGERSSHTWFVL 262
                 5566666665.**********9999999999999997779********99999999999999999999999999*****************99999877 PP

   Rhodanese  87 kk.lGyknvsvldGGfkawk 105
                    lGy++v+++dG++++w 
  KIR64426.1 263 HHlLGYPQVRNYDGSWTEWG 282
                 755****************6 PP

>> Mating_C  C-terminal domain of homeodomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0    0.0052        46     187     223 ..       2      33 ..       1      61 [. 0.79
   2 ?    5.1   0.3    0.0012        11      52      74 ..     134     156 ..     126     171 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0052
    Mating_C 187 PaakrnqvRpqtvsDPfPlatsepeldeWlaehldsp 223
                 P  +++++R+q  +DP  l+t++     Wlaehl  +
  KIR64426.1   2 PVPSDPNPRLQSYADPQRLVTTD-----WLAEHLGDE 33 
                 777899***************99.....999998433 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0012
    Mating_C  52 rkrqeerakrkaaaYPsPErsPa 74 
                 r + +e+ +r +aaYP PEr  a
  KIR64426.1 134 RELTREKVTRPRAAYPVPERNDA 156
                 556677889***********866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2352.55
//
Query:       KIR64427.1  [L=128]
Description: hypothetical protein TK50_01715 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.89    9.8  12.8        5.7    7.2   0.6    3.3  3  DUF2905          Protein of unknown function (DUF2905)
        9.7    6.3  20.6        1.8    8.6   8.3    2.3  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> DUF2905  Protein of unknown function (DUF2905)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.7    0.0008       7.1       2      42 ..       9      46 ..       8      48 .. 0.84
   2 ?    7.2   0.6   0.00064       5.7       5      24 ..      59      78 ..      57      99 .. 0.88
   3 ?    3.2   0.5     0.011     1e+02       2      18 ..     104     120 ..     103     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0008
     DUF2905  2 klLivlglvlvvlgllllllaklglGrLPGDirierenftf 42
                + L+++g++l  +g++ +l+   g+G L GD +i+ e+  +
  KIR64427.1  9 RPLVLAGILLGGAGVFDVLV---GIGDLVGDPYISIEGGAL 46
                67999999999999999999...9*******8888777655 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00064
     DUF2905  5 ivlglvlvvlgllllllakl 24
                +++g++lvv+g+l++l +++
  KIR64427.1 59 LTAGVLLVVAGALVPLGRRW 78
                689*************9776 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.011
     DUF2905   2 klLivlglvlvvlglll 18 
                 +++ivlgl+l+++ l+l
  KIR64427.1 104 RVVIVLGLALAAARLVL 120
                 899*******9998876 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   8.3    0.0002       1.8      41      93 ..      13      81 ..       7      86 .. 0.63
   2 ?    1.4   7.6     0.036   3.2e+02      47      92 ..      83     124 ..      78     128 .] 0.46

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0002
  Phage_holin_3_6 41 gaagvlallalllllvala............lalaa.....lwlaalivaavllvlagvlalvglkklkk 93
                     +a+ +l+  +++ +lv++              al        w++  ++a+vllv+ag+l+ +g++  ++
       KIR64427.1 13 LAGILLGGAGVFDVLVGIGdlvgdpyisiegGAL-YhydvtGWAWVNLTAGVLLVVAGALVPLGRRWSAR 81
                     3333344444444444442334555566665333.13356899*********************996655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.036
  Phage_holin_3_6  47 allalllllvalalalaalwlaaliv......aavllvlagvlalvglkklk 92 
                      al+a++++ ++ +l+          +       +++l la+++a++ l++ +
       KIR64427.1  83 ALFAVAAAAATHLLI----------LtyhplrVVIVLGLALAAARLVLRQRR 124
                      333333333333333..........222333346666666666666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 915.81
//
Query:       KIR64428.1  [L=595]
Description: heat shock protein 90 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-09   36.9   0.0    4.3e-09   36.3   0.0    1.2  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
    7.8e-06   26.4   0.0    1.3e-05   25.7   0.0    1.3  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    0.00023   20.2   0.0    0.00032   19.7   0.0    1.1  1  HSP90        Hsp90 protein


Domain annotation for each model (and alignments):
>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   7.3e-13   4.3e-09       6     100 ..      27     133 ..      21     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 7.3e-13
  HATPase_c_3   6 AlaelvdNsldAdaen..........vkievnknrgktgeivieDdGkGmseeelknal.rlatsskeak...rkstslGkkGiGlklAslslgkklt 89 
                   + el +N++dA   +          v i  ++    +g++++ D G G++e+++ + l ++++ssk+ +   + ++ lG++GiG  l+ + +++++ 
   KIR64428.1  27 YVRELMQNAVDAITARragepdapalVRIFPPELT-GDGTLRVHDTGIGLTEAQVHELLaTIGRSSKRDElgfSRHEFLGQFGIG-LLSCFLVADEIR 122
                  578********98888899*****99999988865.69*******************775799999997755558999*******.89********** PP

  HATPase_c_3  90 vitkkegesst 100
                  v+t++ +e ++
   KIR64428.1 123 VVTRHADEPTV 133
                  *****999886 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.2e-09   1.3e-05      10     109 ..      28     166 ..      23     169 .. 0.65

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 2.2e-09
                 HHHHHHHHHHH.....HS.TTTEEEEEEEEEE..TEEEEEEEESSSSSTTHHHTGTCSTTCH.......HCSTCHT.STSSSHHHHHH.......HHHH CS
   HATPase_c  10 isnlvdNavkf.....at.kageieveikase..ddlvisveDnGiGipkedlkklfekfsq.......ddstkrg.gggtGlGlsiv.......kklv 85 
                 +++l++Nav++     a+ ++    v+i ++e  +d +++v D+GiG++++++++l +   +         s+  +  g++G+Gl  +       +   
  KIR64428.1  28 VRELMQNAVDAitarrAGePDAPALVRIFPPEltGDGTLRVHDTGIGLTEAQVHELLATIGRsskrdelGFSRH-EfLGQFGIGLLSCflvadeiR--- 122
                 78999999999875542224445589999766789***************999955553333213443322222.235999999999955555431... PP

                 HHTTTEEEE............................EEETTTEEEEEEEEE CS
   HATPase_c  86 elmgGeiwv............................esepgrGttftftlp 109
                         v                            +++p+ Gtt+t+ ++
  KIR64428.1 123 --------VvtrhadeptvlwtgyadgryavevapagQQRPEPGTTVTLVPR 166
                 ........22223333333666666666666888888777777****99876 PP

>> HSP90  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   5.3e-08   0.00032     155     209 ..     265     319 ..     257     361 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.3e-08
                 EEEETTEEEESXXTTSSXGGGTTXEEEEEESSSXSSSTHHHHHTCHHHHHHHHHH CS
       HSP90 155 kLYvrrVfitdefedllPkyLsFvkGvvdsddLPLNvsREtlqqnkilkvikkkl 209
                 ++Y +r ++t++++ llP++  F + vvd+ +L    sRE l ++++l   +  l
  KIR64428.1 265 RVYLKRMLLTEHADGLLPDWAFFAHCVVDAGELRPTASREALYEDALLTATREAL 319
                 78**********************************************9888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4020.37
//
Query:       KIR64429.1  [L=945]
Description: hypothetical protein TK50_01725 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-09   36.8  62.8    0.00015   22.0   1.4    9.4 10  TPR_12    Tetratricopeptide repeat
    3.4e-05   23.7   6.9         27    5.3   0.0    7.8  8  TPR_8     Tetratricopeptide repeat
    8.3e-05   22.7   1.2       0.17   12.1   0.3    4.6  4  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
    0.00042   20.9   1.8    0.00042   20.9   1.8   12.8 13  TPR_16    Tetratricopeptide repeat
     0.0015   18.5  38.5       0.13   12.4   1.1    8.9 10  TPR_2     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.022   14.7   0.7       0.33   10.9   0.2    3.4  3  HTH_15    Helix-turn-helix domain of alkylmercury lyase
      0.027   14.5  21.4          6    7.1   0.3    9.0 10  TPR_7     Tetratricopeptide repeat
        1.4    8.9  64.5      0.091   12.7   1.3   12.2 13  TPR_10    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.49   1.1e+03      57      70 ..     141     154 ..     117     159 .. 0.77
   2 !    9.5   1.0   0.00051       1.1      12      76 ..     177     237 ..     173     238 .. 0.87
   3 ?   -2.7   0.1       3.4   7.6e+03      57      74 ..     255     272 ..     251     295 .. 0.69
   4 ?   -1.0   0.2         1   2.3e+03      20      36 ..     453     469 ..     438     479 .. 0.70
   5 !   11.5   9.5   0.00013      0.29       6      68 ..     479     539 ..     474     544 .. 0.91
   6 ?    2.3   1.7     0.092   2.1e+02       3      48 ..     554     598 ..     552     619 .. 0.79
   7 !   22.0   1.4   6.5e-08   0.00015       9      71 ..     633     692 ..     629     693 .. 0.92
   8 !   12.2   4.4   7.7e-05      0.17       7      76 ..     710     777 ..     705     778 .. 0.95
   9 ?    1.7   0.0      0.14   3.2e+02      52      69 ..     881     898 ..     841     904 .. 0.69
  10 !    8.9   0.0   0.00079       1.8      10      66 ..     881     933 ..     872     934 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.49
      TPR_12  57 algryeeAlellee 70 
                   g+ e+A+++++e
  KIR64429.1 141 HVGDAEAAERWYQE 154
                 45777777777776 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00051
      TPR_12  12 vlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                  l++ gr+deA +l e +l+ +     ++ p++  +l +L   y+++gr ++A+++++ea+++++
  KIR64429.1 177 HLAHVGRHDEAVALAEPVLAGRLTC--TEQPQA--ILTALLVPYLRSGRGDAARDAHREAYRRLR 237
                 68999*****************777..777775..78888888******************9876 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.4
      TPR_12  57 algryeeAlelleealai 74 
                 ++g+ + A+e+ e+ l+ 
  KIR64429.1 255 LTGNEARAVEIVERHLDW 272
                 456666666666666654 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1
      TPR_12  20 deAlellekaleiarrl 36 
                 + A+e  ++al+++r+l
  KIR64429.1 453 QAAQEANRAALAAYREL 469
                 44555556666666666 PP

  == domain 5  score: 11.5 bits;  conditional E-value: 0.00013
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                 + +l+a+l+  g+ +e l+l + a +       +d  + a+++  L+ ++  l r+eeAl++ 
  KIR64429.1 479 AGRLGALLCLTGDGEEGLALARDAADFLAGQ--GDARERAAAYDRLALALAHLQRWEEALAAA 539
                 568*************************887..8889**********************9875 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.092
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattl 48 
                 a+++ ++a+vl +l+r +e ++  e a+++ r++  ++   ta+tl
  KIR64429.1 554 ARVALHRAHVLEELERPEEFRAAAELARRLTREVGVGEL-VTAATL 598
                 666669*************************99944433.333333 PP

  == domain 7  score: 22.0 bits;  conditional E-value: 6.5e-08
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 +a +l+ + r +eA e + +a+ ++ + +G d    a  +  L+ +yra+gr++eA e  eea
  KIR64429.1 633 RARALLSADRVAEAVEDFAEAVTLCVE-QGADG--DAFLRWELANAYRAAGRPAEAAEVAEEA 692
                 578899999****************65.58888..**************************99 PP

  == domain 8  score: 12.2 bits;  conditional E-value: 7.7e-05
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdh.pltattlrnLgrlyralgryeeAlelleealaiae 76 
                 + la ++  lg+++ Al+ll++    ar+l Gpd+ p  a++l   g l++ ++r + A +++ ea  +++
  KIR64429.1 710 HLLAGIYVDLGELEPALALLDQL---ARNLDGPDNlPHRAQVLEEAGGLLYDADRDALAAQRFAEAATAYR 777
                 469********************...9999************************************99886 PP

  == domain 9  score: 1.7 bits;  conditional E-value: 0.14
      TPR_12  52 grlyralgryeeAlelle 69 
                 g+l+ ++gr+ eA+ ll+
  KIR64429.1 881 GELLVRAGRPGEAEPLLR 898
                 667778888888888876 PP

  == domain 10  score: 8.9 bits;  conditional E-value: 0.00079
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66 
                 +++l r+gr  eA+ ll+ +l      +   +  ++++   L+r++++lgr++eA +
  KIR64429.1 881 GELLVRAGRPGEAEPLLRNVLGGL---PP-GSRPASQAAWLLARVLDELGRPDEAAA 933
                 678888999999999999998887...64.4556799******************75 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.7   8.4e+03      15      26 ..     143     154 ..     140     158 .. 0.86
   2 ?   -1.5   0.9       1.9   4.2e+03       2      23 ..     517     538 ..     516     543 .. 0.84
   3 ?    1.0   0.0      0.29   6.4e+02       2      27 ..     555     580 ..     554     585 .. 0.86
   4 ?    0.3   0.1      0.49   1.1e+03      12      33 ..     602     623 ..     598     624 .. 0.84
   5 ?    2.7   0.0      0.08   1.8e+02       5      30 ..     631     656 ..     627     657 .. 0.87
   6 ?    5.3   0.0     0.012        27       6      28 ..     671     693 ..     668     694 .. 0.92
   7 ?    4.1   0.0      0.03        66       4      26 ..     709     731 ..     706     734 .. 0.84
   8 ?    4.2   0.0     0.027        61       3      22 ..     914     933 ..     912     934 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.7
                 T-HHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyek 26 
                 gd e+A+ +y++
  KIR64429.1 143 GDAEAAERWYQE 154
                 899****99986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.9
                 CHHHHHHHHHHHTT-HHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkey 23 
                  ay +l++++  l++ eeA ++
  KIR64429.1 517 AAYDRLALALAHLQRWEEALAA 538
                 68999********999999887 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.29
                 CHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyeka 27 
                 ++ ++ ++++++l++ ee  ++ e a
  KIR64429.1 555 RVALHRAHVLEELERPEEFRAAAELA 580
                 677889************99998866 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.49
                 HHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyekaleldpd 33 
                 + + d  e ++++ +ale +p+
  KIR64429.1 602 RATDDPAERIAACDEALETAPA 623
                 56789999**********9996 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.08
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekalel 30 
                 +  ++++l+  +  eA+e + +a++l
  KIR64429.1 631 VFRARALLSADRVAEAVEDFAEAVTL 656
                 56799999999************987 PP

  == domain 6  score: 5.3 bits;  conditional E-value: 0.012
                 HHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekal 28 
                  l+++y+  g+  eA e+ e+a+
  KIR64429.1 671 ELANAYRAAGRPAEAAEVAEEAV 693
                 69******************997 PP

  == domain 7  score: 4.1 bits;  conditional E-value: 0.03
                 HHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyek 26 
                  ++l+ iy +lg++e A + + +
  KIR64429.1 709 RHLLAGIYVDLGELEPALALLDQ 731
                 6899***********99887765 PP

  == domain 8  score: 4.2 bits;  conditional E-value: 0.027
                 HHHHHHHHHHHTT-HHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAke 22 
                 a ++l++++++lg+ +eA +
  KIR64429.1 914 AAWLLARVLDELGRPDEAAA 933
                 6689*************965 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.74   1.7e+03       3      26 ..     182     208 ..     180     232 .. 0.73
   2 ?    1.4   0.3      0.17   3.8e+02      62      78 ..     522     538 ..     496     565 .. 0.82
   3 !   12.1   0.3   7.7e-05      0.17      18      81 ..     658     731 ..     630     732 .. 0.79
   4 ?    2.9   0.0     0.056   1.3e+02      30      78 ..     881     934 ..     868     937 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.74
                 T-HHHHHHHHHHHH....HHH--HHHH CS
      ANAPC3   3 nnyknAiflaerlla...aetespeda 26 
                 +++++A+ lae++la   + te p+++
  KIR64429.1 182 GRHDEAVALAEPVLAgrlTCTEQPQAI 208
                 58999*******996444445555554 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.17
                 HHHHHHHTT-HHHHHHH CS
      ANAPC3  62 fAqcllkLkkyeeAiaa 78 
                 +A +l  L+++eeA+aa
  KIR64429.1 522 LALALAHLQRWEEALAA 538
                 56777788888888876 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 7.7e-05
                 HHH--HHHHHH...HHHHHHHTT-HHHHHHHHHCTSHHHC-H.......HHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  18 aetespedayl...lAlclylngqykrAyellrkaklnsksl.......gcrylfAqcllkLkkyeeAiaaLek 81 
                  e+  + da+l   lA ++  +g+  +A e++++a l    l       +cr l+A  +++L+++e A+a+L+ 
  KIR64429.1 658 VEQGADGDAFLrweLANAYRAAGRPAEAAEVAEEAVLGLDRLgaqaeadRCRHLLAGIYVDLGELEPALALLDQ 731
                 566666677776678****************999944444445577788*********************9975 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.056
                 HHHHHHTT-HHHHHHHHHCT.SHHHC-H....HHHHHHHHHHHHTT-HHHHHHH CS
      ANAPC3  30 AlclylngqykrAyellrka.klnsksl....gcrylfAqcllkLkkyeeAiaa 78 
                 ++ l ++g+  +A  llr+  +  +       +++ l+A++l +L++ +eA a+
  KIR64429.1 881 GELLVRAGRPGEAEPLLRNVlGGLPPGSrpasQAAWLLARVLDELGRPDEAAAV 934
                 566777777777777777776555544456779999**************9875 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       3.8   8.5e+03      18      31 ..      24      37 ..      23      43 .. 0.63
   2 !    6.5   0.8    0.0058        13      36      64 ..     131     159 ..     118     162 .. 0.84
   3 ?    1.0   0.1      0.32   7.1e+02      44      57 ..     178     191 ..     175     197 .. 0.81
   4 ?   -1.8   0.6       2.3   5.2e+03       8      25 ..     217     234 ..     216     239 .. 0.50
   5 ?   -2.2   3.1         3   6.7e+03      14      27 ..     287     300 ..     273     315 .. 0.64
   6 ?   -8.4  10.9         8   1.8e+04      14      63 ..     415     465 ..     399     471 .. 0.51
   7 ?   -3.2   8.1       6.5   1.5e+04       9      62 ..     448     504 ..     440     508 .. 0.70
   8 ?    3.9  17.7     0.038        85      16      65 ..     499     547 ..     494     550 .. 0.82
   9 ?   -0.5   7.1      0.91     2e+03      12      66 ..     572     623 ..     560     625 .. 0.81
  10 ?    3.5   0.9      0.05   1.1e+02      38      61 ..     631     654 ..     628     665 .. 0.78
  11 !    9.8  11.8   0.00057       1.3       3      63 ..     672     735 ..     670     743 .. 0.91
  12 ?    2.0  10.2      0.15   3.4e+02       5      58 ..     761     810 ..     757     816 .. 0.89
  13 !   20.9   1.8   1.9e-07   0.00042       4      56 ..     881     934 ..     878     944 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.8
      TPR_16 18 aaleaalkrdpssP 31
                aale++l+r+ s  
  KIR64429.1 24 AALEQLLRRADSGD 37
                46777777775544 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0058
      TPR_16  36 AllllgdaalrqgrlaeAaalyraalraa 64 
                  + ++ ++a + g+ ++A+ +y+++l+a 
  KIR64429.1 131 VHKHRYLVADHVGDAEAAERWYQEWLTAP 159
                 56778899*****************9654 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.32
      TPR_16  44 alrqgrlaeAaaly 57 
                 +++ gr++eA+al 
  KIR64429.1 178 LAHVGRHDEAVALA 191
                 67999999999876 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 2.3
      TPR_16   8 lragdyddAaaaleaalk 25 
                 lr+g+ d+A+ a ++a +
  KIR64429.1 217 LRSGRGDAARDAHREAYR 234
                 455555555555444444 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 3
      TPR_16  14 ddAaaaleaalkrd 27 
                 + Aaaal++a  ++
  KIR64429.1 287 ATAAAALRRAAGAG 300
                 34555555555555 PP

  == domain 6  score: -8.4 bits;  conditional E-value: 8
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgdaal.rqgrlaeAa.alyraalra 63 
                 ++A+aa+++   + + +P+  +A+ l  +a      + + Aa ++ raal+a
  KIR64429.1 415 AAALAAYDERFGASGQPPR-TAARRLELRAGElTDADGPQAAqEANRAALAA 465
                 5566666555555555553.33333333333313344444444444444433 PP

  == domain 7  score: -3.2 bits;  conditional E-value: 6.5
      TPR_16   9 ragdyddAaaaleaalkrdpssPdaaeAllllgdaalrq...grlaeAaalyraalr 62 
                 +a  +++A++a +aal+++++ Pd ++ +   g++ + +   g+ +e +al r a++
  KIR64429.1 448 DADGPQAAQEANRAALAAYRELPDPVREQVVAGRLGALLcltGDGEEGLALARDAAD 504
                 566688999999*******99999666555555555444444777777777777765 PP

  == domain 8  score: 3.9 bits;  conditional E-value: 0.038
      TPR_16  16 AaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 A+  +  +l+ +++  ++a+A+  l++a+++++r++eA+a+ + a+++a 
  KIR64429.1 499 ARD-AADFLAGQGDARERAAAYDRLALALAHLQRWEEALAAADLAAAEAD 547
                 444.449999999**************************66666665554 PP

  == domain 9  score: -0.5 bits;  conditional E-value: 0.91
      TPR_16  12 dyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraalraapd 66 
                 ++++Aa++++++++  ++  +  +A l++++a     + ++ + a++++al+ ap 
  KIR64429.1 572 EFRAAAELARRLTREVGVGELVTAATLAYARAT----DDPAERiAACDEALETAPA 623
                 699*************99988888888777765....6666666999999888886 PP

  == domain 10  score: 3.5 bits;  conditional E-value: 0.05
      TPR_16  38 lllgdaalrqgrlaeAaalyraal 61 
                  ++++a+l + r+aeA++ +++a+
  KIR64429.1 631 VFRARALLSADRVAEAVEDFAEAV 654
                 678899999999999997777766 PP

  == domain 11  score: 9.8 bits;  conditional E-value: 0.00057
      TPR_16   3 laraalragdyddAaaal.eaalkrdpssPd..aaeAllllgdaalrqgrlaeAaalyraalra 63 
                 la+a+++ag++++Aa+++ ea+l +d+   +  a + + ll+ ++  +g+l++A+al++ ++r+
  KIR64429.1 672 LANAYRAAGRPAEAAEVAeEAVLGLDRLGAQaeADRCRHLLAGIYVDLGELEPALALLDQLARN 735
                 8*****************999999997666688*************************999876 PP

  == domain 12  score: 2.0 bits;  conditional E-value: 0.15
      TPR_16   5 raalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyr 58 
                 r+al+a+++++Aa a+ ++  +     d  +A+   +da+   g++++A+ +++
  KIR64429.1 761 RDALAAQRFAEAATAY-RLAGAP---VDELRARRREADALNWSGDVPAAVRAVE 810
                 79**************.999999...99999*********99999999996655 PP

  == domain 13  score: 20.9 bits;  conditional E-value: 1.9e-07
      TPR_16   4 araalragdyddAaaaleaalkrdpssPd...aaeAllllgdaalrqgrlaeAaal 56 
                 + +++rag++ +A+++l+ +l   p  P    a +A++ll++++ ++gr +eAaa+
  KIR64429.1 881 GELLVRAGRPGEAEPLLRNVLGGLP--PGsrpASQAAWLLARVLDELGRPDEAAAV 934
                 6799*****************9886..55668*********************853 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       6.3   1.4e+04      15      26 ..     143     154 ..     140     154 .. 0.83
   2 ?   -2.7   0.0         4   9.1e+03      13      23 ..     180     190 ..     178     192 .. 0.76
   3 !    7.4   7.1    0.0024       5.4       1      28 [.     516     543 ..     516     546 .. 0.90
   4 ?   -3.9   0.0         8   1.8e+04      22      32 ..     612     622 ..     611     622 .. 0.77
   5 !    8.2   0.0    0.0014         3       7      30 ..     633     656 ..     630     657 .. 0.93
   6 !   12.4   1.1   5.9e-05      0.13       5      28 ..     670     693 ..     666     694 .. 0.90
   7 ?    1.1   0.1      0.24   5.4e+02       5      27 ..     710     732 ..     707     735 .. 0.87
   8 ?    0.5   1.0      0.38   8.5e+02      12      27 ..     764     779 ..     761     779 .. 0.84
   9 ?   -1.8   0.0       2.1   4.7e+03       8      27 ..     881     900 ..     881     901 .. 0.82
  10 ?    4.3   0.0     0.023        52       3      22 ..     914     933 ..     912     934 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.3
       TPR_2  15 gdyeeAleafek 26 
                 gd e A++++++
  KIR64429.1 143 GDAEAAERWYQE 154
                 788999999986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4
       TPR_2  13 klgdyeeAlea 23 
                 + g+++eA+++
  KIR64429.1 180 HVGRHDEAVAL 190
                 66999***986 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0024
       TPR_2   1 aealynlGlayyklgdyeeAleafekAl 28 
                 a a+ +l+la+++l+++eeAl+a + A 
  KIR64429.1 516 AAAYDRLALALAHLQRWEEALAAADLAA 543
                 689*******************988776 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 8
       TPR_2  22 eafekAleldP 32 
                 +a+++Ale +P
  KIR64429.1 612 AACDEALETAP 622
                 68899999776 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0014
       TPR_2   7 lGlayyklgdyeeAleafekAlel 30 
                 +++a++ +++ +eA+e+f +A+ l
  KIR64429.1 633 RARALLSADRVAEAVEDFAEAVTL 656
                 899******************987 PP

  == domain 6  score: 12.4 bits;  conditional E-value: 5.9e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAl 28 
                 ++l++ay+++g+++eA+e  e+A+
  KIR64429.1 670 WELANAYRAAGRPAEAAEVAEEAV 693
                 68********************96 PP

  == domain 7  score: 1.1 bits;  conditional E-value: 0.24
       TPR_2   5 ynlGlayyklgdyeeAleafekA 27 
                 + l+ +y  lg++e Al+++++ 
  KIR64429.1 710 HLLAGIYVDLGELEPALALLDQL 732
                 678999************99986 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 0.38
       TPR_2  12 yklgdyeeAleafekA 27 
                 +++++++eA+ a++ A
  KIR64429.1 764 LAAQRFAEAATAYRLA 779
                 6789*********865 PP

  == domain 9  score: -1.8 bits;  conditional E-value: 2.1
       TPR_2   8 GlayyklgdyeeAleafekA 27 
                 G+++ ++g++ eA+ +++ +
  KIR64429.1 881 GELLVRAGRPGEAEPLLRNV 900
                 678899*******9888765 PP

  == domain 10  score: 4.3 bits;  conditional E-value: 0.023
       TPR_2   3 alynlGlayyklgdyeeAle 22 
                 a + l++++ +lg+++eA++
  KIR64429.1 914 AAWLLARVLDELGRPDEAAA 933
                 56789*************85 PP

>> HTH_15  Helix-turn-helix domain of alkylmercury lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.9   6.6e+03      33      56 ..     247     270 ..     239     272 .. 0.84
   2 ?   10.9   0.2   0.00015      0.33       8      55 ..     565     614 ..     560     623 .. 0.81
   3 ?   -2.1   0.0       1.7   3.9e+03      13      29 ..     907     924 ..     883     929 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.9
      HTH_15  33 GepVtveeLAaatgrsveevrqaL 56 
                 G+ V   +L +  +r+ve v++ L
  KIR64429.1 247 GDHVEFCTLTGNEARAVEIVERHL 270
                 8888999999999******99987 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00015
      HTH_15   8 eslakgeeggssaellrpLlrlLakGepVtveeLA..aatgrsveevrqa 55 
                 e+l ++ee   +ael+r L r+   Ge Vt ++LA   at  + e++++ 
  KIR64429.1 565 EELERPEEFRAAAELARRLTREVGVGELVTAATLAyaRATDDPAERIAAC 614
                 6789999999************************8224677788998764 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.7
      HTH_15  13 geeggs.saellrpLlrl 29 
                 g++++s +a+ll  +l++
  KIR64429.1 907 GSRPASqAAWLLARVLDE 924
                 333333134565555555 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.1   2.4e+03      12      29 ..     142     157 ..     139     165 .. 0.79
   2 ?   -1.1   0.0       1.2   2.6e+03      12      23 ..     181     192 ..     175     201 .. 0.75
   3 ?    0.3   0.0      0.42   9.4e+02      16      33 ..     260     278 ..     252     281 .. 0.84
   4 ?    2.4   2.1     0.086   1.9e+02       1      19 [.     518     536 ..     518     547 .. 0.93
   5 ?   -0.2   0.0      0.57   1.3e+03       7      24 ..     642     659 ..     636     664 .. 0.76
   6 ?    7.1   0.3    0.0027         6       5      25 ..     672     692 ..     670     702 .. 0.85
   7 ?    4.2   0.0     0.024        53       3      25 ..     710     732 ..     708     742 .. 0.84
   8 ?   -1.6   0.1       1.7   3.8e+03      13      28 ..     767     780 ..     764     789 .. 0.80
   9 ?   -2.2   0.0       2.6   5.9e+03       6      26 ..     881     901 ..     881     905 .. 0.83
  10 ?    3.7   0.1     0.034        76       4      23 ..     917     936 ..     914     945 .] 0.86

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.1
       TPR_7  12 lGdyeeAielyeqsLalt 29 
                 +Gd e A++ y++   lt
  KIR64429.1 142 VGDAEAAERWYQE--WLT 157
                 7999********9..776 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.2
       TPR_7  12 lGdyeeAielye 23 
                 +G+++eA+ l e
  KIR64429.1 181 VGRHDEAVALAE 192
                 8******99865 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.42
       TPR_7  16 eeAielyeqsL.altkdpe 33 
                 ++A+e+ e++L  l+++p+
  KIR64429.1 260 ARAVEIVERHLdWLDRAPT 278
                 79***********999986 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.086
       TPR_7   1 aLlnLarlysrlGdyeeAi 19 
                 a+++La +   l+++eeA+
  KIR64429.1 518 AYDRLALALAHLQRWEEAL 536
                 799***************8 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.57
       TPR_7   7 rlysrlGdyeeAielyeq 24 
                 r+ +++ d++eA++l+ +
  KIR64429.1 642 RVAEAVEDFAEAVTLCVE 659
                 55677899*****99865 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.0027
       TPR_7   5 LarlysrlGdyeeAielyeqs 25 
                 La++y++ G+ +eA+e+ e++
  KIR64429.1 672 LANAYRAAGRPAEAAEVAEEA 692
                 9***************99983 PP

  == domain 7  score: 4.2 bits;  conditional E-value: 0.024
       TPR_7   3 lnLarlysrlGdyeeAielyeqs 25 
                 + La +y++lG+ e A+ l+ q+
  KIR64429.1 710 HLLAGIYVDLGELEPALALLDQL 732
                 68**************9999994 PP

  == domain 8  score: -1.6 bits;  conditional E-value: 1.7
       TPR_7  13 GdyeeAielyeqsLal 28 
                 ++++eA++ y+   a 
  KIR64429.1 767 QRFAEAATAYRL--AG 780
                 7899****9998..65 PP

  == domain 9  score: -2.2 bits;  conditional E-value: 2.6
       TPR_7   6 arlysrlGdyeeAielyeqsL 26 
                 ++l +r G+  eA+ l++ +L
  KIR64429.1 881 GELLVRAGRPGEAEPLLRNVL 901
                 67889999*9******99877 PP

  == domain 10  score: 3.7 bits;  conditional E-value: 0.034
       TPR_7   4 nLarlysrlGdyeeAielye 23 
                  Lar+  +lG+ +eA+ +  
  KIR64429.1 917 LLARVLDELGRPDEAAAVRA 936
                 69*************98865 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.3   2.9e+03      15      27 ..     142     154 ..     140     157 .. 0.88
   2 ?    7.8   0.0    0.0013         3      12      31 ..     178     197 ..     176     199 .. 0.87
   3 ?    3.7   0.5     0.027        61      12      32 ..     216     236 ..     216     240 .. 0.89
   4 ?   -0.2   0.1      0.46     1e+03      19      35 ..     453     469 ..     445     472 .. 0.84
   5 ?    1.6   0.2      0.12   2.7e+02       8      29 ..     482     503 ..     479     505 .. 0.92
   6 ?    5.4   5.3    0.0077        17       2      26 ..     516     540 ..     515     544 .. 0.89
   7 ?   -2.0   1.1       1.6   3.6e+03       9      35 ..     561     587 ..     554     588 .. 0.82
   8 ?    5.3   0.2    0.0086        19       9      32 ..     634     657 ..     633     659 .. 0.91
   9 ?   12.7   1.3     4e-05     0.091       8      29 ..     672     693 ..     671     696 .. 0.95
  10 ?    5.3   0.1    0.0087        19       4      27 ..     708     731 ..     707     734 .. 0.91
  11 ?   -4.0   0.7       6.9   1.5e+04      12      32 ..     756     776 ..     749     777 .. 0.61
  12 ?    0.5   0.0      0.28   6.3e+02      11      29 ..     883     901 ..     881     902 .. 0.83
  13 ?    2.9   0.1     0.049   1.1e+02       8      23 ..     918     933 ..     917     937 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.3
      TPR_10  15 rgrydeAeallee 27 
                 +g+ ++Ae++++e
  KIR64429.1 142 VGDAEAAERWYQE 154
                 68999*****997 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0013
      TPR_10  12 lrqrgrydeAealleealai 31 
                 l ++gr+deA+al+e +la 
  KIR64429.1 178 LAHVGRHDEAVALAEPVLAG 197
                 5789***********99985 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.027
      TPR_10  12 lrqrgrydeAealleealair 32 
                 + + gr+d+A++ ++ea+++ 
  KIR64429.1 216 YLRSGRGDAARDAHREAYRRL 236
                 6789*************9875 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.46
      TPR_10  19 deAealleealairrrl 35 
                 ++A +  + ala++r+l
  KIR64429.1 453 QAAQEANRAALAAYREL 469
                 778888899******97 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.12
      TPR_10   8 LanalrqrgrydeAealleeal 29 
                 L+++l+ +g+++e +al+++a 
  KIR64429.1 482 LGALLCLTGDGEEGLALARDAA 503
                 99*****************995 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.0077
      TPR_10   2 AsslnNLanalrqrgrydeAealle 26 
                 A+++  La al +++r++eA+a ++
  KIR64429.1 516 AAAYDRLALALAHLQRWEEALAAAD 540
                 99*******************9765 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 1.6
      TPR_10   9 analrqrgrydeAealleealairrrl 35 
                 a++l ++ r +e +a +e a ++ r++
  KIR64429.1 561 AHVLEELERPEEFRAAAELARRLTREV 587
                 788888999999999999999988886 PP

  == domain 8  score: 5.3 bits;  conditional E-value: 0.0086
      TPR_10   9 analrqrgrydeAealleealair 32 
                 a+al +  r +eA++++ ea+ ++
  KIR64429.1 634 ARALLSADRVAEAVEDFAEAVTLC 657
                 7899999**************987 PP

  == domain 9  score: 12.7 bits;  conditional E-value: 4e-05
      TPR_10   8 LanalrqrgrydeAealleeal 29 
                 Lana+r+ gr +eA + +eea+
  KIR64429.1 672 LANAYRAAGRPAEAAEVAEEAV 693
                 9*******************97 PP

  == domain 10  score: 5.3 bits;  conditional E-value: 0.0087
      TPR_10   4 slnNLanalrqrgrydeAeallee 27 
                 +++ La ++ ++g+++ A+all++
  KIR64429.1 708 CRHLLAGIYVDLGELEPALALLDQ 731
                 8899*****************987 PP

  == domain 11  score: -4.0 bits;  conditional E-value: 6.9
      TPR_10  12 lrqrgrydeAealleealair 32 
                 l++  r + A + + ea  ++
  KIR64429.1 756 LYDADRDALAAQRFAEAATAY 776
                 555566666666666666555 PP

  == domain 12  score: 0.5 bits;  conditional E-value: 0.28
      TPR_10  11 alrqrgrydeAealleeal 29 
                 +l + gr  eAe ll+ +l
  KIR64429.1 883 LLVRAGRPGEAEPLLRNVL 901
                 67789*********99776 PP

  == domain 13  score: 2.9 bits;  conditional E-value: 0.049
      TPR_10   8 LanalrqrgrydeAea 23 
                 La++l ++gr deA a
  KIR64429.1 918 LARVLDELGRPDEAAA 933
                 9*************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (945 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.54
# Mc/sec: 5237.30
//
Query:       KIR64430.1  [L=209]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-17   63.3   1.0    1.3e-17   63.3   1.0    1.7  2  TetR_N     Bacterial regulatory proteins, tetR family
    1.7e-08   34.7   0.0    2.8e-08   34.0   0.0    1.4  1  TetR_C_24  Tetracyclin repressor-like, C-terminal domain
     0.0021   18.8   5.7     0.0033   18.1   5.7    1.3  1  TetR_C_15  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   1.0   2.2e-21   1.3e-17       1      47 []      27      73 ..      27      73 .. 0.98
   2 ?   -3.2   0.3       1.3   7.8e+03      16      26 ..     195     205 ..     193     207 .. 0.70

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 2.2e-21
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                Il+ A+ lfa rGy+++++++I ++AGv+ +alY++F++Ke++l+a+
  KIR64430.1 27 ILEIAVGLFAARGYHGVSMDDIGAAAGVTGPALYHHFAGKEAMLAAA 73
                99******************************************996 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.3
                 T--HHHHHHHH CS
      TetR_N  16 attvreIAkrA 26 
                 a+t++++ ++A
  KIR64430.1 195 AATLAALLAEA 205
                 67788877777 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   4.6e-12   2.8e-08       2      87 ..      94     177 ..      93     179 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 4.6e-12
                 SSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB-SS-HHHHHHHHHHHHHCH CS
   TetR_C_24   2 gspaerLralvrahveviaeereeaavllrelraLspehreeiralrreyerllrdlieeGvaagefedldpklaalailgmlnwv 87 
                 ++p++ L++l+  hve+ + +++ +a+ l+el+ L++e r++ir+l+r y +++  ++++    g + d +++++a a +g++n++
  KIR64430.1  94 DDPRAALESLIDFHVEFALANPAVIALHLHELDRLPDEPRRRIRRLQRLYVEQWVTVLTALHP-G-LPDGEARVLAHAAFGLMNST 177
                 7999******************************************************98654.4.589999************98 PP

>> TetR_C_15  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   5.7   5.6e-07    0.0033       1     101 [.      95     197 ..      95     203 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 5.6e-07
   TetR_C_15   1 pLeealdalvdallaahrenpalrrvlleea.pslgel.elvealeqriaealaalLarrrpelppedlelaafvaveaveallhlaleedpadreali 97 
                 ++++al+ l+d  +++  +npa+ ++ l+e    ++e  ++ ++l++  +e+  ++L++  p lp+ +++++a+ a+ +++++  l  e d+++r+al 
  KIR64430.1  95 DPRAALESLIDFHVEFALANPAVIALHLHELdRLPDEPrRRIRRLQRLYVEQWVTVLTALHPGLPDGEARVLAHAAFGLMNSTPFLGGEVDRQRRAALL 193
                 689**********************98888736667779*****************************************************8888887 PP

   TetR_C_15  98 aelk 101
                 + ++
  KIR64430.1 194 RAAT 197
                 7655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1439.48
//
Query:       KIR64431.1  [L=254]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.027   14.6   0.0      0.062   13.5   0.0    1.6  1  HTH_17    Helix-turn-helix domain
       0.14   12.2   0.1       0.24   11.5   0.1    1.3  1  DUF2750   Protein of unknown function (DUF2750)


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     7e-06     0.062      11      45 ..      23      58 ..      15      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7e-06
      HTH_17 11 Lgvsrstvyrlirrgelpaak.iGrrwriprsdlee 45
                 g++++tv r+++ g++p ++ +G   ri  +d+ +
  KIR64431.1 23 IGLHPKTVARWANPGRIPQTRhRGEVARILGKDVAD 58
                599**************9999899889999999876 PP

>> DUF2750  Protein of unknown function (DUF2750)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   2.7e-05      0.24      32      84 ..      54     106 ..      47     121 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.7e-05
     DUF2750  32 edvlpvWsseefAkawakeewadykpkeisleeFleewlpgLeedgvlvgvfp 84 
                 +dv  +W+++ + + +    w d + +++ l  F   w+pgL + ++ + v +
  KIR64431.1  54 KDVADLWPDALRREPVWFRPWVDIEREAVALRAFQLAWVPGLLQTEAYARVTF 106
                 678889************************************99999888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2010.10
//
Query:       KIR64432.1  [L=61]
Description: regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-22   78.1   0.1    4.2e-22   78.0   0.1    1.0  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.1   2.3e-26   4.2e-22       1      54 []       4      58 ..       4      58 .. 0.89

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 2.3e-26
      DUF397  1 atWrKSsySgggggnCVEvaalpda......vavRDSkdpdgpvLtftpaewaaFlagvk 54
                a+WrKS++Sgg+gg+CVEv     a      v vRD+kd+dg++L f+pa+w++Fl+ +k
  KIR64432.1  4 AQWRKSTRSGGNGGDCVEV-----AdnlpgvVLVRDTKDRDGGTLSFSPASWRGFLTLAK 58
                69*****************.....444455689***********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 438.22
//
Query:       KIR64433.1  [L=445]
Description: biotin carboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-66  224.1   0.1    2.1e-66  223.4   0.1    1.2  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    1.1e-42  145.1   0.1    2.1e-42  144.2   0.1    1.5  1  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    1.9e-35  121.2   0.0    3.4e-35  120.4   0.0    1.4  1  Biotin_carb_C    Biotin carboxylase C-terminal domain
    8.5e-09   35.2   0.0    1.6e-08   34.4   0.0    1.4  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    3.5e-05   23.3   0.0    0.00037   20.0   0.1    2.2  2  ATP-grasp_5      ATP-grasp domain
     0.0038   16.8   0.0     0.0092   15.6   0.0    1.6  2  ATP-grasp        ATP-grasp domain
  ------ inclusion threshold ------
      0.023   14.8   0.1      0.094   12.9   0.1    2.1  1  LAL_C2           L-amino acid ligase C-terminal domain 2
      0.099   12.1   0.7       0.52    9.7   0.1    2.3  3  AP_endonuc_2     Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.4   0.1   9.5e-70   2.1e-66       1     206 [.     115     320 ..     115     322 .. 0.99

  Alignments for each domain:
  == domain 1  score: 223.4 bits;  conditional E-value: 9.5e-70
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  Dk +a++++++++vpv+p+++ p+ +l+ a+a+a+eigyPv++kaa+g+GG Gm+va +e+ l+  + k +a a+  fg+ +vl+e++  + +++Ev+
   KIR64433.1 115 DKINARNLMAAAGVPVAPGTTDPAADLDAAVAAAAEIGYPVMVKAAAGGGGMGMGVAADEAALRTEYDKVRAFAERMFGDGSVLIERYFPRVRHVEVQ 212
                  99************************************************************************************************ PP

                  EEEETTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HH CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlv 196
                  +l  a+g v+ ++ere+s+q+r+qk++e+ Ps+++++e r +  +aav++ ++vg+++agtve l+dp ++e++++E+NtRl+ve++++e + G+dlv
   KIR64433.1 213 ILGLADGRVVALGERECSVQRRNQKLVEESPSPAVSPELRARFLAAAVRAGEAVGYRNAGTVECLFDPATQEFFFLEMNTRLQVEHPVTELVYGVDLV 310
                  ************************************************************************************************** PP

                  HHHHHHHTT- CS
  CPSase_L_D2 197 keaakialge 206
                  +e++++a+g 
   KIR64433.1 311 EEQLRVAAGL 320
                  *******995 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   0.1   9.2e-46   2.1e-42       1     110 []       1     110 [.       1     110 [. 0.98

  Alignments for each domain:
  == domain 1  score: 144.2 bits;  conditional E-value: 9.2e-46
                    ---EEEE---HHHHHHHHHHHHHTT-EEEEEEEGGGTTSHHHHHSSEEEEEESSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTTT-HHHHHHHH CS
  Biotin_carb_N   1 kikkvlianrGeiAvriiravrelgietvavyseedanslhvreadeavelgpasasesYlniekivkaakesgadavhpGyGflsEnaefaeave 96 
                    +i+++l+anrGeiA riir++++lgi+++av+se+da  ++v+eadeav++gpa++++sY n+e+i++aak++ga+a+hpGyGflsEna+fa++ve
     KIR64433.1   1 MIESLLVANRGEIARRIIRTANRLGIRAIAVHSEADAGLPFVTEADEAVCVGPANPAQSYRNVEAILAAAKSTGAQAIHPGYGFLSENADFARTVE 96 
                    6899******************************************************************************************** PP

                    HTT-EESSS-HHHH CS
  Biotin_carb_N  97 eagivfiGPsaeal 110
                    ++g++++GP a+a+
     KIR64433.1  97 SSGLIWVGPGADAI 110
                    *********99876 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   0.0   1.5e-38   3.4e-35       1     107 [.     337     442 ..     337     443 .. 0.98

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 1.5e-38
                    EEEEESEETTTTTEE--CE-SEEE---STTEEEEE---TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEESS-BSHHHHHHHHH-HHH CS
  Biotin_carb_C   1 eaRinaEdpeknflpssGkvtelelpegpgvRvdsgveegsevspyyDsllaKlivhgetreealarlrraLaelrieGvktnieflrailedeef 96 
                    e+RinaEdp++ flp +G +t++++p+g+gvRvdsg+  g++v+p+yDsllaKliv g++r+ea++r+r a+a ++++G k n++f++++le+eef
     KIR64433.1 337 ELRINAEDPKR-FLPGPGVITTWREPAGEGVRVDSGYVDGNTVTPFYDSLLAKLIVNGRDRAEAIERARAAVAAFEVAGPKCNLPFFAELLENEEF 431
                    89*******99.************************************************************************************ PP

                    HHT---TTTCC CS
  Biotin_carb_C  97 akgeldtkfle 107
                     +g++dt++++
     KIR64433.1 432 LSGDYDTGIVS 442
                    *******9876 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   7.1e-12   1.6e-08      28     174 ..     144     292 ..     122     293 .. 0.78

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 7.1e-12
                      HHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHH......HHHHHHTT-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HH CS
  Dala_Dala_lig_C  28 lekveeelgypvfVKpareGSSvGvskveseeelke......aieeafkydekvlvEeai.egreievavlgneklevsevgeivvkkgfydye 114
                        +  +e+gypv+VK+a  G  +G+  +  e+ l+       a++e +  d +vl+E++  + r +ev +lg  + +v  +ge+  +    + +
       KIR64433.1 144 AVAAAAEIGYPVMVKAAAGGGGMGMGVAADEAALRTeydkvrAFAERMFGDGSVLIERYFpRVRHVEVQILGLADGRVVALGERECSV--QRRN 235
                      3466789*****************99988888877511112244455556999*******************9999999999988765..4667 PP

                      HHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEE.ETTTEEEEEEEES CS
  Dala_Dala_lig_C 115 akysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDffl.teegeivlnEvNt 174
                      +k +++        ++++e +++  ++a++a +a++ r  + v  +   +++e+++ E+Nt
       KIR64433.1 236 QKLVEE---SP-SPAVSPELRARFLAAAVRAGEAVGYRNAGTVECLFdPATQEFFFLEMNT 292
                      777533...33.345899999***********************98867899********9 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   1.7e-07   0.00037      13      54 ..     117     160 ..     111     190 .. 0.92
   2 ?    0.5   0.0      0.15   3.3e+02     133     185 ..     375     426 ..     373     436 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.7e-07
  ATP-grasp_5  13 aeakelleaygipvvetrl..assaeeaveaaeeigypvvlKiv 54 
                   +a++l++a g+pv++     a++ ++av+aa+eigypv +K +
   KIR64433.1 117 INARNLMAAAGVPVAPGTTdpAADLDAAVAAAAEIGYPVMVKAA 160
                  6799***********988777*********************86 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.15
  ATP-grasp_5 133 Gtavevlkdvavalpplnstlareliertkaskllkgvrgekkadlaaleell 185
                  G +v  + d  +a   +n ++ +e+ier +a+ ++ +v g  k++l  ++ell
   KIR64433.1 375 GNTVTPFYDSLLAKLIVNGRDRAEAIERARAAVAAFEVAGP-KCNLPFFAELL 426
                  67777777888888889999******************999.99998888777 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       4.2   9.4e+03     124     142 ..      12      30 ..       8      36 .. 0.78
   2 !   15.6   0.0   4.1e-06    0.0092      14     144 ..     138     277 ..     123     294 .. 0.71

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 4.2
                 HHHHHHHHHHTSSEEEEEE CS
   ATP-grasp 124 eiakkiveeLggvGvfavE 142
                 eia++i+++ + +G+ a+ 
  KIR64433.1  12 EIARRIIRTANRLGIRAIA 30 
                 6889999999999988875 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 4.1e-06
                 ECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEE.EEEE.T CS
   ATP-grasp  14 veskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvrsaeGetafypvve.tvqe.d 102
                 +++ +++ +aa+e+g+pv+vK +  g  G G  v  +e+ l++  + +        ++++v++E + p  + + v +   a+G+++++   e  vq+ +
  KIR64433.1 138 AADLDAAVAAAAEIGYPVMVK-AAAGGGGMGMGVAADEAALRTEYDKVrafaermfGDGSVLIERYFPRVRHVEVQILGLADGRVVALGEREcSVQRrN 235
                 56777888999**********.777779**********9999888877788999999**********99988888888888898777654331333313 PP

                 T.EEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEE CS
   ATP-grasp 103 g.ilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElF 144
                 +  +++s  pa vs +  ++  + a ++ e++g+    +vE+ 
  KIR64433.1 236 QkLVEESPSPA-VSPELRARFLAAAVRAGEAVGYRNAGTVECL 277
                 31344444554.6667777777777778888888777777763 PP

>> LAL_C2  L-amino acid ligase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.2e-05     0.094      29      75 ..     368     412 ..     347     413 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
      LAL_C2  29 veltvkpGdevrpprssgdrlGyviatgdtaeeaeaaaeeaaaeiri 75 
                 v+  +  G +v+p+ +s   l+  i+ g++++ea ++a++a+a+ ++
  KIR64433.1 368 VDSGYVDGNTVTPFYDSL--LAKLIVNGRDRAEAIERARAAVAAFEV 412
                 555566788888888887..999*******************99876 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00023      0.52      71     137 ..      13      86 ..       6     122 .. 0.68
   2 ?    0.3   0.1      0.18   4.1e+02      68      92 ..     109     133 ..      58     191 .. 0.46
   3 ?   -2.8   0.0       1.6   3.5e+03      65      76 ..     396     407 ..     336     429 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00023
                   HHHHHHHHHHHHTBSEEEEEBCC...GBCTTTSGHH.........HHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTS CS
  AP_endonuc_2  71 alkraielaaaLGapllvlhpGt...agagpkgsee.........eawerlaeslneladyaekegvklalEtlagsgv 137
                    ++r i++a++LG++ + +h+          +   e         ++ ++ +++++++++ a+  g   a++++ g+ +
    KIR64433.1  13 IARRIIRTANRLGIRAIAVHSEAdagL----PFVTEadeavcvgpANPAQSYRNVEAILAAAKSTG-AQAIHPGYGFLS 86 
                   6799****************7755552....33333333366666777777777777777765444.345555555554 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.18
                   HHHHHHHHHHHHHHHTBSEEEEEBC CS
  AP_endonuc_2  68 svdalkraielaaaLGapllvlhpG 92 
                   +++a+ + i + + + a  + + pG
    KIR64433.1 109 AISAMGDKINARNLMAAAGVPVAPG 133
                   3444444443333333333333333 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.6
                   HHHHHHHHHHHH CS
  AP_endonuc_2  65 reesvdalkrai 76 
                   r+e++++++ a+
    KIR64433.1 396 RAEAIERARAAV 407
                   333344443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3195.77
//
Query:       KIR64434.1  [L=191]
Description: peptidase M7 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-33  114.0   2.6    7.5e-33  113.5   2.6    1.2  1  Peptidase_M7   Streptomyces extracellular neutral proteinase 
    0.00016   21.3   5.2    0.00025   20.7   5.1    1.3  1  Peptidase_M57  Dual-action HEIGH metallo-peptidase
    0.00093   19.1   0.0     0.0016   18.3   0.0    1.5  1  Peptidase_M43  Pregnancy-associated plasma protein-A
     0.0032   17.6   0.4     0.0043   17.2   0.4    1.2  1  Reprolysin_5   Metallo-peptidase family M12
     0.0032   16.7   0.0     0.0052   16.0   0.0    1.2  1  DUF4953        Met-zincin
  ------ inclusion threshold ------
      0.025   14.2   0.4      0.038   13.6   0.4    1.6  1  Reprolysin_4   Metallo-peptidase family M12B Reprolysin-like
      0.027   12.8   0.0      0.028   12.7   0.0    1.2  1  Peptidase_M6   Immune inhibitor A peptidase M6
      0.028   14.0   0.0      0.039   13.6   0.0    1.2  1  Astacin        Astacin (Peptidase family M12A)
       0.03   14.2   0.0      0.069   13.0   0.0    1.3  1  Peptidase_M10  Matrixin
       0.13   12.2   0.0        0.2   11.6   0.0    1.2  1  Peptidase_M54  Peptidase family M54


Domain annotation for each model (and alignments):
>> Peptidase_M7  Streptomyces extracellular neutral proteinase (M7) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   2.6   4.2e-36   7.5e-33       1     131 [.      33     161 ..      33     163 .. 0.94

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 4.2e-36
  Peptidase_M7   1 avtvtydasaapsfrsqiarsasiwnsavsnvrlaesssgadfayregndsrgsyastdghgrgyifldyaqnqqydstrvtahetghvlglpdtys 97 
                   a+t+ y++s+aps+ s   ++a+iwn+a sn+ l+ +   +++  ++     gsya     g+g +++d +q  qy   r+ +he gh+lglpd+y 
    KIR64434.1  33 AMTICYNTSQAPSYASIANQAATIWNNATSNLTLTANCG-TNLRIYQI-TGGGSYAVRTSLGNGRVYIDTQQAAQYSPLRIMTHEIGHILGLPDNYN 127
                   789*******************************97765.77776665.467********************************************* PP

  Peptidase_M7  98 gpcselmsgggpgpsctnaqpdaaersrveqlwa 131
                   g c+ lmsgg  g  ctn++p +ae  rv  l+a
    KIR64434.1 128 GDCALLMSGGSAGTGCTNPYPSTAEANRVTSLFA 161
                   *******************************998 PP

>> Peptidase_M57  Dual-action HEIGH metallo-peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   5.1   1.4e-07   0.00025      70     199 ..      59     171 ..      22     179 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.4e-07
  Peptidase_M57  70 alglsltfrltrgtntqasdmvvaditaktasgaggsaGfPsgGlPykviqigtglesysvdvnehvithelGhtvGlRhsDyynrsisCGsagne 165
                    +   +lt           ++++ ++  + + +g+g+ a   s G+    i+  ++ + ++      ++the+Gh +Gl   D yn    C    + 
     KIR64434.1  59 NATSNLT----------LTANCGTNLRIYQITGGGSYAVRTSLGNGRVYIDTQQAAQYSP----LRIMTHEIGHILGL--PDNYNGD--CALLMSG 136
                    3333333..........4456666777888899999999999987655555544444444....469**********9..699**99..9999999 PP

  Peptidase_M57 166 gtagvGaih.ipgtPttatsgsimnsCfsssetGe 199
                    g+ag+G  +  p t  +  ++s++   +s++e G 
     KIR64434.1 137 GSAGTGCTNpYPSTAEANRVTSLFAGTLSATERGS 171
                    ******86538999999999************996 PP

>> Peptidase_M43  Pregnancy-associated plasma protein-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   9.1e-07    0.0016      62      92 ..     102     132 ..      66     164 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 9.1e-07
  Peptidase_M43  62 dststnksstLthelGhfLgLihtfeggCer 92 
                    ++ +  +   +the+Gh LgL   ++g+C  
     KIR64434.1 102 QAAQYSPLRIMTHEIGHILGLPDNYNGDCAL 132
                    33344455689******************64 PP

>> Reprolysin_5  Metallo-peptidase family M12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.4   2.4e-06    0.0043      72     178 ..      45     153 ..       9     169 .. 0.55

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.4e-06
  Reprolysin_5  72 daselLnefqsassalrgqqnddlailflmtnfsggvGlAwlgqlcnsgsagsvstrveks.........nsvvvstatevqvvaHElGHnfGavHD 159
                   + +++ n++   ++ ++++ +     l+l+ n++++  +   +q+++ gs +  +     s         +++   + + + +++HE+GH +G +  
    KIR64434.1  45 SYASIANQA---ATIWNNATS----NLTLTANCGTN-LR--IYQITGGGSYAVRT-----SlgngrvyidTQQ-AAQYSPLRIMTHEIGHILGLPDN 125
                   333333333...444444333....36666677777.22..23333322211111.....0111112221333.33666699************965 PP

  Reprolysin_5 160 cdsss.........esqsCslsnstepa 178
                    ++++         ++++++++ st++a
    KIR64434.1 126 YNGDCallmsggsaGTGCTNPYPSTAEA 153
                   5555566667777666666666566555 PP

>> DUF4953  Met-zincin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.9e-06    0.0052      16      36 ..     111     131 ..     106     134 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.9e-06
     DUF4953  16 vvaHEvGhtLGLrhNfaASsa 36 
                 +++HE+Gh+LGL++N+ +  a
  KIR64434.1 111 IMTHEIGHILGLPDNYNGDCA 131
                 579*************98765 PP

>> Reprolysin_4  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   2.1e-05     0.038     104     157 ..      70     130 ..       4     171 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
  Reprolysin_4 104 sqqnvgvawvgalclsarqnk..kasgvaasrd...ey...difAHEiGHtfGaaHdlsdeg 157
                    + n  +  + ++++ a  +   ++ ++  + +   +y    i+ HEiGH +G+  + + ++
    KIR64434.1  70 CGTNLRIYQITGGGSYAVRTSlgNGRVYIDT-QqaaQYsplRIMTHEIGHILGLPDNYNGDC 130
                   3444555555666655555441223334333.12444544589**********987766444 PP

>> Peptidase_M6  Immune inhibitor A peptidase M6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.6e-05     0.028     226     245 ..     109     128 ..      54     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.6e-05
  Peptidase_M6 226 vGvfaheyGhDLGLPDeyDt 245
                   + +++he Gh LGLPD+y+ 
    KIR64434.1 109 LRIMTHEIGHILGLPDNYNG 128
                   56899*************86 PP

>> Astacin  Astacin (Peptidase family M12A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.1e-05     0.039      22      93 ..      48     122 ..      31     126 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHHSS-EEEE-S.SSSCEEEEE--SSCEE-SS--.SSEEEEEE-.CCC-S...HHHHHHHHHHHHTB CS
     Astacin  22 aaikkaleeyekktCirfkereaseenylkvtkaegClssvgra.ggkqevslg.kgCek...lgiivHElmHalGf 93 
                 +  ++a + +++ t  + + ++ +  + l++++ +g  s+  r+  g+ +v+++ ++ ++   l i++HE++H lG+
  KIR64434.1  48 SIANQAATIWNNATS-NLTLTA-NCGTNLRIYQITGGGSYAVRTsLGNGRVYIDtQQAAQyspLRIMTHEIGHILGL 122
                 455566666666664.333333.567789999999999999999899******965565522257***********8 PP

>> Peptidase_M10  Matrixin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.9e-05     0.069     103     124 ..     102     123 ..      94     135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.9e-05
                    .SSSEEHHHHHHHHHHHHTTBE CS
                    xxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M10 103 veqgvslflVaaHEiGHalGLe 124
                    + +++s + + +HEiGH+lGL 
     KIR64434.1 102 QAAQYSPLRIMTHEIGHILGLP 123
                    4677888999**********96 PP

>> Peptidase_M54  Peptidase family M54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011       0.2     149     168 ..     112     132 ..     100     138 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
                    HHHHHHHHTT----S-.TSTT CS
  Peptidase_M54 149 vlhelGhlyGLshCke.dCvm 168
                    ++he+Gh++GL+   + dC +
     KIR64434.1 112 MTHEIGHILGLPDNYNgDCAL 132
                    79**********999989976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 1577.76
//
Query:       KIR64435.1  [L=510]
Description: carboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.5e-150  500.5   1.5   5.1e-150  500.4   1.5    1.0  1  Carboxyl_trans  Carboxyl transferase domain
     0.0017   17.9   3.0      0.013   15.0   1.4    2.4  2  MdcE            Malonate decarboxylase gamma subunit (MdcE)


Domain annotation for each model (and alignments):
>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  500.4   1.5  5.7e-154  5.1e-150       3     493 ..      28     507 ..      26     508 .. 0.96

  Alignments for each domain:
  == domain 1  score: 500.4 bits;  conditional E-value: 5.7e-154
                     CTTCEEEEEEEEHTTSGGGEBEHHHHHHHHHHHHHHHHHT..EEEEEEEESBETTEEHHHHTTEEEEESSTTSGGGCEEECHHHHHHHHHTEEEE CS
  Carboxyl_trans   3 hprGkltareridllldpgsFgeledlffhrvtelgrkkklprdgvvtgsGaviGravevvaqdktvlggslgpakgekllkaqeeaikagepli 97 
                      ++Gkl+arer  ll+d+gsF+e         ++++++++lp+dgvvtg  a++Gr v+++a+d+tv++gs+g  ++ek++++ e+a+++g+p++
      KIR64435.1  28 AAKGKLFARERVALLVDEGSFVEDGL------YANALAEGLPADGVVTGTAAIDGRPVCLMANDSTVKAGSWGARTVEKIIRIIERAYSTGVPMV 116
                     689*****************987443......334455679****************************************************** PP

                     EEEEE-ES.SSGHHSSHHHHHHHHHHHHHHHHHHHCS-EEEEESSEEETHHHHHHHHTSEEEEETTEEEEESSTHHHHHHHHSSCC-SSCHHHHS CS
  Carboxyl_trans  98 gindsgGa.egriqegveslrgsGkifgenskasgeIpqislvtgrcaGggaYlpalgdrvimveetskifltGpdvikkvlgreevtseelgGa 191
                     +++ds+Ga  +++ + ++ +rg Gkif ++++asg Ipq++ ++g++a+ggaY+pa++d+v mv+++++++l + +++++v+g e+ t e +gGa
      KIR64435.1 117 YLVDSAGArITDQVDLFPGRRGAGKIFWNQVRASGSIPQVCALFGPSAAGGAYIPAFCDVVAMVDGNASMYLGSDRMVEMVTG-EKTTLEAMGGA 210
                     ********888999*********************************************************************.*********** PP

                     HHHHTTTTSSSEEESSHHHHHHHHHHHHTTS-SSTTSGGSS----ECSSGSSSH...HCS-CTTTS---HHHHHHCEECTTC-EEESTTSSTTEE CS
  Carboxyl_trans 192 tqhmtksGvahltaeddeealelirkllsylPkkasnnresaPivetadepdrd.lieivPdnakkpyDvreviarlvdegeFlEikegyAktvV 285
                     ++h+++sGv h++ +++ eal+ +r++lsylP    n ++++P +e++++p +  l  +vP+++++++D+r  +++l d+g+F+Ei++ +A+++ 
      KIR64435.1 211 RVHCAESGVGHFLCKTEAEALDVVRRYLSYLP---ANWTQPPPAAEATPAPAKAdLAALVPASERQAFDMRRYVKGLLDDGSFFEIQALWARELT 302
                     ********************************...56566*******9999988899************************************** PP

                     EEEEEETTEEEEEEEE--SEEETTEE-HHHHHHHHHHHHHHHHTT--EEEEE-BSEE--SHHHHHTTHHHHHHHHHHHHHT--S-EEEEE-TEEE CS
  Carboxyl_trans 286 vGfArlgGipvGvvAnetrveaGqvlfidsavKaarfirlcdaenlPlviladvrGflvGqrqeyggilkhGaklvdalaeakvPkitvilrkay 380
                     +Gf+rl+G  vGvv+n+   ++G vlf dsa+Ka+rf++lcda+n+Pl++l dv+Gf+vG++ e++gi++hGak+++a++ea+vPki v++rkay
      KIR64435.1 303 IGFGRLDGEVVGVVGNNSMFKGG-VLFVDSADKATRFVQLCDAFNVPLLFLSDVPGFMVGSAVEKQGIIRHGAKMITAISEATVPKICVVVRKAY 396
                     *****************866666.*********************************************************************** PP

                     HHHHHTTTGGGSTTTTEEETTT-EEESS-HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHTTSSS CS
  Carboxyl_trans 381 GGayvvmdskingadlvaawptariaVlgpegaveilfrkekaaaemerkdlaaerkkklkeyeeellnpyvaaargfaDavidpsetraklvia 475
                     G++ ++m ++  ++d+++a pta+iaV+g+e av++++ +++aa + e +++aa+ ++k +eye++ + +++ a+  ++Da+++p e+ra+lv++
      KIR64435.1 397 GAGLYAMAGPGFEPDATIALPTAKIAVMGAEAAVNAVYANKIAAIADE-AERAAFVAAKRAEYERD-IDVVRLASELVVDAIVEPHELRAELVRR 489
                     *****************************************9998855.678999***********.**************************** PP

                     EEEHGGGHHHHHHHHHHH CS
  Carboxyl_trans 476 lelewkkarklparkrrn 493
                      +++ +k r++  r++++
      KIR64435.1 490 YAAARTKDRHFSRRRHGV 507
                     *********999999986 PP

>> MdcE  Malonate decarboxylase gamma subunit (MdcE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.012   1.1e+02      17      81 ..      65     129 ..      48     173 .. 0.64
   2 !   15.0   1.4   1.5e-06     0.013      64     217 ..     346     503 ..     305     510 .] 0.74

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.012
                 EEEEEEEETTEEEEEEEE---TTSS-B-HHHHHHHHHHHHHHH...TSS..S--EEEEEEEE--B--SHH CS
        MdcE  17 lkvldgsltlesvrfvaVigdankgevGvdealaLaaaVleai...era..ekrpilvlvDvasQrlgrr 81 
                 + v++g +   ++r+v  +++    + G       a +V+++i   era  +  p++ lvD+a+ r++ +
  KIR64435.1  65 DGVVTGTAAI-DGRPVCLMANDSTVKAGSWG----ARTVEKIIriiERAysTGVPMVYLVDSAGARITDQ 129
                 4566666666.67777776666666655443....344444443335541145699999**999988765 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.5e-06
                 --EEEEEEEE--B--SHHHHHHTHHHHHHHHHHHHHHHHHHT--EEEEEEEEEEHHHHHHT...TTT-SEEEEEET-EEESS-HHHH.HHHHT--HHHH CS
        MdcE  64 krpilvlvDvasQrlgrrdEllGihealahlakalarArlaGhpvigllvGkavsGaflah...glqanrlialpgvqvavmdkasa.ArvTkrsveaL 158
                 + p+l l Dv++  +g   E  Gi    a ++ a+  A +   p i ++v ka   ++ a+   g++ +  ialp +++avm+  +a   v    + a+
  KIR64435.1 346 NVPLLFLSDVPGFMVGSAVEKQGIIRHGAKMITAISEATV---PKICVVVRKAYGAGLYAMagpGFEPDATIALPTAKIAVMGAEAAvNAVYANKIAAI 441
                 679*********************9988888888888875...99********988877764448******************8766156888999999 PP

                 HHHGGCSGGG--SHHHHHT...TT--SEEEE-S-SSS--HHHHHHHHHHHHHHHHGGG-SGG CS
        MdcE 159 ealaksipvfAydvdnyar...lGlleelldveeaealaeallalvaqvlaekDerrllaae 217
                  + a+  + +A    +y r   +  l + l v+ + ++ e  + lv++  a++ + r  +  
  KIR64435.1 442 ADEAERAAFVAAKRAEYERdidVVRLASELVVDAIVEPHELRAELVRRYAAARTKDRHFSRR 503
                 99999988888766666441114445555666777777777777777766665444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3691.89
//
Query:       KIR64436.1  [L=384]
Description: acyl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-50  170.7   3.1    3.6e-50  170.1   3.1    1.3  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    6.7e-39  133.0   0.1    1.3e-38  132.1   0.1    1.5  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    1.2e-21   77.4   1.7    1.8e-21   76.8   1.7    1.3  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
    2.4e-21   75.7   0.3    4.4e-21   74.9   0.3    1.5  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.1   3.1     8e-54   3.6e-50       1     149 [.     234     382 ..     234     383 .. 0.99

  Alignments for each domain:
  == domain 1  score: 170.1 bits;  conditional E-value: 8e-54
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpdraeasmaKlfas 96 
                    g+Gf+++++ l+ +R+a+aa a+gla+ +++e+++ya +r+afg+p++++q++++k+a+m+ +++ arl+ y+aa+++ ag+p + +a++aKl as
     KIR64436.1 234 GRGFAQFLRILDEGRIAIAALAVGLAQGCVDESIKYASQRQAFGQPIGNYQAIQFKIADMELKAHTARLAYYDAAARMLAGEPFKRQAAIAKLHAS 329
                    79********************************************************************************************** PP

                    HHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHHH CS
  Acyl-CoA_dh_1  97 elaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarrl 149
                     +a++ a++a q++Gg+G+++eypv+r++rd+++l+igeGtse+qr+iiar l
     KIR64436.1 330 TVAVDNAREATQIHGGYGFMNEYPVARFWRDSKILEIGEGTSEVQRMIIARDL 382
                    **************************************************975 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.1   0.1   2.9e-42   1.3e-38       1     113 []       6     118 ..       6     118 .. 0.99

  Alignments for each domain:
  == domain 1  score: 132.1 bits;  conditional E-value: 2.9e-42
                    THHHHHHHHHHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHH CS
  Acyl-CoA_dh_N   1 teeqealrdtvrefaeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailrf 96 
                    teeqealr +vr+fa+e +ap++ae++e+++fp+e++++++++Gl+g+++pee+gG+g+dy++ ++++eelar+d+++a++l +  sl+a +i+rf
     KIR64436.1   6 TEEQEALRSSVRDFAREVVAPVIAEHYEKHTFPYEVIRQMGKMGLFGLPFPEEHGGMGGDYFALCLALEELARVDSSVAITLEAAVSLGAMPIFRF 101
                    89********************************************************************************************** PP

                    S-HHHHHHHHHHHHTTS CS
  Acyl-CoA_dh_N  97 GteeqkrryLpklasge 113
                    Gt+eq++r+Lp+l+sge
     KIR64436.1 102 GTAEQQERWLPRLLSGE 118
                    ****************8 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   1.7   4.1e-25   1.8e-21       2     128 ..     250     366 ..     249     372 .. 0.96

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 4.1e-25
                    HHHHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   2 giaavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaa 97 
                     iaa a+G+A+++++e +++a +r+   +g+++   +a+q+++a+++ + ++Ar+  ++aaar      ag+++    +++a++a+++a++ a++ 
     KIR64436.1 250 AIAALAVGLAQGCVDESIKYASQRQA--FGQPIGNYQAIQFKIADMELKAHTARLAYYDAAAR----MLAGEPF----KRQAAIAKLHASTVAVDN 335
                    79************************..***********************************....999***9....99**************** PP

                    HHHHHHHCGGGGGBTT-HHHHHHHHHHHHCT CS
  Acyl-CoA_dh_2  98 vdalfeaaGgsalrkesplqRlwRDahaaaa 128
                    ++++ +++Gg++  +e+p+ R+wRD +++++
     KIR64436.1 336 AREATQIHGGYGFMNEYPVARFWRDSKILEI 366
                    *************************998765 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.3   9.9e-25   4.4e-21       1      97 []     122     222 ..     122     222 .. 0.92

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 9.9e-25
                    EEE---SS-SS-GGG---EE.EEETT.EEEEEEEEEEEETTTT..-SEEEEEEE.TS---.----EEEEEEE..GGGEEE-----BSS-TTS-EEE CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvktta.aerdggeyvlnGeKiwitnaai..atlalvlar.tekpd.rarglslflvprdapgvsvrrieeklGlrglptge 91 
                    +f+lTEp++Gsd+ + +t+a  +++++e+v+nG+K +itn+++    l++v a   ++   ++++ls+++vp+++pg++v +   k+G    +t+e
     KIR64436.1 122 GFGLTEPGTGSDAGGTQTRAvLDESTDEWVINGSKAFITNSGTdiTALVTVTAVtGTR-PdGSKELSTIIVPSGTPGFTVAPGYSKVGWTASDTHE 216
                    69******************99999****************99877788888885334.348********************************** PP

                    EEEE.. CS
  Acyl-CoA_dh_M  92 lvfedv 97 
                    l+f+d+
     KIR64436.1 217 LTFDDC 222
                    ****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2924.28
//
Query:       KIR64437.1  [L=883]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-12   45.1   9.4    9.3e-12   45.1   9.4    6.7  4  HTH_31      Helix-turn-helix domain
    6.4e-09   35.7   0.0    1.5e-08   34.5   0.0    1.6  1  HTH_3       Helix-turn-helix
    9.5e-07   29.3   1.5    9.5e-07   29.3   1.5    3.9  4  AAA_16      AAA ATPase domain
    4.4e-05   23.7   0.5    4.4e-05   23.7   0.5    4.3  4  TPR_12      Tetratricopeptide repeat
     0.0002   21.3   0.0    0.00044   20.2   0.0    1.5  1  AAA_5       AAA domain (dynein-related subfamily)
     0.0003   20.4   2.1     0.0003   20.4   2.1    2.5  2  AAA_25      AAA domain
     0.0013   18.5   0.2     0.0013   18.5   0.2    2.2  2  HTH_25      Helix-turn-helix domain
     0.0027   16.9   0.0     0.0083   15.3   0.0    1.8  2  NB-ARC      NB-ARC domain
  ------ inclusion threshold ------
      0.044   13.8   0.0      0.097   12.7   0.0    1.5  1  HTH_19      Helix-turn-helix domain
      0.049   13.3   5.7      0.068   12.9   4.6    1.8  1  TPR_21      Tetratricopeptide repeat-like domain
      0.073   12.6   0.1       0.26   10.8   0.1    2.0  1  Sigma70_r4  Sigma-70, region 4
       0.13   12.1   0.3       0.53   10.2   0.3    2.0  1  NACHT       NACHT domain
       0.17   12.3   0.0       0.36   11.3   0.0    1.5  1  AAA         ATPase family associated with various cellular ac
       0.36   10.8   6.6         21    5.2   0.3    4.6  4  TPR_10      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   9.4   7.3e-15   9.3e-12       2      63 ..      17      78 ..      16      79 .. 0.95
   2 ?    0.1   0.8       0.8     1e+03      22      59 ..     176     212 ..     164     217 .. 0.81
   3 ?   -0.0   0.4      0.91   1.2e+03      33      55 ..     302     327 ..     299     332 .. 0.64
   4 ?    1.1   3.0       0.4   5.1e+02      13      40 ..     693     720 ..     667     754 .. 0.83

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 7.3e-15
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerae 63
                L alLra R +aGL+q+e+A+r+gv + t+++lE+Gr  rp++ +++ la algl +  ra+
  KIR64437.1 17 LSALLRAHRHAAGLTQAELAARAGVGVRTVRDLERGRSARPQRTTVDLLAGALGLAGPVRAA 78
                789****************************************************9887775 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.8
      HTH_31  22 erlgvsestlsrlEqGrrgrpspavlealaralgldpa 59 
                 + +g s+  +  +  G+    + +vl a+a a+g+ +a
  KIR64437.1 176 AVAGRSPGEVAGVLVGEG-SDPADVLSAAAAAFGAARA 212
                 567889999999999999.58899**********9876 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.91
      HTH_31  33 rlEqGrrgrpspa...vlealaralg 55 
                 rl + rr  p pa   +l+alar lg
  KIR64437.1 302 RLARVRREPPDPAelpALAALARRLG 327
                 66676775455554447777777665 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.4
      HTH_31  13 aGLsqeevAerlgvsestlsrlEqGrrg 40 
                 + L ++ +Ae +++   +   +EqGrr 
  KIR64437.1 693 RVLARANLAEVTRLEGRYADAVEQGRRV 720
                 3578999*******************93 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   1.2e-11   1.5e-08       1      50 [.      21      71 ..      21      73 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1.2e-11
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTS CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgv 50
                l++ R ++gl+q+eLA+++Gv ++t++++E+G  ++P  +t+ +la aLg+
  KIR64437.1 21 LRAHRHAAGLTQAELAARAGVGVRTVRDLERGrSARPQRTTVDLLAGALGL 71
                6788889******************************************95 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   1.5   7.4e-10   9.5e-07       1     126 [.     132     252 ..     132     264 .. 0.60
   2 ?   -0.8   0.2       1.4   1.8e+03     106     130 ..     463     495 ..     387     537 .. 0.58
   3 ?   -1.8   0.5       2.7   3.5e+03     103     128 ..     639     685 ..     573     708 .. 0.54
   4 ?   -0.9   0.2       1.4   1.8e+03     106     147 ..     808     849 ..     740     866 .. 0.62

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 7.4e-10
      AAA_16   1 rlvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd....ggiflrgkcdqlesaipysalaqalareellrqlldeaesaele 95 
                 +l+GRe+++++L ++l   ++++p++v l+G +GvGK++l+ ++++a+ ++     + +l g+  +       + +++a+a+  + ++ +++++ ++++
  KIR64437.1 132 ELIGRERDVAELVELLT--ADHGPPVVSLVGLAGVGKTALALAVAHAVAGRspgeVAGVLVGEGSDP------ADVLSAAAA-AFGAARASDLAVRLAA 221
                 589*************7..77889**********************999998885355566666555......223333312.2222222222222222 PP

      AAA_16  96 awrekleealaavpelagaea.srllellkrl 126
                 + +  l +a++  ++++ a+a +rl+ ++  l
  KIR64437.1 222 RPALLLIDAVE-RAPDPVAGAlHRLAGAVPTL 252
                 22222222222.34444444445665555555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.4
      AAA_16 106 a.......avpelagaeasrllellkrll.all 130
                 +       +++  ++++++r +e+++rl+ + +
  KIR64437.1 463 RefaaeqaIGAGERSDIRRRHAEVFARLVaRTA 495
                 133222222333333333555555555553333 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.7
      AAA_16 103 eala.......................avpelagaeasrllellkrlla 128
                 ++la                        v++laga  +r l+++ rl+a
  KIR64437.1 639 AVLAlatrhgrlrdmavaqhslawhdvRVGDLAGA--RRRLAAMDRLAA 685
                 11112233444444444444444443322222232..555555555553 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.4
      AAA_16 106 a.....avpelagaeasrllellkrllallsrderplvlvlDdlqwa 147
                 +     a +++ag++++ l e+l  l+a ++        vlD l+ a
  KIR64437.1 808 EwfaaaAEGNVAGQDRRELVEALVGLAASTRD-----AAVLDRLDAA 849
                 13323344455555555555555555522222.....3466666644 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.8   2.4e+03      51      65 ..     319     333 ..     295     345 .. 0.57
   2 ?    5.9   4.0     0.012        16      10      68 ..     621     677 ..     615     679 .. 0.88
   3 !   23.7   0.5   3.4e-08   4.4e-05       8      68 ..     699     757 ..     692     758 .. 0.94
   4 ?   -2.0   1.1       3.5   4.5e+03      10      53 ..     794     835 ..     790     839 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.8
      TPR_12  51 LgrlyralgryeeAl 65 
                 L+ l r+lg +  A+
  KIR64437.1 319 LAALARRLGGLPLAI 333
                 333333333333333 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.012
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                  a+l + g +deA++   ++l++a+r  G    + a +++ L++   + g+++ A+++l
  KIR64437.1 621 CALLGATGGHDEARDQAAAVLALATRH-G-RLRDMAVAQHSLAWHDVRVGDLAGARRRL 677
                 567778999***************875.5.5569*******************999876 PP

  == domain 3  score: 23.7 bits;  conditional E-value: 3.4e-08
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                 nla+v r  gry++A e  +++ +   ++ +p h    ++l ++g ++ + gr++eA e l
  KIR64437.1 699 NLAEVTRLEGRYADAVEQGRRVAAGLVEVGDPGH--RRRALGTIGLALAQDGRPDEAAEVL 757
                 8*********************************..*********************9865 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 3.5
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgr 53 
                 a++ +++ + + A e++ +a e    + G d+ +++++l +L+ 
  KIR64437.1 794 ANIALHRADGELAAEWFAAAAEGN--VAGQDRRELVEALVGLAA 835
                 678888889999999999999988..788999999999988885 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   3.5e-07   0.00044       3      88 ..     157     245 ..     155     250 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3.5e-07
                 EEE--SSSSHHHHHHHGGGGB....S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHH CS
       AAA_5   3 lLvGppGtgKselaerlaaal....nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlsl 88 
                  LvG  G+gK+ la  +a+a+      ev  v+  ++  ++d++     + g ++ +d + vr a ++++l++D vera++ v+++L++l
  KIR64437.1 157 SLVGLAGVGKTALALAVAHAVagrsPGEVAGVLVGEGSDPADVLSAAAAAFGAARASDLA-VRLAARPALLLIDAVERAPDPVAGALHRL 245
                 59********************999999999*****************866666666665.55888899******************987 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   2.1   2.4e-07    0.0003      35     145 ..     155     254 ..     137     257 .. 0.71
   2 ?   -2.7   0.3       2.9   3.7e+03      85      94 ..     672     681 ..     615     719 .. 0.58

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.4e-07
      AAA_25  35 lallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLfakdrggtlltadvdal 133
                 ++ l+G  g+GKt+lal +a+ava  +  +g    e + Vl+  + d++d l   ++a g+a+   ++l+v  +a+     L+  d+ + + +++  al
  KIR64437.1 155 VVSLVGLAGVGKTALALAVAHAVAGRS--PG----EVAGVLVGEGSDPADVLSAAAAAFGAAR--ASDLAVRLAAR---PALLLIDAVERAPDPVAGAL 242
                 6789********************544..47....78************99999999888887..34444433322...22222233333355555555 PP

      AAA_25 134 eaaieevegvrl 145
                  + + +v+ +r+
  KIR64437.1 243 HRLAGAVPTLRV 254
                 555566655555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.9
      AAA_25  85 elrrRlravg 94 
                 + rrRl+a+ 
  KIR64437.1 672 GARRRLAAMD 681
                 2333333332 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2     1e-06    0.0013       2      37 ..      21      56 ..      20      71 .. 0.93
   2 ?   -1.8   0.3       2.3   2.9e+03       6      33 ..     690     717 ..     688     718 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1e-06
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT--TT CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEeddfda 37
                Lra R a+gl+  e+a++  + +++++ lE++++++
  KIR64437.1 21 LRAHRHAAGLTQAELAARAGVGVRTVRDLERGRSAR 56
                9*******************************9875 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.3
                 HHTTT--HHHHHHHSS--HHHHHHHHCT CS
      HTH_25   6 RearglsleevaketkIrkdylealEed 33 
                 R+ r l +  +a+ t++  +y  a E++
  KIR64437.1 690 RRLRVLARANLAEVTRLEGRYADAVEQG 717
                 77788889999******99999999987 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.5e-06    0.0083       2      63 ..     137     194 ..     136     218 .. 0.73
   2 ?   -2.6   0.0         2   2.5e+03     189     205 ..     321     337 ..     306     341 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.5e-06
                 HHHHHHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBT.EEEEEEEESXX CS
      NB-ARC   2 eksvekviekLlekdelqslvvalvGmgGvGKttlakqilnksdevegrFd.svawvvvsktd 63 
                 e +v ++ e L   +++   vv+lvG +GvGKt la  + +    v gr +  va v v++ +
  KIR64437.1 137 ERDVAELVELLTADHGPP--VVSLVGLAGVGKTALALAVAHA---VAGRSPgEVAGVLVGEGS 194
                 778889999999777777..****************999887...444433355555555555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2
                 HHHHHCTT-HHHHHHHH CS
      NB-ARC 189 eivekckGlPlalkvlg 205
                  ++++ +GlPla+ +++
  KIR64437.1 321 ALARRLGGLPLAIELMA 337
                 5667789******9986 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.6e-05     0.097       3      52 ..      20      69 ..      19      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.6e-05
      HTH_19  3 rLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaeal 52
                 L++ R  +gltq+ela r+g+  +  + +E g++  p + ++  +a al
  KIR64437.1 20 LLRAHRHAAGLTQAELAARAGVGVRTVRDLERGRSARPQRTTVDLLAGAL 69
                599********************999*****9988788777666666555 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   4.6   5.3e-05     0.068      46     135 ..     623     716 ..     609     756 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.3e-05
      TPR_21  46 lqeaveakdaa.kakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLew...vlekakdeelkalarlRLarvllaekkydeAlkt 135
                 l+ a+  +d+a + ++a+ +la ++g+    a+a+  lA + v  gdla A+ +L +   +++++ ++ l+ lar  La+v   e+ y++A+++
  KIR64437.1 623 LLGATGGHDEArDQAAAVLALATRHGRLRDMAVAQHSLAWHDVRVGDLAGARRRLAAmdrLAAQSGERRLRVLARANLAEVTRLEGRYADAVEQ 716
                 55555544444145566778999999999999********************98865222689999*************************976 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1    0.0002      0.26      18      42 ..      27      51 ..      20      52 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
                TTT--HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4 18 geglTleEIgerlgiSrerVrqiek 42
                  glT++E+++r g+   +Vr +e+
  KIR64437.1 27 AAGLTQAELAARAGVGVRTVRDLER 51
                579******************9997 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3   0.00041      0.53       2      31 ..     155     184 ..     154     261 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00041
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpq 31 
                 +v l G aG+GKT+L+  +a+a a + + +
  KIR64437.1 155 VVSLVGLAGVGKTALALAVAHAVAGRSPGE 184
                 57899*****************99887655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00028      0.36       2      22 ..     157     177 ..     156     235 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00028
                 EEESSTTSSHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel 22 
                  l+G  G+GKT+la ava+ +
  KIR64437.1 157 SLVGLAGVGKTALALAVAHAV 177
                 589***************986 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.65   8.3e+02      12      32 ..     624     644 ..     621     647 .. 0.83
   2 ?   -3.1   0.0       6.6   8.5e+03       2      23 ..     654     675 ..     654     677 .. 0.81
   3 ?    5.2   0.3     0.016        21       4      40 ..     696     732 ..     694     734 .. 0.85
   4 ?    5.0   0.0     0.018        23       4      23 ..     736     755 ..     733     759 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.65
      TPR_10  12 lrqrgrydeAealleealair 32 
                 l ++g +deA++ +  +la+ 
  KIR64437.1 624 LGATGGHDEARDQAAAVLALA 644
                 678999******999999986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.6
      TPR_10   2 AsslnNLanalrqrgrydeAea 23 
                 A +++ La    ++g++++A++
  KIR64437.1 654 AVAQHSLAWHDVRVGDLAGARR 675
                 6688999988888999999986 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.016
      TPR_10   4 slnNLanalrqrgrydeAealleealairrrllGpdH 40 
                 ++ NLa + r  gry++A++  +++ a   ++  p H
  KIR64437.1 696 ARANLAEVTRLEGRYADAVEQGRRVAAGLVEVGDPGH 732
                 568*****************99999988777766666 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.018
      TPR_10   4 slnNLanalrqrgrydeAea 23 
                 +l  ++ al q gr deA +
  KIR64437.1 736 ALGTIGLALAQDGRPDEAAE 755
                 78889*************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (883 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 5988.98
//
Query:       KIR64438.1  [L=166]
Description: MarR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-15   54.8   0.6    1.1e-14   54.0   0.6    1.4  1  MarR_2     MarR family
    1.1e-13   50.8   0.1    1.8e-13   50.2   0.1    1.3  1  MarR       MarR family
    1.1e-06   29.1   0.0    1.9e-06   28.3   0.0    1.4  1  HTH_27     Winged helix DNA-binding domain
    6.8e-05   22.4   0.0    0.00017   21.1   0.0    1.7  2  HTH_24     Winged helix-turn-helix DNA-binding
    0.00013   21.7   0.3    0.00029   20.6   0.3    1.6  1  HTH_IclR   IclR helix-turn-helix domain
      0.002   18.4   0.0     0.0075   16.6   0.0    1.8  2  Rrf2       Transcriptional regulator
     0.0053   16.4   0.2      0.011   15.3   0.2    1.5  1  GntR       Bacterial regulatory proteins, gntR family
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.016   15.1   0.0    1.2  1  TrmB       Sugar-specific transcriptional regulator TrmB
      0.012   15.6   0.1      0.023   14.6   0.1    1.6  1  HTH_Crp_2  Crp-like helix-turn-helix domain
      0.089   12.8   0.1        1.6    8.8   0.1    2.4  2  HTH_29     Winged helix-turn helix
        0.1   12.8   0.3        1.2    9.4   0.1    2.6  3  AbiEi_4    Transcriptional regulator, AbiEi antitoxin


Domain annotation for each model (and alignments):
>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.6     7e-18   1.1e-14       1      62 []      35      96 ..      35      96 .. 0.98

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 7e-18
                TT--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2  1 lgltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                +gl+p ++ vL  L+r+pg+ l++++la+ + ls s v+r+++r+++ GL+ rr++p D+R+
  KIR64438.1 35 HGLSPVEFEVLTRLARSPGNQLRMTDLAAQTSLSTSGVTRVVDRMERDGLLCRRACPSDRRS 96
                69***********************************************************6 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.1   1.1e-16   1.8e-13       1      58 [.      37      96 ..      37      97 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1.1e-16
                --HHHHHHHHHHHHSTT..EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR  1 ltltqfviLrilyeqgp..lsvseLakklgvskstvtrvldrLekkGlieRskspeDrRe 58
                l++++f++L+ l+++++  l++++La + ++s+s vtrv+dr+e++Gl+ R+ +p+DrR+
  KIR64438.1 37 LSPVEFEVLTRLARSPGnqLRMTDLAAQTSLSTSGVTRVVDRMERDGLLCRRACPSDRRS 96
                799*************9889999************************************7 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.2e-09   1.9e-06       1      68 []      37     105 ..      37     105 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.2e-09
      HTH_27   1 ltrqqalvLhlir.hrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                 l++++  vL  ++  ++++ + +dl+  + ++ s +  +++++++ GL+ r +++ drr++   +T++G
  KIR64438.1  37 LSPVEFEVLTRLArSPGNQLRMTDLAAQTSLSTSGVTRVVDRMERDGLLCRRACPSDRRSSYAVVTAAG 105
                 5778899988887699999999*********************************************99 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.6   5.9e+03      14      19 ..       7      12 ..       6      14 .. 0.84
   2 !   21.1   0.0     1e-07   0.00017      18      46 ..      56      84 ..      37      85 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.6
      HTH_24 14 knpris 19
                ++pri+
  KIR64438.1  7 DDPRIT 12
                69***9 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1e-07
      HTH_24 18 isqreLAerlglSpstvnrrlkrLeeeGl 46
                + +++LA ++ lS s v+r ++r+e++Gl
  KIR64438.1 56 LRMTDLAAQTSLSTSGVTRVVDRMERDGL 84
                7799************************8 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.3   1.8e-07   0.00029       6      48 ..      42      85 ..      42      89 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.8e-07
                HHHHCT-CTTBSS.-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR  6 laiLdalaeapqe.ltlselArrtglpkStvhRlLqtLvelGyv 48
                +++L  la+ p+  l+ ++lA++t l+ S v R +  +++ G++
  KIR64438.1 42 FEVLTRLARSPGNqLRMTDLAAQTSLSTSGVTRVVDRMERDGLL 85
                679999*****9977***************************98 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.6e-06    0.0075      11      55 ..      42      85 ..      38      89 .. 0.94
   2 ?   -0.9   0.0       1.4   2.2e+03       6      51 ..      95     142 ..      92     144 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.6e-06
                HHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        Rrf2 11 lhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglv 55
                + +l+ La+ ++++ ++++++a+++++s s + +++ ++++ gl+
  KIR64438.1 42 FEVLTRLARSPGNQ-LRMTDLAAQTSLSTSGVTRVVDRMERDGLL 85
                579**********9.****************************97 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHSSTCC-B-HHHHHHHH..TS-HHHHHHHHHHHHH CS
        Rrf2   6 kteyalhallyLakeeeeepvsseeiaerq..nispsylekilakLrk 51 
                 +++ya+ + + L++ ++  p  ++ i e +  +++p+ l+ +l+ Lr+
  KIR64438.1  95 RSSYAVVTAAGLQRLDQTLPGHLRIIEEWFigQLQPEELRSLLHGLRR 142
                 667777777777777666666666666633336777777888887776 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2     7e-06     0.011      19      57 ..      51      88 ..      43      89 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7e-06
                -TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        GntR 19 rpGdkLPsereLaaefgVsrttvReALrrLeaeglverr 57
                +pG +L +  +Laa+   s++ v ++ +r e++gl+ rr
  KIR64438.1 51 SPGNQL-RMTDLAAQTSLSTSGVTRVVDRMERDGLLCRR 88
                79****.*****************************887 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0     1e-05     0.016       3      55 ..      34      88 ..      32     103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1e-05
                HCHHHHHCCCHCHHHH..HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEE CS
        TrmB  3 klGLseyEakvYlaLl..klgpatadeiaeelgvprskvYevLrsLedkGlVere 55
                ++GLs  E++v + L      +++++++a ++ ++ s v +v+ ++e+ Gl  r+
  KIR64438.1 34 EHGLSPVEFEVLTRLArsPGNQLRMTDLAAQTSLSTSGVTRVVDRMERDGLLCRR 88
                79**************533457899*************************97665 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   1.4e-05     0.023       8      53 ..      46      87 ..      42     109 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
                HHHHCTTTCEEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE CS
   HTH_Crp_2  8 lrlaeraggeielpltqeelAsmlGltretvsrilseLkreglisr 53
                 rla+ + g    +l +++lA+   l+ + v+r+  +++r+gl+ r
  KIR64438.1 46 TRLARSP-G---NQLRMTDLAAQTSLSTSGVTRVVDRMERDGLLCR 87
                5555543.3...467889*************************975 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.16   2.6e+02      31      53 ..      27      55 ..      25      60 .. 0.79
   2 ?    8.8   0.1     0.001       1.6      17      41 ..      60      84 ..      53      97 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.16
      HTH_29 31 rwlkrfeegGlaa.....lld.rrrsgrp 53
                r+   fee+Gl+      l +  r++g+ 
  KIR64438.1 27 RFAAQFEEHGLSPvefevLTRlARSPGNQ 55
                77889*****9988888888888888875 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.001
      HTH_29 17 qiAkllglsrrtvyrwlkrfeegGl 41
                ++A+++ ls + v r+++r+e +Gl
  KIR64438.1 60 DLAAQTSLSTSGVTRVVDRMERDGL 84
                7899********************5 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.2   1.9e+03      19      36 ..      18      36 ..      14      37 .. 0.74
   2 ?    3.2   0.0     0.061        99      17      35 ..      30      51 ..      29      51 .. 0.87
   3 ?    9.4   0.1   0.00073       1.2       2      38 ..      44      85 ..      43      89 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.2
     AbiEi_4 19 lea.aGispsalrrLvrkG 36
                +ea aG+s++  + + ++G
  KIR64438.1 18 VEAhAGLSARFAAQFEEHG 36
                5788999988666666655 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.061
     AbiEi_4 17 releaaGispsa...lrrLvrk 35
                +++e++G+sp     l+rL r+
  KIR64438.1 30 AQFEEHGLSPVEfevLTRLARS 51
                7999******888999999985 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00073
     AbiEi_4  2 rlpelasrqvGlfttrelea.aGispsa....lrrLvrkGwL 38
                 l +la++ +  +++++l+a   +s+s     ++r+ r G+L
  KIR64438.1 44 VLTRLARSPGNQLRMTDLAAqTSLSTSGvtrvVDRMERDGLL 85
                5788999999********999999997788889999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1165.69
//
Query:       KIR64439.1  [L=193]
Description: polyisoprenoid-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-45  155.5   0.1    1.7e-45  155.2   0.1    1.0  1  YceI      YceI-like domain


Domain annotation for each model (and alignments):
>> YceI  YceI-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2   0.1   9.2e-50   1.7e-45       1     144 [.      23     187 ..      23     188 .. 0.94

  Alignments for each domain:
  == domain 1  score: 155.2 bits;  conditional E-value: 9.2e-50
                 EEE-CCC-EEEE........-EEEEECTECCEEEE..TTT..EEEEEEEEGGGEESS.HCHHHHHHCTCTT-TTT--EEEECCCCEE........EEEE CS
        YceI   1 YtldpahssvtftvkhlgvskvtGrfkkvsgelsvdeddp.essvevtidvasidtgnakrdehlksadffdvakyPtatFvstsve......akvtGd 92 
                 Y ld ah++v+f ++h++vskv+G+f+++++++++ ++dp +ssv++ti++asi+t +a+rd+hl+s++f+d++ +Pt++++st+v+      +++tG+
  KIR64439.1  23 YLLDVAHKRVGFVARHMMVSKVRGEFADATATITI-AEDPmQSSVSATIQAASISTAQADRDAHLRSPEFLDAEAFPTLEYRSTGVKsrdgneFVLTGE 120
                 779*******************************9.57888****************************************************99**** PP

                 EEETTEEEEEEEEEEEEEEE........CCEECEEEEEGGGGTC.........TTTC-SEEEEEEEE CS
        YceI  93 LtikGvtkpvtlpvtvngaa........agfsatgtidrtdFGlkr.......galvgdeveleiel 144
                 LtikGvt+pv+l+v+++g +        +gfsa+++idr+dFGl++       g+lvg+++++eie 
  KIR64439.1 121 LTIKGVTRPVELEVEFEGVGrspfgqdiFGFSASTEIDREDFGLTWnvaletgGVLVGKKIKIEIEG 187
                 ****************9743456777778899********************99**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1467.43
//
Query:       KIR64440.1  [L=492]
Description: glutamate--cysteine ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-06   26.0   0.0    0.00084   18.8   0.0    2.4  2  GCS2      Glutamate-cysteine ligase family 2(GCS2)


Domain annotation for each model (and alignments):
>> GCS2  Glutamate-cysteine ligase family 2(GCS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0   0.00073        13       2     103 ..      46     144 ..      45     162 .. 0.75
   2 !   18.8   0.0   4.7e-08   0.00084     123     183 ..     187     244 ..     169     320 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.00073
                 EEEEEEEEEETTTTEE-S-HHHHHCCCTTT-S.SSEEEE-SSTTEEEEE--SB....SSHHHHHHHHHHHHHHHHHHHHHTT-EEE--SB-SS------ CS
        GCS2   2 gvEeeflvvdlatgdlrgwseiledeaiiglseggsvvkelpegqvElstapl....eslaeaaeeisadleelrsvadelGlellglGthPfalrsed 96 
                 g+E e+ ++d+a++          ++ i+++  ++ +++el + ++El   p     ++ a  +++++  l+++ + a+    +++++G  P  l +++
  KIR64440.1  46 GLEIELNLMDPAAEPAM------RNDEILADIADPLFQTELGRFNLELNAEPRliegAGFADYERDLRSSLDRADARAASSDARIVLVGILP-TLTERH 137
                 67778888887776666......44444444447799**************97666678999999999999999999999999*******99.666665 PP

                 ------- CS
        GCS2  97 evtpkar 103
                  v+++  
  KIR64440.1 138 LVADNLS 144
                 5555543 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 4.7e-08
                 B-EEEEEEE-SSHHHHH.HHHHHHHTTHHHHHHHH--B-EETTEE-S-SB-GGGCCTTSTT CS
        GCS2 123 vaglhvqvnidssseedVevlrlvrallPvllAlsAnSPfleGrdtgyaStRariftqtpq 183
                 + +l  ++ ++   +  +  ++ + a + v +A+ AnSP+l Gr   +a tR ++f+q  +
  KIR64440.1 187 CTSLQFHLQVAP--DSFADYWNASQAIAGVQVAVGANSPYLYGR-QLWAETRIALFQQATD 244
                 445555555555..555679************************.9***********9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3884.51
//
Query:       KIR64441.1  [L=234]
Description: hypothetical protein TK50_01805 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-16   57.7   0.0      9e-08   31.9   0.0    2.5  2  PASTA     PASTA domain


Domain annotation for each model (and alignments):
>> PASTA  PASTA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0     5e-12     9e-08       2      62 ..     101     158 ..     100     159 .. 0.92
   2 !   23.5   0.0     2e-09   3.6e-05       1      60 [.     164     218 ..     164     221 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 5e-12
                 E--TTTTSBHHHHHHHHHH..TT--CCCEEEECTCCGTTB.EEEECS-TTSEECTTS-EEEEEE CS
       PASTA   2 tvPdvtGmsvdeAkatLka..lGlkiktveetsddvpeGt.VisQsPeaGtevskgskvtltvs 62 
                 tvP v+G ++++A+++L++  lG++       +   ++G+ V +++P+ G+ vs+g++v l+v+
  KIR64441.1 101 TVPPVVGTDFEDARDELRDlrLGWR------LVFGAESGRdVRRTDPPVGSPVSRGTTVALYVA 158
                 8******************666775......8999999************************96 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 2e-09
                 EE--TTTTSBHHHHHHHHHHTT--CCCEEEECTCCGTTBEEEECS-TTSEECTTS-EEEE CS
       PASTA   1 vtvPdvtGmsvdeAkatLkalGlkiktveetsddvpeGtVisQsPeaGtevskgskvtlt 60 
                 v vPd++G + d+A + L + Gl     ++   +  +G V++Q P+a+++   ++kv lt
  KIR64441.1 164 VSVPDLVGDDCDDAAEDLVEEGL-----YPGYPTGRTGVVTAQAPAADSTAHWNDKVALT 218
                 67*********************.....66778889999************999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1848.93
//
Query:       KIR64442.1  [L=223]
Description: hypothetical protein TK50_01810 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-11   42.1   0.0    1.2e-10   41.1   0.0    1.5  1  PASTA        PASTA domain
  ------ inclusion threshold ------
        1.7    8.8   3.2        8.5    6.5   0.0    2.1  2  Cyt_c_ox_IV  Cytochrome c oxidase subunit IV


Domain annotation for each model (and alignments):
>> PASTA  PASTA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   1.3e-14   1.2e-10       1      61 [.     143     202 ..     143     204 .. 0.91

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1.3e-14
                 EE--TTTTSBHHHHHHHHHHTT--CCCEEEECTCCGTTBEEEECS-TTSEECTTS-EEEEE CS
       PASTA   1 vtvPdvtGmsvdeAkatLkalGlkiktveetsddvpeGtVisQsPeaGtevskgskvtltv 61 
                 v +P ++G+++++A+++L   G+  ++++   +d p+GtV++++PeaG+ v++g++v+l+v
  KIR64442.1 143 VPMPPLVGLPLATAERILDRIGVDHRVET-RESDRPTGTVLETDPEAGALVPAGDQVILVV 202
                 569********************555555.88***************************99 PP

>> Cyt_c_ox_IV  Cytochrome c oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.9     0.021   1.8e+02      85     110 ..      69      94 ..      64      99 .. 0.69
   2 ?    6.5   0.0   0.00094       8.5      54      94 ..     165     205 ..     162     215 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.021
  Cyt_c_ox_IV  85 wwPlvlalaaalaalglal.gwWllli 110
                  w P++l++ +al+ lgl   g+Wl+l 
   KIR64442.1  69 WTPILLGV-VALLLLGLLGvGFWLALS 94 
                  44777665.677788876449999865 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00094
  Cyt_c_ox_IV  54 varridarpedredaeiadgaGelGffsPhSwwPlvlalaa 94 
                  v +r+++r  dr ++ + + ++e G   P   + +++ +aa
   KIR64442.1 165 VDHRVETRESDRPTGTVLETDPEAGALVPAGDQVILVVAAA 205
                  5689***********************99987765544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1545.22
//
Query:       KIR64443.1  [L=96]
Description: hypothetical protein TK50_01820 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.037   12.9   0.0      0.039   12.8   0.0    1.0  1  SWIRM-assoc_2  SWIRM-associated domain at the N-terminal


Domain annotation for each model (and alignments):
>> SWIRM-assoc_2  SWIRM-associated domain at the N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.1e-06     0.039     239     293 ..      30      85 ..      10      94 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.1e-06
  SWIRM-assoc_2 239 lldldeyneWmnEedYevdeegkkkvhkkrlsvedlvssse.edkkkkksakskkr 293
                    +ld  +y+ Wm  e Ye+++ g ++++++ +       +     + +++++ +++r
     KIR64443.1  30 VLDWPTYDGWMWLEGYELNAAGDAVSRRSIYVQAAGLRQLRaAAQPRQRTVPVRQR 85 
                    89********************9999887665554444333133333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 792.70
//
Query:       KIR64444.1  [L=293]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-15   56.2   1.0    3.1e-15   56.2   1.0    2.4  2  HTH_31       Helix-turn-helix domain
      3e-07   30.4   0.1      1e-06   28.7   0.0    1.9  2  HTH_19       Helix-turn-helix domain
    1.1e-06   28.6   0.1    7.5e-06   25.9   0.0    2.3  2  HTH_3        Helix-turn-helix
      7e-05   22.6   0.6    0.00031   20.5   0.2    2.3  2  HTH_25       Helix-turn-helix domain
  ------ inclusion threshold ------
      0.024   14.3   0.0      0.044   13.5   0.0    1.4  1  Sigma54_DBD  Sigma-54, DNA binding domain
      0.039   13.9   0.4       0.12   12.3   0.1    1.9  2  HTH_37       Helix-turn-helix domain
       0.16   12.2   0.0       0.41   10.9   0.0    1.7  1  DUF2316      Uncharacterized protein conserved in bacteria (D


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   1.0   1.2e-18   3.1e-15       1      64 []      13      75 ..      13      75 .. 0.97
   2 ?   -1.3   0.3       1.2     3e+03      13      27 ..     136     150 ..     110     162 .. 0.81

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 1.2e-18
      HTH_31  1 aLGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerael 64
                +LGa+Lr+ R +a+++ e+vAerl +s+s++sr+E+G  +  +p++++ ++ ++g+++ae +el
  KIR64444.1 13 RLGAELRRHRDAARITIEAVAERLECSASKISRIETGHTT-ATPRDVRDMLLIYGVSGAESDEL 75
                69*************************************6.*******************9987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.2
      HTH_31  13 aGLsqeevAerlgvs 27 
                    + e+v +r++v 
  KIR64444.1 136 PDFTAEQVQQRVRVR 150
                 467888888888874 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0     4e-10     1e-06       3      55 ..      17      68 ..      15      78 .. 0.93
   2 ?   -2.7   0.0       2.4   6.1e+03      13      26 ..     138     153 ..     138     157 .. 0.73

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 4e-10
      HTH_19  3 rLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgid 55
                 L++ R  + +t+e++aerl  s skis iE+g + +++++++++ + ++g++
  KIR64444.1 17 ELRRHRDAARITIEAVAERLECSASKISRIETGHT-TATPRDVRDMLLIYGVS 68
                59*******************************99.***************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.4
      HTH_19  13 ltqeelaerlgis..r 26 
                 +t e++++r++++  r
  KIR64444.1 138 FTAEQVQQRVRVRlgR 153
                 5889999999887544 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   2.9e-09   7.5e-06       1      53 [.      18      70 ..      18      72 .. 0.95
   2 ?   -0.6   0.0      0.56   1.4e+03      38      54 ..     188     204 ..     187     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 2.9e-09
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsld 53
                l++ R+++ +++e +Ae+l  s s isriE G++  +++ +  ++  +gvs +
  KIR64444.1 18 LRRHRDAARITIEAVAERLECSASKISRIETGHTTATPRDVRDMLLIYGVSGA 70
                7899**********************************************976 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.56
                 HHHHHHHHHHHTSEHHH CS
       HTH_3  38 letlkklakaLgvslde 54 
                 l++l+++a+  +v+l+ 
  KIR64444.1 188 LKRLVEVAELPNVTLQI 204
                 578999*******9986 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   1.2e-07   0.00031       2      41 ..      18      57 ..      17      66 .. 0.91
   2 ?   -1.3   0.0       0.8     2e+03      11      23 ..     138     150 ..     124     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.2e-07
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT--TTSS-H CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEeddfdalpep 41
                Lr+ R a+++++e+va+++  +++ + ++E +   a p +
  KIR64444.1 18 LRRHRDAARITIEAVAERLECSASKISRIETGHTTATPRD 57
                9*******************************99998876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.8
                 --HHHHHHHSS-- CS
      HTH_25  11 lsleevaketkIr 23 
                  + e+v+++ ++r
  KIR64444.1 138 FTAEQVQQRVRVR 150
                 6889999999987 PP

>> Sigma54_DBD  Sigma-54, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.7e-05     0.044      50      91 ..      27      68 ..      17      84 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
                 XXHHHHHTTSSSXHHHHHHHHHHXEEEXSSXEEECSCCXXXC CS
  Sigma54_DBD 50 ltlrevaealelhesTvSRvvsnkyiktprGvfelkafFsss 91
                 +t++ vae le + s +SR+ ++++ +tpr v  +  ++  s
   KIR64444.1 27 ITIEAVAERLECSASKISRIETGHTTATPRDVRDMLLIYGVS 68
                 7899**************************999887777654 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   4.8e-05      0.12      16      56 ..      11      51 ..       2      54 .. 0.90
   2 ?   -3.1   0.0       3.1   7.8e+03      38      52 ..     128     142 ..     123     151 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.8e-05
                HHHHHHHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT-- CS
      HTH_37 16 KaqlalaiaeliekrelsqseaaqllgiaqPkvsrllrgkl 56
                +++l +++++ +++ +++ + +a++l+ + +k+sr++ g+ 
  KIR64444.1 11 RRRLGAELRRHRDAARITIEAVAERLECSASKISRIETGHT 51
                889999******************************99875 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.1
                 HHHHT--HHHHHHHH CS
      HTH_37  38 aqllgiaqPkvsrll 52 
                  ++   a+P++++ +
  KIR64444.1 128 SAMIRAARPDFTAEQ 142
                 566667777777665 PP

>> DUF2316  Uncharacterized protein conserved in bacteria (DUF2316)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00016      0.41      10      43 ..      13      46 ..       8      65 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
     DUF2316 10 aTkkeLqanfelsgltveevaedLnlttekvekv 43
                +  +eL+ +  ++ +t+e+vae L+++ +k+ ++
  KIR64444.1 13 RLGAELRRHRDAARITIEAVAERLECSASKISRI 46
                55689*************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2111.67
//
Query:       KIR64445.1  [L=73]
Description: regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-22   77.9   0.6    5.3e-22   77.6   0.6    1.1  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.6     3e-26   5.3e-22       1      54 []      13      66 ..      13      66 .. 0.96

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 3e-26
      DUF397  1 atWrKSsySgggggnCVEvaalpdavavRDSkdpdgpvLtftpaewaaFlagvk 54
                atW+KSs Sg++ +nCVEva +++av+vRDSkd +gp L+f pa w+aF+ag++
  KIR64445.1 13 ATWFKSSKSGPNCDNCVEVAYVTGAVGVRDSKDKSGPNLVFAPAGWHAFVAGAR 66
                69*****************9999999*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 616.96
//
Query:       KIR64446.1  [L=138]
Description: hypothetical protein TK50_01835 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       128  (0.00713927); expected 358.6 (0.02)
Passed bias filter:                      110  (0.00613531); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1132.92
//
Query:       KIR64447.1  [L=200]
Description: hypothetical protein TK50_01840 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1455.23
//
Query:       KIR64448.1  [L=266]
Description: signal peptide protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-39  132.9   0.0    8.3e-39  132.5   0.0    1.2  1  DUF3662       Protein of unknown function (DUF2662)
    1.6e-20   73.2   0.0    2.8e-20   72.4   0.0    1.3  1  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d
    9.2e-20   70.8   0.1    1.5e-19   70.1   0.1    1.3  1  FHA           FHA domain


Domain annotation for each model (and alignments):
>> DUF3662  Protein of unknown function (DUF2662)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5   0.0   1.4e-42   8.3e-39       1     114 [.      13     126 ..      13     127 .. 0.99

  Alignments for each domain:
  == domain 1  score: 132.5 bits;  conditional E-value: 1.4e-42
     DUF3662   1 LqrfErrlerlvegafarvfrgevqpvEiakaLrremddnarvvsrgrvlaPneYtveLspeDyerlasleeelaeeladllaehareqgytlvgpvtV 99 
                 LqrfE+rle+lvegafa+vf+g v+pvEi +a++re++ +++ +++gr+l+Pn+Y++ Lsp D++rla+++++la+ela+  ae++ eq +t++g+v V
  KIR64448.1  13 LQRFEKRLEGLVEGAFAKVFKGVVHPVEILNAMQREAEAHKAILAGGRTLVPNRYVIDLSPYDHNRLAPYAAALAQELAQSQAEFIGEQAWTVYGDVIV 111
                 89************************************************************************************************* PP

     DUF3662 100 eleedeslktGqfrv 114
                 e+e+ e l+tG frv
  KIR64448.1 112 EIERGEGLDTGMFRV 126
                 **************9 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   4.7e-24   2.8e-20       8      89 ..     182     263 ..     178     266 .] 0.96

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 4.7e-24
                   TT-EEEETTEEEEEES-TT-SEE---TTS-TT-EEEEEETTEEEEEE-CESS--EETTEE-SECC--TTSEEEETTEEEEEE CS
  Yop-YscD_cpl   8 kGaeveLeegevviGsdedcDivLsDkevsrkhlkLeveeesvrledlgsrngllvngerveelelrpgdvlelGttelalv 89 
                    G++++L+ g  viG+++++++ L D ++sr+h++L+++  +v+l+dlgs+ng++vng+rv+   l+pgd ++lGtt l+++
    KIR64448.1 182 DGRTYPLQMGSTVIGRGDQANLRLPDVGISRRHARLDFDGGQVVLTDLGSTNGTMVNGQRVSAVALNPGDMIQLGTTTLTFR 263
                   5999**********************************************************999**************986 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.1   2.5e-23   1.5e-19       2      69 .]     194     256 ..     193     256 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 2.5e-23
                 EEESSTTSSEETTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA   2 tiGRssdcdivlddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69 
                 +iGR ++++++l+d  iSr+Ha+++fd+g  +v l+DlgS+nGt+vNgqr++    v L+ gd i+lG
  KIR64448.1 194 VIGRGDQANLRLPDVGISRRHARLDFDGG--QVVLTDLGSTNGTMVNGQRVSA---VALNPGDMIQLG 256
                 7****************************..*********************9...***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 1681.32
//
Query:       KIR64449.1  [L=162]
Description: signal peptide protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-15   55.9   0.0      5e-15   55.6   0.0    1.2  1  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d
    3.2e-14   53.0   0.0    4.8e-14   52.5   0.0    1.3  1  FHA           FHA domain


Domain annotation for each model (and alignments):
>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   5.6e-19     5e-15       2      89 ..      73     161 ..      72     162 .] 0.95

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 5.6e-19
                   EECCCCTT-EEEETTEEEEEES-TT-SEE---TTS-TT-EEEEEETTEEEEEE-CESS--EETTEE-SECC.--TTSEEEETTEEEEEE CS
  Yop-YscD_cpl   2 vlsGpdkGaeveLeegevviGsdedcDivLsDkevsrkhlkLeveeesvrledlgsrngllvngerveele.lrpgdvlelGttelalv 89 
                   v  G+ +G +++L e +++iG++ed+ +v++D+  s++h++L  ++ ++ +edlgs+ng++++  +v+  + +  g  + +G t l l+
    KIR64449.1  73 VTAGQLAGTRITLGEAQITIGRAEDSTLVITDDYASARHARLVPRDGQWFVEDLGSTNGTYLDRAKVTGPTpVPLGVPIRIGRTSLELR 161
                   568999**************************************************************6667************99986 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   5.3e-18   4.8e-14       1      68 [.      90     153 ..      90     154 .. 0.89

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 5.3e-18
                 EEEESSTTSSEETTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEE CS
         FHA   1 vtiGRssdcdivlddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdviel 68 
                 +tiGR++d+++v+ d   S +Ha+++ ++g  ++++eDlgS+nGt++++ +++   p+++  g  i++
  KIR64449.1  90 ITIGRAEDSTLVITDDYASARHARLVPRDG--QWFVEDLGSTNGTYLDRAKVTG--PTPVPLGVPIRI 153
                 69****************************..*******************998..666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1106.99
//
Query:       KIR64450.1  [L=474]
Description: protein phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-13   50.2   0.4    4.5e-13   49.3   0.4    1.4  1  PP2C_2    Protein phosphatase 2C
    1.9e-12   47.4   0.0    2.5e-08   33.9   0.0    2.1  2  PP2C      Protein phosphatase 2C
  ------ inclusion threshold ------
      0.048   13.7   0.0       0.12   12.4   0.0    1.6  1  BofC_C    BofC C-terminal domain


Domain annotation for each model (and alignments):
>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.4   7.5e-17   4.5e-13      12     194 ..      20     208 ..       8     221 .. 0.76

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 7.5e-17
      PP2C_2  12 cqDalavwtdsggsllaVaDGaGSakrSerGariaveavvealaelleseeeeeeallraleaailadvlkeeaeaqda.elkdyatTllaavvtpdei 109
                 +qD    ++ +g +llaVaDG+G  + ++++++i+  a++   +++        +al++al++a+ +++++ +     + +l+ ++tTl a++++++++
  KIR64450.1  20 NQD----SVYAGPRLLAVADGMGGMAAGDVASNIVIGAMAPLDEDVP------GDALVDALRSAVGTANQQLRDTVDANpQLEGMGTTLTATLFSGTKL 108
                 344....445788899****************999999887666655......33444444444443332334444444699***************** PP

      PP2C_2 110 valqiGDGaivvrdrdgevqllgepds.............geyanq......ttfltsedaeeelrirrlkledgdalllmTDGlanslrdeerfaell 189
                  +++iGD+ + +  r+ge+ +++++d+              e+++       t++l+ +d+ +e  +r +   +gd+ l+++DGl+ ++++ e  a+ +
  KIR64450.1 109 GMVHIGDSRA-YLLRNGEFAQITKDDTyvqmlvdegrisaEEASSHpqrsllTRALDGRDIDPEYSVRQVL--PGDRYLICSDGLS-GVVSAETIADTM 203
                 **********.679**********99899888888777765555547789999999999999999999888..8***********7.777777777777 PP

      PP2C_2 190 eellr 194
                 +e+++
  KIR64450.1 204 REYTD 208
                 76654 PP

>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   4.1e-12   2.5e-08      29     140 ..      23     133 ..       8     148 .. 0.88
   2 !   11.4   0.0   3.1e-05      0.19     193     258 .]     169     229 ..     166     229 .. 0.92

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 4.1e-12
                 CCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTHHHHHHHHHHHHHHHHHHHHHHHHHC.HCCT-EEEEEEEEEETTEEEEEEESS-EEEE CS
        PP2C  29 sgkssvsffavfdghggseaakyarehleeilksqksfeelekleqalrksfladtdeelksskant.epsksGstavvalirgtklyvAnvGDSravL 126
                 s +   +++av dg+gg  a ++a++ + + ++  +++ +++ l +alr+++   + ++l+++ +++ + +  G+t + +l++gtkl + + GDSra L
  KIR64450.1  23 SVYAGPRLLAVADGMGGMAAGDVASNIVIGAMAPLDEDVPGDALVDALRSAVGT-ANQQLRDTVDANpQLEGMGTTLTATLFSGTKLGMVHIGDSRAYL 120
                 555667899********************99999999999999*******9999.7777777666666899**************************** PP

                 EETTEEEEECS--- CS
        PP2C 127 crkgnakkeltedH 140
                  r+g+ + ++t+d 
  KIR64450.1 121 LRNGEFA-QITKDD 133
                 ******9.*99995 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.1e-05
                 --EEEEEEE-TTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCHHCHC CS
        PP2C 193 ePdvtsvklteedefliLacdGlwdvlsdqeavdlvrdelekkkspeevaeelvdeaiargsedni 258
                 +P+ ++++  + d +li  +dGl  v+s ++++d  r+  +    p+++ e+lv+ a++ g  dni
  KIR64450.1 169 DPEYSVRQVLPGDRYLI-CSDGLSGVVSAETIADTMREYTD----PQQCVERLVQLALRGGGPDNI 229
                 69999999999999997.8****************999999....9************99888876 PP

>> BofC_C  BofC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     2e-05      0.12       8      62 ..     325     384 ..     322     394 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2e-05
                 GT---EEEETTTEEEEBSSS-S.....TT-BS-------TTTS-HHHHHHHHH--S---H CS
      BofC_C   8 KengYfGldedgtlslfeGepe.....eekviksffqidveklesslkeqLkkGIrvesk 62 
                 +++ Y+G +edg++++f G ++     +    +s+     ++l  + +eq k+GI+ ++ 
  KIR64450.1 325 QRQYYVGATEDGRVAVFRGVQGqiaglDLSAEHSVSPARLDDLTLAAQEQVKQGIPARDE 384
                 6789****************9933322223345555666667777777999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3351.26
//
Query:       KIR64451.1  [L=497]
Description: cell cycle protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-70  238.5  14.2    1.5e-70  238.0  14.2    1.2  1  FTSW_RODA_SPOVE  Cell cycle protein
  ------ inclusion threshold ------
       0.11   12.5   0.3       0.49   10.4   0.3    2.1  1  Phage_holin_2_1  Bacteriophage P21 holin S
       0.44   10.8   3.4       0.34   11.2   0.1    2.4  3  DUF3522          Protein of unknown function (DUF3522)


Domain annotation for each model (and alignments):
>> FTSW_RODA_SPOVE  Cell cycle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.0  14.2   2.6e-74   1.5e-70       3     357 ..      89     465 ..      87     467 .. 0.90

  Alignments for each domain:
  == domain 1  score: 238.0 bits;  conditional E-value: 2.6e-74
  FTSW_RODA_SPOVE   3 llllvllllvilGlvmiysaslveslvlfgdsfvlfi....rqlvylllglivfvlllriplkfleklakllliislllLvlvkvp.....lgs 87 
                      ll +v+ll+  +G+ ++ +++l++++ +  +s  +f+    rq++++l +++++  ll + +++++ ++++ +  +l  +vlv +p       s
       KIR64451.1  89 LLPAVALLNG-IGVGFLRRLDLARAAPADRESLAIFAgnggRQFAWTLASVMLAAGLLAL-MRDHRSVSRYAYTLGLAGIVLVMIPavlpaKYS 180
                      6677888888.9999999999999999998886555435559******************.************************996533235 PP

  FTSW_RODA_SPOVE  88 sanGAkrWirlggi.siqPsEfvkialilflAavlskk...........kkevksrlrellillvivllilvlillqpdlgtavllliillvvl 169
                      ++ GAk Wi ++g+ +iqP Ef+k+al+ f+A +l++k                +r r+l + l++++l+++++++++dlgt++l + +++v l
       KIR64451.1 181 EIYGAKLWIIVPGVgQIQPGEFAKLALLAFFAYYLVRKrevlslashrfLGIDFPRGRDLGPVLAVWALSVLVLVFEKDLGTSLLYFGMFVVTL 274
                      789********98769**********************9999999877666777899999********************************** PP

  FTSW_RODA_SPOVE 170 flsglsl.klilaivlalilviaivll...illedy...qvkrvtslldpfkdplgsgYqviqsliAigsGGllGkGlgnsqqkleyLPeahtD 256
                      ++++ ++ +l++ ++l + + + ++++   ++  ++    + r   +ldpf+dp+++gYq++q l A+gsGGl+G G g ++     +Pe ++D
       KIR64451.1 275 YIATERVsWLLIGLIL-FFGGAYLAYVlggVVGGPFanfHL-RAQIWLDPFADPYQDGYQLVQGLLALGSGGLFGAGPGGGEP--LEIPEVQND 364
                      ******9777777777.788877777778855555543144.9999*************************************..779****** PP

  FTSW_RODA_SPOVE 257 fIfavigEelGlvGvllllllffllivrglriarkakdrfgsllavgivllivvqsfinigmvlGllPvtGltlPflSyGGsSllalliligil 350
                      fIfa igEe Gl+G+ +ll+ ++l++ rglr a + +d+fg+lla g+++++ +q+f+ +g+++ l+P+tG t+PflS+GGsSl+a+  li++l
       KIR64451.1 365 FIFAGIGEEIGLFGLSALLVVYLLIVERGLRAALAVRDSFGKLLAGGLAFTLGLQVFVIVGGISKLIPLTGQTTPFLSAGGSSLMANWLLIAVL 458
                      ********************************************************************************************** PP

  FTSW_RODA_SPOVE 351 lnisree 357
                      l++s  +
       KIR64451.1 459 LRVSDAA 465
                      ***9765 PP

>> Phage_holin_2_1  Bacteriophage P21 holin S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   8.1e-05      0.49       6      45 ..      41      74 ..      37      79 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.1e-05
  Phage_holin_2_1  6 gvsYgaSggsigywlkqlldklspeeWsaigvlgglvigl 45
                     +++Yga    +      +ld+++p+ W   +vl+g++++l
       KIR64451.1 41 VAAYGATVEAT------VLDTVTPDFWVPTAVLAGVFLAL 74
                     66777766666......9*******************987 PP

>> DUF3522  Protein of unknown function (DUF3522)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.64   3.8e+03      38     156 ..      37      65 ..      20      87 .. 0.43
   2 ?   -1.8   0.1      0.54   3.2e+03      74     103 ..     140     169 ..     128     180 .. 0.63
   3 ?   11.2   0.1   5.7e-05      0.34      57     121 ..     225     292 ..     203     303 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.64
     DUF3522  38 tmlfStlYHacdspgtfclekydvlqlsdfilsilavwvtlvyladldeklksllhylglllvailqekdrwslantiipilvgllillvswliecvkk 136
                 ++++ + Y a+ +                                                                                      
  KIR64451.1  37 ALVIVAAYGATVE-------------------------------------------------------------------------------------- 49 
                 3333333322221...................................................................................... PP

     DUF3522 137 rklypsllrrrlkrlnlqql 156
                  + + +   + ++ ++   +
  KIR64451.1  50 -ATVLD---TVTPDFWVPTA 65 
                 .11111...33333333333 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.54
     DUF3522  74 vwvtlvyladldeklksllhylglllvail 103
                 + + l++l++ ++++ ++  +lgl+ ++++
  KIR64451.1 140 LAAGLLALMRDHRSVSRYAYTLGLAGIVLV 169
                 334456666666666666666666666554 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 5.7e-05
     DUF3522  57 ekydvlqls....dfilsilavwvtlvyladldeklksllhylglllvailqekdrwslantiipilvg 121
                  ++++l ++      ++ +lavw+++v +  +++ l ++l y+g+++v + ++++r  ++ +i+ il+ 
  KIR64451.1 225 ASHRFLGIDfprgRDLGPVLAVWALSVLVLVFEKDLGTSLLYFGMFVVTLYIATERV-SWLLIGLILFF 292
                 4444444446666678889*************************************9.67777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3534.63
//
Query:       KIR64452.1  [L=501]
Description: peptidoglycan glycosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-58  196.4   0.0    7.8e-58  196.1   0.0    1.1  1  Transpeptidase  Penicillin binding protein transpeptidase dom


Domain annotation for each model (and alignments):
>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.1   0.0   4.4e-62   7.8e-58       1     306 []     160     492 ..     160     492 .. 0.87

  Alignments for each domain:
  == domain 1  score: 196.1 bits;  conditional E-value: 4.4e-62
                     EEEEEEETTT-BEEEEEEESE-TTTHHCC................TCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTS CS
  Transpeptidase   1 gaavvldaktgevlamaskpsydpnakvg................kneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqgg 79 
                     gaa++ d++tg+v a++s ps+dpn  ++                +  pl+nra++++ +PGStfK+v+aaaale+g i +++++   + +  + 
      KIR64452.1 160 GAAIAFDPRTGAVQALVSMPSFDPNPLAShdtdeataaynklesaEGGPLKNRALSEVLPPGSTFKIVVAAAALENG-IGKNTQISAGPSYTPPT 253
                     799*****************************************9999*****************************.66688888888765543 PP

                     S...ECTCCCC-SSSSEEEHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--B--SSH....HH........HHHHHHTT CS
  Transpeptidase  80 qs..ikdweqdnkgsegitlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaGvptrkw....le........gatisfgi 160
                     +   i++   + + + +++l +a+++S+nt+f+kl  +lgad++++ +++fg+++++    +    G+p  ++    ++        +a+++++i
      KIR64452.1 254 SGtpIRNAVPSICPESEVSLISAVTESCNTGFAKLGVELGADRVKEKARQFGFEQDDLTVGQLGEGGLPVAASrtgaMQgpdgstdpAALAQSSI 348
                     323577777666777788*************************************55444444455556665554552266666677999999** PP

                     T...SBB-HHHHHHHHHHHHTTTEEE--BSEEEEEECTT..EEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCGTCTTS--EEEEEEEE CS
  Transpeptidase 161 G...ltvtplqlaqayaaiangGklvkPhlvkaivdpdg..vrkvkpkelnklpisketaekvkeglkgvvsrgsgtataavegykvagKTGTAe 250
                     G   +++tplq a ++ a+angG  ++P+lv ++ +pd   + ++ ++ + ++p+s + a+++++++ +vv++g+g++++   gy+v gKTGTA+
      KIR64452.1 349 GqrdVKMTPLQGALIAGAVANGGSQMRPYLVRQLLAPDRttSYYTAKPRELRQPVSGQVASDLRDMMVSVVENGTGRNAK-FNGYTVGGKTGTAQ 442
                     ***************************************988888999999***********************888888.************** PP

                     ECSSSTTSEEEEEEEEEEEEEEST..TS-SEEEEEEECTCSSSSSCCHHHHHHHHHHH CS
  Transpeptidase 251 vagkkgngkkegakiswfvgyapa..dnpkyavavlieqpkeaaggkaaapiakkile 306
                        +  +       ++wf+g+a +    p+ av v++e+++ ++g++ aa+ia ki++
      KIR64452.1 443 SGPQTPD-------HGWFIGFALDskGTPVSAVCVVLEEAG-SGGSAEAARIAGKIMQ 492
                     *963333.......58******886578999999******9.999999999*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3857.78
//
Query:       KIR64453.1  [L=490]
Description: serine/threonine protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-42  145.6   0.0    2.1e-42  145.3   0.0    1.1  1  Pkinase          Protein kinase domain
    1.6e-30  106.3   0.0    2.2e-30  105.8   0.0    1.1  1  Pkinase_Tyr      Protein tyrosine kinase
    1.2e-06   28.6   1.7    0.00078   19.4   0.2    2.5  2  APH              Phosphotransferase enzyme family
     0.0072   15.7   0.0      0.016   14.5   0.0    1.5  1  Kinase-like      Kinase-like
     0.0098   15.3   0.0      0.015   14.7   0.0    1.1  1  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.059   13.7   0.0         11    6.4   0.0    2.7  2  DUF3040          Protein of unknown function (DUF3040)
        0.1   12.2   0.0       0.15   11.7   0.0    1.1  1  RIO1             RIO1 family
       0.15   10.8   0.0       0.21   10.3   0.0    1.1  1  Pkinase_fungal   Fungal protein kinase
       0.19   10.9   0.0       0.29   10.3   0.0    1.2  1  Fructosamin_kin  Fructosamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   0.0   1.1e-45   2.1e-42       1     257 [.      12     259 ..      12     264 .. 0.91

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 1.1e-45
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 y+ +e++ +G++G V +++++  g++vAvK +     ++ +  ++++ E + +++++hp +v +y++ ++++  +lv+eyveg+ l + l r g l+++
  KIR64453.1  12 YRLDERIASGGMGDVWRGTDQVLGRTVAVKSLLPALLDDPDFaERFRGEARTMATINHPGVVDVYDFGHDQQIAFLVMEYVEGDALSSTLGRVGRLTPA 110
                 66789999***********************988776665555******************************************************** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEE..SSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS- CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlake..lessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkp 195
                 ++  +++q + +l+  H+kgi+HrD+Kp N+L+  +g l +tDFG+a+   + + + + s+ gt  Y++PE  ++   ++++Dv++lGv+ y+ l+g+ 
  KIR64453.1 111 RTMALLAQAADALHAAHCKGIVHRDVKPGNLLVRPNGTLVLTDFGIARSelVAQLTAAGSVLGTASYISPEQATGAVATPASDVYALGVVAYQCLAGRR 209
                 **********************************************9852244555599**************************************** PP

                 STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHH CS
     Pkinase 196 pfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaee 257
                 pf+g++  e + k++++               p + +i++ ++ ++++ ++kdp  R+  + 
  KIR64453.1 210 PFEGDNPLEIAMKHVRD------------TPRPLPADIPPPVRAIVERAMAKDPAARWPSAA 259
                 ***77777755555555............5789999********************986554 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.0   1.1e-33   2.2e-30       3     249 ..      14     254 ..      12     262 .. 0.93

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 1.1e-33
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  l++++++G  G+V++gt +        +VavK+l     ++    e++  ea++m +++hp +v ++ +  +++  ++v+eyv+g  L++ L +    
   KIR64453.1  14 LDERIASGGMGDVWRGTDQ----VLGRTVAVKSLLPALLDDPdfAERFRGEARTMATINHPGVVDVYDFGHDQQIAFLVMEYVEGDALSSTLGRV--G 105
                  7899************999....8899******96654443335899999********************************************8..9 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllw 196
                  +lt  +++ + +q A++++  + k +vHrd+   N L++ n +  ++DfG+ar+     + +++++      +++pE  +  + t +sDv++ Gv+ +
   KIR64453.1 106 RLTPARTMALLAQAADALHAAHCKGIVHRDVKPGNLLVRPNGTLVLTDFGIARSE-LVAQLTAAGSVLGTASYISPEQATGAVATPASDVYALGVVAY 202
                  *****************************************************98.77888999999******************************* PP

                  HHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 197 EiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeR 249
                    +  g++p++g ++ e++ k  +++  + p+++p+ +  ++++ +++dp+ R
   KIR64453.1 203 QCLA-GRRPFEGDNPLEIAMKHVRDTPRPLPADIPPPVRAIVERAMAKDPAAR 254
                  *999.********9999999988889999*********************999 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.3   4.7e-05     0.093      17     106 ..      30     127 ..      16     128 .. 0.70
   2 !   19.4   0.2   3.9e-07   0.00078     149     197 ..     112     158 ..     107     164 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.7e-05
                 EETT.-.-EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS......HHHHHHHHHHHHHHHHHHCC CS
         APH  17 ttpa.g.ryvlrrnppa..raaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr......klsaaqlpellealgeflaa 104
                 t+   g +++++   pa  + + +++r+  + r +a  +   v  v++    ++++ + f+++eyv+g  l+       +l++a + +ll++++++l a
  KIR64453.1  30 TDQVlGrTVAVKSLLPAllDDPDFAERFRGEARTMATINHpGVVDVYD---FGHDQQIAFLVMEYVEGDALSStlgrvgRLTPARTMALLAQAADALHA 125
                 444464466677777777755555666666665555433312346666...578888899****************99999999999999999999988 PP

                 HH CS
         APH 105 lh 106
                  h
  KIR64453.1 126 AH 127
                 76 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 3.9e-07
                 HHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 149 eeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 + ++la+ a+ l+++  ++++H+D +pgNllv+p+++ v  + Df+ a+
  KIR64453.1 112 TMALLAQAADALHAAHCKGIVHRDVKPGNLLVRPNGTLV--LTDFGIAR 158
                 45578888888888899******************9999..99999776 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   8.2e-06     0.016     160     266 ..     126     224 ..      98     247 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.2e-06
  Kinase-like 160 Lqakglvhgkftvdnllldekgglmlggft....aLvragtkvvlseve.kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltl 252
                   + kg+vh ++++ nll  ++g l+l++f+    +Lv + t +  s    +++  pE             +  t + d+++lG+v+y   +   P++ 
   KIR64453.1 126 AHCKGIVHRDVKPGNLLVRPNGTLVLTDFGiarsELVAQLTAAG-SVLGtASYISPEQA---------TGAVATPASDVYALGVVAYQCLAGRRPFEG 213
                  4679*************************711112333333332.22223444444433.........346678999999999999999999999999 PP

  Kinase-like 253 ateeakeewkfklc 266
                  + ++ +     k++
   KIR64453.1 214 DNPLEIAM---KHV 224
                  99875543...455 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.4e-06     0.015      90     170 ..      83     158 ..      71     166 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.4e-06
         Kdo  90 yrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkar 170
                 + A+l++e +eg   L   l +  +l  +++ all + + + +  h  g+ H+d+ + n+l++ ++    +++l D+  ar
  KIR64453.1  83 QIAFLVMEYVEG-DALSSTLGRVGRLTPARTMALLAQAADALHAAHCKGIVHRDVKPGNLLVRPNG----TLVLTDFGIAR 158
                 679*******99.579999999888****************************************9....99999986555 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0055        11      21      35 ..      49      63 ..      46      76 .. 0.78
   2 ?    4.1   0.0     0.029        58      36      64 ..     402     429 ..     387     439 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0055
     DUF3040 21 eDPklaaalrggaar 35
                +DP++a+++rg+a++
  KIR64453.1 49 DDPDFAERFRGEART 63
                8********999877 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.029
     DUF3040  36 arrrslrrlavlavllfvaGllllvlGva 64 
                 a+ ++ r  + + + ++va l+ll  Gv+
  KIR64453.1 402 APPQRSRS-GAVWLFILVATLVLLCSGVI 429
                 33343444.55555577889****99965 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.4e-05      0.15      82     150 ..      86     155 ..      62     159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.4e-05
                 EEEEE--EETTEEGGBHHHCG.-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1  82 vlvmefigedgvaapklkdve.e.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvs 150
                  lvme+++ d +   +l  v     + +  l+++  ++++++  + g+vH D+   N+lv  +  +v+ D++
  KIR64453.1  86 FLVMEYVEGDAL-SSTLGRVGrLtPARTMALLAQAADALHAAH-CKGIVHRDVKPGNLLVRPNgTLVLTDFG 155
                 69******4444.455666663347777888888888777776.99***************99889999985 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00011      0.21     307     382 ..     111     179 ..     105     193 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
  Pkinase_fungal 307 ellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFma 382
                     + ++ l++a  ++   +  +gi+HrD+  +N+l+      ++ + +L D+ +a ++    +  +a+   GT+ +++
      KIR64453.1 111 RTMALLAQAADALHAAH-CKGIVHRDVKPGNLLVR-----PNGTLVLTDFGIARSELV-AQLTAAGSVLGTASYIS 179
                     56777788888888888.89**************9.....778889999999888775.44445678888888876 PP

>> Fructosamin_kin  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00014      0.29      49      97 ..      50      95 ..      37     124 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
  Fructosamin_kin 49 ekealemFeaEaesLealaetqtirvPkvlavGelkdasfLvleyLelk 97
                     + +++e F++Ea  + ++   ++  v +v+ +G+ ++ +fLv+ey+e +
       KIR64453.1 50 DPDFAERFRGEARTMATI---NHPGVVDVYDFGHDQQIAFLVMEYVEGD 95
                     5678899*****999888...55667789*****************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 3170.77
//
Query:       KIR64454.1  [L=608]
Description: serine/threonine protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-48  164.3   0.0    4.8e-48  163.8   0.0    1.1  1  Pkinase         Protein kinase domain
    1.1e-33  114.8  15.8    6.9e-12   45.0   1.0    3.4  3  PASTA           PASTA domain
      2e-32  112.5   0.0    2.7e-32  112.1   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    1.1e-07   32.1   0.2    0.00024   21.1   0.1    2.5  2  APH             Phosphotransferase enzyme family
    0.00075   18.4   0.0     0.0012   17.7   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
        0.2   10.6   0.0       0.29   10.0   0.0    1.1  1  Haspin_kinase   Haspin like kinase domain
       0.31   11.0   2.7        3.5    7.6   0.0    3.5  3  RNase_II_C_S1   RNase II-type exonuclease C-terminal S1 domai
       0.64   10.1   5.1        8.4    6.5   2.5    2.7  2  PepSY_2         Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.8   0.0   2.2e-51   4.8e-48       1     253 [.      12     265 ..      12     274 .. 0.90

  Alignments for each domain:
  == domain 1  score: 163.8 bits;  conditional E-value: 2.2e-51
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHHHHS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfee.....kdelylvleyveggeladllerkg 93 
                 y++ e lG G++++V ++++ + g+ vA+K+++ + a++ +   +++rE +  ++l+hp iv +y++ ee     ++  ++v+e+v+g +l+++l  +g
  KIR64454.1  12 YQVGELLGYGGMAEVHRGRDLRLGRDVAIKMLRADLARDATFqMRFRREAQNAASLNHPAIVAVYDTGEEtgptgETLPFIVMEFVNGRTLKEVLGVEG 110
                 78899******************************999877669**************************9998777778******************* PP

                 S--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS....BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHH CS
     Pkinase  94 slseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk....ltsfvgtseYlAPEvlkeneyskkvDvWslGvily 188
                  l++++a +i++ ++++le+ H++giiHrD+Kp N+++ ++g++K++DFG+a+ l s+ +    ++ ++gt +Yl+PE  +++ +++ +Dv++ G++l+
  KIR64454.1 111 RLQPRRALEICADMCAALEFSHRHGIIHRDIKPGNVMLTQTGQVKVMDFGIARALASGATtmtqTSAVIGTAQYLSPEQARGEAVDARSDVYAGGCVLF 209
                 *********************************************************99999989999******************************* PP

                 HHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCST CS
     Pkinase 189 elltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRl 253
                 ell+g+ppf g++  + +++++++              ++ + ++++ +  ++ k l+k+p +R+
  KIR64454.1 210 ELLCGHPPFVGDSPVSVAYQHVRE---------APPTPSDINPDVNPAVDAIVLKALSKNPLNRY 265
                 **********77777766666666.........22334444555577777888888888887776 PP

>> PASTA  PASTA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.1   2.1e-12   4.6e-09       2      61 ..     365     425 ..     364     427 .. 0.93
   2 !   41.2   3.5   4.8e-14   1.1e-10       6      62 ..     438     493 ..     432     494 .. 0.89
   3 !   45.0   1.0   3.1e-15   6.9e-12       2      61 ..     499     559 ..     498     560 .. 0.96

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 2.1e-12
                 E--TTTTSBHHHHHHHHHHTT-.-CCCEEEECTCCGTTBEEEECS-TTSEECTTS-EEEEE CS
       PASTA   2 tvPdvtGmsvdeAkatLkalGl.kiktveetsddvpeGtVisQsPeaGtevskgskvtltv 61 
                  vPd+tG++ + A+a+L+++Gl +  +++  +++  ++tV++Q P++ t+++kg  vt+ +
  KIR64454.1 365 AVPDLTGQTQAAAVAQLEQAGLvPAVGDPIANSTCKKDTVAAQQPPPTTQLEKGRGVTIQI 425
                 7*********************88888888***********************99999876 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 4.8e-14
                 TTTSBHHHHHHHHHHTT--CCCEEEECTCCGTTBEEEECS-TTSEECTTS-EEEEEE CS
       PASTA   6 vtGmsvdeAkatLkalGlkiktveetsddvpeGtVisQsPeaGtevskgskvtltvs 62 
                 ++G  +d ++++L+al+l +  +e +s+++peG V+ +sP++Gt+v ++skvt+ vs
  KIR64454.1 438 LVGSQFDNVEQQLEALKLEVVKKE-VSSSSPEGIVTNVSPKSGTKVAEDSKVTVEVS 493
                 899***************666666.9******************************9 PP

  == domain 3  score: 45.0 bits;  conditional E-value: 3.1e-15
                 E--TTTTSBHHHHHHHHHHTT--CCCEEE.ECTCCGTTBEEEECS-TTSEECTTS-EEEEE CS
       PASTA   2 tvPdvtGmsvdeAkatLkalGlkiktvee.tsddvpeGtVisQsPeaGtevskgskvtltv 61 
                 +vP+v+G s d+Ak++L+++G  +k+v   ++    +G+V +Q+P  Gte+++g+ vt+ v
  KIR64454.1 499 QVPNVVGSSADDAKRELEQAGYVVKIVDGdEVPADQAGKVSGQNPRGGTELERGKRVTIEV 559
                 69************************99999999999*********************988 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.0   1.2e-35   2.7e-32       3     249 ..      14     264 ..      12     269 .. 0.85

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 1.2e-35
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEESSSS.....EEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelleeakimkklkhpnivkllgvctkeep.....llivteyvkgGdLlkfLr 93 
                  +g+ lG G  ++V++g+      +   +Va+K+l+++  ++   + ++ +ea+   +l+hp iv+++    +++p      +iv+e+v+g +L++ L 
   KIR64454.1  14 VGELLGYGGMAEVHRGRDL----RLGRDVAIKMLRADLARDAtfQMRFRREAQNAASLNHPAIVAVYDTGEETGPtgetlPFIVMEFVNGRTLKEVLG 107
                  6789************988....7899*******98877666568999*******************999977776777789**************** PP

                  HTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE.EETTSSTSGGGGS-HHHHHHSEEEHHHHHHH CS
  Pkinase_Tyr  94 kkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey.vkkeeaklpvkWmapEslkekkftsksDvWs 190
                   +   +l+ ++ l++++++++++e+ +++ ++Hrd+   Nv+l+++ +vk+ DfG+ar++ +  ++ ++++      ++++pE  + + +  +sDv++
   KIR64454.1 108 VE--GRLQPRRALEICADMCAALEFSHRHGIIHRDIKPGNVMLTQTGQVKVMDFGIARALASGATTmTQTSAVIGTAQYLSPEQARGEAVDARSDVYA 203
                  98..9*******************************************************777777255555557899******************** PP

                  HHHHHHHHHTTSSGTTTTSHHHH.HHHHHHTTEE..S-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 191 fGvllwEiftlgespypglknee.vleklkegkr..lekpekcpeelyelmkkcweedpeeR 249
                   G +l+E+++ g+ p+ g ++ + ++++++e      + + ++++++  ++ k ++++p +R
   KIR64454.1 204 GGCVLFELLC-GHPPFVGDSPVSvAYQHVREAPPtpSDINPDVNPAVDAIVLKALSKNPLNR 264
                  *********9.****99985555156667665541133455667777777777777777776 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   7.4e-05      0.17      33     103 ..      47     129 ..      32     134 .. 0.66
   2 !   21.1   0.1   1.1e-07   0.00024     152     197 ..     117     163 ..     111     165 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.4e-05
                 -HHHHH...HHHHHHHHHHHTT-B--B-CTTB.S-EEETTE....EEEEEE----EE-SS......HHHHHHHHHHHHHHHHHHC CS
         APH  33 aaeeir...revallrlLakagvpvPevlagd.tddeeigl....lfalieyvpgrsllr......klsaaqlpellealgefla 103
                 +a+++    r+ ++ ++ a ++   P+++a   t++e  ++    +f ++e+v gr+l +      +l+++ + e+++++ ++l 
  KIR64454.1  47 LARDATfqmRFRREAQNAASLNH--PAIVAVYdTGEETGPTgetlPFIVMEFVNGRTLKEvlgvegRLQPRRALEICADMCAALE 129
                 45555500145555555554444..55555331555555558888******************8888888888888888887775 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.1e-07
                 HHHHHHHH--S...SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 152 vlaalaallpg...elptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 +l+ +a+  ++   + +++++H+D++pgN++++++++    v Df+ a+
  KIR64454.1 117 ALEICADMCAAlefSHRHGIIHRDIKPGNVMLTQTGQV--KVMDFGIAR 163
                 3444444444444479*****************55444..5****9875 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.4e-07    0.0012     304     385 ..     113     189 ..     104     201 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.4e-07
  Pkinase_fungal 304 spkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses.garertGTleFmaiev 385
                     +p+++le ++D  ++++  +   gi+HrDi  +N+++t     ++ +  + D+ +a  l+   ++  +    +GT+++++ e 
      KIR64454.1 113 QPRRALEICADMCAALEFSH-RHGIIHRDIKPGNVMLT-----QTGQVKVMDFGIARALASGATTMtQTSAVIGTAQYLSPEQ 189
                     5788999999*999999999.9****************.....4555566777777777654433324477889988887665 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00013      0.29     228     259 ..     136     167 ..      92     177 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00013
  Haspin_kinase 228 FEHRdLhldniLvdknlnvtlidlklsRless 259
                      HRd++ +n+++ ++++v ++d+ ++R+ +s
     KIR64454.1 136 IIHRDIKPGNVMLTQTGQVKVMDFGIARALAS 167
                    55**************************9743 PP

>> RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0016       3.5      26      51 ..      24      49 ..      23      57 .. 0.90
   2 ?   -2.5   0.1       2.3   5.2e+03       5      26 ..     469     490 ..     468     497 .. 0.51
   3 ?    0.9   0.1      0.19   4.4e+02      29      44 ..     544     559 ..     537     564 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0016
  RNase_II_C_S1 26 ArveggaglplGervrVrLveADvat 51
                   A v+ g++l+lG +v ++  +AD+a+
     KIR64454.1 24 AEVHRGRDLRLGRDVAIKMLRADLAR 49
                   7887789*****************97 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.3
  RNase_II_C_S1   5 AvVvdvddrggtVqladPaVeA 26 
                    ++V+ v++++gt + +d  V+ 
     KIR64454.1 469 GIVTNVSPKSGTKVAEDSKVTV 490
                    5666666655554434444433 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.19
  RNase_II_C_S1  29 eggaglplGervrVrL 44 
                    +gg++l+ G+rv++++
     KIR64454.1 544 RGGTELERGKRVTIEV 559
                    6899*********976 PP

>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.5    0.0038       8.4       4      43 ..     344     385 ..     336     389 .. 0.77
   2 ?    2.9   0.0      0.05   1.1e+02      30      50 ..     506     526 ..     496     539 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0038
     PepSY_2   4 lalalallaaaAlA..grrdtdspkadwlpreklvakleaqG 43 
                 +++++al +a A+   g ++  +p    ++++++va+le++G
  KIR64454.1 344 VLAIIALVTAYAMSrgGAEKIAVPDLTGQTQAAAVAQLEQAG 385
                 33444444455555999***********************99 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.05
     PepSY_2  30 lpreklvakleaqGykvkkie 50 
                  +++++++ le++Gy vk ++
  KIR64454.1 506 SSADDAKRELEQAGYVVKIVD 526
                 67899**********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4346.10
//
Query:       KIR64455.1  [L=216]
Description: para-aminobenzoate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-53  179.4   0.0    7.4e-53  179.1   0.0    1.1  1  GATase         Glutamine amidotransferase class-I
    1.1e-08   35.1   0.1    3.3e-08   33.6   0.1    1.7  1  Peptidase_C26  Peptidase C26


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.1   0.0   8.3e-57   7.4e-53       1     187 [.       4     186 ..       4     189 .. 0.97

  Alignments for each domain:
  == domain 1  score: 179.1 bits;  conditional E-value: 8.3e-57
                 EEEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECE CS
      GATase   1 lliDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.vegkieaikearenkiPiLGICLGmQllaiefgrkvvkekek 98 
                 l+iDnyds++ nlv++l +lgv++ev+++d+ + e+   + ++ g+l+s+Gpgsp  ++ ++++i+++++ ++Pi+G+CLG+Q+++++fg++v ++  +
  KIR64455.1   4 LVIDNYDSFVFNLVQYLGQLGVDCEVRRNDEIDVEEVG-RVGAAGVLLSPGPGSPDrAGICLDVIRRYAG-ELPIFGVCLGHQAIGEAFGATVARAP-E 99 
                 58*****************************9999974.89*****************************.**************************.9 PP

                 EEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHH CS
      GATase  99 ehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnfl 187
                   hg+t+++ +++ ++l gl+++++++++H+++v p e++p++levt+++ ++  +m++++++ p+ gvQFHPEs++t++g+ +l+n l
  KIR64455.1 100 LLHGKTSEVSHHGVGVLAGLPDPFTATRYHSLAVLP-ETLPEELEVTGWTGSG-VVMAMRHRTLPIEGVQFHPESVLTEGGHLMLANWL 186
                 ***********************************9.*************888.9******************************9976 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1   3.6e-12   3.3e-08     102     216 .]      70     171 ..      51     171 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 3.6e-12
  Peptidase_C26 102 lergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqai..kelaeelrveAvaeDgv 195
                    ++ ++Pi+g+C+G+q +  a+G t++++ e    l  h       ++ +v+ +  ++la l     +  + +H+ a+  ++l eel+v+ ++  gv
     KIR64455.1  70 YAGELPIFGVCLGHQAIGEAFGATVARAPE----LL-H------GKTSEVSHHGVGVLAGLPD--PFTATRYHSLAVlpETLPEELEVTGWTGSGV 152
                    45679************9999988877665....33.3......2344566667789999998..899999******5556*************** PP

  Peptidase_C26 196 iEaieseeakafvlgvQwHPE 216
                    + a+++++   ++ gvQ+HPE
     KIR64455.1 153 VMAMRHRT--LPIEGVQFHPE 171
                    *****999..57********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1602.01
//
Query:       KIR64456.1  [L=92]
Description: hypothetical protein TK50_01900 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.28s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 642.85
//
Query:       KIR64457.1  [L=571]
Description: sortase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-34  116.3   0.0      1e-33  115.8   0.0    1.2  1  Sortase   Sortase domain


Domain annotation for each model (and alignments):
>> Sortase  Sortase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.8   0.0   5.7e-38     1e-33       1     124 [.     429     555 ..     429     556 .. 0.96

  Alignments for each domain:
  == domain 1  score: 115.8 bits;  conditional E-value: 5.7e-38
                 EEECCGTEEEEEEESCSSCHCTTSEEECSTT-BTTSSSEEEEEEEBSSTTSTTGGGGGGHTT-EEEEEESSSEEEEEEEEEEEEEETTHGGGGSH.... CS
     Sortase   1 lsipalginlpvlegtdeedlkagagfldesakpgeagnfvlaGHrvgkgavFsdLkklekgdaivvetkkgksyvYrvfsveivtpdevsvldp.... 95 
                 l+ip+l+ n++v+eg++++d ++ +g++ +sa+pg+ gnf +aGHr  + a F +L++l++gdaivve  k+++yvY+v++ +iv+p++v+v++p    
  KIR64457.1 429 LYIPKLDKNWVVVEGVTQQDIRYAPGHYPDSAMPGQVGNFSVAGHR--NRATFWRLDELNPGDAIVVEG-KTEWYVYQVYKSRIVKPNQVEVVAPvpmq 524
                 79********************************************..9********************.**********************9998887 PP

                 ...HTTSEEEEEEEESSSSSSTSEEEEEEEEE CS
     Sortase  96 ...tpgdaiLtLiTCtpfdsenneRlivhAkl 124
                    +p++++LtL+TC+p++  n +RlivhA+l
  KIR64457.1 525 pdaKPTKKVLTLTTCNPKFD-NYQRLIVHAEL 555
                 787777************98.*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3964.66
//
Query:       KIR64458.1  [L=268]
Description: hypothetical protein TK50_01910 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-38  130.1   0.1    8.6e-38  129.5   0.1    1.3  1  DUF881      Bacterial protein of unknown function (DUF881)
  ------ inclusion threshold ------
      0.024   14.5   0.3      0.035   14.0   0.3    1.2  1  DASH_Spc19  Spc19


Domain annotation for each model (and alignments):
>> DUF881  Bacterial protein of unknown function (DUF881)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   0.1   9.6e-42   8.6e-38       3     144 ..     115     264 ..     113     265 .. 0.91

  Alignments for each domain:
  == domain 1  score: 129.5 bits;  conditional E-value: 9.6e-42
      DUF881   3 eelkllaGltpveGpGvtitlddakkaeeeaeee........vhdedLldvvneLraaGAeaIsingqRivatsaircagnailvdgrrispPyeikaI 93 
                 ++ ++ aG+t+++G Gvt++l+da ++++++  +        vh++d+++vvn+L+a+GAea+si+++R+ atsa+rc+gn++l++gr +spP++i aI
  KIR64458.1 115 AASRQDAGFTALTGTGVTVELNDAVRRADQELPDgatnddlvVHQQDVQAVVNALWAGGAEAMSIMNVRVLATSAVRCVGNTLLLHGRVYSPPFKIVAI 213
                 567899******************988666555599*************************************************************** PP

      DUF881  94 GdpekLesalniseavggllellke.glsvtvekseevtipayrgplelkya 144
                 Gdp++L++al++se+v+ +   +++ +l ++  + ++vt+pa++++++l+ a
  KIR64458.1 214 GDPAALRQALAASEGVQMFKGAVNDfQLGYRE-TVSTVTVPAFEDSTALRSA 264
                 *************9999999999865566664.455********99998876 PP

>> DASH_Spc19  Spc19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.3   3.9e-06     0.035      56     115 ..      59     118 ..      53     144 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.9e-06
                 HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH......HHHHT-XXXX CS
  DASH_Spc19  56 slaeeiePqieellekaekeleklerreetLkaklelqegrlsnaesskkeeeeseeske 115
                 +l+e+ +Pq+++l+e  + +++  err  +L+a++e     l +++   +e+ +++ +++
  KIR64458.1  59 ALREDRRPQLTQLIEDRRVQVAASERRAAQLRAEVEEETATLADSDGPIREQRDRAAASR 118
                 789999*************************************96555555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 1862.47
//
Query:       KIR64459.1  [L=87]
Description: septation inhibitor protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-29  101.7   0.9    1.9e-29  101.6   0.9    1.0  1  CrgA      Cell division protein CrgA
     0.0029   17.8   0.4     0.0037   17.5   0.4    1.1  1  DUF3040   Protein of unknown function (DUF3040)
  ------ inclusion threshold ------
      0.016   14.9   0.4      0.016   14.9   0.4    1.7  2  FixP_N    N-terminal domain of cytochrome oxidase-cbb3, FixP
      0.027   14.8   2.9      0.034   14.5   2.9    1.1  1  DUF308    Short repeat of unknown function (DUF308)
      0.068   12.8   0.2       0.07   12.8   0.2    1.1  1  DUF3341   Protein of unknown function (DUF3341)


Domain annotation for each model (and alignments):
>> CrgA  Cell division protein CrgA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.9   5.3e-33   1.9e-29       1      88 []       1      87 []       1      87 [] 0.99

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 5.3e-33
        CrgA  1 mpkskvrkkaeytpkaaertpvkakaakpsprwyvpvmlglmllGllwlvvyYlageeipfmaelgawNlliGfgliivGllmttrWr 88
                mpks+vrkk++ytp+++ r++++a+++kpsp w+ ++ ++l+++G+ wlvvyYl+++e+p ++++g wNl++Gfg+++++l++  rWr
  KIR64459.1  1 MPKSQVRKKKVYTPPTDVRPTATAATRKPSPVWLPVTAVALIVAGIGWLVVYYLSEQEYP-VMSWGYWNLAVGFGAMVASLVLLSRWR 87
                9***********************************************************.889***********************9 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.4     1e-06    0.0037      33      83 ..      22      81 ..      15      82 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1e-06
     DUF3040 33 aar.arrrslrrlavlavllfvaGllllvlG.vaaaa........vvlgvvGfvvmlagvv 83
                a+  +r+ s+ +l v av+l+vaG+  lv+  ++  +         +  +vGf++m+a +v
  KIR64459.1 22 ATAaTRKPSPVWLPVTAVALIVAGIGWLVVYyLSE-QeypvmswgYWNLAVGFGAMVASLV 81
                4444677788899******************5555.55*******9***********9986 PP

>> FixP_N  N-terminal domain of cytochrome oxidase-cbb3, FixP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.4   4.5e-06     0.016      17      41 ..      28      52 ..      26      57 .. 0.92
   2 ?   -1.7   0.2      0.72   2.6e+03      34      38 ..      63      67 ..      59      81 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.5e-06
      FixP_N 17 nplPrWWlylFyativfavvYlilY 41
                +p P W  ++ +a+iv+++++l++Y
  KIR64459.1 28 KPSPVWLPVTAVALIVAGIGWLVVY 52
                799*********************9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.72
      FixP_N 34 avvYl 38
                + +Y+
  KIR64459.1 63 SWGYW 67
                34444 PP

>> DUF308  Short repeat of unknown function (DUF308)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   2.9   9.6e-06     0.034      27      72 ..      36      83 ..      31      84 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.6e-06
      DUF308 27 lfGilllvsGivqiiaafaarkknrggrw..lglllGilyliaGllll 72
                + ++ l+v+Gi+ ++ ++ ++++     w  + l++G   ++a l+ll
  KIR64459.1 36 VTAVALIVAGIGWLVVYYLSEQEYPVMSWgyWNLAVGFGAMVASLVLL 83
                5699**********98887888888888999************99998 PP

>> DUF3341  Protein of unknown function (DUF3341)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2     2e-05      0.07      23      80 ..       4      62 ..       1      81 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2e-05
                SS----EEB-SS.--TT-TTTSS--SS-STHHHHHHHHHHHHHHHHHHHIIIIISS--- CS
     DUF3341 23 agykkldvysPf.pvhgldealglkksrlpliallgGllGlalalllqvytsvvdypln 80
                ++++k  vy+P   v  +++a   k+s + l + +++l+ + +++l+++y s  +yp++
  KIR64459.1  4 SQVRKKKVYTPPtDVRPTATAATRKPSPVWLPVTAVALIVAGIGWLVVYYLSEQEYPVM 62
                67888999997549*******************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 637.67
//
Query:       KIR64460.1  [L=731]
Description: Fe-S oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-36  122.4   0.8      5e-17   61.9   0.1    2.7  2  CCG             Cysteine-rich domain
    3.4e-14   53.0   1.7    7.4e-14   51.9   0.5    2.2  2  Fer4_8          4Fe-4S dicluster domain
      1e-11   44.7   9.3    4.9e-11   42.6   5.8    3.0  2  Fer4_10         4Fe-4S dicluster domain
    2.2e-10   40.5   1.8    2.2e-10   40.5   1.8    2.2  1  Fer4_9          4Fe-4S dicluster domain
      2e-08   34.7   3.1     0.0032   18.0   0.2    2.9  2  Fer4_7          4Fe-4S dicluster domain
    1.1e-07   32.2   2.2      0.018   15.6   0.1    2.8  2  Fer4_17         4Fe-4S dicluster domain
    1.5e-06   27.7  12.5     0.0082   15.9   5.1    2.5  2  Fer4            4Fe-4S binding domain
    3.9e-06   27.7   3.6      0.065   14.2   0.5    2.7  2  Fer4_16         4Fe-4S double cluster binding domain
    0.00068   19.6  18.5     0.0013   18.7   1.1    2.9  2  Fer4_2          4Fe-4S binding domain
     0.0046   17.8  17.0      0.032   15.2   5.1    2.8  2  Fer4_3          4Fe-4S binding domain
      0.006   17.3   1.4        3.3    8.5   0.3    2.8  2  Fer4_15         4Fe-4S single cluster domain
      0.009   16.5  19.4        0.1   13.1   3.2    3.2  3  Fer4_4          4Fe-4S binding domain
  ------ inclusion threshold ------
       0.17   11.2   0.0       0.32   10.3   0.0    1.3  1  RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
       0.22   11.7  12.9        1.5    9.0   2.7    3.0  3  Fer4_21         4Fe-4S dicluster domain
       0.36   11.7  14.1       0.24   12.3   0.3    3.6  4  Fer4_22         4Fe-4S dicluster domain
        2.5    8.3   7.6        4.5    7.5   2.7    2.5  2  Fer4_18         4Fe-4S dicluster domain
        2.7    8.2  18.8       0.92    9.7   1.5    2.8  2  Fer4_6          4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> CCG  Cysteine-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.1   5.6e-19   5.9e-16       1      84 [.     472     563 ..     472     564 .. 0.92
   2 !   61.9   0.1   4.8e-20     5e-17       1      84 [.     602     689 ..     602     690 .. 0.98

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 5.6e-19
         CCG   1 vayfdgCh.llraaypevrkalkkllealgveleel.ekesCCGagggrsgkeelaealakrnvetaee......tgadaivtacpgCllql 84 
                 +++++gC+ + +++++++++a++ ll+++gv + +l e+e+C G++++r g+e +++ la++nvet++e      +  ++iv++cp+C+++l
  KIR64460.1 472 YLFWVGCAgAFEDRAKKTTRAVATLLNEAGVSFAILgEGETCTGDPARRIGNEFVFQMLAQQNVETLNEafdgreKSKRKIVATCPHCFNTL 563
                 68*****8888888*******************************************************6555433499**********998 PP

  == domain 2  score: 61.9 bits;  conditional E-value: 4.8e-20
         CCG   1 vayfdgChllraa..ypevrkalkkllealgveleel.ekesCCGagggrsgkee.laealakrnvetaeetgadaivtacpgCllql 84 
                 v+y+d+C+l+r++    ++r++l   ++ + +e++++ e++ CCGagg r+++ee + ++++  +ve+a++tga+ i++ cp+C+++l
  KIR64460.1 602 VTYHDPCYLGRHNrvFAAPREVLGDSVQGEITEMPRNsERSFCCGAGGARMWMEEkIGKRINVDRVEEAMSTGARTIAVGCPFCSTML 689
                 89***************************************************999******************************98 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.5   7.1e-17   7.4e-14       2      65 .]     297     405 ..     296     405 .. 0.66
   2 ?   -2.4   0.0       6.4   6.8e+03      15      34 ..     682     701 ..     679     713 .. 0.75

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 7.1e-17
      Fer4_8   2 lekCieCgaCqsaCpvlrr..................tkkhlldargeaae...........dvqeeqvlee........................... 44 
                 ++ C+eCg+Cqs+Cp++++                        +a++  a+                    +                           
  KIR64460.1 297 FSTCTECGRCQSQCPAWNTgkplspkllvlslrdhayA-----KAPYLLAGggkdltgdekaT--------Aaqlahvdvlalaeaekpliggasdggi 382
                 789************66665555555555555444441.....22222222333333332220........1234455566666777889999999*** PP

      Fer4_8  45 ..eealwsCttcgaCtevCpvgi 65 
                    + lwsCttcgaC+e+Cpv+i
  KIR64460.1 383 idPDVLWSCTTCGACVEQCPVDI 405
                 *9******************987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.4
      Fer4_8  15 Cpvlrrtkkhlldargeaae 34 
                 Cp+++++ ++  + +g  ++
  KIR64460.1 682 CPFCSTMLNDGVNGKGAGEQ 701
                 99999998888888877766 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   5.8   4.6e-14   4.9e-11       4      56 .]     295     402 ..     292     402 .. 0.93
   2 ?    1.8   0.0      0.25   2.6e+02      28      50 ..     539     561 ..     517     564 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 4.6e-14
     Fer4_10   4 idddtCirCgkCvkaCPadl.......................................................tsvgakgeaseeeavrkkvekCtg 47 
                 +d +tC++Cg+C++ CPa++                                                       ++    g+ +++  + +++++Ct+
  KIR64460.1 295 LDFSTCTECGRCQSQCPAWNtgkplspkllvlslrdhayakapyllagggkdltgdekataaqlahvdvlalaeaEKPLIGGASDGGIIDPDVLWSCTT 393
                 6889**************88*****************************************************9777777777778888888******* PP

     Fer4_10  48 cgaCveaCP 56 
                 cgaCve+CP
  KIR64460.1 394 CGACVEQCP 402
                 ********9 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.25
     Fer4_10  28 akgeaseeeavrkkvekCtgcga 50 
                 +++++ +e+ +rk v  C++c++
  KIR64460.1 539 NEAFDGREKSKRKIVATCPHCFN 561
                 567788899999*********86 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   1.8   2.1e-13   2.2e-10       2      49 ..     300     404 ..     299     406 .. 0.97

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 2.1e-13
      Fer4_9   2 CtgCgaCveaCpagvvvedaaerkarlraase.........................................................eaCigCgaCv 43 
                 Ct+Cg+C+++Cpa+ + +  +++   l  ++                                                          ++C++CgaCv
  KIR64460.1 300 CTECGRCQSQCPAWNTGKPLSPKLLVLSLRDHayakapyllagggkdltgdekataaqlahvdvlalaeaekpliggasdggiidpdvlWSCTTCGACV 398
                 **************************9998889****************************************************************** PP

      Fer4_9  44 eaCpkg 49 
                 e Cp +
  KIR64460.1 399 EQCPVD 404
                 ****98 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   1.4e-05     0.014      32      50 ..     294     312 ..     268     314 .. 0.76
   2 !   18.0   0.2   3.1e-06    0.0032      36      52 .]     389     405 ..     359     405 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-05
      Fer4_7  32 eidpekClgCgaCvavCPt 50 
                  +d ++C+ Cg+C++ CP+
  KIR64460.1 294 LLDFSTCTECGRCQSQCPA 312
                 457889***********95 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 3.1e-06
      Fer4_7  36 ekClgCgaCvavCPtga 52 
                 ++C++CgaCv+ CP+++
  KIR64460.1 389 WSCTTCGACVEQCPVDI 405
                 58************985 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.4   2.3e-05     0.024      42      58 ..     296     312 ..     273     313 .. 0.82
   2 !   15.6   0.1   1.7e-05     0.018      38      60 ..     383     405 ..     352     406 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.3e-05
     Fer4_17  42 kaslCieCgeCerkCPq 58 
                  +s+C+eCg+C+++CP+
  KIR64460.1 296 DFSTCTECGRCQSQCPA 312
                 5789************5 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.7e-05
     Fer4_17  38 ekeekaslCieCgeCerkCPqgl 60 
                 ++ ++  +C++Cg C+++CP ++
  KIR64460.1 383 IDPDVLWSCTTCGACVEQCPVDI 405
                 45567789************886 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.8   8.2e-06    0.0087       4      19 ..     296     311 ..     294     312 .. 0.92
   2 !   15.9   5.1   7.8e-06    0.0082       8      21 ..     391     404 ..     390     405 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.2e-06
                 ETTTSSS-THHHHHST CS
        Fer4   4 deekCigCGaCvevCP 19 
                 d + C+ CG+C + CP
  KIR64460.1 296 DFSTCTECGRCQSQCP 311
                 8899************ PP

  == domain 2  score: 15.9 bits;  conditional E-value: 7.8e-06
                 SSS-THHHHHSTTT CS
        Fer4   8 CigCGaCvevCPvg 21 
                 C+ CGaCve CPv+
  KIR64460.1 391 CTTCGACVEQCPVD 404
                 *************8 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   0.00012      0.12       1      18 [.     299     316 ..     299     353 .. 0.87
   2 !   14.2   0.5   6.2e-05     0.065       2      15 ..     391     404 ..     390     426 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00012
     Fer4_16   1 rCgtCgkCaevCPtnaik 18 
                 +C++Cg+C + CP+    
  KIR64460.1 299 TCTECGRCQSQCPAWNTG 316
                 5************87655 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 6.2e-05
     Fer4_16   2 CgtCgkCaevCPtn 15 
                 C+tCg+C+e CP++
  KIR64460.1 391 CTTCGACVEQCPVD 404
                 ************97 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   1.1   1.2e-06    0.0013       4      22 .]     294     312 ..     291     312 .. 0.88
   2 !   12.7   2.6    0.0001      0.11       6      21 ..     384     402 ..     381     403 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.2e-06
      Fer4_2   4 vvdtdrCigCgaCvsaCPa 22 
                   d  +C++Cg C+s CPa
  KIR64460.1 294 LLDFSTCTECGRCQSQCPA 312
                 67889*************8 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.0001
      Fer4_2   6 dtd...rCigCgaCvsaCP 21 
                 d+d   +C+ CgaCv  CP
  KIR64460.1 384 DPDvlwSCTTCGACVEQCP 402
                 6666669************ PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   4.0    0.0078       8.2       1      12 [.     300     311 ..     300     315 .. 0.94
   2 !   15.2   5.1   3.1e-05     0.032       1      14 [.     391     404 ..     391     405 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0078
      Fer4_3   1 CtgCgaCvevCP 12 
                 Ct Cg+C   CP
  KIR64460.1 300 CTECGRCQSQCP 311
                 ************ PP

  == domain 2  score: 15.2 bits;  conditional E-value: 3.1e-05
      Fer4_3   1 CtgCgaCvevCPvg 14 
                 Ct CgaCve CPv+
  KIR64460.1 391 CTTCGACVEQCPVD 404
                 ************97 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.011        12       3      19 ..     295     321 ..     294     362 .. 0.69
   2 !    8.5   0.3    0.0031       3.3       7      22 ..     390     405 ..     386     429 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
     Fer4_15   3 vDrdaCigcglCvaea..........p 19 
                 +D ++C+ cg+C   +          p
  KIR64460.1 295 LDFSTCTECGRCQSQCpawntgkplsP 321
                 6889************55555555555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0031
     Fer4_15   7 aCigcglCvaeapevf 22 
                  C+ cg+Cv+ +p  +
  KIR64460.1 390 SCTTCGACVEQCPVDI 405
                 7***********9433 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   3.2   9.9e-05       0.1       3      16 ..     299     312 ..     297     317 .. 0.90
   2 !   12.9   2.5   0.00012      0.12       3      16 ..     390     403 ..     389     409 .. 0.93
   3 ?   -2.1   0.4       7.7   8.1e+03       5      10 ..     680     685 ..     679     685 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.9e-05
      Fer4_4   3 rCigCgsCvaaCPq 16 
                 +C++Cg+C + CP 
  KIR64460.1 299 TCTECGRCQSQCPA 312
                 7************5 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00012
      Fer4_4   3 rCigCgsCvaaCPq 16 
                 +C+ Cg+Cv  CP+
  KIR64460.1 390 SCTTCGACVEQCPV 403
                 6************7 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 7.7
      Fer4_4   5 igCgsC 10 
                 +gC+ C
  KIR64460.1 680 VGCPFC 685
                 689998 PP

>> RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0003      0.32      33      73 ..     367     410 ..     350     413 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0003
                     STSSSSBBSSSSSSSSS-SSSSSTSTTTSSTTTT---...--EE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxx RF
  RNA_pol_Rpb1_1  33 ekslkPeegGllDerlgtidkdleCetCgkkkkeCeg...hfGh 73 
                      + +kP  gG  D  +  +d  ++C+tCg   ++C++   h+ h
      KIR64460.1 367 AEAEKPLIGGASDGGIIDPDVLWSCTTCGACVEQCPVdieHVDH 410
                     45579********************************5555555 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.9    0.0034       3.6       6      52 ..     298     311 ..     292     315 .. 0.61
   2 ?    9.0   2.7    0.0014       1.5      40      54 ..     390     404 ..     383     408 .. 0.89
   3 ?   -1.3   0.0       2.4   2.5e+03      38      49 ..     676     687 ..     657     688 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0034
     Fer4_21   6 dkCigCgkCliaCedtshqaieidaktvlkvvedeCvGCnlCssvCP 52 
                 ++C +Cg+C   C                                 P
  KIR64460.1 298 STCTECGRCQSQC---------------------------------P 311
                 4555555555555.................................5 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0014
     Fer4_21  40 eCvGCnlCssvCPve 54 
                 +C+ C  C++ CPv+
  KIR64460.1 390 SCTTCGACVEQCPVD 404
                 6************94 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2.4
     Fer4_21  38 edeCvGCnlCss 49 
                     vGC  Cs+
  KIR64460.1 676 RTIAVGCPFCST 687
                 455689999986 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   0.00023      0.24      73      94 ..     291     312 ..     275     313 .. 0.81
   2 ?    6.1   1.7     0.019        21      81      96 .]     390     405 ..     386     405 .. 0.87
   3 ?   -1.6   0.1       4.9   5.2e+03      69      94 ..     631     656 ..     609     658 .. 0.77
   4 ?   -1.1   0.7       3.3   3.5e+03      67      91 ..     664     688 ..     640     693 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00023
     Fer4_22  73 fkekfgesgCvGCgRCieacpv 94 
                 +k   + s+C+ CgRC+++cp+
  KIR64460.1 291 WKGLLDFSTCTECGRCQSQCPA 312
                 445568899***********96 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.019
     Fer4_22  81 gCvGCgRCieacpvki 96 
                 +C+ Cg C+e+cpv+i
  KIR64460.1 390 SCTTCGACVEQCPVDI 405
                 6999999999999876 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 4.9
     Fer4_22  69 klsefkekfgesgCvGCgRCieacpv 94 
                  ++e+ ++ ++s C+G g   ++  +
  KIR64460.1 631 EITEMPRNSERSFCCGAGGARMWMEE 656
                 567788899999****9987777665 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 3.3
     Fer4_22  67 lhklsefkekfgesgCvGCgRCiea 91 
                 +++++e +++  ++  vGC  C+++
  KIR64460.1 664 VDRVEEAMSTGARTIAVGCPFCSTM 688
                 4566666677788889999999876 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2      0.16   1.7e+02      58      73 ..     297     312 ..     278     314 .. 0.86
   2 ?    7.5   2.7    0.0042       4.5      60      76 ..     390     406 ..     383     413 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.16
     Fer4_18  58 agdcidcescvkvcPt 73 
                  + c++c+ c + cP 
  KIR64460.1 297 FSTCTECGRCQSQCPA 312
                 568***********95 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0042
     Fer4_18  60 dcidcescvkvcPtgid 76 
                  c++c++cv+ cP++i+
  KIR64460.1 390 SCTTCGACVEQCPVDIE 406
                 6************9986 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.5   0.00087      0.92       8      21 ..     299     312 ..     298     316 .. 0.91
   2 ?    8.7   4.0    0.0018       1.9       8      22 ..     390     404 ..     390     407 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00087
      Fer4_6   8 kCigCgdCvrvCPe 21 
                  C+ Cg+C + CP+
  KIR64460.1 299 TCTECGRCQSQCPA 312
                 7************6 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0018
      Fer4_6   8 kCigCgdCvrvCPeg 22 
                 +C+ Cg+Cv  CP +
  KIR64460.1 390 SCTTCGACVEQCPVD 404
                 6************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 5532.11
//
Query:       KIR64461.1  [L=333]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-35  119.8   3.8    1.3e-34  119.4   3.8    1.1  1  DUF21     Cyclin M transmembrane N-terminal domain
    1.5e-12   47.7   0.9    2.2e-07   31.2   0.4    2.5  2  CBS       CBS domain


Domain annotation for each model (and alignments):
>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   3.8   1.5e-38   1.3e-34       1     176 []       5     198 ..       5     198 .. 0.97

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 1.5e-38
       DUF21   1 liivlllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellae............galavv 87 
                 l++vllll++aff+g+E+Al++ +r+ +e la+  +k+a+ +l+ +++   +++ +++g+t+++++l+a+a++++++l+++            + la++
  KIR64461.1   5 LVTVLLLLGNAFFVGSEFALIASRRTVIEPLAAG-SKRARWALSAMNQIPLMIAGAQLGITICSLGLGAIAEPALAHLIEPlfhalglpdgavHPLAFL 102
                 57899***********************988875.68************************************************************** PP

       DUF21  88 iatvivtllilvfgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil.......esesepavseeelkklveeseeegvieeee 176
                 ia+ +v++l+ v+gE++Pk++ l+ +e+ al+l p +  + + ++Pl+  +++ ++ +l       +++ +++++ eel  lv++++ eg +++ee
  KIR64461.1 103 IALGVVVFLHTVVGEMVPKNITLAGPEPSALWLGPAMLAFCTATKPLLLAMKWASRQVLriwrveaTDAVKTVFTAEELAGLVSQARTEGLLDAEE 198
                 *****************************************************************9999************************998 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.6e-06     0.041      17      54 ..     234     269 ..     215     271 .. 0.71
   2 !   31.2   0.4   2.4e-11   2.2e-07       7      56 ..     284     332 ..     281     333 .] 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.6e-06
                 BHHHHHHHHHHHTSSEEEEEETTT.BEEEEEEHHHHHHH CS
         CBS  17 tleealelmrekgvsrlPVVdedg.klvGivtlrDllra 54 
                 +le ++    ++g sr+PVV     +++G v+ +D+l +
  KIR64461.1 234 SLEVLAT---RTGRSRFPVVQRATrRVLGFVHVKDVLGY 269
                 4444443...55569*****766657**********986 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 2.4e-11
                 SSCEEEETTSBHHHHHHHHHHHTSSEEEE.EETTT.BEEEEEEHHHHHHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvsrlPV.Vdedg.klvGivtlrDllrall 56 
                 +++ +vppd tl+++l  mr+++ +++ V V +dg +++G+vtl D+l a++
  KIR64461.1 284 HPLAVVPPDRTLADLLLSMRRER-RHM-VlV-SDGrRPLGVVTLDDVLTAIV 332
                 57899**************8887.799.648.67757************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2442.34
//
Query:       KIR64462.1  [L=346]
Description: glycoside hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-23   81.0   0.0    1.1e-22   80.1   0.0    1.4  1  NLPC_P60       NlpC/P60 family
     0.0016   18.6   1.2      0.047   14.0   0.0    2.8  3  DUF948         Bacterial protein of unknown function (DUF948)
     0.0031   17.7   7.7       0.43   10.8   5.5    2.7  2  Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
     0.0082   16.3   0.6       0.26   11.3   0.0    2.9  3  Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX
     0.0094   15.6   3.5        1.7    8.2   0.0    2.1  2  PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subun
  ------ inclusion threshold ------
      0.015   15.4   9.1       0.21   11.7   3.9    2.2  2  TPR_MLP1_2     TPR/MLP1/MLP2-like protein
      0.017   15.5   2.3      0.046   14.0   1.9    1.8  1  zf-C4H2        Zinc finger-containing protein
      0.021   14.8   0.0        2.2    8.3   0.0    2.1  2  DUF4446        Protein of unknown function (DUF4446)
      0.025   14.3   0.5      0.025   14.3   0.5    1.9  2  Laminin_I      Laminin Domain I
      0.043   13.4   1.0       0.45   10.1   0.1    2.1  2  Phage_GPO      Phage capsid scaffolding protein (GPO) serine 
      0.061   13.4   5.0        7.1    6.7   3.4    2.1  2  Mod_r          Modifier of rudimentary (Mod(r)) protein
      0.096   12.6   0.2       0.38   10.6   0.2    1.9  1  Amidase_5      Bacteriophage peptidoglycan hydrolase
       0.11   12.9   3.0        7.7    6.9   1.1    2.4  2  BLOC1_2        Biogenesis of lysosome-related organelles comp
       0.15   12.8   4.3       0.73   10.6   1.0    2.2  2  DUF2203        Uncharacterized conserved protein (DUF2203)
       0.16   12.1   6.6       0.98    9.5   2.4    2.2  2  ADIP           Afadin- and alpha -actinin-Binding
       0.16   12.2   0.4       0.41   11.0   0.1    1.8  1  LRAT           Lecithin retinol acyltransferase
       0.18   11.9   0.1        5.4    7.2   0.0    2.4  2  GPHR_N         The Golgi pH Regulator (GPHR) Family N-termina
       0.19   11.8   2.7        1.3    9.1   0.8    2.2  2  COG2           COG (conserved oligomeric Golgi) complex compo
       0.24   10.8   3.8        1.6    8.1   1.9    2.0  2  Cluap1         Clusterin-associated protein-1
       0.25   10.7  11.6        0.8    9.0   2.8    2.2  2  DUF4407        Domain of unknown function (DUF4407)
       0.26   10.7   7.8        2.3    7.6   3.7    2.2  2  DUF3552        Domain of unknown function (DUF3552)
       0.27   11.3   8.5        2.1    8.4   0.1    2.2  2  FlxA           FlxA-like protein
       0.35   11.3   3.6         19    5.8   2.1    2.2  2  TBCC_N         Tubulin-specific chaperone C N-terminal domain
       0.41   10.7  13.6        1.6    8.8   6.6    2.2  2  DHR10          Designed helical repeat protein 10 domain
       0.47   10.5   2.4        5.3    7.1   0.7    2.4  2  DUF1664        Protein of unknown function (DUF1664)
       0.74    9.4   3.3         17    5.0   1.2    2.2  2  Fzo_mitofusin  fzo-like conserved region
       0.93    9.5   3.1         12    5.9   2.2    2.1  2  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
       0.94    8.9   4.0         16    4.8   1.1    2.4  2  Mce4_CUP1      Cholesterol uptake porter CUP1 of Mce4, putati
       0.95    9.8   4.3        5.7    7.3   0.7    2.7  2  DUF3040        Protein of unknown function (DUF3040)
       0.96    8.7  10.0        2.1    7.5   0.1    2.1  2  HemX           HemX, putative uroporphyrinogen-III C-methyltr
       0.97    9.7   2.6        1.5    9.1   0.5    2.0  2  Spc24          Spc24 subunit of Ndc80
          1    9.8   8.1        3.2    8.1   0.4    3.4  3  kleA_kleC      Uncharacterized KorC regulated protein A
        1.4    8.8  11.3        2.2    8.1   3.7    2.7  2  DivIC          Septum formation initiator
        3.6    7.8   7.3         27    5.0   0.1    2.3  2  Cortex-I_coil  Cortexillin I, coiled coil
        3.7    6.1   6.6         41    2.6   6.6    1.9  1  AAA_13         AAA domain
          4    6.2  10.7        1.7    7.4   5.0    2.0  2  Spc7           Spc7 kinetochore protein
        4.9    7.3  12.3        1.5    9.0   6.1    2.1  2  ATG16          Autophagy protein 16 (ATG16)
        6.4    7.2   9.4        9.1    6.7   4.5    2.2  2  DUF4200        Domain of unknown function (DUF4200)
          9    4.3  11.5       0.45    8.6   3.9    2.2  3  HOOK           HOOK protein
        9.5    6.8   8.7         11    6.5   3.5    2.2  2  APG6_N         Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   2.4e-25   1.1e-22       1      88 [.     246     329 ..     246     340 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 2.4e-25
                 T-BB-TT--BTTEB-HHHHHHHHHHTTT----SSHHHHCCCSEE..EEGGG--TTEEEEESGTGGESEEEEEEETTEEEEEETTEEEE CS
    NLPC_P60   1 gkpYrwGGkspsgfDCsglvryafakagielprssgeqeaagkkkeiskselkrGDLvffktkkgisHvgiYlgngkmlhassekvsv 88 
                 gkpY+wG + p+ +DCsgl+ +a+akag++lp+++ +q++++ k  +s+++l++GDLvf+ +    +Hvg+Y+g+g+++has+ +v v
  KIR64462.1 246 GKPYVWGAEGPNSYDCSGLMLAAWAKAGVSLPHNAAQQRSVTAK--VSRADLRPGDLVFYYS--DLHHVGMYVGGGWVVHASRAGVPV 329
                 89*************************************99999..**************99..9*****************777654 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0    0.0001     0.047      14      84 ..      36     106 ..      31     111 .. 0.88
   2 ?    5.6   0.0     0.042        19      25      57 ..      89     121 ..      85     134 .. 0.73
   3 ?    1.9   0.4       0.6   2.7e+02      44      72 ..     171     199 ..     139     211 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 0.0001
      DUF948  14 viflivvllklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesv 84 
                 +++ + v+l  + t+ +a  +++e+e+q+d+  +++e +++  n++ +d+  k ++ d+l + ++ l ++v
  KIR64462.1  36 ALVGVAVVLTGAPTVAHADPSVAEIERQIDEDWNKLEPIIERHNATRQDLAAKRKQADALAARIGPLQRQV 106
                 5666777777799***********************************************99998887776 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.042
      DUF948  25 kktldeaaatieelekqvdpilkevedllakvn 57 
                 +k +d++aa+i  l++qvd+ lk+v +l a++ 
  KIR64462.1  89 RKQADALAARIGPLQRQVDEALKKVGGLAAEAY 121
                 566777888888888888888888877777665 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.6
      DUF948  44 pilkevedllakvnelledvneklekvdp 72 
                 +  + +++++a+  ++ +++  k +++++
  KIR64462.1 171 AKKQPLDEMVAQLTRTEAQLAAKKKQINA 199
                 33333333333333333333333333333 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.046        21      78     130 ..      55     107 ..      50     115 .. 0.83
   2 !   10.8   5.5   0.00096      0.43      65     124 ..     146     206 ..     144     211 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.046
  Jnk-SapK_ap_N  78 eeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelk 130
                      + eie q++e+ ++l+  +e+ +  ++ l +k k+a+  ++r+   + ++ 
     KIR64462.1  55 PSVAEIERQIDEDWNKLEPIIERHNATRQDLAAKRKQADALAARIGPLQRQVD 107
                    66789***************************999999888887766666655 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00096
  Jnk-SapK_ap_N  65 eyerekelrkrae.eeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrlee 124
                    e+ ++ ++r++++ + +  + d++  +++ l+e+v+ql+  + +l +k k+++ ++ rl++
     KIR64462.1 146 ELLDRFAQRQQHDvQAVVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQK 206
                    4455556666666566677777777777777777777777777777777777777777764 PP

>> Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       3.3   1.5e+03      43      71 ..     161     191 ..     142     207 .. 0.61
   2 !   11.3   0.0   0.00059      0.26      84     134 ..     236     284 ..     234     296 .. 0.84
   3 ?    1.4   0.1      0.68   3.1e+02      26      50 ..     305     325 ..     294     336 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3.3
  Peptidase_C92  43 lvveaaakegvrvtpLseflar..rssiavy 71 
                     vv+  ++   +++pL+e +a+  r++++++
     KIR64462.1 161 AVVDLRDELAAKKQPLDEMVAQltRTEAQLA 191
                    4555555556667777777777554444444 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00059
  Peptidase_C92  84 kaaeaalrrlgkpYdfgFeleddrlYCsklVakaykealgikvktvellgk 134
                    +a+++a +++gkpY +g     +++ Cs l  +a+ +++g+ +++  + ++
     KIR64462.1 236 TAVKFACAQIGKPYVWG-AEGPNSYDCSGLMLAAW-AKAGVSLPHNAAQQR 284
                    689**************.5559*************.777999887666555 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.68
  Peptidase_C92  26 sefkHvgivvgeegderlvveaaak 50 
                    s+  Hvg++vg      +vv+a+++
     KIR64462.1 305 SDLHHVGMYVGG----GWVVHASRA 325
                    567899999873....477777543 PP

>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0039       1.7      21      57 ..      59      95 ..      53     112 .. 0.88
   2 !    7.5   1.3    0.0065       2.9      21      56 ..     164     199 ..     141     211 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0039
  PI3K_P85_iSH2 21 evskqlqekskeydqlkeeynkiseeiqlkrqaleaF 57
                   e++ q+ e  ++++ + e  n+++++++ kr + +a 
     KIR64462.1 59 EIERQIDEDWNKLEPIIERHNATRQDLAAKRKQADAL 95
                   889999*************************999986 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0065
  PI3K_P85_iSH2  21 evskqlqekskeydqlkeeynkiseeiqlkrqalea 56 
                    ++ ++l  k++ +d++  + ++++ +++ k+ +++a
     KIR64462.1 164 DLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINA 199
                    566778888888888888888888888888888876 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2     0.019       8.5      49      86 ..      75     112 ..      52     119 .. 0.86
   2 ?   11.7   3.9   0.00047      0.21      50     103 ..     153     206 ..     149     209 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.019
  TPR_MLP1_2  49 lvkhaedvkelqalreelnelkaeiaelkaeaesakae 86 
                 +  h+++ ++l+a r++++ l a+i  l+ ++++a ++
  KIR64462.1  75 IERHNATRQDLAAKRKQADALAARIGPLQRQVDEALKK 112
                 56899**************************9998765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00047
  TPR_MLP1_2  50 vkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelek 103
                 + +  dv+++ +lr+el+  k+ + e+ a++ +++a+l++++++++ + ++l+k
  KIR64462.1 153 QRQQHDVQAVVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQK 206
                 67889****************************************999999886 PP

>> zf-C4H2  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.9    0.0001     0.046      52     105 ..      59     115 ..      54     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 0.0001
     zf-C4H2  52 eeLrlIhaDinalEsvike...aeeekekslekakklyeeykklkeevnelrselgl 105
                 e  r+I++D n+lE +i++   ++++   + ++a  l + + +l+++v+e ++++g 
  KIR64462.1  59 EIERQIDEDWNKLEPIIERhnaTRQDLAAKRKQADALAARIGPLQRQVDEALKKVGG 115
                 5569*************8622256777889999******************999653 PP

>> DUF4446  Protein of unknown function (DUF4446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0048       2.2      38     106 ..      66     135 ..      31     138 .. 0.75
   2 ?    4.4   0.1     0.076        34      41      95 ..     163     217 ..     140     218 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0048
     DUF4446  38 kdgksleellkekleeveelkeesee...lekeieeleeklkkslqkvglvrYdAFeemGgdLSFalalLde 106
                 +d ++le +++++ ++ ++l ++ ++   l ++i  l+++++++l+kvg +  +A++  G++LS + alL +
  KIR64462.1  66 EDWNKLEPIIERHNATRQDLAAKRKQadaLAARIGPLQRQVDEALKKVGGLAAEAYK--GDNLSVVNALLGS 135
                 46677888888777766666655544344999*******************999997..99***99999965 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.076
     DUF4446  41 ksleellkekleeveelkeeseelekeieeleeklkkslqkvglvrYdAFeemGg 95 
                  +l + l+ k + ++e+ ++ +++e+++++ ++++++ +++++ +r + + + Gg
  KIR64462.1 163 VDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQKLRLKVYGNGGG 217
                 5788888888899999999999999999999999999998888888887777765 PP

>> Laminin_I  Laminin Domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.5   5.6e-05     0.025      49     144 ..      57     156 ..      49     164 .. 0.85
   2 ?    0.5   0.6      0.91   4.1e+02      16      60 ..     178     205 ..     157     211 .. 0.45

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.6e-05
   Laminin_I  49 lesLaqeteeLqkkatqvlakaqkvnaesertlnnakeLaekikkladnikeilekvatlne...neealpssklseelaeaqrlLeelrsRd.ftkql 143
                 + +++ +++e  +k++   ++++ ++++  +  ++a +La+ i  l++++ e+l+kv  l     ++++l++ +        ++++++l   d f + +
  KIR64462.1  57 VAEIERQIDEDWNKLEPIIERHNATRQDLAAKRKQADALAARIGPLQRQVDEALKKVGGLAAeayKGDNLSVVNALLGSRTPSQMMGQLELLDrFAQRQ 155
                 567777888888888999999999***********************************9998999999999999999999999999999888555544 PP

   Laminin_I 144 e 144
                 +
  KIR64462.1 156 Q 156
                 4 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.91
   Laminin_I  16 kinanledltkeLqeklskesakkskieilekelesLaqeteeLq 60 
                 ++ a+l  ++ +L  k                  ++++ e+++Lq
  KIR64462.1 178 EMVAQLTRTEAQLAAKK-----------------KQINAEIDRLQ 205
                 22222222222222222.................33344444443 PP

>> Phage_GPO  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.34   1.5e+02     205     253 ..      56     104 ..      46     125 .. 0.60
   2 ?   10.1   0.1   0.00099      0.45     183     247 ..     146     210 ..     131     220 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.34
   Phage_GPO 205 lvAeevkelsekveallaleaelaalkkeveklkaeleaLkekLsktda 253
                  vAe  ++++e+ ++l+   ++++a +++++ ++++++aL +++   ++
  KIR64462.1  56 SVAEIERQIDEDWNKLEPIIERHNATRQDLAAKRKQADALAARIGPLQR 104
                 5666666666666666666666666666666666666666666544333 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00099
   Phage_GPO 183 allskkkksddarfadveeavelvAeevkelsekveallaleaelaalkkeveklkaeleaLkek 247
                 +ll +  ++++++++ v +  +++A++ + l+e v++l+++ea+laa kk+++ + ++l++L+ k
  KIR64462.1 146 ELLDRFAQRQQHDVQAVVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQKLRLK 210
                 5788888999999999999999**************99999999999999999999999988765 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.027        12      43      92 ..      61     114 ..      48     121 .. 0.75
   2 ?    6.7   3.4     0.016       7.1      16      74 ..     146     208 ..     139     212 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.027
       Mod_r  43 eslaeknlsl.ep...eleelrselqekleelkelekefeekeqeldellqkfs 92 
                 e+  ++  ++ ep   + +  r++l++k++++++l ++   ++++ de+l+k++
  KIR64462.1  61 ERQIDEDWNKlEPiieRHNATRQDLAAKRKQADALAARIGPLQRQVDEALKKVG 114
                 444433444437777788889999999999999999999999999999998865 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.016
       Mod_r  16 eklealvktl.pevkqlkeekeellaeneslae..knlsl.epeleelrselqekleelkele 74 
                 e+l+++++   + v+++ + ++el a+ + l e  ++l + e +l  ++++++++++ l++l+
  KIR64462.1 146 ELLDRFAQRQqHDVQAVVDLRDELAAKKQPLDEmvAQLTRtEAQLAAKKKQINAEIDRLQKLR 208
                 778888875547788888888888777776665223344445588888888888888888775 PP

>> Amidase_5  Bacteriophage peptidoglycan hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00085      0.38      24      46 ..     254     276 ..     249     335 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00085
   Amidase_5  24 lGPnsydcsssvyfaliaaGals 46 
                 +GPnsydcs  +  a   aG++ 
  KIR64462.1 254 EGPNSYDCSGLMLAAWAKAGVSL 276
                 7********99999999998864 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.049        22      44      82 ..      83     121 ..      57     128 .. 0.60
   2 ?    6.9   1.1     0.017       7.7      19      72 ..     156     209 ..     145     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.049
     BLOC1_2  44 aslekkleklnekyeelqpylqqidqiekqvteLeeavs 82 
                 ++l++k ++ +++ + + p+ +q+d+  k+v  L + ++
  KIR64462.1  83 QDLAAKRKQADALAARIGPLQRQVDEALKKVGGLAAEAY 121
                 345555555555555666666666666666666666555 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.017
     BLOC1_2  19 vedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiek 72 
                 + d++ +  l  + ++k + l++++a+l+++  +l +k+++++  +++++++  
  KIR64462.1 156 QHDVQAVVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQKLRL 209
                 5677777777788889999999**********************9999999875 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.32   1.4e+02      16      70 ..      58     114 ..      48     127 .. 0.52
   2 ?   10.6   1.0    0.0016      0.73      12      76 ..     145     211 ..     137     215 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.32
     DUF2203  16 kelleelralrkeleeleeeleeakaeaekse..aaeleaeleeleaeieelveeie 70 
                  e+ +++ +  ++le + e+ ++++++ +++   a +l+a++  l+ +++e+++++ 
  KIR64462.1  58 AEIERQIDEDWNKLEPIIERHNATRQDLAAKRkqADALAARIGPLQRQVDEALKKVG 114
                 333333444444444444444333333322222366666666666666666666665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0016
     DUF2203  12 Lpllkelleelralrkeleeleeeleeakaeaekse..aaeleaeleeleaeieelveeieelGvev 76 
                 L ll++  ++ ++  + + +l++el+++k+  ++     ++ ea+l++ +++i++ ++++++l  +v
  KIR64462.1 145 LELLDRFAQRQQHDVQAVVDLRDELAAKKQPLDEMVaqLTRTEAQLAAKKKQINAEIDRLQKLRLKV 211
                 78889999999999999999999999999987665577899999*****************998776 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.074        33      47      95 ..      63     111 ..      57     122 .. 0.87
   2 ?    9.5   2.4    0.0022      0.98      40     124 ..     128     210 ..     123     212 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.074
        ADIP  47 ardrdleqreslnetirkleaeierlqskierlktqleqlerelalvqa 95 
                 + d+d +  e   e+++  + +++ ++++ + l ++   l+r+++ + +
  KIR64462.1  63 QIDEDWNKLEPIIERHNATRQDLAAKRKQADALAARIGPLQRQVDEALK 111
                 78999999999999************************99999996655 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0022
        ADIP  40 viysLlqard..rdleqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlkna 124
                 v+++Ll +r   + + q e+l +  ++ +++ +     +  l ++l+++++ l+   a+++ +e++l++ +++++ e + lq+l+ +
  KIR64462.1 128 VVNALLGSRTpsQMMGQLELLDRFAQRQQHDVQA----VVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQKLRLK 210
                 6667777664113455566666666666666555....8889999999999999999999999999999999999999999999976 PP

>> LRAT  Lecithin retinol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00092      0.41       3      35 ..     295     326 ..     293     339 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00092
                 --TT-EEEEE-SSSEEEEEEEETTEEEEEE-SB CS
        LRAT   3 lkrGdllevsRtlyeHhgiyvGdgkVvHltpes 35 
                 l++Gdl+  +    +H g yvG+g VvH +++ 
  KIR64462.1 295 LRPGDLVFYY-SDLHHVGMYVGGGWVVHASRAG 326
                 6789998844.566899***********99876 PP

>> GPHR_N  The Golgi pH Regulator (GPHR) Family N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.012       5.4      17      67 ..      32      91 ..      31      92 .. 0.79
   2 ?    2.1   0.1      0.48   2.1e+02      49      68 .]     178     197 ..     158     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.012
      GPHR_N 17 tlmAiLSGfGavstpyetfslf.......krpvte..adinslearlehtrellaekrke 67
                t++A+L G++ v t   t+ +        +r++ e  +++  +++r ++tr++la+krk+
  KIR64462.1 32 TVLAALVGVAVVLTGAPTVAHAdpsvaeiERQIDEdwNKLEPIIERHNATRQDLAAKRKQ 91
                89999999999999999998843333444777776678888999**************97 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.48
      GPHR_N  49 slearlehtrellaekrkel 68 
                  + a+l +t ++la+k+k++
  KIR64462.1 178 EMVAQLTRTEAQLAAKKKQI 197
                 5678999**********985 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.42   1.9e+02      70     112 ..      56      98 ..      49     127 .. 0.72
   2 ?    9.1   0.8     0.003       1.3      64     112 ..     162     210 ..     159     213 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.42
        COG2  70 eleevesplaaarkkvesvreklsereeeveskleeakeleek 112
                 ++ e+e ++ + ++k+e ++e  +++++++ +k ++a +l++ 
  KIR64462.1  56 SVAEIERQIDEDWNKLEPIIERHNATRQDLAAKRKQADALAAR 98 
                 5677778888888888888888888888888887777776654 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.003
        COG2  64 Lvglqeeleevesplaaarkkvesvreklsereeeveskleeakeleek 112
                  v+l++el   ++pl +++ +++ ++++l++++++++++++  ++l+ k
  KIR64462.1 162 VVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQKLRLK 210
                 5899*************************************99999875 PP

>> Cluap1  Clusterin-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.19        83     158     213 ..      52     110 ..      41     118 .. 0.67
   2 ?    8.1   1.9    0.0036       1.6     170     216 ..     162     209 ..     140     214 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.19
      Cluap1 158 srqleleeiekalkeaikkvk...eelektkkalenlesdeanLeakiekkkqeleraq 213
                 +++ +++eie+++ e  +k++   e+ + t+++l+  +++ ++L+a+i   +++++ a 
  KIR64462.1  52 HADPSVAEIERQIDEDWNKLEpiiERHNATRQDLAAKRKQADALAARIGPLQRQVDEAL 110
                 56777889999999887777722244455666666666777777777776666666555 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0036
      Cluap1 170 lkeaikkvkeelektkkalenlesdeanLeakiekkkqeleraqk.rL 216
                 + +  ++++++ + + +++++l+++ea+L+ak ++ ++e++r qk rL
  KIR64462.1 162 VVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQKlRL 209
                 3445567777888889999999********************998455 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.5    0.0069       3.1     185     246 ..      57     119 ..      30     135 .. 0.71
   2 ?    9.0   2.8    0.0018       0.8     112     171 ..     148     205 ..     125     222 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0069
     DUF4407 185 akekkaqldaaqaelaelkakld........atarlaalraelaeleaerakeraasqaaaaaddGllar 246
                   e ++q+d+  ++l       +         +++laa+r++++ l+a++   +++ ++a ++  Gl+a+
  KIR64462.1  57 VAEIERQIDEDWNKL-------EpiierhnaTRQDLAAKRKQADALAARIGPLQRQVDEALKKVGGLAAE 119
                 333333333333333.......244445556788899999999999999999999999999999999887 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0018
     DUF4407 112 laeeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk 171
                 l++++q+++ ++++ ++  l++ela+ ++ ++++ a+++  ea+l+a++++ ++e+d  +
  KIR64462.1 148 LDRFAQRQQHDVQAVVD--LRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQ 205
                 45666777777777777..88888888888888888888888888888888888887643 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.034        15      91     150 ..      61     120 ..      50     133 .. 0.84
   2 ?    7.6   3.7    0.0051       2.3      85     125 ..     167     207 ..     145     212 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.034
     DUF3552  91 eetLdrkeeslekkeesleekekelkqkeqsleekeeeleelveeqrqeLerisgLtkee 150
                 e ++d+  ++le   e+ ++++++l++k+++ ++  +++  l+++ ++ L+++ gL +e 
  KIR64462.1  61 ERQIDEDWNKLEPIIERHNATRQDLAAKRKQADALAARIGPLQRQVDEALKKVGGLAAEA 120
                 5666777777777777778899999999999************************99885 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0051
     DUF3552  85 kRllqkeetLdrkeeslekkeesleekekelkqkeqsleek 125
                 + l  k++ Ld+  ++l + e++l +k+k+++++ ++l++ 
  KIR64462.1 167 DELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQKL 207
                 34555555566666666666666666666655555555543 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0046       2.1      15      65 ..      53     106 ..      47     112 .. 0.83
   2 ?    4.4   4.5      0.08        36      17      62 ..     160     205 ..     150     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0046
        FlxA  15 sasqiasLqkQiknlqkqLkelsesdeltkeekk...kqqqliqaQIqqlqaQI 65 
                  +  +a++++Qi++  ++L+ + e  + t ++     kq++ + a I  lq Q+
  KIR64462.1  53 ADPSVAEIERQIDEDWNKLEPIIERHNATRQDLAakrKQADALAARIGPLQRQV 106
                 5778999**************99996666665443349**************98 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.08
        FlxA  17 sqiasLqkQiknlqkqLkelsesdeltkeekkkqqqliqaQIqqlq 62 
                 + +  L+ +++  ++ L+e+ ++ + t+ +  +++++i a+I+ lq
  KIR64462.1 160 QAVVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQ 205
                 5566788888888999999999989999999999999999999998 PP

>> TBCC_N  Tubulin-specific chaperone C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.081        36      30      82 ..      56     109 ..      48     122 .. 0.79
   2 ?    5.8   2.1     0.041        19      25      78 ..     156     207 ..     144     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.081
      TBCC_N  30 kvdsFlkaFteekaaieellesve.esadksklkqkldeitaeiqeLqkllaes 82 
                 +v++++++++e  +++e  +e+ +   +d ++++++ d+++a+i  Lq+ + e+
  KIR64462.1  56 SVAEIERQIDEDWNKLEPIIERHNaTRQDLAAKRKQADALAARIGPLQRQVDEA 109
                 666777777777778888888887777888888899999999999999887765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.041
      TBCC_N  25 aveeekvdsFlkaFteekaaieellesveesadksklkqkldeitaeiqeLqkl 78 
                 + + + v    ++++++k+ ++e++++++    +++l++k ++i+aei++Lqkl
  KIR64462.1 156 QHDVQAVVDLRDELAAKKQPLDEMVAQLT--RTEAQLAAKKKQINAEIDRLQKL 207
                 444455666788999999**********9..88889999999999999999996 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.6     0.025        11      43      93 ..      62     112 ..      56     120 .. 0.86
   2 ?    8.8   6.6    0.0036       1.6      41      96 ..     144     199 ..     139     209 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.025
       DHR10  43 eeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeek 93 
                  +i ++ +kle   ++ +++r+ l+ k++++  l +++  lqrq++ a +k
  KIR64462.1  62 RQIDEDWNKLEPIIERHNATRQDLAAKRKQADALAARIGPLQRQVDEALKK 112
                 56788888999999999999************************9988766 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0036
       DHR10  41 lleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeekler 96 
                 +le + +  ++++   + + +lrd+l+ k++ l e+ ++ +r + ql+ ++++++ 
  KIR64462.1 144 QLELLDRFAQRQQHDVQAVVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINA 199
                 56666666788888888899999999999999999999999999998888877654 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.27   1.2e+02      64     115 ..      60     111 ..      49     119 .. 0.66
   2 ?    7.1   0.7     0.012       5.3      43      72 ..     176     205 ..     144     211 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.27
     DUF1664  64 Lssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegles 115
                 ++++id+  +kl+  +e  +++++++++ r++ +++   +  +++ v +  +
  KIR64462.1  60 IERQIDEDWNKLEPIIERHNATRQDLAAKRKQADALAARIGPLQRQVDEALK 111
                 4555666666677777777777777777777777777776666666655444 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.012
     DUF1664  43 vesvskqleqvseslaatkrhLssridrvd 72 
                 ++++  ql++  ++laa k++++++idr++
  KIR64462.1 176 LDEMVAQLTRTEAQLAAKKKQINAEIDRLQ 205
                 345666777777777777777777777765 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.062        28     103     154 ..      57     108 ..      48     112 .. 0.78
   2 ?    5.0   1.2     0.037        17      77     133 ..     156     206 ..     143     211 .. 0.53

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.062
  Fzo_mitofusin 103 farlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLek 154
                    +a++++q+de  ++le  i++ +++ + l++  k+a +l  +   l++++++
     KIR64462.1  57 VAEIERQIDEDWNKLEPIIERHNATRQDLAAKRKQADALAARIGPLQRQVDE 108
                    5677888888888888888888888888888888888888888888888776 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.037
  Fzo_mitofusin  77 tekLrlivsltsa.ncshqvqqelsstfarlcqqvdetekeleeeikelekeieklee 133
                    ++ ++++v+l  + + ++q   e+   + r ++q    +k++++ei++l+       +
     KIR64462.1 156 QHDVQAVVDLRDElAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQ-------K 206
                    44555555554331344555555555555555555555555555555554.......3 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.37   1.7e+02      59     115 ..      58     113 ..      49     135 .. 0.53
   2 ?    5.9   2.2     0.027        12      33      91 ..     142     205 ..     127     208 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.37
  Baculo_PEP_C  59 aeldtrldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNinstLnnllqal 115
                   ae+++++d+  ++L+  + + + + r++L +  ++   L++ ++ ++  +   l+ +
    KIR64462.1  58 AEIERQIDEDWNKLEPIIERHN-ATRQDLAAKRKQADALAARIGPLQRQVDEALKKV 113
                   4444444444444444444443.3344444444444444444444444444444444 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.027
  Baculo_PEP_C  33 laqlatlldaietqLnalse..dlksllaeldtrldtlltnLtdalnalq...dtlrneLtnln 91 
                   ++ql+ l    ++q +++++  dl++ la+ ++ ld+++++Lt++ ++l+   ++++ e++ l+
    KIR64462.1 142 MGQLELLDRFAQRQQHDVQAvvDLRDELAAKKQPLDEMVAQLTRTEAQLAakkKQINAEIDRLQ 205
                   5555554444445545544322566667777778999999999999999888888888888776 PP

>> Mce4_CUP1  Cholesterol uptake porter CUP1 of Mce4, putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.042        19      52     110 ..      62     120 ..      49     152 .. 0.89
   2 ?    4.8   1.1     0.036        16      44      99 ..     145     200 ..     133     208 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.042
   Mce4_CUP1  52 pqlredireladladvYadaapdlldaLdnavttsrTiveqqaeLdalllaavglsntg 110
                  q+ ed+++l+ + +  ++  +dl    ++a   ++ i   q+++d++l ++ gl+ ++
  KIR64462.1  62 RQIDEDWNKLEPIIERHNATRQDLAAKRKQADALAARIGPLQRQVDEALKKVGGLAAEA 120
                 4899************************************************9998765 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.036
   Mce4_CUP1  44 LdelNprlpqlredireladladvYadaapdlldaLdnavttsrTiveqqaeLdal 99 
                 L+ l++   + ++d+++++dl d  a+  + l ++++++++t + +++++++++a 
  KIR64462.1 145 LELLDRFAQRQQHDVQAVVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAE 200
                 555666677889****************************************9875 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.7     0.013       5.7      35      64 ..      18      49 ..       9      60 .. 0.74
   2 ?    2.8   0.1      0.32   1.4e+02       9      38 ..     174     203 ..     171     213 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.013
     DUF3040 35 r.arrrslrrlavlavllfvaGllllvlG.va 64
                r  ++ ++r+ +   vl++++G++++++G  +
  KIR64462.1 18 RmPAAPRTRWSRCTTVLAALVGVAVVLTGaPT 49
                234556689999999999*********99433 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.32
     DUF3040   9 rvLeeiEraLaaeDPklaaalrggaararr 38 
                 + L+e+ ++L++++ +laa+ ++ +a++ r
  KIR64462.1 174 QPLDEMVAQLTRTEAQLAAKKKQINAEIDR 203
                 569****************99777776444 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0048       2.1       9      98 ..      33     108 ..      26     125 .. 0.46
   2 ?    3.5   5.6     0.082        37      36      96 ..     151     211 ..     125     216 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0048
        HemX   9 llallvalavgaglyylgqqqvqeltaevaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqlsk 98 
                 +la lv++a    ++  g+  v       a+ +  +a++e q ++   + ++ + ++er +++ ++l+a++k+ ++l++++  lq+q+ +
  KIR64462.1  33 VLAALVGVA----VVLTGAPTV-------AHADPSVAEIERQIDE---DWNKLEPIIERHNATRQDLAAKRKQADALAARIGPLQRQVDE 108
                 455555555....444444444.......3333333333333333...333334444444444444444444444444444444444443 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.082
        HemX  36 evaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqql 96 
                  +++ q++++a+ +  ++++a+k+  +e+ ++l  ++ +l+a++k++++   +l++l+ ++
  KIR64462.1 151 FAQRQQHDVQAVVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQKLRLKV 211
                 3366677777777777777777777777777777777777777777777777777776655 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1       2.2     1e+03      10      43 ..      75     108 ..      59     126 .. 0.67
   2 ?    9.1   0.5    0.0033       1.5      11      61 ..     160     213 ..     150     216 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 2.2
       Spc24  10 akelsdleselesleselaelkeeleeleeesee 43 
                 ++  + + ++l + +++ + l +++  l+++  e
  KIR64462.1  75 IERHNATRQDLAAKRKQADALAARIGPLQRQVDE 108
                 4445556666666666666666666666665554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0033
       Spc24  11 kelsdleselesleselaelkeeleeleeeseekeser...vedetllklklYr 61 
                 +++ dl +el + ++ l+e+ ++l+  e +  +k++++    +  + l+lk+Y 
  KIR64462.1 160 QAVVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQInaeIDRLQKLRLKVYG 213
                 556677888888888888888888888888888665554323333449999996 PP

>> kleA_kleC  Uncharacterized KorC regulated protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.4    0.0072       3.2      20      48 ..      79     107 ..      67     124 .. 0.56
   2 ?    2.5   1.7      0.41   1.8e+02      17      42 ..     160     185 ..     148     200 .. 0.80
   3 ?    1.8   0.4      0.69   3.1e+02      19      49 ..     183     213 ..     176     216 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0072
   kleA_kleC  20 varRdkiAaklaeAeeLvrqaeeLRakvy 48 
                  a R+++Aak ++A+ L  ++  L  +v 
  KIR64462.1  79 NATRQDLAAKRKQADALAARIGPLQRQVD 107
                 44555555555555555554444444433 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.41
   kleA_kleC  17 tdlvarRdkiAaklaeAeeLvrqaee 42 
                 + +v  Rd++Aak +  +e+v q  +
  KIR64462.1 160 QAVVDLRDELAAKKQPLDEMVAQLTR 185
                 556778********999999988654 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.69
   kleA_kleC  19 lvarRdkiAaklaeAeeLvrqaeeLRakvye 49 
                 l+    ++Aak ++ +    + ++LR kvy 
  KIR64462.1 183 LTRTEAQLAAKKKQINAEIDRLQKLRLKVYG 213
                 5555678999999988888889999999986 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.4     0.061        27      18      49 ..      77     108 ..      71     113 .. 0.80
   2 ?    8.1   3.7     0.005       2.2      21      51 ..     175     205 ..     168     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.061
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkd 49 
                 +  +++q++aa+ ++ ++l a++  L+++v++
  KIR64462.1  77 RHNATRQDLAAKRKQADALAARIGPLQRQVDE 108
                 56678899999999999999999888888875 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.005
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  21 qlkqeiaalqaelaklkaeneeLeaevkdLk 51 
                  l++ +a+l+++ a+l a++++ +ae+++L+
  KIR64462.1 175 PLDEMVAQLTRTEAQLAAKKKQINAEIDRLQ 205
                 578899************************6 PP

>> Cortex-I_coil  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.061        27      19      74 ..      58     113 ..      51     119 .. 0.84
   2 ?    4.8   2.8     0.071        32      31      70 ..     165     204 ..     142     210 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.061
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cortex-I_coil  19 aglenslesekvsreelikqkdelesllasleseaaerekrlreleakldealknl 74 
                    a +e+ ++ +    e +i + +  ++ la+ +++a+    r+  l+ ++dealk++
     KIR64462.1  58 AEIERQIDEDWNKLEPIIERHNATRQDLAAKRKQADALAARIGPLQRQVDEALKKV 113
                    5666666666667788889999999999999**********************986 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.071
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cortex-I_coil  31 sreelikqkdelesllasleseaaerekrlreleakldea 70 
                     r+el+ +k+ l++++a l   +a+   + ++++a +d  
     KIR64462.1 165 LRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRL 204
                    599****************999999999999999999864 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   6.6     0.092        41     365     478 ..      62     210 ..      47     216 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.092
      AAA_13 365 esikklvaeineliakhNekvanleeekeeakkklelhlv......................................eeleseldeykkkykklekai 425
                  +i ++ ++++ +i++hN++ ++l++++++a  +l + +                                       +++  +l+ +++  ++ ++++
  KIR64462.1  62 RQIDEDWNKLEPIIERHNATRQDLAAKRKQAD-ALAARIGplqrqvdealkkvgglaaeaykgdnlsvvnallgsrtpSQMMGQLELLDRFAQRQQHDV 159
                 57888888888889999999998888888775.444445466777777777888888777777777777777777777666677766666666666677 PP

      AAA_13 426 eklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLkafGlgeleLk 478
                 + + +  +e +a+++ l+e +++L ++  +     ++in e+ +   ++l Lk
  KIR64462.1 160 QAVVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRL--QKLRLK 210
                 777777777777777777777777777777777777777777776..566555 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.3      0.15        67     216     246 ..      79     109 ..      49     127 .. 0.46
   2 ?    7.4   5.0    0.0038       1.7     178     246 ..     140     207 ..     127     212 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.15
        Spc7 216 eekkkelaelqeqleeleekieelkeqksel 246
                 ++ +++la +++q ++l+++i  l+ q +e+
  KIR64462.1  79 NATRQDLAAKRKQADALAARIGPLQRQVDEA 109
                 2233333333333333333333333333333 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0038
        Spc7 178 eleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqksel 246
                 +++ +le l ++a+  ++ d + +  lr+ela+ k+ ++e  ++l++ ++ql++++++i++  ++ ++l
  KIR64462.1 140 QMMGQLELLDRFAQR-QQHDVQAVVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQKL 207
                 677888888888876.78888889999999999999999888888888888888888888777777665 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.4      0.54   2.4e+02      85     113 ..      80     108 ..      51     125 .. 0.57
   2 ?    9.0   6.1    0.0034       1.5      74     129 ..     153     208 ..     134     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.54
       ATG16  85 qlreelaelyksrgelaqrllelneelqk 113
                 ++r++la+  k+   la r+  l+ ++++
  KIR64462.1  80 ATRQDLAAKRKQADALAARIGPLQRQVDE 108
                 33444444444444444444444433333 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0034
       ATG16  74 akiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaele 129
                 ++ q + q+++ lr+ela+  +   e+  +l++++++l++++++++++  rl++l+
  KIR64462.1 153 QRQQHDVQAVVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQKLR 208
                 466788999****************************************9999997 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2       0.3   1.4e+02      33      71 ..      61      99 ..      51     120 .. 0.48
   2 ?    6.7   4.5      0.02       9.1       9      52 ..     163     206 ..     140     210 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.3
     DUF4200 33 eeelekkeqeleedllkfdkflkendakraralkkaeee 71
                e+++++  ++le  +++ +   ++  akr++a   a++ 
  KIR64462.1 61 ERQIDEDWNKLEPIIERHNATRQDLAAKRKQADALAARI 99
                333334444444444444444444444444444444333 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.02
     DUF4200   9 fevqealeakkeeiqrleealkqreeelekkeqeleedllkfdk 52 
                  ++  +l+akk+ + ++  +l++ e++l +k+++++ ++ +++k
  KIR64462.1 163 VDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQK 206
                 45677899999999999999999999999999999998888776 PP

>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.41   1.8e+02     474     521 ..      62     112 ..      56     135 .. 0.61
   2 ?    8.6   3.9     0.001      0.45     157     221 ..     142     206 ..     125     212 .. 0.85
   3 ?   -2.4   0.0       2.1   9.6e+02     655     678 ..     264     287 ..     263     292 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.41
        HOOK 474 gseeekltelqelledanrrkneLetenrla...nqrileLeaqveelqka 521
                 ++ +e  ++l+  +e  n ++++L  ++++a     ri  L++qv+e  k+
  KIR64462.1  62 RQIDEDWNKLEPIIERHNATRQDLAAKRKQAdalAARIGPLQRQVDEALKK 112
                 455555555666666666666666555554411145666666666665544 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.001
        HOOK 157 eeslgeldsqlrklleelkeaqeekdelaQrcheldkqlsllqeEknaLlaenkklqerlselen 221
                  ++l+ ld+  ++  ++++++++ +dela + + ld+ +++l+   ++L+a +k++++++++l++
  KIR64462.1 142 MGQLELLDRFAQRQQHDVQAVVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQK 206
                 4556667888888999*********************************************9985 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.1
        HOOK 655 LivsAwYnlglalqreavderlaa 678
                 L+ +Aw + g++l ++a ++r  +
  KIR64462.1 264 LMLAAWAKAGVSLPHNAAQQRSVT 287
                 8999***************99865 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2      0.32   1.4e+02      85     126 ..      58      99 ..      49     113 .. 0.59
   2 ?    6.5   3.5     0.025        11      47      92 ..     160     205 ..     137     211 .. 0.47

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.32
      APG6_N  85 aaleeelealeeeeerfwreynelqlelleleeeldsleaqy 126
                 a++e++ ++  ++ e  ++++n+ + +l+ + ++ d+l+a++
  KIR64462.1  58 AEIERQIDEDWNKLEPIIERHNATRQDLAAKRKQADALAARI 99 
                 445555555555555555566666666666666666666555 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.025
      APG6_N  47 eeleeleeeleklekeeeelleeLkelekereeleaelaaleeele 92 
                 + + +l++el++ ++  +e++++L ++e++ ++ +++++a    l+
  KIR64462.1 160 QAVVDLRDELAAKKQPLDEMVAQLTRTEAQLAAKKKQINAEIDRLQ 205
                 2333444444444444444444444444444444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1126  (0.0628033); expected 358.6 (0.02)
Passed bias filter:                      776  (0.0432818); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              40  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.42
# Mc/sec: 2459.81
//
Query:       KIR64463.1  [L=192]
Description: deoxycytidine triphosphate deaminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-12   46.1   0.0    4.1e-07   29.1   0.0    2.1  2  DCD       2'-deoxycytidine 5'-triphosphate deaminase (DCD)
      2e-10   40.4   0.0    2.7e-10   40.0   0.0    1.2  1  dUTPase   dUTPase


Domain annotation for each model (and alignments):
>> DCD  2'-deoxycytidine 5'-triphosphate deaminase (DCD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   4.6e-11   4.1e-07       5     116 ..       3     112 ..       1     115 [. 0.85
   2 !   16.1   0.0   4.2e-07    0.0037     286     353 ..     114     175 ..     108     177 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 4.6e-11
         DCD   5 lpdqeiealieegaikaeepleeeqiqPaslDLrLgkkayrvrasFlpgkgekvaekleelklheldLtegavlekgcvYivplleslaLpadlsaaan 103
                 l+d+++ a +++g++ a ep+e + +qP+s+D+rL  k +rv    l  + +   ++ +  ++ e+   e  vl  g   ++  le ++L ++l+++ +
  KIR64463.1   3 LSDRDLVAELKAGTL-ALEPFEPTLVQPSSIDVRLD-KLFRVFNNHLYTHIDPSVQQDDLTSMIEVPDGEPFVLHPGEFVLASTLEVISLGDQLAGRLE 99 
                 677777777888888.6689***************7.57***999998766555555566677888888889*************************** PP

         DCD 104 pksstGRlDvftR 116
                  kss GRl ++t 
  KIR64463.1 100 GKSSLGRLGLLTH 112
                 ********99985 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 4.2e-07
         DCD 286 YaGffDpGFGlaeaggegsravLevR.srevPFiledgqivgrlvyermaekpealYGeel.gsnYqgqg 353
                  aGf+DpGF  +        + Le+    + P  l  g  +g+l   r+++ +e+ YG+++ gs Yqgq+
  KIR64463.1 114 TAGFIDPGFTGH--------VTLELSnVANLPITLWPGMKIGQLCIFRLSSPAEHPYGSAVyGSRYQGQR 175
                 59*******643........45666414689***************************98637*****96 PP

>> dUTPase  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0     3e-14   2.7e-10      21     126 ..      69     178 ..      55     181 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 3e-14
                 SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEE..EEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBECGEEEEE.SST. CS
     dUTPase  21 akdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvp..gvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifariltaeleev.etl. 115
                  +++++ pge vl +t   i l d+la+++ ++S+l ++gl+ +   g id  ++G+v + l n  + ++++  g +i qL + r+  +  +++ +++ 
  KIR64463.1  69 GEPFVLHPGEFVLASTLEVISLGDQLAGRLEGKSSLGRLGLLTHStaGFIDPGFTGHVTLELSNVANLPITLWPGMKIGQLCIFRLSSPAEHPYgSAVy 167
                 578999*************************************9999**********************************999999955555414456 PP

                 TTESSBTTXTT CS
     dUTPase 116 katergeggfg 126
                  ++++g++g +
  KIR64463.1 168 GSRYQGQRGPT 178
                 67777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1475.61
//
Query:       KIR64464.1  [L=201]
Description: pyridoxamine 5'-phosphate oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-05   24.6   0.0    4.6e-05   23.5   0.0    1.5  1  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.6e-09   4.6e-05      12      87 ..      27     100 ..      14     101 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.6e-09
                     SSEEEEEEEETTSEEEEEEEEEEEETTTTEEEEEEETTSHHHHHHHHH-EEEEEEEETT.GSEEEEEEEEEEEESCH CS
  Putative_PNPOx  12 skavvlATvdedGrPnvspvllkagdgrdgivfatnadsrklrnleenprvallfldde.lgrgvrieGtaelvsdg 87 
                     + ++ lATv++dG P v pv+ +  d+  ++ f    ds k r+le++ r al  + +e ++    + G a+ v+d+
      KIR64464.1  27 PGFGYLATVRADGGPRVHPVSPVITDEG-LFCFV--VDSPKRRDLERDGRYALHSFPPEdSDDEAYVAGHARPVTDQ 100
                     67899******************88888.89999..68999************999999988888889999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1488.59
//
Query:       KIR64465.1  [L=327]
Description: metalloprotease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-18   64.6   0.4    1.7e-17   63.8   0.1    1.5  2  Peptidase_M43  Pregnancy-associated plasma protein-A
    0.00023   21.7   0.9        0.1   13.1   0.3    2.9  2  Reprolysin_3   Metallo-peptidase family M12B Reprolysin-like
     0.0098   16.1   4.3      0.073   13.2   4.2    2.2  1  Reprolysin_5   Metallo-peptidase family M12
  ------ inclusion threshold ------
       0.23   11.1   3.2       0.97    9.0   1.8    2.4  2  Reprolysin_4   Metallo-peptidase family M12B Reprolysin-like


Domain annotation for each model (and alignments):
>> Peptidase_M43  Pregnancy-associated plasma protein-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.2   9.8e+03      29      52 ..     117     137 ..     110     150 .. 0.60
   2 !   63.8   0.1   3.7e-21   1.7e-17      59     149 ..     227     319 ..     189     322 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.2
  Peptidase_M43  29 GltknsGvawyPdsGmsadgvarv 52 
                     +t+++G  + Pds m +++++ +
     KIR64465.1 117 DSTRAGG--NIPDS-MINSQISVL 137
                    4555555..56777.766666644 PP

  == domain 2  score: 63.8 bits;  conditional E-value: 3.7e-21
  Peptidase_M43  59 laa.dststnksstLthelGhfLgLihtfeggCerGegDkvsDtpsedgkevsavnkdllnCngetin.sqnfmdyng..vrasftqdqvdrmve 149
                    l   ++t+ n+  t the+Gh+L+L htf+ggC  G+gD vsDtp+e +    ++ ++  +C    +   +nfmdy+   +  +ft +q  rm  
     KIR64465.1 227 LPGgTATNYNQGDTGTHEVGHWLNLYHTFQGGC-SGSGDSVSDTPAEAS-PAYQCPTGRDTCTATGLDpITNFMDYTYdsCMYQFTAGQAARMLT 319
                    4333888999999********************.899**********55.556677777789988886479****975559999*********75 PP

>> Reprolysin_3  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0046        21      53      88 ..      71     106 ..      47     124 .. 0.77
   2 !   13.1   0.3   2.3e-05       0.1       4     124 .]     130     254 ..     127     254 .. 0.50

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0046
  Reprolysin_3  53 vtaeaergqagyDlvhlftarde.sgvgGlAyvgsvc 88 
                   +ta++  ++ ++Dl++++++r++ + ++G A + +v+
    KIR64465.1  71 LTAKE-TREREADLAAALRERANfRAGAGAAALATVT 106
                   34444.6899**********99999999999986654 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.3e-05
  Reprolysin_3   4 iaalvnranqiyerdlg.....irlqlvaiiitdkas.dpytkkdatealdelaevtaeaergqagyDlvhlftardesgvgGlAyvgsvcnsskk. 93 
                   i++ +++ nq+y    g      ++ql++i  ++++   p ++ ++  a ++++++ +e   ++ ++ l+ l       + +G A +      s   
    KIR64465.1 130 INSQISVLNQAYSGATGgaataFSFQLQKINRVTNPAwFPIVQGSS--AERSMKTSLREGGKNTLNIYLGELSD-----DLLGWATFPKRRLDSMDg 219
                   6777777777777444457766777777777777765333343322..22222333333312333333333322.....467787773333333332 PP

  Reprolysin_3  94 agvnsgssvlgkvga.....dtvaHEiGHnfganHt 124
                   + v ++s   g +       dt +HE+GH + ++Ht
    KIR64465.1 220 VVVLTES-LPGGTATnynqgDTGTHEVGHWLNLYHT 254
                   2222222.112111123555***************7 PP

>> Reprolysin_5  Metallo-peptidase family M12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   4.2   1.6e-05     0.073     133     179 ..     228     289 ..      39     294 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
  Reprolysin_5 133 nsvvvstatevqvvaHElGHnfGavHDcdsss...............esqsCslsnstepag 179
                     +  ++ ++ ++ +HE+GH ++  H++++ +                 + C+++++t+ a 
    KIR64465.1 228 PGGTATNYNQGDTGTHEVGHWLNLYHTFQGGCsgsgdsvsdtpaeasPAYQCPTGRDTCTAT 289
                   55666677888999***************988888888888777776666677777777766 PP

>> Reprolysin_4  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.077   3.5e+02      72     116 ..      60     105 ..      46     123 .. 0.73
   2 ?    9.0   1.8   0.00022      0.97     130     165 ..     232     267 ..     100     290 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.077
  Reprolysin_4  72 gedlgnsslatltst.rdskdyDlaallrdtrasqqn.vgvawvgal 116
                   +++  +   + lt++   ++++Dlaa lr+  a+  +  g+a++  +
    KIR64465.1  60 AGAHAKHEPNELTAKeTREREADLAAALRER-ANFRAgAGAAALATV 105
                   5555666667777541567899*****9998.665554888888765 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00022
  Reprolysin_4 130 aasrdeydifAHEiGHtfGaaHdlsdegeglsskte 165
                   a   ++ d+  HE+GH + + H+ + ++ g   ++ 
    KIR64465.1 232 ATNYNQGDTGTHEVGHWLNLYHTFQGGCSGSGDSVS 267
                   33234448899**************99998866554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2224.32
//
Query:       KIR64466.1  [L=398]
Description: integrase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-18   65.2   0.0      1e-17   64.5   0.0    1.3  1  Phage_integrase  Phage integrase family
    2.4e-07   30.9   0.0    4.4e-07   30.1   0.0    1.5  1  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
     0.0088   16.4   0.0      0.016   15.5   0.0    1.4  1  Phage_int_SAM_5  Phage integrase SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0   1.7e-21     1e-17       2     171 ..     176     354 ..     175     355 .. 0.88

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 1.7e-21
                      HHHHHHHHHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEE.............EEECSSSSEEEEECTHHHHHHHHH CS
  Phage_integrase   2 vltedeverllaaleeslkirdklllellyetGlRisEllsLrvkdldlengvilvh.............eregKgskeravplseealellke 82 
                      vlt  +v +l ++++     r ++l+ +     lR +E+ +L+ +d+d+  g+i++                 + +   r+v+l+ +++e++++
       KIR64466.1 176 VLTLAQVFKLADIVPP----RYRALVLVTTFGCLRWGEVSALQRQDIDTTAGTIRIRqayteqrgvglvlGPPKSRAGRRTVTLPPAVVEVVRD 265
                      6888899999999999....************************************86766666666665333334444*************** PP

                      HHHHHCHCCTTTSBSSBETTSSB--HHHHHHH..HHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCCH CS
  Phage_integrase  83 llskaleeaeksellfaskrgkplsrqtvrka..fkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthvak 171
                       l+ + + + ++ ++f  + g+p+ r +++k+  +k+ v + g   +l++H+lRh+  t  ++ g+++r ++  +GH s +   iY h+++
       KIR64466.1 266 HLAAE-VDDHPDAFVFTTESGRPIWRGNLNKIiaWKASVSRIGQP-NLHFHDLRHTGNTLAARTGASTRDLMARMGHDSPQAALIYQHATA 354
                      *****.999999*******************72256777776666.******************************************975 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   7.4e-11   4.4e-07       3      58 .]      72     126 ..      59     126 .. 0.96

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 7.4e-11
                      HHHHHHHHHHHHHHH-HHHHHHHHHHHTTTHHHHTTSSBGGG--HHHHHHHHHHH. CS
  Phage_int_SAM_3   3 sefleeWleeykprvkesTyatyksiiknhIlPyFgniklkkItpadiqkfqnell 58 
                       +++  W+e+ +p+++++T++ y   +++hI+Py+g   l  + + +++++  ell
       KIR64466.1  72 DDYARRWIEQ-RPNLRPRTVHLYGWLLEKHIVPYLGGTELGRLDTPMVRDWRAELL 126
                      68999*****.*****************************************9985 PP

>> Phage_int_SAM_5  Phage integrase SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.7e-06     0.016       4      93 ..      73     160 ..      70     168 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.7e-06
                      HHHHHHTHHHHTTS-HHHHHHHHHHH.HHTTTS-..S---TTT--HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHT.TS--S-H CS
  Phage_int_SAM_5   4 dyfkeyiekkkkkgskgtlrnykstl.khlkkFlkkkditfeeidkefleeFedYLkkkkglsentiskyfkklkavlnkAike.gilkknp 93 
                      dy++ +ie++ + + + t++ y  +l kh+  +l     ++  +d+ ++++ ++ L  ++g+s + ++k ++ l+avl  A+ke +il++np
       KIR64466.1  73 DYARRWIEQRPNLR-PRTVHLYGWLLeKHIVPYL--GGTELGRLDTPMVRDWRAEL-LGNGVSVSMAAKAYRLLRAVLMTAVKEdQILTRNP 160
                      78899999998775.8888888765438999999..899*****************.9*************************956778888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 3304.41
//
Query:       KIR64467.1  [L=619]
Description: replication initiation protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        2.5    9.0   7.4       0.21   12.4   1.8    2.2  2  LZ_Tnp_IS66  Transposase C of IS166 homeodomain


Domain annotation for each model (and alignments):
>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.3         1   1.8e+04      47      61 ..      17      31 ..       7      33 .. 0.55
   2 ?   12.4   1.8   1.2e-05      0.21      26      69 .]     113     201 ..     107     201 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1
  LZ_Tnp_IS66 47 pkskkrkkrgRkpLp 61
                 +++++  +  R +Lp
   KIR64467.1 17 AAPRPGSRAARMALP 31
                 234455555677776 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 1.2e-05
  LZ_Tnp_IS66  26 eQleL.....................aleeleaeeaeveak........................apkskkrkkrgRkpLpahLPReev 69 
                  +Q +L                     ++e+l++++ eve++                           ++++++++R++  ++LPR+ v
   KIR64467.1 113 AQKSLilfrahlefsrdeasracqwdQVEDLDEAIREVEEAiaaeglrgrvgpphtstdddqgddDTGRRRKRSTKRRQDAPDLPRRKV 201
                  555666666666667777777777778899999999998889999999999**********99975556666667799999*****976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.38
# Mc/sec: 4827.74
//
Query:       KIR64468.1  [L=63]
Description: hypothetical protein TK50_01990 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 498.38
//
Query:       KIR64469.1  [L=84]
Description: hypothetical protein TK50_01995 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       209  (0.0116571); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 654.67
//
Query:       KIR64470.1  [L=133]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 961.31
//
Query:       KIR64471.1  [L=103]
Description: hypothetical protein TK50_02010 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 721.23
//
Query:       KIR64472.1  [L=257]
Description: glycosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-10   40.0   0.0    7.5e-10   38.9   0.0    1.5  2  Glycos_transf_2  Glycosyl transferase family 2
    1.5e-05   25.0   0.0    3.2e-05   23.9   0.0    1.5  2  Glyco_tranf_2_3  Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   8.4e-14   7.5e-10       1     109 [.       6     112 ..       6     126 .. 0.91
   2 ?   -2.5   0.0      0.43   3.8e+03     134     162 ..     194     222 ..     176     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 8.4e-14
                      EEEEEESS-.TTTHHHHHHHHHHH..GGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEE CS
  Glycos_transf_2   1 svviptyNe.ektlletlesllaq..dpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDde 91 
                      sv++p++    ++l+ ++esl++q  +p  d++ +v  Dg    t +++++l + dpr+ + +     G++ a+  +l+++ g++i +lDaDd+
       KIR64472.1   6 SVITPVHAPsIEYLAGAYESLAKQdmPPGWDWQWLVQEDGQ---TGALVDALPD-DPRISLGTGR-PGGPGVARTLALSRVAGQLIKVLDADDQ 94 
                      8****************************************...8888888854.7888888877.55************************** PP

                      E-TTHHHHHHHHHHH.TT CS
  Glycos_transf_2  92 pdpdwleklvealekdga 109
                       +p+ l + ++a+++++ 
       KIR64472.1  95 LTPGALARDIAAFDAHPQ 112
                      *************99875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.43
                      EEECCHCCCCHCCCCCCSTTCSTCCCEEE CS
  Glycos_transf_2 134 enerlyfkerkrslkgnlsfeigsaallr 162
                        + +yf+++ + l++++++ + s+a+ r
       KIR64472.1 194 AVSEGYFTREYGLLYRKWPGQVTSQAAHR 222
                      56788999999999999999999988844 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   3.6e-09   3.2e-05      60     188 ..      59     186 ..       7     201 .. 0.79
   2 ?   -2.5   0.0      0.41   3.7e+03     131     159 ..     214     242 ..     202     248 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 3.6e-09
  Glyco_tranf_2_3  60 rvrvvvnarnlgstgksralnealravksdlvllvDdDtvvePdtlkrllqff.ltpkvgavgtpvfllnrstlvsalgalefaerhl...rfl 149
                      r+++  + r +g++++++    al++v+++l+ ++D+D+ + P++l+r  ++f ++p++g  + +v+ l ++  ++ ++++ +a   +    +l
       KIR64472.1  59 RISL-GTGRPGGPGVART---LALSRVAGQLIKVLDADDQLTPGALARDIAAFdAHPQIGWTTSRVLDLLPDGSTAGWDKD-PAGGIIdrgAVL 147
                      5553.2235557777766...99******************************9999***999888777777777777774.343333222689 PP

  Glyco_tranf_2_3 150 aarralgv.ltlnGsgslirrevlkelegldplflltdDy 188
                      ++++a +  + +++++++ rr+++ +l+g+++     +D 
       KIR64472.1 148 SFWQANDYrASVHPATLCLRRDLVFALGGWMA-LPASEDT 186
                      999999966999****************9999.7777776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.41
  Glyco_tranf_2_3 131 tlvsalgalefaerhlrflaarralgvlt 159
                       ++s++   e+ae ++r++    +  +lt
       KIR64472.1 214 QVTSQAAHREPAEYQARMRIIEARAHALT 242
                      45677777788888888887775554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1961.43
//
Query:       KIR64473.1  [L=273]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-21   75.0   0.2    1.1e-20   73.9   0.2    1.5  1  UTRA       UTRA domain
    2.1e-20   72.1   1.7    2.1e-20   72.1   0.5    1.7  2  GntR       Bacterial regulatory proteins, gntR family
    3.1e-05   23.8   0.1    8.8e-05   22.4   0.1    1.7  1  HTH_11     HTH domain
    0.00014   21.6   0.1    0.00026   20.7   0.1    1.4  1  HTH_IclR   IclR helix-turn-helix domain
    0.00015   21.7   0.1    0.00029   20.8   0.1    1.5  1  HTH_Crp_2  Crp-like helix-turn-helix domain
    0.00031   20.5   0.0    0.00061   19.6   0.0    1.4  1  TrmB       Sugar-specific transcriptional regulator TrmB
     0.0014   18.4   0.3     0.0039   17.1   0.3    1.8  1  MarR_2     MarR family
     0.0052   17.1   0.0     0.0096   16.3   0.0    1.4  1  Rrf2       Transcriptional regulator
  ------ inclusion threshold ------
      0.011   15.3   0.1      0.021   14.4   0.1    1.5  1  HTH_24     Winged helix-turn-helix DNA-binding
      0.018   15.1   0.2      0.047   13.7   0.2    1.7  1  HTH_29     Winged helix-turn helix
      0.027   14.5   0.1      0.061   13.4   0.1    1.7  1  HTH_20     Helix-turn-helix domain
      0.031   14.2   0.0      0.059   13.3   0.0    1.4  1  HTH_36     Helix-turn-helix domain
       0.16   11.5   0.0       0.29   10.7   0.0    1.3  1  HTH_CodY   CodY helix-turn-helix domain


Domain annotation for each model (and alignments):
>> UTRA  UTRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.2   7.9e-24   1.1e-20      12     140 ..     126     260 ..     124     261 .. 0.86

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 7.9e-24
                 EEEEEE--HHHHHHHTS-TTSEEEEEEEEEEE..TTEEEEEEEEEEEGGGT...TTCH..HHHHH...CS-HHHHHHHHHTTSEEEEEEEEEEEE--HH CS
        UTRA  12 sleevpasaeiaeaLglpagepvlrieRlrla..dgepvaleesylpaslv...pdll..eedle...egslyayleerlgvpitraeetiearladae 100
                 ++++v a+a++a+aL+++ag+p+lr +       ++ p+ +  sylp++lv   pdll  +   e   +g+ ++++    g++++r + +i+ar ++++
  KIR64473.1 126 EYTRVDADADMAAALQVEAGTPLLRRVYWTSSrhENAPLTVSYSYLPYDLVaanPDLLdaS--KEpwpGGTQHQLYTL--GIELDRIDDEIRARPPSPD 220
                 57899******************9766554335599*************883334454442..225568899999966..******************* PP

                 HHHHHTSTTT-EEEEEEEEEEETTSCEEEEEEEEEETTTE CS
        UTRA 101 eaelLgisagspvLviervtydadgrpveysrsyyrgdrf 140
                 eaelL+i++g  vL++++++ d +gr+ve++  +++gdr 
  KIR64473.1 221 EAELLDIDPGVSVLTVRKTSVDTTGRVVEVADVVMPGDRT 260
                 **************************************96 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.5   1.5e-23   2.1e-20       2      64 .]      13      75 ..      12      75 .. 0.98
   2 ?   -3.9   0.0       8.3   1.1e+04      35      43 ..     230     238 ..     228     238 .. 0.86

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 1.5e-23
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                y q++e+Lr++I+sgel+pG+ +Pse eLa+  g srt+vR A+r+L ++glv ++qgrGt+V
  KIR64473.1 13 YLQLAEELRAKIVSGELAPGTLMPSETELADTSGLSRTSVRNAIRQLREWGLVRAEQGRGTYV 75
                889***********************************************************9 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 8.3
                 TS-HHHHHH CS
        GntR  35 gVsrttvRe 43 
                 gVs  tvR+
  KIR64473.1 230 GVSVLTVRK 238
                 899999996 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   6.4e-08   8.8e-05      19      53 ..      39      72 ..      37      74 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 6.4e-08
      HTH_11 19 eeLAeeLnvSrrtvrrdIkaLeelgvpIesepgrG 53
                 eLA+  ++Sr+ vr+ I++L+e+g  + +e+grG
  KIR64473.1 39 TELADTSGLSRTSVRNAIRQLREWG-LVRAEQGRG 72
                69***********************.9******98 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   1.9e-07   0.00026      22      50 ..      39      67 ..      28      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.9e-07
                HHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR 22 selArrtglpkStvhRlLqtLvelGyveq 50
                +elA+ +gl++++v++ ++ L e+G+v+ 
  KIR64473.1 39 TELADTSGLSRTSVRNAIRQLREWGLVRA 67
                9**************************95 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   2.1e-07   0.00029      19      57 ..      33      73 ..      12      80 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.1e-07
                EEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE..ETEEE CS
   HTH_Crp_2 19 elpltqeelAsmlGltretvsrilseLkreglis..rgrri 57
                +l  + +elA+  Gl+r +v  ++++L++ gl++  +gr+ 
  KIR64473.1 33 TLMPSETELADTSGLSRTSVRNAIRQLREWGLVRaeQGRGT 73
                5778999***************************7435434 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.4e-07   0.00061      26      63 ..      39      76 ..      36      82 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.4e-07
                CHHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTTTEEE CS
        TrmB 26 deiaeelgvprskvYevLrsLedkGlVerekgrpklYr 63
                +e+a  +g++r++v +++r+L + GlV+ e+gr ++ r
  KIR64473.1 39 TELADTSGLSRTSVRNAIRQLREWGLVRAEQGRGTYVR 76
                799****************************9955544 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.3   2.8e-06    0.0039      25      56 ..      39      70 ..      30      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.8e-06
                HHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 25 gelarrlglsksavsrilkrLvaaGLverrpg 56
                +ela++ gls+ +v ++++ L + GLv+ + g
  KIR64473.1 39 TELADTSGLSRTSVRNAIRQLREWGLVRAEQG 70
                69*************************97754 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.9e-06    0.0096      28      65 ..      38      74 ..      28      80 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.9e-06
                HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCE CS
        Rrf2 28 seeiaerqnispsylekilakLrkaglvksvrGkgGGy 65
                 +e+a+  ++s++ ++  +++Lr+ glv++++G+ G y
  KIR64473.1 38 ETELADTSGLSRTSVRNAIRQLREWGLVRAEQGR-GTY 74
                579******************************9.555 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.5e-05     0.021      21      48 .]      39      66 ..      37      66 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-05
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGlIk 48
                +eLA+ +glS++ v+  +++L e Gl++
  KIR64473.1 39 TELADTSGLSRTSVRNAIRQLREWGLVR 66
                79********************988885 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   3.4e-05     0.047      17      54 ..      40      73 ..      34      82 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.4e-05
      HTH_29 17 qiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrpr 54
                ++A   glsr++v+++++  +e+G   l +  ++gr+ 
  KIR64473.1 40 ELADTSGLSRTSVRNAIRQLREWG---LVR-AEQGRGT 73
                789999******************...554.5667764 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   4.4e-05     0.061      26      56 ..      37      67 ..      16      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.4e-05
                -HHHHHHHHTS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 26 taselaerldlskntlsyHLrvLeeagLvev 56
                + +ela++ +ls++++++ +r+L+e gLv+ 
  KIR64473.1 37 SETELADTSGLSRTSVRNAIRQLREWGLVRA 67
                689**************************86 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.3e-05     0.059      26      54 ..      36      64 ..      31      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.3e-05
      HTH_36 26 psqetlakrlglsknTvsraikeLeqlGy 54
                ps   la  +gls+ +v++ai+ L++ G+
  KIR64473.1 36 PSETELADTSGLSRTSVRNAIRQLREWGL 64
                77789********************9987 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00021      0.29       9      47 ..      40      76 ..      31      85 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00021
    HTH_CodY  9 kiaDriGitrsvivnaLrkLesaGiiesrsLGmkGtYlk 47
                ++aD  G+ r  + na+r+L   G++   +   +GtY++
  KIR64473.1 40 ELADTSGLSRTSVRNAIRQLREWGLVR--AEQGRGTYVR 76
                68**********************985..4456888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1869.12
//
Query:       KIR64474.1  [L=113]
Description: hypothetical protein TK50_02030 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 850.28
//
Query:       KIR64475.1  [L=147]
Description: hypothetical protein TK50_02035 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1073.52
//
Query:       KIR64476.1  [L=214]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-05   24.6   0.0    1.6e-05   24.2   0.0    1.1  1  Methyltransf_20  Putative methyltransferase
    5.4e-05   23.8   0.3    8.2e-05   23.2   0.3    1.3  1  Methyltransf_25  Methyltransferase domain
     0.0037   18.0   0.0     0.0052   17.5   0.0    1.2  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
       0.04   13.7   0.0      0.051   13.4   0.0    1.1  1  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_20  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   3.6e-09   1.6e-05     131     253 ..      40     160 ..      24     166 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3.6e-09
  Methyltransf_20 131 egrpvrildiaaGhGryvldalekaeer.vesillrdyselnveqGraliaekglediarfekgdafdeeslaalePrptlaivsGlyelfpdn 223
                       ++p+ ++   aG G  ++ al+  ++     ++l +y + nv++ ra +a  gl+++  ++++da   +s a   P+ +l +++G++    d 
       KIR64476.1  40 PDEPLAVVSACAGQGHDLVGALAGRADAaRVRATLLEYDPGNVAAARAAAAGAGLANV-DIRRADAGRLSSYAQAVPA-DLVLMAGVFGNVDD- 130
                      478999****************9765542778999**********************9.9***********9999996.899******98755. PP

  Methyltransf_20 224 dlvkrslaGlaeavepgglliytgqpWhPq 253
                      + v+r++a l +    g+ +i+t     P 
       KIR64476.1 131 HDVRRTVAALPQLCAAGATVIWTRTRRAPD 160
                      569*******************98777666 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.3   1.8e-08   8.2e-05       1      92 [.      46     143 ..      46     147 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.8e-08
                      EEEET-TTSHHH.HHHHCTS.T.SSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBS..SSTTTEEEEEEESTGGGSSHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrlt.lalakrl.g.kakvtgvDiseemleaareraeeegl.nvefvqgdaedlp..fedgsfDlvvssgalhhlsdedlekalke 88 
                      v+ +++G+G+++  ala r    + + t ++++++ ++aar+ a+ +gl nv+++++da +l+   ++   Dlv+++g++  ++d+d++++++ 
       KIR64476.1  46 VVSACAGQGHDLvGALAGRAdAaRVRATLLEYDPGNVAAARAAAAGAGLaNVDIRRADAGRLSsyAQAVPADLVLMAGVFGNVDDHDVRRTVAA 139
                      567789999755256777765247899*****************99999**********99984346669******999*********999987 PP

                      HHHH CS
  Methyltransf_25  89 iarv 92 
                      + ++
       KIR64476.1 140 LPQL 143
                      7655 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.2e-06    0.0052      12      97 ..      58     148 ..      49     150 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.2e-06
  Methyltransf_12  12 rallekl...pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldnirklLkpgG 97 
                         l+      +++ t ++++p  +++a++  a  +  n++  + +a  l++ ++    Dlv++++v+ ++   d+r++++ + +l++ g+
       KIR64476.1  58 VGALAGRadaARVRATLLEYDPGNVAAARAAAAGAGLANVDIRRADAGRLSSYAQAVPADLVLMAGVFGNVddHDVRRTVAALPQLCAAGA 148
                      444444445569999**********9999999999988888888888888888888***************99999999999999998886 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.1e-05     0.051      11      94 ..      50     140 ..      40     151 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.1e-05
  Methyltransf_31  11 GCGtGeltfelae..elgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl.....naladpdkil 94 
                       +G+G+++  +        + + +++++++  +  Ar+ a+  gl nv  +++d+  l++  +  + Dl+l  +v+     +++    ++l
       KIR64476.1  50 CAGQGHDLVGALAgrADAARVRATLLEYDPGNVAAARAAAAGAGLANVDIRRADAGRLSSYAQAVPADLVLMAGVFgnvddHDVRRTVAAL 140
                      567887776555323333355699*********************************996455599******9999877775555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1558.55
//
Query:       KIR64477.1  [L=119]
Description: DoxX family protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-20   72.5  15.3      3e-20   72.3  15.3    1.0  1  DoxX_2    DoxX-like family
  ------ inclusion threshold ------
        0.3   11.7  18.2       0.85   10.3  17.9    1.9  1  DoxX      DoxX


Domain annotation for each model (and alignments):
>> DoxX_2  DoxX-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3  15.3   3.3e-24     3e-20       2     103 .]       8     114 ..       7     114 .. 0.90

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 3.3e-24
      DoxX_2   2 ltvllalffllsGvakllraeevvakfaqlg...fpssfvrllGvvellgalgLllp.lvt.aprltplAavglallmvgAiathlrrgdpkavalpav 95 
                 ++++lal+f++sG+ak ++++e + + +q+    +p+ ++r+++++e+l+a+gLllp l++ a++ltplAa+gl ++mvgA   hlr ++p av++++ 
  KIR64477.1   8 AQAVLALIFAFSGLAKGTWSRERLLAGGQTSariVPMPLLRTVAALEVLAAVGLLLPgLTGiATWLTPLAAAGLGVVMVGATGIHLRLREPVAVLVNLT 106
                 699*****************98875555543257***********************854458************************************ PP

      DoxX_2  96 llalalav 103
                 +la +++v
  KIR64477.1 107 ILATCVFV 114
                 ***99876 PP

>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  17.9   9.4e-05      0.85       4      80 ..       7      89 ..       4     116 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.4e-05
        DoxX  4 llRlllgvlfiahGlqkltg.....fgleg..taaslaalglpppella.ylaalvElvgglllllGlltRlaAlalavtllvat 80
                ++  +l+++f  +Gl k t      +   g  t+a +++++l+ ++ ++ +laa++ l+ gl  +   lt+laA++l v++++at
  KIR64477.1  7 AAQAVLALIFAFSGLAKGTWsrerlLA--GgqTSARIVPMPLLRTVAALeVLAAVGLLLPGLTGIATWLTPLAAAGLGVVMVGAT 89
                566799*************54443322..122444555555544433331344444444444444456677*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 891.82
//
Query:       KIR64478.1  [L=303]
Description: luciferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-48  165.0   6.4    2.7e-48  165.0   6.4    1.3  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.0   6.4   1.5e-52   2.7e-48       2     226 ..       2     232 ..       1     244 [. 0.91

  Alignments for each domain:
  == domain 1  score: 165.0 bits;  conditional E-value: 1.5e-52
  Bac_luciferase   2 efgvflptrqggalgaasaslrylvelaraaEelGfdavwvaehhggpgga.....ldaftllaalaaaTerirlgtavtplytrhPavlAqqaa 91 
                     ++g++++  q         ++ + ++  r+aEe+Gfd +w+ +h+g ++       +d++t+l+a+a +T+rirlgt v  +  rhPa+ A+q+ 
      KIR64478.1   2 RIGIVILPDQ---------RWSQSRRRWRQAEEWGFDHAWTYDHLG-WRDLvdgpwFDSMTTLTAAATVTSRIRLGTLVASPNFRHPAAFARQIT 86 
                     5555555555.........79999*********************8.55556***************************99999*********** PP

  Bac_luciferase  92 tLdhlsgGRfglglgtggpaveerrfGv...dhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgp.iPvyvaaaspaglela 182
                      Ld++sgGRf lg+g+gg   + +  G    + ++r++rl+Efve+l  ++r++  +++G++f + +a++ p  +q+p +P ++aa +p++++l 
      KIR64478.1  87 ALDDVSGGRFLLGVGAGGIGFDSAVLGGetlPPRQRVDRLAEFVELLDLILREDGTTWRGDWFAAVDARNNPGCVQTPrVPFVMAANGPRSMRLV 181
                     ******************99999999999**********************88888********************9999*************** PP

  Bac_luciferase 183 arhadglllag.......eppeeaaelierlragaaeagrdpadirvgisl 226
                     ar+++g++++g       +    +a+l  r++ + aeagrdpa+++ ++sl
      KIR64478.1 182 ARFGQGWVTTGtggddveQWWGTVADLTTRMDRALAEAGRDPATLDRYLSL 232
                     ***********8775555555678888999999**********99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2036.76
//
Query:       KIR64479.1  [L=133]
Description: hypothetical protein TK50_02055 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-16   58.9   0.0    7.2e-16   58.7   0.0    1.0  1  ASCH      ASCH domain


Domain annotation for each model (and alignments):
>> ASCH  ASCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0     4e-20   7.2e-16       3     106 ..      19     129 ..      12     130 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 4e-20
                 E-TTHHHHHHTTS--EE......EESSTTTGGGT-CEEEEEECCCCTSEEEEEEEEEEEEEEHHHHHHHHHCHCC--...-HCHHHHHHHCCHHHHHCC CS
        ASCH   3 fhqelaslivsGkKtae......irvwdeelpkvrgdllilaalkptgralgivevtkvevkpfeevteehalkege...sleewrevheefyeeesee 92 
                 ++++l sl+++G Kta+      +  ++eel+ v  +l ++   +  + ++g+vevt+v v++f ev  ++a  ege   s+eewr+ h  ++++   +
  KIR64479.1  19 LRARLNSLVLAGAKTATagltdeYAEEGEELEHVGERLALV---DDHDAPVGVVEVTGVDVVRFAEVPWDFARSEGEgdrSIEEWRAGHAAYWARVGTP 114
                 567799***************************96666666...779***********************************************99777 PP

                 .EEEEEEEEEEEEEE CS
        ASCH  93 .yedelvvveefelv 106
                  ++d  +v+ +f+lv
  KIR64479.1 115 vTDDSQIVCVRFRLV 129
                 ************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       199  (0.0110993); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1000.32
//
Query:       KIR64480.1  [L=177]
Description: hypothetical protein TK50_02060 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       159  (0.00886831); expected 358.6 (0.02)
Passed bias filter:                      130  (0.00725082); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1360.98
//
Query:       KIR64481.1  [L=350]
Description: hypothetical protein TK50_02065 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-23   84.4   0.0      3e-23   82.9   0.0    1.6  1  Questin_oxidase  Questin oxidase-like
  ------ inclusion threshold ------
        1.1    9.5  11.1        1.6    9.0  11.1    1.2  1  Cuticle_3        Pupal cuticle protein C1


Domain annotation for each model (and alignments):
>> Questin_oxidase  Questin oxidase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   3.4e-27     3e-23       1     339 [.      24     326 ..      24     327 .. 0.72

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 3.4e-27
  Questin_oxidase   1 fhNHlpHhllAlyalGAsaeqlqa...aYeena.syqrpaepspekiteenwrdhLgdeeyyrayldFFedeleekgwkevleeylfsnegaee 90 
                      ++NH p+ + Al ++G +ae  ++    Y +   +  r ++p       ++wr  Lgd +   ++l+ F++el+e+ w+++l  +++      +
       KIR64481.1  24 LSNHGPMTVEALARHGHDAEV-HRwldDYLRRLdELPRGLRP------IDDWRAALGDPKRAGDWLAHFDRELRERPWRDILGTWWP------R 104
                      69***************9996.33233588888566677777......589************************************......4 PP

  Questin_oxidase  91 llsrlfggllHPlIhlGyglef........gqpalvaegLAqaavhydsdpse.lls.ae.aass.raessegsslleilerilkderldaaar 172
                      ll+++++g++H++I +G+++ +        + ++ + ++LA++a + ++ p + ll  a+ a ++ +  +     +l  l ri+++    +   
       KIR64481.1 105 LLPGIAAGATHGVIRVGHAVRAlradetspDRRTELGQALAYWAARWQPVPGApLLPaAPpAGEAgQGGEAGVAAALAGLPRIADR--TGG--- 193
                      **********************99999999899999***********877775533323322222221222222555555554443..111... PP

  Questin_oxidase 173 pgnedddkirdgvlkr.....aadeileyanawkvseeedkeeleekleeliwaatllyaaaglkkepkkpkyDFflmHlvTsslalrsllall 261
                               r + l r     +     + ++a +  + + ++e e+ l+el++ a l y+  g++          +l+H+vT+  a+   l++l
       KIR64481.1 194 ---I-----R-ERLGRlpdvpE---WESSLAALR--PARTPAEAERGLAELVHRASLDYLRYGHA-------EPVMLVHAVTAPTAVLRTLPEL 266
                      ...1.....1.12222121112...222222333..22237889****************86643.......347******************* PP

  Questin_oxidase 262 psklspeskarllraywrlvllvyvargrpe.ldldsikeyksaseaelkkgndwktviqrsasaikhdDeHviKlvra 339
                      ++ l+++s   l  a+ +++ ++ v+  +p+ + + ++             g++  +v++   +a+ h DeHv+Kl  a
       KIR64481.1 267 DPGLWAPS---LAAAWSATAAVTAVY-ASPAgVAPPAVAP-----------GTP-AEVFA---RAARHGDEHVVKLADA 326
                      *******8...666666555555555.5666577556632...........344.49999...7889********9876 PP

>> Cuticle_3  Pupal cuticle protein C1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  11.1   0.00017       1.6      54     142 ..     245     332 ..     234     349 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00017
   Cuticle_3  54 aPvpvvtksiyaapaPvvaktayaaP...aPvvaktvyaapavvvtksvyaapapvvaktvtyaapavvyaapapvvaktv.yaapavvsyaa 142
                  P  v+   + +ap  v+ +    +P   aP +a + ++a+a v   +vya pa v  ++v+  +pa v+a++a    + v   a av + +a
  KIR64481.1 245 EP--VMLVHAVTAPTAVLRTLPELDPglwAPSLAAA-WSATAAV--TAVYASPAGVAPPAVAPGTPAEVFARAARHGDEHVvKLADAVLDAHA 332
                 33..3333344456666666666667******9999.7777775..79************************998776666466666664443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.34
# Mc/sec: 3069.80
//
Query:       KIR64482.1  [L=218]
Description: lipoprotein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-26   90.1   0.0    1.7e-25   89.1   0.0    1.5  1  DPBB_1    Lytic transglycolase
     0.0073   16.1   0.0      0.012   15.5   0.0    1.4  1  Barwin    Barwin family
  ------ inclusion threshold ------
       0.79    8.9   6.6        0.8    8.8   6.6    1.1  1  SOG2      RAM signalling pathway protein
         10    5.4   8.5         12    5.1   8.5    1.1  1  CDC27     DNA polymerase subunit Cdc27


Domain annotation for each model (and alignments):
>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0   3.8e-29   1.7e-25       5      83 .]     131     214 ..     127     214 .. 0.94

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 3.8e-29
                 EEEE-CCC..-TTSSB--TTS-EEE-SSS-TT-EEEE..TT.--EEEEEEEE----STTECEEE-HHHHHHHT-TTTS-EEEEE CS
      DPBB_1   5 saslykdg..tacGecyevkcltaahktlplgtycrv..ls.gksvtVtitDrgpfppgrhiDLSkaAfeklakpraGvipVky 83 
                  as+y++g  ta+Ge+++++++taahktlp+ t++rv   + gksvtV+i+Drgpf++gr +DLS+aAf+++a ++ G + Vky
  KIR64482.1 131 GASFYDEGqlTANGENFDPSAMTAAHKTLPFDTMVRVtnPAnGKSVTVRINDRGPFIDGRCLDLSRAAFAAIASVDVGALTVKY 214
                 589**99999***************************87446**************************************9998 PP

>> Barwin  Barwin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.6e-06     0.012      62     104 ..     163     208 ..     122     217 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.6e-06
      Barwin  62 kclrvtntatnaqvtvrivdq..csng.GldldvalfnkldtdGvG 104
                   +rvtn a++++vtvri d     +g  ldl  a f ++ +  vG
  KIR64482.1 163 TMVRVTNPANGKSVTVRINDRgpFIDGrCLDLSRAAFAAIASVDVG 208
                 568*****************976456669********999876665 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.6   0.00018       0.8     241     302 ..      56     126 ..      12     193 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00018
        SOG2 241 l........srsrrssssgnsaspaangaqsetsersasssg.vqssasstPlgegstsppgalsrqslst 302
                 +        ++ + s+s+++sasp++++  s++  rs+ +s+  +++a ++P  +++ ++ + ++++++++
  KIR64482.1  56 ApttaavpsASPSPSASVPPSASPSPTVTASPKATRSQAASRsRPRTAAPKPAATKAAATKKPTPTSNVVD 126
                 12222222223333333344444444444444444444433334444444444333333323333333333 PP

>> CDC27  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   8.5    0.0027        12     134     214 ..      48     128 ..      32     159 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0027
       CDC27 134 elgrpplaapaseakektangkkpka.akekaaketssakseskkksaekskdaskettkekaekaasskaaslkkkasaks 214
                 ++++ p+ ap+++a + + ++  + + +  + +++ + ++++  +++a+ s++ + + +++++++aa++k+ ++  + +++ 
  KIR64482.1  48 TVADVPVTAPTTAAVPSASPSPSASVpPSASPSPTVTASPKATRSQAASRSRPRTAAPKPAATKAAATKKPTPTS-NVVDSG 128
                 335556666666666666666433332223333333344444444445555555555566666666666665554.344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 1410.60
//
Query:       KIR64483.1  [L=375]
Description: stage II sporulation protein E [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-34  118.4   0.8    5.3e-34  117.8   0.1    1.6  2  SpoIIE       Stage II sporulation protein E (SpoIIE)
  ------ inclusion threshold ------
      0.055   13.1   0.1      0.055   13.1   0.1    2.4  2  PP2C_2       Protein phosphatase 2C
        1.3    8.7   6.0        2.1    8.1   6.0    1.2  1  7TM-7TMR_HD  7TM receptor with intracellular HD hydrolase


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.52   3.1e+03      22      75 ..     106     158 ..      99     161 .. 0.64
   2 !  117.8   0.1   8.9e-38   5.3e-34       4     191 ..     174     353 ..     171     355 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHHHHTTTSHHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTE CS
      SpoIIE  22 imgllrsalrelataglepaevlkrlnralardleeeerfaTavlavydpstgk 75 
                 i++++  + ++ a++ +e++++++ +++a+ r l+ +  ++ av ++y  st +
  KIR64483.1 106 IAAAVAAVRQRQAEQIAELSKLAAVAQQAVLRPLGPQ-VGTLAVAGRYISSTAT 158
                 4444444445555666778888888888887878777.7777777777777665 PP

  == domain 2  score: 117.8 bits;  conditional E-value: 8.9e-38
                 EEEEEEEECSSSSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEESSSSEEEEETTSTEEEEE--S CS
      SpoIIE   4 rlalvvgDvvGhGleAalimgllrsalrelataglepaevlkrlnralardleeeerfaTavlavydpstgkleyanaGhpppllvrpdggtklllast 102
                 ++++++gDv G+Gl+A  +++ +++  r  a++ +++  v++ l+ra+ar++++e  f+Ta l++  +  g+l+++n+Ghp pll+r+     l + ++
  KIR64483.1 174 GVRMIIGDVRGKGLDAVRLASIVLGSYRHVAYERADLRAVVADLDRAVARNVGDE-DFVTAALVE--ERGGTLTIVNCGHPSPLLLRRGAVIPLEPPAP 269
                 6899***************************************************.*******99..9********************55666666777 PP

                 S--TTTSSST-EEEEEEE--TTEEEEEESCCCCSSSHHHHHHCCCHHCH.HHHCT.....HCCHHHHHHHHHHHHTTSSSSS-EEEEEEE CS
      SpoIIE 103 glplGilpeadyetaelelepgdtlllyTDGvtEardsdgelfgkerll.allasaegesleelldalveellelgsgeleDDitllvlr 191
                  +plG++p   +  +  +lepgd+lll+TDG+ Ear  dge+f+ ++++ +ll      ++ + l  l  +l+e   g+l+DDi+l++++
  KIR64483.1 270 APPLGFMPVVRP--RVERLEPGDRLLLFTDGLGEAR-RDGEFFPTADRAwRLLGHG---TVGDGLASLETALVEWVHGRLDDDIALVLME 353
                 778***887555..556799****************.*********9998888844...4666667777777775556*********986 PP

>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   1.2      0.11   6.5e+02      45     104 ..      73     136 ..      33     150 .. 0.60
   2 ?   13.1   0.1   9.2e-06     0.055     156     208 ..     282     338 ..     207     340 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.11
      PP2C_2  45 iaveavvealaelleseeee.........eeallraleaailadvlkeeaeaqdaelkdyatTllaavv 104
                  a+ a+++a+a    + +            ++ + a++aa++     +++++q ael ++a+    av+
  KIR64483.1  73 AAATAIGSAFALAEPRTSLVtavnvagiaLATGIAAAVAAVR-----QRQAEQIAELSKLAAVAQQAVL 136
                 333344444443332222222222221114444444444444.....5566677777777776655555 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 9.2e-06
      PP2C_2 156 rirrlkledgdalllmTDGlanslrdeerfaelleellrvleeeg.......vseqLaef 208
                 r++r  le+gd+lll+TDGl ++ rd e f +  ++ +r l+          ++++L+e+
  KIR64483.1 282 RVER--LEPGDRLLLFTDGLGEARRDGEFF-PTADRAWRLLGHGTvgdglasLETALVEW 338
                 4444..569***********9888877766.88888898886655446555555566665 PP

>> 7TM-7TMR_HD  7TM receptor with intracellular HD hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   6.0   0.00035       2.1      47     143 ..      30     135 ..      23     139 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00035
  7TM-7TMR_HD  47 lllsklvvl.issiesiiylvplaavalLlsllldsrlalvvsvllsllisilf........gnnlellllalvsglvgallvrklrsRsdllragll 135
                  +ll+ +++  +++  +  y+   +a++ L++ l + r+ l v++ ++ ++s ++           ++++ +al++g+++a+ + + r+ ++++ ++ l
   KIR64483.1  30 VLLAIISGVeLADGRWAHYVALMVAAPFLAAALASWRVVLGVGAAATAIGSAFAlaeprtslVTAVNVAGIALATGIAAAVAAVRQRQAEQIAELSKL 127
                  4444444444457788999999**********************999999999779***99999999*****************************99 PP

  7TM-7TMR_HD 136 valvnvlv 143
                  +a+++ +v
   KIR64483.1 128 AAVAQQAV 135
                  99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2700.26
//
Query:       KIR64484.1  [L=618]
Description: butyryl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-30  104.0   0.3      6e-30  104.0   0.3    1.8  2  Acyl-CoA_dh_C  Acetyl-CoA dehydrogenase C-terminal like
      5e-17   61.9   0.0    9.2e-17   61.0   0.0    1.5  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    6.1e-14   52.5   4.5    3.2e-13   50.2   1.4    3.2  2  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    9.1e-10   38.4   1.8    9.6e-10   38.3   0.5    1.8  2  AcylCoA_DH_N   Acyl-CoA dehydrogenase N terminal
  ------ inclusion threshold ------
      0.017   15.4   0.0       0.13   12.5   0.0    2.4  2  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_C  Acetyl-CoA dehydrogenase C-terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3       1.2   4.3e+03      60      82 ..     371     393 ..     368     399 .. 0.77
   2 !  104.0   0.3   1.7e-33     6e-30       2     124 .]     480     614 ..     479     614 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
  Acyl-CoA_dh_C  60 dvvigwlllrqalaAqaklaage 82 
                     v++   + +q+++A+a+ ++++
     KIR64484.1 371 LVCYTASWQDQVAIAEAAGDEQA 393
                    57888889999999999887644 PP

  == domain 2  score: 104.0 bits;  conditional E-value: 1.7e-33
  Acyl-CoA_dh_C   2 laeieatvara....alkelaaaleaalealqeateallakaakg...dp...eealaaavpyLelfGdvvigwlllrqalaAqakla..agekda 85 
                    ++ei+++++++    +lk++++al++a +++q++++ l +++ ++   d    +++++ + ++L ++Gd+v+gwll rqa +A ++la   +++d+
     KIR64484.1 480 AGEIQEFITSEggngQLKQERQALGKAHAEVQTILGVLTGWLGEAqggDAralYKVGLSSRRFLLAVGDLVVGWLLQRQADVALRALAgeVSAADK 575
                    689******6656667*****************99999988887755533677***********************************997789** PP

  Acyl-CoA_dh_C  86 afyegKlatarfFaervLPraaalaaaieagddslmeld 124
                    afy+gK+a+a+fFa++vLPr++a++++ie++d  lm+l+
     KIR64484.1 576 AFYTGKVAAAKFFAREVLPRLGADRRIIESTDLELMDLP 614
                    *************************************96 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   2.6e-20   9.2e-17       2      95 ..     162     275 ..     161     277 .. 0.90

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 2.6e-20
                    EE---SS-SS-GGG---EEEEETT.EEEEEEEEEEEETTTT....-SEEEEEEE......TS---.----EEEEEEE....GG.........GEEE CS
  Acyl-CoA_dh_M   2 falTEpqaGsdvasvkttaaerdggeyvlnGeKiwitnaai....atlalvlar......tekpd.rarglslflvp..rdap.........gvsv 75 
                    + lTEp+aGsdv + +t+a+++ +g++ ++G K++it++++    + ++ vlar       +    +++glslf+vp  + +p         gv  
     KIR64484.1 162 MVLTEPDAGSDVGAGRTRAIPQPDGSWHIEGVKRFITSGEHdlsdNIVHYVLARpvgvegVG--GpGTKGLSLFVVPkfHFDPetgelgernGVYA 255
                    789****************************************777788*****99874333..366**********88777799*********** PP

                    -----BSS-TTS-EEEEEEE CS
  Acyl-CoA_dh_M  76 rrieeklGlrglptgelvfe 95 
                    + +e+k+G++  +t+e++f 
     KIR64484.1 256 TNVEHKMGIKVSNTCEMTFG 275
                    *****************996 PP

>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   1.4   8.8e-17   3.2e-13       2     144 ..     291     462 ..     290     468 .. 0.84
   2 ?   -0.4   0.1      0.33   1.2e+03      74      99 ..     566     593 ..     553     599 .. 0.65

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 8.8e-17
                    BHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTS............B-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------. CS
  Acyl-CoA_dh_1   2 kGfrvametlnheRlavaaaalglarraleealeyarrr............kafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd. 84 
                    +G+r++   +++ R++v+  a++++   + +aleya++r            +a   ++  h+ vr+ l   +  +e++r+lv  +a+ +d+ + + 
     KIR64484.1 291 DGIRQMFMIIEYARMMVGTKAIATLSTGYLNALEYAKNRvqgadlvqqadkTAPRVTITHHPDVRRSLMLQKSYAEGLRALVCYTASWQDQVAIAe 386
                    799999999******************************777777754443333456899*******************99988888444444444 PP

                    ...............HHHHHHHHHHHHHHHHHH.HHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHH CS
  Acyl-CoA_dh_1  85 ...............raeasmaKlfaselaqev.adlamqllGgaGyleeypverlyrdarvlrigeGtseiqrni 144
                                        ++K ++se a e+  ++a+q +Gg G+l++yp+e+++rda++++++eGt+ iq ++
     KIR64484.1 387 aagdeqatkiakrvnDLLLPLVKGVGSERAYEMlGHEALQTFGGSGFLQDYPLEQYVRDAKIDTLYEGTTAIQSLD 462
                    44556788999999999999*******999886269************************************8654 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.33
                    HHH--------..HHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_1  74 aaealdagkpd..raeasmaKlfasela 99 
                    +a  ++a++++  + ++++aK+fa e++
     KIR64484.1 566 LAGEVSAADKAfyTGKVAAAKFFAREVL 593
                    3333334444456699********9986 PP

>> AcylCoA_DH_N  Acyl-CoA dehydrogenase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.5   2.7e-13   9.6e-10       1      32 []       3      34 ..       3      34 .. 0.98
   2 ?   -3.0   0.0       2.2   7.7e+03      14      26 ..     417     429 ..     417     430 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 2.7e-13
  AcylCoA_DH_N  1 qYkAPlRDmrFvLyEvLdaealaalPgfadad 32
                  +Yk++lRD++F+L+Ev++a+   + ++++d+d
    KIR64484.1  3 HYKSNLRDLEFNLFEVFGADRAFGQEPYSDLD 34
                  8*****************************97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.2
  AcylCoA_DH_N  14 yEvLdaealaalP 26 
                   yE+L+ eal+  +
    KIR64484.1 417 YEMLGHEALQTFG 429
                   89**999998766 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.5   1.8e+03      18      46 ..     322     350 ..     317     357 .. 0.84
   2 ?   12.5   0.0   3.7e-05      0.13     100     132 ..     423     455 ..     376     457 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.5
                    HHHHHHHHHCTTT-------HHHHHHHHH CS
  Acyl-CoA_dh_2  18 fvelarervrassgekladdpatqlalae 46 
                    ++e+a++rv+ ++ +++ad++a  +++++
     KIR64484.1 322 ALEYAKNRVQGADLVQQADKTAPRVTITH 350
                    6899******9999999999887777765 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.7e-05
                    HHHHHCGGGGGBTT-HHHHHHHHHHHHCTSGGG CS
  Acyl-CoA_dh_2 100 alfeaaGgsalrkesplqRlwRDahaaaaHaal 132
                    ++ +++Ggs+ ++++pl+ + RDa++ + ++++
     KIR64484.1 423 EALQTFGGSGFLQDYPLEQYVRDAKIDTLYEGT 455
                    68899********************99888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4417.69
//
Query:       KIR64485.1  [L=89]
Description: hypothetical protein TK50_02090 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.051   13.4   0.7        2.1    8.2   0.0    2.0  2  PMP22_Claudin  PMP-22/EMP/MP20/Claudin family
      0.073   11.8   0.4      0.079   11.7   0.4    1.1  1  DUF2207        Predicted membrane protein (DUF2207)
       0.16   12.5   5.9       0.29   11.6   5.9    1.4  1  DUF202         Domain of unknown function (DUF202)
       0.62    9.5   3.2       0.73    9.2   3.2    1.1  1  CAP_N          Adenylate cyclase associated (CAP) N terminal
        1.7    8.9   8.5       0.56   10.4   6.0    1.6  2  DUF4381        Domain of unknown function (DUF4381)
        2.7    7.6   9.2       0.17   11.5   2.0    1.7  1  DUF4131        Domain of unknown function (DUF4131)
        8.1    6.3  10.4        1.1    9.0   1.0    2.2  2  DUF3953        Protein of unknown function (DUF3953)
        9.8    5.8   6.6        5.2    6.7   0.3    2.0  2  DUF3394        Domain of unknown function (DUF3394)


Domain annotation for each model (and alignments):
>> PMP22_Claudin  PMP-22/EMP/MP20/Claudin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.8     0.023        51      10      30 ..       7      27 ..       3      31 .. 0.76
   2 ?    8.2   0.0   0.00093       2.1     107     145 ..      32      70 ..      28      75 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.023
                   HHHHHHHHHHHHHHS-S-SEE CS
  PMP22_Claudin 10 vlaiaavillvvatitdqWlv 30
                   +++ia+ ++l+ a+ +++W+v
     KIR64485.1  7 IFLIAIGAILTFAIRANVWWV 27
                   345566666***********8 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00093
                    HHHHHHHHHHHHHHHHHHHHHHHHH----SS-SSSS-EE CS
  PMP22_Claudin 107 aGiiflvsgLcvlvgasiYtsriaedlskslskkqkysf 145
                     G +f+++gL+vl+ + ++ + + ++       +++ s+
     KIR64485.1  32 VGWVFILAGLAVLLTTLWFWQDRRKRARTLIVEENRLSH 70 
                    5889***************99888777655544666555 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   3.5e-05     0.079     402     438 ..      19      60 ..       2      83 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.5e-05
     DUF2207 402 llllvll.....lvfllilllillliaiivlllfsrllgrrt 438
                 ++ ++++      v+++++l +l++++  ++++  r+ ++rt
  KIR64485.1  19 AIRANVWwvdlrAVGWVFILAGLAVLLTTLWFWQDRRKRART 60 
                 444444444444555555555555555544444444444444 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   5.9   0.00013      0.29      18      67 ..       7      56 ..       2      57 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
      DUF202 18 lalialglallrffltgepsalg.kilglilivlgiltllvglvrylrrqr 67
                + lia+g+ l+ f  + ++ ++  +++g+++i++g+++ll+ l+ ++ r++
  KIR64485.1  7 IFLIAIGAILT-FAIRANVWWVDlRAVGWVFILAGLAVLLTTLWFWQDRRK 56
                55666665555.333444444447999*****************9999887 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.2   0.00033      0.73     221     257 ..      51      86 ..      44      89 .] 0.55

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00033
                 --TTSBE.......SSC--XXXXXXX....XXXXXXX CS
       CAP_N 221 WnkkGkdaeealkaaaaaasaaaaggpppPpPpPppa 257
                 W+++ k a + +  +++  s ++a  pppP PpPp a
  KIR64485.1  51 WQDRRKRARTLIV-EENRLSHPTAMMPPPPDPPPPTA 86 
                 7777777777765.34444555555555554444422 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3      0.99   2.2e+03      22      39 ..       8      25 ..       5      31 .. 0.47
   2 ?   10.4   6.0   0.00025      0.56      17      49 ..      30      59 ..      19      80 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.99
     DUF4381 22 wlllaalllllllvlalw 39
                 l++++++l + + + +w
  KIR64485.1  8 FLIAIGAILTFAIRANVW 25
                445545555333333333 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00025
     DUF4381 17 papGwwlllaalllllllvlalwllrrrkrnrr 49
                 a+Gw ++l a l++ll  l++w+ rr+++  r
  KIR64485.1 30 RAVGWVFIL-AGLAVLLTTLWFWQDRRKRA--R 59
                589999998.55666666666666555544..3 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.0   7.7e-05      0.17       5      33 ..      32      61 ..      28      64 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.7e-05
     DUF4131  5 lalvllalllllllllllllrr.rprrrvl 33
                + +v+++++l++ll+ l+++++ r+r r+l
  KIR64485.1 32 VGWVFILAGLAVLLTTLWFWQDrRKRARTL 61
                568888888888888888886635554444 PP

>> DUF3953  Protein of unknown function (DUF3953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   2.7     0.081   1.8e+02      23      38 ..       4      19 ..       3      19 .. 0.89
   2 ?    9.0   1.0   0.00051       1.1      23      37 ..      31      45 ..      30      49 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.081
     DUF3953 23 fsGillilaalfvlfV 38
                +sGi+li ++++++f+
  KIR64485.1  4 GSGIFLIAIGAILTFA 19
                79**********9985 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00051
     DUF3953 23 fsGillilaalfvlf 37
                ++G+++ila+l+vl+
  KIR64485.1 31 AVGWVFILAGLAVLL 45
                78***********95 PP

>> DUF3394  Domain of unknown function (DUF3394)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   1.4     0.046     1e+02       4      24 ..       7      27 ..       4      32 .. 0.87
   2 ?    6.7   0.3    0.0023       5.2     158     180 ..      33      57 ..      28      58 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.046
     DUF3394  4 vivvaliaiLlfaAatqgyfl 24
                ++++a+ aiL+fa     +++
  KIR64485.1  7 IFLIAIGAILTFAIRANVWWV 27
                899**********88888876 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0023
     DUF3394 158 elvyipA..llllalvallQrrrkk 180
                  +v+i A   +ll+++++ Q rrk+
  KIR64485.1  33 GWVFILAglAVLLTTLWFWQDRRKR 57 
                 5899988433588899******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 692.72
//
Query:       KIR64486.1  [L=176]
Description: phosphohistidine phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-08   32.7   2.1    8.3e-07   28.9   0.7    2.1  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.7   4.6e-11   8.3e-07       1      64 [.      11      73 ..      11      83 .. 0.89
   2 !    3.7   0.0    0.0025        45     122     158 ..      99     136 ..      76     167 .. 0.69

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 4.6e-11
                EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTT..S---EEEE-SSHHHHHHHHHHH CS
  His_Phos_1  1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlag..epidaiysSplkRarqTaelia 64
                l+L+RH++ e+  +   +     pLt++G++  +a++++la+    +d++++S  +R+rqT + ++
  KIR64486.1 11 LVLLRHAKAEAPGS---GPDVQRPLTARGHADSAAAGAWLARhgLLPDVVLCSAARRTRQTWHGVQ 73
                79**********99...599999*******************55567888***********88765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHHHHHTTTSE.EEEEE-HHHHHHHHHHH CS
  His_Phos_1 122 vaaRvaaaleelaarheget.vlvVsHggvirallarl 158
                   aR a+ l  ++++ ++ + vl+V+H   i +l a l
  KIR64486.1  99 YEARPADLLALVRSAPAEARtVLLVAHNPGISLLSALL 136
                 556666677777777666667******99888776653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      159  (0.00886831); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1374.33
//
Query:       KIR64487.1  [L=95]
Description: hypothetical protein TK50_02100 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.04   13.6   1.3      0.049   13.3   1.3    1.1  1  DUF4131   Domain of unknown function (DUF4131)
       0.19   12.2   2.2       0.25   11.8   2.2    1.2  1  DUF4231   Protein of unknown function (DUF4231)
       0.39    9.4   1.0       0.39    9.4   1.0    1.2  1  DUF2207   Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.3   8.2e-06     0.049       5      86 ..       7      93 ..       2      95 .] 0.66

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.2e-06
     DUF4131  5 lalvllalllllllll.llllrr.rprrrvllllllllllallgfalrapqpnandlsqlles..gqeviveG..vvaslpeltgsgt 86
                + l++l++++++++ + l +l +      vl+l++++ ll +l+f+ r +++ +    ++++   ++ v v+G  vv++  e+++ g+
  KIR64487.1  7 IFLIALGAIFAFAVQAdLGWL-NlGVVGWVLMLAGVVSLLTTLYFWNRGRRTVVATPVRQNRVvaDRVVPVQGepVVQEYREVRRPGR 93
                333344444444444442332.247777889******************999995555555445588888999877787777777665 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.2   4.2e-05      0.25      20      80 ..       5      58 ..       2      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.2e-05
     DUF4231 20 lrlitivlgallpilvssklgagvsvlkiltallsalvailaaleeffrykerWrryRsta 80
                +++++i lga+++++v          l +l++++   v +la+++++      W r R+t+
  KIR64487.1  5 ASIFLIALGAIFAFAVQ-------ADLGWLNLGVVGWVLMLAGVVSLLTTLYFWNRGRRTV 58
                57999***********9.......9*******************************99985 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.0   6.6e-05      0.39     395     437 ..      12      56 ..       1      85 [. 0.49

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 6.6e-05
     DUF2207 395 lilillallllvlllvfllilllillliaii..vlllfsrllgrr 437
                 l +i+++++++ l++  l++++++l+l++++  ++ l+ +  grr
  KIR64487.1  12 LGAIFAFAVQADLGWLNLGVVGWVLMLAGVVslLTTLYFWNRGRR 56 
                 333333333333333333333333333333300333333344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 794.51
//
Query:       KIR64488.1  [L=225]
Description: hemolysin III [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-42  143.4  13.6    9.6e-42  143.2  13.6    1.0  1  HlyIII    Haemolysin-III related
     0.0057   17.0   1.2      0.015   15.6   0.2    2.0  2  Tim17     Tim17/Tim22/Tim23/Pmp24 family
  ------ inclusion threshold ------
          2    8.0  24.9       0.11   12.2  10.8    2.3  2  DUF4203   Domain of unknown function (DUF4203)


Domain annotation for each model (and alignments):
>> HlyIII  Haemolysin-III related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2  13.6   1.6e-45   9.6e-42       5     223 ..      16     215 ..      12     216 .. 0.92

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 1.6e-45
      HlyIII   5 nEtlniwtHllgailfivlailllslaevkensklakvvvlvfllgallcllcSalyHtlsihseeklrkffaklDysgIslliagsylplilyalaka 103
                 ++ +++w H +++ +++v  i+l ++a+     ++  v++lv+ l+++ +++ SalyH   + se +  ++++++D+s+I+++iag+y+p++++ l   
  KIR64488.1  16 KPRMRGWLHTYAFFVALVCGIVLCAIAASRP-GWSPLVSCLVYSLTVCGLFGTSALYHRRVW-SE-RGYQIMRRMDHSMIFVFIAGTYTPFCVLLLD-- 109
                 68899***********888888888887666.57889**********************555.88.9*****************************4.. PP

      HlyIII 104 pkagllylslilalgvlgiisklvplfsrpearplravlfillgllgvipllhlllvltqlgeaaelalvllvlggvlylvGavfYalrvPErlkpgkf 202
                  +  +++l+l++  ++ g+ +klv+     ++r+++a l+++lg+++v  l + +l  +++      alvll++gg++y vGavfYalr     +p+++
  KIR64488.1 110 ARQATTMLALVWGGALGGVALKLVWP---HAPRWVSAPLYLALGWVSVAMLPQ-ILHSGGVT-----ALVLLAVGGAIYSVGAVFYALR-----RPNPW 194
                 5899**********************...9***********************.55555444.....8*********************.....***** PP

      HlyIII 203 divghsHqiFHvfvvlgalfh 223
                 ++v+++H++FH +++++a++h
  KIR64488.1 195 PTVFGHHEFFHACTLVAAICH 215
                 ********************9 PP

>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   2.6e-06     0.015       8      94 ..      27     131 ..      24     143 .. 0.77
   2 ?   -0.9   0.0      0.34     2e+03      13      20 ..     173     180 ..     159     207 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.6e-06
       Tim17   8 sgvlGallGavfglvkgsrradtp...................apskerlreglrsvgkrgpslGknfgvvgglysgiecaleklRgkediwnsvaAGa 87 
                 ++ +++++G v  ++ +sr   +p                   +  ++ ++e+  ++++r+  ++  f +++g y+ ++++l  +R+ ++++  v +Ga
  KIR64488.1  27 AFFVALVCGIVLCAIAASRPGWSPlvsclvysltvcglfgtsaLYHRRVWSERGYQIMRRM-DHSMIFVFIAGTYTPFCVLLLDARQATTMLALVWGGA 124
                 5566666666666677776666667777777777777777666555555777777777776.7789999****************************** PP

       Tim17  88 ltGallr 94 
                 l+G++l+
  KIR64488.1 125 LGGVALK 131
                 ****997 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.34
       Tim17  13 allGavfg 20 
                 a++Ga+++
  KIR64488.1 173 AVGGAIYS 180
                 33333332 PP

>> DUF4203  Domain of unknown function (DUF4203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   9.1       0.1     6e+02      49     101 ..      20      73 ..      12     108 .. 0.66
   2 ?   12.2  10.8   1.8e-05      0.11      28     121 ..      91     184 ..      79     197 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.1
     DUF4203  49 sslvqgaslvaalvvGllgGllallfwelglfllgalgGlllallilsll.egg 101
                   ++++  + +alv G++++++a+     + ++ +++  l+++ l+ ++   ++
  KIR64488.1  20 RGWLHTYAFFVALVCGIVLCAIAASRPGWSPLVSCLVYSLTVCGLFGTSAlYHR 73 
                 5688899999**************************777777666655552222 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1.8e-05
     DUF4203  28 sgfllgsllvlvlilkvvvlpsslvqgaslvaalvvGllgGllallfwelglfllgalgGlllallilsllegglitslpskaif....lvivvlgll 121
                 + f++ +   + +++ +     ++ q ++++a + +G+lgG+ + l+w+ +  +++a + l+l+++ +++l++ l++   +  ++    ++i ++g +
  KIR64488.1  91 MIFVFIAGTYTPFCVLL----LDARQATTMLALVWGGALGGVALKLVWPHAPRWVSAPLYLALGWVSVAMLPQILHSGGVTALVLlavgGAIYSVGAV 184
                 45555555555555555....6899**********************************************666666555555553333222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1747.23
//
Query:       KIR64489.1  [L=315]
Description: allophanate hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-87  291.1   1.1    1.7e-86  290.1   1.1    1.4  1  CT_A_B    Carboxyltransferase domain, subdomain A and B


Domain annotation for each model (and alignments):
>> CT_A_B  Carboxyltransferase domain, subdomain A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.1   1.1   9.5e-91   1.7e-86       1     263 [.      35     311 ..      35     312 .. 0.93

  Alignments for each domain:
  == domain 1  score: 290.1 bits;  conditional E-value: 9.5e-91
                 GT----S-SSHHHHHHHHHHTTS-TTS-EEEEESC-EEEEESS-EEEEEEESCEEEEET......................TEEE-SSCEEEE-TT-EE CS
      CT_A_B   1 lGvprsGamDrlalrlANrlvgNeegaaaLEitlggpelrfeedavvavtGadleatld......................gepvplwepvevkaGdvL 77 
                 lGvprsGa+D++alrlANrlvgN+e+aa+LEitl+g++lr++++ +va+tGad+++++                       ++p +  +p++v+aG+v+
  KIR64489.1  35 LGVPRSGALDPAALRLANRLVGNPEDAAGLEITLTGCALRLTRAGTVALTGADADVWIGdgrigavaearvggrpgdvrvgDRPGDVGRPLAVPAGAVV 133
                 6*********************************************************76999999999999999988887779999999********* PP

                 EEEEESSECEEEEEETT-BE---BTTB-S-BTTTTBSTTTTS---TT-EEEBSSSTT--S-C.BGGCS---SSCSEEEEEEEE-TTGCCB-HHHHHHHH CS
      CT_A_B  78 klgaakaGlraYLavaGgldvpevlgSrStdllaglGgleGraLkagdvLplgeaaaaaaakakeleaaapeeseeeevrvvpGpqadlfteealeall 176
                 ++g+a++Glr++LavaGg++vp+vlgSrStd+l+glG+    +L++gd+Lplg++ +++a+      +   + +++  +r+ +Gp++d+ft++al++ll
  KIR64489.1 134 RIGPARSGLRTWLAVAGGIAVPPVLGSRSTDTLSGLGPP---PLRDGDTLPLGDPGGDPAPV---DVTIGRPAPAALRLRLRLGPRDDWFTPAALDRLL 226
                 ***************************************...****************9985...33333333344456******************** PP

                 HS-EEEECEECSSEEEEESGG.SSCS..TEEEEEE--TTEEEE-CTTEEEEE-TTS-SEEEEEEEEEE-GGGHHHHTT--TTSEEEEE CS
      CT_A_B 177 ssewtvsaesdRmGvrLdGeaglerke.sellsegvvlGaiqvppdgqpivllaDhqttGGYpkiatvisadldklaQlrpgdkvrFe 263
                  +++tvs+ s+R+G rL+G a+l r+   el+seg+vlGa+qvp+dgqp+++laDh+ttGGYp++++v   d+  laQ+rpg++v+F+
  KIR64489.1 227 GTAYTVSPVSNRVGARLTG-APLPRAVaGELPSEGLVLGAVQVPADGQPLIFLADHPTTGGYPVVGVVD--DVTPLAQARPGTTVTFH 311
                 *******************.568884435***************************************7..99**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       193  (0.0107647); expected 358.6 (0.02)
Passed bias filter:                      149  (0.00831056); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2578.68
//
Query:       KIR64490.1  [L=249]
Description: hypothetical protein TK50_02120 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-95  318.0   0.0    4.8e-95  317.8   0.0    1.0  1  LamB_YcsF  LamB/YcsF family


Domain annotation for each model (and alignments):
>> LamB_YcsF  LamB/YcsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.8   0.0   2.7e-99   4.8e-95       1     238 [.       1     238 [.       1     239 [. 0.99

  Alignments for each domain:
  == domain 1  score: 317.8 bits;  conditional E-value: 2.7e-99
                 EEEEEEE---BTTB--S-HHHHCCC-SEEEEE-SSSS--HHHHHHHHHHHHHTT-EEEEE---S-TTTTT-S-----HHHHHHHHHHHHHHHHHHHHHT CS
   LamB_YcsF   1 idlnaDlGEsfgawklgdDeallplvtsaNiACGfHaGdpevmrktvelakekgVaiGAhpgypDlegFGRremelspeelealvlyQigaLkafakae 99 
                 +dlnaDlGE+fg w+lgdDeall+l+tsaN+ACGfH Gdp++mr+++++a+++gVa+GA++gy+Dl+gFGRr+++++ ++l++ ++yQ+gaL+af++a 
  KIR64490.1   1 MDLNADLGEGFGIWRLGDDEALLDLITSANVACGFHGGDPSTMRRVCAAAAHRGVAVGAQVGYRDLAGFGRRHIAYAFADLRDETTYQLGALDAFCRAY 99 
                 69************************************************************************************************* PP

                 T----EE---HHHHHHHHH-HHHHHHHHHHHHHH-TT.TEEEETTSHHHHHHHHCT--EEEEEETTB-B-TTSSB--TTSTTSB---HHHHHHHHHHHH CS
   LamB_YcsF 100 gvklshvkpHGaLynqaakdeelaeavveavkaldpelillglagseleeaaeeaglkvvaevfaDraYeadgslvprsqpgaviedpeevaervlklv 198
                  ++++++kpHGaLy++a  de++a+a+++a+ ++d++l++l+++gs l+++a+ agl+vvae faDr Y ++g+lvpr+  ga+++dpe+va+r+++++
  KIR64490.1 100 RTRVRYLKPHGALYHAASVDESQAAALIAAIDDYDRDLPVLCAPGSVLAQLATGAGLRVVAEGFADRGYLPNGTLVPRTALGALVTDPEQVAARAVRMA 198
                 *************************************************************************************************** PP

                 HTSEEEBTTSSEEE---SEEEE-SSSHHHHHCHCCCCHHH CS
   LamB_YcsF 199 eegkvtavdgeevelkadsicvHgDtpeavelaravreal 238
                 +e++v avdg+ v++ ++sic+HgDtp+av+ a+ vr+al
  KIR64490.1 199 TEQTVVAVDGTVVPCPVESICLHGDTPGAVASAELVRAAL 238
                 *************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1800.56
//
Query:       KIR64491.1  [L=610]
Description: alkyl hydroperoxide reductase / thiol specific antioxidant / Mal allergen [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-23   81.7   1.6    4.3e-05   23.3   0.0    7.4  7  NHL            NHL repeat
      2e-08   34.2   0.0    2.9e-08   33.7   0.0    1.2  1  AhpC-TSA       AhpC/TSA family
      4e-07   30.3   0.0    8.3e-07   29.3   0.0    1.5  1  Thioredoxin_8  Thioredoxin-like
    1.6e-05   24.6   0.0    2.9e-05   23.8   0.0    1.3  1  Redoxin        Redoxin
  ------ inclusion threshold ------
      0.011   15.4   0.0       0.17   11.5   0.0    2.7  2  SGL            SMP-30/Gluconolactonase/LRE-like region
       0.02   15.0   0.0        1.9    8.7   0.0    2.7  3  Str_synth      Strictosidine synthase
      0.061   13.8   0.0       0.13   12.7   0.0    1.6  1  Thioredoxin_2  Thioredoxin-like domain
       0.16   11.2   0.0       0.36   10.1   0.0    1.5  1  GSDH           Glucose / Sorbosone dehydrogenase


Domain annotation for each model (and alignments):
>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00019      0.42       8      26 ..     179     196 ..     171     198 .. 0.84
   2 ?   -1.0   0.0      0.96   2.2e+03       1      10 [.     226     235 ..     226     238 .. 0.84
   3 !    5.3   0.2    0.0097        22      14      26 ..     246     258 ..     243     260 .. 0.90
   4 !    6.4   0.0    0.0044       9.8       1      28 []     293     319 ..     293     319 .. 0.92
   5 !   14.9   0.0   8.8e-06      0.02       1      25 [.     347     372 ..     347     373 .. 0.92
   6 !   23.3   0.0   1.9e-08   4.3e-05       1      28 []     403     430 ..     403     430 .. 0.96
   7 !   12.2   0.0   6.6e-05      0.15       1      26 [.     444     469 ..     444     471 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
                 EEETTTEEEEEECCCTEEE CS
         NHL   8 avdsnGdiyVaDsenhrvq 26 
                 a+ ++G+++V+Ds +h+++
  KIR64491.1 179 AL-DGGHLLVSDSARHSLV 196
                 44.8************985 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.96
                 BSSEEEEEEE CS
         NHL   1 fnyPhGvavd 10 
                 f++P+G++ +
  KIR64491.1 226 FSEPQGLCRL 235
                 899****965 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0097
                 EEEEEECCCTEEE CS
         NHL  14 diyVaDsenhrvq 26 
                 d++VaD+ nh ++
  KIR64491.1 246 DVVVADTVNHLLR 258
                 79********986 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0044
                 BSSEEEEEEETTTEEEEEECCCTEEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvqvF 28 
                 +++P++va   +++++Va  + h++++F
  KIR64491.1 293 LSSPWDVAW-YDDRVIVAMAGIHQLWWF 319
                 678999999.6***************99 PP

  == domain 5  score: 14.9 bits;  conditional E-value: 8.8e-06
                 BSSEEEEEEE.TTTEEEEEECCCTEE CS
         NHL   1 fnyPhGvavd.snGdiyVaDsenhrv 25 
                 +++P+G++v+ ++ +++VaDse++ +
  KIR64491.1 347 LAQPSGLSVSaDGTRLWVADSETSAI 372
                 689*******************9987 PP

  == domain 6  score: 23.3 bits;  conditional E-value: 1.9e-08
                 BSSEEEEEEETTTEEEEEECCCTEEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvqvF 28 
                 +++P Gv+++++G +++aD++n  v+ F
  KIR64491.1 403 LQHPLGVCALPDGSVLIADTYNGAVRRF 430
                 789**********************998 PP

  == domain 7  score: 12.2 bits;  conditional E-value: 6.6e-05
                 BSSEEEEEEETTTEEEEEECCCTEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvq 26 
                 +++P++v+++ +G ++V +s  hr+ 
  KIR64491.1 444 LAEPSDVVLTADGGVLVVESAAHRLT 469
                 678*********************86 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.3e-11   2.9e-08       4     122 ..       6     125 ..       3     127 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.3e-11
                 B----EEE...STTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCH......HHHHHHHH-H.SSEEEE-TTSH CS
    AhpC-TSA   4 kapdfelk...nadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspe......shkkfiekeslnfpllsDeegk 93 
                 +ap+  +    n+ g++ +l+d++gk+++  f+++  c  C + l +l+ l e++++  + v+g+ + + e      ++++ +e++++  p+l D+e +
  KIR64491.1   6 RAPELRGRgwlNTGGRDLKLADLRGKITIADFWTF-CCINCLHVLDELRPLEEKYADV-LVVVGIHSPKFEhekdpaAVAAAVERYGVHHPVLDDPELD 102
                 57777777777999*********************.*******************965.567777765555678999********************** PP

                 HHHHTT-EETTTTECSCEEEEE-TTSBEE CS
    AhpC-TSA  94 vakaygvlkeekglalratfvidkegkir 122
                 + ++y +       a+++  vid+eg ++
  KIR64491.1 103 MWQQYAAR------AWPTLAVIDPEGYVV 125
                 ********......************987 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   3.7e-10   8.3e-07       1      95 []      30     124 ..      30     124 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 3.7e-10
                    .SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-S..S-HHHHHHHGGGS-TTSEE.EE-TT-HHHHTT-S--TT-SEEEEE-TT-B CS
  Thioredoxin_8   1 gkvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsld..kkeeefekylkknkkpwlsvpfddkkrnklkkkynvkaiPtlvvldknge 94 
                    gk+++  f++ +c +c +++ +l  l+ek+   + +++v +++   + e++  ++ +  ++  +++p+ d+    ++++y   a+Ptl v+d++g 
     KIR64491.1  30 GKITIADFWTFCCINCLHVLDELRPLEEKYA--DVLVVVGIHSPkfEHEKDPAAVAAAVERYGVHHPVLDDPELDMWQQYAARAWPTLAVIDPEGY 123
                    699999************************9..**********722345566666666677899******************************98 PP

                    E CS
  Thioredoxin_8  95 v 95 
                    v
     KIR64491.1 124 V 124
                    7 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.3e-08   2.9e-05      15     136 ..      17     133 ..       5     142 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.3e-08
                 TTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHH........HHHHHHHTT-TSEEEE-TTSHHHHHTT-TT CS
     Redoxin  15 atdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndaf........vkefwgkeglkfpvlsDgsaaftkalGlrl 105
                 +t+g +++l++++gk ++  f++   c  C + + +l+ l+e+++   +  v+v + +  f        v ++++++g+++pvl D++ ++ +++ +r 
  KIR64491.1  17 NTGGRDLKLADLRGKITIADFWTF-CCINCLHVLDELRPLEEKYA---DVLVVVGIHSPKFehekdpaaVAAAVERYGVHHPVLDDPELDMWQQYAAR- 110
                 689999**********99999998.78888887756666655544...445566666666677999999***************************99. PP

                 EEE.GGGEEE-EEEEEEETTEEEEEEESSSC CS
     Redoxin 106 eedaseglrtpryavidedgkvvylevepep 136
                         + p++avid +g vv++  ++ +
  KIR64491.1 111 --------AWPTLAVIDPEGYVVATMAGEGH 133
                 ........***************99887755 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.45     1e+03     138     162 ..     175     199 ..     116     233 .. 0.61
   2 ?   11.5   0.0   7.4e-05      0.17     134     221 ..     348     441 ..     341     465 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.45
         SGL 138 GlawspdgktlYlaDsltrkiwayd 162
                 G a+  dg +l++ Ds+++++++  
  KIR64491.1 175 GKALALDGGHLLVSDSARHSLVELA 199
                 5566666666666666666666554 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.4e-05
         SGL 134 tipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkge........gepDGlavDaeGnvwvAvwgggkvvrfdpd.Gklieeik 221
                 + p Gl +s+dg+ l +aDs t  i  ++    g+ ++ + +f d+   +        + p G++   +G v +A   +g v+rfdp+ G++  +++
  KIR64491.1 348 AQPSGLSVSADGTRLWVADSETSAIRYVENGVLGTAVG-QGLF-DFGHVDgpadrallQHPLGVCALPDGSVLIADTYNGAVRRFDPAsGQV-STVA 441
                 56889999999999999999999999988877777554.3334.555544557779987799999999999999999999999999996664.4444 PP

>> Str_synth  Strictosidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.9   6.6e+03      61      77 ..     175     191 ..     170     195 .. 0.79
   2 ?    3.1   0.0     0.045     1e+02      56      84 ..     347     374 ..     342     378 .. 0.85
   3 ?    8.7   0.0   0.00084       1.9      34      82 ..     422     469 ..     416     472 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.9
   Str_synth  61 Gialsedgsfvlvceta 77 
                 G al+ dg ++lv++ a
  KIR64491.1 175 GKALALDGGHLLVSDSA 191
                 78999999***999866 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.045
   Str_synth  56 LyfanGialsedgsfvlvcetamkrisry 84 
                 L+ + G+++s dg+ + v++  ++  +ry
  KIR64491.1 347 LAQPSGLSVSADGTRLWVADSETSA-IRY 374
                 78899************99998887.555 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00084
   Str_synth  34 dktGrllkydkstkvvkvlldkLyfanGialsedgsfvlvcetamkris 82 
                   +G + ++d+   +v +++d L+ +  + l+ dg  vlv+e a +r++
  KIR64491.1 422 TYNGAVRRFDPASGQVSTVADGLAEPSDVVLTADGG-VLVVESAAHRLT 469
                 5679999***************************98.556676666655 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.8e-05      0.13       4     107 ..      29     139 ..      26     141 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.8e-05
  Thioredoxin_2   4 ngkpvlvvftdpdCpyCkklkkelkel.ddvtvrvllfp.........lkpsfepkavaiwcakekkkafkd........ieenvelarkygvrgt 81 
                     gk ++++f++  C +C    +el++l +++ + ++ +                   +a+  a e                + + +  ++y  r+ 
     KIR64491.1  29 RGKITIADFWTFCCINCLHVLDELRPLeEKYADVLVVVGihspkfeheK------DPAAVAAAVE------RygvhhpvlDDPELDMWQQYAARAW 112
                    6999***********************7444444333333334432222......2222222222......1333445556799************ PP

  Thioredoxin_2  82 Ptivfldgk.eivarlpGyvpaeelea 107
                    Pt+ ++d++  +va++ G   ae l+ 
     KIR64491.1 113 PTLAVIDPEgYVVATMAGEGHAEGLAR 139
                    *********999999999988888776 PP

>> GSDH  Glucose / Sorbosone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00016      0.36       1      54 [.     403     461 ..     403     469 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00016
                 -S-EEEEEE-TTS-EEEEET.TTEEEEEE..TTEE.EEEEE-....----STT-SEEEE CS
        GSDH   1 lehPwslaflpdgrlLvter.sGrlrlvk.adgklkepiagv..p.evvakgqgGlldv 54 
                 l+hP ++  lpdg++L++   +G +r ++ a+g++++  +g+  p +vv   +gG+l v
  KIR64491.1 403 LQHPLGVCALPDGSVLIADTyNGAVRRFDpASGQVSTVADGLaePsDVVLTADGGVLVV 461
                 69***************9998********777887655555555359999999999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4663.49
//
Query:       KIR64492.1  [L=1004]
Description: hypothetical protein TK50_02130 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1004 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 7157.44
//
Query:       KIR64493.1  [L=329]
Description: 2-oxoisovalerate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-44  152.0   0.0    1.6e-44  151.7   0.0    1.1  1  Transket_pyr     Transketolase, pyrimidine binding domain
    4.2e-37  126.8   0.0      8e-37  125.9   0.0    1.5  1  Transketolase_C  Transketolase, C-terminal domain


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.7   0.0   1.8e-48   1.6e-44       3     175 ..       6     179 ..       4     182 .. 0.97

  Alignments for each domain:
  == domain 1  score: 151.7 bits;  conditional E-value: 1.8e-48
                   EEHHHHHHHHHHHHHCTTTTEEEEESSTH..HHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGG..HHGGHHH CS
  Transket_pyr   3 iawrkaeaealaellkedpevvligaDva..ggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangA..qiyadqa 95 
                   ++  ka++  l + l+ d++vv++g+Dv+  gg+f  + gl++d+g++rvid++++E++++g+avG+a++g  ++++e+qF  F+ +A  qi+ + a
    KIR64493.1   6 LTLGKALNAGLRRALEHDQKVVIMGEDVGklGGVFRITDGLQKDFGDQRVIDTPLAESGIIGTAVGLAIRG-FRPVCEIQFDGFVYPAydQIVSQVA 101
                   68899******************************************************************.6************************ PP

                   HHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEE CS
  Transket_pyr  96 irsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksll 175
                   ++++++ gk+++++v+r p+g g  + eh+s ++ea++++++glkvv++++p++++ ++++a++  +++P+v+++pk+ +
    KIR64493.1 102 KMHYRSQGKVRIPMVIRIPYGGGIGAVEHHSESPEAYFAHTAGLKVVTCANPQDAYWMIQQAVA--SDDPIVFLEPKRRY 179
                   ****************************************************************..668********987 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9   0.0   8.9e-41     8e-37       3     124 .]     200     319 ..     198     319 .. 0.96

  Alignments for each domain:
  == domain 1  score: 125.9 bits;  conditional E-value: 8.9e-41
                      EEEEETTSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSSEE CS
  Transketolase_C   3 aeilregkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdgldapv 96 
                      a++ r g+d t++ayG mv+++l+Aa++++++g + eVvdlrt++plD   + esv++tgr+vvv+ea  + G+g+e+aa+++ee+f +l+apv
       KIR64493.1 200 ARVARAGTDATVLAYGPMVRTCLDAAAAAAEDGRELEVVDLRTLSPLDLTAVYESVRRTGRCVVVHEAPGNLGLGAEIAARVTEECFYSLEAPV 293
                      7899****************************************************************************************** PP

                      EEEEE-SSSSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C  97 krvggpdviepgsaeelekafgldaeki 124
                      +rv+g+d+  p++a  +e+++++d +++
       KIR64493.1 294 LRVTGFDT--PYPASRVEEEYLPDLDRV 319
                      ********..777779*******98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2383.66
//
Query:       KIR64494.1  [L=395]
Description: pyruvate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-69  233.3   0.0    3.6e-69  233.0   0.0    1.1  1  E1_dh           Dehydrogenase E1 component
    0.00034   20.4   0.1     0.0089   15.8   0.1    2.2  1  TPP_enzyme_C    Thiamine pyrophosphate enzyme, C-terminal TPP
  ------ inclusion threshold ------
      0.015   14.5   0.0      0.033   13.4   0.0    1.4  1  DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.0   0.0     6e-73   3.6e-69       4     291 ..      71     353 ..      68     362 .. 0.90

  Alignments for each domain:
  == domain 1  score: 233.0 bits;  conditional E-value: 6e-73
                 HHHHHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TTSEEEESS--HHHHHHTT--HHHHHHHHTT-TTTSSGTT-.-E..BTT..BEEE-SS CS
       E1_dh   4 vllrrvedaldalykrkkrigfyhlsagqealkvgiaaalekeDliiteYReagvllarglsleeilaeltgkvkgkggsrhelmyaekesrilggngi 102
                  +l+r +da +  ++r++ +g+ ++  gqea++vg+  al  +D+ +++YRe+gvl+ rg++    l  ++g  +g  +        ++e ++    + 
  KIR64494.1  71 LVLVRKLDAEATALQRQGELGLWASLLGQEAAQVGSGRALRSQDMAFPTYREHGVLYCRGIDPIMPLGLFRGVDQGGWD--------PNEFKFNMYTIV 161
                 57899***********************************************************999999998844333........344457777788 PP

                 TTTHHHHHHHHHHHHHHHTS-.....--EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEESEETTEEHHHH-S---GGG..TTTTS-EEEEETTS CS
       E1_dh 103 vgaqvplvaGialaakiegkk.....evailliGDgAanqGdvyealnlaalwklpvifvveNNkygisTeaekasaskeladrargvgipglrVdgnD 196
                 +gaq  ++ G a+   ++gk+     e++i+++GDgA++qGdv ea+  a+++++p +f+++NN+y+is + e++++++  ++rarg+g pg+rVdgnD
  KIR64494.1 162 IGAQTLHATGYAMGVHMDGKTggddgEAVIAYFGDGATSQGDVNEAFVWASVFNAPLVFFCQNNQYAISEPLERQTRVPL-YQRARGFGFPGVRVDGND 259
                 8888888888888888776643333499**************************************************95.567*************** PP

                 HHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHH CS
       E1_dh 197 plavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvseeelkeiekevrkeveeavkka 291
                 +la y++++ A + ar+g+gp+lie+ tYR+g H++sDdp++yr + eve++++k dpi+r+k++L k+ +++e    e+++++r+e  +  +++
  KIR64494.1 260 VLASYAVTRHALDNARHGQGPSLIEAYTYRMGAHTTSDDPTRYRIASEVEAWQAK-DPIARMKAFLEKQKIADESFFAEVDEQARAESVHLRERV 353
                 *************************************************999988.****************************99866655555 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   1.5e-06    0.0089      33     152 ..     169     284 ..     156     285 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.5e-06
                   HHHHHHHHHH.....HSTTSEEEEEEEHHHHHHT..GGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTTTSBB.BS----HHHHHHHTTS CS
  TPP_enzyme_C  33 glpaAiGakl.....akpdrevvaivGDGgflmi..lqelatavrrnlpitvvvlnNegygmtggqqepfggkrksgpagkdlkpvdfaklaealGa 122
                   + ++A+G+ +      + ++ v+a+ GDG++      ++++ a   n+p+++++ nN++       +ep             ++ v + + a+++G 
    KIR64494.1 169 ATGYAMGVHMdgktgGDDGEAVIAYFGDGATSQGdvNEAFVWASVFNAPLVFFCQNNQYA-----ISEPLER----------QTRVPLYQRARGFGF 250
                   56788888887654435578**********887773455677777779999999999876.....2233322..........223445667777777 PP

                   EEEEESSH.HHHHHHHHHHHH....CSSSEEEEE CS
  TPP_enzyme_C 123 kgarvekadveeleealkeal....ekkgpalie 152
                   +g+rv+ +dv    ++ + al    + +gp+lie
    KIR64494.1 251 PGVRVDGNDVLASYAVTRHALdnarHGQGPSLIE 284
                   7777776666555444444444443777888877 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.6e-06     0.033     118     178 ..     171     232 ..     156     238 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.6e-06
  DXP_synthase_N 118 saalGlavardlkg.ekkkvvaviGDgaltgGmafealnnigelkkkllvilNdNemsiskn 178
                      +a+G+ +  ++ g + + v+a  GDga + G   ea+  ++  ++ l+    +N+ +is++
      KIR64494.1 171 GYAMGVHMDGKTGGdDGEAVIAYFGDGATSQGDVNEAFVWASVFNAPLVFFCQNNQYAISEP 232
                     5677777777776634589****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2959.41
//
Query:       KIR64495.1  [L=406]
Description: hypothetical protein TK50_02160 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3170.85
//
Query:       KIR64496.1  [L=564]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-07   30.8   0.2      0.005   16.9   0.1    2.2  2  Dynamin_N     Dynamin family
    3.3e-06   27.2   0.0    7.9e-06   25.9   0.0    1.7  1  MMR_HSR1      50S ribosome-binding GTPase
    0.00058   19.8   0.0      0.031   14.2   0.0    2.2  2  RsgA_GTPase   RsgA GTPase
     0.0013   18.2   0.1       0.57    9.7   0.0    2.2  2  FeoB_N        Ferrous iron transport protein B
     0.0016   18.9   0.4      0.011   16.1   0.1    2.6  2  AAA_16        AAA ATPase domain
     0.0033   17.9   0.0     0.0066   17.0   0.0    1.4  1  ABC_tran      ABC transporter
      0.006   16.3   0.0      0.013   15.2   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
      0.008   16.4   0.3        3.6    7.9   0.0    2.4  2  AAA_22        AAA domain
  ------ inclusion threshold ------
      0.056   13.9   0.0      0.088   13.3   0.0    1.1  1  AAA_23        AAA domain
      0.056   13.7   0.3       0.82    9.9   0.1    2.6  2  AAA_28        AAA domain
       0.11   11.5   0.0       0.19   10.7   0.0    1.3  1  T2SSE         Type II/IV secretion system protein
       0.13   11.6   0.1       0.72    9.2   0.0    2.0  2  FtsK_SpoIIIE  FtsK/SpoIIIE family
       0.13   12.2   1.0        7.1    6.5   0.0    2.7  3  NACHT         NACHT domain
       0.19   11.1   0.0        0.3   10.5   0.0    1.2  1  SMC_N         RecF/RecN/SMC N terminal domain
       0.22   11.3   0.0       0.33   10.7   0.0    1.2  1  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   4.2e-06     0.005       1      33 [.      70     103 ..      70     107 .. 0.89
   2 !   11.9   0.0   0.00015      0.18     100     167 ..     145     212 ..     139     213 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.2e-06
                 EEEEEBTTTTHHHHHHHHHTS--S---SS.S--- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpn.ptTr 33 
                 +a+ G++ sGKSS+ naL + ++ p+g   ptT 
  KIR64496.1  70 VALAGATGSGKSSLFNALARFELSPVGVRrPTTG 103
                 7899**********************98767775 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00015
                 S-SEEEEE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N 100 vkgltlvDlPGldsvnkrdqelvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                  +gl+l+DlP +dsv+  +   v++++   d++++v++ ++ + ++  +   re   + + t+vvl++
  KIR64496.1 145 LHGLVLLDLPDFDSVQRSHRLEVDRLLGLVDLVIWVVDPQKYADRVVHTSYLREFHRHRDVTLVVLNQ 212
                 5799**************************************************************97 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   6.7e-09   7.9e-06       2     113 ..      70     211 ..      69     212 .. 0.55

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 6.7e-09
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGC....................SSHHHHHHH............HH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGl....................iegaseekg............lg 67 
                 va++G + +GKS+L+nal +   + v+ +  tT       +   +   +l+D  G+                            g             +
  KIR64496.1  70 VALAGATGSGKSSLFNALARFeLSPVGVRRPTTGVAHACVWGPLDGATRLLDWTGVlprhrfvresaldgddesalH-------GlvlldlpdfdsvQR 161
                 89*****************9646777777777777766666644456677777776344443333333333333330.......033333333333222 PP

                 HHHHHHHC....TSEEEEEEETTTTCSHHHHHHHHHHHHH..TTSEEEE.EEE CS
    MMR_HSR1  68 kaflalee....adlillvvdaseeklkpldeeleellee..akkplil.vln 113
                  + l++++    +dl+++vvd   +k+++      ++l+e  ++++++l vln
  KIR64496.1 162 SHRLEVDRllglVDLVIWVVD-P-QKYADR-VVHTSYLREfhRHRDVTLvVLN 211
                 222222223334799999999.4.457554.4445555555545555442555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.6e-05     0.031      97     121 ..      65      89 ..      44      99 .. 0.82
   2 ?    3.3   0.0     0.057        69      36     100 ..     193     263 ..     161     266 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.6e-05
                  CTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallp 121
                   ++ +++l+G +G GKS+L nal+ 
   KIR64496.1  65 RDHTVVALAGATGSGKSSLFNALAR 89 
                  4558899***************975 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.057
                  HHHHHHHHHTT-EEEEEEE-GGG--HHH......HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTS CS
  RsgA_GTPase  36 drfLvlaeekgiepvivlnKiDlleeee......eleelkeelealgyevllvsaktkegleelkellkdk 100
                  + +L ++++++   ++vln +D l  +e      +l++l ++ e  g+++l++ a + +g++el++ l+  
   KIR64496.1 193 TSYLREFHRHRDVTLVVLNQADRLPPAElprvlaDLRRLLDADELGGVPLLATTAVDPNGITELRATLERT 263
                  4688888888888999**********999998888888888889999******************999875 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00047      0.57       2      23 ..      69      90 ..      68      96 .. 0.88
   2 !    6.3   0.0    0.0052       6.2      77     154 ..     172     258 ..     142     260 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00047
                EEEEEESTTSSHHHHHHHHHTT CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltga 23
                 val+G   +Gk++lfnal+  
  KIR64496.1 69 VVALAGATGSGKSSLFNALARF 90
                599****************875 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0052
                 TSSSEEEEEEEGGGHHHHHHHHHHHHHTTSS...EEEEEETHHHHHHTT...EEE-HHHH..HHHH.TS-EEEEBTTTTBTHHHHHH CS
      FeoB_N  77 eepdvvvnvvdatnlernLyLtlqllelgvp...vvlalnmideaekkg...ieidlkkL..sekL.gvpvvktsakkkegieellk 154
                   +d+v+ vvd ++    ++ t  l e++ +   ++++ln  d +  ++   +  dl++L  +++L gvp ++t+a + +gi el++
  KIR64496.1 172 GLVDLVIWVVDPQKYADRVVHTSYLREFHRHrdvTLVVLNQADRLPPAElprVLADLRRLldADELgGVPLLATTAVDPNGITELRA 258
                 4579***********************98543337899*****97666511145555555332344359999999999999999976 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   9.3e-06     0.011      23     127 ..      66     232 ..      50     245 .. 0.55
   2 ?   -1.2   0.0       1.9   2.3e+03      81     123 ..     392     427 ..     370     454 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9.3e-06
      AAA_16  23 rpelvllsGesGvGKsslvrellralekd.........g.gif.lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.... 106
                 +  +v l G+ G+GKssl ++l+r +e +         g +++ ++g  d     ++++ ++ +l r++++r+ + + ++ e + +   l++       
  KIR64496.1  66 DHTVVALAGATGSGKSSLFNALAR-FELSpvgvrrpttGvAHAcVWGPLDGA---TRLLDWTGVLPRHRFVRESALDGDD-ESALHGLVLLDLPDfdsv 159
                 44799******************7.444435666665522333455555555...8888899999887777777777333.444444444443334444 PP

      AAA_16 107 ....................................................avpelagaeasrllellkrll 127
                                                                     +++ l++ae  r+l+ l+rll
  KIR64496.1 160 qrshrlevdrllglvdlviwvvdpqkyadrvvhtsylrefhrhrdvtlvvlnQADRLPPAELPRVLADLRRLL 232
                 4444444444444555555544444444444444444444444444444444444444444444444444444 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.9
      AAA_16  81 llrqlldeaesaeleawrekleeala.avpelagaeasrllell 123
                  +r+++d+a ++++++w+++ ++a++            +l ++l
  KIR64496.1 392 AVRAVADRAGTDLPDPWATAVTTAARsRL--------GDLPDAL 427
                 45666677777778888887777666311........2233333 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   5.5e-06    0.0066      12      34 ..      68      90 ..      60      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 5.5e-06
                SEEEEEESTTSSHHHHHHHHTTS CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 12 ekvaivGenGaGKStLlkllagl 34
                ++va+ G +G+GKS+L+++la+ 
  KIR64496.1 68 TVVALAGATGSGKSSLFNALARF 90
                789*****************986 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-05     0.013      18      43 ..      62      88 ..      55      94 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-05
      AAA_29 18 eidlkg.atlltGpsGsGKSTllDAiq 43
                 ++++  ++ l+G++GsGKS+l+ A++
  KIR64496.1 62 ALSRDHtVVALAGATGSGKSSLFNALA 88
                5565666899*************9986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0     0.003       3.6       4      28 ..      66      90 ..      63     104 .. 0.88
   2 !    6.2   0.1    0.0099        12      81     122 ..     195     239 ..     147     248 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.003
      AAA_22  4 tagilvvtGesGtGKTtllrrlleq 28
                +++++++ G +G+GK+ l + l++ 
  KIR64496.1 66 DHTVVALAGATGSGKSSLFNALARF 90
                567899*************999876 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0099
      AAA_22  81 aleqalraravielliiDEaqhlrs....eealeeLrsllnl.srkg 122
                 +l++  r+r+v  l+++  a++l +    +++l +Lr+ll+  +  g
  KIR64496.1 195 YLREFHRHRDV-TLVVLNQADRL-PpaelPRVLADLRRLLDAdELGG 239
                 55555666666.***********.77789***********9654444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.4e-05     0.088      18      39 ..      66      87 ..      58      89 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.4e-05
      AAA_23 18 skgltlItGpNGaGKTTildAi 39
                ++ ++++ G +G+GK+++++A+
  KIR64496.1 66 DHTVVALAGATGSGKSSLFNAL 87
                5678999**************8 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00068      0.82       2      22 ..      70      90 ..      69     106 .. 0.86
   2 ?    0.4   0.0      0.56   6.7e+02      14      40 ..     305     332 ..     300     347 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00068
      AAA_28  2 ivitGgestGKTtlleaLaar 22
                +++ G+ ++GK++l +aLa+ 
  KIR64496.1 70 VALAGATGSGKSSLFNALARF 90
                799***************974 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.56
      AAA_28  14 tlleaLa.argypvvpEaareileekla 40 
                  l++aLa a g+p v+Ea+   +++++a
  KIR64496.1 305 GLTRALAgAAGVPAVAEAVEGAYRHRAA 332
                 4899***666*******99887777665 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00016      0.19     106     150 ..      45      88 ..      10      92 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
       T2SSE 106 ddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyall 150
                  +l+ +++l e+    l+ + r + ++ ++G+TgsGK+ l +al 
  KIR64496.1  45 TQLVPAHTLVERAGTRLALS-RDHTVVALAGATGSGKSSLFNALA 88 
                 55555555556666666677.789999*************99975 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0006      0.72      42      59 ..      70      87 ..      44      88 .. 0.81
   2 ?   -0.6   0.0      0.57   6.8e+02      87     125 ..     237     273 ..     217     292 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0006
                  EEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE 42 llvaGatgsGKStalntL 59
                  + +aGatgsGKS   n+L
    KIR64496.1 70 VALAGATGSGKSSLFNAL 87
                  4478*********99998 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.57
                   GTT-TTBSS.S-B-SHHHHHHHHHHHHHHHHHHHHHHHH CS
  FtsK_SpoIIIE  87 lediphllsvavatdperalraleeLvkemeeryalfre 125
                   l ++p l++   a dp+ ++++ + L+  + er+a +r 
    KIR64496.1 237 LGGVPLLAT--TAVDPNGITELRATLERTVAERQAALRR 273
                   556676777..7889999999999999999999988875 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0059       7.1       2      21 ..      69      88 ..      68      90 .. 0.89
   2 ?    3.1   0.1     0.065        77      75     143 ..     198     267 ..     160     285 .. 0.78
   3 ?   -1.7   0.0         2   2.4e+03     117     162 ..     499     547 ..     483     550 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0059
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                +v+l G+ GsGK+ L   la
  KIR64496.1 69 VVALAGATGSGKSSLFNALA 88
                799************99887 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.065
                 HHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEE..EECCCHHHHCTTSSCE.... CS
       NACHT  75 vllelperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeaslllt..vrpralrdleeqleea...i 143
                 +  ++++ +L +l  +D+l+    +    +v   L++l+ +  l +++ll+t  v p++  +l+ +le++   +
  KIR64496.1 198 EFHRHRDVTLVVLNQADRLPPAELP----RVLADLRRLLDADELGGVPLLATtaVDPNGITELRATLERTvaeR 267
                 4556777788999999999985555....89999****************993346889999999999885544 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2
                 TTT--EEEEEEECCCHHH...HCTTSSCE..EEEE--TCCHHHHHHHHC CS
       NACHT 117 llpeasllltvrpralrd...leeqleeaivlevegfsesrrkqlvrky 162
                 ll +  + +++rp  +     ++   e+   l+v++ +++++++ vr +
  KIR64496.1 499 LLAGLLVAASTRPVVRWAarrARGRAEKRLTLAVGAVGQEHVVEPVRAV 547
                 6666667777777644332336666677789999999999998888766 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00025       0.3      18      45 ..      61      88 ..      56      98 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00025
                EEEETTSSEEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 18 vilpfsksftaivGpNGSGKsnlldAil 45
                  l  ++ + a+ G+ GSGKs+l++A+ 
  KIR64496.1 61 LALSRDHTVVALAGATGSGKSSLFNALA 88
                556667888999**************84 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00028      0.33       2      22 ..      70      90 ..      69     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00028
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                 +l G+ gsGKS+L+ al  +
  KIR64496.1 70 VALAGATGSGKSSLFNALARF 90
                6899**************654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 3839.10
//
Query:       KIR64497.1  [L=615]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-07   30.5   0.2    0.00012   22.2   0.3    2.2  2  Dynamin_N      Dynamin family
    0.00076   19.5   0.0     0.0015   18.6   0.0    1.6  1  MMR_HSR1       50S ribosome-binding GTPase
      0.001   18.4   1.5     0.0012   18.2   0.0    1.8  2  Zeta_toxin     Zeta toxin
     0.0025   17.8   0.0     0.0044   16.9   0.0    1.3  1  RsgA_GTPase    RsgA GTPase
  ------ inclusion threshold ------
      0.034   13.8   0.4      0.069   12.7   0.4    1.5  1  cobW           CobW/HypB/UreG, nucleotide-binding domain
      0.035   14.5   0.4      0.035   14.5   0.4    3.6  3  AAA_16         AAA ATPase domain
      0.049   12.7   0.0       0.11   11.5   0.0    1.5  1  T2SSE          Type II/IV secretion system protein
      0.049   14.1   0.0      0.082   13.4   0.0    1.3  1  ABC_tran       ABC transporter
      0.051   13.6   0.0       0.11   12.5   0.0    1.5  1  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
      0.057   13.6   0.4       0.32   11.2   0.4    2.1  1  AAA_33         AAA domain
      0.068   12.4   0.0      0.099   11.9   0.0    1.1  1  Septin         Septin
      0.077   13.1   0.2       0.16   12.1   0.2    1.4  1  DUF87          Helicase HerA, central domain
       0.15   12.3   0.0       0.45   10.8   0.0    1.8  1  AAA_22         AAA domain
        5.6    7.1   5.4         29    4.8   0.2    2.8  2  Gas_vesicle_C  Gas vesicles protein GVPc repeated domain


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.3   9.5e-08   0.00012       1      42 [.      91     133 ..      91     143 .. 0.88
   2 ?    5.8   0.0      0.01        13      97     140 ..     166     209 ..     147     233 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 9.5e-08
                 EEEEEBTTTTHHHHHHHHHTS--S---SS.S---S-EEEEECC CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpn.ptTrrplelqlge 42 
                 ++v Gs+ +GKS+++n+L+++++   g   ptTr p+ ++   
  KIR64497.1  91 VVVGGSTGAGKSTLVNSLVQARVSAAGVLrPTTRSPVLVCNPA 133
                 7899*********************99977******9887655 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.01
                 ETTS-SEEEEE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS CS
   Dynamin_N  97 sllvkgltlvDlPGldsvnkrdqelvkeyikkadiilavtsanh 140
                 + l  gl ++D P +dsv + + +l+ +++  ad+ l+vt a  
  KIR64497.1 166 PALPAGLAFLDAPDIDSVVDANRALAGQLLAAADLWLFVTTAAR 209
                 5677899*********************************9876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.2e-06    0.0015       2      39 ..      91     129 ..      90     252 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.2e-06
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdineg 39 
                 v++ G + +GKStL+n+l+++ ++ ++    tTr ++  
  KIR64497.1  91 VVVGGSTGAGKSTLVNSLVQArVSAAGVLRPTTRSPVLV 129
                 67889***************9445667777999988765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   9.3e-07    0.0012      14      39 ..      86     111 ..      76     120 .. 0.83
   2 ?   -3.0   0.5       2.9   3.7e+03     135     174 ..     543     588 ..     536     593 .. 0.51

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9.3e-07
  Zeta_toxin  14 erPklillgGqpGAGKselaellkde 39 
                 + P l+++gG++GAGKs+l + l ++
  KIR64497.1  86 DAPLLVVVGGSTGAGKSTLVNSLVQA 111
                 78*****************9988765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.9
  Zeta_toxin 135 lSrlgvldRyeeevae......gRlvpkeehdeafeglresveale 174
                  +r ++l+R++e +++       R +  +   +a e+lr ++e++e
  KIR64497.1 543 KARGDLLARVRELLDAeatrflSRTATARPAADAGEALRTAAERVE 588
                 5566667777777333333343344444444445555555555554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.5e-06    0.0044     100     125 ..      89     114 ..      61     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.5e-06
                  SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelel 125
                   ++v+ G++G+GKStL+n+l++    
   KIR64497.1  89 LLVVVGGSTGAGKSTLVNSLVQARVS 114
                  56788899************987554 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   5.4e-05     0.069       2      24 ..      90     112 ..      89     118 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.4e-05
                 EEEEEESTTCCHHHHHHHHHCT- CS
        cobW   2 vtvltGflGsGKTtLlnhllenr 24 
                  +v++G+ G+GK+tL+n+l++ r
  KIR64497.1  90 LVVVGGSTGAGKSTLVNSLVQAR 112
                 579****************9876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.4   2.7e-05     0.035      20      51 ..      84     115 ..      68     265 .. 0.80
   2 ?   -1.3   1.7       1.9   2.5e+03     106     127 ..     375     421 ..     283     430 .. 0.52
   3 ?    4.7   0.2     0.027        35      70     117 ..     525     578 ..     484     605 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.7e-05
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekd 51 
                 r + p lv++ G  G GKs+lv++l +a   +
  KIR64497.1  84 RLDAPLLVVVGGSTGAGKSTLVNSLVQARVSA 115
                 4455699***************9998643333 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.9
      AAA_16 106 a.........................avpelagaeasrllellkrll 127
                 +                         ++ el++a++s+l  ll+  +
  KIR64497.1 375 EffrtlearigrlrdrllaavtgrpaPATELRDAIESQLVTLLRGVA 421
                 03333333333333333333335555666666666677777766666 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.027
      AAA_16  70 salaqalareellrqlldeaesaeleawrekleeala.........avpelagaeas 117
                 +a++qa++ ++ +r l+++a+ ++l++ re l+++++           p++++   +
  KIR64497.1 525 QAVLQAIFGDQAVRTLAAKARGDLLARVRELLDAEATrflsrtataR-PAADAG--E 578
                 55899999999999999999999999999999999988888765431.222222..2 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.5e-05      0.11     129     151 ..      88     110 ..      66     117 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.5e-05
       T2SSE 129 rglilvsGgTgsGKttllyallk 151
                   l++v G Tg GK+tl+++l++
  KIR64497.1  88 PLLVVVGGSTGAGKSTLVNSLVQ 110
                 57899***************997 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.4e-05     0.082      14      40 ..      91     117 ..      84     191 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.4e-05
                 EEEEESTTSSHHHHHHHHTTSS--SEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkpteG 40 
                 v++ G++GaGKStL++ l +    ++G
  KIR64497.1  91 VVVGGSTGAGKSTLVNSLVQARVSAAG 117
                 67789************9987666666 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.5e-05      0.11       3      45 ..      59     114 ..      57     127 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.5e-05
                 SHHHHHHHHHHHHHCHTEE.............EEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE   3 seeetealgkklakalgdv.............ilLeGdLGaGKTtlvrglakalgv 45 
                 s+e+ +++g++l+++l d              ++  G  GaGK+tlv +l++a   
  KIR64497.1  59 SAEAARQIGASLTAQLDDYllprlarldapllVVVGGSTGAGKSTLVNSLVQARVS 114
                 6788888999998888333345556667777799****************998643 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   0.00025      0.32       1      23 [.      90     112 ..      90     125 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00025
      AAA_33   1 lvllvGlpGsGKstlaerllkkl 23 
                 lv++ G  G+GKstl+ +l++++
  KIR64497.1  90 LVVVGGSTGAGKSTLVNSLVQAR 112
                 79999**************9875 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.7e-05     0.099       6      32 ..      90     116 ..      86     127 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.7e-05
                 EEEEEEBTTSSCCCCCCTTSSSS---- CS
      Septin   6 tlmvvGesglGkttlintlfetdliee 32 
                  ++v G+ g Gk+tl+n+l++ ++  +
  KIR64497.1  90 LVVVGGSTGAGKSTLVNSLVQARVSAA 116
                 46777899************9987765 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   0.00012      0.16      29      49 ..      94     114 ..      91     130 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
       DUF87  29 lgsTGsGKSntvavLleelle 49 
                  gsTG+GKS++v +L++  ++
  KIR64497.1  94 GGSTGAGKSTLVNSLVQARVS 114
                 59**************98775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00035      0.45       7      51 ..      90     136 ..      84     163 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee..erpevvfvtlpsst 51 
                 ++vv G +G+GK+tl++ l++  + +a   +   r++v+ ++++ s+
  KIR64497.1  90 LVVVGGSTGAGKSTLVNSLVQARVSAAGVLRptTRSPVLVCNPADSG 136
                 5678899*************998765544447666666666666655 PP

>> Gas_vesicle_C  Gas vesicles protein GVPc repeated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2     0.023        29       7      19 ..     559     571 ..     555     573 .. 0.83
   2 ?    3.2   1.0     0.069        88      15      23 ..     582     590 ..     581     592 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.023
  Gas_vesicle_C   7 etqeFLseTakaR 19 
                    e   FLs Ta+aR
     KIR64497.1 559 EATRFLSRTATAR 571
                    6678********9 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.069
  Gas_vesicle_C  15 TakaRtaQA 23 
                    Ta++R++QA
     KIR64497.1 582 TAAERVEQA 590
                    9*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 4215.96
//
Query:       KIR64498.1  [L=618]
Description: molecular chaperone DnaK [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.8e-243  809.2   8.0     2e-214  713.3   2.5    2.0  2  HSP70     Hsp70 protein
    4.1e-17   62.0   1.8      2e-16   59.7   1.8    2.1  1  MreB_Mbl  MreB/Mbl protein
     0.0026   17.0   0.0       0.68    9.1   0.0    2.6  3  StbA      StbA protein
     0.0087   16.5   1.8       0.95    9.9   0.3    3.6  2  FtsA      Cell division protein FtsA


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.4   1.4e-32   6.3e-29       1      74 [.       4      78 ..       4      82 .. 0.97
   2 !  713.3   2.5  4.4e-218    2e-214     100     598 ..      78     575 ..      75     576 .. 0.99

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 1.4e-32
                EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTT.SEEETHHHHHCTTTTGGGEEEXGGGTTTXBTT CS
       HSP70  1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvKrliGrkfs 74
                ++GiDLGttns+v+v+egg+++vian+eg+rttPs+vaF+++ e lvGe+Akrqavtnp++t+ svKr iG++++
  KIR64498.1  4 AVGIDLGTTNSCVSVLEGGEPTVIANAEGSRTTPSIVAFARNgEVLVGEVAKRQAVTNPDRTIRSVKREIGTNWT 78
                59*********************************************************************9986 PP

  == domain 2  score: 713.3 bits;  conditional E-value: 4.4e-218
                 EEEETTEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSSXE CS
       HSP70 100 eveaagekftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGggtf 198
                 +v++ g+k+tp++isa+ L+klk++aeaylg+++tdavitvPaYfnd qRqatk+Ag+iAG+nvlRivNepTAaalaYGldk +ke++vlv+DlGggtf
  KIR64498.1  78 TVDIDGKKYTPQEISARTLMKLKRDAEAYLGEQITDAVITVPAYFNDGQRQATKEAGEIAGFNVLRIVNEPTAAALAYGLDKGSKEQTVLVFDLGGGTF 176
                 56778********************************************************************************************** PP

                 EEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTT.EEEEEEEEHH CS
       HSP70 199 dvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedg.kdlseklsRa 296
                 dvS+lel +Gv+evk+T+gD++lGG+d+D+++++hlv++f+ ++gidl++dk+alqrl+eaaekaK+eLS+++ t+inl+++t+ ++g  +l+++lsRa
  KIR64498.1 177 DVSLLELAEGVVEVKSTSGDNQLGGDDWDQRIIDHLVKTFRGEHGIDLAQDKMALQRLREAAEKAKIELSAATTTNINLPYITAGSAGpLHLDVTLSRA 275
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEEBESS-EE CS
       HSP70 297 kfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdllllDvtpLslg 395
                 +f+++++dll+r++ p+e+a+kda++k+ ++d+v+lvGGstR+P+v++lvk+l+g++p+k+vnpDe+va+GAA+qagvl+g  evkd+lllDvtpLslg
  KIR64498.1 276 EFQRMTQDLLDRCKGPFEQAVKDAGIKVADVDHVILVGGSTRMPAVTDLVKQLTGRDPNKGVNPDEVVAVGAALQAGVLKG--EVKDVLLLDVTPLSLG 372
                 *********************************************************************************..**************** PP

                 EEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTCCEEEE CS
       HSP70 396 ietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketgkeeei 494
                 iet+gg++tkliernttiptk+s+vf+ta+dnq++v i+v+qgere++++nk+lg+fel+g+ppaprGvpqieVtfdidanGi++v+akd +tgke+++
  KIR64498.1 373 IETKGGIFTKLIERNTTIPTKRSEVFTTADDNQPSVLIQVFQGEREIAAYNKKLGTFELTGLPPAPRGVPQIEVTFDIDANGIVNVHAKDLGTGKEQKM 471
                 *************************************************************************************************** PP

                 EEECCSSSBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHCHTTSSCHHHHHHHHHHHHHHHHHH CS
       HSP70 495 tieaseglseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleeeaekvseaekekvesaieeLkeeleeeekeeieakteelkkvveki 593
                 ti+  ++l++e+ie+m +daee+a++dk+++e++e++n ae+l  ++ek l+e+++k++ +++e++++a+ eL+ +l ++++++i+a+ e+l++v+++ 
  KIR64498.1 472 TITGGSSLPKEDIERMRRDAEEHADDDKRRREEAETRNVAEALQWQTEKFLAESGDKLPGENREQLNEALGELRGALGGQDIDKIKAAHEKLAQVSQQA 570
                 *************************************************************************************************98 PP

                 HHHHH CS
       HSP70 594 aekly 598
                 ++ ly
  KIR64498.1 571 GSLLY 575
                 87665 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   1.8   4.5e-20     2e-16       3     316 ..       4     348 ..       2     356 .. 0.70

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 4.5e-20
                 EEEEEE-SSEEEEEETTTE...EEEE......EES-EEEETTT--EEEESHHHHTT.TTS-GTTEEEE.-SEETTEESSHH...HH.HHHHHHHHHHHH CS
    MreB_Mbl   3 dlgiDLGtantlvyvkgkg...ivln......epsvvAikkktkkvlavGeeAkkm.lgktpgnikav.rPlkdGviadle...va.eellkyfikkvk 86 
                  +giDLGt+n  v v + g   ++ n       ps+vA+ ++ +  + vGe Ak+  +    ++i+ v r +     +d++   ++ +e+  + + k+k
  KIR64498.1   4 AVGIDLGTTNSCVSVLEGGeptVIANaegsrtTPSIVAFARNGE--VLVGEVAKRQaVTNPDRTIRSVkREIGTNWTVDIDgkkYTpQEISARTLMKLK 100
                 69*********998765553324443333333589999887654..34899998651444555676552455555566665112221222222333333 PP

                 T.SS-S...S--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--T.TSSS-EEEEEE-SS-EEEEEEETT.EEEEEEEE....S- CS
    MreB_Mbl  87 k.kksl...skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpv.eepsgnmvvdiGggttevavislg.givtsksv....rv 175
                 + ++++   + +  vi+vP   ++ +r+A kea + aG +   +++ep aAA+  gl+  ++ +  +v d+Gggt +v+++ l+ g+v+ ks     ++
  KIR64498.1 101 RdAEAYlgeQITDAVITVPAYFNDGQRQATKEAGEIAGFNVLRIVNEPTAAALAYGLDKgSKEQTVLVFDLGGGTFDVSLLELAeGVVEVKSTsgdnQL 199
                 32333323356678*******************************************972466778999************985389988886444479 PP

                 SHHHHHHHHHHHHHHHHSEE--HHHHHHHHHHH-BSS--HHHH........EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-H CS
    MreB_Mbl 176 aGdeldeaiikyirkkynlliGertaekikieigsavkeeeee........kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektpp 266
                 +Gd++d+ ii+++ k+++   G   a++ k+++  + + +e+         +++i+   ++ g +  ++++ +  r   + + + +++  k   e++  
  KIR64498.1 200 GGDDWDQRIIDHLVKTFRGEHGIDLAQD-KMALQRLREAAEKAkielsaatTTNINLPYITAGSAGPLHLDVTLSRAEFQRMTQDLLDRCKGPFEQAVK 297
                 ***********99888887777766654.4444444444444411122223555555666677777777777777788888888888888888888888 PP

                 HHHHHHHH.H-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHH CS
    MreB_Mbl 267 eLaadivd.rgivltGGgallkgldkllseetglpvkvaedpltcvakGtg 316
                 +    ++d   ++l+GG++ +  + +l+++ tg   + + +p ++va G++
  KIR64498.1 298 DAGIKVADvDHVILVGGSTRMPAVTDLVKQLTGRDPNKGVNPDEVVAVGAA 348
                 887777773468999******************999999999999999986 PP

>> StbA  StbA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.4   6.5e+03      48      64 ..      80      96 ..      74      98 .. 0.80
   2 !    9.1   0.0   0.00015      0.68     158     209 ..     159     212 ..     129     256 .. 0.69
   3 !    5.2   0.0    0.0024        11     249     294 ..     283     330 ..     261     346 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.4
        StbA 48 lidgekysfdslssdav 64
                 idg+ky+ +++s++++
  KIR64498.1 80 DIDGKKYTPQEISARTL 96
                5899****999998865 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00015
        StbA 158 eldeleslLiiDlGGttLDvakvr..gklegiskvkgdskiGvslitdavkeal 209
                 + ++ + +L+ DlGG t Dv+ ++    + ++  + gd+++G     + + + l
  KIR64498.1 159 KGSKEQTVLVFDLGGGTFDVSLLElaEGVVEVKSTSGDNQLGGDDWDQRIIDHL 212
                 44667889************9765114455666677888888766666665555 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0024
        StbA 249 evinekvkkLkerviravsefsgythvmvvGGGael..iaeaikkate 294
                 + +++ +   ++ v++a  +++++ hv++vGG + +  +++ +k+ t+
  KIR64498.1 283 DLLDRCKGPFEQAVKDAGIKVADVDHVILVGGSTRMpaVTDLVKQLTG 330
                 5566666778999999999*************9987658888998876 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.3   0.00021      0.95       1      85 [.       5     241 ..       5     350 .. 0.62
   2 ?   -0.3   0.1      0.32   1.4e+03      34      71 ..     481     549 ..     453     607 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00021
                 EEEEE-SSSEEEEEEETTEEEEEEEES--HHHHHHHHHHHHT--HHHHHHHHHHH--S--.........................EEEEEHHHHH.... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxx.... RF
        FtsA   1 alvDiGagktdvavaedgalvhlrvigvggngitkdiakalrtaveeAerikikyGsala.........................ekeigrkels.... 70 
                 +++D+G++ ++v+v+e+g+++   + + +g+  t +i+   r+      +++++ ++ ++                         ++ei     s    
  KIR64498.1   5 VGIDLGTTNSCVSVLEGGEPTV--IANAEGSRTTPSIVAFARNGEVLVGEVAKRQAVTNPdrtirsvkreigtnwtvdidgkkytPQEI-----Sartl 96 
                 689**************97654..22224444444433322222222222222222222222222222222222224444433333333.....23333 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        FtsA  71 ................................................................................................... 70 
                                                                                                                    
  KIR64498.1  97 mklkrdaeaylgeqitdavitvpayfndgqrqatkeageiagfnvlrivneptaaalaygldkgskeqtvlvfdlgggtfdvsllelaegvvevkstsg 195
                 366666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 PP

                 ...............................GGGGSTTHHHHHHHH CS
                 ...............................xxxxxxxxxxxxxxx RF
        FtsA  71 ...............................ggsalpnleelaera 85 
                                                ++ al+ l+e+ae+a
  KIR64498.1 196 dnqlggddwdqriidhlvktfrgehgidlaqDKMALQRLREAAEKA 241
                 6666666666666666666666666666666555555555555555 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.32
                 HHHHHHHHT--HHHHHHHHHHH--S--EEEEEHHHHH.....................................G CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................................x RF
        FtsA  34 tkdiakalrtaveeAerikikyGsalaekeigrkels.....................................g 71 
                 ++di+++ r a e A   k++          ++++++                                     g
  KIR64498.1 481 KEDIERMRRDAEEHADDDKRRREE------AETRNVAealqwqtekflaesgdklpgenreqlnealgelrgalG 549
                 555777777777777777733222......222222233334444444444444444444444455555555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.49
# Mc/sec: 3776.60
//
Query:       KIR64499.1  [L=247]
Description: molecular chaperone GrpE [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-34  119.2   0.0      2e-34  118.7   0.0    1.2  1  GrpE      GrpE


Domain annotation for each model (and alignments):
>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   0.0   1.1e-38     2e-34      15     165 ..     101     244 ..      93     245 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.7 bits;  conditional E-value: 1.1e-38
                 CCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC..HHH-HHHHHHHHHHHHHHHHHHHHHTT-EE CS
        GrpE  15 eeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfaiekfakdLLpvlDnleralksakeneeekslleGvemtlkqllkiLekhgvek 113
                 + l +ele+l++e++e + +l+r  ae+ n+rkr++++++ +++ a  +++ +LLp+lD+l+ra ++        +l+  +  +++ql ++L k+g+  
  KIR64499.1 101 APLGAELEALRAELDERTRDLQRVTAEYANYRKRVDRDRSLVQEQATGSVLAALLPILDDLDRAREH-------GDLVGPFGTVAEQLTTALGKFGLSA 192
                 66899************************************************************98.......699********************** PP

                 ---TTSB--TTTEEEEEEECSSC...TBEEEEEE--EEETTEEEE-EEEEEE CS
        GrpE 114 iepkgepFDpnlheavstveddekeegtvvevvqkGYklkdrvlRpAmVkVs 165
                 +  +g+pFDp+ heav +++++++ e t v+v+++GY+l++r+lRpAmV V+
  KIR64499.1 193 FGEQGDPFDPTRHEAVAHQTSADVTEPTCVQVMRRGYQLGERLLRPAMVAVA 244
                 ***************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1892.80
//
Query:       KIR64500.1  [L=395]
Description: molecular chaperone DnaJ [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-35  122.3   0.0    2.3e-35  121.9   0.0    1.2  1  DnaJ_C           DnaJ C terminal domain
    2.7e-25   88.3   0.4    3.9e-25   87.8   0.4    1.2  1  DnaJ             DnaJ domain
    3.5e-12   46.5  16.3    6.1e-12   45.7  16.3    1.4  1  DnaJ_CXXCXGXG    DnaJ central domain
     0.0046   16.9  18.5       0.23   11.4   4.7    2.5  2  Anti-TRAP        Tryptophan RNA-binding attenuator protein in
  ------ inclusion threshold ------
      0.032   14.5   3.3        2.4    8.5   0.0    2.8  2  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
        2.3    7.7   4.5        2.4    7.6   0.2    2.5  2  zf_Rg            Reverse gyrase zinc finger
        3.6    8.1   6.1         32    5.1   4.6    2.3  1  Cytochrom_c3_2   Cytochrome c3
        6.5    6.6   6.6       0.99    9.2   1.7    2.2  2  A2L_zn_ribbon    A2L zinc ribbon domain
          7    6.9  19.1         11    6.3   0.1    4.4  4  DUF5351          Family of unknown function (DUF5351)


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   0.0   1.1e-38   2.3e-35       1     148 []     149     361 ..     149     361 .. 0.96

  Alignments for each domain:
  == domain 1  score: 121.9 bits;  conditional E-value: 1.1e-38
                 EEEEEEE-HHHHHH-.EEE.EEEE.....................................................................TEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx..............................................................xxxxxxxxxx RF
      DnaJ_C   1 ieveleisleelykGktkkikikrnvi..............................................................kkekktlevk 37 
                 ie+e+ +++ ++++G+t  ++++   i                                                              +++++tl+v+
  KIR64500.1 149 IETEVALDFGDAVRGVTLPLTLRAPGIcdtcagsgakpgtspvtcqvchgagvtnrnqgsfsfsepcrncqgvgtvveekcpechgtggVTKTRTLNVR 247
                 78999**************9998887899999********************************************************988888***** PP

                 E-TT--TT-EEEETT-SS..SS..S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEEEEEE-SS-EEEEEE...--TT-EEEETT-S-EET. CS
                 xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx RF
      DnaJ_C  38 ipaGikdgqkirlegeGd..eeggepGDlivtikvkphpvFkrkgndlyveveislaeallGgklevptldgkvklki...tqpgevlrikgkGmpklk 131
                  paG+ dgq+irl+g+G+  e+gg++GDl+v++kv+p++ F r+g+dl ++v+i++ ea+lG+ l+vptldg+v+l++   t +g+vlr +gkG+ +  
  KIR64500.1 248 FPAGVADGQRIRLNGRGEpgERGGPAGDLYVHVKVRPDELFGRTGDDLTLTVPITFPEAVLGTDLRVPTLDGTVTLRVppgTPSGRVLRARGKGVVRR- 345
                 ******************98888************************************************************************998. PP

                 ..TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxxxxx RF
      DnaJ_C 132 kpgkrGdlyvevkvefP 148
                  +gk Gdl+v+++v++P
  KIR64500.1 346 -DGKAGDLLVTLDVVVP 361
                 .6*************99 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.4   1.9e-28   3.9e-25       1      63 []      10      72 ..      10      72 .. 0.99

  Alignments for each domain:
  == domain 1  score: 87.8 bits;  conditional E-value: 1.9e-28
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                dyY+ Lgv+k+as+deIkk+Yrkla++ HPD np+d+ aee+Fk ++eAy vL d+ kR++YD
  KIR64500.1 10 DYYATLGVQKSASSDEIKKSYRKLARESHPDHNPGDSGAEERFKAVSEAYAVLGDEAKRREYD 72
                8*************************************************************9 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7  16.3   3.1e-15   6.1e-12       1      67 []     176     236 ..     176     236 .. 0.85

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 3.1e-15
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgk.kktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGtGkvikekdkCkkCkGkg 67 
                    C++C Gsgak+g+ + tC+ C+G Gv++++q   g+f   ++++C++C+G G+v+  ++kC++C+G+g
     KIR64500.1 176 CDTCAGSGAKPGTsPVTCQVCHGAGVTNRNQ---GSFS--FSEPCRNCQGVGTVV--EEKCPECHGTG 236
                    **********977799*********766655...3433..679************..667******86 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   4.7   0.00012      0.23      13      48 ..     176     208 ..     173     212 .. 0.93
   2 !   11.3   5.5   0.00013      0.26      11      41 ..     213     237 ..     209     243 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                 -TTTTTTSEETTE......E-TTTTTSSEEE-HHHH CS
   Anti-TRAP  13 CdaCngsGkiepeeprasleCPkCsGkglipTaqGq 48 
                 Cd+C gsG  +++   + + C  C G g+   +qG+
  KIR64500.1 176 CDTCAGSGAKPGT---SPVTCQVCHGAGVTNRNQGS 208
                 *************...889**********9999986 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00013
                 EE-TTTTTTSEETTE......E-TTTTTSSE CS
   Anti-TRAP  11 tkCdaCngsGkiepeeprasleCPkCsGkgl 41 
                 ++C +C+g G +  e      +CP+C G g 
  KIR64500.1 213 EPCRNCQGVGTVVEE------KCPECHGTGG 237
                 79*************......*******974 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   1.2     0.014        29      13      23 ..     192     202 ..     187     218 .. 0.80
   2 ?    8.5   0.0    0.0012       2.4       9      24 ..     224     239 ..     219     273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.014
  Cytochrome_CBB3  13 nCasCHgkgga 23 
                      +C+ CHg+g  
       KIR64500.1 192 TCQVCHGAGVT 202
                      7******6643 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0012
  Cytochrome_CBB3   9 lykknCasCHgkggag 24 
                      + +++C  CHg+gg+ 
       KIR64500.1 224 VVEEKCPECHGTGGVT 239
                      56789******99987 PP

>> zf_Rg  Reverse gyrase zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.7      0.16   3.2e+02       6      15 ..     211     220 ..     209     221 .. 0.86
   2 ?    7.6   0.2    0.0012       2.4       3      16 ..     222     235 ..     221     243 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.16
       zf_Rg   6 feklCPNCgG 15 
                 f++ C NC+G
  KIR64500.1 211 FSEPCRNCQG 220
                 678899**99 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0012
       zf_Rg   3 kavfeklCPNCgGd 16 
                   v+e+ CP C+G 
  KIR64500.1 222 GTVVEEKCPECHGT 235
                 5799********95 PP

>> Cytochrom_c3_2  Cytochrome c3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   4.6     0.016        32       7      36 ..     191     236 ..     187     247 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.016
                     .TGGGTSSSST-SSTT.HHHHHH...............HHHHH--H CS
  Cytochrom_c3_2   7 vkCadCHtkekpkkdk.aveeek...............ClsCHgkl 36 
                     v+C+ CH+   +++++ + + ++               C +CHg+ 
      KIR64500.1 191 VTCQVCHGAGVTNRNQgSFSFSEpcrncqgvgtvveekCPECHGTG 236
                     6788888866654444344444465566666666666677777665 PP

>> A2L_zn_ribbon  A2L zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.7    0.0005      0.99       3      20 ..     190     207 ..     188     221 .. 0.82
   2 ?   -1.5   0.2       1.1   2.3e+03      23      27 ..     228     232 ..     226     236 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0005
  A2L_zn_ribbon   3 lkvCsvCggngilnseqg 20 
                    +++C vC+g g+ n++qg
     KIR64500.1 190 PVTCQVCHGAGVTNRNQG 207
                    789***********9998 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
  A2L_zn_ribbon  23 vCieC 27 
                     C+eC
     KIR64500.1 228 KCPEC 232
                    47777 PP

>> DUF5351  Family of unknown function (DUF5351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.6       0.1     2e+02      20      28 ..     176     184 ..     175     185 .. 0.83
   2 ?    5.3   0.4     0.012        23      19      28 ..     192     201 ..     190     202 .. 0.90
   3 ?    6.3   0.1    0.0056        11      17      28 ..     212     223 ..     211     224 .. 0.92
   4 ?    3.4   2.0     0.045        90      18      27 ..     227     236 ..     226     238 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.1
     DUF5351  20 CesCeGtgk 28 
                 C+ C G+g 
  KIR64500.1 176 CDTCAGSGA 184
                 999999986 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.012
     DUF5351  19 TCesCeGtgk 28 
                 TC+ C+G+g+
  KIR64500.1 192 TCQVCHGAGV 201
                 9******996 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0056
     DUF5351  17 SETCesCeGtgk 28 
                 SE C  C+G g+
  KIR64500.1 212 SEPCRNCQGVGT 223
                 89*******997 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.045
     DUF5351  18 ETCesCeGtg 27 
                 E C++C+Gtg
  KIR64500.1 227 EKCPECHGTG 236
                 78******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2598.37
//
Query:       KIR64501.1  [L=144]
Description: MerR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-14   52.8   0.0    4.7e-14   52.2   0.0    1.2  1  MerR_1        MerR HTH family regulatory protein
    7.1e-10   38.5   0.1    1.6e-09   37.4   0.1    1.6  1  MerR          MerR family regulatory protein
    0.00098   18.9   0.1     0.0014   18.5   0.1    1.3  1  MerR_2        MerR HTH family regulatory protein
  ------ inclusion threshold ------
      0.026   14.7   1.3      0.044   14.0   1.3    1.3  1  ABC_tran_CTD  ABC transporter C-terminal domain
      0.044   14.4   0.1      0.086   13.5   0.1    1.5  1  SlyX          SlyX


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   1.3e-17   4.7e-14       2      66 ..      19      84 ..      18      86 .. 0.95

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 1.3e-17
                EHHHHHHHHTS-HHHHHHHHHHTT-S-EE-TTS-EEEEHHHHHHHHHHHHHHH.TT--GGG---XX CS
      MerR_1  2 sigevakilgvtthtlrywekegllkpkrteggrryYtdedierLklikyLlk.rGltlkgikkll 66
                 i+ +a+++g+ + tlr +++ gl++  r  gg r+Y+ +d+  L+ +++L + +G++l+g+k+++
  KIR64501.1 19 MISVAARMAGMHPQTLRQYDRLGLVQAGRAAGGGRRYSVRDVVLLREVQRLSQdEGVNLAGVKRII 84
                5899*************************77777*****************************986 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.1   4.4e-13   1.6e-09       2      38 .]      20      55 ..      20      55 .. 0.98

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 4.4e-13
                HHHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSSEEE CS
        MerR  2 IgevAeltGvsprtLRyYEreGLipppeRtegGyRlY 38
                I+ +A+++G++p+tLR Y+r GL+ ++ R +gG R+Y
  KIR64501.1 20 ISVAARMAGMHPQTLRQYDRLGLV-QAGRAAGGGRRY 55
                899*********************.***********9 PP

>> MerR_2  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   3.8e-07    0.0014      10      83 ..      27     101 ..      18     102 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.8e-07
      MerR_2  10 tgieeeflieLvelgliepeiee.eewyfdesqlarlekavRLqrDLeinleGiavildLLdrieqLqrelesLr 83 
                  g +++ l +   lgl++  + +   ++ + +++  l+ ++RL +D ++nl+G++ i+ L + +eq q+++++L+
  KIR64501.1  27 AGMHPQTLRQYDRLGLVQAGRAAgGGRRYSVRDVVLLREVQRLSQDEGVNLAGVKRIIGLERLLEQAQQRIARLE 101
                 677888889999999***9777747888*******************************9999999999999986 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.3   1.2e-05     0.044      43      68 ..      90     115 ..      84     116 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
  ABC_tran_CTD  43 laelsaeleeleaeLeelyerWeeLe 68 
                   l ++++++++leaeL+++y r  eLe
    KIR64501.1  90 LEQAQQRIARLEAELDAAYRRVAELE 115
                   67899****************99998 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   2.4e-05     0.086      22      53 ..      86     117 ..      81     127 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX  22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53 
                 L + + + qq+i+rl+++l++ ++r++ele+ 
  KIR64501.1  86 LERLLEQAQQRIARLEAELDAAYRRVAELESL 117
                 67777889********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1120.76
//
Query:       KIR64502.1  [L=90]
Description: hypothetical protein TK50_02195 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.031   14.6   1.0      0.059   13.7   0.1    1.8  2  MT0933_antitox  MT0933-like antitoxin protein


Domain annotation for each model (and alignments):
>> MT0933_antitox  MT0933-like antitoxin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   3.3e-06     0.059       3      42 ..       4      43 ..       3      47 .. 0.94
   2 ?   -1.2   0.1      0.15   2.7e+03      39      46 ..      57      64 ..      53      74 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.3e-06
  MT0933_antitox  3 KakdlaekhedkvdqgiDKAgdavddktGgKysdkIdkgq 42
                     ak  a+++e+  d++   A +  d+ t g + dk+  g+
      KIR64502.1  4 QAKKVAQQAEERLDRVARSARQRFDKITEGRFTDKVREGR 43
                    599*********************************9997 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.15
  MT0933_antitox 39 dkgqdaak 46
                    d+g ++a+
      KIR64502.1 57 DQGSGQAD 64
                    45555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 759.30
//
Query:       KIR64503.1  [L=143]
Description: hypothetical protein TK50_02200 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1009.93
//
Query:       KIR64504.1  [L=402]
Description: potassium transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-50  172.4  44.2    1.5e-50  172.1  44.2    1.0  1  Na_H_Exchanger  Sodium/hydrogen exchanger family


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.1  44.2   8.4e-55   1.5e-50       5     379 ..      14     373 ..       9     376 .. 0.89

  Alignments for each domain:
  == domain 1  score: 172.1 bits;  conditional E-value: 8.4e-55
                     HHHHHHHHH...HHHHTTSXHHHHHHHHHHHHTTTTTS......HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   5 illallvgl...larrlklpeivgliiaGlllGpsglg.liepseedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvliG 95 
                     +l ++l+gl   l rr++l++i+++++aGl++G  g+  l ++  e + v +e+g+illl  +Gle +  el  nl+s+   +l+  +++++  G
      KIR64504.1  14 AL-LFLLGLlgrLGRRIGLSPIPLYLLAGLVFGHGGVLpLTASE-EFFAVGAEIGVILLLVMLGLEYSAGELVGNLRSAAPAGLIDGVFNALP-G 105
                     34.4444444867**********************999456665.************************************************.9 PP

                     HHHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXHHHHHHHHHHHH CS
  Na_H_Exchanger  96 lllylllilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeaggetslllllliflvvavgg 190
                      ++++  +lg+++++a+++++i  +++ +v++++l+++gr+ +r   ++l+++v++D+++ ++l +l a++  ++g   + ++l++++ +v++++
      KIR64504.1 106 AAFAF--LLGWDWVAAIVLAGITWVSSSGVIAKVLADLGRLGNRETPVVLSVLVIEDLAMALYLPLLTAVL-AGTGLLGGGIALGVAVGTVVLVL 197
                     99996..6899***********************************************************9.44444455555555555555555 PP

                     HHHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHSXHHH CS
  Na_H_Exchanger 191 lllglvigwllrlitrftdddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnklseklesfreglfnplfFvlvGlsldlkv 285
                     +++ +   ++++ +++   +d+e  +l+vl l ll+a++a +l+vs+++gafl+G++ls+   ++ ++e l+++r +lf+ +fFv++Gl +d+  
      KIR64504.1 198 VVAIRYGHLISSALSA---KDPEALLLGVLGLTLLVAGIAAKLQVSAAVGAFLVGIALSGPVAHH-ATEMLSPLR-DLFAAVFFVFFGLVTDPRD 287
                     5555555555555444...7***************************************555555.9999*****.9****************** PP

                     HHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTXSSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTTSSTTTCSTSXHHHHHHHHHHHHH CS
  Na_H_Exchanger 286 lnnhlsvlilvllilvaillgrilavflllrllglslrealiigfgglqrgavalalaalgpalgllarelyallivvvlftvlvqGlslkpll 379
                     +   + vl+ +l++ v+ + +++l+++l++r++g+    ++ +g+++++rg++++++a l+ a+g  + +l al++++vl+tv+     + p+l
      KIR64504.1 288 I---PPVLLPALALAVVTMGTKTLTGYLAARRVGIKEPGRWRAGLALVPRGEFSIVIAGLAVAAGSVEPKLAALATAYVLITVV-----TGPML 373
                     *...999999999999999*****************************************************************.....77666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2714.17
//
Query:       KIR64505.1  [L=166]
Description: potassium transporter TrkA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-15   56.6   0.2    3.3e-15   55.7   0.2    1.4  1  TrkA_C    TrkA-C domain
  ------ inclusion threshold ------
       0.17   11.6   0.1       0.28   10.9   0.1    1.3  1  Cupin_3   Protein of unknown function (DUF861)


Domain annotation for each model (and alignments):
>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.2   3.6e-19   3.3e-15       3      69 ..      91     159 ..      90     160 .. 0.95

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 3.6e-19
                 EEEEE--GGGTTSBHHHHTHHHH.S-EEEEEE-T.-EEES--TT-B--TT-EEEEEEEHHHHHHHHHHH CS
      TrkA_C   3 evtvpagsplvGktlkelnlrar.gvlvvairRg.geliipsgdtvLeeGDvllvvgspsdlaelrell 69 
                 ++++pags++v+++l++ + r+r ++ +va+ R+ +++++p++ +++ +GDv++vvg++++l+ ++++l
  KIR64505.1  91 QIAIPAGSKYVHRRLGDTKARTRtSASIVAVLRQgEVIVSPDPAFRFDAGDVVVVVGTRKGLDGVTAIL 159
                 699****************************8888***************************9998876 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   3.1e-05      0.28      31      56 ..     122     145 ..     106     160 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.1e-05
                 EEECEEEEEETTTEEEEEETTEEEEE CS
     Cupin_3  31 ileGevkvtpeggetvelraGDlvvl 56 
                 + +Gev v p    +++++aGD+vv+
  KIR64505.1 122 LRQGEVIVSP--DPAFRFDAGDVVVV 145
                 458*******..889*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1086.73
//
Query:       KIR64506.1  [L=355]
Description: hypothetical protein TK50_02215 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-06   26.2   4.9        0.6   10.3   0.1    3.6  3  BNR             BNR/Asp-box repeat
     0.0072   15.2   0.0       0.41    9.4   0.0    2.2  2  Sortilin-Vps10  Sortilin, neurotensin receptor 3,


Domain annotation for each model (and alignments):
>> BNR  BNR/Asp-box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1   0.00081       7.3       1      11 [.      90     100 ..      90     101 .. 0.84
   2 !    9.3   0.2   0.00015       1.3       1      11 [.     131     141 ..     131     142 .. 0.90
   3 !   10.3   0.1   6.7e-05       0.6       2      12 .]     212     222 ..     211     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00081
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 y + DgG++W 
  KIR64506.1  90 YATVDGGRSWR 100
                 5689******7 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00015
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 y+StDgG+t+ 
  KIR64506.1 131 YTSTDGGRTFA 141
                 89*******95 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 6.7e-05
                 EESSTTSS-EE CS
         BNR   2 yStDgGktWsk 12 
                 +StD+G tW++
  KIR64506.1 212 VSTDRGSTWQR 222
                 7********95 PP

>> Sortilin-Vps10  Sortilin, neurotensin receptor 3,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   4.6e-05      0.41       3      68 ..      89     151 ..      53     172 .. 0.81
   2 !    3.6   0.0    0.0026        23      49      65 ..     212     228 ..     197     238 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 4.6e-05
                     EEEESSTTSS-EE-GGGGTTEEBE-EEE-STTS--EEEEEES-EEEEESSTTSSEEEEE-SS-BS. CS
  Sortilin-Vps10   3 vyiSeDeGktwkkvkeklkgeaiqeivvhpfdkkkaylltdskklyvttDrGktwkkfklpfkpsl 68 
                     +y + D G++w ++++     + q+++v p      +ll +    y++tD G+t+  ++ +++p  
      KIR64506.1  89 LYATVDGGRSWRRLTHPRPVAENQQLYVAPG---VLMLLAEPHGRYTSTDGGRTFAHTTGEQEPVA 151
                     6888899999999987555555556666554...58888888888999999999988887777764 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0026
                     EESSTTSSEEEEE-SS- CS
  Sortilin-Vps10  49 vttDrGktwkkfklpfk 65 
                     v+tDrG+tw+++ +p +
      KIR64506.1 212 VSTDRGSTWQRTPVPVP 228
                     78999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      143  (0.0079759); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2662.75
//
Query:       KIR64507.1  [L=863]
Description: ATPase AAA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-54  185.2   0.1    2.4e-53  180.7   0.0    2.6  2  AAA_2            AAA domain (Cdc48 subfamily)
    5.3e-35  119.5   0.5    5.3e-35  119.5   0.5    2.5  2  AAA_lid_9        AAA lid domain
    8.3e-27   93.1   0.2    3.6e-26   91.0   0.2    2.2  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    3.3e-23   82.6   0.0    2.1e-11   44.4   0.0    2.8  2  AAA              ATPase family associated with various cellul
    1.2e-22   79.7   9.9    3.7e-12   46.2   0.9    4.2  3  Clp_N            Clp amino terminal domain, pathogenicity isl
    1.7e-18   67.0   0.1    3.3e-12   46.6   0.0    3.8  2  AAA_5            AAA domain (dynein-related subfamily)
    2.2e-09   37.9   2.7    1.7e-05   25.3   0.1    5.0  3  AAA_16           AAA ATPase domain
    2.3e-09   37.2   0.0    2.9e-06   27.1   0.0    2.5  2  Sigma54_activat  Sigma-54 interaction domain
      3e-08   34.0   0.1     0.0079   16.5   0.0    3.5  2  AAA_22           AAA domain
    8.8e-07   28.5   0.0    0.00042   19.8   0.0    3.3  2  TniB             Bacterial TniB protein
    9.8e-07   28.7   0.0      0.047   13.4   0.0    2.8  2  IstB_IS21        IstB-like ATP binding protein
    1.2e-05   24.8   0.0       0.25   10.7   0.0    3.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    1.2e-05   25.4   0.1          1    9.3   0.0    3.7  3  ATPase_2         ATPase domain predominantly from Archaea
      5e-05   23.9   0.6       0.57   10.6   0.0    3.4  3  AAA_23           AAA domain
    6.4e-05   23.0   0.0       0.38   10.8   0.0    2.6  2  AAA_14           AAA domain
    6.6e-05   22.5   0.0       0.12   11.9   0.0    2.3  2  AAA_7            P-loop containing dynein motor region
    9.5e-05   22.6   0.1      0.084   13.0   0.0    3.2  2  AAA_33           AAA domain
    0.00011   22.5   0.3        1.4    9.2   0.0    3.9  3  AAA_28           AAA domain
    0.00016   22.2   4.6       0.17   12.4   0.0    3.6  3  AAA_18           AAA domain
    0.00048   20.3   0.0        1.3    9.3   0.0    2.5  2  Roc              Ras of Complex, Roc, domain of DAPkinase
    0.00068   19.4   0.0       0.55    9.9   0.0    2.4  2  AAA_24           AAA domain
    0.00095   18.9   0.1        1.6    8.5   0.0    3.7  3  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00097   19.1   0.0       0.25   11.2   0.0    2.5  2  NACHT            NACHT domain
     0.0012   19.2   0.0          2    8.9   0.0    2.5  2  RNA_helicase     RNA helicase
     0.0014   18.7   0.0          2    8.4   0.0    2.6  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0016   18.3   0.0          5    7.0   0.0    3.3  3  AAA_3            ATPase family associated with various cellul
     0.0025   17.1   0.8        0.7    9.1   0.0    3.5  3  Zeta_toxin       Zeta toxin
     0.0027   17.6   0.0        2.8    7.8   0.0    2.7  2  RsgA_GTPase      RsgA GTPase
  ------ inclusion threshold ------
       0.01   16.3   0.0        2.1    8.8   0.0    2.8  2  ABC_tran         ABC transporter
      0.011   13.9   6.8      0.016   13.4   6.8    1.1  1  HOOK             HOOK protein
      0.012   15.4   0.0        5.1    6.9   0.0    2.5  2  AAA_29           P-loop containing region of AAA domain
      0.014   14.7   5.8      0.026   13.9   5.8    1.4  1  DUF4407          Domain of unknown function (DUF4407)
      0.014   14.4   0.0      0.049   12.7   0.0    1.9  1  T2SSE            Type II/IV secretion system protein
      0.021   15.0   1.9      0.048   13.8   1.9    1.6  1  Mod_r            Modifier of rudimentary (Mod(r)) protein
      0.028   13.6   0.0        3.7    6.6   0.0    2.7  2  DUF815           Protein of unknown function (DUF815)
      0.042   14.2   0.1        2.2    8.6   0.0    2.9  2  AAA_19           AAA domain
      0.043   13.6   0.0       0.26   11.1   0.0    2.1  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
      0.062   13.2   0.0        8.1    6.3   0.0    2.7  2  NTPase_1         NTPase
       0.15   12.1   0.0        3.8    7.5   0.0    2.4  2  ResIII           Type III restriction enzyme, res subunit
       0.15   11.9   0.0         13    5.5   0.0    2.6  2  Bac_DnaA         Bacterial dnaA  protein
       0.19   11.5   0.0        7.8    6.2   0.0    2.3  2  ATP_bind_1       Conserved hypothetical ATP binding protein
       0.22   11.3   6.9        6.7    6.5   0.0    3.0  2  DivIC            Septum formation initiator
       0.27   10.9   6.2        4.8    6.9   6.2    2.2  1  DUF4201          Domain of unknown function (DUF4201)
       0.32   11.1   1.6          5    7.1   0.0    3.0  3  DUF87            Helicase HerA, central domain
       0.48   10.3   2.6       0.92    9.4   2.6    1.4  1  FTA4             Kinetochore complex Fta4 of Sim4 subunit, or
        1.8    9.0   9.8        2.2    8.7   8.0    1.9  1  Fez1             Fez1
        4.2    6.9  10.1        1.7    8.2   4.9    2.3  2  DUF2968          Protein of unknown function (DUF2968)
        8.6    6.8   6.3         41    4.6   0.1    2.8  2  Csm1_N           Csm1 N-terminal domain


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.75   2.8e+02       6      45 ..     204     249 ..     199     323 .. 0.63
   2 !  180.7   0.0   6.5e-56   2.4e-53       1     171 []     601     763 ..     601     763 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.75
                 EEEE--TTSSHHHHHHHHHHHTT-..........-EEEEEGGG--- CS
       AAA_2   6 illlgptgvGktelakalaellfv......kkekkliradaselle 45 
                   l+g+ gvGkt + + la+ + +       ++kkl+ +d  ++  
  KIR64507.1 204 PVLIGEPGVGKTAIVEGLAQRIVAgdvpesLRDKKLVSLDLGAMVA 249
                 56889999*****999999887555555553444455555444444 PP

  == domain 2  score: 180.7 bits;  conditional E-value: 6.5e-56
                 -----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG-------- CS
       AAA_2   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessg 87 
                 rp++s+l+lgptgvGktelakalae+lf ++e++++r+d+se+ e    +h+v+rl+gappgyvg+eegG            ++llDE++K+hp     
  KIR64507.1 601 RPTGSFLFLGPTGVGKTELAKALAEFLF-DDERAMVRIDMSEYGE----KHSVARLVGAPPGYVGYEEGGqlteavrrrpysVILLDEVEKAHP----- 689
                 6899************************.****************....*********************************************..... PP

                 -----HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHHHTT--HHHHTT--EE CS
       AAA_2  88 advSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeeveeelkkglipEllgRlpei 171
                       +V+++LLq+l++g+ltd qgr+vd++n ++I+t+++gss isd     +  ee+ +e v   ++++++pE+l+Rl++i
  KIR64507.1 690 ------DVFDVLLQVLDDGRLTDGQGRTVDFRNAILILTSNLGSSVISDL----TLAEEQRREGVLAVVRSHFKPEFLNRLDDI 763
                 ......*******************************************4....45799999*******************976 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.5   1.4e-37   5.3e-35       1     102 [.     344     445 ..     344     447 .. 0.97
   2 ?    1.2   0.5      0.93   3.5e+02      64     100 ..     467     503 ..     453     507 .. 0.75

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 1.4e-37
   AAA_lid_9   1 seeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekelaklekekealekeeekekaer 99 
                 ++e+ti iLrglke+ye hHgv+i+d+al+aa+ lS+rYi+drflPdkAIDl+De a+r+r++ +s+p e++++e+ +++le e+ al ke + ++aer
  KIR64507.1 344 TIEDTIGILRGLKERYEVHHGVRITDAALVAAAALSDRYITDRFLPDKAIDLVDESASRLRMEIDSRPVEVDEIERAVRRLEIEEMALAKEPDAASAER 442
                 589*********************************************************************************************999 PP

   AAA_lid_9 100 lke 102
                 l++
  KIR64507.1 443 LDR 445
                 976 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.93
   AAA_lid_9  64 keskpeeleklekelaklekekealekeeekekaerl 100
                 ++s+ ++l+++++el++l  e e++e++ e e+a++l
  KIR64507.1 467 EKSHITKLSTAKEELERLGGEAERAERDGELERAAEL 503
                 3445577888999999999999999999888887776 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.2   9.6e-29   3.6e-26       4      81 .]     772     849 ..     769     849 .. 0.97

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 9.6e-29
                    HHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSSTTSEEEE CS
  ClpB_D2-small   4 eelkkIvdlalkklekrlkergvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegdtvrv 81 
                    ++l+ Ivd++l++++krl++r+++l+v+++a+ +lae+gydp yGARpLrr++q  i d+la+++lsg++++gdtv+v
     KIR64507.1 772 DDLRAIVDIQLDRMRKRLADRRLTLDVSEAARGWLAEHGYDPIYGARPLRRLVQSAIGDQLARALLSGAIRDGDTVQV 849
                    89*************************************************************************987 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   5.7e-14   2.1e-11       2     111 ..     205     318 ..     204     340 .. 0.76
   2 !   35.3   0.0   3.7e-11   1.4e-08       2     119 ..     607     733 ..     606     744 .. 0.84

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 5.7e-14
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 +l+G pG+GKT++++ +a+ +          + +++++++  ++   +y g+ e++++ +++e+k++++++i f+DE++ ++++    + e ++++ n 
  KIR64507.1 205 VLIGEPGVGKTAIVEGLAQRIvagdvpeslrDKKLVSLDLGAMVagAQYRGQFEERLKSVLEEIKNSNGQVITFLDELHTVVGAG---KGEGSMDAGNM 300
                 599*****************7666555555457899999999996566*****************99977***************...66666677777 PP

                 HHHHHHHTTTSSSTEEEEEEESS CS
         AAA  89 Llteldgvkkkeskvivigatnr 111
                 L ++l + +       ++gat+ 
  KIR64507.1 301 LKPMLARGEL-----RMVGATTL 318
                 7777766655.....56666665 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 3.7e-11
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS............STTHHHH.HHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvgesek.kirelfkeakekakp.silfiDEidalaksrsgseseeee 83 
                 l+ Gp G+GKT laka+a+ l   ++ +++i++se  +k            yvg  e  ++ e +++      p s++++DE+++ +++          
  KIR64507.1 607 LFLGPTGVGKTELAKALAEFLfddERAMVRIDMSEYGEKhsvarlvgappgYVGYEEGgQLTEAVRR---R--PySVILLDEVEKAHPDV--------- 691
                 899*****************9776699**********999******999998886655144444433...3..669**********9999......... PP

                 HHHHHHHHHHHHTTTS........SSTEEEEEEESSGGGSTHHH CS
         AAA  84 rvvnqLlteldgvkkk........eskvivigatnrpdkldpal 119
                    ++Ll++ld+ +           ++ i+i+++n  +++ + l
  KIR64507.1 692 --FDVLLQVLDDGRLTdgqgrtvdFRNAILILTSNLGSSVISDL 733
                 ..**********99999999999955589999999976666655 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.9     1e-14   3.7e-12       1      51 [.      17      67 ..      17      69 .. 0.96
   2 !   37.1   0.1   6.8e-12   2.5e-09       1      53 []      95     146 ..      95     146 .. 0.95
   3 ?   -1.3   0.0       6.8   2.5e+03      31      42 ..     160     171 ..     155     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 1e-14
                HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHH CS
       Clp_N  1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekl 51
                A +lA ++gh+ +++ HLLl+Ll+ ++++aa lL++aG+d+++lr+a +++
  KIR64507.1 17 AVALANQRGHATVEPWHLLLSLLDTEGSTAAGLLRAAGADPAELRRAAQRA 67
                778********************************************9986 PP

  == domain 2  score: 37.1 bits;  conditional E-value: 6.8e-12
                 HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHHC CS
       Clp_N   1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekllg 53 
                 A+++A+ lg++y stEHLL +L++ + G+ a +L++aG++++ l +a   ++g
  KIR64507.1  95 AEQIARPLGDEYTSTEHLLAGLARVG-GAVATALRNAGATEESLVAAFPTVRG 146
                 89**********************99.9****************999888876 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 6.8
                 HHHHHHTTSSHH CS
       Clp_N  31 arlLkkaGvdld 42 
                  ++L+k Gvdl 
  KIR64507.1 160 YQALAKYGVDLT 171
                 699*******86 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1    0.0001     0.038       3      27 ..     205     230 ..     203     335 .. 0.71
   2 !   46.6   0.0   8.8e-15   3.3e-12       2     122 ..     606     725 ..     605     740 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 0.0001
                 EEE--SSSSHHHHHHHGGGGB.S--E CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nrev 27 
                 +L+G+pG+gK+ ++e la+++    v
  KIR64507.1 205 VLIGEPGVGKTAIVEGLAQRIvAGDV 230
                 79*****************9974444 PP

  == domain 2  score: 46.6 bits;  conditional E-value: 8.8e-15
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--..........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreik.ngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrl 94 
                 +l +Gp+G+gK+ela+ la++l   +r ++ + ++++ ++  +   +    +     + + l++a+r    ++++lDEve+a+++v+++Ll++l++ rl
  KIR64507.1 606 FLFLGPTGVGKTELAKALAEFLfddERAMVRIDMSEYGEKHSVARLVGAPpGYVGYEEGGQLTEAVRrrPYSVILLDEVEKAHPDVFDVLLQVLDDGRL 704
                 789********************7777777777777777777776666554445555668999999998889*************************** PP

                 E..-SSSE.EE---......-EEEEEESS CS
       AAA_5  95 lleeggel.vkaknddllerfrviatanp 122
                    +g+++ v+++n        +i t+n 
  KIR64507.1 705 T--DGQGRtVDFRN------AILILTSNL 725
                 9..44444044444......667777665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   4.5e-08   1.7e-05       2      49 ..     182     226 ..     181     248 .. 0.89
   2 ?   -0.5   0.0       3.7   1.4e+03     110     145 ..     252     283 ..     229     300 .. 0.68
   3 !   21.5   0.6   6.4e-07   0.00024       1      88 [.     574     683 ..     574     835 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 4.5e-08
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellrale 49 
                 ++GR+ e++++ ++l+r  ++ p   +l+Ge+GvGK+++v+ l++++ 
  KIR64507.1 182 VIGRDSEIRRVIQVLSRRTKNNP---VLIGEPGVGKTAIVEGLAQRIV 226
                 78*********999998877766...899************9999876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 3.7
      AAA_16 110 elagaeasrllellkrllallsrderplvlvlDdlq 145
                 + +     ++ e lk+ l+ +++   +++ +lD+l+
  KIR64507.1 252 QYR----GQFEERLKSVLEEIKNSNGQVITFLDELH 283
                 333....445555666665555555559******99 PP

  == domain 3  score: 21.5 bits;  conditional E-value: 6.4e-07
      AAA_16   1 rlvGReeeleqLlsalervrsgrp......elvllsGesGvGKsslvrellralekdggiflrgkcdqlesa..........ipy.......salaqal 76 
                 r+vG  e ++++ +a++r+r+g        ++ l+ G+ GvGK+ l+++l++ l +d+   +r +  +++++                     +l++a 
  KIR64507.1 574 RVVGQAEAVSAVSDAVRRARAGVAdpdrptGSFLFLGPTGVGKTELAKALAEFLFDDERAMVRIDMSEYGEKhsvarlvgapP-GyvgyeegGQLTEAV 671
                 579999*************9998888999***********************9999976666666666633322223333320.023335434455555 PP

      AAA_16  77 areellrqllde 88 
                  r+ +   llde
  KIR64507.1 672 RRRPYSVILLDE 683
                 444444444444 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0079       2.9       2      61 ..     183     247 ..     182     288 .. 0.74
   2 !   27.1   0.0   7.7e-09   2.9e-06      23     124 ..     604     706 ..     575     737 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0079
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH.......HSTTTTS-EEEEETTTS CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraihe.......askrkekpfvavncaai 61 
                      ig++++++++++ +++ +k+  +v + Ge G+GK+ + + + +        ++ ++k++v+++ +a+
       KIR64507.1 183 IGRDSEIRRVIQVLSRRTKN-NPV-LIGEPGVGKTAIVEGLAQrivagdvPESLRDKKLVSLDLGAM 247
                      77888888888888776443.455.56********99888877555565533335555777766665 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 7.7e-09
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS-HHHHHHHH CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigelplelQekLl 114
                       s l +G +G+GK+ la+a+ e    +e+ +v+++++++ e+   ++L G   G + G e+  +   ++++   ++++LDe+++  +++   Ll
       KIR64507.1 604 GSFLFLGPTGVGKTELAKALAEFLFDDERAMVRIDMSEYGEKHSVARLVGAPPG-YVGYEEGGQltEAVRRRPYSVILLDEVEKAHPDVFDVLL 696
                      67899**********************************************998.88877755444566667789******************* PP

                      HHHHHSEEES CS
  Sigma54_activat 115 rvlqegever 124
                      +vl++g+++ 
       KIR64507.1 697 QVLDDGRLTD 706
                      *****98765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00023     0.084       4      68 ..     200     265 ..     197     320 .. 0.78
   2 !   16.5   0.0   2.1e-05    0.0079       6     117 ..     604     700 ..     600     712 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00023
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsstsskdllrellralglel 68 
                 t++  v++Ge+G+GKT  ++ l+++ ++   +e  +++++v+ +l +    ++ + ++ + l++ l
  KIR64507.1 200 TKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESlRDKKLVSLDLGAMVAGAQYRGQFEERLKSVL 265
                 778889**************9999987665555577777777777666666666666666555555 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2.1e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr 104
                 g+ +  G++G+GKT l++ l+e l  +      ++  v++++++ ++  +    ++r +g +  +      e   +l++a+r+r   +++++DE+++  
  KIR64507.1 604 GSFLFLGPTGVGKTELAKALAEFLFDD------ERAMVRIDMSEYGEKHS----VARLVGAPPGY---VGYEEGGQLTEAVRRRPY-SVILLDEVEKA- 687
                 677889*****************9533......55556888888886655....57788887777...666677888889999988.99999999998. PP

      AAA_22 105 seealeeLrslln 117
                 +++++  L + l+
  KIR64507.1 688 HPDVFDVLLQVLD 700
                 8777777766665 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.1e-06   0.00042      27     182 ..     193     338 ..     186     342 .. 0.86
   2 ?    1.9   0.0      0.34   1.3e+02      36      55 ..     604     623 ..     582     641 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.1e-06
        TniB  27 leypkrkrmpnlllvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekrlyaaiLealgaplkararvskleqqvlrllrelkvrvL.i 124
                 +++ +r   +n +l+G++ +GKt+ive  a+             ++++ ++p++  +k+l +  L a+ a ++ r + ++  + vl+ +++ + +v+  
  KIR64507.1 193 IQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQ-------------RIVAGDVPESLRDKKLVSLDLGAMVAGAQYRGQFEERLKSVLEEIKNSNGQVItF 278
                 5555555557788888888888888887665.............4788899*****************************************9999845 PP

        TniB 125 iDEihnll.agsarkqreflnalksLgnelkipivlvGt.eealralrtDpqlasRFepi 182
                 +DE+h ++ ag+ +    + n+lk +  + ++ +v++ t +e  +++++Dp l++RF+p+
  KIR64507.1 279 LDELHTVVgAGKGEGSMDAGNMLKPMLARGELRMVGATTlDEYREHIEKDPALERRFQPV 338
                 8****98758999999********************9993456679************97 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.34
        TniB  36 pnlllvGdsnnGKtmivekF 55 
                  + l++G++ +GKt +++  
  KIR64507.1 604 GSFLFLGPTGVGKTELAKAL 623
                 68999**********98865 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00035      0.13      45     104 ..     199     262 ..     184     268 .. 0.68
   2 !   13.4   0.0   0.00013     0.047      49      78 ..     605     634 ..     601     654 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00035
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavraglsvlf....vrvedLveelkrarrdgklaralk 104
                 ++k+n vl+G +GvGK+ +   l+++ v+ ++  +     +   dL + ++ a+  g+++++lk
  KIR64507.1 199 RTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLrdkkLVSLDLGAMVAGAQYRGQFEERLK 262
                 67899*******************9998865432220000223355666666666666666665 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00013
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsv 78 
                 ++++lGp+GvGK+ la al+     ++ ++
  KIR64507.1 605 SFLFLGPTGVGKTELAKALAEFLFDDERAM 634
                 5789***************98777666555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.012       4.4      12      63 ..     190     242 ..     179     263 .. 0.73
   2 !   10.7   0.0   0.00066      0.25      24      51 ..     605     632 ..     575     765 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.012
  Mg_chelatase  12 kralei.aaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasv 63 
                   +r++++ +   + n +l+G pG GKt + + l++ + + +  e+l  +k+ s+
    KIR64507.1 190 RRVIQVlSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKKLVSL 242
                   5555541344567789************9999887777777777766666665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00066
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllpplse 51 
                   ++l++Gp G GKt lak+l++ l + ++
    KIR64507.1 605 SFLFLGPTGVGKTELAKALAEFLFDDER 632
                   689****************999976443 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0027         1       4      42 ..     185     223 ..     183     229 .. 0.90
   2 ?    5.5   0.0     0.038        14     101     132 ..     256     287 ..     236     305 .. 0.85
   3 ?    5.4   0.0     0.039        15      26      53 ..     609     635 ..     600     654 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0027
    ATPase_2   4 RekelkeleeilerepneiyfiYGpegsGKtaLlkeiie 42 
                 R+ e++++ ++l+r +++  ++ G  g+GKta++  +++
  KIR64507.1 185 RDSEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQ 223
                 99****************99************9987665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.038
    ATPase_2 101 lvfkaielllekikkkgkkiiiiiDelqklid 132
                 + ++ ++++le+ik++  ++i ++Del  ++ 
  KIR64507.1 256 QFEERLKSVLEEIKNSNGQVITFLDELHTVVG 287
                 567899*********************99983 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.039
    ATPase_2  26 YGpegsGKtaLlkeiienledkdkyviy 53 
                  Gp g+GKt L k ++e l d  ++ + 
  KIR64507.1 609 LGPTGVGKTELAKALAEFLFDD-ERAMV 635
                 4*************99988553.34444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.32   1.2e+02      23      41 ..     205     223 ..     193     287 .. 0.80
   2 ?    4.6   2.1      0.11        41     153     194 ..     436     483 ..     372     523 .. 0.70
   3 !   10.6   0.0    0.0015      0.57      20      54 ..     604     638 ..     598     675 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.32
      AAA_23  23 lItGpNGaGKTTildAikl 41 
                 +++G+ G GKT+i++ +  
  KIR64507.1 205 VLIGEPGVGKTAIVEGLAQ 223
                 678999*********9975 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.11
      AAA_23 153 e.....rleelekeleeledekkllekl.eqekekekeleeleeelee 194
                 +     rl+ l+kel ++ ++   l ++ + ek+   +l++ +eele 
  KIR64507.1 436 DaasaeRLDRLRKELADKREQLTALSERwQTEKSHITKLSTAKEELER 483
                 234334777777777666666665555557777777777777777765 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.0015
      AAA_23  20 gltlItGpNGaGKTTildAiklaLygetprlsrks 54 
                 g +l+ Gp+G GKT +  A+   L+ + + + r +
  KIR64507.1 604 GSFLFLGPTGVGKTELAKALAEFLFDDERAMVRID 638
                 889*****************999999887777766 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0029       1.1       6      78 ..     205     287 ..     201     325 .. 0.72
   2 !   10.8   0.0     0.001      0.38       7      90 ..     608     702 ..     604     708 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0029
      AAA_14   6 vitGaRrvGKTtllkqlikell.......vkkesilyinldderd.kkla.dpekllelileklke.ekktylflDEiqevpe 78 
                 v+ G   vGKT +++ l+++          ++++ + ++l      ++++ ++e+ l+ +le++k+ +++ + flDE + v +
  KIR64507.1 205 VLIGEPGVGKTAIVEGLAQRIVagdvpesLRDKKLVSLDLGAMVAgAQYRgQFEERLKSVLEEIKNsNGQVITFLDELHTVVG 287
                 56777789*********9888899877666666666666666444522333566566667776555589999*******9944 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.001
      AAA_14   7 itGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe...............kllelileklkeekktylflDEiqev.pewekalkslvde 89 
                   G+  vGKT l+k l++ l+ +++ ++ i++ +  +k +   +               +l e++++    +  ++++lDE+ ++ p+++++l +++d+
  KIR64507.1 608 FLGPTGVGKTELAKALAEFLFDDERAMVRIDMSEYGEKHSVA-RlvgappgyvgyeeggQLTEAVRR----RPYSVILLDEVEKAhPDVFDVLLQVLDD 701
                 57999***********98877888888899988877644221.122333333333222233333333....33457******987699*****999998 PP

      AAA_14  90 g 90 
                 g
  KIR64507.1 702 G 702
                 8 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0047       1.7      32      56 ..     200     224 ..     186     234 .. 0.78
   2 !   11.9   0.0   0.00031      0.12      35      80 ..     605     650 ..     602     655 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0047
       AAA_7  32 nkkpvllvGptGtGKtviikdllkk 56 
                  k++ +l+G+ G+GKt+i++ l ++
  KIR64507.1 200 TKNNPVLIGEPGVGKTAIVEGLAQR 224
                 45667899***********987765 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00031
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqd 80 
                 ++l+ GptG+GKt ++k l + l +++  ++ i +s + + +++ +
  KIR64507.1 605 SFLFLGPTGVGKTELAKALAEFLFDDERAMVRIDMSEYGEKHSVAR 650
                 589********************99**********99987777665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.041        15       4      22 ..     206     224 ..     205     263 .. 0.93
   2 !   13.0   0.0   0.00022     0.084       3      96 ..     607     752 ..     606     803 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.041
      AAA_33   4 lvGlpGsGKstlaerllkk 22 
                 l+G pG+GK+  +e+l+++
  KIR64507.1 206 LIGEPGVGKTAIVEGLAQR 224
                 89**************975 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00022
      AAA_33   3 llvGlpGsGKstlaerllkklg.....avllssdt.............................................lrrrlfgtdqqskt..... 46 
                 l+ G+ G+GK+ la+ l++ l      +v+++  +                                             +                  
  KIR64507.1 607 LFLGPTGVGKTELAKALAEFLFdderaMVRIDMSEygekhsvarlvgappgyvgyeeggqlteavrrrpysvilldevekA------------Hpdvfd 693
                 799**************9888888888999998888888888888888888888887777777666666555544443332............033444 PP

      AAA_33  47 .........dytrvldrlyqilnelarkalsagrnvildatnlsrrerarflklarrlg 96 
                          ++t+   r+ ++ n+++  +   g +vi d t++++++r+ +l+++r + 
  KIR64507.1 694 vllqvlddgRLTDGQGRTVDFRNAILILTSNLGSSVISDLTLAEEQRREGVLAVVRSHF 752
                 44444444477778888888888889899999999************999999998543 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0037       1.4       3      33 ..     205     236 ..     203     280 .. 0.84
   2 ?   -0.7   0.4       3.9   1.4e+03      51     136 ..     413     456 ..     353     476 .. 0.50
   3 !    8.0   0.0    0.0084       3.1       3      21 ..     607     625 ..     605     648 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0037
      AAA_28   3 vitGgestGKTtlleaLaar.gypvvpEaare 33 
                 v++G ++ GKT ++e La+r     vpE+ r+
  KIR64507.1 205 VLIGEPGVGKTAIVEGLAQRiVAGDVPESLRD 236
                 89*****************9544477887775 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 3.9
      AAA_28  51 dllafaervleeqleeeaaaaankvlfcDrglldtlaYarayggeaeaeleaaarekrydl.vfllppapei..dddgeRredleerea 136
                 ++ ++++                                             a+r+ ++    +  +p++    + d  R+e  ++re+
  KIR64507.1 413 EVDEIER---------------------------------------------AVRRLEIEEmALAKEPDAASaeRLDRLRKELADKREQ 456
                 2222222.............................................3334444443333344442224445555555555555 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0084
      AAA_28   3 vitGgestGKTtlleaLaa 21 
                  ++G+ + GKT l++aLa+
  KIR64507.1 607 LFLGPTGVGKTELAKALAE 625
                 689**************96 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0057       2.1       3      66 ..     206     270 ..     205     292 .. 0.56
   2 !   12.4   0.0   0.00046      0.17       3      22 ..     608     627 ..     607     674 .. 0.81
   3 ?    0.2   0.1       2.8     1e+03      70     114 ..     739     793 ..     677     801 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0057
      AAA_18   3 ltGtpGvGKttlakeLskrlgf..............gvnlrdvakenglllevdpealdeskrldedkldklldalee 66 
                 l G pGvGKt + + L++r  +              +  l+ +++              +++   e++l+++l+++++
  KIR64507.1 206 LIGEPGVGKTAIVEGLAQRI-VagdvpeslrdkklvSLDLGAMVAG------------AQYRGQFEERLKSVLEEIKN 270
                 8899************9994.2334433222222222222222222............44444444444444444444 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00046
      AAA_18   3 ltGtpGvGKttlakeLskrl 22 
                   G+ GvGKt+lak+L++ l
  KIR64507.1 608 FLGPTGVGKTELAKALAEFL 627
                 57**************9865 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 2.8
      AAA_18  70 aleegknlvidghlaeleseaakdikk..........vvLtaspeelleRlekRg 114
                  ++eg   v+ +h    +  ++ di+            +++   + +++Rl++R+
  KIR64507.1 739 QRREGVLAVVRSHFKPEFLNRLDDIVVfaallgddlrAIVDIQLDRMRKRLADRR 793
                 4667777799999999999999999988999887777666666666666666664 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0068       2.5       3      22 ..     205     224 ..     204     234 .. 0.87
   2 !    9.3   0.0    0.0034       1.3       3      36 ..     607     639 ..     605     649 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0068
                 EEESSTTSSHHHHHHCHCT- CS
         Roc   3 vlvGdsgvGKtsllkrfved 22 
                 vl+G+ gvGKt +++ + ++
  KIR64507.1 205 VLIGEPGVGKTAIVEGLAQR 224
                 79***********9988765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0034
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvdf 36 
                 +++G +gvGKt l+k + e  f+++ ++++ +d+
  KIR64507.1 607 LFLGPTGVGKTELAKALAEFLFDDE-RAMVRIDM 639
                 789***************9999766.46666665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.011       4.1       3      34 ..     202     233 ..     200     286 .. 0.79
   2 !    9.9   0.0    0.0015      0.55       6      85 ..     607     695 ..     604     711 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.011
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfidtekG 34 
                 ++ +++G++g+GKT ++  l ++++  d+ ++
  KIR64507.1 202 NNPVLIGEPGVGKTAIVEGLAQRIVAGDVPES 233
                 56699**********99999777776666554 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0015
      AAA_24   6 liyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel...........aaeladyktlviDtideleelclaev 85 
                 l  Gp g+GKT lak l  ++lf d e+ + ++d  ++ + +s++ ++ +               a   ++y+++ +D ++++   +++ +
  KIR64507.1 607 LFLGPTGVGKTELAKAL-AEFLF-DDERAMVRIDMSEYGEKHSVARLVGAPPGYvgyeeggqlteAVRRRPYSVILLDEVEKAHPDVFDVL 695
                 678**************.66665.7788899999999887766666655544447778888888888888899999999998877776655 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.055        21      35      57 ..     203     225 ..     181     241 .. 0.79
   2 !    8.5   0.0    0.0042       1.6      10      55 ..     576     625 ..     570     636 .. 0.69
   3 ?   -0.2   0.0         2   7.5e+02      84     113 ..     675     704 ..     665     716 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.055
      RuvB_N  35 hvllyGpPGlGkttlakiiakel 57 
                   +l+G PG+Gkt++ + +a+ +
  KIR64507.1 203 NPVLIGEPGVGKTAIVEGLAQRI 225
                 34688*********988777654 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0042
      RuvB_N  10 igqekvkeklkifieaakkr....eealdhvllyGpPGlGkttlakiiak 55 
                 +gq++  + ++ +++ a++     +++    l+ Gp G+Gkt lak +a+
  KIR64507.1 576 VGQAEAVSAVSDAVRRARAGvadpDRPTGSFLFLGPTGVGKTELAKALAE 625
                 56666666666666555554111134445689**************9997 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 2
      RuvB_N  84 ekdvlfideihrlsraveevlysamedfrl 113
                 +  v+++de+ + ++ v +vl + ++d rl
  KIR64507.1 675 PYSVILLDEVEKAHPDVFDVLLQVLDDGRL 704
                 56899********************99876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00068      0.25       4      31 ..     205     232 ..     204     245 .. 0.90
   2 ?    5.1   0.0     0.052        19       5      22 ..     608     625 ..     605     636 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00068
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpq 31 
                 +l Ge+G+GKT+ +++la+ + +g+ p+
  KIR64507.1 205 VLIGEPGVGKTAIVEGLAQRIVAGDVPE 232
                 689****************999998876 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.052
                 EEC-TTTCHHHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqklal 22 
                   G+ G+GKT L++ la+
  KIR64507.1 608 FLGPTGVGKTELAKALAE 625
                 68************9986 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0     0.013       4.7       3      23 ..     206     226 ..     205     242 .. 0.87
   2 !    8.9   0.0    0.0052         2       2      23 ..     607     628 ..     606     648 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.013
  RNA_helicase   3 lyGpsgeGKStlakeLakall 23 
                   l G++g+GK+ +++ La+++ 
    KIR64507.1 206 LIGEPGVGKTAIVEGLAQRIV 226
                   78***************9986 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0052
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   ++ Gp+g+GK+ lak La+ l 
    KIR64507.1 607 LFLGPTGVGKTELAKALAEFLF 628
                   589*************997665 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0053         2       7      43 ..     189     225 ..     184     232 .. 0.79
   2 ?    7.2   0.0     0.012       4.6      22      43 ..     606     627 ..     573     635 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0053
                 HHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE   7 tealgkklakalgdvilLeGdLGaGKTtlvrglakal 43 
                 ++++ + l + +++  +L G+ G+GKT++v gla+ +
  KIR64507.1 189 IRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 225
                 56666666666677889*****************987 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.012
                 EEEEESTTSSHHHHHHHHHHHT CS
        TsaE  22 ilLeGdLGaGKTtlvrglakal 43 
                 +l+ G+ G+GKT l+++la+ l
  KIR64507.1 606 FLFLGPTGVGKTELAKALAEFL 627
                 7899**************9866 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.065        24       4      23 ..     206     225 ..     204     235 .. 0.88
   2 ?    2.0   0.0      0.46   1.7e+02       6      23 ..     610     627 ..     606     642 .. 0.78
   3 ?    7.0   0.0     0.013         5      64     108 ..     677     722 ..     662     740 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.065
       AAA_3   4 legvPGlaktllvkalakal 23 
                 l g PG++kt +v+ la+ +
  KIR64507.1 206 LIGEPGVGKTAIVEGLAQRI 225
                 6789*************986 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.46
       AAA_3   6 gvPGlaktllvkalakal 23 
                 g  G++kt l+kala+ l
  KIR64507.1 610 GPTGVGKTELAKALAEFL 627
                 678************987 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.013
       AAA_3  64 nllladeinrappktqsalleameerqvtv.egethklpepflvla 108
                 +++l de+++a p +   ll+++++ ++t  +g+t ++ +  l+l+
  KIR64507.1 677 SVILLDEVEKAHPDVFDVLLQVLDDGRLTDgQGRTVDFRNAILILT 722
                 689************************9962467777777777665 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.13        47      15      40 ..     200     225 ..     187     233 .. 0.77
   2 ?    0.2   0.4         1   3.9e+02     123     173 ..     425     484 ..     356     494 .. 0.71
   3 !    9.1   0.0    0.0019       0.7      14      58 ..     600     646 ..     586     656 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.13
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdel 40 
                 ++   +l G pG GK+++ e l++++
  KIR64507.1 200 TKNNPVLIGEPGVGKTAIVEGLAQRI 225
                 45555677***********9999876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1
  Zeta_toxin 123 evevvvvavkkelSrlgvldRyeee.vae.........gRlvpkeehdeafeglresveal 173
                 e+e +++a ++  +  + ldR ++e +            R+  +++h+   + ++e++e+l
  KIR64507.1 425 EIEEMALAKEPDAASAERLDRLRKElA-DkreqltalsERWQTEKSHITKLSTAKEELERL 484
                 344456666666777777777777742.234566666457777777777777777777766 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0019
  Zeta_toxin  14 erPklill.gGqpGAGKselaellkdele.rqgnvvrldpDdlRelh 58 
                 +rP+  +l  G +G GK+ela++l++ l   ++ +vr+d  ++ e h
  KIR64507.1 600 DRPTGSFLfLGPTGVGKTELAKALAEFLFdDERAMVRIDMSEYGEKH 646
                 6666443316999*************99989999*****99997777 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0076       2.8      96     122 ..     198     224 ..     172     239 .. 0.75
   2 ?    6.7   0.0     0.016         6     102     121 ..     606     625 ..     589     644 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0076
                  HCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  96 llkdktsvlvGqSGvGKStLinallpe 122
                  + +++  vl+G+ GvGK+++++ l+++
   KIR64507.1 198 RRTKNNPVLIGEPGVGKTAIVEGLAQR 224
                  33445679*************999876 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.016
                  EEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallp 121
                   +++G++GvGK+ L +al++
   KIR64507.1 606 FLFLGPTGVGKTELAKALAE 625
                  579***********999975 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0      0.14        53      15      35 ..     205     225 ..     196     307 .. 0.84
   2 ?    8.8   0.0    0.0057       2.1      16      37 ..     608     629 ..     602     656 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.14
                 EEEESTTSSHHHHHHHHTTSS CS
                 xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagll 35 
                 +++Ge G GK+ +++ la+  
  KIR64507.1 205 VLIGEPGVGKTAIVEGLAQRI 225
                 79***********99888765 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0057
                 EEESTTSSHHHHHHHHTTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  16 ivGenGaGKStLlkllagllkp 37 
                 ++G++G GK+ L+k+la+ l +
  KIR64507.1 608 FLGPTGVGKTELAKALAEFLFD 629
                 79**************987644 PP

>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   6.8   4.4e-05     0.016     452     566 ..     415     528 ..     389     538 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.4e-05
        HOOK 452 aevreklirLqhENKmLklkqegseeekltelqelledanrrkneLetenrlanqrileLeaqveelqkalqeqgskaedssllkkkleehleklkevq 550
                  e+   + rL+ E  +L  + ++ + e+l +l ++l d+++++  L +  ++++ +i++L++  eel++   e +  + d  +l+++ e +  ++  ++
  KIR64507.1 415 DEIERAVRRLEIEEMALAKEPDAASAERLDRLRKELADKREQLTALSERWQTEKSHITKLSTAKEELERLGGEAERAERD-GELERAAELRYGRIPALK 512
                 35566799**********999******************************************9***9988887777776.9***************** PP

        HOOK 551 eelqkkkeqleelepk 566
                 ++l+k +e l  l+++
  KIR64507.1 513 ADLAKAEEELARLQAD 528
                 ******9999988876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.032        12      21      42 ..     200     221 ..     191     229 .. 0.79
   2 ?    6.9   0.0     0.014       5.1      21      46 ..     602     627 ..     595     634 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.032
      AAA_29  21 lkgatlltGpsGsGKSTllDAi 42 
                 +k++ +l+G+ G+GK++++  +
  KIR64507.1 200 TKNNPVLIGEPGVGKTAIVEGL 221
                 455789************9766 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.014
      AAA_29  21 lkgatlltGpsGsGKSTllDAiqalL 46 
                 + g++l+ Gp+G+GK+ l  A++  L
  KIR64507.1 602 PTGSFLFLGPTGVGKTELAKALAEFL 627
                 45789**********99988877655 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   5.8   6.8e-05     0.026     107     208 ..     416     553 ..     414     599 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.8e-05
     DUF4407 107 eIdaelaeeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaake.................k 188
                 eI++ +++   ee + + ++ +aa+ ++l++l++++a+ +++++a+++r+++++ + +k  + +   + ++  G+ ++a++                  
  KIR64507.1 416 EIERAVRRLEIEEMALA-KEPDAASAERLDRLRKELADKREQLTALSERWQTEKSHITKLSTAKE--ELERLGGEAERAERdgeleraaelrygripaL 511
                 77777777766665444.56677899********************************9888744..44444455444444555555566888888888 PP

     DUF4407 189 kaqldaaqaelaelkakld......................a 208
                 ka+l++a++ela l+a+                        a
  KIR64507.1 512 KADLAKAEEELARLQADGAmlkeevgaddiaavvaswtgipA 553
                 888888888888888875565555555555555555555551 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00013     0.049     128     203 ..     602     678 ..     488     688 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
       T2SSE 128 erglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqleganqvqlnak..kakvtfadllraaLRlrPDri 203
                   g++l+ G+Tg GKt l+ al +++ ++++ +v + D  E+  ++  +  + a    ++ +    l +a+R+rP  +
  KIR64507.1 602 PTGSFLFLGPTGVGKTELAKALAEFLFDDERAMVRI-DMSEYGEKHSVARLVGAPpgYVGYEEGGQLTEAVRRRPYSV 678
                 47899*******************999995555555.99999888876666666534444444556888888888543 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.9   0.00013     0.048      27      88 ..     413     475 ..     394     497 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.00013
       Mod_r  27 evkqlkeekeellaeneslaeknlsl.epeleelrselqekleelkelekefeekeqeldell 88 
                 ev++++ +   l+ e+++la++  +   ++l+ lr+el++k+e+l++l+++++  ++   +l+
  KIR64507.1 413 EVDEIERAVRRLEIEEMALAKEPDAAsAERLDRLRKELADKREQLTALSERWQTEKSHITKLS 475
                 58999999999999999999988777699************************9999887776 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0098       3.7      45      80 ..     193     228 ..     173     285 .. 0.70
   2 ?    3.6   0.0     0.084        31      53      94 ..     603     644 ..     584     656 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0098
      DUF815  45 eqfleglpannvLLwGarGtGKSslvkallneyaee 80 
                  q l+ ++ nn +L+G+ G+GK ++v  l +++ + 
  KIR64507.1 193 IQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAG 228
                 466777888999***************999987654 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.084
      DUF815  53 annvLLwGarGtGKSslvkallneyaeegLrlievekedlke 94 
                 +   L+ G  G+GK  l kal + + +++ +++ ++ ++  e
  KIR64507.1 603 TGSFLFLGPTGVGKTELAKALAEFLFDDERAMVRIDMSEYGE 644
                 5678999****************9999999999998876655 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0059       2.2      10      36 ..     201     227 ..     193     252 .. 0.84
   2 ?    1.9   0.0      0.71   2.7e+02      10      36 ..     603     629 ..     594     640 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0059
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallve 36 
                 +++ ++++ pG GKT ++++  + +v+
  KIR64507.1 201 KNNPVLIGEPGVGKTAIVEGLAQRIVA 227
                 5667899***********998887765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.71
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallve 36 
                  + +l +++ G GKT++ k+  + l +
  KIR64507.1 603 TGSFLFLGPTGVGKTELAKALAEFLFD 629
                 56678899********99988877765 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00068      0.26      16      49 ..     600     633 ..     592     647 .. 0.87
   2 ?   -1.2   0.0         4   1.5e+03     101     128 ..     673     700 ..     665     703 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00068
  DNA_pol3_delta2  16 grlahayLfeGdegigkkelalnlakallceekn 49 
                      +r + ++Lf G++g+gk ela++la+ l+ +e+ 
       KIR64507.1 600 DRPTGSFLFLGPTGVGKTELAKALAEFLFDDERA 633
                      677789**********************998765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 4
  DNA_pol3_delta2 101 eskkkiiiiedaekmtksAaNalLktlE 128
                         + +i+++++ek ++     lL++l 
       KIR64507.1 673 RRPYSVILLDEVEKAHPDVFDVLLQVLD 700
                      566899*************999999986 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.022       8.1       4      25 ..     206     227 ..     203     233 .. 0.84
   2 ?    3.9   0.0      0.12        45       6      23 ..     610     627 ..     605     637 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.022
                 EE--TTSSHHHHHHHHHHHH.. CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellks 25 
                 + G+pGvGKt +v+ +++ +  
  KIR64507.1 206 LIGEPGVGKTAIVEGLAQRIVA 227
                 67************99998865 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.12
                 --TTSSHHHHHHHHHHHH CS
    NTPase_1   6 GppGvGKtTlvkkvlell 23 
                 Gp GvGKt l k ++e l
  KIR64507.1 610 GPTGVGKTELAKALAEFL 627
                 9***********999987 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.64   2.4e+02      12      47 ..     189     224 ..     184     229 .. 0.81
   2 ?    7.5   0.0      0.01       3.8       8      50 ..     578     629 ..     575     637 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.64
                 HHHHT......TTSEEEEEESTTSTHHHHHHHHHHH CS
      ResIII  12 ienlleklkskrdkrglikmaTGtGKTlvaaklier 47 
                 i+++++ l+ + +++ ++  + G+GKT +   l++r
  KIR64507.1 189 IRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQR 224
                 78888888877777888999*******998777665 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.01
                 HHHHHHHHT..............TTS.EEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII   8 Qeeaienlleklks........krdk.rglikmaTGtGKTlvaaklierllk 50 
                 Q+ea+ ++ +++          +r +  +l+  +TG+GKT +a +l+e l+ 
  KIR64507.1 578 QAEAVSAVSDAVRRaragvadpDRPTgSFLFLGPTGVGKTELAKALAEFLFD 629
                 788888888777767777776533335889************9999887776 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.17        62      32      59 ..     200     226 ..     183     240 .. 0.83
   2 ?    5.5   0.0     0.035        13      30      63 ..     599     632 ..     575     643 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.17
                 T.S--EEEE-SSSSSHHHHHHHHHHHHH CS
    Bac_DnaA  32 kkynPlfiygevGlGktHLlkaignevl 59 
                 +k nP++i ge G+Gkt +++ ++++++
  KIR64507.1 200 TKNNPVLI-GEPGVGKTAIVEGLAQRIV 226
                 36799988.9**********99998876 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.035
                 TTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHSS CS
    Bac_DnaA  30 pgkkynPlfiygevGlGktHLlkaignevlenap 63 
                 p++    +++ g++G+Gkt L ka++  + ++++
  KIR64507.1 599 PDRPTGSFLFLGPTGVGKTELAKALAEFLFDDER 632
                 66666778999**************988777665 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.24        90       2      20 ..     207     225 ..     206     249 .. 0.82
   2 ?    6.2   0.0     0.021       7.8       2      28 ..     609     635 ..     608     640 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.24
  ATP_bind_1   2 vGpaGsGKttfvgalseil 20 
                 +G +G+GKt +v+ l++ +
  KIR64507.1 207 IGEPGVGKTAIVEGLAQRI 225
                 8************999865 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.021
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgrsva 28 
                 +Gp G+GKt + +al+e+l + +r + 
  KIR64507.1 609 LGPTGVGKTELAKALAEFLFDDERAMV 635
                 7*****************998877664 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   2.4      0.03        11      18      59 ..     442     483 ..     437     485 .. 0.90
   2 ?    6.5   0.0     0.018       6.7      19      47 ..     508     536 ..     504     538 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXX CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyiee 59 
                 ++ +l++e+a++ ++l +l+++ +  ++ + +L+  ++ +e+
  KIR64507.1 442 RLDRLRKELADKREQLTALSERWQTEKSHITKLSTAKEELER 483
                 67899****************************989988886 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  19 ykqlkqeiaalqaelaklkaeneeLeaev 47 
                 + +lk+++a+ ++ela+l+a+ + L++ev
  KIR64507.1 508 IPALKADLAKAEEELARLQADGAMLKEEV 536
                 66899**********************98 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.2     0.013       4.8      54     138 ..     403     488 ..     396     538 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.013
     DUF4201  54 lnkkIeernkeLkrlkkkttk.tvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggll 138
                 l+ +I++r  e+ ++ + + + ++ +++  ke   + ++ l +l+kel +k e+l++l ++ +  k + +kl + +e+l++ gg+ 
  KIR64507.1 403 LRMEIDSRPVEVDEIERAVRRlEIEEMALAKEPDAASAERLDRLRKELADKREQLTALSERWQTEKSHITKLSTAKEELERLGGEA 488
                 66677888888888877777646888899999999999999************************************999999875 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       2.9   1.1e+03      29      49 ..     207     227 ..     205     242 .. 0.84
   2 ?    0.3   0.5       1.6   6.1e+02      95     144 ..     422     478 ..     391     527 .. 0.54
   3 ?    7.1   0.0     0.014         5      26      60 ..     606     639 ..     603     661 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2.9
       DUF87  29 lgsTGsGKSntvavLleelle 49 
                 +g+ G+GK+  v  L +++++
  KIR64507.1 207 IGEPGVGKTAIVEGLAQRIVA 227
                 6888**************996 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.6
       DUF87  95 wsldpeelldlleeddkpaaavqrsvleealdqaka........keekeklssdepve 144
                 ++l++ee++   e  d ++a++++++ +e+ d+ ++        ++ek +++  +  +
  KIR64507.1 422 RRLEIEEMALAKEP-DAASAERLDRLRKELADKREQltalserwQTEKSHITKLSTAK 478
                 44444444444444.2222222222222222222222225433333333333333333 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.014
       DUF87  26 lAilgsTGsGKSntvavLleellekkgatililDp 60 
                 ++ lg TG+GK+ +++ L e l  ++   ++ +D+
  KIR64507.1 606 FLFLGPTGVGKTELAKALAEFLF-DDERAMVRIDM 639
                 6679****************999.66666666666 PP

>> FTA4  Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.6    0.0025      0.92      96     170 ..     419     488 ..     366     527 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0025
        FTA4  96 dltkeelIkeLPesweveekeaeeepleallerYaelrarLielserrqqlqarlarlrklkallepflgsedpq 170
                 + +++  I+e+  ++e   + a++e l+ l+++ a+ r++L++lser q+ ++ + +l++ k++le++ g    +
  KIR64507.1 419 RAVRRLEIEEMALAKEP--DAASAERLDRLRKELADKREQLTALSERWQTEKSHITKLSTAKEELERLGGE---A 488
                 44446667777777773..344555579999999999****************************999543...2 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   8.0    0.0059       2.2      48     150 ..     394     494 ..     390     507 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0059
        Fez1  48 eekeeeikeleesleektlelevcenelqrkkseaell.rekvekleeelkelreelselsleeeeaalesdeakaqrqeaeeleelkreverlraeLk 145
                 +  +e++++l+ +++++  e++++e  ++r + e+  l +e   +  e l +lr+el+++ ++ +   + s++ ++++++ ++l++ k+e+erl +e +
  KIR64507.1 394 DLVDESASRLRMEIDSRPVEVDEIERAVRRLEIEEMALaKEPDAASAERLDRLRKELADKREQLT---ALSERWQTEKSHITKLSTAKEELERLGGEAE 489
                 566889999*********************987765551666777778899******99554444...4455555677777889999999999988866 PP

        Fez1 146 eerqk 150
                   ++ 
  KIR64507.1 490 RAERD 494
                 55444 PP

>> DUF2968  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.9    0.0047       1.7      99     161 ..     421     482 ..     397     490 .. 0.82
   2 ?    0.7   0.2      0.93   3.5e+02      82     112 ..     503     533 ..     493     542 .. 0.51

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0047
     DUF2968  99 irrikleaqkaqlerqiaasearaerLqadlavarqQeqavaerQkqarkeaaaLeaqreaaq 161
                 +rr+++e + a +++  aas++r+ rL+++la +r+Q +a++er ++ ++  ++L++ +e+++
  KIR64507.1 421 VRRLEIE-EMALAKEPDAASAERLDRLRKELADKREQLTALSERWQTEKSHITKLSTAKEELE 482
                 4555444.4455666678999************************************999875 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.93
     DUF2968  82 aiYadfarqtaelaeveirrikleaqkaqle 112
                   Y ++    a+la+ e   ++l+a+ a+l+
  KIR64507.1 503 LRYGRIPALKADLAKAEEELARLQADGAMLK 533
                 4444444444444444444444444444444 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   2.2      0.35   1.3e+02      16      66 ..     415     466 ..     409     470 .. 0.82
   2 ?    4.6   0.1      0.11        41      32      70 .]     497     535 ..     495     535 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.35
      Csm1_N  16 dsAdllvsklvhENsvLsqklet.kdqeiesLkeqlaeleekvkeleerrkk 66 
                 d+ + +v +l  E   L+++ +    +++ +L+++la  +e++  l er ++
  KIR64507.1 415 DEIERAVRRLEIEEMALAKEPDAaSAERLDRLRKELADKREQLTALSERWQT 466
                 67788999998888888888876156789*************9999988665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.11
      Csm1_N  32 LsqkletkdqeiesLkeqlaeleekvkeleerrkkqeEe 70 
                 L+++ e +  +i +Lk+ la++ee++++l+ + +  +Ee
  KIR64507.1 497 LERAAELRYGRIPALKADLAKAEEELARLQADGAMLKEE 535
                 66778899999*****************99988877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       852  (0.0475208); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                       132  (0.00736237); expected 17.9 (0.001)
Passed Fwd filter:                        54  (0.00301188); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              48  [number of targets reported over threshold]
# CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.46
# Mc/sec: 5592.50
//
Query:       KIR64508.1  [L=123]
Description: hypothetical protein TK50_02225 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.037   14.0   0.2      0.082   12.9   0.0    1.6  2  DUF2019   Domain of unknown function (DUF2019)


Domain annotation for each model (and alignments):
>> DUF2019  Domain of unknown function (DUF2019)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.24   4.4e+03      63      72 ..       4      13 ..       2      20 .. 0.59
   2 ?   12.9   0.0   4.5e-06     0.082      35      89 ..      38      92 ..      34     102 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.24
                HHHHHHTTTT CS
     DUF2019 63 RlkAAkatLA 72
                Rl+AA   LA
  KIR64508.1  4 RLDAAVRELA 13
                6666666665 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.5e-06
                HHHHHHHHSTT-GGGGGGGGGGSS-HHHHHHHHHTTTTT-HHHHHHHHHHHHHHT CS
     DUF2019 35 evsaELkrrdGDqRraLlsLyehpnvqvRlkAAkatLAvapaeArkqleaiassk 89
                ev   L + +   Rr +  L++h     R+ AA+ +  v pa+Ar++ ea++ s+
  KIR64508.1 38 EVERQLDAHPERARRKVDWLLAHGSPAGRAYAATLLGRVDPAAARAAWEALRGSE 92
                6788899999999************************************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 930.30
//
Query:       KIR64509.1  [L=210]
Description: hypothetical protein TK50_02230 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-30  104.8   0.1    4.9e-30  104.5   0.1    1.1  1  DUF4178   Domain of unknown function (DUF4178)


Domain annotation for each model (and alignments):
>> DUF4178  Domain of unknown function (DUF4178)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.1   2.7e-34   4.9e-30       2     140 ..      62     193 ..      61     195 .. 0.96

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 2.7e-34
     DUF4178   2 lGdivtldgedyvVvGrlrydeggyrwtEylledgseg.rwLsvee...lelalletvpgrelepgewpeapedppetltldgkrYrleergtarvtav 96 
                 +Gdiv+++g+ y V+G + ++eg ++w+E+ll+d+++g  wLsvee   + ++l++t p  +++pg +p        +++ldg rY  +e g+ar   +
  KIR64509.1  62 PGDIVEIRGTSYGVRGSVLLREGSWTWSEHLLDDAAGGqLWLSVEEdpdVIMVLWTTDPALTITPG-AP--------SIDLDGHRYVSKEAGHAR---F 148
                 8*****************************************************************.56........9*****************...* PP

     DUF4178  97 egegptgvrageevrywdyesddgrlLsiErwgge.pevslGryv 140
                 ++ g tg+++++ +ry+dy+++ +  Ls+E++g+  +ev +G ++
  KIR64509.1 149 TATGSTGLDPSGAMRYHDYRGPGKLRLSFEAYGNAaWEVARGDEL 193
                 **********************9999*******888******876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1684.30
//
Query:       KIR64510.1  [L=187]
Description: hypothetical protein TK50_02235 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-49  166.8   0.0    4.4e-49  166.6   0.0    1.0  1  DUF2617   Protein of unknown function DUF2617


Domain annotation for each model (and alignments):
>> DUF2617  Protein of unknown function DUF2617
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.6   0.0   2.5e-53   4.4e-49       2     160 ..       3     164 ..       2     165 .. 0.96

  Alignments for each domain:
  == domain 1  score: 166.6 bits;  conditional E-value: 2.5e-53
     DUF2617   2 aeldvayaDvsaadLglslkapeleaLaelelevggl.tvelrvlGaSHqVtveaeegelsEtvaClagaaspLPasaeeedeeYefasrvealdeeef 99 
                 ++ld++y+D+saadL+l+l+  e +aL++l+l+++g+ +++lr+lGaSHqV+++a++ el+EtvaCl+g++ +LPa+   e  +Y+f+++v   + +e+
  KIR64510.1   3 VTLDAPYVDTSAADLSLALGDGERPALHVLDLDLPGGiRLRLRLLGASHQVVLRAAGTELTETVACLPGRPPELPATRLDEANGYRFTATVLRPAGAEL 101
                 689*******************************7766***************************************999988**************** PP

     DUF2617 100 aaraeelraraadeeeallgvFPgdpaalTalvaev..dggglswrTwHlYPqegeiVaTrsr 160
                 ++r+++lra++a ++ al+gvFPgd +a+Tal++++   +g++ wrTwH+YPq++e+V T+++
  KIR64510.1 102 STRVAALRAELAGDPYALVGVFPGDADAVTALAVRTdpPDGAVGWRTWHAYPQTNELVLTETV 164
                 **********************************99667899*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       195  (0.0108762); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1376.54
//
Query:       KIR64511.1  [L=141]
Description: hypothetical protein TK50_02240 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-18   65.8   0.0    6.8e-18   65.5   0.0    1.0  1  DUF4247   Domain of unknown function (DUF4247)
  ------ inclusion threshold ------
       0.89    9.5   2.6        4.2    7.3   0.9    2.1  2  SLATT_1   SMODS and SLOG-associating 2TM effector domain 1


Domain annotation for each model (and alignments):
>> DUF4247  Domain of unknown function (DUF4247)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   7.6e-22   6.8e-18       7     121 ..      22     140 ..      16     141 .] 0.87

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 7.6e-22
     DUF4247   7 gcg....sasvrdyiaknYqlessadegktdstvYraanksvpeVakeiaaqeePedkspeddetmyLvYeddivtvqkddtkgsdvlveidskggYrg 101
                 +++    + s+r y++++Y++++s d g  +  +Y++++ ++++Vake++++++P+d+   d + +yL+Y+dd v++ + ++ gs +l e    + Y +
  KIR64511.1  22 AFAifygNFSPRGYVQDRYNRAASRDIGG-QAVAYTSTK-TPSQVAKEVTDAWQPADQY-VDGSGVYLRYDDDSVVILPIAA-GSVILLE-RLTTAYPR 115
                 4444445889*********9999999775.899*****9.*******************.**********************.*******.999***** PP

     DUF4247 102 Ys.....Gsiirrgkgftssgpsvg 121
                 Y+     ++ + rg +++++gp++g
  KIR64511.1 116 YHstvgsHWGWGRGSTVRGGGPGAG 140
                 9889977777888888888888765 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.9   0.00047       4.2      24      48 ..       3      28 ..       1      37 [. 0.85
   2 ?    1.7   0.0     0.025   2.3e+02      80     111 ..      39      71 ..      34      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00047
     SLATT_1 24 akrwrlllillellalllaalr.afg 48
                ++rw+++ +++ ++++llaa+   +g
  KIR64511.1  3 YRRWFVVGAAVAVVGALLAAFAiFYG 28
                79******************994444 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.025
     SLATT_1  80 aYslaa.eeLeiiraaleaeateeewaklVada 111
                 +Y++aa ++++ +  a ++++t++++ak V da
  KIR64511.1  39 RYNRAAsRDIGGQAVAYTSTKTPSQVAKEVTDA 71 
                 68776626899999999999********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1045.23
//
Query:       KIR64512.1  [L=140]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-32  111.5  13.4    1.7e-16   60.1   4.4    2.2  2  DUF350    Domain of Unknown Function (DUF350)
  ------ inclusion threshold ------
        1.4    9.3   9.0       0.11   12.7   0.8    2.7  2  DUF4064   Protein of unknown function (DUF4064)


Domain annotation for each model (and alignments):
>> DUF350  Domain of Unknown Function (DUF350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   1.6   1.9e-19   1.7e-15       1      54 []      14      68 ..      14      68 .. 0.99
   2 !   60.1   4.4   1.9e-20   1.7e-16       1      54 []      85     139 ..      85     139 .. 0.99

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 1.9e-19
      DUF350  1 YgvvGivllllgffvfdllTpgklgelIkqgnn.AaaivlagviiglaiivaaAi 54
                YgvvG+vl+ +g+ ++d  Tpgkl+elI+ ++n +aa++l + ++g++ iv aAi
  KIR64512.1 14 YGVVGVVLMGIGYGLVDVATPGKLHELIWTERNrNAALLLSSNLLGVGTIVVAAI 68
                9******************************999********************9 PP

  == domain 2  score: 60.1 bits;  conditional E-value: 1.9e-20
      DUF350   1 YgvvGivllllgffvfdllTpgklgelIkqgnn.AaaivlagviiglaiivaaAi 54 
                 Yg+vG+v+++++f+++d +Tpg+lgel ++ ++ +a +v+a+v++++++i+aaAi
  KIR64512.1  85 YGIVGLVIMAAAFLLLDAVTPGRLGELLVDPEPhPAVWVSAVVHLATGAIIAAAI 139
                 9*****************************************************9 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2     0.058   5.2e+02      68      82 ..       8      22 ..       2      33 .. 0.73
   2 ?   12.7   0.8   1.3e-05      0.11       6      43 ..      75     116 ..      72     140 .] 0.67

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.058
     DUF4064 68 aliaivlgivgalll 82
                +l++++ g+vg++l+
  KIR64512.1  8 LLVTLAYGVVGVVLM 22
                567777777777766 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.3e-05
     DUF4064   6 iiLglIGgilgillglllllflfllssgefsqeltee....q 43 
                 ++Lgl+G++ + + gl+++ ++fll +  +   l+e     +
  KIR64512.1  75 FVLGLVGAAAYGIVGLVIMAAAFLLLDAVTPGRLGELlvdpE 116
                 8***********************998888777766544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1064.78
//
Query:       KIR64513.1  [L=258]
Description: hypothetical protein TK50_02250 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.049   13.9   0.8       0.43   10.8   0.3    2.1  2  TctB      Tripartite tricarboxylate transporter TctB family
       0.24   11.5   1.3       0.96    9.6   0.1    2.3  2  CbtB      Probable cobalt transporter subunit (CbtB)
          5    7.4   7.0       0.79   10.0   0.3    2.6  3  DUF4381   Domain of unknown function (DUF4381)


Domain annotation for each model (and alignments):
>> TctB  Tripartite tricarboxylate transporter TctB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.063   3.8e+02      66      79 ..      23      36 ..       7      96 .. 0.66
   2 ?   10.8   0.3   7.2e-05      0.43      48      90 ..     181     242 ..     150     245 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.063
        TctB 66 llklvlallaalll 79
                + ++v+al+ ++l+
  KIR64513.1 23 ASGWVIALVTVVLV 36
                33355553333333 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 7.2e-05
        TctB  48 v....................aadgekeekearedwrkllklvlallaalllyallleplGfi 90 
                 +                     a +++ +++ +++wr  ++++la+  +ll+ all+++ Gf+
  KIR64513.1 181 LplllaetgvvppaaapsaqpGATAAPLPDAGSDFWRDRWGWLLATGGLLLVTALLFTV-GFV 242
                 22333566666677777888766677778888999**********88888887777766.997 PP

>> CbtB  Probable cobalt transporter subunit (CbtB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.19   1.1e+03       7      23 ..      24      40 ..      18      46 .. 0.57
   2 ?    9.6   0.1   0.00016      0.96      11      32 ..     223     244 ..     218     246 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.19
        CbtB  7 aqrllqlvaAllLGlll 23
                +  +++lv+++l G ++
  KIR64513.1 24 SGWVIALVTVVLVGGCI 40
                44455666666666555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00016
        CbtB  11 lqlvaAllLGlllvylvgfsqa 32 
                 l ++++llL ++l+++vgf+q 
  KIR64513.1 223 LLATGGLLLVTALLFTVGFVQR 244
                 56899***************96 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2       0.2   1.2e+03      18      32 ..      23      37 ..      17      46 .. 0.65
   2 ?   -1.0   0.1      0.32   1.9e+03      18      33 ..     169     185 ..     164     190 .. 0.71
   3 ?   10.0   0.3   0.00013      0.79      12      50 ..     213     250 ..     206     254 .. 0.53

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.2
     DUF4381 18 apGwwlllaalllll 32
                a Gw + l+ ++l++
  KIR64513.1 23 ASGWVIALVTVVLVG 37
                678777776666632 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.32
     DUF4381  18 apGwwlllaalll.lll 33 
                  pGw ++ aa++l lll
  KIR64513.1 169 DPGWAVCRAAVALpLLL 185
                 59*99999777764333 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00013
     DUF4381  12 vswwPpapGwwlllaalll..llllvlalwllrrrkrnrre 50 
                  ++w   +Gw l   +lll  +ll+ ++++++   + +r +
  KIR64513.1 213 SDFWRDRWGWLLATGGLLLvtALLFTVGFVQR--SR-QRAT 250
                 379999***77766666665333333333332..22.2444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.54
# Mc/sec: 1430.47
//
Query:       KIR64514.1  [L=531]
Description: spermidine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-31  107.6   0.0    8.2e-31  106.9   0.0    1.3  1  Spermine_synth   Spermine/spermidine synthase domain
    3.2e-06   27.8   0.1    2.8e-05   24.7   0.0    2.2  2  Methyltransf_25  Methyltransferase domain
    0.00019   22.0   0.2     0.0021   18.7   0.0    2.3  2  Methyltransf_11  Methyltransferase domain
    0.00083   18.9   0.0     0.0019   17.8   0.0    1.5  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.012   16.3   0.0      0.027   15.2   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
        0.1   12.4   0.0       0.22   11.3   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
       0.23   11.4   0.0       0.38   10.7   0.0    1.2  1  DUF4751          Domain of unknown function (DUF4751)


Domain annotation for each model (and alignments):
>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.0   3.2e-34   8.2e-31       2     174 ..     295     467 ..     294     474 .. 0.93

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 3.2e-34
                     HHHHHHHHHHHHCCSSST-EEEEESSTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHH..HSHHHHTTCGGCTTEEEEESTCHHHHCTCSS-EE CS
  Spermine_synth   2 faykemiahvplmlhknpkevLiiGGgDGgvlrevvkhntvekitlvdiDqkvidfskk..flpslaisafndarvklvlgdgfkflkayekkfd 94 
                       y+e+++h +l+      evL++G gDG ++re+++++ v ++t+vd+D  v+ + ++   l++l+++af d+rv +v+ d+f+ l++  + fd
      KIR64514.1 295 YRYHEALVHPALNGPR--GEVLVLGAGDGLAVREILRYPDVRRVTVVDLDPAVVALARSepQLRELNGDAFADPRVRVVNVDAFGWLREATERFD 387
                     579******8887665..79************************************998557********************************* PP

                     EEEEECCSTTCSSCG.CSSHHHHHHHHHTEEEEEEEEEEEEETTTCHHHHHHHHHHHHTTSSCEEEEEEEETTTSCSCEEE CS
  Spermine_synth  95 vvivdsldpvgpaen.lFskeffdllkkvlkedGviilqaekpelekelvinvdksgkqvfalqvepsavlvPtylsgmin 174
                     vv++d+ dp  +a + l++ ef+ l+  vl ++G +++q+ +p +   +  ++++s++++ +  + p+ v vP++  ++ +
      KIR64514.1 388 VVVADLPDPDETATAkLYTVEFYALVRAVLADGGRLVVQSGSPYFAPRSYWSIEASVREAGF-ATVPYHVDVPSFGDWGFV 467
                     ********88777777**********************************************.89999999**99887655 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.45   1.2e+03       4      33 ..     216     243 ..     214     262 .. 0.83
   2 !   24.7   0.0   1.1e-08   2.8e-05       1      71 [.     313     392 ..     313     421 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.45
                      ET-TTSHHHHHHHCTSTSSEEEEEESSHHH CS
  Methyltransf_25   4 lGcGtGrltlalakrlgkakvtgvDiseem 33 
                      ++ GtG ++ al      a vt+ D+  ++
       KIR64514.1 216 VAVGTGSVVVALCLG--YAWVTAADFEVTA 243
                      789******999955..5999999997665 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 1.1e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT........TEEEEESBCCG.BSSSTTTEEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl........nvefvqgdaed.lpfedgsfDlvvss 71 
                      vL lG+G G  ++++++     +vt vD++++ ++ ar++ + ++l        +v++v+ da   l ++ ++fD+vv+ 
       KIR64514.1 313 VLVLGAGDGLAVREILRYPDVRRVTVVDLDPAVVALARSEPQLRELngdafadpRVRVVNVDAFGwLREATERFDVVVAD 392
                      899*************99558*****************7776644444455666******99977478999*******93 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.3   7.7e+02       3      33 ..     216     246 ..     214     270 .. 0.79
   2 !   18.7   0.0   8.2e-07    0.0021       1      69 [.     314     393 ..     314     425 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.3
                      ET-TTSHHHHHHHHTTSEEEEEES-HHHHHH CS
  Methyltransf_11   3 vGcGtGrlaealakrgarvvgvDlskemlkl 33 
                      v++GtG+++ al   +a v++ D+  +++++
       KIR64514.1 216 VAVGTGSVVVALCLGYAWVTAADFEVTARQQ 246
                      789999999999977799***9998887744 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 8.2e-07
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-........EEEETTEECCC.TSS-TT-EEEEEEES CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl........kvefvvadaek.lpfednsfDlvvsse 69 
                      L +G+G G+ ++++ ++   +rv+ vDl++++++la+++ + ++l        +v++v  da   l  + + fD+vv+  
       KIR64514.1 314 LVLGAGDGLAVREILRYPdvRRVTVVDLDPAVVALARSEPQLRELngdafadpRVRVVNVDAFGwLREATERFDVVVADL 393
                      569************88799****************99999999999999999888899998875788999*****9876 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   7.3e-07    0.0019      31     137 ..     309     425 ..     298     440 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.3e-07
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC........EEEEE-STTTTST..TS-EEEEEE---STTTCHCHHHHHH CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle........vevvasdvleeve..ekkfdlivsNPPfhagkatelavae 119
                  +g+vl lG+G G+   ++++  +  +vt+vd d + +++a+   +  +l+        v+vv+ d++  +    ++fd++v   P  +++at +  + 
  KIR64514.1 309 PRGEVLVLGAGDGLAVREILRYPDVRRVTVVDLDPAVVALARSEPQLRELNgdafadprVRVVNVDAFGWLReaTERFDVVVADLPDPDETATAKLYTV 407
                 6789*********87777777555555*********99999998888887777898999888888876554422389********************** PP

                 HHHHHHHHHEEEEEEEEE CS
         MTS 120 eliaeAkeaLkegGeLli 137
                 e+ a  +++L++gG+L++
  KIR64514.1 408 EFYALVRAVLADGGRLVV 425
                 ***************976 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   1.1e-05     0.027       1      72 [.     314     391 ..     314     423 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-05
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsai..edakeklakrennnnnnvelealdlldldgg.......ssfDlvva 72 
                      L +G+G+G  +r++l++    ++t+vD++p+++  ++ + +l++ +++ ++  ++++ +++            + fD+vva
       KIR64514.1 314 LVLGAGDGLAVREILRYPDVRRVTVVDLDPAVValARSEPQLRELNGDAFADPRVRVVNVD---AFgwlreatERFDVVVA 391
                      569**************7777888*******994455555666666666666666666643...333689999******96 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.7e-05      0.22      14      87 ..     303     390 ..     292     399 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.7e-05
  Methyltransf_23  14 erllpklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae................kakkaqkdqfdeqeaaepqg........ 81 
                      + +l  + ++g+vL +G+G+G   +++ +++    vt+vDl+p+ v++a+                                            
       KIR64514.1 303 HPAL--NGPRGEVLVLGAGDGLAVREILRYPDvrRVTVVDLDPAVVALARsepqlrelngdafadpR------------------Vrvvnvdaf 376
                      3344..8899***********7777775543336**************9855544444433333221..................012222222 PP

  Methyltransf_23  82 ........kfdlIv 87 
                              +fd++v
       KIR64514.1 377 gwlreateRFDVVV 390
                      22222233777766 PP

>> DUF4751  Domain of unknown function (DUF4751)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00015      0.38      57      98 ..     268     309 ..     238     325 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
     DUF4751  57 tdrknghrdtvinyllngqkwqstiedyiffhalegkelrgy 98 
                 + r  gh dt +  +lng+   s+i++y +  al   +l+g 
  KIR64514.1 268 SVREVGHADTDLRLFLNGDLQFSSIDEYRYHEALVHPALNGP 309
                 45889****************************998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.55
# Mc/sec: 2882.02
//
Query:       KIR64515.1  [L=327]
Description: hypothetical protein TK50_02260 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2393.23
//
Query:       KIR64516.1  [L=305]
Description: hypothetical protein TK50_02265 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.36   10.7   4.6        3.1    7.7   3.0    2.7  2  DUF2976       Protein of unknown function (DUF2976)
       0.51   10.7  10.1        4.8    7.5   0.1    2.2  2  DUF4064       Protein of unknown function (DUF4064)
        1.6    8.5  11.7        2.5    7.9  11.5    1.4  1  Trp_oprn_chp  Tryptophan-associated transmembrane protein (Tr


Domain annotation for each model (and alignments):
>> DUF2976  Protein of unknown function (DUF2976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.0   0.00052       3.1      17      82 ..      15      83 ..       4      90 .. 0.77
   2 ?    1.3   0.0     0.052   3.1e+02      27      48 ..     155     172 ..     131     192 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00052
     DUF2976 17 lelikgylkdgvillgLvlaavaflaVakaalkkfnei....segkaewgkfgltlvvGvvllvvviwLl 82
                + +i+ yl   ++ll L+   v  +aVa ++ + f+++     +g + +g f +  ++G  +l++v+ L+
  KIR64516.1 15 IVTISSYLLMFFALLQLL-NLVTTIAVAGKLRQGFEDAfagtASGAEGLGTFVVGFAIGSAVLMLVLALV 83
                668999999999999885.5566789******99999966667778888888888888888888777665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.052
     DUF2976  27 gvillgLvlaavaflaVakaal 48 
                 +     L+l+++++laV  a++
  KIR64516.1 155 V----SLLLGVAGLLAVLAALI 172
                 3....44555555555544433 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   8.5     0.025   1.5e+02      15      81 ..      16      87 ..      14     110 .. 0.43
   2 ?    7.5   0.1    0.0008       4.8      13      85 ..     103     180 ..      99     183 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.025
     DUF4064 15 lgillglllllflfllssgefsqeltee..qalsgedasavleflstllivlgvi....aliaivlgivgall 81
                + i + ll++++l++l +  ++ +   +  q +++++a +++   ++l+++   +    a++++vl +v ++l
  KIR64516.1 16 VTISSYLLMFFALLQLLNLVTTIAVAGKlrQGFEDAFAGTAS-GAEGLGTFVVGFaigsAVLMLVLALVLVVL 87
                555555555555444444443333333255444444333333.223333333333000244444444444443 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0008
     DUF4064  13 gilgillglllllflfllssgefsqeltee........qalsgedasavleflstllivlgvialiaivlgivgalllkkn 85 
                 ++lg +l  ++++ +++  +g++      +        ++++ + ++a  ++ + + ++lgv++l+a ++ ++ + l k n
  KIR64516.1 103 WVLGGILLCCVGGSMINGAAGSMGGP---SaggdapsaEEIERSLTAALPSWYTPVSLLLGVAGLLAVLAALILLALPKAN 180
                 55666666666666555555553332...1345677788999999999999999999999999999999999999988877 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  11.5   0.00042       2.5      36     142 ..      70     179 ..      30     185 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00042
  Trp_oprn_chp  36 lsGadwapaltalAlvllAaavA.vlavrglgrrvvgvllalagagaavaalslltdpadaaraaa.aaatgvasaaaave..ltawpvlalaggvl 128
                   + G+ +  ++ al lv+lA +        ++  +v+g +l+ +  g +++++++ +++++a   a  a+ +   s +aa    +t++ +l  ++g+l
    KIR64516.1  70 AIGSAVLMLVLALVLVVLAIFNNrGSNGSRITTWVLGGILLCCVGGSMINGAAGSMGGPSAGGDAPsAE-EIERSLTAALPswYTPVSLLLGVAGLL 165
                   457777777778888888877652455678999***999888887877777777777666665555243.2322333333367889*********** PP

  Trp_oprn_chp 129 lllagvllllrars 142
                   ++la+++ll+ +++
    KIR64516.1 166 AVLAALILLALPKA 179
                   *******9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1042  (0.0581181); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2169.29
//
Query:       KIR64517.1  [L=203]
Description: hypothetical protein TK50_02270 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       981  (0.0547158); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 1557.86
//
Query:       KIR64518.1  [L=261]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-44  150.9   0.0    3.9e-44  150.5   0.0    1.2  1  adh_short       short chain dehydrogenase
    1.3e-29  103.4   0.0    2.2e-29  102.7   0.0    1.3  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    7.5e-11   42.3   0.1    1.1e-10   41.8   0.1    1.1  1  KR              KR domain
    2.3e-05   24.0   0.0    3.5e-05   23.4   0.0    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
     0.0012   18.8   0.7     0.0016   18.3   0.7    1.4  1  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
       0.15   11.6   0.0       0.19   11.3   0.0    1.2  1  NmrA            NmrA-like family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.0   1.3e-47   3.9e-44       3     189 ..       4     190 ..       2     195 .. 0.96

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 1.3e-47
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 +lvtGa++GIG ++a++la++G+ +v+v+r +++l+e a+el    g  + +i++D+++++ + ++ ++  +  +++d+LvnNAGi+ ++pf + s ++
  KIR64518.1   4 ALVTGATAGIGAEFARRLAADGWALVLVARDAARLAEKAAELTGRyGHPVEVIPADLSTADGCADVERRL-AGDEQVDLLVNNAGISLNQPFLRSSMAD 101
                 8*****************************************9999****************99987777.6779************************ PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                   r++ +N+++v+ ltra++  m+++  G+++nvsSvag+ pv  ++ Y AsKa v+++++s+    +p+g+rv+a++PG+++T+  ++
  KIR64518.1 102 ESRLLGLNVHAVLRLTRAAVGPMIRRGDGAVINVSSVAGFGPVMPGSTYPASKAWVTAFSESVDLATRPRGVRVMALCPGYTRTGAHER 190
                 ************************************************************************************98765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0   7.4e-33   2.2e-29       1     183 [.       8     192 ..       8     201 .. 0.95

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 7.4e-33
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                   Ga  gIG++ A++la+ G+ +vl+ ++ ++ +++++el+ ++g+ v  +++D +  + ++++ ++++ + +++D lvnnagi+ +  +pfl  s ++
    KIR64518.1   8 GATAGIGAEFARRLAADGWALVLVARDAARlAEKAAELTGRYGHPVevIPADLSTADGCADVERRLAGD-EQVDLLVNNAGISLN--QPFLRSSMAD 101
                   899****************************************88555*************99998887.8**************..********** PP

                   HHHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGST CS
  adh_short_C2  95 fdraldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgik 183
                     r l  n++++++l++aa+  ++++g g+++n+ssv++   v   + y a+Ka + a++ ++     p+g+Rv a +pg+++T a ++i 
    KIR64518.1 102 ESRLLGLNVHAVLRLTRAAVGpMIRRGdGAVINVSSVAGFGPVMPGSTYPASKAWVTAFSESVDLATRPRGVRVMALCPGYTRTGAHERIG 192
                   ******************9987999999***********99999999***************************************99875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.1   3.5e-14   1.1e-10       4     162 ..       5     163 ..       3     177 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 3.5e-14
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 l+tG++ g+G e+ar la++g   lvl++R+aa  +   ++ ael+ + g  vev++aD+s +d  + + +++  +e ++   ++ Ag++ ++++ + +
  KIR64518.1   5 LVTGATAGIGAEFARRLAADGW-ALVLVARDAARLA---EKAAELTGRyGHPVEVIPADLSTADGCADVERRLAGDE-QVDLLVNNAGISLNQPFLRSS 98 
                 9********************6.59******54333...3456666655*******************999998655.********************* PP

                 HHHHHHHHTTTTHHHHHHHHHTTT...S--S.EEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGawnLhelled...esld.ffvlfSSiagllgsagqanYaaaNaflDalaey 162
                 ++d  ++l   v+++  L ++      ++ d  ++ +SS+ag+   +  ++Y a  a++ a+ e+
  KIR64518.1  99 MADESRLLGLNVHAVLRLTRAAVGpmiRRGDgAVINVSSVAGFGPVMPGSTYPASKAWVTAFSES 163
                 ********************99887785555378889*****998999999***99999999875 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.2e-08   3.5e-05       1     124 [.       4     146 ..       4     167 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.2e-08
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HH...HH.HHHHHHHT-SEEEE--S--....-HHHHHHS CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrs...al.erlfkeeqpdavihlAavg....gvaassed 83 
                 +lVtGat  iG+ ++++l++ g+ ++ ++r+  + ++++ e l        e++ +dl  ++   ++ +rl  +eq+d  ++ A+++      + s+ d
  KIR64518.1   4 ALVTGATAGIGAEFARRLAADGWALVLVARDAARLAEKAAE-LtgryghpvEVIPADLSTADgcaDVeRRLAGDEQVDLLVNNAGISlnqpFLRSSMAD 101
                 59*********************999999994444433333.3699*****777777777776664414455566********997622224679**** PP

                 HHHHHHHHTHHHHHHHHHHH....HHTCTEEEEEEEGGGGTSCSS CS
   Epimerase  84 padfieknlqgtlnlleaar....kagvkrllflsSsevYGkdae 124
                  ++++  n++ +l+l  aa     ++g   ++++sS++ +G++ +
  KIR64518.1 102 ESRLLGLNVHAVLRLTRAAVgpmiRRGDGAVINVSSVAGFGPVMP 146
                 ******************996666555559******999998766 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.7   5.5e-07    0.0016       1      64 [.       8      79 ..       8     213 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.5e-07
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH....HHHCT..TTCEEEE--TT-C...CHHHHHHTT-SEE CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpekla....eleae..eglevvegdvtdv...edlaealkgadaV 64
                    GAt ++G + +++l+a+ g+++++++R++++la    el  +    +ev+ +d++++   +d+++ l+g + V
      KIR64518.1  8 GATAGIGAEFARRLAAD-GWALVLVARDAARLAekaaELTGRygHPVEVIPADLSTAdgcADVERRLAGDEQV 79
                    9****************.5*********887762211444222246788888888873345777777776665 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.3e-05      0.19       2      53 ..       5      61 ..       4      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.3e-05
                EESSTTSHHHHHHHHHHHHHT-EEEEEES-S..-SHHHHHHH...HSTTEEEES-TT CS
        NmrA  2 lviGaTGrqGksvvrallkaghkvralvRdt..kselakslk...eaGvelvkgdld 53
                lv+GaT  +G+ ++r l+++g+    + Rd     e+a++l      +ve++ +dl 
  KIR64518.1  5 LVTGATAGIGAEFARRLAADGWALVLVARDAarLAEKAAELTgryGHPVEVIPADLS 61
                79*****************************88566666665222578999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1980.61
//
Query:       KIR64519.1  [L=125]
Description: ArsR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-17   63.4   0.1      2e-17   62.8   0.1    1.3  1  HTH_5            Bacterial regulatory protein, arsR family
    5.3e-15   55.2   0.8      1e-14   54.3   0.8    1.5  1  HTH_20           Helix-turn-helix domain
    3.4e-06   26.8   0.2    6.1e-06   26.0   0.2    1.4  1  MarR_2           MarR family
    0.00028   20.4   0.0    0.00072   19.1   0.0    1.7  1  HTH_24           Winged helix-turn-helix DNA-binding
    0.00066   19.6   0.0     0.0013   18.6   0.0    1.4  1  MarR             MarR family
     0.0012   18.6   4.3     0.0056   16.5   2.7    2.5  2  HTH_IclR         IclR helix-turn-helix domain
     0.0042   17.2   0.3       0.01   15.9   0.0    1.8  2  AbiEi_4          Transcriptional regulator, AbiEi antitoxin
     0.0046   17.1   0.0      0.008   16.4   0.0    1.4  1  PaaX             PaaX-like protein
     0.0054   16.6   0.0      0.009   15.9   0.0    1.4  1  TrmB             Sugar-specific transcriptional regulator Trm
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.016   14.9   0.0    1.3  1  DUF4423          Domain of unknown function (DUF4423)
      0.013   15.4   0.5      0.052   13.5   0.5    2.0  1  HTH_Crp_2        Crp-like helix-turn-helix domain
      0.037   14.2   0.0      0.055   13.6   0.0    1.2  1  HTH_34           Winged helix DNA-binding domain
      0.053   13.5   0.1       0.14   12.2   0.1    1.7  1  HTH_1            Bacterial regulatory helix-turn-helix protei
      0.062   13.5   0.0      0.095   12.9   0.0    1.3  1  Fe_dep_repress   Iron dependent repressor, N-terminal DNA bin
      0.069   13.3   0.0       0.13   12.5   0.0    1.5  1  MCD_N            Malonyl-CoA decarboxylase N-terminal domain
       0.16   11.4   0.0       0.22   11.0   0.0    1.1  1  RepL             Firmicute plasmid replication protein (RepL)
       0.19   12.1   0.0       0.31   11.4   0.0    1.3  1  Penicillinase_R  Penicillinase repressor


Domain annotation for each model (and alignments):
>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.1   1.9e-20     2e-17       1      46 [.      41      89 ..      41      90 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 1.9e-20
                SHHHHHHHHHHTT...SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  1 dptRlkILklLae...gelcvcelaeelglsqstvShHLkkLreaGLVe 46
                dp+Rl++L+l ++   ge+cvc+l++ lglsq+tvShHL++L eaGL+e
  KIR64519.1 41 DPARLRLLSLIQSapeGEACVCDLTAPLGLSQPTVSHHLRILTEAGLLE 89
                8**********************************************87 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.8   9.9e-18     1e-14       3      60 ..      35      94 ..      33      95 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 9.9e-18
                HHHHHS-HHHHHHHHHH..STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTE CS
      HTH_20  3 iaeALahPvRrrilraL..araegltaselaerldlskntlsyHLrvLeeagLvevvreg 60
                +++ALa+P R+r+l+++  a+++++++ +l + l+ls+ t+s+HLr+L eagL+e+++ g
  KIR64519.1 35 VLKALADPARLRLLSLIqsAPEGEACVCDLTAPLGLSQPTVSHHLRILTEAGLLEREKRG 94
                79******************************************************9976 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.2   5.8e-09   6.1e-06       4      55 ..      41      92 ..      37      94 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 5.8e-09
                -HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2  4 tpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrp 55
                +pa +r+L  +  +p+++  v +l++ lgls+++vs +l+ L +aGL+er++
  KIR64519.1 41 DPARLRLLSLIQSAPEGEACVCDLTAPLGLSQPTVSHHLRILTEAGLLEREK 92
                5999*************99*******************************94 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   6.8e-07   0.00072       4      47 ..      43      88 ..      41      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 6.8e-07
      HTH_24  4 tdrkILelLqk..nprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                 ++++L+l+q   ++  +  +L   lglS++tv+ +l+ L+e+Gl+
  KIR64519.1 43 ARLRLLSLIQSapEGEACVCDLTAPLGLSQPTVSHHLRILTEAGLL 88
                5678888888888888888888888*******************97 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.2e-06    0.0013       7      51 ..      46      92 ..      42      93 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.2e-06
                HHHHHHHHSTTEEHH..HHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR  7 viLrilyeqgplsvs..eLakklgvskstvtrvldrLekkGlieRsk 51
                ++L ++ + ++      +L   lg+s++tv+  l+ L ++Gl+eR+k
  KIR64519.1 46 RLLSLIQSAPEGEACvcDLTAPLGLSQPTVSHHLRILTEAGLLEREK 92
                5555555555533334499999***********************97 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.1   2.2e+03      10      30 ..       2      22 ..       1      23 [. 0.72
   2 !   16.5   2.7   5.3e-06    0.0056       6      51 ..      45      91 ..      29      92 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.1
                CT-CTTBSS-BHHHHHHHHTS CS
    HTH_IclR 10 dalaeapqeltlselArrtgl 30
                +++++a  e+t  +++  +g 
  KIR64519.1  2 EYVGTALAEMTMPQISPLAGE 22
                667777788999888877775 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 5.3e-06
                HHHHCT-CTTBSS-.BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR  6 laiLdalaeapqel.tlselArrtglpkStvhRlLqtLvelGyveqd 51
                l++L ++ +ap++   + +l + +gl+ +tv+++L+ L+e G++e++
  KIR64519.1 45 LRLLSLIQSAPEGEaCVCDLTAPLGLSQPTVSHHLRILTEAGLLERE 91
                6889999999998548999**************************86 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       8.2   8.6e+03      17      24 ..      27      35 ..      26      37 .. 0.79
   2 !   15.9   0.0   9.9e-06      0.01      18      47 ..      63      97 ..      61      99 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 8.2
     AbiEi_4 17 relea.aGi 24
                +++e+ aG+
  KIR64519.1 27 ADAERlAGV 35
                788988886 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 9.9e-06
     AbiEi_4 18 elea.aGispsa....lrrLvrkGwLvrlrrGvYa 47
                +l+a +G+s  +    lr L+++G+L+r +rGv+a
  KIR64519.1 63 DLTApLGLSQPTvshhLRILTEAGLLEREKRGVWA 97
                88999*****888*********************9 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   7.6e-06     0.008      28      66 ..      63     101 ..      57     105 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.6e-06
        PaaX  28 rllaelGiseslvRaalsRlakaGwlvrekegrrsfYrL 66 
                  l+a+lG+s+ +v   l  l++aG+l rek g  ++YrL
  KIR64519.1  63 DLTAPLGLSQPTVSHHLRILTEAGLLEREKRGVWAYYRL 101
                 689***********************************9 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.6e-06     0.009      21      66 ..      57     103 ..      49     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.6e-06
                 CCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST.TTEEEE-- CS
        TrmB  21 gpatadeiaeelgvprskvYevLrsLedkGlVerekgr.pklYravd 66 
                 g+a + ++   lg+++++v   Lr L ++Gl erek+    +Yr v+
  KIR64519.1  57 GEACVCDLTAPLGLSQPTVSHHLRILTEAGLLEREKRGvWAYYRLVP 103
                 677777888999************************88566888887 PP

>> DUF4423  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.6e-05     0.016      24      77 ..      45      97 ..      23     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.6e-05
     DUF4423 24 pvirellp.lkdfkadpeelakrlrpkisaeevekalefLlklgllkkdedgkyr 77
                + +++l++ +++++a +  l   l+  +s+  v++ l++L+++gll++++ g + 
  KIR64519.1 45 LRLLSLIQsAPEGEACVCDLTAPLG--LSQPTVSHHLRILTEAGLLEREKRGVWA 97
                5666765404455888999999999..************************9995 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.5   4.9e-05     0.052      29      56 ..      66      93 ..      30      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.9e-05
                HHTTSSHHHHHHHHHHHHHTTSEEETEE CS
   HTH_Crp_2 29 smlGltretvsrilseLkreglisrgrr 56
                + lGl++ tvs  l+ L ++gl++r++r
  KIR64519.1 66 APLGLSQPTVSHHLRILTEAGLLEREKR 93
                559*********************7533 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.3e-05     0.055       2      49 ..      44      93 ..      43      98 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.3e-05
      HTH_34  2 RlavlsyLas..vdeadfvelkealeatdgnLsvhlkkLekagYievdke 49
                Rl +ls+  s  + ea+  +l + l++++   s hl++L +ag +e++k 
  KIR64519.1 44 RLRLLSLIQSapEGEACVCDLTAPLGLSQPTVSHHLRILTEAGLLEREKR 93
                889999988888899*******************************9996 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00013      0.14      23      52 ..      68      94 ..      66     107 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
                HTS-HHHHHHHHHHHHHHHTS-SEEESSSE CS
       HTH_1 23 LglsqpavsrqikrLEeelgvpLfeRtgrg 52
                Lglsqp+vs++++ L e   + L+eR +rg
  KIR64519.1 68 LGLSQPTVSHHLRILTE---AGLLEREKRG 94
                8**********998865...4577776666 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.1e-05     0.095      26      57 ..      62      93 ..      51      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.1e-05
                    HHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
  Fe_dep_repress 26 kdlaerLnvspssVsemlkkLekdGyveyeky 57
                     dl   L+ s ++Vs  l+ L ++G++e ek+
      KIR64519.1 62 CDLTAPLGLSQPTVSHHLRILTEAGLLEREKR 93
                    5778889*********************9986 PP

>> MCD_N  Malonyl-CoA decarboxylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00012      0.13      22      59 ..      30      67 ..      20      85 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
                HHHHHHHHHHCSBHHHHHHHHHTTSTTHHHHHHHHHHH CS
       MCD_N 22 ekaeeeLrealeprrqeLlrrlnlapgGvkfLVdmRad 59
                e+ +  L++ + p r++Ll+ +++ap+G + ++d+ a 
  KIR64519.1 30 ERLAGVLKALADPARLRLLSLIQSAPEGEACVCDLTAP 67
                46677899999********************9999765 PP

>> RepL  Firmicute plasmid replication protein (RepL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00021      0.22      85     113 ..      68      96 ..      60     106 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
        RepL  85 tgislktvsetlkileeanilkkkanGvl 113
                  g+s  tvs+ l+il ea++l ++  Gv 
  KIR64519.1  68 LGLSQPTVSHHLRILTEAGLLEREKRGVW 96 
                 58999**********************96 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00029      0.31      27      63 ..      64     100 ..      57     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00029
                      --GGG---HHHHHHHHHHHHHTTS-EEEEETTEEEEE CS
  Penicillinase_R  27 leeekelaysTVktllrrLvkKgllsrekegrafiYs 63 
                      l ++  l++ TV   lr L++ gll+rek g    Y+
       KIR64519.1  64 LTAPLGLSQPTVSHHLRILTEAGLLEREKRGVWAYYR 100
                      7788999***********************9988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 993.24
//
Query:       KIR64520.1  [L=517]
Description: hypothetical protein TK50_02305 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.057   13.7   2.4       0.34   11.2   0.6    2.9  3  DUF11            Domain of unknown function DUF11
      0.073   12.9   0.0        9.8    6.1   0.0    3.2  3  Bac_rhamnosid_C  Bacterial alpha-L-rhamnosidase C-terminal do
      0.098   13.0   1.8        9.6    6.5   0.3    3.3  4  CBM_6            Carbohydrate binding module (family 6)
        0.1   12.4   0.4       0.21   11.4   0.4    1.4  1  DUF4748          Domain of unknown function (DUF4748)


Domain annotation for each model (and alignments):
>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.2   8.8e+02       9      34 ..     171     196 ..     165     198 .. 0.86
   2 ?   -1.9   0.0      0.92   4.1e+03      26      55 ..     284     313 ..     278     333 .. 0.58
   3 ?   11.2   0.6   7.6e-05      0.34       7      52 ..     335     393 ..     319     444 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.2
       DUF11   9 evrpGdtvtytltvtNtgpasangvv 34 
                  ++pG+  +  ltv N g ++ +gvv
  KIR64520.1 171 SAAPGGSFEAPLTVVNVGEKAVEGVV 196
                 57899999999*********999987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.92
       DUF11  26 gpasangvvvtDtlPaglayvsvsas..qgta 55 
                 g+ sa +++++D  P+ l++  +++   +g++
  KIR64520.1 284 GTGSA-KLTLRD-APQKLRAAAAQTDtdRGNN 313
                 55555.667777.5666666666655333333 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 7.6e-05
       DUF11   7 ksevrpGdtvtytltvtNtgpasangvvvtDtl........Paglayvsvsas......q 52 
                 ++e ++G+ vt t+ ++N+gpa++ ++   D+         Pag+++v+v a       +
  KIR64520.1 335 TVEGAAGAVVTATVGFRNNGPATL-NYIRGDMSvtyldvdvPAGTTAVEVPAEcaprsgN 393
                 557789******************.77777776788888889999999998885555441 PP

>> Bac_rhamnosid_C  Bacterial alpha-L-rhamnosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.041   1.8e+02      17      44 ..     295     322 ..     282     330 .. 0.80
   2 ?    6.1   0.0    0.0022       9.8      34      66 ..     354     386 ..     351     395 .. 0.76
   3 ?   -0.2   0.0       0.2   8.8e+02      28      66 ..     433     471 ..     427     478 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.041
                      --BTTB-EEEEEEEETTEEEEEEEEEE.T CS
  Bac_rhamnosid_C  17 kpggdlksvkasfeslyGkikvdWkre.d 44 
                       p++ l+ + a+ ++ +G+  ++W+++  
       KIR64520.1 295 APQK-LRAAAAQTDTDRGNNYTSWNITvT 322
                      4554.99*****************99854 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0022
                      EEEEEEEEEETTEE.EEEEEE-TT-EEEEEEE-S CS
  Bac_rhamnosid_C  34 GkikvdWkredgkf.tlnvsvPanttaeVvLpge 66 
                      G+ + ++ r d+++  l+v+vPa+tta V +p e
       KIR64520.1 354 GPATLNYIRGDMSVtYLDVDVPAGTTA-VEVPAE 386
                      66677777888888568*********9.556665 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.2
                      EEEETTEEEEEEEEEE.TTEEEEEEEE-TT-EEEEEEE-S CS
  Bac_rhamnosid_C  28 sfeslyGkikvdWkre.dgkftlnvsvPanttaeVvLpge 66 
                       ++   G+i v+ k+e +g f+ +++ Pan +a +v++ +
       KIR64520.1 433 VVPNAQGTILVNAKCEcEGGFRDDLK-PANDRALIVVNAD 471
                      56777899999999999999999988.9999999988765 PP

>> CBM_6  Carbohydrate binding module (family 6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.68     3e+03      39      59 ..     128     148 ..      80     168 .. 0.70
   2 ?    6.5   0.3    0.0021       9.6      19     101 ..     249     327 ..     237     337 .. 0.80
   3 ?   -1.8   0.0      0.79   3.6e+03      23      46 ..     356     379 ..     336     395 .. 0.69
   4 ?    3.4   0.0     0.019        86      50      77 ..     414     445 ..     390     455 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.68
                 EEESSTEEEEEEEEEEESSSE CS
       CBM_6  39 vdfgsggaysvearvasgaag 59 
                  ++g++g+ +++ +va + +g
  KIR64520.1 128 AKLGDSGELKISLQVAGKQRG 148
                 455556666666666655555 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0021
                 TTTSEEEE---TT-EEEEEEEEESSTEEEEEEEEEEESSSEEEEEEEESSTTSSEEEEEEE---SSTTEEEEEEEEEEE-SEE CS
       CBM_6  19 agggkavgyinnGdwlaYkdvdfgsggaysvearvasgaaggsielrldsatgtlvgtvsvpstggwqtyvtvsanvtlptGv 101
                 ++ g++ g+ + + + +++d+  g   +  + ar+a+ ++ gs +l l +a  +l + ++ + t + ++y++   +vt + G+
  KIR64520.1 249 YAPGRQYGNAEFMTYADFEDLF-GLRED--AGARAAARGT-GSAKLTLRDAPQKLRAAAAQTDTDRGNNYTSWNITVTGKNGT 327
                 4578888888888888888765.65555..5677777776.5888999898999999999999***************99998 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.79
                 EEEE---TT-EEEEEEEEESSTEE CS
       CBM_6  23 kavgyinnGdwlaYkdvdfgsgga 46 
                  +++yi+    ++Y dvd+++g +
  KIR64520.1 356 ATLNYIRGDMSVTYLDVDVPAGTT 379
                 445566655668888888888776 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.019
                 EEEEEESSSEEEEEEEESS....TTSSEEEEE CS
       CBM_6  50 earvasgaaggsielrlds....atgtlvgtv 77 
                 + +va ++++g + lr+d     a+gt++ ++
  KIR64520.1 414 TISVAGETSTGDFRLRIDKvvpnAQGTILVNA 445
                 3789**************95544455554444 PP

>> DUF4748  Domain of unknown function (DUF4748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   4.6e-05      0.21      10      25 ..     495     510 ..     490     511 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.6e-05
     DUF4748  10 gslcvaGigayyfAKr 25 
                 g+l+vaG+g y +AKr
  KIR64520.1 495 GLLLVAGVGGYLLAKR 510
                 799************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4018.90
//
Query:       KIR64521.1  [L=70]
Description: hypothetical protein TK50_02310 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      146  (0.00814323); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 597.02
//
Query:       KIR64522.1  [L=127]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-31  107.6  17.6    5.3e-31  107.4  17.6    1.0  1  Phage_holin_4_2  Mycobacterial 4 TMS phage holin, superfamily
  ------ inclusion threshold ------
          1    8.8   6.2        5.5    6.4   6.2    1.9  1  DUF1129          Protein of unknown function (DUF1129)
        1.1    9.1   8.8        4.4    7.2   8.8    2.1  1  DUF4605          Domain of unknown function (DUF4605)


Domain annotation for each model (and alignments):
>> Phage_holin_4_2  Mycobacterial 4 TMS phage holin, superfamily IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4  17.6     9e-35   5.3e-31       1     105 []       1     115 [.       1     115 [. 0.96

  Alignments for each domain:
  == domain 1  score: 107.4 bits;  conditional E-value: 9e-35
  Phage_holin_4_2   1 mrfllrllvnalallvaalllpgvevas......fltallaalvlgllnalvkpilkllslpltiltlGlftlvinalmlllaaalvsg....f 84 
                      m+fl+rl+++a+al++++l++pgv+v++       lt++ +al++g++na++kp++k++ + +++ltlGlf+lv+nal++ll++++ ++    f
       KIR64522.1   1 MGFLIRLAITAIALWITTLIVPGVDVGGrsggntALTLVAVALIFGVVNAVLKPVIKVVGCVFYLLTLGLFALVVNALLFLLTDWIARHldlpF 94 
                      89************************77799998889999***********************************************889999* PP

  Phage_holin_4_2  85 evdgfwsallgaliisvvsav 105
                      +v+gfw+a++ga++++vv+++
       KIR64522.1  95 RVEGFWPAFWGAIVMAVVTWL 115
                      *******************96 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.2   0.00092       5.5      87     166 ..      36     120 ..      33     126 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00092
     DUF1129  87 lllalfallfgilalfskkkqtas...iGlitlllvalvgGlamvlvyrlltre.kkkkkrpplwkr.llilllllvvwlvlftl 166
                 l l+ +al+fg+++++ k   +       l+tl l+alv+ ++++l+ +++ r+ +   + +++w   + ++++++v wl+ +++
  KIR64522.1  36 LTLVAVALIFGVVNAVLKPVIKVVgcvFYLLTLGLFALVVNALLFLLTDWIARHlDLPFRVEGFWPAfWGAIVMAVVTWLISVAV 120
                 45677888999998887766666556666999999*******************6333344556655156788999999988766 PP

>> DUF4605  Domain of unknown function (DUF4605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   8.8   0.00074       4.4      21      56 ..      48      84 ..      33      87 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00074
     DUF4605 21 gekvvePvv.lvlllllllflGlrGlllvgllcfviq 56
                 + v++Pv+ +v+ ++ ll lGl++l+  +ll++++ 
  KIR64522.1 48 VNAVLKPVIkVVGCVFYLLTLGLFALVVNALLFLLTD 84
                5789999863778999*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 1078.86
//
Query:       KIR64523.1  [L=340]
Description: fructose-bisphosphate aldolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-82  274.6   0.2    1.1e-81  274.5   0.2    1.0  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.5   0.2   5.9e-86   1.1e-81       3     279 ..       9     336 ..       7     337 .. 0.90

  Alignments for each domain:
  == domain 1  score: 274.5 bits;  conditional E-value: 5.9e-86
                    HHHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-........HHHHHHHHHHHHHHHHT...-EEEEEE----G.. CS
  F_bP_aldolase   3 lkellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyag........gaealaelvraaaeaykkasvpvalhlDHgak.. 88 
                    + e+l++Ak+++ya++a+nvt+++t++a+l+++++a+s+ I+q+s+g+a++ +g        ga a+a++++++a++y+   v+valh+DH+ k  
     KIR64523.1   9 YAEMLDRAKAGRYAYPAINVTSSQTLNAALKGFADAESDGIIQVSTGGAEYLSGpsvkdmvtGAVAFAAYAHEVAKKYP---VNVALHTDHCPKdk 101
                    579**********************************************99988**********************887...************99 PP

                    ........HHHHHHHHHH........S-SEEEE--TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-----------..TT-TTTS--HHHHHHHHHH CS
  F_bP_aldolase  89 ........leglkkaiea........gfsSvMiDgSelpleeNialtkevverahalgvsvEaElGriggeedgv..vaeeklyTdpeeaeefvee 166
                            +    +  ++        +f+S+M+DgS+ p++eN+++++e+++ra+++++++E+E+G++ggeedgv  + ++klyT++e+  ++ve+
     KIR64523.1 102 ldkfvrplM----QISKErvaagqepLFQSHMWDGSAVPVAENLEIAAELLDRAAEAKIVLEIEVGVVGGEEDGVenAINDKLYTTVEDGLAMVEA 193
                    888855542....33333555577779************************************************7766888************** PP

                    HH.....-EEEE--SS---SS--SS...--THHHHHHHHHH.........--SEE-SGTTS-HHHHHHHHHTTEEEEEE-HHHHHHHHHHH..... CS
  F_bP_aldolase 167 tg.....vdalAvaiGnvHGvykpk.pkLdferlkeiqkav.........vplVlHGgsgvpdeeirkaiklGvvKiNidtdlrlaytkav..... 242
                    +g      ++ A ++GnvHGvykp+  kL++e+l++iq+av          +lV+HGgsg+  +eir+a ++GvvK+Nidtd+++a+t+ v     
     KIR64523.1 194 LGlgekgRYMAALTFGNVHGVYKPGnVKLRPEILNNIQEAVaakygkekpLSLVFHGGSGSLLSEIREALDYGVVKMNIDTDTQYAFTRPVadhmf 289
                    *************************555****************999944447**************************************55444 PP

                    HHG....G.....E-HH.H-HHHHHHHHHHHHHHHHHHHHHHTT-SS CS
  F_bP_aldolase 243 kke....k.....enkk.ydprkllkeaeeamkevvkekiellgsag 279
                    +++    k     +nkk ydpr + k ae+ ++++v e++e l+s+g
     KIR64523.1 290 RNYdgvlKidgevGNKKqYDPRTWGKLAEAGLAARVVEACEHLRSTG 336
                    444555515566778888*************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2541.79
//
Query:       KIR64524.1  [L=142]
Description: hypothetical protein TK50_02330 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-54  182.4   1.8    3.6e-54  182.2   1.8    1.0  1  DUF3151   Protein of unknown function (DUF3151)


Domain annotation for each model (and alignments):
>> DUF3151  Protein of unknown function (DUF3151)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.2   1.8     2e-58   3.6e-54       2     125 ..       7     136 ..       6     138 .. 0.94

  Alignments for each domain:
  == domain 1  score: 182.2 bits;  conditional E-value: 2e-58
     DUF3151   2 epppvlLpedeeaeaalaageda......aevaaahpasslaWallaeealaegeavaaYAyaRtGyhrgLdaLRrnGWkGaGpvpwshepnrGfLral 94 
                 epp++lLp+++ea++alaa+++a      aevaa++p+ s+ W +la++ala+g+ v aYAyaRtGyhrgLd+LRr+GWkG+Gpvpwsh+pnrGfLr+l
  KIR64524.1   7 EPPATLLPAHDEADTALAAAKEAgtdeayAEVAARFPTYSAGWGALASRALADGQVVPAYAYARTGYHRGLDQLRRSGWKGHGPVPWSHAPNRGFLRCL 105
                 6899*************88877755444455******************************************************************** PP

     DUF3151  95 aaLaraaeaigeedEaercrqlledsdpeaa 125
                 ++L+raa +ige+dEa+rc+q+l+d+dp+a 
  KIR64524.1 106 YVLSRAAGEIGEADEAARCAQFLRDCDPAAG 136
                 ****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1007.36
//
Query:       KIR64525.1  [L=833]
Description: chromosome partitioning protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00015   21.8   0.0    0.00029   20.8   0.0    1.4  1  AAA_31    AAA domain
     0.0041   16.7   0.5      0.007   15.9   0.5    1.3  1  DUF4400   Domain of unknown function (DUF4400)
  ------ inclusion threshold ------
      0.017   15.2   0.0      0.024   14.7   0.0    1.3  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain


Domain annotation for each model (and alignments):
>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   4.9e-08   0.00029       3     169 ..     587     758 ..     585     766 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4.9e-08
      AAA_31   3 vIaianqKGGvGKTTtsvnlaaala.klgkkvLlvDlD.pQanattglgiekneiektlyevl.........i.eeknikeaiiktkvenldlipssid 89 
                  ++++n KGG GKT   + la+++  k+g  vL  D   +Q+ + ++++  ++  ++t+ ++l           +  ++++++ ++   + d++ s+ +
  KIR64525.1 587 QVTVVNPKGGAGKTVAILLLAMTFGqKRGGYVLAWDNNeTQGTLGMRAQ--QDFHSRTVRDMLrdlgqfqgaHgRVGDLSQYVRSQGEGMFDVLASDES 683
                 689*********************9899*******97426666666554..444556666664443454554335667777777555666699888887 PP

      AAA_31  90 LaeaeielvelekkeeilkellekvkdeYDyiiiDcpPsLgllt.enaLvasdsviipvqaeayaleGleqllktieevkk 169
                   + e+         +++ e+ e v+  Y +i++D+  ++   + + a+ a d++++ + a++ + e+++++l+++e+  +
  KIR64525.1 684 ATGGEMLT------ASAFAEIREVVSRFYKLIFVDTGNNVRAQNwQAAMDATDQLVVTMSARNDSAETAARMLDHLEQSGR 758
                 76666543......44556666778888*********99988752778999**********************99998755 PP

>> DUF4400  Domain of unknown function (DUF4400)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.5   1.2e-06     0.007      13      99 ..     678     756 ..     667     773 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-06
     DUF4400  13 vlrtElgylsaeftrslllgepaaetaterantayewlfvksGllewlqalkqsasssgtnslaksvsegrefsaalselvasleey 99 
                 + ++      + +t  ++l ++a +++ e++ ++y+++fv++G     q+++++ +++ +  + ++ +++ +  ++++++  +le+ 
  KIR64525.1 678 LASD------ESATGGEMLTASAFAEIREVVSRFYKLIFVDTGNNVRAQNWQAAMDATDQ-LVVTMSARN-DSAETAARMLDHLEQS 756
                 4444......48999999999999***************************998666654.444555555.3334455555555553 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.1e-06     0.024       1      38 [.     588     627 ..     588     785 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.1e-06
                 EEEEESSTTSSHHHHHHHHHHHHHH.TT--EEEEE.EEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxx RF
        CbiA   1 iaiastkGGvGKTtlaanLaralar.rglrVllvD.aDpq 38 
                 +++++ kGG+GKT+  + La  + + rg  Vl+ D   +q
  KIR64525.1 588 VTVVNPKGGAGKTVAILLLAMTFGQkRGGYVLAWDnNETQ 627
                 689********************99789999999944444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 5309.72
//
Query:       KIR64526.1  [L=351]
Description: hypothetical protein TK50_02340 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00011   21.8   0.0    0.00021   20.9   0.0    1.4  1  DAGK_cat  Diacylglycerol kinase catalytic domain
      0.006   16.5   0.8      0.006   16.5   0.8    2.5  2  BAT       GAF and HTH_10 associated domain
  ------ inclusion threshold ------
       0.03   15.0   0.7       0.12   13.0   0.1    2.3  2  Imm1      Immunity protein Imm1
       0.32   11.1   1.6       0.73   10.0   0.0    2.4  2  DUF826    Protein of unknown function (DUF826)


Domain annotation for each model (and alignments):
>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.6e-08   0.00021      54     124 ..     116     208 ..      68     210 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.6e-08
                 CC-SEEEEEESHHHHHHHHHHHCTHHCTT.................SEEEEEE-.....SS--HHHHHCT--SSHHHHHHCHHCTBEEEEEEE CS
    DAGK_cat  54 egvdlivvaGGDGtvsevlnglleelatk.................pplgiiPl.....GtgNdlaralgigkdieealesiikgetrkvdvg 124
                 ++++l+v+   DG +++v+  l++++a +                 pp+g++Pl     G   dla +lg+++d+ + + ++++g++r++d++
  KIR64526.1 116 SKTRLVVATASDGQLRAVVRRLVRRYAPPpsrrpadlpgnrtvpdlPPVGVLPLdparaGGQRDLAAQLGLPRDPAAVAAAVLDGTVRRLDLL 208
                 48899*******************4444456677888999999999*******655555*******************************986 PP

>> BAT  GAF and HTH_10 associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.8   1.3e-06     0.006      89     133 ..      71     141 ..      43     144 .. 0.92
   2 ?    0.6   6.7       0.1   4.6e+02      61     130 ..     262     330 ..     180     335 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-06
         BAT  89 lastlaehGgtvrsaeae..........................dgrarlvvevPpgadvRsvvealeery 133
                  a +l+++G++v++++a+                          d+ +rlvv  +++ ++R+vv++l +ry
  KIR64526.1  71 CADALTARGARVETVTARsdaeidevlarldgpprpdgltwpdpDSKTRLVVATASDGQLRAVVRRLVRRY 141
                 4679******************************************************************9 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.1
         BAT  61 dldavedvrvvseeddg.tlleltvsgpslastlaehGgtvrsaeaedgrarlvvevPpgadvRsvveale 130
                  +   + + +++++d +  l+e++v+  +++ t ++ G    ++e+++ r+r v+ vP+++ v  + +++e
  KIR64526.1 262 GYARLDGLPLLTTGDPTdGLVEVAVA--VPVVTRSTLGRKRVRFEVRRARGRAVAVVPRDERVPYLDDGVE 330
                 34444444555555543489****96..56778899999999*****************998876666665 PP

>> Imm1  Immunity protein Imm1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.8e-05      0.12       3      84 ..      83     151 ..      81     195 .. 0.71
   2 ?   -0.4   0.0      0.39   1.7e+03      45      65 ..     250     269 ..     218     324 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.8e-05
        Imm1   3 epvtvstpeEvdalidrlaadgagqavesvveladagdewgpp.....Levgvggdaglgglvylsgeddgpvsssngdppdseevv 84 
                 e vt+++++E+d++++rl++++ + +       +       +p     L+v+  +d++l ++v+           + ++pp+  +++
  KIR64526.1  83 ETVTARSDAEIDEVLARLDGPPRPDGLT-----W------PDPdsktrLVVATASDGQLRAVVRRLVR-------RYAPPPSRRPAD 151
                 5799****************99996663.....3......3334444599999999977777665444.......444444444444 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.39
        Imm1  45 p..Levgvggdaglgglvylsge 65 
                    L  ++g++a   g+ +l+g 
  KIR64526.1 250 DplLACAIGNAA---GYARLDGL 269
                 134666677777...66666554 PP

>> DUF826  Protein of unknown function (DUF826)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00016      0.73      35      59 ..      86     127 ..      81     130 .. 0.76
   2 ?   -2.0   0.4       0.9     4e+03      40      60 ..     247     267 ..     240     270 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00016
      DUF826  35 esqiDaeVDavLaeLlGvaa.................asasd 59 
                  ++ Dae+D+vLa L G++                  a+asd
  KIR64526.1  86 TARSDAEIDEVLARLDGPPRpdgltwpdpdsktrlvvATASD 127
                 5899*************9977766666666666666555555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.9
      DUF826  40 aeVDavLaeLlGvaaasasdd 60 
                 a  D  La  +G aa+ a  d
  KIR64526.1 247 AGDDPLLACAIGNAAGYARLD 267
                 555788999999999877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2487.82
//
Query:       KIR64527.1  [L=429]
Description: adenylosuccinate synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-177  590.7   0.0   1.8e-177  590.5   0.0    1.0  1  Adenylsucc_synt  Adenylosuccinate synthetase


Domain annotation for each model (and alignments):
>> Adenylsucc_synt  Adenylosuccinate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  590.5   0.0  9.9e-182  1.8e-177       1     418 [.       4     421 ..       4     422 .. 0.99

  Alignments for each domain:
  == domain 1  score: 590.5 bits;  conditional E-value: 9.9e-182
                      .EEEE-SSS-S-HHHHHHHHHTT-SEEEE-SB-TTSSEEEE.ETTEEEEESSS-GGGGSTT-EEEE-TTBEE-HHHHHHHHTTSS-TT...... CS
  Adenylsucc_synt   1 vvvvGaqwGDEGKGkivDllaeeadvvvRfqGGanAGHtvv.vdgkkyklhllpSGilnpgvvnviGngvvvdpealleEieeleakgvelske 93 
                      +v++GaqwGDEGKGk++Dll e++d+vvR++GG+nAGHtv+  dg+ky+lhl+pSG+l+p+++ +iGngvvvdp++ll+Ei+ l+++gv++  +
       KIR64527.1   4 IVLIGAQWGDEGKGKVTDLLGERVDYVVRYSGGNNAGHTVItPDGQKYALHLMPSGALSPSAMIIIGNGVVVDPKVLLTEIDGLAERGVDV--S 95 
                      589**************************************99**********************************************99..6 PP

                      TEEEETTSEE--HHHHHHHHHHHHH----------TTHHHHHHHHHTT---BGGGGGSHHHHHHHHHHHHHHTHHHHHHT....T-----HHHH CS
  Adenylsucc_synt  94 rllisdrahlvlpyhkalDkleeaakgkkkiGtTkkGiGpayadkvarrgirvgdlldeeeleeklekllelknkllekldk.eeleveellee 186
                      rl+is +ahl++p+h+alD++ e+  g+++iGtT++GiGpay dkvar+gir++dlld+  l++kle +l++kn++l k+++ ++++v++++ee
       KIR64527.1  96 RLRISGDAHLIMPHHRALDRVVERYLGSARIGTTGRGIGPAYGDKVARMGIRLQDLLDPGILRKKLELALREKNQILFKVYNrKAIDVDATVEE 189
                      *************************999*************************************************9999989********** PP

                      HHHHHHHHGGGEE-HHHHHHHHHHTT--EEEE--S-GGG-TTTSSTTSS-SS--SHHHHHHHTT--GGGEEEEEEEEESSEEESSSS--TTB-- CS
  Adenylsucc_synt 187 llkyaerlkpyvvdtvallnealkegkkvLfEGaqgtllDidhGtYPfvTsSnttaggaltglglapkkidevlgvvKAyttrvGeGpfptelk 280
                      +l+yaerlkpy+++t  +l +al++g++vL+EGaq+t+lD+dhGtYPfvTsSn+tagga++g+g++p++i++v+ v KAyttrvG+Gpfptel+
       KIR64527.1 190 YLAYAERLKPYIAETRVMLWDALDRGETVLLEGAQATMLDMDHGTYPFVTSSNPTAGGACVGAGIPPTAINKVIAVSKAYTTRVGSGPFPTELF 283
                      ********************************************************************************************** PP

                      SHHHHHHHHHTT-B-TTT--B-EEE-EEHHHHHHHHHHHT-SEEEEE-GGGGTT-SEEEEEEEEEETTEEESS--S.....-GEEEEEEEEE-- CS
  Adenylsucc_synt 281 devgeklrekGkEfgtttgrpRrcGwlDlvllryavrvngvtelaltklDvldgldeikvcvaYkldgkeldefpasleelekvepvyeelpgW 374
                      d+ g++lr++G+E+gtttgr+RrcGw+D+v++rya+r+ngvt+l++tklDvl+gl+++ +cv+Y+++g+++d++p++++++++++p+yee +gW
       KIR64527.1 284 DDNGQHLRKVGHEYGTTTGRERRCGWFDAVVARYACRLNGVTDLVITKLDVLTGLPKVPLCVGYEINGERFDDMPMTQTDFHHATPIYEEHDGW 377
                      ********************************************************************************************** PP

                      .S--TT---GGGS-HHHHHHHHHHHHHHTS-EEEEE-SSSTT-E CS
  Adenylsucc_synt 375 kedisgvrsfedlpenakkyvefieellgvpvkiisvGpereqt 418
                       edi+++r+ ++lpena++y+++ieel+g++v++++vGp+re+ 
       KIR64527.1 378 WEDITKARTEDELPENARRYIARIEELCGTRVSVVGVGPGREEN 421
                      *****************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.19s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3341.01
//
Query:       KIR64528.1  [L=416]
Description: phosphoribosylamine--glycine ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-61  207.2   0.0    2.8e-61  206.7   0.0    1.3  1  GARS_A       Phosphoribosylglycinamide synthetase, ATP-grasp 
    3.6e-30  104.6   1.0      9e-30  103.3   1.0    1.7  1  GARS_N       Phosphoribosylglycinamide synthetase, N domain
    1.2e-22   80.0   2.8    1.2e-22   80.0   2.8    2.1  2  GARS_C       Phosphoribosylglycinamide synthetase, C domain
      8e-06   26.0   0.0    2.6e-05   24.3   0.0    1.9  1  ATP-grasp_3  ATP-grasp domain
    0.00014   21.5   0.0    0.00021   20.9   0.0    1.2  1  ATP-grasp    ATP-grasp domain
  ------ inclusion threshold ------
      0.082   12.3   0.0       0.16   11.4   0.0    1.5  1  ATP-grasp_5  ATP-grasp domain


Domain annotation for each model (and alignments):
>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.7   0.0   9.5e-65   2.8e-61       1     194 []     101     283 ..     101     283 .. 0.98

  Alignments for each domain:
  == domain 1  score: 206.7 bits;  conditional E-value: 9.5e-65
                 HBHHHHHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---SEEEEEEEE CS
      GARS_A   1 asKsfakdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleGeEvsllal 99 
                 +sK+fakd++++ag+pta+  + td+e     ++e++ +  VvK+dglaagKgv+v+++++ al++++e       G    +vv+Ee+l G Evsl+++
  KIR64528.1 101 GSKAFAKDVMTAAGVPTARAYTCTDQEGTARALDEFGPPY-VVKNDGLAAGKGVVVTDDRAAALAHAAEC------G----RVVVEEYLAGPEVSLFVV 188
                 69*************************************9.**********************9999875......5....8***************** PP

                 ECTTEEEE---BEEEEEEECCCEEEEECECEEEES-TTS-HHHHHHHHHHTHHHHHHHHHCTT---EEEEEEEEEEETTEEEEEEEESS--TTCH CS
      GARS_A 100 vdgktvkplplaqdhkrvlegDkgpnTGGmGayspapvvteellekikeeileptveglkkegipfkGvLyaglmlvedgpkvlefnvRfgDpet 194
                 +dg+   pl +aqd+krv++gD gpnTGGmGay+p+p++++ l+++++  +++pt+ +++++g+pf G+Ly+gl +++ gp+v+efn+RfgDpet
  KIR64528.1 189 TDGEAALPLLPAQDFKRVGDGDAGPNTGGMGAYAPLPWAPPGLVDEVMADVVHPTLAEMRRRGTPFSGLLYVGLAMTAAGPRVIEFNARFGDPET 283
                 **********************************************************************************************8 PP

>> GARS_N  Phosphoribosylglycinamide synthetase, N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   1.0     3e-33     9e-30       1      90 []       1     100 [.       1     100 [. 0.93

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 3e-33
                 EEEEEEESSHHHHHHHHHHTTSTTESEEEEEE--CGG...........TTHHHHHHHHHHCTESEEEE-SHHHHHTTHHHHHHHHHT-EEES--CCCCH CS
      GARS_N   1 mkvLvvGsGGRehalawklaqspkvekvyvapgNagt...........edlealvefakeekidlvvvGpeapLvaGvadaleeekgikvfGpskeaAq 88 
                 m+vL++G+GGRehala  la +p ve +++apgN+g+           +d +a++++a e+++dlvv+GpeapLvaGvada++++ gi++fGps+eaA+
  KIR64528.1   1 MRVLLLGGGGREHALALGLAADPAVEGLIAAPGNPGIaevaelrsvdaADPAAVAALAVETGVDLVVIGPEAPLVAGVADAVRAK-GIAAFGPSAEAAR 98 
                 9************************************8887777766655568*****************************777.************* PP

                 HH CS
      GARS_N  89 lE 90 
                 lE
  KIR64528.1  99 LE 100
                 *9 PP

>> GARS_C  Phosphoribosylglycinamide synthetase, C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       1.6   4.6e+03      36      62 ..      78     104 ..      49     114 .. 0.72
   2 !   80.0   2.8     4e-26   1.2e-22       1      79 [.     319     405 ..     319     406 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.6
                 EE-SSEEEEEEEEESSHHHHHHHHHHH CS
      GARS_C  36 vtsGGRvlavvavgetleeArakayea 62 
                 v++  R  ++ a g + e+Ar +  +a
  KIR64528.1  78 VADAVRAKGIAAFGPSAEAARLEGSKA 104
                 666777788888888888888665555 PP

  == domain 2  score: 80.0 bits;  conditional E-value: 4e-26
                 EEEEEEEETTTTSS--ST-EEBS.TTEEEEESSEE.......EEE-SSEEEEEEEEESSHHHHHHHHHHHHTTCB-TTEE--STTTH CS
      GARS_C   1 avgvvlaskGYPgsyekgkeitg.egvkvfhagtk.......lvtsGGRvlavvavgetleeArakayeavkkikfeglfyRkDIGa 79 
                 av+vv+a+++YPg++++g++itg ++  v+hagt+       l+++GGRvl+ +a+g+tl++Ar++aye v  i + g+++R+DI+a
  KIR64528.1 319 AVTVVVAAGNYPGTPRTGDVITGaDRPGVIHAGTArraadgaLLSAGGRVLCGTATGSTLAAARDAAYELVGGIGLVGSHHRTDIAA 405
                 79*********************955569*****99*************************************************96 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   8.6e-09   2.6e-05      12     159 ..     111     279 ..     101     281 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 8.6e-09
                  TTT.S---...........-EESS--SSSEEEEESS-------B--SS--TTE.........EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEET.. CS
  ATP-grasp_3  12 keagvkvP.......tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve..lvqefieGkplSvsllsdgekvlvlavnrqliekae 100
                   +agv++        ++ +a  l+e   ++vvK+   a+g++v+v +++ +a a  +e    +v e++ G ++S+ ++ dge +l+l   + +    +
   KIR64528.1 111 TAAGVPTAraytctdQEGTARALDEFGPPYVVKNDGLAAGKGVVVTDDRAAALAHAAECGrvVVEEYLAGPEVSLFVVTDGEAALPLLPAQDFKRV-G 207
                  44444444665333333444455555899*******************98888777665488************************9876666544.4 PP

                  .......TEEEEEEES----HHHHHHHHHHHHHT....TST....T--EEEEEEEEESS.SEEEEEEESS-- CS
  ATP-grasp_3 101 ke.....fvyaGnvtpietelkeevvelaeevve....kle....glaGyvGvDlvlkdeepyviEvNPRlt 159
                  ++         G  +p +      v e++ +vv+    +++    +  G++ v l ++  +p viE N+R+ 
   KIR64528.1 208 DGdagpnTGGMGAYAPLPWAPPGLVDEVMADVVHptlaEMRrrgtPFSGLLYVGLAMTAAGPRVIEFNARFG 279
                  445777778888889999888666666666666421114446655677888899999999999999999985 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   7.1e-08   0.00021       3      85 ..     112     190 ..     110     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 7.1e-08
                 TTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHCGTTCEEEEE----SEEEEEEEEEE CS
   ATP-grasp   3 klglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqalealkeekvivEefvpfekElsvlvvrs 85 
                 ++g+p++r ++ +++e + +a++e+g p vvK + +   GkG  v  +++ +   ++++  ++v+vEe+     E+s+ vv +
  KIR64528.1 112 AAGVPTARAYTCTDQEGTARALDEFGPPYVVK-NDGLAAGKGVVVTDDRAAALAHAAEC--GRVVVEEYLA-GPEVSLFVVTD 190
                 689*****************************.666778***99988887777666666..9******986.56888877765 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.2e-05      0.16      14      52 ..     105     143 ..      94     166 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.2e-05
  ATP-grasp_5  14 eakelleaygipvvetrlassaeeaveaaeeigypvvlK 52 
                   ak++++a g+p+++   ++++e  ++a +e+g p+v+K
   KIR64528.1 105 FAKDVMTAAGVPTARAYTCTDQEGTARALDEFGPPYVVK 143
                  5899**********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2921.76
//
Query:       KIR64529.1  [L=405]
Description: hypothetical protein TK50_02360 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-53  181.6   6.8    3.1e-53  181.2   6.8    1.1  1  Beta-lactamase  Beta-lactamase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.2   6.8   1.7e-57   3.1e-53      15     292 ..      77     363 ..      64     397 .. 0.87

  Alignments for each domain:
  == domain 1  score: 181.2 bits;  conditional E-value: 1.7e-57
                     SEEEEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTSTTCTTGGGTTEBHHHHHTTHSSCSSS CS
  Beta-lactamase  15 pGvavavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylPefagpgkgkiTlrdLltHtsGlpdl 109
                      +++v ++  +  +  ++ Gv+dl++g+pv +  +fr++S+tK+ftaa+vlql+ eG++dLd +V++ylP +  +++ ++T+r+Ll+HtsG++  
      KIR64529.1  77 TSAQVRITTPDGCWTGTS-GVRDLRTGAPVPPHARFRVGSATKMFTAALVLQLAAEGRIDLDGTVQDYLPGLLPADYPTVTVRQLLNHTSGISSP 170
                     556666666666664555.9************************************************************************999 PP

                     STSTTCTSHHHTH......HHHHHHHHHSBSSSSTTSCEE-SHHHHHHHHHHHHHHHTSHHHHHHHHHTTTTTTSTTEESSTTGGGGGGBEEEEE CS
  Beta-lactamase 110 fasdlleeaaada......aellralatlppkyapGtkwgYsntgygllgellekvtgrsleqllreeilrpLgmkdtelgppesgdprdaagyt 198
                     + +d+ e++ a +      ++++ra  + p +++pG+k+ Y n gy ++g+l+ekvtg+++eq l+++i+rpLg++dt+   +++  +  +a  +
      KIR64529.1 171 TVPDDIEWQLAHRydrwtpEQIVRAGLENPRAFDPGEKQDYTNMGYIVAGLLVEKVTGHTYEQELSRRIARPLGLRDTYGPGDDPRIRGPHAHGY 265
                     9999999999888*****************************************************************98777776665555555 PP

                     EETCEEECSCETTHHHHC.....TTTBEEEEHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECCHTEEEEEEE CS
  Beta-lactamase 199 gngpearappanlpaeae.....gagglistardlarflglalegglllsaetlaqltaklssgttrpagiraglglGwvladktgapgtfghtG 288
                     ++++   +    +  +       ++g lis+++dl  f  +al  g+++ + +l ++   +  + + +ag++a++g G+  +   +++ ++ +tG
      KIR64529.1 266 QAVTRDGVTELVDATVWSqtftpASGDLISSLADLDTFT-TALFAGRVVPEPQLTEM--FTLPPVDDVAGGPARYGAGLTAMRLADGEILWAKTG 357
                     55555444444444444489*******************.99999999999999999..899*********************999999999999 PP

                     ..STEE CS
  Beta-lactamase 289 ..ggyg 292
                        gy 
      KIR64529.1 358 srYGYL 363
                     654443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2597.48
//
Query:       KIR64530.1  [L=520]
Description: acyl-CoA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-69  232.8   0.0      7e-69  232.4   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    4.4e-19   69.2   0.1    9.8e-19   68.1   0.1    1.6  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.4   0.0   7.8e-73     7e-69       2     422 ..      43     425 ..      42     426 .. 0.86

  Alignments for each domain:
  == domain 1  score: 232.4 bits;  conditional E-value: 7.8e-73
                  HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHH.HTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEE CS
  AMP-binding   2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLr.slGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvl 98 
                  +++aa+ p+++a+vd ++g +lTY+ l +r++rlA+ Lr  lGv +gdr+++l++n + ++ a++a+  +Ga +v +n++l++++la + e+ + kvl
   KIR64530.1  43 RQAAARDPGRTAVVD-EQGAKLTYGALLDRAERLAKSLRgGLGVHSGDRIGLLCRNHHGLIEAMVATTLLGADAVLVNTGLSPAQLATVAEEQGLKVL 139
                  68899*********9.889******************************************************************************* PP

                  EETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEH.HHHHHHHHHHHHHH CS
  AMP-binding  99 iatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlsh.rnlvanvaslklet 195
                  +   d+e +e++l   a+         +d+++    eel +++ +        +  ++ p +  +i+ TSGTTG PKG+   +   +     s+   +
   KIR64530.1 140 V--HDAEFAERALGLPAD------LHRVDEAR---LEELIAAALPG-------DL-QPPPREGRTIVLTSGTTGAPKGARRPTpHGFGPL-VSI--ID 215
                  *..555554444444433......34445333...33344333222.......22.45688999***************99995555444.553..33 PP

                  CSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS CS
  AMP-binding 196 rfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllgge 293
                  r  l+ +d+vl  +pl+h  g+ ++l ++++  at+vl +++++    + l++++++++  +++vP ++++l+e ++++        + l++v l g+
   KIR64530.1 216 RIPLRVRDTVLIAAPLFHTWGY-AALQVCFALRATIVLHRRFDP---SATLGALTAHRCDAMFAVPVMVQRLMEVPPPE------PKPPLKVVALSGS 303
                  4456679**************8.***************998876...4568***********************88787......6678********* PP

                  -EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE CS
  AMP-binding 294 plspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafds 391
                  +l+  l+ +f +++g+ ++++YG TE + + + + + e ++ + ++G+p +g++++i+D+e g+pvp g +G ++v+ + +++gY      ta+    
   KIR64530.1 304 ALPGGLALRFMDTYGDVLYNLYGSTEVSWASI-AGPAELRAAPTTAGRPPHGTRLRILDDE-GRPVPAGRVGRIFVGNEMLFEGYTSG---TARESR- 395
                  ****************************9998.666777788999***************9.************************65...666554. PP

                  TCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 392 egrwlrTGDlgrldedGyleivgRkkdlikl 422
                   +++l TGDlgr+++dG l++ gR++d+i++
   KIR64530.1 396 -DGLLDTGDLGRVNADGLLFVDGRADDMIVS 425
                  .47**************************86 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.1   1.1e-22   9.8e-19       1      76 []     434     509 ..     434     509 .. 0.97

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 1.1e-22
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    evE  +++ p+V+e+aV+Gvpd+  G++l+af  l++g+++ +e+++++vr+ l+ + vp++vvfv+ lp++++GK
     KIR64530.1 434 EVEDLVARLPQVREVAVIGVPDDEYGQRLAAFLALHPGETLDPEAVREYVRHYLARFSVPRDVVFVKYLPRNATGK 509
                    8**********************************99965678********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3698.01
//
Query:       KIR64531.1  [L=404]
Description: acyl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-50  169.9   1.1    7.1e-50  169.1   1.1    1.4  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    8.5e-25   87.6   0.2    1.9e-24   86.5   0.2    1.6  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
    2.2e-22   79.1   0.0    3.6e-22   78.4   0.0    1.4  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    9.9e-16   58.4   0.1    2.3e-15   57.2   0.1    1.6  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.1   1.1   1.6e-53   7.1e-50       6     149 ..     254     398 ..     251     399 .. 0.98

  Alignments for each domain:
  == domain 1  score: 169.1 bits;  conditional E-value: 1.6e-53
                    HHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------.HHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_1   6 vametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd.raeasmaKlfaselaq 100
                    +am+t++ +R++v+a+alg+ar+a+e al+ya++r +fg+p+i++q+v++ la+m+ e++aarllv+ra ++  +++p    e sm Kl+a e+a+
     KIR64531.1 254 AAMRTFELSRPTVGAQALGVARAAYEYALDYAKDRVQFGRPIIENQAVAFALADMKMEIDAARLLVWRASWMGRNNRPFtAGEGSMSKLKAGEVAV 349
                    79*****************************************************************************999************** PP

                    HHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHHH CS
  Acyl-CoA_dh_1 101 evadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarrl 149
                     v+++a+qllGgaG+l+++pver+yrda++++i+eGtseiqr++i+r++
     KIR64531.1 350 SVTEKAVQLLGGAGFLRDHPVERWYRDAKIYTIFEGTSEIQRLVISRAI 398
                    **********************************************986 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.2   4.2e-28   1.9e-24       3     133 ..     266     387 ..     264     388 .. 0.94

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 4.2e-28
                    HHHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   3 iaavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaav 98 
                    ++a+alG+Araa++ ++++a++rv+  +g+++ +++a+ +ala++++++dAAr+l+ ra +      ++++   + +  e++++++ a e a++++
     KIR64531.1 266 VGAQALGVARAAYEYALDYAKDRVQ--FGRPIIENQAVAFALADMKMEIDAARLLVWRASWM----GRNNR---PFTAGEGSMSKLKAGEVAVSVT 352
                    799**********************..**********************************9....55555...5599****************** PP

                    HHHHHHCGGGGGBTT-HHHHHHHHHHHHCTSGGG- CS
  Acyl-CoA_dh_2  99 dalfeaaGgsalrkesplqRlwRDahaaaaHaaln 133
                    ++++++ Gg + + ++p++R +RDa++ +++++++
     KIR64531.1 353 EKAVQLLGGAGFLRDHPVERWYRDAKIYTIFEGTS 387
                    ***************************99999876 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   8.1e-26   3.6e-22       1      97 []     126     223 ..     126     223 .. 0.95

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 8.1e-26
                    EEE---SS-SS-GGG---EE.EEETT.EEEEEEEEEEEETTTT-SEEEEEEETS---.----EEEEEEE..GGGEEE-----BSS-TTS-EEEEEE CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvktta.aerdggeyvlnGeKiwitnaaiatlalvlartekpd.rarglslflvprdapgvsvrrieeklGlrglptgelvf 94 
                    af+ TEp+aGsdv +++t+a ++++ +e+vl+G+K + tn++ia +++v a   +p+ ++rg   f+vp ++ g+s +r+ +klGlr  +t+++++
     KIR64531.1 126 AFCTTEPEAGSDVGAMRTRAvYDEASDEWVLRGQKAYATNGGIAGVHVVTAS-VDPTlGSRGQAAFVVPPGTAGLSATRKLRKLGLRASHTADVFL 220
                    79**************************************************.444456******************9999*************** PP

                    E.. CS
  Acyl-CoA_dh_M  95 edv 97 
                    +dv
     KIR64531.1 221 DDV 223
                    *97 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.1   5.2e-19   2.3e-15       1     109 [.       9     115 ..       9     117 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 5.2e-19
                    THHHHHHHHHHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHH.HHHHHHHTTHHHHHH CS
  Acyl-CoA_dh_N   1 teeqealrdtvrefaeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglal.llgvhsslvapailr 95 
                    +eeq++lrd+v+ fa+e ++p aaewde++e+p+ +++++a+ Gl+g  +         + l+  i+ eel  +dag++l ++  ++sl++ ai+ 
     KIR64531.1   9 NEEQRDLRDWVHGFAAEVVRPAAAEWDEREETPWPVIQEAAKVGLYGFEFLATCWAD-PTGLSLPIASEELFWGDAGIGLgIF--GTSLAVAAIYG 101
                    69***********************************************98665433.345899**************99444..45666679*** PP

                    HS-HHHHHHHHHHH CS
  Acyl-CoA_dh_N  96 fGteeqkrryLpkl 109
                     Gt++q  +++p++
     KIR64531.1 102 AGTPDQLVEWVPQC 115
                    ***********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 2470.44
//
Query:       KIR64532.1  [L=150]
Description: acyl-CoA synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-14   52.3   0.0    8.3e-14   51.9   0.0    1.2  1  SCP2          SCP-2 sterol transfer family
    0.00017   21.9   0.0    0.00019   21.7   0.0    1.2  1  Alkyl_sulf_C  Alkyl sulfatase C-terminal
  ------ inclusion threshold ------
      0.074   12.7   0.1       0.23   11.1   0.1    1.8  2  DUF1648       Protein of unknown function (DUF1648)


Domain annotation for each model (and alignments):
>> SCP2  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   1.4e-17   8.3e-14      14     101 .]      55     146 ..      42     146 .. 0.92

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 1.4e-17
                 HHHHCCH-EEEEEEECTC.T....EEEEEETTSTEEESSCTTBS-SEEEEEEHHHHHHHHCTSS-HHHHHHTTSSEEEC-HHHHHHHHHHHH CS
        SCP2  14 kealkklagvlrfdltdlkg....sltldlkegqldvaakdegkadvtlslsledllelaegklnpqkafmqgkLkieGDielaqkleallk 101
                 ++++ ++++v+++ +t+ +     ++ +++ +g+++v + ++++++  l++ + ++l++++g +np ++fm+gkLk +GD++la ++++l++
  KIR64532.1  55 ADRAGSTNAVIHWGITGRPDggtdTYEIVVADGACTVNETPQHDPKLSLTMGPLEFLKIVSGGANPVMMFMTGKLKAKGDLGLAANIANLFD 146
                 677888999******9999999***************888889***********************************************96 PP

>> Alkyl_sulf_C  Alkyl sulfatase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   3.1e-08   0.00019      26     117 ..      55     148 ..      19     150 .] 0.89

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 3.1e-08
                   HHHHTT-EEEEEEEET...TT.TEEEEEEEETTEEEE.ECT---TTSSEEEEE-HHHHHHHHTTSS-HHHHHHTTTEEEEE-TCHHHHHHCTB--- CS
  Alkyl_sulf_C  26 gpkaadkdltinlvvt...Dv.dekyllrlsngvLthtrkaaqaddadltvtltreqLvalllgkatlgkevaagklkieGdaealakllslldef 117
                   +++a +++ +i + +t   D   ++y + + +g+ t   + +++ d++l++t+   +++++++g a++  ++ +gklk +Gd    a +++l+d +
    KIR64532.1  55 ADRAGSTNAVIHWGITgrpDGgTDTYEIVVADGACTV-NE-TPQHDPKLSLTMGPLEFLKIVSGGANPVMMFMTGKLKAKGDLGLAANIANLFDIP 148
                   578899999999999965566447*************.55.4559***********************************************9987 PP

>> DUF1648  Protein of unknown function (DUF1648)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.77   4.6e+03      33      39 ..      11      17 ..      10      20 .. 0.75
   2 ?   11.1   0.1   3.9e-05      0.23      23      41 ..      65      82 ..      62      85 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.77
     DUF1648 33 gygsKlf 39
                +yg+K f
  KIR64532.1 11 NYGPKEF 17
                69***44 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 3.9e-05
     DUF1648 23 tHfnasGepDgygsKlfal 41
                +H++++G pDg  +  +++
  KIR64532.1 65 IHWGITGRPDGGTDT-YEI 82
                9*********97776.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1112.78
//
Query:       KIR64533.1  [L=211]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-17   62.0   0.1    6.3e-17   61.1   0.1    1.5  1  TetR_N       Bacterial regulatory proteins, tetR family
    2.7e-06   27.6   0.5    4.5e-06   26.9   0.5    1.4  1  TetR_C_24    Tetracyclin repressor-like, C-terminal domain
    2.3e-05   25.1   4.5    3.4e-05   24.5   0.7    2.6  2  TetR_C_15    Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
      0.011   16.4   4.2      0.011   16.4   4.2    2.1  2  TetR_C_33    Tetracyclin repressor-like, C-terminal domain
      0.026   14.7   0.0      0.044   13.9   0.0    1.4  1  HTH_Tnp_1_2  Helix-turn-helix of insertion element transposas
       0.06   13.2   0.0       0.12   12.2   0.0    1.5  1  TrmB         Sugar-specific transcriptional regulator TrmB
       0.13   12.2   0.0       0.22   11.4   0.0    1.4  1  ACT_5        ACT domain
       0.19   11.8   0.0       0.44   10.7   0.0    1.7  1  HTH_22       HTH domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.1   2.8e-20   6.3e-17       2      47 .]      20      65 ..      19      65 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 2.8e-20
                HHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  2 ldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                ldaA+++f++rG++a++++eIA+ AG+sk+ +Y y +sKeeL+ a+
  KIR64533.1 20 LDAAVRVFSRRGFHAASMDEIAEDAGISKPMVYAYLGSKEELFVAC 65
                8******************************************985 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.5     2e-09   4.5e-06       2     110 ..      85     194 ..      84     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 2e-09
                 SSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHT.TSB.-SS-HHHHHHHHHHHHHCHHHC--TTSSS- CS
   TetR_C_24   2 gspaerLralvrahveviaeereeaavllrelraLspehreeiralrreyerllrdlieeGvaa.gef.edldpklaalailgmlnwvyrWyrpdGpls 98 
                 ++++erL + +ra+  ++  +r+ +avl+r+ r  s++ + e++a+r ++ ++++ +++ + +a g    + d +++a+a++g+  ++  W  +  + +
  KIR64533.1  85 LDADERLWRGLRAFFGFVGAHRDGWAVLYRQARG-SQPFAGELAAMRARLVEVVAGMLDHALRArGREvGATDLEVVAYALVGASESLGDWLADHPEAD 182
                 689****************************776.6667888*****************98766243359*************************9999 PP

                 HHHHHHHHHHHH CS
   TetR_C_24  99 peeiadqyadll 110
                 pe+ a ++++++
  KIR64533.1 183 PEKTATRMMNVA 194
                 999999998876 PP

>> TetR_C_15  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.3      0.26   5.7e+02      27      65 ..      50      88 ..      10      93 .. 0.61
   2 !   24.5   0.7   1.5e-08   3.4e-05      11     100 ..      96     190 ..      88     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.26
   TetR_C_15 27 lleeapslgelelvealeqriaealaalLarrrpelppe 65
                ++     ++e   v+ l+++ ++ ++a+  +++p+l+++
  KIR64533.1 50 MVYAYLGSKEELFVACLHREGTRMMEAIAGAAAPDLDAD 88
                333333444444666677777777777777777777655 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 1.5e-08
   TetR_C_15  11 dallaahrenpalrrvlleeapslgel.elvealeqriaealaal....Larrrpelppedlelaafvaveaveallhlaleedpadrealiael 100
                 +a++ +  ++ +  +vl+++a  ++ +  + +a+++r++e +a +    L++r  e+ ++dle++a+ +v a e+l ++++ +++ad e++ + +
  KIR64533.1  96 RAFFGFVGAHRDGWAVLYRQARGSQPFaGELAAMRARLVEVVAGMldhaLRARGREVGATDLEVVAYALVGASESLGDWLADHPEADPEKTATRM 190
                 6888888889999999999998888888888888888888777652222689999******************************9988876655 PP

>> TetR_C_33  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.2   2.7e+03      37      54 ..      67      84 ..      51      95 .. 0.71
   2 ?   16.4   4.2   5.1e-06     0.011       5      60 ..      95     179 ..      91     202 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.2
                CCCCHHHHHHHHHHHGGG CS
   TetR_C_33 37 aaagarvlalllaalaal 54
                +++g+r+++++++a+a+ 
  KIR64533.1 67 HREGTRMMEAIAGAAAPD 84
                566777777777777633 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 5.1e-06
                 HHHHHHHHHH-HHHHHHCCSS--TT-S-H..GHHCCCCHHHHHHHHHHHGGG---TH.............................- CS
   TetR_C_33   5 arayrrfAlahpaeYallfgspvpgyaap..delaaagarvlalllaalaalvaagl.............................p 60 
                  ra+  f+ ah+  +a+l+  +++  ++p   elaa  ar++++++++l+ +++a+                              p
  KIR64533.1  95 LRAFFGFVGAHRDGWAVLY-RQAR-GSQPfaGELAAMRARLVEVVAGMLDHALRARGrevgatdlevvayalvgaseslgdwladhP 179
                 69*****************.3333.3445435*****************96655544366666666666666666655555555553 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     2e-05     0.044      15      64 ..      23      74 ..       7      81 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2e-05
                 HHHHHHHHHH--S-HHHHHHHHTS-HHHHHHHH..H-HHHHHHHHHHHHHHH CS
  HTH_Tnp_1_2 15 aaellvendyekltldeiaeevgvsrsTlykWk..kkkeFieyvnelaeefl 64
                 a+ +   + ++  ++deiae+ g+s+   y ++  k++ F++ + +   +++
   KIR64533.1 23 AVRVFSRRGFHAASMDEIAEDAGISKPMVYAYLgsKEELFVACLHREGTRMM 74
                 4556678899**********************98555568887776666555 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.6e-05      0.12      23      45 ..      35      57 ..      32      61 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.6e-05
                CHHCHHCCCTTSSCHCHHHHHHH CS
        TrmB 23 atadeiaeelgvprskvYevLrs 45
                a++deiae++g++++ vY +L s
  KIR64533.1 35 ASMDEIAEDAGISKPMVYAYLGS 57
                789***************99965 PP

>> ACT_5  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0001      0.22       9      24 ..      23      38 ..      15      47 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
       ACT_5  9 vlrvvrrrgFevksln 24
                  rv++rrgF+ +s++
  KIR64533.1 23 AVRVFSRRGFHAASMD 38
                579************7 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00019      0.44      43      62 ..      36      55 ..      22      56 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00019
      HTH_22 43 avekvAekLgiSraTvYryL 62
                +++++Ae  giS++ vY yL
  KIR64533.1 36 SMDEIAEDAGISKPMVYAYL 55
                899****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1515.73
//
Query:       KIR64534.1  [L=206]
Description: DedA family membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-16   60.1   2.4    2.7e-16   60.1   2.4    1.6  1  SNARE_assoc  SNARE associated Golgi protein
  ------ inclusion threshold ------
      0.056   12.6   0.3      0.056   12.6   0.3    2.0  2  FTR1         Iron permease FTR1 family


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   2.4     3e-20   2.7e-16       1     119 [.      34     159 ..      34     160 .. 0.89

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 3e-20
  SNARE_assoc   1 lPsevllvaaGvlf.....glllgtlvtslgallGaslayllgrylgrkalrrkllsekrvka....lerlverygflallllrllpivPrdlvnyva 89 
                  +P+e+++v+aGv++     +l +++l+++ gal+G+ l+y++gr  g ++l r l    r +a    + r v+r+g ++l ++r++p+  r++v++++
   KIR64534.1  34 VPGETIVVTAGVFAvggqpDLTMVILLAACGALAGDHLSYAIGRGGGAHRLAR-LPADSRRRAgsewARRAVDRRGGMMLTTARYVPGG-RTAVTLTM 129
                  79************999999999************************755555.444444444468899999****************8.******** PP

  SNARE_assoc  90 GltrvsfkrFflatfiGsipwalvyaylGs 119
                  G+ r++++ F+l+ ++++  wa    +lG+
   KIR64534.1 130 GAVRYPLRSFVLFDALAAGTWAAYCGLLGY 159
                  *********************999998887 PP

>> FTR1  Iron permease FTR1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   6.2e-06     0.056     149     196 ..      37      85 ..      36      87 .. 0.93
   2 ?   -0.0   0.4     0.044     4e+02     184     227 ..     150     192 ..     139     198 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.2e-06
        FTR1 149 EavLfvaaivaytvk.rvsalilgvvlGaliavvlglliyrglvklslq 196
                 E++++ a+++a   + +++ +il + +Gal++  l+++i+rg+ +  l+
  KIR64534.1  37 ETIVVTAGVFAVGGQpDLTMVILLAACGALAGDHLSYAIGRGGGAHRLA 85 
                 9**********99999**************************9987765 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.044
        FTR1 184 lliyrglvklslqsffilegflLllvaagLfsvgtlellekaea 227
                 +++y+gl+  ++  +f  e  +L+++a+  +sv+   lle+a++
  KIR64534.1 150 WAAYCGLLGYFGGLVFERE-PILGILAGIGLSVAITGLLEAARW 192
                 6667777777776666443.467777777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1556.72
//
Query:       KIR64535.1  [L=437]
Description: adenylosuccinate synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-72  242.8   0.0    2.3e-71  241.0   0.0    1.7  2  Adenylsucc_synt  Adenylosuccinate synthetase


Domain annotation for each model (and alignments):
>> Adenylsucc_synt  Adenylosuccinate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.0   0.0   1.3e-75   2.3e-71       2     335 ..       5     335 ..       4     341 .. 0.89
   2 ?   -1.0   0.0     0.036   6.5e+02     396     415 ..     403     422 ..     396     424 .. 0.86

  Alignments for each domain:
  == domain 1  score: 241.0 bits;  conditional E-value: 1.3e-75
                      EEEE-SSS-S-HHHHHHHHHTT..-SEEEE-SB-TTSSEEEE.ETTEEEEESSS-GGGGSTT-EEEE-TTBEE-HHHHHHHHTTSS-TT..... CS
  Adenylsucc_synt   2 vvvGaqwGDEGKGkivDllaee..advvvRfqGGanAGHtvv.vdgkkyklhllpSGilnpgvvnviGngvvvdpealleEieeleakgvelsk 92 
                      +vv++ +GD GKG +vD+l++   ++ v+Rf+GGa+A+H+vv  dg+++++ ++++G+++pgv+++++++vvvdp al++E+++l+a gv  + 
       KIR64535.1   5 LVVDLGYGDAGKGTVVDWLCATrpVHTVIRFNGGAQAAHNVVlRDGRHHTFAQFGAGTFRPGVRTHLSRHVVVDPLALAAEADHLAAVGVPDAL 98 
                      79*****************65334******************99**********************************************9999 PP

                      .TEEEETTSEE--HHHHHHHHHHHHH----------TTHHHHHHHHHTT--..-BGGGGGSHHHHHHHHHHHHHHTHHHHHHT...T-----HH CS
  Adenylsucc_synt  93 erllisdrahlvlpyhkalDkleeaakgkkkiGtTkkGiGpayadkvarrg..irvgdlldeeeleeklekllelknkllekldkeeleveell 184
                      +rl+++ +a l +pyh+a+++++e a+g++++G+++ G+G+a+a+ +a+ g   rv+d+ ++++l+++l++l ++ ++ l  ld+ +++  ++l
       KIR64535.1  99 DRLTVDGEALLATPYHRAANRARELARGADRHGSCGLGVGEAVAYGLAHPGsaPRVADCRTPAVLRRRLAALRDRLTAELGPLDAPPVD--DCL 190
                      *************************************************95449*****************999999888888866665..888 PP

                      HHHHHHHHHHGGGEE-HHHHHHHHHHTT--EEEE--S-GGG-TTTSSTTSS-SS--SHHH...HHHHTT--GGGEEEEEEEEESSEEESSSS-- CS
  Adenylsucc_synt 185 eellkyaerlkpyvvdtvallnealkegkkvLfEGaqgtllDidhGtYPfvTsSnttagg...altglglapkkidevlgvvKAyttrvGeGpf 275
                        ++++ +r++  +vd  + l+  l++g+  +fEGaqg+llD +hG++P++T+S+tt ++    l+ +gla     e lgv++  ttr+G Gp+
       KIR64535.1 191 PAFTAFGDRVA--IVD-RSHLAGVLRAGT-CVFEGAQGVLLDEWHGFHPYTTWSTTTFANaegLLAEAGLA--GTAERLGVLRVTTTRHGPGPL 278
                      89999*****9..888.677888998977.***************************99833344555555..4569***************** PP

                      TTB--SHHHHHHHHHTT-B-TTT--B-...EEE-EEHHHHHHHHHH.HT-SEEEEE-GGGGTT- CS
  Adenylsucc_synt 276 ptelkdevgeklrekGkEfgtttgrpR...rcGwlDlvllryavrv.ngvtelaltklDvldgl 335
                       te   + +  l     + ++ t  ++   r G++D+v++rya  +  gv++lalt+lD  d+l
       KIR64535.1 279 VTE---DPALPLA----DAHNATNPWQgrfRFGHFDAVAHRYALDAaGGVDGLALTHLDLADRL 335
                      ***...5666784....44445544444458*************98799**********99875 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.036
                      HHHHHHHTS-EEEEE-SSST CS
  Adenylsucc_synt 396 efieellgvpvkiisvGper 415
                      +++ee+lg+pv+++s++p  
       KIR64535.1 403 AAVEEALGAPVTLTSHSPTA 422
                      689*************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      158  (0.00881254); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 3193.13
//
Query:       KIR64536.1  [L=320]
Description: hypothetical protein TK50_02400 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.093   11.8   0.0       0.14   11.2   0.0    1.2  1  DUF444    Protein of unknown function (DUF444)


Domain annotation for each model (and alignments):
>> DUF444  Protein of unknown function (DUF444)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.9e-06      0.14     223     282 ..      37      95 ..      12     102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.9e-06
      DUF444 223 ipfidelDlRYrrvekepkpesnaVmfclmDvSGSMdetkkdlakrfFilLylFLkrkYe 282
                  p +d+ D   +++++ ++p+s a+   l Dv GSM++  + l  +   lL l L++ Y 
  KIR64536.1  37 HPALDPRDAMRESRDSAEHPQSTAIT-VLFDVTGSMRNVPRTLQAKLPQLLGLLLRQGYA 95 
                 57777888877888899999999876.589***********************9999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2364.18
//
Query:       KIR64537.1  [L=328]
Description: serine/threonine protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0073   15.7   0.0     0.0088   15.4   0.0    1.1  1  Pkinase      Protein kinase domain
  ------ inclusion threshold ------
      0.084   12.2   0.0       0.12   11.6   0.0    1.3  1  Kinase-like  Kinase-like
       0.15   11.4   0.0       0.23   10.8   0.0    1.3  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.5e-06    0.0088      95     180 ..     178     263 ..     113     285 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.5e-06
                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHH CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge.lKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDv 180
                 l+ ++a  +++++l +l   H++gi+H  + p  +Li+ +g+ + ++D+ +++    +     + g +++ +PEv  ++  ++ +D+
  KIR64537.1 178 LDGRDAAWMWRRLLVALGLAHRAGIVHGAVLPRHVLIEPDGHgVVLVDWCFSAATGGTI-PALVPGHEDWYPPEVAARRACGPGTDL 263
                 66678888999***************************99999***********99988.89999**********999999998886 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     2e-05      0.12     161     237 ..     198     275 ..     189     303 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2e-05
  Kinase-like 161 qakglvhgkftvdnllldekg.glmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlG 237
                  +  g+vhg + ++++l +++g g++l +       g   + + v+  + + PpE+ ++r+  ++   + m+    aW +G
   KIR64537.1 198 HRAGIVHGAVLPRHVLIEPDGhGVVLVDWCFSAATGGTIP-ALVPghEDWYPPEVAARRAC-GPGTDLAMAATCMAWLMG 275
                  457*****************97899999988888888888.55555599*********998.888999999999999887 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.8e-05      0.23     100     163 ..     162     223 ..     103     227 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.8e-05
         Kdo 100 egaqdLedllakwae.laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwl 163
                  g  +L+++ + + + l+++  + +++++  +    hrag+ H+ + ++++l++ ++     ++l
  KIR64537.1 162 PGLHSLDEVRRAYPDgLDGRDAAWMWRRLLVALGLAHRAGIVHGAVLPRHVLIEPDG---HGVVL 223
                 577899999999888999999999*****************************9987...44555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2306.62
//
Query:       KIR64538.1  [L=250]
Description: DNA hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-19   68.5   0.0    9.1e-19   67.8   0.0    1.3  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   5.1e-23   9.1e-19       6     128 ..      22     149 ..      18     151 .. 0.77

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 5.1e-23
                 EEEE.EEETTSE..EEEEEESSSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEE..EEEEEEEEEEEECSGCSS CS
       NUDIX   6 vgvv.llnekge..vLlvrrskkpfpg.WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygd..eheilyvfleevegelep 98 
                 v vv l+ + ++  +Llvrr + pf g W+lPgG+v+p E++++ ArREl+EEtGl  e l+ +  l+ la+y +p++d   + +++ +l+ + + + p
  KIR64538.1  22 VDVVaLTVRSDAlhLLLVRRGGPPFEGhWALPGGFVRPEEDLATGARRELAEETGLGGERLRRVH-LEQLASYGDPDRDprMRIVSVAYLAFAPDLPDP 119
                 45554444444455******************************************778887776.777888888888855556666666555555556 PP

                 TSTTTEEEEEEEEHHHHHHHHTHCTHHHHH CS
       NUDIX  99 ndenevsevrwvpleellkeklaaesrkll 128
                  +  + +++ w+p+++l   +la ++ +++
  KIR64538.1 120 AAGSDADDAIWLPVTALSSRQLAFDHDRII 149
                 6677778888*******7777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1727.89
//
Query:       KIR64539.1  [L=451]
Description: 3-ketoacyl-ACP reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-52  176.4   6.9    5.8e-49  166.8   1.8    3.0  3  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    8.3e-45  152.6   0.8      2e-44  151.4   0.1    1.8  2  adh_short        short chain dehydrogenase
    1.7e-17   63.9   0.5      3e-17   63.1   0.5    1.4  1  KR               KR domain
      1e-05   25.2   0.2    1.5e-05   24.6   0.2    1.3  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.022   13.8   0.2      0.035   13.2   0.2    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
       0.13   12.2   0.1       0.38   10.7   0.1    1.8  1  ChW              Clostridial hydrophobic W
       0.54   10.1   2.6       0.68    9.8   1.0    1.9  2  Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal do
        1.6    9.8   4.4    1.4e+02    3.5   0.6    3.7  3  LytR_C           LytR cell envelope-related transcriptional a


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.033        74     143     169 ..     133     158 ..     106     162 .. 0.86
   2 !    9.1   0.2    0.0004       0.9     192     232 ..     157     197 ..     150     199 .. 0.85
   3 !  166.8   1.8   2.6e-52   5.8e-49       1     230 [.     218     444 ..     218     445 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.033
                   HHHHHHHHHHHHHHHHHGGGTEEEEEE CS
  adh_short_C2 143 aaKaalealtrylAvelgpkgiRvNav 169
                   +a  ale+ltr++ +e+g+ g++   v
    KIR64539.1 133 TAQRALEGLTRSIGKEFGR-GVTAQLV 158
                   6788**************9.8877666 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0004
                   HHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 192 learaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                   l + +  g +gt++   ++  fL+s +++y++Gq++ v +G
    KIR64539.1 157 LVHVTAHGDAGTATGLEATLRFLLSGRSAYVSGQVVRVGAG 197
                   55566778899999999********************9988 PP

  == domain 3  score: 166.8 bits;  conditional E-value: 2.6e-52
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   Gaa+gIG+a+A+ l + Ga+vv+ d+  ++ ++++++a+e+g +++++D t +++ ++l++++++++g++D++v+nagi+++    +  ++ + +d 
    KIR64539.1 218 GAARGIGAALARVLSRDGAQVVALDIPAAG-DELAAVANEIGGTAVQLDLTAPDAPTRLADHLASRHGRVDVVVHNAGITRD--RTLGRMDADRWDS 311
                   9****************************9.89*************************************************..999********** PP

                   HHHHHTHHHHHHHHHHHH..HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHH CS
  adh_short_C2  98 aldvnlyslfllakaalp..lmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleel 192
                   ++dvnl s  ++   +l+  l+ +gg+iv +ss+++  +  +++ y+++Ka++++l+++lA  l ++gi vNav+pg+i+T+++++i+    ++e+ 
    KIR64539.1 312 VIDVNLSSQERINDVLLErgLIPAGGRIVSVSSIAGIAGNRGQTNYATSKAGVIGLVQSLAPALRERGISVNAVAPGFIETRLTARIP--LVVREAG 406
                   *****************99********************************************************************9..6789999 PP

                   HHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEES CS
  adh_short_C2 193 earaplgrlgtpeevaeaalfLasdeasyitGqtlvvD 230
                   +++  + + g p +vae++ +La +++ +++G+++ v 
    KIR64539.1 407 RRMNSMAQGGLPVDVAETIGWLAWPASGAVSGNVVRVC 444
                   9999999*9*************************9886 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.58   1.3e+03     152     177 ..     134     158 ..     132     176 .. 0.72
   2 !  151.4   0.1   8.8e-48     2e-44       1     189 [.     212     397 ..     212     400 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.58
                 HHHHHHHHHHHHHHHHGGGTEEEEEE CS
   adh_short 152 sKaavagltrslakelaptgirvnav 177
                 +  a++gltrs+ ke+ + g++ + v
  KIR64539.1 134 AQRALEGLTRSIGKEFGR-GVTAQLV 158
                 557899999999999887.4555444 PP

  == domain 2  score: 151.4 bits;  conditional E-value: 8.8e-48
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEES..CHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdr..seekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsels 97 
                 +vvlvtGa++GIG a+a+ l ++Ga+vv++d+    ++l++va+e++      +a+q+D+t  ++  +l ++ ++++g++dv+v+NAGit++++  +++
  KIR64539.1 212 QVVLVTGAARGIGAALARVLSRDGAQVVALDIpaAGDELAAVANEIGG-----TAVQLDLTAPDAPTRLADHLASRHGRVDVVVHNAGITRDRTLGRMD 305
                 69***************************7762156788888899886.....79******************************************** PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  98 eeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 +++w++vi+vNl +   +   +l+  l   +GrIv vsS+ag  ++ g++ Y++sKa+v+gl++sla  l+++gi+vnavaPG+++T ++++
  KIR64539.1 306 ADRWDSVIDVNLSSQERINDVLLERGLIPAGGRIVSVSSIAGIAGNRGQTNYATSKAGVIGLVQSLAPALRERGISVNAVAPGFIETRLTAR 397
                 ***********************99778***********************************************************99876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.5   1.4e-20     3e-17       2     161 ..     213     369 ..     212     391 .. 0.82

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 1.4e-20
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 ++l+tG++ g+G +lar l ++ga+ ++l    a   ++ +a  +     ++  ++v++D++ +da ++l +++ ++++++  v+h Ag++rd++l +m
  KIR64539.1 213 VVLVTGAARGIGAALARVLSRDGAQVVALDIPAA--GDELAAVAN-----EIGGTAVQLDLTAPDAPTRLADHLASRHGRVDVVVHNAGITRDRTLGRM 304
                 579**********************999987772..233232333.....334478899**************************************** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalae 161
                 +a+++++v+   ++  + ++ +l +         +v +SSiag+ g++gq+nYa+  a + +l++
  KIR64539.1 305 DADRWDSVIDVNLSSQERINDVLLErgliPAGGRIVSVSSIAGIAGNRGQTNYATSKAGVIGLVQ 369
                 **********************999555444579********************98775544444 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   6.8e-09   1.5e-05       1     120 [.     214     350 ..     214     372 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 6.8e-09
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC...EEEE--TT-HH....HHHHHHHHH.T-SEEEE--S---HHH....HHHSHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl...elveldltdrs....alerlfkee.qpdavihlAavggvaa....ssedpadf 87 
                 +lVtGa+  iG+al++ l + g +v++ld    +++ a+ ++    + v+ldlt ++      + l +++ ++d+v+h A++   ++     +++   +
  KIR64539.1 214 VLVTGAARGIGAALARVLSRDGAQVVALDIPAAGDELAAVANEiggTAVQLDLTAPDaptrLADHLASRHgRVDVVVHNAGITRDRTlgrmDADRWDSV 312
                 79*****************************8888887777769*************555333344556689*******99654433111145555668 PP

                 HHHHTHHHHHHHHHHHHHTCT....EEEEEEE.GGGGT CS
   Epimerase  88 ieknlqgtlnlleaarkagvk....rllflsS.sevYG 120
                 i+ nl  + ++ +++ ++g+     r++ +sS + + G
  KIR64539.1 313 IDVNLSSQERINDVLLERGLIpaggRIVSVSSiAGIAG 350
                 88999999999999999977777778888888555555 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   1.5e-05     0.035       3      62 ..     214     296 ..     212     315 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.5e-05
                    EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT..................T--TTSHHHHHHHH.....HHH--SEEEE----- CS
  RmlD_sub_bind   3 ilvtGanGqlGseLakqlaeeglevlaltre..................eldltdaeavaell.....keakpdvvvnaAAyt 62 
                    +lvtGa   +G +La+ l+++g++v+al+ +                  +ldlt ++a ++l      ++ + dvvv+ A  t
     KIR64539.1 214 VLVTGAARGIGAALARVLSRDGAQVVALDIPaagdelaavaneiggtavQLDLTAPDAPTRLAdhlasRHGRVDVVVHNAGIT 296
                    79**************************99999*********************99998888855566667889999999766 PP

>> ChW  Clostridial hydrophobic W
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00017      0.38       3      19 ..     423     439 ..     422     442 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
         ChW   3 QniGWqnwvkdGeiaGT 19 
                 ++iGW+ w ++G+++G 
  KIR64539.1 423 ETIGWLAWPASGAVSGN 439
                 68**************6 PP

>> Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.0    0.0003      0.68      52     109 ..     188     254 ..     139     263 .. 0.78
   2 ?   -1.7   0.0       1.1   2.4e+03      22      42 ..     336     356 ..     334     363 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0003
  Peptidase_M17_N  52 akrvllVGLGkeee.............ltaealrkaagaaaralkgakvttiavalplegknsdekaeaaa 109
                      +  v+ VG G++e              l + a r +++a ar l++ +++ +a+++p +g    + ++a+a
       KIR64539.1 188 SGQVVRVGAGAAEPpadwdrpldgqvvLVTGAARGIGAALARVLSRDGAQVVALDIPAAG----DELAAVA 254
                      788999******99*******************************************333....3343333 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.1
  Peptidase_M17_N  22 agllsellkegdftGkagevl 42 
                      +g++ ++++  ++ G++g++ 
       KIR64539.1 336 GGRIVSVSSIAGIAGNRGQTN 356
                      68999999***********95 PP

>> LytR_C  LytR cell envelope-related transcriptional attenuator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.15   3.3e+02      13      50 ..      51      87 ..      46     121 .. 0.65
   2 ?    3.5   0.6     0.064   1.4e+02      13      80 ..     221     289 ..     212     293 .. 0.51
   3 ?    2.7   0.0      0.11   2.5e+02      10      33 ..     362     385 ..     360     429 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.15
      LytR_C 13 sGlAarvadaLeerGftvgevgnagnadeettivyrea 50
                  lA+ v + L+++G +  ++++a+++++    vy +a
  KIR64539.1 51 GRLAGPVGKILTAAGVELRDPATADAQERFGALVY-DA 87
                568999*********99999777777755677777.21 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.064
      LytR_C  13 sGlAarvadaLeerGftvgevg.n.agnadee..........ttivy.reaaaaaakalaaalglgelqedsvkdas.....vtvv 80 
                 +G+ a++a+ L++ G +v++ +   ag+   e          t +    +a+ +a  +la++l             +     v+vv
  KIR64539.1 221 RGIGAALARVLSRDGAQVVALDiPaAGD---ElaavaneiggTAVQLdLTAP-DAPTRLADHL-------------AsrhgrVDVV 289
                 6788888888888888888755321222...222344444443333322222.2444555554.............0333345555 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.11
      LytR_C  10 tgvsGlAarvadaLeerGftvgev 33 
                 +gv Gl +++a aL+erG  v +v
  KIR64539.1 362 AGVIGLVQSLAPALRERGISVNAV 385
                 5788**************977663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3347.30
//
Query:       KIR64540.1  [L=430]
Description: acetyl-CoA acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-46  158.5   0.0    4.3e-46  157.4   0.0    1.6  1  Thiolase_N     Thiolase, N-terminal domain
    1.8e-31  108.4   0.0    3.2e-31  107.5   0.0    1.4  1  Thiolase_C     Thiolase, C-terminal domain
     0.0017   17.9   0.0     0.0035   16.9   0.0    1.5  1  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.4   0.0   7.3e-50   4.3e-46       1     260 []       7     280 ..       7     280 .. 0.89

  Alignments for each domain:
  == domain 1  score: 157.4 bits;  conditional E-value: 7.3e-50
                 EEEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsi 99 
                 v++++++r+p+ +++  ++++s  ++l +al +l+++ g++ + v ev+ G vl+   + n++r+++l + +  ++pa  ++++c+ gl+a +l+a++i
  KIR64540.1   7 VAVIGGNRIPFARSNSRYASASNADMLGAALDGLVARFGLAGQRVGEVVAGAVLKHSRDFNLTREVVLGSKLDPHTPAYDIQQACGTGLEAAILVANKI 105
                 79************************************************************************************************* PP

                 HTTSHSEEEEEEEEESTTS-EEETCTTT...................TGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHH CS
  Thiolase_N 100 aageadvvvagGvEsmsnaptaestdvr...................sglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvk 179
                 a g++++ +agGv + s+ap a++ ++r                   +    + +  +  + +   a+  ++  mG +a ++a +++i+R++qde A++
  KIR64540.1 106 ALGQIEAGIAGGVDTTSDAPLAVNEELRrtllrlnsartlgerlkiaA-KLRPLQPFQPEIPR--NAEPRTGLSMGEHAARTALRWNIDRQAQDELALR 201
                 ***************************9*******9999885555422.22222222222222..478899**************************** PP

                 HHHHHHHHHHTTTTTTTBE-EEEEESSSEEEE-S-TTS-TT--HHHHHTS-BSSSTTS......S-BTTSB--BEEEEEEEEEEEHH CS
  Thiolase_N 180 shqkaaaaqkagkFkdeivPvkvkgkkgkktvdkdeairsevtaekLaklkpaFkkeG......tvtAgnasqisDGaaavllmses 260
                 shq+ aaa + g F+d   P           +++d+ +r+++t ekL +l+p+F ++G      t+tAgn+s+++DGa++vll+se+
  KIR64540.1 202 SHQRLAAAYERGFFDDLLTPYL--------GLTRDQNLRPDTTGEKLGSLRPVFGHRGpdaeqaTMTAGNSSPLTDGASTVLLASEQ 280
                 ************9999775554........36789*******************8766666666********************985 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.0   5.3e-35   3.2e-31      17     123 .]     307     430 .]     289     430 .] 0.95

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 5.3e-35
                 GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--G.................GGBSTT--HHHH-B-TTTHHHHHHHHHHHHHH CS
  Thiolase_C  17 peilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldl.................ekvNvnGGaialGHPlGasGaRivvtllselk 98 
                 +e l ++Paya++++l +aglt++d d++Ei+EAFa+q+La++ a ++ +                 +++NvnG ++a GHP+ a+G Riv+tl++ l 
  KIR64540.1 307 DEGLLMAPAYAVPRMLARAGLTLQDFDYYEIHEAFASQVLATLAAWESPEfckdrlgldaplgsidrDRLNVNGSSLAAGHPFAATGGRIVATLAKLLA 405
                 57799*******************************************99************************************************* PP

                 HCTTSEEEEEEEETTTEEEEEEEEE CS
  Thiolase_C  99 keggklgvaalCigggqgvalviek 123
                 ++g+  g++++C++ggqgv++++e+
  KIR64540.1 406 ESGSGRGLISICAAGGQGVTAILER 430
                 *********************9985 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.9e-07    0.0035     161     205 ..      77     121 ..      73     135 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.9e-07
                    HHT--SSEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE-- CS
  ketoacyl-synt 161 alglrGpsvtvdtACsSslvavhaavqslrsgeadvalaGGvell 205
                    +l+ + p++ ++ AC ++l a  ++ +++  g++++ +aGGv+++
     KIR64540.1  77 KLDPHTPAYDIQQACGTGLEAAILVANKIALGQIEAGIAGGVDTT 121
                    5677889999********66666666****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3454.96
//
Query:       KIR64541.1  [L=366]
Description: glucosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-34  118.9   0.0    2.5e-34  118.5   0.0    1.2  1  Glycos_transf_2  Glycosyl transferase family 2
    4.6e-12   46.3   0.5    6.9e-12   45.7   0.5    1.3  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
     0.0015   19.0   0.0     0.0096   16.4   0.1    2.0  2  Glyco_tranf_2_4  Glycosyl transferase family 2
     0.0078   15.7   0.0      0.013   14.9   0.0    1.3  1  Glyco_transf_21  Glycosyl transferase family 21


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   0.0   5.6e-38   2.5e-34       1     167 [.      13     175 ..      13     178 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.5 bits;  conditional E-value: 5.6e-38
                      EEEEEESS-TTTHHHHHHHHHHH..GGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE CS
  Glycos_transf_2   1 svviptyNeektlletlesllaq..dpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdep 92 
                      svv+p+yNe++ ++ ++e+l+     +   +e++ vDDgS+D t+ +l ++a++ p++r++r+ +n G+++al agl +a+g++++ +DaD++ 
       KIR64541.1  13 SVVVPMYNEQDVVAVFVERLRPVldGTGTTYEVVAVDDGSRDATARLLLDHARSWPQLRLVRLRRNSGHQAALTAGLHRARGRWVVSIDADLQD 106
                      8*******************999999******************************************************************** PP

                      -TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHH CS
  Glycos_transf_2  93 dpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrreale 167
                      +p+ ++++++ + + g+dvv+g r  ++ +t +++ +        ly++  +r  + +l+   g ++l++r+++e
       KIR64541.1 107 PPEVIPEMLATARDRGVDVVYGVRADRSTDTPFKRGT------AGLYYRLMRRIVGADLPAQAGDFRLVSRDVVE 175
                      ***********************************98......57***************************996 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.5   1.5e-15   6.9e-12       1     176 [.      10     178 ..       9     216 .. 0.77

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 1.5e-15
  Glyco_tranf_2_3   1 prdlavlVptfneed...vlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlv 91 
                      p dl+v+Vp +ne+d   v +e l+ +l  +  ++evv v+d+s+++t++ +   a+  p+  +r+v+  rn    g   al  +l+++++++v
       KIR64541.1  10 P-DLSVVVPMYNEQDvvaVFVERLRPVLDGTGTTYEVVAVDDGSRDATARLLLDHARSWPQ--LRLVRLRRNS---GHQAALTAGLHRARGRWV 97 
                      4.5************6666666777777777789****************98888999988..5777777764...5667789*********** PP

  Glyco_tranf_2_3  92 llvDdDtvvePdtlkrllqffltpkvgavgtpvfllnrstlvsalgalefaerhlrflaarralgv.ltln.Gsgslirrevlkele 176
                      + +D+D    P++++ +l+++++++v++v++ +  +  +t + + +a       l+ +++rr +g+ l+   G + l+ r+v++ l+
       KIR64541.1  98 VSIDADLQDPPEVIPEMLATARDRGVDVVYGVRADRSTDTPFKRGTA------GLYYRLMRRIVGAdLPAQaGDFRLVSRDVVEVLR 178
                      ******************************98876666666663333......5556666777765433334777777777777666 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   2.1e-06    0.0096      21      81 ..      44     103 ..      19     103 .. 0.74
   2 ?   -0.4   0.0      0.38   1.7e+03       3      31 ..     107     136 ..     105     142 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.1e-06
  Glyco_tranf_2_4  21 rilvydndstDgtrail....kelpevkllhvdksyederrqvellkallaryaeadwvlvvDaD 81 
                      +++ +d++s+D t+++l    +++p+++l++ + +      + ++l+a l+r a+++wv+ +DaD
       KIR64541.1  44 EVVAVDDGSRDATARLLldhaRSWPQLRLVRLRRNSG----HQAALTAGLHR-ARGRWVVSIDAD 103
                      58899************55544488888888888765....46788888888.59*********9 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.38
  Glyco_tranf_2_4   3 eadiLpeflahhlalgfdril.vydndstD 31 
                      + +++pe+la +++ g+d ++ v  + stD
       KIR64541.1 107 PPEVIPEMLATARDRGVDVVYgVRADRSTD 136
                      5679*************9766355566666 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     3e-06     0.013      21      93 ..      84     156 ..      72     177 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3e-06
  Glyco_transf_21  21 nllqaleaakydllvisDsdvrvkpdyLeellaaledpkvglVtslpvgsdakglaaaleaaflntlagvlqa 93 
                      +l  +l +a+ +++v  D+d   +p+ + e+la+ +d +v +V ++ +   +++  ++  a + + l++++  
       KIR64541.1  84 ALTAGLHRARGRWVVSIDADLQDPPEVIPEMLATARDRGVDVVYGVRADRSTDTPFKRGTAGLYYRLMRRIVG 156
                      57789999***********************************999998888887777777666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2426.62
//
Query:       KIR64542.1  [L=781]
Description: hypothetical protein TK50_02435 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 4959.93
//
Query:       KIR64543.1  [L=83]
Description: hypothetical protein TK50_02445 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       183  (0.0102069); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.45
# Mc/sec: 555.01
//
Query:       KIR64544.1  [L=474]
Description: adenylosuccinate lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-23   81.2   0.1    1.9e-22   80.1   0.0    1.6  2  Lyase_1    Lyase
    8.8e-13   48.6   0.7    8.8e-13   48.6   0.7    2.6  2  ADSL_C     Adenylosuccinate lyase C-terminus
  ------ inclusion threshold ------
       0.16   12.0   0.4       0.92    9.6   0.1    2.4  2  ETF_alpha  Electron transfer flavoprotein FAD-binding domain


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   3.2e-26   1.9e-22      50     312 .]      49     302 ..      18     302 .. 0.84
   2 ?   -2.3   0.0      0.39   2.3e+03     171     244 ..     350     422 ..     345     425 .. 0.63

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 3.2e-26
                 HHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTTHSSGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH CS
     Lyase_1  50 aaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellgekvepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekake 148
                  + +++a + vl++++l     ++  ++ + ++v+++++e+ +      ++  ++vh+g +s D  +   +l+++++l e + + +      l + a+e
  KIR64544.1  49 PDGVVEAYERVLDDVDLA---SIAERERVTRHDVKARIEEFSA------LAGHEHVHKGMTSRDLTENVEQLQVRASL-ELVRDRVVATLARLARLANE 137
                 566788899999977666...99*******************9......7889*************************.8899999999999******* PP

                 TTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEETTT....TTTTSSTT..TSCC..THHHHHHHHHHHHHCSTEESSSHHHHH CS
     Lyase_1 149 fkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvellgg....gtavgtgl..nadp..efaelvakelakvtglpvkapnsfeav 239
                 +   v+ Gr h   A+++tlg+ ++++ae+l   +erl++l + + +  ++g    ++     +  +ad+  e +++va++l+ ++       +s+ +v
  KIR64544.1 138 HSGLVMTGRSHNVAAQATTLGKRFASAAEELLIAYERLEDLINWYPLRGIKGpvgtAADQLDLFdgDADRvaELERRVAEHLG-FAR----VLDSVGQV 231
                 *****************************************997777777762200333333332234445577888999999.555....689999** PP

                 HC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTSTTTEBTHHHHHHHHHHHHHHH CS
     Lyase_1 240 sdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiMPgKvNPvqlElltgvagrvvG 312
                  +r   + +l+al+ +a+  s +a  +rl+      l ++ +  ++ GSS MP+K N  ++E ++g a+ + G
  KIR64544.1 232 YPRSIDLAVLAALAQVAAAPSSLATTIRLMVG--QELATEGFKPGQVGSSAMPHKMNTRSSERVNGFAVIIRG 302
                 ********************************..5577888999999*******************9988776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.39
                 HHHHHHHHHHHHHHHHHHHH..HHHTCEETTTTTTTSSTTTSCCTHHHHHHHHHHHHHCSTEESSSHHHHHHC-HH CS
     Lyase_1 171 elsayaealerdrerlkell..krllvellgggtavgtglnadpefaelvakelakvtglpvkapnsfeavsdrDa 244
                 e+ ay + ++r++er+   l  +++lv  +  g++  ++++a +e a  va  +     ++ ++++ f+ +++ D+
  KIR64544.1 350 EFGAYPAVVNRELERFLPFLatTKILVAAVRRGVGREAAHEAIKEHAVGVALAMR---EQGATENDLFDRLAADDR 422
                 6778888888999988764411466666666677777777777774444443333...434677777777777766 PP

>> ADSL_C  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.4       0.2   1.2e+03      15      41 ..      73     109 ..      62     136 .. 0.72
   2 !   48.6   0.7   1.5e-16   8.8e-13       1      73 []     367     451 ..     367     451 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.2
                 TH-HHHHHHHHHHHHHHHHHC..........HHHHHH CS
      ADSL_C  15 glgReeAyelVqeaamkawee..........llelLa 41 
                  ++R++ ++ ++e ++ a  e          l e+++
  KIR64544.1  73 RVTRHDVKARIEEFSALAGHEhvhkgmtsrdLTENVE 109
                 6889999999999888888887777777555444443 PP

  == domain 2  score: 48.6 bits;  conditional E-value: 1.5e-16
                 TGGGHHHHHHHHH.HTH-HHHHHHHHHHHHHHHHHC..........HHHHHHT-HHHHCHHCHHHHHT.-GGGCCTTHHHHHHHH CS
      ADSL_C   1 GlifservllaLv.kglgReeAyelVqeaamkawee..........llelLaadpevkkseeeldalf.dpayylgsadeivdrv 73 
                 +++++ ++l+a+v +g+gRe A+e ++e+a  ++            l+++Laad+++ +s++++dal  d ++++g a+++vdrv
  KIR64544.1 367 PFLATTKILVAAVrRGVGREAAHEAIKEHAVGVALAmreqgatendLFDRLAADDRLGLSRADIDALIaDRTAFVGTAGAQVDRV 451
                 6899*********66****************99999999*******************9888*****99***************8 PP

>> ETF_alpha  Electron transfer flavoprotein FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       0.5     3e+03       7      59 ..     223     278 ..     217     283 .. 0.58
   2 ?    9.6   0.1   0.00015      0.92      12      62 ..     397     449 ..     369     453 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.5
                 S-EEEE-GGGSSGGGHHHHHHHHHHHT-E..EEE-.HHHHTTTSS-CCCB-SSSS- CS
   ETF_alpha   7 kvvvsgGrGlkskenlelleelaealgaa..vgas.RavvdagwipeerqvGqtGk 59 
                 +v+ s+G+   ++ +l++l++la+   a   ++ + R +v +++++e    Gq G 
  KIR64544.1 223 RVLDSVGQVYPRSIDLAVLAALAQVAAAPssLATTiRLMVGQELATEGFKPGQVGS 278
                 55556666666667777777777776643223333366666666666655555555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00015
                 E-GGGSSGGGHHHHHHHHHHHT-E..EEE-HHHHTTTSS-CCCB-SSSS---- CS
   ETF_alpha  12 gGrGlkskenlelleelaealgaa..vgasRavvdagwipeerqvGqtGktva 62 
                 +G +l+ +e+ +  ++l + l a+  +g sRa +da +++++  vG+ G +v+
  KIR64544.1 397 VGVALAMREQGATENDLFDRLAADdrLGLSRADIDALIADRTAFVGTAGAQVD 449
                 66666677777777788888876555***********************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3551.32
//
Query:       KIR64545.1  [L=227]
Description: peptidase S1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-26   91.5   8.0    8.9e-26   91.1   8.0    1.1  1  Trypsin   Trypsin
    1.5e-06   28.5   0.0    2.3e-06   28.0   0.0    1.3  1  DUF1986   Domain of unknown function (DUF1986)
     0.0063   15.4   1.7     0.0074   15.2   1.7    1.0  1  PigN      Phosphatidylinositolglycan class N (PIG-N)


Domain annotation for each model (and alignments):
>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   8.0   1.5e-29   8.9e-26      10     211 ..      41     215 ..      34     222 .. 0.83

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 1.5e-29
                 TSSTTEEEEEETTCEEEEEEEEEETTEEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCB CS
     Trypsin  10 gsfpwqvslsvksgkhlCgGslisenwvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpic 108
                  s pw +++  ++ + +C+Gs+i + wvlTA HCvs+   ++v++g+  +   +g+  +++v+          s + +D+all+l++      t+++++
  KIR64545.1  41 SSAPWAAAVFSNG-SFTCSGSVIASTWVLTARHCVSG--TMSVRIGS--VYYASGG-TTRTVSA---------SYTRYDLALLRLSSA----VTTSTVS 120
                 478********99.79********************9..999999*8..6666664.4455555.........44469*********9....7888999 PP

                 BCSTTHTTSTTTEEEEEESSBSSTSS..BSSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEESSSSCT CS
     Trypsin 109 lpaassslpvgttclvsGwgrtkekg..ksdtlqevevpvvsretcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswgkgcakg 205
                 l+++++  pv++t ++ Gwg t  +g   s++l+++ v+v+s++  + + ++ ++++ +          a +GDSGGP + +++ +vG+ s  +g + +
  KIR64545.1 121 LASSNP--PVNSTNTIYGWGMTCYSGcgASSQLKTASVRVTSTSVTDAYGGQAIRSTAVNGN-------AWRGDSGGPQFYNGQ-QVGVASTADGVSIQ 209
                 999655..9************8888888**************98777744444666655555.......59*************.************99 PP

                 TSEEEE CS
     Trypsin 206 nrpgvy 211
                 n+ +v+
  KIR64545.1 210 NYGSVA 215
                 986654 PP

>> DUF1986  Domain of unknown function (DUF1986)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   3.8e-10   2.3e-06       2      60 ..      44     101 ..      43     136 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 3.8e-10
     DUF1986   2 PwladvyleGdlicsGvlidkswvlvsesclsdvdlehsyvsvvlGgaktkksvkgpye 60 
                 Pw a v+ +G+++csG +i  +wvl    c+s++    +  sv   ++ t ++v ++y 
  KIR64545.1  44 PWAAAVFSNGSFTCSGSVIASTWVLTARHCVSGTMS-VRIGSVYYASGGTTRTVSASYT 101
                 9******************************99754.6777888888888888887775 PP

>> PigN  Phosphatidylinositolglycan class N (PIG-N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.7   1.2e-06    0.0074     166     284 ..      38     160 ..       6     166 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-06
        PigN 166 nsllsllWllsclllsvFpll.pvekte..nltlvvlggllilliglllllksl..skksvsrall.vqvllvvlsllvtrssvsslqakqglpllnqv 258
                  ++ s+ W+++++  + F++  +v  +    +   +++g +++ ig ++ +  +  ++++vs++++   + l+ ls++vt+s+vs  +++  + + n++
  KIR64545.1  38 GTVSSAPWAAAVFSNGSFTCSgSVIASTwvLTARHCVSGTMSVRIGSVYYA--SggTTRTVSASYTrYDLALLRLSSAVTTSTVSLASSNPPVNSTNTI 134
                 566778899999999999999666655544344457788888888888832..23467778888899999**************9999*********** PP

        PigN 259 asWiilvlslvlpllksskplsRlls 284
                  +W + ++s +   ++ ++  +R++s
  KIR64545.1 135 YGWGMTCYSGCGASSQLKTASVRVTS 160
                 *********88656666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1671.13
//
Query:       KIR64546.1  [L=87]
Description: phosphoribosylformylglycinamidine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-25   87.6   0.0    5.3e-25   87.4   0.0    1.1  1  PurS      Phosphoribosylformylglycinamidine (FGAM) synthase
  ------ inclusion threshold ------
      0.049   13.8   0.0       0.08   13.2   0.0    1.3  1  DUF1161   Protein of unknown function (DUF1161)


Domain annotation for each model (and alignments):
>> PurS  Phosphoribosylformylglycinamidine (FGAM) synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   0.0     6e-29   5.3e-25       2      76 ..       4      75 ..       3      76 .. 0.94

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 6e-29
                EEEEEEE-TTS--HHHHHHHHHHHHTTHTTEEEEEEEEEEEEEEE-SSHHHHHHHHHHHHHHTTS-TTTEEEEEE CS
        PurS  2 akveVtlKkgvlDpqGkavkkalkslgyeevedvrvgkyieleleaedeeeaeeeveemceklLaNpviedyeie 76
                + v+V+lK+++lDpqG+av++al +lg+++v +vr+g++ie+++++e +    ++++e+++klLaNpvied++++
  KIR64546.1  4 VVVDVMLKPEILDPQGQAVANALPRLGVSDVASVRIGRRIEIDFTGEPD---LDRAREIADKLLANPVIEDFTVR 75
                78*******************************************8743...679*****************997 PP

>> DUF1161  Protein of unknown function (DUF1161)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.9e-06      0.08       6      31 ..      57      83 ..      54      86 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.9e-06
     DUF1161  6 aeIeaKiqangV.tsytLeiVpndqaa 31
                 eI+ K+ an V +++t+ +V+ d+ a
  KIR64546.1 57 REIADKLLANPViEDFTVRLVETDETA 83
                69**********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 642.08
//
Query:       KIR64547.1  [L=227]
Description: phosphoribosylformylglycinamidine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-33  115.6   0.0    3.2e-33  114.9   0.0    1.2  1  GATase_5       CobB/CobQ-like glutamine amidotransferase doma
    1.4e-07   31.4   0.0      3e-07   30.2   0.0    1.6  2  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
    3.3e-06   27.0   0.0    4.5e-06   26.6   0.0    1.4  1  GATase         Glutamine amidotransferase class-I
    2.8e-05   24.0   0.0    3.9e-05   23.5   0.0    1.3  1  DJ-1_PfpI      DJ-1/PfpI family
     0.0051   16.6   0.4      0.024   14.4   0.4    2.0  1  Peptidase_C26  Peptidase C26
     0.0052   16.7   0.0      0.008   16.0   0.0    1.2  1  SNO            SNO glutamine amidotransferase family


Domain annotation for each model (and alignments):
>> GATase_5  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.0   1.1e-36   3.2e-33       2     236 ..       3     207 ..       2     212 .. 0.88

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 1.1e-36
    GATase_5   2 pkvailreeGvngeyemaaafekaGfeavdvhmsdllegrvslddfqilalpGGfsygDelgsgkgwakslllneklrealekflnredtlaLGiCnGf 100
                  +v +++++G+  + ++a+a++ aG+e v+     l +g+ +l+ +  ++lpGGfsygD l  g+++     + + + e l +  +r +  +LGiCnGf
  KIR64547.1   3 ARVGVVTFPGSLDDGDAARAVRIAGAEPVR-----LWHGDPDLRGVDAVVLPGGFSYGDYLRCGAIAR----F-APVMETLVDA-ARGGLPVLGICNGF 90 
                 5899************************66.....578999********************9997654....3.2344444443.4547779******* PP

    GATase_5 101 qlLvklglvpggeieeaeksptltrNksgrfesrlvsv.vvsekspsvfl.kgmeglslpvahGeGrfvfkseevlkeleangqvalrYvdeegkptee 197
                 q+L++ +l+pg          +ltrN++  f+ r   + +  + + +    + ++++ +pv+ GeG  v+ ++++l++lea+g v++rYv         
  KIR64547.1  91 QILCEAHLLPG----------ALTRNQHLHFRNRDQVLrIEAAGTAWTNAfQAGQEILIPVKNGEGCYVA-DAATLDQLEAEGRVVARYVGG------- 171
                 ***********..........9*********998877744456688887669999***************.99******************9....... PP

    GATase_5 198 yplNPNgSpegiagitspdGRvlalmpHpervveavqks 236
                    NPNgS+++ia+it+p G v+++mpHpe +vea+  +
  KIR64547.1 172 ---NPNGSQRDIAAITNPAGNVVGIMPHPEHAVEALTGP 207
                 ...****************************99988765 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0     1e-10     3e-07      24      91 ..      28      96 ..      17     110 .. 0.80
   2 ?   -3.1   0.0       1.7   5.1e+03      16      37 ..     155     176 ..     153     192 .. 0.61

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1e-10
    GATase_3 24 evrvrfvplkdeslgedadlvilpGgkdtiqdl...allresgldeaikeaaeaggpvlgiCGGlqmLGee 91
                ++ vr  +  d +l   +d+v+lpGg+++ + l   a++r   + e + +aa+ g pvlgiC G+q+L+e 
  KIR64547.1 28 AEPVRLWH-GDPDLRG-VDAVVLPGGFSYGDYLrcgAIARFAPVMETLVDAARGGLPVLGICNGFQILCEA 96
                55566666.6778855.**********8877662226778888899***********************96 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.7
    GATase_3  16 ldpLeaepevrvrfvplkdesl 37 
                 ld Leae++v  r+v  + +  
  KIR64547.1 155 LDQLEAEGRVVARYVGGNPNGS 176
                 5667777777777776444444 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.5e-09   4.5e-06      40      88 ..      40      97 ..      21     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.5e-09
                HHSTSEEEEEEESSCTT..........TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHT CS
      GATase 40 lknpdgilvsgGpgspg..........vegkieaikearenkiPiLGICLGmQllaief 88
                l ++d+++++gG+ +            +  + +++  ar+ ++P+LGIC G+Q+l+++ 
  KIR64547.1 40 LRGVDAVVLPGGFSYGDylrcgaiarfAPVMETLVDAARG-GLPVLGICNGFQILCEAH 97
                7789*********999999999999988888888888888.**************9986 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.3e-08   3.9e-05      62     116 ..      43     102 ..      34     152 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.3e-08
                 -SEEEE--BHHHHHHHHTSH.....HHHHHHHHHHHTT-EEEEETTTHHHHHHTTTTTTS CS
   DJ-1_PfpI  62 yDalvlpGGragperlrene.....kvvelvkefaekgklvaaICagpqlLaaagvlkgr 116
                  Da+vlpGG +  ++lr  +      v+e++ ++a+ g +v  IC g q+L +a +l+g 
  KIR64547.1  43 VDAVVLPGGFSYGDYLRCGAiarfaPVMETLVDAARGGLPVLGICNGFQILCEAHLLPGA 102
                 7***********999996554444488999999************************985 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.4   8.2e-06     0.024      95     121 ..      70      96 ..      16     121 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.2e-06
  Peptidase_C26  95 laLiraalergvPilgiCrGlqllnva 121
                    +  +  a + g+P+lgiC G+q+l  a
     KIR64547.1  70 METLVDAARGGLPVLGICNGFQILCEA 96 
                    55566788899************9654 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.7e-06     0.008      15      83 ..      23      95 ..      13     113 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.7e-06
                HHHTTSEEEEE.-SGGGGCC-SEEEE-SS-HHH....HHHHHHHTT-HHHHHHHHHTT.--EEEETHHHHHHCC CS
         SNO 15 ikkclaenktv.krkedlaevdaliiPGGesta....mskliertglyedllefvknsekvvlGtCaGlillsk 83
                ++ ++ae   +     dl +vda+++PGG s       + ++    ++e+l + ++ + ++vlG C G+ +l++
  KIR64547.1 23 VRIAGAEPVRLwHGDPDLRGVDAVVLPGGFSYGdylrCGAIARFAPVMETLVDAARGG-LPVLGICNGFQILCE 95
                55555555444133569***********998642222678999999999999988877.*********988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1829.99
//
Query:       KIR64548.1  [L=978]
Description: phosphoribosylformylglycinamidine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-52  177.7   3.2    1.8e-33  115.9   0.6    2.3  2  AIRS_C          AIR synthase related protein, C-terminal doma
    3.7e-47  158.9   4.2    5.4e-23   81.5   0.2    2.6  2  AIRS            AIR synthase related protein, N-terminal doma
    3.2e-16   59.6   0.0    6.5e-16   58.6   0.0    1.5  1  FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransfe


Domain annotation for each model (and alignments):
>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.6     3e-37   1.8e-33       2     148 ..     270     418 ..     269     422 .. 0.98
   2 !   62.2   0.1     1e-20   6.1e-17       4     149 ..     657     795 ..     654     801 .. 0.83

  Alignments for each domain:
  == domain 1  score: 115.9 bits;  conditional E-value: 3e-37
                 TTEEEEEEET....SSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHHHTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHH CS
      AIRS_C   2 pGdvliltgs....lGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaalkglvkaahDvTgGGLlgalaemapasgvgaeidldkvpi 96 
                 pG+v++l+g     +G+gg++++++++ +e +++ +++vq+gd+++e+ li+++++l  + +lv +++D++g GL++al e a+ +g g+++ l++vp+
  KIR64548.1 270 PGNVVVLMGArtgrDGIGGVSVLASATFDEGSEQRRPSVQVGDPFMEKLLIEACLELYDA-ELVVGIQDLGGAGLTCALTETAASAGTGMRVWLERVPL 367
                 9********************************9888**********************9.************************************** PP

                 HHHHHHHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEEEEEES CS
      AIRS_C  97 fdelesplemllsensGrllvavppeeadavlaileeeglpeaavIGevtak 148
                 ++  ++p+e+l se+++r+l++v+p++ +avl+++e++g+  a+ IGevta 
  KIR64548.1 368 REASMEPQEILASESQERMLLVVAPDKLEAVLKTAEKWGV-WATAIGEVTAP 418
                 ****************************************.6********85 PP

  == domain 2  score: 62.2 bits;  conditional E-value: 1e-20
                 EEEEEEETSSCTCCHHHHHHHCHHHCTSHTTTSE.HHHHHHHHHHHHHHHHHHHHHTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHHHHHHH CS
      AIRS_C   4 dvliltgslGlggagtslkrkileeeglddsavq.lgdvlleptliyvkralaalkglvkaahDvTgGGLlgalaemapasgvgaeidldkvpifdele 101
                 d l+l+g+ ++  +g s+ +  +++e+l   + +  +d+ +e+ l ++ +++a+  g+ ++ahD+++GGL+ +l e +   gvga+i ++  + f+   
  KIR64548.1 657 DQLFLLGETHVELSG-SE-WAWVTHEHLG--GIPpQVDLGRERQLADLLAEAARV-GHLSSAHDLSDGGLVQSLVESCLRRGVGAVIAVP--EQFAGGS 748
                 566677774444444.33.2223333322..445599999**9999***9****9.**********************************..9999988 PP

                 HHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEEEEEESS CS
      AIRS_C 102 splemllsensGrllvavppeeadavlaileeeglpeaavIGevtake 149
                  p+  l+se+ Gr lv+vp+ +++a++a+++e+g+p ++ IG + + +
  KIR64548.1 749 MPFVFLFSESAGRALVSVPRGHEKAFTALCAERGVP-WEFIGVTDPAG 795
                 9**********************************7.*****987764 PP

>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.5   9.3e-26   5.5e-22       3      93 ..     154     256 ..     143     257 .. 0.94
   2 !   81.5   0.2   9.1e-27   5.4e-23       5      93 ..     533     636 ..     518     637 .. 0.93

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 9.3e-26
                 SEEEEEEEEEE.EECCTCCCCHHHHHHHHHHHHHHTTTEEEEEEEEEEEEC.........HHHHHHHHHHHHHHHTT-EEEEEEEEEESS....EEEEE CS
        AIRS   3 aavvvttdshnrpvlvepvhfiGakavavnlsDlaamGArPlalllslalp.........wleevvrglaeaaeelgvplvgGdtsfsne....ptisv 88 
                  av+++++shn+p++vep+++ +a++v+++++D++amGArP+a+++ l ++          l +vv+g++ ++++lg p +gG++ f+++    p++++
  KIR64548.1 154 LAVTFKVESHNHPSFVEPYQG-AATGVGGIVRDILAMGARPVAVMDPLRFGaaehpdtarVLPGVVAGVGGYGNCLGLPNIGGEVVFDPCyqgnPLVNA 251
                 45799****************.******************************************************************9999******* PP

                 EEEEE CS
        AIRS  89 tavGl 93 
                  ++G+
  KIR64548.1 252 LCLGV 256
                 ***98 PP

  == domain 2  score: 81.5 bits;  conditional E-value: 9.1e-27
                 EEEEEEEEE.EECCTCCCCHHHHHHHHHHHHHHTTTEEEEEEEEEEEEC.........HHHHHHHHHHHHHHHTT-EEEEEEEEEESS.......EEEE CS
        AIRS   5 vvvttdshnrpvlvepvhfiGakavavnlsDlaamGArPlalllslalp.........wleevvrglaeaaeelgvplvgGdtsfsne.......ptis 87 
                 v+++ d+++r+  ++p+h+ +++a+a++++++a++GA+P+a++++l+++         +++e+vrgla+++ elg+p++gG++sf+n+       pt++
  KIR64548.1 533 VALSLDGNGRYARLDPYHG-TKLALAEAYRNVAVTGAKPIAVTNCLNFGspedpgvmwQFAEAVRGLADGCLELGIPVTGGNVSFYNQtgaaaihPTPV 630
                 699****************.******************************************************************999********** PP

                 EEEEEE CS
        AIRS  88 vtavGl 93 
                 v+++G+
  KIR64548.1 631 VGVLGV 636
                 ****98 PP

>> FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransferase linker domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   1.1e-19   6.5e-16       3      50 .]      74     118 ..      73     118 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 1.1e-19
  FGAR-AT_linker   3 eankelglaLsdeEidylqeafeklgrnPtdvElemfaqvwSEHCrHK 50 
                     e++ + +l+L d+E+d+++++   lgr Pt +El m++ +wSEHC++K
      KIR64548.1  74 ELQPYAELGLRDDEYDRIRQI---LGRRPTQAELAMYSIMWSEHCSYK 118
                     77889****************...9**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (978 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 6617.18
//
Query:       KIR64549.1  [L=253]
Description: lipoprotein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-18   67.2   0.0    1.5e-18   66.9   0.0    1.0  1  2-ph_phosp     2-phosphosulpholactate phosphatase


Domain annotation for each model (and alignments):
>> 2-ph_phosp  2-phosphosulpholactate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   8.1e-23   1.5e-18      14     225 ..      30     245 ..      21     246 .. 0.88

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 8.1e-23
                 TEEEEE-TTTHHHHHHHHHHTT-SEEEEESSHHHHHHTCCH.HGCCEEEEE-BTTB--TTSSB-S-GGGHHHHHHTTSEEEEE-CCHHHHHHHCCT.SS CS
  2-ph_phosp  14 dvvvviDvLRAtstivtaLanGakavipvssveealelakklpeekvllaGErgglkiegfdlgnSPleytkekvkgktvvltTtNGTralekaas.ak 111
                  v vv+DvL  t+ + +a a+G+ +v p+   e+a e+a+++ +  v  +G r++ + +    + SP  + +   +  ++vl + NG+   ++a++   
  KIR64549.1  30 AVLVVVDVLSFTTAVEVAVARGM-RVHPFPWGEQAAEYARRVGA--VAAVGRRQATPDQPW--SLSPAAL-RTAPAVADLVLPSPNGSAISAAASAtGL 122
                 478******99999999999987.6***************9987..99******9988887..7788776.44466789********988888887679 PP

                 EEEEE-STTHHHHHHHHHHHTS...S..EEEEE--BT.....TB--HHHHHHHHHHHHHHHHHS.SEE-HHHHHHHHHHHC-STHHHHHHHSHHHHHHH CS
  2-ph_phosp 112 rvligsllNakavaeklkelak...e..vvivcaGte.....gefsleDtlcAgalveelekeeelelsDaalaalalyeskedllealkksshgkrLk 200
                  v++++l+Na+av ++l ++     +  v +v++G++      + ++eD l A  ++++l       ls +a ++la++ + +d+ +a++ + +g++L 
  KIR64549.1 123 PVVAACLRNARAVGRWLTDQGYgsiDapVGVVASGERwpdgsLRPCVEDQLGAACVLDALSGV-PGGLSVEAAMTLAALAATPDVPAAVRGCVSGRELV 220
                 ******************9988666368********888877799*****************4.567888888888888888***************** PP

                 HTT-HHHHHHHTSTSS----EEEET CS
  2-ph_phosp 201 elgleeDleycaqldlldvVpvlke 225
                 e g+  D+e+++q++++ vVpvl++
  KIR64549.1 221 EGGFGGDVEVAVQVGVSGVVPVLRQ 245
                 **********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1933.31
//
Query:       KIR64550.1  [L=743]
Description: hypothetical protein TK50_02490 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-08   32.7   6.0    7.8e-08   32.5   1.6    2.9  2  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
    0.00038   20.4   0.5    0.00081   19.3   0.1    1.8  2  CarbopepD_reg_2  CarboxypepD_reg-like domain
  ------ inclusion threshold ------
       0.03   13.1   0.6       0.23   10.2   0.0    2.3  3  BatD             Oxygen tolerance
        9.1    7.0  15.2         35    5.1   0.4    3.6  2  Cadherin_4       Bacterial cadherin-like domain


Domain annotation for each model (and alignments):
>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.15   6.6e+02      12      70 ..      63     117 ..      53     135 .. 0.65
   2 !   32.5   1.6   1.7e-11   7.8e-08       1      76 [.     153     231 ..     153     238 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.15
  CarboxypepD_reg  12 apiagatVtvtnadtgtvastt.tdadGafrlrglppgtysvtvsapGyatatreevtlt 70 
                      +  a a++++t    g  a++  t+  G+ +++g +p t  +t+ a+  a+ +  ++ +t
       KIR64550.1  63 NDDASAQISLT----GLPAGVScTGGCGQISFNGQAPRTQLLTIKASDSAPDAG-GINVT 117
                      44566777777....665555437888888888888888888887777776664.23333 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 1.7e-11
  CarboxypepD_reg   1 tisGrVtda.sgapiagatVtvtnadtgtvastttdadGafrlrglpp...gtysvtvsapGyatatreevtltagqttt 76 
                      ++sG+V+ a +g+++++a V+++ ++ g +++tt++ +G+f+++g +     + ++ + a   + +  +++t +agq++t
       KIR64550.1 153 SVSGKVVAAaNGEAVPNAVVMLQ-DSAGHRYETTSNGSGNFSFTGSTSrpiAPGRLDIGAIQGEVRVAKSFTASAGQSVT 231
                      69*****9769************.5899****************987766766677777777777777778888888765 PP

>> CarbopepD_reg_2  CarboxypepD_reg-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.5   1.1e+04      18      39 ..     117     135 ..     113     139 .. 0.55
   2 !   19.3   0.1   1.8e-07   0.00081       1      41 [.     154     197 ..     154     203 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.5
  CarbopepD_reg_2  18 tVyvkgtkkgtvTdenGnFelk 39 
                      tV+v+  k   +T   G+F+l+
       KIR64550.1 117 TVQVQPDKSDSTT---GSFQLN 135
                      5555544444444...777775 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.8e-07
  CarbopepD_reg_2   1 isGtVvdketkeplpgatVyvkgt...kkgtvTdenGnFelknl 41 
                      +sG+Vv + ++e++p a V+++++   +  t+++ +GnF+++  
       KIR64550.1 154 VSGKVVAAANGEAVPNAVVMLQDSaghRYETTSNGSGNFSFTGS 197
                      79*******************7753327************9865 PP

>> BatD  Oxygen tolerance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   1.4      0.14   6.2e+02      81     114 ..     120     152 ..      30     202 .. 0.61
   2 ?    3.1   1.4    0.0076        34     205     259 ..     201     250 ..      87     261 .. 0.86
   3 ?   10.2   0.0   5.1e-05      0.23     374     461 ..     238     327 ..     224     340 .. 0.53

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.14
        BatD  81 LapkkeGtltIpaatievdgktyksnpitikVlk 114
                 ++p k+ + t ++++++v+gk   + p + + +k
  KIR64550.1 120 VQPDKSDSTT-GSFQLNVKGKAAPTTPAQTQTVK 152
                 4444444333.44444444444444444433333 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0076
        BatD 205 PqksGkltIpplefdgtvevrsqrrdfngggyrevkkrvsspavtitVkplPaeg 259
                 P   G l+I +++ +++v +      f+   +++v+ ++ s a++++V+p P+  
  KIR64550.1 201 PIAPGRLDIGAIQGEVRVAKS-----FTASAGQSVTGQRLSLAIKVEVSPSPSPS 250
                 777899999998888887333.....44456899999999999999999999844 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 5.1e-05
        BatD 374 eitikVekgaaaasspasstsaspaqkeevkllgkdirfik...geaslkkkgsfflfw..lllllplllf..vvllllwrkrrrenadvaaskk 461
                 +i+++V++ +    sp++s+++ p+++++ + +++ +++     ++a+ ++++s  + w  +ll  +++++    ++llw krr++  dv   +k
  KIR64550.1 238 AIKVEVSPSP----SPSASEEPLPSDEATDDATEEPTEAAPgaaNNAASTEEDS-GMSWllILLGGLFVAIgvGTIVLLWMKRRENGDDVDDAPK 327
                 3445553333....3333344444444444444444444443333333333333.2555226666666776876677777777776666655554 PP

>> Cadherin_4  Bacterial cadherin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   8.9     0.028   1.2e+02       1      68 [.      53     138 ..      53     194 .. 0.72
   2 ?    5.1   0.4    0.0077        35       8      52 ..     268     331 ..     261     358 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.028
  Cadherin_4   1 atvtitvtgvndaPvavddsatvtedtpltitagnvl..............andtDvdgddltvtavtvag.....tyGtltlnadG 68 
                 atv+++vt+ nd+  a+      + + + t+  g++               a d+ +d + + vt v+v++     t G++ ln  G
  KIR64550.1  53 ATVSVKVTPGNDDASAQISLTGLPAGVSCTGGCGQISfngqaprtqlltikASDSAPDAGGINVT-VQVQPdksdsTTGSFQLNVKG 138
                 8***************9998888887777743344442222222222366677777777776655.333442222255777766655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0077
  Cadherin_4   8 tgvndaPvavddsatvtedtplt.............itagnvl...........andtDvdgddltvta 52 
                 +++  aP a++++a+++ed+  +             +                 +n  Dvd+ + + +a
  KIR64550.1 268 EPTEAAPGAANNAASTEEDSGMSwllillgglfvaiG-----VgtivllwmkrrENGDDVDDAPKSGAA 331
                 68899**************999966665555554441.....033445788888888888877754443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.49
# Mc/sec: 4573.00
//
Query:       KIR64551.1  [L=121]
Description: hypothetical protein TK50_02495 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-43  144.1   1.3    1.1e-42  143.8   1.3    1.1  1  SCP_3     Bacterial SCP ortholog
    8.7e-05   23.3   7.8    0.00018   22.3   7.8    1.6  1  MDMPI_C   MDMPI C-terminal domain
  ------ inclusion threshold ------
      0.046   14.1   0.0        0.1   13.0   0.0    1.6  2  SCP2_2    Sterol carrier protein domain


Domain annotation for each model (and alignments):
>> SCP_3  Bacterial SCP ortholog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.8   1.3   1.8e-46   1.1e-42       2      93 .]      26     117 ..      25     117 .. 0.98

  Alignments for each domain:
  == domain 1  score: 143.8 bits;  conditional E-value: 1.8e-46
       SCP_3   2 RaalaaavrltleelaekapGksvEvRvpPfaavqcveGprhtrgtPpnvvetdpetwlalatGlleweeavaagrvsasGeradlsalLPl 93 
                 R  +++avr++l++l+e+apG+svEvRvpP++avqc+ GprhtrgtPpnvve+dp+twl+latG+ +w++av++grv++sG radlsa+LPl
  KIR64551.1  26 RLVFREAVRALLTALTERAPGRSVEVRVPPYGAVQCIPGPRHTRGTPPNVVELDPTTWLELATGRRSWADAVTEGRVRVSGVRADLSAHLPL 117
                 677899*************************************************************************************8 PP

>> MDMPI_C  MDMPI C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   7.8     3e-08   0.00018       7      90 ..      33     112 ..       7     113 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 3e-08
     MDMPI_C   7 vdellatvvarraaapd......srvvlelegprtvhlhatdggrarlalwadgadatvrGtaadlllllwGRlspddt.....levdGdralla 90 
                 v  ll+ ++ r+++++        ++v++ +gpr+++ +++               ++v+++++++l l++GR+s++d+     + v+G ra+l 
  KIR64551.1  33 VRALLTALTERAPGRSVevrvppYGAVQCIPGPRHTRGTPP---------------NVVELDPTTWLELATGRRSWADAvtegrVRVSGVRADLS 112
                 44444444444444333666666777777777777777777...............9*********************99999999999999875 PP

>> SCP2_2  Sterol carrier protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.63   3.7e+03      71      83 ..      22      34 ..       9      49 .. 0.58
   2 ?   13.0   0.0   1.7e-05       0.1      48      86 ..      69     106 ..      47     117 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.63
                S-HHHHHHTTSSB CS
      SCP2_2 71 rsaseLarlgrie 83
                r++++L++ + ++
  KIR64551.1 22 RTPERLVFREAVR 34
                3345555544444 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.7e-05
                 SCE-SCE..EEEEHHHHHHHHTTSS-HHHHHHTTSSBSSH CS
      SCP2_2  48 keeeada.dltldiqtLaqlllGyrsaseLarlgriegae 86 
                 +++  ++  ++ld+ t  +l +G rs +++++ gr++ + 
  KIR64551.1  69 RGT--PPnVVELDPTTWLELATGRRSWADAVTEGRVRVSG 106
                 333..3447****************************443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 827.21
//
Query:       KIR64552.1  [L=512]
Description: amidophosphoribosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-18   66.9   0.1    3.5e-18   66.1   0.1    1.4  1  GATase_6      Glutamine amidotransferase domain
    4.1e-18   65.5   0.0    6.7e-18   64.8   0.0    1.3  1  GATase_7      Glutamine amidotransferase domain
      7e-07   28.3   1.4      0.034   12.9   0.1    3.2  3  GATase_2      Glutamine amidotransferases class-II
    8.4e-07   28.6   0.2    2.4e-06   27.2   0.0    1.8  2  Pribosyltran  Phosphoribosyl transferase domain
    1.4e-06   27.4   0.1    8.2e-06   24.9   0.1    2.1  1  GATase_4      Glutamine amidotransferases class-II
     0.0022   17.5   0.0     0.0061   16.0   0.0    1.7  1  DUF3700       Aluminium induced protein


Domain annotation for each model (and alignments):
>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.1   1.2e-21   3.5e-18      10     134 .]      85     218 ..      61     218 .. 0.87

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 1.2e-21
    GATase_6  10 vedevalaHvRlaivglaeeegaqPf...psedgrlllvhNGeiynykelreelpalkgla.frsrsDtevllall........eelGeevlerlrGmf 96 
                  ++++a++H+R +++g ++ e aqP    +s+  +++l+hNG   n  el++++++ +gla   s++Dt ++  ll        e ++ evl +lrG+f
  KIR64552.1  85 LRGHLAIGHARYSTTGGSTWENAQPTirsTSAGTTIALAHNGNLVNTAELQRDVAE-RGLAaDGSTNDTSLVTMLLasrpdlsvEAAALEVLPQLRGAF 182
                 35679*************88888***996677777*********************.77774777*********8867877775555599999****** PP

    GATase_6  97 afaiwdkrentlilardrlgvkplyyavdesglafase 134
                 +f+++d  e+tl  ard +gv+pl+ +  e+g ++ase
  KIR64552.1 183 SFVFMD--ESTLYAARDPHGVRPLVLGRLERGWVVASE 218
                 **9999..789999***********************8 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   2.3e-21   6.7e-18      11     121 ..     105     222 ..      93     223 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 2.3e-21
    GATase_7  11 agaQPmvs..sedgrlvivfnGeiyNykelreeLeakghrf.rtksDtevllallea.......ewgeealerlnGmfAfaiwdeeekrlllaRDrlGi 99 
                 ++aQP ++  s++ ++++++nG ++N+ el+++ +++g++   ++ Dt++++ ll++       +   e+l +l+G f+f+ +de++  l++aRD+ G+
  KIR64552.1 105 ENAQPTIRstSAGTTIALAHNGNLVNTAELQRDVAERGLAAdGSTNDTSLVTMLLASrpdlsveAAALEVLPQLRGAFSFVFMDEST--LYAARDPHGV 201
                 6899*9987668889***********************98834689*****9999999***99988999*****************9..********** PP

    GATase_7 100 kPLyygedkgdallfaSelkal 121
                 +PL +g+ + +++++aSe  al
  KIR64552.1 202 RPLVLGRLE-RGWVVASETAAL 222
                 ********6.79******9998 PP

>> GATase_2  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0036        11      25      59 ..      43      77 ..      32      83 .. 0.83
   2 !   12.9   0.1   1.1e-05     0.034     193     237 ..      77     131 ..      65     140 .. 0.67
   3 !    8.9   0.0   0.00018      0.54     332     396 ..     182     243 ..     176     252 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0036
                HHHGGGGS-B-TTSSSBSEEEEEEE--HHHHHHHH CS
    GATase_2 25 lenleHRGavgadektGDGaGillqiPdeflrkea 59
                l  l+HRG  +a     DG+G+++ +   ++++++
  KIR64552.1 43 LYALQHRGQEAAGIAVSDGSGVVVYKDLGLVAQVF 77
                6789******************9987777766665 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.1e-05
                 BHGGGSTT--BSEEEEEE---SSSS--GGGSSS-.S........SEEEEE-.-TT CS
    GATase_2 193 ykdlkdeelesalalvHsRfstntfPsWelaqPl.R........llaHnGE.int 237
                 + + + ++l+ +la+ H R+st    +We aqP  R         laHnG+ +nt
  KIR64552.1  77 FDEPTLASLRGHLAIGHARYSTTGGSTWENAQPTiRstsagttiALAHNGNlVNT 131
                 555566778899*********************7232222222235666652344 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00018
                 EEEEEE-SSEEEEEE-TT--S--EEEEETT--EEEESSTTSS---GGGEEEEEE--TT-EEEEET CS
    GATase_2 332 alivftdGkvvgavLDRnGLRPaRylvtkddlvvlasEvGvldleeeevvekgrlqPGrmllvdl 396
                  ++vf+d  ++ a  D  G+RP      + +  v+asE+  ld+  ++vv+   ++PG+++++d 
  KIR64552.1 182 FSFVFMDESTLYAARDPHGVRPLVLGRLERG-WVVASETAALDIVGASVVR--EVEPGELIAIDE 243
                 5789******************987777666.568**************97..589*******95 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   3.4e+03      30      48 ..     202     220 ..     196     231 .. 0.88
   2 !   27.2   0.0   8.1e-10   2.4e-06      20     120 ..     291     394 ..     276     397 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
                   GEEEEEEETTTHHHHHHHH CS
  Pribosyltran  30 pdvvvgiargGvpfakila 48 
                   +++v+g + +G+++a+++a
    KIR64552.1 202 RPLVLGRLERGWVVASETA 220
                   68999**********9988 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 8.1e-10
                   EEEEEE--GGGEEEEEEETTTHHHHHHHHHHSTT-EE.-EEEEEE-TTT--EE.................EE----TTSEEEEE-SEESSSHHHHHH CS
  Pribosyltran  20 aeileeyngkpdvvvgiargGvpfakiladeLevpla.yvrkvkyrpdgseeaargssdes.........rlledpagkkVliVDDildtGgTllaa 106
                   +e+  e     d+v++++  G p a  +a e ++ +   + k  y + +  + ++++   +          l e+++gk+ ++VDD +  G+T +a+
    KIR64552.1 291 KEHPVE----ADLVIPVPESGTPAAIGYAEESGITYGaGLMKNPYVGRTFIQPSQTL---RqlgirlklnPLRENVRGKRLVVVDDSIVRGNTQRAI 380
                   444333....78888888888888888888885444334444444444444433333...1234556666899************************ PP

                   HHHHHCC-BSEEEE CS
  Pribosyltran 107 lelLkekgpeevri 120
                   ++ L+e+g+ ev++
    KIR64552.1 381 VRMLREAGALEVHV 394
                   *********99985 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   2.7e-09   8.2e-06      17     118 ..      41     135 ..      33     206 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 2.7e-09
    GATase_4  17 fsftgfaarggltd..ahadGwGiafye..gkaarvfkdpepsaesplaelvreypiksknvvaHiRkatqGevklenthpFvRel.wgrewifAHnGd 110
                 f + ++++rg++++  a +dG G+  y+  g  a+vf +p+ +             ++ ++++ H R  t+G  + en++p +R+  +g ++ +AHnG+
  KIR64552.1  41 FGLYALQHRGQEAAgiAVSDGSGVVVYKdlGLVAQVFDEPTLA------------SLRGHLAIGHARYSTTGGSTWENAQPTIRSTsAGTTIALAHNGN 127
                 6667777777776523457888888888666667777766432............37889************************973689999****** PP

    GATase_4 111 lkeykpkl 118
                 l + ++ +
  KIR64552.1 128 LVNTAELQ 135
                 *7754433 PP

>> DUF3700  Aluminium induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     2e-06    0.0061     120     184 ..     169     233 ..     102     257 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2e-06
     DUF3700 120 ypadqvvkdleGkfafvlydskaktvfvaldadgsvplyWGiaadgsvvisddl..elvkksCgksf 184
                  +a +v+ +l+G f+fv  d+  +t+++a+d  g  pl  G    g vv s+    ++v +s  + +
  KIR64552.1 169 AAALEVLPQLRGAFSFVFMDE--STLYAARDPHGVRPLVLGRLERGWVVASETAalDIVGASVVREV 233
                 346689************996..689************************99751256666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3709.05
//
Query:       KIR64553.1  [L=384]
Description: phosphoribosylaminoimidazole synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-31  107.4   0.3    1.2e-30  106.8   0.3    1.4  1  AIRS_C    AIR synthase related protein, C-terminal domain
    6.2e-17   62.0   0.2    9.7e-17   61.4   0.2    1.4  1  AIRS      AIR synthase related protein, N-terminal domain


Domain annotation for each model (and alignments):
>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   0.3   1.3e-34   1.2e-30       2     152 ..     208     375 ..     207     379 .. 0.95

  Alignments for each domain:
  == domain 1  score: 106.8 bits;  conditional E-value: 1.3e-34
                 TTEEEEEEETSSCTCCHHHHHHHCHHHCTSHTT.........TSEHHHHHHHHHHHHHHHHHHHH.HTTECEEEE--TTHHHHHHHHHHHTTTEEEEEE CS
      AIRS_C   2 pGdvliltgslGlggagtslkrkileeegldds.........avqlgdvlleptliyvkralaal.kglvkaahDvTgGGLlgalaemapasgvgaeid 90 
                  Gdv+i + s+Gl+++g+sl+r++l  +g+ +          ++ lg++ll+pt+iy+ + l ++ + +v+++++vTgGG+ g+l +++p++ v a+++
  KIR64553.1 208 TGDVVIAMRSSGLHSNGYSLVRHVLLGAGRMRLdvviedfgrQRTLGEELLTPTKIYAQDCLKLIaEAEVRSIAHVTGGGIPGNLVRILPEN-VDAVVN 305
                 6****************************9988*******87777**********************************************8.****** PP

                 CG...THHHHHHHH.....HHHHHHHCSTTTEEEEEEEHGGH.HHHHHHHHHTTCCCEEEEEEEEESSSEE CS
      AIRS_C  91 ld...kvpifdele.....splemllsensGrllvavppeea.davlaileeeglpeaavIGevtakeels 152
                  +     pifd ++     ++ em  ++n+G++++a++++e+ d++la+l+ +g+ +a++ Ge++++ ++ 
  KIR64553.1 306 RStwkPQPIFDLIQskgriEDNEMESTFNMGVGMFAIVSAEDaDRALATLTGRGV-DAWQAGEIIEGTGKV 375
                 *****9**************************99988777777************.8*********98654 PP

>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.2   1.1e-20   9.7e-17       5      94 .]      91     195 ..      41     195 .. 0.89

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 1.1e-20
                 EEEEEEEEE.EECCTC.CCC...HHHHHHHHHHHHHHTTTEEEEEEEEEEEEC.....HHHHHHHHHHHHHHHTT-EEEEEEEEEESS......EEEEE CS
        AIRS   5 vvvttdshnrpvlvep.vhf...iGakavavnlsDlaamGArPlalllslalp.....wleevvrglaeaaeelgvplvgGdtsfsne......ptisv 88 
                 ++ +td++++++++++  +    iG  +va+++ Dl+a+GA+Pl+ll+++a++     +++e+ +g+a++++ +g++l+gG+t+++++      + +s+
  KIR64553.1  91 LASSTDGVGTKLVIAQqLDIhdtIGIDLVAMVVDDLVACGAEPLFLLDYIACGevvpdKVAEIGAGIADGCRYAGCALLGGETAEHPGvlrpdeYDVSA 189
                 47799999999999552333667**************************************************************99999999999*** PP

                 EEEEEE CS
        AIRS  89 tavGlv 94 
                 t vG+v
  KIR64553.1 190 TGVGVV 195
                 ****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2975.12
//
Query:       KIR64554.1  [L=378]
Description: radical SAM protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-15   56.6   0.0    6.6e-15   55.9   0.0    1.4  1  Radical_SAM  Radical SAM superfamily
     0.0016   18.8   0.0     0.0037   17.5   0.0    1.6  2  Fer4_12      4Fe-4S single cluster domain
  ------ inclusion threshold ------
      0.013   15.6   0.0      0.025   14.7   0.0    1.5  1  Fer4_14      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   1.1e-18   6.6e-15       2     146 ..      24     163 ..      23     195 .. 0.85

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 1.1e-18
                  EEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHH..HHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpetvrregrgrslsveeileevkelk..aekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpdeeklerl 97 
                   +t  Cnl+C +C+ p     + + r ++v   ++ + ++   ae g   v+++ggepl+  +++ +++ +     p+++ +v tn+tl+d+ + e l
   KIR64554.1  24 QPTTLCNLDCAYCYLPM----RAVDRRMPVAVAEAVAASVNrwAEAGRFSVVWHGGEPLAAGREHLAALIAPFG--PEVEHHVQTNATLIDDAWCEFL 115
                  67899***********5....66666666666666666655547888999**********88888888888887..9*************77777777 PP

                  HHTT-SEEEEEEBSSSHHHHHHHHT.CTSHHHHHHHHHHHHHHTTSETEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  98 lelgvdrvslgleaaddekvlklmn.rghtfeevlealeklreagikrvv 146
                  +  +  rvs++++ +  +   + ++ +++ ++++++++ +lr++g++  +
   KIR64554.1 116 AAHR-VRVSVSVDGPRGRNGDRVTRaGRPAYDRIVRGVAALRRHGLP-FS 163
                  7766.*************8899999999*****************99.54 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   6.2e-07    0.0037      15     119 ..      29     126 ..      19     140 .. 0.83
   2 ?   -3.7   0.7       2.2   1.3e+04      12      22 ..     319     329 ..     315     332 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6.2e-07
     Fer4_12  15 CnlsCkgCfnketwsfksgkeft.kelleeiiedlkkesiegltllGGEPllpenaeallelvkevkeekpekdiwlytgytleelskkekeellkeid 112
                 Cnl C++C+   ++ +++  ++   e+ +  +++ ++  ++ ++  GGEPl+ + +e l+ l+  +  e     ++ ++ + +++       e+l+ + 
  KIR64554.1  29 CNLDCAYCY-LPMRAVDRRMPVAvAEAVAASVNRWAEAGRFSVVWHGGEPLA-AGREHLAALIAPFGPEVE--HHVQTNATLIDDAW----CEFLAAHR 119
                 *********.667888888888778888888999999999************.9999*****999999887..68999988888874....57787777 PP

     Fer4_12 113 vlvdGkf 119
                 v v++  
  KIR64554.1 120 VRVSVSV 126
                 6666654 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.2
     Fer4_12  12 vsgCnlsCkgC 22 
                 v+ C+ sC+++
  KIR64554.1 319 VEACRASCPYF 329
                 678*****995 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.2e-06     0.025       7      92 ..      28     107 ..      21     129 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.2e-06
     Fer4_14   7 gCnlsCkgCdnketwkselgkpqteelleqilk.dlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekkiwletngtle 92 
                  Cnl C  C+      ++  ++ + e + + ++  +++ +     +v  GGePL     ++l  l+       pe++ +++tn+tl 
  KIR64554.1  28 LCNLDCAYCYLPMRAVDRRMPVAVAEAVAASVNrWAEAGR---FSVVWHGGEPLAA-GREHLAALIAPFG---PEVEHHVQTNATLI 107
                 6*********777777777888888888788842344444...46*********55.5666666666554...44566777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2915.87
//
Query:       KIR64555.1  [L=77]
Description: hypothetical protein TK50_02515 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 533.97
//
Query:       KIR64556.1  [L=71]
Description: hypothetical protein TK50_02520 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-24   84.9   2.1    5.5e-24   84.7   2.1    1.1  1  DUF3073         Protein of unknown function (DUF3073)
  ------ inclusion threshold ------
      0.074   13.2   5.0      0.082   13.0   5.0    1.2  1  Importin_rep_6  Importin repeat 6
       0.34   10.2   3.7       0.38   10.0   3.7    1.0  1  NOA36           NOA36 protein


Domain annotation for each model (and alignments):
>> DUF3073  Protein of unknown function (DUF3073)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   2.1   9.2e-28   5.5e-24       1      57 [.       2      60 ..       2      67 .. 0.80

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 9.2e-28
     DUF3073  1 GRGRqKAKqtKvAReLKYlspetDydaLerELsgkseesdsaddeese..dddedddld 57
                GRGR+KAKqtKvAReLKY+sp+tD++aL+rEL+g+ +++++ dd+ +e  ddd +d++d
  KIR64556.1  2 GRGRAKAKQTKVARELKYHSPNTDLTALQRELAGAGKSNHDFDDDYKEyvDDDDEDHAD 60
                9*******************************999888888877666544444334333 PP

>> Importin_rep_6  Importin repeat 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   5.0   1.4e-05     0.082      45      69 ..      38      62 ..      18      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
  Importin_rep_6 45 kereneddeynedvdddyddytded 69
                    k+ ++ dd+y+e vddd +d++ded
      KIR64556.1 38 KSNHDFDDDYKEYVDDDDEDHADED 62
                    678999******************8 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.7   6.4e-05      0.38     252     297 ..      22      63 ..       2      67 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 6.4e-05
       NOA36 252 edsdydaylkalasgddeddegdedddddddeedddeeeddedeee 297
                  ++d +a ++ la+    + ++++d ddd++e  dd++ed  de+ 
  KIR64556.1  22 PNTDLTALQRELAG----AGKSNHDFDDDYKEYVDDDDEDHADEDP 63 
                 34444444444444....4556667777777777666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 501.75
//
Query:       KIR64557.1  [L=359]
Description: valine dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-26   90.8   0.0    2.3e-25   88.9   0.0    2.0  2  ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation 
    3.1e-15   56.6   1.1    1.9e-10   40.9   1.1    2.2  1  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd
    0.00024   20.5   0.0    0.00047   19.6   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
    0.00083   18.9   0.0       0.15   11.5   0.0    2.8  3  Epimerase        NAD dependent epimerase/dehydratase family
    0.00085   19.5   0.0     0.0014   18.9   0.0    1.3  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
     0.0016   18.6   0.0     0.0039   17.5   0.0    1.6  1  TrkA_N           TrkA-N domain
     0.0097   16.3   0.0      0.022   15.2   0.0    1.6  1  NAD_binding_7    Putative NAD(P)-binding
  ------ inclusion threshold ------
      0.011   15.7   0.3      0.021   14.7   0.3    1.4  1  NAD_binding_10   NAD(P)H-binding
      0.037   14.1   0.0      0.068   13.2   0.0    1.4  1  AdoHcyase_NAD    S-adenosyl-L-homocysteine hydrolase, NAD bin
      0.065   13.4   0.4        2.5    8.3   0.1    2.7  2  Actino_peptide   Ribosomally synthesised peptide in actinomyc


Domain annotation for each model (and alignments):
>> ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0   1.3e-28   2.3e-25       2     129 ..      16     134 ..      15     135 .. 0.94
   2 ?   -2.4   0.0       2.3   4.1e+03     100     120 ..     193     213 ..     185     217 .. 0.75

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 1.3e-28
                      SEEEEEEEEEE-TTSBEEEEEEEEEEEE-TTSSEEEEEEEETT--HH....HHHHHHHHHHHHHHHTTSS-EEEEEEEES-GGGS-HHHHHHHH CS
  ELFV_dehydrog_N   2 ervlqvtvpvkrdnGelevikgyraqhssalgPakGGiRfhpsvnld....evkaLaalmtyKnalvdlpfGGakggvkidpkklseeelerit 91 
                      e+v++++ +   ++G    +++++ ++s+algPa GG+Rf p+++++    +v  L++ m yKnal++l++GG+k+++ +dp +l++e l r++
       KIR64557.1  16 EQVVFCQDT---QTG----LRAIIGIYSTALGPALGGTRFYPYASEEaalaDVLDLSRGMAYKNALAGLDLGGGKAVIWGDPDQLKSEPLLRAY 102
                      566666666...777....99*************************99999******************************************* PP

                      HHHHHHHG.GG-BTTTEEEEBBTTB-HHHHHHHHHHHH CS
  ELFV_dehydrog_N  92 rrfvrelakkfiGpgiDvpApDvgtgaremawladeyk 129
                      +rfv++l++++       +A Dvgt  ++m+++a+e++
       KIR64557.1 103 GRFVESLNGRYY------TACDVGTYVADMDVIARETR 134
                      *********999......****************9986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.3
                      .GG-BTTTEEEEBBTTB-HHH CS
  ELFV_dehydrog_N 100 kkfiGpgiDvpApDvgtgare 120
                      ++++  + +v A Dv   are
       KIR64557.1 193 RHLLDDHAEVVATDVDPRARE 213
                      455677889999999888776 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   1.1   1.1e-13   1.9e-10       1     180 [.     144     299 ..     144     349 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 1.1e-13
                    T--TTTTTHHHHHHHHHHHHHHHHTTTS.-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE-HHHHHHHHHCSSS.STTHSH CS
  ELFV_dehydrog   1 GGsldrpeaTglGvvyyveemlkklkld.slegkrvaisGsGnvgsyaallltelgakvvavsDssGviydpeGldieellelkeerks.vkeykk 94 
                    GG  d    T+ Gv++ ++++++++ +  +l+g+rv + G G vg++  ++l +  a+vva          +          +  + ++ v+  + 
     KIR64557.1 144 GGAGDSSVLTAWGVFQGMRAAAEHVWGApTLNGRRVGVAGLGKVGKHLTRHLLDDHAEVVAT---------D----------VDPRAREwVRANH- 219
                    78888888999999999999999988878999999999999999999999997777777663.........1..........2222222122222. PP

                    HSTSTSEEESHHSHHHHSS-SEEEE-SSTTSB-HHHHTHTHHTT-SEEE-SSSS-B-HHHHH.HHHHTT-EEE-HHHHTTHHHHHHH CS
  ELFV_dehydrog  95 ssekkaeyieneeellelkvdilvPcAtqneideenakalikngvklvvEgANlpttqeAke.ileeagvlvvpdkaaNaGGVtvSs 180
                        ++e ++ +  l++ ++d+  PcA+  ++d + +   ++  +k+v+ +AN  + ++ +e +l ++g+l++pd + NaGGV+  +
     KIR64557.1 220 --P-QVELVDAA-ALVAADIDVYAPCALGGALDDDTVP-ALR--AKVVAGAANNQLAHPGIEkLLADRGILYAPDYVVNAGGVIQVA 299
                    ..2.45666664.788899*******************.667..8*********999888763788999**************8655 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.6e-07   0.00047      30      89 ..     170     231 ..     153     239 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.6e-07
                   SBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH..CHHHHTCEECSHHHHH CS
  2-Hacid_dh_C  30 lgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee..eeeelgvelvsleell 89 
                      +l+g++vG+ GlG++G+++ + l    ++v+a+d+ ++++e  ++++ +velv+  +l+
    KIR64557.1 170 GAPTLNGRRVGVAGLGKVGKHLTRHLLDDHAEVVATDVDPRAREwvRANHPQVELVDAAALV 231
                   456899*********************************99988766777777777766665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.018        33     158     197 ..      24      60 ..      13      94 .. 0.68
   2 !   11.5   0.0   8.4e-05      0.15       8      44 ..     185     229 ..     179     269 .. 0.79
   3 ?   -0.7   0.0      0.43   7.8e+02      64      81 ..     285     302 ..     273     308 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.018
                 HHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHHTTS CS
   Epimerase 158 aqyglnaiilrlfnlyGprngegevsrvipalirkilegk 197
                  q gl+aii+++++  Gp       +r++p++ + ++++ 
  KIR64557.1  24 TQTGLRAIIGIYSTALGPA---LGGTRFYPYASEEAALAD 60 
                 466***************9...889999998888887744 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 8.4e-05
                 SHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........E CS
   Epimerase   8 GfiGsalvkallekgyevigldrlssasntarledl........e 44 
                 G +G++l+++ll+ + ev++ d +++a+++ r ++          
  KIR64557.1 185 GKVGKHLTRHLLDDHAEVVATDVDPRAREWVRANHPqvelvdaaA 229
                 77**********************999999998876443333332 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.43
                 T-SEEEE--S---HHHHH CS
   Epimerase  64 qpdavihlAavggvaass 81 
                 +pd+v+++++v  va+++
  KIR64557.1 285 APDYVVNAGGVIQVADEI 302
                 79******9998888776 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   7.6e-07    0.0014       2      58 ..     179     237 ..     178     264 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 7.6e-07
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT..EEE-SSHHHHHHHCSE CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg..akaaesieelvasldv 58 
                    +g+ GlG+ G+++ ++ll+   +v++ ++++ + e + a++  +++++ ++ ++a++dv
     KIR64557.1 179 VGVAGLGKVGKHLTRHLLDDHAEVVATDVDPRAREWVRANHpqVELVDAAALVAADIDV 237
                    8****************************988877777776777777777777777665 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.1e-06    0.0039       3      49 ..     181     227 ..     179     243 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.1e-06
                 EES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-T CS
      TrkA_N   3 iiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgda 49 
                 ++GlG+vG++l++ L +++ +vv+ d d+++ e +r++  +v   da
  KIR64557.1 181 VAGLGKVGKHLTRHLLDDHAEVVATDVDPRAREWVRANHPQVELVDA 227
                 89***************8878**************999987766665 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.2e-05     0.022       5      67 ..     174     233 ..     171     287 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-05
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvklaeeelekdlegadlvia 67 
                    l+g++v v+G G+v+ +  r+ll+  a+  vva +v + + e v+++  ++ + ++ a+lv a
     KIR64557.1 174 LNGRRVGVAGLGKVGKHLTRHLLDDHAE--VVATDVDPRAREWVRANHPQV-ELVDAAALVAA 233
                    789**********************665..566665566666555554443.22333333322 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.3   1.2e-05     0.021       4      54 ..     185     235 ..     183     239 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.2e-05
                     SHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH.CTTTCEEEE--TT-CCHH CS
  NAD_binding_10   4 GkvGrllvkellargghevtalvRnpeklaele.aeeglevvegdvtdvedl 54 
                     GkvG++l+++ll++ + ev+a   +p   + ++ +++++e+v++ ++ ++d+
      KIR64557.1 185 GKVGKHLTRHLLDD-HAEVVATDVDPRAREWVRaNHPQVELVDAAALVAADI 235
                     9*************.6******99999998887467*******988877765 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.8e-05     0.068      21      57 ..     174     210 ..     159     241 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.8e-05
                    -TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HH CS
  AdoHcyase_NAD  21 laGkvavvaGyGdvGkGcaaslkglGarvivtevdPi 57 
                    l G+ + vaG G vGk  ++ l    a v+ t+vdP 
     KIR64557.1 174 LNGRRVGVAGLGKVGKHLTRHLLDDHAEVVATDVDPR 210
                    68999*******************************6 PP

>> Actino_peptide  Ribosomally synthesised peptide in actinomycetes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.11   2.1e+02       4      18 ..      13      27 ..      10      30 .. 0.86
   2 ?    8.3   0.1    0.0014       2.5       8      31 ..     315     338 ..     310     341 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.11
  Actino_peptide  4 vPvattvlDPdtQta 18
                    + + ++v + dtQt+
      KIR64557.1 13 TGHEQVVFCQDTQTG 27
                    57899*********8 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0014
  Actino_peptide   8 ttvlDPdtQtavvvDrdGqvvemG 31 
                     t  +D ++Q+ + +D  G +++++
      KIR64557.1 315 TRIYDTTRQILRLADDEGVPPAVA 338
                     445***************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2637.91
//
Query:       KIR64558.1  [L=279]
Description: hypothetical protein TK50_02530 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1880.82
//
Query:       KIR64559.1  [L=136]
Description: pyridoxamine 5-phosphate oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-05   24.3   0.0      5e-05   23.4   0.0    1.5  1  Putative_PNPOx   Pyridoxamine 5'-phosphate oxidase
      0.003   17.7   0.0     0.0073   16.4   0.0    1.8  1  DUF2255          Uncharacterized protein conserved in bacteri
     0.0099   15.9   0.1      0.012   15.6   0.1    1.3  1  Pyridox_ox_2     Pyridoxamine 5'-phosphate oxidase
  ------ inclusion threshold ------
      0.074   13.2   0.0      0.086   13.0   0.0    1.3  1  F420H2_quin_red  F420H(2)-dependent quinone reductase


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.1e-08     5e-05       9      84 ..       7      81 ..       2      85 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.1e-08
                    HHHSSEEEEEEEETTSEEEEEEEEEEEETTTTEEEEEEETTSHHHHHHHHH-EEEEEEEETT.GSEEEEEEEEEEEE CS
  Putative_PNPOx  9 laeskavvlATvdedGrPnvspvllkagdgrdgivfatnadsrklrnleenprvallfldde.lgrgvrieGtaelv 84
                    l ++k+v l+T ++dGr   +pv+ +++ +   +   t ads k++++++   v++  +d      g  + G+a + 
      KIR64559.1  7 LGAEKYVLLTTFRKDGRAVPTPVWVVRDGDA--LAAWTVADSGKVKRIRRSGEVTVAPCDVRgRPHGAAVPGRAVIC 81
                    55789*********************99999..999999******************99998888888888888765 PP

>> DUF2255  Uncharacterized protein conserved in bacteria (DUF2255)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.6e-06    0.0073       2      43 ..       4      42 ..       3     106 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.6e-06
     DUF2255  2 lekiaaadeleiaplredgtlrkpttiWvVrvdddlyvrsan 43
                l++++a++ + ++++r+dg    pt++WvVr++d l    + 
  KIR64559.1  4 LDRLGAEKYVLLTTFRKDG-RAVPTPVWVVRDGDALAA--WT 42
                8999***************.5679**********9864..43 PP

>> Pyridox_ox_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   2.7e-06     0.012      18     108 ..      17      97 ..       2     128 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.7e-06
                   EEEETTEEEEEEEEEEEETTEEEEEEETTSHCCHCCCT--ECEEEEEEEEEEE-SEGGEEEEEEEEEEEEEEEE--HHHHHHHCCCHHHHH CS
  Pyridox_ox_2  18 afvddgepvilPvnyvvdgdslyfhgakgsrlaaalrgapvcvvvtevdglvlarsfnslnyrSVvvrGraeevtdeeekaealellveki 108
                    f +dg+ v +Pv +v+dgd+l   +   s +++ +r +  +v+v+  d     r         + v Gra    d+++ ++++ell +k+
    KIR64559.1  17 TFRKDGRAVPTPVWVVRDGDALAAWTVADSGKVKRIR-RSGEVTVAPCDV--RGRP-----H-GAAVPGRAVIC-DPAQTRRIRELLKQKY 97 
                   4667999*****************9988888888888.346666666554..2244.....5.9**********.**********999888 PP

>> F420H2_quin_red  F420H(2)-dependent quinone reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.9e-05     0.086      23      59 ..       9      47 ..       2      96 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.9e-05
                     ---EEEEEE-TTT-SEEEEEEEEEEETTEE..EEE-SGG CS
  F420H2_quin_red 23 vpvllLtttGrktgkprktplgfvrdgdsy..lvvaskg 59
                     ++  +L tt rk g++  tp+  vrdgd++  + va+ g
       KIR64559.1  9 AEKYVLLTTFRKDGRAVPTPVWVVRDGDALaaWTVADSG 47
                     4556777888******************87447788877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 972.61
//
Query:       KIR64560.1  [L=259]
Description: methyltransferase type 11 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-06   28.5   0.0    3.2e-06   27.7   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    7.2e-06   26.6   0.0    1.3e-05   25.7   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
      0.001   18.7   0.2     0.0018   17.9   0.2    1.4  1  MetW             Methionine biosynthesis protein MetW
     0.0011   18.9   0.0     0.0016   18.3   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.023   15.4   0.0      0.044   14.5   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
      0.062   13.1   0.0       0.11   12.3   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
      0.062   12.8   0.0       0.09   12.3   0.0    1.2  1  MTS              Methyltransferase small domain
       0.18   11.2   0.0       0.23   10.8   0.0    1.2  1  TehB             Tellurite resistance protein TehB


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.4e-09   3.2e-06       2      96 ..      81     170 ..      80     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.4e-09
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEEST.GGGSSHHHH.HHHHHHHHHHE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssga.lhhlsdedl.ekalkeiarvL 93 
                      Ld+G G Gr++l l++r+    vtg+D s ++l+ +r+r        ++v+g +++   + +++D  ++ g+ l +++ +d+ +++l+ +a + 
       KIR64560.1  81 LDVGVGAGRIALLLQERG--VPVTGLDTSLGALKVCRRRG-----VRDLVHGTVDEHVADGRRYDTFLLLGNnLGLIEGRDRaPAFLAALAALA 167
                      9****************5..9*******************.....45799999999999999****9999999999887766256777777777 PP

                      EEE CS
  Methyltransf_25  94 kpg 96 
                      +pg
       KIR64560.1 168 RPG 170
                      776 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   5.9e-09   1.3e-05       1      54 [.      81     129 ..      81     175 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 5.9e-09
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaek 54 
                      LdvG+G+Gr+a  l++rg  v+g+D+s  +lk+++++++++      v++++ +
       KIR64560.1  81 LDVGVGAGRIALLLQERGVPVTGLDTSLGALKVCRRRGVRDL-----VHGTVDE 129
                      8*************************************9987.....4555444 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   8.1e-07    0.0018      14      69 ..      77     132 ..      68     147 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 8.1e-07
        MetW  14 gsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGls.viqgdldkdle 69 
                 + + ld+G G G +  ll+e ++v   Gl+++  +++ c  +G+  +++g +d+ ++
  KIR64560.1  77 RGETLDVGVGAGRIALLLQE-RGVPVTGLDTSLGALKVCRRRGVRdLVHGTVDEHVA 132
                 5678*********9999976.***********************6489999998764 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     7e-07    0.0016      16      59 ..      72     113 ..      57     198 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7e-07
  Methyltransf_23  16 llpklraggrvLdiGcGtGillevlrengfsvtgvDlspeavei 59 
                      ++  +r +g+ Ld+G G G+ + +l+e+g+ vtg D s  a + 
       KIR64560.1  72 AV--DRVRGETLDVGVGAGRIALLLQERGVPVTGLDTSLGALKV 113
                      44..7899*****************************9765544 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     2e-05     0.044       1      98 [.      81     172 ..      81     173 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2e-05
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvas.nvlhhl..kdir.evldnir 90 
                      L++G G G+++  l e+  ++ +tg+D s  a+     k  +r++ +  +    +++++  dg   +D+ +++ n l  +  +d++ ++l+ ++
       KIR64560.1  81 LDVGVGAGRIALLLQER--GVPVTGLDTSLGAL-----KVCRRRGVRDLVHGTVDEHVA--DG-RRYDTFLLLgNNLGLIegRDRApAFLAALA 164
                      8****************..**************.....555555433333333333333..33.39**98877688888899555559999999 PP

  Methyltransf_12  91 klLkpgGr 98 
                      +l +pg++
       KIR64560.1 165 ALARPGAQ 172
                      99999987 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.9e-05      0.11       6      47 ..      79     117 ..      75     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.9e-05
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielAren 47 
                      + lD+G G+G++++ l e+  p   v+G+D s  a++++r +
       KIR64560.1  79 ETLDVGVGAGRIALLLQERGVP---VTGLDTSLGALKVCRRR 117
                      579**************88555...************99975 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     4e-05      0.09      31      74 ..      76     117 ..      70     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4e-05
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHH CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesaken 74 
                  +g+ lD+G GaG +++ l+++     vt +d +  Al+++++ 
  KIR64560.1  76 VRGETLDVGVGAGRIALLLQERGVP--VTGLDTSLGALKVCRRR 117
                 57889************99997665..9***********99976 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0001      0.23      32      64 ..      78     110 ..      70     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
                 -EEEEES-TTSHHHHHHHHTT-EEEEEES-HHH CS
        TehB  32 gkvldlgcgqgrnslylsllgydvtawdknens 64 
                 g +ld+g g gr +l l+  g  vt +d    +
  KIR64560.1  78 GETLDVGVGAGRIALLLQERGVPVTGLDTSLGA 110
                 789***********************9976554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1864.16
//
Query:       KIR64561.1  [L=95]
Description: hypothetical protein TK50_02550 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00079   18.8  21.8      0.009   15.5   0.7    4.8  5  EF-hand_5        EF hand
  ------ inclusion threshold ------
      0.044   13.3  18.9       0.19   11.3   1.5    4.8  5  EF-hand_1        EF hand
       0.06   13.2   0.1      0.081   12.8   0.1    1.3  1  HA1              Hemagglutinin I
      0.091   13.4  24.2       0.65   10.6   0.9    4.5  4  VCBS             Repeat domain in Vibrio, Colwellia, Bradyrhi
      0.094   12.4   0.5        2.1    8.1   0.0    2.1  2  N_formyltrans_C  N-formyltransferase dimerization C-terminal 
        0.1   12.3  16.3       0.34   10.6   2.3    2.7  2  TSP_3            Thrombospondin type 3 repeat
        1.2    9.0  14.8       0.56   10.1   0.7    3.9  4  EF-hand_8        EF-hand domain pair
        2.2    7.6   5.0        5.3    6.4   1.9    2.3  2  TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal reg
        3.5    7.8  15.3       0.36   10.9   0.9    4.4  5  EF-hand_6        EF-hand domain
        4.5    7.8   9.6         12    6.4   1.0    3.8  4  EF-hand_7        EF-hand domain pair
        7.4    6.8  29.2       0.72   10.0   1.7    4.8  5  FG-GAP           FG-GAP repeat


Domain annotation for each model (and alignments):
>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.3    0.0015       2.4       7      15 ..      26      34 ..      22      36 .. 0.87
   2 !    6.8   0.4     0.003       4.9       8      15 ..      40      47 ..      39      47 .. 0.90
   3 !   15.5   0.7   5.5e-06     0.009       7      18 ..      52      63 ..      48      64 .. 0.92
   4 ?    2.4   0.1     0.076   1.2e+02       8      15 ..      66      73 ..      65      73 .. 0.86
   5 ?   -0.8   0.4      0.78   1.3e+03      10      14 ..      78      82 ..      78      84 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0015
                HH-SS-SSC CS
   EF-hand_5  7 aiDlNgDGk 15
                ++D+N+DGk
  KIR64561.1 26 RADTNNDGK 34
                69******8 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.003
                H-SS-SSC CS
   EF-hand_5  8 iDlNgDGk 15
                +D++gDG+
  KIR64561.1 40 VDTDGDGR 47
                7******7 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 5.5e-06
                HH-SS-SSCE-H CS
   EF-hand_5  7 aiDlNgDGkIsk 18
                ++D++gDGk+++
  KIR64561.1 52 QFDTDGDGKVDI 63
                8*********96 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.076
                H-SS-SSC CS
   EF-hand_5  8 iDlNgDGk 15
                +Dl+ DG+
  KIR64561.1 66 VDLDEDGT 73
                8******6 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.78
                SS-SS CS
   EF-hand_5 10 lNgDG 14
                ++gDG
  KIR64561.1 78 VDGDG 82
                599*9 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.015        25       9      16 ..      27      34 ..      25      34 .. 0.89
   2 ?    5.6   0.9    0.0083        14       9      18 ..      40      49 ..      38      53 .. 0.79
   3 ?   11.3   1.5   0.00012      0.19       8      19 ..      52      63 ..      50      64 .. 0.90
   4 ?    2.2   0.1     0.096   1.6e+02       7      16 ..      64      73 ..      63      73 .. 0.82
   5 ?   -0.3   0.0      0.61     1e+03      11      17 ..      78      84 ..      78      89 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.015
                HTTTSSSE CS
   EF-hand_1  9 fDkDgdGk 16
                +D+++dGk
  KIR64561.1 27 ADTNNDGK 34
                8******7 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0083
                HTTTSSSEEE CS
   EF-hand_1  9 fDkDgdGkId 18
                +D+DgdG+ d
  KIR64561.1 40 VDTDGDGRAD 49
                8******865 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00012
                HHTTTSSSEEEH CS
   EF-hand_1  8 efDkDgdGkIdf 19
                 fD+DgdGk+d+
  KIR64561.1 52 QFDTDGDGKVDI 63
                59********96 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.096
                HHHTTTSSSE CS
   EF-hand_1  7 refDkDgdGk 16
                 ++D D dG+
  KIR64561.1 64 TMVDLDEDGT 73
                5899**9996 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 0.61
                TTSSSEE CS
   EF-hand_1 11 kDgdGkI 17
                +DgdG +
  KIR64561.1 78 VDGDGGL 84
                59**976 PP

>> HA1  Hemagglutinin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     5e-05     0.081      48      78 ..      36      67 ..       9      71 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5e-05
         HA1 48 qswavgvn.dgvnphfqlgyegggkiditlrs 78
                + w v  + dg    fq+  +g gk+dit+  
  KIR64561.1 36 DVWVVDTDgDGRADLFQFDTDGDGKVDITMVD 67
                578887654999*****************865 PP

>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.6    0.0027       4.5      49      61 .]      27      39 ..       7      39 .. 0.79
   2 ?   10.6   0.9    0.0004      0.65      47      60 ..      38      51 ..      37      52 .. 0.87
   3 ?    6.2   0.8    0.0099        16      50      59 ..      54      63 ..      51      65 .. 0.76
   4 ?    7.7   0.7    0.0032       5.2      45      60 ..      62      77 ..      59      78 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0027
        VCBS 49 gDlDgDGdlDllv 61
                +D ++DG++D+ v
  KIR64561.1 27 ADTNNDGKTDVWV 39
                7889999999865 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0004
        VCBS 47 avgDlDgDGdlDll 60
                 v+D DgDG++Dl+
  KIR64561.1 38 WVVDTDGDGRADLF 51
                68999******997 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0099
        VCBS 50 DlDgDGdlDl 59
                D DgDG+ D+
  KIR64561.1 54 DTDGDGKVDI 63
                7788888887 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0032
        VCBS 45 gvavgDlDgDGdlDll 60
                 ++++DlD DG +D +
  KIR64561.1 62 DITMVDLDEDGTPDEV 77
                5899*********955 PP

>> N_formyltrans_C  N-formyltransferase dimerization C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0013       2.1      11      37 ..      11      39 ..       6      45 .. 0.71
   2 ?    2.7   0.1     0.061     1e+02       5      21 ..      63      79 ..      61      80 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0013
                     T-EEEHH..HHHHHHHHT--TT---EEEE CS
  N_formyltrans_C 11 dkkvtlr..ElidlLRAltfgpyknAyfi 37
                     +++v  r  E +dlLRA t ++ k    +
       KIR64561.1 11 NETVETRgdERVDLLRADTNNDGKTDVWV 39
                     66666665599********8887655554 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.061
                     HHB--TT-EEEHHHHHH CS
  N_formyltrans_C  5 lceidLdkkvtlrElid 21
                     +  +dLd+  t  E++d
       KIR64561.1 63 ITMVDLDEDGTPDEVVD 79
                     5678**********999 PP

>> TSP_3  Thrombospondin type 3 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.3   0.00021      0.34       2      24 ..      28      50 ..      27      51 .. 0.93
   2 ?    8.2   4.8    0.0012       1.9       2      24 ..      54      76 ..      53      80 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00021
       TSP_3  2 DaDsDgvGDaCdkDfDnDgvqdd 24
                D+++Dg+ D+   D+D+Dg+ d+
  KIR64561.1 28 DTNNDGKTDVWVVDTDGDGRADL 50
                9******************9985 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0012
       TSP_3  2 DaDsDgvGDaCdkDfDnDgvqdd 24
                D+D+Dg+ D+   D D+Dg +d 
  KIR64561.1 54 DTDGDGKVDITMVDLDEDGTPDE 76
                9********************96 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2     0.099   1.6e+02      35      42 ..      27      34 ..      16      36 .. 0.91
   2 ?    5.4   0.3      0.01        17      32      42 ..      37      47 ..      37      51 .. 0.87
   3 ?   10.1   0.7   0.00034      0.56      33      44 ..      51      62 ..      50      66 .. 0.85
   4 ?   -0.5   0.1       0.7   1.1e+03      35      42 ..      66      73 ..      63      73 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.099
   EF-hand_8 35 fDtdgdGk 42
                +Dt++dGk
  KIR64561.1 27 ADTNNDGK 34
                7******7 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.01
   EF-hand_8 32 frefDtdgdGk 42
                ++ +DtdgdG+
  KIR64561.1 37 VWVVDTDGDGR 47
                589*******6 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00034
   EF-hand_8 33 refDtdgdGkis 44
                  fDtdgdGk++
  KIR64561.1 51 FQFDTDGDGKVD 62
                57*********8 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.7
   EF-hand_8 35 fDtdgdGk 42
                +D+d+dG+
  KIR64561.1 66 VDLDEDGT 73
                79999995 PP

>> TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   1.9    0.0033       5.3      21      46 ..      28      52 ..       5      66 .. 0.71
   2 ?    3.0   0.5     0.036        59      28      45 ..      60      77 ..      52      82 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0033
  TcdB_toxin_midN 21 gtstsvedtnlslaDldGdGladlvl 46
                     +t  +  +t++ ++D dGdG adl  
       KIR64561.1 28 DT-NNDGKTDVWVVDTDGDGRADLFQ 52
                     44.445578999***********765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.036
  TcdB_toxin_midN 28 dtnlslaDldGdGladlv 45
                     +++++++Dld dG++d v
       KIR64561.1 60 KVDITMVDLDEDGTPDEV 77
                     466778888888888765 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.25     4e+02      10      16 ..      28      34 ..      25      34 .. 0.88
   2 ?    3.2   0.7     0.066   1.1e+02      10      21 ..      41      52 ..      39      53 .. 0.79
   3 ?   10.9   0.9   0.00022      0.36       8      19 ..      52      63 ..      50      66 .. 0.91
   4 ?    0.1   0.1      0.64     1e+03       8      16 ..      65      73 ..      63      76 .. 0.79
   5 ?   -0.4   0.0      0.94   1.5e+03      12      22 ..      79      89 ..      78      90 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.25
   EF-hand_6 10 DkdgdGk 16
                D+++dGk
  KIR64561.1 28 DTNNDGK 34
                9*****7 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.066
   EF-hand_6 10 DkdgdGkidaeE 21
                D+dgdG  d  +
  KIR64561.1 41 DTDGDGRADLFQ 52
                9*****877666 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00022
   EF-hand_6  8 lfDkdgdGkida 19
                +fD+dgdGk+d+
  KIR64561.1 52 QFDTDGDGKVDI 63
                69********97 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.64
   EF-hand_6  8 lfDkdgdGk 16
                + D d dG+
  KIR64561.1 65 MVDLDEDGT 73
                679999997 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.94
   EF-hand_6 12 dgdGkidaeEl 22
                dgdG + +e+l
  KIR64561.1 79 DGDGGLPPEQL 89
                9***9888776 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   2.8      0.33   5.3e+02      54      60 ..      28      34 ..       4      50 .. 0.65
   2 ?    6.4   1.0    0.0073        12      10      21 ..      52      63 ..      48      70 .. 0.73
   3 ?   -0.7   0.0       1.3     2e+03      52      59 ..      65      72 ..      63      73 .. 0.75
   4 ?   -2.1   0.0       3.4   5.6e+03      14      25 ..      79      90 ..      78      94 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.33
   EF-hand_7 54 DtdkdGv 60
                Dt++dG+
  KIR64561.1 28 DTNNDGK 34
                5555553 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0073
   EF-hand_7 10 elDtdgdgyldk 21
                ++Dtdgdg++d 
  KIR64561.1 52 QFDTDGDGKVDI 63
                567777777765 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.3
   EF-hand_7 52 efDtdkdG 59
                ++D+d dG
  KIR64561.1 65 MVDLDEDG 72
                78889888 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 3.4
   EF-hand_7 14 dgdgyldkeell 25
                dgdg l +e+l 
  KIR64561.1 79 DGDGGLPPEQLP 90
                899999888876 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.3    0.0021       3.4       8      18 ..      27      37 ..      27      37 .. 0.93
   2 ?   10.0   1.7   0.00044      0.72       7      18 ..      39      50 ..      39      51 .. 0.93
   3 ?    5.1   0.8     0.016        26       9      18 ..      54      63 ..      53      66 .. 0.89
   4 ?    3.2   0.9     0.059        97       8      17 ..      66      75 ..      62      75 .. 0.87
   5 ?   -1.5   1.1       1.8   2.9e+03      10      14 ..      78      82 ..      78      82 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0021
                ESTSSSSS-EE CS
      FG-GAP  8 gDvNGDGyaDL 18
                +D N+DG++D+
  KIR64561.1 27 ADTNNDGKTDV 37
                799*******8 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00044
                EESTSSSSS-EE CS
      FG-GAP  7 vgDvNGDGyaDL 18
                v+D +GDG aDL
  KIR64561.1 39 VVDTDGDGRADL 50
                79*********9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.016
                STSSSSS-EE CS
      FG-GAP  9 DvNGDGyaDL 18
                D +GDG+ D+
  KIR64561.1 54 DTDGDGKVDI 63
                89*****998 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.059
                ESTSSSSS-E CS
      FG-GAP  8 gDvNGDGyaD 17
                +D++ DG +D
  KIR64561.1 66 VDLDEDGTPD 75
                8******999 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 1.8
                TSSSS CS
      FG-GAP 10 vNGDG 14
                v+GDG
  KIR64561.1 78 VDGDG 82
                8***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 660.78
//
Query:       KIR64562.1  [L=285]
Description: 3-hydroxybutyryl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-52  176.9   0.0    4.8e-52  176.5   0.0    1.2  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
    5.5e-31  107.1   0.0    1.3e-30  105.9   0.0    1.6  1  3HCDH           3-hydroxyacyl-CoA dehydrogenase, C-terminal d
    0.00021   21.0   0.8    0.00028   20.6   0.8    1.3  1  DAO             FAD dependent oxidoreductase
     0.0021   17.3   0.9     0.0032   16.8   0.9    1.2  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.012   16.2   0.6      0.023   15.2   0.6    1.5  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      0.022   15.0   2.0      0.056   13.7   2.0    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      0.037   13.3   0.7      0.057   12.7   0.7    1.4  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.063   13.3   0.3        0.1   12.7   0.3    1.3  1  AdoHcyase_NAD   S-adenosyl-L-homocysteine hydrolase, NAD bind
       0.16   12.5   1.3       0.61   10.6   0.4    2.1  2  XdhC_C          XdhC Rossmann domain
       0.21   11.5   0.2       0.47   10.4   0.2    1.6  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
       0.73    8.8   2.3       0.95    8.5   2.3    1.1  1  GIDA            Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.5   0.0   2.9e-55   4.8e-52       3     179 ..       6     181 ..       4     182 .. 0.98

  Alignments for each domain:
  == domain 1  score: 176.5 bits;  conditional E-value: 2.9e-55
                 EEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHH.C-SEEEE-S-SSHHHHHHHHHHH CS
     3HCDH_N   3 aviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeav.dadlviEavvEnlelKrkvfael 100
                  v+GaGtmG gia+v+a ag++V lv++++ ++++a +++ + +e++v++gkl+++ ++a  +r++   +l e++ + d+v+Eav+E+l+lKr+v+++ 
  KIR64562.1   6 VVVGAGTMGLGIAYVAAGAGYRVELVEVDPGRATAAGARLGELWERAVQRGKLTADAAAANRERLTLRPSLGEVApEPDVVVEAVPERLDLKRAVLRDA 104
                 59***********************************************************************************************99 PP

                 HCCS-TTSEEEE--SSS-HHHHCCCSSSGGGEEEEEE-SSTTT--EEEEEE-TT--HHHHHHHHHHHHHTT-EEEEECS CS
     3HCDH_N 101 ekiakpdailasnTSslsiselaealkrperviglHFfnPpplmkLvEvvrgekTseetvatvvelakkigktpvvvkd 179
                 +++    a+l snTSs+ i+ela+ l+rper++glHFfnP+  m L+Evv g++T++et+a++v+la ++gk pvvv+d
  KIR64562.1 105 AALR--PALLGSNTSSIAIAELAAGLDRPERFLGLHFFNPVWAMALLEVVVGPATADETTAAAVALAGRLGKDPVVVRD 181
                 8886..79*********************************************************************98 PP

>> 3HCDH  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.0   7.9e-34   1.3e-30       1      97 []     184     279 ..     184     279 .. 0.99

  Alignments for each domain:
  == domain 1  score: 105.9 bits;  conditional E-value: 7.9e-34
                 TTTHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHTTTHGGHH-HHHHHHHHTT--BGGGTBSSSBC CS
       3HCDH   1 GFvvnRvlapllneavrlveegvaspediDaamrlglGlpmGpfelldlvgldvakkilevlaeelgerayapsplleklveagrlgrktgkgfyky 97 
                 GF+++R+ ++l  ea+r+v++gvasp+diD+am lg+ +p+Gp+el+dlvgldv ++i+++l++++g+r +ap+pllek+v +g+lgrk+g+gfy +
  KIR64562.1 184 GFATSRLGVTLGLEAIRMVADGVASPADIDKAMVLGYRHPVGPLELTDLVGLDVRLDIARTLQAAYGDR-FAPPPLLEKMVAEGKLGRKSGQGFYHW 279
                 9*******************************************************************9.999**********************86 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.8   1.7e-07   0.00028       2      46 ..       5      50 ..       4     125 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.7e-07
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEES CS
         DAO  2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhs 46
                 v++G+G +Gl++Ay +a +g  V l+e ++  +  a g+  g l+ 
  KIR64562.1  5 FVVVGAGTMGLGIAYVAAGAGyrVELVEVDPGRA-TAAGARLGELWE 50
                79****************999********95555.444444444433 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.9   1.9e-06    0.0032     144     194 ..       4      54 ..       1      64 [. 0.88

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.9e-06
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaaleeale 194
                  r+vvvG+G  G+ +A ++a +g++v lve  +    a + +l++  e+a++
   KIR64562.1   4 RFVVVGAGTMGLGIAYVAAGAGYRVELVEVDPGRATAAGARLGELWERAVQ 54 
                  79***************************9998888888888888777766 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.6   1.4e-05     0.023       1      32 [.       4      35 ..       4      57 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.4e-05
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversd 32
                + vvvG+G+ gl  A ++a  g +V +ve  +
  KIR64562.1  4 RFVVVGAGTMGLGIAYVAAGAGYRVELVEVDP 35
                579*************************9776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.0   3.4e-05     0.056       1      28 [.       7      34 ..       7      47 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.4e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   +vGaG  Gl +Ay +a ag++v+l+e  
     KIR64562.1  7 VVGAGTMGLGIAYVAAGAGYRVELVEVD 34
                   8***********************9965 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.7   3.5e-05     0.057      29      69 ..       3      43 ..       1      90 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.5e-05
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDvrparleqles 69
                 ++ +v+G+G+ Gl  + +a+g g +V++++v+p r+    +
   KIR64562.1  3 GRFVVVGAGTMGLGIAYVAAGAGYRVELVEVDPGRATAAGA 43
                 789*****************************998877665 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   6.2e-05       0.1      26      62 ..       5      41 ..       1      50 [. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.2e-05
                   EEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHH CS
  AdoHcyase_NAD 26 avvaGyGdvGkGcaaslkglGarvivtevdPicalqa 62
                    vv+G G +G G a    g+G rv + evdP  a  a
     KIR64562.1  5 FVVVGAGTMGLGIAYVAAGAGYRVELVEVDPGRATAA 41
                   4788***************************887655 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00038      0.61       2      45 ..       6      84 ..       5     138 .. 0.60
   2 ?    0.4   0.0      0.55   8.9e+02       6      35 ..     158     187 ..     152     224 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00038
                EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG....................-GGG-TT-SE.......................- CS
      XdhC_C  2 vifGaghvaqalarlaaalgfrvtvvdpreefa....................tkerfpeade.......................t 45
                v++Gag ++  +a +aa +g+rv +v+ ++  a                    t        +                       +
  KIR64562.1  6 VVVGAGTMGLGIAYVAAGAGYRVELVEVDPGRAtaagarlgelweravqrgklT--------AdaaaanrerltlrpslgevapepD 84
                79************************9999656456666666555555444431........0222333345555566666666643 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.55
                 -STTHHHHHHHHHHHTEEEEEEES-GGGG- CS
      XdhC_C   6 aghvaqalarlaaalgfrvtvvdpreefat 35 
                 a++ ++a ++la +lg + +vv++ + fat
  KIR64562.1 158 ADETTAAAVALAGRLGKDPVVVRDMPGFAT 187
                 566788999999999999999999998884 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00029      0.47       3     142 ..       6     164 ..       4     170 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00029
                     EEE--SHHHHHHHHHHHTTT--EEEE-S-H.......HHHHHHHHHSSBTTTBTT...----TTEEEES-HHHHHTT--EEEE---HHH..HHHH CS
  NAD_Gly3P_dh_N   3 avlGaGswGtalAkvlaenghevrlwvree.......elieeineehenvkyLpg...iklpenlvattdlaealkgadiivlvvPsqa..lrev 85 
                      v+GaG  G  +A v a +g +v l   ++       + + e+ e+      L      +  e l+  + l e++ + d++v +vP      r v
      KIR64562.1   6 VVVGAGTMGLGIAYVAAGAGYRVELVEVDPgrataagARLGELWERAVQRGKLTAdaaAANRERLTLRPSLGEVAPEPDVVVEAVPERLdlKRAV 100
                     599**************************99999999666666666666665654222455678**********************864224566 PP

                     HHHHCCC-.......-TT-EEEE---SEET.TTEEHHHHHHHHH-S--EEEEESS--HHHHHTT CS
  NAD_Gly3P_dh_N  86 lkklkgll.......kkkailvsliKGieegtlkllsevieeelkeekvavlsGpslAeEvakg 142
                     l+++++l        +   +++ l+ G+ + +  l  +  + +  ++ + v+ Gp  A E ++ 
      KIR64562.1 101 LRDAAALRpallgsnTSSIAIAELAAGLDRPERFLGLHFFNPVWAMALLEVVVGPATADETTAA 164
                     6665555455566644444555688888777777777788888888888888888888887665 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.3   0.00058      0.95       3      29 ..       6      39 ..       4      64 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00058
                EEE-SSHHHHHHHHHHHHTT--EEEE.......E CS
        GIDA  3 iViGgGhAGceAAlaaarlGakvlLi.......t 29
                +V+G+G  G+  A+ aa +G++v L+       t
  KIR64562.1  6 VVVGAGTMGLGIAYVAAGAGYRVELVevdpgraT 39
                8************************966555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.86
# Mc/sec: 996.21
//
Query:       KIR64563.1  [L=247]
Description: enoyl-CoA hydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-47  160.7   0.0    4.8e-47  160.4   0.0    1.0  1  ECH_1     Enoyl-CoA hydratase/isomerase
    6.2e-26   91.7   0.1    7.7e-26   91.4   0.1    1.1  1  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.4   0.0   5.3e-51   4.8e-47       8     245 ..      14     245 ..      11     247 .] 0.90

  Alignments for each domain:
  == domain 1  score: 160.4 bits;  conditional E-value: 5.3e-51
                 EEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEE.BTSEEEEEB-HHHHHHHHCHHHHHHHCCHHHHHHHHHHSSSEEEEEE-SEEETHHHH CS
       ECH_1   8 viklnrPeavNalsaelltEliqalekleddksvravvLtG.gdkaFaaGadlkemaeeekakqallkeevlelwtklytvpkpviaavnGaaigGGle 105
                 v++l+rPe+ Na++a l++El ++ ++le     r   LtG  +++Fa Gad+ ++ e++ + +al      + + +++ +p+p++aav G a+gGG+e
  KIR64563.1  14 VVTLDRPEKRNAIDADLVAELHAVCAELEAR--PRLLLLTGgTEGIFAGGADIGQLRERG-RLDAL-AAINSAVFARVRALPMPTVAAVDGPALGGGAE 108
                 79***************************99..6889****9****************96.55554.445567899*********************** PP

                 HHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESG.GGHHHHHHHHHHHHHHSCHHHHHHHHH CS
       ECH_1 106 lalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpe.eqlleealelaeklaekspaalrqlke 203
                 la acD++++   a+fg++e++lG+++gag+t +l+  vG+++A+e+l +g+++ a+eal++Glv++vv + ++ll +a  l+ ++a+ s +alr  k 
  KIR64563.1 109 LAYACDLRVCTARAVFGQPEVRLGILAGAGATHRLPALVGEALAKELLFTGRRVDAAEALRIGLVNRVVDDpAELLPTAHGLLDEMAKGSALALRLTKL 207
                 **********************************************************************99**************************9 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHHHHHHHHTCSH CS
       ECH_1 204 alnakledalaeqleaeaklfestfskddikeGlqaflEkrk 245
                 a++a+   +     +++   +  +f+ ++ ++ ++ flE+r 
  KIR64563.1 208 AVDAPPAAHP----HLDLVSQAVLFEDEEKRRRMTDFLERRR 245
                 9998765444....4444444555555555677999999986 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.1   8.6e-30   7.7e-26       3     174 ..      14     179 ..      13     238 .. 0.88

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 8.6e-30
                 EEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEETH CS
       ECH_2   3 vitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivmGg 101
                 v+tL+rp++ Na++ ++v +l++   e e+ +  +l++l+g +e  f  G D+ +l+e  + ++     + + + ++ +++  +p p+va +dG ++Gg
  KIR64563.1  14 VVTLDRPEKRNAIDADLVAELHAVCAELEARP--RLLLLTGGTEGIFAGGADIGQLRERGRLDA-----LAAINSAVFARVRALPMPTVAAVDGPALGG 105
                 79*************************98777..6899999999**************999965.....5577788999******************** PP

                 HHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--G CS
       ECH_2 102 GvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvps 174
                 G+ l+  + +rv t r+vf  PE+++G+    G+++ L+ l g +l++ l  TG+r+++a+al +gl + +v++
  KIR64563.1 106 GAELAYACDLRVCTARAVFGQPEVRLGILAGAGATHRLPALVGeALAKELLFTGRRVDAAEALRIGLVNRVVDD 179
                 ****************************************977589************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.49
# Mc/sec: 1501.63
//
Query:       KIR64564.1  [L=447]
Description: branched-chain amino acid ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-40  139.1   7.8    4.1e-38  131.9   1.9    2.1  2  Peripla_BP_6  Periplasmic binding protein
    6.5e-17   61.7   0.0    2.7e-14   53.0   0.0    2.1  2  ANF_receptor  Receptor family ligand binding region
    1.2e-10   41.0   0.0    1.2e-09   37.6   0.0    2.1  2  Peripla_BP_5  Periplasmic binding protein domain


Domain annotation for each model (and alignments):
>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.4   5.3e-05      0.32     238     312 ..      61     129 ..       9     137 .. 0.75
   2 !  131.9   1.9   6.9e-42   4.1e-38       2     216 ..     221     444 ..     220     446 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.3e-05
                   HHHTTEEEEESCSTCCCSHHHHHHHHHHHHHHTTGGC--HHHHHHHHHHHHHHHHHHCCTHCCHHHHHHHHHHS- CS
  Peripla_BP_6 238 eaaegvlavtpyfpdldnpavrafvaayeaayggapppsqfaaggyiaadlllealkaagsltreavraaleslg 312
                   + ++g+ ++tp +     p  +af+++++a  ++     +++a+ y+a+ + + a++ ags++++a+++++ +++
    KIR64564.1  61 DLLDGMKGTTPLT-----PLPEAFKNRLRAIDPKL-GDYLYSAESYDAVVISALAAQLAGSTDPAAIAKQIVGVT 129
                   3477788777755.....55678888888887876.46789999*************************997765 PP

  == domain 2  score: 131.9 bits;  conditional E-value: 6.9e-42
                   EEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEEE CS
  Peripla_BP_6   2 ikiGlltplsGpyassgksllagaqaafeeiNaaGGinGrkielverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvig 98 
                   + +G l p++G++a++ ++l+aga +a++eiNaaGG++G  +++v  Dd+ +p++a e +++ +  dgv +++g+  s++  av++ + ++g+++++
    KIR64564.1 221 LVLGGLLPRTGDLAIAYPPLAAGAALALKEINAAGGVLGEDVRWVDGDDGTNPAVAKETVEKHIA-DGVHVIIGAGASGISRAVLPDVVAAGLVLFS 316
                   568**************************************************************.******************************* PP

                   SS....-HHCCTTSTTEEESS--HHHHHHHHHHHHHHHTTSCEEEEEEESSHHHHHHHHHHHHHHHCCTEE..EEEEEEE-TTH......HHHHHHH CS
  Peripla_BP_6  99 pa....gltgekcspyvfslgpsysaqasalveylakelggkkvalvyadyafgregiaalkaaakaaGge..vvgeepvplgt......tdfsaqv 183
                   p+    glt+ + ++ +f+++p +s q++al++ ++++ g +++alv+  +++g  ++++++a +++aG++   v   ++++++       df+a +
    KIR64564.1 317 PSntdaGLTSVEDKGLYFRTAPPDSLQGRALADVILRD-GPHRIALVARKDSYGEGLQENVRAELERAGIDgdRVKLLTYEPPAdakappLDFTAGA 412
                   9975555666789999*********************7.99******************************99556666666665678889****** PP

                   HHHHTTT-SEEEEESSHHHHHHHHHHHHHTT-S CS
  Peripla_BP_6 184 lqikaagadavllagtgadlaallkaaaeaGld 216
                   ++ik+ gadavl++g+g+  a++++a+a+ G++
    KIR64564.1 413 REIKEYGADAVLVIGFGE-SAQVIRALADSGVQ 444
                   *************99998.99**********97 PP

>> ANF_receptor  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0   0.00054       3.2     227     330 ..      59     157 ..      33     179 .. 0.71
   2 !   53.0   0.0   4.6e-18   2.7e-14       5     149 ..     243     386 ..     239     442 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00054
                   HHHHHTT-EEEEE--B-HHHHHHHHHST--CCCSSSTCCGSTTCCHHHHH...HHHHHHHHHHHHHHHCHH..........SSSHCCB-HHHHCCHH CS
  ANF_receptor 227 gleaaegvlgfrlkdpnspkfsefldkreklsdekqnyenegkeqisyqaalmYdaVyllaeAlnkllrkk..........kpgralscntlkpweg 313
                     ++++g+ g +  +p  + f++ l         ++   ++g + +s+ +   YdaV++ a A++ +++++           +++   c++     +
    KIR64564.1  59 RADLLDGMKGTTPLTPLPEAFKNRL---------RAIDPKLGDYLYSAES---YDAVVISALAAQLAGSTDpaaiakqivgVTNNGERCEK---PAD 140
                   4566888888888888888888888.........6666778888878777...***************99999999996553333334444...555 PP

                   HHHHHHHHHT-EEEETT CS
  ANF_receptor 314 gqkllrylrnvnfeGlt 330
                      l r+ r+++++G++
    KIR64564.1 141 CLRLARNGRDIEYRGVS 157
                   55555666666666654 PP

  == domain 2  score: 53.0 bits;  conditional E-value: 4.6e-18
                   HHHHHHHHHHT-TTSSTTEEEEEEEEE-TT-HHHHHHHHHHHCCCCEEEEEE-SSHHHHHHHHHHHCCTT-EEEESS---GGGG-TTTTTTEEESS- CS
  ANF_receptor   5 AmklAveeinsdpnllpgiklgyeiidtccdfslaleaaldflkgkvvaviGpssssvsdavaslanlfkiPvisygstspelsdknryptflrtvp 101
                    + lA++ein+ +++l+  +++    d+  +++ a+e++ + +++ v ++iG++ s+ s+av     ++ + ++s++ t++ l++ +     +rt+p
    KIR64564.1 243 GAALALKEINAAGGVLGE-DVRWVDGDDGTNPAVAKETVEKHIADGVHVIIGAGASGISRAVLPDVVAAGLVLFSPSNTDAGLTSVEDKGLYFRTAP 338
                   5789************87.66666688889**************77******************************************8888***** PP

                   -CHHHHHHHHHHHHHTT--EEEEEEESSHHHHHHHHHHHHHHHHTT-E CS
  ANF_receptor 102 sdtsqaqAivdilkhfgWkkvaliysdddygesglqaleeeleergic 149
                   +d+ q++A++d++ + g +++al++ +d+yge++ + ++ ele+ gi 
    KIR64564.1 339 PDSLQGRALADVILRDGPHRIALVARKDSYGEGLQENVRAELERAGID 386
                   ****************************************88888764 PP

>> Peripla_BP_5  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.025   1.5e+02     280     311 ..      98     129 ..      77     134 .. 0.87
   2 !   37.6   0.0     2e-13   1.2e-09       4     163 ..     224     385 ..     221     446 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.025
  Peripla_BP_5 280 aayiqvklwaqAvekagstdvekvreallgqe 311
                    +y +v + a A + agstd++++ ++++g++
    KIR64564.1  98 ESYDAVVISALAAQLAGSTDPAAIAKQIVGVT 129
                   5899999*********************9986 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 2e-13
  Peripla_BP_5   4 GvLhSlsGtmaisekslkdaallaieeinaagGvlgrkieavvvdpasdwelfaekaeklieedkvevvfGcwtSasRkavlpvveelnalLfYpvq 100
                   G L  ++G +ai    l  +a la++einaagGvlg+ +  v  d   ++++ +e+ ek i+ d+v+v++G+  S   +avlp v +   +Lf p +
    KIR64564.1 224 GGLLPRTGDLAIAYPPLAAGAALALKEINAAGGVLGEDVRWVDGDDGTNPAVAKETVEKHIA-DGVHVIIGAGASGISRAVLPDVVAAGLVLFSPSN 319
                   678889******************************************************99.9***********9999****99999999999987 PP

  Peripla_BP_5 101 YE.GeEs.sknviYtGaap.nqqaipavdyllselgakrvflvGsdyvypretnrilkallkakgg 163
                    + G  s  ++ +Y   ap +     a++ ++ ++g +r++lv     y     + ++a l++ g+
    KIR64564.1 320 TDaGLTSvEDKGLYFRTAPpDSLQGRALADVILRDGPHRIALVARKDSYGEGLQENVRAELERAGI 385
                   652433212334444444313333333333444445566666666666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2880.27
//
Query:       KIR64565.1  [L=129]
Description: hypothetical protein TK50_02570 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 908.22
//
Query:       KIR64566.1  [L=235]
Description: hypothetical protein TK50_02580 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-16   59.6   0.3    4.4e-16   58.5   0.3    1.7  1  DUF2786   Protein of unknown function (DUF2786)


Domain annotation for each model (and alignments):
>> DUF2786  Protein of unknown function (DUF2786)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.3   2.5e-20   4.4e-16       2      39 ..       5      43 ..       4      44 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 2.5e-20
     DUF2786  2 ilekIrKLLalAes.stneaEAeaAlakAqeLmarynld 39
                +l+k+rKLLa+Ae+ +++++E +a++akA+eL+ary++d
  KIR64566.1  5 MLAKVRKLLAKAEDpACTPEESAAFTAKATELIARYGVD 43
                9*************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1948.30
//
Query:       KIR64567.1  [L=172]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-11   42.3   0.3    9.6e-11   42.0   0.3    1.1  1  AHSA1     Activator of Hsp90 ATPase homolog 1-like protein


Domain annotation for each model (and alignments):
>> AHSA1  Activator of Hsp90 ATPase homolog 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.3   5.4e-15   9.6e-11       2     119 ..      28     161 ..      27     166 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 5.4e-15
                 S-HHHHHHHHH-HHHHHHH......EEEEEEEE--..ST..TE.EEEEEETTTSEEEEEEEEEEEEETTTEEEEEEEEETSET.....EEEEEEEEEEE CS
       AHSA1   2 apperVfraltdpellkrW......ftlteaemdl..rp..Gg.kfrlrdspdgkefgnegeylevvpperlvytwrledepe.....eeestvtiele 84 
                 a++er f+++t +  l+ W      +++++  ++l  +p  Gg  +++  +p+g + ++  ++l+++pp+rlv+ w+   ++       ++s+v++ + 
  KIR64567.1  28 ASAERAFAVFTGA--LTDWwvpeytWSGPAELVELgvEPhaGGmLYEI--GPHGFRADWG-RVLTWDPPRRLVFVWQIGPDRVpvpdpARASEVEVLFL 121
                 899********98..88877*****77777777775544559945555..6888888776.5***************9944446899988********* PP

                 E.ETTEEEEEEEEEEEEHCHHHHHH....HHHHHHHHHHH CS
       AHSA1  85 e.egggTrltlthtglprkqkeeeg....veeGweqsldq 119
                 +  ++ Tr+ ++h+ ++r+ +++eg     ++Gw+++l++
  KIR64567.1 122 PeGPEWTRVEVEHRHFDRHGAAAEGyreaLTAGWHELLTR 161
                 *66777*******9999999999998888999**999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       160  (0.00892409); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1385.73
//
Query:       KIR64568.1  [L=152]
Description: hypothetical protein TK50_02595 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.2   11.5   0.0       0.23   11.3   0.0    1.1  1  SecB      Preprotein translocase subunit SecB


Domain annotation for each model (and alignments):
>> SecB  Preprotein translocase subunit SecB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.3e-05      0.23      67     121 ..      83     140 ..      35     146 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.3e-05
        SecB  67 eektlFlvevkyaGiftien..ipeeqleplll.iecPrilFPyaReivsdlvreggf 121
                 +++ + +ve +    f+ e   +p+++ + +l+ ++  r+++Py+Re+v+++  + g 
  KIR64568.1  83 ADDAAAIVEASIVVQFRAESplVPDHERALALGqTHSHRVMYPYLRELVQSMLARLGV 140
                 566777888888888888866667666665554167789************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1106.72
//
Query:       KIR64569.1  [L=265]
Description: polysaccharide deacetylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-31  108.6   0.0    2.8e-31  108.0   0.0    1.3  1  Polysacc_deac_1  Polysaccharide deacetylase
  ------ inclusion threshold ------
      0.027   14.7   0.0       0.16   12.2   0.0    2.2  2  stn_TNFRSF12A    Tumour necrosis factor receptor stn_TNFRSF12
       0.33   10.9   4.8       0.67    9.9   4.8    1.6  1  DUF3558          Protein of unknown function (DUF3558)


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   4.6e-35   2.8e-31       2     122 ..      76     199 ..      75     201 .. 0.96

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 4.6e-35
                      SHTTSTEEEEEEEESS.CSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--.EGGGSHHHHHHHHHHHHHHHHHHH CS
  Polysacc_deac_1   2 gtkgkksvalTfDdgp.rdntteilpvLkkykvkatffvigglvedypdevremaasGveignHtinhs.nlkrlseeevrreierakdalrka 93 
                      +t+g+k+valTfDdgp + +t++il+ Lk+ ++katf+v+g++v ++p++v ++a++G+++ nH++ h+ +l r   +e+r+++ r+++a+r+a
       KIR64569.1  76 RTTGGKAVALTFDDGPdPAWTPKILDQLKAAGAKATFCVVGTQVRKHPQLVARIAREGHQLCNHSWRHDiDLGRRPVAEIRADLTRTNRAIRAA 169
                      6899************9999*************************************************677999999**************** PP

                      HS-.---EEE-GGGEE-HHHHHHHHHTT.E CS
  Polysacc_deac_1  94 lgr.eprlfryPygsasatvlevarelgfa 122
                        + +++l+r P+g+++ +v++va++lg++
       KIR64569.1 170 APDaKVTLYRQPGGRWTPEVVTVAKQLGMR 199
                      *999************************97 PP

>> stn_TNFRSF12A  Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.7e-05      0.16      10      41 ..       4      35 ..       2      63 .. 0.84
   2 ?   -1.0   0.0      0.31   1.9e+03      41      77 ..     140     177 ..     130     184 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.7e-05
  stn_TNFRSF12A 10 lrllvlGlglallraaaGeqapGaaplsrGss 41
                    r+lvlGl lal+ a  Ge++   +p +  s+
     KIR64569.1  4 RRVLVLGLCLALFLAGCGERTTDRRPGAAASP 35
                   589*****************988887666554 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.31
  stn_TNFRSF12A  41 swsadld.kliklaslpaekrsdlllklaaappasfrl 77 
                    sw  d+d     +a+++a  + +  +  aaap a+  l
     KIR64569.1 140 SWRHDIDlGRRPVAEIRADLTRTNRAIRAAAPDAKVTL 177
                    66667764444556666666777777789999998776 PP

>> DUF3558  Protein of unknown function (DUF3558)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.8   0.00011      0.67       2      37 ..      16      56 ..      15      84 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00011
     DUF3558  2 llaGCssttdGtapaasssassssttsssaapav.....pl 37
                 laGC++ t+  +p+a++s++++++ ++ ++p++     p+
  KIR64569.1 16 FLAGCGERTTDRRPGAAASPATPTAPPAEPTPKPtvapkPT 56
                69****77777745555555555555555555544464433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1889.02
//
Query:       KIR64570.1  [L=319]
Description: MerR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-14   53.2   0.0    3.8e-14   52.5   0.0    1.3  1  MerR_1          MerR HTH family regulatory protein
    2.4e-07   30.4   0.3    6.2e-07   29.1   0.3    1.8  1  MerR            MerR family regulatory protein
    3.4e-07   30.3   0.1    7.4e-07   29.2   0.1    1.6  1  B12-binding     B12 binding domain
    2.3e-05   24.8   0.5    2.3e-05   24.8   0.5    1.9  2  B12-binding_2   B12 binding domain
    0.00038   20.1   0.4      0.013   15.3   0.0    2.6  2  HTH_23          Homeodomain-like domain
     0.0097   15.9   0.2       0.79    9.8   0.0    3.3  3  HTH_29          Winged helix-turn helix
  ------ inclusion threshold ------
      0.016   15.4   6.7       0.19   11.9   0.1    3.2  3  HTH_28          Helix-turn-helix domain
      0.017   15.3   0.0      0.046   13.9   0.0    1.7  1  HTH_17          Helix-turn-helix domain
      0.023   15.0   0.3       0.11   12.8   0.1    2.2  2  HTH_Tnp_1       Transposase
       0.12   12.0   0.0       0.24   11.1   0.0    1.5  1  CENP-B_N        CENP-B N-terminal DNA-binding domain
       0.17   12.3   1.1          1    9.8   0.2    2.4  2  Arm-DNA-bind_3  Arm DNA-binding domain
       0.25   10.8   4.6       0.22   10.9   0.2    2.9  3  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   2.6e-17   3.8e-14       2      66 ..       7      72 ..       6      74 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 2.6e-17
                EHHHHHHHHTS-HHHHHHHHHHTT-S-EE.-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XX CS
      MerR_1  2 sigevakilgvtthtlrywekegllkpkr.teggrryYtdedierLklikyLlkrGltlkgikkll 66
                s g va++lgv + tlr w +++ l p++   g +r+Yt++d++rL+ +++L  +G+t +++++  
  KIR64570.1  7 SAGAVARRLGVAVTTLRTWHQRYGLGPSQhLPGHHRRYTPADLARLEIMRKLTAEGVTPAEAARWA 72
                6799*************************777777*************************998865 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.3   4.1e-10   6.2e-07       3      38 .]       9      44 ..       7      44 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 4.1e-10
                HHHHHHHTTTHHHHHHHHHT.TSSTSEEETTTSSEEE CS
        MerR  3 gevAeltGvsprtLRyYEre.GLipppeRtegGyRlY 38
                g vA+++Gv + tLR ++++ GL  p++  +g +R+Y
  KIR64570.1  9 GAVARRLGVAVTTLRTWHQRyGLG-PSQHLPGHHRRY 44
                89******************6677.***********9 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1     5e-10   7.4e-07       2      90 ..     196     283 ..     195     293 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 5e-10
  B12-binding   2 kvllatvggdlhplGlavlaaalrdagfeVqllganvenedivaairaekpdvvglSalltsqleavkelvellkrirprvkvvvGGah 90 
                  ++ll ++  + h+l l +laaal +ag+  ++lga v+++++v+a+ ++ p +v++ +++ +  ++ ++l+ ll++ r+ + v++ G++
   KIR64570.1 196 RILLSCADEEQHTLPLEALAAALAEAGVAYRMLGARVPAAALVEAVNRTGPAAVVVWSHIRA-TADPAQLTALLASPRRPLLVLAAGPG 283
                  68999************************************************999774443.34444555555555555666666665 PP

>> B12-binding_2  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.5   1.5e-08   2.3e-05       2      73 ..     114     184 ..     113     186 .. 0.94
   2 ?   -2.5   0.1         5   7.5e+03      56      73 ..     208     225 ..     204     226 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.5e-08
  B12-binding_2   2 aerlhwaivhgdkegieelidealaqgsa...avdvlndvllpamkeVGdlfgagelflpqvllsaevmkkavah 73 
                    a+ l++a +++d  +i e i  al    a   +v +++++l p++  +G++ +a    +  ++l ++++ +a+a+
     KIR64570.1 114 ARGLARAAMRLDSVAIGETIAHAL----AtdgVVGTWEGLLRPVLVGIGERHAATAGLIEVEHLVSRCVSEAFAA 184
                    6899********************....5468****************************************997 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5
  B12-binding_2  56 flpqvllsaevmkkavah 73 
                    +lp + l+a+  +++va+
     KIR64570.1 208 TLPLEALAAALAEAGVAY 225
                    566677777777777765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   8.7e-06     0.013      21      45 ..       9      32 ..       3      37 .. 0.84
   2 ?    2.3   0.1      0.11   1.6e+02       5      25 ..      49      70 ..      45      72 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.7e-06
      HTH_23 21 reIAreLgvsrrTvyrwlkryreeG 45
                 ++Ar+Lgv   T++ w++ry   G
  KIR64570.1  9 GAVARRLGVAVTTLRTWHQRY-GLG 32
                579******************.555 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.11
      HTH_23  5 reRlrillllae.GlsvreIAr 25
                + Rl+i++ l   G +++e+Ar
  KIR64570.1 49 LARLEIMRKLTAeGVTPAEAAR 70
                5699999999977********8 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00053      0.79      10      36 ..       4      29 ..       3      50 .. 0.76
   2 ?    2.0   0.0      0.15   2.2e+02       9      21 ..      60      71 ..      51      99 .. 0.75
   3 ?   -1.3   0.0       1.5   2.3e+03      42      62 ..     183     204 ..     172     205 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00053
      HTH_29 10 eGvstvsqiAkllglsrrtvyrwlkrf 36
                e++s    +A++lg+  +t ++w+ r+
  KIR64570.1  4 EALS-AGAVARRLGVAVTTLRTWHQRY 29
                6676.7789*****************7 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.15
      HTH_29  9 aeGvstvsqiAkl 21
                aeGv t++++A++
  KIR64570.1 60 AEGV-TPAEAARW 71
                6777.78888876 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.5
      HTH_29  42 aalld.rrrsgrprnrlseeqe 62 
                 aa  + + ++g  r +ls + e
  KIR64570.1 183 AAVARaSSAPGPARILLSCADE 204
                 6777778889988779999988 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00013      0.19      14      37 ..       7      30 ..       2      43 .. 0.89
   2 ?    6.1   0.3    0.0079        12       2      21 ..      51      71 ..      50      73 .. 0.83
   3 ?   -1.7   0.1       2.3   3.4e+03      11      18 ..     221     228 ..     211     252 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
      HTH_28 14 svreaArelgisrrtvyrWikrye 37
                s+ ++Ar+lg+  +t++ W +ry 
  KIR64570.1  7 SAGAVARRLGVAVTTLRTWHQRYG 30
                7889******************95 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0079
      HTH_28  2 Rleii.kllaaGhsvreaAre 21
                Rlei+ kl a+G++ +eaAr+
  KIR64570.1 51 RLEIMrKLTAEGVTPAEAARW 71
                999**45556899*******8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.3
      HTH_28  11 aGhsvrea 18 
                 aG+++r +
  KIR64570.1 221 AGVAYRML 228
                 35555553 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.1e-05     0.046       3      45 ..       7      51 ..       5      52 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.1e-05
      HTH_17  3 tveEaAelLgvsrstvyrlirrgelpaak..iGrrwriprsdlee 45
                +   +A+ Lgv ++t++ + +r  l +     G ++r++ +dl +
  KIR64570.1  7 SAGAVARRLGVAVTTLRTWHQRYGLGPSQhlPGHHRRYTPADLAR 51
                56679***********************7789999*******987 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   7.6e-05      0.11      27      48 ..       9      30 ..       3      60 .. 0.83
   2 ?   -1.1   0.0       1.6   2.4e+03       5      31 ..      42      70 ..      38      78 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.6e-05
   HTH_Tnp_1 27 sevArrhgvspnqLykWrrqyr 48
                  vArr+gv   +L++W + y 
  KIR64570.1  9 GAVARRLGVAVTTLRTWHQRYG 30
                67****************9993 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
   HTH_Tnp_1  5 rrwsde..fKariVreslepgksvsevAr 31
                rr++++   +++i r    +g++ +e Ar
  KIR64570.1 42 RRYTPAdlARLEIMRKLTAEGVTPAEAAR 70
                56655422456666666666666666666 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00016      0.24      23      43 ..       6      26 ..       2      35 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
                T-HHHHHHHHT--CCHHHHHH CS
    CENP-B_N 23 eSkaelarrfnvpestlsdil 43
                 S +++arr++v  +tl+++ 
  KIR64570.1  6 LSAGAVARRLGVAVTTLRTWH 26
                48899**************95 PP

>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00068         1      20      72 ..      14      70 ..       3      75 .. 0.76
   2 ?   -0.0   0.0      0.77   1.2e+03      40      63 ..     292     315 ..     252     318 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00068
  Arm-DNA-bind_3 20 GLglrvtpsGaktfvlryr......l.Grypavslae.ARkkarelraliaqGiDPaeekk 72
                     Lg+ v  +  +t+  ry       l G++ + ++a+ AR   + +r+l a+G+ Pae+ +
      KIR64570.1 14 RLGVAV--TTLRTWHQRYGlgpsqhLpGHHRRYTPADlAR--LEIMRKLTAEGVTPAEAAR 70
                    79999*..99********9999998689998775555266..6677788888888887654 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.77
  Arm-DNA-bind_3  40 GrypavslaeARkkarelraliaq 63 
                     G    v laeA + a ++r+ ++q
      KIR64570.1 292 GVVRPVDLAEAVSLALAVRDSLDQ 315
                     454338999999999999998877 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00015      0.22      32      51 ..      10      29 ..       7      30 .. 0.95
   2 ?   -0.9   0.2      0.73   1.1e+03      21      35 ..     174     187 ..     170     188 .. 0.79
   3 ?   -1.0   0.0      0.78   1.2e+03      11      25 ..     206     220 ..     206     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
  HTH_Tnp_ISL3 32 avArqlgvSwtTVwrildry 51
                  avAr+lgv  tT++ ++ ry
    KIR64570.1 10 AVARRLGVAVTTLRTWHQRY 29
                  7****************998 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.73
  HTH_Tnp_ISL3  21 lelllesrsvkavAr 35 
                   + ++ +  +++avAr
    KIR64570.1 174 VSRCVSE-AFAAVAR 187
                   5677888.9*****9 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.78
  HTH_Tnp_ISL3  11 riTlrleayilelll 25 
                   ++Tl lea +++l+ 
    KIR64570.1 206 QHTLPLEALAAALAE 220
                   699*******99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2196.83
//
Query:       KIR64571.1  [L=208]
Description: isopentenyl-diphosphate delta-isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-21   77.1   0.2    1.7e-21   76.6   0.2    1.2  1  NUDIX     NUDIX domain
  ------ inclusion threshold ------
       0.11   12.5   0.1        0.5   10.4   0.1    1.9  1  NUDIX_4   NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.2   1.9e-25   1.7e-21       2     130 ..      34     166 ..      33     167 .. 0.90

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 1.9e-25
                 EEEEEEEEEEETTSEEEEEEES..SSSTTT.EE.SSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSGC CS
       NUDIX   2 lrravgvvllnekgevLlvrrs..kkpfpg.We.lPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfleevegel 96 
                 l+ra++v+l  ++g+vLl+rr+  k++fp  W+  ++G+  pgE++ +AA R+l EE+G+ + +l+  g++ y a +++  + e e+++v++++v  +l
  KIR64571.1  34 LHRAFSVLLVAPDGRVLLQRRAavKTRFPLrWAnSCCGHPAPGESLVTAANRRLGEELGVGPVELTEAGVYVYYAEDPATGRVEFEYDHVLRADVPADL 132
                 79********************998888889*88**********999*************99888888999999999999999*********9999999 PP

                 SST.STTTEEEEEEEEHHHHHHHHTHCTHHHHHHH CS
       NUDIX  97 epn.denevsevrwvpleellkeklaaesrkllpw 130
                 +++ d++ev+e+rwv+++ l +++l+ + r + pw
  KIR64571.1 133 PVRpDPAEVAELRWVDPATL-EADLDVDPRAYAPW 166
                 9999****************.66666666666666 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   5.6e-05       0.5       2      96 ..      40     153 ..      39     158 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.6e-05
                 EEEEEECTEEEEEE--TTSSSTT-EE-S........EEE-TTS-HHHHHH...HHHHS-.EEE..........EEEE..EEEEEEETTEEEEEEEEEEE CS
     NUDIX_4   2 vllirddgrvllekRpekgllggLwefP........ggeeegeeleeala...reelgi.eve..........elep..gtvkHvftHfrltltvylvr 76 
                 vll++ dgrvll++R + +     + fP        g + +ge+l +a+     eelg+  ve          + +p  g+v+  + H  l+ +v  ++
  KIR64571.1  40 VLLVAPDGRVLLQRRAAVK-----TRFPlrwansccGHPAPGESLVTAANrrlGEELGVgPVElteagvyvyyAEDPatGRVEFEYDH-VLRADVP-AD 131
                 7888899********9963.....444433333332333667763333323444566663222334444444422335589999**99.7999986.77 PP

                 EE.S..---..EEEEEEGGGGG CS
     NUDIX_4  77 veegeeapa..elrwvtpeele 96 
                 ++ ++++++  elrwv+p+ le
  KIR64571.1 132 LPVRPDPAEvaELRWVDPATLE 153
                 775666555789*****99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1567.89
//
Query:       KIR64572.1  [L=493]
Description: phytoene dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-33  115.0   0.2    8.4e-33  114.3   0.2    1.3  1  Amino_oxidase   Flavin containing amine oxidoreductase
    7.9e-17   61.9   1.9    2.8e-16   60.1   1.9    1.8  1  DAO             FAD dependent oxidoreductase
    8.4e-12   45.2   0.7      2e-11   43.9   0.7    1.6  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      6e-10   38.8   2.1    6.2e-05   22.4   1.1    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      1e-07   32.4   3.1     0.0022   18.5   1.2    2.6  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    3.2e-07   29.8   7.1    1.3e-05   24.5   4.8    2.2  2  FAD_binding_2   FAD binding domain
    6.7e-06   25.1   0.2     0.0023   16.7   0.9    2.1  2  HI0933_like     HI0933-like protein
    1.3e-05   24.7   4.8     0.0004   19.8   4.0    2.2  2  FAD_oxidored    FAD dependent oxidoreductase
    0.00022   20.6   0.7    0.00044   19.6   0.7    1.4  1  Thi4            Thi4 family
     0.0043   16.4   1.8      0.021   14.1   0.8    2.0  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
     0.0048   16.0   3.8      0.073   12.1   2.2    2.6  3  GIDA            Glucose inhibited division protein A
     0.0052   16.1   4.6      0.028   13.7   3.1    2.1  2  FAD_binding_3   FAD binding domain
  ------ inclusion threshold ------
      0.028   13.2   0.0       0.14   10.9   0.0    1.8  2  MCRA            MCRA family
        0.1   11.4   6.3        1.3    7.8   0.3    2.2  2  Trp_halogenase  Tryptophan halogenase
       0.45   10.5   5.6        5.8    6.9   1.1    2.3  2  NAD_binding_9   FAD-NAD(P)-binding
        1.7    7.6   4.8        1.2    8.1   1.4    2.0  2  Lycopene_cycl   Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.2   7.5e-36   8.4e-33       1     451 [.      18     488 ..      18     489 .. 0.76

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 7.5e-36
                    HHHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEETTEEEESS--EEETTTHHHHHHHHHTTCCCCEE..EESCCGCEEEEETTEECC........ CS
  Amino_oxidase   1 laGLaaArqLlsaGfdVtvlEardrvGGRirtvrsdGylielGamwftgagnpllellkelgledsls..lpdpgapkrvlskggref........ 86 
                    l GLa+A +L+  G++VtvlE +  +GGR+     dGy +++G++++t+  + + e l  +g e+ +   l+  ++++r+ + +g           
     KIR64572.1  18 LGGLACALHLAGSGRQVTVLEREAVPGGRAGRLGVDGYEFDTGPTVLTM-PDLIAEALGAVGEELGDWveLMPLDPAYRAYYPDGSTLdvitdttr 112
                    57***********************************************.77777777776666555555888999*********99999666666 PP

                    ..TTEECHH.HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTST CS
  Amino_oxidase  87 ..pgdlspv.paewealleqgalsaellsleeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagd 179
                       ++ s   p+e +++l++++++       e  rl+++ +++ +ld         + +l++ g++++ + +  ++++++   +++  +++++ag 
     KIR64572.1 113 maAEIASVCgPREADGYLRFVDYA------RELWRLERADFIERNLDAPTDLLTGNLLKLLAGGAFRRLQ-TKIEQFFRDPRTQRIFSFQAMYAG- 200
                    643333333566666666655555......55555555555599999999999999999***********.777777777799999999999999. PP

                    TTTCBHHHHTCCCCHHHHHTSCCCEETTHTHHHHHHHHH..TTTTEEEETSEEEEEEEE.ETTCEEEEETTSTEEEESEEEE-S-HHHHHSSEEES CS
  Amino_oxidase 180 pselsaklalpllwelegfggslllprgGlsqlpealae..elrgldirlntrVkeikr.egdgvtvtledgevveaDaVvvTvplgvlkailfsP 272
                      +    la++++ ++ +  +++++prgG++++ + +a   e++g++ir++t V ++++ +g   +v + dge v aD Vv+  +l+v+ +  +  
     KIR64572.1 201 -LAPHDALAIYAVIAYLDSVAGVYFPRGGIHAVSRGMAGaaEKHGVQIRYGTTVARVETaNGRATGVVTADGEFVGADVVVLNPDLPVAYR-DLL- 293
                    .779*******************************************************7666699999*********************3.333. PP

                    CCSHHHHHHHHHSEEEEEEEEEEEESSGG...SGCSTS...E.CE.....CECCCEEETTTEEEEECC..ECCCSTTTEEE.EEEEEEC.HHHHHH CS
  Amino_oxidase 273 plpdekaeairnlgfgsvnkvilefdrkf...wednal...g.qg.....vlvseltttlgeafissd..fpsrappgkgl.vllvyvg.gdaane 352
                      p+ +++      ++s++++++  ++      ++n++   + +g       ++el t++   ++  +   p  ap g +   +l+ v+  d+a+ 
     KIR64572.1 294 --PPTRRRR--LTYSPSCVVLHVGSRQGYekiAHHNIHfgrSwKGtfdevIRRGELMTDPSLLVTNPSrtDPAVAPAGGHTyYVLAPVPnLDRAPF 385
                    ..3233322..2234444444444444333323444434332223555564444444444444433336567777777777677777777777766 PP

                    HTTS-HHHHHHHHHHHHHHHHTGTSSTCSE.........EEEEECCTETTT.SSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGCTTTTTS.H CS
  Amino_oxidase 353 leslsdeelvqavlrdLrklfgeevpepka.........tlvtrWhtdpla.rgsysyvsvgpghedydplakpegdprlffAGehtsreypgt.v 437
                         + +l ++ +++L   +  e ++ +          ++   W ++ +a ++ ++  +   ++  ++p++  + +++++f G+ t    pg+ v
     KIR64572.1 386 E---WRGDLTRRYTDQLVGTLE-ERGYVGFgagievlraVTPAEWAEQGMAaGTPFASAHSLFQTGPFRPSNLHRTLDNVVFVGSGTQ---PGVgV 474
                    6...788888888888887777.4444444555555556************788888888888999****9999**************...***** PP

                    HHHHHHHHHHHHHH CS
  Amino_oxidase 438 egAilSGlraAari 451
                    +  + SG+ aAar+
     KIR64572.1 475 PMVLISGKLAAARV 488
                    ************98 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   1.9   2.5e-19   2.8e-16       1     198 [.      10     281 ..      10     300 .. 0.79

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 2.5e-19
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH.......................................... CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeas.......................................... 55 
                 +vv++G+G  Gl++A++La  g  Vt+le++  +g    gr+++l   g++ +  +                                           
  KIR64572.1  10 RVVVVGAGLGGLACALHLAGSGrqVTVLEREAVPG----GRAGRLGVDGYE-FDTGPtvltmpdliaealgavgeelgdwvelmpldpayrayypdgst 103
                 59****************99999********9999....999998888884.44444568899999999999999999999999999999999999999 PP

                 ...........................HHHHHHHHH.HHHHHHHHHHHSST..TSEEEEEEEEEESSHHHHHHHHHHHHHH.......HHTTT...TE. CS
         DAO  56 ...........................elarlslea.leelreleeelgid..idyrrtGllslaadeeelealdkllall.......leagl...da. 113
                                            ++++ ++e+ + e++++ e+ ++d  +d+    ll l a+   + +l+ ++++        +   +   +a 
  KIR64572.1 104 ldvitdttrmaaeiasvcgpreadgylRFVDYARELwRLERADFIER-NLDapTDLLTGNLLKLLAGG-AFRRLQTKIEQFfrdprtqR---IfsfQAm 197
                 99999999999999999999999976666666666633344555555.55522666667777776655.48888888888776665441...2222333 PP

                 EE.EEHHHHHHHSTTST..TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE CS
         DAO 114 el.ldaeevrelepalp..gllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gendaadavVn 198
                 +  l ++ +++++  ++  + ++++++p +g+   +++ +++a aae++Gv+i++gt+v ++e  +g+++gv  +t+ ge + ad vV+
  KIR64572.1 198 YAgLAPHDALAIYAVIAylDSVAGVYFPRGGI---HAVSRGMAGAAEKHGVQIRYGTTVARVETANGRATGV--VTAdGEFVGADVVVL 281
                 433777778888865336788999********...999************************9999******..566588755588886 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.7   1.8e-14     2e-11       1      54 [.      13      66 ..      13      73 .. 0.95

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 1.8e-14
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEECTS---EEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpgvrvdygahifhg 54
                   +vGaGl+Gl++A +La  g++v++le+   +GGra +  v+g+ +d+g+++++ 
     KIR64572.1 13 VVGAGLGGLACALHLAGSGRQVTVLEREAVPGGRAGRLGVDGYEFDTGPTVLTM 66
                   8************************************************99865 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   1.1   5.5e-08   6.2e-05       2      38 ..      10      45 ..       9      50 .. 0.87
   2 !   15.1   0.0   8.8e-06    0.0098     183     233 ..     230     281 ..     206     282 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 5.5e-08
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclng 38
                 +vvv+G+G +Gla+al+la +g +vt++ +++++++g
   KIR64572.1 10 RVVVVGAGLGGLACALHLAGSGRQVTVL-EREAVPGG 45
                 79**************************.66666655 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 8.8e-06
                  HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCEEEESEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 183 kelsaaleealekeGvevklgtsvkeidgngekle.vvledgeeidadlvvv 233
                  +++s+ ++ a ek+Gv+++ gt+v +++  + +++ vv+ dge + ad vv+
   KIR64572.1 230 HAVSRGMAGAAEKHGVQIRYGTTVARVETANGRATgVVTADGEFVGADVVVL 281
                  5678889999******************99997889*************996 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   1.2     2e-06    0.0022       1      34 [.      10      43 ..      10      49 .. 0.92
   2 !   12.8   0.0   0.00012      0.13      43      80 ..     233     270 ..     230     271 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2e-06
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkl 34
                +vvvvG+G+ gl +A  la  g +Vtv+er+  +
  KIR64572.1 10 RVVVVGAGLGGLACALHLAGSGRQVTVLEREAVP 43
                79****************************8765 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEEET CS
   Pyr_redox  43 skilqeklekngievllntkveeiegsedgvesvklkd 80 
                 s+ ++   ek+g++++++t+v+++e+ +   ++v+++d
  KIR64572.1 233 SRGMAGAAEKHGVQIRYGTTVARVETANGRATGVVTAD 270
                 666777899****************7765599999876 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   4.8   1.2e-08   1.3e-05       2      36 ..      11      45 ..      10      48 .. 0.93
   2 !    5.5   0.0     0.007       7.8     140     180 ..     229     269 ..     217     320 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.2e-08
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36
                   v+V+G+Gl+GLa+Al +a  G++v+v+e e + gg
     KIR64572.1 11 VVVVGAGLGGLACALHLAGSGRQVTVLEREAVPGG 45
                   9****************************998766 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.007
                    HHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEE CS
  FAD_binding_2 140 ghallarlvesarkagvdfqerteadeLivedgrvtGavve 180
                     ha+   ++ +a+k+gv+++  t ++++ + +gr+tG+v +
     KIR64572.1 229 IHAVSRGMAGAAEKHGVQIRYGTTVARVETANGRATGVVTA 269
                    5778888999999*************************987 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.9     2e-06    0.0023       2      36 ..      10      44 ..       9      49 .. 0.92
   2 !    5.7   0.0    0.0047       5.2     110     160 ..     231     281 ..     211     283 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 +v+v+G+G  Gl +A+++a  g++V++le++  +g
   KIR64572.1 10 RVVVVGAGLGGLACALHLAGSGRQVTVLEREAVPG 44
                 69***************************987665 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0047
                  HHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE CS
  HI0933_like 110 divdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvl 160
                   + + +  ++++ gv++r+ t+v++ve+ ++++  v t ++e + ad +vl
   KIR64572.1 231 AVSRGMAGAAEKHGVQIRYGTTVARVETANGRATGVVTADGEFVGADVVVL 281
                  56667778899*********************9*99998888888888886 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   4.0   3.6e-07    0.0004       2      38 ..      11      47 ..      10      61 .. 0.93
   2 ?    3.6   0.0     0.032        35      91     137 ..     231     277 ..     165     280 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.6e-07
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGll 38
                  vvVvG+g++G+a+A+  a +G++v ++e++ v GG +
    KIR64572.1 11 VVVVGAGLGGLACALHLAGSGRQVTVLEREAVPGGRA 47
                  9**********************************86 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.032
  FAD_oxidored  91 avleeml...aeagvtvllntrlvevekegkriesvtveskegrktirAk 137
                   av   m    +++gv++ ++t++ +ve+ ++r ++v++++   ++ + A+
    KIR64572.1 231 AVSRGMAgaaEKHGVQIRYGTTVARVETANGRATGVVTAD---GEFVGAD 277
                   4555566665889***************999******976...5555555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.7     4e-07   0.00044      20      58 ..      11      48 ..       5      59 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4e-07
                EEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTT CS
        Thi4 20 vvivGaGssGLtaayylakkpdlkvailersvspGGGaw 58
                vv+vGaG  GL++a  la + + +v++ler+  pGG a+
  KIR64572.1 11 VVVVGAGLGGLACALHLAGS-GRQVTVLEREAVPGGRAG 48
                9******************9.**************9775 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.8   1.9e-05     0.021       1      32 [.      12      42 ..      12      44 .. 0.93
   2 ?    0.8   0.0      0.22   2.4e+02      89     129 ..     238     280 ..     230     282 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.9e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgni 32
                 +++GaG  Gla+a++l  +g  ++++lE++++
   KIR64572.1 12 VVVGAGLGGLACALHLAGSGR-QVTVLEREAV 42
                 79******************9.7*****9875 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.22
  Pyr_redox_3  89 evaksfelpiklfeeVesvkkedeg..fevetsketyeAkkvi 129
                    a+++ ++i++ ++V +v+ +++    +v+++ e + A+ v+
   KIR64572.1 238 GAAEKHGVQIRYGTTVARVETANGRatGVVTADGEFVGADVVV 280
                  57899999************96543214455555555665555 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   2.2   6.6e-05     0.073       2      28 ..      11      37 ..      10      56 .. 0.90
   2 ?    2.5   0.0     0.055        62     116     146 ..     251     281 ..     230     282 .. 0.84
   3 ?   -2.9   0.0       2.4   2.7e+03     138     171 ..     302     334 ..     298     342 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.6e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLi 28
                v+V+G+G+ G+++Al++a +G +v+ +
  KIR64572.1 11 VVVVGAGLGGLACALHLAGSGRQVTVL 37
                9**********************9877 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.055
                 S-EEEEEECTTEEEEEEETTS-EEEECEEEE CS
        GIDA 116 eeveeliveekkvkgvvtedgetikakavvi 146
                  +v+++++ +++ +gvvt+dge + a++vv+
  KIR64572.1 251 TTVARVETANGRATGVVTADGEFVGADVVVL 281
                 4689999999*****************9997 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.4
                 EEEECEEEE--TT-BT-EEEETTEEEESSCTTC- CS
        GIDA 138 tikakavviatGtflkgkihigekelsaGrlgel 171
                 t++ ++vv+  G+  +g   i +++++ Gr  + 
  KIR64572.1 302 TYSPSCVVLHVGS-RQGYEKIAHHNIHFGRSWKG 334
                 6788899******.99************997655 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   3.1   2.5e-05     0.028       3      34 ..      10      41 ..       8      51 .. 0.89
   2 ?    1.4   0.0      0.13   1.5e+02     106     142 ..     231     267 ..     226     277 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.5e-05
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                    V++VGaG+ Gl  al L+  G +v+++e+ +
     KIR64572.1 10 RVVVVGAGLGGLACALHLAGSGRQVTVLEREA 41
                   599**************************975 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.13
                    HHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEE CS
  FAD_binding_3 106 eleriLvehaeerglqvrfktevesleqdeegvtaev 142
                     + r ++ +ae++g+q+r +t v  +e  +   t +v
     KIR64572.1 231 AVSRGMAGAAEKHGVQIRYGTTVARVETANGRATGVV 267
                    5788999***************997776666655555 PP

>> MCRA  MCRA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.14       4      47 ..      11      50 ..       8      67 .. 0.82
   2 ?   -0.4   0.0      0.34   3.8e+02     217     237 ..     241     261 ..     233     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
                EEEE--SHHHHHHHHHHHHTT---GGGEEEE-SS---------- CS
        MCRA  4 aylvGsGiasLaaAvyLirdakvpgenihileelkvaggsldga 47
                + +vG+G+++La A++L      +g+++++le+++v+gg   + 
  KIR64572.1 11 VVVVGAGLGGLACALHLAG----SGRQVTVLEREAVPGGRAGRL 50
                678**************65....689***********9987655 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.34
                 HHTT-EEE-SEEEEEEEEEEE CS
        MCRA 217 keqgVdfqfntkVtdiefeee 237
                 +++gV+++++t+V  +e+++ 
  KIR64572.1 241 EKHGVQIRYGTTVARVETANG 261
                 689*************99955 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   1.3    0.0034       3.8       1      42 [.      10      48 ..      10      53 .. 0.89
   2 ?    7.8   0.3    0.0012       1.3     159     204 ..     235     280 ..     229     281 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0034
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---SS- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeigtvgvG 42
                    ++v+vG+G  G   A +la  +    +vt++e e+++  + G
      KIR64572.1 10 RVVVVGAGLGGLACALHLAGSG---RQVTVLEREAVPGGRAG 48
                    69*************9999999...67********9977666 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0012
                     HHHHHHHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEE CS
  Trp_halogenase 159 fLrrvaearGvtrvegkvvevqldedgrveslrledgreveadlfi 204
                      +   ae++Gv+++ g+ v  +  ++gr +++ ++dg+ v ad ++
      KIR64572.1 235 GMAGAAEKHGVQIRYGTTVARVETANGRATGVVTADGEFVGADVVV 280
                     56778999**********9999999******************987 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.1    0.0052       5.8       1      40 [.      12      46 ..      12      50 .. 0.77
   2 ?    5.3   0.2     0.016        18     111     151 ..     239     281 ..     230     282 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0052
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsep.gagr 40
                   ++vGaG  Gla++ +L+ +       ++t+ +++   g gr
     KIR64572.1 12 VVVGAGLGGLACALHLAGSG-----RQVTVLEREAVpG-GR 46
                   69**************9984.....6777777744325.55 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.016
  NAD_binding_9 111 lpegvtvevh.raevvdleeradgq.avlladgaslaadaVvL 151
                    + e+  v++   ++v ++e++++++  v++adg+ + ad VvL
     KIR64572.1 239 AAEKHGVQIRyGTTVARVETANGRAtGVVTADGEFVGADVVVL 281
                    4445555554156777888888776469**************8 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.4     0.001       1.2       2      31 ..      11      38 ..      10      49 .. 0.82
   2 ?    0.0   0.1       0.3   3.4e+02     103     136 ..     247     280 ..     231     292 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.001
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlie 31
                   vvv+GaG+ gl+ A +l  a  g +v+++e
     KIR64572.1 11 VVVVGAGLGGLACALHL--AGSGRQVTVLE 38
                   8****************..77777777775 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.3
  Lycopene_cycl 103 klleakvesveeeeageslvvleggrkirarlvv 136
                    +++  +v++ve ++   + vv+++g+ + a +vv
     KIR64572.1 247 IRYGTTVARVETANGRATGVVTADGEFVGADVVV 280
                    4566789999999988888999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 3514.74
//
Query:       KIR64573.1  [L=384]
Description: polyprenyl synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-54  184.1   0.0      3e-54  183.8   0.0    1.1  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.8   0.0   1.7e-58     3e-54       7     253 ..      68     335 ..      63     338 .. 0.87

  Alignments for each domain:
  == domain 1  score: 183.8 bits;  conditional E-value: 1.7e-58
                      HHHHHHHSSS--HHHHHHHHHHHHHSCGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHC................TCHHHHH CS
  polyprenyl_synt   7 aleylveagGKrlRpllvllaaealkeeeeelekaavlawivellhaasLvhDDimDdsetRRGqpcahrl................vGnklAi 84 
                       ++ +v agGKr+Rp++     + ++  +e l  ++ + +++ellh++ LvhDD+mD s+tRRG+p+ahr                 +G+++A+
       KIR64573.1  68 TARDCVLAGGKRVRPTFAYWGWRGVAGGDEPLPAVLPALAALELLHTFALVHDDVMDASDTRRGRPTAHRSaaarhvaaghtgdpdrFGEAVAV 161
                      5566777*******************555589*************************************544455555555566666******* PP

                      HHHHHHHHHHHHHHHHHH...STT.HHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC.SHHHHHHHHHHHTH.HHCHHHHHHHHHHTTHHH..H CS
  polyprenyl_synt  85 ndgdfllarafellaklf...eks.lellelfsevllqtveGqlldleeekdddlskfsleeyleivkyKTa.ylfalpvalaallagasd..e 171
                      ++gd+  ++a +ll +       + l++ + + ++ ++tv Gq+ld+  e  +d ++ sl++ l++ +yKTa y++  p+  +a laga+    
       KIR64573.1 162 LVGDLCMVWADRLLGHATvppA-RlLDVRRCYDQMRVETVAGQYLDVLGE--NDAANWSLDRALRVARYKTAsYTVQRPLLFGATLAGADAdgP 252
                      ***************9998744.359********************9655..5666688*****************************986323 PP

                      HHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HHHHHHHHHHTT.SSHHHHHHHHHHH CS
  polyprenyl_synt 172 elealkdiglelGlaFQiqDDylDlfgdpevlgKpagtDiqegkctlpilkalelaspeqrkvlkeilg.kkaekeedvkeal 253
                        +a++++gl +G+aFQ++DD+l ++gdp+++gKpag+D++ gk t++++ a +la+++qr+ l+++ +   a+++++++e++
       KIR64573.1 253 LTAAYTRYGLAVGEAFQLRDDLLGVYGDPATTGKPAGDDLRTGKPTALLMLARQLATANQRRALERAGRvAAAREVARLAELV 335
                      459999*******************************************************9988887766666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2845.65
//
Query:       KIR64574.1  [L=307]
Description: phytoene synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-71  239.4  10.8    5.7e-71  239.1  10.8    1.1  1  SQS_PSY   Squalene/phytoene synthase


Domain annotation for each model (and alignments):
>> SQS_PSY  Squalene/phytoene synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.1  10.8   3.2e-75   5.7e-71       2     263 .]      17     278 ..      16     278 .. 0.97

  Alignments for each domain:
  == domain 1  score: 239.1 bits;  conditional E-value: 3.2e-75
                 XHH-HHHHHHHTTS-HHHHHHHHHHHHHHHHHT-.-----..........------------..---------THHHHHHHHHHHT--HHHHHHHHHHT CS
     SQS_PSY   2 raasksfylaslllppelRdalgalYafcreaddlvDdvs..eplqararldwwrdavdavyaedklkpprepvlralaqlirtyklpkellleliegm 98 
                 r++++++yla++llp  +R++++alY f r+ad++vD ++  +p+++ arld+w +++ a +    + + ++p+l a+ ++i+ ++l+++ +  +++ m
  KIR64574.1  17 RRHGRTYYLATRLLPAWKRRHVHALYGFTRYADEIVDRTEdlPPAERAARLDDWSARFLAGL---GGAQVDDPLLPAVLHTIAVFDLDRADFASFLRSM 112
                 89************************************999999***************999...8999****************************** PP

                 S--SS-..--SHHHHHHHHHHHHHHHHHHHHHHH-S.S-HHHHHHHHHHHHHHHHHHHHHT---SHHHHTT..S-HHHHHHHT--HHHHHHT-....-S CS
     SQS_PSY  99 eadleftryetlddLeeYcyrvagvVgelclrllgarrsdralaeaarrlGkalQltnilRdvpeDaergrvyLPadvlkefgvseedllrkg...vrs 194
                 ++dl+ t y+t+ddL +Y++ +a+v+g ++l++lg ++++ a++e ar+lG+a+Qltn++Rdv+eD++rgr yLP ++l++f+v+++dl+++    +++
  KIR64574.1 113 AMDLTVTAYPTYDDLLDYMEGSAAVIGTMMLPILGSSDPA-AAREPARQLGLAFQLTNFIRDVAEDLARGRTYLPDEDLAKFDVTRDDLFAAAargRAT 210
                 ************************************6655.89***********************************************999998999 PP

                 HHHHHHHHHHHHHHHHHHHHHHHTGGGS.-HHHHHHHHHHHHHHHHHHHHHHHTTT-TTT------HHH CS
     SQS_PSY 195 aelrallrrlaerArelldearellkqlpdrrarpalllavalyrailerieaadydvlsrrvklsllr 263
                 +++r+l++++++rA+ ++++a +++  l  +++++++++a aly  il++++a+dydv++rr+ ++++r
  KIR64574.1 211 PRIRDLIEYEVSRAQTHYEAAAPGVTLL-APASQACMRTAYALYGGILDEVAAQDYDVFTRRALVPRRR 278
                 99**************************.788*******************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2153.48
//
Query:       KIR64575.1  [L=420]
Description: deoxyribodipyrimidine photolyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-58  197.2   2.0    2.8e-58  196.7   2.0    1.1  1  FAD_binding_7   FAD binding domain of DNA photolyase
    2.8e-43  147.8   0.0    4.1e-43  147.2   0.0    1.2  1  DNA_photolyase  DNA photolyase


Domain annotation for each model (and alignments):
>> FAD_binding_7  FAD binding domain of DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.7   2.0   3.2e-62   2.8e-58       1     150 [.     269     415 ..     269     418 .. 0.96

  Alignments for each domain:
  == domain 1  score: 196.7 bits;  conditional E-value: 3.2e-62
                    HHHHHHHHHHHHHHHHCSTTTTTSSTTGCCTT------HH.HHHHHHTT-SS-HHHHHHHHHHHHHS---HHHHHHHHHHHCTTT-B-HHHHHHHH CS
  FAD_binding_7   1 flreLlwrefyyallaaepelaeralkekfdripweeseeekleaWkeGrTGfPlvDAamrqLretGwmhnrlRmivasFltkdLlidWregeevF 96 
                    f+r+L+wr+fy+++ aa+pe+a++a+++   + +w+++ e +l+aW++GrTG+P+vDA+mrqLr++Gwmhnr+R i+a +ltk L +dWreg +vF
     KIR64575.1 269 FVRQLCWRDFYHQVTAAFPEIATKAYRRGATE-DWRHDPE-ALDAWARGRTGLPIVDAGMRQLRAEGWMHNRARLITAGYLTKVLGLDWREGVAVF 362
                    899******************99999888776.8888877.5****************************************************** PP

                    HHH-TT--CCHHHHHHHHHCT-STTS-STT----CCCCHHHCSTT-HHHHHH-G CS
  FAD_binding_7  97 eellvDadlasnagnwqwlagtgadaapafrifnpvkqgkkfDpegeyirrwvp 150
                     ++l+D+d+a+nagnwqw+agtg d++p  r fnpv+q+ +fDp+g+y+rrwv 
     KIR64575.1 363 SRWLLDGDVANNAGNWQWVAGTGNDSRPH-RGFNPVRQAGRFDPDGAYVRRWVK 415
                    ***************************97.**********************95 PP

>> DNA_photolyase  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.2   0.0   4.6e-47   4.1e-43       1     158 [.       5     160 ..       5     169 .. 0.95

  Alignments for each domain:
  == domain 1  score: 147.2 bits;  conditional E-value: 4.6e-47
                     EEEEESS---STT-HHHHHHHCTTSEEEEEEEE-HHHHTCGS-CHHHHHHHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHCTECEEEEE CS
  DNA_photolyase   1 vlvWfrrDlRlhDNpALaaAaasgepvipvfvldpekahklrvgaarvdfllesLadLdeeLrelgirLvvrrgdpadvlpelakelgasavvan 95 
                     ++v+f rDlR+hD+pALa A+a+ ++v+p++vldp+       +++r +fl++sLa+L+++Lre+g++Lv+r+gdp+++  +la e+ga+ + ++
      KIR64575.1   5 AIVLFTRDLRVHDHPALATACAAFDRVVPLYVLDPA-LAGR--SPNRTRFLHQSLAALRDALRERGGDLVIRHGDPVAETIRLAGEVGAEGIGLS 96 
                     589*********************************.5556..9*************************************************** PP

                     ---SHHHHHHHHHHHHHHHHCTSEEEEE--SSSS-HHHHHTTTSSSHSSHHHHHHCHHHHHC.S CS
  DNA_photolyase  96 reyepdererdeavkealrkagievesfddhtlvepgevktkkgkpykvFtpfrkrwlkelk.e 158
                     +++++++r r++++++ ++++ ++++ f + t+v+pg v+  +g++y+vFtp++++w+  l  e
      KIR64575.1  97 ADVSRYARTRERRLRAECERHRLHLRLFPGLTIVDPGAVRPAGGDHYRVFTPYFRAWQGALWrE 160
                     *********************************************************9987752 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2887.64
//
Query:       KIR64576.1  [L=366]
Description: carboxylesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-60  203.4   5.5    6.3e-60  203.2   5.5    1.0  1  Beta-lactamase  Beta-lactamase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.2   5.5   3.5e-64   6.3e-60       2     319 ..       9     356 ..       8     364 .. 0.92

  Alignments for each domain:
  == domain 1  score: 203.2 bits;  conditional E-value: 3.5e-64
                     HHHHHHHHHHTTESEEEEEEEETTEEEEEEEE..........EEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTSTTC CS
  Beta-lactamase   2 drlvrelmaqggipGvavavvrdgkvvldkgg..........GvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylPef 86 
                     ++++ +l a g+  G+ +a++ dg++v+d ++           v  ++gg p+++dtl  ++Sv K+++++++l lv++G+ldLddpV++++P  
      KIR64576.1   9 RDCFHDLFAAGRETGAGLAIWYDGTPVVDLVAgsraavppgrSVPPAGGGDPWRPDTLVNVYSVGKPVAGLCLLLLVDRGRLDLDDPVADHWPG- 102
                     6777888888889*******************7777777776558889999*****************************************76. PP

                     TTGGGTTEBHHHHHTTHSSCSSSSTSTTCTSHHHTHHHHHHHHHHSBSSSSTTSCEE-SHHHHH.HHHHHHHHHHTSHHHHHHHHHTTTTTTSTT CS
  Beta-lactamase  87 agpgkgkiTlrdLltHtsGlpdlfasdlleeaaadaaellralatlppkyapGtkwgYsntgyg.llgellekvtgrsleqllreeilrpLgmkd 180
                          ++ T+r++l+Ht+Glp+++ ++ ++  a d++ l++ la+++p+++pGt  g ++++yg l+gel+++v+grs++++l eei+ p  + d
      KIR64576.1 103 ---FRAPATVRQVLSHTAGLPAFPVPRPADVIA-DWDLLCADLAAAEPRWTPGTVAGEHAWTYGhLVGELVRRVDGRSVGRFLAEEIAGP-WRLD 192
                     ...45669***************7777777777.999*****************************************************.9*** PP

                     EESSTTGGGGGGBEEEEEEETCEEECSCETTHHHHC.........................TTTBEEEEHHHHHHHH.....HHHHHCCSSSSHH CS
  Beta-lactamase 181 telgppesgdprdaagytgngpearappanlpaeae.........................gagglistardlarfl.....glalegglllsae 245
                      ++g+ +++++r a +++ ++ ++ +  +  ++ ++                         +a +l +ta+ lar +     g+ l+g +l s+e
      KIR64576.1 193 LGFGLGAADRRRCADLSYADPGWPVRTLGEPGSLRAaalgnpaggldvavlngplwrgaqvPAVNLHATAAGLARCYagllaGGTLDGVRLFSPE 287
                     *****************99999988888888888889*********************************************9999********* PP

                     HHHHHHHHHTSEEEECTTEEEECECSSEEEEECCHTEEEEEEESTEEEEEEEECGGTEEEEEEESBCSSHHHHH CS
  Beta-lactamase 246 tlaqltaklssgttrpagiraglglGwvladktgapgtfghtGggygtyvfvdpeanlvvavltnrdppnedaa 319
                       a++t ++  g++ +   ra++ lG ++++     g++g +G  +g+  ++dp +++v+a+ t r   +++++
      KIR64576.1 288 LVAEATRAQYDGPDLVLDRRACWTLGMQREP----DGSWGMGG-IGGSSAWADPGRGYVFAYATARLADHDRVD 356
                     ******************************8....6779****.*********************999755544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       173  (0.00964917); expected 358.6 (0.02)
Passed bias filter:                      138  (0.00769703); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 2319.85
//
Query:       KIR64577.1  [L=482]
Description: pyridine nucleotide-disulfide oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-43  146.9   2.5    1.3e-42  146.0   2.5    1.4  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    4.4e-26   91.3   0.0    1.1e-25   90.1   0.0    1.7  1  Pyr_redox_dim   Pyridine nucleotide-disulphide oxidoreductase
    4.3e-15   56.1   9.9    1.6e-14   54.2   0.4    2.8  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      5e-06   26.0   0.3     0.0048   16.3   0.0    2.4  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    1.3e-05   25.2   2.8     0.0019   18.1   0.3    2.3  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
  ------ inclusion threshold ------
      0.016   14.3   5.7      0.073   12.1   0.6    2.1  2  GIDA            Glucose inhibited division protein A
      0.024   15.2   1.1      0.085   13.4   0.2    2.3  2  XdhC_C          XdhC Rossmann domain
      0.039   13.2   0.6        1.2    8.4   0.4    2.2  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
        0.1   12.8   5.0        5.5    7.3   0.2    2.7  2  TrkA_N          TrkA-N domain
       0.13   11.6   4.4       0.74    9.1   0.2    2.6  3  ThiF            ThiF family
       0.21   11.2   1.8        2.5    7.7   0.0    2.3  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.44    9.8   8.1      0.087   12.1   0.8    2.3  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
       0.58   10.6   2.5        0.6   10.6   0.2    2.1  2  NAD_binding_7   Putative NAD(P)-binding
       0.85    9.3   4.8         14    5.3   0.1    2.4  2  ApbA            Ketopantoate reductase PanE/ApbA
       0.99    8.4  11.6       0.32   10.0   0.5    2.8  4  Lycopene_cycl   Lycopene cyclase protein
        1.5    7.4   8.1        1.6    7.3   0.4    2.4  3  HI0933_like     HI0933-like protein
        1.9    7.6  11.6      0.055   12.7   0.5    2.2  2  FAD_binding_3   FAD binding domain
        6.5    7.1  10.2       0.33   11.2   1.0    3.4  3  NAD_binding_8   NAD(P)-binding Rossmann-like domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0   2.5   1.3e-45   1.3e-42       2     293 ..       8     319 ..       7     323 .. 0.88

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 1.3e-45
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH........................HHHHCHHHH..CCCC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxx..xxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias........................evvkklnqg..iell 70 
                  dvvv+G G++G ++a +la+ag+ v+ +e    +g+c+++gc++sk + ++a +  +a+                        e +++      +e++
   KIR64577.1   8 DVVVLGLGVGGEEVAGRLAEAGLSVVGIErrlVGGECPYWGCIPSKMMIRAANAVAEARrvaefageadvrpdwapvakrireEATDNWDDRvaVERF 105
                  8*********************************************88887777776767888************99988888444444443226666 PP

                  HCCTCEEEEESCEEEEETEEECTCEEEEEE.SEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  71 lgeevvkidpgkkkvklekkkegdeekiay.dklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgke 167
                  +g ++ ++ +g++ +    +++   + + + + +vl tG +p+ +++pG+a++      ++++ +a++ ++lp +++v GgG+iG+ElA+++a++g+e
   KIR64577.1 106 TG-KGGRFVRGSGALDGPGRVRVGDRVFRArHGIVLGTGTRPFVPPLPGLADT-----PYWTNQQAIEVEELPGSLLVLGGGAIGLELAQVFARFGVE 197
                  66.677777888888888888866677777588*****************444.....58************************************** PP

                  EEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTEEE--TTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 168 vtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelle.eklglelderggivvdefl 264
                  vt++ea  r+l   ++e s+ +++al+++Gv++ ++ +++++d +g+  ++    g e+ a+ ++v +G+r+  + l+ +++g+    ++++ vd+++
   KIR64577.1 198 VTVLEASGRVLAVEEPESSEVAAAALRADGVRIATEVRAERVDHDGRAFTLRAVGGAEFTAERLLVVTGRRAHLDELGlDTVGVDP-GQRFLAVDDRM 294
                  ***********************************************88899*************************999999987.88889****** PP

                  BESSTTEEE-GGGCTECCSS--HHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 265 rtnvpgiyaiGDvaggkggpelaqaAvqq 293
                  r+  +gi+ +GD +   g  + ++ A+ q
   KIR64577.1 295 RV-ADGIWGVGDLT---GEGAFTHIAMYQ 319
                  **.9**********...555555555444 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   1.1e-28   1.1e-25       2     109 ..     371     477 ..     370     478 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 1.1e-28
                    EEEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHTSBS CS
  Pyr_redox_dim   2 ptvvftdpevasvGlteeeAkaagieikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedladtih 97 
                    p+v+ftdpe+++vGlte +A++ gi+++vg +++++++r ++++  +gfvKlvada+ g ++Ga+ vGp  ge++++l va++a++  + l + i 
     KIR64577.1 371 PRVTFTDPEIGAVGLTERQARERGINVQVGVSRLDSSTRGWIHR-GDGFVKLVADADRGVLVGATSVGPAGGEVLSGLVVAVHAEVPLSRLRHMIY 465
                    99****************************************97.8************************************************** PP

                    SSSSTGGGGHCH CS
  Pyr_redox_dim  98 ihPtlsealkea 109
                    ++Pt++ a+++a
     KIR64577.1 466 AYPTFHRAIETA 477
                    ******999987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   3.1     0.035        35       2      31 ..       9      38 ..       8      40 .. 0.94
   2 !   54.2   0.4   1.6e-17   1.6e-14       2      72 ..     175     245 ..     174     251 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.035
                EEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvvers 31
                vvv+G G+ g E+Ag lae g +V  +er+
  KIR64577.1  9 VVVLGLGVGGEEVAGRLAEAGLSVVGIERR 38
                8***********************999986 PP

  == domain 2  score: 54.2 bits;  conditional E-value: 1.6e-17
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedg 72 
                 ++v+GgG iglElA+++a++g +Vtv+e+s ++l ++++e s++ +  l++ g+++ ++ ++e+++++++ 
  KIR64577.1 175 LLVLGGGAIGLELAQVFARFGVEVTVLEASGRVLAVEEPESSEVAAAALRADGVRIATEVRAERVDHDGRA 245
                 79****************************************************************99875 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1     0.003         3      39      68 ..       9      38 ..       3      45 .. 0.91
   2 !   16.3   0.0   4.8e-06    0.0048      23      93 ..     160     226 ..     155     238 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.003
                  EEEES-SHHHHHHHHHHHHTT-EEEEESSS CS
  2-Hacid_dh_C 39 vGiiGlGrIGqavakrlkafgmkviaydrs 68
                  v ++GlG  G++va rl++ g+ v++++r+
    KIR64577.1  9 VVVLGLGVGGEEVAGRLAEAGLSVVGIERR 38
                  889**********************99886 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 4.8e-06
                   CHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-S CS
  2-Hacid_dh_C  23 wksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesD 93 
                   w++++a+  +el g+ + ++G G+IG ++a++++ fg++v++ + s +  +    ++ e  ++ ++  ++D
    KIR64577.1 160 WTNQQAIEVEELPGS-LLVLGGGAIGLELAQVFARFGVEVTVLEASGRVLA---VEEPESSEVAAAALRAD 226
                   677777888888876.7799***********************99988444...33334455555555555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.2    0.0037       3.7       2      30 ..       9      37 ..       8      89 .. 0.93
   2 !   18.1   0.3   1.9e-06    0.0019       4      43 ..     177     216 ..     174     254 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0037
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdi 30
                v v+G G+ G+++a  +a+agl+Vv +++
  KIR64577.1  9 VVVLGLGVGGEEVAGRLAEAGLSVVGIER 37
                89**********************98876 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.9e-06
                 EE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHH CS
     3HCDH_N   4 viGaGtmGagiaavfasagleVvlvdiseealekalekie 43 
                 v+G G +G ++a+vfa+ g+eV++++ s + l+  + + +
  KIR64577.1 177 VLGGGAIGLELAQVFARFGVEVTVLEASGRVLAVEEPESS 216
                 9*************************98777765554444 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   7.3e-05     0.073       1      59 [.       8      68 ..       8      82 .. 0.90
   2 ?    4.8   0.5     0.012        12       3      29 ..     176     202 ..     174     226 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.3e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE..ES-GGGTT--SSSSEEE-TTHHHHHHHHHHH CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi..thkldtiaelsCnpsiggiakgllvrEidal 59
                dv+V+G G  G e A  +a++G++v+ i      +++   +C ps   i +++ v+E +++
  KIR64577.1  8 DVVVLGLGVGGEEVAGRLAEAGLSVVGIerRLVGGECPYWGCIPSKMMIRAANAVAEARRV 68
                79**************************77777899*******************999986 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.012
                 EEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLit 29 
                  V+GgG  G+e A   ar G++v+ + 
  KIR64577.1 176 LVLGGGAIGLELAQVFARFGVEVTVLE 202
                 79*********************9884 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       2.1   2.1e+03       2      30 ..      10      38 ..       9      75 .. 0.74
   2 ?   13.4   0.2   8.5e-05     0.085       1      43 [.     175     217 ..     175     279 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 2.1
                EEE--STTHHHHHHHHHHHTEEEEEEES- CS
      XdhC_C  2 vifGaghvaqalarlaaalgfrvtvvdpr 30
                v++G g  ++++a  +a++g++v+ ++ r
  KIR64577.1 10 VVLGLGVGGEEVAGRLAEAGLSVVGIERR 38
                67777777777777777777777766655 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 8.5e-05
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-S CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefatkerfpead 43 
                 l+++G+g ++ +la++ a++g++vtv+++  ++ ++e+ ++ +
  KIR64577.1 175 LLVLGGGAIGLELAQVFARFGVEVTVLEASGRVLAVEEPESSE 217
                 799*************************999766444444333 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.4    0.0012       1.2       1      30 [.     176     204 ..     175     212 .. 0.89
   2 ?    2.7   0.0     0.062        62      89     134 ..     221     267 ..     206     277 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0012
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkg 30 
                  ++ G+G++Gl+ a  + ++g+ ++++lE  
   KIR64577.1 176 LVLGGGAIGLELAQVFARFGV-EVTVLEAS 204
                  589******************.69***975 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.062
  Pyr_redox_3  89 evaksfelpiklfeeVesvkkedegfevetske.tyeAkkviiAtGe 134
                  +  +   ++i ++ + e+v+++++ f++++  + +++A+++++ tG+
   KIR64577.1 221 AALRADGVRIATEVRAERVDHDGRAFTLRAVGGaEFTAERLLVVTGR 267
                  5566778899999999*************999779********9996 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.9    0.0088       8.8       1      29 [.       9      37 ..       9      39 .. 0.89
   2 ?    7.3   0.2    0.0055       5.5       2      37 ..     176     211 ..     175     240 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0088
                EEEES-SHHHHHHHHHHHHTTEEEEEEES CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidk 29
                ++++GlG  G+++a +L e+g +vv+i++
  KIR64577.1  9 VVVLGLGVGGEEVAGRLAEAGLSVVGIER 37
                79*****************6646****97 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0055
                 EEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHH CS
      TrkA_N   2 iiiGlGrvGrslaeeLse.ggkdvvvidkdeerveel 37 
                 +++G G +G +la+ + + g  +v+v + + ++++  
  KIR64577.1 176 LVLGGGAIGLELAQVFARfGV-EVTVLEASGRVLAVE 211
                 79****************777.5***99998774433 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   1.0     0.058        58      19      43 ..       7      31 ..       1      36 [. 0.87
   2 ?   -3.6   0.0       5.9   5.9e+03     116     129 ..      92     105 ..      91     125 .. 0.82
   3 ?    9.1   0.2   0.00074      0.74      20      43 ..     174     197 ..     161     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.058
                SEEEEE--SHHHHHHHHHHHHHTTT CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 19 skvllvGaGglGsellknLalsGvg 43
                + v+++G+G  G e++  La +G++
  KIR64577.1  7 VDVVVLGLGVGGEEVAGRLAEAGLS 31
                679********************87 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5.9
                 ESSSHHHHHHHHHH CS
                 xxxxxxxxxxxxxx RF
        ThiF 116 alDniearrlvnra 129
                 a+Dn+++r++v r+
  KIR64577.1  92 ATDNWDDRVAVERF 105
                 89999*99999987 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00074
                 EEEEE--SHHHHHHHHHHHHHTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  20 kvllvGaGglGsellknLalsGvg 43 
                 + l++G G++G el++ +a+ Gv+
  KIR64577.1 174 SLLVLGGGAIGLELAQVFARFGVE 197
                 679*******************95 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.6      0.11   1.1e+02       3      29 ..       9      35 ..       7      38 .. 0.91
   2 ?    7.7   0.0    0.0025       2.5       5      32 ..     177     204 ..     174     240 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
                    EEEE--STTHHHHHHHHHHCTSEEEEE CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigv 29
                    ++v+GlG  G   a  lae+g  v+g+
      KIR64577.1  9 VVVLGLGVGGEEVAGRLAEAGLSVVGI 35
                    89*****99999*************98 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0025
                     EE--STTHHHHHHHHHHCTSEEEEE-S- CS
  UDPG_MGDP_dh_N   5 viGlGYvGlvtaavlaeighevigvDid 32 
                     v+G G +Gl  a v+a+ g+ev+++  +
      KIR64577.1 177 VLGGGAIGLELAQVFARFGVEVTVLEAS 204
                     99*********************98765 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   1.2      0.21   2.1e+02      30      60 ..       8      38 ..       4      43 .. 0.89
   2 ?   12.1   0.8   8.8e-05     0.087      28      64 ..     172     208 ..     165     239 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.21
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESS CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvr 60
                  v+v+G Gv G + +   ++ g +V+ ++ r
   KIR64577.1  8 DVVVLGLGVGGEEVAGRLAEAGLSVVGIERR 38
                 69************99999999999988877 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 8.8e-05
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHH CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparl 64 
                  p+  lv+GgG  Gl+ +++ +++g +Vtvl+ + ++l
   KIR64577.1 172 PGSLLVLGGGAIGLELAQVFARFGVEVTVLEASGRVL 208
                  7899**************************9876665 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2       3.1   3.1e+03      10      34 ..       9      33 ..       4      78 .. 0.75
   2 ?   10.6   0.2    0.0006       0.6      10      39 ..     175     204 ..     172     272 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3.1
  NAD_binding_7 10 vlvvGgGevAarkvrklleagakvt 34
                   v+v G G  +++ + +l+eag  v+
     KIR64577.1  9 VVVLGLGVGGEEVAGRLAEAGLSVV 33
                   6777777777777777777777765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0006
  NAD_binding_7  10 vlvvGgGevAarkvrklleagakvtvvape 39 
                     lv GgG ++++ ++ ++++g +vtv+   
     KIR64577.1 175 LLVLGGGAIGLELAQVFARFGVEVTVLEAS 204
                    69************************7554 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   1.2     0.016        15       1      30 [.       9      38 ..       9      40 .. 0.93
   2 ?    5.3   0.1     0.014        14       2      36 ..     176     210 ..     175     238 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.016
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SC CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrs 30
                +++lG+G  G  +a++La+ag  v+ i r+
  KIR64577.1  9 VVVLGLGVGGEEVAGRLAEAGLSVVGIERR 38
                689*********************999886 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.014
                 EEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHH CS
        ApbA   2 ailGaGaiGsllaakLakagadvtlilrsrrleal 36 
                 ++lG GaiG  la   a+ g +vt++  s r+ a+
  KIR64577.1 176 LVLGGGAIGLELAQVFARFGVEVTVLEASGRVLAV 210
                 79**********************99877766665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.6    0.0057       5.7       1      31 [.       8      36 ..       8      65 .. 0.86
   2 ?   -3.4   0.0       3.7   3.7e+03     120     176 ..     103     156 ..      86     165 .. 0.73
   3 ?   10.0   0.5   0.00032      0.32       2      37 ..     175     208 ..     174     222 .. 0.92
   4 ?   -3.8   0.2       4.9   4.8e+03     130     148 ..     332     350 ..     318     356 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0057
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlie 31
                   Dvvv G G  g  +A rl  a++gl+vv ie
     KIR64577.1  8 DVVVLGLGVGGEEVAGRL--AEAGLSVVGIE 36
                   9*****************..********995 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.7
  Lycopene_cycl 120 slvvleggrkirarlvvdarglaslkkarrlglQtfyGvevevdnppfdldkmvlMD 176
                     + + +ggr +r++ ++d+ g   + +  +  +   +G+++ + + pf +  + l D
     KIR64577.1 103 ERFTGKGGRFVRGSGALDGPG---RVRVGDRVFRARHGIVLGTGTRPFVPPLPGLAD 156
                    455678899999999999888...555566677888888888888888777766666 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00032
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsll 37 
                    ++v G+G+ gl lA+    a+ g++v+++eas  +l
     KIR64577.1 175 LLVLGGGAIGLELAQVF--ARFGVEVTVLEASGRVL 208
                    689*************9..************98875 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 4.9
  Lycopene_cycl 130 irarlvvdarglaslkkar 148
                     rar+  da+g+as+ ++ 
     KIR64577.1 332 RRARAGADASGAASAVGGA 350
                    4789999999999887654 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   1.1       4.5   4.5e+03       2      30 ..       8      36 ..       7      38 .. 0.90
   2 ?    7.3   0.4    0.0017       1.6       3      35 ..     175     207 ..     174     210 .. 0.91
   3 ?    5.0   0.0    0.0083       8.3     117     165 ..     221     268 ..     214     285 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 4.5
                 SEEEE--SHHHHHHHHHHHHTT--EEEE- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllle 30
                 dv+v+G G  G   A ++a++g +V+ +e
   KIR64577.1  8 DVVVLGLGVGGEEVAGRLAEAGLSVVGIE 36
                 89********************9998777 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0017
                  EEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like   3 viviGgGaAGlmaAisaakrgkrVlllekakkl 35 
                  ++v+GgGa Gl  A   a+ g +V++le+  ++
   KIR64577.1 175 LLVLGGGAIGLELAQVFARFGVEVTVLEASGRV 207
                  589*************************98765 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0083
                  HHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----S CS
  HI0933_like 117 kelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGl 165
                  ++l++ gv++ +e + ++v+++    f++++ ++ e++a++l++ tG  
   KIR64577.1 221 AALRADGVRIATEVRAERVDHDGRA-FTLRAVGGAEFTAERLLVVTGRR 268
                  678999*************886555.999998*************9965 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   4.9      0.92   9.1e+02       2      33 ..       7      38 ..       6      41 .. 0.95
   2 ?   12.7   0.5   5.5e-05     0.055       5      34 ..     176     205 ..     174     279 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.92
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekr 33
                   +dV++ G G  G   a  L+eaG +vv +e+r
     KIR64577.1  7 VDVVVLGLGVGGEEVAGRLAEAGLSVVGIERR 38
                   79****************************97 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.5e-05
                    EEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                    l+ G+G  Gl la++ ++ Gv+v+++e   
     KIR64577.1 176 LVLGGGAIGLELAQVFARFGVEVTVLEASG 205
                    799***********************9865 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.7       2.4   2.4e+03       2      28 ..      12      38 ..      11      46 .. 0.79
   2 ?   11.2   1.0   0.00033      0.33       1      30 [.     177     206 ..     177     209 .. 0.94
   3 ?   -1.2   0.0       2.5   2.4e+03      10      22 ..     218     230 ..     215     247 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.4
                   E--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  2 vGaGlsGlvaAylLakagfdvlllekr 28
                   +G G++G   A +La+ag++v+ +e+r
     KIR64577.1 12 LGLGVGGEEVAGRLAEAGLSVVGIERR 38
                   6668888888999********999987 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00033
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdr 30 
                    ++G+G+ Gl +A+  a+ g++v++le++ r
     KIR64577.1 177 VLGGGAIGLELAQVFARFGVEVTVLEASGR 206
                    89************************9866 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.5
                    HHHHHHHCCTEEE CS
  NAD_binding_8  10 vaAylLakagfdv 22 
                    vaA++L+ +g+++
     KIR64577.1 218 VAAAALRADGVRI 230
                    7899999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3240.31
//
Query:       KIR64578.1  [L=253]
Description: enoyl-CoA hydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-38  131.3   0.0    4.4e-38  131.0   0.0    1.1  1  ECH_1          Enoyl-CoA hydratase/isomerase
    6.4e-17   62.0   0.0    3.6e-16   59.6   0.0    1.9  1  ECH_2          Enoyl-CoA hydratase/isomerase
  ------ inclusion threshold ------
      0.033   14.1   0.0       0.31   11.0   0.0    2.0  2  Peptidase_S49  Peptidase family S49


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.0   0.0   7.4e-42   4.4e-38       2     222 ..       7     225 ..       6     243 .. 0.91

  Alignments for each domain:
  == domain 1  score: 131.0 bits;  conditional E-value: 7.4e-42
                 EETTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHCHHHHHHHCCHHHHHHHHHHSSSEEEEEE-SEEE CS
       ECH_1   2 ieagvaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeekakqallkeevlelwtklytvpkpviaavnGaai 100
                   a+v  + l+rP   Na++  +   l++a+  +e d+++ ++vL G ++ F+aGadlk++   +  +  ++        t+l  + kpviaa++G+a+
  KIR64578.1   7 HAAAVTTVILDRPASRNAVDGPTARALADAFRAFEADPAAAVAVLWGAGGTFCAGADLKAIGTPS-GNRVEPDGDGPMGPTRL-RLSKPVIAAISGYAV 103
                 568999*******************************************************9964.55556666666666665.5789*********** PP

                 THHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHHHSCHHHHH CS
       ECH_1 101 gGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaeklaekspaalr 199
                 +GGlelal cD+++a  +a+ g    + G+    ggt +l+r +G+s+A  ++l+g+++ a+ea  +Glv++ v+      ea  la+++a++++a lr
  KIR64578.1 104 AGGLELALWCDLRVAESDAVLGVFCRRWGVPLVDGGTVRLPRLIGESRALDLILTGRPVPAEEAYAMGLVNRLVAPGAARAEAERLAAEIARHPQACLR 202
                 *****************************99999***************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHH CS
       ECH_1 200 qlkealnakledalaeqleaeak 222
                   ++a+ a ++  ++ +l++e  
  KIR64578.1 203 NDRAAVLAGANLPEPDALAVELA 225
                 ********999999999988865 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   6.1e-20   3.6e-16       2     190 ..      12     195 ..      11     225 .. 0.87

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 6.1e-20
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEET CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivmG 100
                 ++++L+rp++ Na++ + +ral++a++++e+d+++++ vl gag   fCAG D++a+ +   ++ +           +  +  +++kpv+a + G+++ 
  KIR64578.1  12 TTVILDRPASRNAVDGPTARALADAFRAFEADPAAAVAVLWGAG-GTFCAGADLKAIGTPSGNRVEP-----DGDGPMGPTRLRLSKPVIAAISGYAVA 104
                 6899**************************************99.89**********9998887555.....4556777788899************** PP

                 HHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT... CS
       ECH_2 101 gGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpseklealeeaLaeless 190
                 gG+ l++ + +rv+  ++v+ +   + G+    Gg+  L+rl g + +l l lTG+ + +++a+a+gl + +v   +  a +e+La+   +
  KIR64578.1 105 GGLELALWCDLRVAESDAVLGVFCRRWGVPLVDGGTVRLPRLIGeSRALDLILTGRPVPAEEAYAMGLVNRLVAPGAARAEAERLAAEIAR 195
                 ****************************877779********7747799************************999888888888875433 PP

>> Peptidase_S49  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.2e-05      0.31       6      41 ..      91     126 ..      86     128 .. 0.92
   2 ?    0.8   0.0     0.072   4.3e+02     113     151 ..     152     190 ..     147     193 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.2e-05
                    T--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE- CS
  Peptidase_S49   6 kkPvvasaenvaaSggYylasaadkivanpstivgs 41 
                     kPv+a ++++a  gg  la  +d  va++ ++ g+
     KIR64578.1  91 SKPVIAAISGYAVAGGLELALWCDLRVAESDAVLGV 126
                    7*******************************9985 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.072
                    HHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHC CS
  Peptidase_S49 113 qvdkiAegrvltgqqAlklgLvdelgtvddavaeleela 151
                    ++d i +gr   +++A + gLv +l     a ae+e la
     KIR64578.1 152 ALDLILTGRPVPAEEAYAMGLVNRLVAPGAARAEAERLA 190
                    56667778888899***********99999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1898.38
//
Query:       KIR64579.1  [L=214]
Description: cob(II)yrinic acid a,c-diamide reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-29  102.0   0.4    6.1e-29  101.3   0.4    1.4  1  Nitroreductase  Nitroreductase family
    0.00071   19.2   0.0      0.061   12.9   0.0    2.6  2  TM1586_NiRdase  Putative TM nitroreductase


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.4   6.8e-33   6.1e-29       1     169 [.       7     173 ..       7     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 6.8e-33
                     HHH--B--.-B-S----HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEEE CS
  Nitroreductase   1 irkRrSiR.kFddepvpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvli 94 
                     i +Rr +R +F+ epvp+++l +il+aa+ aPs g +qpw+fv+v+d ++r+++  +++++  +  a++++a  +r       + + + ++++ +
      KIR64579.1   7 IHRRRDVRaQFTGEPVPADTLHRILDAAHAAPSVGYSQPWDFVLVRDAAVRRRFHRHVQAERATFAATLDDAAAER---FARIKIDGVLESTLSV 98 
                     668***********************************************************************99...999999********** PP

                     EE---TTS---HHHHHHHHHH.....HHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEEE CS
  Nitroreductase  95 vivatldkserkaaerayrya.....lldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliavG 169
                     v+     + er  ++   r a     l ++++a+qnl+LaAta+Glg+ +++++ e    +++llg+p + ++v+ ++vG
      KIR64579.1  99 VV---TYDPERGGPAVLGRHAiadagLYSVCLAIQNLWLAATAEGLGVGWVSFYRESF--LAELLGVPAGVRPVAWLCVG 173
                     **...334444444444444400011556778**************************..********99*******999 PP

>> TM1586_NiRdase  Putative TM nitroreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   6.8e-06     0.061     158     191 ..      25      58 ..       6      76 .. 0.81
   2 !    3.4   0.0    0.0052        47      89     110 ..     130     151 ..     122     203 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.8e-06
                     HHHHHHHHHHHTS--GGG----EEE.E-SSEE.. CS
  TM1586_NiRdase 158 ewfkeileaarlAPsAlNqqpwrfelkdddeiki 191
                     + + +il+aa  APs   +qpw f l+ d  ++ 
      KIR64579.1  25 DTLHRILDAAHAAPSVGYSQPWDFVLVRDAAVRR 58 
                     56789*********************99877754 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0052
                     HHHHHHHHHTT-EEEEES--SS CS
  TM1586_NiRdase  89 eqlvLkltalGlgtcWvggtyk 110
                     ++l L +ta+Glg  Wv++  +
      KIR64579.1 130 QNLWLAATAEGLGVGWVSFYRE 151
                     7899*************97544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1673.54
//
Query:       KIR64580.1  [L=113]
Description: hypothetical protein TK50_02680 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 818.45
//
Query:       KIR64581.1  [L=283]
Description: (2Fe-2S)-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-13   48.1   0.0    1.4e-12   47.4   0.0    1.3  1  Rieske    Rieske [2Fe-2S] domain
      1e-09   38.3   0.0    1.7e-09   37.6   0.0    1.4  1  Rieske_2  Rieske-like [2Fe-2S] domain
    0.00074   19.9   3.3     0.0012   19.2   3.3    1.3  1  DUF2231   Predicted membrane protein (DUF2231)


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   2.3e-16   1.4e-12       2      84 ..     180     265 ..     179     270 .. 0.90

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 2.3e-16
                 EEEEEEGGGC-TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGGSEEE...TT.EEE-TTT--EEE.TTSBEEE-TTHHH CS
      Rieske   2 wvavakesdvpegdpltvkvggeplvvlrdedgevyAlsdvCtHrgaplsegkid...ekgvleCpcHgwayd.adGkvikgPaprp 84 
                 w+++a   ++p+++ +t +v +  ++++r+ ++ev ++ ++C+H+  pl eg+++   +   ++Cp+Hg+a++ + G+v +gP+ ++
  KIR64581.1 180 WHPLADMANLPQRKLVTREVDDVSVILYRH-GDEVTVMLERCPHQSGPLGEGEVTeidGHACVVCPWHGSAFRlNGGEVMHGPSGND 265
                 88999999*********************6.******************8888743558889*********************8765 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   2.8e-13   1.7e-09       2     100 ..     180     277 ..     179     281 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 2.8e-13
                 EEEEEECCCS-TTB-EEEEETTEEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-BBSS-TT.SB-BEE-EEESTS CS
    Rieske_2   2 wvpvckledlvketgvaalvdgkqvalfrlekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGecledee.vslkvypvrvedg 99 
                 w+p++ +++l++ + v+  vd+  v+l r   +ev  + +++p  ++ +l +G v + +g+ +v++P +++ f+L+ Ge+++ ++    ++ p+rv dg
  KIR64581.1 180 WHPLADMANLPQRKLVTREVDDVSVILYRH-GDEVTVMLERCPH-QSGPLGEGEVTEIDGHACVVCPWHGSAFRLNGGEVMHGPSgNDQQILPTRVVDG 276
                 9************************99998.999999*******.8***********************************955536667777777777 PP

                 E CS
    Rieske_2 100 k 100
                  
  KIR64581.1 277 V 277
                 6 PP

>> DUF2231  Predicted membrane protein (DUF2231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   3.3     2e-07    0.0012       8     102 ..      78     163 ..      72     165 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2e-07
     DUF2231   8 nlvaalvigflaalaGlvelllaepsirakktallHavggvlllalivaltvWrfvlrlreeeqvsplylalslvvvvlllvqgwlGaeLvyefg 102
                 ++++++v+++ aa+aGl ++ +   s ++++++l+Ha+ +++ l l+++    ++ +rlr ++    ++ al+ + ++  ++ ++lG++L+y+ g
  KIR64581.1  78 LVGLGTVSAVPAAIAGLNDWAAL--SREQRRVGLVHAAANAVGLTLYAG----SLAARLRGRH---GTGRALAYLGLGAASAGAYLGGHLAYKQG 163
                 7899*****************99..788899******************....9999998887...45566677777778888999999998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2113.52
//
Query:       KIR64582.1  [L=401]
Description: peptidoglycan-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-06   27.3   0.0    5.3e-06   26.4   0.0    1.5  1  LysM      LysM domain


Domain annotation for each model (and alignments):
>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0     3e-10   5.3e-06       1      44 []     187     233 ..     187     233 .. 0.96

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 3e-10
                 EEE-TT--HHHHHHHC...TCHHHHHHHHCTCSSCGG--TTEEEEEE CS
        LysM   1 YtVkkGDTLwsIAkry...gitveklleaNnlsspdkifpGqkLkiP 44 
                 Y+V kGD L  +A ry      +++ +++N+l +pd+i+pGq +++P
  KIR64582.1 187 YRVAKGDYLGEVAERYlddFDRYRDVAKLNRLGDPDRIRPGQLITLP 233
                 9******************77889*******************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 2593.58
//
Query:       KIR64583.1  [L=69]
Description: hypothetical protein TK50_02710 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   15.1   0.1      0.023   14.6   0.1    1.2  1  DUF2970   Protein of unknown function (DUF2970)


Domain annotation for each model (and alignments):
>> DUF2970  Protein of unknown function (DUF2970)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   1.3e-06     0.023      20      50 ..      17      50 ..      14      52 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-06
     DUF2970 20 nrerDfaqls...plhviivGlilaalfvllLil 50
                +++rD ++++   p +vii Gl+++a+ v +L l
  KIR64583.1 17 ELRRDGERGDspvPTAVIIFGLVFVAMAVTALAL 50
                67899999999999***************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 606.22
//
Query:       KIR64584.1  [L=528]
Description: secretion system protein E [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-32  110.5   0.3    1.1e-31  109.9   0.3    1.1  1  T2SSE            Type II/IV secretion system protein
    4.8e-07   30.3   0.7    7.5e-06   26.4   0.0    2.3  2  AAA_16           AAA ATPase domain
    0.00062   19.6   0.0    0.00094   19.0   0.0    1.2  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    0.00081   18.7   0.1     0.0086   15.4   0.0    2.2  2  Zeta_toxin       Zeta toxin
    0.00093   19.4   0.0     0.0049   17.0   0.0    2.2  1  AAA_33           AAA domain
     0.0036   17.8   0.0       0.01   16.4   0.0    1.7  1  ABC_tran         ABC transporter
     0.0073   16.9   0.0      0.021   15.3   0.0    1.8  1  AAA_18           AAA domain
  ------ inclusion threshold ------
      0.038   13.5   0.0      0.066   12.7   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
      0.043   13.5   0.0      0.084   12.6   0.0    1.4  1  AAA_30           AAA domain
      0.045   14.0   0.0       0.12   12.6   0.0    1.7  1  AAA_22           AAA domain
      0.048   13.9   0.4       0.51   10.6   0.0    2.4  2  AAA_28           AAA domain
       0.12   12.8  11.9       0.29   11.5   4.2    3.3  2  STAS_2           STAS domain
       0.12   11.6   0.0       0.21   10.8   0.0    1.3  1  Septin           Septin
       0.13   11.1   0.0        0.2   10.5   0.0    1.1  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
       0.13   12.9   0.1       0.33   11.7   0.1    1.7  1  LptE             Lipopolysaccharide-assembly
       0.21   11.2   0.0       0.34   10.5   0.0    1.3  1  cobW             CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.9   0.3   9.7e-35   1.1e-31       5     267 ..     145     432 ..     142     437 .. 0.85

  Alignments for each domain:
  == domain 1  score: 109.9 bits;  conditional E-value: 9.7e-35
       T2SSE   5 leallddekvsdihvekpervkvrervdg.ie.lreveelekaalerl..isriaalakldiseerplqdarlpekgvrlrvvllPvvagealviRkks 99 
                 l+ ll d ++ ++h+   ++v++ +r +g ++  +++++++++++e l  ++r a ++++++s+++p +d +lp +g rl +v+l v++ + +viRk++
  KIR64584.1 145 LQTLLVDGTIEEVHILGCDQVRI-TRHGGgVDwADPIADSDDELVEILqaAARRAGATERSLSTSKPTLDLQLP-DGSRLAAVFL-VSHRPYAVIRKHN 240
                 57789999***************.66666354267888999888877622567788999***************.******9999.778899******* PP

       T2SSE 100 akeltlddlg.....aeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiql.....eganqvqlnak...... 182
                 + e++ldd++      +e+ ++ ++++lr+++r+  +i+v+G  g GKtt++ al+ ei+++ e  v++E ++E+ +     ++  +++ +a+      
  KIR64584.1 241 TLEVSLDDIAggrgdLDEMIDPLLRDFLRASMRAGLNIMVAGLAGAGKTTVIRALMDEIPAD-EPYVLLEESRELLPtrrghKHRAVMSFEAReghger 338
                 *********8222223455558999*************************************.9**********9874322233344455555****** PP

       T2SSE 183 ......kakvtfadllraaLRlrPDrimvGEiRdketleilkAvnTGHlgslsTlHansaagalerLeqlgae....veaaelkssilavvdivv 267
                       +++v +adl+  +LR+   ri+vGE+R +e + +l+A+ T   gs+ T+Ha+s+ g+ er+ +l+      +  ++ +++  +++d++v
  KIR64584.1 339 gldgrpAGEVSIADLIPVSLRMGVLRIIVGEVRSREIVPMLQAMTTS-RGSMCTIHARSPGGVGERIVELALShgreMTVDQARRMAGNALDLIV 432
                 ********************************************997.677*******************9777888888888888888888776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2      0.19   2.1e+02      39      88 ..      70     122 ..      70     227 .. 0.49
   2 !   26.4   0.0   6.7e-09   7.5e-06       7      63 ..     258     314 ..     252     433 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.19
      AAA_16  39 slvrellralekdggiflrgkcdqlesa........ipysalaqalareellrqllde 88 
                 ++vrel+r+l+++  ++l+++ ++++++        ++ +++a+++   + +r  +++
  KIR64584.1  70 AVVRELRRELSER--LTLWQRGREFDADaedverarLAVAVVAEYA---DAVRRAGTP 122
                 5899999999988..5566666666222223222111111122222...223333333 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 6.7e-09
      AAA_16   7 eeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 e ++ Ll+ + r+++  + ++++ G +G GK++++r+l++++ +d+ ++l ++ ++l
  KIR64584.1 258 EMIDPLLRDFLRASMRAGLNIMVAGLAGAGKTTVIRALMDEIPADEPYVLLEESREL 314
                 445556555557888888*******************************98888887 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   8.4e-07   0.00094       1      55 [.     278     331 ..     278     338 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 8.4e-07
  Viral_helicase1   1 ivvhGvpGcGKStlirkllrtsliltvnrptaelltegk...pklpnlsvrtvdsflm 55 
                      i+v+G +G+GK+t+ir l+++   + ++ p  +ll e++   p    +++r v+sf+ 
       KIR64584.1 278 IMVAGLAGAGKTTVIRALMDE---IPADEP-YVLLEESRellPTRRGHKHRAVMSFEA 331
                      69*****************99...667777.555555554888888888888888875 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.6e-06    0.0086      19      60 ..     278     317 ..     269     332 .. 0.83
   2 ?    0.5   0.0      0.27     3e+02     126     155 ..     431     467 ..     373     473 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.6e-06
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldpDdlRelhPe 60 
                 i+++G  GAGK++++++l de+ +++ +v l++   Rel P 
  KIR64584.1 278 IMVAGLAGAGKTTVIRALMDEIPADEPYVLLEE--SRELLPT 317
                 899*******************99999999864..4666665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.27
  Zeta_toxin 126 vvvvavkkelSrlgvldRyeeevae......g.Rlvp 155
                 +v+v+v+ e+++ g + R+   v+e      g R++ 
  KIR64584.1 431 IVYVTVEDETAIGGRKHRFVSHVEEvigvgeGsRITT 467
                 6789999999999999999999777666666557665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.4e-06    0.0049       2      32 ..     278     312 ..     278     449 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.4e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklg....avllssdt 32 
                 +++ Gl+G+GK+t+++ l+ + +    +vll++  
  KIR64584.1 278 IMVAGLAGAGKTTVIRALMDEIPadepYVLLEESR 312
                 6999***************9999999999999876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.9e-06      0.01       7      51 ..     271     316 ..     266     338 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.9e-06
                 EEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlke 51 
                 ++++g  + + G  GaGK+t++++l+ +   +e  +ll+ +++l  
  KIR64584.1 271 SMRAGLNIMVAGLAGAGKTTVIRALMDEIPADEPYVLLEeSRELLP 316
                 78899999*********************99999999886666655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.9e-05     0.021       1      21 [.     278     298 ..     278     331 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.9e-05
      AAA_18   1 IlltGtpGvGKttlakeLskr 21 
                 I+++G +G+GKtt+ ++L ++
  KIR64584.1 278 IMVAGLAGAGKTTVIRALMDE 298
                 99****************776 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.9e-05     0.066      25      61 ..     267     303 ..     263     309 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.9e-05
       AAA_7  25 llelllknkkpvllvGptGtGKtviikdllkkldkek 61 
                 +l+  ++++ ++++ G +G GKt++i+ l+++++ ++
  KIR64584.1 267 FLRASMRAGLNIMVAGLAGAGKTTVIRALMDEIPADE 303
                 677889999**********************999664 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.5e-05     0.084      21      41 ..     278     298 ..     265     310 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.5e-05
      AAA_30  21 avltGpAGtGKttalkalrea 41 
                  ++ G AG+GKtt+++al + 
  KIR64584.1 278 IMVAGLAGAGKTTVIRALMDE 298
                 5789*************9554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00011      0.12       7      31 ..     277     301 ..     272     336 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
      AAA_22   7 ilvvtGesGtGKTtllrrlleqlde 31 
                  ++v G +G+GKTt++r l+++ ++
  KIR64584.1 277 NIMVAGLAGAGKTTVIRALMDEIPA 301
                 6899***************999864 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.48   5.4e+02     113     143 ..     104     133 ..      68     156 .. 0.59
   2 ?   10.6   0.0   0.00046      0.51       2      44 ..     278     324 ..     277     342 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.48
      AAA_28 113 fllppapeidddgeRredleereaiderlre 143
                 + +++++e+  d++Rr +   ++  +++l++
  KIR64584.1 104 LAVAVVAEY-ADAVRRAGTPMAAGEERLLLD 133
                 333444455.566666655555555555555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00046
      AAA_28   2 ivitGgestGKTtlleaLaar...gypvv.pEaareileeklakged 44 
                 i++ G  ++GKTt+++aL ++   + p+v  E  re+l  +   +++
  KIR64584.1 278 IMVAGLAGAGKTTVIRALMDEipaDEPYVlLEESRELLPTRRGHKHR 324
                 7888999************7667755544499999999776655554 PP

>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   4.2   0.00026      0.29       6      60 ..      66     122 ..      65     142 .. 0.92
   2 ?    4.7   0.0     0.033        37      39      67 ..     183     211 ..     170     215 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00026
      STAS_2   6 eldldtaaelreqlleal...aagaevvvDlsgvervDsaalalLlalartarargrr 60 
                 ++d + ++elr++l e+l   ++g+e   D+ +ver+ +a +a++++ a + r++g +
  KIR64584.1  66 RVDFAVVRELRRELSERLtlwQRGREFDADAEDVERARLA-VAVVAEYADAVRRAGTP 122
                 6999**************9**99**************999.9********99999876 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.033
      STAS_2  39 vDsaalalLlalartarargrrlvlrglp 67 
                  D  ++  L a+ar+a+a +r+l+ + ++
  KIR64584.1 183 SDDELVEILQAAARRAGATERSLSTSKPT 211
                 5778899*****************99876 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00019      0.21       5      27 ..     276     298 ..     273     326 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
                 EEEEEEEBTTSSCCCCCCTTSSS CS
      Septin   5 ftlmvvGesglGkttlintlfet 27 
                 +++mv+G  g Gktt+i++l+ +
  KIR64584.1 276 LNIMVAGLAGAGKTTVIRALMDE 298
                 89*****************9976 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00018       0.2      17      42 ..     277     302 ..     271     309 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00018
  TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairar 42 
                     i+++G +G+GKt+++++l+++i a 
     KIR64584.1 277 NIMVAGLAGAGKTTVIRALMDEIPAD 302
                    6899*****************99775 PP

>> LptE  Lipopolysaccharide-assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1    0.0003      0.33       8      97 ..      57     137 ..      53     199 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0003
                 ES.STT..SHHHSHHHHHHHHHHH..CHTTEEEES..-SSEEEEEEEEEE.TTSCEEEEEEEEEEEEEEEETTS...SSCCCHHHHHHHHHHHHHH CS
        LptE   8 pfenes.eprlgqeltnaLrdelarrgrlkvvdvd..adavlegeitsytledgtaseyrltltvqvrltdakd...adsllakeaeedalrraae 97 
                 p+++   +pr++ ++ ++Lr+el+ r +l + +++  ada           ed+   + rl + v +++ d      a +  a  +e+ +l++ + 
  KIR64584.1  57 PVAPAPpRPRVDFAVVRELRRELSERLTLWQRGREfdADA-----------EDVE--RARLAVAVVAEYAD--AvrrAGTPMAAGEERLLLDQVTA 137
                 55555578****************9997766665577999...........8777..99999999999999..44443333333444444444444 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0003      0.34       3      30 ..     278     305 ..     276     315 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0003
                 EEEEESTTCCHHHHHHHHHCT--SS-EE CS
        cobW   3 tvltGflGsGKTtLlnhllenraglkla 30 
                 ++++G  G+GKTt++++l+++    +  
  KIR64584.1 278 IMVAGLAGAGKTTVIRALMDEIPADEPY 305
                 6799**************9665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 3521.99
//
Query:       KIR64585.1  [L=266]
Description: hypothetical protein TK50_02730 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1915.37
//
Query:       KIR64586.1  [L=219]
Description: flagellar basal body P-ring biosynthesis protein FlgA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-05   24.8   0.6    6.9e-05   23.4   0.3    1.9  2  SAF             SAF domain
  ------ inclusion threshold ------
      0.024   14.7   0.0      0.053   13.6   0.0    1.5  1  ChapFlgA        Chaperone for flagella basal body P-ring form
       0.14   12.2   4.1       0.29   11.2   0.6    2.7  2  RcpC            Flp pilus assembly protein RcpC/CpaB
        2.4    8.2   5.7        1.1    9.3   0.1    2.9  3  Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain


Domain annotation for each model (and alignments):
>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.3   1.5e-08   6.9e-05       3      60 ..      60     118 ..      58     121 .. 0.91
   2 ?   -2.7   0.0       2.2   9.8e+03      45      55 ..     141     151 ..     129     157 .. 0.64

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.5e-08
                 EEEESSTB-TT-BEBTTTEEEECECGGCCTSCCCGG...HHHHTTEEESS-B-TT-B-BGG CS
         SAF   3 VvvAardikaGeviteddltlkrpiashkigllpia...ygeviGkratrdikaGepvhah 60 
                 ++ +ar+++ G ++++ddl ++++  +  +gl p +   +++v+G+ra+ ++ +G++++  
  KIR64586.1  60 YLAVARAVEVGRTLGADDLVTVQVAGG--QGLRPVPaaqLDDVVGMRAAVALTPGTLLTLG 118
                 6899********************755..9999999999******************9865 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.2
                 EEESS-B-TT- CS
         SAF  45 kratrdikaGe 55 
                 ++ ++ + +G+
  KIR64586.1 141 RVPAKRLHPGD 151
                 44444444443 PP

>> ChapFlgA  Chaperone for flagella basal body P-ring formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.2e-05     0.053       3      70 ..      60     130 ..      58     132 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
    ChapFlgA   3 vvvaarpLkrgevitasdlalkkrdlsrlrggvlt...deaigkkvkrsiragqpirqnmlekpplVkkgq 70 
                 ++  ar+++ g+++ a+dl++ ++   +  + v     d+++g+++ + +++g++++  +l + pl   gq
  KIR64586.1  60 YLAVARAVEVGRTLGADDLVTVQVAGGQGLRPVPAaqlDDVVGMRAAVALTPGTLLTLGQLTDDPLLGPGQ 130
                 677899**************99999877555554324889*********************9998876666 PP

>> RcpC  Flp pilus assembly protein RcpC/CpaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.31   1.4e+03      18      39 ..      63      84 ..      51     110 .. 0.78
   2 ?   11.2   0.6   6.4e-05      0.29       7      53 ..     126     171 ..     123     216 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.31
        RcpC 18 vdevtgvaglirpGdrVDVllt 39
                v  ++ v+  + + d+V+V + 
  KIR64586.1 63 VARAVEVGRTLGADDLVTVQVA 84
                5666778888888899998887 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 6.4e-05
        RcpC   7 lppgkrAvaievdevtgvaglirpGdrVDVlltesekedsesektva 53 
                 l pg++ +a++    +  a+ ++pGdrV ++ t  ++++++++++++
  KIR64586.1 126 LGPGQQQLALDLAPGRVPAKRLHPGDRVLLVST-PDRSSGGQSASST 171
                 789*************************99999.3333333333333 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.18   8.2e+02      22      45 ..      57      81 ..      48      83 .. 0.75
   2 ?   -1.8   0.1      0.72   3.2e+03      25      44 ..     100     116 ..      95     118 .. 0.71
   3 ?    9.3   0.1   0.00024       1.1      30      45 ..     140     155 ..     134     158 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.18
                    -EEEEEE-GGGS.SST--TTEEEEE CS
  Prot_ATP_ID_OB 22 eevvvslagavp.remLrpgDlVav 45
                    + +++ +a av    +L + DlV v
      KIR64586.1 57 TGSYLAVARAVEvGRTLGADDLVTV 81
                    5678888888884444999999988 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.72
                     EEEE-GGGSSST--TTEEEE CS
  Prot_ATP_ID_OB  25 vvslagavpremLrpgDlVa 44 
                     vv + +av+   L pg+l+ 
      KIR64586.1 100 VVGMRAAVA---LTPGTLLT 116
                     455666666...88888876 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00024
                     GGGSSST--TTEEEEE CS
  Prot_ATP_ID_OB  30 gavpremLrpgDlVav 45 
                     g vp+++L pgD+V++
      KIR64586.1 140 GRVPAKRLHPGDRVLL 155
                     78************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1468.16
//
Query:       KIR64587.1  [L=188]
Description: hypothetical protein TK50_02745 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.095   12.1   4.9       0.12   11.9   4.9    1.1  1  FAP       Fibronectin-attachment protein (FAP)


Domain annotation for each model (and alignments):
>> FAP  Fibronectin-attachment protein (FAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   4.9   6.5e-06      0.12       8      90 ..       2      84 ..       1     112 [. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.5e-06
         FAP  8 skrrkglsktlaiaavagasavalalPavanadpePaPppPstaeaapaeaaaapaPaapapaPapadpnapeaaPapadPna 90
                ++rr g++  l ++a++++ ++a      a a p+ +  p +ta+ +pae  aa + a  a +   a++ a++   +p  P+ 
  KIR64587.1  2 RTRRPGRWMILLVTALTATPVAACGAKPEAAARPQATAGPSATATHSPAEERAAREAALAAYSGYLAASRAASRRSDPRHPEL 84
                689****************9999998888999988888888888888887777665555555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1580.15
//
Query:       KIR64588.1  [L=262]
Description: peptidase A24 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-10   41.1  14.0    1.8e-10   41.1  14.0    1.7  2  Peptidase_A24  Type IV leader peptidase family
     0.0066   16.5   0.1       0.03   14.4   0.0    2.0  2  DiS_P_DiS      Bacterial Peptidase A24 N-terminal domain
  ------ inclusion threshold ------
        2.5    7.6   5.4        3.1    7.3   0.4    2.2  2  Mu-like_Com    Mu-like prophage protein Com


Domain annotation for each model (and alignments):
>> Peptidase_A24  Type IV leader peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       2.3   1.4e+04      51      55 ..      97     101 ..      87     107 .. 0.45
   2 !   41.1  14.0   3.1e-14   1.8e-10       5      99 ..     121     219 ..     114     234 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.3
  Peptidase_A24  51 lgalv 55 
                    l+al+
     KIR64588.1  97 LAALA 101
                    22222 PP

  == domain 2  score: 41.1 bits;  conditional E-value: 3.1e-14
  Peptidase_A24   5 tillvlsviDldtrtlpdeltlp.....llllgvlfaqllllglpnlaqa.vlgalvgalvlllislvdeqamGgGDvklaavlgaflgwerllla 94 
                    ++ + l +iD+   +lpd+lt p     l+l gv +a  ++ g++ ++ a ++ga +++++    +l+ ++++G GD+kla+++ga+lgw+ ++++
     KIR64588.1 121 CCAVPLVLIDVAVHRLPDRLTWPaaagvLALYGVAAA--TSAGIAPWLRAaLAGAGLALAFAATTLLLGRRGFGLGDAKLALGVGALLGWYGWPVL 214
                    45556799***************87777777777777..55555555544045554444444443588999******************9988655 PP

  Peptidase_A24  95 vlvai 99 
                    vl   
     KIR64588.1 215 VLGLL 219
                    54332 PP

>> DiS_P_DiS  Bacterial Peptidase A24 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     5e-06      0.03      27      81 ..      53     104 ..      36     107 .. 0.86
   2 ?   -1.5   0.0      0.47   2.8e+03      10      26 ..     129     143 ..     121     161 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5e-06
   DiS_P_DiS  27 rSrCpkCghklkwleliPvlSylllrgrCraCkakislryplvElltallfllla 81 
                 r +Cp+Cg++l + +  P lS      rC  C+a++ +   +vEl++ +++++l+
  KIR64588.1  53 RVACPRCGTPLGLDRPWPALSP---AARCGGCRARVGAPAGAVELAALAALAVLV 104
                 679****************995...68*****************98876665554 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.47
   DiS_P_DiS  10 lnvviyrlpkkkslvkp 26 
                 ++v+++rlp    l++p
  KIR64588.1 129 IDVAVHRLPD--RLTWP 143
                 6899999997..55555 PP

>> Mu-like_Com  Mu-like prophage protein Com
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.4   0.00052       3.1      25      32 ..      54      61 ..      49      65 .. 0.88
   2 ?    2.3   0.6     0.019   1.2e+02       6      21 ..      77      93 ..      74      96 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00052
  Mu-like_Com 25 iKCPRCGt 32
                 + CPRCGt
   KIR64588.1 54 VACPRCGT 61
                 78*****9 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.019
  Mu-like_Com  6 RCGeC.aRLLaKaeAlD 21
                 RCG C aR+ a a+A++
   KIR64588.1 77 RCGGCrARVGAPAGAVE 93
                 9****679999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       861  (0.0480228); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1779.10
//
Query:       KIR64589.1  [L=207]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-20   71.9   1.0    7.7e-20   71.0   1.0    1.4  1  PAP2      PAP2 superfamily
    1.2e-07   31.6  12.2    3.3e-07   30.2  12.3    1.7  1  PAP2_3    PAP2 superfamily
  ------ inclusion threshold ------
      0.075   13.2   1.6        2.6    8.2   0.2    2.3  2  DUF212    Divergent PAP2 family
       0.14   12.7   0.9       0.19   12.3   0.1    1.6  2  PAP2_C    PAP2 superfamily C-terminal


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   1.0   1.7e-23   7.7e-20       7     126 ..      73     177 ..      63     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 1.7e-23
        PAP2   7 lalalaalltsvlKdlvgrpRPfflaeetkldtqvstletseskeakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlvalsRlyl 105
                  +++la+  +++lK++v++ RP+ + +          + +     +++sfPS Hs++a+ala++++ll +r+ +          ++ lavl a+sR+++
  KIR64589.1  73 ATVVLAYGGSELLKTVVDQDRPCRVPTDLLIIAER--CPP----VGDWSFPSNHSTIAGALATAIVLLSPRLAWY---------AVPLAVLAAFSRVFV 156
                 345556666999***********998876655542..222....3579***************************.........9************** PP

        PAP2 106 gvHflsDvlaGlliGialaal 126
                 gvH+++DvlaGll+G++++ +
  KIR64589.1 157 GVHYPHDVLAGLLLGALVTGV 177
                 *****************9875 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2  12.3   7.4e-11   3.3e-07     126     187 ..     115     174 ..      28     177 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 7.4e-11
      PAP2_3 126 afPSlHvawallvalalwrlrrkrllrvlalllnvlmivatvatgnHYlvDviaGvalalva 187
                 +fPS H ++a  +a a++ l+++    ++a+ l+vl +++ v  g HY  Dv+aG++l++++
  KIR64589.1 115 SFPSNHSTIAGALATAIVLLSPRL--AWYAVPLAVLAAFSRVFVGVHYPHDVLAGLLLGALV 174
                 7***************99999999..********************************9987 PP

>> DUF212  Divergent PAP2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2   0.00059       2.6      41      60 ..     115     134 ..      74     156 .. 0.82
   2 ?    4.4   0.1    0.0086        38     113     128 .]     159     174 ..     152     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00059
      DUF212  41 gmPSsHsalvtalatavgle 60 
                  +PS Hs++  alata++l 
  KIR64589.1 115 SFPSNHSTIAGALATAIVLL 134
                 69**************9984 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0086
      DUF212 113 HtpleVlvGallGiiv 128
                 H p++Vl+G+llG++v
  KIR64589.1 159 HYPHDVLAGLLLGALV 174
                 9************975 PP

>> PAP2_C  PAP2 superfamily C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1         2   8.9e+03      32      47 ..      36      51 ..      30      54 .. 0.53
   2 ?   12.3   0.1   4.3e-05      0.19       8      68 ..     118     174 ..     112     178 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2
      PAP2_C 32 lkvillllallglfli 47
                 +++ + ++llgl+l+
  KIR64589.1 36 AHFTEWSIVLLGLLLV 51
                4555555555555544 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.3e-05
      PAP2_C   8 SGHtvvltlavlfileyspkklailkvillllallglfliiasrkHYtvDVllglyittlv 68 
                 S H+++   ++ +i+  sp+      + ++ la+l  f+ +    HY  DVl gl++  lv
  KIR64589.1 118 SNHSTIAGALATAIVLLSPRLA----WYAVPLAVLAAFSRVFVGVHYPHDVLAGLLLGALV 174
                 6677777777888888888776....89999999999999999************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1518.17
//
Query:       KIR64590.1  [L=163]
Description: hypothetical protein TK50_02760 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.13   12.8   0.1        1.1    9.8   0.1    2.1  1  Zn_ribbon_recom  Recombinase zinc beta ribbon domain
       0.38   10.9   2.7        1.9    8.6   0.1    2.6  2  Zn-ribbon_8      Zinc ribbon domain


Domain annotation for each model (and alignments):
>> Zn_ribbon_recom  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00012       1.1       8      54 ..      65     145 ..      65     148 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00012
  Zn_ribbon_recom   8 CgeCGspmtr...........rkrkgkr..........................hyYrCstyrrkgk..kCsnhsireekleeavl 54 
                      C +CG++mt            +     +                          h+  C+t + + +  kC n+ +  e+le++v+
       KIR64590.1  65 CPKCGRRMTWldivssalhgvH-----DpamiarvilgdrryvntevpdaipgvHCVDCRTPIDGLRsfKCHNWAYAFEALEDVVE 145
                      9999999988777665553331.....02222333333335688889999999999999999999886779999999999999886 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00022       1.9      25      35 ..      61      71 ..      55      73 .. 0.74
   2 ?    1.5   0.3     0.036   3.2e+02       7      22 ..     114     129 ..     112     148 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00022
  Zn-ribbon_8 25 pltaCPeCgse 35
                 ++++CP+Cg +
   KIR64590.1 61 DEPDCPKCGRR 71
                 3678****985 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.036
  Zn-ribbon_8   7 rCeeCghefevlqsis 22 
                  +C +C +  + l+s++
   KIR64590.1 114 HCVDCRTPIDGLRSFK 129
                  5777777777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1159.91
//
Query:       KIR64591.1  [L=85]
Description: hypothetical protein TK50_02765 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 693.28
//
Query:       KIR64592.1  [L=178]
Description: hypothetical protein TK50_02770 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.17   11.8   0.0    1.3  1  UPF0146   Uncharacterised protein family (UPF0146)


Domain annotation for each model (and alignments):
>> UPF0146  Uncharacterised protein family (UPF0146)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.5e-06      0.17      29      94 ..      11      77 ..       7      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.5e-06
                HHHHHHHS-EEEEE-SS-S.....STTEE---SSS--HHHHTTEEEEEEES--TTSHHHHHHHHHHH CS
     UPF0146 29 aealakrgvdlvatDikekkak.egvrivrDDvtdPnleiYkgadliYslRpPaelqsaildvakkv 94
                a  l+ r  +l+ +D+  +++  + v  + D       ++Y+ a+ +  l pP   q++++dva + 
  KIR64592.1 11 AGDLSDRLAALTFVDLTTERVTeLLVDTIADWGAAQGWRVYRRAASVVPLPPPMSGQQSVVDVACAR 77
                66788888899999999999885678888888888999*************************9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1303.48
//
Query:       KIR64593.1  [L=510]
Description: serine/threonine protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-45  154.2   0.0    5.8e-45  153.7   0.0    1.1  1  Pkinase         Protein kinase domain
    4.6e-27   94.9   0.0    5.7e-27   94.6   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    2.6e-09   37.4   1.6     0.0017   18.4   0.0    2.3  2  APH             Phosphotransferase enzyme family
     0.0012   18.3   0.0     0.0024   17.3   0.0    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
       0.01   15.4   0.0      0.051   13.2   0.0    1.8  2  RIO1            RIO1 family
      0.014   15.5   0.0      0.025   14.7   0.0    1.3  1  ABC1            ABC1 family
      0.018   13.8   0.0      0.027   13.2   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.7   0.0   2.3e-48   5.8e-45       1     259 [.      16     265 ..      16     267 .. 0.93

  Alignments for each domain:
  == domain 1  score: 153.7 bits;  conditional E-value: 2.3e-48
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 ye l +lG G++G+V+ a+ + +g+ vAvK+++ e a ++    ++++E++  +++      +++++  ++d  ylv+eyveg +la+ll+++g l  +
  KIR64593.1  16 YELLGRLGDGGMGSVFLAR-SPQGRRVAVKVVRPELAHDDVFrARFRSEVNRARQVPPFCTAEVLDADPDHDPPYLVVEYVEGPSLAQLLREHGPLGAA 113
                 678899*************.7*************9988776669*************99999************************************* PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHH...TTSCBSHHHHHHHHHHHHHHHH CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...ltsfvgtseYlAPEvl...keneyskkvDvWslGvilyell 191
                 ++ +ia  ++++l  +H +g+iHrDlKp+N+L+   g ++++DFG+a+ +e +s+   +++ vgt  Y+APE l   ++++ ++++D+++ G +++   
  KIR64593.1 114 QLHSIAVGVATALTAIHGAGVIHRDLKPANVLVA-PGGIRVIDFGIARAFEATSQhtrTNQLVGTVSYMAPERLdtsSGKPAGPAADIFAWGALVAHAA 211
                 **********************************.***************99999999****************99888999***************** PP

                 HSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase 192 tgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeell 259
                 tg++pf g++ ++ + ++l+q               p    +   +++l+++ l+kdp  R+ta+ell
  KIR64593.1 212 TGRNPFGGDSATSIAMRILTQ--------------PPDLAGLGGPLRELVSRALEKDPAARPTARELL 265
                 *******77776644444444..............7889999***********************998 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   2.2e-30   5.7e-27       4     257 ..      19     266 ..      16     268 .. 0.93

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 2.2e-30
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                    +lG G  G+V+ ++       +  +VavK+++ e  +++  ++++ +e++  +++      ++l +  +++p ++v+eyv+g +L + Lr++   +
   KIR64593.1  19 LGRLGDGGMGSVFLARSP-----QGRRVAVKVVRPELAHDDvfRARFRSEVNRARQVPPFCTAEVLDADPDHDPPYLVVEYVEGPSLAQLLREH--GP 109
                  5689**********9999.....899*******998888877799************9999********************************9..9* PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE...EEHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk...ftsksDvWsfGvl 194
                  l   +l s+a+ vA ++  ++   ++Hrdl   NvL++    +++ DfG+ar+ e +++ +++++    v +mapE l++++      ++D++++G l
   KIR64593.1 110 LGAAQLHSIAVGVATALTAIHGAGVIHRDLKPANVLVA-PGGIRVIDFGIARAFEATSQHTRTNQLVGTVSYMAPERLDTSSgkpAGPAADIFAWGAL 206
                  *************************************9.7889************************************9997778899********* PP

                  HHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 195 lwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  +   +t g++p+ g ++++++ ++ +  + +  +     l el+++ +e+dp+ Rpt +el++
   KIR64593.1 207 VAHAAT-GRNPFGGDSATSIAMRILT--QPPDLAGLGGPLRELVSRALEKDPAARPTARELLD 266
                  **9999.*******999999888754..56777788899******************999876 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   1.3     1e-06    0.0027      13     108 ..      30     132 ..      21     134 .. 0.80
   2 !   18.4   0.0   6.5e-07    0.0017     167     197 ..     133     160 ..     132     163 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1e-06
                 EEEEEETT.--EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS......HHHHHHHHHHHHHHHHH CS
         APH  13 tylvttpa.gryvlrrnppa..raaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr......klsaaqlpellealgef 101
                 ++l  +p+ +r+++++++p+  + + + +r+  +    ++ ++  ++evl+   d ++ + +++++eyv+g sl++      +l aaql  ++  ++ +
  KIR64593.1  30 VFLARSPQgRRVAVKVVRPElaHDDVFRARFRSEVNRARQVPPfCTAEVLD--ADPDHDP-PYLVVEYVEGPSLAQllrehgPLGAAQLHSIAVGVATA 125
                 7888999978**********5555555555555555555554464668888..6777777.9************************************* PP

                 HCCHHCH CS
         APH 102 laalhqv 108
                 l a+h +
  KIR64593.1 126 LTAIHGA 132
                 *****87 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 6.5e-07
                 EEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 167 vllHgDlhpgNllvdpddgrvtGviDfedag 197
                 +++H+Dl+p N+lv p++ r   viDf+ a+
  KIR64593.1 133 GVIHRDLKPANVLVAPGGIR---VIDFGIAR 160
                 689************88888...8***9886 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   9.2e-07    0.0024      94     167 ..      90     157 ..      69     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 9.2e-07
         Kdo  94 llterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 l++e +eg  +L++ll+++  l+ +  + +   v+++   +h agv H+dl + n+l+  ++     i +iD+ 
  KIR64593.1  90 LVVEYVEG-PSLAQLLREHGPLGAAQLHSIAVGVATALTAIHGAGVIHRDLKPANVLVAPGG-----IRVIDFG 157
                 67777777.489999999777888888888999999************************99.....9999996 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.29   7.3e+02       2      23 ..      30      51 ..      29      69 .. 0.78
   2 ?   13.2   0.0     2e-05     0.051      83     150 ..      90     157 ..      85     171 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.29
                EEEEEETTTEEEEEEEE-S--- CS
        RIO1  2 VyhavsedgkevaiKiyktstt 23
                V+ a+s +g+ va+K+ + +++
  KIR64593.1 30 VFLARSPQGRRVAVKVVRPELA 51
                999*************987654 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2e-05
                 EEEE--EETTEEGGBHHHCG..-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTEEEE--GT CS
        RIO1  83 lvmefigedgvaapklkdve..e.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvdedkvviIDvs 150
                 lv e+++  g  +++l   +     +++++++  v      +++ ag++H DL   Nvlv  +++ +ID++
  KIR64593.1  90 LVVEYVE--GPSLAQLLREHgpLgAAQLHSIAVGVAT-ALTAIHGAGVIHRDLKPANVLVAPGGIRVIDFG 157
                 6777777..5555555444422245555555555555.566677*************************96 PP

>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   9.8e-06     0.025      23      49 ..      26      52 ..      21      61 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.8e-06
        ABC1 23 SiaqVhrAklksgeeVavKvqrpgvkk 49
                 ++ V+ A+ ++g++VavKv rp++++
  KIR64593.1 26 GMGSVFLARSPQGRRVAVKVVRPELAH 52
                6899********************986 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.1e-05     0.027     318     387 ..     125     187 ..     114     193 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
  Pkinase_fungal 318 ghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlk 387
                     ++   +  ag++HrD    N+l+            +iD+ +a   + +s++   ++ +GT+ +ma e l 
      KIR64593.1 125 ALTAIH-GAGVIHRDLKPANVLVA------PGGIRVIDFGIARAFEATSQHTRTNQLVGTVSYMAPERLD 187
                     566667.89***************......56677************9*****************88775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3766.12
//
Query:       KIR64594.1  [L=138]
Description: hypothetical protein TK50_02785 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-08   34.2   5.7    2.5e-08   34.2   5.7    1.6  2  HTH_31    Helix-turn-helix domain
    2.5e-06   27.4   0.0    4.4e-06   26.7   0.0    1.3  1  HTH_3     Helix-turn-helix
    4.7e-06   27.0   0.0    7.8e-06   26.2   0.0    1.3  1  HTH_26    Cro/C1-type HTH DNA-binding domain
     0.0096   15.9   0.0      0.031   14.2   0.0    1.8  2  HTH_37    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.5   1.5        4.5    7.1   0.0    3.0  3  HTH_IclR  IclR helix-turn-helix domain
      0.027   14.5   0.0      0.039   14.0   0.0    1.2  1  HTH_19    Helix-turn-helix domain
      0.049   13.5   2.1       0.11   12.3   2.1    1.6  1  SH3_4     Bacterial SH3 domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   5.7   9.6e-12   2.5e-08       5      64 .]      24      82 ..      22      82 .. 0.92
   2 ?   -3.3   0.0       4.8   1.2e+04      38      51 ..      97     109 ..      95     110 .. 0.64

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 9.6e-12
      HTH_31  5 lLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerael 64
                ++r+   ++G++ ee+ +r+g+ ++t+ rl  Grr+ p+ +v++ala+al+ d  e ++l
  KIR64594.1 24 RVRHEQGARGWTDEELRARTGIARTTVDRLRGGRRP-PTARVVNALADALDIDLTEAHRL 82
                567777899**************************7.****************9997765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.8
      HTH_31  38 rrgrpspavleala 51 
                 +   p+ ++ ea++
  KIR64594.1  97 EG-TPRVSAREAIL 109
                 55.47777777776 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.7e-09   4.4e-06       7      54 ..      31      78 ..      29      78 .. 0.96

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.7e-09
                HTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHH CS
       HTH_3  7 qlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvslde 54
                ++g++ eeL +++G+ r+t+ r+  G+r P+ +++ +la+aL+++l+e
  KIR64594.1 31 ARGWTDEELRARTGIARTTVDRLRGGRRPPTARVVNALADALDIDLTE 78
                68*******************************************986 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   3.1e-09   7.8e-06       8      55 ..      31      77 ..      25      79 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 3.1e-09
      HTH_26  8 drgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpg 55
                +rg t  eL+ +tgi ++t++rl+ g+ + +++ + ++++daL++++ 
  KIR64594.1 31 ARGWTDEELRARTGIARTTVDRLRGGR-RPPTARVVNALADALDIDLT 77
                699999********************9.79999***********9986 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.2e-05     0.031      20      55 ..      22      57 ..      19      77 .. 0.89
   2 ?   -0.8   0.0      0.61   1.6e+03      20      41 ..      62      83 ..      57      86 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
                HHHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT- CS
      HTH_37 20 alaiaeliekrelsqseaaqllgiaqPkvsrllrgk 55
                +++++  + +r+++++e+ +++gia+  v+rl+ g+
  KIR64594.1 22 WWRVRHEQGARGWTDEELRARTGIARTTVDRLRGGR 57
                789999999***********************9665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.61
                HHHHHHHHHHCT--HHHHHHHH CS
      HTH_37 20 alaiaeliekrelsqseaaqll 41
                a+ +++l +++++  +ea++l 
  KIR64594.1 62 ARVVNALADALDIDLTEAHRLA 83
                6678888888888888888876 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0018       4.5      17      38 ..      32      53 ..      28      54 .. 0.84
   2 ?    4.9   0.0    0.0088        22      21      38 ..      65      82 ..      56      84 .. 0.88
   3 ?    0.7   0.0      0.18   4.6e+02       6      17 ..     123     134 ..     122     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0018
                SS-BHHHHHHHHTS-HHHHHHH CS
    HTH_IclR 17 qeltlselArrtglpkStvhRl 38
                +++t  el +rtg++++tv Rl
  KIR64594.1 32 RGWTDEELRARTGIARTTVDRL 53
                556677999**********998 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0088
                HHHHHHHHTS-HHHHHHH CS
    HTH_IclR 21 lselArrtglpkStvhRl 38
                +  lA+++++  + +hRl
  KIR64594.1 65 VNALADALDIDLTEAHRL 82
                5789*************9 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.18
                 HHHHCT-CTTBS CS
    HTH_IclR   6 laiLdalaeapq 17 
                 l++Ld++++a++
  KIR64594.1 123 LDLLDIFEQANR 134
                 89*****99987 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.5e-05     0.039      10      58 ..      31      78 ..      24      84 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
      HTH_19 10 elgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidley 58
                 +g+t eel  r+gi r+    + +g++  p+a++++++a al+idl++
  KIR64594.1 31 ARGWTDEELRARTGIARTTVDRLRGGRR-PPTARVVNALADALDIDLTE 78
                59**************************.999**************875 PP

>> SH3_4  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.1   4.4e-05      0.11      33      49 ..      19      35 ..      14      39 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.4e-05
       SH3_4 33 kgnWcrvrDadGatGWi 49
                ++ W rvr+ +Ga+GW 
  KIR64594.1 19 YDFWWRVRHEQGARGWT 35
                677*************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 915.33
//
Query:       KIR64595.1  [L=149]
Description: hypothetical protein TK50_02800 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1124.47
//
Query:       KIR64596.1  [L=97]
Description: hypothetical protein TK50_02805 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-19   70.4   0.0    1.6e-19   70.2   0.0    1.0  1  DALR_1    DALR anticodon binding domain


Domain annotation for each model (and alignments):
>> DALR_1  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.0   8.8e-24   1.6e-19       1      87 [.      12      95 ..      12      97 .] 0.89

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 8.8e-24
                HHHHHHHHHHHHHHTTCTTCCCCHCCHCCS-SHHHHHHHHHHHTHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHCTSTTSCTH CS
      DALR_1  1 vqyahaRiksilrkaeeegekleeealalleeeeekeLlkalaqfpevleeaaeelephklaeylyeLaatfhkfYnkervlkeeee 87
                +qyahaRi+si+r+a+  +++   +  ++ ++++e +L+ +l +f  v++++ ++le h+la yl++Laatf+ fY++++vl  ++ 
  KIR64596.1 12 LQYAHARIRSIFRRAGIGQPTV--APISI-THPAEHALALELVNFGAVVADVEQSLEFHRLAGYLHTLAATFSGFYEHCPVLRGQRS 95
                6************999877544..44444.89*************************************************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 647.04
//
Query:       KIR64597.1  [L=161]
Description: hypothetical protein TK50_02815 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1393.83
//
Query:       KIR64598.1  [L=81]
Description: hypothetical protein TK50_02820 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 602.72
//
Query:       KIR64599.1  [L=312]
Description: hypothetical protein TK50_02825 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-49  166.6   0.0    1.1e-48  165.9   0.0    1.2  1  Replic_Relax  Replication-relaxation


Domain annotation for each model (and alignments):
>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.9   0.0   5.9e-53   1.1e-48       1     183 [.      26     225 ..      26     228 .. 0.92

  Alignments for each domain:
  == domain 1  score: 165.9 bits;  conditional E-value: 5.9e-53
  Replic_Relax   1 LrlLaehrvlTtrqiarllfashratarrrLarLrelgllsrlrkrvggarggsepyvYaLtpkGarllaaqra..epeprskrdrrereassrflp 95 
                   L +L++h+vlTt+qia++lf+s +  ++rrL rL+ l++++r+r++  + +ggs+py+Y+L+++G+++++aqr+  +p+++++r+r+++++ +++lp
    KIR64599.1  26 LGWLYDHGVLTTDQIAAALFPSLDF-TQRRLLRLTVLRAVDRFRPN--RPDGGSYPYHYVLDQLGYDHVHAQRGlgPPRRDQARRRKQSLTARPDLP 119
                   89***********************.********************..88999**********************99999***************** PP

  Replic_Relax  96 HtlavnelflalaaaaRetpdaalteWr.esa..ktkafgk..........kaktllkPDaflsweedg....fflEvDtgteslktlvrKirkYee 175
                   H+l+ n++f++laa+aR +pd+ l++W+  sa  +++ f +          + ++l +PD++++w+e+g    fflE+Dtg+e l  l +Ki kYe+
    KIR64599.1 120 HLLGGNQVFIDLAAHARIHPDTVLDRWQpASAfhDPGVFYRhggnpqimvhGPTGLPRPDGAGVWTEHGrsvpFFLEYDTGSERLDILTAKIAKYER 216
                   ****************************75541044444449*********99**************889*************************** PP

  Replic_Relax 176 lae.sgveq 183
                   l++ s +++
    KIR64599.1 217 LYAmSTWAW 225
                   **9555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2305.31
//
Query:       KIR64600.1  [L=275]
Description: hypothetical protein TK50_02830 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-10   41.4   9.0    1.3e-10   41.4   9.0    1.8  2  DUF2637   Protein of unknown function (DUF2637)
  ------ inclusion threshold ------
        5.9    7.4   8.0         14    6.3   0.0    2.7  3  DUF4231   Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> DUF2637  Protein of unknown function (DUF2637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   1.4e-14   1.3e-10       2     113 ..      26     138 ..      25     151 .. 0.90
   2 ?   -1.9   0.5      0.31   2.8e+03     144     144 ..     225     225 ..     173     264 .. 0.58

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1.4e-14
     DUF2637   2 aaaifvlivaviafvlSFaalrdlAqkaglsealawlfPltvDglivaatllalaaslrgrsalllrllawllvalsswiNgieatdvtlkvvaaalsl 100
                 + +++ l+++++a ++SF++++d+A  +g++++law+  ++++ + +aa+l   ++++  +s + + ++++++v+ls++  + ea+++  + +aaal+ 
  KIR64600.1  26 VQVLIMLLIGGAAGAASFRHVHDVAAGHGQPGWLAWADAVVLELTSIAAGLELRRNRRLAKSVTFPAAVLAAAVLLSLAAQVVEAEPSVIGWIAAALPA 124
                 568999*******************************************************************************99999999999997 PP

     DUF2637 101 aanvaf.elvlaaa 113
                  + +a+ +++l++a
  KIR64600.1 125 LGFLAMvKIALGRA 138
                 77766514555555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.31
     DUF2637 144 t 144
                  
  KIR64600.1 225 A 225
                 1 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0015        14      15      67 ..      24      80 ..      14      84 .. 0.69
   2 ?    5.1   1.9    0.0034        31      16      58 ..      84     127 ..      77     135 .. 0.62
   3 ?   -2.2   0.0      0.63   5.7e+03      27      27 ..     234     234 ..     212     266 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0015
     DUF4231 15 rrfrllrlitivlgallpilvs......sklgagvsvlkiltallsalvailaaleeff 67
                +r+ +l +++i ++a ++             + +  +l+++ a++  l++i a+le  +
  KIR64600.1 24 NRVQVLIMLLIGGAAGAAS--FrhvhdvAAGHGQPGWLAWADAVVLELTSIAAGLELRR 80
                4555444444444444444..335988855677899******************99876 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0034
     DUF4231  16 rfrllrlitivlgallpilvs.....sklgagvsvlkiltallsalva 58 
                 +++++ + ++vl+a +          +  +a+ sv+ +++a+l al  
  KIR64600.1  84 LAKSVTFPAAVLAAAV----LlslaaQVVEAEPSVIGWIAAALPALGF 127
                 4444333333333222....1233457999*************99865 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.63
     DUF4231  27 l 27 
                 +
  KIR64600.1 234 G 234
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 1752.51
//
Query:       KIR64601.1  [L=466]
Description: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-42  145.0   0.0    3.7e-42  144.5   0.0    1.2  1  Mur_ligase_M  Mur ligase middle domain
      1e-18   67.3   0.7      1e-17   64.1   0.1    2.7  3  Mur_ligase_C  Mur ligase family, glutamate ligase domain
    3.1e-11   43.4   0.3    1.7e-10   41.1   0.1    2.4  2  Mur_ligase    Mur ligase family, catalytic domain
  ------ inclusion threshold ------
        4.7    7.2   6.6        7.3    6.6   2.4    3.3  2  FIST          FIST N domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5   0.0   8.2e-46   3.7e-42       1     192 []     107     297 ..     107     297 .. 0.95

  Alignments for each domain:
  == domain 1  score: 144.5 bits;  conditional E-value: 8.2e-46
                   EESSS-HHHHHHHHHHHHHCTEEEEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHC.TTTCCHCBESEEEE---TSTTHHHHSSHHHHHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvgttnneiglpktlaemekkeaeyavlEvsshglge.krlegllkpdvavitnispdHldfhgtlenyae 96 
                   vTG+ GKT+t++++a++l + g++++   + nne+glp t+++++  +++y+vlE++++g+g+ + l  +++p+v v+t ++++Hl+++g++en+a+
    KIR64601.1 107 VTGSVGKTSTKDILAQVLPTWGETVANRASNNNELGLPYTVTRATA-DTRYLVLEMGARGIGHvAYLTRIAPPTVSVVTRVGHAHLGEFGSVENIAQ 202
                   9*********************************************.************************************************** PP

                   HHHHHHHTSETTC...EEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEEEEEEETTEEEE.EEEEETTEEEEEEESSCSCHHHHHHHHHH CS
  Mur_ligase_M  97 aKaelferlkeeg...iavinaddpyakelikklkkakvkvvtfglekeaedlraknieeksegtei.ellevkggeleieipllGkhnvyNalaai 189
                   aK e++e l++ +   +av+nadd     +++++++++++v+t+g+e+ a d+ra+ +++++ g    +l+ ++g+ +e++++l G h+++Nalaa+
    KIR64601.1 203 AKGEIVEALPDAQgggLAVLNADDA---LVAAMASRTSARVLTYGIESPA-DVRAEGVTVDELGRAGfRLT-YDGQAAEVRLRLYGLHQASNALAAA 294
                   **********987889*********...999999999999*********9.79***999988888762444.7***********************9 PP

                   HHH CS
  Mur_ligase_M 190 aaa 192
                    +a
    KIR64601.1 295 TVA 297
                   885 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.4   6.1e+03      25      52 ..      86     113 ..      83     123 .. 0.70
   2 ?   -0.5   0.0      0.35   1.6e+03      59      82 ..     224     247 ..     219     254 .. 0.84
   3 !   64.1   0.1   2.3e-21     1e-17       2      78 ..     319     398 ..     318     410 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.4
                   HHHHHHHHHHHHHSSSSEEEEEEEESTT CS
  Mur_ligase_C  25 dslsaalkalreiapdkrlilvfgpgge 52 
                   +++  + +a+ +  p+  +i v g+ g 
    KIR64601.1  86 AAYGRLARAVVDRLPQTTVIGVTGSVGK 113
                   5556666777777789999999998777 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.35
                   CTHHHHHHHHCCHSSEEEEEESS- CS
  Mur_ligase_C  59 tfhdefgrlasaladslvvlgdyp 82 
                   +++++++++as+  ++++++g+++
    KIR64601.1 224 ADDALVAAMASRTSARVLTYGIES 247
                   567899******9999*9999875 PP

  == domain 3  score: 64.1 bits;  conditional E-value: 2.3e-21
                   TTSSEEEEETTTEEEEEE.T--SHHHHHHHHHHHHHHSS.SSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSE.EEEE CS
  Mur_ligase_C   2 kgRlevvgeadgvtvidD.yahnpdslsaalkalreiap.dkrlilvfgpggelgertrtfhdefgrlasalads.lvvl 78 
                   +gR++v+++adgvt+i+D y++ pd+++aal+al ++    +r ++v+g+++elge +++ h e+g+  +++ +  lv +
    KIR64601.1 319 PGRMQVTTRADGVTIINDaYNAAPDAMRAALRALHTMTGdGRRAVAVLGEMAELGEHAAQVHREIGQQVAEIGAGwLVAI 398
                   8*********************************9887778889**********************98888776655555 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.1   3.8e-14   1.7e-10       6      66 ..      31      94 ..      29     105 .. 0.80
   2 ?   -3.5   0.0       3.1   1.4e+04      61      85 ..     209     233 ..     197     235 .. 0.68

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 3.8e-14
                STTSCCHHHHHHHHHHTTSEEEEEESSHCHHHTT-EEEES-HGGGG..EE-T.S-TTCHHHHHH CS
  Mur_ligase  6 gidgrgmsagalflalkGykvdGsdfieslialGaaavvghdaani..vvss.iskdnpeleaa 66
                  d+r +++g +++al+G++vdG+df++++i++Gaa v+++++  +  vv + +++    l++a
  KIR64601.1 31 VFDSRRVEPGGMYVALPGERVDGHDFAAQAIEAGAAGVLASRPVGVpaVVVEdVPAAYGRLARA 94
                579****************************************966664444455554444444 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.1
                 HHHHHHHHTTEEEEEHHHHHHHHHH CS
  Mur_ligase  61 peleaakepgipvesraeaLaelaa 85 
                 + l+ a+  g+ v +  +aL + +a
  KIR64601.1 209 EALPDAQGGGLAVLNADDALVAAMA 233
                 4556666777778888888777766 PP

>> FIST  FIST N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2     0.076   3.4e+02     102     138 ..      12      50 ..       5      82 .. 0.60
   2 ?    6.6   2.4    0.0016       7.3      13      59 ..      87     143 ..      78     456 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.076
        FIST 102 ivGGlagdgtlaf....ktyvlfnggvledgvvvvllsges 138
                 +vGG   d+   +    +++v+f+++ +e g  +v+l+ge 
  KIR64601.1  12 VVGGAVHDAP--GavtvTAPVVFDSRRVEPGGMYVALPGER 50 
                 7999777773..24687688999666666777777765553 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0016
        FIST  13 dleallealrealpgapliGcstageiasegleledgvvalalasa..........d 59 
                  + +l++a+ ++lp++++iG +++ + +s++ +l + ++ ++ ++a           
  KIR64601.1  87 AYGRLARAVVDRLPQTTVIGVTGSVGKTSTKDILAQVLPTWGETVAnrasnnnelgL 143
                 467999**************9999988766777888887777766655444443330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3432.19
//
Query:       KIR64602.1  [L=481]
Description: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-21   74.8   0.6    1.4e-20   73.4   0.2    2.0  2  Mur_ligase    Mur ligase family, catalytic domain
    2.9e-18   66.6   0.0    4.1e-18   66.1   0.0    1.2  1  Mur_ligase_M  Mur ligase middle domain
    2.9e-13   49.9   0.7    1.7e-12   47.4   0.2    2.5  3  Mur_ligase_C  Mur ligase family, glutamate ligase domain


Domain annotation for each model (and alignments):
>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.2   2.3e-24   1.4e-20       3      85 ..      24     117 ..      23     120 .. 0.95
   2 ?   -3.9   0.0         3   1.8e+04      49      63 ..     188     202 ..     180     205 .. 0.73

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 2.3e-24
                 EEESTTSCCHHHHHHHHHHTTSEEEEEESSHC.....HHHTT-EEEES-HGGGG......EE-TS-TTCHHHHHHHHTTEEEEEHHHHHHHHHH CS
  Mur_ligase   3 hfigidgrgmsagalflalkGykvdGsdfies.....lialGaaavvghdaani......vvssiskdnpeleaakepgipvesraeaLaelaa 85 
                 hf+g++g+ ms++a++la  G++v+Gsd+ +s     l+ +Ga + +ghd ++i      v++++ ++ pe+ aa++ gipv++ra++L +la 
  KIR64602.1  24 HFVGVGGSAMSGLARLLAELGHQVSGSDVQDSdrlaaLRTAGAFVRLGHDGSHIegascvVYTTVARNTPEVRAARAAGIPVVHRAQVLDKLAV 117
                 9**********************************************************66666***************************996 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3
                 GGG.EE-TS-TTCHHH CS
  Mur_ligase  49 ani.vvssiskdnpel 63 
                 + i vv+++ +d+pe+
  KIR64602.1 188 S-IaVVTNVTDDHPEN 202
                 3.24888899999985 PP

>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   6.9e-22   4.1e-18       1     192 []     124     308 ..     124     308 .. 0.89

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 6.9e-22
                   EESSS-HHHHHHHHHHHHHCTEE.EEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHCTTTCCHCBESEEEE---TSTTHHHHSSHHHHHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagk.vigtvgttnneiglpktlaemekkeaeyavlEvsshglgekrlegllkpdvavitnispdHldfhgtlenyae 96 
                   v G++GK+Tt+ ++a++l++ g+  + ++g    +++ p + a++ +   +++v E+ ++    +r   +l p +av+tn++ dH +++ +  ++++
    KIR64602.1 124 VSGSHGKSTTAGVLAHVLRTLGEdPTYLIGA---DLTGPGSGAHLGR--SKLLVAEADES----DRSFHFLTPSIAVVTNVTDDHPENFVSHADVLR 211
                   89*******************6559*****7...7888888888888..9**********....6666669************************** PP

                   HHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTC..EEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEEEEESSCSCHHHHHHHHHHHH CS
  Mur_ligase_M  97 aKaelferlkeegiavinaddpyakelikklkkakvk..vvtfglekeaedlraknieeksegteiellevkggeleieipllGkhnvyNalaaiaa 191
                   a   +  r+ ++g++++nad   a+  ++ +++++ +  v+++g +  a d+r  +++++  + + ++  ++g e+ +++p +  h + Na+aa+a+
    KIR64602.1 212 AYVGFGCRIAPDGFLIVNADCVGATVAAQVIADERPDltVLRYGRDRTA-DVRLLDVHADGWSASATVRMPNGTEVRLTLPTPAAHHLDNAAAALAC 307
                   ********************9976666666666655555*********9.79999****999999988866999999******************98 PP

                   H CS
  Mur_ligase_M 192 a 192
                   a
    KIR64602.1 308 A 308
                   6 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.94   5.6e+03      33      52 ..     111     128 ..     107     143 .. 0.72
   2 ?   -2.6   0.0       1.1   6.7e+03      43      69 ..     169     191 ..     163     196 .. 0.69
   3 !   47.4   0.2   2.9e-16   1.7e-12       1      80 [.     328     404 ..     328     410 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.94
                   HHHHHSSSSEEEEEEEESTT CS
  Mur_ligase_C  33 alreiapdkrlilvfgpgge 52 
                   +l ++a  +rl++v g+  +
    KIR64602.1 111 VLDKLAVGRRLVAVSGS--H 128
                   55566667899999998..4 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.1
                   EEEEEEESTT.CCSCHCTHHHHHHHHC CS
  Mur_ligase_C  43 lilvfgpggelgertrtfhdefgrlas 69 
                   ++lv+   +e    +r+fh++ + +a+
    KIR64602.1 169 KLLVAE-ADE---SDRSFHFLTPSIAV 191
                   444444.455...99999999988886 PP

  == domain 3  score: 47.4 bits;  conditional E-value: 2.9e-16
                   CTTSSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEEES CS
  Mur_ligase_C   1 vkgRlevvgeadgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvvlgd 80 
                   v++R+e +++  gvtvid ya++p ++ a l+a+r++a  +r+++vf+p g+   r  +f +++gr++++ ad +++l++
    KIR64602.1 328 VRRRFEHIDTRAGVTVIDSYADHPNEIAADLDAARTLA-RGRVLVVFQPSGH--ARVLAFGERIGRILADNADHILLLDV 404
                   78***********************************6.69***********..****************7777888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3467.19
//
Query:       KIR64603.1  [L=464]
Description: hypothetical protein TK50_02855 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3401.25
//
Query:       KIR64604.1  [L=367]
Description: hypothetical protein TK50_02860 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0005   20.1   0.0     0.0009   19.2   0.0    1.4  1  AAA_5         AAA domain (dynein-related subfamily)
      0.003   17.5   0.0     0.0044   17.0   0.0    1.2  1  Rad17         Rad17 P-loop domain
     0.0042   17.5   0.0     0.0071   16.7   0.0    1.5  1  AAA_16        AAA ATPase domain
     0.0068   16.3   0.0      0.012   15.6   0.0    1.3  1  RsgA_GTPase   RsgA GTPase
      0.008   15.6   0.0      0.014   14.8   0.0    1.4  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
     0.0084   16.4   0.0      0.015   15.6   0.0    1.4  1  AAA_22        AAA domain
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.028   14.1   0.0    1.2  1  AAA_30        AAA domain
      0.035   13.6   0.0      0.051   13.0   0.0    1.2  1  PhoH          PhoH-like protein
      0.059   13.9   0.0        0.1   13.1   0.0    1.5  1  AAA_18        AAA domain
       0.12   12.9   0.0       0.18   12.3   0.0    1.3  1  ABC_tran      ABC transporter
       0.13   12.0   0.1       0.27   11.0   0.1    1.4  1  AAA_29        P-loop containing region of AAA domain
       0.15   12.5   0.0       0.25   11.8   0.0    1.3  1  AAA           ATPase family associated with various cellular 
       0.19   11.9   0.0       0.32   11.1   0.0    1.3  1  AAA_33        AAA domain
       0.24   11.1   0.0        0.4   10.4   0.0    1.2  1  PRK           Phosphoribulokinase / Uridine kinase family


Domain annotation for each model (and alignments):
>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   7.1e-07    0.0009       2      60 ..      42     101 ..      41     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 7.1e-07
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--.........---- CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreikngttslvdsplv 60 
                 +l  Gp+GtgKs+ a+ l+ ++   ++  ++   ++ t++edl+g++++     ++v++p++
  KIR64604.1  42 LLFAGPSGTGKSTAARVLSDFFsqsRCHAVIDTRPAWTSSEDLVGQYSV--FAGAFVNGPVT 101
                 6789******************9766666677778899**********8..56666666666 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.5e-06    0.0044      36      70 ..      33      64 ..      26      86 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.5e-06
       Rad17 36 kadvLesrkkriLLisGPsGCgkstvvkvLskelg 70
                 a +L  +    LL +GPsG gkst+ +vLs  ++
  KIR64604.1 33 LAASLGAQ---FLLFAGPSGTGKSTAARVLSDFFS 64
                55566555...9******************97665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.6e-06    0.0071      25      83 ..      40     102 ..      27     198 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.6e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdggif.lrgkcdqlesa....ipysalaqalareellr 83 
                 + +l+ G+sG+GKs+ +r l + ++++++++ +  +    +s+      ys++a a+ +  + +
  KIR64604.1  40 QFLLFAGPSGTGKSTAARVLSDFFSQSRCHAvI-DTRPAWTSSedlvGQYSVFAGAFVNGPVTQ 102
                 789******************999999766532.222222111123344566666665544444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     9e-06     0.012      87     120 ..      27      60 ..      17      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9e-06
                  HTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  87 kegleelkellkdktsvlvGqSGvGKStLinall 120
                  +++++ l++ l  ++ +++G+SG GKSt   +l 
   KIR64604.1  27 RTQIDLLAASLGAQFLLFAGPSGTGKSTAARVLS 60 
                  578999**********************888776 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-05     0.014      15      58 ..      32      75 ..      18      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
  Mg_chelatase 15 leiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealeva 58
                  l  a  G   ll++Gp+G+GK+  a+ l+  +++   + +++++
    KIR64604.1 32 LLAASLGAQFLLFAGPSGTGKSTAARVLSDFFSQSRCHAVIDTR 75
                  455777999*******************9999988887777765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.2e-05     0.015       4      43 ..      38      71 ..      35     128 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevv 43
                +a++l+  G+sGtGK+t +r l + + +       r + v
  KIR64604.1 38 GAQFLLFAGPSGTGKSTAARVLSDFFSQS------RCHAV 71
                5899******************9999754......44443 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.2e-05     0.028       6      63 ..      29      85 ..      26     128 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-05
      AAA_30  6 QaaavealltsgdrvavltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvLa 63
                Q ++++a l  g+++ +  Gp GtGK+ta ++l + + ++  + vi   p  + +++L 
  KIR64604.1 29 QIDLLAASL--GAQFLLFAGPSGTGKSTAARVLSDFFSQSrCHAVIDTRPAWTSSEDLV 85
                666665444..455999*****************9999985577777777766666655 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     4e-05     0.051      10      65 ..      30      84 ..      24     104 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4e-05
                HHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT--- CS
        PhoH 10 keylealkkndivfaiGpaGtGKtylavalavealkkkkvkriiltrpaveageel 65
                 ++l a    +++  +Gp+GtGK+  a +l  + +++++++ +i trpa ++ e+l
  KIR64604.1 30 IDLLAASLGAQFLLFAGPSGTGKSTAARVLS-DFFSQSRCHAVIDTRPAWTSSEDL 84
                5555555577889999********9887775.99****************998887 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.1e-05       0.1       3      20 ..      44      61 ..      42     113 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.1e-05
      AAA_18  3 ltGtpGvGKttlakeLsk 20
                 +G++G+GK+t a+ Ls+
  KIR64604.1 44 FAGPSGTGKSTAARVLSD 61
                79**************75 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00014      0.18      14      46 ..      42      74 ..      36     132 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
                EEEEESTTSSHHHHHHHHTTSS--SEEEEEETT CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkpteGeilldg 46
                + + G++G+GKSt +++l+   ++   +  +d 
  KIR64604.1 42 LLFAGPSGTGKSTAARVLSDFFSQSRCHAVIDT 74
                6789**************998887766666664 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00021      0.27      24      37 ..      41      54 ..      28      56 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
      AAA_29 24 atlltGpsGsGKST 37
                + l++GpsG+GKST
  KIR64604.1 41 FLLFAGPSGTGKST 54
                689**********9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00019      0.25       1      20 [.      42      61 ..      42      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
                EEEESSTTSSHHHHHHHHHH CS
         AAA  1 vllyGppGtGKTllakavak 20
                +l+ Gp GtGK+++a+ +  
  KIR64604.1 42 LLFAGPSGTGKSTAARVLSD 61
                699************99865 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00025      0.32       2      19 ..      42      59 ..      41      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
      AAA_33  2 vllvGlpGsGKstlaerl 19
                +l+ G++G+GKst a+ l
  KIR64604.1 42 LLFAGPSGTGKSTAARVL 59
                5899**********9965 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00032       0.4       5      32 ..      45      72 ..      42      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00032
         PRK  5 agsSGaGkttvarklekifgrekvkaae 32
                ag+SG Gk+t ar l + f +   +a+ 
  KIR64604.1 45 AGPSGTGKSTAARVLSDFFSQSRCHAVI 72
                8*******************99999664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2527.19
//
Query:       KIR64605.1  [L=404]
Description: hypothetical protein TK50_02900 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.096   13.0   0.0       0.18   12.1   0.0    1.3  1  kleA_kleC  Uncharacterized KorC regulated protein A


Domain annotation for each model (and alignments):
>> kleA_kleC  Uncharacterized KorC regulated protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     1e-05      0.18       7      33 ..     225     251 ..     221     267 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1e-05
   kleA_kleC   7 pWiDeLpevatdlvarRdkiAaklaeA 33 
                  W D+Lp+  t+l+a+R +iAa+l+ A
  KIR64605.1 225 RWPDLLPQLMTQLPAQRYRIAALLHPA 251
                 599*******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2719.41
//
Query:       KIR64606.1  [L=221]
Description: hypothetical protein TK50_02905 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       142  (0.00792013); expected 358.6 (0.02)
Passed bias filter:                      108  (0.00602376); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1583.27
//
Query:       KIR64607.1  [L=273]
Description: hypothetical protein TK50_02915 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-29  102.7   0.0    2.9e-29  102.3   0.0    1.1  1  ABC_tran      ABC transporter
    4.5e-13   49.7   0.1      3e-05   24.0   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    4.5e-08   32.8   0.0      0.006   16.0   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
    2.3e-06   28.1   0.3    4.9e-06   27.0   0.3    1.6  1  AAA_16        AAA ATPase domain
      1e-05   25.4   0.0     0.0011   18.7   0.0    2.0  2  AAA_15        AAA ATPase domain
    2.4e-05   24.0   0.0    5.8e-05   22.8   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
     0.0012   19.4   0.0     0.0018   18.8   0.0    1.1  1  AAA_23        AAA domain
     0.0013   19.0   0.1     0.0035   17.6   0.1    1.8  1  AAA_22        AAA domain
     0.0022   18.2   0.0     0.0045   17.3   0.0    1.5  1  AAA_28        AAA domain
     0.0031   17.7   0.0     0.0059   16.8   0.0    1.7  1  AAA_33        AAA domain
     0.0038   17.2   0.0      0.006   16.5   0.0    1.3  1  RsgA_GTPase   RsgA GTPase
     0.0043   16.8   0.0     0.0078   15.9   0.0    1.5  1  AAA_30        AAA domain
     0.0056   16.3   0.2      0.044   13.3   0.0    2.1  2  AAA_25        AAA domain
  ------ inclusion threshold ------
      0.014   15.4   0.1      0.064   13.3   0.0    1.9  2  AAA_5         AAA domain (dynein-related subfamily)
      0.016   15.1   0.0      0.024   14.5   0.0    1.3  1  ATPase_2      ATPase domain predominantly from Archaea
      0.018   14.6   0.0      0.046   13.3   0.0    1.6  2  AAA_27        AAA domain
      0.024   15.0   0.0      0.049   14.0   0.0    1.5  1  AAA           ATPase family associated with various cellular 
      0.035   14.0   0.0      0.082   12.8   0.0    1.6  2  NACHT         NACHT domain
      0.061   12.8   0.0      0.091   12.2   0.0    1.2  1  ParA          NUBPL iron-transfer P-loop NTPase
        0.1   12.2   0.0       0.22   11.1   0.0    1.5  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
       0.11   12.4   0.0       0.18   11.7   0.0    1.2  1  Rad17         Rad17 P-loop domain
       0.13   12.7   0.0        0.2   12.1   0.0    1.3  1  RNA_helicase  RNA helicase
       0.16   11.6   0.0       0.55    9.8   0.0    1.7  2  SRP54         SRP54-type protein, GTPase domain
        0.2   11.0   0.0       0.34   10.3   0.0    1.3  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.22   10.3   0.0       0.36    9.6   0.0    1.3  1  DUF2791       P-loop Domain of unknown function (DUF2791)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.0     4e-32   2.9e-29       2     136 ..      23     170 ..      22     171 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 4e-32
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................esde 83 
                 ++vsl + eg+ ++++G+nG+GKStLl+++a+ l+pteG++ + g+d++  +++++ + +g lpq  +   ++tv +                  ++++
  KIR64607.1  23 RDVSLRVAEGSFTVFIGPNGCGKSTLLRTVARVLRPTEGRVAVLGRDVRGYSRRQYARTVGLLPQGIEAPAGMTVTDLvlrgrhphrsplsrwtaQDEQ 121
                 689************************************************************************999**************9977777 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  ++ al+  g +++ d+++    ++LSgGq+qr  la++l+++ ++lllDEpt
  KIR64607.1 122 AVSSALDVTGTTGFGDRIL----AELSGGQRQRAWLAMLLAQDTPILLLDEPT 170
                 7******************....*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   4.2e-08     3e-05       1      24 [.      34      57 ..      34      78 .. 0.84
   2 !   23.9   0.0   4.4e-08   3.1e-05     230     295 ..     136     198 ..      82     203 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 4.2e-08
      AAA_21  1 lnvliGpNgsGKSnLLdaldllar 24
                ++v+iGpNg+GKS+LL++   + r
  KIR64607.1 34 FTVFIGPNGCGKSTLLRTVARVLR 57
                89***************9977654 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 4.4e-08
      AAA_21 230 qelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvilt 295
                 +++ ++elS G+++  a l++ll+++   ++ll+DEp + L+ + + ++l+ll +l+++g  v+++
  KIR64607.1 136 GDRILAELSGGQRQR-AWLAMLLAQDT--PILLLDEPTTYLDIAHQYEVLDLLADLHAGGRTVVAV 198
                 5666889********.********998..9****************************99999875 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   8.4e-06     0.006      23      48 ..      31      56 ..      22      67 .. 0.85
   2 !   15.1   0.0   1.6e-05     0.011     136     188 ..     142     190 ..      67     213 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.4e-06
                TSSEEEEEESTTSSHHHHHHHHHHHC CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 23 sksftaivGpNGSGKsnlldAilFvL 48
                + sft+ +GpNG+GKs ll  +  vL
  KIR64607.1 31 EGSFTVFIGPNGCGKSTLLRTVARVL 56
                568***************99887666 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.6e-05
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksk 188
                 +LSgG+++ + la+l+A    + +p+ llDe    LD ++  +v +ll   + 
  KIR64607.1 142 ELSGGQRQRAWLAMLLA----QDTPILLLDEPTTYLDIAHQYEVLDLLADLHA 190
                 79*************98....789******************99999987665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.3   6.8e-09   4.9e-06      18     117 ..      28     175 ..      17     217 .. 0.62

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 6.8e-09
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqalareellrqllde...............aesaeleawrek 100
                 rv++g  + ++++G+ G+GKs+l+r+++r l+ ++g + + g+ ++  s + y   a++    +ll q  ++               +  + l++w ++
  KIR64607.1  28 RVAEG--SFTVFIGPNGCGKSTLLRTVARVLRPTEGRVaVLGRDVRGYSRRQY---ARTV---GLLPQGIEApagmtvtdlvlrgrhPHRSPLSRWTAQ 118
                 55555..6899*****************9999997666566666666333333...3333...344444444444556666666777666699999999 PP

      AAA_16 101 leeala..............avpelagaea..........................s 117
                  e+a++              + +el+g ++                           
  KIR64607.1 119 DEQAVSsaldvtgttgfgdrILAELSGGQRqrawlamllaqdtpillldepttyldI 175
                 999999888888888888886666666666333333333333333334444444443 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.6e-06    0.0011      23      41 ..      31      50 ..      22      60 .. 0.80
   2 ?    4.8   0.0     0.028        20     322     352 ..     159     189 ..     140     199 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.6e-06
      AAA_15 23 ee.ltvliGkNnsGKSsile 41
                e  +tv+iG+N++GKS++l+
  KIR64607.1 31 EGsFTVFIGPNGCGKSTLLR 50
                4459**************97 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.028
      AAA_15 322 eknvilliEEPEahLHpqaqkvlikllkela 352
                 +++ ill++EP ++L + +q+++ +ll++l 
  KIR64607.1 159 QDTPILLLDEPTTYLDIAHQYEVLDLLADLH 189
                 46789**********************9985 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0     8e-08   5.8e-05      16      50 ..      26      60 ..      19      64 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 8e-08
      AAA_29 16 tieidlkg.atlltGpsGsGKSTllDAiqalLvpak 50
                ++++ + g +t+++Gp+G GKSTll  ++ +L p++
  KIR64607.1 26 SLRVAE-GsFTVFIGPNGCGKSTLLRTVARVLRPTE 60
                456664.459**********************9986 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.5e-06    0.0018      20      38 ..      33      51 ..      21      59 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.5e-06
      AAA_23 20 gltlItGpNGaGKTTildA 38
                 +t+++GpNG+GK+T+l+ 
  KIR64607.1 33 SFTVFIGPNGCGKSTLLRT 51
                589*************986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   4.9e-06    0.0035       5      38 ..      32      77 ..      28     203 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.9e-06
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaee................e 38
                 +++v +G+ G+GK+tllr++++ l      +e                +
  KIR64607.1 32 GSFTVFIGPNGCGKSTLLRTVARVLRP----TEgrvavlgrdvrgysrrQ 77
                6899*****************998732....2233455555555555553 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.3e-06    0.0045       3      48 ..      36      87 ..      34     105 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.3e-06
      AAA_28  3 vitGgestGKTtlleaLaar.....gypvv.pEaareileeklakgedalpw 48
                v++G+ ++GK+tll+  a+      g + v  + +r + + ++a++ + lp+
  KIR64607.1 36 VFIGPNGCGKSTLLRTVARVlrpteGRVAVlGRDVRGYSRRQYARTVGLLPQ 87
                9*****************6555666655444999999999999998877665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.2e-06    0.0059       3      32 ..      36      70 ..      34     197 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.2e-06
      AAA_33  3 llvGlpGsGKstlaerllkklg.....avllssdt 32
                +++G++G+GKstl++ +++ l      + +l  d+
  KIR64607.1 36 VFIGPNGCGKSTLLRTVARVLRptegrVAVLGRDV 70
                89***************988876666666666665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   8.4e-06     0.006      86     120 ..      18      53 ..       5      72 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.4e-06
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLinall 120
                  +++ +++++ ++++ +++v++G+ G GKStL+ +++
   KIR64607.1  18 RRTVCRDVSLRVAEgSFTVFIGPNGCGKSTLLRTVA 53 
                  5555566665565559****************9876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.1e-05    0.0078      18      53 ..      32      67 ..      24     129 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.1e-05
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrviglA 53
                  ++v  Gp G GK+t+l++++++++  +grv++l 
  KIR64607.1 32 GSFTVFIGPNGCGKSTLLRTVARVLRPTEGRVAVLG 67
                35899*********************9977777664 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   6.2e-05     0.044      30      54 ..      29      53 ..       8     117 .. 0.88
   2 ?    0.8   0.1      0.43   3.1e+02      97     148 ..     156     215 ..     139     217 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.2e-05
      AAA_25 30 lpagelallaGapgtGKttlaldla 54
                +++g++++++G+ g+GK+tl+  +a
  KIR64607.1 29 VAEGSFTVFIGPNGCGKSTLLRTVA 53
                689****************986555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.43
      AAA_25  97 l........rddarllvldlagv.eslpLfakdrggtl.ltadvdaleaaieevegvrlvvi 148
                 l         +d+  + ld+a + e l+L+a+ + g + + a++++l +a++++   +lvv+
  KIR64607.1 156 LlaqdtpilLLDEPTTYLDIAHQyEVLDLLADLHAGGRtVVAVLHDLNQAARYA--TDLVVL 215
                 333355665455666777788888899999886666665889999999999884..677775 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.9e-05     0.064       3      27 ..      36      61 ..      35      72 .. 0.78
   2 ?   -0.8   0.0         2   1.4e+03      16      52 ..     154     195 ..     148     221 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.9e-05
                EEE--SSSSHHHHHHHGGGGB.S--E CS
       AAA_5  3 lLvGppGtgKselaerlaaal.nrev 27
                + +Gp G+gKs+l + +a++l  +e 
  KIR64607.1 36 VFIGPNGCGKSTLLRTVARVLrPTEG 61
                579****************9974444 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2
                 HHHGGGGB.....S--EEEEE--TT--HHHHH--B--..... CS
       AAA_5  16 aerlaaal.....nreveyvqltrdtteedlkgrreikngtt 52 
                 a+ la+ +       +++y  +  +++  dl+  ++  ++t 
  KIR64607.1 154 AMLLAQDTpilllDEPTTYLDIAHQYEVLDLLADLHAGGRTV 195
                 444443333333344444444444444444444444334444 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.4e-05     0.024      21      63 ..      33      76 ..      16      99 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.4e-05
    ATPase_2 21 eiyfiYGpegsGKtaLlkeiienledkdk.yviyyialreesis 63
                ++ +  Gp g+GK++Ll+ ++  l+  +    +   ++r++s  
  KIR64607.1 33 SFTVFIGPNGCGKSTLLRTVARVLRPTEGrVAVLGRDVRGYSRR 76
                556667**************999965544133444555555555 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.4e-05     0.046      19      50 ..      25      56 ..      21      62 .. 0.86
   2 ?   -3.0   0.0       6.3   4.5e+03      71     161 ..     185     198 ..     171     207 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.4e-05
      AAA_27 19 ldfsaeeadlhliyGpNEAGKstalrAisdll 50
                ++++ +e ++++ +GpN  GKst+lr + ++l
  KIR64607.1 25 VSLRVAEGSFTVFIGPNGCGKSTLLRTVARVL 56
                566777999*****************998765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.3
      AAA_27  71 gavleeadgeelefaRrkgrkktlldaddqalpeevlaallggldretFealFgLdherLreGGealleaegelgqlLfeasaGlaslrev 161
                  a l                                                                             +aG +++ +v
  KIR64607.1 185 LADL-----------------------------------------------------------------------------HAGGRTVVAV 198
                 3333.............................................................................3333333333 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.9e-05     0.049       2      22 ..      36      56 ..      35      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.9e-05
                EEESSTTSSHHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavakel 22
                +++Gp G+GK++l + va+ l
  KIR64607.1 36 VFIGPNGCGKSTLLRTVARVL 56
                689***************876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00011     0.082       4      24 ..      36      56 ..      33      79 .. 0.89
   2 ?   -2.5   0.0       5.9   4.2e+03      73      85 ..     153     165 ..     137     189 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
                EEEC-TTTCHHHHHHHHHHHH CS
       NACHT  4 ilqGeaGsGKTtLlqklalaw 24
                +  G++G+GK+tLl+ +a+ +
  KIR64607.1 36 VFIGPNGCGKSTLLRTVARVL 56
                778*************99866 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.9
                 HHHHCCSCCCEEE CS
       NACHT  73 wavllelperlLl 85 
                  a+ll++ + +Ll
  KIR64607.1 153 LAMLLAQDTPILL 165
                 2333333333333 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00013     0.091       8      47 ..      36      75 ..      31      90 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
        ParA  8 vlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsi 47
                v  g  G GKSt+  ++A  L+ ++ +v++l  D+ G+s 
  KIR64607.1 36 VFIGPNGCGKSTLLRTVARVLRPTEGRVAVLGRDVRGYSR 75
                666778*******************************995 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0003      0.22       3      35 ..      35      69 ..      33      76 .. 0.86
   2 ?   -3.6   0.0       9.8     7e+03      82      97 ..     135     150 ..     118     176 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
                EEEEESTTCCHHHHHHHHH..CT--SS-EEEEESS CS
        cobW  3 tvltGflGsGKTtLlnhll..enraglklavivNe 35
                tv+ G+ G GK+tLl+++    +  + ++av+  +
  KIR64607.1 35 TVFIGPNGCGKSTLLRTVArvLRPTEGRVAVLGRD 69
                8999**************98878889999998666 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 9.8
                 T-SEEEEEECTTTTHH CS
        cobW  82 rldviliEttGlaePa 97 
                   d+il E +G     
  KIR64607.1 135 FGDRILAELSGGQRQR 150
                 4677888877744444 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00025      0.18      49      69 ..      36      56 ..      21      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
       Rad17 49 LisGPsGCgkstvvkvLskel 69
                +  GP GCgkst ++ +++ l
  KIR64607.1 36 VFIGPNGCGKSTLLRTVARVL 56
                678************999887 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00028       0.2       2      22 ..      36      56 ..      35      77 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00028
  RNA_helicase  2 wlyGpsgeGKStlakeLakal 22
                  ++ Gp+g+GKStl +++a+ l
    KIR64607.1 36 VFIGPNGCGKSTLLRTVARVL 56
                  689************977765 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00077      0.55       4      38 ..      35      69 ..      33      74 .. 0.89
   2 ?   -1.4   0.0       2.1   1.5e+03     126     173 ..     119     166 ..     101     180 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00077
                EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54  4 illvGlqGaGKTttlaKLaallkkegkkvllvaaD 38
                ++++G++G GK t l  +a++l+  + +v++   D
  KIR64607.1 35 TVFIGPNGCGKSTLLRTVARVLRPTEGRVAVLGRD 69
                689*******************9999888888777 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.1
                 HTHHHHHHHHHHHHSSCSEEEEESTTSSSSTTHHHHHHHHHTS-EEEE CS
       SRP54 126 gqeavkqakaFkeavgitgviltklDgdakgGaalsiaaelklPikfi 173
                  ++av+ a +   ++g++  il+ l g  +  a l++  + ++Pi ++
  KIR64607.1 119 DEQAVSSALDVTGTTGFGDRILAELSGGQRQRAWLAMLLAQDTPILLL 166
                 567778888888888888889999988888888888888888888776 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00047      0.34      22      51 ..      32      61 ..      17      82 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00047
  Mg_chelatase 22 gHnlllvGppGsGKtmlakrlpsllpplse 51
                  g   +++Gp G+GK+ l + ++ +l p + 
    KIR64607.1 32 GSFTVFIGPNGCGKSTLLRTVARVLRPTEG 61
                  445679*****************9988765 PP

>> DUF2791  P-loop Domain of unknown function (DUF2791)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0005      0.36      19      72 ..       5      55 ..       3      68 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0005
     DUF2791 19 PriGleliaVGrereiealledle.rvaeggaafrfirGeYGsGKtFllqllrer 72
                P+i l+ ++VG +r   ++ +d++ rvae  ++f +++G  G+GK+ ll++++ +
  KIR64607.1  5 PAIELDSVTVGYDRR--TVCRDVSlRVAE--GSFTVFIGPNGCGKSTLLRTVARV 55
                889999*****9985..578888624555..57999**************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 1727.27
//
Query:       KIR64608.1  [L=340]
Description: hypothetical protein TK50_02920 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-62  209.8  32.1    5.8e-62  209.5  32.1    1.1  1  FecCD     FecCD transport family


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.5  32.1   3.2e-66   5.8e-62       5     310 ..      35     331 ..      24     333 .. 0.92

  Alignments for each domain:
  == domain 1  score: 209.5 bits;  conditional E-value: 3.2e-66
       FecCD   5 llllslllgavkispsevfeallgkadsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllgslslfal 103
                 l +++l+ g + ++++e++ +l+g++d+  +++++elrlpr+ +al+vGaaL++aGal+Q+  rNpL +P+i+G++ gaa ga+++ll+l    +  + 
  KIR64608.1  35 LAVAALASGRYATPLHELWPVLTGGGDPGLRFVLFELRLPRIGTALAVGAALGAAGALFQSASRNPLGSPDIVGFTVGAATGALVVLLVL--HDTRLTP 131
                 678899*********************************************************************************996..4444455 PP

       FecCD 104 plaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllllllarkldl 202
                 ++ a+lg+++++   lll       +  +liL+Gi +sall++++++ll+ ++ ++++++  wl+Gsl+g s +++ lll +l++ll+l++l ar l+l
  KIR64608.1 132 AVGAVLGGAAVATAALLLG-----GTGQRLILVGIGLSALLTSVNAYLLTRAEVTDAQNAAVWLVGSLNG-SGHHLPLLLGALAALLPLSVLAARGLRL 224
                 5555555555555555555.....7999****************************************66.557889999******************* PP

       FecCD 203 lalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptelpvgivtali 301
                 ++ g + A slGv+v+r rl +++l+++ltav va +Gp+gFv+L++Ph+ar+l+      l+  sa lGa+lll+ad la+ l+  ++lpvg+vt ++
  KIR64608.1 225 IENGGDKALSLGVPVRRQRLTATALAVALTAVGVAGAGPVGFVALAAPHLARRLTR-VAAPLVTTSAALGAALLLAADQLAQRLVPGQQLPVGAVTGVL 322
                 ****************************************************9999.7799************************************** PP

       FecCD 302 Gapffiyll 310
                 G+ +++++l
  KIR64608.1 323 GGGYLALVL 331
                 *****9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2431.31
//
Query:       KIR64609.1  [L=341]
Description: hypothetical protein TK50_02925 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-82  276.2  30.4    3.6e-82  275.9  30.4    1.0  1  FecCD        FecCD transport family
  ------ inclusion threshold ------
       0.63    9.8   6.0       0.45   10.3   1.8    2.5  2  7TM-7TMR_HD  7TM receptor with intracellular HD hydrolase


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.9  30.4     4e-86   3.6e-82       2     311 ..      26     334 ..      25     335 .. 0.98

  Alignments for each domain:
  == domain 1  score: 275.9 bits;  conditional E-value: 4e-86
       FecCD   2 lllllllslllgavkispsevfeallgkadsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllgslsl 100
                 ll+++++sl++ga +++p +v++ l++++ds++  iv+e+rlpr+++a+ vGaaLa+aG+l+Q++trNpLadP++lG+++gaa+++v+++l   g +++
  KIR64609.1  26 LLASIAASLVVGALPLTPGTVLRELVAHGDSQAGLIVWEVRLPRTAIAICVGAALALAGVLMQALTRNPLADPGLLGVNAGAAAAVVAGILA--GVAGQ 122
                 78999*************************************************************************************99..79*** PP

       FecCD 101 falplaaflgallalllvllla..rkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvlllllllllllla 197
                  + +l+a+lga +a++lv ++   r+ ++a+  +l+LaG av+a l+++++ ++ll +++a+++++fw +Gsl+ + +s +l ++++l+++l+++++++
  KIR64609.1 123 RGHLLLALLGAGVAAGLVTVIGgtRGPGTAEDGRLVLAGAAVGACLTGAVAGVTLL-DQTAFDRYRFWAVGSLADQPLSALLTAAPALVAGLVVTVAVI 220
                 ********************998888899999**********************99.****************************************** PP

       FecCD 198 rkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptelpvgi 296
                 r+ld+l++gd+  ++lGvn+ r+rll+l++++ll++ a+a++GpigF+GL+vPh ar+++g++  +++ +s+llG +ll+ ad+l+rll++p e++v i
  KIR64609.1 221 RPLDVLRFGDDGGTALGVNPGRTRLLALVATTLLCGGATAVAGPIGFLGLAVPHAARAICGPRLGWVVAYSGLLGPILLITADVLGRLLARPGEIEVAI 319
                 *************************************************************************************************** PP

       FecCD 297 vtaliGapffiylll 311
                 v+ +iGap+fi+l++
  KIR64609.1 320 VMGAIGAPVFIALVR 334
                 ************986 PP

>> 7TM-7TMR_HD  7TM receptor with intracellular HD hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1     0.055   4.9e+02     129     150 ..      14      35 ..       8      53 .. 0.52
   2 ?   10.3   1.8     5e-05      0.45      75     160 ..      72     157 ..      67     185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.055
  7TM-7TMR_HD 129 llragllvalvnvlvilalsli 150
                  ll agll+ +v++l+ +a sl+
   KIR64609.1  14 LLAAGLLACAVALLASIAASLV 35 
                  4444444444444443333332 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 5e-05
  7TM-7TMR_HD  75 lsllldsrlalvvsvllsllisilfgnnlellllalvsglvgallvrklrsRsdllragllvalvnvlvilalsliqssnlswlei 160
                  +++ +++ lal+ +++ +l    l++ +l  + ++ ++++v+++l++   +R +ll+a l ++++++lv+++ ++  +++ ++ ++
   KIR64609.1  72 IAICVGAALALAGVLMQALTRNPLADPGLLGVNAGAAAAVVAGILAGVAGQRGHLLLALLGAGVAAGLVTVIGGTRGPGTAEDGRL 157
                  456677777777777777777777799999999***********************************999998866666544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2476.75
//
Query:       KIR64610.1  [L=349]
Description: hypothetical protein TK50_02930 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-24   87.3   0.0    1.5e-24   86.9   0.0    1.1  1  Peripla_BP_2  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.0   8.1e-29   1.5e-24      22     223 ..      92     294 ..      67     308 .. 0.86

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 8.1e-29
                   EEB-GGG--GGGGGGT..TS-BSBESSSB-HHHHHHH--SEEEE-GGG...GGGHHHHHHHS-EEE----TTS..HHHHHHHHHHHHHTT-HHHHHH CS
  Peripla_BP_2  22 vgvdtttsdpldadkleeaivevgadgeidvEklaalkPDlvilskglgltdedeellksgiptvivessntg..eslkeqiralgellgledeaek 116
                    g+   + +p++ ++l ea +ev a+ e+d+Ek+aal+PD++++ +++   +++++ll++++ptv+++ +       ++ + ra g+++g+ +eae+
    KIR64610.1  92 YGNMPNATWPWARERLGEARPEVLARAELDYEKIAALRPDVIVGLSSG-MSRQEYDLLAKIAPTVAQPAGDGSwaVTWQQMTRAAGQITGRSAEAET 187
                   455555667777777888*************************99998.8*****************987644669********************* PP

                   HHHHHHHHHHHHHHTS-TT.-EEEEEEEETTE..EEEE-TTSTTTHHHHTS--EESTTT--....STT-EEE-HHHHHHH--SEEEEEEHHHHT-S- CS
  Peripla_BP_2 117 lvaeidsklaaaksaidsekpkpvlvfggadeggyvvagsnsyigdlldalgieniaaesk....kseyeeisaEqilasdpdvifvsgraeadnkt 209
                   lva++++++a++  a + + + +  vf++ +eg y++++  +  +++l +lg+    +        +++++is+E++   d+dv ++s      ++ 
    KIR64610.1 188 LVADLEKRIASVAGAQPRL-KGARTVFASTYEGQYYLFSPETTASKVLLDLGLTMSPEVTTltdnANQSATISRERFDLTDVDVAVWSEA---ATDP 280
                   *******************.9999**********************9999999766444445677***********************99...9*** PP

                   -HHHHT-SHHHHTS CS
  Peripla_BP_2 210 gleflkenpllael 223
                   g++ l+ +pl+ +l
    KIR64610.1 281 GVATLLGDPLYTRL 294
                   *********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2348.65
//
Query:       KIR64611.1  [L=303]
Description: hypothetical protein TK50_02935 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-25   88.5   0.0    5.6e-25   87.9   0.0    1.3  1  FAD_binding_9  Siderophore-interacting FAD-binding domain
    9.9e-22   77.7   0.0    1.7e-21   76.9   0.0    1.4  1  SIP            Siderophore-interacting protein
  ------ inclusion threshold ------
      0.099   12.7   0.2       0.27   11.4   0.2    1.6  2  Tricorn_C1     Tricorn protease C1 domain


Domain annotation for each model (and alignments):
>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.0   9.4e-29   5.6e-25       2     114 ..      15     123 ..      14     128 .. 0.89

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 9.4e-29
  FAD_binding_9   2 vvrverlspslrrvtltgeelagfksd.gtDqhikLllpepgqtepelppelteeglqeweelpederpvmRtYtvraldaeaeeldidfvlHgde 96 
                    v +++rl+p+l+rv+l+g++la+f+    +D+++ L +p pg++ p  p++l+ e    w   +e + p+ R+Y+vr++d+  ++l++df+lH++ 
     KIR64611.1  15 VHETRRLTPHLQRVVLGGPDLARFPALgVPDESVTLYFPRPGEPAP-PPMTLRGEV---WGYHDEPHPPTGRNYSVRDFDPVGARLTVDFALHDH- 105
                    889**********************77599**************98.345544444...76689999999***********************99. PP

  FAD_binding_9  97 gpaarwAaqAqpGdelai 114
                    gpa++wA++A++G  l +
     KIR64611.1 106 GPATSWARRAETGTGLLL 123
                    *************87766 PP

>> SIP  Siderophore-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   2.8e-25   1.7e-21       2     118 ..     137     257 ..     136     258 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 2.8e-25
         SIP   2 dwvllagDeTAlPAiaaiLeelpadaqvravievpdaadelelsa....paaveltwlvregaaaagelLaealrelelpagelyvwvagEaavvkalR 96 
                 +w++la+D ++lPA+ +i+ e  +++ vr+++  pd ad  +l a    ++av+++  v  g+ +   +L+++lre++lp+g+ yvwvagEa+ +++ R
  KIR64611.1 137 RWLVLAADLAGLPAATRIVAERTPGVPVRVLVDLPDTADARDLFAaagdDPAVQIDVRVGVGNGHGPGSLVDRLRETTLPDGPGYVWVAGEAGECRQAR 235
                 89*****************************************99888878888888888888667789****************************** PP

         SIP  97 rhlvkergldrkqvaamgYWrr 118
                 ++l++ ++l+r++   +gYWr 
  KIR64611.1 236 SVLRTVHHLPRDRAVCVGYWRT 257
                 ********************96 PP

>> Tricorn_C1  Tricorn protease C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.3   7.9e+03      15      26 ..       6      17 ..       4      19 .. 0.79
   2 ?   11.4   0.2   4.4e-05      0.27      18      44 ..     253     277 ..     235     280 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.3
                HHHHSS-HHHHH CS
  Tricorn_C1 15 lrdkFydpdmhg 26
                +r  F+++++h 
  KIR64611.1  6 TRPGFWTATVHE 17
                6778**999985 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 4.4e-05
                 HSS-HHHHHHHHHHHHHHHHGGGGG-- CS
  Tricorn_C1  18 kFydpdmhgvDWeavkerYepllprva 44 
                  +++ d    DWe+ ++r++pll++v 
  KIR64611.1 253 GYWRTDAA--DWEHRYARFRPLLDQVY 277
                 48888655..**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2112.68
//
Query:       KIR64612.1  [L=101]
Description: hypothetical protein TK50_02950 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19   11.4   0.0       0.19   11.4   0.0    1.8  2  GIT_SHD   Spa2 homology domain (SHD) of GIT


Domain annotation for each model (and alignments):
>> GIT_SHD  Spa2 homology domain (SHD) of GIT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.1e-05      0.19       2      25 ..      46      69 ..      46      69 .. 0.96
   2 ?   -3.9   2.1      0.65   1.2e+04      25      28 ..      87      90 ..      87      91 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.1e-05
     GIT_SHD  2 RqKLarLsnkqFeeLvtDVydEld 25
                R++L r++ ++F   +tDV+ E+d
  KIR64612.1 46 RTRLRRFPHVRFDYSSTDVLTEAD 69
                99******************9997 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 0.65
     GIT_SHD 25 dRRe 28
                dRR+
  KIR64612.1 87 DRRQ 90
                8999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 800.47
//
Query:       KIR64613.1  [L=248]
Description: ZIP family zinc transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-06   26.1  19.7    0.00036   19.9   9.1    2.3  2  Zip              ZIP Zinc transporter
  ------ inclusion threshold ------
       0.71    9.4   5.6       0.53    9.8   0.4    2.4  2  Nitrate_red_gam  Nitrate reductase gamma subunit
        1.2    9.4   6.4        2.6    8.3   0.0    2.8  2  Vut_1            Putative vitamin uptake transporter
        3.9    7.7  10.2       0.65   10.2   0.8    2.8  3  DUF2178          Predicted membrane protein (DUF2178)


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   2.8   2.3e-05       0.1     247     306 ..       9      61 ..       2      78 .. 0.73
   2 !   19.9   9.1     8e-08   0.00036     186     331 ..     109     244 ..      81     246 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.3e-05
         Zip 247 llnllfaltaplGiliGilvrsisessgaeivsgillalsaGtflYvalvellphEllne 306
                  + ll +++ +lG+++G++       +    v + ++a+ aG++l    +el++ E +++
  KIR64613.1   9 GWGLLAGSALLLGAALGWF------VPVPRRVIASIMAFGAGVLLSAVSFELIA-EAHEQ 61 
                 5667777777888888888......77777788888888888888888888887.66554 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 8e-08
         Zip 186 aiilllglilHsfidGLAlG..vssssstgislfiAvllHelpeelglgaiLlkaglsrkkavllnllfaltaplGiliGilvrsisessgaeivsgil 282
                 +  + +g  l+ +++ + +G  +  +    +++++Av+l ++pe+l+  a + +ag s+++++ l    al++ l++l G        ++    v + +
  KIR64613.1 109 GSAIAVGALLDGIPESVVIGasLLTGGPVSLVTVVAVFLSNVPEGLSSAAGMRRAGRSSRYVFALWAGIALVSGLAALAGYT----LLGGAPPEVLASI 203
                 5556778888999999999988889999***********************************6666666666666666666....445688899999* PP

         Zip 283 lalsaGtflYvalvellphEllnekgssslkqsllqllglllGfalmll 331
                  al+aG  l + +  ++p E  ++        +ll  l+ ++Gf++ ++
  KIR64613.1 204 TALAAGAILAMITDTMVP-EAFEDA-------HLLVGLITVAGFLTAFA 244
                 ******************.999988.......68888888888877665 PP

>> Nitrate_red_gam  Nitrate reductase gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.4   0.00012      0.53      56     116 ..      35      95 ..      11     103 .. 0.88
   2 ?    1.5   0.7      0.04   1.8e+02      68     105 ..     150     192 ..     124     195 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00012
  Nitrate_red_gam  56 lvvllgHlvGlliPksvtealgvseelyqllalvaGliagvlalvGlllLllRRltnkrvr 116
                      ++ +++  +G+l+    +e+++  +e+  ll +++G++ g+la +G+ +Ll+RR +++r r
       KIR64613.1  35 IASIMAFGAGVLLSAVSFELIAEAHEQGGLLPTAVGAAGGALAYTGANVLLARRGARHRKR 95 
                      66677778899999999999999999999*************************8887755 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.04
  Nitrate_red_gam  68 iPksvtealgvsee...lyqllalvaGl..iagvlalvGlllL 105
                      +P+ + +a g++++      ++al+aG+  + g++al+G +lL
       KIR64613.1 150 VPEGLSSAAGMRRAgrsSRYVFALWAGIalVSGLAALAGYTLL 192
                      5666666666655411133445555554115677777777766 PP

>> Vut_1  Putative vitamin uptake transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00058       2.6      58      92 ..      26      60 ..      11      82 .. 0.83
   2 ?   -0.3   4.9      0.28   1.2e+03      34      70 ..     202     239 ..     127     248 .] 0.65

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00058
       Vut_1 58 vfgltprivlasliaylvsqlldvyvfhrlkkltk 92
                 f ++pr v+as++a+ ++ ll +  f+ + + ++
  KIR64613.1 26 WFVPVPRRVIASIMAFGAGVLLSAVSFELIAEAHE 60
                58899*********************999975554 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.28
       Vut_1  34 flanlla.lillllalllpaealesvfgltprivlasl 70 
                  +++l a +il +++ ++ +ea+e    l+  i++a++
  KIR64613.1 202 SITALAAgAILAMITDTMVPEAFEDAHLLVGLITVAGF 239
                 22233333555555555555666666665555555554 PP

>> DUF2178  Predicted membrane protein (DUF2178)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2     0.014        63       6      43 ..      19      55 ..      13      61 .. 0.70
   2 ?   -3.0   0.2       1.8   8.1e+03      20      29 ..     128     137 ..     111     150 .. 0.46
   3 ?   10.2   0.8   0.00014      0.65       4      49 ..     180     226 ..     170     245 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.014
     DUF2178  6 avialvglgiwaaig.nvllaviavaaGvllaillkkkv 43
                +++a++g+ +    +  v + ++a++aGvll++++ + +
  KIR64613.1 19 LLGAALGWFV--PVPrRVIASIMAFGAGVLLSAVSFELI 55
                4566777777..55505556677899*****99887765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.8
     DUF2178  20 gnvllaviav 29 
                 g+ ll++  v
  KIR64613.1 128 GASLLTGGPV 137
                 3333333333 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00014
     DUF2178   4 ivavialvglgiwa..aignvllaviavaaGvllaillkkkveevveD 49 
                 +  ++al g+ +    a+++vl+ + a+aaG +la+++  +v e  eD
  KIR64613.1 180 VSGLAALAGYTL-LggAPPEVLASITALAAGAILAMITDTMVPEAFED 226
                 334455555555.257999************************99999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1835.10
//
Query:       KIR64614.1  [L=396]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-31  107.3   0.0    1.7e-30  105.8   0.0    1.8  2  Acetyltransf_9   Acetyltransferase (GNAT) domain
    2.9e-09   37.2   0.0    2.3e-06   27.8   0.0    2.3  2  Acetyltransf_1   Acetyltransferase (GNAT) family
    9.4e-08   32.9   0.7    2.1e-07   31.7   0.7    1.6  1  Acetyltransf_17  Acetyltransferase (GNAT) domain
    8.6e-06   26.1   0.0    3.5e-05   24.1   0.0    2.0  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00042   20.3   0.0      0.003   17.5   0.0    2.0  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0016   18.8   0.0     0.0037   17.6   0.0    1.7  1  SCP2_2           Sterol carrier protein domain


Domain annotation for each model (and alignments):
>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.0   5.5e-34   1.7e-30       2     125 ..       3     129 ..       2     131 .. 0.88
   2 ?   -2.5   0.0       1.6   4.9e+03      63      86 ..     257     280 ..     254     293 .. 0.81

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 5.5e-34
                     EEEE-GGGHHHH.HHHHHHHTT----H..HHHHHHH...HHHTTSEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHH CS
  Acetyltransf_9   2 irelteedldev.lellkyaFqdeespleeireyfr...klleesrvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvls 92 
                     ir+lt ++ ++  + l++yaF+ ++ +  e+ e+fr   ++ e  r+l+ae++ge  +++ ++p++ n++G+ l++agv+gVa++p  r+rg+++
      KIR64614.1   3 IRRLTNSERPATsFPLQAYAFEASPMRP-ERAEEFRsylPYHEATRTLVAEEGGETLATASAIPMRQNLRGAVLPMAGVAGVATHPLARRRGHVR 96 
                     899999987764389*******999988.4444444000555678************************************************** PP

                     HHHHHHHHHHHHTT--EEEE--SSHHHHHTTT- CS
  Acetyltransf_9  93 kLlaraleemreegqplsllfPssipiYrrfGy 125
                     +Ll+++l+emr+eg+pl+ l+P+++++Y+rfGy
      KIR64614.1  97 ALLRQLLDEMRDEGHPLTALYPFRASFYERFGY 129
                     ********************************9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.6
                     EEEETTEEEEEEEEEEEEE-CCGT CS
  Acetyltransf_9  63 elnvpGktlkaagvtgVavapehr 86 
                     +l++   +l+  ++t+ av+ e r
      KIR64614.1 257 RLRIAADELPELWLTDLAVHVEAR 280
                     566666778888999999999987 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   7.7e-10   2.3e-06      17     117 .]      31     129 ..       4     129 .. 0.78
   2 !    7.2   0.0    0.0019       5.8      29      73 ..     195     238 ..     168     267 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 7.7e-10
                     HHHHHHH.HHHHHHSTTC.EEEEEEETTEEEEEEEEEEEET....TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTE CS
  Acetyltransf_1  17 edaseee.feesfsleae.gllvaeedgeliGfisllkipd....ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedn 105
                     e+a+e + + ++   ++  ++lvaee+ge ++++s+ +  +       + a + ++a +p +r++G  +aLl++l++++r+eg     l+ +   
      KIR64614.1  31 ERAEEFRsYLPY---HEAtRTLVAEEGGETLATASAIPMRQnlrgAVLPMAGVAGVATHPLARRRGHVRALLRQLLDEMRDEGHPLTALYPFR-- 120
                     222222235555...88889999************9999999999444679999****************************88665774433.. PP

                     HHHHHHHHHTTE CS
  Acetyltransf_1 106 daairlYeklGF 117
                          +Ye++G+
      KIR64614.1 121 ---ASFYERFGY 129
                     ...679999998 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0019
                     HSTTCEEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGT CS
  Acetyltransf_1  29 sleaegllv.aeedgeliGfisllkipdekggvayieslaVspeyr 73 
                     +++++++ + a+ dge +G ++++++++  gg+ + ++l V+  y 
      KIR64614.1 195 RDDDDRWQLtARVDGETVGVLTYRIDDH--GGELAGDDLLVADPYA 238
                     233334444699****************..8888888888887774 PP

>> Acetyltransf_17  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.7     7e-11   2.1e-07      18     110 ..     195     281 ..     185     293 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 7e-11
                      TTSTGCSEEEEEE.TTSEETEEEEEEEETTE.TTC.EEEEEEEEESSHHHHHHHHHHHHCGTGTESEEEEEEESTT-SCGGGCSSGG.EECEEE CS
  Acetyltransf_17  18 rearegalayvvyrdddgpeGyllYrvkeesgaeg.tleVrelvaltpeayraLlrflashdslveeveawkappddplpllledprikeaarp 110
                      r+ ++++++      d+++ G+l+Yr+    +++g +l  ++l +++p a++  l+fla+h ++ve+++  + ++d+  +l l+d  ++ +ar+
       KIR64614.1 195 RD-DDDRWQLTAR-VDGETVGVLTYRI----DDHGgELAGDDLLVADPYARALVLQFLARHVDQVERIR-LRIAADELPELWLTDLAVHVEARV 281
                      22.3455555554.45678********....344559********************************.99999**999***99997555554 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.2e-08   3.5e-05       4      75 ..      47     130 ..      44     131 .. 0.71
   2 ?   -2.8   0.0       2.9   8.7e+03       8      33 ..     205     234 ..     202     240 .. 0.61

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.2e-08
                     EEEEEEETTEEEEEEEEEEES..........TCTEEEEE-GGGTTSSHHHHHHHH..TT...SEEEEE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7   4 evfVaeddgkivGfialslld..........aeitrlaVdpeyrgkGiGraLlea..ae...kgiile.qlelnaekaikfYeklGFe 75 
                     +++Vae++g+ + ++++ +            a   ++a++p +r++G  raLl+    e   +g   +  + l +   ++fYe++G++
      KIR64614.1  47 RTLVAEEGGETLATASAIPMRqnlrgavlpmAGVAGVATHPLARRRGHVRALLRQllDEmrdEG---HpLTALYP-FRASFYERFGYV 130
                     678999999999888777777777776666556666*****************96442234455...22223322.4479******97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.9
                     EEETTEEEEEEEEEEES..TCTEE..EEE- CS
  Acetyltransf_7   8 aeddgkivGfialslld..aeitr..laVd 33 
                     a+ dg+ vG + + ++d  +e+ +  l V+
      KIR64614.1 205 ARVDGETVGVLTYRIDDhgGELAGddLLVA 234
                     667888999888777765433322455554 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     1e-06     0.003      19     107 ..      33     130 ..      18     138 .. 0.79
   2 ?    0.0   0.0      0.26   7.7e+02      30      58 ..     199     227 ..     178     263 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1e-06
  Acetyltransf_10  19 pealreri.eegealllvaeeggkivGvi.el.rdgs.........hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpf 100
                      +e++r+++  ++++ +lvaeegg+ + ++ ++ ++++          ++ ++ +p +r++G  +aLl ++++e++++ ++  lt+   p   +f
       KIR64614.1  33 AEEFRSYLpYHEATRTLVAEEGGETLATAsAIpMRQNlrgavlpmaGVAGVATHPLARRRGHVRALLRQLLDEMRDE-GH-PLTA-LYPFRASF 123
                      36777777559999999*****99996664455444469999*9999**************************9555.55.4444.4578999* PP

  Acetyltransf_10 101 YeklGFk 107
                      Ye++G++
       KIR64614.1 124 YERFGYV 130
                      *****98 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.26
  Acetyltransf_10  30 ealllvaeeggkivGvielrdgshisllf 58 
                      +   l a ++g+ vGv+++r ++h + l+
       KIR64614.1 199 DRWQLTARVDGETVGVLTYRIDDHGGELA 227
                      44556788999*****9887777766655 PP

>> SCP2_2  Sterol carrier protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.2e-06    0.0037      26     103 ..     324     392 ..     295     393 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.2e-06
                 TSGGGSEEEEEEEETTSEEEECSCE-SCE.EEEEHHHHHHHHTTSS-HHHH..HHTTSSBSSHHHHHHHHHHS-SS--B- CS
      SCP2_2  26 llpwnngrfrltiedgkgeevgkeeeadadltldiqtLaqlllGyrsaseL..arlgriegaeealatldalfpkekpyl 103
                 ll+ ++gr++l+   g +  +g+    +a  tl++++L++l  G  +++e   + lgr+ ++  a a+l++lfp++ pyl
  KIR64614.1 324 LLDGATGRLELS---GDA--TGSV---PA-ATLTAAGLSALAYGVLDPAEVdvRGLGRVPAD--AAAELRRLFPRRLPYL 392
                 568888999999...444..3333...45.9******************9722456666655..56************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 2550.58
//
Query:       KIR64615.1  [L=240]
Description: protein phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-14   53.5   2.4    3.5e-14   52.9   2.4    1.2  1  PP2C_2    Protein phosphatase 2C
    2.3e-10   40.5   0.0    1.6e-08   34.5   0.0    2.0  2  PP2C      Protein phosphatase 2C
    3.1e-06   27.3   4.2    5.3e-06   26.5   4.2    1.4  1  SpoIIE    Stage II sporulation protein E (SpoIIE)


Domain annotation for each model (and alignments):
>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   2.4   5.9e-18   3.5e-14      11     184 ..      19     198 ..      16     220 .. 0.70

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 5.9e-18
      PP2C_2  11 pcqDalavwtdsggsllaVaDGaGSakrSerGariaveavvealaelleseeeeeeallraleaailadvlkeeaeaq.daelkdyatTllaavvtpde 108
                 +++D+      +g +l+aVaDG+G  + +e++++i+ +++ e    + ++ ++   ++lra+++++++     +a+ + d   + ++tTl a+++++d 
  KIR64615.1  19 NNEDSAL----AGDRLVAVADGMGGLPAGEVASEIVIRILDELDPPTTTEGAA---DALRAVVSTANQR---IRAAISvDPAREGMGTTLTAGLLAGDV 107
                 6666665....566778**************9999888887766555544444...4555555555533...3454443888999************** PP

      PP2C_2 109 ivalqiGDGaivvrdrdgevqllge...............pdsgeyanqttfltsedaeeel................rirrlkledgdalllmTDGla 176
                 +v++q+GD+ + +  rd+e+ +l+                pd++ +                                 + +l++ +gd+lll++DGl+
  KIR64615.1 108 LVLAQVGDSRC-YLLRDNELTQLTRddtfvqalvdqgalsPDQARHH--------------PqrslvtravqgadtppAVGTLTVFAGDRLLLCSDGLS 191
                 ***********.6799******9993333333333333333334444..............33355555566666677888888889***********9 PP

      PP2C_2 177 nslrdeer 184
                 + +   ++
  KIR64615.1 192 DYVD-DAA 198
                 7664.443 PP

>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   2.7e-12   1.6e-08      27     139 ..      21     132 ..       6     137 .. 0.79
   2 !    4.1   0.0     0.005        30     208     257 ..     183     228 ..     177     229 .. 0.75

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 2.7e-12
                 TTCCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTHHHHHHHHHHHHH...HHHHHHHHHHHHCHCCT-EEEEEEEEEETTEEEEEEESS- CS
        PP2C  27 sssgkssvsffavfdghggseaakyarehleeilksqksfeelekleqalrksfla...dtdeelksskantepsksGstavvalirgtklyvAnvGDS 122
                 + s+   ++++av dg+gg  a ++a+e + +il++ +  ++ e   +alr  +     +++  +  + a    +  G+t +  l+ g+ l +A+vGDS
  KIR64615.1  21 EDSALAGDRLVAVADGMGGLPAGEVASEIVIRILDELDPPTTTEGAADALRAVVSTanqRIRAAISVDPA---REGMGTTLTAGLLAGDVLVLAQVGDS 116
                 3466777899***************************999999944555554444410124444444444...699*********************** PP

                 EEEEEETTEEEEECS-- CS
        PP2C 123 ravLcrkgnakkelted 139
                 r+ L r+++   +lt+d
  KIR64615.1 117 RCYLLRDNELT-QLTRD 132
                 *******9998.**998 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.005
                 EEEE-HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCHHCH CS
        PP2C 208 liLacdGlwdvlsdqeavdlvrdelekkkspeevaeelvdeaiargsedn 257
                 l+L +dGl d+++d  ++  +  +     + +++ e+lv+ a + g+ dn
  KIR64615.1 183 LLLCSDGLSDYVDDAAIA-AALAMYG---DRQQCGEQLVKLAHQAGAPDN 228
                 789*********987654.3444444...368888888888888888887 PP

>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   4.2   8.9e-10   5.3e-06       6     192 ..      30     236 ..      26     237 .. 0.74

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 8.9e-10
                 EEEEEECSSSSHHHHHHHHHH.HHHHHHHHHTTTS......HHHHHHHHHHHCHCTTSTT.....TTCEEEEEEEETTTTEEEEEEESSSSEEEEETTS CS
      SpoIIE   6 alvvgDvvGhGleAalimgll.rsalrelatagle......paevlkrlnralardleee....erfaTavlavydpstgkleyanaGhpppllvrpdg 93 
                 +++v+D++G Gl+A  +++++ + +l+el   +++      +  v++ +n+++ + +  +     +++T++ +   ++   l +a++G++ ++l+r+++
  KIR64615.1  30 LVAVADGMG-GLPAGEVASEIvIRILDELDPPTTTegaadaLRAVVSTANQRIRAAISVDpareGMGTTLTAGL--LAGDVLVLAQVGDSRCYLLRDNE 125
                 689******.8888877777514455555533333787899888888888888777777799977888888887..88899****************66 PP

                 .TEEEEE--SS--TTTSSS..........................T-EEEEEEE--TTEEEEEESCCCCSSSHHHHHHCCCHHCHHHHCT.....HCCH CS
      SpoIIE  94 .gtklllastglplGilpe..........................adyetaelelepgdtlllyTDGvtEardsdgelfgkerllallasaegesleel 165
                  ++ ++++++  +l    +                          +++ + +l++ +gd+lll++DG+ +   +d  +   +++la+    +    +++
  KIR64615.1 126 lTQLTRDDTFVQAL---VDqgalspdqarhhpqrslvtravqgadTPPAVGTLTVFAGDRLLLCSDGLSDYV-DDAAI---AAALAMYG--D---RQQC 212
                 53333333333332...22234555899*****************************************998.66666...35555555..3...6889 PP

                 HHHHHHHHHHHTTSSSSS-EEEEEEEE CS
      SpoIIE 166 ldalveellelgsgeleDDitllvlrv 192
                  ++lv+ ++++   +  D +t++v +v
  KIR64615.1 213 GEQLVKLAHQA---GAPDNVTVVVSDV 236
                 99999988884...4889999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1724.90
//
Query:       KIR64616.1  [L=439]
Description: benzoate transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.3e-101  337.7  53.5   9.1e-101  337.4  53.5    1.0  1  BenE        Benzoate membrane transport protein
  ------ inclusion threshold ------
      0.017   15.8   1.8      0.028   15.1   1.8    1.2  1  Amelogenin  Amelogenin


Domain annotation for each model (and alignments):
>> BenE  Benzoate membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.4  53.5    1e-104  9.1e-101       8     377 ..       8     377 ..       4     378 .. 0.95

  Alignments for each domain:
  == domain 1  score: 337.4 bits;  conditional E-value: 1e-104
        BenE   8 vlagllavligyagslviifqaaqaaglseaqiaswllalslvmglsgillslryrvPvvtaWstPgaalLvtslpgl.slaeavgaflvsaallvlvG 105
                 vlag++++l+g+a+s +++ ++ +a+g+ e q+as lla+s+++gl +++l lr r P+ +aWstPgaalLv++ p   +   avgaf+v++al+v+ G
  KIR64616.1   8 VLAGVVTALVGFASSFTVVLAGLRAVGADERQAASGLLAVSVASGLCAVWLGLRHRLPMAIAWSTPGAALLVATGPVPgGWPAAVGAFVVCGALIVAAG 106
                 89**********************************************************************99876426899**************** PP

        BenE 106 isgaldrlvkriPkslaaallagillrfglkavkaleqqpllvlalllsyllarrfaPryavllvLvvgvlvavll..GklelaalalelarpewitPe 202
                 ++ al r+v++iP ++aaa+lag+ll+++   v+al + p l++++++++l+ +rfa r+av ++Lv + ++ +++  G + ++ l+    ++ +++Pe
  KIR64616.1 107 LFPALGRAVAAIPGPIAAAMLAGVLLPLCTAPVRALVEVPRLAAPVVVTWLVLHRFARRWAVPAALVAAAVAIAVTtpGGVGTHGLR---PVLVLTAPE 202
                 ******************************************************************987665554413555555444...567899*** PP

        BenE 203 fslaallslalPlvlvaltsqflpGlavLkaagYeapakplivatglasllaapfGgvtvnlaaitAaictgpdahedkarryvaalaaglfyllagif 301
                 +++ a++ lalPl+lv++++q++pG+avL  +gY++p +  +++tglas++ ap+Gg++vnlaaitAa+  gpdah+d++rr+va++ ag+   l+g+ 
  KIR64616.1 203 WTVPAVIGLALPLFLVTMAAQNVPGMAVLTGYGYRPPLGSALRVTGLASAIGAPVGGHAVNLAAITAALAAGPDAHPDPERRWVASVTAGVGLALLGLG 301
                 *************************************************************************************************** PP

        BenE 302 aatlvalfaalPkelvallAglALlgaiasalqaalkderereaalvtflvtasgltllgigaafwGlvlGllvll 377
                 a+  +al+ + P  l+ ++AglALl+a+a+a+ aa++d+++reaa+vt++vtasg++llg+g+afwGlv+G+l+ll
  KIR64616.1 302 AGVATALVLLSPPVLIEAVAGLALLAALAGAVSAAVADPATREAAVVTLVVTASGVSLLGVGGAFWGLVAGWLMLL 377
                 ************************************************************************9876 PP

>> Amelogenin  Amelogenin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   1.8   3.1e-06     0.028     118     163 ..     384     429 ..     378     437 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.1e-06
  Amelogenin 118 plkptqlsnpvhpleplkpdnenkplfplqplpplledlpleawpa 163
                 +    ++++p +p ep++p+++ +p+  +qp+pp+ +  p e+  a
  KIR64616.1 384 ESDHAEPGEPGEPGEPVEPARPAQPVESVQPVPPVEPVEPVEPASA 429
                 4555667788888888888888899999999999988888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3386.09
//
Query:       KIR64617.1  [L=128]
Description: hypothetical protein TK50_02980 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-05   24.8   0.2      0.041   14.2   0.1    2.2  2  DUF2171   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2171  Uncharacterized protein conserved in bacteria (DUF2171)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   2.3e-06     0.041       1      23 [.      15      37 ..      15      50 .. 0.85
   2 !    8.8   0.0   0.00011       1.9      40      60 ..     100     120 ..      86     124 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.3e-06
     DUF2171  1 IkehmeVvgsdGehvGtVDhveg 23
                ++ +m+V ++ G +vGtVD v+ 
  KIR64617.1 15 VTTGMPVFDVTGAEVGTVDLVQR 37
                5789***************9964 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00011
     DUF2171  40 hyiplswVasvdddkVhLskt 60 
                  y+ ++++a v d++V+L++ 
  KIR64617.1 100 VYVLADQIAAVADGRVRLDVL 120
                 69999*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 890.75
//
Query:       KIR64618.1  [L=86]
Description: hypothetical protein TK50_02985 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.29s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 589.78
//
Query:       KIR64619.1  [L=157]
Description: mechanosensitive ion channel protein MscL [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-34  118.8   0.1    1.9e-34  118.6   0.1    1.0  1  MscL      Large-conductance mechanosensitive channel, MscL


Domain annotation for each model (and alignments):
>> MscL  Large-conductance mechanosensitive channel, MscL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   0.1     1e-38   1.9e-34       1     120 [.       1     128 [.       1     129 [. 0.83

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 1e-38
        MscL   1 llkeFkefilrGnvidLAvgviiGaaftkiVtslvkdiimpliglll...gg..vdfselkiklkaeaavlkygafiqavinFliiafvi.Flivkain 93 
                 +lk+Fk+fi+rGnv+dLAvgv+iGaaft +Vt+l+k++++pli +++   +g    +s ++   + + +++++ af++avi+Fl++a+++ Fl+v ++n
  KIR64619.1   1 MLKGFKDFIMRGNVVDLAVGVVIGAAFTGVVTQLTKSFLEPLIRVFVlliTGsdKGLSGTAP--TFRGIAFDWIAFVNAVITFLLTAAALyFLVVFPMN 97 
                 89*****************************************9877444331123554444..456899********************9******** PP

        MscL  94 k....kkkeeeeeeeaeekeeellteirdll 120
                 +    +k+ ee  ++a+++e++llteird+l
  KIR64619.1  98 RlaerRKRGEEPPPAAPSEEVKLLTEIRDAL 128
                 *98643333666666666999********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1256.88
//
Query:       KIR64620.1  [L=249]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-22   80.5  14.5    2.8e-22   79.5  14.5    1.5  1  FCD       FCD domain
    3.5e-19   68.2   0.9    1.9e-18   65.9   0.6    2.2  2  GntR      Bacterial regulatory proteins, gntR family
      0.002   18.1   0.2     0.0034   17.3   0.2    1.3  1  DUF977    Bacterial protein of unknown function (DUF977)
  ------ inclusion threshold ------
      0.069   13.4   0.1        0.3   11.3   0.0    2.1  3  PaaX      PaaX-like protein
       0.15   11.7   0.0       0.15   11.7   0.0    2.6  3  RP-C      Replication protein C N-terminal domain


Domain annotation for each model (and alignments):
>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5  14.5   7.8e-26   2.8e-22       1     119 [.     122     239 ..     122     244 .. 0.91

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 7.8e-26
         FCD   1 dlyelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrrlrrlalssperleeslae 99 
                 ++ e+R++ E+eaarlaa r+t+adla+l+ +l+a e+a ++g+++ef+ead+a+H+a+++aa+n +lael+ ++ a lr  ++ a    +   e   +
  KIR64620.1 122 EVVEVRRAFEVEAARLAALRRTPADLAALDGALAAREAAWRAGRVDEFVEADAALHTAVVAAAHNGMLAELYASVGAALRSTISQAT-GDALEPERYVD 219
                 678*****************************************************************************9666654.66666677778 PP

         FCD 100 HraildAirardadaAraam 119
                 H +++dAira+d++ A++ +
  KIR64620.1 220 HARLVDAIRAGDPALAAREA 239
                 9***************9876 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.6   5.3e-22   1.9e-18       3      64 .]      40     101 ..      38     101 .. 0.97
   2 ?   -0.5   0.0      0.27   9.6e+02       1      20 [.     192     208 ..     192     217 .. 0.77

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 5.3e-22
                 HHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR   3 eqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64 
                 +q  e+Lr++Il ge+  G ++P+e +L+a++gV+r+tvReA r L+ +g++e rqg+Gt+V
  KIR64620.1  40 RQTIEQLRARILGGEWPVGGRIPTEPQLVAALGVGRNTVREAVRALVHAGVLECRQGSGTYV 101
                 57889********************************************************9 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHHHTTSS-T CS
        GntR   1 lyeqvyerLredIlsgelrp 20 
                 ly+ v ++Lr  I++   + 
  KIR64620.1 192 LYASVGAALRSTISQ---AT 208
                 68999999*999998...44 PP

>> DUF977  Bacterial protein of unknown function (DUF977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   9.6e-07    0.0034      11      94 ..      44     133 ..      34     147 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 9.6e-07
      DUF977  11 eelkeriiGlv.kkneri.tisdleritGvgrtsvrkylvdvlerGdlir...pGkyGvfrdervvrvwrkaa.ekatdqtlirklpdge 94 
                 e+l++ri+G      +ri t  +l++++Gvgr++vr  ++  +  G l      G y v +de + +v r+ + ++ t+ + +r+  + e
  KIR64620.1  44 EQLRARILGGEwPVGGRIpTEPQLVAALGVGRNTVREAVRALVHAGVLECrqgSGTYVVSTDELAPVVARRLTdDRMTEVVEVRRAFEVE 133
                 67889999764156789944569*****************99999999642225889999***999888876515667777777665555 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.4e-05       0.3      28      56 ..      66      94 ..      56     104 .. 0.87
   2 ?   -2.9   0.0       2.3   8.3e+03      24      35 ..     187     198 ..     178     208 .. 0.69
   3 ?   -2.4   0.0       1.7     6e+03       3      18 ..     201     216 ..     199     225 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.4e-05
        PaaX 28 rllaelGiseslvRaalsRlakaGwlvre 56
                +l+a+lG++ ++vR a+  l+ aG l   
  KIR64620.1 66 QLVAALGVGRNTVREAVRALVHAGVLECR 94
                699*********************99754 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.3
        PaaX  24 gsLirllaelGi 35 
                 g L +l a++G 
  KIR64620.1 187 GMLAELYASVGA 198
                 567777777774 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.7
        PaaX   3 rSlivtlygdyveprg 18 
                 rS+i    gd++ep++
  KIR64620.1 201 RSTISQATGDALEPER 216
                 7888888899999875 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.1e-05      0.15      75     104 ..      65      94 ..      60     100 .. 0.86
   2 ?   -1.0   2.2      0.33   1.2e+03     135     159 ..     119     143 ..     106     151 .. 0.70
   3 ?   -2.3   0.0      0.84     3e+03      13      41 ..     208     235 ..     196     239 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.1e-05
        RP-C  75 aqLsralglsestlrrhlaaLveaGliirr 104
                  qL  alg+ + t+r+ ++aLv+aG++  r
  KIR64620.1  65 PQLVAALGVGRNTVREAVRALVHAGVLECR 94 
                 6899*********************99665 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.33
        RP-C 135 RaeElealaeevraerralrrlrer 159
                 R++E+ ++ +++++e+++l++lr++
  KIR64620.1 119 RMTEVVEVRRAFEVEAARLAALRRT 143
                 6777777778888888888777764 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.84
        RP-C  13 laeaieakkkg.vdkwqllralkeakaalg 41 
                 + +a+  +++  vd  +l+ a+++  +al 
  KIR64620.1 208 TGDAL--EPERyVDHARLVDAIRAGDPALA 235
                 33333..22225777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1768.75
//
Query:       KIR64621.1  [L=118]
Description: anti-sigma factor antagonist [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-20   70.5   0.0    9.8e-20   70.3   0.0    1.0  1  STAS      STAS domain
    1.9e-17   63.3   1.7    2.5e-17   63.0   1.7    1.2  1  STAS_2    STAS domain


Domain annotation for each model (and alignments):
>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0   1.1e-23   9.8e-20       2     117 .]       5     108 ..       4     108 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 1.1e-23
                 EEEEECTTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHHHTT CS
        STAS   2 idaeeiegililrldgpidfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevreklektg 100
                 +++e++ +++++ + g++d a+a+++++++++ +++++         + l++dl +vsf Ds+G+++++++++++   g+ v l+ ++  v + le +g
  KIR64621.1   5 VQTEQRGDVVVVSVAGELDMATAPQLQDQITDLLDKGR---------SRLVFDLAEVSFCDSTGLSVFVRAKNSCDEAGGVVRLAAPQRGVLRILEVSG 94 
                 57999********************************6.........9*************************************************** PP

                 CGGCC..SEEESSHHHH CS
        STAS 101 ffdeveeeklfltvhdA 117
                 + +++   ++++tv++A
  KIR64621.1  95 LVEVL---HTYPTVEQA 108
                 *****...******997 PP

>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   1.7   2.8e-21   2.5e-17       1      79 [.      16      95 ..      16      96 .. 0.98

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 2.8e-21
      STAS_2  1 LsLsGeldldtaaelreqllealaag.aevvvDlsgvervDsaalalLlalartarargrrlvlrglppalrrlldlyGl 79
                +s++Geld++ta++l++q  ++l  g +++v Dl++v ++Ds++l++++++++ ++++g+ ++l ++ ++++r+l+++Gl
  KIR64621.1 16 VSVAGELDMATAPQLQDQITDLLDKGrSRLVFDLAEVSFCDSTGLSVFVRAKNSCDEAGGVVRLAAPQRGVLRILEVSGL 95
                689********************9999****************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 899.50
//
Query:       KIR64622.1  [L=286]
Description: anti-sigma factor antagonist [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-24   85.8   1.8    2.8e-24   85.8   1.8    2.1  3  RsbRD_N   RsbT co-antagonist protein rsbRD N-terminal domain
    3.4e-10   39.6   0.1    1.1e-09   38.0   0.0    1.9  2  STAS      STAS domain
  ------ inclusion threshold ------
      0.056   12.2   0.0      0.091   11.6   0.0    1.2  1  RHSP      Retrotransposon hot spot protein
      0.057   13.8   7.2      0.078   13.3   0.1    3.8  3  STAS_2    STAS domain


Domain annotation for each model (and alignments):
>> RsbRD_N  RsbT co-antagonist protein rsbRD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   1.8   6.4e-28   2.8e-24       3     104 .]      13     110 ..      11     110 .. 0.96
   2 ?   -3.5   0.0       3.8   1.7e+04      36      45 ..     146     155 ..     136     163 .. 0.55
   3 ?   -2.5   0.0       1.9   8.4e+03      42      51 ..     187     196 ..     175     228 .. 0.54

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 6.4e-28
     RsbRD_N   3 elLrekkeailekWleevlatypiesagllseaelreqlrelldallaalaseqldleseeeeelrealdelsrsRarqgftpsetasfvfaLKealfe 101
                  lL+e+ e i+++W e v a+     +g+ls+aelr+q++el++a+++a++ +++dlese+  elr++l+elsr Rarqgft++eta  v+aLK++l+e
  KIR64622.1  13 GLLDEHAERITQRWTELVGASL----RGRLSQAELRRQVQELHRAVIEAARGGGFDLESESAGELRAVLAELSRGRARQGFTATETAISVYALKDVLLE 107
                 69********************....56*********************998888******************************************** PP

     RsbRD_N 102 vle 104
                 +le
  KIR64622.1 108 LLE 110
                 996 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.8
     RsbRD_N  36 elreqlrell 45 
                  + +q+++ll
  KIR64622.1 146 LIADQAEQLL 155
                 2344444444 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.9
     RsbRD_N  42 relldallaa 51 
                 ++ll+ l+++
  KIR64622.1 187 ERLLQTLVDT 196
                 5555555544 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.73   3.3e+03      60      74 ..     127     141 ..     123     147 .. 0.81
   2 !   38.0   0.0   2.4e-13   1.1e-09       4     116 ..     162     264 ..     159     265 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.73
                 EE-HHHHHHHHHHHH CS
        STAS  60 fiDssGvraLkeilk 74 
                  +D +G+ +++++++
  KIR64622.1 127 LVDQMGLFTFESFVR 141
                 589999999998876 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 2.4e-13
                 EEECTTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHHHTTCG CS
        STAS   4 aeeiegililrldgpidfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevreklektgff 102
                 ++  eg++ + l g +d a+a+ ++e+l +++ ++           + i+d+++v+ +D+  ++ + +++   +  g ++++++i+p++++++ ++g+ 
  KIR64622.1 162 VKIWEGVVAVPLVGTLDSARAQVVMERLLQTLVDTG--------SPYAIIDITGVPAVDTQVAQHILKTVVAARLMGADCIISGIRPQIAQTIVALGIE 252
                 566799***************************997........89**************************************************998 PP

                 GCC..SEEESSHHH CS
        STAS 103 deveeeklfltvhd 116
                        ++ +++d
  KIR64622.1 253 FGD--IATKASLAD 264
                 654..466666666 PP

>> RHSP  Retrotransposon hot spot protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     2e-05     0.091     294     407 ..      24     131 ..      15     149 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2e-05
        RHSP 294 kgrikkvGPllrqileeesykrrvakieeavdeissvdkesyakvlqtaaeWetdkvserlarvvrvkkengeecrnapvsay.leqkildklrvlldt 391
                 + + + vG  lr  l ++  +r+v+ ++ av e ++++        +++          +la + r +   g +++++++s y l++++l+ l    ++
  KIR64622.1  24 QRWTELVGASLRGRLSQAELRRQVQELHRAVIEAARGGGFDL----ESESAG---ELRAVLAELSRGRARQGFTATETAISVYaLKDVLLELLEADATD 115
                 668889999999999999999999999999999988875433....343333...3456789999999999************4466778889999999 PP

        RHSP 392 aelnkyvarkalrdka 407
                 + l++yva ++l d++
  KIR64622.1 116 TALRDYVAFSSLVDQM 131
                 **********999876 PP

>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   1.0      0.17   7.7e+02       3      24 ..      34      58 ..      33      92 .. 0.66
   2 ?   13.3   0.1   1.7e-05     0.078       3      79 ..     173     251 ..     171     252 .. 0.87
   3 ?    0.5   0.0      0.18   7.9e+02      66      79 ..     262     275 ..     254     280 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.17
      STAS_2  3 LsGeldldtaaelreqlleal...a 24
                L+G+l+ +++++  ++l +a+   a
  KIR64622.1 34 LRGRLSQAELRRQVQELHRAVieaA 58
                6666666666666666666554421 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.7e-05
      STAS_2   3 LsGeldldtaaelreqlleal.aag.aevvvDlsgvervDsaalalLlalartarargrrlvlrglppalrrlldlyGl 79 
                 L G ld ++a  + e+ll+ l  +g     +D +gv +vD+  ++ +l  + +ar  g    ++g +p+ +++   +G+
  KIR64622.1 173 LVGTLDSARAQVVMERLLQTLvDTGsPYAIIDITGVPAVDTQVAQHILKTVVAARLMGADCIISGIRPQIAQTIVALGI 251
                 78*****************776888445558***********************9999999999999999988877775 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.18
      STAS_2  66 lppalrrlldlyGl 79 
                 l +alr++l+l+G+
  KIR64622.1 262 LADALRHVLRLTGV 275
                 55677777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2223.15
//
Query:       KIR64623.1  [L=137]
Description: anti-sigma factor antagonist [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-06   27.8   0.4      2e-06   27.4   0.4    1.1  1  STAS      STAS domain


Domain annotation for each model (and alignments):
>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.4   1.1e-10     2e-06       6     102 ..       8      96 ..       4     108 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.1e-10
                 ECTTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHHHTTCG CS
        STAS   6 eiegililrldgpidfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevreklektgff 102
                 +i +il + ++ ++   +a +++e+l + +  +         ++ +i+d++a++ +Ds   r+L  i    k  + e v+v+++p+v+ +l  +g++
  KIR64623.1   8 KIGDILLVSIQVDMSDQTAVQLQEDLAERIVATG--------CHGVIIDITALDIVDSFVGRMLSTIASISKVLDAETVVVGMRPAVAITLVELGLS 96 
                 678899999******************9999996........*************************************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 975.19
//
Query:       KIR64624.1  [L=139]
Description: anti-sigma regulatory factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-09   38.5   0.0      2e-09   38.0   0.0    1.2  1  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
    2.3e-07   30.8   0.1    2.9e-07   30.5   0.1    1.1  1  HATPase_c_2     Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.049   14.0   0.1      0.075   13.4   0.1    1.3  1  Glucodextran_B  Glucodextranase, domain B
       0.16   11.5   0.1       0.24   10.9   0.1    1.2  1  ECH_2           Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   4.4e-13     2e-09       2     107 ..      41     135 ..      40     138 .. 0.91

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 4.4e-13
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE...TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEE CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikase...ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvese 97 
                 d+++L  + s+l  N + + + +g+ ev++   +     ++i   D+G+Gi   dl  l + +++       ggg GlGls +++lv+    e+ +++ 
  KIR64624.1  41 DQTKLVTAASELARNTLVY-GGGGSAEVSVVD-NgrrRGVRIVFADDGPGIADLDLA-LTDGYTT-------GGGLGLGLSGARRLVD----EFDIDTG 125
                 78899999**********9.999999999996.235689*************99999.7779999.......9***************....999**** PP

                 TTTEEEEEEE CS
   HATPase_c  98 pgrGttftft 107
                 pgrGt++t+t
  KIR64624.1 126 PGRGTRITVT 135
                 ********86 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.1   6.4e-11   2.9e-07       6     125 .]      19     136 ..      16     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 6.4e-11
  HATPase_c_2   6 ehvrtvrevaeavlrraglseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpg.fdpetlpdpteeepkeslkegGrGl 102
                  e+v  vr+ ++ v+ +++ls  +  ++  a++E+  N   ++  +    +v+v    + + +++++aD+Gpg  d+  +  ++     + +   G+Gl
   KIR64624.1  19 EDVVRVRQLVRTVAVAVRLSLVDQTKLVTAASELARNTLVYGGGGSA--EVSVVDNGRRRGVRIVFADDGPGiADLDLALTDGY----TTGGGLGLGL 110
                  6788899******999999999999******************8755..677776788888***********999987777655....4556666666 PP

  HATPase_c_2 103 alikglvDevey...dgegnvvtmsk 125
                     ++lvDe+++    g+g+ +t++k
   KIR64624.1 111 SGARRLVDEFDIdtgPGRGTRITVTK 136
                  6689********87656689888876 PP

>> Glucodextran_B  Glucodextranase, domain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.7e-05     0.075       4      61 ..      38      98 ..      35     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.7e-05
                    EEEES-SEEE-SS...SEEEEEEEE-SSEEEEEETTEEEEE--B...TT..EEEEEEE--S CS
  Glucodextran_B  4 svtapealstads...atavvsGttaaakvyvsvnGtiteapltpagdGtstfsldlalta 61
                    s+    +l ta s    ++ v G   +a v v  nG      +  a dG     ldlalt 
      KIR64624.1 38 SLVDQTKLVTAASelaRNTLVYGGGGSAEVSVVDNGRRRGVRIVFADDGPGIADLDLALTD 98
                    55666778888773334899***************************************96 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   5.3e-05      0.24      91     116 ..      94     119 ..      92     122 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.3e-05
                 EEEE-BEEETHHHHHHTTSSEEEE-T CS
       ECH_2  91 valmdGivmGgGvGlsvhgsfrvvte 116
                 +al dG++ GgG+Gl ++g  r v e
  KIR64624.1  94 LALTDGYTTGGGLGLGLSGARRLVDE 119
                 699****************9999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 942.78
//
Query:       KIR64625.1  [L=513]
Description: stage II sporulation protein E [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-40  138.9   2.9    4.2e-40  137.7   2.9    1.6  1  SpoIIE        Stage II sporulation protein E (SpoIIE)
    5.5e-23   81.3   0.0    1.3e-22   80.0   0.0    1.7  1  Response_reg  Response regulator receiver domain


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   2.9   4.7e-44   4.2e-40       3     192 ..     333     512 ..     332     513 .] 0.89

  Alignments for each domain:
  == domain 1  score: 137.7 bits;  conditional E-value: 4.7e-44
                 TEEEEEEEECSSSSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEESSSSEEEEETTSTEEEEE-- CS
      SpoIIE   3 grlalvvgDvvGhGleAalimgllrsalrelataglepaevlkrlnralardleeeerfaTavlavydpstgkleyanaGhpppllvrpdggtklllas 101
                 + l++++gDv Gh+l+Aa +m++lr a+r++a +g++p  +l+r+++++ + l+ e  +aT++++ ++p tg++++a+aGh p l+ r+  g +++ + 
  KIR64625.1 333 DELLVAIGDVAGHSLHAATVMAELRHAVRAYAVEGHPPGVILTRVDELMRTLLPGE--LATICVLQLHPGTGHVRLASAGHLPALISRD--GRVEYVQH 427
                 67899********************************************7777777..*******************************..77777788 PP

                 SS--TTTSSST-EEEEEEE--TTEEEEEESCCCCSSS..HHHHHHCCCHHCHHHHCT.....HCCHHHHHHHHHHHHTTSSSSS-EEEEEEEE CS
      SpoIIE 102 tglplGilpeadyetaelelepgdtlllyTDGvtEar..dsdgelfgkerllallasaegesleelldalveellelgsgeleDDitllvlrv 192
                 + ++lG+     + + e+ l++g+tl+lyTDG++E+r  ++d++l  ++r +++++    ++l+ ++++lv el + +  e++DD++++++r+
  KIR64625.1 428 SAPLLGV-RVDRPADLEFVLPAGSTLVLYTDGLIERRdaTIDEGLAALARCAETVD----DDLDGFCQRLVVELAP-T--EIQDDVAVVAVRR 512
                 8899***.55667789*********************7777777755555555555....56**************.4..8***********8 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   1.5e-26   1.3e-22       1     110 [.       8     117 ..       8     119 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 1.5e-26
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTS.HHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahse.eedavealkagadd 96 
                   vl+vdD+++ r ll ++l ++g+  + eae+g eal+ +  + +dl++lD+++p+++G+e++++i++ +p +pvi ++ah+   +d+ ++l  gad 
    KIR64625.1   8 VLVVDDSRTKRYLLVSWLSRAGF-ATLEAESGGEALARVGVDPIDLVVLDVRLPDLTGFEVCEQIKKAHPAMPVIHVSAHAVdVNDRAQGLTRGADA 103
                   8**********************.999***************************************************998659************* PP

                   EEESSG-HHHHHHH CS
  Response_reg  97 flsKpfdpeeLlka 110
                   +l+ p++p+eL++ 
    KIR64625.1 104 YLAEPIEPDELVAT 117
                   ***********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3556.77
//
Query:       KIR64626.1  [L=76]
Description: hypothetical protein TK50_03040 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 564.05
//
Query:       KIR64627.1  [L=63]
Description: hypothetical protein TK50_03050 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-22   79.6   0.5    1.4e-22   79.4   0.5    1.0  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.5   8.1e-27   1.4e-22       1      53 [.       6      59 ..       6      60 .. 0.90

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 8.1e-27
      DUF397  1 atWrKSsySgggggnCVEvaalpda......vavRDSkdpdgpvLtftpaewaaFlagv 53
                a+Wr Ss+S++ ggnCVEv     a      v vRDSkd++gpvL+f pa+w aFl+ +
  KIR64627.1  6 ARWRTSSRSNSTGGNCVEV-----AgnlpgvVVVRDSKDRTGPVLAFAPAAWGAFLTRL 59
                69*****************.....445556689***********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 569.60
//
Query:       KIR64628.1  [L=316]
Description: hypothetical protein TK50_03055 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-18   65.7   0.2      7e-18   64.7   0.2    1.5  1  HTH_18    Helix-turn-helix domain
    1.7e-07   31.1   0.0    1.7e-05   24.8   0.0    2.3  2  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara
  ------ inclusion threshold ------
        0.3   11.3   2.3         35    4.6   0.2    3.2  2  HTH_28    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.2   1.2e-21     7e-18       1      80 [.     223     302 ..     223     303 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 1.2e-21
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 la++ g ++r+Lqrlf +++g+ pk ++rr+R+++A +  ++    + a++A++lG++d+++++r f +++g+tP++y r
  KIR64628.1 223 LARRHGTTTRRLQRLFLDHVGVGPKWVIRRYRIQEAIEHAASGGPVDWAAVAADLGYADQAHLIREFAAATGLTPAAYAR 302
                 89************************************9976556788******************************87 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0094        56       9      38 ..     218     247 ..     213     251 .. 0.88
   2 !   24.8   0.0   2.9e-09   1.7e-05       9      40 ..     268     300 ..     260     302 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0094
                 --HHHHHHHTTSSHHHHHHHHHHHSSS-HH CS
    HTH_AraC   9 ltiediAdelgfSrsyFsrlFkketGmtPs 38 
                 l+++d+A   g+  + ++rlF   +G+ P+
  KIR64628.1 218 LRVDDLARRHGTTTRRLQRLFLDHVGVGPK 247
                 789******************999998886 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 2.9e-09
                 --HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHH CS
    HTH_AraC   9 ltiediAdelgf.SrsyFsrlFkketGmtPsqy 40 
                   ++ +A+ lg+ ++ +++r F ++tG tP +y
  KIR64628.1 268 VDWAAVAADLGYaDQAHLIREFAAATGLTPAAY 300
                 56999*************************998 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1    0.0059        35      13      31 ..     217     236 ..     211     237 .. 0.83
   2 ?    4.6   0.2    0.0058        35       4      24 ..     257     277 ..     256     302 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0059
      HTH_28  13 h.svreaArelgisrrtvyr 31 
                 + +v+++Ar++g++ r+++r
  KIR64628.1 217 VlRVDDLARRHGTTTRRLQR 236
                 557999*******9999988 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0058
      HTH_28   4 eiikllaaGhsvreaArelgi 24 
                 e+i+++a+G++v++aA +  +
  KIR64628.1 257 EAIEHAASGGPVDWAAVAADL 277
                 89********99996654443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2542.34
//
Query:       KIR64629.1  [L=189]
Description: hypothetical protein TK50_03060 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-12   45.8  12.8    1.7e-11   44.9   9.4    2.4  2  MDMPI_N   Mycothiol maleylpyruvate isomerase N-terminal domai
  ------ inclusion threshold ------
      0.036   14.0   0.0      0.046   13.6   0.0    1.2  1  DinB      DinB family


Domain annotation for each model (and alignments):
>> MDMPI_N  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   9.4   1.9e-15   1.7e-11       2     141 .]      10     126 ..       9     126 .. 0.80
   2 ?   -2.4   0.1      0.78     7e+03      21      23 ..     161     163 ..     134     182 .. 0.55

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 1.9e-15
     MDMPI_N   2 reewaalaalvagLtdeqwaapspcpGWtvadlvaHlarsaralaaalaaegaesalardaaaalvtaadaeavdlaaslapeallaafraavtrlaaa 100
                 ++++ +  a+v++++ +q++ p+pc+++tv+dl++Hl     ++ a++a++                    ++ + +  +  +  +++f+a ++rl aa
  KIR64629.1  10 ADAAPRAVAVVRAISGDQFDLPTPCADYTVRDLLGHLFQVVVNFQALAARQ-------------------PADWADKTDRLTDGWRDRFAAETERLVAA 89 
                 5666678899*************************************8874...................66677777777888899999999999999 PP

     MDMPI_N 101 laalppdaiadrlgipggprslgeflrtrlvEavvHglDla 141
                 +a+      a +++ pg   +   +  + l +++vH++Dla
  KIR64629.1  90 WAD----PAALEGVSPGMGLPQETVGDMALIDLTVHAWDLA 126
                 985....444444333333333449**************97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.78
     MDMPI_N  21 aap 23 
                 aap
  KIR64629.1 161 AAP 163
                 222 PP

>> DinB  DinB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.1e-06     0.046      15      99 ..      10      92 ..       1     110 [. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.1e-06
                HHHHHHHHHHHCT--CCCTT--SSTTS--HHHHHHHHHHHHHHHHHHHHH..SSSGGGT---------HHHHHHHHHHHHHHHHC CS
        DinB 15 qwardrtldaiaaLpdeelkaengegfqsvkqtlnHvldveelwlsrlegeegapavddqterkeleeldalrealderliafld 99
                ++a+ r   +++a++ ++++ +      +v+++l H+ +v   + ++ +   + + + d+t+r + ++ d + ++ ++ ++a++d
  KIR64629.1 10 ADAAPRAVAVVRAISGDQFDLPTPCADYTVRDLLGHLFQVVVNFQALAAR--QPADWADKTDRLTDGWRDRFAAETERLVAAWAD 92
                6677788899***********************************99888..9999**************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1361.43
//
Query:       KIR64630.1  [L=94]
Description: prevent-host-death protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-25   86.7   0.9    7.7e-25   86.5   0.9    1.1  1  PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin 
     0.0016   18.5   0.1     0.0018   18.3   0.1    1.2  1  PHD_like         Antitoxin of toxin-antitoxin, RelE / RelB, T
  ------ inclusion threshold ------
      0.056   13.4   0.0      0.086   12.8   0.0    1.3  1  IPI_T4           Nuclease inhibitor from bacteriophage T4
      0.062   12.6   0.0      0.082   12.2   0.0    1.1  1  PhoU_div         Protein of unknown function DUF47
      0.068   13.3   0.0       0.13   12.4   0.0    1.4  1  E2_bind          E2 binding domain
       0.13   11.3   0.0       0.15   11.1   0.0    1.0  1  DUF2330          Uncharacterized protein conserved in bacteri


Domain annotation for each model (and alignments):
>> PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.9   2.6e-28   7.7e-25       1      73 [.       1      72 [.       1      74 [. 0.97

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 2.6e-28
                     CEEEEHHHHHHTHHHHHHHHHHHT-EEEEEETTEEEEEEEEHHHHHHHHH.HHHHHCSHHHHHHHHHHHHHHH CS
  PhdYeFM_antitox  1 mkivsiseakanlselldeveegeepviItrrGkpvaVlvsleeyerlqeltekllslplnaerlaesgaeve 73
                     m++v++se ++nl+++ld v+++ e+v++tr G+++aV++sl+eye+l+e t++l+ +p+na+rl+e+ +e++
       KIR64630.1  1 MRTVPYSEVRQNLAKMLDHVVNDAEEVVVTRSGREAAVIISLREYESLKE-TAYLMASPANARRLNEAVEELR 72
                     9*************************************************.****************998876 PP

>> PHD_like  Antitoxin of toxin-antitoxin, RelE / RelB, TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   5.9e-07    0.0018       4      55 ..       3      53 ..       1      71 [. 0.84

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.9e-07
                EEEHHHHHHTHHHHHHHHHHT.--EEEEETT..EEEEEEEHHHHHHHT...T CS
    PHD_like  4 elsitearkefsalidqvvkeykpvlvkrnrkkekvsiistdllkelldrgy 55
                ++  +e+r+++ +++d+vv++ ++v+v+r    e   iis    + l + +y
  KIR64630.1  3 TVPYSEVRQNLAKMLDHVVNDAEEVVVTRSG-REAAVIISLREYESLKETAY 53
                66789************************65.78889999888887776666 PP

>> IPI_T4  Nuclease inhibitor from bacteriophage T4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.9e-05     0.086       5      35 ..      25      55 ..      22      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.9e-05
                HHHHHH-SSS-SSEEE-TTT--EEES-SSTT CS
      IPI_T4  5 sevikankgregkpmislvdgeeikgtvylg 35
                 ev+ +  gre   +isl + e +k t yl 
  KIR64630.1 25 EEVVVTRSGREAAVIISLREYESLKETAYLM 55
                699999***********************95 PP

>> PhoU_div  Protein of unknown function DUF47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.7e-05     0.082      81     146 ..      11      79 ..       8      84 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.7e-05
    PhoU_div  81 lelveslDeildvlediamlvtlrkvefpeelkd....eflallkktveaiealaevieeleklletals 146
                  +l++ lD +++ +e+++++ + r+ ++  +l++    +  a+l+++   ++ l+e++eel   +++ ++
  KIR64630.1  11 QNLAKMLDHVVNDAEEVVVTRSGREAAVIISLREyeslKETAYLMASPANARRLNEAVEELRN-GGGEMR 79 
                 5899********************99988888763322235799999999***********96.666666 PP

>> E2_bind  E2 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.4e-05      0.13      46      79 ..       8      41 ..       3      43 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.4e-05
     E2_bind 46 atrpNLekkLkeLvedgeeitvtDkklpsslslr 79
                + r+NL k L   v+d ee++vt +  ++++ ++
  KIR64630.1  8 EVRQNLAKMLDHVVNDAEEVVVTRSGREAAVIIS 41
                789********************88777666555 PP

>> DUF2330  Uncharacterized protein conserved in bacteria (DUF2330)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     5e-05      0.15      13      59 ..      15      61 ..      11      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5e-05
     DUF2330 13 kaddklrneaekvvlarDgdkttilmrldlkgdakefAlvvPvPtva 59
                k  d++ n+ae+vv++r g++  ++++l    + ke A ++  P++a
  KIR64630.1 15 KMLDHVVNDAEEVVVTRSGREAAVIISLREYESLKETAYLMASPANA 61
                5668999*********************9999************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 726.67
//
Query:       KIR64631.1  [L=178]
Description: PadR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-15   55.6   0.0    5.7e-15   55.0   0.0    1.3  1  PadR             Transcriptional regulator PadR-like family
     0.0013   19.4   0.1     0.0026   18.4   0.1    1.5  1  Vir_act_alpha_C  Virulence activator alpha C-term
     0.0017   18.5   0.4     0.0041   17.2   0.0    1.6  2  Replic_Relax     Replication-relaxation
  ------ inclusion threshold ------
      0.012   15.5   0.0       0.03   14.3   0.0    1.6  1  BLACT_WH         Beta-lactamase associated winged helix domai
      0.016   15.3   0.0        0.3   11.3   0.0    2.2  2  HTH_34           Winged helix DNA-binding domain
      0.072   12.9   0.0       0.23   11.4   0.0    1.9  2  HxlR             HxlR-like helix-turn-helix


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   1.9e-18   5.7e-15       1      74 [.       7      80 ..       7      81 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 1.9e-18
                HHHHHCCS-EEHHHHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHH CS
        PadR  1 iLalleeqpsyGyeiikeleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrela 74
                +L+ll+e++ +Gye++++ ++++  ++ l  G++Y +L rLe++glv++  ++ + gp r  Y+lT+aGr++la
  KIR64631.1  7 LLGLLAEGDKHGYELKRAHDRRLPRARPLAFGQVYATLGRLERDGLVAAAGQDRDAGPDRTAYALTPAGRDALA 80
                799********************************************************************997 PP

>> Vir_act_alpha_C  Virulence activator alpha C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   8.8e-07    0.0026      14      75 ..     107     168 ..      97     170 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.8e-07
  Vir_act_alpha_C  14 vldpealieeLerrreeheekLaeyeeieerleeargqylvLrrgiryeeawieWcdealel 75 
                      v d+  ++  L ++r++h+++L+e+++ + + ++++ + +  +++i++  a ++W+  +le+
       KIR64631.1 107 VADTGHVRSYLVAQRRAHTDRLRELTAVKTDPSASLDDVVAADYAIAHLDADLRWLHTTLER 168
                      56788899********************999999999999******************9986 PP

>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.4e-06    0.0041      25      74 ..      31      84 ..      19     101 .. 0.74
   2 ?   -2.1   0.0       1.1   3.4e+03      13      36 ..     111     133 ..     100     140 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.4e-06
  Replic_Relax 25 a.......tarrrLarLrelgllsrlrkrvggarggsepyvYaLtpkGarllaaqra 74
                  +       +++  L rL++ gl+++  +    +++g +++ YaLtp+G+++laa  a
    KIR64631.1 31 RarplafgQVYATLGRLERDGLVAAAGQD---RDAGPDRTAYALTPAGRDALAAWLA 84
                  3556777789***************6666...5677789*************66544 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.1
  Replic_Relax  13 rqiarllfashratarrrLarLre 36 
                    +++ +l a++ra   +rL++L++
    KIR64631.1 111 GHVRSYLVAQRRA-HTDRLRELTA 133
                   4555555555555.5566666654 PP

>> BLACT_WH  Beta-lactamase associated winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     1e-05      0.03      16      43 ..      31      58 ..      29      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1e-05
    BLACT_WH 16 slhpaAergvlahLeKLeeeGkVkregd 43
                + +p A  +v+a+L +Le++G+V+ +g+
  KIR64631.1 31 RARPLAFGQVYATLGRLERDGLVAAAGQ 58
                6789999*****************9986 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.9e-05       0.3      29      77 ..      38      87 ..      22      90 .. 0.78
   2 ?    2.1   0.0     0.074   2.2e+02       7      26 ..     115     134 ..     112     167 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.9e-05
      HTH_34 29 gnLsvhlkkLekagYievd.kefkgkkprtllriTpeGreafkkyvkaLk 77
                g+ ++ l  Le  g +     + + +  rt + +Tp+Gr+a ++ +++++
  KIR64631.1 38 GQVYATLGRLERDGLVAAAgQDRDAGPDRTAYALTPAGRDALAAWLAEVE 87
                67777888888888887661444556679************999888765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.074
      HTH_34   7 syLasvdeadfvelkealea 26 
                 syL+++++a   +l+e + +
  KIR64631.1 115 SYLVAQRRAHTDRLRELTAV 134
                 89*************98865 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.5e-05      0.23      38      71 ..      42      77 ..       6      88 .. 0.82
   2 ?   -2.2   0.0       1.3   3.9e+03      35      45 ..     123     133 ..     117     147 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.5e-05
                HHHHHHHHTTSEEEEE..ESSSS-EEEEEE-TCGGG CS
        HxlR 38 qrLreLeqdglierev..ypevPpkveYsltekGrs 71
                ++L +Le+dgl+ +     +  P +  Y lt++Gr+
  KIR64631.1 42 ATLGRLERDGLVAAAGqdRDAGPDRTAYALTPAGRD 77
                57999*******9865115678************96 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.3
                 HHHHHHHHHHH CS
        HxlR  35 mLaqrLreLeq 45 
                   + rLreL +
  KIR64631.1 123 AHTDRLRELTA 133
                 55778888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1310.93
//
Query:       KIR64632.1  [L=487]
Description: hypothetical protein TK50_03080 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-06   27.4   3.1     0.0017   18.7   0.0    5.2  5  FtsX          FtsX-like permease family
  ------ inclusion threshold ------
      0.027   13.7   0.2      0.027   13.7   0.2    4.9  4  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   1.9      0.11   9.9e+02      26      46 ..      25      45 ..       7      96 .. 0.56
   2 !   18.7   0.0     2e-07    0.0017       3      87 ..     104     186 ..     102     195 .. 0.78
   3 ?    2.4   0.2     0.025   2.2e+02      34      87 ..     216     269 ..     212     278 .. 0.65
   4 ?   -3.5   2.3       1.7   1.5e+04      62      62 ..     347     347 ..     299     375 .. 0.45
   5 !   16.4   1.4   1.1e-06    0.0095       1      90 [.     382     477 ..     382     482 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.11
        FtsX 26 llitlvalviGlglgllaaql 46
                +l +++a+++Gl++++++a +
  KIR64632.1 25 ALSAALATLAGLAALTVLAIP 45
                344555666666666666655 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 2e-07
        FtsX   3 eigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallaglls 87 
                  ++ lr  G++ +qv +l  +e+ + +l+++v+Gl++ l a +l  d  ++     +l+  + +++v++++ +l l a++a++ +
  KIR64632.1 104 RLAALRLAGATPGQVTRLAALETGVASLLGTVVGLVVFLGAHEL-LDRPDADGR-LALPTDVLPSPVALAATVLGLPAVAAAATA 186
                 5789******************************9998888887.555555544.788888888888888877777777774433 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.025
        FtsX  34 viGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallaglls 87 
                 ++  g+g++a +     +l+    +++ ++++++  + +++ l+ ++l+ag++s
  KIR64632.1 216 LVPAGVGAFAGYGPLLRWLERHEVQAPLPYLPILVTAGGLAALVGTVLAAGWFS 269
                 444466777776655555555555777777777777777777777777777766 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 1.7
        FtsX  62 i 62 
                 +
  KIR64632.1 347 F 347
                 1 PP

  == domain 5  score: 16.4 bits;  conditional E-value: 1.1e-06
        FtsX   1 kreigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfs......selkisidlitvliiivlllllallagllsisk 90 
                 +r ++ l a G+ ++ + + + +++l+ t++a +++l +gll+  +l   +++s +       +   +  +l  v +++v ++ l++++gll ++ 
  KIR64632.1 382 RRAYAALVAQGVPRGVLGRSVAWQALAPTVPAVLLALTVGLLLGRFLAGPVSTSTVDgakrfvMPGVPLEQLALVGAGAVAAVALTVAVGLLFLRA 477
                 57899999****************************999999999977766666554466666888888888888888888888888888876655 PP

>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2     3e-06     0.027     169     206 ..      10      47 ..       7      59 .. 0.85
   2 ?    6.9   0.4   0.00035       3.1      70     163 ..     112     206 ..     104     211 .. 0.66
   3 ?   -4.0   7.1      0.74   6.7e+03      70      76 ..     260     266 ..     213     330 .. 0.49
   4 ?    2.8  12.2    0.0059        53      16     151 ..     342     476 ..     339     484 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-06
  BPD_transp_2 169 ralGinvkrvklltfvisgalAglaGallalllgsipp 206
                   +++G +++ v++++ ++s+alA+laG++  + l++  p
    KIR64632.1  10 ALAGTRTDTVRVVLTALSAALATLAGLAALTVLAIPTP 47 
                   679***********************999888877766 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00035
  BPD_transp_2  70 glllgllvlrlkvdeliitllllsvlvgltlllltgitsgvkgqssvkellgfagallsflsaviv..llalllvlavllllrrtrfGralravge 163
                   g+  g  +    ++  +++ll+++v ++++l   +++   +        ++++ +  +  +  v+   ++a+++++++l +++ t+fG+  ra ++
    KIR64632.1 112 GATPGQVTRLAALETGVASLLGTVVGLVVFL-GAHELLDRPDADGRLALPTDVLPSPVALAATVLGlpAVAAAATALLLRRVVTTPFGVVRRARRD 206
                   5555544444445555556666666666666.66666666666665555555555555555555447799*******************9999876 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 0.74
  BPD_transp_2  70 glllgll 76 
                   g +l++ 
    KIR64632.1 260 GTVLAAG 266
                   2222211 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.0059
  BPD_transp_2  16 AlGlalvfgiaGvinlghggfmalGayvaalllalllsl...lllallvallvgaavglllgllvlrlkvdeliitllllsvlvgltlllltgitsg 109
                   + G ++    +G+++l+++ +++++a   +++l+ +       ++al++  +  +++g  ++++ l   v+ ++ +l + ++l ++++   +  +  
    KIR64632.1 342 SAGDTFYLDTIGLVDLAVAVAVTIAAGGLLVALVEGIVArrrAYAALVAQGVPRGVLGRSVAWQALAPTVPAVLLALTVGLLLGRFLA---GPVSTS 435
                   566677777899************9999999999999888988888888888889999999988888888877777666666655555...555555 PP

  BPD_transp_2 110 vkgqssvkellgfagallsflsavivllalllvlavllllrr 151
                   +   ++   + g++ + l  ++a   + a++l++av ll++r
    KIR64632.1 436 TVDGAKRFVMPGVPLEQLALVGAGA-VAAVALTVAVGLLFLR 476
                   5555566666666666666665544.5555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3354.46
//
Query:       KIR64633.1  [L=315]
Description: threonine dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-84  282.4   5.7    5.2e-84  282.1   5.7    1.0  1  PALP           Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
       0.02   14.7   0.3      0.036   13.9   0.3    1.5  1  DFP            DNA / pantothenate metabolism flavoprotein
       0.18   11.7   0.1       0.44   10.4   0.1    1.6  1  Lactamase_B_3  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.1   5.7   8.7e-88   5.2e-84       3     294 .]      18     300 ..      16     300 .. 0.96

  Alignments for each domain:
  == domain 1  score: 282.1 bits;  conditional E-value: 8.7e-88
                 GCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT CS
        PALP   3 lgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllG 101
                 + + +TPl+++p         l+lK Esl+p gSfK+Rga++++arl++g +a++vv+ ssGNhg+alA+aa+++G+++t+vvp++a++ kva++r++G
  KIR64633.1  18 PTVLRTPLLAAPWD-----DGLWLKPESLQPVGSFKLRGATHAVARLDPGARARGVVTHSSGNHGQALAYAARAAGVPCTVVVPDGAPEVKVARMRAFG 111
                 56678888777774.....45****************************************************************************** PP

                 -EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTT CS
        PALP 102 aevvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalar 200
                 a+v +v+  + +++a a+++ ae +ga+lv++fd+  +i+g+gt+g+Ei+++l +++d+v+vpvGgGgl++G+a+++++ rp+  v+gvep  ++   +
  KIR64633.1 112 AQVLLVP--PARRLAEAQRIVAE-TGATLVPPFDDRRIIAGQGTVGAEIVADL-PDIDVVLVPVGGGGLASGVATAVRALRPSAAVYGVEPLLAADARD 206
                 ******4..477777799*****.*****************************.6******************************************** PP

                 CCS..S.SS..B....SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTCEEEEEEE-B CS
        PALP 201 slragrrvtvpvs...dtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkegdrvvviltg 294
                 sl+agr+vt++v+   +t+adgl+++  sel++++l++ +d ivtv++ee+ +a+ +l r++++vveps+a+a aa  l +a el++g r+v+++tg
  KIR64633.1 207 SLAAGRVVTWDVEltyRTCADGLRTN-LSELTLAHLRDRLDGIVTVTEEEIRAAAGRLIREARLVVEPSGAVATAAR-LFRADELPPG-RTVAVVTG 300
                 **************************.**************************************************.**********.******98 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3     6e-06     0.036      20      52 ..      65      97 ..      51     138 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6e-06
                TEEEEE----HHHHHHHHHHHHTT-EEEEEE-S CS
         DFP 20 VRfisNrSSGkmGyalAeaaaarGaeVtlvsgp 52
                 R +  +SSG  G alA aa+a+G   t+v   
  KIR64633.1 65 ARGVVTHSSGNHGQALAYAARAAGVPCTVVVPD 97
                588889*********************999754 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   7.4e-05      0.44     123     150 ..     158     186 ..     147     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7.4e-05
  Lactamase_B_3 123 lkelgrvDvvltPvgg.pltlgqeealel 150
                     + l ++Dvvl+Pvgg +l +g ++a+++
     KIR64633.1 158 VADLPDIDVVLVPVGGgGLASGVATAVRA 186
                    577889**********7788887777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2170.88
//
Query:       KIR64634.1  [L=698]
Description: protease 2 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.8e-103  345.5   0.0   4.7e-103  345.2   0.0    1.1  1  Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propel
    1.5e-62  210.8   0.0    2.2e-62  210.3   0.0    1.2  1  Peptidase_S9    Prolyl oligopeptidase family
    0.00066   18.4   0.0      0.001   17.8   0.0    1.3  1  AXE1            Acetyl xylan esterase (AXE1)
     0.0025   17.4   0.6      0.016   14.8   0.2    2.1  2  Peptidase_S15   X-Pro dipeptidyl-peptidase (S15 family)
     0.0042   17.0   0.0      0.008   16.0   0.0    1.4  1  Abhydrolase_3   alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.022   14.2   0.7      0.039   13.4   0.7    1.3  1  Esterase_phd    Esterase PHB depolymerase
      0.066   13.2   2.0       0.12   12.3   0.3    2.2  2  PD40            WD40-like Beta Propeller Repeat
       0.14   11.8   0.0       0.23   11.1   0.0    1.3  1  Esterase        Putative esterase


Domain annotation for each model (and alignments):
>> Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.2   0.0  2.1e-106  4.7e-103       1     412 [.       8     415 ..       8     417 .. 0.92

  Alignments for each domain:
  == domain 1  score: 345.2 bits;  conditional E-value: 2.1e-106
                     ------TT.EEEETTEEEE-TTGGGGSTTSHHHHHHHHHHHHHHHHHHCTST.CHHHHHHHHHHHT-S-EE---EEETTEEEEEEE-SS-SS-EE CS
  Peptidase_S9_N   1 PetardesvvdelhgdkvsDpYrWLeDddspetkayleaenkyteevlaqlkelrekikeeitklikeddisapfrkgkyyyysrneggknqsvl 95 
                     P+++r++s  +++hgd+v+D+Y+WL  +d+pet a+l+aen++te+++a+l+elr++++ee   +++e+d+s+p+rkg+ +yy+r+++g+++ v+
      KIR64634.1   8 PVAKRVPS-ERTHHGDTVVDEYAWLAAKDDPETIAHLTAENAHTEARTAHLAELRNTLFEETRRRTQETDLSVPTRKGDHWYYTRTVEGQQYGVH 101
                     66777777.99************************************************************************************ PP

                     EEE...CSTS-TT.............S-EEEEE-GGGGSTTS-.EEEEEEEE-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEE CS
  Peptidase_S9_N  96 yrq...dalskeg.............eeeevlLDpNtlsedgtfvalgefavsedgkllAyslsksGsdwytirvkdietgedlpdeledvkfsg 174
                     +r+   d     g             + eevlLD N l+e+++f++lg+f+vs+dg+ lAys+++sG+++ t+rvkd++tge l+de+ ++  +g
      KIR64634.1 102 CRRavrD-----GetdppvsvdgaplDGEEVLLDGNLLAEGHDFFSLGAFDVSPDGRWLAYSTDFSGDERFTLRVKDLTTGEVLADEVPGTF-YG 190
                     ***4441.....2333344455589999*************************************************************975.55 PP

                     EEECTTSSEEEEEESS-SSS-TSTSB-S-BEEEEEETTS-GGG-EEEES-TTGTTBEEEEEE-TTSSEEEEEEESSSS--EEEEEEGGGTSS--E CS
  Peptidase_S9_N 175 ivWaadekgffYtrydkedersdtdtnlnqkvyrhkLGtaqseDelvfeeeeepkwllgaersedgkylfissasgtdtnelyvldlekeskkvl 269
                      +W ad++ +fY+++d +  r++       +v+rh++Gt+ +eD++v++ e+++++ +g+e+++++k+++i++ s++ t+e+ v+++ ++++++ 
      KIR64634.1 191 TAWSADASVLFYVTVD-DAWRPH-------RVWRHRIGTPSTEDVVVHQ-EDDERFWVGVELTRSEKFVLIDIHSKI-TSEVLVIPAGNPTGEPA 275
                     ****************.999999.......*******************.777777788******************.*************9999 PP

                     EEEESSSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSSSGGGEEEEE--.SSCEEEEEEECTTEEEEEEEETTEEEEEEEETTTS-.EEEE CS
  Peptidase_S9_N 270 klvdnrfdaeysvehnegdrfliltndgapnfrlvsvdlndpspsewkelvperekvvleeitvfknylvvsyrkdvlsrvqvvdlkngkvllfe 364
                      + ++r + eysveh+ g+rflil+nd+a  f+l  +  + p   +w  l+p++    le+++ f+++lvvs r ++l+ ++v +++ g+   ++
      KIR64634.1 276 SVAPRRQGVEYSVEHH-GHRFLILHNDDAEDFALAYTSADAPG--DWVPLIPHTPGTRLESVDAFADHLVVSLRTNGLTGLRVLPVGGGDGHDID 367
                     999996666*******.9************************9..****************************************9988886666 PP

                     EB-SSSSEEEEEE--TT-SEEEEEEEETTCEEEEEEEETTTTCEEEEE CS
  Peptidase_S9_N 365 vplpgvgsvssasgekedselfysfsSfltPstiykldlatgelellk 412
                     +p p +++  +++ e++++++++++ S++ P+++y++dl t el+l +
      KIR64634.1 368 FPEPLYSVGLDSNPEYRTRQVRLRYASLVAPESVYDYDLVTRELTLRR 415
                     666666666777999****************************99865 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.3   0.0   9.8e-66   2.2e-62       2     210 ..     481     696 ..     480     698 .] 0.97

  Alignments for each domain:
  == domain 1  score: 210.3 bits;  conditional E-value: 9.8e-66
                   ---.HHHHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE CS
  Peptidase_S9   2 sfs.selqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevp 97 
                    fs  +l+ll drG+v++va++rG+g+ G+ ++d+gk   ++n+f+Df+a+a++l+k g+++++rl+++G+S+GG+l+ga++n +pd F+++va+vp
    KIR64634.1 481 WFSvARLSLL-DRGVVFAVAHVRGGGELGRRWYDQGKMLAKKNTFTDFVACARHLVKSGWTSADRLVARGASAGGLLMGAVANLAPDAFAGVVAQVP 576
                   6888899999.************************************************************************************** PP

                   ---CCCHHCSTTS.THH.HCCCC--TTTCHHHHHHHHHH-CGGG--..---EEEEEEETT-SSS-THHHHHHHHHHH..--S-SEEEEEETTS-SST CS
  Peptidase_S9  98 vvdvlrydsdtdl.lte.eymewgnpeeneegykelspyspldnvk..aypplLlihGlaDdrvppaealklvaaLq..kkgknvlllifpdegHgv 188
                   +vd l++ +d++l lt  e++ewgnp +++e y ++++y+p++nv+   yp++L +++l+D+rv + e++k++a+L+    + ++ll++++++gHg+
    KIR64634.1 577 FVDPLTSILDPSLpLTVtEWEEWGNPLDDPEVYAYMKSYAPYENVAavDYPAILAVTSLNDTRVLYHEPAKWIARLRavAPQGDYLLKTEMGAGHGG 673
                   **************9999***********************************************************9888889************* PP

                   TSSHHHH.HHHHHHHHHHHHHCT CS
  Peptidase_S9 189 gkprakv.eelarllaFlkealg 210
                    ++r+   +e a + a++++ lg
    KIR64634.1 674 PSGRYDSwREEAFVNAWILDRLG 696
                   ******************98876 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.5e-07     0.001     151     208 ..     520     578 ..     461     598 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.5e-07
                 HHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHH-SS-.SEEEEES-SS CS
        AXE1 151 yrrvflDavrlveivaslpevDeeRvavlGasqGGalalavaalekri.kavvadyPfL 208
                  ++ f+D v  ++ +    ++  +R+++ Gas GG l  ava l +++ + vva++Pf+
  KIR64634.1 520 KKNTFTDFVACARHLVKSGWTSADRLVARGASAGGLLMGAVANLAPDAfAGVVAQVPFV 578
                 4789****************************************9875278*******7 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2     7e-06     0.016       1     140 [.     444     582 ..     444     589 .. 0.75
   2 ?   -0.1   0.0      0.25   5.7e+02     209     256 ..     606     655 ..     594     670 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7e-06
                    TS-EEEEEEEEE...TTSSSEEE.EEEEESS-CCT.CCCCHTTCHHCCHGGGHHHHHTT-EEEEEE-TTSTTS-S---TT.....TTTHHHHHHHH CS
  Peptidase_S15   1 DGvrLavdiyrP.etkskeklPv.lltrtPYgkndelasdkalaleelelqdkvfvarGYavVvqdvrGtggSeGeftvg.....dsdeaedgadv 89 
                    DG+r+ ++++   +t++++ +P+ ++ + +Y+         a+++++ ++++  +++rG ++ v+ vrG g+    +  +     +++  +d++++
     KIR64634.1 444 DGTRVPISLVCRaGTPRDGSAPCvIYGYGSYE---------ASMDPWFSVARLSLLDRGVVFAVAHVRGGGELGRRWYDQgkmlaKKNTFTDFVAC 530
                    55566665555555555566664133444444.........45555555556669**************7665444433334444*********** PP

                    HHHHHHC.TTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEEECE-S-TCC CS
  Peptidase_S15  90 idWlakq.pwsnGkVgmtGiSYlGttqllaaatgvpalkaivpeaaisdlyd 140
                     + l+k  + s ++  + G S +G +  ++a+ +++a + +v++++ +d  +
     KIR64634.1 531 ARHLVKSgWTSADRLVARGASAGGLLMGAVANLAPDAFAGVVAQVPFVDPLT 582
                    *******999*************************************99876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.25
                    -SSSHHHHTT-HHHHHCT--S-E.EEEEECCSSTTC.CHHHHHHHHHCCT CS
  Peptidase_S15 209 gdydafWkdrnlsedadkvkapv.llvgGwnDwnvk.ngaiklyealkap 256
                    ++  a+ k+ +++e++++v+ p+ l v ++nD+ v+ ++  k+  +l+a 
     KIR64634.1 606 PEVYAYMKSYAPYENVAAVDYPAiLAVTSLNDTRVLyHEPAKWIARLRAV 655
                    55667888889999999999986267999***999988888877777765 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.6e-06     0.008      49     153 ..     524     627 ..     521     646 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.6e-06
                    HHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEE.EESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHH CS
  Abhydrolase_3  49 vedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepkvagqv.liyPvtdlertesesikkaeeladgplltraaldlfwrl 143
                    + d +a +r+l+++ w   + ++r+v  G SaGG l+ ava  a d+   +v++qv  + P+t   +++ + + ++ e+  g  l   ++ ++++ 
     KIR64634.1 524 FTDFVACARHLVKSGW---TSADRLVARGASAGGLLMGAVANLAPDAF-AGVVAQVpFVDPLTSILDPSLPLTVTEWEE-WGNPLDDPEVYAYMKS 614
                    7899999999999988...6889***********************83.334444414445554444444555333333.3345677777788888 PP

                    HSS...GGGGGST CS
  Abhydrolase_3 144 ylp...eadrddp 153
                    y+p    a +d p
     KIR64634.1 615 YAPyenVAAVDYP 627
                    8874344444555 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.7   1.7e-05     0.039      10     126 ..     457     572 ..     448     577 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.7e-05
  Esterase_phd  10 Garr.gamplvvmlhGc.tqsveefaaGtrmnlladklGvvvlypeqslranaqkcwnwykdtdraGr.GeaavvvalvdalvdehrvdaarvyvaG 103
                   G++r g+ p v+  +G  + s++ + + +r+ ll +   ++v       r   +   +wy++ +   +    +  va ++ lv+     a r+   G
    KIR64634.1 457 GTPRdGSAPCVIYGYGSyEASMDPWFSVARLSLLDRGVVFAV----AHVRGGGELGRRWYDQGKMLAKkNTFTDFVACARHLVKSGWTSADRLVARG 549
                   555536778888888762456777888888888877655555....457888888999***87765550556789********************** PP

  Esterase_phd 104 lsaGaaladllalhypdvfaava 126
                    saG+ l   +a   pd fa v 
    KIR64634.1 550 ASAGGLLMGAVANLAPDAFAGVV 572
                   ********************985 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   5.4e-05      0.12      15      28 ..     147     160 ..     142     165 .. 0.86
   2 ?   -1.4   0.1       1.1   2.5e+03       9      25 ..     186     202 ..     185     204 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.4e-05
                 EE-TTSSEEEEEEE CS
        PD40  15 sfSPDGkrlaFsSd 28 
                  +SPDG++la+s d
  KIR64634.1 147 DVSPDGRWLAYSTD 160
                 58*********987 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
                 S.EEEEEE-TTSSEEEE CS
        PD40   9 gnegaPsfSPDGkrlaF 25 
                 g  ++ ++S D + l +
  KIR64634.1 186 GTFYGTAWSADASVLFY 202
                 5567899***9666666 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001      0.23      80     168 ..     510     599 ..     489     681 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
                 .TTEEETTCCCCCCHCHHHHTHHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CCHCHHHC...TTCCHHHCC CS
    Esterase  80 rfyenategpgaeayetfltqeLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWgq...eekeawqen 168
                 r y++++   ++  +++f+++    l+++   +a++  ++ G+S GGl    +a  +pd F+ v ++ p+v+p  ++ ++    + ++w+e+
  KIR64634.1 510 RWYDQGKMLAKKNTFTDFVACA-RHLVKSGWTSADR-LVARGASAGGLLMGAVANLAPDAFAGVVAQVPFVDPLTSILDPslpLTVTEWEEW 599
                 5555666666666666666664.4556666666666.8999*******87777888******************777776555333334433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4727.16
//
Query:       KIR64635.1  [L=452]
Description: FAD-linked oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-21   75.2   0.9    9.2e-21   74.0   0.9    1.7  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.9   5.1e-25   9.2e-21       3     137 ..      45     179 ..      43     181 .. 0.93

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 5.1e-25
                    EEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEE.STTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCG CS
  FAD_binding_4   3 avvrpeseeevaaalrlaneaglpvlvrGgGssll.gqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgip 97 
                     v+ p+ ++  a++lrla++++l+v++rG+G+++  g a a  +++ld+ rl +i +  +++g+++++aG++l ++++ l+++gl l l+  s   
     KIR64635.1  45 WVAVPGAPQAAAEVLRLAAAHDLTVVPRGAGTKIDwGVAPAHVDIMLDTGRLAGICHRPADGGVVEIGAGTPLRAAQATLERAGLRLALDAPSP-G 139
                    58899999***************************666658999**********999999****************************997776.4 PP

                    SBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEE CS
  FAD_binding_4  98 gtvGGaiatnagGygsekyGlirdnvlglevvladGevvr 137
                    +tvGG++a   +G+ ++++G  +++++g++ ++a Ge++ 
     KIR64635.1 140 ATVGGVLAADESGPLRHRHGGPCEQLVGVRYLDAAGELIS 179
                    5************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.20s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3386.54
//
Query:       KIR64636.1  [L=693]
Description: stage II sporulation protein E [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-36  126.6   0.5    2.3e-36  125.5   0.5    1.6  1  SpoIIE       Stage II sporulation protein E (SpoIIE)
    2.5e-10   40.4   0.1    5.1e-10   39.4   0.1    1.5  1  HATPase_c_2  Histidine kinase-like ATPase domain
    1.1e-08   35.5   0.9    1.1e-06   28.9   0.2    2.9  2  GAF_2        GAF domain
    5.7e-07   29.9   0.0    1.2e-05   25.6   0.1    2.6  2  GAF_3        GAF domain
    0.00025   21.7   0.4     0.0012   19.5   0.4    2.2  1  GAF          GAF domain


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5   0.5   6.5e-40   2.3e-36       1     191 [.     500     689 ..     500     691 .. 0.93

  Alignments for each domain:
  == domain 1  score: 125.5 bits;  conditional E-value: 6.5e-40
                 TTTEEEEEEEECSSSSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTT...EEEEEEESSSSEEEEETTSTEE CS
      SpoIIE   1 pdgrlalvvgDvvGhGleAalimgllrsalrelataglepaevlkrlnralardleeeerfaTavlavydpstg...kleyanaGhpppllvrpdggtk 96 
                 pdgr+++vvgDv+G+G+eAa+++gl+r ++r l+++g ++ e+l rln++l  + +   r++T+ la + p +g   ++++  aGh  p+l+r+ g+  
  KIR64636.1 500 PDGRWLVVVGDVSGKGVEAAAVTGLVRDVIRVLVSDGKPLPEALVRLNNTL-VERGGG-RYCTLALAAVGPGEGdqlDVSLHLAGHDRPVLLRA-GDGA 595
                 69*************************************************.666666.7********988887333589999***********.7777 PP

                 EEE--SS--TTTSSST-EEEEEEE--TTEEEEEESCCCCSSSHHHHHHCCCHHCHHHHCT.....HCCHHHHHHHHHHHHTTSSSSS-EEEEEEE CS
      SpoIIE  97 lllastglplGilpeadyetaelelepgdtlllyTDGvtEardsdgelfgkerllallasaegesleelldalveellelgsgeleDDitllvlr 191
                     ++g +lG+l+    + +el+l+pgd l++yTDGvtE+r  ++elfg erl + +a  +g s++ ++ +l++++  ++++ ++DDi++lvlr
  KIR64636.1 596 AFVGAGGTALGLLDAIASPAVELTLAPGDSLIFYTDGVTERR-RGRELFGTERLRESAAPLAGYSADVVAARLRSTAIGFSAETPRDDIAILVLR 689
                 7778999999********************************.************9999889999****************************99 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.1   1.4e-13   5.1e-10       2     112 ..      23     128 ..      22     143 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 1.4e-13
  HATPase_c_2   2 sadpehvrtvrevaeavlrraglseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpg.fdpetlpdpteeepkeslkeg 98 
                  +ad ++ +++r  +++vl++a+l+ +ll+e  l  +E+ tNaveha+ e       +++  d+  ltv+v+D ++g  d  t   ++ ++  ++  e+
   KIR64636.1  23 PADRRTPAAARALVRSVLAAARLD-DLLNEALLLTTELTTNAVEHARTELD-----IEVVGDDVGLTVTVSDFAAGsVDELTVGVRNDTSEINEVSER 114
                  67788888999******9999986.7999******************9765.....555588999*****************999999999******* PP

  HATPase_c_2  99 GrGlalikglvDev 112
                  GrGl+l+ +++   
   KIR64636.1 115 GRGLLLVDHFASRW 128
                  ********998765 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.015        52       4      51 ..     199     249 ..     196     263 .. 0.71
   2 !   28.9   0.2   3.2e-10   1.1e-06      75     138 .]     381     444 ..     317     444 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHHHS.S..EEEEEEE-TTS-..EEEEEEEES-TTSTT-S- CS
       GAF_2   4 leelldlvldelvel.gaalgyillvdddgg..lrlaawgeaeeefgaald 51 
                 l +++  +l +l+e+ gaa g + l+ +dg    +la +g++++  ++ l+
  KIR64636.1 199 LPDFATDLLTRLAEMvGAAGGLVRLDRGDGLgrQVLARYGRTPRAGNELLR 249
                 67889999******87*********88775433445566666666665554 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 3.2e-10
                 GG-S-HHHHHHHHHTT--EEEEEE-TTS---EEEEES......--HHHHHHHHHHHHHHHHHHH CS
       GAF_2  75 eedpdkkglpaghaglrsflavPlisegrvvGvlnlyankppafdeedlelLeelaeqiaiaie 138
                  ++++++g+     g+  + avPl+++g+ +G l+++++++++ d++++++Le +a+ +a+aie
  KIR64636.1 381 LREASRIGSQVPLGGPMEGFAVPLVARGQRLGTLAVGRHQRHRHDPDEVAVLEDVARRAALAIE 444
                 4456777777788888888*******9************************************8 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.12   4.2e+02       4      45 ..     201     242 ..     199     269 .. 0.84
   2 !   25.6   0.1   3.5e-09   1.2e-05      84     129 .]     400     445 ..     335     445 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.12
       GAF_3   4 ellekllkllvkllgaevgalllldedgnklqvaagwdgkpa 45 
                 +++ +ll +l++++ga  g + l ++dg   qv a ++  p+
  KIR64636.1 201 DFATDLLTRLAEMVGAAGGLVRLDRGDGLGRQVLARYGRTPR 242
                 678899*********************999999998855554 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 3.5e-09
       GAF_3  84 lavPLvagrqviGvlalastkprafdaedlelleslArqiataier 129
                  avPLva+ q +G+la+++++    d+++++ le++Ar++a+aie+
  KIR64636.1 400 FAVPLVARGQRLGTLAVGRHQRHRHDPDEVAVLEDVARRAALAIEN 445
                 89*****55**********99999*********************8 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.4   3.4e-07    0.0012      90     133 .]     399     443 ..     318     443 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.4e-07
                 EEEEEEEETTEEEEEEEEEESSS.CSHHHHHHHHHHHHHHHHHHH CS
         GAF  90 slvvPlvndgelwGllvlhnpsp.pftreelellqvladqvaval 133
                   +vPlv++g+ +G+l++ ++++ + +++e+++l+ +a+++a+a+
  KIR64636.1 399 GFAVPLVARGQRLGTLAVGRHQRhRHDPDEVAVLEDVARRAALAI 443
                 469*****************555478*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.38
# Mc/sec: 5426.91
//
Query:       KIR64637.1  [L=1455]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-71  236.5  33.7      2e-08   34.5   0.1   11.1  9  HAMP             HAMP domain
    2.7e-29  101.9   0.0    6.2e-29  100.8   0.0    1.7  1  HATPase_c        Histidine kinase-, DNA gyrase B-, and HSP90-
    7.6e-25   87.3   0.3    2.3e-24   85.7   0.1    2.0  1  Response_reg     Response regulator receiver domain
    2.4e-17   62.7   0.6    2.4e-17   62.7   0.6    4.2  3  HisKA            His Kinase A (phospho-acceptor) domain
      1e-16   61.5   0.6    3.5e-16   59.8   0.2    2.3  1  GAF_2            GAF domain
    1.3e-13   50.9   7.7    7.8e-06   25.2   0.0    5.7  4  APG17            Autophagy protein Apg17
    5.2e-12   46.0  43.7       0.11   12.5   0.5    8.6  8  Laminin_II       Laminin Domain II
    1.2e-11   44.7  59.4      0.039   14.2   1.3   11.6  9  DUF948           Bacterial protein of unknown function (DUF94
    2.6e-08   34.6   0.1    8.9e-08   32.8   0.1    2.0  1  GAF              GAF domain
    3.5e-08   33.4   0.3         26    5.0   0.0    7.7  7  SpoIIID          Stage III sporulation protein D
    6.2e-08   32.9   0.4         33    5.0   0.0    7.0  6  UPF0184          Uncharacterised protein family (UPF0184)
    1.4e-07   31.6  35.4       0.59   10.4   0.5   10.3  9  WXG100           Proteins of 100 residues with WXG
    2.1e-07   31.2  25.3        1.2    9.6   0.0    8.6  8  Syntaxin_2       Syntaxin-like protein
    3.7e-07   30.2  11.6          6    6.8   0.0    7.0  7  DUF1759          Protein of unknown function (DUF1759)
    5.6e-07   29.6   7.7         34    4.4   0.0    7.8  7  Focal_AT         Focal adhesion targeting region
    8.4e-07   29.4   8.4         12    6.4   0.0    7.1  7  PseudoU_synth_1  tRNA pseudouridine synthase
    0.00044   20.5  20.2          8    6.8   0.0    7.3  7  DUF5082          Domain of unknown function (DUF5082)
     0.0018   18.5  15.0        7.2    6.9   0.1    6.2  6  CclA_1           Putative cyclic bacteriocin
  ------ inclusion threshold ------
       0.08   12.7   5.0        1.2    9.0   5.0    3.2  1  DivIC            Septum formation initiator
       0.19   12.2  26.1        7.8    7.1   0.2    8.1  7  DUF1843          Domain of unknown function (DUF1843)
       0.29   11.4  12.2        1.1    9.4   7.5    3.5  2  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
       0.31   11.7   0.0       0.31   11.7   0.0    5.5  5  Anillin_N        Anillin N-terminus
       0.32   11.3  13.1       0.18   12.2   9.0    2.7  2  OmpH             Outer membrane protein (OmpH-like)
          2    8.7   6.7    1.4e+02    2.8   0.0    5.8  7  Gp-FAR-1         Nematode fatty acid retinoid binding protein
        2.1    7.4   9.7       0.96    8.5   6.3    2.1  2  Atg14            Vacuolar sorting 38 and autophagy-related su
        3.7    6.9  13.7         36    3.7   0.0    6.1  9  DUF3829          Protein of unknown function (DUF3829)


Domain annotation for each model (and alignments):
>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.4    0.0018       1.2      10      45 ..      21      55 ..      19      59 .. 0.76
   2 !   16.4   0.1   1.2e-05    0.0085       8      52 ..     110     159 ..     107     160 .. 0.95
   3 !   32.3   0.4   1.4e-10   9.4e-08       2      52 ..     201     251 ..     200     252 .. 0.95
   4 !   31.8   0.1     2e-10   1.4e-07       2      52 ..     293     343 ..     292     344 .. 0.96
   5 !   32.4   0.0   1.3e-10     9e-08       2      52 ..     385     435 ..     385     436 .. 0.96
   6 !   34.5   0.1   2.9e-11     2e-08       2      52 ..     477     527 ..     476     528 .. 0.96
   7 !   33.6   0.0   5.4e-11   3.7e-08       2      52 ..     569     619 ..     568     620 .. 0.95
   8 !   33.1   0.1     8e-11   5.5e-08       5      52 ..     664     711 ..     661     712 .. 0.94
   9 !   28.9   0.7   1.6e-09   1.1e-06       2      52 ..     753     803 ..     753     804 .. 0.96

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0018
                HHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHH CS
        HAMP 10 LrrLaraarriaaGdldtrlpvsgrDEiGeLarafN 45
                L +La+a rr++ Gdl++rl + +    Ge+a afN
  KIR64637.1 21 LGELAEALRRVRGGDLKVRLRP-RAGAAGEVADAFN 55
                789****************766.3333566666666 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHHHTTTBTSST....CCT.TSSSHHHHHHHHHHHHHHHHH CS
        HAMP   8 rPLrrLaraarriaaGdldtr....lpv.sgrDEiGeLarafNaMldrLr 52 
                 rP  ++ar++ ++a+Gdl+++    ++    r E  +++r++N+M+d+L 
  KIR64637.1 110 RPTTEIARVIVAVADGDLSQHmaleIDGrPLRGEYLRIGRTVNTMVDQLS 159
                 78889***********************99******************96 PP

  == domain 3  score: 32.3 bits;  conditional E-value: 1.4e-10
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 +a +++  +r ++++a ++a+Gdl++ ++v  r E++eLa ++N + d Lr
  KIR64637.1 201 MASNLTGQVRSISQVATAVARGDLSQKITVGARGEVAELADTMNSLTDTLR 251
                 57889999****************************************997 PP

  == domain 4  score: 31.8 bits;  conditional E-value: 2e-10
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 +a ++++ +r++a++  ++a+Gdl++ ++v  + Ei eL  ++N+M+d+L 
  KIR64637.1 293 MASNLTAQVRNIAQVSTAVARGDLSQKITVAAQGEILELKDTVNTMVDQLS 343
                 578999*******************************************96 PP

  == domain 5  score: 32.4 bits;  conditional E-value: 1.3e-10
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 la++++  +r+++++  ++a+Gdl++ ++v+ + Ei eL  ++N+M+d+L 
  KIR64637.1 385 LAGNLTSQVRNISQVSTAVAKGDLSQKITVDAQGEILELKNTVNTMVDQLS 435
                 6889999******************************************96 PP

  == domain 6  score: 34.5 bits;  conditional E-value: 2.9e-11
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 +a ++++ +r++a+++ ++a+Gdl++ ++v+ r Ei eL  ++N+M+d+L 
  KIR64637.1 477 MASNLTAQVRNIASVTTAVAKGDLSQKITVDARGEILELKSTVNTMVDQLS 527
                 578999*******************************************96 PP

  == domain 7  score: 33.6 bits;  conditional E-value: 5.4e-11
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 +a +++  +r++a+++ ++a+Gdl++ ++v+ r Ei eL  ++N+M+d+L 
  KIR64637.1 569 MASNLTSQVRNIASVTTAVAKGDLSQKITVDARGEILELKSTVNTMVDQLS 619
                 57889999*****************************************96 PP

  == domain 8  score: 33.1 bits;  conditional E-value: 8e-11
                 TTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   5 rilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 +++  +r++a+++ ++a+Gdl++ ++v+ + Ei eL  ++N+M+d+Lr
  KIR64637.1 664 NLTSQVRNIASVTTAVAKGDLSQKITVDAQGEILELKNTVNTMVDQLR 711
                 678899*****************************************8 PP

  == domain 9  score: 28.9 bits;  conditional E-value: 1.6e-09
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 la +++  Lr +a++  ++ +Gdl++r+ v+ + E+++L  ++N+M+  Lr
  KIR64637.1 753 LASTLTTQLRAIAEVSTSVTRGDLTQRIAVEAQGEVADLKDNINQMIVTLR 803
                 68899******************************************9998 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0     9e-32   6.2e-29       1     110 [.    1159    1282 ..    1159    1284 .. 0.90

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 9e-32
                  EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE.........EE.....TEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHH CS
   HATPase_c    1 gdekrLrqiisnlvdNavkfatkageieveika.........se.....ddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivk 82  
                  +d +rL+qi++nl++Navkf t++g ++++i +         +      + + ++v D+GiGi+ ++l ++fe+f+q d++t+r++ggtGlGlsi++
  KIR64637.1 1159 TDAQRLQQILRNLLSNAVKF-TDNGAVTLRIAPapenvvfdvPAltnarQVIAFTVIDTGIGISDDKLSLIFEAFQQaDGTTSRRYGGTGLGLSISR 1254
                  5899****************.999999999998766655554115555679999******************************************* PP

                  HHHHHTTTEEEEEEETTTEEEEEEEEES CS
   HATPase_c   83 klvelmgGeiwvesepgrGttftftlpl 110 
                   l++l+gG+i+v+s pg+G+tft+++p+
  KIR64637.1 1255 DLARLLGGSITVSSAPGEGSTFTLYVPE 1282
                  ************************9996 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.1   3.4e-27   2.3e-24       1     110 [.    1330    1441 ..    1330    1443 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 3.4e-27
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH.ESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHC CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek.vdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealka 92  
                    vli+dDd  ++ +l+++le +g+ +v   ++g++ ++ll e+  vd++l+D +mp+ dG+e++++ir+++   +lp+++lta++   d++ al a
    KIR64637.1 1330 VLIIDDDVRNVFALTSALELHGM-TVLYSDNGADGVRLLAEHPeVDIVLMDAMMPDQDGYETTRQIRRNHhfADLPIVFLTAKAMPGDRESALAA 1423
                    8**********************.***************99988**********************8888799********************** PP

                    TESEEEESSG-HHHHHHH CS
  Response_reg   93 gaddflsKpfdpeeLlka 110 
                    g +d+++Kp+d +eL++ 
    KIR64637.1 1424 GGSDYITKPVDLDELIEL 1441
                    ***************985 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.5       9.4   6.5e+03      23      40 ..    1000    1016 ..     972    1030 .. 0.55
   2 !   62.7   0.6   3.4e-20   2.4e-17       2      67 .]    1045    1112 ..    1044    1112 .. 0.94
   3 ?    0.2   0.0       1.2   8.1e+02      44      59 ..    1157    1172 ..    1149    1175 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 9.4
                  HHHHHHC..T-HSSCHHH CS
       HisKA   23 naeaLkregklteelkey 40  
                  nae+ +++++l  e+k++
  KIR64637.1 1000 NAEL-EDKAQLLSEQKAN 1016
                  2222.2223444445555 PP

  == domain 2  score: 62.7 bits;  conditional E-value: 3.4e-20
                  HHHHHHHHHHHHHHHHHHHHHHHHHH.HC....T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA    2 lgrflagvaHELrtPLsailgnaeaL.kre..gklteelkeyletiesearrldhlvedlLdlsrieag 67  
                  +++fla+++HELrtPL+++l+ a +L +    ++lt+++ e+ +ti+ ++  l++l++d+Ldls+ieag
  KIR64637.1 1045 KSEFLANMSHELRTPLNSLLLLARLLvE-NseQNLTPKQIEFARTIHGSGSDLLRLIDDILDLSKIEAG 1112
                  79************************53.44789*********************************97 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.2
                  HHHHHHHHHHHHHHHH CS
       HisKA   44 iesearrldhlvedlL 59  
                  ++  a+rl++++ +lL
  KIR64637.1 1157 LVTDAQRLQQILRNLL 1172
                  56789********997 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.2   5.1e-19   3.5e-16       1     137 [.     829     966 ..     829     967 .. 0.90

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 5.1e-19
                 HHHHHHHHHHHHHHHHHS.S..EEEEEEE-.TTS-EEEE...EEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT--EE CS
       GAF_2   1 aadleelldlvldelvel.gaalgyillvd.ddgglrla...awgeaeeefgaaldrplgeglvgealrtgrpvilndleedpdkkglpaghaglrsfl 94 
                 ++dl e+ + ++ e++ l +a+lg + l d  dg++rl+   ++g+  ++++  +   +geglvg+a+ ++r + ++ +++ +   ++ ++  +++  +
  KIR64637.1 829 QRDLGEVCRMIMMEVTPLvDAQLGAFFLADtSDGSMRLRltaSYGYVARGHDVTF--GPGEGLVGQAALSRRTIRVSASPDGRLTLRSGLANTPPADLV 925
                 589**************889**997777663666666666678999999999999..************************9***************** PP

                 EEEE-TTS---EEEEES......--HHHHHHHHHHHHHHHHHH CS
       GAF_2  95 avPlisegrvvGvlnlyankppafdeedlelLeelaeqiaiai 137
                 ++P++ eg+++Gv+++  ++  af + +l++Le l  +i++a+
  KIR64637.1 926 VLPVLFEGELLGVIEF--AGVAAFPDLHLTFLERLVLTIGVAV 966
                 ***************8..79999*****************997 PP

>> APG17  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.1e-08   7.8e-06      28     282 ..     185     488 ..     181     497 .. 0.77
   2 !    7.9   0.0    0.0021       1.4     131     196 ..     500     578 ..     472     588 .. 0.78
   3 !    9.6   0.1   0.00066      0.45     129     291 ..     601     773 ..     579     807 .. 0.64
   4 ?    2.2   4.8      0.12        80      21     276 ..     976    1025 ..     964    1065 .. 0.42

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.1e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHIIIIIIIII..IIIIIIIIHHHHHHHHHHHHHHHHHHHHHTSS-TTS...................... CS
       APG17  28 rqeleeavkllakteflrdglkqQlkllekirkslerkl..ekgkeefkdlikeldaanerLektlekLrktkvepsfrpegee............... 109
                 r    ++++l + ++ + ++l  Q++ +++++  + r    +k+   ++  ++el +  ++L++tl    + +v  + r+ g+e               
  KIR64637.1 185 RGVAGTWKDLTDSVNTMASNLTGQVRSISQVATAVARGDlsQKITVGARGEVAELADTMNSLTDTLRLFAE-QVTRVAREVGTEgklggqadvpnvagt 282
                 66677899999***********************9998889*************************86666.566666888878889999999999988 PP

                 .STGGGCS--TTTTHHHHHHHHH.......................HHHHHHHHHHHHTTHH..HHHHHHHHHHH..-------STCCHHHHHHHHHHH CS
       APG17 110 .ktLlDFvdedsveelkealkes.......................idelqaaqkkldssllefdtdlrelkkel..sksksksessslipellkeles 182
                  k L D v   + ++l  +++++                       i el+++ + + ++l++f ++++ + +e+  + +  ++++   ++   ++l++
  KIR64637.1 283 wKDLTDSVNSMA-SNLTAQVRNIaqvstavargdlsqkitvaaqgeILELKDTVNTMVDQLSSFADEVTRVAREVgsEGKLGGQAQVRGVSGTWRDLTE 380
                 888888775433.344444444477788899999999999999999*****************************852223345999************ PP

                 HHHHHHHHHHHHHHHHHHHHHH......................S-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.....HHHHHHHHHHHHHHHH CS
       APG17 183 leeemAslLesLtnHfDqcvkAvkltegggalrraaae......lseeereelleVlekDaaeledVvkelqerleem.....ekakkllsekkeeiek 270
                   +++A  L+s ++   q+++Av   + +++    +++        ++  + +++ l+  a e+  V +e+ ++ +         +  ++++ ++++++
  KIR64637.1 381 NVNQLAGNLTSQVRNISQVSTAVAKGDLSQKI---TVDaqgeilELKNTVNTMVDQLSSFADEVTRVAREVGTEGKLGgqaqvRGVAGTWRDLTDNVNS 476
                 **********************8865555544...4444445763344467899999999999999999988877666553333334444444444444 PP

                 HHHHHHHHHHHH CS
       APG17 271 llsalkkaleel 282
                 + s+l+++++++
  KIR64637.1 477 MASNLTAQVRNI 488
                 444444444444 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0021
                 H...........HHHHHHHHHHHHTTHH..HHHHHHHHHHH...-------STCCHHHHHHHHHHHHHHHHHHHHHHHHH CS
       APG17 131 s...........idelqaaqkkldssllefdtdlrelkkel...sksksksessslipellkelesleeemAslLesLtn 196
                 +           i el+++ + + ++l++f ++++ + +e+     +  ++++ + +    ++l++  + mAs L+s ++
  KIR64637.1 500 LsqkitvdargeILELKSTVNTMVDQLSSFADEVTRVAREVgteG-KLGGQAQVKGVLGTWRDLTDNVNSMASNLTSQVR 578
                 04444444555599***************************8641.334458999999999****************886 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00066
                 HHHHHHHHHHHHHHHTTHH..HHHHHHHHHHH..-------STCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..................... CS
       APG17 129 kesidelqaaqkkldssllefdtdlrelkkel..sksksksessslipellkelesleeemAslLesLtnHfDqcvkAvkltegggalrraaae..... 220
                 + +i el+++ + + ++l++f ++++ + +e+  + +  ++++ + ++   ++l++  + m s L+s ++    +++Av   + +   ++++++     
  KIR64637.1 601 RGEILELKSTVNTMVDQLSSFADEVTRVAREVgtEGKLGGQAQVKGVSGTWRDLTDNVNSMGSNLTSQVRNIASVTTAVAKGDLS---QKITVDaqgei 696
                 5669999999999*******************86323345599999999********************9999999997754444...44444433335 PP

                 .S-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.....HHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHH CS
       APG17 221 .lseeereelleVlekDaaeledVvkelqerleem.....ekakkllsekkeeiekllsalkkaleeleevgkklpe 291
                    ++  + +++ l   a e+  V +e+  + +       + ++ ++++ +e++++l s+l+ +l+ + ev++ + +
  KIR64637.1 697 lELKNTVNTMVDQLRSFADEVTRVGREVGIEGKLGaqaqvKGVSGTWRDLTENVNQLASTLTTQLRAIAEVSTSVTR 773
                 42233345666666666666666666654444333433445555555555566666666666666666655444433 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.12
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHIIIIIIIIIIIIIIIIIHHHHHHHHHHHHHHHHHHHHHTSS-TTS.......STGGGCS- CS
       APG17   21 nelltsarqeleeavkllakteflrdglkqQlkllekirkslerklekgkeefkdlikeldaanerLektlekLrktkvepsfrpegeektLlDFvd 117 
                  +ell++++ + +e ++++a+++     l++  +ll++ + ++e++                                                    
  KIR64637.1  976 EELLAQSQRLAHELQEQSAELQRTNAELEDKAQLLSEQKANIETQN--------------------------------------------------- 1021
                  3333333333333333333333333333333333333333333332................................................... PP

                  -TTTTHHHHHHHHHHHHHHHHHHHHHTTHH..HHHHHHHHHHH-------STCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......... CS
       APG17  118 edsveelkealkesidelqaaqkkldssllefdtdlrelkkelsksksksessslipellkelesleeemAslLesLtnHfDqcvkAvkltegggal 214 
                                                                                                                   
  KIR64637.1    - -------------------------------------------------------------------------------------------------    -
                  ................................................................................................. PP

                  ......S-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       APG17  215 rraaaelseeereelleVlekDaaeledVvkelqerleemekakkllsekkeeiekllsalk 276 
                                                                            +++ 
  KIR64637.1 1022 ----------------------------------------------------------REIE 1025
                  ..........................................................2222 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.027        18      10      80 ..     189     255 ..     181     266 .. 0.76
   2 ?    5.1   0.3     0.031        21      15      78 ..     286     345 ..     274     358 .. 0.65
   3 !    9.4   0.5    0.0014      0.98      12      78 ..     375     437 ..     365     449 .. 0.71
   4 !   10.3   0.3   0.00078      0.54      20      78 ..     468     529 ..     457     541 .. 0.69
   5 !   12.5   0.5   0.00016      0.11      12      78 ..     552     621 ..     549     633 .. 0.78
   6 !   10.5   0.2   0.00067      0.46      14      78 ..     646     713 ..     641     725 .. 0.73
   7 !   12.2   0.2    0.0002      0.14       9     104 ..     733     831 ..     731     838 .. 0.85
   8 ?    4.9   4.3     0.035        24       7      60 ..     970    1023 ..     966    1057 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.027
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHH CS
  Laminin_II  10 etakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkq 80 
                  t k   + ++ ++ nl     ++s++++ v++     + ++k+++ Ar +v +L  +++ L d l+   +
  KIR64637.1 189 GTWKDLTDSVNTMASNLTGQVRSISQVATAVAR----GDLSQKITVGARGEVAELADTMNSLTDTLRLFAE 255
                 555666777888888888888888888888433....336778999*****************99986655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.031
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXX--TTTTTGGGHHHH CS
  Laminin_II  15 vleqlaplsqnlentkeklseinrsveetnekvk...dankairdArrsvkkLeklapqLldklkel 78 
                   + ++ ++ nl     ++ ++ +        v     ++k+++ A+ ++ +L+ +++ ++d+l++ 
  KIR64637.1 286 LTDSVNSMASNLTAQVRNIAQVSTA-------VArgdLSQKITVAAQGEILELKDTVNTMVDQLSSF 345
                 3344444444444444444444444.......222325678889999****************9976 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0014
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHH CS
  Laminin_II  12 akevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkel 78 
                      e +++l+ nl     ++s++ + v+    k + ++k+++dA+ ++ +L+++++ ++d+l++ 
  KIR64637.1 375 WRDLTENVNQLAGNLTSQVRNISQVSTAVA----KGDLSQKITVDAQGEILELKNTVNTMVDQLSSF 437
                 444555666666666666666666666632....234678999*********************976 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00078
                 XXXXXXXXXXXXXXXXXXXXXXX.XXXXXX..XXXXXXXXXXXXXXXX--TTTTTGGGHHHH CS
  Laminin_II  20 aplsqnlentkeklseinrsvee.tnekvk..dankairdArrsvkkLeklapqLldklkel 78 
                  +l  n++ + ++l    r+++  t++++k   ++k+++dAr ++ +L+ +++ ++d+l++ 
  KIR64637.1 468 RDLTDNVNSMASNLTAQVRNIASvTTAVAKgdLSQKITVDARGEILELKSTVNTMVDQLSSF 529
                 45555555555555544444433044444464677899*********************976 PP

  == domain 5  score: 12.5 bits;  conditional E-value: 0.00016
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXX--TTTTTGGGHHHH CS
  Laminin_II  12 akevleqlaplsqnlentkeklseinrsveetnekvk...dankairdArrsvkkLeklapqLldklkel 78 
                 +k vl    +l  n++ + ++l +  r+++ ++  v     ++k+++dAr ++ +L+ +++ ++d+l++ 
  KIR64637.1 552 VKGVLGTWRDLTDNVNSMASNLTSQVRNIASVTTAVAkgdLSQKITVDARGEILELKSTVNTMVDQLSSF 621
                 6778888899999999999998766666655554444385577899*********************976 PP

  == domain 6  score: 10.5 bits;  conditional E-value: 0.00067
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX..XXXXXXXXXXXXXXXX--TTTTTGGGHHHH CS
  Laminin_II  14 evleqlaplsqnlentkeklseinrsvee.tnekvk..dankairdArrsvkkLeklapqLldklkel 78 
                  v     +l  n++ + ++l +  r+++  t++++k   ++k+++dA+ ++ +L+++++ ++d+l++ 
  KIR64637.1 646 GVSGTWRDLTDNVNSMGSNLTSQVRNIASvTTAVAKgdLSQKITVDAQGEILELKNTVNTMVDQLRSF 713
                 55666677888888888887665555555045555574577899*********************986 PP

  == domain 7  score: 12.2 bits;  conditional E-value: 0.0002
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXX.XXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHHHHHHHHHHH CS
  Laminin_II   9 netakevleqlaplsqnlentkeklseinrsveetnekvk..dankai.rdArrsvkkLeklapqLldklkelkqleeassslsdniseikelIaqARk 104
                 + ++k v     +l +n++++ + l +  r ++e+   v   d+++ i ++A+ +v +L+ +++q++  l+e  +++ +++ l  n+ +i  l +  R+
  KIR64637.1 733 QAQVKGVSGTWRDLTENVNQLASTLTTQLRAIAEVSTSVTrgDLTQRIaVEAQGEVADLKDNINQMIVTLRETTKKNAEQGWLDSNLARIGGLLQGQRD 831
                 556777888888999999999999999999999999998888777665279**********************999999777********999888887 PP

  == domain 8  score: 4.9 bits;  conditional E-value: 0.035
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II    7 eanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrs 60  
                  +an  ++e l+q + l+ +l++ +++l++ n+++e   +++++ +  i+  +r+
  KIR64637.1  970 QANRRTEELLAQSQRLAHELQEQSAELQRTNAELEDKAQLLSEQKANIETQNRE 1023
                  699999*************************99887777777555444443333 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.5    0.0035       2.4      25      78 ..     159     220 ..     144     230 .. 0.75
   2 ?    6.7   1.7     0.012       8.6      29      85 ..     237     312 ..     227     321 .. 0.64
   3 !   12.5   0.6    0.0002      0.14      23      79 ..     341     405 ..     319     414 .. 0.86
   4 !   11.5   1.9   0.00039      0.27      23      79 ..     433     497 ..     411     506 .. 0.85
   5 !   14.2   1.3   5.7e-05     0.039      23      79 ..     525     589 ..     503     598 .. 0.86
   6 !   12.4   0.9   0.00021      0.15      23      79 ..     617     681 ..     595     689 .. 0.86
   7 !    9.1   1.2    0.0022       1.5      26      77 ..     705     771 ..     689     781 .. 0.74
   8 ?   -0.4   0.1         2   1.4e+03      28      58 ..     781     811 ..     774     838 .. 0.59
   9 ?    2.4   1.0      0.27   1.9e+02      12      64 ..     959    1011 ..     957    1025 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0035
      DUF948  25 kktldeaaatieele........kqvdpilkevedllakvnelledvneklekvdplteava 78 
                 ++  +e+++  +e++         +v+++    +dl++ vn++++++++++ ++ ++ +ava
  KIR64637.1 159 SSFSNEVTRVAREVGtegklggqADVRGVAGTWKDLTDSVNTMASNLTGQVRSISQVATAVA 220
                 333344444444444888888889999999999*************************9997 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.012
      DUF948  29 deaaatieelekqvdpilkevedllakvne...................lledvneklekvdplteavadlgesvs 85 
                  e+a+t+++l++ ++   ++v+++ ++v +                   l++ vn+   ++ + + ++a+++++v+
  KIR64637.1 237 AELADTMNSLTDTLRLFAEQVTRVAREVGTegklggqadvpnvagtwkdLTDSVNSMASNLTAQVRNIAQVSTAVA 312
                 5555566666655555555555555555555555555556666666666777777777777777777777777764 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 0.0002
      DUF948  23 klkktldeaaatieele........kqvdpilkevedllakvnelledvneklekvdplteavad 79 
                 +l++ +de+++  +e++         qv++++   +dl+++vn+l+ ++++++ ++ ++ +ava+
  KIR64637.1 341 QLSSFADEVTRVAREVGsegklggqAQVRGVSGTWRDLTENVNQLAGNLTSQVRNISQVSTAVAK 405
                 56667777777777777999999999***********************************9985 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00039
      DUF948  23 klkktldeaaatieele........kqvdpilkevedllakvnelledvneklekvdplteavad 79 
                 +l++ +de+++  +e++         qv+++    +dl+++vn ++++++ ++ ++ ++t+ava+
  KIR64637.1 433 QLSSFADEVTRVAREVGtegklggqAQVRGVAGTWRDLTDNVNSMASNLTAQVRNIASVTTAVAK 497
                 55666677777777777999999999************************************985 PP

  == domain 5  score: 14.2 bits;  conditional E-value: 5.7e-05
      DUF948  23 klkktldeaaatieele........kqvdpilkevedllakvnelledvneklekvdplteavad 79 
                 +l++ +de+++  +e++         qv+++l   +dl+++vn +++++++++ ++ ++t+ava+
  KIR64637.1 525 QLSSFADEVTRVAREVGtegklggqAQVKGVLGTWRDLTDNVNSMASNLTSQVRNIASVTTAVAK 589
                 5666777777777777799999999**************************************85 PP

  == domain 6  score: 12.4 bits;  conditional E-value: 0.00021
      DUF948  23 klkktldeaaatieele........kqvdpilkevedllakvnelledvneklekvdplteavad 79 
                 +l++ +de+++  +e++         qv++++   +dl+++vn + +++++++ ++ ++t+ava+
  KIR64637.1 617 QLSSFADEVTRVAREVGtegklggqAQVKGVSGTWRDLTDNVNSMGSNLTSQVRNIASVTTAVAK 681
                 5666777777777777799999999**************************************85 PP

  == domain 7  score: 9.1 bits;  conditional E-value: 0.0022
      DUF948  26 ktldeaaatieele...............kqvdpilkevedllakvnelledvneklekvdplteav 77 
                  ++d+++++ +e++                qv++++   +dl+++vn+l++ ++ +l ++ ++ ++v
  KIR64637.1 705 TMVDQLRSFADEVTrvgrevgiegklgaqAQVKGVSGTWRDLTENVNQLASTLTTQLRAIAEVSTSV 771
                 4445555555555555555558888888889999999999999999998888888888888887776 PP

  == domain 8  score: -0.4 bits;  conditional E-value: 2
      DUF948  28 ldeaaatieelekqvdpilkevedllakvne 58 
                 + ea+  +++l++++++++  ++++++k  e
  KIR64637.1 781 AVEAQGEVADLKDNINQMIVTLRETTKKNAE 811
                 4456666666666666666666666655444 PP

  == domain 9  score: 2.4 bits;  conditional E-value: 0.27
      DUF948   12 vLviflivvllklkktldeaaatieelekqvdpilkevedllakvnelledvn 64  
                  vL+i ++v  +++++  +e+ a+ + l +++++ + e++++ a+ ++ ++ ++
  KIR64637.1  959 VLTIGVAVNTIQANRRTEELLAQSQRLAHELQEQSAELQRTNAELEDKAQLLS 1011
                  55555666666666666666666666666666666666666555555444444 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   1.3e-10   8.9e-08       1     133 []     831     966 ..     831     966 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 1.3e-10
                 SHHHHHHHHHHHHHHHHTESEEEEEE.EEETTEEECEEEEECC........EEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEE CS
         GAF   1 dleelldtvveelrellgadrvalyl.pdydGlhydipqasrw........lfmkngrgicgqvlatgqplvipdstpdprfaqynrrdllenmgirss 90 
                 dl e+++ ++ e+ +l++a+ +a++l +++dG+   +   +++        +   +g+g++gq++ ++++++++ ++pd+r      r+ l+n+ +  +
  KIR64637.1 831 DLGEVCRMIMMEVTPLVDAQLGAFFLaDTSDGSMR-LRLTASYgyvarghdVTFGPGEGLVGQAALSRRTIRVS-ASPDGRLTL---RSGLANTPPADL 924
                 7899*********************9755666422.222222223444334455558999**************.679999666...789999****** PP

                 EEEEEEETTEEEEEEEEEESSSCSHHHHHHHHHHHHHHHHHHH CS
         GAF  91 lvvPlvndgelwGllvlhnpsppftreelellqvladqvaval 133
                 +v+P++ +gel+G++ +    + f +  l +l+ l   ++va+
  KIR64637.1 925 VVLPVLFEGELLGVIEFAGVAA-FPDLHLTFLERLVLTIGVAV 966
                 *******************888.****************9996 PP

>> SpoIIID  Stage III sporulation protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.79   5.5e+02      37      61 ..     191     215 ..     182     222 .. 0.87
   2 ?    3.0   0.0      0.16   1.1e+02      37      62 ..     283     308 ..     279     319 .. 0.89
   3 ?    5.0   0.0     0.037        26      28      61 ..     368     399 ..     356     404 .. 0.83
   4 ?    2.2   0.0      0.29     2e+02      37      61 ..     467     491 ..     456     497 .. 0.86
   5 ?    1.8   0.0      0.38   2.6e+02      38      60 ..     560     582 ..     551     588 .. 0.89
   6 ?    3.5   0.0      0.11        79      28      60 ..     644     674 ..     625     680 .. 0.84
   7 ?    4.7   0.0     0.048        33      27      62 ..     735     768 ..     729     780 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.79
     SpoIIID  37 hkDvterLkkinkklakqvkevLek 61 
                  kD+t+ ++++ ++l  qv+++ ++
  KIR64637.1 191 WKDLTDSVNTMASNLTGQVRSISQV 215
                 69******************99665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.16
     SpoIIID  37 hkDvterLkkinkklakqvkevLekn 62 
                  kD+t+ ++++ ++l +qv+++ ++ 
  KIR64637.1 283 WKDLTDSVNSMASNLTAQVRNIAQVS 308
                 59*******************98765 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.037
     SpoIIID  28 vfgvskstvhkDvterLkkinkklakqvkevLek 61 
                 v gvs     +D+te ++++  +l +qv+++ ++
  KIR64637.1 368 VRGVS--GTWRDLTENVNQLAGNLTSQVRNISQV 399
                 55554..5689*******************9765 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.29
     SpoIIID  37 hkDvterLkkinkklakqvkevLek 61 
                  +D+t+ ++++ ++l +qv+++ ++
  KIR64637.1 467 WRDLTDNVNSMASNLTAQVRNIASV 491
                 69*******************9765 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.38
     SpoIIID  38 kDvterLkkinkklakqvkevLe 60 
                 +D+t+ ++++ ++l +qv+++ +
  KIR64637.1 560 RDLTDNVNSMASNLTSQVRNIAS 582
                 8*******************976 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.11
     SpoIIID  28 vfgvskstvhkDvterLkkinkklakqvkevLe 60 
                 v gvs     +D+t+ ++++ ++l +qv+++ +
  KIR64637.1 644 VKGVS--GTWRDLTDNVNSMGSNLTSQVRNIAS 674
                 55554..5689*******************976 PP

  == domain 7  score: 4.7 bits;  conditional E-value: 0.048
     SpoIIID  27 kvfgvskstvhkDvterLkkinkklakqvkevLekn 62 
                 +v gvs     +D+te ++++ ++l +q++++ e+ 
  KIR64637.1 735 QVKGVS--GTWRDLTENVNQLASTLTTQLRAIAEVS 768
                 555554..5689*******************98875 PP

>> UPF0184  Uncharacterised protein family (UPF0184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       1.4   9.7e+02      30      44 ..     150     164 ..     147     171 .. 0.85
   2 ?    4.8   0.0     0.054        37      29      46 ..     333     350 ..     322     359 .. 0.84
   3 ?    5.0   0.0     0.047        33      28      46 ..     424     442 ..     408     450 .. 0.81
   4 ?    4.2   0.0     0.081        56      29      46 ..     517     534 ..     504     542 .. 0.86
   5 ?    4.2   0.0     0.081        56      29      46 ..     609     626 ..     596     634 .. 0.86
   6 ?    3.2   0.0      0.17   1.2e+02      28      46 ..     700     718 ..     685     730 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.4
     UPF0184  30 ainsmLDqinsaLDa 44 
                  +n m+Dq++s  ++
  KIR64637.1 150 TVNTMVDQLSSFSNE 164
                 69********98665 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.054
     UPF0184  29 eainsmLDqinsaLDalE 46 
                 + +n m+Dq++s  D++ 
  KIR64637.1 333 DTVNTMVDQLSSFADEVT 350
                 579************985 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.047
     UPF0184  28 yeainsmLDqinsaLDalE 46 
                  + +n m+Dq++s  D++ 
  KIR64637.1 424 KNTVNTMVDQLSSFADEVT 442
                 568*************985 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.081
     UPF0184  29 eainsmLDqinsaLDalE 46 
                   +n m+Dq++s  D++ 
  KIR64637.1 517 STVNTMVDQLSSFADEVT 534
                 579************985 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.081
     UPF0184  29 eainsmLDqinsaLDalE 46 
                   +n m+Dq++s  D++ 
  KIR64637.1 609 STVNTMVDQLSSFADEVT 626
                 579************985 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.17
     UPF0184  28 yeainsmLDqinsaLDalE 46 
                  + +n m+Dq+ s  D++ 
  KIR64637.1 700 KNTVNTMVDQLRSFADEVT 718
                 468*************985 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.23   1.6e+02      52      80 ..     143     171 ..     140     174 .. 0.89
   2 ?    1.8   0.2      0.42   2.9e+02      15      78 ..     197     261 ..     182     265 .. 0.67
   3 !   10.4   0.5   0.00085      0.59      14      80 ..     288     355 ..     282     358 .. 0.93
   4 !    9.0   0.1    0.0023       1.6      11      80 ..     377     447 ..     368     450 .. 0.93
   5 !    7.8   0.1    0.0056       3.8      10      80 ..     468     539 ..     459     542 .. 0.92
   6 !    7.9   0.1    0.0051       3.6      11      80 ..     561     631 ..     556     634 .. 0.93
   7 ?    5.9   0.1     0.022        15      11      79 ..     653     722 ..     643     724 .. 0.90
   8 ?    0.7   0.3      0.88   6.1e+02      12      71 ..     746     806 ..     735     813 .. 0.71
   9 ?    1.6   1.7      0.47   3.3e+02      61      83 ..     983    1005 ..     972    1025 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  52 efeewkqaaqklvdaLeeisealkqaana 80 
                 e+ ++ ++++++vd+L++ s++++++a++
  KIR64637.1 143 EYLRIGRTVNTMVDQLSSFSNEVTRVARE 171
                 6788999*****************99975 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.42
                 HHHHHHHHHHHHHHHHHHHHHHC.GCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  15 rfqkqaeeledelqrlkaevdal.qsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaa 78 
                 ++++ a++l+++++++ +   a+ +++ s +  +  ++e +e+  +++ l d L   +e+++++a
  KIR64637.1 197 SVNTMASNLTGQVRSISQVATAVaRGDLSQKITVGARGEVAELADTMNSLTDTLRLFAEQVTRVA 261
                 45566666677777777777666666666666677777777777777777777777777776666 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00085
                 HHHHHHHHHHHHHHHHHHHHHHHC.GCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  14 arfqkqaeeledelqrlkaevdal.qsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaana 80 
                  ++++ a++l+++++++++   a+ +++ s +  +a q+e+ e+k +++++vd+L++ +++++++a++
  KIR64637.1 288 DSVNSMASNLTAQVRNIAQVSTAVaRGDLSQKITVAAQGEILELKDTVNTMVDQLSSFADEVTRVARE 355
                 5688999********************************************************99976 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC.GCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  11 qaaarfqkqaeeledelqrlkaevdal.qsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaana 80 
                 +   ++++ a++l+++++++ +   a+ +++ s +  +  q+e+ e+k++++++vd+L++ +++++++a++
  KIR64637.1 377 DLTENVNQLAGNLTSQVRNISQVSTAVaKGDLSQKITVDAQGEILELKNTVNTMVDQLSSFADEVTRVARE 447
                 566789999******************9**************************************99975 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.0056
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC.GCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  10 rqaaarfqkqaeeledelqrlkaevdal.qsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaana 80 
                 r+   ++++ a++l+++++++++   a+ +++ s +  +  ++e+ e+k +++++vd+L++ +++++++a++
  KIR64637.1 468 RDLTDNVNSMASNLTAQVRNIASVTTAVaKGDLSQKITVDARGEILELKSTVNTMVDQLSSFADEVTRVARE 539
                 5667899999******************9**************************************99975 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.0051
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC.GCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  11 qaaarfqkqaeeledelqrlkaevdal.qsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaana 80 
                 +   ++++ a++l+++++++++   a+ +++ s +  +  ++e+ e+k +++++vd+L++ +++++++a++
  KIR64637.1 561 DLTDNVNSMASNLTSQVRNIASVTTAVaKGDLSQKITVDARGEILELKSTVNTMVDQLSSFADEVTRVARE 631
                 566789999******************9**************************************99975 PP

  == domain 7  score: 5.9 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC.GCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  11 qaaarfqkqaeeledelqrlkaevdal.qsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaan 79 
                 +   ++++  ++l+++++++++   a+ +++ s +  +  q+e+ e+k++++++vd+L + +++++++++
  KIR64637.1 653 DLTDNVNSMGSNLTSQVRNIASVTTAVaKGDLSQKITVDAQGEILELKNTVNTMVDQLRSFADEVTRVGR 722
                 6667888899999999******99999999***999****************************999875 PP

  == domain 8  score: 0.7 bits;  conditional E-value: 0.88
                 HHHHHHHHHHHHHHHHHHHHHHHHHC.GCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  12 aaarfqkqaeeledelqrlkaevdal.qsgWsGaaadafqaefeewkqaaqklvdaLeeis 71 
                    ++++ a++l+++l++++    ++ +++     a++ q+e + +k ++++++  L e++
  KIR64637.1 746 LTENVNQLASTLTTQLRAIAEVSTSVtRGDLTQRIAVEAQGEVADLKDNINQMIVTLRETT 806
                 5566777777777777777777777777777777777777777777777777777776665 PP

  == domain 9  score: 1.6 bits;  conditional E-value: 0.47
                  HHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100   61 qklvdaLeeisealkqaanafed 83  
                  q+l+++L+e s +l+++++++ed
  KIR64637.1  983 QRLAHELQEQSAELQRTNAELED 1005
                  55555555555555555555544 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0097       6.7       3      64 ..     156     220 ..     154     233 .. 0.87
   2 !    9.6   0.0    0.0017       1.2       4      70 ..     249     320 ..     246     350 .. 0.84
   3 ?    6.8   0.4     0.012       8.3      33      72 ..     373     414 ..     335     448 .. 0.54
   4 ?    3.3   0.1      0.15     1e+02       5      71 ..     434     505 ..     419     519 .. 0.74
   5 ?    2.8   0.1      0.22   1.5e+02       7      70 ..     528     596 ..     511     611 .. 0.70
   6 ?    1.2   0.1      0.69   4.8e+02       5      71 ..     618     689 ..     603     714 .. 0.68
   7 ?    2.7   0.5      0.23   1.6e+02      22      71 ..     730     781 ..     701     812 .. 0.67
   8 ?    5.6   3.6     0.029        20       6      64 ..     953    1011 ..     950    1042 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0097
  Syntaxin_2   3 snlqkinsnvstleklvkq...Lgtkkdteelreklhelieeinelikktnellkklsqldnsss 64 
                 ++l+++++ v+   + v +   Lg + d + +    ++l++++n+++++ + +++++sq++    
  KIR64637.1 156 DQLSSFSNEVTRVAREVGTegkLGGQADVRGVAGTWKDLTDSVNTMASNLTGQVRSISQVATAVA 220
                 5899999999999999998888*************************************987664 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0017
  Syntaxin_2   4 nlqkinsnvstleklvkq...Lgtkkdteelreklhelieeinelikktnellkklsqldnsssds..qqkl 70 
                  l  ++++v+   + v +   Lg + d +++    ++l++++n ++++ ++++++++q++        +qk+
  KIR64637.1 249 TLRLFAEQVTRVAREVGTegkLGGQADVPNVAGTWKDLTDSVNSMASNLTAQVRNIAQVSTAVARGdlSQKI 320
                 566777888888888877777*************************************98876554665555 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.012
  Syntaxin_2  33 eklhelieeinelikktnellkklsqldnsssds..qqklqk 72 
                    ++l+e++n+l+ + +++++++sq++    +   +qk++ 
  KIR64637.1 373 GTWRDLTENVNQLAGNLTSQVRNISQVSTAVAKGdlSQKITV 414
                 555566666666666666666666665555543344333322 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.15
  Syntaxin_2   5 lqkinsnvstleklvkq...Lgtkkdteelreklhelieeinelikktnellkklsqldnsssds..qqklq 71 
                 l++++  v+   + v +   Lg + + + +    ++l++++n ++++ +++++++++++    +   +qk++
  KIR64637.1 434 LSSFADEVTRVAREVGTegkLGGQAQVRGVAGTWRDLTDNVNSMASNLTAQVRNIASVTTAVAKGdlSQKIT 505
                 445555555555555544445666666666688899********************9998876656766665 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.22
  Syntaxin_2   7 kinsnvstleklvkq...Lgtkkdteelreklhelieeinelikktnellkklsqldnsssds..qqkl 70 
                 +++  v+   + v +   Lg + + + +    ++l++++n ++++ +++++++++++    +   +qk+
  KIR64637.1 528 SFADEVTRVAREVGTegkLGGQAQVKGVLGTWRDLTDNVNSMASNLTSQVRNIASVTTAVAKGdlSQKI 596
                 444444444444444444555555666667778999999999999999999999988877655666665 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 0.69
  Syntaxin_2   5 lqkinsnvstleklvkq...Lgtkkdteelreklhelieeinelikktnellkklsqldnsssds..qqklq 71 
                 l++++  v+   + v +   Lg + + + +    ++l++++n + ++ +++++++++++    +   +qk++
  KIR64637.1 618 LSSFADEVTRVAREVGTegkLGGQAQVKGVSGTWRDLTDNVNSMGSNLTSQVRNIASVTTAVAKGdlSQKIT 689
                 445555555555555544446666667777788888999999999999999999998888775555554443 PP

  == domain 7  score: 2.7 bits;  conditional E-value: 0.23
  Syntaxin_2  22 Lgtkkdteelreklhelieeinelikktnellkklsqldnsssds..qqklq 71 
                 Lg + + + +    ++l+e++n+l+++ + +l+ +++++ s      +q+++
  KIR64637.1 730 LGAQAQVKGVSGTWRDLTENVNQLASTLTTQLRAIAEVSTSVTRGdlTQRIA 781
                 6666666666677778888888888888888888887777665445555553 PP

  == domain 8  score: 5.6 bits;  conditional E-value: 0.029
  Syntaxin_2    6 qkinsnvstleklvkqLgtkkdteelreklhelieeinelikktnellkklsqldnsss 64  
                  + + ++v t++  v++++ ++ teel  + + l +e++e + + ++   +l+  ++ +s
  KIR64637.1  953 TFLERLVLTIGVAVNTIQANRRTEELLAQSQRLAHELQEQSAELQRTNAELEDKAQLLS 1011
                  55678899999999999999999999999999999999887666555444444333333 PP

>> DUF1759  Protein of unknown function (DUF1759)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       9.5   6.5e+03      87     114 ..     150     177 ..     144     183 .. 0.77
   2 ?   -1.7   0.0       3.7   2.5e+03      69     115 ..     224     270 ..     215     279 .. 0.79
   3 ?    5.9   0.0     0.016        11      65     114 ..     312     361 ..     286     368 .. 0.87
   4 ?    6.3   0.0     0.012       8.6      68     114 ..     407     453 ..     383     460 .. 0.89
   5 ?    6.1   0.0     0.014       9.8      68     114 ..     499     545 ..     470     553 .. 0.84
   6 ?    6.0   0.0     0.016        11      68     114 ..     591     637 ..     562     644 .. 0.86
   7 !    6.8   0.0    0.0087         6      68     114 ..     683     729 ..     665     739 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 9.5
     DUF1759  87 lkeedasqlrrivdavneivralealge 114
                 + +  ++ql +++++v ++ r + + g+
  KIR64637.1 150 TVNTMVDQLSSFSNEVTRVAREVGTEGK 177
                 5566788999999999999998876665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.7
     DUF1759  69 nkrkiirellnelmklpslkeedasqlrrivdavneivralealgee 115
                  ++ki      e+ +l ++ ++ +++lr + ++v ++ r + + g+ 
  KIR64637.1 224 LSQKITVGARGEVAELADTMNSLTDTLRLFAEQVTRVAREVGTEGKL 270
                 56667777777888999999999999999999999999998877765 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.016
     DUF1759  65 krYdnkrkiirellnelmklpslkeedasqlrrivdavneivralealge 114
                  r d ++ki  +   e+ +l+++ +  ++ql ++ d+v ++ r + + g+
  KIR64637.1 312 ARGDLSQKITVAAQGEILELKDTVNTMVDQLSSFADEVTRVAREVGSEGK 361
                 56688899999999*****************************9887765 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.012
     DUF1759  68 dnkrkiirellnelmklpslkeedasqlrrivdavneivralealge 114
                 d ++ki  +   e+ +l+++ +  ++ql ++ d+v ++ r + + g+
  KIR64637.1 407 DLSQKITVDAQGEILELKNTVNTMVDQLSSFADEVTRVAREVGTEGK 453
                 66789999999*****************************9877665 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.014
     DUF1759  68 dnkrkiirellnelmklpslkeedasqlrrivdavneivralealge 114
                 d ++ki  +   e+ +l+s+ +  ++ql ++ d+v ++ r + + g+
  KIR64637.1 499 DLSQKITVDARGEILELKSTVNTMVDQLSSFADEVTRVAREVGTEGK 545
                 67899999999*****************************9877665 PP

  == domain 6  score: 6.0 bits;  conditional E-value: 0.016
     DUF1759  68 dnkrkiirellnelmklpslkeedasqlrrivdavneivralealge 114
                 d ++ki  +   e+ +l+s+ +  ++ql ++ d+v ++ r + + g+
  KIR64637.1 591 DLSQKITVDARGEILELKSTVNTMVDQLSSFADEVTRVAREVGTEGK 637
                 67889999999*****************************9877665 PP

  == domain 7  score: 6.8 bits;  conditional E-value: 0.0087
     DUF1759  68 dnkrkiirellnelmklpslkeedasqlrrivdavneivralealge 114
                 d ++ki  +   e+ +l+++ +  ++qlr++ d+v ++ r +   g+
  KIR64637.1 683 DLSQKITVDAQGEILELKNTVNTMVDQLRSFADEVTRVGREVGIEGK 729
                 66889999999**************************9998766655 PP

>> Focal_AT  Focal adhesion targeting region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.26   1.8e+02      23      83 ..     166     226 ..     147     233 .. 0.73
   2 ?    3.2   0.0      0.12        84      38      85 ..     273     320 ..     247     335 .. 0.77
   3 ?    2.8   0.0      0.15   1.1e+02      21      83 ..     348     410 ..     330     415 .. 0.75
   4 ?    4.3   0.0     0.052        36      21      84 ..     440     503 ..     421     509 .. 0.81
   5 ?    4.1   0.1     0.062        43      21      83 ..     532     594 ..     513     601 .. 0.81
   6 ?    4.1   0.0     0.064        44      21      85 ..     624     688 ..     605     710 .. 0.83
   7 ?    4.4   0.0     0.049        34      39      84 ..     734     779 ..     701     787 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.26
    Focal_AT  23 velsqevetakaeeyvslvksvglelrkLltsvdellsslpasarreielaekvlskdlae 83 
                 +++ +ev t    +    v+ v  + ++L  sv+++ s+l  ++r   ++a  v   dl++
  KIR64637.1 166 TRVAREVGTEGKLGGQADVRGVAGTWKDLTDSVNTMASNLTGQVRSISQVATAVARGDLSQ 226
                 44444444444444455799999*****************999998878888887778776 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.12
    Focal_AT  38 vslvksvglelrkLltsvdellsslpasarreielaekvlskdlaeli 85 
                    v +v  + ++L  sv+++ s+l a++r+  ++   v   dl++ i
  KIR64637.1 273 QADVPNVAGTWKDLTDSVNSMASNLTAQVRNIAQVSTAVARGDLSQKI 320
                 55688999999*****************99888888888777877654 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.15
    Focal_AT  21 avvelsqevetakaeeyvslvksvglelrkLltsvdellsslpasarreielaekvlskdlae 83 
                 +v+++ +ev +    +   +v+ v  + r+L ++v++l  +l +++r+  ++   v + dl++
  KIR64637.1 348 EVTRVAREVGSEGKLGGQAQVRGVSGTWRDLTENVNQLAGNLTSQVRNISQVSTAVAKGDLSQ 410
                 556666666666666666799*********************998877666666666667765 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.052
    Focal_AT  21 avvelsqevetakaeeyvslvksvglelrkLltsvdellsslpasarreielaekvlskdlael 84 
                 +v+++ +ev t    +   +v+ v  + r+L  +v+++ s+l a++r+   ++  v + dl++ 
  KIR64637.1 440 EVTRVAREVGTEGKLGGQAQVRGVAGTWRDLTDNVNSMASNLTAQVRNIASVTTAVAKGDLSQK 503
                 56667777777777777789*************************9998888888888888765 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.062
    Focal_AT  21 avvelsqevetakaeeyvslvksvglelrkLltsvdellsslpasarreielaekvlskdlae 83 
                 +v+++ +ev t    +   +vk v  + r+L  +v+++ s+l +++r+   ++  v + dl++
  KIR64637.1 532 EVTRVAREVGTEGKLGGQAQVKGVLGTWRDLTDNVNSMASNLTSQVRNIASVTTAVAKGDLSQ 594
                 56666777777777777789***********************99998888888888888876 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.064
    Focal_AT  21 avvelsqevetakaeeyvslvksvglelrkLltsvdellsslpasarreielaekvlskdlaeli 85 
                 +v+++ +ev t    +   +vk v  + r+L  +v+++ s+l +++r+   ++  v + dl++ i
  KIR64637.1 624 EVTRVAREVGTEGKLGGQAQVKGVSGTWRDLTDNVNSMGSNLTSQVRNIASVTTAVAKGDLSQKI 688
                 56667777777777777789***********************9999888888888888887655 PP

  == domain 7  score: 4.4 bits;  conditional E-value: 0.049
    Focal_AT  39 slvksvglelrkLltsvdellsslpasarreielaekvlskdlael 84 
                  +vk v  + r+L ++v++l s+l ++ r   e+   v   dl++ 
  KIR64637.1 734 AQVKGVSGTWRDLTENVNQLASTLTTQLRAIAEVSTSVTRGDLTQR 779
                 589***********************99998888888888888775 PP

>> PseudoU_synth_1  tRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.09        62      33      76 ..     184     227 ..     158     232 .. 0.79
   2 ?    6.4   0.0     0.017        12      49      77 ..     292     320 ..     272     338 .. 0.80
   3 ?    5.1   0.0     0.044        31      51      77 ..     386     412 ..     347     436 .. 0.79
   4 ?    4.2   0.0     0.085        59      51      77 ..     478     504 ..     440     525 .. 0.83
   5 ?    3.6   0.0      0.13        93      51      77 ..     570     596 ..     549     619 .. 0.82
   6 ?    3.4   0.0      0.15   1.1e+02      54      77 ..     665     688 ..     619     711 .. 0.81
   7 ?   -1.7   0.0       5.6   3.9e+03      52      77 ..     755     780 ..     733     785 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.09
  PseudoU_synth_1  33 ieevsgeekellvvtvkgsgFldhqVRamvgvlfavgqgklspe 76 
                      ++ v+g+ k+l++   + ++ l  qVR + +v+ av +g+ls +
       KIR64637.1 184 VRGVAGTWKDLTDSVNTMASNLTGQVRSISQVATAVARGDLSQK 227
                      555555555555666677788889***************99876 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.017
  PseudoU_synth_1  49 kgsgFldhqVRamvgvlfavgqgklsped 77 
                      + ++ l +qVR++ +v  av +g+ls ++
       KIR64637.1 292 SMASNLTAQVRNIAQVSTAVARGDLSQKI 320
                      5677799***************9998765 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.044
  PseudoU_synth_1  51 sgFldhqVRamvgvlfavgqgklsped 77 
                      +g l +qVR++ +v  av +g+ls ++
       KIR64637.1 386 AGNLTSQVRNISQVSTAVAKGDLSQKI 412
                      566889************998777654 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.085
  PseudoU_synth_1  51 sgFldhqVRamvgvlfavgqgklsped 77 
                      ++ l +qVR++  v  av +g+ls ++
       KIR64637.1 478 ASNLTAQVRNIASVTTAVAKGDLSQKI 504
                      567899************998887665 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.13
  PseudoU_synth_1  51 sgFldhqVRamvgvlfavgqgklsped 77 
                      ++ l +qVR++  v  av +g+ls ++
       KIR64637.1 570 ASNLTSQVRNIASVTTAVAKGDLSQKI 596
                      566889************998887655 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.15
  PseudoU_synth_1  54 ldhqVRamvgvlfavgqgklsped 77 
                      l +qVR++  v  av +g+ls ++
       KIR64637.1 665 LTSQVRNIASVTTAVAKGDLSQKI 688
                      778************998777654 PP

  == domain 7  score: -1.7 bits;  conditional E-value: 5.6
  PseudoU_synth_1  52 gFldhqVRamvgvlfavgqgklsped 77 
                      + l  q Ra+  v   v++g+l+  +
       KIR64637.1 755 STLTTQLRAIAEVSTSVTRGDLTQRI 780
                      5578899************9998765 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         6   4.2e+03      34      94 ..     152     213 ..     145     216 .. 0.70
   2 ?    6.8   0.0     0.012         8      15      95 ..     316     398 ..     301     401 .. 0.87
   3 ?    5.5   0.1     0.028        20      15      94 ..     408     489 ..     400     530 .. 0.70
   4 ?    5.1   0.0     0.039        27      22      95 ..     508     582 ..     488     622 .. 0.67
   5 ?    5.8   0.1     0.023        16      22      99 ..     600     678 ..     585     715 .. 0.66
   6 ?   -0.4   0.1       1.9   1.3e+03      83     104 ..     785     806 ..     774     823 .. 0.76
   7 ?    1.0   6.7       0.7   4.8e+02       9      54 ..     976    1021 ..     969    1038 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 6
     DUF5082  34 tklsdekeslkqkkkklekplnssesWkGk.eennydgirsnlessyqtyvdkldelidaie 94 
                  +++d+ +s++++ + ++    ++  + G+     + g   +l +s++t+ ++l   +++i+
  KIR64637.1 152 NTMVDQLSSFSNEVTRVAREVGTEGKLGGQaDVRGVAGTWKDLTDSVNTMASNLTGQVRSIS 213
                 57778888888888888877777777777766667777777777777777777766666655 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.012
     DUF5082  15 lrseia.aleekIerLkeaktklsdekeslkqkkkklekplnssesWkGk.eennydgirsnlessyqtyvdkldelidaiee 95 
                 l+++i  a +  I +Lk +  +++d+ +s+ ++ + ++    s+  + G+ +   ++g  ++l + +++   +l + +++i++
  KIR64637.1 316 LSQKITvAAQGEILELKDTVNTMVDQLSSFADEVTRVAREVGSEGKLGGQaQVRGVSGTWRDLTENVNQLAGNLTSQVRNISQ 398
                 55555415799*****************************99999*****999999999999999999999988888887765 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.028
     DUF5082  15 lrseia.aleekIerLkeaktklsdekeslkqkkkklekplnssesWkGk.eennydgirsnlessyqtyvdkldelidaie 94 
                 l+++i  + +  I +Lk +  +++d+ +s+ ++ + ++    ++  + G+ +   + g  ++l + ++ + ++l + +++i 
  KIR64637.1 408 LSQKITvDAQGEILELKNTVNTMVDQLSSFADEVTRVAREVGTEGKLGGQaQVRGVAGTWRDLTDNVNSMASNLTAQVRNIA 489
                 555554158999*********************9999999888888888866667777777666666666555555555544 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.039
     DUF5082  22 leekIerLkeaktklsdekeslkqkkkklekplnssesWkGk.eennydgirsnlessyqtyvdkldelidaiee 95 
                     I +Lk++  +++d+ +s+ ++ + ++    ++  + G+ + + + g  ++l + ++ + ++l + +++i +
  KIR64637.1 508 ARGEILELKSTVNTMVDQLSSFADEVTRVAREVGTEGKLGGQaQVKGVLGTWRDLTDNVNSMASNLTSQVRNIAS 582
                 567889999999999999999999999999988888888888777777777775555555555555554444443 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.023
     DUF5082  22 leekIerLkeaktklsdekeslkqkkkklekplnssesWkGk.eennydgirsnlessyqtyvdkldelidaieeEIer 99 
                     I +Lk++  +++d+ +s+ ++ + ++    ++  + G+ + + ++g  ++l + ++ + ++l + +++i + ++ 
  KIR64637.1 600 ARGEILELKSTVNTMVDQLSSFADEVTRVAREVGTEGKLGGQaQVKGVSGTWRDLTDNVNSMGSNLTSQVRNIASVTTA 678
                 5678999**********************99999999999998889999999966666555555555555555444433 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 1.9
     DUF5082  83 vdkldelidaieeEIerLenqi 104
                 + ++ +l+d+i++ I +L+++ 
  KIR64637.1 785 QGEVADLKDNINQMIVTLRETT 806
                 6678888999999998888754 PP

  == domain 7  score: 1.0 bits;  conditional E-value: 0.7
     DUF5082    9 qaqiaelrseiaaleekIerLkeaktklsdekeslkqkkkklekpl 54  
                  ++  a+ +  +  l+e+ ++L+++  +l+d+ + l+++k ++e++ 
  KIR64637.1  976 EELLAQSQRLAHELQEQSAELQRTNAELEDKAQLLSEQKANIETQN 1021
                  5666777888888899999999999999999999999999988875 PP

>> CclA_1  Putative cyclic bacteriocin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1       1.2     8e+02      45      91 ..     191     239 ..     173     245 .. 0.68
   2 ?    4.1   0.1     0.079        54      40      91 ..     278     331 ..     263     342 .. 0.78
   3 ?    1.0   0.0      0.74   5.1e+02      58      91 ..     390     423 ..     357     434 .. 0.72
   4 ?    6.9   0.1      0.01       7.2      40      91 ..     462     515 ..     446     526 .. 0.76
   5 ?    6.2   0.1     0.017        12      44      91 ..     558     607 ..     540     618 .. 0.74
   6 ?    3.9   0.1     0.094        65      39      91 ..     645     699 ..     630     708 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1.2
      CclA_1  45 yaslynvvsaiv.nga.simnavavvtaviagplaaaltavgrglivtl 91 
                 +  l + v ++  n +  +     v tav  g l+  +t   rg +  l
  KIR64637.1 191 WKDLTDSVNTMAsNLTgQVRSISQVATAVARGDLSQKITVGARGEVAEL 239
                 5555555544431222034455578899***********9999988766 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.079
      CclA_1  40 wvgvtyaslynvvsaivn..gasimnavavvtaviagplaaaltavgrglivtl 91 
                  v  t+  l + v ++     a + n   v tav  g l+  +t   +g i+ l
  KIR64637.1 278 NVAGTWKDLTDSVNSMASnlTAQVRNIAQVSTAVARGDLSQKITVAAQGEILEL 331
                 5666777777666555431357889999999***************99999876 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.74
      CclA_1  58 gasimnavavvtaviagplaaaltavgrglivtl 91 
                  + + n   v tav  g l+  +t   +g i+ l
  KIR64637.1 390 TSQVRNISQVSTAVAKGDLSQKITVDAQGEILEL 423
                 24467888899*************9999988876 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.01
      CclA_1  40 wvgvtyasly.nvvsaivn.gasimnavavvtaviagplaaaltavgrglivtl 91 
                  v  t+  l  nv s   n  a + n  +v tav  g l+  +t   rg i+ l
  KIR64637.1 462 GVAGTWRDLTdNVNSMASNlTAQVRNIASVTTAVAKGDLSQKITVDARGEILEL 515
                 45556666651555555553578889999999*****************99876 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.017
      CclA_1  44 tyasly.nvvsaivngasim.navavvtaviagplaaaltavgrglivtl 91 
                 t+  l  nv s   n +s + n  +v tav  g l+  +t   rg i+ l
  KIR64637.1 558 TWRDLTdNVNSMASNLTSQVrNIASVTTAVAKGDLSQKITVDARGEILEL 607
                 45555416667777877655166667789999*************99876 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 0.094
      CclA_1  39 swvgvtyasly.nvvsaivngas.imnavavvtaviagplaaaltavgrglivtl 91 
                   v  t+  l  nv s   n +s + n  +v tav  g l+  +t   +g i+ l
  KIR64637.1 645 KGVSGTWRDLTdNVNSMGSNLTSqVRNIASVTTAVAKGDLSQKITVDAQGEILEL 699
                 4555566666525556667766614566667789999********9999988876 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.0    0.0017       1.2      26      64 ..     986    1023 ..     960    1030 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0017
                  HHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXX CS
       DivIC   26 iaalqaelaklkaeneeLeaevkdLksdedyieerARse 64  
                   ++lq++ a+l+ +n+eLe++ ++L+ +++ ie + R e
  KIR64637.1  986 AHELQEQSAELQRTNAELEDKAQLLSEQKANIETQNR-E 1023
                  3589*********************99******9988.4 PP

>> DUF1843  Domain of unknown function (DUF1843)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       1.5   1.1e+03      10      22 ..     121     133 ..     119     158 .. 0.77
   2 ?   -0.2   0.0       2.1   1.5e+03       9      18 ..     217     226 ..     214     242 .. 0.85
   3 ?    7.1   0.2     0.011       7.8       8      43 ..     308     342 ..     305     344 .. 0.84
   4 ?    2.7   0.1      0.27   1.9e+02       9      43 ..     401     434 ..     398     436 .. 0.76
   5 ?    4.8   0.1      0.06        41       6      43 ..     490     526 ..     488     528 .. 0.86
   6 ?    4.6   0.1     0.066        45       6      43 ..     582     618 ..     581     620 .. 0.85
   7 ?    4.4   0.1     0.077        53       6      44 ..     674     711 ..     673     712 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.5
     DUF1843  10 AiasGDLakMKal 22 
                 A+a+GDL++  al
  KIR64637.1 121 AVADGDLSQHMAL 133
                 99*****986555 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 2.1
     DUF1843   9 qAiasGDLak 18 
                  A+a+GDL++
  KIR64637.1 217 TAVARGDLSQ 226
                 69******97 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.011
     DUF1843   8 qqAiasGDLakMKalaaqaeqqLaeygdiasaleqL 43 
                 + A+a+GDL++  ++aaq e  L+ ++ + ++++qL
  KIR64637.1 308 STAVARGDLSQKITVAAQGE-ILELKDTVNTMVDQL 342
                 57*********777777776.6799999**999999 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.27
     DUF1843   9 qAiasGDLakMKalaaqaeqqLaeygdiasaleqL 43 
                  A+a GDL++  ++ aq  + L+ +  + ++++qL
  KIR64637.1 401 TAVAKGDLSQKITVDAQG-EILELKNTVNTMVDQL 434
                 79*******955555555.4678888888888888 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.06
     DUF1843   6 aiqqAiasGDLakMKalaaqaeqqLaeygdiasaleqL 43 
                 + + A+a GDL++ K ++ ++ + L+ ++ + ++++qL
  KIR64637.1 490 SVTTAVAKGDLSQ-KITVDARGEILELKSTVNTMVDQL 526
                 6789********9.888888888999999999999998 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.066
     DUF1843   6 aiqqAiasGDLakMKalaaqaeqqLaeygdiasaleqL 43 
                 + + A+a GDL++ K ++ ++ + L+ ++ + ++++qL
  KIR64637.1 582 SVTTAVAKGDLSQ-KITVDARGEILELKSTVNTMVDQL 618
                 6789********9.788888888999999999999998 PP

  == domain 7  score: 4.4 bits;  conditional E-value: 0.077
     DUF1843   6 aiqqAiasGDLakMKalaaqaeqqLaeygdiasaleqLk 44 
                 + + A+a GDL++  ++ aq  + L+ +  + ++++qL+
  KIR64637.1 674 SVTTAVAKGDLSQKITVDAQG-EILELKNTVNTMVDQLR 711
                 6789********955555555.56788999999999885 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.31   2.2e+02      74     153 ..     730     808 ..     695     810 .. 0.76
   2 ?    9.4   7.5    0.0017       1.1      56     124 ..     972    1040 ..     957    1064 .. 0.58

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.31
  Jnk-SapK_ap_N  74 kraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklheretellkklkelver 153
                      a+ ++  +  +w++ ++++++  + l+++ r +   ++ + ++    ++   e + e + l+++ ++++ +l+e++++
     KIR64637.1 730 LGAQAQVKGVSGTWRDLTENVNQLASTLTTQLRAIA-EVSTSVTRGDLTQRIAVEAQGEVADLKDNINQMIVTLRETTKK 808
                    556677777888999999999999999999999999.4444444444455556788889999999******999999877 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0017
  Jnk-SapK_ap_N   56 reeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrlee 124 
                      + +e+L  + +r +++ +++  el+++  ++e++++ l+e+ ++ e++nre+el    ++d++++l +
     KIR64637.1  972 NRRTEELLAQSQRLAHELQEQSAELQRTNAELEDKAQLLSEQKANIETQNREIELARLGLEDKAQQLTR 1040
                     334455555555555555555555555555555555555555555555555555444444444444444 PP

>> Anillin_N  Anillin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00044      0.31      21      72 ..     197     249 ..     188     254 .. 0.82
   2 ?   -0.1   0.1       2.1   1.5e+03      21      74 ..     289     343 ..     281     346 .. 0.82
   3 ?   -2.1   0.0       9.1   6.3e+03      28      74 ..     388     435 ..     376     437 .. 0.80
   4 ?    1.4   0.1      0.72     5e+02      24      74 ..     476     527 ..     465     530 .. 0.78
   5 ?    2.9   0.1      0.24   1.7e+02      23      74 ..     567     619 ..     557     622 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00044
   Anillin_N  21 sddvpesslvsplkseaeaasppkp.stssetpvgRrgrlAnLaatigswedD 72 
                 s +  +s+l+ +++s  ++a + +  + s+++ vg rg +A+La t++s  d 
  KIR64637.1 197 SVNTMASNLTGQVRSISQVATAVARgDLSQKITVGARGEVAELADTMNSLTDT 249
                 456667888889999999888877789*********************98886 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 2.1
   Anillin_N  21 sddvpesslvsplkseaeaasppkp.stssetpvgRrgrlAnLaatigswedDls 74 
                 s ++ +s+l+ ++++ a+++ + +  + s+++ v  +g + +L  t+++  d ls
  KIR64637.1 289 SVNSMASNLTAQVRNIAQVSTAVARgDLSQKITVAAQGEILELKDTVNTMVDQLS 343
                 5666788999999999998766666999********************9999987 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 9.1
   Anillin_N  28 slvsplkseaeaasppkp.stssetpvgRrgrlAnLaatigswedDls 74 
                 +l+s++++  +++ + ++ + s+++ v  +g + +L +t+++  d ls
  KIR64637.1 388 NLTSQVRNISQVSTAVAKgDLSQKITVDAQGEILELKNTVNTMVDQLS 435
                 567788888887666555799999999999999999999999999887 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.72
   Anillin_N  24 vpesslvsplkseaeaasppkp.stssetpvgRrgrlAnLaatigswedDls 74 
                 + +s+l+ ++++ a +  + ++ + s+++ v  rg + +L +t+++  d ls
  KIR64637.1 476 SMASNLTAQVRNIASVTTAVAKgDLSQKITVDARGEILELKSTVNTMVDQLS 527
                 4456677777777777666666799*********************999988 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.24
   Anillin_N  23 dvpesslvsplkseaeaasppkp.stssetpvgRrgrlAnLaatigswedDls 74 
                 ++ +s+l+s++++ a +  + ++ + s+++ v  rg + +L +t+++  d ls
  KIR64637.1 567 NSMASNLTSQVRNIASVTTAVAKgDLSQKITVDARGEILELKSTVNTMVDQLS 619
                 4556788899999998877766679**********************999988 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       8.5   5.8e+03      30      50 ..     783     803 ..     733     829 .. 0.63
   2 ?   12.2   9.0   0.00026      0.18      19      95 ..     973    1061 ..     963    1067 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 8.5
                 HHHHHHHHHHHHHHHHHHHHH CS
        OmpH  30 klqaeleakekelqklqeelq 50 
                 + q e++++++++++++ +l 
  KIR64637.1 783 EAQGEVADLKDNINQMIVTLR 803
                 334444444444444444443 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00026
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS........-HHHHHH.....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH   19 aaqeqlekkfkklqaeleakekelqklqeelqkkakkl.e......keekeqe.....lqkkeqelqqkqqqkaqelqkkqqellkpil 95  
                  +  e+l +++++l+ el+++ +elq+  +el++ka+ l e      ++++e e     l++k q+l ++ + k + l++ + el+ p+ 
  KIR64637.1  973 RRTEELLAQSQRLAHELQEQSAELQRTNAELEDKAQLLsEqkanieTQNREIElarlgLEDKAQQLTRASAYKSEFLANMSHELRTPLN 1061
                  44567777788888888888888888888888777766556666444444444999999999999999555555889998888888765 PP

>> Gp-FAR-1  Nematode fatty acid retinoid binding protein (Gp-FAR-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.2   1.5e+03      64     121 ..     239     296 ..     225     347 .. 0.72
   2 ?    0.6   0.1      0.94   6.5e+02      53     114 ..     378     433 ..     287     447 .. 0.69
   3 ?    0.6   0.1      0.93   6.4e+02      57     118 ..     382     437 ..     377     505 .. 0.59
   4 ?   -0.2   0.0       1.7   1.2e+03      66      91 ..     517     542 ..     469     611 .. 0.58
   5 ?   -1.7   0.0       4.7   3.2e+03      64      94 ..     607     637 ..     568     689 .. 0.63
   6 ?    2.8   0.0       0.2   1.4e+02      60     122 ..     695     757 ..     660     766 .. 0.80
   7 ?    0.2   0.8       1.2   8.5e+02      47      80 ..     979    1012 ..     965    1045 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.2
    Gp-FAR-1  64 lkekvdkLspeakeFvkkliakgrkleaqvlagekpdlselkkvaktifnkykslsee 121
                 l + +++L+++ + F++++   +r++ ++   g + d  ++  + k+   + +s+ ++
  KIR64637.1 239 LADTMNSLTDTLRLFAEQVTRVAREVGTEGKLGGQADVPNVAGTWKDLTDSVNSMASN 296
                 6666777888888888888888887777777777766665555555555555554444 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.94
    Gp-FAR-1  53 LyekaeklqaklkekvdkLspeakeFvkkliakgrkleaqvlagekpdlselkkvaktifnk 114
                 L e++++l  +l+ +v ++s+ + + +k+       l +++  +++ +  elk++++t++ +
  KIR64637.1 378 LTENVNQLAGNLTSQVRNISQVSTAVAKG------DLSQKITVDAQGEILELKNTVNTMVDQ 433
                 45555555555555555555555555555......555556666666666666666665555 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.93
    Gp-FAR-1  57 aeklqaklkekvdkLspeakeFvkkliakgrkleaqvlagekpdlselkkvaktifnkyksl 118
                 +++l  +l+ +v ++s+ + + +k+       l +++  +++ +  elk++++t++ +  s 
  KIR64637.1 382 VNQLAGNLTSQVRNISQVSTAVAKG------DLSQKITVDAQGEILELKNTVNTMVDQLSSF 437
                 4444444444444444444444444......4444444444444444555555444443333 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.7
    Gp-FAR-1  66 ekvdkLspeakeFvkkliakgrklea 91 
                   v+++ ++   F++++   +r++ +
  KIR64637.1 517 STVNTMVDQLSSFADEVTRVAREVGT 542
                 44444444444444444444443333 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 4.7
    Gp-FAR-1  64 lkekvdkLspeakeFvkkliakgrkleaqvl 94 
                 lk  v+++ ++   F++++   +r++ ++  
  KIR64637.1 607 LKSTVNTMVDQLSSFADEVTRVAREVGTEGK 637
                 5555555555555555555555555444433 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.2
    Gp-FAR-1  60 lqaklkekvdkLspeakeFvkkliakgrkleaqvlagekpdlselkkvaktifnkykslseea 122
                    +lk+ v+++ ++ + F++++   gr++  +   g++ + + +  + ++  ++ ++l +  
  KIR64637.1 695 EILELKNTVNTMVDQLRSFADEVTRVGREVGIEGKLGAQAQVKGVSGTWRDLTENVNQLASTL 757
                 55689999****************999999988888888888777777777777777776655 PP

  == domain 7  score: 0.2 bits;  conditional E-value: 1.2
    Gp-FAR-1   47 KkkspaLyekaeklqaklkekvdkLspeakeFvk 80  
                   ++s +L+ ++++  a+l++  ++L+++a+ + +
  KIR64637.1  979 LAQSQRLAHELQEQSAELQRTNAELEDKAQLLSE 1012
                  3456666666666666666666666666664443 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1         3   2.1e+03      81     113 ..     380     422 ..     363     527 .. 0.53
   2 ?    8.5   6.3    0.0014      0.96      42     118 ..     972    1044 ..     955    1080 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3
       Atg14  81 erlqelkdklsqlkkeieekkkklaklsdklk..........k 113
                 e++++l   l+++ + i + +  +ak + + k          +
  KIR64637.1 380 ENVNQLAGNLTSQVRNISQVSTAVAKGDLSQKitvdaqgeilE 422
                 4444555555555555555555555544444444433333331 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0014
       Atg14   42 kkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdl 118 
                   ++ e++l++ +   +l+ +++ ++a l+++ ++ +d+ + l+e k+ ++++++eie ++  l+ + ++l  R s  
  KIR64637.1  972 NRRTEELLAQSQ---RLAHELQEQSAELQRTNAELEDKAQLLSEQKANIETQNREIELARLGLEDKAQQLT-RASAY 1044
                  456667777777...99999999999999999999999999999999999999999999999999999994.55443 PP

>> DUF3829  Protein of unknown function (DUF3829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.92   6.4e+02     215     277 ..      97     157 ..      83     160 .. 0.84
   2 ?   -0.9   0.0       1.3   9.2e+02     214     276 ..     275     340 ..     225     344 .. 0.56
   3 ?    0.4   0.2      0.53   3.7e+02     214     277 ..     367     433 ..     317     436 .. 0.68
   4 ?    1.9   0.1      0.19   1.3e+02     170     274 ..     381     477 ..     374     483 .. 0.72
   5 ?    0.7   0.1      0.43   2.9e+02     214     277 ..     459     525 ..     410     528 .. 0.63
   6 ?    0.6   0.1      0.46   3.2e+02     217     277 ..     557     617 ..     502     620 .. 0.77
   7 ?    2.7   0.1       0.1        72     214     279 ..     643     711 ..     594     712 .. 0.78
   8 ?    3.7   0.0     0.052        36     213     276 ..     734     800 ..     724     804 .. 0.80
   9 ?   -3.4   1.7       7.8   5.3e+03     108     153 ..     980    1020 ..     971    1042 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.92
     DUF3829 215 kkpalesfkssakeflaaarkiirrirdkepysdsdkellk.sadsvegspeallrkynelide 277
                 ++ a++s+++ ++   ++  + i  ++d+++   s++++l+ ++ +  g + ++ r  n ++d+
  KIR64637.1  97 DQRAVNSLIDGLGRPTTEIARVIVAVADGDL---SQHMALEiDGRPLRGEYLRIGRTVNTMVDQ 157
                 3468899999999999999999999999997...778888889*******************97 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.3
     DUF3829 214 r...kkpalesfkssakeflaaarkiirrirdkepysdsdkellksadsvegspeallrkynelid 276
                 +       + ++++s++++ ++++  +r i++  ++  + +  +k+   ++g   +l    n ++d
  KIR64637.1 275 DvpnVAGTWKDLTDSVNSMASNLTAQVRNIAQVSTAVARGDLSQKITVAAQGEILELKDTVNTMVD 340
                 244445567777777777777777777777664444333332222444455555566666666665 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.53
     DUF3829 214 r...kkpalesfkssakeflaaarkiirrirdkepysdsdkellksadsvegspeallrkynelide 277
                 +    +  +++++++++++ +++++ +r i +  ++  + +  +k+  +++g   +l +  n ++d+
  KIR64637.1 367 QvrgVSGTWRDLTENVNQLAGNLTSQVRNISQVSTAVAKGDLSQKITVDAQGEILELKNTVNTMVDQ 433
                 2555667788888888888888888888887766555555444445555777777888888888876 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.19
     DUF3829 170 qlidlidrdkitakneldlaklkkklddlekaleklekaskeekrkkpalesfkssakeflaaarkiirrirdkepysdsdkellksadsvegspeall 268
                 ++++l+ + +++ +n+ +++   +k d  +k ++++++ + e k+    ++++++++ +f  ++++  r++ +     ++          v+g+ ++l 
  KIR64637.1 381 NVNQLAGNLTSQVRNISQVSTAVAKGDLSQKITVDAQGEILELKN---TVNTMVDQLSSFADEVTRVAREVGTEGKLGGQA-----QVRGVAGTWRDLT 471
                 555555555666666666666677777777777778888777765...789999999999999999999888765433333.....7888888888888 PP

     DUF3829 269 rkynel 274
                  + n++
  KIR64637.1 472 DNVNSM 477
                 888888 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.43
     DUF3829 214 r...kkpalesfkssakeflaaarkiirrirdkepysdsdkellksadsvegspeallrkynelide 277
                 +       +++++++++++ ++++  +r i++ +++  + +  +k+  ++ g   +l +  n ++d+
  KIR64637.1 459 QvrgVAGTWRDLTDNVNSMASNLTAQVRNIASVTTAVAKGDLSQKITVDARGEILELKSTVNTMVDQ 525
                 2444455677778888888888888888777777666666544445555677777777777777765 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.46
     DUF3829 217 palesfkssakeflaaarkiirrirdkepysdsdkellksadsvegspeallrkynelide 277
                   +++++++++++ +++++ +r i++ +++  + +  +k+  ++ g   +l +  n ++d+
  KIR64637.1 557 GTWRDLTDNVNSMASNLTSQVRNIASVTTAVAKGDLSQKITVDARGEILELKSTVNTMVDQ 617
                 5789999999999999999999999988877777655556666888888888889999886 PP

  == domain 7  score: 2.7 bits;  conditional E-value: 0.1
     DUF3829 214 r...kkpalesfkssakeflaaarkiirrirdkepysdsdkellksadsvegspeallrkynelideyN 279
                 +    +  +++++++++++ +++++ +r i++ +++  + +  +k+  +++g   +l +  n ++d+ +
  KIR64637.1 643 QvkgVSGTWRDLTDNVNSMGSNLTSQVRNIASVTTAVAKGDLSQKITVDAQGEILELKNTVNTMVDQLR 711
                 36667889***********************999888887666667777999999999******99875 PP

  == domain 8  score: 3.7 bits;  conditional E-value: 0.052
     DUF3829 213 kr...kkpalesfkssakeflaaarkiirrirdkepysdsdkellksadsvegspeallrkynelid 276
                 ++    +  +++++++++++ +++++ +r i++  +  ++ +  +++a  ++g +++l  ++n++i 
  KIR64637.1 734 AQvkgVSGTWRDLTENVNQLASTLTTQLRAIAEVSTSVTRGDLTQRIAVEAQGEVADLKDNINQMIV 800
                 445557889******************99999877666655545559999***************96 PP

  == domain 9  score: -3.4 bits;  conditional E-value: 7.8
     DUF3829  108 akgkelhaklltaykafasaskafsaalekvsderekeelekikkd 153 
                  a++++l+ +l ++  +++ ++++++++ + +s+++     ++i+ +
  KIR64637.1  980 AQSQRLAHELQEQSAELQRTNAELEDKAQLLSEQK-----ANIETQ 1020
                  56666666666666666666666666544444443.....334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1069  (0.0596241); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        48  (0.00267723); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 1.28u 0.31s 00:00:01.59 Elapsed: 00:00:00.49
# Mc/sec: 8988.28
//
Query:       KIR64638.1  [L=184]
Description: response regulator receiver protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-25   87.8   0.0    7.2e-25   87.3   0.0    1.2  1  Response_reg  Response regulator receiver domain
     0.0046   17.3   0.1     0.0093   16.3   0.0    1.5  2  FleQ          Flagellar regulatory protein FleQ


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.0     8e-29   7.2e-25       2     111 ..       8     119 ..       7     120 .. 0.93

  Alignments for each domain:
  == domain 1  score: 87.3 bits;  conditional E-value: 8e-29
                   EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEE.SSTSHHHHHHHHHCTES CS
  Response_reg   2 livdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed..pelpviilt.ahseeedavealkagad 95 
                   l+vdD + ++++l+ +l+   +++va +e+g++al++l  +++ +illD +mp+mdG+e++++i++++  +++p+i+lt a ++ + a +++ +ga+
    KIR64638.1   8 LLVDDRRENLMALEAILQGLPVQSVA-VESGEAALKQLLVDDFAVILLDAQMPDMDGFETASHIKRRErtRHVPIIFLTaADKDAQLALRGYAVGAV 103
                   89****************99995665.9************************************88887799*******5566699*********** PP

                   EEEESSG-HHHHHHHH CS
  Response_reg  96 dflsKpfdpeeLlkal 111
                   d+l+Kpfdp  L++++
    KIR64638.1 104 DYLTKPFDPWVLRAKV 119
                   *********9999887 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     1e-06    0.0093       2      84 ..       7      93 ..       6     111 .. 0.80
   2 ?   -2.4   0.0       0.7   6.3e+03      34      52 ..     146     163 ..     131     178 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1e-06
        FleQ  2 iLvidddaerrrdletiLeFlgeeveavsseelsaaleesssealavilgsvs.....sleealealaekdphlPvlllgesdeaeel 84
                 L++dd  e+  +le+iL+ l  + +av+s e++ ++   ++ a++++  ++      ++++ + +  e+  h+P++ l+  d++ +l
  KIR64638.1  7 ALLVDDRRENLMALEAILQGLPVQSVAVESGEAALKQLLVDDFAVILLDAQMPdmdgfETAS-HIKRRERTRHVPIIFLTAADKDAQL 93
                59*******************************88888888888888888888898744444.445578889*****99999988444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.7
        FleQ  34 lsaaleesssealavilgs 52 
                 + +al+++ +ea++++ g+
  KIR64638.1 146 W-RALTDAVDEATTLLRGD 163
                 3.44445555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1317.61
//
Query:       KIR64639.1  [L=170]
Description: hypothetical protein TK50_03115 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-09   37.5   0.1    2.8e-09   36.7   0.1    1.4  1  MarR_2          MarR family
    0.00023   21.6   0.0    0.00036   21.0   0.0    1.3  1  HTH_27          Winged helix DNA-binding domain
    0.00023   21.0   0.0    0.00071   19.4   0.0    1.7  2  TrmB            Sugar-specific transcriptional regulator TrmB
    0.00054   19.8   0.0      0.001   18.9   0.0    1.5  2  HTH_11          HTH domain
    0.00087   19.2   0.0     0.0015   18.4   0.0    1.3  1  MarR            MarR family
     0.0027   17.5   0.1     0.0047   16.7   0.1    1.3  1  HTH_IclR        IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.012   15.3   0.1      0.029   14.0   0.1    1.7  2  GntR            Bacterial regulatory proteins, gntR family
      0.018   14.6   0.0      0.036   13.6   0.0    1.6  1  Sigma70_r4      Sigma-70, region 4
      0.018   15.1   0.0      0.038   14.1   0.0    1.5  1  HTH_20          Helix-turn-helix domain
      0.079   13.2   0.0       0.13   12.5   0.0    1.3  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.12   12.3   0.1       0.21   11.5   0.1    1.5  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
       0.15   11.7   0.0       0.23   11.2   0.0    1.2  1  DUF4423         Domain of unknown function (DUF4423)


Domain annotation for each model (and alignments):
>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.1   1.9e-12   2.8e-09       2      61 ..      29      87 ..      28      88 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.9e-12
                T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
      MarR_2  2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61
                g++++ arvL+ +  ++++ lt++e+ +rl++s +avs +++ L + G+++r+p  + +R
  KIR64639.1 29 GFPRMAARVLFTVMSADDP-LTAAEIGARLDVSAAAVSGAVRYLTQFGMLVREPVKGSRR 87
                999*********9999998.*********************************9877777 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.4e-07   0.00036       5      63 ..      34      91 ..      30      94 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.4e-07
      HTH_27  5 qalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvr 63
                 a vL++++  +++ ++a++  rl+v+++++s +++ Lt  G ++r++ +   r+ r+r
  KIR64639.1 34 AARVLFTVMSADDPLTAAEIGARLDVSAAAVSGAVRYLTQFGMLVREPVK-GSRRDRYR 91
                5679****************************************999995.66666666 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   4.8e-07   0.00071       3      63 ..      27      91 ..      25      94 .. 0.89
   2 ?   -1.6   0.0       1.7   2.5e+03      36      51 ..     104     119 ..     101     132 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.8e-07
                HCHHHHHCCCHCHHHH.HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST...TTEEE CS
        TrmB  3 klGLseyEakvYlaLl.klgpatadeiaeelgvprskvYevLrsLedkGlVerekgr...pklYr 63
                ++G+  + a+v ++++ + +p+ta ei  +l+v+ + v  ++r L + G+  re+ +   + +Yr
  KIR64639.1 27 EVGFPRMAARVLFTVMsADDPLTAAEIGARLDVSAAAVSGAVRYLTQFGMLVREPVKgsrRDRYR 91
                578888999*******999*********************************9997766555776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.7
                 CHCHHHHHHHHHHCTS CS
        TrmB  36 rskvYevLrsLedkGl 51 
                 ++ +Y+ L  L d G+
  KIR64639.1 104 KTGIYKNLIDLADGGV 119
                 6778999988888776 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   6.9e-07     0.001       6      48 ..      38      84 ..      34      91 .. 0.83
   2 ?   -3.1   0.0       5.3   7.9e+03      28      43 ..     103     118 ..     102     126 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.9e-07
      HTH_11  6 lelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelg....vpIes 48
                l  +++a++p++++e+  +L+vS ++v   ++ L+  g     p+ +
  KIR64639.1 38 LFTVMSADDPLTAAEIGARLDVSAAAVSGAVRYLTQFGmlvrEPVKG 84
                555789999**************************999665555555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.3
      HTH_11  28 SrrtvrrdIkaLeelg 43 
                 +++ +++ + +L + g
  KIR64639.1 103 TKTGIYKNLIDLADGG 118
                 6677787776665555 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   9.9e-07    0.0015      16      57 ..      46      87 ..      34      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 9.9e-07
                TTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTT CS
        MarR 16 gplsvseLakklgvskstvtrvldrLekkGlieRskspeDrR 57
                +pl+ +e++ +l vs ++v+ +++ L + G++ R++ ++ rR
  KIR64639.1 46 DPLTAAEIGARLDVSAAAVSGAVRYLTQFGMLVREPVKGSRR 87
                469*********************************999998 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   3.1e-06    0.0047       5      52 .]      34      81 ..      34      81 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.1e-06
                HHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE... CS
    HTH_IclR  5 alaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqdg 52
                a+++L  + +a+ +lt +e+ +r++++ ++v++ ++ L++ G++ +++
  KIR64639.1 34 AARVLFTVMSADDPLTAAEIGARLDVSAAAVSGAVRYLTQFGMLVREP 81
                689999999***********************************9875 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.9e-05     0.029      16      62 ..      40      85 ..      32      86 .. 0.89
   2 ?   -2.2   0.0       2.3   3.4e+03      50      62 ..     115     127 ..     103     128 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.9e-05
                TSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEE CS
        GntR 16 gelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGt 62
                ++ ++ d+L +  e+ a+++Vs+  v  A r L++ g+++r++ +G 
  KIR64639.1 40 TVMSADDPL-TAAEIGARLDVSAAAVSGAVRYLTQFGMLVREPVKGS 85
                6678999**.********************************98885 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.3
                 HTTSEEEETTCEE CS
        GntR  50 aeglverrqgrGt 62 
                 a+g v + +grGt
  KIR64639.1 115 ADGGVAALNGRGT 127
                 3556677778887 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.4e-05     0.036      18      38 ..      45      65 ..      27      70 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.4e-05
                TTT--HHHHHHHHTS-HHHHH CS
  Sigma70_r4 18 geglTleEIgerlgiSrerVr 38
                +++lT +EIg+rl++S  +V+
  KIR64639.1 45 DDPLTAAEIGARLDVSAAAVS 65
                899*************99997 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.5e-05     0.038      20      57 ..      43      80 ..      33      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.5e-05
                STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 20 araegltaselaerldlskntlsyHLrvLeeagLvevv 57
                + +++lta+e+ +rld+s + +s  +r L + g + ++
  KIR64639.1 43 SADDPLTAAEIGARLDVSAAAVSGAVRYLTQFGMLVRE 80
                789********************999999999988776 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.7e-05      0.13      15      59 ..      40      84 ..      35      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.7e-05
                    HHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTE CS
  Fe_dep_repress 15 tlseekkvvktkdlaerLnvspssVsemlkkLekdGyveyekykg 59
                    t+    ++ + +++  rL+vs++ Vs  ++ L + G ++ e+ kg
      KIR64639.1 40 TVMSADDPLTAAEIGARLDVSAAAVSGAVRYLTQFGMLVREPVKG 84
                    5555567788899************************99999887 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00014      0.21      13      40 ..      43      70 ..      36      72 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
  HTH_AsnC-type 13 qedaRisyaeLAervGlSestvlrRvrr 40
                    +d  ++ ae+++r+ +S+++v   vr 
     KIR64639.1 43 SADDPLTAAEIGARLDVSAAAVSGAVRY 70
                   5777899***************876665 PP

>> DUF4423  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015      0.23      25      71 ..      37      80 ..      26      89 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
     DUF4423 25 virellplkdfkadpeelakrlrpkisaeevekalefLlklgllkkd 71
                v+++++++ d   + +e+  rl   +sa+ v+ a+++L++ g+l ++
  KIR64639.1 37 VLFTVMSADDP-LTAAEIGARLD--VSAAAVSGAVRYLTQFGMLVRE 80
                45555555555.7899*******..*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1239.52
//
Query:       KIR64640.1  [L=305]
Description: ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-24   87.0   0.0    2.2e-24   86.5   0.0    1.2  1  ABC_tran     ABC transporter
    7.4e-13   49.0   0.0    8.6e-07   29.1   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    4.1e-05   24.2   0.0    8.2e-05   23.3   0.0    1.5  1  DUF4162      Domain of unknown function (DUF4162)
  ------ inclusion threshold ------
      0.028   14.8   0.2      0.051   14.0   0.1    1.5  1  AAA_16       AAA ATPase domain
      0.033   13.8   0.0      0.061   12.9   0.0    1.3  1  AAA_27       AAA domain
      0.033   13.9   0.2      0.071   12.8   0.2    1.6  1  AAA_30       AAA domain
      0.039   13.7   0.0      0.069   12.9   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
       0.13   12.8   0.0       0.19   12.2   0.0    1.2  1  AAA_23       AAA domain
       0.13   12.1   0.0       0.23   11.3   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
       0.15   12.2   0.1       0.31   11.2   0.0    1.9  2  AAA_33       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0   1.2e-27   2.2e-24       1     137 []      20     159 ..      20     159 .. 0.92

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 1.2e-27
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlkeqeleslrkeigvlpqepqlfpeltvren..........esdeeieka 88 
                 l+ ++l++++ge+++++G+nGaGKSt +++l+gll+ ++G ++l  g+++++     l+++++++p + +l+p+lt +e            ++++ +++
  KIR64640.1  20 LDGLDLTVRAGEVHGFLGPNGAGKSTAIRVLLGLLRADAGAVRLLgGDPWRD--AVALHRRLAYVPGDVTLWPNLTGGEVidllgrmrggLDRARRDEL 116
                 6899***************************************996666666..9*********************9999*999999998888889999 PP

                 HHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  89 lsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 l+ ++l+  k+       + +S+G +q+v l++al+++++ll+lDEpt+
  KIR64640.1 117 LAAFELDPRKKG------RAYSKGNRQKVGLVAALASDAELLILDEPTS 159
                 999999884444......66***************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.1e-06     0.002       3      26 ..      34      58 ..      32      77 .. 0.78
   2 !   29.1   0.0   4.8e-10   8.6e-07     237     297 ..     131     188 ..      98     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.1e-06
      AAA_21  3 vliGpNgsGKSnLLdaldllarl.d 26
                ++ GpNg+GKS+ ++ l +l r+ +
  KIR64640.1 34 GFLGPNGAGKSTAIRVLLGLLRAdA 58
                789*****************98743 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 4.8e-10
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ellkelsrngaQviltTH 297
                  S G ++  +l++al++++    ll++DEp +gL+P l+++++  ++++++++g  v+l++H
  KIR64640.1 131 YSKGNRQKVGLVAALASDA---ELLILDEPTSGLDP-LMEEVFqHWVRRARAEGRTVLLSSH 188
                 499****************...9*************.7777777****************** PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   4.6e-08   8.2e-05       1      79 [.     212     289 ..     212     291 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.6e-08
                 E-HHHHHTTS-SSEEEEE..-------..---EEEE-TTS-EEEEE-----------------EEEEEEEE---HHHHHHH CS
     DUF4162   1 GtleeiKrsygknrieve..adaeelleepgveeveeeggelelkledeeaanellkaltsgveirsFeeeePsLndIFie 79 
                 Gtl+e+++  +++ +  e  + +  l+ +pgv++++ +g+++++ +++  a  + l++l + + +rs+  ++P+L++ F++
  KIR64640.1 212 GTLSELRHL-QRTSVDAElaGPPHGLAGLPGVHDLRVDGDRVRFDVDT-PALDTALRRL-TEIGVRSLVSRPPTLEELFLR 289
                 888888886.4455555554889999*********************8.69********.9******************98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   2.8e-05     0.051       4     142 ..      15     155 ..      12     186 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
      AAA_16   4 GReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggif..lrgkcdql....esaipy....salaqalareellrqlldeaesa 92 
                 GR + l+ L     +vr+g+  +  + G+ G GKs+ +r ll  l++d g +  l g+  +     ++ ++y    ++l+  l+  e++  l+++ +  
  KIR64640.1  15 GRTRALDGLDL---TVRAGE--VHGFLGPNGAGKSTAIRVLLGLLRADAGAVrlLGGDPWRDavalHRRLAYvpgdVTLWPNLTGGEVIDLLGRM-RGG 107
                 55555554444...344553..34468***************98888856664433333333344466677788855588888887888888888.555 PP

      AAA_16  93 eleawrekleeala.........avpelagaeasrllellkrllallsrderplvlvlD 142
                 + +a r++l++a++                   s  +++   l+a l++d++  +l+lD
  KIR64640.1 108 LDRARRDELLAAFEldprkkgraY---------SKGNRQKVGLVAALASDAE--LLILD 155
                 777777777777774444444440.........4444444444422233233..33333 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.4e-05     0.061      18      50 ..      22      54 ..      11      55 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.4e-05
      AAA_27 18 sldfsaeeadlhliyGpNEAGKstalrAisdll 50
                 ld+   + ++h  +GpN AGKsta+r +  ll
  KIR64640.1 22 GLDLTVRAGEVHGFLGPNGAGKSTAIRVLLGLL 54
                47888889999***************9888776 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   3.9e-05     0.071      19      53 ..      31      65 ..      23     186 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.9e-05
      AAA_30 19 rvavltGpAGtGKttalkalreaweaaggrviglA 53
                 v+   Gp G+GK+ta+++l  +++a+ g v +l 
  KIR64640.1 31 EVHGFLGPNGAGKSTAIRVLLGLLRADAGAVRLLG 65
                477889*******************9988888764 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.8e-05     0.069      16      39 ..      24      47 ..      18      60 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.8e-05
      AAA_29 16 tieidlkgatlltGpsGsGKSTll 39
                +++++  +++ + Gp+G+GKST +
  KIR64640.1 24 DLTVRAGEVHGFLGPNGAGKSTAI 47
                556664458889**********88 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011      0.19      24      39 ..      35      50 ..      18      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
      AAA_23 24 ItGpNGaGKTTildAi 39
                + GpNGaGK+T ++ +
  KIR64640.1 35 FLGPNGAGKSTAIRVL 50
                78*********99865 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00013      0.23      97     130 ..      27      61 ..       6      65 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
                  CTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  97 lkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  ++  ++  ++G+ G+GKSt i +ll+ l++  g+v
   KIR64640.1  27 VRAgEVHGFLGPNGAGKSTAIRVLLGLLRADAGAV 61 
                  44448999****************99887777766 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00017      0.31       4      37 ..      35      73 ..      32     190 .. 0.79
   2 ?   -3.7   0.0       6.9   1.2e+04     122     140 ..     250     268 ..     246     270 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
      AAA_33  4 lvGlpGsGKstlaerllkklg....avl.lssdtlrrrl 37
                + G++G+GKst ++ ll  l     av+ l  d +r+++
  KIR64640.1 35 FLGPNGAGKSTAIRVLLGLLRadagAVRlLGGDPWRDAV 73
                78************9975555555655435666655544 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6.9
      AAA_33 122 gddrsevpeealdrqkarf 140
                  ++r++v++ ald+ ++r+
  KIR64640.1 250 DRVRFDVDTPALDTALRRL 268
                 4678888888888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2225.20
//
Query:       KIR64641.1  [L=111]
Description: anti-anti-sigma factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-16   59.7   2.9    3.3e-16   59.4   2.9    1.1  1  STAS_2    STAS domain
    7.9e-11   41.6   0.0      9e-11   41.4   0.0    1.0  1  STAS      STAS domain


Domain annotation for each model (and alignments):
>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   2.9   3.7e-20   3.3e-16       1      79 [.      19      98 ..      19      99 .. 0.97

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 3.7e-20
      STAS_2  1 LsLsGeldldtaaelreqllealaag.aevvvDlsgvervDsaalalLlalartarargrrlvlrglppalrrlldlyGl 79
                L+L+Ge+d+ taa+l  ++ eala++  ++v+Dl+gv+++Ds +l+ L+ l r a  +++ lvl+++++ l+r+ld++Gl
  KIR64641.1 19 LRLAGEIDMLTAAQLSTAVNEALADPpPRIVLDLGGVTFCDSQGLGTLVVLSRKASHAQSLLVLTNVGDFLLRVLDITGL 98
                89*********************77779***************************************************9 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0     1e-14     9e-11       4     102 ..      10      99 ..       7     106 .. 0.92

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1e-14
                 EEECTTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHHHTTCG CS
        STAS   4 aeeiegililrldgpidfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevreklektgff 102
                 + ++ +  +lrl g+id  +a ++   +++a+++ p           ++ldl++v+f Ds G+++L+ + ++    +  +vl n+ + + + l+ tg+ 
  KIR64641.1  10 VHRTGDEAVLRLAGEIDMLTAAQLSTAVNEALADPP---------PRIVLDLGGVTFCDSQGLGTLVVLSRKASHAQSLLVLTNVGDFLLRVLDITGLR 99 
                 556666689*************************96.........99*************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 800.71
//
Query:       KIR64642.1  [L=444]
Description: glutamate-1-semialdehyde aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-82  275.9   0.0    5.1e-82  275.7   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
     0.0002   20.6   0.0    0.00028   20.2   0.0    1.3  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.7   0.0   5.7e-86   5.1e-82       7     406 .]      47     431 ..      41     431 .. 0.93

  Alignments for each domain:
  == domain 1  score: 275.7 bits;  conditional E-value: 5.7e-86
                  --SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHH CS
  Aminotran_3   7 dnlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAl 104
                  +  + ++ ++eG +l+d+dg+ry+Dlv+s+ +++lGhahP+vv+av+++aa    +sfg  t  +++ la ++++ +p   ++v l+nsG+eA+++A+
   KIR64642.1  47 T--PRFMVRGEGPWLYDADGRRYVDLVCSWGPLLLGHAHPAVVDAVQAAAALG--TSFGTPTPGEVE-LAAEIVDRTPV--EQVRLVNSGTEATMSAI 137
                  3..48999**************************************9999888..999999998865.666788999**..***************** PP

                  HHHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCE CS
  Aminotran_3 105 KlarkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiq 202
                  +lar       +t ++kii+f g++HG++ + l+++gs  +++tl  p +p+v+ +++  ++vl++n+        ++e+  +++ +++aAvi+E+  
   KIR64642.1 138 RLARG------HTGRSKIIKFAGCYHGHVDALLAAAGS--GVATLGLPDSPGVTGAAAGETIVLPYND------VAAVEEAFAAQGQHIAAVITEAAA 221
                  *****......***************************..****************************......5556666689************** PP

                  TTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTT..TTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTS...B--TTTT-H CS
  Aminotran_3 203 gegGvvvaspeflaklrelckkhdvllivDEvqtGf..GrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgs...hgsTfgGnp 295
                  g++Gvv++ ++f+a+l+ +++ h++llivDEv+tGf  +r+G + +l+  +v +Dl t +K+++gGlp++a+ ++ae+m +lap +   +++T +Gnp
   KIR64642.1 222 GNMGVVAPRDGFNAQLARIAHAHGALLIVDEVMTGFrvSRSG-WHGLD--PVDADLWTYGKVMGGGLPAAAFGGRAEIMARLAPAGpvyQAGTLSGNP 316
                  ************************************99****.99999..**********************************99999********* PP

                  HHHHHHHHHHHHHHH...TTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC............HHHHHHHHHCTEE-EEET CS
  Aminotran_3 296 lacavalavleiiee...ekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke............keilkkakekGvlilsaG 378
                  laca+ la+l+++ +     l + a+ +g+  +++L ++     v +++  +G m++i ++ +a+v +            +++++ +++ Gv++ ++ 
   KIR64642.1 317 LACAAGLATLRLADDavyRRLDDTAAVVGKLASDALAAAG----VPHRLSYAGSMFSI-FFTDADVVDydsartqqvpafRAFFHSMLADGVYLPPSA 409
                  ************9997777889999999999999999998....899***********.555555555699*********99***********88877 PP

                  TTEEEE---TT--HHHHHHHHHHHHHHH CS
  Aminotran_3 379 dnvirllppliitdeeidelleilkkal 406
                        +++++++++  d++le++  al
   KIR64642.1 410 ------FESWFVSAAIDDAALERIASAL 431
                  ......9999999999999999998875 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   3.1e-08   0.00028     129     362 ..     195     430 ..      78     431 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3.1e-08
                    EE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHH.HHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTT CS
  Aminotran_1_2 129 hldlealeealkeapegnkktkvilvesphNPtGtvatleele.klldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKaf 223
                     +d+ a+eea +  +   + +  +++e +  + G+va+++    +l+++a+++++ll+vDe+  gf    ++    ++++++ ++   + +++K +
     KIR64642.1 195 YNDVAAVEEAFAA-Q--GQHIAAVITEAAAGNMGVVAPRDGFNaQLARIAHAHGALLIVDEVMTGFRVSRSG----WHGLDPVDA--DLWTYGKVM 281
                    4799999998886.3..44458******************9964799*******************998543....778877666..556889999 PP

                    ..SSGGG-EEEEEEEHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHH.HHHHHHHHHSTEEEECCS.CSSEEEEEET CS
  Aminotran_1_2 224 ..GlaGeRvGyilgnaavvsqlrklsrpfls.ssllqaavaaalsdallkqs.eleemrqrlqkrr.kelrdeLaelglkvlasq.sgmflltdls 313
                      Gl+    +++ g a++   l+ +   +   + ++ +++ aa  ++l+ ++  +  + +  ++   k   d+La++g+++  s  + mf++  ++
     KIR64642.1 282 ggGLPA---AAFGGRAEIMARLAPAGPVYQAgTLSGNPLACAAGLATLRLADdAVYRRLDDTAAVVgKLASDALAAAGVPHRLSYaGSMFSIFFTD 374
                    667888...888889999999999888888885555555555555555544444444444444444044457787779999887768899998888 PP

                    HH.............CHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHH CS
  Aminotran_1_2 314 ae.............takelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelvea 362
                    a              +  +++ ++l   gvy+ p +    ++++ ++  + +++ le++++a
     KIR64642.1 375 ADvvdydsartqqvpAFRAFFHSMLAD-GVYLPP-SA--FESWF-VSA-AIDDAALERIASA 430
                    889898777777776666777779999.999988.22..25665.333.6777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3029.62
//
Query:       KIR64643.1  [L=215]
Description: hypothetical protein TK50_03140 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-36  123.8   0.3    8.8e-36  123.4   0.3    1.1  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.3   4.9e-40   8.8e-36       2     185 ..       7     189 ..       6     196 .. 0.94

  Alignments for each domain:
  == domain 1  score: 123.4 bits;  conditional E-value: 4.9e-40
                 EEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH..HS CS
  His_Phos_1   2 yLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidaiysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiaeeypee 100
                 +++RHGe+++  +  +++   + L+e+G+++A+a+a+ la++++ ++++Spl+Ra+qTae+ia++ glpv +de+L E +   +eg++ +  + ++++ 
  KIR64643.1   7 HVLRHGEVHNPGQILYGRLPGFRLSELGVQMAKAAAQGLAERHVVHVVASPLERAQQTAEPIAAQFGLPVGVDERLIE-SANWFEGKKVSPGDGSFRDP 104
                 679********9988999************************************************************.9999****999999998887 PP

                 HHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHH.T--GGGGGGB---TT-EEEEEE-SS- CS
  His_Phos_1 101 leawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarll.glpleelrrleldnaslsvlefdegg 185
                  ++w  +++ v+p++gE ++++a+R+ aal++++ + eg+++++VsH+ +i++l +++  +  ++++r+ ++  asl+ ++fd+ +
  KIR64643.1 105 RNWWVLRDP-VTPSWGEAYRAIAERMFAALHAARVAAEGREAVLVSHQLPIWTLRRYVErKRLWHDPRKRQCGLASLTSFHFDGAK 189
                 777777776.89999********************************************8888889999999**********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.89
# Mc/sec: 733.81
//
Query:       KIR64644.1  [L=191]
Description: alkyl hydroperoxide reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-18   66.0   0.0    3.9e-18   65.6   0.0    1.2  1  AhpC-TSA       AhpC/TSA family
    2.8e-16   59.5   0.0    3.7e-16   59.1   0.0    1.1  1  Redoxin        Redoxin
    3.7e-09   36.8   0.0    5.5e-09   36.2   0.0    1.2  1  Thioredoxin_8  Thioredoxin-like
    9.3e-08   32.0   0.0    1.8e-07   31.1   0.0    1.4  1  Thioredoxin    Thioredoxin
    0.00015   22.2   0.0    0.00021   21.7   0.0    1.2  1  Thioredoxin_2  Thioredoxin-like domain
     0.0073   16.5   0.0      0.011   15.9   0.0    1.3  1  Thioredoxin_7  Thioredoxin-like


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.3e-21   3.9e-18       4     122 ..      48     161 ..      46     163 .. 0.88

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 1.3e-21
                 B----EEESTTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHHHHTT-EE CS
    AhpC-TSA   4 kapdfelknadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsDeegkvakaygvlk 102
                 +ap+  ++   g++++ ++  g++vv++f+ + wcp+C++e+ +l++ y++ k  gv+ +g++v++  + +   e+ ++++p l D+ + +a a+++  
  KIR64644.1  48 AAPKLAGELLTGGSYDIAKDLGQVVVVNFWGS-WCPPCRAEADDLEATYQATKGSGVTFLGINVQDNRDKALAFEEGRVTYPSLFDPPSRLALAFDIA- 144
                 57888888888889999878899*********.*******************************666655555555669*******************. PP

                 TTTTECSCEEEEE-TTSBEE CS
    AhpC-TSA 103 eekglalratfvidkegkir 122
                      +++at+++d++g ++
  KIR64644.1 145 ---PNTIPATVILDRDGRVA 161
                 ...569***********997 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   1.3e-19   3.7e-16       6     134 ..      49     167 ..      44     179 .. 0.88

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 1.3e-19
                 B---ECCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHHTT-TSEEEE-TTSHHHHHTT-T CS
     Redoxin   6 aPdftlplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgkeglkfpvlsDgsaaftkalGlr 104
                 aP++  +l    g s+++++  g++vvvnf+ + +cP+C+ae+ +le +++  k +gv++++++++++     + ++  +++p l D+ + ++ a++++
  KIR64644.1  49 APKLAGEL--LTGGSYDIAKDLGQVVVVNFWGS-WCPPCRAEADDLEATYQATKGSGVTFLGINVQDNRDKALAFEEGRVTYPSLFDPPSRLALAFDIA 144
                 56555445..678899999977***********.************************************9999999999*****************55 PP

                 TEEE.GGGEEE-EEEEEEETTEEEEEEESS CS
     Redoxin 105 leedaseglrtpryavidedgkvvylevep 134
                           +p+++++d+dg+v  +++ +
  KIR64644.1 145 --PN-----TIPATVILDRDGRVAVVIRSA 167
                 ..44.....9************98877665 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   1.8e-12   5.5e-09       1      95 []      69     160 ..      69     160 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.8e-12
                    .SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS-TTSEE.EE-TT-HHHHTT-S--TT-SEEEEE-TT-BE CS
  Thioredoxin_8   1 gkvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkknkkpwlsvpfddkkrnklkkkynvkaiPtlvvldkngev 95 
                    g+vv++ f+ swcppc+a    l + y+  k + +v ++ +++  ++++  ++ +      +   fd ++r +l+     + iP +v+ld++g+v
     KIR64644.1  69 GQVVVVNFWGSWCPPCRAEADDLEATYQATK-GSGVTFLGINVQDNRDKALAFEEGR--VTYPSLFDPPSRLALAFDIAPNTIPATVILDRDGRV 160
                    689***************************9.9***********9999998888888..55555899999***********************97 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   5.9e-11   1.8e-07      19      68 ..      70     120 ..      61     131 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 5.9e-11
                  SEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT.TSEEEEEETTTSHHHHHHT CS
  Thioredoxin  19 klvlveFyApwCghCkalaPeleklaeelkd.kvklakvdvdenedlakky 68 
                  + v+v+F+ +wC++C+a a  le++ +++k+  v+++ ++v++n+d a  +
   KIR64644.1  70 QVVVVNFWGSWCPPCRAEADDLEATYQATKGsGVTFLGINVQDNRDKALAF 120
                  689****************************9************9988765 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0     7e-08   0.00021       4     107 ..      68     175 ..      65     177 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 7e-08
  Thioredoxin_2   4 ngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkd........ieenvelarky..gvrgtPtivfldg 89 
                     g+ v+v f+ ++Cp C++  ++l+    ++ +      ++ + +  ++++ +++k+ af++         +  + la ++    +  P++v+ld 
     KIR64644.1  68 LGQVVVVNFWGSWCPPCRAEADDLEAT--YQAT-----KGSGVTFLGINVQDNRDKALAFEEgrvtypslFDPPSRLALAFdiAPNTIPATVILDR 156
                    5889***************88888888..7777.....8899****************************55556666665116689********* PP

  Thioredoxin_2  90 k.eivarlpGyvpaeelea 107
                    + +++ +++ +v++++l+ 
     KIR64644.1 157 DgRVAVVIRSAVTQDRLQP 175
                    *99999******9999976 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.7e-06     0.011      12      78 ..      64     130 ..      61     155 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.7e-06
                    HHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HH.HT-EEEEESS.--S-GGG.-TT-..--SSEE CS
  Thioredoxin_7  12 kaaergkpvlvffgaswcftCqalerdflsdeevkaala.ekfvllrvdv.terdanilelde..qgvPvv 78 
                     a+  g+ v v+f  swc++C+a ++d++ +   +a  + + + +l ++v ++rd+ + +++e    +P +
     KIR64644.1  64 IAKDLGQVVVVNFWGSWCPPCRAEADDLEAT--YQA-TKgSGVTFLGINVqDNRDKAL-AFEEgrVTYPSL 130
                    5777889999*******************99..555.555999999999988999988.665543336654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1346.76
//
Query:       KIR64645.1  [L=302]
Description: cytochrome C biogenesis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-46  158.4  14.4    1.9e-35  122.7   9.5    2.1  2  DsbD      Cytochrome C biogenesis protein transmembrane regio


Domain annotation for each model (and alignments):
>> DsbD  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.2   5.6e-14     1e-09       3      36 ..      23      56 ..      21      63 .. 0.90
   2 !  122.7   9.5   1.1e-39   1.9e-35      32     212 ..     104     280 ..      98     281 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 5.6e-14
        DsbD  3 laGllsflsPCilpliPaylsyisgvsvedvkte 36
                laGl+sflsPCilpl+P ylsy++g++ +d +  
  KIR64645.1 23 LAGLVSFLSPCILPLVPGYLSYVTGLAGTDLERA 56
                9*************************99998865 PP

  == domain 2  score: 122.7 bits;  conditional E-value: 1.1e-39
        DsbD  32 dvkte.kkkvkvllkallFvlGlslvfvslglsaaflgqllkdvkevirrvaglivillGlhflgvfkievleklklllkikkkaelsvlgalllGltF 129
                  ++t+ + k +vl  +llF+ G++ vf++ ++ +a +g++l ++++ +++ +g ++++lGl f+gv+    l+++ ++   ++   +  lga ++G +F
  KIR64645.1 104 GIRTGaAVKGRVLAGTLLFIAGFTAVFTATAILFASVGRVLIQYERQLEIGVGALIVVLGLAFVGVLP--GLQREFRI---QRLPAAGLLGAPVFGAVF 197
                 566662344499*****************************************************876..66666665...66777778********** PP

        DsbD 130 algwsPCigPvlasvlalaaskeslakgallllvyvlGlaipfllvglllellkkklkslkkyskaveiaggvllvllGvlll 212
                 al w PC+gP la+vl +a+  ++l  +++l ++y lGl++pf+++gl +++l+ +++ ++++s++v+ +ggvll+l+G+ l+
  KIR64645.1 198 ALSWMPCTGPTLAAVLGMATPGGQLDRAVVLAVAYCLGLGVPFVVFGLAFHRLLGVFRAVRRNSRWVTRVGGVLLILIGLALV 280
                 *******************************************************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2009.47
//
Query:       KIR64646.1  [L=573]
Description: cytochrome C biogenesis protein ResB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.1e-120  402.2   0.0   5.4e-120  401.4   0.0    1.4  1  ResB      ResB-like family


Domain annotation for each model (and alignments):
>> ResB  ResB-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  401.4   0.0    3e-124  5.4e-120       1     494 [.      36     540 ..      36     541 .. 0.90

  Alignments for each domain:
  == domain 1  score: 401.4 bits;  conditional E-value: 3e-124
        ResB   1 mrlAlvLLlllaiaSiiGtvlpQnepsanyvqqyiaegpflaeildkLglfdvYsswWFllilalLvvSlvgCilprlpkllkalrkkrpkraekslkr 99 
                 mr+Al+LL+lla+a+i+G+vlpQ+  ++++v++y+ e+p+la+ ld++g f+v+ s+WF++i++lL++Sl+gCi+prl ++++alr ++p++a+k+l+r
  KIR64646.1  36 MRTALILLFLLAVAAIPGSVLPQRGVNPENVNKYFVEHPDLAPKLDRIGAFEVFGSVWFSAIYLLLFTSLIGCIVPRLRDHVRALR-AKPPAAPKRLDR 133
                 9***********************99999*********************************************************.99********** PP

        ResB 100 lphsaelelaeap..e.....eaveraaavLkkrgyrvrveeedgavslaAekGrlsrlGnlvfHialvliligallgslfgfrgnvivpe..Gqsfnn 189
                 lp++a l+ ++++  +     +ave++aa L++r++rv+v+     + ++AekG+l+++Gnl+fH +l+ +l+g++lgs++g++gn ++++  +++f+n
  KIR64646.1 134 LPQHAVLTGVATSgpAtvegiAAVEAIAAELRRRRWRVQVR----GTEVSAEKGYLKETGNLLFHTSLIAVLLGVALGSWYGWHGNKLLVAgaDNAFCN 228
                 ****988885444343233333349999************6....358*******************************************55678999 PP

        ResB 190 ail..dsfrdGslvqe...lpfslrldkFtveyydtkgqpkeFesdvtvldkgkeakektikVNhPlrykgvriYqssfgdggklelklvllkgksaqe 283
                 ++   ++ + G  v++    pf+l+l+kF+++++++  qp++++++v+v + g++++++  +VN+Plr++g+++Y++++                    
  KIR64646.1 229 TRQqyAEAKLGPRVDSadlPPFCLTLKKFDATFLES-TQPESYRATVDVEEAGRATRTASFSVNDPLRLGGANVYLLGH-------------------- 306
                 9989999999****9999888**************8.**************999*************************.................... PP

        ResB 284 lelpgtvslslralelaneelrnvgpavqfkvrdpdgevan.mepv.pq.dgnvlssgvrk.p...............qlafqglflPtaees.ekgel 362
                                         g+a++++ +d+ g++++ + p  ++ d++++s+gv   p               q af+gl+lPta ++     +
  KIR64646.1 307 ------------------------GYAPVLRYTDRYGKTQTsNFPFlTTgDATLTSEGVAAfPdvnvdpatgkrnadlQVAFEGLYLPTAPQQpP---F 378
                 ........................************9999877777866377*********77****************************9944...6 PP

        ResB 363 l.slfpaledpalaleayrgdlgldagepqsvyaldtelfeqeqlnal..srygsplllq.....ldd.....fe.qrqasgLqvsrdpgknlvllgal 447
                 + s fp+ ++pa++l ayrg+lg+dag p svy+ld++++++++l+++  ++       +     ldd     f  ++ ++++ v++dpg  l+l++++
  KIR64646.1 379 TrSEFPTERNPAVVLVAYRGNLGMDAGIPGSVYQLDQRQVSNGKLKQIgdRKLA-----VgekwtLDDgsvleFVgTQPYITISVRYDPGSALLLVSST 472
                 66*******************************************966433323.....22445688888877556*********************** PP

        ResB 448 llvlGlvlslyvrhrRvWvri............eae..........dggskvelaglanknkagfekef 494
                 +l++Gl+ +l+ ++rRvW+r+            e +          +g+s ve++gl +++ +gf++ef
  KIR64646.1 473 TLLIGLMGALFGKRRRVWFRVtpagtppatgatE-TaadpaggsptAGSSLVEAGGLPRTDYPGFADEF 540
                 *********************7777777666651.055666777779*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3716.20
//
Query:       KIR64647.1  [L=329]
Description: cytochrome C biogenesis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-42  145.4  17.0    3.2e-42  144.7  17.0    1.3  1  Cytochrom_C_asm  Cytochrome C assembly protein
  ------ inclusion threshold ------
      0.044   13.9   1.7       0.11   12.5   1.7    1.6  1  Vma12            Endoplasmic reticulum-based factor for assem


Domain annotation for each model (and alignments):
>> Cytochrom_C_asm  Cytochrome C assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.7  17.0   3.5e-46   3.2e-42       1     214 []     113     323 ..     113     323 .. 0.90

  Alignments for each domain:
  == domain 1  score: 144.7 bits;  conditional E-value: 3.5e-46
  Cytochrom_C_asm   1 lsnleesllllawilsllgllleylarklnlsllaavaliaalillgfalflllaelqesadlnpalqspilmiHvplallsYatliigallsi 94 
                      ++n++e +l +++i +  +l + +  +   l+ l+ ++ +++++ll+fa +   + + e  +l+pal+s+++++Hv+++ +s +++++g++ +i
       KIR64647.1 113 WGNMYEFVLTVSFIGTAAWLAVLW--KRPSLRRLGLFLTLVMVLLLAFAEL---KLYVEVVPLTPALNSYWFVVHVSTISFSSGIFLLGVVPAI 201
                      89*************999999944..4435666666666666666666666...9999999********************************* PP

  Cytochrom_C_asm  95 alliierql...kkkkklklsanlkllkqldrlsyriiliGfvlltigiilGsvWaeeaWGsywsWDpketaslitWlvfaallhsriekgwrg 185
                      a+l+ +      k+++  +l ++l+    l+rl++++  ++f++ t+++i+G++Wae aWG  w WDpket+++i+W+v+a++lh+r++ ++r 
       KIR64647.1 202 AFLMRNG-YeqgKRSFPYTLAKRLPAAAGLERLTFSLHAFAFPVFTFAVIAGAIWAEAAWGRPWGWDPKETWAFISWVVYAGYLHARATPSVRR 294
                      ***6543.2356899999*********************************************************************999**** PP

  Cytochrom_C_asm 186 kkaailailgflllllayfgvrllgeglh 214
                        a++lai+gfl++l+  fgv++   glh
       KIR64647.1 295 NVATWLAIVGFLTVLMNLFGVNFFFTGLH 323
                      ***********************999998 PP

>> Vma12  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.7   1.3e-05      0.11      82     130 ..     118     166 ..     113     169 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
       Vma12  82 NiliSvvavffavwialrsartpslpvrvllslvvallVgvAEvvvyak 130
                  ++++v + ++a w a+ + r+      ++l+lv+ ll ++AE+ +y++
  KIR64647.1 118 EFVLTVSFIGTAAWLAVLWKRPSLRRLGLFLTLVMVLLLAFAELKLYVE 166
                 699*****************99999999*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2649.71
//
Query:       KIR64648.1  [L=453]
Description: hypothetical protein TK50_03165 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-06   29.1   0.0      2e-06   28.5   0.0    1.4  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   1.1e-10     2e-06      34     204 .]     220     371 ..     188     371 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1.1e-10
                  ESEEEEESTSSSSS...HHHHHHHHHHHHHHHHTSEEEEEC-TTSCHHH.HHHHHHHHHHHH.HHHHEHHHCEEETSEEEEEETTE.EEEEEEESECE CS
  Metallophos  34 pdlvllaGDlvdrg...dlekellellaalvkypipvylllGNHegfee.ellnkygylgif.sepwrsdaevfnnlplaslgsgs.lkvlllhGgsp 125
                  p  v+  GDl+d g   +l +++   + ++   +++  ++lGNH+ +   + ++ ++y+g   ++++ +++    ++ +++  +++  kv  + +gs 
   KIR64648.1 220 PGTVMAGGDLTDSGtadQLANCYDPTWGQF---KDRTKPILGNHD-YLTaNAKPTFDYFGPVlPPGKGYYSFDQAGWHIVV-LNTNcSKVGGCQAGS- 311
                  5556667*******5554444333334444...4599********.66667777777777777555555544555566665.333355666666662. PP

                  EETHHHHHHHHHHHSCHHHHCCHHHHHHHHHHTTCSEEEEEESSESS.CSSSCSCCHHHHHHHHHHTTESEEEEESSSSE CS
  Metallophos 126 ellvsldklgslnleleapepgdewlkdlekrekadwvivlgHsply.rgsgylfgdealedllkkygvdlvisGHtHvy 204
                   +                    + wl+ + +  +++ +++  H+pl  +g+  + + + l   l++ g+ +vi GH H+y
   KIR64648.1 312 AQ--------------------ERWLRADLAAHPTRCTLAQYHHPLFsSGGRESSNVRPLFQALYDAGAEIVINGHNHQY 371
                  22....................799999*******************433333333333337789999**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3588.10
//
Query:       KIR64649.1  [L=94]
Description: hypothetical protein TK50_03175 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 643.52
//
Query:       KIR64650.1  [L=262]
Description: hypothetical protein TK50_03180 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-12   47.5   0.6      2e-11   44.1   0.0    2.7  2  HTH_31          Helix-turn-helix domain
    3.8e-08   33.3   0.0    9.5e-08   32.0   0.0    1.7  1  HTH_3           Helix-turn-helix
    0.00032   20.7   0.0    0.00062   19.7   0.0    1.5  1  HTH_19          Helix-turn-helix domain
      0.001   18.5   0.0     0.0023   17.4   0.0    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.018   15.5   0.0      0.034   14.6   0.0    1.4  1  HTH_26          Cro/C1-type HTH DNA-binding domain
      0.021   14.7   0.0      0.067   13.0   0.0    1.9  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
      0.026   14.8   0.0       0.31   11.3   0.0    2.2  2  CobA_CobO_BtuR  ATP:corrinoid adenosyltransferase BtuR/CobO/C
      0.075   12.8   0.0       0.15   11.8   0.0    1.4  1  HTH_38          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   8.9e-15     2e-11       4      58 ..      10      63 ..       8      68 .. 0.94
   2 ?    0.5   0.2      0.35   7.7e+02      27      42 ..      74      88 ..      64     126 .. 0.67

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 8.9e-15
      HTH_31  4 alLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldp 58
                ++Lr++R++++++qe++A+++++s+st+  +E+G+r  p+p+++e +  al++ +
  KIR64650.1 10 DELRHMRAARRMTQEDLAKAVNYSPSTVAMVETGAR-KPPPDFWELVDVALDTGG 63
                68**********************************.6*******9999999876 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.35
      HTH_31 27 sestlsrlEqGrrgrp 42
                s+ +++ +E  +r+  
  KIR64650.1 74 SPQWMREWEANERQ-A 88
                78899999988875.3 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   4.2e-11   9.5e-08       1      44 [.      12      55 ..      12      63 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 4.2e-11
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkkl 44
                l+ +R ++ ++qe+LA++++ s+st+++ E G r+P ++  +++
  KIR64650.1 12 LRHMRAARRMTQEDLAKAVNYSPSTVAMVETGARKPPPDFWELV 55
                678999******************************99977665 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.8e-07   0.00062       4      49 ..      12      58 ..       9      63 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.8e-07
      HTH_19  4 LkeaReelgltqeelaerlgisrskisaiEngkkdvps..aelllkia 49
                L+ +R  + +tqe+la+ +  s+s  ++ E+g + +p+   ++l ++a
  KIR64650.1 12 LRHMRAARRMTQEDLAKAVNYSPSTVAMVETGAR-KPPpdFWELVDVA 58
                8999****************************55.4542366666665 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     1e-06    0.0023       9      34 ..      12      37 ..       4      38 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1e-06
      HTH_24  9 LelLqknprisqreLAerlglSpstv 34
                L+ +++  r++q +LA++++ Spstv
  KIR64650.1 12 LRHMRAARRMTQEDLAKAVNYSPSTV 37
                677788899****************9 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.5e-05     0.034       2      28 ..      12      38 ..      11      47 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.5e-05
      HTH_26  2 LrelmadrgitkseLargtgisaatls 28
                Lr++ a+r++t+ +La++++ s +t++
  KIR64650.1 12 LRHMRAARRMTQEDLAKAVNYSPSTVA 38
                9************************97 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     3e-05     0.067       9      35 ..      12      38 ..       6      39 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3e-05
  HTH_AsnC-type  9 LeaLqedaRisyaeLAervGlSestvl 35
                   L+++++  R++ ++LA++v+ S+stv+
     KIR64650.1 12 LRHMRAARRMTQEDLAKAVNYSPSTVA 38
                   66777889*****************97 PP

>> CobA_CobO_BtuR  ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00014      0.31     100     149 ..       7      57 ..       2      61 .. 0.93
   2 ?    0.8   0.0      0.23   5.2e+02     111     142 ..     116     146 ..     109     159 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
  CobA_CobO_BtuR 100 vvlDEinyalklglldeeevlellkkkpeklelvlTG.rnapeelleaADl 149
                     v++DE+ ++ +   +++e++ ++++  p+++ +v TG r++p+++ e+ D+
      KIR64650.1   7 VLIDELRHMRAARRMTQEDLAKAVNYSPSTVAMVETGaRKPPPDFWELVDV 57 
                     678**********************99**********999****9999997 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.23
  CobA_CobO_BtuR 111 lglldeeevlellkkkpeklelvlTGrnapee 142
                     +gl+de ev + ++++    + vlTG ++p+ 
      KIR64650.1 116 VGLFDEPEVEQRVETRL-ARQAVLTGERPPQL 146
                     68899999999999854.567899**887764 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.9e-05      0.15      15      37 ..      14      37 ..       9      38 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
      HTH_38 15 rlla.eGlslreIArrLgrspsTI 37
                +++a + +++ + A+ +++spsT+
  KIR64650.1 14 HMRAaRRMTQEDLAKAVNYSPSTV 37
                5664156****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1898.83
//
Query:       KIR64651.1  [L=62]
Description: hypothetical protein TK50_03185 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-22   79.7   1.1    1.4e-22   79.5   1.1    1.0  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   1.1   7.5e-27   1.4e-22       1      53 [.       6      59 ..       6      60 .. 0.89

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 7.5e-27
      DUF397  1 atWrKSsySgggggnCVEvaalpda......vavRDSkdpdgpvLtftpaewaaFlagv 53
                a+Wr S++S+ +ggnCVEv     a      v+vRDSkd+dg+vLtf pa+w+aF+a +
  KIR64651.1  6 ARWRTSTRSSTNGGNCVEV-----AdnlsgvVGVRDSKDRDGGVLTFAPAAWRAFVALA 59
                69*****************.....444455799***********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 415.50
//
Query:       KIR64652.1  [L=486]
Description: hypothetical protein TK50_03195 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.7e-156  519.7   0.0   5.3e-156  519.6   0.0    1.0  1  UbiD      3-octaprenyl-4-hydroxybenzoate carboxy-lyase


Domain annotation for each model (and alignments):
>> UbiD  3-octaprenyl-4-hydroxybenzoate carboxy-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  519.6   0.0    3e-160  5.3e-156       1     404 [.      15     428 ..      15     430 .. 0.97

  Alignments for each domain:
  == domain 1  score: 519.6 bits;  conditional E-value: 3e-160
                 HHHCCCTTSEEEEESEB-TBTHHHHHHHHHHHHT--EEEEEEBTTB.TT-EEEE-TTS-HCHHHHHHTS-GHHHHHHHHHHHHHS..-........... CS
        UbiD   1 lealekagelvrikeevdpelEiaeiarrvleeggpallFenvkgkgskfpvltnlfgtrervalalglssleeileklaellepkpp........... 88 
                 l+ale+agel+r++++vdp lEi+ei+ r+++eggpallFe++++  ++ pv++nlfgt++r+a+alg++sl+ei++++ +l++p+ p           
  KIR64652.1  15 LAALERAGELRRVRVPVDPTLEISEIVTRTVREGGPALLFERPTR--GELPVAINLFGTEKRMAMALGVDSLDEIGARIGALIKPELPvgwsgireglg 111
                 679****************************************64..58***********************************99989********** PP

                 .......---EE--GCG-GGGSEEECCCCC--HHHS---BSSTTSSS-EEECEEEEEE-TTTT-EEEEEEEEEEEETTEEEE--TTTHCHHHHHHHHHH CS
        UbiD  89 .......ippkvvesekapcqeevvlegddvdLskLPvltlwpgDgGpyitlglvitrdpetgkrnlgiyRmqvldknklglhwqihkggaehlrkakk 180
                        +pp++v  ++apcq++v  +gddvdL +LP l++wpgDgG + + gl+ t++petgkrnlg yR+q +++n+lg+hwqihk++  h++ a++
  KIR64652.1 112 kvmqlksVPPRKV--KTAPCQQVV-YSGDDVDLGRLPGLQVWPGDGGIFHNYGLTHTKHPETGKRNLGLYRLQQHSRNTLGMHWQIHKDSTAHHAVAER 207
                 *************..57****666.68************************************************************************ PP

                 CCT--EEEEEEES--HHHHHHCTS--TTT-TCHHHHHHHHTS--EEEE-SSSSSEEETT-SEEEEEEEECCEEEECTTTC-TTSCEEC--CCEEEEEEE CS
        UbiD 181 kggeplpvavaiGvdPaltlaAvaplPeglsElefaGalrgepvelvkcetvdlevpadAEivleGeidpgetapEGPfgdhtGyysevrdefpvfkVt 279
                  g ++lpvavaiG+dP++ +aA+aplP +++E++faG+lrge+ve+v+c tv+l+vpa+A ivleG+++pge+ pEGPfgdhtG+y ++ ++fpv++++
  KIR64652.1 208 LG-QRLPVAVAIGCDPVVSYAASAPLPSDIDEYLFAGFLRGERVEMVDCLTVPLQVPAHAQIVLEGYLEPGERLPEGPFGDHTGFY-TPVEPFPVLHIE 304
                 **.9**********************************************************************************.55577******* PP

                 EEEE-TT-EEEE-SSSCCSHHHHCHHHHHHHHHHHHHHCCSTTEEEEEE-GGGTTTCEEEEECHHHTCCHHHHHHHHHHCCTTGGC-SEEEEEEETTS- CS
        UbiD 280 aithRkdpiypttvvgkppeedallgkalealflpllkkqvpevkdvhlpeeggfhllavvsikkrypghakkvmealwalkqqlsltKlvivvDedvd 378
                 ++t+ +d++y+++v+ kpp+ed+ lgka+e++f pllk  +p+++d+ lp++g+fh++a+vsi+kryp+ha+kvm+a+w+++  +sltKl+++vDed+d
  KIR64652.1 305 TMTMQRDAVYHSIVTSKPPQEDHGLGKATERIFQPLLKLLIPDIVDYDLPAAGVFHNCAIVSIRKRYPKHAQKVMNAIWGAHL-MSLTKLIVIVDEDCD 402
                 *********************************************************************************99.*************** PP

                 TTSHHHHHHHHHHC--CCCCEEEECC CS
        UbiD 379 vrdlkevlwaiatrvdpdrDlviieg 404
                 v+d+ ev+ + + +vd +rDl+++eg
  KIR64652.1 403 VHDYHEVAFRAFGNVDYARDLLLTEG 428
                 **********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3253.23
//
Query:       KIR64653.1  [L=303]
Description: prenyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-49  169.0  31.8    1.5e-49  168.6  31.8    1.1  1  UbiA             UbiA prenyltransferase family
  ------ inclusion threshold ------
        3.6    7.4  12.2       0.66    9.7   2.5    3.0  2  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.6  31.8   1.6e-53   1.5e-49       5     250 ..      37     279 ..      29     288 .. 0.94

  Alignments for each domain:
  == domain 1  score: 168.6 bits;  conditional E-value: 1.6e-53
        UbiA   5 alvglalaaggspdlllllllllgtllaaaaanalNdyfDreiDadmertpnRPlvsGrispkealifaivllilgllllalllnpltallgllallly 103
                 al  ++   gg + +l lll++++++ a+++a+a N+++Dr iDa+++rt+ R lv+G++s+++a++ a v l++ l+ + +llnpl+++l+ la++ +
  KIR64653.1  37 ALT-AMQVDGGRVRWLDLLLITVAMVGARTFAMAANRILDRRIDARNPRTAARELVTGAVSVRTAWTGAGVALVVFLAAA-ALLNPLCLALAPLAVVPL 133
                 333.444569999*******************************************************************.****************** PP

        UbiA 104 vvYtglrlKrrtllgtvvggiafglppllgwaavtgsl..sllalllalavflltwaialandlrdregDrkagiktlpvvlGrkaarillalllavll 200
                 vvY+  + Kr+t +++ ++++a +++p+++w avtg++  s++a+ll++av+l++ +++l+++++d e Dr++g+++ p+++G + a+  ++++ +v++
  KIR64653.1 134 VVYP--YGKRFTNWPHAILAVAQAVGPVGAWLAVTGTFagSWPAFLLGAAVGLWIGGFDLIYACQDAEVDREIGVHSVPARYGLRFALHASTVAHVVTF 230
                 ****..************************************************************************************888888888 PP

        UbiA 201 lallllllalllllylllalllaalallraarlvrrrdakkaakfflfls 250
                 +++++++++   +++++++l+l a+a+ +++ +v   d +k +++f f +
  KIR64653.1 231 ALFVWFGALVGFGWPWWIGLALTAAAFGYQHLVVSPTDLSKVNRAF-FTA 279
                 88889***************************************99.544 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.5   7.4e-05      0.66       7      54 ..      89     140 ..      84     149 .. 0.74
   2 ?    1.5   2.6     0.028   2.5e+02      10      42 ..     150     182 ..     143     189 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 7.4e-05
  Phage_holin_2_4   7 eala.aagnkatggGavvsfaGflasselialvGlavA...liGlLvnWyYk 54 
                      e+++ a++ +++  Ga+v+++ fla++ l+  + la+A   ++ l+v  y k
       KIR64653.1  89 ELVTgAVSVRTAWTGAGVALVVFLAAAALLNPLCLALAplaVVPLVVYPYGK 140
                      555449*********************9999888876521155555555555 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.028
  Phage_holin_2_4  10 aaagnkatggGavvsfaGflasselialvGlav 42 
                       a+++    +Ga  ++ G  a s  + l+G+av
       KIR64653.1 150 LAVAQAVGPVGAWLAVTGTFAGSWPAFLLGAAV 182
                      344444445555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2073.48
//
Query:       KIR64654.1  [L=209]
Description: aromatic acid decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-15   56.8   0.0    2.5e-15   56.6   0.0    1.1  1  Flavoprotein  Flavoprotein


Domain annotation for each model (and alignments):
>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   1.4e-19   2.5e-15       3     155 ..       5     183 ..       3     190 .. 0.77

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 1.4e-19
                   EEEEE-SSCGGGCHHHHHHHHHHTTEEEEEEESCHHHHCCHHG.GS.................TCSSHHHHHHCT...................... CS
  Flavoprotein   3 illgiTGsvaaikalellekLkkegievqvvltkaAkkfiske.klklaa.............redpilhielrr...................... 63 
                   +++g++G++++ +a+ +++ L ++g  v++v+++aA+ +i +e      a              +         r                      
    KIR64654.1   5 WVVGVSGASGTPYAAAVVRGLLDAGEPVDLVVSRAARLTILDEtGR---AfrdghwaedlaawLG---------Rdlgdadvrhwpagdlaagpssg 89 
                   79***************************************88322...1334566666666633.........03333444447777788899999 PP

                   ..TESEEEEEEEEHHHHHHHHTT--SSHHHHHHHT..HCCTTEEEEE.--HHCCTCSTCHHHHHHH...H.T................GHHHHHHHH CS
  Flavoprotein  64 ..wadllviaPasantlakianGiadnlltlilra..takkpiliaPamnpamyenpqtlknlekl...e.egvtvikPsegdigkgkmaeieeivg 152
                     ++ ++ ++Pas    a ia G++++ll   + +  +++ p++++P       e p+t  +le l   +  g +v+  s g +g g+ a+ +++v+
    KIR64654.1  90 syRVRGMAVVPASTAACAGIAIGLSKDLLQRAAEVnlKERRPVVVVP------RETPVTRSHLEHLialHdAGAVVLPASPGFYGAGASASAQQLVD 180
                   99***************************88886667899*******......77777777777776544245555555559999999888888887 PP

                   HHC CS
  Flavoprotein 153 kil 155
                    + 
    KIR64654.1 181 FVA 183
                   765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1594.61
//
Query:       KIR64655.1  [L=88]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-12   45.1   0.0      1e-11   44.8   0.0    1.1  1  HTH_17    Helix-turn-helix domain
    6.5e-07   29.0   0.0      9e-07   28.6   0.0    1.2  1  MerR      MerR family regulatory protein
    4.3e-05   23.5   0.0    5.2e-05   23.2   0.0    1.1  1  MerR_1    MerR HTH family regulatory protein
  ------ inclusion threshold ------
      0.088   12.8   0.2       0.34   11.0   0.1    2.0  2  HTH_29    Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   2.3e-15     1e-11       1      49 [.       7      56 ..       7      58 .. 0.95

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 2.3e-15
      HTH_17  1 lltveEaAelLgvsrstvyrlirrgelpaak.iGrrwriprsdleewlek 49
                llt+ E+A+l++v ++tv r++ +g++   +  G+++r+++s++ + le+
  KIR64655.1  7 LLTPGEVAALFRVDPKTVTRWAAAGRIGSIRtPGGHRRFRESEVRALLEG 56
                79*************************88899****************97 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0     2e-10     9e-07       1      38 []       9      45 ..       9      45 .. 0.97

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 2e-10
                EHHHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSSEEE CS
        MerR  1 tIgevAeltGvsprtLRyYEreGLipppeRtegGyRlY 38
                t gevA l+ v p+t+ ++   G i  ++Rt+gG+R++
  KIR64655.1  9 TPGEVAALFRVDPKTVTRWAAAGRI-GSIRTPGGHRRF 45
                78***********************.99*********8 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.2e-08   5.2e-05       2      47 ..       9      54 ..       8      66 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.2e-08
                EHHHHHHHHTS-HHHHHHHHHHTT-S-EE-TTS-EEEEHHHHHHHH CS
      MerR_1  2 sigevakilgvtthtlrywekegllkpkrteggrryYtdedierLk 47
                + geva ++ v ++t+  w   g +   rt gg+r++++++++ L 
  KIR64655.1  9 TPGEVAALFRVDPKTVTRWAAAGRIGSIRTPGGHRRFRESEVRALL 54
                679***************************************9986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   7.6e-05      0.34      14      44 ..       9      36 ..       1      52 [. 0.72
   2 ?    1.0   0.1     0.097   4.4e+02      34      47 ..      43      56 ..      42      66 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.6e-05
      HTH_29 14 tvsqiAkllglsrrtvyrwlkrfeegGlaal 44
                t+ ++A+l +++++tv rw  +   g+++++
  KIR64655.1  9 TPGEVAALFRVDPKTVTRWAAA---GRIGSI 36
                7889***************987...555555 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.097
      HTH_29 34 krfeegGlaalldr 47
                +rf+e +++all++
  KIR64655.1 43 RRFRESEVRALLEG 56
                79999999999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 599.36
//
Query:       KIR64656.1  [L=152]
Description: AsnC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-17   61.9   0.1    6.1e-17   61.2   0.1    1.4  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    9.8e-16   57.1   0.1    2.7e-15   55.6   0.0    1.7  2  HTH_24          Winged helix-turn-helix DNA-binding
    1.9e-15   56.5   0.0    3.2e-15   55.9   0.0    1.3  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    5.5e-05   23.0   0.4    0.00015   21.6   0.2    1.8  2  MarR_2          MarR family
    0.00033   20.4   0.4    0.00033   20.4   0.4    2.2  3  HTH_IclR        IclR helix-turn-helix domain
     0.0014   18.6   0.2      0.003   17.6   0.2    1.5  1  HTH_20          Helix-turn-helix domain
      0.005   16.7   0.0      0.021   14.8   0.0    1.8  2  HTH_11          HTH domain
  ------ inclusion threshold ------
      0.037   14.2   1.0        0.1   12.7   0.2    2.1  3  DprA_WH         DprA winged helix domain
      0.038   13.8   0.0      0.075   12.8   0.0    1.4  1  LexA_DNA_bind   LexA DNA binding domain
       0.04   13.9   0.0      0.075   13.0   0.0    1.4  1  MarR            MarR family
      0.067   12.9   0.0       0.54   10.0   0.0    2.2  2  Sigma70_r4_2    Sigma-70, region 4
      0.067   13.2   0.0       0.13   12.2   0.0    1.4  1  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.071   12.9   0.0       0.12   12.2   0.0    1.3  1  DUF501          Protein of unknown function (DUF501)
      0.074   13.3   0.0       0.14   12.4   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.089   13.2   0.0        0.2   12.0   0.0    1.5  1  Rrf2            Transcriptional regulator
      0.095   12.6   0.1       0.19   11.6   0.1    1.4  1  TrmB            Sugar-specific transcriptional regulator TrmB
       0.11   12.7   0.0       0.14   12.4   0.0    1.3  1  EF1_GNE         EF-1 guanine nucleotide exchange domain
       0.12   12.4   0.4       0.31   11.0   0.1    1.8  2  HTH_1           Bacterial regulatory helix-turn-helix protein
       0.17   11.7   0.0       0.37   10.6   0.0    1.5  1  HTH_10          HTH DNA binding domain
       0.19   12.2   0.0       0.35   11.4   0.0    1.4  1  PCI             PCI domain


Domain annotation for each model (and alignments):
>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.1   6.8e-20   6.1e-17       1      42 []       1      42 [.       1      42 [. 0.99

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 6.8e-20
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   +D+iD+ ++e+Lq +aR+syaeLA++vGlS+++v++Rv +Le
     KIR64656.1  1 MDAIDLSLVELLQGNARLSYAELARQVGLSAPAVHERVGKLE 42
                   9****************************************8 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0     3e-18   2.7e-15       1      48 []       1      48 [.       1      48 [. 0.98
   2 ?   -1.8   0.0       2.6   2.3e+03      24      32 ..     129     137 ..     116     138 .. 0.63

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 3e-18
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                +d +d+ + elLq n+r+s++eLA+++glS ++v++r+ +Le++G+++
  KIR64656.1  1 MDAIDLSLVELLQGNARLSYAELARQVGLSAPAVHERVGKLESSGVVR 48
                79********************************************97 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.6
      HTH_24  24 AerlglSps 32 
                 + r+g+ +s
  KIR64656.1 129 STRTGIALS 137
                 456666666 PP

>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   3.5e-18   3.2e-15       7      75 .]      74     138 ..      69     138 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 3.5e-18
                     GGGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEEE CS
  AsnC_trans_reg   7 pghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivlet 75 
                     +g+   ++++ ea++++pe+++cy ++G  ++llk++v  +++le+++++ l++ pgva+t+t i+l+t
      KIR64656.1  74 GGD---TDDVLEAFRRMPEIESCYFMAGVESFLLKARVGTIAELEQLIVR-LNRTPGVASTRTGIALST 138
                     455...99******************************************.***************986 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.2   1.7e-07   0.00015      15      53 ..      12      49 ..       4      56 .. 0.83
   2 ?   -1.4   0.0       2.5   2.3e+03      25      28 ..     109     112 ..      79     132 .. 0.54

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.7e-07
                HCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2 15 grrpgrdltvgelarrlglsksavsrilkrLvaaGLver 53
                  +   +l+ +elar  gls +av+ ++ +L++ G v+ 
  KIR64656.1 12 LQGNA-RLSYAELARQVGLSAPAVHERVGKLESSGVVRA 49
                44443.499***************************985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.5
                 HHHH CS
      MarR_2  25 gela 28 
                 g +a
  KIR64656.1 109 GTIA 112
                 3333 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.4   3.7e-07   0.00033      10      49 ..      10      48 ..       6      49 .. 0.86
   2 ?   -1.4   0.0       2.4   2.2e+03       7      16 ..      79      88 ..      79      90 .. 0.84
   3 ?   -2.9   0.1       7.1   6.4e+03      25      34 ..     129     138 ..     128     138 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.7e-07
                CT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR 10 dalaeapqeltlselArrtglpkStvhRlLqtLvelGyve 49
                ++l   ++ l+ +elAr+ gl+ ++vh  +  L+  G v+
  KIR64656.1 10 ELLQGNAR-LSYAELARQVGLSAPAVHERVGKLESSGVVR 48
                55655555.9**************************9997 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.4
                HHHCT-CTTB CS
    HTH_IclR  7 aiLdalaeap 16
                ++L+a+++ p
  KIR64656.1 79 DVLEAFRRMP 88
                69****9977 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 7.1
                 HHHHTS-HHH CS
    HTH_IclR  25 ArrtglpkSt 34 
                 + rtg++ St
  KIR64656.1 129 STRTGIALST 138
                 5689999998 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   3.3e-06     0.003      16      56 ..       9      49 ..       4      53 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.3e-06
                HHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 16 lraLaraegltaselaerldlskntlsyHLrvLeeagLvev 56
                  +L +++ l+ +ela++++ls   ++ ++ +Le+ g v+ 
  KIR64656.1  9 VELLQGNARLSYAELARQVGLSAPAVHERVGKLESSGVVRA 49
                567789999*****************************986 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.3e-05     0.021       5      44 ..       8      46 ..       6      58 .. 0.86
   2 ?   -1.0   0.0         2   1.8e+03      36      51 ..     111     126 ..     108     129 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.3e-05
      HTH_11  5 ilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                ++elL + +  +s +eLA++ ++S  +v+ ++ +Le++gv
  KIR64656.1  8 LVELL-QGNARLSYAELARQVGLSAPAVHERVGKLESSGV 46
                66777.88888***************************93 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2
      HTH_11  36 IkaLeelgvpIesepg 51 
                 I++Le l v++  +pg
  KIR64656.1 111 IAELEQLIVRLNRTPG 126
                 8888888888777776 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   0.00011       0.1      17      57 ..       8      49 ..       2      51 .. 0.85
   2 ?   -2.4   0.0       6.2   5.6e+03      31      43 ..      69      81 ..      62      83 .. 0.77
   3 ?   -2.0   0.0       4.6   4.1e+03      28      35 ..     114     121 ..     111     130 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
     DprA_WH 17 vLaaL.gpePvhvDqLvrrtglpaaevsaaLleLELaGlver 57
                ++++L g++ ++  +L+r++gl+a +v      LE +G v++
  KIR64656.1  8 LVELLqGNARLSYAELARQVGLSAPAVHERVGKLESSGVVRA 49
                56677456788999*********************9999985 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.2
     DprA_WH 31 Lvrrtglpaaevs 43
                +v+++g +++ v+
  KIR64656.1 69 IVEDSGGDTDDVL 81
                6788888887776 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4.6
     DprA_WH  28 vDqLvrrt 35 
                 ++qL+ r+
  KIR64656.1 114 LEQLIVRL 121
                 34444444 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.4e-05     0.075      27      58 ..      19      49 ..      18      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.4e-05
                   -HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE- CS
  LexA_DNA_bind 27 sireiaralglkSpsaveehLkaLerKGyier 58
                   s +e+ar++gl+ + av+e+  +Le  G+++ 
     KIR64656.1 19 SYAELARQVGLS-APAVHERVGKLESSGVVRA 49
                   789********8.889*************985 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.4e-05     0.075      16      49 ..      14      49 ..       6      53 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.4e-05
                TTEEHH..HHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        MarR 16 gplsvs..eLakklgvskstvtrvldrLekkGlieR 49
                g++++s  eLa+++g+s ++v + + +Le  G ++ 
  KIR64656.1 14 GNARLSyaELARQVGLSAPAVHERVGKLESSGVVRA 49
                55555555************************9985 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0006      0.54      27      46 ..      18      37 ..      16      40 .. 0.89
   2 ?   -0.0   0.0       0.8   7.2e+02       3      16 ..      79      92 ..      77      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0006
                  --HHHHHHHHT--HHHHHHH CS
  Sigma70_r4_2 27 lsykEIAellgisegtVksr 46
                  lsy+E A++ g+s  +V  r
    KIR64656.1 18 LSYAELARQVGLSAPAVHER 37
                  8*************999765 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.8
                  HHHHHHTTS-HHHH CS
  Sigma70_r4_2  3 alrealaeLperqr 16
                   ++ea +++pe+++
    KIR64656.1 79 DVLEAFRRMPEIES 92
                  68999******997 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00015      0.13      20      54 ..      16      51 ..       5      55 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
                EEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET CS
   HTH_Crp_2 20 lpltqeelAsmlGltretvsrilseLkreglis.rg 54
                 +l+ +elA+ +Gl+   v    ++L+  g+++  +
  KIR64656.1 16 ARLSYAELARQVGLSAPAVHERVGKLESSGVVRaYR 51
                589****************************99433 PP

>> DUF501  Protein of unknown function (DUF501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00013      0.12      34      60 ..      29      55 ..      23      59 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
      DUF501 34 LtcpelvkavsrLEaeglvkaleekla 60
                L+ p + ++v++LE++g+v+a++++++
  KIR64656.1 29 LSAPAVHERVGKLESSGVVRAYRAEVE 55
                899*******************99986 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00015      0.14      23      53 ..      18      48 ..      10      52 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00015
                    B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 23 vktkdlaerLnvspssVsemlkkLekdGyve 53
                     + ++la+  + s++ V e + kLe+ G v 
      KIR64656.1 18 LSYAELARQVGLSAPAVHERVGKLESSGVVR 48
                    56789***********************885 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00022       0.2      19      59 ..      11      51 ..       5      52 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00022
                HSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
        Rrf2 19 keeeeepvsseeiaerqnispsylekilakLrkaglvksvr 59
                + +++  +s +e+a+++++s++ +   + kL+ +g+v++ r
  KIR64656.1 11 LLQGNARLSYAELARQVGLSAPAVHERVGKLESSGVVRAYR 51
                45666679*****************************9876 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00022      0.19      19      54 ..      14      49 ..       7      57 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00022
                HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEE CS
        TrmB 19 klgpatadeiaeelgvprskvYevLrsLedkGlVer 54
                 + +++  e+a+++g++ + v e + +Le+ G+V+ 
  KIR64656.1 14 GNARLSYAELARQVGLSAPAVHERVGKLESSGVVRA 49
                56677889**************************86 PP

>> EF1_GNE  EF-1 guanine nucleotide exchange domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00016      0.14      18      82 ..      34      93 ..      30     121 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00016
                HHHHHHH.HS-TSEE--.--EEE-SSS-EEEEEEEEESSS-GGGGHHHHHHTTS-S.....SEEE CS
     EF1_GNE 18 lekkvksikleglvwgeasklepiafGlkkLqiscvieddkvstdeleekieeiegeledlVqsv 82
                + ++v +++  g+v     ++ep a Gl    +  ++ed+ + td++ e+++++ +     ++s+
  KIR64656.1 34 VHERVGKLESSGVVRAYRAEVEPEAIGLGVTALIGIVEDSGGDTDDVLEAFRRMPE-----IESC 93
                567788888888555556777777777777777889****************8887.....5554 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00034      0.31      20      39 ..      24      43 ..      15      45 .. 0.90
   2 ?   -1.8   0.0       3.6   3.2e+03      44      51 ..     116     123 ..     110     133 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00034
                HHHHTS-HHHHHHHHHHHHH CS
       HTH_1 20 AeeLglsqpavsrqikrLEe 39
                A+++gls pav  ++ +LE+
  KIR64656.1 24 ARQVGLSAPAVHERVGKLES 43
                9******************7 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.6
                 -SEEESSS CS
       HTH_1  44 pLfeRtgr 51 
                 +L++R +r
  KIR64656.1 116 QLIVRLNR 123
                 44444333 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00041      0.37      23      49 ..      17      43 ..      15      44 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00041
      HTH_10 23 rvtlkeLAkelGIskstlsehLrkaes 49
                r + +eLA + G+s+++++e++ k es
  KIR64656.1 17 RLSYAELARQVGLSAPAVHERVGKLES 43
                67889***************9988776 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00039      0.35      47      93 ..       4      50 ..       1      54 [. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00039
                HHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEE CS
         PCI 47 rerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeirak 93
                +  +l ++ +   ++s+++la++++ls   v++ + kl ++g +ra+
  KIR64656.1  4 IDLSLVELLQGNARLSYAELARQVGLSAPAVHERVGKLESSGVVRAY 50
                6677889999*************************999888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 972.48
//
Query:       KIR64657.1  [L=363]
Description: cysteine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-46  156.6   0.0    1.1e-45  156.3   0.0    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.3   0.0   6.1e-50   1.1e-45      16     293 ..      39     322 ..      29     323 .. 0.88

  Alignments for each domain:
  == domain 1  score: 156.3 bits;  conditional E-value: 6.1e-50
                 TCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHH.HHTT..TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-EEEEECCHH CS
        PALP  16 lskelgvplflKlEslnptgSfKdRgaeyllar.lkeg..tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGaevvevggdy 111
                 l +e g++l+lK+Es +ptgS K R a +l+++ l +g   +++t+veassG ++++ A+ a++lGl+++ v+pa++spek+ +++  G ++++v++ +
  KIR64657.1  39 LPREWGIDLYLKDESVHPTGSLKHRLARSLFLYgLCNGwiGPGTTIVEASSGSTAVSEAYFARMLGLPFIAVMPASTSPEKITQIEFQGGRCHLVDD-P 136
                 45799*************************99999999**9******************************************************55.5 PP

                 HHHHHHHHHHHHHSTTCEE--TTT...SHHHHHHHHTHHHHHHHHTT....TTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCCS CS
        PALP 112 deavaaaaelaaegegaylvsqfd...nptviegygtiglEileqlg....gkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarslr 203
                    v  a+ la++  g ++ +qf      t + g + i+  i++ql     ++p ++vv++G+Gg+ a i+++ + rr  +++++v+pe ++a++ +++
  KIR64657.1 137 AKVVVEARWLAED-SGGHFMDQFTyaeRATDWRGNNNIAESIYAQLAlerhPVPAWIVVGAGTGGTSATIGRYTRFRRLPTKLCVVDPE-NSAFYPAWQ 233
                 5555555666666.**********999999*************99999999*************************88889*******9.999*****9 PP

                 ..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTC..EEEEEEE- CS
        PALP 204 agrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkeg..drvvvilt 293
                 a + + ++   + ++g++ +   +   + l + vd++v+v+d++ l+amr      g  v+ s++++l ++  + ag l+eg   +vv++++
  KIR64657.1 234 AADWSVCTGRGSRIEGIGRP---SVEASFLPAVVDRMVQVPDAASLAAMRAGSALLGRRVGGSTGTNLWGAFGLIAGMLAEGrtGSVVTLIC 322
                 ********************...3333445566888888*******************************9444444444443347777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2466.84
//
Query:       KIR64658.1  [L=216]
Description: hypothetical protein TK50_03230 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-43  145.9   0.0    1.4e-41  141.9   0.0    2.1  1  Glycolipid_bind  Putative glycolipid-binding


Domain annotation for each model (and alignments):
>> Glycolipid_bind  Putative glycolipid-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.9   0.0   7.8e-46   1.4e-41       2     178 .]       5     212 ..       4     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: 141.9 bits;  conditional E-value: 7.8e-46
                      .EEEE-EE--EEEEEE-S....SEEEEEEEEE-TTT--EEEEEEEE-TTS-EEEEEEEEEETTEEEEEEEEE-SSS-EEETT--B-GGGT.... CS
  Glycolipid_bind   2 vtWrrldgeglehlrleeseegiraegvvvgaeegealalsYeletdadwrtrrlsvkvataeeerslslerdeegeWlvdageerpdld.... 91 
                      ++W+r+d++g eh++++  ++g+ a+gvv++++  + ++++Y+l++ +dw+t+rl+v++++a+++rs++le    ++W+v+a +e+ dld    
       KIR64658.1   5 LFWARTDTAGSEHVVFDD-GAGLGAQGVVLAVDPIP-YTCRYRLTVGPDWATSRLEVEAEGAGWQRSVRLEPA-GDRWRVTA-AEQGDLDaalr 94 
                      78**************96.************99888.779*******************************54.667*****.*********** PP

                      ...................T--EEEEET-GGGGHHHHHHH---T.............T-EEEEEEEEEETTTT--EEEEEEEEEEET.TEEEEE CS
  Glycolipid_bind  92 ...................gcldvDlslsPftNtlpIrRlglae.............gesaeipvvyvslpdleveraeqrYtrleeesvyrye 153
                                         g++dvDl+ sP++Ntlp+rRlgla+             g++++i+v++v++p+l v +aeq Yt l + +++r++
       KIR64658.1  95 aaghpaaglpglddpdrlaGAVDVDLGGSPLFNTLPVRRLGLAPaatttsppgaaepGAAHRITVAWVQVPSLMVLPAEQVYTALGP-GRVRFA 187
                      *****************************************986222222221111144556*************************.****** PP

                      E-S-EEEEEE-TTS-EEEETTTEEE CS
  Glycolipid_bind 154 sedfsadLtvDedGlVldYpglarR 178
                      se+f+++L+vD  G Vl+Ypgla+R
       KIR64658.1 188 SETFTTELDVDPGGWVLRYPGLAER 212
                      ***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1766.17
//
Query:       KIR64659.1  [L=820]
Description: RNA helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-42  145.5   0.0    1.9e-42  145.0   0.0    1.2  1  DEAD        DEAD/DEAH box helicase
    1.3e-22   80.2   0.0    2.7e-22   79.2   0.0    1.5  1  Helicase_C  Helicase conserved C-terminal domain
    0.00063   19.8   0.0      0.001   19.1   0.0    1.3  1  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.0   0.0   3.1e-46   1.9e-42       1     175 [.     137     306 ..     137     307 .. 0.95

  Alignments for each domain:
  == domain 1  score: 145.0 bits;  conditional E-value: 3.1e-46
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS..TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet..kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng 97 
                 ++iQ++++p +l g+dvl++++TGsGKTlaf +pv+++++++   +  +p+al+++PtreLa q+ + l  ++k +++ ++  +ggv++++q+++l++g
  KIR64659.1 137 FPIQRATVPDALAGRDVLGRGQTGSGKTLAFGLPVIARLAKRnrARPLHPRALVLVPTRELAMQVNDALVPLGKAVGIFLKTAVGGVPYDRQIDALRRG 235
                 58*************************************9988778899**************************99888899**************** PP

                 CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 v+ivv+tpgrl dl+++g  +l++v++ VlDEad++ d+gf +++ ++l+++       ++ +q +++SATl  dv+ 
  KIR64659.1 236 VEIVVATPGRLGDLINRGVCHLDDVEVTVLDEADQMADMGFLPEVTELLAKT-------PAGSQRLLFSATLDGDVDS 306
                 ****************************************************.......44557********988875 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.0   4.5e-26   2.7e-22      14     111 .]     351     448 ..     341     448 .. 0.90

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 4.5e-26
                 TTTSEEEEEESSHHHHHHHHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSST CS
  Helicase_C  14 eeggkilifvntidrlekvklllekk..gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRa 110
                 ++ g++++f++t+  ++  +l+++    g+++  lhg  +q+ r ++l++f++g+  vL+atdva+rGi +++v+lV ++d+p+++++y +r+GRt+Ra
  KIR64659.1 351 ARSGRTMLFARTQLGVD--RLVEQLAavGVRAGGLHGGKTQRMRTKTLAEFREGRMSVLVATDVAARGIHVDGVSLVLHVDPPKDPKDYLHRAGRTARA 447
                 67899*********998..555333357**********************************************************************9 PP

                 T CS
  Helicase_C 111 g 111
                 g
  KIR64659.1 448 G 448
                 7 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.7e-07     0.001      32     168 ..     158     299 ..     151     302 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.7e-07
                 STTSTHHHHH.HHHHHHH-S.........-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--.......-SEEEEEHHHHHHTH... CS
      ResIII  32 aTGtGKTlva.aklierllkkgkee....kflflvprkslleqtleefkkflseayke....igkkvsgdkkkakekdstnkkilvttiqsldadseee 121
                  TG+GKTl   + +i+rl+k ++ +    ++l+lvp+++l  q  +++  + +    +    +g++  +++ +a    +   +i+v+t  +l   +   
  KIR64659.1 158 QTGSGKTLAFgLPVIARLAKRNRARplhpRALVLVPTRELAMQVNDALVPLGKAVGIFlktaVGGVPYDRQIDA---LRRGVEIVVATPGRLGDLI--- 250
                 6*********9*********988889*******************99855555444332221333333333333...5567777777777777777... PP

                 .....HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS CS
      ResIII 122 eeeseellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTAT 168
                   ++     d  +v + DEa  ++++    +++e+l k ++ + +l ++AT
  KIR64659.1 251 --NRGVCHLDDVEVTVLDEADQMADMgflPEVTELLAKTPAgSQRLLFSAT 299
                 ..5556666666677777777777763322333333333335666777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 5370.77
//
Query:       KIR64660.1  [L=494]
Description: glycoside hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-22   80.1   0.0      2e-22   79.2   0.0    1.4  1  NLPC_P60    NlpC/P60 family
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.022   14.7   0.0    1.4  1  Amidase_5   Bacteriophage peptidoglycan hydrolase
        0.5   10.4  15.6        1.4    9.0   7.3    2.2  2  TPR_MLP1_2  TPR/MLP1/MLP2-like protein
        0.6   10.2   6.3        5.9    7.0   0.0    2.2  2  ADIP        Afadin- and alpha -actinin-Binding
        5.2    6.3  15.0         13    5.0  15.0    1.6  1  DUF4407     Domain of unknown function (DUF4407)
        6.5    7.3  12.2        5.4    7.5   6.3    2.2  2  APG6_N      Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.0   6.6e-26     2e-22       1      91 [.     291     387 ..     291     401 .. 0.89

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 6.6e-26
                 T-BB-TT--BTTEB-HHHHHHHHHHTTT-.---SSHHHHCCCSEE..EEGGG--TTEEEEESG...TGGESEEEEEEETTEEEEEE..TTEEEEEET CS
    NLPC_P60   1 gkpYrwGGkspsgfDCsglvryafakagi.elprssgeqeaagkkkeiskselkrGDLvffkt...kkgisHvgiYlgngkmlhas..sekvsvssl 91 
                 g pY+w+ + p+ fDCsgl+ +a+++ag+ +lpr s++q+ a++++++s+s+l +GDL+ff++    ++i+Hv++Y+gngkm++++  +++v++s++
  KIR64660.1 291 GDPYVWAAEGPDAFDCSGLMWAAYRSAGYnQLPRVSRDQYYATRSRTVSRSALLPGDLLFFASgssWTTIHHVAMYIGNGKMVQSPttGQTVKISTV 387
                 78*************************6537*******************************98777899***************987777777765 PP

>> Amidase_5  Bacteriophage peptidoglycan hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   7.3e-06     0.022      23     115 ..     298     384 ..     294     398 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.3e-06
   Amidase_5  23 rlGPnsydcsssvyfaliaaGalsaGsavntetlfdslikngykeiaennakrGdifiwGvrGasaGagGhtglfidsesiihcnygangitv 115
                  +GP+++dcs  ++ a ++aG+ +   ++  ++       ++ + ++++    Gd++ +   G+s  +  h++++i +++++    +  ++ +
  KIR64660.1 298 AEGPDAFDCSGLMWAAYRSAGYNQLPRVSRDQYY-----ATRSRTVSRSALLPGDLLFF-ASGSSWTTIHHVAMYIGNGKMVQSPTTGQTVKI 384
                 58*******************9998877665553.....4677889999999***9876.579***************999987766666655 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.2    0.0031       9.4       8      43 ..     107     142 ..      93     153 .. 0.81
   2 ?    9.0   7.3   0.00045       1.4      54     126 ..     188     260 ..     184     262 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0031
  TPR_MLP1_2   8 eeikslkeekeeaeaklqklqedlekqaeiakeaqq 43 
                 +++  l++  ++aea+l+++ +dl++ ++ +++aq+
  KIR64660.1 107 DQLLGLRQTRTDAEAQLAAADRDLKAARDALARAQE 142
                 555667888889999999999999999999998886 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00045
  TPR_MLP1_2  54 edvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneqNklLhdQl 126
                 +++ el+++r+  + + +    + +++ s++ + ++ e+s++eq+++l k  ++  ++i +l+ q + L +Ql
  KIR64660.1 188 AAAGELTRARAAEQVAYQAWLAADTRVRSVRDQYAAVEKSLHEQEKKLLKLRKDNAAQIIELERQQEALEQQL 260
                 6778899999999999999999999*********************************************998 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.002       5.9      75     126 ..      94     145 ..      90     152 .. 0.87
   2 ?    3.4   3.8     0.024        71      74     120 ..     212     258 ..     173     262 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.002
        ADIP  75 kierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalq 126
                 +i   ++q+  l  +l  + ++ +++e++l+++++ lk  ++ l+r +  ++
  KIR64660.1  94 AIAAAEAQVGLLGDQLLGLRQTRTDAEAQLAAADRDLKAARDALARAQEGAD 145
                 67777888888999999999**************************998766 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.024
        ADIP  74 skierlktqleqlerelalvqakerqlekklktleqklknekeelqr 120
                 ++++++ +q+++ e+ l  +++k+ +l+k++++++  l +++e l+ 
  KIR64660.1 212 TRVRSVRDQYAAVEKSLHEQEKKLLKLRKDNAAQIIELERQQEALEQ 258
                 45666777777778888888888888888888887777777777654 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  15.0    0.0044        13     130     228 ..     105     262 ..      91     290 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0044
     DUF4407 130 a......ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk..............................gtgttgvaGkgpaake..... 187
                        l+++ +++eaq+aa+++ ++aa+++l+++++ a++ + g+                                  tt+ aG+ ++a++     
  KIR64660.1 105 LgdqllgLRQTRTDAEAQLAAADRDLKAARDALARAQEGADAAAAGALkaaaalppgefaedlhglnmlqqitrgeeaEGATTAAAGELTRARAaeqva 203
                 144566688899999999999999999999999999999999999999889999999999999999999888777776333445666666666655555 PP

     DUF4407 188 ....................kkaqldaaqaelaelkakldatarlaalraelaeleaerak 228
                                      ++ l +++++l +l+++  ++a++ +l+++++ le+++ +
  KIR64660.1 204 yqawlaadtrvrsvrdqyaaVEKSLHEQEKKLLKLRKD--NAAQIIELERQQEALEQQLGA 262
                 55555555554443333333333333333333333333..666666666666666666655 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.3     0.044   1.3e+02      60      96 ..      99     135 ..      89     154 .. 0.70
   2 ?    7.5   6.3    0.0018       5.4      52     126 ..     189     260 ..     163     263 .. 0.52

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.044
      APG6_N  60 ekeeeelleeLkelekereeleaelaaleeelealee 96 
                 e++   l  +L  l ++r + ea+laa+ + l+a  +
  KIR64660.1  99 EAQVGLLGDQLLGLRQTRTDAEAQLAAADRDLKAARD 135
                 5555556667777888888888888888777776554 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0018
      APG6_N  52 leeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqy 126
                 +  el + +++e+ + +   ++++  ++++++ aa    ++ l+e+e++ ++ +++ + + +ele ++++le q+
  KIR64660.1 189 AAGELTRARAAEQVAYQAWLAADTRVRSVRDQYAA---VEKSLHEQEKKLLKLRKDNAAQIIELERQQEALEQQL 260
                 44444444444444444444444444444443333...3444555555555555555556666666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1363  (0.0760221); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.46
# Mc/sec: 3247.80
//
Query:       KIR64661.1  [L=389]
Description: radical SAM protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.2e-12   46.0   0.0    1.2e-11   45.3   0.0    1.3  1  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   6.4e-16   1.2e-11       2     162 ..      61     229 ..      60     234 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 6.4e-16
                  EEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTC..CCTEEEEEEECSSCHG...... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx...... RF
  Radical_SAM   2 vvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekg.vkevilgggepllypdfvellerlakla..vpgiritvetngtlpd...... 90 
                  + t+ C+  C +C++ ++   e++++++ ++e ++++ke+ ++ + ++  i+ g +p+l ++++ +++r+ k a  + +++ +  t   + +      
   KIR64661.1  61 NLTNVCSASCAYCSFQRK-PGEKDAYTMRIDEAVRKAKEM-EDEQlTELHIVNGLHPTLPWRYYPKVLRELKAAlpKVNLKAFTATEVQWFEkisgls 156
                  57999************6.*********************.899988889999*******************99885666666666666666888888 PP

                  .HHHHHHHHHTT.-SEEEEEEBSSSHHHHHHHHT.CTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHH CS
                  .xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  91 .eeklerllelg.vdrvslgleaaddekvlklmn.rghtfeevlealeklreagikrvvdrivglpGendeelee 162
                   +e+l++l ++g       g+e++d e v++++      +e++ +  ++++++g+k + ++++ ++ e  +++++
   KIR64661.1 157 aDEILDELMDAGlESLTGGGAEIFDWE-VRQHIVdHACHWEDWSRIHRLAHSKGMK-TPSTMLYGHIEEPRHRVD 229
                  8***********545555678888888.9999999999******************.555555444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2542.31
//
Query:       KIR64662.1  [L=144]
Description: hypothetical protein TK50_03260 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1040.70
//
Query:       KIR64663.1  [L=88]
Description: hypothetical protein TK50_03265 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-15   55.6   3.8    5.2e-15   55.3   3.8    1.1  1  DUF4229   Protein of unknown function (DUF4229)
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.13   11.8   0.0    1.0  1  YIF1      YIF1


Domain annotation for each model (and alignments):
>> DUF4229  Protein of unknown function (DUF4229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   3.8   5.8e-19   5.2e-15       2      68 .]       6      66 ..       5      66 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 5.8e-19
     DUF4229  2 lYtlaRlaLfvvltavillvarliglpvpllvaallAlvvalplSmvllkklRdrataqvaerderR 68
                +Ytl R++Lfvv++a+++ v       +++++ ++lAl  +++lS++ll+++Rd+++ ++a ++erR
  KIR64663.1  6 KYTLGRIGLFVVVMAALWPVD------LNVFLKLMLALAFSAALSFFLLRSWRDEMAGEMAGAAERR 66
                8********************......9**************************************9 PP

>> YIF1  YIF1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.5e-05      0.13     166     215 ..      16      69 ..       6      78 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.5e-05
        YIF1 166 vtlllkll..lgeglvyylvllylvlalafFllrsLklvllpeas..etvkksq 215
                 v+++++l     +  + +++ l +++al+fFllrs +  +  e +  ++ ++++
  KIR64663.1  16 VVVMAALWpvDLNVFLKLMLALAFSAALSFFLLRSWRDEMAGEMAgaAERRRAE 69 
                 333433332234555888999999*************99999988542222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 677.84
//
Query:       KIR64664.1  [L=446]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-30  104.1   0.0    1.6e-29  103.3   0.0    1.4  1  Peptidase_C39_2  Peptidase_C39 like family
    2.2e-09   37.4   0.0    4.2e-09   36.5   0.0    1.4  1  Peptidase_C70    Papain-like cysteine protease AvrRpt2
  ------ inclusion threshold ------
      0.065   13.0   0.0       0.63    9.9   0.0    2.1  2  Peptidase_C39    Peptidase C39 family


Domain annotation for each model (and alignments):
>> Peptidase_C39_2  Peptidase_C39 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.0   2.7e-33   1.6e-29       2     144 .]     236     387 ..     235     387 .. 0.90

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 2.7e-33
  Peptidase_C39_2   2 dvplynQlde..........lpngCeptslamvlsylgkkvtqnelakelktnssgdpntgfvgnit.dksglgvynepivklaekygl..kvs 82 
                       vp  +Q+ +          ++ +C+pts++mvl+y+g+ ++ ++la+  + +   dp+ ++++++t d+ + g+ n+p++++ ++     ++ 
       KIR64664.1 236 PVPARSQMIHkgnypewgggGQVWCSPTSTTMVLEYYGRGPSAEDLAWVTPGYT--DPQVAHAARMTwDYEYEGAGNWPFNTAYAASFPdiDAR 327
                      68999999445566669999999******************************8..9***********************8866666666999* PP

  Peptidase_C39_2  83 dtrgssieevkkeidagkPvvvsvtt.fkplndgeikftssgHlvvitGYdekgkrvyvnDPa 144
                      +tr +s++e+++ ++ag+Pv++s+++  ++l+    ++ +sgHl+v++G++ +g +v+vnDPa
       KIR64664.1 328 VTRLHSLDELERFVAAGIPVITSQSFlDTELD--GSNYGTSGHLFVVVGFTADG-DVIVNDPA 387
                      *************************9888884..568899**************.*******6 PP

>> Peptidase_C70  Papain-like cysteine protease AvrRpt2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0     7e-13   4.2e-09      16     135 ..     256     394 ..     233     404 .. 0.72

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 7e-13
  Peptidase_C70  16 aatgCwaaslsmiasyleqksidpselaal........vdk.....wslmdeglngeekialaeklGlveevpeppqs........yeieklvklL 90 
                     + +C ++s +m++ y++ ++ ++++la +        v++     w+   eg  g+   ++a ++ +                  ++ ++l   +
     KIR64664.1 256 GQVWCSPTSTTMVLEYYG-RGPSAEDLAWVtpgytdpqVAHaarmtWDYEYEG-AGNWPFNTAYAASF-P-------DidarvtrlHSLDELERFV 341
                    5679**************.4455666666645777666666455555555555.44555555555555.4.......134445559********** PP

  Peptidase_C70  91 raggPlivaiaspgdv.........vgHviVltGidedgavivhDPesgakrkk 135
                     ag+P+i+++     +         +gH  V++G+++dg+viv+DP+s+++ ++
     KIR64664.1 342 AAGIPVITSQSFLD-TeldgsnygtSGHLFVVVGFTADGDVIVNDPASSSNAEV 394
                    *********95332.22444457779***********************99875 PP

>> Peptidase_C39  Peptidase C39 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.095   5.7e+02      13      34 ..     260     281 ..     257     283 .. 0.84
   2 ?    9.9   0.0    0.0001      0.63      88     121 ..     369     407 ..     361     411 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.095
  Peptidase_C39  13 cGlaalamilkyygsevsleeL 34 
                    c + + +m+l+yyg+  s e+L
     KIR64664.1 260 CSPTSTTMVLEYYGRGPSAEDL 281
                    788899********98777766 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0001
  Peptidase_C39  88 HfvvvekikkkkvliadP.....akgkiklskeefekew 121
                     fvvv  + +  v+++dP     a+ +  +++e+fe++w
     KIR64664.1 369 LFVVVGFTADGDVIVNDPasssnAEVRNVYQREQFEQIW 407
                    599***************8776666778899*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3429.89
//
Query:       KIR64665.1  [L=438]
Description: carboxypeptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-68  232.3   0.5    1.2e-68  232.0   0.5    1.1  1  Peptidase_M14  Zinc carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M14  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.0   0.5   6.8e-73   1.2e-68       3     287 ..     126     413 ..     124     415 .. 0.91

  Alignments for each domain:
  == domain 1  score: 232.0 bits;  conditional E-value: 6.8e-73
                    HHHHHHHHHSTTTEEEEEEEE-TTS-EEEEEEE-SSTTSTTST-CEEEEEE-SSTT-HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHEEEEEES-S CS
  Peptidase_M14   3 ayldalaarypdlvrlvsiGkSvegRplkvlkisssateaeegkpvvlidggiHarEwigsalllylleqLlsaYgedeeikellddtdiyilpvl 98 
                    a+ +++ a++p+l+r++siGkS+egR+l ++kis++  ++ e++p++l+++ +HarE ++ ++++yll+ ++ +Yg+d+++++++++ +i+i+p++
     KIR64665.1 126 AVVNKVVADHPTLARKISIGKSYEGRDLMAVKISDNV-ATDEAEPEILFNSQQHAREHLTVEMAIYLLNLFTDSYGSDSRVTNIVNTREIWIVPTV 220
                    6778999****************************95.999******************************************************* PP

                    THHHHHHHHH..T-TTTTST-SBCTTSSSBS--GGGSSSSSTTSS.SSBSSTTSTTBHHSSTT.SHHHHHHHHHHHH......TTEEEEEEEEESS CS
  Peptidase_M14  99 NPDGyeysst..edrlwrknrsnakessceGvDlnRnFpdlwnse.gastspcsetyrgpapfsepetravlefiqk......knivlfidlhsys 185
                    NPDG ey     + r wrknr+++++ s++G+DlnRn+ ++w+   g+s  p s+tyrgp++fs+pet+a+++f+++      ++i++ id+h+ys
     KIR64665.1 221 NPDGSEYDIAtgSYRSWRKNRQPNSGASAVGTDLNRNWGYNWGCCgGSSGLPSSSTYRGPSAFSAPETKALRDFVNSrvvggvQQIKANIDWHTYS 316
                    *******9887899****************************88856***************************9999****************** PP

                    SEEEESHSSSS---SS-TTHHHHHHHHHHHHHHHCHTTTTEEE-EEEEEHHHHT---SS-HHHHHHHHTT-SEEEEEEESSSSS...STTS--GGG CS
  Peptidase_M14 186 qvilypygstrdeispppddeelkslarkyaealqkmvrgteylsegitngaliyeasggmddwayertgvkfeytlelrdegk...qgflppasq 278
                    q++l+p+g+t  +++   + ++++ +a+ +++  +++ +     + + ++ + +y + g + dw+   +g+ ++yt+e+ ++ +    gf+pp++ 
     KIR64665.1 317 QLVLWPFGYTTANTTTGMTADQYNTFATLGQQMAATNGY-----TPE-QSSD-LYITDGDSLDWMWATHGI-WAYTFEMYPGSSgagGGFYPPDEV 404
                    ***********8866666666666555555555544333.....333.5667.9*****************.*********999999********* PP

                    HHHHHHHHH CS
  Peptidase_M14 279 iepeaeenw 287
                    i+     n+
     KIR64665.1 405 IPAQTSRNK 413
                    *98877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 3013.46
//
Query:       KIR64666.1  [L=312]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-40  136.9   0.2    9.5e-40  136.6   0.2    1.1  1  Peripla_BP_2  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   0.2   5.3e-44   9.5e-40       1     237 [.      59     287 ..      59     288 .. 0.95

  Alignments for each domain:
  == domain 1  score: 136.6 bits;  conditional E-value: 5.3e-44
                   EEE-SHHHHHHHHHTT-GGGEEEB-GGG--GGGGGGT..TS-BSBESSSB-HHHHHHH--SEEEE-GGG...GGGHHHHHHHS-EEE----TTSHHH CS
  Peripla_BP_2   1 iaslspsvteillalGatdkvvgvdtttsdpldadkleeaivevgadgeidvEklaalkPDlvilskglgltdedeellksgiptvivessntgesl 97 
                   i+slsp+ te+l+a+Ga ++v++vd  +++p da+k      +  ++ +++ E++a   PDlv+ls++   ++  e+l  ++ip++  +   t+e+ 
    KIR64666.1  59 IVSLSPTATEMLFAIGAGKQVAAVDDQSNYPPDAPK------SDLSGFQPNAEAIAGKSPDLVVLSNDT--NKIVEQLTTLKIPVLLTPAATTLEDT 147
                   9*********************************86......458889*********************..************************** PP

                   HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT.-EEEEEEEETTE..EEEE-TTSTTTHHHHTS--EESTTT--....STT-EEE-HHHHH CS
  Peripla_BP_2  98 keqiralgellgledeaeklvaeidsklaaaksaidsekpkpvlvfggadeggyvvagsnsyigdlldalgieniaaesk....kseyeeisaEqil 190
                   ++q+ +lg+l+g++dea ++ ++i++ +a++ +++++   ++ l+++   + + + a+s+++ig +   +g+enia++s     +++y ++s E i+
    KIR64666.1 148 YRQLIELGTLTGHPDEAADVNNRIKDDIAKLTKDLPQR--SAKLTYYHELGPELYSATSKTFIGSIYALAGLENIADASDadgkNGGYPQLSQEIIV 242
                   **************************************..5555555555559**********************888888**************** PP

                   HH--SEEEEEEHHHHT-S--HHHHT-SHHHHTSHHHHTT-EEEE-HH CS
  Peripla_BP_2 191 asdpdvifvsgraeadnktgleflkenpllaelpAvkngrVyaldss 237
                   +++pd +f +++  +  k+ +e +k++ ++a+++Avkn++V+ald++
    KIR64666.1 243 KANPDFVFLADT--KCCKQSPETVKARSGWAGVTAVKNNQVVALDDD 287
                   ************..99****************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2255.82
//
Query:       KIR64667.1  [L=360]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-87  292.9  28.8    2.9e-87  292.6  28.8    1.0  1  FecCD     FecCD transport family
      6e-09   35.8  10.9    1.1e-08   34.9  10.9    1.5  1  ABC-3     ABC 3 transport family


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.6  28.8   3.2e-91   2.9e-87       2     311 ..      30     353 ..      29     354 .. 0.97

  Alignments for each domain:
  == domain 1  score: 292.6 bits;  conditional E-value: 3.2e-91
       FecCD   2 lllllllslllgavkispsevfeallgka.........dsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlal 91 
                 +l++l++ ++lg+v+++p  v + ll+           ++ e  iv+elrlprv+++llvG++La+aG   Q+v+rNpLadP++lG+ +ga+l++++++
  KIR64667.1  30 VLVALVAGVSLGPVSLPPGSVAAELLNLLpgvrldsglSEREIAIVTELRLPRVVLGLLVGGLLALAGGCYQGVFRNPLADPYLLGVAAGAGLAVTAVI 128
                 6889999*******************988999999999888889******************************************************* PP

       FecCD  92 lll.....lgslslfalplaaflgallalllvllla.rkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllv 184
                  l+     +++    ++plaaf+g+l a+++++ll   +++g s+++liLaG+avsa+lsa  ++ll   n++++++++ wllG l++a w++v l+l+
  KIR64667.1 129 SLGagaggALTGLPLTIPLAAFVGSLGAVAMTYLLGvAGGRGRSTATLILAGVAVSAFLSAGQTYLLQR-NSDSIQQVYSWLLGRLATAGWHDVRLVLP 226
                 *****9997778889*******************9988999**************************99.***************************** PP

       FecCD 185 llllllllllllarkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladlla 283
                  +ll+++++ll++r+ld+l++gd++A+slG++++r r+ll+++++l ta+av+++G igFvG+ivPh++rll+g+++r +lpls l+G+++l+l+d++a
  KIR64667.1 227 YFLLTTVVVLLHRRELDVLSVGDDEASSLGLHPQRSRYLLIAAASLGTAAAVSASGLIGFVGIIVPHTVRLLAGSSYRVILPLSLLFGGAFLALTDVVA 325
                 *************************************************************************************************** PP

       FecCD 284 rlllsptelpvgivtaliGapffiylll 311
                 r++++p+e+p+g+vtal+G+pff+++l+
  KIR64667.1 326 RTAAAPAEVPIGVVTALLGGPFFVLVLR 353
                 ************************9986 PP

>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9  10.9   1.3e-12   1.1e-08      59     239 ..     147     332 ..     109     353 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.3e-12
       ABC-3  59 gailvgliaavalellkrkt.....klkedtaigivlsvflalglv.lvslikkskvdldsyLfGniltisqedliliaiieavvllllllfwkellli 151
                  a++vg ++ava+++l   +      +++ ++ g+ +s+fl+ g   l++++++s +++ s+L+G ++t   +d+ l++   +++ +++ll ++el ++
  KIR64667.1 147 LAAFVGSLGAVAMTYLLGVAggrgrSTATLILAGVAVSAFLSAGQTyLLQRNSDSIQQVYSWLLGRLATAGWHDVRLVLPYFLLTTVVVLLHRRELDVL 245
                 356788899999999865432211145555678***********761556666699******************************************* PP

       ABC-3 152 tfdeelAkveglsvkllkllllalialavvvalqavGviLvialliiPaatArrltrslesllivAillglvsvvaGlllSyyldlat 239
                 ++  + A + gl++++ ++ll+a  +l  ++a+ a G+i  + + i+P  + ++ ++s + +l ++ l+g  ++++  ++  ++ +++
  KIR64667.1 246 SVGDDEASSLGLHPQRSRYLLIAAASLGTAAAVSASGLIGFVGI-IVPHTVRLLAGSSYRVILPLSLLFGGAFLALTDVVARTAAAPA 332
                 **************************************998887.6799999999999999999999999888776665555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2619.42
//
Query:       KIR64668.1  [L=263]
Description: glyoxalase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-19   69.3   7.7    1.4e-10   42.0   0.3    2.8  3  Glyoxalase_6  Glyoxalase-like domain
    3.1e-10   40.3   0.0    9.9e-06   25.8   0.0    2.6  2  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge


Domain annotation for each model (and alignments):
>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   1.8   8.7e-11   7.8e-07       5     106 ..      15     119 ..      11     120 .. 0.76
   2 ?    2.1   0.0     0.036   3.2e+02      80     102 ..     127     150 ..     124     152 .. 0.90
   3 !   42.0   0.3   1.5e-14   1.4e-10       6     107 .]     144     257 ..     139     257 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 8.7e-11
  Glyoxalase_6   5 daadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpe........pakn.rvHldlavedldaevarlvalGArvlreprdgth 92 
                   +++  a + +F+ +++gw+ +  +  +++++g +    d+         +        p +   + + +a++++d  + r++a+G++vl +p d   
    KIR64668.1  15 ATPGLADARRFYPELFGWTTRIAP--QPEAAGYTTFLLDGRA-------VagagppaaPDQVpIWSTYVATDHADLVTTRVEAAGGQVLVAPFDVFD 102
                   5677788999*********99999..4455554443333333.......334554446444434************************999999876 PP

  Glyoxalase_6  93 gr...vlaDPeGneFcv 106
                   ++   v+aDP+G++F v
    KIR64668.1 103 QGrmaVFADPAGAVFSV 119
                   667************98 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.036
  Glyoxalase_6  80 GArvlreprdgthgr.vlaDPeGn 102
                   GA+  ++p ++ + + v  DPeG+
    KIR64668.1 127 GAELFDTPGAMSWNElVTPDPEGA 150
                   999999999999999********8 PP

  == domain 3  score: 42.0 bits;  conditional E-value: 1.5e-14
  Glyoxalase_6   6 aadpaalaaFwaaalgweveree......aaledpegvgpaaedaatllfqrvpe.................paknrvHldlavedldaevarlval 79 
                   ++dp+ +  F++ ++gw  e+++      +  ++p          +    ++  +                 p    + + +av+d+da++ar+ +l
    KIR64668.1 144 TPDPEGAKVFYELVFGWHPEEQPagpvppEMGDSP---------YTGWRCGE--RivggmmppladdfpadlP--AYWTVYFAVADADATAARAAEL 227
                   689999999**************444333111222.........22222222..1335566667778866554..35******************** PP

  Glyoxalase_6  80 GArvlreprdgthgr..vlaDPeGneFcvv 107
                   G++vl +p+d  +gr   l+DP+G+ F v+
    KIR64668.1 228 GGSVLVPPHDTPQGRlaALRDPQGALFSVI 257
                   ************999************996 PP

>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   2.4e-05      0.22       7     126 ..      14     117 ..      11     119 .. 0.86
   2 !   25.8   0.0   1.1e-09   9.9e-06       7     127 ..     142     255 ..     136     256 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.4e-05
                 EEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGEEEEEE CS
  Glyoxalase   7 llvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvkvvaep 105
                 l+++ l+ + +FY + +G++           e ++++ f  +g+ ++ ++ +a+++  + +            ++ +++  +    r+++ag++v   p
  KIR64668.1  14 LATPGLADARRFYPELFGWTTRIAPQ----PEAAGYTTFLLDGRAVAGAGPPAAPDQVPIW-----------STYVATDHADLVTTRVEAAGGQVLVAP 97 
                 67888999999999999998665555....7899999999999999999999999999999...........6777888888999************** PP

                 ECHHCTEEEEEEEEETTSEEE CS
  Glyoxalase 106 grhyfgalysfyfrDpdGill 126
                  + +  +++ + f Dp G  +
  KIR64668.1  98 FDVFDQGRMAV-FADPAGAVF 117
                 99999999966.*****9876 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 1.1e-09
                 EEESHHHHHHHHHHHHHTSEEEEEEEE..EESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGEEEE CS
  Glyoxalase   7 llvgdleksldFYtkvLGfklvkktdn..teeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvkvva 103
                 l+++d+e +  FY+ v+G++  ++      +e++   ++  ++g++ ++ +  + +++ ++            + ++++v d +++  r++e g++v  
  KIR64668.1 142 LVTPDPEGAKVFYELVFGWHPEEQPAGpvPPEMGDSPYTGWRCGERIVGGMMPPLADDFPADL-------PAYWTVYFAVADADATAARAAELGGSVLV 233
                 789*********************998876777888999999***999988888888888887.......78*************************** PP

                 EEECHHCTEEEEEEEEETTSEEEE CS
  Glyoxalase 104 epgrhyfgalysfyfrDpdGille 127
                 +p +++ g+l     rDp G l+ 
  KIR64668.1 234 PPHDTPQGRLAA--LRDPQGALFS 255
                 ***********6..9*****9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1981.44
//
Query:       KIR64669.1  [L=245]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-12   45.9  13.7    6.7e-12   45.3  13.7    1.2  1  ABC2_membrane    ABC-2 type transporter
    0.00094   18.4  13.6    0.00094   18.4  13.6    1.6  2  ABC2_membrane_3  ABC-2 family transporter protein
  ------ inclusion threshold ------
        1.1    7.9   2.4        1.2    7.8   2.4    1.3  1  EMP70            Endomembrane protein 70


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3  13.7   1.1e-15   6.7e-12       7     205 ..       8     204 ..       3     208 .. 0.90

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 1.1e-15
  ABC2_membrane   7 lkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsayvlakv 101
                     ++++lq +r p+   + + ++p + +l+f + f   g + +++     ++++++++ a ++  +v++  +r+++     ++ p   +++ ++++v
     KIR64669.1   8 ARYQLLQTVRIPVAV-FGSAFFPAVAMLFFVVPFA--GdDPTGATYATAAMVTFAVMSANIFQYGVGVAEDRDQPWNPYTRTLPA-GAAPAFAGRV 99 
                    57899*******999.9******************..534445554467777777777778999999999999999999999999.99******** PP

  ABC2_membrane 102 lvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwlqwiayl 195
                    l+ l++++l  l +++i+ ++++ ++s  +f+l+++++ l+++ ++ +gl+i+  +ps + a+++a++v++pl + +G +  +d+ p ++++ia +
     KIR64669.1 100 LAGLALTFLSLLPVVVIAALFTDARISpgAFVLAVVVVGLISVPFTLMGLAIGYALPS-KAAIVVAQIVFFPLAFGGGLLSAPDAAPAFVRAIAPY 194
                    ***************************9999**************************9.9***************************9******** PP

  ABC2_membrane 196 nPltyaveal 205
                    +P + ave++
     KIR64669.1 195 LPTRGAVELM 204
                    **99999987 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.4     0.061   3.7e+02     246     270 ..      25      49 ..      17      92 .. 0.54
   2 !   18.4  13.6   1.6e-07   0.00094     166     343 ..      55     232 ..      42     234 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.061
  ABC2_membrane_3 246 llfglayialgyllsslfknsetaq 270
                        f+ a+++l++++ ++ ++++ a 
       KIR64669.1  25 SAFFPAVAMLFFVVPFAGDDPTGAT 49 
                      4455555555555555555552221 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.6e-07
  ABC2_membrane_3 166 liliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilll...afglgipfgnlglllllfllfglayialg 256
                      ++ + +++  +++  v+++e++ +       + +  ++  + +++l+ +++ +l+ll ++++   + +  i+ g ++l+++++ l +  ++ +g
       KIR64669.1  55 MVTFAVMSANIFQYGVGVAEDRDQPWNPYTRTLPAGAAPAFAGRVLAGLALTFLSLLPVVVIaalFTDARISPGAFVLAVVVVGLISVPFTLMG 148
                      5555555555555555566666666655556666666666666666666666666655444421155547777777777777777777777777 PP

  ABC2_membrane_3 257 yllsslfknsetaqilifivilllsgffgglfp.ledlpsalkwifsiiPffapglgllrlitgdplweil.lsliilalfavvyllla 343
                      ++++++  + ++a++++ iv++ +++f ggl +  ++ p +++ i+ ++P+    +++   + gd  w+ +  s+++l + +v++ +la
       KIR64669.1 149 LAIGYALPS-KAAIVVAQIVFF-PLAFGGGLLSaPDAAPAFVRAIAPYLPTRGAVELM-WAAVGD--WRPApVSVVMLGVWVVALAALA 232
                      777777776.588999******.6666666655378899*************988888.88999*..7877577777777777777776 PP

>> EMP70  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.4    0.0002       1.2     339     394 ..      99     155 ..      20     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0002
       EMP70 339 llpgllflvffllnlilwakessga.lpfgtlvlllllwflisvPlvliGsllgfkk 394
                 +l gl ++++ ll ++++a   + a ++ g +vl +++  lisvP++l+G  +g+  
  KIR64669.1  99 VLAGLALTFLSLLPVVVIAALFTDArISPGAFVLAVVVVGLISVPFTLMGLAIGYAL 155
                 6778888889999999888877655388999999999*****************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1809.69
//
Query:       KIR64670.1  [L=306]
Description: ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-30  105.2   0.0    1.1e-28  100.5   0.0    2.0  2  ABC_tran     ABC transporter
    5.3e-15   56.0   0.2    4.2e-08   33.3   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00077   19.7   0.0      0.012   15.9   0.0    2.3  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
     0.0025   17.3   0.0        1.9    7.8   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
     0.0036   17.4   0.1     0.0091   16.1   0.0    1.8  2  MMR_HSR1     50S ribosome-binding GTPase
     0.0047   16.6   0.0     0.0094   15.7   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
     0.0054   16.7   0.0     0.0093   15.9   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
      0.009   16.5   0.0      0.014   16.0   0.0    1.2  1  AAA_23       AAA domain
  ------ inclusion threshold ------
      0.015   16.0   0.0      0.028   15.2   0.0    1.4  1  DUF4162      Domain of unknown function (DUF4162)
       0.07   13.2   0.1       0.44   10.6   0.0    2.0  2  Dynamin_N    Dynamin family
       0.14   11.7   0.0       0.28   10.7   0.0    1.4  1  AAA_27       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.0   6.7e-32   1.1e-28       1     136 [.      19     155 ..      19     156 .. 0.93
   2 ?    2.8   0.0     0.093   1.5e+02      26      80 ..     165     234 ..     164     274 .. 0.72

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 6.7e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........HHHTCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren........esdeeiekalsk 91 
                 l++v+l++++ge+v+++G+nGaGKStLl+ll gl +pt+G+++l g d ++   +  r ++gv pqe+ l  +l+v+e          + +   ++l++
  KIR64670.1  19 LDRVDLDVRAGELVGLLGPNGAGKSTLLNLLVGLRRPTAGRVELFGGDPRD---PAHRLQVGVTPQETGLPATLRVGEVvdfvaahyPDPVPRGELLDR 114
                 789******************************************999999...999**********************9988887655666999**** PP

                 STTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  92 lglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +gl++   + +      LSgGq++r+a+a a++ +p+l+llDEpt
  KIR64670.1 115 FGLTDQVRRQA----GGLSGGQRRRLAVALAFVGRPRLVLLDEPT 155
                 **999666666....*****************************9 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.093
                 HHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................x RF
    ABC_tran  26 tLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..................e 80 
                 tL +++ g +  + G++ll ++ l+e   e l +++ v+ q   l +++t++ +                   
  KIR64670.1 165 TLWEAIRGFH-ADGGTVLLSSHYLEE--VEALAHRVVVIGQGRVLADDTTAAIRsvvgvrrvslvagdlpdlP 234
                 6777887775.589***999998888..**************9999999854433455555555555555441 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   1.8e-07    0.0003       2      25 ..      32      55 ..      31      96 .. 0.75
   2 !   33.3   0.0   2.6e-11   4.2e-08     228     299 ..     119     187 ..     108     191 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.8e-07
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl 25
                 +l GpNg+GKS+LL +l +l+r 
  KIR64670.1 32 VGLLGPNGAGKSTLLNLLVGLRRP 55
                689******************873 PP

  == domain 2  score: 33.3 bits;  conditional E-value: 2.6e-11
      AAA_21 228 dgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299
                 d   ++a  lS G++r la+++a+  ++   +l+l+DEp +gL+ ++ ++l+e ++  ++ g+ v+l++H  
  KIR64670.1 119 DQVRRQAGGLSGGQRRRLAVALAFVGRP---RLVLLDEPTTGLDVEARHTLWEAIRGFHADGGTVLLSSHYL 187
                 566778899********99999999999...************************999999*********75 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.2e-06     0.012      24      89 ..     119     171 ..     109     172 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.2e-06
     SbcCD_C  24 kelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                  +++r++g+lSGG++   +++ala      +        ++rlv+LDE   +lD e ++tl e+++
  KIR64670.1 119 DQVRRQAGGLSGGQR-RRLAVALA------FVG------RPRLVLLDEPTTGLDVEARHTLWEAIR 171
                 468999*********.33333333......223......589******************999876 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0017       2.8      27      42 ..      32      47 ..      20      53 .. 0.84
   2 !    7.8   0.0    0.0012       1.9     137     186 ..     128     173 ..     108     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0017
                EEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxx RF
       SMC_N 27 taivGpNGSGKsnlld 42
                  ++GpNG+GKs ll+
  KIR64670.1 32 VGLLGPNGAGKSTLLN 47
                5689********9986 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0012
                 S-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 137 LSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkek 186
                 LSgG++  +a+aL f    v +  l+llDe    LD + ++ + e ++  
  KIR64670.1 128 LSGGQRRRLAVALAF----VGRPRLVLLDEPTTGLDVEARHTLWEAIRGF 173
                 9******99999997....566679***************9999999854 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.6e-06    0.0091       2      22 ..      32      58 ..      31     176 .. 0.78
   2 ?   -1.7   0.0       1.8   2.9e+03      50      58 ..     230     238 ..     205     273 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.6e-06
                EEEEESTTSSHHHHHHHHHT......S CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg......e 22
                v+++G   +GKStL+n l+g       
  KIR64670.1 32 VGLLGPNGAGKSTLLNLLVGlrrptaG 58
                899****************85443330 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.8
                 EEECGGCSS CS
    MMR_HSR1  50 lvDtpGlie 58 
                 l D+pG++ 
  KIR64670.1 230 LPDLPGVVR 238
                 668899654 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.7e-06    0.0094      16      39 ..      23      46 ..      18      56 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.7e-06
      AAA_29 16 tieidlkgatlltGpsGsGKSTll 39
                +++++  + + l Gp+G+GKSTll
  KIR64670.1 23 DLDVRAGELVGLLGPNGAGKSTLL 46
                5566544477899**********9 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.7e-06    0.0093      99     122 ..      29      52 ..      16      72 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.7e-06
                  TSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpe 122
                  ++++ l+G+ G+GKStL+n l++ 
   KIR64670.1  29 GELVGLLGPNGAGKSTLLNLLVGL 52 
                  478889***************975 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   8.3e-06     0.014      20      38 ..      30      48 ..      16      50 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.3e-06
      AAA_23 20 gltlItGpNGaGKTTildA 38
                 l+ + GpNGaGK+T+l+ 
  KIR64670.1 30 ELVGLLGPNGAGKSTLLNL 48
                578899***********86 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   1.7e-05     0.028      21      79 ..     227     283 ..     211     285 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-05
                 -----..---EEEE-TTS-EEEEE-------------.----EEEEEEEE---HHHHHHH CS
     DUF4162  21 aeelleepgveeveeeggelelkledeeaanellkal.tsgveirsFeeeePsLndIFie 79 
                 a++l ++pgv  ve+ +++  l  +   +a +l ++l +sgv+ r +e+++ sL++ F+ 
  KIR64670.1 227 AGDLPDLPGVVRVEQVDDRTHLLTT---DADRLVRELvASGVSFRDLEVRPTSLEEAFLA 283
                 6778899**9999999976555555...5789*****88*****************9986 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00027      0.44       1      22 [.      32      53 ..      32      59 .. 0.87
   2 ?   -0.1   0.0      0.54   8.8e+02     105     119 ..     230     244 ..     213     263 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00027
                EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlged 22
                + ++G   +GKS++ln L+g +
  KIR64670.1 32 VGLLGPNGAGKSTLLNLLVGLR 53
                5688999************965 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.54
                 EEE---B-SSSGTTS CS
   Dynamin_N 105 lvDlPGldsvnkrdq 119
                 l DlPG+ +v++ d 
  KIR64670.1 230 LPDLPGVVRVEQVDD 244
                 569*****9998775 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00017      0.28      10      45 ..      12      48 ..       6      54 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
      AAA_27 10 ryGkf.tdrsldfsaeeadlhliyGpNEAGKstalrA 45
                ryG + +  ++d++  + +l  ++GpN AGKst+l+ 
  KIR64670.1 12 RYGDVlALDRVDLDVRAGELVGLLGPNGAGKSTLLNL 48
                66664133578888889999999**********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2151.54
//
Query:       KIR64671.1  [L=669]
Description: ATPase AAA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-09   36.3   0.0    8.2e-07   29.5   0.0    3.2  2  AAA_19           AAA domain
    6.2e-07   29.2   0.0      0.028   14.0   0.0    2.2  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
    2.2e-05   23.9   0.0      0.012   14.9   0.0    2.7  3  DUF2075          Uncharacterized conserved protein (DUF2075)
    3.7e-05   23.4   0.2    9.7e-05   22.1   0.2    1.7  1  UvrD_C_2         UvrD-like helicase C-terminal domain
     0.0001   22.1   0.1      0.034   13.9   0.0    3.1  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    0.00023   20.9   3.5       0.75    9.5   0.0    3.8  3  AAA_30           AAA domain
      0.001   18.6   0.0       0.18   11.2   0.0    2.3  2  PhoH             PhoH-like protein
  ------ inclusion threshold ------
      0.029   14.4   0.0       0.66   10.0   0.0    2.2  2  ResIII           Type III restriction enzyme, res subunit
      0.041   13.7   0.2       0.46   10.2   0.0    2.3  2  AAA_11           AAA domain
      0.078   13.2   0.0        8.2    6.7   0.0    2.6  2  AAA_22           AAA domain
      0.079   13.3   0.1      0.079   13.3   0.1    3.3  4  AAA_16           AAA ATPase domain
       0.08   12.8   2.5       0.27   11.0   0.1    2.8  3  MEDS             MEDS: MEthanogen/methylotroph, DcmR Sensory 
      0.085   12.6   0.0       0.62    9.8   0.0    2.1  2  DEAD             DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.17   2.4e+02      51      75 ..      23      54 ..      10     144 .. 0.76
   2 !   29.5   0.0   5.9e-10   8.2e-07       5     140 ..     184     486 ..     180     490 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.17
      AAA_19 51 tgrAakelrerlaalgae.......atTiHrl 75
                 + A  ++rer++al a        a+T   l
  KIR64671.1 23 SRAALARMRERTEALFATghnvagdAYTAETL 54
                577899******77777666666664444443 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 5.9e-10
      AAA_19   5 vealkekvllvtaGpGtGKTrvlkhivallvelggvkp..eeillvaftgrAakelrerlaalgae...atTiHrlal..................... 77 
                 v+a  +  ++v + pGtGKT v  h+ a+l+ l+++ +    +l+v +++   + ++  l alg+      T+  l                       
  KIR64671.1 184 VRADLAASICVQGAPGTGKTAVGLHRAAYLLYLHRERLrrSGVLIVGPNRAFLSYIAAVLPALGEVeveQATVEDLIArvpvrtvedpavaalkhdarm 282
                 5555566789*******************9988887774467999999999999999977655544566566665533566666666666889999999 PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  KIR64671.1 283 aevlrraveariaapaepimvsdgsfrwrigldplhrvveetrreglpyatgrervrarvvgllqrqaearraespgdawlrrmgkirpvadfldavwp 381
                 99************************************************************************************************* PP

      AAA_19  78 .................................................ldfddlltealelleeaeeekklqeee.llivDEfqdvdelqyrLlkall 126
                                                                   +   l++ea++lle+        +++ +++vDE+qd++++q r + +  
  KIR64671.1 382 altpeglvhglladpavlaaaadgvlteaeqalltwakpprtpkatkwtAADAVLVDEAAGLLER-------PAGFgHVVVDEAQDLSPMQCRAIARRS 473
                 *******************9999999999999999999999988877753333344556666664.......56889**************99999999 PP

      AAA_19 127 gekkklllvGDpdQ 140
                 +++  ++l+GD  Q
  KIR64671.1 474 EHGS-ITLLGDLAQ 486
                 5556.******998 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.8e-05     0.052       2      42 ..     177     218 ..     176     230 .. 0.83
   2 !   14.0   0.0     2e-05     0.028     257     294 ..     450     486 ..     429     488 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.8e-05
                    SHHHHHHHHS.-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS CS
  UvrD-helicase   2 npeqreaias.lggpilveAsAGsGKTfvlaerilrlikeee 42 
                    +peq e ++  l  +i v  ++G+GKT+v  +r ++l+  ++
     KIR64671.1 177 QPEQDELVRAdLAASICVQGAPGTGKTAVGLHRAAYLLYLHR 218
                    5789999999999***********************986554 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2e-05
                    SSEEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG CS
  UvrD-helicase 257 ykeiliDEyQDTnkiQyrilkllasgheelfmvGDpkQ 294
                    + ++ +DE+QD++++Q r + + +++   +++ GD  Q
     KIR64671.1 450 FGHVVVDEAQDLSPMQCRAIARRSEHG-SITLLGDLAQ 486
                    789****************99998887.7999999877 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   8.6e-06     0.012       4      38 ..     192     229 ..     189     254 .. 0.78
   2 !    5.8   0.0     0.005       6.9      87     230 ..     430     581 ..     412     586 .. 0.74
   3 ?   -1.9   0.1       1.1   1.5e+03     344     359 ..     644     659 ..     639     662 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.6e-06
     DUF2075   4 vlVtGvaGtGKtvvllnllael...eddeeertavyls 38 
                 + V+G++GtGKt v+l+ +a l   ++++++r+ v+++
  KIR64671.1 192 ICVQGAPGTGKTAVGLHRAAYLlylHRERLRRSGVLIV 229
                 78***************999987765555555555554 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.005
     DUF2075  87 pkedvvivDEAhrllt......ksdq...aekqseenqlkelmkrak.vvvalvDe.gQelntgeigteeelkklakkleveleekvhLksqfRvaase 174
                   +d v+vDEA  ll+      +      +++   + q + + +r++  ++ l+++ +Q       +  ++ ++++++l++ +   v L++ fRv  ++
  KIR64671.1 430 TAADAVLVDEAAGLLErpagfgH--VvvdEAQDLSPMQCRAIARRSEhGSITLLGDlAQ---GTAPWAARDWRESLAHLGKPDATVVPLSVGFRV--PA 521
                 57899999999999995555541..1443445557899999999955577777776144...4555888999999999999999999********..99 PP

     DUF2075 175 aviewvdalldgkkekakplss...qenfdirvfddleelk.kalkeknkesgrsrlvat 230
                 av+++ ++ll   +    p +s   +   d+r +ddl ++  +++++    +g+++++a+
  KIR64671.1 522 AVVAFANRLLPALAVDVPPAESlrrDGALDVRTVDDLVAATvAEVRAALAHDGSVGVIAA 581
                 9******99976666655555566689999999999988762446666666667777765 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.1
     DUF2075 344 NayrVLLtRGrkGlyi 359
                 ++++V+LtR+++ l +
  KIR64671.1 644 HRLYVVLTRAVSRLTV 659
                 799*******987665 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.2     7e-08   9.7e-05      10      51 ..     619     659 ..     611     660 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 7e-08
    UvrD_C_2  10 aQGsefpaVivfdpdlaaarmgelrrrlLYtavTRAreklil 51 
                 ++G+e+++V+ ++p +  a +++   + LY+ +TRA  +l++
  KIR64671.1 619 VKGLEYDHVVTVEPAAIVAAEPR-GLHRLYVVLTRAVSRLTV 659
                 7**************65555565.7***********999987 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.06        83       2      14 ..     193     205 ..     192     225 .. 0.85
   2 !   13.9   0.0   2.5e-05     0.034      50     232 ..     437     659 ..     412     661 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.06
  Viral_helicase1   2 vvhGvpGcGKStl 14 
                       v+G+pG GK+ +
       KIR64671.1 193 CVQGAPGTGKTAV 205
                      79*********75 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.5e-05
  Viral_helicase1  50 vdsflmalvkstkgkililDEylllhaGyilllaalskaklvilfGDplQipfh..srnasfllahlpsslshrvgrrttyllpsdvaeilsak 141
                      vd++   l ++ ++  +++DE++ l + +  ++a++s+   + l+GD +Q++     r+   +lahl +    +v+ +   + p+ v+++ ++ 
       KIR64671.1 437 VDEAAGLLERPAGFGHVVVDEAQDLSPMQCRAIARRSEHGSITLLGDLAQGTAPwaARDWRESLAHLGKPDATVVPLSVGFRVPAAVVAFANRL 530
                      56666666666678889*********************************98762144445688888888899999999999********9999 PP

  Viral_helicase1 142 .vgteveversgel..kvetepkgqe.kvlvyltftqalkealgvr...................................evttvhevqGltf 196
                           v v  +++l   ++ +   ++  v++  ++++a++++ g+                                     v     v Gl++
       KIR64671.1 531 lPALAVDVPPAESLrrDGALDVRTVDdLVAATVAEVRAALAHDGSVgviaaddavgglraaladagidtataddvaaparvTVVPATLVKGLEY 624
                      95555555555555334444555553466666666666666666669999999999999999999*************99888888999***** PP

  Viral_helicase1 197 dkVtlvllketdlelisesrenllvAlTRhrkslvi 232
                      d+V+ v        +  ++ + l+v lTR+ ++l++
       KIR64671.1 625 DHVVTVEPAA-IVAAEPRGLHRLYVVLTRAVSRLTV 659
                      ***9999966.556566789***********99987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00055      0.75       2      34 ..     176     205 ..     175     235 .. 0.89
   2 !    7.6   0.3    0.0021       2.9      87     130 ..     447     489 ..     393     511 .. 0.73
   3 ?   -3.1   0.2       3.8   5.3e+03      36      53 ..     564     580 ..     540     635 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00055
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKtta 34 
                 +++eQ ++v+a l+ +    +++G++GtGKt +
  KIR64671.1 176 IQPEQDELVRADLAAS---ICVQGAPGTGKTAV 205
                 5789999999988888...79**********86 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0021
      AAA_30  87 epg.tllivDEagmvdtkqlaallkaaekagakvilvGDerQlas 130
                  +g   ++vDEa  ++  q +a++++ e+   ++ l+GD +Q ++
  KIR64671.1 447 PAGfGHVVVDEAQDLSPMQCRAIARRSEH--GSITLLGDLAQGTA 489
                 34456799999999999999999999877..99999999999765 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.8
      AAA_30  36 kalreaweaaggrviglA 53 
                 +++r+a++++g +v ++A
  KIR64671.1 564 AEVRAALAHDG-SVGVIA 580
                 44444444444.233333 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.012        17       6      44 ..     177     214 ..     172     225 .. 0.74
   2 !   11.2   0.0   0.00013      0.18     123     161 ..     453     490 ..     450     506 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.012
                 SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHH CS
        PhoH   6 tkeQkeylealkkndivfaiGpaGtGKtylavalaveal 44 
                 + eQ+e+++a  + +i ++ G  GtGKt + +  a+ +l
  KIR64671.1 177 QPEQDELVRADLAASI-CVQGAPGTGKTAVGLHRAAYLL 214
                 5667777766555555.467999*******999887665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00013
                 EEE-SGGG--HHHHHHHHTTB-TT-EEEEEE-------- CS
        PhoH 123 vilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlp 161
                 v++DEAQ+++++q + +  R  ++s + ++Gd++q   p
  KIR64671.1 453 VVVDEAQDLSPMQCRAIARRSEHGS-ITLLGDLAQGTAP 490
                 99*************9988877666.7899**9998766 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.14   1.9e+02     129     154 ..      71      93 ..      23     133 .. 0.68
   2 ?   10.0   0.0   0.00048      0.66      24      64 ..     189     233 ..     161     240 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.14
                 HTTT-S.EEEEETGGGTTS.TTTHHHH CS
      ResIII 129 lrdrfd.viiiDEaHrlgakkswreil 154
                  + +f  + + DE H++g+     ++ 
  KIR64671.1  71 TPLFFGrLTFGDEEHHIGRR----HVT 93 
                 33333378999******994....333 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00048
                 TSEEEEEESTTSTHHHHHHHHHHHH-S.........-EEEEESSH CS
      ResIII  24 dkrglikmaTGtGKTlvaaklierllkkgkee....kflflvprk 64 
                    ++++ a GtGKT v ++ +++ll  ++e+     +l++ p++
  KIR64671.1 189 AASICVQGAPGTGKTAVGLHRAAYLLYLHRERlrrsGVLIVGPNR 233
                 45899*************988888877666556666777776665 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00033      0.46       7      65 ..     181     234 ..     175     305 .. 0.73
   2 ?    0.5   0.3       0.3   4.2e+02     219     228 ..     433     442 ..     422     486 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00033
      AAA_11   7 reaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNa 65 
                  e ++  l  s   ++qG PGtgKT + ++  ++ll     ++e+ +   +L+ +p  a
  KIR64671.1 181 DELVRADLAAS--ICVQGAPGTGKTAVGLHRAAYLLY---LHRERLRRSGVLIVGPNRA 234
                 55555555555..48**********888888888843...3457788888888887554 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.3
      AAA_11 219 dvviIDEAaq 228
                 d+v++DEAa 
  KIR64671.1 433 DAVLVDEAAG 442
                 6666666664 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.006       8.2       5      23 ..     189     207 ..     185     273 .. 0.68
   2 ?    3.6   0.0     0.053        73      93     117 ..     451     474 ..     427     482 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.006
      AAA_22   5 agilvvtGesGtGKTtllr 23 
                 a +++v G +GtGKT +  
  KIR64671.1 189 AASICVQGAPGTGKTAVGL 207
                 56899**********9854 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.053
      AAA_22  93 elliiDEaqhlrseealeeLrslln 117
                 + +++DEaq l s+ + + + ++++
  KIR64671.1 451 GHVVVDEAQDL-SPMQCRAIARRSE 474
                 679********.8777777766665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       5.7   7.8e+03      92     132 ..      25      68 ..      12      75 .. 0.49
   2 ?   13.3   0.1   5.7e-05     0.079      25     137 ..     190     301 ..     172     307 .. 0.57
   3 ?    2.4   0.2      0.13   1.8e+02      69     150 ..     375     464 ..     339     490 .. 0.61
   4 ?   -1.0   0.0       1.5     2e+03     106     128 ..     607     655 ..     478     662 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.7
      AAA_16  92 aeleawrekleealaavpelagaea..srllellkrll.allsr 132
                 a+l++ re+ e+ +a + ++ag++   + l ++l+r + +l+ +
  KIR64671.1  25 AALARMRERTEALFATGHNVAGDAYtaETLGRTLSRRVaELADQ 68 
                 35555555555555544444444334455555555555444444 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 5.7e-05
      AAA_16  25 elvllsGesGvGKsslv..rellr...alekd....ggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleealaavpelag 113
                  ++ + G++G+GK+++   r  +    +l ++     g+++ g ++ +   ++y+a ++ al +   ++q   e   ++ ++ + +  e  a v+  a 
  KIR64671.1 190 ASICVQGAPGTGKTAVGlhR--AAyllYLHRErlrrSGVLIVGPNRAF---LSYIAaVLPALGE-VEVEQATVE---DLIARVPVRTVEDPA-VA--AL 276
                 5789************9431..22122333334442255566666666...6664445555533.333333222...122222222222222.22..23 PP

      AAA_16 114 aeasrllellkrll.allsrderpl 137
                 ++  r++e+l+r++ a+++ +++p+
  KIR64671.1 277 KHDARMAEVLRRAVeARIAAPAEPI 301
                 3339*********998888878865 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.13
      AAA_16  69 y.salaqalareellrqlldeaesaeleawrekleeala......avpelagaea..srllellkrll.allsrderplvlvlDdlqwadea 150
                 + +a++ al+ e+l+  ll++++   l+a+++  +++++      a p+ ++++   ++  ++l + +  ll+r++    +v+D++q++ ++
  KIR64671.1 375 FlDAVWPALTPEGLVHGLLADPAV--LAAAADGVLTEAEqalltwAKPPRTPKATkwTAADAVLVDEAaGLLERPAGFGHVVVDEAQDLSPM 464
                 335589999999999999999433..344444344444445666755666666667844444444444466666666667999999977664 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.5
      AAA_16 106 a..........................avpelagaeasrllellkrlla 128
                 a                          a+ ++++ + +rl+ +l+r+++
  KIR64671.1 607 AparvtvvpatlvkgleydhvvtvepaAIVAAEPRGLHRLYVVLTRAVS 655
                 0222223333444444455444444334444444444666666666664 PP

>> MEDS  MEDS: MEthanogen/methylotroph, DcmR Sensory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.5   6.2e+03      40      93 ..      20      64 ..      11      83 .. 0.53
   2 ?    0.4   0.1      0.38   5.2e+02      38      98 ..     271     328 ..     261     356 .. 0.72
   3 ?   11.0   0.1    0.0002      0.27       8      58 ..     553     603 ..     529     631 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.5
        MEDS 40 ldelrealrkagldvdaalesgqleildaeetylrgggfdpermlealrralak 93
                ld+ r+al+         +++++ e l a+   ++g ++ +e   ++l+r++a+
  KIR64671.1 20 LDASRAALA---------RMRERTEALFATGHNVAGDAYTAETLGRTLSRRVAE 64
                333333333.........333333333333344555555555555555555555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.38
        MEDS  38 stldelrealrkagldvdaalesgqleildaeetylrgggfdpermlealrralakaladg 98 
                   +++l++  r a++   a++++     ++ae +++++g+f++   l+ l+r++++++++g
  KIR64671.1 271 PAVAALKHDARMAEVLRRAVEARI---AAPAEPIMVSDGSFRWRIGLDPLHRVVEETRREG 328
                 455666666666666555555554...6688889999999999999999999999988663 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.0002
        MEDS   8 edeeellealvpfikaglargekvlyvasastldelrealrkagldvdaal 58 
                 ++ ++l++a+v+ ++a+la++  v ++a ++ +  lr+al++ag+d + a 
  KIR64671.1 553 RTVDDLVAATVAEVRAALAHDGSVGVIAADDAVGGLRAALADAGIDTATAD 603
                 56789****************************************988754 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00045      0.62      15      69 ..     190     245 ..     177     269 .. 0.80
   2 ?   -0.2   0.0      0.51   7.1e+02     123     143 ..     451     471 ..     431     481 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00045
                 CEEEEEESTTSSHHHHHHHHHHHHHHHS.TTSTS-EEEEEESSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  15 gdvlvaaeTGsGKTlaflipvlqivyet.kgktgpkalivePtreLaeqtlnnlkk 69 
                  +++v+++ G+GKT++ l  +   +y + ++ ++  +liv P r+    ++  l  
  KIR64671.1 190 ASICVQGAPGTGKTAVGLHRAAYLLYLHrERLRRSGVLIVGPNRAFLSYIAAVLPA 245
                 5899**************999999998878899999*******9988777666655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.51
                 EEEEEETHHHHHHTTTHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
        DEAD 123 rflVlDEadrlldqgfsdfin 143
                   +V+DEa+ l+ ++ +   +
  KIR64671.1 451 GHVVVDEAQDLSPMQCRAIAR 471
                 56999**99999886665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 4806.16
//
Query:       KIR64672.1  [L=193]
Description: ArsR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-14   52.6   1.1    6.7e-14   51.7   0.4    1.8  2  HTH_20         Helix-turn-helix domain
    4.1e-11   42.6   0.0      7e-11   41.8   0.0    1.4  1  HTH_5          Bacterial regulatory protein, arsR family
    1.8e-06   27.7   0.5    4.1e-06   26.5   0.1    1.8  2  HTH_IclR       IclR helix-turn-helix domain
      4e-06   26.6   0.1    9.8e-06   25.4   0.1    1.8  1  MarR_2         MarR family
    4.9e-05   23.6   0.0    8.6e-05   22.8   0.0    1.3  1  FaeA           FaeA-like protein
    0.00012   21.9   0.0    0.00021   21.2   0.0    1.3  1  MarR           MarR family
    0.00032   20.2   0.0    0.00056   19.4   0.0    1.4  1  HTH_24         Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.013   15.3   0.8      0.048   13.5   0.0    2.3  3  HTH_10         HTH DNA binding domain
      0.015   15.1   0.0      0.031   14.2   0.0    1.5  1  TrmB           Sugar-specific transcriptional regulator TrmB
      0.016   15.3   0.0      0.038   14.1   0.0    1.7  1  HTH_28         Helix-turn-helix domain
      0.022   14.5   0.0      0.062   13.1   0.0    1.8  1  LexA_DNA_bind  LexA DNA binding domain
      0.025   14.7   0.0      0.038   14.2   0.0    1.3  1  HTH_34         Winged helix DNA-binding domain
      0.042   14.3   0.0        0.1   13.1   0.0    1.6  1  HTH_27         Winged helix DNA-binding domain
      0.074   13.0   0.0       0.14   12.2   0.0    1.4  1  Dimerisation2  Dimerisation domain
      0.082   12.9   0.0       0.39   10.7   0.0    2.0  2  HTH_Crp_2      Crp-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.4   5.6e-17   6.7e-14       2      59 ..      17      75 ..      16      76 .. 0.95
   2 ?   -3.0   0.0       6.8   8.1e+03       7      15 ..     164     172 ..     152     172 .. 0.73

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 5.6e-17
                HHHHHHS-HHHHHHHHHH.STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECT CS
      HTH_20  2 qiaeALahPvRrrilraL.araegltaselaerldlskntlsyHLrvLeeagLvevvre 59
                q+ +ALahP R++i+ +L + + g+ta+e ae  +ls++  syHLr+L++ gLve+  +
  KIR64672.1 17 QVMRALAHPARLAIMEHLaSIESGATATECAEIAGLSPSATSYHLRALAKFGLVEQAPS 75
                7889***************************************************8765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.8
                 HS-HHHHHH CS
      HTH_20   7 LahPvRrri 15 
                 L  P Rrr+
  KIR64672.1 164 LMAPYRRRV 172
                 667888886 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   5.8e-14     7e-11       1      46 [.      24      71 ..      24      72 .. 0.94

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 5.8e-14
                SHHHHHHHHHHTT.SS.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  1 dptRlkILklLae.ge.lcvcelaeelglsqstvShHLkkLreaGLVe 46
                +p+Rl I+  La+ ++ ++++e+ae+ gls+s++S+HL++L + GLVe
  KIR64672.1 24 HPARLAIMEHLASiESgATATECAEIAGLSPSATSYHLRALAKFGLVE 71
                599**********9556******************************7 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       7.2   8.6e+03       8      13 ..      18      23 ..      17      24 .. 0.48
   2 !   26.5   0.1   3.5e-09   4.1e-06       6      51 ..      28      73 ..      27      74 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.2
                HHCT-C CS
    HTH_IclR  8 iLdala 13
                +++ala
  KIR64672.1 18 VMRALA 23
                455554 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 3.5e-09
                HHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR  6 laiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                lai+++la+   + t +e A+ +gl++S+++ +L+ L + G+veq 
  KIR64672.1 28 LAIMEHLASIESGATATECAEIAGLSPSATSYHLRALAKFGLVEQA 73
                79******************************************96 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   8.2e-09   9.8e-06       6      61 ..      26      80 ..      11      81 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 8.2e-09
                HHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
      MarR_2  6 aqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61
                a + ++ +L+  + +  t++e a+  gls+sa+s++l+ L + GLve+ p+ +D+R
  KIR64672.1 26 ARLAIMEHLASIESG-ATATECAEIAGLSPSATSYHLRALAKFGLVEQAPSRGDAR 80
                455555555555554.6**************************************9 PP

>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   7.2e-08   8.6e-05       5      52 ..      30      77 ..      27      86 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 7.2e-08
                HHHHHHH.S----HHHHHHHHTS-HHHHHHHHHHHHHHSSEEEE--SS CS
        FaeA  5 IleylnsikapckTreiAdalglsaYQaRyYLeqLekegkikrspvrr 52
                I+e+l si+++++ +e A+ +gls     y L  L k g ++++p r 
  KIR64672.1 30 IMEHLASIESGATATECAEIAGLSPSATSYHLRALAKFGLVEQAPSRG 77
                9*******************************************9885 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.7e-07   0.00021       7      58 ..      29      81 ..      25      81 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.7e-07
                HHHHHHHHSTT.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR  7 viLrilyeqgp.lsvseLakklgvskstvtrvldrLekkGlieRskspeDrRe 58
                 i++ l++ ++ ++ +e a+  g+s+s+++  l++L k Gl+e  +s +D Re
  KIR64672.1 29 AIMEHLASIESgATATECAEIAGLSPSATSYHLRALAKFGLVEQAPSRGDARE 81
                5666677777669999************************************7 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   4.7e-07   0.00056       5      47 ..      27      70 ..      25      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.7e-07
      HTH_24  5 drkILelLqk.nprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                +++I+e L   +++ + +e Ae  glSps+++++l+ L + Gl+
  KIR64672.1 27 RLAIMEHLASiESGATATECAEIAGLSPSATSYHLRALAKFGLV 70
                578999999999**************************998877 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.7   5.6e+03      39      49 ..      29      39 ..      27      40 .. 0.81
   2 ?   13.5   0.0     4e-05     0.048      24      46 ..      41      63 ..      36      66 .. 0.91
   3 ?   -1.3   0.2       1.6     2e+03       1      13 [.     149     161 ..     149     163 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.7
      HTH_10 39 tlsehLrkaes 49
                +++ehL ++es
  KIR64672.1 29 AIMEHLASIES 39
                67899999886 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 4e-05
      HTH_10 24 vtlkeLAkelGIskstlsehLrk 46
                +t+ e A++ G+s+s++s+hLr+
  KIR64672.1 41 ATATECAEIAGLSPSATSYHLRA 63
                789999***************97 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.6
      HTH_10   1 LTdkqlevlklAy 13 
                 LT  +l +l +A+
  KIR64672.1 149 LTAEELLALNEAV 161
                 8999*****9997 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.6e-05     0.031      21      67 ..      39      89 ..      33      90 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.6e-05
                CCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST....TTEEEE--H CS
        TrmB 21 gpatadeiaeelgvprskvYevLrsLedkGlVerekgr....pklYravdp 67
                  ata+e ae++g++ s     Lr L + GlVe  ++r     ++ ra +p
  KIR64672.1 39 SGATATECAEIAGLSPSATSYHLRALAKFGLVEQAPSRgdarERVWRAFSP 89
                679*******************************99988877777777666 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.2e-05     0.038       2      42 ..      27      70 ..      26      80 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.2e-05
      HTH_28  2 Rleiikllaa...GhsvreaArelgisrrtvyrWikryeegGia 42
                Rl i+++la+   G +++e+A++ g+s++  +  ++++ ++G+ 
  KIR64672.1 27 RLAIMEHLASiesGATATECAEIAGLSPSATSYHLRALAKFGLV 70
                899999*99754477****************9999999999974 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.2e-05     0.062      28      62 ..      43      76 ..      26      80 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.2e-05
                   HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GGG- CS
  LexA_DNA_bind 28 ireiaralglkSpsaveehLkaLerKGyierdpgk 62
                     e a+  gl+ psa   hL+aL++ G++e  p +
     KIR64672.1 43 ATECAEIAGLS-PSATSYHLRALAKFGLVEQAPSR 76
                   55667777775.******************99976 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.2e-05     0.038       2      45 ..      27      71 ..      26      85 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.2e-05
      HTH_34  2 RlavlsyLas.vdeadfvelkealeatdgnLsvhlkkLekagYie 45
                Rla++  Las ++ a+++e  e  +++ ++ s hl++L k g +e
  KIR64672.1 27 RLAIMEHLASiESGATATECAEIAGLSPSATSYHLRALAKFGLVE 71
                9*********9999**************************99887 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.6e-05       0.1      16      61 ..      38      83 ..      25      86 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.6e-05
      HTH_27 16 rrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekr 61
                + ++++++ ++   ++ s++sy l++L + GLve+ +++ d re+ 
  KIR64672.1 38 ESGATATECAEIAGLSPSATSYHLRALAKFGLVEQAPSRGDARERV 83
                45667788888899999**********************9999875 PP

>> Dimerisation2  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00012      0.14      17      65 ..      24      73 ..      17      84 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
  Dimerisation2 17 tAceLgvFdlLke.eeplsaeevaeelgasvkGterLldacvaLgLLere 65
                     ++L++ + L++ e+  +a e ae  g+s+++t+  l+a++ +gL e+ 
     KIR64672.1 24 HPARLAIMEHLASiESGATATECAEIAGLSPSATSYHLRALAKFGLVEQA 73
                   557899****************************************9965 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.4   1.7e+03      54      67 ..       9      21 ..       6      22 .. 0.76
   2 ?   10.7   0.0   0.00032      0.39      18      53 ..      37      72 ..      22      83 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.4
                TEEEEES-HHHHHH CS
   HTH_Crp_2 54 grririldleaLra 67
                +r ++i d++ +ra
  KIR64672.1  9 QR-VTISDPQVMRA 21
                34.9****998887 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00032
                EEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE CS
   HTH_Crp_2 18 ielpltqeelAsmlGltretvsrilseLkreglisr 53
                ie   t +e A++ Gl+++ +s  l++L + gl+++
  KIR64672.1 37 IESGATATECAEIAGLSPSATSYHLRALAKFGLVEQ 72
                5566788999***********************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1362.42
//
Query:       KIR64673.1  [L=401]
Description: hypothetical protein TK50_03340 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-34  118.6  20.6    4.4e-34  118.1  20.6    1.2  1  Peptidase_S8  Subtilase family
    4.8e-08   33.6   0.0      1e-07   32.5   0.0    1.6  1  Inhibitor_I9  Peptidase inhibitor I9


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.1  20.6   4.9e-38   4.4e-34       2     281 ..     154     380 ..     153     395 .. 0.87

  Alignments for each domain:
  == domain 1  score: 118.1 bits;  conditional E-value: 4.9e-38
                   TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-SS CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   2 kgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvld 98 
                   +gv v v+DtGv  +h dl                 g+ + g d    ++n+a+d+ng    HGt vA++aa++      + gva +a++ +v+vld
    KIR64673.1 154 NGVRVYVVDTGVRVTHQDLG----------------GRAVSGYD-AVDNDNNADDGNG----HGTFVASVAAGT------AYGVAKNATVVGVRVLD 223
                   69999*************99................33344444.4556777889999....************......9**************** PP

                   TTSB-HH..HHHHHHHHHHHHCT-S..EEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  99 tsggsmetgteliraieeaaedkvd..vinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvgay 193
                   +sg+  +  +++i++i+++  +  +  v n+slg +    + +      a++r +   gv + i+aGN+g       + +++ +p+  ++++tvga+
    KIR64673.1 224 NSGSGTT--AGVIAGIDWVTANATRpaVANLSLG-GGASTTLDA-----AVRRSI-AAGVTYSIAAGNSG-------VPATGTSPARVTEALTVGAT 304
                   **98764..9********988666566*******.444444443.....999***.89************.......899***************** PP

                   STTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 194 ttegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntA 281
                   ++ +  a++S++G +       d+ apG++i + w + ++++       + sGTS+A+P++agaaA+ l  +p  +p+tv aa++ + 
    KIR64673.1 305 DQTDTRASWSNYGTAL------DLFAPGVSITAAWRTSDTAT------YTGSGTSFAAPHVAGAAAIYLRNNPTASPATVNAAIVAAG 380
                   **************99......6************9999544......4779********************************9765 PP

>> Inhibitor_I9  Peptidase inhibitor I9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.1e-11     1e-07       2      80 ..      55     121 ..      54     123 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 1.1e-11
                   EEEEE-TTS-HHHHHHHHHHHHH....HHHHTT..--EEEEEEESSSSSEEEEEE-GGGHHHHHTSTTEEEEEEEEEEE CS
  Inhibitor_I9   2 YIVtfkeaakaakkassheswhqsllksvlkgedsakagilysYkilfnGfavklteeqaeklrkrpeVesVepDqsvr 80 
                   Y V++ke+  + +  +  e + +       +    ++ ++ + Y   +nG +++lte  a +l+++p V++Ve+Dq v+
    KIR64673.1  55 YLVVLKEGQRPDR--ARAEALTS-------R---YGNGRVDRVYGRTVNGWSAHLTERAARRLAADPAVAYVEQDQRVQ 121
                   6777776444444..22222333.......2...34899*************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2849.12
//
Query:       KIR64674.1  [L=283]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-74  251.2   0.0    1.4e-74  251.0   0.0    1.0  1  VitK2_biosynth  Menaquinone biosynthesis


Domain annotation for each model (and alignments):
>> VitK2_biosynth  Menaquinone biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.0   0.0   7.6e-79   1.4e-74       2     266 .]       9     266 ..       8     266 .. 0.95

  Alignments for each domain:
  == domain 1  score: 251.0 bits;  conditional E-value: 7.6e-79
                     EEEEESSHHHHHHHHHHHTTSS..SGCCEEEEEE-HHHHHHHHHTTS-SEEEEEHHHHTTCTTTEEEESEESCEEEESSSSEEEEESS-CCC-SS CS
  VitK2_biosynth   2 rlGhspylNdlflfyaLvegkvdsegleveivledpetlnrallegelDvakiSsaayariaddyalLpdlsisalGrvygvllvskvpleeleg 96 
                     r+Gh+++lN+l+++++L   + +++ ++v++ ++ p++l +al++g+lD+++iS ++y+r+ad++ lLpdl+++++G+v++v++vs++pl+el g
      KIR64674.1   9 RVGHIQFLNCLPIYWGL---MRSGALIDVDLHKDSPDRLSAALVAGDLDIGPISHVEYLRHADELLLLPDLAVGSDGPVLSVNMVSTKPLAELGG 100
                     8****************...33344899******************************************************************9 PP

                     S.T.EEEESTTTSHHHHHHHHHHCSTS----EEEEE-GGGHHHHHHTTSSEEEEECCHHH...TGGGGTTEEEEEHHHHHHHHHSS-EEEEEEEE CS
  VitK2_biosynth  97 elgkrvalpgestTsvlLlrlllaeryglkprlvevpfdeieaavlegedagLlIgesal...tyaeeglkkvlDLgelWeeltglPlvlglwvv 188
                         rval ++s+T vlL+rlll eryg++p++ ++p +++ + +l ++dag+lIg+ al    +a ++  +v+DLg++W+++tglP+v+++w+v
      KIR64674.1 101 G---RVALGSTSRTGVLLARLLLGERYGVHPDYFRCP-PDLTQ-MLLEADAGVLIGDVALralYEAPQRGLEVTDLGQAWRDWTGLPMVFAVWAV 190
                     9...*********************************.*****.66666***********998555666899*********************** PP

                     ECCCHH...HHHHHHHHHHHHHHHHHHHSHHHHHHHHHCCSTTS.HHHHHHHHHHHCSHHHHS-CHHHHHHHHHHHHHHHC CS
  VitK2_biosynth 189 rrdlaa...eaakeleealreSveyalahldevaeyaaeraqemddevlekhlelYvnelsydlgeegragleeflelaae 266
                     rrd+aa     +ke++ea+ +S++  la+ld+vae+aa++++++     +++l  Y++ l+++lge++ agl+ef+++aae
      KIR64674.1 191 RRDFAAahpGLVKEVHEAFLRSRDLCLAELDQVAEAAARWESFD-----AATLATYFRALDFSLGERQVAGLREFARRAAE 266
                     ***998899999********************************.....*****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       190  (0.0105974); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1852.32
//
Query:       KIR64675.1  [L=320]
Description: hypothetical protein TK50_03350 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-05   23.4   0.0      0.049   13.2   0.0    2.2  2  Beta-lactamase2  Beta-lactamase enzyme family
  ------ inclusion threshold ------
       0.12   11.8   0.0       0.16   11.3   0.0    1.2  1  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00023         2       3      38 ..     112     149 ..     110     157 .. 0.81
   2 !   13.2   0.0   5.4e-06     0.049      73     185 ..     159     272 ..     155     275 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00023
                      TTSEE.EESTTS-EE-GGGGHHHHHHHHHHHHHC.TST CS
  Beta-lactamase2   3 tgeel.gvnadeefpaaStiKvpillalleavle.gkl 38 
                      tg+++ + n de+  +aS+iK +i++ +l++ +e g+ 
       KIR64675.1 112 TGKIIgSKNMDETSTTASLIKSWIVADYLRRTDEqGQK 149
                      7888866799***************9999999973444 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 5.4e-06
                      HHHHHTT-HHHHHHHHHHHTHHHHHHHHHHCTHTTSB--SHTTCCHHHTTSSTTEE-HHHHHHHHHHHHHTTSSHHHHHHHH......HHT-ST CS
  Beta-lactamase2  73 tlmiavSDNtAtnlLidrlgleavnawlkelglretrlrrklpdleaadkdkrntttardlarllealargellspeellei......lsnqqf 160
                      t+ i +SDNt +   ++ +g  a  +++ +  +++t  +   p+  a     r  +++rd arl + +  g++  pe   ++      l +   
       KIR64675.1 159 TRIIRDSDNTRAEQFYNTVGRSASIKRMISI-CKTTDSS---PA--ADGGWSRTNLSPRDTARLGACIKDGRAAGPE-WTKWlinemrLVRGSG 245
                      6778999999999999999966666666663.6666544...33..3447889***********************7.4444334434446777 PP

                      TTTTTTTTT..TTSEEEEEEEEETTEE CS
  Beta-lactamase2 161 rdrlaaglp..egvrvahKtGeldgvr 185
                      + ++++ +p  e+ ++a K G++d++r
       KIR64675.1 246 DFGIRKAFPaaEQKKIAIKNGWIDRTR 272
                      888999999**************9987 PP

>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.8e-05      0.16      16      43 ..     105     132 ..      93     190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.8e-05
                    EEEEETTTTEEEEEESTTS-BE-GGGHH CS
  Peptidase_S11  16 ailvdantGkvLyeknadevveiASltK 43 
                    + ++d  tGk++ +kn de    ASl K
     KIR64675.1 105 WSVLDTRTGKIIGSKNMDETSTTASLIK 132
                    6789*********************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2131.40
//
Query:       KIR64676.1  [L=317]
Description: hypothetical protein TK50_03355 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2099.81
//
Query:       KIR64677.1  [L=355]
Description: phenylacetate-CoA oxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-103  346.0   0.3   1.4e-103  345.7   0.3    1.0  1  PaaA_PaaC  Phenylacetic acid catabolic protein


Domain annotation for each model (and alignments):
>> PaaA_PaaC  Phenylacetic acid catabolic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.7   0.3  7.5e-108  1.4e-103       2     261 .]      60     334 ..      50     334 .. 0.98

  Alignments for each domain:
  == domain 1  score: 345.7 bits;  conditional E-value: 7.5e-108
                 ............HHHHHHHHHHHHHHHHHHHHHHTTTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS.-HHHHHHC--CCC----CGGGS-- CS
   PaaA_PaaC   2 ieakdwmpeeyrkalirlllqlAdselilaqresewigrAPsLeediallnivlDelGharllysaaeelegkgkdeddlaflrdegefknsllvelpn 100
                 ie++dwmpe+yr++lir+++q+A+se+i++q+e++wi+rAPsL+++++ll++v+De+Gh+++ly+aae+l   g+++d+l++l+ +g++k+s+++++p+
  KIR64677.1  60 IEPRDWMPEAYRRTLIRQIAQHAHSEIIGMQPEGNWISRAPSLKRKAILLAKVQDEAGHGLYLYAAAETL---GVSRDELVQLLLDGRQKYSSIFNYPT 155
                 799*******************************************************************...************************** PP

                 -SHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHGGGGGGGG---HHH.....HHHHH CS
   PaaA_PaaC 101 gdwadtivrqflvdaaaiilleaLkrssygplaaiaakvlkEesyHlrhgeewvlrLgdGteeskrrvqeAlnrlwpyvlelfgpddae.....ealae 194
                  +wad++v+++lvd+aai+++ +L+r+sygp+a+++ +v+kEes+H+r+g+e++ +L++Gt e+k+++q+A++r+w ++l +fgp+d +     +++a+
  KIR64677.1 156 LSWADVGVIGWLVDGAAIVNQVPLCRCSYGPYARAMIRVCKEESFHQRQGYEILHTLAHGTSEQKAMAQDAVDRWWYPSLAMFGPPDGDsthsaRSMAW 254
                 *************************************************************************************************** PP

                 TTSS--GGGGHHHHHHHHHHHHHHTT-----S------GGGT---TTHHHH................HHHHHHHHHHSTT--- CS
   PaaA_PaaC 195 kgkavdndeLrqkfeakvvpvleeagltlPdepalkeggkqGehsehlgel................laelqalqrahpeaaW 261
                 k+k+ +ndeLrq+f++++v+++e +gltlPd p+l+++++++ +++  +e                 ++++++++rah e+aW
  KIR64677.1 255 KIKRFSNDELRQRFVDMCVQQAEILGLTLPD-PDLRWNEQRQAYDF--TEPdyaelmrvisgegpcnRQRMEHRRRAHAEGAW 334
                 ******************************9.************99..55556999*************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2476.44
//
Query:       KIR64678.1  [L=97]
Description: phenylacetate-CoA oxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-39  131.8   0.0    9.3e-39  131.6   0.0    1.0  1  PaaB      Phenylacetic acid degradation B


Domain annotation for each model (and alignments):
>> PaaB  Phenylacetic acid degradation B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0   5.2e-43   9.3e-39       3      87 ..       9      93 ..       8      95 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 5.2e-43
        PaaB  3 plfEVfkrdkeglshqhvgSvhAadaemALlvArdvfvRReeavslwvvkseailastpeekeslfapakektYrhqtyYgvvee 87
                pl+EVf+r ++gl+h+hvgS+hA+dae+AL++Ard+++RR+e+vs+wvv+++ai+as+p+ek+++f+pa++k+Yrh+t+Y+v++ 
  KIR64678.1  9 PLWEVFVRARRGLAHTHVGSLHAPDAELALRNARDLYTRRQEGVSIWVVPAAAITASSPDEKDAFFDPAADKVYRHPTFYEVPDG 93
                79********************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 716.08
//
Query:       KIR64679.1  [L=241]
Description: phenylacetic acid degradation protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-87  290.8   0.2    9.4e-87  290.5   0.2    1.1  1  PaaA_PaaC  Phenylacetic acid catabolic protein


Domain annotation for each model (and alignments):
>> PaaA_PaaC  Phenylacetic acid catabolic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.5   0.2   5.2e-91   9.4e-87      17     261 .]       5     241 .]       1     241 [] 0.98

  Alignments for each domain:
  == domain 1  score: 290.5 bits;  conditional E-value: 5.2e-91
                 HHHHHHHHHHHHHHHHHHHTTTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS.-HHHHHHC--CCC----CGGGS---SHHHHHHHHHHHHH CS
   PaaA_PaaC  17 irlllqlAdselilaqresewigrAPsLeediallnivlDelGharllysaaeelegkgkdeddlaflrdegefknsllvelpngdwadtivrqflvda 115
                 +++ l l+d++l+ aqr++ew++rAP++eed+al+ni+lD+lG arll+++a+eleg+g+ded+la+lrd++ef+n+llvelpngd+a t++  ++++a
  KIR64679.1   5 FDFALALGDDALVAAQRLGEWTSRAPEMEEDVALANIALDQLGAARLLLTYAGELEGAGRDEDALAYLRDDREFRNCLLVELPNGDFAVTMAKLLFLSA 103
                 678899********************************************************************************************* PP

                 HHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHGGGGGGGG---HHHHHHHHTTSS--GGGGHHHHHHHHHH CS
   PaaA_PaaC 116 aaiilleaLkrssygplaaiaakvlkEesyHlrhgeewvlrLgdGteeskrrvqeAlnrlwpyvlelfgpddaeealaekgkavdndeLrqkfeakvvp 214
                 +++ l++aL+ + +++laai ak+ kE +yH++h++ wv+rLgdGt+es+rr+q+A++++wpy++elf+p        + g  vd++ Lr +f+a v p
  KIR64679.1 104 YQLPLYSALAGCADERLAAIGAKARKESAYHRDHAALWVRRLGDGTAESHRRMQAAVDQVWPYAHELFAP--------WPGAPVDPAGLRGDFDAYVGP 194
                 ********************************************************************98........7789***************** PP

                 HHHHTT-----S------GGGT---TTHHHHHHHHHHHHHHSTT--- CS
   PaaA_PaaC 215 vleeagltlPdepalkeggkqGehsehlgellaelqalqrahpeaaW 261
                 vl+ea+lt P++ ++  gg++G h+ehl++llae+q l+rahp+a+W
  KIR64679.1 195 VLAEATLTRPADGWAPAGGRDGVHTEHLSYLLAEMQVLHRAHPGATW 241
                 *********************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1792.46
//
Query:       KIR64680.1  [L=167]
Description: phenylacetate-CoA oxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-11   44.7   1.0    1.9e-11   43.9   1.0    1.3  1  FeS_assembly_P  Iron-sulfur cluster assembly protein
     0.0021   18.0   2.6     0.0039   17.1   2.6    1.4  1  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
     0.0063   16.2   2.4      0.012   15.3   1.4    1.9  2  Zn_Tnp_IS1      InsA N-terminal domain
  ------ inclusion threshold ------
       0.02   15.0   0.8        6.5    7.0   0.1    2.6  2  Zn-ribbon_8     Zinc ribbon domain
        1.3    8.8   6.5        1.5    8.6   1.6    2.3  2  Rubredoxin_2    Rubredoxin metal binding domain


Domain annotation for each model (and alignments):
>> FeS_assembly_P  Iron-sulfur cluster assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   1.0   5.4e-15   1.9e-11       6      63 ..       6      67 ..       5      78 .. 0.90

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 5.4e-15
                    HHHTT-B-TTTS.SBCCCCT---EEEE-T..-EEEEEE--SSTT-TTHHHHHHHHHHHHC.. CS
  FeS_assembly_P  6 aaLrtVtDPelg.vdlvslglvreidieg..gkVsvditltypacslaeairadaeaalr.a 63
                    +a + V+DPe+  +++ +lg +r+++ +   g+V+v+it+ty +c++++ irad+++al+ a
      KIR64680.1  6 EAVAAVVDPEIRvITIDELGILRAVEKDPatGRVTVTITPTYTGCPAMDVIRADIRRALAaA 67
                    78899*******9**********************************************943 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   2.6   1.1e-06    0.0039      19      45 ..     127     159 ..     121     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.1e-06
  Zn_Tnp_IS1595  19 fvCPhCgsrkayrikt......rglfqCkeCrk 45 
                    ++CP Cgs++  ++++        l++C++Cr+
     KIR64680.1 127 VRCPLCGSAETEQVSRfgstacKALWRCRACRE 159
                    67*******99999999999***********95 PP

>> Zn_Tnp_IS1  InsA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.57   2.1e+03      11      18 ..      50      57 ..      40      59 .. 0.79
   2 !   15.3   1.4   3.4e-06     0.012       4      35 .]     125     158 ..     123     158 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.57
  Zn_Tnp_IS1 11 CsstdVyR 18
                C + dV+R
  KIR64680.1 50 CPAMDVIR 57
                88899988 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.4e-06
  Zn_Tnp_IS1   4 VsihCPrCsstd...VyRhGkstagHeRfrCrdCk 35 
                   + CP C s++   V R G sta    +rCr C+
  KIR64680.1 125 LAVRCPLCGSAEteqVSRFG-STACKALWRCRACR 158
                 6799****9975557****9.89999********8 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0018       6.5      27      39 ..     126     140 ..     120     141 .. 0.80
   2 ?    6.0   0.1    0.0037        13       7      19 ..     153     165 ..     152     167 .] 0.88

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0018
  Zn-ribbon_8  27 ta.CPeCgs.evrrv 39 
                   + CP Cgs e+++v
   KIR64680.1 126 AVrCPLCGSaETEQV 140
                  455******888875 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0037
  Zn-ribbon_8   7 rCeeCghefevlq 19 
                  rC++C + f++l 
   KIR64680.1 153 RCRACREPFDHLK 165
                  8*********885 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2     0.038   1.4e+02      16      22 ..     128     134 ..     128     137 .. 0.83
   2 ?    8.6   1.6   0.00042       1.5       7      22 ..     144     159 ..     144     159 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.038
  Rubredoxin_2  16 rCpsCgs 22 
                   rCp Cgs
    KIR64680.1 128 RCPLCGS 134
                   8****98 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00042
  Rubredoxin_2   7 GfesakwfGrCpsCgs 22 
                   G+++ k ++rC++C++
    KIR64680.1 144 GSTACKALWRCRACRE 159
                   6788899*******85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1128.02
//
Query:       KIR64681.1  [L=373]
Description: phenylacetic acid degradation protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-15   55.8   0.0    9.9e-15   55.1   0.0    1.3  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    1.2e-13   50.7   0.2    2.1e-13   50.0   0.2    1.4  1  Fer2           2Fe-2S iron-sulfur cluster binding domain
    1.8e-12   47.5   0.0    2.9e-12   46.8   0.0    1.3  1  FAD_binding_6  Oxidoreductase FAD-binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   1.6e-18   9.9e-15       2     107 ..     138     245 ..     137     247 .. 0.95

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 1.6e-18
                    EEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH...HSSTTEE CS
  NAD_binding_1   2 iagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells...lkkeeth 94 
                    +a+G+Gi+Pv++++ ++l+  ++    +lvyGnrt +++++ eel  l+ ++p rl++v+v+sre+ ++    gr++++ l  ll+     ++ + 
     KIR64681.1 138 VAAGSGITPVLALVATALAV-EPASTFTLVYGNRTANSVMFAEELADLKDRYPTRLHLVHVLSREPGESPLLSGRIDADRLGRLLGtivPGDAIEE 232
                    89*****************7.999*******************************************************99999999876788899 PP

                    EEEECSHHHHHHH CS
  NAD_binding_1  95 vyvCGppgMikav 107
                     ++CGp gM+ ++
     KIR64681.1 233 WFLCGPYGMVVDA 245
                    9********9776 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.2   3.5e-17   2.1e-13       3      78 .]     290     363 ..     288     363 .. 0.91

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 3.5e-17
                 TTTEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESCE.CTTSSSSTHHHHHTTEEEEGGGSEES CS
        Fer2   3 idgkevevevadgettlldaaeenggidipysCggggCgtClvevlegev.qsdetelegeeldegklrlaCqtivt 78 
                 +dg+  +++   +e+ +ldaa +    ++py+C+gg C+tC+++v++g v  + + +le +e ++g++ l+Cq+ +t
  KIR64681.1 290 LDGRASTFPMGREER-VLDAALRV-RGELPYACKGGVCSTCRAKVVSGAVtMARNYALEPDEVAAGYV-LTCQSTPT 363
                 689999999999999.99999997.9************************866689******999888.****9986 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   4.8e-16   2.9e-12       3      97 ..      19     123 ..      17     125 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 4.8e-16
                    EEEEEEECCTTEEEEEEEESTTTS--.---TT-EEEEEEC.....ETTCCEEEEEE.BSSTT...ECCEEEEEEE--TT-HHHHHH.HCS-TT-EE CS
  FAD_binding_6   3 kltekeevsedtrifrfklpsekqkl.glpvGqhvflrlk.....ikgeaviRsYtpissen...ekGelellvkvypgGkmsqaL.delkigdtl 88 
                    +++++ +++ d   ++f++p+e   l  + +Gqh+ +rl+     ++g +v RsY+++s+++    +G+l + v+ +pgG++s +  + l+ gdt+
     KIR64681.1  19 PVAAVDRLTADAVAITFAVPEELRALfAFSAGQHLTVRLPansdhADGADVRRSYSICSTPDdlaRHGRLRIGVREVPGGAFSAYAcSVLRHGDTV 114
                    6888999*************998765279**********9877777899***********9645589******************9777******* PP

                    EEEEEE-SE CS
  FAD_binding_6  89 eikGPlGkf 97 
                    e+  PlG+f
     KIR64681.1 115 EVLPPLGHF 123
                    ********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2563.49
//
Query:       KIR64682.1  [L=234]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.3e-28   97.3   0.1    1.1e-27   96.7   0.1    1.2  1  adh_short     short chain dehydrogenase
    5.3e-17   62.2   0.4    7.6e-17   61.6   0.4    1.2  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
     0.0011   18.5   0.1     0.0014   18.1   0.1    1.1  1  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.1   1.9e-31   1.1e-27       2     191 ..       9     186 ..       8     189 .. 0.90

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 1.9e-31
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                  ++v+G s+GIG+a+ ++l+ +G++v+ ++rs+++l     e         + ++Dvtd    +++++ a + lg++++ +  AGi   g+f ++++ +
  KIR64682.1   9 RAIVVGNSDGIGLAVTRRLLDDGWTVAGLSRSSSPLTSSGYE---------HHRADVTDV-GYREVLAGALDTLGGVEACIYAAGI---GDFFDVDDLA 94 
                 589********************************9444444.........456899965.5778999999***************...4555555555 PP

                 .HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short 101 .wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                    r +evNl+g+  +++ v+p m ++ +G++v  sS a   p+a+ + Y+A Ka++ ++   l   l+p+g+rv++v  G+vdT+mak++ 
  KIR64682.1  95 aQTRALEVNLVGAARTMEVVVPSMARAGAGHVVGLSSLADVAPSAEAPGYAAGKAGLSSYLLGLGGALRPHGVRVSVVRFGFVDTKMAKARV 186
                 4789***********************************************************************************99865 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.4   1.3e-20   7.6e-17       3     183 ..      16     186 ..      14     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 1.3e-20
                   TTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH.-HHHHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpflet.sreefdra 98 
                     gIG a+ ++l + G++v+   ++ +       l+ + g e  ++DVtd    +++ + + +++g++  ++ +agi +       ++ + +   ra
    KIR64682.1  16 SDGIGLAVTRRLLDDGWTVAGLSRSSSP------LT-SSGYEHHRADVTDVG-YREVLAGALDTLGGVEACIYAAGIGDF-----FDVdDLAAQTRA 99 
                   57******************99988887......44.4577889*****986.67788888999*************998.....4442668889** PP

                   HHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGST CS
  adh_short_C2  99 ldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgik 183
                   l+vnl +++++++ ++p m++   g +v lss++     ++   y+a Ka+l +    l   l p+g+Rv +v  g+++T++a++  
    KIR64682.1 100 LEVNLVGAARTMEVVVPSMARAgaGHVVGLSSLADVAPSAEAPGYAAGKAGLSSYLLGLGGALRPHGVRVSVVRFGFVDTKMAKARV 186
                   *****************6665559*********8888888888***************************************98754 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   2.4e-07    0.0014       2     115 ..      11     131 ..      10     153 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.4e-07
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-...HHHHHHHHHHH.T-SEEEE--S---HHH..HHHSHHHHHHHHTHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltd...rsalerlfkee.qpdavihlAavggvaa..ssedpadfieknlqg 94 
                 +V+G +  iG a++++ll+ g++v gl+r ss   ++  e    +++d+td   r+ l+ ++++  +++a i +A++g+  +      +++ +e nl+g
  KIR64682.1  11 IVVGNSDGIGLAVTRRLLDDGWTVAGLSRSSSPLTSSGYE---HHRADVTDvgyREVLAGALDTLgGVEACIYAAGIGDFFDvdDLAAQTRALEVNLVG 106
                 79999999**********************7766665555...566666662226699*****9999*******8877765501233333344455555 PP

                 HHHHHHHHH....HHTCTEEEEEEE CS
   Epimerase  95 tlnlleaar....kagvkrllflsS 115
                 + + +e++     +ag+  ++ lsS
  KIR64682.1 107 AARTMEVVVpsmaRAGAGHVVGLSS 131
                 4444444333333445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1514.29
//
Query:       KIR64683.1  [L=219]
Description: hypothetical protein TK50_03390 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1529.63
//
Query:       KIR64684.1  [L=282]
Description: hypothetical protein TK50_03395 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-14   53.7   0.9    1.9e-14   53.7   0.9    3.4  3  HTH_31    Helix-turn-helix domain
    0.00048   20.1   0.1    0.00098   19.1   0.1    1.6  1  HTH_3     Helix-turn-helix
     0.0016   18.4   0.1     0.0024   17.8   0.1    1.3  1  HTH_19    Helix-turn-helix domain
     0.0063   16.4   0.2      0.016   15.0   0.2    1.8  1  HTH_25    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.087   12.8   0.0       0.22   11.5   0.0    1.6  1  HTH_37    Helix-turn-helix domain
      0.088   12.6   5.5      0.024   14.4   2.2    1.8  2  MdcG      Phosphoribosyl-dephospho-CoA transferase MdcG


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.9   6.3e-18   1.9e-14       2      64 .]      14      75 ..      13      75 .. 0.97
   2 ?   -0.6   0.1      0.57   1.7e+03      40      52 ..     158     170 ..     144     178 .. 0.78
   3 ?    1.9   0.3       0.1     3e+02       3      25 ..     185     250 ..     183     265 .. 0.74

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 6.3e-18
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerael 64
                LG +Lr+lR+++GL +++vA rl + +s+lsr+E+G +g  + a++++l+ ++g +++er +l
  KIR64684.1 14 LGGELRELRRKRGLPLRQVAIRLDWQPSKLSRMETGIQG-IQAADVASLLVIYGITGDERKRL 75
                8*************************************9.*******************9876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.57
      HTH_31  40 grpspavlealar 52 
                  rp+p +l al++
  KIR64684.1 158 SRPTPPALHALLD 170
                 4788888888876 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.1
      HTH_31   3 GalLralRera...........................................GLsqeevAerlg 25 
                 +++Lr+l e+a                                           GL +ee+A+ ++
  KIR64684.1 185 ARQLRHLVEAAerptvtlrvvplavgahtgldgsfalfdfprnrsvvyldhkltGLFLEEAAQVAH 250
                 678888888888888877777777777777777777777777777777777777777777777776 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   3.3e-07   0.00098       1      54 [.      18      71 ..      18      72 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.3e-07
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvslde 54
                l+elR ++gl ++++A +l+  +s +sr+E G++ +    +  l+  +g++ de
  KIR64684.1 18 LRELRRKRGLPLRQVAIRLDWQPSKLSRMETGIQGIQAADVASLLVIYGITGDE 71
                89******************************9999999999999999998776 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   8.1e-07    0.0024       4      62 ..      18      78 ..      15      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 8.1e-07
      HTH_19  4 LkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidle...yllqg 62
                L+e+R+++gl ++++a rl+  +sk+s  E+g +  + a ++ +++ ++gi+ +   +ll +
  KIR64684.1 18 LRELRRKRGLPLRQVAIRLDWQPSKLSRMETG-IQGIQAADVASLLVIYGITGDerkRLLAM 78
                9*******************************.34999999999999999987755566665 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   5.4e-06     0.016       2      33 ..      18      49 ..      17      60 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.4e-06
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEed 33
                Lr+ R++rgl l++va ++  +++ l ++E +
  KIR64684.1 18 LRELRRKRGLPLRQVAIRLDWQPSKLSRMETG 49
                9*****************************98 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.2e-05      0.22      22      54 ..      17      49 ..      11      66 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.2e-05
                HHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT CS
      HTH_37 22 aiaeliekrelsqseaaqllgiaqPkvsrllrg 54
                +++el++kr+l  +++a +l  + +k+sr++ g
  KIR64684.1 17 ELRELRRKRGLPLRQVAIRLDWQPSKLSRMETG 49
                689***************************965 PP

>> MdcG  Phosphoribosyl-dephospho-CoA transferase MdcG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.1   3.3e+03      29      63 ..       4      35 ..       1      62 [. 0.52
   2 ?   14.4   2.2     8e-06     0.024      39     111 ..     125     204 ..      94     215 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
        MdcG 29 aglpvvvrRakaedagae.vplGlrlppaarkqRla 63
                a+lp vv R    +  +     Gl+l    r++ + 
  KIR64684.1  4 ANLPTVVGRGLGGELRELrRKRGLPL----RQVAIR 35
                55666666655544433334445554....333333 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 8e-06
        MdcG  39 kaedagaevplGlrlppaarkqRlalavapsaiarvveplaLaaala.a.......aplaaraalaalaallaalglawgv 111
                 +++ a a v +G   p ++++ R+a+++ ++ai ++ +p+aL a+l+ a        p  ++++l++l +++++  ++++v
  KIR64684.1 125 TPDYAHA-VMVGCGVPLEDAQGRVAARLGRQAILSRPTPPALHALLDeAvlrralgGPRVMARQLRHLVEAAERPTVTLRV 204
                 4545565.899988888**************************66663355556668999999999999999988888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2161.60
//
Query:       KIR64685.1  [L=64]
Description: hypothetical protein TK50_03400 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-24   84.4   1.1    4.7e-24   84.2   1.1    1.0  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   1.1   2.6e-28   4.7e-24       1      53 [.       9      60 ..       9      61 .. 0.93

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 2.6e-28
      DUF397  1 atWrKSsySgggggnCVEvaalpdavavRDSkdpdgpvLtftpaewaaFlagv 53
                atWrKS++Sg++  +CVEva+ + av+vRDSkdp+gpvL+f++++w+aF+ag+
  KIR64685.1  9 ATWRKSTRSGSNA-DCVEVATGARAVGVRDSKDPAGPVLAFDRRAWTAFVAGL 60
                69********998.7****7777789*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 470.19
//
Query:       KIR64686.1  [L=396]
Description: hypothetical protein TK50_03405 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-17   63.7   0.0    4.3e-17   63.0   0.0    1.3  1  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   2.4e-21   4.3e-17       2     166 ..      63     235 ..      62     236 .. 0.86

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 2.4e-21
                  EEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTC...........CCTEEEEEEECSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekg.vkevilgggepllypdfvellerlakla...........vpgiritvetngt 87 
                  + t+ C  +C+fCa+++   +++ g + ++eeil+   e+ +e g + ++++gg +p++  +++e+l+  +k a           ++ ++++  ++g+
   KIR64686.1  63 NYTNVCVTACKFCAFYRA-PKHKEGWTHPTEEILRRCGEA-VELGaTQVMLQGGHHPDYGVEYYEELFSSVKQAypqlaihsigpSEILHMA-KVSGV 157
                  77999************6.9********************.9***9***************************8777777777744444443.34444 PP

                  CHGHHHHHHHHHTT-SEEE.EEEBSSSHHHHHHHHT.CTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  88 lpdeeklerllelgvdrvs.lgleaaddekvlklmn.rghtfeevlealeklreagikrvvdrivglpGendeeleellel 166
                   + +e ++r++ +g+d ++  g+e + d+  +k +   +++  ++le++e++++ g++ ++ +++++ Ge+ +e+ e+l++
   KIR64686.1 158 SL-DEAIARIKAAGLDSIAgAGAEMLPDR-PRKAIApLKESGARWLEVMELAHRQGLE-STATMMMGTGETAAERIEHLRM 235
                  44.***********766651677777777.999999999*******************.9****************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3008.67
//
Query:       KIR64687.1  [L=383]
Description: hypothetical protein TK50_03410 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.011   16.0   7.5       0.13   12.5   0.2    3.6  3  DUF11            Domain of unknown function DUF11
      0.036   14.3   2.4       0.64   10.3   0.0    3.4  3  NPCBM_assoc      NPCBM-associated, NEW3 domain of alpha-galac


Domain annotation for each model (and alignments):
>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.28   2.5e+03      23      38 ..      57      72 ..      46      82 .. 0.65
   2 ?    4.4   1.5     0.005        45       8      51 ..     102     153 ..      98     170 .. 0.69
   3 ?   12.5   0.2   1.5e-05      0.13       9      70 ..     185     252 ..     172     319 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.28
       DUF11 23 tNtgpasangvvvtDt 38
                tN+  +++ +v v+D+
  KIR64687.1 57 TNPVSKASVEVDVSDL 72
                4555555566666665 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.005
       DUF11   8 sevrpGdtvty.tltvtNtgpasangvvvtDtl.......P.aglayvsvsas 51 
                 + ++pG tv++  l+++N+g+ ++  + vt tl       P  ++++v+v  +
  KIR64687.1 102 ELPAPGRTVEVpLLVFKNNGGGPR-SAPVTFTLaspddttPeNNTRTVRVEFT 153
                 5678999**9945688*******9.7777766644333334556666666555 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 1.5e-05
       DUF11   9 evrpGdtvtytltvtNtgpasangvvvtDtlPaglayvsvsas....qgtasaltsv..gsLeagesa 70 
                 +++pG+t++ +  v N+g  +a g+++t +lP+g+++    +      g+ +++  +   +L+ g+ a
  KIR64687.1 185 ALQPGQTTVLVGEVFNQGDLAADGLRLTMLLPEGVTFAAEFTDcthsAGNRKVTCEIedLRLADGGDA 252
                 689999999999***********************998776665654666666666655555665554 PP

>> NPCBM_assoc  NPCBM-associated, NEW3 domain of alpha-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.11     1e+03      11      30 ..      50      69 ..      40      71 .. 0.82
   2 ?    0.9   0.3      0.06   5.4e+02       3      62 ..     106     165 ..     105     170 .. 0.56
   3 ?   10.3   0.0   7.2e-05      0.64       2      35 ..     187     220 ..     186     241 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.11
  NPCBM_assoc 11 ltvtndgtaaatnvslslsl 30
                 + ++n gt ++++ s+++++
   KIR64687.1 50 IKISNRGTNPVSKASVEVDV 69
                 6789********99999875 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.06
  NPCBM_assoc   3 pGetvtltl.tvtndgtaa.atnvslslslPeGWtvvevspasaaslapGetveatvkVtpp 62 
                  pG+tv++ l +++n+g+ +    v ++l  P++ t      ++  +++  e+  +++ V++p
   KIR64687.1 106 PGRTVEVPLlVFKNNGGGPrSAPVTFTLASPDDTT--PENNTRTVRVEFTEESGVDLGVRVP 165
                  67777776425667775551345777777777644..4444444555555555555555555 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 7.2e-05
  NPCBM_assoc   2 epGetvtltltvtndgtaaatnvslslslPeGWt 35 
                  +pG+t+ l  +v+n+g+ aa +++l++ lPeG t
   KIR64687.1 187 QPGQTTVLVGEVFNQGDLAADGLRLTMLLPEGVT 220
                  79*****************************966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2913.21
//
Query:       KIR64688.1  [L=412]
Description: cell wall anchor protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.013   15.5   2.2      0.013   15.5   2.2    2.4  2  Gram_pos_anchor  LPXTG cell wall anchor motif
       0.24   11.0  21.4       0.57    9.8  21.4    1.6  1  PT               PT repeat


Domain annotation for each model (and alignments):
>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   3.7     0.096   8.6e+02      24      35 ..      13      24 ..       7      29 .. 0.60
   2 ?   15.5   2.2   1.4e-06     0.013       3      41 ..     361     399 ..     359     400 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.096
                     XXXXXXXXXXXX CS
  Gram_pos_anchor 24 GllallggllLl 35
                     G++all++++L+
       KIR64688.1 13 GAAALLAAGGLA 24
                     666666666653 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.4e-06
                      EEBB-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor   3 kskkkqLPkTGengnifltaaGllallggllLlvkrRKk 41 
                      +++ + LP TG ++ ++  ++++ +l+gg+lL++ rR++
       KIR64688.1 361 SGGGGGLPVTGVQAGLIGGVGAAVLLAGGVLLVLARRRR 399
                      567789*****9999999999999999999996666653 PP

>> PT  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  21.4   6.3e-05      0.57       3      36 .]     327     358 ..     326     358 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 6.3e-05
          PT   3 taqPtaqPTvqPTgqPtaqPTdqPtaqPtdaPta 36 
                 +aqP   PT  P+g+P+a PT++P+ qP+  P++
  KIR64688.1 327 SAQP--SPTPTPSGEPSATPTAAPSGQPSVTPSP 358
                 6888..79999******************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2879.72
//
Query:       KIR64689.1  [L=237]
Description: ubiquinone biosynthesis methyltransferase UbiE [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-53  179.5   0.0    7.9e-53  179.2   0.0    1.0  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    2.8e-22   79.2   0.0    4.6e-22   78.5   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    7.6e-19   68.2   0.0    1.4e-18   67.4   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    4.9e-12   46.0   0.0    1.2e-11   44.8   0.0    1.7  1  Methyltransf_23  Methyltransferase domain
    3.1e-11   43.3   0.0    4.7e-11   42.7   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    1.5e-10   41.7   0.0    2.4e-10   41.0   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
    0.00018   21.2   0.0    0.00032   20.4   0.0    1.3  1  MetW             Methionine biosynthesis protein MetW
      0.004   17.0   0.0     0.0056   16.6   0.0    1.3  1  Methyltransf_8   Hypothetical methyltransferase
  ------ inclusion threshold ------
       0.01   15.1   0.0      0.015   14.6   0.0    1.2  1  Methyltransf_2   O-methyltransferase domain
      0.066   11.7   0.0      0.074   11.6   0.0    1.1  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
      0.088   12.6   0.0       0.24   11.1   0.0    1.8  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.13   11.3   0.0       0.17   10.9   0.0    1.1  1  RrnaAD           Ribosomal RNA adenine dimethylase
       0.23   10.6   0.1       0.55    9.4   0.0    1.6  2  NNMT_PNMT_TEMT   NNMT/PNMT/TEMT family


Domain annotation for each model (and alignments):
>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.2   0.0   5.8e-56   7.9e-53       7     232 ..      17     234 ..      10     235 .. 0.95

  Alignments for each domain:
  == domain 1  score: 179.2 bits;  conditional E-value: 5.8e-56
                      XXXXXXXX-HHHHHHHHHHHHHTTTHHHHHHHHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTE CS
  Ubie_methyltran   7 ekvkevfesvaskyDlmndvlslgihrlWkkfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkini 100
                      ++v+ +f+ va +yDl n vls+g+ r W++ +    +  +  +vlDv +Gtg  + +ls+s       v++D++  mL+ g++     +   +
       KIR64689.1  17 HEVAAMFDGVAARYDLTNTVLSFGQDRSWRRATRAALGLGPDDRVLDVGAGTGVSTEELSQSG---AYAVGADLSLGMLHAGKR-----SRPAV 102
                      4699*************************************************9999998764...45689*********9975.....45679 PP

                      EEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE----SHHHHHHHHHHHH.HHHHHHHHHHS-HHHHHHHHHH CS
  Ubie_methyltran 101 eflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpllsqayelyskevlPvlGkllakdldsyryLves 194
                       +l ++a +Lpf d sfD vt+sf lrnv+D++ aL+e+ rv +pGGrlvv efs + +p +++ y  y ++ lP + + ++ + + y yL+es
       KIR64689.1 103 PLLAGDALRLPFADASFDAVTISFALRNVSDTDAALRELARVTRPGGRLVVCEFSTPVNPAFRTVYLSYLMRSLPAVARTVSSNPEAYVYLAES 196
                      9********************************************************************************************* PP

                      HHHS--HHHHHHHHHHTTEEEEEEEEEGGGTEEEEEEE CS
  Ubie_methyltran 195 irafPdqetlkeliedaGfksveyesltgGvvaihigv 232
                      ira+Pdq  l+  i   G++ v +++ltgGvva+h+++
       KIR64689.1 197 IRAWPDQPALAGRIGATGWERVAWRNLTGGVVALHRAT 234
                      ***********************************987 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   3.4e-25   4.6e-22       1      96 []      62     153 ..      62     153 .. 0.93

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 3.4e-25
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                      LdvG+GtG  +e+l + ga  vg Dls  ml + k+  +     v ++ +da +lpf+d+sfD+v++s++l +v d ++al+e+aRv +pgG+l
       KIR64689.1  62 LDVGAGTGVSTEELSQSGAYAVGADLSLGMLHAGKRSRPA----VPLLAGDALRLPFADASFDAVTISFALRNVSDTDAALRELARVTRPGGRL 151
                      8******************************665544444....567**********************************************9 PP

                      EE CS
  Methyltransf_11  95 vi 96 
                      v+
       KIR64689.1 152 VV 153
                      96 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   9.9e-22   1.4e-18       1      97 []      61     149 ..      61     149 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 9.9e-22
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      vLd+G+GtG  t++l++ +  a  +g D+s +ml a ++      + v ++ gda +lpf+d+sfD+v++s+al  +s  d+++al+e+arv++
       KIR64689.1  61 VLDVGAGTGVSTEELSQSG--AYAVGADLSLGMLHAGKRSR----PAVPLLAGDALRLPFADASFDAVTISFALRNVS--DTDAALRELARVTR 146
                      9*****************5..**************999988....89************************9999988..5669********** PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       KIR64689.1 147 PGG 149
                      **9 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   8.4e-15   1.2e-11       7     124 ..      43     160 ..      36     223 .. 0.78

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 8.4e-15
  Methyltransf_23   7 eelsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdpp 99 
                      + +++++  +l+ l ++ rvLd+G+GtG  +e+l++ g+  +g Dls  + +  + +++  +    d+   ++ +++fd ++ ++ l +v d  
       KIR64689.1  43 RSWRRATRAALG-LGPDDRVLDVGAGTGVSTEELSQSGAYAVGADLSLGMLHAGKrSRPAVPLLAGDALRLPFADASFDAVTISFALRNVSDTD 135
                      567777776666.89999*****************************98877654322222222223334555777****************** PP

  Methyltransf_23 100 ellrqiatllkpgGylllseplasl 124
                      ++lr +a+ ++pgG+l+++e+  + 
       KIR64689.1 136 AALRELARVTRPGGRLVVCEFSTPV 160
                      ********************95543 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   3.4e-14   4.7e-11       4     127 ..      58     188 ..      55     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 3.4e-14
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileei 97 
                      + rvlD+G+GtG  t el +   ++a  vG D s  ++   +  +       v + +gd+  l+  ++d++fD ++   +l  ++d d++l+e+
       KIR64689.1  58 DDRVLDVGAGTGVSTEELSQ---SGAYAVGADLSLGMLHAGKRSRP-----AVPLLAGDALRLP--FADASFDAVTISFALRNVSDTDAALREL 141
                      679****************4...4788***********99988544.....7999*********..**************************** PP

  Methyltransf_31  98 ervlkpggilliedpr..............llaelp...akveeesk 127
                       rv +pgg+l++++++              l++ lp   + v+++ +
       KIR64689.1 142 ARVTRPGGRLVVCEFStpvnpafrtvylsyLMRSLPavaRTVSSNPE 188
                      ****************8888888888888777777744444444444 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   1.8e-13   2.4e-10       1      99 []      62     151 ..      62     151 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 1.8e-13
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+GtG  +++l ++  ++  +g D+s  ++++ k+   +   +  + ++l   d+       sfD+v++s++l ++ d++++l++++++ +
       KIR64689.1  62 LDVGAGTGVSTEELSQS--GAYAVGADLSLGMLHAGKRSRPAVPLLAGDALRLPFADA-------SFDAVTISFALRNVSDTDAALRELARVTR 146
                      8****************..99999*********7777777777777777777776664.......9**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgGrl
       KIR64689.1 147 PGGRL 151
                      ***97 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.3e-07   0.00032      13     103 ..      57     146 ..      50     158 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.3e-07
        MetW  13 pgsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqgdldkdl.enfedksfdyvvlsqtlqatrnpkevldellrigr 103
                 p  rvld+G+G G   e l +  +  + G +l+   + +  ++    +   + + l   f+d sfd v +s +l+++ +++  l+el r++r
  KIR64689.1  57 PDDRVLDVGAGTGVSTEELSQ-SGAYAVGADLSLGMLHAG-KRSRPAVPLLAGDALrLPFADASFDAVTISFALRNVSDTDAALRELARVTR 146
                 678****************65.899999999987666555.444433333333344046******************************986 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.1e-06    0.0056     110     161 ..     106     158 ..      99     204 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.1e-06
                     ES-TTS-S--TT-EEEEEEES---.SS-HHHHHHHHHHHEEEEEEEEEEEEGG CS
  Methyltransf_8 110 acdlakvPledesvdvavfclslm.gtnladflkeanrvlkvGGllkvaevks 161
                     a d  ++P +d s d + + ++l  + +    l+e  rv ++GG l v e ++
      KIR64689.1 106 AGDALRLPFADASFDAVTISFALRnVSDTDAALRELARVTRPGGRLVVCEFST 158
                     568889**********9999999636899999*****************9876 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.1e-05     0.015      65     177 ..      60     166 ..      40     185 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
                     EEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS-----TTEEEEES-TTTS-----SE....EEEESSGGGS-HHHHHHHHHHHHHH CS
  Methyltransf_2  65 slvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehlsageeervefvgGdffkdslPeaDa....illkrvlhDwsdekcvklLkrvkka 155
                     +++DvG GtG+  ++ ++   +  ++  Dl+  + +A ++     ++ v   +Gd    +lP aDa    + ++  l   sd +    L+++ + 
      KIR64689.1  60 RVLDVGAGTGVSTEELSQS--GAYAVGADLSLGMLHAGKR----SRPAVPLLAGDAL--RLPFADAsfdaVTISFALRNVSDTDA--ALRELARV 144
                     789************9986..5667778999889999988....89**********9..88877651111666667777777665..699***** PP

                     --TT-EEEEEE----TTS---H CS
  Methyltransf_2 156 lpagGkvivveavlgadpsgel 177
                      ++gG+++v e   +++p+  +
      KIR64689.1 145 TRPGGRLVVCEFSTPVNPAFRT 166
                     ************9999997554 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.4e-05     0.074     172     218 ..     109     154 ..      61     181 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.4e-05
  Methyltransf_29 172 tkrlpyPsrsfdlihCsrCridwteedgilllevdRvlRpgGyfvls 218
                      + rlp+  +sfd +  s  + + +++d+  l e+ Rv RpgG +v+ 
       KIR64689.1 109 ALRLPFADASFDAVTISFALRNVSDTDA-ALRELARVTRPGGRLVVC 154
                      469**************99999988886.589**********99975 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00018      0.24      69      92 ..      53      76 ..      34     164 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00018
                TT--TT-EEEEES-TTSHHHHHHH CS
        PCMT 69 lelkkgarvLevGsGsGyltavla 92
                l l + +rvL+vG+G+G  t  l+
  KIR64689.1 53 LGLGPDDRVLDVGAGTGVSTEELS 76
                77999************9986655 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00013      0.17      26      49 ..      53      76 ..      38      82 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00013
                H-GGTTSEEEEES-TTTCCHHHHH CS
      RrnaAD 26 lnleekltvleigpGkGilTeeLa 49
                l l +++ vl++g+G+G+ TeeL 
  KIR64689.1 53 LGLGPDDRVLDVGAGTGVSTEELS 76
                456699***************995 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       1.7   2.3e+03      58      68 ..      59      69 ..      52      72 .. 0.81
   2 ?    9.4   0.0    0.0004      0.55     154     198 ..     111     154 ..      98     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.7
                    CEEEEET-TT- CS
  NNMT_PNMT_TEMT 58 dtllDiGaGPT 68
                    d +lD+GaG  
      KIR64689.1 59 DRVLDVGAGTG 69
                    789*****975 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0004
                     -SS..EEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE CS
  NNMT_PNMT_TEMT 154 qlpkkadvvvtifcleaacedleeylralrnlasllkpGGhlvlg 198
                      lp  ad+   + ++  a ++++   +alr+la++ +pGG+lv+ 
      KIR64689.1 111 RLPF-ADASFDAVTISFALRNVSDTDAALRELARVTRPGGRLVVC 154
                     5664.78888888899999999999*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1817.35
//
Query:       KIR64690.1  [L=83]
Description: hypothetical protein TK50_03425 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0061   16.8   0.9     0.0082   16.4   0.8    1.3  1  DUF2267   Uncharacterized conserved protein (DUF2267)


Domain annotation for each model (and alignments):
>> DUF2267  Uncharacterized conserved protein (DUF2267)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.8   4.6e-07    0.0082      65     119 ..      11      61 ..       1      65 [. 0.76

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.6e-07
                 ----SHHHHHHHHHHTS.....EHHHHHHHHHHHHHHHS-HHHHHHHHHTS-HHH CS
     DUF2267  65 gkrfdreeflervaeelgvdpedaeqaaraVfaalkealsegeiedvaaqLPkdl 119
                 ++  d+ e+++++++ +g+dp+d+++++  V+aal++   ++    ++++LP+++
  KIR64690.1  11 PPDDDAAELVAQLRDLAGADPADVRRVVAEVLAALDRVAGGA----LRDHLPESI 61 
                 236799*****************************9875544....445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 656.35
//
Query:       KIR64691.1  [L=424]
Description: drug:proton antiporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-18   65.4   0.1    1.9e-16   60.3   0.0    2.1  2  FAD_binding_3   FAD binding domain
    7.7e-13   48.7   0.9    3.2e-07   30.3   0.1    2.6  3  DAO             FAD dependent oxidoreductase
    9.7e-09   34.8   0.1    1.6e-05   24.2   0.0    2.6  3  FAD_binding_2   FAD binding domain
    6.9e-08   31.9   0.8     0.0064   15.6   0.1    2.7  2  Lycopene_cycl   Lycopene cyclase protein
    8.6e-08   32.3   0.1    2.1e-07   31.1   0.1    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    3.7e-07   29.4   0.0    0.00017   20.6   0.0    2.8  3  Trp_halogenase  Tryptophan halogenase
    6.6e-07   28.8   0.0      7e-05   22.2   0.0    2.3  2  Thi4            Thi4 family
    1.2e-06   28.0   0.2    3.4e-06   26.5   0.1    1.7  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    3.2e-06   26.8   0.0      5e-06   26.1   0.0    1.2  1  FAD_oxidored    FAD dependent oxidoreductase
    1.7e-05   23.7   0.0    8.1e-05   21.5   0.0    1.9  2  HI0933_like     HI0933-like protein
      2e-05   23.9   0.0    2.8e-05   23.4   0.0    1.2  1  GIDA            Glucose inhibited division protein A
     0.0077   15.5   0.0      0.012   14.9   0.0    1.2  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.019   15.5   0.0      0.047   14.3   0.0    1.7  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
       0.13   11.9   0.1       0.21   11.2   0.1    1.3  1  ApbA            Ketopantoate reductase PanE/ApbA
       0.13   12.1   0.0       0.21   11.5   0.0    1.2  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
       0.16   11.4   0.1       0.27   10.7   0.1    1.3  1  adh_short       short chain dehydrogenase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   1.7e-19   1.9e-16       2     175 ..       8     179 ..       7     197 .. 0.84
   2 ?    3.1   0.0     0.041        46     279     309 ..     292     321 ..     271     356 .. 0.80

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 1.7e-19
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHH...CHH CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradle...les 94 
                    +dV++VGaGp G  +a  L+++Gvrv+l+ek +   ++  +dgl++r ++ l  +G++ + +a    n   g  + +       +r++l+   l s
     KIR64691.1   8 ADVIVVGAGPGGSATAYHLARHGVRVLLLEKTEFPREKVCGDGLTPRAVRQLIRMGVDTSTEAGWLHNR--GLRVIGG-----GVRLELDwpdLAS 96 
                    79*******************************************************999888775555..5555555.....4577777666778 PP

                    CST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEEC.CEECCCCCCCEEEECCTTEE.EEEEEEEEEE--GTT-HHHHHHTGG CS
  FAD_binding_3  95 spervtvypqteleriLvehaeerglqvrfkteves.leqdeegvtaevrdketgee.etvrakYlvGaDGgrStvrktlgie 175
                     p++  v    +++ +L+++a+++g+++r + +v++ +++ ++ v  +v +   ++e  t+ra  +v+aDG+ ++   +lg+ 
     KIR64691.1  97 FPNYGLVRTRLDFDDLLAQRAVSAGAKLRTSVNVTGpVLDADDRVIGVVAEVGPEKEpATFRAPLVVAADGVSGRFPLALGLA 179
                    88899999999**********************98845556667777777554444448*************99988888876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.041
                    SSSEETTEEE-GGGTEEE-STTSHHHHHHHH CS
  FAD_binding_3 279 ekyrkgrvflaGDAaHihpPtgGqGlNtaiq 309
                     +y++g v+l+GD+  ++ P +G G+  a++
     KIR64691.1 292 PHYTRG-VLLVGDSGGMVNPFNGEGIAYAME 321
                    556665.9*****************999986 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   2.9e-10   3.2e-07       1      32 [.       9      42 ..       9      50 .. 0.93
   2 !   16.4   0.0   4.5e-06    0.0051     150     224 ..     111     194 ..      79     222 .. 0.76
   3 ?   -2.1   0.0         2   2.3e+03     335     351 ..     312     328 ..     246     368 .. 0.62

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 2.9e-10
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSST CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdia 32
                dv+++G+G  G++tAy+Lar+g  V+llek +++
  KIR64691.1  9 DVIVVGAGPGGSATAYHLARHGvrVLLLEKTEFP 42
                8*****************************9555 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 4.5e-06
                 HHHHHHHHHTT-EEEESECEEE.EEEEETCEEEEE.EECTEEE.E..EEEE..EEE--GGGHH..HH.HTTCTTTSEE.EEEEEEE CS
         DAO 150 aalaraaealGveilegtevtg.leeedgkvwgve.rttpgen.d..aada..vVnaaGawsd..ll.gllkeldlpi.spvrgqv 224
                   la++a ++G+++++  +vtg + + d++v gv  ++  g + +  +++a  vV a G+  +  l+ gl+k+ d+pi ++vr ++
  KIR64691.1 111 DLLAQRAVSAGAKLRTSVNVTGpVLDADDRVIGVVaEV--GPEkEpaTFRAplVVAADGVSGRfpLAlGLAKREDRPIgVAVRRYY 194
                 56999*****************8656678999995522..3332233557784555555555575545555888999988888887 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2
                 TTTHHHHHHHHHHHHHH CS
         DAO 335 sghGltlapatGkllae 351
                 +g G+  a+ +G+l+ae
  KIR64691.1 312 NGEGIAYAMESGELAAE 328
                 44444444444444443 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.4e-08   1.6e-05       1      32 [.       9      40 ..       9      45 .. 0.96
   2 !    7.9   0.0    0.0012       1.4      90     204 ..      53     171 ..      51     245 .. 0.79
   3 ?   -2.5   0.0       1.8     2e+03     405     417 .]     356     368 ..     353     368 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.4e-08
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeq 32
                   DviV+G+G +G a A+ +a++G +v+++ek++
     KIR64691.1  9 DVIVVGAGPGGSATAYHLARHGVRVLLLEKTE 40
                   9*****************************97 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0012
                    HHHHHHHHHTT----BCCTS...SB-EEE-TT-SSTEEEE-.STT-.......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEEC.TTEEEEEEEE CS
  FAD_binding_2  90 peavdeLeelgvpfsrtedg...pvdvrelGglsatartlhdaadarr.etlvtghallarlvesarkagvdfqerteadeLive.dgrvtGavve 180
                    p+av++L ++gv+ s+ e g     ++r  Gg  +  + ++d a  ++   + t       l+++a +ag +++++ +++  + + d+rv G+v+e
     KIR64691.1  53 PRAVRQLIRMGVDTST-EAGwlhNRGLRVIGGGVRLELDWPDLASFPNyGLVRTRLDFDDLLAQRAVSAGAKLRTSVNVTGPVLDaDDRVIGVVAE 147
                    6788888888888888.55567555566664444443777777777777777777788888999****************99887366******** PP

                    ETTTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 181 npesgrevrirakavvlatgGfgr 204
                       +++  ++ra  vv a g  gr
     KIR64691.1 148 VGPEKEPATFRAPLVVAADGVSGR 171
                    777777789999988888877776 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.8
                    SSSTTS--TTHHH CS
  FAD_binding_2 405 gvhganrlgGnsl 417
                     ++g++rlgG+++
     KIR64691.1 356 RFGGYYRLGGIFV 368
                    689*******986 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   5.7e-06    0.0064       1      34 [.       9      40 ..       9     191 .. 0.73
   2 !   14.0   0.1   1.7e-05     0.019     243     329 ..     284     369 ..     279     399 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.7e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasp 34
                   Dv+v+GaGp g + A +l  a+ g++v+l+e  +
     KIR64691.1  9 DVIVVGAGPGGSATAYHL--ARHGVRVLLLEKTE 40
                   9*****************..**********7554 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.7e-05
  Lycopene_cycl 243 iPvtlggslprleqkvlaiGaaaglvhPaTGYsvarslaeapllasaiaaalres.slsarawatlwprerk.rqreffrllglalllk 329
                    +P+     +p+    vl +G  +g+v P  G  +a ++   +l a++ ++al++  +++++ +   +p+e k r  +++rl g  +++k
     KIR64691.1 284 LPM-GFNRVPHYTRGVLLVGDSGGMVNPFNGEGIAYAMESGELAAEVAVQALARPaGAERERALMAYPQELKaRFGGYYRLGG--IFVK 369
                    677.334567777889**************************99999999999876666666777888886515678887766..4443 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.1   1.9e-10   2.1e-07       1      28 [.      12      39 ..      12      75 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 1.9e-10
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   +vGaG +G+++Ay+La++g++vlllek 
     KIR64691.1 12 VVGAGPGGSATAYHLARHGVRVLLLEKT 39
                   8*************************95 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.5e-07   0.00017       1      59 [.       9      65 ..       9      77 .. 0.89
   2 ?   -0.3   0.0      0.32   3.6e+02     153     196 ..     106     150 ..      92     172 .. 0.73
   3 !    4.9   0.0     0.009        10     314     350 ..     294     334 ..     282     364 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.5e-07
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---SS.-EE--THHHHTHHHHT-- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeigtvgv.GeatipsirkllrlLgid 59
                    ++++vG+G+ G+ +A +la+++   ++v+l+e+ e+++ +v G++++p  +  l ++g+d
      KIR64691.1  9 DVIVVGAGPGGSATAYHLARHG---VRVLLLEKTEFPREKVcGDGLTPRAVRQLIRMGVD 65
                    699*******************...9************998799****999866667777 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.32
                     HHHHHHHHHHHHHHCT-EEEE-.-EEEEEE-TTS-EEEEEETTS- CS
  Trp_halogenase 153 aalyakfLrrvaearGvtrveg.kvvevqldedgrveslrledgr 196
                     +  ++++L + a ++G + +   +v+  +ld+d+rv ++  e g 
      KIR64691.1 106 RLDFDDLLAQRAVSAGAKLRTSvNVTGPVLDADDRVIGVVAEVGP 150
                     66799************977661566678888*999999887754 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.009
                     EETTEEE-CCCTEE--CCCS-HHHHHHH....HHHHHHHT- CS
  Trp_halogenase 314 wvknvvalGlasgfvePlestsihliqa....alrrLlall 350
                     + ++v+++G++ g v+P ++ +i+ +++    a++  ++ l
      KIR64691.1 294 YTRGVLLVGDSGGMVNPFNGEGIAYAMEsgelAAEVAVQAL 334
                     6789********************99986666444444444 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   6.3e-08     7e-05      17      49 ..       7      38 ..       3      50 .. 0.93
   2 ?    4.1   0.0     0.021        24      89     138 ..      99     147 ..      94     181 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 6.3e-08
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailer 49
                ++Dv++vGaG+ G ++ay la++ +++v++le+
  KIR64691.1  7 DADVIVVGAGPGGSATAYHLARH-GVRVLLLEK 38
                58*********************.*******98 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.021
                 SEEEESEHHHHHHHHHHHHHTSTTEEEEESEEEEEEEEETBTEEEEEEEE CS
        Thi4  89 dyvvvkdaalftstllskvlqlanvkllnavaveDlivregegvaGvvin 138
                 +y +v+    f   l+ +++  a++kl ++v v   ++  +++v Gvv +
  KIR64691.1  99 NYGLVRTRLDFDDLLAQRAVS-AGAKLRTSVNVTGPVLDADDRVIGVVAE 147
                 566777777888889999999.****************999******976 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1     3e-09   3.4e-06       2      37 ..       9      43 ..       8      90 .. 0.84
   2 ?   -2.1   0.0       1.6   1.7e+03     194     251 ..     118     179 ..     105     195 .. 0.59

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 3e-09
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtcln 37
                 dv+v+G+Gp+G a+a +la++g++v+l+ ++++++ 
   KIR64691.1  9 DVIVVGAGPGGSATAYHLARHGVRVLLL-EKTEFPR 43
                 899************************9.5554543 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.6
                  HHTTEEEEESCEEEEEEETTE..EEEEEETTSCE.....EEESEEEE-S-EEES-HHCSHCCT-E CS
                  xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 194 ekeGvevklgtsvkeidgnge..klevvledgee.....idadlvvvavGvrpstelleeklgle 251
                     G ++++  +v+    + +   + vv e g e     + a lvv a Gv+ + +l+   lgl+
   KIR64691.1 118 VSAGAKLRTSVNVTGPVLDADdrVIGVVAEVGPEkepatFRAPLVVAADGVSGRFPLA---LGLA 179
                  5556666666666632222222222244444444445559999999999998876664...5555 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   4.5e-09     5e-06       1      33 [.       9      41 ..       9      42 .. 0.97

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 4.5e-09
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergv 33
                  Dv+VvG+gp+G a A+  ar+G +vlL+e++++
    KIR64691.1  9 DVIVVGAGPGGSATAYHLARHGVRVLLLEKTEF 41
                  9****************************9976 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   7.3e-08   8.1e-05       2      40 ..       9      47 ..       8      51 .. 0.92
   2 ?   -0.5   0.0      0.34   3.9e+02     218     248 ..     145     176 ..     125     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 7.3e-08
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHH CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKil 40
                 dviv+G+G+ G  +A ++a++g rVlllek++ + +K+ 
   KIR64691.1  9 DVIVVGAGPGGSATAYHLARHGVRVLLLEKTEFPREKVC 47
                 8******************************99999986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.34
                  EE....ECTTEEEEEEEEE-SSEEESHHHHHH CS
  HI0933_like 218 vlsl.kkkkkatekgellfThrGlsGpailql 248
                  v+++  +k+ at++ +l+++  G+sG   l+l
   KIR64691.1 145 VAEVgPEKEPATFRAPLVVAADGVSGRFPLAL 176
                  44446789999***************666555 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.5e-08   2.8e-05       1      41 [.       9      48 ..       9      62 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.5e-08
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSS CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithkldtiaelsCn 41
                dviV+G+G  G++ A+++ar G++vlL+ +k++   e +C 
  KIR64691.1  9 DVIVVGAGPGGSATAYHLARHGVRVLLL-EKTEFPREKVCG 48
                8**************************9.666666666665 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.1e-05     0.012       1      31 [.      11      40 ..      11      43 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgn 31
                 i++GaGP G a+a++l ++g+ ++l lEk +
   KIR64691.1 11 IVVGAGPGGSATAYHLARHGV-RVLLLEKTE 40
                 89*******************.8*****975 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.2e-05     0.047       2      60 ..      10      69 ..       9      74 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.2e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievlln 60
                v+vvG+G  g   A  la++g +V ++e  + ++ +++++ +  +  ++l ++g++  ++
  KIR64691.1 10 VIVVGAGPGGSATAYHLARHGVRVLLLEKTEFPReKVCGDGLTPRAVRQLIRMGVDTSTE 69
                89**************************************99999999999999987665 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00019      0.21       1      42 [.      10      52 ..      10      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00019
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlr 42
                + ++GaG  Gs  a++La++g  v l+ +++   e++  +Gl+
  KIR64691.1 10 VIVVGAGPGGSATAYHLARHGVRVLLLEKTEfPREKVCGDGLT 52
                579************************9999877777777765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00018      0.21       2      32 ..      10      40 ..       9      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00018
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdise 32
                v v+GaG  G+  a+ +a++g++V l++ +e
  KIR64691.1 10 VIVVGAGPGGSATAYHLARHGVRVLLLEKTE 40
                78************************99865 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00024      0.27       3      41 ..      10      47 ..       8      69 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00024
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleeva 41
                v+v+Ga+ G G a+a++la+ G++v++++++e + e+v+
  KIR64691.1 10 VIVVGAGPG-GSATAYHLARHGVRVLLLEKTEFPREKVC 47
                89******9.*********************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 2846.07
//
Query:       KIR64692.1  [L=121]
Description: NADH dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-35  119.4   0.8    7.6e-35  119.0   0.8    1.1  1  Oxidored_q4  NADH-ubiquinone/plastoquinone oxidoreductase, ch
  ------ inclusion threshold ------
      0.016   15.1   1.0      0.024   14.5   1.0    1.2  1  DUF5373      Family of unknown function (DUF5373)
       0.14   12.5   0.4       0.14   12.5   0.4    2.3  3  DUF4212      Domain of unknown function (DUF4212)


Domain annotation for each model (and alignments):
>> Oxidored_q4  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0   0.8   1.3e-38   7.6e-35       3      99 .]      22     120 ..      20     120 .. 0.96

  Alignments for each domain:
  == domain 1  score: 119.0 bits;  conditional E-value: 1.3e-38
                  HHHHHHCHSS-----HHHHS-SSSS--SS---...--HHCHHHHHHHHHHHHHHHHHHHHHHHHSST..HHHHHHHHHHHHHHHHHHHHHHHHH-S-X CS
  Oxidored_q4   3 lllllsallgpkkpnkeklspYEcGfepvgea..rlrfsvkfylvallFliFDvevvflfpwavslkelglfgliemllFllillvglvYewkkgaLe 98 
                  + ++++++ gp+++nk+kl++YEcG+ep  +     rf++kfyl+a+lF++FD+e++fl+pwavs+++l +fg++em+lF++ ++v+++Y+w++g+L+
   KIR64692.1  22 FSVAAARFAGPRRYNKAKLEAYECGIEPSPQPvgGGRFPIKFYLTAMLFIVFDIEIIFLYPWAVSFDALPIFGFVEMVLFIVAVFVAYAYVWRRGGLD 119
                  6788999*********************99875579************************************************************** PP

                  X CS
  Oxidored_q4  99 W 99 
                  W
   KIR64692.1 120 W 120
                  * PP

>> DUF5373  Family of unknown function (DUF5373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.0   4.1e-06     0.024      17      70 ..      53     110 ..      47     115 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.1e-06
     DUF5373  17 PklfgvlPiklivlllqilalvlqivwlla....eetskvllllkivsivltaftvav 70 
                 P   g +Pik+  +++ ++++ + i++l+     +++ +++ ++++v+ ++++f+  +
  KIR64692.1  53 PVGGGRFPIKFYLTAMLFIVFDIEIIFLYPwavsFDALPIFGFVEMVLFIVAVFVAYA 110
                 555678********************98754212444445555666666666666555 PP

>> DUF4212  Domain of unknown function (DUF4212)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.6   9.7e+03      23      23 ..      20      20 ..       9      40 .. 0.56
   2 ?   12.5   0.4   2.3e-05      0.14      41      68 ..      57      84 ..      49      89 .. 0.92
   3 ?    3.2   0.5     0.019   1.1e+02      49      73 ..      95     119 ..      91     120 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.6
     DUF4212 23 s 23
                s
  KIR64692.1 20 S 20
                1 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2.3e-05
     DUF4212 41 lgfplgFwfaaqgsilvfvvlifvYalr 68
                + fp+ F+++a   i+  + +if+Y + 
  KIR64692.1 57 GRFPIKFYLTAMLFIVFDIEIIFLYPWA 84
                579**********************986 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.019
     DUF4212  49 faaqgsilvfvvlifvYalrmdrlD 73 
                 f+   + +v+v + ++Y++r+  lD
  KIR64692.1  95 FVEMVLFIVAVFVAYAYVWRRGGLD 119
                 5566778888888889999887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 946.72
//
Query:       KIR64693.1  [L=225]
Description: NADH-quinone oxidoreductase subunit B [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-22   80.2   0.1    1.6e-22   79.7   0.1    1.2  1  Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit


Domain annotation for each model (and alignments):
>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.1   9.1e-27   1.6e-22       3     131 .]      37     146 ..      36     146 .. 0.88

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 9.1e-27
                  HHHHHHT-TTTTHHHHHHTEEEEEETTT-S--HHHHHHTHTTTSEEEEEESBE...EEEHHHHHHHHGGGSSEEEEESHHHHH-TGGGSTT-TEE-HH CS
  Oxidored_q6   3 GcsisllaleedlldllelielryhetlladskeeeieakekeadvlvveGavtrkpkealellkelaekakaviavGtCAafGGipaaannpsvgee 100
                  +c i+++a+  + +d+      r+++++  +s         ++ad+++v G v++k+++ l++++++++++++v ++G CA++GG++   nn++    
   KIR64693.1  37 CCAIEMMAAGGPHYDM-----GRWGMEVFRASP--------RQADLMIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMF---NNYAI--- 115
                  4999999999999999.....888876655444........39********************************************...54544... PP

                  HHHHHC.S-E.EEE-SSS--HHHHHHHHHHH CS
  Oxidored_q6 101 vgellevvpvdinipGCPphpeailetllal 131
                  v+++++ vpvd+++pGCPp+pe +++++l+l
   KIR64693.1 116 VQGVDHIVPVDMYLPGCPPRPEMLIDAILKL 146
                  569***********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1668.39
//
Query:       KIR64694.1  [L=245]
Description: NADH dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-47  159.2   0.0      9e-47  158.7   0.0    1.2  1  Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd s


Domain annotation for each model (and alignments):
>> Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.7   0.0     5e-51     9e-47       2     120 ..     104     225 ..     103     227 .. 0.97

  Alignments for each domain:
  == domain 1  score: 158.7 bits;  conditional E-value: 5e-51
                     E--HHHHHHHHHHHHH...TT--EEEEEEEEETT...SSSEEEEEEEE--S-.-EEEEEE....-S-BEE--TTT-STHHHHHHHHHHHSHHBCT CS
  Complex1_30kDa   2 vvepedllevakflkdeeelgfdvlsdltavDek...eerfevvyhllsleknerirvkvevdeeepevpSvtdlfpgadwyEREayDmfGivfe 93 
                     +v+pe+++ev+++l+d+ +l+f+++s++++vD+    e+r++vvy+l+s++ ++r+r++++v++e+p++pSvt ++p+adw+ERE+yDmfGivf+
      KIR64694.1 104 HVRPERIAEVCQVLRDDLALRFELCSSVSGVDYLgadERRLHVVYQLTSMTYRRRLRLEAAVSAEAPHLPSVTAVYPTADWQERETYDMFGIVFD 198
                     799*****************************888889************************99******************************* PP

                     TSSTSS-SSSSTTSSS-TTSTTS---- CS
  Complex1_30kDa  94 ghpdlrrillpedfeghPLRkdfplsg 120
                     ghp+l+ril+p+d+eghP Rkd+pl g
      KIR64694.1 199 GHPNLTRILMPDDWEGHPQRKDYPLGG 225
                     ************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1601.85
//
Query:       KIR64695.1  [L=441]
Description: NADH dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.5e-110  368.6   0.0   1.9e-110  368.2   0.0    1.1  1  Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd s
  ------ inclusion threshold ------
      0.062   13.3   0.1       0.12   12.3   0.1    1.4  1  DBC1            DBC1
       0.15   11.0   0.0       0.31    9.9   0.0    1.5  1  NiFeSe_Hases    Nickel-dependent hydrogenase


Domain annotation for each model (and alignments):
>> Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.2   0.0  3.2e-114  1.9e-110       2     271 .]     156     441 .]     155     441 .] 0.99

  Alignments for each domain:
  == domain 1  score: 368.2 bits;  conditional E-value: 3.2e-114
                     TT-HHHHHHHHHHHHHHHHHHHHHHSSSSS-TTBESSBBSS---TTHHHHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHSSSS-BSHHHHHHHTT CS
  Complex1_49kDa   2 lGaltvflyafreRekildlleevtGaRltasyiriGGvarDlpegllekikeflkelekkldeleklltknrifkkRtkgvgvlskeealelgl 96 
                     lGa++++ly freRe+ild++e++tG R++++y+r+GGva+D+p+++++ki++flk ++kkl+e+e+ll+ ++i+++Rtk+v+vl+ + +l+lg+
      KIR64695.1 156 LGAISIMLYGFREREYILDIFETITGLRMNHAYVRPGGVAQDVPDDAIRKIRDFLKMMPKKLKEYEDLLSGQPIWTERTKHVAVLDVTACLALGV 250
                     8********************************************************************************************** PP

                     -SSSSGGGT-TTTHHHHSS-SSGGGS-------SSBSHHHHHHHHHHHHHHHHHHHHHHHHT--.S-SB---TTTS---................ CS
  Complex1_49kDa  97 tGpvlRasGvkyDlRkaepYeaYdeldfdvpvgeegDvydRylvrveEmrqSlkIieqaleklpegpvlaedkkvalpk................ 175
                     tGpvlR++G+++DlRk++pY++Y++++fdvp++ +gDv+ Rylvr++E+r+Slk++eqal++l+ gpv+++dkk+a+p                 
      KIR64695.1 251 TGPVLRSAGLAWDLRKTMPYCGYESYEFDVPTHPDGDVWGRYLVRLAEIRESLKLVEQALDRLKPGPVMVADKKIAWPAqlaigvdgmgnslehv 345
                     ******************************************************************************88**************9 PP

                     GGGGGT-HHHHHHHHHHHHS-----SEEEEEEEEETTEEEEEEEEEESSSS-SEEEEE-HHHHTTTTHHHHTTTS-SGGGTHHHHTT---HHHHH CS
  Complex1_49kDa 176 keevkksmealihhfklvtegfkvpkgevyaavEapkGelgvylvsdgsskpyrlkirapsfvnlqaleellkgellaDvvailgsldivlgevD 270
                      + + +sme+lihhfklvtegf+vp+g+vy+ +E+p+Gelgv+ vsdg+++pyr+++r+psfvnlqal+++++g l+aDv+a  +sld+v+g +D
      KIR64695.1 346 AKIMGQSMESLIHHFKLVTEGFRVPPGQVYVGIESPRGELGVHAVSDGGTRPYRVHYREPSFVNLQALPAMAEGGLIADVIAGGASLDPVMGGCD 440
                     9********************************************************************************************** PP

                     - CS
  Complex1_49kDa 271 R 271
                     R
      KIR64695.1 441 R 441
                     9 PP

>> DBC1  DBC1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1     2e-05      0.12      18      44 ..      17      43 ..       7      49 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2e-05
        DBC1 18 elmaiGGpwspslDGadPatdpsvLik 44
                 +++ GG w++ + G+dP +d++ +++
  KIR64695.1 17 VFTVTGGDWDQVVSGTDPINDERIVVN 43
                37889*****************99997 PP

>> NiFeSe_Hases  Nickel-dependent hydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   5.3e-05      0.31       2      70 ..      79     149 ..      78     152 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 5.3e-05
                   -HHHHTTTS-GGGHHHHHHTT-SSSTTHHHHHHHHHHHHHHT-..---HHHHHHHHHHHHHHHHHHHHHHH CS
  NiFeSe_Hases   2 GlElilkgrdprdawalvqRiCGVCttvHalasvravedAlgi..kipknarlirnliaaalllhdhivhF 70 
                   G+E+ l+ r+  +  ++v R+    +    +a   ave+ lgi  +i++ a+ ir l++  + + +h+v++
    KIR64695.1  79 GIEKNLEYRNWVQGSTFVTRMDYLSPIFNETAYSLAVEKLLGItdDITERATTIRVLMMELNRISSHLVWL 149
                   89999999999999999999999999999**************767***********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3065.26
//
Query:       KIR64696.1  [L=325]
Description: NADH dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-49  166.1   0.0    5.6e-49  165.7   0.0    1.1  1  2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
  ------ inclusion threshold ------
       0.11   13.0   0.1       0.29   11.6   0.1    1.8  1  DUF1636          Protein of unknown function (DUF1636)


Domain annotation for each model (and alignments):
>> 2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.7   0.0   6.2e-53   5.6e-49       2     144 ..      14     158 ..      13     159 .. 0.98

  Alignments for each domain:
  == domain 1  score: 165.7 bits;  conditional E-value: 6.2e-53
                      HHHHTTS-..-GGGGHHHHHHHHHHHHSS--HHHHHHHHHHHTS-HHHHHHHHTTSSSS-SS---SEEEEEE-SHHHHTTTHHHHHHHHHHHHT CS
  2Fe-2S_thioredx   2 keiiakyp..ekrsaliplLklvQeeegwlpeealeevaellgvppaevyevatFYsmfnlkpvgkyviqvCtttpCalrgseeilealekklg 93 
                      +eiia+yp  ++rsal+plL+lvQ+eeg+++++ +e +ae+lg+++a+v +vatFY+m++++p+g+y ++vCt+t+C + g +e++++l ++lg
       KIR64696.1  14 REIIARYPadRSRSALLPLLHLVQSEEGYVSPAGVEFCAEVLGLNKAQVGAVATFYTMYKRRPTGDYLVSVCTNTMCNVLGGQEVYDTLAEHLG 107
                      69******9999********************************************************************************** PP

                      --TT-B-TTSSEEEEEES--S-GGGSSEEEESSSSEEES-HHHHHHHHHHH CS
  2Fe-2S_thioredx  94 ikagettadgkftleeveClGaCanaPvvqindevyedltpekveeilekl 144
                      + ++ettadgk+tle++eCl+aC+ +Pv+++n ++++ ++p+++  ++e+l
       KIR64696.1 108 VGHDETTADGKVTLEHAECLAACDYGPVMTVNYDFFDGVDPQTAVGVVEEL 158
                      ********************************************9999987 PP

>> DUF1636  Protein of unknown function (DUF1636)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   3.2e-05      0.29      24      61 ..     101     138 ..      81     141 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.2e-05
     DUF1636  24 kLlealqalaeeaeleeeveiqeveClsaCkrpcaval 61 
                  L+e+l   ++e++++ +v++++ eCl+aC+ + ++++
  KIR64696.1 101 TLAEHLGVGHDETTADGKVTLEHAECLAACDYGPVMTV 138
                 5677777778889999**************99877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1020  (0.0568911); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2251.77
//
Query:       KIR64697.1  [L=438]
Description: NADH dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-47  161.1   0.0    2.9e-47  160.3   0.0    1.4  1  Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subu
    1.7e-29  101.7   0.0    2.9e-29  101.0   0.0    1.4  1  NADH_4Fe-4S   NADH-ubiquinone oxidoreductase-F iron-sulfur bi
    6.1e-09   35.6   0.0    1.2e-08   34.7   0.0    1.5  1  SLBB          SLBB domain
  ------ inclusion threshold ------
       0.23   11.9   2.4       0.44   11.0   2.4    1.5  1  TNFR_c6       TNFR/NGFR cysteine-rich region


Domain annotation for each model (and alignments):
>> Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.3   0.0   6.5e-51   2.9e-47       1     151 [.      55     226 ..      55     227 .. 0.96

  Alignments for each domain:
  == domain 1  score: 160.3 bits;  conditional E-value: 6.5e-51
  Complex1_51K   1 vkeagivGrGGagfPthvKlkakakkkk..kylivNaaEcEPgltkDrllmreepheileGlkiaaealgaekgvigvrdekpeaiealekalaeak 95 
                   +k++g++GrGGagfPt++K+ + ++ +   +yl+vNa+E+EPg++kD  lm ++ph+++eG++i  +a++a++++i++r+e  +a+++l++a++ea+
    KIR64697.1  55 IKDSGLRGRGGAGFPTGLKWGFIPQGDGkpHYLVVNADEGEPGTCKDLPLMTHDPHSLVEGVIIGSYAIRASRAYIYIRGEAVHAARRLRSAVQEAY 151
                   79*******************999865578******************************************************************* PP

  Complex1_51K  96 aagl...........ldievvklagkYpaGeekaLiesltgr.evprgkpp..advgv.....vvnNveTlaavy 151
                   a+g+           ld+ v+++ag+Y++Gee+aL++sl+g  + pr +pp  a+ g+     vvnNv+T+a+v+
    KIR64697.1 152 AKGYlgrnilgsgfdLDLVVHSGAGAYICGEETALLDSLEGFrGQPRLRPPfpATHGLyasptVVNNVGTIASVP 226
                   *****************************************88********7677777***************97 PP

>> NADH_4Fe-4S  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.0   6.4e-33   2.9e-29       3      83 ..     338     418 ..     336     420 .. 0.97

  Alignments for each domain:
  == domain 1  score: 101.0 bits;  conditional E-value: 6.4e-33
                  HHHHHHHHHHH--S--HHHHIIIIHHHHHHHHHTBT---HHHHHHHHHHHHHHSS--SSTHHHHHHHHHHHHHHHHHHHHH CS
  NADH_4Fe-4S   3 arrllefyaaesCGkCtpCreGtkrllelleriaagegteedldlleelaetikgtslCalgdsaanpvlsalrkFreefe 83 
                  + r+lefy++esCGkCtpCreG  +++++ +ri ag+gt+edld+l +++++i g+s+C+lgd+a+  v+s l++F++++ 
   KIR64697.1 338 TYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHEDLDTLLDTCDNILGRSFCGLGDGATSSVTSSLKYFKQDYL 418
                  56899*************************************************************************996 PP

>> SLBB  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   2.7e-12   1.2e-08       3      56 ..     251     297 ..     249     299 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2.7e-12
                 EEESSBSS-EEEEEETT-BHHHHHHTTT-SBSS.........-E.EEE-SSSSS- CS
        SLBB   3 tVtGeVkrPgnyevpigttlsdlieqaGGltddadlksvnLarl.avipgGpmmg 56 
                  ++G V++Pg ye ++g tl++l+e+aGG+ + ++       r+ +  pgG++++
  KIR64697.1 251 SLSGRVANPGQYECTMGVTLRELLELAGGMQPGHN------LRFwT--PGGSSTP 297
                 789******************************99......57777..9999886 PP

>> TNFR_c6  TNFR/NGFR cysteine-rich region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.4   9.9e-05      0.44       7      26 ..     342     361 ..     333     365 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.9e-05
                 CCCTCTCSEEEEE-BGCTEE CS
     TNFR_c6   7 tdnenskeClpCtrCppgqv 26 
                  + +++++C +Ct+C++g +
  KIR64697.1 342 LEFYHHESCGKCTPCREGNY 361
                 44455556********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3201.45
//
Query:       KIR64698.1  [L=838]
Description: NADH dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-23   80.8   0.0    3.4e-14   52.6   0.0    2.1  2  Molybdopterin    Molybdopterin oxidoreductase
    1.2e-19   70.2   1.1    5.3e-19   68.1   1.1    2.2  1  Fer2_4           2Fe-2S iron-sulfur cluster binding domain
    1.9e-15   56.1   0.4    3.9e-15   55.1   0.4    1.6  1  NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur
    2.2e-10   40.6   0.1    9.5e-10   38.5   0.0    2.1  2  Molydop_binding  Molydopterin dinucleotide binding domain
    8.2e-07   28.9   1.8    1.2e-06   28.4   0.3    2.1  2  Fer2             2Fe-2S iron-sulfur cluster binding domain
     0.0017   18.3   0.2     0.0017   18.3   0.2    1.9  2  Molybdop_Fe4S4   Molybdopterin oxidoreductase Fe4S4 domain
  ------ inclusion threshold ------
       0.16   11.8   3.8          3    7.8   0.2    3.0  3  Fer4             4Fe-4S binding domain
       0.34   11.5   7.0        3.9    8.2   0.3    2.7  2  Fer4_7           4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   1.5e-17   3.4e-14       1     153 [.     297     440 ..     297     458 .. 0.79
   2 !   26.1   0.0   1.7e-09   3.9e-06     337     413 ..     571     646 ..     516     652 .. 0.85

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 1.5e-17
                    B--S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHH.CHHCCC CS
  Molybdopterin   1 RlkyPmvRkqargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfydwyadlppasaq.qtigsd 95 
                    R+++P+vR +a+  G+++++sW eAl++ a+ l + ++    ++   + +g+ + +e  ++++k+++   +  ++ +d  a+    s +   + ++
     KIR64698.1 297 RITNPLVR-DAE-TGELREASWSEALTVAAEGLAAARDSARGTA---VLTGGRLTVEDAYAYAKFARVALR--TNDIDFRARP--VSREeSDFLAS 383
                    99******.777.9*********************555555533...55777777***************9..5666666665..33332333333 PP

                    CCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC-EEEEECSSB-H CS
  Molybdopterin  96 srsnyessnpledlensdliilwGsNvreerpilnarirkaalkkkakvivigpryae 153
                    s  +  +  + +d+en+ +++l+G  + ee pil  r+rka+lkkk+ v +i p  + 
     KIR64698.1 384 S-VAGRTDVTYADVENAPAVVLVGLEPEEECPILFLRLRKAYLKKKLTVYAIAPFATR 440
                    3.3455566677******************************************9885 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 1.7e-09
                    TSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEEEESCSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEEEEESS CS
  Molybdopterin 337 sgkkvlyllgnnpevdhadenevekalekldlvvvldgrltstalyaDiiLPaatwyEkedlytndegrfqhlkqav 413
                    +++++l ++g  +  d ad  + e+al    ++v l+ r++  a++aD++LP a  +Ek + + + egr   ++++ 
     KIR64698.1 571 GQLGALVVAG-VDPADLADPRLAEQALDAVPFLVSLELRMSAVARRADVVLPVAPVVEKAGSFLDWEGRLRPFEAVL 646
                    5566665566.44556677788889999999**************************************99888876 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   1.1   2.3e-22   5.3e-19       2      80 ..       9      84 ..       8      86 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 2.3e-22
      Fer2_4  2 rpvtltfDGkevtvpeGdtvasAllangvdvprsckygrprgelcaggeCrnClVevegepn.vracstpvedGlkvetq 80
                ++vtlt+DG evt+p+G  +++++ + g ++pr c +      l + g+Cr+ClVeveg+++ v++c+++v++G++v+tq
  KIR64698.1  9 ETVTLTIDGVEVTAPKGALLIRVAEQLGTEIPRFCDH----PLLAPAGACRQCLVEVEGQRKpVASCTQTVAEGMVVRTQ 84
                68***********************************....9****************988868***************9 PP

>> NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.4   1.8e-18   3.9e-15       2      40 .]      95     133 ..      94     133 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 1.8e-18
  NADH-G_4Fe-4S_3   2 ktilellLanHpldCltCdknGnCeLQdlayelgveesr 40 
                       +++ellL nHpldC+ Cdk+G+C LQ+ a+  g ++sr
       KIR64698.1  95 EGVMELLLMNHPLDCPMCDKGGECPLQNQAMSTGRTDSR 133
                      689*******************************99886 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.6     1e+04      48      63 ..      16      31 ..      16      34 .. 0.85
   2 !   38.5   0.0   4.2e-13   9.5e-10       4      83 ..     712     792 ..     710     817 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.6
                     -EEEEEETTEEEEEEE CS
  Molydop_binding 48 dlVevesrrGsvevra 63
                     d Vev+ ++G++  r+
       KIR64698.1 16 DGVEVTAPKGALLIRV 31
                     569*******999887 PP

  == domain 2  score: 38.5 bits;  conditional E-value: 4.2e-13
                      EEE-BTTBSTTTTTCGCCHHHHCSSS-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC.... CS
  Molydop_binding   4 itgrsldqlhsqtrtrpvlrlakpepevveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwwe...a 83 
                       t ++l  l s t+ ++ l   ++ p v+++    A+alG++dGd V+v ++rG+++++a++te ++ Gvv++p++ +    +
       KIR64698.1 712 ATWHQLVDLGSLTDGDEHLGGTARPP-VARLGKGAAEALGVADGDPVTVGTDRGAITLPAAITE-MPDGVVWLPTNSPGstvR 792
                      56666666777777777766666555.9999999******************************.**********99986442 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.3   5.2e-10   1.2e-06       2      73 ..      14      71 ..      13      86 .. 0.76
   2 ?   -2.7   0.1       2.7   6.1e+03      17      40 ..      95     118 ..      86     118 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 5.2e-10
                ETTTEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSS......SSSSTTEEEEEESCECTTSSSSTHHHHHTTEEEEGG CS
        Fer2  2 tidgkevevevadgettlldaaeenggidipysCgg......ggCgtClvevlegevqsdetelegeeldegklrlaC 73
                tidg ev+++  +g   l  +ae+  g++ip +C +      g+C+ Clvev+  +                  +++C
  KIR64698.1 14 TIDGVEVTAP--KGAL-LIRVAEQL-GTEIPRFCDHpllapaGACRQCLVEVEGQRK----------------PVASC 71
                6777766555..5665.******99.***************888*******884333................33444 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.7
                 HBHHHHHHHTTTTTSTTSSSSSS.S CS
        Fer2  17 ttlldaaeenggidipysCgggg.C 40 
                   +++ +  n+ +d p  C  gg C
  KIR64698.1  95 EGVMELLLMNHPLDCP-MCDKGGeC 118
                 4477888888888888.89988888 PP

>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.8       4.6     1e+04       8      17 ..     109     120 ..     109     124 .. 0.67
   2 !   18.3   0.2   7.7e-07    0.0017       5      52 ..     244     291 ..     241     294 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.6
                     -SSB..TT--EE CS
  Molybdop_Fe4S4   8 CpyC..gvgCgl 17 
                     Cp+C  g  C+l
      KIR64698.1 109 CPMCdkGGECPL 120
                     899944455666 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 7.7e-07
                     EEE-SSBTT--EEEEEEETTEEEEEEE-TTSTTTTT---HHHHTCHHC CS
  Molybdop_Fe4S4   5 ktaCpyCgvgCglevhvkdgkivkvegdpdhpvnegrlCvKGrtller 52 
                     +++C+ C+ gC  +   + gk+ +    +d +vne  +C KGr + ++
      KIR64698.1 244 PSVCEHCSAGCAQRTDWRRGKVLRRLAGDDPQVNEEWNCDKGRWGFQY 291
                     79*********************87777889************99887 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0014         3       3      15 ..     153     165 ..     151     167 .. 0.87
   2 ?    4.4   0.1     0.015        35      15      24 .]     218     227 ..     218     227 .. 0.88
   3 ?   -3.5   0.1         5   1.1e+04       5      11 ..     244     250 ..     243     252 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0014
                 EETTTSSS-THHH CS
        Fer4   3 ideekCigCGaCv 15 
                  d e+C+ C +C 
  KIR64698.1 153 LDRERCVLCQRCT 165
                 699*********6 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.015
                 HHHSTTTEEE CS
        Fer4  15 vevCPvgAIt 24 
                 v++CPvgA+t
  KIR64698.1 218 VQICPVGALT 227
                 789*****86 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 5
                 TTTSSS- CS
        Fer4   5 eekCigC 11 
                 ++ C +C
  KIR64698.1 244 PSVCEHC 250
                 6789999 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   1.6     0.012        27      12      45 ..     118     165 ..     105     167 .. 0.54
   2 ?    8.2   0.3    0.0017       3.9       9      46 ..     218     256 ..     216     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.012
      Fer4_7  12 Cp..vkaield.....eeenekgt.......ekveidpekClgCgaCv 45 
                 Cp  ++a+++       +e++++         +v +d e+C+ C++C 
  KIR64698.1 118 CPlqNQAMSTGrtdsrFHEHKREYpkplpisTQVLLDRERCVLCQRCT 165
                 66544444433222221222222233344445668899*********6 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0017
      Fer4_7   9 vaaCpvkaieldeeenekgtekveidpekClgCga.Cva 46 
                 v+ Cpv+a++  ++   ++  +++ +p+ C +C a C++
  KIR64698.1 218 VQICPVGALTGAQYRFRARPFDLVSSPSVCEHCSAgCAQ 256
                 578*******998755556688999*********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.51
# Mc/sec: 4934.12
//
Query:       KIR64699.1  [L=450]
Description: NADH-quinone oxidoreductase subunit H [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.5e-124  412.5  21.1   1.1e-123  412.3  21.1    1.0  1  NADHdh    NADH dehydrogenase


Domain annotation for each model (and alignments):
>> NADHdh  NADH dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.3  21.1  6.4e-128  1.1e-123       2     298 ..      26     359 ..      25     360 .. 0.97

  Alignments for each domain:
  == domain 1  score: 412.3 bits;  conditional E-value: 6.4e-128
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-SSTTTTTTHHHHHHHHHCCS-----TTS-HHHHHHHHHHHHHHHHCTTTTS-SSS.......... CS
      NADHdh   2 klllllvvlllvvalltlleRkvlAriqdRlGPnrvGplGllqplaDalKlllKediipkkadkllfllapvlalilallafaviPfge.......... 90 
                 k+l+++v+ ll+++l +++eR+v++++q R GPn+vGp+Gllq+laD+lK+ +Kedi+pk+adk+++++apv+++++a++a+ v+Pfg+          
  KIR64699.1  26 KVLFAFVFGLLATLLGVWFERRVVGYMQVRPGPNQVGPFGLLQTLADGLKMAFKEDILPKAADKVVYFFAPVISVVCAVTALSVVPFGPmvsifghrtp 124
                 67888888899999**************************************************************************66778888999 PP

                 .SSS--TTHHHHHHHHHHHCHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS-HHHHHHCCCTT..............-CCCC CS
      NADHdh  91 .vladlnvglllilalsslgvygillaGwasnskYallGalRsaaqmisyEvalglsllavvllagslslseiveaqeei..............wfill 174
                  +++d+ v++l++la+ssl+vygi+l+Gwas+s+Y+llG+lRs+aqmisyEva+gls++av+++ag++s+s iv+aq +               w+++l
  KIR64699.1 125 lQVTDVPVAVLVLLACSSLAVYGIVLGGWASGSTYPLLGGLRSSAQMISYEVAMGLSIVAVFMTAGTMSTSGIVAAQGDAtrltiagteipapgWYAIL 223
                 *****************************************************************************87789************99888 PP

                 HHHHHHHHHHHHHHCCTCTTBTTTTSTTSSSSCCCTT-HCHHHHHHHHHHHHHHHHHHHHHHHHCT.SS-HCCS............HHHHHHHHHHHHH CS
      NADHdh 175 qllafiifliallaetnraPFDlpeaesELvaGfhtEYsgmkfalfflaeyanmvlvsalavllFlgGwllpfs............gllwfllKvllll 261
                  l++fiif+ia++ etnraPFDlpeaesELvaGf+tEYs++kfalf+l+ey++mv++sa++++lFlgGw++p++            ++lwf+ Kvl+l+
  KIR64699.1 224 LLPSFIIFFIATVGETNRAPFDLPEAESELVAGFMTEYSSLKFALFMLSEYVAMVTMSAVTTTLFLGGWRAPWPitlwadantgwwPMLWFFGKVLALV 322
                 8************************************************************************************************** PP

                 HHHHHHHHC----TCHHHHHHHCCTCHHHHHHHHHHH CS
      NADHdh 262 flfiwiratlpRlRydqlmklgwkvllplalanlllt 298
                 f+f+w+r tlpRlRydq+m++gwkvllp+ l+++l++
  KIR64699.1 323 FVFVWLRGTLPRLRYDQFMRFGWKVLLPINLVWILVL 359
                 **********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3247.15
//
Query:       KIR64700.1  [L=213]
Description: NADH dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-16   58.1  11.3    3.8e-08   32.8   0.8    2.3  2  Fer4      4Fe-4S binding domain
    2.8e-11   43.8   6.8    4.6e-11   43.1   6.8    1.4  1  Fer4_7    4Fe-4S dicluster domain
    5.5e-11   42.4  17.2    1.3e-08   34.8   8.6    1.6  2  Fer4_10   4Fe-4S dicluster domain
    9.7e-10   39.2   2.9    0.00025   21.9   0.1    2.3  2  Fer4_16   4Fe-4S double cluster binding domain
    2.6e-09   37.1  17.4    6.4e-08   32.6   8.1    1.9  2  Fer4_9    4Fe-4S dicluster domain
    4.4e-09   36.3   4.9    0.00034   20.7   0.5    2.2  2  Fer4_21   4Fe-4S dicluster domain
    1.2e-08   34.7  11.6    0.00011   22.1   3.4    2.2  2  Fer4_6    4Fe-4S binding domain
    2.3e-08   33.6  11.2    0.00035   20.5   2.2    2.3  2  Fer4_2    4Fe-4S binding domain
    3.4e-07   30.6   5.7     0.0019   18.6   0.3    2.3  2  Fer4_8    4Fe-4S dicluster domain
    1.4e-05   25.7  14.2     0.0055   17.6   2.5    2.3  2  Fer4_3    4Fe-4S binding domain
    1.7e-05   25.0   8.5     0.0069   16.8   0.9    2.2  2  Fer4_4    4Fe-4S binding domain
    2.4e-05   24.8   8.4      0.003   18.1  10.4    2.2  3  Fer4_17   4Fe-4S dicluster domain
    6.2e-05   23.5   9.0      0.018   15.6   1.2    2.8  3  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I
     0.0023   18.1   5.5       0.23   11.7   0.6    2.2  2  Fer4_18   4Fe-4S dicluster domain
  ------ inclusion threshold ------
       0.12   13.2   9.6        4.3    8.2   1.3    2.2  4  Fer4_22   4Fe-4S dicluster domain
       0.18   12.5   0.2       0.18   12.5   0.2    3.3  3  Fer4_15   4Fe-4S single cluster domain
       0.28   10.4   0.0       0.37   10.0   0.0    1.1  1  SPATA9    Spermatogenesis-associated protein 9


Domain annotation for each model (and alignments):
>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   3.9   3.1e-10   3.2e-07       6      24 .]      52      70 ..      50      70 .. 0.95
   2 !   32.8   0.8   3.6e-11   3.8e-08       1      21 [.      92     112 ..      92     115 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 3.1e-10
                TTSSS-THHHHHSTTTEEE CS
        Fer4  6 ekCigCGaCvevCPvgAIt 24
                ekCigC +C+ +CP +AI+
  KIR64700.1 52 EKCIGCELCAWACPADAIY 70
                9*****************6 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 3.6e-11
                 EEEETTTSSS-THHHHHSTTT CS
        Fer4   1 vvideekCigCGaCvevCPvg 21 
                 ++i++ +Ci+CG+C+e+CP+ 
  KIR64700.1  92 YQINYARCIFCGLCIEACPTR 112
                 589****************97 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   6.8   4.4e-14   4.6e-11       1      50 [.      53     111 ..      53     113 .. 0.79

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 4.4e-14
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenekgt.........ekveidpekClgCgaCvavCPt 50 
                 +CigC+ C+ aCp++ai+++  +n +++           ++i++ +C++Cg C+++CPt
  KIR64700.1  53 KCIGCELCAWACPADAIYVEGGDNTEENrlspgerhaSVYQINYARCIFCGLCIEACPT 111
                 7*****************99654444333344444447789*****************8 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   8.6   1.3e-11   1.3e-08       7      56 .]      52     110 ..      49     110 .. 0.95
   2 !   19.8   1.4     6e-07   0.00063       3      23 ..      93     113 ..      91     130 .. 0.69

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.3e-11
     Fer4_10   7 dtCirCgkCvkaCPadl.........tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 ++Ci+C+ C  aCPad+         ++++ ++ +   ++ ++++ +C++cg C+eaCP
  KIR64700.1  52 EKCIGCELCAWACPADAiyveggdntEENRLSPGERHASVYQINYARCIFCGLCIEACP 110
                 79***********************999999999999999999***************9 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 6e-07
     Fer4_10   3 vidddtCirCgkCvkaCPadl 23 
                 +i+  +Ci Cg C +aCP+  
  KIR64700.1  93 QINYARCIFCGLCIEACPTRS 113
                 578899999999999999955 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.4   5.4e-06    0.0057       1      20 [.      53      72 ..      53      94 .. 0.81
   2 !   21.9   0.1   2.4e-07   0.00025       1      29 [.      98     126 ..      98     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5.4e-06
     Fer4_16  1 rCgtCgkCaevCPtnaikek 20
                +C++C+ Ca +CP++ai  +
  KIR64700.1 53 KCIGCELCAWACPADAIYVE 72
                5****************866 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 2.4e-07
     Fer4_16   1 rCgtCgkCaevCPtnaikekkekeieare 29 
                 rC+ Cg C+e+CPt+ +++ +e+e++ ++
  KIR64700.1  98 RCIFCGLCIEACPTRSLTMSNEYELARDN 126
                 6*******************777765443 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.8   5.2e-06    0.0055      28      51 .]      46      69 ..      30      69 .. 0.72
   2 !   32.6   8.1   6.1e-11   6.4e-08       1      49 [.      53     112 ..      53     114 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.2e-06
      Fer4_9 28 lraaseeaCigCgaCveaCpkgai 51
                 + ++ e+CigC+ C+ aCp +ai
  KIR64700.1 46 RHPDGLEKCIGCELCAWACPADAI 69
                33344489************9987 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 6.1e-11
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase...........eaCigCgaCveaCpkg 49 
                 kC+gC  C  aCpa+++  + + ++ ++r                +Ci+Cg C+eaCp+ 
  KIR64700.1  53 KCIGCELCAWACPADAIYVEGGDNTEENRLSPGerhasvyqinyARCIFCGLCIEACPTR 112
                 7***************97777777766655444689**********************85 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.5   3.3e-07   0.00034      39      57 ..      52      69 ..      40      71 .. 0.84
   2 !   17.5   0.3   3.1e-06    0.0033       3      23 ..      94     114 ..      86     127 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.3e-07
     Fer4_21 39 deCvGCnlCssvCPvedci 57
                ++C+GC+lC+  CP  d+i
  KIR64700.1 52 EKCIGCELCAWACPA-DAI 69
                89************5.887 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 3.1e-06
     Fer4_21   3 idedkCigCgkCliaCedtsh 23 
                 i+ ++Ci Cg+C+ aC++ s 
  KIR64700.1  94 INYARCIFCGLCIEACPTRSL 114
                 777888888888888887664 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   3.4   1.1e-07   0.00011       7      24 .]      52      69 ..      51      69 .. 0.96
   2 !   17.5   1.2   3.1e-06    0.0032       4      21 ..      94     111 ..      93     114 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.1e-07
      Fer4_6  7 dkCigCgdCvrvCPegai 24
                +kCigC+ C+ +CP++ai
  KIR64700.1 52 EKCIGCELCAWACPADAI 69
                79**************98 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 3.1e-06
      Fer4_6   4 idpdkCigCgdCvrvCPe 21 
                 i++ +Ci Cg C+ +CP+
  KIR64700.1  94 INYARCIFCGLCIEACPT 111
                 8999*************8 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   2.2   3.3e-07   0.00035       7      22 .]      51      66 ..      48      66 .. 0.92
   2 !   18.1   1.8   1.9e-06     0.002       3      22 .]      92     111 ..      90     111 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.3e-07
      Fer4_2  7 tdrCigCgaCvsaCPa 22
                 ++CigC+ C +aCPa
  KIR64700.1 51 LEKCIGCELCAWACPA 66
                589************8 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.9e-06
      Fer4_2   3 vvvdtdrCigCgaCvsaCPa 22 
                 ++++ +rCi Cg C+ aCP+
  KIR64700.1  92 YQINYARCIFCGLCIEACPT 111
                 899****************7 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   1.0   3.5e-05     0.037       2      17 ..      51      69 ..      49      97 .. 0.69
   2 !   18.6   0.3   1.8e-06    0.0019       3      34 ..      97     129 ..      95     181 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.5e-05
      Fer4_8  2 lekCieCgaCqsaCp...v 17
                lekCi+C++C  aCp   +
  KIR64700.1 51 LEKCIGCELCAWACPadaI 69
                6899999999999995551 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.8e-06
      Fer4_8   3 ekCieCgaCqsaCpvlrrtk.khlldargeaae 34 
                  +Ci Cg+C +aCp+ + t  ++   ar+++++
  KIR64700.1  97 ARCIFCGLCIEACPTRSLTMsNEYELARDNRQD 129
                 58************9999888899999998887 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   4.1   8.5e-05      0.09       1      15 []      54      68 ..      54      68 .. 0.95
   2 !   17.6   2.5   5.2e-06    0.0055       1      14 [.      99     112 ..      99     113 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.5e-05
      Fer4_3  1 CtgCgaCvevCPvgA 15
                C+gC++C  +CP +A
  KIR64700.1 54 CIGCELCAWACPADA 68
                ************887 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 5.2e-06
      Fer4_3   1 CtgCgaCvevCPvg 14 
                 C+ Cg+C e+CP++
  KIR64700.1  99 CIFCGLCIEACPTR 112
                 ************85 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.9   6.6e-06    0.0069       2      16 ..      52      66 ..      51      74 .. 0.92
   2 !   12.2   1.4   0.00019       0.2       2      17 .]      97     112 ..      96     117 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.6e-06
      Fer4_4  2 erCigCgsCvaaCPq 16
                e+CigC  C  aCP 
  KIR64700.1 52 EKCIGCELCAWACPA 66
                89************6 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00019
      Fer4_4   2 erCigCgsCvaaCPqg 17 
                  rCi Cg C+ aCP++
  KIR64700.1  97 ARCIFCGLCIEACPTR 112
                 59************75 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.1   2.7e-05     0.028      41      59 ..      49      67 ..      24      69 .. 0.80
   2 !   18.1  10.4   2.8e-06     0.003       1      58 [.      53     111 ..      53     113 .. 0.78
   3 !   13.0   1.4   0.00011      0.11       1      28 [.      98     125 ..      98     137 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.7e-05
     Fer4_17 41 ekaslCieCgeCerkCPqg 59
                +  ++Ci+C++C+ +CP++
  KIR64700.1 49 DGLEKCIGCELCAWACPAD 67
                57899************86 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 2.8e-06
     Fer4_17   1 rCiqCgyClpeCpsyeaydnepkkllraakl.glleeaekeekaslCieCgeCerkCPq 58 
                 +Ci+C+ C+ +Cp  ++y +  +++ ++  + g+ ++   + +  +Ci Cg+C ++CP 
  KIR64700.1  53 KCIGCELCAWACPADAIYVEGGDNTEENRLSpGERHASVYQINYARCIFCGLCIEACPT 111
                 6*************999888777766664442544444445799**************6 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 0.00011
     Fer4_17   1 rCiqCgyClpeCpsyeaydnepkkllra 28 
                 rCi Cg C+++Cp+   + +++ +l+r+
  KIR64700.1  98 RCIFCGLCIEACPTRSLTMSNEYELARD 125
                 799**********987766666666654 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.2   1.7e-05     0.018       4      18 ..      52      66 ..      49      77 .. 0.91
   2 !   12.3   0.4   0.00018      0.19       2      18 ..      95     111 ..      94     129 .. 0.88
   3 ?   -1.9   0.0         5   5.2e+03      29      49 ..     185     207 ..     179     208 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.7e-05
     Fer4_13  4 dtCiacgaCvelaPd 18
                ++Ci+c++C++++P 
  KIR64700.1 52 EKCIGCELCAWACPA 66
                79************5 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00018
     Fer4_13   2 DrdtCiacgaCvelaPd 18 
                 +  +Ci cg+C e++P 
  KIR64700.1  95 NYARCIFCGLCIEACPT 111
                 6679************5 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 5
     Fer4_13  29 svvaeqpts..eeekadaeeAad 49 
                 ++v e+p    +  +++a++Aa+
  KIR64700.1 185 YQVEEHPGVtfPGAEQQAQRAAA 207
                 56666555445556778888876 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.5    0.0016       1.7      52      74 ..      45      67 ..      35      78 .. 0.81
   2 !   11.7   0.6   0.00022      0.23      53      73 ..      91     111 ..      68     115 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0016
     Fer4_18 52 erkekgagdcidcescvkvcPtg 74
                +r+ +g  +ci ce c   cP +
  KIR64700.1 45 NRHPDGLEKCIGCELCAWACPAD 67
                56778889999999999999975 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00022
     Fer4_18  53 rkekgagdcidcescvkvcPt 73 
                   + + + ci c+ c++ cPt
  KIR64700.1  91 VYQINYARCIFCGLCIEACPT 111
                 345667888888888888887 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.3    0.0041       4.3      78      94 ..      50      66 ..      36      69 .. 0.77
   2 ?    6.7   1.6     0.012        13       1      14 [.      53      66 ..      53      90 .. 0.74
   3 ?    8.2   2.0    0.0041       4.3      76      94 ..      93     111 ..      82     113 .. 0.74
   4 ?    7.8   2.1    0.0058       6.1       1      18 [.      98     115 ..      98     130 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0041
     Fer4_22 78 gesgCvGCgRCieacpv 94
                g ++C+GC  C  acp+
  KIR64700.1 50 GLEKCIGCELCAWACPA 66
                56788888888888886 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.012
     Fer4_22  1 rClsCgaCtlvCpt 14
                +C++C  C+ +Cp+
  KIR64700.1 53 KCIGCELCAWACPA 66
                57777777777765 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0041
     Fer4_22  76 kfgesgCvGCgRCieacpv 94 
                 +++   C+ Cg Cieacp+
  KIR64700.1  93 QINYARCIFCGLCIEACPT 111
                 5566778888888888875 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0058
     Fer4_22   1 rClsCgaCtlvCptCsCf 18 
                 rC+ Cg C  +Cpt s +
  KIR64700.1  98 RCIFCGLCIEACPTRSLT 115
                 799999999999996654 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   5.9      0.13   1.3e+02       6      19 ..      52      65 ..      50      79 .. 0.86
   2 ?   12.5   0.2   0.00017      0.18       3      21 ..      94     112 ..      93     136 .. 0.84
   3 ?   -1.9   0.0       5.4   5.7e+03      47      57 ..     197     207 ..     187     208 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.13
     Fer4_15  6 daCigcglCvaeap 19
                ++Cigc+lC+ ++p
  KIR64700.1 52 EKCIGCELCAWACP 65
                68*******99997 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00017
     Fer4_15   3 vDrdaCigcglCvaeapev 21 
                 ++  +Ci cglC++++p++
  KIR64700.1  94 INYARCIFCGLCIEACPTR 112
                 56789***********975 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 5.4
     Fer4_15  47 deeeaaqeAar 57 
                   e++aq+Aa+
  KIR64700.1 197 GAEQQAQRAAA 207
                 56889999996 PP

>> SPATA9  Spermatogenesis-associated protein 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00036      0.37     145     196 ..      89     140 ..      85     153 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00036
      SPATA9 145 tsilyasyaaliylavcvnavlekvkkilqeeesirqnrkeseesrkafsep 196
                 +s+    ya  i+  +c++a   +  ++++e e  r nr++   ++  +  p
  KIR64700.1  89 ASVYQINYARCIFCGLCIEACPTRSLTMSNEYELARDNRQDLIFTKEQLLAP 140
                 5777789********************************9876666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1430.38
//
Query:       KIR64701.1  [L=256]
Description: NADH:ubiquinone oxidoreductase subunit J [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.7e-34  116.5  16.6    9.8e-34  116.1  16.6    1.1  1  Oxidored_q3  NADH-ubiquinone/plastoquinone oxidoreductase cha
  ------ inclusion threshold ------
      0.092   13.0   7.3       0.41   10.9   6.5    2.0  2  EI24         Etoposide-induced protein 2.4 (EI24)
       0.49    9.2   2.5       0.78    8.5   1.9    1.6  2  Otopetrin    Otopetrin


Domain annotation for each model (and alignments):
>> Oxidored_q3  NADH-ubiquinone/plastoquinone oxidoreductase chain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1  16.6   1.6e-37   9.8e-34       1     144 []      31     177 ..      31     177 .. 0.93

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 1.6e-37
                  HHHHHHH-SBHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHIIIIIHHHHHHHHHHHSSTTS----TTCHHHHHHHHHHHHHHHHHHHTT--.... CS
  Oxidored_q3   1 gallvitsknpvysalfLilsfvgvaglfillgaeFlallqilvYvGAilvlflFvimllesaeeeepeslsrslalaalligllllallllllles. 97 
                  ga+++i ++n v+sal+L+l+++++ ++++l+  +F++++qi+vY+GAi++lflFv+ml+ ++++++  ++ r++++aa+++gl+++ l+   l +  
   KIR64701.1  31 GAIGMIAARNAVHSALWLVLTMLCLGVFYVLQAGPFIGMVQIIVYTGAIMMLFLFVLMLVGRDSSDSLIETLRGQRVAAVVLGLGFAGLVGGGLYRGl 128
                  69**********************************************************999**************************777766667 PP

                  .....--------TT-HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHC CS
  Oxidored_q3  98 ..sssavdaqvadvsnieaigsllftkyllpfelasllLLvaligaivl 144
                     s+   +q++ ++n++ i++llftky+++fel+s lL++a +ga+vl
   KIR64701.1 129 ggVSAVGLEQANAEGNVQGIARLLFTKYVFAFELTSALLITAAVGAMVL 177
                  753334467788899********************************97 PP

>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   6.5   6.8e-05      0.41      64     168 ..      22     120 ..       6     126 .. 0.78
   2 ?    0.8   0.0     0.086   5.1e+02      52      81 ..     154     184 ..     131     222 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.8e-05
                 HHHHHH..HHHHHHHHHH.HHCCTTSHHHHHHHHHHHHHHHHHHHHH..HHTTHHH....HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTHHHHH CS
        EI24  64 llaapf..ygllaekvekrhlglvkslaeslkslllllllllvllpl..liPvvglilsplllswltayfycfeyldlaagrsleerrallerrrayfl 158
                 ++ ap+  +g++  +++++ +       +s+  l+l++l+l v+++l  + P++g + +++ ++ +   f+++ +l      s ++ ++ l+ +r  ++
  KIR64701.1  22 WILAPLalLGAIGMIAARNAV-------HSALWLVLTMLCLGVFYVLqaG-PFIGMVQIIVYTGAIMMLFLFVLMLVGRD--SSDSLIETLRGQRVAAV 110
                 555555554444444444334.......7788888888888899999855.****9999998888888878888877777..***************** PP

                 HHHHHHHHHT CS
        EI24 159 gfGllvslll 168
                  +Gl +++l+
  KIR64701.1 111 VLGLGFAGLV 120
                 ****999997 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.086
                 HHHHHHHH.HHHHHHHHHHHHHHHHHHHH.H CS
        EI24  52 llplwlfp.lvalllaapfygllaekvekrh 81 
                 + +++ f  + all+ a +  ++ +++e+r+
  KIR64701.1 154 TKYVFAFElTSALLITAAVGAMVLAHIERRR 184
                 3334444466777777777777777777655 PP

>> Otopetrin  Otopetrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.9   0.00013      0.78     248     294 ..      42      88 ..      35     124 .. 0.84
   2 ?   -1.6   0.0      0.15     9e+02     184     203 ..     166     183 ..     139     203 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00013
   Otopetrin 248 flglLllvltiislilFfvlvrkpklsslailladlselvllalaii 294
                 + + L lvlt+++l +F+vl+  p +  + i++++ + ++l++++++
  KIR64701.1  42 VHSALWLVLTMLCLGVFYVLQAGPFIGMVQIIVYTGAIMMLFLFVLM 88 
                 677899******************88888888887766666555443 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.15
   Otopetrin 184 sligaavlyvmwknigrqpk 203
                  li aav  ++  +i+r  +
  KIR64701.1 166 LLITAAVGAMVLAHIER--R 183
                 26677777777777777..2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       998  (0.055664); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1936.03
//
Query:       KIR64702.1  [L=99]
Description: NADH:ubiquinone oxidoreductase subunit K [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-24   83.2  10.2    1.1e-23   82.9  10.2    1.0  1  Oxidored_q2      NADH-ubiquinone/plastoquinone oxidoreductase
  ------ inclusion threshold ------
       0.16   12.0   1.3       0.26   11.2   0.1    1.9  2  Gram_pos_anchor  LPXTG cell wall anchor motif
       0.59    9.6   5.1        3.5    7.1   1.2    2.2  2  ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family


Domain annotation for each model (and alignments):
>> Oxidored_q2  NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9  10.2   1.8e-27   1.1e-23       2     102 ..       6      93 ..       5      96 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 1.8e-27
                  HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHC.............TTSCGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-B CS
  Oxidored_q2   2 lllliallfliGlygvllrrnllkvliglelisnavnlllvlagvftegtlvitnpatefadplpqalvLtaivigaaetavgLallvrlyreygtdd 99 
                  +l+l+a+lf+iG++gvl+rrn++  ++++el++na+nl+lv++++               +d+ +q++ ++++v++aae++vgLa++++++r++++ +
   KIR64702.1   6 YLVLAAVLFTIGAVGVLVRRNAIVLFMCVELMLNAANLTLVTFSRIN-------------GDLNGQIMSFFVMVVAAAEVVVGLAIIMSIFRTRRSAS 90 
                  899*******************************************9.............*************************************9 PP

                  CCG CS
  Oxidored_q2 100 vqe 102
                  v++
   KIR64702.1  91 VDD 93 
                  997 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   4.4e-05      0.26      18      38 ..       5      25 ..       2      27 .. 0.92
   2 ?   -1.1   0.1      0.32   1.9e+03      23      27 ..      74      78 ..      63      88 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.4e-05
                     XXXXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor 18 ifltaaGllallggllLlvkr 38
                     ++l +a++l ++g++++lv+r
       KIR64702.1  5 YYLVLAAVLFTIGAVGVLVRR 25
                     6899****************9 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.32
                     XXXXX CS
  Gram_pos_anchor 23 aGlla 27
                     +Gl++
       KIR64702.1 74 VGLAI 78
                     33333 PP

>> ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.2   0.00059       3.5      18      35 ..       7      24 ..       7      32 .. 0.89
   2 ?    4.1   0.1    0.0051        30      18      34 ..      65      81 ..      65      90 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00059
                     HHHHHHHHHHHHHHHHCC CS
  ATP1G1_PLM_MAT8 18 LifAglLfivGiliilSk 35
                     L++A++Lf +G + +l +
       KIR64702.1  7 LVLAAVLFTIGAVGVLVR 24
                     89*********9988755 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0051
                     HHHHHHHHHHHHHHHHC CS
  ATP1G1_PLM_MAT8 18 LifAglLfivGiliilS 34
                     +++A+   +vG++ii+S
       KIR64702.1 65 MVVAAAEVVVGLAIIMS 81
                     678888899*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       980  (0.05466); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 701.19
//
Query:       KIR64703.1  [L=647]
Description: NADH-quinone oxidoreductase subunit L [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-82  276.3  14.6    2.6e-82  276.3  14.6    2.3  3  Proton_antipo_M  Proton-conducting membrane transporter
    4.4e-23   81.1   0.6    4.4e-23   81.1   0.6    2.4  2  Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), 
    0.00034   20.3   0.8     0.0097   15.5   0.0    3.1  3  NADH5_C          NADH dehydrogenase subunit 5 C-terminus
     0.0027   17.4   0.0     0.0048   16.5   0.0    1.3  1  Proton_antipo_C  NADH-dehyrogenase subunit F, TMs, (complex I
  ------ inclusion threshold ------
       0.92    9.1   3.6        7.8    6.1   0.5    2.8  2  PIRT             Phosphoinositide-interacting protein family


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       1.2   4.2e+03      38      53 ..      14      29 ..      12      35 .. 0.79
   2 ?   -1.6   0.4      0.35   1.2e+03      34      71 ..     103     140 ..     100     150 .. 0.80
   3 !  276.3  14.6   7.3e-86   2.6e-82       2     292 ..     152     439 ..     151     440 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.2
  Proton_antipo_M 38 lflltllgsliLLlgi 53
                     ++  +llgs+ LL++i
       KIR64703.1 14 AAASGLLGSFWLLVAI 29
                     5667899999999998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.35
  Proton_antipo_M  34 AslklflltllgsliLLlgilllynltgtlefeelska 71 
                      A++ ++l+t +g li L+++ ++ + +g   f + ++ 
       KIR64703.1 103 AAVFVLLITGVGFLIHLYAVEYMAHDEGRRRFFAYFNL 140
                      78888999999999999999999999998888877776 PP

  == domain 3  score: 276.3 bits;  conditional E-value: 7.3e-86
  Proton_antipo_M   2 ndLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelskalelglnslelllllllllvgllvK 95 
                      n+ ++ly+g+E+v+l++ylLi +w+ +p+++ A+ k+fl++++g+  L +gi+++++  gt++ +e+++     l   ++l+l llll+g++ K
       KIR64703.1 152 NNYVMLYFGWEGVGLASYLLISFWYGRPSAATAGKKAFLMNRVGDAGLAIGIFIMFATLGTTQYDEVFNG-VGSLTGTTVLVLGLLLLLGAAGK 244
                      6889******************************************************************.677788899999*********** PP

  Proton_antipo_M  96 saqvplhlWlpdayveaPtpvsall.AatlvkagvlllirlllllavssneisqlllilaiismllgslvalaqtdiKrllAySsishlGymli 188
                      s+q+pl+ Wlpda +e+Ptpvsal+ Aat+v+agv+l++r +++++ ++ +++ +++ ++++++llg +++ a+ diKr+lA+S++s++Gym++
       KIR64703.1 245 SGQFPLQAWLPDA-MEGPTPVSALIhAATMVTAGVYLIARSNPVFS-ANSTLQLVVVSVGALTLLLGCIIGAAKDDIKRVLAWSTVSQIGYMFL 336
                      *************.********************************.*********************************************** PP

  Proton_antipo_M 189 alavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPptagFlskfliLeaavavslil 282
                      ++++ +  ++++aiihll+h++fka++Fl agsv++ ++++ dir+ ggL+k+m ++ ++++++ l++ GlPp++g++sk  i+ aa+  + ++
       KIR64703.1 337 GVGL-GGGAYALAIIHLLAHGFFKANMFLGAGSVMHGMNDQVDIRRFGGLSKYMKVTWITFMMGWLAIIGLPPLSGYFSKEPIIVAAFTRDDWT 429
                      ****.88889************************************************************************************ PP

  Proton_antipo_M 283 lvlavvasvl 292
                      ++l+  a++l
       KIR64703.1 430 AWLFGGAALL 439
                      ***9777766 PP

>> Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.6   1.2e-26   4.4e-23       1      58 []      82     139 ..      82     139 .. 0.98
   2 ?   -4.7   2.2         5   1.8e+04      27      38 ..     522     533 ..     517     533 .. 0.75

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 1.2e-26
  Proton_antipo_N   1 lftWlsvgglsieigfllDklsalmllvvtfvsllvhlYSigYMaddegyqRFfayls 58 
                      l++++ vg+l++++g+l+D+l a+++l++t+v++l+hlY+++YMa+deg++RFfay++
       KIR64703.1  82 LWDFIAVGDLHVDFGLLFDPLAAVFVLLITGVGFLIHLYAVEYMAHDEGRRRFFAYFN 139
                      699*****************************************************86 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 5
  Proton_antipo_N  27 lvvtfvsllvhl 38 
                      +v+t++sl+v +
       KIR64703.1 522 TVITILSLVVTI 533
                      689999998865 PP

>> NADH5_C  NADH dehydrogenase subunit 5 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       1.7   6.1e+03      57      79 ..     287     309 ..     267     319 .. 0.51
   2 !   15.5   0.0   2.7e-06    0.0097       1      50 [.     447     497 ..     447     509 .. 0.87
   3 ?    1.6   0.0     0.052   1.9e+02      33      53 ..     524     544 ..     510     553 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.7
     NADH5_C  57 vitlplllKllallvtilGlllg 79 
                 v+    +l l+++ v  l lllg
  KIR64703.1 287 VFSANSTLQLVVVSVGALTLLLG 309
                 33333344444444433333333 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 2.7e-06
     NADH5_C   1 YSlRliyyvllgsprf.sslspineenptllnpilrLalgsiiaGsllswl 50 
                 Y +Rl+++++ g  r    + + +e+ + ++ p+++La+gs++aG l+ w+
  KIR64703.1 447 YMTRLFVLTFHGPKRWtEDIEHPHESPKLMTIPLILLAIGSVVAGGLMVWN 497
                 77899999999988851457788999999********************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.052
     NADH5_C  33 ilrLalgsiiaGsllswlifp 53 
                 i++L+l++ iaG+ l w +f 
  KIR64703.1 524 ITILSLVVTIAGAGLAWSLFR 544
                 678888888888888888876 PP

>> Proton_antipo_C  NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.4e-06    0.0048      87     177 ..     463     543 ..     445     557 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.4e-06
  Proton_antipo_C  87 kktlsyPhEsdntmlfpllvLvlftlfvGliGipfnqegidldilskwLtpsinllhknsnesvdwyefltnaifSvsialfGifiAsllY 177
                      +++++ PhEs++ m++pl++L++ +++ G + + +n      d l +wLtp++    ++++    ++   + +i+S+ +++ G  +A  l+
       KIR64703.1 463 TEDIEHPHESPKLMTIPLILLAIGSVVAGGLMV-WN------DGLASWLTPVLGEAGEEHHA---VLSHTVITILSLVVTIAGAGLAWSLF 543
                      457899**********************98855.44......67999999988777776665...55555666667666666666666555 PP

>> PIRT  Phosphoinositide-interacting protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.026        94      48      99 ..     187     239 ..     173     242 .. 0.72
   2 ?    6.1   0.5    0.0022       7.8      50      95 ..     296     340 ..     266     353 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.026
        PIRT  48 kpiivlsvGgavfllGvvittlsr.nstlknkdkevfklsGpaflslGlmllv 99 
                 k  ++  vG a + +G+ i   +  ++  ++  + v  l+G ++l lGl+ll+
  KIR64703.1 187 KAFLMNRVGDAGLAIGIFIMFATLgTTQYDEVFNGVGSLTGTTVLVLGLLLLL 239
                 56666678888888888776554403344455566779***********9986 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0022
        PIRT  50 iivlsvGgavfllGvvittlsrnstlknkdkevfklsGpaflslGl 95 
                 ++v+svG+  +llG +i +  ++++ +    ++   +G +fl +Gl
  KIR64703.1 296 LVVVSVGALTLLLGCIIGAA-KDDIKRVLAWSTVSQIGYMFLGVGL 340
                 79***************997.6677666666666667888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 4270.77
//
Query:       KIR64704.1  [L=511]
Description: NADH-quinone oxidoreductase subunit M [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-58  197.4  20.5    2.9e-58  197.4  20.5    2.1  2  Proton_antipo_M  Proton-conducting membrane transporter
  ------ inclusion threshold ------
      0.033   14.4   0.4        4.8    7.5   0.0    3.3  2  DUF4536          Domain of unknown function (DUF4536)
        5.3    7.2  12.5      0.049   13.7   2.7    2.8  3  Oxidored_q5_N    NADH-ubiquinone oxidoreductase chain 4, amin


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   3.3     0.073   4.4e+02      43     105 ..      36     105 ..      32     132 .. 0.69
   2 !  197.4  20.5   4.8e-62   2.9e-58       1     291 [.     134     421 ..     134     423 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.073
  Proton_antipo_M  43 llgsliLLlgilllynltg.....tlefeelskalelglnslelll..llllllvgllvKsaqvplhlWl 105
                      ++g+++L+l+++++ +l+       l+f+e  + + ++ +  ++ +  ++l++l+ ++v +++v l  W 
       KIR64704.1  36 AFGWSLLVLALSVVMWLAFktggeRLQFRESYTWIPQWDARFTFAAdgIALVMLMLIAVLVPLVILASWH 105
                      6899999999986666542223688999999999977777666554114555555666677888888885 PP

  == domain 2  score: 197.4 bits;  conditional E-value: 4.8e-62
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltg.tlefeelskalelglnslelllllllllvgll 93 
                      a d++l+y+++E++l+p+y+Lig ++ + ++ +A++k+fl++l+g l++L +++ l+ + g t + ++l ++    ++  +  +l+l ++++++
       KIR64704.1 134 AADVFLFYVFFEVMLVPMYFLIGSYGGH-QRQYAAVKFFLYSLVGGLFMLAAVIGLWVVGGkTFDWQALTQI---DISTGTERWLFLGFFLAFA 223
                      689**********************999.8889****************************88899999999...9999999************ PP

  Proton_antipo_M  94 vKsaqvplhlWlpdayveaPtpvsallAatlvkagvlllirllllla.vssneisqlllilaiismllgslvalaqtdiKrllAySsishlGym 186
                      +K++ +p+h+Wlpda  +aP+   all ++l k+g ++++r  l+l+  +s++ + + l+l++i++++++l+a+ q+d+Krl+ y si+h G++
       KIR64704.1 224 IKAPFFPFHTWLPDAGGAAPAGAAALLVGVLDKVGTFGILRYCLPLFpEASKWFAPYALALGVIGIIYAALLAVGQNDLKRLVSYTSIAHFGFI 317
                      ***************99************************99888889********************************************* PP

  Proton_antipo_M 187 lialavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPptagFlskfliLeaavavsl 280
                       +++++ t ++ ++a++++l h+l + llFl++g +  +r  +  i + gg  k +P+la vl+++ l+  +lP+ta F+s+fl+L + + v+ 
       KIR64704.1 318 GVGIFAFTTQAGTGAVLYMLNHGLATGLLFLVVGML-VARRGSALISDFGGAGKLVPLLAGVLFFAGLASLALPGTAPFVSEFLVLIGTFTVNK 410
                      ******99999**********************555.66669**************************************************** PP

  Proton_antipo_M 281 illvlavvasv 291
                       ++v+a+++++
       KIR64704.1 411 PVAVIATLGII 421
                      ****9977665 PP

>> DUF4536  Domain of unknown function (DUF4536)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2      0.02   1.2e+02      11      22 ..     314     325 ..     310     328 .. 0.86
   2 ?    7.5   0.0    0.0008       4.8       7      35 ..     414     442 ..     414     449 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.02
     DUF4536  11 sGLigaGvYvyv 22 
                 +G+ig+G++++ 
  KIR64704.1 314 FGFIGVGIFAFT 325
                 8********985 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0008
     DUF4536   7 lvSGsGLigaGvYvyvqarrrlklggkfg 35 
                 +++ +G i a++Yv+++ +r+++ + +++
  KIR64704.1 414 VIATLGIILAAAYVLWMVQRTTQGTLNPA 442
                 57889***************987666655 PP

>> Oxidored_q5_N  NADH-ubiquinone oxidoreductase chain 4, amino terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.7   8.1e-06     0.049      52     107 ..      74     128 ..      31     131 .. 0.83
   2 ?   -1.5   0.2      0.44   2.6e+03       5      20 ..     142     157 ..     138     199 .. 0.62
   3 ?   -3.0   0.2       1.3   7.6e+03      25      43 ..     413     431 ..     396     440 .. 0.47

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.1e-06
  Oxidored_q5_N  52 nlsyllglDslSapLilLSlWllpLmilASqkhlkkepknrqrlFllllilLlllL 107
                       ++++ D + + +++L + l+pL+ilAS++  ++ +k    ++  ll++L  ++
     KIR64704.1  74 DARFTFAADGIALVMLMLIAVLVPLVILASWHDAES-SKRSIPVYFALLLVLESTM 128
                    5677899*************************9999.7777788888888887665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.44
  Oxidored_q5_N   5 llptlmliplvllskk 20 
                    +++ +ml+p+ +l+ +
     KIR64704.1 142 VFFEVMLVPMYFLIGS 157
                    5556666666666543 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.3
  Oxidored_q5_N  25 ststlvslllallslllln 43 
                    +++ ++ ++la+  +l++ 
     KIR64704.1 413 AVIATLGIILAAAYVLWMV 431
                    2344444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3471.56
//
Query:       KIR64705.1  [L=517]
Description: NADH:ubiquinone oxidoreductase subunit N [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-69  234.8  20.3    1.2e-69  234.8  20.3    1.6  2  Proton_antipo_M  Proton-conducting membrane transporter
  ------ inclusion threshold ------
        5.8    7.5  13.8        0.1   13.1   2.8    3.3  3  UPF0715          Uncharacterised protein family (UPF0715)


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2      0.38   3.4e+03     223     256 ..      58      91 ..      38      96 .. 0.51
   2 !  234.8  20.3   1.3e-73   1.2e-69       1     291 [.     151     452 ..     151     454 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.38
  Proton_antipo_M 223 iyerektrdirayggLakkmPilalvllvlllsl 256
                      +  + + r i+a g+La   P+l+l  ++l+l+ 
       KIR64705.1  58 VIFNADDRLITAGGALAVDGPTLFLQGAILVLAA 91 
                      2223355555555666666666655555555544 PP

  == domain 2  score: 234.8 bits;  conditional E-value: 1.3e-73
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkk.kpksleAslklflltllgsliLLlgilllynltg.......tlefeelskal.elglnslelllll 85 
                      andLl+++++lE+++lplylL +l+++ +  s eA++k+fll++ +s ++L+g++l+y++t+        ++f ++  a+ e  +++  l++++
       KIR64705.1 151 ANDLLTMFIALEVFSLPLYLLCALARRrRLLSQEAAMKYFLLGAYASAFFLFGVALVYGFTSgipgrpaGVDFATIHAAVgESPASQVLLFAGM 244
                      89*******************999765167899****************************999999999*********966666666677777 PP

  Proton_antipo_M  86 llllvgllvKsaqvplhlWlpdayveaPtpvsallAatlvkagvlllirllllla..vssneisqlllilaiismllgslvalaqtdiKrllAy 177
                       ll +gll+K+a++p+h+W+pd+y++aPtpv+ ++Aa   k+++++ + +++ +a   ++++ + +l ++a+++ml+g+++a++qtdiKrllAy
       KIR64705.1 245 ALLSIGLLFKAAAAPFHVWTPDVYQGAPTPVTGFMAA-CTKVAAFGALLRVFHVAfaGAAWDFTPVLGAVAVLTMLVGAVLAVTQTDIKRLLAY 337
                      78889******************************66.666666655444444333599999******************************** PP

  Proton_antipo_M 178 SsishlGymlialavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPptagFlskfli 271
                      Ssi+  Gy+l+++++ + +g+++ +++l +++++ ++ F+++  v  +  +++ + + +gL k+ P++a+v++++ll+ aG+P+t+gF+skf++
       KIR64705.1 338 SSIANAGYLLVGVLAPSRDGLAGTMFYLAAYGFSVLAAFAVVTLVRDADGEATHLSRWAGLGKRSPFFAAVFTFILLAFAGIPLTSGFMSKFAV 431
                      ******************************************99988899******************************************** PP

  Proton_antipo_M 272 Leaavavslillvla.vvasv 291
                      ++ a+++++ +lv+a v++s+
       KIR64705.1 432 FAPALDADQAWLVVAgVLTSM 452
                      ***************777664 PP

>> UPF0715  Uncharacterised protein family (UPF0715)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.27   2.4e+03      85     111 ..      35      61 ..      13      63 .. 0.62
   2 ?   13.1   2.8   1.2e-05       0.1      13      83 ..     132     205 ..     128     212 .. 0.75
   3 ?   -0.5   0.6       0.2   1.8e+03      65     105 ..     334     376 ..     312     383 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.27
     UPF0715  85 psglvlfqsykyyllsivaaliyWlwd 111
                 p     + + ++ ll+++aal+  +++
  KIR64705.1  35 PRKHRHLVQLSLGLLAVLAALVMVIFN 61 
                 444555566667788888888877765 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.2e-05
     UPF0715  13 gllygllliveagfiiialvtialyaliaylvfavPlql..vlrkkakrfsvldlliy.lvvafiaaallflvl 83 
                 + +y l +++  g +i      +l ++ia  vf++Pl l   l ++++ +s+   + y l+ a+  a+ lf v 
  KIR64705.1 132 TEVYPLASFAIGGMLIFVAANDLLTMFIALEVFSLPLYLlcALARRRRLLSQEAAMKYfLLGAYASAFFLFGVA 205
                 5588889997766666555555999***********99733588999999887666551677999999999875 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.2
     UPF0715  65 lliylvvafiaaallflvlepsglv...lfqsykyyllsivaal 105
                 ll y+ +a  a  ll+ vl ps      ++   + y +s++aa+
  KIR64705.1 334 LLAYSSIAN-AGYLLVGVLAPSRDGlagTMFYLAAYGFSVLAAF 376
                 666666653.3444455555532220012223344556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3501.42
//
Query:       KIR64706.1  [L=360]
Description: geranylgeranyl pyrophosphate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-56  190.6   0.0    3.2e-56  190.2   0.0    1.1  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.2   0.0   1.8e-60   3.2e-56       3     239 ..      66     294 ..      64     308 .. 0.91

  Alignments for each domain:
  == domain 1  score: 190.2 bits;  conditional E-value: 1.8e-60
                      HHHHHHHHHHHSSS--HHHHHHHHHHHHHSCGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHCTCHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt   3 lleealeylveagGKrlRpllvllaaealkeeeeelekaavlawivellhaasLvhDDimDdsetRRGqpcahrlvGnklAindgdfllarafe 96 
                      l++ea+++lv+agGKr+Rpllv l a++   + +   ++ ++a+++el h a+L hDD+mD++ +RRG+p+a++++ n++Ai++gd+l+ara  
       KIR64706.1  66 LVTEAARHLVDAGGKRFRPLLVALGAQFGD-PAD--PRVVSAAVVMELTHLATLYHDDVMDEAAVRRGAPSANSRWTNSVAILVGDYLFARAAD 156
                      68999*************************.443..89******************************************************** PP

                      HHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC.SHHHHHHHHHHHTHHHCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt  97 llaklfekslellelfsevllqtveGqlldleeekdddlskfsleeyleivkyKTaylfalpvalaallagasdeelealkdiglelGlaFQiq 190
                      l a+l    +e+++l +++ +++v Gq+ ++   +d +     +++yl ++  KT++l+a +++ + l++gas +  eal+ +g+ +G+aFQ+ 
       KIR64706.1 157 LSADL---GPEAVRLQARTFARLVHGQIAETVGPRDGQDP---VAHYLGVIAEKTGSLIATSARFGGLFSGASAAHTEALAGYGETIGVAFQLS 244
                      *****...56********************9444344444...89***************************99999***************** PP

                      HHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HH.HHHHHHHHT CS
  polyprenyl_synt 191 DDylDlfgdpevlgKpagtDiqegkctlpilkalelaspe.qrkvlkeil 239
                      DD+lD+ +++ + gK  gtD++eg  tlp+l+al   +++    +l+eil
       KIR64706.1 245 DDLLDIASESVQSGKTPGTDLREGVPTLPVLYALASDDSDaASVRLREIL 294
                      ***********************************444330333566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2364.39
//
Query:       KIR64707.1  [L=260]
Description: IclR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-16   59.2   0.2    7.9e-16   58.1   0.2    1.5  1  IclR      Bacterial transcriptional regulator
    1.7e-13   50.2   0.3    4.2e-13   48.9   0.3    1.7  1  HTH_IclR  IclR helix-turn-helix domain
    1.3e-06   28.2   0.3    3.9e-06   26.7   0.3    1.9  1  MarR_2    MarR family
     0.0015   18.6   0.1     0.0093   16.0   0.1    2.3  1  HTH_20    Helix-turn-helix domain
     0.0032   17.4   0.0     0.0064   16.4   0.0    1.5  1  MarR      MarR family
  ------ inclusion threshold ------
      0.011   15.3   0.0       0.02   14.5   0.0    1.5  1  HTH_24    Winged helix-turn-helix DNA-binding
      0.015   15.2   0.1      0.042   13.7   0.0    1.8  2  TrmB      Sugar-specific transcriptional regulator TrmB
      0.029   14.2   0.2       0.09   12.6   0.2    1.9  1  HTH_23    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.2   3.5e-19   7.9e-16      15     126 ..     142     256 ..     137     259 .. 0.90

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 3.5e-19
                 GGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE...-TTSSEEEEEEEEEETTTSHHHH CS
        IclR  15 lyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapif...dasgevvaAvsvsgptarlteee 110
                 ++ata+GKalLa l++e++ ++l ++++ ++t++T+t+pe+++++ a+  ++G+ ++ +   +gv+c+A+ +    d+++++v A s++++++ ++ + 
  KIR64707.1 142 AHATALGKALLATLTAEQRFRYLREYGMRPFTNATLTTPEAFEADVAAGDRRGMQLELGQFRQGVACAAVLVIpdkDMERRMVLACSLPASEMMTSARV 240
                 8*********************************************************************99644467999999999999999888888 PP

                 HHHHHHHHHHHHHHHH CS
        IclR 111 lkeellalvreaArki 126
                 ++ +ll + r+ A+++
  KIR64707.1 241 VRAKLLTAARAIADAV 256
                 8888888888888776 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.3   1.9e-16   4.2e-13       1      48 [.      14      61 ..      14      65 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.9e-16
                HHHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR  1 sldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyv 48
                s++Ral++L+ +++ap +lt++++Arr+ l+ +t+++l++tL  +Gyv
  KIR64707.1 14 SVSRALRVLESVGRAPKGLTVKQIARRCELTVATTYHLVRTLAYEGYV 61
                89*********************************************9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.3   1.7e-09   3.9e-06       8      56 ..      19      66 ..      16      68 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.7e-09
                HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2  8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpg 56
                +rvL  +gr+p + ltv+++arr+ l+ +++  +++ L   G+v rr++
  KIR64707.1 19 LRVLESVGRAPKG-LTVKQIARRCELTVATTYHLVRTLAYEGYVIRRED 66
                79*********98.******************************99975 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   4.2e-06    0.0093      19      58 ..      19      65 ..      13      68 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.2e-06
                H.......STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEEC CS
      HTH_20 19 L.......araegltaselaerldlskntlsyHLrvLeeagLvevvr 58
                L       + ++glt++++a+r++l+ +t ++ +r+L+  g+v +++
  KIR64707.1 19 LrvlesvgRAPKGLTVKQIARRCELTVATTYHLVRTLAYEGYVIRRE 65
                4444666999**********************99***9899877665 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.9e-06    0.0064       6      52 ..      19      66 ..      16      67 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.9e-06
                HHHHHHHHHSTT.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEE CS
        MarR  6 fviLrilyeqgp.lsvseLakklgvskstvtrvldrLekkGlieRsks 52
                +++L+++ + +  l+v+++a++ +++ +t+  ++++L  +G++ R+ +
  KIR64707.1 19 LRVLESVGRAPKgLTVKQIARRCELTVATTYHLVRTLAYEGYVIRRED 66
                6889999999988*******************************9875 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   8.9e-06      0.02       6      47 ..      19      61 ..      16      62 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.9e-06
      HTH_24  6 rkILelLqknpr.isqreLAerlglSpstvnrrlkrLeeeGlI 47
                +++Le + + p+ ++ +++A+r+ l+++t+   ++ L  eG++
  KIR64707.1 19 LRVLESVGRAPKgLTVKQIARRCELTVATTYHLVRTLAYEGYV 61
                6788888889999************************999998 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.9   4.3e+03      38      50 ..      14      26 ..      12      30 .. 0.79
   2 ?   13.7   0.0   1.9e-05     0.042      22      60 ..      31      69 ..      28      80 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.9
                CHHHHHHHHHHCT CS
        TrmB 38 kvYevLrsLedkG 50
                +v ++Lr Le+ G
  KIR64707.1 14 SVSRALRVLESVG 26
                5788899998887 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.9e-05
                CCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTTT CS
        TrmB 22 patadeiaeelgvprskvYevLrsLedkGlVerekgrpk 60
                 +t+++ia++ ++  ++ Y  +r L   G+V r++  ++
  KIR64707.1 31 GLTVKQIARRCELTVATTYHLVRTLAYEGYVIRREDGTY 69
                689******************************997655 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2     4e-05      0.09      16      41 ..      30      55 ..      14      67 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4e-05
      HTH_23 16 eGlsvreIAreLgvsrrTvyrwlkry 41
                +Gl+v++IAr++  +  T y+ +++ 
  KIR64707.1 30 KGLTVKQIARRCELTVATTYHLVRTL 55
                3********************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.56
# Mc/sec: 1393.03
//
Query:       KIR64708.1  [L=708]
Description: phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-166  556.1   0.1   1.3e-166  555.9   0.1    1.0  1  DUF839    Bacterial protein of unknown function (DUF839)


Domain annotation for each model (and alignments):
>> DUF839  Bacterial protein of unknown function (DUF839)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  555.9   0.1    7e-171  1.3e-166       2     524 .]     113     671 ..     112     671 .. 0.95

  Alignments for each domain:
  == domain 1  score: 555.9 bits;  conditional E-value: 7e-171
      DUF839   2 gfgplaaklddlvavpegyeakvlvrwGdklfagapefd...qsaeaqekqvgynhDgmaffplsrsadeglLvvNhEytseeilf.ekekpspvtael 96 
                  f p+ +++ d+++vp+gy+  v++rwGd++++gapefd   q+a++q+kq+gyn+D+++++pl++   + lLvvNhEyt+e+++f + +++ ++t e+
  KIR64708.1 113 TFRPIPPNKLDTLVVPNGYDHSVVIRWGDPVVPGAPEFDvhaQTAAKQAKQFGYNNDFVGVLPLDKRGRRALLVVNHEYTNEDLMFpGFTSLDALTVEQ 211
                 689999999********************************************************99999***************9888999******* PP

      DUF839  97 vekelaalGvtvveisrk..agkwqvvrdsk..lnrrita.ntemrlsGPaagsellktsadaegvkilGTanNCagGtTpWGtyLtcEEnfngyfgge 190
                 v+ ++aa+G++vve++r   +g+w  v+ ++  +nrr+ta +t+++l+GPaags+ l+t+ad++g++++GT+nNCagG+TpWGt+L++EEnfn+yf g 
  KIR64708.1 212 VKVAMAAHGMSVVELERVdgTGQWRPVESGRrpYNRRVTAlATKFELTGPAAGSAWLRTAADPKGRTVVGTLNNCAGGVTPWGTVLSGEENFNQYFVGG 310
                 ***************9998899***998764238****985799**************************************************88776 PP

      DUF839 191 ea....vkadqkryGitgttgy...........erFdva...nepkkfGyvvEvdpvdprstpvkrtalGrfkHEaaavvveddkrvvvYlgdDerkey 271
                 +a    +k++  ryGi+ t++y           erFd+a    e+++fG+vvE+dp dp+s+p+k+talGrfkHE+a+v+v++ ++vv+Y+gdDer++y
  KIR64708.1 311 DAapeeLKPKLARYGINTTERYpsgnrkwdradERFDLAknpYEAHRFGWVVEIDPFDPESRPRKHTALGRFKHEGANVIVARSGHVVAYMGDDERFDY 409
                 5557889********************************9999******************************************************** PP

      DUF839 272 lYkFvsndrvgtgns....kansaLldeGtLyvakfned..................gtveWvplvegqggltaengfadqaevlvktrlaadkvGatk 348
                 lYkFvs +++ +g+s    k+n  Ll+ GtLyva+++ +                  g+++W+ lv g+  +      + +a+vl +trla dkvGatk
  KIR64708.1 410 LYKFVSDKKFMAGDSwvarKHNLTLLESGTLYVAQLEGNsaaeidgsgklpadgafnGRGRWIKLVSGNRSY---VDGMTAADVLTFTRLAGDKVGATK 505
                 *************9999999***********************************************94444...448999****************** PP

      DUF839 349 mdrpEdievnPttgevyvvltnnkkrde...skidsanpraknkyGqivrlieesrdvaatkftwdlfllaGdpedaka..asaessegndlespDnla 442
                 mdrpEd+e++  tg+vyv+ltnn+ r++    ++d+anpr+ nk+Gqi++l+e+ ++ aa++f+w+l +++Gdp+d ++  a  ++ + + +++pDn+a
  KIR64708.1 506 MDRPEDVEPSLLTGKVYVALTNNTDRGKagkAPADEANPRNLNKHGQILELVEDGNNNAAETFAWSLPIVCGDPTDPSThfAGYDKAKVSPISCPDNVA 604
                 ********999999**********9988877888******************************************99977788899999********* PP

      DUF839 443 fdpaGrlwiatDgsgskdellgvtaeGkvynlarndGnn.vltsdaargevkrfltepegsEvtGvtfsPdgktlfvnvqhPg 524
                 fd++G+lwi+tDg++                l++ndG    ++++++rg++k+flt p g+E++G+ +++d++ +fv+vqhPg
  KIR64708.1 605 FDATGNLWISTDGNA----------------LGSNDGLFaTAVEGPERGHLKQFLTVPLGAETCGPFITGDNRSVFVAVQHPG 671
                 **************9................4567776677899**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.54
# Mc/sec: 3955.19
//
Query:       KIR64709.1  [L=232]
Description: anti-sigma factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-07   29.8   1.2    5.1e-07   29.8   1.2    2.3  2  zf-HC2    Putative zinc-finger
  ------ inclusion threshold ------
       0.95    9.7  11.7        1.5    9.1  11.8    1.4  1  RskA      Anti-sigma-K factor rskA


Domain annotation for each model (and alignments):
>> zf-HC2  Putative zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   1.2   5.7e-11   5.1e-07      10      35 .]      12      37 ..      11      37 .. 0.97
   2 ?   -2.5   0.1      0.75   6.8e+03      12      24 ..      49      61 ..      49      63 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 5.7e-11
                HHHCCT-SCCCHCCCHHHHCHTCHHC CS
      zf-HC2 10 aYlDGeLspeerarveaHLaeCpdCr 35
                aY+ G+L+p++ra+ e+HL +C++Cr
  KIR64709.1 12 AYVLGALAPADRAAYERHLGGCASCR 37
                9************************9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.75
                HCCT-SCCCHCCC CS
      zf-HC2 12 lDGeLspeerarv 24
                l G L+p+  +++
  KIR64709.1 49 LLGRLDPAGLEQF 61
                6799999988877 PP

>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  11.8   0.00016       1.5      26      85 ..      77     134 ..      63     228 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00016
                 ...................XXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXX CS
        RskA  26 aaaapppaaapaararr..laaaaAaalllvlgqlavasaaldplrqsaaqaeavvavlaap 85 
                 aa+++++++++aar+ r  l+a aAa+l++++g     +a+l+p  + ++ ++ ++a+ +  
  KIR64709.1  77 AARRRRRRERSAARR-RyaLTALAAAVLAVLAG---LGAATLRPPVEVTPTPTPQIALASMR 134
                 222222222222222.25655555555554444...22555555555555555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1546.06
//
Query:       KIR64710.1  [L=146]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-08   34.9   0.0    1.8e-08   34.6   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    5.3e-07   29.6   0.0    6.6e-07   29.3   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.7e-05   25.2   0.0    2.2e-05   24.8   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.7e-05   24.7   0.0    2.3e-05   24.2   0.0    1.3  1  FR47             FR47-like protein
  ------ inclusion threshold ------
      0.027   14.6   2.8      0.039   14.1   2.8    1.4  1  Acetyltransf_6   Acetyltransferase (GNAT) domain
       0.12   12.6   0.1       0.17   12.0   0.1    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
       0.18   11.5   0.2       0.28   10.9   0.2    1.2  1  PanZ             Acetyltransferase (GNAT) domain, PanZ


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   6.9e-12   1.8e-08      38     117 .]      57     129 ..      15     129 .. 0.74

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 6.9e-12
                     EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  38 aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                        dg+ ++ +++  +       a++++++V++++rg+GlG+ L   + +++   g+++ivla+++    a+++Y k GF
      KIR64710.1  57 RPGDGRQVAVARVVTDGA---TFAWLCDVYVDRAARGRGLGTWLAGGVRDHLATLGARRIVLATSD----AHGVYAKIGF 129
                     444566666666666666...89***************************************8854....58***99999 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.6e-10   6.6e-07      40     111 ..      61     134 ..      38     141 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2.6e-10
  Acetyltransf_10  40 gkivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavge 111
                      g+ v v+++ +dg     ++ ++Vd+++rg+G+g+ L   v++++ + g   +  v a++ a ++Y k+GF++v++
       KIR64710.1  61 GRQVAVARVvTDGAtfaWLCDVYVDRAARGRGLGTWLAGGVRDHLATLGA--RRIVLATSDAHGVYAKIGFTPVDP 134
                      6778888887777778889999**********************966654..67888999************9976 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   8.6e-09   2.2e-05      14      75 ..      63     130 ..      30     131 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 8.6e-09
                     EEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHH...HH.HTT.SEEEEEEEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  14 ivGfialslld...aeitrlaVdpeyrgkGiGraL...le.aae.kgiileqlelnaekaikfYeklGFe 75 
                     +v  ++++ ++   a+++ ++Vd ++rg+G+G+ L   ++ + +  g + +   l+++ a++ Y+k GF+
      KIR64710.1  63 QVAVARVVTDGatfAWLCDVYVDRAARGRGLGTWLaggVRdHLAtLGARRI--VLATSDAHGVYAKIGFT 130
                     4444444444455556666****************3333333224453322..3433469*********8 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   9.1e-09   2.3e-05      22      85 ..      77     137 ..      52     138 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 9.1e-09
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEEEEEEE CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfekieetew 85 
                   l  ++v+  +r+rGlg+ l+  +  ++a+ g   ++++    + +  +y k+Gf+  +  +w
  KIR64710.1  77 AWLCDVYVDRAARGRGLGTWLAGGVRDHLATLGARRIVLAT---SDAHGVYAKIGFTPVDPGRW 137
                 56889*****************************9887765...6799********98766666 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   2.8   1.5e-05     0.039      77     138 ..      56     120 ..      22     124 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
  Acetyltransf_6  77 rl..dgrpvAvalglrsgdrlyywlggy.dpelaklspgllllweliedaaeeGlrrfdlgggde 138
                     +   dgr vAva ++ +g ++ +++  y d+++++ ++g+ l   + +++a  G rr+ l ++d+
      KIR64710.1  56 YRpgDGRQVAVARVVTDGATFAWLCDVYvDRAARGRGLGTWLAGGVRDHLATLGARRIVLATSDA 120
                     44458********************9999****************************98887775 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   6.8e-05      0.17      10      57 ..      62     109 ..      53     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.8e-05
  Acetyltransf_CG  10 eevafleYevrkegvldfthTeVpeelrGkGiAkkLvkaalddareeg 57 
                       +va+++  +++     +  ++V+ + rG+G++  L+  + d+    g
       KIR64710.1  62 RQVAVARVVTDGATFAWLCDVYVDRAARGRGLGTWLAGGVRDHLATLG 109
                      556666665444445567789*****************9999976655 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00011      0.28      48      95 ..      62     110 ..      59     127 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
        PanZ  48 RlLgAvkvele.dkeaelsdlcVRevTRrRGVgsyLleearrqaPevks 95 
                 R  + ++v ++ ++ a+l d+ V +  R RG g  L   +r+++ ++ +
  KIR64710.1  62 RQVAVARVVTDgATFAWLCDVYVDRAARGRGLGTWLAGGVRDHLATLGA 110
                 6666666655515689********************9998888766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1090.11
//
Query:       KIR64711.1  [L=128]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-26   91.6  15.9      5e-26   91.4  15.9    1.0  1  Phage_holin_4_2  Mycobacterial 4 TMS phage holin, superfamily
  ------ inclusion threshold ------
        0.4   10.6   5.7       0.83    9.5   5.7    1.5  1  Peptidase_M48_N  CAAX prenyl protease N-terminal, five membra
        1.1    9.7  10.9       0.15   12.5   5.2    2.1  3  DUF2583          Protein of unknown function (DUF2583)


Domain annotation for each model (and alignments):
>> Phage_holin_4_2  Mycobacterial 4 TMS phage holin, superfamily IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4  15.9   8.4e-30     5e-26       3     105 .]       7     120 ..       5     120 .. 0.94

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 8.4e-30
  Phage_holin_4_2   3 fllrllvnalallvaalllpgvevas......fltallaalvlgllnalvkpilkllslpltiltlGlftlvinalmlllaaalvsg....fev 86 
                      +l+rl  +a+a+++a+ll+pg+++++      ++t+ll+a+++g++na+++pi+k + + +++ltlGl++lv+n+l++ll++++  +    f+v
       KIR64711.1   7 LLIRLGSTAVAFWLATLLIPGITLDTgsateaIVTLLLVAVIFGVVNAVLQPIVKTVGCGFYLLTLGLIALVVNGLLFLLTSWIAGEaglpFHV 100
                      89********************99666899999999************************************************9448899*** PP

  Phage_holin_4_2  87 dgfws.allgaliisvvsav 105
                      dgfw+ a+lgal+++vv+++
       KIR64711.1 101 DGFWPeAVLGALFVGVVTWL 120
                      ****87************96 PP

>> Peptidase_M48_N  CAAX prenyl protease N-terminal, five membrane helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.7   0.00014      0.83     123     177 ..      37      91 ..      34      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00014
  Peptidase_M48_N 123 dklkslllalviglpllaallwiiewggeyfylylwlfllvfslllmtiyPtlIa 177
                        + +lll++vi +++ a+l  i++ +g  fyl + ++++++   l++++  +Ia
       KIR64711.1  37 EAIVTLLLVAVIFGVVNAVLQPIVKTVGCGFYLLTLGLIALVVNGLLFLLTSWIA 91 
                      56899***********************************************997 PP

>> DUF2583  Protein of unknown function (DUF2583)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.27   1.6e+03      34      56 ..      26      48 ..       4      58 .. 0.52
   2 ?    3.2   3.3      0.02   1.2e+02      14      66 ..      40      93 ..      33      97 .. 0.76
   3 ?   12.5   5.2   2.6e-05      0.15       9      63 ..      65     125 ..      60     127 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.27
     DUF2583 34 pelelpellaeaallgifiGall 56
                p + l    a+ a++++++ a++
  KIR64711.1 26 PGITLDTGSATEAIVTLLLVAVI 48
                44444444444444444444443 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.02
     DUF2583 14 mglGlllmvaslaysvlnqlpe.lelpellaeaallgifiGallWlaGarvgGr 66
                ++l l++++ +++ +vl+ + + ++   +l +  l+++ +  ll+l  + ++G 
  KIR64711.1 40 VTLLLVAVIFGVVNAVLQPIVKtVGCGFYLLTLGLIALVVNGLLFLLTSWIAGE 93
                566778888888888887766526677778889999999999999888888775 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 2.6e-05
     DUF2583   9 lGnvlmglGlllm.vaslaysvlnqlp.....elelpellaeaallgifiGallWlaGarv 63 
                  G  l++lGl+++ v +l + +++ +       +++  +  ea l ++f+G + Wl Ga +
  KIR64711.1  65 CGFYLLTLGLIALvVNGLLFLLTSWIAgeaglPFHVDGFWPEAVLGALFVGVVTWLLGAVL 125
                 578899***9976157899999998853222258889999******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       926  (0.0516482); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1015.15
//
Query:       KIR64712.1  [L=610]
Description: hypothetical protein TK50_03545 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 4684.13
//
Query:       KIR64713.1  [L=97]
Description: hypothetical protein TK50_03555 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-15   55.4   4.9    5.8e-15   55.3   4.9    1.0  1  WXG100         Proteins of 100 residues with WXG
    0.00045   17.9   1.3    0.00051   17.7   1.3    1.0  1  DUF3584        Protein of unknown function (DUF3584)
      0.001   19.1   2.3     0.0013   18.8   2.3    1.1  1  PilJ           Type IV pili methyl-accepting chemotaxis trans
     0.0019   18.2   2.4     0.0072   16.4   0.6    2.0  2  MbeD_MobD      MbeD/MobD like
  ------ inclusion threshold ------
      0.014   15.7   0.2      0.017   15.5   0.2    1.2  1  OmpH           Outer membrane protein (OmpH-like)
      0.048   12.8   0.0      0.052   12.7   0.0    1.0  1  Taxilin        Myosin-like coiled-coil protein
      0.051   14.1   0.9        1.4    9.5   0.7    2.0  1  Syntaxin-6_N   Syntaxin 6, N-terminal
      0.053   13.9   0.2      0.061   13.7   0.2    1.1  1  YlqD           YlqD protein
      0.063   13.9   2.2      0.087   13.4   2.2    1.3  1  DUF883         Bacterial protein of unknown function (DUF883)
       0.23   11.9   4.5       0.38   11.3   4.5    1.3  1  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d
       0.63   10.7   9.4        2.9    8.6   9.4    1.8  1  KfrA_N         Plasmid replication region DNA-binding N-term


Domain annotation for each model (and alignments):
>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   4.9   3.6e-18   5.8e-15       4      85 ..       8      89 ..       5      90 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 3.6e-18
                SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  4 vdpeelrqaaarfqkqaeeledelqrlkaevdalqsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaanafedaD 85
                v++++l+qa a++q++ ++l ++l +l+++ + l ++W G+a++a+++ +++w+ a q+l+++L +i  a++ +a  + d++
  KIR64713.1  8 VNFAALQQAGADIQRALNTLDSQLGQLERDAAPLVASWDGEARQAYEQRQARWRSASQDLQAMLRDIKLAVDDSAHDYLDTE 89
                89******************************************************************************99 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   1.3   3.2e-07   0.00051     674     742 ..      12      80 ..       8      90 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.2e-07
     DUF3584 674 aiaerkqqaeeqlqkldaqlkqleeqqkaaleelkedlseerlekkakwqevvgeldeqlaelkkaiea 742
                 a++++ + ++++l++ld ql+qle++ + + +  + +++++  +++a w+  +++l++ l+ +k a++ 
  KIR64713.1  12 ALQQAGADIQRALNTLDSQLGQLERDAAPLVASWDGEARQAYEQRQARWRSASQDLQAMLRDIKLAVDD 80 
                 678888899*****************************************************9988765 PP

>> PilJ  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   2.3   7.8e-07    0.0013      39     102 ..      12      73 ..       4      85 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.8e-07
        PilJ  39 daaearaqlretiaqfdrtlaalrlgdpapgllvpae.avraqleaveqlWqelkkpaeaalaqq 102
                   ++a a+++++++++d +l +l+  d+ap l + ++ + r+++e+ +++W+ + + ++a l  +
  KIR64713.1  12 ALQQAGADIQRALNTLDSQLGQLE-RDAAP-LVASWDgEARQAYEQRQARWRSASQDLQAML-RD 73 
                 45999******************5.55574.5555566********************5444.43 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0       0.2   3.2e+02      30      56 ..      10      36 ..       8      45 .. 0.64
   2 !   16.4   0.6   4.4e-06    0.0072      16      37 ..      50      71 ..      48      78 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.2
   MbeD_MobD 30 faelqrmfeltqrenaaLseqvtgLsq 56
                fa lq+     qr +  L  q  +L +
  KIR64713.1 10 FAALQQAGADIQRALNTLDSQLGQLER 36
                566666666666666666666666654 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 4.4e-06
   MbeD_MobD 16 QqdYeqrlqeWesafaelqrmf 37
                 q+Yeqr+  W sa ++lq+m 
  KIR64713.1 50 RQAYEQRQARWRSASQDLQAML 71
                589*****************96 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.2     1e-05     0.017       6      75 ..       2      70 ..       1      95 [. 0.75

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1e-05
                -HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHH CS
        OmpH  6 dvqkileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqk 75
                d+  ++ ++ + ++a +++++  ++l+ +l ++e++   l++  + +a+++  e+++   +   q+lq+ 
  KIR64713.1  2 DHGVLVVNFAALQQAGADIQRALNTLDSQLGQLERDAAPLVASWDGEARQA-YEQRQARWRSASQDLQAM 70
                566678888999999999999999999999999999999999998777775.667777666666666653 PP

>> Taxilin  Myosin-like coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.2e-05     0.052      63     136 ..      22      95 ..       5      97 .] 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.2e-05
     Taxilin  63 skaalaksKLekLcRelqkqnkklkeeskqrareeeekrkelaekfqakLkdiqaqieekserneklreenael 136
                 +  +++ s L +L R+          e +q  ++ +++ +++++ +qa+L di+  ++++ ++   ++++n +l
  KIR64713.1  22 RALNTLDSQLGQLERDAAPLVASWDGEARQAYEQRQARWRSASQDLQAMLRDIKLAVDDSAHDYLDTEKRNVNL 95 
                 3445678899999999999999999************************************9999999999986 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.7   0.00088       1.4       9      59 ..      19      80 ..      15      84 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00088
  Syntaxin-6_N  9 eVqkslnkaeslyrrwerlledtsss.............tseeldetrteLrkalrsiewdled 59
                  ++q +ln++ s +++ er  + ++               ++   ++++++L++ lr+i+  ++d
    KIR64713.1 19 DIQRALNTLDSQLGQLER--DAAPLVaswdgearqayeqRQARWRSASQDLQAMLRDIKLAVDD 80
                  566666666666666654..11111123344444444447788888888888888888877766 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   3.7e-05     0.061      19      78 ..      14      73 ..       7      89 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.7e-05
        YlqD 19 eelqqqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkq 78
                +++ +++q+++++ld++l qLe +a  l+++   +  q+ e+ q++ +   +++++  ++
  KIR64713.1 14 QQAGADIQRALNTLDSQLGQLERDAAPLVASWDGEARQAYEQRQARWRSASQDLQAMLRD 73
                456678899999999999999999999999998877776666666666666655555444 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.2   5.3e-05     0.087       3      68 ..      27      92 ..      14      94 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.3e-05
      DUF883  3 leaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddy 68
                l + l +l  d++ l+ ++  ea++ +e+  +r +++ +++++ lrd + av ++a++  ++ ++ 
  KIR64713.1 27 LDSQLGQLERDAAPLVASWDGEARQAYEQRQARWRSASQDLQAMLRDIKLAVDDSAHDYLDTEKRN 92
                566778888999999999999999999999999999999999999999999999998887776665 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.5   0.00023      0.38       5      94 ..       6      92 ..       3      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00023
  T7SS_ESX_EspC  5 LsVdpdhlrelaakhdevaaeiasavaaaagasaavldshGpicaatndavaaaeaarraagealaaasteLadkLraAAaaYeatDeea 94
                   L V+ ++l++++a+ +++  +++s +    +++a ++    ++  + ++a ++ +a  r+a ++l+a+++++   ++ +A+ Y +t++++
     KIR64713.1  6 LVVNFAALQQAGADIQRALNTLDSQLGQLERDAAPLVA---SWDGEARQAYEQRQARWRSASQDLQAMLRDIKLAVDDSAHDYLDTEKRN 92
                   78999999999999999999999999888444444444...5******************************************999876 PP

>> KfrA_N  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   9.4    0.0018       2.9      56     110 ..      22      80 ..       8      84 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0018
      KfrA_N  56 a..pelPealaeal..laalwqaaleeaeeelaaaraelqaaraaleaeraeaearvee 110
                 +  ++l  +l ++   +a l ++   ea++++++++a++++a ++l+a++++++ +v+ 
  KIR64713.1  22 RalNTLDSQLGQLErdAAPLVASWDGEARQAYEQRQARWRSASQDLQAMLRDIKLAVDD 80 
                 23456666666555666899999999**************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       994  (0.0554409); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 769.17
//
Query:       KIR64714.1  [L=405]
Description: peptidase S8 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-43  147.9   1.4    1.4e-42  146.0   1.4    1.8  1  Peptidase_S8  Subtilase family


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0   1.4   7.8e-47   1.4e-42       1     284 [.      69     312 ..      69     324 .. 0.86

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 7.8e-47
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEE..... CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakil..... 92 
                   g gv+v+v+D+Gvd  hp+l                     ++a ++  ++  + ++++    HGt vA+i+aa  +    ++g+apga+il     
    KIR64714.1  69 GAGVTVGVIDSGVDRRHPQLAG------------------RVTAGADFLDPGGDGSGDC--AGHGTGVASIIAAEPRAGVAFQGLAPGARILpvrvs 145
                   789******************2..................3444444444444433333..23*****************************77776 PP

                   EEE-SSTTSB-HH...HHHHHHHHHHHHCT-SEEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCE CS
                   xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  93 svkvldtsggsmetg.teliraieeaaedkvdvinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvi 188
                   + +v+ ++++  + + ++ +rai++a+ +++dv+n+s+   t++p +       a+ +av  ++v+vv++aGN +       +g p  +p+ +++v+
    KIR64714.1 146 EQQVVEGRESGRTVSaADFARAIRWAVDHGADVVNLSVVLYTDNPAVRA-----AVGYAV-ARDVVVVAAAGNLH------DSGDPRPYPAAYDGVL 230
                   6667777888888888999999*****************7777777775.....899***.89************......7889************ PP

                   EEEEESTTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS-EE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 189 tvgayttegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAqdl 284
                   +vga+  +g  a+fS++Gp +      d+vapGg+++  ++ q+            +GTS A+P++a+ aAl++++ p+lt+e+v + +l t ++ 
    KIR64714.1 231 GVGAIGADGRRADFSQTGPYV------DLVAPGGEVLMAAPGQG--------HRRAEGTSYAAPFVAATAALVRQYRPELTAEQVTRQILATVDPA 312
                   *******************98......6*******999999999........6789**********************************998664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2603.90
//
Query:       KIR64715.1  [L=121]
Description: hypothetical protein TK50_03570 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.8   0.2       0.39   11.0   0.1    2.1  2  SH3_3     Bacterial SH3 domain


Domain annotation for each model (and alignments):
>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.29   5.2e+03      24      29 ..      43      48 ..      33      63 .. 0.56
   2 ?   11.0   0.1   2.2e-05      0.39      22      45 ..      66      86 ..      65     114 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.29
       SH3_3 24 kVevle 29
                 V vl 
  KIR64715.1 43 YVRVLP 48
                444432 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 2.2e-05
       SH3_3 22 GekVevleetgggeWykvrtddgt 45
                G++++vl e +g  W++v +++g 
  KIR64715.1 66 GQPFIVLAEHDG--WLRV-EYTGG 86
                99**********..****.55554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 897.01
//
Query:       KIR64716.1  [L=310]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-20   74.5   0.2    1.5e-20   74.0   0.2    1.3  1  Abhydrolase_1    alpha/beta hydrolase fold
    1.3e-17   65.2  20.9    1.8e-17   64.7  20.9    1.1  1  Abhydrolase_6    Alpha/beta hydrolase family
    2.9e-11   43.1   0.5      6e-11   42.1   0.5    1.7  1  Hydrolase_4      Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.014   14.0   0.0      0.021   13.5   0.0    1.2  1  AXE1             Acetyl xylan esterase (AXE1)
       0.11   11.4   0.0       0.18   10.7   0.0    1.3  1  Chlorophyllase2  Chlorophyllase enzyme
        0.2   10.7   0.0       0.32   10.0   0.0    1.3  1  Chlorophyllase   Chlorophyllase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.2   4.9e-24   1.5e-20       1     111 [.      41     143 ..      41     188 .. 0.88

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 4.9e-24
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeype 96 
                    p +++lhG+p+ ++ w+   + pa a++gf+ +++DlrG+g S+++p+     y   ++a+d+  +   lg ++ t+vG   GG+i++++a+ +p+
     KIR64716.1  41 PMVLLLHGFPEHWWAWHD--VLPAVADAGFRAVAVDLRGYGASDKPPRG----YDGYTLAADVAGLIRGLGERSATVVGTGAGGLIGWTAASFHPS 130
                    679***************..***************************85....66666************************************** PP

                    GEEEEEEESECSSCC CS
  Abhydrolase_1  97 rVkalvllgaidpaa 111
                     V++lv lga  p++
     KIR64716.1 131 LVRRLVVLGA--PHP 143
                    **********..333 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7  20.9   6.1e-21   1.8e-17       1     217 [.      43     300 ..      43     302 .. 0.65

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 6.1e-21
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH...CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC....EE. CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldled...ladlaalldelaagggpvvlvGHSlGGalalaaapla..lvvg. 90 
                    vlllHG++ + ++W ++ L a + ag++ +a+Dl+G+G sd pp +++    +ad+a l+++l+   + + +vG   GG++++ aa+    lv++ 
     KIR64716.1  43 VLLLHGFPEHWWAW-HDVLPAVADAGFRAVAVDLRGYGASDKPPRGYDGytlAADVAGLIRGLG--ERSATVVGTGAGGLIGWTAASFHpsLVRRl 135
                    89******999999.47888889999999***************99988655699999999994..7777**************666669866667 PP

                    .EEES-..----TTTS----TTHHHHHHTT-C..CCCH...CCH...........S-HSCCCCHHH...CCCCHCHCCCGHHHHCCHHCHTTCCHH CS
  Abhydrolase_6  91 .vlldppptalpagllaaalelllallallrl..lawl...sre...........plprlfladed...adaawrarlarlaallaglgllpaaaw 166
                     vl +p p+ l+a+ +a+++ +++a++++l +  +++    +r+             ++++++++d   + ++ r++ + ++a +++l+ +++a  
     KIR64716.1 136 vVLGAPHPLRLRAAIFADPRGQFAAATPALKFqlPRYEhvlTRDdaaaveemlrrWGGPRWVDGPDfdaYARRCREAMRIPQAAFCALEGYRWAFR 231
                    677777777777777777777777777755544422223332223444555444444448888888654366666666666666666665554422 PP

                    TT-TTGC................EEECTT-C.HHHHCHHCCCH..STTEEETCE...SSS-HHHHSHHHH CS
  Abhydrolase_6 167 adlpvpl................lvlggeDp.lvprllerlla..qagarlpvvlpgaGHlphleepdev 217
                      l+ +                  ++g+ D  ++pr+++  ++   a +++  +l + GH+ph e+ d v
     KIR64716.1 232 SVLRLHGyrfvrlmqkplvtptlQLHGALDVaSLPRTAQGSGRyvTAPYEW-RLLDDVGHFPHVEARDVV 300
                    222222232222222221223321225777787777777444444499999.************544554 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.5     2e-14     6e-11       6     116 ..      42     147 ..      39     295 .. 0.84

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 2e-14
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse.gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkva 102
                   v+l+HG+ eh ++ +++  a a++Gf  +a+D rG+G s+ + rg   +  ++ +D+a +++ + e+      +++G   GGli  +++  +p+ v+
   KIR64716.1  42 MVLLLHGFPEHWWAWHDVLPAVADAGFRAVAVDLRGYGASDkPPRG--YDGYTLAADVAGLIRGLGER----SATVVGTGAGGLIGWTAASFHPSLVR 133
                  699**************************************87777..4667899******9998855....5788********************** PP

  Hydrolase_4 103 glilsaPalkikak 116
                  +l++ ++   ++ +
   KIR64716.1 134 RLVVLGAPHPLRLR 147
                  99988876655544 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.9e-06     0.021      79     134 ..      36      92 ..      24     112 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.9e-06
                 SSSSEEEEEEEE-TT--GGGHHHHHH.HHHTT-EEEEEE-TTTS..SSB-SSCCSS- CS
        AXE1  79 keeklPavvefhGYegsrgeihdlln.yaaaGyavvvmdvRGqggesedkvgskgnk 134
                 ++++ P+v+  hG+ ++ + +hd l   a aG+  v++d RG g + + ++g  g +
  KIR64716.1  36 EAGTGPMVLLLHGFPEHWWAWHDVLPaVADAGFRAVAVDLRGYGASDKPPRGYDGYT 92 
                 46889********************715669************96665566655444 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.2e-05      0.18      13      54 ..      36      77 ..      32      90 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.2e-05
  Chlorophyllase2 13 eageYpvllflhGylllnslYsqlLkhiashgfivvapqlyk 54
                     eag+ p++l+lhG+      ++++L ++a  gf +va+ l  
       KIR64716.1 36 EAGTGPMVLLLHGFPEHWWAWHDVLPAVADAGFRAVAVDLRG 77
                     78999**********9999******************98765 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00011      0.32      41      99 ..      35      97 ..      32     107 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00011
  Chlorophyllase 41 aeaGtypvvlflhGtllsnkfyskllnhiashGfivvaPqlykllp....Psaqdeidsaaev 99
                    +eaGt p+vl+lhG+  +   + ++l  +a  Gf  va  l    +    P + d    aa+v
      KIR64716.1 35 VEAGTGPMVLLLHGFPEHWWAWHDVLPAVADAGFRAVAVDLRGYGAsdkpPRGYDGYTLAADV 97
                    699***********************************9885332112226666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2253.89
//
Query:       KIR64717.1  [L=810]
Description: protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.2e-170  569.1  20.7   1.8e-170  568.5  20.7    1.2  1  Peptidase_M6  Immune inhibitor A peptidase M6


Domain annotation for each model (and alignments):
>> Peptidase_M6  Immune inhibitor A peptidase M6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  568.5  20.7    1e-174  1.8e-170       3     648 ..     104     801 ..     102     807 .. 0.93

  Alignments for each domain:
  == domain 1  score: 568.5 bits;  conditional E-value: 1e-174
  Peptidase_M6   3 kavekGrertDkvlvlLvefpDlkd.....................lhneltkedt.....emyykdyeqehyqdllfgsegytgpdgenvkslkqy 73 
                   ++ve  rertDk++v+L ef+D +d                     lhne+ ++++     ++++ dy+ +++++l+fg        g++ +slkqy
    KIR64717.1 104 QYVELARERTDKIFVILAEFGDERDpaypdkdtnpniagpttfdgpLHNEIPQPNRavdnsTVWQADYSADYFRQLYFGT-------GQGDESLKQY 193
                   89999*************************************************99999999*****************9.......99999***** PP

  Peptidase_M6  74 yekqsggsysvdGevadWlkvpknaaryGsn.....ssgsdn.......kap...kaardlvkeala..........rteaekkidLaqyDqkDryD 145
                   ye qs+g+ysvdG v+dW+kv++naaryG       + ++dn       +a+   +++ dlv++a +          rt+a++k d++ yDq+Dr+D
    KIR64717.1 194 YEAQSSGRYSVDGMVTDWVKVKYNAARYGRSddpiaDDDTDNpandpavCADnicQNTWDLVRDAANqwvadqkakgRTDAQIKADMQSYDQWDRFD 290
                   *****************************753232234666622222222221113445666666657888************************** PP

  Peptidase_M6 146 lnGdGnlnePDGviDhlmiihagvgeeaGGGalGeDaiWshrsklavddavaeGtksnvk...qifdtkiaafdytiqPedgavGvfaheyGhDLGL 239
                   ++GdG++nePDG+iDh++i+h+g ++  G  ++GeDaiWshr+ ++  ++  +G+++      qi++t++++ dytiqPe+g+  vf hey hDLGL
    KIR64717.1 291 YDGDGDFNEPDGYIDHFQIVHSGGDQADGDPHQGEDAIWSHRWSAY--NTSRTGPANFPIggtQIGNTGVWIRDYTIQPENGGRSVFYHEYAHDLGL 385
                   **********************************************..4699999985545779********************************* PP

  Peptidase_M6 240 PDeyDtkytGkgepvgyWslmssGsWaGkiaGteptdfsaqakeflqkqlGGnWlnieeldlakleankgkkltldeasekskrpdvvkvtlpkksv 336
                   PD+y+    G+++  ++W+lm+    + k   + +++  ++  ++ + qlG  Wl+   +++ k++++k+ +l+ +e+++ + ++ vv +++ + + 
    KIR64717.1 386 PDDYNN-LNGGDNNNEHWTLMAQSRLSAKND-AGIGERGGDLGAWNKLQLG--WLD---YEVVKAGQKKTLELGPQEYNTAKPQAAVVVLPQREYTF 475
                   ****99.99*************988888887.99*****************..**9...8999999999999999********************** PP

  Peptidase_M6 337 eiikPaeGetayysgrGddlkntlsraldltkksaaklefkawyeieadyDfvevevsvdGaktlididgeidvspak..sdqsdknalsgkvd.aw 430
                   +   P eG+ +++sg+ ddl+ntl r++dlt+k++a l++k+ ++ie  yD++  e s+dG+ t+ + +g+++++p++  s++++ ++lsg+++ aw
    KIR64717.1 476 DYGAPFEGSKQFFSGNDDDLDNTLTRTIDLTGKTSAALSLKGRFDIESGYDYLFFEASTDGGSTWNALPGTVNGKPIPpvSSSDPTPGLSGSSNgAW 572
                   **************************************************************************9986336778899****99857* PP

  Peptidase_M6 431 idakydLsayaGkkveLkfdyltDgglamkGfavDdlavtvdGeqvfsDdaegatskftlnGftkkgg..tkekaqyyllelrnyvgvDkgLkt... 522
                    d + +L+a +Gk ++++f+y+tDgg+a  Gf  D+++vt+dG+++ sD ae+ t  ++++G+   +   t+  ++yy++ +r+yv++D+ Lkt   
    KIR64717.1 573 TDINIPLNALTGKSIQFRFHYITDGGVAEGGFFGDNITVTADGQTLSSDGAESGTGDWAAKGWSIVDEtyTRLFDNYYIAGHRSYVSYDQYLKTgpy 669
                   **************************************************************97554436999************************ PP

  Peptidase_M6 523 .......lkragelmsyepGllvWyvDesyaDnwvgkhPGeGflgvvDsdqeaLkskdGtvarnrmqvaDaafslrktaklkldkadvkkledssls 612
                          ++ ++++++y++Gll+ y++  +aDn + +hPGeG   ++Ds ++ + + +G++ r+r+qv+Da+fs++k+++++l+   ++++  +  +
    KIR64717.1 670 yfgygntRPDYVDHYAYQEGLLISYWNLRFADNDTFEHPGEGRNMIIDSRPQPIYNLTGNPWRARVQVYDAPFSTKKADSFTLHINGQAQYIRG-QA 765
                   *******************************************************************************************976.57 PP

  Peptidase_M6 613 asatfdddkdysdeqlpdaGvkvtdlglkikvlkqa 648
                   a++ fdd k+y  ++lp+ Gvkv+ +g+kikvl+q 
    KIR64717.1 766 AQPLFDDTKQYWFPELPNHGVKVPATGTKIKVLEQK 801
                   899******************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 5919.03
//
Query:       KIR64718.1  [L=654]
Description: acetyl-CoA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.6e-95  317.8   0.4      1e-94  317.5   0.4    1.1  1  AMP-binding    AMP-binding enzyme
    3.5e-27   95.2   3.7    7.7e-27   94.1   0.2    2.5  2  AMP-binding_C  AMP-binding enzyme C-terminal domain
    2.4e-20   72.2   2.4    6.5e-20   70.8   2.4    1.8  1  ACAS_N         Acetyl-coenzyme A synthetase N-terminus
  ------ inclusion threshold ------
      0.012   15.8   0.6      0.027   14.7   0.6    1.5  1  MlrC_C         MlrC C-terminus


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.5   0.4   2.3e-98     1e-94       6     422 ..      89     521 ..      83     522 .. 0.89

  Alignments for each domain:
  == domain 1  score: 317.5 bits;  conditional E-value: 2.3e-98
                  HHSTTSEEEEE...CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE. CS
  AMP-binding   6 aktpdkvalvd...sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli. 99 
                  a + d+va+++    g+ +t+TY++l++ ++++A++L+ lGv  gdrVai+lp+ pe  va+la++++Ga+++++  +++a+ l+  ++d+ akv+i 
   KIR64718.1  89 AGNGDRVAIHWegePGDTRTITYADLHRMTCQAANALTDLGVVAGDRVAIYLPMVPEAAVAMLACARIGATHSVVFGGFSADSLSNRIQDATAKVVIt 186
                  5677*****99***999********************************************************************************9 PP

                  ......ETCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.....-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHH CS
  AMP-binding 100 ......atvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekae.....kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlv 185
                        +  +  +  + ++ea ak ++v++v+v+ + + + ++ +k++   e   +      ++++++ +++++++i+YTSGTT +PKG+ ++++ ++
   KIR64718.1 187 adggyrR-GKPSAlKPTVDEAVAKCPSVEHVLVVRRTGEEVAWSAKDHWWHE---TvetasAEHTAQPFDAEHPLFILYTSGTTARPKGILHTTGGYL 280
                  9888742.23455588999999999*********988866665544443333...1334665667889**************************7777 PP

                  HHHHHHHHHHC.SCCTT.T-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHH CS
  AMP-binding 186 anvaslkletr.fklke.ddvvlsilplahifglilelllallsGatvvllpkdaa.ldpklllelieklkvtviagvPrvlealle.sgalkaakka 279
                  +++a  +     f+lk+ +dv+++++++ +++g+++ ++++l++G t v+++++++ +++++++e +++++v++++++P++++ +++  +++    + 
   KIR64718.1 281 TQAAYTA-H-AvFDLKPeTDVYWCTADIGWVTGHSYIVYGPLANGVTQVMYEGTPDtPHKGRFWEIVDRYQVSILYTAPTLIRTMMKwGDDIP---AG 373
                  7755532.3.347776679*************************************55599**************************998888...67 PP

                  CCGTT-SEEEEESS-EBHHHHHHHHHHHTC...EEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEET.. CS
  AMP-binding 280 kdlsslrlvllggeplspellrffralfge...evlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgp.. 372
                  +dlsslrl+ ++gep++pe++ ++r+++g+   ++++++++TEt+++++ + +   ++k+gs+ +plpgv + +vD++ g+ vp+g  G l++r p  
   KIR64718.1 374 HDLSSLRLLGSVGEPINPEAWMWYRQHVGRgelPIVDTWWQTETGAIMISPLPGVTETKPGSAMTPLPGVVADVVDDQ-GQSVPNGGGGYLVLREPwp 470
                  8***********************************************77555667789******************9.****************977 PP

                  TS-SEBTT-HHHHHHHEEET.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 373 gvmkgYlkkpeataeafdse.grwlrTGDlgrldedGyleivgRkkdlikl 422
                  ++ +  ++++++  e+++s  ++++  GD ++ d+dG+++++gR +d++ +
   KIR64718.1 471 SMLRTIWGDDDRFVETYWSRfEGMYFAGDGAKKDDDGHIWLLGRVDDVMLV 521
                  8*****************84668************************9966 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.4      0.14   6.5e+02       2      20 ..     203     221 ..     202     228 .. 0.81
   2 !   94.1   0.2   1.7e-30   7.7e-27       1      76 []     530     612 ..     530     612 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.14
                    HHHHHHSSTTEEEEEEE-- CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGv 20 
                    v +a++++p V+ + Vv  
     KIR64718.1 203 VDEAVAKCPSVEHVLVVRR 221
                    789*************944 PP

  == domain 2  score: 94.1 bits;  conditional E-value: 1.7e-30
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---...---......HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg...sea......leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    evEsalvshp VaeaaVvG +d+++G+a+vaf +++ g   + a      l ++L+ hv+++lgp+a+p+++ +v+elpktrsGK
     KIR64718.1 530 EVESALVSHPSVAEAAVVGATDPTTGQAIVAFAIPR-GsvdT-AgeageqLIADLRNHVARTLGPIAKPRQIMLVPELPKTRSGK 612
                    8**********************************7.54431.2445777**********************************9 PP

>> ACAS_N  Acetyl-coenzyme A synthetase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   2.4   1.5e-23   6.5e-20       3      55 .]      30      82 ..      28      82 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 1.5e-23
                HHHHHHHH-HHHHHHHHHCCS--SB--S-SECSTTTCT-EESTT-EE-HHHHH CS
      ACAS_N  3 elykeSiedpeaFWaeqakeldWekpfdkvldgskgpfikWFeGGklNicyNc 55
                + y+e+ +d  aFW++qa +l W +++++vld+s++pf+kWF+GG+lN++yNc
  KIR64718.1 30 DAYAEAAADRLAFWERQAGRLAWAQQWEQVLDWSNPPFAKWFVGGRLNVAYNC 82
                78*************************************************** PP

>> MlrC_C  MlrC C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.6     6e-06     0.027      29     108 ..     135     212 ..     118     230 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6e-06
                 T--EEEEEE-HHHHHHHHHH-TT-EEEEEES-SS-TTS.--E.EEEEEEEEEEEEEEE--SSTTTT-EEEEEEEEEEEETT CS
      MlrC_C  29 kkvlvasivDpeavaaaaaagvGatveltlGgkvdalhgepv.eltgtVealsdgrytaegpmltgqevdlgrtavlrvgg 108
                 + +++ ++v ++ava++a a +Gat ++ +Gg + ++ ++ + ++t++V+  +dg y+  +p   + +    ++av ++ +
  KIR64718.1 135 RVAIYLPMVPEAAVAMLACARIGATHSVVFGGFSADSLSNRIqDATAKVVITADGGYRRGKPSALKPT---VDEAVAKCPS 212
                 5789999*************************887776666669**************9444433322...2334555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 4309.07
//
Query:       KIR64719.1  [L=248]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0081   16.0   0.3     0.0081   16.0   0.3    2.7  3  VbhA      Antitoxin VbhA
  ------ inclusion threshold ------
      0.067   12.6   0.0       0.11   12.0   0.0    1.3  1  Aldolase  KDPG and KHG aldolase


Domain annotation for each model (and alignments):
>> VbhA  Antitoxin VbhA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2       0.4   3.5e+03      45      47 .]      23      25 ..      14      32 .. 0.57
   2 !   16.0   0.3     9e-07    0.0081       6      26 ..      49      69 ..      47      71 .. 0.91
   3 ?   -2.1   0.0      0.41   3.6e+03       5      17 ..     123     135 ..     121     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.4
        VbhA 45 raR 47
                r R
  KIR64719.1 23 RDR 25
                444 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 9e-07
        VbhA  6 rqAlAsnelEGlepsaetvad 26
                r+A+As+ lEG+ +++e v++
  KIR64719.1 49 RSAVASAALEGYAHDRESVRA 69
                89***************9986 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.41
        VbhA   5 VrqAlAsnelEGl 17 
                 V++ + +++l+Gl
  KIR64719.1 123 VADPVVAARLDGL 135
                 78888899***98 PP

>> Aldolase  KDPG and KHG aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.2e-05      0.11      27      81 ..      33      86 ..       8      99 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.2e-05
                HHHH.HTT--EEEEETTSTTHHHHHHHHHHH-TTSEEEEES--SHHHHHHHHHCT- CS
    Aldolase 27 eaLv.agGlrvlevtlrteaaldairvlrkerpdllvgaGtvlnaeqlaeakeaGa 81
                 aL  +gG  ++ev lr+  a+ a++  +++r+   v aGtv ++   ++ + aGa
  KIR64719.1 33 RALRrHGGQVAAEVSLRSAVASAALEGYAHDRES--VRAGTVTDPVSQGALRVAGA 86
                455514667789**************99999986..79******999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1829.86
//
Query:       KIR64720.1  [L=267]
Description: inhibition of morphological differentiation protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-32  112.5   0.5    4.1e-32  112.1   0.5    1.2  1  HAD          haloacid dehalogenase-like hydrolase
    0.00098   19.5   0.1     0.0015   18.9   0.1    1.5  1  Hydrolase    haloacid dehalogenase-like hydrolase
     0.0011   18.8   0.0     0.0095   15.7   0.0    2.1  2  Hydrolase_3  haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.5   6.9e-36   4.1e-32       1     188 []       6     191 ..       6     191 .. 0.89

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 6.9e-36
         HAD   1 alfDfDgTLldgdslelllrfllrrgaprlwralreklllalfrellrldraglaelleallagls.eelaaelerfvaevirpk...lldpgalella 95 
                 a+fD+D+T ++++s+ ++ r ++r g   +++ ++ ++ + +fr ++++  +++++  + +la+l  +   ++++++vae  ++    + + +a +l++
  KIR64720.1   6 AFFDLDKTVIAKSSALAFGRPFYRDGLITRRDVVKSAYAQLMFRLGGTD--EQTMAKTRDYLAALCkGWQVEQVRQIVAETLHELinpYVYAEAAALIE 102
                 8****************************99999999999999998888..77777777777777779999999999977777763333557******* PP

         HAD  96 ahraaGdrvvvvSgglrplvepllaelgadevlatelevdd.rltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpllr 188
                 +h+aaG  vv+vS++ +++v+p+ ++lg+ +v+at+++v d r++ge    +   +g  kv a+ e   a+ +g dl++++ay+Ds+sD pll+
  KIR64720.1 103 EHQAAGRDVVLVSASGEEMVRPIGELLGVTDVIATRMAVADgRYSGE---VEFYAAGPSKVEAVSE--LARLRGYDLADSYAYSDSMSDRPLLE 191
                 ***********************************************...8888899999999999..77788888899*************96 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   2.5e-07    0.0015     116     207 ..      91     191 ..       5     194 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.5e-07
                 THHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.......GGGE.SEEEEHHCES.STTTSHHHHHHHHHHHTST.GGGEEEEESSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
   Hydrolase 116 plkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.......ddyf.daviasdiet.vakpspegkvaaireLqgk.peevamVGDgvnDaa 204
                 p +v+ eaa ++++ +aag +vvl++ + +e+++ + + lG       + ++ d+ +++++e   a+ps+   v  + +L+g   ++  +  D++ D +
  KIR64720.1  91 P-YVYAEAAALIEEHQAAGRDVVLVSASGEEMVRPIGELLGvtdviatRMAVaDGRYSGEVEFyAAGPSKVEAVSELARLRGYdLADSYAYSDSMSDRP 188
                 3.7**************************************9877655333335555555555888887776666666666443777777777777776 PP

                 HHH CS
                 xxx RF
   Hydrolase 205 ala 207
                  l+
  KIR64720.1 189 LLE 191
                 665 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.097   5.8e+02      19      58 ..      96     135 ..      84     146 .. 0.85
   2 !   15.7   0.0   1.6e-06    0.0095     179     226 ..     150     197 ..     143     205 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.097
                  HHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEE CS
  Hydrolase_3  19 ktkeaikklkekgikvviATGRslravlpvleelgldlpv 58 
                  ++++ i++ +++g  vv+ ++   ++v+p+ e lg++  +
   KIR64720.1  96 EAAALIEEHQAAGRDVVLVSASGEEMVRPIGELLGVTDVI 135
                  6678899999******************999999988444 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.6e-06
                  EEEEETT-SHHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEE CS
  Hydrolase_3 179 leimpkgvsKgtalkklakelnisleeviafGDgeNDieMLeaaglgv 226
                  +e++++g sK +a+++la   +++l++ +a  D++ D ++Le +g+  
   KIR64720.1 150 VEFYAAGPSKVEAVSELARLRGYDLADSYAYSDSMSDRPLLECVGHPS 197
                  7999****************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 1802.42
//
Query:       KIR64721.1  [L=124]
Description: NUDIX hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-16   59.0   0.0    5.9e-16   58.7   0.0    1.1  1  NUDIX     NUDIX domain
     0.0042   17.1   0.0     0.0062   16.5   0.0    1.4  1  NUDIX_4   NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   6.6e-20   5.9e-16      17     117 ..       1     100 [.       1     111 [. 0.78

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 6.6e-20
                 EEEEEESSSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEE...EEEEEEEEE.EEECSGCSSTSTTTEEEEEEE CS
       NUDIX  17 vLlvrrskkpfpg.WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygd...eheilyvfl.eevegelepndenevsevrwv 110
                 +Ll++r+    +g W+lPgG+ e gE+++ AA+RE++EEtG+++e + ++g++ + a + ++  d   +  ++++++  ++ g+l+p  ++e s++rwv
  KIR64721.1   1 MLLIQRT---DNGlWSLPGGGQEIGESVAGAAVREAQEETGVRVEVTGMVGVYSDPAHVIAYS-DgqvRQQFSLCLRaVPLGGTLTP--SDESSDARWV 93 
                 6899999...7779***************************9888888888444444443333.25788888899996666666666..59999***** PP

                 EHHHHHH CS
       NUDIX 111 pleellk 117
                   ++l+ 
  KIR64721.1  94 ARDDLVT 100
                 ****933 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.9e-07    0.0062      12      98 ..       2     101 ..       1     112 [. 0.62

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.9e-07
                 EEEE--TTSSSTT-EE-SEEE.-TTS-.HHHHHH..HHHHS-EEE.......EEEEEEEEEEETTEEEEEEEEEE........EEE.S..---....EE CS
     NUDIX_4  12 llekRpekgllggLwefPgge.eegee.leeala..reelgieve.......elepgtvkHvftHfrltltvylv........rveegeeapa....el 87 
                 ll +R+++    gLw++Pgg  e ge+ + +a+   +ee+g+ ve         +p   +  +++ +++ ++ l+        +      +p+    + 
  KIR64721.1   2 LLIQRTDN----GLWSLPGGGqEIGESvAGAAVReaQEETGVRVEvtgmvgvYSDPAH-VIAYSDGQVRQQFSLClravplggT-----LTPSdessDA 90 
                 67778886....9*****7664889884444443668899985554455442123333.3456777777666656774444332.....3333555699 PP

                 EEEEGGGGGGS CS
     NUDIX_4  88 rwvtpeeleey 98 
                 rwv +++l ++
  KIR64721.1  91 RWVARDDLVTL 101
                 9*999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.43
# Mc/sec: 860.71
//
Query:       KIR64722.1  [L=214]
Description: deaminase/reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-10   41.3   0.0    1.9e-10   40.9   0.0    1.3  1  RibD_C    RibD C-terminal domain


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   1.1e-14   1.9e-10      35     181 ..      65     190 ..       8     205 .. 0.76

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 1.1e-14
                 HHHHHTSSEEEEEH...HHHHHHT--S.S--SSCHSCHHHTT.GSS-EEEEEETTS-S-TTSHHHHSSS-EEEEESSCSCHHHHHHCCESE-HHHHHHH CS
      RibD_C  35 helraeadailvGr...gtvladnpsl.tvrwvkkreaeadaearqpvrvVvdstlrvpldakvltddaptlvatteeadkekveklkvrvdlkellee 129
                  ++ ++ +a ++Gr   g  ++ +  + +  w++++++       +++ +V+++ +r  ++ ++ +++    ++                  ++e+le+
  KIR64722.1  65 RDYDHNIGAEIMGRnkfGPQRGPWENHdWQGWWGDNPP------FHTPVFVLTHYER--PSFTLSDTT--FHFL---------------DASPAEALER 138
                 55666777888888777666766654438899999999......99*********99..555533333..2222...............344******* PP

                 HHHT.T--EEEEEETHHHHHHHHHTTT-SEEEEEEESCE--TTSBCSSSSST- CS
      RibD_C 130 Lker.girsllveGGatLagsllraglvDelrlyiaPkllGgagktlfdgegf 181
                  +++ ++r++ + GG  +++++++a+lvD +++ +aP+ lG  g++l d  + 
  KIR64722.1 139 ARQAaDGRDVRLGGGVATIREFIEADLVDTMHIAVAPVDLGR-GERLWDSPDD 190
                 ****9*************************************.***9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       173  (0.00964917); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1528.09
//
Query:       KIR64723.1  [L=217]
Description: hypothetical protein TK50_03625 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1687.17
//
Query:       KIR64724.1  [L=1087]
Description: ATPase AAA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-09   36.6   0.0    1.5e-08   35.0   0.0    1.7  2  DUF87            Helicase HerA, central domain
    8.6e-06   26.2   4.8    0.00032   21.1   1.5    3.6  3  AAA_16           AAA ATPase domain
    9.1e-06   26.0   0.1       0.61   10.4   0.0    4.2  4  AAA_22           AAA domain
     0.0001   22.1   0.0       0.19   11.4   0.0    2.6  2  AAA_30           AAA domain
     0.0002   20.4   1.5     0.0037   16.2   0.0    2.5  3  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
    0.00074   18.8   0.1       0.07   12.4   0.1    2.5  2  Zeta_toxin       Zeta toxin
     0.0018   18.0   0.0     0.0064   16.2   0.0    1.8  2  Zot              Zonular occludens toxin (Zot)
     0.0032   17.4   0.2        1.3    8.9   0.0    2.5  2  NACHT            NACHT domain
     0.0048   15.5   0.0      0.037   12.6   0.0    2.3  3  DUF853           Bacterial protein of unknown function (DUF85
     0.0049   17.2   0.1       0.16   12.3   0.0    2.5  2  AAA_19           AAA domain
  ------ inclusion threshold ------
      0.023   13.5   0.0       0.11   11.3   0.0    1.8  2  T4SS-DNA_transf  Type IV secretory system Conjugative DNA tra
       0.13   11.1   0.0       0.26   10.2   0.0    1.4  1  AAA_10           AAA-like domain
       0.16   11.9   0.1        2.1    8.2   0.0    2.2  2  MobB             Molybdopterin guanine dinucleotide synthesis
       0.17   11.5   0.3        7.8    6.0   0.0    2.2  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
       0.27   11.1   0.0         25    4.7   0.0    2.2  2  ATPase_2         ATPase domain predominantly from Archaea


Domain annotation for each model (and alignments):
>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.6   5.5e+03      30      43 ..      64      77 ..      62      84 .. 0.80
   2 !   35.0   0.0   1.3e-11   1.5e-08       3      68 ..     675     737 ..     673     787 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.6
       DUF87 30 gsTGsGKSntvavL 43
                g+ GsGK+++ +v 
  KIR64724.1 64 GQRGSGKTHLLGVV 77
                677******99986 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 1.3e-11
       DUF87   3 iGrllsgsevpvyldlnklvtrHlAilgsTGsGKSntvavLleellekkgatililDpHGEYgkal 68 
                 +G+   +++ pv+l l +++++H+ i++ +GsGK+ +++ ++ee +   g++ ++lDp+++ +++ 
  KIR64724.1 675 VGYG-YDDGAPVPLAL-EALRKHTTIFAGSGSGKTVLIRRIVEECA-LAGVSAIVLDPNNDLARLG 737
                 6666.57889******.555**************************.*************977776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   1.5   2.7e-07   0.00032      21      63 ..      54      96 ..      43     252 .. 0.72
   2 ?    3.3   0.0     0.078        93      33      49 ..     702     718 ..     688     736 .. 0.78
   3 ?   -1.7   0.0       2.8   3.4e+03     107     151 ..     914     960 ..     815     982 .. 0.63

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.7e-07
      AAA_16 21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                 g+p  +++ G++G+GK+ l+  ++++++++gg+f+     + 
  KIR64724.1 54 HGSPLGLVVQGQRGSGKTHLLGVVRQRVQEAGGYFFLVGLLDA 96
                68999***************************99954444444 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.078
      AAA_16  33 sGvGKsslvrellrale 49 
                 sG+GK+ l+r++ ++  
  KIR64724.1 702 SGSGKTVLIRRIVEECA 718
                 8*********9987655 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.8
      AAA_16 107 avpelagaeasrllellkrllallsrderp..lvlvlDdlqwadeas 151
                 ++++++ +  ++l  +l + +++ + ++rp   +lv+D++q + ++ 
  KIR64724.1 914 PSDDVRQSFVNQLQMALFAWIKRNPAGDRPllGLLVMDEAQTFAPSG 960
                 33333333336666666666666667777854478889888776654 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0038       4.6       8      86 ..      60     134 ..      55     147 .. 0.66
   2 ?   -1.9   0.0       3.2   3.8e+03      57     104 ..     190     249 ..     166     261 .. 0.69
   3 !   10.4   0.0   0.00051      0.61       5      28 ..     693     716 ..     690     731 .. 0.90
   4 ?    2.1   0.0      0.18   2.1e+02      92     106 ..     945     962 ..     905     995 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0038
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka.erlsseellealeqal 86 
                 lvv G+ G+GKT+ll  ++++ +e+      +  ++   l +++ ++++l +ll  l ++  + ++ +++ ll++l   +
  KIR64724.1  60 LVVQGQRGSGKTHLLGVVRQRVQEAG-----GYFFLVGLLDAGSFWDNVLAALLDGLARPVPGsPETQLKLLLRRLSALV 134
                 7899***********99999987541.....3333333333344677778888888887777755555555556665555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.2
      AAA_22  57 lrellralglelka.............erlsseellealeqalraravielliiDEaqhlr 104
                  r+l++++ l++++             ++   +++++ l   l  ++  +++ iD ++ l+
  KIR64724.1 190 HRDLAENYFLSGEEvvageraawgmrrAPRPAQQIVQDLSWLLALTGP-SVVAIDQVDTLI 249
                 455555555555556666777777776777777788888888888888.999999999984 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00051
      AAA_22   5 agilvvtGesGtGKTtllrrlleq 28 
                 ++++++++ sG+GKT+l+rr++e+
  KIR64724.1 693 RKHTTIFAGSGSGKTVLIRRIVEE 716
                 6899****************9986 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.18
      AAA_22  92 ielliiDEaqhlr.s..e 106
                  +ll+ DEaq +  s  +
  KIR64724.1 945 LGLLVMDEAQTFApSgaM 962
                 589********9753332 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00016      0.19      21      48 ..      60      87 ..      47      98 .. 0.83
   2 !    7.7   0.0    0.0023       2.7      19      60 ..     694     735 ..     685     745 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
      AAA_30 21 avltGpAGtGKttalkalreaweaaggr 48
                 v++G  G+GKt++l+++r+ +++agg 
  KIR64724.1 60 LVVQGQRGSGKTHLLGVVRQRVQEAGGY 87
                689*****************99999744 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0023
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrviglAptgkaAk 60 
                 + +++ ++ G+GKt +++ ++e  + ag + i+l p++  A+
  KIR64724.1 694 KHTTIFAGSGSGKTVLIRRIVEECALAGVSAIVLDPNNDLAR 735
                 55788899*****************99999999999888764 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       2.7   3.2e+03      19      33 ..      61      75 ..      59      85 .. 0.72
   2 !   16.2   0.0   3.1e-06    0.0037       6      54 ..     684     732 ..     681     736 .. 0.93
   3 ?    2.6   0.1     0.043        51     264     310 ..     972    1018 ..     961    1026 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.7
  TrwB_AAD_bind 19 livGttGsGKtqale 33
                   ++ G  GsGKt  l 
     KIR64724.1 61 VVQGQRGSGKTHLLG 75
                   57899******8664 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 3.1e-06
  TrwB_AAD_bind   6 gvplpkeretqhilivGttGsGKtqalekllrairargdraivlDltGa 54 
                     vpl  e+ ++h+ i+ + GsGKt+ ++ ++++    g  aivlD++ +
     KIR64724.1 684 PVPLALEALRKHTTIFAGSGSGKTVLIRRIVEECALAGVSAIVLDPNND 732
                    589999999************************************9765 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.043
  TrwB_AAD_bind  264 llaegRkfGgavvlglqsiaqlrevYGedaaqsilslvntklilrvs 310 
                     l+a++Rk+G  +v + q+ + l++    +aa  + +l+n+ + ++++
     KIR64724.1  972 LAAQARKYGLGLVFATQAPKGLHNRIPGNAATQLYGLMNSPIQIEAA 1018
                     6799*******************9999999999****9998877655 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   5.9e-05      0.07      11      46 ..      52      87 ..      44      92 .. 0.84
   2 ?    3.7   0.0     0.027        32      22      51 ..     700     729 ..     690     735 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.9e-05
  Zeta_toxin 11 psqerPklillgGqpGAGKselaellkdelerqgnv 46
                 +  +P  +++ Gq G+GK++l+  ++++++++g++
  KIR64724.1 52 NPHGSPLGLVVQGQRGSGKTHLLGVVRQRVQEAGGY 87
                466899999********************9988876 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.027
  Zeta_toxin  22 gGqpGAGKselaellkdele.rqgnvvrldp 51 
                 +G +G+GK+ l++ + +e + ++ ++++ldp
  KIR64724.1 700 AG-SGSGKTVLIRRIVEECAlAGVSAIVLDP 729
                 44.6**************9988889999987 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         2   2.4e+03       5      21 ..      62      80 ..      60      85 .. 0.69
   2 !   16.2   0.0   5.4e-06    0.0064      82     153 ..     946    1016 ..     916    1039 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2
         Zot  5 vtGapGsgKt..sgavkkd 21
                v+G+ GsgKt  +g+v ++
  KIR64724.1 62 VQGQRGSGKThlLGVVRQR 80
                78********333555555 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 5.4e-06
         Zot   82 allviDEcqeifpvrakegrkdpevinaftehRhlgwDivlltqdiskihkevr.alaekavklkrkaaigik 153 
                  +llv+DE+q++ p  a   +  +  +   +++R++g  +v+ tq +  +h+ +  ++a + + l +   i+i+
  KIR64724.1  946 GLLVMDEAQTFAPSGAM-TACTQSTLALAAQARKYGLGLVFATQAPKGLHNRIPgNAATQLYGLMNS-PIQIE 1016
                  79********9999999.577888889999**********************984555555555555.46665 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0011       1.3       3      23 ..      60      80 ..      59     122 .. 0.89
   2 !    6.0   0.0    0.0086        10       9      25 ..     702     718 ..     695     724 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
                EEEEC-TTTCHHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklala 23
                +++qG+ GsGKT+Ll  + + 
  KIR64724.1 60 LVVQGQRGSGKTHLLGVVRQR 80
                689***********9766655 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0086
                 TTTCHHHHHHHHHHHHC CS
       NACHT   9 aGsGKTtLlqklalawa 25 
                 +GsGKT+L+++++++ a
  KIR64724.1 702 SGSGKTVLIRRIVEECA 718
                 7************9876 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.52   6.2e+02      25      54 ..      61      90 ..      45      95 .. 0.79
   2 !   12.6   0.0   3.1e-05     0.037      10      65 ..     682     737 ..     677     756 .. 0.92
   3 ?   -2.8   0.0       1.4   1.7e+03     288     308 ..     976     996 ..     938    1004 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.52
      DUF853 25 liaGatGtGktvtLqvlaeslseaGvpvfl 54
                ++ G  G Gkt  L v+ + + eaG   fl
  KIR64724.1 61 VVQGQRGSGKTHLLGVVRQRVQEAGGYFFL 90
                578******************999987776 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.1e-05
      DUF853  10 eqelalalklanrhGliaGatGtGktvtLqvlaeslseaGvpvfladvkGdLsgia 65 
                  +++ lal+   +h  i    G Gktv ++ + e+ + aGv+ ++ d   dL+ + 
  KIR64724.1 682 GAPVPLALEALRKHTTIFAGSGSGKTVLIRRIVEECALAGVSAIVLDPNNDLARLG 737
                 67888999999*******9********************************99876 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.4
      DUF853 288 irskGvGvyfvtqnPldlPdt 308
                  r  G G+ f tq P  l + 
  KIR64724.1 976 ARKYGLGLVFATQAPKGLHNR 996
                 58889**********988765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.22   2.6e+02      13      37 ..      60      84 ..      47      89 .. 0.73
   2 !   12.3   0.0   0.00013      0.16       8      37 ..     691     720 ..     687     730 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.22
      AAA_19 13 llvtaGpGtGKTrvlkhivallvel 37
                l+v +  G+GKT++l  + + ++e+
  KIR64724.1 60 LVVQGQRGSGKTHLLGVVRQRVQEA 84
                5677889******998776666655 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00013
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallvel 37 
                 + +k+  + aG G+GKT +++ iv+++  +
  KIR64724.1 691 ALRKHTTIFAGSGSGKTVLIRRIVEECALA 720
                 5678899*****************988655 PP

>> T4SS-DNA_transf  Type IV secretory system Conjugative DNA transfer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.2e-05      0.11      45      92 ..     694     743 ..     662     746 .. 0.75
   2 ?   -0.7   0.0      0.38   4.6e+02     292     356 ..     934    1004 ..     907    1020 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.2e-05
  T4SS-DNA_transf  45 ehvlvvAptrsgKgvgv..viPnllkwkqsiVvlDpkgElaeltskiRkk 92 
                      +h  ++A+++sgK+v +  ++      + s++vlDp ++la l  ++ ++
       KIR64724.1 694 KHTTIFAGSGSGKTVLIrrIVEECALAGVSAIVLDPNNDLARLGEEWPEQ 743
                      8*************987545555555666************999888766 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.38
  T4SS-DNA_transf  292 krklpnkderpkevlflLDE...fpslGkleileeal....atiagYgirltlIiQsisqlketYgkegaks 356 
                        +++p +d+     l+ +DE   f+  G++ +  ++     a  ++Yg+ l++  Q  + l+++  ++ a++
       KIR64724.1  934 IKRNPAGDRP-LLGLLVMDEaqtFAPSGAMTACTQSTlalaAQARKYGLGLVFATQAPKGLHNRIPGNAATQ 1004
                       4555555544.4568889996667777999988765322225678***********9999998777766665 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00022      0.26      23      69 ..     695     741 ..     690     764 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00022
      AAA_10  23 asliiGdlGnGKSvlakllvlyisllggkaliiDpkkerekfketlp 69 
                 ++ i  + G GK vl++ +v  ++l+g  a+++Dp ++  +  e+ p
  KIR64724.1 695 HTTIFAGSGSGKTVLIRRIVEECALAGVSAIVLDPNNDLARLGEEWP 741
                 66677778****************************99776666555 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.36   4.3e+02       3      19 ..      61      77 ..      59      87 .. 0.77
   2 ?    8.2   0.0    0.0018       2.1       4      29 ..     698     723 ..     696     730 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.36
        MobB  3 givgksgsGKTtLlekl 19
                 + g+ gsGKT Ll  +
  KIR64724.1 61 VVQGQRGSGKTHLLGVV 77
                57799********9655 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0018
        MobB   4 ivgksgsGKTtLleklipelkarglr 29 
                 i + sgsGKT L+ ++++e +  g++
  KIR64724.1 698 IFAGSGSGKTVLIRRIVEECALAGVS 723
                 7889**************99887765 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.047        56       3      19 ..      60      76 ..      58      85 .. 0.82
   2 ?    6.0   0.0    0.0066       7.8       7      32 ..     701     725 ..     695     737 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.047
                EEEEESTTCCHHHHHHH CS
        cobW  3 tvltGflGsGKTtLlnh 19
                +v+ G  GsGKT Ll  
  KIR64724.1 60 LVVQGQRGSGKTHLLGV 76
                5899**********965 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0066
                 ESTTCCHHHHHHHHHCT--SS-EEEE CS
        cobW   7 GflGsGKTtLlnhllenraglklavi 32 
                 G  GsGKT L+++++e+ a   +  i
  KIR64724.1 701 G-SGSGKTVLIRRIVEECALAGVSAI 725
                 4.4************66555555444 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.033        39      23      47 ..      60      84 ..      52      93 .. 0.81
   2 ?    4.7   0.0     0.021        25      25      44 ..     698     717 ..     689     731 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.033
    ATPase_2 23 yfiYGpegsGKtaLlkeiienledk 47
                +++ G +gsGKt Ll  + ++ ++ 
  KIR64724.1 60 LVVQGQRGSGKTHLLGVVRQRVQEA 84
                6899**********98877776655 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.021
    ATPase_2  25 iYGpegsGKtaLlkeiienl 44 
                 i+   gsGKt L+++i+e+ 
  KIR64724.1 698 IFAGSGSGKTVLIRRIVEEC 717
                 666689***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1087 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.72u 0.23s 00:00:00.95 Elapsed: 00:00:00.40
# Mc/sec: 8227.05
//
Query:       KIR64725.1  [L=97]
Description: hypothetical protein TK50_03635 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 704.79
//
Query:       KIR64726.1  [L=207]
Description: RNA polymerase sigma factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-10   38.5   0.0    1.2e-09   37.7   0.0    1.5  1  Sigma70_r4_2     Sigma-70, region 4
    2.9e-08   33.1   0.0    6.8e-08   31.9   0.0    1.6  2  GerE             Bacterial regulatory proteins, luxR family
    3.2e-07   29.8   0.1    1.1e-06   28.1   0.1    2.0  1  Sigma70_r4       Sigma-70, region 4
    9.8e-06   25.2   0.1    0.00011   21.9   0.0    2.3  2  HTH_23           Homeodomain-like domain
    0.00058   19.6   2.9      0.002   17.8   1.0    2.2  2  Sigma70_r2       Sigma-70 region 2
     0.0031   17.5   1.0      0.019   15.0   0.4    2.6  2  HTH_29           Winged helix-turn helix
     0.0036   17.1   0.3       0.31   10.9   0.0    2.6  2  HTH_AsnC-type    AsnC-type helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.6   0.1       0.44   10.5   0.0    2.6  2  HTH_Crp_2        Crp-like helix-turn-helix domain
      0.012   15.7   0.1          3    8.0   0.0    2.5  2  Sigma70_r3       Sigma-70 region 3
      0.014   15.2   0.0      0.031   14.1   0.0    1.5  1  Terminase_5      Putative ATPase subunit of terminase (gpP-li
      0.015   15.7   0.1       0.12   12.8   0.0    2.3  2  HTH_40           Helix-turn-helix domain
      0.021   14.6   0.0      0.077   12.8   0.0    2.0  1  HTH_38           Helix-turn-helix domain
      0.022   14.2   0.0       0.29   10.6   0.0    2.3  2  HTH_Tnp_ISL3     Helix-turn-helix domain of transposase famil
      0.094   12.5   0.0        1.6    8.6   0.0    2.3  2  HTH_IclR         IclR helix-turn-helix domain
        0.1   12.7   0.0       0.21   11.7   0.0    1.5  1  HTH_7            Helix-turn-helix domain of resolvase
       0.11   12.6   0.0       0.25   11.4   0.0    1.6  1  Phage_terminase  Phage terminase small subunit
       0.13   12.0   0.0       0.27   10.9   0.0    1.5  1  Crp              Bacterial regulatory proteins, crp family


Domain annotation for each model (and alignments):
>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   1.2e-12   1.2e-09       8      52 ..     137     180 ..     130     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.2e-12
                   HTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHH CS
  Sigma70_r4_2   8 laeLperqreifllryleglsykEIAellgisegtVksrlsRArk 52 
                   l +Lp r  e+f + + eg+s +EIA++lg++e++V+s+   Ar+
    KIR64726.1 137 LHRLPARHAEVFQM-AQEGFSNQEIARILGLTENSVRSYKVAARR 180
                   789***********.78**********************999986 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.7     6e+03      43      50 ..      77      84 ..      76      85 .. 0.85
   2 !   31.9   0.0   6.5e-11   6.8e-08       3      41 ..     140     178 ..     138     183 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.7
                HHHT-SSH CS
        GerE 43 kKLnvksr 50
                +KL+v++r
  KIR64726.1 77 SKLRVHDR 84
                69****98 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 6.5e-11
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksni 41 
                 L  R +ev+++  eG+sn+eIA++l++ e++V+++k  +
  KIR64726.1 140 LPARHAEVFQMAQEGFSNQEIARILGLTENSVRSYKVAA 178
                 66899******************************9665 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1     1e-09   1.1e-06       1      50 []     136     184 ..     136     184 .. 0.95

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1e-09
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 +L++Lp+r+ ev+++   eg + +EI+++lg+++  Vr+ +  A+r LR+
  KIR64726.1 136 WLHRLPARHAEVFQMAQ-EGFSNQEIARILGLTENSVRSYKVAARRGLRE 184
                 79**************8.67799***********************9996 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.6   6.3e+02      28      39 ..      41      52 ..      31      58 .. 0.78
   2 !   21.9   0.0     1e-07   0.00011       6      39 ..     143     176 ..     141     186 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.6
      HTH_23 28 gvsrrTvyrwlk 39
                  s+++v r+l+
  KIR64726.1 41 EASYHQVERILR 52
                5699******87 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 1e-07
      HTH_23   6 eRlrillllaeGlsvreIAreLgvsrrTvyrwlk 39 
                 +++++ ++++eG s +eIAr+Lg +++ v+ ++ 
  KIR64726.1 143 RHAEVFQMAQEGFSNQEIARILGLTENSVRSYKV 176
                 799**************************98865 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   1.0   1.9e-06     0.002       3      69 ..      41     105 ..      39     107 .. 0.90
   2 ?    1.3   0.0      0.29     3e+02       6      32 ..     130     156 ..     127     186 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSS CS
  Sigma70_r2   3 erylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrr 69 
                 e+ + +v r++r+ +++++ +eD ++ea+l     + +++   ++++  w++ +ar+++  ++ ++ 
  KIR64726.1  41 EASYHQVERILRSACRDREVVEDALNEAYLHGRVQWSKLR--VHDRPIGWIIVTARHKIRKDHQRHL 105
                 567899*************************999999999..7779*************99887765 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.29
                 HHHHHHHHHHCT-THHHHHHHHHHHHH CS
  Sigma70_r2   6 lplvkrlarrllgsgadaeDlvQeafl 32 
                 + l++++++rl  ++a++  ++Qe+f 
  KIR64726.1 130 QELLRGWLHRLPARHAEVFQMAQEGFS 156
                 568899999999999999999999985 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.6   3.8e+03      19      35 ..      37      53 ..      33      76 .. 0.69
   2 !   15.0   0.4   1.8e-05     0.019       1      37 [.     144     179 ..     144     207 .] 0.81

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.6
      HTH_29 19 Akllglsrrtvyrwlkr 35
                A+++  s+ +v r+l+ 
  KIR64726.1 37 AAFTEASYHQVERILRS 53
                56666677777776654 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.8e-05
      HTH_29   1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfe 37 
                 +a++ +++ eG s  ++iA++lgl++ +v+ ++ + +
  KIR64726.1 144 HAEVFQMAQEGFS-NQEIARILGLTENSVRSYKVAAR 179
                 57888999****8.****************9986644 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00029      0.31      19      35 ..     156     172 ..     155     173 .. 0.94
   2 ?    3.5   0.1      0.06        64      16      28 ..     178     190 ..     175     199 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
  HTH_AsnC-type  19 syaeLAervGlSestvl 35 
                    s++e+A+ +Gl+e+ v+
     KIR64726.1 156 SNQEIARILGLTENSVR 172
                    89************998 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.06
  HTH_AsnC-type  16 aRisyaeLAervG 28 
                    aR+  +eLAe+ G
     KIR64726.1 178 ARRGLRELAEEAG 190
                    9*********998 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.18   1.9e+02      25      44 ..      34      53 ..      17      67 .. 0.85
   2 ?   10.5   0.0   0.00042      0.44       6      38 ..     136     171 ..     133     174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.18
                HHHHHHTTSSHHHHHHHHHH CS
   HTH_Crp_2 25 eelAsmlGltretvsrilse 44
                +e A++  ++  +v ril+ 
  KIR64726.1 34 QEFAAFTEASYHQVERILRS 53
                899**************985 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00042
                 HHHHHHCTTTC...EEEEEHHHHHHHHHTTSSHHHH CS
   HTH_Crp_2   6 fLlrlaeragg...eielpltqeelAsmlGltretv 38 
                 +L+rl +r ++     +  ++++e+A++lGlt  +v
  KIR64726.1 136 WLHRLPARHAEvfqMAQEGFSNQEIARILGLTENSV 171
                 88888555343232234479************9988 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.021        22       8      44 ..      18      54 ..      17      57 .. 0.92
   2 ?    8.0   0.0    0.0029         3      22      46 ..     156     180 ..     149     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.021
                HHHHHHHHHHSSXXXHHHHHHHHTXXHHHHHHHHHHH CS
  Sigma70_r3  8 raqreLeqelgrePtpeEiAeeLglseekVrevleaa 44
                +a+re e +  +++ ++E A++++ s  +V+++l+ a
  KIR64726.1 18 EATREAEATRVKAAHDQEFAAFTEASYHQVERILRSA 54
                589999999999**********************986 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0029
                 XHHHHHHHHTXXHHHHHHHHHHHXX CS
  Sigma70_r3  22 tpeEiAeeLglseekVrevleaare 46 
                 +++EiA  Lgl+e+ Vr++  aar+
  KIR64726.1 156 SNQEIARILGLTENSVRSYKVAARR 180
                 689***************9888876 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     3e-05     0.031      13      36 ..     154     177 ..     152     188 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3e-05
  Terminase_5  13 GyrvaeIAeelglkeatVysWkkr 36 
                  G++ +eIA+ lgl e++V s+k +
   KIR64726.1 154 GFSNQEIARILGLTENSVRSYKVA 177
                  99*******************966 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       1.2   1.2e+03      27      49 ..      59      81 ..      43     132 .. 0.60
   2 ?   12.8   0.0   0.00011      0.12       2      32 ..     144     174 ..     143     185 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.2
      HTH_40 27 sTIegHLaelieegeeidlerl.v 49
                  +e+ L e++ +g+ +++++l v
  KIR64726.1 59 EVVEDALNEAYLHGR-VQWSKLrV 81
                556666666666665.66665532 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00011
      HTH_40   2 aeetlelleeglsieeIAkerglkesTIegH 32 
                 + e +++ +eg s +eIA++ gl+e+ + ++
  KIR64726.1 144 HAEVFQMAQEGFSNQEIARILGLTENSVRSY 174
                 56789*********************99886 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.3e-05     0.077      14      35 ..     148     169 ..     145     172 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.3e-05
      HTH_38  14 erllaeGlslreIArrLgrsps 35 
                  ++ +eG s+ eIAr+Lg   +
  KIR64726.1 148 FQMAQEGFSNQEIARILGLTEN 169
                 6899*************97665 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       0.3   3.2e+02      40      50 ..      43      53 ..      34      55 .. 0.80
   2 ?   10.6   0.0   0.00027      0.29      18      46 ..     145     173 ..     144     174 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.3
  HTH_Tnp_ISL3 40 SwtTVwrildr 50
                  S + V+ril++
    KIR64726.1 43 SYHQVERILRS 53
                  899*****987 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00027
  HTH_Tnp_ISL3  18 ayilelllesrsvkavArqlgvSwtTVwr 46 
                   a ++++++e+ s +++Ar+lg+++++V+ 
    KIR64726.1 145 AEVFQMAQEGFSNQEIARILGLTENSVRS 173
                   77999999999****************85 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0015       1.6      12      37 ..     148     173 ..     146     174 .. 0.84
   2 ?    1.3   0.0      0.29     3e+02      20      30 ..     181     191 ..     177     198 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0015
                 -CTTBSS-BHHHHHHHHTS-HHHHHH CS
    HTH_IclR  12 laeapqeltlselArrtglpkStvhR 37 
                 +  a+++ +++e+Ar +gl+  +v+ 
  KIR64726.1 148 FQMAQEGFSNQEIARILGLTENSVRS 173
                 566778889*************9985 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.29
                 BHHHHHHHHTS CS
    HTH_IclR  20 tlselArrtgl 30 
                 +l+elA+++g 
  KIR64726.1 181 GLRELAEEAGY 191
                 59999999985 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0002      0.21      12      38 ..     145     171 ..     139     178 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
                 GGGGSSTTTT--STTTSSSS---SSSS CS
       HTH_7  12 nrvvkLleeGisiskIAkevnisRsTv 38 
                 ++v+++ +eG s ++IA++++++  +v
  KIR64726.1 145 AEVFQMAQEGFSNQEIARILGLTENSV 171
                 79*******************997766 PP

>> Phage_terminase  Phage terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00023      0.25      15      45 ..     147     177 ..     138     179 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00023
  Phage_terminase  15 lykEsggtlklkdIAkvLdvsestvrkWKak 45 
                      +++       +++IA +L++ e+ vr +K+ 
       KIR64726.1 147 VFQMAQEGFSNQEIARILGLTENSVRSYKVA 177
                      555555667899*****************85 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00026      0.27       4      16 ..     156     168 ..     155     171 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00026
                 -HHHHHHHHTS-H CS
         Crp   4 SRqdIAdylGlTr 16 
                 S+q+IA+ lGlT 
  KIR64726.1 156 SNQEIARILGLTE 168
                 9**********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 1635.83
//
Query:       KIR64727.1  [L=482]
Description: 1,4-beta-xylanase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-102  342.9   0.0     2e-102  342.6   0.0    1.1  1  Glyco_hydro_10   Glycosyl hydrolase family 10
    7.6e-29  100.5  10.7    7.6e-29  100.5  10.7    2.7  3  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    1.3e-25   89.9  25.9    1.2e-11   45.2   2.3    4.1  4  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
  ------ inclusion threshold ------
      0.062   13.8   0.3       0.23   11.9   0.2    2.0  2  DUF4179          Domain of unknown function (DUF4179)
       0.35   11.3  11.8        3.8    7.9   0.2    3.5  4  ET               ET module


Domain annotation for each model (and alignments):
>> Glyco_hydro_10  Glycosyl hydrolase family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.6   0.0  5.7e-106    2e-102       3     315 ..      41     331 ..      39     332 .. 0.96

  Alignments for each domain:
  == domain 1  score: 342.6 bits;  conditional E-value: 5.7e-106
                     HHHHHHTT.EEEEEESCHGHHCTTHHHHHHHHH-SEEEESSTTSHHHHCSBTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESSS--HHHHTSCCC CS
  Glyco_hydro_10   3 kelakakf.kvgtavsaselegeskekellkkefnsltaeNemKwealepsegnftfekadklvdfakennmkvrGHtLvWhsqlPdwvkkengs 96 
                      ++a++++ ++gta++ ++l+++ ++++++ +efn++taeNemK++a+ep++++f+f+++d+++++a+++++kvrGHtL Wh q P w+++   s
      KIR64727.1  41 GAAAAQSGrYFGTAIAGGRLNDS-TYSTIAGREFNMITAENEMKPDATEPNQNQFNFSAGDQIYNWATQRGLKVRGHTLAWHAQQPPWMERM--S 132
                     567888889***********998.******************************************************************96..4 PP

                     HHHHHHHHHHHHHHHHHHHHTTTTESEEEEEES-B-TTSCSBE-SHHHHHHTTHHHHHHHHHHHHH-TTSEEEEEESSTTST.SHHHHHHHHHHH CS
  Glyco_hydro_10  97 kaeeallkrlenhiktvverykgkiyawDVVNEavddnggslresvwyqilGedyiekAFeaAreadpdakLyyNDYnieea.nakrkavvelvk 190
                      ++  l++++ nhi+ v+++ykgk++awDVVNEa++++g s r+s+  q +G+d+ie AF++Ar+adp++kL+yNDYnie+  + k+++v+++++
      KIR64727.1 133 GSA--LRSAMINHINGVMAHYKGKLAAWDVVNEAFNEDG-SRRQSN-LQGTGNDWIEVAFRTARAADPSTKLCYNDYNIENWsYGKTQGVYRMIQ 223
                     445..99*******************************7.778887.6889******************************9999********** PP

                     HHHHTT----EEEE--EEETTSCHHHHHHHHHHHHHTTTSEEEEEEEEEECETTSSHHHHHHHHHHHHHHHHHHHHHCTTTEEEEEESSSBGGGS CS
  Glyco_hydro_10 191 elkekgvpidgvGiQsHlsvdspsiseieaalkklaalglevaitELDirvkkssseeealeaqakrykelvkallevkekitgvtvWgvtDkys 285
                     ++k++gvpid+vG+Q+H++ +s  +s+++++l+++aalg++va+tE+D+++           a++++y+ l++a+l+v+ ++ g+tvWgv+D++s
      KIR64727.1 224 DFKSRGVPIDCVGLQTHFTGGSSLPSNFQTTLSSFAALGVDVALTEVDVTN-----------ASTTQYAGLTQACLNVP-RCIGITVWGVRDSDS 306
                     *************************************************99...........56789************.*************** PP

                     TTHHHSTTEC--SSB-TTS-B-HHHHHHHH CS
  Glyco_hydro_10 286 Wlsglkkkeeapllfdsnyqpkpayeavvd 315
                     W+s+     e+pllfd   ++k+ay++v++
      KIR64727.1 307 WRSN-----ENPLLFDGGGNKKAAYTSVLN 331
                     ***9.....******************987 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.35   1.2e+03      79     106 ..      90     116 ..      77     128 .. 0.77
   2 ?   -3.6   0.0       3.4   1.2e+04      65      87 ..     192     214 ..     170     221 .. 0.60
   3 !  100.5  10.7   2.1e-32   7.6e-29       4     127 .]     359     477 ..     357     480 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.35
                     GGGCEEEETTTTEEEETTTSEEEEESTT CS
  Ricin_B_lectin  79 gnqrWefdkdgtqirhkksgkCLdvkga 106
                     ++++++f   g+qi++  +++ L v g 
      KIR64727.1  90 NQNQFNFS-AGDQIYNWATQRGLKVRGH 116
                     47788898.5555999999999998876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.4
                     TTSBEEEEETTTTSGGGCEEEET CS
  Ricin_B_lectin  65 egakvvlakChkgkgnqrWefdk 87 
                     + a    + C ++ + + W++ k
      KIR64727.1 192 RAADPSTKLCYNDYNIENWSYGK 214
                     44444444555444555555553 PP

  == domain 3  score: 100.5 bits;  conditional E-value: 2.1e-32
                     EEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEETTSEEEETT.TTEEEEESSSSTTSBEEEEETTTTSGGGCEEEETTTTEEEETTT CS
  Ricin_B_lectin   4 eirnvasgkCLdvegeska.gapvglydChgskgkQlwtltkdgeirskaqselCldvsstaegakvvlakChkgkgnqrWefdkdgtqirhkks 97 
                     +i++ +sg C+dv+++s++ g++v+lydChg+++ Q+wt+t+ +++ +   +++Cld++++ +ga v++++C+ g++nq+W+++++gt i   +s
      KIR64727.1 359 RIVGSQSGRCIDVPNSSQTnGTRVQLYDCHGQTN-QQWTYTASKQLTVYG-GSRCLDANGSGNGAAVQIYSCN-GGANQQWNVNSNGT-ISGVQS 449
                     689999**************************88.*************87.*********************9.999***********.****** PP

                     SEEEEESTTSSTTTBEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  98 gkCLdvkgasksneklilkkcdsgsdsQkW 127
                     g+CLdv g ++++ +++l++c +g+++Q++
      KIR64727.1 450 GRCLDVWGTGNGQ-QVQLYDC-HGQANQQF 477
                     *******999887.*****99.******97 PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.8     1e+04      27      36 ..     271     280 ..     266     291 .. 0.58
   2 !   45.2   2.3   3.3e-15   1.2e-11      12      89 .]     355     426 ..     349     426 .. 0.89
   3 !   40.4   4.3   9.9e-14   3.6e-10      20      89 .]     406     467 ..     400     467 .. 0.89
   4 !   31.9   3.8   4.7e-11   1.7e-07       1      56 [.     432     481 ..     432     482 .] 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.8
                      ECGCCTBCTT CS
  RicinB_lectin_2  27 dvaggstang 36 
                      dv+++st++ 
       KIR64727.1 271 DVTNASTTQY 280
                      5555555532 PP

  == domain 2  score: 45.2 bits;  conditional E-value: 3.3e-15
                      TTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  12 dgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      +g  +i+  +sg+++dv+++s++ng++vq ++c+g++nqqW+ +     + +++    +++Ld +  ++ nG++vq++
       KIR64727.1 355 GGANRIVGSQSGRCIDVPNSSQTNGTRVQLYDCHGQTNQQWTYTA----SKQLTVYGGSRCLDAN--GSGNGAAVQIY 426
                      566789999*********************************854....569***999*****99..458*****987 PP

  == domain 3  score: 40.4 bits;  conditional E-value: 9.9e-14
                      TSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  20 vasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                       +  ++Ld++g+++   a+vq ++c+g+anqqW ++++g    +i  ++sg++Ldv+  +t nG++vq++
       KIR64727.1 406 YGGSRCLDANGSGNG--AAVQIYSCNGGANQQWNVNSNG----TISGVQSGRCLDVW--GTGNGQQVQLY 467
                      566799999999865..9*****************8888....9*************..789******97 PP

  == domain 4  score: 31.9 bits;  conditional E-value: 4.7e-11
                      CCGEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEEC CS
  RicinB_lectin_2   1 anQqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrled 56 
                      anQqW++    +   ti  v+sg++Ldv g ++   ++vq ++c+g+anqq+rl+ 
       KIR64727.1 432 ANQQWNV----NSNGTISGVQSGRCLDVWGTGNG--QQVQLYDCHGQANQQFRLVA 481
                      69*****....44459************998865..8****************975 PP

>> DUF4179  Domain of unknown function (DUF4179)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   6.4e-05      0.23       4      44 ..       9      46 ..       6      93 .. 0.79
   2 ?   -2.2   0.0       1.6   5.9e+03      23      49 ..     141     172 ..     135     184 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.4e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.--SS-HHHH CS
     DUF4179  4 rrikkvaaaaaalvllllssrllspalAsalnpvigslfek 44
                rr+  va aa alvl+  +++l+ p+lA+a  +++g++ ++
  KIR64727.1  9 RRRAVVATAASALVLA--GAALVVPSLAQAA-TTLGAAAAQ 46
                5555566666666666..**********999.777766555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.6
                 XXXXXXXXXXXX......--SS-HHHHT--SS CS
     DUF4179  23 srllspalAsal....n.pvigslfeklsdsk 49 
                 ++ ++ ++A ++       v++++f++ ++ +
  KIR64727.1 141 INHINGVMAHYKgklaAwDVVNEAFNEDGSRR 172
                 57788889988887774477777777665544 PP

>> ET  ET module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       4.6   1.7e+04      55      76 ..     273     293 ..     267     294 .. 0.53
   2 ?    7.9   0.2    0.0011       3.8      21      46 ..     365     390 ..     358     400 .. 0.90
   3 ?    2.4   0.7     0.058   2.1e+02      19      44 ..     404     429 ..     389     446 .. 0.72
   4 ?    7.6   1.0    0.0013       4.7      10      46 ..     437     472 ..     428     479 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.6
          ET  55 snecasleedvtgccCnsadnC 76 
                 +n+ ++   ++t  c n    C
  KIR64727.1 273 TNASTTQYAGLTQACLNV-PRC 293
                 555555555566555443.555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0011
          ET  21 dGeCasvsltttvngqnvtlytCdpt 46 
                 +G+C  v  +++ ng+ v+ly C  +
  KIR64727.1 365 SGRCIDVPNSSQTNGTRVQLYDCHGQ 390
                 59******9**************866 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.058
          ET  19 aCdGe..CasvsltttvngqnvtlytCd 44 
                 +  G   C  ++  +  ng+ v++y+C 
  KIR64727.1 404 TVYGGsrCLDAN--GSGNGAAVQIYSCN 429
                 444431477777..999**********7 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0013
          ET  10 kaistgaevaCd.GeCasvsltttvngqnvtlytCdpt 46 
                 +  s+g+ +  + G+C  v   +t ngq+v+ly C  +
  KIR64727.1 437 NVNSNGTISGVQsGRCLDVW--GTGNGQQVQLYDCHGQ 472
                 4445555555555******9..99***********865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3594.54
//
Query:       KIR64728.1  [L=85]
Description: hypothetical protein TK50_03665 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00065   19.7   0.0     0.0009   19.3   0.0    1.2  1  HTH_3     Helix-turn-helix
     0.0022   18.3   0.0     0.0032   17.8   0.0    1.2  1  HTH_31    Helix-turn-helix domain
     0.0039   17.2   0.0     0.0046   17.0   0.0    1.2  1  HTH_35    Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.017   14.9   0.0    1.3  1  HTH_23    Homeodomain-like domain
       0.11   12.4   0.0       0.17   11.8   0.0    1.3  1  HTH_25    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.5e-07    0.0009       8      55 .]      18      65 ..      14      65 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.5e-07
                TTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3  8 lglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsldel 55
                + l+++++Ae++Gv+ +++++   G++ P +e+   l + L+v+l++l
  KIR64728.1 18 RRLTIQQVAEEIGVPERHLRNALAGKTYPMPEVRRGLPRLLDVPLSDL 65
                6699*****************************999999999999876 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   8.8e-07    0.0032      13      59 ..      18      63 ..      16      66 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 8.8e-07
      HTH_31 13 aGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpa 59
                ++L+ ++vAe +gv e +l+    G+   p p+v + l r+l+++ +
  KIR64728.1 18 RRLTIQQVAEEIGVPERHLRNALAGKTY-PMPEVRRGLPRLLDVPLS 63
                79*************************8.**************9965 PP

>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.3e-06    0.0046       8      58 ..      12      65 ..       7      72 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.3e-06
      HTH_35  8 iAaLrkrgttLaalsreaglssstlsnaltrp...wpkgEalIAeaLgvppeei 58
                + +L kr+ t++++++e g  + +l+nal+ +   +p+  + +  +L+vp + +
  KIR64728.1 12 KVELFKRRLTIQQVAEEIGVPERHLRNALAGKtypMPEVRRGLPRLLDVPLSDL 65
                56899************************8643224444455666666665555 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   4.8e-06     0.017      12      38 ..      14      40 ..      11      44 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.8e-06
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwl 38
                 l++++l+++++A+e gv++r++++ l
  KIR64728.1 14 ELFKRRLTIQQVAEEIGVPERHLRNAL 40
                577889*****************9976 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.7e-05      0.17       8      28 ..      17      37 ..      16      40 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.7e-05
                TTT--HHHHHHHSS--HHHHH CS
      HTH_25  8 arglsleevaketkIrkdyle 28
                +r+l++++va+e+ +++++l+
  KIR64728.1 17 KRRLTIQQVAEEIGVPERHLR 37
                799****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 613.04
//
Query:       KIR64729.1  [L=66]
Description: hypothetical protein TK50_03670 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 567.38
//
Query:       KIR64730.1  [L=75]
Description: hypothetical protein TK50_03675 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 598.40
//
Query:       KIR64731.1  [L=438]
Description: hypothetical protein TK50_03680 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-14   54.5   0.1    1.8e-14   53.8   0.1    1.4  1  AAA_25    AAA domain
  ------ inclusion threshold ------
      0.079   12.2   0.0       0.11   11.6   0.0    1.2  1  TIP49     TIP49 P-loop domain
       0.31   11.5   2.0        3.3    8.2   1.8    2.3  2  Latarcin  Latarcin precursor


Domain annotation for each model (and alignments):
>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.1     3e-18   1.8e-14      27     190 ..      92     249 ..      61     253 .. 0.82

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 3e-18
      AAA_25  27 kgllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlra.vgealrddarllvldlagveslpLfakdrggt 124
                 kgll a + a+l+++ +tGKt+la+dla +++ G+p+lg +++ + +V ++s+E   +elrr +   vg +   d+rl+v+d++g+ ++++++      
  KIR64731.1  92 KGLLGARHNAVLIAQYKTGKTALAIDLARSLVDGEPFLGTFPVVRSRVGFWSLEVELNELRREFMDpVGIK--SDRRLAVWDGVGQ-PVNILS------ 181
                 5699***********************************9999******************9998746655..589*****98775.666543...... PP

      AAA_25 125 lltadvdaleaaieevegvrlvviDplsr..algg..densnsdvgalvealeriarrtgaav.llvhHvg 190
                   ++  ++  +++++ ++v++  iD+l+   ++ g    ++n +++al++a+++i+r+ ++ v +++ H+ 
  KIR64731.1 182 --EPGKAWTVNWLKH-YKVKVWMIDSLAVlaVWVGvdIDKDNGQTRALFAAIDEIKREADVQVsFILAHTP 249
                 ..6666889******.67*********974366667545667778***************88624556765 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.9e-05      0.11      52     120 ..     101     172 ..      91     206 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXX-S-EEEE CS
       TIP49  52 avLlaGpsgtGktalaiaiskelgedvpfv...alsgsev..yslevkktevltqalrksigvrikeekevleG 120
                 avL+a +  tGktalai ++++l +  pf     ++ s v  +slev+  e l +++   +g++   +  v +G
  KIR64731.1 101 AVLIA-QYKTGKTALAIDLARSLVDGEPFLgtfPVVRSRVgfWSLEVELNE-LRREFMDPVGIKSDRRLAVWDG 172
                 56665.778*******************96322455555443888888776.5566667777777766666666 PP

>> Latarcin  Latarcin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.8   0.00056       3.3       7      50 ..      13      49 ..      12      75 .. 0.73
   2 ?    0.7   0.0      0.12   7.2e+02      20      39 ..     270     290 ..     229     367 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00056
    Latarcin  7 eeleaeeLdelergainrklmemvnnlRkvqgRLeemvenlrkv 50
                eel +eeL+e e++++        n +Rk + +L   +e+ r+v
  KIR64731.1 13 EELTDEELEESEQEEYD-------NLVRKEKLKLRAQAEARRQV 49
                8***********99994.......44555555555555554443 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.12
    Latarcin  20 gainrklmemvnnlR..kvqgR 39 
                 +++ r +  m nn+R  +v+gR
  KIR64731.1 270 AGA-RWIFTMHNNIRflRVNGR 290
                 333.668899999995556666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2937.88
//
Query:       KIR64732.1  [L=75]
Description: hypothetical protein TK50_03685 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 529.27
//
Query:       KIR64733.1  [L=69]
Description: hypothetical protein TK50_03690 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 516.79
//
Query:       KIR64734.1  [L=247]
Description: hypothetical protein TK50_03695 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1995.83
//
Query:       KIR64735.1  [L=63]
Description: hypothetical protein TK50_03700 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.28s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 465.95
//
Query:       KIR64736.1  [L=71]
Description: hypothetical protein TK50_03705 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.065   13.6   0.1       0.14   12.6   0.0    1.5  1  Mso1_C    Membrane-polarising domain of Mso1


Domain annotation for each model (and alignments):
>> Mso1_C  Membrane-polarising domain of Mso1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.6e-06      0.14      21      51 ..      10      42 ..       2      49 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.6e-06
      Mso1_C 21 RlqdmynssrdqsipgaGynsqSYp..partns 51
                 l ++ +++ d+ + g+G ++q Yp  p+ ++ 
  KIR64736.1 10 HLNSLVDRTDDSEFGGVGGLTQPYPhePSASEK 42
                6889999999999************99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       188  (0.0104858); expected 358.6 (0.02)
Passed bias filter:                      149  (0.00831056); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 554.24
//
Query:       KIR64737.1  [L=164]
Description: hypothetical protein TK50_03710 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.031   13.4   0.2      0.036   13.2   0.2    1.1  1  Pro-rich_19  Proline-rich 19


Domain annotation for each model (and alignments):
>> Pro-rich_19  Proline-rich 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2     2e-06     0.036       5      86 ..      26     115 ..      23     158 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2e-06
  Pro-rich_19   5 gpapqpfqqaekpgrvrrrktrrernealvgsrrpl...arqdppvasrdppvalrd.pvaptap....klvvitqGrlsrehrGlfnhe 86 
                  +  ++++  a k  rvrr+k  r   ea+  s+  l   a+++ p   r+ + +l++ +++p+ +    +  v   Grls  hr l++ +
   KIR64737.1  26 DVLERAYAAARKEWRVRRKKQYRAGSEARDESHDELvyrAKKEGPKELRQLKTDLEEgRITPQEAegkmRNFVAEHGRLSELHRSLIEDD 115
                  556778889999******************99987522267788889999988887646777644232256899************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       863  (0.0481343); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1344.72
//
Query:       KIR64738.1  [L=171]
Description: hypothetical protein TK50_03715 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1367.60
//
Query:       KIR64739.1  [L=288]
Description: hypothetical protein TK50_03720 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-05   23.1   0.1    8.1e-05   22.4   0.1    1.3  1  SprT-like  SprT-like family


Domain annotation for each model (and alignments):
>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   4.5e-09   8.1e-05      61     104 ..      95     141 ..      47     153 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 4.5e-09
   SprT-like  61 edrllntLaHElcHlalfvisg...vrnnpHGaeFkawaakvekala 104
                  + +++++aHE++H ++  + g    ++++HG +F ++a++v +al+
  KIR64739.1  95 PELVRDVVAHEMIHQIISDYPGpsdHDHDGHGDRFYKVAQTVAQALD 141
                 567899***********8887766555***************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1942.88
//
Query:       KIR64740.1  [L=230]
Description: hypothetical protein TK50_03725 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1748.72
//
Query:       KIR64741.1  [L=60]
Description: hypothetical protein TK50_03730 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 470.04
//
Query:       KIR64742.1  [L=84]
Description: hypothetical protein TK50_03745 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 585.97
//
Query:       KIR64743.1  [L=61]
Description: hypothetical protein TK50_03750 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      120  (0.00669307); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.44
# Mc/sec: 412.58
//
Query:       KIR64744.1  [L=200]
Description: hypothetical protein TK50_03755 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.14   12.0   0.2       0.23   11.3   0.2    1.3  1  Phage_holin_2_3  Bacteriophage holin family HP1


Domain annotation for each model (and alignments):
>> Phage_holin_2_3  Bacteriophage holin family HP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   1.3e-05      0.23      25      55 ..      15      45 ..      12      46 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.3e-05
  Phage_holin_2_3 25 eWAiviGIicgvvTfliNwyykrkelrlrek 55
                      W ++ G+i++v+ ++++w   r e+r+r++
       KIR64744.1 15 AWGSLGGLIMSVLAVIATWGLLRHEIRVRRE 45
                     699************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1317.66
//
Query:       KIR64745.1  [L=496]
Description: hypothetical protein TK50_03760 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-19   70.9   0.6    3.1e-19   69.5   0.4    1.9  2  Resolvase        Resolvase, N terminal domain
    3.7e-10   40.2   0.4    7.4e-10   39.2   0.4    1.5  1  Zn_ribbon_recom  Recombinase zinc beta ribbon domain
    5.8e-05   23.4   0.0    0.00022   21.6   0.0    2.0  1  Recombinase      Recombinase
  ------ inclusion threshold ------
      0.056   13.5   0.0       0.23   11.6   0.0    2.0  3  LysM             LysM domain
       0.43   10.0   5.7       0.91    9.0   0.1    3.0  2  HTH_Tnp_ISL3     Helix-turn-helix domain of transposase famil


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.4   8.6e-23   3.1e-19       1     145 [.       6     156 ..       6     157 .. 0.94
   2 ?   -2.9   0.0       1.8   6.4e+03       4      61 ..     179     232 ..     177     236 .. 0.70

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 8.6e-23
                 EEEEEEES---..--THHHHHHHHHHHH-S--..SE...EEEE.S-TT-..TT.-HHHHHHHHHHTT-EE.EEEESSCCCC-S...S-HHHHHHHHHTT CS
   Resolvase   1 aigYaRvStee..qddslerQkealrayakenglkivkefeDkgvSGak..le.RpglkrllaalregkgdvlvvekldRLaRsvrdlltlleelrekg 94 
                 a++Y+R S +      ++++Q+e++ra+a++ g+++  +f+D+  S++   ++ Rpg++ +++++++g++ +++ ++ +RL+R+  +  +l+  + e++
  KIR64745.1   6 AAIYCRISHDRegRALGVAKQEEDCRALAERLGWEVGHVFVDNDLSASVhgKKpRPGFEDMIRRVEAGEFNAVLAWSTSRLTRRPMEHERLIPLFWERK 104
                 689********554448************999****9***********965448********************************************* PP

                 -EEEESS...SS----HHHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHH CS
   Resolvase  95 vslvsldeg.idtstpmgrlllqilaalaeferelirertkeglaaakakGk 145
                 + + +++ g id +t+ gr   +  a   + e+e ++er+ + +++++++G+
  KIR64745.1 105 IPISTVKAGdIDYTTARGRSRARDDARRDAEEAEETSERVERDVQRRAEAGE 156
                 *******755**************************************9996 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.8
                 EEEES-----THHHHHHHHHHHH-S--..SE...EEEE.S-TT-TT-HHHHHHHHHHT CS
   Resolvase   4 YaRvSteeqddslerQkealrayakenglkivkefeDkgvSGakleRpglkrllaalr 61 
                 Y+R+  ++ d    r ++a r++ + +  ++  + +D g+  ++l+R   + ++a lr
  KIR64745.1 179 YVRFRHHTTD--APRVRDAARRLLAGE--TVYGIAKDFGMQPRTLKRAITNPAIAGLR 232
                 7777777777..778888888887666..56666888888888888776666666555 PP

>> Zn_ribbon_recom  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.4   2.1e-13   7.4e-10       1      57 [.     275     330 ..     275     331 .. 0.93

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 2.1e-13
  Zn_ribbon_recom   1 lLsGllrCgeCGspmtrrkrk.gkrhyYrCstyrrkgkkCsnhsireekleeavleel 57 
                      +LsGl++C +CG++mt +++k  + + Y Cs ++++g +C   +i    lee++ e++
       KIR64745.1 275 MLSGLVYC-HCGNRMTSTSAKrTEGPTYECSPTKTGG-GCGRARIVMRPLEEYIAEQV 330
                      69******.8*******99875666************.*****************987 PP

>> Recombinase  Recombinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   6.1e-08   0.00022      42     102 ..     215     260 ..     186     262 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 6.1e-08
  Recombinase  42 skstvkriLtnpvyiGilvynktkgkkkkkrkddsewivieathepiiseelfeavqerls 102
                  ++ t+kr +tnp++ G + yn +                +++++epi+++e +e+v e+ls
   KIR64745.1 215 QPRTLKRAITNPAIAGLREYNGQF---------------YPTPWEPIVDREDWERVCEILS 260
                  5789********************...............******************9997 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.7   9.5e+03       5      31 ..      26      52 ..      25      62 .. 0.63
   2 ?   -3.2   0.0       2.5   9.1e+03       2       7 ..     109     114 ..     109     115 .. 0.92
   3 ?   11.6   0.0   6.4e-05      0.23       6      26 ..     202     222 ..     200     226 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.7
                TT--HHHHHHHCTCHHHHHHHHCTCSS CS
        LysM  5 kGDTLwsIAkrygitveklleaNnlss 31
                + + + ++A r g+ v      N ls 
  KIR64745.1 26 QEEDCRALAERLGWEVGHVFVDNDLSA 52
                566678889888887765555555555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.5
                 EE-TT- CS
        LysM   2 tVkkGD 7  
                 tVk GD
  KIR64745.1 109 TVKAGD 114
                 8****9 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 6.4e-05
                 T--HHHHHHHCTCHHHHHHHH CS
        LysM   6 GDTLwsIAkrygitvekllea 26 
                 G+T+++IAk +g++ ++l++a
  KIR64745.1 202 GETVYGIAKDFGMQPRTLKRA 222
                 9****************9876 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00025      0.91      10      48 ..     183     223 ..     180     225 .. 0.88
   2 ?    0.8   2.3     0.089   3.2e+02       7      19 ..     387     399 ..     386     411 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00025
  HTH_Tnp_ISL3  10 sriTl...rleayilelllesrsvkavArqlgvSwtTVwril 48 
                   +++T+   r ++++ +ll    +v  +A+++g  ++T++r++
    KIR64745.1 183 RHHTTdapRVRDAARRLLAGE-TVYGIAKDFGMQPRTLKRAI 223
                   567777889999999**99**.******************97 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.089
  HTH_Tnp_ISL3   7 rrrsriTlrleay 19 
                   rrr+r T rlea 
    KIR64745.1 387 RRRARLTDRLEAN 399
                   89********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3599.24
//
Query:       KIR64746.1  [L=245]
Description: secretion system protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-16   60.1   3.2    3.7e-16   59.2   3.2    1.5  1  T2SSF          Type II secretion system (T2SS), protein F


Domain annotation for each model (and alignments):
>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   3.2   2.1e-20   3.7e-16       2     122 ..     111     231 ..     110     234 .. 0.94

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 2.1e-20
                 HHHHHHHHHTT--HHHHHHHHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHCT-TT..TS-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHH CS
       T2SSF   2 lrqlatllsaGvplveaLellaeeaengplaeelkriarrlraGgslsealertps.sefpelvvqlirageeggnLaevLerlaeyleeerelrrkll 99 
                 +++la++++aG+p+++++ ++ae    gpl+++l r+ r l  Gg  +ea+++    +   +l+ + +r+ ++g  La +L rla++l+++r ++++  
  KIR64746.1 111 ADLLASAMRAGAPVDRSVLAVAEAL-GGPLGDRLGRVGRTLLLGGGSEEAWAHLAAvPGAERLAGAALRSSSSGAALAGALTRLADDLRADRSTAAEAS 208
                 689**********************.**************************55552577*************************************** PP

                 HHHHTTXXXXXXXXXXXXXXXXX CS
       T2SSF 100 aallepllllvvallvllillai 122
                 a+++++l++l+++l++l+++++ 
  KIR64746.1 209 ARRAGVLIVLPLGLCFLPAFILA 231
                 *******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1887.99
//
Query:       KIR64747.1  [L=121]
Description: helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 964.64
//
Query:       KIR64748.1  [L=192]
Description: hypothetical protein TK50_03795 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1451.21
//
Query:       KIR64749.1  [L=68]
Description: hypothetical protein TK50_03800 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 546.34
//
Query:       KIR64750.1  [L=144]
Description: serine/threonine protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-24   86.2   0.3    1.9e-24   86.0   0.3    1.1  1  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.072   13.3   0.2       0.58   10.4   0.1    2.4  2  DUF4213      Putative heavy-metal chelation


Domain annotation for each model (and alignments):
>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.3   2.2e-28   1.9e-24       1     125 []       8     140 ..       8     140 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 2.2e-28
  HATPase_c_2   1 isadpehvrtvrevaeavlrraglseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpg.fdpetlpdpteeep.....k 92 
                  +s  p hvrt+r v  av+rrag+ e+llde+rla++Eact+av  +++ +  +pv v++ sd++a  v+v D++p       l+  +++++     +
   KIR64750.1   8 FSPAPVHVRTARLVGVAVARRAGVREDLLDEVRLAIGEACTRAVALHRQYNVPDPVLVEM-SDSGAYAVRVVDRAPIeASIG-LAALDADQLaneslN 103
                  678899*****************************************************7.9999***********955554.433334444567899 PP

  HATPase_c_2  93 eslkegGrGlalikglvDevey....dgegnvvtmsk 125
                  e++ + G+G al++g+v+++++    +g g++v+m++
   KIR64750.1 104 EDDLTTGVGFALLAGFVEDLQVrpveEGVGTEVRMVW 140
                  9*********************9999999******99 PP

>> DUF4213  Putative heavy-metal chelation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   6.5e-05      0.58      52      72 ..      74      94 ..      13      95 .. 0.78
   2 ?    1.8   0.0     0.033     3e+02      48      70 ..      94     116 ..      92     119 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.5e-05
     DUF4213 52 aelllswnplersvGlAaiNA 72
                a  + +  p+e+s+GlAa+ A
  KIR64750.1 74 AVRVVDRAPIEASIGLAALDA 94
                44566799**********977 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.033
     DUF4213  48 arelaelllswnplersvGlAai 70 
                 a++la++ l ++ l   vG A +
  KIR64750.1  94 ADQLANESLNEDDLTTGVGFALL 116
                 899****************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 979.86
//
Query:       KIR64751.1  [L=794]
Description: potassium transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.5e-240  798.5  41.6   7.9e-240  797.9  41.6    1.2  1  H_PPase   Inorganic H+ pyrophosphatase
  ------ inclusion threshold ------
      0.055   13.2   0.1        3.4    7.4   0.1    3.0  2  RSN1_TM   Late exocytosis, associated with Golgi transport
        9.1    6.5  31.7    5.3e+02    0.7  15.3    5.3  3  EI24      Etoposide-induced protein 2.4 (EI24)


Domain annotation for each model (and alignments):
>> H_PPase  Inorganic H+ pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  797.9  41.6  1.3e-243  7.9e-240       1     650 []      30     729 ..      30     729 .. 0.96

  Alignments for each domain:
  == domain 1  score: 797.9 bits;  conditional E-value: 1.3e-243
                 HHHHHHHHHHHHHHHTS--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT............HHHHHHHHHHHHHHHHHHHHHHHHH CS
     H_PPase   1 vlallfalvllkkvlkedegtekmkeiaeaikegaeaflkrqykviailvvvlavlllllal.........lsvltaiaflvGallSalagyigmkvav 90 
                 ++al+fa+ l+k+vl++ +gt++m+ei+ a++ega+a+l rq++++ai+vv+ +vll+ll +         +++  +++f+vGal+Sa++g  gm++a+
  KIR64751.1  30 LVALVFAAALTKAVLAAGKGTTNMQEISGAVQEGASAYLLRQFRTLAIFVVIAVVLLFLLPVhdtdgselaVKIGRSAFFVVGALFSAFIGGAGMWLAT 128
                 589***********************************************9999999997668999999998899************************ PP

                 HHHHHHHHHHHH...SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-EE-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCHHHH CS
     H_PPase  91 ranvrtakaark...slkkalkvafrsGavmgllvvglallgvsllllllkaaalelekllellvgfglGaslvalfarvgGGiytKaADvGaDLvGKv 186
                 ran r+a+aar+   + + a+k+afr+G v+g+l+vgl+l+g +l++ll+k       +++++l gfg+Ga+l+a+f+rvgGGi+tKaADvGaDLvGKv
  KIR64751.1 129 RANLRVAAAAREatgGREGAMKIAFRTGGVVGFLTVGLGLFGAALVVLLFKG------DAPTVLEGFGFGAALLAMFMRVGGGIFTKAADVGADLVGKV 221
                 **********885546679*********************************......99*************************************** PP

                 TS---TT-TT-TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH....SHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHSS--HHHHHHHH CS
     H_PPase 187 eagipEDdprnpaviADnvGDnvGDvaGmgADlfesyvasivaamvlg...aavklvllpllvaavgilasiigillvktkedasskkkeellkaLkkg 282
                 e+gipEDdprn+a+iADnvGDnvGD+aGm+ADlfesy++++vaa++lg   +  + ++lpl+++++g+l++i+g+++++++ +++     + l+a++++
  KIR64751.1 222 EQGIPEDDPRNAATIADNVGDNVGDCAGMAADLFESYAVTLVAALILGraaFGNDGLVLPLIISTIGVLVAIVGVFITRLRASDR-----NGLTAINRA 315
                 ************************************************7654899***********************8877644.....679999999 PP

                 HHHHHHHHHHHHHHHHH-S.........................-TTTTSHHHHHHHHHHHHHHHHHHHHHHHH-TTSHHHHHHHHHGGG-HHHHHHHH CS
     H_PPase 283 llvsavlsvvlvallslll.........................keaaalklflavlvGlvagllivllteyytsteykpvkeiaeasetGaatniisG 356
                 +++sa++s+vlva++s+++                             +  +++av++G+v++++i+ lt y+t+t+ +pv++i ++s+tG+at+i++G
  KIR64751.1 316 FYLSALFSAVLVAVASFVYlkptwadllgpewraslgveggdppL-GPRGVTIAAVIIGIVLAAAIQALTGYFTETNRRPVQDIGKSSQTGPATVILAG 413
                 999999999999888886667788899999**********99852.45566788999****************************************** PP

                 HHHHHHHTHHHHHHHHHHHHHHHHHHH......HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH.T--SHHHHHHHHHHHHHHHHHHHHHHH CS
     H_PPase 357 lavgmestvlpvlviavaillsyllag......lygialaavgmLstlgitlavdayGPiaDNAggiaems.eleeevreitdklDavGNttkAitKgf 448
                 ++vg+es+v+++l+i ++++ ++ll+g      l+++ala++g+L+t+g+++a+d++GPi+DNA+g+aems +++e+  +i+ +lDavGNttkAitKg+
  KIR64751.1 414 ISVGLESAVYSALLIGAGVFGAFLLGGgsitlsLFAVALAGTGLLTTVGVIVAMDTFGPISDNAQGVAEMSgDIDENGARILTELDAVGNTTKAITKGI 512
                 *************************95566666**************************************889************************* PP

                 HHHHHHHHHHHHHHHHHHT...............HHCS--BTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSS---H CS
     H_PPase 449 aigsAalaalaLfaaylee...............aklekvdllnpevlvglliGamlvflfsaltmkaVgkaAeevveevrrqfkeipgilegkekpdy 532
                 ai++A+laa+aLf +y+++               + l++++++np+ lvgl+iGa++vflfs+l+++aV+++A +vv evrrqf+e pgi++g+++p+y
  KIR64751.1 513 AIATAVLAATALFGSYTDTlrtaysdagvgdvgaEILNSLNVANPRNLVGLIIGAAVVFLFSGLAINAVSRSAGAVVMEVRRQFRELPGIMDGTQRPEY 611
                 *********************************977899************************************************************ PP

                 HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT.SSSHHHHHHHHHHHHHHHHHCT CS
     H_PPase 533 kkcveistkaalkemilpgllavlapivvglllgaealagllagalvsgvllAifmanaGgawDNAKkyiEegelggkgseahkaaVvGDtVGDPfKDt 631
                  k+v+i+t++a++e+++pglla+lapi+vg+ lg+ ala++laga+ +g l+A+f++n+GgawDNAKk++E+g++ggkgse h+a+V+GDtVGDPfKDt
  KIR64751.1 612 GKVVDICTRDAQRELMTPGLLAILAPIAVGFGLGPGALAAYLAGAIGAGTLMAVFLSNSGGAWDNAKKLVEDGAYGGKGSESHAATVIGDTVGDPFKDT 710
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHH CS
     H_PPase 632 agpslniliklmsivslvi 650
                 agp++n+lik+m++vsl+i
  KIR64751.1 711 AGPAINPLIKVMNLVSLLI 729
                 ****************986 PP

>> RSN1_TM  Late exocytosis, associated with Golgi transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1   0.00057       3.4      76     111 ..      66      99 ..      64     112 .. 0.79
   2 ?    1.9   0.0     0.028   1.7e+02      10      38 ..     322     350 ..     315     367 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00057
     RSN1_TM  76 yvflrflkmlikiflvlavlalivLlPvnatggege 111
                 + +lr +++l  if+v+av+ l  LlPv+ t+g + 
  KIR64751.1  66 AYLLRQFRTL-AIFVVIAVVLL-FLLPVHDTDGSEL 99 
                 5678999998.78888887777.8******998765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.028
     RSN1_TM  10 lvlalvflllFlilRkknkrvYaprtylk 38 
                 ++ +lv++ +F++l+++++ +  p +  +
  KIR64751.1 322 FSAVLVAVASFVYLKPTWADLLGPEWRAS 350
                 556789999*********99988888764 PP

>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7  15.3     0.089   5.3e+02      40     137 ..      23     126 ..       9     178 .. 0.58
   2 ?   -4.1  13.1       2.8   1.7e+04      39      39 ..     347     347 ..      97     679 .. 0.58
   3 ?   -1.1   0.2      0.32   1.9e+03      27      55 ..     724     760 ..     708     771 .. 0.50

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.089
                 TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHCCTTSHHHHHHHHHHHHHHHHHHHHH..........HHTTHHH....HHHHHHHHH CS
        EI24  40 vllasllvllllllplwlfplvalllaapfygllaekvekrhlglvkslaeslkslllllllllvllpl..........liPvvglilsplllswltay 128
                 v++a++++++l+++++++  ++a   + + +++++ +v++   g  + l ++++ l++++++++vll+l          l   +g  ++++++++++a+
  KIR64751.1  23 VIAAVIALVALVFAAALTKAVLAAGKGTTNMQEISGAVQE---GASAYLLRQFRTLAIFVVIAVVLLFLlpvhdtdgseLAVKIGRSAFFVVGALFSAF 118
                 2334444444444444444455555555558888888877...44555568888888888888877777555877766544678999999999998888 PP

                 HHHHHHHHH CS
        EI24 129 fycfeyldl 137
                 + +  + +l
  KIR64751.1 119 IGGAGM-WL 126
                 554443.33 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2.8
                 - CS
        EI24  39 w 39 
                 w
  KIR64751.1 347 W 347
                 0 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHH-...........TTHHHHHHHHHHHHHH CS
        EI24  27 lllfllllvlllw...........vllasllvllllllpl 55 
                 l+ +l++ +++ w           v    ++v+++l++++
  KIR64751.1 724 LVSLLIAPAVVAWsvgddrnvglrV---GIAVVATLIVVA 760
                 3333322222334445556663342...333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 5281.91
//
Query:       KIR64752.1  [L=180]
Description: hypothetical protein TK50_03825 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1213.26
//
Query:       KIR64753.1  [L=209]
Description: hypothetical protein TK50_03830 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1532.87
//
Query:       KIR64754.1  [L=942]
Description: DNA topoisomerase I [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   5.6e-119  397.8   0.0   5.6e-119  397.8   0.0    1.6  2  Topoisom_bac  DNA topoisomerase
    4.3e-65  215.6   1.1    4.7e-18   64.9   0.1    4.7  4  Toprim_C_rpt  Topoisomerase C-terminal repeat
    8.9e-27   93.3   0.0    1.9e-26   92.3   0.0    1.6  1  Toprim        Toprim domain
    0.00013   22.4   1.1    0.00053   20.4   0.0    2.5  2  Toprim_4      Toprim domain
  ------ inclusion threshold ------
       0.01   15.7   1.8       0.23   11.4   0.1    3.8  4  MarR_2        MarR family
      0.026   13.9   0.0      0.026   13.9   0.0    2.0  2  SBP_bac_3     Bacterial extracellular solute-binding proteins
       0.12   12.8   0.0       0.52   10.8   0.0    2.1  2  Toprim_2      Toprim-like


Domain annotation for each model (and alignments):
>> Topoisom_bac  DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.8   0.0  2.2e-122  5.6e-119       1     412 [.     145     590 ..     145     591 .. 0.92
   2 ?   -6.8   4.2         7   1.8e+04      86     106 ..     896     916 ..     874     939 .. 0.41

  Alignments for each domain:
  == domain 1  score: 397.8 bits;  conditional E-value: 2.2e-122
  Topoisom_bac   1 einenlvdaaeaRrelDwliGinlsrlltkklkgkkvlsaGRVqtptLaliveRereienFvpeeyweveatlkkekkeke................ 81 
                   ei+++lvda+eaRr+lD+l+G+++s++l+kk++    lsaGRVq+++ +++veRer++ +F+ +eyw++ atl+ +   +                 
    KIR64754.1 145 EIDRDLVDAQEARRILDRLYGYEVSPVLWKKVM--PKLSAGRVQSVATRIVVERERQRMAFRTAEYWDILATLAVARPGEGprtfnatlvalngdri 239
                   5899**************************999..9************************************9666555557899************ PP

  Topoisom_bac  82 ...........kkkkkkkerikdkeeaeaileklkkkeakvesvekkekkkppplpfdtttLqkeasrklglsakktlsiaqkLYekaglitYpRTd 167
                              +    +   + d+  a+ ++++l+   ++v+ ve+k  +++p  pf t+tLq+ea+rkl++s+++t+++aq+LYe+ g+itY+RTd
    KIR64754.1 240 atgkdfepttgRVRPGAGVVHLDEGGARGLAARLQGRPFTVTRVEEKPYRRRPYAPFITSTLQQEAARKLRFSSQQTMRTAQRLYEN-GYITYMRTD 335
                   ***99999988777778888999***********7779*************9999*******************************7.********* PP

  Topoisom_bac 168 strlseeaelkailealakkygkeylefaekllkktkkksvvknkkveaHeAIrPteelp.kl....kelsddekklYelIvrrflaslmkdakyee 259
                   s +lse+a ++a+++++ + yg++  +  ++ ++ +k    vkn++ eaHeAIrP ++   +      els++e klYelI+rr++as+m+da+ ++
    KIR64754.1 336 SVNLSETA-IAAARRQIVELYGERSVPPEPRRYT-GK----VKNAQ-EAHEAIRPAGDNFrTPgevaRELSGEEFKLYELIWRRTIASQMTDAVGSS 425
                   ********.9*************99999999887.55....56999.**********99853355668888************************** PP

  Topoisom_bac 260 ttvklev.....eeeefkasgktilekGfkkvykeekkeeeee......elpelkegeevkvkeveleekkTkppkryteasLikamekagiGtpaT 345
                   ++v++++     ee  f a+gkti+++Gf+++y e++++e+ e      +lp+l +++ ++ +e++ + + T+pp+ryteasL+ka+e+ giG+p+T
    KIR64754.1 426 VSVRIRAvssasEEADFGATGKTITDPGFLRAYVESSDDENAEaedaerRLPNLVKDQPLTADELAAQGHHTQPPSRYTEASLVKALEELGIGRPST 522
                   *****6667778999******************5444444433567888************************************************ PP

  Topoisom_bac 346 raeiieklvergYverkkkslvptelGkalvellekf.kdlvspelTaeleekLdeIaegkadakevl 412
                   +a+i++++++rgYv +++++l+p+ l++a++ lle+  ++lv++++Ta++e++LdeIa g   a ++l
    KIR64754.1 523 YASIMQTIQDRGYVSKRGQALIPSFLAFAVIGLLERHyPRLVDYNFTASMENELDEIAGGDHAAVDFL 590
                   ****************88****************6666**********************99999887 PP

  == domain 2  score: -6.8 bits;  conditional E-value: 7
  Topoisom_bac  86 kkkerikdkeeaeaileklkk 106
                   +kk++ k+ + a++  ++ k+
    KIR64754.1 896 AKKTTAKKTTTAKKTTAATKT 916
                   222222222222222222222 PP

>> Toprim_C_rpt  Topoisomerase C-terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   3.2e-10   8.2e-07       3      45 ..     637     697 ..     636     699 .. 0.84
   2 !   57.4   0.0     4e-19     1e-15       1      51 [.     710     760 ..     710     765 .. 0.96
   3 !   59.5   0.0   9.3e-20   2.4e-16       4      55 ..     766     817 ..     764     818 .. 0.94
   4 !   64.9   0.1   1.8e-21   4.7e-18       1      53 [.     829     881 ..     829     884 .. 0.96

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 3.2e-10
  Toprim_C_rpt   3 etgepikvkeGRfGPYvkhgk..................knasLpkgddvetitleeAlel 45 
                   ++g++++v+ GR+GPY++ g                   ++a++p+g  ++++t e+  el
    KIR64754.1 637 DEGREVVVRVGRYGPYLQRGVpgeepaahgegeeggaqgDRAPIPEGLAPDELTPEKVHEL 697
                   579***************943455666666677888888****************998887 PP

  == domain 2  score: 57.4 bits;  conditional E-value: 4e-19
  Toprim_C_rpt   1 hPetgepikvkeGRfGPYvkhgkknasLpkgddvetitleeAlellaekra 51 
                   +P tgepi +k+GRfGPYv  g++  sL ++++++++tleeAl+ll+++r 
    KIR64754.1 710 DPSTGEPILLKSGRFGPYVASGERKSSLLRTQSPDSLTLEEALKLLSLPRL 760
                   8************************************************95 PP

  == domain 3  score: 59.5 bits;  conditional E-value: 9.3e-20
  Toprim_C_rpt   4 tgepikvkeGRfGPYvkhgkknasLpkgddvetitleeAlellaekralgkk 55 
                   +g ++ +++GR+GPYvk g  ++sL ++d+++t+tl+eAl+lla++++++++
    KIR64754.1 766 DGVEVFANNGRYGPYVKRGDEFRSLDSEDKMFTVTLDEALALLAAPKTRQRR 817
                   799********************************************88765 PP

  == domain 4  score: 64.9 bits;  conditional E-value: 1.8e-21
  Toprim_C_rpt   1 hPetgepikvkeGRfGPYvkhgkknasLpkgddvetitleeAlellaekralg 53 
                   +P t++p ++k+GRfGPYv++g+ nasL++g+++e++t eeA e+laekra+g
    KIR64754.1 829 DPLTEKPLVIKDGRFGPYVTDGEFNASLRRGQTPEALTVEEASEMLAEKRAKG 881
                   8*************************************************987 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   7.3e-30   1.9e-26       2     103 .]      10     131 ..       9     131 .. 0.91

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 7.3e-30
                 EEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHS.......................TTEEEEEECTTTHHHHHHHHHHHHHHSEEEEECSSSHHHH CS
      Toprim   2 lvivEgpsdaktiakalgsgfqavtaslGhildlet.......................efkpvyeeiedkkkvlkalkelakradeiilatDpDreGe 77 
                 lvivE+p++akti+ +lg  +++v as Gh++dl+                         f + y + +d +++++ l +lak++dei+latD DreGe
  KIR64754.1  10 LVIVESPAKAKTISGYLG-PGYVVEASFGHVRDLPRnaadvpakykgepwarlgvdvdnGFHALYVVSPDRRQQISKLVKLAKEVDEIFLATDEDREGE 107
                 9*****************.9*******************888877777777777777777777777********************************* PP

                 HHHHHHHHHHTHHHTTTEEEEEESSS CS
      Toprim  78 aiawellevlkellenkigrvefsei 103
                 aiaw+l+e lk+ ++   +r++f+ei
  KIR64754.1 108 AIAWHLVETLKPKVPV--KRMVFHEI 131
                 *******999976666..******98 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.1e-07   0.00053      34      87 ..      72     125 ..      63     127 .. 0.85
   2 ?   -1.7   0.4       1.6   4.1e+03      35      76 ..     886     929 ..     882     939 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.1e-07
    Toprim_4  34 ldgirpeklkt.enlveaekkvkevilaldgDaeGeataerlaellleegvkvtr 87 
                 l  ++p+++ +  +lv+  k+v+e+ la+d D eGea a +l+e+l +++v v+r
  KIR64754.1  72 LYVVSPDRRQQiSKLVKLAKEVDEIFLATDEDREGEAIAWHLVETL-KPKVPVKR 125
                 567888888887888889999***********************76.78888877 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.6
    Toprim_4  35 dgirpeklktenlve..aekkvkevilaldgDaeGeataerlae 76 
                 ++++ +k +  ++++  ++ ++k+ + a+  +a+ + ta + a 
  KIR64754.1 886 KKAAAKKAPAAKKTTakKTTTAKKTTAATKTTAAAKSTATKKAT 929
                 56666666663333357788889999999999999999988665 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   9.1e-05      0.23      23      54 ..     301     332 ..     288     349 .. 0.88
   2 ?   -2.6   0.0       2.1   5.3e+03      22      31 ..     388     398 ..     380     399 .. 0.71
   3 ?    0.5   0.0      0.23   5.9e+02      17      35 ..     482     498 ..     471     503 .. 0.79
   4 ?   -2.9   0.0       2.6   6.6e+03      36      54 ..     521     539 ..     506     541 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.1e-05
                 EHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2  23 tvgelarrlglsksavsrilkrLvaaGLverr 54 
                  ++e ar+l+ s + + r+ +rL + G++++ 
  KIR64754.1 301 LQQEAARKLRFSSQQTMRTAQRLYENGYITYM 332
                 589**************************865 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.1
                 E.EHHHHHHHH CS
      MarR_2  22 l.tvgelarrl 31 
                 + t+ge+ar+l
  KIR64754.1 388 FrTPGEVAREL 398
                 449******98 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.23
                 TTTSEEEHHHHHHHHTSSH CS
      MarR_2  17 rpgrdltvgelarrlglsk 35 
                   +  lt+ ela+  ++++
  KIR64754.1 482 DQP--LTADELAAQGHHTQ 498
                 334..9********99987 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHHTTSEEEE CS
      MarR_2  36 savsrilkrLvaaGLverr 54 
                 s+   i +  +++G+v +r
  KIR64754.1 521 STYASIMQTIQDRGYVSKR 539
                 6666677778888888765 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     1e-05     0.026      29     117 ..     156     243 ..     151     249 .. 0.83
   2 ?   -3.8   2.2       2.8   7.1e+03     106     122 ..     904     920 ..     866     936 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1e-05
                 HHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEE.TTSHGTCCHSSCGCGTTSEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  29 akaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrk.kdaskissiksladLkgkkvgvqa 117
                 a+ i +rl + +e+ pv w+ ++p+l +g+v  +++ i +  eR+     +  y++   +l+v + ++  ++ +  +l  L+g ++++ +
  KIR64754.1 156 ARRILDRL-YGYEVSPVLWKKVMPKLSAGRVQSVATRIVVERERQRMAFRTAEYWDILATLAVARpGEGPRTFNA-TLVALNGDRIATGK 243
                 67788888.567788889**************************998888999****999999987765544444.46689999999876 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.8
                 GCGTTSEEEEETTSHHH CS
                 xxxxxxxxxxxxxxxxx RF
   SBP_bac_3 106 adLkgkkvgvqagstae 122
                    + k++++++ ++a+
  KIR64754.1 904 TTTAKKTTAATKTTAAA 920
                 11122222222222222 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0002      0.52      39      73 ..      89     121 ..      67     135 .. 0.73
   2 ?   -3.8   0.0         7   1.8e+04      24      52 ..     607     636 ..     586     644 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
    Toprim_2  39 lerypekkvvlalDnDkaGrkaakrlaellreagv 73 
                 l+++  ++++la+D+D+ G++ a  l+e l+ ++v
  KIR64754.1  89 LAKE-VDEIFLATDEDREGEAIAWHLVETLK-PKV 121
                 2222.488*******************9995.443 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 7
    Toprim_2  24 valgGt.alteaalkllerypekkvvlalD 52 
                   +gG  +l  ++l+++++++ + + l++D
  KIR64754.1 607 ARSGGLkKLVTENLSEIDARSVNSIPLHTD 636
                 445555667777777777776676777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (942 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1237  (0.0689944); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.42
# Mc/sec: 6667.33
//
Query:       KIR64755.1  [L=438]
Description: FAD-linked oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-72  244.2   0.0    2.4e-72  243.9   0.0    1.1  1  ALO            D-arabinono-1,4-lactone oxidase
    1.4e-27   96.1   1.3      2e-27   95.6   1.3    1.2  1  FAD_binding_4  FAD binding domain
  ------ inclusion threshold ------
      0.076   12.7   0.0       0.18   11.5   0.0    1.6  1  HTH_53         Zap  helix turn helix N-terminal domain


Domain annotation for each model (and alignments):
>> ALO  D-arabinono-1,4-lactone oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.9   0.0     4e-76   2.4e-72       1     258 [.     181     433 ..     181     435 .. 0.98

  Alignments for each domain:
  == domain 1  score: 243.9 bits;  conditional E-value: 4e-76
         ALO   1 vtlrvvpaftlkskqevikfetllenwdellkssefirvwwfPytekavvwrankteepe..eskprkslkdellgrlvyeallalsrifpsltplver 97 
                 vtlrvv+af l++++++ +++++l+++ +l+ ++++++++wfPyt+++++++++++  ++    ++r++l+d++l+++v+  l++l+r+ p l+p ++ 
  KIR64755.1 181 VTLRVVDAFVLRAHERPAALDDVLADLPSLIAAHDHAEFFWFPYTDRVQLKTNDRVPADDrpLPRWRAWLDDDFLSNTVFAGLCRLGRAAPGLVPAINA 279
                 8*******************************************************999888899********************************** PP

         ALO  98 fvfklqygkgdeavqdsyevfnmdclvsqfvnEwaiplekgpevLrelkaliekaaelkvhfPievRcsnadrplLsvtndrdtlyinatmYrpfetnv 196
                  +++++++  ++++++s +vf+++++v+++++E+++p+  +pe+L e++ ++++   +kv fP+evR+++ad+++Ls  ++rd++yi++++Y +     
  KIR64755.1 280 ASARALSE--RTYTGRSDAVFCTPRRVRFMEMEYGLPRAALPEALAEVRRIVDRLP-FKVQFPVEVRFTAADDIWLSHGYGRDSAYIAVHQYVGAP--- 372
                 ********..**********************************************.************************************999... PP

         ALO 197 ptekyfkafedimkkagGrPHWaKnflltaedlkelYpdlkkflkvRkklDPegvFlnewle 258
                  +e+yf+a+e++ + +gGrPHW+K +  +ae l+ +Yp++ +f+++R++lDP++vF +++l+
  KIR64755.1 373 -YEPYFRAVEEVAAGLGGRPHWGKLHWRDAESLAPAYPKFADFRSLRHRLDPQRVFGSPHLT 433
                 .*******************************************************998875 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   1.3   3.4e-31     2e-27       4     139 .]      25     157 ..      22     157 .. 0.97

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 3.4e-31
                    EEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCGSB CS
  FAD_binding_4   4 vvrpeseeevaaalrlaneaglpvlvrGgGssllgqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgipgt 99 
                    ++rp+++++v aa+++a++ag +++++G+G+s++  a+  +g  + l+ l++ + +d++++ +tv aG +l++l++ la +gl+l+ + g+++ +t
     KIR64755.1  25 ILRPRTIADVTAAVQAAADAGERIRPVGSGHSFTAVAC-ADGHRMELTDLDTEIRVDRDRRLVTVPAGMPLHRLNALLAGHGLALP-NLGDIDAQT 118
                    789*******************************9998.9*********************************************9.9******** PP

                    HHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEEE CS
  FAD_binding_4 100 vGGaiatnagGygsekyGlirdnvlglevvladGevvrls 139
                    v+Gai+t+++G +   yG ++ +v+ l++v+++Gev+r+s
     KIR64755.1 119 VAGAISTGTHG-TGAAYGCLSTFVEALTLVTGTGEVLRCS 157
                    ***********.77789*********************97 PP

>> HTH_53  Zap  helix turn helix N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     3e-05      0.18       7      28 ..      58      79 ..      55      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3e-05
      HTH_53  7 TkiLCAhGGrmaLeeLlgeveL 28
                T + CA G rm+L +L  e+  
  KIR64755.1 58 TAVACADGHRMELTDLDTEIRV 79
                8999**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 2718.71
//
Query:       KIR64756.1  [L=402]
Description: alanine racemase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-13   51.2   0.2    2.1e-13   50.4   0.2    1.3  1  Ala_racemase_N  Alanine racemase, N-terminal domain
  ------ inclusion threshold ------
      0.097   12.6   0.0        0.2   11.5   0.0    1.5  1  ADH_N           Alcohol dehydrogenase GroES-like domain


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.2   2.3e-17   2.1e-13       1     217 [.      26     276 ..      26     277 .. 0.84

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 2.3e-17
                     EEHHHHHHHHHHHHHHSCTTSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTSCSEEEEESC.STGGGHHHHHH.....TT CS
  Ala_racemase_N   1 idldalrhNlrrlralagpgaklmavvKanayghgavevaralaeggadgfgvatleEalelreagitapilvleg.fspeelaalae.....yd 89 
                     +dl+a+++N ++l ++a +g+ +++ +K+      + +v+    + g +g++ +tl Ea  l +ag+t + lv  +  ++  la+la+       
      KIR64756.1  26 VDLAAFDANAAALPTRA-GGKPIRVASKSVRSRELLRRVLG---RPGWRGVMAFTLPEASWLVRAGVTDDALVAYPtADRGALAELAAdeglaGA 116
                     79***************.5556*******555555555555...346*****************************7788899988888999669 PP

                     EEEEESSHHHHHHHHHHHHH.TTS-EEEEEEBESSSSSSS...........BSC.HHHHHHHHHHHHTTTEEEEEEE-S-SST............ CS
  Ala_racemase_N  90 ltvtvdsleqlealaaaare.agkplrvhlkidtgmgRlG...........ftp.eeleellealaalpglrleglmtHfasa............ 159
                     +t++vd  +ql+ ++a+     +  lrv++ +d +   lG           ++   ++ +l++a+aa pg+rl+glm++ a              
      KIR64756.1 117 VTLMVDGTDQLDLVDAVCPPgRRPALRVCIDLDASWRPLGrrvhvgvrrspVHSaRAAGALAAAIAARPGFRLVGLMSYEAQIaglgdappgraa 211
                     *****************998667779*********99777777777888888887889************************88***99999988 PP

                     ......TSTS.HHHHHHHHHHHHHHHHHHHTTGGGSEEEEESHHHHHHSGGG..TTEEEESGGGGT- CS
  Ala_racemase_N 160 ......depd.eeteaqlarfeealeelekaglrppvvslanSaaillaaah..fdmvRpGialyGl 217
                           ++ +   +++ lar  +a+++++ ++ + ++v+ ++++ + + +a   +++v +G+ lyG 
      KIR64756.1 212 laaairAA-QrGSYRELLARRGAAVSAVR-EHADLEFVNGGGTGSVAATSADpaVTEVTAGSGLYGP 276
                     88776422.23456667777788888887.567778999999999999953345***********96 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.3e-05       0.2      34      73 ..     335     376 ..     321     383 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.3e-05
                 E---EEEEEEEE..ESTT-CS--TT-EEEE-SEEE-SSSHHH CS
       ADH_N  34 ilGHEivGevee..vgpevkklkvGdrVvvepliscgeCaaC 73 
                  lG E +Gev+   +gp+  +l+vGdrV   ++ + + C++ 
  KIR64756.1 335 LLGAEGAGEVQTplTGPAAAGLRVGDRVWFRHAKAGELCERV 376
                 58*********9889***************999888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2989.04
//
Query:       KIR64757.1  [L=109]
Description: hypothetical protein TK50_03870 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-08   32.2   0.1    1.2e-07   31.8   0.1    1.3  1  YbaB_DNA_bd     YbaB/EbfC DNA-binding family
  ------ inclusion threshold ------
      0.053   13.6   1.2      0.053   13.6   1.2    1.7  2  Unstab_antitox  Putative addiction module component


Domain annotation for each model (and alignments):
>> YbaB_DNA_bd  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   1.4e-11   1.2e-07      11      81 ..      25      94 ..       6     103 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.4e-11
                 HHHHHHHHTTSEEEEEETTTTEEEEEETT--EEEEEE-GGGG...GS-HHHHHHHHHHHHHHHHHHHHHHHHH CS
  YbaB_DNA_bd 11 meeaqeelaekevegssggglVkVtvngkgevksikIdpslld..pedkemLedlivaAvndAlkkaeeeaee 81
                  +e  + +a+ ev++ s +glV+V v+++g+++++++   l +   +d   ++  + aAv +A ++a+ + e+
   KIR64757.1 25 QAEFDQAVATVEVTVRSPDGLVEVAVTADGRITDVRFLGPLHQrhHRD---VAASVRAAVAAAADAAQWAREK 94
                 4577888999***************************88885435555...7777777777777777655554 PP

>> Unstab_antitox  Putative addiction module component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.2   5.9e-06     0.053      25      46 ..       5      26 ..       2      31 .. 0.86
   2 ?   -2.4   0.1      0.56     5e+03      24      32 ..      85      93 ..      72      97 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.9e-06
  Unstab_antitox 25 elpaawkaElerRlaeyeaGkv 46
                    e+++aw +E+ rR++++ea ++
      KIR64757.1  5 EIDEAWIEEAVRRYRRIEALQA 26
                    7****************98555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.56
  Unstab_antitox 24 pelpaawka 32
                     +  ++ ++
      KIR64757.1 85 ADAAQWARE 93
                    344555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 834.99
//
Query:       KIR64758.1  [L=101]
Description: hypothetical protein TK50_03875 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00024   21.5   7.5    0.00058   20.3   7.5    1.6  1  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d


Domain annotation for each model (and alignments):
>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   7.5   3.3e-08   0.00058      10      99 ..       2      98 ..       1      99 [. 0.81

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.3e-08
  T7SS_ESX_EspC 10 dhlrelaakhdevaaeiasavaaaaga.......saavldshGpicaatndavaaaeaarraagealaaasteLadkLraAAaaYeatDeeaagald 99
                   d+lr+laa++de+ a+++++++a++ +       +a+v    G i+ a++   ++a  +r+++++  a  ++  a  +r+AA++Y+ +D++  ++l+
     KIR64758.1  2 DELRALAARLDEAGATLEALARAVTATdpphpafGAHVPGRPGEIGRALHRRWTDATGDRAREATVAASRLAAAASAVRTAADRYSGVDDAVRRRLG 98
                   567777777777777777666666322122222268899999************************************************9998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 722.97
//
Query:       KIR64759.1  [L=225]
Description: hypothetical protein TK50_03880 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1654.98
//
Query:       KIR64760.1  [L=279]
Description: hypothetical protein TK50_03885 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-17   62.4   0.0    5.5e-17   61.8   0.0    1.3  1  PSP1       PSP1 C-terminal conserved region
  ------ inclusion threshold ------
      0.036   14.5   0.0      0.064   13.7   0.0    1.3  1  OAM_dimer  Dimerisation domain of d-ornithine 4,5-aminomutase
       0.12   12.6   0.0       0.58   10.4   0.0    2.0  2  HupF_HypC  HupF/HypC family


Domain annotation for each model (and alignments):
>> PSP1  PSP1 C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   9.2e-21   5.5e-17       5      85 ..      63     148 ..      59     149 .. 0.91

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 9.2e-21
        PSP1   5 rlatpedvstnlenkqdeekalhiaqeklkelnlnmklldaefq.....fdrkkltfyYvaeervDFreLvkeLfkfyktRIwLca 85 
                  lat++d+++ + +++++++a   a++ ++e++l+mk++ ++         + + t+y++a++rvDFr+Lv++L +++++R++L++
  KIR64760.1  63 GLATDDDLRRDELLRRRKAEAKVAAKRLIREHGLPMKVVAVDHVlatadGGGDRTTVYFTAPHRVDFRSLVRDLGATLHCRVELRQ 148
                 68**************************************99874443334689******************************98 PP

>> OAM_dimer  Dimerisation domain of d-ornithine 4,5-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.1e-05     0.064      25      74 ..      80     132 ..      75     134 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
                 CHHHHHHHHHHHHCTTSEEEEEEEEEEEET...TEEEEEEEEE--S-EEGGG- CS
   OAM_dimer  25 eeeAeeAAlelakkmGledpeVvhkeelhe...eftffvvyGkvshsvdlsel 74 
                 ++eA+ AA++l++++Gl    V+  ++l +   ++ +  vy  ++h+vd+ +l
  KIR64760.1  80 KAEAKVAAKRLIREHGLPMKVVAVDHVLATadgGGDRTTVYFTAPHRVDFRSL 132
                 789**************9999998888876545678*************9987 PP

>> HupF_HypC  HupF/HypC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.42   2.5e+03      36      44 ..      25      33 ..      17      36 .. 0.86
   2 ?   10.4   0.0   9.7e-05      0.58       4      29 ..      95     120 ..      94     127 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.42
                B-TT-EEEE CS
   HupF_HypC 36 vkvGdyVLv 44
                ++vGd VLv
  KIR64760.1 25 PQVGDRVLV 33
                689*****9 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 9.7e-05
                 EEEEEEEEEETTEEEEECTTEEEEEE CS
   HupF_HypC   4 aiPgkvveiedelAlvdvgGvrrevs 29 
                 ++P+kvv+++  lA++d gG r +v 
  KIR64760.1  95 GLPMKVVAVDHVLATADGGGDRTTVY 120
                 89*******************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1995.26
//
Query:       KIR64761.1  [L=584]
Description: metallophosphoesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0078   16.7   0.0      0.015   15.8   0.0    1.5  1  Metallophos    Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
        1.3    8.4   5.0        0.3   10.5   0.4    2.0  2  ABC2_membrane  ABC-2 type transporter


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.6e-06     0.015       6     203 ..      99     301 ..      94     302 .. 0.45

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.6e-06
                  EESBTBTTCCTHHHHHHHHHHHH.........HHHTTESEEEEESTSSSSS....HHHHHHHHHHHHHHHH....TSEEEEEC-TTSCHHHHHHHHHH CS
  Metallophos   6 igDlHlalgggqlddllkllddl.........lreekpdlvllaGDlvdrg....dlekellellaalvky....pipvylllGNHegfeeellnkyg 86 
                  ++Dl+      ++d++  +   l         +r +++  +++ GD v+ +     +e ++   ++a ++     +  +++++GNH+ ++++l  + +
   KIR64761.1  99 VADLG-----DGFDATYSVAYLLaqpeltvdgHRLPRAQTLVMGGDQVYPSasyeAYEDRCKGPYQAALPVtppeRPTLFAVPGNHD-WYDGLTAFLR 190
                  56777.....5555555444222222223333344789999*****888886566333333333222222245543467********.6666655555 PP

                  HHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEE.THHHHHHHHHHHSCHHHHCCHHHHHH........HHHHTTCSEEEEEESSESSCSS CS
  Metallophos  87 ylgifsepwrsdaevfnnlplaslgsgslkvlllhGgspel.lvsldklgslnleleapepgdewlkd........lekrekadwvivlgHsplyrgs 175
                   + +        +  f+++   +      + +++   ++++ l  ld++ +  l++++ +   +  ++          +     wv ++ H   y  s
   KIR64761.1 191 LFVRS--R----DRHFGGWGTGQ---S--RSYFAVELPADWwLLGLDDQSGSYLDDPQLTY-FDTVAKrlgpdsrvILAVPAPTWVKAVDHPTAY-DS 275
                  44432..1....22223333322...2..33344443344444444444444444443333.222222222223333333444444444444444.55 PP

                  SCSCCHHHHHHHHHHTTESEEEEESSSS CS
  Metallophos 176 gylfgdealedllkkygvdlvisGHtHv 203
                   ++f +  ++      +v l +sG+ H+
   KIR64761.1 276 IDYFIRTIVA--PTGARVRLLVSGDLHH 301
                  5555555555..3344466666666665 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   3.3e-05       0.3      15      68 ..     375     429 ..     371     441 .. 0.84
   2 ?   -0.9   0.4       0.1   9.3e+02     101     149 ..     444     503 ..     440     515 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.3e-05
  ABC2_membrane  15 wrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsal 68 
                     r+p  g l+ ++++ll++ + g++ g++g +++  l+ p + + +v++l+ +++
     KIR64761.1 375 RRNPGFGTLLGTVHTLLMLAMAGVAAGRAGgTEQRLLSVPLVAMLLVTMLGAVFF 429
                    599999************************5555555999999999999984444 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.1
  ABC2_membrane 101 vlvelpvsllqalifllivyflvgldls...........rfflflllllltalaasslgl 149
                    +++ ++++l+q+++  + ++ +++++l            ++++ +l+ +l++ ++ ++ l
     KIR64761.1 444 WILGVTHGLAQVALAAAGTWAWLSVPLHdwpwplpvaaaAVVYGPLIGFLSTELVAAYLL 503
                    677788888888888886666666665533322333332224444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3893.69
//
Query:       KIR64762.1  [L=139]
Description: hypothetical protein TK50_03900 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0076   16.0   2.2      0.062   13.0   0.2    2.1  2  Neurensin  Neurensin
  ------ inclusion threshold ------
      0.035   14.2   0.0      0.062   13.4   0.0    1.3  1  CrgA       Cell division protein CrgA
       0.11   11.3   0.2       0.15   10.8   0.2    1.2  1  Herpes_gE  Alphaherpesvirus glycoprotein E
          2    8.9   7.3       0.45   11.0   2.8    2.0  2  DUF3357    Domain of unknown function (DUF3357)


Domain annotation for each model (and alignments):
>> Neurensin  Neurensin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.2     0.016        71      42      65 ..      45      68 ..      15      80 .. 0.69
   2 !   13.0   0.2   1.4e-05     0.062      36      68 ..     100     132 ..      74     136 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.016
   Neurensin 42 kvslvvgtlvlllGvtallvGylv 65
                 v+++ + l l +Gv  ll + l+
  KIR64762.1 45 PVAMSRSRLALSVGVLLLLASCLL 68
                466666666666666666666555 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.4e-05
   Neurensin  36 sesllwkvslvvgtlvlllGvtallvGylvprr 68 
                       +v++vv+  + llG++al++ y++ rr
  KIR64762.1 100 AAERRLAVCVVVAAALALLGLAALVLAYVWRRR 132
                 44455679**********************998 PP

>> CrgA  Cell division protein CrgA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.4e-05     0.062      17      57 ..      91     131 ..      81     137 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
        CrgA  17 aertpvkakaakpsprwyvpvmlglmllGllwlvvyYlage 57 
                  ++++++++aa++   + v+v  +l llGl+ lv+ Y+ + 
  KIR64762.1  91 LQQHAANVAAAERRLAVCVVVAAALALLGLAALVLAYVWRR 131
                 455556666777788888999999*************9876 PP

>> Herpes_gE  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   3.3e-05      0.15     330     376 ..      87     133 ..      79     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   Herpes_gE 330 kskeiappnngtsraalllaavliaalllvllglsalvcltkrrrrk 376
                  ++  +++ +  + a+++la  ++ a+ l+llgl alv    +rrr+
  KIR64762.1  87 TPEMLQQHAANVAAAERRLAVCVVVAAALALLGLAALVLAYVWRRRR 133
                 5677788888899999*****************************97 PP

>> DUF3357  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.11     5e+02      21      54 ..      52      88 ..      33      98 .. 0.61
   2 ?   11.0   2.8    0.0001      0.45       6      42 ..      88     126 ..      80     137 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.11
     DUF3357 21 r...pllaavliasalvvlvvlvalagvrlagqaslv 54
                r   ++ +++l+as l+  + l+ +ag  l  q+ ++
  KIR64762.1 52 RlalSVGVLLLLASCLLPCLPLLQVAGTSLPYQDPTP 88
                3344566666666666666666666666555555444 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0001
     DUF3357   6 Peddea..aaaaaararrpllaavliasalvvlvvlval 42 
                 Pe  ++  a+ aaa++r +++++v++a al+ l++lv +
  KIR64762.1  88 PEMLQQhaANVAAAERRLAVCVVVAAALALLGLAALVLA 126
                 5544443234444444449************99999544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 936.32
//
Query:       KIR64763.1  [L=307]
Description: hypothetical protein TK50_03905 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2150.29
//
Query:       KIR64764.1  [L=104]
Description: hypothetical protein TK50_03910 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.001   19.2   0.5     0.0013   18.8   0.5    1.1  1  T2SSM           Type II secretion system (T2SS), protein M
     0.0023   18.5   3.2      0.077   13.5   0.3    1.9  2  T3SSipB         Type III cell invasion protein SipB
  ------ inclusion threshold ------
      0.015   14.7   3.2      0.017   14.5   3.2    1.1  1  DUF4407         Domain of unknown function (DUF4407)
      0.018   14.6   4.4      0.022   14.3   4.4    1.0  1  Filament        Intermediate filament protein
       0.03   13.7   7.0      0.034   13.5   7.0    1.0  1  Tropomyosin     Tropomyosin
       0.03   12.8   0.8      0.034   12.6   0.8    1.0  1  Borrelia_P83    Borrelia P83/100 protein
      0.031   12.9   0.9      0.035   12.8   0.9    1.0  1  AAA_13          AAA domain
      0.039   14.5   4.3      0.045   14.3   4.3    1.0  1  APG6_N          Apg6 coiled-coil region
       0.32   11.2   4.4       0.47   10.7   0.9    2.3  3  XhlA            Haemolysin XhlA
        1.1    6.6   8.3        1.4    6.4   8.3    1.0  1  DUF3584         Protein of unknown function (DUF3584)
          2    8.9  14.6         13    6.3  14.6    1.9  1  Alanine_zipper  Alanine-zipper, major outer membrane lipoprot


Domain annotation for each model (and alignments):
>> T2SSM  Type II secretion system (T2SS), protein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.5     8e-07    0.0013      21     106 ..      16     100 ..      13     102 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 8e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HHHHHHHHHHHCT--EEEEEEETT CS
       T2SSM  21 alglvlllallylllwqPlserieraqaelqklraqlawveeqaaevralraapasalsgaaleqvvtrsarqagLalarlqpqgd 106
                 ++g +l++++lyll    +++++ + +   ++ ra+ a+v++ aae+r l+  +++  ++++ +++ ++ a++   +l+rl+p ++
  KIR64764.1  16 GAGGLLVMVVLYLLNANRADRKEYQEAIDRAERRADEAEVRRSAAEAR-LDTLQQAVDEARSARRAAEDHADSLLRELTRLRPHEP 100
                 56777888888***********************************99.8878888888899999999999999889999999876 PP

>> T3SSipB  Type III cell invasion protein SipB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   1.6    0.0027       4.4      61      93 ..      35      67 ..      28      70 .. 0.84
   2 !   13.5   0.3   4.8e-05     0.077      59      99 ..      61     101 ..      58     104 .] 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0027
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT- CS
     T3SSipB 61 dleaaiekadqaksaadaatkkvdeaqkrlkeL 93
                d ++ +e++d a+  ad+a+ + ++a +rl+ L
  KIR64764.1 35 DRKEYQEAIDRAERRADEAEVRRSAAEARLDTL 67
                56778999999****************9*9999 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 4.8e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------- CS
     T3SSipB  59 tddleaaiekadqaksaadaatkkvdeaqkrlkeLaPdePe 99 
                    l+  ++++d+a sa  aa+  +d  ++ l  L P eP+
  KIR64764.1  61 EARLDTLQQAVDEARSARRAAEDHADSLLRELTRLRPHEPG 101
                 4556677889999***************************8 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   3.2     1e-05     0.017     188     248 ..      32      93 ..      14      99 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1e-05
     DUF4407 188 kkaqldaaqaelaelkakld.atarlaalraelaeleaerakeraasqaaaaaddGllarle 248
                 ++a+ +++q++++ ++++ d a+ r++a++a+l++l+++ +++r+a +aa++ +d ll +l+
  KIR64764.1  32 NRADRKEYQEAIDRAERRADeAEVRRSAAEARLDTLQQAVDEARSARRAAEDHADSLLRELT 93 
                 45666777777777777766678888999999999999999999999999999999988876 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   4.4   1.4e-05     0.022      75     137 ..      34      96 ..      29      99 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  75 leldnlreeledlrkkyekelnkreevEaelkalrkdldeatlarvdLekkvesLkeelaflk 137
                 +++++ +e++++   + ++   +r+++Ea l +l++ +dea  ar   e + +sL  el  l+
  KIR64764.1  34 ADRKEYQEAIDRAERRADEAEVRRSAAEARLDTLQQAVDEARSARRAAEDHADSLLRELTRLR 96 
                 6788999999999999999999999*********************************99887 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   7.0   2.1e-05     0.034     179     236 ..      37      94 ..      30      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.1e-05
  Tropomyosin 179 rtLeekLkeaeeRaeeAErsvqkLekevdrledeleaekekykaiseeLdqtlaeLee 236
                  ++ +e +  ae Ra+eAE + +  e+ +d+l+++++++++ ++a +++ d+ l eL++
   KIR64764.1  37 KEYQEAIDRAERRADEAEVRRSAAEARLDTLQQAVDEARSARRAAEDHADSLLRELTR 94 
                  567888899*********************************************9986 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.8   2.1e-05     0.034     183     245 ..      25      87 ..      17      98 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
  Borrelia_P83 183 veklredkekdvelrrdivDlkeresqedakraqvlkeeldkkqkdadkakkkadtaednadk 245
                   v  l++ +  d +  ++ +D  er ++e+  r+  ++  ld  q+ +d+a+     aed+ad 
    KIR64764.1  25 VLYLLNANRADRKEYQEAIDRAERRADEAEVRRSAAEARLDTLQQAVDEARSARRAAEDHADS 87 
                   555666666666666666777777776666666666666777777777777766667777665 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.9   2.1e-05     0.035     400     469 ..      25      94 ..      20      99 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.1e-05
      AAA_13 400 elhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLka 469
                  l+l++  +++ +ey+++++++e+ + ++e + +++ea+l +l++ + e +   r  +  a+ + +eL++
  KIR64764.1  25 VLYLLNANRADRKEYQEAIDRAERRADEAEVRRSAAEARLDTLQQAVDEARSARRAAEDHADSLLRELTR 94 
                 5678888999999**************************************************9999987 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   4.3   2.8e-05     0.045      18      87 ..      29      95 ..      20      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.8e-05
      APG6_N 18 leqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaal 87
                l++ +++r++Y+e  ++ +++++e+e     + ++e +l++l+++ +e+ +  +++e++ ++l +el  l
  KIR64764.1 29 LNANRADRKEYQEAIDRAERRADEAEV---RRSAAEARLDTLQQAVDEARSARRAAEDHADSLLRELTRL 95
                677899***************999874...78899999********************999999999876 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.9   6.3e+03      57      65 ..      18      26 ..      15      29 .. 0.53
   2 ?   10.7   0.9   0.00029      0.47      14      46 ..      37      69 ..      25      71 .. 0.90
   3 ?    7.7   0.1    0.0025       4.1       9      44 ..      60      95 ..      55      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.9
        XhlA 57 Galisaviy 65
                G+l+++v+ 
  KIR64764.1 18 GGLLVMVVL 26
                555555543 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00029
        XhlA 14 dnleervdkleekaaeaeekiknleedlkkles 46
                ++++e +d+ e++a+eae +   +e +l+ l++
  KIR64764.1 37 KEYQEAIDRAERRADEAEVRRSAAEARLDTLQQ 69
                789999**********************99986 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0025
        XhlA  9 ietkldnleervdkleekaaeaeekiknleedlkkl 44
                 e++ld+l++ vd+     + ae  +++l  +l +l
  KIR64764.1 60 AEARLDTLQQAVDEARSARRAAEDHADSLLRELTRL 95
                5899**********9999999999999998888776 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   8.3   0.00083       1.4     470     523 ..      36      89 ..      29      98 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00083
     DUF3584 470 ieeadealekaqeelekaeaevealqaeeeqlrkkrdeadealqkaerrleqlr 523
                  +e +ea+++a++++ +ae +++a++a +  l+++ dea  a++ ae+ +  l 
  KIR64764.1  36 RKEYQEAIDRAERRADEAEVRRSAAEARLDTLQQAVDEARSARRAAEDHADSLL 89 
                 455667777777777777777777777777777777777777777776665544 PP

>> Alanine_zipper  Alanine-zipper, major outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  14.6    0.0077        13       2      46 ..      42      86 ..      29      90 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0077
  Alanine_zipper  2 qveelqakadqaeqdaaaaksaadeAkskAdeAaarAenAeaaAe 46
                    ++++++++ad+ae   +aa+++ d+ +++ deA++  ++Ae+ A+
      KIR64764.1 42 AIDRAERRADEAEVRRSAAEARLDTLQQAVDEARSARRAAEDHAD 86
                    567888999999999999999999999999999986666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1923  (0.107256); expected 358.6 (0.02)
Passed bias filter:                     1139  (0.0635284); expected 358.6 (0.02)
Passed Vit filter:                       164  (0.00914719); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 838.09
//
Query:       KIR64765.1  [L=87]
Description: hypothetical protein TK50_03920 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 679.18
//
Query:       KIR64766.1  [L=179]
Description: hypothetical protein TK50_03925 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-10   40.4   1.4    1.6e-08   34.8   1.4    2.2  1  DUF4240   Protein of unknown function (DUF4240)
  ------ inclusion threshold ------
       0.16   12.6   1.2         19    5.9   0.2    2.6  2  ADSL_C    Adenylosuccinate lyase C-terminus


Domain annotation for each model (and alignments):
>> DUF4240  Protein of unknown function (DUF4240)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   1.4   1.8e-12   1.6e-08       3     116 ..      17     142 ..      16     154 .. 0.69

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.8e-12
     DUF4240   3 edeFWaliesareaa......................ggddeevaerleaeL....aklppeeivaFekildellralytwdlwaaaylinggcsddgF 75 
                 e +FWa++e+a e+                        +d +e +++++++L    a+l+ ee+ a +++++++l++l++ d+ a+        sddgF
  KIR64766.1  17 EARFWAMVEAAWERLgpepaalrralrerdpaagdvdPDDLDEWLDPFVDQLralaADLSSEELTALDRVVERKLYDLDRADIHAVT-----DGSDDGF 110
                 556666666665555666666666666666666665544555555555555511115678899999999999999999999987765.....348**** PP

     DUF4240  76 lyfrawliaqGrevyeevladpdsLaelpavedeeeelefe 116
                 ly+r+ ++a Gre+ye+v adp    +         + e+e
  KIR64766.1 111 LYARGHIVALGREFYEAVRADPALAVT---------DAECE 142
                 *********************975554.........44444 PP

>> ADSL_C  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.2    0.0022        19      30      59 ..      25      63 ..      22      65 .. 0.83
   2 ?    5.0   0.0    0.0039        35      33      61 ..     121     149 ..      83     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0022
                HHHHHC.......HHHHHHT-HHHH.C.HHCHHHHHT-G CS
      ADSL_C 30 mkawee.......llelLaadpevk.k.seeeldalfdp 59
                 +awe+       l+ +L++ +  +   ++++ld+ +dp
  KIR64766.1 25 EAAWERlgpepaaLRRALRERDPAAgDvDPDDLDEWLDP 63
                6799999999***999999765555368999*******9 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0039
                 HHCHHHHHHT-HHHHCHHCHHHHHT-GGG CS
      ADSL_C  33 weellelLaadpevkkseeeldalfdpay 61 
                  +e+ e+++adp+++ +++e + ++ + +
  KIR64766.1 121 GREFYEAVRADPALAVTDAECESICYLFA 149
                 33399**********87779999886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1304.40
//
Query:       KIR64767.1  [L=161]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-17   64.4   0.0    1.3e-17   64.1   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    8.1e-11   42.0   0.0      1e-10   41.6   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    2.2e-09   37.6   0.0    2.9e-09   37.2   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    2.6e-09   37.8   0.0    3.2e-09   37.6   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    8.8e-07   29.1   0.1    3.7e-06   27.0   0.1    1.9  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
     0.0015   18.7   0.0     0.0017   18.5   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
      0.002   18.0   0.1     0.0041   17.1   0.1    1.5  1  FR47             FR47-like protein
     0.0025   17.9   0.0     0.0042   17.2   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
       0.21   11.3   0.1       0.22   11.2   0.1    1.2  1  PanZ             Acetyltransferase (GNAT) domain, PanZ


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   6.6e-21   1.3e-17      22     117 .]      38     134 ..      12     134 .. 0.86

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 6.6e-21
                     HHHHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEE.EEETTEHHHHHHHHHT CS
  Acetyltransf_1  22 eefeesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivl.aveedndaairlYekl 115
                      ++ ++ ++++++++va ++++++G++ +  + +  g ++++ s++V+ ++rg+G+G+aL ++++++ar +g+  + + av e+n+aa++ Y++l
      KIR64767.1  38 QAYDIWVERPPGRTVVAVDGDRVLGTAKMGTNRPGPGSHVATASFMVAADARGRGVGTALCRHALDWARGRGYAGMQFnAVAESNRAAVGIYRRL 132
                     336778888999***************88888887899***********************************999555*************88* PP

                     TE CS
  Acetyltransf_1 116 GF 117
                     GF
      KIR64767.1 133 GF 134
                     *9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   5.1e-14     1e-10      20     111 ..      38     139 ..      17     144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 5.1e-14
  Acetyltransf_10  20 ealrerieegealllvaeeggkivGviel.rdgs......hisllfVdpeyrgqGigkaLleaveeeaekdgikl.elt.vnasp.yavpfYek 103
                      +a++ ++e +   ++va +g++++G++++ +++         + ++V+ ++rg+G+g+aL  ++++ a+ +g++  +++ v +s+ +av++Y++
       KIR64767.1  38 QAYDIWVERPPGRTVVAVDGDRVLGTAKMgTNRPgpgshvATASFMVAADARGRGVGTALCRHALDWARGRGYAGmQFNaVAESNrAAVGIYRR 131
                      66667778888899***************666669***5555678**************************999885541444445******** PP

  Acetyltransf_10 104 lGFkavge 111
                      lGF++vg 
       KIR64767.1 132 LGFEVVGT 139
                      ****9975 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.5e-12   2.9e-09       3      75 ..      49     135 ..      38     136 .. 0.71

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.5e-12
                     EEEEEEEETTEEEEEEEEEEES......TCTEE...EEE-GGGTTSSHHHHHHHHTT.....SEEE.EE.EEEE.THHHHHHHHHHTTEE CS
  Acetyltransf_7   3 gevfVaeddgkivGfialslld......aeitr...laVdpeyrgkGiGraLleaae.....kgii.le.qlel.naekaikfYeklGFe 75 
                     g++ Va d+++++G++ +  +               + V+ ++rg+G+G+aL ++a      +g+  ++ ++   ++++a++ Y++lGFe
      KIR64767.1  49 GRTVVAVDGDRVLGTAKMGTNRpgpgshV---AtasFMVAADARGRGVGTALCRHALdwargRGYAgMQfNAVAeSNRAAVGIYRRLGFE 135
                     567789999*****999888889876422...245799****************8224444544333122222223338999*******9 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   1.6e-12   3.2e-09       3     138 .]       2     135 ..       1     135 [. 0.84

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1.6e-12
  Acetyltransf_3   3 lLrplteeDlealfelrsdpevmry.lpepltleeaeewlerawaeeseeegygwaivlkdtgviGsvglrdleeedee..aelgymlapsfwgk 94 
                     l+r++t++D +++ e+++  ev+r+  + +++++ +     ++w e+    g + ++ + +++v+G++ +    + +++  a  ++m+a +++g+
      KIR64767.1   2 LIREFTDTDWPRVWEIVA--EVVRAgDTFTYDPATTAGQAYDIWVERP--PGRT-VVAVDGDRVLGTAKMGTNRPGPGShvATASFMVAADARGR 91 
                     89***********99988..8999855559999999999999998864..4433.333356658***97776666666667************** PP

  Acetyltransf_3  95 GyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     G++t  +r +l++a  +  + + +  ++++N+a + ++++lGfe
      KIR64767.1  92 GVGTALCRHALDWARGRGYAGMQFNAVAESNRAAVGIYRRLGFE 135
                     **************999989999999*****************7 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.1   1.8e-09   3.7e-06       2     127 ..       3     136 ..       2     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.8e-09
                     EEEE-GGGHHHHHHHHHHHTT----H......HHHHHHHHHHTT..SEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-H CS
  Acetyltransf_9   2 irelteedldevlellkyaFqdeespl...e.eireyfrkllee..srvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgv 90 
                     ire t++d++ v e+++++    ++ +     ++ ++++  +e+  +r+++a d++++ g++++     n pG   ++a  ++ +va++ rgrgv
      KIR64767.1   3 IREFTDTDWPRVWEIVAEVVRAGDTFTydpAtTAGQAYDIWVERppGRTVVAVDGDRVLGTAKM---GTNRPGPGSHVAT-ASFMVAADARGRGV 93 
                     89*****************9999998888744677888888885448*************9976...5566775556654.4679********** PP

                     HHHHHHHHHHHHHHTT--.EEEE--.....SSHHHHHTTT-EE CS
  Acetyltransf_9  91 lskLlaraleemreegqp.lsllfP.....ssipiYrrfGyei 127
                      ++L ++al+ +r +g+  + +        ++++iYrr+G+e+
      KIR64767.1  94 GTALCRHALDWARGRGYAgMQFNAVaesnrAAVGIYRRLGFEV 136
                     ***************875266665577787778********98 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   8.6e-07    0.0017       1     142 [.       3     142 ..       3     146 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.6e-07
  Acetyltransf_4   1 iraateeDakeilaiyaeyvvnt..aitfeyevssveefekflealdsekeyvflvaesdrivGyaylgqfkkrakdwkaelsvylaerdnnkeg 93 
                     ir  t  D  +  +i+ae vv+    +t + +  + + ++ + e+   +++ v  v + dr+ G+a++g  ++   ++ a  s+ +a  d++ +g
      KIR64767.1   3 IREFTDTDWPRVWEIVAE-VVRAgdTFTYDPATTAGQAYDIWVERP--PGRTVVAV-DGDRVLGTAKMGTNRPGPGSHVATASFMVA-ADARGRG 92 
                     566677777777777776.443312455555555666666777775..66665444.579*********777745667777777777.89***** PP

  Acetyltransf_4  94 lgrelidaleqvlkeqnienlla.eiaspnensiqfhkalGFelvgifkk 142
                     +g +l  +  + ++  ++  +   ++a +n +++ ++ +lGFe+vg + +
      KIR64767.1  93 VGTALCRHALDWARGRGYAGMQFnAVAESNRAAVGIYRRLGFEVVGTVPG 142
                     ******************99965167889*****************8766 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   2.1e-06    0.0041      28      79 ..      83     136 ..      76     140 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.1e-06
                 EE-GGG-SSSHHHHHHHHHHHHHHHS-S-..EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  28 qvlpehrrrGlgsrlvkalakeiaergkt..vllvvvasNtpsirlyeklGfek 79 
                  v  ++r+rG g+ l +      + rg+    +  v++sN ++  +y +lGfe+
  KIR64767.1  83 MVAADARGRGVGTALCRHALDWARGRGYAgmQFNAVAESNRAAVGIYRRLGFEV 136
                 678899***********99999888999722567899***************97 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.1e-06    0.0042      30      58 ..      82     110 ..      60     112 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.1e-06
  Acetyltransf_CG  30 TeVpeelrGkGiAkkLvkaalddareegl 58 
                        V    rG+G++ +L+++ald+ar +g+
       KIR64767.1  82 FMVAADARGRGVGTALCRHALDWARGRGY 110
                      5788999******************9886 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00011      0.22      42      88 ..      53     103 ..      10     135 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
        PanZ  42 aarFNdRlLgAvkveledk....eaelsdlcVRevTRrRGVgsyLleearr 88 
                 +a   dR Lg +k+ ++        +  +++V +  R RGVg  L  +a++
  KIR64767.1  53 VAVDGDRVLGTAKMGTNRPgpgsHVATASFMVAADARGRGVGTALCRHALD 103
                 56667999999999877533333778899***************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.41u 0.31s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1098.24
//
Query:       KIR64768.1  [L=205]
Description: pyridoxamine 5'-phosphate oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-15   56.3   0.0      4e-15   55.8   0.0    1.2  1  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   2.3e-19     4e-15       4      87 ..      33     123 ..      30     124 .. 0.96

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 2.3e-19
                     HHHHHHHHSSEEEEEEEETTSEEEEEEEEEEEETTT.......TEEEEEEETTSHHHHHHHHH-EEEEEEEETTGSEEEEEEEEEEEESCH CS
  Putative_PNPOx   4 elreflaeskavvlATvdedGrPnvspvllkagdgr.......dgivfatnadsrklrnleenprvallflddelgrgvrieGtaelvsdg 87 
                       r++la+s+++ +AT+++dG  +vsp++ ++g++         ++  ++n++++ ++n+  np+v+l fl ++    +ri+G+a+lv d+
      KIR64768.1  33 RDRQWLAASPFCLVATAGADGACDVSPKGDPPGFALvlddttiAIPERPGNRRADGYHNIVDNPHVGLIFLIPGRTDTLRINGRARLVRDA 123
                     5589************************************99999*******************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1540.61
//
Query:       KIR64769.1  [L=168]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-20   71.2   8.7    1.3e-19   70.5   8.7    1.3  1  DUF2231   Predicted membrane protein (DUF2231)


Domain annotation for each model (and alignments):
>> DUF2231  Predicted membrane protein (DUF2231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   8.7   7.3e-24   1.3e-19       3     104 .]      44     142 ..      42     142 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 7.3e-24
     DUF2231   3 evglwnlvaalvigflaalaGlvelllaepsirakktallHavggvlllalivaltvWrfvlrlreee.qvsplylalslvvvvlllvqgwlGaeLvye 100
                 ev++wn++++l++g+laa+aG ++ll++++ +rak+++l+Ha+ ++++++l++a     +v+rl++e+ ++  + +a+++v++++l++++wlG+eLv +
  KIR64769.1  44 EVAYWNITVGLIGGLLAAAAGAFDLLAIPTGTRAKRVGLTHAAANLAVILLFAA----VWVVRLNAESrAAGGALIAIEVVALAILGASAWLGGELVDR 138
                 89****************************************************....8999999999788899999********************** PP

     DUF2231 101 fgvg 104
                  gvg
  KIR64769.1 139 LGVG 142
                 **97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1229.55
//
Query:       KIR64770.1  [L=199]
Description: heat-shock protein Hsp20 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-15   56.3   0.0    3.4e-15   56.0   0.0    1.1  1  HSP20       Hsp20/alpha crystallin family
    9.2e-08   31.5   0.0    1.4e-07   31.0   0.0    1.3  1  ArsA_HSP20  HSP20-like domain found in ArsA


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   3.8e-19   3.4e-15       4     101 ..      48     142 ..      45     143 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 3.8e-19
                 SSEEEEEEEEE-TT--CCCEEEEEETTEEEEEEE--..---TT----SS---EEEEEE--STTB-TTT-EEEEETTEEEEEEEBSS--..-------- CS
       HSP20   4 eeeeefevkldvpglkkeelkvkvednrvlvkgeheeeeedekglikerssrkFsrkftLPenvdadkvkaslkdGvLtvtvpkkepekkkkerkiqi 101
                 e+ +++ev + +pg+++ee+ v+++d+++ v++  e e + ++g+  + + r F+ ++ LP  vd+d+++a ++ G+L+v +p+  ++   ++r+i +
  KIR64770.1  48 ETADGWEVVVRLPGVAPEEVAVELDDRELCVRARSEAEVNADQGIPGGFETRGFEYRVGLPARVDPDRIDAVMDHGLLRVRLPRAARP---TPRTITV 142
                 67899*******************************9***********************************************9998...7888876 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.5e-11   1.4e-07       2      63 .]      51     129 ..      50     129 .. 0.97

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.5e-11
  ArsA_HSP20   2 deyvlkldLPfvdkeeidlsrsgdeLtIkig..................nfrRqitLPsvlarkevtsAkfedgvLeIrF 63 
                 d+++++++LP+v +ee+ ++ ++ eL +++                    f  ++ LP +++ +++ +A +  g L++r+
  KIR64770.1  51 DGWEVVVRLPGVAPEEVAVELDDRELCVRARseaevnadqgipggfetrGFEYRVGLPARVDPDRI-DAVMDHGLLRVRL 129
                 789******************************************999999999************.***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1488.43
//
Query:       KIR64771.1  [L=636]
Description: rfaE bifunctional protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-23   81.6   5.7    4.9e-10   39.2   6.6    2.5  2  PfkB             pfkB family carbohydrate kinase
    1.8e-15   57.4   0.0    4.1e-15   56.2   0.0    1.6  1  CTP_transf_like  Cytidylyltransferase-like
  ------ inclusion threshold ------
      0.082   13.5   0.3       0.49   11.0   0.1    2.5  2  GAF              GAF domain


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0     1e-13   6.1e-10       4     100 ..      23     123 ..      21     140 .. 0.88
   2 !   39.2   6.6   8.2e-14   4.9e-10     210     298 ..     333     422 ..     317     426 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 1e-13
                 EEEEEEEEEEEEEECSSH.....TTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEE CS
        PfkB   4 vvviGealidliavsekl.....egelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivv 97 
                 v+viG+a+ d +++ e+      ++ +v   + + sa+G +aN+Av++a lg++++++  vG D +G++l + l+ +gv  d+++ +++ +t ++  ++
  KIR64771.1  23 VLVIGDAMLDEWRFAESDrlcreAPAPVLTLRRRISAAGGAANTAVNVAALGGRAVLVAPVGADVAGDELHDCLDRAGV-WDRTVAQPGRHTPVKRRML 120
                 789*****9999999999999987888888899999999999*************************************.6677778888999999888 PP

                 TTT CS
        PfkB  98 ded 100
                  ++
  KIR64771.1 121 AGN 123
                 865 PP

  == domain 2  score: 39.2 bits;  conditional E-value: 8.2e-14
                 HHHHHHH.HTTSSEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSSSTC CS
        PfkB 210 aalhklk.akgaktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvqkkgaias 298
                 a+l +l  ++ga++v vtl  eGa+v   dg ++ +   +v +   +GAGD++ ++++ al++ ++l +a+++a+ +A ++v+ +g+  +
  KIR64771.1 333 ARLAELRaHTGADVVAVTLDTEGAVVGGADGASRRSHSTPVPASHAVGAGDAYLAAMTLALAAAAPLPTAAQLAQLAATITVSDTGTCVC 422
                 444554413577****************88888877778899********************************************9876 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   6.8e-19   4.1e-15       2      93 ..     466     556 ..     465     589 .. 0.94

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 6.8e-19
                      EEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-...SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHHHHHHHTTTTEEEEEEEHH CS
  CTP_transf_like   2 agGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkk...kplasaeeRlemlelakevdevisvdpweltrevlkklkpdklylvigad 92 
                      ++G+FD +H GH r+leqa++l+++ l+v+v+sd ++++ k   +p+ ++e+R++ l ++++vd v+ ++++ +   +++  +pd  + v g+d
       KIR64771.1 466 TNGCFDVLHPGHVRYLEQARALGDL-LVVAVNSDGSVRRLKgpdRPVNPVEDRVALLAALACVDHVVIFEEDSPAG-LIEVVRPD--VYVKGGD 555
                      78***********************.**************669****************************99997.********..9999999 PP

                      H CS
  CTP_transf_like  93 v 93 
                       
       KIR64771.1 556 Y 556
                      6 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.9   1.7e+04      82      96 ..      70      84 ..      50      93 .. 0.71
   2 ?   11.0   0.1   8.2e-05      0.49       1      96 [.     326     443 ..     326     529 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.9
                HHHTTESEEEEEEEE CS
         GAF 82 lenmgirsslvvPlv 96
                +++ g r++lv+P+ 
  KIR64771.1 70 VAALGGRAVLVAPVG 84
                556777888888885 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 8.2e-05
                 SHHHHHHHHHHHHHHHHTESEEEEEEEEETTEEE.CEEEEECC..EEEETTSHHHH.......................HHHHHSSSEEESTGGTSTTH CS
         GAF   1 dleelldtvveelrellgadrvalylpdydGlhy.dipqasrw..lfmkngrgicg.......................qvlatgqplvipdstpdprf 73 
                 d+  l++  ++elr ++gad va+ l d +G  + + + asr   + +++ +  +g                       q ++   +++++d  +  + 
  KIR64771.1 326 DRAVLAEARLAELRAHTGADVVAVTL-DTEGAVVgGADGASRRshSTPVPASHAVGagdaylaamtlalaaaaplptaaQLAQLAATITVSD--TGTCV 421
                 56789999****************99.78884335233333333322222111122233333333333444444444447777777888887..77777 PP

                 HTTHHHHHHHHTTES.EEEEEEEE CS
         GAF  74 aqynrrdllenmgir.sslvvPlv 96 
                 ++  r dll++ g r   ++ P++
  KIR64771.1 422 CR--REDLLRALGARgDDAGHPVL 443
                 77..77777777777555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4489.40
//
Query:       KIR64772.1  [L=183]
Description: peptidase C56 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-51  174.8   0.0    1.3e-51  174.7   0.0    1.0  1  DJ-1_PfpI   DJ-1/PfpI family
    2.3e-05   24.1   0.0    3.2e-05   23.6   0.0    1.3  1  Catalase_C  C-terminal domain found in long catalases
     0.0079   15.9   0.1       0.11   12.2   0.1    2.1  2  MctB        Copper transport outer membrane protein, MctB
  ------ inclusion threshold ------
      0.098   12.4   0.0       0.14   11.9   0.0    1.2  1  GATase      Glutamine amidotransferase class-I


Domain annotation for each model (and alignments):
>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.7   0.0   2.9e-55   1.3e-51       1     165 []       9     177 ..       9     177 .. 0.96

  Alignments for each domain:
  == domain 1  score: 174.7 bits;  conditional E-value: 2.9e-55
                 EEEEEEEETTBEHHHHHHHHHHHHHTTEEEEEEESSTSEEEETTS....EEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT- CS
   DJ-1_PfpI   1 kkvlvlladgvedvElivpvdvlkragikvdvvsvdkeevkgsrG....lkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaekgk 95 
                 k++++l +dgve+vE++ p ++ ++ag + ++vs++ ++++  ++     ++ v++++ d++a++yD lvlpGG a+p+ lr+++ +v +vk f+++gk
  KIR64772.1   9 KRIAFLATDGVEEVEYTRPREAVENAGATAELVSLKPGKIQAFDHldhgGTYDVEVTVADADAGRYDGLVLPGGVANPDFLRTDPDAVRFVKAFFDAGK 107
                 79**********************************99999877655447899999999**************************************** PP

                 EEEEETTTHHHHHHTTTTTTSEE--SGGGHHHHHHTTSEE-SSSEEEETTEEEESSGGGHHHHHHHHHHH CS
   DJ-1_PfpI  96 lvaaICagpqlLaaagvlkgrrvTsypavkdklekagakyvdkrvvvdgnlvTsrgpgaaiefalellee 165
                 +v+ IC+gp++L++a+v++grr+Ts+p+++++l++aga++vd++vv+d+ lv+sr+p+++++f+ +++ee
  KIR64772.1 108 PVGVICHGPWTLVEADVVRGRRITSWPSLRTDLTNAGATWVDEPVVTDDGLVSSRKPDDLPAFCAKIVEE 177
                 *******************************************************************995 PP

>> Catalase_C  C-terminal domain found in long catalases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   7.1e-09   3.2e-05       1     117 [.       7     124 ..       7     161 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 7.1e-09
  Catalase_C   1 dglkVgiLasndseaslaqakalaaalaaegvdvtvvaeklg........saeg....vnrTYstadaveFDaivvadgaeslfsakataasslfpagr 87 
                 +g+++++La++   ++  + ++ ++a++++g+++++v  k g        ++ g    v+ T + ada  +D++v+ +g   +     ++++ l  +++
  KIR64772.1   7 QGKRIAFLATDGV-EE-VEYTRPREAVENAGATAELVSLKPGkiqafdhlDH-GgtydVEVTVADADAGRYDGLVLPGG---V-----ANPDFLRTDPD 94 
                 6899*****7443.44.4556779*************733333323334322.23666*********************...2.....34667999*** PP

  Catalase_C  88 plqllldayrhgKpigalGsgaealkaagi 117
                 ++++++  +  gKp+g++ +g  +l +a++
  KIR64772.1  95 AVRFVKAFFDAGKPVGVICHGPWTLVEADV 124
                 ******************998777666555 PP

>> MctB  Copper transport outer membrane protein, MctB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   2.4e-05      0.11      80     113 ..       5      38 ..       1      46 [. 0.93
   2 ?    1.5   0.0     0.044     2e+02     101     134 ..     135     169 ..     124     181 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.4e-05
        MctB  80 rLtgrsVavvttpdadeedvdavtelleqAGAtv 113
                 +L+g+++a ++t++++e ++++ +e++e+AGAt 
  KIR64772.1   5 TLQGKRIAFLATDGVEEVEYTRPREAVENAGATA 38 
                 8*******************************96 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.044
        MctB 101 avtelleqAGAtvtgtvtltdk.fvdpdeadklrs 134
                 ++++ l++AGAt + +  +td+ +v++ + d l +
  KIR64772.1 135 SLRTDLTNAGATWVDEPVVTDDgLVSSRKPDDLPA 169
                 67899*******99888777651566666666655 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.1e-05      0.14      39      81 ..      70     116 ..      46     126 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.1e-05
                 THHSTSEEEEEEESSCTT....TTTHHHHHHHHCTSTS-EEEETHHH CS
      GATase  39 llknpdgilvsgGpgspg....vegkieaikearenkiPiLGICLGm 81 
                  +  +dg++++gG+ +p        +++++k ++++++P+  IC G 
  KIR64772.1  70 DAGRYDGLVLPGGVANPDflrtDPDAVRFVKAFFDAGKPVGVICHGP 116
                 35689**************8877889999999999*****9999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1214.35
//
Query:       KIR64773.1  [L=556]
Description: multidrug MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-52  178.2  60.5    1.8e-51  175.2  57.8    3.1  2  MFS_1         Major Facilitator Superfamily
    1.3e-16   60.2  24.4    1.7e-16   59.8  24.4    1.1  1  TRI12         Fungal trichothecene efflux pump (TRI12)
    3.1e-12   46.1   9.6    3.1e-12   46.1   9.6    2.9  3  Sugar_tr      Sugar (and other) transporter
  ------ inclusion threshold ------
      0.023   13.0  14.7        0.2    9.9   2.0    3.5  3  OATP          Organic Anion Transporter Polypeptide (OATP) fa
       0.14   11.9   0.3       0.45   10.2   0.3    1.8  1  Sigma70_r4_2  Sigma-70, region 4


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.2  57.8     5e-55   1.8e-51       2     352 ..      22     413 ..      21     414 .. 0.91
   2 ?    1.5   0.0     0.031   1.1e+02     143     187 ..     478     519 ..     466     543 .. 0.73

  Alignments for each domain:
  == domain 1  score: 175.2 bits;  conditional E-value: 5e-55
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 + + +l+al+ +i+g+alp ++  +lg   + +++++t+y l++ ++++++G ++d +Grr+v+l+++ +f+lg+ll+ +++ ++ l+v r +qGlgag
  KIR64773.1  22 MTGMLLAALDQTIVGTALP-TIVGELG-GIDHYSWVVTAYLLASTASTPLYGKMADLYGRRPVFLFSIGTFLLGSLLAGLSQDMTQLIVTRGVQGLGAG 118
                 67899**************.9******.**********************************************666667455559************* PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........... 188
                 +l++++ ++i+d+++++ergr+ gl++a f+++++ gpl+gg++a  ++Wr++fy++ ++++la+v+ + +++  p +r+  +   ++           
  KIR64773.1 119 GLMTLAFTIISDVVSPRERGRYQGLFGAVFGIASVAGPLVGGYFA-EANWRWIFYLNVPLAILAIVVCYHVMRLIPFQRREHAIDWLGaallvagvscl 216
                 *********************************************.779*****************87888888888888777777778999******* PP

       MFS_1 189 ...................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllal 252
                                                    + ++  p++p +++++++ + + +  a ++ +++++g  +++plylq v g s    +gl l+l
  KIR64773.1 217 llalswggnsyawgsavivglfvagavlgglfllqEARVAEPILP-LRLFRSRTFAL-ANGAGFVLGLVMFGSIIFIPLYLQIVKGAS-PTRSGL-LML 311
                 **************************9999999988888888888.99999999776.66677777789999****************.466664.444 PP

       MFS_1 253 lalvgail.allagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvl.iGfglgfvfpsllalasdlappeeagtasglfntagslgg 349
                 ++++g+i+ ++l+gr ++r+gr +   +a++++lla ++l+   + ++++++++++++ iG+glg+ + sl+ +++++++p+  g+ ++ +++++slgg
  KIR64773.1 312 PMMAGIIVtSILTGRAMTRIGRYKWFPVAGSVVLLAGMLLFTRLAVDTSLWVAFGYLTvIGVGLGLSMQSLILAVQNSVGPRDLGAGTSSATFFRSLGG 410
                 444444444***************************9999999999********66666**************************************** PP

       MFS_1 350 alg 352
                 ++g
  KIR64773.1 411 SFG 413
                 *98 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.031
       MFS_1 143 llasslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                 ++++s   ++vf+  ++v+++a vl+ l lp e+ + + ++++  
  KIR64773.1 478 AFVES--LHLVFLTTGLVAVVA-VLVTLALPNEKLRGAGPRGASG 519
                 55544..478999999999998.5677888888777777776665 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8  24.4   4.8e-20   1.7e-16      64     483 ..      36     439 ..      22     502 .. 0.82

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 4.8e-20
       TRI12  64 asalpnilqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpaga.splfvgelms. 160
                  +alp i+ ++g  +  s + t + +  + s  + g+++d +grrp+ + +    l+g+++   ++ +  l+ +  + g+ ag   + +  ++ +++s 
  KIR64773.1  36 GTALPTIVGELGGIDHYSWVVTAYLLASTASTPLYGKMADLYGRRPVFLFSIGTFLLGSLLAGLSQDMTQLIVTRGVQGLGAGGLMTlAFTIISDVVSp 134
                 579*******************************************999888888999***99*****************9987665155688999993 PP

       TRI12 161 .nktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhgkkvrkreelakldwigiilvivgvslfllgv 258
                  ++ ++ gl+     + + s ++p +g  +a + +wrwify+ +    +a+l ivv y+   +  +     ++r e   +dw+g  l+++gvs +ll +
  KIR64773.1 135 rERGRYQGLFGAVFGI-A-SVAGPLVGGYFA-EANWRWIFYLNV---PLAILAIVVCYHVMRLIPF-----QRR-EH-AIDWLGAALLVAGVSCLLLAL 220
                 3456799988655444.3.347999999887.79*******987...5788899****98665543.....344.44.49******************* PP

       TRI12 259 swggkpnspwnsakviglissglgslvvfalyevygkpvrpivppalfkdtrgfvcillissimgamnlslviiypqqvvnifgsslknweetawmsat 357
                 swgg+    w sa ++gl+ +g+    +f l e   +  +pi+p  lf+ +r f        ++g + +  +i+ p  +  + g+s      +  +   
  KIR64773.1 221 SWGGNS-YAWGSAVIVGLFVAGAVLGGLFLLQEA--RVAEPILPLRLFR-SRTFALANGAGFVLGLVMFGSIIFIPLYLQIVKGASPTR---SGLLMLP 312
                 ****86.57*************999999999995..7899********8.699*99999999***999999999999888788887543...3444455 PP

       TRI12 358 asfgtgagvvvlgslfhlvrhirwqilvgalwltaflgamssvnrdnknaaialsvls..gfvvawaqditmllvqfittdedlgvafavvaaarpfag 454
                    g     ++ g  +  +   +w  + g++ l a +  ++ +  d     +a+ +l+  g+ ++ + +  +l vq      dlg   +  +  r + g
  KIR64773.1 313 MMAGIIVTSILTGRAMTRIGRYKWFPVAGSVVLLAGMLLFTRLAVDTS-LWVAFGYLTviGVGLGLSMQSLILAVQNSVGPRDLGAGTSSATFFRSLGG 410
                 566888889999*******************99998888888888764.34566666611555566667778899************************ PP

       TRI12 455 siftaafislysnrypkelashlssalrg 483
                 s   a + ++ s r   +la+ + +al  
  KIR64773.1 411 SFGVAILGAVLSSRLADQLAARMPAALAQ 439
                 *9999999**************9999864 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   9.6   8.6e-16   3.1e-12      48     188 ..      52     185 ..      21     190 .. 0.91
   2 ?   -1.6   0.5      0.26   9.5e+02      48      66 ..     231     249 ..     211     254 .. 0.74
   3 !   10.8   8.0   4.5e-05      0.16      44     120 ..     302     379 ..     266     443 .. 0.78

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 8.6e-16
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqla 146
                 ++++v ++l+ ++++  + g+++d +GR++++l+++  f+ g++l ++++    + +liv R + G+g+G+  +l+ + is +  ++ Rg+  +l+   
  KIR64773.1  52 YSWVVTAYLLASTASTPLYGKMADLYGRRPVFLFSIGTFLLGSLLAGLSQ---DMTQLIVTRGVQGLGAGGLMTLAFTIISDVVSPRERGRYQGLFG-- 145
                 68************************************************...9****************************************985.. PP

                 HHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG CS
    Sugar_tr 147 itfGilvaaifglglnktsnadgwrillglqlvpallllill 188
                  +fGi  a++ g  +  + ++  wr+ ++l++ +a+l +++ 
  KIR64773.1 146 AVFGI--ASVAGPLVGGYFAEANWRWIFYLNVPLAILAIVVC 185
                 57776..6666666755555589************8887765 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.26
                 HHHHHHTHHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfa 66 
                 s +iv++f++Ga++G+lf+
  KIR64773.1 231 SAVIVGLFVAGAVLGGLFL 249
                 5677888888888888774 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 4.5e-05
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHH.HHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslli.aavlfvigavlqaaakgknsvevlivgRvlvGigvGlas 120
                 s ++sgl++  +++G i++s+++g +++r+GR k + + ++v++++g +l      ++s++v +    ++G+g+Gl  
  KIR64773.1 302 SPTRSGLLMLPMMAGIIVTSILTGRAMTRIGRYKWFPVaGSVVLLAGMLLFTRLAVDTSLWVAFGYLTVIGVGLGLSM 379
                 557899**************************88887736677777777766666678*****************964 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.8   0.00023      0.83     135     193 ..     106     164 ..      96     177 .. 0.89
   2 ?    2.5   0.2      0.01        36      59      85 ..     194     220 ..     175     223 .. 0.83
   3 ?    9.9   2.0   5.6e-05       0.2     288     386 ..     262     355 ..     251     368 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00023
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 135 fflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllk 193
                 +++   ++G+Ga  ++tl+ + i D v++++   y g++ a+  +  + G l+G+++++
  KIR64773.1 106 LIVTRGVQGLGAGGLMTLAFTIISDVVSPRERGRYQGLFGAVFGIASVAGPLVGGYFAE 164
                 56667789**********************************************99976 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.01
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  59 fggrghrPrwigigallmalgslllal 85 
                 f  r h   w+g+++l+ ++++lllal
  KIR64773.1 194 FQRREHAIDWLGAALLVAGVSCLLLAL 220
                 456789999****************98 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 5.6e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 288 krllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakklaklvlvvsllsllllllllfl 386
                 +rl+++++f l   ++ +  l++ G i+F+p yl+   + s++++ ll    ++p +++Gi++  +l+ +   ++ +   + +  s++ l+++ll+  l
  KIR64773.1 262 LRLFRSRTFALANGAGFVLGLVMFGSIIFIPLYLQIVKGASPTRSGLL----MLP-MMAGIIVTSILTGRAMTRIGRYKWFPVAGSVVLLAGMLLFTRL 355
                 699*******************************98877777766555....555.678****************999999999999999999988765 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3   0.00012      0.45       6      20 ..     435     449 ..     431     450 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00012
                   HHHTTS-HHHHHHHH CS
  Sigma70_r4_2   6 ealaeLperqreifl 20 
                   +ala+Lp++qr+++l
    KIR64773.1 435 AALAQLPPQQRAAVL 449
                   79***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 3748.37
//
Query:       KIR64774.1  [L=163]
Description: NUDIX hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-18   65.8   0.0    4.7e-18   65.5   0.0    1.1  1  NUDIX     NUDIX domain
  ------ inclusion threshold ------
      0.021   14.8   0.0      0.025   14.6   0.0    1.3  1  NUDIX_4   NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   5.2e-22   4.7e-18       5     119 ..      26     139 ..      23     151 .. 0.75

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 5.2e-22
                 EEEEEEEETTSEEEEEEESSSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEE......EEEEEEEEE.EEECSG CS
       NUDIX   5 avgvvllnekgevLlvrrskkpfpg.WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygd......eheilyvfl.eevege 95 
                 ++ +v++++ g+vLl+rrs    +g W+lP+G +e gE+++++A+RE++EEtGl+a  l++ +   y+ p++    +         +++ f+ e+++ge
  KIR64774.1  26 GARAVVRDSAGRVLLIRRS---DNGqWALPAGAMELGESIADCAVREVREETGLRA--LRVGAFALYTGPDRIT--TnmyghtYQVFTVAFRvEDWDGE 117
                 78899**************...5557****************************66..5555544444443332..23574333444456669****** PP

                 CSSTSTTTEEEEEEEEHHHHHHHH CS
       NUDIX  96 lepndenevsevrwvpleellkek 119
                 l    ++e+ ++ ++  + + +++
  KIR64774.1 118 LVRA-TDETTDAGFFHRDRF-PAP 139
                 9998.999999989988887.444 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.7e-06     0.025       3      52 ..      29      79 ..      27     147 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.7e-06
                EEEEEC.TEEEEEE--TTSSSTT-EE-SEEE.-TTS-HHHHHH...HHHHS-EEE CS
     NUDIX_4  3 llirdd.grvllekRpekgllggLwefPgge.eegeeleeala...reelgieve 52
                +++rd  grvll +R ++    g w +P g  e ge+ +++++   ree+g+ + 
  KIR64774.1 29 AVVRDSaGRVLLIRRSDN----GQWALPAGAmELGESIADCAVrevREETGLRAL 79
                6889999**********8....888899877677888555554566777776332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1431.11
//
Query:       KIR64775.1  [L=549]
Description: long-chain fatty acid--CoA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-92  309.1   0.0      5e-92  308.7   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    3.7e-20   72.7   3.9      2e-19   70.4   0.4    2.7  2  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.7   0.0   5.6e-96     5e-92       5     422 ..      20     442 ..      16     443 .. 0.90

  Alignments for each domain:
  == domain 1  score: 308.7 bits;  conditional E-value: 5.6e-96
                  HHHSTTSEEEEE.CCSTEEEEHHHHHHHHHHHHHHHH.HTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEE CS
  AMP-binding   5 aaktpdkvalvd.sgegqtlTYreldervnrlAagLr.slGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvlia 100
                  a  +  + ++++ +ge ++++Y+e+ +++ rlA++Lr + Gv+ ++rVa +++n  e++va++a+ ++Gav+ +ln +l ++++ayi ++++ +v++ 
   KIR64775.1  20 ATVHGTAEVVTWtGGEPRRMSYAEVGRAAARLAHALRdECGVTGDERVATFMWNNNEHLVAYFAVPSMGAVLHTLNLRLFPDQVAYIANHAQDRVVL- 116
                  5566667777778999**********************9**********************************************************. PP

                  TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.........-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHH CS
  AMP-binding 101 tvdselleklleaaakleavklvivldadellkeeelkeeeeseekae.........kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanva 189
                   vds+l++ l+++ ++l +v++v+v+  ++++    + ++  + +  +         +  + +e+++ d a ++YTSGTTG+PKGV +shr++     
   KIR64775.1 117 -VDSTLIPLLARVIGDLATVRHVVVVGGGDPAPLVAAAGDRIAVH--HwdallagkpEVFDWPEVDERDAAALCYTSGTTGNPKGVAYSHRSIYLHSL 211
                  .*************************9998887744444443333..144778888855567789*************************99966556 PP

                  HHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT-S CS
  AMP-binding 190 slkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sgalkaakkakdlsslr 286
                  ++ +++ f+l+++d+ l+i+p++h++++    ++a+lsGa++++++++ +  ++ ++++i+++++t+  +vP++++ ll+  ++ +      d ssl+
   KIR64775.1 212 QICMPEGFGLGPTDRELAIVPMFHAMSW-GLPYAAFLSGASLIMPDRFLQ--AAPIAAMIAAERPTLAGAVPTIWNDLLAyLDEHD-----VDTSSLK 301
                  6558888*********************.***************997766..67799***********************655444.....4999*** PP

                  EEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEE......CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEE.TTSE.EEEEEEETTS-S CS
  AMP-binding 287 lvllggeplspellrffralfgeevlegYGlTEttgvvtv......lpleedkkklgsvGkplpgvevkivDeetgepvp.dgee.Gellvrgpgvmk 376
                   v++gg++++p+l+++f ++    v++++G+TE+++  +v      ++ e+ +++++++G++ +gv ++iv +  gep+p dg + Gel vrgp+v+ 
   KIR64775.1 302 EVIVGGSACPPALMHAFDERHHVDVIHAWGMTEMSPLGSVarppagATGEDAWRYRYTQGRVPAGVAARIVGPL-GEPLPaDGASvGELEVRGPWVTA 398
                  ********************999***************888999999999************99*********9.99998566669************ PP

                  EBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 377 gYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                   Y ++++  +e+f   ++wlrTGD+g+l +dGyl +++R+kd+ik+
   KIR64775.1 399 RYVGDDAPDEEKFR--DGWLRTGDVGTLSPDGYLTLTDRAKDVIKS 442
                  *************8..57**************************97 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.3     0.027   2.5e+02      30      66 ..     103     141 ..      48     146 .. 0.83
   2 !   70.4   0.4   2.2e-23     2e-19       1      76 []     451     526 ..     451     526 .. 0.97

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.027
                    EEEEEE------...HHHHHHHHHHHHT-TTTS-SEEEE- CS
  AMP-binding_C  30 vafVvlkdgsea...leeeLkahvrkelgpyavpkkvvfv 66 
                    va++  +++      ++ +L+  +++ +g++a+ ++vv+v
     KIR64775.1 103 VAYIANHAQD-RvvlVDSTLIPLLARVIGDLATVRHVVVV 141
                    5555554221.1244678888899999*****99999988 PP

  == domain 2  score: 70.4 bits;  conditional E-value: 2.2e-23
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    e+E+al++hpaV ea+VvGvpde++ e+++a Vv ++g e ++eeL+++++  ++ +  p++  fvd++pkt  GK
     KIR64775.1 451 ELENALMAHPAVLEACVVGVPDERWDERPLATVVVREGAEVTAEELRDFLAGSVARWQLPERWAFVDAVPKTSVGK 526
                    89*********************************98976699********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 4412.83
//
Query:       KIR64776.1  [L=341]
Description: NADPH:quinone reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-20   72.4   2.1    5.6e-20   71.6   2.1    1.4  1  ADH_zinc_N    Zinc-binding dehydrogenase
    4.2e-08   33.0   0.0      9e-07   28.8   0.0    2.4  2  ADH_N         Alcohol dehydrogenase GroES-like domain
    1.7e-07   32.3   1.4    4.5e-07   31.0   1.4    1.8  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
     0.0053   16.6   0.6      0.021   14.7   0.0    2.2  3  ADH_N_2       N-terminal domain of oxidoreductase
  ------ inclusion threshold ------
      0.057   13.7   0.9       0.21   11.9   0.9    2.0  1  DUF1970       Domain of unknown function (DUF1970)


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   2.1   1.6e-23   5.6e-20       1     116 [.     161     275 ..     161     290 .. 0.92

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 1.6e-23
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgeeefd 98 
                 +vG aa+qlA+ + a+v+a++ss+ek+ la+  Ga +v+ny+e d+ve+++++  ++gv+ ++e+++  +   a ++ll+ gG + v++  g+ge +++
  KIR64776.1 161 AVGNAAIQLARWADATVVATVSSAEKANLAAAAGASFVVNYREQDVVEEVRKIA-PDGVHTIVEVSA-ARNAAADVQLLRAGGAVCVYADdGGGEVTLP 257
                 69***************************************555**********.99**********.**********************8888888** PP

                 HHHHHHTT-EEEEE-SSC CS
  ADH_zinc_N  99 lrnlllkeksilGsllgs 116
                 +r+l++ + + + +l+++
  KIR64776.1 258 IRPLMAPNARWQFVLVYT 275
                 *********999998887 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.5e-10     9e-07       1      61 [.      27      85 ..      27      91 .. 0.89
   2 ?    1.7   0.0     0.066   2.4e+02      92     108 ..      94     110 ..      87     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.5e-10
                TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE CS
       ADH_N  1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvv 61
                pgevl++v+++g++ +D +  +   +++ +  +++G + +G+ve+vg +v++  +G+rV +
  KIR64776.1 27 PGEVLVRVAVSGVNPTDWKARRA--SPPPAGWQTPGQDGAGVVEAVGAGVDRNLIGERVWL 85
                689***************99998..45555567*************************975 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.066
                 -SSSBSEEEECGGGEEE CS
       ADH_N  92 dGgfaeyvvvpekklvk 108
                 +G+ aey+vvp +++v+
  KIR64776.1  94 WGTAAEYTVVPVRQAVP 110
                 7**********999887 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   1.4   1.3e-10   4.5e-07       2     133 .]     194     332 ..     193     332 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.3e-10
                   T-SEEEETTSTTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----..S-EEE-CHHHCTTT-EEEE--GGG...-....-HHHHH CS
  ADH_zinc_N_2   2 GAdevidyrtedfe...aatggegvDvvldtvggealleaslkvlpggGrlvsiggpp.lsaallkpakkrkgrsvkyeflfsmkas...aqadile 91 
                   GA  v++yr++d++   +++ ++gv  +++  +  ++ +a +++l+ gG +++++++     +l+ +++++  ++ +++f++ + +    a+a++ +
    KIR64776.1 194 GASFVVNYREQDVVeevRKIAPDGVHTIVEVSAARNA-AADVQLLRAGGAVCVYADDGgGEVTLPIRPLMA--PNARWQFVL-VYTApavAKAQAVA 286
                   9********999999**9999*********9998888.788899*77588877775444444444444544..777777777.344446888999** PP

                   HHHHHHHHHH---.....-EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  92 elaalieeGklrp.....vvdrvfpleeaaeAhrylesgrarGKiVl 133
                   ++ a  ++G +r+      + ++ pl+++a Ah+++e ++++GK+ +
    KIR64776.1 287 DVSAAAAQGGIRVgeaagLPLHHHPLAATAAAHEAVE-NSVVGKVLV 332
                   **********998333333445788999********9.578999876 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.8e-06     0.021      14      45 ..      11      42 ..       5      55 .. 0.88
   2 ?   -3.1   0.0         2   7.2e+03      88     101 ..     166     179 ..     161     192 .. 0.51
   3 ?   -2.2   0.1       1.1   3.9e+03      64      84 ..     320     340 ..     313     341 .] 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.8e-06
     ADH_N_2 14 tesdfeleeeelpelkdGevlvralylSvDPy 45
                ++s ++l++ ++pe+++Gevlvr+   +v P+
  KIR64776.1 11 DASVLRLVDRPVPEPGPGEVLVRVAVSGVNPT 42
                677899*******************9999997 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2
     ADH_N_2  88 Vvgllgwqdyavsd 101
                  ++l+ w+d +v++
  KIR64776.1 166 AIQLARWADATVVA 179
                 44555555544432 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.1
     ADH_N_2  64 dvmrggavgeVveSknpdfkv 84 
                 + ++ ++vg+V+ +  ++ ++
  KIR64776.1 320 EAVENSVVGKVLVTTTEEASA 340
                 556677888888777776655 PP

>> DUF1970  Domain of unknown function (DUF1970)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.9   5.8e-05      0.21      24      86 ..     228     297 ..     217     305 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.8e-05
                 HTT-S-SS-TT----TT-SS---S-S---S---------....------...------------------ CS
     DUF1970  24 rrpavdvasnweGrtvivyddpqaGevslpvlGyvspss....alpnrr...asvtgetdvsdavadGad 86 
                 r  a+dv     G +v vy d   Gev+lp+   ++p +     l       a   + +dvs+a a+G+ 
  KIR64776.1 228 RNAAADVQLLRAGGAVCVYADDGGGEVTLPIRPLMAPNArwqfVLVYTApavAKAQAVADVSAAAAQGGI 297
                 667899999999*************************873333233333000334456788999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2677.02
//
Query:       KIR64777.1  [L=68]
Description: hypothetical protein TK50_03995 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       110  (0.00613531); expected 358.6 (0.02)
Passed bias filter:                       60  (0.00334653); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 565.87
//
Query:       KIR64778.1  [L=378]
Description: aldehyde dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-29  100.3   0.4    8.1e-29   99.7   0.4    1.3  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    3.3e-12   46.1   1.0    3.3e-12   46.1   1.0    2.1  2  ADH_N_assoc   Alcohol dehydrogenase GroES-associated
    3.2e-10   40.1   0.3    1.8e-09   37.6   0.3    2.0  1  ADH_zinc_N    Zinc-binding dehydrogenase
    9.4e-06   25.1   0.1    1.5e-05   24.5   0.1    1.2  1  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain
     0.0017   17.9   0.1     0.0062   16.0   0.1    1.9  1  Glu_dehyd_C   Glucose dehydrogenase C-terminus
     0.0048   17.9   0.0      0.008   17.2   0.0    1.3  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
     0.0055   15.4   0.4      0.011   14.5   0.2    1.5  2  HI0933_like   HI0933-like protein
  ------ inclusion threshold ------
      0.015   14.7   0.3      0.023   14.0   0.3    1.2  1  FAD_oxidored  FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.4   3.6e-32   8.1e-29       1     102 [.      25     134 ..      25     143 .. 0.88

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 3.6e-32
                 TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-.........TTBEETTTS CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlC.........eeakllgvs 90 
                 p++v++++++++iCgsDlh+++g  ++ +++++++GHE +G+veevgp+v ++++GdrV ++++++cg C++C+eg++ +C           +++    
  KIR64778.1  25 PNDVIVRITTTAICGSDLHMYEG--RTLAEPGIVFGHENMGVVEEVGPGVVHIRKGDRVSMPFNVACGFCRNCREGKTGFCltvnpgfagGAYGY---V 118
                 589*******************9..6999****************************************************99888865533333...2 PP

                 ....S-SSSBSEEEEC CS
       ADH_N  91 ....ldGgfaeyvvvp 102
                     ++Gg+aey+ vp
  KIR64778.1 119 amgpYRGGQAEYLRVP 134
                 4558**********99 PP

>> ADH_N_assoc  Alcohol dehydrogenase GroES-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   1.0   1.5e-15   3.3e-12       1      23 []       1      23 [.       1      23 [. 0.99
   2 ?   -2.7   1.3       2.6   5.9e+03      14      19 ..     205     210 ..     205     210 .. 0.94

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 1.5e-15
  ADH_N_assoc  1 MKAVTyqGpkdVrVeeVPDPkIe 23
                 M+AV+yqGp++V+V eVPDP+Ie
   KIR64778.1  1 MRAVVYQGPHEVAVNEVPDPRIE 23
                 **********************8 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.6
  ADH_N_assoc  14 VeeVPD 19 
                  V+ VPD
   KIR64778.1 205 VDKVPD 210
                  99***9 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.3   8.1e-13   1.8e-09       1     105 [.     185     313 ..     185     336 .. 0.73

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 8.1e-13
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSC...........SHHHHHHHHHCEEEEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvG...........sgatleaalkllkpgGrlv 86 
                 +vGl+a   A  +Ga ev+ vd  +++l+la+++Ga  v  +  a d+ve+i+e t+g g d  +++vG             a+l++ +++++p G l 
  KIR64778.1 185 PVGLMAAYSALLMGAaEVFLVDKVPDRLRLAESIGAIPVDFT--AgDPVEQIREQTDGVGTDRGVDAVGyqasgaggeehPAAVLNSLVDVVRPTGSLG 281
                 7**********************************9998777..55**********9989998888888333223333322356788888888888888 PP

                 ECSC.....TSSEEE............EEHHHHHHT CS
  ADH_zinc_N  87 vvGg.....gkgeee............fdlrnlllk 105
                 vvG+     +                 f++++++ k
  KIR64778.1 282 VVGLylahdP----GapderagrgelvFKVGKFFEK 313
                 8888643222....1233455555555555555555 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   6.5e-09   1.5e-05      16      77 ..     165     225 ..     156     250 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 6.5e-09
                  EEETTCEETCB---EEEEESTSHHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTTCECEE CS
  AlaDh_PNT_C  16 kgtlaGgvpgvepakvlviGgGvaGlqAiatakglga.kVtvlDvrparleqleslgakfvev 77 
                  +g++++g++     +++v+GgG +Gl A+  a  +ga +V ++D+ p+rl+  es+ga  v+ 
   KIR64778.1 165 HGVAMTGLR--PGENITVMGGGPVGLMAAYSALLMGAaEVFLVDKVPDRLRLAESIGAIPVDF 225
                  567777777..44479*******************9648****************99987776 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   2.8e-06    0.0062      32     203 ..     176     363 ..     168     374 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.8e-06
  Glu_dehyd_C  32 esalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYvd.sretpvdeipeas......eemdlv.vEaTGs.....akhafe 116
                  e   v+G G++GL+a+    +  +g  +v+ +++   pd +++l e++Ga  vd ++ +pv++i e++      + +d v + a G+     ++++++
   KIR64778.1 176 ENITVMGGGPVGLMAAYSALL--MGAAEVFLVDK--VPD-RLRLAESIGAIPVDfTAGDPVEQIREQTdgvgtdRGVDAVgYQASGAggeehPAAVLN 268
                  5678***********766554..68888999996..344.5789*********944568999998765111111445665566766433333444554 PP

  Glu_dehyd_C 117 .aiealapnGvaaLlGvpeds.evevdggelhrelv......leNkalvGsvNanrrhfeaavdtLaalpeslldelvtkvvdldeleeAfeddd 203
                    ++ ++p+G    +G++  +   + d  +   elv       e  + +G+  an++ +++ +++L  + +   + +v+k+++l+++ eA+++ d
   KIR64778.1 269 sLVDVVRPTGSLGVVGLYLAHdPGAPDERAGRGELVfkvgkfFEKGLRMGTGQANVKSYNEYLRNLIMAGRAKPSFVVSKELPLADAPEAYQRFD 363
                  15788999999999999865423333333334444411111145666799999999999999999999999999999999999999999998755 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.6e-06     0.008      12     127 ..     232     367 ..     220     374 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.6e-06
                   TTHHHHH-TT-EEEEEES-H...........HHHH.HHHHHHEEEEEEEEE--.--...S-EEE-CHHHCTTT-EEEE--GGG...-.......... CS
  ADH_zinc_N_2  12 edfeaatggegvDvvldtvg...........gealleaslkvlpggGrlvsig.gpp..lsaallkpakkrkgrsvkyeflfsmkas.........a 85 
                   e+++++t+g g D  +d+vg            +a l  +++v+++ G l ++g         + +++++ r++  +k+  +f+   +         +
    KIR64778.1 232 EQIREQTDGVGTDRGVDAVGyqasgaggeehPAAVLNSLVDVVRPTGSLGVVGlY-LahD-PGAPDERAGRGELVFKVGKFFE---KglrmgtgqaN 323
                   4455888899999999999999999997775444445566888888*99777733.2222.2222233335555555555554...12345555554 PP

                   -HHHHHHHHHHHHHHH---..-EEEEEEGGGHHHHHHHHHSS-- CS
  ADH_zinc_N_2  86 qadileelaalieeGklrp..vvdrvfpleeaaeAhrylesgra 127
                    +   e l +li +G+ +p  vv++++pl++a+eA+++  ++ a
    KIR64778.1 324 VKSYNEYLRNLIMAGRAKPsfVVSKELPLADAPEAYQRFDQREA 367
                   444459999*******9975589999************998776 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   4.9e-06     0.011       2      33 ..     177     209 ..     176     220 .. 0.86
   2 ?   -2.7   0.0      0.79   1.8e+03      31      69 ..     306     344 ..     283     347 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.9e-06
                  SEEEE--SHHHHHHHHHH.HHTT--EEEE-SSS CS
  HI0933_like   2 dviviGgGaAGlmaAisa.akrgkrVlllekak 33 
                  ++ v+GgG+ GlmaA sa     ++V l++k +
   KIR64778.1 177 NITVMGGGPVGLMAAYSAlLMGAAEVFLVDKVP 209
                  689***************6667789****9976 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.79
                  SSSSS-HHHHHCGGGT-EEEETT-SGGGEEES...STTT CS
  HI0933_like  31 kakklgrKilisGgGrcNvTnlseepeellsrypenpkf 69 
                  k  k+ +K l  G G+ Nv  ++e +++l+   +++p f
   KIR64778.1 306 KVGKFFEKGLRMGTGQANVKSYNEYLRNLIMAGRAKPSF 344
                  55677788888899****999888888888775555555 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.3     1e-05     0.023       2      30 ..     178     207 ..     177     209 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1e-05
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGa.kvlLvee 30 
                   + V+GGgp G++AA++A  +Ga +v Lv++
    KIR64778.1 178 ITVMGGGPVGLMAAYSALLMGAaEVFLVDK 207
                   78*******************857888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2924.40
//
Query:       KIR64779.1  [L=217]
Description: HAD family hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-28   97.8   0.0    8.4e-28   97.6   0.0    1.0  1  HAD_2           Haloacid dehalogenase-like hydrolase
    7.1e-19   68.9   0.3    3.3e-18   66.7   0.3    1.9  1  Hydrolase       haloacid dehalogenase-like hydrolase
    6.3e-10   39.0   0.2    1.2e-09   38.1   0.2    1.5  1  Hydrolase_like  HAD-hyrolase-like
    3.8e-06   27.4   0.2    6.7e-06   26.6   0.2    1.4  1  HAD             haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   1.9e-31   8.4e-28       1     178 []       5     183 ..       5     183 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 1.9e-31
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeeekieellrkyneekkk...kevkpydgvkelLeeLkeagy 96 
                 ++FDlDg+++d+e+++ ++ +  ++ +g  +++++  r+l+g+s+ e  r+l  +  ++ + e++  ++++e+ +   + v ++dg+ e++  L +a+ 
  KIR64779.1   5 VVFDLDGVIVDSEPVWEEVRRAYVATHGG-TWQPDTQRRLMGMSTGEWARYLSGELGVDRTAEQVAVEVVDEMGRryaERVPVIDGADEVVRRL-AARW 101
                 79****************99999888854.9***************************998888877777777776778***************.99** PP

       HAD_2  97 klgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikviav 178
                  lg+++s+ ++ +   l+++g+++ F   +++e++e+ KP+p+v++++ ++l++++++++ v+Ds++++ +a +ag++v+av
  KIR64779.1 102 PLGLASSSPTRLIAAALAATGLTEAFGATLSTEETERGKPAPDVYLEVARRLGVDPARCVAVEDSSNGVRSAAAAGMRVVAV 183
                 *******************************************************************************997 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.3   7.4e-22   3.3e-18       2     210 .]       3     177 ..       2     177 .. 0.81

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 7.4e-22
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHH..HHCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaq..sqgr 98 
                 ++vvfD+dG+++++ep+ e+v +                      va   + + +    ++        +   ew + l        + g     +q  
  KIR64779.1   3 DAVVFDLDGVIVDSEPVWEEVRRAY--------------------VATHGGTWQPD-TQRR-----LMGMSTGEWARYL------SGELGVDRtaEQVA 69 
                 79****************9999999....................55555554444.4444.....5777777777777......22222222003334 PP

                 HHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  99 tvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeevamV 196
                  ++++  +  + ++   p  v ++a e+v++L a+ ++++l++++  +   +a+   G  ++f a++++++++ +kp p+ +++++r+L+++p+++++V
  KIR64779.1  70 VEVVD--EMGRRYAERVP--VIDGADEVVRRLAAR-WPLGLASSSPTRLIAAALAATGlTEAFGATLSTEETERGKPAPDVYLEVARRLGVDPARCVAV 163
                 44444..77777777777..*************77.99*************99999******************************************* PP

                 ESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxx RF
   Hydrolase 197 GDgvnDaaalaaAg 210
                 +D+ n++  +aaAg
  KIR64779.1 164 EDSSNGVRSAAAAG 177
                 *************8 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.2   2.7e-13   1.2e-09       2      73 ..     138     206 ..     137     208 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 2.7e-13
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEE CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddla 73 
                     +gKP+p +y + +++lg+dp++++++ D+    +++A +aG++ v+V  G++  +   ++e+ +++v++ + 
      KIR64779.1 138 RGKPAPDVYLEVARRLGVDPARCVAVEDS-SNGVRSAAAAGMRVVAVPHGAYPLDP--DAEALAAVVLPAVG 206
                     59***************************.*********************98866..44566666666665 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.2   1.5e-09   6.7e-06       1     177 [.       5     163 ..       5     173 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.5e-09
         HAD   1 alfDfDgTLldgdsle.lllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalellaahr 98 
                 ++fD+Dg ++d+++ + + +r+++++++   w+   ++ l+ + +++   ++++ +  ++++ ++ + e+ +e++r + +++ p  +  ga e+++ ++
  KIR64779.1   5 VVFDLDGVIVDSEPVWeEVRRAYVATHGGT-WQPDTQRRLMGM-STGEWARYLSGELGVDRTAEQVAVEVVDEMGRRY-AERVPV-I-DGADEVVR-RL 97 
                 79**********999977777677666655.999999977777.6666666688888999999999999999999999.455565.4.6*******.66 PP

         HAD  99 aaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvay 177
                 aa +++ + S+++ +l+ + la+ g  e  +  l +      e        rg+  +++  e   a+  g d++++va+
  KIR64779.1  98 AARWPLGLASSSPTRLIAAALAATGLTEAFGATLST------E-----ETERGKPAPDVYLE--VARRLGVDPARCVAV 163
                 999**********************55554442222......2.....22222222222222..244466666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1610.74
//
Query:       KIR64780.1  [L=221]
Description: peptidylprolyl isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-20   73.8   0.0    1.9e-20   73.0   0.0    1.3  1  FKBP_C         FKBP-type peptidyl-prolyl cis-trans isomerase
  ------ inclusion threshold ------
      0.091   12.7   0.0       0.13   12.2   0.0    1.2  1  Protocadherin  Protocadherin


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   2.1e-24   1.9e-20       5      92 ..     131     216 ..     128     218 .. 0.89

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 2.1e-24
                 B-TTCEEEEEEEEEET.TSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEE CS
      FKBP_C   5 akegdtVtvhykgkle.dgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeve 92 
                 +k g+++t +y+g +  dgk+fd s++ ++p++f +G gqvikG++++l+g+kvG + +l ip +laYg+    g    p   L F v 
  KIR64780.1 131 VKAGQQITTNYVGVFYaDGKEFDASWNSGQPATFPIGVGQVIKGWDQGLVGVKVGSRVQLDIPADLAYGNDSSGG---RPAGPLRFVVD 216
                 689************88****************************************************998844...55556666665 PP

>> Protocadherin  Protocadherin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.5e-05      0.13      30      65 ..      29      64 ..      16      89 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.5e-05
  Protocadherin 30 veslskdrlkiliavlaGvvtvilvilivvlvRycr 65
                   +++ +k rl+ +++ laGv++v ++i + v+v + +
     KIR64780.1 29 KAAEKKRRLQSIVGALAGVAVVGVLITVFVVVNQGK 64
                   3356999***************99999999998544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1709.32
//
Query:       KIR64781.1  [L=130]
Description: pyridoxamine 5'-phosphate oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.5e-19   67.5   0.0    1.1e-18   67.2   0.0    1.1  1  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
    2.3e-11   43.8   0.0    2.9e-11   43.6   0.0    1.0  1  Pyridox_ox_2    Pyridoxamine 5'-phosphate oxidase
     0.0018   17.9   0.0     0.0021   17.6   0.0    1.1  1  Pyrid_ox_like   Pyridoxamine 5'-phosphate oxidase like
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.13   12.1   0.0    1.1  1  DUF447          Protein of unknown function (DUF447)


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.0   2.4e-22   1.1e-18       1      87 [.       4      89 ..       4      90 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.2 bits;  conditional E-value: 2.4e-22
                    HHHHHHHHHHHSSEEEEEEEETTSEEEEEEEEEEEETTTTEEEEEEETTSHHHHHHHHH-EEEEEEEETT.GSEEEEEEEEEEEESCH CS
  Putative_PNPOx  1 ldeelreflaeskavvlATvdedGrPnvspvllkagdgrdgivfatnadsrklrnleenprvallfldde.lgrgvrieGtaelvsdg 87
                    l+ee +++lae++++++AT+ +dG+P+v+pv+   + ++  ivf t++ ++k+ n+++ p va++++d++ + r + ++Gtae+v++g
      KIR64781.1  4 LTEEDLALLAEPQLAHVATIEPDGSPHVTPVWVDTDGEH--IVFNTAKGRQKYNNIQRTPIVAVSVVDKAnDFRTLWVKGTAEFVEEG 89
                    6788899***************************77777..*********************************************97 PP

>> Pyridox_ox_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   6.4e-15   2.9e-11       4     136 ..       7     125 ..       5     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 6.4e-15
                   HHHHHHHC-SEEEEEEEE.TTEEEEEEEEEEEETTEEEEEEETTSHCCHCCCT--.ECEEEEEEEEEEE-SEGGEEE.EEEEEEEEEEEEE--HHHH CS
  Pyridox_ox_2   4 eilalLdegevgrlafvd.dgepvilPvnyvvdgdslyfhgakgsrlaaalrgap.vcvvvtevdglvlarsfnsln.yrSVvvrGraeevtdeeek 97 
                   e lalL+e +++++a+ + dg p+++Pv + +dg++++f +akg ++++ ++ +p v+v+v +        +    n +r   v+G+ae v  ee  
    KIR64781.1   7 EDLALLAEPQLAHVATIEpDGSPHVTPVWVDTDGEHIVFNTAKGRQKYNNIQRTPiVAVSVVD--K-----A----NdFRTLWVKGTAEFV--EEGA 90 
                   6689**************7888******************************88887777776..3.....2....3378888********..7777 PP

                   HHHCCCHHHHHSTTT.GGCSB---CCCCCTEEEEEEEEEE CS
  Pyridox_ox_2  98 aealellvekivpgr.wenlrpptrkelkatsvlrlkiee 136
                   +++ +++++k++ ++ +      +++e++   ++r+++++
    KIR64781.1  91 DAHIDKMAQKYLGQEtYP---FGQPGEVRV--IVRITPTQ 125
                   777788899997765455...677888866..88888876 PP

>> Pyrid_ox_like  Pyridoxamine 5'-phosphate oxidase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.7e-07    0.0021      15      91 ..      17      92 ..       7     108 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.7e-07
  Pyrid_ox_like 15 tamLttteadgklksrPMatqkveedgdlwfltkkdsdkvkeirkdsqvnlafsdeskkky..vsvsGtaevvedraki 91
                    a ++t+e dg+ ++ P  +    + +++ f t+k  +k+++i++ + v + ++d+  +++  + v+Gtae+ve+ a +
     KIR64781.1 17 LAHVATIEPDGSPHVTPVWVDT--DGEHIVFNTAKGRQKYNNIQRTPIVAVSVVDKA-NDFrtLWVKGTAEFVEEGADA 92
                   5556666667777777765543..445799***********************9954.45533789*******997654 PP

>> DUF447  Protein of unknown function (DUF447)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.8e-05      0.13       5      64 ..      20      80 ..      20     117 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.8e-05
                EEEE-TT.-EEEEEEEEEESSSEEEEEEETTSHHHHHHHHHSEEEEEE---HHHHHHHHHS CS
      DUF447  5 vtTksek.rpnaaPiGvivkgdkvvlrlfkgsrTleNllengelvinvtdDpllfakaalg 64
                v T +++ +p+++P+ v ++g+ +v+++ kg + ++N+++++ ++++v+d +  f +  ++
  KIR64781.1 20 VATIEPDgSPHVTPVWVDTDGEHIVFNTAKGRQKYNNIQRTPIVAVSVVDKANDFRTLWVK 80
                567888899*****************************************99998777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 921.03
//
Query:       KIR64782.1  [L=796]
Description: daunorubicin resistance protein DrrC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-19   70.0   0.0      9e-10   39.2   0.0    4.1  3  ABC_tran         ABC transporter
    3.4e-06   26.7   1.0      0.022   14.5   0.0    2.8  3  AAA_29           P-loop containing region of AAA domain
    8.6e-06   25.3   0.0        4.4    6.7   0.0    4.1  4  SMC_N            RecF/RecN/SMC N terminal domain
    1.2e-05   25.8   2.6       0.17   12.2   0.2    3.2  4  AAA_16           AAA ATPase domain
    1.7e-05   25.1   6.3     0.0095   16.3   0.3    3.3  3  DnaJ_CXXCXGXG    DnaJ central domain
    3.8e-05   23.6   0.8      0.003   17.5   0.0    2.3  2  RsgA_GTPase      RsgA GTPase
    0.00052   19.9  11.5      0.098   12.4   0.1    3.9  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    0.00094   19.4   0.2        1.2    9.2   0.0    2.7  2  AAA_33           AAA domain
     0.0031   17.3   0.0        6.1    6.5   0.0    3.2  4  AAA_15           AAA ATPase domain
     0.0096   16.3   0.0      0.024   15.0   0.0    1.6  1  UvrA_DNA-bind    UvrA DNA-binding domain
  ------ inclusion threshold ------
      0.011   15.6   6.0        6.3    6.8   1.3    3.5  3  Anti-TRAP        Tryptophan RNA-binding attenuator protein in
      0.011   15.6   0.3        1.6    8.6   0.1    2.3  2  NACHT            NACHT domain
      0.012   16.2   0.0       0.29   11.6   0.0    2.1  2  AAA_23           AAA domain
       0.03   13.9   1.1        7.8    6.0   0.0    3.3  3  AAA_25           AAA domain
      0.032   14.0   0.7        6.4    6.4   0.2    2.7  2  AAA_30           AAA domain
      0.071   12.8   3.1        3.3    7.4   2.3    2.3  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.23   11.0   5.0         19    4.9   0.1    3.4  3  TF_Zn_Ribbon     TFIIB zinc-binding
       0.25   10.9   2.8         11    5.5   0.1    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
       0.56    9.3   1.2         24    4.0   0.5    2.1  2  DUF815           Protein of unknown function (DUF815)
       0.61   10.4   5.2         16    5.9   0.1    3.7  3  zinc_ribbon_9    zinc-ribbon
       0.64   10.3   2.7         24    5.2   0.0    2.8  2  AAA_22           AAA domain
       0.71    9.3   6.8         13    5.2   0.0    3.5  3  zf-TFIIB         Transcription factor zinc-finger
        1.4    9.0   4.4        1.8    8.7   0.5    2.7  2  DUF2752          Protein of unknown function (DUF2752)
        1.7    7.8   4.5        9.2    5.4   1.7    2.1  2  DUF2075          Uncharacterized conserved protein (DUF2075)
        1.8    9.1   4.7         16    6.0   0.5    3.1  3  AAA_18           AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1     2e-05     0.014       1      28 [.      33      60 ..      33      69 .. 0.95
   2 !    9.0   0.0    0.0026       1.8      85     136 ..     352     405 ..     260     406 .. 0.82
   3 !   39.2   0.0   1.3e-12     9e-10       1     137 []     507     715 ..     507     715 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-05
                EEEEEEEEETTSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  1 lknvslklkegekvaivGenGaGKStLl 28
                lk+vs++l + ++++++G +G+GKS+L+
  KIR64782.1 33 LKDVSVDLPKRQLTVFTGVSGSGKSSLV 60
                79************************96 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0026
                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHT..SSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkk..pkllllDEpt 136
                 +++ l+++  ++l    +++   +LSgG+ qrv++ r l +      +++DEpt
  KIR64782.1 352 LHQTLASFVEIGLGYLSLDRPSGTLSGGEAQRVKMLRHLGSPltDVTYVFDEPT 405
                 55555555556666667777779**************99764114467888888 PP

  == domain 3  score: 39.2 bits;  conditional E-value: 1.3e-12
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG......B-HHHCCHCEEEE-SS.--S-TTSBHHHH............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxx.xxxxxxxxxxxx............. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke......qeleslrkeigvlpqe.pqlfpeltvren............. 79 
                 l++v++++  g +v+++G  G+GKS+L+    g     +G + +d+ +++        + + l   ++  + + + ++p                    
  KIR64782.1 507 LRDVDVDIPLGVLVVVTGVAGSGKSSLVH---GSIPAGAGVVSVDQGPIRGsrrsnpATYTGLLDPVRKAFAKaNGVKP------Alfsansegacpgc 596
                 689***********************975...55555566666666666662222123444444444444444344444......244444789999** PP

                 .............................................................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHH CS
                 .............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .............................................................esdeeiekalsklglkelkdtvvksspssLSgGqkqrv 117
                                                                              +++  + ++l++l +++l   ++++  s+LSgG++qr+
  KIR64782.1 597 ngagvvyvdlammagvatvceecegrrfeasvleyrlggrdiaevlampvteareffgdgeARTPAARAILDRLADVGLGYLTLGQPLSTLSGGERQRL 695
                 ****************************************999999999987777777654444449999********9999998888*********** PP

                 HHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 118 alarallkkpkllllDEpta 137
                  la  l ++  +++lDEpta
  KIR64782.1 696 RLATHLGTEGGVYVLDEPTA 715
                 ******************97 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.1e-05     0.022      15      39 ..      36      60 ..      30      68 .. 0.83
   2 !    9.7   0.1     0.001      0.71      17      39 ..     512     534 ..     504     538 .. 0.76
   3 ?   -2.7   0.0       7.2   5.1e+03      39      48 ..     733     742 ..     732     747 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.1e-05
      AAA_29 15 htieidlkgatlltGpsGsGKSTll 39
                 ++++  ++ t++tG sGsGKS+l+
  KIR64782.1 36 VSVDLPKRQLTVFTGVSGSGKSSLV 60
                5566766679*************97 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.001
      AAA_29  17 ieidlkg.atlltGpsGsGKSTll 39 
                 ++i l g  +++tG  GsGKS+l+
  KIR64782.1 512 VDIPL-GvLVVVTGVAGSGKSSLV 534
                 55543.447899**********98 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 7.2
      AAA_29  39 lDAiqalLvp 48 
                 +DA + +Lv 
  KIR64782.1 733 VDAGKSVLVV 742
                 6666666665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.017        12      22      41 ..      41      60 ..      23      80 .. 0.82
   2 ?    4.1   0.0     0.037        27     136     210 ..     375     448 ..     145     453 .. 0.76
   3 ?    4.0   0.0      0.04        29      26      41 ..     519     534 ..     502     538 .. 0.80
   4 !    6.7   0.0    0.0061       4.4     136     209 ..     686     756 ..     584     761 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.017
                TTSSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 22 fsksftaivGpNGSGKsnll 41
                 ++++t+ +G  GSGKs+l+
  KIR64782.1 41 PKRQLTVFTGVSGSGKSSLV 60
                356799***********986 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.037
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvg 210
                 +LSgGe + v +  l  + +      y++De    L  + v+++ +ll + +++   ++v+ ++ ++++ ad++v 
  KIR64782.1 375 TLSGGEAQRVKM--LRHLGSPLTDVTYVFDEPTTGLHPHDVRRMNDLLLRLRDKgNTVLVVEHKPDTIAIADHVVD 448
                 566666543322..222334444557*******************998876666499************9999875 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.04
                 EEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnll 41 
                 + +++G  GSGKs+l+
  KIR64782.1 519 LVVVTGVAGSGKSSLV 534
                 56899*********97 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0061
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklv 209
                 +LSgGe++     L++A++      +y+lDe  a L  + v ++  ll++  +    ++v+ ++  ++++ad +v
  KIR64782.1 686 TLSGGERQ----RLRLATHLGTEGGVYVLDEPTAGLHLADVGQLLGLLDRLVDAgKSVLVVEHHLAVVAHADWVV 756
                 79****98....799999999***************************998877577899988888888887665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00031      0.22      25      50 ..      44      70 ..      29     201 .. 0.72
   2 ?   -2.1   0.0       6.3   4.5e+03     106     127 ..     385     424 ..     322     435 .. 0.55
   3 !   12.2   0.2   0.00024      0.17      24      41 ..     517     534 ..     496     567 .. 0.81
   4 ?   -2.3   0.0       7.1   5.1e+03     144     169 ..     717     741 ..     644     743 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00031
      AAA_16 25 elvllsGesGvGKsslv.rellralek 50
                +l++++G sG+GKsslv  +++ + ++
  KIR64782.1 44 QLTVFTGVSGSGKSSLVfGTVAAESQR 70
                7899*************7555543222 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 6.3
      AAA_16 106 a..................avpelagaeasrllellkrll 127
                 +                  ++  l++ + +r+++ll rl 
  KIR64782.1 385 KmlrhlgspltdvtyvfdePTTGLHPHDVRRMNDLLLRLR 424
                 0444444444444455555555666666677777777766 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00024
      AAA_16  24 pelvllsGesGvGKsslv 41 
                 + lv+++G +G+GKsslv
  KIR64782.1 517 GVLVVVTGVAGSGKSSLV 534
                 3799*************9 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 7.1
      AAA_16 144 lqwadeaslqllaaLlrllesk.pllv 169
                 l+ ad    qll +L rl++++ ++lv
  KIR64782.1 717 LHLADV--GQLLGLLDRLVDAGkSVLV 741
                 444444..4445555555555335555 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0067       4.8      36      54 ..     171     189 ..     154     197 .. 0.65
   2 ?    2.7   0.1      0.24   1.7e+02      15      24 ..     298     307 ..     284     327 .. 0.69
   3 !   16.3   0.3   1.3e-05    0.0095      14      50 ..     590     622 ..     576     627 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0067
  DnaJ_CXXCXGXG  36 fvqqsqstCpeCeGtGkvi 54 
                    +++++   Cp+CeG+G+v 
     KIR64782.1 171 TFTRTGGMCPRCEGRGTVS 189
                    3344556788888887764 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.24
  DnaJ_CXXCXGXG  15 ktCktCkGsG 24 
                    + C++C+G+ 
     KIR64782.1 298 TACPECGGTR 307
                    4566666654 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 1.3e-05
  DnaJ_CXXCXGXG  14 kktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGt 50 
                    +  C+ C+G Gvv +       ++  + + C+eCeG+
     KIR64782.1 590 EGACPGCNGAGVVYVDL----AMMAGVATVCEECEGR 622
                    557********654443....25556789******97 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.1e-06     0.003      74     117 ..      17      61 ..       3      84 .. 0.80
   2 ?    4.2   0.1      0.05        36     101     117 ..     519     535 ..     498     554 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.1e-06
                  HTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHH CS
  RsgA_GTPase  74 algyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLin 117
                  a g +v+ v+  ++++l++++  l + +++v+ G SG GKS+L+ 
   KIR64782.1  17 AGGHDVIRVRGARENNLKDVSVDLPKrQLTVFTGVSGSGKSSLVF 61 
                  55788999999999*********9998****************85 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.05
                  EEEEECSTTSSHHHHHH CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLin 117
                  ++v+ G  G GKS+L+ 
   KIR64782.1 519 LVVVTGVAGSGKSSLVH 535
                  68999**********96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.9      0.11        76       1      15 [.      45      59 ..      45      60 .. 0.94
   2 !    9.5   0.0    0.0011      0.77     260     295 ..     398     433 ..     369     441 .. 0.79
   3 ?   -0.9   0.7       1.6   1.2e+03       2      15 ..     520     533 ..     519     534 .. 0.89
   4 !   12.4   0.1   0.00014     0.098     233     284 ..     683     731 ..     651     747 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.11
      AAA_21  1 lnvliGpNgsGKSnL 15
                l+v++G  gsGKS+L
  KIR64782.1 45 LTVFTGVSGSGKSSL 59
                79***********98 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0011
      AAA_21 260 llliDEpEngLHPkllrrllellkelsrngaQvilt 295
                 ++++DEp +gLHP+ +rr  +ll +l+++g  v+++
  KIR64782.1 398 TYVFDEPTTGLHPHDVRRMNDLLLRLRDKGNTVLVV 433
                 689**********98888888888887777777765 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.6
      AAA_21   2 nvliGpNgsGKSnL 15 
                  v++G  gsGKS+L
  KIR64782.1 520 VVVTGVAGSGKSSL 533
                 7999********98 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 0.00014
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellke 284
                 p++ lS G ++ l+l+t l       +++++DEp +gLH + +  ll+ll++
  KIR64782.1 683 PLSTLSGGERQRLRLATHLGTEG---GVYVLDEPTAGLHLADVGQLLGLLDR 731
                 77889***************988...*************9766666666654 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0066       4.8       1      21 [.      45      65 ..      45     115 .. 0.85
   2 !    9.2   0.0    0.0017       1.2       1      32 [.     519     549 ..     519     588 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0066
      AAA_33  1 lvllvGlpGsGKstlaerllk 21
                l+++ G++GsGKs l+ + ++
  KIR64782.1 45 LTVFTGVSGSGKSSLVFGTVA 65
                6799*********99877664 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0017
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdt 32 
                 lv++ G++GsGKs l+++ + + ga ++s d+
  KIR64782.1 519 LVVVTGVAGSGKSSLVHGSI-PAGAGVVSVDQ 549
                 799**************988.66766666665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1      0.01       7.5      14      39 ..      33      59 ..      31      61 .. 0.93
   2 !    6.5   0.0    0.0085       6.1     324     357 ..     396     429 ..     388     440 .. 0.86
   3 ?   -0.1   0.0      0.83     6e+02      16      40 ..     511     534 ..     505     536 .. 0.82
   4 ?   -3.1   0.0       6.6   4.7e+03     326     356 ..     707     737 ..     697     745 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.01
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsi 39
                lkdv++dl +  ltv+ G  +sGKSs+
  KIR64782.1 33 LKDVSVDLPKRqLTVFTGVSGSGKSSL 59
                899*****9999**************8 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0085
      AAA_15 324 nvilliEEPEahLHpqaqkvlikllkelandnkt 357
                  v+++++EP + LHp   + + +ll++l ++++t
  KIR64782.1 396 DVTYVFDEPTTGLHPHDVRRMNDLLLRLRDKGNT 429
                 5789************************999984 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.83
      AAA_15  16 dveidlseeltvliGkNnsGKSsil 40 
                 dv+i+l   l v+ G  +sGKSs++
  KIR64782.1 511 DVDIPLGV-LVVVTGVAGSGKSSLV 534
                 37788888.9*************97 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 6.6
      AAA_15 326 illiEEPEahLHpqaqkvlikllkelandnk 356
                 +++++EP a LH     +l  ll +l++ +k
  KIR64782.1 707 VYVLDEPTAGLHLADVGQLLGLLDRLVDAGK 737
                 799*********9888888888888777766 PP

>> UvrA_DNA-bind  UvrA DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.3e-05     0.024       8     105 ..     198     284 ..     192     288 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.3e-05
                    -----------GGG...TT-HHHHHHHHHHHTTTS------------S-THHHHH----...................---HHHHHHHHHH----- CS
  UvrA_DNA-bind   8 dpslslaegAiapw.sskkssyyrqlleavaehygidldtpfkeLpeeqkdilLyGsgeekikveyksggrkrsyektfeGvipnlerryreteSe 102
                    d+s+s+a+gAi +  ++ +s +   +++  ae    d ++p++e+++++++ +L+ + +         + ++  ++ t+eG+ip++++ +  ++ e
     KIR64782.1 198 DDSKSIAQGAITIPgWKADSFW---TVRVYAESGFLDPHKPIREFTAQERHDFLHREPT---------RVKVEGVNLTYEGLIPKVQKSFLAKDRE 281
                    99********987634555544...56666777788*******************9998.........45678899***********999988888 PP

                    --H CS
  UvrA_DNA-bind 103 avr 105
                    a++
     KIR64782.1 282 AMQ 284
                    775 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.021        15      28      42 ..     174     188 ..     161     198 .. 0.74
   2 ?    3.3   0.0      0.11        79      32      41 ..     299     308 ..     292     317 .. 0.80
   3 ?    6.8   1.3    0.0088       6.3      10      40 ..     590     623 ..     586     627 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.021
                 ....E-TTTTTSSEE CS
   Anti-TRAP  28 rasleCPkCsGkgli 42 
                 r++  CP+C+G+g +
  KIR64782.1 174 RTGGMCPRCEGRGTV 188
                 55566******9987 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.11
                 E-TTTTTSSE CS
   Anti-TRAP  32 eCPkCsGkgl 41 
                  CP+C+G  l
  KIR64782.1 299 ACPECGGTRL 308
                 69***99876 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0088
                 EEE-TTTTTTSEETTE.........E-TTTTTSS CS
   Anti-TRAP  10 EtkCdaCngsGkiepe...eprasleCPkCsGkg 40 
                 E +C+ Cng+G +  +     + +  C +C+G+ 
  KIR64782.1 590 EGACPGCNGAGVVYVDlamMAGVATVCEECEGRR 623
                 789********98877644556667899999975 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.031        22       3      31 ..      46      74 ..      44     130 .. 0.65
   2 ?    8.6   0.1    0.0022       1.6       2      18 ..     519     535 ..     518     540 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.031
                EEEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT  3 vilqGeaGsGKTtLlqklalawaegklpq 31
                 + +G +GsGK+ L+ + + a  ++  ++
  KIR64782.1 46 TVFTGVSGSGKSSLVFGTVAAESQRLINE 74
                6889**********987666555555444 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0022
                 CEEEEC-TTTCHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlq 18 
                 lv+++G aGsGK+ L++
  KIR64782.1 519 LVVVTGVAGSGKSSLVH 535
                 699************97 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0004      0.29      10      35 ..      33      59 ..      25      60 .. 0.90
   2 ?    2.1   0.0      0.34   2.4e+02      21      36 ..     519     534 ..     497     536 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0004
      AAA_23 10 frdqeidF.skgltlItGpNGaGKTTi 35
                ++d+++d+ ++ lt++tG  G+GK+++
  KIR64782.1 33 LKDVSVDLpKRQLTVFTGVSGSGKSSL 59
                57889999899**************98 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.34
      AAA_23  21 ltlItGpNGaGKTTil 36 
                 l+++tG  G+GK++++
  KIR64782.1 519 LVVVTGVAGSGKSSLV 534
                 7899**********96 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.011       7.8      30      56 ..      40      66 ..      21      72 .. 0.85
   2 ?    4.6   0.0      0.03        21      30      50 ..     514     534 ..     500     541 .. 0.89
   3 ?   -2.2   0.2       3.7   2.7e+03     164     190 ..     721     747 ..     720     755 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.011
      AAA_25 30 lpagelallaGapgtGKttlaldlala 56
                lp+  l++++G +g+GK+ l+   ++a
  KIR64782.1 40 LPKRQLTVFTGVSGSGKSSLVFGTVAA 66
                699*****************9887765 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.03
      AAA_25  30 lpagelallaGapgtGKttla 50 
                 +p+g l++++G  g+GK+ l+
  KIR64782.1 514 IPLGVLVVVTGVAGSGKSSLV 534
                 79****************986 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.7
      AAA_25 164 dvgalvealeriarrtgaavllvhHvg 190
                 dvg+l+  l+r+ ++ +  +++ hH++
  KIR64782.1 721 DVGQLLGLLDRLVDAGKSVLVVEHHLA 747
                 566777777777666666666666654 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0      0.03        22      18      41 ..      43      66 ..      39      78 .. 0.83
   2 ?    6.4   0.2    0.0089       6.4      20      36 ..     519     535 ..     516     540 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.03
      AAA_30 18 drvavltGpAGtGKttalkalrea 41
                ++++v tG+ G+GK+ ++ + ++a
  KIR64782.1 43 RQLTVFTGVSGSGKSSLVFGTVAA 66
                6799***********998776655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0089
      AAA_30  20 vavltGpAGtGKttalk 36 
                 ++v+tG+AG+GK+ ++ 
  KIR64782.1 519 LVVVTGVAGSGKSSLVH 535
                 789**********9875 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.048        34       2      19 ..      47      64 ..      46     108 .. 0.69
   2 ?    7.4   2.3    0.0047       3.3       2      15 ..     521     534 ..     520     547 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.048
  Viral_helicase1  2 vvhGvpGcGKStlirkll 19
                     v  Gv G+GKS+l+   +
       KIR64782.1 47 VFTGVSGSGKSSLVFGTV 64
                     789********9975555 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0047
  Viral_helicase1   2 vvhGvpGcGKStli 15 
                      vv Gv+G+GKS+l+
       KIR64782.1 521 VVTGVAGSGKSSLV 534
                      9**********986 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.18   1.3e+02       2      14 ..     178     190 ..     177     197 .. 0.80
   2 ?    4.9   0.1     0.026        19       3      10 ..     300     307 ..     298     314 .. 0.84
   3 ?    4.1   0.5     0.047        33       3      26 ..     593     621 ..     591     633 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.18
                   EETTTTCEECHEE CS
  TF_Zn_Ribbon   2 kCPnCgstnlveD 14 
                   +CP C ++ +v D
    KIR64782.1 178 MCPRCEGRGTVSD 190
                   8****99877777 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.026
                   ETTTTCEE CS
  TF_Zn_Ribbon   3 CPnCgstn 10 
                   CP+Cg+t+
    KIR64782.1 300 CPECGGTR 307
                   *****996 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.047
                   ETTTTCEE.CHEE..TSTTCE.EESSS.S CS
  TF_Zn_Ribbon   3 CPnCgstn.lveD..pergel.vCtdC.G 26 
                   CP C++   +++D   + g   vC++C G
    KIR64782.1 593 CPGCNGAGvVYVDlaMMAGVAtVCEECeG 621
                   9999999988999986666656*****66 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.016        11       2      24 ..      45      67 ..      44      76 .. 0.82
   2 ?    5.2   0.5      0.02        14       3      19 ..     520     536 ..     518     545 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.016
                EEEEEESTTCCHHHHHHHHHCT- CS
        cobW  2 vtvltGflGsGKTtLlnhllenr 24
                 tv+tG  GsGK++L+  +++ +
  KIR64782.1 45 LTVFTGVSGSGKSSLVFGTVAAE 67
                589************98888554 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.02
                 EEEEESTTCCHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnh 19 
                 +v+tG  GsGK++L+  
  KIR64782.1 520 VVVTGVAGSGKSSLVHG 536
                 79************975 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.044        32      57      77 ..      47      67 ..      29      74 .. 0.80
   2 ?    4.0   0.5     0.034        24      56      72 ..     520     536 ..     517     542 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.044
      DUF815 57 LLwGarGtGKSslvkallney 77
                +++G  G+GKSslv  ++++ 
  KIR64782.1 47 VFTGVSGSGKSSLVFGTVAAE 67
                579**********98776654 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.034
      DUF815  56 vLLwGarGtGKSslvka 72 
                 v+++G  G+GKSslv+ 
  KIR64782.1 520 VVVTGVAGSGKSSLVHG 536
                 6789***********96 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.33   2.3e+02      23      29 ..     178     184 ..     166     188 .. 0.78
   2 ?    5.9   0.1     0.022        16      22      30 ..     298     306 ..     284     310 .. 0.65
   3 ?    2.2   0.1      0.31   2.2e+02      20      29 ..     589     598 ..     583     602 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.33
  zinc_ribbon_9  23 lCPhCgg 29 
                    +CP+C+g
     KIR64782.1 178 MCPRCEG 184
                    7****98 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.022
  zinc_ribbon_9  22 vlCPhCggg 30 
                    ++CP+Cgg 
     KIR64782.1 298 TACPECGGT 306
                    48*****96 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.31
  zinc_ribbon_9  20 sdvlCPhCgg 29 
                    s+ +CP C+g
     KIR64782.1 589 SEGACPGCNG 598
                    4446****98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.033        24       5      21 ..      43      59 ..      40      76 .. 0.90
   2 ?    3.5   1.0      0.11        79       8      22 ..     520     534 ..     517     536 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.033
      AAA_22  5 agilvvtGesGtGKTtl 21
                ++++v tG sG+GK+ l
  KIR64782.1 43 RQLTVFTGVSGSGKSSL 59
                7899***********87 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.11
      AAA_22   8 lvvtGesGtGKTtll 22 
                 +vvtG +G+GK+ l+
  KIR64782.1 520 VVVTGVAGSGKSSLV 534
                 79**********986 PP

>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1       0.2   1.4e+02      22      27 ..     179     184 ..     177     196 .. 0.81
   2 ?    5.2   0.0     0.018        13      15      28 ..     293     306 ..     278     311 .. 0.74
   3 ?    3.1   1.0      0.08        57       2      28 ..     593     622 ..     592     630 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.2
    zf-TFIIB  22 CpqCrG 27 
                 Cp+C+G
  KIR64782.1 179 CPRCEG 184
                 777777 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.018
    zf-TFIIB  15 ggveidyCpqCrGv 28 
                 + v++  Cp+C+G 
  KIR64782.1 293 RAVTFTACPECGGT 306
                 5688999*****95 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.08
    zf-TFIIB   2 CPkCqdele...eserggveidyCpqCrGv 28 
                 CP C+ + +   ++        +C++C+G 
  KIR64782.1 593 CPGCNGAGVvyvDLAMMAGVATVCEECEGR 622
                 999988655444444466788899999996 PP

>> DUF2752  Protein of unknown function (DUF2752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.5    0.0025       1.8       4      19 ..     293     308 ..     293     312 .. 0.87
   2 ?    0.4   0.3      0.97   6.9e+02      11      16 ..     593     598 ..     585     603 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0025
     DUF2752   4 kaltGipCPGCGltRa 19 
                 +a+t   CP CG+tR 
  KIR64782.1 293 RAVTFTACPECGGTRL 308
                 5789999********5 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.97
     DUF2752  11 CPGCGl 16 
                 CPGC +
  KIR64782.1 593 CPGCNG 598
                 ****86 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.063        45       2      25 ..      44      67 ..      43      88 .. 0.70
   2 ?    5.4   1.7     0.013       9.2       3      17 ..     519     533 ..     517     538 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.063
     DUF2075  2 avvlVtGvaGtGKtvvllnllael 25
                ++ + tGv+G+GK+ + +  +a+ 
  KIR64782.1 44 QLTVFTGVSGSGKSSLVFGTVAAE 67
                67788********98777665543 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.013
     DUF2075   3 vvlVtGvaGtGKtvv 17 
                 +v+VtGvaG+GK+ +
  KIR64782.1 519 LVVVTGVAGSGKSSL 533
                 79**********965 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.3      0.18   1.3e+02       3      14 ..      48      59 ..      47      67 .. 0.90
   2 ?    6.0   0.5     0.023        16       1      14 [.     520     533 ..     520     535 .. 0.90
   3 ?   -2.0   0.0       6.8   4.9e+03      72      91 ..     735     754 ..     703     780 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.18
      AAA_18  3 ltGtpGvGKttl 14
                 tG++G+GK++l
  KIR64782.1 48 FTGVSGSGKSSL 59
                79********98 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.023
      AAA_18   1 IlltGtpGvGKttl 14 
                 +++tG++G+GK++l
  KIR64782.1 520 VVVTGVAGSGKSSL 533
                 79**********98 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 6.8
      AAA_18  72 eegknlvidghlaeleseaa 91 
                 +  ++lv++ hla    +++
  KIR64782.1 735 AGKSVLVVEHHLAVVAHADW 754
                 44466688888776655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.48
# Mc/sec: 4963.86
//
Query:       KIR64783.1  [L=154]
Description: LigA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-22   78.0   0.1    8.1e-22   77.7   0.1    1.1  1  F420H2_quin_red  F420H(2)-dependent quinone reductase
  ------ inclusion threshold ------
      0.046   13.9   0.1      0.067   13.3   0.1    1.3  1  DUF2255          Uncharacterized protein conserved in bacteri
      0.079   13.2   0.0       0.15   12.3   0.0    1.5  1  Putative_PNPOx   Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> F420H2_quin_red  F420H(2)-dependent quinone reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.1   1.4e-25   8.1e-22      17     130 .]      39     151 ..      21     151 .. 0.84

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 1.4e-25
                      TTXTTS---EEEEEE-TTT-SEEEEEEEEEEETTEEEEE-SGGGGSSS-HHHHHHHH--EEEEEETTEEEEEEEEE--HHHHHHHHHHHHHH-T CS
  F420H2_quin_red  17 grrlegvpvllLtttGrktgkprktplgfvrdgdsylvvaskgGapkhpswylNlkanPrvevqvgakkldvtAreveddekarlwklvvensp 110
                      g+r+ +   l L+ttGr++g+pr   +g+ rdgd+++  a +g +   p w lNl+a+Pr+ v  g++ ++vtA+ ++++e++rlw+ + + + 
       KIR64783.1  39 GGRFGM---LRLHTTGRRSGRPRAVIVGYIRDGDRLVTLAMNGWDAADPAWWLNLQAHPRATVDLGGESREVTAHRATGAERDRLWSALHD-YR 128
                      455544...789**************************************************************************98865.44 PP

                      HHHH...HHHHHSSTS-EEEEE- CS
  F420H2_quin_red 111 sYad...yqsktdreipvvVlep 130
                      +Y d    +++ +r+  +vVl+p
       KIR64783.1 129 GYGDldgLAAHRGRDTAIVVLTP 151
                      45441116778888888888875 PP

>> DUF2255  Uncharacterized protein conserved in bacteria (DUF2255)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.1e-05     0.067      25      79 ..      59     116 ..      45     145 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
     DUF2255  25 pttiWvVrvdddlyvrsanG...raskWyraalaqkagriraggvekdVtfeeeadke 79 
                 ++ +  +r++d+l   ++nG    + +W+ + +a+ ++ + +gg +++Vt + ++ +e
  KIR64783.1  59 AVIVGYIRDGDRLVTLAMNGwdaADPAWWLNLQAHPRATVDLGGESREVTAHRATGAE 116
                 566677899999998888884435668***********************99755444 PP

>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.5e-05      0.15      19      64 ..      50      98 ..      42     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.5e-05
                    EEETTSEEEEEEEEEEEETTTTEEEEEEE....TTSHHHHHHHHH-EEEE CS
  Putative_PNPOx 19 TvdedGrPnvspvllkagdgrdgivfatn....adsrklrnleenprval 64
                    T +++GrP +++v+++++ +r + ++a n    ad + + nl+++pr+++
      KIR64783.1 50 TGRRSGRPRAVIVGYIRDGDR-LVTLAMNgwdaADPAWWLNLQAHPRATV 98
                    55689***********99999.44444331111567999********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1097.53
//
Query:       KIR64784.1  [L=264]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-19   69.7   0.0    3.7e-19   69.0   0.0    1.3  1  TetR_C_1  Tetracyclin repressor-like, C-terminal domain
    1.5e-08   34.2   0.2    3.7e-08   33.0   0.2    1.7  1  TetR_N    Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.033   14.0   0.0    1.6  1  HTH_38    Helix-turn-helix domain
      0.088   12.6   1.3       0.29   11.0   0.1    2.3  2  HTH_23    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> TetR_C_1  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   8.3e-23   3.7e-19       7     144 ..     119     258 ..     113     259 .. 0.83

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 8.3e-23
                 -HHHHHHHHHHHHHHHHHTSTTHHHHHHT-SS--HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHSTT--S.TT-HHHHHHH-- CS
    TetR_C_1   7 dWrerlrelarslrrallrhrdlarlfagtprlspnelrgmErlLrllrdaGlsdedavyalslisnFvvGavleeqsgledaeer.aeqeavleeale 104
                 +W ++lr+l+++ rr++lrh++ ar++ +++ + p+ lr +Er+L++lr +G s + + +al l+ + ++G+  +     +d+ ++ ae++a +++ +e
  KIR64784.1 119 PWTDQLRALIMRARRTMLRHPWAARVLEARDTPTPAVLRHIERVLAVLRGGGCSVSLSHHALHLLGSRILGFSQDLFDDSPDTPATeAETAAQAAAWAE 217
                 7***********************************************************************955544334444330333333333333 PP

                 TTT-HH...HHHHHH...HHT---HHHHHHHHHHHHHHHHHHH CS
    TetR_C_1 105 pgeypl...laealelaeiltsedsdaaFefGLellldGleal 144
                   + p+   la a+++  +l+  d ++ F+f+L+ll++Gl ++
  KIR64784.1 218 --SMPHiaeLAVAVSHSGALGGCDDEDEFAFALDLLIEGLDRR 258
                 ..5777666999999999**********************986 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.2   8.2e-12   3.7e-08       1      47 []      22      68 ..      22      68 .. 0.98

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 8.2e-12
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                I++aA  l  + G +++++r++A+++Gv + ++Y++ ++K+ Ll+a+
  KIR64784.1 22 IVAAAIGLADRDGLAGLSMRRLAQHLGVDAMSIYYHLRDKDTLLAAM 68
                899*****************************************996 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   7.3e-06     0.033      19      42 ..      36      59 ..      35      60 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.3e-06
      HTH_38 19 eGlslreIArrLgrspsTIsRElk 42
                +Gls+r+ A++Lg++  +I+++l+
  KIR64784.1 36 AGLSMRRLAQHLGVDAMSIYYHLR 59
                79*******************997 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   6.4e-05      0.29       4      36 ..      20      56 ..      17      61 .. 0.84
   2 ?   -0.6   0.2      0.28   1.2e+03       3      16 ..     121     134 ..     119     144 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.4e-05
      HTH_23  4 ereRlrillllae....GlsvreIAreLgvsrrTvyr 36
                e + + ++ l+++    Gls r+ A++Lgv  + +y 
  KIR64784.1 20 EAIVAAAIGLADRdglaGLSMRRLAQHLGVDAMSIYY 56
                66678899999988999***************99994 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.28
      HTH_23   3 sereRlrillllae 16 
                 + + R++i+++ + 
  KIR64784.1 121 TDQLRALIMRARRT 134
                 67999***999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1765.68
//
Query:       KIR64785.1  [L=359]
Description: DNA repair protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-42  143.2   0.0    1.3e-41  142.6   0.0    1.2  1  Ku           Ku70/Ku80 beta-barrel domain
  ------ inclusion threshold ------
        3.1    7.6  11.6        4.2    7.2  11.6    1.2  1  SRP-alpha_N  Signal recognition particle, alpha subunit, N-te
        4.6    7.6  17.1        6.4    7.2  17.1    1.2  1  DUF4604      Domain of unknown function (DUF4604)


Domain annotation for each model (and alignments):
>> Ku  Ku70/Ku80 beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6   0.0   2.1e-45   1.3e-41       2     186 ..      11     177 ..      10     190 .. 0.93

  Alignments for each domain:
  == domain 1  score: 142.6 bits;  conditional E-value: 2.1e-45
          Ku   2 gggvsipVklykateeakkpkfkkldketnepvkvetkyvcsdtge.vdeedivkgyey.GgevvpltkeelekiksfdskglkllgFvplseilkeyl 98 
                 +g+vsi+Vkly+atee k+++f+++++e++   ++++k++cs +ge v ++di kgy + Gge+v+lt+e+++ ++ ++s+ +++l+Fvp+++++++ +
  KIR64785.1  11 FGLVSIAVKLYSATEE-KDIRFHQVHREDGG--RIRYKRTCSVCGEeVTYDDIAKGYDIgGGEMVILTDEDFADLPLTTSRAIDVLEFVPAEQVDPILY 106
                 799************9.**************..***********777*************99************99977******************** PP

          Ku  99 sikssyfiyPddkdekgstkafsaLveamleskkvaivrfvlrskskprlvaLvPqeeelsseeekeglvlvtLpfaddiRslkfpsl 186
                   +++yf+ P    e+++tk + +L++a+ +s++vaiv+++lr++++  l+ L+++       e  ++l+l+t+ ++d++R+++f +l
  KIR64785.1 107 --NKAYFLEP----EGAATKPYVLLRDALADSERVAIVKVALRQREQ--LATLRVR-------E--GVLLLNTMLWPDEVRTPDFGFL 177
                 ..99******....778889***************************..*******.......2..4******************999 PP

>> SRP-alpha_N  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  11.6   0.00071       4.2      89     225 ..     206     354 ..     186     359 .] 0.29

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00071
                  .HHHHHHHHHHHHXXXXXXXXX........XXX..XXXXXXXXXX.....XX.XX...........................XXXXXXX...XXXXXX CS
  SRP-alpha_N  89 yFdeyFdqllrelEasaeaakkskaakepkamksfeeskkskktvksskedkkpe................gkkkkgakkekdasddstpsatpetsr 170
                   F++++++ l+e+ +++ + ++  a  e+ ++ +  + +  +  ++s +++++++                +   +++k+    ++  +++++p++++
   KIR64785.1 206 VFTDDYRAALQEVIDAKVEGREVVA-PEEVEEAPAAAVDLMAALKASVERARAARgeqperggeptpitsaR---SAQKA----TKAAKEAKAPARKS 295
                  3888888888776555554433222.2111111111111111111111111111110011111122221110...11111....11111111111111 PP

                  XXXXXXXXXXX.XXX.XXXXXXXXX......XXXXX..XXXX.XXXXXXX....XXXXXXX. CS
  SRP-alpha_N 171 pstpsglltakeagptaedvsrrar......kkankkrssag.assgdeakasksskkkkkk 225
                  ++++   ++ak++g t++ +   a+      k+a +k+++++  ++++++++++++ +kk++
   KIR64785.1 296 AEKK---AAAKKTGGTGGGTAGGAKatggtqKAAPGKATTKAaGAKAEKKAPARKAAPKKAA 354
                  1111...1111111111111111111111112222222222213333333344444444444 PP

>> DUF4604  Domain of unknown function (DUF4604)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  17.1    0.0011       6.4      44     160 ..     226     352 ..     196     358 .. 0.43

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0011
     DUF4604  44 s.....eeeDeaPqV.VvlkeGkhlsaeevevekdaakgkekeeeeeeeeegeeaeediefkkpkkasikeka...sslaaksskkkkkgkvvgeedee 133
                 +     ee +eaP   V+l     l +  ve+++  a+g+++e+  e+++ +  +++++ +k+ k+a     +    ++a k++ +kk g   g+ +  
  KIR64785.1 226 RevvapEEVEEAPAAaVDL-M-AAL-KASVERARA-ARGEQPERGGEPTPITSARSAQKATKAAKEA-----KapaRKSAEKKAAAKKTGGTGGGTAGG 315
                 1555656667775541444.3.335.555655555.3333323333333333333332222222222.....123333333334444443333333322 PP

     DUF4604 134 eed..........kskakkkekekkkakkkkkkkkkk 160
                 ++           k+++k+  ++++k++  +k++ kk
  KIR64785.1 316 AKAtggtqkaapgKATTKAAGAKAEKKAPARKAAPKK 352
                 2224445444444333333334444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2576.22
//
Query:       KIR64786.1  [L=313]
Description: DNA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-27   94.5   0.0    3.3e-26   92.2   0.0    1.9  1  DNA_ligase_A_M   ATP dependent DNA ligase domain
    2.5e-22   79.3   0.0    4.3e-22   78.6   0.0    1.4  1  DNA_ligase_A_C   ATP dependent DNA ligase C terminal region
    0.00066   19.7   0.1     0.0013   18.7   0.1    1.5  1  DNA_ligase_OB_2  DNA ligase OB-like domain
  ------ inclusion threshold ------
      0.048   13.5   0.0        3.3    7.5   0.0    2.2  2  mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain
      0.054   13.8   0.0      0.072   13.4   0.0    1.2  1  RNA_ligase       RNA ligase


Domain annotation for each model (and alignments):
>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.0   9.2e-30   3.3e-26      19     204 .]      19     193 ..       8     193 .. 0.86

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 9.2e-30
                     TSEEEEEEEESSEEEEEEEETTEEEEEETTS-B-GGGCHHHHHHHHHHBSTTESEEEEEEEEEEEETTTTCBEHHHHHCHHHHCHCCTHHHHHHS CS
  DNA_ligase_A_M  19 ekafivEiKyDGeRaqvhkegdkvklfSRrlkditaakpelvkalkeafkkdeksvilDGElvavdketgeilpfqklasrkkkkkkveeklkea 113
                     ++++ +E K+DG+Ra  +  g++  l+ R++ +itaa+pel+  +++ ++    +++lDGE+v++d++ +  +     + ++++  k ++++ ++
      KIR64786.1  19 GEDWAYEFKWDGVRALADIVGGRQHLYARSGVQITAAYPELITLAEQ-VD----DALLDGEVVLLDQAGQPSFTALAERMHVRNPAKAARLAASV 108
                     67899************************************876533.33....479********999766666666666667777899999*** PP

                     EEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BTTTEEE--EEEESSHHHHHHHHHHHHHTTECEEEEEETT-CC-TTCEEEEEEEEE CS
  DNA_ligase_A_M 114 elclfvFDiLyldgesltdeplkeRrklLeeilkesedrvelaeslevkdveeleelleeaiseglEGlvvKnpdskYepgkrsknwlKvK 204
                     ++ +++FD+L l g +lt +p +eRr lLe +      r+      +     +  + +e a ++glEG+++K + s Y+pg rs +w+KvK
      KIR64786.1 109 PVTYLIFDLLRLRGADLTGRPWRERRDLLEGLG-LGGARW-----AVPPVFADGPATYEAAGEHGLEGVMAKRAGSAYRPGVRSPDWVKVK 193
                     *******************************99.445555.....555556677899*********************************9 PP

>> DNA_ligase_A_C  ATP dependent DNA ligase C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.0   1.2e-25   4.3e-22       3      99 .]     210     304 ..     208     304 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 1.2e-25
                     GSEEEEEEEEEE.TTEEEEEEEE-SS--HHHHHHHHHHHGGGEECTTCESS---HHHHTT.EEE-TT-EEEEEESEEECTSSSTTEECT-EEEEE CS
  DNA_ligase_A_C   3 glvgslllgvyd.dgkleyvgkvgtGfsdaeleelrkklkelerkkppfaekvpeeekrd.vWvePelvveVkfaeitasgkykaslRfPrfkrl 95 
                     +++g ll+gv + dg+l+y g+vg G+ +a  +el ++l++l+  ++pfa++vp+e++r   Wv+Pe+vveVk+ + t++g    +lRfPr++rl
      KIR64786.1 210 RKIGGLLVGVPRpDGRLTYRGRVGGGIGAALERELLRELEPLRAGSSPFAGDVPREDARGaIWVDPEVVVEVKYGQRTPDG----RLRFPRVLRL 300
                     789******************************************************9999********************....********** PP

                     -TTS CS
  DNA_ligase_A_C  96 ReDk 99 
                     R+Dk
      KIR64786.1 301 RPDK 304
                     ***8 PP

>> DNA_ligase_OB_2  DNA ligase OB-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   3.7e-07    0.0013      43      66 .]     278     301 ..     273     301 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.7e-07
                      EEEEEEE-TTSSSS-EEEEEEEE- CS
  DNA_ligase_OB_2  43 iitykyqeltskgvpRfPsflrvR 66 
                      ++++ky + t +g +RfP++lr+R
       KIR64786.1 278 VVEVKYGQRTPDGRLRFPRVLRLR 301
                      79********************98 PP

>> mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.013        46      55      81 ..      54      77 ..      20      90 .. 0.66
   2 ?    7.5   0.0   0.00092       3.3      91     119 ..     110     138 ..     103     139 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.013
                     ST-BTTSSSSTCTSBGGSEEEEEEEEE CS
  mRNA_cap_enzyme 55 lrfprekdkeklekvldetllDgElvi 81
                       +p+      l +  d++llDgE+v+
       KIR64786.1 54 AAYPELIT---LAEQVDDALLDGEVVL 77
                     34555553...678899********97 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00092
                      EEEEEEEEEEETTEEGTTSBHHHHHHHHH CS
  mRNA_cap_enzyme  91 lryliyDivaingvtvaeeplskRleilk 119
                      + yli+D++++ g +++ +p  +R ++l+
       KIR64786.1 110 VTYLIFDLLRLRGADLTGRPWRERRDLLE 138
                      57********************9988775 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     2e-05     0.072      58     161 .]      66     193 ..      31     193 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2e-05
                 ECCEEEEEEEES.......SS..TTSS..........................EEEEEEEEEEE.CTTBECE--HHHHHHHHHCCT.......B..EEE CS
  RNA_ligase  58 neelilyGElig......hsikygglpk.........................efyvFdifdir.dkeeqrylspdevealakglg.......tvpvly 117
                 + +  l GE++       +        +                          ++ Fd++ +r    + +  +++e+++l++glg         pv+ 
  KIR64786.1  66 VDDALLDGEVVLldqagqP--------SftalaermhvrnpakaarlaasvpvTYLIFDLLRLRgA--DLTGRPWRERRDLLEGLGlggarwaVPPVFA 154
                 4457788888885544442........122233333344445667777777778899**9999976..445559*********9989999997777887 PP

                 EE.SS.HHHHHCCC.HHHHTC--EEEEEESSSSBE.TTE.BSEEEEE CS
  RNA_ligase 118 egkfl.aaeellelllskgnkrEGlVikpeselyk.nkg.raifKvk 161
                  g+++ +  +        ++  EG+  k + + y+  ++  +++Kvk
  KIR64786.1 155 DGPATyE--A------AGEHGLEGVMAKRAGSAYRpGVRsPDWVKVK 193
                 7777531..1......366799***************99******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2136.32
//
Query:       KIR64787.1  [L=304]
Description: ATP-dependent DNA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2514.42
//
Query:       KIR64788.1  [L=963]
Description: CRISPR-associated protein Cas3 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-43  147.0   0.5    1.3e-42  146.2   0.5    1.5  1  HD_6        HD domain
    3.3e-21   75.8   0.0    1.1e-20   74.1   0.0    1.9  1  Cas3_C      Cas3 C-terminal domain
    1.3e-07   31.5   0.0    9.5e-07   28.7   0.0    2.1  1  DEAD        DEAD/DEAH box helicase
     0.0015   18.8   0.0     0.0064   16.8   0.0    1.9  2  Helicase_C  Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.095   13.0   0.0        0.2   12.0   0.0    1.4  1  AAA_19      AAA domain


Domain annotation for each model (and alignments):
>> HD_6  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.2   0.5   3.5e-46   1.3e-42       1     196 []      15     230 ..      15     230 .. 0.89

  Alignments for each domain:
  == domain 1  score: 146.2 bits;  conditional E-value: 3.5e-46
                 EEEETTSTTS..EEEHHHHHHHHHHHHHHHHHHTS-H.HHHHC....TS-HHHHHHHHHHHHHCCCGGGSSHHHHTTS----TTS-.....-GGGT... CS
        HD_6   1 WgKadkeeeeeawhpLvaHllDvaavaealldkwlsl.larll.r..gleeealrrllaflaalHDlGKaspaFqakvpelaekleeaglelekel... 92 
                 WgK++++++   w+pL  Hl+D+a va++l+d wl++ ++r++ +      ++ rrl+ +la++HD+GKa+paF  +v++l ++++++g+ ++++    
  KIR64788.1  15 WGKTNRDRGF--WLPLHRHLADSADVAGLLWDMWLPEsVRRRIaAplPGGADDGRRLVRWLAGIHDIGKATPAFAWQVKHLRQAMQDHGFVFDRQVedk 111
                 *****99886..************************99666664467999*******************************************999998 PP

                 .----HHHHHHHHHH...........HHHHHHHHHHHTTTS---HHHHHTSS-HHHHTT....HHHHHHHHHHHHHHHHCT-TTS-S......---HHH CS
        HD_6  93 .ekarHdslgaalle...........evarslaaavggHHGkppkeeeekaekkssaae....dweeaqkelleaaaeflgaaaalllelaelelskaa 175
                    a+H+ +g++ l            ++a+++a +vggHHG+pp++ + ka +++ +       w e+++ell+++  +++ + +l   ++e+ l++++
  KIR64788.1 112 rLCAPHGPAGHLALIdwlaarhgwvrNQAEAYAVVVGGHHGVPPTDGDLKAIRDRPYLLgidgLWPEVRDELLDWMSGYADVTGRLPV-WREVALPQPV 209
                 87788999999885566667888888999************888888877777666655899*****************997766655.5677****** PP

                 HHHHHHHHHHHHHHCTSCCCC CS
        HD_6 176 svllaGlvvlADWigSneelf 196
                 +vll+G+v++ADWi+Sn+e+f
  KIR64788.1 210 QVLLTGIVIVADWIASNDEIF 230
                 ******************998 PP

>> Cas3_C  Cas3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.0     3e-24   1.1e-20       2     107 .]     840     953 ..     839     953 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 3e-24
                 SSS-EEEEEEEEEETTS-EETTT.....TSBSBTCCS--HHHHHHHHCTEEEEE-CH...GHHCHHHHCS-....-HHHHCSTTTTTEEEEEEECTTCE CS
      Cas3_C   2 dgeesveVilvqrtedgyrtlde.....geelpldeepdreearalaastvrlParl..eedidkaieele.ektppaWqespwLrgqlvLvldedgea 92 
                 d++e +eV+l+ r+++++rt  +     +  +p+d  p+++ ara+++++++lP++l  +  ++++i+ele ++ +paW+++p+L g+l+L lde+g+a
  KIR64788.1 840 DAAEALEVLLLIRRGGELRTPSWlaeggDVVVPTDFAPSKAVARAMLRCALPLPRALtaNGGTERIIDELEaRNAFPAWEKDPLLGGELILDLDERGQA 938
                 7899**********************85588899***********************98899************************************* PP

                 EETTEEEEEETTTEE CS
      Cas3_C  93 elggfklrydpelGL 107
                 +l ++ l+yd++ GL
  KIR64788.1 939 RLVDHVLTYDRHSGL 953
                 **************9 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   2.7e-10   9.5e-07       2     170 ..     284     487 ..     283     493 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2.7e-10
                 HHHHHHHHHHH...TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.......SEEE.EEETTSSHHH CS
                 xxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxx.xxxxxxxxxx RF
        DEAD   2 diQaeaiplil...gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid.......lrvl.liiggvaard 89 
                 ++Qa++++++      g ++v+a+ G GKT+a+l  +++i+++  ++ +  +++  Ptr+    +++++ ++++ +         r   l  g+   +d
  KIR64788.1 284 PVQAAVVEQARampLPGLLIVEAPMGEGKTEAALA-AVEILAR--RSGAGGCFLALPTRATGDAMFSRVLTWLSRLPdadlgrgARDAaLAHGKAMLND 379
                 56777776666333236899************665.5668876..788889***********************5333456677454425566666799 PP

                 HHHHH...........................HTT...CSEEEEEHHHHHH.HHHCTSSHCTTE....EEEEEETHHHHHHTTTHHHHHHHHHHSHHHC CS
                 xxxxx...........................xxx...xxxxxxxxxxxxx.xxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  90 qlskl...........................dng...vdivvgtpgrldd.llstgklnlsqv....rflVlDEadrlldqgfsdfinrilnqlpqit 153
                 ++s+l                           + +     +vvgt ++l+   l+ +++ l+++    +++V+DEa+ +    +s+ ++r l+ l    
  KIR64788.1 380 EYSRLyrgvlpsaialdeggtqtavhgwlagrK-RkllSSFVVGTIDQLLFaALQARHVALRHLglagKVVVIDEAHAYDVY-MSRYLDRALEWL---- 472
                 999999999999999999998888888888743.34789999999999888566999999***9666677*********998.9******99999.... PP

                 TTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxx RF
        DEAD 154 cdgklqrqvivlSATlp 170
                   g     v++lSATlp
  KIR64788.1 473 --GAHGVPVVILSATLP 487
                 ..223344********9 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         1   3.6e+03      32      65 ..     469     501 ..     446     503 .. 0.71
   2 !   16.8   0.0   1.8e-06    0.0064      12     110 ..     580     693 ..     568     694 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1
                 HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTT CS
  Helicase_C  32 vklllekkgikvavlhgelpqnereeileqfnkg 65 
                 +++l   +g+ v++l ++lp+  r ++++++ +g
  KIR64788.1 469 LEWL-GAHGVPVVILSATLPAARRADMMRAYDDG 501
                 2334.445999*************9999987665 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.8e-06
                 HTTTTSEEEEEESSHHHHHH.HHHHHHHT..TSTEEEESTTSTHHHHH..............HHHHHHH.TTSSSEEEESGGGTSSSTSTTESEEEESS CS
  Helicase_C  12 leeeggkilifvntidrlek.vklllekk..gikvavlhgelpqnere..............eileqfn.kgesdvLiatdvaerGidipkvnlVinfd 92 
                   ++gg +li+ nt+ r+ + +  l+e+   +i v v h++  + +r               +  +  + + +++v++a++vae+++di+  +l++   
  KIR64788.1 580 DLADGGCVLIVRNTVARVLDtAAALREHLgpQIPVSVAHSRFMAADRAakdkwlrdtfgppsHLAKLGRiRPSCHVVVASQVAEQSLDID-FDLLVTDL 677
                 4478999*********7744466665555889**************9988888888888886333333346689***************5.66655544 PP

                 SSSSHHHHHHHHTTSSST CS
  Helicase_C  93 lprnvtsyiqriGRtgRa 110
                 +p  v+ + qr GR +R 
  KIR64788.1 678 AP--VDLILQRLGRLHRH 693
                 55..7899*******996 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.4e-05       0.2      11     124 ..     300     467 ..     289     475 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.4e-05
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae............atTiHrlal.................... 77 
                 ++l+v a+ G GKT+   ++v++l ++ g     + l+ +t+   + +  r+ + + +            a   H+ a+                    
  KIR64788.1 300 GLLIVEAPMGEGKTEAALAAVEILARRSGA--GGCFLALPTRATGDAMFSRVLTWLSRlpdadlgrgardAALAHGKAMlndeysrlyrgvlpsaiald 396
                 678999**********************87..8*****************9977776699999*99999988888888889999999999999999999 PP

      AAA_19  78 .........................ldfddlltealelle..eaeeekklqeeellivDEfqdvdelqyrLlka 124
                                           ++d+ll   +++l+  + + ++   +++++++DE+   d  + r l++
  KIR64788.1 397 eggtqtavhgwlagrkrkllssfvvGTIDQLL---FAALQarHVALRHLGLAGKVVVIDEAHAYDVYMSRYLDR 467
                 99999999999999999999998853333333...33333333333333348889*****99999888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (963 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 7122.92
//
Query:       KIR64789.1  [L=559]
Description: CRISPR-associated protein Cse1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.7e-119  399.9   3.6     2e-119  399.7   3.6    1.0  1  CRISPR_Cse1  CRISPR-associated protein Cse1 (CRISPR_cse1)


Domain annotation for each model (and alignments):
>> CRISPR_Cse1  CRISPR-associated protein Cse1 (CRISPR_cse1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  399.7   3.6  1.1e-123    2e-119       2     453 ..      11     498 ..      10     499 .. 0.93

  Alignments for each domain:
  == domain 1  score: 399.7 bits;  conditional E-value: 1.1e-123
                  TTTSCEEEEEETTSSEEEEEHHHHHHTGGGEEEEE-SSHHHHHHHHHHHHHHHHHHTT---SSHHHHHHHHH.HSS--HHHHHHHHHHCGGGSBTT-S CS
  CRISPR_Cse1   2 LldepWIpvrrrdgrreevsLrellleaheirelagprpdqtvAllrlLlailqralqgppededeeWrelw.eegldpealeaylekwrdrFdLfhp 98 
                  L+++pWIpv++ +grr+ v+L+el+ +a e+r++ag+ p+qt A+lrlLlail+ra++gp ede + W+ lw ++ l++++++ yl+++rdrFdL+hp
   KIR64789.1  11 LIEQPWIPVLDLSGRRRLVTLHELFAQAAELRAVAGELPTQTSAILRLLLAILHRAVGGP-EDERA-WQGLWrRSDLPADDIAGYLDEYRDRFDLLHP 106
                  9********************************************************998.99999.*****999*********************** PP

                  SS-TTSBTTCCCCTTSS.....GGGSTTSSSSCCCCHHSSSSTTSS.SSBEHHHHHHHHHHHHHCS-TCEEEEC.............E---TTSTSEE CS
  CRISPR_Cse1  99 erPFlQvadleeeakked....akLlpelpgsgnndalfdhrtdsk.ealspaeaaraLvtlqafapsGiksga.............agtGplgalgr 178
                   +PF+Qvadl+ + k  d    ++L++++p   nn ++ ++r + +  +l+paeaa +Lv++qa+++sGiksga             +g + +g lg+
   KIR64789.1 107 VTPFYQVADLRTQ-K-GDgfglERLIADVP---NNAPYLTTRLGPGlARLTPAEAAVWLVHCQAYDTSGIKSGAvgddrvkggkgypIGPASCGSLGL 199
                  **********544.3.33579*99******...88899999999678*************************************************** PP

                  EEEE-SSHHHHHHHCS-............T-S-GGG..S--SSSCHHCCCCEEECCCSHHHHTTS--EEEEEEECSSETEEEEEEEECEEEEC-SCCC CS
  CRISPR_Cse1 179 vllrGgnLfetLlLNlvp...........gdlPvWe..ptrtserkkaeeaatrapagpldlltwqsRrirLdpeeeegvrgvlvaagdrlpeganye 263
                  v+l+G++L+etLlLNlvp           +d PvWe  p+++    ++e+++ r p g+l l+twqsRrirL+ ++++  +g+++a+gdr+     + 
   KIR64789.1 200 VYLEGRTLRETLLLNLVPldsdylrqdpeRDSPVWErePHGP----VEENERARGPYGLLNLYTWQSRRIRLFGDQAG-ITGAMIANGDRIAW--PNL 290
                  *****************6656566655556******544444....4455679***********************99.*************9..555 PP

                  CC.-TTS-E.....EEEEETTCEEEEE-B-BTTSTGGGGHHHHHH.....CCCCSCEEC--HHHHHHHHHCCCCCCHHC..EEEEEEEEEE..ETTEE CS
  CRISPR_Cse1 264 gapepmtay.....qrkkkkkkkeylplkfdpgralWRdlaaLla.....seesekgkrpakvvewlaelkrelgeree..irlrvfGlay..dqakv 347
                  +++epm+ +     q+kk  +  +ylp  +d  ralWR+l +Ll+      +++++++rp++v +wla+l+ ++  +++  ++ r++G++y  + ++v
   KIR64789.1 291 HQQEPMSGWrrsanQEKKLGQPLVYLPALHDHTRALWRGLTSLLPapterPGTEAASRRPPAVSQWLARLRIRELIDDRyrVTARAVGVVYgnQMSVV 388
                  669*********************************************9988889999**9*********9999999999***********8447788 PP

                  EEEEEEEEEEECHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSHH....HHHHHHHHHHHHHHHHHHHHHHHCCCCCS.HCTHHH CS
  CRISPR_Cse1 348 rdwveetlplpaalledkealreaveeaveaaeevaralrsavkaaakellkkgkkka....gdasaaraafwaalegpfrellaalgpdddaaealk 441
                  ++++++ l++p+++ + +  l+ ++ + +++ae+++ alr+++ +++++  + g++++    ++a++a++  +a+l+  fr++l +lgp++d+a a+ 
   KIR64789.1 389 DEVYQDALTMPVQAFDPAGPLAVTIVDSAADAEAAVLALRRLAADLCRAAGGYGDRAEdppaAAADRAAEVGYAKLDVLFRRWLGDLGPHSDPAGARI 486
                  999************888888889******************************99999*********************************999*** PP

                  HHHHHHHHHHHH CS
  CRISPR_Cse1 442 awrktlrraalr 453
                  +w+  + r ++r
   KIR64789.1 487 QWQTLADRCVRR 498
                  ***999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 4371.66
//
Query:       KIR64790.1  [L=231]
Description: CRISPR-associated protein Cse2 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-33  115.3   0.6    3.9e-33  115.0   0.6    1.2  1  CRISPR_Cse2  CRISPR-associated protein Cse2 (CRISPR_cse2)


Domain annotation for each model (and alignments):
>> CRISPR_Cse2  CRISPR-associated protein Cse2 (CRISPR_cse2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   0.6   2.2e-37   3.9e-33       1     141 []      51     202 ..      51     202 .. 0.92

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 2.2e-37
                  HHHHHHHHCTSSTTTCGGH...HHHHHHH.....TTTT.HHHHHHHHHHHHHHHHHCCHC....S-SB-TT-CHHHHHHHHHHHTCTHHHHHHHHHHH CS
  CRISPR_Cse2   1 alAaLRrgagkepgespel...wpyllre.....keseeekepeeraayavaalyaahqq....ekehdsgkslgaalgrlreasessesierRfqal 86 
                  alA+LR  +g+epge  ++               ++  +e+++ era++++++lya+hqq    +++h++g +lg+a+  l ++ +++ +++rRf+al
   KIR64790.1  51 ALARLRGVVGREPGEDFTIleqT---RVAekylgDRLGDEPTHTERAMHTALTLYAVHQQsirdTPMHQDGIGLGRAVSLLCSDPDRAAAVRRRFAAL 145
                  69**************9874422...332446887789**************************99***************988888889******** PP

                  CT-SSCCCHHHHHHHHHHHHHCTT--B-HHHHHHHHHTTTTT..CHHHHHHHHHHHH CS
  CRISPR_Cse2  87 ltadtpeelarrLrrlvkllrskevpldyarLaddLlawqee..rkrvrlrWardYY 141
                   ta++++++ ++Lr+l++llr+++++ldy+ LaddL+ +q++   ++vr rW+rd+Y
   KIR64790.1 146 GTATSYAAVTTHLRSLIRLLRDHRIALDYGVLADDLVELQKPwgPAQVRGRWGRDFY 202
                  ****************************************88**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 2076.53
//
Query:       KIR64791.1  [L=383]
Description: CRISPR-associated protein CasC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     1e-128  429.9   5.0   1.3e-128  429.6   5.0    1.0  1  Cas_CT1975  CT1975-like protein
    0.00019   21.1   0.2    0.00069   19.2   0.2    1.7  1  Cas_Cas7    CRISPR-associated protein Cas7


Domain annotation for each model (and alignments):
>> Cas_CT1975  CT1975-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  429.6   5.0  1.4e-132  1.3e-128       1     344 [.       6     354 ..       6     366 .. 0.93

  Alignments for each domain:
  == domain 1  score: 429.6 bits;  conditional E-value: 1.4e-132
                 EEEEEEEEECCETSSB-TTSSB-EEEETTEEEEEE-HHHHHHHHHCSHHHTTT-CCHHS.EECHHHHHHHHHCCCTT...HHHHHHHHHHHHHCCSS-B CS
  Cas_CT1975   1 idihilqsvppsnLNRDDtGspKtavfGgvrRaRvSSQslKraiResfeelldesellgvRtkrlaelvaerlaeeg.vdeeeaealaekllkaagikl 98 
                 +d+hil++vppsn+NRDD+GspKta++GgvrRaRvSSQs+Kra+R +f+++ld+s+ lg+Rtkr+ e++a+r+a+ +   +++a ala+++lka+g+ +
  KIR64791.1   6 LDVHILHTVPPSNINRDDSGSPKTATYGGVRRARVSSQSWKRAVRLAFRRTLDDSQ-LGERTKRIGEAIAARIADLDpELKDRASALAADVLKASGLVK 103
                 69******************************************************.8*******************7668889999*******77655 PP

                 S..B.........TTSS-EECCEEEECHHHHHHHHHHHHHTHHHH......HCCCTT-HHCCHCCHHGHHHHHHHCB-TSSSTCT-BE-SEEEEEEEES CS
  Cas_CT1975  99 ekkk.........ekkekktkallflsreeieelaelieelaeelakeakkkkkakkkelkealdkeksvdiALFGRmvaddpelnvdAavqVAHaist 188
                 ++++         ++++ ++++l+fls+++ e+la++       ++ ++++ +k ++k+l++ +d+++s+diA+FGRm+ad p+lnvdAavqVAHa+s+
  KIR64791.1 104 KEAAakkgkgeaaANSDVESGYLMFLSHRQQENLARA-------AIDAERTGEKLDTKQLQKLADTDHSIDIAMFGRMLADVPDLNVDAAVQVAHALSV 195
                 5444667889999999*********************.......23333447789999***************************************** PP

                 C--S-EEEEEEECGTTS.CSSHCCCSEEEEEEEEEEEEEEEEEEEHHHHHHHCTS.HHHHHHHHHHHHHHHHH--SSTTCCCCTTT-SESEEEEEEESS CS
  Cas_CT1975 189 havenEfDYFtAvDDlk.eeeeaGagmigtvefnsgtlYrYatvdldqLvenlegdreaaaeaveaflkafvtslPtgkqnsfAahtlpdlvlvevrdd 286
                 hav+nEfDY+tAvDD k +++e+Gagmigt+efns+tlYrYat+d+d+L+e l gd++a++eav+afl+afvts+P+gkqn+fA+ht pd+v+v++rd+
  KIR64791.1 196 HAVDNEFDYYTAVDDRKhDNQETGAGMIGTIEFNSATLYRYATIDVDRLHETL-GDADATREAVTAFLQAFVTSMPSGKQNTFANHTRPDAVMVRLRDT 293
                 *****************999*********************************.99******************************************* PP

                 S---GGGGGSS-B--SS.....SCHHHHHHHHHHHHHHHHHHTT--SEEEEECSSSS-SST CS
  Cas_CT1975 287 qpvslanAFeepvkaee...egglleesikaLaeelekleeaygekearrfvvaaeeeaae 344
                 q v+l+ AFeepv++++   ++g+++e++++La++  ++ee+yg+ +++++v+++++++a+
  KIR64791.1 294 QSVNLVGAFEEPVRERQlgdRSGMVAEAAHKLADYTTEIEETYGDPAVAAWVTHVGSRTAA 354
                 **************987665789******************************99986544 PP

>> Cas_Cas7  CRISPR-associated protein Cas7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   7.7e-08   0.00069       8     172 ..      11     245 ..       6     288 .. 0.58

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 7.7e-08
    Cas_Cas7   8 lfdvkngNpNGDpdagnkPRidpetg..eglvsDvclKrkiRnyvekakeekeiyvkekkv..................lnekkeeay........... 75 
                 l +v  +N N D d+  +P++ ++ g  +  vs  + Kr +R  +  + ++ ++  ++k++                                      
  KIR64791.1  11 LHTVPPSNINRD-DS-GSPKTATYGGvrRARVSSQSWKRAVRLAFRRTLDDSQLGERTKRIgeaiaariadldpelkdrA-------Salaadvlkasg 100
                 566777888888.55.7888877766334678888888888888888777644444333333333333444443333330.......133333333333 PP

    Cas_Cas7  76 .................kdeekkelreamcenf..............................................fDvRtFGavmstgvn..gqv 109
                                  +                                                             +D+ +FG  ++ +v   + v
  KIR64791.1 101 lvkkeaaakkgkgeaaaN--------------SdvesgylmflshrqqenlaraaidaertgekldtkqlqkladtdhsIDIAMFGRMLA-DVPdlN-V 183
                 332221121222222220..............12233334444445555555555555566666666666666777778***********.444544.7 PP

    Cas_Cas7 110 rGpVqltfarslepvlpeeqsitrmaateekkekekkqrtmgrkhivpyglYrahgfinanla 172
                   +Vq+ +a s++ v +e    t +   ++ +++e+    +g+  + +  lYr+  +   +l 
  KIR64791.1 184 DAAVQVAHALSVHAVDNEFDYYTAVDDRKH-DNQETGAGMIGTIEFNSATLYRYATIDVDRLH 245
                 79*************777777666655555.55556777777877888888887665444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2772.72
//
Query:       KIR64792.1  [L=240]
Description: CRISPR-associated protein Cas5 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-48  163.6   0.1    6.7e-48  163.4   0.1    1.0  1  Cas_Cas5d  CRISPR-associated protein (Cas_Cas5)


Domain annotation for each model (and alignments):
>> Cas_Cas5d  CRISPR-associated protein (Cas_Cas5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   0.1   3.8e-52   6.7e-48       1     214 [.       3     205 ..       3     206 .. 0.93

  Alignments for each domain:
  == domain 1  score: 163.4 bits;  conditional E-value: 3.8e-52
                 EEEEEEECCEE-EB-TTCCSCCCBESS--HHHHHHHHHHHHT--TTS--CCCCTTEEEEEEEEEEEEEEETEEEEECT-GGGS--BSSS----CCEEEE CS
   Cas_Cas5d   1 tLllrlegplasfgrpsrkveretydvPtkSavlGllaaalGirrdddleelkpalrwgvrvdrrgellrgdyhtvagrtlperrkektadrkkraatv 99 
                 +Lllrl+gpl+++g +sr+++r t+  PtkS+v+Gllaaa G rr+d+l el   l +gvr+d++g++lr d++ +                ++r ++ 
  KIR64792.1   3 VLLLRLAGPLQAWGSTSRFTQRHTEIAPTKSGVIGLLAAARGQRRTDPLTELL-GLDFGVRIDQPGQILR-DFQVAR-------------TLDGRDSMP 86 
                 599************************************************99.****************.**9999.............67899**** PP

                 EEEEEEEECEEEEEECCSCCHHHHHHHHHHHHHTTSSSSESSSTTSEEEECESETTT.CESSHHHCCHSSCEBSSSBS..........EEEEEEEE--E CS
   Cas_Cas5d 100 lseraYladahfevalegeeegklleelaralrkpvwplyLGrkecivpvepveaekvgeeegledalkelppkvegi..........lglmledfdtd 188
                 l++r+Yl da+f++a+ g+ e  ll+ l++a+r+p++plyLGr++c +pv+pv     ++++++ ++l++ p+++  +          l++ l+ + ++
  KIR64792.1  87 LTNRYYLSDAVFLAAIGGDSE--LLDGLHEAVRRPQFPLYLGRRSC-PPVAPVTL--GVRPGTVAEVLGDVPWQASKRlrergpstvgLEALLD-APPG 179
                 *********************..***********************.*******8..79999*************9777787776655444444.3688 PP

                 ESSCEEEEEEEEEEEEEEEECCEEEE CS
   Cas_Cas5d 189 epdetslydvparffrakrkfgvrrv 214
                 +++++  +d p++f++a+r++g+r v
  KIR64792.1 180 AEATETFQDEPISFDPAHRQYGWRAV 205
                 9999999*****************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       199  (0.0110993); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1939.15
//
Query:       KIR64793.1  [L=323]
Description: CRISPR-associated protein Cse1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-17   62.4   0.0      1e-07   31.4   0.0    2.1  2  Cas_Cas1  CRISPR associated protein Cas1
  ------ inclusion threshold ------
      0.045   13.5   0.3        1.3    8.9   0.7    2.6  2  BCL9      B-cell lymphoma 9 protein


Domain annotation for each model (and alignments):
>> Cas_Cas1  CRISPR associated protein Cas1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.1e-11     1e-07       6     106 ..      28     127 ..      24     135 .. 0.92
   2 !   29.1   0.0   5.8e-11   5.2e-07     147     241 ..     139     233 ..     130     246 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.1e-11
                 TEEEEEEETTEEEEEESSEEEEEEECCCEEEEEEESTEEEEHHHHHHHHHTT-EEEEE-TTS-EEEEEEESSSSTHHHHHHHHHHHHSHHHHHHHHHHH CS
    Cas_Cas1   6 qgaylrkkgerlvvekegeekkeiplediesivifgevslstkalrllaekgipvvflsengkylgrlepeesgnvelrraQyraaddeekrlelakki 104
                 + ++l+++++ ++ ++e+  + ++p+ ++  +++   +s++++a+ l+a++g +vv++ e+g  ++    +  ++ +l++aQ++a++ +++rl++a+++
  KIR64793.1  28 ERCVLHRDSNAITATDEKG-VVHLPAATLGVLMLGPGTSITQQAMMLIADNGATVVWVGEHGIRYYAHGRSLARSSRLLLAQAAAVSHRDRRLQVARAM 125
                 56789************88.9********99999999*************************888888889**************************98 PP

                 HH CS
    Cas_Cas1 105 va 106
                  +
  KIR64793.1 126 YR 127
                 65 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 5.8e-11
                 SHHHHHHHHHHHHHHHHHHHHHHCSCGGS-SS-SSSS-....SSHHHHHHHHHHHHHHHHHHHHHHTSS--TT--SSS--TTSS-HHHHHHHHHHHHHH CS
    Cas_Cas1 147 sleeLrgiEGeaakaYfeafdkllkeefefegRsrrpp....kDpvNalLsfgYtllysevlsaieavgLdPyiGfLHedrpgrpsLalDLmEefRpll 241
                 ++++Lrg EG+  ++ +++ +  l+  +++++R+  p     +D+vN  Ls + + ly  v + i a g  P +Gf H+ ++   s ++D+++ +++ +
  KIR64793.1 139 TMQQLRGKEGARVRRCYREHS--LRTGVSWNNREYDPDnfdgSDRVNQALSAAHACLYGIVHTVIVAIGASPGLGFVHTGHE--RSFVYDIADLYKAEI 233
                 689**************9765..788***********766679***********************************7665..589********9865 PP

>> BCL9  B-cell lymphoma 9 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.7   0.00014       1.3       9      30 ..     114     135 ..     112     143 .. 0.86
   2 ?    1.2   0.0     0.037   3.3e+02      18      32 ..     272     286 ..     270     291 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00014
        BCL9   9 HRErqLaTLRdiqrmLFpenqa 30 
                 HR+r L+  R + rm Fp ++ 
  KIR64793.1 114 HRDRRLQVARAMYRMRFPGEDT 135
                 ******************7654 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.037
        BCL9  18 RdiqrmLFpenqaga 32 
                 Rdi  +L+ +++ag+
  KIR64793.1 272 RDIRSLLLTDGSAGP 286
                 9*********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2304.82
//
Query:       KIR64794.1  [L=778]
Description: alkaline phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-50  173.0   1.7    8.6e-46  157.2   0.1    3.5  3  Phytase-like   Esterase-like activity of phytase
  ------ inclusion threshold ------
      0.067   12.8   0.0         19    4.7   0.0    3.1  4  SGL            SMP-30/Gluconolactonase/LRE-like region
       0.12   11.3   0.0       0.25   10.2   0.0    1.5  2  Me-amine-dh_H  Methylamine dehydrogenase heavy chain (MADH)
       0.13   10.8   0.0       0.28    9.7   0.0    1.5  1  Cytochrom_D1   Cytochrome D1 heme domain


Domain annotation for each model (and alignments):
>> Phytase-like  Esterase-like activity of phytase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.012        53     128     197 ..     172     247 ..     146     277 .. 0.85
   2 !    9.6   0.0   0.00017      0.77      51     132 ..     372     442 ..     314     476 .. 0.65
   3 !  157.2   0.1   1.9e-49   8.6e-46       2     285 ..     492     754 ..     491     755 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.012
  Phytase-like 128 glalspdgrkLyaalEspldqdgaka.keagsr.......lrilefdlatgktvgefaypleavaeaggngisdllal 197
                   ++a+s d+r+   a+E++ d+d++++ +++g++       + il +d ++  t ++++ ++ ++++a+g+++ +l+a 
    KIR64794.1 172 SIAISHDQRYAAIAIENERDEDATPPgRKKGDLpqapagfVQILDLDGRS--TPQRWKLRTVPLTAADGQALPALAAA 247
                   79**********************99988887777777777888888776..57888888877666777777777765 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00017
  Phytase-like  51 evtplkdpdgapfpkkglDpEgiavapdg...tfwvssEggpfilefdadGkllrelplpaellpaaspdaglrrnrGfEglals 132
                    ++ l+++d a  +kkg+ pEg+a+a+ g     +v+sE+ +f+  +d++   + + p+  ++         l++  G Egl   
    KIR64794.1 372 VRHGLHNEDRA--AKKGTEPEGVAIAEYGgvrYAFVGSERSNFVAVYDLS---RPTAPVFRQV---------LPTTNGPEGLLPI 442
                   35567777644..469*********7666233579*************87...2222223333.........4444455555555 PP

  == domain 3  score: 157.2 bits;  conditional E-value: 1.9e-49
  Phytase-like   2 pvgglSglaydp.kdgrfyalsDrgsknsarfytlkldldadklgkveitevtplkdpdgapfpkkglDpEgiavapdgtfwvssEgg....pfile 93 
                    +g+l +l++   +++++y+++D  + +++r++t +        +++ +t+++p++d+dg+p    ++D+Egi   p+g+fw++ Eg     + +++
    KIR64794.1 492 GWGALGALSAATgRPQQLYSVTDAAY-TPTRILTVDAGR-----SPAVVTDSLPVTDADGNPA---AYDAEGIFARPQGGFWLAVEGAkgaeNKLVR 579
                   577888887776689***********.*******99999.....9*****************9...89***************************** PP

  Phytase-like  94 fdadGkllrelplpaellpaaspdaglrrnrGfEglalspdgr...kLyaalEspldqdgakakeagsrlrilefdlatgktvgefaypleavae.a 186
                    da+G+ ++++plpae+       a+   ++GfEg+a+s d +    ++a+l++++  d+a+       +ri ++d+++g t+++f+y+le++a  +
    KIR64794.1 580 LDAAGRTQQTVPLPAEV-------AAGLGKQGFEGVAASTDRHgreIVWAVLQREVSTDPAGV------ARIGRYDVTAG-TWSWFGYRLESTAVaG 662
                   *****************.......888899***********889999***************9......********997.9**********99999 PP

  Phytase-like 187 ggngisdllalddgrllvlERdfseg.tgntkrlykidlagatdvsgveslagadgvkpvdkellldlakl.....glpldniEGlavgprldgrrt 277
                   ++ g+s++++++++ l ++ERd+ +g +++ kr+y++ + +  + +g         +++++k+l +d+ ++     g++ +++EGl+v     g+ +
    KIR64794.1 663 DWIGLSEVTVVGNR-LAIIERDKLNGpAAALKRVYTVPMPAGPAAPGP--------LAVLPKTLAVDVLSAlratnGWTQEKLEGLTV----AGNGQ 746
                   ************99.*******9999999***********99888886........99************9****99***********....9**** PP

  Phytase-like 278 lllvsDnN 285
                   ++ ++Dn+
    KIR64794.1 747 VYAITDND 754
                   *******9 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.006        27     140     167 ..      76     103 ..      73     181 .. 0.82
   2 ?   -3.7   0.0       1.6   7.1e+03      54      74 ..     270     290 ..     251     300 .. 0.65
   3 ?    4.7   0.0    0.0042        19     188     226 ..     554     596 ..     509     630 .. 0.70
   4 ?   -3.4   0.0       1.2   5.6e+03      91     113 ..     739     761 ..     714     773 .. 0.55

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.006
         SGL 140 awspdgktlYlaDsltrkiwaydvdaeg 167
                 a+spdg+tl ++D ++r+i   d+++++
  KIR64794.1  76 AVSPDGRTLVYTDAAARRIGFLDIARPD 103
                 689***************9888887655 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.6
         SGL  54 lvvasksglalldlasgelet 74 
                 + + +++g++l+dl +g+++ 
  KIR64794.1 270 VTLQENNGVVLVDLPTGRVTG 290
                 444556666666777777664 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0042
         SGL 188 GlavDaeGnvwvAvwggg....kvvrfdpdGklieeiklpakr 226
                 G++   +G+ w Av g++    k+vr+d +G+  +++ lpa++
  KIR64794.1 554 GIFARPQGGFWLAVEGAKgaenKLVRLDAAGRTQQTVPLPAEV 596
                 6666777777777764333444777888888777777777654 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 1.2
         SGL  91 gvvdpdGrlwfGtmgdeeakgee 113
                 + v+ +G++++ t +d+ ++ + 
  KIR64794.1 739 LTVAGNGQVYAITDNDGVQDATG 761
                 44444444444444444444443 PP

>> Me-amine-dh_H  Methylamine dehydrogenase heavy chain (MADH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.2   5.2e+03      95     125 ..      70      99 ..      67     101 .. 0.69
   2 ?   10.2   0.0   5.6e-05      0.25     253     308 ..     132     187 ..     127     193 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.2
                    --GGGEEE-TTSSEEEEEE-SSSSEEEEEET CS
  Me-amine-dh_H  95 vyprmtsltpdnktllfyqfspspavgvvdl 125
                    +++ +++++pd++tl++ + + +  +g +d+
     KIR64794.1  70 TVAEISAVSPDGRTLVYTDAA-ARRIGFLDI 99 
                    566788999999998876644.455666665 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 5.6e-05
                    EEEEEE--TT-TTS-EEEEEEEETTT--EEEEEEEEEEESEEEE-SSSS-EEEEEE CS
  Me-amine-dh_H 253 ylladqrakwkhktasrfvfvvdaktgkrlakielgheidsisvsqdakpqlyals 308
                    y+l+   +   + ++s  + v++  t +r++ i+lg + dsi++s d++    a+ 
     KIR64794.1 132 YVLVVVNTSASYTAPSGRLDVIELATRQRVRSIDLGGQPDSIAISHDQRYAAIAIE 187
                    777777888889999*99*****************************987777665 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   6.3e-05      0.28      56      92 ..     147     183 ..     119     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 6.3e-05
                   TSEEEEEESSSSSEEEEEE-SSEEEEEEE--TTSEEE CS
  Cytochrom_D1  56 DgkvtliDLwakeivaevkiGlnarsvavSqddryvi 92 
                    g++++i+L +++ v+ + +G++  s+a+S+d ry++
    KIR64794.1 147 SGRLDVIELATRQRVRSIDLGGQPDSIAISHDQRYAA 183
                   699********************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.22s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 5671.28
//
Query:       KIR64795.1  [L=98]
Description: hypothetical protein TK50_04125 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 733.56
//
Query:       KIR64796.1  [L=161]
Description: alkylhydroperoxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.8e-21   73.8   1.9    8.8e-21   73.8   1.9    1.7  2  CMD          Carboxymuconolactone decarboxylase family
  ------ inclusion threshold ------
       0.07   13.0   0.1       0.47   10.4   0.0    2.2  3  WHAMM-JMY_N  N-terminal of Junction-mediating and WASP homolo


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   1.9   9.8e-25   8.8e-21       3      85 .]      16      96 ..      14      96 .. 0.92
   2 ?   -1.8   0.0      0.37   3.3e+03      58      61 ..     122     125 ..     104     142 .. 0.55

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 9.8e-25
                HHHHHHHHHHHHCCGSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHHHHH CS
         CMD  3 llraltalreallareggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaaraAlaaaee 85
                +++++++ ++ +   ++ L+++++eL++l++s++ngc +C+d+Ht++A  aG+++ ++  v+a+++++ +++a+raAla+aee
  KIR64796.1 16 FAKRFANAGMVIH--QSPLPKATQELVSLRASQINGCGWCIDMHTKEAAAAGESQVRLHLVAAWRESTVFTEAERAALALAEE 96
                5666667666666..677***************************************************************96 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.37
                 HHHH CS
         CMD  58 eeia 61 
                 ++ia
  KIR64796.1 122 DQIA 125
                 3333 PP

>> WHAMM-JMY_N  N-terminal of Junction-mediating and WASP homolog-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.39   3.5e+03      21      32 ..      68      79 ..      63      85 .. 0.76
   2 ?   -0.7   0.0      0.15   1.3e+03      13      24 ..      80      91 ..      75      94 .. 0.82
   3 ?   10.4   0.0   5.2e-05      0.47       3      44 ..     107     147 ..     105     152 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.39
  WHAMM-JMY_N 21 kskLrFlVaWne 32
                 + +L ++ aW e
   KIR64796.1 68 QVRLHLVAAWRE 79
                 348899999976 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.15
  WHAMM-JMY_N 13 edlFeepekskL 24
                 +++F e+e+  L
   KIR64796.1 80 STVFTEAERAAL 91
                 589****99877 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 5.2e-05
  WHAMM-JMY_N   3 dSlegWVAvkedlFeepekskLrFlVaWnevegkfAvtCHnr 44 
                  +S e W  v+++ +++ +   L+ lVa+ ++ +++Av  H r
   KIR64796.1 107 VSDETWAQVRKH-YDDDQIAALVCLVALINAANRLAVIVHQR 147
                  68899*999987.7888889********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1252.99
//
Query:       KIR64797.1  [L=309]
Description: RNA polymerase sigma24 factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-13   49.9   2.1    5.4e-13   48.5   2.1    1.7  1  Sigma70_r2    Sigma-70 region 2
    1.2e-12   47.3   0.0    2.5e-12   46.3   0.0    1.6  1  Sigma70_r4_2  Sigma-70, region 4
    1.6e-08   33.9   1.1    5.9e-08   32.1   0.0    2.1  2  Sigma70_r4    Sigma-70, region 4
    7.2e-05   23.4   0.0    0.00024   21.7   0.0    1.9  1  SnoaL_2       SnoaL-like domain
     0.0008   19.8   0.0     0.0021   18.4   0.0    1.7  1  DUF4440       Domain of unknown function (DUF4440)
     0.0086   16.3   0.0      0.017   15.4   0.0    1.4  1  SnoaL_3       SnoaL-like domain
  ------ inclusion threshold ------
       0.13   12.4   0.1       0.25   11.5   0.1    1.5  1  Sigma70_r3    Sigma-70 region 3


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   2.1   2.1e-16   5.4e-13       3      70 ..      26      89 ..      24      90 .. 0.92

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 2.1e-16
                HHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2  3 erylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70
                  +++l++ +a+ llgs+adaeD++Qe++lr w +v+    + +++ +a+l+ria+++a++rlR  +r
  KIR64797.1 26 LTHRNLLFTVAYELLGSAADAEDVLQETWLR-WAGVD---LGAVRDQRAYLVRIATRQALTRLRALGR 89
                579****************************.66888...789999******************9877 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   9.8e-16   2.5e-12       2      53 ..     121     172 ..     120     173 .. 0.95

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 9.8e-16
                   HHHHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHH CS
  Sigma70_r4_2   2 qalrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkk 53 
                   +a++  l++L + +r++f+lr++++l y+EIAe  + s++tV++  +RAr++
    KIR64797.1 121 MAMLLVLETLGPTERAVFVLREVFDLGYDEIAEAVDKSPATVRQIAHRARAH 172
                   577889********************************************98 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.5      0.27   6.8e+02      37      50 .]      73      86 ..      72      86 .. 0.86
   2 !   32.1   0.0   2.3e-11   5.9e-08       1      47 [.     126     172 ..     126     175 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.27
                HHHHHHHHHHHHHH CS
  Sigma70_r4 37 VrqiekrAlrkLRk 50
                Vr   ++Al +LR+
  KIR64797.1 73 VRIATRQALTRLRA 86
                777889******95 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 2.3e-11
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrk 47 
                 +L++L + er v++lr + +l + EI+e  + S  +Vrqi +rA+ +
  KIR64797.1 126 VLETLGPTERAVFVLREVFDLGYDEIAEAVDKSPATVRQIAHRARAH 172
                 599*****************************************976 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   9.3e-08   0.00024       2      54 ..     192     252 ..     191     286 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 9.3e-08
                 HHHHHHHHTTCHHHHHHTEEEEEEEEET.TSE.......EESHHHHHHHHHHHHHHEEEEE CS
     SnoaL_2   2 raflaalnagdldalaalfapdvvwedp.gge.......lrGreairaffralfaafpdlr 54 
                 +af +a+++gdl++l++l+apdvv+ +  gg        ++G + +++ +++ + ++p+++
  KIR64797.1 192 DAFRRAVETGDLQRLLDLLAPDVVLLGDgGGVkqavlrpVVGADKVARLLAGGWGRVPGVT 252
                 68999*********************8855557888888**************99998865 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   8.3e-07    0.0021       4      37 ..     190     223 ..     187     259 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.3e-07
                 HHHHHHHHHHCT-HHHHHHCEEEEEEEE-TTS-E CS
     DUF4440   4 leealeeafvagdaealaallapdavlvgpsgtv 37 
                 +  a+ +a+++gd+++l +llapd+vl g++g v
  KIR64797.1 190 VLDAFRRAVETGDLQRLLDLLAPDVVLLGDGGGV 223
                 67899**************************866 PP

>> SnoaL_3  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.7e-06     0.017       3      34 ..     189     220 ..     188     242 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.7e-06
     SnoaL_3   3 alldafyeaaaegdfdalfalwaddivfigtg 34 
                  +ldaf +a+++gd+++l++l+a+d+v +g g
  KIR64797.1 189 TVLDAFRRAVETGDLQRLLDLLAPDVVLLGDG 220
                 79*************************99944 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   9.9e-05      0.25      24      50 ..     149     175 ..     148     191 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.9e-05
                 HHHHHHHTXXHHHHHHHHHHHXXXEET CS
  Sigma70_r3  24 eEiAeeLglseekVrevleaarepvSl 50 
                 +EiAe+++ s++ Vr++   ar +v+ 
  KIR64797.1 149 DEIAEAVDKSPATVRQIAHRARAHVAA 175
                 6********************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2127.32
//
Query:       KIR64798.1  [L=238]
Description: hypothetical protein TK50_04145 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-59  198.5   0.0    1.5e-58  197.9   0.0    1.2  1  XhoI      Restriction endonuclease XhoI


Domain annotation for each model (and alignments):
>> XhoI  Restriction endonuclease XhoI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.9   0.0   8.2e-63   1.5e-58       5     182 ..      27     203 ..      23     207 .. 0.97

  Alignments for each domain:
  == domain 1  score: 197.9 bits;  conditional E-value: 8.2e-63
        XhoI   5 sgkadqGersavtgGkqldGfielllelllaaGlaekeiyvkkelelPGffrptkewdllvvkegkllaaielksqvgpsfGnnfnnrteealGsaldl 103
                  gk d+G r+avtgG++l+ + ell +++++aG + +++  ++ +elPG+frptk+wdl+v+ eg+l+aaielks+vgpsfGnnfnnr+eea+Gsa dl
  KIR64798.1  27 DGKIDTGGRGAVTGGAHLNAMTELLGNVFRDAGFPPDAVRCRSGVELPGYFRPTKKWDLVVLLEGELVAAIELKSHVGPSFGNNFNNRVEEAIGSAADL 125
                 699************************************************************************************************ PP

        XhoI 104 wtayregafkesprPflGylllledaeasrksvrvsephfevleefkgasyvkryellcrklvrerlytaaalivsdre 182
                   ay +g  ++  +P+lGy+llle+a+ s ++ r ++  f++ + f ++sy++ry +lcr+l    ly+a++l++s r+
  KIR64798.1 126 RRAYDNGLLGR-TKPWLGYVLLLEEAPGSVSKGRPRSGTFPIDPAFADTSYLDRYVILCRRLRSAGLYDATCLVTSSRQ 203
                 *****998875.69*************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1689.86
//
Query:       KIR64799.1  [L=559]
Description: helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-49  168.2   0.0    2.6e-49  167.7   0.0    1.1  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
    2.6e-42  144.0   0.2    2.6e-42  144.0   0.2    1.7  2  Helicase_C_3   Helicase conserved C-terminal domain
      1e-12   48.4   0.0    1.6e-12   47.8   0.0    1.3  1  ResIII         Type III restriction enzyme, res subunit
    1.2e-10   41.7   0.0    2.1e-10   40.9   0.0    1.4  1  Helicase_C     Helicase conserved C-terminal domain
    0.00035   19.4   0.0     0.0022   16.8   0.0    1.9  2  SNF2_N         SNF2 family N-terminal domain
     0.0017   18.1   0.0     0.0033   17.2   0.0    1.4  1  DEAD           DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.7   0.0   8.8e-53   2.6e-49       2     196 ..     359     546 ..     358     551 .. 0.97

  Alignments for each domain:
  == domain 1  score: 167.7 bits;  conditional E-value: 8.8e-53
  ERCC3_RAD25_C   2 qekgylakvqcaevWcpmtaefykeylkakskkkkllyvmnpnkfracefLikyhekrgDkiivfsDnvfaLkeyakklkkpyiyGetseaerlki 97 
                    +++g++a +qc+ev   +t      y +a+++++  ++++  +k+ ++  L++ h   +++++v    +  L+++++ l  p ++G+t+++er ++
     KIR64799.1 359 EQQGWIAPAQCTEVRVTLTDAERMSYATAEAEERYRMAATARTKLPVVRALVDRHP--DEQVLVIGGYIDQLHQLGEYLDAPIVQGSTTNKERERL 452
                    689**************************************************997..578*********************************** PP

  ERCC3_RAD25_C  98 lqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrrqeaqrlGriLrakkksneeefnaffYsLvskDtkemaystkrqqflvdqGYafk 193
                    +++f++  +v+t+++skvg+ siDlPea v iq+s  fgsr+ eaqrlGr+Lr+k++    + +a+fY++vs+Dt + +y+++rq+fl +qGYa+ 
     KIR64799.1 453 FDAFRSG-EVRTLVISKVGNFSIDLPEAAVAIQVSGTFGSRQEEAQRLGRVLRPKAD----GRQAHFYTVVSRDTIDTEYAAHRQRFLAEQGYAYT 543
                    ****976.8**********************************************99....89********************************* PP

  ERCC3_RAD25_C 194 vit 196
                    ++ 
     KIR64799.1 544 IVD 546
                    986 PP

>> Helicase_C_3  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   0.2   8.7e-46   2.6e-42       1     126 [.       6     133 ..       6     134 .. 0.98
   2 ?   -3.4   0.1       3.5     1e+04      22      53 ..     380     410 ..     376     419 .. 0.63

  Alignments for each domain:
  == domain 1  score: 144.0 bits;  conditional E-value: 8.7e-46
  Helicase_C_3   1 livqaDltillegdsplaeearaaLaafAelesrpehahtyrltplSlrrAldaGltaeeiiefLerlskypvPqaleylirdvarryGklrlgl.. 95 
                   livq+D+t+lle d+p a+++r a+a+fAele++peh+htyrltpl+l++A++aG++ae ++++L ++s+ypvP+al ++++++++ryG+l+l +  
    KIR64799.1   6 LIVQSDKTLLLEIDHPDAQSCRMAIAPFAELERSPEHVHTYRLTPLGLWNARAAGHDAEAVVDALLKYSRYPVPHALLVDVAETMDRYGRLQLANdp 102
                   8***********************************************************************************************9 PP

  Helicase_C_3  96 easlvlrsddpalleelladkkiaklllrri 126
                   +  lvlr+ d+ +l e++++kk+a +l++++
    KIR64799.1 103 AHGLVLRALDRLVLIEVAKSKKLAGMLGAKL 133
                   99***********************998876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.5
  Helicase_C_3  22 raaLaafAelesrpehahtyrltplSlrrAld 53 
                   +++  a+Ae e r  +a t r t+l + rAl 
    KIR64799.1 380 ERMSYATAEAEERYRMAATAR-TKLPVVRALV 410
                   555567788888877777776.6666666665 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   5.2e-16   1.6e-12       2     169 ..     186     332 ..     185     334 .. 0.86

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 5.2e-16
                 -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.... CS
      ResIII   2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekd 100
                 ++lr+yQ ea+e++ +         g++++++G+GKTlv a+++++ +       +l+lv ++    q+++e+   +s + + + +++sg++k++    
  KIR64799.1 186 FTLRSYQREAVEAFWAGG------SGVVVLPCGAGKTLVGAAAMAEAKA-----TTLILVTNTVAGRQWKRELIARTSLTEE-EIGEYSGERKEI---- 268
                 689***********9665......6*********************999.....79*****************999998765.677788888888.... PP

                 ...-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---SEEEEEESS- CS
      ResIII 101 stnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswreilekfkeavllglTATp 169
                    + ++++t+q l++++  +  + + ++     +++ DE+H l a   +r  +  +++  +lglTAT+
  KIR64799.1 269 ---RPVTIATYQVLTSRRGGAFTHLDLFGARDWGLVVYDEVHLLPA-PIFRFTA-DLQARRRLGLTATL 332
                 ...8**************6656666666666666************.8777754.5599*********7 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   7.1e-14   2.1e-10       6     109 ..     406     504 ..     401     506 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 7.1e-14
                 HHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.SSHHHHHHH CS
  Helicase_C   6 llellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.rnvtsyiqr 103
                 + +l+  ++ ++++l++  +id+l   + l   + + + +++g+++++ere+ +++f++ge++ L+ ++v+  +id+p++ + i+++    + ++  qr
  KIR64799.1 406 VRALV-DRHPDEQVLVIGGYIDQL---HQL--GEYLDAPIVQGSTTNKERERLFDAFRSGEVRTLVISKVGNFSIDLPEAAVAIQVSGTfGSRQEEAQR 498
                 55666.8999************99...555..34468899********************************************99999455899**** PP

                 HTTSSS CS
  Helicase_C 104 iGRtgR 109
                  GR+ R
  KIR64799.1 499 LGRVLR 504
                 ****99 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   7.5e-07    0.0022      99     218 ..     230     335 ..      98     351 .. 0.77
   2 ?   -0.2   0.0      0.11   3.3e+02     275     317 ..     357     401 ..     351     431 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.5e-07
                 EEEE--HHHH.HHHHHHHHHH-TTS-EEE--SSHHHH-----------------EEEE-HHHHHHHT.........TTS-S-S-SEEEES-GGGT--TT CS
                 xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  99 tLivvPasll.dqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydvvittYdvlsreaelq...kkrsvlkqvewkrvvlDEghtlknst 193
                 tLi+v  +++ +qW++e+ + +s  + ++  y             + +  +   v i tY+vl ++   +   ++ + + +++w  vv DE h l    
  KIR64799.1 230 TLILVTNTVAgRQWKRELIARTSLTEEEIGEY-------------SGERKEIRPVTIATYQVLTSRR--GgafTHLDLFGARDWGLVVYDEVHLLPA-- 311
                 66666665543566666665555554444444.............444567789*********9655..2357**********************75.. PP

                 SHHHHHHHH---S-EEEE-S--SSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 194 skaaeavskLstsnrwiltGTPiqn 218
                   +  +  +L++++r+ lt+T + +
  KIR64799.1 312 -PIFRFTADLQARRRLGLTATLVRE 335
                 .567777789999999999997666 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.11
                 GT--S..---EEEEEEEEE--HHHHHHHH................ CS
                 xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 275 dvekn..lPpkteeiiflklskverksYnrllevlrkkalakllk 317
                 d+e++  ++p ++  +++ l++ er sY ++   +r  ++a+ ++
  KIR64799.1 357 DIEQQgwIAPAQCTEVRVTLTDAERMSYATAEAEERYRMAATART 401
                 5533234899999999*************9998888888777665 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.1e-06    0.0033       2     134 ..     190     310 ..     189     335 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 ++Q+ea++++  gg+ +v  + G+GKTl+ + ++         + +  +li++  +   +q  ++l  +++ ++ ++   ++g++++    ++ +++++
  KIR64799.1 190 SYQREAVEAFWAGGSGVVVLPCGAGKTLVGAAAMA--------EAKATTLILVTNTVAGRQWKRELIARTSLTE-EEIGEYSGERKEIRPVTI-ATYQV 278
                 68***************************999999........556679********************99655.555667777776666666.88999 PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrll 134
                 + +  g  + +l+   +  ++  ++V DE++ l 
  KIR64799.1 279 LTSRRGGAFTHLD--LFGARDWGLVVYDEVHLLP 310
                 9999999999996..56699***********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3578.92
//
Query:       KIR64800.1  [L=291]
Description: hypothetical protein TK50_04155 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-13   50.3   0.5    6.1e-13   49.4   0.5    1.5  1  YkuD          L,D-transpeptidase catalytic domain
    4.4e-05   23.6   0.1    7.7e-05   22.8   0.1    1.4  1  PG_binding_1  Putative peptidoglycan binding domain
  ------ inclusion threshold ------
      0.021   15.0   0.0      0.033   14.3   0.0    1.4  1  DUF4253       Domain of unknown function (DUF4253)


Domain annotation for each model (and alignments):
>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.5     1e-16   6.1e-13       4     145 ..     176     283 ..     173     284 .. 0.77

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 1e-16
                 EEEETTTTEEEEEEETTEEEEEEE.-BEBTTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTTCECCCCEEE-STTS-E CS
        YkuD   4 ivvdlaeqrllvlyengklvlsfp.vsvGgkkegdreTPlGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskvalgkvkfvfpngsgiy 101
                  ++dl++q++ +  ++gk+v+    + +G   +++  TP Gtf+i++ + + ++ +++++            p                + + + +g +
  KIR64800.1 176 FCIDLTHQTT-WALRGGKVVWGPTvTRTG---MKGYATPAGTFTINYRNIKEWSDPYEVW-----------LP----------------YWQHFTQGMG 243
                 579****655.777999999774459999...88************88888887666664...........33................3344567777 PP

                 EEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEEE CS
        YkuD 102 iHgtgapdlfergkgarrShGCirlseedakelyelvlvgtpvv 145
                  H+t ++ +++       ShGC++l ++da++ +el +vg++vv
  KIR64800.1 244 YHQTTTYLHDKS----IGSHGCVNLLPADALRAWELGKVGSRVV 283
                 777777766444....55*******99*************9987 PP

>> PG_binding_1  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   1.3e-08   7.7e-05       6      55 ..     103     154 ..      99     155 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.3e-08
                   HHHHHHHHHTT--..SSSSSB--HHHHHHHHHHHHHTTST.-SSSBSHHHHH CS
  PG_binding_1   6 kelqryLsrlGyl.sgpadgtfgpateeaVkefQqffgLp.vtGildpaTla 55 
                   +e++ yL+rlG   + ++dg+ ++a  +a+k+fQq++ +  + G+++p T++
    KIR64800.1 103 REVETYLARLGGFgRVTVDGRQSAADCAAIKKFQQRYDIRpAAGRAGPTTYD 154
                   789*******776577***********************9888*****9976 PP

>> DUF4253  Domain of unknown function (DUF4253)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.6e-06     0.033      25      88 ..     121     185 ..     101     235 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.6e-06
     DUF4253  25 yeltnedlvavlrsWeerygaelvgigfdtlelsv.akppkteeealalAaEhyafCpdlvdqgv 88 
                 + +++++ +a ++++++ry++++++      ++ v +++ +t++++ + A    +fC dl++q +
  KIR64800.1 121 DGRQSAADCAAIKKFQQRYDIRPAAGRAGPTTYDVaKRLATTDTKRCKAASSGTTFCIDLTHQTT 185
                 45567778999*************9877766666615677899999****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.52
# Mc/sec: 1692.84
//
Query:       KIR64801.1  [L=72]
Description: hypothetical protein TK50_04160 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.56   10.7   7.0        1.3    9.5   1.4    1.9  2  DUF202    Domain of unknown function (DUF202)
       0.84    9.8   9.6        4.8    7.4   3.0    2.1  2  CcmD      Heme exporter protein D (CcmD)


Domain annotation for each model (and alignments):
>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.4   0.00015       1.3      37      67 ..       8      39 ..       3      40 .. 0.77
   2 ?    7.0   6.9   0.00086       7.7      16      64 ..      17      72 .]      17      72 .] 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00015
      DUF202 37 salg.kilglilivlgiltllvglvrylrrqr 67
                +++g + ++++l+ +++++llvg++ y ++++
  KIR64801.1  8 APAGeVSAATLLAYATAAVLLVGWFLYGWLVQ 39
                44442667888999999********9998876 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00086
      DUF202 16 tslalialglallrffl.......tgepsalgkilglilivlgiltllvglvrylr 64
                t+la ++++++l+ +fl       +g ++++g  +g+++++l +++++  ++r++r
  KIR64801.1 17 TLLAYATAAVLLVGWFLygwlvqrQGFVASVGESAGAGFALLLAVSVVGTVRRSRR 72
                67888888888888888777777788889999******999999999999888875 PP

>> CcmD  Heme exporter protein D (CcmD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.0   0.00053       4.8       9      31 ..      19      41 ..      18      43 .. 0.91
   2 ?    6.6   0.5    0.0009         8      13      31 ..      54      72 .]      51      72 .] 0.91

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00053
        CcmD  9 lsYgitllvlagLilwslrdrrr 31
                l+Y+ ++++l+g +l+ ++ +r+
  KIR64801.1 19 LAYATAAVLLVGWFLYGWLVQRQ 41
                8*************999998886 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0009
        CcmD 13 itllvlagLilwslrdrrr 31
                 ++l+la+ ++ ++r+ rr
  KIR64801.1 54 GFALLLAVSVVGTVRRSRR 72
                589*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 528.55
//
Query:       KIR64802.1  [L=818]
Description: hypothetical protein TK50_04165 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-39  133.7   0.1    1.5e-38  131.8   0.1    2.1  1  Helicase_C_3  Helicase conserved C-terminal domain
    0.00063   19.8   0.0     0.0012   18.9   0.0    1.4  1  WYL           WYL domain
  ------ inclusion threshold ------
        6.4    7.3   8.4       0.61   10.6   0.1    3.4  4  RCDG1         Renal cancer differentiation gene 1 protein


Domain annotation for each model (and alignments):
>> Helicase_C_3  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.8   0.1   2.5e-42   1.5e-38       1     127 []     522     644 ..     522     644 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.8 bits;  conditional E-value: 2.5e-42
  Helicase_C_3   1 livqaDltillegdsplaeearaaLaafAelesrpehahtyrltplSlrrAldaGltaeeiiefLerlskypvPqaleylirdvarryGklrlglea 97 
                   ++vqaDlt++++g  p++++++ +L+ +Ae es+ + a+++r+t +S+rrAldaG++a++++++++r s++pvPq+l+yl++dvar++G lr+g +a
    KIR64802.1 522 FLVQADLTVVVPG--PPDPALAGELEVVAEHESA-GGASVHRVTTASVRRALDAGYSADDLHDLFRRRSRTPVPQGLTYLVDDVARKHGGLRVG-SA 614
                   58***********..*******************.**********************************99***********************.9* PP

  Helicase_C_3  98 slvlrsddpalleelladkkiaklllrria 127
                     ++rsdd+all+e+lad+++++l++rr+a
    KIR64802.1 615 GGYVRSDDEALLAEVLADRRLEALAFRRLA 644
                   ***************************986 PP

>> WYL  WYL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     2e-07    0.0012       2      68 ..     752     814 ..     751     817 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2e-07
         WYL   2 vletlaeAieerrrvefrYrspagegeertvePyglvlkngrwYLvaydekrdeirtfrldRisele 68 
                  l+ l++A++++  v + Y ++ g+   r v+P+ +    g+ YL a+de+++ + tf+l+Ri+ + 
  KIR64802.1 752 ALAVLQQAVRDKALVWVGYVDAHGATASRLVRPVSI----GAGYLRAEDERTEMLHTFALHRITAAV 814
                 6899*****************666555******998....999********************9875 PP

>> RCDG1  Renal cancer differentiation gene 1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1    0.0001      0.61      32      60 ..      37      66 ..      29      77 .. 0.88
   2 ?   -2.7   0.3       1.4   8.3e+03       5      23 ..     252     266 ..     249     274 .. 0.58
   3 ?   -2.7   0.0       1.4   8.3e+03      32      45 ..     438     451 ..     427     457 .. 0.80
   4 ?   -0.6   0.1      0.32   1.9e+03      35      51 ..     685     702 ..     666     707 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0001
       RCDG1 32 slgwrvpsrsq.aptvdPleevelqigdaa 60
                +l+ r +sr + a+++d l++  lqi daa
  KIR64802.1 37 ALAVRAQSRVSvARALDGLDQFTLQILDAA 66
                6999*****6527****************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.4
       RCDG1   5 assPPpPPPssPssraaas 23 
                 +s    PPP + ++r+a  
  KIR64802.1 252 TS----PPPVAAVAREAKA 266
                 44....5666666665544 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.4
       RCDG1  32 slgwrvpsrsqapt 45 
                  l wr p rs+++ 
  KIR64802.1 438 LLDWRAPRRSRGRE 451
                 689***99999875 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.32
       RCDG1  35 wrvpsrsqa.ptvdPlee 51 
                  r p r+   +tvdPl  
  KIR64802.1 685 RRAPGRAPVgRTVDPLAS 702
                 56677765459****965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 5525.16
//
Query:       KIR64803.1  [L=207]
Description: haloacid dehalogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-15   55.3   0.0    3.1e-10   40.4   0.0    2.0  2  HAD_2           Haloacid dehalogenase-like hydrolase
    1.9e-14   54.5   0.7    4.1e-14   53.4   0.7    1.6  1  HAD             haloacid dehalogenase-like hydrolase
    1.2e-05   25.3   3.1    5.3e-05   23.2   3.1    2.0  1  Hydrolase_like  HAD-hyrolase-like
    0.00015   22.2   3.3     0.0026   18.1   3.3    2.1  1  Hydrolase       haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.027   14.6   0.0      0.072   13.2   0.0    1.8  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase
      0.032   13.8   0.2      0.044   13.4   0.2    1.1  1  AA_kinase       Amino acid kinase family


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0     1e-13   3.1e-10       3     118 ..       8     121 ..       6     125 .. 0.97
   2 !   13.0   0.1   2.7e-05     0.082     153     178 .]     143     168 ..     133     168 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1e-13
       HAD_2   3 FDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeeekieellrkyneekkkkevkpydgvkelLeeLkeagyklgiv 101
                 FDlD Tl+d+++ i++a++ l ++ g+  ++ +   + +g++lr  + + ++ e++e+ +e +++ y +   +  + p++g+ e++  ++++g ++ +v
  KIR64803.1   8 FDLDMTLVDSRPGIAAAYRALTARTGV-PVDADAAVSRLGPPLRVEIARWFPPEQVESAVEAYRELYPAYAIT-PTLPMPGAVEAIAAVHAHGGRVVVV 104
                 *************************99.999999**************************************9.9************************ PP

       HAD_2 102 Tsksreaveekleqlgi 118
                 Tsk  + ++ +l++lg+
  KIR64803.1 105 TSKLGRLARLHLDHLGL 121
                 *************9997 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.7e-05
       HAD_2 153 eeviyvGDsptDieaakkagikviav 178
                   ++yvGD++ D+ aa +ag+  +av
  KIR64803.1 143 GATLYVGDHTADMVAAGAAGVPGVAV 168
                 5689****************987765 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.7   1.4e-17   4.1e-14       2     184 ..       7     155 ..       6     159 .. 0.82

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 1.4e-17
         HAD   2 lfDfDgTLldgdsle..lllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalellaahr 98 
                  fD+D TL+d+ +++  +++   +r+g p +++a+  +l   l  e++r++  +  e   ++++ l++          a +i+p l +pga+e++aa++
  KIR64803.1   7 GFDLDMTLVDSRPGIaaAYRALTARTGVPVDADAAVSRLGPPLRVEIARWFPPEQVESAVEAYRELYP----------AYAITPTLPMPGAVEAIAAVH 95 
                 6**********999988888888888888889999999888888899999777777777776666665..........3356777888*********** PP

         HAD  99 aaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDl 184
                 a G rvvvv++ l +l++ +l++lg    la           e  l g + + e+k++alr+      +g+    + ++GD+ +D+
  KIR64803.1  96 AHGGRVVVVTSKLGRLARLHLDHLG----LAV---------DE--LAG-DLFAEEKATALRA------HGA----TLYVGDHTADM 155
                 *************************....999.........55..344.5666699999999......666....8899***9997 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   3.1   1.8e-08   5.3e-05      21      72 ..     142     190 ..      83     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.8e-08
                     GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEE CS
  Hydrolase_like  21 peevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddl 72 
                      +++l++GD   +D+ +A +aG+ +v+V+tG  ++++l+   +++  v+ dl
      KIR64803.1 142 HGATLYVGDH-TADMVAAGAAGVPGVAVATGPCSADELR--SAGASLVLADL 190
                     467*******.************************9988..55777777776 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   3.3   8.8e-07    0.0026      68     210 .]      48     162 ..       4     162 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 8.8e-07
                 HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  68 ayaigkpewltaldippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdavias 166
                  + +   +w+  +             q +   +a+   +++  ++i  p  ++p+a+ea+a+ +a g +vv++t+   + a+  +++lG         +
  KIR64803.1  48 PLRVEIARWFPPE-------------QVESAVEAYR--ELYPAYAI-TPTLPMPGAVEAIAAVHAHGGRVVVVTSKLGRLARLHLDHLG--------LA 122
                 4444444455555.............4444444444..55555555.5778*******************************9999999........33 PP

                 HCES.STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 167 diet.vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                  + +  +    e k  a+r        ++ VGD   D+ a+ aAg
  KIR64803.1 123 VD-ElAGDLFAEEKATALRAH----GATLYVGDHTADMVAAGAAG 162
                 33.348999999999999999....3589************9998 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.3   6.8e+03       3      25 ..       8      30 ..       7      35 .. 0.78
   2 ?   13.2   0.0   2.4e-05     0.072      15      55 ..      83     120 ..      78     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.3
                 EESTTTSEETTEE-TTHHHHHHH CS
  Hydrolase_6  3 fDidGvLwrgdkaipgaaealna 25
                 fD+d +L++ +  i  a +al+a
   KIR64803.1  8 FDLDMTLVDSRPGIAAAYRALTA 30
                 78888888888888888887764 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.4e-05
                  E-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHHHHTT CS
  Hydrolase_6  15 aipgaaealnalraagkpvvllTNnsskseeeyakkleklg 55 
                  ++pga+ea+ a++a+g +vv++T + ++  +    +l +lg
   KIR64803.1  83 PMPGAVEAIAAVHAHGGRVVVVTSKLGRLARL---HLDHLG 120
                  79*********************998887444...444444 PP

>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   1.5e-05     0.044      21     105 ..      85     167 ..      77     189 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHHTTEEEEEE--.HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTHGEEEE-G CS
   AA_kinase  21 rrlaeqiaalkesgnklvvVhGg.gsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaaglpavglsa 105
                   ++e iaa + +g ++vvV++  g  ++ +l++  gl  +ela g++  +e+a  +  + a + +g +++a ++aag + v+  a
  KIR64803.1  85 PGAVEAIAAVHAHGGRVVVVTSKlGRLARLHLDH-LGLAVDELA-GDLFAEEKATALRAHGATLYVG-DHTADMVAAGAAGVPGVA 167
                 568999****9************99999999999.********9.7777777766666655554444.466666666654444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1504.67
//
Query:       KIR64804.1  [L=128]
Description: cold-shock protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-14   51.1   0.0    1.3e-13   50.5   0.0    1.3  1  CSD       'Cold-shock' DNA-binding domain
     0.0015   18.2   0.0     0.0027   17.4   0.0    1.4  1  OB_RNB    Ribonuclease B OB domain


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   1.5e-17   1.3e-13       2      64 ..       3      63 ..       2      65 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.5e-17
                EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEE CS
         CSD  2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVt 64
                tG Vkw++a+kg+GF+t ++g+ dvF+   a+      +L+ gq+V F+vv++ +g +A  V+
  KIR64804.1  3 TGRVKWYDAAKGYGFVTSDEGG-DVFLPKGALPAGV-TDLKGGQRVDFSVVDSRRGAQAMGVK 63
                79********************.*****99998887.**********************9997 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     3e-07    0.0027       7      28 ..      12      32 ..       4      34 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3e-07
                SSS-EEEEECT.TEEEEE-HHH CS
      OB_RNB  7 kkGFGFlipdegkeDifippeq 28
                +kG+GF+  de + D+f+p+  
  KIR64804.1 12 AKGYGFVTSDE-GGDVFLPKGA 32
                79********7.*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 926.00
//
Query:       KIR64805.1  [L=294]
Description: 1,4-dihydroxy-6-naphthoate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-90  302.6   0.0    2.8e-90  302.4   0.0    1.0  1  VitK2_biosynth  Menaquinone biosynthesis


Domain annotation for each model (and alignments):
>> VitK2_biosynth  Menaquinone biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.4   0.0   1.6e-94   2.8e-90       1     265 [.       3     271 ..       3     272 .. 0.95

  Alignments for each domain:
  == domain 1  score: 302.4 bits;  conditional E-value: 1.6e-94
                     EEEEEESSHHHHHHHHHHHTTSS..SGCCEEEEEE-HHHHHHHHHTTS-SEEEEEHHHHTTCTTTEEEESEESCEEEESSSSEEEEE........ CS
  VitK2_biosynth   1 lrlGhspylNdlflfyaLvegkvdsegleveivledpetlnrallegelDvakiSsaayariaddyalLpdlsisalGrvygvllvs........ 87 
                     l+l++sp++Nd+f+f aLv+g+v++++ +ve++++d++ +n+a+++g++D++k+S+aa++++ ddy+lLp  +++alGr++g+l+++        
      KIR64805.1   3 LTLAISPCPNDTFVFDALVHGRVPGAP-PVEVTYADVDVTNTAAERGAFDLVKVSYAALPWLLDDYHLLP--CGGALGRGCGPLVLTrpdraisg 94 
                     689*********************996.9*****************************************..*********************98 PP

                     .SS-CCC-SSS..T.EEEESTTTSHHHHHHHHHHCSTS----EEEEE-GGGHHHHHHTTS.SEEEEECCHHHTGGGGTTEEEEEHHHHHHHHHSS CS
  VitK2_biosynth  88 .kvpleelegel.gkrvalpgestTsvlLlrlllaeryglkprlvevpfdeieaavlege.dagLlIgesaltyaeeglkkvlDLgelWeeltgl 179
                        + +++ ++l g++va+pg++tT++lL+rl+ aer   + r+++vpf+ei++av++g+ dagL+I+e+++ty+++gl+ ++DLge+We  tgl
      KIR64805.1  95 qAGNEQPDTADLsGATVAVPGDRTTAYLLFRLWSAERP--PARIEVVPFHEIMPAVAAGRyDAGLVIHEARFTYQRHGLTALVDLGEWWEGDTGL 187
                     733345666677999**********************4..66***************************************************** PP

                     -EEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHCCSTTS.HHHHHHHHHHHCSHHHHS-CHHHHHHHHHHHHHHH CS
  VitK2_biosynth 180 PlvlglwvvrrdlaaeaakeleealreSveyalahldevaeyaaeraqemddevlekhlelYvnelsydlgeegragleeflelaa 265
                     P++lg++++rr + +    e+  ++reSv+ a+a+++++++y++ +aqem+++v+++h+ lYvne++ dlg++g a++e++l++aa
      KIR64805.1 188 PIPLGAILARRGVVDPV--EAAGWIRESVRQAWADPEASRPYVLSHAQEMEPDVVDRHIALYVNEFTADLGDAGFAAVEALLGRAA 271
                     ************97765..8999*************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2167.99
//
Query:       KIR64806.1  [L=562]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-12   45.7  29.6    4.2e-12   45.7  29.6    1.5  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7  29.6   2.4e-16   4.2e-12      14     350 ..      79     416 ..      61     424 .. 0.70

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 2.4e-16
       MFS_1  14 ilgpalplalaedlgispseigllltlyalgaavaslplGrlsd..rfGrrrvlllglllfalglllll..fasslwlllvlrvlqGlgagalfpagaa 108
                 ++++++p      lg + s + l l + ++ +a +++++G+l d  r+Grr  l +++l+ a+ ++l++  + +++ l  ++  + +l   a+  a  a
  KIR64806.1  79 TIFFNVP------LGEARSKVALYLLVTMVPFAMLAPVVGPLLDhfRHGRRYALAATMLGRAFLAWLISdyM-HGFGLYPAAFGVLALS-RAYGVARSA 169
                 3333333......5556667777777788888************5556****************88888966.9988777777777777.699999999 PP

       MFS_1 109 liadwfpk.eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkd 206
                 ++ ++ p+    +++ + +s+   ++ +l +++g +   ++g +++  ++ +++l+++v+  +l + ++ +++++   e+    +p+pl+++ +    d
  KIR64806.1 170 AVPRLLPEgLGLSQVGARASVYGTVAGALVAPIGLAAF-WFGPQWPLRVASVIFLVGMVI--ALRLPPRADSEPP---ER----VPRPLRSLGRRAAGD 258
                 99999999344444445555544555555555655555.899***************885..3333333333333...23....455666655566666 PP

       MFS_1 207 pvlw......illialllfffgfsglltllplylqevlgls...........glllaglllallalvgailallagrlsdrlgrrrrlllallllllaa 288
                 ++l        l+ia+ll+++ +  ++ +l l+l + l+ +           +  +++  l+l++ + a++++la+++ +rl  +r++ +  ++++++a
  KIR64806.1 259 RPLGrgrpsgRLVIASLLGAALLRVVYGFLLLFLAFALKKGdlttdffgrelS-AEMA--LGLVGGALAVGSFLATAVGTRLRIHRPTAIQSSSTIIVA 354
                 65623334454444444444444444444444333333333444667765444.5666..899999999999*******************99999999 PP

       MFS_1 289 lglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslgga 350
                    +l+    s ++++l+++++++++g++  ++ a +++ +p++ +++ ++   ta  l+ +
  KIR64806.1 355 GTAVLATIQFSLPMVALLCLVATLASGVAKLAVDASIQERIPERLRASSFAHSETALMLAFV 416
                 999999999999999999999999*******************9999877766666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 4407.37
//
Query:       KIR64807.1  [L=279]
Description: hypothetical protein TK50_04200 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-86  289.6   0.1    1.9e-86  289.1   0.1    1.2  1  DUF3027          Protein of unknown function (DUF3027)
  ------ inclusion threshold ------
      0.083   13.0   0.0        0.2   11.8   0.0    1.6  2  MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
       0.14   12.5   0.1       0.21   11.9   0.1    1.2  1  DrsE             DsrE/DsrF-like family


Domain annotation for each model (and alignments):
>> DUF3027  Protein of unknown function (DUF3027)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.1   0.1   3.1e-90   1.9e-86       1     192 [.      42     234 ..      42     235 .. 0.98

  Alignments for each domain:
  == domain 1  score: 289.1 bits;  conditional E-value: 3.1e-90
     DUF3027   1 GehlgveaegervvthrfeaklpgYrGWewavtlarasrakkvtvsevvLlpgedallapewvPwkeRlrpgDlgpgdllpteedDerlepgyeasede 99 
                 G+hl+++ae++rvvth+fe++l gYrGW+wavt++r++r++kvtv+e+vLlpg+dallap w+Pw+eRl+pgDlgpgdllpt +dDerl+pgy  s+d+
  KIR64807.1  42 GDHLQAVAEADRVVTHYFECRLSGYRGWRWAVTVTRVPRSRKVTVCETVLLPGSDALLAPGWLPWQERLKPGDLGPGDLLPTPPDDERLAPGYVLSDDP 140
                 89*********************************************************************************************8888 PP

     DUF3027 100 eeeeevaeelglgrkrvlsregreeaaeRWyegeagpkselakaak..aaCstCgflvplagslgqafGvCaNelspaDgrvvsldygCGaHsev 192
                 + +ee+a+elglgr rvlsregr+eaa+RWy+g++gp++++++aa+  a+C tCgf++plag+l+qafG+C+N ++p+Dgrvvs+d+gCGaHse+
  KIR64807.1 141 A-VEETAWELGLGRPRVLSREGRSEAAQRWYDGDHGPSAPISTAAPaaARCGTCGFYLPLAGALRQAFGACGNFYAPDDGRVVSADHGCGAHSET 234
                 7.89*************************************999987789*******************************************97 PP

>> MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.4e-05       0.2      12      92 ..      34     114 ..      24     116 .. 0.93
   2 ?   -3.5   0.0       1.8   1.1e+04      68      93 ..     149     174 ..     141     175 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.4e-05
  MaoC_dehydrat_N  12 aevereavrefakavgetnpayldeeaaraagyrsliaPptflivlatkapellealgidlsrllhgeqefeyhepiraGD 92 
                      +eve ++v ++ +av e++ + +    +r +gyr+     t++ v   ++  + e++ +++s  l +  ++ ++e++++GD
       KIR64807.1  34 TEVEPSDVGDHLQAVAEADRVVTHYFECRLSGYRGWRWAVTVTRVPRSRKVTVCETVLLPGSDALLAPGWLPWQERLKPGD 114
                      79*******************999999*99*****************9886777**************************9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.8
  MaoC_dehydrat_N  68 lgidlsrllhgeqefeyhepiraGDe 93 
                      lg+   r+l  e + e +++ + GD+
       KIR64807.1 149 LGLGRPRVLSREGRSEAAQRWYDGDH 174
                      56677788888888888999998886 PP

>> DrsE  DsrE/DsrF-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.6e-05      0.21      78     116 ..      20      56 ..      15      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.6e-05
                 HHHHHHTT--GGGE-T--EEEE-HHHHHHHHHH-SEEEE CS
        DrsE  78 gqaakargldededlgvgvevsglgelaelqnegdrvit 116
                 + +a+a  ++  + +  +ve+s++g++ ++++e+drv+t
  KIR64807.1  20 QVCAAAVEVA-RDAI-TEVEPSDVGDHLQAVAEADRVVT 56 
                 6799999999.6688.89*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2123.86
//
Query:       KIR64808.1  [L=92]
Description: hypothetical protein TK50_04205 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-11   42.2   0.8      1e-10   41.7   0.8    1.2  1  DUF2530     Protein of unknown function (DUF2530)
  ------ inclusion threshold ------
      0.033   14.4   0.1      0.053   13.7   0.0    1.3  1  DUF2407_C   DUF2407 C-terminal domain
       0.18   11.4   0.5       0.31   10.7   0.5    1.4  1  ATP-synt_J  ATP synthase j chain
       0.26   10.9   3.5       0.33   10.6   3.5    1.2  1  DUF4131     Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> DUF2530  Protein of unknown function (DUF2530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.8   2.2e-14     1e-10       4      74 ..       6      82 ..       3      87 .. 0.72

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 2.2e-14
     DUF2530  4 PeLprrLtdp.rpvivvgtllWlvalvvl......lvvgdaleswlpvclaGlvvGllGlaiflwQRrAaRrGsrgAq 74
                P+ p+ L  p +p++v+g ++W+va +vl      +++++  ++wl++claG++ G+ Gla+++    A Rr +r A 
  KIR64808.1  6 PPRPEPLDPPmVPFAVAGLVAWAVAGLVLllffrgWLTEHGHQDWLWICLAGFLWGFPGLAVMM-RHDANRRRRRAAA 82
                55566666552699**********98888444444444444455******************87.4667777777664 PP

>> DUF2407_C  DUF2407 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.2e-05     0.053      87     124 ..      44      79 ..      40      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.2e-05
   DUF2407_C  87 skanedlliGlliGfflglfalllllkeegllnkrqkm 124
                 ++ ++d l+ +l Gf++g+ +l ++++++   n+r++ 
  KIR64808.1  44 EHGHQDWLWICLAGFLWGFPGLAVMMRHD--ANRRRRR 79 
                 57799****************99999999..4555443 PP

>> ATP-synt_J  ATP synthase j chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   6.8e-05      0.31       8      21 ..      14      27 ..       9      35 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.8e-05
                SSSHHHHHHHHHHH CS
  ATP-synt_J  8 kpmwPFfaaglivl 21
                 pm+PF +agl+ +
  KIR64808.1 14 PPMVPFAVAGLVAW 27
                59********9976 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.5   7.4e-05      0.33       5      55 ..      24      73 ..      18      88 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.4e-05
     DUF4131  5 lalvllalllllllllllllrrrprrrvllllllllllallgfalrapqpn 55
                l ++++a l+lll+++++l     ++ +l+++l+ +l ++ g+a+  ++ +
  KIR64808.1 24 LVAWAVAGLVLLLFFRGWLTE-HGHQDWLWICLAGFLWGFPGLAVMMRHDA 73
                567888888888888888764.78888888888888888877777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 703.04
//
Query:       KIR64809.1  [L=437]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-45  153.5  37.7      8e-45  153.2  37.7    1.0  1  MFS_3            Transmembrane secretion effector
      1e-20   74.0  53.1    3.8e-19   68.8  40.8    2.1  2  MFS_1            Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.2  37.7     9e-49     8e-45       4     399 ..       9     407 ..       6     429 .. 0.93

  Alignments for each domain:
  == domain 1  score: 153.2 bits;  conditional E-value: 9e-49
       MFS_3   4 faPlrqkvFrviWiaslvsnlGtliqevaasWlmtdisa.splmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgll 101
                 f  l+ + +r     +l+  +G ++  +a  Wl+ ++s  s ++  +v a    P++ll++l+G laD +d+R +l+++ ++  + s  + +l+++gl+
  KIR64809.1   9 FQSLQVRNYRLFASGQLIKLIGVWMMFIAQDWLVLELSDdSATALGVVTALQFTPVLLLTLLSGRLADRYDKRLLLFVANAFWTVLSFGMSLLVLTGLV 107
                 6667778888888999999******************9637888999**************************************************** PP

       MFS_3 102 spwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsylalivallrwkrev..rkssl 198
                 + w + +++ l+g+  a+ +P  qA v+elv  + +p+A  Ln+  +n aR vGPA++G+ +aav    +f ++als l ++++++r++++   rk+ l
  KIR64809.1 108 QLWHVFVFAALLGVANAVETPVRQAFVSELVGTSLLPNALSLNAAVFNSARIVGPAVAGLAIAAVDVGPVFLFTALSSLGPLATVVRMRPAElhRKDLL 206
                 ****************************************************************************************99752244556 PP

       MFS_3 199 p.rEkllealraglRftaasreikavlvRaalFglsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAl 296
                 p +E+  + + +glR++a  +++   ++   + g+s       L  +a+   +++a+ +G++ +al vGA++gal  +  R+r  s  lvl aav++A+
  KIR64809.1 207 PvAERDSARVVDGLRYVARRPDLLLPMAVMSVIGMSLFNFQLTLAALAKTVFKTGAASFGLFSTALAVGALVGALAGTGRRSR-PSVWLVLGAAVGCAV 304
                 646888899****************************99999999*****************************998775555.6789*********** PP

       MFS_3 297 vllslalasslwvavlvlllgGaaWitalstlnvavqlavPrWvvgRalavYltvlaGglaaGsllWGavaealsvtlaLlaaaaalllaaaillllkl 395
                     ++la+  w++v  ll +G   +    + n  vql + +  +gR++a+++ v+ G+   G+ + G vae+ ++  ++ ++++  l++a++ l  +l
  KIR64809.1 305 FGTLVGLAPAYWMVVALLLPAGFFMVFFAQSANQRVQLGTDAAFRGRVMALWVLVFLGTNPVGAPIIGWVAERFGAGASIWIGGLISLATALLALAWQL 403
                 *************999999999999999999****************************************************************9999 PP

       MFS_3 396 pele 399
                 ++  
  KIR64809.1 404 RRSG 407
                 9765 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8  40.8   4.2e-23   3.8e-19      13     342 ..      32     357 ..      20     360 .. 0.72
   2 !   16.5  28.5   3.3e-07     0.003      39     178 ..     266     408 ..     265     430 .. 0.84

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 4.2e-23
       MFS_1  13 silgpalplalaedlg.ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa....sslwlllvlrvlqGlgagalfpa 105
                 ++ ++a   +l  +l   s++++g +++l +   ++++l+ Grl+dr+  r +l+++ +++ + ++ ++ ++     +lw ++v+ +l G++ ++ +p+
  KIR64809.1  32 WMMFIAQD-WLVLELSdDSATALGVVTALQFTPVLLLTLLSGRLADRYDKRLLLFVANAFWTVLSFGMSlLVltglVQLWHVFVFAALLGVANAVETPV 129
                 44333333.4444433257888999***********************999977777777777745555433446899999****************** PP

       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkall 204
                  +a++++++  +  + a++l +a f+ + i+gp+++gl ++++    vf++ a+ sl  +  ++   p+e +++   + +e+      a +v++++++ 
  KIR64809.1 130 RQAFVSELVGTSLLPNALSLNAAVFNSARIVGPAVAGLAIAAVDVGPVFLFTALSSLGPLATVVRMRPAELHRKDLLPVAER----DSARVVDGLRYVA 224
                 *********************************************************9977666777777777777777777....88888889***** PP

       MFS_1 205 kdpvlw..illialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt 297
                 ++p l+  +++++++++++++  +  +l  ++++v++ +    gl++++  la++alvg        +l+    r r+ ++ +l+++++++ +  l   
  KIR64809.1 225 RRPDLLlpMAVMSVIGMSLFN--FQLTLAALAKTVFKTGaasfGLFSTA--LAVGALVG--------ALAGTGRRSRPSVWLVLGAAVGCAVFGTLVGL 311
                 ***996334444444443222..33333334688998883344444444..44444444........33332222334444444444444444444444 PP

       MFS_1 298 ssavllllvlvl.iGfglgfvfpsllalasdlappeeagtasglfn 342
                   a +++++l+l +Gf++ f+  s++  ++  + +  +g++++l  
  KIR64809.1 312 APAYWMVVALLLpAGFFMVFFAQSANQRVQLGTDAAFRGRVMALWV 357
                 3556666666666********************99*******9976 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 3.3e-07
       MFS_1  39 tlyalgaavaslplGrlsdrfGrrr.vlllglllfalg.lllllfa...sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfsl 132
                 +l++ + av++l+++  ++  Grr+   ++ +l+ a+g +++++++   + +w++++l + +G+++ +++ +++  +   +    rgr+++l+ + f  
  KIR64809.1 266 GLFSTALAVGALVGALAGT--GRRSrPSVWLVLGAAVGcAVFGTLVglaPAYWMVVALLLPAGFFMVFFAQSANQRVQLGTDAAFRGRVMALWVLVFLG 362
                 5778888888887777777..89988999999999999444444434559999*************88888888888888999**************** PP

       MFS_1 133 GailgpllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                    +g+++ g++a+ +g  a+ +i +++sl  ++l+l++ +++  +
  KIR64809.1 363 TNPVGAPIIGWVAERFGAGASIWIGGLISLATALLALAWQLRRSGA 408
                 **********************************988877665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 2909.53
//
Query:       KIR64810.1  [L=169]
Description: hypothetical protein TK50_04225 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1233.14
//
Query:       KIR64811.1  [L=328]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-76  256.0   0.0    5.1e-76  255.7   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.7   0.0   2.8e-80   5.1e-76       1     292 [.      15     312 ..      15     313 .. 0.95

  Alignments for each domain:
  == domain 1  score: 255.7 bits;  conditional E-value: 2.8e-80
                   .EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-....TTTHHHHHHHHHHHH-TTTGGG-EEEEEE..--SSSTTSSSS-HHHHHHHHH CS
  Aldo_ket_red   1 elglGtwqlgskeeiskeealellrraleaGinffDtAevY....gkgqseellGealkksrkkreeviiatKv..dlrdaeiksglskeniresle 91 
                   +l+lGt+++g   ++s+++++++++rale+GinffDtA++Y    g+g  e+++G+++++ +++re+v++atKv  +++d ++++gls+ +i++++e
    KIR64811.1  15 RLCLGTMNFGP--QTSEPDSYAVMDRALEHGINFFDTANIYgwqtGEGITEQIIGRWFAQGGGRREKVVLATKVygKMGDWPNEQGLSARHIIRACE 109
                   59********7..8************************************************************999999999************** PP

                   HHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT- CS
  Aldo_ket_red  92 eslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynllreleeegllelckkkgv 184
                   +sl+rL+td +Dl+++H + +++p  ee+++a+e lv +Gk+ ++G Snf+ +++ +a    ++ + + +v+ q  ynll++  e +++++++++g+
    KIR64811.1 110 DSLRRLQTDVIDLYQMHHVSRATP-WEEIWQAMETLVAQGKVVYVGSSNFAGWHIGQAqaaaQRRNFLGLVSEQSIYNLLTRAVELEVVPAAQHYGL 205
                   ************************.***********************99955555555779*********************************** PP

                   EEEEBSTTGGGTTGTTTSS---SSSCCC-------.TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG-- CS
  Aldo_ket_red 185 pliaysplggGlltgkyqseedkedkeprkdlkrd.ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelk 280
                   ++i++spl+gGll+g  ++ ++ +    r+  +r  e +++++ ++e++++++++ g ++a +al ++ls+p+v+ +i+g+++i+ql+ +l+al+++
    KIR64811.1 206 GIIPWSPLHGGLLSGALRKMAEGGAA--RSAAGRAaEGLAEHRPTIEAYEKFCADLGHDPADVALGWLLSRPGVTAPIIGPRTIDQLDRSLGALDVR 300
                   ******************99987744..33334447************************************************************* PP

                   --HHHHHHHHHH CS
  Aldo_ket_red 281 lseeevaeldel 292
                   l+e  +a+ldel
    KIR64811.1 301 LDEAALARLDEL 312
                   **********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2523.51
//
Query:       KIR64812.1  [L=362]
Description: hypothetical protein TK50_04240 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-46  156.1   0.0    1.1e-45  155.7   0.0    1.2  1  DUF3071   Protein of unknown function (DUF3071)


Domain annotation for each model (and alignments):
>> DUF3071  Protein of unknown function (DUF3071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.7   0.0   5.9e-50   1.1e-45       1     165 [.       1     170 [.       1     171 [. 0.92

  Alignments for each domain:
  == domain 1  score: 155.7 bits;  conditional E-value: 5.9e-50
     DUF3071   1 MreLrlvglesdgeslvleaeegeefflavddeLraalreeser.......qaeaeeesslrpreIQariRaGasveevaeeagvsververyahPvla 92 
                 Mr +r+v+l++dg++lvl++e g+  +l++d+++  al+ e          +++ +   sl+pr+IQa+iR+G+s+e+va+ agv+v+rv rya+Pvl+
  KIR64812.1   1 MRPVRFVALSEDGQALVLADEVGRLLALPIDERIAGALHAEPGApplavvpNTTDHPLPSLSPRDIQAKIRSGESAEDVARVAGVPVDRVLRYAGPVLQ 99 
                 999********************************9999953223445554666677777*************************************** PP

     DUF3071  93 ERariaelarkahvvredgpakltLgevlaealaargvdleeveWdAwreeseqWvvtvswkageseneAews 165
                 ERa++a++ar+++++ +++p+   L+ev++ +la++g+d+e+++WdA+r+++++W++ ++w +g+++++A w+
  KIR64812.1 100 ERAMLAQHARRTRLKGAEKPT--PLAEVVNGRLAQHGIDTEKISWDAYRRDDGTWRIIATWPSGKATAQAVWD 170
                 **************8777777..8************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2512.79
//
Query:       KIR64813.1  [L=375]
Description: phosphoserine aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-16   59.7   0.0    7.5e-13   48.2   0.0    2.1  2  Aminotran_5  Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   2.1e-05      0.38       7      77 ..      23      88 ..      20      96 .. 0.83
   2 !   48.2   0.0   4.2e-17   7.5e-13     147     334 ..     149     335 ..     140     364 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 2.1e-05
                 TS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHH CS
  Aminotran_5  7 AttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlv 77
                 +++++ ++++ al++      a +  +++h++k + ++v   r  +ae++  ++ +e+i   G+t+a+  v
   KIR64813.1 23 GPSKVRPAAVSALADA-----ATGFLGTSHRQKTVRDQVARLRRGIAEFYSLPEGYEVILGNGGTTAFWEV 88
                 6777777777777777.....4455578899999999****************************998655 PP

  == domain 2  score: 48.2 bits;  conditional E-value: 4.2e-17
                  SBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTT.TTSSTT-EEEEEEHHHHHTS..SS.STTSE.EEEET.TEEEE CS
  Aminotran_5 147 hvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghK.llgPtGiGvlyvrkellekleplllggemv.eevsl.eettf 241
                  +++++tG+  p+++++    ++g l+lvDa++a+g   +dv++++v  ++f  +K +    G+ +  +++++l ++  ++ +g ++ +  +l   +  
   KIR64813.1 149 QNETSTGVAVPINRVA--GADEGSLLLVDATSAAGGLAVDVAETDV--YYFAPQKcFASDGGLWLALMSPAALDRAAEIKASGRYIpAFLDLvTAIDN 242
                  799************9..6678**********************99..*******55555679999*****************998445677777778 PP

                  HCTTGGGS.SS--HHHHHHHHHHHHHH.HCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEE.TTCSHHHHHHHHHHTTEE CS
  Aminotran_5 242 aeapskfeaGTpnvagiiglgaaleyl.eeigleaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnf.kgvhaedvatlLdeegIa 334
                  +   + ++  Tp  a i   ++  +++ e++gl+ ++k+ +e a  ++   + +   + +++d+a r++ + ++ f +gv+a+ +a++L+ +gI 
   KIR64813.1 243 SRLEQTYN--TPALATIFLAAEQTDWMnEQGGLAWAAKRTAESAGIVYGWAERSAVATPFVTDPALRSNVVATIDFaDGVDAAAIAKALRANGIV 335
                  88899999..*****************8889999999999999999999999999999999***************99**************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2710.09
//
Query:       KIR64814.1  [L=368]
Description: citrate synthase 2 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-87  292.0   0.0    4.3e-86  289.2   0.0    1.8  1  Citrate_synt  Citrate synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> Citrate_synt  Citrate synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.2   0.0   2.4e-90   4.3e-86       1     360 [.       7     343 ..       7     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: 289.2 bits;  conditional E-value: 2.4e-90
                   GGTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHHS-HHHHHHHHHHSS....---HHHHHHHHHHHHCTTS--HHHHHHHHCSSTTS-HHHHHHH CS
  Citrate_synt   1 glrgvaaleteisevdgekgelrYRGydieeLaeekssfeevaylLltge....lPtkeelkefkeelaearklpekvlealealpkdahpmavlra 93 
                   gl+gv+a etei+e d+e g lrYRG+die+L+ ++ sf  v++lL+ g+    l     ++ f   +++   +  +v++a+    +++ p   l++
    KIR64814.1   7 GLEGVVAFETEIAEPDREGGALRYRGVDIEDLI-GQVSFGNVWALLVDGRfgpgL---PPAEPFPVPVHSG-DIRVDVQSAV----AMLAPYWGLSQ 94 
                   89*******************************.8***************64444...4688899988887.4455553333....34557777777 PP

                   HHHHHHHHSTTCTCHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHTTS.--.-..--TTSSHHHHHHHHHHSS---HHHHHHHHHHHHHHS--SS CS
  Citrate_synt  94 avsalsaddeeseakeeseeaalrd...alkliAklptiaaaiyrarlgrepl.e..pddklsyaenflymlrgkkpdeeeaklldlalvlhaDHel 184
                    +     +          +e+ +r    al+++A+ +  +          + + +   d+ ++++e+f++ +rg +pd++++k++d++++  a+H+l
    KIR64814.1  95 LLDISDEQ---------AREDLARVsvtALSFVAQSARGLG--------LPAVpQkeIDKAETIVERFMKRWRG-EPDPRHVKAVDAYFISAAEHGL 173
                   77664422.........233344420002223333222222........22222211446689***********.********************** PP

                   SHHHHHHHHHHTTT--HHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHSSGG.GHHHHHHHHHHTTTS--TTBC-SSSSS--HHHHHHHHHHHHHHTC CS
  Citrate_synt 185 naSTfaarvvaStladlysaiaagigalkGplhgganeavlkmleeigsaeveveeylekvlakekerlpGfGHrvykksDpRakilkelaeelaee 281
                   naSTf+ar+vaSt+ad  ++i++gigal+Gplhgga ++vl mle ++++  ++e y++ vl+++ erl+GfGHrvy+ +DpRa++l++ a+el + 
    KIR64814.1 174 NASTFTARIVASTGADAAACISSGIGALSGPLHGGAPSRVLSMLEAVERSG-DAEGYVKGVLDRG-ERLMGFGHRVYRAEDPRARVLRRTAKELGA- 267
                   ***********************************************6665.***********86.***************************976. PP

                   HTHHHHHHHHHHHHHHHHHHHHCHH.GCT-EB-THHHHHHHHHHTT--GGGHHHHHHHHHHHHHHHHHHHHHHT------ CS
  Citrate_synt 282 kgkdpllklaeeleevapevlkeke.eknlypNvDfysgvlyralgipeelftvlfaisRvaGwlAhileqladnkiiRP 360
                       p +++ae+le++a + l++++ ++ l +Nv+f+s+v+++   +p ++ft++f ++R+ Gw+Ahileq++ ++++RP
    KIR64814.1 268 ----PRFEIAEALEKAALAELQARRpDRVLATNVEFWSAVVLDFAEVPAHMFTSMFTCARMGGWSAHILEQKKLQRLVRP 343
                   ....9**************999999*9*********************************************999****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2522.24
//
Query:       KIR64815.1  [L=226]
Description: pyridoxamine 5'-phosphate oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-20   72.0   2.6    6.3e-20   71.0   2.6    1.6  1  PNP_phzG_C      Pyridoxine 5'-phosphate oxidase C-terminal di
    2.2e-19   69.4   0.0    3.6e-19   68.7   0.0    1.3  1  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> PNP_phzG_C  Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   2.6     7e-24   6.3e-20       1      43 []     178     226 .]     178     226 .] 0.88

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 7e-24
  PNP_phzG_C   1 WgGyrvvPeeiEFWqgrpsRlHdRfrYereeed......gkWkierLsP 43 
                 WgG+rv+Pe++EFWqgr+sRlHdR+r++r+  d      g+W++erL+P
  KIR64815.1 178 WGGLRVRPETVEFWQGRASRLHDRLRFRRTAPDpgpaddGRWVVERLAP 226
                 ****************************976523445569********9 PP

>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0     4e-23   3.6e-19       3      88 .]      40     124 ..      38     124 .. 0.94

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 4e-23
                     HHHHHHHHHSSEEEEEEEETTSEEEEEEEEEEEETTTTEEEEEEETTSHHHHHHHHH-EEEEEEEETTGSEEEEEEEEEEEESCHH CS
  Putative_PNPOx   3 eelreflaeskavvlATvdedGrPnvspvllkagdgrdgivfatnadsrklrnleenprvallflddelgrgvrieGtaelvsdge 88 
                     +++++ l e++a+vl+T+d+ GrP++++vllk  d + g+v++tn  srk+ +  +np+++l+f +++  r+v + G++e v+++e
      KIR64815.1  40 DAVASGLPEPNAMVLGTADAAGRPSGRTVLLKGYDPQ-GFVLFTNHGSRKGTEALANPYASLVFPWFPIQRQVVVAGRIEPVDRAE 124
                     67888899************************77777.*******************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       209  (0.0116571); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1875.72
//
Query:       KIR64816.1  [L=432]
Description: MFS transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-34  119.6  42.8    1.5e-34  119.3  42.8    1.0  1  MFS_3     Transmembrane secretion effector
    1.1e-18   67.3  61.9    2.8e-12   46.2  26.5    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3  42.8   1.7e-38   1.5e-34       4     392 ..      19     416 ..      16     431 .. 0.89

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 1.7e-38
       MFS_3   4 faPlrqkvFrviWiaslvsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalglls 102
                 + Plr  v+r iW+ + v+ lG    +va+   m  ++     v l+ +aa LP++++ +  Ga+aD  drR vll+ q++l ++ v l   a++ + s
  KIR64816.1  19 LRPLRVPVYRRIWVGNSVAMLGFQFTAVAVPVEMFALTRDSFWVGLLGVAAFLPLLVFGLWGGAVADARDRRAVLLVSQAVLWASMVGLLAQAVFRVGS 117
                 67************************************************************************************************* PP

       MFS_3 103 pwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaa..vGaa..lafavnalsylalivallrwkr.....e 192
                 p+lll+l  l ++G+a+   a  As++ lv+++ vpaA +Ln      a   GP l+G++ aa  vG a  +a++v+++ + a ++a lr+       +
  KIR64816.1 118 PVLLLVLVALQSVGFAVSGAARTASIPRLVPAELVPAASTLNFTTHTAASVLGPLLAGLIFAAweVGVAlpIAYGVDTVFFTAAVWATLRMPAlppepD 216
                 *************************************************************985667763369**************999865111113 PP

       MFS_3 193 vrksslprEkllealraglRftaasreikavlvRaalFglsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaa 291
                    +  pr   l+++ +glR+ a+ + +  +++   +  + a    aL P +a ++ +g+a+v G l++a+ +G +lg+l++  + +   +   + +a+
  KIR64816.1 217 PDGDGSPRRAGLASVVDGLRYLATTPVLLLSFAIDLIAMVLAMP-RALFPEIAEERFGGGAAV-GWLFSAIAIGSMLGGLTSGWIGRLHRQGVALVCAV 313
                 4446689999999**********999887777766665555544.69***********99976.*********************99999999999*** PP

       MFS_3 292 valAlvllslalasslwvavlvlllgGaaWitalstlnvavqlavPrWvvgRalavYltvlaGglaaGsllWGavaealsvtlaLlaaa..aalllaaa 388
                 v+  l +++++la++lw++v  l+++Gaa +++    ++   +  P+ ++gR   v  +v+aGg  +G l  G++a   +  +a   ++  aa+l++ +
  KIR64816.1 314 VGWGLAIAAAGLARQLWLVVGLLAVAGAADLVSAVLRQTMLLVHAPDRMRGRLQGVNTVVVAGGPRLGDLRAGTMAAGFGTGVAWVGGGlaAAVLAVLL 412
                 *********************************9999999***********************************999888777665541133444444 PP

       MFS_3 389 illl 392
                 + ++
  KIR64816.1 413 VAVF 416
                 3333 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2  26.5   3.1e-16   2.8e-12       2     231 ..      31     265 ..      30     273 .. 0.77
   2 !   27.8  29.6   1.2e-10   1.1e-06       7     178 ..     252     422 ..     246     431 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 3.1e-16
       MFS_1   2 llaaflsalarsilgpalplalaedlgispse..igllltlyalgaavaslplGrlsdrfGrrrvlllgl.llfalglllllfa.....sslw.lllvl 91 
                 +++  +++l++ ++++a+p  +   + ++ ++  +gll ++ +l  +v+ l +G+++d   rr vll++  +l+a++ + ll a      +++ lllvl
  KIR64816.1  31 WVGNSVAMLGFQFTAVAVPVEM---FALTRDSfwVGLLGVAAFLPLLVFGLWGGAVADARDRRAVLLVSQaVLWASM-VGLL-AqavfrVGSPvLLLVL 124
                 77888999***********544...566666666**************************99998888861555555.4444.222467889999**** PP

       MFS_1  92 rvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllll....peepperkrk 182
                  +lq++g +++ +a  a i +++p e  + a  l  ++  ++++lgpll+gl+ +++      + ++ + ++++  a++  + l     p ep + +  
  KIR64816.1 125 VALQSVGFAVSGAARTASIPRLVPAELVPAASTLNFTTHTAASVLGPLLAGLIFAAWEvgvaLPIAYGVDTVFFTAAVW--ATLRmpalPPEPDPDGDG 221
                 ******************************************************9999888877777777777777733..233333336666666666 PP

       MFS_1 183 spkeeekgtgpaplvpawkallkdpvlwillialllfffgfsglltllp 231
                 sp++     g a++v+++++l + pvl+ l +a+ l+++++++  +l+p
  KIR64816.1 222 SPRRA----GLASVVDGLRYLATTPVLL-LSFAIDLIAMVLAMPRALFP 265
                 66666....9999999*********997.33333344446666555555 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 1.2e-10
       MFS_1   7 lsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpa 105
                 l+a+  ++  +++p++  e +g  ++++g+l+++ a+g++++ l  G+++  +     l++++++++l+++++ +a +lwl++ l +++G++  +++ +
  KIR64816.1 252 LIAMVLAMPRALFPEIAEERFG-GGAAVGWLFSAIAIGSMLGGLTSGWIGRLHRQGVALVCAVVGWGLAIAAAGLARQLWLVVGLLAVAGAADLVSAVL 349
                 5566667777789988888899.9*****************************7777************444447799********************* PP

       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                  ++++   +p++ rgr  g+ ++ ++ G+ lg l +g +a+ +g  ++++  ++++++++vl ++++p+  + 
  KIR64816.1 350 RQTMLLVHAPDRMRGRLQGVNTVVVAGGPRLGDLRAGTMAAGFGTGVAWVGGGLAAAVLAVLLVAVFPALVRY 422
                 ****************************************9***77777777777777777666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3377.78
//
Query:       KIR64817.1  [L=310]
Description: aldose epimerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-45  154.2   0.0    5.2e-45  154.0   0.0    1.0  1  Aldose_epim  Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.0   0.0   2.9e-49   5.2e-45       3     300 ..      14     305 ..      12     306 .. 0.88

  Alignments for each domain:
  == domain 1  score: 154.0 bits;  conditional E-value: 2.9e-49
                  EEEEETTEEEEEECTCTTEEEEEEETT.STEESB-B-STHHHHHHSCCSSCEECSS-SEEETTEEEETTEEEECCCCBT.TTCEETBSGGGSB-EEEE CS
  Aldose_epim   3 itlkngaglsakislyGAtllslkvpdkeqrevllgsddaeeylkdsyfgatlgrvanRianGeFeldGkpyqlpqnee.gknplHGgargreWevee 99 
                  +t++  ag +a+++++G+ l  ++ ++    +++ g+   +e      +g++l +++nRi++G++ + G+++ql+  e+   ++lHG++++++W+++e
   KIR64817.1  14 WTISA-AGHEAVLVEVGGGLRTYRHDG---VDYVDGFAA-DELCPG-GAGQVLAPWPNRIRDGQYAFGGREFQLTLTEPsRGAALHGLVNWVPWHLVE 105
                  67777.589*****************9...9*******7.444444.48************************************************* PP

                  EEETTEEEEEEEEEEETCHCSTSEEEEEEEEEEETTEEEEEEEEEEESS.S-EEEEEEEEEEEETSSCTCTGGEEEEEEEEEEEECTTSGEEEEEEEC CS
  Aldose_epim 100 vkeddgvtvslvlkpdgeegypgdlevrvtytLnednelkieyeatndg.kptpfnltnHtYFnlsgesidshelqieadeylevdeeliptgelkdv 196
                  ++ dd vt+ + l  + ++gyp++l++r +y+++ d+ l+i++eatn + +p+pf+++ H+Y+ l+g  +d+  l++ a+  ++vd +l+p+g  ++v
   KIR64817.1 106 QS-DDAVTLGYDL--PAQPGYPWALRLRNRYSVGPDG-LRIDHEATNVSgEPCPFGFSMHPYLQLPGVAVDDLALRVPAKLRVQVDGRLLPVG-ATPV 198
                  *9.4666666666..5579******************.****************************99***********************99.89** PP

                  TTCCCCCCSSEEHCSSETEEEEEEEESSC.....SEEEEEETTTTEEEEEEEETTSSEEEEEECTTTTSEECCEEESSECTCETCCCECHHHT-EEEH CS
  Aldose_epim 197 kgtpfdfrqpkaigedlkglDhayllksk.....lkaviidpdkksgiklevsttepalvvytgnflkkylsreglaletqmlpdepnhpefpsivlk 289
                   gt++d ++p+ ig  +  lD a+    +           +pd++  +++ ++ +  +++v+tg+ l + ++r ++a+e++ +p ++ +++++ i+l+
   KIR64817.1 199 AGTEYDYTSPRRIGHAV--LDTAFGDVVRdadggSSVTLAAPDDAAAVTVWADREFGWWQVFTGDTLTGERHRRSVAIEPMTCPPDAYRSGKDVITLE 294
                  ****************7..666554444344434666666677777777777777779999999999999**************************** PP

                  TTTEEEEEEEE CS
  Aldose_epim 290 pGesysaetsy 300
                  pG +++ ++ +
   KIR64817.1 295 PGDTWRGTMGI 305
                  ******99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2166.90
//
Query:       KIR64818.1  [L=200]
Description: nitroreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-26   92.4   0.1    3.1e-25   89.2   0.1    2.1  1  Nitroreductase  Nitroreductase family
      4e-05   23.3   0.0      0.055   13.0   0.0    2.5  3  TM1586_NiRdase  Putative TM nitroreductase


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.1   3.5e-29   3.1e-25       1     170 []       7     173 ..       7     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 3.5e-29
                     HHH--B---B-S--.--HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEEE CS
  Nitroreductase   1 irkRrSiRkFddep.vpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvli 94 
                     +r+Rr +R++d+++ vp+e+++++l+ a raPsag +q w f+v+++        +a +e +++a+ ++   +        ++  + +++ap+++
      KIR64818.1   7 LRRRRMVRNYDPDRpVPPEVVQRLLDHAVRAPSAGFAQGWGFLVLEE--------PADRERFWAATTPDGGGR--------ERWLAGMRRAPLIV 85 
                     589***********9******************************74........555555555555555444........34567888888888 PP

                     EE..........---TTS---HHHHHHHHHH..HHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEEE- CS
  Nitroreductase  95 vi..........vatldkserkaaerayrya..lldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliavGy 170
                     v            a++dk ++++a +++++   ++d+g aa  +lL+A ++Glg+c+ g + ++ +  r+ +g+p e+++v++++vGy
      KIR64818.1  86 VPhanrsayldrYAEPDKGWTDRAQERWPVPywYVDTGFAALLMLLTAVDEGLGACFFGIPPQRTQAYREAFGVPAEYDPVGALTVGY 173
                     88888888888877888888888888876552279***************************99999********99**********9 PP

>> TM1586_NiRdase  Putative TM nitroreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1   0.00036       3.2       3      32 ..       4      34 ..       2      40 .. 0.86
   2 !    4.1   0.0    0.0032        29     157     183 ..      24      50 ..      19      55 .. 0.87
   3 !   13.0   0.0   6.2e-06     0.055      82     149 ..     120     194 ..     116     198 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00036
                    HHHHHH--B---B-.-S---HHHHHHHHH-- CS
  TM1586_NiRdase  3 yeaiekRhsvRkYk.dealeeelleelkeai 32
                     e ++ R++vR+Y+ d+++++e++++l + +
      KIR64818.1  4 AEVLRRRRMVRNYDpDRPVPPEVVQRLLDHA 34
                    688999*******999*********998765 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0032
                     -HHHHHHHHHHHTS--GGG----EEE. CS
  TM1586_NiRdase 157 pewfkeileaarlAPsAlNqqpwrfel 183
                     pe ++++l+ a  APsA   q w f +
      KIR64818.1  24 PEVVQRLLDHAVRAPSAGFAQGWGFLV 50 
                     788999*****************9965 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 6.2e-06
                     HHHHHHHHHHHHHHHHTT-EEEEES--SST..............T-S-EEEEE-BS----.....-----HHHHB CS
  TM1586_NiRdase  82 ekaGYygeqlvLkltalGlgtcWvggtykk...kkakvelkkgeklvivIalGyaktklv....eakrkpleelc 149
                     + +G+    ++L ++ +Glg c+ g+  ++    ++++ ++ + + v ++++Gy + +       + r+p++e++
      KIR64818.1 120 VDTGFAALLMLLTAVDEGLGACFFGIPPQRtqaYREAFGVPAEYDPVGALTVGYRAPDHRspslRRGRRPVDEVV 194
                     56899999******************9888554456688999999999999999887773344477777877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1500.17
//
Query:       KIR64819.1  [L=101]
Description: hypothetical protein TK50_04275 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 794.56
//
Query:       KIR64820.1  [L=386]
Description: acyl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-32  113.3   1.0    1.7e-32  112.7   1.0    1.3  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    5.1e-30  104.4   0.8    1.4e-29  103.0   0.2    2.1  3  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    2.5e-26   91.7   0.0    1.5e-25   89.2   0.0    2.1  2  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    2.8e-10   40.6   0.1    4.9e-10   39.8   0.1    1.4  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
  ------ inclusion threshold ------
       0.17   11.6   0.0       0.25   11.0   0.0    1.2  1  HpaB_N         4-hydroxyphenylacetate 3-hydroxylase N termina


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   1.0   4.8e-36   1.7e-32       2     149 ..     232     379 ..     231     380 .. 0.98

  Alignments for each domain:
  == domain 1  score: 112.7 bits;  conditional E-value: 4.8e-36
                    BHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH CS
  Acyl-CoA_dh_1   2 kGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpdraeasmaKlfase 97 
                     G+++ ++ l+  R +++++alg+ar +le++l+ya +r++fg+pl+ +ql + kla+ma+e++   ll++++ +++dag+ ++ ++s+ Kl   +
     KIR64820.1 232 AGLKAPLSCLTEARHGIVWGALGAARDCLETTLAYAGTRTQFGRPLAGFQLTQAKLADMAVEWQKGFLLALHLGRLADAGRLRPEQVSVGKLNNVR 327
                    6999999***************************************************************************************** PP

                    HHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHHH CS
  Acyl-CoA_dh_1  98 laqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarrl 149
                     a  +a+++  +lG++G++ eyp+ r++++  +   +eGtsei+ ++i++rl
     KIR64820.1 328 EALAIARQCRTILGANGVSGEYPIMRHANNLESVLTYEGTSEIHQLVIGQRL 379
                    *************************************************997 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.2   3.9e-33   1.4e-29       2     113 .]      15     126 ..      14     126 .. 0.98
   2 ?   -3.4   0.0       4.1   1.5e+04      73     101 ..     245     272 ..     240     277 .. 0.59
   3 ?   -2.1   0.0       1.7     6e+03      71      97 ..     335     355 ..     283     357 .. 0.58

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 3.9e-33
                    HHHHHHHHHHHHHHHHHTHHHHHHHHHHTSGH.HHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHH CS
  Acyl-CoA_dh_N   2 eeqealrdtvrefaeeelaphaaewdeegefp.relwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailrf 96 
                    +e++++r  vr++++++++ph+a+w+e+g++p rel +++++lGllg+++ + yg+ag +++++ +++ el+++d+g+++l++v+ sl+++ai r+
     KIR64820.1  15 DEERQIRSVVRRLVDDRVRPHVADWYERGQVPaRELAREFGRLGLLGMHL-TGYGCAGSTAVAYGLACLELEAGDSGVRSLVSVQGSLAMYAIWRY 109
                    89******************************8999**************.9******************************************** PP

                    S-HHHHHHHHHHHHTTS CS
  Acyl-CoA_dh_N  97 GteeqkrryLpklasge 113
                    G+eeqk+r+Lp +a+ge
     KIR64820.1 110 GSEEQKQRWLPAMATGE 126
                    ***************98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.1
                    HH-HHHHHHHHHHHHTTHHHHHHHS-HHH CS
  Acyl-CoA_dh_N  73 radaglalllgvhsslvapailrfGteeq 101
                    r+++++++l ++ +     +++  Gt  q
     KIR64820.1 245 RHGIVWGALGAARD-CLETTLAYAGTRTQ 272
                    55555544344444.44457888888776 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.7
                    HHHH-HHHHHHHHHHHHTTHHHHHHHS CS
  Acyl-CoA_dh_N  71 laradaglalllgvhsslvapailrfG 97 
                            +++lg++   + ++i+r++
     KIR64820.1 335 QC------RTILGANGVSGEYPIMRHA 355
                    22......2344454444456777766 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   4.3e-29   1.5e-25       1      97 []     130     220 ..     130     220 .. 0.97
   2 ?   -0.3   0.0      0.35   1.3e+03       2      37 ..     266     299 ..     265     308 .. 0.84

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 4.3e-29
                    EEE---SS-SS-GGG---EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE. CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvkttaaerdggeyvlnGeKiwitnaaiatlalvlartekpdrarglslflvprdapgvsvrrieeklGlrglptgelvfed 96 
                    +f+lTEp++Gsd as++t  a+rdg+++ l+G K+witna+ a++a+++ar     +++g++ f+vp d+pgvsvr+i++k+ lr   tge+ ++d
     KIR64820.1 130 CFGLTEPDHGSDPASMAT-RARRDGDDWLLHGGKMWITNAPVADVAVIWAR-----AEEGVRGFAVPLDTPGVSVREIRRKMSLRASLTGEIALDD 219
                    9*****************.88999999************************.....589***********************************99 PP

                    . CS
  Acyl-CoA_dh_M  97 v 97 
                    v
     KIR64820.1 220 V 220
                    7 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.35
                    EE---SS-SS-GGG---EEEEETT.EEEEEEEEEEE CS
  Acyl-CoA_dh_M   2 falTEpqaGsdvasvkttaaerdggeyvlnGeKiwi 37 
                    +a T  q G  +a+++ t a+ ++  ++++++K + 
     KIR64820.1 266 YAGTRTQFGRPLAGFQLTQAKLAD--MAVEWQKGFL 299
                    67777888999999**97799999..9*****9885 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.1   1.4e-13   4.9e-10       6     133 ..     251     368 ..     246     369 .. 0.87

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 1.4e-13
                    HHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   6 valGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaavdal 101
                     alGaAr +l+ ++++a++r++  +g++la ++ tq++la++a +++   +l ++  +     a+ag+   +e+    ++ ++  v++a a+++++
     KIR64820.1 251 GALGAARDCLETTLAYAGTRTQ--FGRPLAGFQLTQAKLADMAVEWQKGFLLALHLGRL----ADAGRL-RPEQ---VSVGKLNNVREALAIARQC 336
                    69********************..**************************999999999....555555.3444...4677777899********* PP

                    HHHCGGGGGBTT-HHHHHHHHHHHHCTSGGG- CS
  Acyl-CoA_dh_2 102 feaaGgsalrkesplqRlwRDahaaaaHaaln 133
                      + G++++  e+p+ R+  +++ + ++++++
     KIR64820.1 337 RTILGANGVSGEYPIMRHANNLESVLTYEGTS 368
                    *****************998888887777765 PP

>> HpaB_N  4-hydroxyphenylacetate 3-hydroxylase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     7e-05      0.25     180     228 ..     157     198 ..     134     218 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7e-05
                 EEEEEEEEEE-.--SSEEEE---SS-..TTSGGG-EEEEEETT-TTEEE CS
      HpaB_N 180 vVrGakvlaTgaaladeilvlptramlkeedkdyavafavpvdapGlkl 228
                   +G k+ +T+a++ad  ++           ++    favp+d+pG+++
  KIR64820.1 157 LLHGGKMWITNAPVADVAVIWAR-------AEEGVRGFAVPLDTPGVSV 198
                 568*************9999877.......34567899********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2839.84
//
Query:       KIR64821.1  [L=128]
Description: MarR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-25   87.1   0.0    6.5e-25   86.8   0.0    1.1  1  HxlR           HxlR-like helix-turn-helix
    0.00091   19.2   0.2     0.0018   18.3   0.1    1.6  1  HTH_20         Helix-turn-helix domain
     0.0018   18.2   0.0     0.0026   17.7   0.0    1.3  1  PadR           Transcriptional regulator PadR-like family
     0.0029   17.8   0.0     0.0046   17.1   0.0    1.3  1  HTH_34         Winged helix DNA-binding domain
  ------ inclusion threshold ------
      0.011   15.6   0.1      0.029   14.2   0.0    1.9  2  HTH_5          Bacterial regulatory protein, arsR family
      0.015   15.2   0.9      0.085   12.8   0.4    2.2  2  MarR_2         MarR family
      0.029   14.3   0.2      0.058   13.3   0.2    1.4  1  MarR           MarR family
      0.086   12.6   0.3       0.18   11.6   0.3    1.7  1  LexA_DNA_bind  LexA DNA binding domain
       0.12   12.2   0.1         19    5.0   0.0    2.4  3  RecO_C         Recombination protein O C terminal


Domain annotation for each model (and alignments):
>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   3.3e-28   6.5e-25       4      88 ..      27     111 ..      24     114 .. 0.96

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 3.3e-28
                 STTHHHHHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHHHHHHHHHH CS
        HxlR   4 gkWkllilvellkgkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelkkwgeeyle 88 
                 +kW+l +l +l + + Rf+el++a+p +sqk L+++Lr+Le++g++er+v+++ P+ veY++t+ G++l+  +++l +w++++l 
  KIR64821.1  27 DKWSLEVLNTLCERPSRFNELRQAIPAVSQKSLSATLRRLERNGIVERRVLSSRPVAVEYRITPLGKTLRSPVDALFDWADHHLG 111
                 8*******************************************************************************99875 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   8.9e-07    0.0018      12      57 ..      30      75 ..      12      78 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.9e-07
                HHHHHHHHSTCTTB-HHHHHHHH.TS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 12 RrrilraLaraegltaselaerl.dlskntlsyHLrvLeeagLvevv 57
                 +++l  L  +++  ++el +++  +s+++ls  Lr Le+ g+ve++
  KIR64821.1 30 SLEVLNTL-CERPSRFNELRQAIpAVSQKSLSATLRRLERNGIVERR 75
                56677777.8888889999999977********************97 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.3e-06    0.0026      20      71 ..      45      94 ..      33      97 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.3e-06
                HCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCH CS
        PadR 20 eelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrr 71
                +el + + ++s+ sl  +L+rLe++g+ve++   s  +p    Yr+T+ G++
  KIR64821.1 45 NELRQAIPAVSQKSLSATLRRLERNGIVERRVLSS--RPVAVEYRITPLGKT 94
                455555667788889999*************9975..999**********96 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.3e-06    0.0046       4      67 ..      32      94 ..      30     101 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.3e-06
      HTH_34  4 avlsyLasvdeadfvelkealea.tdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGre 67
                +vl +L  ++   f+el++a+ a ++  Ls+ l+ Le +g +e++  ++++     +riTp G++
  KIR64821.1 32 EVLNTLC-ERPSRFNELRQAIPAvSQKSLSATLRRLERNGIVERR-VLSSRPVAVEYRITPLGKT 94
                4555554.45678********6538899************88876.5777768899*******86 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.5e-05     0.029       5      46 ..      31      73 ..      27      74 .. 0.92
   2 ?   -3.2   0.0         4   7.9e+03      33      39 ..     107     113 ..     107     116 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.5e-05
                HHHHHHHTTSSEEHHHHHHHH.TS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  5 lkILklLaegelcvcelaeel.glsqstvShHLkkLreaGLVe 46
                l++L+ L+e++  + el  ++  +sq  +S  L++L+  G+Ve
  KIR64821.1 31 LEVLNTLCERPSRFNELRQAIpAVSQKSLSATLRRLERNGIVE 73
                799**************9887579******************7 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4
                 HHHHHHH CS
       HTH_5  33 ShHLkkL 39 
                 +hHL + 
  KIR64821.1 107 DHHLGAI 113
                 5999665 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.41   8.1e+02       1      14 [.      12      25 ..      12      28 .. 0.82
   2 ?   12.8   0.4   4.3e-05     0.085      10      54 ..      33      75 ..      30      80 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.41
                TT--HHHHHHHHHH CS
      MarR_2  1 lgltpaqarvLaaL 14
                l++tpa++ +L  +
  KIR64821.1 12 LDVTPAHRELLDQV 25
                589*******9876 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.3e-05
                HHHHHHCTTTSEEEHHHHHH.HHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2 10 vLaaLgrrpgrdltvgelar.rlglsksavsrilkrLvaaGLverr 54
                vL+ L  rp    + +el +    +s+ ++s +l+rL++ G verr
  KIR64821.1 33 VLNTLCERPS---RFNELRQaIPAVSQKSLSATLRRLERNGIVERR 75
                7777777775...7888887344799*******************8 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   2.9e-05     0.058      29      50 ..      54      75 ..      53      78 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.9e-05
                S-HHHHHHHHHHHHHTTSEEEE CS
        MarR 29 vskstvtrvldrLekkGlieRs 50
                vs+ +++ +l+rLe++G +eR+
  KIR64821.1 54 VSQKSLSATLRRLERNGIVERR 75
                68899****************7 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   9.1e-05      0.18      29      64 ..      45      80 ..      13      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.1e-05
                   HHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GGG-CC CS
  LexA_DNA_bind 29 reiaralglkSpsaveehLkaLerKGyierdpgkpR 64
                    e+ +a+   S ++    L++Ler G++er    +R
     KIR64821.1 45 NELRQAIPAVSQKSLSATLRRLERNGIVERRVLSSR 80
                   6899999999*******************9876666 PP

>> RecO_C  Recombination protein O C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.011        22     118     144 ..       3      29 ..       1      37 [. 0.84
   2 ?   -3.5   0.0       4.1   8.1e+03      34      43 ..      59      68 ..      56      74 .. 0.69
   3 ?    5.0   0.0    0.0098        19      24      47 ..      96     119 ..      94     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.011
                 TS-HHHHHHS---GGGHHHHHHHHHHH CS
      RecO_C 118 rgdleklgelkvspeelrellrllray 144
                 ++d  ++++l+v+p++++ l ++l+ +
  KIR64821.1   3 DTDPGTAERLDVTPAHRELLDQVLDKW 29 
                 556677999****************98 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.1
                HHHHHHHHHH CS
      RecO_C 34 llatLdaLde 43
                l atL++L++
  KIR64821.1 59 LSATLRRLER 68
                6677777764 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0098
                 SS--HHHHHHHHHHHHHHHHSS-H CS
      RecO_C  24 eepnpeLFdlllatLdaLdeasda 47 
                 + p ++LFd+  ++L a+++a +a
  KIR64821.1  96 RSPVDALFDWADHHLGAIETARRA 119
                 57999*************988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 940.60
//
Query:       KIR64822.1  [L=136]
Description: endoribonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-17   61.6   0.0    8.6e-17   61.3   0.0    1.1  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   4.8e-21   8.6e-17      10     120 ..      16     134 ..      11     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 4.8e-21
                    S-BS.EEEET.TEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGG.....G.HHHHHHHHHHHSSSSTS-- CS
  Ribonuc_L-PSP  10 pYsq.avkag.nlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladie.....d.faevnevyaeafdelkeaP 97 
                    pY + av +g + v+v+Gq+  d++   +++gd++ q++qal+n    La agas+sdvV++t+++++++     d +a v++v++e+   +   P
     KIR64822.1  16 PYHHvAVASGsRHVHVAGQISRDEAGRPVASGDLRGQVAQALRNTAHGLAGAGASFSDVVRLTFYVTNWAperigDfMAGVDDVAGELGLPQ-PLP 110
                    7888888865278**********7555555**************************************872222233455666666655444.79* PP

                    EEEEEE-SBSG.GG-SEEEEEEEE CS
  Ribonuc_L-PSP  98 arsaveVaaLp.kgakvEIeaiav 120
                      s+++V  L  ++++vE+ea+a+
     KIR64822.1 111 PASLIGVDYLFePDVEVEVEATAI 134
                    **********99**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       199  (0.0110993); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1155.93
//
Query:       KIR64823.1  [L=174]
Description: transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-10   40.3   3.9    1.1e-09   37.6   1.9    2.7  2  Hexapep    Bacterial transferase hexapeptide (six repeats)
    1.2e-07   31.3   1.5    6.2e-07   29.1   1.3    2.0  2  Hexapep_2  Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.028   2.5e+02       3      21 ..      73      87 ..      71     101 .. 0.53
   2 !   37.6   1.9   1.3e-13   1.1e-09       5      35 ..     124     154 ..     121     155 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.028
                EEETTEEE-TTEEEETTEE CS
     Hexapep  3 vIGsnvlIgpfaviggnVk 21
                +I +n++   +a i     
  KIR64823.1 73 FINQNCTFLDYAGI----R 87
                66666666665554....3 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 1.3e-13
                 ETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   5 GsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                  +nv+Ig++a+i+++V IG++++I+ag+v++
  KIR64823.1 124 ADNVWIGAGATILPGVSIGRDAVIAAGAVVA 154
                 59***************************96 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.094   8.4e+02       8      27 ..      72      95 ..      70      99 .. 0.64
   2 !   29.1   1.3     7e-11   6.2e-07       6      32 ..     125     153 ..     120     154 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.094
                -EE-TT-E.E...SEEE-TT-EE- CS
   Hexapep_2  8 CliGanag.i...GvslGdncvvg 27
                ++i  n++     G+ l +++ vg
  KIR64823.1 72 VFINQNCTfLdyaGIRLAERVMVG 95
                566667774244588887777776 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 7e-11
                 TT-EE-TT-EE..SEEE-TT-EE-TT-EE CS
   Hexapep_2   6 dnCliGanagi..GvslGdncvvgaGvvi 32 
                 dn+ iGa a+i  Gvs+G+++v++aG v+
  KIR64823.1 125 DNVWIGAGATIlpGVSIGRDAVIAAGAVV 153
                 9*************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       209  (0.0116571); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1447.56
//
Query:       KIR64824.1  [L=228]
Description: hypothetical protein TK50_04300 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-38  130.0   0.1    9.4e-38  129.7   0.1    1.1  1  DUF4230   Protein of unknown function (DUF4230)
  ------ inclusion threshold ------
       0.22   11.8   4.0       0.17   12.2   3.0    1.6  1  RskA      Anti-sigma-K factor rskA
       0.26   11.6   2.6       0.36   11.2   0.4    2.3  2  Big_3     Bacterial Ig-like domain (group 3)


Domain annotation for each model (and alignments):
>> DUF4230  Protein of unknown function (DUF4230)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.7   0.1   1.6e-41   9.4e-38       2     145 .]      67     223 ..      66     223 .. 0.97

  Alignments for each domain:
  == domain 1  score: 129.7 bits;  conditional E-value: 1.6e-41
     DUF4230   2 kiqeiseLetaeytvdkvvtiedek....lllkekklliiargtvkagvDLsklkeediqvsdd...ititLPppeilsvkldekrikvydekrgllnr 93 
                 +iq++s++++ae+++++vv++++++     +l ++++l++  g v+a+vD++k+ e  + vs+d   ++++LP+p++ +++ld+++++v+ e+rgllnr
  KIR64824.1  67 SIQDLSRYVAAEGNFQVVVDLQNDRdnvpEFLLNQRTLFVGAGSVEAYVDFTKIGEGAVVVSPDgksVEVKLPAPQLGQTNLDMEKSYVVAEQRGLLNR 165
                 8************************87777777****************************************************************** PP

     DUF4230  94 itde......deeellkeaeakikeeaeenglleqAeenakklleqllkslgyeevev 145
                 i+d        +++++k+ae++i ++a+++gl ++A+en+ k+l +ll+slgye+v+v
  KIR64824.1 166 INDLvkgdpnRQQQVYKLAEDRITAAARDSGLTDRAQENTDKMLAGLLRSLGYEKVTV 223
                 ********************************************************97 PP

>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.0   2.8e-05      0.17      28      97 ..       9      77 ..       2     183 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.8e-05
                ...................XXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXX.............XXXX.XXXXXXX CS
        RskA 28 aapppaaapaararr....laaaaAaalllvlgqlavasaaldplrqsaaqaeavvavlaap.............daagatatvvds 97
                +++p+ +  +a   r    +++aaA+a++++lg     ++a +  ++ +++ ++     ++p             +          +
  KIR64824.1  9 RPAPKGPSGPA---RgllvVLGAAAVAVVVLLG-----AQATNVFPDFRNPFAKEQTDRSQPpllksiqdlsryvA----------A 77
                23333333333...2455788888888888899.....33333333333332333333333335533332233322..........2 PP

>> Big_3  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4     6e-05      0.36      37      64 ..     109     136 ..      75     139 .. 0.72
   2 ?   -0.7   0.1       0.3   1.8e+03      49      57 ..     217     225 ..     213     227 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6e-05
       Big_3  37 vevsgsvdstkaGeytvtvtykgvsatf 64 
                  +v+ +vd+tk Ge +v v+ +g+s+ +
  KIR64824.1 109 GSVEAYVDFTKIGEGAVVVSPDGKSVEV 136
                 456669*****************77654 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.3
       Big_3  49 Geytvtvty 57 
                 G  +vtvty
  KIR64824.1 217 GYEKVTVTY 225
                 778899998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1760.97
//
Query:       KIR64825.1  [L=69]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-19   67.4   0.6    7.8e-19   67.2   0.6    1.0  1  PspC      PspC domain


Domain annotation for each model (and alignments):
>> PspC  PspC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.6   4.3e-23   7.8e-19       1      52 [.       3      59 ..       3      60 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.2 bits;  conditional E-value: 4.3e-23
        PspC  1 krLyRspdnkvlgGVcaGlAeyfgvdptlvRlifvlll.....glllYiilwiilPe 52
                ++L+R +++++l+GVc GlA++f+ +++lvRl+f+l l      +++Y++lw+++P+
  KIR64825.1  3 RKLVRPREGRMLAGVCVGLARRFNTSANLVRLLFLLSLllpgtQVIVYLVLWVLMPN 59
                79*******************************99999899999999*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 477.60
//
Query:       KIR64826.1  [L=456]
Description: serine ammonia-lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.7e-102  341.4   7.0   4.8e-102  341.1   7.0    1.1  1  SDH_alpha  Serine dehydratase alpha chain
    2.7e-59  200.0   0.0    7.6e-59  198.5   0.0    1.7  2  SDH_beta   Serine dehydratase beta chain


Domain annotation for each model (and alignments):
>> SDH_alpha  Serine dehydratase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.1   7.0  5.3e-106  4.8e-102       2     260 .]     187     450 ..     186     450 .. 0.95

  Alignments for each domain:
  == domain 1  score: 341.1 bits;  conditional E-value: 5.3e-106
   SDH_alpha   2 kgleilelvteneeeaakrlsaeeidakleeiwevmdeaieeglsnkaiaeegllpgelkvkr.ayaalgkrl............ldklsaaAlavaem 87 
                 +gl+i+e++++ne  a  r ++ e++a+l +iw+vm+e++e+g++     ++g+lpg+lkv+r a a+l++ l            +d+++++Alav+e+
  KIR64826.1 187 NGLSISEVMLANE-LAR-R-TEGEVRAGLLDIWRVMRECVENGCA-----RDGVLPGGLKVRRrA-AELRRGLeadaasadplrvMDWVTLFALAVNEE 276
                 589********99.444.7.69*********************97.....6***********978.9******88888888777779************ PP

   SDH_alpha  88 naaggrvvtaptsGaaGilPavlvalleelkas......eellraLllaaligilikrnasisgAecGcqaevGvacamAAaglaallggspeqienAa 180
                 naaggrvvtapt+GaaGi+Pavl+++++    +        ++r+Ll+a++ig+l+k+nasisgAe+Gcq+evG+ac+mAAagla+ lgg+peq+enAa
  KIR64826.1 277 NAAGGRVVTAPTNGAAGIIPAVLHYYTR----FvpgadeAGVVRFLLAAGAIGVLFKENASISGAEVGCQGEVGSACSMAAAGLAEALGGTPEQVENAA 371
                 *************************999....455679999********************************************************** PP

   SDH_alpha 181 eialehllGltCDpvaGlvkipCiernalgavkAvtaarlalagdggegivsldevietmrntgkdmsekyketseggLa 260
                 ei++eh+lGltCDpv+Glv+ipCierna++ +kA+taarlal+gdg  + vsld+vi+tmr+tg+dm+ kyket++ggLa
  KIR64826.1 372 EIGMEHNLGLTCDPVGGLVQIPCIERNAVASIKAITAARLALRGDG-VHHVSLDKVIKTMRETGADMKVKYKETARGGLA 450
                 ********************************************99.*******************************97 PP

>> SDH_beta  Serine dehydratase beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.5   0.0   8.4e-63   7.6e-59       1     153 [.       3     155 ..       3     157 .. 0.99
   2 ?   -2.1   0.0      0.49   4.4e+03      62      97 ..     407     442 ..     401     450 .. 0.80

  Alignments for each domain:
  == domain 1  score: 198.5 bits;  conditional E-value: 8.4e-63
                 XXXXXXXXXXXXX-TTTHHHHHHHHHHHHHHHHTT-TTT--EEEEEEEHHHHHS-TTSSHHHHHHHHHTT--TTTS-GGGHHHHHHHHHHHTEEEETTT CS
    SDH_beta   1 SvfdlfkiGiGPSSShTvgpmraaaaFveelkekelleevarirveLyGsLaatgkghgtdeAvllGLegeepetvdpdavesrleeieeekklklage 99 
                 Svfdlf++GiGPSSShTvgpmraa++Fv+ lk+++ll++v r+r+eL+GsL+atg+ghg+  AvllGLege+petvd+d+v+ r+++i++ ++l+l g 
  KIR64826.1   3 SVFDLFSVGIGPSSSHTVGPMRAARTFVAGLKADGLLADVVRVRAELFGSLGATGHGHGSGPAVLLGLEGEAPETVDTDTVAPRVAAIRAGRRLTLLGA 101
                 9************************************************************************************************** PP

                 EEEE--HHHHEEEETT---SS-SSEEEEEEE-TTS-EEEEEEEEEETTTEEEET CS
    SDH_beta 100 keiefdeeedivlekkkslplhsnglelsaldeegellleetyySiGGGfivee 153
                 +e++fd+++d+vl++++slp+h+ng++++a+d+ g+ll e+tyyS+GGGf+v+e
  KIR64826.1 102 QEVDFDPDRDLVLHRRRSLPYHPNGMTFAAYDGGGALLRERTYYSVGGGFVVDE 155
                 ****************************************************98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.49
                 HHHHHHHTT--TTTS-GGGHHHHHHHHHHHTEEEET CS
    SDH_beta  62 eAvllGLegeepetvdpdavesrleeieeekklkla 97 
                 +A  l L g   ++v+ d+v ++++e+ ++ k+k +
  KIR64826.1 407 TAARLALRGDGVHHVSLDKVIKTMRETGADMKVKYK 442
                 567778999999999999999999998888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3499.07
//
Query:       KIR64827.1  [L=260]
Description: sugar ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-18   67.4   0.0    8.1e-18   65.3   0.0    1.9  1  ABC_tran      ABC transporter
    1.1e-05   25.0   0.0      0.025   14.0   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
    1.8e-05   24.7   0.4      0.001   19.0   0.2    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0013   18.5   0.0     0.0023   17.6   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
     0.0064   16.9   0.0      0.011   16.1   0.0    1.4  1  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.013   16.0   0.0      0.084   13.3   0.0    2.0  1  AAA           ATPase family associated with various cellular 
      0.023   15.2   0.0      0.033   14.7   0.0    1.2  1  AAA_23        AAA domain
        0.1   12.5   0.1          3    7.7   0.1    2.2  2  NTPase_1      NTPase
       0.12   12.1   0.0       0.29   10.8   0.0    1.6  1  AAA_30        AAA domain
       0.12   12.5   0.1       0.22   11.6   0.1    1.4  1  MMR_HSR1      50S ribosome-binding GTPase
       0.23   11.3   0.0        0.5   10.2   0.0    1.5  1  SCP1201-deam  SCP1.201-like deaminase
       0.29   11.0   1.0       0.95    9.3   0.1    2.2  2  GAGA          GAGA factor
        0.3   10.7   0.0       0.41   10.3   0.0    1.1  1  AAA_15        AAA ATPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   5.9e-21   8.1e-18       1     137 []      57     192 ..      57     192 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 5.9e-21
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH.............HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.............xxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren.............esdeei 85 
                 l++vs+ + +ge++++vG+nG+GKStLl+l+ag l p+eG+i             ++r  ++ l +  + + ++lt ren             + ++++
  KIR64827.1  57 LRDVSFRVAPGETLGVVGRNGTGKSTLLRLIAGVLIPDEGSI-------------RVRGDVAPLLELsAGFSNDLTGRENlylvgglhglssrYLRKHF 142
                 689***************************************.............66666666666658888889999999999999998888888889 PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++++s  g +   ++ +++  +++S G+k+r+  a +     ++ll+DE ta
  KIR64827.1 143 HEIVSFAGEQV--ERAIDTAVRHYSSGMKVRLGFAIISHLPHPILLMDEVTA 192
                 99999999777..89999999****************************996 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00066      0.92      28      48 ..      71      91 ..      58     104 .. 0.79
   2 !   14.0   0.0   1.8e-05     0.025     147     200 ..     170     224 ..     166     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00066
                EEEESTTSSHHHHHHHHHHHC CS
                xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 28 aivGpNGSGKsnlldAilFvL 48
                 +vG+NG GKs ll  i  vL
  KIR64827.1 71 GVVGRNGTGKSTLLRLIAGVL 91
                69**********998776555 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
       SMC_N 147 laLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislree 200
                 + L fAi +  p+p+ l+De+ a  D++ ++k    +++   +   ++ +s++e+
  KIR64827.1 170 VRLGFAIISHLPHPILLMDEVTAVGDAEFREKCYATIERLLREgRTLVLVSHNEK 224
                 6789****************************99999987666244555677765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2   7.4e-07     0.001       3      30 ..      71      92 ..      70     121 .. 0.76
   2 ?    4.1   0.0     0.024        33     227     267 ..     154     191 ..     111     222 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7.4e-07
      AAA_21  3 vliGpNgsGKSnLLdaldllarldrdve 30
                +++G+Ng+GKS+LL+++ ++      ++
  KIR64827.1 71 GVVGRNGTGKSTLLRLIAGV------LI 92
                58***************766......33 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.024
      AAA_21 227 gdgqelparelSdGtkrllalltallralkkgsllliDEpE 267
                 ++  ++ +r+ S+G+k  l+++ + +  +   ++ll DE+ 
  KIR64827.1 154 ERAIDTAVRHYSSGMKVRLGFAIISHLPH---PILLMDEVT 191
                 5566778999******9988888888777...9******85 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.7e-06    0.0023      16      50 ..      61      95 ..      55     100 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.7e-06
      AAA_29 16 tieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                ++++ + ++  ++G++G+GKSTll  i+ +L+p++
  KIR64827.1 61 SFRVAPGETLGVVGRNGTGKSTLLRLIAGVLIPDE 95
                566776777779************99999999986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   8.1e-06     0.011      22     140 ..      67     219 ..      57     220 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.1e-06
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdg.giflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala............ 106
                 g  e + ++G  G+GKs+l+r ++  l  d+  i +rg+   l   +++sa + + l+ +e l  ++  +   + ++ r++++e ++            
  KIR64827.1  67 G--ETLGVVGRNGTGKSTLLRLIAGVLIPDEgSIRVRGDVAPL---LELSAgFSNDLTGRENLYLVGGLHGL-SSRYLRKHFHEIVSfageqveraidt 159
                 3..66789****************9888775244477777777...66666677766666655555555444.55555666666655555555555556 PP

      AAA_16 107 ..........................avpelagaeasrllellkrll.allsrderplvlv 140
                                             +e+++ +   ++e++ + + +ll++ +r+lvlv
  KIR64827.1 160 avrhyssgmkvrlgfaiishlphpilLMDEVTAVGDAEFREKCYATIeRLLRE-GRTLVLV 219
                 55677777777777887777766666555555555578888888888555555.7778876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.1e-05     0.084       3      74 ..      72     197 ..      70     228 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.1e-05
                 EESSTTSSHHHHHHHHHHHH...........T.HE.............EEEEETTTCSSS....................................... CS
         AAA   3 lyGppGtGKTllakavakel...........g.ve.............fleisgsellsk....................................... 37 
                 ++G  GtGK++l + +a  l           + ++                                                                
  KIR64827.1  72 VVGRNGTGKSTLLRLIAGVLipdegsirvrgDvAPllelsagfsndltG----------Renlylvgglhglssrylrkhfheivsfageqveraidta 160
                 689****************866665443333123333333333333440..........1444444444444444444445554445555555566776 PP

                 .STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH CS
         AAA  38 .yvgesekkirelfkeakekakpsilfiDEidalaksr 74 
                      s +k+r  f+ +++   + il++DE+ a++ ++
  KIR64827.1 161 vRHYSSGMKVRLGFAIISHLP-HPILLMDEVTAVGDAE 197
                 655566677777777776664.6999999999998777 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.4e-05     0.033      24      43 ..      72      91 ..      54     117 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-05
      AAA_23 24 ItGpNGaGKTTildAiklaL 43
                ++G NG+GK+T+l+ i  +L
  KIR64827.1 72 VVGRNGTGKSTLLRLIAGVL 91
                79*************99887 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0022         3       3      24 ..      71      92 ..      69     108 .. 0.79
   2 ?    2.5   0.0     0.086   1.2e+02      98     137 ..     184     225 ..     168     235 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0022
                EEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1  3 fiTGppGvGKtTlvkkvlellk 24
                 + G+ G+GK+Tl++ ++ +l 
  KIR64827.1 71 GVVGRNGTGKSTLLRLIAGVLI 92
                578**************99884 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.086
                 EEEE---...STTGGG-HHHHHHHHHHHTTTSEEEEE--SS-- CS
    NTPase_1  98 viviDEi...GkmElkskkfkeaveevLksekpvlavihrrkd 137
                 ++++DE+   G  E+  +k   ++e++L++++ ++ v h++kd
  KIR64827.1 184 ILLMDEVtavGDAEFR-EKCYATIERLLREGRTLVLVSHNEKD 225
                 5677775333666755.567789***************99975 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00021      0.29      21      43 ..      70      92 ..      62     118 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00021
      AAA_30 21 avltGpAGtGKttalkalreawe 43
                  ++G+ GtGK+t+l+ ++ ++ 
  KIR64827.1 70 LGVVGRNGTGKSTLLRLIAGVLI 92
                5689*************987765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00016      0.22       2      21 ..      70      89 ..      69     104 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00016
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                 ++vGr  +GKStL++ + g
  KIR64827.1 70 LGVVGRNGTGKSTLLRLIAG 89
                689************99876 PP

>> SCP1201-deam  SCP1.201-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00036       0.5     102     128 ..     200     226 ..     192     234 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00036
  SCP1201-deam 102 kgCdtlveaiLpeGstLtVwtpddegp 128
                    +C++++e +L+eG tL  ++ +++  
    KIR64827.1 200 EKCYATIERLLREGRTLVLVSHNEKDL 226
                   46*****************99999873 PP

>> GAGA  GAGA factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00069      0.95      34      53 ..      14      34 ..       2      35 .. 0.79
   2 ?   -0.8   0.1         1   1.4e+03      37      44 ..     135     142 ..     134     149 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00069
                ESSHHHHHHHHHHHTT.TS-- CS
        GAGA 34 iRqsRnLRRHLELRHF.kkPG 53
                iR  Rn RR L LR F  +PG
  KIR64827.1 14 IRFVRNRRRQLRLREFfIRPG 34
                999***********8625776 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1
                 HHHHHHHH CS
        GAGA  37 sRnLRRHL 44 
                 sR LR+H 
  KIR64827.1 135 SRYLRKHF 142
                 99*****6 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0003      0.41      28      43 ..      72      87 ..      57      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0003
      AAA_15 28 liGkNnsGKSsileal 43
                ++G+N++GKS++l+++
  KIR64827.1 72 VVGRNGTGKSTLLRLI 87
                7************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.34s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 1628.94
//
Query:       KIR64828.1  [L=730]
Description: CDP-glycerol:glycerophosphate glycerophosphotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.6e-113  376.9   0.0   1.2e-112  376.6   0.0    1.1  1  Glyphos_transf   CDP-Glycerol:Poly(glycerophosphate) glycerop
    1.4e-33  116.1   0.0    2.6e-33  115.2   0.0    1.4  1  Glycos_transf_2  Glycosyl transferase family 2
    7.7e-13   48.9   0.9    1.2e-12   48.3   0.2    1.7  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
    3.5e-08   33.3   0.0    4.9e-08   32.8   0.0    1.2  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
  ------ inclusion threshold ------
      0.078   12.9   0.0        6.6    6.8   0.0    2.4  2  MazE_antitoxin   Antidote-toxin recognition MazE, bacterial a
       0.12   11.9   0.8       0.27   10.7   0.0    1.9  2  Glyco_transf_21  Glycosyl transferase family 21
       0.14   12.7   0.0       0.44   11.1   0.0    1.8  1  Glyco_tranf_2_4  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glyphos_transf  CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.6   0.0  4.6e-116  1.2e-112       3     366 ..     358     725 ..     356     726 .. 0.97

  Alignments for each domain:
  == domain 1  score: 376.6 bits;  conditional E-value: 4.6e-116
                     .......G-EEEEEEEEBTTTTBS-HHHHHHHHHHHHH-TTSEEEEEESSGGG----SS-EEEETTSHHHHHHHHHEEEEEESS---TTS---TT CS
  Glyphos_transf   3 yrlqlrlpldkklvlfesfegkkvsdnpkalfeylrelapkvkivwvvkkdskarlkkgakvvkrnslrylllllrakylvsnsnfplyvrkrkn 97 
                     y  +lr+pld++l+++++++ +++++np+a++e++r+lap+v+ vw+v++d  ++l++g+++v  ++ +y  +l+ra+ lv+n+nfp+ vrkr++
      KIR64828.1 358 YLAELRRPLDPHLAVYAAYWFRGYACNPAAIYEAARRLAPQVRGVWIVRRDRVESLPPGVEYVVAGTREYHRVLARATWLVNNVNFPDFVRKRPG 452
                     678899***************************************************************************************** PP

                     SEEEE--SS--SB--GGG-S---.TS-HH...HHHHHHHTT-SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHHHHSTT-HHHHHHHHTT- CS
  Glyphos_transf  98 qvylqtwhGtpLkkmGldeeekk.aaatk...qellrevsswdylisaneestsifarafnikkeeiletGyPrnDvlvkaesedvkrireelgi 188
                      v++qt+hGtp k mGld++ ++ + a +   ++llr+v++wdy++san++st++++ra++  + ++le+GyPrnD lv+a+  +v+++r +lg+
      KIR64828.1 453 SVHVQTHHGTPVKVMGLDQQRYPvG-AVGmdfAKLLRRVDRWDYSVSANSFSTQMWERAYPAAY-TTLEVGYPRNDRLVTATDTEVREVRARLGL 545
                     ***********************63.444468********************************.****************************** PP

                     -SS-EEEEEE----GGG--GSS----TT-HHHHHHHHTTTEEEEE--SHHHHTT---......TT-TTTEEE-TT-S-HHHHHHT-SEEEESS-T CS
  Glyphos_transf 189 pkdkkvilyaPTwRddevgesyrfelkldlerlakalgedyvillklHpliqekiki......keksdyvvdvsdeedvedlllasDiLiTDYSS 277
                     + +++v+lyaPT+R+   g    +++ +d e l++alg   v+l++ H++ ++  +            +v dvs +++vedl+la+D+L+TDYSS
      KIR64828.1 546 APGDRVVLYAPTHREHLPG----YRPPFDPELLRDALGPTGVLLMRSHYFADRDRRPgldpgaGPGPARVRDVSGHDRVEDLYLAADVLVTDYSS 636
                     *******************....9*****************************9988887766666779************************** PP

                     HHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EESSHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHHHH CS
  Glyphos_transf 278 vmFDyavldrPiifyayDleeYsekrgfyldyekelPGpvveteeelieelksidkedeeyeekrrafrdkfckydDgrsservvrlif 366
                      mFDyavldrPi++ya+D+e Y+  rg+yld+ +e+PG+v++++  l++ + s++ + e ++ +rr+fr++fc+++Dg ++ervvr++f
      KIR64828.1 637 AMFDYAVLDRPIVVYAPDWEAYRLARGVYLDLLAEPPGAVTTSFPGLLDLFRSGAVDAEPATAARRRFRERFCALEDGHAAERVVRRVF 725
                     ****************************************************************************************9 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.0     1e-36   2.6e-33       1     130 [.       5     133 ..       5     171 .. 0.92

  Alignments for each domain:
  == domain 1  score: 115.2 bits;  conditional E-value: 1e-36
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      s v+p+y  ++ l e+l+s+l q p +d+e+i vDD S+D++ +il ++a++d+rv+ +r++ nvG++ a+n gl++a g+y++f+D Dd+ +p
       KIR64828.1   5 SFVVPAYRVQAFLSECLDSILGQ-PFDDVEVIGVDDHSPDGSGDILADYAARDHRVHAVRLDDNVGLGPARNVGLDRAGGEYVWFVDGDDWLAP 97 
                      78*********************.********************************************************************** PP

                      THHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC- CS
  Glycos_transf_2  95 dwleklvealekdgadvvlgqrprifgetdeiernk 130
                      d+l +++++l ++++dv l+ ++r +++ +  + ++
       KIR64828.1  98 DCLAEVAARLRRTRPDVLLVDHVRVRWDGRATRSAL 133
                      ************************999988777665 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.2   4.6e-16   1.2e-12       4     203 ..       4     201 ..       3     241 .. 0.72
   2 ?   -3.5   0.0       3.1     8e+03      28      67 ..     521     557 ..     517     561 .. 0.67

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 4.6e-16
  Glyco_tranf_2_3   4 lavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDdD 97 
                      ++++Vp+++ ++ l e+l+s+l q+ ++vev+ v+d s ++  + +   aa+  + rv+ v+ ++n g  g +r  n +l+++ +++v++vD+D
       KIR64828.1   4 ISFVVPAYRVQAFLSECLDSILGQPFDDVEVIGVDDHSPDGSGDILADYAARD-H-RVHAVRLDDNVGL-GPAR--NVGLDRAGGEYVWFVDGD 92 
                      689**************************************999987755554.5.89*******9997.5555..7***************** PP

  Glyco_tranf_2_3  98 tvvePdtlkrllqffltpkvgavg.tpvfll.nrstlvsalgal...efaerhlrflaarralgvltlnGsgslirrevlkelegldplfllt. 185
                      + + Pd l+ +++ +++ +++++   +v+++  ++++ sal ++    ++e+ +r   + +al+ l  + +  l+rre+l +l+ l+  f ++ 
       KIR64828.1  93 DWLAPDCLAEVAARLRRTRPDVLLvDHVRVRwDGRATRSALADVfptPPGEETFRLAERPEALRLLH-TAWNKLVRREFLVDLG-LR--FEPGw 182
                      ***************4444555553444555335555555555511145677777777778888874.67************94.33..33333 PP

  Glyco_tranf_2_3 186 .dDyelglrlrragfrtay 203
                       +D+  ++ l  a  r+ +
       KIR64828.1 183 yEDVAFSYPLLLAAERIGV 201
                      4888777666655555554 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.1
  Glyco_tranf_2_3  28 eypr.vevvvvvdesdaetlevaeelaaalpdvrvrvvvna 67 
                       ypr +++v  +d++ +e+++++  l  a++d rv+++ ++
       KIR64828.1 521 GYPRnDRLVTATDTEVREVRARLG-L--APGD-RVVLYAPT 557
                      577778888888888888888763.3..5666.77766555 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.9e-11   4.9e-08      28     104 ..      30     105 ..       5     121 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 1.9e-11
  Glyco_tranf_2_2  28 eeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfissDkfekilk 104
                      +++e+i vdd S++   + +    +  ++v      d   +l+ arN G ++a +++v F+D+D++ ++D ++ ++ 
       KIR64828.1  30 DDVEVIGVDDHSPDGSGDILADYAARDHRVHAVRL-DDNVGLGPARNVGLDRAGGEYVWFVDGDDWLAPDCLAEVAA 105
                      479********************999999986666.667899******************************98875 PP

>> MazE_antitoxin  Antidote-toxin recognition MazE, bacterial antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.025        64      18      40 ..      75      97 ..      73      98 .. 0.85
   2 ?    6.8   0.0    0.0026       6.6      13      30 ..     537     554 ..     537     555 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.025
                    HCCEEC.TCEEEEEECTTCCCCCC CS
  MazE_antitoxin 18 elgire.Gdevelevdgdkiilrp 40
                      g+++ G e +++vdg +++l+p
      KIR64828.1 75 NVGLDRaGGEYVWFVDG-DDWLAP 97
                    5688899*********9.699988 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0026
                     CCCHHHCCEECTCEEEEE CS
  MazE_antitoxin  13 kevrfelgireGdevele 30 
                     +evr  lg+ +Gd+v+l+
      KIR64828.1 537 REVRARLGLAPGDRVVLY 554
                     59**************96 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0001      0.27      24      84 ..      76     138 ..      58     176 .. 0.86
   2 ?   -2.3   0.6         1   2.6e+03     161     172 ..     229     239 ..     213     240 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0001
  Glyco_transf_21  24 qaleaakydllvisDsdvrvkpdyLeellaaled..pkvglVtslpvgsdakglaaaleaafl 84 
                       +l++a  +++++ D d  ++pd L+e++a+l++  p+v lV ++ v  d +   +al+ +f 
       KIR64828.1  76 VGLDRAGGEYVWFVDGDDWLAPDCLAEVAARLRRtrPDVLLVDHVRVRWDGRATRSALADVFP 138
                      5789999*************************98789**********9999999999998885 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1
  Glyco_transf_21 161 lrallaRqlrWa 172
                      +   ++R++rW+
       KIR64828.1 229 FV-QWHRVFRWM 239
                      33.4*******6 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00017      0.44       5      87 ..      15      98 ..      12     107 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
  Glyco_tranf_2_4  5 diLpeflahhlalgfdr..ilvydndstDgtrailkelpevkllhvdksyederrqve.llkallaryaeadwvlvvDaDEflvvp 87
                     ++L e+l+ +l   fd+  ++ +d++s Dg+ +il+ +++ ++  +    +d + +   +++  l+r a +++v +vD D  l+ +
       KIR64828.1 15 AFLSECLDSILGQPFDDveVIGVDDHSPDGSGDILADYAARDHRVHAVRLDD-NVGLGpARNVGLDR-AGGEYVWFVDGDDWLAPD 98
                     57888888888888886336668**************999999988888865.56654377777777.699*********988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.22s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 5250.42
//
Query:       KIR64829.1  [L=437]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.7e-33  114.1   0.0    1.4e-32  113.1   0.0    1.5  1  ABC_tran     ABC transporter
    2.1e-07   31.7   0.0    8.4e-07   29.7   0.0    2.1  1  OB_MalK      MalK OB fold domain
    2.4e-07   30.9   0.0      0.013   15.3   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00076   19.9   0.0     0.0028   18.1   0.0    1.9  2  AAA_16       AAA ATPase domain
     0.0018   18.2   0.0     0.0036   17.2   0.0    1.4  1  RsgA_GTPase  RsgA GTPase
     0.0022   17.5   0.0        1.2    8.6   0.0    2.2  2  SMC_N        RecF/RecN/SMC N terminal domain
     0.0046   17.2   0.0      0.029   14.7   0.0    2.1  2  AAA_22       AAA domain
     0.0058   16.6   0.0     0.0089   16.0   0.0    1.2  1  Rad17        Rad17 P-loop domain
     0.0082   15.9   0.0      0.017   14.9   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
     0.0096   16.1   0.5       0.14   12.3   0.2    2.8  2  TOBE_2       TOBE domain
  ------ inclusion threshold ------
       0.14   12.6   0.1       0.36   11.3   0.1    1.7  1  AAA          ATPase family associated with various cellular a
       0.15   11.7   0.0        0.2   11.3   0.0    1.1  1  AAA_15       AAA ATPase domain
       0.24   11.9   0.0       0.36   11.3   0.0    1.2  1  AAA_23       AAA domain
       0.24   11.3   0.0       0.39   10.6   0.0    1.2  1  ATPase_2     ATPase domain predominantly from Archaea
       0.28    9.9   0.0       0.41    9.4   0.0    1.1  1  Adeno_IVa2   Adenovirus IVa2 protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   0.0   1.1e-35   1.4e-32       2     136 ..      21     162 ..      20     163 .. 0.96

  Alignments for each domain:
  == domain 1  score: 113.1 bits;  conditional E-value: 1.1e-35
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 ++++l+++ ge ++++G++G+GKSt+l+++agl++pt+G +lldg+  ++  l+  +++i++++q+  l p++tv++n              + e++++
  KIR64829.1  21 DKINLDVNDGEFMVLLGPSGCGKSTVLRMIAGLEDPTSGAVLLDGELAND--LPPRDRKIAMVFQDFALYPHMTVGDNigfplrlagvdpsPRGERVAD 117
                 789*****************************************999988..************************************99999999*** PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++s lg+ ++  ++     s+LSgGq+qrva+ ra++++p l+l+DEp 
  KIR64829.1 118 VASALGIGDVLGRKP----SQLSGGQRQRVAMGRAIVRRPGLFLMDEPL 162
                 *********777776....*****************************7 PP

>> OB_MalK  MalK OB fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   7.1e-10   8.4e-07       1      53 []     236     293 ..     236     293 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 7.1e-10
     OB_MalK   1 GSPaMNflpatveedg...vlvegggvtlplpeeqkl...alklyagkevilGiRPEhi 53 
                 GSP MN+l+a v       v+++ g+ +l lp ++ +   a ++y+g+++++G+R E++
  KIR64829.1 236 GSPRMNLLEASVYVHLdryVALNLGEQSLYLPWDD-IrsrAVAHYHGERIVVGMRAEAL 293
                 9**********872223466666666666666666.2557*****************85 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.1e-05     0.013       1      55 [.      32      77 ..      32      92 .. 0.70
   2 !   13.5   0.0   3.9e-05     0.046     232     298 ..     130     194 ..     101     198 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpe 55
                ++vl Gp g+GKS++L+ + +l +         ++++     ++ ++ l+++d +
  KIR64829.1 32 FMVLLGPSGCGKSTVLRMIAGLED---------PTSGAVLLDGELANDLPPRDRK 77
                79*****************99943.........4444444555555555555555 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.9e-05
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 + +++lS G+++  a+  a+ r++   +l+l DEp ++L+  l ++l   +++l+r  g+  i +TH+
  KIR64829.1 130 RKPSQLSGGQRQRVAMGRAIVRRP---GLFLMDEPLSNLDSGLRAELRAEISALTReLGVTTIYVTHD 194
                 5678999999999999999**999...*********************888777777**********8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.3e-06    0.0028      20      51 ..      28      56 ..      21      89 .. 0.74
   2 ?   -2.7   0.0       5.5   6.6e+03     110     136 ..     292     324 ..     248     343 .. 0.61

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.3e-06
      AAA_16 20 rsgrpelvllsGesGvGKsslvrellralekd 51
                ++g  e ++l G+sG+GKs+++r+++  le+ 
  KIR64829.1 28 NDG--EFMVLLGPSGCGKSTVLRMIA-GLEDP 56
                444..789****************99.45554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.5
      AAA_16 110 elagaeasrllellkrllallsrder......p 136
                 +l++ ++    ++l+  +++l+++++       
  KIR64829.1 292 ALTPVAPDTPGHVLQGRIRYLEHHGHeslaflD 324
                 444444445555666666677776664444440 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     3e-06    0.0036      89     123 ..      19      54 ..       6      64 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3e-06
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpel 123
                  ++++++  ++d +++vl+G+SG GKSt++ ++++ +
   KIR64829.1  19 AVDKINLDVNDgEFMVLLGPSGCGKSTVLRMIAGLE 54 
                  5677777777779*****************998854 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0034       4.1      24      44 ..      30      50 ..      18      52 .. 0.82
   2 !    8.6   0.0   0.00098       1.2     134     213 ..     132     207 ..      69     214 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0034
                SSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldAi 44
                 +f +++Gp G+GKs +l  i
  KIR64829.1 30 GEFMVLLGPSGCGKSTVLRMI 50
                4799***********998655 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00098
                 TTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 134 kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtk 213
                 +++LSgG+++ va+    A   v++  l+l+De  ++LD   ++++   + + + +  +  i +++++ e      +v  
  KIR64829.1 132 PSQLSGGQRQRVAMGR--A--IVRRPGLFLMDEPLSNLDSGLRAELRAEISALTRELGVTTIYVTHDQAEALTMADRVAI 207
                 559******9877653..3..468889*****************999999999998777666666666655555555544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.4e-05     0.029       5      27 ..      30      52 ..      27      72 .. 0.88
   2 ?   -0.8   0.0       1.4   1.7e+03      79     100 ..     309     335 ..     254     343 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-05
      AAA_22  5 agilvvtGesGtGKTtllrrlle 27
                  ++v+ G+sG+GK+t+lr+++ 
  KIR64829.1 30 GEFMVLLGPSGCGKSTVLRMIAG 52
                6799***************9875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.4
      AAA_22  79 lealeqalrarav.....ielliiDEa 100
                 +++le++ ++  +       ++++DE+
  KIR64829.1 309 IRYLEHHGHESLAfldigATAIVVDEM 335
                 355555555555577777889999998 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   7.4e-06    0.0089      40      66 ..      25      51 ..       9      57 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.4e-06
       Rad17 40 LesrkkriLLisGPsGCgkstvvkvLs 66
                L+ +  + +++ GPsGCgkstv+++++
  KIR64829.1 25 LDVNDGEFMVLLGPSGCGKSTVLRMIA 51
                555666788999***********9986 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.4e-05     0.017      15      39 ..      21      47 ..      10      56 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.4e-05
      AAA_29 15 htieidlkg..atlltGpsGsGKSTll 39
                 +i++d+++  +++l GpsG GKST+l
  KIR64829.1 21 DKINLDVNDgeFMVLLGPSGCGKSTVL 47
                4455555555799************97 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.2   0.00012      0.14       1      54 [.     286     340 ..     286     350 .. 0.85
   2 ?    0.2   0.0      0.71   8.5e+02      44      76 .]     396     425 ..     391     425 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
      TOBE_2   1 laiRPEklrla.aagganglsGtVedveylGsstryvvelaggqlvvvrqpnadr 54 
                 ++ R E+l+   ++++++ l+G+++ +e+ G++++ ++++++ ++vv ++ n+++
  KIR64829.1 286 VGMRAEALTPVaPDTPGHVLQGRIRYLEHHGHESLAFLDIGATAIVVDEMGNRTE 340
                 68899****986555578***************************9999888874 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.71
      TOBE_2  44 lvvvrqpnadrdsalapGdtVelswdpddavvl 76 
                 +++vr ++ +   a+  G  +++s++ d+++++
  KIR64829.1 396 ELAVRLAPYP---AVSSGHPLAISVRMDALHFF 425
                 6778888888...999**************998 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1    0.0003      0.36       1      20 [.      33      52 ..      33      67 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0003
                EEEESSTTSSHHHHHHHHHH CS
         AAA  1 vllyGppGtGKTllakavak 20
                ++l Gp G+GK+++ + +a 
  KIR64829.1 33 MVLLGPSGCGKSTVLRMIAG 52
                789**************995 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00017       0.2      17      44 ..      23      51 ..      19      83 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
      AAA_15 17 veidlsee.ltvliGkNnsGKSsileald 44
                + +d+++  ++vl G+ ++GKS++l+++ 
  KIR64829.1 23 INLDVNDGeFMVLLGPSGCGKSTVLRMIA 51
                444444448*****************996 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0003      0.36      16      39 ..      26      50 ..      13      52 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0003
      AAA_23 16 dF.skgltlItGpNGaGKTTildAi 39
                d  +  + ++ Gp G+GK+T+l+ i
  KIR64829.1 26 DVnDGEFMVLLGPSGCGKSTVLRMI 50
                3334457799************987 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00033      0.39      18      41 ..      28      51 ..      17      61 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00033
    ATPase_2 18 epneiyfiYGpegsGKtaLlkeii 41
                +  e++++ Gp g+GK+++l+ i+
  KIR64829.1 28 NDGEFMVLLGPSGCGKSTVLRMIA 51
                567899**************9886 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00034      0.41      89     136 ..      32      77 ..       4      86 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00034
  Adeno_IVa2  89 iGviyGPtGsGksqllrnlissklisPiPetvifitPekdmipPeelk 136
                   v+ GP G+Gks +lr +  + l +P+  +v++     + +pP ++k
  KIR64829.1  32 FMVLLGPSGCGKSTVLRMI--AGLEDPTSGAVLLDGELANDLPPRDRK 77 
                 56899************76..467799998888888878888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 2759.94
//
Query:       KIR64830.1  [L=368]
Description: hypothetical protein TK50_04340 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2420.84
//
Query:       KIR64831.1  [L=113]
Description: hypothetical protein TK50_04345 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 751.19
//
Query:       KIR64832.1  [L=267]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-10   41.4   2.8    1.3e-10   41.4   2.8    2.3  3  HTH_31    Helix-turn-helix domain
      0.005   16.9   0.0      0.009   16.1   0.0    1.4  1  HTH_3     Helix-turn-helix
  ------ inclusion threshold ------
      0.034   14.1   0.0      0.059   13.4   0.0    1.3  1  HTH_19    Helix-turn-helix domain
       0.04   13.9   0.0       0.23   11.5   0.0    2.0  2  Pou       Pou domain - N-terminal to homeobox domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   2.8     3e-14   1.3e-10       2      56 ..      11      64 ..      10      70 .. 0.94
   2 ?   -2.7   0.0       1.8   7.9e+03      34      45 ..     179     190 ..     173     194 .. 0.72
   3 ?   -3.2   0.0       2.5   1.1e+04      39      53 ..     249     262 ..     242     264 .. 0.66

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 3e-14
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgl 56
                ++ +Lr+lR+ aGLsqe+++er+++s+s +  +Eq rr+ p++++  +  + lg 
  KIR64832.1 11 FAGELRRLRTGAGLSQEALGERVNYSASLVAAVEQCRRP-PREEFTQRCDDTLGG 64
                789***********************************7.**********99985 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
      HTH_31  34 lEqGrrgrpspa 45 
                 +E Grr+r+ ++
  KIR64832.1 179 VEMGRRPRVHLH 190
                 577888877666 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.5
      HTH_31  39 rgrpspavlealara 53 
                   +p  a+l+a+ +a
  KIR64832.1 249 A-LPHGATLTAIMEA 262
                 3.6777888887765 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     2e-06     0.009       1      38 [.      15      52 ..      15      64 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2e-06
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsl 38
                l++lR  +glsqe L e+++ s s +++ E  +r P+ 
  KIR64832.1 15 LRRLRTGAGLSQEALGERVNYSASLVAAVEQCRRPPRE 52
                899************************99987666665 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.3e-05     0.059       4      49 ..      15      58 ..      13      61 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
      HTH_19  4 LkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkia 49
                L+++R  +gl+qe+l er+  s s  +a E  +   p++e++ +++
  KIR64832.1 15 LRRLRTGAGLSQEALGERVNYSASLVAAVEQCR--RPPREEFTQRC 58
                8*****************************554..68889887776 PP

>> Pou  Pou domain - N-terminal to homeobox domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.1e-05      0.23       6      31 ..       8      33 ..       4      42 .. 0.91
   2 ?   -0.8   0.0      0.34   1.5e+03      33      50 ..      86     103 ..      70     105 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.1e-05
         Pou  6 leefakefkqkRiklgltQadvglaL 31
                le fa e+++ R+  gl+Q+ +g+  
  KIR64832.1  8 LELFAGELRRLRTGAGLSQEALGERV 33
                89*******************99865 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.34
         Pou  33 klygkefSqttIcrFEkL 50 
                 +++  e   tt++ FE L
  KIR64832.1  86 EWVTIEQEATTLRSFEPL 103
                 445555578999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1785.97
//
Query:       KIR64833.1  [L=62]
Description: hypothetical protein TK50_04355 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-25   88.1   1.5    3.1e-25   88.0   1.5    1.0  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   1.5   1.7e-29   3.1e-25       1      54 []       6      60 ..       6      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 1.7e-29
      DUF397  1 atWrKSsySgggggnCVEvaalpd.avavRDSkdpdgpvLtftpaewaaFlagvk 54
                atWrKSs+S+g++gnCVEva   + avavRDSkd+ gpvL+f pa+waaF+a++k
  KIR64833.1  6 ATWRKSSRSSGNQGNCVEVADDLPgAVAVRDSKDRRGPVLVFAPASWAAFVAQAK 60
                69*****************66655779*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 412.41
//
Query:       KIR64834.1  [L=1032]
Description: hypothetical protein TK50_04360 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-10   39.9   0.0    6.8e-10   39.0   0.0    1.4  1  Peptidase_M48  Peptidase family M48
     0.0051   16.1   0.0      0.012   14.8   0.0    1.6  2  Peptidase_M56  BlaR1 peptidase M56
  ------ inclusion threshold ------
        0.7    9.5   3.0        3.2    7.4   0.3    2.6  2  TMEM100        Transmembrane protein 100


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   1.1e-13   6.8e-10      24     194 ..     175     357 ..     161     359 .. 0.77

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 1.1e-13
                    EEEEEEE-GGGT-EEEEESSS-E.EEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHH.HHHHHHHHHHHHHHHHHHTT-SHHHHHTT--S-- CS
                    xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48  24 ltkvyvvnspkrNAFalgggknk.rivltdgLlkqllseeelaaVlGHElGHikhrhsvvs.livsllasillllglallisraeedaagafldal 117
                     ++++++  p r AF++g   ++  +vl  g      +++    V  HEl+H+ +r+++   ++++l++  +  +++ +l++ a++++ +     +
     KIR64834.1 175 RPRLLIAGPPVRQAFTIGVVGRRpLVVLPAGVAVAYRDPARFDPVVQHELAHVRARDVTWAaAVRGLVWLPVPAVAAGILVEIASNQQTSPLS--Q 268
                    577888888999*******99999**********************************98867777777777777777776666666555443..3 PP

                    -HHHHHHHHHHTT............HHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S--.-HHHHHHS-SS--HHHHHHHHHH CS
                    xxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48 118 avliglliillfl............alSRkrEyqADeagvellkrakdlvraliklakdlerqdvs.aslrsellstHPplleRiqalke 194
                    ++  +l + ll +             l R rE++AD++++++++ a++l+  l + a++ + + +  a + +  ++ HP  l+R+++l++
     KIR64834.1 269 TTSRWLGGSLLTVlllaglvtllaaSLLRMREREADRHAARAGQ-ADALAALLRDAAARTAPAGNRlAVALRSPFARHPRPLDRVRSLRQ 357
                    3333333333333355789999999999****************.88888888887776665443312333389999**********997 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.1e-06     0.012     117     218 ..     133     238 ..     112     245 .. 0.66
   2 ?   -3.4   0.0      0.72   4.3e+03     105     147 ..     279     316 ..     256     326 .. 0.51

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.1e-06
  Peptidase_M56 117 llyliaallvlkkrfvrklgklraeelkeaLkeakeemql...krnikirlsssidsPavlgll..kprIvlPadflkklsd.eeleyillHElaH 206
                    ll l+ a+ +++  + r++g+ +   + ++ ++   + +l    r+  +   + + + +++g++  +p +vlPa ++  + d ++ + ++ HElaH
     KIR64834.1 133 LLLLVPAVDQWR--LRRHRGRFAVPGAADRFDALCDDNGLtgrNRPRLLIAGPPVRQAFTIGVVgrRPLVVLPAGVAVAYRDpARFDPVVQHELAH 226
                    455555555555..445555555555555555555555431113344444556677777888876689*********9998735679********* PP

  Peptidase_M56 207 lkrkDllvnllv 218
                    ++ +D+ + + v
     KIR64834.1 227 VRARDVTWAAAV 238
                    *****9997755 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.72
  Peptidase_M56 105 llliWivgalilllyliaallvlkkrfvrklgklraeelkeaL 147
                    l+++ ++g +   + l+a+ll +++r   + ++ ++  + +aL
     KIR64834.1 279 LTVLLLAGLV---TLLAASLLRMRER--EADRHAARAGQADAL 316
                    3333333333...4566777777766..333333333444444 PP

>> TMEM100  Transmembrane protein 100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.3   0.00053       3.2      86     113 ..     121     149 ..     116     153 .. 0.87
   2 ?    1.4   0.2     0.037   2.2e+02      90     116 ..     280     307 ..     268     321 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00053
     TMEM100  86 svlglvLLsaGlvllassav.CWkvrrrr 113
                   +g+vL  a l+ll++ av  W++rr+r
  KIR64834.1 121 GAVGVVLAGAALLLLLVPAVdQWRLRRHR 149
                 579**************99956****998 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.037
     TMEM100  90 lvLLsaGlvllassav.CWkvrrrrkke 116
                  vLL aGlv l+++++   + r+  +++
  KIR64834.1 280 TVLLLAGLVTLLAASLlRMREREADRHA 307
                 4788899987766655044444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1032 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.50
# Mc/sec: 6245.26
//
Query:       KIR64835.1  [L=211]
Description: hypothetical protein TK50_04365 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1433.00
//
Query:       KIR64836.1  [L=155]
Description: hypothetical protein TK50_04370 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-23   83.0   0.0    2.2e-23   82.8   0.0    1.0  1  DUF4442   Domain of unknown function (DUF4442)
  ------ inclusion threshold ------
      0.028   14.6   1.0      0.028   14.6   1.0    1.7  2  DUF350    Domain of Unknown Function (DUF350)


Domain annotation for each model (and alignments):
>> DUF4442  Domain of unknown function (DUF4442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   2.4e-27   2.2e-23       3     131 ..       6     150 ..       4     151 .. 0.91

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 2.4e-27
                 HHHHHHHHHHSGGGGGG--EEEEEETT.....EEEEEE---GGGB-TTSSB-HHHHHHHHHHHHHHHHHHHS-T...TEEEEEEEEEEEE-S---S-EE CS
     DUF4442   3 elfsaavslkaPYfgtvgprieelepg.....raevrlkkrrrvrNhigtvHAiAicnlaElamGllaeatlpd...thrwipkgmevdYlakatgdlt 93 
                 + + a++  ++P+ +t+g+ + e++p+     ra+vrl++ ++++Nh+g+ HA+A+++l E+a+G+++ a++++   +++++   +e++Y + a g + 
  KIR64836.1   6 RQVAAGMLEAVPFARTLGVEFVEVAPEadggvRAVVRLPDSPATHNHVGGPHAGAMFALGETASGAVVLAAFGQlldRAVPLAVRAEIAYGKVAMGPVL 104
                 567899999*****************99999****************************************99988899******************** PP

                 EEEE-TT...S-T......T--EEEEEEEEEEETTE.EEEEEEEEEE CS
     DUF4442  94 avaelep...edv......gekeelvvevevrdekgeevvraeitlw 131
                 a+a+l +   e v      g+++e++v+ve+ +e+g+  + +++ ++
  KIR64836.1 105 ATARLGRpapE-VvaeleaGRRPEFPVDVEIATEDGTPTSAMTVVWT 150
                 ******97751.3555566889**************99999988886 PP

>> DUF350  Domain of Unknown Function (DUF350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.87   7.8e+03      28      40 ..       3      15 ..       3      16 .. 0.69
   2 ?   14.6   1.0   3.1e-06     0.028       3      43 ..      68     108 ..      67     110 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.87
      DUF350 28 IkqgnnAaaivla 40
                I  +++Aa+++ a
  KIR64836.1  3 IDSRQVAAGMLEA 15
                5567789988755 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.1e-06
      DUF350   3 vvGivllllgffvfdllTpgklgelIkqgnnAaaivlagvi 43 
                 + G v+l+++  ++d+ +p  ++++I  g++A++ vla + 
  KIR64836.1  68 ASGAVVLAAFGQLLDRAVPLAVRAEIAYGKVAMGPVLATAR 108
                 5699*********************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1142.10
//
Query:       KIR64837.1  [L=250]
Description: hypothetical protein TK50_04375 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-11   45.3   0.8    3.2e-11   43.9   0.8    1.6  1  Hydrolase       haloacid dehalogenase-like hydrolase
    3.8e-11   43.4   0.0    2.8e-10   40.6   0.0    1.9  1  HAD_2           Haloacid dehalogenase-like hydrolase
    0.00013   22.0   2.2    0.00022   21.2   0.8    2.1  2  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
      0.014   15.8   1.8      0.085   13.3   1.6    2.1  1  HAD             haloacid dehalogenase-like hydrolase
       0.14   12.2   0.0         16    5.6   0.0    2.6  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase
       0.23   11.3   0.0        3.2    7.6   0.0    2.1  2  NT5C            5' nucleotidase, deoxy (Pyrimidine), cytosoli


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.8   1.1e-14   3.2e-11       2     210 .]       9     212 ..       8     212 .. 0.68

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 1.1e-14
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHH.HHHHHHHHHHHHHHHHETTTEHHHHTHHH......HHHHH.....HCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxx.....xxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkal.vaaakarsgaltgfatfigrgayaigkpe......wltal.....dippdlga 88 
                 ++++fD+dG+Lt++ +++  ++ +                 + a+ ++ a a ++++  f   ++ ++y  gkp+      +l++      + +pd   
  KIR64837.1   9 TACLFDLDGVLTQTARVHNAAWTET----------------FDAFlQRRAAATGEPYRPFDPGPDYNRYVDGKPRadgvrsFLASRgivlpEGSPDDPP 91 
                 799**********************................6666555555555556666665555556666666444444666666655533333333 PP

                 HHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.....GGGESEEEEHHCESSTTTSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  89 aigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.....ddyfdaviasdietvakpspegkvaa 182
                 + ++  + g     +   + ++ t  d  +v+p+ +  +++  +ag++ ++++ +     + +   +G     +  +d+v+a++    +kp+p+ ++a 
  KIR64837.1  92 DADTVHGVGNRKNAV--LLKRIHT--DGVEVYPGSVTYLRAAADAGLRRAVVSASAN--CRDVVAAAGlesllQARVDGVVAREQGLRGKPHPDTFLAG 184
                 333333333222222..2333333..5566*****************9999995544..4433333443266444457888887777************ PP

                 HHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 183 ireLqgkpeevamVGDgvnDaaalaaAg 210
                 ++ L+++p++ a+++D + ++aa++a g
  KIR64837.1 185 AKLLGVDPAQAAVFEDALAGVAAGRAGG 212
                 ************************9976 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   9.2e-14   2.8e-10       1     173 [.      11     213 ..      11     217 .. 0.74

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 9.2e-14
       HAD_2   1 iiFDlDgTlldteeliiqafnelleey.......................glselseeelrkliglslrellrklgeseeeee................ 60 
                 ++FDlDg+l  t  ++ +a++e+++ +                                   + g +  + +r +  s                     
  KIR64837.1  11 CLFDLDGVLTQTARVHNAAWTETFDAFlqrraaatgepyrpfdpgpdynrY-----------VDGKPRADGVRSFLASRGIVLpegspddppdadtvhg 98 
                 69*********************************9998655554444443...........5555555555555554443335555555666668888 PP

       HAD_2  61 ..kieellrkyneekkkkevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgi....esyFdvivtsedvekkKPdpeviekaleklklkke 153
                   +  +      ++ +++ v++y+g   +L   ++ag++ ++v+ +  ++ ++ +++ g+    +   d +v  e+  + KP+p+++++  + l+++++
  KIR64837.1  99 vgN--RKNAVLLKRIHTDGVEVYPGSVTYLRAAADAGLRRAVVSAS--ANCRDVVAAAGLesllQARVDGVVAREQGLRGKPHPDTFLAGAKLLGVDPA 193
                 553..3333444455556*************************976..344444555554000055667899999999********************* PP

       HAD_2 154 eviyvGDsptDieaakkagi 173
                 ++ +++D   ++ a+++ g 
  KIR64837.1 194 QAAVFEDALAGVAAGRAGGF 213
                 **************998775 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.75   2.2e+03       9      46 ..     124     137 ..     120     156 .. 0.62
   2 !   21.2   0.8   7.5e-08   0.00022       2      75 .]     173     243 ..     172     243 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.75
                     HHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEE CS
  Hydrolase_like   9 mydfalevlgsdpeevlmiGDrlatDiagAnnaGwksv 46 
                     +y +a+++ g+                        + +
      KIR64837.1 124 TYLRAAADAGL------------------------RRA 137
                     55555555544........................433 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 7.5e-08
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEES- CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddlaea 75 
                     +gKP+p ++ + ++ lg+dp++  +  D   + +a++++ G   v     v ++++l+  +h++++v+ dla++
      KIR64837.1 173 RGKPHPDTFLAGAKLLGVDPAQAAVFEDA-LAGVAAGRAGGFGYVVGVDRVGQADELR--AHGADVVVTDLADL 243
                     59***************************.9**********98876555565665555..79*********986 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.6   2.8e-05     0.085       2     122 ..      12     152 ..      11     209 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.8e-05
         HAD   2 lfDfDgTLldgdsle.....lllrfllrrgaprlwralrek.lllal..frellrldraglaellea....llagls.eelaaelerfv.........a 78 
                 lfD+Dg L+++   +     + ++++l+r+a  +++ +r++ +  ++  +   ++ + +g++ +l++    l +g + ++ +a+  + v          
  KIR64837.1  12 LFDLDGVLTQTARVHnaawtETFDAFLQRRAAATGEPYRPFdPGPDYnrY-VDGKPRADGVRSFLASrgivLPEGSPdDPPDADTVHGVgnrknavllK 109
                 8**********999999999888889999999999999999844444422.333333566666666677774455555555555555555665444432 PP

         HAD  79 evirpk......lldpgalellaahraaGdrvvvvSgg..lrplvepllael 122
                      +        +pg +++l+a+++aG r +vvS++       + + a+ 
  KIR64837.1 110 -----RihtdgvEVYPGSVTYLRAAADAGLRRAVVSASanC----RDVVAAA 152
                 .....2333344255********************987333....3333333 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0055        16       2      16 ..      12      26 ..      11      45 .. 0.80
   2 ?    3.9   0.0     0.019        57      11      53 ..     114     156 ..     104     171 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0055
                 EEESTTTSEETTEE- CS
  Hydrolase_6  2 lfDidGvLwrgdkai 16
                 lfD+dGvL +  ++ 
   KIR64837.1 12 LFDLDGVLTQTARVH 26
                 8*******9987765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.019
                  ETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHHHH CS
  Hydrolase_6  11 rgdkaipgaaealnalraagkpvvllTNnsskseeeyakklek 53 
                  +g +++pg++  l+a  +ag + ++++ +++      a+ le+
   KIR64837.1 114 DGVEVYPGSVTYLRAAADAGLRRAVVSASANCRDVVAAAGLES 156
                  577899****************999999888876666666655 PP

>> NT5C  5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0011       3.2       5      35 ..      12      42 ..       8      62 .. 0.79
   2 ?    1.5   0.0     0.081   2.4e+02      66      93 ..     116     144 ..     106     165 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0011
        NT5C  5 lvDlDgvladlygkmlevankrfeatllpee 35
                l+DlDgvl+++ + + + + ++f+a l++  
  KIR64837.1 12 LFDLDGVLTQTARVHNAAWTETFDAFLQRRA 42
                89**********************9965543 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.081
        NT5C  66 lepipgarevLeeladeg.rlvvitaall 93 
                 +e  pg++ +L+  ad g r  v++a++ 
  KIR64837.1 116 VEVYPGSVTYLRAAADAGlRRAVVSASAN 144
                 67789*************77667766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1778.78
//
Query:       KIR64838.1  [L=790]
Description: glycosyl hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.4e-130  434.9   0.0     3e-130  434.6   0.0    1.1  1  Glyco_hydro_65m  Glycosyl hydrolase family 65 central catalyt
    4.3e-62  209.7   0.0    2.9e-61  207.0   0.0    2.0  2  Glyco_hydro_65N  Glycosyl hydrolase family 65, N-terminal dom
    1.1e-16   60.4   2.1    2.2e-16   59.5   0.6    2.5  2  Glyco_hydro_65C  Glycosyl hydrolase family 65, C-terminal dom


Domain annotation for each model (and alignments):
>> Glyco_hydro_65m  Glycosyl hydrolase family 65 central catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  434.6   0.0    5e-134    3e-130       1     387 []     327     696 ..     327     696 .. 0.99

  Alignments for each domain:
  == domain 1  score: 434.6 bits;  conditional E-value: 5e-134
  Glyco_hydro_65m   1 rlalfhllqtlaaadarldvgakGltGegYrGhvfWDtElfvlPlylltepevarnlLeyRynrleaArekAkekglkGAlyPwesasdGeEes 94 
                      r+ lfh+lq  a+a++r  ++akGltG gY+Gh+fWDtE+fvlP++++t+p ++r++L +Ry++l +A+e+A+  +l GA++Pw++++ G E+s
       KIR64838.1 327 RFGLFHVLQSGARAERR-PISAKGLTGPGYDGHAFWDTEMFVLPVLTYTQPGAVRDALYWRYSTLAQAQERARTLNLAGAAFPWRTIE-GPESS 418
                      799************99.9*********************************************************************.***99 PP

  Glyco_hydro_65m  95 qelhlnirsgewepdaseeeiHvnaaiayavvqYveatgDeefleeeglellvetarfWasraeldkdkgryeidgviGPdEYeenvdnNaytn 188
                               ++w+  a+++++H++a+ia a+ +Yv +tgDe +++e glellvetar+W+s++++d+ +gr++idgv+GPdEY+++ ++N+ytn
       KIR64838.1 419 ---------AYWP--AGTAAFHIAADIADALRRYVLVTGDEGLEREIGLELLVETARLWRSLGHHDR-HGRFHIDGVTGPDEYTAVKNDNVYTN 500
                      .........****..***************************************************8.8************************* PP

  Glyco_hydro_65m 189 liaawnlelalealeeleeeaeklevkeeelekwekvleklylpideelgviaqkdgflelaeldleeykalagdetdlllkaegdkvlesqvi 282
                      l+a++nl +a++ + ++  +a +l+v+eee ++w+++++++ +p+de   v++q +gf++l+e+d+e+   +  ++++lll++ + +++++qvi
       KIR64838.1 501 LMAQRNLLTAAQCAMRFRDQAIGLGVTEEEAAAWRDAANAMCVPYDEGVEVHEQVEGFTRLQEWDFEH---TPTEKYPLLLHYPYFDLYRKQVI 591
                      ********************************************************************...99999****************** PP

  Glyco_hydro_65m 283 KQaDvllllyllkeefseeqikanldfYeprtvhdSslSalvhaivaaelgklekalelfkeaariDldaqerstedGiHiaslagtleaivqg 376
                      KQaD++l++++  ++f+ee++++n+ + e+rtv+dSslSa+++a++aae+g le a+ +++eaa +Dl++ +++t+dG+H+aslag++ a+v+g
       KIR64838.1 592 KQADLVLAMHWRGDAFTEEEKRRNFLYCERRTVRDSSLSACTQAVIAAEVGYLELAHRYLREAALMDLHDLNENTRDGVHMASLAGAWIALVAG 685
                      ********************************************************************************************** PP

  Glyco_hydro_65m 377 faglrlregel 387
                      f+glr ++g l
       KIR64838.1 686 FGGLRDHDGML 696
                      *****999865 PP

>> Glyco_hydro_65N  Glycosyl hydrolase family 65, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.0   0.0   4.8e-65   2.9e-61       2     227 ..      16     270 ..      15     271 .. 0.92
   2 ?    0.0   0.1     0.091   5.4e+02      73     120 ..     710     755 ..     704     759 .. 0.79

  Alignments for each domain:
  == domain 1  score: 207.0 bits;  conditional E-value: 4.8e-65
                      ......S--HHHHHHT-EE-SSEEE----TTTT.--..-EEETT-EE-T...........TSSS-EE----EEEEEEEEETTEE--GGGSEEEE CS
  Glyco_hydro_65N   2 etgfdpeeeglrEslftlGNGylGtRgafeeey.sd.pgtyiaGvYdreis...eeanGypeeneelvnlpdwlglrlrvdgeeldldegeild 90 
                      et++d + ++++Es+f+l+NG++G+Rg+++e +  + pgty++ +Y+ ++    e+++G+pe+++++vn+++ + +rl vd+e+ld+++ge+l 
       KIR64838.1  16 ETRLDMDVLAQSESVFALSNGHIGLRGNLDEGEpHGlPGTYLNSFYELRPLpyaEAGFGFPESGQTIVNVTNGKLIRLLVDDEPLDVRYGELLA 109
                      8999***************************4423378********99966778**************************************** PP

                      EEEEEETTTTEEEEEEEEE-TTS-EEEEEEEEEE-SSSTTEEEEEEEEEESS--EEEEEEEEEETT--B......................... CS
  Glyco_hydro_65N  91 yereLdlreGvltrsltwrspagkevrveserfvsladrhlaairlevtplnfsgevevesgldgdvan...ekhkdprka............. 168
                      +er Ldlr+G+l+r+l+wr+pag+ev+v+s+r+vs+++r +a+i++ev++++ + ++ ++s+l +++     +  +dpr+a             
       KIR64838.1 110 HERILDLRAGTLHRELHWRTPAGREVKVRSTRLVSFTQRSVACINYEVEAVDGPLRLILQSELVANENLpaqS--RDPRVAavlesplqaeeel 201
                      ******************************************************************9997441..5555556666666667778 PP

                      .......EEEEETTSS-EEEEEEEEEEEETTEE--SEE...SEEEEEEEEEE-TT-EEEEEEEEEEEET CS
  Glyco_hydro_65N 169 .......levrtresgitvavaartrveasgeklevee...ekiaqtlsvelkagetvtleKyvavats 227
                             l +rt+ sg++va+a++++v a+++++ ++e   +++++t+ + lk+ge++++ Ky a+ +s
       KIR64838.1 202 ttndgglLIHRTKVSGLRVAAAMDHDVHAPEHTTVTTEgyeDWVRTTVGCVLKPGEKLRVVKYLAYGWS 270
                      888899**************************8888779***************************998 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.091
                      EEEETTEE--GGGSEEEEEEEEEETTTTEEEEEEEEE-TTS-EEEEEE CS
  Glyco_hydro_65N  73 rlrvdgeeldldegeildyereLdlreGvltrsltwrspagkevrves 120
                      +++++   l+l+ ++++ ++ +  lr+G     +++r   g++vrv++
       KIR64838.1 710 EFSLQWRGLRLR-VDVRAHQTTYALRHGRADDVVELRHH-GEKVRVTY 755
                      555555557887.69***************999999875.57788876 PP

>> Glyco_hydro_65C  Glycosyl hydrolase family 65, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.4   8.2e+03      30      49 ..      81     100 ..      79     102 .. 0.68
   2 !   59.5   0.6   3.7e-20   2.2e-16       1      51 []     700     753 ..     700     753 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.4
                      EEEEEESSSTEEEEETTEEE CS
  Glyco_hydro_65C  30 vtvtlesgepltievyGeev 49 
                      + v++  g+ +++ v +e++
       KIR64838.1  81 TIVNVTNGKLIRLLVDDEPL 100
                      55666667778888888876 PP

  == domain 2  score: 59.5 bits;  conditional E-value: 3.7e-20
                      ----TT-SEEEEEEEETTEEEEEEEESSEEEEEEES...SSTEEEEETTEEEEE CS
  Glyco_hydro_65C   1 PrLPeeWdglsFrlryRGrrLrVrvtpeevtvtles...gepltievyGeevtL 51 
                      PrLP+++d+l+F+l++RG rLrV+v+ +++t+ l++   ++ ++++++Ge+v++
       KIR64838.1 700 PRLPSRLDRLEFSLQWRGLRLRVDVRAHQTTYALRHgraDDVVELRHHGEKVRV 753
                      9***********************************77666**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5439.67
//
Query:       KIR64839.1  [L=60]
Description: hypothetical protein TK50_04385 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        4.2    5.5   8.8        4.2    5.5   8.8    1.0  1  Atrophin-1  Atrophin-1 family


Domain annotation for each model (and alignments):
>> Atrophin-1  Atrophin-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.8   0.00024       4.2     599     639 ..       4      44 ..       1      58 [. 0.50

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.00024
  Atrophin-1 599 erekerekererererereaeraakasssshesrlsepqla 639
                  +++ +++  er+ +rer+aer+   +  + ++r ++ + a
  KIR64839.1   4 RQDRSKQQTAERDEQRERDAERSRDWADEAAQARTADDPRA 44 
                 34455555555555566666666555555555555544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1196  (0.0667076); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 476.02
//
Query:       KIR64840.1  [L=118]
Description: thioredoxin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-24   84.0   0.0      7e-24   83.8   0.0    1.0  1  Thioredoxin    Thioredoxin
      6e-08   32.9   0.0    1.3e-06   28.7   0.0    1.9  2  Thioredoxin_8  Thioredoxin-like
    7.9e-07   29.5   0.1      1e-05   25.9   0.1    2.0  1  Thioredoxin_2  Thioredoxin-like domain
      1e-06   28.5   0.1    6.7e-06   25.9   0.1    1.8  2  Redoxin        Redoxin
    5.1e-06   26.4   0.0    5.6e-06   26.3   0.0    1.2  1  HyaE           Hydrogenase-1 expression protein HyaE
    9.5e-06   25.5   0.0    1.9e-05   24.6   0.0    1.5  1  AhpC-TSA       AhpC/TSA family
    0.00034   20.7   0.1    0.00054   20.1   0.1    1.4  1  Thioredoxin_7  Thioredoxin-like
     0.0077   16.4   0.0      0.011   15.9   0.0    1.3  1  Glutaredoxin   Glutaredoxin
     0.0099   15.9   0.0      0.013   15.5   0.0    1.2  1  Thioredoxin_3  Thioredoxin domain
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.023   14.5   0.0    1.1  1  Thioredoxin_9  Thioredoxin
      0.071   13.5   0.0      0.087   13.3   0.0    1.1  1  DUF836         Glutaredoxin-like domain (DUF836)
      0.085   11.8   0.0        0.1   11.5   0.0    1.1  1  Phosducin      Phosducin
      0.089   12.6   0.0        0.1   12.4   0.0    1.0  1  DIM1           Mitosis protein DIM1


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   5.1e-27     7e-24       4      98 ..      12     106 ..       9     111 .. 0.96

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 5.1e-27
                  ESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHH CS
  Thioredoxin   4 vltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekekla 98 
                   +t+++F ++v +++++v+v+F+A+wC++C a++  l++la e+ d+++++ +++den+ + + y+v ++Ptl++f++g+ v +++gar+k++l+
   KIR64840.1  12 AVTDASFAATVLAADRPVVVDFWAEWCPPCVAVSRSLAELAVEFGDRLRIVTLNTDENPATTRAYQVMSMPTLLVFRDGEVVGSTVGARPKSNLR 106
                  6899***************************************************************************************9986 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   9.2e-10   1.3e-06       2      52 ..      27      75 ..      26      77 .. 0.91
   2 ?    3.5   0.0     0.064        88      76      90 ..      74      88 ..      69      93 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 9.2e-10
                   SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHH CS
  Thioredoxin_8  2 kvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefek 52
                   + v++ f+a+wcppc a+ ++l el  ++   ++++iv ++ d++   +++
     KIR64840.1 27 RPVVVDFWAEWCPPCVAVSRSLAELAVEFG--DRLRIVTLNTDENPATTRA 75
                   789**************************9..***********98766655 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.064
                   T-S--TT-SEEEEE- CS
  Thioredoxin_8 76 kkynvkaiPtlvvld 90
                   + y+v+++Ptl+v +
     KIR64840.1 74 RAYQVMSMPTLLVFR 88
                   689********9986 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   7.6e-09     1e-05       5     105 ..      26     105 ..      22     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 7.6e-09
  Thioredoxin_2   5 gkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPt.ivfldgkeivarlpGy 99 
                     +pv+v+f++++Cp C +  + l el    v      +++     +v + ++++++             r+y+v ++Pt +vf dg+ +v   +G+
     KIR64840.1  26 DRPVVVDFWAEWCPPCVAVSRSLAEL---AVE-----FGDR--LRIVTLNTDENPA-----------TTRAYQVMSMPTlLVFRDGE-VVGSTVGA 99 
                    589***************99999999...455.....6677..7777888888886...........7899********888*****.88888998 PP

  Thioredoxin_2 100 vpaeel 105
                     p+ +l
     KIR64840.1 100 RPKSNL 105
                    887665 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   4.9e-09   6.7e-06      12      78 ..       9      74 ..       1      84 [. 0.77
   2 ?    5.0   0.0     0.014        19      87     140 ..      62     102 ..      56     108 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 4.9e-09
                CEETTCEEEEEHHH.HTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHH CS
     Redoxin 12 plaatdgnsvslse.fkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvke 78
                pl+a    s+      ++++vvv f++  +cP+C a  + l++la +++++   +v +++d+++  ++
  KIR64840.1  9 PLTAVTDASFAATVlAADRPVVVDFWAE-WCPPCVAVSRSLAELAVEFGDR-LRIVTLNTDENPATTR 74
                555555566666666789**********.*********9999998888888.8888888888887433 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.014
                 SEEEE-TTSHHHHHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSCHTST CS
     Redoxin  87 fpvlsDgsaaftkalGlrleedaseglrtpryavidedgkvvylevepepetee 140
                 +++ +D++ a t+a+ +           +p++ ++ +dg vv   v++ p   +
  KIR64840.1  62 VTLNTDENPATTRAYQVM---------SMPTL-LVFRDGEVVGSTVGARP---K 102
                 6678999********955.........67765.66689999999998887...3 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0     4e-09   5.6e-06      42     102 ..      40      99 ..       7     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 4e-09
                 SSS-HCHHHHHHHCT-TTS-EEEEEETHHHHHHHHHCCT-TSSSEEEEEETTEEEEEEESS CS
        HyaE  42 EvsDvaVvlpEllkaFpnalraavvadreqeealaerfgvlktPsllflrdgeylgvlaki 102
                  ++ v   l+El  +F ++lr++ ++ ++++ a  + ++v+ +P+ll++rdge++g+  + 
  KIR64840.1  40 PCVAVSRSLAELAVEFGDRLRIVTLN-TDENPATTRAYQVMSMPTLLVFRDGEVVGSTVGA 99 
                 556666679**************999.788889999********************87665 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.4e-08   1.9e-05      24      73 ..      25      72 ..       7      91 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.4e-08
                TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHH CS
    AhpC-TSA 24 kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspesh 73
                +++pvv+ f+++ wcp+C +  ++la+l+ ef +  + ++ +++d+  + 
  KIR64840.1 25 ADRPVVVDFWAE-WCPPCVAVSRSLAELAVEFGD-RLRIVTLNTDENPAT 72
                579*********.********************5.588999999877644 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   3.9e-07   0.00054      14      81 ..      23      87 ..      14      89 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.9e-07
                   HHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT---.SSEEEEE CS
  Thioredoxin_7 14 aergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanileldeqg.vPvvafl 81
                    +  +pv v+f a+wc++C+a+ r +++     + + ++   ++++ +e+ a + + ++    P+++++
     KIR64840.1 23 LAADRPVVVDFWAEWCPPCVAVSRSLAEL--AVE-FGDRLRIVTLNTDENPATT-RAYQVMsMPTLLVF 87
                   67899*******************99876..445.6777777777776666655.32322247777666 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     8e-06     0.011       4      55 ..      33      86 ..      29      93 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8e-06
                  EESTSSHHHHHHHHHHHHTTGGE..EEEEGCCSHHHHHHHHHHHTSSSSSEEEE CS
  Glutaredoxin  4 ftkptCpyCkkakrlLkelgvkf..eeidvdkdeeireelkelsgvrtvPqvfi 55
                  f   +Cp C+++ r L el v+f  + + v+ + ++  +  +   v+++P++ +
    KIR64840.1 33 FWAEWCPPCVAVSRSLAELAVEFgdRLRIVTLNTDENPATTRAYQVMSMPTLLV 86
                  56689***************9964344444444433333333337777777665 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   9.7e-06     0.013      10      60 ..      38      93 ..      29     104 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.7e-06
                   STTCHHHHHHHHHHCHCCT..CECEEECCTTHHHH.HHCT-SSSSEE..ECTTCEE CS
  Thioredoxin_3 10 CakCpklekavkeaaaekg..ikaevekvtdfeei.ekygVmsvPal..vidgkvv 60
                   C+ C ++++ ++e+a e g  + +   ++ +++     y+Vms P+l  + dg+vv
     KIR64840.1 38 CPPCVAVSRSLAELAVEFGdrLRIVTLNTDENPATtRAYQVMSMPTLlvFRDGEVV 93
                   *****9999999999999733555445555555557**********9534478876 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.6e-05     0.023      49     120 ..      34     103 ..      13     108 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.6e-05
                    --TT-HHHHHHHHHHHHHH.HH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS-HH CS
  Thioredoxin_9  49 tedwCgDaavnvPvlakia.elnpnievkillrdenlelmdqyltngaraiPtliildeegeelgvwgerPae 120
                     ++wC+ ++++   la++a e  +++ +  l  den+ + + y+     + Ptl+++ ++  +  + g rP+ 
     KIR64840.1  34 WAEWCPPCVAVSRSLAELAvEFGDRLRIVTLNTDENPATTRAYQV---MSMPTLLVFRDGEVVGSTVGARPKS 103
                    578**************9988999*******************76...99*******8887777899999985 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.3e-05     0.087       8      49 ..      36      79 ..      33     103 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.3e-05
                TT-HHHHHHHHHHHHHCCCTT..EEEEEEETTT-CCCHCCCCTT CS
      DUF836  8 pgChlCeqakekLkelkleeg..leleviDIakdeeleakYgle 49
                + C+ C  ++  L+el++e g  l++++ + ++++   ++Y+++
  KIR64840.1 36 EWCPPCVAVSRSLAELAVEFGdrLRIVTLNTDENPATTRAYQVM 79
                56*************88888877999***************986 PP

>> Phosducin  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.4e-05       0.1     149     215 ..      29      97 ..      24     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.4e-05
                 EEEEEE-TTSTTHHHHHHHHHHHHHH-T.TSEEEEEEHHHH--TTS.S-TTT-SEEEEEETTEEEEEET CS
   Phosducin 149 ivvhiyedgvkgtealnssliclaaeyp.tvkfckvkasvigasdr.fsrdvlpallvykagellsnfv 215
                 +vv  + +  + + a+  sl  la e+   +++  +++    a+ r +    +p+llv++ ge+++  v
  KIR64840.1  29 VVVDFWAEWCPPCVAVSRSLAELAVEFGdRLRIVTLNTDENPATTRaYQVMSMPTLLVFRDGEVVGSTV 97 
                 67888888899999************96368999999999999888467789*************9876 PP

>> DIM1  Mitosis protein DIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.2e-05       0.1      18      83 ..      24      89 ..      12     112 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.2e-05
                -SSSEEEEEEE-TT-HHHHHHHHHHHHHHHHTTTTEEEEEEETTT--TTSCCCTT-SSSEEEEEET CS
        DIM1 18 eeerlvviRFGrdedaeClklDelLakiaeklknfaviylvdidevpdfnkmyeledpvtilffyr 83
                  +r vv+ F  ++ + C+ +   La+ a +      i + ++de p  ++ y++ +  t+l+f  
  KIR64840.1 24 AADRPVVVDFWAEWCPPCVAVSRSLAELAVEFGDRLRIVTLNTDENPATTRAYQVMSMPTLLVFRD 89
                57899***************************************************9999999944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 833.49
//
Query:       KIR64841.1  [L=130]
Description: MerR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-19   68.2   0.0    8.9e-19   67.4   0.0    1.4  1  MerR_1         MerR HTH family regulatory protein
    1.2e-16   60.1   3.1    2.1e-16   59.4   3.1    1.4  1  MerR           MerR family regulatory protein
    7.6e-10   39.2   0.0    1.1e-09   38.6   0.0    1.3  1  MerR-DNA-bind  MerR, DNA binding


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   1.5e-22   8.9e-19       2      63 ..       2      63 ..       1      69 [. 0.96

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 1.5e-22
                EHHHHHHHHTS-HHHHHHHHHHTT-S-EE-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG-- CS
      MerR_1  2 sigevakilgvtthtlrywekegllkpkrteggrryYtdedierLklikyLlkrGltlkgik 63
                 ige+a+++g++t+tlry+e +gl++p r+ +g+r Y+++++++++ i++Ll  G+ l++i+
  KIR64841.1  2 LIGELAERAGTSTRTLRYYESQGLVRPRRSANGYRVYDEAELRVVHEIRALLAVGFGLDDIR 63
                59***********************************************************9 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   3.1   3.6e-20   2.1e-16       2      38 .]       3      38 ..       2      38 .. 0.99

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 3.6e-20
                HHHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSSEEE CS
        MerR  2 IgevAeltGvsprtLRyYEreGLipppeRtegGyRlY 38
                Ige+Ae++G s+rtLRyYE++GL+ +p+R+++GyR+Y
  KIR64841.1  3 IGELAERAGTSTRTLRYYESQGLV-RPRRSANGYRVY 38
                9***********************.***********9 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   1.9e-13   1.1e-09       4      63 ..      46     108 ..      43     110 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 1.9e-13
                    HHHHHHHHHTT--HHHHHHHH.HHHHS..TTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind   4 LkfIrrarrlGFsLdeIrelL.alydd..rappcqdvrallarklaeleeriaeLqalraeLa 63 
                    ++ Ir + ++GF Ld+Ir +   l+++  +++ c+d  a+l+rklae+++ +++L a+r++L 
     KIR64841.1  46 VHEIRALLAVGFGLDDIRPFVaCLRAGhaSGDVCPDSVAVLRRKLAEVDAYLDRLGAVRRQLH 108
                    677******************888888889*******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1093.18
//
Query:       KIR64842.1  [L=221]
Description: DeoR faimly transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-07   29.0   0.0    8.9e-07   28.7   0.0    1.1  1  DLH            Dienelactone hydrolase family
    4.8e-05   22.9   0.3       0.31   10.5   0.0    2.4  3  Peptidase_S9   Prolyl oligopeptidase family
    0.00027   20.3   0.2       0.17   11.1   0.0    2.6  3  Hydrolase_4    Serine aminopeptidase, S33
    0.00055   19.6   0.0    0.00085   19.0   0.0    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold
     0.0029   17.2   0.0     0.0049   16.5   0.0    1.4  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
     0.0034   17.3   0.0      0.012   15.6   0.0    1.7  2  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
  ------ inclusion threshold ------
      0.047   13.3   0.2       0.07   12.8   0.2    1.5  1  Esterase       Putative esterase
      0.086   12.6   0.0        7.6    6.3   0.0    2.1  2  Abhydrolase_2  Phospholipase/Carboxylesterase
       0.13   12.0   0.2        1.2    9.0   0.0    2.2  2  Beta_helix_2   Beta helix repeat of Inulin fructotransferase


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   4.5e-10   8.9e-07      78     206 ..      89     213 ..      66     218 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 4.5e-10
         DLH  78 vlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaev.pevdaavafYGlspekeleeaakikapilalfgeeDefipadevekleealkaanv 175
                 + d+l a v++++  p      vg+ G   G+a al+ aa   ++v a+v+  G +p+   ++ ++++ap l l+g+ De +   +    e+a+++ + 
  KIR64842.1  89 LADRLAAIVDWMAVEPTLARLPVGLFGASTGAAAALVAAAARpERVRAVVSRGG-RPDLAGIALPRVAAPTLLLVGGLDEQVISLN----EQAVAELGD 182
                 56888999****************************999988688888888877.*************************998775....899999999 PP

         DLH 176 dlelkvYpgagHaFandsresyneeaaedaw 206
                   el v pga+H F ++ + + ++ aa+d +
  KIR64842.1 183 VGELRVVPGATHLFEEPGALEQVADAAADWF 213
                 9****************99999999988755 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         4   7.9e+03      15      27 ..      31      43 ..      27      47 .. 0.75
   2 !   10.3   0.1   0.00017      0.34      49      98 ..      94     143 ..      88     151 .. 0.86
   3 !   10.5   0.0   0.00015      0.31     142     209 ..     154     217 ..     145     219 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4
                  -EEEEE--TTSST CS
  Peptidase_S9 15 yvvvvanirGsgg 27
                   vv++a++ Gs+ 
    KIR64842.1 31 GVVLFAHGSGSSR 43
                  5888899999876 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00017
                   HHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE- CS
  Peptidase_S9  49 iaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpv 98 
                    a+++++a e    +  ++++G+S G   +++a++ rp++ +a+v+  + 
    KIR64842.1  94 AAIVDWMAVEPTLARLPVGLFGASTGAAAALVAAAARPERVRAVVSRGGR 143
                   56788888888999999****************************98775 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00015
                   ---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHHHHHHHHHHHHHHHC CS
  Peptidase_S9 142 aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakveelarllaFlkeal 209
                   + +p+Ll++G +D++v ++  ++ va+L + g   +l++ p++ H + +p a  +     +++++ +l
    KIR64842.1 154 VAAPTLLLVGGLDEQV-ISLNEQAVAELGDVG---ELRVVPGATHLFEEPGALEQVADAAADWFATHL 217
                   5689************.777888888886655...79***************************9998 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.42   8.4e+02       4      33 ..      30      61 ..      27      68 .. 0.67
   2 !   11.1   0.0   8.4e-05      0.17      74     105 ..     107     138 ..      86     143 .. 0.81
   3 !    6.0   0.0    0.0031       6.2     188     232 ..     152     194 ..     148     199 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.42
  Hydrolase_4  4 kavvvlvHGlae..hsgryaelaeaLaaqGfa 33
                  +vv+++HG ++  hs r   +a  L+ +   
   KIR64842.1 30 TGVVLFAHGSGSsrHSPRNTAVAGVLNGRALG 61
                 68999999987533777777777777666555 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 8.4e-05
  Hydrolase_4  74 pelplfllGhSmGGliallyllrypdkvagli 105
                   +lp+ l+G S+G++ al +++ +p++v++++
   KIR64842.1 107 ARLPVGLFGASTGAAAALVAAAARPERVRAVV 138
                  4559**********************999998 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0031
  Hydrolase_4 188 akitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyH 232
                  +++ +P+lll G+ D+ v  +  ++++++lg    +l++ pg+ H
   KIR64842.1 152 PRVAAPTLLLVGGLDEQVI-SLNEQAVAELGD-VGELRVVPGATH 194
                  67889**********9888.455677777774.89********99 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.3e-07   0.00085       3     110 ..      33     145 ..      31     169 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.3e-07
                    EEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHH......SHHHHHHHHHHH.HHHCTTSSEE.EEEETHHHHHHHHH CS
  Abhydrolase_1   3 lvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddy......gtasvaddldri.ldalgddklt.lvGhSmGGmialay 90 
                    +++ hG + s +++++ ++a  L+ +   ++l+Dl+ + + +   ++             + +a+++d+  ++++  + ++ l G S G + al +
     KIR64842.1  33 VLFAHGSGSSRHSPRNTAVAGVLNGRALGTVLVDLLTPEEDRVDARTAE--LrfdiglLADRLAAIVDWMaVEPTLARLPVgLFGASTGAAAALVA 126
                    5555555555555555555555555555555555555555555555544..1334444345689999966799999999999************** PP

                    HHHHGGGEEEEEEESECSSC CS
  Abhydrolase_1  91 aaeyperVkalvllgaidpa 110
                    aa  perV+a+v+ g+  p 
     KIR64842.1 127 AAARPERVRAVVSRGG-RPD 145
                    *************999.443 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.4e-06    0.0049      87     138 ..      94     146 ..      90     180 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.4e-06
                    HHHHHHHHHC.TTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEEECE-S-T CS
  Peptidase_S15  87 advidWlakq.pwsnGkVgmtGiSYlGttqllaaatgvpalkaivpeaaisdl 138
                    a+++dW+a + + +   Vg +G S ++  +l+aaa ++++++a+v+  +  dl
     KIR64842.1  94 AAIVDWMAVEpTLARLPVGLFGASTGAAAALVAAAARPERVRAVVSRGGRPDL 146
                    799*******8888899***************************997766665 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.9e-06     0.012       9      52 ..      96     140 ..      93     144 .. 0.92
   2 ?   -1.3   0.0      0.86   1.7e+03     111     166 ..     151     199 ..     145     201 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.9e-06
                 HHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS.SEEEEEEE CS
      BAAT_C   9 ainyllrhpkvkkdkigllGiSkGgelalllasflk.kisavvli 52 
                 +++++  +p++++  +gl G S G+  al+ a+  +  ++avv+ 
  KIR64842.1  96 IVDWMAVEPTLARLPVGLFGASTGAAAALVAAAARPeRVRAVVSR 140
                 689****************************9999989****985 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.86
                 GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT--.--EEEEETTB-S---ST CS
      BAAT_C 111 vekakgpillvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGHliepP 166
                 + +  +p ll+vg  D+ + S   +e+a++ L   g   e++++  p+a Hl+e P
  KIR64842.1 151 LPRVAAPTLLLVGGLDEQVISL--NEQAVAELGDVG---ELRVV--PGATHLFEEP 199
                 5566677777777777666653..334555554444...34677..7777777777 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   3.5e-05      0.07     116     145 ..     109     139 ..      19     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.5e-05
                 C.EEEEEETHHHHHHHHHHHCSTTTCCEEEE CS
    Esterase 116 g.ravaGqSmGGlgALilalkhpdrFgsvss 145
                     ++G+S G+ +AL++a+ +p+r   v s
  KIR64842.1 109 LpVGLFGASTGAAAALVAAAARPERVRAVVS 139
                 25789********************999887 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.014        27      13      31 ..      29      47 ..      25      56 .. 0.84
   2 ?    6.3   0.0    0.0038       7.6     107     140 ..     111     144 ..      89     189 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.014
                   --EEEEEE--TT--SHHHH CS
  Abhydrolase_2 13 aqavviflHGlGdsghawa 31
                   a+ vv+f HG G+s h+  
     KIR64842.1 29 ATGVVLFAHGSGSSRHSPR 47
                   6789**********99855 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0038
                    EEEEEETHHHHHHHHHHHT-SS--SEEEEES--- CS
  Abhydrolase_2 107 iiigGFSqGaalalylaltlpkklggivafsgal 140
                    + ++G S Gaa al +a + p++++ +v+ +g+ 
     KIR64842.1 111 VGLFGASTGAAAALVAAAARPERVRAVVSRGGRP 144
                    6689*************************99975 PP

>> Beta_helix_2  Beta helix repeat of Inulin fructotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.27   5.4e+02       8      25 ..      20      37 ..      12      51 .. 0.77
   2 ?    9.0   0.0   0.00059       1.2       2      27 ..     151     176 ..     150     190 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.27
  Beta_helix_2  8 PTivLvasGasNviatnh 25
                  P  vLv +Ga  v+   h
    KIR64842.1 20 PADVLVPAGATGVVLFAH 37
                  777888888888876665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00059
  Beta_helix_2   2 vPsgatPTivLvasGasNviatnhvv 27 
                    P  a PT+ Lv + ++ vi+ n+ +
    KIR64842.1 151 LPRVAAPTLLLVGGLDEQVISLNEQA 176
                   5999*****************99753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1647.87
//
Query:       KIR64843.1  [L=61]
Description: hypothetical protein TK50_04410 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-18   64.3  10.4    1.1e-17   64.0  10.4    1.2  1  MT0933_antitox  MT0933-like antitoxin protein


Domain annotation for each model (and alignments):
>> MT0933_antitox  MT0933-like antitoxin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0  10.4   6.3e-22   1.1e-17       1      48 [.       5      52 ..       5      54 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 6.3e-22
  MT0933_antitox  1 fDKakdlaekhedkvdqgiDKAgdavddktGgKysdkIdkgqdaakda 48
                    +DKakd+a+kh+ +vdqgi+K gd++d++ GgKy+ +Idkg d a+ +
      KIR64843.1  5 MDKAKDFADKHDKQVDQGIEKTGDMADQRSGGKYDKQIDKGVDMAQRR 52
                    8******************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 486.33
//
Query:       KIR64844.1  [L=80]
Description: cytochrome P450 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-09   37.6   0.0    3.5e-09   37.1   0.0    1.3  1  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I
    4.5e-08   33.7   0.4    1.5e-07   32.0   0.4    1.7  1  Fer4_15   4Fe-4S single cluster domain
  ------ inclusion threshold ------
      0.025   14.4   0.6        1.7    8.6   0.1    2.2  2  Fer4      4Fe-4S binding domain
      0.053   13.6   0.0      0.091   12.9   0.0    1.4  1  Fer4_19   Divergent 4Fe-4S mono-cluster
      0.055   13.6   0.3       0.13   12.4   0.1    1.8  2  Fer4_2    4Fe-4S binding domain
       0.11   12.6   0.6        1.3    9.2   0.0    2.2  2  Fer4_6    4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   1.2e-12   3.5e-09       1      56 [.      14      65 ..      14      67 .. 0.92

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.2e-12
     Fer4_13  1 VDrdtCiacgaCvelaPdvFeeddeggasvvaeqptseeekadaeeAadaCPvesI 56
                VD  +Ci+ g+C+ +aP++F   d  g s+  ++++ ++  + + +Aad+CP+e+I
  KIR64844.1 14 VDPTRCIGSGICAGTAPKHFGLVD--GLSRPLAERVAPA--QAVLDAADSCPMEAI 65
                899********************8..5999999999886..5*************9 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.4     5e-11   1.5e-07       2      66 .]      13      67 ..      12      67 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 5e-11
     Fer4_15  2 vvDrdaCigcglCvaeapevfeldedglasvllddgeiaegevpddeeeaaqeAaraCPvdAIrv 66
                +vD ++Cig g C+  ap+ f l  dgl++ l+       ++v++   +a+ +Aa++CP +AI v
  KIR64844.1 13 HVDPTRCIGSGICAGTAPKHFGLV-DGLSRPLA-------ERVAP--AQAVLDAADSCPMEAILV 67
                59**********************.****9996.......45655..579*************87 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00056       1.7       2      15 ..      13      26 ..      12      27 .. 0.89
   2 ?    4.3   0.0     0.013        38      15      23 ..      57      65 ..      57      66 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00056
                EEETTTSSS-THHH CS
        Fer4  2 videekCigCGaCv 15
                 +d+ +Cig G+C+
  KIR64844.1 13 HVDPTRCIGSGICA 26
                59*******99997 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.013
                HHHSTTTEE CS
        Fer4 15 vevCPvgAI 23
                ++ CP +AI
  KIR64844.1 57 ADSCPMEAI 65
                578*****9 PP

>> Fer4_19  Divergent 4Fe-4S mono-cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     3e-05     0.091       6      56 ..      10      62 ..       6      70 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3e-05
     Fer4_19  6 itiednrelCihsgnCvkglpevFdpkrk...pwikpdeasteeiievverCPS 56
                 +++ ++  Ci+sg C  ++p+ F + +    p   ++ a ++ +  ++++CP 
  KIR64844.1 10 WRLHVDPTRCIGSGICAGTAPKHFGLVDGlsrPL-AERVAPAQAVLDAADSCPM 62
                578999****************998876411132.3444555667777888885 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   4.5e-05      0.13       1      17 [.      10      26 ..      10      29 .. 0.90
   2 ?   -1.6   0.0       1.2   3.7e+03      18      21 ..      58      61 ..      54      62 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.5e-05
      Fer4_2  1 apvvvdtdrCigCgaCv 17
                ++ +vd+ rCig g+C 
  KIR64844.1 10 WRLHVDPTRCIGSGICA 26
                689*************6 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
      Fer4_2 18 saCP 21
                ++CP
  KIR64844.1 58 DSCP 61
                4687 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00043       1.3       3      16 ..      13      26 ..      12      27 .. 0.91
   2 ?    1.4   0.1      0.13   3.8e+02      18      24 .]      59      65 ..      57      65 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00043
      Fer4_6  3 eidpdkCigCgdCv 16
                ++dp +Cig g C+
  KIR64844.1 13 HVDPTRCIGSGICA 26
                79*******99995 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.13
      Fer4_6 18 vCPegai 24
                 CP+ ai
  KIR64844.1 59 SCPMEAI 65
                6**9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 634.48
//
Query:       KIR64845.1  [L=110]
Description: hypothetical protein TK50_04435 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-05   23.6   8.4    3.3e-05   23.6   8.4    2.5  3  DUF1232   Protein of unknown function (DUF1232)
  ------ inclusion threshold ------
      0.048   13.5   7.3      0.061   13.2   5.5    2.0  2  DUF2970   Protein of unknown function (DUF2970)


Domain annotation for each model (and alignments):
>> DUF1232  Protein of unknown function (DUF1232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3       0.3   2.7e+03       1      10 [.       5      14 ..       5      14 .. 0.80
   2 !   23.6   8.4   3.7e-09   3.3e-05       2      36 ..      44      74 ..      44      75 .. 0.94
   3 !    3.0   0.7    0.0099        89       2      12 ..      70      80 ..      69      80 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.3
     DUF1232  1 aklliagala 10
                ++ll++++l+
  KIR64845.1  5 TWLLVVAGLV 14
                6899999986 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 3.7e-09
     DUF1232  2 klliagalaYlisPiDlIPDfiPvlGflDDlavlt 36
                k++++galaY i PiD++PD i    +lDD++vl+
  KIR64845.1 44 KVAFWGALAYTIFPIDVLPDPI----YLDDIGVLA 74
                799*****************88....9******97 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.0099
     DUF1232  2 klliagalaYl 12
                ++++a+al+Yl
  KIR64845.1 70 IGVLAAALLYL 80
                7899******8 PP

>> DUF2970  Protein of unknown function (DUF2970)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   5.5   6.8e-06     0.061      30      55 ..       5      30 ..       1      30 [. 0.92
   2 ?   -1.1   0.0       0.2   1.7e+03      37      45 ..      71      79 ..      70      93 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.8e-06
     DUF2970 30 plhviivGlilaalfvllLillVklV 55
                 + ++++Gl++aa +v++++l+V++V
  KIR64845.1  5 TWLLVVAGLVVAATLVGAVVLAVRVV 30
                6999********************98 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.2
     DUF2970 37 Glilaalfv 45
                G+++aal+ 
  KIR64845.1 71 GVLAAALLY 79
                666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 843.01
//
Query:       KIR64846.1  [L=372]
Description: hypothetical protein TK50_04440 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-36  122.5  23.4    2.9e-09   37.4   3.1    6.0  6  VCBS             Repeat domain in Vibrio, Colwellia, Bradyrhi
    2.5e-27   94.6  48.9    0.00014   21.9   3.0    7.6  7  FG-GAP           FG-GAP repeat
    1.6e-07   30.9  21.8      0.054   12.8   0.1    6.6  7  TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal reg
    0.00083   20.1   5.1       0.63   10.9   0.2    4.7  5  SGP              Sulphur globule protein
     0.0013   18.8   0.7         18    5.4   0.0    4.8  6  BBS2_Mid         Ciliary BBSome complex subunit 2, middle reg
  ------ inclusion threshold ------
      0.021   15.0  16.7        6.2    7.1   0.0    6.5  7  Dockerin_1       Dockerin type I domain
      0.041   13.3   1.2         44    3.4   0.0    4.4  6  BBS1             Ciliary BBSome complex subunit 1
        0.1   12.4  10.6        3.1    7.6   0.0    5.2  7  PliI             Periplasmic lysozyme inhibitor of I-type lys
        1.3    7.9   7.0         51    2.8   0.1    4.7  5  Itfg2            Integrin-alpha FG-GAP repeat-containing prot


Domain annotation for each model (and alignments):
>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   5.9e-08   0.00012      26      61 .]      15      49 ..      11      49 .. 0.79
   2 !   21.6   0.6   1.2e-07   0.00024      16      60 ..      60     105 ..      50     106 .. 0.79
   3 !   31.7   0.0   8.8e-11   1.8e-07       1      60 [.     139     201 ..     139     202 .. 0.82
   4 !   37.4   3.1   1.5e-12   2.9e-09       1      60 [.     191     255 ..     191     256 .. 0.88
   5 !   16.8   0.3   3.8e-06    0.0075      15      61 .]     264     308 ..     258     308 .. 0.70
   6 !   32.2   3.3     6e-11   1.2e-07       1      60 [.     297     359 ..     297     360 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 5.9e-08
        VCBS 26 dGtftdvtktslggsgggtgvavgDlDgDGdlDllv 61
                +Gtf ++ ++  +gs + ++vav+D+ gDG++D++v
  KIR64846.1 15 SGTFAPP-QYLASGSTATNAVAVADVTGDGRPDIVV 49
                5777654.466666777889**************98 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 1.2e-07
        VCBS  16 gglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 +++ ++ +++d ++  +t +  +g ++  + +av+D+DgDG++D++
  KIR64846.1  60 SSVLLFAQRADHSYGAPTRIVAHGgYNSDVRLAVADIDGDGRTDVA 105
                 5678899999999998888866663666668*************97 PP

  == domain 3  score: 31.7 bits;  conditional E-value: 8.8e-11
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslgg...sgggtgvavgDlDgDGdlDll 60 
                 D+  DGr+Dlvv+  +g +r+  ++++G f  v +t  g+   +  g  v ++Dl+gD +lD++
  KIR64846.1 139 DVTEDGRPDLVVSArPGEVRIHAQTATGAFP-VHSTVTGPylaGAPGEQVFAADLNGDARLDVA 201
                 8999*********869*************95.55555555353444457*************85 PP

  == domain 4  score: 37.4 bits;  conditional E-value: 1.5e-12
        VCBS   1 DldgDGrlDlvvandgglrvyrnngdGtftdvtktslggsgggtg.....vavgDlDgDGdlDll 60 
                 Dl+gD rlD+  ++++g++v + + dG+f ++t++  +++g+g+      +avgD+ gDG++Dl+
  KIR64846.1 191 DLNGDARLDVAQFYRHGTWVRLRRVDGSFGPATTYRTPEDGNGYRrvsngAAVGDVTGDGRADLV 255
                 9**********************************8888555553344559************98 PP

  == domain 5  score: 16.8 bits;  conditional E-value: 3.8e-06
        VCBS  15 dgglrvyrnngdGtftdvtktslggsgggtgvavgDlDgDGdlDllv 61 
                 d++++v+ + + G +   t++  ++++ + g+avgDl gDG+ Dl+v
  KIR64846.1 264 DSAVQVFTQGAGG-L-ATTPVRYPAYDIASGLAVGDLTGDGRNDLAV 308
                 5667777775443.2.234456666766779**************97 PP

  == domain 6  score: 32.2 bits;  conditional E-value: 6e-11
        VCBS   1 DldgDGrlDlvvandgg..lrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 Dl gDGr Dl v+ d+   + v +++ +Gt+   t++ ++g g ++ gva+gD+ gDG++D++
  KIR64846.1 297 DLTGDGRNDLAVTHDSWlaVSVHLQQPTGTLGGYTTNRVDGVGPQRdGVAIGDVTGDGKPDVV 359
                 99***********66552377788889999999999999997777779*************98 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   3.0   6.8e-08   0.00014       3      22 ..      32      51 ..      30      64 .. 0.79
   2 !   21.6   0.7   8.6e-08   0.00017       5      21 ..      91     107 ..      90     117 .. 0.87
   3 !   15.5   0.1   6.9e-06     0.014       5      24 ..     135     155 ..     132     168 .. 0.87
   4 !    7.2   0.1    0.0028       5.6       4      19 ..     186     201 ..     183     201 .. 0.84
   5 !   19.8   2.7   3.3e-07   0.00066       4      29 ..     240     261 ..     238     275 .. 0.73
   6 !   20.8   1.0   1.5e-07    0.0003       2      21 ..     290     309 ..     289     315 .. 0.91
   7 !   14.4   3.8   1.5e-05     0.031       4      22 ..     344     362 ..     343     367 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 6.8e-08
                SSEEEESTSSSSS-EEEEEE CS
      FG-GAP  3 yslavgDvNGDGyaDLavGA 22
                +++av+Dv GDG +D++vG 
  KIR64846.1 32 NAVAVADVTGDGRPDIVVGV 51
                689****************4 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 8.6e-08
                 EEEESTSSSSS-EEEEE CS
      FG-GAP   5 lavgDvNGDGyaDLavG 21 
                 lav+D++GDG +D+a+ 
  KIR64846.1  91 LAVADIDGDGRTDVALS 107
                 89*************98 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 6.9e-06
                 EEEESTSSSSS-EEEEEE.TT CS
      FG-GAP   5 lavgDvNGDGyaDLavGA.pe 24 
                 +a +Dv  DG +DL+v A p+
  KIR64846.1 135 VAIADVTEDGRPDLVVSArPG 155
                 899**************9754 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0028
                 SEEEESTSSSSS-EEE CS
      FG-GAP   4 slavgDvNGDGyaDLa 19 
                 ++ ++D+NGD   D+a
  KIR64846.1 186 QVFAADLNGDARLDVA 201
                 66799*****999997 PP

  == domain 5  score: 19.8 bits;  conditional E-value: 3.3e-07
                 SEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   4 slavgDvNGDGyaDLavGApeskgga 29 
                 ++avgDv GDG aDL++  ++    +
  KIR64846.1 240 GAAVGDVTGDGRADLVTSVSG----N 261
                 79***************9622....2 PP

  == domain 6  score: 20.8 bits;  conditional E-value: 1.5e-07
                 TSSEEEESTSSSSS-EEEEE CS
      FG-GAP   2 GyslavgDvNGDGyaDLavG 21 
                  ++lavgD+ GDG  DLav+
  KIR64846.1 290 ASGLAVGDLTGDGRNDLAVT 309
                 589****************8 PP

  == domain 7  score: 14.4 bits;  conditional E-value: 1.5e-05
                 SEEEESTSSSSS-EEEEEE CS
      FG-GAP   4 slavgDvNGDGyaDLavGA 22 
                 ++a gDv GDG++D++  A
  KIR64846.1 344 GVAIGDVTGDGKPDVVAVA 362
                 699*************985 PP

>> TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.3   0.00015       0.3       9      52 ..      20      55 ..       9      73 .. 0.72
   2 !   12.8   0.1   2.7e-05     0.054      18      52 ..      79     111 ..      66     128 .. 0.75
   3 ?   -0.2   0.0      0.28   5.6e+02      30      47 ..     134     151 ..     120     170 .. 0.73
   4 ?    2.6   0.0     0.039        78      27      45 ..     183     201 ..     159     215 .. 0.76
   5 !    8.3   0.3   0.00066       1.3      32      58 ..     242     269 ..     231     281 .. 0.81
   6 ?    3.4   0.1     0.021        42      27      56 ..     289     316 ..     276     332 .. 0.69
   7 ?    4.1   0.2     0.013        26      31      48 ..     345     361 ..     329     371 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
  TcdB_toxin_midN  9 pvdfkkpetirvgtstsvedtnlslaDldGdGladlvltipsag 52
                     p     p+ +    s+s +  ++ +aD+ GdG +d+v+ +   +
       KIR64846.1 20 P-----PQYLA---SGSTATNAVAVADVTGDGRPDIVVGVDAVD 55
                     3.....55444...5556667789************98776555 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.7e-05
  TcdB_toxin_midN  18 irvgtstsvedtnlslaDldGdGladlvltipsag 52 
                      i +   ++ +d+ l +aD+dGdG  d+  +++sag
       KIR64846.1  79 IVAHG-GYNSDVRLAVADIDGDGRTDV-ALSSSAG 111
                      44444.899*****************5.4455444 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.28
  TcdB_toxin_midN  30 nlslaDldGdGladlvlt 47 
                      ++ +aD+  dG +dlv+ 
       KIR64846.1 134 DVAIADVTEDGRPDLVVS 151
                      4589**********8764 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.039
  TcdB_toxin_midN  27 edtnlslaDldGdGladlv 45 
                      ++ ++ +aDl+Gd+ +d+ 
       KIR64846.1 183 PGEQVFAADLNGDARLDVA 201
                      4557889*********954 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.00066
  TcdB_toxin_midN  32 slaDldGdGladlvltipsag.tgavqk 58 
                       ++D+ GdG adlv+ +++     avq+
       KIR64846.1 242 AVGDVTGDGRADLVTSVSGNTpDSAVQV 269
                      689**************98775555555 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.021
  TcdB_toxin_midN  27 edtnlslaDldGdGladlvltipsagtgav 56 
                          l ++Dl GdG  dl +t  s    av
       KIR64846.1 289 IASGLAVGDLTGDGRNDLAVTHDSWL--AV 316
                      4556899**********766554433..33 PP

  == domain 7  score: 4.1 bits;  conditional E-value: 0.013
  TcdB_toxin_midN  31 lslaDldGdGladlvlti 48 
                      + ++D+ GdG++d+v  +
       KIR64846.1 345 VAIGDVTGDGKPDVVA-V 361
                      6899*********654.3 PP

>> SGP  Sulphur globule protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.6   3.2e+03      15      35 ..      31      51 ..      18      62 .. 0.73
   2 ?    4.4   0.0     0.034        67       9      38 ..      82     111 ..      68     121 .. 0.83
   3 !   10.9   0.2   0.00031      0.63       5      40 ..     228     263 ..     220     287 .. 0.78
   4 ?    2.4   0.0      0.14   2.8e+02       9      33 ..     284     308 ..     272     313 .. 0.84
   5 ?   -0.2   0.1      0.91   1.8e+03      15      30 ..     342     357 ..     319     361 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.6
         SGP 15 gagdglgdlfGdgsgdfnmnm 35
                ++   + d++Gdg  d+ +++
  KIR64846.1 31 TNAVAVADVTGDGRPDIVVGV 51
                4455889999**998887665 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.034
         SGP   9 gkgygngagdglgdlfGdgsgdfnmnmsgr 38 
                 + gy+++    + d+ Gdg  d+ ++ s++
  KIR64846.1  82 HGGYNSDVRLAVADIDGDGRTDVALSSSAG 111
                 789***9999*************9998775 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00031
         SGP   5 pwgegkgy.gngagdglgdlfGdgsgdfnmnmsgrgr 40 
                 p  +g+gy    +g+ +gd++Gdg +d+  ++sg++ 
  KIR64846.1 228 PE-DGNGYrRVSNGAAVGDVTGDGRADLVTSVSGNTP 263
                 43.389995556788*******************975 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.14
         SGP   9 gkgygngagdglgdlfGdgsgdfnm 33 
                  + y+   g  +gdl+Gdg  d+ +
  KIR64846.1 284 YPAYDIASGLAVGDLTGDGRNDLAV 308
                 57888899999********999876 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.91
         SGP  15 gagdglgdlfGdgsgd 30 
                 + g  +gd++Gdg+ d
  KIR64846.1 342 RDGVAIGDVTGDGKPD 357
                 3345789999999866 PP

>> BBS2_Mid  Ciliary BBSome complex subunit 2, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.014        28       1      21 [.      33      53 ..      33      72 .. 0.85
   2 ?    0.2   0.0      0.38   7.6e+02       2      19 ..      91     108 ..      86     118 .. 0.69
   3 !    5.4   0.0    0.0092        18       2      29 ..     135     162 ..     134     194 .. 0.87
   4 ?   -0.0   0.0      0.44   8.8e+02       3      28 ..     242     271 ..     241     275 .. 0.70
   5 ?    0.2   0.0      0.38   7.7e+02       2      20 ..     293     311 ..     292     317 .. 0.85
   6 ?   -3.2   0.0       4.3   8.7e+03       3      19 ..     346     362 ..     345     366 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.014
    BBS2_Mid  1 alaladvdgdgeneLvvgsdd 21
                a+a+adv+gdg+ ++vvg d 
  KIR64846.1 33 AVAVADVTGDGRPDIVVGVDA 53
                7899*************9875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.38
    BBS2_Mid   2 laladvdgdgeneLvvgs 19 
                 la+ad+dgdg++++  +s
  KIR64846.1  91 LAVADIDGDGRTDVALSS 108
                 567777777776655444 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0092
    BBS2_Mid   2 laladvdgdgeneLvvgsddfeirvfke 29 
                 +a+adv++dg+ +Lvv++   e+r+  +
  KIR64846.1 135 VAIADVTEDGRPDLVVSARPGEVRIHAQ 162
                 57999*************9999999765 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.44
    BBS2_Mid   3 aladvdgdgeneLvvg....sddfeirvfk 28 
                 a+ dv+gdg+++Lv +    + d  ++vf 
  KIR64846.1 242 AVGDVTGDGRADLVTSvsgnTPDSAVQVFT 271
                 577999999999997533335677777776 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.38
    BBS2_Mid   2 laladvdgdgeneLvvgsd 20 
                 la+ d++gdg+n+L v  d
  KIR64846.1 293 LAVGDLTGDGRNDLAVTHD 311
                 78999*******9998755 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 4.3
    BBS2_Mid   3 aladvdgdgeneLvvgs 19 
                 a+ dv+gdg+ ++v+ +
  KIR64846.1 346 AIGDVTGDGKPDVVAVA 362
                 67788888888877655 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0031       6.2      21      44 ..      23      44 ..      21      48 .. 0.87
   2 ?    6.0   0.1     0.007        14      25      46 ..      82     103 ..      50     105 .. 0.75
   3 ?    1.0   0.1      0.25     5e+02      35      44 ..     136     145 ..     129     148 .. 0.78
   4 ?    2.9   0.0     0.065   1.3e+02      31      45 ..     184     198 ..     178     203 .. 0.81
   5 ?    2.6   0.2     0.078   1.6e+02      35      45 ..     242     252 ..     231     255 .. 0.71
   6 ?   -0.9   0.1      0.97   1.9e+03      37      44 ..     296     303 ..     290     306 .. 0.68
   7 ?    0.9   0.1      0.27   5.4e+02       2       9 ..     348     355 ..     340     358 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0031
                HCTSSEBTTSCCCHGGGSTT-SSC CS
  Dockerin_1 21 ylnqregqssssngkaaDvNgDGr 44
                yl   +g+++++  + aDv+gDGr
  KIR64846.1 23 YLA--SGSTATNAVAVADVTGDGR 44
                677..89999999**********9 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.007
                 SEBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  25 regqssssngkaaDvNgDGrvn 46 
                 ++g +s+ + + aD++gDGr +
  KIR64846.1  82 HGGYNSDVRLAVADIDGDGRTD 103
                 667778889999*******976 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.25
                 GGGSTT-SSC CS
  Dockerin_1  35 kaaDvNgDGr 44 
                 + aDv++DGr
  KIR64846.1 136 AIADVTEDGR 145
                 6689999998 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.065
                 CCCHGGGSTT-SSCE CS
  Dockerin_1  31 ssngkaaDvNgDGrv 45 
                  ++  aaD+NgD r 
  KIR64846.1 184 GEQVFAADLNGDARL 198
                 567889******886 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.078
                 GGGSTT-SSCE CS
  Dockerin_1  35 kaaDvNgDGrv 45 
                 +  Dv+gDGr 
  KIR64846.1 242 AVGDVTGDGRA 252
                 55688888876 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 0.97
                 GSTT-SSC CS
  Dockerin_1  37 aDvNgDGr 44 
                  D++gDGr
  KIR64846.1 296 GDLTGDGR 303
                 57777776 PP

  == domain 7  score: 0.9 bits;  conditional E-value: 0.27
                 TETTSSSC CS
  Dockerin_1   2 gDVNgDgk 9  
                 gDV+gDgk
  KIR64846.1 348 GDVTGDGK 355
                 56666664 PP

>> BBS1  Ciliary BBSome complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.022        44      11      35 ..      26      50 ..      19      69 .. 0.82
   2 ?    1.4   0.0     0.087   1.7e+02     224     244 ..      74      94 ..      57      99 .. 0.85
   3 ?   -2.2   0.0       1.1   2.2e+03      19      35 ..     135     151 ..     131     157 .. 0.86
   4 ?    2.2   0.0      0.05     1e+02      15      49 ..     237     270 ..     230     275 .. 0.80
   5 ?   -0.2   0.0      0.27   5.3e+02      16      36 ..     290     310 ..     285     325 .. 0.83
   6 ?   -3.3   0.0       2.5   4.9e+03      18      36 ..     344     362 ..     341     367 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.022
        BBS1 11 elktlsscialaDlkgdgdvkLvva 35
                + +t ++ +a+aD++gdg   +vv+
  KIR64846.1 26 SGSTATNAVAVADVTGDGRPDIVVG 50
                557999****************997 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.087
        BBS1 224 svpvfisatGlfdvdyrivva 244
                 ++p+ i+a+G ++ d+r++va
  KIR64846.1  74 GAPTRIVAHGGYNSDVRLAVA 94 
                 789****************98 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.1
        BBS1  19 ialaDlkgdgdvkLvva 35 
                 +a+aD+++dg   Lvv 
  KIR64846.1 135 VAIADVTEDGRPDLVVS 151
                 6789*******999996 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.05
        BBS1  15 lsscialaDlkgdgdvkLvvadlgteeskkkLkvy 49 
                 +s++ a++D++gdg + Lv    g ++ ++ ++v+
  KIR64846.1 237 VSNGAAVGDVTGDGRADLVTSVSG-NTPDSAVQVF 270
                 689999************998777.5556666666 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.27
        BBS1  16 sscialaDlkgdgdvkLvvad 36 
                  s++a++Dl+gdg + L v++
  KIR64846.1 290 ASGLAVGDLTGDGRNDLAVTH 310
                 578999***********9986 PP

  == domain 6  score: -3.3 bits;  conditional E-value: 2.5
        BBS1  18 cialaDlkgdgdvkLvvad 36 
                 ++a++D++gdg+  +v + 
  KIR64846.1 344 GVAIGDVTGDGKPDVVAVA 362
                 6789999999998887765 PP

>> PliI  Periplasmic lysozyme inhibitor of I-type lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.013        25      61      79 ..      33      51 ..      24      59 .. 0.82
   2 ?    1.7   0.1       0.1     2e+02      51      77 ..      78     106 ..      56     113 .. 0.68
   3 ?    7.6   0.0    0.0015       3.1      57      80 ..     130     153 ..     114     157 .. 0.89
   4 ?   -2.5   0.0         2     4e+03      60      73 ..     185     198 ..     156     202 .. 0.74
   5 ?   -2.0   0.0       1.5   2.9e+03      64      79 ..     243     258 ..     236     270 .. 0.78
   6 ?   -1.5   0.0         1     2e+03      64      81 ..     295     312 ..     289     347 .. 0.72
   7 ?    0.4   0.1      0.26   5.1e+02      53      78 ..     340     361 ..     315     365 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.013
                EEEEE-SSSSSS-EEEEEE CS
        PliI 61 evkladvngdkkkelvvlk 79
                 v +adv gd+++++vv +
  KIR64846.1 33 AVAVADVTGDGRPDIVVGV 51
                4899************965 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.1
                 EEEEESSEEEE..EEEE-SSSSSS-EEEE CS
        PliI  51 lvlsRdGsvee..vkladvngdkkkelvv 77 
                 ++++  G   +  + +ad++gd++ ++  
  KIR64846.1  78 RIVAHGGYNSDvrLAVADIDGDGRTDVAL 106
                 56666777777335678******999754 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0015
                 SEEEEEEEE-SSSSSS-EEEEEEE CS
        PliI  57 Gsveevkladvngdkkkelvvlkr 80 
                 Gs  +v +adv  d++++lvv++r
  KIR64846.1 130 GSAGDVAIADVTEDGRPDLVVSAR 153
                 77889****************987 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 2
                 EEEEEE-SSSSSS- CS
        PliI  60 eevkladvngdkkk 73 
                 e+v  ad+ngd++ 
  KIR64846.1 185 EQVFAADLNGDARL 198
                 45777899999875 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 1.5
                 EE-SSSSSS-EEEEEE CS
        PliI  64 ladvngdkkkelvvlk 79 
                 + dv gd++ +lv ++
  KIR64846.1 243 VGDVTGDGRADLVTSV 258
                 6689999999998654 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 1
                 EE-SSSSSS-EEEEEEE- CS
        PliI  64 ladvngdkkkelvvlkrs 81 
                 + d+ gd++++l v++ s
  KIR64846.1 295 VGDLTGDGRNDLAVTHDS 312
                 567888888888887654 PP

  == domain 7  score: 0.4 bits;  conditional E-value: 0.26
                 EEESSEEEEEEEE-SSSSSS-EEEEE CS
        PliI  53 lsRdGsveevkladvngdkkkelvvl 78 
                   RdG    v + dv gd+k+++v +
  KIR64846.1 340 PQRDG----VAIGDVTGDGKPDVVAV 361
                 34444....67889999999999865 PP

>> Itfg2  Integrin-alpha FG-GAP repeat-containing protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.5     0.027        53      80      99 ..      32      51 ..      21     117 .. 0.62
   2 ?    0.7   0.0      0.11   2.2e+02      82     107 ..     135     160 ..     126     168 .. 0.74
   3 ?   -1.4   0.0      0.47   9.4e+02      84     100 ..     243     259 ..     238     272 .. 0.70
   4 ?   -1.6   0.0      0.52     1e+03      20      41 ..     293     313 ..     288     323 .. 0.61
   5 ?    2.8   0.1     0.026        51     262     277 ..     349     364 ..     343     369 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.027
       Itfg2 80 kvvliaDidgDgkvElvvgy 99
                ++v +aD+ gDg+ ++vvg 
  KIR64846.1 32 NAVAVADVTGDGRPDIVVGV 51
                44555555555555555553 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.11
       Itfg2  82 vliaDidgDgkvElvvgytDrvvray 107
                 v iaD+ +Dg+ +lvv+     vr +
  KIR64846.1 135 VAIADVTEDGRPDLVVSARPGEVRIH 160
                 67888889998888887766666655 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.47
       Itfg2  84 iaDidgDgkvElvvgyt 100
                 + D+ gDg+ +lv++ +
  KIR64846.1 243 VGDVTGDGRADLVTSVS 259
                 67888888888887654 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.52
       Itfg2  20 vavgdvcnkgknvvvalsaeGw 41 
                 +avgd++ +g+n + a++ + w
  KIR64846.1 293 LAVGDLTGDGRNDL-AVTHDSW 313
                 45666666666654.3445555 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.026
       Itfg2 262 DvtgdgreEvvaCaWD 277
                 Dvtgdg+ +vva a+D
  KIR64846.1 349 DVTGDGKPDVVAVAYD 364
                 8999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2713.22
//
Query:       KIR64847.1  [L=272]
Description: hypothetical protein TK50_04445 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.15   12.3   0.1       0.15   12.3   0.1    2.1  3  Inhibitor_I53  Thrombin inhibitor Madanin


Domain annotation for each model (and alignments):
>> Inhibitor_I53  Thrombin inhibitor Madanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   8.5e-06      0.15       4      72 ..      20      87 ..      18      91 .. 0.81
   2 ?   -2.6   0.1      0.37   6.6e+03      47      73 ..      98     123 ..      93     128 .. 0.60
   3 ?   -3.5   0.1      0.71   1.3e+04      28      36 ..     194     202 ..     187     213 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.5e-06
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------SS-------TTS----B CS
  Inhibitor_I53  4 faililavvasavvmayPerdsakdGnqekerallvkvqersdvdadydeydedgttptpdPtaptarP 72
                   +a+l+lavva a ++a P+   +  G + +e a++  + e ++ +     y ++ +t +   +a ++r 
     KIR64847.1 20 LALLVLAVVAVAGLVARPDLFRSVIGGRIREAAMPSLLEEAAE-ERAQRRYADEVATAAERAAATASRM 87
                   699****************99999999********99999999.5555678877777766655555554 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.37
                    XXX------SS-------TTS----B- CS
  Inhibitor_I53  47 vdadydeydedgttptpdPtaptarPr 73 
                    v+a +  y+  ++ +    +a ta Pr
     KIR64847.1  98 VEAAWQAYEAAEA-DVRRLAAATALPR 123
                    5666666666554.3344567777777 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 0.71
                    XXXXXXXXX CS
  Inhibitor_I53  28 dGnqekera 36 
                    +  qe+e+a
     KIR64847.1 194 EAAQEREQA 202
                    566777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1167  (0.0650901); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1927.23
//
Query:       KIR64848.1  [L=140]
Description: hypothetical protein TK50_04450 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0065   16.0  10.9     0.0081   15.7  10.9    1.1  1  FAP       Fibronectin-attachment protein (FAP)


Domain annotation for each model (and alignments):
>> FAP  Fibronectin-attachment protein (FAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7  10.9   4.5e-07    0.0081      14     103 ..      37     132 ..      24     139 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.5e-07
         FAP  14 lsktlaiaavagasavalalPavanadpePaPppPstaea....apaeaaaapaPaapapaPapadpnapeaaPapadPnapap...ppadPnapap 103
                 l++ + +  + g++a++   Pa+a++   P+ p+ +++      + a+a++ ++Paap + P  +d+  p +aP  + P a++p   p++dP a + 
  KIR64848.1  37 LTTLVLAVGLGGVAALTAGTPAMASTATGPTHPVVVASRVdslgPGATAEPRTDPAAPQARPVVGDARRPVPAP-VGRPVAAVPvdrPAVDPAAGTV 132
                 44444445578889999999999988766654444433321111445888899999999999999999998888.6888888775556788887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1055.12
//
Query:       KIR64849.1  [L=203]
Description: hypothetical protein TK50_04455 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-37  128.9   0.0    1.6e-37  128.7   0.0    1.1  1  Lipocalin_2  Lipocalin-like domain


Domain annotation for each model (and alignments):
>> Lipocalin_2  Lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.7   0.0   8.8e-42   1.6e-37       1     146 []      46     193 ..      46     193 .. 0.98

  Alignments for each domain:
  == domain 1  score: 128.7 bits;  conditional E-value: 8.8e-42
  Lipocalin_2   1 vdlerYlGkWyeiArlpmrfe.rgcvdvtaeYtlrddgtiaVenrcrevegklkeiegkAkvedeaseaklkVsFlkeflr.ievvkgdYwvlelddd 96 
                  vdl+rY G+Wy++A++p  fe ++ ++v+a+Y  ++dgt+ V+n+cr++ g  ++++g+A+ e++  ++ l VsFl++  r   +   +Y v+ ld d
   KIR64849.1  46 VDLQRYAGDWYQVAAIPAIFEiQCFKNVKARYDVQPDGTVGVRNTCRTILGTTSAVTGRARSENPPANSVLTVSFLEVGGRwLYFGGPNYLVMGLDVD 143
                  8********************9*******************************************************99999999999********** PP

  Lipocalin_2  97 yslalvgspsrkylwilsRtpqlseeqlekllekareqGydvskLirvaq 146
                  y++a+vg p+r+  ++lsR p+l  ++l ++ +  +++Gyd++ +++++q
   KIR64849.1 144 YRWAVVGDPDRRTGFVLSRGPALGGAELAEAKAVLTANGYDLCDFRTTRQ 193
                  *********************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1536.96
//
Query:       KIR64850.1  [L=755]
Description: hypothetical protein TK50_04460 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.8e-05   23.1   0.3    7.8e-05   23.1   0.3    4.9  7  FtsX         FtsX-like permease family
  ------ inclusion threshold ------
       0.41   10.6   0.0       0.41   10.6   0.0    3.6  3  DUF4574      Ubiquinol-cytochrome-c reductase complex assembl


Domain annotation for each model (and alignments):
>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       0.4   3.5e+03      30      43 ..      27      40 ..      21      55 .. 0.50
   2 ?    1.9   0.1     0.034     3e+02      62      83 ..     187     208 ..     141     213 .. 0.68
   3 !   23.1   0.3   8.7e-09   7.8e-05       3      91 ..     222     310 ..     220     314 .. 0.92
   4 ?   -3.0   0.0       1.2   1.1e+04      58      82 ..     354     378 ..     334     385 .. 0.60
   5 ?   -2.4   0.0      0.79   7.1e+03      32      56 ..     412     436 ..     408     454 .. 0.67
   6 ?   -4.9   1.7         2   1.8e+04      37      45 ..     637     645 ..     632     653 .. 0.36
   7 !   14.3   3.8   4.9e-06     0.044       2      93 ..     661     748 ..     660     750 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.4
        FtsX 30 lvalviGlglglla 43
                +++  iG++ +lla
  KIR64850.1 27 ALGVGIGVAMLLLA 40
                33333332222222 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.034
        FtsX  62 isidlitvliiivlllllalla 83 
                 + + ++ v++++vlll +++++
  KIR64850.1 187 PVLMVLVVVVVVVLLLPIVVFV 208
                 3333444444555555555555 PP

  == domain 3  score: 23.1 bits;  conditional E-value: 8.7e-09
        FtsX   3 eigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiski 91 
                  ++ lr lG+ ++ v+++  +e+++ ++++l++G +l ++  ql   v l   +  + ++   +  v++++v + +la+l++l++++++
  KIR64850.1 222 RLAALRLLGADTAMVRRIAAGEAAAGAVFGLAVGGVLFAAGRQLAPLVTLRDISVYASDLRPAPTLVAAVAVAVPVLAVLVALVALRRV 310
                 6789******************************8888888888888888888889999**************************9997 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 1.2
        FtsX  58 selkisidlitvliiivlllllall 82 
                 + +++++   +vl++++ +++l  l
  KIR64850.1 354 DTPDYQVAAGAVLLLVGTVTMLPWL 378
                 5566666666666666666666555 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 0.79
        FtsX  32 alviGlglgllaaqllsdvllssvf 56 
                 + v+  ++g++ +q+l +++++++ 
  KIR64850.1 412 SGVAVAVAGSIGLQMLVAGVEAQFT 436
                 4444455588888888877777654 PP

  == domain 6  score: -4.9 bits;  conditional E-value: 2
        FtsX  37 lglgllaaq 45 
                 +++ ll++ 
  KIR64850.1 637 VVVTLLLLG 645
                 222222222 PP

  == domain 7  score: 14.3 bits;  conditional E-value: 4.9e-06
        FtsX   2 reigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiskilk 93 
                 r +++l a+G  ++++ l +l+++++ +lv+l +++++gl +  +l  ++++     ++++ + ++  +++ +++ll++ ++ l +++++++
  KIR64850.1 661 RLLAMLAAVGTPRRTLGLSVLWQAAVPVLVGLGLAVAFGLGLGAVLLRMVGAP---VSMSWPVVGLGAALGGGVVLLVTGAS-LPALWRLTR 748
                 66799*************************************99999998887...56666666666666666655555444.667777776 PP

>> DUF4574  Ubiquinol-cytochrome-c reductase complex assembly factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.6e-05      0.41      10      61 ..      24      75 ..      20      80 .. 0.82
   2 ?   -2.0   1.3      0.39   3.5e+03       6      28 ..     688     710 ..     684     716 .. 0.77
   3 ?   -1.8   3.9      0.34   3.1e+03      12      29 ..     719     736 ..     709     743 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.6e-05
     DUF4574 10 vvallgaGaGlGsaLfvLvtPgeerkqeilkempeqdpqrrdeaakkkaLvl 61
                ++  lg+G G+ + L++   Pg+   +++ +e+++ +  r + +a  + L++
  KIR64850.1 24 ALTALGVGIGVAMLLLAAAVPGALDARAVRNEARNDTGWRPEKVAAANTLLV 75
                55677888888888888899**************999999998888888775 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.39
     DUF4574   6 kvlsvvallgaGaGlGsaLfvLv 28 
                  ++   + +++G GlG +L+ +v
  KIR64850.1 688 VLVGLGLAVAFGLGLGAVLLRMV 710
                 55666778899999999998766 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.34
     DUF4574  12 allgaGaGlGsaLfvLvt 29 
                  ++g Ga lG ++ +Lvt
  KIR64850.1 719 PVVGLGAALGGGVVLLVT 736
                 589*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 5378.23
//
Query:       KIR64851.1  [L=174]
Description: PadR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-15   56.7   0.0    2.6e-15   56.1   0.0    1.3  1  PadR             Transcriptional regulator PadR-like family
     0.0031   18.2   3.2     0.0059   17.3   2.7    1.7  2  Vir_act_alpha_C  Virulence activator alpha C-term
  ------ inclusion threshold ------
      0.015   15.2   0.0      0.095   12.6   0.0    2.1  2  TrmB             Sugar-specific transcriptional regulator Trm
       0.78    9.8   3.8        5.9    7.0   0.3    2.8  3  DUF2384          Protein of unknown function (DUF2384)


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   5.9e-19   2.6e-15       2      72 ..       8      78 ..       7      81 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 5.9e-19
                HHHHCCS-EEHHHHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHH CS
        PadR  2 LalleeqpsyGyeiikeleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrre 72
                L+lle +p++Gy+++++ +e+++ ++ l+ G++Y +L+rL ++glve   +e+gegp rk Y++T+aG + 
  KIR64851.1  8 LGLLESSPRHGYDLKRAYDERFGQARPLHFGQVYATLSRLLRNGLVEVDSVEAGEGPDRKRYAITEAGVTD 78
                899*****************************************************************765 PP

>> Vir_act_alpha_C  Virulence activator alpha C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.1   4.9e+03      45      65 ..      56      82 ..      34      84 .. 0.58
   2 !   17.3   2.7   1.3e-06    0.0059      17      76 ..     108     165 ..     101     166 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.1
  Vir_act_alpha_C 45 l......eeargqylvLrrgiryeeaw 65
                     +      +++r +y + ++g+   + w
       KIR64851.1 56 DsveageGPDRKRYAITEAGVTDVRRW 82
                     033333355777777777777666655 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.3e-06
  Vir_act_alpha_C  17 pealieeLerrreeheekLaeyeeieerleeargqylvLrrgiryeeawieWcdealelL 76 
                         ++++L  +r+eh + ++e+++++++   ++  +l++++++ + ea ++W++ + ++L
       KIR64851.1 108 GRSAADLLDTQRAEHLRLMRELTRRRDS--GDLAERLICDHALFHLEADLRWLELTAARL 165
                      5678999****************66555..5***********************999988 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.32   1.4e+03      12      31 ..       5      24 ..       5      28 .. 0.84
   2 ?   12.6   0.0   2.1e-05     0.095      38      63 ..      39      70 ..      31      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.32
                CHCHHHHHHCCCHHCHHCCC CS
        TrmB 12 kvYlaLlklgpatadeiaee 31
                +++l Ll++ p   +++ ++
  KIR64851.1  5 QTFLGLLESSPRHGYDLKRA 24
                578999**999999998765 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.1e-05
                CHHHHHHHHHHCTSEEEESST......TTEEE CS
        TrmB 38 kvYevLrsLedkGlVerekgr......pklYr 63
                +vY +L++L++ GlVe+   +      +k+Y 
  KIR64851.1 39 QVYATLSRLLRNGLVEVDSVEagegpdRKRYA 70
                7***************9987777777766776 PP

>> DUF2384  Protein of unknown function (DUF2384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.022        98      34      47 ..      72      85 ..      68      88 .. 0.61
   2 ?    7.0   0.3    0.0013       5.9      23      48 ..     106     133 ..     103     136 .. 0.77
   3 ?   -3.3   0.1       2.2   9.9e+03      13      17 ..     155     159 ..     148     166 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.022
     DUF2384 34 teaGarlVedyLdr 47
                teaG   V+++L +
  KIR64851.1 72 TEAGVTDVRRWLSQ 85
                56666666666643 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0013
     DUF2384  23 LggrtPldlldt..eaGarlVedyLdri 48 
                 L gr+++dlldt   + +rl +++  r 
  KIR64851.1 106 LTGRSAADLLDTqrAEHLRLMRELTRRR 133
                 88**********9888888877765555 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.2
     DUF2384  13 arWLr 17 
                  rWL+
  KIR64851.1 155 LRWLE 159
                 57886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1345.05
//
Query:       KIR64852.1  [L=403]
Description: hypothetical protein TK50_04475 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-08   33.2   1.4    9.9e-08   32.1   0.2    1.9  2  WXG100         Proteins of 100 residues with WXG
     0.0076   16.4   0.0      0.014   15.5   0.0    1.5  1  PPE            PPE family
  ------ inclusion threshold ------
      0.051   13.0   0.1      0.071   12.6   0.1    1.3  1  Peptidase_M75  Imelysin


Domain annotation for each model (and alignments):
>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.2   1.7e-11   9.9e-08       5      84 ..      24     103 ..      22     105 .. 0.96
   2 ?   -0.7   0.1       0.3   1.8e+03      20      41 ..     147     168 ..     144     169 .. 0.78

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1.7e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100   5 dpeelrqaaarfqkqaeeledelqrlkaevdalqsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaanafeda 84 
                 dpe+++  a++ ++ +++l d+ ++l+a++++l++gW G+a+ +fq     +    ++l ++++++++ l+  a+ ++ a
  KIR64852.1  24 DPEQIDGLASSWSSMKGTLDDLARDLRADLEKLANGWTGDAGREFQRRVSLIVDYSTTLSEGMADVRQGLTLMATDLRAA 103
                 8*********************************************************************9999988865 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHHHHHHCGCGC CS
      WXG100  20 aeeledelqrlkaevdalqsgW 41 
                 ++e e +++r+ + v++l++g+
  KIR64852.1 147 KAEQEKAHRRMVQVVAELAAGY 168
                 6778888999999999998775 PP

>> PPE  PPE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.4e-06     0.014      24     122 ..      32     129 ..      21     166 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.4e-06
                 HHHHHHHHHHHHHHHHHHHHHHTTTT.TTS-SHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHT-TT CS
         PPE  24 aaaWdgLaaelasaaaelesvlaelaaeaWqGpssaamaaaaapylaWLsaaaaqaeeaAaqaeaaaaaYeaAlaamvppaeiaanraelaalvatnff 122
                 a+ W+++  +l++ a+ l++ l++la + W+G + +++ +++   +++ ++ ++ ++++ + ++ +a+   aA  +  +pae     +++  +++  + 
  KIR64852.1  32 ASSWSSMKGTLDDLARDLRADLEKLA-NGWTGDAGREFQRRVSLIVDYSTTLSEGMADVRQGLTLMATDLRAAQKQAESPAETDDHDKTVSGAITGGLT 129
                 789***********************.**********************************************99999999876666666555555555 PP

>> Peptidase_M75  Imelysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.2e-05     0.071     124     197 ..      38     103 ..      10     166 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.2e-05
                    .HHHHHHHHHHHHHHHHHHHHHHHT...CHHHHHCCHSHHHHHHHHHCCHHHHHHHHHHCTTHHHHTSCHHCHS CS
  Peptidase_M75 124 yleylkavaallvsdlqelaaawqpetegnyraaltasekealeeilngmgslldelaserikvplsapdpede 197
                    +   l ++a++l++dl++la+ w+    g++ ++++      ++ i++   +l + +a+ r +  l+a d + +
     KIR64852.1  38 MKGTLDDLARDLRADLEKLANGWT----GDAGREFQR----RVSLIVDYSTTLSEGMADVRQGLTLMATDLRAA 103
                    4667999*****************....666788886....777888888888888887777777744443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2690.52
//
Query:       KIR64853.1  [L=122]
Description: hypothetical protein TK50_04480 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.013   14.2   2.0      0.015   13.9   2.0    1.0  1  DUF3138        Protein of unknown function (DUF3138)
      0.061   13.5   3.4        1.1    9.5   1.1    2.1  2  Acyl-CoA_dh_C  Acetyl-CoA dehydrogenase C-terminal like
      0.094   12.4   0.2        0.2   11.3   0.0    1.5  2  TEX13          Testis-expressed sequence 13 protein family


Domain annotation for each model (and alignments):
>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.0   2.6e-06     0.015      14      81 ..      44     110 ..      31     118 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.6e-06
     DUF3138  14 ldglaaaaatadrikalkaqltalqrqvkelraalaaakaaaGgkissqka..aaaaaaaaeaaaalted 81 
                 l ++a a ++a r  al+   t+  ++v  lr a+ aa++a+G+ +++ ++  a  aa+aa+ aaalt  
  KIR64853.1  44 LGTFADATSNARRYSALQ---TSYAQRVGRLRDAVRAAQSATGTILTNYRTteARNAANAADIAAALTGV 110
                 456677777777777776...567789****************988877662244577788999999853 PP

>> Acyl-CoA_dh_C  Acetyl-CoA dehydrogenase C-terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1    0.0035        21      13      48 ..      11      51 ..       2      61 .. 0.73
   2 ?    9.5   1.1   0.00018       1.1      13      52 ..      63     101 ..      43     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0035
  Acyl-CoA_dh_C 13 alkelaaaleaalealqeateallakaakgdp......eeal 48
                   +l+++ ++l+a l++ ++++++l ++++   p      ++a 
     KIR64853.1 11 SLEDFQRRLAARLTEAEAVLRKLTTELQCR-PpdlgtfADAT 51
                   79999*******************999984.42433334444 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00018
  Acyl-CoA_dh_C  13 alkelaaaleaalealqeateallakaakgdpeealaaav 52 
                    + ++ + +l++a+ a q+at+++l++ ++++ ++a+ +a 
     KIR64853.1  63 SYAQRVGRLRDAVRAAQSATGTILTNYRTTEARNAA-NAA 101
                    5788899********************996654444.433 PP

>> TEX13  Testis-expressed sequence 13 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.33     2e+03      89     106 ..      19      36 ..      10      42 .. 0.50
   2 ?   11.3   0.0   3.3e-05       0.2      81     133 ..      63     115 ..      42     121 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.33
       TEX13  89 LqdqveehksaaqaLase 106
                 L   ++e +++   L++e
  KIR64853.1  19 LAARLTEAEAVLRKLTTE 36 
                 333333333333333333 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 3.3e-05
       TEX13  81 lqarrvqkLqdqveehksaaqaLaselkrlreqqemerkeaasqlqlaqaala 133
                   a+rv +L+d v+  +sa+ ++ ++ ++ ++++  +  ++a+ l  + +al+
  KIR64853.1  63 SYAQRVGRLRDAVRAAQSATGTILTNYRTTEARNAANAADIAAALTGVDDALN 115
                 3478***************************9999999999999988877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 911.47
//
Query:       KIR64854.1  [L=397]
Description: hypothetical protein TK50_04490 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-15   57.5   6.2    1.3e-15   57.5   6.2    3.5  3  EccE        Putative type VII ESX secretion system translocon
  ------ inclusion threshold ------
       0.21   11.2   0.0       0.31   10.6   0.0    1.1  1  Spherulin4  Spherulation-specific family 4


Domain annotation for each model (and alignments):
>> EccE  Putative type VII ESX secretion system translocon, EccE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.1   8.4         2   1.8e+04      13      54 ..     100     141 ..      71     148 .. 0.70
   2 !   57.5   6.2   1.5e-19   1.3e-15       2      94 ..     207     298 ..     206     303 .. 0.89
   3 ?    0.1   0.4      0.11     1e+03      48      72 ..     364     388 ..     345     394 .. 0.56

  Alignments for each domain:
  == domain 1  score: -6.1 bits;  conditional E-value: 2
        EccE  13 ldpeenvaalsaRgggtegaaraaaaaarRlakaLreqGira 54 
                  +++  ++ ++a  gg +g ar+a++a +  + +L+e+G r 
  KIR64854.1 100 RRLRLRREEARAAAGGDTGEARLAVVAPELTMIELTERGTRL 141
                 333333333444478889999999999999999999998875 PP

  == domain 2  score: 57.5 bits;  conditional E-value: 1.5e-19
        EccE   2 aaqRttWlalrldpeenvaalsaRgggtegaaraaaaaarRlakaLreqGirarvleaeeldaalaalavglaaapadvreewrtirtrdgyl 94 
                 aa+Rt+W+a+rl +++++  +  Rgggt g++r++aaa  Rl kaL+ +G+  rvl  +el+aal   a     +++  +e+w+++r+++  +
  KIR64854.1 207 AAHRTVWVAVRLSVRDARTEAVTRGGGTLGVHRTVAAAVGRLGKALHAAGLGHRVLGRDELRAALVSGAGLDLTPEP-QAETWTGLRGGGWTQ 298
                 79*************************************************************99877665555555.7*******9987655 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.11
        EccE  48 reqGirarvleaeeldaalaalavg 72 
                 r++G  ar+l+ e  +aa aa+ ++
  KIR64854.1 364 RRAGAPARPLDGEHGPAAWAAAPTA 388
                 4556666666655555555554433 PP

>> Spherulin4  Spherulation-specific family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.5e-05      0.31      14      43 ..     309     341 ..     303     364 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.5e-05
                 T.THHHHHHHHH-..TTS-EEEEE-SSSSS-SS CS
  Spherulin4  14 a.Wdplfsaikan..pslefvvivNPgsGPgsa 43 
                 a W pl++a++a   ps +f ++v Pg  Pg+ 
  KIR64854.1 309 AtWGPLVDAVTATsaPSHTFAAVVRPGDRPGPP 341
                 35******9988777****************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2550.84
//
Query:       KIR64855.1  [L=465]
Description: secretion protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-26   91.9   2.8    4.5e-25   88.1   0.4    3.2  3  YukD      WXG100 protein secretion system (Wss), protein YukD


Domain annotation for each model (and alignments):
>> YukD  WXG100 protein secretion system (Wss), protein YukD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.4   2.5e-29   4.5e-25       2      75 ..      11      85 ..      10      86 .. 0.98
   2 ?    2.0   0.0     0.019   3.5e+02      27      57 ..      98     127 ..      92     135 .. 0.82
   3 ?   -1.3   0.0       0.2   3.7e+03      23      53 ..     152     185 ..     151     206 .. 0.68

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 2.5e-29
                EEEEEE-TTTEEEEEEETTSBTTHHHHHHHHHS-....--S---TT-EEEEGGGEEEETTSBCGGGT--TT-EEE CS
        YukD  2 vrVtvlagnrrvDlaLPadvpvaellpalvrllg.epddeagrpggwsLarvggapLsgdrtLaeagVrDGdlLv 75
                 rVt++a+++r+DlaLPadvp+a+llp l+r++g + +de++r+ggwsLar+gg+pL+g rt a++gVrDG++L+
  KIR64855.1 11 SRVTIVAPRTRMDLALPADVPLADLLPTLLRYAGeDLADEGVRHGGWSLARLGGQPLDGGRTAAQLGVRDGEVLY 85
                69********************************99*************************************97 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.019
                 HHHHHHHS-...--S---TT-EEEEGGG.EEE CS
        YukD  27 lpalvrllgepddeagrpggwsLarvgg.apL 57 
                  +++v++++  +++  rpg+w+ +++   a+L
  KIR64855.1  98 FDDVVDAVA--TATNQRPGSWQVSTTRSfAVL 127
                 689999**8..89999******9999887777 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.2
                 TTHHHHHHHHHS-......--S---TT-EEEEGG CS
        YukD  23 vaellpalvrllg...epddeagrpggwsLarvg 53 
                 +a+ll+a+  l+g    + ++++ ++g +La vg
  KIR64855.1 152 IAALLMAVALLVGaavLSRAAGDSRTGAVLALVG 185
                 5677777777777777555555666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.51
# Mc/sec: 2764.84
//
Query:       KIR64856.1  [L=1320]
Description: secretion protein EccC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-93  312.8   0.0    2.9e-52  177.4   0.0    4.9  6  FtsK_SpoIIIE     FtsK/SpoIIIE family
    2.4e-12   47.6   4.2     0.0012   19.2   0.0    4.2  4  AAA_16           AAA ATPase domain
      8e-10   38.9   0.0        0.2   11.6   0.0    4.5  3  NACHT            NACHT domain
    7.1e-09   36.1   0.0      0.012   15.9   0.0    3.7  3  AAA_22           AAA domain
    2.9e-06   27.6   0.5        0.3   11.2   0.3    3.2  3  DUF87            Helicase HerA, central domain
    3.5e-06   26.7   0.1      0.098   12.4   0.0    2.7  2  AAA_29           P-loop containing region of AAA domain
    3.7e-06   27.5   0.2          1    9.8   0.6    3.4  3  ABC_tran         ABC transporter
    9.9e-05   22.7   0.0       0.21   11.9   0.0    3.7  3  AAA_19           AAA domain
    0.00042   20.4   0.4       0.18   11.9   0.1    3.3  3  MMR_HSR1         50S ribosome-binding GTPase
    0.00045   20.4   0.0          2    8.6   0.0    3.0  2  AAA_33           AAA domain
    0.00099   19.1   0.0        8.2    6.3   0.0    3.2  3  ATPase_2         ATPase domain predominantly from Archaea
     0.0023   18.3   0.0         36    4.8   0.0    3.3  3  RNA_helicase     RNA helicase
     0.0026   17.4   3.2       0.35   10.4   0.0    3.6  3  AAA_25           AAA domain
     0.0035   16.2   0.0       0.75    8.5   0.0    2.3  2  Adeno_IVa2       Adenovirus IVa2 protein
     0.0047   17.5   0.0        4.6    7.7   0.0    3.2  3  AAA_23           AAA domain
  ------ inclusion threshold ------
      0.022   14.5   0.0        5.7    6.6   0.0    3.2  3  AAA_24           AAA domain
      0.028   13.3   0.1        1.8    7.4   0.0    3.0  3  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
      0.033   14.4   0.0         21    5.4   0.0    3.2  3  Roc              Ras of Complex, Roc, domain of DAPkinase
      0.036   13.1   0.2          4    6.4   0.0    2.2  2  T2SSE            Type II/IV secretion system protein
      0.073   12.4   0.2         15    4.9   0.1    2.7  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.088   12.1   0.1        7.4    5.8   0.0    3.1  3  Zeta_toxin       Zeta toxin
      0.089   12.5   0.1        5.7    6.6   0.0    2.8  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.096   12.5   0.0         21    4.8   0.0    3.0  3  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
       0.11   12.5   0.0         12    6.0   0.0    3.0  3  AAA_14           AAA domain
       0.13   10.8   0.2       0.26    9.8   0.2    1.4  1  DUF853           Bacterial protein of unknown function (DUF85
       0.14   12.7   0.1         27    5.3   0.0    3.0  3  AAA_18           AAA domain
       0.16   11.8   0.1        6.7    6.6   0.0    2.4  2  RsgA_GTPase      RsgA GTPase
       0.27   10.7   0.0         25    4.3   0.0    2.4  2  AAA_7            P-loop containing dynein motor region
       0.28   11.4   3.5        2.9    8.1   0.0    3.1  2  AAA_28           AAA domain
       0.35   10.0   0.9        7.8    5.6   0.0    2.3  2  DUF815           Protein of unknown function (DUF815)


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.5   2.1e+03      63     118 ..     234     290 ..     228     295 .. 0.73
   2 !   86.0   0.0   4.2e-27   2.5e-24       8     128 ..     436     562 ..     431     574 .. 0.91
   3 !   21.5   0.0   2.1e-07   0.00013     182     241 ..     573     627 ..     562     629 .. 0.91
   4 !  177.4   0.0   4.9e-55   2.9e-52      18     240 ..     805    1037 ..     794    1039 .. 0.93
   5 !   21.3   0.0   2.3e-07   0.00014      29      88 ..    1103    1161 ..    1083    1173 .. 0.89
   6 ?   -3.5   0.0         9   5.4e+03     148     184 ..    1210    1250 ..    1201    1252 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.5
                   HHTT--TTTEEEEEE-TTSS..SCGGGTT-TTBSS.S-B-SHHHHHHHHHHHHHHHHH CS
  FtsK_SpoIIIE  63 latthtPeeVqliliDykgv..elsalediphllsvavatdperalraleeLvkemee 118
                   lat h+P+++  ++++      +   ++ +ph  + +++td+  a+r++ + ++e ee
    KIR64856.1 234 LATFHAPDDLVVVVVAADDRqpAWDWVKWLPHAQH-PGRTDAAGARRLVFATLAEAEE 290
                   666677766666655554443466678889*****.*********9998887777766 PP

  == domain 2  score: 86.0 bits;  conditional E-value: 4.2e-27
                   SHHHHT---TTEEEEEEETTS-EEEEEGGGS-......SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS.SCGGGTT-TTBSS... CS
  FtsK_SpoIIIE   8 skkfrtessqlpvalgkeisgnplvldlkkma.....shllvaGatgsGKStalntLilSlatthtPeeVqliliDykgv.elsalediphlls..v 96 
                   +   ++++ ++p+ +g++  gn+++ld k++a     +h+lv+GatgsGKS+ l+t +++la+th+ ee++++l+D+kg+ ++++l+ +ph+ +  +
    KIR64856.1 436 RPRSHRDRLRIPLGVGPD--GNVVELDFKESAhegmgPHGLVIGATGSGKSELLRTVVAALAVTHSSEELNFVLVDFKGGaTFASLDALPHTSAviT 530
                   555677788888888888..************************************************************************99888 PP

                   S-B-SHHHHHHHHHHHHHHHHHHHHHHHHTT- CS
  FtsK_SpoIIIE  97 avatdperalraleeLvkemeeryalfreagv 128
                   +  ++   + r+ ++L  em++r++++r+ag 
    KIR64856.1 531 NLSDELPLVDRMRDALAGEMNRRQEVLRAAGN 562
                   99999***********************9985 PP

  == domain 3  score: 21.5 bits;  conditional E-value: 2.1e-07
                   -----B-----EEEEEEC-HHHHHHHHHHH....HHHHHHHHHHHCGGGTEEEEEEES-- CS
  FtsK_SpoIIIE 182 vtagrelekrpslvvivderieLrlaapkdssvlvedaivRlarkgraaglHlllatqrl 241
                    +ag  le+ psl+ i de+ eL  a+p+      +d++v ++r gr+ g+Hllla qrl
    KIR64856.1 573 RAAGEALEPMPSLLIICDEFSELLAAKPDF-----IDLFVMIGRLGRSLGVHLLLASQRL 627
                   57889999***************9999999.....***********************97 PP

  == domain 4  score: 177.4 bits;  conditional E-value: 4.9e-55
                    TEEEEEEETTS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSSCGGGTT-TTBSS.S-B-SHHHHHHHHHHH CS
  FtsK_SpoIIIE   18 lpvalgkeisgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgvelsalediphllsvavatdperalraleeL 112 
                    + v+++ e++++p++++l+++ ++++++Ga+ sGKSt l++L++Sla+thtP e q++++D++g++l++le++ph++ va++ d e ++r+++e+
    KIR64856.1  805 GVVDRPYEQRRDPMMVELAGAGGNVVIVGASLSGKSTLLRSLLASLALTHTPREAQFFCLDFGGGALRSLEGLPHTAGVAGRRDTEAVRRTVAEV 899 
                    6789999**************************************************************************************** PP

                    HHHHHHHHHHHHHTT-SSHHH..HHHHHHHHHHTT---B-TT-..........................-----------B-----EEEEEEC-H CS
  FtsK_SpoIIIE  113 vkemeeryalfreagvrsiaa..ydgeiaedpldifgdvflvlDnyddlaaene....ritsLsnqgpsygvhvlvtagrelekrpslvvivder 201 
                    v  ++er++ f+++g++s+aa   +  ++e ++d fgdvflv+D++++l++e e     it L+n+g+ +g+hv++ta r++e+r  l+++++  
    KIR64856.1  900 VGIIDEREQRFAQHGIDSVAAyrRRRAAGEFADDPFGDVFLVVDGWNTLRQEYEeleqTITNLANRGLGFGIHVVITAVRWAEIRINLRDLLGTK 994 
                    *********************666778899999*******************999**99************************************ PP

                    HHHHHHHHHH........HHHHHHHHHHHCGGGTEEEEEEES- CS
  FtsK_SpoIIIE  202 ieLrlaapkds....svlvedaivRlarkgraaglHlllatqr 240 
                    +eLrl ++++s    + ++  +++ ++r+  ++ lH+l a  r
    KIR64856.1  995 LELRLGDAAESeidrRAAQNVPEKTPGRGLTRDKLHFLAAVSR 1037
                    **********8888555566666667777889*****999877 PP

  == domain 5  score: 21.3 bits;  conditional E-value: 2.3e-07
                    -EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSSCGGGT CS
  FtsK_SpoIIIE   29 nplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgvelsale 88  
                     p+ ldl++ + hl v G  + GK++ l+++  +++ ++tP + +l++ Dy  + l+a+e
    KIR64856.1 1103 APVHLDLASEP-HLTVFGDAECGKTNLLRVIARGIVERYTPAQARLVIADYRRGLLGAVE 1161
                    68999******.***************************************999888876 PP

  == domain 6  score: -3.5 bits;  conditional E-value: 9
                    -B-TT-..........................--------- CS
  FtsK_SpoIIIE  148 dvflvlDnyddlaaene....ritsLsnqgpsygvhvlvta 184 
                    d+++++D+yd +a  +        +L  q    g h++vt+
    KIR64856.1 1210 DLYILVDDYDLVASGGSnplsALHELLPQARDIGLHLIVTR 1250
                    66777788887777666667666777777777777777764 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       4.9   2.9e+03     116     143 ..     283     321 ..     182     330 .. 0.63
   2 !   19.2   0.0     2e-06    0.0012      17     159 ..     463     607 ..     459     622 .. 0.75
   3 !   12.7   0.0    0.0002      0.12      21      51 ..     823     853 ..     819     962 .. 0.80
   4 !   13.8   0.1   9.6e-05     0.057      24     165 ..    1112    1243 ..    1100    1248 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 4.9
      AAA_16 116 a......srllellkrllallsrder.....p.lvlvlDd 143
                 a      ++l+++l+  +++++  ++     p lv+v+D 
  KIR64856.1 283 AtlaeaeESLADELAGRARFSPD-AKplttaPhLVVVIDG 321
                 03333346666666666655555.4445555348888886 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 2e-06
      AAA_16  17 ervrsgrpelvllsGesGvGKsslvrellralekd....ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpel 111
                 e++++g ++  l++G+ G+GKs l+r++  al  +    +   l+   ++++ +++++ l  +  ++ +++ l de    ++++ r++l ++++  +e+
  KIR64856.1 463 ESAHEGMGPHGLVIGATGSGKSELLRTVVAALAVThsseE---LNFVLVDFKGGATFASLDALPHTSAVITNLSDE--LPLVDRMRDALAGEMNRRQEV 556
                 46788999*********************97776633331...666666666667776655555566788888877..667999999999999966666 PP

      AAA_16 112 agaea...srllellkrll.allsrderplvlvlDdlqwadeaslqllaaLl 159
                  +a+    sr  ++ +r++ + l++  + l++++D++  + +a  +++++++
  KIR64856.1 557 LRAAGnyvSRYEYEKARAAgEALEP-MPSLLIICDEFSELLAAKPDFIDLFV 607
                 6666678899999999999666666.555*******9988888888777665 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 0.0002
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekd 51 
                 +g +++v+++G+s +GKs+l+r+ll +l  +
  KIR64856.1 823 AGAGGNVVIVGASLSGKSTLLRSLLASLALT 853
                 57789********************988755 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 9.6e-05
      AAA_16   24 pelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea..sr 118 
                  ++ + + G++ +GK+ l+r ++r + +++   + ++++          +a++  r +ll +++ e+  + ++  + + ++ +    ++++a++    
  KIR64856.1 1112 EPHLTVFGDAECGKTNLLRVIARGIVERY---TPAQARLV--------IADYR-R-GLLGAVEGEHLLDYAPSNQVFAQGLA----SIRSALSnrLP 1191
                  378889*****************999993...66666666........55555.4.77777777733333333333333322....34444441244 PP

      AAA_16  119 llellkrll.allsrderp.lvlvlDdlqwadeaslqllaaLlrlles....k 165 
                    ++ ++ l +++   + p l++++Dd + + ++  + l+aL +ll +    +
  KIR64856.1 1192 GPDVTTAQLrDRSWW-KGPdLYILVDDYDLVASGGSNPLSALHELLPQardiG 1243
                  568888888455555.5566*************99999999999987755333 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00033       0.2       4      38 ..     474     507 ..     473     605 .. 0.89
   2 !   10.9   0.0   0.00052      0.31       3     127 ..     829     977 ..     828    1015 .. 0.67
   3 !   10.0   0.0   0.00098      0.59       5     132 ..    1117    1255 ..    1114    1275 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00033
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEE CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpqgafklvF 38 
                 ++ G+ GsGK+ Ll+ ++ a+a  +  ++   +v+
  KIR64856.1 474 LVIGATGSGKSELLRTVVAALAVTHSSEE-LNFVL 507
                 589********************998875.46665 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00052
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-......-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE.............. CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna...rsladllfsqlpepaapvsevwavllelperlL.............. 84 
                 v++ G++ sGK+tLl++l   +a  + p++a   +F l ++    ++ +    +     +++  +  ++v ev+ ++ e+++r                
  KIR64856.1 829 VVIVGASLSGKSTLLRSLLASLALTHTPREA--QFFCLDFGGGALRSLEglpHTAGVAGRRDTEAVRRTVAEVVGIIDEREQRFAqhgidsvaayrrrr 925
                 78999************************86..444444444333333311212222223444444555555777777777777777777777777777 PP

                 ..............EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEE CS
       NACHT  85 ..............lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltv 127
                               l++Dg + l+++ ++     +++ +++l ++ l  + ++++t+
  KIR64856.1 926 aagefaddpfgdvfLVVDGWNTLRQEYEE-----LEQTITNLANRGLGFGIHVVITA 977
                 88888888888888888888888876655.....88888888888888888877775 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00098
                  EEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-........-HCHHHCCCCTS--SSS-C......CHHHHCCSCCCEE...... CS
       NACHT    5 lqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna.....rsladllfsqlpepaapvse......vwavllelperlL...... 84  
                  + G+a +GKT Ll+ +a+ + e++ p++a +lv+    r l    +      + + +++f+q++++++            +  ++l++r +      
  KIR64856.1 1117 VFGDAECGKTNLLRVIARGIVERYTPAQA-RLVIADYRRGLLGAVEGehlldYAPSNQVFAQGLASIRSALSnrlpgpD-VTTAQLRDRSWwkgpdl 1211
                  779999*********************97.8888766555544333345678888888888888877766665666541.22333333433577777 PP

                  .EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCH CS
       NACHT   85 .lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpral 132 
                   +++D++D +++  ++         L+el++++   + +l++t r +++
  KIR64856.1 1212 yILVDDYDLVASGGSN-----PLSALHELLPQARDIGLHLIVTRRVGGV 1255
                  7999999998886666.....7888888888887788888888777666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     2e-05     0.012       7      70 ..     472     534 ..     467     628 .. 0.63
   2 !    9.6   0.0    0.0017         1       6      38 ..     827     872 ..     822     982 .. 0.53
   3 ?    5.9   0.0     0.024        14       5      38 ..    1112    1161 ..    1109    1251 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl.lrellralglelka 70 
                 +++v+G +G+GK+ llr+++  l     +  e+  +v+v+ +++ + ++l +    +a+  +l++
  KIR64856.1 472 HGLVIGATGSGKSELLRTVVAALAV--THSSEELNFVLVDFKGGATFASLdALPHTSAVITNLSD 534
                 899*******************943..33336777777777777766666444444444443333 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0017
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.............e 38 
                 g +v++G s +GK+tllr ll +l     ++e             +
  KIR64856.1 827 GNVVIVGASLSGKSTLLRSLLASLALTHTPREaqffcldfgggalR 872
                 7899******************994332222233333333333331 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.024
      AAA_22    5 agilvvtGesGtGKTtllrrlleqldeeakaee................e 38  
                  + +l+v+G + +GKT llr +++  +e++ +++                e
  KIR64856.1 1112 EPHLTVFGDAECGKTNLLRVIARGIVERYTPAQarlviadyrrgllgavE 1161
                  5689*******************999999888877777774444444443 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.3    0.0005       0.3      24      61 ..     471     511 ..     464     531 .. 0.84
   2 ?    1.8   0.0      0.36   2.1e+02      28      48 ..     831     851 ..     829     862 .. 0.85
   3 !   10.4   0.0   0.00084       0.5      12      59 ..    1103    1151 ..    1091    1153 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0005
       DUF87  24 rHlAilgsTGsGKSntvavLleelle...kkgatililDpH 61 
                  H +++g TGsGKS + +  ++ l+    +  ++ +++D  
  KIR64856.1 471 PHGLVIGATGSGKSELLRTVVAALAVthsSEELNFVLVDFK 511
                 5999**************99999987666556677777765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.36
       DUF87  28 ilgsTGsGKSntvavLleell 48 
                 i+g + sGKS++ ++Ll++l+
  KIR64856.1 831 IVGASLSGKSTLLRSLLASLA 851
                 5666669***********997 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00084
       DUF87   12 vpvyldlnklvtrHlAilgsTGsGKSntvavLleelle...kkgatililD 59  
                   pv ldl  + + Hl ++g +  GK+n+ +v+ + ++e     +a+++i D
  KIR64856.1 1103 APVHLDL--ASEPHLTVFGDAECGKTNLLRVIARGIVErytPAQARLVIAD 1151
                  5788888..5589************************98865566777766 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00041      0.24      24      47 ..     472     495 ..     459     505 .. 0.76
   2 !   12.4   0.0   0.00016     0.098      21      43 ..     824     847 ..     814     858 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00041
      AAA_29  24 atlltGpsGsGKSTllDAiqalLv 47 
                   l++G++GsGKS ll  + a L 
  KIR64856.1 472 HGLVIGATGSGKSELLRTVVAALA 495
                 46***********99977766664 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00016
      AAA_29  21 lkg.atlltGpsGsGKSTllDAiq 43 
                  +g +++++G+s sGKSTll ++ 
  KIR64856.1 824 GAGgNVVIVGASLSGKSTLLRSLL 847
                 45569**************96655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.012       6.9      16      34 ..     475     493 ..     468     553 .. 0.89
   2 !    9.8   0.6    0.0017         1      10      33 ..     825     848 ..     822     855 .. 0.87
   3 ?    5.8   0.0      0.03        18       3      33 ..    1104    1134 ..    1102    1145 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.012
                 EEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  16 ivGenGaGKStLlkllagl 34 
                 ++G +G+GKS Ll+++   
  KIR64856.1 475 VIGATGSGKSELLRTVVAA 493
                 79***********998765 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0017
                 TTSEEEEEESTTSSHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllag 33 
                 +g  v+ivG + +GKStLl+ l+ 
  KIR64856.1 825 AGGNVVIVGASLSGKSTLLRSLLA 848
                 57889***************9976 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.03
                  EEEEEEETTSEEEEEESTTSSHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran    3 nvslklkegekvaivGenGaGKStLlkllag 33  
                   v+l+l     + ++G+  +GK+ Ll+++a+
  KIR64856.1 1104 PVHLDLASEPHLTVFGDAECGKTNLLRVIAR 1134
                  68899999999******************97 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00035      0.21      10      56 ..     470     516 ..     462     604 .. 0.71
   2 ?    3.9   0.0      0.11        63       9      59 ..     825     875 ..     818     961 .. 0.86
   3 ?    2.0   0.0       0.4   2.4e+02       9      43 ..    1111    1144 ..    1105    1155 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00035
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAak 56 
                  ++ lv++  G+GK+++l+++va l  +++ +  +++lv f g A+ 
  KIR64856.1 470 GPHGLVIGATGSGKSELLRTVVAALAVTHSSEELNFVLVDFKGGATF 516
                 56789***********************9999888888888877765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.11
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelr 59 
                 + +++++++   +GK+++l+  +a l  +++   +++ ++ f g A + l+
  KIR64856.1 825 AGGNVVIVGASLSGKSTLLRSLLASLALTHTPREAQFFCLDFGGGALRSLE 875
                 567899999999******************999999999999998888776 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.4
      AAA_19    9 kekvllvtaGpGtGKTrvlkhivallvelggvkpe 43  
                  +e++l v + + +GKT +l+ i + +ve+ +  ++
  KIR64856.1 1111 SEPHLTVFGDAECGKTNLLRVIARGIVERYTP-AQ 1144
                  6788999**************99999888743.33 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.051        31       3      24 ..     474     495 ..     472     507 .. 0.82
   2 !   11.9   0.1   0.00029      0.18       1      26 [.     828     853 ..     828     962 .. 0.89
   3 ?   -1.9   0.0       5.7   3.4e+03       3      22 ..    1116    1135 ..    1114    1144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.051
                 EEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgeka 24 
                 +++G + +GKS L+++ + + a
  KIR64856.1 474 LVIGATGSGKSELLRTVVAALA 495
                 589************9998744 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00029
                 EEEEEESTTSSHHHHHHHHHTSTEEE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaiv 26 
                 +v+ivG + +GKStL+++l+ + a +
  KIR64856.1 828 NVVIVGASLSGKSTLLRSLLASLALT 853
                 599****************9986644 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 5.7
                  EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1    3 aivGrpNvGKStLinaltge 22  
                   ++G    GK+ L++ + + 
  KIR64856.1 1116 TVFGDAECGKTNLLRVIARG 1135
                  6899999*******999875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0     0.004       2.4       3      27 ..     474     498 ..     474     575 .. 0.80
   2 !    8.6   0.0    0.0034         2       2      25 ..     829     852 ..     829     931 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.004
      AAA_33   3 llvGlpGsGKstlaerllkklgavl 27 
                 l++G+ GsGKs l++ ++++l++++
  KIR64856.1 474 LVIGATGSGKSELLRTVVAALAVTH 498
                 589***************9998666 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0034
      AAA_33   2 vllvGlpGsGKstlaerllkklga 25 
                 v++vG++ sGKstl+++ll+ l+ 
  KIR64856.1 829 VVIVGASLSGKSTLLRSLLASLAL 852
                 789***************998874 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.025        15      15      44 ..     465     494 ..     459     509 .. 0.79
   2 ?    3.1   0.0      0.13        75      23      48 ..     829     854 ..     822     915 .. 0.83
   3 ?    6.3   0.0     0.014       8.2      23      41 ..    1115    1133 ..    1106    1141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.025
    ATPase_2  15 lerepneiyfiYGpegsGKtaLlkeiienl 44 
                 + ++  +  ++ G  gsGK+ Ll+ ++  l
  KIR64856.1 465 AHEGMGPHGLVIGATGSGKSELLRTVVAAL 494
                 566666777899**************9887 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.13
    ATPase_2  23 yfiYGpegsGKtaLlkeiienledkd 48 
                 ++i G   sGK++Ll+ ++  l   +
  KIR64856.1 829 VVIVGASLSGKSTLLRSLLASLALTH 854
                 6899************9998885544 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.014
    ATPase_2   23 yfiYGpegsGKtaLlkeii 41  
                  + ++G   +GKt Ll+ i+
  KIR64856.1 1115 LTVFGDAECGKTNLLRVIA 1133
                  679*************986 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.061        36       3      25 ..     475     497 ..     474     512 .. 0.82
   2 ?    4.6   0.0     0.069        41       1      24 [.     829     852 ..     829     865 .. 0.81
   3 ?    4.7   0.0     0.066        39       2      26 ..    1116    1140 ..    1115    1156 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.061
  RNA_helicase   3 lyGpsgeGKStlakeLakallkk 25 
                   + G++g GKS l +++++al+ +
    KIR64856.1 475 VIGATGSGKSELLRTVVAALAVT 497
                   78*************99999844 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.069
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallk 24 
                   ++++G+s  GKStl ++L ++l+ 
    KIR64856.1 829 VVIVGASLSGKSTLLRSLLASLAL 852
                   6899*************9998874 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.066
  RNA_helicase    2 wlyGpsgeGKStlakeLakallkkl 26  
                     ++G++ +GK++l + +a+ + +++
    KIR64856.1 1116 TVFGDAECGKTNLLRVIARGIVERY 1140
                    589***************9998776 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3       1.6   9.6e+02      51     111 ..     224     288 ..     223     320 .. 0.58
   2 ?    4.8   0.0     0.032        19      36      81 ..     473     512 ..     467     566 .. 0.73
   3 !   10.4   0.0   0.00059      0.35      21      60 ..     814     853 ..     799     861 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.6
      AAA_25  51 ldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal.......rddarllvldlagv 111
                 ldla a+      ++  ap    V++v+a+d++     +++++ +a+       +  +rl + +la+ 
  KIR64856.1 224 LDLARATIGQLATFH--APDDLVVVVVAADDRQ-PAWDWVKWLPHAQhpgrtdaAGARRLVFATLAEA 288
                 566666664444444..5678889999999988.5556666554554555555444556666666554 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.032
      AAA_25  36 allaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEd 81 
                 +l++Ga+g+GK+ l+  +++a+a  +       +e  + ++v++ +
  KIR64856.1 473 GLVIGATGSGKSELLRTVVAALAVTH------SSEELNFVLVDFKG 512
                 799***********999999998433......23555666666555 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00059
      AAA_25  21 prrwlvkgllpagelallaGapgtGKttlaldlalavatG 60 
                 +r+  + +l  ag+ ++++Ga+ +GK+tl+ +l +++a+ 
  KIR64856.1 814 RRDPMMVELAGAGGNVVIVGASLSGKSTLLRSLLASLALT 853
                 34444559999*************************9943 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0013      0.75      90     119 ..     473     502 ..     463     509 .. 0.82
   2 ?    5.1   0.0     0.014       8.1      91     120 ..     830     859 ..     826     865 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0013
  Adeno_IVa2  90 GviyGPtGsGksqllrnlissklisPiPet 119
                 G++ G tGsGks+llr+++++  +    e 
  KIR64856.1 473 GLVIGATGSGKSELLRTVVAALAVTHSSEE 502
                 8999*************9988766666555 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.014
  Adeno_IVa2  91 viyGPtGsGksqllrnlissklisPiPetv 120
                 vi G   sGks llr+l++s  +  +P   
  KIR64856.1 830 VIVGASLSGKSTLLRSLLASLALTHTPREA 859
                 899***************998888888543 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.16        94      23      43 ..     474     494 ..     454     513 .. 0.81
   2 !    7.7   0.0    0.0077       4.6      20      47 ..     827     856 ..     809     912 .. 0.83
   3 ?    2.1   0.0      0.39   2.3e+02      14      41 ..    1106    1134 ..    1101    1154 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.16
      AAA_23  23 lItGpNGaGKTTildAiklaL 43 
                 l++G +G+GK+ +l+ +  aL
  KIR64856.1 474 LVIGATGSGKSELLRTVVAAL 494
                 789********9999887777 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0077
      AAA_23  20 gltlItGpNGaGKTTildAik..laLyget 47 
                 g ++I+G   +GK+T+l+ +   laL++ +
  KIR64856.1 827 GNVVIVGASLSGKSTLLRSLLasLALTHTP 856
                 6689**************998335666644 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.39
      AAA_23   14 eidF.skgltlItGpNGaGKTTildAikl 41  
                  ++d+ s +   ++G+ ++GKT +l+ i  
  KIR64856.1 1106 HLDLaSEPHLTVFGDAECGKTNLLRVIAR 1134
                  5667655666789***********99875 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.07        42       4      36 ..     472     515 ..     469     547 .. 0.78
   2 ?    6.6   0.0    0.0095       5.7       4      36 ..     828     871 ..     825     982 .. 0.82
   3 ?   -1.9   0.0       3.9   2.3e+03       5      20 ..    1115    1130 ..    1112    1137 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.07
      AAA_24   4 kiliyGpsgiGKTtlakel...........gpkplfidtekGlk 36 
                   l++G  g+GK+ l+++            + +++++d+ +G+ 
  KIR64856.1 472 HGLVIGATGSGKSELLRTVvaalavthsseELNFVLVDFKGGAT 515
                 6799**************97777777777777777778877765 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0095
      AAA_24   4 kiliyGpsgiGKTtlakel...........gpkplfidtekGlk 36 
                 +++i+G s +GK+tl+++l           + +++++d+ +G+ 
  KIR64856.1 828 NVVIVGASLSGKSTLLRSLlaslalthtprEAQFFCLDFGGGAL 871
                 699****************9999988887777888888888764 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.9
      AAA_24    5 iliyGpsgiGKTtlak 20  
                  + ++G+++ GKT l++
  KIR64856.1 1115 LTVFGDAECGKTNLLR 1130
                  689*********9876 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.003       1.8      17      55 ..     472     514 ..     465     529 .. 0.79
   2 ?    0.9   0.0      0.28   1.7e+02      18      39 ..     829     850 ..     825     874 .. 0.80
   3 ?   -0.1   0.0      0.58   3.5e+02      16      51 ..    1113    1152 ..    1102    1159 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.003
  TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairarg....draivlDltGaf 55 
                    h l++G+tGsGK++ l+  ++a+           + +D++G  
     KIR64856.1 472 HGLVIGATGSGKSELLRTVVAALAVTHsseeLNFVLVDFKGGA 514
                    889**************99988765443333567777887765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.28
  TrwB_AAD_bind  18 ilivGttGsGKtqalekllrai 39 
                    ++ivG+  sGK++ l++ll+++
     KIR64856.1 829 VVIVGASLSGKSTLLRSLLASL 850
                    789****************976 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.58
  TrwB_AAD_bind   16 qhilivGttGsGKtqalekllrairarg....draivlDl 51  
                      h+ ++G +  GKt+ l+ + r+i +r      r +++D 
     KIR64856.1 1113 PHLTVFGDAECGKTNLLRVIARGIVERYtpaqARLVIADY 1152
                     699999**************99999996666589999996 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.42   2.5e+02       3      21 ..     474     492 ..     473     512 .. 0.82
   2 ?    5.4   0.0     0.035        21       2      21 ..     829     848 ..     828     865 .. 0.88
   3 ?    2.9   0.0       0.2   1.2e+02       3      25 ..    1116    1138 ..    1114    1155 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.42
                 EEESSTTSSHHHHHHCHCT CS
         Roc   3 vlvGdsgvGKtsllkrfve 21 
                 +++G +g+GK+ ll+ +v 
  KIR64856.1 474 LVIGATGSGKSELLRTVVA 492
                 589***********98875 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.035
                 EEEESSTTSSHHHHHHCHCT CS
         Roc   2 vvlvGdsgvGKtsllkrfve 21 
                 vv+vG s +GK++ll++++ 
  KIR64856.1 829 VVIVGASLSGKSTLLRSLLA 848
                 89*************99875 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.2
                  EEESSTTSSHHHHHHCHCT-CCC CS
         Roc    3 vlvGdsgvGKtsllkrfvedkfs 25  
                   + Gd++ GKt ll+ + ++ ++
  KIR64856.1 1116 TVFGDAECGKTNLLRVIARGIVE 1138
                  678***********988776555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0067         4     133     155 ..     474     496 ..     471     509 .. 0.80
   2 ?    4.4   0.0     0.028        17     129     154 ..     826     851 ..     811     857 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0067
       T2SSE 133 lvsGgTgsGKttllyallkeink 155
                 lv G+TgsGK+ ll ++++ ++ 
  KIR64856.1 474 LVIGATGSGKSELLRTVVAALAV 496
                 799***********999887754 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.028
       T2SSE 129 rglilvsGgTgsGKttllyallkein 154
                  g++++ G+  sGK+tll +ll+ ++
  KIR64856.1 826 GGNVVIVGASLSGKSTLLRSLLASLA 851
                 689****************9998775 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.025        15      22      57 ..     471     505 ..     465     517 .. 0.85
   2 ?    4.3   0.0     0.037        22      12      46 ..     817     850 ..     810     863 .. 0.77
   3 ?   -2.5   0.0       4.6   2.7e+03      17      42 ..    1107    1132 ..    1098    1145 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.025
  Mg_chelatase  22 gHnlllvGppGsGKtmlakrlpsllpplseeealev 57 
                    H  l++G+ GsGK+ l + + + l+  +++e l+ 
    KIR64856.1 471 PHG-LVIGATGSGKSELLRTVVAALAVTHSSEELNF 505
                   455.579**************999999999988875 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.037
  Mg_chelatase  12 kraleiaaaGgHnlllvGppGsGKtmlakrlpsll 46 
                      +e+a aGg n+++vG++ sGK+ l + l + l
    KIR64856.1 817 PMMVELAGAGG-NVVIVGASLSGKSTLLRSLLASL 850
                   45678888887.8999*********9988876655 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 4.6
  Mg_chelatase   17 iaaaGgHnlllvGppGsGKtmlakrl 42  
                    +  a + +l ++G + +GKt l + +
    KIR64856.1 1107 LDLASEPHLTVFGDAECGKTNLLRVI 1132
                    5567778999**********988766 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.012       7.4      20      41 ..     474     495 ..     462     509 .. 0.82
   2 ?    1.7   0.0      0.22   1.3e+02      19      42 ..     829     855 ..     808     919 .. 0.64
   3 ?   -0.4   0.0      0.99   5.9e+02     103     147 ..     947     992 ..     940    1019 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.012
  Zeta_toxin  20 llgGqpGAGKselaellkdele 41 
                 l+ G++G+GKsel++ + ++l+
  KIR64856.1 474 LVIGATGSGKSELLRTVVAALA 495
                 6779***********9998876 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.22
  Zeta_toxin  19 illgGqpGAGKselaellkdele...r 42 
                 ++++G++ +GKs+l++ l ++l+   +
  KIR64856.1 829 VVIVGASLSGKSTLLRSLLASLAlthT 855
                 567777779*******99998865440 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.99
  Zeta_toxin 103 tlr.spdvvkklaealkkaGYevevvvvavkkelSrlgvldRyeee 147
                 tlr +++++++++++l+++G    ++vv++  + +  ++  R +  
  KIR64856.1 947 TLRqEYEELEQTITNLANRGLGFGIHVVITAVRWAEIRINLRDLLG 992
                 55514688999*******************9999999999987766 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0096       5.7       2      26 ..     474     497 ..     473     520 .. 0.81
   2 ?    2.3   0.0       0.2   1.2e+02       9      26 ..     837     853 ..     829     867 .. 0.75
   3 ?   -1.4   0.0       2.6   1.6e+03       9      28 ..    1123    1140 ..    1116    1151 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0096
  Viral_helicase1   2 vvhGvpGcGKStlirkllrtslilt 26 
                      +v G+ G+GKS l+r+++   l +t
       KIR64856.1 474 LVIGATGSGKSELLRTVVAA-LAVT 497
                      788*************9977.3333 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.2
  Viral_helicase1   9 cGKStlirkllrtslilt 26 
                      +GKStl+r+ll + l lt
       KIR64856.1 837 SGKSTLLRSLLAS-LALT 853
                      9**********88.4444 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.6
  Viral_helicase1    9 cGKStlirkllrtsliltvn 28  
                       cGK+ l+r ++r   i+  +
       KIR64856.1 1123 CGKTNLLRVIARG--IVERY 1140
                       ********99987..55554 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.035        21       3      24 ..     474     495 ..     473     604 .. 0.85
   2 ?    3.0   0.0      0.12        72       3      23 ..     830     848 ..     829     882 .. 0.77
   3 ?    0.3   0.0      0.82   4.9e+02      10      20 ..    1123    1133 ..    1118    1161 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.035
      AAA_21   3 vliGpNgsGKSnLLdaldllar 24 
                 ++iG+ gsGKS LL++   +  
  KIR64856.1 474 LVIGATGSGKSELLRTVVAALA 495
                 58************99865544 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.12
      AAA_21   3 vliGpNgsGKSnLLdaldlla 23 
                 v++G+  sGKS+LL+ l  la
  KIR64856.1 830 VIVGASLSGKSTLLRSL--LA 848
                 8999999********99..44 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.82
      AAA_21   10 sGKSnLLdald 20  
                  +GK+nLL+ + 
  KIR64856.1 1123 CGKTNLLRVIA 1133
                  7********95 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.27   1.6e+02       6      39 ..     474     511 ..     471     557 .. 0.69
   2 ?    6.0   0.0      0.02        12       5      28 ..     829     854 ..     825     875 .. 0.79
   3 ?   -1.0   0.0       2.7   1.6e+03       5      24 ..    1115    1134 ..    1112    1148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.27
      AAA_14   6 vitGaRrvGKTtllkqlikell....vkkesilyinld 39 
                 ++ Ga  +GK+ ll++++  l      ++ +++ ++++
  KIR64856.1 474 LVIGATGSGKSELLRTVVAALAvthsSEELNFVLVDFK 511
                 588999***********988885543334444444443 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.02
      AAA_14   5 lvitGaRrvGKTtllkqlikell..v 28 
                 +vi+Ga  +GK+tll+ l+ +l    
  KIR64856.1 829 VVIVGASLSGKSTLLRSLLASLAltH 854
                 89***************998776552 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 2.7
      AAA_14    5 lvitGaRrvGKTtllkqlik 24  
                  l++ G   +GKT ll+ +++
  KIR64856.1 1115 LTVFGDAECGKTNLLRVIAR 1134
                  56777779******998876 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00043      0.26      22      59 ..     471     512 ..     462     525 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00043
      DUF853  22 rhGliaGatGtGktvtLqvlaesl....seaGvpvfladvkG 59 
                  hGl+ GatG Gk   L+++  +l    s+     +l+d kG
  KIR64856.1 471 PHGLVIGATGSGKSELLRTVVAALavthSSEELNFVLVDFKG 512
                 5*************9999865554222267777777888887 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.044        27       2      25 ..     474     500 ..     474     564 .. 0.73
   2 ?    3.7   0.0      0.14        85       1      22 [.     829     850 ..     829     877 .. 0.82
   3 ?   -1.8   0.0       7.1   4.3e+03       3      22 ..    1117    1136 ..    1116    1176 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.044
      AAA_18   2 lltGtpGvGKttlakeLskrlgf...g 25 
                 l+ G+ G+GK++l + +   l++   +
  KIR64856.1 474 LVIGATGSGKSELLRTVVAALAVthsS 500
                 589***********9996655444443 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.14
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 +++ G++ +GK+tl + L  +l
  KIR64856.1 829 VVIVGASLSGKSTLLRSLLASL 850
                 7899************995554 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 7.1
      AAA_18    3 ltGtpGvGKttlakeLskrl 22  
                  + G + +GKt l + +++  
  KIR64856.1 1117 VFGDAECGKTNLLRVIARGI 1136
                  6789999*****99997753 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1       0.2   1.2e+02     103     125 ..     474     494 ..     466     505 .. 0.80
   2 ?    6.6   0.0     0.011       6.7     100     124 ..     827     851 ..     799     859 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.2
                  EEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpelel 125
                  +++G +G GKS L+ +++    l
   KIR64856.1 474 LVIGATGSGKSELLRTVVAA--L 494
                  579***********999876..3 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.011
                  SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpele 124
                    +v+vG S  GKStL+ +ll +l 
   KIR64856.1 827 GNVVIVGASLSGKSTLLRSLLASLA 851
                  6789***************998765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.042        25      35      69 ..     472     505 ..     458     510 .. 0.83
   2 ?    3.5   0.0     0.076        46      26      58 ..     819     851 ..     807     862 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.042
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylsltinf 69 
                 + l++G tG+GK+ ++++++ +l   +++s  +nf
  KIR64856.1 472 HGLVIGATGSGKSELLRTVVAALA-VTHSSEELNF 505
                 6699************99998887.5666655555 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.076
       AAA_7  26 lelllknkkpvllvGptGtGKtviikdllkkld 58 
                 +  l  ++ +v++vG + +GK++++++ll +l 
  KIR64856.1 819 MVELAGAGGNVVIVGASLSGKSTLLRSLLASLA 851
                 5567778889*****************999987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0       0.2   1.2e+02       4      21 ..     475     492 ..     474     526 .. 0.83
   2 ?    8.1   0.0    0.0048       2.9       1      21 [.     828     848 ..     828     864 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.2
      AAA_28   4 itGgestGKTtlleaLaa 21 
                 ++G+ ++GK+ ll+   a
  KIR64856.1 475 VIGATGSGKSELLRTVVA 492
                 79**********987654 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0048
      AAA_28   1 kivitGgestGKTtlleaLaa 21 
                 ++vi+G++ +GK+tll+ L a
  KIR64856.1 828 NVVIVGASLSGKSTLLRSLLA 848
                 59**************99965 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.013       7.8      55      80 ..     472     497 ..     460     533 .. 0.78
   2 ?    2.3   0.3      0.13        77      54      78 ..     827     851 ..     820     855 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.013
      DUF815  55 nvLLwGarGtGKSslvkallneyaee 80 
                 + L++Ga G+GKS l++++++++a +
  KIR64856.1 472 HGLVIGATGSGKSELLRTVVAALAVT 497
                 6699***********99999887644 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.13
      DUF815  54 nnvLLwGarGtGKSslvkallneya 78 
                  nv+++Ga  +GKS+l+++ll+++a
  KIR64856.1 827 GNVVIVGASLSGKSTLLRSLLASLA 851
                 599*****************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.99u 0.29s 00:00:01.28 Elapsed: 00:00:00.49
# Mc/sec: 8053.17
//
Query:       KIR64857.1  [L=138]
Description: hypothetical protein TK50_04505 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-16   59.6   0.1    3.6e-16   59.2   0.1    1.2  1  YbaB_DNA_bd  YbaB/EbfC DNA-binding family
  ------ inclusion threshold ------
      0.081   12.3   0.4        0.2   11.0   0.4    1.5  1  DUF4407      Domain of unknown function (DUF4407)
       0.14   12.1   2.4        6.4    6.8   0.5    2.1  2  T2SSF        Type II secretion system (T2SS), protein F


Domain annotation for each model (and alignments):
>> YbaB_DNA_bd  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.1   6.1e-20   3.6e-16       2      89 ..      18     104 ..      17     106 .. 0.96

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 6.1e-20
                  HHHHHHHHHHHHHHHHHTTSEEEEEETTTTEEEEEETT--EEEEEE-GGGG.GS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-- CS
  YbaB_DNA_bd   2 kqaqkmqkkmeeaqeelaekevegssggglVkVtvngkgevksikIdpslldpedkemLedlivaAvndAlkkaeeeaeeemskltgg 89 
                  +qaq+ q++++e+q++ ae +v g+s +glV+Vtv+g+ ++ +i+I+ +++   d   L++ + aA+++A+++  e ++e + +++gg
   KIR64857.1  18 RQAQEQQRRLAELQRRRAELRVPGESPDGLVRVTVDGEMKIGDIEINARAMR-LDSFSLAESLQAAIDAAYAAYGEHQQELLTEMLGG 104
                  8*************************************************86.56899***************************987 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   3.4e-05       0.2     130     182 ..      20     114 ..      10     120 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.4e-05
     DUF4407 130 a..ltaelaeleaqia..........................................alqaeidaaearldalraeaqkeldgtkgtgttgvaGkg 182
                 a   + +lael++++a                                          +lqa+idaa a++ + ++e+  e+ g  g++  ++a +g
  KIR64857.1  20 AqeQQRRLAELQRRRAelrvpgespdglvrvtvdgemkigdieinaramrldsfslaeSLQAAIDAAYAAYGEHQQELLTEMLG--GSELVRKAQDG 114
                 2336677777777777777888899999999999999999999999999999999999***********************999..66555555555 PP

>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.5    0.0011       6.4      74      99 ..      10      35 ..       6      39 .. 0.89
   2 ?    5.2   0.1    0.0032        19      14      65 ..      74     127 ..      67     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0011
                HT-HHHHHHHHHHHHHHHHHHHHHHH CS
       T2SSF 74 ggnLaevLerlaeyleeerelrrkll 99
                gg ++ +L++++e++++ +el+r+++
  KIR64857.1 10 GGAVENMLRQAQEQQRRLAELQRRRA 35
                8999*************999999875 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0032
                 -HHHHHHHHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHC...T-TT.TS-HHHH CS
       T2SSF  14 plveaLellaeeaengplaeelkriarrlraGgslseale...rtpssefpelvv 65 
                 +l+e+L+++ + a + +++e  +++++++  G+ l +  +    tp ++f+++ v
  KIR64857.1  74 SLAESLQAAIDAA-YAAYGEHQQELLTEMLGGSELVRKAQdgtLTPQDWFRRFGV 127
                 899**********.*******************9987777788888889988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1111.00
//
Query:       KIR64858.1  [L=97]
Description: hypothetical protein TK50_04510 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.011   16.2   0.0      0.015   15.8   0.0    1.1  1  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d


Domain annotation for each model (and alignments):
>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   0.0   8.3e-07     0.015       6      92 ..       4      92 ..       2      95 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.3e-07
  T7SS_ESX_EspC  6 sVdpdhlrelaakhdevaaeiasavaaaagasaavldshGpicaatndavaaaeaarraagealaaasteL...adkLraAAaaYeatDe 92
                   +Vd d++r++++k+d+  + i+ +++      ++v    G++++   ++v+a  a+ ++ +e +++  + L   a++L ++A+++e+ D+
     KIR64858.1  4 KVDVDAIRKAGQKLDAPDGPIQYLRNVQ-SLLESVRLPEGSLTLFGGATVDAHNASVDGHLENVKTGIEHLhraAEQLEQTAKNWEKSDQ 92
                   599999*********9999999999998.88888888888888888888888888888888888888877755589************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 697.38
//
Query:       KIR64859.1  [L=241]
Description: hypothetical protein TK50_04515 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0017   17.7   1.8     0.0026   17.1   1.8    1.2  1  NADHdh    NADH dehydrogenase
  ------ inclusion threshold ------
       0.02   15.3   1.0      0.034   14.6   0.2    1.8  2  Harakiri  Activator of apoptosis harakiri
       0.24   11.6   4.9       0.71   10.0   0.0    3.1  3  CbtB      Probable cobalt transporter subunit (CbtB)
        1.3    8.2   4.1       0.49    9.7   1.6    1.4  2  S_4TM     SMODS-associating 4TM effector domain


Domain annotation for each model (and alignments):
>> NADHdh  NADH dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   1.8   5.8e-07    0.0026      57     131 ..     132     214 ..     126     221 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.8e-07
                 ----TTS-HHHHHHHHHHHHHHHHCTTTTS-SSS........SSS--TTHHHHHHHHHHHCHHHHHHHHHHHTSCCHHHHHHH CS
      NADHdh  57 diipkkadkllfllapvlalilallafaviPfge........vladlnvglllilalsslgvygillaGwasnskYallGalR 131
                 d ++++++ l+  l pvl+ ++a +a+ + P ++        +   ++v++l ++     + +  ++aG++ n+++a+++  R
  KIR64859.1 132 DAFNDAVNALVEALIPVLVAVIASVALQAFPATApiaeaigiTGLTVSVAILALVFGDISALFTSVMAGFQHNNRFAFVSDSR 214
                 5567788999999******************8844556674444445667777777777788899*************99887 PP

>> Harakiri  Activator of apoptosis harakiri
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   7.7e-06     0.034      53      86 ..      20      53 ..      14      58 .. 0.86
   2 ?   -2.2   0.0       1.3     6e+03      62      82 ..     141     158 ..     108     162 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.7e-06
    Harakiri 53 arsrdplpallpalrarwpwlcaaaqvaalaawl 86
                a +  p+ +llpa ra w wl+ a+ +a   a+l
  KIR64859.1 20 AATTAPVRGLLPAARANWVWLVGASLLAMGIAYL 53
                5566799*****************9999877776 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.3
    Harakiri  62 llpalrarwpwlcaaaqvaal 82 
                 l+    a  p l+a     al
  KIR64859.1 141 LV---EALIPVLVAVIASVAL 158
                 22...2336666665555555 PP

>> CbtB  Probable cobalt transporter subunit (CbtB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00016      0.71       6      33 ..      33      60 ..      30      63 .. 0.87
   2 ?   -1.5   0.5      0.62   2.8e+03       5      23 ..     140     158 ..     136     165 .. 0.70
   3 ?    1.9   0.2     0.056   2.5e+02       9      32 ..     181     204 ..     173     206 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00016
        CbtB  6 saqrllqlvaAllLGlllvylvgfsqaa 33
                +++  ++lv+A lL+++++yl  f++ +
  KIR64859.1 33 ARANWVWLVGASLLAMGIAYLETFDNDE 60
                567789*****************99876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.62
        CbtB   5 asaqrllqlvaAllLGlll 23 
                 a +++l+++++A++  ++l
  KIR64859.1 140 ALVEALIPVLVAVIASVAL 158
                 5667778888887766554 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.056
        CbtB   9 rllqlvaAllLGlllvylvgfsqa 32 
                 ++l+lv++ + +l++  ++gf++ 
  KIR64859.1 181 AILALVFGDISALFTSVMAGFQHN 204
                 344455555555888889999875 PP

>> S_4TM  SMODS-associating 4TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.85   3.8e+03      42      80 ..      22      60 ..      12      64 .. 0.63
   2 ?    9.7   1.6   0.00011      0.49      12      74 ..     123     184 ..     117     191 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.85
       S_4TM 42 ivlsvlavlvpslktylallgllwllldvlvldrlqkke 80
                + ++v ++l    ++++ l+g+ +l++++  l+++ ++e
  KIR64859.1 22 TTAPVRGLLPAARANWVWLVGASLLAMGIAYLETFDNDE 60
                445555554444677777777777777777777776665 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00011
       S_4TM  12 nlellaAqrqlYsrakrlqalrvilsvvlaivlsvlavlvpslktylallgllwllldvlvld 74 
                 n e l+A+r ++++a + + ++ ++ v++a+++sv+  ++p  ++++ ++g++ l+++v +l+
  KIR64859.1 123 NKESLTAARDAFNDAVN-ALVEALIPVLVAVIASVALQAFPATAPIAEAIGITGLTVSVAILA 184
                 668899********966.57888899999999999999****888887777777777776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       982  (0.0547716); expected 358.6 (0.02)
Passed bias filter:                      675  (0.0376485); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1733.87
//
Query:       KIR64860.1  [L=85]
Description: hypothetical protein TK50_04520 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19   12.1   4.8       0.21   11.9   4.8    1.1  1  DUF1772   Domain of unknown function (DUF1772)
       0.26   11.2   6.6      0.047   13.6   2.3    1.8  2  DsbD_2    Cytochrome C biogenesis protein transmembrane regio
        0.5   10.1   3.8       0.57   10.0   1.2    2.0  2  DUF4051   Protein of unknown function (DUF4051)
        2.1    7.9   5.6        2.4    7.6   5.6    1.1  1  DUF1700   Protein of unknown function (DUF1700)
        3.3    7.3   7.1         14    5.3   7.1    1.8  1  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   4.8   5.8e-05      0.21       3      80 ..       4      77 ..       3      84 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.8e-05
     DUF1772  3 ilafslfvvPallslpassslllkqwrrlfkrgkavfpplallsalafa.yla.araasrgarllylaaaallllsivpy 80
                ++ fsl+++P +l l      +++ wr ++++      +++l+ ++a++ +++ +   ++  +  ++++a+ll++++v +
  KIR64860.1  4 LFVFSLLTIPVFLVLG--L--VAQIWRVTWAKR--GSEVAVLAGVAALLpVVFeRAFEKPVLWPGVVLLAVLLVFGVVMH 77
                689**********888..3..678999999554..444444455555554445477888899999999999999998865 PP

>> DsbD_2  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.3   1.3e-05     0.047     154     191 ..       2      39 ..       1      51 [. 0.76
   2 ?    0.6   0.8      0.13   4.6e+02      49      87 ..      39      75 ..      36      83 .. 0.47

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
      DsbD_2 154 lvmlaFgLGTlpalllfglllgllskklrkkllrlagv 191
                 +++++F+L T+p++l++gl++++++  + k+  ++a +
  KIR64860.1   2 VALFVFSLLTIPVFLVLGLVAQIWRVTWAKRGSEVAVL 39 
                 6789********************98877665554332 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.13
      DsbD_2 49 lGalvgllgsvlqlageleglrallgvllgllllllglk 87
                l+++++ll  v++ a e +    + gv+l+++ll++g+ 
  KIR64860.1 39 LAGVAALLPVVFERAFEKP--VLWPGVVLLAVLLVFGVV 75
                4455555555555444332..234444444444444443 PP

>> DUF4051  Protein of unknown function (DUF4051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.13   4.6e+02      12      32 ..      14      34 ..       4      46 .. 0.73
   2 ?   10.0   1.2   0.00016      0.57       5      26 ..      60      82 ..      58      84 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.13
     DUF4051 12 vlvvvgyichlkRycrAfRqd 32
                v +v+g +  + R   A R  
  KIR64860.1 14 VFLVLGLVAQIWRVTWAKRGS 34
                678899999888888777765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00016
     DUF4051  5 Wywll.lvvlvvvgyichlkRyc 26
                W +++ l vl+v+g ++h++ y 
  KIR64860.1 60 WPGVVlLAVLLVFGVVMHVRSYR 82
                77765156899********9775 PP

>> DUF1700  Protein of unknown function (DUF1700)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.6   0.00068       2.4      90     158 ..       4      77 ..       1      82 [. 0.74

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00068
     DUF1700  90 llnlilvlipliviislvlsllvvalal......lvsplvllvksllkgfeelslnvfvsigllglGllllivay 158
                 l+ + l+ ip+++++ lv+ ++ v+ a       ++++++ l+ ++++  +e  + ++ ++ ll++ l++ +v+ 
  KIR64860.1   4 LFVFSLLTIPVFLVLGLVAQIWRVTWAKrgsevaVLAGVAALLPVVFERAFEKPV-LWPGVVLLAVLLVFGVVMH 77 
                 5556667789999999999999999887777777888888777777775555554.7999999998888888775 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   7.1     0.004        14      26      54 ..      36      83 ..       2      85 .] 0.58

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.004
     DUF4131 26 r...................rprrrvllllllllllallgfalrapqp 54
                                    +p     ++ll++ll++++++++r++++
  KIR64860.1 36 VavlagvaallpvvferafeKPVLWPGVVLLAVLLVFGVVMHVRSYRK 83
                033333333333333334455556666666666677777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 601.30
//
Query:       KIR64861.1  [L=102]
Description: hypothetical protein TK50_04525 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-16   58.2   1.2    7.4e-16   58.2   1.2    1.4  1  WXG100         Proteins of 100 residues with WXG
  ------ inclusion threshold ------
      0.022   15.0   0.1      0.025   14.8   0.1    1.1  1  Cor1           Cor1/Xlr/Xmr conserved region
      0.061   13.8   1.6      0.085   13.3   1.6    1.3  1  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d


Domain annotation for each model (and alignments):
>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   1.2   1.2e-19   7.4e-16       3      80 ..       4      81 ..       2      87 .. 0.95

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.2e-19
                CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  3 kvdpeelrqaaarfqkqaeeledelqrlkaevdalqsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaana 80
                +vd++ l +aa++++++++++ +el++l + vd+l+ +W+G+a++ fq+ + +w++  +kl +a+++i++ l++++++
  KIR64861.1  4 EVDASTLHTAANDVRSTRGDVDGELKKLWNVVDDLAMAWKGQASSGFQQLMLRWNEDTAKLLTAMDNIADLLDKSGTT 81
                799***********************************************************************9987 PP

>> Cor1  Cor1/Xlr/Xmr conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   4.3e-06     0.025      14      95 ..      17      98 ..      13     101 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.3e-06
        Cor1 14 vkaslkssnekieqvwktqqeerqklkeeysqqfltlfqqwetdvqkvkeqeeklsnlfqqqqkllqqarvvqeqrlkeikq 95
                v+++  +++ +++++w+   +  ++ k + s  f++l+  w++d  k+    ++++ l+++   + q     q+q+l++++ 
  KIR64861.1 17 VRSTRGDVDGELKKLWNVVDDLAMAWKGQASSGFQQLMLRWNEDTAKLLTAMDNIADLLDKSGTTHQVNDEEQQQMLDKFHA 98
                556666777889999***************************************************************9985 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.6   1.4e-05     0.085       6     100 .]       4      95 ..       1      95 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.4e-05
  T7SS_ESX_EspC   6 sVdpdhlrelaakhdevaaeiasavaaaagasaavldshGpicaatndavaaaeaarraagealaaasteLadkLraAAaaYeatDeeaagaldk 100
                    +Vd++ l ++a +++++ ++++  ++   + +++++     ++ +  + ++++    +++ ++l +a++ +ad L+++ ++ +  Dee+ ++ldk
     KIR64861.1   4 EVDASTLHTAANDVRSTRGDVDGELKKLWNVVDDLAMA---WKGQASSGFQQLMLRWNEDTAKLLTAMDNIADLLDKSGTTHQVNDEEQQQMLDK 95 
                    67888888888888888888888887776666666666...9999999999999999************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       992  (0.0553294); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 755.22
//
Query:       KIR64862.1  [L=93]
Description: hypothetical protein TK50_04530 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-12   46.9   0.8    2.8e-12   46.7   0.8    1.1  1  WXG100         Proteins of 100 residues with WXG
  ------ inclusion threshold ------
      0.027   15.0   0.3      0.063   13.8   0.3    1.6  1  Syntaxin-6_N   Syntaxin 6, N-terminal
      0.037   14.5   0.3       0.06   13.8   0.3    1.3  1  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d
      0.049   12.6   0.1      0.051   12.5   0.1    1.0  1  Ran-binding    RanGTP-binding protein
      0.068   12.3   0.1      0.081   12.0   0.1    1.0  1  Cas_Cas1       CRISPR associated protein Cas1
        0.1   11.4   0.1        0.1   11.3   0.1    1.0  1  Gsf2           Glucose signalling factor 2


Domain annotation for each model (and alignments):
>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.8   9.4e-16   2.8e-12       1      85 [.       2      84 ..       2      85 .. 0.97

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 9.4e-16
                CHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  1 qikvdpeelrqaaarfqkqaeeledelqrlkaevdalqsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaanafedaD 85
                +ikvd+++l+++ +++ +++ ++ + l++l++++++l+  W+G+ ++a+++ +++w++a++++++ L++i+ a+  a +++  ++
  KIR64862.1  2 SIKVDYAVLESSNQQMTAISRTIDEKLDTLRSMLSKLH--WEGEDRTAYEQHQAQWDAAVRDINKILNDIGGAVGIARENYVTTE 84
                59**********************************96..***********************************9999999887 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3   2.1e-05     0.063       8      80 ..      22      89 ..       5      92 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.1e-05
  Syntaxin-6_N  8 eeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvriveknpskfkideke 80
                  + + ++l++++s++++ +    ++  + +  +++++ +  +a+r+i++ l+d+  +v+i+++n    ++++++
    KIR64862.1 22 RTIDEKLDTLRSMLSKLHW---EG--EDRTAYEQHQAQWDAAVRDINKILNDIGGAVGIARENYVTTEMSNSK 89
                  4566777777777777653...12..248999****************************9997667776665 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3     2e-05      0.06       5      95 ..       3      88 ..       1      92 [. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
  T7SS_ESX_EspC  5 LsVdpdhlrelaakhdevaaeiasavaaaagasaavldshGpicaatndavaaaeaarraagealaaasteLadkLraAAaaYeatDeeaa 95
                   ++Vd ++l +  +++++++ +i+  +++      +++ s   +  + ++a ++ +a  +aa++++++ ++++   +  A ++Y  t++ ++
     KIR64862.1  3 IKVDYAVLESSNQQMTAISRTIDEKLDTL-----RSMLSKLHWEGEDRTAYEQHQAQWDAAVRDINKILNDIGGAVGIARENYVTTEMSNS 88
                   789999******************99999.....55555567999*****************************************99887 PP

>> Ran-binding  RanGTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.7e-05     0.051      82     140 ..      15      73 ..       3      85 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.7e-05
  Ran-binding  82 esaveLtksLkkeieelgerleeaaekeekskkkeeekeelkkviedikeLLkrieeai 140
                  ++++++ +++ +++++l + l+++  + e++++ e+++++ ++ ++di+++L++i  a+
   KIR64862.1  15 QQMTAISRTIDEKLDTLRSMLSKLHWEGEDRTAYEQHQAQWDAAVRDINKILNDIGGAV 73 
                  455677788999999999999999999999999**********************9887 PP

>> Cas_Cas1  CRISPR associated protein Cas1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.7e-05     0.081      88     160 ..       7      78 ..       3      83 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.7e-05
                 HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCTT.HHHHCHCHHHHHHHHHHHH-HSHHHHHHHHHHHHH CS
    Cas_Cas1  88 yraaddeekrlelakkivagklenqrkvlrrlkrdree.eeleeaieeleelleklekaesleeLrgiEGeaak 160
                 y++++++++++    + +++kl+  r++l++l+ + e+ ++ e++ ++ ++++++++k+  l+ + g  G a++
  KIR64862.1   7 YAVLESSNQQMTAISRTIDEKLDTLRSMLSKLHWEGEDrTAYEQHQAQWDAAVRDINKI--LNDIGGAVGIARE 78 
                 788999999**************************977788888888888888888876..5555555555555 PP

>> Gsf2  Glucose signalling factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   3.5e-05       0.1     217     270 ..      20      79 ..       7      90 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.5e-05
        Gsf2 217 kkkelskkkdelkeelkslGWiGarratldeYkekyy......eykikkaGgavqayraG 270
                  ++++++k d+l+++l +l W G  r++++++++++       + +++++Ggav   r  
  KIR64862.1  20 ISRTIDEKLDTLRSMLSKLHWEGEDRTAYEQHQAQWDaavrdiNKILNDIGGAVGIAREN 79 
                 3456678999***********************998522222245678888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1065  (0.059401); expected 358.6 (0.02)
Passed bias filter:                      694  (0.0387082); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 687.20
//
Query:       KIR64863.1  [L=179]
Description: hypothetical protein TK50_04540 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.4   0.4       0.25   11.7   0.4    1.3  1  ATG_C     Autophagy-related protein C terminal domain


Domain annotation for each model (and alignments):
>> ATG_C  Autophagy-related protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   1.4e-05      0.25      10      54 ..     123     167 ..     116     176 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.4e-05
       ATG_C  10 dlreGlqqAysslskglksaaqtilavpsevaeskgakgavkavv 54 
                  +  G + + ++ls++l saa+++ +v+++ ++ +ga+++ ++ +
  KIR64863.1 123 QVYTGTEGGLRTLSENLYSAAEALRTVKRNYETAEGANEMTAQEM 167
                 67789999**********************999999988776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1164.82
//
Query:       KIR64864.1  [L=341]
Description: hypothetical protein TK50_04565 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.062   12.4   1.0      0.089   11.9   1.0    1.2  1  Atg14         Vacuolar sorting 38 and autophagy-related subun
      0.088   12.9   0.3      0.088   12.9   0.3    1.7  2  BLOC1S3       Biogenesis of lysosome-related organelles compl
       0.17   11.8   0.2       0.17   11.8   0.2    1.6  2  Sec8_exocyst  Sec8 exocyst complex component specific domain
       0.21   10.5   0.6       0.26   10.2   0.6    1.1  1  LMBR1         LMBR1-like membrane protein
        2.1    8.9  12.9       0.14   12.7   2.6    2.1  2  APG6_N        Apg6 coiled-coil region
        5.2    6.8   5.2        1.2    8.9   0.2    2.0  2  EMC3_TMCO1    Integral membrane protein EMC3/TMCO1-like


Domain annotation for each model (and alignments):
>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.0     3e-05     0.089      56     173 ..      42     183 ..      29     196 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3e-05
       Atg14  56 eqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk...........................kRrsdleslqnelee 127
                 ++++d+ +  ++ +e +  + a+ +++l++ k+++ ql +e+++++++l +l  ++                             +r++   + +el+ 
  KIR64864.1  42 HEEDDEPQLITDVIEATNRDYAQAKSKLEKSKKRQAQLADEVRKAQEELDALAPQVGemaaqsyrtgrvgamamllesntpdsfVKRAS---ALDELNM 137
                 55667777777788888888899999999999999999999999999999999999988899988888888888888888877755555...6777777 PP

       Atg14 128 rrkkqiaklqdaikrieqklsslssktlesrsslcselaklyglrr 173
                   ++++a+++ a  r eq + +l  +  e++ + + ++ k++++ +
  KIR64864.1 138 VNANKLAEVSAAKNRAEQAKLALDAEVREQQKQASVMAKKKFDAEK 183
                 7777777777777777777777777777777777777777777765 PP

>> BLOC1S3  Biogenesis of lysosome-related organelles complex 1 subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   2.9e-05     0.088     111     165 ..      49     103 ..      44     106 .. 0.91
   2 ?   -1.8   0.1      0.96   2.9e+03      81      81 ..     150     150 ..     112     185 .. 0.42

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.9e-05
     BLOC1S3 111 eavsqvysaaskelesvtsqLnksqsaiqnashsirlilddlkavsekldiitsc 165
                 + +++v++a++++ ++++s+L ks+    + + ++r+++++l+a++ ++  ++++
  KIR64864.1  49 QLITDVIEATNRDYAQAKSKLEKSKKRQAQLADEVRKAQEELDALAPQVGEMAAQ 103
                 789******************************************9998777665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.96
     BLOC1S3  81 a 81 
                  
  KIR64864.1 150 K 150
                 1 PP

>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   5.7e-05      0.17      73     120 ..      61     108 ..      55     119 .. 0.92
   2 ?   -3.0   0.2       2.1   6.2e+03      87     104 ..     145     162 ..     130     176 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.7e-05
  Sec8_exocyst  73 sYskilssiqesqekvselKesleeakkklstkkkeLkelnarsakyk 120
                    Y ++ s++++s+++ ++l +++++a+++l +  ++  e++a+s +  
    KIR64864.1  61 DYAQAKSKLEKSKKRQAQLADEVRKAQEELDALAPQVGEMAAQSYRTG 108
                   5999***************************************98865 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.1
  Sec8_exocyst  87 kvselKesleeakkklst 104
                   +vs+ K++ e+ak +l +
    KIR64864.1 145 EVSAAKNRAEQAKLALDA 162
                   455556666666555544 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.6   8.6e-05      0.26     194     300 ..      61     176 ..      18     188 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 8.6e-05
       LMBR1 194 iksdldeelkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilkkvPeeiaeklks.......nenk..teeslaklekqlika 283
                 + ++ +++l+k + + a+l +e  +a++el+ l  +v ++  +  ++ ++  +   + +++P  + +++++       n nk    ++ ++  +q + a
  KIR64864.1  61 DYAQAKSKLEKSKKRQAQLADEVRKAQEELDALAPQVGEMAAQSYRTGRVGAMAMLLESNTPDSFVKRASAldelnmvNANKlaEVSAAKNRAEQAKLA 159
                 5577889999999999***************9999999998888888866677777778********98888876555222221333333333555555 PP

       LMBR1 284 lqkrertekqwkrllek 300
                 l  ++r++++    + k
  KIR64864.1 160 LDAEVREQQKQASVMAK 176
                 66665555554444433 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.6   4.7e-05      0.14      45      95 ..      44      94 ..      31     106 .. 0.84
   2 ?    1.6   2.8      0.12   3.7e+02      67      94 ..     147     174 ..     117     186 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.7e-05
      APG6_N 45 qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeeleale 95
                +d+e + + + +e+++++ +++ ++L++ +k +++l++e+++++eel+al 
  KIR64864.1 44 EDDEPQLITDVIEATNRDYAQAKSKLEKSKKRQAQLADEVRKAQEELDALA 94
                3667777777899999*******************************9996 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
      APG6_N  67 leeLkelekereeleaelaaleeeleal 94 
                  +  +++e+++ +l+ae+++++++++ +
  KIR64864.1 147 SAAKNRAEQAKLALDAEVREQQKQASVM 174
                 2222344555555555555555555443 PP

>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2   0.00039       1.2      41      95 ..      66     120 ..      50     126 .. 0.86
   2 ?   -0.3   0.8      0.27   7.9e+02      48      77 ..     154     183 ..     129     189 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00039
  EMC3_TMCO1  41 kkkmekeqkrekelqkrarelqkngdklklkklekrqeelmedqsemmmdqmkpm 95 
                 k+k+ek +kr+++l +++r++q++ d l+++  e+  + + +   + m + + ++
  KIR64864.1  66 KSKLEKSKKRQAQLADEVRKAQEELDALAPQVGEMAAQSYRTGRVGAMAMLLESN 120
                 6789***************************999999999998888888877666 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.27
  EMC3_TMCO1  48 qkrekelqkrarelqkngdklklkklekrq 77 
                 ++ + +l  ++re qk+ +  ++kk+ +++
  KIR64864.1 154 EQAKLALDAEVREQQKQASVMAKKKFDAEK 183
                 444445667778888888888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1464  (0.0816554); expected 358.6 (0.02)
Passed bias filter:                      670  (0.0373696); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 2535.70
//
Query:       KIR64865.1  [L=479]
Description: YibE/F family protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-70  237.6  22.8    2.1e-70  237.0  22.8    1.3  1  YibE_F    YibE/F-like protein


Domain annotation for each model (and alignments):
>> YibE_F  YibE/F-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.0  22.8   1.2e-74   2.1e-70       1     240 [.     150     388 ..     150     389 .. 0.98

  Alignments for each domain:
  == domain 1  score: 237.0 bits;  conditional E-value: 1.2e-74
      YibE_F   1 lllllllfllllllvggkkGlkallslvlnllvlilvllplllkgvspllvalilvilitvvtlllvngfnkktlaallgtllgvllalllallvikla 99 
                 l++l+++f+l+++++g+++G++al +l+ ++++l+ ++lp + +g spl++a++ ++li++v+l+l++g++++t++a+lgtl++++l++ll+ l++ ++
  KIR64865.1 150 LIWLAVVFALAIVAFGRWRGVAALAGLAATFAILLTFVLPGIGAGGSPLPIAVVGSALIMFVVLYLTHGVTAQTSVAVLGTLGSLVLTGLLGTLATAAT 248
                 689************************************************************************************************ PP

      YibE_F 100 kltGlnseeaeellylplqgldlsglllagiligalGAvmDvaisiasaleElkeknpdisrkelfksgmniGrdiiGtmvntLllaylGgslplllll 198
                 +ltG++se+a +l ++   ++dl+glllagi+ig+lG++ Dv++++a+++ El+++np +sr +l++++ ++Gr +i+++vnt++lay+G+slplllll
  KIR64865.1 249 HLTGYGSEDATTLSMFR-GDVDLHGLLLAGIIIGSLGVLDDVTVTQAATVTELAHANPGLSRLQLYRAATRVGRAHIASTVNTIVLAYAGASLPLLLLL 346
                 **********9997766.68******************************************************************************* PP

      YibE_F 199 langyslsqilnskiialeilrtlvgsiGivlavPitaliaa 240
                  a ++++++il+s+++a+ei+r+ v+++G+++avP+t+ +aa
  KIR64865.1 347 TADSRPVTEILTSEFLAQEIVRSAVATLGLIAAVPLTTGLAA 388
                 **************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3604.82
//
Query:       KIR64866.1  [L=673]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-47  161.4   3.6    1.6e-47  161.4   3.6    2.0  2  E1-E2_ATPase  E1-E2 ATPase
    1.8e-45  155.8   7.5    4.2e-45  154.6   7.5    1.7  1  Hydrolase     haloacid dehalogenase-like hydrolase
      5e-07   30.3   2.5    1.7e-06   28.6   1.1    2.6  2  HAD           haloacid dehalogenase-like hydrolase
    4.3e-05   23.4   0.2    0.00025   20.9   0.2    1.9  2  Hydrolase_3   haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.01   15.9   0.4        2.4    8.3   0.0    2.9  3  Hydrolase_6   Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   3.6   4.4e-51   1.6e-47       3     180 ..     154     331 ..     152     332 .. 0.96
   2 ?   -3.3   1.1       1.5   5.4e+03     121     158 ..     622     659 ..     599     664 .. 0.61

  Alignments for each domain:
  == domain 1  score: 161.4 bits;  conditional E-value: 4.4e-51
                   S--EEEEE.-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTS CS
  E1-E2_ATPase   3 lpptakvi.rdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkia 98 
                   lp+ a ++  dg +e+++++ l++GD++l+++g rvpaDgr+v+g ae+des++TGEs+pv ++ gd+v +Gtv ++  ++++V atge+t+l+ i 
    KIR64866.1 154 LPDDAERVgPDGGTERVPVAALHVGDVLLVRPGGRVPADGRVVDGAAELDESMITGESRPVARSVGDRVVAGTVATDSALRVEVQATGEETTLAGIQ 250
                   6677777779*************************************************************************************** PP

                   TTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  99 rlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrlak 180
                   r+v+ea+++  + q  +d+++++l+ v+++ a+++++++ llg++  ea++r++++lv+a+P aL+la+pl++al+++ +a+
    KIR64866.1 251 RMVAEAQRSSGRAQVLADRFAAWLFYVATATAVVTVVVWSLLGDTD-EAVVRTVTVLVIACPHALGLAIPLVIALSTAVAAR 331
                   ***************************************8888876.******************************99997 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.5
                   HHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHH CS
  E1-E2_ATPase 121 vlvpvvlliallvflialllgkslaeallralallvaa 158
                    + +v+l +a+ v++ a +   +++ a+l + +++v+a
    KIR64866.1 622 GYNVVALPLAAGVLAWAGVALSPAVGAILMSASTIVVA 659
                   35566666666666666666666667777766666665 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.6   7.5   1.2e-48   4.2e-45       1     210 []     348     571 ..     348     571 .. 0.92

  Alignments for each domain:
  == domain 1  score: 154.6 bits;  conditional E-value: 1.2e-48
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHH......HHCHHHHHHHHHHHHHHHHH..HHHHHETTTE........HHHHTHHHHHHHH..H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx........xxxxxxxxxxxxx..x RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletg......sehpigkalvaaakarsgal..tgfatfigrg........ayaigkpewltal..d 81 
                 +++v+fDk+GTLt+ge+ v+ v + a   + + l+++      sehp+++a+vaaa++r+g+   tgf++++grg        +ya+g p +l++l   
  KIR64866.1 348 VDAVLFDKTGTLTRGEHAVTGVAAVAGTGEDELLRLAagveadSEHPLARAIVAAAEQRGGPApaTGFRALPGRGvratidgtEYAVGGPALLRELgvG 446
                 689***********************66666666666666666****************665556*******************************999 PP

                 CHHHHHHHHHHHHHHCHHHHHH...TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTE.EEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSH CS
                 xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  82 ippdlgaaigsaqsqgrtvall...qaralavftiadplkvkpeaaeavasLkaagi.evvlltgdnpetaeraanqlGddyfdaviasdietvakpsp 176
                  p++l++a  ++ ++g  v  l    + +l+ +++ad+  v+pea+ea+a+L+a+gi  ++++tgd ++ a+++a  lG        a+ +e++a+++p
  KIR64866.1 447 LPTELEQAAADWAGRGAAVLHLvrlPGTVLGALALADE--VRPEAREAIAELRAQGIrTIAMITGDARAVADAVAADLG------FRAGVDEVFAEVLP 537
                 999999999999999999998899989***********..*****************88********************......56666777****** PP

                 HHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 177 egkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                  +k  ++ eLq ++  vamVGDgvnDa+ala+A+
  KIR64866.1 538 ADKDGKVTELQRRGLTVAMVGDGVNDAPALARAD 571
                 ********************************98 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.36   1.3e+03     112     151 ..     212     248 ..     205     280 .. 0.56
   2 !   28.6   1.1   4.7e-10   1.7e-06      86     187 ..     485     567 ..     351     568 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.36
         HAD 112 rplvepllaelgadevlatelevdd..rltgelglegkpvrg 151
                 r    p+++ +g d+v+a  +++d   r+  ++ +e++  +g
  KIR64866.1 212 R----PVARSVG-DRVVAGTVATDSalRVEVQATGEETTLAG 248
                 4....4555555.66666666666666555444455544444 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 4.7e-10
         HAD  86 ldpgalellaahraaGd.rvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvay.GDsps 182
                  +p+a+e++a+ ra+G+ ++++++g  r ++ +++a lg              ++   + e  p  ++gkv++l++      +g+    +va  GD+++
  KIR64866.1 485 VRPEAREAIAELRAQGIrTIAMITGDARAVADAVAADLG----FRA------GVDEV-FAEVLPADKDGKVTELQR------RGL----TVAMvGDGVN 562
                 569**************8889******************....555......33333.66678888999*******......666....45555***** PP

         HAD 183 Dlpll 187
                 D p+l
  KIR64866.1 563 DAPAL 567
                 ***98 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.18   6.5e+02      14      35 ..     483     504 ..     473     528 .. 0.72
   2 !   20.9   0.2     7e-08   0.00025     205     253 ..     553     601 ..     544     602 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.18
                  S---HHHHHHHHHHHHTTSEEE CS
  Hydrolase_3  14 kkisektkeaikklkekgikvv 35 
                   ++ ++++eai++l+++gi  +
   KIR64866.1 483 DEVRPEAREAIAELRAQGIRTI 504
                  578899************9754 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 7e-08
                  GEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHH CS
  Hydrolase_3 205 eviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVak 253
                   v+ +GDg ND + L +a++g+A+g +++ +++ A  v +s +  GVa 
   KIR64866.1 553 TVAMVGDGVNDAPALARADVGIAIGAGTDVAIESAGVVLASSDPRGVAA 601
                  68899******************************************96 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       3.7   1.3e+04      10      27 ..     134     151 ..     134     152 .. 0.88
   2 ?    4.6   0.0    0.0098        35       1      22 [.     351     372 ..     351     384 .. 0.88
   3 ?    8.3   0.0   0.00068       2.4       7      57 ..     477     529 ..     475     554 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.7
                  EETTEE-TTHHHHHHHHH CS
  Hydrolase_6  10 wrgdkaipgaaealnalr 27 
                  w+++kai +a  al al 
   KIR64866.1 134 WQEMKAIGQARGALAALA 151
                  8999******99999986 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0098
                  EEEESTTTSEETTEE-TTHHHH CS
  Hydrolase_6   1 flfDidGvLwrgdkaipgaaea 22 
                  +lfD  G+L rg++a+ g+a +
   KIR64866.1 351 VLFDKTGTLTRGEHAVTGVAAV 372
                  69****************9976 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00068
                  TTSEETTEE-TTHHHHHHHHHHTT-E.EEEEE---SS-HHHHHHHH.HHTT-- CS
  Hydrolase_6   7 GvLwrgdkaipgaaealnalraagkp.vvllTNnsskseeeyakkl.eklgvd 57 
                  G L   d++ p+a ea+  lra+g++ ++++T  ++   +++a++l  + gvd
   KIR64866.1 477 GALALADEVRPEAREAIAELRAQGIRtIAMITGDARAVADAVAADLgFRAGVD 529
                  7888899999**************76156788877777777776665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 4271.26
//
Query:       KIR64867.1  [L=216]
Description: hypothetical protein TK50_04580 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.32   11.1   5.6       0.64   10.1   2.7    2.4  2  DUF2933   Protein of unknown function (DUF2933)


Domain annotation for each model (and alignments):
>> DUF2933  Protein of unknown function (DUF2933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.7   3.6e-05      0.64      26      47 ..       9      37 ..       1      42 [. 0.61
   2 ?    1.2   0.0     0.022   3.9e+02       1      17 [.     165     181 ..     165     184 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3.6e-05
     DUF2933 26 llLLlCPl.....mHlFMhgghgg..hgg 47
                l LLlC l     mH + hg h g  h g
  KIR64867.1  9 LALLLCTLiglaaMHTLGHGAHSGgtHAG 37
                789***99444445555555554444444 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.022
     DUF2933   1 lvllliaaffLltehra 17 
                 l+++l +a +Llt++ra
  KIR64867.1 165 LGVALLVAVLLLTRARA 181
                 588999999****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1461.88
//
Query:       KIR64868.1  [L=100]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-30  103.6   1.8    6.6e-30  103.3   1.8    1.0  1  Trns_repr_metal  Metal-sensitive transcriptional repressor
  ------ inclusion threshold ------
      0.017   15.2   0.1       0.04   14.0   0.0    1.6  2  YojJ             Bacterial membrane-spanning protein N-termin


Domain annotation for each model (and alignments):
>> Trns_repr_metal  Metal-sensitive transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   1.8   7.3e-34   6.6e-30       2      75 ..      16      93 ..      15      95 .. 0.90

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 7.3e-34
                     HHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHH CS
  Trns_repr_metal  2 kkkllnrLkrieGQvrgiqrmieedryCidiltQlaAvrsalnkvglelledhlkhcvaeaiee....ekieeliell 75
                     k++ll+rL+r+eGQvrgi++m++edryCid+ltQ++A+++al+kv+l ll+ h++hc+ e + e    e+  e+++++
       KIR64868.1 16 KDQLLARLRRVEGQVRGIEKMVDEDRYCIDVLTQISAIQAALDKVALGLLDGHARHCLHEGAVEgradEMATEMMAAV 93
                     89*********************************************************6663446678888998876 PP

>> YojJ  Bacterial membrane-spanning protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.5e-06      0.04       9      52 ..      14      59 ..      10      62 .. 0.88
   2 ?   -2.3   0.0      0.55     5e+03      21      32 ..      78      89 ..      77      96 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.5e-06
        YojJ  9 elkeklkeeLeqiekeleevlkaldeedeCl..Lcelesirekfae 52
                + k +l   L+ +e+++  + k  de+  C+  L+++  i+  + +
  KIR64868.1 14 ASKDQLLARLRRVEGQVRGIEKMVDEDRYCIdvLTQISAIQAALDK 59
                5699**************************7669999999987765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.55
        YojJ 21 iekeleevlkal 32
                +e++++e+ +++
  KIR64868.1 78 VEGRADEMATEM 89
                677788887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 708.81
//
Query:       KIR64869.1  [L=69]
Description: copper-transporting ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-15   56.3   0.3    3.5e-15   56.2   0.3    1.0  1  HMA       Heavy-metal-associated domain
  ------ inclusion threshold ------
       0.02   14.7   0.1      0.085   12.7   0.0    1.8  2  TusA      Sulfurtransferase TusA
       0.11   12.9   0.1       0.11   12.9   0.1    1.1  1  PCC_BT    Propionyl-coenzyme A carboxylase BT domain


Domain annotation for each model (and alignments):
>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.3   5.9e-19   3.5e-15       1      62 []       5      65 ..       5      65 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 5.9e-19
         HMA  1 tvrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaes.tklrkiieaiekagyk 62
                t+ v gm C++Ca++v   + +++gV++vkvdl+ ++vtV+ d +  t  +++++a+++agy+
  KIR64869.1  5 TYEVRGMSCGHCAGSVVTEVGAIDGVTNVKVDLEGGRVTVTSDNPLdT--ETVRAAVDEAGYT 65
                6789**************************************999945..9***********5 PP

>> TusA  Sulfurtransferase TusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.11   6.5e+02       2      10 ..       5      13 ..       4      27 .. 0.83
   2 ?   12.7   0.0   1.4e-05     0.085      26      56 ..      38      68 ..      30      69 .] 0.92

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.11
                EEEBTT-ST CS
        TusA  2 elDlrGlvC 10
                ++ +rG++C
  KIR64869.1  5 TYEVRGMSC 13
                567999999 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.4e-05
                CT-EEEEEESSCHHHHHHHHHHHHHTEEEEE CS
        TusA 26 egevlevladdpaatediprfakklghelve 56
                eg ++ v++d+p  te++++ +++ g++lv+
  KIR64869.1 38 EGGRVTVTSDNPLDTETVRAAVDEAGYTLVD 68
                688999**********************986 PP

>> PCC_BT  Propionyl-coenzyme A carboxylase BT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.8e-05      0.11      47      88 ..      24      65 ..       3      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.8e-05
      PCC_BT 47 vkveeaadevevkvdgksvkvssdwklgqplirgtvdgesvt 88
                v   +  ++v+v+++g +v+v+sd +l + ++r++vd+  +t
  KIR64869.1 24 VGAIDGVTNVKVDLEGGRVTVTSDNPLDTETVRAAVDEAGYT 65
                4444556799***************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 531.66
//
Query:       KIR64870.1  [L=336]
Description: hypothetical protein TK50_04600 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0023   18.1   0.1     0.0039   17.4   0.1    1.4  1  DUF748    Domain of Unknown Function (DUF748)
  ------ inclusion threshold ------
      0.037   14.6   0.0        9.7    6.9   0.0    3.7  5  YtkA      YtkA-like


Domain annotation for each model (and alignments):
>> DUF748  Domain of Unknown Function (DUF748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   4.4e-07    0.0039      52     108 ..     180     237 ..     145     254 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4.4e-07
      DUF748  52 lsgavnkggplqisGtlnplp.laselelslkgldLaplspYlaky.lglelesGkLsl 108
                  + +v+++ ++++ Gt++p    +++l++s +g ++++l+pYl++y   ++l++G L  
  KIR64870.1 180 AATTVDGY-TVTLAGTAQPGRaSRLTLTVSRDGTPVTDLQPYLGAYgHLVALRQGDLAY 237
                 45667777.9*******998845556********************7778999999976 PP

>> YtkA  YtkA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         1   9.1e+03      19      40 ..      79     101 ..      75     108 .. 0.70
   2 ?    2.0   0.0     0.036   3.3e+02      55      79 ..     129     154 ..     111     160 .. 0.76
   3 ?    6.9   0.0    0.0011       9.7       3      38 ..     183     217 ..     181     221 .. 0.85
   4 ?   -0.0   0.0      0.16   1.4e+03      71      85 ..     259     273 ..     258     274 .. 0.84
   5 ?   -2.6   0.0      0.95   8.5e+03      31      52 ..     277     296 ..     271     314 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1
        YtkA  19 agentivvtvt.qggkpVedadv 40 
                 a+  ++ ++ t  +g pV+  +v
  KIR64870.1  79 APAGEFAFRITgPDGRPVTRYEV 101
                 56667777755588999987776 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.036
        YtkA  55 mttkvelke.sedGvYeaevnfsmeG 79 
                   t+  +++  ++Gv +a ++f+ +G
  KIR64870.1 129 DGTWRVASPlAGPGVWRAFADFTPAG 154
                 456666677789**********9988 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0011
        YtkA   3 esddlevelvspeepkagent.ivvtvtqggkpVeda 38 
                 ++d+++v+l ++  ++ g ++ +++tv+++g+pV+d 
  KIR64870.1 183 TVDGYTVTLAGT--AQPGRASrLTLTVSRDGTPVTDL 217
                 5799******98..688888549999*********95 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.16
        YtkA  71 aevnfsmeGtWqvql 85 
                 + + f+ +Gt+++ l
  KIR64870.1 259 FSAEFPSAGTYRLYL 273
                 5689********976 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 0.95
        YtkA  31 ggkpVedadvkvefwmpameGm 52 
                  g+ V  a+ +v +  pa  G 
  KIR64870.1 277 HGDTVRTAEFTVVAGTPA--GA 296
                 678888888888888886..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2453.45
//
Query:       KIR64871.1  [L=757]
Description: carbonate dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-52  175.5   3.6    1.8e-51  174.3   3.6    1.7  1  E1-E2_ATPase  E1-E2 ATPase
    7.3e-46  157.1  11.4    1.6e-45  156.0  11.4    1.6  1  Hydrolase     haloacid dehalogenase-like hydrolase
    1.9e-15   57.1   0.1    4.3e-15   55.9   0.1    1.7  1  HMA           Heavy-metal-associated domain
    6.7e-06   26.0   0.5    1.4e-05   25.0   0.5    1.4  1  Hydrolase_3   haloacid dehalogenase-like hydrolase
     0.0095   16.4   1.9      0.021   15.3   0.6    2.2  2  HAD           haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
        7.9    6.8   8.0         10    6.4   1.5    3.7  3  CBP           Fungal calcium binding protein


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.3   3.6   5.9e-55   1.8e-51       4     179 ..     250     425 ..     247     427 .. 0.98

  Alignments for each domain:
  == domain 1  score: 174.3 bits;  conditional E-value: 5.9e-55
                   --EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTT CS
  E1-E2_ATPase   4 pptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkiarl 100
                   ++ + v+rdg e++++++ l +GD  ++++g+++++Dg++ eg++ vd s+LTGEs+pve+  gd+v + tv+  g++++ +t++g dt+l+++arl
    KIR64871.1 250 ARDVAVLRDGVETRVPVDRLAVGDRFVVRPGEKIATDGVVDEGTSAVDASMLTGESVPVEVGPGDTVVGATVNAGGRLVVTATRVGGDTQLAQMARL 346
                   67899******************************************************************************************** PP

                   S--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase 101 veeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrla 179
                   ve+a+  k+ +q+ +d++++v+vp+v+++a+ ++  +l  g +++ a++ a+a+l++a+PcaL+la+p+al++g++r a
    KIR64871.1 347 VEQAQTGKAAVQRLADRISGVFVPIVIALAAGTLGWWLGAGAGPTAAFTAAVAVLIIACPCALGLATPTALLVGTGRGA 425
                   ****************************************************************************988 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.0  11.4   5.4e-49   1.6e-45       1     210 []     443     660 ..     443     660 .. 0.96

  Alignments for each domain:
  == domain 1  score: 156.0 bits;  conditional E-value: 5.4e-49
                 SSEEEEESBTTTBCHHHHHHHHHHHH......CHHHHHHHHHHHHCHHHHHHHHHHHHH..HHHHHHHHHETTTE........HHHHTHHHHHHHH..H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx........xxxxxxxxxxxxx..x RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsa......alalaaaletgsehpigkalvaaakar..sgaltgfatfigrg........ayaigkpewltal..d 81 
                 ++tvv+Dk+GT+ttg++ ++ +++         l la ale +sehpi++a++a a +     ++tgfa ++g g        ++ +g+p++l++   d
  KIR64871.1 443 VDTVVLDKTGTVTTGRMTLVAALPADgedageVLRLAGALEAASEHPIARAVAAGAADAgpLAPVTGFANVEGLGvtgtvdgrELTVGRPRLLRERglD 541
                 68**********************9988888888999999999*********9999999777777********************************** PP

                 CHHHHHHHHHHHHHHCHHHHHH..TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  82 ippdlgaaigsaqsqgrtvall..qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvakpspeg 178
                 +p++++ a+++a+++grt++l   ++ra++v+++ad   vkp  a ava L+a g+  +lltgdn + a+++a ++G          ++e+ a+++p +
  KIR64871.1 542 VPDEVERAVTDAEAAGRTAVLAgwDGRARGVLAVADV--VKPTSAAAVAGLRALGLTPILLTGDNATVARAVAAEVG----------IDEVTAEVLPAD 628
                 *************************************..**************************************..........6666******** PP

                 HHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 179 kvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 kv ++++Lq++++ vam+GDg+nDaaala+A+
  KIR64871.1 629 KVDVVKQLQADGRTVAMIGDGINDAAALAQAD 660
                 *******************************8 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.1   1.5e-18   4.3e-15       2      62 .]      17      75 ..      16      75 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 1.5e-18
         HMA  2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62
                +++ gm+Ca+Caa++ek L +++gV +++v++at ++tV++ ++  ++ ++i+++ k+gy+
  KIR64871.1 17 LAIGGMTCASCAARIEKKLNRMDGV-TATVNYATEKATVSYADDV-TPDDLIATVTKTGYT 75
                6799*********************.***************7666.55************5 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.5   4.6e-09   1.4e-05     195     241 ..     632     678 ..     630     688 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 4.6e-09
                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSE CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdy 241
                  ++k+l+ +   v+ +GDg ND + L +a+lg Amg +++ +++a+d 
   KIR64871.1 632 VVKQLQADGRTVAMIGDGINDAAALAQADLGLAMGTGTDAAIEASDL 678
                  7899**************************************99986 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.6   6.9e-06     0.021      86     187 ..     579     656 ..     543     657 .. 0.75
   2 ?   -3.6   0.0       4.2   1.3e+04       6      49 ..     677     717 ..     677     736 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.9e-06
         HAD  86 ldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDl 184
                  +p   +++a  ra G + ++++g +  ++++++ae+g    +++       +t+e       v  ++kv+++++        +d  +v  +GD+++D 
  KIR64871.1 579 VKPTSAAAVAGLRALGLTPILLTGDNATVARAVAAEVG----IDE-------VTAE-------VLPADKVDVVKQ------LQADGRTVAMIGDGINDA 653
                 4455566666677*************************....666.......6666.......444555666666......444666788889999998 PP

         HAD 185 pll 187
                 ++l
  KIR64871.1 654 AAL 656
                 776 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.2
         HAD   6 DgTLldgdslelllrfllrrgaprlwralreklllalfrellrl 49 
                 D TL++gd   + +  +l r+   +++ ++  l+ a+++  + l
  KIR64871.1 677 DLTLVRGDLTAAVDAIRLSRR---TLAIIKGNLFWAFAYNVAAL 717
                 788999987765555444442...35566666555555555444 PP

>> CBP  Fungal calcium binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1         1     3e+03      40      59 ..      23      41 ..      19      56 .. 0.58
   2 ?    1.4   0.0      0.13   3.8e+02      48      69 ..     535     556 ..     534     563 .. 0.83
   3 ?    6.4   1.5    0.0034        10      37      70 ..     579     612 ..     572     616 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1
         CBP 40 ssAaCaAAlaElgLniladl 59
                + A+CaA ++   Ln +  +
  KIR64871.1 23 TCASCAARIE-KKLNRMDGV 41
                5688887774.456655444 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.13
         CBP  48 laElgLniladlacvataakaa 69 
                 l E gL+++ ++ +++t a+aa
  KIR64871.1 535 LRERGLDVPDEVERAVTDAEAA 556
                 5799*************77776 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0034
         CBP  37 laassAaCaAAlaElgLniladlacvataakaar 70 
                 + ++sAa +A l  lgL +++     at+a+a+ 
  KIR64871.1 579 VKPTSAAAVAGLRALGLTPILLTGDNATVARAVA 612
                 779******************9999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 5095.30
//
Query:       KIR64872.1  [L=57]
Description: CsbD-like protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-17   61.6   9.1    5.4e-17   61.4   9.1    1.0  1  CsbD      CsbD-like


Domain annotation for each model (and alignments):
>> CsbD  CsbD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   9.1     3e-21   5.4e-17       1      52 [.       5      56 ..       5      57 .] 0.98

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 3e-21
        CsbD  1 dkikgkaeqvkGkvKeaaGkaTgdekleaeGkadqlkGkaqqkygdakdaak 52
                dki ++ e+++Gk+Ke+aG+aT+de+leaeG+ dq+k+ ++q+++++kda+k
  KIR64872.1  5 DKIANASEDAAGKLKEGAGRATDDERLEAEGRNDQAKASLKQAGEKIKDAFK 56
                89************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 435.67
//
Query:       KIR64873.1  [L=174]
Description: hypothetical protein TK50_04615 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.4   0.1       0.18   12.0   0.1    1.2  1  DUF1993   Domain of unknown function (DUF1993)
       0.48   10.7   3.5       0.99    9.6   3.5    1.6  1  MLTD_N    MltD lipid attachment motif


Domain annotation for each model (and alignments):
>> DUF1993  Domain of unknown function (DUF1993)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1     2e-05      0.18      65     113 ..      86     134 ..      68     154 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2e-05
                 CHHCT-GS----S.-SSHHHHHHHHHHHHHHHHCS-GGGHCCCCCEEEE CS
     DUF1993  65 arlagkeppsledeektfadlrariaktialLesvdpekldakeekeve 113
                 ++la  +++++ d+e+t ++l++r+++tia L+   +++   +e+ e+e
  KIR64873.1  86 KKLAADSAEATRDKETTPDELNDRLKRTIAGLAGDVRKQAARAEDPEIE 134
                 45666677778999*******************9888888888877777 PP

>> MLTD_N  MltD lipid attachment motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.5   0.00011      0.99      20      34 .]       7      21 ..       2      21 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00011
      MLTD_N 20 isalaaaalLaGCQS 34
                ++ +a +al aGCQS
  KIR64873.1  7 AALVAVLALAAGCQS 21
                45688899999***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1304.06
//
Query:       KIR64874.1  [L=112]
Description: ArsR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-10   41.2   0.3    1.6e-10   40.7   0.3    1.2  1  HTH_5            Bacterial regulatory protein, arsR family
    6.1e-09   35.8   7.0      1e-08   35.1   7.0    1.3  1  HTH_20           Helix-turn-helix domain
    1.1e-07   31.6   6.2    2.1e-07   30.7   6.2    1.5  1  MarR_2           MarR family
    0.00037   20.6   0.1    0.00055   20.1   0.1    1.3  1  HTH_34           Winged helix DNA-binding domain
    0.00082   18.9   0.3     0.0015   18.0   0.3    1.6  1  HTH_24           Winged helix-turn-helix DNA-binding
     0.0011   19.0   2.9     0.0011   19.0   2.9    1.7  2  HTH_28           Helix-turn-helix domain
     0.0017   18.2   0.1     0.0025   17.7   0.1    1.3  1  TrmB             Sugar-specific transcriptional regulator Trm
     0.0021   17.5   0.1     0.0031   17.0   0.1    1.2  1  HTH_CodY         CodY helix-turn-helix domain
     0.0022   17.9   0.0     0.0027   17.7   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0046   16.6   0.5     0.0069   16.1   0.5    1.4  1  RP-C             Replication protein C N-terminal domain
     0.0063   16.4   0.1     0.0094   15.9   0.1    1.4  1  MarR             MarR family
  ------ inclusion threshold ------
      0.012   15.9   0.3       0.02   15.2   0.3    1.4  1  Rrf2             Transcriptional regulator
      0.013   15.9   0.0      0.016   15.6   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
      0.015   15.1   2.0      0.015   15.1   2.0    1.7  2  HTH_23           Homeodomain-like domain
      0.015   14.9   0.0      0.027   14.2   0.0    1.4  1  HTH_41           Helix-turn-helix domain
      0.018   15.3   0.3      0.025   14.9   0.3    1.3  1  HTH_Tnp_1        Transposase
      0.018   14.8   1.5      0.018   14.8   1.5    1.6  1  HTH_8            Bacterial regulatory protein, Fis family
      0.026   14.3   0.3      0.057   13.2   0.1    1.6  2  HTH_10           HTH DNA binding domain
       0.05   13.8   0.0      0.082   13.1   0.0    1.3  1  Fe_dep_repress   Iron dependent repressor, N-terminal DNA bin
      0.077   13.0   0.0       0.12   12.3   0.0    1.5  1  PadR             Transcriptional regulator PadR-like family
      0.089   12.7   0.1       0.12   12.3   0.1    1.3  1  HxlR             HxlR-like helix-turn-helix
       0.11   12.2   2.3       0.22   11.2   2.3    1.6  1  GntR             Bacterial regulatory proteins, gntR family
       0.18   11.7   4.7        1.5    8.6   4.7    2.3  1  HTH_IclR         IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.3     2e-13   1.6e-10       1      46 [.      20      65 ..      20      66 .. 0.97

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 2e-13
                SHHHHHHHHHHTTSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  1 dptRlkILklLaegelcvcelaeelglsqstvShHLkkLreaGLVe 46
                +p Rl+++ +La++ ++v+ la+elg+s++ +  HL+kL  aGLV+
  KIR64874.1 20 NPHRLRVVAALARERAYVSRLARELGISRALLQVHLRKLAAAGLVS 65
                699******************************************7 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   7.0   1.3e-11     1e-08       2      56 ..      13      66 ..      10      70 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1.3e-11
                HHHHHHS-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20  2 qiaeALahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvev 56
                +++  La+P R+r+ +aL  +e + +s la++l++s++ l  HLr+L+ agLv  
  KIR64874.1 13 RVLATLANPHRLRVVAAL-ARERAYVSRLARELGISRALLQVHLRKLAAAGLVSA 66
                57788*************.*********************************976 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   6.2   2.6e-10   2.1e-07       5      62 .]      21      76 ..      12      76 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 2.6e-10
                HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE.ESSSSSSS CS
      MarR_2  5 paqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr.pgpeDkRa 62
                p  +rv aaL+r+      v+ lar+lg+s++ ++ +l++L aaGLv  r + +eD+Ra
  KIR64874.1 21 PHRLRVVAALARER---AYVSRLARELGISRALLQVHLRKLAAAGLVSARlELSEDGRA 76
                77889999999998...6*****************************88889999**97 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1     7e-07   0.00055       2      52 ..      23      72 ..      22      83 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 7e-07
      HTH_34  2 RlavlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYievdkefkg 52
                Rl v++ La  ++a  ++l  +l+++ + L vhl+kL +ag ++ ++e+++
  KIR64874.1 23 RLRVVAALAR-ERAYVSRLARELGISRALLQVHLRKLAAAGLVSARLELSE 72
                8999999985.789*****************************99998876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.3     2e-06    0.0015      22      47 ..      39      64 ..      23      65 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2e-06
      HTH_24 22 eLAerlglSpstvnrrlkrLeeeGlI 47
                 LA++lg+S++ +  +l++L  +Gl+
  KIR64874.1 39 RLARELGISRALLQVHLRKLAAAGLV 64
                69**********************98 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   2.9   1.4e-06    0.0011       1      41 [.      22      63 ..      22      68 .. 0.90
   2 ?   -1.5   0.0       3.7   2.9e+03       4      19 ..      92     107 ..      92     111 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.4e-06
      HTH_28  1 qRleiikllaaGh.svreaArelgisrrtvyrWikryeegGi 41
                +Rl+++ +la+ +  v+ +Arelgisr  +++ ++++ + G+
  KIR64874.1 22 HRLRVVAALARERaYVSRLARELGISRALLQVHLRKLAAAGL 63
                59***********67777*******************99886 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.7
      HTH_28   4 eiikllaaGhsvreaA 19 
                 e+i+++a+  s ++aA
  KIR64874.1  92 EAIRRAAETLSPPDAA 107
                 6788888877776666 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   3.2e-06    0.0025      18      56 ..      30      68 ..      25      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.2e-06
                HHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEES CS
        TrmB 18 lklgpatadeiaeelgvprskvYevLrsLedkGlVerek 56
                l++++a ++ +a+elg++r+  +  Lr+L  +GlV  + 
  KIR64874.1 30 LARERAYVSRLARELGISRALLQVHLRKLAAAGLVSARL 68
                6789999****************************8765 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   3.9e-06    0.0031       7      37 ..      37      67 ..      32      80 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.9e-06
    HTH_CodY  7 askiaDriGitrsvivnaLrkLesaGiiesr 37
                 s++a ++Gi r+ +   LrkL +aG++ +r
  KIR64874.1 37 VSRLARELGISRALLQVHLRKLAAAGLVSAR 67
                6999***********************9988 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.4e-06    0.0027      55     109 ..      33      88 ..      24      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.4e-06
  Acetyltransf_10  55 sllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYeklGFkav 109
                      ++ +V++ +r  Gi++aLl+  ++++  +g+   +l++ ++  a +fYe   F+ +
       KIR64874.1  33 ERAYVSRLARELGISRALLQVHLRKLAAAGLVSaRLELSEDGRAMKFYEVNPFVFT 88 
                      5789*********************989999989**************98777765 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.5   8.8e-06    0.0069      76     104 ..      39      67 ..       9      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.8e-06
        RP-C  76 qLsralglsestlrrhlaaLveaGliirr 104
                 +L+r+lg+s++ l+ hl++L+ aGl+  r
  KIR64874.1  39 RLARELGISRALLQVHLRKLAAAGLVSAR 67 
                 699**********************9876 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.2e-05    0.0094      16      57 ..      33      75 ..      12      77 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-05
                TTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.EEEETTSTT CS
        MarR 16 gplsvseLakklgvskstvtrvldrLekkGlie.RskspeDrR 57
                + ++vs La+ lg+s++ +   l++L  +Gl++ R    eD R
  KIR64874.1 33 ERAYVSRLARELGISRALLQVHLRKLAAAGLVSaRLELSEDGR 75
                567899**************************75888888888 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.3   2.6e-05      0.02      17      58 ..      27      67 ..      12      68 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.6e-05
                HHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        Rrf2 17 LakeeeeepvsseeiaerqnispsylekilakLrkaglvksv 58
                 a+ ++e+ + ++ +a++ +is+  l+  l+kL+ aglv ++
  KIR64874.1 27 VAALARER-AYVSRLARELGISRALLQVHLRKLAAAGLVSAR 67
                34444444.6789**************************875 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.0   2.1e-05     0.016      28      70 ..      33      81 ..      13      86 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.1e-05
                    EEEEE-GGGTTSSHHHHHHHH..TT...SEEEEE.EEEETHH.HHHHHHH CS
  Acetyltransf_7 28 trlaVdpeyrgkGiGraLlea..ae...kgiile.qlelnae.kaikfYe 70
                    +r +V+  +r  Gi raLl++  ++    g+ ++ +lel+++ +a kfYe
      KIR64874.1 33 ERAYVSRLARELGISRALLQVhlRKlaaAGL-VSaRLELSEDgRAMKFYE 81
                    44799***************53521344663.34566775546******9 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   2.0   1.9e-05     0.015       6      45 ..      22      62 ..      21      67 .. 0.81
   2 ?   -2.1   0.0       4.8   3.7e+03      10      24 ..      93     107 ..      92     109 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-05
      HTH_23  6 eRlrillllae.GlsvreIAreLgvsrrTvyrwlkryreeG 45
                +Rlr++ +la+ ++ v++ AreLg+sr  ++  l++ ++ G
  KIR64874.1 22 HRLRVVAALAReRAYVSRLARELGISRALLQVHLRKLAAAG 62
                69**99999988***************98885555555566 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.8
      HTH_23  10 illllaeGlsvreIA 24 
                 +++ +ae ls++++A
  KIR64874.1  93 AIRRAAETLSPPDAA 107
                 566666666666665 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.5e-05     0.027       9      37 ..      37      65 ..      35      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.5e-05
      HTH_41  9 IeelakeleLSvGlvQkALklLeddkais 37
                ++ la el++S+ l Q  L +L +++ +s
  KIR64874.1 37 VSRLARELGISRALLQVHLRKLAAAGLVS 65
                7899**********************997 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.3   3.2e-05     0.025      12      57 ..      23      69 ..      21     101 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.2e-05
   HTH_Tnp_1 12 KariVreslepgksvsevArrhgvspnqLy.kWrrqyregeeaspae 57
                ++r+V+    + + vs++Ar++g+s++ L  + r+++ +g+ ++ +e
  KIR64874.1 23 RLRVVAALARERAYVSRLARELGISRALLQvHLRKLAAAGLVSARLE 69
                6789999999999****************746777776666655554 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   1.5   2.4e-05     0.018      11      41 ..      27      57 ..      25      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.4e-05
                HHHHHHTTT-HHHHHHHHTS-HHHHHHHHHH CS
       HTH_8 11 eaALertgGnkskAArlLGisRrtLyrKLkk 41
                +aAL+r +  +s+ Ar+LGisR  L   L+k
  KIR64874.1 27 VAALARERAYVSRLARELGISRALLQVHLRK 57
                689999999*************988887777 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   7.3e-05     0.057      24      46 ..      35      57 ..      32      60 .. 0.89
   2 ?   -3.0   0.0       8.4   6.5e+03      42      51 ..      92     101 ..      91     102 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.3e-05
      HTH_10 24 vtlkeLAkelGIskstlsehLrk 46
                + ++ LA elGIs++ l+ hLrk
  KIR64874.1 35 AYVSRLARELGISRALLQVHLRK 57
                66789*****************8 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.4
      HTH_10  42 ehLrkaeskl 51 
                 e +r+a ++l
  KIR64874.1  92 EAIRRAAETL 101
                 5678887665 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00011     0.082      23      53 ..      35      65 ..      24      68 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
                    B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 23 vktkdlaerLnvspssVsemlkkLekdGyve 53
                    + +++la++L++s +  +  l+kL+ +G+v 
      KIR64874.1 35 AYVSRLARELGISRALLQVHLRKLAAAGLVS 65
                    45689************************96 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00015      0.12      37      66 ..      54      83 ..      26      85 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
                HHHHHHHTTSEEEEEE-STSSS-EEEEEES CS
        PadR 37 aLkrLekeglveseweesgegpprkyYrlT 66
                 L++L + glv+++ e s++g++ k+Y+++
  KIR64874.1 54 HLRKLAAAGLVSARLELSEDGRAMKFYEVN 83
                699*************************98 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00015      0.12       8      52 ..      24      67 ..      11      84 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
                HHHHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEE CS
        HxlR  8 llilvellkgkkRfselkralpkisqkmLaqrLreLeqdgliere 52
                l ++ +l + +   s l+r+l +is+ +L  +Lr+L + gl++++
  KIR64874.1 24 LRVVAALARERAYVSRLAREL-GISRALLQVHLRKLAAAGLVSAR 67
                568888888999999******.9******************9865 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.3   0.00028      0.22      27      57 ..      37      67 ..      25      69 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00028
                HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        GntR 27 ereLaaefgVsrttvReALrrLeaeglverr 57
                ++ La e+g+sr  ++  Lr+L+a+glv +r
  KIR64874.1 37 VSRLARELGISRALLQVHLRKLAAAGLVSAR 67
                568*************************976 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.7     0.002       1.5       6      49 ..      24      65 ..       9      67 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.002
                HHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  6 laiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyve 49
                l++  ala+++    +s lAr++g++++    +L+ L   G+v 
  KIR64874.1 24 LRVVAALARERAY--VSRLARELGISRALLQVHLRKLAAAGLVS 65
                5777888888886..************************99995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 866.00
//
Query:       KIR64875.1  [L=122]
Description: hypothetical protein TK50_04640 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-15   57.6   0.1    1.5e-15   57.4   0.1    1.1  1  YCII      YCII-related domain
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.022   14.8   0.0    1.3  1  Ntox3     Bacterial toxin 3


Domain annotation for each model (and alignments):
>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.1   1.7e-19   1.5e-15       1      93 [.       1     116 [.       1     118 [. 0.96

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 1.7e-19
                 EEEEEEEEE-TTGH.....HHHHHHHHHHHHHHHHHHHTTGEEEE................EEEECSCSSSSCGGCEEEEEEEEEESSHHHHHHHHHT- CS
        YCII   1 Mlyvilaydkpasl.....eeraallaahlayleelkkeGvllaa................GpklvidGpfaetkeqlgGfyiveaadldeaieiaard 78 
                 M+y++l+ ++p+ +     + raal  +  ++++el ++G l+ +                 + +v+dGpf+e keq++G++ v++++ ++a eiaa+ 
  KIR64875.1   1 MKYMLLIWNRPGFVdgmseQDRAALFGEVDEIMRELTASGELVGGqaladpsqtrtarlagDRVEVTDGPFMESKEQFAGYLTVDCESVERAAEIAAGW 99 
                 9*****************9999**************************************667789********************************* PP

                 HHHHT..TEEEEEEEEE CS
        YCII  79 Pfvea..Glveerevke 93 
                 P v    G+ e+r++++
  KIR64875.1 100 PDVVRgfGVLEVRPIMD 116
                 ***99999******986 PP

>> Ntox3  Bacterial toxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.5e-06     0.022      68     119 ..      48     100 ..      33     106 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.5e-06
       Ntox3  68 lrdpetara.lgeparveasegprveararfvgdhkvickevthradgdaqvp 119
                 l dp  +r+      rve ++gp +e + +f g   v c  v + a+  a+ p
  KIR64875.1  48 LADPSQTRTaRLAGDRVEVTDGPFMESKEQFAGYLTVDCESVERAAEIAAGWP 100
                 677765554144567*************************9999888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 926.59
//
Query:       KIR64876.1  [L=151]
Description: anti-sigma regulatory factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-05   25.3   0.0    1.5e-05   24.9   0.0    1.2  1  HATPase_c_2  Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   8.4e-10   1.5e-05       7     119 ..      26     132 ..      21     139 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 8.4e-10
  HATPase_c_2   7 hvrtvrevaeavlrr.aglseelld....eirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeepkeslkegG 99 
                  ++r +r  ++++l   a  + e+ld    +i l+++E+ tNa  h+ +     p +vrl +d++ + + vaD+     pe ++         +l  gG
   KIR64876.1  26 ELRGLRASLHEALTGhALAEGEELDdipeRIVLVATELATNALLHGLP-----PTTVRLLRDDDLFILDVADHDLTTVPELADT-------RPLGAGG 111
                  677788888888554377777777788889*****************8.....6779999*************99977765444.......57899** PP

  HATPase_c_2 100 rGlalikglvDevey.dgegn 119
                  rGl l ++++ +v +   eg+
   KIR64876.1 112 RGLQLARAFSLDVGWyATEGT 132
                  *************77655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 966.66
//
Query:       KIR64877.1  [L=261]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-12   48.1   0.0    1.8e-12   47.7   0.0    1.2  1  Methyltransf_21  Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   9.8e-17   1.8e-12       1     133 [.      51     180 ..      51     205 .. 0.66

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 9.8e-17
  Methyltransf_21   1 dvGanigvwdsfanltarlcggggevlaiEPvpns....lpkfeklranll..tlavgndvglyelivegksg..gkyfpfavgdtngfstssv 86 
                      d+Ga++g   ++ +++ r    g++v+a+EP+p+     +  f   + n++  + avg d g + l +  ++   ++   + + + +  s+ s 
       KIR64877.1  51 DIGAHVG--GRVRTWR-R---LGARVVAVEPQPDClralR-LFFGRDPNVTivPEAVGADAGRARLALSTATPtvSTMSTEWIESVTADSSFSG 137
                      9*****9..6666555.3...699**********666632.22222233335555566555555544433322332222222222222222222 PP

  Methyltransf_21  87 lggedaryievpvvtldsfleeikksridllkiDvEGaElevLeGaq 133
                         +  r +ev+vvtld++   +  +++ ++kiDvEG+E +vL G +
       KIR64877.1 138 --VRWDRSVEVDVVTLDDLVAAH--GVPAFCKIDVEGFEVDVLSGLS 180
                      ..5799*************6666..6*****************8844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1924.84
//
Query:       KIR64878.1  [L=1052]
Description: hypothetical protein TK50_04680 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-24   84.9  36.0    5.9e-07   30.2   6.7    7.0  5  Big_7     Bacterial Ig domain
    6.1e-09   35.7   0.1     0.0044   16.9   0.0    4.0  4  Y_Y_Y     Y_Y_Y domain
    3.9e-06   27.1  10.0      0.048   13.9   0.8    5.1  4  DUF5122   Domain of unknown function (DUF5122) beta-propeller
    7.3e-05   23.0   0.0       0.82    9.9   0.0    4.4  5  DUF4625   Domain of unknown function (DUF4625)
     0.0022   17.7   0.1        2.5    7.9   0.0    3.2  3  Big_3_4   Domain of unknown function
  ------ inclusion threshold ------
        1.1    9.1  18.6        5.2    7.0   0.1    5.8  5  PKD       PKD domain


Domain annotation for each model (and alignments):
>> Big_7  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.5     2e-08     6e-05       3      69 ..     463     549 ..     462     550 .. 0.81
   2 !    9.5   1.7   0.00055       1.7       1      39 [.     579     616 ..     579     675 .. 0.74
   3 !   30.2   6.7     2e-10   5.9e-07       1      70 []     693     793 ..     693     793 .. 0.86
   4 !    9.2   0.3   0.00069       2.1      18      68 ..     840     910 ..     823     912 .. 0.67
   5 !   29.0   0.9   4.5e-10   1.4e-06       7      70 .]     948    1031 ..     946    1031 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2e-08
                 EEEEE--TT--EB.TSEEEEEEEEE-SS-EEEEEEEETTEE.......................EEEE-SSSEEEEEE--...SEEEEEE CS
       Big_7   3 vtitsPangatvs.ggtvtisasAsddggvskVefyvdgtl.g.....................lgtdtsapysltwtttaltagthtlt 69 
                 +ti++P +g + + +g++ti+++A+ ++gv+kV++ +++   +                     + + ts+ +sl+++    + g+++++
  KIR64878.1 463 TTIDTPIEGRVKPaNGSFTIEGQATAPSGVKKVQVEIQNRGsKkylqpdlktwgssavivstlaSPNATSTMWSLAVSL---PVGEYQIQ 549
                 69*********************************99977644678899999999999976666556666666666665...57888886 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00055
                 XEEEEEE--TT--EBTSEEEEEEEEE-SS-EEEEEEEET CS
       Big_7   1 PtvtitsPangatvsggtvtisasAsddggvskVefyvd 39 
                 Pt+++++Pa+g   + +t+  +++A+dd gv+  +++  
  KIR64878.1 579 PTTKFSAPAAGLLAT-KTFVATGTATDDKGVNALTYSFR 616
                 9*************9.***************99998744 PP

  == domain 3  score: 30.2 bits;  conditional E-value: 2e-10
                 XEEEEEE--TT-........-EB.TSEEEEEEEEE-SS-EEEEEEEETTEE.......................EEEE-SSSEEEEEE--...SEEEEE CS
       Big_7   1 PtvtitsPanga........tvs.ggtvtisasAsddggvskVefyvdgtl.g.....................lgtdtsapysltwtttaltagthtl 68 
                 Ptv+it+Pa+ +        tv  g+++t+s++Asddg+ ++Ve+y+ +t+                        ++ ++a y++++tt+alt g +  
  KIR64878.1 693 PTVAITAPAAMTpptaagpvTVApGSPLTFSGTASDDGTLKSVEVYLRNTTtReslaadgtwgpdavaayhrvsPTNLNAASYNWSFTTAALTPGIYDF 791
                 9********9996666777777777799******************99998558999999999********9844444669************999977 PP

                 EE CS
       Big_7  69 tV 70 
                 +V
  KIR64878.1 792 RV 793
                 66 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00069
                 EEEEEEEEE-SS-EEEEEEEETTEE.......................EEEE-SSSEEEEEE--...SEEEEE CS
       Big_7  18 tvtisasAsddggvskVefyvdgtl.g.....................lgtdtsapysltwtttaltagthtl 68 
                  +++ ++A+dd gv+ V + + +   g                     +   ts+ ++l+++ +  t g++++
  KIR64878.1 840 HLNLAGTATDDKGVQGVRVALRDLDtGryvqpngtmaasfatvnatlaSPGATSTAFTLSVDLP--TKGEYSV 910
                 56899**************988666455655655555566555555544444555566666655..5666665 PP

  == domain 5  score: 29.0 bits;  conditional E-value: 4.5e-10
                  E--TT--EBTSEEEEEEEEE-SS-EEEEEEEETTEE.....................EEEE-SSSEEEEEE-.............-...SEEEEEEE CS
       Big_7    7 sPangatvsggtvtisasAsddggvskVefyvdgtl.g...................lgtdtsapysltwtt.............taltagthtltV 70  
                  sP+nga++  + + +++ A dd+g+skVe+ + +   +                   l             t             + ++ag +t++V
  KIR64878.1  948 SPTNGAVFGDSRIVVTGRAVDDVGMSKVEVQIVNGAgQgmnssgafgggsapwiatfL-------------TspgspgsnfaytsPVVPAGAYTISV 1031
                  9********99*******************8776664568888855555555554444.............55555555555533779*******98 PP

>> Y_Y_Y  Y_Y_Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.067     2e+02      36      58 ..     541     563 ..     539     570 .. 0.79
   2 !   11.3   0.0   8.4e-05      0.25      29      52 ..     775     800 ..     767     810 .. 0.81
   3 ?   -1.9   0.0       1.1   3.4e+03      38      56 ..     905     923 ..     891     926 .. 0.83
   4 !   16.9   0.0   1.5e-06    0.0044      35      65 ..    1021    1051 ..     997    1052 .] 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.067
                 --SEEEEEEEEEEETTS-B-SS- CS
       Y_Y_Y  36 lppGdYtlkVkakdndgqwnydi 58 
                 lp G+Y++++k+  + +++ + +
  KIR64878.1 541 LPVGEYQIQAKTFGRTSSETDAT 563
                 99********9988877777765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 8.4e-05
                 ...EEEEES--SEEEEEEEEEEETTS CS
       Y_Y_Y  29 q..easytnlppGdYtlkVkakdndg 52 
                 +  +++   l pG Y ++V+a+dn+g
  KIR64878.1 775 YnwSFTTAALTPGIYDFRVRATDNLG 800
                 334778889***************97 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.1
                 SEEEEEEEEEEETTS-B-S CS
       Y_Y_Y  38 pGdYtlkVkakdndgqwny 56 
                  G+Y +++ a d  gq ++
  KIR64878.1 905 KGEYSVEAWAVDTAGQQDS 923
                 7*********999998765 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 1.5e-06
                  S--SEEEEEEEEEEETTS-B-SS-EEEEEEE CS
       Y_Y_Y   35 nlppGdYtlkVkakdndgqwnyditslsfti 65  
                    p+G Yt+ V+a dn+gq ++  t++s+t+
  KIR64878.1 1021 VVPAGAYTISVRAVDNYGQLQQPPTTISVTV 1051
                  479***************************9 PP

>> DUF5122  Domain of unknown function (DUF5122) beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.018        55       5      24 ..      75      94 ..      74      95 .. 0.89
   2 !   11.2   0.1   0.00011      0.34       2      28 ..     127     154 ..     126     159 .. 0.88
   3 !   13.9   0.8   1.6e-05     0.048       6      36 .]     181     212 ..     177     212 .. 0.95
   4 ?   -2.1   0.0       1.6   4.9e+03       7      20 ..     351     364 ..     350     366 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.018
     DUF5122  5 KIlVaGsftsyngssdfalv 24
                ++++aGsft +++++++al+
  KIR64878.1 75 RVFIAGSFTGIANVGQTALA 94
                789******88**9999998 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00011
     DUF5122   2 pDGKI.lVaGsftsyngssdfalvRLna 28 
                 pDG+  +VaG+f++++g +   ++RL++
  KIR64878.1 127 PDGSAlYVAGTFNTVGGLTKRKVARLDP 154
                 6777669*******************98 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 1.6e-05
     DUF5122   6 IlVaGsftsyngssdfalvRLna.DGslDtsF 36 
                 ++V+G ft++n+ ++++l+ Ln+  G++D++F
  KIR64878.1 181 VYVGGQFTKINSTNRTGLAALNPtTGAVDAGF 212
                 79*****************************9 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1.6
     DUF5122   7 lVaGsftsyngssd 20 
                 +V+G f+++ ++++
  KIR64878.1 351 YVGGHFSWQESPTA 364
                 8*****98766665 PP

>> DUF4625  Domain of unknown function (DUF4625)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.2   3.6e+03      26      59 ..     468     501 ..     456     506 .. 0.77
   2 ?   -2.5   0.0       1.9   5.8e+03     105     123 ..     658     676 ..     635     683 .. 0.78
   3 !    9.9   0.0   0.00028      0.82      12     123 ..     690     803 ..     679     809 .. 0.69
   4 !    4.9   0.0    0.0095        28      38     124 ..     841     923 ..     828     928 .. 0.82
   5 ?    1.8   0.0     0.089   2.7e+02     104     131 ..    1022    1049 ..     947    1050 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.2
     DUF4625  26 peeeevlkiGetlhfeaklsdnealasykvdihn 59 
                 p e++v     ++++e + ++   +++++v+i+n
  KIR64878.1 468 PIEGRVKPANGSFTIEGQATAPSGVKKVQVEIQN 501
                 5566666666779999999999*********965 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.9
     DUF4625 105 eaGdYhlvirvtDasGnet 123
                 ++G++ ++ +++D +G + 
  KIR64878.1 658 TEGEWRMTATAIDTAGQSD 676
                 479999********99875 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00028
     DUF4625  12 tekPvidllevsa....epeeeevlkiGetlhfeaklsdnealasykvdihnnfDhhshsseakeg....ekewsfeksydlsgskkeyelheeieiPa 102
                   +P++ +++  a    +     +++ G+ l+f  + sd+  l+s++v + n     +++s a++g    +  +++++    + + ++++ + +++  a
  KIR64878.1 690 GVAPTVAITAPAAmtppTAAGPVTVAPGSPLTFSGTASDDGTLKSVEVYLRNT---TTRESLAADGtwgpDAVAAYHRVS--PTNLNAASYNWSFTT-A 782
                 556666666433343323455567889***********************443...344444444445555555555554..455567777777775.6 PP

     DUF4625 103 daeaGdYhlvirvtDasGnet 123
                   ++G Y++ +r+tD+ G  t
  KIR64878.1 783 ALTPGIYDFRVRATDNLGLVT 803
                 799************999765 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0095
     DUF4625  38 lhfeaklsdnealasykvdihnnfDhhshsseakegekewsfeksydlsgskkeyelheeieiPadaeaGdYhlvirvtDasGnete 124
                 l++  + +d++ ++ + v +  + D     + +     +++  +   +s +++++ ++ +++ P+   +G+Y +  +++D +G +  
  KIR64878.1 841 LNLAGTATDDKGVQGVRVAL-RDLDTGRYVQPNGTMAASFATVNATLASPGATSTAFTLSVDLPT---KGEYSVEAWAVDTAGQQDS 923
                 45666788999999999999.77787777777766677777777777888999***********6...7**************9875 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.089
     DUF4625  104 aeaGdYhlvirvtDasGneteesreiki 131 
                  ++aG Y + +r++D+ G  ++  ++i++
  KIR64878.1 1022 VPAGAYTISVRAVDNYGQLQQPPTTISV 1049
                  679**************99888887776 PP

>> Big_3_4  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0     0.006        18      23      48 ..     649     674 ..     644     677 .. 0.92
   2 !    7.9   0.0   0.00083       2.5      25      49 ..     897     921 ..     890     929 .. 0.89
   3 ?   -0.5   0.0      0.35     1e+03      21      48 ..    1012    1039 ..    1008    1044 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.006
     Big_3_4  23 iWnvpvPldedGeyvvellaedeaGn 48 
                  W+v v l ++Ge+ +   a d aG 
  KIR64878.1 649 TWQVEVTLPTEGEWRMTATAIDTAGQ 674
                 6***********************96 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00083
     Big_3_4  25 nvpvPldedGeyvvellaedeaGnq 49 
                  ++v l ++Gey ve  a d aG q
  KIR64878.1 897 TLSVDLPTKGEYSVEAWAVDTAGQQ 921
                 5678999****************99 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.35
     Big_3_4   21 GdiWnvpvPldedGeyvvellaedeaGn 48  
                  G  +  + P+   G y + + a d+ G 
  KIR64878.1 1012 GSNFAYTSPVVPAGAYTISVRAVDNYGQ 1039
                  666677889999************9885 PP

>> PKD  PKD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.7     0.074   2.2e+02      27      69 ..     612     675 ..     591     677 .. 0.72
   2 ?    2.7   0.1     0.037   1.1e+02       2      24 ..     708     731 ..     707     747 .. 0.86
   3 ?    6.2   0.1     0.003         9      50      71 .]     783     804 ..     767     804 .. 0.87
   4 ?   -0.6   0.6       0.4   1.2e+03      20      59 ..     888     911 ..     869     935 .. 0.45
   5 ?    7.0   0.1    0.0017       5.2      33      70 ..     994    1041 ..     986    1042 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.074
                 EEEEE--SS.....................--EEEEETTEEEEEE-SSEEEEEEEEEE-SS-EE CS
         PKD  27 tysWdfgdg.....................svvqvlseptvthtYlspGeYeVtvtasnavgsa 69 
                 tys+ + d                        ++v++   v  t +++Ge   t ta +++g +
  KIR64878.1 612 TYSFRTPDNrylqddgtvapvyntfrtepdVIGAVSTTWQVEVTLPTEGEWRMTATAIDTAGQS 675
                 5666666666666666666666666666666778888888999999*************99987 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.037
                 E---S--BSSEEEEEEEES..-SS CS
         PKD   2 sasptvlvpgatvaftaav.pdga 24 
                 +a+p  ++pg +++f+++  +dg+
  KIR64878.1 708 AAGPVTVAPGSPLTFSGTAsDDGT 731
                 5788899***********988876 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.003
                 E-SSEEEEEEEEEE-SS-EEEE CS
         PKD  50 YlspGeYeVtvtasnavgsata 71 
                  l+pG Y  +v+a++++g++t+
  KIR64878.1 783 ALTPGIYDFRVRATDNLGLVTT 804
                 578****************986 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.4
                 S.-SS-SEEEEE--SS--EEEEETTEEEEEE-SSEEEEEE CS
         PKD  20 vpdganvtysWdfgdgsvvqvlseptvthtYlspGeYeVt 59 
                 +p +++++++  +                  ++ GeY V 
  KIR64878.1 888 SPGATSTAFTLSV----------------DLPTKGEYSVE 911
                 4444444444222................22223333333 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0017
                  -SS......--EEEEETTEEEEEE-S....SEEEEEEEEEE-SS-EEE CS
         PKD   33 gdg......svvqvlseptvthtYls....pGeYeVtvtasnavgsat 70  
                  g g      +  ++  +p  +  Y+s    +G Y+++v+a +++g ++
  KIR64878.1  994 GGGsapwiaTFLTSPGSPGSNFAYTSpvvpAGAYTISVRAVDNYGQLQ 1041
                  555555555444455555555555555588***************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1052 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 7049.79
//
Query:       KIR64879.1  [L=204]
Description: hypothetical protein TK50_04685 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1435.68
//
Query:       KIR64880.1  [L=267]
Description: multidrug ABC transporter ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-27   96.9   0.0    1.9e-27   96.4   0.0    1.2  1  ABC_tran    ABC transporter
    1.9e-11   44.3   0.0    8.7e-05   22.5   0.0    2.1  2  AAA_21      AAA domain, putative AbiEii toxin, Type IV TA sys
     0.0001   22.9   0.0    0.00016   22.2   0.0    1.1  1  AAA_23      AAA domain
    0.00036   20.3   0.7    0.00055   19.7   0.2    1.8  2  AAA_30      AAA domain
    0.00044   19.9   0.2    0.00088   19.0   0.2    1.5  1  AAA_29      P-loop containing region of AAA domain
     0.0013   18.2   0.0      0.087   12.2   0.0    2.1  2  SMC_N       RecF/RecN/SMC N terminal domain
     0.0029   17.8   0.0      0.014   15.6   0.0    2.1  1  AAA_33      AAA domain
     0.0043   16.8   0.0          3    7.5   0.0    2.0  2  AAA_15      AAA ATPase domain
  ------ inclusion threshold ------
      0.013   15.0   0.3      0.026   14.1   0.1    1.5  2  AAA_27      AAA domain
      0.017   15.5   0.1      0.029   14.8   0.1    1.6  1  AAA_16      AAA ATPase domain
      0.021   14.6   0.0      0.038   13.8   0.0    1.3  1  MukB        MukB N-terminal
      0.046   14.0   0.1       0.14   12.4   0.1    1.8  2  AAA_28      AAA domain
      0.058   12.2   0.2       0.97    8.2   0.1    2.0  2  ABC_ATPase  Predicted ATPase of the ABC class
      0.063   13.7   0.1       0.13   12.7   0.1    1.5  1  AAA         ATPase family associated with various cellular ac
       0.13   12.5   0.1       0.44   10.8   0.1    2.0  1  AAA_22      AAA domain
       0.14   11.8   0.0       0.23   11.0   0.0    1.4  1  cobW        CobW/HypB/UreG, nucleotide-binding domain
       0.14   12.2   0.1       0.25   11.3   0.1    1.4  1  TsaE        Threonylcarbamoyl adenosine biosynthesis protein 
       0.19   11.6   0.1       0.34   10.8   0.1    1.3  1  NACHT       NACHT domain
       0.41    8.1   0.6       0.55    7.7   0.6    1.1  1  DUF3584     Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.0     2e-30   1.9e-27      13     136 ..      45     178 ..      34     179 .. 0.90

  Alignments for each domain:
  == domain 1  score: 96.4 bits;  conditional E-value: 2e-30
                 EEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTC.....HHHHHHHSTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxx.....xxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren...........esdee.....iekalsklgl 94 
                 +++++G+nGaGK+tL+++la  ++p+ G++ l g++++   +l+++r+++g+lpq+  + p+ tvre            +         +++a++++gl
  KIR64880.1  45 VHGLLGPNGAGKTTLMRALATVVRPAGGRLDLLGENISGrADLRRVRRRLGYLPQHFGFYPRFTVREFveymawlkempK---AdipgaVQRAVDRVGL 140
                 679**********************************9989****************************98887765431...1566779999999999 PP

                 GGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  95 kelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++ +d ++    ++LSgG+ +r  +a+a++++p+llllDEpt
  KIR64880.1 141 TDRADARM----KTLSGGMVRRAGIAQAIVNDPELLLLDEPT 178
                 99888888....*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   4.5e-07   0.00043       2      22 ..      46      66 ..      45      93 .. 0.77
   2 !   22.5   0.0   9.2e-08   8.7e-05     165     297 ..     111     207 ..      76     210 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.5e-07
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                 +l GpNg+GK++L++al  +
  KIR64880.1 46 HGLLGPNGAGKTTLMRALATV 66
                579***************543 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 9.2e-08
      AAA_21 165 rigllnifadyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllli 263
                 ++  + ++ +++++a++++ +qr v+++ l +  +  ++                                 lS G+ r ++++ a+  ++    lll+
  KIR64880.1 111 EFVEYMAWLKEMPKADIPGAVQRAVDRVGLTDRADARMK--------------------------------TLSGGMVRRAGIAQAIVNDP---ELLLL 174
                 555555555666667777777777777777776666665................................67*******99999999999...9**** PP

      AAA_21 264 DEpEngLHPkllrrllell.kelsrngaQviltTH 297
                 DEp  gL+P+    + ell ++ s  ++ v+++TH
  KIR64880.1 175 DEPTVGLDPEQRLDFRELLrDIGS--DSCVLVSTH 207
                 *******************55555..5999****9 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.7e-07   0.00016      15      41 ..      39      65 ..      32      69 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.7e-07
      AAA_23 15 idFskgltlItGpNGaGKTTildAikl 41
                + ++ g+  + GpNGaGKTT+++A+  
  KIR64880.1 39 LALGTGVHGLLGPNGAGKTTLMRALAT 65
                556899999***************975 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   5.8e-07   0.00055      19      54 ..      44      79 ..      36     204 .. 0.78
   2 ?   -2.1   0.0       2.8   2.7e+03     116     132 ..     224     240 ..     199     264 .. 0.58

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.8e-07
      AAA_30 19 rvavltGpAGtGKttalkalreaweaaggrviglAp 54
                 v+ l Gp G+GKtt+++al+ +++ aggr+ +l  
  KIR64880.1 44 GVHGLLGPNGAGKTTLMRALATVVRPAGGRLDLLGE 79
                488999*********************866655543 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.8
      AAA_30 116 gakvilvGDerQlasVe 132
                 + +++  G ++Qla+ +
  KIR64880.1 224 EGRLVWQGTTAQLAAQG 240
                 45666666666666644 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2   9.4e-07   0.00088      24      50 ..      45      71 ..      34      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.4e-07
      AAA_29 24 atlltGpsGsGKSTllDAiqalLvpak 50
                ++ l Gp+G+GK+Tl+ A++++  pa 
  KIR64880.1 45 VHGLLGPNGAGKTTLMRALATVVRPAG 71
                56699*****************99975 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   9.2e-05     0.087      16      45 ..      35      64 ..      21      70 .. 0.79
   2 ?    3.9   0.0     0.032        30     160     204 ..     170     214 ..     130     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.2e-05
                EEEEEETTSSEEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 16 ktvilpfsksftaivGpNGSGKsnlldAil 45
                +  +l + +++  ++GpNG+GK+ l+ A+ 
  KIR64880.1 35 NGLDLALGTGVHGLLGPNGAGKTTLMRALA 64
                5566778889999**************986 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.032
                 SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 160 plyllDeidaaLDeknvkkvaellkeksknaQfivislreemlek 204
                  l llDe    LD +++  + ell+   +++ ++v ++  e ++ 
  KIR64880.1 170 ELLLLDEPTVGLDPEQRLDFRELLRDIGSDSCVLVSTHLVEDVAV 214
                 5889********************************997665555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.5e-05     0.014       4     106 ..      48     206 ..      45     210 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.5e-05
      AAA_33   4 lvGlpGsGKstlaerl...lkklg..avllssdt................................................lrrrlfg....tdqqsk 45 
                 l G++G+GK+tl + l   +++ g    ll +++                                                + +r +     td+ + 
  KIR64880.1  48 LLGPNGAGKTTLMRALatvVRPAGgrLDLLGENIsgradlrrvrrrlgylpqhfgfyprftvrefveymawlkempkadipgAVQRAVDrvglTDRADA 146
                 67*************955455555888888888899999999999999999999999998888888888855555555555522222221111222222 PP

      AAA_33  46 tdytrvldrlyqilnelarkalsagrnvildat..nlsrrerarflklarrlgvpvrivvvet 106
                  + ++++  + ++  ++a+        ++ld +   l++++r +f++l+r++g  +++v v+t
  KIR64880.1 147 -RMKTLSGGMVRRA-GIAQAIVNDPELLLLDEPtvGLDPEQRLDFRELLRDIG-SDSCVLVST 206
                 .1222222233332.44444444555556666655667999999999999999.889998877 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0035       3.3      28      44 ..      48      64 ..      38      70 .. 0.89
   2 !    7.5   0.0    0.0031         3     321     364 ..     166     207 ..     145     207 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0035
      AAA_15 28 liGkNnsGKSsileald 44
                l G+N++GK+++++al 
  KIR64880.1 48 LLGPNGAGKTTLMRALA 64
                67*************95 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0031
      AAA_15 321 eeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                  +++ +ll++EP + L p++   + +ll+++ +d+   v+++TH
  KIR64880.1 166 VNDPELLLLDEPTVGLDPEQRLDFRELLRDIGSDS--CVLVSTH 207
                 46899******************************..5****** PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.8e-05     0.026      21      47 ..      39      64 ..      29      67 .. 0.83
   2 ?   -3.7   0.0       8.1   7.6e+03      33      50 ..     241     258 ..     228     263 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.8e-05
      AAA_27 21 fsaeeadlhliyGpNEAGKstalrAis 47
                +    +++h ++GpN AGK+t++rA+ 
  KIR64880.1 39 LA-LGTGVHGLLGPNGAGKTTLMRALA 64
                44.4678999***************97 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8.1
      AAA_27  33 GpNEAGKstalrAisdll 50 
                 G+  AG s+a r++s+ll
  KIR64880.1 241 GTGDAGDSAAERGYSALL 258
                 666788888877777776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1     3e-05     0.029      29      60 ..      48      85 ..      28     220 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3e-05
      AAA_16 29 lsGesGvGKsslvrellralekdggif......lrgkc 60
                l G+ G GK++l+r+l++ ++ +gg +      ++g++
  KIR64880.1 48 LLGPNGAGKTTLMRALATVVRPAGGRLdllgenISGRA 85
                79***************877777555552222233333 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     4e-05     0.038      27      58 ..      44      75 ..      37      97 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4e-05
                HHHHHHS--SHHHHHHHHHHHHHHS--TTT-- CS
        MukB 27 lvttlsGgnGaGksttmaafvtaliPdlsllh 58
                 v  l G nGaGk+t m a+ t++ P   +l 
  KIR64880.1 44 GVHGLLGPNGAGKTTLMRALATVVRPAGGRLD 75
                578899*****************999877776 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00015      0.14       4      21 ..      48      65 ..      46      80 .. 0.88
   2 ?   -2.9   0.0       7.3   6.8e+03     131     156 ..     142     167 ..     119     170 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00015
      AAA_28  4 itGgestGKTtlleaLaa 21
                ++G+ ++GKTtl++aLa 
  KIR64880.1 48 LLGPNGAGKTTLMRALAT 65
                68**************95 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.3
      AAA_28 131 leereaiderlrealrelgipviivp 156
                 +++ ++++++   ++r++gi  +iv+
  KIR64880.1 142 DRADARMKTLSGGMVRRAGIAQAIVN 167
                 45556788888888888888877774 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1     0.001      0.97     236     267 ..      33      66 ..      20      70 .. 0.78
   2 ?    1.9   0.0     0.082        78     319     350 ..     147     178 ..     140     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.001
                 EEEEE..EE-SSEEEEEE-TTSSHHHHHHHHHHC CS
  ABC_ATPase 236 kvsGm..gipkGvtlIvGggfhGKsTLLeAlekG 267
                 +v+G+  ++ +Gv  + G++  GK+TL++Al++ 
  KIR64880.1  33 AVNGLdlALGTGVHGLLGPNGAGKTTLMRALATV 66 
                 567751145677*******************875 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.082
                 EESS--HHHHHHHHHHHHHHTT-SEEEEEGGG CS
  ABC_ATPase 319 stedASGStsqAanimealeagakllLiDEDt 350
                  +++ SG +   a i++a+ ++ +llL+DE t
  KIR64880.1 147 RMKTLSGGMVRRAGIAQAIVNDPELLLLDEPT 178
                 566779************************65 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00014      0.13       3      20 ..      48      65 ..      47      88 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00014
                EESSTTSSHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavak 20
                l Gp G GKT+l++a+a+
  KIR64880.1 48 LLGPNGAGKTTLMRALAT 65
                78**************97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00047      0.44      10      27 ..      48      65 ..      42     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00047
      AAA_22 10 vtGesGtGKTtllrrlle 27
                + G+ G+GKTtl+r l+ 
  KIR64880.1 48 LLGPNGAGKTTLMRALAT 65
                67************9975 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00024      0.23       2      25 ..      45      70 ..      44      96 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00024
                EEEEEESTTCCHHHHHHHHH..CT-- CS
        cobW  2 vtvltGflGsGKTtLlnhll..enra 25
                v +l G+ G+GKTtL+++l    + a
  KIR64880.1 45 VHGLLGPNGAGKTTLMRALAtvVRPA 70
                56789************987554445 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00027      0.25      20      41 ..      44      65 ..      19      70 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00027
                EEEEEEESTTSSHHHHHHHHHH CS
        TsaE 20 dvilLeGdLGaGKTtlvrglak 41
                 v  L G+ GaGKTtl+r+la 
  KIR64880.1 44 GVHGLLGPNGAGKTTLMRALAT 65
                34679999***********987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00036      0.34       5      22 ..      48      65 ..      45      72 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00036
                EEC-TTTCHHHHHHHHHH CS
       NACHT  5 lqGeaGsGKTtLlqklal 22
                l G++G GKTtL++ la+
  KIR64880.1 48 LLGPNGAGKTTLMRALAT 65
                68*************997 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.6   0.00059      0.55      22      36 ..      48      62 ..      33      64 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00059
     DUF3584 22 ieGtNaaGKTtLlrL 36
                + G N+aGKTtL+r 
  KIR64880.1 48 LLGPNGAGKTTLMRA 62
                5688**********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1906.44
//
Query:       KIR64881.1  [L=264]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-05   23.4   0.5    0.00024   21.3   0.1    2.4  2  zf-HC2    Putative zinc-finger
  ------ inclusion threshold ------
       0.01   15.5   1.9      0.012   15.2   0.7    1.7  2  DUF2368   Uncharacterised conserved protein (DUF2368)


Domain annotation for each model (and alignments):
>> zf-HC2  Putative zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   2.7e-08   0.00024       7      35 .]       9      39 ..       8      39 .. 0.83
   2 ?   -1.2   0.0      0.29   2.6e+03      10      25 ..      63      78 ..      61      79 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.7e-08
                HHHHHHCCT..-SCCCHCCCHHHHCHTCHHC CS
      zf-HC2  7 lLsaYlDGe..LspeerarveaHLaeCpdCr 35
                l+s Y+ G+   ++ + ++veaHL++C+ Cr
  KIR64881.1  9 LISRYATGDdgVDDVTVWAVEAHLESCAGCR 39
                56666666666999****************9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.29
                HHHCCT-SCCCHCCCH CS
      zf-HC2 10 aYlDGeLspeerarve 25
                a lD    p  r+r++
  KIR64881.1 63 AGLDAGPGPVRRRRLR 78
                67899999******98 PP

>> DUF2368  Uncharacterised conserved protein (DUF2368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.7   1.4e-06     0.012      53      92 ..      86     128 ..      74     130 .. 0.85
   2 ?   -2.6   0.0      0.44     4e+03      75      93 ..     154     172 ..     143     176 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.4e-06
     DUF2368  53 llkwlasfyalavvllaagaikrk...npllliPlvPLtfvla 92 
                 ll wla+ +al+vv++++ +++ +     ll++PlvPL +v+a
  KIR64881.1  86 LLPWLATTTALVVVAVLLEMVSGRmpsPVLLVAPLVPLLLVAA 128
                 789*******************99443345789*****99875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.44
     DUF2368  75 rknpllliPlvPLtfvlaY 93 
                 r++ ++l  +vP   v+++
  KIR64881.1 154 RRTLAILTAVVPVLAVAGW 172
                 6778888999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1819.45
//
Query:       KIR64882.1  [L=548]
Description: alpha-galactosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-76  256.4   0.9    3.8e-76  256.0   0.9    1.2  1  Melibiase_2  Alpha galactosidase A
    1.7e-29  102.1   6.4    1.7e-29  102.1   6.4    3.0  3  CBM_2        Cellulose binding domain
    1.5e-16   60.2   0.1    5.1e-16   58.5   0.1    2.0  1  Melibiase_C  Alpha galactosidase C-terminal beta sandwich dom
    2.9e-10   39.6   0.0    5.1e-10   38.8   0.0    1.3  1  Melibiase    Melibiase
  ------ inclusion threshold ------
       0.15   12.2   0.6        0.3   11.2   0.6    1.4  1  DUF2505      Protein of unknown function (DUF2505)


Domain annotation for each model (and alignments):
>> Melibiase_2  Alpha galactosidase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.0   0.9   1.1e-79   3.8e-76       1     284 []      42     326 ..      42     326 .. 0.89

  Alignments for each domain:
  == domain 1  score: 256.0 bits;  conditional E-value: 1.1e-79
                  S--EEEESHHHHTT---TTTSTTTSSSHHHHHHHHHHHHHTTHHHHT--EEE--SS-B-SS--TTS---B-TTTSTTHHHHHHHHHHHTT-EEEEEEE CS
  Melibiase_2   1 tppmgwlawerfrcnvdceedpenciseklfmeladvlaedgykdlgyeyviiddcwlakerdkegrlqadpkrfpsgikkladyvhskglklgiyad 98 
                  tppmgw++w+ f cn+          +e l++++ad +++ g +dlgy+yv++ddcw + +rd+ g+lq dp+rfpsg+k+l+dy+h kglk+giy+ 
   KIR64882.1  42 TPPMGWNSWNTFGCNI----------NEALIRQMADAIVSSGMRDLGYQYVVVDDCWFNPNRDSAGNLQGDPTRFPSGMKALGDYIHGKGLKFGIYQV 129
                  8*************95..........699********************************************************************* PP

                  SSSB-TT....SSB-...-TTTHHHHHHHHHHHT--EEEEE-TS..SSHHHHHHHHHHHHHHHHHTTS--EEEE-HHHHH.TTTS---HHHHHHH-SE CS
  Melibiase_2  99 lgtktca....gypg...slkyleidaktfadwgvdllkldgcy..snleelaegykelslalnktgrsivyscewplyavvkkkkvdyteiaktcnl 187
                     ktca    gypg   s  +  +da+ fa wgvd+lk+d c     +++++  + +++ al +tgr+iv+s +  + ++++  + ++ +   + n+
   KIR64882.1 130 PVDKTCAqyfgGYPGatgSRGHEVQDARQFAAWGVDFLKYDWCSpeGTINDQVATFAKMRDALAATGRPIVFSINPNSIHAKTGPQRNWGD---VANM 224
                  ******6555589983334566779******************964568999**********************98888877788888765...5699 PP

                  EE-SS---SSHHHHHHH.....HHHHHHTHHHHTTT-BTTBEEE---B-TTSSSS-HHHHHHHHHHHHHTT--EEE-S-TTS--HHHHHHHT-HHHHH CS
  Melibiase_2 188 wrnyddiqdswdsvkei.....vdyfaenqdvlvevagpgkwndpdmliignfglsldqqraqmalwailaapllmsndlrkispeakalllnkevia 280
                  wr  +di+++w++ ++      ++ + +    l+++a pg +ndpdm+ +g  g++  + r+ +a+wa++a+pl+  nd+r++++ ++++l+n+++ia
   KIR64882.1 225 WRTTEDITNAWNTGQTNgypmgIQNIINVTVPLASYARPGAFNDPDMMEVGRGGMTDTEMRSHFAMWAMMASPLIAGNDIRSMDAATQTILKNQNLIA 322
                  ***********9765421111244444555668899************************************************************** PP

                  HHT- CS
  Melibiase_2 281 inqd 284
                  inqd
   KIR64882.1 323 INQD 326
                  ***9 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.4     0.065   2.3e+02      34      63 ..     221     249 ..     206     264 .. 0.68
   2 ?   -2.3   0.1       1.5   5.5e+03       7      27 ..     383     403 ..     378     414 .. 0.60
   3 !  102.1   6.4   4.8e-33   1.7e-29       7     101 .]     451     545 ..     446     545 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.065
                 EEEE--TTEEEEEEESEEEEEETTEEEEEE CS
       CBM_2  34 vewtlpagqrvtqlWnatvsqsGnsvtatn 63 
                 v   + + + +t++Wn+  ++ G ++ ++n
  KIR64882.1 221 VANMWRTTEDITNAWNTGQTN-GYPMGIQN 249
                 444457778899999987654.56666555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.5
                 EEEE-SSEEEEEEEEEE-SSS CS
       CBM_2   7 vtseWetGftasvtvkNsgss 27 
                 + + W +G +++ t + s+s 
  KIR64882.1 383 LRDAWTNGTSTTTTGTISASV 403
                 556677776666655554444 PP

  == domain 3  score: 102.1 bits;  conditional E-value: 4.8e-33
                 EEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTEE- CS
       CBM_2   7 vtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGaaC 101
                 + + W+tG t  +t++N+gssaingW++ +tlpagq++t  Wnat++ +  +v+atnvs+N+ i+pGgs+s+Gfq+++tg ++ap++ft+nG+ C
  KIR64882.1 451 TVNAWSTGLTEDITITNTGSSAINGWSLAFTLPAGQSITGGWNATYAPTSGQVSATNVSYNAAIPPGGSVSIGFQANHTGDSAAPAAFTLNGSPC 545
                 4579*********************************************9*******************************************99 PP

>> Melibiase_C  Alpha galactosidase C-terminal beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.1   1.4e-19   5.1e-16       2      71 .]     339     413 ..     338     413 .. 0.82

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 1.4e-19
                  TTEEEEEEE-SSS-EEEEEEE..-E..EEEE-..GTT--S-..EEEEETTTTEE..E-TT--EEEE-TT-EEEEEE CS
  Melibiase_C   2 gdlqvWakpLsdGdvaValfN..rttvtvdws..dlglpgsssysvrDlWtgkd..lgtgsssaevpphgvvllrl 71 
                  g+  v ak+L+dGdvaValfN  ++t+tv+ +   +g++++ + ++rD Wt+ +  ++tg+ sa+vp+hg+v++r+
   KIR64882.1 339 GTRRVLAKKLADGDVAVALFNqgSATTTVSITapAIGMSPG-TLTLRDAWTNGTstTTTGTISASVPSHGTVVYRV 413
                  7789*****************77334555554459**8888.8***********64447777************96 PP

>> Melibiase  Melibiase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.4e-13   5.1e-10      41     126 ..      43     130 ..      34     135 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 1.4e-13
   Melibiase  41 rPvllnsWeavyfdfnedklkelade.....aaklGielfvlDDGWfgkrnddnssLGDWfvneeklpdgleelakevhekglkfGlWveP 126
                  P+  nsW++   + ne+ ++++ad+      ++lG + +v+DD Wf   +d   s G+ + +++++p g+++l +++h kglkfG++  P
  KIR64882.1  43 PPMGWNSWNTFGCNINEALIRQMADAivssgMRDLGYQYVVVDDCWFNPNRD---SAGNLQGDPTRFPSGMKALGDYIHGKGLKFGIYQVP 130
                 57778******************9973333357889999********87655...56788999************************9665 PP

>> DUF2505  Protein of unknown function (DUF2505)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.6   8.3e-05       0.3      85     132 ..     360     407 ..     344     411 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.3e-05
     DUF2505  85 dgratgtvsasvkgapvels.GtltLepege.gtrlevegevkvkiPlvG 132
                 +g+at tvs++ +     +s GtltL+++ + gt  +++g++++++P  G
  KIR64882.1 360 QGSATTTVSITAPAI--GMSpGTLTLRDAWTnGTSTTTTGTISASVPSHG 407
                 466666666666666..6666******977779**************766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3848.85
//
Query:       KIR64883.1  [L=526]
Description: methyltransferase type 11 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-20   71.0   3.6    1.4e-19   70.4   3.6    1.3  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    1.5e-17   64.0   0.8    7.2e-17   61.9   0.1    2.4  2  Methyltransf_25  Methyltransferase domain
    1.4e-13   51.3   0.0    4.7e-13   49.6   0.0    2.0  1  Methyltransf_11  Methyltransferase domain
    8.5e-11   42.5   0.1    2.4e-10   41.0   0.0    1.8  1  Methyltransf_12  Methyltransferase domain
    2.7e-10   40.3   0.1    5.4e-10   39.3   0.1    1.6  1  TPMT             Thiopurine S-methyltransferase (TPMT)
    5.3e-09   36.1   0.0    9.6e-09   35.3   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    2.1e-07   30.3   5.2     0.0021   17.2   0.5    3.3  3  Lycopene_cycl    Lycopene cyclase protein
    2.3e-07   30.3   2.4    2.3e-07   30.3   2.4    3.2  4  FAD_binding_2    FAD binding domain
    3.6e-07   30.1   0.0    6.2e-07   29.3   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    1.5e-06   27.8   0.1    2.3e-05   24.0   0.0    2.4  2  MTS              Methyltransferase small domain
    2.4e-06   26.6   3.8    9.7e-05   21.2   0.3    3.3  4  HI0933_like      HI0933-like protein
    9.7e-06   25.0   0.0      0.023   13.9   0.2    2.4  2  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
    6.7e-05   23.0   0.4    0.00025   21.2   0.4    2.0  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
    8.2e-05   22.3   4.5    8.2e-05   22.3   4.5    4.0  4  DAO              FAD dependent oxidoreductase
     0.0007   19.1   0.0     0.0011   18.4   0.0    1.2  1  TehB             Tellurite resistance protein TehB
    0.00083   19.4  12.1        0.5   10.3   1.7    3.6  3  NAD_binding_9    FAD-NAD(P)-binding
      0.004   16.8   0.0     0.0085   15.7   0.0    1.5  1  NodS             Nodulation protein S (NodS)
     0.0062   15.8   0.5       0.01   15.1   0.5    1.3  1  FAD_binding_3    FAD binding domain
  ------ inclusion threshold ------
      0.011   15.1   4.3      0.011   15.1   4.3    2.3  3  FAD_oxidored     FAD dependent oxidoreductase
      0.012   16.2   1.1        0.4   11.3   0.2    3.0  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
      0.013   14.8   0.0      0.022   14.1   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.053   12.7   0.1       0.83    8.7   0.0    2.5  3  K_oxygenase      L-lysine 6-monooxygenase (NADPH-requiring)
      0.084   12.7   0.6         12    5.7   0.0    2.5  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.088   11.9  14.5      0.037   13.1   1.2    3.2  4  GIDA             Glucose inhibited division protein A
       0.22   11.1   0.0       0.34   10.5   0.0    1.3  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
       0.35    9.9   0.0        2.7    7.0   0.0    1.9  1  Pox_MCEL         mRNA capping enzyme
        2.9    8.4   5.8       0.68   10.4   0.2    2.6  2  NAD_binding_7    Putative NAD(P)-binding
        3.5    6.4   6.3        1.6    7.5   0.2    2.7  3  Trp_halogenase   Tryptophan halogenase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   3.6   2.3e-22   1.4e-19       1     291 [.       5     287 ..       5     294 .. 0.77

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 2.3e-22
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE..TTHCHHHCSHHHHCHHHHHHHHHHHHH....HHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve..legtclnggcllskallgvaedaeias....evvkklnqg.ielllgeevvkidpgkkkvklekkk 91 
                  +dv+v+GgG+AGl+ al la+a   v++v+  + ++ + g   +++ l + + ++ ++     ++v++++ + +  + +  + + d+g   v+l    
   KIR64883.1   5 YDVLVVGGGAAGLSGALALARARRSVLVVDagQPRNAPAG--HVHNYLGREGTPPAELVaagrDEVTRYGGEiVAGRVE-AAAREDTGF-VVTL---- 94 
                  69***************************84444444444..4455555555555544467997778888773333333.233333333.4444.... PP

                  CTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  92 egdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaal 189
                   + ++++ + +l++AtG    ++++pG+ae +g+ v ++  + +++   ++  i v   G+++v  A  +++   +v l+ + ++l       +++a 
   KIR64883.1  95 -DGGREVRARRLLVATGLADELPDLPGLAERWGRDVLHCPYCHGWEVRDRR--IGVLATGPTAVHQAELWRQWSPHVLLLLHDTTLA------VEDA- 182
                  .6789******************************9********9877776..************************9988877765......5665. PP

                  HHHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCEEEESEEEE-S-EEES-HHCS....HCCT-EEEETTEE.....E--TTSBESSTTEEE-GGG CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 190 eealekeGvevklgtsvkeidgngekle.vvledgeeidadlvvvavGvrpstelle....eklglelderggi.....vvdeflrtnvpgiyaiGDv 277
                   e+l ++ ++v+   +v +++  ++ l+ v l +ge+++ d vvva  ++++ e le    + + +  + +g++       d++++t vpg++++G v
   KIR64883.1 183 -ERLAAREITVV-ADRVAAVEVTDDTLTgVRLASGEVVALDAVVVAPRFTARAEVLEslgcKPVDV--EFGGQVigsqvPADPTGATAVPGVWVAGNV 276
                  .88999999999.5666688888887889***************************5553333333..4466656666589***************** PP

                  CTECCSS--HHHHH CS
                  xxxxxxxxxxxxxx RF
  Pyr_redox_2 278 aggkggpelaqaAv 291
                  a   ++ ++++ + 
   KIR64883.1 277 A---DVRAQVVSSA 287
                  *...4444444333 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       4.1   2.6e+03       1      29 [.       7      35 ..       7      40 .. 0.78
   2 !   61.9   0.1   1.1e-19   7.2e-17       2      97 .]     358     453 ..     357     453 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 4.1
                     EEEET-TTSHHHHHHHCTSTSSEEEEEES CS
  Methyltransf_25  1 vLdlGcGtGrltlalakrlgkakvtgvDi 29
                     vL +G G   l+ ala +  + +v+ vD 
       KIR64883.1  7 VLVVGGGAAGLSGALALARARRSVLVVDA 35
                     78899999998877775543699999996 PP

  == domain 2  score: 61.9 bits;  conditional E-value: 1.1e-19
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT....TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl....nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiar 91 
                      Ld+GcG+G ++ +la r+   +vt+vDis+++le+a+++a+++g+    ++e++++d++  p ++g +Dlv ++  ++hl+ + ++++++++a 
       KIR64883.1 358 LDVGCGEGADAGWLAGRG--WRVTAVDISATALERAAAHAAAAGPevadRIEWLHADLRVRPPAEGAYDLVSAQ--FMHLPGAARRELFARLAA 447
                      9****************5..**********************99999**************************6..789999************ PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                      ++ pgG
       KIR64883.1 448 AVAPGG 453
                      *****9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   7.4e-16   4.7e-13       1      96 []     358     457 ..     358     457 .. 0.92

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 7.4e-16
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-....EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl....kvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvL 88 
                      LdvGcG G+ a +la rg rv++vD+s+++l++a ++a  +g+    ++e+++ad++  p +++ +Dlv +++  +h+  + ++++++ +a  +
       KIR64883.1 358 LDVGCGEGADAGWLAGRGWRVTAVDISATALERAAAHAAAAGPevadRIEWLHADLRVRPPAEGAYDLVSAQF--MHLpgAARRELFARLAAAV 449
                      8******************************999888888888889***********88**********9985..666679************* PP

                      EEEEEEEE CS
  Methyltransf_11  89 kpgGllvi 96 
                       pgG+l+i
       KIR64883.1 450 APGGTLLI 457
                      ****9976 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   3.7e-13   2.4e-10       1      99 []     358     455 ..     358     455 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 3.7e-13
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhl..kdirevldnirk 91 
                      L++GcG G+ +  l+ +  ++++t+vDis+ a+e+a+++ a+ +++ ++++e+ + dl  +++  +++Dlv a + + hl  + +re+++++++
       KIR64883.1 358 LDVGCGEGADAGWLAGR--GWRVTAVDISATALERAAAHAAAAGPEVADRIEWLHADLRVRPPAeGAYDLVSAQF-M-HLpgAARRELFARLAA 447
                      8****************..**************************************99888889*****98754.3.44479999******** PP

  Methyltransf_12  92 lLkpgGrl 99 
                      +++pgG l
       KIR64883.1 448 AVAPGGTL 455
                      ******86 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.1   8.4e-13   5.4e-10       2      85 ..     322     402 ..     321     515 .. 0.84

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 8.4e-13
                 HHHHHHHHHHTT--TT--SS--HHHHHHHHT.T-S--EEEEEET-TT-HHHHHH-BTTEEEEEE-S-HHHHHHHHHHHTT.SGGG CS
        TPMT   2 eedfWekrweeeqipfhqeevnpllkkfldalkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvekffeeanl.epkv 85 
                 ee+ We+r++++   +   + np+l+    +++  + +r+l  +CG++ d+ wlA +g++v +v++s  A+e++++ a    p+v
  KIR64883.1 322 EEAAWEERYRARPAVWSG-RPNPQLV---AEATGLPAGRALDVGCGEGADAGWLAGRGWRVTAVDISATALERAAAHAAAaGPEV 402
                 5789*********99987.6666554...444667888***********************************887766545553 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.5e-11   9.6e-09      21     126 ..     352     470 ..     318     498 .. 0.78

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.5e-11
  Methyltransf_23  21 raggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.kakkaqkdqfdeqeaae........pqgkfdlIvlrevlehvp..dppellr 103
                       + gr Ld+GcG+G  +  l+ +g+ vt+vD+s  a e+a+  a  a ++ +d++e+           +g +dl+++ ++  h+p     el++
       KIR64883.1 352 LPAGRALDVGCGEGADAGWLAGRGWRVTAVDISATALERAAaHAAAAGPEVADRIEWLHadlrvrppAEGAYDLVSAQFM--HLPgaARRELFA 443
                      5668**********************************99886666777777777666655555555778*******988..66643789**** PP

  Methyltransf_23 104 qiatllkpgGylllseplasl....ke 126
                      ++a+ ++pgG ll+  +  ++    ++
       KIR64883.1 444 RLAAAVAPGGTLLIVGHHPRDlrttAH 470
                      *************99886554333333 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.5   3.3e-06    0.0021       1      46 [.       6      49 ..       6      62 .. 0.87
   2 !   12.6   0.0     8e-05     0.051     104     161 ..      75     141 ..      59     145 .. 0.72
   3 ?    0.6   0.2      0.35   2.3e+02      87     139 ..     175     227 ..     155     247 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.3e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpnnyvWsd 46
                   Dv+v+G+G+Agls A  l  a+++ +v++++a++    p+ +v  +
     KIR64883.1  6 DVLVVGGGAAGLSGALAL--ARARRSVLVVDAGQPRNAPAGHVHNY 49
                   9*****************..99999*******99887777777655 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 8e-05
  Lycopene_cycl 104 lleakvesveeeeageslvvleggrkirarlvvdarglaslk..........karrlglQtfyGveve 161
                     + ++ve+++ e+    +v+l+ggr++rar  ++a+gla +           +   l     +G+ev+
     KIR64883.1  75 IVAGRVEAAAREDT-GFVVTLDGGREVRARRLLVATGLADELpdlpglaerwGRDVLHCPYCHGWEVR 141
                    56778888777766.899*******************8876556666666532222333455666665 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.35
  Lycopene_cycl  87 krlkeellerlvengvklleakvesveeeeageslvvleggrkirarlvvdar 139
                    + l+ e +erl+  +++ +  +v++ve  +++ + v l+ g+ +   +vv+a 
     KIR64883.1 175 TTLAVEDAERLAAREITVVADRVAAVEVTDDTLTGVRLASGEVVALDAVVVAP 227
                    566667789999999999999*****99999999********99999999985 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   2.4   3.6e-10   2.3e-07       1      35 [.       6      40 ..       6      47 .. 0.94
   2 ?   -2.4   0.0       2.9   1.9e+03     175     203 ..      88     113 ..      74     137 .. 0.76
   3 ?    0.1   1.1      0.51   3.2e+02     151     202 ..     176     241 ..     121     270 .. 0.68
   4 ?   -1.3   0.1       1.4   8.9e+02     378     402 ..     259     277 ..     244     298 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 3.6e-10
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefg 35
                   Dv+V+G+G+AGL+ Al++a+a ++v+vv+ +q+++
     KIR64883.1  6 DVLVVGGGAAGLSGALALARARRSVLVVDAGQPRN 40
                   9*******************************965 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.9
                    EEEEEEETTTTCEEEEEESEEEE-----G CS
  FAD_binding_2 175 tGavvenpesgrevrirakavvlatgGfg 203
                    tG vv+ +++grevr  a+++++atg + 
     KIR64883.1  88 TGFVVT-LDGGREVR--ARRLLVATGLAD 113
                    566666.56777665..999999999666 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.51
                    HHTCTEEEEESEEEEEEEECTTEEEEEEEEET.......TTTCEE.........EEEESEEEE----- CS
  FAD_binding_2 151 arkagvdfqerteadeLivedgrvtGavvenp.......esgrev.........rirakavvlatgGf 202
                       ++v+  er++a+e++v  +rv  ++v+++       +sg+ v         r++a+a vl + G+
     KIR64883.1 176 T--LAVEDAERLAAREITVVADRVAAVEVTDDtltgvrlASGEVValdavvvapRFTARAEVLESLGC 241
                    3..34777788888888888889999999888776666656666655555566666666555555555 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.4
                    BETTSBESTTEEESSBTEEE-STCE CS
  FAD_binding_2 378 tdengrvldadgqpipGLYAaGeva 402
                     d++g +      ++pG + aG+va
     KIR64883.1 259 ADPTGAT------AVPGVWVAGNVA 277
                    4555555......99********99 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   9.6e-10   6.2e-07       6     113 ..     356     461 ..     353     504 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 9.6e-10
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld...nveFeqgdieeleklledekfDlilsnevlnaladpdkilee 96 
                      r lD+GCG+G+++  la   g + +v+ +Dis++a+e+A ++a+  g +   ++e  ++d    +   ++  +Dl+ ++      a+  + + +
       KIR64883.1 356 RALDVGCGEGADAGWLA---GRGWRVTAVDISATALERAAAHAAAAGPEvadRIEWLHADLRVRP--PAEGAYDLVSAQFMHLPGAARRELFAR 444
                      68***************...66889**********************997788888888888855..335899997765444777888888888 PP

  Methyltransf_31  97 iervlkpggilliedpr 113
                      +  ++ pgg lli  ++
       KIR64883.1 445 LAAAVAPGGTLLIVGHH 461
                      88888888888887766 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.56   3.6e+02      45      89 ..     177     222 ..     176     230 .. 0.84
   2 !   24.0   0.0   3.5e-08   2.3e-05      31     145 ..     353     465 ..     344     484 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.56
                 HHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-ST CS
         MTS  45 lgaalakespeaevtlvdvdarAlesakenleankle.vevvasdv 89 
                 l+++ a++    e+t+v    +A+e++  +l+  +l+ +evva d+
  KIR64883.1 177 LAVEDAERLAAREITVVADRVAAVEVTDDTLTGVRLAsGEVVALDA 222
                 5666778888899******************999988888888776 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 3.5e-08
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC....EEEEE-STTTTST.TS-EEEEEE---STTTCHCHHHHHHHHHHH CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle....vevvasdvleeve.ekkfdlivsNPPfhagkatelavaeeliae 124
                  +g++lD+GcG G+ + +la +  +  vt+vd++a Ale a + ++a + e    +e ++ d+    + e+ +dl+ s   +h   a    + +el+a 
  KIR64883.1 353 PAGRALDVGCGEGADAGWLAGRGWR--VTAVDISATALERAAAHAAAAGPEvadrIEWLHADLRVRPPaEGAYDLV-SAQFMHLPGA----ARRELFAR 444
                 5689****************98877..9*************9999999998889999999**98877747788876.5556666666....88999999 PP

                 HHHHEEEEEEEEEEEETTSCH CS
         MTS 125 AkeaLkegGeLliVanrklgy 145
                  ++a ++gG+LliV  +  + 
  KIR64883.1 445 LAAAVAPGGTLLIVGHHPRDL 465
                 999999*******98876655 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.3   1.5e-07   9.7e-05       1      33 [.       5      37 ..       5      40 .. 0.94
   2 ?    3.9   0.0     0.028        18     131     163 ..      79     110 ..      58     117 .. 0.80
   3 ?   -2.5   0.1       2.4   1.5e+03     129     161 ..     194     226 ..     183     227 .. 0.84
   4 ?   -0.1   0.0      0.45   2.9e+02     371     390 ..     263     282 ..     232     284 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.5e-07
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVlllekak 33
                 +dv+v+GgGaAGl +A+++a++ ++Vl++++++
   KIR64883.1  5 YDVLVVGGGAAGLSGALALARARRSVLVVDAGQ 37
                 59****************************975 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.028
                  -EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 131 evksvekeedgkfrvktkseeeleadklvlAtG 163
                  +v+++++e++g f v++++++e++a++l++AtG
   KIR64883.1  79 RVEAAAREDTG-FVVTLDGGREVRARRLLVATG 110
                  67777777777.********************9 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.4
                  S--EEEEECETTE.EEEEE.TTEEEEESEEEE- CS
  HI0933_like 129 etevksvekeedgkfrvktkseeeleadklvlA 161
                    +v++ve ++d    v++ s+e ++ d++v+A
   KIR64883.1 194 ADRVAAVEVTDDTLTGVRLASGEVVALDAVVVA 226
                  468999999999999999999999999999998 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.45
                  BBTTSTTEEE-GGGBSEEE- CS
  HI0933_like 371 eskkvpgLffaGEvlDvegv 390
                   + +vpg+++aG v Dv ++
   KIR64883.1 263 GATAVPGVWVAGNVADVRAQ 282
                  5789*************986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   3.7e-05     0.023       1      32 [.       8      38 ..       8      43 .. 0.91
   2 !    8.8   0.0    0.0013      0.84     103     136 ..      79     113 ..      75     274 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.7e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgni 32
                 +++G+G+aGl+ a++l +a   ++l+++ g+ 
   KIR64883.1  8 LVVGGGAAGLSGALALARARR-SVLVVDAGQP 38
                 69******************9.8*****9986 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0013
  Pyr_redox_3 103 eVesvkkedegfevetske.tyeAkkviiAtGefd 136
                  +Ve+ ++ed+gf+v+ + + +++A+++++AtG  d
   KIR64883.1  79 RVEAAAREDTGFVVTLDGGrEVRARRLLVATGLAD 113
                  6889999**********988************744 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.4   3.8e-07   0.00025       1      28 [.       9      36 ..       9      62 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.8e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   +vG+G++Gl+ A +La+a+++vl+++++
     KIR64883.1  9 VVGGGAAGLSGALALARARRSVLVVDAG 36
                   8*************************96 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   4.5   1.3e-07   8.2e-05       1      64 [.       6      64 ..       6      67 .. 0.77
   2 !    9.0   0.6    0.0014      0.91     144     207 ..      56     115 ..      40     133 .. 0.78
   3 ?    1.7   1.5      0.24   1.5e+02     152     199 ..     181     226 ..     164     268 .. 0.83
   4 ?   -0.5   2.2       1.1   7.2e+02      59     134 ..     307     428 ..     276     506 .. 0.54

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.3e-07
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS..STHHSTHHHHHHHHHH CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl..rylpeaselarlslea 64
                dv+++GGG +Gls A++Lar+   V+++++g ++      + +g++h +l  + +p+a    +l++++
  KIR64883.1  6 DVLVVGGGAAGLSGALALARARrsVLVVDAG-QPR----NAPAGHVHNYLgrEGTPPA----ELVAAG 64
                8*****************987558*******.877....7888888886665434444....566655 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0014
                 EHHHHHHHHHHHHHHTT-EEEESECEEEEEEEE.TCEEEEEEECT.EEEEEEEEEEE--GGGHHHH CS
         DAO 144 dpakltaalaraaealGveilegtevtgleeed.gkvwgverttp.gendaadavVnaaGawsdll 207
                  pa+l+aa ++++ + G+ei+ g +v++  +ed g v+++    + g++++a+ + +a+G+  d+l
  KIR64883.1  56 PPAELVAAGRDEVTRYGGEIVAG-RVEAAAREDtGFVVTL----DgGREVRARRLLVATGLA-DEL 115
                 6999*******************.9999866653555555....4466645688******76.444 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.24
                 HHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE- CS
         DAO 152 laraaealGveilegtevtgleeedgkvwgverttpgendaadavVna 199
                  a++++a+ ++++   +v ++e +d+ ++gv r ++ge++a davV+a
  KIR64883.1 181 DAERLAAREITVVAD-RVAAVEVTDDTLTGV-RLASGEVVALDAVVVA 226
                 577889999999999.9999*999999****.6666888899****99 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.1
                 HHHHHHHHHH.HHHHHHHSSTTSEEEEEEEEEESS...........................................HHHHHHHHHHHHHHHHTTTTE CS
         DAO  59 rlslealeel.releeelgididyrrtGllslaad...........................................eeelealdkllallleaglda 113
                 r + +a++e+ r + ee + +  yr +  ++ ++                                            ++ le+ ++ +a++++  +d 
  KIR64883.1 307 RAAVDAYRERtRTMFEEAAWEERYRARPAVWSGRPnpqlvaeatglpagraldvgcgegadagwlagrgwrvtavdisATALERAAAHAAAAGPEVADR 405
                 556666555556666665544446666666666533444444444444444444444444444444444444444433233444333333333333344 PP

                 .EEEEHHHHHHHSTTST..TTSEE CS
         DAO 114 .elldaeevrelepalp..gllga 134
                  e+l a+ +r + pa    +l+ a
  KIR64883.1 406 iEWLHAD-LRVRPPAEGayDLVSA 428
                 5788887.6666664223455555 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.7e-06    0.0011      29     132 ..     352     457 ..     342     470 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.7e-06
                 S-S-EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHH...HHHHTT-TTEEEEE--GGG--.--S-EEEEEEESSGGGS-GGGHHHHHHHHHHT CS
        TehB  29 vkpgkvldlgcgqgrnslylsllgydvtawdknensiaflee...ikekenlknistalydineak.lderydfilstvvlmfleaeripsiienmqec 123
                 +  g++ld+gcg+g ++ +l+  g+ vta+d  +++++        +  e  + i+    d+      +  yd++  +  +m l   +  ++ + +   
  KIR64883.1 352 LPAGRALDVGCGEGADAGWLAGRGWRVTAVDISATALERAAAhaaAAGPEVADRIEWLHADLRVRPpAEGAYDLV--SAQFMHLPGAARRELFARLAAA 448
                 55689**************************99887765433000233455555555555554432133445543..2345555555555666666666 PP

                 EEEEEEEEE CS
        TehB 124 tkvggynli 132
                   +gg  li
  KIR64883.1 449 VAPGGTLLI 457
                 666665555 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.3     0.026        16       2      33 ..       9      38 ..       8      52 .. 0.71
   2 !    9.2   0.2    0.0017       1.1     118     154 ..      74     110 ..      59     112 .. 0.91
   3 !   10.3   1.7   0.00078       0.5     114     152 ..     187     226 ..     175     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.026
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdp 33
                   +vG+G++Gl+ + +L++ +  +s l ++   p
     KIR64883.1  9 VVGGGAAGLSGALALARAR--RSVLVVDAGQP 38
                   8***************995..44444444444 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0017
  NAD_binding_9 118 evhraevvdleeradgqavlladgaslaadaVvLAlG 154
                    e++ ++v++ +++++g+ v+l++g++++a+++ +A+G
     KIR64883.1  74 EIVAGRVEAAAREDTGFVVTLDGGREVRARRLLVATG 110
                    568899******************************9 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00078
  NAD_binding_9 114 gvtvevhraevvdleeradgq.avlladgaslaadaVvLA 152
                      +++v+ ++v ++e ++d+   v+la+g+ +a+daVv+A
     KIR64883.1 187 AREITVVADRVAAVEVTDDTLtGVRLASGEVVALDAVVVA 226
                    3489****************757***************98 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.3e-05    0.0085      44     109 ..     354     425 ..     344     457 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.3e-05
        NodS  44 iadalevGcaaGalterlapyckrltvvdvveeaiararervke.....sshiswivsdvqqfs.tdekfdl 109
                 ++ al+vGc  Ga +  la    r+t vd+   a++ra           +  i w+ +d++    ++  +dl
  KIR64883.1 354 AGRALDVGCGEGADAGWLAGRGWRVTAVDISATALERAAAHAAAagpevADRIEWLHADLRVRPpAEGAYDL 425
                 688**********************************98876541111135699999998754314446666 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.5   1.6e-05      0.01       2      32 ..       5      35 ..       4      48 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.6e-05
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   +dVl+VG+G aGl+ al L++a  +v++v+ 
     KIR64883.1  5 YDVLVVGGGAAGLSGALALARARRSVLVVDA 35
                   69********************777777775 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   4.3   1.7e-05     0.011       1      31 [.       6      36 ..       6      38 .. 0.95
   2 ?   -3.1   0.0       5.6   3.6e+03     123     159 ..      90     126 ..      75     128 .. 0.67
   3 ?   -2.3   0.1       3.4   2.2e+03      83     127 ..     172     214 ..     145     226 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.7e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveer 31
                  Dv+VvGGg+aG+  A+a ara ++vl+v+  
    KIR64883.1  6 DVLVVGGGAAGLSGALALARARRSVLVVDAG 36
                  9***************************975 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.6
  FAD_oxidored 123 vtveskegrktirAkvfiDATgdGd.laalaGvpyrvG 159
                    +v + +g++++rA++ + ATg +d l  l G   r+G
    KIR64883.1  90 FVV-TLDGGREVRARRLLVATGLADeLPDLPGLAERWG 126
                   444.4568999999999999999983444555555555 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.4
  FAD_oxidored  83 tfepevakavleemlaeagvtvllntrlvevekegkriesvtves 127
                    ++ + a + +e + a+ ++tv+ +++  +ve++++++++v+++s
    KIR64883.1 172 LHDTTLAVEDAERLAAR-EITVVADRV-AAVEVTDDTLTGVRLAS 214
                   45555555555555544.677776654.45555555899998854 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00063       0.4       2      30 ..       7      35 ..       6      40 .. 0.93
   2 ?    2.1   0.0      0.47     3e+02      37      79 ..     172     213 ..     165     215 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00063
                EEEECSSHHHHHHHHHHHHTTSEEEEEES CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvver 30
                v+vvGgG  gl  A ala+ + +V vv++
  KIR64883.1  7 VLVVGGGAAGLSGALALARARRSVLVVDA 35
                89**********************99986 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.47
                 TSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEEE CS
   Pyr_redox  37 llDeeaskilqeklekngievllntkveeiegsedgvesvklk 79 
                 l D +++ + +e+l ++ i+v+ + +v+++e ++d++++v+l+
  KIR64883.1 172 LHDTTLAVEDAERLAAREITVVAD-RVAAVEVTDDTLTGVRLA 213
                 557777777788899999998865.688999999999999986 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.5e-05     0.022      47     152 ..     353     458 ..     337     493 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.5e-05
                      -TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS...TEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHH CS
  Ubie_methyltran  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki...nieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLk 137
                      ++ ++lDv +G g  a      +g+  +v+ +Di+++ L+ + +++   g     +ie+l+a+    p  ++++D+v   f     + + + + 
       KIR64883.1 353 PAGRALDVGCGEGADAGW---LAGRGWRVTAVDISATALERAAAHAAAAGPEvadRIEWLHADLRVRPPAEGAYDLVSAQFMHLPGAARRELFA 443
                      445899****99966655...467888******************9999977788**********************99997666666777777 PP

                      HHHHHEEEEEEEEEE CS
  Ubie_methyltran 138 eayrvlkpGGrlvvl 152
                       +   + pGG+l+++
       KIR64883.1 444 RLAAAVAPGGTLLIV 458
                      777777777777765 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.56   3.6e+02       2      25 ..       4      27 ..       3      38 .. 0.71
   2 ?    8.7   0.0    0.0013      0.83     109     177 ..      65     131 ..      59     170 .. 0.70
   3 ?   -0.7   0.0      0.98   6.3e+02     175     213 ..     171     209 ..     136     231 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.56
  K_oxygenase  2 ilDligiGiGpsnLsLailleevk 25
                  +D+  +G G++ Ls a++l+ ++
   KIR64883.1  4 AYDVLVVGGGAAGLSGALALARAR 27
                 578888888888888888877766 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0013
  K_oxygenase 109 leeqvrfgeeveevepdeeeee.elltveskdaegeeeelearnlvlgvGtepkiPev...leklegkervvH 177
                   +e  r+g e+ + +++++++e + + v+     +  +e++ar+l++++G   ++P++   +e+     +v+H
   KIR64883.1  65 RDEVTRYGGEIVAGRVEAAAREdTGFVVTL----DGGREVRARRLLVATGLADELPDLpglAERWG--RDVLH 131
                  566678998888766666655557788887....3489************9888887521133332..56666 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.98
  K_oxygenase 175 vvHsseylerkeellakkriaVvGsGqSaaeifedllrr 213
                  ++H  +++ + +e+la+++i+Vv     a e+++d l+ 
   KIR64883.1 171 LLHDTTLAVEDAERLAAREITVVADRVAAVEVTDDTLTG 209
                  56888888888889999******9999999999998876 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2     0.042        27       2      32 ..       7      37 ..       6      52 .. 0.88
   2 ?    5.7   0.0     0.019        12      16      44 ..     369     397 ..     362     412 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.042
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdise 32
                v v+G G  G + a ++a+a  +V +vd  +
  KIR64883.1  7 VLVVGGGAAGLSGALALARARRSVLVVDAGQ 37
                78*************************9854 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.019
                 HHHHHTT-EEEEE-S-HHHHHHHHHHHHH CS
     3HCDH_N  16 avfasagleVvlvdiseealekalekiek 44 
                   +a +g +V+ vdis+ ale+a++++++
  KIR64883.1 369 GWLAGRGWRVTAVDISATALERAAAHAAA 397
                 568999*****************998876 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.2   5.7e-05     0.037       1      28 [.       6      33 ..       6      64 .. 0.86
   2 ?   -3.4   0.0       6.1   3.9e+03     125     149 ..      86     110 ..      74     111 .. 0.72
   3 ?    7.1   0.1    0.0038       2.4     109     147 ..     188     226 ..     176     227 .. 0.92
   4 ?   -0.6   0.6      0.85   5.5e+02     354     387 ..     266     300 ..     261     305 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.7e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi 28
                dv V+GgG AG+  Ala+ar+  +vl +
  KIR64883.1  6 DVLVVGGGAAGLSGALALARARRSVLVV 33
                79*******************9999887 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.1
                 TTEEEEEEETTS-EEEECEEEE--T CS
        GIDA 125 ekkvkgvvtedgetikakavviatG 149
                 e++  +v+++ g++++a+   +atG
  KIR64883.1  86 EDTGFVVTLDGGREVRARRLLVATG 110
                 5556678999999999999999999 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0038
                 TTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE- CS
        GIDA 109 pnleiieeeveeliveekkvkgvvtedgetikakavvia 147
                  +++++ ++v+ ++v++++++gv++++ge++  +avv+a
  KIR64883.1 188 REITVVADRVAAVEVTDDTLTGVRLASGEVVALDAVVVA 226
                 78***********************************98 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.85
                 SSBTEEE-CGGGTB-SH.HHHHHHHHHHHHHHHHH CS
        GIDA 354 kvkgLflAGqinGteGY.eEaaaqGllAGinaark 387
                 +v+g+++AG++  +  + + +aa Gl AG  ++++
  KIR64883.1 266 AVPGVWVAGNVADVRAQvVSSAAAGLAAGAAINAD 300
                 58899999999999765167889****99777665 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00053      0.34       3      58 ..     356     413 ..     354     449 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00053
  Methyltransf_15   3 vilDlfsGaGGnviqfalvfekviaieinleklacaqhNaev..Ygvsdkitlvlgdv 58 
                        lD+ +G G ++  +a  + +v a++i+   l+ a+  a +   +v+d+i + ++d+
       KIR64883.1 356 RALDVGCGEGADAGWLAGRGWRVTAVDISATALERAAAHAAAagPEVADRIEWLHADL 413
                      579****************99***********987655544411579********997 PP

>> Pox_MCEL  mRNA capping enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0042       2.7      68     106 ..     357     394 ..     350     477 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0042
    Pox_MCEL  68 vLdldcgkGgDLeKyekgeIsklvatDiaeesieeckeR 106
                  Ld++cg+G+D   + +g+  +  a+Di+++++e++   
  KIR64883.1 357 ALDVGCGEGAD-AGWLAGRGWRVTAVDISATALERAAAH 394
                 69*********.579999999**********99998754 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2    0.0011      0.68       9      39 ..       6      36 ..       3     107 .. 0.78
   2 ?    0.2   0.1       1.6     1e+03       3      59 ..     138     194 ..     137     244 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0011
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvape 39
                    vlvvGgG  +++ +  l++a   v vv+  
     KIR64883.1  6 DVLVVGGGAAGLSGALALARARRSVLVVDAG 36
                   69*************************9876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.6
  NAD_binding_7   3 ldlkgkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvklaeeelekdl 59 
                    ++++++++ v   G+ A + ++   + + +v ++  +++ ++e+  +la +e+    
     KIR64883.1 138 WEVRDRRIGVLATGPTAVHQAELWRQWSPHVLLLLHDTTLAVEDAERLAAREITVVA 194
                    567777777777777777777777777777777777766666666666655542222 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2    0.0025       1.6       1      31 [.       6      33 ..       6      42 .. 0.85
   2 ?   -1.1   0.1      0.99   6.3e+02     164     209 ..      68     111 ..      63     116 .. 0.77
   3 ?    1.0   0.2      0.24   1.5e+02     166     204 ..     187     224 ..     182     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0025
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEE CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlv 31
                    ++++vGGG aG   A ala+a +   +v++v
      KIR64883.1  6 DVLVVGGGAAGLSGALALARARR---SVLVV 33
                    699*****************994...46665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.99
                     HHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGG CS
  Trp_halogenase 164 aearGvtrvegkvvevqldedgrveslrledgreveadlfiDcsGf 209
                      ++ G ++v g+v+ +  +++g+v  l  + grev a+  + ++G 
      KIR64883.1  68 VTRYGGEIVAGRVEAAAREDTGFVVTL--DGGREVRARRLLVATGL 111
                     56678889999999999999**99655..56999998866667765 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.24
                     HCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEE CS
  Trp_halogenase 166 arGvtrvegkvvevqldedgrveslrledgreveadlfi 204
                     ar +t+v ++v+ v++  d+  +++rl++g++v  d ++
      KIR64883.1 187 AREITVVADRVAAVEVT-DDTLTGVRLASGEVVALDAVV 224
                     678999*****988876.6899***********999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 3362.75
//
Query:       KIR64884.1  [L=124]
Description: PadR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-25   88.1   1.0    3.6e-25   87.7   1.0    1.2  1  PadR      Transcriptional regulator PadR-like family
     0.0012   18.9   0.0     0.0023   18.0   0.0    1.6  1  HTH_34    Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   1.0   4.1e-29   3.6e-25       1      73 [.      16      88 ..      16      90 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 4.1e-29
                HHHHHCCS-EEHHHHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHH CS
        PadR  1 iLalleeqpsyGyeiikeleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrel 73
                +L++l+e++syGy+i k+++els+g le  eG lYp+L+rLe+ g ves+w++   g++rkyYr+Td+Gr+el
  KIR64884.1 16 VLGILAEGESYGYAILKQVNELSGGRLEWTEGLLYPLLHRLERLGHVESYWQTPPGGRRRKYYRITDQGRAEL 88
                89*********************************************************************98 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.6e-07    0.0023      24      71 ..      42      90 ..      15      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.6e-07
      HTH_34 24 leatdgnLsvhlkkLekagYievd.kefkgkkprtllriTpeGreafkk 71
                le t+g L+  l+ Le  g +e    +  g+++r  +riT++Gr++  +
  KIR64884.1 42 LEWTEGLLYPLLHRLERLGHVESYwQTPPGGRRRKYYRITDQGRAELVE 90
                889******************96615668999************98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 935.65
//
Query:       KIR64885.1  [L=456]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   14.6   0.6      0.031   14.1   0.6    1.1  1  ARGLU     Arginine and glutamate-rich 1
      0.097   11.2  44.6       0.13   10.8  44.6    1.1  1  DUF2339   Predicted membrane protein (DUF2339)


Domain annotation for each model (and alignments):
>> ARGLU  Arginine and glutamate-rich 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.6   3.5e-06     0.031      54     130 ..       5      81 ..       1      87 [. 0.92

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.5e-06
       ARGLU  54 veeelerereaeleeekrkeeeerkkreelerileenkrkveeaqrklaEerlaeleekrrlkeerqrlkkeeekke 130
                  +++le + ++  + ++r++e ++++ eele+ l+ +  +++ea  +  E  l  +++   l+e  +++++e++++ 
  KIR64885.1   5 SDSDLEGQIAQWRAYTRRRRELHHADTEELEDHLRSRITELTEAGLRSDEAFLIAVKRMGSLDELSREFAREHSERL 81 
                 577899999999999*******************************************************9999875 PP

>> DUF2339  Predicted membrane protein (DUF2339)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  44.6   1.5e-05      0.13     220     565 ..     102     447 ..      81     454 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.5e-05
     DUF2339 220 vdatlvfgaplvalvlq...yalladl.eygwalaalalaalyl.alaawlarrkrekaralgeallll.avvfltlAlplaleaa.......wltval 305
                    ++v+ a+l+al+++   ++ l  l + + a+ a +l+++ l alaa  a ++r   r++g+ ++l    ++++ A pla + +        l+  l
  KIR64885.1 102 ELPVMVLCAALAALAIKvpsWFGLD-LaDEDAAFYARNLSLFALpALAAYFAWQRRVGVRVVGALVALFaLGGVAANAYPLAGDSQsfgltaiHLP--L 197
                 5557888888888888866433333.257778888877666555233444444445566777766666645567788*****99997776633333..3 PP

     DUF2339 306 Ale.gaalawlaglrqkrrlarlfgllalrlllaaalllalvllrlalalsllvllpllllllllkekelgalv.wlllgyglpaaalalaawllrrre 402
                 Al+ ++++a++ g ++++r+   f  ++  +++ +  llal +  l      +++++ ++ ++ ++    + +  w  l + +++aa++++awl+ +++
  KIR64885.1 198 ALWlVVGVAYVGGDWRSERRRMDFIRFTGEWVIYFS-LLALGGGVL------TAFTAGTFQAIGID--AERFISsW--LLPCGAMAAVVVSAWLVEAKQ 285
                 554144566667777777777777777777777773.333333333......23333322222333..22333356..445566999*******99766 PP

     DUF2339 403 ...........dklarvleaaallllllllavelryalaggllfagswaslaeallalpvlvllalallllarrrasaslaslyragaalllllallll 490
                            ++++ +++a++l++l+++++++    +++      +   l++  l+++v   l+l+l+++ +r  +a++  l+ + + +l++ al+  
  KIR64885.1 286 svienmapvltRVFTPLFAATLLAFLVAVVWTNSGIDVKR------DVLILFDL-LLVVV---LGLLLYAISARDPAARP-GLFDRLQLALVVSALVID 373
                 6787776444333333333333334444333333333333......33333222.33333...58888888888777776.567777777777777777 PP

     DUF2339 491 llllvv.vlanplligeavgglpl.........lNpldlal.llplvlllllarllkraappaegklrraaaalalalaalffvll 565
                 +l+lv+ ++         +g++ +          N+++l+  +  ++l+l ++r  +  a+ ++ ++    + la+  +++++v+l
  KIR64885.1 374 VLVLVAiTSR--------IGEWGFspnktaalgENIVLLTNlAWSAWLFLGFVRGRAPFARLERWQT----RYLAVYAGWAWVVVL 447
                 7666663332........3332222222222235777777645666666666666554433333332....233444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 2834.72
//
Query:       KIR64886.1  [L=64]
Description: hypothetical protein TK50_04735 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 459.04
//
Query:       KIR64887.1  [L=347]
Description: hypothetical protein TK50_04740 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-05   23.9   0.0    5.5e-05   23.2   0.0    1.2  1  DUF916       Bacterial protein of unknown function (DUF916)
    0.00076   20.2   0.4     0.0026   18.4   0.0    1.9  2  fn3_5        Fn3-like domain
     0.0023   18.1   5.2     0.0028   17.9   1.0    3.2  2  NPCBM_assoc  NPCBM-associated, NEW3 domain of alpha-galactosi
  ------ inclusion threshold ------
      0.012   15.8   0.0      0.026   14.7   0.0    1.6  1  FixG_C       IG-like fold at C-terminal of FixG, putative oxi
       0.19   12.3   2.5       0.78   10.3   0.2    2.6  3  LEA_2        Late embryogenesis abundant protein


Domain annotation for each model (and alignments):
>> DUF916  Bacterial protein of unknown function (DUF916)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.5e-08   5.5e-05      23     117 ..      61     150 ..      54     152 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.5e-08
      DUF916  23 vkpgqeqelevkikNssdkeitveitvntAvTndnGvidYskskekkdkslkvslselvkipkeitlpakesktvklkikmPkeefdGvilGGiy 117
                 ++pgq  + ++ ++N s +   +++++ + + +d+G  +  +s+e+     + +  + +++ +++t+ a+e+k v+++i++P+++  G    Gi 
  KIR64887.1  61 LDPGQVVTEHLAVRNFSATRAVFRLQAADGYLTDKGRFNMLPSTET-----SKDGGTWISVRDTVTVGANETKVVPFTITVPADAAPGDHPAGIA 150
                 689999999*******************************999888.....346999*******************************9998885 PP

>> fn3_5  Fn3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   7.2e-07    0.0026      13      87 ..      70     141 ..      64     149 .. 0.82
   2 ?   -2.4   0.1       2.1   7.6e+03      54      70 ..     278     294 ..     265     295 .. 0.59

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.2e-07
       fn3_5  13 tltlkNtsnkaltykvsan.dvlTdladkeegklilkaaspeikeaaltfetskvtvpAnssktvtvtldlpsdak 87 
                  l ++N+s ++++++++a  + lTd+       ++l+++++++++ +      +vtv+An++k v +t+++p da+
  KIR64887.1  70 HLAVRNFSATRAVFRLQAAdGYLTDKG----RFNMLPSTETSKDGGTWISVRDTVTVGANETKVVPFTITVPADAA 141
                 6889**************977788876....5666666666666667777789******************98875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.1
       fn3_5  54 ikeaaltfetskvtvpA 70 
                  + a ++ +t++vtv+A
  KIR64887.1 278 GTVADVRQATATVTVWA 294
                 33367777888888877 PP

>> NPCBM_assoc  NPCBM-associated, NEW3 domain of alpha-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   1.0   7.7e-07    0.0028      40      78 ..     115     153 ..     112     154 .. 0.88
   2 ?   -0.2   0.2      0.33   1.2e+03      53      63 ..     264     274 ..     234     294 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 7.7e-07
  NPCBM_assoc  40 spasaaslapGetveatvkVtppagaaaGdyevtakarl 78 
                  s++   ++ ++et  + +++t+pa+aa+Gd++  + a++
   KIR64887.1 115 SVRDTVTVGANETKVVPFTITVPADAAPGDHPAGIAASV 153
                  5566779*************************9988886 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.33
  NPCBM_assoc  53 veatvkVtppa 63 
                  +++tv+Vtp a
   KIR64887.1 264 LRTTVTVTPAA 274
                  56777777643 PP

>> FixG_C  IG-like fold at C-terminal of FixG, putative oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   7.3e-06     0.026      58     111 ..     110     161 ..      71     170 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.3e-06
                 S-EE.E.S--EEEE-TT-EEEEEEEEEE-GGG-SSSEEEEEEEEEEGGGTEEEE CS
      FixG_C  58 glelagraekeitvapgekrkvpvfvrvpaealkkkstpitfkvtdddeketve 111
                 g ++ +  ++++tv ++e++ vp++++vpa+a++   +p  + ++  +++ tv 
  KIR64887.1 110 GGTWIS-VRDTVTVGANETKVVPFTITVPADAAPG-DHPAGIAASVTSTGGTVA 161
                 445523.369********************99655.555555554223333333 PP

>> LEA_2  Late embryogenesis abundant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00022      0.78      34      84 ..     117     170 ..     114     185 .. 0.78
   2 ?   -0.8   0.0      0.65   2.3e+03      69      97 ..     210     238 ..     174     242 .. 0.65
   3 ?    0.7   0.1      0.21   7.6e+02      24      57 ..     246     279 ..     221     295 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00022
                 CE-EEESSSCEEEEEEEEEEEHHHHHHHHHHHH.....HCCSEEEEEEEEEEE. CS
       LEA_2  34 pqgfsqpargtttlevpvsvsaddlarelrall.ag..evgleleytlrgrlkv 84 
                 ++ ++++a+ t++++++++v+ad+++ +  a + a+  + g +++++ r++++v
  KIR64887.1 117 RDTVTVGANETKVVPFTITVPADAAPGDHPAGIaASvtSTGGTVAVESRVGFRV 170
                 56789*****************99966666666555558888999999999886 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.65
                 HCCSEEEEEEEEEEE.EEETTTSCEEEEE CS
       LEA_2  69 evgleleytlrgrlkvlgkpilgsvtvpv 97 
                 ++g ++   ++gr++v   ++l++++ +v
  KIR64887.1 210 ANGGNVWASGKGRVTVSEAFGLARRDTTV 238
                 45666666677777766666666665555 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.21
                 SSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHH CS
       LEA_2  24 ngqrlasgtspqgfsqpargtttlevpvsvsadd 57 
                 +g r+a++ + +   +++ +tt+  +p+++ +  
  KIR64887.1 246 GGSRVARASVGGVWGLGPLRTTVTVTPAALGDGT 279
                 4455555555555555555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2386.72
//
Query:       KIR64888.1  [L=208]
Description: hypothetical protein TK50_04745 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.063   13.5   0.1       0.12   12.6   0.1    1.5  1  SoxY      Sulfur oxidation protein SoxY


Domain annotation for each model (and alignments):
>> SoxY  Sulfur oxidation protein SoxY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   6.5e-06      0.12      17      40 ..      23      46 ..       9      76 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.5e-06
        SoxY 17 vkldaPeiAengavVpvtvsvdlp 40
                 +l aP+ Ae+ga V vtv+++  
  KIR64888.1 23 AALPAPALAEDGADVRVTVDIEEI 46
                4799****************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1456.51
//
Query:       KIR64889.1  [L=808]
Description: carbohydrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-29  100.9   0.8    3.7e-28   98.7   0.8    2.0  1  Glyco_hydro_43  Glycosyl hydrolases family 43
    1.1e-22   80.6   1.5    1.1e-22   80.6   1.5    3.5  4  CBM_6           Carbohydrate binding module (family 6)
      9e-22   77.8   1.8      9e-22   77.8   1.8    2.1  2  CBM_4_9         Carbohydrate binding domain
  ------ inclusion threshold ------
      0.021   14.9   2.0      0.029   14.5   0.1    2.2  2  DUF5010_C       DUF5010 C-terminal domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.8   8.3e-32   3.7e-28      32     288 .]     251     553 ..     221     553 .. 0.79

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 8.3e-32
                     E..................SEEEEEEESSSSSCEEEEECEESTTTCSTTTEECTEEEEEE....EETTEEEEEEEEEETTCCCSEEEEEEESSTT CS
  Glyco_hydro_43  32 f..................pglrifhSkdLvnWkqvgrvlerrsqlsmkgknasWAPeis....khdgkyylyytatkkgeakqgifvvtadspe 104
                                        +++++ +S+dLvnW+++g++ ++ ++   +   +sWAP +     + ++k++lyy+     +++ +  v+t +sp 
      KIR64889.1 251 GyapdpvtgispsinygniNQITLISSEDLVNWTDHGEIQVAGPNGVAPFTGNSWAPGMAkktvNGKEKFFLYYA-----NGGGSSNVLTGESPL 340
                     335666666666666666699**********************99999999999*****9666667899******.....6888899******** PP

                     S--EECEESSCS.........TSSECEEEEEEETTSEEEEEEEEEHCC.........CSEEEEEEEEEETTTTEEEEEEEEEEECGCCTCTTBBE CS
  Glyco_hydro_43 105 Gpwsdpiklkts.........gssgiDpslfedddGkkYlvwgqwdkr.........eghseiylaeldddtlklkgektklikagtelkglkvt 181
                     Gpw+     ++            + +Dp  ++dddG++Yl++g+ + +         ++ ++i +++l dd+ +++g++ +++ +          
      KIR64889.1 341 GPWTSERTSTLIngstpgaedVAWKFDPAPLVDDDGQAYLYFGGGPAStsmpaaerfNNPKNIRAIRLGDDMVSTQGSA-VVVDTPV------SF 428
                     ***998877655688999999999********************999999****999999*******************.6666666......89 PP

                     EEEEEEEETTEEEEEEE..............ESTSSTTEEEEEEEESSTTS.GGEEECTCCSEE.T..BTTSTSEEEEEEEEEE-TTSSEEEEEE CS
  Glyco_hydro_43 182 EGPhlykrdgyyYLlaa..............eggtgseyavvvarsksllg.Pyewkkknpiltsr..speepiqgpGHaslvetpdgewyivyh 259
                     E+ +++kr+g+yYL ++                g  +  ++++  s+++   P e++    +  ++     ++  g +H+s++e   g+ y++yh
      KIR64889.1 429 EAAQVFKRQGKYYLSYSshfggadfggnqtpLPGYPGGGQIGYLISDDPMSwPKETY-AGVLFPNQsqFFGAGTGGNNHQSVFEF-GGKYYFTYH 521
                     *******************88888554443333333346777799988877454444.44444554344467888999*******.777****** PP

                     EESC..CTTCCGTTS.SEEEEEEEEEETTSEE CS
  Glyco_hydro_43 260 agrp..egrglytlg.RetllqrvewkaDGwp 288
                     a +     +g++t+g R++++q++++++DG++
      KIR64889.1 522 APTLnkRINGNTTQGyRSPHIQELTFNPDGTI 553
                     **99764455555555**************95 PP

>> CBM_6  Carbohydrate binding module (family 6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.5   6.9e+03      22      58 ..      55      91 ..      48     121 .. 0.71
   2 ?   -1.3   0.1      0.56   2.5e+03      26      39 ..     142     155 ..     112     170 .. 0.64
   3 !   80.6   1.5   2.5e-26   1.1e-22       1     124 [.     576     705 ..     576     706 .. 0.91
   4 ?    2.7   2.2     0.033   1.5e+02      57     105 ..     737     783 ..     723     801 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
                SEEEE---TT-EEEEEEEEESSTEEEEEEEEEEESSS CS
       CBM_6 22 gkavgyinnGdwlaYkdvdfgsggaysvearvasgaa 58
                 ++ g+ ++G+ l+ +    + +ga  v+ r+++g++
  KIR64889.1 55 FVNNGNSTDGATLSATPDAYAGSGAALVTGRATTGSG 91
                5667777777777777666666666677777777765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.56
                 E---TT-EEEEEEE CS
       CBM_6  26 gyinnGdwlaYkdv 39 
                 +  ++G w ++++ 
  KIR64889.1 142 VVATKGQWAQFNGT 155
                 34566777777743 PP

  == domain 3  score: 80.6 bits;  conditional E-value: 2.5e-26
                 ETTCESEEES-EEEE--S.TT......TSEEEE---TT-EEEEEEEEESSTEEEEEEEEEEESSSEEEEEEEESSTTSSEEEEEEE---SSTTEEEEEE CS
       CBM_6   1 eAesydkqsgvslekata.ag......ggkavgyinnGdwlaYkdvdfgsggaysvearvasgaaggsielrldsatgtlvgtvsvpstggwqtyvtvs 92 
                 eAe++ +++g+ + k    ++       +  v  ++nGdw+a + vdfg++ga sv+a+v + aagg+i++rld+  g++vgtv+v  +  + ++ +v+
  KIR64889.1 576 EAETFGWSKGIATAKVDGgSAqfgtsaPNLVVRDVDNGDWTALSSVDFGTAGAASVTAKVRALAAGGRIQVRLDDVAGPVVGTVEV--DTPVGEWAEVT 672
                 79***********998874337888778888999***************************************************9..555566777** PP

                 EEEEE-SEEEEEEEEEECSST.---EEEEEEEE CS
       CBM_6  93 anvtlptGvhdlylvftggae.ylfnldwfkft 124
                 a+++ ++Gvhd+y++++g a+ +lf ld++kf 
  KIR64889.1 673 AALQGVSGVHDVYFTYSGPAGaDLFELDSWKFA 705
                 ******************999**********95 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.033
                 SSEEEEEEEESSTTSSEEEEEEE---SSTTEEEEEEEEEEE-SEEEEEE CS
       CBM_6  57 aaggsielrldsatgtlvgtvsvpstggwqtyvtvsanvtlptGvhdly 105
                 + ++ +++ l  a gt   t+  p  + +q+++t  ++v +  G+ +++
  KIR64889.1 737 GHTAPVDITLETAYGTRTVTAVAPGANAYQSFTTRATSVAA--GTATIR 783
                 22367777777766666666655666666666666665543..444444 PP

>> CBM_4_9  Carbohydrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   1.8     2e-25     9e-22       2     137 ..      40     177 ..      39     181 .. 0.91
   2 ?   -2.7   0.1       1.5   6.8e+03      68      68 ..     767     767 ..     715     802 .. 0.54

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 2e-25
                 BCCCECTSTTSTTTTSEECSSTC.EEEEECGC...SSSSEEEEEESCSSTTCEEEEEEECCS-TT-EEEEEEEEEESSTS...EEEEEEEEEESSTTSC CS
     CBM_4_9   2 nllkngtFedgglegWkargkss.gkasvdvs...yngtyslkvsgrgetwdgqaiditirlekgktYtvsfwvkassgk...srtikvkigdtdadga 93 
                 nl++ng+Fe+ g+ +W+++ ++s   a++  +   y g+ + +v+gr +t +g+++d   +++ g+tY + + +k++++    ++++ +++++ ++   
  KIR64889.1  40 NLIVNGGFEA-GVANWFVNNGNStDGATLSATpdaYAGSGAALVTGRATTGSGPMQDLSGKVQAGQTYALTARIKYENAAgpaTKQFFATMHYGGS--- 134
                 99********.9999988766654666666667899******************************************99999999*9***99999... PP

                 TCEEEEEEEEEESTSEEEEEEEEE-S.SCSCCEEEEEEEEC-SSS CS
     CBM_4_9  94 nydevadekvelkgewktlegtFtip.kstdenvelyvelgkpas 137
                 +y+++   +v+ kg+w ++ gtFtip  ++ +++++ +e++ ++s
  KIR64889.1 135 TYTNLVS-VVATKGQWAQFNGTFTIPaAQNVSTARIFFETP-WTS 177
                 ******9.********************************7.555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
                 E CS
     CBM_4_9  68 s 68 
                 s
  KIR64889.1 767 S 767
                 2 PP

>> DUF5010_C  DUF5010 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   6.5e-06     0.029      18      85 ..     606     675 ..     599     689 .. 0.83
   2 ?   -2.8   0.2       1.5   6.6e+03      60      95 ..     733     767 ..     702     786 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.5e-06
   DUF5010_C  18 nvtsteaGewlewkeipf.kaGavtlkvryattkeaakvrfvidgtagpsv.elpaTgglqewetvdagt 85 
                  v ++++G+w   ++++f  aGa  + +++ +  ++ ++++ +d++agp+v ++   + + ew +v a+ 
  KIR64889.1 606 VVRDVDNGDWTALSSVDFgTAGAASVTAKVRALAAGGRIQVRLDDVAGPVVgTVEVDTPVGEWAEVTAAL 675
                 68999*************5579999999999999***************874445455556999998875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.5
   DUF5010_C  60 dgtagpsvelpaTgglqewetvdagtlkieakgyht 95 
                 + t+g + ++  T +  ++ t  ++ +  +a++y+ 
  KIR64889.1 733 QATNGHTAPVDITLE-TAYGTRTVTAVAPGANAYQS 767
                 444455555555544.45555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 5395.57
//
Query:       KIR64890.1  [L=958]
Description: 1,4-beta-xylanase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-31  107.2   0.1    1.8e-30  106.2   0.1    1.5  1  GH43_C2         Beta xylosidase C-terminal Concanavalin A-lik
    6.8e-29  101.1   0.5      1e-28  100.5   0.5    1.3  1  Glyco_hydro_43  Glycosyl hydrolases family 43
    6.3e-18   65.4   0.0      2e-17   63.7   0.0    1.9  1  CBM_4_9         Carbohydrate binding domain


Domain annotation for each model (and alignments):
>> GH43_C2  Beta xylosidase C-terminal Concanavalin A-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.1     3e-34   1.8e-30       5     198 ..     562     777 ..     562     780 .. 0.80

  Alignments for each domain:
  == domain 1  score: 106.2 bits;  conditional E-value: 3e-34
     GH43_C2   5 dsdkLglqWqwlrnPkdedwyslterpgyLrLkgreslssk................eapsllarRqqafsftattklefepekegeeAGLvvyqneyh 87 
                 ++++L+l W w++ P+ ++++slt+r+g+LrL++++ ++ +                ea+++l +R+ +++ +a+t+++++ + +g+ AGL++y+    
  KIR64890.1 562 NGSRLDLAWEWNHAPD-NRYWSLTDREGWLRLTTGKVVTGQyvytklsnraelawfeEARNTLSQRTFGPRQSAETRMDISGMRNGDVAGLAAYNR--G 657
                 5789************.7888*************98665543444444445555555789*********************************985..6 PP

     GH43_C2  88 yyslevtkdekgkrvlrlvkadn.ge.......akeelkeekvplqtevkevyLrlevee......dkakfsysydgkeweeigeeldgtllsdefaeg 172
                 +++++v++  +g++ l +v++ + +         ++ l  + vpl++ ++ v+++++ +          +f+ys+dg +w+++g+++  ++l    a  
  KIR64890.1 658 FSYVAVKRV-DGQNTLGVVNRGQpFAvdldqaaLESFLPGTTVPLGD-ATVVHVKADLDFaspvgqLWTTFYYSLDGLTWTQLGNRVGPQTLDGSLA-- 752
                 777888877.8888888887544311222222256677888888888.6779999999874444324689***************999999999988.. PP

     GH43_C2 173 gFtGafvGlfatgngkessgyAdFdw 198
                 +F+G +vGlf++++ ++++g +dFd+
  KIR64890.1 753 HFMGHRVGLFNYAT-QATGGRVDFDH 777
                 **************.**********7 PP

>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.5   1.7e-32     1e-28       1     288 []      39     327 ..      39     327 .. 0.83

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 1.7e-32
                     EESESBCSSEESEEEEEE.......TTC.EEEEEEEBTEESEEEEEEESSSSSCEEEEECEESTT...TCSTTTEECT.....EEEEEEEETTEE CS
  Glyco_hydro_43   1 yrnPvlsgfypDpsilrv.......ged.yYlvtstfewfpglrifhSkdLvnWkqvgrvlerrs...qlsmkgknas.....WAPeiskhdgky 79 
                     y+ P l+ + pD s+ rv       g d yY++ +t    pg +i +S dLvnW++v++v++r s   ++s+++ ++s     WA ++++hdg y
      KIR64890.1  39 YTVPLLRSDVPDISVERVpaaendeGRDiYYMISTTMHLSPGAPIMKSYDLVNWETVNYVFDRASigdSFSLRNGQNSygqgqWASSLRYHDGMY 133
                     67799999999999998655544434569*********99***********************863337788999999***************** PP

                     EEEEEEEETTCCCSEEEEEEESSTT.S--EECEESSCSTSSECEEEEEEETTSEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEEEEEEEEECGC CS
  Glyco_hydro_43  80 ylyytatkkgeakqgifvvtadspe.GpwsdpiklktsgssgiDpslfedddGkkYlvwgqwdkreghseiylaeldddtlklkgektklikagt 173
                     y+ +     +++ +g ++   d++e G w+ +  l   g +  Dpslf+d dG+ Y+++g+  ++       +++l++  + ++++   +++a++
      KIR64890.1 134 YVAFN----TNNLNGAYIYRTDDIEnGAWQRTA-L---GRGLHDPSLFFDVDGTPYIFYGSGGTS-------AVRLNAGLTAIEQDYPNIFTAAD 213
                     ***99....688899*********99***9875.5...68999******************6665.......88888877777777744444444 PP

                     ...CTCTTBBEEEEEEEEETTEEEEEEEESTSSTTEEEEEEEESSTTSGGEEECTCCSEE.TBTTSTSEEEEEEEEEE-TTSSEEEEEEEESCCT CS
  Glyco_hydro_43 174 ...elkglkvtEGPhlykrdgyyYLlaaeggtgseyavvvarsksllgPyewkkknpiltsrspeepiqgpGHaslvetpdgewyivyhagrpeg 265
                        +   + + EG ++y++dg+yY ++ +   g+  +vv+ rsk+llg y  + + +  + r    + +g  ++slv ++       +h+     
      KIR64890.1 214 yagQPFIGGLFEGAQFYHIDGWYYAVIITWPSGQGRQVVMFRSKDLLGRYTSAGGVNTYEAR-GVLNSNGFAQGSLVPVARAGGGTDWHGMFF-- 305
                     75555566799**************9999999999******************999988875.777777778888877665444444444444.. PP

                     TCCGTTSSEEEEEEEEEETTSEE CS
  Glyco_hydro_43 266 rglytlgRetllqrvewkaDGwp 288
                     r+  ++gR ++l + +w+  Gwp
      KIR64890.1 306 RDTFPIGRIPALIPATWS-GGWP 327
                     45599*************.9998 PP

>> CBM_4_9  Carbohydrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   3.4e-21     2e-17       2     133 ..     396     524 ..     395     533 .. 0.90

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 3.4e-21
                 BCCCECTSTTSTTTTSEECSSTCEEEEECGCSSSSEEEEEESCSSTTCEEEEEEECCS-TT-EEEEEEEEEESSTSEEEEEEEEEESSTTSCTCEEEEE CS
     CBM_4_9   2 nllkngtFedgglegWkargkssgkasvdvsyngtyslkvsgrgetwdgqaiditirlekgktYtvsfwvkassgksrtikvkigdtdadganydevad 100
                 +ll n++Fe+g +++W a+ +++ + +  ++ +g+ +l+v +r+ + +g+ ++   +l+ g tYtvs+++k++sg ++++++ +  + +   +  +v++
  KIR64890.1 396 ELLGNAGFEAGSVSPWAAQFGATLALEPADAASGSAALRVGNRTLNGSGPNQNLAGKLQHGVTYTVSAKIKYTSG-PASVRFNLAADWG---SGVQVMT 490
                 6788******************9999888889*******************************************.8888888888877...5678888 PP

                 EEEEESTSEEEEEEEEE-S.SCSCCEEEEEEEEC CS
     CBM_4_9 101 ekvelkgewktlegtFtip.kstdenvelyvelg 133
                   ++  g+w+t++g++t p   +  nv+++ve++
  KIR64890.1 491 FGTVPVGQWTTVTGQYTFPaTANLANVKFAVETP 524
                 677777*************99999********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (958 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 6300.32
//
Query:       KIR64891.1  [L=436]
Description: cellulose-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-21   75.9  11.5      8e-21   74.3  11.5    1.9  1  CBM_2          Cellulose binding domain
     0.0091   15.5   0.0      0.015   14.8   0.0    1.3  1  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.024   14.4   0.0    1.3  1  Abhydrolase_2  Phospholipase/Carboxylesterase
      0.041   13.5   0.0      0.071   12.7   0.0    1.3  1  Abhydrolase_1  alpha/beta hydrolase fold
      0.051   13.1   0.0      0.051   13.1   0.0    2.4  2  Esterase_phd   Esterase PHB depolymerase
       0.17   11.2   0.0       0.25   10.6   0.0    1.2  1  Hydrolase_4    Serine aminopeptidase, S33
       0.33   10.4   2.8       0.59    9.6   2.8    1.4  1  FAM70          FAM70 protein


Domain annotation for each model (and alignments):
>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3  11.5   3.1e-24     8e-21       1      93 [.     340     432 ..     340     435 .. 0.94

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 3.1e-24
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S- CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsapts 93 
                 ++aty+  ++W +Gf+++vtv N++++++ngWtv++tl +gq + ++Wn+  +++  +vt++n+ +Ngt+a+ gs++fGf++++ g  ++  s
  KIR64891.1 340 CTATYRAVNSWPGGFQGEVTVANNTTATLNGWTVRLTLGSGQAISSVWNGVNTGTTGNVTVKNAAYNGTLAANGSTTFGFTATGDGPAPSNVS 432
                 89********************************************************************************99997655444 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.7e-06     0.015      55      92 ..     148     186 ..     128     192 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.7e-06
                   HHHTT.S--GGGEEEEEETHHHHHHHHHHHH-GGG-SEE CS
  Peptidase_S9  55 lakeg.yvdserlaitGgSyGGyltgaalnqrpdlFkaa 92 
                   +++++  vd+++ ++ G+SyGG ++ a++  rp + +a+
    KIR64891.1 148 VIENDlCVDTTQRFALGWSYGGAMSYAVACARPTVIRAV 186
                   56777799********************99999877766 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   9.4e-06     0.024     102     183 ..     155     230 ..     132     242 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.4e-06
                    --GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHHHHH CS
  Abhydrolase_2 102 ipssriiigGFSqGaalalylaltlpkklggivafsgalplsqklessatavtkklpilqiHgeeDpvvplalgkaakevlk 183
                    ++  + +  G S G+a++ + a + p+ ++ ++ +sga ++  +        t+ ++++ iHg  D v+++++g  +   + 
     KIR64891.1 155 VDTTQRFALGWSYGGAMSYAVACARPTVIRAVTVLSGANLSGCNPG------TQPVAYFGIHGIYDSVLNISMGRSLRDTFV 230
                    566666778****************************976554333......34578****************998877655 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.8e-05     0.071      75     106 ..     160     191 ..     127     205 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.8e-05
                    EEEEEETHHHHHHHHHHHHHGGGEEEEEEESE CS
  Abhydrolase_1  75 ltlvGhSmGGmialayaaeyperVkalvllga 106
                       +G+S+GG+++ a+a   p  ++a++ l++
     KIR64891.1 160 RFALGWSYGGAMSYAVACARPTVIRAVTVLSG 191
                    5589************************9998 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   2.1      0.61   1.6e+03     133     169 ..      16      52 ..       9      71 .. 0.53
   2 ?   13.1   0.0     2e-05     0.051      85     137 ..     146     198 ..     133     206 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.61
  Esterase_phd 133 lGeaadvisaldvmrrGlrqapaaavdalveagaypg 169
                      a  v++a  v+   l+qa  aa++    a a  g
    KIR64891.1  16 AAAALVVATAGGVLTGSLGQAAEAATNGTLAATAGCG 52 
                   4445555566666666666665555554444433333 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2e-05
  Esterase_phd  85 vdalvdehrvdaarvyvaGlsaGaaladllalhypdvfaavalhsGlalGeaa 137
                    + + ++  vd+++ +  G s G+a++  +a   p v  av++ sG  l   +
    KIR64891.1 146 SRVIENDLCVDTTQRFALGWSYGGAMSYAVACARPTVIRAVTVLSGANLSGCN 198
                   5667778899************************************9986655 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   9.6e-05      0.25      75     115 ..     157     198 ..     137     266 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.6e-05
  Hydrolase_4  75 elplfllGhSmGGliallyllrypdkva.glilsaPalkika 115
                  ++++f lG S GG+++ +++  +p  ++   +ls+++l+  +
   KIR64891.1 157 TTQRFALGWSYGGAMSYAVACARPTVIRaVTVLSGANLSGCN 198
                  4579*********************99977899999987654 PP

>> FAM70  FAM70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.8   0.00023      0.59     248     328 ..     243     328 ..     209     331 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00023
       FAM70 248 lsyagfyesapalppy.saydlqlqslfpasepsgesdlslsedaqppsqsasqs....sasylltsnapplyapayllpdekpPP 328
                  s  ++++ ++    + + y++q + +  +++ps    +s ++d+++ ++++  +     as++ +++app+++p+ ++p   pPP
  KIR64891.1 243 PSRGSLTHITTLYSGCrAGYPVQWAAFDGDHTPSPVDGSSSPNDSRTWTSGEIWKffsqFASTTPPTTAPPTSTPPTTPPPTTPPP 328
                 5555555555555555256******9999******999999999888777665440000344444555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2870.66
//
Query:       KIR64892.1  [L=408]
Description: hypothetical protein TK50_04775 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.074   12.4   0.0       0.13   11.6   0.0    1.3  1  Slp       Outer membrane lipoprotein Slp family


Domain annotation for each model (and alignments):
>> Slp  Outer membrane lipoprotein Slp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.5e-06      0.13      78     129 ..     164     214 ..     161     233 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.5e-06
         Slp  78 larvegFlDPaiykkgrlvTvvGtlkgsetgkigeadytypvvevkgvklWp 129
                  ++ +g +DPa +k g+ vTv+G+ + + t ++g  + + p v+ +++  W+
  KIR64892.1 164 TVYRPGAFDPARIKDGKKVTVAGRKAVQATLPVGLDP-QGPAVAGNKLFAWE 214
                 57888999*************************9655.66888888888883 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2949.15
//
Query:       KIR64893.1  [L=316]
Description: hypothetical protein TK50_04785 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-06   25.9   2.6    2.5e-05   24.4   0.1    2.7  3  NPCBM_assoc      NPCBM-associated, NEW3 domain of alpha-galac
  ------ inclusion threshold ------
      0.046   13.7   1.7      0.086   12.8   1.7    1.4  1  Gram_pos_anchor  LPXTG cell wall anchor motif
       0.57   10.5  10.2      0.046   14.0   4.4    2.3  3  DUF11            Domain of unknown function DUF11


Domain annotation for each model (and alignments):
>> NPCBM_assoc  NPCBM-associated, NEW3 domain of alpha-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.14   8.1e+02      50      78 ..      22      50 ..      14      62 .. 0.63
   2 !   24.4   0.1   4.2e-09   2.5e-05       2      54 ..     105     156 ..     104     160 .. 0.89
   3 ?   -3.2   0.1       1.8   1.1e+04      13      24 ..     191     202 ..     185     208 .. 0.41

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.14
  NPCBM_assoc 50 GetveatvkVtppagaaaGdyevtakarl 78
                 G   +++v V +    aaG ye +++a++
   KIR64893.1 22 GPGETVDVPVDATVYGAAGPYEGKFEASV 50
                 55555555555555555666666666554 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 4.2e-09
  NPCBM_assoc   2 epGetvtltltvtndgtaaatnvslslslPeGWtvvevspasaaslapGetve 54 
                   pGet +++ tv+n+g++a+++v+++l+lPeG t  +++p++    ++G+++ 
   KIR64893.1 105 HPGETGAVRHTVANQGRKAVSGVRVTLRLPEGAT-FTSQPTECVLADAGRSAV 156
                  69******************************99.888999888888887765 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.8
  NPCBM_assoc  13 vtndgtaaatnv 24 
                  ++ +  a+++++
   KIR64893.1 191 ASATAPATLRGG 202
                  333333333333 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.7   1.4e-05     0.086       7      40 ..     269     303 ..     266     304 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
                      -XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor   7 kqLPkTG.engnifltaaGllallggllLlvkrRK 40 
                      + LP TG  +g i+   +++la+ ++l+L+ +rR+
       KIR64893.1 269 GGLPVTGpQAGLIGGIGVAALAVGAALFLAARRRR 303
                      57999****************************98 PP

>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.4   1.4e+04      12      23 ..      23      34 ..      21      40 .. 0.72
   2 ?   14.0   4.4   7.6e-06     0.046       9      52 ..     103     172 ..      86     215 .. 0.70
   3 ?   -2.5   0.0       1.1   6.7e+03      39      51 ..     225     237 ..     221     248 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.4
       DUF11 12 pGdtvtytltvt 23
                pG+tv++ + +t
  KIR64893.1 23 PGETVDVPVDAT 34
                788888888777 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 7.6e-06
       DUF11   9 evrpGdtvtytltvtNtgpasangvvvtDtlPaglayvsvsas..........................q 52 
                 ++ pG+t  +  tv N+g ++ +gv+vt  lP+g ++ s  +                            
  KIR64893.1 103 TLHPGETGAVRHTVANQGRKAVSGVRVTLRLPEGATFTSQPTEcvladagrsavctyesltlvpavedtD 172
                 789**********************************999999888776666655444444444444431 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.1
       DUF11  39 lPaglayvsvsas 51 
                 lPa+  +v+v  +
  KIR64893.1 225 LPANAVAVRVADT 237
                 5555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2089.99
//
Query:       KIR64894.1  [L=84]
Description: hypothetical protein TK50_04790 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.49
# Mc/sec: 517.40
//
Query:       KIR64895.1  [L=531]
Description: 4-phytase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-83  279.1   0.1    7.3e-83  278.6   0.1    1.2  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.6   0.1   4.1e-87   7.3e-83       2     371 ..      77     435 ..      76     440 .. 0.95

  Alignments for each domain:
  == domain 1  score: 278.6 bits;  conditional E-value: 4.1e-87
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESSETTTTTTHCHHHHHHH CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkkpnalfltllaavpasi 100
                 +vpaLA ++++vs+Dg+t+t +LR+gv F+DGtpltA+Dvvf+++ +ldp+  s+ +s+l+     ++v+a+d+ tv+ftlk+p+a+fl+ la  + ++
  KIR64895.1  77 LVPALARDLPTVSADGRTVTARLREGVLFHDGTPLTAQDVVFTYRAVLDPKVDSTLRSDLD---MLASVTAPDPATVVFTLKHPYAPFLQRLALGIVPA 172
                 79**********************************************************5...***********************999999877766 PP

                 GCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCCTHCHHHHHTTEEEEE CS
   SBP_bac_5 101 akkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddvaepppsdieqlkeakglkvly 199
                    a + +d +++++n+ pvgtGPY++++++pg+++vl + +  w gg+pk   +++ +++d+++ra+ +++Ge  d+ae+ p+ +  ++ + g+ v +
  KIR64895.1 173 K--AFAGQDVNKAEFNRRPVGTGPYRVTAWTPGDRLVLAAYDKHW-GGRPKNPGVVVAFVADDNVRAQRMRAGEF-DAAELAPKLATGFDGQGGYRV-Q 266
                 6..889***************************************.*****************************.999******************.* PP

                 EEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHHHTT-BCSSTSCEETC..E CS
   SBP_bac_5 200 espgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLkeaGykdgdggglrek..k 296
                 + p++ +  +++ + +p+  d ++R+Al+ A+Dr+++v+ vl+g ++pa +++ppss  a ++        dp++A + L++aG+  g++g +     +
  KIR64895.1 267 RVPTADYRGVMLPMGNPVTGDLAIRRALNTAVDRQAMVTGVLGGAGEPAFGPVPPSSEFAEPSIVGRAA-ADPAAATATLDAAGWRPGPDGIRARGgrQ 364
                 ************************************************************999999875.6******************8877777*** PP

                 EEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHS CS
   SBP_bac_5 297 lkltlllasgspaekaiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpfls 371
                   +tl+++++++++k++a +++++ kk+Gi+v+ +++ w    ++ + + + d+ ++g+g+ y ++  ++  f s
  KIR64895.1 365 AAFTLMYPATDSLRKELALAVTADAKKVGIRVTPEGLTW----DAITPRMKTDALVMGYGTPYDPDFVSYKLFGS 435
                 *************************************99....55599999******999887776666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3888.05
//
Query:       KIR64896.1  [L=334]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-38  131.7  12.5    4.8e-38  130.7  12.5    1.5  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7  12.5   2.7e-42   4.8e-38       2     184 ..     130     331 ..     129     332 .. 0.99

  Alignments for each domain:
  == domain 1  score: 130.7 bits;  conditional E-value: 2.7e-42
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvf....................vilsilghlilpviillllsaapyvrlirraalrs 78 
                   +llG laa++r++++d++lr   ++++s+P+f++++  ++vf                       +++ hlilpv +l++ +a+++v+++r a+ +s
    KIR64896.1 130 VLLGTLAAYRRGGWFDRALRAAAYAVQSMPVFWIGLAAIAVFalalgwlpaggltditatgtDPADVARHLILPVTVLAISQAPWFVLFVRDAVAES 226
                   89***********************************99999********************99999****************************** PP

  BPD_transp_1  79 lpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadil 175
                   l +d+v aara+G++ +++++ ++l+ al p++t+++  ++ l+ggavl+e+++s pGlg +++ a lg d+++ + +++l+++++vl+ +l++d+ 
    KIR64896.1 227 LRDDHVLAARARGLPGRTVLFGHALRTALLPFLTLVGTHLPELVGGAVLVETVFSLPGLGAVTVAAALGADFPLLA-ATTLTTTVVVLAASLATDLA 322
                   ****************************************************************************.******************** PP

  BPD_transp_1 176 qrlldprvr 184
                   +++ dprvr
    KIR64896.1 323 YAAADPRVR 331
                   *******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2585.46
//
Query:       KIR64897.1  [L=295]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-24   84.6   8.0    6.7e-24   84.6   8.0    1.6  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.25   10.5   0.4       0.44    9.7   0.0    1.5  2  Bac_export_2  FlhB HrpN YscU SpaS Family
       0.63    9.4   4.5          1    8.7   4.5    1.3  1  DUF3482       Domain of unknown function (DUF3482)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.57   3.4e+03      58      72 ..      30      44 ..      19      62 .. 0.52
   2 !   84.6   8.0   1.1e-27   6.7e-24       1     184 [.     106     290 ..     106     291 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.57
  BPD_transp_1 58 illllsaapyvrlir 72
                  +++ + aa++++ + 
    KIR64897.1 30 VAVGVLAAAVAVCLL 44
                  333333333333333 PP

  == domain 2  score: 84.6 bits;  conditional E-value: 1.1e-27
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g l+G++a+   ++++d+ l+++++++ +lP+++l+i++v        l  +  + ++ ++l++++ ++r++r++ l+ + + +v aa   Gasr +
    KIR64897.1 106 GGLVGAVAG-TLGGRVDRTLMRVVDTVAALPHLLLGIFVV------AMLRPGLGAvIASIGLTHWLSTARIVRSELLSLRTRPFVDAAISGGASRTR 195
                   568999999.9*****************************......8889888888999************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis...........nggvlalviavlllnlvadilqrlldpr 182
                   ++ +++lP++lp ++    l +++++ + ++l+flg    lg++   a++g++++ ++           +++ l lv+++l+l +++  + + ldpr
    KIR64897.1 196 VLTRHLLPHVLPRLALATTLMVPHAVWHETALSFLG----LGLPPHLASIGNMINDGQrslltgawwasIVPGLLLVAVTLALAVLTGRWRDRLDPR 288
                   ************************************....**************************999999999********************** PP

  BPD_transp_1 183 vr 184
                   vr
    KIR64897.1 289 VR 290
                   98 PP

>> Bac_export_2  FlhB HrpN YscU SpaS Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   7.4e-05      0.44      72     187 ..      31     145 ..      19     149 .. 0.87
   2 ?   -2.8   0.1      0.46   2.7e+03      68      84 ..     256     272 ..     201     281 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 7.4e-05
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2  72 llllllplllvlllaallanllqvgflfstkalkpklsklnplkglkrifslrslvellksllkvvlvgavaylvlkseleellalaeldleaalel 168
                   ++ +l+  ++v+lla ll  l q  + ++  +l+p  ++l     l r + lrsl+ l  sll v +v+a +++v+ + ++++++++  +++++l  
    KIR64897.1  31 AVGVLAAAVAVCLLAPLLWPLDQSAVDLARTRLAPSPDHLAGTDDLGRDVALRSLYGLRVSLL-VGAVAAGVATVVGGLVGAVAGTLGGRVDRTLMR 126
                   45678889999*********************************************9999988.566666666778899999999999999999999 PP

                   XXXXXXXXXXXXXXXXXXX CS
  Bac_export_2 169 llslllkllllvllallvi 187
                   +++++++l  l+l++++v 
    KIR64897.1 127 VVDTVAALPHLLLGIFVVA 145
                   9999999988888888775 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.46
                   XXXXXXXXXXXXXXXXX CS
  Bac_export_2  68 lllallllllplllvll 84 
                   + +a +   l l++v+l
    KIR64897.1 256 AWWASIVPGLLLVAVTL 272
                   22222222222222222 PP

>> DUF3482  Domain of unknown function (DUF3482)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.5   0.00017         1     160     199 ..      86     125 ..      77     139 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00017
     DUF3482 160 aGagiDlavgGltLGaaaaiGalaGglaatlkrygkrlla 199
                  G+ + l+vg +  G+a+++G+l+G++a+tl+   +r l 
  KIR64897.1  86 YGLRVSLLVGAVAAGVATVVGGLVGAVAGTLGGRVDRTLM 125
                 68889999**********************9877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2180.60
//
Query:       KIR64898.1  [L=331]
Description: peptide ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-19   69.5   0.0    5.4e-19   69.1   0.0    1.2  1  ABC_tran      ABC transporter
    4.9e-16   59.0   0.3    9.3e-16   58.1   0.3    1.5  1  oligo_HPY     Oligopeptide/dipeptide transporter, C-terminal 
    8.8e-06   25.7   0.0    0.00056   19.8   0.1    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    7.9e-05   23.1   1.0    0.00017   22.0   1.0    1.6  1  AAA_16        AAA ATPase domain
    0.00025   21.3   0.0    0.00083   19.6   0.0    1.9  1  AAA_22        AAA domain
     0.0079   15.6   0.0        2.5    7.5   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.017   14.5   0.1      0.047   13.1   0.1    1.6  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.045   13.3   0.6       0.37   10.3   0.1    2.2  2  AAA_25        AAA domain
      0.073   13.0   0.0       0.15   11.9   0.0    1.5  1  NACHT         NACHT domain
      0.078   12.7   0.0       0.16   11.8   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
       0.12   12.3   0.0       0.19   11.6   0.0    1.2  1  RsgA_GTPase   RsgA GTPase
       0.16   12.0   0.1       0.31   11.0   0.1    1.4  1  AAA_5         AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   3.6e-22   5.4e-19       2     136 ..      36     195 ..      35     196 .. 0.75

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 3.6e-22
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE...........EETTCEGGG..........B-HHHCCHCEEEE-SS..--S-TTSBHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxx..........xxxxxxxxxxxxxxxx..xxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGei...........lldgkdlke..........qeleslrkeigvlpqe..pqlfpeltvr 77 
                  ++sl+l++ge++a+vGe+G+GKS L+ +l+gll   + ++           +                   ++++  + +g +pq   + l p   vr
  KIR64898.1  36 TDLSLTLHPGELLAVVGESGCGKSVLAHALLGLLP-RNATVtgrahlhppdgH-------PvdlveagerhLTRHVRGRAVGLVPQSpaTALTP---VR 123
                 689******************************96.55555333344433330.......2444777777677899999********5333333...34 PP

                 HH................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  78 en................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +                 ++ + ++++++ +gl+      +++ p++LSgG+ qr+a a al+ +p+lll+DEpt
  KIR64898.1 124 SGrrlleetlrahghtrrTAPAAADRIAADVGLDP---GDLDRYPHELSGGMAQRLATALALAPDPPLLLADEPT 195
                 43446888899987655544555888888888877...4456669*****************************9 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.3   6.2e-19   9.3e-16       1      65 []     246     305 ..     246     305 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 6.2e-19
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekdklekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE  p+++lfd p+HPYT++Ll+++p+      + + ++g++p l++l++GC FapRCp a+++C
  KIR64898.1 246 VEHRPTAALFDAPAHPYTAGLLDALPDR-----AFTPVPGHPPMLTDLPDGCAFAPRCPRATDAC 305
                 89************************98.....46678*************************** PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.025        38       3      23 ..      49      69 ..      47      93 .. 0.84
   2 !   19.8   0.1   3.8e-07   0.00056     227     299 ..     158     227 ..     128     229 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.025
      AAA_21  3 vliGpNgsGKSnLLdaldlla 23
                +++G  g+GKS L  al +l 
  KIR64898.1 49 AVVGESGCGKSVLAHALLGLL 69
                79***************9984 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 3.8e-07
      AAA_21 227 gdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHSp 299
                 +++ ++ ++elS G+ +   l+tal+ a+++ +lll DEp +gL+  l+ + l+ll +++ + ga v+l TH+ 
  KIR64898.1 158 PGDLDRYPHELSGGMAQR--LATALALAPDP-PLLLADEPTTGLDRPLVDHTLDLLrRRCDT-GAAVLLITHDL 227
                 677888999******998..55555555555.************************999988.*********96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   1.0   1.1e-07   0.00017       5     131 ..      28     184 ..      24     232 .. 0.52

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.1e-07
      AAA_16   5 ReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql.esaipysalaqalareellrqllde..........aesa 92 
                 R++ +++++++  +++ g  el+ ++GesG+GKs l+ +ll  l ++   +++g+++ + + + p + l++a +r +l r +  +          ++ +
  KIR64898.1  28 RGAVVHAVTDLSLTLHPG--ELLAVVGESGCGKSVLAHALLGLLPRN--ATVTGRAHLHpPDGHP-VDLVEAGER-HLTRHVRGRavglvpqspaTALT 120
                 566666666666666666..89*******************888888..4555555555323322.233444422.44444433322223333331111 PP

      AAA_16  93 eleawrekleeala.........................avpelagaea.......srllellkrllalls 131
                  ++  r+ lee+l+                         +                  +++ l+ +lal++
  KIR64898.1 121 PVRSGRRLLEETLRahghtrrtapaaadriaadvgldpgDL-------DryphelsGGMAQRLATALALAP 184
                 22222222222222444444444334444444333444422.......23332222444444444444433 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.5e-07   0.00083       6      70 ..      46     114 ..      42     230 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.5e-07
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee....erpevvfvtlpsstsskdllrellralglelka 70 
                  +l+v+GesG+GK++l+  ll  l++ a  +     ++p+   v+l + +++   ++   ra+gl   +
  KIR64898.1  46 ELLAVVGESGCGKSVLAHALLGLLPRNATVTGrahlHPPDGHPVDLVEAGERHLTRHVRGRAVGLVPQS 114
                 5799********************999888888888444444444444443333333333333333333 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0017       2.5      26      47 ..      47      68 ..      35      80 .. 0.82
   2 !    6.2   0.0    0.0041       6.1     136     213 ..     167     241 ..     125     247 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0017
                EEEEEESTTSSHHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldAilFv 47
                + a+vG+ G+GKs l  A+l +
  KIR64898.1 47 LLAVVGESGCGKSVLAHALLGL 68
                569***************9655 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0041
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgvtk 213
                 +LSgG  + +a aL +A       pl l De    LD   v    +ll+++ ++ a ++ i+++ +  +++  +v v+ 
  KIR64898.1 167 ELSGGMAQRLATALALA----PDPPLLLADEPTTGLDRPLVDHTLDLLRRRCDTgAAVLLITHDLTAARRVADTVAVMY 241
                 79999888888887776....4579************************98877699******9998888877777665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.1e-05     0.047      24      49 ..      47      72 ..      32      78 .. 0.84
   2 ?   -2.8   0.0       2.2   3.3e+03     176     195 ..     159     178 ..     148     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.1e-05
  Mg_chelatase 24 nlllvGppGsGKtmlakrlpsllppl 49
                   l +vG +G+GK++la++l +llp+ 
    KIR64898.1 47 LLAVVGESGCGKSVLAHALLGLLPRN 72
                  56789*******************75 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.2
  Mg_chelatase 176 keierYlsklsgplldRidl 195
                    + +rY + lsg +  R+  
    KIR64898.1 159 GDLDRYPHELSGGMAQRLAT 178
                   56789999999999999865 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00025      0.37      31      65 ..      43      77 ..      38     158 .. 0.63
   2 ?    0.9   0.0      0.19   2.9e+02     172     188 ..     210     225 ..     198     226 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00025
      AAA_25 31 pagelallaGapgtGKttlaldlalavatGkpwlg 65
                  gel +++G +g+GK++la  l   + +   ++g
  KIR64898.1 43 HPGELLAVVGESGCGKSVLAHALLGLLPRNATVTG 77
                5699***************9888655444444444 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.19
      AAA_25 172 leriarrtgaavllvhH 188
                 l+r    tgaavll+ H
  KIR64898.1 210 LRRR-CDTGAAVLLITH 225
                 4443.3899*******9 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0001      0.15       2      23 ..      47      68 ..      46      79 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0001
                CEEEEC-TTTCHHHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqklala 23
                l+++ Ge+G+GK++L++ l  +
  KIR64898.1 47 LLAVVGESGCGKSVLAHALLGL 68
                6899*************98765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0001      0.16      16      46 ..      39      69 ..      33      76 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0001
      AAA_29 16 tieidlkgatlltGpsGsGKSTllDAiqalL 46
                ++++++ +   ++G+sG GKS l  A+  lL
  KIR64898.1 39 SLTLHPGELLAVVGESGCGKSVLAHALLGLL 69
                56778777899************99988776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00013      0.19      90     121 ..      35      67 ..      18      82 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallp 121
                  +++l+  l+  ++ ++vG+SG GKS L  all+
   KIR64898.1  35 VTDLSLTLHPgELLAVVGESGCGKSVLAHALLG 67 
                  56677777766999**************99986 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00021      0.31       4      28 ..      50      74 ..      48      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
                EE--SSSSHHHHHHHGGGGBS--EE CS
       AAA_5  4 LvGppGtgKselaerlaaalnreve 28
                +vG++G+gKs la  l+ +l r+ +
  KIR64898.1 50 VVGESGCGKSVLAHALLGLLPRNAT 74
                69******************77665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2225.33
//
Query:       KIR64899.1  [L=231]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-26   92.3   0.0    4.6e-26   92.0   0.0    1.1  1  ABC_tran        ABC transporter
      2e-05   25.0   1.6    3.1e-05   24.4   1.6    1.3  1  AAA_16          AAA ATPase domain
    0.00025   21.0   0.0      0.055   13.3   0.0    2.1  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    0.00099   19.1   0.1      0.062   13.2   0.0    2.7  3  NACHT           NACHT domain
     0.0012   19.1   0.0     0.0027   18.0   0.0    1.5  1  AAA_22          AAA domain
     0.0017   18.9   0.1      0.045   14.3   0.0    2.3  2  AAA_18          AAA domain
     0.0019   17.9   0.0      0.004   16.9   0.0    1.5  1  AAA_29          P-loop containing region of AAA domain
     0.0078   15.8   1.1      0.016   14.8   1.1    1.7  1  AAA_25          AAA domain
  ------ inclusion threshold ------
      0.012   15.8   0.2       0.02   15.0   0.2    1.8  1  AAA_33          AAA domain
      0.012   15.3   2.0      0.035   13.8   0.5    2.3  2  AAA_30          AAA domain
      0.016   14.7   0.0       0.92    8.9   0.0    2.1  2  SMC_N           RecF/RecN/SMC N terminal domain
      0.026   14.3   0.1      0.045   13.5   0.1    1.3  1  Cytidylate_kin  Cytidylate kinase
      0.042   13.6   0.0        0.9    9.3   0.0    2.1  2  IstB_IS21       IstB-like ATP binding protein
      0.047   13.6   0.0      0.079   12.9   0.0    1.3  1  RsgA_GTPase     RsgA GTPase
      0.071   12.5   0.0       0.12   11.8   0.0    1.4  1  Mg_chelatase    Magnesium chelatase, subunit ChlI
       0.12   12.2   0.0       0.21   11.5   0.0    1.4  1  APS_kinase      Adenylylsulphate kinase
       0.15   11.7   0.0        2.2    7.9   0.0    2.2  2  CoaE            Dephospho-CoA kinase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   4.4e-29   4.6e-26       1     137 []      32     183 ..      32     183 .. 0.87

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 4.4e-29
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TTSBHHHH.............HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx.............xx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpeltvren.............es 81 
                 l++v+l++ +ge+v++ G++G+GKStL+++la l+ p++G++++dg+++     +    lr ++++l+q   +  +p+l++++              ++
  KIR64899.1  32 LDRVDLHIAPGETVGLRGPSGSGKSTLARVLALLHAPDSGHVTIDGRPVGGarhRLPVALRTRVAILFQSprSATDPRLSLADLiaeplratgasrdQA 130
                 789**********************************************99765555689**********777788888888889*******9744444 PP

                 HTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  82 deeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                     ++ ++  +l++l+ + + ++p+ +S Gq qr +laral+ +p+ ll+DE+ta
  KIR64899.1 131 ---SARTADLADLVGLTPDLLARRPHAVSDGQLQRACLARALVHRPDYLLCDEATA 183
                 ...4455555555666668888999*****************************96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   1.6     3e-08   3.1e-05       6     164 ..      29     202 ..      25     211 .. 0.50

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 3e-08
      AAA_16   6 eeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesa.ipysalaqalareellrqllde..aesaeleawrek 100
                 ++ l+++   +     ++ e v l+G+sG+GKs+l+r l+     d g++ + g+ +   +  +       al r + ++ l +   ++++ +   ++ 
  KIR64899.1  29 QRVLDRVDLHIA----PG-ETVGLRGPSGSGKSTLARVLALLHAPDSGHVtIDGRPVGGARHrL-----PVAL-R-TRVAILFQSprSATDPRLSLADL 115
                 444444444333....22.7899*************9999533333366668888888833332.....2222.2.22222222211222222222333 PP

      AAA_16 101 leeala.......avpelagaea......................srllellkrll.allsrderplvlvlDdlqwadeaslql.laaLlrlles 164
                 + e l+       +       ++                           +l+r+  a++   +rp +l++D++    +as q+  aa +++ ++
  KIR64899.1 116 IAEPLRatgasrdQ-------ASartadladlvgltpdllarrphAVSDGQLQRAClARALV-HRPDYLLCDEATAMLDASTQAhVAAVVTDYQR 202
                 33333322222220.......11122122122222223335455555555555555566665.66899999999988888888877777777555 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.2e-05     0.055       6      41 ..      49      82 ..      45      89 .. 0.85
   2 !    5.8   0.0    0.0096        10     232     303 .]     150     219 ..     129     219 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.2e-05
      AAA_21  6 GpNgsGKSnLLdaldllarldrdvegltdelsgggg 41
                Gp gsGKS+L + l ll+  ++d+ + t++ ++ gg
  KIR64899.1 49 GPSGSGKSTLARVLALLH--APDSGHVTIDGRPVGG 82
                9****************9..8888888888877665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0096
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHSpllld 303
                 + ++ +SdG+++ ++l+ al  ++   + ll DE  + L+ + +++++ ++ ++ +r  a v+l TH+p l++
  KIR64899.1 150 RRPHAVSDGQLQRACLARALVHRP---DYLLCDEATAMLDASTQAHVAAVVtDYQRRSSAGVLLITHDPALMS 219
                 567789999999999999999999...669999999999999999999888555555999***********96 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   5.9e-05     0.062       2      23 ..      44      65 ..      43      73 .. 0.87
   2 ?    2.1   0.0      0.15   1.6e+02      36      71 ..      95     129 ..      83     153 .. 0.75
   3 ?   -0.4   0.0      0.88   9.3e+02      51      76 ..     166     197 ..     153     211 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.9e-05
                CEEEEC-TTTCHHHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqklala 23
                +v l+G++GsGK+tL++ lal+
  KIR64899.1 44 TVGLRGPSGSGKSTLARVLALL 65
                6889*************99976 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.15
                 EEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C CS
       NACHT  36 lvFflslrelsrsgnarsladllfsqlpepaapvse 71 
                 + +++++ +  ++ +  sladl++++l + +a  ++
  KIR64899.1  95 VAILFQSPRSATDPRL-SLADLIAEPLRATGASRDQ 129
                 5555555555555555.********99999888776 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.88
                 ......-HCHHHCCCCTS--SSS-C..CHHHH CS
       NACHT  51 a....rsladllfsqlpepaapvse..vwavl 76 
                 a     ++++ll+++  +  +++++  v av+
  KIR64899.1 166 AralvHRPDYLLCDEATAMLDASTQahVAAVV 197
                 34445789999999999999888886544444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.5e-06    0.0027      12     105 ..      49     188 ..      45     214 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.5e-06
      AAA_22  12 GesGtGKTtllrrlleqldeeakaee..................erpevvfvtlpsstsskdllrellralglelka...................... 70 
                 G+sG+GK+tl+r l+  +  ++ + +                     + v +  +s+ s +d +  l+  + ++l a                      
  KIR64899.1  49 GPSGSGKSTLARVLALLHAPDSGHVTidgrpvggarhrlpvalrT--R-VAILFQSPRSATDPRLSLADLIAEPLRAtgasrdqasartadladlvglt 144
                 9***************99655555559999***999777775322..2.24444444444444444444444444444444555999999999999999 PP

      AAA_22  71 ...erlsseell.ealeqalrarav...ielliiDEaqh.lr.s 105
                       + +++   +l++a+ ara    +  l+ DEa   l+ s
  KIR64899.1 145 pdlLARRPHAVSdGQLQRACLARALvhrPDYLLCDEATAmLDaS 188
                 99866677777778888888888888888999999998855452 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.3e-05     0.045       1      20 [.      45      64 ..      45      94 .. 0.87
   2 ?    2.5   0.0       0.2   2.1e+02      93     114 ..     199     225 ..     177     229 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.3e-05
      AAA_18  1 IlltGtpGvGKttlakeLsk 20
                ++l G++G+GK+tla+ L+ 
  KIR64899.1 45 VGLRGPSGSGKSTLARVLAL 64
                6789*************964 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.2
      AAA_18  93 dikk.....vvLtaspeelleRlekRg 114
                 d+++     v L +++  l+ R ++R 
  KIR64899.1 199 DYQRrssagVLLITHDPALMSRWATRV 225
                 333333446**************9996 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.7e-06     0.004      13      39 ..      33      59 ..      30      73 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.7e-06
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                d+ +++i + +++ l GpsGsGKSTl 
  KIR64899.1 33 DRVDLHIAPGETVGLRGPSGSGKSTLA 59
                55678888888999***********96 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.1   1.5e-05     0.016      25      63 ..      34      80 ..      27     214 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-05
      AAA_25 25 lvkgllpagelallaGapgtGKttlaldlalava........tGkpw 63
                 v+ +++ ge++ l G++g+GK+tla  lal  a         G+p+
  KIR64899.1 34 RVDLHIAPGETVGLRGPSGSGKSTLARVLALLHApdsghvtiDGRPV 80
                57789999**********************98887733333444444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.2   1.9e-05      0.02       4      20 ..      47      63 ..      45     227 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-05
      AAA_33  4 lvGlpGsGKstlaerll 20
                l G++GsGKstla+ l+
  KIR64899.1 47 LRGPSGSGKSTLARVLA 63
                68************985 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.2   2.4e+03      48      66 ..       8      26 ..       4      38 .. 0.80
   2 ?   13.8   0.5   3.3e-05     0.035      20     115 ..      44     200 ..      33     214 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.2
      AAA_30 48 rviglAptgkaAkvLaeel 66
                +v+g+A  g aA++++ + 
  KIR64899.1  8 TVHGAAAGGLAAQRVTVAY 26
                7899999999999987555 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.3e-05
      AAA_30  20 vavltGpAGtGKttalkalreaweaa.g.....................grviglAptgkaAkvLa..................eelgieastiakllk 78 
                 ++ l Gp G+GK+t+ ++l+ +++ + g                      rv++l  + + A + +                  +++ ++++ +a l+ 
  KIR64899.1  44 TVGLRGPSGSGKSTLARVLALLHAPDsGhvtidgrpvggarhrlpvalrTRVAILFQSPRSATDPRlsladliaeplratgasrDQASARTADLADLV- 141
                 67899***************999998678888887777776655555553333333333333321133555555555443333323333444444444. PP

      AAA_30  79 rlk.......................grarlepgtllivDEa.gmvdtkqlaallkaaeka 115
                   +                       +ra +++ + l+ DEa +m+d+++ a++++ ++++
  KIR64899.1 142 --GltpdllarrphavsdgqlqraclARALVHRPDYLLCDEAtAMLDASTQAHVAAVVTDY 200
                 ..24458888888888899999999876778888999999983466777777777776664 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.031        32      28      41 ..      46      59 ..      29      67 .. 0.75
   2 ?    8.9   0.0   0.00087      0.92     162     204 ..     176     220 ..     126     228 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.031
                EEEESTTSSHHHHH CS
                xxxxxxxxxxxxxx RF
       SMC_N 28 aivGpNGSGKsnll 41
                 + Gp GSGKs l 
  KIR64899.1 46 GLRGPSGSGKSTLA 59
                478********986 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00087
                 EEECTTTTTS-HHHHHHHHHHHH..HHCTTSEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 162 yllDeidaaLDeknvkkvaellk..eksknaQfivislreemlek 204
                  l De  a LD++  + va ++   +++++a ++ i+++  ++++
  KIR64899.1 176 LLCDEATAMLDASTQAHVAAVVTdyQRRSSAGVLLITHDPALMSR 220
                 356*******************9666677799******9988876 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   4.3e-05     0.045       3      19 ..      47      63 ..      45      69 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.3e-05
                    EE-STTSSHHHHHHHHH CS
  Cytidylate_kin  3 iDGPagsGKssvarala 19
                    + GP+gsGKs++ar la
      KIR64899.1 47 LRGPSGSGKSTLARVLA 63
                    77*************98 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00085       0.9      44      69 ..      39      64 ..      25      74 .. 0.84
   2 ?    2.2   0.0      0.12   1.3e+02      83     142 ..     144     204 ..     131     225 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00085
   IstB_IS21 44 iekkenivllGpsGvGKshlaialgv 69
                i+  e + l GpsG GKs la  l+ 
  KIR64899.1 39 IAPGETVGLRGPSGSGKSTLARVLAL 64
                66778999*************98875 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.12
   IstB_IS21  83 vedLveelkrarrdgklaral..kr.llkvdllilDdlgllpldqaeaellfeviekryerrs 142
                 ++dL+++   a +dg+l+ra   ++ + ++d l+ D+  +  ld   ++++  v+ + y+rrs
  KIR64899.1 144 TPDLLARRPHAVSDGQLQRAClaRAlVHRPDYLLCDEA-TAMLDASTQAHVAAVVTD-YQRRS 204
                 56788888888899999987422331456799999986.566888888888888876.55555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.5e-05     0.079      84     120 ..      26      63 ..      11      75 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.5e-05
                  TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  84 aktkegleelkellkd.ktsvlvGqSGvGKStLinall 120
                    +++ l+++  +++  +t+ l G+SG GKStL  +l+
   KIR64899.1  26 YGRQRVLDRVDLHIAPgETVGLRGPSGSGKSTLARVLA 63 
                  555667777777787769999************99885 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011      0.12      12      48 ..      32      68 ..      23      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
  Mg_chelatase 12 kraleiaaaGgHnlllvGppGsGKtmlakrlpsllpp 48
                     +++ +a g  + l Gp+GsGK+ la+ l+ l +p
    KIR64899.1 32 LDRVDLHIAPGETVGLRGPSGSGKSTLARVLALLHAP 68
                  5556677777888999************999887666 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0002      0.21       3      41 ..      43      80 ..      41      93 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
                EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH CS
  APS_kinase  3 vvvwltGlsgsGKstianalekkLvekgisvylLdGdnv 41
                 +v l G sgsGKst+a+ l+  L++     +++dG  v
  KIR64899.1 43 ETVGLRGPSGSGKSTLARVLA-LLHAPDSGHVTIDGRPV 80
                678899***********9997.77777777777888654 PP

>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0021       2.2       2      22 ..      44      64 ..      43      75 .. 0.89
   2 ?    1.5   0.0       0.2   2.1e+02      59      76 ..     156     173 ..     143     224 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0021
                EEEEEESTTSSHHHHHHHHHH CS
        CoaE  2 ivgltGgiasGKstvanlfad 22
                 vgl G  +sGKst+a+++a 
  KIR64899.1 44 TVGLRGPSGSGKSTLARVLAL 64
                59***************9975 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.2
                 TTSSE-HHHHHHHHHTSH CS
        CoaE  59 edGeLdReaLrkkvFadp 76 
                 +dG+L+R+ L++ + + p
  KIR64899.1 156 SDGQLQRACLARALVHRP 173
                 689*****9999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1698.43
//
Query:       KIR64900.1  [L=530]
Description: multidrug MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-50  171.6  55.3    4.4e-49  167.3  52.4    2.7  2  MFS_1      Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.43    8.8  11.6       0.62    8.3   2.0    3.0  3  OATP       Organic Anion Transporter Polypeptide (OATP) famil
       0.69   10.2   0.0       0.69   10.2   0.0    2.5  3  Adeno_E3B  Adenovirus E3B protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.3  52.4   7.4e-53   4.4e-49       2     352 ..      31     422 ..      28     423 .. 0.85
   2 !    3.6   0.0    0.0044        26     149     180 ..     485     514 ..     466     527 .. 0.73

  Alignments for each domain:
  == domain 1  score: 167.3 bits;  conditional E-value: 7.4e-53
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 ++a++ ++++ s l++a p  +a ++ +s s++ +++ +y+l  a++ lplG+l+dr+Gr+++ll+gl+lf+++++++ + +++  +++++r+l+G+ga
  KIR64900.1  31 CIALMAVIASVSGLNVAQP-QIAVAFDASQSTVLWMINIYTLSLAALLLPLGALGDRVGRKPILLAGLALFGVASAAAGL-ATSSeMMIAARLLAGVGA 127
                 6788888888888999999.8999999***********************************************555556.56666************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 ++++p+ +a+i+  fp+ er++aig++++ ++ G ilg+ l+++l+++++Wr++f++  ++ + a v   +l  +++++++ + + + +          
  KIR64900.1 128 AMIMPVTLAVITSTFPDGERSKAIGVWTGVAGGGGILGMYLSAVLVDWANWRWLFLLPVVLVAAATVA--ALRAVPNSRERSQHGFD-Lvgsltsviav 223
                 *****************************************************************994..44444444444444444.45999999999 PP

       MFS_1 189 .....................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglll 250
                                                      + +  apl++  ++++ ++ l +  +all  f + +g+++ l+ y+q vlg+sgl ++++l+
  KIR64900.1 224 valiyvlhegpvhgwtapvtlasllvgvvaalgfvawELRRVAPLLD-VRLFRDRR-LASGSLALLALFGVQAGIFVVLFPYFQAVLGWSGLRSTLALM 320
                 99999999999999999999889999888888887777777777777.55555555.43344444444446667777777777*******977777666 PP

       MFS_1 251 allalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll.vlvliGfglgfvfpsllalasdlappeeagtasglfntagslg 348
                 +++a++++++  la r++ r g+r ++  ++ll+ ++++++a l   +   l++l +++ +G+g+g+++++++ ++++ +p+e++g as+l+ +++ +g
  KIR64900.1 321 PMAAMMMLAS-GLAPRVAARAGARATMAAGILLGGTGLALMAALVSVDGGYLTILpGMLAMGLGMGLTQTPSTEAITSALPRERQGVASALNDVTREFG 418
                 6666666555.6*****************99999999999999999977777777577779************************************** PP

       MFS_1 349 galg 352
                 +alg
  KIR64900.1 419 TALG 422
                 **98 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0044
       MFS_1 149 gWravfyilaivsllafvlfllllpeepperk 180
                 gWr ++++  +v+ ++fv   +l + ++++ +
  KIR64900.1 485 GWRQAMWAGVAVMTILFVY--VLARGPRRTMP 514
                 7***************884..55544444333 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.4   0.00056       3.4       3      81 ..      27     105 ..      25     111 .. 0.86
   2 ?    8.3   2.0    0.0001      0.62     133     192 ..     114     173 ..     104     179 .. 0.91
   3 ?   -0.3   0.1     0.042   2.5e+02     135     200 ..     373     439 ..     359     520 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00056
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP   3 lvllsllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgsl 81 
                 l++++++ ++ +++ + ++++  +i   F+ ++st+ ++  ++ ++ ++l+l ++ +g+r+ r  ++ +g+ l++++s 
  KIR64900.1  27 LIAVCIALMAVIASVSGLNVAQPQIAVAFDASQSTVLWMINIYTLSLAALLLPLGALGDRVGRKPILLAGLALFGVASA 105
                 67788888888888888999****************************************7766666678888888765 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0001
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 133 llfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslll 192
                  ++++a ll+G+Ga++i+++ ++ i       + +  +g+++ ++  G +lG  l+++l+
  KIR64900.1 114 EMMIAARLLAGVGAAMIMPVTLAVITSTFPDGERSKAIGVWTGVAGGGGILGMYLSAVLV 173
                 4899**************************************************999876 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.042
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
        OATP 135 fflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGf.llGslllklyvdids 200
                 ++ + l +G+G  + +t  +  i     +++  +  ++  ++r +G alG  llG++l+  y d  +
  KIR64900.1 373 ILPGMLAMGLGMGLTQTPSTEAITSALPRERQGVASALNDVTREFGTALGVaLLGAVLTAGYRDAIT 439
                 6667888888888888888888888899999999999999999999999973468888888888744 PP

>> Adeno_E3B  Adenovirus E3B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.6       1.6   9.8e+03      23      36 ..      27      40 ..      25      47 .. 0.60
   2 ?   -3.7   0.0       2.6   1.5e+04      46      59 ..     193     206 ..     189     208 .. 0.82
   3 ?   10.2   0.0   0.00012      0.69      19      62 ..     237     280 ..     227     284 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.6
   Adeno_E3B 23 lilicslvtvviaf 36
                li +c  +  via 
  KIR64900.1 27 LIAVCIALMAVIAS 40
                55556555555554 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.6
   Adeno_E3B  46 riaylrhhpqyrdr 59 
                  +a lr  p+ r+r
  KIR64900.1 193 TVAALRAVPNSRER 206
                 57899999999998 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00012
   Adeno_E3B  19 gfvtlilicslvtvviafiqfidwvcvriaylrhhpqyrdrtia 62 
                 g+ + + + sl+  v+a + f+ w   r+a l     +rdr +a
  KIR64900.1 237 GWTAPVTLASLLVGVVAALGFVAWELRRVAPLLDVRLFRDRRLA 280
                 6667778899999999*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       989  (0.055162); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.24s 00:00:00.96 Elapsed: 00:00:00.40
# Mc/sec: 3974.44
//
Query:       KIR64901.1  [L=215]
Description: SAM-dependent methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-14   53.7   0.0    6.4e-14   52.4   0.0    1.6  2  Methyltransf_25  Methyltransferase domain
    1.3e-10   41.7   0.0    3.6e-10   40.3   0.0    1.7  2  Methyltransf_11  Methyltransferase domain
    4.4e-09   36.3   0.0    5.9e-09   35.9   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    2.8e-08   33.8   0.0      4e-08   33.3   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      3e-08   33.6   0.2    4.4e-08   33.0   0.2    1.3  1  TPMT             Thiopurine S-methyltransferase (TPMT)
      3e-08   34.3   0.0    6.1e-08   33.3   0.0    1.5  2  Methyltransf_12  Methyltransferase domain
    3.6e-06   26.7   0.0    4.7e-06   26.4   0.0    1.2  1  NodS             Nodulation protein S (NodS)
      9e-06   25.3   0.0    3.1e-05   23.6   0.0    1.8  2  MTS              Methyltransferase small domain
    2.6e-05   23.7   0.0    4.4e-05   23.0   0.0    1.4  1  TehB             Tellurite resistance protein TehB
  ------ inclusion threshold ------
      0.015   14.9   0.0       0.02   14.4   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
       0.12   12.9   0.0       0.98    9.9   0.0    2.2  1  DUF4350          Domain of unknown function (DUF4350)
       0.89    9.8   4.7       0.29   11.4   0.7    2.1  3  Chorion_S16      Chorion protein S16


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   4.3e-17   6.4e-14       2      97 .]      47     138 ..      46     138 .. 0.91
   2 ?   -2.0   0.0       4.2   6.3e+03      12      31 ..     164     175 ..     151     192 .. 0.57

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 4.3e-17
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      Ld+GcG G  +++la r+   +vt+ Dis+++l++a+ ra+++g+   +++v++d++ ++ + ++fDlv+  +a  h   ++  +++++i++++
       KIR64901.1  47 LDAGCGAGAEAIWLASRG--WQVTAADISADALAHAAVRAAASGPtgPIRWVEADLTGWE-PGRRFDLVTTHYA--HPAMPQ-LAFYQRICDWV 134
                      9****************5..***************************************8.677*******755..544444.67********* PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       KIR64901.1 135 APGG 138
                      ***9 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.2
                      HHHHHCTSTSSEEEEEESSH CS
  Methyltransf_25  12 tlalakrlgkakvtgvDise 31 
                      +        +a+vt +Di+ 
       KIR64901.1 164 A--------EATVTLTDITT 175
                      3........34455555543 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   2.4e-13   3.6e-10       1      96 []      47     142 ..      47     142 .. 0.89
   2 ?   -1.7   0.0       3.3   4.9e+03       3      27 ..     156     180 ..     154     195 .. 0.60

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 2.4e-13
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      Ld+GcG+G+ a +la+rg +v++ D+s+ +l+ a  +a  +g+   +++v+ad++    +   fDlv+ + +   ++ + ++ + i  ++ pgG
       KIR64901.1  47 LDAGCGAGAEAIWLASRGWQVTAADISADALAHAAVRAAASGPtgPIRWVEADLTGWE-PGRRFDLVTTHYAHPAMP-QLAFYQRICDWVAPGG 138
                      8******************************9997777777777899********753.4569*****999888886.8899************ PP

                      EEEE CS
  Methyltransf_11  93 llvi 96 
                      +l+i
       KIR64901.1 139 TLLI 142
                      9976 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.3
                      ET-TTSHHHHHHHHTTSEEEEEES- CS
  Methyltransf_11   3 vGcGtGrlaealakrgarvvgvDls 27 
                       G G G  aea       ++g+D +
       KIR64901.1 156 HGHGHGHPAEATVTLTDITTGLDEA 180
                      5777777777766555556666644 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0     4e-12   5.9e-09       7     110 ..      46     143 ..      43     183 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 4e-12
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeie 98 
                       lD+GCG+G+ ++ la++   + +v+  Dis++a+ +A  +a+  g +  ++  ++d +   +     ++fDl++++ +  a++ + +++++i+
       KIR64901.1  46 ALDAGCGAGAEAIWLASR---GWQVTAADISADALAHAAVRAAASGPTgPIRWVEADLTGwEP----GRRFDLVTTHYAHPAMPQL-AFYQRIC 131
                      69**************77...678************************99**********555....39*******9888777765.79***** PP

  Methyltransf_31  99 rvlkpggillie 110
                      + + pgg lli 
       KIR64901.1 132 DWVAPGGTLLIV 143
                      ********9986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   2.7e-11     4e-08      22     123 ..      42     148 ..      29     187 .. 0.73

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 2.7e-11
  Methyltransf_23  22 aggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae..........kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqi 105
                      a+g  Ld GcG G  +  l+ +g++vt+ D+s  a + a+           ++  + d +     +ep ++fdl++  +    +p   +  ++i
       KIR64901.1  42 APGTALDAGCGAGAEAIWLASRGWQVTAADISADALAHAAvraaasgptgPIRWVEADLT----GWEPGRRFDLVTTHYAHPAMPQ-LAFYQRI 130
                      57899***************************9998888666666666543444444444....777999******9999999998.6788*** PP

  Methyltransf_23 106 atllkpgGylllseplas 123
                       ++++pgG ll+  +l  
       KIR64901.1 131 CDWVAPGGTLLIVGHLHT 148
                      ***********9988643 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.2     3e-11   4.4e-08       2      78 ..       6      83 ..       5     104 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 3e-11
                HHHHHHHHHHTT--TT--SS--HHHHHHHHT..T-S--EEEEEET-TT-HHHHHH-BTTEEEEEE-S-HHHHHHHHHH CS
        TPMT  2 eedfWekrweeeqipfhqeevnpllkkflda.lkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvekffee 78
                +++ W++ w++ + +   + + +    +l + ++  a + +l  +CG + +++wlA++g++v + ++s  A+++++  
  KIR64901.1  6 DKAYWQQHWQQTHAGRPGSMAGNPPNPYLAReTAGLAPGTALDAGCGAGAEAIWLASRGWQVTAADISADALAHAAVR 83
                5678*********99988877777777777668999999*********************************987644 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   4.1e-11   6.1e-08       1      99 []      47     140 ..      47     140 .. 0.90
   2 ?   -3.0   0.0       8.8   1.3e+04      21      32 ..     166     177 ..     160     190 .. 0.68

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 4.1e-11
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L+ GcG G+ +  l+ +  ++++t+ Dis++a+++a+ + a+ ++  +  +++ + dl   ++g  fDlv+ + +  +++++ ++ ++i ++++
       KIR64901.1  47 LDAGCGAGAEAIWLASR--GWQVTAADISADALAHAAVRAAASGP--TGPIRWVEADLTGWEPGRRFDLVTTHYAHPAMPQL-AFYQRICDWVA 135
                      89***************..**************999999999887..56********9999999********9998887444.77899999999 PP

  Methyltransf_12  95 pgGrl 99 
                      pgG l
       KIR64901.1 136 PGGTL 140
                      99976 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.8
  Methyltransf_12  21 ieytgvDispsa 32 
                      +++t +Di +  
       KIR64901.1 166 ATVTLTDITTGL 177
                      567777777654 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   3.1e-09   4.7e-06      45     168 ..      44     171 ..      34     190 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 3.1e-09
        NodS  45 adalevGcaaGalterlapyckrltvvdvveeaiararervkes...shiswivsdvqqfstdekfdlivvaevlyyiedvaelraavrnlvsllapdg 140
                 + al+ Gc aGa +  la    ++t  d+  +a+a+a  r   s     i w+++d++  +  ++fdl+      +y +  +   a  + + + +ap+g
  KIR64901.1  44 GTALDAGCGAGAEAIWLASRGWQVTAADISADALAHAAVRAAASgptGPIRWVEADLTGWEPGRRFDLVTT----HYAHPAMPQLAFYQRICDWVAPGG 138
                 679***********************************99987522257******************9864....677777777788888888888888 PP

        NodS 141 ql.vfGs..ardavcrrwGhvaG..aetvlall 168
                 +l + G   + + + +  Gh  G  ae++++l 
  KIR64901.1 139 TLlIVGHlhTSQGNGHDHGHGHGhpAEATVTLT 171
                 762455411223344444443333377777765 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   2.1e-08   3.1e-05      33     103 ..      44     114 ..      33     149 .. 0.83
   2 ?   -0.2   0.0      0.42   6.3e+02      19      44 ..     138     162 ..     126     189 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.1e-08
                 SEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS-EEEEEE CS
         MTS  33 gkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeveekkfdlivs 103
                 g++lD GcGaG+ +++la++  +  vt+ d++a Al+ a   ++a++    ++ v+ d++   + ++fdl+ +
  KIR64901.1  44 GTALDAGCGAGAEAIWLASRGWQ--VTAADISADALAHAAVRAAASGPTgpIRWVEADLTGWEPGRRFDLVTT 114
                 679****************9888..9**************999999999778888888887777888998865 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.42
                 HHHHHHHHCHCCTCSEEEEET-TTSH CS
         MTS  19 GsklLletlpkelsgkvlDlGcGaGv 44 
                 G+ l++ +l++  +g+  D G G G 
  KIR64901.1 138 GTLLIVGHLHT-SQGNGHDHGHGHGH 162
                 66677777777.66677777777775 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.9e-08   4.4e-05      29      67 ..      41      79 ..      35     117 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.9e-08
                S-S-EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHH CS
        TehB 29 vkpgkvldlgcgqgrnslylsllgydvtawdknensiaf 67
                + pg +ld gcg g ++++l+  g++vta d  ++++a+
  KIR64901.1 41 LAPGTALDAGCGAGAEAIWLASRGWQVTAADISADALAH 79
                68*****************************99988775 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.4e-05      0.02       4      59 ..      46     101 ..      44     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-05
  Methyltransf_15   4 ilDlfsGaGGnviqfalvfekviaieinleklacaqhNaevYgvsdkitlvlgdvf 59 
                       lD+ +GaG ++i +a  + +v a +i+ + la a+  a + g    i +v +d++
       KIR64901.1  46 ALDAGCGAGAEAIWLASRGWQVTAADISADALAHAAVRAAASGPTGPIRWVEADLT 101
                      69****************99**************9999998888888888888865 PP

>> DUF4350  Domain of unknown function (DUF4350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00066      0.98      13      68 ..      59     143 ..      49     144 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00066
     DUF4350  13 lLeaqGvevrrvrkpfdaleg..........................edgtllvvapdlrlte...eelaallewvarGntlvla 68 
                 +L ++G +v++++ ++dal+                           +++  lv++ + +      +  +++ +wva+G+tl+++
  KIR64901.1  59 WLASRGWQVTAADISADALAHaavraaasgptgpirwveadltgwepGRRFDLVTTHYAHPAMpqlAFYQRICDWVAPGGTLLIV 143
                 7777788888888888877544677777777777777766666665323333555555332223456667999**********98 PP

>> Chorion_S16  Chorion protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.3       1.3     2e+03      16      40 ..      42      66 ..      34      69 .. 0.74
   2 ?   11.4   0.7   0.00019      0.29      11      52 ..      67     108 ..      60     126 .. 0.87
   3 ?   -2.6   0.0       4.3   6.4e+03      32      41 ..     175     184 ..     168     192 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.3
  Chorion_S16 16 aqaaaltnaagaaasaakldgadwy 40
                 a  +al   +ga a a  l +  w+
   KIR64901.1 42 APGTALDAGCGAGAEAIWLASRGWQ 66
                 5667888889999999888888885 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00019
  Chorion_S16  11 vetaeaqaaaltnaagaaasaakldgadwyalnrygweqgrp 52 
                  v +a+  a al+ aa  aa++       w + +  gwe gr 
   KIR64901.1  67 VTAADISADALAHAAVRAAASGPTGPIRWVEADLTGWEPGRR 108
                  5678999*********************************95 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4.3
  Chorion_S16  32 akldgadwya 41 
                  + ld adw  
   KIR64901.1 175 TGLDEADWEV 184
                  5689999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1703.36
//
Query:       KIR64902.1  [L=198]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-16   59.0   0.3    4.9e-16   58.5   0.3    1.2  1  HTH_3          Helix-turn-helix
    4.8e-15   55.7   1.3    7.5e-15   55.0   1.3    1.3  1  HTH_31         Helix-turn-helix domain
    4.3e-13   48.8   0.0    6.8e-13   48.1   0.0    1.3  1  Cupin_2        Cupin domain
    1.9e-10   41.0   0.1      3e-10   40.4   0.1    1.3  1  HTH_26         Cro/C1-type HTH DNA-binding domain
    7.5e-10   38.7   0.0    1.1e-09   38.1   0.0    1.3  1  HTH_19         Helix-turn-helix domain
      1e-05   25.3   1.5    1.7e-05   24.6   1.5    1.3  1  HTH_25         Helix-turn-helix domain
    0.00021   20.8   0.8    0.00099   18.6   0.4    2.0  2  HTH_24         Winged helix-turn-helix DNA-binding
    0.00072   19.3   0.6     0.0015   18.3   0.6    1.5  1  HTH_IclR       IclR helix-turn-helix domain
    0.00099   19.0   0.1     0.0016   18.3   0.1    1.4  1  HTH_37         Helix-turn-helix domain
     0.0011   18.7   0.1     0.0023   17.7   0.1    1.5  1  HTH_10         HTH DNA binding domain
     0.0056   16.6   0.1       0.01   15.7   0.1    1.4  1  MarR           MarR family
     0.0077   16.1   0.0      0.013   15.4   0.0    1.4  1  AraC_binding   AraC-like ligand binding domain
  ------ inclusion threshold ------
      0.011   15.6   1.1      0.023   14.7   0.7    1.7  2  HTH_11         HTH domain
      0.012   15.7   0.1      0.025   14.7   0.0    1.6  1  HTH_AraC       Bacterial regulatory helix-turn-helix proteins
      0.013   15.4   0.0      0.021   14.7   0.0    1.3  1  HTH_5          Bacterial regulatory protein, arsR family
      0.017   15.2   0.2      0.038   14.2   0.2    1.5  1  AbiEi_4        Transcriptional regulator, AbiEi antitoxin
      0.023   14.6   0.2      0.046   13.6   0.2    1.6  1  MarR_2         MarR family
      0.086   12.7   0.2       0.22   11.4   0.2    1.7  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
      0.091   12.2   0.2       0.18   11.2   0.0    1.6  1  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
       0.11   12.3   0.0       0.21   11.4   0.0    1.4  1  LacI           Bacterial regulatory proteins, lacI family
       0.12   12.6   0.1       0.19   11.9   0.1    1.5  1  DUF4232        Protein of unknown function (DUF4232)
       0.12   12.5   0.1       0.18   11.8   0.1    1.3  1  HTH_35         Winged helix-turn-helix DNA-binding
       0.16   11.8   0.3       0.67    9.7   0.1    2.0  2  HTH_DeoR       DeoR-like helix-turn-helix domain
       0.18   11.7   0.0         18    5.3   0.0    2.2  2  Phage_AlpA     Prophage CP4-57 regulatory protein (AlpA)
       0.19   12.1   0.0       0.36   11.2   0.0    1.3  1  Rrf2           Transcriptional regulator


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.3   6.8e-19   4.9e-16       1      55 []      16      70 ..      16      70 .. 0.99

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 6.8e-19
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsldel 55
                lk+lR+ +++++++LAe++G+s st+sr+E G r+P+le ++ la+a +v++del
  KIR64902.1 16 LKQLRQRRNITLTDLAEETGISASTLSRLEAGLRRPTLEQMLPLARAHNVTIDEL 70
                8****************************************************98 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   1.3     1e-17   7.5e-15       2      61 ..      12      70 ..      11      73 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 1e-17
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaer 61
                 G++L++lR+r++++++++Ae +g+s+stlsrlE G r rp++++   lara++++ +e+
  KIR64902.1 12 VGPRLKQLRQRRNITLTDLAEETGISASTLSRLEAGLR-RPTLEQMLPLARAHNVTIDEL 70
                69************************************.9***************98876 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   9.5e-16   6.8e-13      13      70 ..     122     178 ..     108     179 .. 0.89

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 9.5e-16
                 EECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEE CS
     Cupin_2  13 shrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllvv 70 
                   +H+g   ++yVl G+++l +++ + +l++G+++ f++ tpH+f+ t+ +p+++l++
  KIR64902.1 122 LRTHEGY-DWVYVLNGTLRLVLGDDDLTLQPGEAAEFDTRTPHWFGATSAGPVEFLSL 178
                 445****.***********************************************986 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.1   4.2e-13     3e-10       1      59 [.      15      72 ..      15      74 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 4.2e-13
      HTH_26  1 kLrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLle 59
                +L++l + r+it ++La+ tgisa+tlsrl  g  +r++l+ +  +++a ++t+++L++
  KIR64902.1 15 RLKQLRQRRNITLTDLAEETGISASTLSRLEAG-LRRPTLEQMLPLARAHNVTIDELVD 72
                79*******************************.69*********************86 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   1.6e-12   1.1e-09       2      61 ..      14      72 ..      13      75 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 1.6e-12
      HTH_19  2 erLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyllq 61
                 rLk++R  +++t+ +lae++gis s +s +E g +  p+ e +l +a+a ++++++l +
  KIR64902.1 14 PRLKQLRQRRNITLTDLAEETGISASTLSRLEAGLR-RPTLEQMLPLARAHNVTIDELVD 72
                59********************************99.9******************9986 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   1.5   2.4e-08   1.7e-05       1      33 [.      15      47 ..      15      49 .. 0.97

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.4e-08
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHCT CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEed 33
                rL++ R++r+++l ++a+et I++++l +lE++
  KIR64902.1 15 RLKQLRQRRNITLTDLAEETGISASTLSRLEAG 47
                79*****************************97 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.4   1.4e-06   0.00099       9      36 ..      16      43 ..      16      44 .. 0.93
   2 ?   -0.0   0.0      0.93   6.7e+02      12      24 ..      75      87 ..      75      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.4e-06
      HTH_24  9 LelLqknprisqreLAerlglSpstvnr 36
                L+ L++  +i+ ++LAe++g+S st++r
  KIR64902.1 16 LKQLRQRRNITLTDLAEETGISASTLSR 43
                778999999****************997 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.93
      HTH_24 12 LqknprisqreLA 24
                L  +pri+ r +A
  KIR64902.1 75 LTGDPRINLRPIA 87
                5679******999 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.6   2.1e-06    0.0015      13      38 ..      20      44 ..      16      50 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.1e-06
                CTTBSS-BHHHHHHHHTS-HHHHHHH CS
    HTH_IclR 13 aeapqeltlselArrtglpkStvhRl 38
                + +++  tl++lA++tg++ St +Rl
  KIR64902.1 20 R-QRRNITLTDLAEETGISASTLSRL 44
                4.45559******************9 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   2.3e-06    0.0016      23      72 ..      16      64 ..       8      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.3e-06
                HHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTT CS
      HTH_37 23 iaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalG 72
                +++l+++r+++ +++a+ +gi+ + +srl+   l+r +l+++l l+ a +
  KIR64902.1 16 LKQLRQRRNITLTDLAEETGISASTLSRLEA-GLRRPTLEQMLPLARAHN 64
                899***************************5.899999999999888766 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   3.2e-06    0.0023      22      41 ..      23      42 ..      20      52 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.2e-06
      HTH_10 22 RrvtlkeLAkelGIskstls 41
                R++tl +LA+e GIs+stls
  KIR64902.1 23 RNITLTDLAEETGISASTLS 42
                99****************97 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   1.4e-05      0.01       9      37 ..      16      44 ..      15      48 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.4e-05
                HHHHHHSTTEEHHHHHHHHTS-HHHHHHH CS
        MarR  9 LrilyeqgplsvseLakklgvskstvtrv 37
                L +l+++ ++++++La+  g+s st++r+
  KIR64902.1 16 LKQLRQRRNITLTDLAEETGISASTLSRL 44
                7789***********************96 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.9e-05     0.013      14      73 ..     117     177 ..     109     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.9e-05
                   -SEEE.ETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEE CS
  AraC_binding  14 hsfpp.hvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrw 73 
                    ++p+ ++h+ y ++yv+ Gt rl l++    l+pG+   +   +pH + + s  + e+ +
    KIR64902.1 117 NRVPElRTHEGYDWVYVLNGTLRLVLGDDDLTLQPGEAAEFDTRTPHWFGATSAGPVEFLS 177
                   44444499******************************99999999999998877777665 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.7   3.2e-05     0.023       6      34 ..      16      43 ..      15      44 .. 0.85
   2 ?   -2.6   0.0         8   5.7e+03      11      21 ..      59      70 ..      52      72 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.2e-05
      HTH_11  6 lelLleargpisgeeLAeeLnvSrrtvrr 34
                l++L+ +r +i+  +LAee+++S +t  r
  KIR64902.1 16 LKQLR-QRRNITLTDLAEETGISASTLSR 43
                78995.5556**************99865 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8
      HTH_11 11 eargp.isgeeL 21
                 ar + ++++eL
  KIR64902.1 59 LARAHnVTIDEL 70
                444455999888 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.4e-05     0.025       7      28 ..      23      44 ..      19      44 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.4e-05
                CT--HHHHHHHTTSSHHHHHHH CS
    HTH_AraC  7 tnltiediAdelgfSrsyFsrl 28
                +n+t++d+A+e g+S s++srl
  KIR64902.1 23 RNITLTDLAEETGISASTLSRL 44
                579*****************96 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.9e-05     0.021       8      34 ..      16      43 ..      16      43 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.9e-05
                HHHHTT.SSEEHHHHHHHHTS-HHHHHH CS
       HTH_5  8 LklLae.gelcvcelaeelglsqstvSh 34
                Lk+L++ ++ + ++laee+g+s st+S+
  KIR64902.1 16 LKQLRQrRNITLTDLAEETGISASTLSR 43
                7899998889****************97 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   5.3e-05     0.038       9      33 ..      20      45 ..      15      46 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.3e-05
     AbiEi_4  9 rqvGlfttrelea.aGispsalrrLv 33
                rq+  +t ++l++  Gis+s+l+rL 
  KIR64902.1 20 RQRRNITLTDLAEeTGISASTLSRLE 45
                45566******999**********95 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   6.5e-05     0.046      16      41 ..      21      44 ..       7      50 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.5e-05
                CTTTSEEEHHHHHHHHTSSHHHHHHH CS
      MarR_2 16 rrpgrdltvgelarrlglsksavsri 41
                 r  r++t ++la+++g+s s++sr+
  KIR64902.1 21 QR--RNITLTDLAEETGISASTLSRL 44
                23..369*****************97 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2    0.0003      0.22      11      35 ..      18      42 ..      16      43 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0003
  HTH_AsnC-type 11 aLqedaRisyaeLAervGlSestvl 35
                    L++   i+ ++LAe++G+S+st  
     KIR64902.1 18 QLRQRRNITLTDLAEETGISASTLS 42
                   577777899*************976 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00025      0.18      24      46 ..      19      43 ..      16      44 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00025
  HTH_Tnp_ISL3 24 lles..rsvkavArqlgvSwtTVwr 46
                  l+++  ++ ++ A+++g+S++T+ r
    KIR64902.1 19 LRQRrnITLTDLAEETGISASTLSR 43
                  55555799**************998 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00029      0.21       1      18 [.      26      43 ..      26      44 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00029
                -HHHHHHHCTS-HHHHHH CS
        LacI  1 tikDVArlAGVSkaTVSr 18
                t+ D+A++ G S++T Sr
  KIR64902.1 26 TLTDLAEETGISASTLSR 43
                89***************9 PP

>> DUF4232  Protein of unknown function (DUF4232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00027      0.19      48     103 ..     116     196 ..      74     198 .] 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00027
     DUF4232  48 gqqvgaaaeregpaavp..............vtLapGesAyaglrwtnaggdgdgecta...........aglrvtppdgt 103
                 ++ v++ +++eg + v               +tL+pGe+A ++ r+ +  g +++ +++           a +rvtp  gt
  KIR64902.1 116 DNRVPELRTHEGYDWVYvlngtlrlvlgdddLTLQPGEAAEFDTRTPHWFGATSAGPVEflslvgrqgerAHVRVTPKPGT 196
                 45555555555555444666666777777779*****************99999999998888888888888888877665 PP

>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00025      0.18      12      35 ..      21      44 ..      17      70 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00025
      HTH_35 12 rkrgttLaalsreaglssstlsna 35
                ++r++tL++l++e g+s stls+ 
  KIR64902.1 21 QRRNITLTDLAEETGISASTLSRL 44
                4789**************999864 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00093      0.67       6      30 ..      16      40 ..      16      43 .. 0.92
   2 ?   -1.6   0.0       3.3   2.3e+03       9      22 ..      59      72 ..      52      73 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00093
    HTH_DeoR  6 lellkqqgklsveelvellgvSeaT 30
                l+ l+q++ +++++l+e+ g+S  T
  KIR64902.1 16 LKQLRQRRNITLTDLAEETGISAST 40
                5789******************999 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.3
    HTH_DeoR  9 lkqqgklsveelve 22
                l++   ++++elv+
  KIR64902.1 59 LARAHNVTIDELVD 72
                45556788888875 PP

>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.045        32       1      23 [.      22      44 ..      22      47 .. 0.89
   2 ?    5.3   0.0     0.025        18       4      19 ..      48      63 ..      45      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.045
  Phage_AlpA  1 rrilrlreVeqktglsrstiYrl 23
                rr++ l+++++ tg+s st+ rl
  KIR64902.1 22 RRNITLTDLAEETGISASTLSRL 44
                69999**************9776 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.025
  Phage_AlpA  4 lrlreVeqktglsrst 19
                lr++ +eq+++l+r++
  KIR64902.1 48 LRRPTLEQMLPLARAH 63
                8*************97 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0005      0.36      17      51 ..      16      50 ..      14      53 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0005
                HHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHH CS
        Rrf2 17 LakeeeeepvsseeiaerqnispsylekilakLrk 51
                L++ ++++ ++++++ae+++is+s l+++ a Lr+
  KIR64902.1 16 LKQLRQRRNITLTDLAEETGISASTLSRLEAGLRR 50
                667778888********************999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1293.91
//
Query:       KIR64903.1  [L=288]
Description: hypothetical protein TK50_04835 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2070.80
//
Query:       KIR64904.1  [L=267]
Description: hypothetical protein TK50_04855 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-10   41.3   0.0    3.1e-10   40.7   0.0    1.3  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   1.7e-14   3.1e-10       1     209 [.      19     236 ..      19     238 .. 0.71

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.7e-14
                 HHHHSEEEETTSS-HHHHHHHHHHHHHHHHHCHTTCCSEEEEECEEESTTCCCEECCCHHCHHHHTTHHHHHHHHHHHHTSCEEEE.......EEEEEE CS
        PhyH   1 feedGylviegflsaeevealraeiealldralesgdkidfffeekaaadedglleksinkvghflhprkvadlvrailgqdvyva.......avlqsm 92 
                 f+  G l i+gfls+++ve  rae+++l     +s     ++ ++++++ ed    +s ++ + ++++  v +lv+ +++q+           ++ qs 
  KIR64904.1  19 FDTMGLLRIPGFLSPDAVEVCRAEVRRL-----SS---TAALGDGEKEKVEDLVG-NSAHFAELAASE-AVRALVEPLVNQPY-RLiesyalrRTRQSV 106
                 6788***********************9.....33...33444444444433333.667888999998.88888888888884.335777665445555 PP

                 EEE......EEE-TTTCB-EEEEE-SGGGSTEES....GCCEEEEEEESS-B.-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTS............C CS
        PhyH  93 yqd......ifkqpkiGgevqpwHqDstflptdp....eesvvgvwialeda.teenGclrfiPGSHkweegplrrrlpeddteae............d 168
                 ++         +++  G+      ++  + +t +    +  +v v i+l d+ + + G+ +++ GSHk  ++   +  + d++               +
  KIR64904.1 107 FYLhngsgeVLHYA--GDR--VARRNMSYMHTFHdgklYCMFVKVLIYLSDVlSDDDGPFCYLQGSHKA-NFA--WFPDGDSGS-PnawvsetgnpraA 197
                 53344433333333..443..47777777777776666666777999999964899*************.453..333333333.2578****998777 PP

                 CCTTTGHGSCEEEE.BTTTEEEEEETTSEEEE-TB.SSSXE CS
        PhyH 169 deakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksR 209
                  ++++ ++ e+v +  +aGda++++ +llHgs +  s + R
  KIR64904.1 198 LTRENFPSLEFVRA--RAGDALVINEALLHGSLQKASGGER 236
                 77777777777777..99*****************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2057.43
//
Query:       KIR64905.1  [L=421]
Description: hypothetical protein TK50_04860 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-36  123.6   0.0    8.5e-36  123.1   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    1.4e-26   93.5   0.0    2.9e-26   92.5   0.0    1.6  1  Glyco_trans_1_4  Glycosyl transferases group 1
      3e-22   79.4   0.2    6.4e-22   78.3   0.2    1.5  1  Glyco_transf_4   Glycosyltransferase Family 4
    8.6e-21   75.0   4.7    8.6e-21   75.0   4.7    2.6  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    4.1e-12   46.3   0.0    2.4e-05   24.1   0.0    2.2  2  Glyco_transf_5   Starch synthase catalytic domain
    1.9e-07   31.4   0.0    3.6e-07   30.5   0.0    1.5  1  Glyco_trans_1_2  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.067   13.8   0.1       0.17   12.5   0.1    1.7  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
       0.32   10.4   3.0       0.47    9.8   0.4    2.3  2  PALP             Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.1   0.0   3.8e-39   8.5e-36      15     169 ..     211     362 ..     205     365 .. 0.96

  Alignments for each domain:
  == domain 1  score: 123.1 bits;  conditional E-value: 3.8e-39
                      -EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBSS-HH CS
  Glycos_transf_1  15 kkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEgfGiv 108
                      +  +l vgrl+++Kg dl i a+ ll+   + +v+lv+aG+g+ + +l+ la +l+++d+v+flg+v r++le+l+  a i+++ps+ ++f+i+
       KIR64905.1 211 QVELLQVGRLVHQKGCDLSIAALSLLR---DLPVRLVVAGDGPARPQLEGLARSLGVRDRVTFLGYVARSRLETLYADAQIALVPSRFDPFPIA 301
                      66789*********************7...68************************************************************** PP

                      HHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHH CS
  Glycos_transf_1 109 llEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgena 169
                      + EA a+g+ vi   +gg++e++ + etG+l +p+++ ala  ir++l d+++++ lge+a
       KIR64905.1 302 VCEAQAVGKVVIGARIGGIPEQIDHLETGILTPPEDHIALAGWIRWVLADPDRARTLGERA 362
                      *****************************************************99999987 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.0   1.3e-29   2.9e-26       4     134 .]     214     351 ..     211     351 .. 0.91

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 1.3e-29
                      EEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---...HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--..---SHHHHHH CS
  Glyco_trans_1_4   4 ilfvGrleenvkgvdllleavpllrkkdvrlvivGdgp.rpeeleelaa..gleerveftGfv..edlaellaaadvfvaPs..egfglkllEa 90 
                      +l vGrl+ ++kg dl + a+ llr+ +vrlv++Gdgp rp +le la+  g+++rv+f+G+v  + l+ l+a+a+++++Ps    f++++ Ea
       KIR64905.1 214 LLQVGRLV-HQKGCDLSIAALSLLRDLPVRLVVAGDGPaRP-QLEGLARslGVRDRVTFLGYVarSRLETLYADAQIALVPSrfDPFPIAVCEA 305
                      899****6.55**************668**********776.999888779************8667***************766********* PP

                      HHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  91 maaglpvVatdvggiaevv..gengllvppgdpealaeailrLled 134
                       a+g+ v+  ++ggi+e +   e+g+l pp+d  ala  i  +l+d
       KIR64905.1 306 QAVGKVVIGARIGGIPEQIdhLETGILTPPEDHIALAGWIRWVLAD 351
                      *****************998659**************999888876 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.2   2.8e-25   6.4e-22       2     166 ..      16     190 ..      15     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 2.8e-25
  Glyco_transf_4   2 GGverhvleLaraLarrGheVtvvtpgddgpleeev......elvvrvprvplpllkrllrslaflrrlrrllkre....kpDvvHahspaalga 86 
                      G+++h+  La aL+r+G+ Vtv+t g+++++++         l+ ++ + p   ++ l    +++  +++ +  +    ++D+vH+h++ a++a
      KIR64905.1  16 SGIGVHAAALAGALRRLGVSVTVITTGSKPESGRDGddhycgTLGAEILSLPGEASATLSMLHRNVGMAAA-A--GklpaGFDLVHCHDSRAVLA 107
                     59*************************99999999899755533333333333333333333333322222.2..13367*********999866 PP

  Glyco_transf_4  87 allalrrrlgiplVltvHglye....krllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGv 166
                     a +a +  +++plV t H        +       +    ++++ler+ l r+  viavS+++a+ +r+  g + e+++VipnG 
      KIR64905.1 108 A-RAVADLWDLPLVMTKHYDRSaggtHLDEDTSDRVMLDYEQRLERWGLERSTVVIAVSQSLARGVRTSVGRAVENLVVIPNGT 190
                     6.455557**********999998774445556678899999*****************************999*********6 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   4.7   3.8e-24   8.6e-21       1     160 []      16     189 ..      16     189 .. 0.77
   2 ?   -3.1   5.5       4.1   9.3e+03      64     105 ..     233     272 ..     194     401 .. 0.61

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 3.8e-24
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapg......apeleedgvrvhrlpvprrpspladlaalralrrllrqrrerpdvvhahsptaglaa 88 
                      +Gig+++a+la aL+++G++Vtv+t++  p+      ++     g+++ +lp  ++  +l +l +  +++++ +    ++d+vh+h++ a laa
       KIR64905.1  16 SGIGVHAAALAGALRRLGVSVTVITTGSKPEsgrdgdDHYCGTLGAEILSLPGEASA-TLSMLHRNVGMAAAAGKLPAGFDLVHCHDSRAVLAA 108
                      6************************66555522222122244568999888766554.4445444455555556679***************** PP

  Glyco_trans_4_4  89 rlarrrrgiplvvtlh......glllrrgsgavrrly....ralerrllrradavlvvseaeaeelra.lgvpadrvvvvpng 160
                      r+ +  +++plv t h      g+ l+     + r++    ++ler+ l r  +v++vs+++a+ +r   g++ +++vv+png
       KIR64905.1 109 RAVADLWDLPLVMTKHydrsagGTHLD--EDTSDRVMldyeQRLERWGLERSTVVIAVSQSLARGVRTsVGRAVENLVVIPNG 189
                      *99999**********77765422222..223333333668***************************999***********8 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.1
  Glyco_trans_4_4  64 rrllrqrrerpdvvhahs.ptaglaarlarrrrgiplvvtlhg 105
                       +ll  r+ ++ +v+a + p  +++  lar   g++  vt+ g
       KIR64905.1 233 LSLL--RDLPVRLVVAGDgPARPQLEGLAR-SLGVRDRVTFLG 272
                      4444..566666666655455566666666.555555555532 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.8e-07    0.0004       1      43 [.       2      43 ..       2      59 .. 0.91
   2 !   24.1   0.0   1.1e-08   2.4e-05     121     238 ..      82     180 ..      69     185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.8e-07
  Glyco_transf_5  1 kilfvasEvaplaktGGLadvvgaLpkaLaklghdvrvilPry 43
                    ++l+++s ++p     G++ +++aL+ aL++lg+ v+vi+ + 
      KIR64905.1  2 RVLMISSDYPP-RPRSGIGVHAAALAGALRRLGVSVTVITTGS 43
                    79*********.99999**********************9876 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 1.1e-08
  Glyco_transf_5 121 aalelleklgwkpdvihahDWhtalvpallkelykerglfkkiktvftiHNlayqgrfpkdelaalglpaedfekldglefygkvnflkagivya 215
                     ++++++ kl+ ++d++h+hD  ++l++  +++l        + ++v+t H   y+++ +  +l     + ed+++  +l++++   + ++g+  +
      KIR64905.1  82 GMAAAAGKLPAGFDLVHCHDSRAVLAARAVADLW-------DLPLVMTKH---YDRSAGGTHL-----D-EDTSDRVMLDYEQ--RLERWGLERS 158
                     567777788999**************99999996.......4********...8888886555.....3.3333334444444..7788****** PP

  Glyco_transf_5 216 davttVSptyakEiltpefgggl 238
                       v++VS++ a+ ++t+  g  +
      KIR64905.1 159 TVVIAVSQSLARGVRTSV-GRAV 180
                     **************9976.5555 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.6e-10   3.6e-07       1      90 [.     288     379 ..     288     381 .. 0.96

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.6e-10
  Glyco_trans_1_2   1 ivLnpsrsespnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydhraeql 90 
                      i+L psr + +   + Ea a G +++  ++ g++e ++  +++il    d+  la  ir +la+p+++r ++e+a  +++a +++d+ ae  
       KIR64905.1 288 IALVPSRFDPFPIAVCEAQAVGKVVIGARIGGIPEQIDHLETGILTPpeDHIALAGWIRWVLADPDRARTLGERAGSHARAAYSWDRIAEAT 379
                      68999****************************************9999***************************************9976 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   7.4e-05      0.17       6      35 ..      17      46 ..      16      58 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.4e-05
                CSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  6 GgGyiglElAgalaelgkkVtvversdkll 35
                G G+ +  lAgal++lg +Vtv+  ++k+ 
  KIR64905.1 17 GIGVHAAALAGALRRLGVSVTVITTGSKPE 46
                67899999****************999987 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.4   0.00021      0.47      64     118 ..      19      77 ..      15     111 .. 0.80
   2 ?    0.5   0.1      0.14   3.2e+02     185     251 ..     345     411 ..     228     414 .. 0.44

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00021
                 SHHHHHHHHHHHHHT-EEEEEEETTS-H....HHHHHHHHTT-EEEEECCHHHHHHHHH CS
        PALP  64 GNhgralAaaaallGlkvtivvpadasp....ekvallrllGaevvevggdydeavaaa 118
                 G h++alA a ++lG+ vt+    ++++    +    +  lGae+   +g+  +++++ 
  KIR64905.1  19 GVHAAALAGALRRLGVSVTVITTGSKPEsgrdGDDHYCGTLGAEILSLPGEASATLSML 77 
                 669******************88888854445999999999****99999877777663 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.14
                 -EEEEEEECTTCGGTTCCS..S.SS..B.SSS.CCSTCS.CGTTCCHHHHSEEEEEEEEEEHHHHHHH CS
        PALP 185 vrvigvepegsdalarslragrrvtvpvsdtiadglavg.spselafelldrlvdeivtvsdeealea 251
                 +r + ++p+++ +l++ +    r  ++  d ia++   + ++++++f+++ +   ++  ++  +a++a
  KIR64905.1 345 IRWVLADPDRARTLGERAGSHARAAYSW-DRIAEATLRQyQVARETFAAAGQPRRPVADLDAVAAVDA 411
                 4444455555555555442222222222.444444333346666666666666666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2843.86
//
Query:       KIR64906.1  [L=122]
Description: hypothetical protein TK50_04865 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-07   31.7   0.0    2.1e-07   31.4   0.0    1.1  1  YjbR      YjbR


Domain annotation for each model (and alignments):
>> YjbR  YjbR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.1e-11   2.1e-07       1      85 [.      12     108 ..      12     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.1e-11
                 TTSTTEEEEECTTS-EEEECCCEEEEEEECCCCG..........EEEES.-HHHHHHHHHSSTT.EEE-TSTTTEEEE..ETTSS-HHHHHHHHHHHHH CS
        YjbR   1 lslpgatedfpfgpelvfkvggKmFallgleees..........lnlkc.dpeeaeaLreqypa.iapgyhkkhWitv..lldgvpddeleelideSYr 85 
                 l+lp+++e  + g +  f+v +K F++ ++e+            ++l + d+ e++aL+  +p+ ++ +    +   v   l++v+ + l+eli++++r
  KIR64906.1  12 LALPHVVEIDSDGFD--FRVENKGFVWSYPERLPgrprvirtdiAVLYVgDEAEKQALLLGEPDlFFTATGYDGFPLVmlRLTEVSVERLAELITDAWR 108
                 789999998877655..************9887577889999*9899999**************88888854466666336666**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 885.33
//
Query:       KIR64907.1  [L=224]
Description: AcrR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-20   73.2   0.1    2.8e-20   72.6   0.1    1.3  1  TetR_C_1  Tetracyclin repressor-like, C-terminal domain
    2.2e-08   33.7   0.3    9.4e-08   31.7   0.1    2.2  2  TetR_N    Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.037   14.0   0.1          1    9.4   0.0    2.3  2  HTH_19    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> TetR_C_1  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.1   4.8e-24   2.8e-20       2     142 ..      77     218 ..      76     221 .. 0.89

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 4.8e-24
                 -STTS-HHHHHHHHHHHHHHHHHTSTTHHHHHHT-SS--HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHSTT--..STT-HHH CS
    TetR_C_1   2 PdegedWrerlrelarslrrallrhrdlarlfagtprlspnelrgmErlLrllrdaGlsdedavyalslisnFvvGavleeqsgledaee..raeqeav 98 
                 P e++dW++++r+ a s r++l rh++ + l+ ++  ++p++lr  E + + lr+aG+s   a++a  l++ +v+G++l e s   d+++  ++  ++v
  KIR64907.1  77 PPEETDWQSAMRRRAVSARQVLARHPWAIGLMESRTSPGPAHLRHREAVTACLRRAGFSVLMATHANWLLDVYVYGFALQEASLPFDTANefADMAKDV 175
                 77888******************************************************************************8766554103444556 PP

                 HHHH--TTT-HHHHHHHH...HHT---HHHHHHHHHHHHHHHHH CS
    TetR_C_1  99 leealepgeypllaealelaeiltsedsdaaFefGLellldGle 142
                 +  +l p e+p l+e  + a +++  d  + F fGL+l+l+ le
  KIR64907.1 176 FLPQLPPDEFPYLNESAA-ALVAAGYDPAEEFMFGLDLVLAALE 218
                 99999999*******998.5555556999***********9988 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.38   2.3e+03      20      30 ..       7      17 ..       5      19 .. 0.88
   2 !   31.7   0.1   1.6e-11   9.4e-08       4      47 .]      23      66 ..      20      66 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.38
                HHHHHHHTSSH CS
      TetR_N 20 reIAkrAGvsk 30
                r++A+ AG+sk
  KIR64907.1  7 RQVASDAGLSK 17
                68999***998 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 1.6e-11
                HHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  4 aArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                 A +l  ++G +++++r++A ++G ++ +lY+y ++KeeLl+a+
  KIR64907.1 23 EAIRLADREGVNGLSMRRLAGALGAGAMSLYHYVANKEELLDAM 66
                699**************************************996 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.036   2.2e+02      14      28 ..       5      19 ..       4      21 .. 0.88
   2 ?    9.4   0.0   0.00017         1      11      57 ..      34      79 ..      32      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.036
      HTH_19 14 tqeelaerlgisrsk 28
                +q+++a+++g s+ +
  KIR64907.1  5 KQRQVASDAGLSKQR 19
                79*********9765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00017
      HTH_19 11 lgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidle 57
                +gl+++ la+ lg    +++++  +k  ++   ++  + e+ ++++e
  KIR64907.1 34 NGLSMRRLAGALGAGAMSLYHYVANKE-ELLDAMIDVVFEEIELPPE 79
                69***********************98.5556888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1604.33
//
Query:       KIR64908.1  [L=155]
Description: hypothetical protein TK50_04880 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1107.20
//
Query:       KIR64909.1  [L=391]
Description: lipase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-15   58.0   0.0    7.5e-15   55.5   0.0    1.9  2  Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
    2.9e-08   34.3   0.2    9.5e-08   32.6   0.2    1.9  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   8.4e-19   7.5e-15       7     101 ..     174     274 ..     168     281 .. 0.93
   2 ?   -0.0   0.0     0.095   8.5e+02     129     174 ..     329     376 ..     303     379 .. 0.73

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 8.4e-19
  Lipase_GDSL_3   7 YGsSitqGasasRpglaytailsrklgrevvnLgfsGnalleaeladvlaevdasvfvldllpN......asaeeirerleyfvktlrkahPktpi 96 
                     GsSi+qG  a  p+ +++   +r  g+++vnLgf G+all++  a  + + +a++  + +  N      +  + ++  ++ f++t+r+ hP tp+
     KIR64909.1 174 HGSSISQGSNATSPTATWPVAAARLGGVDLVNLGFGGSALLDPFTARTMRDAPADLISVKIGINlvnadvMRLHAFTPAVHGFLDTIREGHPTTPL 269
                    6************************************************************999988888888899999***************** PP

  Lipase_GDSL_3  97 llved 101
                    l+v  
     KIR64909.1 270 LVVSP 274
                    *9975 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.095
  Lipase_GDSL_3 129 kklkkekekklylisskellgkdeeatv...dgiHpsdlGllryadale 174
                    ++  ++++++l+++++ +l+g++  a++   d  Hp      r+a+ + 
     KIR64909.1 329 AQ-RSSDDPNLHHLDGLDLYGEADFAALplpDQLHPDTATHRRIAERFA 376
                    33.3567899*********999887765444899998888888888776 PP

>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.2   1.1e-11   9.5e-08       3     179 .]     175     370 ..     174     370 .. 0.72

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.1e-11
                    ESHHHHTCTTBCCHCHHCCCCCCCHHHTT-EEEEE.EEHCCH-H..HHHHHHHHCTGGG-T.SEEEEE--CCCCCTT--HHHHHHH..HHHHHHHH CS
  Lipase_GDSL_2   3 GDSiTaGygadgggrsypaylarllaarlgldvvnnlgvsGattallrllerlrdllrlkp.dlvtiliGtNDlgrgvpaaaaaandnleelidal 97 
                    G Si++G++   +  + + + + + a+ +g+d vn lg++G       l++   +  r +p dl+ + iG+N ++++v   +a +++ +  ++d++
     KIR64909.1 175 GSSISQGSN---ATSPTATW-PVAAARLGGVDLVN-LGFGGSAL----LDPFTARTMRDAPaDLISVKIGINLVNADVMRLHAFTPA-VHGFLDTI 260
                    99*****95...55666667.77788888999999.******87....22222222333334************9999999988885.******** PP

                    CCC...GEEE............................CEEEEE-TTT-TTSTCC.HHHHHHHHHHHHHHHHHH.CT-EEE-HHHHHHHCCCCCGG CS
  Lipase_GDSL_2  98 raaapgaril............................vlgplpptpeaaadare.lnaviaaynealrevaae.egvpfvDlhdaladsgerlad 163
                    r+ +p +++l                               +    p + a+ +  l  ++++++++ ++  ++  + + +D  d+  +   ++a 
     KIR64909.1 261 REGHPTTPLLvvspiycpihedtpgpgtfdlaalatgeARFRATGDPAEKASGKLtLSVIREELARITAQRSSDdPNLHHLDGLDLYGEA--DFAA 354
                    *******99999999999999999999999999988663333333333333333345666777777766666667777777775555554..4556 PP

                    BBTTS.SSB-HHHHHH CS
  Lipase_GDSL_2 164 lladdglHPnaaGyrl 179
                    l  +d lHP  a +r+
     KIR64909.1 355 LPLPDQLHPDTATHRR 370
                    6666669999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2557.35
//
Query:       KIR64910.1  [L=325]
Description: abortive phage infection protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-12   45.8   8.4      9e-12   45.2   4.8    2.6  2  CPBP      CPBP intramembrane metalloprotease


Domain annotation for each model (and alignments):
>> CPBP  CPBP intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   4.8     5e-16     9e-12       7      91 ..     165     258 ..     159     259 .. 0.86
   2 ?    0.9   0.1     0.034   6.1e+02      57      82 ..     285     311 ..     260     314 .. 0.71

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 5e-16
                 HHHHHHHHHHH...HHHHHHTTCHHHHHHHH..S-.....HHHHHHHHHHHHHCSGGGHHH.HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
        CPBP   7 vfllalllapl...lEEllfRglllqllqer.gss.....tlailissilFglaHlpngps.vllaalaGlvlgylylktgsllaaillHallnl 91 
                 ++l+++ll+pl   +EE + Rgl+++ + +  + s     ++ +l+ss+lF++aH ++ p+ +++++++   l++++++tg l +a++lHa+ln+
  KIR64910.1 165 ILLATMLLTPLqsaGEEYGVRGLIFRVIGSWtR-SpraglVAGVLLSSVLFTAAHGATDPYiIVWYFVLWTGLAIITWRTGGLEIAVMLHAVLNT 258
                 44555555555555*************999943.458899*********************9********************************8 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.034
                 HH.HHHHHHHHHHHHHHHHHTT-HHHH CS
        CPBP  57 ps.vllaalaGlvlgylylktgsllaa 82 
                 p+ +++++ + ++ ++++++t++  +a
  KIR64910.1 285 PYqLVPTFTVIVITAIIWWRTRETGPA 311
                 333777788888888888888766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2352.19
//
Query:       KIR64911.1  [L=96]
Description: hypothetical protein TK50_04895 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       155  (0.00864521); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 724.08
//
Query:       KIR64912.1  [L=202]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-08   34.3   0.7    2.3e-08   33.7   0.7    1.3  1  TetR_N    Bacterial regulatory proteins, tetR family
     0.0081   16.4   3.5     0.0081   16.4   3.5    2.3  2  TetR_C_6  BetI-type transcriptional repressor, C-terminal
  ------ inclusion threshold ------
      0.025   15.2   0.5       0.23   12.2   0.1    2.3  2  KfrA_N    Plasmid replication region DNA-binding N-term
       0.43   10.4   3.6          2    8.3   0.6    2.5  2  HTH_23    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.7   5.1e-12   2.3e-08       1      46 [.      14      59 ..      14      60 .. 0.96

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 5.1e-12
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLlea 46
                Il+aA++++ae   ++++vr++A+rAGvs g+l  +Fp+ ++L +a
  KIR64912.1 14 ILAAAAAMLAEDLTARLSVRAVAARAGVSTGSLRFHFPTQRALQDA 59
                9**************************************9999776 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.9      0.31   1.4e+03       2      28 ..      11      37 ..      10      70 .. 0.64
   2 !   16.4   3.5   1.8e-06    0.0081       1      96 [.      81     179 ..      81     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.31
                HHHHHHHHHCCSTHSHHHHHHHHHHHH CS
    TetR_C_6  2 rerlraileallpldqerraelavwla 28
                rer+ a+  a+l+ d + r  +++  a
  KIR64912.1 11 RERILAAAAAMLAEDLTARLSVRAVAA 37
                566666666666666555555554444 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHHHCCSTHSHHHHHHHHHHHHHHHHHTT-H...HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSTHHHHHHHHHHHHHHHHHHHHHTCTT CS
    TetR_C_6   1 prerlraileallpldqerraelavwlafwaeaardp...elaelqrenyarlrsnlrallaelaegglradadaeaaAerlaAlidGLwlraalapee 96 
                 +r+rl   l+++l+ ++  +++ ++w   +++    +   e+++ + +++++  +++   l  la++g  +++d ++  + l  l+ GL+++ al  e+
  KIR64912.1  81 ARDRLVNCLRQVLAPTGVGKQAREAWGKAYQMFIAPEpteEVRAAYLALEREGGRRVEYWLTVLADEGAIPREDHARRVRFLLTLLQGLSVERALPAED 179
                 699*****************************98877344566666666666667888889999999999***********************998654 PP

>> KfrA_N  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1     5e-05      0.23       2      32 ..      11      45 ..      10      68 .. 0.90
   2 ?    0.7   0.0      0.19   8.3e+02       3      17 ..     120     135 ..     118     163 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5e-05
      KfrA_N  2 eeqviaaadallaeG..erpTveavrerlG..gGs 32
                +e++ aaa a+lae+   r +v+av +r G  +Gs
  KIR64912.1 11 RERILAAAAAMLAEDltARLSVRAVAARAGvsTGS 45
                799************87778*********987887 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.19
      KfrA_N   3 eqviaaadallaeG.e 17 
                 e+v+aa  al +eG +
  KIR64912.1 120 EEVRAAYLALEREGgR 135
                 89**********9944 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.6   0.00045         2       4      31 ..      12      43 ..      10      47 .. 0.79
   2 ?    2.5   0.1     0.031   1.4e+02       5      23 ..     156     174 ..     152     175 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00045
      HTH_23  4 ereRlrillllae....GlsvreIAreLgvsr 31
                er+ + ++ +lae    +lsvr++A++ gvs 
  KIR64912.1 12 ERILAAAAAMLAEdltaRLSVRAVAARAGVST 43
                44445678888878999*************96 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.031
      HTH_23   5 reRlrillllaeGlsvreI 23 
                  +R r ll l++Glsv+++
  KIR64912.1 156 ARRVRFLLTLLQGLSVERA 174
                 6899***********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.55
# Mc/sec: 1101.88
//
Query:       KIR64913.1  [L=391]
Description: metallophosphoesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-08   33.0   0.5    2.1e-07   31.7   0.5    1.7  1  Metallophos    Calcineurin-like phosphoesterase
      9e-06   26.0   0.3    1.8e-05   25.0   0.3    1.5  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.5   2.3e-11   2.1e-07       2     202 ..     166     333 ..     165     335 .. 0.61

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 2.3e-11
                  EEEEEESBTB..TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHHTSEE....EEEC-TTSCHHHHHHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHl..algggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvkypipv....ylllGNHegfeeellnkygylgifse 93 
                  r+++++D+H+   ++    ++++++++ l     pd+v ++GD+ d+++ +    e+ a+l+   ++     + + GNHe            ++  ++
   KIR64913.1 166 RVVLLTDTHYgpIDRARWSARTIEVVNGL----APDIVCHTGDIADGTVDQR-R-EQAAPLGT--VQArlarVYVTGNHE------------YYGQAQ 243
                  89*******77655556666666666666....99********999993333.2.22244444..22322348889****............222256 PP

                  HHEHHHCEEETSEEEEEETTEEEEEEEESECEEE.THHHHHHHHHHHSCHHHHCC........HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHH CS
  Metallophos  94 pwrsdaevfnnlplaslgsgslkvlllhGgspel.lvsldklgslnleleapepg........dewlkdlekrekadwvivlgHsplyrgsgylfgde 182
                  +w +   ++++ pl        ++++  Gg ++l           + + +a+ +g              l   ++  +v++l+H p          d+
   KIR64913.1 244 GWVDHMRTLGWEPLHN-----RHLVVERGG-ARLvV-------AGVDDVTAASSGvaghradhAAA---LAGTDPLLPVLLLAHQPKQ-------IDD 318
                  6666666777777777.....355566666.33321.......12222222222232322212333...4558888888*********.......666 PP

                  HHHHHHHHTTESEEEEESSS CS
  Metallophos 183 aledllkkygvdlvisGHtH 202
                  a++      gvdl +sGHtH
   KIR64913.1 319 AVA-----AGVDLQLSGHTH 333
                  666.....79********** PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.3     2e-09   1.8e-05       2     128 ..     166     333 ..     165     337 .. 0.57

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2e-09
  Metallophos_2   2 klaiiSDlH....snldaleavlealkevgvdaiihaGDl.....eeeep.....evleellelapvlaVrGNnD..................... 62 
                    ++++++D+H    ++ +  ++ +e +++ ++d ++h+GD+         +       l ++++++  ++V GN++                     
     KIR64913.1 166 RVVLLTDTHygpiDRARWSARTIEVVNGLAPDIVCHTGDIadgtvD---QrreqaAPLGTVQARLARVYVTGNHEyygqaqgwvdhmrtlgweplh 258
                    6899*****9999889999999*****************7553331...2332223677888877999*******988766555554444444444 PP

  Metallophos_2  63 ............eev..veedvlreaaelgtdlpeeaelelagek.....vlliHgdplgvkdalaellkeaeegsdvvvcGHtH 128
                                  v   ++dv +++ +++++  ++    lag++     +ll H+     ++++++++ +   g+d+ ++GHtH
     KIR64913.1 259 nrhlvverggarL-VvaGVDDVTAASSGVAGHR-ADHAAALAGTDpllpvLLLAHQ-----PKQIDDAVAA---GVDLQLSGHTH 333
                    3333333332210.1112222222222222222.1111222333334444444444.....4555555555...77799999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2502.14
//
Query:       KIR64914.1  [L=234]
Description: hypothetical protein TK50_04910 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-20   72.0   2.9    1.7e-10   40.9   0.8    2.7  3  Pentapeptide_4  Pentapeptide repeats (9 copies)
    3.4e-18   64.9  24.2    7.9e-10   38.2   1.7    4.3  5  Pentapeptide    Pentapeptide repeats (8 copies)
    1.2e-12   47.8  20.8    4.2e-07   30.0   5.2    4.1  3  Pentapeptide_3  Pentapeptide repeats (9 copies)
  ------ inclusion threshold ------
      0.018   15.0   0.2        1.5    8.8   0.0    2.1  2  CfAFP           Choristoneura fumiferana antifreeze protein (
        0.1   12.0   0.2       0.86    9.0   0.1    2.1  2  Peptidase_A4    Peptidase A4 family


Domain annotation for each model (and alignments):
>> Pentapeptide_4  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.51   1.8e+03      35      69 ..      38      52 ..      33      61 .. 0.53
   2 !   29.7   0.0   1.5e-10   5.5e-07       4      72 ..      62     131 ..      59     138 .. 0.91
   3 !   40.9   0.8   4.7e-14   1.7e-10       2      55 ..     140     193 ..     139     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.51
  Pentapeptide_4 35 nvnFdecnlsdvdfaevdlkrasFsgcnlknvnfs 69
                    +v+F++ +l d+d+                    s
      KIR64914.1 38 EVTFERLDLGDLDL--------------------S 52
                    34444444444444....................3 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 1.5e-10
  Pentapeptide_4   4 trcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.kl 72 
                      rc f +++ s+  +++ar+ dc F++++l n + ++++   v+++ ++++ +++ +  l++v++sd  l
      KIR64914.1  62 ARCRFTRTDVSGSRLEAARFADCVFESANLANLRTQRSSMLRVRVSTARMTGLQWVNGALRDVTISDsRL 131
                     69***********************************************************999987334 PP

  == domain 3  score: 40.9 bits;  conditional E-value: 4.7e-14
  Pentapeptide_4   2 eftrcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkr 55 
                     +f+++ f++c+l++++F +a+lr+++Ft+c+l+ + F++++ + ++fa +dl+ 
      KIR64914.1 140 TFSSVAFEGCNLTRADFQNADLRGARFTDCDLTGAQFSQASMDGARFARCDLTG 193
                     799999999999999999999999999999999999999999999999999875 PP

>> Pentapeptide  Pentapeptide repeats (8 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.8   2.4e-06    0.0086       1      30 [.      64      93 ..      64      95 .. 0.88
   2 !   16.7   0.4   1.2e-06    0.0043       3      40 .]     121     158 ..     121     158 .. 0.92
   3 !   29.1   1.6   1.5e-10   5.6e-07      13      40 .]     141     168 ..     137     168 .. 0.69
   4 !   38.2   1.7   2.2e-13   7.9e-10       1      35 [.     159     193 ..     159     194 .. 0.90
   5 ?   -2.0   0.0      0.85     3e+03      13      19 ..     200     206 ..     198     211 .. 0.48

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.4e-06
                  -B-TT-B-CCSCCEECCCESEEECT-B-TT CS
  Pentapeptide  1 AnLsgAnLsganLsganlsgAnLtgAnlsg 30
                  +++++++ sg+ L+ a + ++++ +Anl +
    KIR64914.1 64 CRFTRTDVSGSRLEAARFADCVFESANLAN 93
                  889999999999999999999999999966 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.2e-06
                   -TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEECT CS
  Pentapeptide   3 LsgAnLsganLsganlsgAnLtgAnlsgAdLsganLsg 40 
                   L+++  s + L+ ++ + ++++++ ++g++L++a++++
    KIR64914.1 121 LRDVTISDSRLDLSSWRFTTFSSVAFEGCNLTRADFQN 158
                   78888999999999*********************986 PP

  == domain 3  score: 29.1 bits;  conditional E-value: 1.5e-10
                   CEECCCESEEECT-B-TT-EECCEEECT CS
  Pentapeptide  13 LsganlsgAnLtgAnlsgAdLsganLsg 40 
                   +s + ++g+nLt+A++++AdL+ga++++
    KIR64914.1 141 FSSVAFEGCNLTRADFQNADLRGARFTD 168
                   4445577888888888888888888875 PP

  == domain 4  score: 38.2 bits;  conditional E-value: 2.2e-13
                   -B-TT-B-CCSCCEECCCESEEECT-B-TT-EECC CS
  Pentapeptide   1 AnLsgAnLsganLsganlsgAnLtgAnlsgAdLsg 35 
                   A+L+gA+++ ++L+ga +s+A+++gA + ++dL+g
    KIR64914.1 159 ADLRGARFTDCDLTGAQFSQASMDGARFARCDLTG 193
                   89999999999999999999999999999999998 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 0.85
                   CEECCCE CS
  Pentapeptide  13 Lsganls 19 
                   ++ga l 
    KIR64914.1 200 MTGAILA 206
                   4444444 PP

>> Pentapeptide_3  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   2.7   5.6e-06      0.02      14      45 ..      63      92 ..      37      95 .. 0.88
   2 !   30.0   5.2   1.2e-10   4.2e-07       9      47 ..     139     174 ..     121     175 .. 0.91
   3 !   26.7   1.5   1.3e-09   4.6e-06      11      46 ..     160     193 ..     159     194 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.6e-06
  Pentapeptide_3 14 gatFsgaasFsnadFgsadFsgarFtgdvdFs 45
                    +++F+++ ++s+++++ a+F+++ F+  +++ 
      KIR64914.1 63 RCRFTRT-DVSGSRLEAARFADCVFE-SANLA 92
                    7999999.999999999999999999.88886 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 1.2e-10
  Pentapeptide_3   9 aadFrgatFsgaasFsnadFgsadFsgarFtgdvdFsga 47 
                     + +F+ + F+g+ + ++adF++ad++garFt d+d++ga
      KIR64914.1 139 T-TFSSVAFEGC-NLTRADFQNADLRGARFT-DCDLTGA 174
                     5.8999******.9*****************.****998 PP

  == domain 3  score: 26.7 bits;  conditional E-value: 1.3e-09
  Pentapeptide_3  11 dFrgatFsgaasFsnadFgsadFsgarFtgdvdFsg 46 
                     d+rga+F+++ + ++a+F+ a+ +garF  ++d++g
      KIR64914.1 160 DLRGARFTDC-DLTGAQFSQASMDGARFA-RCDLTG 193
                     6777777777.777777777777777776.777765 PP

>> CfAFP  Choristoneura fumiferana antifreeze protein (CfAFP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1    0.0051        18      21      91 ..      64     133 ..      55     151 .. 0.69
   2 ?    8.8   0.0   0.00042       1.5      49      95 ..     146     192 ..     126     207 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0051
       CfAFP  21 cvntnsqisanskcvkstltncyidnselessictrsqysdayvkksvttdcnidksqlygttctgsrydG 91 
                 c+ t + +s  s+ + +  + c  + ++l +  + rs      v +++ t  +  +  l   t ++sr d 
  KIR64914.1  64 CRFTRTDVS-GSRLEAARFADCVFESANLANLRTQRSSMLRVRVSTARMTGLQWVNGALRDVTISDSRLDL 133
                 777777777.6777777777788888888777777777777777777777777777777777777777764 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00042
       CfAFP  49 lessictrsqysdayvkksvttdcnidksqlygttctgsrydGvyit 95 
                  e +  tr+++++a ++ ++ tdc++  +q+ +++  g+r+    +t
  KIR64914.1 146 FEGCNLTRADFQNADLRGARFTDCDLTGAQFSQASMDGARFARCDLT 192
                 4667789*************************999999999766555 PP

>> Peptidase_A4  Peptidase A4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.034   1.2e+02     159     203 ..      86     130 ..      65     135 .. 0.71
   2 ?    9.0   0.1   0.00024      0.86     154     203 ..     136     185 ..      88     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.034
  Peptidase_A4 159 FgtvtFtdasattsdgksvglsgatiidieqngtvltsvevsgds 203
                   F++++  + ++++s+   v +s+a+++ +++ + +l +v++s+++
    KIR64914.1  86 FESANLANLRTQRSSMLRVRVSTARMTGLQWVNGALRDVTISDSR 130
                   555555555656666677999999999999665699999998775 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00024
  Peptidase_A4 154 vplanFgtvtFtdasattsdgksvglsgatiidieqngtvltsvevsgds 203
                     ++ F++v F ++  t+ d ++ +l ga+++d   +g +  +++++g++
    KIR64914.1 136 WRFTTFSSVAFEGCNLTRADFQNADLRGARFTDCDLTGAQFSQASMDGAR 185
                   4599****************************999666677777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1561.15
//
Query:       KIR64915.1  [L=333]
Description: epimerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-20   73.1   0.0      3e-20   72.7   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    8.2e-14   51.9   0.1    4.4e-13   49.5   0.1    1.9  2  NAD_binding_10   NAD(P)H-binding
    2.6e-13   49.7   0.0    4.7e-09   35.8   0.0    2.2  2  NAD_binding_4    Male sterility protein
    8.3e-12   44.7   0.0    1.2e-11   44.1   0.0    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    6.5e-07   29.1   0.1    3.8e-05   23.3   0.1    2.8  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    0.00014   21.5   0.1    0.00022   20.9   0.1    1.3  1  NmrA             NmrA-like family
      0.001   18.2   0.0     0.0016   17.6   0.0    1.4  1  RmlD_sub_bind    RmlD substrate binding domain
  ------ inclusion threshold ------
      0.011   16.2   1.4      0.011   16.2   1.4    2.1  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
      0.067   12.3   0.2       0.15   11.2   0.2    1.7  1  Polysacc_synt_2  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0   1.5e-23     3e-20       1     234 [.       3     225 ..       3     231 .. 0.89

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 1.5e-23
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HH......HHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrs......alerlfkeeqpdavihlAavggvaassedpadfieknlq 93 
                 +++tG++Gf G a++++l + g++v++l+r  +a      +    v +dl+d +      a+ +++   ++dav+h Aa    +a +   + f+++nl 
  KIR64915.1   3 VFLTGGSGFAGGAVLRRLVNDGHTVHALARSATAADAITSAGGLPVSGDLLDLVkpgsgpAWLQILG--EVDAVVHSAA---FMAFWGPDQVFVDRNLL 96 
                 578****************************888888877777888888888877777778888888..89******88...666667799******** PP

                 HHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHH CS
   Epimerase  94 gtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgpl.kpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalir 191
                  t+ l +aa +a vkr++ +s ++v    ++  ++ + +++ + k n +Y++ Kl  e+ +  + + + ++ +++r+  l G +     +++ +  +i 
  KIR64915.1  97 PTRALYQAAVDARVKRFVLVSAASVSTGTNH--DHTVDENSDTgKANIAYSRVKLRTEQELLVLPHGN-TSLVVIRPPFLWGQG-----MTHTLQGFID 187
                 **********************999887777..5666666677799****************886665.9**************.....********** PP

                 HHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-ST CS
   Epimerase 192 kilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdk 234
                 ++ +g+  +  ++ g++  df++v+ +a +i l+l++    d+
  KIR64915.1 188 SVEAGR--FSWIDGGRHMVDFCHVDNLAYIITLALDRG---DH 225
                 *****8..9999************************94...44 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.1   2.2e-16   4.4e-13       1     146 [.       7     173 ..       7     187 .. 0.71
   2 ?    0.0   0.0      0.33   6.6e+02      10      70 ..     215     276 ..     213     300 .. 0.76

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 2.2e-16
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-......CCHHHHHHTT-SEEEES-......--TCC..HHHH..HH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtd......vedlaealkgadaVvsal......ggggk..deeg..ak 79 
                     G++G  G +++++l+++ gh+v+al+R++  ++++ + +g   v+gd++d        +  + l  +daVv ++      g+++   d++   ++
      KIR64915.1   7 GGSGFAGGAVLRRLVND-GHTVHALARSATAADAITS-AGGLPVSGDLLDlvkpgsGPAWLQILGEVDAVVHSAafmafwGPDQVfvDRNLlpTR 99 
                     9****************.5**************9986.55568899999854433236899999*****988886865544443365444499** PP

                     HHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHH....CCHHHHHHHHHHHHH...HHHSSSEEEEEEE-CE CS
  NAD_binding_10  80 nivdaakeagvkRfvlvsaigvgdevpgefgewnke....llkaylaakraaeel...lrasgldwTivrpggL 146
                     ++ +aa  a vkRfvlvsa+ v   +++++    ++    +  ay + k + e++   l + +   +++rp++L
      KIR64915.1 100 ALYQAAVDARVKRFVLVSAASVSTGTNHDHTVDENSdtgkANIAYSRVKLRTEQEllvLPHGNTSLVVIRPPFL 173
                     *********************98754444433333311112224445666666652223446666777777666 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.33
                     HHHHHHHC-T-EEEEEETT..HHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES--- CS
  NAD_binding_10  10 lvkellargghevtalvRn..peklaeleaeeglevvegdvtdvedlaealkgadaVvsalgg 70 
                     +++ +l+rg+h +  +v +  p  + ++  ++ l +  +dv+ ++++ +a++   a ++ +++
      KIR64915.1 215 IITLALDRGDHGLICYVTDgsPRPARDFF-TPLLATRGIDVSAANSVPRAVASPLATLMQTAA 276
                     67889999999999999986677777887.689999999999999999999876655555544 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   4.5e-05      0.09       1      37 [.       5      39 ..       5      43 .. 0.90
   2 !   35.8   0.0   2.4e-12   4.7e-09      80     239 ..      63     199 ..      47     216 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.5e-05
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHH CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesa 37
                   lTG++GF G  +l++L+++    ++++l+R+ + ++a
     KIR64915.1  5 LTGGSGFAGGAVLRRLVNDGH--TVHALARSATAADA 39
                   8*****************998..9******9877765 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 2.4e-12
                    HHHHHHHH--EEEE--SS-S.STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H......HHH--EEEETTTCCC CS
  NAD_binding_4  80 dlqelaeevdviihsaAtvnfdepykellrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeegekeekldederaklkglpn 174
                    ++ ++  evd+++hsaA + f +p +++++ N++ tr + + a   + +  ++ vS  ++++g+++++                 de ++ ++ + 
     KIR64915.1  63 AWLQILGEVDAVVHSAAFMAFWGPDQVFVDRNLLPTRALYQAAVDARVK-RFVLVSAaSVSTGTNHDH---------------TVDENSDTGKANI 142
                    6788999*************************************99988.*******66666666643...............3556666667777 PP

                    HHHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-....-SSST---TTSHHHHHHHHHHHH-EEES-SB CS
  NAD_binding_4 175 tYeqsKalaEklvrearrrsglpvvivRpsiitg....esktGwingsdlgirgllgliakgvlpeilg 239
                    +Y++ K   E+ +     +++  +v++Rp+ + g    ++ +           g++ +++ g+++ i g
     KIR64915.1 143 AYSRVKLRTEQELLVLP-HGNTSLVVIRPPFLWGqgmtHTLQ-----------GFIDSVEAGRFSWIDG 199
                    *********99888887.45999*********8844444444...........4455555555554444 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   6.1e-15   1.2e-11       2     274 ..       5     256 ..       4     262 .. 0.79

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 6.1e-15
   3Beta_HSD   2 vtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdk......dkleealegvdvvihlaslvdvagkltedeimkvnvk 94 
                 +tGg+GF G a+ ++Lv+ ++  +v++l  + s +  + +++ +    + gD++d       +   + l +vd+v+h a+ +   g   ++ + + n+ 
  KIR64915.1   5 LTGGSGFAGGAVLRRLVNDGH--TVHAL--ARSATAADAITSAGGL-PVSGDLLDLvkpgsgPAWLQILGEVDAVVHSAAFMAFWG--PDQVFVDRNLL 96 
                 69****************995..88876..5556666777777777.99***9985222222567899***************999..788899***** PP

   3Beta_HSD  95 GTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdkllvpll 193
                  Tr + +a+v+a v+++v +S+a+v  +  + ++ +  dE+     + + ay++ K   E+ +l         g +   + +Rp  ++G+g + +++ +
  KIR64915.1  97 PTRALYQAAVDARVKRFVLVSAASVSTGT-NHDHTV--DENSDT-GKANIAYSRVKLRTEQELLVLPH-----G-NTSLVVIRPPFLWGQGMTHTLQGF 185
                 *************************9993.344444..566654.456779*****999997776555.....2.345689****************** PP

   3Beta_HSD 194 kqlaklglalfkigdeevlsdrvYvgNvawahilAaralqdpkkkssvagqayfisddsPvesyddfnltllkelglelks 274
                   ++  g         + ++d+  v+N+a+++ lA      +      +g   +++d sP     df ++ll   g++ ++
  KIR64915.1 186 IDSVEAGRFSWID-GGRHMVDFCHVDNLAYIITLALDRG--D------HGLICYVTDGSPRP-ARDFFTPLLATRGIDVSA 256
                 *******555555.455669**************97532..2......46667888888888.788888888887777655 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   1.9e-08   3.8e-05       2     332 .]       5     325 ..       4     325 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.9e-08
                    EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-...HHHHHHHHHHH.T-SEEEE--S---HHHHTT CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltD...ssslerllaev.qpdevynLAAqshVdvsfe 93 
                     TG++Gf G  ++++L++ g++vh + r ++  +++ i +    p          ++gDl D     s    l+   ++d+v++ AA  +    + 
     KIR64915.1   5 LTGGSGFAGGAVLRRLVNDGHTVHALARSAT--AADAITSAGGLP----------VSGDLLDlvkPGSGPAWLQILgEVDAVVHSAAFMA---FWG 85 
                    6************************987554..566777766555..........456665533233434444433456*******9865...344 PP

                    SHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGG.G-S-SSSSB-TTS--.---SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTT CS
  GDP_Man_Dehyd  94 kPeytaevnvlGtlrLLeairalglekkvrfyqaStsEv.YGkvqevpqtEttpf.yPrsPYaaaKlyadwivvnyreayglfavngilfnhespr 187
                      + +++ n+l t  L +a+ ++ +   +rf+ +S + v  G+  ++ ++E+  + +++  Y+  Kl  ++          l+  n+ l     p 
     KIR64915.1  86 PDQVFVDRNLLPTRALYQAAVDARV---KRFVLVSAASVsTGTNHDHTVDENSDTgKANIAYSRVKLRTEQEL------LVLPHGNTSLVVIRPPF 172
                    45689***************99877...599999988873599999999999877368889999999877644......45555566666667788 PP

                    S-TTSCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS--.-EEE-TT-EEECHHCHHCCHHCCCHHHHHH......... CS
  GDP_Man_Dehyd 188 rgetfvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpe.dyviatgethsvrefvelaflelgktiewegkgeeevg. 281
                       + +t+++  ++  +++g+ +   +  +++  d+ hv+  + ++ l+l ++      ++ +g     r+f++  ++  g+++ + ++  + v+ 
     KIR64915.1 173 LWGQGMTHTLQGFIDSVEAGRFSW--IDGGRHMVDFCHVDNLAYIITLALDRGDHGlICYVTDGSPRPARDFFTPLLATRGIDVSAANSVPRAVAs 266
                    8888999*************9655..578899******************996654156788999999*************999998877777763 PP

                    ..........TTGGCCCEECGG--S....S--SB--B-THHHHHHH----SS-HHHHHHHH CS
  GDP_Man_Dehyd 282 ......rakesgkvvvevdpkyfrp....gevdlllgdaskakeeLgWkpkvsfeelvrem 332
                          +     k + + +  +  p       + ++ d+++a+ +Lg++p +++ee++r+m
     KIR64915.1 267 platlmQ--TAAKARRSATAPPLTPwiisFMGRDRVYDITRARLRLGYQPAITVEEGLRQM 325
                    3333220..2333333333334444222233456789**********************98 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   1.1e-07   0.00022       3     106 ..       5     122 ..       3     134 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.1e-07
                 ESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT......-HHHHHHHHTT-SEEEE---GG..........S-HHHHHHHH CS
        NmrA   3 viGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdld......dkeslvealkgvdvvfsvtgfy..........skeiedgkkl 85 
                  +G++G  G++v r l+++gh+v al R     +a+++ +aG   v+gdl       +     ++l +vd+v  + +f+          + ++    +l
  KIR64915.1   5 LTGGSGFAGGAVLRRLVNDGHTVHALARSA--TAADAITSAGGLPVSGDLLdlvkpgSGPAWLQILGEVDAVVHSAAFMafwgpdqvfvDRNLLPTRAL 101
                 68**************************86..57888999*********775888884455556777777777666665666777777777799999** PP

                 HHHHHHHS-SEEEEEE---GG CS
        NmrA  86 vdAakeaGvkhfiySslgddn 106
                  +Aa+ a vk+f+  s ++ +
  KIR64915.1 102 YQAAVDARVKRFVLVSAASVS 122
                 ************987766555 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   8.3e-07    0.0016       1     157 [.       1     179 [.       1     198 [. 0.80

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 8.3e-07
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT..................T--TTSHHHHHHHHHHH.--SEEEE------HHHHHHSHHHHHHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre..................eldltdaeavaellkea.kpdvvvnaAAytavDkaEseeeaayav 77 
                    mk+ +tG++G  G ++ ++l ++g+ v+al r+                   ldl ++ +  + l+   + d+vv+ AA+ a     +    ++ +
     KIR64915.1   1 MKVFLTGGSGFAGGAVLRRLVNDGHTVHALARSataadaitsagglpvsgdLLDLVKPGSGPAWLQILgEVDAVVHSAAFMAFWGPDQVFVDRNLL 96 
                    89****************************9999**************998899999988888777652689***********9999887777666 PP

                    HTHHHHHHHHHHHHCT-EEEEEEEGGGS-S-TTS-.B-TTS----SS.HHHHHHHHHHHHHHH...H-SSEEEEEE-SEESSSSS CS
  RmlD_sub_bind  78 naeavealAeaaaavgalLihvStDyVFdGekkrp.YeeddetsPln.vYGrtKlaGEqavla...agkkalivRtswvygekgk 157
                      +a  + A  a+     ++ vS   V  G++++    e++ t+  n +Y r Kl+ Eq  l     +   +++R + ++g+   
     KIR64915.1  97 PTRALYQAAVDARV--KRFVLVSAASVSTGTNHDHtVDENSDTGKANiAYSRVKLRTEQELLVlphGNTSLVVIRPPFLWGQGMT 179
                    66666655554444..357778999999999665546666666655526********9976654446678889999999998654 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.2   1.4   5.3e-06     0.011       1     108 [.       7     131 ..       7     163 .. 0.73
   2 ?    0.0   0.1      0.51     1e+03      84      92 ..     269     277 ..     213     326 .. 0.53

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.3e-06
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgapeleedgvrvh..rlpvprrpspladlaalralrrll....rqrrerpdvvhahs.ptagla 87 
                      gG+g    +++r+L+ +Gh V+ l++++++++    ++g++v    l++   +s++a+l+ l  + +++      + ++pd v +   ++   a
       KIR64915.1   7 GGSGFAGGAVLRRLVNDGHTVHALARSATAADAITSAGGLPVSgdLLDLVKPGSGPAWLQILGEVDAVVhsaaFMAFWGPDQVFVDRnLLPTRA 100
                      7888888999****************99999998889999998555777766779999999988877765433237899998887654665566 PP

  Glyco_trans_4_4  88 arlarrrrgiplvvtl..........hglll 108
                        +a++ ++++ +v +          h++++
       KIR64915.1 101 LYQAAVDARVKRFVLVsaasvstgtnHDHTV 131
                      6666667777755544334444444445554 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.51
  Glyco_trans_4_4  84 aglaarlar 92 
                      a l   +a+
       KIR64915.1 269 ATLMQTAAK 277
                      111112222 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   7.6e-05      0.15      77     133 ..      70     123 ..       3     162 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.6e-05
                      T-SEEEE------HHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGGSS CS
  Polysacc_synt_2  77 kvdvvfhaAAlKhVPlveenpleaiktNvlgtenvieaaieagvkkvvliStDKAvn 133
                      +vd+v+h+AA+      ++     ++ N l t+ + +aa++a+vk++vl+S+     
       KIR64915.1  70 EVDAVVHSAAFMAFWGPDQ---VFVDRNLLPTRALYQAAVDARVKRFVLVSAASVST 123
                      7899999999865544333...46899************************866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2337.82
//
Query:       KIR64916.1  [L=274]
Description: enoyl-CoA hydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-30  105.3   0.0      4e-30  105.0   0.0    1.1  1  ECH_1     Enoyl-CoA hydratase/isomerase
    4.8e-10   39.5   0.0    9.8e-10   38.4   0.0    1.4  1  ECH_2     Enoyl-CoA hydratase/isomerase
     0.0095   15.4   0.0      0.016   14.7   0.0    1.3  1  DUF99     Protein of unknown function DUF99


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   0.0   6.7e-34     4e-30       4     212 ..      11     220 ..       8     235 .. 0.94

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 6.7e-34
                 TTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEE.BTSEEEEEB-HHHHHHHHCHHHHHHHCCHHHHHHHHHHSSSEEEEEE-SEEET CS
       ECH_1   4 agvaviklnrPeavNalsaelltEliqalekleddksvravvLtG.gdkaFaaGadlkemaeeekakqallkeevlelwtklytvpkpviaavnGaaig 101
                 + v  +++  P + N + a +++El++   +l  +++v +v+  +  +++F    d  ++ +        +   + el ++l   p + ia ++G   g
  KIR64916.1  11 SKVRRVTFASP-PFNLIGADTVAELLDIVDRLSGEEQVSVVIFDSaTPGYFFNHVDSDQIPAIADMAGSGPLPGFVELGMRLAAAPFVSIASIRGRTRG 108
                 67889******.**********************************************999987788888999************************** PP

                 HHHHHHHHSSEEEEETT.TEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHHHSCHHHHH CS
       ECH_1 102 GGlelalacDiviaadn.asfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaeklaekspaalr 199
                 GG+e   a D+++a+++ a f ++e+ +Gl+pgaggt++l+  +G+ +A e+ll+g+ + a+ a++ G v +++p+++l +   ++a+++a+  ++a+ 
  KIR64916.1 109 GGAEYTAAFDLRYASREqAIFCQPEVGFGLVPGAGGTERLTHLLGRDRALEVLLTGQDYDADRAAQYGWVTRAIPDAELDDFVNAVARRIASFDKQAIT 207
                 **************976266******************************************************************************* PP

                 HHHHHHHHHHHHH CS
       ECH_1 200 qlkealnakleda 212
                 ++k ++n+ +   
  KIR64916.1 208 AVKTQVNRSTLPP 220
                 *******987654 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   1.6e-13   9.8e-10      16     207 ..      27     218 ..      14     249 .. 0.75

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1.6e-13
                 -HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEETHHHHHHTTSSEEEE CS
       ECH_2  16 slemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivmGgGvGlsvhgsfrvv 114
                   + v +l +++++ + +++v++v+ ++a++  f    D  ++   a+   +          +l  ++a  p   +a + G + GgG+  ++   +r +
  KIR64916.1  27 GADTVAELLDIVDRLSGEEQVSVVIFDSATPGYFFNHVDSDQIPAIADMAGSG---PLPGFVELGMRLAAAPFVSIASIRGRTRGGGAEYTAAFDLRYA 122
                 55666666666666666666666666666666666666655554444443322...2333446778889999999**********************99 PP

                 -.TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT.........--------.... CS
       ECH_2 115 t.ertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpseklealeeaLaelessd.eeaveevleelaeeae 207
                 + e+++f  PE++ Gl+P  Gg+  L++l g   +l + lTG+  ++  a + g  t  +p+++l+++ +a+a+   s  ++a+++v +++++++ 
  KIR64916.1 123 SrEQAIFCQPEVGFGLVPGAGGTERLTHLLGrDRALEVLLTGQDYDADRAAQYGWVTRAIPDAELDDFVNAVARRIASFdKQAITAVKTQVNRSTL 218
                 847789**********************9775899**********************************999985333235555555444443333 PP

>> DUF99  Protein of unknown function DUF99
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.6e-06     0.016      47      87 ..      27      69 ..      12      76 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.6e-06
                -S-HHHHHHHHHCC-.TTTTEEEEEESSSEETT.TEE--HHHH CS
       DUF99 47 GtDateaiielvkrl.eredirvvlldGitiag.FNvvDlerl 87
                G D   +++++v+rl   e+++vv+ d+ t+++ FN vD +++
  KIR64916.1 27 GADTVAELLDIVDRLsGEEQVSVVIFDSATPGYfFNHVDSDQI 69
                8999****************************637****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2061.69
//
Query:       KIR64917.1  [L=201]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-15   56.6   0.1    3.5e-15   55.5   0.1    1.6  1  TetR_N     Bacterial regulatory proteins, tetR family
    1.2e-13   51.7   3.7    1.2e-13   51.7   3.7    2.1  2  TetR_C_33  Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
       0.49   10.6   7.0      0.071   13.4   1.7    2.3  2  TetR_C_16  Tetracyclin repressor-like, C-terminal domain
        3.2    8.5  10.1       0.42   11.4   4.0    2.5  2  TetR_C_15  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.1   7.8e-19   3.5e-15       1      47 []      14      60 ..      14      60 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 7.8e-19
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                +l+aA+el+ + G +a+t+r++ +rAGv++ga Yr+Fp+Ke L+ a+
  KIR64917.1 14 LLEAAAELLDQGGLEAVTLRAVGARAGVTRGAPYRHFPDKEHLMIAV 60
                79*****************************************9986 PP

>> TetR_C_33  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.6      0.15   6.9e+02      39      74 ..       6      40 ..       3      65 .. 0.69
   2 !   51.7   3.7   2.6e-17   1.2e-13       1     103 [.      87     185 ..      87     186 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.15
                CCHHHHHHHHHHHGGG---TH--CCHHHHHHHHHHH CS
   TetR_C_33 39 agarvlalllaalaalvaaglppadavaaaralwaa 74
                 +a + ++ll+a+a+l+++g   ++++ +a+ ++a 
  KIR64917.1  6 TAAATRQALLEAAAELLDQGG-LEAVTLRAVGARAG 40
                555666777777777777776.33366666666554 PP

  == domain 2  score: 51.7 bits;  conditional E-value: 2.6e-17
                 HHHHHHHHHHHHHH-HHHHHHCCSS--TT-S-HGHHCCCCHHHHHHHHHHHGGG---TH--CC.HHHHHHHHHHHHHHHHHHHHCTTT...TSSS-HHH CS
   TetR_C_33   1 lralarayrrfAlahpaeYallfgspvpgyaapdelaaagarvlalllaalaalvaaglppad.avaaaralwaalhGlvsLelfghf...glpadpda 95 
                 lral  a+++ A+++p++Y+l+f sp+   ++p++ a+a++++ +  l+++aa+     ++++ a++ a++l a++ G++ +el g++   ++ + +++
  KIR64917.1  87 LRALLAAFINLARRQPHLYRLMFSSPA---SDPTAFARAAQPTQDESLQVVAAV-----TGEHhARRYAALLLASADGIAGMELTGQLegdKWHTTAEE 177
                 79*********************8888...58889****************999.....43444999*********************97666888899 PP

                 HHHHHHHH CS
   TetR_C_33  96 lferlvda 103
                 l + lv++
  KIR64917.1 178 LIDTLVTM 185
                 99988876 PP

>> TetR_C_16  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.3      0.44     2e+03      26      57 ..       9      23 ..       2      44 .. 0.45
   2 ?   13.4   1.7   1.6e-05     0.071       5      78 ..      88     160 ..      85     189 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.44
                HHHH--------HHHHHHHHHHHHHHCTTTS- CS
   TetR_C_16 26 llrsalsseeaaellrefleeqvlaplaarlg 57
                + r a                 +l++ a+ l+
  KIR64917.1  9 ATRQA-----------------LLEAAAELLD 23
                33333.................3333333332 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHHHHHT-HHHHHHHHH--------HHHHHHHHHHHHHHCTTTS-STTHHHHHHHHHHHHHHHHHH CS
   TetR_C_16   5 erlvravlevwepearepllallrsalsseeaaellrefleeqvlaplaarlggpdaelRaalvasqllGlala 78 
                 ++l++a++++ + ++ + ++ ++ s +s++ a +++ + ++++ l+ +aa +g  +a++ aal+++   G+a +
  KIR64917.1  88 RALLAAFINLAR-RQPHLYRLMFSSPASDPTAFARAAQPTQDESLQVVAAVTGEHHARRYAALLLASADGIAGM 160
                 578888888888.8999999*******************************************99988777755 PP

>> TetR_C_15  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.4      0.34   1.5e+03      38      57 ..       5      24 ..       2      39 .. 0.71
   2 ?   11.4   4.0   9.3e-05      0.42       3     104 ..      84     186 ..      82     189 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.34
   TetR_C_15 38 elvealeqriaealaalLar 57
                e ++a +q + ea+a+lL++
  KIR64917.1  5 ETAAATRQALLEAAAELLDQ 24
                55677777777777777776 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 9.3e-05
   TetR_C_15   3 eealdalvdallaahrenpalrrvlleeapslgel..elvealeqriaealaalLarrrpelppedlelaafvaveaveallhlaleedp....adrea 95 
                 ++ l+al+ a++ + r++p l r++++  +s +++  ++++  +++  + +aa+  ++      +++  a ++a +   a ++l  + ++    +++e+
  KIR64917.1  84 AAKLRALLAAFINLARRQPHLYRLMFSSPASDPTAfaRAAQPTQDESLQVVAAVTGEHH-----ARRYAALLLASADGIAGMELTGQLEGdkwhTTAEE 177
                 56689**********************99766666333333334444444444433333.....33334444444433444444444443445788888 PP

   TetR_C_15  96 liaelkrll 104
                 li+ l++++
  KIR64917.1 178 LIDTLVTMV 186
                 888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1509.16
//
Query:       KIR64918.1  [L=116]
Description: nitrogen regulatory protein P-II [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-05   25.3   0.0      2e-05   24.8   0.0    1.3  1  DUF190    Uncharacterized ACR, COG1993
     0.0049   17.4   0.0      0.006   17.2   0.0    1.1  1  P-II      Nitrogen regulatory protein P-II


Domain annotation for each model (and alignments):
>> DUF190  Uncharacterized ACR, COG1993
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   2.2e-09     2e-05      20      93 ..      22      96 ..      13     100 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2.2e-09
                HHHHHHHHHTT-S--EEEE-S---------------------EEEEEEEE-HHHHHHHHHHHHT----..SEEEEE CS
      DUF190 20 eaivelareeglagatvlrGieGfgassrihtakllelsedlPvvieivdteekieaflpelkelvke..glvtle 93
                +a+ +l++ +g++g t l G+ Gfg+++ +h+ +ll  ++   v++ +v   +++ a+++ l++++ +  g++++ 
  KIR64918.1 22 DAVRTLLHASGVSGWTSLSGVSGFGHHG-THEGRLLFNDRAGLVMVIVVLPYDRATAVVTGLRDILAHrpGVMFVS 96
                57778999*****************777.8888888888888999999****************998866666655 PP

>> P-II  Nitrogen regulatory protein P-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.7e-07     0.006       1      79 [.      12      87 ..      12      98 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6.7e-07
                EEEEEEGGGHHHHHHHHHHTTGGCEEE.EEEEEEESTCCEEEECTTEEEEEEEEEEEEEEEEEEGGGHHHHHHHHHHHH- CS
        P-II  1 ieaiirpekleevkeaLekagvkgltv.tevkGrGkqkghtelyrgaeyevellpkvkleivvsdedvekvveaiikaak 79
                +e++ r ++ ++v++ L++ gv+g t  + v+G+G+      +++g+   ++    v++ +v + +++ +vv  + +   
  KIR64918.1 12 VEVVTRADDADAVRTLLHASGVSGWTSlSGVSGFGHHG----THEGRLLFNDRAGLVMVIVVLPYDRATAVVTGLRDILA 87
                7899*******************999626799999877....67788888888888999999999999999987766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 839.29
//
Query:       KIR64919.1  [L=93]
Description: hypothetical protein TK50_04960 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 726.33
//
Query:       KIR64920.1  [L=401]
Description: glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-10   39.1   0.0    1.4e-09   38.2   0.0    1.5  1  Glyco_transf_28  Glycosyltransferase family 28 N-terminal dom
    8.4e-05   21.5   0.1    0.00013   20.9   0.1    1.3  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
     0.0004   20.4   0.0    0.00063   19.8   0.0    1.2  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
  ------ inclusion threshold ------
        0.1   12.5   0.2       0.32   10.9   0.2    1.8  1  Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal do


Domain annotation for each model (and alignments):
>> Glyco_transf_28  Glycosyltransferase family 28 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0     3e-13   1.4e-09       1     131 [.       3     127 ..       3     132 .. 0.91

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 3e-13
                      EEEEE-SSHHHHHHHHHHHHHHHCTT-EEEEEEETCCCHHHHHHCCT-EEEE---GHCTT..CHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC CS
  Glyco_transf_28   1 ivllggGTgGhvfPalAlakeLkkegheVrylgtkrgleerlveeaglefepiageklrrklspknlkeilkvlkavvkakkilkeakpdavvg 94 
                      ++l++ G +G+v+P + la +L++ g  Vr +++++ ++erl +++g+e++pi+ + +r+  + + +++++ v    +ka +++ e+ +++ ++
       KIR64920.1   3 VLLSTFGGRGDVEPLVGLAIALREAGAGVR-VCAPPDCAERL-DQFGVELVPIGQS-VREMVHGPAPTRVPDV---PRKAAELMAEQFAELPAA 90 
                      6899**************************.***********.*******999988.7776799999999999...999*************** PP

                      CCCCCCHCCCCCHCCCTTHCCCCCHCTS-ECCCCCCC CS
  Glyco_transf_28  95 tggyvslpaviaaplaripviihEqnaipglanktls 131
                      + g+  ++a    p       ++E ++i + ++ + +
       KIR64920.1  91 AEGSDVMVATGLFPVTASVQSVAERLGIRYVYAAYCP 127
                      **99988888888899999999999999999887776 PP

>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   2.9e-08   0.00013     260     406 ..     229     371 ..     182     389 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.9e-08
       UDPGT 260 plpkeleefvqssGehGvvvfSlGsmvseipeekanaiAsaLakipq.kvlWr.fdgkkPstLakntllvkWlPqndlLgHPktkAFvtHaGangvyEa 356
                 pl   l++f+++ G+   v++ +Gsm    p++ a++  +a+   +   v+ r + g +Ps  a + ++v  +   +l +     A v H+Ga +   a
  KIR64920.1 229 PLDPGLKAFLDA-GDP-PVYVGFGSMPA--PQHAAEVALAAIRAHGRrAVVSRgWAGLTPSASADDVRVVAEVNHRALFRR--CAAVVHHGGAGTTTTA 321
                 555666677776.443.47999***955..55544444455555554145554589**********************995..789************* PP

       UDPGT 357 isnGvPmvglPlFgdqrdNikrmeakgaavtlnvkemtsedllnAlkevi 406
                    G P v +P  +dq+  ++r++a g + +      t e l+ Al + +
  KIR64920.1 322 ALTGAPQVLIPQMADQPYFAARVAALGIGAAHSGPSPTVESLAAALGQAL 371
                 **************************999998888888888888887766 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.4e-07   0.00063      68     155 ..     301     384 ..     279     397 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.4e-07
                      HHHHHH-EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS---S---SSCH CS
  Glyco_tran_28_C  68 eaikaadLvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaeklrlaekskas 155
                      ++ ++   v+ ++Gagt   ++  g+p +l+p       +q + a+ ++  g +  +     t e+L++al + +++++r  + ++a+
       KIR64920.1 301 ALFRRCAAVVHHGGAGTTTTAALTGAPQVLIPQMA----DQPYFAARVAALGIGAAHSGPSPTVESLAAALGQALSPETRSRAAATAA 384
                      55666778999************************....************************************9999855555553 PP

>> Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   7.1e-05      0.32      49      97 ..     339     387 ..     322     399 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.1e-05
  Peptidase_M17_N  49 gekakrvllVGLGkeeeltaealrkaagaaaralkgakvttiavalp.le 97 
                       + a rv+++G+G++ + ++ +++++a+a  +al+ +  +++a+  + + 
       KIR64920.1 339 YF-AARVAALGIGAAHSGPSPTVESLAAALGQALSPETRSRAAATAAtIR 387
                      44.99*******************************99999999888443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2790.39
//
Query:       KIR64921.1  [L=98]
Description: MerR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-12   46.9   0.1    2.8e-12   46.5   0.1    1.1  1  MerR_1    MerR HTH family regulatory protein
    9.8e-12   44.5   0.0    1.4e-11   44.0   0.0    1.2  1  MerR      MerR family regulatory protein
    6.4e-07   29.5   0.1    4.9e-05   23.4   0.0    2.1  2  HTH_17    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.1   4.7e-16   2.8e-12       1      64 [.      17      80 ..      17      83 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 4.7e-16
                EEHHHHHHHHTS-HHHHHHHHHHTT-S-EE-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG--- CS
      MerR_1  1 ysigevakilgvtthtlrywekegllkpkrteggrryYtdedierLklikyLlkrGltlkgikk 64
                y+ig++a++lg+t++ lr  ++  l++p r++gg+r+Y++ +++  ++ +++ ++G  l+++ +
  KIR64921.1 17 YTIGQAAEMLGTTQDFLRRLDEAKLINPHRSSGGHRRYSRYQLRLAARAREMVDQGTALEAACR 80
                9*********************************************************998755 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   2.3e-15   1.4e-11       1      38 []      18      54 ..      18      54 .. 0.99

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 2.3e-15
                EHHHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSSEEE CS
        MerR  1 tIgevAeltGvsprtLRyYEreGLipppeRtegGyRlY 38
                tIg++Ae++G + + LR++++  Li  p+R++gG+R+Y
  KIR64921.1 18 TIGQAAEMLGTTQDFLRRLDEAKLI-NPHRSSGGHRRY 54
                9************************.***********9 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   8.1e-09   4.9e-05       2      40 ..      17      56 ..      16      60 .. 0.95
   2 !    4.4   0.0    0.0072        43      18      50 ..      65      95 ..      62      96 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 8.1e-09
      HTH_17  2 ltveEaAelLgvsrstvyrlirrgelpaak.iGrrwripr 40
                +t+ +aAe+Lg  +  ++rl  ++ + +++  G+++r++r
  KIR64921.1 17 YTIGQAAEMLGTTQDFLRRLDEAKLINPHRsSGGHRRYSR 56
                9****************************99*******98 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0072
      HTH_17 18 vyrlirrg.elpaakiGrrwriprsdleewlekr 50
                +++++++g  l aa +   + i ++ lee l+++
  KIR64921.1 65 AREMVDQGtALEAACR---IIILEDQLEEALRQN 95
                799*****99988889...99********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.46
# Mc/sec: 641.21
//
Query:       KIR64922.1  [L=397]
Description: hypothetical protein TK50_04985 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-16   58.4   0.2      2e-15   56.7   0.2    1.9  1  LAL_C2           L-amino acid ligase C-terminal domain 2
    1.5e-10   40.9   0.0    5.6e-10   39.0   0.0    1.9  2  ATP-grasp_4      ATP-grasp domain
    1.1e-09   38.5   0.0    1.8e-09   37.9   0.0    1.3  1  ATP-grasp_3      ATP-grasp domain
    6.9e-08   32.5   0.0    1.6e-05   24.8   0.0    2.3  2  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
    1.7e-07   31.0   0.0    2.9e-07   30.2   0.0    1.3  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    1.2e-05   25.1   0.0    6.4e-05   22.7   0.0    2.1  2  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
    0.00015   21.4   0.0    0.00025   20.7   0.0    1.3  1  ATP-grasp        ATP-grasp domain
    0.00019   21.0   0.0    0.00061   19.3   0.0    1.8  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
     0.0002   21.8   0.3     0.0048   17.4   0.2    2.6  2  ATPgrasp_N       ATP-grasp N-terminal domain
  ------ inclusion threshold ------
      0.024   14.1   0.0      0.059   12.8   0.0    1.6  2  ATP-grasp_5      ATP-grasp domain
      0.083   12.1   0.0       0.27   10.5   0.0    1.7  2  ATPgrasp_ST      Sugar-transfer associated ATP-grasp


Domain annotation for each model (and alignments):
>> LAL_C2  L-amino acid ligase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.2   1.2e-18     2e-15       1      77 [.     321     396 ..     321     397 .] 0.97

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 1.2e-18
      LAL_C2   1 rfltaprpGrlkaveGleearalpgvveveltvkpGdevrpprssgdrlGyviatgdtaeeaeaaaeeaaaeiriev 77 
                 rfl++  +Grl +++G+e+ar+++g ve +l   +G+e+r++r++ d +++v+a+g+  ee  ++ae++++e+++++
  KIR64922.1 321 RFLCSR-KGRLLRLDGVERARRMAGAVETRLMTPIGSELREARDNMDHIAFVVARGALLEESSERAEAMLRELTVVT 396
                 788888.*******************************************************************986 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.5   2.5e+03      54      78 ..       5      28 ..       2      39 .. 0.77
   2 !   39.0   0.0   3.4e-13   5.6e-10       2     156 ..     142     282 ..     141     285 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.5
  ATP-grasp_4 54 sflvEeyieGeEfavdayfdeeGep 78
                 + lv  ++e  Efa+  ++ + G  
   KIR64922.1  5 RLLVLGFVENREFAIRTLL-RSGVR 28
                 6788889999*****9998.55554 PP

  == domain 2  score: 39.0 bits;  conditional E-value: 3.4e-13
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilnilkkefaseedvsdrly 99 
                   +Pv +KP+++++S+GV ++ +++ ++ + a+       ++++  +    ++ +lvEe + G+E++v+ +   +Ge+++l  ++ke    ++   r +
   KIR64922.1 142 GFPVCVKPVDQAGSIGVGMAASPAALEVVAAR------AWERRLRP----DSPVLVEERVTGQEISVESLT-CDGETTVLCQVRKEVVPGDYPIVRGH 228
                  69********************9887764333......45555554....6889***************98.99999888888999999999999*** PP

  ATP-grasp_4 100 vtsakvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnplrfagl 156
                   ++ +     ++a e ++++  ++lg+ +  +  El ++e+g+++ iE+n++  +++
   KIR64922.1 229 ALPFRH--ADADAAEAAVRTGLTALGVDRCFSNSELILTERGPVV-IEINARTPGDV 282
                  ***986..6778889999************************998.9****887776 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   1.1e-12   1.8e-09       9     158 ..     113     278 ..     106     281 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 1.1e-12
                  HHHTTT.S---.......-EESS--....SSSEEEEESS-------B--SS--TTE.................EEEE---SEEEEEEEE.E.SSSEEE CS
  ATP-grasp_3   9 kkLkeagvkvP...tkleaeeleee....ekklvvKprdGaggesvrvveekeeaeaaieeve..........lvqefieGkplSvsll.sdgekvlv 88 
                   +L++agv+ P    + + +e++e+      ++ vKp+d ag+ +v ++    ++e   +             lv e + G+++Sv+ l +dge+ ++
   KIR64922.1 113 SALRAAGVPQPrfrVCPSLAEVREAahdfGFPVCVKPVDQAGSIGVGMAASPAALEVVAARAWerrlrpdspvLVEERVTGQEISVESLtCDGETTVL 210
                  6788999999987734444444444444577999**************9999887755544337999*******************876256655555 PP

                  EEEEEEEEET....TEEEEEEES----HHHHHHHHHHHHHTTSTT--EEEEEEEEESS.SEEEEEEESS- CS
  ATP-grasp_3  89 lavnrqliekaekefvyaGnvtpietelkeevvelaeevvekleglaGyvGvDlvlkdeepyviEvNPRl 158
                    v ++++   ++  + +G   p+++ +++ ++++++  + +l   + +   +l+l++ +p+viE+N+R 
   KIR64922.1 211 CQVRKEVV--PGDYPIVRGHALPFRHADADAAEAAVRTGLTALGVDRCFSNSELILTERGPVVIEINART 278
                  55666666..5677899**************************655889999*****************7 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   9.7e-09   1.6e-05       3     109 ..     108     212 ..     106     227 .. 0.83
   2 !    5.3   0.0    0.0088        14     172     189 ..     261     278 ..     256     282 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 9.7e-09
                 HHHHHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---SEEEEEEEEE. CS
      GARS_A   3 KsfakdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleGeEvsllalv. 100
                 Ks  ++ l++ag+p +++++  + +e++e  +++++++  vK++  a+  gv +a+s + al++v+    +++     + v++Ee+++G+E+s+ +l+ 
  KIR64922.1 108 KSLQRSALRAAGVPQPRFRVCPSLAEVREAAHDFGFPV-CVKPVDQAGSIGVGMAASPA-ALEVVAARAWERRLR-PDSPVLVEERVTGQEISVESLTc 203
                 77889999******************************.9*************998765.666666555444444.799***************99964 PP

                 CTTEEEE-- CS
      GARS_A 101 dgktvkplp 109
                 dg+t++  +
  KIR64922.1 204 DGETTVLCQ 212
                 888776543 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0088
                 EEEEETTEEEEEEEESS- CS
      GARS_A 172 glmlvedgpkvlefnvRf 189
                 +l+l+e gp v+e+n+R 
  KIR64922.1 261 ELILTERGPVVIEINART 278
                 799*************95 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.8e-10   2.9e-07      28      98 ..     134     209 ..     115     225 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.8e-10
                      HHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHH....HTT-SCEEEEE--ESEEEEEEEEE.TSSCEE CS
  Dala_Dala_lig_C  28 lekveeelgypvfVKpareGSSvGvskveseeelkeaieea....fkydekvlvEeaiegreievavlg.neklev 98 
                      +++  + +g+pv VKp+ +  S+Gv  + s + l+   ++a    ++ d+ vlvEe + g+ei v  l  +++++v
       KIR64922.1 134 VREAAHDFGFPVCVKPVDQAGSIGVGMAASPAALEVVAARAwerrLRPDSPVLVEERVTGQEISVESLTcDGETTV 209
                      4456789************************99987665552211677*****************88774444443 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         1   1.6e+03       4      28 ..       5      29 ..       3      33 .. 0.81
   2 !   22.7   0.0   3.9e-08   6.4e-05       4     113 ..     184     308 ..     182     322 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1
  ATPgrasp_Ter  4 allvmeyLegpEySvDvlaekgevl 28
                   llv  + e+ E+ +  l ++g  l
    KIR64922.1  5 RLLVLGFVENREFAIRTLLRSGVRL 29
                  799***********99998877555 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 3.9e-08
  ATPgrasp_Ter   4 allvmeyLegpEySvDvlaekgevlaavpRrKe..kgglq........elekdeelielaerl.aeefgldglv.nvQvrededgpkLLEiNpRasG 88 
                   ++lv e   g+E+Sv  l+ +ge+ +  + rKe   g+++          ++d+++ e+a r   +++g+d ++ n  +  +e gp+++EiN+R  G
    KIR64922.1 184 PVLVEERVTGQEISVESLTCDGETTVLCQVRKEvvPGDYPivrghalpFRHADADAAEAAVRTgLTALGVDRCFsNSELILTERGPVVIEINARTPG 280
                   789******************9999988888887856555556665544455666666665543799****99758899999999************ PP

  ATPgrasp_Ter  89 Glgysa...laGvnlpylalklllglet 113
                    + + +   ++G +  ++al+++lg  +
    KIR64922.1 281 DVIMDMiwhASGFDPYRAALEMALGGRP 308
                   987765333579**999*****999533 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.5e-07   0.00025       2     135 ..     116     253 ..     115     278 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.5e-07
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC......GTTCEEEEE----SEEEEEEEEEETTC-EEE-- CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal......keekvivEefvpfekElsvlvvrsaeGetafyp 94 
                 +++g+p prf +  s +e++eaa+++g+pv vK         G  +  s++ le +++ +       + +v+vEe+v   +E+sv    + +Get+++ 
  KIR64922.1 116 RAAGVPQPRFRVCPSLAEVREAAHDFGFPVCVKPV-DQAGSIGVGMAASPAALEVVAARAwerrlrPDSPVLVEERVT-GQEISVESL-TCDGETTVLC 211
                 5789*****************************54.333345666777888777777666677799999********8.689997554.6899999888 PP

                 EEEEEEETTEEEEEEECE.E-SCHHHHHHHHHHHHHHHHHTS CS
   ATP-grasp  95 vvetvqedgilrlsvapa.evsekaqkkaeeiakkiveeLgg 135
                 +v +    g++ ++   a ++ ++++  ae+ +++ + +Lg+
  KIR64922.1 212 QVRKEVVPGDYPIVRGHAlPFRHADADAAEAAVRTGLTALGV 253
                 888888888888877655134444444555555555566655 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.7e-07   0.00061       6     101 ..     112     202 ..     108     227 .. 0.80
   2 ?   -1.8   0.0       1.1   1.8e+03     170     180 ..     268     278 ..     233     305 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.7e-07
                  HHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEEEE CS
  CPSase_L_D2   6 kealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlr 101
                  ++al++++vp  +   +   +l e+ ++a+++g+Pv +k+    G  G ++a + + l+ ++++a +       ++ vlve+ ++g +ei ve l 
   KIR64922.1 112 RSALRAAGVPQPRFRVC--PSLAEVREAAHDFGFPVCVKPVDQAGSIGVGMAASPAALEVVAARAWERRL--RPDSPVLVEERVTG-QEISVESLT 202
                  56677777776666666..8899*************************************9999998873..67888999998887.567666655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
                  EEEEEEEESS- CS
  CPSase_L_D2 170 eyyviEvNtRl 180
                    +viE+N+R 
   KIR64922.1 268 GPVVIEINART 278
                  45788999885 PP

>> ATPgrasp_N  ATP-grasp N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2     3e-06    0.0048      34      81 ..      49      95 ..      24      96 .. 0.78
   2 ?    1.4   0.0      0.29   4.7e+02      10      67 ..     207     263 ..     205     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3e-06
                EE-TTT-HHHHHHHHHHHHHHS--SEEE---GGGHHHHHHHHHHTT-S CS
  ATPgrasp_N 34 pldlaqdpdaaleavralsrerpvdGivtftdlavplvArlaeaLgLP 81
                + dl+ d+ ++ +av+ l + +   Gi+tf d  ++l+A+la ++  P
  KIR64922.1 49 VADLF-DERQVRAAVADLLDGEVPSGIMTFFDECMILAADLAAEFAVP 95
                45777.89**********************************999877 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.29
                 EEEEEEETTS----S-TT.EEEEEEE-TTT-HHHHHHHHHHHHHHS--SEEE---GGG CS
  ATPgrasp_N  10 kvvlvdeedewapeelaelvekfipldlaqdpdaaleavralsrerpvdGivtftdla 67 
                 ++vl + ++e+ p + + ++ +++p   a d daa +avr+  ++ +vd  ++ ++l 
  KIR64922.1 207 TTVLCQVRKEVVPGDYPIVRGHALPFRHA-DADAAEAAVRTGLTALGVDRCFSNSELI 263
                 56777788888888888888888998888.899999***9999999999998888875 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.5   5.7e+03      63      85 ..      45      66 ..      36      67 .. 0.71
   2 ?   12.8   0.0   3.6e-05     0.059      16      54 ..     112     150 ..     104     155 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.5
  ATP-grasp_5 63 dvgGvrlnlkdaeevraaaeeil 85
                 d+  v+  l d+++vraa++++l
   KIR64922.1 45 DYRSVAD-LFDERQVRAAVADLL 66
                 5555554.889999999998875 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.6e-05
  ATP-grasp_5  16 kelleaygipvvetrlassaeeaveaaeeigypvvlKiv 54 
                  ++ l+a g+p +++r++ s +e+ eaa  +g+pv +K v
   KIR64922.1 112 RSALRAAGVPQPRFRVCPSLAEVREAAHDFGFPVCVKPV 150
                  56799*******************************965 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.99   1.6e+03      51      77 ..     133     159 ..     105     170 .. 0.68
   2 ?   10.5   0.0   0.00016      0.27     240     273 ..     246     286 ..     233     297 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.99
  ATPgrasp_ST  51 eleafvkeleeg..vviKpakgsgGkGil 77 
                  e+++  +++  g  v++Kp+++ g  G+ 
   KIR64922.1 133 EVREAAHDF--GfpVCVKPVDQAGSIGVG 159
                  444555555..344999999987766664 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00016
  ATPgrasp_ST 240 pglgylGwDiv......ldeekgplllElNar.pglaivqi 273
                  +gl +lG+D +      + +e+gp+++E+Nar pg  i+++
   KIR64922.1 246 TGLTALGVDRCfsnselILTERGPVVIEINARtPGDVIMDM 286
                  56667777755333333566778*********999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2906.22
//
Query:       KIR64923.1  [L=130]
Description: tautomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-26   91.6   0.0      3e-25   88.1   0.0    1.9  2  Tautomerase_2  Tautomerase enzyme
    6.1e-13   48.5   0.0    3.5e-05   23.6   0.0    2.1  2  Tautomerase    Tautomerase enzyme


Domain annotation for each model (and alignments):
>> Tautomerase_2  Tautomerase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00047       4.2      31      74 ..       3      46 ..       1      48 [. 0.90
   2 !   88.1   0.0   3.3e-29     3e-25       1      82 []      38     119 ..      38     119 .. 0.99

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00047
                   EEEEEEES---HHHHHHHHHHHHHHHHHHH---GGGEEEEEEEE CS
  Tautomerase_2 31 vieitlsegRseeqKkaLyralaerlaaklgirpeDvfivlven 74
                   ++ei++ +  ++++ +aL  a+ + + ++++++++D+f vl  n
     KIR64923.1  3 LVEINVLQRCDPKTLQALGDAVHQAMTETVDVPADDLFQVLRRN 46
                   689999988899999***********************998877 PP

  == domain 2  score: 88.1 bits;  conditional E-value: 3.3e-29
                    --EEEEEEE-GGGEE--T.....TS-TT-EEEEEEEES---HHHHHHHHHHHHHHHHHHH---GGGEEEEEEEE-GGGEEET CS
  Tautomerase_2   1 drfqiitehepeelviddtylgieRsddlvvieitlsegRseeqKkaLyralaerlaaklgirpeDvfivlvenpkedWSfg 82 
                    d fq++ + +++ l++d  ylgi+R+dd+v+++it++ gRs+eqK+aLyr+++e  a+++ ++p++v+i++ven+  dWSfg
     KIR64923.1  38 DLFQVLRRNDDGMLRYDAGYLGIRRDDDVVFVRITMRGGRSVEQKRALYRRVVELAAERAAVEPRNVLITIVENELCDWSFG 119
                    78*******************************************************************************8 PP

>> Tautomerase  Tautomerase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   3.9e-09   3.5e-05       1      43 [.       2      44 ..       2      53 .. 0.93
   2 !   23.1   0.0   5.8e-09   5.2e-05       2      46 ..      68     112 ..      68     124 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 3.9e-09
                 -EEEEEESTCS-HHHHHHHHHHHHHHHHHHHTS-GGG-EEEEE CS
  Tautomerase  1 PfvnIklvegrsaeqKaeLaervTealvealgaprsaivVvie 43
                 P+v+I+++++ ++  +++L ++v++a+ e++++p ++ ++v++
   KIR64923.1  2 PLVEINVLQRCDPKTLQALGDAVHQAMTETVDVPADDLFQVLR 44
                 9*************************************99987 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 5.8e-09
                  EEEEEESTCS-HHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEEE- CS
  Tautomerase   2 fvnIklvegrsaeqKaeLaervTealvealgaprsaivVvieEvp 46 
                  fv+I + +grs eqK++L +rv e+++e   + + ++ + i E +
   KIR64923.1  68 FVRITMRGGRSVEQKRALYRRVVELAAERAAVEPRNVLITIVENE 112
                  9**************************998887777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 828.79
//
Query:       KIR64924.1  [L=512]
Description: hypothetical protein TK50_05015 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-06   25.0   0.0      9e-06   24.5   0.0    1.4  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     5e-10     9e-06      43     179 ..     125     273 ..     102     487 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 5e-10
                      S.-SBTTT--HHHHHHHHHH.HHHHT-...SEEEEESSHHHHHHHH....HHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSH CS
  Cys_Met_Meta_PP  43 g.yeYsRsgnptrsvleeri.aaLegg...eaalavssGmaAiaaa....ilallkaGdeivvsddlYggtqrllkkvlkklgievkfvdtsdl 127
                      g   Y R+  p  + le++  ++L  g    a++++ssGm+A +a+    ++  l+aGd+i  +   Y  ++++l+k+    g++v+ v+++ +
       KIR64924.1 125 GlLGYRRVHHPILTRLEQQYrCELGYGqlgPACFLTSSGMGAFTAVenwlVRDRLRAGDRIGYMARTYFESRDQLSKL---KGVTVQGVEVERA 215
                      2256************9986478876644479**********976523325667789***********9999988876...599*******999 PP

                      HHHHHHCCT.TEEEEEEESS-TT.TT----HHHHHH....HHHHTT-EEEEEGTTTHT CS
  Cys_Met_Meta_PP 128 eelekaike.ntklvylEtptnp.llkvvDiekiak....lakkagvlvvvDntfasp 179
                      +++ + +++ +  ++++E + n     ++D+ ++++    l  ++++ vv+D +++++
       KIR64924.1 216 ADVVEYVRSaRPAAFFVEPINNEdETTLIDVVEMLRslgrLPLEQDLFVVLDTSMSAG 273
                      999999888799********99624667787776651111444667999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3649.07
//
Query:       KIR64925.1  [L=331]
Description: hypothetical protein TK50_05030 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-17   64.1   5.3    2.6e-17   63.6   5.3    1.2  1  APH       Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.22   11.1   0.0       0.37   10.4   0.0    1.3  1  RIO1      RIO1 family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   5.3   2.9e-21   2.6e-17       7     230 ..      43     268 ..      38     278 .. 0.79

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 2.9e-21
                 -.SSCEEEEEEETT--EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-C..TTBS-EEETTE...EEEEEE----EE-SSHHHHHHHHHHHHHHHH CS
         APH   7 ggasnrtylvttpagryvlrrnpparaaeeirrevallrlLakagvpvPevl..agdtddeeigl...lfalieyvpgrsllrklsaaqlpellealge 100
                 +g+++ +  + t++gry ++++ ++r+ e + r+v+llr + +agv+ P+++   g  d  +++    l +++  ++g ++ +       p++l++l++
  KIR64925.1  43 SGYDDCNLTLSTTRGRYHVKIFTTERPRELTLRYVDLLRCVIAAGVSHPALHpaGG-ADLLHHRAsgnLLVVMDHLDGGTFFD-RGGHPNPAQLADLIR 139
                 78888889999999********************************6566662143.33333333689***************.5566899******** PP

                 HHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEE CS
         APH 101 flaalhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedaglg 199
                   + +h+++ +++pl d+ a+   +    e    +ll++e +  + e+ e ++   +a+lp    + l+HgDl   N++ +  d+ v +v+Df  a   
  KIR64925.1 140 QVRLVHSIERDFAPLHDWWATPNMPVLAHEVL--PLLPPEDQRTVTEALESFATIDLANLP----RALVHGDLTKANVVPT-SDTTV-AVLDFAVANRY 230
                 ********999999988776655554444444..677777777455555547777777777....9***************.55666.8********** PP

                 ECCHHHHCCH...HHCSCHCCCHCHHHHHHHHC....S CS
         APH 200 pplyDlavll...rswtseldpeflaallraye....q 230
                 p++++l + +   ++ + +  +e la+l r+y+     
  KIR64925.1 231 PRIHELSMIVvnlMHGDPRDLDERLADLTRRYGspplT 268
                 ********997777777888899999999999855442 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   4.1e-05      0.37     124     150 ..     198     225 ..     167     241 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4.1e-05
                 TSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1 124 eaglvHaDLSeyNvlvded.kvviIDvs 150
                    lvH+DL + Nv+ ++d  v ++D++
  KIR64925.1 198 PRALVHGDLTKANVVPTSDtTVAVLDFA 225
                 5689***************99999**96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2355.93
//
Query:       KIR64926.1  [L=336]
Description: hypothetical protein TK50_05035 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-27   96.6   0.3    1.6e-27   96.3   0.3    1.1  1  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil
  ------ inclusion threshold ------
      0.056   14.0   0.0       0.16   12.5   0.0    1.8  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.3   1.8e-31   1.6e-27      20     316 ..      23     318 ..      11     320 .. 0.86

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 1.8e-31
                      CHHHHHHHHHHHHCC-CE----EEEEECCGTEEEEEEEEEETTTT.EEEEEEEEEETTTCCCTSSSEEEEEEEE-TTT--EEEEEE-HHHHHHH CS
  OCD_Mu_crystall  20 lakaveeafrrlasgkvkkpprvalevkdsrgelevmpaylagre.llgvKlvnshpenkksglptvtalvvLndpetGvplalmdatlltalR 112
                      +++ v +a+ + + g+    p   l +++ + ++ +  a+       +g+K++ s+pen ++g ++  a++vLnd etG p+a +++  ++a R
       KIR64926.1  23 VLQTVADAYVAHETGATTLGPSAFLRFPERHARIIALSAHVRVPTqRVGMKWISSFPENLARGEKRASAVIVLNDHETGRPVACLEGARISAAR 116
                      56788999999999988888988888888888888888888765559*********************************************** PP

                      HHHHHHHHHHHH....S-TT--EEEEE--SHHHHHHHHHH.CCCS--SEEEEE-SSHHHHHHHHHHCCS.CTT-EEECSCHHHHTTSSEEEE-- CS
  OCD_Mu_crystall 113 TaAvsavaakyL....arkdasvlaiiGaGvqaetqleal.kavldikevriydrdeeaaekfaenlqefefevsackseeeavegadivvtvT 201
                      T+A++avaa+      a +  ++++++G+G  a + le l +  +++ e+   d d  +a++++ ++++  ++  a    + ++ +ad+vv +T
       KIR64926.1 117 TGAAAAVAARAVlgagATERPRRVGFVGCGPIASSVLEYLlQTPIEVGEIHCHDADSATADAMVGQARR-LVAAPARRVGKAEALDADVVVLAT 209
                      **********8833334555579************99976155688**********************8.445555555667788********* PP

                      --SS-SB-.GGGS-TT-EEEE-S--STT--SB-HHHHHCCEEEESHHHHHHHCCCCHCHHHTTSSTCGGEEEEHHHHHCTSS-..-STTSEEEE CS
  OCD_Mu_crystall 202 aakapilk.aewvkpGahinavgadapgkteLdddilkradifvdseaqareeGeiqvaiekgvlaedakvaelgeviaGkkpGRtsdeeitlf 294
                       a +p +  +  + pG+ ++ +       ++L +++++ a+ +vd+ a   +     +  e++  ++  + a++g+ + G+ +   +d+  ++ 
       KIR64926.1 210 NALRPHIGpETTLRPGQVVLNIS-----LRDLAPEVILDAQNVVDDVAHCLQADTSPHLAEQQAGSRGFISATIGQLLLGEAE--LDDRRPVVV 296
                      ****87761568********986.....689*************988877776666665668888999999************..999****** PP

                      E----HHHHHHHHHHHHHHHCC CS
  OCD_Mu_crystall 295 dsvGlaveDvaaaklvyeraee 316
                      +  Gl+v Dva+a  v +r+++
       KIR64926.1 297 SPFGLGVLDVAVAGTVLDRVLA 318
                      ******************9976 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.8e-05      0.16       1      69 [.     139     209 ..     139     221 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.8e-05
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC....-EEECECHHHHHHH-SEEEE-S CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg....vkvtavdneeaaeeadvvvlav 69 
                    ++g++G+G +++++++ ll++  +  ei    + +  +a+++  ++     + +  v ++ea++ advvvla 
     KIR64926.1 139 RVGFVGCGPIASSVLEYLLQTPIEVGEIH-CHDADSATADAMVGQARrlvaAPARRVGKAEALD-ADVVVLAT 209
                    69*******************85555555.3344444455555555488776677777899997.******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2135.39
//
Query:       KIR64927.1  [L=779]
Description: hypothetical protein TK50_05045 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.065   12.8   0.1       0.36   10.4   0.1    2.2  2  STAT1_TAZ2bind  STAT1 TAZ2 binding domain
       0.29   11.7   5.7       0.42   11.2   0.5    2.8  2  HEPN_SAV_6107   SAV_6107-like HEPN


Domain annotation for each model (and alignments):
>> STAT1_TAZ2bind  STAT1 TAZ2 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1     4e-05      0.36      13      22 ..     122     131 ..     115     132 .. 0.85
   2 ?   -1.4   0.0       0.2   1.8e+03      18      25 .]     534     541 ..     534     541 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4e-05
  STAT1_TAZ2bind  13 SPedYgELeR 22 
                     SP++Y+EL+R
      KIR64927.1 122 SPDVYDELRR 131
                     9********9 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.2
  STAT1_TAZ2bind  18 gELeRlVg 25 
                     +EL R+V+
      KIR64927.1 534 DELHRIVT 541
                     7*****96 PP

>> HEPN_SAV_6107  SAV_6107-like HEPN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   4.7e-05      0.42      45      87 ..      65     106 ..      31     118 .. 0.79
   2 ?    1.9   0.6     0.036   3.2e+02       7      39 ..     205     238 ..     201     287 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.7e-05
  HEPN_SAV_6107  45 lLaevaPelaewaalFaagaarraaieaGieravtareaddll 87 
                    + ae+aP la+wa+ ++a ++  a++e+ ++ a+ +re + l+
     KIR64927.1  65 RPAEAAPALAQWADALDAFSTVEARVEQELH-AAASRELEILM 106
                    55799**********************9997.45555555555 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.036
  HEPN_SAV_6107   7 paeryaaahlaAlraAaAvLaargrpe.rrrrrp 39 
                    +++r  +a+ aA     AvL  +g+ +   rr +
     KIR64927.1 205 ANRRTFMAYWAATAVGNAVLTENGTAHtIPRRVI 238
                    6788899**************9998875455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 4932.68
//
Query:       KIR64928.1  [L=473]
Description: hypothetical protein TK50_05050 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-23   81.9   0.0    7.8e-23   81.2   0.0    1.6  1  Aminotran_1_2   Aminotransferase class I and II
     0.0062   15.4   0.0      0.014   14.2   0.0    1.6  1  Aminotran_MocR  Alanine-glyoxylate amino-transferase
  ------ inclusion threshold ------
       0.12   11.3   0.0       0.24   10.3   0.0    1.4  1  Aminotran_5     Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   1.3e-26   7.8e-23       4     256 ..      28     278 ..      25     445 .. 0.80

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 1.3e-26
                    EESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHC..TCTTCHTTGGEGEEEESHHHHHHHHHHHHHH..HTTT-E CS
  Aminotran_1_2   4 inLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflg..rseklklkreaavvvgsGagaliealifllk..lnpgde 95 
                    +nL+s+ + +  + + ++ v+ a+++       ++ y  + g+   + a+a +    +   +++ +e +v+v+ Ga+a+i++++++l   + pg +
     KIR64928.1  28 VNLSSGVNFQQPAWEFVDFVLGAARD----PLLWHDYDGPNGHVLGRAAVAAYETrrSAGLTTIGPE-NVIVTAGASAGIALAARVLAarVRPGLQ 118
                    56666666554333444444444433....666889999999999******9999844457778888.*****************99644344433 PP

                    ...EEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEE CS
  Aminotran_1_2  96 ...ilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDe 188
                        ++p+pt++ +  +l  +g++v ++    +e +  ++e+l +   +ap++   t vi+v++ +NPtG  ++++el++l+  a+ + ++++ D 
     KIR64928.1 119 rphAVLPAPTFPLVGAALCDAGFTVSQVVSCLPERWLPTVEELTA---SAPPQ---TTVIYVNTFNNPTGERYSEAELRQLAVWARDRSVVILHDV 208
                    44499*******************887775557999999999888...55555...55************************************** PP

                    TTTTCBSSSS..HTHHHHGGSTTSTT.EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHH CS
  Aminotran_1_2 189 aYagfvfgsl..davatranveeepn.llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssll 256
                    + ++++ + +     + +a  e + + +l+vgslsK+ +l+G+R+++++g+a   ++++ +   +  ss++
     KIR64928.1 209 VSSDLAPEGHlpHLPS-IAAKEGYADgVLTVGSLSKSRALPGFRIAWLIGDAQTMQAAAAANELIAPSSPG 278
                    ********88643333.5555555556************************96666655555444433332 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.3e-06     0.014     161     201 ..     156     196 ..      82     247 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.3e-06
                     HHHHHHHHC-TTEEEEEE-SSS-TTT-----HHHHHHHHT- CS
  Aminotran_MocR 161 daveklvaedasvkGilavpkysnptGetiseevarrlaal 201
                      +ve+l+a+ +    ++ v ++ nptGe +se   r+la  
      KIR64928.1 156 PTVEELTASAPPQTTVIYVNTFNNPTGERYSEAELRQLAVW 196
                     579*********************************99854 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0     4e-05      0.24      35     179 ..      66     211 ..      59     216 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4e-05
                  SHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEE..EBETTSCBEGG CS
  Aminotran_5  35 hhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvi..pldeegeldld 130
                  h lg  a +a+e+ r+   + i+    e++i+t G++ +i+l+a+ la++++pg +    ++      +  ++l+ + g++v  +   l e+++ +++
   KIR64928.1  66 HVLGRAAVAAYETRRSAGLTTIGP---ENVIVTAGASAGIALAARVLAARVRPGLQRPHAVLPAPTFPLVGAALC-DAGFTVSQVvsCLPERWLPTVE 159
                  566666666666666655444444...56******************9999999988888888887777788888.6688887654468899****** PP

                  GHHHH--TTEEEEEEESBETTTTE...B--HHHHHHHHHHTT-EEEEE-TTT CS
  Aminotran_5 131 elekllnektklvaithvsnvtGt...iqpveeigklakkkgalvlvDaaqa 179
                  el++   ++t +++++  +n tG      ++ +++  a+++ +++l D +++
   KIR64928.1 160 ELTASAPPQTTVIYVNTFNNPTGErysEAELRQLAVWARDRSVVILHDVVSS 211
                  ***********************94334566666777888999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3080.36
//
Query:       KIR64929.1  [L=383]
Description: hypothetical protein TK50_05065 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-26   91.9  39.4    4.9e-14   52.0  10.0    2.0  2  MFS_1       Major Facilitator Superfamily
    4.6e-23   81.4  29.5    5.7e-23   81.1  29.5    1.1  1  MFS_3       Transmembrane secretion effector
    1.1e-08   34.4   5.4    1.6e-08   33.9   5.4    1.2  1  MFS_1_like  MFS_1 like family
     0.0035   16.3  12.1     0.0035   16.3  12.1    2.1  2  Sugar_tr    Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0  10.0   1.1e-17   4.9e-14      30     217 ..       6     200 ..       2     204 .. 0.79
   2 !   45.1  25.0   1.4e-15   6.1e-12       2     172 ..     196     362 ..     194     378 .. 0.87

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 1.1e-17
       MFS_1  30 spseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllll..fa..sslwlllvlrvlqGlgagalfpagaaliadwfpkeergrai 123
                 +p++i  l+++ ++  +++ +++G+++d + +rr +l ++l+  ++ + +++  +a  + lw+l+++ ++ Glg++++ +a+++++ ++++ e+ +ra+
  KIR64929.1   6 DPTAIAGLAAMEFVPWILFGPVAGAVVDFVNHRRlMLAVSLVRALVLASVAIsiYAgtAELWWLYAAALVIGLGECLYDTASQVAVPQVVSSENLPRAN 104
                 5677777888889999******************66666666666664444445557899*************************************** PP

       MFS_1 124 gllsagfslGa.ilgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp....awkallkdpvlw.illial 216
                 +lls+++      +gp lg+ l + +  +++f+++ ++++l+     ll+   p  ++++++ +    ++++p+++    +++ +++dpvl  ++l+++
  KIR64929.1 105 SLLSTAWITCNeFVGPFLGARLFEVA-RTLPFVLHSAALFLSSA---LLVGKYPGYSGTQRSDDGPPPKVRRPMAElladGFRVVRRDPVLRsVILAGA 199
                 *****9999999***********665.6899***********88...677666666666666555433355555558889*********8863333333 PP

       MFS_1 217 l 217
                 +
  KIR64929.1 200 A 200
                 3 PP

  == domain 2  score: 45.1 bits;  conditional E-value: 1.4e-15
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 l +a+++a++++ +++++  +++ed g+ +s++g+ll++ ++g +v+ l++ r ++r+G  + l+++ ++ +++ + l++a+s +++ +l vl++++ +
  KIR64929.1 196 LAGAAVAAADSAWYAVLVI-YVTEDIGAPASVFGILLAVSSIGGIVGGLVMERAGNRIGDAKALVAATAGIVASQVGLVLATSEFVVGALLVLSSMALA 293
                 4566667777777777776.******************************************999999999999666667555558999999******* PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll 172
                 + + a++++  +++p++  gr++gl  + +sl+a++ ++lgg++a+ +  ra+f++  ++ l   +   + +
  KIR64929.1 294 VWNIAAVTIRQRVAPPDTLGRVMGLSRSITSLAAAVSAVLGGVVAATVDVRAAFLLGIPFVLGTSI---WAV 362
                 ********************************************************9999998877...444 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1  29.5   1.3e-26   5.7e-23      42     407 ..       5     377 ..       1     382 [. 0.83

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 1.3e-26
       MFS_3  42 asplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaA 140
                   p+++A + a   +P +l+  +aGa+ D +++R+++lav l+ alv + ++++ + g  + w l a +l+ig+G  l d a q +v+++v+ +++p A
  KIR64929.1   5 RDPTAIAGLAAMEFVPWILFGPVAGAVVDFVNHRRLMLAVSLVRALVLASVAISIYAGTAELWWLYAAALVIGLGECLYDTASQVAVPQVVSSENLPRA 103
                 567778888888899************************************************************************************ PP

       MFS_3 141 vaLnsvg.iniaRsvGPAlgGvlvaavGaalafavnalsylalivall........rwkrevrksslprEkllealraglRftaasreikavlvRaalF 230
                   L s   i     vGP lg  l  ++  +l f +++ + +   + l+          + +  + +  r ++ e l +g+R ++  + +++v++ +a+ 
  KIR64929.1 104 NSLLSTAwITCNEFVGPFLGARLFEVA-RTLPFVLHSAALFLSSALLVgkypgysgTQRSDDGPPPKVRRPMAELLADGFRVVRRDPVLRSVILAGAAV 201
                 99998872566678*****99887654.4455555554433322222211111111223333344455678889999********************** PP

       MFS_3 231 glsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalasslwvavlvlllgGaaWitalstln 329
                  ++ sa +a+L + + + +++ a+v+Gill+   +G i+g+l++ r  +r++  + +  a++++ +  + l la+s +v+   l+l+    ++++    
  KIR64929.1 202 AAADSAWYAVLVIYVTEDIGAPASVFGILLAVSSIGGIVGGLVMERAGNRIGDAKALVAATAGIVASQVGLVLATSEFVVGALLVLSS-MALAVWNIAA 299
                 ****************************************************999999999999999999999999988776666655.4467777777 PP

       MFS_3 330 vav.qlavPrWvvgRalavYltvlaGglaaGsllWGavaealsvtlaLlaaaaalllaaaillllklpeleasdlapsn 407
                 v++ q + P    gR++ +   +++ + a  ++l G+va ++ v+ a l++ + ++l++ i  + +l ++ +++ +p +
  KIR64929.1 300 VTIrQRVAPPDTLGRVMGLSRSITSLAAAVSAVLGGVVAATVDVRAAFLLG-IPFVLGTSIWAVRRLGARATQAIEPDD 377
                 776478889999*********************************999875.667777777777777777766666665 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   5.4   3.5e-12   1.6e-08     156     383 ..      19     347 ..      18     349 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 3.5e-12
  MFS_1_like 156 vGyaifafitGilidhysvnllpysallyvlaallvisllv..vlilnetekesklkvtksl..................................... 215
                 v +++f ++ G+++d++++  l +  ++ ++ al+++s+++   +   e ++  + +++  l                                     
  KIR64929.1  19 VPWILFGPVAGAVVDFVNHRRLML--AVSLVRALVLASVAIsiYAGTAELWWLYAAALVIGLgeclydtasqvavpqvvssenlpransllstawitcn 115
                 669****************87764..4444444444444330033466788888888886669999********************************* PP

  MFS_1_like 216 ................................................................qvllnilknpeviifllvalilgmswgiienFlfl 250
                                                                                 + +  + ++p +  ++l+ + + ++ ++ ++ l +
  KIR64929.1 116 efvgpflgarlfevartlpfvlhsaalflssallvgkypgysgtqrsddgpppkvrrpmaellaDGFRVVRRDPVLRSVILAGAAVAAADSAWYAVLVI 214
                 ***************************************************************76666677788888999999**************** PP

  MFS_1_like 251 YL.kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapkslea 348
                 Y  ++ ga+ ++ G+l+a+  ++ i+  +++e+  +++G  k l++a   +++  +++ + ++  +v  + vL+++++++   aav+  +++ap+ + +
  KIR64929.1 215 YVtEDIGAPASVFGILLAVSSIGGIVGGLVMERAGNRIGDAKALVAATAGIVASQVGLVLATSEFVVGALLVLSSMALAVWNIAAVTIRQRVAPPDTLG 313
                 *************************************************999999999999************************************** PP

  MFS_1_like 349 tgqgllsglyfglGralGsliGGllwdlksaiflF 383
                 +++gl  ++  +l  a+ +++GG++  + + + +F
  KIR64929.1 314 RVMGLSRSI-TSLAAAVSAVLGGVVAATVDVRAAF 347
                 *****9999.89************98888887777 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   4.0     0.016        73     303     409 ..      24     130 ..      11     150 .. 0.83
   2 !   16.3  12.1   7.8e-07    0.0035      44     181 ..     223     356 ..     192     365 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHT.TTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHH CS
    Sugar_tr 303 atfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfal.gwgpvpwvlvsElfpqsvRskalaiavavnwlanf 400
                 +  va  +vd +  R+l+l  +++ a++++ ++i  ++++a+  ++ ++a   i l  +l+ + +   vp v++sE  p +   + +a  ++  ++  f
  KIR64929.1  24 FGPVAGAVVDFVNHRRLMLAVSLVRALVLASVAISIYAGTAEL-WWLYAAALVIGLGECLYDTaSQVAVPQVVSSENLPRANSLLSTAWITCNEFVGPF 121
                 5566778999999999999999999999999999999999995.9999999999999999975256688999999999988888888888888888888 PP

                 HHHHHHHHH CS
    Sugar_tr 401 lisllfpii 409
                 l + lf ++
  KIR64929.1 122 LGARLFEVA 130
                 888888765 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 7.8e-07
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                  ++  g+++++ ++G+i+G+l++  +g+r+G  k+l++a++  v+++v  ++a++++ v +l    vl+ +++ + ++ + +  + +Ap++  g++++l
  KIR64929.1 223 PASVFGILLAVSSIGGIVGGLVMERAGNRIGDAKALVAATAGIVASQVGLVLATSEFVVGAL---LVLSSMALAVWNIAAVTIRQRVAPPDTLGRVMGL 318
                 567899************************************************55555555...579******************************* PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHH CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglqlvpa 181
                   + +++   v+a++g +++ t + ++  +llg+ +v+ 
  KIR64929.1 319 SRSITSLAAAVSAVLGGVVAATVD-VRAAFLLGIPFVLG 356
                 ****************99988888.56666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 2591.27
//
Query:       KIR64930.1  [L=449]
Description: hypothetical protein TK50_05070 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-05   22.9   0.0    8.6e-05   21.6   0.0    1.6  1  CP_ATPgrasp_2  Circularly permuted ATP-grasp type 2
     0.0052   15.8   0.1      0.012   14.6   0.1    1.8  1  CP_ATPgrasp_1  A circularly permuted ATPgrasp


Domain annotation for each model (and alignments):
>> CP_ATPgrasp_2  Circularly permuted ATP-grasp type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   9.6e-09   8.6e-05     127     359 ..     163     415 ..      99     429 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 9.6e-09
                    HHHHHHHHHTS-..-S...S..-EEEE---SSSTTHHHHHHHHHHH...T-EEE..-GGGEEE-SS-EEE--TT--EEE-EEEE-S-GGGS-TTTS CS
  CP_ATPgrasp_2 127 ealreaLaalap.akaeepr..tivlLtpGpynsayfEhafLAryl...gveLv..egsDLtvrdgrvylktleglkrVdviyrrvdddfldplel 214
                    +   +aLaa+a    + ++r    ++ +p  +   +  h+ LAr+    g+ +v  + + L  rdg++y +      +Vd + r++  +  d le 
     KIR64930.1 163 ALADAALAACARlG-TASSRpvLAIVDSPTYEPLFHLAHRTLARHYaarGFRVVirHQRRLSLRDGHLYADD----THVDLVHRQFIIE--DMLE- 250
                    55555666666642.222332234444555555556677777775423355554226778999999999877....5999999985433..2222. PP

                    -TT-SSS-TTHHHHHHTTS-EEES-TTTHHHHSTTTGGGHHHHHHH..HH.-S--SSEE-..--EETTSHHHHHHH.....HHSG......GGEEE CS
  CP_ATPgrasp_2 215 radsllGvpgLleavragnvavaNalGsgvaddkalyaflpaliry..ll.geellLpnv..ptwwcgeeealeev.....lenl......delvv 294
                      + +  vp  +ea+ragnva++     +++  k+++a l a +++  l  +   l++ v  +t+++ +++ ++ +      ++l      +e+vv
     KIR64930.1 251 --EPAAAVP-VFEAARAGNVAIVTGFREEFLGGKGMLAILRAAAERgvLPaDDARLMRAVvpETYLLHRPAGRAFAgsgdgHDRLrhpgaaREWVV 343
                    ..3344555.89**************************999998863233244445555455799999999887762222223335557779**** PP

                    EE--------EEEGGG--HHHHHHHHHHHHHSGGGEEEEE-----EE..EEEE.....EEEEEEEEE-EEE. CS
  CP_ATPgrasp_2 295 kpvdesggegvligpelsaaeleelrarikanperyvaqevvelsta..ptlk.....leprhvdlRvFvla 359
                    kp  +s+g +v++gp++++++ ++  a+   + +++vaq++v+   +  p l+     ++ +++   +Fv +
     KIR64930.1 344 KPSIGSSGGEVTLGPAVNDETFQAAVAAATVSNQAWVAQRYVPSDLVdlPFLQgqeltFRGCQIHPSFFVTQ 415
                    ****************************************99755441166633342233333333344444 PP

>> CP_ATPgrasp_1  A circularly permuted ATPgrasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.4e-06     0.012     222     332 .]     256     382 ..     101     382 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-06
  CP_ATPgrasp_1 222 pGlleayraGnvtlanavGsGvaddkavyafvPeliey.yL..geepilknv..etyrceeaddlk........evLdr...lselvvkevegsgg 301
                    + ++ea+raGnv+++ +  + ++  k+++a +   +e+  L  +++ ++++v  ety +++++ ++        + L +    +e vvk++ gs g
     KIR64930.1 256 VPVFEAARAGNVAIVTGFREEFLGGKGMLAILRAAAERgVLpaDDARLMRAVvpETYLLHRPAGRAfagsgdghDRLRHpgaAREWVVKPSIGSSG 351
                    44799999999999999999999999999988877765233435566666665567877777655422222111344432224689********** PP

  CP_ATPgrasp_1 302 ygiviGptaskaelaelarrilaepeqyiaq 332
                     ++++Gp+++++  ++++++ + +++ ++aq
     KIR64930.1 352 GEVTLGPAVNDETFQAAVAAATVSNQAWVAQ 382
                    ***********999999999999999***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3031.80
//
Query:       KIR64931.1  [L=412]
Description: hypothetical protein TK50_05075 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-22   78.4   0.0    8.4e-20   71.0   0.0    2.6  3  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0   0.00077        14      44     118 ..       5      79 ..       3      92 .. 0.81
   2 !    0.6   0.0    0.0098   1.8e+02     238     286 ..     190     234 ..     172     254 .. 0.83
   3 !   71.0   0.0   4.7e-24   8.4e-20     297     418 ..     228     347 ..     214     348 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.00077
                 EEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSH....STTTHHHHH CS
        p450  44 kpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsf....gklsleelv 118
                 +p+ vls++ +v+e+l ++  +  + +d   ++   +  ++  v++ ng++++  Rr+ ++ ++      + ++l ++v
  KIR64931.1   5 QPSLVLSTYRDVQEALSNG--ALTRSIDAERFER--GNILEGVVMMLNGSQHRDRRRIENTLFRREvlteYEQKLFPVV 79 
                 68899**************..6889899999997..7788888999999*********999999885553333555555 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.0098
                 SCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 238 rrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaL 286
                 +rd+l  ll  +  + +   l+d ++  ++   l a+ dT++ +l+  +
  KIR64931.1 190 PRDLLTTLLRHR--EAH--GLDDGQVIRETAFYLEASADTSAQALTNSI 234
                 799999999997..444..5***********************998765 PP

  == domain 3  score: 71.0 bits;  conditional E-value: 4.7e-24
                 HHHHHHHHHHC.CTTT..T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-T CS
        p450 297 eklreEidevl.gdkr..eptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevf.pnPeeFdpeRFlde 391
                 ++l++ id v+ + +r  +   +  q+  +++ +++E+ Rl+p+vp ++ R++++d+v++g ++p++t v + ++a +rd +vf p ++eFdp R  ++
  KIR64931.1 228 QALTNSIDLVFdHARRdpSALSRLTQDTFLVQRFVHEAVRLRPTVP-RIRRRTLTDTVLNGTVVPADTLVELDTTAANRDVDVFgPSADEFDPWREVPA 325
                 6777778888854444433334566788899***************.**********************************************998888 PP

                 TSCTESSCTT--TTEEGGGS-TTHHHH CS
        p450 392 kgnskrksfaflPFGaGpRnCiGerlA 418
                 ++     + +  +FG G+++CiG++lA
  KIR64931.1 326 TV-----PRYAHAFGGGVHSCIGRNLA 347
                 66.....88999**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2989.66
//
Query:       KIR64932.1  [L=135]
Description: hypothetical protein TK50_05090 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.063   13.7   0.9       0.13   12.7   0.4    1.7  2  DUF4140   N-terminal domain of unknown function (DUF4140)


Domain annotation for each model (and alignments):
>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   7.4e-06      0.13      62      96 ..      15      50 ..       3      52 .. 0.74
   2 ?   -1.4   0.0      0.19   3.3e+03      67      75 ..     104     112 ..      72     123 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.4e-06
     DUF4140 62 aeeee.lkalraeleeledelaaledelaaaearla 96
                a + +  ++lr+++++l+++la++e elaa+ +++ 
  KIR64932.1 15 ATAGQtADRLREQITALTTDLARVEGELAALATTRT 50
                22223378**********************988765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.19
     DUF4140  67 lkalraele 75 
                 ++++ra+l+
  KIR64932.1 104 VESIRAKLK 112
                 444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1192.43
//
Query:       KIR64933.1  [L=276]
Description: hypothetical protein TK50_05095 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-23   83.3   0.4    2.1e-23   82.3   0.4    1.5  1  DUF4096      Putative transposase of IS4/5 family (DUF4096)
      2e-11   43.9   1.4    1.6e-10   41.0   1.4    2.1  1  DDE_Tnp_1    Transposase DDE domain
      0.001   19.4   0.0      0.002   18.4   0.0    1.6  1  DDE_Tnp_1_2  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DUF4096  Putative transposase of IS4/5 family (DUF4096)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.4   3.5e-27   2.1e-23       1      75 []      11      89 ..      11      89 .. 0.98

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 3.5e-27
     DUF4096  1 LtDeqWellepllpepkkrr....GrprkvdlrevlngIlyvlrtGcpWrdLPedfgswstvyrrfrrWskagvwerif 75
                +tD+qW+l+ p+l ++++rr    G++  +dlre++n+I+y  rtGc+W +LP+d+++ s+ y++f+ W+++g+ ++i+
  KIR64933.1 11 VTDAQWALIGPFLWAWRARRvsvsGHQGDYDLREIVNAIFYQNRTGCQWAYLPHDLPPKSATYYYFALWRDDGTDQAIH 89
                69****************99******************************************************99997 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   1.4   2.7e-14   1.6e-10       4     184 ..     106     232 ..     103     261 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 2.7e-14
   DDE_Tnp_1   4 revlivDattvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvitpgnvhdskglkqlldelrpr..kgklvlaDaGYa.saelldtleekg 99 
                 ++ +++D+++vr+  +  +a  g++ gk+  g+k+ +avdt  gl+++vv+t+++v d+  ++ lld + ++  + +  ++DaG+    +l+ ++    
  KIR64933.1 106 PTAVVLDSQSVRAANHVPAATTGKDVGKKVSGRKRGLAVDTL-GLVIAVVVTAASVTDNAIGIRLLDKVVEHtpTVTQAFVDAGFKqDFALHGAV---- 199
                 67899*************************************.9***************************99999999******7334444444.... PP

   DDE_Tnp_1 100 vdyiirlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwl 184
                                                 +++++s++r ++                         +  r+Rw +E++ ++l
  KIR64933.1 200 ---------------------------LGVDVEAVKRSDSRPGF-------------------------VPVRKRWIVEQTYGTL 232
                 ...........................47788888888888888.........................8888888888888877 PP

>> DDE_Tnp_1_2  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.4e-07     0.002      35      84 ..     208     257 ..     181     263 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.4e-07
  DDE_Tnp_1_2  35 kaapkkqarederarnvvErsfgwlkrrrslatryekLaensetaialtf 84 
                  k+   + ++++ r+r++vE ++g l+  r+l++ ye  +e++ +   +++
   KIR64933.1 208 KRSDSRPGFVPVRKRWIVEQTYGTLMLHRRLVREYESRPESAVSRTLWAS 257
                  6667788999**************************98888766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2183.58
//
Query:       KIR64934.1  [L=178]
Description: hypothetical protein TK50_05100 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-08   32.2   0.0    9.7e-08   31.9   0.0    1.1  1  PRiA4_ORF3  Plasmid pRiA4b ORF-3-like protein


Domain annotation for each model (and alignments):
>> PRiA4_ORF3  Plasmid pRiA4b ORF-3-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   5.4e-12   9.7e-08      18     107 ..      26     114 ..       9     132 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 5.4e-12
  PRiA4_ORF3  18 RrlevpeditlarLhevlqaaf.gwedyHlheFeieekrygeeeeedeeeeeevldeskvklddvlkekgkkltyeYDfgdsWeheielek 107
                 R l    + t+++L  ++  af  w+ +Hl  F++++++   +  + e+  +  +d+++++l+ +   +g+++ y++D+gd+W+h   + +
  KIR64934.1  26 RILAAARSHTFEQLGAAIDLAFaRWDLAHLRLFTLADQTPVCSFRTWEDMPDGAVDSDRTTLSRLT--PGDQFAYVFDMGDDWTHLCAVAD 114
                 556667789*********9888469**********777666678899999999************9..9****************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       189  (0.0105416); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1384.64
//
Query:       KIR64935.1  [L=486]
Description: integrase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-20   71.7   0.1    8.7e-19   67.9   0.0    2.1  2  Phage_integrase  Phage integrase family
    5.6e-06   26.5   0.0    1.2e-05   25.5   0.0    1.6  1  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
     0.0075   16.0   0.0      0.016   14.9   0.0    1.5  1  Arm-DNA-bind_4   Arm DNA-binding domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.038   2.3e+02      22      86 ..      76     144 ..      68     191 .. 0.76
   2 !   67.9   0.0   1.5e-22   8.7e-19       4     170 ..     279     463 ..     277     465 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.038
                      HHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEE....EEECSSSSEEEEECTHHHHHHHHHHHHH CS
  Phage_integrase  22 rdklllellyetGlRisEllsLrvkdldlengvilvh....eregKgskeravplseealellkellsk 86 
                      + ++ll+l+++   R  E++ L   +++  +    v+      +g gs +  v+++e ++e+l++l  +
       KIR64935.1  76 HARALLALAVGDRRRRTEIADLLQTCVRAGRPLPEVDrirqRLRGDGSLADMVTVGEYLTEWLTHLTVD 144
                      6799999*********************99999999965333333333336666668888888877655 PP

  == domain 2  score: 67.9 bits;  conditional E-value: 1.5e-22
                      HHHHHHHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEE........EEECSSSSE....EEEECTHHHHHHHHHHHH CS
  Phage_integrase   4 tedeverllaaleeslkirdklllellyetGlRisEllsLrvkdldlengvilvh........eregKgske....ravplseealellkells 85 
                      t ++++++l++++e +    + +  l+   G R +E+++L   +++l++++++++        +++ K+ k+    r ++l  e +++l  + +
       KIR64935.1 279 TDEQIVAFLDHARE-HTPDLYPMWHLMAYRGPRRGEACGLLDAEVRLDKREMTINhqiathgyTAVRKKPKSragnRDLALDAETVRVLAAYRA 371
                      67889999999999.777888899************************************999666666666677899***************9 PP

                      HH.......CHCCTTTSBSSBETTSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHH.HHHHCCC CS
  Phage_integrase  86 ka.......leeaeksellfaskrgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssistt.qiYthva 170
                      ++        e+ +++ l f++ +g+p   + v ++f+r+v++ag   p++ H+lRhs+at  l agvd++vv + lGHs    t  +Y  v+
       KIR64935.1 372 RRaqwrlaaGEAWPDTGLFFVRPDGRPWHPSGVTQRFRRLVRQAGFP-PIRLHDLRHSAATIALDAGVDIKVVSEQLGHSTTTLTrDTYQSVT 463
                      99999988666667777788888***********************9.************************************988998765 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0     2e-09   1.2e-05       1      52 [.     129     178 ..     129     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 2e-09
                      ..HHHHHHHHHHHHHHH-HHHHHHHHHHHTTTHHHHTTSSBGGG--HHHHHH CS
  Phage_int_SAM_3   1 tFsefleeWleeykprvkesTyatyksiiknhIlPyFgniklkkItpadiqk 52 
                      t++e+l eWl +   +v  +T   y+s  + h++P++g+i+l+ +++ +i++
       KIR64935.1 129 TVGEYLTEWLTH--LTVDDNTAVGYESLTRVHLIPHLGEIPLDRLRTGHIKT 178
                      899*********..88*********************************987 PP

>> Arm-DNA-bind_4  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.7e-06     0.016       2      35 ..      42      75 ..      41      80 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.7e-06
  Arm-DNA-bind_4  2 Wyvrvy.gykdktGkrKqktkrGFktKkEAekaea 35
                    W ++v    +  +G+r+q +++G +t+++A ++++
      KIR64935.1 42 WAYQVElPAT-SDGRRRQLRRSGLSTRRDAAAELD 75
                    7777766666.5******************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3859.33
//
Query:       KIR64936.1  [L=407]
Description: argininosuccinate lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-16   58.5   2.6    1.2e-15   57.4   2.6    1.7  1  LAL_C2        L-amino acid ligase C-terminal domain 2
    2.8e-08   33.5   0.0    6.8e-08   32.3   0.0    1.6  1  ATP-grasp_4   ATP-grasp domain
    2.6e-05   24.3   0.0    4.1e-05   23.7   0.0    1.4  1  ATP-grasp_3   ATP-grasp domain
    0.00042   20.1   0.0     0.0028   17.4   0.0    2.1  2  ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter 
    0.00058   20.4   0.1     0.0041   17.7   0.0    2.4  2  ATPgrasp_N    ATP-grasp N-terminal domain
  ------ inclusion threshold ------
      0.036   13.6   0.0       0.06   12.8   0.0    1.4  1  CPSase_L_D2   Carbamoyl-phosphate synthase L chain, ATP bindi
       0.11   12.4   0.0       0.45   10.4   0.0    1.9  2  R2K_2         ATP-grasp domain, R2K clade family 2


Domain annotation for each model (and alignments):
>> LAL_C2  L-amino acid ligase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   2.6   4.8e-19   1.2e-15       4      77 ..     330     403 ..     327     404 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 4.8e-19
      LAL_C2   4 taprpGrlkaveGleearalpgvveveltvkpGdevrpprssgdrlGyviatgdtaeeaeaaaeeaaaeiriev 77 
                 +++r+G+l+av+G++++ + pg  ++++t+++G+++ ++ +++ ++G v+a+g+tae a  +a +aa ++++++
  KIR64936.1 330 YPQRAGELVAVQGIDDLHRYPGRPRWYPTKAIGTRIAHVADGRGYAGIVLAEGPTAEIATHRAVAAAGAVHVRT 403
                 899*********************************************************************98 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   2.7e-11   6.8e-08       2     156 ..     145     284 ..     144     288 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 2.7e-11
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilnilkkefaseedvsdrly 99 
                   lP v+K + g++S  V  +++++++ +    +++e+        ++++  +s   E +++G  ++ +      G++ +l + ++ ++ ++ +++ + 
   KIR64936.1 145 GLPAVVKDTAGTSSANVWLVRDADDLAR----LRREA-------TDAAL-FGSLFAEPFLPGPVYSAETVT-WAGQTRLLGLSSRLMSAQPWFREDVT 229
                  5799*******************99987....77552.......22223.578899************976.9***********9999999******* PP

  ATP-grasp_4 100 vtsakvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnplrfagl 156
                    + ++  ++l+++e +  +v a+lg ++  +HiE+ ++ dg+ + iEvnp r++g 
   KIR64936.1 230 AFPVALPPDELREIEAWAGAVLAALGYTDRFAHIEIAMTTDGPQL-IEVNP-RIGGA 284
                  *****************************************9665.9****.88886 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.6e-08   4.1e-05      11     160 ..     121     283 ..     106     284 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.6e-08
                  HTTT.S---........-EES.S--SSSEEEEESS-------B--SS--TTE...............EEEE---SEEEEEEEEE.SSSEEEEEEEEEE CS
  ATP-grasp_3  11 LkeagvkvP....tkleaeel.eeeekklvvKprdGaggesvrvveekeeaeaaieeve........lvqefieGkplSvsllsdgekvlvlavnrql 95 
                  L++  v++P     +++ ++l + +  + vvK   G  +  v +v++ +++ +   e +         +  f++G  +S++++  + + ++l ++  l
   KIR64936.1 121 LSRV-VPFPvddaATVSLDRLaSAVGLPAVVKDTAGTSSANVWLVRDADDLARLRREATdaalfgslFAEPFLPGPVYSAETVTWAGQTRLLGLSSRL 217
                  4444.667776553344343303447899*******************88887776666899****88999************************999 PP

                  EET....TEEEEEEES----H....HHHHHHHHHHHHTTSTT--EEEEEEEEESS.SEEEEEEESS--G CS
  ATP-grasp_3  96 iekaekefvyaGnvtpietel....keevvelaeevvekleglaGyvGvDlvlkdeepyviEvNPRltt 160
                  +     +  ++  vt +++ l     +e+++ a  v+++l  +  ++ +++ ++ ++p +iEvNPR+ +
   KIR64936.1 218 MSA---QPWFREDVTAFPVALppdeLREIEAWAGAVLAALGYTDRFAHIEIAMTTDGPQLIEVNPRIGG 283
                  965...33344444444433322337899999********88888999*******************87 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.35     9e+02       5      27 ..     186     208 ..     183     213 .. 0.85
   2 !   17.4   0.0   1.1e-06    0.0028      70     111 ..     265     309 ..     241     319 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.35
  ATPgrasp_Ter   5 llvmeyLegpEySvDvlaekgev 27 
                   l   ++L+gp yS   ++++g++
    KIR64936.1 186 LFAEPFLPGPVYSAETVTWAGQT 208
                   66789**********99999876 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1.1e-06
  ATPgrasp_Ter  70 vrededgpkLLEiNpRasGGlgysala...Gvnlpylalklllgl 111
                   + ++ dgp+L+E+NpR+ G+l+  a++   Gvn+    ++l+lg+
    KIR64936.1 265 IAMTTDGPQLIEVNPRIGGALVGEAMCralGVNVYAGLVDLALGR 309
                   5678899************99765554446************995 PP

>> ATPgrasp_N  ATP-grasp N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.6e-06    0.0041      33      82 .]      52      97 ..      44      97 .. 0.79
   2 ?   -1.4   0.0       1.4   3.5e+03      63      81 ..     129     147 ..     108     148 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.6e-06
                EEE-TTT-HHHHHHHHHHHHHHS--SEEE---GGGHHHHHHHHHHTT-SS CS
  ATPgrasp_N 33 ipldlaqdpdaaleavralsrerpvdGivtftdlavplvArlaeaLgLPg 82
                ip+d   d +a+ +a+ra     +++G+++ td++ ++ A+la +LgLPg
  KIR64936.1 52 IPVDTH-DRQAVGKALRA---IGDLRGLISSTDTWGVTGAELAAELGLPG 97
                555554.45555555555...5789************************8 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.4
                 --GGGHHHHHHHHHHTT-S CS
  ATPgrasp_N  63 ftdlavplvArlaeaLgLP 81 
                 + d+a++   rla a gLP
  KIR64936.1 129 VDDAATVSLDRLASAVGLP 147
                 4688899999999999999 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.4e-05      0.06      29     180 ..     136     281 ..     108     309 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.4e-05
                  HHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEEEEETTS-EEEEEEEEECCECTCCCCEE CS
  CPSase_L_D2  29 ealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDakgnvitvcerenslqlrtqkvie 126
                     ++a+ +g P ++k ++g       ++r+ ++la l ++a+++a   fg  +++ e +l gp      v    +   + + +r  s q    + ++
   KIR64936.1 136 SLDRLASAVGLPAVVKDTAGTSSANVWLVRDADDLARLRREATDAAL--FG--SLFAEPFLPGPVYSAETVTWAGQTRLLGLSSRLMSAQPWFREDVT 229
                  4457899*************************************995..65..79*********98888888899999999*****999999999998 PP

                  EES-SS--HHHHHHHHHHHHHHHHHHT-EEEE.EEEEEEETTTTEEEEEEEESS- CS
  CPSase_L_D2 127 vAPsqtLtdeerqalreaavkvvrevgvvgag.tveflldpkskeyyviEvNtRl 180
                    P  +L ++e +++++ a +v+ ++g++     +e ++    +   +iEvN+R+
   KIR64936.1 230 AFPV-ALPPDELREIEAWAGAVLAALGYTDRFaHIEIAMTT--DGPQLIEVNPRI 281
                  8885.789999999**************9875489999996..667899*****8 PP

>> R2K_2  ATP-grasp domain, R2K clade family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00018      0.45      50     129 ..     191     279 ..     149     288 .. 0.85
   2 ?   -1.1   0.0      0.58   1.5e+03      76     112 ..     343     379 ..     338     389 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
       R2K_2  50 dedlpvlvsevvsfasEyRlfvldgeiitvsrYagegrldpdp...........evaeeavaalksalpsayvlDvgvtedgetalvEand 129
                 + + pv ++e v++a   Rl  l ++++++++  +e    +             ++a +++aal+ + +++  + +++t+d +  l+E+n+
  KIR64936.1 191 FLPGPVYSAETVTWAGQTRLLGLSSRLMSAQPWFREDVTAFPValppdelreieAWAGAVLAALGYT-DRFAHIEIAMTTD-GPQLIEVNP 279
                 5667999************************987776664443467788****************99.*************.99******8 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.58
       R2K_2  76 iitvsrYagegrldpdpevaeeavaalksalpsayvl 112
                 i +++rY g +r  p++++  ++++ +++   +++vl
  KIR64936.1 343 IDDLHRYPGRPRWYPTKAIGTRIAHVADGRGYAGIVL 379
                 557899************9999999998887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2934.20
//
Query:       KIR64937.1  [L=245]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-19   68.1   0.0    1.4e-18   67.4   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    5.2e-16   59.1   0.1    9.1e-16   58.3   0.1    1.4  1  Methyltransf_11  Methyltransferase domain
    6.1e-16   58.7   0.0    8.6e-16   58.2   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    5.5e-12   45.7   0.0    6.8e-12   45.4   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    1.8e-10   41.4   0.0      3e-10   40.7   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    1.5e-08   34.4   0.0    2.5e-08   33.7   0.0    1.3  1  MTS              Methyltransferase small domain
    4.1e-07   29.6   0.0    2.8e-06   26.8   0.0    1.9  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    5.9e-07   29.3   0.0    8.1e-07   28.8   0.0    1.1  1  NodS             Nodulation protein S (NodS)
    0.00037   20.5   0.0     0.0005   20.1   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
     0.0011   17.9   0.0      0.013   14.4   0.0    1.9  2  Methyltransf_9   Protein of unknown function (DUF1698)
     0.0015   18.3   0.0     0.0025   17.5   0.0    1.4  1  TPMT             Thiopurine S-methyltransferase (TPMT)
     0.0075   16.0   0.0      0.018   14.8   0.0    1.7  1  Met_10           Met-10+ like-protein
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.017   14.4   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
      0.044   13.5   0.0      0.067   12.9   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.11   12.1   0.0       0.16   11.6   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
       0.14   11.5   0.0       0.29   10.5   0.0    1.4  1  TehB             Tellurite resistance protein TehB
       0.17   12.5   0.0        2.9    8.6   0.0    2.1  2  Bin3             Bicoid-interacting protein 3 (Bin3)


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   1.3e-21   1.4e-18       1      97 []      44     139 ..      44     139 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 1.3e-21
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEEST.GGGSSHH.HHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssga.lhhlsde.dlekalkeiarv 92 
                      vLd GcG G ++  la+++  ++vtgvD+  e+l++a+++a+  g+ ++fv++d++++  +d  fD+vv +++ + +++++ d  ++l++++r+
       KIR64937.1  44 VLDQGCGVGFFAVPLARQG--HRVTGVDLHRELLDRAEAEAAGTGPGASFVRADVREYVSPD-AFDVVVNMYTsFGYFDEHdDNLQVLRNAYRC 134
                      9*****************5..************************************99887.9*************986526789******** PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      L pgG
       KIR64937.1 135 LVPGG 139
                      ****9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.1   8.7e-19   9.1e-16       1      96 []      45     143 ..      45     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 8.7e-19
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-....CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv....edpekalkeiaRvLkp 90 
                      Ld GcG G +a +la++g+rv+gvDl  e+l++a+++a + g+  +fv+ad+++   +d  fD+vv   + +      +d  ++l++++R+L p
       KIR64937.1  45 LDQGCGVGFFAVPLARQGHRVTGVDLHRELLDRAEAEAAGTGPGASFVRADVREYVSPD-AFDVVVNMYTSFGYfdehDDNLQVLRNAYRCLVP 137
                      899*******************************999999999789********87777.******99854444477789************** PP

                      EEEEEE CS
  Methyltransf_11  91 gGllvi 96 
                      gG+l++
       KIR64937.1 138 GGTLIV 143
                      ***986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   8.2e-19   8.6e-16      16     164 ..      35     221 ..      18     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 8.2e-19
  Methyltransf_23  16 llpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae........kakkaqkdqfdeqeaaepqgkfdlIvlrev.lehvp...d 97 
                      ll+  ++ +rvLd GcG+G ++  l+++g+ vtgvDl +e+ ++ae        +a++ + d      + ++ + fd++v++++ ++ ++   d
       KIR64937.1  35 LLA-FPPESRVLDQGCGVGFFAVPLARQGHRVTGVDLHRELLDRAEaeaagtgpGASFVRADVR----EYVSPDAFDVVVNMYTsFGYFDehdD 123
                      332.57889***********************************99999998776666666666....778999******99853677774446 PP

  Methyltransf_23  98 ppellrqiatllkpgGylllseplasl..........................kedrllldwly...lvpagrhi....sffsarslkelleea 158
                         +lr+++++l pgG l++    ++                            ++r   dw++   ++   +h      ++sa +l +++ +a
       KIR64937.1 124 NLQVLRNAYRCLVPGGTLIVDLLSKEVyaswvgppkivdvpggmvvmrdtildDWTRYRTDWTLvrgDRA--EHTsltcWVYSAAELTDMVAQA 215
                      779****************999988889999********************9889999999977322333..5544476889************ PP

  Methyltransf_23 159 Glevve 164
                      G+e ve
       KIR64937.1 216 GFEKVE 221
                      ***997 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   6.5e-15   6.8e-12       5     113 ..      42     147 ..      40     215 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 6.5e-15
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevl....naladpdki 93 
                       rvlD GCG G+++  la   +++ +v+G+D   e + +A+++a+  g   ++F ++d+ e  +    ++ fD+++   +     +   d+ ++
       KIR64937.1  42 SRVLDQGCGVGFFAVPLA---RQGHRVTGVDLHRELLDRAEAEAAGTGP-GASFVRADVREyVS----PDAFDVVVNMYTSfgyfDEHDDNLQV 127
                      68****************...34567*******************9999.5**********544....59****98886666777999****** PP

  Methyltransf_31  94 leeiervlkpggilliedpr 113
                      l+++ r l pgg l+++  +
       KIR64937.1 128 LRNAYRCLVPGGTLIVDLLS 147
                      ****************9988 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   2.8e-13     3e-10       1      99 []      45     141 ..      45     141 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 2.8e-13
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvv.asnvlhhl...kdirevldnir 90 
                      L+ GcG+G ++ +l+++  + ++tgvD++++ +++a+++ a   +  +++v+ ++++  + d   +fD+vv +   + ++   +d  +vl+n++
       KIR64937.1  45 LDQGCGVGFFAVPLARQ--GHRVTGVDLHRELLDRAEAEAAG-TGPGASFVRADVREYVSPD---AFDVVVnMYTSFGYFdehDDNLQVLRNAY 132
                      788**************..**************555555555.5568899999999987665...9***998889999999988888******* PP

  Methyltransf_12  91 klLkpgGrl 99 
                      ++L+pgG l
       KIR64937.1 133 RCLVPGGTL 141
                      *******86 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   2.3e-11   2.5e-08      31     137 ..      40     143 ..      15     155 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 2.3e-11
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHHHHHHHHHHHHHE CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdlivsNPPfhagkatelavaeeliaeAkeaL 129
                  + +vlD GcG+G+ ++ la++  +  vt vd + + l+ a++ ++ ++  +++v  dv e v+++ fd++v N     g   e++   +++++A ++L
  KIR64937.1  40 PESRVLDQGCGVGFFAVPLARQGHR--VTGVDLHRELLDRAEAEAAGTGPGASFVRADVREYVSPDAFDVVV-NMYTSFGYFDEHDDNLQVLRNAYRCL 135
                 5678****************97776..9*****************************************987.5555556666677788999******* PP

                 EEEEEEEE CS
         MTS 130 kegGeLli 137
                  +gG+L++
  KIR64937.1 136 VPGGTLIV 143
                 ****9987 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   2.7e-09   2.8e-06      48     156 ..      41     148 ..      22     155 .. 0.82
   2 ?    0.2   0.0      0.36   3.8e+02     202     217 ..     206     221 ..     202     229 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.7e-09
                      TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEE...EES-GG.G-S-HHHHHH CS
  Ubie_methyltran  48 gakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvt...vsfGlr.nvtDklkaLk 137
                       ++vlD  +G g +a+ l++   +  +v+++D+  ++L+ +e+ +  +g     f+ a+  e     d+fDvv     sfG      D l++L+
       KIR64937.1  41 ESRVLDQGCGVGFFAVPLAR---QGHRVTGVDLHRELLDRAEAEAAGTGP-GASFVRADVREYVSP-DAFDVVVnmyTSFGYFdEHDDNLQVLR 129
                      5689**********999975...5668**************999988876.579*****9998655.688876433379**751567899**** PP

                      HHHHHEEEEEEEEEEEE-- CS
  Ubie_methyltran 138 eayrvlkpGGrlvvlefsk 156
                      +ayr l pGG+l+v  +sk
       KIR64937.1 130 NAYRCLVPGGTLIVDLLSK 148
                      ***********99866665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.36
                      HHHHHHHHHTTEEEEE CS
  Ubie_methyltran 202 etlkeliedaGfksve 217
                       +l +++ +aGf++ve
       KIR64937.1 206 AELTDMVAQAGFEKVE 221
                      58999********997 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   7.7e-10   8.1e-07      45     155 ..      42     154 ..      18     157 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 7.7e-10
        NodS  45 adalevGcaaGalterlapyckrltvvdvveeaiararervkes.shiswivsdvqqfstdekfdlivvaev.lyyiedvaelraavrnlvsllapdgq 141
                 + +l+ Gc  G +++ la   +r+t vd+  e ++ra      + +  s++ +dv+++ + + fd++v     + y ++  +    +rn  + l p+g+
  KIR64937.1  42 SRVLDQGCGVGFFAVPLARQGHRVTGVDLHRELLDRAEAEAAGTgPGASFVRADVREYVSPDAFDVVVNMYTsFGYFDEHDDNLQVLRNAYRCLVPGGT 140
                 6799*********************************9876654289********************9765415689999998899************* PP

        NodS 142 lvfGsardavcrrw 155
                 l+     ++v  +w
  KIR64937.1 141 LIVDLLSKEVYASW 154
                 *9877766666666 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   4.7e-07    0.0005      25      86 ..      40      93 ..      23     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.7e-07
  Methyltransf_32 25 galtvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfae 86
                     ++ +v+D G+G g+ +  la    + +++v+g+d+++el ++ae+ a+  g       sf  
       KIR64937.1 40 PESRVLDQGCGVGFFAVPLAR---Q-GHRVTGVDLHRELLDRAEAEAAGTG----PGASFVR 93
                     6789*****************...5.9*****************9998777....3445554 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.3e-05     0.013     117     220 ..      42     146 ..      32     155 .. 0.82
   2 ?    1.3   0.0      0.12   1.3e+02     228     267 ..     185     224 ..     160     229 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.3e-05
                     -EEEEET-TTSHHHHHHHHCT-SEEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T---EEEEEEE....S-GGG-S-HHHHHHHHHC CS
  Methyltransf_9 117 rtildvGcgnGyhlwrmvgegaklvvGidPselfliqfeavrkllgedqrahllplgieqlpeleafdtvfsm....GvlyhrrsPldhllqlkd 207
                      ++ld Gcg G++   ++ +  + v G+d  +  l   ea  +  g+   a  +   + +  + +afd+v  m    G +      l+ l++   
      KIR64937.1  42 SRVLDQGCGVGFFAVPLARQ-GHRVTGVDLHRELLDRAEA--EAAGTGPGASFVRADVREYVSPDAFDVVVNMytsfGYFDEHDDNLQVLRNAYR 133
                     679**********9987655.57899******99998888..556777778888889*************9884433556667788888999999 PP

                     TEEEEEEEEEEEE CS
  Methyltransf_9 208 qlvkgGelvletl 220
                     +lv gG+l+++ l
      KIR64937.1 134 CLVPGGTLIVDLL 146
                     9********9865 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.12
                     -EE--SS-BTTBSS---EEBHHHHHHHHHHTT-EEEEEEE CS
  Methyltransf_9 228 avlvPedryakmrnvyfiPsaaalkvWlekvgfvdvrivd 267
                       lv  dr  +   + ++ saa l+  + ++gf  v+++ 
      KIR64937.1 185 WTLVRGDRAEHTSLTCWVYSAAELTDMVAQAGFEKVECFG 224
                     568888998899999999******************9985 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.4e-06    0.0025      31      81 ..      34      84 ..      15     116 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.4e-06
                HT.T-S--EEEEEET-TT-HHHHHH-BTTEEEEEE-S-HHHHHHHHHHHTT CS
        TPMT 31 dalkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvekffeeanl 81
                + l+ +++ rvl  +CG +  +v lA qg++v Gv+l    + ++ +ea  
  KIR64937.1 34 PLLAFPPESRVLDQGCGVGFFAVPLARQGHRVTGVDLHRELLDRAEAEAAG 84
                447788999****************************99999988777654 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.7e-05     0.018      78     133 ..      13      71 ..       5     118 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.7e-05
                 TTTS---GGGHHHHHHHHTT.....--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES- CS
      Met_10  78 vskvyfsskleaErerlakl.....veegevVvdvfAGiGpfaipiakyskakrvlaidln 133
                 +s+v+fs + +   + l+++     + +  +V+d   G+G+fa+p+a+  +++rv ++dl 
  KIR64937.1  13 FSDVLFSAERARHAADLVTTspllaFPPESRVLDQGCGVGFFAVPLAR--QGHRVTGVDLH 71 
                 5666666666655555554322223678999*****************..99999**9986 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.6e-05     0.017      59     165 ..      37     144 ..      19     195 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
                 T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-.EEEEES-GGG-----SEEEEES-GGGTS....GGGHHHHHHHH CS
        CMAS  59 elkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerk.vevklldyedldekvdrvvsvgafehvg....kenydtffkkl 152
                    p +++Ld GcG G  ++  +++ + +v g+ l +e   +a+++ + ++   + v+ ++ +y   ++ +d vv  ++   +g    ++   +  +++
  KIR64937.1  37 AFPPESRVLDQGCGVGFFAVPLARQ-GHRVTGVDLHRELLDRAEAEAAGTGPGASfVRADVREYVS-PDAFDVVV--NMYTSFGyfdeHDDNLQVLRNA 131
                 5667899***************999.*************999999988888654326777777765.45777665..3444444100133334455566 PP

                 HHHS-TT-EEEEE CS
        CMAS 153 kkllkedGllllh 165
                 ++ l ++G+l++ 
  KIR64937.1 132 YRCLVPGGTLIVD 144
                 7777788887765 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.3e-05     0.067      68     117 ..      35      81 ..      15     100 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.3e-05
                 HTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHH CS
        PCMT  68 llelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrn 117
                 ll + + +rvL+ G+G G+ ++ lar      rv +++  +el ++a+++
  KIR64937.1  35 LLAFPPESRVLDQGCGVGFFAVPLARQ---GHRVTGVDLHRELLDRAEAE 81 
                 6778899**************999875...45667*********999875 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.16      12      81 ..      39     110 ..      28     137 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
        MetW  12 kpgsrvldlGcGdGellell.keekqvdgrGleldeegvaecvakGlsviqgdldkdlenfed.ksfdyvvl 81 
                 +p+srvld GcG G +   l ++ + v+g  l  +    ae+ a G       +  d+ ++ + ++fd+vv 
  KIR64937.1  39 PPESRVLDQGCGVGFFAVPLaRQGHRVTGVDLHRELLDRAEAEAAGTGPGASFVRADVREYVSpDAFDVVVN 110
                 899***********9876661444555555554443334455555555555556666666643277888875 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00027      0.29      32     139 ..      42     149 ..      37     160 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00027
                 -EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-TTEEEEE--GGG----S-EEEEEE..ESSGGGS-GGGHHHHHHHHHHTEEEEE CS
        TehB  32 gkvldlgcgqgrnslylsllgydvtawdknensiafleeikekenlknistalydineaklderydfils..tvvlmfleaeripsiienmqectkvgg 128
                 ++vld gcg g  ++ l+ +g+ vt +d   + +   e  +   +  + s    d+ e    + +d ++   t    f e++   ++++n  +c  +gg
  KIR64937.1  42 SRVLDQGCGVGFFAVPLARQGHRVTGVDLHRELLDRAEAEAA-GTGPGASFVRADVREYVSPDAFDVVVNmyTSFGYFDEHDDNLQVLRNAYRCLVPGG 139
                 689*************************98876655443332.22333455556777777777777776522344456666677777777777777777 PP

                 EEEEEEEB--S CS
        TehB 129 ynlivaamstd 139
                   liv  +s +
  KIR64937.1 140 -TLIVDLLSKE 149
                 .4677666655 PP

>> Bin3  Bicoid-interacting protein 3 (Bin3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0027       2.9      17      50 ..     120     152 ..     105     157 .. 0.80
   2 ?    1.8   0.0      0.36   3.7e+02      44      93 ..     176     227 ..     160     241 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0027
        Bin3  17 kgDeglkrlfkkiyellkpgGvlilEpqewksYk 50 
                  +D+ l +++++ y++l pgG+li++  +++ Y+
  KIR64937.1 120 EHDDNL-QVLRNAYRCLVPGGTLIVDLLSKEVYA 152
                 556665.689****************99999997 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.36
        Bin3  44 qewksYkkkkklseelkenykelklrpe...dfeevLleevgfesveeleeke 93 
                  +w+ Y+   +l +  +++ ++l ++     ++++++ +  gfe+ve +++ +
  KIR64937.1 176 DDWTRYRTDWTLVRGDRAEHTSLTCWVYsaaELTDMVAQ-AGFEKVECFGDFD 227
                 689999999999999999999988776644467777777.99**999988554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1864.18
//
Query:       KIR64938.1  [L=393]
Description: MFS transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-16   59.1  36.2    3.6e-16   59.0  29.2    2.2  2  MFS_1       Major Facilitator Superfamily
     0.0024   16.8   1.2     0.0046   15.9   0.0    1.9  3  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
        4.9    7.3  10.3       0.93    9.6   5.9    2.0  2  DUF4079     Protein of unknown function (DUF4079)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0  29.2   6.1e-20   3.6e-16       4     317 ..      18     306 ..      14     316 .. 0.74
   2 !    8.1  16.6   0.00019       1.1      23     167 ..     214     368 ..     201     392 .. 0.70

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 6.1e-20
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.lllvlrvlqGlgag 100
                 +++++ +++s+ +p l  +l +  ++  +++g +l+l +++++++ lp+++l++r+G  r+ll++++l  lg+l +l a   ++ l +++ +l +++++
  KIR64938.1  18 GFLVNLINFSV-YPYLAVLLRDRMNLGMDQVGVILGLATFVQFAGGLPGAALAERLGLQRCLLAAMVLQTLGSLGFL-AgGAWPaLTIAALFLRSAASA 114
                 44555555555.555555999***************************************************44444.658899999************ PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpa 199
                 ++ p++  +++  ++++er+r ++  +a+ ++G++lgp++g+l++     +++f +++++ l + +  +ll +e++ +++ ++p ++            
  KIR64938.1 115 VYSPSVRGYTVLGATPDERPRLVSASYATGNVGIALGPVAGALFI--HDPTVMFAVATVLHLAMTIGHALLPRERRADHEVVEPLRR------------ 199
                 *********************************************..6688999999999999988433444555555555544444............ PP

       MFS_1 200 wkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavts 298
                   al+   vl   +++ +l+   ++ ++++l +y  e +  +  +  g ++++++l+ a++++l+++ + r+    +  +al+++ la+ +la+++   
  KIR64938.1 200 --ALHGIAVL--PFAVTALTLYLHMHFYQYLSSY-AEGRVPA--VFYGSAMMAYSLLLAVIQPLISQRVERMRY--PHAMALGFGGLAVGMLAFTGGN- 288
                 ..33333333..3333333333555588999998.6666666..555556888888886777777777777544..6677777777777777777777. PP

       MFS_1 299 savllllvlvliGfglgfv 317
                   ++++++++ iG g +++
  KIR64938.1 289 -EIAVAAGVLAIGAGNSVI 306
                 .444444555567666655 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00019
       MFS_1  23 laedlg..............ispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlgagalfpag 106
                 l+  l+              + + ++g ++ +y+l+ av +++++  ++r+ r +  + lg+ ++a+g  +l+f+ +   ++v+  + ++gag ++   
  KIR64938.1 214 LTLYLHmhfyqylssyaegrVPAVFYGSAMMAYSLLLAVIQPLISQRVERM-RYPhAMALGFGGLAVG--MLAFTGG-NEIAVAAGVLAIGAGNSVIFL 308
                 333333334444434444445555699************************.8888************..5555433.358888888999999999999 PP

       MFS_1 107 aaliadwfpkeergrai.gllsagfslGailgpllggllasslgWravfyilaivsllafvl 167
                    + +++  ++ + ++ g   ++ ++Ga l  ++gg l++++   ++  ++++ +++a+ +
  KIR64938.1 309 KNTLEALARTDRSPTVVfGQQRLAEGAGAFLSGVAGGGLYQLFE--SAGNLAGFWLAIAAQC 368
                 99999999996666555599999*****************8865..4444444444444332 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.7e-07    0.0046      17      74 ..      27      84 ..      24      95 .. 0.86
   2 ?   -1.6   0.0      0.16   9.6e+02     232     252 ..     210     230 ..     103     275 .. 0.67
   3 ?   -2.8   0.1      0.36   2.2e+03     357     378 ..     331     352 ..     290     356 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.7e-07
  MFS_1_like 17 sllPYltiylk.skglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslll 74
                s++PYl + l+   +l + ++g+i+ ++ ++++++ +  ++la+r+g +  ++++  +l
  KIR64938.1 27 SVYPYLAVLLRdRMNLGMDQVGVILGLATFVQFAGGLPGAALAERLGLQRCLLAAM-VL 84
                689********6679********************************998776544.33 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.16
  MFS_1_like 232 lvalilgmswgiienFlflYL 252
                 +v+++   ++  ++++l+ Y 
  KIR64938.1 210 AVTALTLYLHMHFYQYLSSYA 230
                 333344444445555555554 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.36
  MFS_1_like 357 lyfglGralGsliGGllwdlks 378
                 l  g+G +l  ++GG l++l++
  KIR64938.1 331 LAEGAGAFLSGVAGGGLYQLFE 352
                 4567777777777777777665 PP

>> DUF4079  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.37   2.2e+03      53      73 ..      74      94 ..      49     122 .. 0.78
   2 ?    9.6   5.9   0.00016      0.93       4     134 ..     159     286 ..     156     292 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.37
     DUF4079 53 lgslllllvvlgaigglvlly 73
                l ++ll+ +vl ++g+l +l 
  KIR64938.1 74 LQRCLLAAMVLQTLGSLGFLA 94
                567788888888888877665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00016
     DUF4079   4 lH.PvlmvllvfpllgavaylG..wqtrqrrlqskaerkekipkkvrdeHvklgslllllvvlgaigglvllylrrgklfpssHlyaGlavvvLlalsa 99 
                 +H P +m++++++l  a +  G  +  r+rr +++      +++  r  H  +     + ++++++ + +  yl    +  ++ +++G a+++  +l a
  KIR64938.1 159 IHdPTVMFAVATVLHLA-MTIGhaLLPRERRADHE-----VVEPLRRALHGIAVLPFAVTALTLYLHMHFYQYLSSYAEGRVPAVFYGSAMMAYSLLLA 251
                 55478888877777666.66664488888866666.....88888888888777777888888888999999999999********************* PP

     DUF4079 100 alvpeiqkgkstaRtlHialnvlalllfawqaitG 134
                 +++p i+++ +++R+ H+++  +  l   + a+tG
  KIR64938.1 252 VIQPLISQRVERMRYPHAMALGFGGLAVGMLAFTG 286
                 *****************877666555566666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2562.94
//
Query:       KIR64939.1  [L=385]
Description: hypothetical protein TK50_05165 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-18   67.7   7.2    1.1e-18   67.7   7.2    2.1  3  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
    1.4e-11   44.9   0.9    2.7e-11   43.9   0.9    1.5  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    4.5e-05   23.6   0.1    0.00023   21.3   0.0    2.0  2  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       1.8   1.1e+04      55      66 ..      11      22 ..       4      37 .. 0.44
   2 ?   -1.4   0.1      0.45   2.7e+03      62      85 ..      88     100 ..      49     140 .. 0.57
   3 !   67.7   7.2   1.9e-22   1.1e-18       2     130 ..     225     360 ..     224     364 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.8
                   HHHHHHHHHHHH CS
  Acyl-CoA_dh_2 55 ralleraaarae 66
                    ++ er  a+a 
     KIR64939.1 11 HTVAERLRADAV 22
                   333333333322 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.45
                    HHHHHHHHHTT----HHHHHHHHH CS
  Acyl-CoA_dh_2  62 aaraealaaagkevtvedraearr 85 
                    a+            + ++r+ea++
     KIR64939.1  88 AEL-----------ATSLRQEAAT 100
                    222...........2222222222 PP

  == domain 3  score: 67.7 bits;  conditional E-value: 1.9e-22
                    HHHHHHHHHHHHHHHHHHHHHHHHHC...TTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHH....HHHH CS
  Acyl-CoA_dh_2   2 giaavalGaAraalaefvelarervr...assgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearra....aala 90 
                    +++ v +G+  +a++e++ ++rer+r   as+  ++ ddp + +  +e +a l AAr+l  +a+ + +++  +g ++t+++r + +++    +++ 
     KIR64939.1 225 VLTQVLVGITAGAIDEAARYTRERSRpwpASGLGQAVDDPHVLTGYGEFTAVLAAARLLADQATHALTEADTRGPALTPAERGRTALTvsaaKVVS 320
                    567899****************************************************************************999887777799** PP

                    HHHHHHHHHHHHHHCGGGGGBTT-HHHHHHHHHHHHCTSG CS
  Acyl-CoA_dh_2  91 velaiaavdalfeaaGgsalrkesplqRlwRDahaaaaHa 130
                    ++la++a++++fe +G++a++ +  l+R+wRDa++++ H 
     KIR64939.1 321 SRLATDATSRIFEFTGARATARATGLDRFWRDARTLTLHD 360
                    *************************************995 PP

>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.9   4.5e-15   2.7e-11      22     133 ..     230     358 ..     216     360 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 4.5e-15
                    -SHHHHHHHHHHHHHHHTS....B-CC.-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------............HHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_1  22 alglarraleealeyarrr....kafg.kplidhqlvreklaemaaeleaarllvyraaealdagkpd............raeasmaKlfaselaq 100
                     +g+ + a++ea++y r+r     a g +  +d+++v    +e+ a l+aarll+ +a++al +++ +               +s+aK++ s+la+
     KIR64939.1 230 LVGITAGAIDEAARYTRERsrpwPASGlGQAVDDPHVLTGYGEFTAVLAAARLLADQATHALTEADTRgpaltpaergrtALTVSAAKVVSSRLAT 325
                    57888999999999999997777677779*******************************99998888889*****99988999************ PP

                    HHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHH CS
  Acyl-CoA_dh_1 101 evadlamqllGgaGyleeypverlyrdarvlri 133
                    +++++  +  G++++++ ++++r++rdar+l++
     KIR64939.1 326 DATSRIFEFTGARATARATGLDRFWRDARTLTL 358
                    *****************************9985 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.8e-08   0.00023      17      97 .]     115     190 ..     105     190 .. 0.80
   2 ?   -0.8   0.0      0.31   1.8e+03      12      44 ..     295     328 ..     287     354 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.8e-08
                    --EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE...GGGEEE-----BSS-TTS-EEEEEEE.. CS
  Acyl-CoA_dh_M  17 kttaaerdggeyvlnGeKiwitnaaiatlalvlartekpdrarglslflvp.rdapgvsvrrieeklGlrglptgelvfedv 97 
                     t  a++  ++ +++G+  + t+ a a+ +lv a    +d +++ +l++v   + +gvs+ + +++lG+r +++g + f+dv
     KIR64939.1 115 IT--ATTTSDGLRVSGRGAFATGCAVADRLLVSAI---RD-DHTARLVVVMhGSCSGVSHPPDWDNLGQRLTASGSVAFDDV 190
                    34..4444445************************...44.466667777736666****9999****************97 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.31
                    -GGG---EEEEETT.EEEEEEEEEEEETTTT.-S CS
  Acyl-CoA_dh_M  12 dvasvkttaaerdggeyvlnGeKiwitnaai.at 44 
                    d+++ + t aer +   +++ +K+++++ a+ at
     KIR64939.1 295 DTRGPALTPAERGRTALTVSAAKVVSSRLATdAT 328
                    5666666457788888999999999988776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2785.29
//
Query:       KIR64940.1  [L=204]
Description: superoxide dismutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-33  113.4   0.0    7.7e-33  112.7   0.0    1.4  1  Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal do
    1.4e-28   99.2   0.0    2.8e-28   98.2   0.0    1.5  1  Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin


Domain annotation for each model (and alignments):
>> Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   0.0   8.5e-37   7.7e-33       1     101 [.      91     192 ..      91     193 .. 0.96

  Alignments for each domain:
  == domain 1  score: 112.7 bits;  conditional E-value: 8.5e-37
                 --HHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETT.TEEEEEEEETTTBGGGGTTCEEEEEE-SGGGTHHHHTT-HHHHHHHHGGGBBHHH CS
    Sod_Fe_C   1 psgelaeaieedfgslekfkkefkaaalavfgsGwawLvldkk.kkLeivttknqdnplvkeakplLalDvwehAYyldyqnkradYieafwnvvnWke 98 
                 p+gela+ai+e+fgs+++f+ +++aa+ +v+gsGw++L++++  ++L + ++ +++ ++ ++++plL++D wehAYyl+y+n r+dY++++wn+vnW++
  KIR64940.1  91 PDGELAAAIDEHFGSFDAFAGQLSAATKSVQGSGWGMLAWEPLgQRLIVEQVYDHHGNVGQGSTPLLVFDAWEHAYYLQYKNVRPDYVDRLWNLVNWSD 189
                 889**************************************98679****************************************************9 PP

                 HHH CS
    Sod_Fe_C  99 vee 101
                 v +
  KIR64940.1 190 VIA 192
                 965 PP

>> Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.0   3.1e-32   2.8e-28       2      82 .]       4      84 ..       3      84 .. 0.99

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 3.1e-32
                ------SS-TTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHHCHHHHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTB- CS
    Sod_Fe_N  2 yeLpeLpYaydaLePhisketlelHhdkHhktYvnnlNkalekleeakkkleelvlkklekalrnnagghvnHslfwknls 82
                y+Lp++pY+y aLeP +s ++lelHh+kHh++Yv+++N+ +e+l+ea++k +  +l +lek  ++n +ghv+H++fw nls
  KIR64940.1  4 YTLPDMPYDYGALEPAMSGQILELHHSKHHAAYVKGANDGIEQLAEARAKGDFGTLVGLEKTFAFNLSGHVLHTIFWGNLS 84
                9*****************************************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1535.16
//
Query:       KIR64941.1  [L=88]
Description: hypothetical protein TK50_05175 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 616.59
//
Query:       KIR64942.1  [L=459]
Description: integrase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-05   24.1   0.0    6.2e-05   22.9   0.0    1.5  1  Phage_integrase  Phage integrase family


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   3.4e-09   6.2e-05      24     168 ..     269     441 ..     260     444 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3.4e-09
                      HHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEE.....................EEECSSSSE......EEEECTHHHHHHHHHHHHHHCHC CS
  Phage_integrase  24 klllellyetGlRisEllsLrvkdldlengvilvh.....................eregKgske......ravplseealellkellskalee 90 
                       ++ + ly  +lR sE+l+Lr  d +l    + +                       r +K          r+vp++ e++  l+  +++    
       KIR64942.1 269 VAFYACLYFAALRPSEALGLRERDCHLPATGWGLLtveksrpaagkrytdsgevhdDRGLK---HrgvteaREVPIPPELVAILRAHVDRF--G 357
                      5778899999**************9887644433335599977777777777666633333...0444667*******************9..6 PP

                      CTTTSBSSBETTSSB--HHHHHHHHHHHHHHCT-S......SC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHC CS
  Phage_integrase  91 aeksellfaskrgkplsrqtvrkafkraveeagie......kpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYth 168
                         +  lf s rg+ + ++t+++++++a++ +          + +p +lRh+  +  l+ag++  +v++  GHs     ++Y++
       KIR64942.1 358 VGVDGRLFRSDRGNVVASSTYSRVWEEARRLSLPPdrvaspLAGRPYDLRHAGVSLWLNAGLPAPEVAQRAGHSVDVLLKVYAK 441
                      6777889***********************94333556777899******************************9999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3249.64
//
Query:       KIR64943.1  [L=61]
Description: excisionase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-07   31.0   0.1    2.5e-07   30.8   0.1    1.1  1  HTH_17       Helix-turn-helix domain
    0.00014   21.6   0.2    0.00029   20.5   0.0    1.7  2  HTH_23       Homeodomain-like domain
    0.00038   20.4   0.1      0.001   19.0   0.0    1.7  2  HTH_29       Winged helix-turn helix
      0.002   18.2   0.2      0.024   14.8   0.0    2.1  2  HTH_28       Helix-turn-helix domain
  ------ inclusion threshold ------
      0.049   13.8   0.1       0.17   12.1   0.0    1.7  2  HTH_Tnp_1_2  Helix-turn-helix of insertion element transposas


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.1   6.9e-11   2.5e-07       1      51 []       5      58 ..       5      58 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 6.9e-11
      HTH_17  1 lltveEaAelLg.vsrstvyrlirrgelpaa.k.iGrrwriprsdleewlekrr 51
                lltv E+ + L+ vsr+t yr++  g  p + k  ++ +ri r  l +wle++r
  KIR64943.1  5 LLTVPEVLAVLNgVSRRTFYRWRELGVAPDCiKlPNGELRIERRNLRAWLEQHR 58
                79******999989**********99999999886677*************986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   8.1e-08   0.00029      17      39 ..       5      28 ..       1      32 [. 0.87
   2 ?   -1.2   0.1      0.55     2e+03      36      42 ..      48      54 ..      42      61 .] 0.52

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 8.1e-08
      HTH_23 17 GlsvreIAreL.gvsrrTvyrwlk 39
                 l+v+e+ + L gvsrrT yrw++
  KIR64943.1  5 LLTVPEVLAVLnGVSRRTFYRWRE 28
                6789999999978*********86 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.55
      HTH_23 36 rwlkryr 42
                r l+++ 
  KIR64943.1 48 RNLRAWL 54
                3344442 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.9e-07     0.001      17      35 ..      11      29 ..       4      32 .. 0.90
   2 ?   -1.1   0.0      0.55     2e+03      22      35 ..      43      56 ..      42      60 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.9e-07
      HTH_29 17 qiAkllglsrrtvyrwlkr 35
                 +A l g+srrt+yrw+++
  KIR64943.1 11 VLAVLNGVSRRTFYRWREL 29
                68999************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.55
      HTH_29 22 lglsrrtvyrwlkr 35
                l++ rr  + wl+ 
  KIR64943.1 43 LRIERRNLRAWLEQ 56
                56667777777764 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.6e-06     0.024      17      33 ..      10      27 ..       3      35 .. 0.87
   2 ?    1.9   0.1     0.068   2.4e+02      21      35 ..      42      56 ..      41      61 .] 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.6e-06
      HTH_28 17 e.aArelgisrrtvyrWi 33
                e +A + g+srrt yrW+
  KIR64943.1 10 EvLAVLNGVSRRTFYRWR 27
                5589999**********7 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.068
      HTH_28 21 elgisrrtvyrWikr 35
                el i rr ++ W+ +
  KIR64943.1 42 ELRIERRNLRAWLEQ 56
                578899999999976 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.6e-05      0.17      32      48 ..      12      28 ..       1      31 [. 0.77
   2 ?   -0.4   0.0      0.35   1.2e+03      35      49 ..      42      56 ..      39      60 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.6e-05
                 HHHHHTS-HHHHHHHHH CS
  HTH_Tnp_1_2 32 iaeevgvsrsTlykWkk 48
                 +a   gvsr+T+y+W++
   KIR64943.1 12 LAVLNGVSRRTFYRWRE 28
                 56677**********95 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.35
                 HHTS-HHHHHHHHH- CS
  HTH_Tnp_1_2 35 evgvsrsTlykWkkk 49
                 e+ ++r+ l  W+++
   KIR64943.1 42 ELRIERRNLRAWLEQ 56
                 788999999999943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 478.38
//
Query:       KIR64944.1  [L=205]
Description: hypothetical protein TK50_05205 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0008   19.3   7.8     0.0011   18.9   7.8    1.3  1  DUF2637   Protein of unknown function (DUF2637)


Domain annotation for each model (and alignments):
>> DUF2637  Protein of unknown function (DUF2637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   7.8   6.3e-08    0.0011       3      92 ..      13     105 ..      11     132 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.3e-08
     DUF2637   3 aaifvlivaviafvlSFaalrdlAqkag...lsealawlfPltvDglivaatllalaaslrgrsalllrllawllvalsswiNgieatdvtlk 92 
                  +++vl+v++ a ++SF++++d   + +   +  +++w+  ++ + l++aa+l++ + ++ g +   + +l+ ++vals++   + a+++  +
  KIR64944.1  13 LVLIVLTVGGLAGAASFTHVHDWTMANSptgTGDWFGWANAAISELLPLAALLTIRRRRRTGGPVGYPLFLLVCAVALSLAAQLAVAKPSLSG 105
                 5899*****************97666542237889***********************999999999************88776666444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1629.42
//
Query:       KIR64945.1  [L=476]
Description: cell division protein FtsK [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-15   57.5   0.0    2.3e-15   56.6   0.0    1.4  1  FtsK_SpoIIIE   FtsK/SpoIIIE family
    0.00066   18.7   0.0      0.012   14.5   0.0    2.1  2  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
     0.0014   19.0   1.2      0.029   14.8   0.3    2.6  2  AAA_16         AAA ATPase domain
  ------ inclusion threshold ------
      0.026   13.1   0.2      0.099   11.2   0.0    1.8  2  DUF853         Bacterial protein of unknown function (DUF853)
      0.059   13.5   0.0        0.1   12.7   0.0    1.3  1  DUF87          Helicase HerA, central domain
      0.062   13.0   0.0       0.12   12.1   0.0    1.4  1  AAA_29         P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   7.8e-19   2.3e-15       7     216 ..     196     410 ..     191     423 .. 0.81

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 7.8e-19
                   TSHHHHT---TTEEEEEEETTS-EEEEEGGGS-........SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS.SCGGGTT-TTBSS CS
  FtsK_SpoIIIE   7 eskkfrtessqlpvalgkeisgnplvldlkkma.......shllvaGatgsGKStalntLilSlatthtPeeVqliliDykgv.elsalediphlls 95 
                   ++ +  +  ++lpva  +++ g +l +d+ + +       sh+l+aGatgsGK  +l +Li +la+      V+    D+kg+ el+a   +   ++
    KIR64945.1 196 RRDPLAEVVGPLPVAEVPDFDGLALGVDEEGQPyrlrlsgSHVLIAGATGSGKGSVLWSLIRALAAGIRSGLVEVWAFDPKGGmELAAGVPLFARFA 292
                   5556666678889999999999999999999999999999*****************************************9999998666655555 PP

                   .S-B-SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTT---B-TT-................................------- CS
  FtsK_SpoIIIE  96 vavatdperalraleeLvkemeeryalfreagvrsiaaydgeiaedpldifgdvflvlDnyddlaaene..........ritsLsnqgpsygvhvlv 182
                       +dp+  + +lee vk m+ r+a +r    +++          p+  +++++lv+D+ ++l a  +             +L +qg + gvhv++
    KIR64945.1 293 ---YDDPDSMAGVLEEAVKRMRVRAARLRGVTRQHVPT--------PQ--DPLLVLVVDELAALTAYITdrkvrdrikeALGLLLSQGRAVGVHVVA 376
                   ...9******************9998877665555554........22..2455666666666665555555666466677889************* PP

                   ----B-----EEEEEEC-HHHHHHHHHHH....H CS
  FtsK_SpoIIIE 183 tagrelekrpslvvivderieLrlaapkdssvlv 216
                   + +   +   + ++++  ri Lrl+ p++  +  
    KIR64945.1 377 ALQDPRKDVLPFRDLFPTRIGLRLTEPEQVDMVL 410
                   *9999999999*****************954443 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.1e-06     0.012       8      42 ..     228     262 ..     223     280 .. 0.78
   2 ?    1.7   0.0     0.032        97     259     282 ..     358     381 ..     318     383 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.1e-06
  TrwB_AAD_bind   8 plpkeretqhilivGttGsGKtqalekllrairar 42 
                    p++ +   +h+li+G+tGsGK  +l +l+ra+ a 
     KIR64945.1 228 PYRLRLSGSHVLIAGATGSGKGSVLWSLIRALAAG 262
                    777888899******************99987654 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.032
  TrwB_AAD_bind 259 eelksllaegRkfGgavvlglqsi 282
                    e+l  ll +gR +G+ vv++lq+ 
     KIR64945.1 358 EALGLLLSQGRAVGVHVVAALQDP 381
                    35777899**************86 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.083   2.5e+02      72     137 ..     125     190 ..     104     194 .. 0.82
   2 !   14.8   0.3   9.6e-06     0.029      24     145 ..     235     341 ..     224     375 .. 0.63

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.083
      AAA_16  72 laqalareellrqlldeaesaeleawrekleeala..avpelagaeasrllellkrllallsrderp..l 137
                 la+a+a ++++ qll+       +++ ++l+ +l   ++p++ g++a+rl+++++    +++++ rp  +
  KIR64945.1 125 LATAFAGDRYVPQLLRV----RCDRYGDELTVRLLpgQIPDDWGQAAERLAYAFRLRTGQARSTNRPdrV 190
                 78899999999999999....88899999999888889999999999******99999777777777633 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 9.6e-06
      AAA_16  24 pelvllsGesGvGKsslvrellralekd.ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasrlle 121
                 ++ vl+ G+ G+GK s++++l ral +  +  +++ ++ + + +++++a + ++     ++  + ++ +  le++ ++ + ++a           rl+ 
  KIR64945.1 235 GSHVLIAGATGSGKGSVLWSLIRALAAGiRSGLVEVWAFDPKGGMELAAGVPLF---ARFAYDDPDSMAGVLEEAVKRMRVRAA-----------RLRG 319
                 379*******************98888743333444444443333332233333...445555555555555555555555555...........7777 PP

      AAA_16 122 llkrllallsrderp.lvlvlDdlq 145
                 + ++++   +++++p lvlv+D+l 
  KIR64945.1 320 VTRQHV---PTPQDPlLVLVVDELA 341
                 777777...5556666788888775 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.3e-05     0.099      16      59 ..     230     277 ..     219     285 .. 0.71
   2 ?   -1.0   0.0      0.17   5.1e+02     254     299 ..     328     376 ..     324     386 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.3e-05
      DUF853  16 alklanrhGliaGatGtGktvtLqvlaesls....eaGvpvfladvkG 59 
                 +l+l+  h liaGatG Gk   L  l  +l+    +  v v++ d kG
  KIR64945.1 230 RLRLSGSHVLIAGATGSGKGSVLWSLIRALAagirSGLVEVWAFDPKG 277
                 5677889*************9987766666411104446777777777 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.17
      DUF853 254 ldkPklvfffde.ahLLfndapkallekveqvvrLirskG..vGvyfvt 299
                 ++ P lv+  de a L    + + + +++   + L+ s+G  vGv+ v+
  KIR64945.1 328 PQDPLLVLVVDElAALTAYITDRKVRDRIKEALGLLLSQGraVGVHVVA 376
                 67799999999955565667888999***99999999987779999886 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.4e-05       0.1      13      61 ..     228     276 ..     219     281 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.4e-05
       DUF87  13 pvyldlnklvtrHlAilgsTGsGKSntvavLleelle...kkga.tililDpH 61 
                 p +l+l      H++i g TGsGK     +L++ l++   + g+ ++  +Dp 
  KIR64945.1 228 PYRLRL---SGSHVLIAGATGSGKGSVLWSLIRALAAgirS-GLvEVWAFDPK 276
                 555555...457*********************99985532.22366666665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.2e-05      0.12      15      43 ..     227     256 ..     223     263 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.2e-05
      AAA_29  15 htieidlkg.atlltGpsGsGKSTllDAiq 43 
                 + ++++l+g  +l++G++GsGK ++l +++
  KIR64945.1 227 QPYRLRLSGsHVLIAGATGSGKGSVLWSLI 256
                 56678888999***********99886555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3377.61
//
Query:       KIR64946.1  [L=145]
Description: hypothetical protein TK50_05215 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1075.72
//
Query:       KIR64947.1  [L=243]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-18   64.8   0.1      1e-17   64.3   0.1    1.1  1  UTRA      UTRA domain
    3.1e-14   52.4   0.1    6.5e-14   51.3   0.1    1.6  1  GntR      Bacterial regulatory proteins, gntR family
     0.0083   16.5   0.0      0.017   15.4   0.0    1.5  1  Rrf2      Transcriptional regulator
  ------ inclusion threshold ------
      0.014   15.3   0.3      0.049   13.5   0.1    2.0  2  MarR_2    MarR family


Domain annotation for each model (and alignments):
>> UTRA  UTRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.1   2.2e-21     1e-17       5     140 ..      96     234 ..      93     235 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 2.2e-21
                 SEEEEEEEEEEEE--HHHHHHHTS-TTSEEEEEEEEEEETTE.EEEEEEEEEEGGGTTTCH..HHHHHCS-HHHHHHHHHTTSEEEEEEEEEEEE--HH CS
        UTRA   5 epktevlsleevpasaeiaeaLglpagepvlrieRlrladge.pvaleesylpaslvpdll..eedleegslyayleerlgvpitraeetiearladae 100
                 ++++ +l + +vpa++  a aLg+++g+pv+  +Rl ++d++ pv l +++l+ ++++++    +d+  ++l + ++ r  ++++++ e+i+arl++ae
  KIR64947.1  96 RAGSTLLAAGTVPAPPRAAVALGVQPGTPVVARRRLITVDEVgPVELGTAFLSVEMAEGTGvgVQDAMPEGLLRHVASRKRLKFDHVTERISARLPSAE 194
                 578999***********************************88**************9998887777799999999999******************** PP

                 HHHHHTSTTT-EEEEEEEEEEETTSCEEEEEEEEEETTTE CS
        UTRA 101 eaelLgisagspvLviervtydadgrpveysrsyyrgdrf 140
                 ea+lL++ + +pvL++  v  d   +p+  +  + +++r+
  KIR64947.1 195 EAKLLQVRESDPVLTVLLVICDRSATPLLAVDVLLPASRH 234
                 ****************************999999999987 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.1   1.5e-17   6.5e-14       2      64 .]      10      72 ..       9      72 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 1.5e-17
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                y  ++ ++ ++I +g++  G++LPse eL  ef  sr++v +AL+ L + g++e+rqg+G fV
  KIR64947.1 10 YVVIVNAVQQRIEDGTYPLGAMLPSETELIREFRASRPVVVRALDLLRQGGWIESRQGKGRFV 72
                6678999*****************************************************998 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.9e-06     0.017      29      67 ..      36      73 ..      30      78 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.9e-06
                HHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEE CS
        Rrf2 29 eeiaerqnispsylekilakLrkaglvksvrGkgGGyrL 67
                +e+ +++  s++++ + l  Lr+ g+++s++Gk G ++L
  KIR64947.1 36 TELIREFRASRPVVVRALDLLRQGGWIESRQGK-GRFVL 73
                577788899************************.88877 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.1e-05     0.049      25      59 ..      36      68 ..      28      70 .. 0.91
   2 ?   -2.1   0.0      0.85   3.8e+03      38      56 ..     186     204 ..     182     206 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
                HHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSS CS
      MarR_2 25 gelarrlglsksavsrilkrLvaaGLverrpgpeD 59
                +el r+++ s++ v r+l+ L + G++e r g   
  KIR64947.1 36 TELIREFRASRPVVVRALDLLRQGGWIESRQG--K 68
                699*************************9977..4 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.85
                 HHHHHHHHHHTTSEEEEES CS
      MarR_2  38 vsrilkrLvaaGLverrpg 56 
                 +s +l  +++a L++ r++
  KIR64947.1 186 ISARLPSAEEAKLLQVRES 204
                 6777888899999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1883.75
//
Query:       KIR64948.1  [L=97]
Description: hypothetical protein TK50_05230 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 803.23
//
Query:       KIR64949.1  [L=183]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-27   95.0   0.1    7.9e-27   94.6   0.1    1.1  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
    6.2e-11   42.7   0.0    7.3e-11   42.4   0.0    1.0  1  Acetyltransf_4  Acetyltransferase (GNAT) domain
    7.1e-10   39.1   0.0    1.3e-09   38.3   0.0    1.4  1  Acetyltransf_1  Acetyltransferase (GNAT) family
     0.0013   18.4   0.0     0.0047   16.6   0.0    1.7  2  Acetyltransf_8  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.039   13.9   0.0        0.1   12.5   0.0    1.7  1  FR47            FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.1   2.2e-30   7.9e-27       2     138 .]      11     148 ..      11     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 2.2e-30
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmrylpe.pltleeaeewlera..waeeseeegygwaivlkdtgviGsvglrdleeedeeaelgymlapsfwg 93 
                     ++Lr ++++D+++  +++ d +v+r+l+  +++ ++a +++e +   a+  ++++y +a+++  +++iG+++l    ++  +a lgy +  ++wg
      KIR64949.1  11 ITLRDMRSDDAADAWAIVGDDRVTRWLSFdSRDQAAAVAMVEGTiqRAQHTPRTEYYLAVTDATDRMIGFARLGFTGHQ--AAKLGYAISADHWG 103
                     68************99**********55547888888888887744444555566989998777779****99844443..4************* PP

  Acetyltransf_3  94 kGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     +Gyat+a+r +++y f++l+l+r+ a i ++N+aSi+v+e+lG++
      KIR64949.1 104 HGYATDAARTIVDYGFQTLKLHRITAAIGPDNTASITVAERLGMQ 148
                     *******************************************96 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0     2e-14   7.3e-11       1     154 [.      13     167 ..      13     168 .. 0.91

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 2e-14
  Acetyltransf_4   1 iraateeDakeilaiyaeyvvnt..aitfeyevssveefekfleal.dsek.eyvflvae.sdrivGyaylgqfkkrakdwkaelsvylaerdnn 90 
                     +r+++ +Da+   ai+ +++v +   ++ + +  +v ++e  +++   ++  ey + v +  dr++G a+lg f      ++a l + +   d  
      KIR64949.1  13 LRDMRSDDAADAWAIVGDDRVTRwlSFDSRDQAAAVAMVEGTIQRAqHTPRtEYYLAVTDaTDRMIGFARLG-FTG---HQAAKLGYAIS-ADHW 102
                     6999************999999944455556668999********966777699999999************.888...89999999997.8999 PP

  Acetyltransf_4  91 keglgrelidaleqvl.keqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiDmi 154
                       g++ +    ++++  +   +++++a+i  +n++si ++++lG + +g+++++   ng w D++
      KIR64949.1 103 GHGYATDAARTIVDYGfQTLKLHRITAAIGPDNTASITVAERLGMQYEGRLRDHVHTNGAWRDSL 167
                     ***************88********************************************9986 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   3.5e-13   1.3e-09      31     117 .]      60     147 ..      31     147 .. 0.80

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 3.5e-13
                     TTC..EEEEEEET..TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  31 eae..gllvaeed..geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYeklGF 117
                     +++  ++++a  d  ++ iGf++l    +     a+  ++a+s +++g+G+++   ++++++ ++   +++i +a+ +dn+a+i + e+lG+
      KIR64949.1  60 HTPrtEYYLAVTDatDRMIGFARLGFTGH----QAAKLGYAISADHWGHGYATDAARTIVDYGFQTlKLHRITAAIGPDNTASITVAERLGM 147
                     22234555544454599************....56666****************************999*********************95 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.4   1.4e+03      17      49 ..      44      69 ..      28      80 .. 0.48
   2 !   16.6   0.0   1.3e-06    0.0047      89     142 ..      99     152 ..      93     154 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.4
                    CCHHHH-----HHHHHHHHHHHC.STTEEEEEE CS
  Acetyltransf_8 17 rvaewweeagtleevrellakldadphseplig 49
                    ++a++ +       v+ + ++ +++p++e +++
      KIR64949.1 44 QAAAVAM-------VEGTIQRAQHTPRTEYYLA 69
                    3333333.......3333333334444444444 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.3e-06
                     HHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEE CS
  Acetyltransf_8  89 aeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekeke 142
                     a++ g+g++t   r++v+y f+  +  r+ +   ++N+++i + e++G++ e++
      KIR64949.1  99 ADHWGHGYATDAARTIVDYGFQTLKLHRITAAIGPDNTASITVAERLGMQYEGR 152
                     5789*********************************************99876 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.9e-05       0.1      31      78 ..      99     148 ..      88     155 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.9e-05
                 GGG-SSSHHHHHHHHHH.HHHHH.S-S-EEEEEETT-HHHHHHHHHHT-E CS
        FR47  31 pehrrrGlgsrlvkala.keiae.rgktvllvvvasNtpsirlyeklGfe 78 
                  +h + G+++  ++ +  ++  + + + +++ ++++Nt+si + e+lG +
  KIR64949.1  99 ADHWGHGYATDAARTIVdYGFQTlKLHRITAAIGPDNTASITVAERLGMQ 148
                 6788999999999998724566688999********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1429.54
//
Query:       KIR64950.1  [L=122]
Description: hypothetical protein TK50_05245 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.09   13.5   1.9       0.36   11.6   0.1    2.5  3  HEAT_PBS  PBS lyase HEAT-like repeat


Domain annotation for each model (and alignments):
>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1     0.081   1.5e+03      15      25 ..      24      34 ..      17      36 .. 0.67
   2 ?   11.6   0.1     2e-05      0.36       5      24 ..      66      88 ..      64      90 .. 0.89
   3 ?   -2.5   0.0      0.74   1.3e+04       4      22 ..     109     115 ..     108     117 .. 0.54

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.081
                GGGHHHHHHHC CS
    HEAT_PBS 15 eeaipaLleaL 25
                +++++++++a 
  KIR64950.1 24 QQCADLIRAAA 34
                56677766664 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2e-05
                HHHHHHHCTS...GGGHHHHHHH CS
    HEAT_PBS  5 AakaLgqlgd...eeaipaLlea 24
                A+ aLgql+d   eea++ L  a
  KIR64950.1 66 AIDALGQLRDpntEEAVASLADA 88
                899*************9999776 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.74
                 HHHHHHHHCTSGGGHHHHH CS
    HEAT_PBS   4 aAakaLgqlgdeeaipaLl 22 
                 a            a+++L+
  KIR64950.1 109 A------------AVERLR 115
                 3............555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 969.04
//
Query:       KIR64951.1  [L=192]
Description: hypothetical protein TK50_05255 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00072   19.5   0.9        5.9    6.9   0.1    3.6  3  DUF1932          Domain of unknown function (DUF1932)
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.031   14.4   0.0    1.5  1  HNH_2            HNH endonuclease
      0.028   14.5   0.1      0.035   14.2   0.1    1.3  1  Cob_adeno_trans  Cobalamin adenosyltransferase
      0.077   13.1   0.2        7.3    6.7   0.0    2.4  2  Exonuc_VII_S     Exonuclease VII small subunit
      0.096   12.9   0.6        3.1    8.1   0.1    2.3  2  WXG100           Proteins of 100 residues with WXG


Domain annotation for each model (and alignments):
>> DUF1932  Domain of unknown function (DUF1932)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0044        16      29      44 ..      18      33 ..      12      42 .. 0.89
   2 !    6.9   0.1    0.0017       5.9      40      64 ..     125     149 ..      90     154 .. 0.85
   3 ?    3.5   0.0      0.02        70       1      20 [.     168     187 ..     168     191 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0044
                HHHHHHHHHHHHHHHH CS
     DUF1932 29 ltgmppkAyRwveEMe 44
                + g+ pkA R+ +EM 
  KIR64951.1 18 IYGVKPKAARYRAEMT 33
                56889**********5 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHCTTS--HHHHHHH CS
     DUF1932  40 veEMeeiaetlaeeglepqmfraia 64 
                 v+E+++i + +++ g++   +ra+a
  KIR64951.1 125 VRELKQIIAAMSDSGVDTHTARALA 149
                 89**************999999987 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.02
                 HHHTT-HHHHHHHHHHHSST CS
     DUF1932   1 AhrlGVldelldeleeslpa 20 
                 Ah+++Vl+ +l+ +++++  
  KIR64951.1 168 AHAADVLPGILRDMQQTVNR 187
                 9**************99855 PP

>> HNH_2  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   8.8e-06     0.031      13      62 ..      14      52 ..       7      55 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.8e-06
       HNH_2 13 eaAHIiPwslssffndlilnrfeigrillekgstidspsNgllLspdiHk 62
                + AHI+             ++++  ++ ++++++ ds +N+llL+  +H+
  KIR64951.1 14 QIAHIYG-----------VKPKAARYRAEMTPEERDSFANLLLLCLAHHE 52
                6688887...........3334456678999******************7 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   9.8e-06     0.035      62     156 ..      90     191 ..      35     192 .] 0.76

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.8e-06
                      HHHHHHHHHHHT.-BTCCG-S--HHHHHHHHHHHHHHHHHS--EESEEES-SSHHHHHHHHHHHHHHHHHHHH.HHHHHHS............. CS
  Cob_adeno_trans  62 neLfdlgaelatpekkkekkkiteeeveelekeideleaelpplksfilpggspaaaalhvaRtvcRraERav.velaeee............v 142
                      + L++  ae+atp       +++e  +++le+   +  +++ +lk+ i    s +    h aR+++  aE     +l++++            +
       KIR64951.1  90 DVLMNFLAEIATP----PLDRLEEI-TKRLEETGTASAETVRELKQII-AAMSDSGVDTHTARALAYSAEIFSsSDLRQSAqglahaadvlpgI 177
                      5589999999998....34455555.788***99999999**999655.55699999*************876334444335665555545554 PP

                      HHHHHHHHHHHHHH CS
  Cob_adeno_trans 143 eeevlkylNRLSDl 156
                       +++++ +NRLS +
       KIR64951.1 178 LRDMQQTVNRLSQF 191
                      678889******76 PP

>> Exonuc_VII_S  Exonuclease VII small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.002       7.3       5      17 ..     104     116 ..     103     120 .. 0.87
   2 ?    3.9   0.0     0.015        55       3      20 ..     123     140 ..     122     141 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.002
  Exonuc_VII_S   5 laeLeeIvekLEs 17 
                   l++LeeI ++LE+
    KIR64951.1 104 LDRLEEITKRLEE 116
                   68**********7 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.015
  Exonuc_VII_S   3 ealaeLeeIvekLEsgel 20 
                   e++ eL++I++ +++  +
    KIR64951.1 123 ETVRELKQIIAAMSDSGV 140
                   7899*********98765 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.039   1.4e+02       8      38 ..     106     136 ..     104     140 .. 0.70
   2 ?    8.1   0.1   0.00086       3.1       6      38 ..     157     189 ..     155     191 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.039
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG CS
      WXG100   8 elrqaaarfqkqaeeledelqrlkaevdalq 38 
                 +l++  +r+ ++ +   + +++lk+ ++a++
  KIR64951.1 106 RLEEITKRLEETGTASAETVRELKQIIAAMS 136
                 5667777777777777777888888777774 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00086
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG CS
      WXG100   6 peelrqaaarfqkqaeeledelqrlkaevdalq 38 
                  ++lrq+a+ ++ +a+ l ++l++++++v+ l+
  KIR64951.1 157 SSDLRQSAQGLAHAADVLPGILRDMQQTVNRLS 189
                 5789*************************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      652  (0.0363657); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1517.59
//
Query:       KIR64952.1  [L=374]
Description: transposase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-15   57.5   0.0    2.3e-15   56.6   0.0    1.5  1  DDE_3            DDE superfamily endonuclease
    1.2e-13   51.4   1.3    1.2e-13   51.4   1.3    3.8  4  HTH_32           Homeodomain-like domain
    6.2e-12   45.4   0.1    6.2e-12   45.4   0.1    3.2  4  HTH_29           Winged helix-turn helix
    1.5e-07   31.4   3.3    1.4e-06   28.3   0.0    3.2  3  HTH_28           Helix-turn-helix domain
    0.00018   20.6   0.0     0.0011   18.0   0.0    1.9  2  DDE_Tnp_ISAZ013  Rhodopirellula transposase DDE domain
    0.00021   21.5   0.5    0.00094   19.4   0.0    2.1  2  rve              Integrase core domain
     0.0029   17.3   0.0     0.0029   17.3   0.0    4.0  5  HTH_23           Homeodomain-like domain
  ------ inclusion threshold ------
      0.028   14.1   1.7        0.1   12.2   1.7    2.1  1  HTH_33           Winged helix-turn helix


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0     1e-18   2.3e-15       1     140 [.     182     322 ..     182     328 .. 0.89

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 1e-18
       DDE_3   1 rvvfiDEsgfqlgt.vrrrawakkGkrer.leeygr.rgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHksesl 96 
                 rv+ +DE+g      + +++wa+ G   r  ++y++ +g   + g +++ +++   ++  + +a++  + l+ +   +++  +i++ilDn+s Hk  ++
  KIR64952.1 182 RVFAFDEFGPLVIRpRAGTGWAPAGHPHRlPANYHKlHGVRQFHGCYSVGDDQLWGVVRRRKSAANSLAALKSIRAARPDGAPIYVILDNLSAHKGLKI 280
                 57889**9999999899**********9975555551556678899999999999*************************99***************** PP

       DDE_3  97 relveeeadrlellylPpySPelNpiEivwsklkrellkrrsfk 140
                 r++++    ++el ++P+y+++ NpiE  ++ l + ++  ++++
  KIR64952.1 281 RRWAAR--NKVELCFTPTYASWANPIEAQFGPLRTFVIAGSNHP 322
                 ******..**********************99999888766665 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.22     5e+02      25      53 ..       8      35 ..       4      53 .. 0.75
   2 !   51.4   1.3   5.5e-17   1.2e-13       1      73 []      62     144 ..      62     144 .. 0.92
   3 ?   -4.4   0.3         8   1.8e+04       2       8 ..     280     286 ..     280     288 .. 0.74
   4 ?   -1.2   3.4       1.5   3.3e+03       4      47 ..     336     366 ..     330     373 .. 0.52

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.22
      HTH_32 25 rprklsdevrariiallreeprWsprqla 53
                r r+lsd++ +++++++r+  + sp +l+
  KIR64952.1  8 RVRRLSDQEGQQLLRITRRG-TGSPIRLR 35
                56789999999999999554.55555555 PP

  == domain 2  score: 51.4 bits;  conditional E-value: 5.5e-17
      HTH_32   1 TvsrwlkRyneeGlegLkdrprrgrprklsdevrariiallreep........rWsprqlaarl..aeregvkvShstvyriL 73 
                 T++ +++R+ne G++ L++r+ +grpr++s +++a i++++ ++p        rWs r+la++l  ++ + v+v ++  ++iL
  KIR64952.1  62 TIRLVVHRFNEMGMASLDPRWAGGRPRQISLDEEAFIVETANTRPeklgrpftRWSVRKLAEHLgsHAVRRVRVGRERLRQIL 144
                 8999*************************************77899******************764444577****999998 PP

  == domain 3  score: -4.4 bits;  conditional E-value: 8
      HTH_32   2 vsrwlkR 8  
                 ++rw +R
  KIR64952.1 280 IRRWAAR 286
                 6889888 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1.5
      HTH_32   4 rwlkRyneeGlegLkdrprrgrprklsdevrariiallreeprW 47 
                 rw++  n++ ++ L+ ++r  r r  s+++r           rW
  KIR64952.1 336 RWRNA-NARHPDVLAAQRRE-RARIRSERQR-----------RW 366
                 45555.44445555544222.4433333333...........44 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.2      0.16   3.6e+02      31      54 ..       8      32 ..       5      35 .. 0.78
   2 !   45.4   0.1   2.8e-15   6.2e-12       1      60 [.      36      95 ..      36      96 .. 0.96
   3 ?   -2.6   0.3       2.5   5.7e+03      16      31 ..     127     142 ..     118     148 .. 0.49
   4 ?   -3.7   0.5       5.9   1.3e+04      50      62 ..     351     364 ..     345     365 .. 0.58

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.16
      HTH_29 31 rwlkrfeegGlaalld.rrrsgrpr 54
                r++++ +++G + l+  rr++g p 
  KIR64952.1  8 RVRRLSDQEGQQLLRItRRGTGSPI 32
                8999******777777778888876 PP

  == domain 2  score: 45.4 bits;  conditional E-value: 2.8e-15
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn.rlsee 60
                Ra+++l++a G  tv  iA+l++ +++t++ +++rf+e G a+l++r+++grpr   l+ee
  KIR64952.1 36 RAMVVLASAGGN-TVPAIARLVQADEDTIRLVVHRFNEMGMASLDPRWAGGRPRQiSLDEE 95
                9***********.9*****************************************888876 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.5
      HTH_29  16 sqiAkllglsrrtvyr 31 
                 s +++++++ r   + 
  KIR64952.1 127 SHAVRRVRVGRERLRQ 142
                 4445555555444444 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 5.9
      HTH_29  50 sgrprn.rlseeqe 62 
                 ++r r  + se+q+
  KIR64952.1 351 QRRERArIRSERQR 364
                 44555544566665 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   6.2e-10   1.4e-06       2      51 ..      36      87 ..      35      88 .. 0.86
   2 ?    0.3   0.8      0.35   7.9e+02      17      34 ..     128     145 ..     115     148 .. 0.56
   3 ?    1.2   0.9      0.18   4.1e+02       5      32 ..     129     157 ..     127     159 .. 0.68

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 6.2e-10
      HTH_28  2 RleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr..rrp 51
                R+ ++++ a G++v+++Ar+++ +++t++  ++r++e G a+L pr   +rp
  KIR64952.1 36 RAMVVLASAGGNTVPAIARLVQADEDTIRLVVHRFNEMGMASLDPRWagGRP 87
                666778888888**********************************743465 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.35
      HTH_28  17 eaArelgisrrtvyrWik 34 
                  a r++ ++r+++++ ++
  KIR64952.1 128 HAVRRVRVGRERLRQILH 145
                 355666666666666665 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.18
      HTH_28   5 iikllaaGh.svreaArelgisrrtvyrW 32 
                 +++++  G+ + r++ +++ i+ ++ + W
  KIR64952.1 129 AVRRVRVGReRLRQILHRHRITFQRTKTW 157
                 55666656667788888888877777777 PP

>> DDE_Tnp_ISAZ013  Rhodopirellula transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.9e-07    0.0011       6     158 ..      98     246 ..      93     258 .. 0.77
   2 ?    0.1   0.0      0.14   3.2e+02     214     234 ..     288     307 ..     277     322 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.9e-07
  DDE_Tnp_ISAZ013   6 vepetrgdpesp.lrwttkslrklaeeLkeqghk...vsaetvaelLkelgyslqsnrKtkegkkhpdrdaqFekinekvkeaqeagqpvisvd 95 
                      + ++ ++ pe+    +t+ s+rklae+L ++  +   v +e ++++L+++  + q+ +Kt ++++ pdrd +   i++  +++    q v+ +d
       KIR64952.1  98 IVETANTRPEKLgRPFTRWSVRKLAEHLGSHAVRrvrVGRERLRQILHRHRITFQR-TKTWKESTDPDRDVKLARIEQVSSHF---PQRVFAFD 187
                      556667788888789*************999776666**************99997.588888999***********977666...67899999 PP

  DDE_Tnp_ISAZ013  96 tkkkeliGefkrsGkewrpkgepae..vkdhdfvskeegkaipyGiydlaenegwvsvgtdkdta 158
                           +i    r+G+ w p+g+p++  ++ h +          +G y +  +++w  v   k  a
       KIR64952.1 188 EFGPLVI--RPRAGTGWAPAGHPHRlpANYHKLHG----VRQFHGCYSVGDDQLWGVVRRRKSAA 246
                      8877777..46888889999998872234455444....44589999999999887776555544 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.14
  DDE_Tnp_ISAZ013 214 eiqvahfPpgtskwnkiEhRl 234
                      ++++++ P + s  n+iE   
       KIR64952.1 288 KVELCFTPTYASWANPIE-AQ 307
                      799***************.44 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4      0.79   1.8e+03      81     100 ..     132     157 ..      81     161 .. 0.70
   2 !   19.4   0.0   4.2e-07   0.00094      41     113 ..     239     309 ..     233     313 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.79
         rve  81 k......afrefladlgirvsftrpg 100
                 +      ++r++l++++i+ ++t+ +
  KIR64952.1 132 RvrvgreRLRQILHRHRITFQRTKTW 157
                 14444447788888888888887766 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 4.2e-07
         rve  41 alsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdnGkvErfhr 113
                 + + +++a++ la+l+   a +    p +v+ Dn s+ +  ++r+++a+++++++ft+ + ++ n  +E  ++
  KIR64952.1 239 VRR-RKSAANSLAALKSIRAARPDGAPIYVILDNLSAHKGLKIRRWAARNKVELCFTPTYASWANP-IEAQFG 309
                 344.4477777777777666666656**************************************97.466555 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.3e-06    0.0029       5      49 ..      34      78 ..      31      79 .. 0.88
   2 ?    0.3   0.0      0.29   6.6e+02      17      28 ..     115     126 ..     111     134 .. 0.91
   3 ?    0.3   0.7      0.28   6.4e+02      20      37 ..     137     154 ..     127     163 .. 0.66
   4 ?   -2.7   0.0       2.6   5.9e+03      17      27 ..     277     287 ..     268     289 .. 0.63
   5 ?   -3.2   0.7       3.6     8e+03       3      15 ..     351     363 ..     349     374 .] 0.57

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.3e-06
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegl 49
                ++R+ ++l+ a G +v++IAr+    + T++ +++r++e G ++l
  KIR64952.1 34 LRRAMVVLASAGGNTVPAIARLVQADEDTIRLVVHRFNEMGMASL 78
                577777788888***************************997766 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.29
      HTH_23  17 GlsvreIAreLg 28 
                 ++svr+ A++Lg
  KIR64952.1 115 RWSVRKLAEHLG 126
                 79********98 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.28
      HTH_23  20 vreIAreLgvsrrTvyrw 37 
                 +++  ++L+++r T +r 
  KIR64952.1 137 RERLRQILHRHRITFQRT 154
                 555557788888888887 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 2.6
      HTH_23  17 GlsvreIAreL 27 
                 Gl +r+ A++ 
  KIR64952.1 277 GLKIRRWAARN 287
                 66666666655 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 3.6
      HTH_23   3 sereRlrilllla 15 
                 + reR+ri    +
  KIR64952.1 351 QRRERARIRSERQ 363
                 5677887744444 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.7   4.6e-05       0.1       2      44 ..     113     157 ..     112     165 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.6e-05
      HTH_33   2 fgrWtlarlaqlieerf..gvsysvsgvyrlLkrlGfsyqkPrpr 44 
                 f+rW+++ la+++      +v++ + +++++L+r+ +++q+++ +
  KIR64952.1 113 FTRWSVRKLAEHLGSHAvrRVRVGRERLRQILHRHRITFQRTKTW 157
                 88999999999998764338999******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2901.70
//
Query:       KIR64953.1  [L=105]
Description: hypothetical protein TK50_05265 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 739.80
//
Query:       KIR64954.1  [L=64]
Description: hypothetical protein TK50_05275 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.091   12.6   0.0       0.15   11.9   0.0    1.3  1  WH2       WH2 motif


Domain annotation for each model (and alignments):
>> WH2  WH2 motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.4e-06      0.15       1      15 [.      10      24 ..      10      26 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.4e-06
                X-TCCHHHHHHHHHH CS
         WH2  1 ggggRgALLadIraG 15
                +++ R+ALL +I  G
  KIR64954.1 10 PDAVRDALLKAIKRG 24
                5789*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 478.23
//
Query:       KIR64955.1  [L=184]
Description: hypothetical protein TK50_05280 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1443.88
//
Query:       KIR64956.1  [L=512]
Description: cellulose-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-31  108.7   4.4    5.7e-31  108.0   4.4    1.3  1  Cellulase  Cellulase (glycosyl hydrolase family 5)
    1.9e-29  101.9  15.5    1.9e-29  101.9  15.5    2.4  2  CBM_2      Cellulose binding domain


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   4.4   6.4e-35   5.7e-31      12     279 ..     211     478 ..     194     480 .. 0.80

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 6.4e-35
                 EECETTSCGGSHHHHHHHHHHHT-SEEEEEEE...CTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESSTTTCSSSSTTTTHHHHHHH... CS
   Cellulase  12 glstswgnpyttkalidevkdagfntvRlpvs...wgelvenapdykvdenslerveevvkyakenglyvildiHseegwltkadgnssedtaeef... 104
                 g  ++ ++p   +a   ++k++++ +vR+p+    w +l   +p++   +++ + v++ v++  +ng+  ild+H + g +t + + + + +a+ +   
  KIR64956.1 211 GKGMWDSGP-VDQASVNAMKAWNIRAVRIPLNedcWLGLS-GSPSG---ATYQQAVKDYVNLLVANGINPILDLHWTHGQYTGNISACADVNATCQkpm 304
                 444444444.7899999**************977787777.46665...9**************************94444444444444332222232 PP

                 .....HHHHHHHHHHHHTTTTTTEEEESSSS--STTCT......CCT........CHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHHHHTBHHHHHC CS
   Cellulase 105 .....fkklwtqiAerykkndevvifelmNEPhgnntg......aew........tseeadevkayaeeaikaIRavgpnrliivegnswsgnldgavl 184
                        ++wt +A+ + k ++ v+f+l+NEP++  ++      a w        ++  + ev+ + +  ++a+Ra+g+ ++++v g +w+++l++  +
  KIR64956.1 305 psmqhTPQFWTGVANAF-KGNNAVVFDLFNEPYPDAANnwsdmaAAWrclrdggtCTGITYEVAGM-QDLVDAVRATGAGNVLLVAGLTWTNDLSQWLN 401
                 322224459********.8889999*********76667777776668888876555556677777.*****************************555 PP

                 TSGSSSSTTEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTSSHHHHHHHHHHHHHHHHTTTEEEEEEESS CS
   Cellulase 185 ndPndsqdnliysvHfYgpsdfaqtefgkdltdktnlaqrledaakylvekgipviigEfGgsnadgdlakeeaekwldylkekgiswiyWslnp 279
                  +Pnd+ +n+++s H+Y+                 ++ +++++ ++ +  + +pv +gE G +++      ++ ++++++l++k+i+++ W++np
  KIR64956.1 402 YKPNDPLNNIVASWHSYNFNA-------------CVTVSCWDSQIGAVAAQ-VPVHAGEIGQDTCAH----DYIDQVMTWLDSKRIGYTAWTWNP 478
                 59****************333.............45689*****9988775.9********866666....**********************97 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9  15.5   2.1e-33   1.9e-29       1     101 []      35     135 ..      35     135 .. 0.97
   2 ?   -3.0   0.2       1.1   9.6e+03      36      55 ..     479     498 ..     470     508 .. 0.60

  Alignments for each domain:
  == domain 1  score: 101.9 bits;  conditional E-value: 2.1e-33
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE-.-TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETT CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtl.pagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnG 98 
                 +++ y+v+s+W +Gf+++++++N gs++ +gWt+++++ ++gq+vtq W+at+sqsG++v+a +++wNg++ +Ggs+ +Gf+gs++gsn+ ptsf++nG
  KIR64956.1  35 CSVAYTVQSQWTGGFSGNIAITNLGSAV-TGWTLTFDFpTSGQQVTQGWSATWSQSGTRVSAASLGWNGSLGTGGSTAIGFNGSWSGSNPVPTSFALNG 132
                 889**********************987.69*******6689********************************************************* PP

                 EE- CS
       CBM_2  99 aaC 101
                 ++C
  KIR64956.1 133 TTC 135
                 **9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.1
                 EE--TTEEEEEEESEEEEEE CS
       CBM_2  36 wtlpagqrvtqlWnatvsqs 55 
                 w  + g+ + q +n+t +++
  KIR64956.1 479 WGCSGGNVLIQDYNGTPTST 498
                 67777777777777765443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3425.49
//
Query:       KIR64957.1  [L=281]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-28  100.0   1.5    5.2e-28   98.4   0.4    1.9  2  Peripla_BP_3   Periplasmic binding protein-like domain
    6.4e-18   65.2   0.0    7.3e-18   65.0   0.0    1.0  1  Peripla_BP_1   Periplasmic binding proteins and sugar binding
  ------ inclusion threshold ------
      0.074   13.2   0.0       0.17   12.0   0.0    1.6  2  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.11   6.8e+02      32      92 ..      30      83 ..      20      92 .. 0.57
   2 !   98.4   0.4   8.8e-32   5.2e-28       1     166 []     116     273 ..     116     273 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.11
                  HHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEESSCCHHHHHHHH CS
  Peripla_BP_3 32 gfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalPtAviaasDelAlgvlqa 92
                  g ++ l+e+g  +  ++va++ +++ aa+r++    +l    l++Av+  +  +     ++
    KIR64957.1 30 GIEERLAEHGRSVLLHIVADHAAEI-AAYRRWA---QLR---LAEAVVLVNPTAGDPRPAV 83
                  5667777888887777665555544.4555555...221...3356666555555555555 PP

  == domain 2  score: 98.4 bits;  conditional E-value: 8.8e-32
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC..-SEEEEESSCCHHHHHHHHHCC CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaa..lPtAviaasDelAlgvlqalre 95 
                   v+hL+ lGhrria i+  g++++++ + r++++  a+  +g++  +  ++  ++++ a++ a+l    l   +  +P A+i  +D +A+g l ++ e
    KIR64957.1 116 VAHLAGLGHRRIARIS--GPDTLRHTRTRTAALLAAAGPAGIDAVVLTGDYSEESG-ADLTARL----LR--DgdPPSAIIYDNDLMAVGGLDVAGE 203
                   78**************..999**********************9988776666654.4445444....23..3449********************* PP

                   TT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--.EEE--GGG CS
  Peripla_BP_3  96 aglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllpp.elveReSt 166
                    gl+vP+dls+++ dds+l++ls P+lTt+++++++ G+ +a  +l+ll  + ap +++  p+ ++++R++t
    KIR64957.1 204 LGLTVPRDLSLLAWDDSSLCRLSAPQLTTMSLDVHDFGELVAGSVLALL--DGAPVRERWCPTeTVIVRQTT 273
                   *************************************************..78888888877779*****98 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   1.2e-21   7.3e-18       3     215 ..       6     216 ..       4     250 .. 0.83

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 1.2e-21
                   EEEEEES-T.....TSHHHHHHHHHHHHHHHHHTEEEEE.EE-SSHHHHHHHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TT CS
  Peripla_BP_1   3 klglvlpql.....dePffldlvkgitkaakehgvdvll.laageeedlakaidllkakgidgliiatsdtsfdditakaesgipvialedaidapd 93 
                   ++glvl+        ePff++ ++gi++ ++ehg+ vll + a+  +++a++ +  + + ++++++  ++   ++     e g+pv+ +++  d   
    KIR64957.1   6 AVGLVLARAprllgAEPFFMEFISGIEERLAEHGRSVLLhIVADHAAEIAAYRRWAQLRLAEAVVLVNPTAGDPRPAVLRELGLPVVVAGEP-DG-- 99 
                   6777776665667789*******************9987577788888999999999999******976666577777777899******99.43.. PP

                   TS-EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-.TT-SEEE-SSH CS
  Peripla_BP_1  94 gvPcvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh.Peidaivaind 189
                   + P v+ dd      +  +L   gh+r ia ++gp+    ++ r+   laa   aG    d  v++g+ + e +a++   ll+ + P  +ai+ +nd
    KIR64957.1 100 DAPAVRRDDVGSVRAAVAHLAGLGHRR-IARISGPDTLRHTRTRTAALLAAAGPAGI---DAVVLTGDYSEESGADLTARLLRDGdPP-SAIIYDND 191
                   47*************************.*****************778888888888...999***********************55.5******* PP

                   HHHHHHHHHHHHTT.--GGGEEEEEE CS
  Peripla_BP_1 190 eaalGavlalkkeGrlkikeevdsfi 215
                    +a+G+  ++   G l  + +     
    KIR64957.1 192 LMAVGGLDVAGELG-LTVPRDLSLLA 216
                   *****999998888.87777774444 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.74   4.4e+03      34      62 ..      76      98 ..      44     125 .. 0.53
   2 ?   12.0   0.0   2.9e-05      0.17      12      57 ..     139     186 ..     133     220 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.74
  Metallophos_2 34 aGDleeeepevleellelapvlaVrGNnD 62
                   aGD     p vl+el      ++V G  D
     KIR64957.1 76 AGD---PRPAVLRELGL---PVVVAGEPD 98
                   344...44433333332...455555555 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 2.9e-05
  Metallophos_2  12 nldaleavlealkevgvdaiihaGDl.eeeepevleellela.pvlaV 57 
                     + +++a+l+a+  +g+da++++GD+ ee+  + +++ll+   p  a+
     KIR64957.1 139 TRTRTAALLAAAGPAGIDAVVLTGDYsEESGADLTARLLRDGdPPSAI 186
                    67789999******************8888888999888866655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2085.91
//
Query:       KIR64958.1  [L=288]
Description: AraC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-17   63.7   0.0      3e-17   63.3   0.0    1.2  1  GyrI-like  GyrI-like small molecule binding domain
    1.4e-16   60.5   1.5    2.3e-16   59.8   1.5    1.4  1  HTH_18     Helix-turn-helix domain
    2.8e-12   47.0   0.0    3.9e-12   46.6   0.0    1.2  1  Cass2      Integron-associated effector binding protein
    8.8e-07   28.9   0.0    0.00067   19.7   0.0    2.4  2  HTH_AraC   Bacterial regulatory helix-turn-helix proteins, Ar


Domain annotation for each model (and alignments):
>> GyrI-like  GyrI-like small molecule binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   6.8e-21     3e-17       1     154 [.     126     283 ..     126     284 .. 0.88

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 6.8e-21
                 .CEEEEEE--EEEEEEEEEEEHCCCHH...HHHHHHHHHHHHHHHHCTT..--SSEEEEEEEEE-..STTCCCEEEEEEEECCCCCCGBTTSEEEEE-S CS
   GyrI-like   1 meveivelpafrvvgirhrgdyneegg...ipklweelyawaseiklsn..avspligvssdepe..etedeelkydigvtveirvegpeglefleipa 92 
                 m ++i e++af++vg ++r++  +eg    i +++ ++ a   e+   +  + ++ i  +sd  +   +e+ el+y ++v++ +   +p +l+ + +pa
  KIR64958.1 126 MRYRIAEKDAFHLVGRKARVPLVHEGLnpaIVAFVKSIDAGTTERIAALsdQEPQGIVNVSDKLGvnREEGAELDYWHAVVTAA--IPPRDLDAMPVPA 222
                 789*********************998999888888888888888877788666666666666778888889999999999988..************* PP

                 EEEEEEEEECEG.GGHHHHHHHHHHTHHHHTT-EEEESEEEEEEECCCTSSCGCEEEEEEEEE CS
   GyrI-like  93 geyAvfrhkGpy.ddlqatyaklygewlpesgyerrdgpsiEiYlsdprereeelkteiyipv 154
                 g++Avf+  G++  +lq+ ++++++ew+p++ y  r++p  E+ + +   + + ++ e+++pv
  KIR64958.1 223 GTWAVFSSSGEFpQALQHLWRDVFTEWFPSNPY--RSRPGPEMLRARVSSDGSRADAELWVPV 283
                 *********************************..88888888877765599**********9 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   1.5   5.2e-20   2.3e-16       1      80 [.      25     103 ..      25     104 .. 0.97

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 5.2e-20
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 la+ +  s+ +++r+f +  g++ +ey+rr+Rl  A ++ l   ++++ +iAl++G+++  +F+raf++++g+ P+e rr
  KIR64958.1  25 LARIAVTSEHHFRRMFSALAGMPLSEYVRRRRLTVAAAEVLA-GERTLLDIALRYGYGSGEAFARAFQAVHGVGPGEARR 103
                 799999***********************************6.***********************************98 PP

>> Cass2  Integron-associated effector binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   8.6e-16   3.9e-12       1     149 []     129     283 ..     129     283 .. 0.86

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 8.6e-16
                 EEEEE--EEEEEEEEETTCCCCH...HHHHHHHHHHHHH..HHCTTSBSTEEEEEEEC-TT.....-CCGEEEEEEEEE-TTSSS-TT-EEEEE--EEE CS
       Cass2   1 rIvelpeftvaGiryegskeeedlnkeigklwreflekg..rlkkikkdkrvfgiyhdyes.....eenkfsyyagvevpsdsevpeglvkkeiPggkY 92 
                 rI e+++f+++G + +++  +e ln  i  + + + +    r+  ++ +     ++++ +      e+++++y+ +v++    + p++l  + +P+g+ 
  KIR64958.1 129 RIAEKDAFHLVGRKARVPLVHEGLNPAIVAFVKSIDAGTteRIAALSDQEPQGIVNVSDKLgvnreEGAELDYWHAVVTAA--IPPRDLDAMPVPAGTW 225
                 799********************9999999999998877778888877766666666665578887899999999999999..**************** PP

                 EEEEEESSSTT-HHHHHHHHHHCHCCHCTEEE-SSEEEEEESTTHHH.TEEEEEEEEE CS
       Cass2  93 avftiegdfeedlaeaweaiygellpnsnyerrggpdfEvykeepae.kseielyIPv 149
                 avf++ g+f+++l+ +w+ ++ e++p+++y+ r gp++   +   ++   + el++Pv
  KIR64958.1 226 AVFSSSGEFPQALQHLWRDVFTEWFPSNPYRSRPGPEMLRARVSSDGsRADAELWVPV 283
                 ********************************99997555544444468899****98 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0016       7.3       4      40 ..      15      51 ..      13      53 .. 0.88
   2 !   19.7   0.0   1.5e-07   0.00067       9      41 ..      69     102 ..      64     103 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0016
                CCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHH CS
    HTH_AraC  4 nlstnltiediAdelgfSrsyFsrlFkketGmtPsqy 40
                +l++++ ++++A  + +S+ +F+r F++  Gm  s+y
  KIR64958.1 15 HLDQRIEVGELARIAVTSEHHFRRMFSALAGMPLSEY 51
                7889999*******************99988876666 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 1.5e-07
                 --HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   9 ltiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                  t+ diA  +g+ S   F r+F+++ G+ P + r
  KIR64958.1  69 RTLLDIALRYGYgSGEAFARAFQAVHGVGPGEAR 102
                 599***************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2412.01
//
Query:       KIR64959.1  [L=282]
Description: nucleoside-diphosphate sugar epimerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-23   82.6   4.4    5.2e-23   81.9   4.4    1.3  1  NAD_binding_10   NAD(P)H-binding
      2e-22   79.9   0.2    2.5e-22   79.6   0.2    1.1  1  NmrA             NmrA-like family
    2.1e-07   30.3   0.1    3.9e-07   29.4   0.1    1.4  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    2.2e-07   31.2   0.2    4.5e-07   30.2   0.2    1.5  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    1.6e-05   24.5   0.5    4.4e-05   23.1   0.5    1.8  1  Epimerase        NAD dependent epimerase/dehydratase family
    2.2e-05   24.5   1.4    7.8e-05   22.7   0.4    2.2  2  KR               KR domain
    0.00085   18.5   2.1      0.015   14.4   0.1    2.8  2  RmlD_sub_bind    RmlD substrate binding domain
     0.0019   17.4   0.1     0.0041   16.3   0.1    1.6  2  NAD_binding_4    Male sterility protein
     0.0023   18.2   0.2     0.0053   17.0   0.2    1.7  1  TrkA_N           TrkA-N domain
  ------ inclusion threshold ------
      0.033   14.8   0.1       0.15   12.7   0.0    2.1  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
       0.14   12.3   2.7       0.38   10.9   0.9    2.6  2  DapB_N           Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   4.4   3.2e-26   5.2e-23       1     182 [.       7     184 ..       7     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 3.2e-26
                     TTTSHHHHHHHHHHHHC-..T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---T.CCHHHHHHHHHHHHHHCT--E CS
  NAD_binding_10   1 GAtGkvGrllvkellarg..ghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggg.gkdeegaknivdaakeagvkR 92 
                     GAtG+ G+l+v+ ll+rg    e++al R++ kla+l+   g+++ ++d td+e+l+ a++gad  ++  g++ g++ +++ n+v+aa+eagv  
      KIR64959.1   7 GATGHLGQLIVAALLRRGvpAGEIVALGRDAGKLADLA-GHGVNTRQVDYTDPESLRTAFAGADKLMFVSGSEvGQRVTQHHNVVAAAREAGVGL 100
                     9*****************99889**************8.68***********************8766665551558889*************** PP

                     EEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE-ST--SEEEE....ETTSS---..-EEEHHHHHHHHHHHC CS
  NAD_binding_10  93 fvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggLtdepttkyrvv....ekgepfkg..gsisradVAdvlvavl 181
                     +v+ s ++++++  g    +        + ++ a e+++ asgl ++i+r g+  ++ t++  +       g   +g  +  +rad A++++a+l
      KIR64959.1 101 VVYTSIANADRS--G---MV-------LAGEHLATEREIAASGLPYVILRNGWYLENYTGQLSTYlqfgVTGAAGDGrvSAATRADFAEAAAAAL 183
                     *********952..2...22.......346899********************999877766655333222333223225789*******99998 PP

                     T CS
  NAD_binding_10 182 d 182
                     +
      KIR64959.1 184 T 184
                     6 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.2   1.6e-25   2.5e-22       1     232 [.       3     220 ..       3     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 1.6e-25
                 EEESSTTSHHHHHHHHHHHHHT-E...EEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG.S-HHHHHHHHHHHHHHHS-S CS
        NmrA   1 IlviGaTGrqGksvvrallkaghk...vralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy.skeiedgkklvdAakeaGvk 95 
                 I+v+GaTG++G+ +v+all++g +   + al Rd    +++ l+  Gv++ + d  d esl++a+ g+d  ++v g+  ++ + +  ++v+Aa eaGv 
  KIR64959.1   3 IVVTGATGHLGQLIVAALLRRGVPageIVALGRDA--GKLADLAGHGVNTRQVDYTDPESLRTAFAGADKLMFVSGSEvGQRVTQHHNVVAAAREAGVG 99 
                 89******************888633378888886..56889***************************9888888778******************** PP

                 EEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHHH CS
        NmrA  96 hfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvikil 194
                  ++y s+++++ rs +  +a +h +     e+ + a+g+py +++ g + en+++ l +     ++ +       g+g ++a+   + +D +++ +++l
  KIR64959.1 100 LVVYTSIANAD-RS-GMVLAGEHLA----TEREIAASGLPYVILRNGWYLENYTGQLST----YLQFG--VTGAAGDGRVSAA---TRADFAEAAAAAL 183
                 *********99.77.3444666665....69999*********************8888....22222..2346788886555...56*********** PP

                 HHHHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS-EEEE CS
        NmrA 195 kdprklkgkriklagntlsgneivelfekkigktvkYt 232
                    ++++ ++++l g   +++e++e  ++++g  v Yt
  KIR64959.1 184 TGAAETN-RVYELGGAAFTLTELAEEVSRQTGHAVGYT 220
                 9998875.567999**********************97 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1   2.4e-10   3.9e-07       1     119 [.       4     109 ..       4     127 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 2.4e-10
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrnv 99 
                 vvtG++G lG+ +v +L+r++      ++ l  +  +l +l   +v+ + ++D td ++l+ a  g+d ++++ s ++v +++t+           +nv
  KIR64959.1   4 VVTGATGHLGQLIVAALLRRGV-PAGEIVALGRDAGKLADLAGHGVN-TRQVDYTDPESLRTAFAGADKLMFV-SGSEVGQRVTQH----------HNV 89 
                 8********************5.555555556666666788888888.88**********************9.667777756655..........9** PP

   3Beta_HSD 100 leacvkagvrvlvYtSsaev 119
                 ++a+++agv  +vYtS a++
  KIR64959.1  90 VAAAREAGVGLVVYTSIANA 109
                 ****************8875 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.2   2.8e-10   4.5e-07       1     127 [.       3     132 ..       3     135 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 2.8e-10
                      EEEE--.SHHHHHHHHHHHCTCCT-G.EEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGG......GHHHHH CS
  Sacchrp_dh_NADP   1 vliiGa.GsvGqavaellarhfdvda.eitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppi......ssldvl 86 
                      +++ Ga G  Gq ++  l+r++  +a ei+  +r+  kl+ l    +g  ++++++d  ++e+ L  + +++d ++ +s++       ++ +v+
       KIR64959.1   3 IVVTGAtGHLGQLIVAALLRRGV-PAgEIVALGRDAGKLADL----AGHGVNTRQVDYTDPES-LRTAFAGADKLMFVSGSEvgqrvtQHHNVV 90 
                      7999*****************96.556***********8777....5999*************.********8888888776667788****** PP

                      HHHHHHT-EEEE.SS-BCGCCSCHCCSHHHHHTHHHHHHCTS CS
  Sacchrp_dh_NADP  87 kaCietgvhyvd.tsiskeertnyalreavlklkekakeagv 127
                      +a++e+gv  v  tsi ++ r+   l  + l+ +++ +++g 
       KIR64959.1  91 AAAREAGVGLVVyTSIANADRSGMVLAGEHLATEREIAASGL 132
                      ********88877****************9999999998886 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.5   2.7e-08   4.4e-05       1      71 [.       3      74 ..       3     111 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2.7e-08
                EEEETTTSHHHHHHHHHHHHCT...SEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE- CS
   Epimerase  1 ilVtGatGfiGsalvkallekg...yevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihl 71
                i+VtGatG +G+ +v all++g    e+++l r+  + +  + + ++  ++d+td+++l+ +f+  ++d  + +
  KIR64959.1  3 IVVTGATGHLGQLIVAALLRRGvpaGEIVALGRDAGKLADLAGHGVNTRQVDYTDPESLRTAFA--GADKLMFV 74
                89********************99888******9555555555555*****************9..67766555 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.4   4.8e-08   7.8e-05       3      77 ..       3      70 ..       2      76 .. 0.85
   2 ?   -0.5   0.0      0.61   9.9e+02      90     118 ..     160     188 ..     144     203 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.8e-08
                EEEETTTSHHHHHHHHHHHHHH..S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHH CS
          KR  3 ylitGGlGgLGlelarwlaekg..arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeika 77
                 ++tG++G+LG+ ++  l+++g  a ++v l+R+a        ++a l+ +   v+++++D +d+++++++++ +++
  KIR64959.1  3 IVVTGATGHLGQLIVAALLRRGvpAGEIVALGRDAG-------KLADLAGH--GVNTRQVDYTDPESLRTAFAGADK 70
                58********************999*********43.......56666655..567889999*****9999988765 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.61
                 -------TTT--HHHHHHHHTTTTHHHHH CS
          KR  90 gvlrdklleemtaedleqvlapKvkGawn 118
                 g++ d+ ++  t +d++++ a+ ++Ga  
  KIR64959.1 160 GAAGDGRVSAATRADFAEAAAAALTGAAE 188
                 66678888899999999999998888865 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   9.1e-06     0.015       1      51 [.       1      69 [.       1     105 [. 0.89
   2 ?    2.9   0.3      0.03        48     130     232 ..     121     214 ..     117     238 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.1e-06
                   EEEEEESTTSHHHHHHHHHCTTTSE...EEEEE-TT...............T--TTSHHHHHHHHHHH- CS
  RmlD_sub_bind  1 mkilvtGanGqlGseLakqlaeegl...evlaltre...............eldltdaeavaellkeak 51
                   m i+vtGa+G lG+ ++++l ++g+   e++al+r+               ++d td+e+++++++ a+
     KIR64959.1  1 MSIVVTGATGHLGQLIVAALLRRGVpagEIVALGRDagkladlaghgvntrQVDYTDPESLRTAFAGAD 69
                   789***********9999999988755589***9999************************99997665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.03
                    HHHHHHHHHH-SSEEEEEE-SEESSSSS-HHHHHHHHHHH-SEEEEESS-EE--EEHHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHHHHH CS
  RmlD_sub_bind 130 laGEqavlaagkkalivRtswvygekgknfvktmlrlakereelkvvaDqlgsPTsardlAevllqllekaaeekelagvyHlanegetswlefAr 225
                    la E+ ++a+g  ++i+R +w + ++  ++ + ++       +    + ++ + T  +d Ae+ +++l+ aae   +++vy l++++  +  e+A+
     KIR64959.1 121 LATEREIAASGLPYVILRNGWYLENYTGQLSTYLQ----FGVTGAAGDGRVSAAT-RADFAEAAAAALTGAAE---TNRVYELGGAA-FTLTELAE 207
                    56788888888888888888866555444332222....1111122222222222.33445555555555554...56666666665.66666666 PP

                    HHHHHHC CS
  RmlD_sub_bind 226 ailkeag 232
                    ++ +++g
     KIR64959.1 208 EVSRQTG 214
                    6666665 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.5e-06    0.0041       1      32 [.       5      37 ..       5      76 .. 0.88
   2 ?   -3.2   0.0       2.3   3.8e+03     192     204 ..     128     140 ..     117     153 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.5e-06
                   EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SS CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpev.kiyllvRak 32
                   +TGaTG LG+ +++ LLr+     +i++l R  
     KIR64959.1  5 VTGATGHLGQLIVAALLRRGVPAgEIVALGRDA 37
                   7*****************988888999998854 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.3
                    HHH---EEEEEE- CS
  NAD_binding_4 192 rrsglpvvivRps 204
                      sglp vi+R +
     KIR64959.1 128 AASGLPYVILRNG 140
                    3579999999977 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   3.3e-06    0.0053       1      59 [.       3      65 ..       3     115 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.3e-06
                EEEES.-SHHHHHHHHHHHHTT....EEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTT CS
      TrkA_N  1 iiiiG.lGrvGrslaeeLsegg....kdvvvidkdeerveelreeglevvvgdatdeevLeeag 59
                i++ G  G +G+ ++  L ++g    + +v+  +d  +++ l+ +g+++ + d+td+e L+ a 
  KIR64959.1  3 IVVTGaTGHLGQLIVAALLRRGvpagE-IVALGRDAGKLADLAGHGVNTRQVDYTDPESLRTAF 65
                567775699***********7779966.********************************9983 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     9e-05      0.15       6      54 ..       8      54 ..       2      63 .. 0.86
   2 ?   -1.4   0.0       2.3   3.8e+03      42      78 ..     205     244 ..     166     258 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9e-05
                   TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECEC CS
  F420_oxidored  6 GaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavd 54
                   ++G++g+ ++  ll++g+++ eiv a  r+  k++ la + gv++ +vd
     KIR64959.1  8 ATGHLGQLIVAALLRRGVPAGEIV-ALGRDAGKLADLAGH-GVNTRQVD 54
                   58**********************.99*********9987.56666665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.3
                    HHHHHC...-EEECECHHHHHHH-SEEEE-S-HHHHHHHH CS
  F420_oxidored  42 laeelg...vkvtavdneeaaeeadvvvlavkpedveevl 78 
                    laee++     + + +   a + ++v+v a  pe +++vl
     KIR64959.1 205 LAEEVSrqtGHAVGYTDLPAEKFTEVLVSAGLPEGFAAVL 244
                    3333332222333334444444555555555555555555 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.9   0.00023      0.38       1      54 [.       1      47 [.       1     109 [. 0.72
   2 ?   -0.4   0.0      0.73   1.2e+03      11      36 ..     166     191 ..     155     245 .. 0.41

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00023
                EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S CS
      DapB_N  1 ikvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklg 54
                ++++v+Ga+G +G+ +v a+ + +++  +  v         +dag+l++l  +g
  KIR64959.1  1 MSIVVTGATGHLGQLIVAALLR-RGVPAGEIVALG------RDAGKLADLAGHG 47
                78****************9998.444333333332......2444444444444 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.73
                 HHHHHHHHHHHHSTTEEEEEEEETTC CS
      DapB_N  11 rmGkevvkaveeaedlelvaavdrke 36 
                 r+  +      ea+ + l++a ++++
  KIR64959.1 166 RVSAATRADFAEAAAAALTGAAETNR 191
                 44444444444444445555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2378.18
//
Query:       KIR64960.1  [L=118]
Description: HxlR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-29   99.3   0.0    9.5e-29   99.1   0.0    1.0  1  HxlR       HxlR-like helix-turn-helix
    0.00011   22.0   0.1    0.00017   21.4   0.1    1.2  1  MarR       MarR family
    0.00019   21.3   0.2    0.00032   20.5   0.2    1.4  1  MarR_2     MarR family
     0.0019   18.2   0.1     0.0029   17.6   0.1    1.4  1  HTH_20     Helix-turn-helix domain
     0.0039   16.7   0.0     0.0058   16.2   0.0    1.3  1  HTH_47     winged helix-turn-helix
     0.0051   16.8   0.0     0.0066   16.4   0.0    1.3  1  PadR       Transcriptional regulator PadR-like family
  ------ inclusion threshold ------
      0.035   14.5   0.0      0.056   13.8   0.0    1.3  1  Rrf2       Transcriptional regulator
      0.071   13.1   0.1       0.11   12.5   0.1    1.3  1  HTH_12     Ribonuclease R winged-helix domain
       0.08   12.9   0.1       0.15   12.1   0.1    1.4  1  HTH_Crp_2  Crp-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   0.0   4.8e-32   9.5e-29       2      88 ..      19     105 ..      18     108 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.1 bits;  conditional E-value: 4.8e-32
                 HHSTTHHHHHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHHHHHHHHHH CS
        HxlR   2 iggkWkllilvellkgkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelkkwgeeyle 88 
                 ig++W++l++ +l +g kRfsel+r++ ++sqkmL+q+Lr Le+dgli r++y +vPp+v+Y lt  Grsl +++  l++w++++l 
  KIR64960.1  19 IGDRWSVLVVLTLADGGKRFSELARRIEGVSQKMLTQTLRGLERDGLITRTAYATVPPRVDYALTGLGRSLLDLVGGLEAWATTHLG 105
                 89********************************************************************************99876 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   8.6e-08   0.00017      16      50 ..      34      69 ..      22      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 8.6e-08
                TTEEHHHHHHHH.TS-HHHHHHHHHHHHHTTSEEEE CS
        MarR 16 gplsvseLakkl.gvskstvtrvldrLekkGlieRs 50
                g+ + seLa+++ gvs+ ++t +l+ Le++Gli+R+
  KIR64960.1 34 GGKRFSELARRIeGVSQKMLTQTLRGLERDGLITRT 69
                568999***99857*********************8 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   1.6e-07   0.00032       7      55 ..      22      70 ..      16      73 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.6e-07
                HHHHHHHHHCTTTSEEEHHHHHHHH.TSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2  7 qarvLaaLgrrpgrdltvgelarrl.glsksavsrilkrLvaaGLverrp 55
                 + vL +L  ++g++ + +elarr  g+s+  ++++l+ L++ GL++r++
  KIR64960.1 22 RWSVLVVLTLADGGK-RFSELARRIeGVSQKMLTQTLRGLERDGLITRTA 70
                699**********99.*******8869********************985 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.4e-06    0.0029      21      57 ..      32      69 ..      11      70 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.4e-06
                TCTTB-HHHHHHHH.TS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 21 raegltaselaerl.dlskntlsyHLrvLeeagLvevv 57
                 ++g  +sela+r+ ++s++ l + Lr Le+ gL++++
  KIR64960.1 32 ADGGKRFSELARRIeGVSQKMLTQTLRGLERDGLITRT 69
                6777779*******8899999**************986 PP

>> HTH_47  winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.9e-06    0.0058      35      77 ..      24      67 ..      10      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.9e-06
                HHHHHHHH-EEEEEHHHHHHHH.T--HHHHHHHHHHHHHTT-EE CS
      HTH_47 35 allwvLnlaDGkrsLldiAeri.glpfdrvaaiaraLaeaglla 77
                ++l vL laDG +   ++A ri g++ + +++ +r L++ gl++
  KIR64960.1 24 SVLVVLTLADGGKRFSELARRIeGVSQKMLTQTLRGLERDGLIT 67
                6899*****************95799999*************97 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.3e-06    0.0066      18      73 ..      40      90 ..      25      92 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.3e-06
                HHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHH CS
        PadR 18 eleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrel 73
                el++++eg   +s+  l ++L+ Le++gl++++     + ppr  Y+lT  Gr+ l
  KIR64960.1 40 ELARRIEG---VSQKMLTQTLRGLERDGLITRTAYA--TVPPRVDYALTGLGRSLL 90
                45555444...778888899*************886..58************9866 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.8e-05     0.056      13      56 ..      25      67 ..      22      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.8e-05
                HHHHHHHSSTCC-B-HHHHHHHH.TS-HHHHHHHHHHHHHTTSEE CS
        Rrf2 13 allyLakeeeeepvsseeiaerq.nispsylekilakLrkaglvk 56
                +l++L++ ++++  + +e+a+r  ++s+++l + l+ L++ gl++
  KIR64960.1 25 VLVVLTLADGGK--RFSELARRIeGVSQKMLTQTLRGLERDGLIT 67
                678888888877..899****8769******************97 PP

>> HTH_12  Ribonuclease R winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   5.5e-05      0.11      22      54 ..      40      72 ..      35      90 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.5e-05
      HTH_12 22 eLkkrgydigeravRyrLrkleergltrrvgya 54
                eL  r + ++++ +   Lr le++gl+ r  ya
  KIR64960.1 40 ELARRIEGVSQKMLTQTLRGLERDGLITRTAYA 72
                67777788888999999***************9 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   7.3e-05      0.15      26      54 ..      40      69 ..      37      76 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.3e-05
                HHHHHTT.SSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 26 elAsmlG.ltretvsrilseLkreglisrg 54
                elA+++  +++  ++++l+ L+r+gli+r 
  KIR64960.1 40 ELARRIEgVSQKMLTQTLRGLERDGLITRT 69
                67777744*******************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 888.16
//
Query:       KIR64961.1  [L=198]
Description: Clp protease ClpP [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-76  256.3   0.0    1.8e-76  256.1   0.0    1.0  1  CLP_protease  Clp protease
  ------ inclusion threshold ------
      0.044   13.3   0.0      0.087   12.4   0.0    1.5  1  DmpG_comm     DmpG-like communication domain
       0.12   12.0   0.1        1.1    8.8   0.0    2.2  2  GTP1_OBG      GTP1/OBG


Domain annotation for each model (and alignments):
>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.1   0.0     3e-80   1.8e-76       7     180 ..      18     191 ..      12     193 .. 0.98

  Alignments for each domain:
  == domain 1  score: 256.1 bits;  conditional E-value: 3e-80
                   HHHHHHHHTTTEEEEES-BSHHHHHHHHHHHHHHHHH-SSS-EEEEEEE--B-HHHHHHHHHHHHHSSS-EEEEEEEEEETHHHHHHHTS-TTGEEE CS
  CLP_protease   7 ydiysrllkeriiflgseiddevankiiaqLllLeaedpdkdillyinspGGsvtaglaIydtmqyikpdvsticlGlaaSmgslllaagekgkRfa 103
                    ++++rllkeriiflg+e++de+an+i+aqLllL aed+++di+lyinspGGsv+ag+a+ydtm+y++ dv+t++lG+a Smg++ll+ag+ gkR+a
    KIR64961.1  18 DQVFQRLLKERIIFLGTEVTDESANQICAQLLLLAAEDSERDIYLYINSPGGSVSAGMAVYDTMRYVRNDVATLALGMAGSMGQFLLCAGTAGKRYA 114
                   5799********************************************************************************************* PP

                   ETTEEEEES-TEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHCSTEEEEHHHHHHHTSSSEE-S CS
  CLP_protease 104 lpnarimihqPlggaqgqasdieieaeellkikerlneilakhtgqslekiekdldrdtflsaeeAveyGLidevie 180
                   lp++rim+hqP+gg++g++ di i+ae++l++k++++e++a+h+g+s+e+i++d drd+++++eeA eyGLid+v++
    KIR64961.1 115 LPHSRIMMHQPSGGFGGTVADITIQAENMLHVKRTMQELIARHSGRSVEQIQQDSDRDRWFTPEEAREYGLIDRVLS 191
                   ***************************************************************************86 PP

>> DmpG_comm  DmpG-like communication domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.5e-05     0.087       4      39 ..      87     122 ..      84     125 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.5e-05
   DmpG_comm   4 dreslvlGyaGVYSsFllhaeraaerygvdardilv 39 
                 d ++l+lG+aG  + Fll a  a +ry ++   i++
  KIR64961.1  87 DVATLALGMAGSMGQFLLCAGTAGKRYALPHSRIMM 122
                 7789***************************99987 PP

>> GTP1_OBG  GTP1/OBG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.062   3.7e+02      89     106 ..      32      49 ..      29     105 .. 0.58
   2 ?    8.8   0.0   0.00018       1.1      24      57 ..     118     151 ..     103     169 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.062
                 TTEEEEETTTTEEEEEE- CS
    GTP1_OBG  89 vgtvvkdeetgevladlt 106
                 +gt v+de+ ++++a+l 
  KIR64961.1  32 LGTEVTDESANQICAQLL 49 
                 699999999998876652 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00018
                 TTCCCEEB-S--------EEEEE-TT--SSGCCC CS
    GTP1_OBG  24 kyvpkggpdGGdGGkGGdvileadeklntlldlk 57 
                 + + +  p+GG GG  +d+ ++a++ l+   +++
  KIR64961.1 118 SRIMMHQPSGGFGGTVADITIQAENMLHVKRTMQ 151
                 4566788****************99887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1582.21
//
Query:       KIR64962.1  [L=214]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-15   56.3   5.3    3.1e-15   56.3   5.3    3.2  3  HTH_31    Helix-turn-helix domain
      6e-14   51.8   0.2    1.1e-13   51.0   0.2    1.5  1  HTH_3     Helix-turn-helix
    1.8e-09   37.4   0.0    2.6e-09   37.0   0.0    1.2  1  HTH_19    Helix-turn-helix domain
    5.7e-07   29.9   0.0    9.4e-07   29.2   0.0    1.3  1  HTH_26    Cro/C1-type HTH DNA-binding domain
    3.2e-05   23.7   1.0    0.00015   21.6   1.0    2.1  1  HTH_25    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.015   15.3   0.1      0.031   14.2   0.1    1.6  1  HTH_37    Helix-turn-helix domain
      0.035   13.9   0.0      0.075   12.8   0.0    1.6  1  LacI      Bacterial regulatory proteins, lacI family
       0.11   13.1   0.9       0.21   12.2   0.1    1.8  2  UreF      UreF


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   5.3   1.4e-18   3.1e-15       2      61 ..       8      66 ..       7      74 .. 0.92
   2 ?    0.4   0.3      0.39   8.8e+02      29      56 ..      72      98 ..      67     106 .. 0.78
   3 ?    1.4   6.3      0.19   4.2e+02       3      17 ..     196     210 ..     194     213 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 1.4e-18
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaer 61
                +G  Lr+ R+r+G +++evAe++gvs  +ls +E+Gr  + s +vl+a++ralg d +++
  KIR64962.1  8 IGSVLRRVRQRQGRTLREVAEAAGVSLPYLSEVERGRK-EASSEVLAAICRALGIDLSDL 66
                699***********************************.8***************95543 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.39
      HTH_31 29 stlsrlEqGrrgrpspavlealaralgl 56
                + l+r+E+      ++ +l++l +++ +
  KIR64962.1 72 DDLRRVERRVPA-APRVALARLDEVVSV 98
                567888888884.778899999988766 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.19
      HTH_31   3 GalLralReraGLsq 17 
                 ++ L+++R+raGL++
  KIR64962.1 196 ARVLARRRARAGLRR 210
                 689**********98 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.2   4.9e-17   1.1e-13       1      55 []      12      66 ..      12      66 .. 0.98

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 4.9e-17
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsldel 55
                l++ R+ +g +++e+Ae++Gvs  ++s  E+G+ + s e+l ++++aLg++l++l
  KIR64962.1 12 LRRVRQRQGRTLREVAEAAGVSLPYLSEVERGRKEASSEVLAAICRALGIDLSDL 66
                799************************************************9986 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   1.2e-12   2.6e-09       1      61 [.       9      68 ..       9      72 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1.2e-12
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyllq 61
                G  L+++R   g t++e+ae +g+s  ++s+ E g+k ++s+e+l +i++algidl  ll 
  KIR64962.1  9 GSVLRRVRQRQGRTLREVAEAAGVSLPYLSEVERGRK-EASSEVLAAICRALGIDLSDLLE 68
                5679********************************9.******************99985 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   4.2e-10   9.4e-07       2      59 ..      12      68 ..      11      70 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 4.2e-10
      HTH_26  2 LrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLle 59
                Lr++ +  g t  e+a+++g+s + ls    g+ +  s ++L++iC+aLg++++DLle
  KIR64962.1 12 LRRVRQRQGRTLREVAEAAGVSLPYLSEVERGR-KEASSEVLAAICRALGIDLSDLLE 68
                6666667777**********************9.8*********************98 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   1.0   6.6e-08   0.00015       2      60 ..      12      64 ..      11      66 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 6.6e-08
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT--TTSS-HHHHHHHHHHHHHHTT--HH CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEeddfdalpepvylrgylrnYArlLgldpe 60
                Lr+ R+++g +l+eva+   ++  yl + E+++ +a  e       l +++r+Lg+d +
  KIR64962.1 12 LRRVRQRQGRTLREVAEAAGVSLPYLSEVERGRKEASSEV------LAAICRALGIDLS 64
                9*******************************87776644......8888888888865 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.4e-05     0.031      16      72 ..       5      60 ..       2      71 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
                HHHHHHHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTT CS
      HTH_37 16 KaqlalaiaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalG 72
                ++ + + +++++++++ + +e+a++ g++ P +s+++rg+ +  s + L  +  alG
  KIR64962.1  5 RRVIGSVLRRVRQRQGRTLREVAEAAGVSLPYLSEVERGRKE-ASSEVLAAICRALG 60
                67777889******************************9854.45556666666666 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.3e-05     0.075       1      29 [.      22      50 ..      22      59 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.3e-05
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHH CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVsee 29
                t+++VA++AGVS    S v ++++  s e
  KIR64962.1 22 TLREVAEAAGVSLPYLSEVERGRKEASSE 50
                89**********97777777766666665 PP

>> UreF  UreF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.3e-05      0.21      56      98 ..      10      67 ..       3      70 .. 0.85
   2 ?   -2.4   0.0         3   6.8e+03     114     129 ..     136     151 ..     128     152 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.3e-05
                HHHHHHHHHHHHHHHHHHHH-................-HHHHHHHHHHHHT--HHHHH CS
        UreF 56 aelrlaseqmGrsllrllrkl.............t..hypvafglaaaalgipleeal 98
                ++lr+  +++Gr l ++++++             +  +   +++++++algi+l ++l
  KIR64962.1 10 SVLRRVRQRQGRTLREVAEAAgvslpylsevergRkeASSEVLAAICRALGIDLSDLL 67
                789******************98888877766650556899*************9987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3
                 HHHTT--HHHHHHHHH CS
        UreF 114 vklvplGqtagqrila 129
                 ++l+ + +tag r+l+
  KIR64962.1 136 LRLGGVTPTAGGRLLH 151
                 6888888999988885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1557.94
//
Query:       KIR64963.1  [L=339]
Description: potassium transporter Kef [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-28   98.5   2.5    4.4e-28   97.9   2.5    1.3  1  TrkA_N           TrkA-N domain
    2.3e-12   46.7   1.3      4e-12   45.9   1.3    1.3  1  Ion_trans_2      Ion channel
    6.6e-05   23.4   1.3    0.00021   21.8   0.9    2.0  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
       0.01   16.1   0.8      0.045   14.0   0.7    2.0  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.023   14.7   2.2       0.17   11.8   0.0    2.7  3  ADH_zinc_N       Zinc-binding dehydrogenase
      0.026   15.0   0.6      0.091   13.2   0.6    1.9  2  NAD_binding_7    Putative NAD(P)-binding
      0.026   15.0   0.3       0.17   12.4   0.2    2.2  2  Toprim_4         Toprim domain
      0.043   13.0   0.0      0.059   12.6   0.0    1.2  1  Ion_trans        Ion transport protein
      0.063   13.3   0.1       0.18   11.9   0.1    1.9  1  AdoHcyase_NAD    S-adenosyl-L-homocysteine hydrolase, NAD bin
       0.09   12.3   0.2       0.14   11.7   0.2    1.5  1  IlvN             Acetohydroxy acid isomeroreductase, NADPH-bi
       0.66   10.2   4.3        2.6    8.3   1.4    2.7  2  PK_C             Pyruvate kinase, alpha/beta domain


Domain annotation for each model (and alignments):
>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   2.5   2.7e-31   4.4e-28       1     115 [.     124     242 ..     124     243 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 2.7e-31
                 EEEES-SHHHHHHHHHHHHTT...EEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSS.SEEEEE CS
      TrkA_N   1 iiiiGlGrvGrslaeeLsegg...kdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpk.kkiiar 95 
                 +ii+G+G+ Grs +  L e+g   +++vv++++++ +++++  gl ++ g+at+ +vL ea++ +a+avi+at++d+a++l++l++++l  +  +iia 
  KIR64963.1 124 VIICGYGTKGRSAVSALLENGldkSRIVVVERSPASLRQATSAGLVAIEGSATRSSVLNEAHVRNAKAVIIATDSDDASVLVALTVRQLTAGqVRIIAA 222
                 79*****************8889977************************************************************99999889***** PP

                 ESSGGGHHHHHHHTTSEEEE CS
      TrkA_N  96 aqdpehaellkklgadvvis 115
                 a+++e+a llk+ ga++vi+
  KIR64963.1 223 AREAENAPLLKQSGAHHVIV 242
                 ******************97 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   1.3   2.4e-15     4e-12       5      78 ..      25     104 ..      21     105 .. 0.80

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 2.4e-15
                  HTCHHHHHHHHT............T---HHHHHHHHHHHHTTS----SSTT-----HHH.HHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   5 lvlifgaviysl........eegwekwsfldalYfsfvtltTiGYGdivpetdagrlft.ivyillGlalfalflavlgkvlt 78 
                  lvl++ +++y          e+   + ++ld++Y+++v+l+T GYGdi+p  +  rl++ ++++   ++++++++ ++ +vlt
   KIR64963.1  25 LVLAVVTAVYLDrdgyrdvnED---GLTLLDCFYYAVVSLSTTGYGDITPAAPSARLVNvLFVTPARVLFLIILVGTTLEVLT 104
                  5666666666668888644333...56************************5555****889999999999999999888876 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.9   1.3e-07   0.00021       4      92 ..     125     219 ..     123     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.3e-07
                    EE.TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC......-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEE CS
  F420_oxidored   4 ii.GaGnmgealasgllaagaqpheivvansrnpekaeelaeelg......vkvtavdneeaaeeadvvvlavkpedveevlselakdalkgklvi 92 
                    ii G+G  g++ +s ll++g +++ ivv+ +r+p +++++ ++        ++ ++v ne  +++a+ v++a    d++ +++   +++ +g++ i
     KIR64963.1 125 IIcGYGTKGRSAVSALLENGLDKSRIVVV-ERSPASLRQATSAGLvaiegsATRSSVLNEAHVRNAKAVIIATDSDDASVLVALTVRQLTAGQVRI 219
                    677************************88.*******999887667777776666667999999***********999999998888888888755 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.7   2.8e-05     0.045       1      51 [.     124     193 ..     124     227 .. 0.68
   2 ?    1.3   0.2      0.24     4e+02      22      70 ..     185     235 ..     173     250 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH...................TTTCEEE CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka...................lgvrfea 51 
                      v+i G+G  G++++  l++++  +++i+v++rs ++l+++ ++                    ++ ++ +
       KIR64963.1 124 VIICGYGTKGRSAVSALLENGLDKSRIVVVERSPASLRQATSAGlvaiegsatrssvlneahvRNAKAVI 193
                      7899****************99888***********9998754366664443333333333333333333 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.24
                      CT-G..EEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS CS
  Sacchrp_dh_NADP  22 dvda..eitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg 70 
                      +v++   +++a+ s++    +a ++++ ++ ++ + a+ +ea  a+llk+ 
       KIR64963.1 185 HVRNakAVIIATDSDDASVLVALTVRQLTAGQVRIIAAAREAENAPLLKQS 235
                      343342455555555554444444455555555555555555555555555 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       8.7   1.4e+04       7      19 ..      17      31 ..      14      37 .. 0.62
   2 ?    1.3   0.0      0.19   3.1e+02       7      34 ..     137     167 ..     133     172 .. 0.78
   3 ?   11.8   0.0   0.00011      0.17      11      42 ..     213     244 ..     204     283 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 8.7
                HHHHHHTT-..EEEE CS
  ADH_zinc_N  7 vqlAkalGa..evia 19
                + lA+alG    v++
  KIR64963.1 17 LRLAAALGLvlAVVT 31
                457777777643333 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.19
                 HHHHHHTT-...EEEEEESSHHHHHHHHHTT CS
  ADH_zinc_N   7 vqlAkalGa...eviavdsseeklelakklG 34 
                 v ++   G    ++++v +s+  l++a + G
  KIR64963.1 137 VSALLENGLdksRIVVVERSPASLRQATSAG 167
                 5555556666679**************9999 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00011
                 HHTT-EEEEEESSHHHHHHHHHTTESEEEETT CS
  ADH_zinc_N  11 kalGaeviavdsseeklelakklGadevinyk 42 
                  a  +++ia+++ +e++ l+k+ Ga++vi ++
  KIR64963.1 213 TAGQVRIIAAAREAENAPLLKQSGAHHVIVSS 244
                 56667************************884 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.6   5.6e-05     0.091       8      82 ..     122     209 ..     118     249 .. 0.77
   2 ?   -0.7   0.0       1.2   1.9e+03      26      39 ..     232     245 ..     208     330 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.6e-05
  NAD_binding_7   8 kkvlvvGgGevAarkvrklleag...akvtvvapev...keele....elvk....laeeel..ekdlegadlviaatddrelneriaeaa 82 
                     +v++ G G+ + + v+ lle+g    +++vv           +    +lv     ++++ +  e+++ +a+ vi+atd ++ +  +a + 
     KIR64963.1 122 DHVIICGYGTKGRSAVSALLENGldkSRIVVVERSPaslR---QatsaGLVAiegsATRSSVlnEAHVRNAKAVIIATDSDDASVLVALTV 209
                    69*******************9977667888866643341...244456666222223444467788999********9998887766555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.2
  NAD_binding_7  26 lleagakvtvvape 39 
                    l ++ga+ ++v+ +
     KIR64963.1 232 LKQSGAHHVIVSSA 245
                    33444444444444 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.77   1.3e+03      36      67 ..     101     133 ..      92     155 .. 0.67
   2 ?   12.4   0.2   0.00011      0.17       3      78 ..     150     212 ..     148     223 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.77
    Toprim_4  36 girpeklkt.enlve.aekkvkevilaldgDaeG 67 
                 ++  e+++t ++l++ +++  + vi+++ g++ G
  KIR64963.1 101 EVLTEQYRTgRRLTRwRKSVKDHVIICGYGTK-G 133
                 45557777777777777777789999987774.4 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00011
    Toprim_4   3 iiiVEgyaDvlalekagiknvvavlggalspldgirpeklktenlveaekkvkevilaldgDaeGeataerlaell 78 
                 i++VE     ++l +a   ++va+ g+a   ++ ++ ++ +          +k vi+a+d+D +   +a+ + + l
  KIR64963.1 150 IVVVERSP--ASLRQATSAGLVAIEGSAT-RSSVLNEAHVRN---------AKAVIIATDSDDASVLVALTVRQ-L 212
                 55665543..789999999*******999.888888666666.........7***********99999888777.3 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.6e-05     0.059     178     230 ..      49     100 ..      19     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.6e-05
                 SHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 178 nfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlli 230
                 +++++++ ++++++t g+gdi++a  +++  v+++++    +l+ ++l+   +
  KIR64963.1  49 TLLDCFYYAVVSLSTTGYGDITPAAPSAR-LVNVLFVTPARVLFLIILVGTTL 100
                 5899*************************.66666666666666666655555 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00011      0.18      25      67 ..     123     168 ..     117     257 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                    EEEEE--SHHHHHHHHHHHHCT...-EEEEE-S-HHHHHHHHCTT- CS
  AdoHcyase_NAD  25 vavvaGyGdvGkGcaaslkglG...arvivtevdPicalqaameGf 67 
                     ++++GyG  G+ + ++l + G   +r++v e  P +  qa+  G+
     KIR64963.1 123 HVIICGYGTKGRSAVSALLENGldkSRIVVVERSPASLRQATSAGL 168
                    689***************999966679*********9999987775 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   8.6e-05      0.14       6      53 ..     123     172 ..     119     280 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.6e-05
                 -EEEES-SHHHHHHHHHHHHTT--..EEEEE-TT-HHHHHHHHTT-EEEE CS
        IlvN   6 kiaviGyGsqGhaqalnlrdsgld..vvvglregsksvkkAkeegfevlt 53 
                 ++ + GyG++G++    l ++gld   +v ++++ +s+++A+++g+  ++
  KIR64963.1 123 HVIICGYGTKGRSAVSALLENGLDksRIVVVERSPASLRQATSAGLVAIE 172
                 6899*******************73234556666679*****99986654 PP

>> PK_C  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.12     2e+02      46     103 ..     101     156 ..      55     170 .. 0.54
   2 ?    8.3   1.4    0.0016       2.6       4      65 ..     177     242 ..     174     328 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
                 S....HHHHHHHHHHCTTEEHHH.HHHHH...TTSHHHHHHHHHHHTTSS-STSEEEEEE-S CS
        PK_C  46 p....neltarqlalyrGvypvlvekaktaestdellreavkvakeaglvkkgdevvvtaGt 103
                      + +t r+l+ +r  +  +v++      t    r av +++e+gl  +++++vv+  +
  KIR64963.1 101 EvlteQYRTGRRLTRWRKSVKDHVIICGY--GT--KGRSAVSALLENGL--DKSRIVVVERS 156
                 04444555566666655555555554322..22..23556666666665..33455555555 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHHT-SEEEEE-SSSHHHHHHHHT-TS.....SEEEEEESHHHHHHHHHHCTTEEHHH. CS
        PK_C   4 akaaveaaeelgakaIvvltesGetArliskyrpk.....vpiiavtpneltarqlalyrGvypvlv 65 
                  +++ + a+  +aka++++t s ++  l++   ++     v iia  ++ + a  l  + G + v v
  KIR64963.1 177 RSSVLNEAHVRNAKAVIIATDSDDASVLVALTVRQltagqVRIIAAAREAENAPLLKQS-GAHHVIV 242
                 5788899999*************998888776666677789999988887776555543.5555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 2165.33
//
Query:       KIR64964.1  [L=344]
Description: 2-oxoacid:ferredoxin oxidoreductase subunit beta [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-30  105.3   0.0    3.8e-30  104.7   0.0    1.3  1  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
  ------ inclusion threshold ------
       0.17   12.2   0.0       0.31   11.3   0.0    1.4  1  IBR           IBR domain, a half RING-finger domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.7   0.0   4.2e-34   3.8e-30       2     153 .]      55     202 ..      54     202 .. 0.91

  Alignments for each domain:
  == domain 1  score: 104.7 bits;  conditional E-value: 4.2e-34
                   SSHHHHHHHHHHTTSSSSEEEC.ETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHT.GGGHHHHHHTT-SEEEEEEE-SBCCCHHHH...HH CS
  TPP_enzyme_C   2 iGcltlwaarllkvkrprsylt.sgglgtmGyglpaAiGaklakpdrevvaivGDGgflmi.lqelatavrrnlpitvvvlnNegygmtggq...qe 93 
                   iGc+++    +     p  y++  g+++ +G++ ++A+G+++ +pd  v++++GDG+ l i +++l++a rrn++++++++nN++yg+t+gq   ++
    KIR64964.1  55 IGCSSR----F-----P-YYMNtYGLHSIHGRAPAIATGLSVSRPDLSVWVVTGDGDALSIgGNHLIHALRRNVNLKILLFNNRIYGLTKGQyspTS 141
                   677776....3.....4.4555499*********************************************************************999 PP

                   HHTCCTTTTSBB.BS----HHHHHHHTTSE.EEEESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C  94 pfggkrksgpagkdlkpvdfaklaealGak.garvekadveeleealkealekkgpaliev 153
                     g+ +ks+pag+ + p+++  la +++a+ + r  ++d ++l+ +l++a e++g+a++e+
    KIR64964.1 142 EVGKVTKSTPAGSADAPFNPISLALGAEASfVGRTIDSDRKHLQSVLRAAAEHQGSAFVEI 202
                   9999********999999999999999999555767788********************97 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.4e-05      0.31       8      35 ..      11      35 ..       6      61 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.4e-05
         IBR  8 lkkslesdpnlkwCprpdCeaiiekseg 35
                 k   +sd++++wCp  +C+ ++   + 
  KIR64964.1 11 AK-DFKSDQEVRWCP--GCGDYAILAAV 35
                34.479999******..***87766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2285.21
//
Query:       KIR64965.1  [L=614]
Description: 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-53  180.2   0.0    7.4e-53  179.7   0.0    1.2  1  POR_N         Pyruvate flavodoxin/ferredoxin oxidoreductase, 
    2.2e-24   86.5   0.0    3.5e-24   85.8   0.0    1.3  1  POR           Pyruvate ferredoxin/flavodoxin oxidoreductase
    1.2e-06   28.2   0.6      2e-06   27.5   0.6    1.3  1  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    0.00012   22.4   0.0    0.00033   20.9   0.0    1.8  1  PFOR_II       Pyruvate:ferredoxin oxidoreductase core domain 


Domain annotation for each model (and alignments):
>> POR_N  Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.7   0.0   1.6e-56   7.4e-53       7     221 ..     255     473 ..     249     480 .. 0.92

  Alignments for each domain:
  == domain 1  score: 179.7 bits;  conditional E-value: 1.6e-56
                 TEEEEEE--BTTTCCHHHHHCHCCCCCTTEE.EEEE-SSHHHHHHHHHHHHCTT-EEEEEEECCHHHHCCCCHHHHHHTT--EEEEEEEEE-STTBEEE CS
       POR_N   7 gvdviaaYPITPsseiaeelaellakgevgdvevvqmesEigaisaviGAaaaGaraaTaTSgqGllLmienlglaageelPvvivvvaRalpstglsi 105
                  + ++ aYPITP+s+i++el+++ + g     +++q+e+Ei+a++a++GA+++Ga+++T+TSg+G++L++e++ la+  elP+viv+v+Ra+pstg+++
  KIR64965.1 255 LPVFLGAYPITPASDILHELSKHKRFGI----VTMQAEDEIAAVGAALGASYGGALGVTTTSGPGVALKSETISLAVALELPLVIVDVQRAGPSTGMPT 349
                 567999*****************95555....89***************************************************************** PP

                 EE--TTCHHHH.....S---EEEE-SSHHHHHHHHHHHHHHHHHCTSEEEEEEEHHHH.HEEEEEEC-SGG.GS-----SBXXXXXXXX....SXXXBX CS
       POR_N 106 rtdqsDlmaar.....dtglivlasenvqeafdlalvAfnlAekvrvPvivlfDgfllshevekvelpdeedelklikekleeyerkey....aldpek 195
                 +t+q Dl++a+     + +++v+a+++  ++f  a++A ++A+++r+Pv++l+D +++ +  e++ lpd+e + +l+ e++ + +  +     +l+  +
  KIR64965.1 350 KTEQADLNMALygrhgEAPVAVIAPKSPSDCFHAAIEAARIALTYRTPVLLLSDNYVA-NGSEPWLLPDVESLPDLRVEFATAPNGDDGtflpYLRDPQ 447
                 **********************************************************.************8888888777665544435666999999 PP

                 XTXXTSSXXEEESBXBXTTSXBXXXX CS
       POR_N 196 piargtaanpdtglehrekgneaeda 221
                 ++ar  a + + glehr  g e +d+
  KIR64965.1 448 TLARPWAIPGTPGLEHRIGGLEKADK 473
                 *****************999999885 PP

>> POR  Pyruvate ferredoxin/flavodoxin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.0   7.8e-28   3.5e-24       1     175 [.      19     207 ..      17     209 .. 0.91

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 7.8e-28
                 CTSTHHHHHHHHHHHHHHTT-EEEEEEEEESSSS......SSCEEEEEEEESS.-SSS--TTSEEEEEESSHHHHHHHGGGEEEEEEEEEECTCGTT-C CS
         POR   1 GGqGvvtagkilakaaaraGyyvqanreygseir......Gghsyshvrisdepivpsievgeadllvaldaetlsehldglkpggiiiynseelkpde 93 
                 +G+G++++g  ++   a  G ++++ + +++eir       g+s ++v ++d   + +++ +++++lva+++++l+ +l++l  g  ii+n++e+ +++
  KIR64965.1  19 SGDGMQLTGDRFTSETAQLGNDISTLPNFPAEIRapagtlPGVSSFQVHFADY-DILTPG-DAPNVLVAMNPAALKANLADLPRGADIIVNTDEFTKRN 115
                 5*********************************9999999***********8.799999.************************************** PP

                 CHHHCTS-HHHHHHH..T-EEEEE-HHHHHH........HCCC....CCHHHHHHHHHHHHHHTS-HHHHHHHHHCCS-CH.HHHHHHHHHHHHH CS
         POR  94 lkkakeeerelkerl..gvrvygvdatkiak........eiggn...eraaNtvmlGalaallglplealeeaikkrfpkkkeviekNlkafrag 175
                 l+k  +++ +l++ +  g+ v +v +t +              +   era+N+++lG l+++ + p e+ ++ ++++f+k+ e++ +N++afrag
  KIR64965.1 116 LAKVGYQASPLDDDSldGYVVHPVALTSMTVgaladqqvS---KkdaERAKNMFALGLLSWMYSRPYESTLRFLERKFAKRPELVAANVAAFRAG 207
                 ************999**55555555555555444445543...3555*********************************99************9 PP

>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.6   4.4e-10     2e-06       2     157 ..     237     400 ..     236     406 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 4.4e-10
                   EHHHHHHHHHHHCT--E.....EEE---CCCHHHHCCHHCT...TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT- CS
  TPP_enzyme_N   2 tvaealvraLkalgveh.....vfgvpGsrilplldalseeq..girvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdri 91 
                   t+ +al   L a+gv++     + ++p +   ++l +ls+++  gi +++a +E +a++aA g   + g    v +tsgpG++     +  A    +
    KIR64965.1 237 TGNTALSLGLVAAGVRSglpvfLGAYPITPASDILHELSKHKrfGIVTMQAEDEIAAVGAALGA--SYGGALGVTTTSGPGVALKSETISLAVALEL 331
                   66777777888888888888655578999999**********8888888999999999999997..44555667788******************** PP

                   -EEEEEEE--CCCHH..S..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHH..HSSS--EEEE CS
  TPP_enzyme_N  92 Pllvlsgdrptslrg..qgvlqqeldqlalfrpvtkyaervtspeelpealrrAirta..lsgrpgPvyl 157
                   Pl+++  +r+  ++g  +++ q +  ++al+  + ++ + v  p++    ++ Ai++a  + + ++Pv+l
    KIR64965.1 332 PLVIVDVQRAGPSTGmpTKTEQ-ADLNMALYGRHGEAPVAVIAPKSPSDCFHAAIEAAriALTYRTPVLL 400
                   ***************4444444.44588999999999999999999999999888888666888889987 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   7.3e-08   0.00033       2      75 ..     513     580 ..     512     596 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 7.3e-08
                 SEEEEE-STHHHHHHHHHHHHHHTT--EEEEEES--BS--HHHHHHHSTT-SEEEEEE-S--TT-G-HHHHHHH CS
     PFOR_II   2 evvivamGsvagtaksavdelReegikvGllrlrtlrPFPeeelkellkkvkkvvvldrnisfgseGqlveevk 75 
                   ++++ Gs+ g + +a ++lR++g+ v    lr l P P+ +l e+l+++++vv  ++n      Gql++ ++
  KIR64965.1 513 RLLVLGWGSTYGPIGAACRRLRQRGLPVAQAHLRHLAPMPA-NLGEVLRSYDRVVIPEMNL-----GQLAQVIR 580
                 578999**********************************6.799****************.....88877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 4089.45
//
Query:       KIR64966.1  [L=125]
Description: NADH-ubiquinone oxidoreductase subunit 3 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-29  102.0   0.4    2.1e-29  101.6   0.4    1.2  1  Oxidored_q4      NADH-ubiquinone/plastoquinone oxidoreductase
  ------ inclusion threshold ------
      0.064   13.0   9.6       0.11   12.3   0.2    2.8  3  DUF2157          Predicted membrane protein (DUF2157)
       0.13   12.5   3.4       0.25   11.6   1.7    1.9  2  DUF2530          Protein of unknown function (DUF2530)
        5.2    7.1   7.4         22    5.1   0.1    2.2  2  Gram_pos_anchor  LPXTG cell wall anchor motif


Domain annotation for each model (and alignments):
>> Oxidored_q4  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.4   4.6e-33   2.1e-29       2      99 .]      23     124 ..       8     124 .. 0.94

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 4.6e-33
                  HHHHHHHCHSS-----HH..HHS-SSSS--SS---.--HHCHHHHHHHHHHHHHHHHHHHHHHHHSST....HHHHHHHHHHHHHHHHHHHHHHHHH- CS
  Oxidored_q4   2 llllllsallgpkkpnke..klspYEcGfepvgearlrfsvkfylvallFliFDvevvflfpwavslkel..glfgliemllFllillvglvYewkkg 95 
                  +++++++++l+p +p     k++ YEcG++pvg  + ++++++y++a l+++F ve+vflfpwav++++   gl++++em +F+++l++g++Y+w+k+
   KIR64966.1  23 VVAFAANRVLRPARPADPpgKRAGYECGLDPVGGDWAQMQIRYYVYAYLYVLFAVEAVFLFPWAVVFDRPgfGLVTVAEMGVFVGVLALGILYAWRKN 120
                  57788999***999555456***********************************************98888899*********************** PP

                  S-XX CS
  Oxidored_q4  96 aLeW 99 
                  +L+W
   KIR64966.1 121 ILRW 124
                  **** PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.8    0.0035        16      39      56 ..       9      26 ..       5      36 .. 0.85
   2 ?   12.3   0.2   2.4e-05      0.11     108     145 ..      56      93 ..      49      95 .. 0.87
   3 ?    0.2   0.1      0.13   5.6e+02      71      86 ..     102     118 ..      97     123 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0035
     DUF2157 39 lvlGalllglGlilfvAa 56
                ++lG lll+++l+++vA 
  KIR64966.1  9 ATLGLLLLAAALFFVVAF 26
                579999999999999996 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.4e-05
     DUF2157 108 aaialvgqifqlsgdaysllllwalllllmayllrsag 145
                 +  a ++  + + ++ y l+++ a++l+++a++++  g
  KIR64966.1  56 GDWAQMQIRYYVYAYLYVLFAVEAVFLFPWAVVFDRPG 93 
                 55677888999***********************9876 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.13
     DUF2157  71 lvllllslllg.avlwr 86 
                 +++++++l+lg +++wr
  KIR64966.1 102 MGVFVGVLALGiLYAWR 118
                 56666666666677776 PP

>> DUF2530  Protein of unknown function (DUF2530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.21   9.6e+02      18      30 ..      16      28 ..       7      41 .. 0.55
   2 ?   11.6   1.7   5.7e-05      0.25      20      64 ..      71     119 ..      61     123 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.21
     DUF2530 18 vvgtllWlvalvv 30
                ++ +l ++va+ +
  KIR64966.1 16 LAAALFFVVAFAA 28
                3333444444443 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 5.7e-05
     DUF2530  20 gtllWlvalvvl....lvvgdaleswlpvclaGlvvGllGlaiflwQRr 64 
                   +l++v +v l    +v+ +    ++ v+ +G+ vG+l+l+i+   R+
  KIR64966.1  71 LYVLFAVEAVFLfpwaVVFDRPGFGLVTVAEMGVFVGVLALGILYAWRK 119
                 55677777777633323344455559999**************987665 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   3.0      0.01        45      20      36 ..       8      24 ..       7      30 .. 0.81
   2 ?    5.1   0.1     0.005        22      23      41 ..     102     120 ..     102     121 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.01
                     XXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor 20 ltaaGllallggllLlv 36
                     +  +Gll+l+++l+++v
       KIR64966.1  8 YATLGLLLLAAALFFVV 24
                     56789999999999965 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.005
                      XXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor  23 aGllallggllLlvkrRKk 41 
                      +G+++ +++l++l+ +RK+
       KIR64966.1 102 MGVFVGVLALGILYAWRKN 120
                      5999**************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 958.50
//
Query:       KIR64967.1  [L=289]
Description: dihydropteroate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-66  222.9   0.3    5.8e-66  222.6   0.3    1.1  1  Pterin_bind  Pterin binding enzyme


Domain annotation for each model (and alignments):
>> Pterin_bind  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.6   0.3   3.2e-70   5.8e-66       1     244 []      20     260 ..      20     260 .. 0.96

  Alignments for each domain:
  == domain 1  score: 222.6 bits;  conditional E-value: 3.2e-70
                  EEEEETTTTTCHCCHHCTHHHHHHHHHHHHHHTT-SEEEEESS-TSTT--CCHHHHHHHHHHHHHHHHHHHC.TSEEEEE-S-HHHHHHHHHTTSEEE CS
  Pterin_bind   1 mgilNvtpdsfsdggkfedldkalaqarkmveeGAdilDiggestrPgaervdeeeelervvpvlealrdea.dvpisiDttkaevaeaAlkagadiv 97 
                  m+i+N tpdsf+d+g +++ d+al ++++ v+eGA+i+Digg ++ Pg ++vd++ee++r v  ++a+r+ + dv isiDt++aeva +A++agad++
   KIR64967.1  20 MAIVNRTPDSFFDRGATFAQDSALRAVERAVAEGAEIIDIGGVKAGPG-DEVDVAEEIRRTVDTIAAVRAAFpDVVISIDTWRAEVAVEAVAAGADLL 116
                  89**********************************************.99*********************************************** PP

                  EETTTTSSSTTHHHHHHHHT-EEEEESECSSTTTHCCCCCCCSSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHHHHHT CS
  Pterin_bind  98 NdvsgeerdpkmlelvaeagaavvvmhmrgtpktmqeeegqyedvveeveaflearveaaeeaGvaperillDpgigfgkteehnlellrrldelrea 195
                  Nd++ +  dp++++++ae+ga +v+ h  g   +++  +    dvv++v a ++  +e+a++ Gv+p+ +l+Dp + fgk++ h+le+ rrldel +a
   KIR64967.1 117 NDTWSGA-DPALARVAAETGAGLVCSHAGGLEPRTRPHRAAFADVVADVVATVTGLAERAVALGVRPDGVLIDPAHDFGKNTRHSLEITRRLDEL-SA 212
                  *******.*********************8765555555599*****************************************************.** PP

                  TSSEBEEEGTTGHHHHHHHCTTCHGHHHHHHHHHHHHHHHTT-SEEEES CS
  Pterin_bind 196 levpvllGvSrksflgrllelgkaeeRdagtaaflalaaaaGadivrVh 244
                  +++p+l+++S+k+f+g++l +  ++eR +gt+a++al+a  Ga+++r h
   KIR64967.1 213 TGWPLLVALSNKDFIGETL-DLPVAERLEGTLAATALSAWLGARVFRAH 260
                  *****************98.45599**********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2186.01
//
Query:       KIR64968.1  [L=165]
Description: polyketide cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-13   49.8   4.0    4.9e-13   49.6   4.0    1.1  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
  ------ inclusion threshold ------
      0.035   14.3   0.0      0.043   14.0   0.0    1.3  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra


Domain annotation for each model (and alignments):
>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   4.0   5.5e-17   4.9e-13       3     143 .]      20     160 ..      18     160 .. 0.80

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 5.5e-17
                      EEEEEEEESS-HHHHHHHHTTTTGGGGT-TTEE..EEECSESTSSSTTTEEEEECCCS..SEEEEEEEEEE.TTTTEEEEEEE...SSS-TSEE CS
  Polyketide_cyc2   3 kvtvsvviaappekVwalvsdfenwprWhpeva..rveleggggpargvegtvrvggr..gtvreelvevd.pegrllsyriv..kpvpvanyv 89 
                      +vt++v ++ap+e+V+a +  +e  + W+p+ +   ve++gg+g+   v + v+  g    + ++++v+vd p      y+i+  +  ++ ++ 
       KIR64968.1  20 EVTATVIVNAPAERVFAGLLAWERQSDWIPFTTvrVVEGDGGEGS--LV-EAVTSLGPavLRDEMRVVRVDaP------YEIGvvHCGRLLRGP 104
                      89**************************99766224466665555..66.77776666565568889999977......5553348999999** PP

                      EEEEEEECCET.EEEEEEEEEEE.E--TT--HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  90 atwtvtpdggg.trvtwtgefda.gplggpfekpaaakavkgdleagLerLkarle 143
                      + +++tp +gg t+v+w+  f++ g+ +g +  p++  + k  l+++L+++ +++e
       KIR64968.1 105 GVLRCTPIEGGrTQVVWHEWFHVpGGAAGRVAWPVLWPGSKVSLTQALRKFGRLVE 160
                      *******99998**********7688888888888888888888888888887776 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.8e-06     0.043       1      37 [.      27      65 ..      27     153 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.8e-06
                    ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE.... CS
  Polyketide_cyc  1 vpapadqvyalvadvesypeflphcssvevleeaes...g 37
                    v+apa+ v+a +  +e+ ++++p+ + v+v+e ++     
      KIR64968.1 27 VNAPAERVFAGLLAWERQSDWIPFTT-VRVVEGDGGegsL 65
                    79*********************999.9****99974331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1212.26
//
Query:       KIR64969.1  [L=195]
Description: 3-methyladenine DNA glycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-65  218.8   0.0    5.2e-65  218.5   0.0    1.0  1  Adenine_glyco  Methyladenine glycosylase
  ------ inclusion threshold ------
       0.15   12.6   0.0       0.43   11.1   0.0    1.9  1  Biotin_carb_N  Biotin carboxylase, N-terminal domain


Domain annotation for each model (and alignments):
>> Adenine_glyco  Methyladenine glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.5   0.0   5.8e-69   5.2e-65       1     175 [.      16     186 ..      16     188 .. 0.97

  Alignments for each domain:
  == domain 1  score: 218.5 bits;  conditional E-value: 5.8e-69
  Adenine_glyco   1 wankdplyvaYhDeeWGvpvtddkklFelLvLegfqaglswetilkkreafreafdgFdlekvakydeekveelladegiirnrlKieavisnAra 96 
                    w +++p+yv YhD+eWG+p + d++l+e+++Le+fq+glsw til+kr +fr afd+F +e+va+y+e++v++llad+gi+rnr+K+ea+i+nAra
     KIR64969.1  16 WGASTPDYVPYHDREWGRPLRGDDALYERMTLEAFQSGLSWLTILRKRPSFRLAFDDFRIEAVAAYGEADVTRLLADAGIVRNRAKVEAAIANARA 111
                    77889******************************************************************************************* PP

  Adenine_glyco  97 vlalqeefgsfseylwsfvdgkpiveelksaeevpattelsealskdLkkrGfkfvGptivysflqavGlvndhleeCf 175
                    +l+l e    +s++lws++   p   +l+s +evpa t++s+al+k+LkkrGf+fvGpt++y+++qa+G+v+dhl++C+
     KIR64969.1 112 ALELPE---GLSALLWSYAP-PPRAARLASFAEVPALTPESTALAKALKKRGFRFVGPTTAYALMQATGMVDDHLAGCH 186
                    ***955...5*********8.688889999************************************************5 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.8e-05      0.43      87     107 ..     147     167 ..      66     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.8e-05
                    T-HHHHHHHHHTT-EESSS-H CS
  Biotin_carb_N  87 EnaefaeaveeagivfiGPsa 107
                    E++++a+a++++g+ f+GP++
     KIR64969.1 147 ESTALAKALKKRGFRFVGPTT 167
                    999****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1373.05
//
Query:       KIR64970.1  [L=235]
Description: hypothetical protein TK50_05375 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1916.01
//
Query:       KIR64971.1  [L=263]
Description: enoyl-CoA hydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-53  179.8   0.1    6.4e-53  179.6   0.1    1.0  1  ECH_1     Enoyl-CoA hydratase/isomerase
      4e-32  112.0   0.1      7e-32  111.2   0.1    1.3  1  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.6   0.1   7.1e-57   6.4e-53       3     250 ..      10     262 ..       8     263 .] 0.94

  Alignments for each domain:
  == domain 1  score: 179.6 bits;  conditional E-value: 7.1e-57
                 ETTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHCHHHHHHHCCHHHHH....HHHHHSSSEEEEEE-S CS
       ECH_1   3 eagvaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeekakqallkeevlelw....tklytvpkpviaavnG 97 
                  ++v+ ++lnrP+a+Nal+ +l + l +al++le d+s ravvL+G ++ F+aG+dl+e ++  ++ +a +  +v +++     +l ++pkpv+aav+G
  KIR64971.1  10 TDAVVTLTLNRPTAMNALDVALKEALRDALAELEADRSCRAVVLAGAGGSFSAGQDLREHVQVLESPDANPLDTVRAHYnpiaARLANLPKPVVAAVRG 108
                 6789********************************************************998777776665555555511116899************ PP

                 EEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESG.GGHHHHHHHHHHHHHHSCH CS
       ECH_1  98 aaigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpe.eqlleealelaeklaeksp 195
                  a+g+G+ la  +D++i + + +f  +++ +Gl ++ g++++l+r vG++kA e+l+l++++ a+ea++ Gl  + + + eq+l +a ela++la  + 
  KIR64971.1 109 MAAGAGASLAFLADFRIGGPKTRFLMAFAGVGLAADTGASWTLPRLVGHAKAVELLMLAEPVAAEEASRLGLLTRLLDDdEQVLPTAQELAARLAAGPT 207
                 ***************************************************************************999879****************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHHHHHHHHTCSH----- CS
       ECH_1 196 aalrqlkealnakledalaeqleaeaklfestfskddikeGlqaflEkrkpefed 250
                  a+ ++k +l  +   +la +l+aea+ ++    ++d +    af+ k+kp fe+
  KIR64971.1 208 VAYGAIKRQLSIADAGTLADALAAEAQAQSICGGTADHRAATLAFVNKQKPVFEG 262
                 *************99**************************************97 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.2   0.1   7.8e-36     7e-32       3     187 ..      15     205 ..      13     239 .. 0.87

  Alignments for each domain:
  == domain 1  score: 111.2 bits;  conditional E-value: 7.8e-36
                 EEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHH.HHHHHHC-SS-EEEEE-BEEET CS
       ECH_2   3 vitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYk.lnyliatypkpvvalmdGivmG 100
                 ++tLnrp a+NaL+ ++ +al++al e e+d ++++vvl gag  +f+AG D+r+ ++  ++ +++  + +r+ Y+ + +++a++pkpvva + G++ G
  KIR64971.1  15 TLTLNRPTAMNALDVALKEALRDALAELEADRSCRAVVLAGAG-GSFSAGQDLREHVQVLESPDANPLDTVRAHYNpIAARLANLPKPVVAAVRGMAAG 112
                 79***************************************99.89****************9888789999999857899****************** PP

                 HHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGH.....HHHHHHHHTT CS
       ECH_2 101 gGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpsekl.....ealeeaLael 187
                  G++l+  + fr+   +t+f m   ++Gl  D G+s+ L+rl g + +  l + ++ + +++a  +gl t ++++++      ++l+++La+ 
  KIR64971.1 113 AGASLAFLADFRIGGPKTRFLMAFAGVGLAADTGASWTLPRLVGhAKAVELLMLAEPVAAEEASRLGLLTRLLDDDEQvlptaQELAARLAAG 205
                 ******************************************773568889999******************998764333335555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1870.61
//
Query:       KIR64972.1  [L=272]
Description: PaaX family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-29  101.0   1.0    7.4e-29   99.9   1.0    1.6  1  PaaX_C    PaaX-like protein C-terminal domain
    8.2e-18   64.4   0.0    1.4e-17   63.6   0.0    1.4  1  PaaX      PaaX-like protein
  ------ inclusion threshold ------
      0.011   15.9   0.5      0.027   14.6   0.1    1.9  2  AbiEi_4   Transcriptional regulator, AbiEi antitoxin
      0.056   13.3   0.1       0.15   12.0   0.1    1.8  1  MarR_2    MarR family


Domain annotation for each model (and alignments):
>> PaaX_C  PaaX-like protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   1.0   1.7e-32   7.4e-29       4      98 ..     165     257 ..     162     258 .. 0.95

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 1.7e-32
      PaaX_C   4 lveelWdldelaakYeeflaeyrpllkellekeelapeeaFlvrtlllheyrkllfrDPgLPeellpedWpGaaarelfrelyrelaeaaerfle 98 
                 +v+++Wdl+e+ ++Ye+f+ae rpll++++ +++  +eea+++r++l+h +r +lfrDP+LP +llpe+WpG+aa+++f++++ +l++aa+r++e
  KIR64972.1 165 VVRRAWDLTEIGHAYEQFVAEQRPLLAAVTVRSD--DEEAYAARFRLVHAWRTFLFRDPQLPPALLPERWPGTAAASFFDRHATRLRPAADRYVE 257
                 79**********************9999888665..9********************************************************97 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   3.2e-21   1.4e-17       2      67 ..       3      68 ..       2      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 3.2e-21
        PaaX  2 arSlivtlygdyveprggaiwlgsLirllaelGiseslvRaalsRlakaGwlvrekegrrsfYrLs 67
                arS  + lygd ++prgg ++++ L++lla+lGi   +vR+a+sR++++Gwl++ + +    Y+ +
  KIR64972.1  3 ARSALFDLYGDHLRPRGGRAPVAALVKLLAPLGIAPPAVRTAVSRMVRQGWLDPLRLASGPGYSIT 68
                89****************************************************998888888876 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1     6e-06     0.027      20      42 ..      31      58 ..      21      58 .. 0.87
   2 ?   -3.6   0.1       2.9   1.3e+04      27      32 ..      70      75 ..      67      81 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6e-06
     AbiEi_4 20 ea.aGispsa....lrrLvrkGwLvrlr 42
                 a +Gi p a    ++r+vr+GwL  lr
  KIR64972.1 31 LApLGIAPPAvrtaVSRMVRQGWLDPLR 58
                67799999999999**********9886 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.9
     AbiEi_4 27 salrrL 32
                +a rrL
  KIR64972.1 70 KAARRL 75
                555554 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.3e-05      0.15      15      51 ..      16      54 ..      13      82 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.3e-05
                HCTTTS..EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSE CS
      MarR_2 15 grrpgr..dltvgelarrlglsksavsrilkrLvaaGLv 51
                + r+gr    +   l + lg+ ++av  ++ r+v++G++
  KIR64972.1 16 RPRGGRapVAALVKLLAPLGIAPPAVRTAVSRMVRQGWL 54
                5555553211444455579*******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2262.42
//
Query:       KIR64973.1  [L=491]
Description: peptidase M17 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.6e-105  351.3   0.0   5.7e-105  351.0   0.0    1.1  1  Peptidase_M17    Cytosol aminopeptidase family, catalytic dom
    8.2e-12   45.1   1.8    1.2e-11   44.5   0.3    2.1  2  Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal do


Domain annotation for each model (and alignments):
>> Peptidase_M17  Cytosol aminopeptidase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.0   0.0  6.4e-109  5.7e-105       2     310 ..     176     483 ..     175     484 .. 0.95

  Alignments for each domain:
  == domain 1  score: 351.0 bits;  conditional E-value: 6.4e-109
                    HHHHHHHS-TTTS-HHHHHHHHHHH.HTCCTEEEEEEEECHHHHHTT-HHHHHHHTTSSSS--EEEEEEEE-SSTTSEEEEEEEEEEEEEE-TTSS CS
  Peptidase_M17   2 lardlvntpaneltpeklaeeaeel.akeagkvevevldeeeleekgmgallaVgkgSeeepprlveleykgakekekklalVGKGitfDtGGlsl 96 
                    lardl+ntp+++ +p+ +ae++e++ a++ + ++++v++ +el+++g+g++laVg gS+ + prlvel++++a+ ++ +++lVGKGitfDtGG+s+
     KIR64973.1 176 LARDLTNTPSSVKNPQWFAEQVEAAvADRPD-LRLRVRQPDELAAEGFGGILAVGGGSA-SGPRLVELDWHPAD-ARTHVVLVGKGITFDTGGISI 268
                    89*******************9985366665.9*************************5.5***********96.********************* PP

                    --HHHHTTGGGGGHHHHHHHHHHHHHHHHT-SSEEEEEEEEEEE--STTSTTTTEEEE-TTS-EEEES-TTGCHHHHHHHHHHHHHGCT--SEEEE CS
  Peptidase_M17  97 KpsasmeemkaDmgGAAavlgalkavaelklpvnvvavlplaeNmisgkavkpgdvitamnGktvevlnTDaEGRLvLADalayaeekekpdlivd 192
                    Kp  +m+ m++Dm+GAAav++a+  +a+l+lpv++++++plaeN++sg+a++pgdvit++ G t e +n+DaEGRLvLADalaya  + kpdl++d
     KIR64973.1 269 KPVPAMKLMRKDMAGAAAVVAATLGAAALRLPVRITTLAPLAENAVSGSAFRPGDVITHYGGVTSETTNSDAEGRLVLADALAYAVAELKPDLLID 364
                    *************************************************************************************9999******* PP

                    EE---THHHHHHTTTSEEEEES-HHHHHHHHHHHHHHS-EEEE----HHHGGGG--SSSSEESS-SSSSTHHHHHHHHHHTTSSE..CGEEEEE-T CS
  Peptidase_M17 193 vATLTgavvvalGkkaaglfsnddelaeelekageeagervwrlpleeeykkqlkskvaDlknvgkkrragaitAalFLkefvke..tpWaHlDia 286
                    +ATLTga +valGk++ +l+s++dela+++ +a ++age +wr+pl ++y + l s+vaDl    + + +g++ Aal+L+ef+++  ++W+H+D++
     KIR64973.1 365 LATLTGANMVALGKRTGALYSDNDELAADVLAAIDAAGESAWRMPLPADYVEYLGSDVADLYSAPN-QGGGSVLAALYLREFTGDlrQRWLHVDMS 459
                    ***************************************************************999.788*************666566******* PP

                    TTTES.BTTB.S..EE--TTHHHH CS
  Peptidase_M17 287 gtalkekealkkekgatGvgvrtL 310
                    ++++++ +a + ++gatG+gvr L
     KIR64973.1 460 APSWADGDAAELTRGATGWGVRGL 483
                    ****8777666669*******977 PP

>> Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.3   1.4e-15   1.2e-11      12     119 ..      37     136 ..      24     140 .. 0.86
   2 ?   -2.2   0.1       0.4   3.6e+03      73      92 ..     283     297 ..     247     317 .. 0.59

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 1.4e-15
  Peptidase_M17_N  12 paaekldealagllsellkegdftGkagevlvlralsgekakrvllVGLGkeeeltaealrkaagaaaralkgakvttiavalplegknsdeka 105
                      p+  +l ++  ++ ++l  +  +tG agev+v  +++ +   r+llVG G+ +e     +r a++a ar+++g+   ti++ ++     +++++
       KIR64973.1  37 PGLPALADDVLAEAAALAPAARATGRAGEVHVHLRPGRV-PARLLLVGAGDGDE---SGWRAAGAALARSASGETHLTIMMPVD----VEPDAV 122
                      55566666777788999999*******************.************97...99**************66666666666....888*** PP

  Peptidase_M17_N 106 eaaaegallglYrf 119
                      + ++eg+ll++Yrf
       KIR64973.1 123 RGLVEGLLLASYRF 136
                      *************9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.4
  Peptidase_M17_N  73 kaagaaaralkgakvttiav 92 
                       aa+++a+       + +a+
       KIR64973.1 283 GAAAVVAA-----TLGAAAL 297
                      23333333.....3333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3684.30
//
Query:       KIR64974.1  [L=190]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-19   67.9   0.0    7.4e-19   67.8   0.0    1.0  1  Methyltransf_3   O-methyltransferase
      4e-15   56.7   0.1    6.3e-15   56.1   0.1    1.3  1  Methyltransf_24  Methyltransferase domain
    6.3e-07   30.0   0.2    1.8e-06   28.6   0.0    1.8  2  Methyltransf_25  Methyltransferase domain
    2.2e-05   25.0   0.3    7.1e-05   23.4   0.0    1.9  2  Methyltransf_11  Methyltransferase domain
    0.00038   20.3   0.0    0.00051   19.9   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.021   14.3   0.0      0.043   13.4   0.0    1.5  1  MTS              Methyltransferase small domain
      0.055   13.0   0.6        3.7    7.0   0.0    2.3  2  Glu_dehyd_C      Glucose dehydrogenase C-terminus
      0.092   12.5   0.1       0.13   12.0   0.1    1.2  1  Methyltransf_16  Lysine methyltransferase
        2.5    8.0   7.8         55    3.7   0.0    4.1  4  TetR_N           Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   3.7e-22   7.4e-19      31     207 ..      17     185 ..       3     190 .] 0.89

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 3.7e-22
                     --HHHHHHHHHHHHHHT--EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GG.GEEEEES-HHHHHHHHHTSSS---E CS
  Methyltransf_3  31 vsvdegqfLslLvklvnakrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvae.kieliegdalkvLeelvkdkklpef 124
                     v++  g  L+lL    +a+ v+eiG+ tG s + +  ++  DG +++id++ e+  ia++++  ag+   +  +i+g al+vL +l ++     +
      KIR64974.1  17 VTPGTGAALRLLAAAGSARAVVEIGTGTGVSGVWLLRGMRADGVLTTIDVEVEHQRIARRIFAEAGFPSgRTRIITGRALEVLPRLADGA----Y 107
                     6667788999********************************************************9643899*************9887....9 PP

                     EEEEE-S-GGGHHHHHHHHHHTEEEEEEEEEE-TTGGGGGG-SS--SHHHHH.....HHHHHHHHTT-TTEEEEEE-SBT-EE CS
  Methyltransf_3 125 DfifvDaDkssyvnyyeklleLvkvGgliaiDntLWeGkvveeddeeakalreyravllelnkklaeDprveisllsvgDGit 207
                     D++fvD +  ++      +l+L+++Gg++a+  tL  G + ++ +   ++++  r+ +    k+l e +    +ll+vg G+ 
      KIR64974.1 108 DMVFVDTEATNFSSCVAAALRLLRRGGVLALHGTLADGRIGDPAARDVETVT-TRETI----KALRESEDWTPALLPVGHGLL 185
                     ******************************************9999999888.55555....566666666677777777765 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.1   3.1e-18   6.3e-15       1     104 [.      38     139 ..      38     141 .. 0.86

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 3.1e-18
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpg.aeeaaalareagldd.rvrlikadseealaslaagsiDllfiDgghaaeavledleall 92 
                      vEiG+  Gvs +wllr +r+ g   l+++d + + ++ a+++++eag+ + r r+i +++ e+l++la+g +D++f+D +  a+     + a+l
       KIR64974.1  38 VEIGTGTGVSGVWLLRGMRADGV--LTTIDVEVEhQRIARRIFAEAGFPSgRTRIITGRALEVLPRLADGAYDMVFVDTE--ATNFSSCVAAAL 127
                      8*******************995..999988772133356666666665439**************************76..8999999***** PP

  Methyltransf_24  93 prlapggvvlfd 104
                      ++l++ggv+ ++
       KIR64974.1 128 RLLRRGGVLALH 139
                      **********99 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.9   3.8e+03       7      18 ..      20      31 ..       1      36 [. 0.62
   2 !   28.6   0.0     9e-10   1.8e-06       1      97 []      37     134 ..      37     134 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.9
                     TTSHHHHHHHCT CS
  Methyltransf_25  7 GtGrltlalakr 18
                     GtG  ++ la++
       KIR64974.1 20 GTGAALRLLAAA 31
                     666666666655 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 9e-10
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCG.BS.SSTTTEEEEEEESTGGGSSHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeegl...nvefvqgdaed.lp.fedgsfDlvvssgalhhlsdedlekalke 88 
                      v+++G+GtG    +l++ +  ++ +t +D+  e  ++ar+ ++e+g+   + ++++g a + lp ++dg +D+v++  +       +   +++ 
       KIR64974.1  37 VVEIGTGTGVSGVWLLRGMRaDGVLTTIDVEVEHQRIARRIFAEAGFpsgRTRIITGRALEvLPrLADGAYDMVFVDTE-----ATNFSSCVAA 125
                      89***************99548999*******************999999*********6647757**********533.....34567999** PP

                      HHHHEEEEE CS
  Methyltransf_25  89 iarvLkpgG 97 
                      + r+L+ gG
       KIR64974.1 126 ALRLLRRGG 134
                      ******999 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0         1   2.1e+03       5      20 ..      19      35 ..      14      40 .. 0.75
   2 !   23.4   0.0   3.6e-08   7.1e-05       2      95 ..      39     137 ..      38     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1
                     -TTSHHHHHHHHTT.SE CS
  Methyltransf_11  5 cGtGrlaealakrg.ar 20
                      GtG+ ++ la +g ar
       KIR64974.1 19 PGTGAALRLLAAAGsAR 35
                     699*****999888633 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 3.6e-08
                      EET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECCC.TS.S-TT-EEEEEEES-CCC-CCHHHHHHHHHHH CS
  Methyltransf_11   2 dvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl...kvefvvadaek.lp.fednsfDlvvssevlhhvedpekalkeiaRv 87 
                      ++G+GtG    +l +     + ++++D+  e  ++a++   e+g+   + +++ ++a + lp ++d+ +D+v++        + +++++ + R+
       KIR64974.1  39 EIGTGTGVSGVWLLRGMradGVLTTIDVEVEHQRIARRIFAEAGFpsgRTRIITGRALEvLPrLADGAYDMVFVDTEA---TNFSSCVAAALRL 129
                      89***********933356799**************999999999***999*******95577*********998644...5668********* PP

                      EEEEEEEE CS
  Methyltransf_11  88 LkpgGllv 95 
                      L+ gG+l+
       KIR64974.1 130 LRRGGVLA 137
                      *****997 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.5e-07   0.00051       4     109 ..      34     138 ..      31     175 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.5e-07
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld..nveFeqgdiee.leklledekfDlilsnevlnaladpdkil 94 
                      +  v+++G+GtG  +  l + ++ ++ ++ iD + e  + Ar + ++ g+   + +   g + e l+  l+d  +D+++ +      ++  ++ 
       KIR64974.1  34 ARAVVEIGTGTGVSGVWLLRGMRADGVLTTIDVEVEHQRIARRIFAEAGFPsgRTRIITGRALEvLPR-LADGAYDMVFVD---TEATNFSSCV 123
                      56799**************99999999***********************989999999********9.799********9...6779999999 PP

  Methyltransf_31  95 eeiervlkpggilli 109
                        + r+l+ gg+l++
       KIR64974.1 124 AAALRLLRRGGVLAL 138
                      99999***9999875 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.1e-05     0.043      17     102 ..      18     111 ..      13     140 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.1e-05
                 -HHHHHHHHHCHCC.TCSEEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGC......EEEEE-STTTTSTTS-EEEEE CS
         MTS  17 DkGsklLletlpke.lsgkvlDlGcGaGvlgaalakespeae.vtlvdvdarAlesakenleankle......vevvasdvleeveekkfdliv 102
                   G+   l+ l ++  ++ v+ +G+G+Gv g++l++       +t +dv+ +  ++a++ +++ ++       ++ +a +vl  ++++ +d++ 
  KIR64974.1  18 TPGTGAALRLLAAAgSARAVVEIGTGTGVSGVWLLRGMRADGvLTTIDVEVEHQRIARRIFAEAGFPsgrtriITGRALEVLPRLADGAYDMVF 111
                 5677788888888878889***************99766555599*****99999999999998887777444444555666667778888774 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.011        23     105     144 ..      28      68 ..      10      80 .. 0.80
   2 ?    7.0   0.0    0.0019       3.7     102     136 ..     108     145 ..      94     164 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.011
  Glu_dehyd_C 105 vEaTGsakhafeaiealapnGvaaLlGvpeds.evevdgge 144
                  + a Gsa++++e  +  +  Gv  L G+ +d     +d++ 
   KIR64974.1  28 LAAAGSARAVVEIGTGTGVSGVWLLRGMRADGvLTTIDVEV 68 
                  5689************************9986444555544 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0019
  Glu_dehyd_C 102 dlv...vEaTGsakhafeaiealapnGvaaLlGvpeds 136
                  d+v    EaT  +  + +a++ l+  Gv aL G  +d 
   KIR64974.1 108 DMVfvdTEATNFSSCVAAALRLLRRGGVLALHGTLADG 145
                  4441136**************************88776 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   6.4e-05      0.13      45      78 ..      32      66 ..      20      83 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.4e-05
  Methyltransf_16 45 lsklsvlELGsGtGlvGlavaell.peakviltDl 78
                      s + v+E+G GtG+ G+ + + +  +  ++  D+
       KIR64974.1 32 GSARAVVEIGTGTGVSGVWLLRGMrADGVLTTIDV 66
                     57789*************99887533333333344 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.027        55       2      18 ..       2      18 ..       1      19 [. 0.93
   2 ?    1.6   0.3      0.12   2.4e+02       4      29 ..      23      47 ..      21      51 .. 0.84
   3 ?    3.2   0.1     0.039        77       5      21 ..      74      90 ..      72      95 .. 0.79
   4 ?    0.7   0.1      0.23   4.6e+02       3      16 ..     124     137 ..     123     139 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.027
                HHHHHHHHHHHHTTT-- CS
      TetR_N  2 ldaArelfaerGydatt 18
                l +Ar l  e G da+t
  KIR64974.1  2 LRTARSLAREVGLDAVT 18
                789************98 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
                HHHHHHHHHHTTT--HHHHHHHHTSS CS
      TetR_N  4 aArelfaerGydattvreIAkrAGvs 29
                aA++l+a  G +++ v eI    Gvs
  KIR64974.1 23 AALRLLAAAGSARA-VVEIGTGTGVS 47
                9*******999988.77887777776 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.039
                HHHHHHHHHTTT--HHH CS
      TetR_N  5 ArelfaerGydattvre 21
                Ar+ fae G+ +  +r 
  KIR64974.1 74 ARRIFAEAGFPSGRTRI 90
                99*******98877665 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHTTT CS
      TetR_N   3 daArelfaerGyda 16 
                 +aA++l+ + G  a
  KIR64974.1 124 AAALRLLRRGGVLA 137
                 89******999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.50
# Mc/sec: 1141.95
//
Query:       KIR64975.1  [L=444]
Description: peptidase S1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-32  112.9   7.5    2.5e-32  112.9   7.5    2.4  3  Trypsin_2      Trypsin-like peptidase domain
    8.8e-17   61.2   0.3      7e-16   58.3   0.0    2.4  2  PDZ_2          PDZ domain
    1.1e-13   51.5   0.6    1.9e-13   50.8   0.6    1.3  1  Trypsin        Trypsin
      7e-11   41.8   0.0    2.3e-10   40.2   0.0    2.0  1  PDZ_6          PDZ domain
    2.3e-05   24.7   0.1    9.6e-05   22.7   0.0    2.0  2  PDZ            PDZ domain
  ------ inclusion threshold ------
      0.023   13.4   7.0       0.36    9.4   0.2    2.5  3  Peptidase_S46  Peptidase S46


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.9      0.63   1.9e+03     125     141 ..     110     126 ..     100     130 .. 0.82
   2 !  112.9   7.5   8.3e-36   2.5e-32       1     150 []     169     310 ..     169     310 .. 0.91
   3 ?   -3.5   0.0       5.8   1.7e+04      91     112 ..     400     426 ..     375     439 .. 0.58

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.63
   Trypsin_2 125 lqtdaatspGsSGGplf 141
                 l ++ a+ +G+ GGp++
  KIR64975.1 110 LGYAFAVRGGAAGGPVL 126
                 567789999******97 PP

  == domain 2  score: 112.9 bits;  conditional E-value: 8.3e-36
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggeks 99 
                 GsGf+v++dg+++Tn Hvv++ +g+a         ++++dg + +a+vv+ dpe+D+A++kv   ++++l+p+++g+s+al++g+pv ++G pl   + 
  KIR64975.1 169 GSGFIVSADGYVITNDHVVAGGTGKAS--------VVFNDGSTAAASVVGQDPESDIAVIKV--ASATNLRPVEFGDSDALAVGDPVLAIGSPLSLAN- 256
                 9**************************........9**************************..**********************************. PP

   Trypsin_2 100 gsvssGivsgvve....sesaasgegesfl....qtdaatspGsSGGplfdsdGrvvGl 150
                  +v++Givs++++    +    +++         qtdaa+++G+SGGpl+ds+Grv+G+
  KIR64975.1 257 -TVTAGIVSALDRtmqaGDPGGPTR----YyaaiQTDAAVNHGNSGGPLVDSAGRVIGV 310
                 .9***********753322233333....23467************************8 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 5.8
   Trypsin_2  91 Gyplggeksg.....svssGivsgvve 112
                 G p+ ++        +++ G+v  v+ 
  KIR64975.1 400 GRPMTDPTDLialvrKFAPGSVVTVEY 426
                 555555554455555555565555555 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.42   1.3e+03       6      41 ..     207     248 ..     205     253 .. 0.62
   2 !   58.3   0.0   2.4e-19     7e-16       2      82 .]     355     439 ..     354     439 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.42
                 X------..-EEEEEE-TTSGGGGT.--T......T-EEEEE CS
       PDZ_2   6 svsdeedtggvlvvsVkeggPaakaglka......gDvilkv 41 
                 sv+ +++++ + v++V +++      +        gD +l++
  KIR64975.1 207 SVVGQDPESDIAVIKVASATNLRPVEFGDsdalavGDPVLAI 248
                 566777778888888888776554444433333337777776 PP

  == domain 2  score: 58.3 bits;  conditional E-value: 2.4e-19
                 ...XX------......-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEEE- CS
       PDZ_2   2 ylGvsvsdeed....tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvevkl 82 
                 ++G++v         tggv  +sV+++gPaa+agl+agDvil + g+++++ +dli l++k  pG+ V++++ R++ +++++v+l
  KIR64975.1 355 VIGAQVGGTGAasggTGGVRLASVEPSGPAAGAGLRAGDVILRLAGRPMTDPTDLIALVRKFAPGSVVTVEYRRGSSRQNASVTL 439
                 588888888888888********************************************************************97 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.6   6.3e-17   1.9e-13      25     200 ..     167     316 ..     148     342 .. 0.74

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 6.3e-17
                 EEEEEEEEETT.EEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCSTTHTTSTTTEE CS
     Trypsin  25 hlCgGslisen.wvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpvgttc 122
                    +G+++s++ +v+T+ H+v +       +g+ +++ ++g+   ++v         +p+    Dia++k+++      + rp++  + s+ l+vg+ +
  KIR64975.1 167 SEGSGFIVSADgYVITNDHVVAG------GTGKASVVFNDGSTAAASVVG------QDPES---DIAVIKVASA----TNLRPVEFGD-SDALAVGDPV 245
                 44689*****99**********9......457777788888644444444......56665...*********9....9*********.6769***999 PP

                 EEEESSBSSTSSBSSBEEEEEEEEEEHHHHHHH..TTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEE.S CS
     Trypsin 123 lvsGwgrtkekgksdtlqevevpvvsretcksa..ykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswg.k 200
                 l++G +        +t++ + v++++r     +   ++      ++++a     + ++G+SGGPlv s g ++G++s    
  KIR64975.1 246 LAIGSPLS--LA--NTVTAGIVSALDRTMQAGDpgGPT-RYYAAIQTDA-----AVNHGNSGGPLVDSAGRVIGVNSTIkS 316
                 99999886..44..67999********86666554444.4456688888.....***********************7731 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   7.5e-14   2.3e-10       3      56 .]     376     428 ..     374     428 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 7.5e-14
       PDZ_6   3 taVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallr.gsagesvvlvvrr 56 
                  +V+p +PA+ AGlr+GD+il + G+p   ++++d++al+r  ++g+ v+++ rr
  KIR64975.1 376 ASVEPSGPAAGAGLRAGDVILRLAGRPM--TDPTDLIALVRkFAPGSVVTVEYRR 428
                 58**************************..***********99999999999887 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   3.3e+03      40      54 ..     235     249 ..     208     265 .. 0.81
   2 !   22.7   0.0   3.2e-08   9.6e-05       9      66 ..     353     411 ..     348     427 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
                 HHHTSSTTEEEEEET CS
         PDZ  40 eadglkvGDkIlsvN 54 
                 + d l vGD +l+++
  KIR64975.1 235 DSDALAVGDPVLAIG 249
                 455599999999997 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 3.2e-08
                 TSESSEEEEEETTSS.SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHH CS
         PDZ   9 rgglGfslkggsdqr.gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheea 66 
                 r  +G+++ g  +++ g  g+  ++v+p g+a+ +gl++GD+Il+  g+++++ +++ a
  KIR64975.1 353 RTVIGAQVGGTGAASgGTGGVRLASVEPSGPAAGAGLRAGDVILRLAGRPMTDPTDLIA 411
                 5668999998888888999**********9999999************99998766554 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   0.00012      0.36      48      73 ..     168     193 ..     151     203 .. 0.79
   2 ?   -1.3   0.0      0.21   6.2e+02     239     264 ..     264     289 ..     257     293 .. 0.80
   3 ?    6.8   0.8   0.00076       2.3     632     651 ..     292     311 ..     284     321 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00012
                    TEE-EE-STT-EEEE-HHHHHHHHHH CS
  Peptidase_S46  48 gCtasfVSpeGLvlTNHHCaygaiqq 73 
                      ++ +VS++G v+TN H++ g   +
     KIR64975.1 168 EGSGFIVSADGYVITNDHVVAGGTGK 193
                    47999**************9886555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.21
                    -TT-EEEEEE------TT--HHHHHH CS
  Peptidase_S46 239 kegdlvfvlGyPGstsRyltsaelee 264
                    ++ d ++ +G PG   Ry  + + + 
     KIR64975.1 264 SALDRTMQAGDPGGPTRYYAAIQTDA 289
                    56699*************99887665 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.00076
                    -TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 632 tGGNSGSPvlngkgelvGla 651
                      GNSG P++++ g+++G++
     KIR64975.1 292 NHGNSGGPLVDSAGRVIGVN 311
                    56****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 3101.49
//
Query:       KIR64976.1  [L=142]
Description: preprotein translocase subunit TatB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.057   13.1   0.0      0.061   13.0   0.0    1.2  1  DUF3394        Domain of unknown function (DUF3394)
       0.11   12.1   0.1       0.16   11.6   0.1    1.3  1  MoCF_biosynth  Probable molybdopterin binding domain
       0.11   11.8   0.2       0.24   10.8   0.2    1.5  1  MttA_Hcf106    mttA/Hcf106 family


Domain annotation for each model (and alignments):
>> DUF3394  Domain of unknown function (DUF3394)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     1e-05     0.061      24     109 ..       2      86 ..       1     119 [. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1e-05
     DUF3394  24 ltrsrlyEsvlLLlvaftLfrPgffldlisppyeelepselvevveelpkgselrlkvegenlegeeiektvalplgeeatgeerL 109
                 +    ++E+++LLl+a+ +f  + + + is+  + +   + ++  ++ + ++el   ++ e+l+ +   ++  l+ ++e++ ++ L
  KIR64976.1   2 FENLNWWEIAALLLLALLIFG-DRLPNVISDGLRMVRNLRAMARNATGDLSRELGTDIQLEDLHPKAFIRKHLLSEEDEQAIRKPL 86 
                 56678************9995.4445555555555554444444455555667777777777777777766666666666665555 PP

>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   2.6e-05      0.16      35      71 ..      96     134 ..      75     139 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.6e-05
                    EEEEE-SSHHHHHHHH..HHHHHTSSEEEEESS-SSSTT CS
  MoCF_biosynth  35 kytvvpDdeeeikeal..laaleeadviittGGtGptpd 71 
                    ++t v Dd +++++a+  ++++ +  v  t+GGt p+p+
     KIR64976.1  96 DVTAVHDDLKDVAKAVdlKSTAPGGAVTATSGGTAPAPR 134
                    6889************965555555***********998 PP

>> MttA_Hcf106  mttA/Hcf106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   3.9e-05      0.24       3      25 ..       7      28 ..       5      30 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHHHHHHS-TTTHHHH CS
  MttA_Hcf106  3 apelliIlvValllFGpkkLPEv 25
                 ++e++ +l+ all+FG ++LP v
   KIR64976.1  7 WWEIAALLLLALLIFG-DRLPNV 28
                 8***************.788876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 951.21
//
Query:       KIR64977.1  [L=382]
Description: sodium:proton antiporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-89  297.4   0.0    8.9e-89  297.2   0.0    1.1  1  ParA             NUBPL iron-transfer P-loop NTPase
    3.2e-18   65.7   1.2    3.2e-18   65.7   1.2    2.1  2  FeS_assembly_P   Iron-sulfur cluster assembly protein
    2.4e-14   53.5   0.0    3.3e-13   49.8   0.0    2.3  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
    9.9e-09   35.4   0.8    1.6e-07   31.4   0.8    2.1  1  AAA_31           AAA domain
    7.9e-07   28.6   0.0    1.2e-06   28.0   0.0    1.4  1  MipZ             ATPase MipZ
    4.7e-06   26.2   0.0     0.0013   18.3   0.0    2.3  2  Fer4_NifH        4Fe-4S iron sulfur cluster binding proteins,
    3.8e-05   23.6   0.8      0.095   12.5   0.0    2.2  2  AAA_26           AAA domain
    0.00057   19.4   0.6      0.088   12.3   0.3    2.4  2  CBP_BcsQ         Cellulose biosynthesis protein BcsQ
     0.0013   18.0   0.5     0.0025   17.1   0.2    1.6  2  ArsA_ATPase      Anion-transporting ATPase
  ------ inclusion threshold ------
      0.015   14.9   0.5      0.027   14.1   0.0    1.8  2  AAA_25           AAA domain
      0.031   14.1   0.0      0.055   13.3   0.0    1.4  1  CLP1_P           mRNA cleavage and polyadenylation factor CLP
      0.047   12.7   0.9       0.11   11.4   0.3    1.8  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.064   12.5   1.0      0.071   12.4   0.1    1.4  2  VirC1            VirC1 protein
      0.083   11.6   0.0       0.14   10.8   0.0    1.4  1  Chorismate_synt  Chorismate synthase
       0.13   12.1   0.0       0.37   10.7   0.0    1.7  1  APS_kinase       Adenylylsulphate kinase
       0.15   11.1   0.6       0.38    9.8   0.2    1.8  2  LpxK             Tetraacyldisaccharide-1-P 4'-kinase


Domain annotation for each model (and alignments):
>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.2   0.0   7.9e-92   8.9e-89       4     245 ..     119     363 ..     116     364 .. 0.95

  Alignments for each domain:
  == domain 1  score: 297.2 bits;  conditional E-value: 7.9e-92
        ParA   4 kviavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgveeekpeqsekkliPveakgikvmSigfllesedeavvwrGpmkskaikq 102
                 +v+av+SgKGGVGKS+v+vnlA+aLa++gl+vg++DaDiyG+s+pr+lg++++ p++ e+ ++P +a+g+kv+Sig++++  ++avvwrGpm+++a++q
  KIR64977.1 119 RVYAVASGKGGVGKSSVTVNLAAALAARGLNVGVVDADIYGHSVPRMLGADGR-PTRVEDLIMPPQAHGVKVISIGMFTS-GNAAVVWRGPMLHRALQQ 215
                 799*************************************************6.7777779******************9.****************** PP

        ParA 103 llkdvewgelDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteifgkgggeklaeel 201
                 +l+dv+wg+lD+L++DlPPGtgD+++++aq lp a++++Vttpq +a++++++a +++ +++++v+Gv+eNms++  p+ g+++e+fg+ggg+++ae+l
  KIR64977.1 216 FLADVYWGDLDVLLLDLPPGTGDVAISLAQLLPNAEILVVTTPQAAAAEVAERAGAIALQTHQRVVGVIENMSWLELPD-GSRMEVFGSGGGTTVAESL 313
                 ******************************************************************************8.8999*************96 PP

        ParA 202 gv......pllgeipldpeireasdegkplvlkepeseaakaleeiaekv 245
                         pllg+ipld+++rea+d+g+p+vl+ep+s+aakal ++a+++
  KIR64977.1 314 TRtigaqvPLLGQIPLDTRVREAGDAGNPIVLAEPDSPAAKALGQVADRL 363
                 54444444**************************************9986 PP

>> FeS_assembly_P  Iron-sulfur cluster assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   1.2   2.9e-21   3.2e-18       1      72 [.       9      81 ..       9      83 .. 0.94
   2 ?   -2.1   0.1       4.1   4.5e+03      41      56 ..     254     269 ..     241     283 .. 0.68

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 2.9e-21
                    HHHHHHHHTT-B-TTTSSBCCCCT---EEEE-T.-EEEEEE--SSTT-TTHHHHHHHHHHHHC.STT--EEEE CS
  FeS_assembly_P  1 keavlaaLrtVtDPelgvdlvslglvreidieg.gkVsvditltypacslaeairadaeaalralpgvevveV 72
                    ++av+a L+tV DPe+ +++++lg+vr+ +i + g+V+v + lt ++c+l++ +rad+ aa++a+pgv+ ve+
      KIR64977.1  9 EDAVQASLATVDDPEIRRPITDLGMVRSAQIGDdGVVRVELLLTVAGCPLKDKLRADITAAVGAVPGVTGVEI 81
                    689****************************999*********************************666666 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.1
                     --SSTT-TTHHHHHHH CS
  FeS_assembly_P  41 tltypacslaeairad 56 
                      +t+p+ ++ae  +++
      KIR64977.1 254 VVTTPQAAAAEVAERA 269
                     4566888877766554 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0     3e-16   3.3e-13       2     128 .]     122     343 ..     121     343 .. 0.85

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 3e-16
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH.............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................. RF
        CbiA   2 aiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep.............................................. 54 
                 a+as+kGGvGK+++++nLa+ala rgl+V +vDaD  + +     g  ++  +                                              
  KIR64977.1 122 AVASGKGGVGKSSVTVNLAAALAARGLNVGVVDADIYGHSVPRMLGADGRPTRvedlimppqahgvkvisigmftsgnaavvwrgpmlhralqqfladv 220
                 89***********************************9998865555444444788******************************************* PP

                 .......................................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHHHH CS
                 .......................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 .......................................................dlkrllellealgkkkalllkiagvvlnrvdgeneetllkeale 98 
                                                                        + +r+++++e+++       ++ g     +++    t   e+l+
  KIR64977.1 221 ywgdldvllldlppgtgdvaislaqllpnaeilvvttpqaaaaevaeragaialqTHQRVVGVIENMSWL----ELPDGSRMEVFGSG-GGTTVAESLT 314
                 ***************************************9999988888777666666666666666543....67777777777776.5677777777 PP

                 HHHHHCTS-EEEEEE--CCHCCCCHHTS-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  99 elkqrygvpvlgviprdeavaeapargepv 128
                 +++    vp+lg ip d++v ea   g+p+
  KIR64977.1 315 RTI-GAQVPLLGQIPLDTRVREAGDAGNPI 343
                 765.359***************99999886 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.8   1.5e-10   1.6e-07       2      40 ..     119     157 ..     118     281 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.5e-10
      AAA_31   2 kvIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDp 40 
                 +v a+a  KGGvGK+  +vnlaaala +g  v +vD+D 
  KIR64977.1 119 RVYAVASGKGGVGKSSVTVNLAAALAARGLNVGVVDADI 157
                 7899**********************************6 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.1e-09   1.2e-06       4      63 ..     122     181 ..     119     258 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.1e-09
                 EE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT---- CS
        MipZ   4 vlgnekGGsGksttavhvavaLlkkGarvaaidldlrqrtlarylenraataerkglsLp 63 
                  ++  kGG Gks ++v +a aL+++G++v+++d d+  +++ r l+     ++ ++l +p
  KIR64977.1 122 AVASGKGGVGKSSVTVNLAAALAARGLNVGVVDADIYGHSVPRMLGADGRPTRVEDLIMP 181
                 68899***********************************99999876666666666555 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.1e-06    0.0013       6      55 ..     125     174 ..     120     207 .. 0.83
   2 !    6.0   0.0    0.0064       7.2     191     256 ..     308     375 ..     219     379 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.1e-06
   Fer4_NifH   6 yGkGGiGksttsqnlsaalaemgkkvlivGCDPkaDstrlllggkaqetv 55 
                  GkGG+Gks  + nl+aala++g  v +v  D    s   +lg+   +t 
  KIR64977.1 125 SGKGGVGKSSVTVNLAAALAARGLNVGVVDADIYGHSVPRMLGADGRPTR 174
                 59************************999999888887777777666665 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0064
   Fer4_NifH 191 eliekfaeelgtk..vlevvPrdeivrkaelrkktvieyapeseqakeyrelarkilenkklviPkpl 256
                  ++e +++++g +  +l  +P+d  vr+a  + + ++  +p+s+ ak   ++a++++  ++ ++ kpl
  KIR64977.1 308 TVAESLTRTIGAQvpLLGQIPLDTRVREAGDAGNPIVLAEPDSPAAKALGQVADRLAVRRESLLGKPL 375
                 56777888887652279**************************************9999999988887 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.2   0.00075      0.84       5      34 ..     123     152 ..     119     154 .. 0.89
   2 !   12.5   0.0   8.5e-05     0.095     117     195 ..     237     334 ..     230     336 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00075
      AAA_26   5 vtgtdtgvGKTvvslgLvralkrkgvkvgy 34 
                 v++   gvGK++v+  L++al ++g +vg+
  KIR64977.1 123 VASGKGGVGKSSVTVNLAAALAARGLNVGV 152
                 7778889********************997 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 8.5e-05
      AAA_26 117 ellnadiaknl.gapvilVargglgtinqllltieal.rqknvrvlGvilNk..vrnpe..............nvetlekksg..ipvlGvvPylpdle 195
                 +++ + +a+ l +a++++V++++  + + ++ ++ a   q++ rv+Gvi N   +  p+                e+l+ ++g  +p+lG++P +++++
  KIR64977.1 237 GDVAISLAQLLpNAEILVVTTPQAAA-AEVAERAGAIaLQTHQRVVGVIENMswLELPDgsrmevfgsgggttVAESLTRTIGaqVPLLGQIPLDTRVR 334
                 57788889998566666666666555.55555555551699**********95423332444555556666667777777766778*******998876 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.3   7.9e-05     0.088      10      38 ..     127     155 ..     119     158 .. 0.91
   2 ?    4.9   0.0     0.014        16     104     151 ..     212     261 ..     184     278 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.9e-05
    CBP_BcsQ  10 RGGvGttsllaaLawalhelgesvlviDl 38 
                 +GGvG++s+++ La al + g +v v+D+
  KIR64977.1 127 KGGVGKSSVTVNLAAALAARGLNVGVVDA 155
                 7**************************97 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.014
    CBP_BcsQ 104 allaalkelk.eqyrwillDlpagasaltrellal.adlvllvvepdanc 151
                 al+++l+ +  ++ + +llDlp g+ +++ +l +l  + ++lvv++ +++
  KIR64977.1 212 ALQQFLADVYwGDLDVLLLDLPPGTGDVAISLAQLlPNAEILVVTTPQAA 261
                 5566666666788999*********9999887764256666666544433 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   2.2e-06    0.0025       5      38 ..     123     156 ..     119     176 .. 0.89
   2 ?   -2.7   0.0       2.4   2.7e+03     115     137 ..     215     238 ..     212     256 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.2e-06
                  EEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase   5 lvgGKGGVGKttvsaatavklsekgkkvllistD 38 
                  + +GKGGVGK++v   +a+ l+  g +v ++  D
   KIR64977.1 123 VASGKGGVGKSSVTVNLAAALAARGLNVGVVDAD 156
                  569**********************999998877 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.4
                  HHHHHHHCSSSSEEEEESBS.CCH CS
  ArsA_ATPase 115 ellkyvkeeeydvvvlDtaP.TGh 137
                  ++l  v   + dv++lD +P TG+
   KIR64977.1 215 QFLADVYWGDLDVLLLDLPPgTGD 238
                  555566667889*****9996675 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.4e-05     0.027      34      62 ..     120     149 ..      89     196 .. 0.87
   2 ?   -3.9   0.1       7.7   8.6e+03     171     187 ..     261     277 ..     255     284 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
      AAA_25  34 elallaGapgtGKttlaldlalava.tGkp 62 
                   a+  G +g+GK+ ++++la+a+a +G +
  KIR64977.1 120 VYAVASGKGGVGKSSVTVNLAAALAaRGLN 149
                 567889*******************88775 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 7.7
      AAA_25 171 aleriarrtgaavllvh 187
                 a++++a+r ga+ l +h
  KIR64977.1 261 AAAEVAERAGAIALQTH 277
                 44455555555554444 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.9e-05     0.055       1      33 [.     126     158 ..     126     177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.9e-05
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvG 33 
                 G+  +GKS+++ +L+  ++ +g ++ +vD+D+ 
  KIR64977.1 126 GKGGVGKSSVTVNLAAALAARGLNVGVVDADIY 158
                 66789**************************96 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3    0.0001      0.11      35      66 ..     125     156 ..     110     193 .. 0.86
   2 ?   -1.3   0.0      0.77   8.6e+02     149     197 ..     230     278 ..     224     290 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
                 EE-TTSSHHHHHHHHHHHHHCTT--EEEEEE- CS
        MeaB  35 tGvPGaGkstlvealglelrrrGkrvavlavD 66 
                  G  G+Gks ++ +l++ l++rG  v+v+  D
  KIR64977.1 125 SGKGGVGKSSVTVNLAAALAARGLNVGVVDAD 156
                 5899************************9877 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.77
                 EEESSTTTTTTT--CCCHHH-SEEEEE---HHHHHHHHHHHHHHHHHCS CS
        MeaB 149 lllpeaGDelqgikkGileiaDiivvnkaDkkeaekaarelraalelee 197
                 l lp +  ++    + +l  a+i+vv     ++ae a+r    al+ ++
  KIR64977.1 230 LDLPPGTGDVAISLAQLLPNAEILVVTTPQAAAAEVAERAGAIALQTHQ 278
                 4444444446666677889999999999999999999998888887665 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   6.3e-05     0.071       5      39 ..     122     156 ..     118     159 .. 0.93
   2 ?   -3.5   0.1       4.6   5.2e+03     132     162 ..     251     281 ..     239     293 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.3e-05
       VirC1   5 tfcslkGGaGkttalmglcsalasdgkrvalfead 39 
                 +++s kGG Gk++  + l +ala++g  v++ +ad
  KIR64977.1 122 AVASGKGGVGKSSVTVNLAAALAARGLNVGVVDAD 156
                 67999*****************************9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.6
       VirC1 132 elllaeelaipvailrqrvPvrrltssqrli 162
                 e+l+  +++  +a + +r  +  l++ qr++
  KIR64977.1 251 EILVVTTPQAAAAEVAERAGAIALQTHQRVV 281
                 6666666666667666676666666666543 PP

>> Chorismate_synt  Chorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013      0.14     195     234 ..      48      87 ..       9     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                      ES--TT-SBTTTB-HHHHHHHHHHTSTTEEEEEETTGGGG CS
  Chorismate_synt 195 kgvpaGlGepvfdkldakLakalmsipAvkgveiGsGfea 234
                      + + +  G p+ dkl a++ +a+ ++p+v gvei  G+ +
       KIR64977.1  48 ELLLTVAGCPLKDKLRADITAAVGAVPGVTGVEIEFGVMS 87 
                      445566799************************9888765 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00033      0.37       8      51 ..     125     168 ..     119     178 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00033
                 ESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--S CS
  APS_kinase   8 tGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgf 51 
                 +G  g GKs+++++l+ +L ++g +v ++d d   h + + Lg 
  KIR64977.1 125 SGKGGVGKSSVTVNLAAALAARGLNVGVVDADIYGHSVPRMLGA 168
                 7899****************************999988888875 PP

>> LpxK  Tetraacyldisaccharide-1-P 4'-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00034      0.38      46      71 ..     128     153 ..     125     177 .. 0.92
   2 ?   -1.4   0.0      0.86   9.7e+02      27      46 ..     179     198 ..     165     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00034
                 S-HSHHHHHHHHHHHTTTS..-EEEE CS
        LpxK  46 GGtGKTPlvialvkllqarglkvgvl 71 
                 GG GK ++++ l+ +l+argl+vgv+
  KIR64977.1 128 GGVGKSSVTVNLAAALAARGLNVGVV 153
                 9************************8 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.86
                 SS--B--SS-EEEEEESBSS CS
        LpxK  27 llkserlpvpVivVGNitvG 46 
                 ++  +  +v+Vi++G +t G
  KIR64977.1 179 IMPPQAHGVKVISIGMFTSG 198
                 66777889*******99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 2874.80
//
Query:       KIR64978.1  [L=206]
Description: hypothetical protein TK50_05415 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-39  133.3   0.2    3.1e-39  133.3   0.2    1.9  2  DUF1003   Protein of unknown function (DUF1003)


Domain annotation for each model (and alignments):
>> DUF1003  Protein of unknown function (DUF1003)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.2   1.7e-43   3.1e-39       1     104 []      40     142 ..      40     142 .. 0.98
   2 ?   -1.7   0.5      0.17   3.1e+03      83      98 ..     148     163 ..     144     171 .. 0.49

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 1.7e-43
     DUF1003   1 mGsakFlvlftaivilWialnllvlpglkpfDpypFillnlvlslqaalaaplIllsqnRqadrdrvraeedrqvnlkaeaeiekLtrevaalrealge 99 
                 mG+a+F+v++t+++++W+ +n+l+ p   +fDpy F++l+lvlslqa++aaplIll+qnRq+drdrv  eedr+++  ++a++e+L+revaalr+alge
  KIR64978.1  40 MGTANFIVYMTVVIAAWFGWNTLA-PADLRFDPYTFTFLTLVLSLQASYAAPLILLAQNRQTDRDRVALEEDRRRATMQKADTEYLAREVAALRIALGE 137
                 8********************885.8************************************************************************* PP

     DUF1003 100 vatrd 104
                 vatrd
  KIR64978.1 138 VATRD 142
                 **996 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.17
     DUF1003  83 iekLtrevaalrealg 98 
                 +++L++e+++ +++ +
  KIR64978.1 148 LARLAEELDEAAQRRQ 163
                 4444455444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1143  (0.0637515); expected 358.6 (0.02)
Passed bias filter:                      682  (0.0380389); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1566.38
//
Query:       KIR64979.1  [L=289]
Description: phenazine biosynthesis protein PhzF [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-49  168.3   0.0    2.8e-49  168.1   0.0    1.0  1  PhzC-PhzF  Phenazine biosynthesis-like protein


Domain annotation for each model (and alignments):
>> PhzC-PhzF  Phenazine biosynthesis-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.1   0.0   1.6e-53   2.8e-49       1     275 [.       9     272 ..       9     280 .. 0.87

  Alignments for each domain:
  == domain 1  score: 168.1 bits;  conditional E-value: 1.6e-53
                 EEET-SSTTSSEEEEEEESTTCS-HHHHHHHHHHHTSSEEEEEE--SSTTSSEEEEEE-SSSEES--HHHHHHHHHHHHHHCT-S-SCEEEEEETTEEE CS
   PhzC-PhzF   1 vdaFtespfkGNpaaVvldadelddeelqsiAaelnlseTaFllkpsdekarfrlRyFTPvaEvdlcGHatlasahalaekglvasaetveletkaGil 99 
                 vd+Ft+ pf GNp+aVv+ a++l  e++qs+A e+nlseT+F+l+p++  a +r R+FTP+ E++++GH+ +++a+    +gl     ++ +e+ aG l
  KIR64979.1   9 VDVFTDRPFAGNPLAVVFGAEGLATEQMQSLALEFNLSETVFVLPPTQVGATYRARIFTPTDELPFAGHPSVGAAVTASRRGLF-GVGQITQECGAGVL 106
                 8**************************************************************************999999987.999*********** PP

                 EE.EEEEETCEECCEEEEE-SEEEEEE-HHHHHHHHHHCCTSGG-TTS-BEEEESSSEEEEEEBSTCCHHHH----HHHHHHHCT-EEEEEEEETTTSS CS
   PhzC-PhzF 100 pvkslkekddgeellielkfPvikteevssedlallakllklaaqkalpiavkstglekvivplsseeavaelspdlaeeikkcpkkgvivtaaaeags 198
                 p+     + + +  ++   +P+  + e++ e l ++a+l++ + + + p+ v+ +gle   +p+ +  ava++  d  ++++    + + v  + ++++
  KIR64979.1 107 PI-----EVTAHGATLTGGVPTLGP-ELDLEPLLEMAGLTAAD-HAGPPPRVAGCGLEFPYLPVRPD-AVARARVDP-AAAQRYGLEHISV--FSWDAD 194
                 **.....456666778889999975.78999999999999999.99******************975.678888888.6677666666655..456666 PP

                 CCEEEEEEEEGGGTEEEESS-HHHHHHHHHHHHHCC-S..SSEEEEEEEE-GGGT--EEEEEEEE.E-TTCEEEEEEEE CS
   PhzC-PhzF 199 kkdfhsRmFaPklGivEDpvtGsAsgaLaaylseklnl..eesakikieqgqalgrsgtlevevevkvdkekervkvtG 275
                 ++  h+R F P  G+ EDp+tGsA+  L+ +l   + l  e++ + +++qg++l r++ l  +v+   +      +v+G
  KIR64979.1 195 SQTAHARVFVPGHGVPEDPATGSAALGLGVWLVASGLLpgEGRSSYTVRQGAELRRPSLLACTVTA-AGGAAVGATVRG 272
                 77778*******************************997788999****************99973.333444445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2184.43
//
Query:       KIR64980.1  [L=171]
Description: hypothetical protein TK50_05430 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      142  (0.00792013); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 1115.16
//
Query:       KIR64981.1  [L=232]
Description: haloacid dehalogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-12   48.4   0.0    2.2e-12   47.4   0.0    1.5  2  HAD_2           Haloacid dehalogenase-like hydrolase
    5.3e-10   39.9   0.0    2.7e-09   37.6   0.0    1.9  1  Hydrolase       haloacid dehalogenase-like hydrolase
    1.5e-05   24.9   0.0    0.00021   21.3   0.0    2.5  3  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
       0.02   15.3   0.2      0.032   14.6   0.2    1.4  1  HAD             haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1         1   4.5e+03       1      10 [.       7      16 ..       7      20 .. 0.87
   2 !   47.4   0.0     5e-16   2.2e-12      68     176 ..      85     191 ..      57     193 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1
       HAD_2  1 iiFDlDgTll 10
                ++FD+ gTl 
  KIR64981.1  7 VLFDFFGTLT 16
                79*****995 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 5e-16
       HAD_2  68 kyneekkkkevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsp.tDi 165
                 + ++      +++ d++  +L  L++ag++ g+v++ ++e + e+l ql +  ++dv v s + ++ KPdp++++ a+  l+l++ +++yvGD   + +
  KIR64981.1  85 RQRAVR--ADTRLRDEAVPVLTALRAAGVRTGLVSDCTHE-LPEFLPQLAVAPLLDVRVFSVQLGRCKPDPALYLSACGPLGLSPGDCLYVGDGGsQEL 180
                 333333..459999*********************98875.789*************************************************998*** PP

       HAD_2 166 eaakkagikvi 176
                  +a++ag++++
  KIR64981.1 181 TGARRAGMTAV 191
                 ********987 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   5.9e-13   2.7e-09       2     210 .]       5     187 ..       4     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 5.9e-13
                 SEEEEESBTTTBCHH..HHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH..HHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttge..psvedvivsaalalaaaletgsehpigkalvaaakar..sgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsq 96 
                 ++v+fD+ GTLt+       ++ ++++               +g   v a   +    + + +++  gr   a+   +w+ a+       a ++  +s+
  KIR64981.1   5 RAVLFDFFGTLTRCVqrGAAHRSTAEL---------------LGCP-VDA---LvdVLDRSYYQRASGRFGDAVATLRWVCAQ-------AGVHPPESA 77 
                 7999********555334444444444...............1111.222...1222333666666677777999999*****.......888888888 PP

                 CHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  97 grtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeeva 194
                  r ++    r +av +      +++ea+ ++ +L+aag++++l++   +e +e  + ql  +  +d+ + s   +  kp+p  ++ a+  L+ +p +++
  KIR64981.1  78 LRAAVAS--RQRAVRADT-R--LRDEAVPVLTALRAAGVRTGLVSDCTHELPE-FLPQLAvAPLLDVRVFSVQLGRCKPDPALYLSACGPLGLSPGDCL 170
                 8888888..777777664.5..8**********************88888777.777777688999999999999************************ PP

                 EEESSHH.HHHHHHHTT CS
                 xxxxxxx.xxxxxxxxx RF
   Hydrolase 195 mVGDgvn.DaaalaaAg 210
                  VGDg    + ++++Ag
  KIR64981.1 171 YVGDGGSqELTGARRAG 187
                 *****988888888876 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.4   6.1e+03      48      72 ..      19      43 ..      13      45 .. 0.73
   2 ?    0.3   0.0      0.16   7.2e+02      44      69 ..     107     132 ..     104     138 .. 0.76
   3 !   21.3   0.0   4.8e-08   0.00021       4      46 ..     149     191 ..     147     195 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.4
                    ESSSSS-TTTHHHHHHHHT---SEE CS
  Hydrolase_like 48 VltGvtrpedleepehkptyvaddl 72
                    V +G+ +++ +e+  +  ++ +d l
      KIR64981.1 19 VQRGAAHRSTAELLGCPVDALVDVL 43
                    7788888888777778777777765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.16
                     EEEEESSSSS-TTTHHHHHHHHT--- CS
  Hydrolase_like  44 ksvLVltGvtrpedleepehkptyva 69 
                     + + V+tG  ++  +e+pe+ p+  +
      KIR64981.1 107 RAAGVRTGLVSDCTHELPEFLPQLAV 132
                     67899999999988888888887744 PP

  == domain 3  score: 21.3 bits;  conditional E-value: 4.8e-08
                     TTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEE CS
  Hydrolase_like   4 KPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksv 46 
                     KP p +y +a   lg+ p+++l++GD   + + gA++aG++ v
      KIR64981.1 149 KPDPALYLSACGPLGLSPGDCLYVGDGGSQELTGARRAGMTAV 191
                     9***************************************987 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   7.2e-06     0.032       1     112 [.       7     121 ..       7     144 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.2e-06
         HAD   1 alfDfDgTLldg.dsle..lllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpk....lldpgale 92 
                 +lfDf gTL++  + +     +  ll+++     +al   l+ +++  ++ ++ +++a l +   ++   + +  l+++va+ +r       l+ +a+ 
  KIR64981.1   7 VLFDFFGTLTRCvQRGAahRSTAELLGCP----VDALVDVLDRSYYQRASGRFGDAVATLRWVCAQAGVHPPESALRAAVASRQRAVradtRLRDEAVP 101
                 799******88754444446666677776....45566666666667777777778888888766666666677777777333333333444778**** PP

         HAD  93 llaahraaGdrvvvvSgglr 112
                 +l a raaG+r+ +vS +  
  KIR64981.1 102 VLTALRAAGVRTGLVSDCTH 121
                 ****************9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1568.44
//
Query:       KIR64982.1  [L=344]
Description: hypothetical protein TK50_05440 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-21   76.0  34.2    8.7e-16   58.3  15.1    2.9  2  EamA        EamA-like transporter family
  ------ inclusion threshold ------
          1    8.6   7.4       0.59    9.4   1.9    2.5  3  GSK-3_bind  Glycogen synthase kinase-3 binding


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8  11.1   3.8e-08   0.00034       6     135 ..      18     166 ..      13     168 .. 0.80
   2 !   58.3  15.1   9.7e-20   8.7e-16       3     136 ..     180     313 ..     178     314 .. 0.98

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3.8e-08
        EamA   6 lallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegkl.....aklslkd......................wllllllgllgtvl 77 
                 lal++  +++++++++   ++  + l+++f+r l+a  +l ++al +++       +    ++                        +l +l+ ++ ++
  KIR64982.1  18 LALAVLAVSSSAPLVA---FAAAPALAIAFWRNLLAVGVLGPFALARRRAEfralaR----SGtgrdgpvgtgrdgrapavagrrEGWLCVLSGVALAA 109
                 3333333344444444...6789********************77777777643332....223444666666777777777777899999999***** PP

        EamA  78 afllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                  f  ++ +++ ts++ a+ +++++P++  +++    g +l    ++gi+++++G++l 
  KIR64982.1 110 HFATWMPSVQLTSVAAAVALVATQPAWQGLIARGQ-GRRLPPAVWVGIAVAVAGAVLA 166
                 ***********************************.*******************997 PP

  == domain 2  score: 58.3 bits;  conditional E-value: 9.7e-20
        EamA   3 gillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsle 101
                 g+lla+++ lf a+y+ l  ++  +vs+ t+t++ + +++++ll+++l+ + +l  ++   wl++l l + + +l++++f+yal+++sa+++s++++le
  KIR64982.1 180 GDLLAVAGGLFAAVYTALGERARVTVSTTTYTTICYGVCALILLVVCLVGGVPLGGYDTGTWLAILGLVAGAQLLGHSMFNYALRRVSATTVSMLILLE 278
                 89************************************************************************************************* PP

        EamA 102 PvftlilsvlllgekltlkqllgivlillGvllil 136
                    ++++++++lg+ + +  l g++lil+Gv +++
  KIR64982.1 279 APGAALIAWAWLGQLPRVGALPGLALILAGVTVVV 313
                 ********************************997 PP

>> GSK-3_bind  Glycogen synthase kinase-3 binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.9   6.6e-05      0.59      91     172 ..      21      99 ..      14     109 .. 0.89
   2 ?   -1.9   0.0      0.18   1.7e+03     130     155 ..     118     143 ..     100     149 .. 0.79
   3 ?    1.7   0.1     0.015   1.4e+02     105     129 ..     188     212 ..     162     232 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 6.6e-05
  GSK-3_bind  91 qlllraasaetvgpappgalrcalgdrgrvrgraaPycvaelaagpsalsplskqpgldgppgagkqgipqplsGPcrrGWl 172
                 ++l  ++sa  v+ a + al  a++      g   P+ +a+  a   al+   + +g dgp+g+g+ g +  ++G  r GWl
  KIR64982.1  21 AVLAVSSSAPLVAFAAAPALAIAFWRNLLAVGVLGPFALARRRAEFRALA--RSGTGRDGPVGTGRDGRAPAVAGR-REGWL 99 
                 677888999999999999*******999999******************7..7889************99999985.999*8 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.18
  GSK-3_bind 130 aelaagpsalsplskqpgldgppgag 155
                 ++l+++++a++ +++qp+ +g  + g
  KIR64982.1 118 VQLTSVAAAVALVATQPAWQGLIARG 143
                 57888999999999999998876554 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.015
  GSK-3_bind 105 appgalrcalgdrgrvrgraaPycv 129
                     a+  alg+r+rv   ++ y  
  KIR64982.1 188 GLFAAVYTALGERARVTVSTTTYTT 212
                 5567999*********999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2534.86
//
Query:       KIR64983.1  [L=354]
Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-07   30.7   0.0    3.6e-07   29.8   0.0    1.3  1  Meth_synt_2  Cobalamin-independent synthase, Catalytic domain


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0     2e-11   3.6e-07       5     303 ..       7     320 ..       3     330 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2e-11
                  --SB---SS-----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-SSTTHHHHTTSTTEE--SS--EEEETTEEE---EE-SS-- CS
  Meth_synt_2   5 tiGSfPqtaevrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRgdmveyfgealdgfaftkngwvqsygsrcvrppiivgdvs 102
                   iGS P  a + +   +  +g+++ e+ ++   ++ ++ ++r e+ g  v+ +ge  +     y  + l+ +a + + +  + g    + p + ++  
   KIR64983.1   7 PIGSIPRPASLLAGLDDHAAGRIGPEQLQDLCDAALRDTISRFEATGSSVITDGEQTKPSFATYPLQGLTMLAPDGAVIPFADGHTR-QLPRLTAGPF 103
                  59*****************************************************87777766666666666666665555666555.4566888888 PP

                  -SS-SSTHHHHHHTTS-SS-BEEEEE-HHH..HHHTSEE-TTS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-T........TSSTT--SSG..GG CS
  Meth_synt_2 103 rpaamtvkesalaqsltdkpvkglltGpvt..ilnwsfvrddvdraeaaaqialalrdevkdLeaaGikviQiDep........alreGlplkk..ad 188
                  r   ++ ++ + a +lt  +vk  +  p++  +l++       +r+e +a++     ++++   +aG++ +Q+D              G +l+   + 
   KIR64983.1 104 RYGVRSATYVTAARALTTSQVKQAVIAPSAlsLLYPTGGIAGYSREEFLADLMDEAEADIRGALDAGAASVQVDFTegrlslklD-PSGGVLRSfiEL 200
                  999999999999999999999**9999987335788777789******************9666789*******66556544321.234444444544 PP

                  HHHHHHHHH..HHHHHHHTTS-TTSEEEEEES-S--CCCHHHHHTT--SEEEESBSSS-..SSGGGGTTT.T---SEEEEBSS-TTSSS--THHHHHH CS
  Meth_synt_2 189 waayldwav..eafrldtiaaaddtqvhtHlCyselndilsaiaaldvDvitieasrsd..eellealee.vkygrgvglGvydihsprvpsmeeiaa 281
                  ++a ld     e +r+   +     q +tH+   ++ d+l+++ +l v    i+ + ++  e +le +++ ++  + + +Gv d   p v++ e++ +
   KIR64983.1 201 NNAVLDRFSeaERARIGVHTCPGGDQDSTHSADIDYADLLPSLLQLPVGTFYIQLASEPdpERVLEIVADhARPSQRIFVGVTDPINPIVETPEQVCD 298
                  5555655430044556666666677778999999999999**************9987522679999999889999********************** PP

                  HHHCHHCTS-STSB-BB-SS-S CS
  Meth_synt_2 282 likkaldvapkerlwvnPdCGL 303
                  ++  a++ + ++rl+   dCG+
   KIR64983.1 299 RVLLAARYLGTDRLGTCDDCGF 320
                  *********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2776.41
//
Query:       KIR64984.1  [L=63]
Description: hypothetical protein TK50_05450 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 410.76
//
Query:       KIR64985.1  [L=265]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-25   87.5   0.0    1.1e-23   83.7   0.0    2.0  1  adh_short        short chain dehydrogenase
    1.3e-15   57.7   0.0    3.3e-15   56.3   0.0    1.7  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    7.5e-06   26.0   0.1    1.1e-05   25.4   0.1    1.3  1  KR               KR domain
     0.0014   18.3   1.0      0.002   17.8   1.0    1.2  1  DAO              FAD dependent oxidoreductase
     0.0033   16.9   0.0     0.0042   16.6   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0099   15.9   0.9      0.016   15.2   0.3    1.6  2  Glyco_transf_4   Glycosyltransferase Family 4
  ------ inclusion threshold ------
      0.055   13.3   1.6       0.11   12.4   0.9    1.7  2  NAD_binding_10   NAD(P)H-binding
       0.13   12.0   0.0       0.22   11.1   0.0    1.3  1  ApbA             Ketopantoate reductase PanE/ApbA
       0.13   11.3   0.8       0.26   10.3   0.8    1.7  1  FAD_binding_2    FAD binding domain
       0.14   12.0   0.3       0.31   10.8   0.3    1.6  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 
       0.23   10.8   1.7       0.33   10.2   1.7    1.2  1  FAD_oxidored     FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   6.7e-27   1.1e-23       3     189 ..       1     192 [.       1     196 [. 0.87

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 6.7e-27
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 ++vtGassGIG+a a ela++G +vv+v+r +++l+++ + ++e+ g++   +++D +  ++v+ l e+ ++ ++++dvL nNAG    +p+  ++ + 
  KIR64985.1   1 MVVTGASSGIGLAAAVELARRGDRVVLVGRDPARLQAAGERVREAsGERPELFRADYAVLDDVRGLAERLRAAYDRIDVLANNAGAIVLRPA--TTVDG 97 
                 58*******************************************999**************************************766665..56667 PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEE.............GGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHH CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsS.............vagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdm 186
                 +e +++ N  ++fll+ +     l+ + Gr v ++S             +a++ ++ ++ aY++sK a + +t ++a+ + +  i   + +PG+v+T +
  KIR64985.1  98 FELSMQANHLAPFLLSTL-----LRDRVGRLVVTASgahrsgvldpddlNAALRGYRSMRAYGTSKQANILFTGEAARRWPE--IPAYCFHPGVVRTRF 189
                 *************99876.....4557899999999333333333333335778999**********************998..9************98 PP

                 HHH CS
   adh_short 187 ake 189
                  ++
  KIR64985.1 190 GAD 192
                 765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0     2e-18   3.3e-15       1     181 [.       5     192 ..       5     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 2e-18
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae..vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                   Ga sgIG a+A +la++G +vvl+ ++ ++ +++ e++ e+ g++  ++++D +  ++v+ l+e++++ ++++D+l nnag       p   t+ ++
    KIR64985.1   5 GASSGIGLAAAVELARRGDRVVLVGRDPARlQAAGERVREASGERpeLFRADYAVLDDVRGLAERLRAAYDRIDVLANNAGAIVL--RP--ATTVDG 97 
                   899***************************999999999999988666*********************************9999..66..7899** PP

                   HHHHHHHHTHHHHHHHHHHHH......HCTSC...CEEEEE.EEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGG CS
  adh_short_C2  95 fdraldvnlyslfllakaalp......lmkeg...gsivnl.ssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasg 181
                   f+  ++ n  + fll+  ++       + ++g   + ++      +a r+  +  ayg++K a + +t  +A+ + +  i   + +pg+++T+  ++
    KIR64985.1  98 FELSMQANHLAPFLLSTLLRDrvgrlvVTASGahrSGVLDPdDLNAALRGYRSMRAYGTSKQANILFTGEAARRWPE--IPAYCFHPGVVRTRFGAD 192
                   ****************998886666533333365433444435668899999999********************98..************998654 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1     7e-09   1.1e-05       4     138 ..       2     130 ..       1     145 [. 0.82

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 7e-09
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 ++tG+  g+Gl+ a  la++g r +vl++R++a  +++ ++++  ea+g + e+++aD +  d+v+ l e+++a  ++i    + Ag++  ++   +t 
  KIR64985.1   2 VVTGASSGIGLAAAVELARRGDR-VVLVGRDPARLQAAGERVR--EASGERPELFRADYAVLDDVRGLAERLRAAYDRIDVLANNAGAIVLRPA--TTV 95 
                 79*******************76.89*****666666666666..78899***********************************999987765..566 PP

                 HHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHH CS
          KR 103 edleqvlapKvkGawnLhelledesldffvlfSSia 138
                 + +e  +++   +   L +ll+d ++  +v+++S a
  KIR64985.1  96 DGFELSMQANHLAPFLLSTLLRD-RVGRLVVTASGA 130
                 77888888888888888888876.555556666655 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   1.0   1.2e-06     0.002      10     154 ..      10     147 ..       9     174 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHHHTT..EEEEESSSS....TT...SSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHHH CS
         DAO  10 iGlstAyeLarrg..Vtllekgdi....ag...sgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeeleal 99 
                 iGl++A eLarrg  V+l+ +++     ag   ++aSg    l+++ ++ l +   +  l++   +++++++   +id+   + G ++l + ++  +++
  KIR64985.1  10 IGLAAAVELARRGdrVVLVGRDPArlqaAGervREASGERPELFRADYAVLDD---VRGLAE---RLRAAYD---RIDVLANNAGAIVL-RPATTVDGF 98 
                 8***********99*******94456542244447777777777776654552...223333...3334444...34566778888888.456669999 PP

                 HHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHH CS
         DAO 100 dkllallleagldaelldaeevrelepalpgllgalfypdtgqvdpakltaalar 154
                 + ++++   + l   ll+  ++r++      ++ a + + +g++dp  l aal+ 
  KIR64985.1  99 ELSMQA---NHLAPFLLST-LLRDRVGR--LVVTASGAHRSGVLDPDDLNAALRG 147
                 777775...3343336666.58888863..2447778888899999999999875 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.6e-06    0.0042       1     163 [.       1     176 [.       1     201 [. 0.71

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.6e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHH....H.T-SEEEE--S..---HHHHHHSHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfke....e.qpdavihlAa..vggvaassedpa 85 
                 ++VtGa+  iG a + +l+++g +v+ + r++ + + a ++         el ++d+   ++++ l ++    + ++d+  + A+  v  +a++++  +
  KIR64985.1   1 MVVTGASSGIGLAAAVELARRGDRVVLVGRDPARLQAAGERVReasgerpELFRADYAVLDDVRGLAERlraaYdRIDVLANNAGaiVLRPATTVDGFE 99 
                 58********************999999999666555555544889****9999998888866666554111123788888775555555666666666 PP

                 HHHHHHTHHHHHHHHHHHHHTCTEEEEEEE.GGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH.T-E CS
   Epimerase  86 dfieknlqgtlnlleaarkagvkrllflsS.sevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy.gln 163
                   +++n      l   +r   v rl+   S ++  G  +  p++ ++    +++ ++Y+ +K+a    + ++a+   +++
  KIR64985.1 100 LSMQANHLAPFLLSTLLR-DRVGRLVVTASgAHRSGVLD--PDDLNAALRGYRSMRAYGTSKQANILFTGEAARRWpEIP 176
                 666677776666555555.55666666666155555555..57888877888***********99887776666655555 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.3   9.7e-06     0.016      12      81 ..      15      84 ..      12      94 .. 0.89
   2 ?   -3.0   0.0       3.9   6.4e+03      38      52 ..     231     245 ..     209     259 .. 0.48

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9.7e-06
  Glyco_transf_4 12 araLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkre..kpDvvHahsp 81
                    a +LarrG +V++v +++ + ++   e+v++  + ++ l++  +  l  +r l+++l++   ++Dv+ a+++
      KIR64985.1 15 AVELARRGDRVVLVGRDPARLQAAG-ERVREASGERPELFRADYAVLDDVRGLAERLRAAydRIDVL-ANNA 84
                    779***************9999999.999*****************************999999999.4444 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.9
  Glyco_transf_4  38 elvvrvprvplpllk 52 
                     ++  r pr+pl++  
      KIR64985.1 231 YYADRRPRRPLRKAT 245
                     333333333333333 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.9   6.5e-05      0.11       1      41 [.       5      42 ..       5      72 .. 0.78
   2 ?   -3.3   0.0       4.3   6.9e+03      48      61 ..     135     148 ..     132     150 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.5e-05
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTC CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeegl 41
                    GA+ ++G +++ el++rg  +v+++ R+p++l++    e++
      KIR64985.1  5 GASSGIGLAAAVELARRG-DRVVLVGRDPARLQAAG--ERV 42
                    9****************6.9************9532..333 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.3
                     TT-CCHHHHHHTT- CS
  NAD_binding_10  48 vtdvedlaealkga 61 
                     v+d++dl +al+g+
      KIR64985.1 135 VLDPDDLNAALRGY 148
                     7899******9996 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00014      0.22       8      49 ..       9      48 ..       2      60 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
                HHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETTCE CS
        ApbA  8 aiGsllaakLakagadvtlilrsrrlealkknGlrltsegge 49
                +iG   a++La+ g  v+l++r++  ++l+ +G r+++ +ge
  KIR64985.1  9 GIGLAAAVELARRGDRVVLVGRDP--ARLQAAGERVREASGE 48
                69**********************..5566777777776654 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.8   0.00016      0.26       8      35 ..       9      34 ..       2     169 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00016
                   SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2  8 GlAGLaAAleaaeaGlkvavvekeqefg 35
                   G+ GLaAA+e+a++G +v++v   ++ +
     KIR64985.1  9 GI-GLAAAVELARRGDRVVLVGRDPA-R 34
                   55.******************98887.3 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00019      0.31      44      63 ..       2      21 ..       1      28 [. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
                     EEESTSSHHHHHHHHHHHHS CS
  Eno-Rase_NADH_b 44 LviGaStGYGLAsriaaafg 63
                      v GaS+G GLA+ + +a+ 
       KIR64985.1  2 VVTGASSGIGLAAAVELARR 21
                     589************99875 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.7    0.0002      0.33       3      32 ..       2      32 ..       1      33 [. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0002
  FAD_oxidored  3 vVvGGgpa.GvaAAiaAaraGakvlLveerg 32
                  vV G+ ++ G+aAA+  ar+G +v+Lv +++
    KIR64985.1  2 VVTGASSGiGLAAAVELARRGDRVVLVGRDP 32
                  7888888889*****************8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 1795.44
//
Query:       KIR64986.1  [L=318]
Description: citrate (pro-3S)-lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-44  151.9   0.0    1.8e-44  151.5   0.0    1.1  1  HpcH_HpaI        HpcH/HpaI aldolase/citrate lyase family
      2e-08   33.8   0.0    0.00087   18.5   0.0    2.1  2  C-C_Bond_Lyase   C-C_Bond_Lyase of the TIM-Barrel fold
     0.0003   19.2   0.0       0.12   10.6   0.0    2.5  3  Malate_synthase  Malate synthase


Domain annotation for each model (and alignments):
>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.5   0.0   3.1e-48   1.8e-44       1     221 []       9     239 ..       9     239 .. 0.94

  Alignments for each domain:
  == domain 1  score: 151.5 bits;  conditional E-value: 3.1e-48
                 EEEEEEESTSHHHHHHHCTC--SEEEEESSTSSSHHHHHHHHHHHHHHHHHHHHCTTTSSEEEEE-SSTTHHHHHHHGG.HHH...TTSSEEEESS--S CS
   HpcH_HpaI   1 riglflpganaalaekaaiagaDsvliDlEdavalaeKdaARvlvsealkqldalaaaasevvVRvnsldselikqdle.vld...lgaqvvlvPkvet 95 
                 r+ l +pg++ +++ ka +  aD v +DlEdava  +K +AR+++ +al++ d + +   + vVRvn l++++  +d++ v++   + ++ v++Pkv+ 
  KIR64986.1   9 RSCLAVPGSSVKMLGKAQGLPADQVFLDLEDAVAPLAKPDARKNIVAALNEGDWAGK---TRVVRVNDLTTPWTYRDVIdVVEgagAHLDCVMLPKVQD 104
                 67889*************************************************554...59****************995542225689********* PP

                 HHHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHH.TSTTEEEEEE-HHHHHHHTT-TTSTTSHHHH........HHHHHHHHTTHCEEE CS
   HpcH_HpaI  96 aeealevvsalrepekgirganketrllaqiEsaegvknaeeIa.avegldgvflGaeDlsadlgtkrspegtevl........dareriltaaraagi 185
                 a++++ ++  l + ek  +  ++++ + aqiE a+g+ n+++Ia a++++  +++G++D++a++ +++   g  +         ++  ril aar  ++
  KIR64986.1 105 AAQVQWLDLTLTQLEKTLGLPVGRIGIEAQIENAAGLVNIDAIAaASPRVETIIFGPADFMASINMRSLVVGGLMPdypgdpyhYILMRILMAARMHDL 203
                 ****************************************************************99998887777688999999*************** PP

                 EEEE.E-SSHHHHHHHHHTTHCEEEEEEHHHHHHHH CS
   HpcH_HpaI 186 aaldtvasdiddaegflaegalfvalGfdgkllinp 221
                 +a+d+ +++i+d+++f++ ++   alGfdgk++++p
  KIR64986.1 204 QAIDGPFLQIRDTDAFREVAKRSAALGFDGKWVLHP 239
                 **********************************98 PP

>> C-C_Bond_Lyase  C-C_Bond_Lyase of the TIM-Barrel fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.8e-06     0.035      34     137 ..      32     126 ..      14     174 .. 0.71
   2 !   18.5   0.0   1.4e-07   0.00087     249     299 ..     215     265 ..     192     287 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.8e-06
  C-C_Bond_Lyase  34 slvlclEDavseeeveaAeenlkellkelaeaekekekeelpllFvRvR...speqlkellerlgealelltGfvlPkftsesleeylealkkan 125
                      + l+lEDav+    ++A +n++++l+e + a k           vRv    +p + +++++ ++ a ++l+ ++lPk++ +   ++l++  +  
      KIR64986.1  32 QVFLDLEDAVAPLAKPDARKNIVAALNEGDWAGK--------TRVVRVNdltTPWTYRDVIDVVEGAGAHLDCVMLPKVQDAAQVQWLDLTLTQL 118
                     5789**********************99877433........3455665111577899******99*********************99755433 PP

  C-C_Bond_Lyase 126 eklgkklllmPi 137
                         +k l++P+
      KIR64986.1 119 ----EKTLGLPV 126
                     ....24566666 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 1.4e-07
  C-C_Bond_Lyase 249 dldglirEvalDkanGlvGKtvIhPsqialvqallvVskeeyedAldiles 299
                     d+d + +  +   a G+ GK v+hP qi + +++++  + +y++A+ il++
      KIR64986.1 215 DTDAFREVAKRSAALGFDGKWVLHPGQIDAANEVYSPAQADYDHAELILDA 265
                     556655555667899*********************************987 PP

>> Malate_synthase  Malate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.12   6.9e+02     104     116 ..      32      53 ..      20      75 .. 0.68
   2 !    5.7   0.0   0.00063       3.8     207     277 ..      97     166 ..      88     181 .. 0.86
   3 !   10.6   0.0     2e-05      0.12     351     380 ..     224     253 ..     209     270 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.12
                      EEEEESSTTS--.........H CS
  Malate_synthase 104 ttiaDfEDsvap.........n 116
                         +D ED+vap          
       KIR64986.1  32 QVFLDLEDAVAPlakpdarknI 53 
                      5678999999997777655542 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.00063
                      EEE-S-SSHHHHHHHHHHHHHHHHHCTSSTTSCEEEEEE-SHHHHTTHHHHHHCTTTTEEEEEE-CHHHHH CS
  Malate_synthase 207 ivlPKmegpqEaalwnevFsraedllglprgtikatvliEtlraslnldeiiyelrdrvaglNcGrlDyif 277
                      ++lPK++  + +++     +  e++lglp g i +   iE+    +n+d+i +++  rv  +  G  D++ 
       KIR64986.1  97 VMLPKVQDAAQVQWLDLTLTQLEKTLGLPVGRIGIEAQIENAAGLVNIDAI-AAASPRVETIIFGPADFMA 166
                      579*************9*******************************986.5666677766666666665 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 2e-05
                      HHHHHCT-SEEEESSHHHHHHHHHHHHHCH CS
  Malate_synthase 351 lrevraGadgaWvahPtlatlaaevfeevd 380
                       r +  G+dg Wv hP+ ++ a+ev++  +
       KIR64986.1 224 KRSAALGFDGKWVLHPGQIDAANEVYSPAQ 253
                      577889********************8655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2401.59
//
Query:       KIR64987.1  [L=172]
Description: hypothetical protein TK50_05465 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-19   69.8  11.8    1.2e-19   69.8  11.8    1.5  1  DUF4190          Domain of unknown function (DUF4190)


Domain annotation for each model (and alignments):
>> DUF4190  Domain of unknown function (DUF4190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8  11.8   6.6e-24   1.2e-19       1      62 []      88     148 ..      88     149 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 6.6e-24
     DUF4190   1 lAiasLvlgilgllfliitgivavilGhvAlrqirrsgerGkglAiaGivlGwigllllvll 62 
                 +Aia+Lvl+++g+ + +it++++ ilGhvA++qir++ge+G+g+A a+i++Gwi ++llvl+
  KIR64987.1  88 MAIAALVLALVGIGS-CITAPIGAILGHVARKQIRETGEGGEGMAKAAIIVGWILTGLLVLA 148
                 8***********988.5*****************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1348.04
//
Query:       KIR64988.1  [L=301]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-55  188.1   3.8    2.1e-55  187.8   3.8    1.1  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    8.8e-45  152.6   1.2    1.1e-44  152.2   1.2    1.1  1  adh_short      short chain dehydrogenase
  ------ inclusion threshold ------
      0.063   13.3   0.3       0.13   12.3   0.3    1.5  1  ADH_zinc_N     Zinc-binding dehydrogenase
       0.11   11.8   0.0       0.19   11.1   0.0    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
       0.26   11.7   1.0       0.71   10.3   0.2    2.1  2  NAD_binding_7  Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.8   3.8     6e-59   2.1e-55       3     232 ..      64     292 ..      62     294 .. 0.92

  Alignments for each domain:
  == domain 1  score: 187.8 bits;  conditional E-value: 6e-59
                   T..TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG....CSS-GGGH-HH CS
  adh_short_C2   3 a..sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapk....lkgpfletsre 93 
                       gIG+a+A++la+ Ga+v+++   ++     +e a elg + + +D tde++v al+++v+e++g + +lvnnag a +    +  p++++s +
    KIR64988.1  64 GspDGIGYATARRLADLGARVAIVSTTRRI----HERAGELGVTGFVADLTDESEVGALADAVAEQLGDVEVLVNNAGLASRaspeVLRPVAQLSYD 156
                   4558********************999886....88889999999************************************9999999********* PP

                   HHHHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSB.STTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHH CS
  adh_short_C2  94 efdraldvnlyslfllakaalp.lmkeg.gsivnlssvgaerv.vpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfde 187
                   e++  +d nl+ +fl+++a++  ++++g g+ivnl+ +++ +  +p  +ay+aaKa++++ltr+lA+e+ ++g++vN+v+pg i+T a++ +    e
    KIR64988.1 157 EWRGEIDRNLTTAFLCSRAFIGgMAERGwGRIVNLAATAGPVNaLPTEAAYAAAKAGVVGLTRALAMEMIADGVTVNSVAPGTIHTAASTVA----E 249
                   **********************6666669******99977654499***************************************9886655....4 PP

                   HHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 188 lleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                   +++ l   +p+gr gtp+eva+a++fL+s++asyitGq lvvDgG
    KIR64988.1 250 IRQGL--GTPVGRPGTPDEVAAAIAFLCSPAASYITGQMLVVDGG 292
                   66655..69************************************ PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   1.2   3.2e-48   1.1e-44       2     187 ..      57     245 ..      56     252 .. 0.95

  Alignments for each domain:
  == domain 1  score: 152.2 bits;  conditional E-value: 3.2e-48
                 EEEEESTTS..HHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S......S--SS CS
   adh_short   2 vvlvtGass..GIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi......tgsgp 92 
                 v+lvtGa+s  GIG+a+a++la  Ga+v++v+ + ++++e a el+     ++ + +D+td++ev al ++++++lg ++vLvnNAG+      +  +p
  KIR64988.1  57 VALVTGAGSpdGIGYATARRLADLGARVAIVSTT-RRIHERAGELG-----VTGFVADLTDESEVGALADAVAEQLGDVEVLVNNAGLasraspEVLRP 149
                 89*****9555*******************8887.77989999999.....89**************************************999999** PP

                 GGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG.TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short  93 fselseeewervievNltgvflltravlpamlkqssGrIvnvsSvag.kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 +++ls +ew+  i+ Nlt +fl++ra++  m ++ +GrIvn + +ag  ++++  aaY+A+Ka+v+gltr+la+e+  +g++vn+vaPG + T+  
  KIR64988.1 150 VAQLSYDEWRGEIDRNLTTAFLCSRAFIGGMAERGWGRIVNLAATAGpVNALPTEAAYAAAKAGVVGLTRALAMEMIADGVTVNSVAPGTIHTAAS 245
                 ***********************************************9999*****************************************9876 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   3.5e-05      0.13       1      81 [.      68     149 ..      68     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.5e-05
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEET....TTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadeviny....kea.dlverikeltggegvdvvfecvGsgatleaalkllkp 81 
                 g+G a+   ++ lGa+v  v+ +++  e a +lG++ ++      +e   l ++++e  g  +v v ++ +G   + +a+ ++l+p
  KIR64988.1  68 GIGYATARRLADLGARVAIVSTTRRIHERAGELGVTGFVADltdeSEVgALADAVAEQLG--DVEVLVNNAG--LASRASPEVLRP 149
                 89999999999**************99************998887777779999999994..8999999999..677777777776 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.2e-05      0.19      32      80 ..      51     102 ..      42     123 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.2e-05
                   S-GTTSEEEEES-SH...HHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTC CS
  2-Hacid_dh_C  32 kelsgktvGiiGlGr...IGqavakrlkafgmkviaydrskkkeeeeeelgv 80 
                    +l g+   + G+G+   IG a+a+rl+ +g++v +++++++  e++ elgv
    KIR64988.1  51 MRLDGRVALVTGAGSpdgIGYATARRLADLGARVAIVSTTRRIHERAGELGV 102
                   578899999999996666**********************997775655555 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2    0.0002      0.71       2      45 ..      50      95 ..      49     147 .. 0.76
   2 ?   -1.2   0.0      0.75   2.7e+03      16      40 ..     213     239 ..     210     273 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0002
  NAD_binding_7  2 fldlkgkkvlvvGgGe...vAarkvrklleagakvtvvapevkeele 45
                   +++l+g+  lv G+G+   +++  +r+l++ ga+v +v+ +  +++e
     KIR64988.1 50 TMRLDGRVALVTGAGSpdgIGYATARRLADLGARVAIVSTT-RRIHE 95
                   67899**********66669*******************99.44444 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.75
  NAD_binding_7  16 GevAarkvrklleagakvtv..vapev 40 
                    G v+++++  +      vtv  vap +
     KIR64988.1 213 GVVGLTRALAMEMIADGVTVnsVAPGT 239
                    889999988766555555554477664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1981.56
//
Query:       KIR64989.1  [L=135]
Description: hypothetical protein TK50_05475 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-17   61.2   1.3    5.8e-17   61.2   1.3    2.0  2  DUF4190        Domain of unknown function (DUF4190)
     0.0088   15.9   0.0      0.012   15.5   0.0    1.0  1  FA_desaturase  Fatty acid desaturase
  ------ inclusion threshold ------
       0.23   11.4   0.1       0.23   11.4   0.1    2.7  3  COX8           Cytochrome oxidase c subunit VIII
        2.1    8.3   4.4        2.2    8.2   4.4    1.1  1  DUF2076        Uncharacterized protein conserved in bacteria 


Domain annotation for each model (and alignments):
>> DUF4190  Domain of unknown function (DUF4190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   1.3   1.3e-20   5.8e-17       7      61 ..      60     114 ..      59     115 .. 0.93
   2 ?    0.5   1.2      0.11   5.1e+02      51      59 ..     117     125 ..     112     127 .. 0.86

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 1.3e-20
     DUF4190   7 vlgilgllfliitgivavilGhvAlrqirrsgerGkglAiaGivlGwigllllvl 61 
                 vl++l+l+f +++++++++lGhvA+rqirr+ge+G+ lA+ G++l+++ +++ ++
  KIR64989.1  60 VLAVLSLVFAFVFAPAGIVLGHVAKRQIRRTGEDGDQLATWGLILSYVFTVIGLI 114
                 788999888679**************************************99876 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.11
     DUF4190  51 lGwigllll 59 
                 +Gwigl+++
  KIR64989.1 117 CGWIGLAFW 125
                 79****999 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.6e-06     0.012      77     166 ..      41     126 ..      35     131 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.6e-06
  FA_desaturase  77 eDpdlaplalsrfeglfryllrlllgllvlg.....wllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwl 166
                    + p  +++++ +++g+  ++l+ l++++++       +l++v   ++r+++r++++  + + +w l++ +++ +++l++  ++++l+     +w+
     KIR64989.1  41 GPPGQGQYGPPPGQGRGTNVLAVLSLVFAFVfapagIVLGHV---AKRQIRRTGEDGDQLA-TWGLILSYVFTVIGLIACCGWIGLA-----FWG 126
                    445555566699999999988888888888833333333333...4444444444443333.3777777777775555555555555.....554 PP

>> COX8  Cytochrome oxidase c subunit VIII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.46     2e+03       3       9 ..       2       8 ..       1       8 [. 0.85
   2 ?   11.4   0.1   5.1e-05      0.23      16      37 ..      61      82 ..      51      84 .. 0.89
   3 ?   -0.6   0.4      0.28   1.3e+03      13      23 ..     107     117 ..     102     120 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.46
               E---SS- CS
        COX8 3 skPPrep 9
               s PPrep
  KIR64989.1 2 SYPPREP 8
               78***97 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5.1e-05
                HHHHHHHHHHHHHHHHHHHHTH CS
        COX8 16 aiglsvffvtfLlPaGWvLsHL 37
                + +ls  f+ +++PaG vL H+
  KIR64989.1 61 LAVLSLVFAFVFAPAGIVLGHV 82
                67899****************7 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.28
                 HHHHHHHHHHH CS
        COX8  13 aeqaiglsvff 23 
                 + ++igl +++
  KIR64989.1 107 VFTVIGLIACC 117
                 44556666554 PP

>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.4    0.0005       2.2     103     156 ..       8      61 ..       2      96 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0005
     DUF2076 103 pqpspqarpaapagqalgqeeqyaaqp.gyaqqqaqpqygqpaaapqpggGggFL 156
                 p ++p++ +  p +  ++ + qy ++p gy+q +++p++gq++++p +g+G+  L
  KIR64989.1   8 PDEPPSPYEPPPGQYEPPPPGQYGGPPpGYGQ-YGPPGQGQYGPPPGQGRGTNVL 61 
                 33444444444444444444455444438888.8999999998888766665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1008.08
//
Query:       KIR64990.1  [L=398]
Description: acyl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-46  157.4   4.8    4.6e-46  156.7   4.8    1.3  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    5.4e-32  110.8   0.6    1.3e-31  109.6   0.1    1.9  2  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    2.5e-19   69.3   0.1    5.3e-19   68.2   0.1    1.6  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    3.8e-19   69.3   3.1    6.1e-19   68.6   3.1    1.3  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.7   4.8     1e-49   4.6e-46       1     149 [.     244     392 ..     244     393 .. 0.99

  Alignments for each domain:
  == domain 1  score: 156.7 bits;  conditional E-value: 1e-49
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpdraeasmaKlfas 96 
                    g+Gf+++m +++++R++vaa+a g+  ra+e a++ya++r++fg+pl++hq++++klaem +++eaa +l  +aa++ dag+ + +ea maKl+as
     KIR64990.1 244 GRGFYQMMDGIEVGRVNVAARACGISIRAFELAVAYAQQRRTFGQPLAKHQAIAFKLAEMGTKIEAAHALMVNAARLKDAGQRNDVEAGMAKLLAS 339
                    79********************************************************************************************** PP

                    HHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHHH CS
  Acyl-CoA_dh_1  97 elaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarrl 149
                    e + ev+++a  ++Gg+Gy++ey++erl+r+a  l igeGtseiq+ ii+r+l
     KIR64990.1 340 EYCAEVVQEAFRIHGGYGYSKEYEIERLMREAPFLLIGEGTSEIQKTIISRGL 392
                    **************************************************987 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.1   2.8e-35   1.3e-31       1     113 []      11     122 ..      11     122 .. 0.96
   2 ?   -1.8   0.1       1.1   4.9e+03      67     107 ..     252     288 ..     223     306 .. 0.51

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 2.8e-35
                    THHHHHHHHHHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHH CS
  Acyl-CoA_dh_N   1 teeqealrdtvrefaeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailrf 96 
                    t+ q+ + +tvrefa++e+ pha++ ++++e+p ++++ + e+Gl+g+tv eeygG+g + l++a+v+eel+r++++++ ++++h  +va+ i ++
     KIR64990.1  11 TDVQRSILETVREFADREIIPHAQRLEHADEYPTDILDGMREMGLFGLTVAEEYGGLGESLLTYALVVEELSRGWMSISGIVNTHF-IVAYLISQH 105
                    67799**********************999***********************************************999999886.8889***** PP

                    S-HHHHHHHHHHHHTTS CS
  Acyl-CoA_dh_N  97 GteeqkrryLpklasge 113
                    G++eq++r Lpk+a+ge
     KIR64990.1 106 GSAEQRARLLPKMATGE 122
                    ****************8 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
                    HHHHHHHH-HHHHHHHHHHHHTTH.HHHHHHS-HHHHHHHHH CS
  Acyl-CoA_dh_N  67 vaeelaradaglalllgvhsslva.pailrfGteeqkrryLp 107
                       e++r++++ ++   ++ s+ a +  l+ + ++q+r + +
     KIR64990.1 252 DGIEVGRVNVAARA---CGISIRAfE--LAVAYAQQRRTFGQ 288
                    44455555555332...222222211..33344444444444 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.1   1.2e-22   5.3e-19       1      97 []     126     229 ..     126     229 .. 0.84

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 1.2e-22
                    EEE---SS-SS-GGG---EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEE..TS---.----EEEEEEE........GGGEEE.-----BSS-TT CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvkttaaerdggeyvlnGeKiwitnaaiatlalvlar..tekpd.rarglslflvp......rdapgvsv.rrieeklGlrg 86 
                    af ++Ep+ Gsdv +++++a  rdg+ yvlnG+K+w tn+a+++++ +l++  t ++d  ++++s+fl++      + apg+++ +ri +k+G++g
     KIR64990.1 126 AFSMSEPECGSDVSAIRSKA-VRDGDTYVLNGQKMWLTNGAYSSVVATLVKtdT-GADsVYGNMSTFLLEkepgfgETAPGLTIpGRI-DKMGYKG 218
                    799***************76.445556************************743.33369**********5555544555****8888.7****** PP

                    S-EEEEEEE.. CS
  Acyl-CoA_dh_M  87 lptgelvfedv 97 
                    ++t+e+v++ v
     KIR64990.1 219 VETTEMVLDGV 229
                    *******9976 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   3.1   1.4e-22   6.1e-19       3     123 ..     261     371 ..     259     376 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 1.4e-22
                    HHHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   3 iaavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaav 98 
                    +aa a G+  +a++ +v++a++r +  +g++la ++a+ ++lae+ ++++AA al+ +aa+      +ag+++      ea +a++la+e ++++v
     KIR64990.1 261 VAARACGISIRAFELAVAYAQQRRT--FGQPLAKHQAIAFKLAEMGTKIEAAHALMVNAARL----KDAGQRN----DVEAGMAKLLASEYCAEVV 346
                    79999********************..*******************************9999....9999998....78999************** PP

                    HHHHHHCGGGGGBTT-HHHHHHHHH CS
  Acyl-CoA_dh_2  99 dalfeaaGgsalrkesplqRlwRDa 123
                    +++f+++Gg+++ ke++++Rl+R+a
     KIR64990.1 347 QEAFRIHGGYGYSKEYEIERLMREA 371
                    ***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2781.03
//
Query:       KIR64991.1  [L=135]
Description: succinate--CoA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-40  136.6   0.8    5.9e-40  136.4   0.8    1.0  1  CoA_binding_2  CoA binding domain
     0.0041   17.8   0.0     0.0059   17.3   0.0    1.2  1  CoA_binding    CoA binding domain
  ------ inclusion threshold ------
      0.034   14.5   0.0      0.067   13.6   0.0    1.4  1  E3_binding     e3 binding domain


Domain annotation for each model (and alignments):
>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.4   0.8   9.8e-44   5.9e-40       3     114 ..      14     125 ..      12     127 .. 0.98

  Alignments for each domain:
  == domain 1  score: 136.4 bits;  conditional E-value: 9.8e-44
                    EEEET--S-TTSHHHHHHHHHHHHT--EEEESSS-SEETTEES----T....T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT---HHHHHHH CS
  CoA_binding_2   3 iaVvGasdnpgkfgykvlryllehglpvvpVnpkeeeilgekvyaslaedpepvdlvdvftppeatpeivkealalgakavwlqpgsedeeaaela 98 
                    iaVvGas +pgk++++v++++++ g++++pVnp+ +e++ge++yasla+ p+pvdlvdvf+p+ +++ +v+ea+a+ga+avwlq+g++++ea ++a
     KIR64991.1  14 IAVVGASRDPGKAAHRVPAQMQRYGWRIIPVNPTVDELFGERAYASLADIPHPVDLVDVFRPARDAVGVVREAVAIGAPAVWLQLGIVSPEARRIA 109
                    9***********************************************868********************************************* PP

                    HHTT-EEE.ES-HHHH CS
  CoA_binding_2  99 eeagirvvgdrCilve 114
                    eeag+++v+drC+ +e
     KIR64991.1 110 EEAGVDYVEDRCLIIE 125
                    *************998 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   9.9e-07    0.0059       6      91 ..      14      95 ..      10      98 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 9.9e-07
                 EEEETTTSHHHHHH.HHHHHHHHECEEEEEEC-TTTTTCEETTEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-SEEE CS
  CoA_binding  6 viviGagglgiagl.yhfkeklkygikavfgvnprkvgtevlglpvyksvdeleektevdvavitvPaesaqeavdelveagikgiv 91
                 ++v+Ga++  ++ +  + +++ +yg + +++vnp+   +e  g  +y s+++++    vd   ++ Pa+ a  +v e+v+ g + ++
   KIR64991.1 14 IAVVGASRDPGKAAhRVPAQMQRYGWR-IIPVNPT--VDELFGERAYASLADIPHP--VDLVDVFRPARDAVGVVREAVAIGAPAVW 95
                 89************7788888887775.78*****..9*****************9..999999***************99988877 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.1e-05     0.067       3      17 ..     101     115 ..     100     117 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
                 E-HHHHHHHHHCT-- CS
  E3_binding   3 AsPaaRklAkelGid 17 
                  sP aR++A+e G+d
  KIR64991.1 101 VSPEARRIAEEAGVD 115
                 69************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1187.15
//
Query:       KIR64992.1  [L=126]
Description: thiol-disulfide oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-16   59.2   0.1    1.1e-15   59.0   0.1    1.0  1  DUF393    Protein of unknown function, DUF393
  ------ inclusion threshold ------
      0.082   12.4   1.3       0.12   11.8   1.3    1.3  1  zf-FLZ    zinc-finger of the FCS-type, C2-C2


Domain annotation for each model (and alignments):
>> DUF393  Protein of unknown function, DUF393
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.1   1.2e-19   1.1e-15       2     112 ..       7     113 ..       6     114 .. 0.91

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 1.2e-19
      DUF393   2 lyDgeCplCnravqflerrdrkgrirfadlqsasgkallkelgidaeqldslllv.ieagrvysgsdAaleiaralpglwrllalllvlprlkklrdal 99 
                 +yDg+C +C++ ++f+err    r r  ++q a+  a    lg++++++ + + +   +g++  g dA+++++   + lwr++++ l++p ++ ++  +
  KIR64992.1   7 VYDGDCAFCTKCAEFIERRIP-TRARVLPWQFADLDA----LGLTEAECTEAVQWvGADGSRAAGPDAIARLLGDSGPLWRVAGAGLRFPPARAAAWPA 100
                 8******************65.689999996666655....58*********999788888***********999999********************* PP

      DUF393 100 YrliarnRyrlfg 112
                 Yr++arnR+rl g
  KIR64992.1 101 YRWVARNRHRLPG 113
                 **********986 PP

>> zf-FLZ  zinc-finger of the FCS-type, C2-C2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.3   1.4e-05      0.12      27      41 ..       3      17 ..       1      20 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.4e-05
      zf-FLZ 27 kDiymYrGdkaFCSe 41
                + +++Y Gd aFC++
  KIR64992.1  3 RSTFVYDGDCAFCTK 17
                789**********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 926.55
//
Query:       KIR64993.1  [L=437]
Description: hypothetical protein TK50_05510 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.5e-21   73.6   0.0    2.6e-18   65.6   0.0    2.2  2  HSP70        Hsp70 protein
  ------ inclusion threshold ------
       0.01   14.7   0.1      0.063   12.1   0.0    2.0  2  MreB_Mbl     MreB/Mbl protein
      0.021   14.6   1.8      0.043   13.5   1.6    1.5  1  FGGY_C       FGGY family of carbohydrate kinases, C-terminal 
      0.042   13.4   2.1        5.3    6.5   0.3    2.4  2  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
       0.15   12.5   0.1       0.81   10.1   0.0    2.1  2  FtsA         Cell division protein FtsA


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.1   0.00093       3.3       1      47 [.       4      56 ..       4      62 .. 0.75
   2 !   65.6   0.0   7.1e-22   2.6e-18     101     372 ..      80     348 ..      70     359 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00093
                EEEEEEXSSEEEEEEEETTEE.....EEEXXTTSXSSEESEEEEXTT.SEEET CS
       HSP70  1 viGiDLGttnsvvavmeggki.....evianeegnrttPsvvaFtkk.erlvG 47
                v+GiD+G+t++  +v++ ++i     e +a + g+ t Ps +  + +    vG
  KIR64993.1  4 VLGIDIGNTTTTASVVRRRGIdwthaEAVALDAGATTVPSALCLSAHgGLTVG 56
                79**************9987622222678888999999998776665455555 PP

  == domain 2  score: 65.6 bits;  conditional E-value: 7.1e-22
                 EEETTEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS.SCEEEEEEEEXSSXE CS
       HSP70 101 veaagekftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd.kernvlvyDlGggtf 198
                 v   ge + ++ ++am+   + e++ a  g + + +v++ Pa +    R+  + A     ++v  +   p  +++a G   +       +vy lGg tf
  KIR64993.1  80 VVLGGEAYPAQTLTAMLAGWVVEQVRATEGGPAEAVVVSHPAGWGPHRRELLRRAL--WEFEVPGVTLLPCPVTVAEGHAARGfAGDLAAVYALGGETF 176
                 55568889999999999999999999999999999999999999998888888874..45677777777888888888887776677889********* PP

                 EEEEEEEE.TTEEEEEEEEEE.TTXSHHHHHHHHHHHHHHHHHHH.HSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEE CS
       HSP70 199 dvSilele.kGvfevkaTagD.thlGGedfDealvehlveefkkk.egidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlsekls 294
                 +  +++ + +G++  ++        GG +f ++l++h+++ + ++ + +d +  + a ++l +a+e+a  eLS + q+++ l++ t  +     ++ +s
  KIR64993.1 177 EGALVRRNdDGTYAPLGLPLGlPGCGGAEFVAELTDHVRAVLARElSALDGQWADAAARELPSACERAAHELSVAPQADVVLDLPTGPA-----RVPVS 270
                 ***9987648***999877551679***************998875789***********************************99888.....899** PP

                 HHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHH CS
       HSP70 295 RakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqa 372
                 Ra+fee++++ ++ t++ + +a++ a+l+   +d v+l GG+tR+P v el+  ++  + + + +p  + a GAA+ a
  KIR64993.1 271 RAEFEEMIRPAVRGTVDLLLRAVHSAGLEPARLDGVLLAGGATRVPLVAELLGAALPGPVQVAPDPQLVAAAGAALAA 348
                 ***********************************************************999999999*******987 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.076   2.7e+02       4      36 ..       5      38 ..       3      50 .. 0.70
   2 ?   12.1   0.0   1.8e-05     0.063     232     321 ..     264     350 ..     202     355 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.076
                EEEEE-SSEEEE.EETTTEEEEEEES-EEEETTT CS
    MreB_Mbl  4 lgiDLGtantlv.yvkgkgivlnepsvvAikkkt 36
                lgiD+G ++t +  v+ +gi  +++  vA++  +
  KIR64993.1  5 LGIDIGNTTTTAsVVRRRGIDWTHAEAVALDAGA 38
                6788885555443677888888888888877664 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.8e-05
                 EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC- CS
    MreB_Mbl 232 pkevevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglpvkvaedpltcvakGtgkvlek 321
                 p +v vs +e +e+++ +v+  v+ + ++ +++  e a      g++l+GG++ +  + +ll  ++  pv+va dp  ++a G++ ++ +
  KIR64993.1 264 PARVPVSRAEFEEMIRPAVRGTVDLLLRAVHSAGLEPA---RLDGVLLAGGATRVPLVAELLGAALPGPVQVAPDPQLVAAAGAALAARQ 350
                 45677888888888888888888887777766655544...457***************************************9987766 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.6   1.2e-05     0.043     146     194 ..     299     348 ..     281     350 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
      FGGY_C 146 sgkpldrlavdGGgskndllmqllAdilgvpVerpkt.aeatalGaAilA 194
                 +++ ld +++ GG+++ +l+++ll+ +l  pV+++++ +  +a GaA++A
  KIR64993.1 299 EPARLDGVLLAGGATRVPLVAELLGAALPGPVQVAPDpQLVAAAGAALAA 348
                 5778999*****************************97888999***998 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.3    0.0015       5.3       1      19 [.       5      23 ..       5      33 .. 0.89
   2 ?    5.9   0.0    0.0022       7.7     216     267 .]     302     348 ..     266     348 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0015
                 EEEEE-SSEEEEEEEETTT CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekg 19
                 +GiD+G Ttt a +++++g
   KIR64993.1  5 LGIDIGNTTTTASVVRRRG 23
                 8***********9999876 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0022
                  -SS.EEEESGGGG-HHHHHHH.....HHHH-S-EE--GGGGGHHHHHHHHHH CS
  BcrAD_BadFG 216 vtdevtltGGvakneaavkelrklvkenygevkininpdsiytgalGAalfA 267
                  + d v+l GG  +  ++v el   +  +  + ++++ pd++  +a GAal A
   KIR64993.1 302 RLDGVLLAGGATRV-PLVAEL---LGAALPG-PVQVAPDPQLVAAAGAALAA 348
                  33459999998888.888777...7777777.8****************987 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00023      0.81       2      24 ..       6      28 ..       5      49 .. 0.84
   2 ?   -0.5   0.0      0.46   1.7e+03      70     103 .]     270     343 ..     167     343 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00023
                EEEE-SSSEEEEEEETTEEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  2 lvDiGagktdvavaedgalvhlr 24
                ++DiG+++t+++v+++ ++ +++
  KIR64993.1  6 GIDIGNTTTTASVVRRRGIDWTH 28
                79*************99887754 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.46
                 H........................................GGGGSTTHHHHHHHHHT-..HH.HT-GGGHHHHH CS
                 x........................................xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
        FtsA  70 s........................................ggsalpnleelaeralspklee.vsdpeyasalg 103
                 s                                        g++ +p ++el+  al p  ++ + dp++++a+g
  KIR64993.1 270 SraefeemirpavrgtvdlllravhsagleparldgvllagGATRVPLVAELLGAAL-PGPVQvAPDPQLVAAAG 343
                 033344555555556666666666666666777777777777888888888888887.55566677888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3223.64
//
Query:       KIR64994.1  [L=636]
Description: GTP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-09   36.9   0.0    1.6e-08   34.8   0.0    2.1  1  Dynamin_N       Dynamin family
    0.00023   21.2   0.0    0.00083   19.4   0.0    2.0  1  MMR_HSR1        50S ribosome-binding GTPase
      0.007   15.4   3.5        2.2    7.2   0.0    3.3  3  DUF3987         Protein of unknown function (DUF3987)
     0.0089   16.4   0.6     0.0089   16.4   0.6    3.7  3  AAA_16          AAA ATPase domain
  ------ inclusion threshold ------
      0.012   15.8   1.0      0.012   15.8   1.0    2.7  2  DUF2267         Uncharacterized conserved protein (DUF2267)
      0.019   14.9   0.0        2.6    7.9   0.0    2.5  2  RsgA_GTPase     RsgA GTPase
      0.028   14.3   0.2       0.36   10.7   0.0    2.6  2  NACHT           NACHT domain
      0.095   12.6   0.8        0.2   11.5   0.1    1.9  2  Ploopntkinase3  P-loop Nucleotide Kinase3
      0.098   11.7   0.0       0.26   10.3   0.0    1.7  2  MCM             MCM P-loop domain
       0.12   12.8   0.1       0.12   12.8   0.1    2.2  3  NUC130_3NT      NUC130/3NT domain
       0.13   12.3   0.7        2.8    7.9   0.0    2.9  3  AAA_5           AAA domain (dynein-related subfamily)
       0.13   12.5   0.5       0.44   10.8   0.5    1.9  1  DUF3006         Protein of unknown function (DUF3006)
       0.14   11.9   0.0       0.27   11.0   0.0    1.4  1  AAA_29          P-loop containing region of AAA domain
       0.17   12.1   0.0        1.3    9.3   0.0    2.1  2  Roc             Ras of Complex, Roc, domain of DAPkinase
       0.33   10.6   1.6        0.5   10.1   0.5    1.8  2  DUF842          Eukaryotic protein of unknown function (DUF84
        4.6    7.4  12.1        9.1    6.4   0.0    3.5  3  AAA_33          AAA domain


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   1.5e-11   1.6e-08       1     167 [.      43     231 ..      43     232 .. 0.71

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.5e-11
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE..............CCT---C......CS...SSEEEET-EB--CHHHHHHHHHHHHHH CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql..............geeeeas......eravkeelkekekkledfsevreeieketeki 79 
                 ++vvG+  +GKS ++na++ +++ p+g + tT  p+++++              +     +       +a+ ++ ++  + +  + +v  + e+    +
  KIR64994.1  43 VLVVGEPGQGKSQLVNAVVTAQVCPVGDGRTTVLPTVVRHaetacaavvrhpvqR-----ErpagsdGAAALASAGSSVAPYAAVPAVSPAAERTPLPL 136
                 78**************************************555555555555431.....022222233333344444444444445555555444444 PP

                 HTSSSS--SS.........-EEEEEEETTS-SEEEEE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N  80 agankgiskk.........villkilsllvkgltlvDlPGldsvnkrdqelvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                 ++   g+  +         v++  + +ll +gl+lvD+P  d +        + ++++ad++l+v+++  +ls +  l+l  ++   + ++ vv tk
  KIR64994.1 137 DRLAAGVAGIiprgagpahVEVGVPRALLADGLVLVDTPAGDGTIPAS-GTPEAALHRADLVLLVSDSTRELS-VAELNLLLHLTRSHPNVAVVQTK 231
                 4444444444888*****999******************888877766.5667777****************9.55566666666666666666665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   7.4e-07   0.00083       1      98 [.      42     215 ..      42     231 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.4e-07
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE................................................... CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke................................................... 47 
                 +v++vG p  GKS L+na + + ++ v+d   t + ++ ++ ++                                                       
  KIR64994.1  42 RVLVVGEPGQGKSQLVNAVVTAqVCPVGDGRTTVLPTVVRHAET---Acaavvrhpvqrerpagsdgaaalasagssvapyaavpavspaaertplpld 137
                 699****************9984567766554444444444441...122344445566677888999999999999999******************* PP

                 ...............................EEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHH CS
    MMR_HSR1  48 ...............................ielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeele 98 
                                                ++lvDtp   +   +    g   +al +adl+llv d+++e l+  + +l 
  KIR64994.1 138 rlaagvagiiprgagpahvevgvpralladgLVLVDTPA-GD--GTIPASGTPEAALHRADLVLLVSDSTRE-LSVAELNLL 215
                 **************************************8.33..2222455555556789********6633.444444444 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0     0.002       2.2      35      57 ..      39      61 ..      19      64 .. 0.86
   2 ?    0.1   0.0      0.28   3.1e+02      52      84 ..     361     393 ..     358     397 .. 0.87
   3 !    5.9   0.5    0.0048       5.4      56     104 ..     568     618 ..     564     633 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.002
     DUF3987 35 lnLytlvvapsGerKSpvdklvl 57
                ++L +lvv+++G +KS+++++v+
  KIR64994.1 39 PALRVLVVGEPGQGKSQLVNAVV 61
                78999*************99885 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.28
     DUF3987  52 vdklvlrpleeieaelreeyeeelkeyeaekka 84 
                 + + ++++l +ie +lre+ ++ l+e +++ + 
  KIR64994.1 361 LSDEMTDLLSDIEYDLRERTRQILREVDTAFDT 393
                 56789********************99987665 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0048
     DUF3987  56 vlrpleeieaelreeyeeelkeyeaekkaweaelealekkaakak..eaka 104
                  +++ ee+++ + ++ + ++++++++ +a +++++++++++a+ +  +++a
  KIR64994.1 568 FTALTEELQEGIVQSLRSAKQAADTDAAARDRRQREIRARMARLArlHEQA 618
                 578999***********************************9976543333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.6   7.9e-06    0.0089      18     135 ..      33     155 ..      20     228 .. 0.67
   2 ?    4.4   2.2      0.04        45      47     127 ..     289     369 ..     285     386 .. 0.74
   3 ?    1.6   1.7      0.28   3.1e+02      57     129 ..     550     614 ..     521     632 .. 0.49

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.9e-06
      AAA_16  18 rvrsgrp.elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala........ 106
                 rv   +p   vl++Ge+G GKs lv+++ +a       +  g+++ l       + +++ +  e+ ++++ +++ ++e++a ++   + ++        
  KIR64994.1  33 RVQLLDPaLRVLVVGEPGQGKSQLVNAVVTAQVCP---VGDGRTTVL-------PtVVRHA--ETACAAVVRHPVQRERPAGSDGAAALASagssvapy 119
                 3333344588***************9999622222...355555555.......4244444..367777777766655555555444433355666666 PP

      AAA_16 107 .avpelagaea......srllellkrll.allsrder 135
                  avp++++a++       rl++ ++ ++ + + + ++
  KIR64994.1 120 aAVPAVSPAAErtplplDRLAAGVAGIIpRGAGP-AH 155
                 6777777777788888888888888888666665.66 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.04
      AAA_16  47 alekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleealaavpelagaea.............srllellkrll 127
                 +l++d    l+gk d l      +   +++lar ++++ql+++     +e ++++ ee++++++ l++a++             ++l +++++ll
  KIR64994.1 289 RLRRD----LAGKGDAL------ARtAVTMLAR-TVVEQLAAP---LRAELDSQQVEEQAGPISRLHAAQRevdelrrcstrwqNALSDEMTDLL 369
                 56777....88899999......4448888855.******999...4557788888999998888888888888886666556655555555554 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.28
      AAA_16  57 rgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea.......srllellkrllal 129
                 + +c++                 + ++ ll+++ +a+ e+ +e + ++l++++++a+ +a       + +++ ++rl++l
  KIR64994.1 550 TKDCRDT---------------ARQVQRLLRNHFTALTEELQEGIVQSLRSAKQAADTDAaardrrqREIRARMARLARL 614
                 3333333...............2333444444444444444555555554333333333334543333333333333333 PP

>> DUF2267  Uncharacterized conserved protein (DUF2267)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   2.7       2.1   2.3e+03      25      48 ..     303     334 ..     286     413 .. 0.60
   2 ?   15.8   1.0   1.1e-05     0.012      52     113 ..     524     585 ..     515     586 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.1
                 HHHHHHHHTTS-HHHHHHHHTTS........- CS
     DUF2267  25 ravLrtLrdrlteeeaadlaaqL........P 48 
                 r+  ++L++ + e+ aa l+a+L         
  KIR64994.1 303 RTAVTMLARTVVEQLAAPLRAELdsqqveeqA 334
                 44444455555555555555555444443330 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.1e-05
                 HHHHHTT--TTS-----SHHHHHHHHHHTS.....EHHHHHHHHHHHHHHHS-HHHHHHHHH CS
     DUF2267  52 rgllrdgwppvepgkrfdreeflervaeelgvdpedaeqaaraVfaalkealsegeiedvaa 113
                 r+ lr  ++ ++++ +++ +ef+ rv ++ + ++++++++ r  f+al e+l+eg ++ +++
  KIR64994.1 524 RQHLRHRQSAAKTAVQRHVDEFFLRVTKDCRDTARQVQRLLRNHFTALTEELQEGIVQSLRS 585
                 5555555544445559*****************************************99987 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0023       2.6     102     128 ..      43      69 ..      21      75 .. 0.79
   2 ?    4.2   0.0     0.033        37      19      82 ..     196     259 ..     188     274 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0023
                  EEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelktg 128
                  +++vG+ G GKS L+na++  +   +g
   KIR64994.1  43 VLVVGEPGQGKSQLVNAVVTAQVCPVG 69 
                  5679*************9988766665 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.033
                  EEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE- CS
  RsgA_GTPase  19 llivvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeee.eleelkeelealgyevllv 82 
                  l+++vs ++ els+  l+ +L+++ +++ ++ +v +K+Dl+ + +  +e+ + +l+++g++  l+
   KIR64994.1 196 LVLLVSDSTRELSVAELN-LLLHLTRSHPNVAVVQTKTDLVPDWRaVAERNRRHLHEAGVPAALI 259
                  455555556888888887.5677888899************999844555666788888877665 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00032      0.36       2      25 ..      42      65 ..      41      95 .. 0.78
   2 ?    0.2   0.1      0.55   6.2e+02      38      75 ..     545     581 ..     529     589 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00032
                CEEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawa 25
                 v++ Ge+G+GK+ L+  +++a  
  KIR64994.1 42 RVLVVGEPGQGKSQLVNAVVTAQV 65
                589**************9998755 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.55
                 EEEETTTTTTS-...-HCHHHCCCCTS--SSS-CCHHH CS
       NACHT  38 Fflslrelsrsgnarsladllfsqlpepaapvsevwav 75 
                 Ffl++ ++ r++ ar +++ll+ ++ ++ ++ +e+++ 
  KIR64994.1 545 FFLRVTKDCRDT-ARQVQRLLRNHFTALTEELQEGIVQ 581
                 777777777765.5699999999999999999996554 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00018       0.2       6      72 ..      43     111 ..      40     126 .. 0.66
   2 ?   -2.8   0.1       4.5     5e+03     110     136 ..     399     425 ..     383     441 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00018
  Ploopntkinase3   6 iylvGqPGaGkstlmaeltkgfdrskveqeeetvphdvlvdrttGevvgaelGkrreafsGtd...alas 72 
                     + +vG+PG Gks+l+ ++ ++ +    ++++ tv   v+++  t   + +   ++re  +G+d   alas
      KIR64994.1  43 VLVVGEPGQGKSQLVNAVVTAQVCPVGDGRT-TVLPTVVRHAETACAAVVRHPVQRERPAGSDgaaALAS 111
                     568************9998887766666555.66666666555544444445555555555441116665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.5
  Ploopntkinase3 110 Gyevtlalldhdqadawrkarskklgr 136
                     G++v   +l+   a a r++r   ++r
      KIR64994.1 399 GWDVFEEWLERSLAAAARENREWLVRR 425
                     555555555555555555555444433 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00023      0.26      57      79 ..      40      62 ..      24     114 .. 0.71
   2 ?   -3.1   0.0         3   3.4e+03     192     210 ..     188     206 ..     186     213 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00023
                S-EEEEEESSTSTHHHHHHHHHH CS
         MCM 57 dinvllvgdpgtaKsqlLkyvek 79
                   vl+vg+pg +Ksql+++v +
  KIR64994.1 40 ALRVLVVGEPGQGKSQLVNAVVT 62
                5689**************99863 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3
                 HHHHHHSSEEEEE-SSTTH CS
         MCM 192 aalLsrFDlifvllDkvde 210
                 +a L r Dl++++ D++ e
  KIR64994.1 188 EAALHRADLVLLVSDSTRE 206
                 5679999*****9998765 PP

>> NUC130_3NT  NUC130/3NT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       4.6   5.2e+03      23      40 ..      25      46 ..      23      47 .. 0.66
   2 ?   -3.1   0.0       9.2     1e+04      16      36 ..     361     381 ..     359     383 .. 0.68
   3 ?   12.8   0.1    0.0001      0.12      11      43 ..     551     583 ..     541     585 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.6
  NUC130_3NT 23 lLlehhs....vLhpdlRkklv 40
                lL++ h+     L+p lR  +v
  KIR64994.1 25 LLRTVHHkrvqLLDPALRVLVV 46
                5655554466699999997665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.2
  NUC130_3NT  16 fpqeLselLlehhsvLhpdlR 36 
                 +++e+++lL++ +  L   +R
  KIR64994.1 361 LSDEMTDLLSDIEYDLRERTR 381
                 567888888876666666666 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 0.0001
  NUC130_3NT  11 ketkefpqeLselLlehhsvLhpdlRkklvqaL 43 
                 k++ + + ++ +lL++h + L+ +l + +vq+L
  KIR64994.1 551 KDCRDTARQVQRLLRNHFTALTEELQEGIVQSL 583
                 667788899***********************9 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0025       2.8       2      19 ..      43      60 ..      42      77 .. 0.88
   2 ?   -2.2   0.0       3.4   3.8e+03      85     133 ..     212     257 ..     208     259 .. 0.65
   3 ?    1.3   0.0      0.27   3.1e+02      71     106 ..     347     386 ..     308     420 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0025
                EEEE--SSSSHHHHHHHG CS
       AAA_5  2 vlLvGppGtgKselaerl 19
                vl+vG+pG gKs+l+  +
  KIR64994.1 43 VLVVGEPGQGKSQLVNAV 60
                89************9866 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.4
                 HHHHHHSSEEE..-SSSEEE---......-EEEEEESS--.-TT-TTHH CS
       AAA_5  85 Llslleerrllleeggelvkaknddllerfrviatanpldrslnelspa 133
                 L+ ll+  r +  ++  +v+ k d l +++r +a+ n+++  ++ + +a
  KIR64994.1 212 LNLLLHLTRSH--PNVAVVQTKTD-LVPDWRAVAERNRRHLHEAGVPAA 257
                 66666666666..55666655554.677799999999998665555555 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.27
                 EESGGG--HHHHHHHH....HHHHSSEEE..-SSSEEE-- CS
       AAA_5  71 lDEveraesevlnsLl....slleerrllleeggelvkak 106
                 +DE+ r+++ ++n+L      ll++ +++l e+++++  +
  KIR64994.1 347 VDELRRCSTRWQNALSdemtDLLSDIEYDLRERTRQILRE 386
                 699******9999886222258888888888877776555 PP

>> DUF3006  Protein of unknown function (DUF3006)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   0.00039      0.44      27      66 ..     570     611 ..     567     612 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
     DUF3006  27 dLpegakeGdvLeie.dd.eieldpeetekrkeriqelldrL 66 
                  L e+ +eG v +++  + +   d++++++r+++i++++ rL
  KIR64994.1 570 ALTEELQEGIVQSLRsAKqAADTDAAARDRRQREIRARMARL 611
                 588999*****999953435*********************9 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00024      0.27      19      47 ..      37      65 ..      27      70 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00024
      AAA_29 19 idlkgatlltGpsGsGKSTllDAiqalLv 47
                +d++  +l++G+ G GKS l+ A+ +  v
  KIR64994.1 37 LDPALRVLVVGEPGQGKSQLVNAVVTAQV 65
                4444478****************988655 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0011       1.3       1      24 [.      42      65 ..      42      82 .. 0.89
   2 ?   -0.1   0.0      0.94   1.1e+03      78     119 ..     192     233 ..     184     234 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0011
                EEEEESSTTSSHHHHHHCHCT-CC CS
         Roc  1 KvvlvGdsgvGKtsllkrfvedkf 24
                +v++vG+ g+GK+ l++ +v+ ++
  KIR64994.1 42 RVLVVGEPGQGKSQLVNAVVTAQV 65
                689**************9998776 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.94
                 CTSCEEEEEEEGHHHHCHHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  78 reaalailvydsrssenlkeWlkelkkvagkspvilvgnkiD 119
                 ++a+l++lv ds+++ ++ e    l+  +++ +v +v++k+D
  KIR64994.1 192 HRADLVLLVSDSTRELSVAELNLLLHLTRSHPNVAVVQTKTD 233
                 67889999999999999988888888888889999999*999 PP

>> DUF842  Eukaryotic protein of unknown function (DUF842)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.9   3.2e+03      75      92 ..     350     367 ..     343     393 .. 0.60
   2 ?   10.1   0.5   0.00044       0.5      50     105 ..     550     607 ..     524     614 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.9
      DUF842  75 LqrcvmvCqdkakdklgp 92 
                 L rc  + q+ ++d+++ 
  KIR64994.1 350 LRRCSTRWQNALSDEMTD 367
                 566666666666666543 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00044
      DUF842  50 vekCseplqkaqkvvqqEleqfqerLqrcvmvCqdkakdklgpns..sekqtakaeke 105
                  ++C + ++++q+++ + ++ + e+Lq+ + +   +ak++ ++++   ++++ +++++
  KIR64994.1 550 TKDCRDTARQVQRLLRNHFTALTEELQEGIVQSLRSAKQAADTDAaaRDRRQREIRAR 607
                 689**********************************999977431244444455555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0081       9.1       2      22 ..      43      63 ..      43     103 .. 0.92
   2 ?   -0.7   0.3       1.3   1.4e+03      51      51 ..     399     399 ..     307     486 .. 0.51
   3 ?    4.0   4.5     0.046        51      26      93 ..     547     613 ..     523     619 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0081
      AAA_33  2 vllvGlpGsGKstlaerllkk 22
                vl+vG pG GKs+l+  ++ +
  KIR64994.1 43 VLVVGEPGQGKSQLVNAVVTA 63
                799************998754 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.3
      AAA_33  51 v 51 
                  
  KIR64994.1 399 G 399
                 1 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.046
      AAA_33  26 vllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrrer...arflklar 93 
                  ++++d  r++ +  ++q++  +++++  + + +++++++ +sa++++ +da  ++rr+r   ar+ +lar
  KIR64994.1 547 LRVTKDC-RDTAR--QVQRL-LRNHFTALTEELQEGIVQSLRSAKQAADTDAAARDRRQReirARMARLAR 613
                 3344332.22222..33333.34567777999999*********************999977677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 4491.99
//
Query:       KIR64995.1  [L=494]
Description: hypothetical protein TK50_05525 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-08   32.2   0.0    0.00042   20.4   0.0    2.2  2  Dynamin_N  Dynamin family
    6.3e-05   23.0   0.0    0.00048   20.2   0.0    2.1  1  MMR_HSR1   50S ribosome-binding GTPase
  ------ inclusion threshold ------
       0.14   11.4   0.0        0.2   10.9   0.0    1.2  1  GBP        Guanylate-binding protein, N-terminal domain


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     7e-08   0.00042       1      26 [.      45      70 ..      45      74 .. 0.94
   2 !    9.6   0.0   0.00015      0.87     101     137 ..     136     173 ..     126     188 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 7e-08
                EEEEEBTTTTHHHHHHHHHTS--S-- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilpr 26
                +av G   sGKS++lna++ge++ p+
  KIR64995.1 45 VAVAGGWRSGKSTLLNAIMGEQVAPV 70
                799********************997 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00015
                 -SEEEEE---B-SSSGTTS.HHHHHHHSTTEEEEEEEE CS
   Dynamin_N 101 kgltlvDlPGldsvnkrdq.elvkeyikkadiilavts 137
                  +ltl+D+P + + ++r    +v++++++ad++l++t 
  KIR64995.1 136 RQLTLIDTPAVADPDERGRaPVVERALRDADALLYLTR 173
                 589**********88877758899999*********96 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   8.1e-08   0.00048       1      85 [.      44     174 ..      44     202 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 8.1e-08
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE..................................................E CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke..................................................i 48 
                 +va++G   +GKStL+na++ge +a v+   g  + + ++                                                          +
  KIR64995.1  44 RVAVAGGWRSGKSTLLNAIMGEqVAPVAGVDGEDTFTWYEDGP----ApgatawstdgvpqelavtrsatglrvdgpgwrpgelrdlvvrwptralrqL 138
                 69999***************97455665555554444444322....122334444455556666666667777777777777777777777777777* PP

                 EEEECGGCSSHHHHHH.HHHHHHHHHHCTSEEEEEEET CS
    MMR_HSR1  49 elvDtpGliegaseek.glgkaflaleeadlillvvda 85 
                 +l+Dtp + +   +e+ +     +al++ad++l++ + 
  KIR64995.1 139 TLIDTPAVAD--PDERgRAPVVERALRDADALLYLTRD 174
                 *******544..23332344444445579999999862 PP

>> GBP  Guanylate-binding protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.3e-05       0.2      24      44 ..      45      82 ..      31     152 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.3e-05
                EEEEEBTTSSHHHHHHHHHT.................B CS
         GBP 24 vaivGlyRkGksfLlnklar.................k 44
                va++G +R Gks Lln +++                  
  KIR64995.1 45 VAVAGGWRSGKSTLLNAIMGeqvapvagvdgedtftwY 82
                9****************999666666666655555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3409.11
//
Query:       KIR64996.1  [L=146]
Description: hypothetical protein TK50_05535 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 978.03
//
Query:       KIR64997.1  [L=120]
Description: thioredoxin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-26   90.6   0.0    6.2e-26   90.4   0.0    1.1  1  Thioredoxin    Thioredoxin
    1.8e-08   34.8   0.0      2e-07   31.4   0.0    2.0  1  Thioredoxin_2  Thioredoxin-like domain
    1.5e-07   31.7   0.0    0.00012   22.3   0.0    2.2  2  Thioredoxin_8  Thioredoxin-like
    6.9e-05   22.6   0.0    8.4e-05   22.3   0.0    1.1  1  Thioredoxin_9  Thioredoxin
    0.00013   21.7   0.0       0.11   12.2   0.0    2.1  2  Redoxin        Redoxin
     0.0049   16.3   0.0     0.0055   16.1   0.0    1.1  1  OST3_OST6      OST3 / OST6 family, transporter family
  ------ inclusion threshold ------
      0.022   15.0   0.0      0.039   14.1   0.0    1.5  1  Thioredoxin_7  Thioredoxin-like
      0.065   13.2   0.0      0.089   12.7   0.0    1.3  1  AhpC-TSA       AhpC/TSA family


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.0   2.8e-29   6.2e-26       2     102 ..       3     101 ..       2     102 .. 0.95

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 2.8e-29
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHH CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaa 99 
                  +++lt++nF+e     +  vlv+F+A+wCg+Ck++aP++e+ ++++  ++++ kvd++++++l +k+++++iPt++ +++g  v    ga ++++l++
   KIR64997.1   3 TVELTTANFDEVAGG-DGIVLVDFWAEWCGPCKRFAPVYERSSDKHP-DIVFGKVDTEAQQELGAKFDIRSIPTIMAIRDGVIVFAQPGALPESALEN 98 
                  57899****987776.*******************************.************************************************99 PP

                  HHH CS
  Thioredoxin 100 flk 102
                   ++
   KIR64997.1  99 LIE 101
                  987 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0     9e-11     2e-07       6     108 ..      19      99 ..      14     100 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 9e-11
  Thioredoxin_2   6 kpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgkeivarlpGyv 100
                      vlv+f++++C+ Ck++  + +              +++ ++++ ++++++++           el+ k+++r+ Pti  + dg  iv+  pG++
     KIR64997.1  19 GIVLVDFWAEWCGPCKRFAPVYERS-----------SDKHPDIVFGKVDTEAQQ-----------ELGAKFDIRSIPTIMaIRDGV-IVFAQPGAL 91 
                    679**************99988888...........566767888888888877...........6************77699999.99999**** PP

  Thioredoxin_2 101 paeeleal 108
                    p+  le l
     KIR64997.1  92 PESALENL 99 
                    **999876 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   5.4e-08   0.00012       3      31 ..      20      48 ..      17      54 .. 0.90
   2 !    8.8   0.0   0.00092       2.1      59      90 ..      48      79 ..      40      83 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 5.4e-08
                   EEEEEE--SSSHHHHHHHHHHHHHHHHHH CS
  Thioredoxin_8  3 vvlLyfgaswcppckaftpklkelyeklk 31
                   +vl+ f+a+wc pck+f p   + ++k+ 
     KIR64997.1 20 IVLVDFWAEWCGPCKRFAPVYERSSDKHP 48
                   89******************999999886 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00092
                   TTSEE.EE-TT-HHHHTT-S--TT-SEEEEE- CS
  Thioredoxin_8 59 kpwlsvpfddkkrnklkkkynvkaiPtlvvld 90
                   ++ ++  +d + +++l  k+++ +iPt++ ++
     KIR64997.1 48 PDIVFGKVDTEAQQELGAKFDIRSIPTIMAIR 79
                   455555677888***************99775 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   3.8e-08   8.4e-05      49     123 ..      26      97 ..       7     104 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 3.8e-08
                    --TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS-HHHHH CS
  Thioredoxin_9  49 tedwCgDaavnvPvlakiaelnpnievkillrdenlelmdqyltngaraiPtliildeegeelgvwgerPaevqe 123
                     ++wCg + ++ Pv ++ ++  p+i +  +  ++++el  ++     r+iPt++ + +++ ++++ g +P+ + e
     KIR64997.1  26 WAEWCGPCKRFAPVYERSSDKHPDIVFGKVDTEAQQELGAKFDI---RSIPTIMAIRDGVIVFAQPGALPESALE 97 
                    579***************************************65...************9999999999998766 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.9e-05      0.11      17      52 ..       5      42 ..       1      49 [. 0.76
   2 !    8.8   0.0   0.00054       1.2      82     146 ..      45      99 ..      36     101 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.9e-05
                CEEEEEHHHHTTSE..EEEEEESTTT-HHHHHTHH.HHH CS
     Redoxin 17 dgnsvslsefkgkk..vvvnfvpgafcPtCsaehp.yle 52
                + ++ + +e++g+   v+v f++  +c++C++ +p y++
  KIR64997.1  5 ELTTANFDEVAGGDgiVLVDFWAE-WCGPCKRFAPvYER 42
                566777777677666678899999.******99887776 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00054
                 HTT-TSEE.EE-TTSHHHHHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSCHTSTTSHHHH CS
     Redoxin  82 keglkfpv.lsDgsaaftkalGlrleedaseglrtpryavidedgkvvylevepepeteesnaeav 146
                 ++++++++  +D   + +++lG++++      +r+  +++ ++dg++v  + ++ p   es +e++
  KIR64997.1  45 DKHPDIVFgKVDT--EAQQELGAKFD------IRSIPTIMAIRDGVIVFAQPGALP---ESALENL 99 
                 5555555555554..67778885543......89999****************999...6666665 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.4e-06    0.0055      46     103 ..      30      79 ..      22     118 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.4e-06
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfp 103
                 C +C+ f+p +e    s     ++k+ +++F+kvd +  +++ +k+ ++s+P ++ + 
  KIR64997.1  30 CGPCKRFAPVYER---S-----SDKHPDIVFGKVDTEAQQELGAKFDIRSIPTIMAIR 79 
                 7788888887774...3.....344569**************************9876 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.7e-05     0.039      20      59 ..      21      56 ..      18      79 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-05
                   EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEES CS
  Thioredoxin_7 20 vlvffgaswcftCqalerdflsdeevkaalaekfvllrvd 59
                   vlv+f a+wc++C++++ + + + +       ++v+ +vd
     KIR64997.1 21 VLVDFWAEWCGPCKRFAPVYERSSDKH----PDIVFGKVD 56
                   8***************87777664433....356666555 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     4e-05     0.089      19      50 ..      10      42 ..       2      70 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4e-05
                ECHHHTT..SEEEEEEESTST-CCHHHHHHHHHH CS
    AhpC-TSA 19 slsdykg..kpvvlffypkdwcpvCttelpalak 50
                ++++++g   +v++ f+++ wc +C++ +p +++
  KIR64997.1 10 NFDEVAGgdGIVLVDFWAE-WCGPCKRFAPVYER 42
                556664445688999****.*****998776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 868.06
//
Query:       KIR64998.1  [L=175]
Description: hypothetical protein TK50_05550 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.069   13.5   2.3       0.22   11.9   0.8    2.1  2  TetR_C_20  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_C_20  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8   1.2e-05      0.22      37      95 ..      73     129 ..      63     135 .. 0.86
   2 ?    1.8   0.1     0.016   2.8e+02      36      71 ..     129     164 ..     123     171 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.2e-05
                 -TTT-GGGHHHHHHHHHHHHHHHT-SS--HHHHHHHHHHHHHHHHHHHHHHTTSS-HHH CS
   TetR_C_20  37 dasaaaevdrvaavvealllralgeeePteedadlarvlsdvwlglLvawlngrasitd 95 
                  a++a+++d v+avv+a+ +r  g   P+++  dl+++l+++   + v++l +ra+ +d
  KIR64998.1  73 AAGRASDSDLVRAVVAAIYARHDGATAPEDRLTDLVDLLAACR--ATVRVLRRRADPAD 129
                 577889*********************************9986..56788888887776 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.016
                 --TTT-GGGHHHHHHHHHHHHHHHT-SS--HHHHHH CS
   TetR_C_20  36 adasaaaevdrvaavvealllralgeeePteedadl 71 
                 + a+  + v++vaa v+++ + a + ++ t++d++ 
  KIR64998.1 129 DSAAYRQWVQSVAARVRRATAGAPAGGDVTPTDRRF 164
                 555556778999999999887777666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1221.23
//
Query:       KIR64999.1  [L=207]
Description: rRNA methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-24   85.3   0.0    5.1e-24   85.0   0.0    1.1  1  SpoU_methylase  SpoU rRNA Methylase family


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.0   2.9e-28   5.1e-24       2     142 .]      59     195 ..      58     195 .. 0.93

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 2.9e-28
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST..T-SEGCCSHHH CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl..kgkslseidlk 94 
                     ++v++++ ++  N+G+++R a+af a e+++v++r++   n   +r a+ +  +  +++++++ee+ ++  ++++ +v++++  ++++l++++l+
      KIR64999.1  59 FHVAIENWQHDLNIGTVVRNANAFLAAEVHIVGRRRW---N---RRGAMVTDRYQHVRHHETIEEFAAWAADRDLPVVGIDNlpGSRPLETTSLP 147
                     68999****************************7775...5...466677777777779***********************99999999***** PP

                     TTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase  95 ekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
                     +++al+fG+E+ Gls+ +++++d+l +I ++g+++S+N  vA +i+++
      KIR64999.1 148 RRCALLFGQEGPGLSEAARSACDQLFSIAQYGSTRSINAGVASGIAMH 195
                     *********************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1320.40
//
Query:       KIR65000.1  [L=212]
Description: hypothetical protein TK50_05560 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1456.14
//
Query:       KIR65001.1  [L=292]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-13   49.8   0.0    4.5e-13   49.2   0.0    1.3  1  bPH_2     Bacterial PH domain
  ------ inclusion threshold ------
       0.24   11.5   1.7        4.5    7.4   0.0    2.8  3  Tom5      Mitochondrial import receptor subunit or translocas


Domain annotation for each model (and alignments):
>> bPH_2  Bacterial PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0     5e-17   4.5e-13       4      77 ..     191     262 ..     186     265 .. 0.93

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 5e-17
       bPH_2   4 ttytitdrrvvvrsGillrktldiplerIqavsleqsllqrrlglgtivietaggsraevelplrsvpdaeela 77 
                  ++ +t++rv+v  Gi++rk   +pl+r++++++eqs+ +r l++gt v+e+ag+++  +  ++ ++p+++el+
  KIR65001.1 191 DRFILTNKRVMVVNGIVTRKVAMMPLARVTDMKYEQSPTGRALNYGTFVLESAGQDQ--ALREIKNLPNPNELY 262
                 46889***************************************************8..9999*******9997 PP

>> Tom5  Mitochondrial import receptor subunit or translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0   0.00051       4.5       5      21 ..      79      95 ..      77      97 .. 0.86
   2 ?    2.0   0.2     0.024   2.1e+02      28      38 ..     166     176 ..     159     176 .. 0.81
   3 ?   -1.8   0.0      0.37   3.3e+03      16      27 ..     243     254 ..     242     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00051
        Tom5  5 gPpqpSeeEikaaeaeA 21
                +Ppq+SeeE++  + +A
  KIR65001.1 79 QPPQISEEELAGLRVDA 95
                799*******9888777 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.024
        Tom5  28 faaaaalLyls 38 
                  +++a+lL+++
  KIR65001.1 166 LTTIAVLLWFA 176
                 6899*****97 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.37
        Tom5  16 aaeaeArqtvkn 27 
                 a++ +A +++kn
  KIR65001.1 243 AGQDQALREIKN 254
                 7899*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2126.50
//
Query:       KIR65002.1  [L=275]
Description: RNA polymerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-16   57.5   0.2    1.2e-15   56.9   0.2    1.4  1  Sigma70_r4_2  Sigma-70, region 4
    1.7e-12   46.6   0.6    2.8e-12   45.9   0.6    1.4  1  Sigma70_r4    Sigma-70, region 4
    5.9e-08   32.4   0.6    5.9e-08   32.4   0.6    1.6  2  Sigma70_r2    Sigma-70 region 2
  ------ inclusion threshold ------
      0.021   14.4   0.0       0.03   13.9   0.0    1.2  1  GerE          Bacterial regulatory proteins, luxR family
      0.035   14.0   0.2      0.051   13.5   0.2    1.2  1  Sigma70_ECF   ECF sigma factor


Domain annotation for each model (and alignments):
>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.2   3.4e-19   1.2e-15       3      54 .]     106     157 ..     104     157 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 3.4e-19
                   HHHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   3 alrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                    l + l++Lp rqr++++lr++e++s +++A+ll+is+gtVks+ sRA++ L
    KIR65002.1 106 VLWRQLRALPSRQRAVLVLRFYEDMSEAQTAALLEISPGTVKSQTSRALATL 157
                   68899********************************************976 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.6   7.8e-16   2.8e-12       2      50 .]     111     159 ..     110     159 .. 0.97

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 7.8e-16
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 L+ Lp r+r vl+lrf+e+++ +++++ l iS ++V++  +rAl  LR+
  KIR65002.1 111 LRALPSRQRAVLVLRFYEDMSEAQTAALLEISPGTVKSQTSRALATLRR 159
                 789********************************************95 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.6   1.6e-11   5.9e-08       7      69 ..      20      80 ..      14      82 .. 0.93
   2 ?   -3.5   0.1       2.5   9.1e+03      11      25 ..     155     168 ..     151     170 .. 0.61

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.6e-11
                HHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSS CS
  Sigma70_r2  7 plvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrr 69
                  ++r a+ l+g++a+aeDl+Q a+ + + a +r+  + + + + ++ r++ n+   ++R+r+
  KIR65002.1 20 GALLRTAYLLTGDWATAEDLLQTALTKTYLACKRLG-GIE-AIEPYARRVMVNTSTSWWRRRW 80
                6789*****************************999.888.9*******************98 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.5
                 HHHHHCT-THHHHHH CS
  Sigma70_r2  11 rlarrllgsgadaeD 25 
                 + +rr+lg +  a D
  KIR65002.1 155 ATLRRRLGAQ-AALD 168
                 5677777765.5555 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   8.4e-06      0.03       4      45 ..     115     157 ..     112     170 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.4e-06
                 -HHHHHHHHH.HCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHH CS
        GerE   4 skRErevLrl.laeGksnkeIAeelniSekTVkvhksnimkKL 45 
                  +R+r vL l ++e +s  + A+ l+iS+ TVk++ s+++  L
  KIR65002.1 115 PSRQRAVLVLrFYEDMSEAQTAALLEISPGTVKSQTSRALATL 157
                 5788888865489**********************99987654 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   1.4e-05     0.051     117     175 ..      95     153 ..      59     165 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
  Sigma70_ECF 117 sdspdelleLdealerllsldpeqarlvelrkleGlsveEiAeklgvskrtverrlala 175
                  +d+ ++ l+ d    +l +l+ +q+ ++ lr+ e +s + +A+ l++s  tv+ +   a
   KIR65002.1  95 VDEIEQQLDRDVLWRQLRALPSRQRAVLVLRFYEDMSEAQTAALLEISPGTVKSQTSRA 153
                  467788888888999*************************************8654443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1852.41
//
Query:       KIR65003.1  [L=430]
Description: hypothetical protein TK50_05575 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 3181.66
//
Query:       KIR65004.1  [L=293]
Description: phosphoesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-06   28.0   0.0    2.4e-06   27.9   0.0    1.3  1  PHP            PHP domain
     0.0017   19.0   2.2        2.5    8.8   0.2    3.6  4  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
     0.0029   17.5   0.1       0.63   10.0   0.0    3.2  4  DUF3052        Protein of unknown function (DUF3052)


Domain annotation for each model (and alignments):
>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   4.1e-10   2.4e-06       1      69 [.      13      75 ..      13     247 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 4.1e-10
                EEEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTTHHHHHHHHHHHHTTTTSEEEEEEE.... CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         PHP  1 dlHvHteyslldgalsieelvkkakelglkaiaiTDhgnlfgyvefykaakkkykagikpiiGleayva 69
                dlH+H++ s  dg+l++ elv++a e gl+ +aiTDh+   g   ++ a+      g++++ G+e++  
  KIR65004.1 13 DLHAHSTAS--DGTLTPAELVRAAGEAGLDVVAITDHDTTTGWAPAVAAL----PPGLTLVRGAEISCR 75
                799998766..778999***********************9999999888....457899999886655 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.038   2.3e+02      22      50 ..      15      44 ..       6      59 .. 0.71
   2 !    8.8   0.2   0.00042       2.5      22      79 ..     102     159 ..      87     170 .. 0.77
   3 !    4.4   0.0    0.0097        58      25      51 ..     200     229 ..     184     236 .. 0.77
   4 ?    0.6   0.0      0.15     9e+02      26      46 ..     228     251 ..     224     269 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.038
                   HHHHHHHHT.SGHHHHHHHHHHTTCTSTTS CS
  Acyl-CoA_dh_N 22 haaewdeeg.efprelwkklaelGllgitv 50
                   ha+    +g  +p el+++++e+Gl  +++
     KIR65004.1 15 HAHSTASDGtLTPAELVRAAGEAGLDVVAI 44
                   445555555458999*********976666 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00042
                    HHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHH CS
  Acyl-CoA_dh_N  22 haaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradagla 79 
                      a++++++e+  e++ +l +++ + +++pe   Gag++++    +a+ l ra+++  
     KIR65004.1 102 ELARVRAAREVRGERIVALLRADGVELSWPEILAGAGGGTVGRPHIAQALIRAGLVAT 159
                    35555566677777766776666669**************************998643 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0097
                    HHH..HHT.SGHHHHHHHHHHTTCTSTTS- CS
  Acyl-CoA_dh_N  25 ewd..eeg.efprelwkklaelGllgitvp 51 
                    + +  ++g  +p+el+ +la++Gl+g+   
     KIR65004.1 200 HPRasRRGrIVPDELIVELAAAGLAGLEAD 229
                    443346776899**************9875 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.15
                    HHHHTSGHHHH..HHHH.HHTTCT CS
  Acyl-CoA_dh_N  26 wdeegefprel..wkkl.aelGll 46 
                    +d+e++ p e+  +++l aelGl+
     KIR65004.1 228 ADHEDHSPAERahVRALaAELGLF 251
                    55555667554457777689**98 PP

>> DUF3052  Protein of unknown function (DUF3052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.017        99      77     108 ..      12      43 ..       6      57 .. 0.78
   2 !   10.0   0.0   0.00011      0.63      88     122 ..     140     174 ..     133     177 .. 0.88
   3 ?   -0.6   0.0       0.2   1.2e+03      80     107 ..     199     229 ..     181     247 .. 0.64
   4 ?   -1.2   0.0      0.31   1.8e+03      89     121 ..     235     267 ..     218     269 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.017
     DUF3052  77 iwlltpkagreghvepseiaeaaktaGLvqts 108
                 i l +  +  +g+++p+e+  aa  aGL    
  KIR65004.1  12 IDLHAHSTASDGTLTPAELVRAAGEAGLDVVA 43 
                 6677788999******************8654 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00011
     DUF3052  88 ghvepseiaeaaktaGLvqtssvsvskdwsgtrlv 122
                 g+v   +ia+a   aGLv+t++ +++++w g r  
  KIR65004.1 140 GTVGRPHIAQALIRAGLVATTTEAFGPEWLGERYR 174
                 6788899***********************99865 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.2
     DUF3052  80 ltpkagreghvepsei.ae..aaktaGLvqt 107
                   p+a r+g + p+e+  e  aa +aGL++ 
  KIR65004.1 199 AHPRASRRGRIVPDELiVElaAAGLAGLEAD 229
                 3477788887777765133225666777655 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.31
     DUF3052  89 hvepseiaeaaktaGLvqtssvsvskdwsgtrl 121
                   e ++++  a   GL  t s ++  +++++rl
  KIR65004.1 235 PAERAHVRALAAELGLFVTGSSDFHGTHKTVRL 267
                 456778888888899999999999888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 2308.96
//
Query:       KIR65005.1  [L=204]
Description: antibiotic resistance protein MarC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-49  165.9  12.8    8.4e-49  165.7  12.8    1.0  1  MarC       MarC family integral membrane protein
  ------ inclusion threshold ------
       0.64    9.6  26.8          2    7.9   2.8    3.8  4  DUF998     Protein of unknown function (DUF998)
        4.7    6.8   8.7       0.18   11.5   1.0    2.1  2  CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like


Domain annotation for each model (and alignments):
>> MarC  MarC family integral membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.7  12.8   1.4e-52   8.4e-49       2     201 ..       4     195 ..       3     197 .. 0.95

  Alignments for each domain:
  == domain 1  score: 165.7 bits;  conditional E-value: 1.4e-52
        MarC   2 kaiikafvsLlaiinplgnvpvflslleevskeerkrialkasilallillvfllfGelilklfgisidalkiaGgillfliaidmlkakqkkekkkks 100
                 k + ++fv+Ll+i++p g +p+fl+l+    ++ r+r a +a+ lal +++vf+++G+++l+++ + ++al+ aGg+ll+l+a+++l +k+ +    ++
  KIR65005.1   4 KLFGEVFVTLLVIVDPPGMMPIFLALTGPLAARDRNRAAWQAVALALGVIVVFAVAGQTLLAYLHVDLPALQAAGGLLLILVALELLTGKADD----PT 98 
                 67999*************************************************************************************993....22 PP

        MarC 101 eeeeseekdeiavvPLAlPliaGPgaittvlvlaseassivekvavvlaillaalitllilllsslilrllgktginaleRlmGllLvalavqlivdGi 199
                 +++    + +ia+vPL +Pl+aGPgai ++++  ++a    ++ a+ +ai++++l+++++l+ s  i++ l+  gi++l+R+ GllL+a+avqli d+i
  KIR65005.1  99 QQA----TSNIALVPLGTPLLAGPGAIVATMLFVQQADRALDYGAIAAAIVAVMLTVWVVLRFSGGIVKILRPGGIEVLTRIAGLLLAAIAVQLIADAI 193
                 222....469****************************************************************************************9 PP

        MarC 200 ke 201
                 + 
  KIR65005.1 194 AA 195
                 75 PP

>> DUF998  Protein of unknown function (DUF998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.8   0.00034         2     118     153 ..      25      64 ..      19      74 .. 0.62
   2 ?    6.0   6.7    0.0013       7.8       2      81 ..      76     154 ..      75     154 .. 0.76
   3 ?    1.1  12.2     0.042   2.5e+02     115     181 ..     119     184 ..     110     186 .. 0.80
   4 ?    3.5   1.5    0.0082        49      67      88 ..     172     193 ..     162     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00034
      DUF998 118 vavllla....saarrrawallrlvggvallllvaalvwl 153
                 + ++l +    ++++r+aw++++l+ gv ++++va+ ++l
  KIR65005.1  25 IFLALTGplaaRDRNRAAWQAVALALGVIVVFAVAGQTLL 64 
                 3344333553367777777777777777777777765554 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0013
      DUF998   2 aaallalavilaaallrpgydplrhaiSeLgaeggpggwlfnaglvllgllvlalavgllraargragragrlllavagl 81 
                 aa++l+l++++++ l++   dp+++a S  ++    ++ l   g +++++l++  a   + ++++ a+++++++l+v+++
  KIR65005.1  76 AAGGLLLILVALELLTGKADDPTQQATSNIALVPLGTPLLAGPGAIVATMLFVQQAD-RALDYGAIAAAIVAVMLTVWVV 154
                 789999999*******9999************8666666666666666666665443.3334888999999999998875 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.042
      DUF998 115 alavavlllasaarrrawallrlvggvallllvaalvwllaa...aldgslllGlaerllvlaitawlla 181
                 + +va +l+     + a+++l + +++a++++v+++vw++++   ++++ l++G +e l  +a++++ ++
  KIR65005.1 119 GAIVATMLFV----QQADRALDYGAIAAAIVAVMLTVWVVLRfsgGIVKILRPGGIEVLTRIAGLLLAAI 184
                 4455555555....99**************************9999999999999998888877776655 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.0082
      DUF998  67 ragragrlllavaglglvlagv 88 
                  ++r+++llla+ ++ l+++++
  KIR65005.1 172 VLTRIAGLLLAAIAVQLIADAI 193
                 678999***********99984 PP

>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.0     3e-05      0.18     135     174 ..      36      76 ..       9      92 .. 0.82
   2 ?   -2.1   3.5      0.42   2.5e+03     121     165 ..     141     188 ..      77     203 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3e-05
   CPP1-like 135 nrKekklgravlltlvgLvvGlllGsllasllqvd.valsg 174
                 +++++  ++av+l+l+++vv +++G+ l  +l+vd +al++
  KIR65005.1  36 RDRNRAAWQAVALALGVIVVFAVAGQTLLAYLHVDlPALQA 76 
                 68999***************************999665552 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.42
   CPP1-like 121 lllalglgasiyflnrKek...klgravlltlvgLvvGlllGsllasl 165
                  + +++++++++++ r ++   k++r  ++ ++  ++Glll+++ ++l
  KIR65005.1 141 AAAIVAVMLTVWVVLRFSGgivKILRPGGIEVLTRIAGLLLAAIAVQL 188
                 233344444444444433333344444455555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1511.74
//
Query:       KIR65006.1  [L=283]
Description: hypothetical protein TK50_05595 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-52  176.6  15.7    1.1e-51  176.2  15.7    1.1  1  DUF2236   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2236  Uncharacterized protein conserved in bacteria (DUF2236)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.2  15.7   6.1e-56   1.1e-51       1     214 [.      16     250 ..      16     261 .. 0.86

  Alignments for each domain:
  == domain 1  score: 176.2 bits;  conditional E-value: 6.1e-56
     DUF2236   1 wryagdelilllgalaalllqaahplvltgvldhstf.adplrRllrTaqfiltvvygsgeeaeaaaarVrllHaavrgtd.asgerygainpedllwv 97 
                 w+++ + +il++++l+ l+lqa+hp++++gv+++s++ +d+++Rl rTa++++t++yg+++eaeaa+ar+r+lH ++r+td ++ge+++ + pe+l+wv
  KIR65006.1  16 WKVHEE-PILIVAGLRSLYLQALHPRAMAGVAQNSNYrTDAWGRLVRTATYVATTIYGTTAEAEAAGARLRRLHGRMRATDpDTGEEFRIDEPELLRWV 113
                 777776.9999999***********************888****************************************97888************** PP

     DUF2236  98 hatfsasflraygrtvgpltaeeeeayyhewrrvgrllGvpdrllpatraafdayldemvlaelevdeearel..........gdarll.......... 176
                 h+t+++sfl +++r + plt++e + yy e+rr++ l+G++++++p+t a++++y+ ++ +++l+++ ea e           +    +          
  KIR65006.1 114 HVTEVESFLSTARRAGLPLTDAEVDGYYTEQRRAAALVGLDPADVPGTAAEVADYYRQV-RPALRMTREAAETavfltapplpW----Klnlparvgmn 207
                 *********999999999*************************************9988.9************77777755541....15556677788 PP

     DUF2236 177 ..parpalpllrvitrgllppalre...llglpvpwssrdell 214
                   par+a+  ++ ++ +llpp++r+   +lglp    s+d  +
  KIR65006.1 208 lgPARLAYFGVAGTAFALLPPWARRlygGLGLPTTELSADLTV 250
                 99***********************444444553322222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 2125.71
//
Query:       KIR65007.1  [L=142]
Description: Fur family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-22   79.0   0.0    3.3e-22   78.9   0.0    1.0  1  FUR        Ferric uptake regulator family
     0.0033   17.3   0.2     0.0066   16.3   0.0    1.7  2  TrmB       Sugar-specific transcriptional regulator TrmB
  ------ inclusion threshold ------
      0.014   15.3   0.6      0.014   15.3   0.6    2.3  2  Nudix_N_2  Nudix N-terminal
      0.099   12.9   0.0       0.13   12.5   0.0    1.2  1  DUF2551    Protein of unknown function (DUF2551)


Domain annotation for each model (and alignments):
>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   7.4e-26   3.3e-22       2     118 ..      11     126 ..      10     128 .. 0.94

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 7.4e-26
                 TTHCHHHHHHHHHHHHHHHSSSBEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESSSSSEEEEEETTT--EEEE--HHHHHH CS
         FUR   2 aglklTkqRekilevlekseehlsaeevykelkeedpeislaTVYrtLklleeaglvkelefedgesryelakkehhdhlicekCgkviefkddeieki 100
                 +gl++T++R+++l+vl     hl+++e++++++e+ +++s   VY +L  l++agl +++e +++ +rye +++++h+h++c+ Cg++ +++    ek 
  KIR65007.1  11 RGLRVTRPRLAVLDVLS-AGGHLEVDEITRRVRERLDSVSTQAVYDVLGALSRAGLSRRIEPAGSPARYEARAGDNHHHVVCRGCGEIADIDCAVGEKP 108
                 79*************96.567***********************************************************************9999999 PP

                 HHHHHHHTT-EEEEEEEE CS
         FUR 101 qeeiaekegfklvshrle 118
                   +  +++gf++ + +++
  KIR65007.1 109 CLDPNTAHGFEVDEAEVT 126
                 999999999999988876 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.5e-06    0.0066      33      64 ..      47      80 ..      20      82 .. 0.77
   2 ?   -3.6   0.0       2.4   1.1e+04       4      13 ..     116     125 ..     115     125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.5e-06
                TSSCHCHHHHHHHHHHCTSEEEES..STTTEEEE CS
        TrmB 33 gvprskvYevLrsLedkGlVerek..grpklYra 64
                 v+ + vY+vL  L+++Gl +r++  g+p +Y+a
  KIR65007.1 47 SVSTQAVYDVLGALSRAGLSRRIEpaGSPARYEA 80
                48999******************96666****97 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.4
                 CHHHHHCCCH CS
        TrmB   4 lGLseyEakv 13 
                 +G+   Ea+v
  KIR65007.1 116 HGFEVDEAEV 125
                 7999999986 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.6   3.1e-06     0.014       7      31 ..      73      97 ..      72      98 .. 0.95
   2 ?   -0.8   0.4      0.33   1.5e+03      25      29 ..     131     135 ..     130     136 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.1e-06
                --B-EEE--TT-SS-EEEETTTTEE CS
   Nudix_N_2  7 GtpvelripdgDnreRlvCpaCgti 31
                G+p +++  +gDn++  vC  Cg i
  KIR65007.1 73 GSPARYEARAGDNHHHVVCRGCGEI 97
                8999*******************98 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.33
                 ETTTT CS
   Nudix_N_2  25 CpaCg 29 
                 Cp C+
  KIR65007.1 131 CPTCQ 135
                 88886 PP

>> DUF2551  Protein of unknown function (DUF2551)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     3e-05      0.13      13      74 ..      19      79 ..      13      88 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-05
     DUF2551 13 RrevLklfleakkltveeiyeklkek.fdvsykgvasmvGliasrlGIlkvkkeskgeknvYs 74
                R +vL ++  +++l+v+ei ++++e+  +vs+++v  ++G + sr G+ +   e  g++ +Y+
  KIR65007.1 19 RLAVLDVLSAGGHLEVDEITRRVRERlDSVSTQAVYDVLGAL-SRAGLSRR-IEPAGSPARYE 79
                889***********************778***********97.68886544.45566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.50
# Mc/sec: 852.90
//
Query:       KIR65008.1  [L=116]
Description: hypothetical protein TK50_05610 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 873.12
//
Query:       KIR65009.1  [L=61]
Description: hypothetical protein TK50_05615 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       154  (0.00858944); expected 358.6 (0.02)
Passed bias filter:                      133  (0.00741815); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.38
# Mc/sec: 481.39
//
Query:       KIR65010.1  [L=171]
Description: flagellar basal body P-ring biosynthesis protein FlgA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.007   16.4   0.3      0.015   15.4   0.3    1.6  1  RcpC      Flp pilus assembly protein RcpC/CpaB


Domain annotation for each model (and alignments):
>> RcpC  Flp pilus assembly protein RcpC/CpaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   8.2e-07     0.015       8      67 ..      81     134 ..      76     170 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.2e-07
        RcpC   8 ppgkrAvaievdevtgvaglirpGdrVDVlltesekedsesektvaelllqnvrVLavgq 67 
                 p+g + v i+  ++ ++  ++rpG rVD+l++     ++++++  a+ll  ++ VL+v  
  KIR65010.1  81 PDGAVGVPIRL-AEPAALAVVRPGARVDLLAV-----PAGRQAGDADLLAPRALVLDVVG 134
                 55555555555.56666779************.....77888888899999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      160  (0.00892409); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.29s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1166.24
//
Query:       KIR65011.1  [L=75]
Description: hypothetical protein TK50_05625 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      142  (0.00792013); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 621.86
//
Query:       KIR65012.1  [L=333]
Description: UTP--glucose-1-phosphate uridylyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-22   78.2   0.0    9.3e-22   77.8   0.0    1.1  1  NTP_transferase  Nucleotidyl transferase
    4.4e-08   33.6   0.8    1.1e-07   32.4   0.8    1.9  2  NTP_transf_3     MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0     1e-25   9.3e-22       1     239 [.      21     284 ..      21     292 .. 0.88

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 1e-25
                      EEEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGT.....................S CS
  NTP_transferase   1 kavILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfg.....................v 73 
                      kavI a G  tR+ P t++++k l+pv++  +++q+ ++++ ++gi ++++++  + ++++ +++ +  +++                      
       KIR65012.1  21 KAVIPAAGLATRFLPATKAVPKELLPVVDR-PVLQYIVEEATQAGIGDVLLITG-RGKTSMVDHFDRRPDLEarleskgdaerlaavrrpselA 112
                      699***************************.*****************666655.667777789999999999999****99999999999988 PP

                      EEEEEEESS--BGGHHHHHTHHHHTTSSE..EEEEETTEEEEST..THHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEEC..........T CS
  NTP_transferase  74 evlialepegkgtAdAvalaaelledeksdelvlvLggDhlikd..ayeeavkkaiekaakgtvtfgivpveeateyGviead..........e 155
                      e+    +pe+ g+ +Av  a+  ++d+     + vL gD ++k    +  a+ + +++   + ++f+ v+ +e ++yG++ ++          e
       KIR65012.1 113 EIYTCRQPEQLGLGHAVGYAESHVGDQP----FAVLLGDEFVKPsePLLPAMLELQARTGGIVLAFFEVDPAETKRYGIASVEaaepeltdigE 202
                      88899999999**************999....799999999998786666666666666658999*****************987777665544 PP

                      TSBEEEEECS-SSHSH.CSEECCSEEEEETTHHHHHHHCCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE-EEEXSSHHHHH CS
  NTP_transferase 156 egrverfvEKPkeaka.selassGiYvfnsevllflakdleelkrgedeitdilpkaleegkvalaflfkdaeyWsDvGtldsll 239
                        +v+ +vEKPk ++a s+la+ G Yv    +++ + +  e+   ge ++td+++ +  eg +  a++ ++++   D+G +  +l
       KIR65012.1 203 VVKVTGMVEKPKPEDApSNLAVLGRYVLPGRIFDAI-RRTEPGSGGEIQLTDAMELLRTEGVPVHAIVYRGTR--YDTGMPLGYL 284
                      44**********999999******************.679*********************999999999976..8999776665 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.8   1.2e-11   1.1e-07       1     126 [.      22     178 ..      22     309 .. 0.75
   2 ?   -2.4   0.0      0.59   5.3e+03      46      83 ..     292     327 ..     281     331 .. 0.67

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.2e-11
                   EEEEEESS-TTT....TT.THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHC...HHHH.....................HHTTCT..S-EEE-T CS
  NTP_transf_3   1 aviLAGGrSsRm....gg.dKallplggkpllervldalraagvdevvvvggde...evla.....................alarlg..vrvvede 66 
                   avi A+G ++R+    +  +K llp+ ++p+l+++++ +++ag+++v++++g+     v +                     a++r+   +++ + +
    KIR65012.1  22 AVIPAAGLATRFlpatKAvPKELLPVVDRPVLQYIVEEATQAGIGDVLLITGRGktsMVDHfdrrpdlearleskgdaerlaAVRRPSelAEIYTCR 118
                   7899********7755227*******************************99942332222556666666666666666655555554556666666 PP

                   TS.S-SHHHHHHHHHHHH.SSSCEEEEETT.-TT--HHHHHHHHHCHHHHTSSEEEEESSSE CS
  NTP_transf_3  67 dp.gkgplaslaaalraaadadavlvlacD.mPlltpelverllaaaaasgadvvvptyege 126
                   +p + g ++++  a +++ ++++++vl++D  +  ++ l+ ++l+  a + + +v + +e +
    KIR65012.1 119 QPeQLGLGHAVGYAESHV-GDQPFAVLLGDeFVKPSEPLLPAMLELQA-RTGGIVLAFFEVD 178
                   662589999999999999.9**********444466667888887644.5555666666554 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.59
                   CSHCHHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHHHH CS
  NTP_transf_3  46 ggdeevlaalarlgvrvvededpgkgplaslaaalraa 83 
                   +++e++ a++++  +++v++   ++   ++++ ++r+a
    KIR65012.1 292 CEREDLGAEFRKWLAEFVNNG--DETVTEAILNGMREA 327
                   555666677777777777776..466777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2211.43
//
Query:       KIR65013.1  [L=437]
Description: molybdenum cofactor biosynthesis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-34  117.5   3.2    4.7e-34  117.4   0.7    2.0  2  MoeA_N         MoeA N-terminal region (domain I and II)
      3e-23   82.1   0.2    5.2e-23   81.3   0.2    1.3  1  MoCF_biosynth  Probable molybdopterin binding domain
    2.9e-11   43.4   0.0    8.3e-11   41.9   0.0    1.9  1  MoeA_C         MoeA C-terminal region (domain IV)
  ------ inclusion threshold ------
      0.083   13.1   0.0       0.54   10.4   0.0    2.1  2  DUF3426        Protein of unknown function (DUF3426)


Domain annotation for each model (and alignments):
>> MoeA_N  MoeA N-terminal region (domain I and II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   0.7     1e-37   4.7e-34       6     157 .]      20     192 ..       9     192 .. 0.86
   2 ?   -0.4   0.1       0.2   8.8e+02     119     154 ..     207     244 ..     197     245 .. 0.80

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 1e-37
                 HHHHHHHH-.HH-EEEEEGGCG-TT-BBSS-EE-SS-BSSS-EESSSEEEEEEBTTB--................................-S---TT- CS
      MoeA_N   6 alaiilaal.eleeeevplaaealgrvlaedvvApedvPpfdnSamDGYAvraeagsgaseeep.....................saageeperllpgg 82 
                  l  +l++l  l++  ++l ++a+g vlaedvvAp+++P+fd++a+DGYA r+++ sga +                          a+++++  l++g
  KIR65013.1  20 YLGSVLRRLrALPPLDLDL-TQAYGNVLAEDVVAPHSYPAFDQAAVDGYAARWDDLSGAGRAAGgyagrsgpsgsrtvrlnvvgdLGAASWRPVRLTPG 117
                 5555666663444444888.99*****************************9999999988888999999999999999*****977777777777777 PP

                 .EEEE-TTSB--TT--EEEEGGGE.E....EETTE.S--STTTTEE-TTSSB-TTSEEE-TTBB--CCCHHHHHHCT CS
      MoeA_N  83 .avrimTGaplPegadaVvpvEdteeeeaketvev.kavkpgenvrraGedikaGevllragtrltpaeigllasvG 157
                  ++ ++ GaplP  ad VvpvE+t+ +  ++ ve+ +++k+g  vrraGe++ aG++l+ragt ++pa +++ a+ G
  KIR65013.1 118 aCFSVAAGAPLPIAADVVVPVEWTD-QGMAA-VEIfRTPKRGYGVRRAGEELPAGTLLARAGTYVSPALVAVFAATG 192
                 7**********************94.33344.34469999999*******************************998 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.2
                 -STTTTEE-TTSSB-TTSEEE-TTBB--CC..CHHHHH CS
      MoeA_N 119 vkpgenvrraGedikaGevllragtrltpa..eiglla 154
                 v+ g+    +G   + G+v+ ++ + lt+a  e+g+la
  KIR65013.1 207 VATGDELVDVGRGSQPGQVVDANSHALTAAaaEVGALA 244
                 56677788889999999999999999999866788877 PP

>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.2   1.2e-26   5.2e-23       2     142 ..     206     347 ..     205     348 .. 0.92

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 1.2e-26
                    EEEE-HHHH.......TTSSGBHHHHHHHHHHHTTSEEEEEEEEE-SSHHHHHHHHHHHHHTSSEEEEESS-SSSTT--HHHHH.HHHHSEE-HHH CS
  MoCF_biosynth   2 vitvGdell.......sgkieDtngpllaellkelgvevskytvvpDdeeeikeallaaleeadviittGGtGptpdDvtpeal.aklfekelegf 89 
                    ++++Gdel+       +g+++D+n++ l ++ +e g+ +++++++ Dd+e ++  l+++  +ad+iittGGtG +p D+++++l ++ +++     
     KIR65013.1 206 IVATGDELVdvgrgsqPGQVVDANSHALTAAAAEVGALAYRVGICDDDPEGLRGLLEDQTLRADLIITTGGTGTGPGDMVRRILsRREGGR---AG 298
                    899*****************************************************7776777*********************5556665...89 PP

                    HHHHHHHHHHHCCTTSHGGGGGGE.EETTEEEEE-SSHHHHHHHHHHHHHGGH CS
  MoCF_biosynth  90 eeafrrvslkpgkpvgvapgailsravgktiigLPGspkavkealeeillpal 142
                    +++f  v+l pg+ +g++++    +a++ ++++LPG p+a+  ++e++ +pa+
     KIR65013.1 299 PVTFTEVALYPGTALGFGTV----GAEEVPVVCLPGEPGAALIGFEVLARPAI 347
                    9**********999999999....344568*******************9987 PP

>> MoeA_C  MoeA C-terminal region (domain IV)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   1.9e-14   8.3e-11       2      72 .]     363     433 ..     362     433 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 1.9e-14
                 EEESS-EE--SSS-EEEEEEEE.S-S-EEEEEE-S---TT-GGGCTT--EEEEE-TT--EE-TT-EEEEEE- CS
      MoeA_C   2 arlaedlksdpgrreflRvilt.eedgeyvaeptgkqgSglLsslaeAnglivipegtegleaGeeVevill 72 
                 a l e ++s++g ref ++ +    +g+y+++p+  +g   Ls laeAngl+v+ e+++ ++aG +V+v+ll
  KIR65013.1 363 AHLLETITSPGGLREFRPAHVAeRRGGGYTVQPL-PGGKFTLSGLAEANGLMVLGERVTTAAAGSTVDVLLL 433
                 78999*****************9999********.9999******************************997 PP

>> DUF3426  Protein of unknown function (DUF3426)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00012      0.54      80     116 ..      27      63 ..      24      71 .. 0.82
   2 ?   -0.6   0.0      0.31   1.4e+03      32      74 ..     366     407 ..     346     411 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
     DUF3426  80 kpqalpaleltLtDaqgqvvarrvlspaeyllanqaa 116
                 + +alp l l+Lt a g+v+a+ v++p  y + +qaa
  KIR65013.1  27 RLRALPPLDLDLTQAYGNVLAEDVVAPHSYPAFDQAA 63 
                 5699**************************4444444 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.31
     DUF3426  32 leeacaplgcelppprdielisiessslrekageanlvlegtl 74 
                 le++ +p g +   p+++++++  ++++++ +g + + l+g +
  KIR65013.1 366 LETITSPGGLREFRPAHVAERRGGGYTVQPLPGGK-FTLSGLA 407
                 46666777777778889999999999999999999.9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2775.08
//
Query:       KIR65014.1  [L=263]
Description: hypothetical protein TK50_05655 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.029   14.0   1.7       0.04   13.6   1.7    1.1  1  Glyco_hydro_46  Glycosyl hydrolase family 46
       0.91    9.3   4.2       0.27   11.0   1.0    1.8  2  FA_desaturase   Fatty acid desaturase


Domain annotation for each model (and alignments):
>> Glyco_hydro_46  Glycosyl hydrolase family 46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.7   4.4e-06      0.04     146     209 ..     164     228 ..     155     229 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.4e-06
  Glyco_hydro_46 146 eirkrakkkaktpakggdekkyLea.fldaRkkalkeeeahedtsrvdtaqrkflkegnldLktp 209
                     ++rkra+++ + + + + e+++L+a   ++R+++ ++++a ++ +r  +aqr+ +++  + L++p
      KIR65014.1 164 HLRKRALAERRRRRAHAREAAWLAArQAEVRREQARRAAARREAQRRLAAQREAVRRTAMGLDRP 228
                     689********************8726899***99999999888888899**********99998 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.67     6e+03     114     114 ..      20      20 ..       5      52 .. 0.49
   2 ?   11.0   1.0     3e-05      0.27     103     186 ..      99     165 ..      63     188 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.67
  FA_desaturase 114 l 114
                    +
     KIR65014.1  20 P 20 
                    1 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 3e-05
  FA_desaturase 103 llvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllfllalvlnyveHy 186
                    + +++          +rr a rr+p + + +++r ++++llll+++ l++++++ +g    +w+   +++  l++    yv H 
     KIR65014.1  99 PPAAK---------SRRRAAPRRRPHTPAIYRRRRVLAALLLLNVVELIGVAVVGPG----FWIGSSVTATLLVT----YVVHL 165
                    33333.........5555555555555555555555666666667888888888887....9**99999988765....55554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1354  (0.0755201); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 1958.12
//
Query:       KIR65015.1  [L=287]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-20   72.3   1.3    1.5e-19   70.6   0.3    2.0  2  Abhydrolase_1  alpha/beta hydrolase fold
    2.1e-13   51.4  16.3    2.6e-13   51.1  16.3    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    1.5e-05   24.4   0.4    2.1e-05   23.9   0.4    1.2  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.037   13.7   0.0      0.058   13.0   0.0    1.3  1  Esterase       Putative esterase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.3   3.4e-23   1.5e-19       2     113 ..      26     134 ..      25     150 .. 0.92
   2 ?    0.5   0.0     0.089     4e+02     213     255 ..     231     272 ..     179     274 .. 0.69

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 3.4e-23
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyper 97 
                    ++v+lhG+p ++ +w+   +a  La  +++vi++DlrG+g S+++ +  +d+y+  ++ +d+ ++  alg d+++l Gh+ G ++a    +++pe+
     KIR65015.1  26 PIVLLHGFPQTHLMWRH--VAAELAV-EHTVICPDLRGYGASDKPAEDGPDTYSKRTMGADVVAVAKALGHDRFALAGHDRGALVAIRTGLDHPEH 118
                    89***************..*******.********************999********************************************** PP

                    EEEEEEESECSSCCHH CS
  Abhydrolase_1  98 Vkalvllgaidpaasl 113
                    V +l++l+ +++  ++
     KIR65015.1 119 VTHLASLDVLPTLDMW 134
                    *******994444444 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.089
                    EEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 213 ptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafle 255
                    p+ v++ +   +   +a   ++++ p+ +++v +++gH+   e
     KIR65015.1 231 PVTVLQQDWGSMLGFDAAGLWKAWAPD-LHHVPVTCGHFMAEE 272
                    555554433344444666677777888.888888888887665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1  16.3   5.8e-17   2.6e-13       1     219 [.      27     279 ..      27     280 .. 0.54

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 5.8e-17
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-....GGCS--HHH...CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC... CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrs....dpppldled...ladlaalldelaagggpvvlvGHSlGGalalaaapla... 86 
                    ++llHG++ ++ +W+  ++aa la  ++v++pDl+G+G s    ++ p++++     ad++a++ +l  g++++ l GH+ G+++a +        
     KIR65015.1  27 IVLLHGFPQTHLMWR--HVAAELAVEHTVICPDLRGYGASdkpaEDGPDTYSKrtmGADVVAVAKAL--GHDRFALAGHDRGALVAIR---TGldh 115
                    8*************8..998888999899*********55233355557776633336667777777..58888**************...44433 PP

                    ...EE..EEES-..----TTT...............S----TTHHHHHHTT-C..........CCCHCCHS-HSCCCCHHH.C..CCCHCHCCCGH CS
  Abhydrolase_6  87 .lvvg..vlldppptalpagl...............laaalelllallallrl..........lawlsreplprlfladed.a..daawrarlarl 151
                      +v+    ld  pt + + +               +a ++ l+++ +a              + w +   +p+ + ad+  a  daa +a  + +
     KIR65015.1 116 pEHVThlASLDVLPTLDMW-NvmhgvsaqvgfhlylMAQPPGLPEKMIA---GasddffghflDLWTN---DPQAIPADVRrAylDAARAAIGSIV 204
                    4333333444443311111.12333222111111212222222221111...0121222222233332...2223333222101124444444444 PP

                    HHHCCHHC......HTTCCHHTT-TTGCEEECTT-C......HHHHCHHCCCHSTTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 152 aallaglg......llpaaawadlpvpllvlggeDp......lvprllerllaqagarlpvvlpgaGHlphleepdevae 219
                    a+++a+ g      +  ++a ++l++p+ vl  +D         + l+++++  +  ++pv+   +GH++ +e+p  va+
     KIR65015.1 205 ADYRASAGidiehdQADRDAGRTLTMPVTVL-QQDWgsmlgfDAAGLWKAWAP-DLHHVPVT---CGHFMAEEAPGLVAR 279
                    4555544443433333466666666666564.777777566555566777777.77777766...*******999*9997 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.4   4.8e-09   2.1e-05       7     104 ..      27     122 ..      24     141 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 4.8e-09
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse..gkrg.hvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkv 101
                  +vl+HG+ ++     ++a++La +   v++ D rG+G s+   + g +  s  ++ +D+ a+ +++     + ++ l Gh  G+l+a++ +l++p++v
   KIR65015.1  27 IVLLHGFPQTHLMWRHVAAELAVE-HTVICPDLRGYGASDkpAEDGpDTYSKRTMGADVVAVAKALG----HDRFALAGHDRGALVAIRTGLDHPEHV 119
                  89*******************976.78*************984555455666778888887765555....66799********************99 PP

  Hydrolase_4 102 agl 104
                  + l
   KIR65015.1 120 THL 122
                  865 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.3e-05     0.058     117     159 ..      96     136 ..      82     175 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
                 EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CCHCHHHC CS
    Esterase 117 ravaGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWgq 159
                  a+aG+  G+l+A+ ++l+hp++ ++ +s+   v p+  mW  
  KIR65015.1  96 FALAGHDRGALVAIRTGLDHPEHVTHLASLD--VLPTLDMWNV 136
                 79****************************9..8899999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1858.99
//
Query:       KIR65016.1  [L=651]
Description: SARP family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      7e-39  133.6  13.1      7e-39  133.6  13.1    3.7  4  BTAD         Bacterial transcriptional activator domain
    9.1e-08   32.1   0.0    1.8e-07   31.1   0.0    1.6  1  Trans_reg_C  Transcriptional regulatory protein, C terminal
     0.0074   16.3   2.4      0.088   13.0   0.7    3.5  2  TPR_2        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6  13.1   1.2e-42     7e-39       1     146 []     107     248 ..     107     248 .. 0.96
   2 ?   -3.1   0.3       1.6   9.7e+03      41      43 ..     279     281 ..     258     321 .. 0.49
   3 ?   -1.9   0.3      0.68     4e+03      21      40 ..     504     522 ..     491     531 .. 0.60
   4 ?   -0.6   3.0      0.27   1.6e+03      12      51 ..     600     639 ..     592     648 .. 0.77

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 1.2e-42
                 BHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHH CS
        BTAD   1 vDlarfealvaagraalaagdpeeaaelleaAlalwrGpaladleagewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlh 99 
                 vD++rfe++v+++ +     d ++a+ +l++Ala wrGpa+ad+++  w++a r rl elrl+a+e +a+a+l lGra+ea+++l+++v +hP+rE+ +
  KIR65016.1 107 VDAWRFERAVTDAGTM----DAAAALVRLDEALAWWRGPAYADFPDAAWARADRSRLAELRLQAVEGRAQARLDLGRAAEAVPDLDEHVIAHPWREQGW 201
                 8********7777665....55799************************************************************************** PP

                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHH CS
        BTAD 100 rqlmrAlarsGrqaeALevYerlrrlLaeeLgvepgpelralheeil 146
                 r+l +Al+rsGrq++AL+v +r+r+lLa  Lgvepgp+lr+l+ +il
  KIR65016.1 202 RLLALALYRSGRQGDALAVLRRARELLAGHLGVEPGPALRELETDIL 248
                 ********************************************997 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.6
                 TGG CS
        BTAD  41 lad 43 
                  ++
  KIR65016.1 279 AGG 281
                 333 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.68
                 -HHHHHHHHHHHHTT--SST CS
        BTAD  21 dpeeaaelleaAlalwrGpa 40 
                 d++e+a  + +A al+rG a
  KIR65016.1 504 DVAERAP-VARAEALYRGAA 522
                 3334433.455666666665 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.27
                 HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHH CS
        BTAD  12 agraalaagdpeeaaelleaAlalwrGpaladleagewle 51 
                 a++aa+ + +  +a+++l  A+ +w+G   + l+ g+ + 
  KIR65016.1 600 AATAAADRAAMVRARRALAPAAVEWAGASSGALTVGPVAD 639
                 45556666688899999**********9999999866654 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   3.1e-11   1.8e-07       7      77 .]      28     100 ..      21     100 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 3.1e-11
                  SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTT..TTSSSSEEEETTTEEEE CS
  Trans_reg_C   7 tpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLedd..ekkprlIetvrgvGYrl 77 
                   p  +++L+ Ll  ++rvv+  +L++ +w   +d++ ++v++ ++ LR+ +e+d  +++p  +  ++g GY l
   KIR65016.1  28 GPMHRAVLARLLVARRRVVPVSDLVDDLWVSPPDGAVSAVRTFVAALRRAVEPDrpPRAPASLLVTQGLGYAL 100
                  577889************************************************9999*************86 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.18   1.1e+03       7      24 ..     170     187 ..     166     189 .. 0.82
   2 !   13.0   0.7   1.5e-05     0.088       3      30 ..     200     227 ..     198     231 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.18
       TPR_2   7 lGlayyklgdyeeAleaf 24 
                 +++a + lg+ +eA+ ++
  KIR65016.1 170 RAQARLDLGRAAEAVPDL 187
                 799999999999998766 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.5e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                 ++  l+la+y++g+  +Al+ +++A el
  KIR65016.1 200 GWRLLALALYRSGRQGDALAVLRRAREL 227
                 799**********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 4373.63
//
Query:       KIR65017.1  [L=179]
Description: hypothetical protein TK50_05680 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1267.04
//
Query:       KIR65018.1  [L=301]
Description: hypothetical protein TK50_05685 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2087.37
//
Query:       KIR65019.1  [L=252]
Description: methyltransferase type 11 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-23   80.6   0.0    1.7e-22   79.9   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
      7e-18   65.1   0.0    1.4e-17   64.1   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    3.7e-17   62.7   0.0      5e-17   62.2   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    1.5e-09   38.5   0.0    2.8e-09   37.6   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    1.9e-09   37.2   0.0    3.3e-09   36.4   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    6.1e-09   35.8   0.0    8.6e-09   35.4   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
     0.0046   16.3   0.0      0.006   15.9   0.0    1.1  1  Methyltransf_2   O-methyltransferase domain
  ------ inclusion threshold ------
       0.21   11.1   0.0       0.29   10.6   0.0    1.2  1  Methyltransf_PK  AdoMet dependent proline di-methyltransferas


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   7.4e-26   1.7e-22       1      95 [.      45     137 ..      45     138 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 7.4e-26
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                      LdvG+GtGr++ ala++++ v+g++++ +m+++a+++ + ++  v+++ ++ae+lp++d+s D  +++ ++hhv+d  +a +e+aR L+pgG+l
       KIR65019.1  45 LDVGSGTGRFTPALAHAFGPVTGIEPAVRMREVAQAQPPHPD--VRYLAGSAEDLPVPDGSADYALMFLSWHHVQDKPRAARELARALRPGGRL 136
                      8**************999****************88888877..9************************************************9 PP

                      E CS
  Methyltransf_11  95 v 95 
                      +
       KIR65019.1 137 L 137
                      7 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   6.3e-21   1.4e-17       2      97 .]      45     134 ..      45     134 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 6.3e-21
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkp 95 
                      Ld+G GtGr+t ala+++  + vtg++++ +m e a+++    +++v+++ g+aedlp +dgs D+ +++ ++hh++  d ++a +e+ar+L+p
       KIR65019.1  45 LDVGSGTGRFTPALAHAF--GPVTGIEPAVRMREVAQAQP--PHPDVRYLAGSAEDLPVPDGSADYALMFLSWHHVQ--DKPRAARELARALRP 132
                      8****************9..8****************999..568************************87799987..7889*********** PP

                      EE CS
  Methyltransf_25  96 gG 97 
                      gG
       KIR65019.1 133 GG 134
                      *9 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   2.3e-20     5e-17       4     162 ..      23     183 ..      10     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 2.3e-20
  Methyltransf_23   4 qreeelsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.....kakkaqkdqfdeq........eaaepqgkfd 84 
                      q+ +++  + + +lp +r++   Ld+G GtG++++ l+  +  vtg+++  ++ e a+                          + ++p+g+ d
       KIR65019.1  23 QQSRAWLSAFAAALP-QRRPLVGLDVGSGTGRFTPALAHAFGPVTGIEPAVRMREVAQaqpphP--------D--VrylagsaeDLPVPDGSAD 105
                      555777777777776.89999****************99999*******999999875444321........2..0123333337778****** PP

  Methyltransf_23  85 lIvlrevlehvpdppellrqiatllkpgGylllseplaslk.edrllldwlylvpagrhisffsarslkelleeaGlev 162
                      ++ ++ + +hv+d p++ r +a+ l+pgG+lll+   ++++ e  +l++ +    a ++ +f+  +++  ++ +aG++v
       KIR65019.1 106 YALMFLSWHHVQDKPRAARELARALRPGGRLLLRGNFSDHHpEPWWLDHFPRGLAA-DLAQFQPLHEVVAMFTAAGWRV 183
                      ***********************************888887466667776655545.999***************9987 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   1.2e-12   2.8e-09       1      99 []      45     136 ..      45     136 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1.2e-12
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+GtG+++ al+ +  +  +tg+++  ++ e a+++  +    ++  +   a+dl   dg  s D+ +++   hh++d+ ++ ++++++L+
       KIR65019.1  45 LDVGSGTGRFTPALAHA--FGPVTGIEPAVRMREVAQAQPPHP---DVRYLAGSAEDLPVPDG--SADYALMFLSWHHVQDKPRAARELARALR 131
                      8****************..**************4444443333...35566666666665555..***************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgGrl
       KIR65019.1 132 PGGRL 136
                      ***97 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   1.5e-12   3.3e-09      30     150 ..      23     137 ..      12     147 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.5e-12
                      TTHHHHHHHHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEE CS
  Ubie_methyltran  30 gihrlWkkfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvs 123
                      ++ r W +       ++r+   lDv +Gtg ++ +l+++    g v++++    m +v++++       ++++l ++ae+Lp  d+s D+  + 
       KIR65019.1  23 QQSRAWLSAFAAALPQRRPLVGLDVGSGTGRFTPALAHAF---GPVTGIEPAVRMREVAQAQP---PHPDVRYLAGSAEDLPVPDGSADYALMF 110
                      67889999888888999*****************998876...56889999999999998764...5679************************ PP

                      S-GGG-S-HHHHHHHHHHHEEEEEEEE CS
  Ubie_methyltran 124 fGlrnvtDklkaLkeayrvlkpGGrlv 150
                           v Dk++a +e+ r l+pGGrl+
       KIR65019.1 111 LSWHHVQDKPRAARELARALRPGGRLL 137
                      *************************97 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   3.8e-12   8.6e-09       8     110 ..      45     139 ..      39     184 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 3.8e-12
  Methyltransf_31   8 lDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeiervl 101
                      lD+G+GtG++t +la+  gp   v+Gi+   ++ e+A++   +     v+  +g++e+l+  + d + D+ l +   +++ d++ + +e+ r+l
       KIR65019.1  45 LDVGSGTGRFTPALAHAFGP---VTGIEPAVRMREVAQA---QPPHPDVRYLAGSAEDLP--VPDGSADYALMFLSWHHVQDKPRAARELARAL 130
                      9**************99998...******9999999988...344447************..************999***************** PP

  Methyltransf_31 102 kpggillie 110
                      +pgg+ll++
       KIR65019.1 131 RPGGRLLLR 139
                      ******975 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.7e-06     0.006      67     166 ..      45     140 ..       6     150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.7e-06
                     EEET-TTSHHHHHHHHH-TT-EEE..EEE-HHHHHHHHHHS-----TTEEEEES-TTTS---..--SEEEEESSGGGS-HHHHHHHHHHHHHH-- CS
  Methyltransf_2  67 vDvGGGtGalakaivsayPtikvi..vfDlpeVveaAkehlsageeervefvgGdffkdslP..eaDaillkrvlhDwsdekcvklLkrvkkalp 157
                     +DvG GtG +  a ++a+  +++i     + eV++a + h      ++v++ +G+  + ++P  +aD  l+    h  +d+   +  +++ +al+
      KIR65019.1  45 LDVGSGTGRFTPALAHAFGPVTGIepAVRMREVAQAQPPH------PDVRYLAGSAEDLPVPdgSADYALMFLSWHHVQDKP--RAARELARALR 131
                     5*****************9999983347789999999999......****************77788777776666666664..4568999**** PP

                     TT-EEEEEE CS
  Methyltransf_2 158 agGkvivve 166
                     +gG++++  
      KIR65019.1 132 PGGRLLLRG 140
                     ****99865 PP

>> Methyltransf_PK  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013      0.29      36     166 ..      23     145 ..      14     174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
  Methyltransf_PK  36 kgsrkflkklkkeslpgkrevkvaldcGaGiGrvtknlLlkllskvDlvepvekflekakeelaeekkkvgkvyvvg.lqef.tPe.egrYdli 126
                      + sr++l+ + +     +r+ +v ld+G+G Gr t  l  + ++ v  +ep  ++ e a+ +      +    y  g  ++  +P+ +  Y l+
       KIR65019.1  23 QQSRAWLSAFAAA--LPQRRPLVGLDVGSGTGRFTPAL-AHAFGPVTGIEPAVRMREVAQAQPP----HPDVRYLAGsAEDLpVPDgSADYALM 109
                      5688888888887..45788999************876.5678889999998888888873322....23333333303333255556678888 PP

  Methyltransf_PK 127 WiqWcvghLtDedlvaflkrckkalkpnGlivvkenvake 166
                      +  W   h+ D+  +a  +  ++al+p+G + ++ n + +
       KIR65019.1 110 FLSWH--HVQDKPRAA--RELARALRPGGRLLLRGNFSDH 145
                      88884..777776554..5566778888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1922.06
//
Query:       KIR65020.1  [L=266]
Description: hypothetical protein TK50_05695 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1884.65
//
Query:       KIR65021.1  [L=452]
Description: hypothetical protein TK50_05705 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-22   77.7   0.0    1.1e-21   77.2   0.0    1.2  1  UDPGT     UDP-glucoronosyl and UDP-glucosyl transferase


Domain annotation for each model (and alignments):
>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.0   6.1e-26   1.1e-21     276     413 ..     279     423 ..     209     427 .. 0.91

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 6.1e-26
       UDPGT 276 GvvvfSlGsmvseipeekanaiAsaLakip..qkvlWrfdg....kkPstLakntllvkWlP.qndlLgHPktkAFvtHaGangvyEaisnGvPmvglP 367
                  vv+  lG++++ ++  +++a A+aLa i+   +vlW++        P+ L +  ++ +W+P q d+L HP+++AFv H+Gang +E+++ G Pm + P
  KIR65021.1 279 SVVYACLGTLAR-LTGPQVRAFAEALAAIGpeHQVLWKLPAaqrhLLPGPLPPHVRIEEWIPsQLDVLAHPNVRAFVCHGGANGFHEGVHFGQPMLMTP 376
                 699******987.55666***********84468*****87655577***************899********************************** PP

       UDPGT 368 lFgdqrdNikrmeakgaavtlnvk.emtsedllnAlkevindksyke 413
                 ++ d  d ++r +  g +++l+   ++ + +++  l+ ++ ++s++e
  KIR65021.1 377 FWLDCYDIAARAVDAGVGLALDRPpHVDAGEVAAKLRRLLTEESFRE 423
                 ******************99997525667778888999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3272.23
//
Query:       KIR65022.1  [L=435]
Description: cytochrome P450 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-29  100.9   0.0    7.4e-19   67.8   0.0    3.0  3  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0   0.00068        12      87     153 ..     117     182 ..     109     189 .. 0.80
   2 !   24.9   0.0   4.3e-10   7.7e-06     214     299 ..     220     300 ..     204     302 .. 0.79
   3 !   67.8   0.0   4.1e-23   7.4e-19     327     433 ..     310     406 ..     308     415 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.00068
                 STTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHH CS
        p450  87 vlfangekwkklRrfltptltsfgklsleelveeeaedlveklrkkagesselditellskaaldvi 153
                 +l+ +++ +++ Rr++ + +t   ++ l++++e+ a+ l++ l ++a    +  i ++ s  +l+vi
  KIR65022.1 117 MLVVDPPAHTRYRRLVAKVFTPRAIEGLRPRIERHASALLDDLSPDAAGT-VEVIGRYASLLPLTVI 182
                 67789999*************99888*****************9988766.4445555555555555 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 4.3e-10
                 HHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHH CS
        p450 214 kklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqekl 299
                 +++++ l+  ++ + + l+ +     d+l+ l+  +  ++ge  l++eel a ++ ll+aG++Tt + l  ++++L+++P+  + l
  KIR65022.1 220 EAAIGQLNGWLRGHFARLRAD--PGDDLLSRLVHLD--SDGE-RLTEEELLALAGLLLVAGFETTVNLLGTGIHLLVRHPDQLASL 300
                 555555555666666666666..6678888888885..8887.*************************************977665 PP

  == domain 3  score: 67.8 bits;  conditional E-value: 4.1e-23
                 HHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHH CS
        p450 327 vikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklf 425
                 +++E+LR+ +++  ++ R++++d+++ g+ +++G +v++++++ +rdp+vf +P++Fd  R + +          +l F+ G++ C+G  lAr+e +l 
  KIR65022.1 310 AVEEILRYDSPAQ-TTARYCLTDTEVVGVRVRAGEVVVPMMGGANRDPAVFADPDRFDVTRANAR---------DHLSFSSGVHYCLGAALARLEGQLG 398
                 799**********.999*****************************************9995444.........58*********************** PP

                 HHHHHHHE CS
        p450 426 latlLqnF 433
                 la +++++
  KIR65022.1 399 LAAFFERY 406
                 ****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3197.20
//
Query:       KIR65023.1  [L=2452]
Description: peptide synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.7e-189  629.1   0.0     1e-102  343.9   0.0    2.2  2  AMP-binding    AMP-binding enzyme
    3.8e-91  306.1   0.0    6.1e-48  163.6   0.0    2.8  2  Condensation   Condensation domain
    5.2e-31  108.5   0.0    1.6e-29  103.7   0.0    2.2  2  Thioesterase   Thioesterase domain
    2.7e-28   98.1   0.1    6.2e-15   55.3   0.1    2.7  2  PP-binding     Phosphopantetheine attachment site
    1.1e-17   64.7   0.2    1.4e-08   35.6   0.0    3.2  2  AMP-binding_C  AMP-binding enzyme C-terminal domain
     0.0035   17.0   0.1     0.0066   16.1   0.1    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
       0.01   14.8   0.0      0.016   14.1   0.0    1.2  1  Tri3           15-O-acetyltransferase Tri3
       0.17   11.7   0.1       0.44   10.4   0.1    1.7  1  HTH_8          Bacterial regulatory protein, Fis family


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.9   0.0  4.6e-106    1e-102       1     423 []     478     884 ..     478     884 .. 0.89
   2 !  283.2   0.0   1.2e-87   2.7e-84       2     423 .]    1565    1975 ..    1564    1975 .. 0.86

  Alignments for each domain:
  == domain 1  score: 343.9 bits;  conditional E-value: 4.6e-106
                  HHHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEE CS
  AMP-binding   1 leeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvl 98 
                  ++++aa+tpd++alv +g+++t++Y++ld+r+n++A++L  +Gv++gdrVa+l++++p ++ a+l++lkaG+++v + p+ ++++l+++l+ds+a+vl
   KIR65023.1 478 FARRAARTPDRTALVVDGTDETVSYADLDARANQVAHALHDAGVGRGDRVAVLADRGPGLLTAILGTLKAGGAYVAIEPDHPQARLRHLLTDSGARVL 575
                  6899**********9999**********************99******************************************************** PP

                  EETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHC CS
  AMP-binding  99 iatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletr 196
                  +  v          +++ +++   v v +         lk++++++     p  ++ ++  dlay++YTSG+TG+PKGV ++hr++v+ +a++  ++r
   KIR65023.1 576 V--VT--------GDTPPPPVGPGVAVCH---------LKAMTDWPTT---P-VPPVADGADLAYVCYTSGSTGRPKGVLIEHRSVVNRLAWM--QRR 648
                  *..43........3334333444444444.........4444444422...3.4446899*****************************9996..556 PP

                  SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT-SEEEEESS CS
  AMP-binding 197 fklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sgalkaakkakdlsslrlvllgge 293
                    l+ ddv+++  p+++++++ +el+++ l+Ga++vl++++ ++dp++l +++++ +v+v++ vP++l  +l+   +  aa+   d  +lrlv++ ge
   KIR65023.1 649 YPLTGDDVLVQKTPVSFDVSV-WELFWWALAGARLVLPEPEVRRDPAALRRTVARQGVSVVHFVPSMLGPFLDlLADTPAAR--ADAAGLRLVFASGE 743
                  66889***************8.***********************************************9988544444444..49999********* PP

                  -EBHHHHHHHHHHHTC.....EEEEEEEEGGGSSECEE....CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-H CS
  AMP-binding 294 plspellrffralfge.....evlegYGlTEttgvvtv....lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkp 382
                   l+p  +++f++l++      +++++YG+TE+t+ v++    +++ +++++++ +G+p+ +++++++ +   ep p g +Gel+v g gv++gYl++p
   KIR65023.1 744 ELPPRHVDRFHRLLPAgppapRLVNLYGPTEATVDVSHyecrPDPAGRTARVP-IGRPIDNIQLYVLGPG-DEPQPVGAPGELCVAGIGVARGYLGQP 839
                  **************99****99**************77789866688888887.**************97.9************************** PP

                  HHHHHHEEE...T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 383 eataeafds...e.grwlrTGDlgrldedGyleivgRkkdliklr 423
                  e+ta++f       gr++rTGDl+r+ +dG++e++gR++d++k+r
   KIR65023.1 840 ELTAQRFGVdpvTgGRLYRTGDLARWLADGTIEYLGRLDDQVKIR 884
                  *******956663467***************************96 PP

  == domain 2  score: 283.2 bits;  conditional E-value: 1.2e-87
                   HHHHHHSTTSEEEEE......CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHH CS
  AMP-binding    2 eeqaaktpdkvalvd......sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayile 91  
                   +++a++tpd+va+++      +g  q++TY+ lde v+r+A gL+++Gv++g+ V+i+l++spe+++a+++i++aGa++vpl+ t++ae++a ++e
   KIR65023.1 1565 AAHARRTPDAVAITFdaeaasDGPPQRWTYARLDEMVDRIAVGLLRAGVRPGQLVGIALDRSPEMIAAIYGIARAGAACVPLDVTYPAERIAAMVE 1660
                   5789*********99******99**********************99************************************************* PP

                   HHTESEEEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHH CS
  AMP-binding   92 dseakvliatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvan 187 
                   ++++  ++  +       ++++++ + ++   +vld ++ll    + +e+         +  +++++ddl+y+++TSG+TG PKGV ++h++l + 
   KIR65023.1 1661 QARPARIV--T-------HRRHRGLVGDP--STVLDVADLLAGPAVTDEA---------VVLPRVTADDLLYVLFTSGSTGVPKGVAMTHGALDNY 1736
                   ********..5.......45556654444..5567876666553222222.........2445789**************************9554 PP

                   HHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGT CS
  AMP-binding  188 vaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdls 283 
                    ++++++   ++ ++ + l+++pl++++++  e+l+++++G+t+ ++++d ++d  +ll+l+++++v  i++++ +l++l+e+ +l         +
   KIR65023.1 1737 -QAWQIRA-ASAAAGGTTLQYAPLSFDVSF-QEILTTISAGGTLRIIDEDLRRDVPALLRLLDRESVARIFLPYVALQQLAEAAELL----G-IHP 1824
                   .4432332.334468899***********9.*******************999966788*********************9954444....2.334 PP

                   T.-SEEEEESS-EBHHH.HHHHHHHHTC..EEEEEEEEGGGSSECEE..CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETT CS
  AMP-binding  284 s.lrlvllggeplspel.lrffralfge..evlegYGlTEttgvvtv..lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpg 373 
                   + lr+v++ ge+l+ ++ +r+f a ++    + + YG+TEt  v+++    ++ ++++l+ +G+++ gve++++De  ++pvp+g++Gel+ +g +
   KIR65023.1 1825 RaLRVVISSGEQLRVTAeIRRFLAALPAgaVLENQYGPTETHLVTAYpmTGDPARWPNLPPIGPAIDGVEMHLLDER-MRPVPTGVTGELYYGGIQ 1919
                   55**********997653466777777778899************8888667899999*****************98.****************** PP

                   S-SEBTT-HHHHHHHEEE.....T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding  374 vmkgYlkkpeataeafds.....e.grwlrTGDlgrldedGyleivgRkkdliklr 423 
                   v++gY+++p +tae+ ++     +  r++rTGDl+r+ ++G l  v R++ + k+r
   KIR65023.1 1920 VTRGYHGRPGLTAERCVPnpfgpPgSRLYRTGDLARYLPNGDLIWVARTDTQTKIR 1975
                   ****************98899964456***********************998875 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.1   0.0   7.6e-44   1.7e-40       8     456 ..       2     457 ..       1     458 [. 0.88
   2 !  163.6   0.0   2.7e-51   6.1e-48       2     439 ..    1111    1535 ..    1110    1539 .. 0.88

  Alignments for each domain:
  == domain 1  score: 139.1 bits;  conditional E-value: 7.6e-44
                   XCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHHHHHHHH CS
  Condensation   8 spaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeeaieefaq 104
                   + +Q  +w++  l +e   +n+  +l+++g +dle++++ ++  + r+daLR++f+ ee+gep+Q++++e +v   ++++s  e+ +  +a  +++ 
    KIR65023.1   2 TTVQADIWVAGRLCPELPQFNVGGYLRFTGPVDLELMRTCMNRAVLRNDALRLRFE-EEDGEPYQWVEDEPPVI-ATIDFS--EDVDPRAACHSWMA 94 
                   789999*************************************************6.55**********99995.5*****..99999999****** PP

                   HHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHH.HTT-------S--HHHHHHHHHHHHCSHHHHHHHHHHHH CS
  Condensation 105 kdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqql.ekgeelplpqktpYkdyaeweqqyleskdlekeeaYWse 200
                   +   +pf L+++     al+  +e+  + +l+ HH+++DG+  ++ll++ ++ Y+ l + g   ++p++++Y   a ++++    +  e+++++ + 
    KIR65023.1  95 RSFDRPFPLRRSRMYELALLVESESVTYAYLNAHHLVTDGWGGRLLLQQASEDYARLlRAGAGAEEPPSSSYLAVARARAERPRPAPGERDREHYRA 191
                   ********************99********************************98625799999999999************************** PP

                   HHH......S---B........................SS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEE CS
  Condensation 201 qlegelpvlqLpkd........................karpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddiv 273
                    l+g +p + +p++                        + +   r +   r s+++d ++ +++     + g +  +v  ++l+ +L ++ ++d++v
    KIR65023.1 192 ALAGVAP-ALFPRRatggpagdspidsapagdsapagaSGPAGGRPATSGRHSFSIDRALVDRI----TARGESPFTVVASVLATYLARIHRTDRVV 283
                   ****766.558888*****999999888877766555444444555555666666666655555....577888899999999************** PP

                   EEEEEESSTTCSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HH..CCCE CS
  Condensation 274 vgteisgReseikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgq..esee 368
                    g++  +R        r+vG+F n lPl +++++a  +++l  +v+++l+    hqg   +eL + ++l+      +L d+ +s     +   e   
    KIR65023.1 284 LGVPLLNRRTH--VERRTVGHFANELPLPVRIDGARPLADLAAEVQTTLRALWAHQGLSRGELLRGVALPDG--GRQLYDVTLSWMR--WPrpEPVP 374
                   ********999..89*******************************************************96..666********44..54336666 PP

                   EECCCCSEEECEE...E.....SSEEEEEEE.TTSSEEEEEEEETTTS-HHH.HHHHHHHHHHHHHHHHHSTTSBCCC-----HHHHHHH CS
  Condensation 369 eesqlselklsvssveaeeeskydlslease.tngkltikieYntslFdeet.ierflerlkelleqviehpeqklselkllsdaekekL 456
                      q+++   +++           l++ + + ++g lt++++Y+ ++Fd  + ie + +++++ll ++++ p+ +l++  +l++ e++ L
    KIR65023.1 375 GVAQRTMVRSRLH-------DGHVLAVLVNDfDDGPLTVDLDYAPDVFDADFpIEALGRHVVTLLRNALDRPDRPLAQTPMLPKVERDRL 457
                   6666666666644.......3346777777778****************9976999*****************************99987 PP

  == domain 2  score: 163.6 bits;  conditional E-value: 2.7e-51
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseee 96  
                    qd  p + +Q +++f+    e+ +ay+  +   l+   d+ +++ a   l++rh+aLR +f      ep+Qv++   +  l v +++dl++ +++
    KIR65023.1 1111 QDAFPATRLQLGLLFHGSEREDATAYHDVFRYSLRLPWDEVAFRAAHARLLDRHPALRSSFDLGGCSEPLQVVHARVTGGLDVADLRDLDAATAD 1205
                    78899**********************************************************99*****************************9 PP

                    HHHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHH..TT-------S--HHHHHHHHHHHHCSH CS
  Condensation   97 eaieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqle..kgeelplpqktpYkdyaeweqqylesk 189 
                    + + + +++  ++ +  +++pL  + ++ + +  + l++s+HH+++DG+S+ +++ dl ++Y  l   + +++++   ++ + y+++e++   s 
    KIR65023.1 1206 AEVLAHMRQRRRHRYAFDRAPLHLMRVHLLPSGAVDLVFSFHHVLLDGWSVATVVGDLLRTYLRLVgvDIDPPRAAALPSPAAYVVEERRAVDS- 1299
                    99******************98777777777*******************************887522456666667777899****7775555. PP

                    HHHHHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTT. CS
  Condensation  190 dlekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRes. 283 
                        ++++W+ +l+g ++ +q+   ++  + ++ +     + l++++++++r +a+++g  +++vllaa +llL  y+g  d+ +g++++gR++ 
    KIR65023.1 1300 --VATRDFWRARLDG-AELTQIEGCRQYEPPGDEETIIRHVPLPDDLQDRVRGFAAAHGLPVKSVLLAAHCLLLRLYSGAADVTTGLVTHGRPDr 1391
                    ..599*********9.443445444333333333333556667***************************************************7 PP

                    CSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEE CS
  Condensation  284 eikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselkl 378 
                    +  + e + GlF+nt+Plr+++ +a t  el+++v  + ++  ph++ypl  +v d         +p+f++ f++  + +     + ++ + l++
    KIR65023.1 1392 P--GAELVAGLFLNTVPLRVTP-GARTWLELVRQVHGQERECHPHRRYPLHAIVGDRG------GEPVFETAFNYVHMHVLTPLLQLPEVELLGF 1477
                    7..*******************.9999**************************77654......579********77666688888899999888 PP

                    CEE...E.....SSEEEEEEE..TTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTT CS
  Condensation  379 svssveaeeeskydlslease..tngkltikieYntslFdeetierflerlkelleqviehpe 439 
                            ee+++ l ++++   ++++ +++++        ++ + +++ ++++l +++++p+
    KIR65023.1 1478 D-----TWEETNFTLLVNVFVspVDRRVSLRVDADGRTLTPAQTDLLIDAYLRILARIVADPQ 1535
                    8.....56799**999888877799*******9999999999999999999999999999997 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   0.0   6.9e-33   1.6e-29       2     104 ..    2175    2276 ..    2174    2320 .. 0.94
   2 ?    2.3   0.0     0.067   1.5e+02     184     217 ..    2391    2423 ..    2337    2436 .. 0.61

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 6.9e-33
                    EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTSTSHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEE CS
  Thioesterase    2 pLflfppagGsasvfrslasklsdpvvevlavqlpgrerdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavks 96  
                    pLfl++p gG++ ++  la++ls++   ++a+q++g + +++pl++  ela  y++a+r++qp+gPya++G+S+Gg +Afe+ArqL++ G  v +
    KIR65023.1 2175 PLFLVHPLGGNVLCYVPLARHLSPD-QPLYALQAAGVDAGTEPLRTVPELARAYLDAIRRVQPDGPYAIGGWSFGGVVAFEMARQLRESGAGVDR 2268
                    8***********************8.********************************************************************* PP

                    EEEESCCC CS
  Thioesterase   97 lflidssa 104 
                    l+l d  a
    KIR65023.1 2269 LILLDPIA 2276
                    ****9554 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.067
                    TCCCCCCCHCH..CHCTCESCEEEEEESSHCCHHHS CS
  Thioesterase  184 kdldtlelaer..weqktsgevsvhvlegdhfylle 217 
                    ++l +l+   r  w + t+g+v+v  ++gdh  l+ 
    KIR65023.1 2391 GTL-HLDP--RngWGELTTGRVDVIDVPGDHLVLMD 2423
                    222.2334..255*********************96 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   1.5e-13   3.4e-10       2      66 ..    1017    1078 ..    1016    1079 .. 0.95
   2 !   55.3   0.1   2.8e-18   6.2e-15       2      67 .]    2089    2152 ..    2088    2152 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1.5e-13
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaay 66  
                  +l +++a+vlgvp  +++ ++d f  G+DS+la+++ a+  ++ g+ ++++dl + pt+a+laa+
  KIR65023.1 1017 TLAAIWARVLGVP--SVGIHQDWFAVGGDSILALRVGAEAARH-GLHVTVADLVARPTVAALAAH 1078
                  799*********9..5679********************9999.*******************98 PP

  == domain 2  score: 55.3 bits;  conditional E-value: 2.8e-18
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   + +++a++l++p+  ++++++lf+lG+ Sl+a++l+++le++fgv++p+s + + pt+a +aa+l
  KIR65023.1 2089 VVADIAADLLHLPA--VGAHDNLFELGGTSLTAMRLVVMLEKRFGVAVPVSAFVATPTVAGVAALL 2152
                  6889*********6..669*******************************************9975 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   6.1e-12   1.4e-08       5      76 .]     896     965 ..     892     965 .. 0.93
   2 !   25.7   0.0   7.6e-09   1.7e-05       6      76 .]    1992    2061 ..    1984    2061 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 6.1e-12
                    HHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   5 alvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    al+++p+V+ea+Vv+ +d+ +G  lv+++  +++  + ++ L+a++ + l++y vp  ++ +d++p+t++GK
     KIR65023.1 896 ALAAVPGVREAVVVARTDPARGTHLVGYYRADAD--LDPAWLRAQLLHGLPDYLVPALFRRLDRIPLTAHGK 965
                    89****************************9544..346********************************9 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 7.6e-09
                     HHSSTTEEEEEEE-----TTS..---EEEEEE---.---HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C    6 lvshpaVaeaaVvGvpdevkG..ealvafVvlkdg.sealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                      ++ p+++eaaVv+ + e  G  ++l++f v +++ +    ++++ ++r++l+++ vp +   ++++p+t sGK
     KIR65023.1 1992 AAEYPGIREAAVVARRRE--GvdSYLAVFLVGDPDaV--DLADVRGRLRATLPEHLVPARWQWLPAMPLTPSGK 2061
                     5789*********99999..55599******643423..46********************************9 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1     3e-06    0.0066       1     107 [.    2174    2277 ..    2174    2303 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3e-06
                     SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_1    1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaey 94  
                     p+l ++h l+g+   +    la++L+  ++ +++l   Gv+ ++ ++++++   ++   +++ld+i+   +d++ ++ G+S+GG +a+++a + 
     KIR65023.1 2174 PPLFLVHPLGGNVLCYVP--LARHLSP-DQPLYALQAAGVDAGTEPLRTVP---EL--ARAYLDAIRRVQPDGPYAIGGWSFGGVVAFEMARQL 2259
                     799***************..******9.*******************9854...44..789999*****************************9 PP

                     ...GGGEEEEEEESE..C CS
  Abhydrolase_1   95 ...perVkalvllga..i 107 
                           V++l+ll++   
     KIR65023.1 2260 resGAGVDRLILLDPiaR 2277
                     888888999999999551 PP

>> Tri3  15-O-acetyltransferase Tri3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   7.3e-06     0.016     163     208 ..    1233    1278 ..    1224    1281 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.3e-06
        Tri3  163 eltastvvdvllhsnhlyfdGiskrlfvGdllrslaellgteqkpp 208 
                   l +s +vd+++   h+  dG s+   vGdllr+   l+g++ +pp
  KIR65023.1 1233 HLLPSGAVDLVFSFHHVLLDGWSVATVVGDLLRTYLRLVGVDIDPP 1278
                  5778999*********************************998887 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1    0.0002      0.44      22      36 ..    1814    1828 ..    1812    1829 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0002
                  HHHHHHHTS-HHHHH CS
       HTH_8   22 skAArlLGisRrtLy 36  
                  ++AA+lLGi++r L+
  KIR65023.1 1814 AEAAELLGIHPRALR 1828
                  89***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.11u 0.31s 00:00:01.42 Elapsed: 00:00:00.50
# Mc/sec: 14657.78
//
Query:       KIR65024.1  [L=310]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-40  136.9   0.0    7.5e-40  136.5   0.0    1.1  1  adh_short     short chain dehydrogenase
    4.5e-30  104.9   0.0    5.9e-30  104.6   0.0    1.2  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    2.5e-10   40.2   0.0    2.8e-08   33.5   0.0    2.0  2  DUF1776       Fungal family of unknown function (DUF1776)
    2.8e-06   27.3   0.0    4.8e-06   26.6   0.0    1.3  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   0.0   1.7e-43   7.5e-40       2     191 ..      14     201 ..      13     204 .. 0.93

  Alignments for each domain:
  == domain 1  score: 136.5 bits;  conditional E-value: 1.7e-43
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH..SSESEEEE---SS--SSGGGCSH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl..gkldvLvnNAGitgsgpfselse 98 
                 +v+vtGassG+Gr+ a +l + G++v++  r  +++  +a+     + +++++++Dvt +++++ + ++++ ++  g+l+ LvnNAGi+ +gp + +  
  KIR65024.1  14 AVVVTGASSGLGREAALHLERVGFRVFAGVRDRAAADDLAAAT---AGRLTPLRLDVTRADQIRGATDEVARQVgaGGLWGLVNNAGISLPGPLECVPP 109
                 79**************************777766665555554...467************************9999********************** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 e+ +r +++N++g + +++ +lp  l+  +GrIvnv+S  g+v+++ + aY+A+ +a ++ ++sl++el+p gi v++v+PG+++T++  ++ 
  KIR65024.1 110 EQLRRQLDTNVVGQVAVIQGFLPL-LRTGRGRIVNVTSGLGRVALPYLGAYAAAQFAKEAVSDSLRRELRPFGIAVSVVQPGAIQTPIWDKVV 201
                 ************************.679***********************************************************998875 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.0   1.3e-33   5.9e-30       1     185 [.      19     203 ..      19     243 .. 0.90

  Alignments for each domain:
  == domain 1  score: 104.6 bits;  conditional E-value: 1.3e-33
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHH..SSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekf..gklDilvnnagiapklkgpfletsre 93 
                   Ga sg+Gr++A +l + G +v +  ++++a   +++la+++  ++  l++DVt+ +q++ + +ev++++  g+l +lvnnagi+ +  gp++ ++ e
    KIR65024.1  19 GASSGLGREAALHLERVGFRVFAGVRDRAA---ADDLAAATAGRLtpLRLDVTRADQIRGATDEVARQVgaGGLWGLVNNAGISLP--GPLECVPPE 110
                   899******************999999998...67777776666447**********************999**************..********* PP

                   HHHHHHHHHTHHHHHHHHHHHHHCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTH CS
  adh_short_C2  94 efdraldvnlyslfllakaalplmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgf 185
                   +++r ld+n+ + +++++ +lpl++ g g+ivn++s  +++++p   ay+aa  a ea++ +l +el p gi v +v pg+i+T++++++ ++
    KIR65024.1 111 QLRRQLDTNVVGQVAVIQGFLPLLRTGrGRIVNVTSGLGRVALPYLGAYAAAQFAKEAVSDSLRRELRPFGIAVSVVQPGAIQTPIWDKVVDA 203
                   **********************999999**********************************************************9998752 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0     0.003        14       4      42 ..      13      50 ..      10      84 .. 0.76
   2 !   33.5   0.0   6.4e-12   2.8e-08     106     295 ..     102     282 ..      97     283 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.003
     DUF1776  4 dvvlvlGsptePltRsialDLerrGFiVfvtvesaeeek 42
                  v+v G +   l R  al Ler GF Vf  v++ + + 
  KIR65024.1 13 RAVVVTG-ASSGLGREAALHLERVGFRVFAGVRDRAAAD 50
                5677777.456799***************9999877655 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 6.4e-12
     DUF1776 106 gpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLGnldlan 204
                 gp+e +p+++++ +l ++++  ++++q++lpll+     + +i+ v+ ++   + lp+ +  a  + a +a   +L+relrp +i v+ ++ G ++   
  KIR65024.1 102 GPLECVPPEQLRRQLDTNVVGQVAVIQGFLPLLRT---GRGRIVNVTSGL-GRVALPYLGAYAAAQFAKEAVSDSLRRELRPFGIAVSVVQPGAIQTPI 196
                 9*********************************8...889998887665.7899*****************************************876 PP

     DUF1776 205 .gsqsnskiasvagsevlsWsesaralygpnyvsilskaisaksirrgsslreLhnalfdllegsskkrvvyvGkgarlyslvgkllpeglv 295
                  ++   +  +++a +        a +ly++ + + l+ +  a++ r g++   + +a+  +l+++++   + vG   rl sl ++llp  l+
  KIR65024.1 197 wDKVVDAGTETMARAA-----GRAGDLYAEPFGRFLA-RLAAQARRSGTTPADFARAVARALTAARPRTRYPVGADVRLGSLAARLLPDALL 282
                 7888888888888888.....8999**********99.578888889****************777777777****************9987 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.1e-09   4.8e-06       3     169 ..      15     179 ..      14     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.1e-09
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHS..S---EEEE---------TT CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaee..ppikGvihaAgvlrdklle 98 
                 +++tG+  gLG+e a +l + g r  + +  +    +      + l+a    + + +++Dv+ +d+++ + +e+ ++   + + G ++ Ag++  ++le
  KIR65024.1  15 VVVTGASSGLGREAALHLERVGFRVFAGVRDR----A----AADDLAAAtAGRLTPLRLDVTRADQIRGATDEVARQVgaGGLWGLVNNAGISLPGPLE 105
                 68********************9965544333....2....22334443145999*******************99988899***************** PP

                 T--HHHHHHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHT CS
          KR  99 emtaedleqvlapKvkGawnLhelled...esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglp 169
                  +  e+l++ l   v G   + + + +   +    +v ++S  g +  +  ++Yaaa    +a+ ++ r++  p
  KIR65024.1 106 CVPPEQLRRQLDTNVVGQVAVIQGFLPllrTGRGRIVNVTSGLGRVALPYLGAYAAAQFAKEAVSDSLRRELRP 179
                 *******************999988877766677899999*****************98888887776665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2184.28
//
Query:       KIR65025.1  [L=354]
Description: hypothetical protein TK50_05740 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-06   27.5   0.0    4.9e-06   26.9   0.0    1.2  1  DUF4352   Domain of unknown function (DUF4352)
  ------ inclusion threshold ------
      0.078   12.9   0.0       0.14   12.2   0.0    1.3  1  DUF1942   Domain of unknown function (DUF1942)
      0.085   12.7   0.1      0.085   12.7   0.1    1.4  2  VIT1      VIT family


Domain annotation for each model (and alignments):
>> DUF4352  Domain of unknown function (DUF4352)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   8.1e-10   4.9e-06       8     115 ..     238     343 ..     230     352 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 8.1e-10
                 CCTTEEEEEEEEEEEEEETTS-CEETT-.SEEEEEEEEEEE-SSS-EEEEGGGEEEEETTEEE-BEEESCCCCTTB..--EEEE-TT-EEEEEEEEEES CS
     DUF4352   8 kvgdlevtVnsveytksvgkneylqpdaggeflivdvtvkNkgkealtvnssqfkLkdgdgkeydadlsasskadd..lflgtlnpGkkvtGklvFdvp 104
                 ++g le+tV ++  t+++g ++y  + ++g +li+dvt +   k  +++n+  f+ + +dg++ +   +a     d  + + +l+ G+k tG+++Fdv 
  KIR65025.1 238 EDGTLEITVLRF-RTSTKGCKSYSPDPDKGLYLIADVTAT-VKKGNMSINPFYFQWVAEDGTTANGIAGALAGCGDllDSGVNLREGSKRTGSVTFDVT 334
                 5799********.6666677******************99.6688899****999999**99999777777777677777779***************9 PP

                 TT-CGEEEEE. CS
     DUF4352 105 kgkkkleLeyq 115
                        Ley+
  KIR65025.1 335 NKNG--ALEYR 343
                 8866..55554 PP

>> DUF1942  Domain of unknown function (DUF1942)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.3e-05      0.14       7     109 ..     230     337 ..     225     342 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.3e-05
                 T-EEEEEETTTTEEEEEEEEEEEE------.S--..-SEEE.EEEEEEEEEES-B---GGGEEEE-TT--EEEB--SSS-TTB.-..----B-TT-EEE CS
     DUF1942   7 GseaeltdagGavvqeytvsdLkpssdvip.yev..agklw.eatatveavsgtvtPivsnlnaraangetYrvlkevatpqg.i..npatlaqgekst 98 
                 G +  ++d  G++  e tv  +++s++    y++  +  l+  a++t++  +g++  +   ++  a++g+t + + +  +  g +  ++ +l +g+k t
  KIR65025.1 230 GDTLVINDEDGTL--EITVLRFRTSTKGCKsYSPdpDKGLYlIADVTATVKKGNMSINPFYFQWVAEDGTTANGIAGALAGCGdLldSGVNLREGSKRT 326
                 7777788888886..899999999998776665422345553799999999999888888999999***999999986554443323466899****** PP

                 EEEEEEE-SS- CS
     DUF1942  99 GklYFdvtGea 109
                 G + Fdvt ++
  KIR65025.1 327 GSVTFDVTNKN 337
                 *******9865 PP

>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.4e-05     0.085     144     197 ..     133     190 ..     131     193 .. 0.78
   2 ?   -4.8   0.9         3   1.8e+04      36      45 ..     300     309 ..     298     309 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
        VIT1 144 sfliGgliPllpylfve...svglalvvsiavtllalllfGavkalltgssk.lvsal 197
                 +++ G   Pl p + ++   +   +++v+++v+l+ l+++G++ al+tg++  +++a 
  KIR65025.1 133 GYAPGQGYPLGPPMGAKkssKKPIVIIVVVVVVLALLCCVGGIVALVTGANEaAKEAE 190
                 577778889999998886644666777777888888999***********99777765 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 3
        VIT1  36 aGlaellAGa 45 
                  G+a++lAG+
  KIR65025.1 300 NGIAGALAGC 309
                 5899999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 2243.61
//
Query:       KIR65026.1  [L=218]
Description: 4-phosphopantetheinyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-23   80.6   2.5    1.1e-22   79.9   2.5    1.4  1  4PPT_N    4'-phosphopantetheinyl transferase N-terminal domai
    5.7e-10   39.3   0.0    1.1e-09   38.4   0.0    1.4  1  ACPS      4'-phosphopantetheinyl transferase superfamily


Domain annotation for each model (and alignments):
>> 4PPT_N  4'-phosphopantetheinyl transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   2.5   1.3e-26   1.1e-22       6      68 .]      32      94 ..      26      94 .. 0.94

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 1.3e-26
      4PPT_N  6 irkavakRkaeFlaGRicAraalarlgleavpllsgerraPlwpaglvgSIsHtdglaaAava 68
                 ++av++R+++F+aGR+cAr+alarlg +av+++   +r+P+wp g+vg I+Ht g++aAa+a
  KIR65026.1 32 GERAVERRRRDFTAGRVCARRALARLGVPAVAVPAAPDRSPVWPPGVVGTITHTPGYCAAAAA 94
                489*********************************************************986 PP

>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   1.2e-13   1.1e-09       1      86 [.     101     177 ..     101     189 .. 0.90

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1.2e-13
                 EEEEEEEEHHHHH.HHH-----HHHHHS-HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTS-SSSS--GGG-EEEE-TTS-EE CS
        ACPS   1 gvGiDieklsrlrkrvkrrgakilkrifteeErkllkssdeearaelfarlWaaKEAllKalgpglrklldfksievledstgrpt 86 
                 +vG D e   r+r    + ++++++ +  +eE++ +++ ++ a+  +  +l++aKE ++K ++p ++++ldf++++v+ d+++   
  KIR65026.1 101 SVGMDAE---RHR----ELNPGVRRLVGLPEEWDDCARLPDTAP--WPVVLFSAKETVYKVWHPVVGTWLDFHDARVELDPDSGLF 177
                 69*****...777....4888999********************..*****************************99999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       184  (0.0102627); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1597.91
//
Query:       KIR65027.1  [L=261]
Description: peptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1989.95
//
Query:       KIR65028.1  [L=577]
Description: glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-25   90.0   4.5    1.7e-25   90.0   4.5    2.6  2  PMT       Dolichyl-phosphate-mannose-protein mannosyltransfer
    1.5e-21   76.9   1.1    1.5e-21   76.9   1.1    3.2  2  PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltra
    1.4e-05   25.3   5.8    1.4e-05   25.3   5.8    4.9  5  PMT_2     Dolichyl-phosphate-mannose-protein mannosyltransfer
  ------ inclusion threshold ------
        1.8    8.8   7.1         22    5.3   0.1    2.4  2  OCC1      OCC1 family


Domain annotation for each model (and alignments):
>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   4.5   3.9e-29   1.7e-25       3     198 ..      69     295 ..      67     305 .. 0.88
   2 ?   -4.0   0.7         2   8.9e+03     131     176 ..     423     466 ..     417     467 .. 0.66

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 3.9e-29
         PMT   3 ltllallirlwrlslpnsvvfdevhfgk.........fasdYlehsffmdvhpplgkmllalggyLagkdgnftfesigaeyypenvpyvslRlfsall 92 
                 + ++a++ rl  ls+p+  +fde ++ +          ++ Y ++     vhpplgk l++lg + +g+  +   +s  +   +  +p+++ R+  al+
  KIR65028.1  69 VVAIAAILRLVGLSYPKGKIFDEIYYARdgwglvdkgVEWNYKDNGPSYVVHPPLGKWLIGLGEWAFGYSDAEHNISVPGHLMTT-APEFGWRFGAALA 166
                 567899999999***********99976333333333678999**********************99997766666665455555.************* PP

         PMT  93 gslivplvyltllelgfskltallaallvllenslitlsryilldspLlfftllsmyclvkfe........................rkapfsrswwlw 167
                 g+++v+l++ + ++l +s + +  a ll++l+  +++lsr +lld++Ll+f l+++  lv                           r a ++r+w +w
  KIR65028.1 167 GIVSVLLLVRIGRRLFRSTTLGCAAGLLLALDGFHLVLSRTALLDIFLLLFVLAAFGALVLDRdarrrrwsraldagldptapgragRPAGGWRNWPWW 265
                 ********************************************************99998888999999***************999999******** PP

         PMT 168 llltgvalglavsvKwvglftvllvgllliw 198
                  l++gv lgla+ vKw +l+++ +++ ll+ 
  KIR65028.1 266 RLAAGVLLGLACAVKWSALYFL-PAFALLAL 295
                 *******************888.55554433 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2
         PMT 131 sryilldspLlfftllsmyclvkferkapfsrswwlwllltgvalg 176
                 s + ll  pLl +  l  ++   +      +r w++ ++l+ va g
  KIR65028.1 423 SEILLLGTPLLWWSFLPALFGAAWI--GLARRDWRAGAILLCVAAG 466
                 5566777777777766666555554..3467778888888777776 PP

>> PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.7      0.18   7.9e+02      61     116 ..     281     343 ..     262     348 .. 0.65
   2 !   76.9   1.1   3.4e-25   1.5e-21       3     197 ..     370     573 ..     369     576 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.18
    PMT_4TMC  61 wlstiallvfvllllalllrrqrgvkdl...........eeeetrllnsglflllgwalhylPfflm 116
                 w+++ +l +f+ll l+       gv+              +e  +l+ +g+++++++++ +  ++l 
  KIR65028.1 281 WSALYFLPAFALLALLWE----VGVRRSagvrrpwrdalLDELPWLVLAGVLMVVAYVATWSGWLLT 343
                 555555555554444222....222222222245666677777889999999999999999988876 PP

  == domain 2  score: 76.9 bits;  conditional E-value: 3.4e-25
    PMT_4TMC   3 kkflelqkamltsnnalteshpyaSepyeWplllrgisywtkneekkq........iyllGNpvlwwlstiallvfvllllalllrrqrgvkdleeeet 93 
                 ++++e++ka + ++++l ++h+y+S p++W+ll r++++  + e            i llG p+lww+ + al+   +   + l rr ++  +      
  KIR65028.1 370 NNLWEYHKAAYGFHKQLDDPHKYQSWPWQWLLLGRPVAFHWSGEGA-CgapscaseILLLGTPLLWWSFLPALF---GAAWIGLARRDWRAGA------ 458
                 789**************99********************8774332.235666666************999999...3332334444333332...... PP

    PMT_4TMC  94 rllnsglflllgwalhylPfflmgRvlflhhYlpAllfailllaalldfllkslkkslkkk.................klvklivvvvllvlviavFif 175
                      +l+++ + +l ++ f l gR++f +   pAl f +l++ ++l  +++  ++   +                  +lv+ ++v+++++lv+++F +
  KIR65028.1 459 -----ILLCVAAGLLPWFWFALDGRTMFSFYTAPALPFLVLAVVYVLGAIVTPATDGA-RApaakgasadgedevaerRLVGGVIVGAYVLLVALCFAY 551
                 .....3455555566666677789**************************95544444.33699*************999******************* PP

    PMT_4TMC 176 fspltyGlpgtseevkklkwls 197
                 f p+++G  ++ +e+++++wl+
  KIR65028.1 552 FYPIFVGKVLPYAEWSARMWLD 573
                 ********************96 PP

>> PMT_2  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       2.4   1.1e+04     101     112 ..      63      74 ..      57      82 .. 0.57
   2 !   25.3   5.8   3.2e-09   1.4e-05      20      91 ..     155     227 ..     119     243 .. 0.89
   3 !   14.0   6.7   9.8e-06     0.044      97     153 ..     261     331 ..     259     337 .. 0.68
   4 ?   -1.6   2.4      0.61   2.8e+03      12      92 ..     471     502 ..     427     513 .. 0.61
   5 ?   -3.8   0.2         3   1.3e+04     145     154 ..     544     553 ..     535     569 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.4
       PMT_2 101 wllagvlfGlgf 112
                 w++++v+++++ 
  KIR65028.1  63 WIATAVVVAIAA 74 
                 444444444443 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 3.2e-09
       PMT_2  20 selairlvsalagvltilllyllarrlfg.kraallaalllavvplfvalsalftpdaplvllwalalylllr 91 
                  e++ r+ +alag++++lll ++ rrlf  ++ + +a llla+  + ++ls++  +d++l+l++++a  +l+ 
  KIR65028.1 155 PEFGWRFGAALAGIVSVLLLVRIGRRLFRsTTLGCAAGLLLALDGFHLVLSRTALLDIFLLLFVLAAFGALVL 227
                 68999************************9999********************************99877665 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 9.8e-06
       PMT_2  97 klkyw.llagvlfGlgflsKytaallliaall.yllis............arrilkekkpylalllalllf 153
                 ++ +w l+agvl+Gl++ +K  a+++l+a++l +ll++            +r  l +  p+l+l+ +l+++
  KIR65028.1 261 NWPWWrLAAGVLLGLACAVKWSALYFLPAFALlALLWEvgvrrsagvrrpWRDALLDELPWLVLAGVLMVV 331
                 678999***********************7777****9985333332222222344455555555555555 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.61
       PMT_2  12 lftklfgfselairlvsalagvltilllyllarrlfgkraallaalllavvplfvalsalftp.daplvllwalalylllra 92 
                 ++++l g +                                                  +f    ap +++++la+ ++l a
  KIR65028.1 471 FWFALDGRT--------------------------------------------------MFSFyTAPALPFLVLAVVYVLGA 502
                 333333333..................................................33333445555555555555544 PP

  == domain 5  score: -3.8 bits;  conditional E-value: 3
       PMT_2 145 alllalllfs 154
                  ++l+++ f 
  KIR65028.1 544 LVALCFAYFY 553
                 2333333333 PP

>> OCC1  OCC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   3.4    0.0078        35       6      27 ..       5      30 ..       2      36 .. 0.71
   2 ?    5.3   0.1    0.0049        22      14      43 ..     509     539 ..     502     547 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0078
        OCC1  6 sta..asaGgrGp..agaakDvaees 27
                sta  asaG  Gp  ag+a D++ees
  KIR65028.1  5 STAqsASAGQAGPeqAGSAGDATEES 30
                6662245664454449*********9 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0049
        OCC1  14 rGp.agaakDvaeesvsdddkRRnYGGvYvG 43 
                  G+ a aak ++ +   +   RR  GGv vG
  KIR65028.1 509 DGArAPAAKGASADGEDEVAERRLVGGVIVG 539
                 443256789999999999999*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 3986.31
//
Query:       KIR65029.1  [L=279]
Description: uroporphyrin-III methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-30  105.5   2.9    6.1e-30  104.8   2.9    1.3  1  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8   2.9   3.4e-34   6.1e-30       1     213 []       6     209 ..       6     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 3.4e-34
  TP_methylase   1 klylVGvGpGdpellTvrAlralktadvvlgddsr.aleilldllaeeleleapmgkekepleeayeeiaealaealragkdVvllv.sGDPlvygt 95 
                   +l+l G+++G+p++ + r +++l++advv+++d+r  +++++dl+      ++  g+ ++  e++ e     l+e lr+g  V+l++ +G+P+v+++
    KIR65029.1   6 RLILLGAPLGNPADASGRLREVLAAADVVAAEDTRrLTRLARDLD------VTVGGRIVSYFEGNEERRTPELVEILREGYVVALVTdGGMPSVSDP 96 
                   689******************************886666666665......6788999999********************9*************** PP

  TP_methylase  96 gselvealrareagieveviPGvsslqaaaarlgiplteggevlsvllpglakeeereleallangdtlvllkaprklaelaelLkealyddttpva 192
                   g +lv+ + +  ag++v   PG+s++++a a +g+p + +  +  +l p++   ++++++al+a+ +tlvl++ap+++a ++++L++ +++ ++p+a
    KIR65029.1  97 GYRLVRGALD--AGVPVTAAPGPSAVTTALALSGLPSDRFCFE-GFL-PRTPGARRSRVRALAAEERTLVLFEAPHRIAGALADLAAGFGA-DRPAA 188
                   *****87777..9***********************9955555.444.566667999999****************************555.67*** PP

  TP_methylase 193 vveragtedervvrgtleela 213
                   ++++++++ e+vvr +l+ela
    KIR65029.1 189 LCRELTKTYEEVVRRPLGELA 209
                   ******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2044.90
//
Query:       KIR65030.1  [L=600]
Description: methionine--tRNA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.7e-148  493.9   0.0   3.3e-148  493.6   0.0    1.0  1  tRNA-synt_1g  tRNA synthetases class I (M)
    4.3e-16   58.3   0.6      4e-08   32.0   0.1    3.8  3  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
      3e-09   36.6   0.0     0.0021   17.5   0.0    2.2  2  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
     0.0014   18.6   0.0     0.0021   18.0   0.0    1.2  1  Anticodon_1   Anticodon-binding domain of tRNA
  ------ inclusion threshold ------
       0.14   11.1   0.0       0.28   10.1   0.0    1.4  1  tRNA-synt_1f  tRNA synthetases class I (K)
        2.6    7.6   6.2        4.9    6.7   0.5    2.2  2  zf-ribbon_3   zinc-ribbon domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  493.6   0.0  1.1e-151  3.3e-148       2     390 ..       5     414 ..       4     415 .. 0.97

  Alignments for each domain:
  == domain 1  score: 493.6 bits;  conditional E-value: 1.1e-151
                   EEEE--B--SS---HHHHH.HHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEEETTSHHHH CS
  tRNA-synt_1g   2 lvttalpYangklHlGhll.evisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfdkygrttseehk 97 
                   l  +a+pYang+ H+Gh+    +++D+faRy r+ g++vl+v+gtDehGtpi+++A++egvtp+el++++++ i+e+++ l++s+d ++rtt+++h+
    KIR65030.1   5 LAAVAWPYANGPRHIGHVSgFGVPSDVFARYMRMAGHDVLMVSGTDEHGTPIQVQADAEGVTPRELADRYNRVIAEDLRALGLSYDLFTRTTTRNHY 101
                   5678********************************************************************************************* PP

                   HHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-EE........-TTS-EE-TTSSB-E................EEE.EEEEEE-GGGGHHH CS
  tRNA-synt_1g  98 elvqeifkklkekgliyekeieqlycpkderflpdryvegtCPkckseeargdqceecgkkleptelinpksaisgskpevketehlffklskfekk 194
                    +vqe+f  l+++g+i  + ++++++p+++r+lpdry+egtCP c++++argdqc++cg++l+p +linpks+i+g++pe+ eteh+f++l++++++
    KIR65030.1 102 AVVQELFAGLHRNGYIVPRVTTGAISPSTGRTLPDRYIEGTCPICGYDSARGDQCDNCGNQLDPVDLINPKSKINGETPEFVETEHFFLDLPALADA 198
                   ************************************************************************************************* PP

                   HHHHH.HH-TTSHHHHHHHH.HHHHT----EE-ESS-SSS-EET.....TECCEEE-HHHHHHHHHHHTTTTT-...TTSGGGG.G-...-S..... CS
  tRNA-synt_1g 195 lkewieeeekeleenvkkivkewlkegLkdlaisrdldwGipvP.....gaekkvlYVWldAligYisatkelakkkgeeekwkeyW...akdkeve 283
                   l++w+   ++ ++ nv ++++++l++ L+++ai+rdl+wG+p+P     ++++k +YVW+dA+igY+sa+ e+a+++g++e w+++W   a+ ++++
    KIR65030.1 199 LRQWL-DGREGWRPNVLRFSRNLLDD-LQPRAITRDLEWGVPIPlddwrDRPDKRIYVWFDAVIGYLSASIEWARRTGDPEAWRRWWsadAEGRDAR 293
                   *****.77779*************99.*********************99*************************************6655567899 PP

                   .EEEEEGGGHHHHHTHHHHHHHH..............TT----S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE CS
  tRNA-synt_1g 284 lvhfigkdiikFHtifwPaillg..............aelklpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaeapekkDldf 366
                    ++f+gkd+i FH+++wPa+l g               +l+lp++vv++eylt+eg+K+S+Sr+vv++++++ler+dad+lRY++a+++pe++D+df
    KIR65030.1 294 SYYFMGKDNIVFHSVIWPALLGGysgagdhdgepgalGRLNLPTEVVSSEYLTMEGRKFSSSRKVVIYVRDFLERYDADALRYFIAVAGPESNDTDF 390
                   *********************99999988888888888888******************************************************** PP

                   -HHHHHHHHHHHCCCHHHHHHHHH CS
  tRNA-synt_1g 367 swedfvervNseLadklgnlvnRv 390
                   +w++f +r+N+eL++ +gnlvnR+
    KIR65030.1 391 TWAEFLRRNNDELVAGWGNLVNRS 414
                   ***********************7 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.1   1.3e-11     4e-08      32      87 ..      11      66 ..       4     129 .. 0.78
   2 !    8.3   0.0    0.0002      0.59     368     443 ..     176     253 ..     160     272 .. 0.79
   3 !   12.7   0.0   9.2e-06     0.027     558     599 ..     346     388 ..     337     391 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1.3e-11
  tRNA-synt_1 32 PyvtGslHiGhalaktl.kdivirykrmkGkevlyvpGwDhaGlaieakvekklgak 87
                 Py++G  HiGh+    +  d+  ry rm G++vl v G+D +G +i+ + +++ g +
   KIR65030.1 11 PYANGPRHIGHVSGFGVpSDVFARYMRMAGHDVLMVSGTDEHGTPIQVQADAE-GVT 66
                 ***********99865538****************************999987.333 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0002
  tRNA-synt_1 368 skkpiiyrateqWfvrvkeladaalkave.kvqfvpkskekryaswleniqdWciSRqrwWGhripl..fvsketeevv 443
                  +++  ++  te  f  + +lada+ + ++ +  + p+  +    ++l + q  +i R++ WG++ipl  ++++  + ++
   KIR65030.1 176 NGETPEFVETEHFFLDLPALADALRQWLDgREGWRPNVLRF-SRNLLDDLQPRAITRDLEWGVPIPLddWRDRPDKRIY 253
                  55556777888889999999998888888778899988543.4689********************8667776666655 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 9.2e-06
  tRNA-synt_1 558 deeGrKmSKslgNvidpldvikkygadalRltli.lsdvgrdi 599
                    eGrK S s + vi   d +++y adalR++++   + ++d+
   KIR65030.1 346 TMEGRKFSSSRKVVIYVRDFLERYDADALRYFIAvAGPESNDT 388
                  569******************************9666666665 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.1e-06    0.0032      23     120 ..      17     116 ..       7     127 .. 0.82
   2 !   17.5   0.0     7e-07    0.0021     244     282 ..     342     380 ..     334     393 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
                   -BHHHHHHH.HHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SB--BGG.GGHHHHHHHHHHHHH CS
  tRNA-synt_1e  23 shlGhaRsl.vafDilrrilqalgYdvqfvqnvtDidDkiikrareeeksvkelaekfieefkkdleaLnvlkptleprvs.ekvdeiielveklie 117
                    h+Gh+  + v  D+++r+++++g+dv  v+   +    i  +a +e+ + +ela+++ +   +dl+aL++    ++   + ++ + + el + l  
    KIR65030.1  17 RHIGHVSGFgVPSDVFARYMRMAGHDVLMVSGTDEHGTPIQVQADAEGVTPRELADRYNRVIAEDLRALGLSYDLFTRTTTrNHYAVVQELFAGLHR 113
                   6****9875499*******************98888999999****************************987544333331455666677777777 PP

                   TTS CS
  tRNA-synt_1e 118 kgy 120
                   +gy
    KIR65030.1 114 NGY 116
                   776 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 7e-07
                   E--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHS CS
  tRNA-synt_1e 244 nghlkiegekmsksLknfitikdvlkkfdprqlRlllls 282
                   +++l++eg+k s s k +i ++d+l+++d+ +lR++++ 
    KIR65030.1 342 SEYLTMEGRKFSSSRKVVIYVRDFLERYDADALRYFIAV 380
                   689********************************9975 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   7.2e-07    0.0021      14     108 ..     450     538 ..     437     552 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7.2e-07
  Anticodon_1  14 evteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkra..aqevllevletllrllaPfmPfitEelwqreeeelgkkesimlaewp 108
                  +v + + + r ++a+ +++   + +  + yl    p+  +++a+++r   + +v l v++    ll Pf+P+ ++ +     e+lg+    ++a++p
   KIR65030.1 450 TVGDLIGRHRQKQAIGEAMRV-VAEA-NKYLSEQAPWKLKAEADKPRMgtILHVALQVVSDANTLLTPFLPHSAQQIH----ELLGGTG--VHAPMP 538
                  6666777778899999***95.6666.9***********9999877555455*************************9....7765442..345555 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   9.3e-05      0.28     272     316 ..     343     386 ..     333     407 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 9.3e-05
  tRNA-synt_1f 272 elillkggekmssSkGnvltledwlevaepevlrflilrrkPkka 316
                   e+++++g+ k ssS+ +v+ ++d le +  + lr++i+ + P+++
    KIR65030.1 343 EYLTMEGR-KFSSSRKVVIYVRDFLERYDADALRYFIAVAGPESN 386
                   45555555.****************************99888764 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.8      0.02        59      18      24 ..     142     148 ..     141     150 .. 0.76
   2 ?    6.7   0.5    0.0016       4.9       4      14 ..     155     165 ..     152     169 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.02
  zf-ribbon_3  18 vCpyCGt 24 
                  +Cp CG+
   KIR65030.1 142 TCPICGY 148
                  5888887 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0016
  zf-ribbon_3   4 rCPnCGaplss 14 
                  +C nCG++l++
   KIR65030.1 155 QCDNCGNQLDP 165
                  79****98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4424.47
//
Query:       KIR65031.1  [L=283]
Description: bromoperoxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-30  104.6   0.0    1.1e-28  100.6   0.0    2.0  1  Abhydrolase_1  alpha/beta hydrolase fold
    6.3e-27   95.6   2.6    7.4e-27   95.4   2.6    1.0  1  Abhydrolase_6  Alpha/beta hydrolase family
    7.5e-21   74.5   0.0    9.7e-20   70.8   0.0    2.0  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0019   18.3   0.0     0.0033   17.5   0.0    1.4  1  Abhydrolase_4  TAP-like protein
     0.0042   16.5   0.0       0.01   15.2   0.0    1.5  2  DUF915         Alpha/beta hydrolase of unknown function (DUF9
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.025   14.5   0.0    1.4  1  Ser_hydrolase  Serine hydrolase
      0.027   14.2   0.8       0.15   11.7   0.1    2.1  2  PGAP1          PGAP1-like protein
      0.059   13.0   0.1        4.9    6.7   0.0    2.2  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
      0.074   12.1   0.0        0.1   11.7   0.0    1.3  1  DUF1749        Protein of unknown function (DUF1749)
      0.084   12.4   0.0       0.11   12.0   0.0    1.3  1  DUF900         Alpha/beta hydrolase of unknown function (DUF9
       0.17   11.7   0.0         19    5.0   0.0    2.3  2  Abhydrolase_5  Alpha/beta hydrolase family
       0.22   10.7   0.0        0.3   10.2   0.0    1.2  1  LCAT           Lecithin:cholesterol acyltransferase
       0.25   10.8   0.0       0.69    9.4   0.0    1.8  1  Lipase_2       Lipase (class 2)


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0   8.1e-32   1.1e-28       2     256 ..      26     263 ..      25     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 8.1e-32
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHH.GG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaey.pe 96 
                    ++v++hG+p ++  w +    +aL  +g+++i++D rG+g Ss + a     y  +++a+dld ++  l++++++l+GhSmG+  ++ y+  y  +
     KIR65031.1  26 PVVLIHGFPFNGATWEK--QTNALLAAGYRTITYDRRGFGNSSQPAAG----YDYDTFAADLDVLMTELDLRNVILIGHSMGTGEVTRYLGTYgSN 115
                    8****************..99999999*******************86....55556*************************************** PP

                    GEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHH CS
  Abhydrolase_1  97 rVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksieqw 192
                    rV++ vll++   a+ l ++ ++    +   fdg+ ++    +++ l ++  ++ ++ ++ +     +++s  +++  +d+    ++ + +    +
     KIR65031.1 116 RVDRAVLLAP--LAPFLLKTPDNPEGLDRSLFDGFQQAILADRFAFLTSFCDNFFNYADN-KG----RLVSEEAYRAHWDIGARASAIGTYQSVDA 204
                    **********..777777777777777777777777777777777777776666666644.23....66666666666666665555555555555 PP

                    HHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCH.HHHHHHHHCHTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 193 pttdsaklllrlrelknvlaptlvisgtsDplvpp.kaledlaqllpkkrlvvisdagHlafleg 256
                      td+++   r++       p+l+++g++D++ p+   + +l+  lp+ rlv++ +a H + +++
     KIR65031.1 205 WLTDFRPDVPRIDV------PVLIVQGDQDRVLPYgVTGQRLQPMLPDGRLVTLKGAPHGIPWTN 263
                    55556677788888......***************9999999999************99887765 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   2.6   5.3e-30   7.4e-27       1     220 []      27     270 ..      27     270 .. 0.69

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 5.3e-30
                    EEEE--GC.....G.CHHHHHHHHCCTCEEEEE--TTSTS-GGCS..--HHH.CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC...... CS
  Abhydrolase_6   1 vlllHGagssassW.lvapLaallaagvhvlapDlpGhGrsdppp..ldled.ladlaalldelaagggpvvlvGHSlGGalalaaapla...... 86 
                    v+l+HG+++++  W    +  allaag++++++D++G+G s+ p+  +d++  +adl+ l +el  + ++v+l+GHS+G+  +++   ++      
     KIR65031.1  27 VVLIHGFPFNGATWeK--QTNALLAAGYRTITYDRRGFGNSSQPAagYDYDTfAADLDVLMTEL--DLRNVILIGHSMGTGEVTR---YLgtygsn 115
                    8*************54..778889***************6655553366655667778888888..5************887777...44455699 PP

                    ...EEEEES-........----TTTS----TTHHHHHHTT-CCCCHCCH........S-HSCCCCHHH..CCCCHCHCCCGHH..HHCCHHCHTTC CS
  Abhydrolase_6  87 .lvvgvlldp.pp.....talpagllaaalelllallallrllawlsre........plprlfladed..adaawrarlarla..allaglgllpa 163
                     ++++vll+p  p     +  p gl + ++  +++++ + r+ a+l+          +   +++++e+  a+ + +ar ++    ++ +++ +  +
     KIR65031.1 116 rVDRAVLLAPlAPfllktPDNPEGLDRSLFDGFQQAILADRF-AFLTSFcdnffnyaDNKGRLVSEEAyrAHWDIGARASAIGtyQSVDAWLTDFR 210
                    66666*****51134444456666688888888888887777.44432223333322344466666662223344444444444444446666668 PP

                    CHHTT-TTGCEEE.CTT-CHHH.HCHHCCCH..STTEEETCE...SSS.-HHHHSHHHHHHH CS
  Abhydrolase_6 164 aawadlpvpllvl.ggeDplvp.rllerlla..qagarlpvvlpgaGH.lphleepdevaea 220
                    ++++++ vp+l++ g++D+++p     ++l+  +++ rl v+l+ga H  p+  ++dev++a
     KIR65031.1 211 PDVPRIDVPVLIVqGDQDRVLPyGVTGQRLQpmLPDGRL-VTLKGAPHgIPWT-NADEVNRA 270
                    8*********99999****888322334444677*****.********88887.99**9875 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   7.1e-23   9.7e-20       7     234 ..      27     259 ..      23     261 .. 0.77

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 7.1e-23
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypd.kvag 103
                  vvl+HG+       ++ ++aL a+G+ ++++D rG+G+s  + +   ++d++ +Dl+ +++++      ++++l+GhSmG   +++yl +y + +v++
   KIR65031.1  27 VVLIHGFPFNGATWEKQTNALLAAGYRTITYDRRGFGNS-SQPAAGYDYDTFAADLDVLMTELDL----RNVILIGHSMGTGEVTRYLGTYGSnRVDR 119
                  9**************************************.6666679************998884....469****************888776999* PP

  Hydrolase_4 104 lilsaPalkikakl.........kappllklllkllgkllpklqv...........snnlkadslsrdpevvaayeadplvhgkitvrlllellda.m 180
                  ++l aP+     k+         +       l   +  + ++  +            n  + ++        +ay+a+  ++ + ++   ++ +da +
   KIR65031.1 120 AVLLAPLAPFLLKTpdnpegldrS-------L---FDGF-QQAILadrfafltsfcDNFFNYADNKGRLVSEEAYRAHWDIGARASAIGTYQSVDAwL 206
                  ******987776653322222221.......2...2222.22222233355655554444444444444555799999***77777777777777637 PP

  Hydrolase_4 181 krleeraakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHel 234
                   + + ++++i++P+l+++G++D+v +++ + + ++ +   d +l + +g+ H +
   KIR65031.1 207 TDFRPDVPRIDVPVLIVQGDQDRVLPYGVTGQRLQPMLP-DGRLVTLKGAPHGI 259
                  89****************************666666664.99999999999976 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.4e-06    0.0033      34      94 ..     217     278 ..     193     283 .] 0.81

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.4e-06
  Abhydrolase_4  34 aapvLllqnerDpaTPyeg.akklakalggavlvtvegeGHgalaagntCvdkavdaYLltG 94 
                    ++pvL++q+ +D + Py   +++l+  l++++lvt +g+ Hg   ++ + v++a+ +++  +
     KIR65031.1 217 DVPVLIVQGDQDRVLPYGVtGQRLQPMLPDGRLVTLKGAPHGIPWTNADEVNRAILEFVVAP 278
                    57***************8616889999999************97788888888888887766 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.1   2.9e+03      11      20 ..      24      33 ..      19      48 .. 0.76
   2 !   15.2   0.0   7.3e-06      0.01      96     128 ..      84     116 ..      72     135 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.1
      DUF915 11 eiPtifihGy 20
                  P+++ihG+
  KIR65031.1 24 GQPVVLIHGF 33
                5799999998 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 7.3e-06
      DUF915  96 LkkkYnikkfnavGhSmGglaltsYleeyaddk 128
                 L  +  + ++ ++GhSmG  ++t+Yl +y++++
  KIR65031.1  84 LMTELDLRNVILIGHSMGTGEVTRYLGTYGSNR 116
                 55566788999******************9986 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.8e-05     0.025      45      92 ..      80     128 ..      66     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.8e-05
                    HHHHHHHC-S.TTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--SG CS
  Ser_hydrolase  45 aleaaveaae.ekvvlvAHSlgclavlhaaelqlakkvagalLVapadv 92 
                     l+  ++++  ++v+l+ HS+g   v +++     ++v++a+L ap ++
     KIR65031.1  80 DLDVLMTELDlRNVILIGHSMGTGEVTRYLGTYGSNRVDRAVLLAPLAP 128
                    55555555542679********************************987 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.25   3.5e+02       3      20 ..      23      40 ..      21      91 .. 0.53
   2 ?   11.7   0.1   0.00011      0.15      90     113 ..      90     114 ..      83     131 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.25
       PGAP1  3 sGipVlFvpGnagsykqv 20
                +G pV++++G   +   +
  KIR65031.1 23 AGQPVVLIHGFPFNGATW 40
                799*******64443333 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
       PGAP1  90 ptsviliGHSmG.Givaraaltlkn 113
                  ++viliGHSmG G v r + t+ +
  KIR65031.1  90 LRNVILIGHSMGtGEVTRYLGTYGS 114
                 578*********9999998877765 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0035       4.9      45      71 ..      39      65 ..      17      76 .. 0.90
   2 ?    4.2   0.0     0.019        27     213     243 ..     203     231 ..     164     239 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0035
                   CCHGGGHHHHHTT-EEEEEE-TTSTTS CS
  Peptidase_S15 45 elelqdkvfvarGYavVvqdvrGtggS 71
                   ++e q ++++a GY  + +d rG+g+S
     KIR65031.1 39 TWEKQTNALLAAGYRTITYDRRGFGNS 65
                   57778888*****************99 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.019
                    HHHHTT-HHHHHCT--S-EEEEEECCSSTTC CS
  Peptidase_S15 213 afWkdrnlsedadkvkapvllvgGwnDwnvk 243
                    ++W     + d+ ++++pvl+v+G +D  v+
     KIR65031.1 203 DAWLTDF-RPDVPRIDVPVLIVQGDQD-RVL 231
                    4444433.34689**************.544 PP

>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.3e-05       0.1     102     143 ..      88     126 ..      45     172 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.3e-05
     DUF1749 102 ekkekvvlmGHstGsqdvlyYltssnerdrekvdgailqapv 143
                  + + v+l+GHs G+ +v  Yl    +   ++vd a+l ap 
  KIR65031.1  88 LDLRNVILIGHSMGTGEVTRYLGTYGS---NRVDRAVLLAPL 126
                 57899*****************87644...677777777764 PP

>> DUF900  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.2e-05      0.11      75     124 ..      72     121 ..      37     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.2e-05
      DUF900  75 asrdalekllrylatkksakkihllaHSmGtwlvlealrqlaieadepav 124
                 +  d ++  l  l t+ + +++ l+ HSmGt  v+  l     +  ++av
  KIR65031.1  72 YDYDTFAADLDVLMTELDLRNVILIGHSMGTGEVTRYLGTYGSNRVDRAV 121
                 556788999999*******************9998888776665555444 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.026        35      52      88 ..      86     124 ..      77     128 .. 0.75
   2 ?    5.0   0.0     0.014        19      98     140 ..     215     257 ..     205     259 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.026
  Abhydrolase_5  52 eapklekfvvgGhslGGvvasrfaaee..ekiegvvfla 88 
                       +l++ ++ Ghs+G   ++r+      ++++ +v+la
     KIR65031.1  86 TELDLRNVILIGHSMGTGEVTRYLGTYgsNRVDRAVLLA 124
                    5567889999******88888887643225888888887 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.014
  Abhydrolase_5  98 elskkvlsivgteDgvlnvkslekakkflpkdtkvvsieGgnh 140
                    +  ++vl + g++D vl++    ++ + +  d ++v+++G  h
     KIR65031.1 215 RIDVPVLIVQGDQDRVLPYGVTGQRLQPMLPDGRLVTLKGAPH 257
                    56789**********************9999*********998 PP

>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00022       0.3     106     141 ..      75     111 ..      37     122 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00022
        LCAT 106 skLkelieealk.lsgkkvvliaHSmGnllvlyflkw 141
                    ++ ++  +  l+ ++v+li+HSmG   v  +l  
  KIR65031.1  75 DTFAADLDVLMTeLDLRNVILIGHSMGTGEVTRYLGT 111
                 555555665555488899*********8776666655 PP

>> Lipase_2  Lipase (class 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0005      0.69       2      85 ..      25     101 ..      24     127 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0005
    Lipase_2   2 ePviivhGnsdlaaeklskliqkflekgyteaelYattygdteestslerlekCeyvkqlRklilaVlkyTgakkvdivahsmG 85 
                 +Pv+++hG     +  ++k  + +l +gy       +ty+++   +s + ++  +y +   +l +   +   + +v  ++hsmG
  KIR65031.1  25 QPVVLIHGF-PFNGATWEKQTNALLAAGYRT-----ITYDRRGFGNSSQPAAGYDYDTFAADLDVLMTELDLR-NVILIGHSMG 101
                 8*******9.557889************998.....7888777777777666555555556665555565555.6777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2044.31
//
Query:       KIR65032.1  [L=415]
Description: hypothetical protein TK50_05785 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3205.70
//
Query:       KIR65033.1  [L=318]
Description: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-07   31.9   3.3    1.5e-07   31.7   2.1    1.8  2  GHMP_kinases_C  GHMP kinases C terminal
    4.1e-07   30.2   2.1    1.7e-06   28.2   2.1    2.0  1  GHMP_kinases_N  GHMP kinases N terminal domain


Domain annotation for each model (and alignments):
>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.5   1.3e+04      40      56 ..      89     105 ..      84     105 .. 0.72
   2 !   31.7   2.1   1.6e-11   1.5e-07       2      83 ..     225     300 ..     224     302 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.5
  GHMP_kinases_C  40 lealselGalgaklsGa 56 
                     ++a+ +l  +++++++a
      KIR65033.1  89 IRAAHALAGYAGVMPHA 105
                     56666666699999887 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 1.6e-11
  GHMP_kinases_C   2 lealergdlellgellnlsqrs..elkavvgilppeleellealselGalgaklsGaGgGptvfalfkdkdeaeqvaralreef 83 
                     l+al+++d + l+  l     +  +    +  + p+l + l+a +++Gal++ +sG+  Gpt++ l+ d ++ae++a +l +++
      KIR65033.1 225 LAALRQRDPRVLAATLG----NdlQA--AALAMRPSLAATLKAGEAAGALAGIVSGS--GPTCVFLAADAADAERIAAELEAAG 300
                     56777777777777777....42334..99999************************..********************98876 PP

>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   2.1   1.8e-10   1.7e-06       1      66 []     106     164 ..     106     168 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.8e-10
                     EEEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHSS CS
  GHMP_kinases_N   1 divikseiPvgaGLGSSAAlavalvaAllallglsleeaklaleaerlaqggngsggDvaasvyGg 66 
                     ++++++ iP++ GL++++A+a+a+++A  al+g        +l   +la+ +   g Dv++ ++Gg
      KIR65033.1 106 RLHLRKQIPLAGGLAGGSADAAAALVACDALWG-------TGLSRDELAGIAADLGSDVPFLIHGG 164
                     5899****************************7.......55666666666666777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2561.90
//
Query:       KIR65034.1  [L=603]
Description: glycerophosphodiester phosphodiesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-51  173.3   0.0    5.4e-25   88.5   0.0    3.2  3  ABC_tran         ABC transporter
    1.2e-20   74.6   1.9    1.4e-05   25.0   0.0    4.2  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    4.4e-09   36.5  13.3    4.4e-09   36.5  13.3    2.1  2  ABC_tran_CTD     ABC transporter C-terminal domain
    7.8e-08   32.9   5.8    8.5e-05   23.0   0.2    3.2  3  AAA_16           AAA ATPase domain
    1.3e-07   31.3   0.0        1.2    8.6   0.0    4.2  4  SMC_N            RecF/RecN/SMC N terminal domain
    3.4e-07   30.3   0.1      0.014   15.5   0.0    2.8  2  MMR_HSR1         50S ribosome-binding GTPase
    2.4e-06   26.6   2.0      0.045   12.4   0.0    3.1  3  AAA_13           AAA domain
    4.8e-06   26.5   2.3    0.00014   21.8   0.0    2.6  2  ABC_tran_Xtn     ABC transporter
    5.8e-06   25.9   0.2      0.027   14.2   0.0    2.5  2  AAA_29           P-loop containing region of AAA domain
    1.9e-05   24.9   1.1       0.12   12.6   0.0    3.3  2  AAA_22           AAA domain
    4.1e-05   24.1   0.4        1.1    9.8   0.0    3.9  4  AAA_18           AAA domain
    7.2e-05   23.1   3.3      0.044   14.0   0.1    3.5  3  AAA_28           AAA domain
    9.1e-05   21.6   2.1      0.014   14.4   0.0    2.6  3  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
    0.00013   22.6  10.7       0.83   10.1   0.0    3.1  2  AAA_23           AAA domain
    0.00016   21.2   0.7       0.13   11.7   0.1    2.5  2  Arf              ADP-ribosylation factor family
    0.00024   21.0   0.3       0.68    9.8   0.0    2.9  3  RsgA_GTPase      RsgA GTPase
    0.00087   19.2   0.0       0.38   10.7   0.0    2.6  2  NACHT            NACHT domain
     0.0015   18.1   0.4       0.82    9.2   0.0    2.5  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0019   18.4   2.6       0.23   11.6   0.0    3.4  3  AAA_33           AAA domain
     0.0033   17.6   0.7         10    6.4   0.3    3.8  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
     0.0097   16.0   0.8        3.4    7.7   0.1    2.6  2  DUF87            Helicase HerA, central domain
  ------ inclusion threshold ------
      0.013   15.3   0.0        2.2    8.0   0.0    2.3  2  AAA_24           AAA domain
      0.016   15.6   2.6      0.051   14.0   2.6    1.8  1  Wbp11            WW domain binding protein 11
      0.017   15.3   0.0        6.7    7.0   0.0    2.4  2  Roc              Ras of Complex, Roc, domain of DAPkinase
      0.017   14.4   0.0        2.9    7.1   0.0    2.5  2  Zeta_toxin       Zeta toxin
      0.018   14.2   0.1        4.6    6.3   0.0    2.4  2  NB-ARC           NB-ARC domain
      0.022   14.5   0.0        7.7    6.1   0.0    2.2  2  AAA_15           AAA ATPase domain
      0.024   12.2  14.0      0.026   12.1   0.1    3.0  3  DUF3584          Protein of unknown function (DUF3584)
      0.024   15.1   3.4      0.059   13.9   3.4    1.7  1  APG6_N           Apg6 coiled-coil region
      0.027   14.4   0.1        4.5    7.2   0.0    2.4  2  MobB             Molybdopterin guanine dinucleotide synthesis
      0.042   14.1   2.5      0.099   12.9   2.5    1.5  1  TMF_TATA_bd      TATA element modulatory factor 1 TATA bindin
      0.047   13.4  11.6       0.65    9.7   0.2    3.6  3  AAA_30           AAA domain
      0.062   12.1   1.0        1.5    7.6   0.0    2.7  3  DLIC             Dynein light intermediate chain (DLIC)
      0.066   12.9   0.0        9.1    5.9   0.0    2.3  2  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
      0.069   13.0   0.3        6.4    6.6   0.0    2.3  2  dNK              Deoxynucleoside kinase
      0.087   13.1   1.2       0.21   11.8   1.2    1.5  1  Med21            Subunit 21 of Mediator complex
      0.089   12.4   4.9        2.8    7.5   0.0    3.6  4  AAA_27           AAA domain
      0.098   12.7   0.0        6.7    6.7   0.0    2.4  2  Dynamin_N        Dynamin family
        0.1   12.6   0.1        3.4    7.7   0.0    2.3  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.11   12.0   2.4          4    7.0   0.0    2.5  2  SRP54            SRP54-type protein, GTPase domain
       0.13   12.7   0.5         24    5.3   0.0    3.2  3  AAA_17           AAA domain
        0.2   11.7   0.3         20    5.2   0.0    3.0  2  AAA_14           AAA domain
       0.25   11.7   1.7       0.42   11.0   1.7    1.3  1  YlqD             YlqD protein
       0.25   11.1   0.7        4.9    6.9   0.1    2.2  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
        0.4   10.5   2.0       0.63    9.8   2.0    1.2  1  DUF724           Protein of unknown function (DUF724)
       0.91   10.0   5.0        2.2    8.7   5.0    1.6  1  CENP-H           Centromere protein H (CENP-H)
        4.6    7.1  10.0       0.45   10.3   3.2    2.6  3  DivIC            Septum formation initiator
        6.4    6.4   6.1         13    5.4   0.0    2.6  2  Thymidylate_kin  Thymidylate kinase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.0   1.5e-27   5.4e-25       1     137 []      21     160 ..      21     160 .. 0.91
   2 !   78.7   0.0   1.6e-24   5.8e-22       1     137 []     307     441 ..     307     441 .. 0.83
   3 ?    2.2   0.1      0.62   2.3e+02      50     100 ..     537     587 ..     520     599 .. 0.64

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 1.5e-27
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................esd 82 
                 l +vsl l    ++++vG nGaGKStLl++l+++++p+ G++           +++ + ++ +lpq  +l pe tvr+                  + d
  KIR65034.1  21 LTDVSLGLDDADRIGVVGLNGAGKSTLLRMLTKQEDPDDGRV-----------THRRDLRVLWLPQALTLAPEATVRDVvlgtawlgqsmgaehewAGD 108
                 679***************************************...........6688999***************************999877665555 PP

                 TCHHHHHHHSTTGGT.TCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkel.kdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 + + ++l+ lg+++l  d++v      +SgG+++rvala++l+++++ll+lDEpt+
  KIR65034.1 109 AGVRAILDGLGMPHLgLDQPV----GPMSGGERRRVALAALLVRESDLLILDEPTN 160
                 55*********9995245555....******************************8 PP

  == domain 2  score: 78.7 bits;  conditional E-value: 1.6e-24
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHHHHSTTG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvrenesdeeiekalsklglk 95 
                 l++ ++++ +g ++ai+G+nGaGK+tLl+llag ++p+ G+ +  g  +k     qel +l  +++vl+  +++ +++++++  +++ ++++++ +g +
  KIR65034.1 307 LHDTTWQVGPGDRIAILGRNGAGKTTLLRLLAGITRPDGGRFHT-GSTVKPaflsQELAELPGHLRVLEAVEEVARRVQLGD--REVSAAQLAEVFGFD 402
                 678999***********************************954.4555555677888888888888888888888876555..455566666667755 PP

                 GTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  96 elkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                    d+++ +    LSgG+++r+++ r+l+ +p++ll+DEpt+
  KIR65034.1 403 ---DRRLWTPVGDLSGGERRRLQMLRLLAAEPNVLLFDEPTN 441
                 ...47776777******************************8 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.62
                 GGB-HHHCCHCEEEE-SS.--S-TTSBHHHH.......HHHTCHHHHHHHSTTGGTTCB CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  50 keqeleslrkeigvlpqe.pqlfpeltvren.......esdeeiekalsklglkelkdt 100
                  ++el++l+++i+ l+q  ++l ++l +++        e d+++++++++        +
  KIR65034.1 537 AKKELTRLERQIAKLEQReATLLDQL-AANAtdyarvaELDAQLKDVRAE-------RE 587
                 3368999**********988888888.44442455555444444444443.......33 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00085      0.32       3      19 ..      35      51 ..      34      69 .. 0.88
   2 !   17.0   0.0     1e-05    0.0039     233     297 ..     128     186 ..     121     191 .. 0.76
   3 !   18.0   0.2   5.3e-06     0.002       3      26 ..     321     344 ..     320     368 .. 0.76
   4 !   25.0   0.0   3.8e-08   1.4e-05     220     303 .]     396     473 ..     361     473 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00085
      AAA_21  3 vliGpNgsGKSnLLdal 19
                +++G Ng+GKS+LL+ l
  KIR65034.1 35 GVVGLNGAGKSTLLRML 51
                689***********987 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1e-05
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 p+  +S G +r  al+++l r     +ll++DEp n+L+   +  l+   k l  +++ ++++TH
  KIR65034.1 128 PVGPMSGGERRRVALAALLVRES---DLLILDEPTNHLDVGGVDWLA---KHLVGRRGALVVVTH 186
                 666699******9*******988...9************95555555...444444566666666 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 5.3e-06
      AAA_21   3 vliGpNgsGKSnLLdaldllarld 26 
                 ++ G+Ng+GK++LL++l ++ r d
  KIR65034.1 321 AILGRNGAGKTTLLRLLAGITRPD 344
                 799**************9996643 PP

  == domain 4  score: 25.0 bits;  conditional E-value: 3.8e-08
      AAA_21 220 gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpllld 303
                   vf  ++++ ++p+ +lS G +r l +l +l++ +    +ll+DEp n L+   l+ l +ll    ++ + +i+++H+ +l++
  KIR65034.1 396 AEVFGFDDRRLWTPVGDLSGGERRRLQMLRLLAAEP---NVLLFDEPTNDLDTDTLAALEDLL---DSWPGTIIVASHDRYLIE 473
                 56788889999**************99999999988...89************8888888777...55778********99985 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       9.3   3.5e+03       8      22 ..     361     375 ..     359     390 .. 0.83
   2 !   36.5  13.3   1.2e-11   4.4e-09       4      69 .]     535     598 ..     533     598 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 9.3
  ABC_tran_CTD   8 releeleaeIeaLEe 22 
                   +el+el+ ++  LE+
    KIR65034.1 361 QELAELPGHLRVLEA 375
                   689999999888887 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 1.2e-11
  ABC_tran_CTD   4 ykeqreleeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeelyerWeeLee 69 
                   ++ ++el +le++I++LE++ a+l ++la+++  +d++++ael a+l++++ae e+ +e W+ L+e
    KIR65034.1 535 RQAKKELTRLERQIAKLEQREATLLDQLAANA--TDYARVAELDAQLKDVRAEREQVEESWLALAE 598
                   5789***************************9..******************************87 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0    0.0011      0.43      29      58 ..      36      66 ..      29     182 .. 0.72
   2 !   23.0   0.2   2.3e-07   8.5e-05      27     161 ..     320     457 ..     306     471 .. 0.69
   3 ?   -0.7   0.3       4.2   1.6e+03     107     142 ..     525     560 ..     490     594 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0011
      AAA_16 29 lsGesGvGKsslvrellralekdggif.lrg 58
                ++G  G GKs+l+r+l ++   d+g +  r 
  KIR65034.1 36 VVGLNGAGKSTLLRMLTKQEDPDDGRVtHRR 66
                89***************99888865552333 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2.3e-07
      AAA_16  27 vllsGesGvGKsslvrellralekdggiflrgkcdql...esaipysa.laqalareel...lrqlldeaesaeleawrekleeala........avpe 110
                 + + G  G GK++l+r l+   + dgg f +g +++    +      + la++    ++   +++++++ +  ++e  +++l e+++        +v++
  KIR65034.1 320 IAILGRNGAGKTTLLRLLAGITRPDGGRFHTGSTVKPaflS------QeLAELPGHLRVleaVEEVARRVQLGDREVSAAQLAEVFGfddrrlwtPVGD 412
                 7899***************8777778999999999983332......3344444333330004444444555555555555555555999999999999 PP

      AAA_16 111 lagaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrl 161
                 l+g   +r + ++ rll   +  e+ ++l+ +   ++d+++l++l+ Ll++
  KIR65034.1 413 LSGG--ERRRLQMLRLL---AA-EPNVLLFDEPTNDLDTDTLAALEDLLDS 457
                 9999..55555566777...33.333555555678***********99986 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 4.2
      AAA_16 107 avpelagaeasrllellkrllallsrderplvlvlD 142
                 a++ +++aea++   +l+rl +++++ e+    +lD
  KIR65034.1 525 ATGGMSAAEARQAKKELTRLERQIAKLEQREATLLD 560
                 444444444444444444444333333332333333 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.035        13      28      41 ..      35      48 ..      28      52 .. 0.86
   2 !    8.6   0.0    0.0031       1.2     137     202 ..     132     191 ..      89     207 .. 0.88
   3 ?    4.9   0.0     0.042        16      27      41 ..     320     334 ..     306     338 .. 0.86
   4 !    7.2   0.0     0.008         3     136     212 ..     412     483 ..     364     488 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.035
                EEEESTTSSHHHHH CS
                xxxxxxxxxxxxxx RF
       SMC_N 28 aivGpNGSGKsnll 41
                 +vG NG+GKs ll
  KIR65034.1 35 GVVGLNGAGKSTLL 48
                59*********987 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0031
                 S-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 137 LSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreeml 202
                 +SgGe+  vala l     v+ + l +lDe   +LD   v  +a+ l  ++    ++v+++++ +l
  KIR65034.1 132 MSGGERRRVALAAL----LVRESDLLILDEPTNHLDVGGVDWLAKHLVGRR--GALVVVTHDRWFL 191
                 9******9999877....489999*********************998888..6678888876655 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.042
                 EEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnll 41 
                  ai+G+NG+GK+ ll
  KIR65034.1 320 IAILGRNGAGKTTLL 334
                 58**********986 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.008
                 CS-HHHH.HHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-.SCEEEEE CS
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
       SMC_N 136 lLSgGek.tLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka.dklvgvt 212
                  LSgGe+  L +l Ll     ++p+ + l+De    LD    +++ +ll++      +iv s+++ ++e++ d  +g++
  KIR65034.1 412 DLSGGERrRLQMLRLLA----AEPN-VLLFDEPTNDLDTDTLAALEDLLDSWP--GTIIVASHDRYLIERVtDVAYGMF 483
                 59***973699999983....4555.569********************9988..889******999998867777765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.7e-05     0.014       1      22 [.      33      54 ..      33      67 .. 0.83
   2 !   11.8   0.0    0.0005      0.19       1      21 [.     319     339 ..     319     393 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.7e-05
                EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltge 22
                ++++vG   +GKStL++ lt++
  KIR65034.1 33 RIGVVGLNGAGKSTLLRMLTKQ 54
                699*****************97 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.0005
                 EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg 21 
                 ++ai+Gr  +GK+tL++ l g
  KIR65034.1 319 RIAILGRNGAGKTTLLRLLAG 339
                 69***************9987 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0095       3.6      23      41 ..      38      56 ..      27      67 .. 0.85
   2 !   12.4   0.0   0.00012     0.045      21      49 ..     322     349 ..     318     377 .. 0.81
   3 ?    3.0   3.2     0.083        31     282     336 ..     538     592 ..     529     600 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0095
      AAA_13 23 GwNGaGKTtLSrllrslel 41
                G NGaGK+tL r+l ++e 
  KIR65034.1 38 GLNGAGKSTLLRMLTKQED 56
                99************99864 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00012
      AAA_13  21 iYGwNGaGKTtLSrllrslelgetepkfa 49 
                 i G+NGaGKTtL rll+ +++     +f 
  KIR65034.1 322 ILGRNGAGKTTLLRLLAGITR-PDGGRFH 349
                 78***************9965.3344554 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.083
      AAA_13 282 eekqerLekliekveskkselleklkavsdeasensafeedkeelkaeaealeeq 336
                 +++  rLe+ i+k+e++++ ll++l+a ++++ +  + + + ++++ae e++ee+
  KIR65034.1 538 KKELTRLERQIAKLEQREATLLDQLAANATDYARVAELDAQLKDVRAEREQVEES 592
                 5667789999999999999999999999998888888999999999999888765 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.8e-07   0.00014       1      79 [.     199     275 ..     199     280 .. 0.86
   2 ?   -0.5   4.6       3.5   1.3e+03      32      53 ..     533     554 ..     528     591 .. 0.59

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 3.8e-07
  ABC_tran_Xtn   1 velengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLekl.ekiekpeek 79 
                   +e+ +++++ Y+G + ++   ++er++ ++++++++q+ ++k+ ++ +r     +++++ + r+ a + l +++ +p ++
    KIR65034.1 199 WEVADQTVRAYEGGFAAWTLARAERERVAAATEARRQNLLRKEIAWLRRGPP--ARTSKPKFRIDAANALiDDVPPP-RD 275
                   6999*********************************************997..67777778888777776666666.44 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 3.5
  ABC_tran_Xtn  32 ayekqqkeikkleefIerfrak 53 
                   ++++ +ke+ +le+ I+++ ++
    KIR65034.1 533 EARQAKKELTRLERQIAKLEQR 554
                   2333334444444444444432 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1    0.0029       1.1      25      39 ..      34      48 ..      22      52 .. 0.82
   2 !   14.2   0.0   7.1e-05     0.027      13      39 ..     308     334 ..     305     344 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0029
      AAA_29 25 tlltGpsGsGKSTll 39
                + ++G +G+GKSTll
  KIR65034.1 34 IGVVGLNGAGKSTLL 48
                5589**********8 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 7.1e-05
      AAA_29  13 dghtieidlkgatlltGpsGsGKSTll 39 
                 +++t+++ + + + + G++G+GK+Tll
  KIR65034.1 308 HDTTWQVGPGDRIAILGRNGAGKTTLL 334
                 67899999999***************8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00032      0.12      10      31 ..      36      57 ..      29     170 .. 0.85
   2 !    9.2   0.3    0.0038       1.4       8      27 ..     320     339 ..     317     468 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00032
      AAA_22 10 vtGesGtGKTtllrrlleqlde 31
                v+G  G+GK+tllr+l++q d 
  KIR65034.1 36 VVGLNGAGKSTLLRMLTKQEDP 57
                89*****************864 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0038
      AAA_22   8 lvvtGesGtGKTtllrrlle 27 
                 +++ G  G+GKTtllr l+ 
  KIR65034.1 320 IAILGRNGAGKTTLLRLLAG 339
                 6899************9975 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0     0.003       1.1       1      22 [.      34      55 ..      34      93 .. 0.81
   2 ?    7.7   0.0     0.013         5       1      19 [.     320     338 ..     320     374 .. 0.91
   3 ?    1.0   0.0       1.5   5.8e+02      48      89 ..     439     474 ..     424     508 .. 0.66
   4 ?   -0.5   0.0       4.5   1.7e+03      54     101 ..     534     577 ..     523     588 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.003
      AAA_18  1 IlltGtpGvGKttlakeLskrl 22
                I++ G  G+GK+tl + L k +
  KIR65034.1 34 IGVVGLNGAGKSTLLRMLTKQE 55
                89****************8875 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.013
      AAA_18   1 IlltGtpGvGKttlakeLs 19 
                 I++ G  G+GKttl + L+
  KIR65034.1 320 IAILGRNGAGKTTLLRLLA 338
                 899*************996 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 1.5
      AAA_18  48 eskrldedkldklldaleenssaleegknlvidghlaelese 89 
                 +++ ld+d l++l d+l+ ++      +++++ +h   l++ 
  KIR65034.1 439 PTNDLDTDTLAALEDLLDSWP------GTIIVASHDRYLIER 474
                 4788999999**********7......566777766555433 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 4.5
      AAA_18  54 edkldklldaleenssaleegknlvidghlaeleseaakdikkvvLta 101
                   + +k l+ le+++++le+ +  ++d++ a+  ++a++      L+a
  KIR65034.1 534 ARQAKKELTRLERQIAKLEQREATLLDQLAANATDYARV----AELDA 577
                 456667788888888889999999999999999888776....45555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.019       7.2       2      27 ..      34      64 ..      33      90 .. 0.78
   2 !   14.0   0.1   0.00012     0.044       1      80 [.     319     404 ..     319     439 .. 0.75
   3 ?    0.0   0.7       2.4   8.9e+02      56     102 ..     540     581 ..     517     600 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.019
      AAA_28  2 ivitGgestGKTtlleaLaar.....gypvv 27
                i ++G  ++GK+tll+ L+++     g +++
  KIR65034.1 34 IGVVGLNGAGKSTLLRMLTKQedpddGRVTH 64
                6688999***********9765555566555 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 0.00012
      AAA_28   1 kivitGgestGKTtlleaLa..ar..gypvv..pEaareileeklakgedalpwvedllafaervleeqleeeaaaaankvlfcDr 80 
                 +i+i+G  ++GKTtll+ La   r  g + +    +   +l+++la+  ++l+  e + ++a+rv    +e  aa+ a+ + f Dr
  KIR65034.1 319 RIAILGRNGAGKTTLLRLLAgiTRpdGGRFHtgSTVKPAFLSQELAELPGHLRVLEAVEEVARRVQLGDREVSAAQLAEVFGFDDR 404
                 79******************663467444333477777888888888888888766777777766555555555555555555555 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 2.4
      AAA_28  56 aervleeqleeeaaaaankvlfcDrglldtlaYarayggeaeaelea 102
                 +  +le    + a+ ++++ +++D  + + + Yar+ + +  a+l++
  KIR65034.1 540 ELTRLER---QIAKLEQREATLLDQLAANATDYARVAELD--AQLKD 581
                 2333333...334446778889999999999999998887..33333 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.8e-05     0.014      11      51 ..      13      53 ..       3      63 .. 0.85
   2 ?    6.1   0.0     0.012       4.6      15      53 ..     303     341 ..     290     350 .. 0.85
   3 ?   -2.7   0.2       6.1   2.3e+03     209     249 ..     550     590 ..     527     599 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.8e-05
                -SHHHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHH CS
        MeaB 11 erpeakellerllakaGraqvvGltGvPGaGkstlvealgl 51
                 + +a  ll+ ++     a ++G+ G+ GaGkstl+  l+ 
  KIR65034.1 13 GYGAAGPLLTDVSLGLDDADRIGVVGLNGAGKSTLLRMLTK 53
                556788899999999999******************99886 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.012
                 HHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHH CS
        MeaB  15 akellerllakaGraqvvGltGvPGaGkstlvealglel 53 
                  ke+l+  + + G   ++ + G  GaGk tl+  l+   
  KIR65034.1 303 PKEILHDTTWQVGPGDRIAILGRNGAGKTTLLRLLAGIT 341
                 589999999**********************98776555 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 6.1
                 EEBCCCTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH CS
        MeaB 209 ktsavegeGidelvdaieehrevlkktGllekrrrerakee 249
                 k    e   +d+l+++ +++++v++   +l+  r er++ e
  KIR65034.1 550 KLEQREATLLDQLAANATDYARVAELDAQLKDVRAEREQVE 590
                 44445555577777777788777777777777766665543 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0022      0.83      24      39 ..      36      51 ..      31      52 .. 0.88
   2 !    8.5   8.3    0.0067       2.5      23     154 ..     321     533 ..     317     599 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0022
      AAA_23 24 ItGpNGaGKTTildAi 39
                ++G NGaGK+T+l+ +
  KIR65034.1 36 VVGLNGAGKSTLLRML 51
                68***********877 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0067
      AAA_23  23 lItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgrytrsiererelskkkgkttkkaklelleideleqfi 121
                 +I G NGaGKTT+l+ +  ++  +    +r + ++ +k  +  +  ++ ++ +++ +e   +     + r+ +l + + +  + a+ ++++++ l+  +
  KIR65034.1 321 AILGRNGAGKTTLLRLLAGITRPD---GGRFHTGSTVKPAFLSQELAELPGHLRV-LEAVEE-----VARRVQLGDREVSAAQLAEVFGFDDRRLWTPV 410
                 79************9998776543...3333334445555554444555555555.334333.....55555666666666666666666666666666 PP

      AAA_23 122 sellgskkiilnlilflgqer.........feefelkdkke.......................................................... 153
                  +l g + ++l+++ +l++e          +         +                                                          
  KIR65034.1 411 GDLSGGERRRLQMLRLLAAEPnvllfdeptN---------Dldtdtlaaledlldswpgtiivashdryliervtdvaygmfgdgrlvhlpggvdeyla 500
                 6666666666666666666654443322220.........12222333333344455555555555555555555566666666666666666666666 PP

      AAA_23 154 ................................r 154
                                                 +
  KIR65034.1 501 raadrqpaapaaptgptadgtpaaatggmsaaE 533
                 666666666666666666666666666665552 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   0.00034      0.13      15      38 ..      32      55 ..      23      60 .. 0.86
   2 !    7.1   0.1     0.009       3.4      16      34 ..     319     337 ..     308     341 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00034
                EEEEEEESTTSSHHHHHHHHHHSS CS
         Arf 15 lrilllGLDnaGKtTilkklklee 38
                 ri ++GL +aGK+T+l +l+++e
  KIR65034.1 32 DRIGVVGLNGAGKSTLLRMLTKQE 55
                58889***************9875 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.009
                 EEEEEESTTSSHHHHHHHH CS
         Arf  16 rilllGLDnaGKtTilkkl 34 
                 ri +lG  +aGKtT+l  l
  KIR65034.1 319 RIAILGRNGAGKTTLLRLL 337
                 899************9876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0018      0.68     103     131 ..      35      63 ..      21      68 .. 0.81
   2 !    7.7   0.0     0.008         3     100     121 ..     318     339 ..     281     365 .. 0.86
   3 ?   -1.2   0.2       4.4   1.7e+03      68      98 ..     537     567 ..     529     589 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0018
                  EEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpelelktgevs 131
                   +vG  G+GKStL+ +l+ +++   g v 
   KIR65034.1  35 GVVGLNGAGKSTLLRMLTKQEDPDDGRVT 63 
                  5799**************99887766665 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.008
                  SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallp 121
                  + ++++G  G+GK+tL+  l++
   KIR65034.1 318 DRIAILGRNGAGKTTLLRLLAG 339
                  567899***********99986 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 4.4
                  HHHHHHHTTSEEEE--TTTHTTHHHHHHHCT CS
  RsgA_GTPase  68 lkeelealgyevllvsaktkegleelkellk 98 
                   k+el++l+ ++ ++++++ + l++l+++ +
   KIR65034.1 537 AKKELTRLERQIAKLEQREATLLDQLAANAT 567
                  4444444444444444444444444444333 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.029        11       3      22 ..      34      53 ..      32      90 .. 0.82
   2 !   10.7   0.0     0.001      0.38       2      21 ..     319     338 ..     318     344 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.029
                EEEEC-TTTCHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklal 22
                + + G +G GK+tLl+ l  
  KIR65034.1 34 IGVVGLNGAGKSTLLRMLTK 53
                5689***********98864 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.001
                 CEEEEC-TTTCHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkla 21 
                  +++ G++G GKTtLl+ la
  KIR65034.1 319 RIAILGRNGAGKTTLLRLLA 338
                 689*************9776 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0022      0.82       4      25 ..      35      56 ..      33      63 .. 0.83
   2 ?    6.3   0.1     0.018       6.6       5      20 ..     322     337 ..     319     348 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0022
                EEEESTTCCHHHHHHHHHCT-- CS
        cobW  4 vltGflGsGKTtLlnhllenra 25
                +++G  G+GK+tLl+ l+++++
  KIR65034.1 35 GVVGLNGAGKSTLLRMLTKQED 56
                799*************996654 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.018
                 EEESTTCCHHHHHHHH CS
        cobW   5 ltGflGsGKTtLlnhl 20 
                 + G  G+GKTtLl+ l
  KIR65034.1 322 ILGRNGAGKTTLLRLL 337
                 77889********976 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00062      0.23       4      23 ..      36      55 ..      34      66 .. 0.87
   2 ?    4.7   0.0     0.082        31       4      20 ..     322     338 ..     320     344 .. 0.85
   3 ?   -1.0   0.2       4.9   1.8e+03      54      89 ..     539     573 ..     518     593 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00062
      AAA_33  4 lvGlpGsGKstlaerllkkl 23
                +vGl+G+GKstl++ l k++
  KIR65034.1 36 VVGLNGAGKSTLLRMLTKQE 55
                79************999886 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.082
      AAA_33   4 lvGlpGsGKstlaerll 20 
                 + G +G+GK+tl++ l+
  KIR65034.1 322 ILGRNGAGKTTLLRLLA 338
                 56999*******99776 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 4.9
      AAA_33  54 rlyqilnelarkalsagrnvildatnlsrrerarfl 89 
                 +   +l++ ++ +l+++ +++ld+  +++ + ar+ 
  KIR65034.1 539 KELTRLERQIA-KLEQREATLLDQLAANATDYARVA 573
                 33445555553.466666666666544444444433 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.084        31      26      47 ..     125     146 ..     119     168 .. 0.73
   2 ?    6.4   0.3     0.027        10      28      83 ..     408     450 ..     396     457 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.084
     SbcCD_C  26 lsrssgtlSGGekqflaylala 47 
                 l++ +g +SGGe++ +a  al+
  KIR65034.1 125 LDQPVGPMSGGERRRVALAALL 146
                 6788999******776666655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.027
     SbcCD_C  28 rssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiat 83 
                 + +g lSGGe++ l +l l+aa              + ++++DE  + lD +++a+
  KIR65034.1 408 TPVGDLSGGERRRLQMLRLLAA-------------EPNVLLFDEPTNDLDTDTLAA 450
                 6778888888888888888765.............345556666666666666555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0      0.03        11      14      45 ..      24      53 ..      13      55 .. 0.83
   2 !    7.7   0.1     0.009       3.4      25      43 ..     319     337 ..     317     341 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.03
       DUF87 14 vyldlnklvtrHlAilgsTGsGKSntvavLle 45
                v+l l+ +   +++++g  G+GKS++ + L +
  KIR65034.1 24 VSLGLDDA--DRIGVVGLNGAGKSTLLRMLTK 53
                56666555..789***************9976 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.009
       DUF87  25 HlAilgsTGsGKSntvavL 43 
                 ++Ailg+ G+GK+++ ++L
  KIR65034.1 319 RIAILGRNGAGKTTLLRLL 337
                 68**************998 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.053        20       4      22 ..      33      51 ..      30      58 .. 0.85
   2 ?    8.0   0.0    0.0058       2.2       4      22 ..     319     337 ..     317     349 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.053
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                +i ++G +g+GK+tl+++l
  KIR65034.1 33 RIGVVGLNGAGKSTLLRML 51
                799*************998 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0058
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 +i+i G +g+GKTtl++ l
  KIR65034.1 319 RIAILGRNGAGKTTLLRLL 337
                 89*************9876 PP

>> Wbp11  WW domain binding protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   2.6   0.00014     0.051      29      77 ..     531     583 ..     528     584 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 0.00014
       Wbp11  29 areaklakkdpdeleeeiekLeelessg..kldaa..dkkklekLekelkavk 77 
                 a ea+ akk +++le++i+kLe+ e++   +l a+  d  ++++L ++lk+v+
  KIR65034.1 531 AAEARQAKKELTRLERQIAKLEQREATLldQLAANatDYARVAELDAQLKDVR 583
                 678999***************9888875545555577999********99985 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.037        14       2      25 ..      34      57 ..      33      80 .. 0.83
   2 ?    7.0   0.0     0.018       6.7       1      20 [.     319     338 ..     319     367 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.037
                EEEESSTTSSHHHHHHCHCT-CCC CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfs 25
                + +vG +g+GK++ll+ +++++  
  KIR65034.1 34 IGVVGLNGAGKSTLLRMLTKQEDP 57
                679*************99987654 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.018
                 EEEEESSTTSSHHHHHHCHC CS
         Roc   1 KvvlvGdsgvGKtsllkrfv 20 
                 ++ ++G +g+GKt+ll+ + 
  KIR65034.1 319 RIAILGRNGAGKTTLLRLLA 338
                 589************98765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0077       2.9      21      47 ..      36      62 ..      32      71 .. 0.81
   2 ?    4.3   0.0     0.056        21      21      38 ..     322     339 ..     306     349 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0077
  Zeta_toxin 21 lgGqpGAGKselaellkdelerqgnvv 47
                ++G  GAGKs+l+++l+++ +++++ v
  KIR65034.1 36 VVGLNGAGKSTLLRMLTKQEDPDDGRV 62
                67999***********99987666555 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.056
  Zeta_toxin  21 lgGqpGAGKselaellkd 38 
                 + G  GAGK++l++ll+ 
  KIR65034.1 322 ILGRNGAGKTTLLRLLAG 339
                 55999********99876 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.012       4.6      19      43 ..      32      54 ..      24      80 .. 0.84
   2 ?    5.2   0.1     0.027        10      22      38 ..     319     335 ..     309     346 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.012
                CSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 19 qslvvalvGmgGvGKttlakqilnk 43
                +   +++vG  G GK+tl++   ++
  KIR65034.1 32 D--RIGVVGLNGAGKSTLLRMLTKQ 54
                4..799************9988776 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.027
                 EEEEEESTTSSHHHHHH CS
      NB-ARC  22 vvalvGmgGvGKttlak 38 
                  +a+ G+ G GKttl++
  KIR65034.1 319 RIAILGRNGAGKTTLLR 335
                 589***********986 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.021       7.7      28      43 ..      36      51 ..      20      59 .. 0.82
   2 ?    6.0   0.0     0.022       8.3      27      43 ..     321     337 ..     317     344 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.021
      AAA_15 28 liGkNnsGKSsileal 43
                ++G N++GKS++l++l
  KIR65034.1 36 VVGLNGAGKSTLLRML 51
                89************99 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.022
      AAA_15  27 vliGkNnsGKSsileal 43 
                  + G+N++GK+++l++l
  KIR65034.1 321 AILGRNGAGKTTLLRLL 337
                 588***********998 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0032       1.2      15      37 ..      29      51 ..      25      52 .. 0.86
   2 ?   12.1   0.1     7e-05     0.026      16      37 ..     316     337 ..     306     338 .. 0.83
   3 ?   -1.1   4.7      0.66   2.5e+02     680     730 ..     535     587 ..     524     600 .. 0.35

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0032
     DUF3584 15 dldghtnieGtNaaGKTtLlrLi 37
                d  ++  ++G N+aGK tLlr++
  KIR65034.1 29 DDADRIGVVGLNGAGKSTLLRML 51
                55678889*************86 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 7e-05
     DUF3584  16 ldghtnieGtNaaGKTtLlrLi 37 
                 + ++  i G N+aGKTtLlrL+
  KIR65034.1 316 PGDRIAILGRNGAGKTTLLRLL 337
                 568899***************7 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.66
     DUF3584 680 qqaeeqlqkldaqlkqleeqqkaaleelkedlse.er.lekkakwqevvgeld 730
                 +qa+++l+ l+ q+  le+ ++ +l +l+ ++ + +r  e  a++++v +e++
  KIR65034.1 535 RQAKKELTRLERQIAKLEQREATLLDQLAANATDyARvAELDAQLKDVRAERE 587
                 23333333333333333333333333332222210110111222222222222 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   3.4   0.00016     0.059      44      96 ..     536     591 ..     497     599 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00016
      APG6_N  44 kqdeeleeleeeleklekeeeelleeLkeleker...eeleaelaaleeelealee 96 
                 + ++el +le++++kle+ e++ll +L++  +     +el+a+l++ ++e e++ee
  KIR65034.1 536 QAKKELTRLERQIAKLEQREATLLDQLAANATDYarvAELDAQLKDVRAEREQVEE 591
                 256899999******************98876551126788899999988888876 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.069        26       2      22 ..      34      54 ..      33      64 .. 0.84
   2 ?    7.2   0.0     0.012       4.5       2      24 ..     320     342 ..     319     357 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.069
        MobB  2 lgivgksgsGKTtLleklipe 22
                +g+vg +g+GK tLl  l ++
  KIR65034.1 34 IGVVGLNGAGKSTLLRMLTKQ 54
                799************999876 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.012
        MobB   2 lgivgksgsGKTtLleklipelk 24 
                 ++i g++g+GKTtLl  l  + +
  KIR65034.1 320 IAILGRNGAGKTTLLRLLAGITR 342
                 6899***********98866555 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   2.5   0.00026     0.099      58     112 ..     533     589 ..     524     596 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00026
  TMF_TATA_bd  58 elkelkkeleelekeleelqeryetlLellGeks.E..eveELraDvaDlKemykeqv 112
                  e +++kkel+ le+++++l++r+ tlL  l   + +  +v EL a ++D+++  +eqv
   KIR65034.1 533 EARQAKKELTRLERQIAKLEQREATLLDQLAANAtDyaRVAELDAQLKDVRAE-REQV 589
                  44555555555555555555555555544443321122455555555555542.3333 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.8    0.0027         1      23     133 ..      36     196 ..      29     250 .. 0.65
   2 ?    9.7   0.2    0.0017      0.65      22      49 ..     321     348 ..     314     457 .. 0.83
   3 ?   -0.2   0.6       1.8   6.8e+02     142     175 ..     532     568 ..     499     586 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0027
      AAA_30  23 ltGpAGtGKttalkalreaweaa.g.............grviglAptgkaAkv.Laeelgieastiakllkrlk......................... 81 
                 ++G  G+GK+t+l+ l++  + + g              + + lAp++++ +v L+++   +++  ++ +   +                         
  KIR65034.1  36 VVGLNGAGKSTLLRMLTKQEDPDdGrvthrrdlrvlwlPQALTLAPEATVRDVvLGTAWLGQSMGAEHEWAGDAgvraildglgmphlgldqpvgpmsg 134
                 79**************87777664689999998888888888889988888885664433344433332222224666666666777777777778888 PP

      AAA_30  82 ........grarlepgtllivDEag.mvdtkqlaallkaaek.agakvilvGDerQlasVea 133
                         ++  +++++lli DE    +d   ++ l+k++   +ga v++  D+  l++V +
  KIR65034.1 135 gerrrvalAALLVRESDLLILDEPTnHLDVGGVDWLAKHLVGrRGALVVVTHDRWFLDAVCT 196
                 88888887556666778888888541558888888887765525677777777777777755 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0017
      AAA_30  22 vltGpAGtGKttalkalreaweaaggrv 49 
                 ++ G+ G+GKtt+l+ l+ + + +ggr 
  KIR65034.1 321 AILGRNGAGKTTLLRLLAGITRPDGGRF 348
                 578***************9999887554 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.8
      AAA_30 142 eaagigtaeLtevvRq...keseeraaalalregdae 175
                 ++a++   eLt + Rq    e++e+++ ++l+ + ++
  KIR65034.1 532 AEARQAKKELTRLERQiakLEQREATLLDQLAANATD 568
                 2356677777777777532234555555555555555 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.24        91      26      55 ..      32      61 ..      21      70 .. 0.86
   2 ?    7.6   0.0    0.0039       1.5      25      55 ..     317     347 ..     305     350 .. 0.87
   3 ?   -1.3   0.3       1.9   7.2e+02     415     461 ..     510     550 ..     499     566 .. 0.46

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.24
        DLIC 26 ksvlvlGedgsGkttliaklqGveeekkGr 55
                  + v+G +g+Gk+tl+  l   e++  Gr
  KIR65034.1 32 DRIGVVGLNGAGKSTLLRMLTKQEDPDDGR 61
                567799*******************99998 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0039
        DLIC  25 gksvlvlGedgsGkttliaklqGveeekkGr 55 
                 g  + +lG +g+Gkttl+  l G+  +  Gr
  KIR65034.1 317 GDRIAILGRNGAGKTTLLRLLAGITRPDGGR 347
                 66799******************99887776 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.9
        DLIC 415 Pgsagagggaaagrgsnvqdsvkksgkkavltdvqaeldrlsrkvdk 461
                 P+++++ ++ ++      + +++   + a   ++++el rl r+  k
  KIR65034.1 510 PAAPTGPTADGT------PAAATGGMSAAEARQAKKELTRLERQIAK 550
                 333333222222......22222222223333445555555554443 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.069        26      14      41 ..      31      58 ..      21      73 .. 0.86
   2 ?    5.9   0.0     0.024       9.1       7      35 ..     310     338 ..     307     347 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.069
                 T-EEEEEESTTSSHHHHHHHHHHHSSTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 14 GqrtlipgafgvGktvisqslskqsnsd 41
                   r++++g +g Gk++++++l+kq + d
   KIR65034.1 31 ADRIGVVGLNGAGKSTLLRMLTKQEDPD 58
                 57999******************97655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.024
                  HHS-EBTT-EEEEEESTTSSHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   7 alfpivqGqrtlipgafgvGktvisqsls 35 
                  +   ++ G r++i+g +g Gkt++++ l+
   KIR65034.1 310 TTWQVGPGDRIAILGRNGAGKTTLLRLLA 338
                  5666889****************997765 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.017       6.4       2      21 ..      35      54 ..      34      59 .. 0.87
   2 ?    4.3   0.1     0.086        32       1      19 [.     320     338 ..     320     342 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.017
                EEEESTTSSHHHHHHHHHCC CS
         dNK  2 vveGnIgaGKstlvklLskk 21
                 v G  gaGKstl+ +L+k+
  KIR65034.1 35 GVVGLNGAGKSTLLRMLTKQ 54
                577999***********998 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.086
                 EEEEESTTSSHHHHHHHHH CS
         dNK   1 ivveGnIgaGKstlvklLs 19 
                 i++ G  gaGK+tl+ lL+
  KIR65034.1 320 IAILGRNGAGKTTLLRLLA 338
                 7889999*********997 PP

>> Med21  Subunit 21 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.2   0.00056      0.21      25     134 ..     498     599 ..     496     602 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00056
       Med21  25 ylntshdpsplseqdpsspsaapalakipqeekeepepdspeefaatqrelardlilkeqqIeyLIssLPgigsseeeqeerikeLeeelreveeeree 123
                 yl + +d +p+ +  p+ p+a  + a+++       ++ ++++ ++++  l r++++ eq+  +L ++L      +++  +r++eL+++l++v++ere+
  KIR65034.1 498 YLARAADRQPAAPAAPTGPTADGTPAAAT----GGMSAAEARQAKKELTRLERQIAKLEQREATLLDQL----AANATDYARVAELDAQLKDVRAEREQ 588
                 88999999999999998888888777666....78888999999************************9....567999*******************9 PP

       Med21 124 kvkekeellkk 134
                 + +   +l ++
  KIR65034.1 589 VEESWLALAEQ 599
                 87766666555 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0075       2.8      15      47 ..      22      52 ..      14      54 .. 0.76
   2 ?   -0.7   0.0       2.4   8.9e+02     120     140 ..     289     309 ..     268     315 .. 0.86
   3 ?    4.0   0.0     0.084        32      31      44 ..     322     335 ..     309     341 .. 0.87
   4 ?   -2.3   1.7       7.2   2.7e+03     150     195 ..     536     584 ..     525     592 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0075
      AAA_27 15 tdrsldfsaeeadlhliyGpNEAGKstalrAis 47
                td sl ++  +ad   ++G N AGKst+lr ++
  KIR65034.1 22 TDVSLGLD--DADRIGVVGLNGAGKSTLLRMLT 52
                56666665..44555589***********9765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.4
      AAA_27 120 ealFgLdherLreGGeallea 140
                 ++++ L+h rL++G +++l+ 
  KIR65034.1 289 KQVYDLEHVRLHAGPKEILHD 309
                 68899*************985 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.084
      AAA_27  31 iyGpNEAGKstalr 44 
                 i+G N AGK+t+lr
  KIR65034.1 322 ILGRNGAGKTTLLR 335
                 89*********998 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 7.2
      AAA_27 150 easaGlaslrevleaLeaeadelfkprkskk...rainealeeleeakk 195
                 +a+  l++l++ +++Le++  +l ++ +++    ++++e  ++l+++++
  KIR65034.1 536 QAKKELTRLERQIAKLEQREATLLDQLAANAtdyARVAELDAQLKDVRA 584
                 4555667777777777777777777666655122333333344444333 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.018       6.7       1      22 [.      34      55 ..      34      70 .. 0.86
   2 ?    3.3   0.0       0.2        74       1      22 [.     320     341 ..     320     362 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.018
                EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlged 22
                i vvG   +GKS++l  L++++
  KIR65034.1 34 IGVVGLNGAGKSTLLRMLTKQE 55
                78**************999876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.2
                 EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlged 22 
                 ia++G   +GK+++l  L g  
  KIR65034.1 320 IAILGRNGAGKTTLLRLLAGIT 341
                 899************9999976 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.39   1.5e+02      23      42 ..      35      54 ..      17      63 .. 0.80
   2 ?    7.7   0.0    0.0091       3.4      19      40 ..     317     338 ..     282     344 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.39
                EEEESTTSSHHHHHHHHHHH CS
        TsaE 23 lLeGdLGaGKTtlvrglaka 42
                   G  GaGK+tl r l k+
  KIR65034.1 35 GVVGLNGAGKSTLLRMLTKQ 54
                566777*********99876 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0091
                 TEEEEEEESTTSSHHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrgla 40 
                 gd i++ G  GaGKTtl r la
  KIR65034.1 317 GDRIAILGRNGAGKTTLLRLLA 338
                 5569999***********9876 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.068        25       6      22 ..      36      52 ..      32      60 .. 0.84
   2 ?    7.0   0.0     0.011         4       4      25 ..     320     341 ..     318     350 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.068
                EEESTTSSHHHHHHHHH CS
       SRP54  6 lvGlqGaGKTttlaKLa 22
                +vGl+GaGK t l  L 
  KIR65034.1 36 VVGLNGAGKSTLLRMLT 52
                8**********987665 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.011
                 EEEEESTTSSHHHHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLaall 25 
                 i+++G +GaGKTt l  La + 
  KIR65034.1 320 IAILGRNGAGKTTLLRLLAGIT 341
                 7899**********99998765 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.064        24       1      17 [.      37      53 ..      37      58 .. 0.87
   2 ?    2.8   0.0      0.39   1.5e+02       1      16 [.     323     338 ..     323     434 .. 0.76
   3 ?    0.4   0.2       2.1   7.9e+02      35      64 ..     537     566 ..     519     589 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.064
                EE-TTSSHHHHHHHHHH CS
      AAA_17  1 lGgPGsGKgtqceklve 17
                +G+ G+GK+t+++ l +
  KIR65034.1 37 VGLNGAGKSTLLRMLTK 53
                79**********98876 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.39
                 EE-TTSSHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklv 16 
                 lG  G+GK+t+++ l+
  KIR65034.1 323 LGRNGAGKTTLLRLLA 338
                 5889*******96665 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 2.1
                 HTTTSHSSHHHHCTSHHHHHHHHHHHHHHH CS
      AAA_17  35 krgglakardemrklpleekkelqkeaaek 64 
                 ++++l + + +++kl+++e   l+++aa++
  KIR65034.1 537 AKKELTRLERQIAKLEQREATLLDQLAANA 566
                 233455555556666666666555555544 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.055        20       6      27 ..      35      56 ..      32      68 .. 0.85
   2 ?    2.8   0.1      0.31   1.2e+02       5      23 ..     320     338 ..     317     345 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.055
      AAA_14  6 vitGaRrvGKTtllkqlikell 27
                 ++G+  +GK+tll+ l k++ 
  KIR65034.1 35 GVVGLNGAGKSTLLRMLTKQED 56
                6899***********9998875 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.31
      AAA_14   5 lvitGaRrvGKTtllkqli 23 
                 ++i G   +GKTtll+ l+
  KIR65034.1 320 IAILGRNGAGKTTLLRLLA 338
                 67899999*******9876 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.7    0.0011      0.42      23      86 ..     535     600 ..     526     602 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0011
        YlqD  23 qqlqaqieqldkelqqLefqakrlikeikkqsaq..qieeiqeqvekekserlekkkqllqqleqv 86 
                 +q ++++++l++++++Le+ +  l+++++ + ++  +++e+ +q++  ++er++  ++ l+  eqv
  KIR65034.1 535 RQAKKELTRLERQIAKLEQREATLLDQLAANATDyaRVAELDAQLKDVRAEREQVEESWLALAEQV 600
                 688899999***************9999987666889*****************999999888887 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.33   1.2e+02       3      25 ..      33      55 ..      31      56 .. 0.87
   2 ?    6.9   0.1     0.013       4.9       3      23 ..     319     339 ..     317     342 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.33
   PduV-EutP  3 killiGkvgsGKttLtqalkgee 25
                +i ++G  g+GK tL + l+++e
  KIR65034.1 33 RIGVVGLNGAGKSTLLRMLTKQE 55
                67799************998875 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.013
   PduV-EutP   3 killiGkvgsGKttLtqalkg 23 
                 +i ++G+ g+GKttL + l g
  KIR65034.1 319 RIAILGRNGAGKTTLLRLLAG 339
                 7999***********998865 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.0    0.0017      0.63     123     183 ..     532     595 ..     526     599 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0017
      DUF724 123 sekrkleeeidelekkilelerqlallk...ekkeaadkeiarlkseaekleeeledveqeFea 183
                 +e r++++e+  le++i++le+++a+l    + + ++ +++a+l ++ ++++ e e+ve++  a
  KIR65034.1 532 AEARQAKKELTRLERQIAKLEQREATLLdqlAANATDYARVAELDAQLKDVRAEREQVEESWLA 595
                 5678899*****************9998888889999999999999999999999999988765 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   5.0    0.0059       2.2      19      82 ..     531     593 ..     525     598 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0059
      CENP-H  19 sqelrelqeeltevekenlrlkrknrelaaellelakekesek.eklkeelekleaelkksrqrw 82 
                 ++e r++++elt++e+++ +l++++++l+ +l   a+++++ +  +l+++l+ ++ae ++ ++ w
  KIR65034.1 531 AAEARQAKKELTRLERQIAKLEQREATLLDQL--AANATDYARvAELDAQLKDVRAEREQVEESW 593
                 57899***************************..5555555566689999999999999888887 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       6.2   2.3e+03      55      64 ..     374     382 ..     360     385 .. 0.83
   2 ?   10.3   3.2    0.0012      0.45      14      59 ..     529     574 ..     523     575 .. 0.87
   3 ?    1.4   0.2      0.71   2.7e+02      26      45 ..     572     591 ..     570     597 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 6.2
                 XXXXXXXXXX CS
       DivIC  55 dyieerARse 64 
                 +++ee+AR +
  KIR65034.1 374 EAVEEVAR-R 382
                 89******.4 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0012
                 XXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXX CS
       DivIC  14 kgllaykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyiee 59 
                  +    +q k+e+++l++++akl ++++ L ++++    d+++++e
  KIR65034.1 529 MSAAEARQAKKELTRLERQIAKLEQREATLLDQLAANATDYARVAE 574
                 566677899*********************9999999899999987 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.71
                 HHHHHHHHHHHHHHHHHHHH CS
       DivIC  26 iaalqaelaklkaeneeLea 45 
                 +a+l a+l+ ++ae+e+ e+
  KIR65034.1 572 VAELDAQLKDVRAEREQVEE 591
                 78888888888888888775 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.035        13       3      18 ..      38      53 ..      36      65 .. 0.90
   2 ?    3.9   0.1     0.097        36       3      18 ..     324     339 ..     322     350 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.035
                     ESTTSSHHHHHHHHHH CS
  Thymidylate_kin  3 GlDGaGKttqaellke 18
                     Gl+GaGK+t +++l +
       KIR65034.1 38 GLNGAGKSTLLRMLTK 53
                     9***********9987 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.097
                      ESTTSSHHHHHHHHHH CS
  Thymidylate_kin   3 GlDGaGKttqaellke 18 
                      G +GaGKtt ++ll+ 
       KIR65034.1 324 GRNGAGKTTLLRLLAG 339
                      789*********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1018  (0.0567795); expected 358.6 (0.02)
Passed bias filter:                      721  (0.0402142); expected 358.6 (0.02)
Passed Vit filter:                       154  (0.00858944); expected 17.9 (0.001)
Passed Fwd filter:                        49  (0.002733); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              48  [number of targets reported over threshold]
# CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.49
# Mc/sec: 3731.45
//
Query:       KIR65035.1  [L=151]
Description: hypothetical protein TK50_05810 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-09   37.8  16.3    2.2e-09   37.6  16.3    1.0  1  DUF4383      Domain of unknown function (DUF4383)


Domain annotation for each model (and alignments):
>> DUF4383  Domain of unknown function (DUF4383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6  16.3   1.2e-13   2.2e-09       2     123 ..      16     131 ..      15     132 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1.2e-13
     DUF4383   2 vlallvGlvfllvGvlGfiPgltseydelalageasgakllglfqvnllhnlvhllvGvlglaaa.rsasgarlyllllgvvylllailgllvldktan 99 
                  + +lvGl+fl++GvlG++      +++ +++ ++++ ++lg   +nl ++l+++++G+++la+   + ++  +++ +l+++ ++l++  l+ l+++an
  KIR65035.1  16 AIGGLVGLYFLVFGVLGLV------ASAGNDFLAQDDTTVLG-QGTNLGFSLLSIVLGIAILAGTvIGRNLDVAINQWLAYALMVLGLAELAFLQTDAN 107
                 66789**************......6788999999999****.69*******************999******************************** PP

     DUF4383 100 llplngadnwlhlllalvllalgl 123
                 ++++  +++++ l l++vll+ g+
  KIR65035.1 108 IFNFTITTDIVVLTLSMVLLMAGM 131
                 ********************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.50
# Mc/sec: 903.51
//
Query:       KIR65036.1  [L=156]
Description: hypothetical protein TK50_05815 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-19   68.9  17.2    5.2e-19   68.7  17.2    1.1  1  DUF4383   Domain of unknown function (DUF4383)
      0.001   19.3  16.0       0.64   10.4   8.9    3.1  3  DUF308    Short repeat of unknown function (DUF308)
      0.003   17.6   6.9      0.003   17.6   6.9    1.5  2  CD20      CD20-like family
  ------ inclusion threshold ------
        1.6    9.1   9.4       0.77   10.1   6.5    1.7  2  DUF4199   Protein of unknown function (DUF4199)
        2.3    8.2   9.2        4.2    7.4   6.3    2.3  3  DUF2700   Protein of unknown function (DUF2700)
        3.9    7.6  22.8        3.8    7.6   3.5    3.2  3  DUF2892   Protein of unknown function (DUF2892)


Domain annotation for each model (and alignments):
>> DUF4383  Domain of unknown function (DUF4383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7  17.2   1.8e-22   5.2e-19       1     123 [.      15     131 ..      15     132 .. 0.95

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 1.8e-22
     DUF4383   1 rvlallvGlvfllvGvlGfiPgltseydelalageasgakllglfqvnllhnlvhllvGvlglaaa.rsasgarlyllllgvvylllailgllvldkta 98 
                 rvla+lvGl++ll+Gv G +       +  +  ++++ +  lg +++nl+++lv++++G+++l++a r+++++++++l++g+v+l+++ l+++vl+++a
  KIR65036.1  15 RVLAGLVGLYILLFGVWGTA------ETWGEGLFDRGSHWALG-LRTNLAFSLVSVAFGIVLLIGAsRRTNLGHYMNLTAGAVFLVTGTLMMAVLQTPA 106
                 89******************......55677888888888999.8*******************998******************************** PP

     DUF4383  99 nllplngadnwlhlllalvllalgl 123
                 n+l++++++++++ll++lvlla+gl
  KIR65036.1 107 NFLNFSMSTVIVSLLFGLVLLATGL 131
                 **********************997 PP

>> DUF308  Short repeat of unknown function (DUF308)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   8.9   0.00021      0.64      23      73 .]      16      71 ..      12      71 .. 0.89
   2 !   10.1   2.6   0.00027      0.81      27      72 ..      57      99 ..      54     100 .. 0.80
   3 !    8.1   0.1    0.0011       3.2      19      38 ..     113     132 ..     106     142 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00021
      DUF308 23 alvllfGilllvsGivqiiaafaarkknrggrw.....lglllGilyliaGllllf 73
                +l+ l+G+++l++G+++ ++++    + rg+ w       l+++++++++G++ll+
  KIR65036.1 16 VLAGLVGLYILLFGVWGTAETWGEGLFDRGSHWalglrTNLAFSLVSVAFGIVLLI 71
                7889******************9999999999986655666************985 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00027
      DUF308 27 lfGilllvsGivqiiaafaarkknrggrwlglllGilyliaGllll 72
                 f ++ +++Giv +i+a   r+ ++ g  + l+ G+++l+ G l++
  KIR65036.1 57 AFSLVSVAFGIVLLIGAS--RR-TNLGHYMNLTAGAVFLVTGTLMM 99
                57788899*******888..33.44445589***********9997 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0011
      DUF308  19 aallalvllfGilllvsGiv 38 
                 +++++++llfG++ll+ G++
  KIR65036.1 113 MSTVIVSLLFGLVLLATGLY 132
                 6788899999*****99987 PP

>> CD20  CD20-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.9   5.7e+03     133     146 ..      16      29 ..      12      31 .. 0.55
   2 !   17.6   6.9     1e-06     0.003       6      76 ..      55     125 ..      49     135 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.9
        CD20 133 ilavlliltilell 146
                 +la l+ l+il + 
  KIR65036.1  16 VLAGLVGLYILLFG 29 
                 55555555555544 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1e-06
        CD20   6 QillGllslvlGilllsvsss.tllasgypfWgGivfiisGvlgiaaekrstkllvklslllnlvslvlala 76 
                  + + l+s+++Gi+ll+++s  t l +++ + +G+vf+++G+l  a  + +   + ++s+   +vsl++ l+
  KIR65036.1  55 NLAFSLVSVAFGIVLLIGASRrTNLGHYMNLTAGAVFLVTGTLMMAVLQTPAN-FLNFSMSTVIVSLLFGLV 125
                 578899**************99**************************99997.778888888888776543 PP

>> DUF4199  Protein of unknown function (DUF4199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   6.5   0.00026      0.77       6      93 ..      21     112 ..      17     117 .. 0.77
   2 ?    2.3   2.5     0.068     2e+02       7      43 ..      89     124 ..      85     133 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00026
     DUF4199   6 lglvwilifll.ilyllglh.qilstg.pllglla..llllllvpflvylalkkyrkknlgGfisfgqafgfgflislvagllsavfqyiyfn 93 
                 +gl+++l+ +  ++  +g++ ++  ++ ++lgl +   ++l++v f+++l++ + r++nlg++++   +  f +  +l  ++l + ++++ f+
  KIR65036.1  21 VGLYILLFGVWgTAETWGEGlFD-RGShWALGLRTnlAFSLVSVAFGIVLLIGASRRTNLGHYMNLTAGAVFLVTGTLMMAVLQTPANFLNFS 112
                 56666666666666777776444.33359999999655666666999999999******999****999999999999999999999998885 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.068
     DUF4199   7 glvwilifllilyllglh.qilstg...pllgllallllll 43 
                 +++++  +l ++++l++  ++l+++   ++++ll+     l
  KIR65036.1  89 AVFLVTGTL-MMAVLQTPaNFLNFSmstVIVSLLF----GL 124
                 455555555.7777777755433331222222222....11 PP

>> DUF2700  Protein of unknown function (DUF2700)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.5   4.4e+03      43      50 ..      25      32 ..      14      36 .. 0.70
   2 ?    4.0   0.1     0.016        47      32      53 ..      57      78 ..      49      81 .. 0.84
   3 ?    7.4   6.3    0.0014       4.2       9      74 ..      58     127 ..      56     130 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.5
     DUF2700 43 llLfGalk 50
                +lLfG++ 
  KIR65036.1 25 ILLFGVWG 32
                67888775 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.016
     DUF2700 32 lasiislllnlllLfGalknne 53
                 +s++s+++ ++lL+Ga ++++
  KIR65036.1 57 AFSLVSVAFGIVLLIGASRRTN 78
                57889************98875 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0014
     DUF2700   9 lailgiirsivllliss....dtlttalasiislllnlllLfGalknnekalkwaqrvllialilavlll 74 
                 +++++++  ivll+ +s      +  +l+  +++l++  l++++l++   +l+++++ ++++l++ ++ll
  KIR65036.1  58 FSLVSVAFGIVLLIGASrrtnLGHYMNLTAGAVFLVTGTLMMAVLQTPANFLNFSMSTVIVSLLFGLVLL 127
                 5666666443333333300002333444455599*******************************99876 PP

>> DUF2892  Protein of unknown function (DUF2892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   8.7      0.21   6.4e+02      10      44 ..      15      70 ..      12      71 .. 0.70
   2 ?    7.6   3.5    0.0013       3.8      11      49 ..      60      97 ..      59     107 .. 0.86
   3 ?    3.8   7.1      0.02        59      16      48 ..      87     131 ..      86     134 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.21
     DUF2892 10 RilrivvGlvllllallglsggw.....................gwllglvGavll 44
                R+l  +vGl++ll++++g++  w                      ++++++G+vll
  KIR65036.1 15 RVLAGLVGLYILLFGVWGTAETWgeglfdrgshwalglrtnlafSLVSVAFGIVLL 70
                66667788888888888888888888888888666666666666666666666665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0013
     DUF2892 11 ilrivvGlvllllallglsggwgwllglvGavllltglt 49
                ++++++G+vll++a  ++  g  ++ + +Gav+l+tg +
  KIR65036.1 60 LVSVAFGIVLLIGASRRTNLG-HYMNLTAGAVFLVTGTL 97
                578999999999999999766.99999**********76 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.02
     DUF2892  16 vGlvllllallglsggw............gwllglvGavllltgl 48 
                 +G+v+l+++ l ++                ++++l+G+vll+tgl
  KIR65036.1  87 AGAVFLVTGTLMMAVLQtpanflnfsmstVIVSLLFGLVLLATGL 131
                 56666666655553222566777788888999************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1095.30
//
Query:       KIR65037.1  [L=324]
Description: stearoyl-CoA 9-desaturase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-17   63.0  26.0    3.8e-17   63.0  26.0    2.2  2  FA_desaturase  Fatty acid desaturase
  ------ inclusion threshold ------
       0.24   11.5   2.8        0.6   10.2   0.7    2.2  2  TMEM169        TMEM169 protein family


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1  10.9     0.066   5.9e+02     133     170 ..      30      68 ..      13      73 .. 0.74
   2 !   63.0  26.0   4.3e-21   3.8e-17       9     226 ..      61     270 ..      57     278 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.066
  FA_desaturase 133 rkwrllawlllllawlglwlalllllglall.lwlvpll 170
                    +  +++  l+l++a+ ++w+++l++  +a++ +w+v+  
     KIR65037.1  30 WAFVVVPFLALVAAVPVAWGGWLGWTDVAVAaFWYVVSG 68 
                    445566667777777999999999999999999999865 PP

  == domain 2  score: 63.0 bits;  conditional E-value: 4.3e-21
  FA_desaturase   9 alllglfllgitgslaHeaaHgalfkkrklnrwlndllgallglplgisysawrisHlrHHaytngpdeDpdlaplalsrfeglfryllrlllgll 104
                    a+++ ++ lgit+++++  +Hg+++     ++wl  +l+ +  l+++  +  w ++H+rHHa  ++ d+Dp+++    +rf+   r l++ l++  
     KIR65037.1  61 AFWYVVSGLGITVGYHRYFTHGSFR----ARPWLRVALAVAGSLAVQGEIIQWVADHRRHHAF-SDLDGDPHSP----WRFGQSVRGLVKGLFHAH 147
                    3444444346667************....9****9999999*********************9.9999****99....777777776555554444 PP

  FA_desaturase 105 vlgwllalvlgl...wlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllfllalvl.nyveHyggdwgerqve 196
                    v gwl+++ l     ++ +l + ra +++ r + +l+ + +l +a++g++l +++ ++l +l+w+  +++ l  +++++ n v H +   g+r+++
     KIR65037.1 148 V-GWLFGRELSNrerFAPDLLADRATRTVDRLFPVLVVVTVLGPALMGGLLTWSWRGALTALFWGGLVRISLLHHVTWSiNSVCHVY---GDRPFA 239
                    4.355555555544577777777777777777788888888888889999999999999999***********************99...899999 PP

  FA_desaturase 197 tsasir.saswllnlltgnlnyHieHHlfPg 226
                     ++  r ++ w+l++l+++ ++H+ HH+ P+
     KIR65037.1 240 MRQGDRaTNFWPLAILSFGESWHNLHHAEPT 270
                    999999999*******************997 PP

>> TMEM169  TMEM169 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.7   6.7e-05       0.6       9      44 ..      22      57 ..      16      65 .. 0.90
   2 ?    0.5   0.1     0.068   6.1e+02      67      90 ..     178     201 ..     175     208 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.7e-05
     TMEM169  9 ekGlhilllsllclPlvfvvsavvsfylGtltWyni 44
                ++G+ + l++++++P+ ++v+av   + G l W ++
  KIR65037.1 22 SRGILVALWAFVVVPFLALVAAVPVAWGGWLGWTDV 57
                6899*****************************887 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.068
     TMEM169  67 lyPllivlvtlslglyaavkqlsl 90 
                 l+P+l+v+++l+ +l +++   s+
  KIR65037.1 178 LFPVLVVVTVLGPALMGGLLTWSW 201
                 589999999999888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2295.17
//
Query:       KIR65038.1  [L=326]
Description: ribose-phosphate pyrophosphokinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-42  141.9   0.0    2.9e-41  140.1   0.0    1.9  2  Pribosyltran_N  N-terminal domain of ribose phosphate pyropho
    5.4e-28   98.3   0.4    3.4e-27   95.7   0.1    2.3  3  Pribosyl_synth  Phosphoribosyl synthetase-associated domain
    2.6e-19   69.3   0.4    1.6e-18   66.8   0.2    2.1  2  Pribosyltran    Phosphoribosyl transferase domain
    1.1e-05   24.9   0.0    1.8e-05   24.3   0.0    1.3  1  UPRTase         Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> Pribosyltran_N  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.1   0.0   6.4e-45   2.9e-41       1     116 []      12     128 ..      12     128 .. 0.99
   2 ?   -1.9   0.0      0.69   3.1e+03      54      87 ..     143     177 ..     136     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 140.1 bits;  conditional E-value: 6.4e-45
  Pribosyltran_N   1 lkifagssskeLaekiakrlgvelgkakvsrfadgEikveieesvrgkdvfiiqslskpvndnlmelllmidalrrasakritaViPylgysrqd 95 
                     l++f+g+  ++La++i + lgv  + a+  +fa+gEi v++++svrg+d f++qs+++ vn+ +me l+m+dal+r+sakrit+V+P+++ysrqd
      KIR65038.1  12 LMLFSGRGFPDLAREIGEVLGVAPTPADAYEFANGEIFVRFKDSVRGSDAFVVQSVTHGVNTWVMETLIMVDALKRGSAKRITVVLPFYPYSRQD 106
                     589******************************************************************************************** PP

  Pribosyltran_N  96 rk.ksrepisaklvaklLeaaG 116
                     +k + repisa+lva+lL++aG
      KIR65038.1 107 KKhRGREPISARLVADLLKTAG 128
                     **889***************99 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.69
  Pribosyltran_N  54 qslskpvndnlmelllmidalrrasa.kritaViP 87 
                     q + + + d+l+ + ++++ ++r+ a +  t+V P
      KIR65038.1 143 QGFFDGPVDHLFAMDVLAEYVERKFAgRPMTVVAP 177
                     55556667888888889999999999667888888 PP

>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.43   1.9e+03     102     120 ..     120     138 ..     114     143 .. 0.84
   2 ?   -1.7   0.0      0.56   2.5e+03       6      34 ..     173     202 ..     169     216 .. 0.76
   3 !   95.7   0.1   7.6e-31   3.4e-27      76     183 ..     216     322 ..     203     323 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.43
                     HHHHHHHTT--EEEEEEEE CS
  Pribosyl_synth 102 aaevlkerGaykiyvlath 120
                      a++lk  Ga +i  +  h
      KIR65038.1 120 VADLLKTAGANRILTVDLH 138
                     58999*****999988777 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.56
                     EEEESSGGGHHHHHHHHHHTT.-EEEEE-- CS
  Pribosyl_synth   6 vivakspgsakkatsyaerlr.lglavihG 34 
                      +va + g ++ a+ +++rl    la ih 
      KIR65038.1 173 TVVAPDSGRVRVAERWTDRLGgCPLAFIHK 202
                     578888888888999999985245777775 PP

  == domain 3  score: 95.7 bits;  conditional E-value: 7.6e-31
                     -EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEEEEE---TTHHHHHHHSS--EEEEESSS--HHHHHT-TTEEEE--HHHHHHHH CS
  Pribosyl_synth  76 tvvGdvgGriaiivddliddvesfvaaaevlkerGaykiyvlathGllssdaprlleesaidevvvtntipheiqklrcskiktvdislllaeai 170
                      vvG+v+Gr+ +ivdd+id   ++ +aa++l+e Ga  i+v +th lls+ a+++l++s+i+evvvtnt+p    + + +ki  + i+ lla ai
      KIR65038.1 216 RVVGEVEGRVCLIVDDMIDTGGTITKAADILRESGAAEIVVASTHALLSDPATERLKNSPITEVVVTNTLPLPP-EKQLDKITVLSIAPLLARAI 309
                     69*********************************************************************998.5589**************** PP

                     HHHHHT---TT-S CS
  Pribosyl_synth 171 rrihngesmsylf 183
                     r ++++ s++ lf
      KIR65038.1 310 REVFDDGSVTTLF 322
                     **********999 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.13   5.6e+02     104     133 ..      80     108 ..      77     131 .. 0.77
   2 !   66.8   0.2   3.5e-22   1.6e-18      17     139 ..     157     278 ..     151     286 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.13
                   HHHHHHHHCC-BSEEEEEEEEE-HHHHHHH CS
  Pribosyltran 104 laalelLkekgpeevriavlvdkpateeev 133
                   + ++++Lk+  ++++ ++ ++++ +++ ++
    KIR65038.1  80 I-MVDALKRGSAKRITVVLPFYPYSRQDKK 108
                   5.7899999999999999999555544443 PP

  == domain 2  score: 66.8 bits;  conditional E-value: 3.5e-22
                   ETTEEEEEE.--GGGEEEEEEETTTHHHHHHHHHHS.TT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHH CS
  Pribosyltran  17 rlaaeilee.yngkpdvvvgiargGvpfakiladeL.evplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLk 111
                   + +ae++e  + g+p +vv++++g v +a +  d+L ++pla++ k++   ++++++a+         ++++g+ +liVDD++dtGgT+++a+++L+
    KIR65038.1 157 DVLAEYVERkFAGRPMTVVAPDSGRVRVAERWTDRLgGCPLAFIHKTRDPLKPNQVVANR------VVGEVEGRVCLIVDDMIDTGGTITKAADILR 247
                   5567777777899********************************************985......6789*************************** PP

                   CC-BSEEEEEEEE...E-HHHHHHHHHH-TT CS
  Pribosyltran 112 ekgpeevriavlv...dkpateeevdknakr 139
                   e g++e+ +a  +     pate+ +    ++
    KIR65038.1 248 ESGAAEIVVASTHallSDPATERLKNSPITE 278
                   *****88877776555777777766655555 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   4.1e-09   1.8e-05     100     170 ..     203     272 ..     185     285 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 4.1e-09
     UPRTase 100 qreeetlep.veyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrla 170
                  r++  l+p + + n++  +++ r  l++D +i TGg++ +a ++L+e g+ e  +     l s  + +rl 
  KIR65038.1 203 TRDP--LKPnQVVANRVVGEVEGRVCLIVDDMIDTGGTITKAADILRESGAAEIVVASTHALLSDPATERLK 272
                 4555..3341567889999999**************************887655444455566777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.55
# Mc/sec: 1771.53
//
Query:       KIR65039.1  [L=230]
Description: 50S ribosomal protein L25 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-25   87.4   0.0    2.3e-24   85.7   0.0    1.8  2  Ribosomal_L25p   Ribosomal L25p family
    3.4e-19   69.0   2.2    9.3e-19   67.6   2.2    1.8  2  Ribosomal_TL5_C  Ribosomal protein TL5, C-terminal domain
  ------ inclusion threshold ------
      0.026   14.7   2.4      0.035   14.3   2.4    1.1  1  PARM             PARM


Domain annotation for each model (and alignments):
>> Ribosomal_L25p  Ribosomal L25p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.0   3.9e-28   2.3e-24       1      81 []       6      93 ..       6      93 .. 0.95
   2 ?   -1.0   0.0      0.44   2.6e+03      22      43 ..     106     127 ..     100     159 .. 0.63

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 3.9e-28
                    EEEEECTS.SCCCHHHHHHTTEEEEEEEESSSCEEEEEEEHHHHHHHCH....CSEEEEEET.T..CEEEEEEEEEETTTTCEEEEEE CS
  Ribosomal_L25p  1 LkaekRte.gkgaarrlRregkvPavlyGggkepisisvdakelrkllkt...stlieLevd.g..ekvllkdvqrhpvkdkilHvDF 81
                    ++ae+Rte gkg arr Rr+g+vPavlyG+ ++p +i+++a+e+  ++++   ++l+ +ev  g    +l k++qr+p+kd+++HvD+
      KIR65039.1  6 ISAEPRTEfGKGGARRTRRAGMVPAVLYGHAEKPKHIALPAREFAAAIRKggaNQLFAIEVSdGtqVLALPKAIQRDPIKDTFEHVDL 93
                    689****99***************************************98***********636756999*****************7 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.44
                     EEEEEEESSSCEEEEEEEHHHH CS
  Ribosomal_L25p  22 vPavlyGggkepisisvdakel 43 
                     vP+ l G+  + + i  d++ l
      KIR65039.1 106 VPVQLTGEAAKDTLIVHDHDTL 127
                     7777777766644444444433 PP

>> Ribosomal_TL5_C  Ribosomal protein TL5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.6   9.7e+03      21      45 ..      55      79 ..      48      82 .. 0.51
   2 !   67.6   2.2   1.6e-22   9.3e-19       1      84 [.     101     179 ..     101     181 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.6
                     TTSEEEESSSEEEEESSTTS--SSE CS
  Ribosomal_TL5_C 21 kggvleqvlreveveclpkdlPeei 45
                     kgg  +    ev+   ++ +lP++i
       KIR65039.1 55 KGGANQLFAIEVSDGTQVLALPKAI 79
                     5555554444444444444555555 PP

  == domain 2  score: 67.6 bits;  conditional E-value: 1.6e-22
                      -SEEEEEEEEES..--TTTTTTSEEEESSSEEEEESSTTS--SSEEEE-TT--SSBEEETTTS--SSS-EESS-TTSEEEEEE- CS
  Ribosomal_TL5_C   1 kvtveVpvhfvgeeespgvkkggvleqvlreveveclpkdlPeeievDvsgleigdsihvsdlklpegvelltdpdevvvsvva 84 
                      kvtveVpv+++g  e+++     ++ + +++++v+++++++P+++e +++gle+g++++++d++lp+gvel +dp+ +v++v+a
       KIR65039.1 101 KVTVEVPVQLTG--EAAK---DTLIVHDHDTLSVTADATKVPDHLEASIEGLEAGTQVTAADVELPSGVELAADPELPVAAVTA 179
                      79**********..5443...56999********************************************************97 PP

>> PARM  PARM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   2.4   5.8e-06     0.035      37     145 ..     112     220 ..      91     229 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.8e-06
        PARM  37 avtasptsgtssnsvlpvtasaetstlpknvsvepreeeatspaskwegtetdpssvklsstssgveltptpeehssgtpeasvpatgsqspaesptlt 135
                   +a  t   + + +l+vta+a + +   + s+e  e+ +  +a + e ++  +  ++       v+ +pt+e+ +++ pe+++pa++++++a  +++ 
  KIR65039.1 112 GEAAKDTLIVHDHDTLSVTADATKVPDHLEASIEGLEAGTQVTAADVELPSGVELAADPELPVAAVTAAPTAEQLEATLPEVEAPAEEAEAEAGEEAAE 210
                 55666777789999************************9999999999766666655555566678999****************************** PP

        PARM 136 Spqapassps 145
                  ++apa+  +
  KIR65039.1 211 GAEAPAAEGE 220
                 *****97644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.52
# Mc/sec: 1327.60
//
Query:       KIR65040.1  [L=196]
Description: peptidyl-tRNA hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-55  186.1   0.0    5.5e-55  185.9   0.0    1.0  1  Pept_tRNA_hydro  Peptidyl-tRNA hydrolase


Domain annotation for each model (and alignments):
>> Pept_tRNA_hydro  Peptidyl-tRNA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.9   0.0   3.1e-59   5.5e-55       1     169 [.       9     191 ..       9     193 .. 0.91

  Alignments for each domain:
  == domain 1  score: 185.9 bits;  conditional E-value: 3.1e-59
                      EEEE---SSTCCTTCGGGHHHHHHHHHHHH............TCEEEE..EETTEEEEEEEESS-GGGHHHHHHHHHHHCT--..GEEEEEEET CS
  Pept_tRNA_hydro   1 livGLGNpgkeYektRHNvGflvvdelakk............aevaeg..kiegekvlllkPqtymNlsGeavkellkfykieseeilvvhDdl 80 
                      l+vGLGNpg+eY+++RHNvGf+v++ la +            aevaeg   ++g k++l+kP+tymNlsG  v+ l++f+k+++ +++ vhD+l
       KIR65040.1   9 LVVGLGNPGREYAGNRHNVGFMVAELLAARvggkfgrhrravAEVAEGrlGLGGPKLVLMKPLTYMNLSGGPVAGLAQFHKVPPGRVIAVHDEL 102
                      89*************************99988777777666644444477899*****************************999********* PP

                      TSSTTEEEEEESS--TT-HHHHHHHHHHT-S-SEEEEEEE---ST-CGGHHHHCTSB-HHHHHC.HHHHHHHHHHCHHHHHHHTSCCHCC CS
  Pept_tRNA_hydro  81 dlplgkirlkkkgssgghnGlksiikklgtekfvRlriGIgrpekakkkvadyVLskfskeeek.leevlekaaealeellkeeleaamn 169
                      d+ +g++r+k +g++gghnGl+s+ k+lgt+++vR+r+GIgrp+  +++ adyVLs+fs++e+k le ++++aa+++e+++++++e ++n
       KIR65040.1 103 DIGYGQVRVKCGGGEGGHNGLRSMSKSLGTKEYVRVRFGIGRPPG-RQDPADYVLSDFSAAERKeLEFLVDRAADVVESVVTRGVEPTQN 191
                      *******************************************98.767**********999666****************987777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1357.70
//
Query:       KIR65041.1  [L=272]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-27   94.4   0.2    2.6e-26   92.7   0.2    1.7  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.2   1.5e-30   2.6e-26      42     270 ..      33     270 ..       5     271 .. 0.77

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 1.5e-30
                 HHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCC..........CT.SSSSSEEEEEEEEETHHHHHHT-.SG-EEEEEEEE.....TTEEEEEEEE CS
  Inositol_P  42 lvtaadeaveelilealaekfpshkilgeetlakge..........kseltedgltwivDPiDGTknFvrgi.pqvaVsigllv.....egkpvlGvia 124
                 l +a d+++++li+++la+ +p++++l+ee+ ++             s+lt+d ++wivDP+DGT++F ++    +aV+++l        ++ v+G+++
  KIR65041.1  33 LRSAGDKVSHDLIRTELAKWRPGDAVLSEEDEGSRLawaaevsagaVSRLTAD-RVWIVDPLDGTREFSEEGrSDWAVHVALWArnastPHRLVAGAVG 130
                 566789************************7777667********99999999.**************9755499*******99766667999****** PP

                 ETTTTEEECEETTTEEEETCEEEEECTTSEGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCHEEEBESSHHHHHHHHHHTSTSEEEEEC.EBHHHHH CS
  Inositol_P 125 qPllgqlysaakgkGaflngeklplsrappiseallvtlfavssrkdtseasllekvesavsaegvrsvgssalklaavaeGkadaylefgrekkWDhA 223
                  P++ +++ +++   a+    ++ l+ a+ + +   + l a s+ + +    +l  +   v a+ ++ +gs+++k+aav++G++day+++g  ++WD A
  KIR65041.1 131 LPAQHRVL-GTDHPPAY---PPMTLEAAT-SGGGRTIRL-AASRSRPPV---FLTDLADDVGAH-LVPMGSAGAKIAAVVTGEVDAYVHAGGQYEWDSA 219
                 **777766.44444442...334555555.444444332.333333333...466777777777.7789*********************99******* PP

                 HHHHHHHHTTEEEEESSSCSSSTTSSEEEEES....CHHHHHHHHHHHCCH CS
  Inositol_P 224 AGeaileeaGGvvtdakgegrlllargiiaan....qkelaellaaavees 270
                 A++a+ ++ G     ++g+ + +++ ++  ++     k la++l+aa++++
  KIR65041.1 220 APVAVATATGLHASRIDGSALKYNEADPRLPDllvcRKDLASRLLAALQRH 270
                 *******************66665555555555555599999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1898.04
//
Query:       KIR65042.1  [L=303]
Description: sulfate adenylyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-48  165.2   0.0    1.7e-48  164.9   0.0    1.1  1  PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
  ------ inclusion threshold ------
      0.055   13.2   0.0      0.082   12.7   0.0    1.3  1  ATP_bind_3   PP-loop family
       0.11   11.9   0.0       0.17   11.4   0.0    1.3  1  QueC         Queuosine biosynthesis protein QueC


Domain annotation for each model (and alignments):
>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.9   0.0   2.9e-52   1.7e-48       2     174 .]      33     257 ..      32     257 .. 0.97

  Alignments for each domain:
  == domain 1  score: 164.9 bits;  conditional E-value: 2.9e-52
                  EEEE--SSCTCHHHHHHHHHHCTTH....EEEEEE-STB-HHHHHHHHHHHHHTT-EEEEEE-SCHHHHHHHHHH-S-THHHCHHHHHHTHHHHHHHH CS
  PAPS_reduct   2 lvvsvsgGkdslVllhLalkafkpv....pvvfvdtghefpetiefvdeleeryglrlkvyepeeevaekinaekhgsslyeeaaeriaKveplkkaL 95 
                  +v+++sgGkds+V+l La kaf p+    pv++vdtgh+fpe++e++d+ ++++gl+l+v++ +e  a+++++e+       + +++ +++  l  a 
   KIR65042.1  33 PVLLFSGGKDSIVMLRLAQKAFAPAsvpfPVMHVDTGHNFPEVLEYRDRRVSELGLQLIVASVPEALARGLVRESG------DGMRNRIQTPVLLDAV 124
                  89**********************66777*********************************************94......3455689********* PP

                  HCTTECEEE----CCCTTTTTTSSSEEECTTT-S......................CEEE-CCCT--HHHHHHHHHHCT--B-CCCCTT......... CS
  PAPS_reduct  96 ekldedalltGaRrdesksraklpiveidedfek......................slrvfPllnWteedvwqyilrenipynpLydqg......... 162
                  ek+++dal++GaRrde+k+rak+++++++++f +                      s+rvfPl+nWte dvw+yi re ip+ ++y+++         
   KIR65042.1 125 EKHRFDALFGGARRDEEKARAKERVFSFRDEFGQwdpknqrpelwslyngrhhpgeSIRVFPLSNWTELDVWHYIARERIPLPSIYFAHerevvqrdg 222
                  ************************************************************************************************** PP

                  .......................-SS--BCTTB-S CS
  PAPS_reduct 163 .......................frsiGcvpctga 174
                                         +r++G+ +ct+a
   KIR65042.1 223 mlyavnefftprageerfvevvrYRTVGDASCTAA 257
                  ********************************975 PP

>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.4e-05     0.082       5      39 ..      36      70 ..      32     114 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
                E--SCHHHHHHHHHHHHHCTTTTTEEEEEEEE-SS CS
  ATP_bind_3  5 AvSgGlDSmaLllllaklkkklgiklvaihvdhgl 39
                 +SgG DS+++l l++k     ++ + ++hvd g 
  KIR65042.1 36 LFSGGKDSIVMLRLAQKAFAPASVPFPVMHVDTGH 70
                59******************999999999999554 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.8e-05      0.17       3      53 ..      34      88 ..      32     114 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.8e-05
                EEE--SSHHHHHHHHHHHHH-SEEE....EEEEESS-TTSHHHHHHHHHHHHT-- CS
        QueC  3 vvllSGGlDSttvlalakkegkeve....altfdYgqrhkkeleaakkiakelgv 53
                v+l+SGG DS ++l la+k+++       ++++d g++  + le++++ ++elg+
  KIR65042.1 34 VLLFSGGKDSIVMLRLAQKAFAPASvpfpVMHVDTGHNFPEVLEYRDRRVSELGL 88
                89*****************996432112257777777766667777666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2449.49
//
Query:       KIR65043.1  [L=439]
Description: galactokinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-22   77.1   1.0    2.1e-21   75.2   0.1    2.4  2  GalKase_gal_bdg  Galactokinase galactose-binding signature
    1.6e-17   63.7   0.1    3.9e-17   62.4   0.1    1.7  1  GHMP_kinases_C   GHMP kinases C terminal
      4e-16   59.0   4.2    5.2e-16   58.6   1.6    2.5  2  GHMP_kinases_N   GHMP kinases N terminal domain


Domain annotation for each model (and alignments):
>> GalKase_gal_bdg  Galactokinase galactose-binding signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.1   3.6e-25   2.1e-21       3      49 .]      67     114 ..      65     114 .. 0.95
   2 ?   -0.7   0.1      0.17     1e+03      14      20 ..     138     144 ..     133     145 .. 0.85

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 3.6e-25
                      HHHHHS--.-EEEEEEEEEEEE--S-TTTT-EEEEEEEEEEEEEEEEE CS
  GalKase_gal_bdg   3 FqktFgke.pfvasAPGRvnLiGEHtDYngGfVlpmAieqdiyiavsp 49 
                      F++++g+  ++ + APGRvnLiGEHtDYn+GfVlp+A+++++++a++p
       KIR65043.1  67 FRQRYGAPaAGRWAAPGRVNLIGEHTDYNDGFVLPFALPLRTVVAAAP 114
                      9******966***********************************986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.17
                      EEEEEEE CS
  GalKase_gal_bdg  14 asAPGRv 20 
                      + APGRv
       KIR65043.1 138 VAAPGRV 144
                      57****9 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.1   6.6e-21   3.9e-17       2      83 ..     338     417 ..     337     419 .. 0.93

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 6.6e-21
  GHMP_kinases_C   2 lealergdlellgellnlsqrs.elkavvgilppeleellealselGalgaklsGaGgGptvfalfkdkdeaeqvaralreef 83 
                     +++l++g+++ +g ll+ s++s    + ++i  pe+++++ea++++Ga+ga+++G G+G++v al+ d d+a++va+a++  +
      KIR65043.1 338 VALLRAGRVRDIGPLLTASHASmR--DDFEITVPEVDTAVEAALAAGAYGARMTGGGFGGCVLALV-DADRADAVADAVTTRY 417
                     678999***************954..59**************************************.************8776 PP

>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.44   2.6e+03      18      32 ..     148     162 ..     148     166 .. 0.82
   2 !   58.6   1.6   8.7e-20   5.2e-16       2      63 ..     170     234 ..     169     236 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.44
                     HHHHHHHHHHHHHHT CS
  GHMP_kinases_N  18 AAlavalvaAllall 32 
                     AA+++++v Al ++ 
      KIR65043.1 148 AAYVAGVVWALREAG 162
                     899999999997765 PP

  == domain 2  score: 58.6 bits;  conditional E-value: 8.7e-20
                     EEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHH.HH..HHHHHHHHHHHHHHHHHSHHHHHHH CS
  GHMP_kinases_N   2 ivikseiPvgaGLGSSAAlavalvaAllallglsl.ee..aklaleaerlaqggngsggDvaasv 63 
                     + + s++P+g+GL+SSAAl +a++aAl +l gl+l  e  ++la++ae++ +g+ ++++D++a++
      KIR65043.1 170 LAVASDVPLGSGLSSSAALEAAVLAALVDLGGLDLpAEgrPRLAQRAENAYVGAPTGIMDQSAAI 234
                     7899******************************963369**********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3493.55
//
Query:       KIR65044.1  [L=327]
Description: UDP-glucose 4-epimerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-48  165.0   0.0    2.3e-48  164.8   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.8e-41  142.7   0.0    2.7e-41  142.1   0.0    1.2  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    3.1e-11   42.8   0.0    4.4e-10   39.0   0.0    2.0  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    5.3e-10   38.9   0.1    9.9e-10   38.0   0.1    1.4  2  RmlD_sub_bind    RmlD substrate binding domain
    7.9e-08   31.8   0.4      3e-06   26.6   0.4    2.7  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    1.2e-07   31.8   0.2    1.9e-07   31.2   0.2    1.3  1  NAD_binding_10   NAD(P)H-binding
    2.2e-05   24.1   0.6    0.00026   20.6   0.6    2.3  1  NmrA             NmrA-like family
    0.00048   19.4   0.2        0.3   10.2   0.0    2.4  2  NAD_binding_4    Male sterility protein
     0.0076   16.2   0.8      0.066   13.1   0.4    2.2  2  KR               KR domain
  ------ inclusion threshold ------
      0.023   14.2   0.3       0.63    9.5   0.0    2.2  2  adh_short        short chain dehydrogenase
      0.053   13.1   0.3      0.087   12.4   0.3    1.3  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
       0.16   11.6   0.0       0.27   10.9   0.0    1.3  1  ApbA             Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.8   0.0   1.5e-51   2.3e-48       2     241 .]       4     251 ..       3     251 .. 0.91

  Alignments for each domain:
  == domain 1  score: 164.8 bits;  conditional E-value: 1.5e-51
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnlle 100
                 lVtG++G+iGs +++ ll++g+ev++ld l++++++a+ +d+++v++ + +++++     e ++d v+h+Aa    ++s+ +p+ ++++n++g+l l++
  KIR65044.1   4 LVTGGAGYIGSVVTRMLLDAGHEVVVLDDLRTGHREALAPDATWVDAPIHEAARVLT--PEAGFDGVLHFAALIAAGESMVRPELYWQNNTVGSLALID 100
                 9***************************************99999999998776555..555************************************* PP

                 HHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT........S-TTSTTSHHHHHHH CS
   Epimerase 101 aarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGpr........ngegevsrvipalir 191
                 a+r+a v r++f s+++vYG+++e p  et+     +p++ Y+a+Kla++  +++ a  ++l a++lr+fn+ G++        + ++ ++++ip ++ 
  KIR65044.1 101 AVRAARVPRMVFSSTAAVYGNPTELPIPETA---VKAPTNTYGATKLAVDMALTSEAIGHDLAAVSLRYFNVAGAYlrgdvaigERHDPETHLIPIALD 196
                 ************************9877888...559****************************************9999974444449999998888 PP

                 HHHTTSSSEEEET......TST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 192 kilegkqevtllg......dgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                  ++ +++++ l+g      dgt +Rd+++veD+a+a+ll+l++   g++ ++yn+G
  KIR65044.1 197 VAAGRREKLQLFGddyptvDGTCVRDYIHVEDLARAHLLALTAAVPGRH-RVYNLG 251
                 7777669************************************666554.699998 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.1   0.0   1.8e-44   2.7e-41       1     323 [.       4     305 ..       4     314 .. 0.85

  Alignments for each domain:
  == domain 1  score: 142.1 bits;  conditional E-value: 1.8e-44
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG+aG+iGs ++++Ll+ g+ev++++     ++tg+ e+la         + +++ + + ++++   l  e+ +d v+++AA  + ++s+  Pe
     KIR65044.1   4 LVTGGAGYIGSVVTRMLLDAGHEVVVLD----DLRTGHREALAP--------DATWVDAPIHEAAR--VLTPEAGFDGVLHFAALIAAGESMVRPE 85 
                    9***********************9985....456888999974........35799999999775..578899********************** PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS-TTS CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhesprrgetf 192
                     ++++n +G l L++a+ra+ +    r++++St+ vYG+++e p+ Et    P++ Y+a+Kl+ d+  ++    ++l av+ ++fn  + +   ++
     KIR65044.1  86 LYWQNNTVGSLALIDAVRAARV---PRMVFSSTAAVYGNPTELPIPETAVKAPTNTYGATKLAVDMALTSEAIGHDLAAVSLRYFNVAGAYLRGDV 178
                    *******************976...69***********************************************************9999976654 PP

                    .......CCCHHHHHHHHHHTTS-C-EEC.TTTT-EEEEEEHHHHHHHHHHHHHCSS-.--EEE-TT-EEECHHCHHCCHHCCCHHHHHH...... CS
  GDP_Man_Dehyd 193 .......vtrkitravarialgkqevlyl.GnldakRdwghvkDyveamwlmlqqdkp.edyviatgethsvrefvelaflelgktiewegkgeee 279
                           ++ ++++++  +a+g++e+l+l G+ +++ d + v+Dy+++ +l+  +  +    v +  +++++++ +  ++ +++  +         
     KIR65044.1 179 aigerhdPETHLIPIALDVAAGRREKLQLfGDDYPTVDGTCVRDYIHVEDLARAHLLAlTAAVPGRHRVYNLGNGAGFTNRQVVDVV--------- 265
                    4555556888999999***********998*99999888888888888887665533314566677777888777777777776432......... PP

                    ......TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS CS
  GDP_Man_Dehyd 280 vgrakesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkv 323
                        +e      +v+ +++r+g+  +l++  + a+eeLgW+p+ 
     KIR65044.1 266 ----REVTGRPLPVEVAPRREGDPAELVASSALAREELGWTPEK 305
                    ....233344689999*************************984 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0     3e-13   4.4e-10       1     230 [.       4     238 ..       4     246 .. 0.73

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 3e-13
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD.lrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvag.kltedeimkvnvkGTr 97 
                 +vtGgaG++G+ + ++L+++++  ev vlD lr++++    +   + +  + + + +++++     g d v+h a+l+     +++ + + + n  G  
  KIR65044.1   4 LVTGGAGYIGSVVTRMLLDAGH--EVVVLDdLRTGHRE---ALAPDAT-WVDAPIHEAARVLTPEAGFDGVLHFAALIAAGEsMVRPELYWQNNTVGSL 96 
                 69*******************5..99999845554443...3333333.78999***********************99987699999999******** PP

   3Beta_HSD  98 nvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaE.klvlkaNgrtlkngg.rlyTca...LRpagiyGegdk...l 188
                  +++a + a v+++v+ S+a v g+  ++ +i    E  +  + ++++y  +K   + +l  +a g+ l   + r + +a   LR  +  Ge+++    
  KIR65044.1  97 ALIDAVRAARVPRMVFSSTAAVYGN-PTELPIP---E--TAVKAPTNTYGATKLAVDmALTSEAIGHDLAAVSlRYFNVAgayLRGDVAIGERHDpetH 189
                 ****************999988887.6666666...3..344567788888885444134456677777777777666666668888888887541114 PP

   3Beta_HSD 189 lvpllkqlaklglal.......fkigdeevlsdrvYvgNvawahilAar 230
                 l p +  +a  + ++       + ++d   + d++ v+ +a ah+lA  
  KIR65044.1 190 LIPIALDVAAGRREKlqlfgddYPTVDGTCVRDYIHVEDLARAHLLALT 238
                 4454444443333220111111457888888889999999999998875 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.1   6.6e-13   9.9e-10       1     139 [.       1     153 [.       1     171 [. 0.92
   2 ?   -3.2   0.0       2.4   3.6e+03     188     231 ..     228     269 ..     225     295 .. 0.56

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 6.6e-13
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.............T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre.............eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaeave 83 
                    mk+lvtG+ G +Gs +++ l  +g+ev+ l+                +d    ea++ l  ea  d v + AA  a  +    +e+  + n  ++ 
     KIR65044.1   1 MKLLVTGGAGYIGSVVTRMLLDAGHEVVVLDDLrtghrealapdatWVDAPIHEAARVLTPEAGFDGVLHFAALIAAGESMVRPELYWQNNTVGSL 96 
                    89****************************765689999**99998788888999999999******************999************** PP

                    HHHHHHHHCT-E.EEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHHH CS
  RmlD_sub_bind  84 alAeaaaavgal.LihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavlaa 139
                    al +a +a+ ++ +++ St  V+   ++ p  e++ ++P n+YG+tKla   a  ++
     KIR65044.1  97 ALIDAVRAARVPrMVFSSTAAVYGNPTELPIPETAVKAPTNTYGATKLAVDMALTSE 153
                    ****9999998659**********99***********************99988765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.4
                    HHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHH CS
  RmlD_sub_bind 188 dlAevllqllekaaeekelagvyHlanegetswlefArailkea 231
                    dlA++ l +l++a+      +vy l+n +  +  ++ +++ + +
     KIR65044.1 228 DLARAHLLALTAAVP--GRHRVYNLGNGAGFTNRQVVDVVREVT 269
                    555555555554443..445666666655555554444444433 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.4     2e-09     3e-06       1     174 [.       3     172 ..       3     179 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2e-09
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      +lvtG++G iGs ++r +l+   + ++l +    +  +++ +         + v+     + +++++r+ +   e + d v+h AAl       
       KIR65044.1   3 LLVTGGAGYIGSVVTRMLLDAGHEVVVLDDLRTGHREALAPDA--------TWVD-----APIHEAARVLTP--EAGFDGVLHFAALIAAGESM 81 
                      59**********9999999887766655444443333333332........2223.....567777777665..55***********9999999 PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE.............GGGSS.--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETTG CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieagvkkvvliSt.............DKAvn.PtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlgS 174
                        p   +++N +g+  +i+a  +a+v ++v+ St               Av+ Ptn++GatK++ ++ l++ a  +   + + v  R+ NV g+
       KIR65044.1  82 VRPELYWQNNTVGSLALIDAVRAARVPRMVFSSTaavygnptelpipETAVKaPTNTYGATKLAVDMALTSEAIGH---DLAAVSLRYFNVAGA 172
                      9999*****************************944444444444443566459************9998877666...788999999999885 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.2   1.3e-10   1.9e-07       1     130 [.       7     149 ..       7     187 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.3e-10
                     TTTSHHHHHHHHHHHHC-T-EEEEE..ETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEE..EES-.--TCC..........HHHH..H CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtal..vRnpeklaeleaeeglevvegdvtdvedlaealkgadaV..vsal.ggggk..........deeg..a 78 
                     G+ G +G+ +++ ll++g hev++l   R+ ++ a l  ++ ++ v++ +++++ +    +g d V  ++al ++g++          +  +   
      KIR65044.1   7 GGAGYIGSVVTRMLLDAG-HEVVVLddLRTGHREA-L--APDATWVDAPIHEAARVLTPEAGFDGVlhFAALiAAGESmvrpelywqnN--TvgS 95 
                     999**************5.***9885556655554.6..49***********************9854444464444467666666433..2569 PP

                     HHHHHHHHHCT--EEEEEEETTTTSGCGCHHH..HHHHHCCHHHH.HHHHHHHHH CS
  NAD_binding_10  79 knivdaakeagvkRfvlvsaigvgdevpgefg..ewnkellkayl.aakraaeel 130
                      +++da+++a v R+v+ s++ v+ + p+e++  e++ ++  +++ a k a +  
      KIR65044.1  96 LALIDAVRAARVPRMVFSSTAAVYGN-PTELPipETAVKAPTNTYgATKLAVDMA 149
                     99*********************963.4443300333334434441445555554 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.6   1.8e-07   0.00026       2     103 ..       4     116 ..       3     134 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.8e-07
                 EESSTTSHHHHHHHHHHHHHT-EEEEEES-S..........-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHTT-SEEEE---GGS-HHHHHHHHHHH CS
        NmrA   2 lviGaTGrqGksvvrallkaghkvralvRdt..........kselakslkeaGvelv..kgdlddkeslvealkgvdvvfsvtgfyskeiedgkklvdA 88 
                 lv+G++G++G+ v+r+ll+agh+v +l  d+          +   +++  ++ + ++  ++  d     ++++   + +     ++++++    +l+dA
  KIR65044.1   4 LVTGGAGYIGSVVTRMLLDAGHEVVVL-DDLrtghrealapDATWVDAPIHEAARVLtpEAGFDGVLHFAALIAAGESMVRPELYWQNNTVGSLALIDA 101
                 8***********************887.344233444444433333333333333331333344444455555555555555555699999999***** PP

                 HHHHS-SEEEEEE-- CS
        NmrA  89 akeaGvkhfiySslg 103
                 + +a v+++++Ss +
  KIR65044.1 102 VRAARVPRMVFSSTA 116
                 ************976 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1     0.002         3       1      27 [.       5      29 ..       5      46 .. 0.83
   2 !   10.2   0.0    0.0002       0.3      88     208 ..      65     171 ..      53     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.002
                   EE-TTSHHHHHHHHHHHHHS-.TEEEE CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyl 27
                   +TG+ G++G+v+ + LL+   e  +++
     KIR65044.1  5 VTGGAGYIGSVVTRMLLDAGHE--VVV 29
                   7****************99885..444 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0002
                    --EEEE--SS-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHH CS
  NAD_binding_4  88 vdviihsaAtvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsK 180
                     d ++h aA +   e++ +    ++ N+ G   +++  ++ +    +++ STa+v+g+ ++                    ++  k  +ntY  +K
     KIR65044.1  65 FDGVLHFAALIAAGESMVRpelYWQNNTVGSLALIDAVRAARVP-RMVFSSTAAVYGNPTE----------------LPIPETAVKAPTNTYGATK 143
                    57799999999999977665558999**********99999999.9******999999993................4566778888999****** PP

                    HHHHHHHHHHHHHH---EEEEEE-EEE- CS
  NAD_binding_4 181 alaEklvrearrrsglpvvivRpsiitg 208
                     + ++ + +++  ++l +v +R  ++ g
     KIR65044.1 144 LAVDMALTSEAIGHDLAAVSLRYFNVAG 171
                    *****99999989999988888777766 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.4   4.4e-05     0.066       4      30 ..       4      30 ..       2      56 .. 0.89
   2 ?    1.3   0.0      0.19   2.9e+02     116     145 ..      95     123 ..      39     126 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.4e-05
                EEETTTSHHHHHHHHHHHHHHS-EEEE CS
          KR  4 litGGlGgLGlelarwlaekgarhlvl 30
                l+tGG+G +G +++r+l++ g + +vl
  KIR65044.1  4 LVTGGAGYIGSVVTRMLLDAGHEVVVL 30
                9********************999987 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.19
                 HHHHHHHTTTS--SEEEEEEEHHHHH--TT CS
          KR 116 awnLhelledesldffvlfSSiagllgsag 145
                 +  L  +++  ++  + +fSS a+++g+++
  KIR65044.1  95 SLALIDAVRAARVPRM-VFSSTAAVYGNPT 123
                 5555555555555544.5899999999986 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00042      0.63       4      33 ..       4      33 ..       2      44 .. 0.87
   2 ?    2.4   0.0     0.063        93     147     182 ..     137     174 ..     131     186 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00042
                EEESTTSHHHHHHHHHHHHTT-EEEEEESC CS
   adh_short  4 lvtGassGIGraiakelakeGakvvvvdrs 33
                lvtG+++ IG  + + l+ +G +vvv+d  
  KIR65044.1  4 LVTGGAGYIGSVVTRMLLDAGHEVVVLDDL 33
                9*************************8864 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.063
                 HHHHHHHHHHHHH..HHHHHHHHGGGTEEEEEEEESSB CS
   adh_short 147 aaYsAsKaavagl..trslakelaptgirvnavaPGlv 182
                   Y+A+K av++   ++++ ++la  + r  +va +++
  KIR65044.1 137 NTYGATKLAVDMAltSEAIGHDLAAVSLRYFNVAGAYL 174
                 68********9851145677777777777666666555 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   5.8e-05     0.087       7      30 ..       8      31 ..       1      35 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.8e-05
                    --STTHHHHHHHHHHCTSEEEEE- CS
  UDPG_MGDP_dh_N  7 GlGYvGlvtaavlaeighevigvD 30
                    G+GY+G v   +l  +ghev+++D
      KIR65044.1  8 GAGYIGSVVTRMLLDAGHEVVVLD 31
                    8*********************99 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00018      0.27       5      31 ..       8      34 ..       5      63 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00018
                S-SHHHHHHHHHHHHHTHCEEEE-SCH CS
        ApbA  5 GaGaiGsllaakLakagadvtlilrsr 31
                GaG iGs++  +L  ag++v++++  r
  KIR65044.1  8 GAGYIGSVVTRMLLDAGHEVVVLDDLR 34
                9*******************9997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 2759.22
//
Query:       KIR65045.1  [L=341]
Description: hypothetical protein TK50_05885 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-17   62.6   6.2    6.2e-08   33.0   1.1    4.3  3  CBS        CBS domain
    6.5e-17   61.3   0.0    6.8e-15   54.9   0.0    2.6  2  CorC_HlyC  Transporter associated domain
  ------ inclusion threshold ------
       0.34   11.2   0.2       0.34   11.2   0.2    4.6  4  DUF4129    Domain of unknown function (DUF4129)


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   1.1     1e-11   6.2e-08       1      53 [.      92     147 ..      92     151 .. 0.85
   2 !   27.3   0.1   5.9e-10   3.5e-06       7      56 ..     162     211 ..     148     212 .. 0.78
   3 ?    1.3   0.0      0.08   4.8e+02      25      37 ..     263     274 ..     256     278 .. 0.75

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1e-11
                 HHHH..SBSSCEEEETTSBHHHHHHHHHHHTSSEEEEE..ETTTBEEEEEEHHHHHH CS
         CBS   1 Vgdi..mtrdvvtvppdttleealelmrekgvsrlPVV..dedgklvGivtlrDllr 53 
                 V+++  ++++vv+++  +t++ea +l r + ++r+PVV    d  +vG v+lrD+l 
  KIR65045.1  92 VREVmmPRTEVVFLSVGMTVAEAERLVRAETHRRYPVVdgTQD-DVVGFVHLRDVLL 147
                 678766788******************77779******64334.4**********95 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 5.9e-10
                 SSCEEEETTSBHHHHHHHHHHHTSSEEEE.EETTTBEEEEEEHHHHHHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvsrlPV.VdedgklvGivtlrDllrall 56 
                 r+v  +p +  +  al +mr++g+ +l V Vde+g   Givt +Dl++ l+
  KIR65045.1 162 REVKRLPGSKRVLAALTEMRREGH-HLAVvVDEYGGTAGIVTCEDLIEELV 211
                 455555556667888999999995.886527****************9986 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.08
                 HHHHTSSEEEEE.E CS
         CBS  25 mrekgvsrlPVV.d 37 
                 m  ++++rlPVV d
  KIR65045.1 263 M--AALGRLPVVgD 274
                 5..4489*****33 PP

>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.011        65      38      72 ..      42      80 ..      40      87 .. 0.75
   2 !   54.9   0.0   1.1e-18   6.8e-15       9      80 ..     232     317 ..     231     318 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.011
                HHHHHH-S---TT-.EE.EEEETTEE..EEEEEEETTCE CS
   CorC_HlyC 38 lllellgriPkege.sv.evdleglr..ftVlemdgrrI 72
                l+++llg  P+ g  ++ e +l +l    tVl++d+rrI
  KIR65045.1 42 LVTDLLGASPAAGReRIsEAELRDLVaaSTVLDADERRI 80
                68899999999887566677777654448*********5 PP

  == domain 2  score: 54.9 bits;  conditional E-value: 1.1e-18
                 EEETT-BHHHHHHHHTSTTHHCT-SBHHHHHHHHH-S---TT-EEEE.............EETT...EEEEEEEEETTCEEEEEEEE- CS
   CorC_HlyC   9 lvdGslpldeleeelglelpeedyeTlgGlllellgriPkegesvev.............dleg...lrftVlemdgrrIkkvrvekl 80 
                 +vdG+l+l +++e++g++l  + yeT gG+++ +lgr+P +g++v v             d      + + Vl+ +grr++++ v+++
  KIR65045.1 232 VVDGRLNLADFAERTGVRLAAGPYETAGGYVMAALGRLPVVGDEVPVappaadggdrdpdD--PpggWLLRVLALEGRRVSRLAVSVV 317
                 79*****************************************665567777666666653..0455****************99876 PP

>> DUF4129  Domain of unknown function (DUF4129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   3.0      0.09   5.4e+02      28      66 ..      16      68 ..       8      70 .. 0.50
   2 ?   -2.1   0.1      0.79   4.7e+03      59      66 ..     112     119 ..      83     129 .. 0.66
   3 ?   11.2   0.2   5.8e-05      0.34      15      44 ..     150     179 ..     142     183 .. 0.89
   4 ?    1.5   1.5      0.06   3.6e+02       9      34 ..     242     271 ..     238     320 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.09
     DUF4129 28 rv.riapspaaalaal........aelfeearY.....Ggrpasaeeyrrlve 66
                rv r+++++a+a+a+l        ++l+++++      G++++s++e+r lv+
  KIR65045.1 16 RVrREPGPLARAVARLvvraadgaTRLVTDLLGaspaaGRERISEAELRDLVA 68
                55555555666666643111111133333333355555666666666666665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.79
     DUF4129  59 eeyrrlve 66 
                 +e++rlv+
  KIR65045.1 112 AEAERLVR 119
                 33444433 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 5.8e-05
     DUF4129  15 drrpgeTprEyarrvriapspaaalaalae 44 
                 d  pg T +E+ar+v + p  ++ laal+e
  KIR65045.1 150 DLDPGTTVGELAREVKRLPGSKRVLAALTE 179
                 567************888999999***998 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.06
     DUF4129   9 Laer.gldrrpg..eTprEyarrv.riaps 34 
                  aer g++ ++g  eT++ y+ ++  + p 
  KIR65045.1 242 FAERtGVRLAAGpyETAGGYVMAAlGRLPV 271
                 56666888886666****999888644444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2429.82
//
Query:       KIR65046.1  [L=341]
Description: tryptophanyl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-81  272.1   0.0    7.2e-81  271.7   0.0    1.0  1  tRNA-synt_1b     tRNA synthetases class I (W and Y)
  ------ inclusion threshold ------
      0.062   13.1   0.0       0.14   12.0   0.0    1.5  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 
       0.15   12.1   0.1       0.29   11.2   0.1    1.4  1  DUF3775          Protein of unknown function (DUF3775)
       0.16   12.0   1.4       0.68   10.0   0.3    2.3  2  baeRF_family2    Bacterial archaeo-eukaryotic release factor 


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.7   0.0   1.6e-84   7.2e-81       5     292 ..       7     289 ..       5     290 .. 0.97

  Alignments for each domain:
  == domain 1  score: 271.7 bits;  conditional E-value: 1.6e-84
                   --EEEEEEETSSS.-BGG.GHHHHHHHHHHHHTTSEEEEEEEHHHHHTTTTT-SSHHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEETHHHHTTHHH CS
  tRNA-synt_1b   5 plrvysGidPTgk.lHlG.ylvplkklvelqkaghevffliaDlhAiigdpskaeerklrkreevlenaikaqlakgldpekaevvlqsewlehlel 99 
                   + rv+sGi+PT++ +HlG yl++++++v+lq ++h++f +++DlhAi+  ++   ++ lr+r++v++++   + a+gldpe++++++qs+++eh +l
    KIR65046.1   7 RPRVFSGIQPTADsFHLGnYLGAVRHWVALQ-DTHDAFYCVVDLHAITAGHD---PKVLRQRTRVAAAQ---LFAVGLDPERSTLFVQSQVPEHPQL 96 
                   579****************************.********************...**************...************************* PP

                   HHHHHHHHTTCBHHHHHHHHHCCHHCSS.SC--BHHHHHHHHHHHHHHHHTCHSEEEEEGGGHHHHHHHHHHHHHHHHH..STTSS-EEEEET.... CS
  tRNA-synt_1b 100 aellrdlgklgslnrmlqfksvkkrlee.gegislgeftYplLqaaDilllkadlvpgGsDQkqnielgrdlarrfnkk..evfkkpegltvp.... 189
                   a++l +++ +g+ +rm+qfk+  k+ ++ +++ s+g+ftYp+LqaaDill++a+ vp+G+DQ+q++el rdla+rfn++  ++f  p + +v+    
    KIR65046.1  97 AWVLGCITGFGEASRMTQFKD--KSQKQgSDRSSVGLFTYPILQAADILLYQAHAVPVGEDQRQHLELSRDLAQRFNSQfgKTFVVPAPHIVKdtak 191
                   *********************..6666656899**********************************************9999999999999999*9 PP

                   -BBSTTSSSBTTCETTC..GC-BTTCCHHHHHHHHHHCHCSTTCSHHHHHHHHHTHHHCHHHHHHHHCCSEEESSHHHHHHHHHCCCCHHHHHHHHH CS
  tRNA-synt_1b 190 lltgldGekKmSKSagn..saIfLddekesvkkkiqkavtdsdeevekllklktelsnelierleavsgkkpkreaeellaeevtklvhggdlkkal 284
                   + ++ d++ KmSKS+++  + I+L+++++   kki++avtd ++e+ +++++k+++sn l+++++a+++++      +l+a+++ +  ++gdlkk+l
    KIR65046.1 192 ITDLQDPTAKMSKSSSSpsGIIDLLEDPARSAKKIRSAVTDTGREIVFDSETKPGVSN-LLTIYSALTDRSI----DDLVAAYAGR--GYGDLKKDL 281
                   ***************99999**************************************.*******999887....**********..********* PP

                   HHHHHHHH CS
  tRNA-synt_1b 285 aealnell 292
                    e+++e+ 
    KIR65046.1 282 GEVVREFV 289
                   ***99985 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     3e-05      0.14      32      60 ..      88     114 ..      78     122 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3e-05
                      HS-----.-SEEEEESTSSHHHHHHHHHH CS
  Eno-Rase_NADH_b  32 sqkkiekgpkkvLviGaStGYGLAsriaa 60 
                      sq  + ++p+ + v+G+ tG+G Asr++ 
       KIR65046.1  88 SQ--VPEHPQLAWVLGCITGFGEASRMTQ 114
                      33..4446999***************985 PP

>> DUF3775  Protein of unknown function (DUF3775)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   6.6e-05      0.29       9      70 ..     255     316 ..     248     318 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.6e-05
     DUF3775   9 esLnedeqaeLvALmwiGRg.dfeaeewdeaveeAreeesertadyLlgkplladyLeeGLea 70 
                 ++L+++ + +LvA ++ GRg    ++++ e+v+e     +ert  yL + ++l ++L++G e+
  KIR65046.1 255 SALTDRSIDDLVA-AYAGRGyGDLKKDLGEVVREFVTPIQERTRAYLDDPAQLDKLLAAGAEK 316
                 5788889999999.899***655679**********************************986 PP

>> baeRF_family2  Bacterial archaeo-eukaryotic release factor family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.21   9.2e+02      95     130 ..      36      71 ..      34      74 .. 0.81
   2 ?   10.0   0.3   0.00015      0.68      88     144 ..     274     330 ..     263     332 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.21
  baeRF_family2  95 Lpervrelvvevegggraagadrealaeevaealae 130
                    L++ + +    v+ ++ +ag+d++ l+++++ a+a+
     KIR65046.1  36 LQDTHDAFYCVVDLHAITAGHDPKVLRQRTRVAAAQ 71 
                    566666777788999999**********99988775 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00015
  baeRF_family2  88 rsllrdeLpervrelvvevegggraagadrealaeevaealaerrarrreevlerfr 144
                     ++l++ L+e vre v+ +++ +ra   d+++l++ +a+ +++ ra + +++ e ++
     KIR65046.1 274 YGDLKKDLGEVVREFVTPIQERTRAYLDDPAQLDKLLAAGAEKARAVASATLHETYE 330
                    679**************************************9999999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2654.83
//
Query:       KIR65047.1  [L=196]
Description: phosphoesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-19   69.1   0.6    4.3e-19   68.9   0.6    1.1  1  2_5_RNA_ligase2  2'-5' RNA ligase superfamily
    4.3e-12   46.1   0.9    1.8e-05   24.8   0.2    2.2  2  LigT_PEase       LigT like Phosphoesterase


Domain annotation for each model (and alignments):
>> 2_5_RNA_ligase2  2'-5' RNA ligase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.6   4.8e-23   4.3e-19      21     149 ..      54     180 ..      36     183 .. 0.90

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 4.8e-23
  2_5_RNA_ligase2  21 yprwppHitLlypfvededl.adlaellsrlaketepfevrldgfgvFehkksvvylsv.sdsealqalraallealpeagdkedsgeftPHlT 112
                         +p+H+tLl+p +++    ++++++l+ +a+ + pf+++l g g+F++ ++vv++ v  + ++++ l aa+ +a + +++ +  ++++PH+T
       KIR65047.1  54 PLVVPAHVTLLGPTEIPTAAlPAVERHLAGVAATHLPFTLHLRGTGTFRPVTQVVFVAVaAGISECELLAAAINSAPELHRETR--FPYHPHVT 145
                      45689************9889****************************999999999999***************77777777..******** PP

  2_5_RNA_ligase2 113 iaqsadstsaaelleklaqalpplefevdevallrrd 149
                      +aq  ++++ +++ e+l  a +++ fevd+++l ++ 
       KIR65047.1 146 VAQDVAPEALDRAYEDL--ADFSAMFEVDSFTLFSHS 180
                      *****************..999999******999876 PP

>> LigT_PEase  LigT like Phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.2     2e-09   1.8e-05      35      79 ..      59     103 ..      45     109 .. 0.93
   2 !   20.0   0.0   6.4e-08   0.00058      18      79 ..     126     179 ..     110     185 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2e-09
                 SEEEEEEEEEESHHHHHHHHHHHHHHHHTSBEEEEEEEEEEEEEE CS
  LigT_PEase  35 pHiTLaflgevdeekvpellealaeiasgaepfelkvdgvglfps 79 
                  H+TL  + e++  ++p+++++la++a+   pf+l+++g+g+f++
  KIR65047.1  59 AHVTLLGPTEIPTAALPAVERHLAGVAATHLPFTLHLRGTGTFRP 103
                 7******************************************85 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 6.4e-08
                 HHHHHCCTTEEETSGGGSEEEEEEEEEESHHHHHHHHHHHHHHHHTSBEEEEEEEEEEEEEE CS
  LigT_PEase  18 leralaklglkpvrpfnpHiTLaflgevdeekvpellealaeiasgaepfelkvdgvglfps 79 
                 +   +++l+     p++pH+T+a    v +e+++++ e la++++      ++vd ++lf+ 
  KIR65047.1 126 IN-SAPELHRETRFPYHPHVTVAQD--VAPEALDRAYEDLADFSAM-----FEVDSFTLFSH 179
                 44.344445555579********99..669*************766.....*********74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 1356.69
//
Query:       KIR65048.1  [L=311]
Description: ribonuclease BN [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-35  122.3  23.4    3.1e-35  122.1  23.4    1.0  1  Virul_fac_BrkB   Virulence factor BrkB
  ------ inclusion threshold ------
        5.7    5.9   8.3       0.65    9.0   3.9    1.6  2  PHO4             Phosphate transporter family


Domain annotation for each model (and alignments):
>> Virul_fac_BrkB  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1  23.4   3.4e-39   3.1e-35       6     253 ..      41     276 ..      37     281 .. 0.89

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 3.4e-39
  Virul_fac_BrkB   6 sllAaalayytllSlfPlllvllavlgl.lglddelqeqlldllaevlpegaaevvedilqrllnqaslgllglavllwsasggvsalrralnki 99 
                      +lAaa+ayy ++++f l lv+++v+g+ l  +de+++ ++ +l+e+lp      + d  q +++++++g++gl++l+++++g+v+a+r++ + +
      KIR65048.1  41 GRLAAAIAYYGFFAVFALALVAYSVFGAiLEDNDEVSDAAAGFLKENLP------FLDPAQIAQSSNTVGVVGLVILVFTGIGWVEAIRSSQRLM 129
                     579***********************99666778888888888888888......5556655566779*************************** PP

  Virul_fac_BrkB 100 ygv.eesrsflrkrllsllllllllvllllslvlsvflqslllasapllglglelsellllqllrwlvallllvlafallYrvlpnvkvrlraal 193
                     yg  +++ +++++rl++l++l+++ vll+ls++++ +l+sll+++   l  +     ++ l +++ ++++l+++++ a+l   +p+ + + r++ 
      KIR65048.1 130 YGLnQQPGNLVVRRLVDLGVLVGVFVLLGLSVAAVDALESLLRFL---LRST-G--SVG-LTVVSAVLSVLVNAVLAAALLVAVPRLRMSRRRLR 217
                     ***655667*******************************77754...3322.1..233.67777779999************************ PP

  Virul_fac_BrkB 194 pGallaallwllvkilfslylsnfasynaiYGslgaliilllWlylsalilLlGaelnae 253
                     p  +++a++++l++ +  +y+++   +n +Y  +++ ++lll+lyl+++++L+Ga+l+a+
      KIR65048.1 218 PVVFAVAVGITLLNTVGRFYVVR-TERNPAYTVVAGAVGLLLYLYLLNQLVLFGAALAAT 276
                     ***********************.679*******************************98 PP

>> PHO4  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.18   1.6e+03      33      47 ..      55      69 ..      37     125 .. 0.45
   2 ?    9.0   3.9   7.3e-05      0.65      97     174 ..     156     240 ..     147     280 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.18
        PHO4 33 flGavllGaeVaeti 47
                +++  l+ ++V  +i
  KIR65048.1 55 VFALALVAYSVFGAI 69
                333333333333333 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 7.3e-05
        PHO4  97 liGaalaaeggeavkw.........kklvkivlswvlsPllggiiaallfllvkrlilvkeklknalralpvlvlvtiailalsilf 174
                 l+G ++aa  ++a++          ++++  v+s vls+l+ +++aa+l+++v rl + +++l+  + a+ v ++++ ++  +++++
  KIR65048.1 156 LLGLSVAA--VDALESllrfllrstGSVGLTVVSAVLSVLVNAVLAAALLVAVPRLRMSRRRLRPVVFAVAVGITLLNTVGRFYVVR 240
                 45666664..233333555677666589999*************************8865555544444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2192.86
//
Query:       KIR65049.1  [L=148]
Description: hypothetical protein TK50_05905 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1022.19
//
Query:       KIR65050.1  [L=106]
Description: ligand-binding protein SH3 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-29  102.7   8.5    1.5e-29  102.5   8.5    1.1  1  Multi_Drug_Res  Small Multidrug Resistance protein
    0.00018   21.7  11.8    0.00021   21.5  11.8    1.2  1  EamA            EamA-like transporter family


Domain annotation for each model (and alignments):
>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   8.5   1.7e-33   1.5e-29       1      93 []       1      93 [.       1      93 [. 0.99

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 1.7e-33
                    XX-HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH CS
  Multi_Drug_Res  1 mnwvllvlAillevvgailLklsegftkltpsllvivgygisfllLskalkslpvsvAYavwsGiGtvlivlvgillfgeslslkkliglali 93
                    m++++lvlAi +ev+g++lLk ++gft+l+p+l++ v+y+++f lLs+a++++pv+vAYa+wsG+Gt++iv+vg  ++ge+ls+ k++g+al+
      KIR65050.1  1 MAYLFLVLAIASEVAGTSLLKATHGFTRLWPTLGLAVAYLAAFGLLSLAVREIPVGVAYAMWSGLGTAAIVAVGAAFLGEPLSVTKVVGVALV 93
                    889****************************************************************************************97 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5  11.8   2.3e-08   0.00021      62     136 ..      26     101 ..       1     102 [. 0.79

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.3e-08
        EamA  62 kdwllllllgllgtvlafllffyalkktsasnasli.tslePvftlilsvlllgekltlkqllgivlillGvllil 136
                    l+  l  +++ ++af+l+  a++++++++a  + + l  + ++  ++++lge+l++++++g++l+++Gv++++
  KIR65050.1  26 FTRLWPTLGLAVAYLAAFGLLSLAVREIPVGVAYAMwSGLGTAAIVAVGAAFLGEPLSVTKVVGVALVIAGVVVLN 101
                 33677777777999*****************99888799**********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 777.71
//
Query:       KIR65051.1  [L=358]
Description: 1,2-oxophytodienoate reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-76  257.7   0.0    2.1e-76  257.4   0.0    1.1  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil
  ------ inclusion threshold ------
      0.016   14.7   1.1        3.3    7.1   0.1    2.9  3  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.4   0.0   2.4e-80   2.1e-76       3     338 ..       5     329 ..       3     333 .. 0.86

  Alignments for each domain:
  == domain 1  score: 257.4 bits;  conditional E-value: 2.4e-80
                   CS-EEETTEEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEEEE CS
  Oxidored_FMN   3 FkPikignmtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvvvq 99 
                   F  +++g  tL+nR+vmapmtr ra+ +g v+++l+a yy+qra    +li+te++ +++ ++g+ n pg++++eq+++wr +t+avhe+g+ ++ q
    KIR65051.1   5 FDAVTVGRHTLRNRVVMAPMTRSRAHGPGAVPTELMATYYAQRAG--AGLIVTEGVQPSAVGQGYLNTPGLHTAEQVAGWRRVTDAVHERGGVIFAQ 99 
                   77899**************************************98..9************************************************* PP

                   EE--GGGS..SCSTCEC..SS.ESSSSSTTT-....S...CS..-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT---- CS
  Oxidored_FMN 100 lwhlGreakseyladqevdspsdpvaldaqee...esaeevy..kkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspksnkrt 191
                   l+h Gr a+ ++ a+    +p   +a++a+ +    ++ + +  ++ l++e ++ ++ +fv AA++a++AgfDgVe hganGYLl+qFls + n+r 
    KIR65051.1 100 LMHVGRIAHPDNTAHGS--APVGASAVPAAGTivtPTGPQEFptPQPLDAEGVRATVADFVAAARNAVDAGFDGVELHGANGYLLHQFLSTNANRRD 194
                   *************9999..555555566554455555555555589*************************************************** PP

                   STTSSSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS--HHHHHHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCCTTHHHHHHC CS
  Oxidored_FMN 192 DeygGslenRarFllevvdaVkeavgeervgyRlSpedvvekgldfaetaqkivllkelekrlkdgkklalvhaaeprkrgagsvrteqekntefvk 288
                   DeygG+   R+r ++evv aV ea+g++rvg R+Sp +++++  +  ++ +++ +l +  + l     la++h+ae    ga+  +t        ++
    KIR65051.1 195 DEYGGDPTGRIRLVVEVVAAVAEAIGADRVGLRISPANPYNDIAE-DDHRETYLALVDALNPL----GLAYLHVAE----GADTEFTP------VLR 276
                   *************************************99986443.33323344444444444....59*******....66555555......666 PP

                   CCHSSEEE....E-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCC CS
  Oxidored_FMN 289 evwkkpli....tvgriadeekaaeivaegeadLvamgRefladpdlveklkkg 338
                   e w ++l+    t g ++ +e a + v++g+adLv++g  fla+pdl+++l+ g
    KIR65051.1 277 ERWAGALMlnpyTPGAWTGPE-ALKLVERGDADLVSYGALFLANPDLPRRLAGG 329
                   666666543333889999999.899999**********************9866 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1     0.053   4.8e+02      78     129 ..      44      98 ..      41     110 .. 0.68
   2 ?    7.1   0.1   0.00037       3.3       3      23 ..     163     183 ..     161     257 .. 0.77
   3 ?    5.0   0.0    0.0016        15     142     193 ..     210     268 ..     195     289 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.053
                   HHHHHTBSEEEEEBCC...GBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEE CS
  AP_endonuc_2  78 laaaLGapllvlhpGt...agagpkgseeeawerlaeslneladyaekegvklal 129
                   +a++ Ga l+v+   +    g+g+ +++    +  +++++++ d  +++g  + +
    KIR65051.1  44 YAQRAGAGLIVTEGVQpsaVGQGYLNTPGLHTAEQVAGWRRVTDAVHERGGVIFA 98 
                   6899999999999555777555555555566666666666666666666655555 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00037
                   HHHHCT-SEEEEECCTCSHHH CS
  AP_endonuc_2   3 aaaeaGfdgvElfgrdlvpvs 23 
                    a +aGfdgvEl+g++++   
    KIR65051.1 163 NAVDAGFDGVELHGANGYLLH 183
                   6889*********99998765 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0016
                   HHHHHHHHHHTTTTEEEEEEHHHHHHH......TTTHHHHHHHHHGG.EEEEEE.EESS CS
  AP_endonuc_2 142 eelarlldavdspnvgvclDtgHllia......eedvddalraladr.ikhvHikDakg 193
                   e +a++ +a++ ++vg+ + +++ +        +e + ++++al++  ++++H++ + +
    KIR65051.1 210 EVVAAVAEAIGADRVGLRISPANPYNDiaeddhRETYLALVDALNPLgLAYLHVAEGAD 268
                   77889999999999999999999999999888888888888888888999999965544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2757.11
//
Query:       KIR65052.1  [L=545]
Description: alpha-amylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-82  275.7   0.0    1.4e-81  274.7   0.0    1.4  1  Alpha-amylase   Alpha amylase, catalytic domain
    2.6e-11   43.7   2.1    4.1e-11   43.1   0.4    2.3  2  DUF3459         Domain of unknown function (DUF3459)
    0.00065   19.8   0.0     0.0015   18.6   0.0    1.6  1  Malt_amylase_C  Maltogenic Amylase, C-terminal domain
  ------ inclusion threshold ------
      0.056   12.5   0.0      0.095   11.8   0.0    1.2  1  hDGE_amylase    Glycogen debranching enzyme, glucanotransfera


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.7   0.0     3e-85   1.4e-81       1     333 [.      38     383 ..      38     387 .. 0.90

  Alignments for each domain:
  == domain 1  score: 274.7 bits;  conditional E-value: 3e-85
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHS.TTSGG CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifkspqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkk.kgepk 95 
                    GDL+Gi e+L+Yl++LGv+a+wl+P+++sp+ d gYd+ady+ +dp+fGt +d++++i++ah++g+++i+D+V+NHts++h wf  +l+  +g+p+
     KIR65052.1  38 GDLQGIRERLPYLRDLGVDALWLTPFYTSPMVDGGYDVADYRDVDPMFGTLADFDAMITDAHALGLRIIVDIVPNHTSSAHPWFVAALATaPGSPE 133
                    9***********************************************************************************998765167889 PP

                    GCCC-E........ESS-STTC-TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCCCCCCCCTTT-SEEEETTCCCTTTCCCC..... CS
  Alpha-amylase  96 rdyyiwkegk..eekeppnnwkslfdgsaweydekaqeyylhlflkklpdLnteneevrkelkdvvkfwlekgidGfRlDvvkhvskveal..... 184
                    r+ y + eg+  + + ppn+w+s+f+g+aw+    + ++ylhlf   +pdLn++++evr e +dv++fwl++g+dGfR+Dv++ + k+e+l     
     KIR65052.1 134 RARYLFAEGRgeHGELPPNDWESIFGGPAWTRVPDG-QWYLHLFDPAQPDLNWRHPEVRAEFEDVLRFWLDRGVDGFRIDVAHGMIKAEGLpdvgf 228
                    9999888888767899***************77766.79************************************************9999***** PP

                    ...................HCCHCCHHHHHHHHHHHTC.CGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HH CS
  Alpha-amylase 185 ...................esngeflheftqalnetva.srkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisak 260
                                       + + + +he+  a     +     +m v+E + ++ ++l++y   ++l     ++f +ld+  +a+           
     KIR65052.1 229 nsmtggrrqsellgkgrlpYFDQDEVHEIYRAWRPILDsYPGGRMAVAEAWAETPQRLARYIGPDELHQA--FSFDFLDATWSAD----------- 311
                    *******************7777777777777777776445789*******************9999999..5555554444444........... PP

                    HHHHHHHHHHHHS-CCCTTCEEES--TTS--HHHHTTSSTTTTHHHHHHHHHCCCTSSSEEEEETTCCCT--- CS
  Alpha-amylase 261 klkellkkwlkaleeaaeeavtflgnHDqeRilsrlgddsaeaekklklaaillltlrGvpviYyGeEigmtg 333
                     + +++++ l++ + +   ++++l nHD++R ++r+gd +   ++++++a +l+l l+G ++ Y+GeE+g+ +
     KIR65052.1 312 SFRKVIDTALAEATIVGAPTTWVLSNHDKQRHVTRYGDGE-VGLRRARAASLLMLALPGCAYLYQGEELGLPE 383
                    5678888888888888999******************999.579**************************865 PP

>> DUF3459  Domain of unknown function (DUF3459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.3   1.1e+04      62      85 ..     132     151 ..     123     154 .. 0.64
   2 !   43.1   0.4   9.1e-15   4.1e-11       1      90 [.     456     541 ..     456     542 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.3
                 ---SEEEEECT--S....SSEE-T CS
     DUF3459  62 gaagkllfsseaaraggdagrlpp 85 
                    ++ lf+ + ++    +g+lpp
  KIR65052.1 132 PERARYLFAEGRGE----HGELPP 151
                 45667777777766....788887 PP

  == domain 2  score: 43.1 bits;  conditional E-value: 9.1e-15
                 HHHHHHHHHHHHCCCTT--CGGEEEEEEECTCEEEEEEEETTEEEEEEEE-SSCGCCS-SS---SEEEEECT--S....SSEE-TTEEEE CS
     DUF3459   1 lyrdLLaLRreePaLadarrgglevavlgdgallvrwrlgdgrllrllaNLgdepvtlppegaagkllfsseaaraggdagrlppesvvv 90 
                 lyr+ L+ Rr++PaLa+ + g    +  g+g l+ r++ g+g++l++++NL+d+pv+++  g +  ++ s+e + +g+ +  lp  ++++
  KIR65052.1 456 LYRAALRARRAHPALARDADGVTWLETTGPGVLAFRRT-GGGAELTCVVNLSDAPVQID--GYGQPVVASAELTGQGT-GHVLPVDAAAW 541
                 7***************9966666666666666655555.8*******************..77777777777777776.999******99 PP

>> Malt_amylase_C  Maltogenic Amylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.4e-07    0.0015       4      39 ..     478     513 ..     476     527 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.4e-07
                     EE---S-TTEEEEEEEETTEEEEEEEESS-EEEEE- CS
  Malt_amylase_C   4 efleadnrkvlaYlReyedetilvvaNrsaqaveld 39 
                     ++le+  + vla+ R+ ++  + +v+N s+ +v++d
      KIR65052.1 478 TWLETTGPGVLAFRRTGGGAELTCVVNLSDAPVQID 513
                     7899999**************************998 PP

>> hDGE_amylase  Glycogen debranching enzyme, glucanotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.1e-05     0.095      19     110 ..      38     121 ..      34     129 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.1e-05
                   -SHHHHHHHHHHHHHTT--EEEES--EEE-TT--TTSEEEEEEE-TTT-.....SSC.HHHHHHHHHHHHHH--EEEEEE--SEEETT-CCC CS
  hDGE_amylase  19 GpleeWekvlkeikekgYnmiHftPlqelGesnSpYSiadqleldkelfeekdkeekeedveklvkklekeygllsltDvVlnHtannskwl 110
                   G l+  +++l   ++ g + + +tP+ +    +  Y +ad  ++d+ +        + +d+++++++++  +gl  ++D+V nHt++  +w 
    KIR65052.1  38 GDLQGIRERLPYLRDLGVDALWLTPFYTSPMVDGGYDVADYRDVDPMF-------GTLADFDAMITDAH-ALGLRIIVDIVPNHTSSAHPWF 121
                   677777888889999999999*************************87.......47899******987.69****************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3947.05
//
Query:       KIR65053.1  [L=353]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-39  135.2   1.8      4e-39  134.6   0.4    2.0  2  Peripla_BP_3  Periplasmic binding protein-like domain
    1.4e-19   70.6   0.0    1.8e-19   70.2   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    5.3e-13   48.5   0.1    1.2e-12   47.4   0.1    1.6  1  LacI          Bacterial regulatory proteins, lacI family
    1.7e-07   31.1   0.0    2.2e-07   30.7   0.0    1.2  1  Peripla_BP_4  Periplasmic binding protein domain
     0.0015   18.8   0.8     0.0015   18.8   0.8    2.8  2  HTH_31        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.037   13.8   0.6        0.2   11.5   0.0    2.5  2  HTH_IclR      IclR helix-turn-helix domain
       0.17   12.3   0.0       0.36   11.3   0.0    1.5  1  HTH_26        Cro/C1-type HTH DNA-binding domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   2.8e+03       1      32 [.     106     136 ..     106     140 .. 0.73
   2 !  134.6   0.4   1.6e-42     4e-39       1     166 []     171     333 ..     171     333 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHH CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasdererg 32 
                   ve L+++    i+f++   + ++ a+++r+r+
    KIR65053.1 106 VEMLLDRQVSGIVFVS-GLHADTAANHDRYRA 136
                   6778999999999999.334455677788877 PP

  == domain 2  score: 134.6 bits;  conditional E-value: 1.6e-42
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHH.TTSSS-.EEEEE-S-SS-SSHHHHH........HHHHHCC-SEEEEESSCCHHHHHHHH CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqal.eelglp.lnetvvaaddpaaaaaaraal..ll.qalklaalPtAviaasDelAlgvlqa 92 
                   v+hLv+lGhrri++i+  g+++    ++r +g+r a+ + +glp  +  + a+ + ++ ++ +aa   ll + +      t+v++ sD +Alg+++a
    KIR65053.1 171 VAHLVALGHRRIGLIT--GPDRFVPVQRRVAGWRAAMgRLAGLPeAELAELAELTLFGVEGGEAAAgrLLeRGV------TGVVCGSDLMALGAIRA 259
                   78**************..9999**********************544445555555555555555534333444......***************** PP

                   HCCTT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  93 lreaglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   +r++gl+vP dlsv+g+dds+l+a+++PplTt+rqp++ ++ aa+++l+d ++g+ ap+++ l  pelv+R+St
    KIR65053.1 260 ARQRGLSVPGDLSVVGYDDSPLMAFTDPPLTTMRQPVAAMAVAAVRALVDEINGHAAPHSEYLFRPELVVRGST 333
                   *****************************************************999999999999********8 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.0   7.2e-23   1.8e-19       4     235 ..      60     295 ..      57     318 .. 0.85

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 7.2e-23
                   EEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEE.....E.-S-GGHHHHHHHHHHT-EEEEESS--B-T. CS
  Peripla_BP_1   4 lglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidglii.....a.tsdtsfdditakaesgipvialedaidap. 92 
                   +glv+p+ld+P f    + i+ ++++ g+  +l  +  ++ ++ ++++ l+ +++ g++      a t++++ d+ +a  +  +pv++++     p 
    KIR65053.1  60 VGLVVPELDNPIFPAFAQVIESTLAQSGFTPVLCTQTPGGVTEdEYVEMLLDRQVSGIVFvsglhAdTAANH-DRYRALIARPLPVVMINGY--VPg 153
                   8*****************************99999999999999**************98333333456666.9999999999*****9987..443 PP

                   TTS-EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHH.HHTT-.GGGEEEEE-SSS.SHHHHHHHHHHHHTT-TT-SEEE- CS
  Peripla_BP_1  93 dgvPcvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaal.aeaGl.evkdvhvalgsn.diedaaealnelleshPeidaiva 186
                    + P v  dd +a e +  +L+a gh+r i l+ gp+    +++rv G++aa+ + aGl e +  ++a+ +   +e+++ a+  lle++ +   +v+
    KIR65053.1 154 IAAPFVSCDDREATELAVAHLVALGHRR-IGLITGPDRFVPVQRRVAGWRAAMgRLAGLpEAELAELAELTLfGVEGGEAAAGRLLERGVT--GVVC 247
                   589*************************.***********************94569**999999999887537999************99..9*** PP

                   SSHHHHHHHHHHHHHTT.--GGGEEEEEESSGGGHHH.....HTSSS--SEEEE CS
  Peripla_BP_1 187 indeaalGavlalkkeGrlkikeevdsfiesvvvydg.....Lkkaqdtilels 235
                   ++d +alGa++a++++G l+ +++      svv+yd      ++++  t++ ++
    KIR65053.1 248 GSDLMALGAIRAARQRG-LSVPGDL-----SVVGYDDsplmaFTDPPLTTMRQP 295
                   *****************.****999.....888887522111444444444444 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.1   4.6e-16   1.2e-12       2      44 ..       5      47 ..       4      48 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 4.6e-16
                HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB- CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYi 44
                + D+A++A VS aTVSrvLn+++ V+ etr+ V+ a++ l+Y 
  KIR65053.1  5 LSDIAQQAEVSEATVSRVLNDRPGVAPETRQAVLTALDVLGYE 47
                78****************************************6 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   8.8e-11   2.2e-07       1     222 [.      60     282 ..      60     315 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 8.8e-11
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEE.E--SSH.HHHH.HHHHHHHHTT-EEEEESTTGCTTT CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgii.vapvds.tala.palkkakaaGIpVvafdsddapsg 94 
                   +g+vv+  +np f a+ + +e+ +++ g++ ++   + +   ++ + +e +++++v gi+ v+  ++ ta++ +   ++ a+  pVv ++    + g
    KIR65053.1  60 VGLVVPELDNPIFPAFAQVIESTLAQSGFTPVLC-TQTPGGVTEDEYVEMLLDRQVSGIVfVSGLHAdTAANhDRYRALIARPLPVVMINGY--VPG 153
                   799********9999******************8.66666699*****************7777777555568999****************..99* PP

                   -CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHH...HHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTTECEEE CS
  Peripla_BP_4  95 erlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkv...lkeypgikivaevaganwdaekaqqalealltanpldgil 188
                     + +v+ d  +a el+   l+         + +++G       + r++g r++   l++ p+ ++ + ++ +    e +  a+  ll +  + g++
    KIR65053.1 154 IAAPFVSCDDREATELAVAHLVALGHR---RIGLITGPDRFVPVQRRVAGWRAAmgrLAGLPEAELAELAELTLFGVEGGEAAAGRLLERG-VTGVV 246
                   **********************99985...69999*****999999********55555577888877555447889999999999***99.***** PP

                   ESSCCHHHCHHHHHHHTTT..TSTEEEEEES-HHHH CS
  Peripla_BP_4 189 aandgmaegalealeaagl..agkvvvtgqDatpea 222
                   + +d ma+ga++a ++ gl   g+  v+g+D +p +
    KIR65053.1 247 CGSDLMALGAIRAARQRGLsvPGDLSVVGYDDSPLM 282
                   *******************87777669999988755 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.8   5.9e-07    0.0015      16      58 ..       4      45 ..       1      54 [. 0.84
   2 ?    0.8   0.5      0.24   6.2e+02      46      64 .]     201     219 ..     194     224 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.9e-07
      HTH_31 16 sqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldp 58
                ++ + A+++ vse+t+sr+ + r g + p++  a+++al++ +
  KIR65053.1  4 RLSDIAQQAEVSEATVSRVLNDRPG-VAPETRQAVLTALDVLG 45
                6779********************9.98888888888888755 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.24
      HTH_31  46 vlealaralgldpaerael 64 
                 + +a+ r+ gl++ae+ael
  KIR65053.1 201 WRAAMGRLAGLPEAELAEL 219
                 4566667777777777765 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.9e-05       0.2      20      40 ..       4      24 ..       1      25 [. 0.91
   2 ?   -1.0   0.1       0.6   1.5e+03      12      28 ..     208     223 ..     205     223 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.9e-05
                BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 20 tlselArrtglpkStvhRlLq 40
                +ls++A+++ ++ +tv+R L+
  KIR65053.1  4 RLSDIAQQAEVSEATVSRVLN 24
                8*****************996 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.6
                 -CTTBSS-BHHHHHHHH CS
    HTH_IclR  12 laeapqeltlselArrt 28 
                 la  p++  l+elA+ t
  KIR65053.1 208 LAGLPEA-ELAELAELT 223
                 5555665.688888865 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00014      0.36      13      51 ..       5      42 ..       1      43 [. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
      HTH_26 13 kseLargtgisaatlsrlvkgkpervsldtLdkiCdaLg 51
                 s+ a+++++s+at+sr ++++p  v  +t +++ +aL+
  KIR65053.1  5 LSDIAQQAEVSEATVSRVLNDRP-GVAPETRQAVLTALD 42
                6899******************9.999888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2734.41
//
Query:       KIR65054.1  [L=418]
Description: sugar ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-43  148.6   8.1    4.7e-43  148.0   8.1    1.2  1  SBP_bac_8   Bacterial extracellular solute-binding protein
    1.4e-30  107.4  12.5    1.4e-30  107.4  12.5    1.5  2  SBP_bac_1   Bacterial extracellular solute-binding protein
    5.1e-06   26.4   4.3    1.3e-05   25.0   4.0    1.9  2  SBP_bac_11  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.0   8.1   7.8e-47   4.7e-43       3     272 ..      60     356 ..      59     369 .. 0.84

  Alignments for each domain:
  == domain 1  score: 148.0 bits;  conditional E-value: 7.8e-47
                 HHHHHHH-TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GG.GSTTHHH-.HHHHHTT--TS.----EEEEEEE-EEEE CS
   SBP_bac_8   3 akefekktgvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladls.dldnlddl.tdalaavgydgklygvPyasetpyvliy 99 
                 a++f +++gv+v+v+ + s dl++++ +a ++g++pd  vv++++d++++l+++g++ ++    d+  ++ ++a++av+++g+lygvPya+e+  +li 
  KIR65054.1  60 AEKFGQENGVTVEVQAV-SKDLQTNFVTASQQGSGPD--VVVGAHDWIGNLVQNGAIDPVQlAADQKSGFnETAVKAVTFNGQLYGVPYAMEN-LALIR 154
                 89************777.69***************96..678889*************9997556666662669*******************.8**** PP

                 EHHHHHHS.---BHHHHHHHHHHHHHH-..................SEGG.---GGGGGGTHHETTEE-.--H...HHH.HHHHHHHHHHHHTT-EE.. CS
   SBP_bac_8 100 nkdllekaedpktwdellaaakklkgkf..................glpd.pasgwlqaallakdgksl.dddg.gkdglkealellkklkdngkty.. 175
                 n++l+++a  pkt+++l+aa kklk                     ++p   ++g ++++  a +g++  +d g gk++  +a+++++kl ++g     
  KIR65054.1 155 NTELAPEA--PKTIEDLVAAGKKLKADKkaseilclqsgqngdayhIYPLyTSAGGYLFGTAA-NGDYDpKDLGvGKPESIAAFQKIAKLGEKGEGAlk 250
                 ******86..**************855557999988887777765544331233555666666.6665516666********************86655 PP

                 ..-S..--SSTTTTTSBSEEEE-TTHHHHHH-TTTSEEEE.--.....S-.-EEEEEEEEEEBTTS-HHHHHHHHHH.HHHTTSHHHHHHHHHH---BS CS
   SBP_bac_8 176 ..dtgadavsefanGevaftingswdiaaaqkagkklgai.vp.....kq.gsfaggkglavpknaknedlaAldFl.kwltspenqaalaektgyipv 264
                    t ++ ++ f+ ++ af ++g+w+ia+a+ka+  + +  vp     k+ ++f+g++ ++v ++ kn++l A++F+ ++ t pe   al+++   +p+
  KIR65054.1 251 rsITPENSIATFTGKKCAFLVSGPWAIADAKKANISYDISpVPgfaggKEaQPFVGVQAFYVAAKGKNKAL-AQEFVaNYTTKPELAVALYNAEPRPPA 348
                 533558999*******************************878887774425******************9.****77********************* PP

                 -S-TTTHH CS
   SBP_bac_8 265 nksaalsp 272
                 +++a ++ 
  KIR65054.1 349 LTAALDQV 356
                 ***99633 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4  12.5   2.3e-34   1.4e-30       7     311 ..      53     332 ..      48     336 .. 0.87
   2 ?   -2.8   0.2      0.82   4.9e+03      48      84 ..     358     388 ..     350     405 .. 0.62

  Alignments for each domain:
  == domain 1  score: 107.4 bits;  conditional E-value: 2.3e-34
                 HHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE. CS
   SBP_bac_1   7 gaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkilds. 104
                 +aal+ ++ ++f + ++g++Ve++ v s +l++++ +a ++G+gp Dv+ +++dwi+ l+++g+  p++  ++ +             s + ++   + 
  KIR65054.1  53 TAALKPFA-EKFGQ-ENGVTVEVQAV-SKDLQTNFVTASQQGSGP-DVVVGAHDWIGNLVQNGAIDPVQLAADQK-------------SGFNETAVKAv 134
                 45666666.***99.67*********.******************.**********************9999999.............44555555555 PP

                 EE...ES.EEEEE.EEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT....HHCSHHHH CS
   SBP_bac_1 105 kv...ly.vPlya.argliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgg....gldnpegv 194
                 ++   ly vP+ + + +li N+ l  +    +p+t ++lv+a+kklk++ k+   ++   s+ +  +y  ++l+ s+gg++f+  ++     +d ++g+
  KIR65054.1 135 TFngqLYgVPYAMeNLALIRNTELAPE----APKTIEDLVAAGKKLKADKKAS-EILCLQSGQNGDAYHIYPLYTSAGGYLFGTAANgdydPKDLGVGK 228
                 66789*******55******9999994....479******************9.88888888888888889***********99999776633444444 PP

                 S.HHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE..EEEEEEE CS
   SBP_bac_1 195 t.aatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi..lgaygla 290
                   ++++++k     +l ++  g+ + + + ++  a f+  ++a++++g+wa             +ad++k+++ +++ p+P++ ggk ++  +g++ + 
  KIR65054.1 229 PeSIAAFQKIA---KLGEKGEGALKRSITPENSIATFTGKKCAFLVSGPWA-------------IADAKKANISYDISPVPGFAGGKEAQpfVGVQAFY 311
                 45444444444...7889*********************************.............***************************999999** PP

                 EBTTCSTHHHHHHHHHHHTSH CS
   SBP_bac_1 291 ipkgsknpeaAkkFldfllsp 311
                 + ++ kn++ A++F++ ++++
  KIR65054.1 312 VAAKGKNKALAQEFVANYTTK 332
                 ***************988875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.82
                 TSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTEC CS
   SBP_bac_1  48 GdgpaDviavdndwiarlakaglllpldpyvkaylap 84 
                 G+ p D+++      ++  k+g++lp  p ++a + p
  KIR65054.1 358 GSDP-DLAKF-----TEAGKNGQVLPAIPAMAAIWDP 388
                 3335.77666.....6666667666666655555444 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   4.0   2.2e-09   1.3e-05       7     180 ..      50     287 ..      44     338 .. 0.66
   2 ?   -0.4   0.1      0.13   7.8e+02       3      34 ..     312     343 ..     310     363 .. 0.62

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2.2e-09
                 SSTHHHHHHHHHHHHHHH---EEEEESSHHHHHH...HHHHH..-SEEEESSH.HHHHHHHHGGGGG........................GG-EEEEE CS
  SBP_bac_11   7 gslaaalrelaaaFeahtgvkvevsaggsgklar...qiadgarpDvwipassawlellaaaglvqa........................esavplas 78 
                    +aal+  a++F +++gv+vev+a++   + +   + ++g+ pDv++ a  +w+ +l+++g++++                          +vp+a 
  KIR65054.1  50 DKRTAALKPFAEKFGQENGVTVEVQAVSKDLQTNfvtASQQGSGPDVVVGAH-DWIGNLVQNGAIDPvqlaadqksgfnetavkavtfngqLYGVPYAM 147
                 555799***********************98888333557777********7.8****************99999999999988888888888888888 PP

                 EEEEEEESTT-.TT---SHHHHHHS........S-.-EEEE--T-TTTTHH.HHHHGGG--....................HHHHHHHHHTEEEEESSH CS
  SBP_bac_11  79 splviavpkgn.pkkikgwadLlkp........gl.klavadPttspsGlaalalleaaga....................qellkalekkvvklgess 147
                   l+++ +++  p+ +k+++dL ++        +  ++   +  +++ ++ ++ l++ ag+                    +e++ a++k ++klge  
  KIR65054.1 148 ENLALIRNTELaPEAPKTIEDLVAAgkklkadkKAsEILCLQSGQNGDAYHIYPLYTSAGGylfgtaangdydpkdlgvgkPESIAAFQK-IAKLGEKG 245
                 888888888866889999999999866555554224566666666666667777777665555555555556666666666667666553.44455555 PP

                 HHHHHH.........HHTTT-SEEEEEHHHHH..HSTTSSEE CS
  SBP_bac_11 148 rqllta.........veageadagivyeseakaaengdklea 180
                 + +l++         + +g+  a++v   +a+a ++++++++
  KIR65054.1 246 EGALKRsitpensiaTFTGKKCAFLVSGPWAIADAKKANISY 287
                 555555444444432223444455555555555555555555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.13
                 EEE-SSTHHHHHHHHHHHHHHH---EEEEESS CS
  SBP_bac_11   3 vaaagslaaalrelaaaFeahtgvkvevsagg 34 
                 vaa g  +a  +e +a+++ ++++ v++  ++
  KIR65054.1 312 VAAKGKNKALAQEFVANYTTKPELAVALYNAE 343
                 44444444444488888888888766655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2866.53
//
Query:       KIR65055.1  [L=545]
Description: multiple sugar transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-36  124.6   0.7    2.3e-36  123.8   0.1    1.8  2  TM_PBP2_N     N-terminal of TM subunit in PBP-dependent ABC t
    5.5e-18   65.3  17.2    5.5e-18   65.3  17.2    2.2  3  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.044   13.8   0.0      0.066   13.2   0.0    1.2  1  MalF_P2       Maltose transport system permease protein MalF 


Domain annotation for each model (and alignments):
>> TM_PBP2_N  N-terminal of TM subunit in PBP-dependent ABC transporters
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8   0.1   3.8e-40   2.3e-36       1      84 []     101     184 ..     101     184 .. 0.99
   2 ?   -3.4   0.0       1.8   1.1e+04      10      20 ..     496     506 ..     495     510 .. 0.79

  Alignments for each domain:
  == domain 1  score: 123.8 bits;  conditional E-value: 3.8e-40
   TM_PBP2_N   1 llLlvfqvfpvlyTistafTNyGdGhrgtkeeaiaaiqassvkrvedskeYalsvatkgsettgdlvllltdpetgkvsaGdae 84 
                 l+L++fqvfpvlyT+stafTN+GdGhrg+k++a+ aiq+ssvk+v++s+eYalsvat g+++tg+lv+l+tdp+tg+vsaGda+
  KIR65055.1 101 LFLIAFQVFPVLYTASTAFTNFGDGHRGSKDDAVVAIQSSSVKQVPGSTEYALSVATAGDPATGALVFLVTDPATGAVSAGDAD 184
                 7********************************************************************************986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.8
   TM_PBP2_N  10 pvlyTistafT 20 
                  + yT ++af 
  KIR65055.1 496 LITYTYRLAFG 506
                 589****9996 PP

>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.4      0.54   3.2e+03     111     154 ..      38      75 ..      29     120 .. 0.51
   2 ?   -2.7   0.0      0.72   4.3e+03     104     124 ..     305     325 ..     303     329 .. 0.84
   3 !   65.3  17.2   9.3e-22   5.5e-18       1     173 [.     331     530 ..     327     539 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.54
  BPD_transp_1 111 itglilafggllggavlleflgswpGlgtllleailgydyseis 154
                   +tgl++ +++l   a ++++ +       +l+ea+ +  +++ +
    KIR65055.1  38 ATGLVVKVILLGLVAGIALWAA------FPLVEAEKWVGLALLA 75 
                   5555554444433333333333......3444444444443333 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.72
  BPD_transp_1 104 Pnalppiitglilafggllgg 124
                   Pn+  p++ +l+++f++++g 
    KIR65055.1 305 PNISGPFFGTLLWNFAFAIGS 325
                   899999999999999999886 PP

  == domain 3  score: 65.3 bits;  conditional E-value: 9.3e-22
  BPD_transp_1   1 gillGilaa.lnrnkkldkllrpliivllslPsfvlaillvlvf............vilsilg...hlilpviillllsaapyvrlirraalrslpk 81 
                   g++++i +a  +++ ++++l r+l i+++++Psf++++++  +f               +++g   ++  +v+++ l+   py++l+  +al+++pk
    KIR65055.1 331 GLGMAIALAlHSPRMRGTNLYRVLLILPYAMPSFAMLLVWRDMFntdfglinnlfgLGVDWFGqdwSARAAVLLVQLWLGYPYMFLVATGALQAIPK 427
                   344445555989999********************999999999************6666666220444447888899999**************** PP

  BPD_transp_1  82 dlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG.......lgtllleailgydyseis....nggvlalviavll 167
                   +l ea  ++Gas+wq fr v+lP++l  + ++li +f++++++  ++ +++ +++        g + l ++  y +++++    +g+++a+ i++++
    KIR65055.1 428 ELTEATSVDGASPWQSFRAVTLPLLLVALSPLLIASFAYNFNNINAIWLTTEGGPfpadnprNGATDLLITYTYRLAFGAqgaeFGMAAAVSIFIFA 524
                   ***********************************************99998777**9**9999999999999999999999884444444444444 PP

  BPD_transp_1 168 lnlvad 173
                   +++ + 
    KIR65055.1 525 IVATVS 530
                   433333 PP

>> MalF_P2  Maltose transport system permease protein MalF P2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.1e-05     0.066      91     164 .]     226     294 ..     217     294 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
     MalF_P2  91 lvlpd.geelrmsgLRqfaaqkplytlqedgevLtnnetgellrpnketGFYqavdekGefegeklspGftVsiG 164
                 lv+p  g +lr sgL +  + +     + + +  t++e+g++ ++++ tG +  v +    +ge+l+ G++V++G
  KIR65055.1 226 LVVPTaGGALRSSGLSRAYEGRAIRAYDAGCDCVTDSESGKRWTADEATGSF--VAA----DGERLAQGWQVNVG 294
                 5566657777777775444444333345677789******************..888....67***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3574.00
//
Query:       KIR65056.1  [L=300]
Description: sugar ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-18   66.6  20.3    2.3e-18   66.6  20.3    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.045   13.4   0.8      0.045   13.4   0.8    2.7  3  DUF3096       Protein of unknown function (DUF3096)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   4.0       0.1   9.4e+02      10      65 ..      17      99 ..      13     105 .. 0.58
   2 !   66.6  20.3   2.5e-22   2.3e-18       2     183 ..     102     293 ..     101     295 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.1
  BPD_transp_1 10 lnrnkkldkl.....lrpliivllslPsfvlaillvlvf.........................vilsilghlilpviillllsaa 65
                  ++rn++l ++     + +l  +++ +P   ++++l +++                         + ++++gh++   ++++ l ++
    KIR65056.1 17 RRRNRWLAQVgwrhvVGVLAVAFSLFP---ILFVLSAALnplgtlsstslvptggvsgenfanlFADTAFGHWFVNSLLIAGLASF 99
                  566666655410000223333333333...33444433366688888888999999999999988889999999885555555544 PP

  == domain 2  score: 66.6 bits;  conditional E-value: 2.5e-22
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf....vilsilg.hlilpviillllsaapyvrlirraalrslpkdlveaaral 90 
                   i+l++laa    ++++ ++++ +    +++++P f+ ++ ++l+f     ++ ++g ++ +++++l++ +a++++++++++++++lp++l e a+++
    KIR65056.1 102 IFLSSLAAyafSRMRFAGRRVGLLTLLLIQMFPQFLAIVAIFLIFttvtDLWPAIGfNTPWGLFLLYMGGALGVNTWLMKGFFDTLPRELDESATMD 198
                   788899999988888899999999999999*****955555555566776666777477777*********************************** PP

  BPD_transp_1  91 GasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG.....lgtllleailgydyseisnggvlalviavll.lnlvadilqrlldp 181
                   Gas+ q+f++++lP+++p ++ +++l+f+g +++++++  +++++      +g++ l a + ++      g+++a+++++++  +lv+ +lqr++  
    KIR65056.1 199 GASHAQVFFRIMLPLVAPILAVTALLSFIGTINEFMIANVFLTDTEsktlaVGMFGLVAGERNNNF----GMFAAGTLLTAVpTVLVFQLLQRYIVS 291
                   ******************************************999777877776666666666666....666666666555167788889999876 PP

  BPD_transp_1 182 rv 183
                    +
    KIR65056.1 292 GL 293
                   65 PP

>> DUF3096  Protein of unknown function (DUF3096)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.8   5.1e-06     0.045       9      35 ..     128     153 ..     122     155 .. 0.84
   2 ?   -2.8   0.1       0.6   5.4e+03      11      20 ..     217     226 ..     216     228 .. 0.56
   3 ?   -3.0   0.2      0.67     6e+03      28      35 ..     249     256 ..     248     257 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.1e-06
     DUF3096   9 iLILimPRLLNyiVAiYLIviGllGLl 35 
                 +LI ++P +L  iVAi+LI+  +++L 
  KIR65056.1 128 LLIQMFPQFLA-IVAIFLIFTTVTDLW 153
                 79999*****6.9*********99986 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.6
     DUF3096  11 ILimPRLLNy 20 
                 IL++  LL++
  KIR65056.1 217 ILAVTALLSF 226
                 5555555655 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.67
     DUF3096  28 viGllGLl 35 
                 ++G+ GL+
  KIR65056.1 249 AVGMFGLV 256
                 68999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2034.58
//
Query:       KIR65057.1  [L=196]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-18   66.3   0.0    2.7e-18   65.5   0.0    1.5  1  TetR_N     Bacterial regulatory proteins, tetR family
    1.6e-12   47.7   1.1    1.6e-12   47.7   1.1    1.7  2  TetR_C_6   BetI-type transcriptional repressor, C-terminal
    8.1e-11   42.2   1.2    8.1e-11   42.2   1.2    2.1  2  TetR_C_11  Tetracyclin repressor-like, C-terminal domain
     0.0017   18.6   4.5     0.0017   18.6   4.5    2.5  2  TetR_C_31  Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
      0.014   15.3   0.7       0.63   10.0   0.1    2.6  2  TetR_C_14  MftR C-terminal domain
      0.097   12.8   0.4        2.1    8.5   0.0    2.2  2  TetR_C_21  Tetracyclin repressor-like, C-terminal domain
       0.11   12.4   0.0       0.19   11.7   0.0    1.3  1  Ferritin   Ferritin-like domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   1.1e-21   2.7e-18       1      47 []      16      62 ..      16      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 1.1e-21
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                IldaAr++f + G+++t+++++ ++AG+s ga+YryFpsK +L+ a+
  KIR65057.1 16 ILDAARRCFLRDGFHRTSMQDVIAEAGLSVGAVYRYFPSKNDLITAI 62
                9******************************************9886 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       3.2   8.1e+03      40      50 ..      10      20 ..       5      34 .. 0.54
   2 !   47.7   1.1   6.2e-16   1.6e-12      26     101 ..     110     185 ..      87     195 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.2
                HHHHHHHHHHH CS
    TetR_C_6 40 aelqrenyarl 50
                a+++++  ++ 
  KIR65057.1 10 AARRQQILDAA 20
                44433333333 PP

  == domain 2  score: 47.7 bits;  conditional E-value: 6.2e-16
                 HHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHH.TTSCTTSTHHHHHHHHHHHHHHHHHHHHHTCTTCHHHH CS
    TetR_C_6  26 wlafwaeaardpelaelqrenyarlrsnlrallaelae.gglradadaeaaAerlaAlidGLwlraalapeeldaer 101
                  l++w+ea+rdp+lae  r++y+rlr +++ l a+++e g+l++dad+ea+ ++l  li G  ++ +l  +  d+++
  KIR65057.1 110 ALQVWSEAQRDPALAEFVRATYDRLRGHFAVLAARAREtGELPPDADPEAVGAALFGLIPGYFTQKILT-GAPDRAT 185
                 689**************************************************************9998.4444444 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.38   9.8e+02      41      61 ..       6      26 ..       3      42 .. 0.61
   2 !   42.2   1.2   3.2e-14   8.1e-11      29     104 ..     108     185 ..      85     193 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.38
   TetR_C_11 41 dpelaealrerlleprraalr 61
                d++la+++++ l + rr  lr
  KIR65057.1  6 DEHLAARRQQILDAARRCFLR 26
                667777766644444444444 PP

  == domain 2  score: 42.2 bits;  conditional E-value: 3.2e-14
   TetR_C_11  29 allrallaeaqrdpelaealrerlleprraalravlrrAvarGelradadvelvldlllgpl...lyrllltgepldda 104
                  l  ++ +eaqrdp+lae +r+  +++ r +++ + +rA++ Gel++dad+e+v ++l+g++   + + +ltg+p  ++
  KIR65057.1 108 PLALQVWSEAQRDPALAEFVRA-TYDRLRGHFAVLAARARETGELPPDADPEAVGAALFGLIpgyFTQKILTGAPDRAT 185
                 56778999**************.9************************************9744345556666555555 PP

>> TetR_C_31  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.069   1.8e+02      23      48 ..       8      33 ..       3      50 .. 0.70
   2 !   18.6   4.5   6.5e-07    0.0017      28     105 ..     111     194 ..      86     196 .] 0.66

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.069
                HHHHHHHHHHHHCCSCHHHHHHHHHH CS
   TetR_C_31 23 rtlAryelfleaarrPeLraalarlr 48
                 ++Ar   +l aarr  Lr+ ++r+ 
  KIR65057.1  8 HLAARRQQILDAARRCFLRDGFHRTS 33
                56677777777777777777776654 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 6.5e-07
                 HHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHH...HHCS.S...-HHHHHHHHHHHHHHHHHHHHHSGTS-H.HHHHHHHHHHHT CS
   TetR_C_31  28 yelfleaarrPeLraalarlrralrealaalla...alGl.p...dpeeaarllvaaldGllldrLagpaadp.raevrellrall 105
                 +  + ea+r+P+L++ +++++++lr + a l a   + G  p   dpe+ +++l+ ++ G   + + ++  +p ra   + ++ ll
  KIR65057.1 111 LQVWSEAQRDPALAEFVRATYDRLRGHFAVLAArarETGElPpdaDPEAVGAALFGLIPGYFTQKILTG--APdRATYLAGIHTLL 194
                 56788****************888887666665222445554444556666667777777777777776..333566666666555 PP

>> TetR_C_14  MftR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1      0.03        76      70     107 ..      59      97 ..      32     101 .. 0.83
   2 ?   10.0   0.1   0.00025      0.63      36     105 ..     121     192 ..     117     196 .] 0.74

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHHHHHHHHHHH-TT.S-HHHHHHHHHHHH CS
   TetR_C_14  70 prtvaaavlaaalaayeqwladed.adlaelLdealdll 107
                  +++a  v++ a  ++    a++   +l+e Ld+al ++
  KIR65057.1  59 ITAIAQSVVGGADQVFAGLTATDPpLPLVEALDRALTYV 97 
                 567888888888888888887777799*******99876 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00025
                 HHHHHHHHHHHHHHHHHHH..HHHHHHHTS-TTSHHHHHHHHHHHHHHHHHHHHHHH-TTS-HHHHHHHHHH CS
   TetR_C_14  36 PaLqAhstlryaawrevvA..efvAeRtgtdaddlvprtvaaavlaaalaayeqwladedadlaelLdeald 105
                 PaL       y++ r + A  ++ A+ tg+ + d  p +v+aa+ + +   + q + + + d a++L+    
  KIR65057.1 121 PALAEFVRATYDRLRGHFAvlAARARETGELPPDADPEAVGAALFGLIPGYFTQKILTGAPDRATYLAGIHT 192
                 6666666666666665544004456789********************999999998888888888776555 PP

>> TetR_C_21  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.5     0.088   2.3e+02      93     111 .]       4      22 ..       1      22 [. 0.89
   2 ?    8.5   0.0   0.00081       2.1      22      85 ..     111     175 ..     106     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.088
   TetR_C_21  93 adaeerarrraavveavrR 111
                 +++e+ a+rr+++ +a+rR
  KIR65057.1   4 VSDEHLAARRQQILDAARR 22 
                 578899************9 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00081
   TetR_C_21  22 LltWarLeraeeeleeeeeraesleekvaair.aaQraGtvdaswkpedlltlvlalasawaaap 85 
                 L++W++ +r  + +e + ++ ++l+  +a ++ +a ++G++ ++ +pe + +++++l+   ++++
  KIR65057.1 111 LQVWSEAQRDPALAEFVRATYDRLRGHFAVLAaRARETGELPPDADPEAVGAALFGLIPGYFTQK 175
                 89999999998888888888899999999986258999******************998777766 PP

>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.4e-05      0.19      22      68 ..     112     158 ..     107     173 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.4e-05
                 HHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS....SHHH CS
    Ferritin  22 awyvkgpgleglaeffdeqaeeerehadklaerilalGgtpvltrae 68 
                   + + +  ++laef +  ++  r+h+  la r ++ G+ p+  + e
  KIR65057.1 112 QVWSEAQRDPALAEFVRATYDRLRGHFAVLAARARETGELPPDADPE 158
                 56777778899****************************99866655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1407.18
//
Query:       KIR65058.1  [L=113]
Description: hypothetical protein TK50_05960 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        0.1   12.4   1.4       0.24   11.2   1.4    1.6  1  DUF5353        Family of unknown function (DUF5353)
       0.66    9.6   3.4        0.5   10.0   0.4    1.9  2  CPP1-like      Protein CHAPERONE-LIKE PROTEIN OF POR1-like
        2.1    8.8  10.3        1.3    9.5   0.8    2.5  2  Cyd_oper_YbgE  Cyd operon protein YbgE (Cyd_oper_YbgE)


Domain annotation for each model (and alignments):
>> DUF5353  Family of unknown function (DUF5353)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.4   3.9e-05      0.24      19      50 ..      17      48 ..       7      51 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.9e-05
     DUF5353 19 agLGfgAYrkyarGeLtwkvvglwagavGafa 50
                a+L  gA  +y +G+L  + ++lw +++G++ 
  KIR65058.1 17 ALLLGGAIAQYVSGRLRINAAMLWGSVIGLLT 48
                4555599**********************985 PP

>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.7      0.07   4.2e+02     145     169 ..       7      31 ..       2      48 .. 0.68
   2 ?   10.0   0.4   8.3e-05       0.5     101     154 ..      42     103 ..      33     111 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.07
   CPP1-like 145 vlltlvgLvvGlllGsllasllqvd 169
                 vll + ++ ++lllG+++a++++  
  KIR65058.1   7 VLLYVHLIGFALLLGGAIAQYVSGR 31 
                 5555666677888999999888665 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 8.3e-05
   CPP1-like 101 avflvlavltlvapaes.........vpalllalglgasiyflnrKekklgravlltlvgLvv 154
                 +v ++l+++ l ap  +         v++l+lal l++ ++f  rK++++ r   l++vgL +
  KIR65058.1  42 SVIGLLTGIGLSAPLRDgdepapaklVTKLVLAL-LIFVMVFFSRKRETVNRGHFLAIVGLTL 103
                 5667777777777777777788887778888888.4555667789999999999999999865 PP

>> Cyd_oper_YbgE  Cyd operon protein YbgE (Cyd_oper_YbgE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   3.0     0.019   1.1e+02      32      52 ..      32      52 ..       3      55 .. 0.72
   2 ?    9.5   0.8   0.00021       1.3       6      44 ..      71     109 ..      68     112 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.019
  Cyd_oper_YbgE 32 hgllllllwavcagvvhGvGF 52
                     +  ++lw+  +g+  G+G 
     KIR65058.1 32 LRINAAMLWGSVIGLLTGIGL 52
                   4566789************97 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00021
  Cyd_oper_YbgE   6 lllAlalaavvlwdpelfaaatsglshgllllllwavca 44 
                    l+lAl+++++v++  ++ + + +++ ++++l+l+ a  a
     KIR65058.1  71 LVLALLIFVMVFFSRKRETVNRGHFLAIVGLTLVNAAVA 109
                    9************************99999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 876.99
//
Query:       KIR65059.1  [L=356]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-55  186.2   5.0      3e-54  184.1   5.0    1.8  1  Bmp       ABC transporter substrate-binding protein PnrA-like


Domain annotation for each model (and alignments):
>> Bmp  ABC transporter substrate-binding protein PnrA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.1   5.0   1.7e-58     3e-54       4     270 ..      40     317 ..      37     350 .. 0.88

  Alignments for each domain:
  == domain 1  score: 184.1 bits;  conditional E-value: 1.7e-58
                 EEEECSS-TTTSCHHHHHHHHHHHHHHHC.TTEEEEEEEEC.GGGHHHHHHHHHHCTT-SEEEEESCCHHHHHHHHHHH-TTS-EEEESS--TT-STTE CS
         Bmp   4 vavlvegtidDksfnessyeGirrlkkeq.nieliskesslltdedyiadlknlkeegsdlivatgfalqdalqevssdfpkvkFliiDavvekeyknv 101
                  +v+++g idDksfn+s+++G+++++k + ni++++  s++  ++dy+ +l +  +++ d+i a+g  + da++++++ +p+++F+i+D+  +++  nv
  KIR65059.1  40 CMVTDVGGIDDKSFNTSAWKGLQEAQKANsNIDIKYVASKA--EADYEVNLTQYVNQKCDFILAVGGLMGDATSKIAKANPNQQFGIVDSKLPET--NV 134
                 69***************************************..7***************************************************..** PP

                 EEEEE-HHHHHHHHHHHHHHHHHCTTTTEECSS-SCCCHHCHHHHHHHHHHH-TT-EEEEEE............-SSSS-HHHHHHHHHHHHHCT--EE CS
         Bmp 102 lsvaFrseegaFLaGvaaAlmsktnkigfvgGveipvvksfingFeaGikyvnpdievvvkv............agtfsDakkgkslAsslykegvdvi 188
                 + ++F  +++aF aG++aA msk++k g  gG +ip v+ f++gF+ G++y n+    +v+v            ++ f +++ gk++++ l+ +g+d+i
  KIR65059.1 135 YPMQFDTAQAAFQAGYLAAGMSKSGKVGTYGGLPIPPVTIFMDGFADGVAYYNKTKSKNVQVlgwnketqkgsfTNDFVKQDEGKKVSDTLVAQGADII 233
                 *****************************************************988777776222222222222567889999**************** PP

                 EEE-GGGHHHHHHHHHHHCHCTEEEEEES--CGCSTT..CCEEEEEEEHHHHHHHHHHHHHCCT---TTEEEEE-CCCTSEEE- CS
         Bmp 189 fpaagkagkgvieaakelglsnyvIgvdkdqsylape..nvitsiiknvedlvvsiiekvakgevlaggevitlglkegvvgld 270
                 +p+ag+ag g  +aa+  g ++ +I+vd d+ +++p+  + +t+++kn++d+v +++ k+a+ge+l+ +      l + +v + 
  KIR65059.1 234 MPVAGGAGLGTTAAAQASGGKYSAIWVDADGCESTPNcpALLTTVVKNIADAVKEAVVKAAGGEKLQASPGFVGTLANNGVSIA 317
                 *********************9*********99999855799***********************9998877777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2519.24
//
Query:       KIR65060.1  [L=511]
Description: heme ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-48  164.8   0.0    3.3e-28   98.9   0.0    2.4  2  ABC_tran     ABC transporter
    4.7e-07   29.9   0.2      0.012   15.4   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00059   19.5   0.1      0.018   14.8   0.0    2.7  3  AAA_29       P-loop containing region of AAA domain
     0.0067   16.3   0.0      0.025   14.5   0.0    1.9  2  RsgA_GTPase  RsgA GTPase
     0.0088   15.8   0.5      0.038   13.7   0.1    2.2  2  AAA_30       AAA domain
  ------ inclusion threshold ------
      0.064   13.7   0.0       0.11   13.0   0.0    1.2  1  AAA_23       AAA domain
      0.078   12.4   0.0        2.6    7.4   0.0    2.5  3  SMC_N        RecF/RecN/SMC N terminal domain
      0.099   12.7   0.0        0.4   10.8   0.0    2.0  1  MMR_HSR1     50S ribosome-binding GTPase
       0.13   12.0   0.2       0.72    9.6   0.0    2.2  3  MukB         MukB N-terminal
       0.13   12.3   0.0        0.8    9.7   0.0    2.1  2  Dynamin_N    Dynamin family
       0.16   11.6   0.0       0.65    9.6   0.0    1.7  2  AAA_15       AAA ATPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.0     2e-31   3.3e-28       9     137 .]       2     146 ..       1     146 [. 0.97
   2 !   63.7   0.0   1.5e-20   2.4e-17       2     136 ..     250     405 ..     249     406 .. 0.95

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 2e-31
                 ETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH...................HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxx RF
    ABC_tran   9 kegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren...................esdeeiek 87 
                 ++ge++a++GenGaGKStL+++l+gl++p+eGeil+dg++lk   +     + ig+++q+  l p  tv+en                    +++e+++
  KIR65060.1   2 EPGEIHALLGENGAGKSTLMNVLYGLYQPDEGEILVDGTPLKLkGPSDAIAAGIGMVHQHFMLVPVFTVAENvmlgaeqvkggiagfldrrRARREVAE 100
                 79****************************************988999***************************************999888888*** PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 + ++++l  ++d v+    + L  G +qrv++++al ++ +ll+lDEpta
  KIR65060.1 101 VSQRYNLRVDPDAVI----EDLPVGIQQRVEIVKALTRDVDLLILDEPTA 146
                 *********9****9....*****************************97 PP

  == domain 2  score: 63.7 bits;  conditional E-value: 1.5e-20
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................. 79 
                 + v+l++++ge++++ G  G G + L+++++gl    +G+++ldg++++   ++++lr+ +g++p++   + l +e +v+en                 
  KIR65060.1 250 DGVDLTVHAGEVLGVAGVQGNGQTELIEAIMGLRPVLAGTVTLDGEQVHGwSTKKVLRAGVGYVPEDrsvDGLVKEFSVAENlvldiydrppfgrglsl 348
                 789***********************************************89999************9999999*********************9999 PP

                 HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + d+ ++ a++++++ ++++  ++    +LSgG +q+v +ar l +  kl+++  pt
  KIR65060.1 349 QPDAIASSARERIEQFDVRTPSADAPVGTLSGGNQQKVIVARELSRPLKLFIAAQPT 405
                 99999************9999999999*******************99999987776 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.3e-06     0.012       2      24 ..       7      29 ..       6      57 .. 0.80
   2 !   12.5   0.0   5.8e-05     0.095     246     297 ..     127     175 ..      98     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.3e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldllar 24
                 +l G Ng+GKS+L+  l++l +
  KIR65060.1  7 HALLGENGAGKSTLMNVLYGLYQ 29
                689*****************975 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.8e-05
      AAA_21 246 alltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  ++ al r+    +ll++DEp + L P+ +++ll+++++l++ g  +++ TH
  KIR65060.1 127 EIVKALTRDV---DLLILDEPTAVLTPQETEELLTVMRSLKAAGKSIVFITH 175
                 5555666656...9***********************999999********* PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-05     0.018      22      40 ..       4      22 ..       1      33 [. 0.79
   2 ?   -3.2   0.0       4.6   7.4e+03      38      50 ..     140     152 ..     140     154 .. 0.83
   3 ?    1.5   0.0      0.16   2.6e+02      13      43 ..     250     280 ..     247     283 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
      AAA_29 22 kgatlltGpsGsGKSTllD 40
                 +++ l G++G+GKSTl+ 
  KIR65060.1  4 GEIHALLGENGAGKSTLMN 22
                45889************94 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.6
      AAA_29  38 llDAiqalLvpak 50 
                 +lD  +a+L+p++
  KIR65060.1 140 ILDEPTAVLTPQE 152
                 688889*****87 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.16
      AAA_29  13 dghtieidlkgatlltGpsGsGKSTllDAiq 43 
                 dg +++++  ++  ++G +G+G + l+ Ai+
  KIR65060.1 250 DGVDLTVHAGEVLGVAGVQGNGQTELIEAIM 280
                 566777885568889**************97 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.5e-05     0.025     100     122 ..       5      27 ..       2      38 .. 0.83
   2 ?   -3.1   0.0       3.9   6.4e+03      99     121 ..     259     281 ..     247     291 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
                  SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpe 122
                  ++ +l+G+ G+GKStL+n+l + 
   KIR65060.1   5 EIHALLGENGAGKSTLMNVLYGL 27 
                  6889***************9875 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.9
                  TSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallp 121
                  +++  ++G  G G + Li+a+++
   KIR65060.1 259 GEVLGVAGVQGNGQTELIEAIMG 281
                  46677889999999999999876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   2.3e-05     0.038      19     122 ..       5     173 ..       1     177 [. 0.69
   2 ?   -2.7   0.0       2.5   4.1e+03      15      38 ..     256     279 ..     242     288 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.3e-05
      AAA_30  19 rvavltGpAGtGKttalkalreaweaa.g......grviglAptgkaAkvLa...................eelgieastiakllkrlk.......... 81 
                  +++l G  G+GK+t++++l  +++ + g       ++ +  p+ + A+ ++                    +++     ia +l+r +          
  KIR65060.1   5 EIHALLGENGAGKSTLMNVLYGLYQPDeGeilvdgTPLKLKGPSDAIAAGIGmvhqhfmlvpvftvaenvmLGAEQVKGGIAGFLDRRRarrevaevsq 103
                 578999*******************99669999985555666666666666644333333333333322112222222334444444447777777777 PP

      AAA_30  82 .........................grarlepg.tllivDEagmv....dtkqlaallkaaekagakvilv 122
                                            ++l+++ +lli DE   v     t++l ++++++++ag +++++
  KIR65060.1 104 rynlrvdpdaviedlpvgiqqrveiV-KALTRDvDLLILDEPTAVltpqETEELLTVMRSLKAAGKSIVFI 173
                 77799999999999999999999863.46677779999999988877777888888888888888888876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.5
      AAA_30  15 tsgdrvavltGpAGtGKttalkal 38 
                  +   v  + G+ G G t +++a+
  KIR65060.1 256 VHAGEVLGVAGVQGNGQTELIEAI 279
                 334457788888888888888876 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.7e-05      0.11      23      39 ..       8      24 ..       4      34 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.7e-05
      AAA_23 23 lItGpNGaGKTTildAi 39
                ++ G+NGaGK+T+++ +
  KIR65060.1  8 ALLGENGAGKSTLMNVL 24
                689***********965 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0016       2.6      26      44 ..       6      24 ..       3      29 .. 0.85
   2 ?    0.6   0.0       0.2   3.2e+02     161     206 ..     138     184 ..     131     198 .. 0.60
   3 ?   -0.8   0.0      0.51   8.3e+02      27      48 ..     262     280 ..     245     310 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0016
                EEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldAi 44
                + a++G+NG+GKs l++ +
  KIR65060.1  6 IHALLGENGAGKSTLMNVL 24
                6799**********99865 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.2
                 EEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEE.E-SSHHHCCC-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
       SMC_N 161 lyllDeidaaLDeknvkkvaellkeksknaQfiv.islreemlekad 206
                 l +lDe  a L  ++++++ +++++ +     iv i+++ + ++   
  KIR65060.1 138 LLILDEPTAVLTPQETEELLTVMRSLKAAGKSIVfITHKLGEVKAIA 184
                 55677777777777777777777766655444432566655555443 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.51
                 EEEEESTTSSHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvL 48 
                   + G  G G + l++Ai   +
  KIR65060.1 262 LGVAGVQGNGQTELIEAI---M 280
                 568999***********9...4 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00025       0.4       3      21 ..       8      26 ..       7      41 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00025
                EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                a++G   +GKStL+n l g
  KIR65060.1  8 ALLGENGAGKSTLMNVLYG 26
                789************9976 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00044      0.72      29      54 ..       7      32 ..       4      40 .. 0.87
   2 ?   -1.4   0.0         1   1.7e+03      25      73 ..     154     206 ..     150     211 .. 0.73
   3 ?   -2.9   0.0         3   4.9e+03      20      35 ..     367     382 ..     363     384 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00044
                HHHHS--SHHHHHHHHHHHHHHS--T CS
        MukB 29 ttlsGgnGaGksttmaafvtaliPdl 54
                 +l G nGaGkst m  ++    Pd 
  KIR65060.1  7 HALLGENGAGKSTLMNVLYGLYQPDE 32
                6899************9999999986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1
                 HHHHHHHHS--SHHHHHHHHHH....HHHHS--TTT----------------- CS
        MukB  25 delvttlsGgnGaGksttmaaf....vtaliPdlsllhfrntteaGatsgsrd 73 
                 +el+t +     aGks + ++     v a+   +++++   t  + + ++srd
  KIR65060.1 154 EELLTVMRSLKAAGKSIVFITHklgeVKAIADRITVIRRGKTVGTASPTASRD 206
                 57888888889999998887642222566666678888888888888888888 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3
                 EEE-HHHHHHHHHS-- CS
        MukB  20 rtfdldelvttlsGgn 35 
                 rt   d  v tlsGgn
  KIR65060.1 367 RTPSADAPVGTLSGGN 382
                 66678999*******9 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00049       0.8       2      40 ..       8      46 ..       8     175 .. 0.77
   2 ?   -0.1   0.0      0.51   8.3e+02       2      29 ..     263     288 ..     262     296 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00049
                EEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE CS
   Dynamin_N  2 avvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql 40
                a++G+  +GKS+++n L g      g++++  +pl+l+ 
  KIR65060.1  8 ALLGENGAGKSTLMNVLYGLYQPDEGEILVDGTPLKLKG 46
                578999*************99666888899999999887 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.51
                 EEEEBTTTTHHHHHHHHHTS--S---SS CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpn 29 
                  v G q +G + +++a++g +  p+ ++
  KIR65060.1 263 GVAGVQGNGQTELIEAIMGLR--PVLAG 288
                 689****************87..55444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0004      0.65      26      50 ..       7      31 ..       3      51 .. 0.86
   2 ?   -0.9   0.0      0.63     1e+03     323     364 ..     135     175 ..     126     176 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0004
      AAA_15 26 tvliGkNnsGKSsilealdlFlnnk 50
                  l G+N++GKS+++++l+ + + +
  KIR65060.1  7 HALLGENGAGKSTLMNVLYGLYQPD 31
                5789**************9887755 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.63
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 + ++l+++EP a L pq  ++l   +++l   +k  +++ TH
  KIR65060.1 135 DVDLLILDEPTAVLTPQETEELLTVMRSLKAAGK-SIVFITH 175
                 56899***********************999998.6666676 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3658.66
//
Query:       KIR65061.1  [L=443]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-43  147.9  37.7    4.7e-43  147.3  32.4    2.1  2  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
      0.048   13.2   0.5       0.18   11.4   0.5    1.9  1  SLC3A2_N      Solute carrier family 3 member 2 N-terminus


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.2    0.0028        25      53      75 ..      60      82 ..      41     123 .. 0.62
   2 !  147.3  32.4   5.2e-47   4.7e-43       2     267 ..     137     415 ..     136     416 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0028
  BPD_transp_2 53 sllllallvallvgaavglllgl 75
                  ++  ++ ++a+l++++vg++l++
    KIR65061.1 60 ANTVTVTVLAVLLAMLVGAVLII 82
                  33333333444444444444333 PP

  == domain 2  score: 147.3 bits;  conditional E-value: 5.2e-47
  BPD_transp_2   2 ilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl....lllallvallvgaavglllgllvlrlkvdeliitllllsv 94 
                   i+++lt++a+l++++l++al f ++G++n+g++g++++G ++aal+  ll+ +    l++a+l++ ++ga++g++ g+l++r++ +e+i t++l++v
    KIR65061.1 137 ISETLTYTAPLVFTGLSVALAF-RGGLFNIGAQGQATIGVILAALAGFLLPLPpvlhLIVAVLAGAAGGALWGFIPGILKARTGAHEVINTIMLNYV 232
                   6789******************.*****************999999999888899*****************************************9 PP

  BPD_transp_2  95 lvgltll.lltgitsgvkgqssvkellgfagallsflsaviv.....llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvi 185
                   +++++ + +++ + + +++ + ++++++++ ++   l+  +      lla+l++ +v +ll+r+ fG+ lravg n++aar +Gi+v r+ +l ++i
    KIR65061.1 233 ALYFLSWiIVQSGVQNPNRADAISRPVDSSAQFPRLLGDNLRvhagiLLAVLATWFVAWLLNRSTFGFELRAVGANPDAARTAGISVPRTYVLMMAI 329
                   999888515677788888888888888888888888777777999**************************************************** PP

  BPD_transp_2 186 sgalAglaGallalllgsipp..nigvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgi...ptelarvllgallilv 267
                   +g+lAgl G  ++l +++  +   +  ++gf++i++++lG +  + g++++al++g++++ +  + g    + el  vl+ +++i++
    KIR65061.1 330 AGLLAGLGGSQMVLGSTANALtpLVIAQIGFDGILVALLGRV-KPWGVLLAALLFGALQAGGNRMQGYagiSLELVTVLQALIVIFI 415
                   **************999999899*******************.*****************766655556668***********9997 PP

>> SLC3A2_N  Solute carrier family 3 member 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5     2e-05      0.18      39      61 ..      65      87 ..      55      91 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2e-05
    SLC3A2_N 39 ilfwlvwlgmLvgaiviivqapk 61
                ++   v l+mLvga++iiv++p 
  KIR65061.1 65 VTVLAVLLAMLVGAVLIIVSDPD 87
                56667889************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.52
# Mc/sec: 2557.89
//
Query:       KIR65062.1  [L=426]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-36  124.6  34.6      4e-36  124.6  34.6    2.2  2  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
      0.081   12.9   2.5       0.27   11.3   2.5    1.9  1  PsbL          PsbL protein
       0.74   10.2   0.0       0.74   10.2   0.0    3.2  4  DUF4212       Domain of unknown function (DUF4212)


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   6.5     0.046   2.8e+02      30      90 ..      31     107 ..      25     123 .. 0.80
   2 !  124.6  34.6   6.6e-40     4e-36       6     267 ..     133     405 ..     128     407 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.046
  BPD_transp_2  30 nlghggfmalGayvaalllalllsl................lllallvallvgaavglllgllvlrlkvdeliitll 90 
                    lg+ + +++Ga ++   + + ls+                l+ ++++a +v++++g+   +l++ l+v  ++++l 
    KIR65062.1  31 ALGVVATVVFGALATDQQARFTLSEtdggaaleidgtigaiLFGVIAAASGVALLAGVPKRWLTTLLGVGIVAFVLS 107
                   57888888888888888777777779999999999988888888888888888888888888888888887777764 PP

  == domain 2  score: 124.6 bits;  conditional E-value: 6.6e-40
  BPD_transp_2   6 ltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvgltlll 102
                     la++l++ Al+  l+  ++Gv+n +++g++++Ga++ al   l +s ++++l++a ++ga++ lll++  +r+ vd++++++ l++++vg+t +l
    KIR65062.1 133 FILALPLIFGALAGVLCE-RSGVVNVAIEGQLLMGAFSGALFGSLSGS-VWVGLVAAAIGGAFISLLLAVFAIRYLVDQVVMGIVLNLLAVGVTGFL 227
                   56899*************.*****************************.**********************************************99 PP

  BPD_transp_2 103 ltgitsgvkgqs.svkellgfagallsflsaviv...........llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisg 187
                   ++ + +  ++   s ++  +++  lls +                +l lllvl++++ l rtr+G++ ravge ++aa+ lG++v rv+   ++++g
    KIR65062.1 228 YERLMQTDAQKYnSAPRFGTWEIPLLSDIPV--LgpalfrsnlflYLGLLLVLVIHIALFRTRWGLRTRAVGEHPTAADTLGVKVLRVRYRNVLLAG 322
                   9988776664432333333334444443333..234777899999**************************************************** PP

  BPD_transp_2 188 alAglaGallalllgsippnigvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgi....ptelarvllgallilv 267
                   ++Ag+ Ga ++l l s   n+  g gf a+aa + G + s+ g++++al +g++++l+++l  i    p+++  +l ++  +l+
    KIR65062.1 323 VVAGIGGASYTLALYSFTKNMIGGKGFIALAALIFGRW-SPTGALLAALFFGFADQLGTYLGAIgsgiPSQFLAMLPYLATMLA 405
                   **************99999*******************.*****************7777776698887777777776665555 PP

>> PsbL  PsbL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.5   4.5e-05      0.27      17      29 ..     270     282 ..     264     287 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.5e-05
        PsbL  17 LYlGLLLvfvlal 29 
                 LYlGLLLv+v+ +
  KIR65062.1 270 LYLGLLLVLVIHI 282
                 9*********976 PP

>> DUF4212  Domain of unknown function (DUF4212)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00012      0.74       2      35 ..      16      49 ..      15      58 .. 0.83
   2 ?   -1.7   0.2      0.65   3.9e+03      50      62 ..      95     107 ..      68     124 .. 0.59
   3 ?   -2.1   0.1      0.85   5.1e+03      28      28 ..     214     214 ..     191     240 .. 0.53
   4 ?   -2.5   0.4       1.2     7e+03      10      64 ..     269     284 ..     263     289 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00012
     DUF4212  2 kaYwrenlrlililLviWfvvsfglgillaeeln 35
                +++w++++++ ++lL+  +v+++++g+l  ++  
  KIR65062.1 16 EGFWTRTRKIGAVLLALGVVATVVFGALATDQQA 49
                689*********************8877666554 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.65
     DUF4212  50 aaqgsilvfvvli 62 
                 +  g  +v+ vl 
  KIR65062.1  95 TLLGVGIVAFVLS 107
                 2222222222222 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.85
     DUF4212  28 i 28 
                 i
  KIR65062.1 214 I 214
                 1 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.2
     DUF4212  10 rlililLviWfvvsfglgillaeelntirtflgfplgFwfaaqgsilvfvvlifv 64 
                  l l                                       g++lv v+ i++
  KIR65062.1 269 FLYL---------------------------------------GLLLVLVIHIAL 284
                 4444.......................................444455554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       955  (0.0532657); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 2775.56
//
Query:       KIR65063.1  [L=300]
Description: hypothetical protein TK50_05990 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2143.61
//
Query:       KIR65064.1  [L=235]
Description: cytidine deaminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-11   44.1   0.1    3.7e-11   42.8   0.1    1.6  2  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    3.3e-09   37.1   0.1    1.6e-07   31.6   0.0    2.2  2  dCMP_cyt_deam_2  Cytidine and deoxycytidylate deaminase zinc-


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.1   4.1e-15   3.7e-11       6      97 ..       8     104 ..       5     108 .. 0.84
   2 ?   -3.4   0.0         1   9.3e+03      51      63 ..     154     166 ..     150     176 .. 0.71

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 4.1e-15
                      HHHHHHHHHHHHHH.TTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHHTSSCETTEEEEE......EE--BHHHHHHHHHH CS
  dCMP_cyt_deam_1   6 kllelalkaakeaq.kcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaaknggsklegatlyv......tlePCsmCakaiiqs 92 
                      +l   a +++++a+ ++s+f+VGa+ + ++ +i++g+n e+a +  +++AE   + +   +gg ++    l +       l PC++C++++ + 
       KIR65064.1   8 RLRAAATEVMRHAYvPYSKFPVGAAALVDDGRIVVGCNVENAAYGVVLCAECGVVSSLHATGGGRI--VALSCvdatgePLMPCGRCRQLLWEQ 99 
                      56678999****************9999999*************************9999954355..333334666999***********998 PP

                      T-SEE CS
  dCMP_cyt_deam_1  93 gikkv 97 
                      g  ++
       KIR65064.1 100 GGPRC 104
                      76655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1
                      TB-HHHHHHHHHH CS
  dCMP_cyt_deam_1  51 tiHAEvnAilkaa 63 
                       +HA ++A ++++
       KIR65064.1 154 FVHADLSAGRQVW 166
                      5788888877765 PP

>> dCMP_cyt_deam_2  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   1.8e-11   1.6e-07      45      93 ..       7      55 ..       1      77 [. 0.89
   2 !    3.5   0.0    0.0086        77       2      18 ..     116     132 ..     115     149 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.8e-11
                     -HHHHHHHHHHTT-B-TTT---EEEEEEETTS-EEEEE-B--TTSTT-B CS
  dCMP_cyt_deam_2 45 delkeaAlaaanasyapyskcpsGvaLvtkdgkvyaGsyiEsaAfNpsL 93
                     ++l++aA + ++++y+pysk p G a  ++dg+++ G  +E+aA+   L
       KIR65064.1  7 ERLRAAATEVMRHAYVPYSKFPVGAAALVDDGRIVVGCNVENAAYGVVL 55
                     56999****************************************8776 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0086
                      HHHSTT--SGGGGTS-S CS
  dCMP_cyt_deam_2   2 sslLPhsFgPkdLlske 18 
                      ++lLPh+F  +dL++ +
       KIR65064.1 116 AELLPHAFDVADLEAVT 132
                      689**********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1719.52
//
Query:       KIR65065.1  [L=426]
Description: pyrimidine-nucleoside phosphorylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-33  116.6   0.9    1.9e-33  116.2   0.9    1.1  1  Glycos_transf_3  Glycosyl transferase family, a/b domain
    3.8e-20   71.3   0.8    4.6e-19   67.9   0.0    2.8  3  PYNP_C           Pyrimidine nucleoside phosphorylase C-termin
      9e-18   63.9   0.2      9e-18   63.9   0.2    2.3  3  Glycos_trans_3N  Glycosyl transferase family, helical bundle 


Domain annotation for each model (and alignments):
>> Glycos_transf_3  Glycosyl transferase family, a/b domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.9   3.1e-37   1.9e-33       3     231 ..      80     287 ..      78     303 .. 0.94

  Alignments for each domain:
  == domain 1  score: 116.2 bits;  conditional E-value: 3.1e-37
                      TBEEEEESS-SSSTHHHHHHHHHHHHHHTT-BEEEEE-STCTTCS-HHHHHCTS.T--ST--HHHHHHHHHHHSEEEEEHHSSSSHHHHHHHHH CS
  Glycos_transf_3   3 dlvDivgTGGdgantfNiStaaaivvAaaGvkvakhgnrsvssksGsaDvLeal.gvnleltpeeveklleevgvgflfapeyhkamkhvapvr 95 
                      ++vD+++TGG+g+++   ++ + ++vAa+G  v++ ++r++++++G++D+Le++ g +  l+++e+ + l+evg +++ a   +++++  +++ 
       KIR65065.1  80 PTVDKHSTGGVGDKI---TLPLTPLVAACGGAVPQLSGRGLGHTGGTLDKLESIpGWRAALSNDEFIRQLREVGAVICAAGAGLAPADRKLYAL 170
                      78************9...**************************************************************************** PP

                      HHHTT.-SSHHHCHHHHHT..SEEEEHHHHHHHHTCHSEEEEEEEESTTSSCCSTSHHHHHHHHHHHHHHHH.TTEEEEEEEEEGSSTSSSEEE CS
  Glycos_transf_3  96 relgirTvfnlLGPLinparvkkqllgvyskelaeklaevlkelgveralvvhgdGldevsllakttvaelk.dgeiteytlepedfglkrael 188
                      r+++  Tv  +  PLi++        +++sk++ae++ +++ +++v++++++++  +d++++la t+v     +g +t + l++++ +l+ a +
       KIR65065.1 171 RDVTG-TVEAI--PLIAS--------SIMSKKIAEGTGALVLDVKVGSGAFMKS--VDDARELARTMVELGGaHGVRTVALLTDMSTPLGLAVG 251
                      *****.*****..*****........****************************..************999889******************** PP

                      SHHHHSSHHHHHHHHTTHHTSCHHHHHHHHHHHHHHHHHHHTT CS
  Glycos_transf_3 189 ealeggepkenaeilkavlegkksaakrdlvllnagaalvlag 231
                      +a+e+   +e++e+l +   g+ +   ++l+l++a ++l +ag
       KIR65065.1 252 NAVEV---TESVEVLAGG--GPADV--VELTLALAREMLDAAG 287
                      *****...9999998876..66665..6888888888887776 PP

>> PYNP_C  Pyrimidine nucleoside phosphorylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.11   6.8e+02       8      20 ..     147     159 ..     144     166 .. 0.89
   2 ?   -1.3   0.0      0.29   1.7e+03       6      19 ..     216     229 ..     213     231 .. 0.92
   3 !   67.9   0.0   7.6e-23   4.6e-19       1      75 []     337     411 ..     337     411 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.11
                 HHHHHHHHHTTTS CS
      PYNP_C   8 reiGlaaveLGAG 20 
                 re+G +++++GAG
  KIR65065.1 147 REVGAVICAAGAG 159
                 799*********9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.29
                 -HHHHHHHHHHTTT CS
      PYNP_C   6 dareiGlaaveLGA 19 
                 dare+++ +veLG+
  KIR65065.1 216 DARELARTMVELGG 229
                 799**********8 PP

  == domain 3  score: 67.9 bits;  conditional E-value: 7.6e-23
                 EEEEE-HHHHHHHHHHTTTSBSSTTS---TT-EEEES--TT-EEBTTSEEEEEEESSSCHHHHHHHHHHHHEEEE CS
      PYNP_C   1 yvseidareiGlaaveLGAGRakkeDpidlavGielhkklGdkVkkGeplatiYankeekleeavkklkkaikis 75 
                 +v ++da +iG+aa++LGAGRa+keDp+    G++lhk++Gd V +Gepl+ + a+  +++++a++++  a++is
  KIR65065.1 337 FVASVDAYAIGVAAWRLGAGRARKEDPVSVPSGVVLHKRPGDPVRAGEPLYELRAEHAARIPAALAEAARAVRIS 411
                 699******************************************************************999986 PP

>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.2   1.5e-21     9e-18       2      63 .]       8      69 ..       7      69 .. 0.98
   2 ?   -2.6   0.2      0.87   5.2e+03      51      62 ..     274     285 ..     272     286 .. 0.79
   3 ?   -2.9   0.2       1.1   6.5e+03      50      60 ..     399     409 ..     396     410 .. 0.71

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 1.5e-21
                     HHHHHHHTT.---HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHS CS
  Glycos_trans_3N  2 diikklrdgeeLtaeeirfaihgilkgevtdaqiaAfLmAlrlkGetaeEiaalaeAmresg 63
                     d+i+ +rdg+ L +++i +++++++kg v d q++A++mA+ l+G+ta Eia ++ Am++sg
       KIR65065.1  8 DVIRAKRDGGVLGDAQIDWVVDAYTKGLVADEQMSALAMAILLRGMTAPEIARWTAAMIASG 69
                     89*********************************************************997 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.87
                      HHHHHHHHHHHH CS
  Glycos_trans_3N  51 EiaalaeAmres 62 
                       + ala+ m+++
       KIR65065.1 274 LTLALAREMLDA 285
                      57899**99986 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.1
                      HHHHHHHHHHH CS
  Glycos_trans_3N  50 eEiaalaeAmr 60 
                      + +a++a+A+r
       KIR65065.1 399 AALAEAARAVR 409
                      45777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2900.24
//
Query:       KIR65066.1  [L=226]
Description: hypothetical protein TK50_06005 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-43  146.7   0.0    6.1e-43  146.5   0.0    1.0  1  DUF4272   Domain of unknown function (DUF4272)


Domain annotation for each model (and alignments):
>> DUF4272  Domain of unknown function (DUF4272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.5   0.0   3.4e-47   6.1e-43       5     206 ..      15     221 ..      12     222 .. 0.93

  Alignments for each domain:
  == domain 1  score: 146.5 bits;  conditional E-value: 3.4e-47
     DUF4272   5 seeeLkrkgik.vpeslppveseeev.elrtaeeiakRaiaLlvvaavaeallegepvdfaeellesrnaldaltpkEkefledaepdeqeviqlswry 101
                 s +eL+r+g++ +pe++p+v+++ +  elr++ ei +R+++L+v+ a+++    g+p ++a+++l ++++ d +tp E++f+ +   +++++++++ ++
  KIR65066.1  15 SLDELSRLGLPlPPEQFPLVWEPGDEiELRPTVEIEARIAVLHVILARCF----GMPAQAAMSWLLNSHLVDMVTPPEWQFVMG---GRGDHRSFVLHH 106
                 5599*******99*********97666***********************....******************************...88********** PP

     DUF4272 102 ealevLaWAlGlveeldvpdeicdleelvrllr....esdsleefaeaaklRsleEIldaldliyrldwacvearlkgepapggldssvvleRhrALnW 196
                 +al++LaW+lGl+++ld p+ ++d + + rl+     e++ +++ +  a+++++++++  ldl+y+ldwa+ e + +g++ pg +d++++ +R++AL+W
  KIR65066.1 107 DALFSLAWVLGLTKQLD-PTLPVDERLVERLPHiaggETFAHWRSRILAAPQHPADVAALLDLHYCLDWAYLELERDGRSRPGLVDANAIGQRRWALEW 204
                 *****************.********************************************************************************* PP

     DUF4272 197 ltg.....edad..WDd 206
                 +++     +d++  W++
  KIR65066.1 205 AVVlrgpyHDEPpgWEE 221
                 **965544332255665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1583.58
//
Query:       KIR65067.1  [L=359]
Description: adenosine deaminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.4e-88  294.8   0.0      1e-87  294.6   0.0    1.1  1  A_deaminase  Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.6   0.0   5.6e-92     1e-87       2     328 .]      12     348 ..      11     348 .. 0.93

  Alignments for each domain:
  == domain 1  score: 294.6 bits;  conditional E-value: 5.6e-92
                  S-EEEEEEECCCSS-HHHHHHHHHHHCHT..SS-SCCCCCCCCHCHCCHHHHCCHCCCHHCCCHHHTCCCCCCHHHHHHCCCCCHCTTCCCCCCCCSH CS
  A_deaminase   2 lpKvdlHvHldgclnpktllrlakkkgikeldekvveedeklltlqekfesLkeflydlsvdvlvlhwlievvrllavekakdlakdfvkylevifsP 99 
                  +pK+ lH+Hldg+l+p+t+ +la++ g + l+ ++  ++++++++++++ sL+++l+ + ++v+v++ +  ++r++a e+a+dla+d+v+y+ev+f+P
   KIR65067.1  12 APKALLHDHLDGGLRPATIVELAAEVGHE-LPTTDPGALGRWFVEAADSGSLERYLETFAHTVAVMQ-TAPALRRVARECAQDLAADGVVYAEVRFAP 107
                  7**************************66.*************************************.****************************** PP

                  HHHHHH-GCSTCCHHHHCCCCCCCCCCH...CCT-EEEEEECCETT.TCCGHCCCHHHHHHCCCCCCCCCCCCC-TTSTTGGGHHHHHCCCCHTT-EE CS
  A_deaminase 100 lfeatagpqlpelevvlkvvdgfdsved...eskvkerlilvksrk.peewseeinelasyyrdytvvnldllndekiepaslflklraeagkstlll 193
                  + + +++  l+ +evv++vv gf+++ +   + +++ r+ +    + +++ s+ei+ela+++rd +vv++d++++e+++p++++l+++++   +++++
   KIR65067.1 108 EQHLERD--LTLDEVVEAVVAGFAEGTAlaaDAGHQIRVGTLLTAMrHAARSQEIAELAVRHRDAGVVGFDIAGAEAGFPPTRHLDAFEYLQRENFHF 203
                  *******..****************9752226666777666666669*************************************************** PP

                  EEEESSSS-CHHHHHHHHCS--SCECE-GGGGGSHH..........HHHHHHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-EEEE--BSCCC CS
  A_deaminase 194 tpHaGEagglehvveAllllkaerigHGvrlrkdpv..........LqyllalaqiplevcPlSNvalgafleyaenPlkeflerglnvslntDDPlq 281
                  t+HaGEa+gl+++++A+  ++a+r+gHGvr+++d++          L +  ++++iple+cP+SNv++ga +++ae+P+  + + +++v++ntD++l+
   KIR65067.1 204 TIHAGEAFGLPSIWQAIQWCGADRLGHGVRIVDDITpgddrptlgrLAAYVRDKRIPLELCPSSNVQTGAAASIAEHPIGLLRDLRFRVTVNTDNRLM 301
                  *********************************975333333333366777777******************************************** PP

                  CT-SHHHHHHHHHHHHT--HHHHHHHHHHHHHCSSS-HHHHHHHCHC CS
  A_deaminase 282 fgttLieeYaiaaqvfklseedlaelarNsvkqsflsadekkklldk 328
                  +gt+++ e+a ++++f++++++l+ +++N++k++f+++de+  ++d+
   KIR65067.1 302 SGTSMSREMALLVEAFGYGWKELQWFTINAMKSAFIPFDERLVIIDE 348
                  *****************************************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2668.67
//
Query:       KIR65068.1  [L=201]
Description: ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-05   23.4   0.0     0.0027   17.5   0.0    2.2  1  PRK           Phosphoribulokinase / Uridine kinase family
  ------ inclusion threshold ------
      0.015   15.6   0.0       0.11   12.8   0.0    2.0  2  AAA_22        AAA domain
       0.04   13.6   0.0      0.056   13.2   0.0    1.2  1  AAA_24        AAA domain
      0.045   13.5   0.0      0.078   12.7   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
      0.048   13.8   0.0       0.15   12.2   0.0    1.8  2  AAA_33        AAA domain
      0.085   12.8   0.1        1.3    8.9   0.0    2.2  2  NACHT         NACHT domain
       0.12   12.7   3.6       0.76   10.1   3.6    2.3  1  AAA_16        AAA ATPase domain
       0.13   11.6   0.0       0.21   11.0   0.0    1.2  1  PhoH          PhoH-like protein
       0.14   11.5   0.0       0.23   10.8   0.0    1.2  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.23   10.7   0.5       0.49    9.7   0.0    1.7  2  Zeta_toxin    Zeta toxin


Domain annotation for each model (and alignments):
>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.5e-06    0.0027      38     121 ..      29     111 ..       7     150 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.5e-06
         PRK  38 flrldraekdleleerkrakekevsflspeandfdllyevlkelkegkkvdkpiYsheteeaapdkeeliegadvlviEGlhal 121
                 +l ld ++kd        +++  v+++sp+  d +   e++ +l+  +k ++p+Y    + +++ ++  + g+ + v EG++a+
  KIR65068.1  29 VLCLDDFYKDGDD-PTLPRHDGLVDWDSPRSWDAGAAVETIARLARDGKAEVPVYAIGADRQVATRPFEVTGSPLFVAEGIFAA 111
                 4556666666543.3334566789****************************************899999************97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.9e-05      0.11       4      24 ..       4      24 ..       1      28 [. 0.89
   2 ?    0.5   0.0      0.38   6.8e+02      54      70 ..     135     151 ..     110     197 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.9e-05
      AAA_22  4 tagilvvtGesGtGKTtllrr 24
                 ++++++ G+sG+GK++ ++r
  KIR65068.1  4 PRRVILLAGPSGSGKSYIAQR 24
                6899*************9997 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.38
      AAA_22  54 kdllrellralglelka 70 
                 +++lr+l+r+l +++ka
  KIR65068.1 135 TTFLRRLARDLAEQRKA 151
                 45555555555555555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.1e-05     0.056       4      30 ..       7      33 ..       5      64 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.1e-05
      AAA_24  4 kiliyGpsgiGKTtlakelgpkplfid 30
                 il+ Gpsg+GK+++a + g  +l++d
  KIR65068.1  7 VILLAGPSGSGKSYIAQRTGLPVLCLD 33
                799***************966666665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.4e-05     0.078      22      37 ..       5      20 ..       1      22 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.4e-05
      AAA_29 22 kgatlltGpsGsGKST 37
                + ++ll+GpsGsGKS 
  KIR65068.1  5 RRVILLAGPSGSGKSY 20
                4579***********5 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.4e-05      0.15       1      18 [.       7      24 ..       7      38 .. 0.90
   2 ?   -1.8   0.0       1.8   3.2e+03      13      24 ..     135     146 ..     127     176 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.4e-05
      AAA_33  1 lvllvGlpGsGKstlaer 18
                ++ll G++GsGKs+ a+r
  KIR65068.1  7 VILLAGPSGSGKSYIAQR 24
                799************998 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.8
      AAA_33  13 stlaerllkklg 24 
                 +t+++rl++ l+
  KIR65068.1 135 TTFLRRLARDLA 146
                 555555555443 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00071       1.3       1      19 [.       6      24 ..       6      26 .. 0.93
   2 ?    1.4   0.0      0.14   2.6e+02      14      28 ..     135     149 ..     134     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00071
                SCEEEEC-TTTCHHHHHHH CS
       NACHT  1 rlvilqGeaGsGKTtLlqk 19
                r+++l G++GsGK++ +q+
  KIR65068.1  6 RVILLAGPSGSGKSYIAQR 24
                799************9996 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHCTS- CS
       NACHT  14 TtLlqklalawaegk 28 
                 Tt+l++la+++ae++
  KIR65068.1 135 TTFLRRLARDLAEQR 149
                 99*********9987 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.6   0.00042      0.76      25      43 ..       6      24 ..       1     200 [. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00042
      AAA_16 25 elvllsGesGvGKsslvre 43
                +++ll G+sG+GKs ++++
  KIR65068.1  6 RVILLAGPSGSGKSYIAQR 24
                899***********99965 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.21      20      44 ..       6      30 ..       2      37 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
                SEEEEE--TTSSTTHHHHHHHHHHH CS
        PhoH 20 divfaiGpaGtGKtylavalaveal 44
                 ++  +Gp+G+GK+y+a  +++ +l
  KIR65068.1  6 RVILLAGPSGSGKSYIAQRTGLPVL 30
                578899***********99998765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013      0.23      25      42 ..       8      25 ..       4      33 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
  Mg_chelatase 25 lllvGppGsGKtmlakrl 42
                  +ll+Gp+GsGK+ +a+r 
    KIR65068.1  8 ILLAGPSGSGKSYIAQRT 25
                  89**************94 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00027      0.49      18      34 ..       7      23 ..       2      26 .. 0.87
   2 ?   -2.3   0.2       1.2   2.2e+03     112     154 ..     112     151 ..     109     158 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00027
  Zeta_toxin 18 lillgGqpGAGKselae 34
                +ill+G +G+GKs++a+
  KIR65068.1  7 VILLAGPSGSGKSYIAQ 23
                79************997 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
  Zeta_toxin 112 klaealkkaGYevevvvvavkkelSrlgvldRyeeevaegRlv 154
                 +++e+ + +G    ++++  ++ ++ l+ l+R ++e    R++
  KIR65068.1 112 EIVEECRRQGLLAGAYALRRPRGTTFLRRLARDLAE---QRKA 151
                 567777788888888888888888888888888887...2332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1491.05
//
Query:       KIR65069.1  [L=1185]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-37  129.6  11.8    2.4e-37  129.6  11.8    2.7  2  NIT           Nitrate and nitrite sensing
    2.9e-10   40.6   0.0    5.4e-10   39.8   0.0    1.4  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    8.4e-09   35.7   0.0    6.9e-08   32.7   0.0    2.7  1  HAMP          HAMP domain
     0.0025   17.2   1.3     0.0025   17.2   1.3    1.8  2  DUF4407       Domain of unknown function (DUF4407)
  ------ inclusion threshold ------
      0.026   14.5   4.0       0.21   11.6   4.0    2.1  1  Keratin_B2_2  Keratin, high sulfur B2 protein
       0.12   12.3   0.5       0.85    9.6   0.0    2.4  2  KorB_C        KorB C-terminal beta-barrel domain


Domain annotation for each model (and alignments):
>> NIT  Nitrate and nitrite sensing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.6  11.8   8.2e-41   2.4e-37       1     229 [.      75     318 ..      75     319 .. 0.86
   2 ?   -4.6   5.8         6   1.8e+04      56      70 ..     417     433 ..     345     528 .. 0.57

  Alignments for each domain:
  == domain 1  score: 129.6 bits;  conditional E-value: 8.2e-41
         NIT   1 dLvhaLQkERglsagylasgg..ge.rkaaelaaqraatDaalaalr......a.l.aglarrldallraldqLpalRrqvdtrkldakeavaaYtdvi 88 
                 dLv++LQ+ER+ +++ l+++g  ++ +  +++++   ++D+a a ++      + l ++l++ ld+++++l++Lp  R+qv ++kl++ +a++aY  +i
  KIR65069.1  75 DLVNSLQDERTSAVLLLGANGdqAKaQYQEAYNRVNSRVDQAKAPYLsqrakvEdLpNSLENLLDGIDQNLKDLPGTRSQVFNGKLKIIDAMQAYEGLI 173
                 79*****************98432222233355555555555555559999996699999*********************889*************** PP

         NIT  89 aaLldladelaqgspdrelarqlralaalsrakEalsqerallaaalaagrfsaalyaaflslvarqqaalaefraaatpaqralydetvtgpavkaae 187
                 ++Ll+ +d+++q ++d +l++++ra aa++r kE+ls  r +++ al + ++++ l++++++  + qq+al++f+a+a++a+++l d+tv+g ++++a+
  KIR65069.1 174 NDLLSIRDSATQLAGDNDLSDRMRAAAAVAREKEYLSVRRVVVHRALIQRELTPILRTDYIASGTGQQQALQSFKAVASQAEADLHDQTVAGGDRREAQ 272
                 ************************************************9999**************************************999****** PP

         NIT 188 tlrdrl..astggvdaed.e...eeWfaastaridqlravesrladdl 229
                 +++  l  +++g  + +d +   ++W+aa+ a + ++r+ve +l +d+
  KIR65069.1 273 NYTGWLdgNING--SMADaPfgpDQWDAAMVANAKLIRTVEAKLDGDV 318
                 **8554322222..22223234677*******************9997 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 6
         NIT  56 llrald..qLpalRrqv 70 
                 + +a++  +L+a+R+++
  KIR65069.1 417 VTEAFNavHLEAVRTAA 433
                 22222222333333333 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   1.8e-13   5.4e-10       5     110 ..     550     654 ..     547     656 .. 0.89

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 1.8e-13
                 HHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEE CS
   HATPase_c   5 rLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGtt 103
                  L +++ +l dNa  f+++++++ ve ++  d+ ++ veD GiGi++e+l++l e++ +   + +    + +Gl +v +l++++g +++++   +rGt 
  KIR65069.1 550 DLVHLVAELFDNATAFSPPDSQVMVEARRVGDRASLYVEDRGIGISVEQLHELNERLAT-PPQVDVAVSRMMGLVVVARLASRHGVKVELRPGNDRGTV 647
                 799*************9999999999996559*******************9***9999.555555667778*******9999*******9999***** PP

                 EEEEEES CS
   HATPase_c 104 ftftlpl 110
                   +tlp 
  KIR65069.1 648 ADVTLPT 654
                 9999986 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   2.3e-11   6.9e-08       1      49 [.     353     426 ..     353     430 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 2.3e-11
                 HHHHTTHHHHHHHHHHHHHHTT.T........................BTSSTCCTTSSSHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaa.G........................dldtrlpvsgrDEiGeLarafNaMld 49 
                 l+ar++ r+Lr L++ a +ia+ G                        ++ ++lpv+++DE+G++ +afNa + 
  KIR65069.1 353 LVARSMARSLRDLRQGALNIAQyGlpqavarlrdpqlssqlspvqaanQIAEPLPVRSKDEFGQVTEAFNAVHL 426
                 69********************98999***99999888888888888888888*****************9875 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.3   8.5e-07    0.0025     144     280 ..      90     229 ..      52     230 .. 0.85
   2 ?   -3.1   0.2       1.3     4e+03      78      97 ..     337     356 ..     327     358 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.5e-07
     DUF4407 144 alqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld....atarlaalraelaeleaerakeraasqaaaa 238
                  l a+ d+a+a+++++++ +++ +d++k    +++a  ++   + ++ ld ++++l++l ++++     + ++ ++ + +++l +++ ++r++ ++  a
  KIR65069.1  90 LLGANGDQAKAQYQEAYNRVNSRVDQAKAPYLSQRAKVEDLPNSLENLLDGIDQNLKDLPGTRSqvfnGKLKIIDAMQAYEGLINDLLSIRDSATQ-LA 187
                 5667788999999999999999999999777777888888888899999999999999999988999878899999999*****999998886665.** PP

     DUF4407 239 addGllarlealdrltkedatallarlllfllflaiellPvl 280
                 +d++l +r++a  ++++e+  + + r++++ +++  el+P+l
  KIR65069.1 188 GDNDLSDRMRAAAAVAREKEYLSVRRVVVHRALIQRELTPIL 229
                 ******************************999999999997 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
     DUF4407  78 lalalpRlllAvligvvise 97 
                  +l+l+ lllA+l++ ++++
  KIR65069.1 337 TGLLLGMLLLAILFAYLVAR 356
                 56667778999999999986 PP

>> Keratin_B2_2  Keratin, high sulfur B2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.0   7.1e-05      0.21       6      37 ..     836     867 ..     822     899 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.1e-05
  Keratin_B2_2   6 CcqpscCqssCcrpscCqpscCqpsccrPvcc 37 
                   + qp+++ +++ +p++  p+++qp++ +Pv+ 
    KIR65069.1 836 SGQPVSAAPVSGQPVSAAPVSGQPVSAQPVSG 867
                   33344444444444444444444444444433 PP

>> KorB_C  KorB C-terminal beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.43   1.3e+03       8      32 ..     610     634 ..     608     652 .. 0.85
   2 ?    9.6   0.0   0.00028      0.85      19      52 ..    1062    1095 ..    1056    1100 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.43
      KorB_C   8 pivqVehDrrearlllnrrpsseGl 32 
                 p v V + r  + ++++r +s +G+
  KIR65069.1 610 PQVDVAVSRMMGLVVVARLASRHGV 634
                 5688999999***********9996 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00028
      KorB_C   19 arlllnrrpsseGlawvkydDdGrefeldladVk 52  
                  a   ++rrp+s+G aw    DdG  ++  + +V 
  KIR65069.1 1062 ADAFTGRRPTSQGNAWQTAADDGWRAASAATEVP 1095
                  566799*****************88887777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.24s 00:00:01.04 Elapsed: 00:00:00.42
# Mc/sec: 8537.92
//
Query:       KIR65070.1  [L=134]
Description: dynein regulation protein LC7 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-22   79.5   0.2    1.7e-22   79.0   0.2    1.3  1  Robl_LC7  Roadblock/LC7 domain
  ------ inclusion threshold ------
      0.017   15.4   0.0      0.026   14.8   0.0    1.4  1  DUF2173   Uncharacterized conserved protein (DUF2173)


Domain annotation for each model (and alignments):
>> Robl_LC7  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.2   1.9e-26   1.7e-22       2      91 .]       8      98 ..       7      98 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 1.9e-26
                HHHHHHHCCHHCTECEEEEEETTS-EEEE.CCSSSS-HHHHHHHHHHHHHHHHHHHHHCTSSSECEEEEEETTEEEEEEECTTTEEEEEEE CS
    Robl_LC7  2 veelleelqsvpgvrgalvvskdGlviat.stldnddadqlAalasgllsaakaaarelgegelkelliegkkgelyltpagegalLvvla 91
                 ++l +  ++vpgv +a+ vs+dGl++a+  +l++d+adqlAa+asgl+s++++aar +++g + ++++e+++g l+l++  +g+ ++vla
  KIR65070.1  8 GWLLANFADRVPGVAHAVAVSADGLLLASsRDLPRDRADQLAAIASGLVSLTQGAARCFEGGAVLQTVVEMDNGFLFLMSISDGSSFAVLA 98
                58999999******************************************************************************99986 PP

>> DUF2173  Uncharacterized conserved protein (DUF2173)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.9e-06     0.026       8      58 ..      18      68 ..      16     107 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.9e-06
     DUF2173  8 lpGvvAagefsddGelveykGeldeeeaemlakmcaantrmvkmqadglea 58
                +pGv  a+  s+dG l+++  +l+ + a+ la+++     ++++ a+ +e 
  KIR65070.1 18 VPGVAHAVAVSADGLLLASSRDLPRDRADQLAAIASGLVSLTQGAARCFEG 68
                89*******************************************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       193  (0.0107647); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 923.47
//
Query:       KIR65071.1  [L=197]
Description: ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-30  106.3   1.4    7.6e-29  101.2   1.4    2.6  1  ATP_bind_1   Conserved hypothetical ATP binding protein
    0.00033   20.6   0.8      0.018   15.0   1.3    2.1  2  RsgA_GTPase  RsgA GTPase
     0.0011   18.5   0.0     0.0017   17.9   0.0    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
     0.0046   16.6   0.4      0.041   13.5   0.4    2.3  2  Ras          Ras family
  ------ inclusion threshold ------
      0.016   15.5   0.2       0.08   13.2   0.2    2.0  1  Roc          Ras of Complex, Roc, domain of DAPkinase
      0.028   14.2   0.2      0.064   13.0   0.3    1.6  2  AAA_24       AAA domain
      0.035   13.6   0.1        1.7    8.2   0.0    2.1  2  FeoB_N       Ferrous iron transport protein B
      0.091   12.4   0.0      0.091   12.4   0.0    1.2  1  ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-bindi
       0.13   12.3   0.2       0.19   11.8   0.2    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
       0.17   11.8   1.5       0.29   11.1   1.5    1.4  1  NTPase_1     NTPase
       0.21   10.6   1.0        0.3   10.1   1.0    1.2  1  T2SSE        Type II/IV secretion system protein
        1.8    8.8   5.5       0.54   10.5   1.3    2.1  2  AAA_28       AAA domain


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   1.4   5.1e-32   7.6e-29       1     239 [.      19     186 ..      19     188 .. 0.96

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 5.1e-32
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDPAaeelpYeaavdirelitledvmed..lglgpngalvvaleflresldwldeelekeeddyllfD 97 
                 ++G++G+GKtt+vg++sei++l+                       ++ ++t + v +d   ++  +++++va++f+r+s+   d++l      ++lf+
  KIR65071.1  19 IAGGFGVGKTTLVGSVSEITPLT-----------------------TEAIMTSAGVGVDdtRQVPGKTTTTVAMDFGRISI---DRDL-----ILYLFG 86 
                 79*********************.......................*************999*******************...7888.....8***** PP

  ATP_bind_1  98 tPGQielfthseslakiveeLesefalvvvyLvDsqrltd...ptkfisgllsalsamlrlelPhvvvlnkfDllkeklekeleffedvealsllleke 193
                 tPGQ ++++++++l+        ++a+++v+LvD++rl+d   +++f+++           +lP++v++n+fD+++                       
  KIR65071.1  87 TPGQTRFWFMWDELV--------RGAIGAVVLVDTRRLADcfaAIDFFEH----------RRLPYLVAINCFDGMQ----------------------- 144
                 ***************........***************************..........**************88....................... PP

  ATP_bind_1 194 eekykklaeaiaelleefalvlrflplssekeesiedllslideal 239
                      + +++++++l    +v+++ ++++++e++ ++l+sl+++ l
  KIR65071.1 145 ----YHDPQDVRDALAISHEVPVVACDARNRESTKHVLISLVEYVL 186
                 ....35789*********************************9876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.3   1.2e-05     0.018     100     144 ..      15      59 ..      10      70 .. 0.91
   2 ?    2.9   0.0     0.061        91      41      97 ..     125     181 ..     112     188 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
                  SEEEEECSTTSSHHHHHHHHCTT-----S--------------SE CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtav 144
                    +v++G  GvGK+tL+ ++ + + l t+++ ++ g G   T++v
   KIR65071.1  15 AKIVIAGGFGVGKTTLVGSVSEITPLTTEAIMTSAGVGVDDTRQV 59 
                  56899*********************************9999986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.061
                  HHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  41 laeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkell 97 
                  ++e+++++ ++++n  D ++ ++  +   +   + +++v++++a+++e+++++   l
   KIR65071.1 125 FFEHRRLPYLVAINCFDGMQYHDPQDVRDALAISHEVPVVACDARNRESTKHVLISL 181
                  678999999*********9999966666667778899********999999876655 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.2e-06    0.0017       5     146 ..      16     155 ..      13     187 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.2e-06
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEET..TCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEE CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaislek..etkkylinliDtPGHvdFskevirglrvlDgavlvv 101
                 +i+i+g    GKtTL++++ + t  ++++ ++  +   +   ++ +  g T ++ a+ + +    ++  + l  tPG   F     + +r + gav++v
  KIR65071.1  16 KIVIAGGFGVGKTTLVGSVSEITPLTTEAIMTSAG---VGVDDTRQVPGKTTTTVAMDFGRisIDRDLILYLFGTPGQTRFWFMWDELVRGAIGAVVLV 111
                 6899****************999998887766643...44444455555555555555553224477788899************************** PP

                 ETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST.HHHHHHHHHHH CS
    GTP_EFTU 102 daveGvepqteevlrlalkegvpiivfiNKmDrl.kaelkeiveev 146
                 d +    +     +     +++p  v+iN  D +  ++ + + +++
  KIR65071.1 112 DTR--RLADCFAAIDFFEHRRLPYLVAINCFDGMqYHDPQDVRDAL 155
                 *99..57778889999999999999999999998656666555544 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.4   2.8e-05     0.041       1      81 [.      16     113 ..      16     129 .. 0.81
   2 ?   -0.9   0.0      0.73   1.1e+03     129     160 ..     154     185 ..     133     187 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.8e-05
                 EEEEEESTTSSHHHHHHHHHHSS.CSSSCTTT...SSEE.......EEEEEEEET......TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEET CS
         Ras   1 KlvlvGdsavGKtslllrfvkdk.FkeeyesT...igvd.......fytkeievd......gkevkleiwDTAGqeefkslrelyyrdaegillvydi 81 
                 K+v+ G  +vGKt+l+ +  + +  ++e ++T   +gvd       ++t+++ +d      ++++ l ++ T Gq +f  + +  +r+a g++++ d 
  KIR65071.1  16 KIVIAGGFGVGKTTLVGSVSEITpLTTEAIMTsagVGVDdtrqvpgKTTTTVAMDfgrisiDRDLILYLFGTPGQTRFWFMWDELVRGAIGAVVLVDT 113
                 89**************9887754256666666444788877777666666777779999999999************************999998765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.73
                 HHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 129 elakelglkfletSAktnenveeafeellrei 160
                 +la +++++ + + A+++e  ++++ +l++ +
  KIR65071.1 154 ALAISHEVPVVACDARNRESTKHVLISLVEYV 185
                 56778888899999999999999998888765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   5.3e-05      0.08       1      91 [.      16     115 ..      16     129 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.3e-05
                 EEEEESSTTSSHHHHHHCHCT-CCC-E....EETTTTEEEEE....EECGGSG.GCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsek....ekstigvdflt....kevtkik.gvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsr 90 
                 K+v+ G  gvGKt+l+ ++ e +  ++    +++ +gvd ++    k++t++   +   +  +++ l ++ t Gq+rf  + +  +r+a  a++++d+r
  KIR65071.1  16 KIVIAGGFGVGKTTLVGSVSEITPLTTeaimTSAGVGVDDTRqvpgKTTTTVAmDFGRISIDRDLILYLFGTPGQTRFWFMWDELVRGAIGAVVLVDTR 114
                 9***************99988655433011123334444322222222222221111112234577888889999999888888888888888888876 PP

                 H CS
         Roc  91 s 91 
                 +
  KIR65071.1 115 R 115
                 5 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   4.3e-05     0.064       2      33 ..      14      44 ..      13      77 .. 0.75
   2 ?   -2.3   0.0       2.1   3.1e+03      28      62 ..     136     170 ..     129     191 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.3e-05
      AAA_24  2 klkiliyGpsgiGKTtlakelgpkplfidtek 33
                ++ki+i G  g+GKTtl+ +   ++  + te+
  KIR65071.1 14 SAKIVIAGGFGVGKTTLVGSV-SEITPLTTEA 44
                68***************9988.6665555555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.1
      AAA_24  28 fidtekGlksldadkfpdieswedfldevvelaae 62 
                  i++++G++  d+ ++ d+ ++   +  v+ +a++
  KIR65071.1 136 AINCFDGMQYHDPQDVRDALAISHEVPVVACDARN 170
                 56666666666555555444333333333333333 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.028        41       2      23 ..      16      37 ..      15      71 .. 0.73
   2 ?    8.2   0.0    0.0011       1.7      83     152 ..     108     177 ..      98     181 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.028
                EEEEEESTTSSHHHHHHHHHTT CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltga 23
                +++++G   vGkttl+ ++++ 
  KIR65071.1 16 KIVIAGGFGVGKTTLVGSVSEI 37
                7899***********9887764 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0011
                 EEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHH CS
      FeoB_N  83 vnvvdatnlernLyLtlqllelgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieel 152
                 v +vd+ +l   +  +      ++p ++a+n +d ++ +  +   ++L+ + +vpvv++ a+++e ++++
  KIR65071.1 108 VVLVDTRRLADCFAAIDFFEHRRLPYLVAINCFDGMQYHDPQDVRDALAISHEVPVVACDARNRESTKHV 177
                 5566777777665544444445689***************999999*****************9999887 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.1e-05     0.091      14      51 ..      14      51 ..       9     192 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.1e-05
                 T-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEEESE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 14 GqrtlipgafgvGktvisqslskqsnsddaiiyvgiGe 51
                   +++i g+fgvGkt+++ s+s+ +  ++  i+   G 
   KIR65071.1 14 SAKIVIAGGFGVGKTTLVGSVSEITPLTTEAIMTSAGV 51
                 57899*************99999876665444444443 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00013      0.19       1      55 [.      16      89 ..      16     164 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
                EEEEEESTTSSHHHHHHHHHT..................STEEESSSTTSSSSEEEEEEEETT.EEEEEEECGG CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltg..................ekaivsdkpgtTrdinegrvklkg.keielvDtpG 55
                +++i+G   vGK+tL+ + ++                  ++ +v  k  tT  + +gr+++++   ++l  tpG
  KIR65071.1 16 KIVIAGGFGVGKTTLVGSVSEitpltteaimtsagvgvdDTRQVPGKTTTTVAMDFGRISIDRdLILYLFGTPG 89
                689***************99666666666666655433234555555556666677777776645678888888 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.5   0.00019      0.29       1      22 [.      16      37 ..      16      66 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00019
                EEEEE--TTSSHHHHHHHHHHH CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvlel 22
                k++i G  GvGKtTlv  v+e 
  KIR65071.1 16 KIVIAGGFGVGKTTLVGSVSEI 37
                699*************999875 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.0    0.0002       0.3     130     162 ..      15      47 ..      11      78 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0002
       T2SSE 130 glilvsGgTgsGKttllyallkeinksderivt 162
                   i+++Gg g GKttl+ ++ ++ + ++e i+t
  KIR65071.1  15 AKIVIAGGFGVGKTTLVGSVSEITPLTTEAIMT 47 
                 579***************999999999999988 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.3   0.00036      0.54       1      21 [.      16      36 ..      16      54 .. 0.86
   2 ?   -0.3   0.0      0.77   1.1e+03      74     106 ..     107     140 ..      95     177 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00036
      AAA_28  1 kivitGgestGKTtlleaLaa 21
                kivi Gg + GKTtl+   ++
  KIR65071.1 16 KIVIAGGFGVGKTTLVGSVSE 36
                79*************987765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.77
      AAA_28  74 kvlfcDrg.lldtlaYarayggeaeaeleaaare 106
                  v+++D+  l d +a +++++ ++ ++l+a+ ++
  KIR65071.1 107 AVVLVDTRrLADCFAAIDFFEHRRLPYLVAINCF 140
                 6778886515566666688888888888876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1390.13
//
Query:       KIR65072.1  [L=840]
Description: transposase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 6066.42
//
Query:       KIR65073.1  [L=337]
Description: primase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.55    9.1   4.4       0.86    8.5   4.4    1.3  1  DUF2722   Protein of unknown function (DUF2722)


Domain annotation for each model (and alignments):
>> DUF2722  Protein of unknown function (DUF2722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.4   4.8e-05      0.86     389     465 ..     125     198 ..     104     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 4.8e-05
     DUF2722 389 asqekeddddddddekerkkeeekdkekdsikadddkdlsmdssineegetevddanpptkshsrqrsnvgryPhdi 465
                 a+ e e+++++d +++ rk + + d ++    ad d+d +++s    + e+e+dd + p    +r ++ + + P++ 
  KIR65073.1 125 AEAEAEEAEKADGKSRRRKPTADADAAD--ADADTDADATEESDA-DDAEDEADDEEVPVFLSHRGKLLLFKTPESL 198
                 5677888999999999999999998655..667778888888776.789999*******999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 2367.99
//
Query:       KIR65074.1  [L=111]
Description: PadR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-23   81.3   0.1    4.6e-23   81.0   0.1    1.1  1  PadR      Transcriptional regulator PadR-like family
      9e-05   22.6   0.0    0.00012   22.1   0.0    1.2  1  HTH_34    Winged helix DNA-binding domain
     0.0055   16.6   0.0      0.015   15.2   0.0    1.7  1  TrmB      Sugar-specific transcriptional regulator TrmB
  ------ inclusion threshold ------
      0.016   15.7   0.1      0.035   14.6   0.1    1.6  1  HTH_27    Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.1     1e-26   4.6e-23       1      74 [.      14      86 ..      14      87 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 1e-26
                HHHHHCCS-EEHHHHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHH CS
        PadR  1 iLalleeqpsyGyeiikeleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrela 74
                +La+le++ ++Gy+ii++l+++seg+l+l  G++YpaL+rLe+ g v+s+w++ ++g++r++Y+lTd Grr+la
  KIR65074.1 14 LLAVLERGALHGYAIIEALRARSEGALDLPTGTIYPALRRLERAGHVASSWST-VNGRERRTYELTDSGRRALA 86
                79**************************************************9.6****************986 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.8e-08   0.00012      23      71 ..      39      87 ..      28      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.8e-08
      HTH_34 23 aleatdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGreafkk 71
                al + +g ++  l+ Le ag +  + + +++++r ++++T+ Gr a + 
  KIR65074.1 39 ALDLPTGTIYPALRRLERAGHVASSWSTVNGRERRTYELTDSGRRALAG 87
                577889***************************************9875 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.3e-06     0.015      31      62 ..      39      75 ..      12      80 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.3e-06
                CTTSSCHCHHHHHHHHHHCTSEEEESST.....TTEE CS
        TrmB 31 elgvprskvYevLrsLedkGlVerekgr.....pklY 62
                +l++p  ++Y +Lr+Le++G V  + ++     ++ Y
  KIR65074.1 39 ALDLPTGTIYPALRRLERAGHVASSWSTvngreRRTY 75
                5799******************987666556555555 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   7.7e-06     0.035      27      68 .]      39      81 ..      10      81 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.7e-06
      HTH_27 27 rlnvedshisyslkkLtekGLvertgdeadrre.krvrlTdkG 68
                +l++   +i  +l++L+++G v ++ +  ++re ++++lTd+G
  KIR65074.1 39 ALDLPTGTIYPALRRLERAGHVASSWSTVNGRErRTYELTDSG 81
                67777788889**********************899*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 1007.32
//
Query:       KIR65075.1  [L=230]
Description: hypothetical protein TK50_06060 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.067   13.4   0.1       0.12   12.6   0.1    1.4  1  DUF1380   Protein of unknown function (DUF1380)


Domain annotation for each model (and alignments):
>> DUF1380  Protein of unknown function (DUF1380)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   6.6e-06      0.12      79     129 ..      12      62 ..       6      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-06
     DUF1380  79 qvkenrktvtvpadllatllrtaeqalwkrewaardaglavPesvtrrlad 129
                  ++e + ++  pa l a ll+ a +al +   a rd gl+  e+ +r  a+
  KIR65075.1  12 RLRELGDRLYGPARLKADLLTEARHALQDAVEAYRDGGLPAAEAAQRAVAE 62 
                 577778888899**********************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1687.58
//
Query:       KIR65076.1  [L=335]
Description: cytochrome D ubiquinol oxidase subunit II [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-64  217.9  33.9    2.2e-64  217.7  33.9    1.0  1  Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.7  33.9   1.2e-68   2.2e-64       1     303 []       1     323 [.       1     323 [. 0.93

  Alignments for each domain:
  == domain 1  score: 217.7 bits;  conditional E-value: 1.2e-68
  Cyt_bd_oxida_II   1 lqliwflligvllagYvvldGfDlGvGillpllakkdeerrlllnsigpvWdgnevWLvtaggalfaaFPlayatlfsglylpllliLlglilR 94 
                      ++l w++l+g++lagY+vl+G+D+GvG+ll   +   ++rr++l+++gp++ gnevWLv++ g+lf+aFP++   l+sg+y ++ ++L g i  
       KIR65076.1   1 MELAWYALLGLFLAGYLVLAGYDYGVGLLLAR-GGPPAHRRAALTAVGPFFLGNEVWLVATAGILFGAFPALEGELLSGFYPVVAAALGGTITV 93 
                      6789*************************998.67778******************************************************** PP

  Cyt_bd_oxida_II  95 gvafefrskaeskrwrklwdlaffigSllaalllGvalgnllqGvpfdad.eygflsdllnpfallvglllvalflllGalylalktegelqer 187
                       v+++ rs+ + +  r+ wd ++++gSl aa+ +G++l+ llqGvp+ ad +++ ++++ +pfa l+gl++ al++ +Ga++l+l+   e+++ 
       KIR65076.1  94 TVGVQLRSRPTGEPTRAAWDRVVAAGSLAAAFGWGALLAGLLQGVPLAADgHVTGVGHVATPFAALAGLAMAALMAAHGATFLTLRLPAEAAAP 187
                      **********9888*********************************9886555777899***************************9999999 PP

  Cyt_bd_oxida_II 188 arrlalvlalvllvllvvvllwtll...............lvllllavlalllavlllrkkreglaflasaltvllvvlllavslfPyllpss. 265
                      + r+a++l++++l+++++++++ ll               l++ l+ v all+a  +l+++r g+af+a++++++l v++++++l+Py l+s+ 
       KIR65076.1 188 LTRTARRLVAAALAAVALAAVAGLLsdrvraatqrplpavLLP-LVLVTALLVARTALERRRPGVAFAATSAALALPVVGVGAALWPYALVSTg 280
                      9999999998888888888887777888999999998852233.566666666668888899******************************** PP

  Cyt_bd_oxida_II 266 .....ltianaasseytlkvmlivalillplvlaytawlyrvf 303
                           l++a+aa+s  tl+++ + +l llp +l+ +a++++vf
       KIR65076.1 281 apgasLSVADAAASGPTLTLLGWLVLPLLPALLGFQAMCWWVF 323
                      ******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       870  (0.0485247); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2313.52
//
Query:       KIR65077.1  [L=416]
Description: cytochrome BD oxidase subunit I [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     4e-111  371.6  38.3    6.2e-90  301.8  19.6    2.0  2  Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I
  ------ inclusion threshold ------
       0.34   10.4   0.1       0.34   10.4   0.1    3.2  3  UPF0220         Uncharacterised protein family (UPF0220)
       0.86    9.5   0.0       0.86    9.5   0.0    2.5  3  COX14           Cytochrome oxidase c assembly


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.8  19.6     1e-93   6.2e-90       1     246 [.       6     251 ..       6     263 .. 0.98
   2 !   76.1  10.6   3.3e-25     2e-21     305     417 ..     273     392 ..     266     393 .. 0.86

  Alignments for each domain:
  == domain 1  score: 301.8 bits;  conditional E-value: 1e-93
  Cyt_bd_oxida_I   1 laRlqfaltavfHflfvpltlGlalllailetlylrtgdekykklakfwgklfainFavGvvtGivlefqfgtnWseysrfvGdifgapLaiEgl 95 
                     laRlqfa+t+++Hflfv +tlGl  ll+ l+t++  tg+++y++l++fwg+l++in+++G+ tG+++efqfg+nWs+ sr+vG++fgapLaiE+l
      KIR65077.1   6 LARLQFATTTSLHFLFVVVTLGLVTLLVGLQTAWAITGNPAYERLTRFWGQLYVINYVLGIGTGLLMEFQFGLNWSGLSRYVGNVFGAPLAIETL 100
                     89********************************************************************************************* PP

  Cyt_bd_oxida_I  96 lAFflEstflglmlfgwdrvskklhllatwlvaigtllSalwIlaanswmqtPvGaelnpdtgraeltdflavlfnpsalakflHtvlaalltaa 190
                     +AFflEstflg+++fgw+r+++++hl+++w va+ +++Sa+wI++an+w+q+PvG+e++ d+  a+ltdf a+l+np++  +f H+v+aallt++
      KIR65077.1 101 VAFFLESTFLGMWIFGWHRLRRGVHLALLWGVALTAYASAFWIMVANAWLQHPVGYEVR-DG-VAHLTDFGALLTNPTLGLAFGHVVAAALLTGG 193
                     **********************************************************8.65.99****************************** PP

  Cyt_bd_oxida_I 191 ffvagvsawyllr..rekefarkslkialvvalvaallqallGdlsgkevaetqpaKl 246
                     +++a+vsaw+l+r   +++++r+sl+i+lv+a+v++ l+  +G ++   v + qp+K+
      KIR65077.1 194 MLMAAVSAWHLIRrtPDHALFRASLRIGLVTAAVSISLVQGFGFAQFGPVGQAQPTKF 251
                     *************877777**************************************8 PP

  == domain 2  score: 76.1 bits;  conditional E-value: 3.3e-25
  Cyt_bd_oxida_I 305 evPpvalvfwsfrimvglgvlllllallalll........rwllrllllaiplpfiaveaGWivtevGRqPWivygllrtadavspvsagevlls 391
                     ++Ppv l  +   +m+ +g+ll  l+ll  ll        r+ l+l+lla+plpf+av++GWi +evGRqPW+ ygll t+ avspv+ g +l+s
      KIR65077.1 273 YTPPV-LADVGLGFMILIGFLLGGLWLLLPLLwrdwvirlRFPLWLVLLALPLPFVAVILGWIAREVGRQPWVAYGLLSTERAVSPVAPGVMLAS 366
                     55553.3334455688888888888777432245888999889**************************************************** PP

  Cyt_bd_oxida_I 392 lilflllylvLlvvevylllklikkg 417
                     li+f+ll   L+v+ ++l+++ + +g
      KIR65077.1 367 LIGFTLLLGGLAVANWVLFARHAARG 392
                     ******************99998776 PP

>> UPF0220  Uncharacterised protein family (UPF0220)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1     0.055   3.3e+02     103     131 ..     128     154 ..     119     173 .. 0.62
   2 ?   -0.2   0.6      0.11   6.5e+02     105     122 ..     283     300 ..     281     308 .. 0.93
   3 ?   10.4   0.1   5.7e-05      0.34     104     130 ..     367     393 ..     349     400 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.055
     UPF0220 103 LflGfallagglagslvvlilkYvvkdyt 131
                 L+ G+al+a   a+++++++++  +++ +
  KIR65077.1 128 LLWGVALTA--YASAFWIMVANAWLQHPV 154
                 555555544..456666666665555544 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.11
     UPF0220 105 lGfallagglagslvvli 122
                 lGf++l g l g+l++l+
  KIR65077.1 283 LGFMILIGFLLGGLWLLL 300
                 79*************985 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 5.7e-05
     UPF0220 104 flGfallagglagslvvlilkYvvkdy 130
                 ++Gf+ll ggla + +vl++ +  +++
  KIR65077.1 367 LIGFTLLLGGLAVANWVLFARHAARGA 393
                 79*****************99877655 PP

>> COX14  Cytochrome oxidase c assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.6      0.77   4.6e+03      16      35 ..      21      40 ..      19      47 .. 0.82
   2 ?   -3.4   0.1       1.5     9e+03      25      44 ..     187     206 ..     184     208 .. 0.56
   3 ?    9.5   0.0   0.00014      0.86      19      42 ..     365     388 ..     362     395 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.77
       COX14 16 ltVltLiGvTlyaggllvyt 35
                ++V+tL  vTl  g+ +++ 
  KIR65077.1 21 FVVVTLGLVTLLVGLQTAWA 40
                57999999999999888776 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.5
       COX14  25 Tlyaggllvytvysygkynr 44 
                  +  +g+  + ++s  + +r
  KIR65077.1 187 AALLTGGMLMAAVSAWHLIR 206
                 44555666666666665555 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00014
       COX14  19 ltLiGvTlyaggllvytvysygky 42 
                  +LiG+Tl  ggl+v + +   ++
  KIR65077.1 365 ASLIGFTLLLGGLAVANWVLFARH 388
                 69*************997766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2888.94
//
Query:       KIR65078.1  [L=301]
Description: peptidase M48 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-12   46.3   0.1    7.9e-12   45.4   0.0    1.4  2  Peptidase_M48  Peptidase family M48
    4.5e-06   26.1   0.0    6.3e-06   25.6   0.0    1.2  1  Peptidase_M56  BlaR1 peptidase M56


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   8.8e-16   7.9e-12       8      85 ..     121     194 ..     114     208 .. 0.82
   2 ?   -3.8   0.1      0.99   8.8e+03     137     161 ..     220     243 ..     218     249 .. 0.71

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 8.8e-16
                    HHHHHHHHHHTT-..-EEEEEEE-GGGT-EEEEESSS-EEEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48   8 kevveelakeaglpkpltkvyvvnspkrNAFalgggknkrivltdgLlkqllseeelaaVlGHElGHikhrhsvvsli 85 
                    ++ +  l+++ +   + ++ +v+++p++ A++l+g k  r+v++ g l ++l+++elaaVl HE +H++ rh +v l 
     KIR65078.1 121 HRDLLALVARRDP--EVPGALVLDHPSAAAYCLPGVKP-RVVVSAGAL-SMLDRAELAAVLTHERAHAQERHDLVLLP 194
                    4444445444444..77999****************66.*********.***********************987655 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.99
                    HHHHHHHHHHTTT.HHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48 137 EyqADeagvellkrakdlvralikl 161
                    E++AD  + el + ++ l+ al ++
     KIR65078.1 220 EMRADDKARELHA-EAPLAGALRRF 243
                    8889988888888.66666666655 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0     7e-10   6.3e-06     177     227 ..     154     205 ..     100     227 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 7e-10
  Peptidase_M56 177 lkprIvlPadflkklsdeeleyillHElaHlk.rkDllvnllvavlqclfwf 227
                    +kpr+v++a  l  l+ +el+ +l+HE+aH++ r+Dl+   + a+   l wf
     KIR65078.1 154 VKPRVVVSAGALSMLDRAELAAVLTHERAHAQeRHDLVLLPFTALCRALPWF 205
                    79****************************97589****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2545.01
//
Query:       KIR65079.1  [L=157]
Description: penicillinase repressor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-21   76.5   0.0    2.5e-21   76.2   0.0    1.1  1  Penicillinase_R  Penicillinase repressor
    0.00015   21.5   0.0    0.00026   20.8   0.0    1.3  1  TrmB             Sugar-specific transcriptional regulator Trm
     0.0089   15.8   0.0      0.028   14.2   0.0    1.8  2  LexA_DNA_bind    LexA DNA binding domain
  ------ inclusion threshold ------
      0.012   16.3   0.0       0.02   15.5   0.0    1.4  1  RPA_C            Replication protein A C terminal
      0.019   15.2   1.4       0.15   12.3   0.2    2.1  2  PaaX             PaaX-like protein
      0.025   14.4   2.0       0.12   12.3   0.6    2.5  2  MarR_2           MarR family
      0.044   13.4   0.6       0.14   11.8   0.7    1.7  1  GntR             Bacterial regulatory proteins, gntR family
      0.046   13.7   0.0      0.078   12.9   0.0    1.3  1  MarR             MarR family


Domain annotation for each model (and alignments):
>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.0   1.1e-24   2.5e-21       1     113 [.       4     116 ..       4     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 1.1e-24
                      ---S-SHHHHHHHH.....HS-EEHHHHHHT--GGG---HHHHHHHHHHHHHTTS-EEEEETTEEEEE----XXXXXXXXXXXXXXXXXXXXXX CS
  Penicillinase_R   1 lgelEaevmeilwe.....kgeatvkevveeleeekelaysTVktllrrLvkKgllsrekegrafiYsplvseeeavasavkqlldklfegsvk 89 
                      lg+lE++vm++lw+     ++ +tv+ev e+l+ + elay+TV+t+l rL  Kg+++r++egra +Y++++s+e  +a+ + + ld  ++gs+ 
       KIR65079.1   4 LGDLERAVMDVLWDtvpgtSDGVTVREVAEALDGR-ELAYTTVMTVLDRLAGKGMVRRQREGRAWRYQAAASREAHIAQLMLDALD--LGGSRD 94 
                      79***********8333324569**********99.*************************************************9..678*** PP

                      XXXXXXXXXXXXXXXXXXXXXXXX CS
  Penicillinase_R  90 elvaafveeeklseddleeLrell 113
                      +++++f+++  ++ +++e Lr++l
       KIR65079.1  95 AALVRFARS--VTGTEAEVLRAAL 116
                      *********..9999999999887 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.1e-07   0.00026      21      64 ..      24      71 ..      12      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.1e-07
                CCCHHCHHCCCTT...SSCHCHHHHHHHHHHCTSEEEESSTTT.EEEE CS
        TrmB 21 gpatadeiaeelg...vprskvYevLrsLedkGlVerekgrpk.lYra 64
                +  t++e+ae+l+   + +++v  vL +L  kG+V+r+++ +  +Y+a
  KIR65079.1 24 DGVTVREVAEALDgreLAYTTVMTVLDRLAGKGMVRRQREGRAwRYQA 71
                6789*******95444889*******************9876558887 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.3e-05     0.028       1      59 [.       1      61 [.       1      66 [. 0.86
   2 ?   -2.1   0.0       1.5   3.4e+03      21      29 ..     119     127 ..     110     133 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
                   XX---HHHHHHHHHHHHHHHHHSS---HHHHHHHHTS-...HHHHHHHHHHHHHTTSEE-G CS
  LexA_DNA_bind  1 mkkLTerQrevldlikasieetgypPsireiaralglk..SpsaveehLkaLerKGyierd 59
                   m+ L +  r v+d++ + +  t    ++re+a+al  +     +v   L +L+ KG+++r+
     KIR65079.1  1 MTRLGDLERAVMDVLWDTVPGTSDGVTVREVAEALDGRelAYTTVMTVLDRLAGKGMVRRQ 61
                   7788888999*************************755223679***************97 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.5
                    HHSS---HH CS
  LexA_DNA_bind  21 etgypPsir 29 
                    e g pP+ r
     KIR65079.1 119 EAGAPPTGR 127
                    679999977 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0     9e-06      0.02      48      97 ..       5      58 ..       1      59 [. 0.92

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9e-06
                XHHHHHHHHHHHH..SXSTTTEEHHHHHHHS...TSXHHHHHHHHHHHHHTTSE CS
       RPA_C 48 talaqqvlnlikq.speseeGvhvdeiaqkl...rlsvndvkqavdeLsneGii 97
                 +l++ v++++ +  p + +Gv v+e+a++l   +l   +v  ++d L+++G++
  KIR65079.1  5 GDLERAVMDVLWDtVPGTSDGVTVREVAEALdgrELAYTTVMTVLDRLAGKGMV 58
                678899*****99999**************99888999**************97 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   6.7e-05      0.15      19      65 ..      24      70 ..      10      74 .. 0.80
   2 ?    1.9   0.1      0.12   2.7e+02      24      44 ..      95     116 ..      81     121 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.7e-05
        PaaX 19 gaiwlgsLirllaelGiseslvRaalsRlakaGwlvrekegrrsfYr 65
                  + +++  + l +  +  ++v + l Rla +G ++r++egr+  Y+
  KIR65079.1 24 DGVTVREVAEALDGRELAYTTVMTVLDRLAGKGMVRRQREGRAWRYQ 70
                55677777777777788889999*******************98886 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.12
        PaaX  24 gsLirllael.GiseslvRaal 44 
                 + L+r+  ++ G +++++Raal
  KIR65079.1  95 AALVRFARSVtGTEAEVLRAAL 116
                 579999988768999999**98 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   5.2e-05      0.12      16      56 ..      22      63 ..       6      68 .. 0.82
   2 ?    0.7   0.0      0.22   4.9e+02       3      19 ..     104     121 ..     102     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.2e-05
                CTTTSEEEHHHHHH...HHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 16 rrpgrdltvgelar...rlglsksavsrilkrLvaaGLverrpg 56
                 ++g  +tv+e+a+      l   +v  +l+rL  +G+v+r++ 
  KIR65079.1 22 TSDG--VTVREVAEaldGRELAYTTVMTVLDRLAGKGMVRRQRE 63
                5777..99999999333446999******************975 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.22
                 --HHHHHHHHH.HHCTTT CS
      MarR_2   3 ltpaqarvLaa.Lgrrpg 19 
                 +t+++a vL a Lg++ g
  KIR65079.1 104 VTGTEAEVLRAaLGAEAG 121
                 6999*****997888777 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7   6.3e-05      0.14      27      59 ..      28      63 ..      23      67 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.3e-05
                HHHHHHHHTS...-HHHHHHHHHHHHHTTSEEEETT CS
        GntR 27 ereLaaefgV...srttvReALrrLeaeglverrqg 59
                +re+a++++      ttv+ +L+rL+ +g+v r++ 
  KIR65079.1 28 VREVAEALDGrelAYTTVMTVLDRLAGKGMVRRQRE 63
                6666666654111469***************99875 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.5e-05     0.078      32      51 ..      43      62 ..      23      64 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.5e-05
                HHHHHHHHHHHHTTSEEEEE CS
        MarR 32 stvtrvldrLekkGlieRsk 51
                +tv +vldrL  kG+++R++
  KIR65079.1 43 TTVMTVLDRLAGKGMVRRQR 62
                6999**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1306.37
//
Query:       KIR65080.1  [L=274]
Description: aldehyde dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-32  110.7   5.1    1.2e-31  109.7   5.1    1.4  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7   5.1     7e-36   1.2e-31      21     232 ..      33     240 ..      29     242 .. 0.88

  Alignments for each domain:
  == domain 1  score: 109.7 bits;  conditional E-value: 7e-36
                 EEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHSE...EEEEECT CS
      Aldedh  21 akvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelaekleg...evlpsse 116
                 a+v+ a+++d+++av aA++a k+wa  +a++R++iL+++a++le r+e++++l +            ev+ aid   +ya++ +kl +    + p++ 
  KIR65080.1  33 ANVSLASRKDARDAVVAARAAVKGWAGATAYNRGQILYRVAEMLEGRREQFVALGVP---------GDEVDAAIDRWVWYAGWSDKLPQvygGANPVAG 122
                 7899***********************************************998765.........458999999999999998886541104456679 PP

                 TEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH-TTESEEEEES-H CS
      Aldedh 117 gklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealvehpevdkvsftGst 215
                  +++l+  eP Gvv++++P    ll ++  +apa+++GNtvv+  +++ pl a+ lae+++  +lP gv+n++tg   e+  +l++h +v+++ +tG +
  KIR65080.1 123 PYFNLSAPEPTGVVAVVAPESPALLGLVSVIAPAIVTGNTVVVAASPTQPLAAVTLAEVLATSDLPGGVVNILTGALTETVPTLAAHMDVNAIDLTGVS 221
                 9******************666666678999******************************************************************76 PP

                 HH..HHHHHHHHHCTTSEE CS
      Aldedh 216 ev..grkiakaaaknlkrv 232
                 +   + ++  +aa+nlkrv
  KIR65080.1 222 DAalAADLEVRAAENLKRV 240
                 5511566777788899987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2151.86
//
Query:       KIR65081.1  [L=319]
Description: deoxyribose-phosphate aldolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-27   96.4   0.2    2.6e-27   96.0   0.2    1.1  1  DeoC      DeoC/LacD family aldolase
  ------ inclusion threshold ------
       0.15   11.2   0.0        0.3   10.3   0.0    1.4  1  DHO_dh    Dihydroorotate dehydrogenase


Domain annotation for each model (and alignments):
>> DeoC  DeoC/LacD family aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.2   2.9e-31   2.6e-27       3     232 ..      55     297 ..      54     300 .. 0.88

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 2.9e-31
                 EEEECCSHHHHHHHHCTSSHHHHHHHHHHHHHHGG........GSSEEEEETTTHHHHHHCSCT....TSEEEEETECSSCCTTSTTEEEETTCHHHHH CS
        DeoC   3 ilavDqrvankddtasaqneqledlkalvkealtp........gasavlldpgviasaskeyak....diallvkldkgtyllkskqrdvdevasveea 89 
                 ++a+D+ + + d+t  + ++   +++al+++al+p        + +av+++p ++++++  +       +++++++++g+  l+ k      +a++++a
  KIR65081.1  55 AQAIDLAIRMVDLTTLEGADTPGKVRALAAKALRPdpadpscpHVGAVCVYPAMVPHVAEVLRGsgvhLASVATAFPSGQAPLEVK------LADTRAA 147
                 57899999999999999899999**********************************99887766888889999999999999999......9****** PP

                 HHTT-SEEEEEEEEHTTTTCHHHHHHHHHHHHHHHHHHHTEEEEEE.EEE-CTTBSSTTCHHHHHHHHHHHHTCCT-SEEEE--SSCC.B.HHHHHHHH CS
        DeoC  90 kalGAdavkvvvyyradgseeeqqklaeikrvkeacheeglplile.lylrdeaikdekvdpdlvaeAarvsaelGaDiiKvevpkevvnateedaevf 187
                 +a+GAd++++v+++ a  +++ q++++ei + k+ac++++l++ile ++l + +         +v++A+++++ +G D+iK++++k+ v at  +  v+
  KIR65081.1 148 VAAGADEIDMVINRGAFLAGRYQEVYDEIVATKQACGDAHLKVILEtGELATYD---------NVRRASWLAMLAGGDFIKTSTGKVPVAATLPVTLVM 237
                 *************************************************99999.........9*********************************** PP

                 HHHHHCHSST.....EEEEETTSSHHHHHHHHHHHHH......HHTH..........CEEEESHHH CS
        DeoC 188 kdvikaapvp.....gvvlsGGvseedfletvedAvk......eaga..........sGvlsGRai 232
                  +++++ +       gv+++GG+      +t +dA+k      e ++          +G++s++++
  KIR65081.1 238 LEAVRDFRAAtgrqvGVKPAGGI------KTTKDAIKylvlvnETVGgdwldpdwfrFGASSLLND 297
                 *******999655544*******......6666665544333322225788888888888888876 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   3.3e-05       0.3     229     263 ..     236     270 ..     228     272 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.3e-05
                 HHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHH CS
      DHO_dh 229 ialkvirelykrlkkeipiIgvGGiesgeDaleki 263
                 + l+ +r++++ +  ++ +   GGi++ +Da+ ++
  KIR65081.1 236 VMLEAVRDFRAATGRQVGVKPAGGIKTTKDAIKYL 270
                 67899**************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2284.23
//
Query:       KIR65082.1  [L=210]
Description: uracil phosphoribosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-59  199.7   0.0      4e-59  199.5   0.0    1.0  1  UPRTase       Uracil phosphoribosyltransferase
    3.6e-10   39.6   0.0    5.2e-10   39.1   0.0    1.2  1  Pribosyltran  Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.5   0.0   4.5e-63     4e-59       1     206 [.       5     205 ..       5     206 .. 0.98

  Alignments for each domain:
  == domain 1  score: 199.5 bits;  conditional E-value: 4.5e-63
     UPRTase   1 vsshpllkakltilRdastsrkdfrelvdriarllaeealsallpveevtvttplgkeysgelldeekialVpilRaGegmeealrellpearvghlgl 99 
                 v++hpl+++ lt +Rda+t++++fr+++++++++l++ea ++ +pve+++v+tp++  + ++l ++   +lVp+lRaG+gm++a++ llpe ++g +gl
  KIR65082.1   5 VIDHPLAQSRLTAMRDARTDSSSFRAALHELTTMLVYEAARS-FPVEKYPVQTPVTGAEGTRLANP--PLLVPVLRAGLGMADAALGLLPESSMGFVGL 100
                 689**************************************8.***************99999886..99***************************** PP

     UPRTase 100 qreeetlepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlaeefpkvkvvtaavDeeldekgyivpGlG 198
                  r+eet ep+ y++ LP+++a   vl+lDp++aTGgs+ ++++lL +rg+   +I+vl+vla++ g++rl e+   +++vta++De+l++k +ivpGlG
  KIR65082.1 101 ARDEETYEPRAYMESLPRDLAGLPVLVLDPMLATGGSLEHCCRLLADRGC--TDITVLCVLAAPVGIRRLEESGLPLRLVTASIDEGLNDKMFIVPGLG 197
                 ***********************************************998..59********************************************* PP

     UPRTase 199 DfGDRlFg 206
                 D+GDR Fg
  KIR65082.1 198 DAGDRQFG 205
                 *******8 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   5.8e-14   5.2e-10      29     129 ..      68     164 ..      61     183 .. 0.87

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 5.8e-14
                   GGEEEEEEETTTHHHHHHHHHHS.TT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEEEEEEEE CS
  Pribosyltran  29 kpdvvvgiargGvpfakiladeL.evplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgpeevriavlv 124
                   +p+++v+++r G+ +a++    L e  + +v   + ++   + a   s     l++d+ag  Vl+ D +l+tGg+l++ ++lL+++g++ + + +++
    KIR65082.1  68 NPPLLVPVLRAGLGMADAALGLLpESSMGFVGLARDEETYEPRAYMES-----LPRDLAGLPVLVLDPMLATGGSLEHCCRLLADRGCTDITVLCVL 159
                   89*********************8777888888887777777775333.....9**************************************99999 PP

                   E-HHH CS
  Pribosyltran 125 dkpat 129
                   + p +
    KIR65082.1 160 AAPVG 164
                   87765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1478.29
//
Query:       KIR65083.1  [L=225]
Description: hypothetical protein TK50_06115 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-44  150.8   8.9    5.7e-44  150.6   8.9    1.1  1  GPP34     Golgi phosphoprotein 3 (GPP34)


Domain annotation for each model (and alignments):
>> GPP34  Golgi phosphoprotein 3 (GPP34)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6   8.9   3.2e-48   5.7e-44       1     184 [.       6     187 ..       6     220 .. 0.89

  Alignments for each domain:
  == domain 1  score: 150.6 bits;  conditional E-value: 3.2e-48
       GPP34   1 LaeellLLalddekgrlsfandnlsyaLaGAiLiELalrgriavdkeggrvvvidsrptgdplldealklikaserprsvktwvdllsksvrervakgL 99 
                 LaeellLLa+dde+g+    + +l++++a+A+LiELal+gr+a    +g +vv+d++ptg+p+lde+l +++a+  p+s+++wv++l++++r+r+++ L
  KIR65083.1   6 LAEELLLLAYDDESGKATMPRISLDLGMAAAVLIELALAGRVAY--ADGNLVVTDPAPTGEPILDEVLGRMAAD-TPHSPSSWVQRLRHGLRDRILATL 101
                 89***************999999*********************..89***********************955.6699******************** PP

       GPP34 100 vdkGilrtekrrflglfdmtthpvadtaakeavrrrvraaltsgepadprtaaLvallaaagllenllpdl.ear.eaaarakelle 184
                 v++G++r ++   lg+++ +++p+ad +++e+ rrr+++al++g+ +d+ taaL++l+a +++   +l  + ea  +a++r++e++ 
  KIR65083.1 102 VAQGVVRDVEETELGFIHVHRYPTADGTVEEDTRRRLAEALAGGQLPDEATAALATLVAVLRME-PALGLTgEAAvDARRRLEEIAG 187
                 ***************************************************************5.55554456663666*****943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1712.63
//
Query:       KIR65084.1  [L=592]
Description: phosphomannomutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-35  121.9   0.0    3.1e-35  120.9   0.0    1.5  1  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
    3.4e-25   88.7   0.1      2e-24   86.2   0.2    2.3  2  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
    4.3e-18   65.6   0.0    7.8e-18   64.7   0.0    1.4  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
    8.7e-09   35.4   0.5    2.9e-08   33.8   0.5    2.0  1  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina
  ------ inclusion threshold ------
      0.028   14.7   0.4        1.2    9.4   0.1    2.9  3  SbcD_C       Type 5 capsule protein repressor C-terminal doma
       0.44   10.3  10.0        0.1   12.4   5.4    2.2  2  Collagen     Collagen triple helix repeat (20 copies)


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.0     1e-38   3.1e-35       3     114 ..      66     180 ..      64     209 .. 0.88

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 1e-38
                 GBBTTCEEEECCHCT..BSCCHHHHHHHHHHHHCHHCSTS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEE.EB-HHHHHHHHHHCCECEEEEE- CS
   PGM_PMM_I   3 kfgtsGlRgkvgege..ltpelveklgqaiaeylkaeakkkkvvvGrDtRvssrelaealaaglaanGvevillg.llptPavsfairklkadagimit 98 
                 +fgt+GlRg   +g+  ++ ++v++++++++ +l+a+++++++v+G+D+R+ sre+ae +a++++ +G  ++ll  +lptP++++a+r+l+a+ag+m+t
  KIR65084.1  66 TFGTAGLRGPLRAGPngMNLAVVTQAAAGLVAWLAAQDATGPLVIGYDARHGSREFAERTAQVATGAGRAALLLPrPLPTPVLAYAVRQLDAAAGVMVT 164
                 7*************9************************************************************************************ PP

                 -TTS-TTCCCEEEEET CS
   PGM_PMM_I  99 aSHnppeyngiKvyls 114
                 aSHnpp++ng+Kvyl 
  KIR65084.1 165 ASHNPPQDNGYKVYLG 180
                 **************75 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         4   1.2e+04      17      40 ..      39      62 ..      30      71 .. 0.76
   2 !   86.2   0.2   6.8e-28     2e-24       2     100 ..     230     331 ..     229     334 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4
                HHHT-EEEEE-TT-TTHHHHHHHH CS
  PGM_PMM_II 17 kksglkvvidplhGaggeilkell 40
                ++++l+ v+d l G++ e++++  
  KIR65084.1 39 SRDELQAVLDGLPGSAPELADRFA 62
                456788899999999988887765 PP

  == domain 2  score: 86.2 bits;  conditional E-value: 6.8e-28
                 HHHHHGGGTS-HHHHHHHT-EEEEE-TT-TTHHHHHHHHHHTT-...EEEES-----TT-TT.SS----TT-TTTTHHHHGGGGG-SEEEEE-TTS-BE CS
  PGM_PMM_II   2 aYiealkekvdseaikksglkvvidplhGaggeilkellkelgv...dvvelnaepdpdfpt.kapnpeekealkllielvkkegadlglafDgDaDRl 96 
                 +Y+++ ++ vd      ++lkv+++plhG+g+ +l  ++ ++g+    vv+ +a pdpdfpt ++pnpee+ a+++l+ l+++++adl++a+D+DaDR+
  KIR65084.1 230 SYVDRAAAVVD--PAGARRLKVAYTPLHGVGAAVLTAAFARAGFgipGVVPDQAVPDPDFPTvSFPNPEEPGAIDRLVGLARRTDADLAIANDPDADRC 326
                 59999999999..4667889******************************************************************************* PP

                 EEE.E CS
  PGM_PMM_II  97 gvv.d 100
                 +v+  
  KIR65084.1 327 AVAvR 331
                 *9953 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   2.6e-21   7.8e-18       2     113 ..     367     481 ..     366     482 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 2.6e-21
                  HHHHHHHHHHHHHCHCSTTTCEEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHTT.ECEEEETTCEEEET.TTBSS--HHHHHHHHHHHHH CS
  PGM_PMM_III   2 gdqllallakylleeklkpgagvvktvmtslalervakklgiklvetkvGdkyvleemkeeg.avlGgEeSghiifl.deattkDGilaallvleila 97 
                  gd++++lla++l ++   +g   ++t+++s++l+ +++++g+++ et +G+k+++++   +  +v+G+Ee  ++++  +++++kDGi aal v+e++a
   KIR65084.1 367 GDEVGVLLADHLMRR-GVQGL-YATTIVSSSLLRAMCAARGLPYDETLTGFKWIVRAGGGSApLVYGYEEALGYCVApEHVRDKDGITAALTVAELAA 462
                  9***********996.77787.9********************************995544369*******999988899****************** PP

                  ...HHTS-HHHHHHHHHHH CS
  PGM_PMM_III  98 ...etgkslselleellkk 113
                      +g+sl + l+el ++
   KIR65084.1 463 glkAQGRSLTDRLDELAAE 481
                  997779****999988765 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.5   9.8e-12   2.9e-08       4      67 ..     492     570 ..     445     579 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 9.8e-12
                 CCHCC-TT.....EECCCCCTTH.............HCCCCCCCCGCCEEEE.EEEETTCCEEEEEEEESSHHHHHHHHH CS
  PGM_PMM_IV   4 vrveekak...vvaalaallkva.............sikeglkilledGrrlavRpSGTepllrvyvEaksdeelarlae 67 
                 vrv++++    ++a+++a++ +              ++++++  ++e +r++ +RpSGTep+l+ y+E  + ++  ++ +
  KIR65084.1 492 VRVDDLRIiadTMARVRAATPTTllgqpvteardllPEADVVILRNEAARVV-IRPSGTEPKLKAYLEVVEPAADGDVPA 570
                 5666663322234444444443388888888888888999988888888888.****************98888777765 PP

>> SbcD_C  Type 5 capsule protein repressor C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.38   1.1e+03      34      53 ..      32      51 ..      29      57 .. 0.91
   2 ?    9.4   0.1   0.00042       1.2       7      52 ..     470     514 ..     469     536 .. 0.86
   3 ?    0.9   0.0      0.18   5.5e+02      21      56 ..     550     586 ..     529     590 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.38
      SbcD_C 34 dedplpdlrerlrellegip 53
                d+dp p  r++l+++l g+p
  KIR65084.1 32 DDDPDPASRDELQAVLDGLP 51
                89**************9985 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00042
      SbcD_C   7 rlkgdleeilaleepsekpawlevevtdedplpdlrerlrellegi 52 
                 +l+  l+e+ a e+  ++ + l v+v+d  ++ d ++r+r++++ +
  KIR65084.1 470 SLTDRLDELAA-EFGVHHTDQLSVRVDDLRIIADTMARVRAATPTT 514
                 67778899999.467788999***********************98 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.18
      SbcD_C  21 psekpawlevev.tdedplpdlrerlrellegipvev 56 
                 + + +a+lev   + + ++p +r r  ++l+ + +e+
  KIR65084.1 550 EPKLKAYLEVVEpAADGDVPAARSRAATALAALRAEI 586
                 567899***76669***************99998776 PP

>> Collagen  Collagen triple helix repeat (20 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.63   1.9e+03      34      38 ..      71      75 ..      64      84 .. 0.35
   2 ?   12.4   5.4   3.4e-05       0.1      13      40 ..     334     361 ..     331     369 .. 0.38

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.63
                TSS-- CS
    Collagen 34 GekGp 38
                G +Gp
  KIR65084.1 71 GLRGP 75
                11111 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 3.4e-05
                 XXXXXX-----XXXXEEEE-TTSS---- CS
    Collagen  13 GppGkrGepGeaGekGekGpaGekGppG 40 
                 G++G++G +G aG++  +GpaG++G+ G
  KIR65084.1 334 GAAGAAGVAGVAGPATVAGPAGANGSGG 361
                 3333333333333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 4652.19
//
Query:       KIR65085.1  [L=771]
Description: protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-41  142.0   0.0    2.9e-41  141.6   0.0    1.1  1  Pkinase         Protein kinase domain
    1.7e-22   80.0   0.0    2.2e-22   79.6   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    6.2e-09   36.2   0.1    1.1e-08   35.4   0.1    1.4  1  PsbP            PsbP
     0.0027   17.6   3.1        1.1    9.1   0.7    2.5  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.15   10.8   0.0       0.22   10.2   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
       0.18   11.1   0.0       0.28   10.5   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.6   0.0   9.8e-45   2.9e-41       2     258 ..      30     279 ..      29     284 .. 0.88

  Alignments for each domain:
  == domain 1  score: 141.6 bits;  conditional E-value: 9.8e-45
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.....HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS- CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.....kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgsl 95 
                 +  + +G+G++G+V +a+++  ++ vAvK++        ++     +++lrE +  + ++hp +v++y+v++e  + ++v+e+++  +lad++ ++g +
  KIR65085.1  30 SLRSAVGNGGMGTVWRATDTLLRRDVAVKEVVLPPGLAPSDrdamyERTLREARAAAAIQHPAVVQVYDVVTEGGRPWIVMELLDARSLADMVIEDGPV 128
                 566789************************98754322222234559**************************************************** PP

                 -HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHH CS
     Pkinase  96 seeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyellt 192
                 +++ + ki   +l +le  H+ g++HrD+Kp+N+Li ++g   +tDFG+ak  +  +      + g++++++PE   ++++++++D++slGv+ly+ + 
  KIR65085.1 129 APRAVAKIGIALLGALEVAHAIGVLHRDVKPANVLICTDGRCVLTDFGVAKLPTDVQLttPGMVLGSPHFISPERAMGQDFGPPSDLFSLGVTLYTAVE 227
                 ***************************************************98887655577899********************************** PP

                 SS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 193 gkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeel 258
                 g+ppf + +  e          ++  ++    e+ p   + s  ++++l  ll+kdp +Rl ++ +
  KIR65085.1 228 GRPPFDKGDPIE----------TMHAVV----EDPPATPQRSGPLTRVLMGLLEKDPARRLDVHTA 279
                 ******333333..........223333....468999999*******************987765 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   7.4e-26   2.2e-22       3     253 ..      31     277 ..      29     283 .. 0.87

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 7.4e-26
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE......STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl......keeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrk 94 
                  l + +G+G  G+V+++t +      + +VavK +        + ++   e+ l+ea+   +++hp +v+++ v+t++++ +iv+e+++  +L +++ +
   KIR65085.1  31 LRSAVGNGGMGTVWRATDT----LLRRDVAVKEVvlppglAPSDRDAMYERTLREARAAAAIQHPAVVQVYDVVTEGGRPWIVMELLDARSLADMVIE 124
                  56789***********988....7788889987644222244555666888899******************************************99 PP

                  TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHH CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfG 192
                  +   ++  + + ++ + +  ++e  ++  ++Hrd+   NvL++++  + ++DfG+a+   +d + ++ +    + ++++pE  + + f   sD +s G
   KIR65085.1 125 D--GPVAPRAVAKIGIALLGALEVAHAIGVLHRDVKPANVLICTDGRCVLTDFGVAKLP-TDVQLTTPGMVLGSPHFISPERAMGQDFGPPSDLFSLG 219
                  7..99****************************************************88.788888899999999*********************** PP

                  HHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HH CS
  Pkinase_Tyr 193 vllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfs 253
                  v+l+  ++ g+ p+ + ++ e+++++ e+   +   + +  l+++++  +e+dp++R + +
   KIR65085.1 220 VTLYTAVE-GRPPFDKGDPIETMHAVVEDPPAT--PQRSGPLTRVLMGLLEKDPARRLDVH 277
                  ****9999.********9999999997665433..33467788888888888888887765 PP

>> PsbP  PsbP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.1   3.5e-12   1.1e-08       9     155 ..     628     765 ..     621     766 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 3.5e-12
                 TTTTEEEEEETTEEEEE-TTTEEEEEEESS-TTSEEEEEEEE-STT--CHHH--HHHHHHHHHHHCCCHCTSSEEEEEEEEEEEEET.TEEEEEEEEEE CS
        PsbP   9 eedgysflyPsgWqevkgaegadvvFrdeiesdenvsVvispvskdksledlGspeevaerlvkqvlassesgreaelidaeereaddgktyYeleytv 107
                 +++g + ++P+gW++ + ++++ v + d+ ++ ++v++  ++ s     +++  +e +a+ l +        ++  + +++ e+e  dgk   e+eyt 
  KIR65085.1 628 SAKGVTVQVPKGWERRSADGAVWVDYVDPEDNGRKVRILSERWST----SSMRWAESAANGLRSRSA---SCQKPYNQVSMTEQEL-DGKAAAEFEYTC 718
                 66788999*******999977888999999999999999999999....555566777777765444...3457899999999877.5*********** PP

                 EETTEEEEEEEEEEEEETTEEEEEEEEEEHHHHCCCHHHHHHHHHC-E CS
        PsbP 108 kspdeqerhqlaavavsngkLYtltlqtpekrwekvekklekvvkSFr 155
                  + d ++rh +   +v +gk+Y++ l++++ r+ + ++ ++++v SF+
  KIR65085.1 719 GEGD-SKRHGVWRGVVHEGKVYSFYLSSTDARFAESKPIFDQMVASFK 765
                 ****.******************************************8 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.7   0.00038       1.1      39     101 ..      77     139 ..      42     149 .. 0.69
   2 !    8.4   0.1   0.00061       1.8     164     196 ..     148     178 ..     139     181 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00038
                 HHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS..HHHHHHHHHHHHHHHHH CS
         APH  39 revallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr..klsaaqlpellealgef 101
                 r    lr  ++a + + P+v+      +e g+++ ++e +++rsl++   ++ +++p++++++g +
  KIR65085.1  77 RT---LREARAAAAiQHPAVVQVYDVVTEGGRPWIVMELLDARSLADmvIEDGPVAPRAVAKIGIA 139
                 22...233332222355666666669*********************9977888888888887744 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00061
                 S-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 164 lptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                  + ++lH+D +p N+l+  +dgr+  + Df+ a
  KIR65085.1 148 HAIGVLHRDVKPANVLIC-TDGRC-VLTDFGVA 178
                 56789*************.77886.35577765 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   7.4e-05      0.22     325     387 ..     149     205 ..     139     218 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.4e-05
  Pkinase_fungal 325 kagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlk 387
                      +g+LHrD+   N+li+      + + +L D+ +ak   d++    ++   G + F++ e  +
      KIR65085.1 149 AIGVLHRDVKPANVLIC-----TDGRCVLTDFGVAKLPTDVQL-TTPGMVLGSPHFISPERAM 205
                     789**************.....788999***999998776544.4567888888888766555 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   9.4e-05      0.28      91     167 ..     105     176 ..      71     185 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.4e-05
         Kdo  91 rAlllterlegaqdLedllakwaelaeelkrallkavgr....liaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 r  +++e l+ a++L+d++ +    ++ +  + + ++g     + +  h++gv H+d+ + n+l+ +++    +++l D+ 
  KIR65085.1 105 RPWIVMELLD-ARSLADMVIE----DGPVAPRAVAKIGIallgALEVAHAIGVLHRDVKPANVLICTDG----RCVLTDFG 176
                 5678888775.7888888876....34444444444443111145677********************9....9***9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.38
# Mc/sec: 6110.06
//
Query:       KIR65086.1  [L=527]
Description: methylmalonyl-CoA mutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.7e-218  724.2   0.1   8.7e-218  724.0   0.1    1.0  1  MM_CoA_mutase  Methylmalonyl-CoA mutase


Domain annotation for each model (and alignments):
>> MM_CoA_mutase  Methylmalonyl-CoA mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  724.0   0.1  4.9e-222  8.7e-218       3     513 .]       8     519 ..       6     519 .. 0.99

  Alignments for each domain:
  == domain 1  score: 724.0 bits;  conditional E-value: 4.9e-222
  MM_CoA_mutase   3 aegievkplYtaedleek.klgeslPGefPftRGvkatmyrgrpWtirqyagfstaeetnerykklLeaGqtglsvafdlptlrgyDsdhpraege 97 
                    ++g+++k +Yt++dl+e+ + +   PGefP+tRGv++tmy++rpWt+rqyagf+ta e+n+ry++lL aG+ glsvafdlpt++gyDsd+p a+ge
     KIR65086.1   8 ESGFPIKGVYTQADLPEDlPDRLGGPGEFPYTRGVYSTMYTSRPWTMRQYAGFGTATESNARYHQLLRAGTMGLSVAFDLPTQMGYDSDDPIAHGE 103
                    79*************7777777889*********************************************************************** PP

  MM_CoA_mutase  98 vGkaGvaidsledmetlldgidldkvsvsmtinaaalpllamylaaaeeqgvdleklsgtiqnDiLkellargtyiyppepslrliadiieyaake 193
                    vGk+Gvaids+edm+ l+dgi+ldkvs+smtina+   ll +y  +aee gv+ + l+gtiqnDiLke++argtyi+pp+pslrl+ad+++y+++e
     KIR65086.1 104 VGKVGVAIDSIEDMRLLFDGIPLDKVSTSMTINAPGSVLLLLYQLVAEEAGVPGAALNGTIQNDILKEYIARGTYIFPPKPSLRLVADTFAYCRAE 199
                    ************************************************************************************************ PP

  MM_CoA_mutase 194 vpkfntisvsgyhireaGatavqElAftladGveYvralleaGldvdefaprlsFffaigsdffeeiAklRAaRrlWarivkekfgakeekslklr 289
                    vpk+ntis+sgyh++eaGat++qE+Aftla+GveYvra+l+aGl vd+faprlsFff + ++  ee+Ak+RAaRr+War+++++fgak++ks++lr
     KIR65086.1 200 VPKWNTISISGYHMAEAGATPAQEIAFTLANGVEYVRAALAAGLAVDDFAPRLSFFFVARTTLLEEVAKFRAARRIWARLMRDEFGAKNPKSMMLR 295
                    ************************************************************************************************ PP

  MM_CoA_mutase 290 vhaqTsgvsltaqdpyvNilRttlealaAvlggtqslhtnsfDealalPtefsariArntqlilaeEsgvakvvDPlgGSyyvEaLTdelaekawk 385
                    +h+qT+gv+ltaq+p+vN++R++++ l+AvlggtqslhtnsfDea+alPte++ar+A++tq++la+E+ ++ +vDP++GSy+vEa+T+e+++++ +
     KIR65086.1 296 FHTQTAGVQLTAQQPEVNLVRVAIQGLGAVLGGTQSLHTNSFDEAIALPTEKAARLALRTQQVLAYETDLTATVDPFAGSYVVEAMTAEIEAAVVE 391
                    ************************************************************************************************ PP

  MM_CoA_mutase 386 lfqeieeaGGmlkaiesGlvqeeiaesaarrqkaiesrkevivGvNkfrpneeekelevlkideeveerqaerlealraerdeaavkaaLaalgea 481
                    l++++ ++G ++ aie+G++++ei++sa+r +++i+s+++v+vG N+f + ++++++e l++d+++e++qaerl++lr erd+aav++aL +l++a
     KIR65086.1 392 LMERVADHGSVVDAIEAGFQKREIEQSAYRMAQEIDSGERVVVGLNRF-TVDADEPYEPLRVDPTIEAAQAERLAKLRVERDNAAVERALGELRAA 486
                    ************************************************.5666789**************************************** PP

  MM_CoA_mutase 482 arse.nllaraveaaralatlGeisdaleevfg 513
                    a+ + n+l+ + ea+r +at+Ge++ +l++v+g
     KIR65086.1 487 AEGTaNVLHPMKEALRSRATVGEVCGTLRQVWG 519
                    **779***************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3987.43
//
Query:       KIR65087.1  [L=420]
Description: N-acyl-L-amino acid amidohydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-31  107.7   0.1    8.2e-31  107.3   0.1    1.1  1  Peptidase_M20  Peptidase family M20/M25/M40
     0.0001   22.2   0.0    0.00022   21.1   0.0    1.6  1  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.1   9.1e-35   8.2e-31       1     205 [.     101     412 ..     101     414 .. 0.90

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 9.1e-35
                    EEEEES-BSS.TTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH..HHHTTTCES CS
                    xxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVp.eeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle..gleerekvd 92 
                    +l++++D++p +    + +  p+++t +dG+ +++G+d +++ +l++ ++l++l+d g +++g ++l+fqp+EE+   G+ +++e  gl   ++v 
     KIR65087.1 101 ALRADIDALPlT----DVKDvPYRST-KDGVCHACGHDVHTTVLLGVGMLLAQLADLG-ELDGRVRLIFQPAEEILPCGSLEVIEagGL---DDVV 187
                    69********33....35566*****.66****************************8.679************988********6443...4888 PP

                    EEEEEEEESSSBTCHSTETEEEE......................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxxx......................................................................... RF
  Peptidase_M20  93 avfelhieepgileagklaigvv......................................................................... 115
                     +f+lh+  p  ++ gk++ +v+                                                                         
     KIR65087.1 188 QIFALHCD-PNQPV-GKVGLRVGpitaaadnvtvrltgpgghtarphltvdlvdalgrlvtevpalvsrrvpansglllvfghasagtrynvipse 281
                    9999**66.****9.**999999************************************************************************* PP

                    ...................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSCEEEEEES.SSBHTHHHH.TTTEEEEE CS
                    ...................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxx RF
  Peptidase_M20 116 ...................................kvevelleggapvtlndsplvkalaeaaeelfgekvelivsg.pggtdarff.agiptvmi 174
                                                       +v++e + +g+p+++nd++ +++l +a+ +++g +   ++++ +gg+d++++ +++p ++ 
     KIR65087.1 282 atasgtlrvmdrntwdeapkivaqvvrdviaptgaTVDLE-YLRGRPPVTNDARAIQVLTAATHAALGPDGVAETPQsMGGEDFSWYlEHVPGALA 376
                    *********************************9779999.89999*******************99977444455569********888895533 PP

                    ...EE.SSG..GCTTSTTTEEEHHHHHHHHHHHHHHH CS
                    ...xx.xxx..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 175 ...fg.pgs..glaHspnEyvdledlekgikvlarll 205
                       +g   +   + H    +vd+++++ g++v+++++
     KIR65087.1 377 rlgVGrS-GpnVDLHRASFDVDERAIAVGVRVMVQTA 412
                    3235533.24599999*****************9987 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.5e-08   0.00022       9     104 ..     217     310 ..     213     315 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.5e-08
                 EEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSC CS
   M20_dimer   9 gkitvkgkagHsgapgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeileke 104
                 ++++ +g +gH + p+  ++ + +l rl++e +++ ++       ++  l +++ ++G+  nvip+ea+a+ ++R+ +  +++e+ + ++++++++
  KIR65087.1 217 VTVRLTGPGGHTARPHLTVDLVDALGRLVTEVPALVSRRV--PANSGLLLVFGHASAGTRYNVIPSEATASGTLRVMDRNTWDEAPKIVAQVVRDV 310
                 678899*****************************99966..777888999*********************************999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2812.00
//
Query:       KIR65088.1  [L=314]
Description: hypothetical protein TK50_06140 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-64  215.5   5.5      7e-64  215.2   5.5    1.1  1  DUF4349   Domain of unknown function (DUF4349)
  ------ inclusion threshold ------
       0.44   10.3   1.6        2.9    7.7   0.1    2.4  2  DivIC     Septum formation initiator
        0.8    9.3   0.0        0.8    9.3   0.0    3.0  3  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.2   5.5   1.2e-67     7e-64       1     212 [.      77     286 ..      77     287 .. 0.98

  Alignments for each domain:
  == domain 1  score: 215.2 bits;  conditional E-value: 1.2e-67
     DUF4349   1 rkliytasltlevedvdaavaairelveeagGyvesssersgtegdersasltlRvPaarldafldelaelgkvtsrstsaeDVTeqyvDleaRlkale 99 
                 r +iyt++++++v+dvdaa++++ ++v+  gG+v  ++ rs++++ +++a+l+lRvPa+r++a+l+ela lg+ ++r +++eDVTe+ vDl+aR+++++
  KIR65088.1  77 RSIIYTGTMRVRVDDVDAAARSAVTAVTGIGGFVGGDE-RSSGGTANARAELQLRVPAERFTAVLEELARLGRQEQRAIRTEDVTEETVDLDARIATQR 174
                 78************************************.9*********************************************************** PP

     DUF4349 100 asedrllallekaksvedlleiereLsevqaeieslegqlryLdnqvaystvtvtlrepeaeteaeeeegegflealsggwnalveflagllvvlgall 198
                 a +++ ++ll++a+s+ dl+++e+e+++++a++ sle++ r+L++ +a+st+t+tl  pea ++++e++ +gfl +l+ggw+a+v++l  ll+vlgall
  KIR65088.1 175 ARVESGRKLLARATSIGDLVTLESEVARREADLASLEAKKRRLADLTALSTITLTLVGPEADVRDPEPD-TGFLVGLRGGWTAFVASLGVLLTVLGALL 272
                 ****************************************************************99998.9**************************** PP

     DUF4349 199 Pwllvlalvlallv 212
                 P+++ +++ +a+lv
  KIR65088.1 273 PFAVAIGVPVAVLV 286
                 *******7777765 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.048   2.9e+02      19      42 ..     156     179 ..     150     189 .. 0.77
   2 ?    7.7   0.1   0.00049       2.9      15      45 ..     189     219 ..     183     225 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.048
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  19 ykqlkqeiaalqaelaklkaenee 42 
                   ++ +e ++l a +a+++a+ e+
  KIR65088.1 156 TEDVTEETVDLDARIATQRARVES 179
                 567888999999999999999876 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00049
                 XXXHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  15 gllaykqlkqeiaalqaelaklkaeneeLea 45 
                 ++ ++  l++e+a+ +a+la+l a++++L++
  KIR65088.1 189 SIGDLVTLESEVARREADLASLEAKKRRLAD 219
                 7889999********************9987 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00013       0.8      29      64 ..       6      41 ..       4      49 .. 0.87
   2 ?   -0.7   0.1      0.16   9.5e+02      65      95 ..     156     190 ..     136     206 .. 0.70
   3 ?    0.2   1.9     0.084     5e+02      14      32 ..     262     295 ..     250     303 .. 0.45

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00013
     DUF4131 29 rrrvllllllllllallgfalrapqpnandlsqlle 64
                rrr +++++l++lla++g+ +   + +a+d + +++
  KIR65088.1  6 RRRLWTAVGLVALLAVGGCSADGGSGGAEDSAAVAP 41
                89******************9999988888887776 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.16
     DUF4131  65 s....gqeviveGvvaslpeltgsgtrfvleverv 95 
                      +++v + +++a++  + +sg+++ ++++++
  KIR65088.1 156 TedvtEETVDLDARIATQRARVESGRKLLARATSI 190
                 23344677889999999999999999999888877 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.084
     DUF4131  14 lllllllllllrr...............rprrrv 32 
                 ++ll +l++ll +               r+rrr+
  KIR65088.1 262 GVLLTVLGALLPFavaigvpvavlvtvlRRRRRR 295
                 3333333333322244444555666664333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1926.75
//
Query:       KIR65089.1  [L=209]
Description: beta-lactamase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-17   63.6   0.1    2.3e-17   63.4   0.1    1.1  1  Lactamase_B_3  Beta-lactamase superfamily domain
    6.1e-10   39.0   1.8    1.2e-09   37.9   1.8    1.5  1  Lactamase_B_2  Beta-lactamase superfamily domain
    9.4e-05   22.5   9.5    0.00048   20.2   9.5    2.3  1  Lactamase_B    Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.1   3.8e-21   2.3e-17       1     159 [.       2     170 ..       2     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 3.8e-21
  Lactamase_B_3   1 eltwlghnsflletagarilvDPfkanlgyeppaeeaDlvlisqaledHahletlkql.....................aenvkvleegeslevgg 75 
                    +lt + h+++++e +g +++vDP+          + aD+vli+++++dH ++++l +                      ae  + +++g+s++++g
     KIR65089.1   2 QLTKYAHSCLRVEHDGGVLVVDPGV--FSDPGALDGADAVLITHEHPDHVDVAALTRQldrrplrihgpaslagvlgdaAEALEPVAPGQSFTAAG 95 
                    6999*******************98..55666679*****************999776688888988888888888888888888888******** PP

  Lactamase_B_3  76 leiravatshdavggs.ergenngflleqdgltiyhlGhlahelsseelkelgrvDvvltPvggpltlgqeealelakrLkpklv 159
                    + +ra  + h   ++  +   n g+ll++    +yh+G+           e  +vD +++P++ p +++  e+++ ++++ p+  
     KIR65089.1  96 VPVRAYGGRHAVIHPDiPVVDNLGYLLDD---VVYHPGDSLV------APEDVQVDTLFAPIHAP-WSKFSEVVDFIRAVAPRRA 170
                    **********99998879999******77...9******998......2333489**********.999***********99866 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   1.8   2.1e-13   1.2e-09      27     165 ..      32     149 ..      21     174 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 2.1e-13
                    -..SEEEEE-SS--HHHHGGGGCCCC.C--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-TTSEEEECSTTEEEEEEEE-EE--CTCCE- CS
  Lactamase_B_2  27 elppidaVllthaHyDHlaglltlre.lrpkklplyapkgvlavleanfvylaleeepavnvheldwgesfelgdggleitatparhksgrrldrn 121
                     l+  daVl+th+H DH+ ++  l + l  + l++++p++++ vl +           a++++++++g+sf+ +  g+ ++a   rh+     d  
     KIR65089.1  32 ALDGADAVLITHEHPDHV-DVAALTRqLDRRPLRIHGPASLAGVLGDA----------AEALEPVAPGQSFTAA--GVPVRAYGGRHAVIH-PDIP 113
                    47789*************.99999996544449************999..........457999*********9..788999999999998.8888 PP

                    TTTSEEEEEECTTEEEEEESS-S---HHHHHHHCT-SEEEEE-S CS
  Lactamase_B_2 122 agdtlGlriegggkrvyyigDtgyipeeigerlggadlllldit 165
                      d+lG++++     vy+ gD+   pe+++     +d l+ +i 
     KIR65089.1 114 VVDNLGYLLD---DVVYHPGDSLVAPEDVQ-----VDTLFAPIH 149
                    99********...58888888888887765.....777775543 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   9.5     8e-08   0.00048       6      58 ..       8      49 ..       3     176 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 8e-08
                 SEEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHH CS
  Lactamase_B  6 vnsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHi 58
                 +++  +e+dggv+++D+G+ ++ + +           +  dav++TH H+DH+
   KIR65089.1  8 HSCLRVEHDGGVLVVDPGVFSDPGAL-----------DGADAVLITHEHPDHV 49
                 78999********************7...........89*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1483.01
//
Query:       KIR65090.1  [L=368]
Description: hypothetical protein TK50_06150 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1479  (0.0824921); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 2384.27
//
Query:       KIR65091.1  [L=249]
Description: hypothetical protein TK50_06155 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1744.57
//
Query:       KIR65092.1  [L=320]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-09   36.4   0.0    4.9e-08   33.2   0.0    2.2  2  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.3e-08   34.2   0.1    7.4e-07   29.3   0.0    2.6  3  Acetyltransf_9   Acetyltransferase (GNAT) domain
    2.5e-07   31.0   0.0    6.1e-07   29.8   0.0    1.6  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00053   19.9   0.0     0.0011   18.9   0.0    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0014   18.6   0.0     0.0053   16.7   0.0    1.9  2  FR47             FR47-like protein
  ------ inclusion threshold ------
      0.027   14.2   0.0       0.05   13.3   0.0    1.5  1  PanZ             Acetyltransferase (GNAT) domain, PanZ


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.19   5.6e+02      59      96 ..      79     119 ..      27     132 .. 0.57
   2 !   33.2   0.0   1.7e-11   4.9e-08      21     108 ..     203     292 ..     181     302 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.19
                     TEEEEEEEEESGGGTTSSHHHHH......HHHHHHHHHHTTESE CS
  Acetyltransf_1  59 gvayieslaVspeyrgkGlGsaL......lealeerareegikk 96 
                        +  ++ V+pe+    ++ +       l+ ++era e+g+ +
      KIR65092.1  79 VGREFVDVLVDPEHG---AAVRApllarmLDRVAERAAERGLPA 119
                     455555666666662...22221111222555555666665555 PP

  == domain 2  score: 33.2 bits;  conditional E-value: 1.7e-11
                     HHHHHHH...HHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHH CS
  Acetyltransf_1  21 eeefees...fsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaa 108
                     ++ ++e      ++ ++++vae dge++G ++ + +   +++ ++++ l V p++r++G+G aLl+ +      +g +   l v+  n  +
      KIR65092.1 203 YDQWREHlpaYARTWDEWFVAEVDGEPAGALQSSDQAL-EQDMGWVRTLSVLPTHRRRGVGAALLRRAFAVYAAKGRRHAGLGVDLANPTS 292
                     22222222334445568*******************99.89***************************99888887755577777777655 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.8   5.3e+03       4      54 ..      11      68 ..       9      73 .. 0.48
   2 ?    1.6   0.0     0.094   2.8e+02      77     108 ..      84     118 ..      79     127 .. 0.81
   3 !   29.3   0.0   2.5e-10   7.4e-07       3     108 ..     174     279 ..     172     301 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.8
                    EE-GGGHHHHHHHHHHH..TT----H....HHH.HHHHHHHTT.SEEEEEEE.TTEEE CS
  Acetyltransf_9  4 elteedldevlellkya..Fqdeespl..eeir.eyfrkllee.srvlgaed.ngelv 54
                    + t +d++++l+++ +a  F   ++++  e+++ +   +++++  + +++ d +g+lv
      KIR65092.1 11 RPTLDDVPAILAVVHAAdtFSIGHPDFdaEDVKaALTAPYFDPaRDSWLVSDpQGRLV 68
                    5666777777766654422555555554322220223333333235555555566666 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.094
                     EEEEE-CCGTT...S-HHHHHHHHHHHHHHHTT-- CS
  Acetyltransf_9  77 tgVavapehrg...rgvlskLlaraleemreegqp 108
                     ++V v+peh       +l ++l+r+ e+++e+g p
      KIR65092.1  84 VDVLVDPEHGAavrAPLLARMLDRVAERAAERGLP 118
                     67888888865444888999999999999999977 PP

  == domain 3  score: 29.3 bits;  conditional E-value: 2.5e-10
                     EEE-GGGHHHHHHHHHHHTT----H.....HHHHHHHHHHTT..SEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHH CS
  Acetyltransf_9   3 relteedldevlellkyaFqdeespl...eeireyfrkllee..srvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvls 92 
                     r  +e+dl  ++++++++F d++++    ++++++  + + +  ++ ++ae +ge +g l+  ++ l       ++++v   +v p+hr+rgv  
      KIR65092.1 174 RAGDEADLRLFHRIFDTSFRDTPDYEpvgYDQWREHLPAYARtwDEWFVAEVDGEPAGALQSSDQALE-----QDMGWVRTLSVLPTHRRRGVGA 263
                     778899******************998864455555566665356999****************9995.....68******************** PP

                     HHHHHHHHHHHHTT-- CS
  Acetyltransf_9  93 kLlaraleemreegqp 108
                     +Ll+ra++ ++++g +
      KIR65092.1 264 ALLRRAFAVYAAKGRR 279
                     ***********99876 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       5.6   1.7e+04      27      36 ..      83      92 ..      70      92 .. 0.61
   2 !   29.8   0.0     2e-10   6.1e-07       4      73 ..     219     301 ..     216     304 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.6
                    TEEEEE-GGG CS
  Acetyltransf_7 27 itrlaVdpey 36
                       + Vdpe+
      KIR65092.1 83 FVDVLVDPEH 92
                    2337777776 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 2e-10
                     EEEEEEETTEEEEEEEEEEES.....TCTEE...EEE-GGGTTSSHHHHHHH.H.........TTSEEEEEEEEETHH.HHHHHHHHTT CS
  Acetyltransf_7   4 evfVaeddgkivGfialslld.....aeitr...laVdpeyrgkGiGraLle.a.........aekgiileqlelnae.kaikfYeklG 73 
                     e fVae dg++ G +  s ++     +   +   l V+p +r++G+G aLl+ a         ++ g+    + l+++   + +Y++ G
      KIR65092.1 219 EWFVAEVDGEPAGALQSSDQAleqdmG---WvrtLSVLPTHRRRGVGAALLRrAfavyaakgrRHAGL---GVDLANPtSPATLYRSVG 301
                     689**********66544444875533...2456*****************96346654332211221...234533335578999988 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   3.6e-07    0.0011       9      92 ..     202     286 ..     189     310 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3.6e-07
  Acetyltransf_10   9 gietfkefispealreri.e..egealllvaeeggkivGvi.....el.rdgshisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvn 92 
                      g+         +++re++ +    +   +vae++g+++G++     +l +d + +  l V p +r++G+g+aLl ++ + +  +g ++  l v+
       KIR65092.1 202 GY---------DQWREHLpAyaRTWDEWFVAEVDGEPAGALqssdqALeQDMGWVRTLSVLPTHRRRGVGAALLRRAFAVYAAKGRRHaGLGVD 286
                      33.........444444432336677789************655555544444**********************9988865555555555555 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.1   3.3e+03       9      24 ..      64      79 ..      59     119 .. 0.61
   2 !   16.7   0.0   1.8e-06    0.0053      16      80 ..     239     305 ..     232     311 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.1
                T--EEEEEEE-TTSSE CS
        FR47  9 lgelaawilrkdggel 24
                 g+l+aw l  + + +
  KIR65092.1 64 QGRLVAWSLVDNPTGV 79
                5778888765444333 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.8e-06
                 EEE-TTSSEEEEEE-GGG-SSSHHHHHHH.HHHHHHHHS-S-EEEEEETT-HHH.HHHHHHHT-EEE CS
        FR47  16 ilrkdggelgalqvlpehrrrGlgsrlvk.alakeiaergktvllvvvasNtps.irlyeklGfeki 80 
                  l++d+g +  l vlp+hrrrG g  l + a a   a+   ++ l v  +N +s   ly ++G +++
  KIR65092.1 239 ALEQDMGWVRTLSVLPTHRRRGVGAALLRrAFAVYAAKGRRHAGLGVDLANPTSpATLYRSVGLREL 305
                 678999******************9887614555555555678888999998773579999998876 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.7e-05      0.05      56      86 ..     239     269 ..     168     275 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.7e-05
        PanZ  56 eledkeaelsdlcVRevTRrRGVgsyLleea 86 
                  le+++++++ l V    RrRGVg  Ll +a
  KIR65092.1 239 ALEQDMGWVRTLSVLPTHRRRGVGAALLRRA 269
                 468899*********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2439.02
//
Query:       KIR65093.1  [L=151]
Description: gamma-glutamyl cyclotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-21   75.1   0.1    5.4e-21   74.8   0.1    1.1  1  AIG2_2    AIG2-like family
    1.2e-10   42.0   0.1    1.5e-10   41.7   0.1    1.1  1  GGACT     Gamma-glutamyl cyclotransferase, AIG2-like


Domain annotation for each model (and alignments):
>> AIG2_2  AIG2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.1     6e-25   5.4e-21       1      83 []      60     141 ..      60     141 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 6e-25
      AIG2_2   1 eVfGvlweidlenlkdLDkqEgvedgiyrpievrVstatgeevlaraYvlsnqpetkPsetYlkvlvkGAeesglPedYvkrL 83 
                 +Vf++l++i + +  +LD+ Egv  g yr+++vrVst +g +v+a++Yv + ++ + P+++Yl+ ++++Ae++g+P+dYv++L
  KIR65093.1  60 RVFVALYDIHPYDAAQLDEIEGVTSGTYRKLHVRVSTLDG-DVTAWVYVFDGYEGGLPTAWYLSEIANAAEKAGAPDDYVSEL 141
                 69***********************************888.89*************************************987 PP

>> GGACT  Gamma-glutamyl cyclotransferase, AIG2-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.1   1.7e-14   1.5e-10       3     105 ..       6     110 ..       4     123 .. 0.80

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1.7e-14
                 ESSTTSTTSCCCHHHHCSECEEEEEEEECCTBEEEE........ETTTEEEETTSSE.EEEEEEEE-HHHHHHHHHCT.TTTTSEEEEEEEEEC.TTS- CS
       GGACT   3 vYGtLkrgepnhqrlllgarflesgpatlkgyrlyd.......lggkypalvpgdgekVkGelyevddeelarLDelEpeepseYereevkvevledge 94 
                 +YG+    +p  +r  +  + + +g  +l+g+rl         ++g +  +v+++g +V   ly++ + + a+LDe+E+ + + Y++ +v+v++  dg+
  KIR65093.1   6 AYGSNL--DPARMRAYCP-HSPMVGVGWLEGWRLTFagegvigWEGAVSTVVESPGDRVFVALYDIHPYDAAQLDEIEGVTSGTYRKLHVRVST-LDGD 100
                 7*****..8888888878.99999999*******975333334444556666**************************8899******777755.4666 PP

                 EEEEEEEEETT CS
       GGACT  95 qveawvYvyag 105
                  + awvYv++g
  KIR65093.1 101 VT-AWVYVFDG 110
                 55.******66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1025.27
//
Query:       KIR65094.1  [L=467]
Description: flavoprotein disulfide reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-57  193.1   6.8    7.9e-57  192.7   6.8    1.1  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.7e-23   83.0   0.2    6.2e-23   81.2   0.0    2.1  2  Pyr_redox_dim   Pyridine nucleotide-disulphide oxidoreductase
    3.5e-22   78.8   4.3    8.5e-16   58.3   0.1    2.7  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    2.9e-15   56.3   0.0    2.5e-09   36.8   0.0    2.1  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    6.1e-11   42.0   5.2    1.2e-06   27.9   0.7    3.4  3  GIDA            Glucose inhibited division protein A
    2.5e-07   29.8   2.6    0.00073   18.4   1.9    2.5  2  HI0933_like     HI0933-like protein
    5.2e-07   29.1  13.6    0.00081   18.6   4.0    3.5  3  FAD_binding_2   FAD binding domain
    5.2e-07   29.0   5.9    7.9e-06   25.2   0.5    3.1  3  Lycopene_cycl   Lycopene cyclase protein
    1.3e-06   27.9   2.3    0.00028   20.3   0.5    2.6  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
    3.5e-05   23.5  21.3       0.12   12.0   0.2    4.4  4  DAO             FAD dependent oxidoreductase
    0.00013   21.5   6.1    0.00013   21.5   6.1    2.5  3  FAD_oxidored    FAD dependent oxidoreductase
    0.00013   21.2   0.9    0.00025   20.3   0.0    1.9  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
    0.00028   21.1   3.3      0.077   13.2   0.6    2.5  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00083   19.8   2.8       0.15   12.5   0.4    3.0  2  NAD_binding_7   Putative NAD(P)-binding
     0.0019   17.1   0.4     0.0019   17.1   0.4    1.7  2  Trp_halogenase  Tryptophan halogenase
     0.0032   18.0   1.7        1.7    9.2   0.3    2.7  2  XdhC_C          XdhC Rossmann domain
     0.0064   16.4   4.6      0.065   13.1   0.1    2.4  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
  ------ inclusion threshold ------
      0.017   14.3   5.2       0.36   10.0   0.8    2.7  3  FAD_binding_3   FAD binding domain
      0.042   13.1   1.1      0.073   12.3   0.5    1.9  2  Thi4            Thi4 family
       0.16   11.7   3.3       0.86    9.4   0.1    2.6  3  DFP             DNA / pantothenate metabolism flavoprotein
       0.37   11.0   2.4         36    4.7   0.2    3.3  3  TrkA_N          TrkA-N domain
        1.2    9.1  11.3        2.4    8.1   0.1    3.4  4  NAD_binding_9   FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.7   6.8   9.7e-60   7.9e-57       2     294 .]       3     329 ..       2     329 .. 0.94

  Alignments for each domain:
  == domain 1  score: 192.7 bits;  conditional E-value: 9.7e-60
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH....................................HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx....................................xxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias....................................evv 60 
                  ++v+iGgGpAG++aal +aq  a+vt+ve   ++g+c++ +c++sk++ +++e     +                                     + 
   KIR65094.1   3 QIVIIGGGPAGYEAALVAAQLDADVTVVEaegAGGACVLSDCVPSKTFIASSEVVTGYRdteefgvhsdgleavtvdartvhervkrlalaqsadIHA 100
                  79**************************9889********************99998889999*******************************8555 PP

                  HCHHHHCCCCHCCTCEEEE.ESC.EEEEETEEECTCEEEEEESEEEE---EEE-BC..TCT.TC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHH CS
                  xxxxxxxxxxxxxxxxxxx.xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  61 kklnqgielllgeevvkid.pgk.kkvklekkkegdeekiaydklvlAtGssprdl..gip.GvaenvgklvrtldsaealklkllpkrivvvGgGyi 153
                  k +++g+++++g+  ++ d  g+ ++v+++  +++ +++i++ ++++AtG++pr l   +p G+        r+l+  + + l +lp++++vvG+G++
   KIR65094.1 101 KLVKAGVTFVAGTARLGEDmLGHtHRVVVTPADGSGKHTIDASTVLVATGATPRQLptAVPdGE--------RILTWRQVYDLPELPEHLIVVGSGVT 190
                  667789******88887776566689999999989999******************33333444........899999******************** PP

                  HHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCS.HCCT- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
  Pyr_redox_2 154 GvElAaalaklgkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelle.eklgl 250
                  G E+A+a+  +g+ vtlv  rdr+++  d ++++a+e++++ +G ++  +++++ +++  + +ev+l dg+ ++ +  ++avG  p+t++l+  + g+
   KIR65094.1 191 GAEFASAYLAMGVPVTLVSSRDRVMPHEDADAAMAIERVFRSRGMTILNNSRAEGVRRTADGVEVELADGRLVQGSHALIAVGSIPNTAGLGlAEYGV 288
                  ************************************************************************************************** PP

                  EEEETTEEE--TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 251 elderggivvdeflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  el ++g++ vd+ +rtnvpgiya+GD++   g++ la +A +qG
   KIR65094.1 289 ELARGGYVTVDRVSRTNVPGIYAAGDCT---GVLPLASVAAMQG 329
                  ****************************...**********998 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       9.9   8.1e+03      72      92 ..      83     103 ..      73     120 .. 0.65
   2 !   81.2   0.0   7.5e-26   6.2e-23       2     109 ..     350     457 ..     349     458 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 9.9
                    HHHHHHHHHHHHHTTSBHHHH CS
  Pyr_redox_dim  72 ageliqelavaikagltvedl 92 
                    ++e+++ la+a +a++ ++++
     KIR65094.1  83 VHERVKRLALAQSADIHAKLV 103
                    556666666666665555543 PP

  == domain 2  score: 81.2 bits;  conditional E-value: 7.5e-26
                    EEEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHTSBS CS
  Pyr_redox_dim   2 ptvvftdpevasvGlteeeAkaagieikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedladtih 97 
                    ++ vftdpe+a+vG++++e+ a + + + + +p++ n+ra++++ ++gfvKl ++  +g+v+G  +v+p+a+eli  +++a++++ltv++la+ti 
     KIR65094.1 350 AANVFTDPELATVGVSQDEVDAGRTPARQVMLPLSGNARAKMDDLADGFVKLFCRPASGQVIGGVVVAPKASELILPITMAVENNLTVNELAQTIT 445
                    6779******************************************************************************************** PP

                    SSSSTGGGGHCH CS
  Pyr_redox_dim  98 ihPtlsealkea 109
                    i+P+ls +++ea
     KIR65094.1 446 IYPSLSGSITEA 457
                    *******99998 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   1.0   5.3e-07   0.00044       2      31 ..       4      33 ..       3      36 .. 0.94
   2 !   58.3   0.1     1e-18   8.5e-16       1      80 [.     181     259 ..     181     260 .. 0.96

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.3e-07
                EEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvvers 31
                +v++GgG  g E+A ++a+l ++Vtvve++
  KIR65094.1  4 IVIIGGGPAGYEAALVAAQLDADVTVVEAE 33
                8**************************976 PP

  == domain 2  score: 58.3 bits;  conditional E-value: 1e-18
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEEET CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgvesvklkd 80 
                 +++vvG+G++g E+A+a+ ++g  Vt+v  +d++++ +D++a+ ++++ ++ +g+++l n+++e ++ ++dgve v+l+d
  KIR65094.1 181 HLIVVGSGVTGAEFASAYLAMGVPVTLVSSRDRVMPHEDADAAMAIERVFRSRGMTILNNSRAEGVRRTADGVE-VELAD 259
                 789********************************************************************976.87765 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.2e-06    0.0018       1      54 [.       5      59 ..       5     101 .. 0.73
   2 !   36.8   0.0   3.1e-12   2.5e-09     120     305 .]     137     313 ..     126     313 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.2e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnigns..iyrypkemtfispsftsek 54
                 +IiG+GPaG +aa+ + +++  d++++E + +g +  +++   ++tfi +s+  ++
   KIR65094.1  5 VIIGGGPAGYEAALVAAQLDA-DVTVVEAEGAGGAcvLSDCVPSKTFIASSEVVTG 59
                 7*******************9.8*****9855543124556666666666655555 PP

  == domain 2  score: 36.8 bits;  conditional E-value: 3.1e-12
  Pyr_redox_3 120 ketyeAkkviiAtGefdkPnklnipGeek.lvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdien 216
                  k+t+ A++v++AtG    P++l    ++       ++v ++ +   ++++V+G + ++++ A    ++g  Vt+v +++ +  +e        +d   
   KIR65094.1 137 KHTIDASTVLVATGA--TPRQLPTAVPDGeRILTWRQVYDL-PELPEHLIVVGSGVTGAEFASAYLAMGVPVTLVSSRDRVMPHE-------DADAAM 224
                  789***********9..899888877774144556677777.455899****************************999776665.......566777 PP

  Pyr_redox_3 217 rleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsf..lkkslfeldedgrpvlteeteetnvpglflaG 305
                   +e++ +++ +++l n++++ ++++   ++v+ +dg+ v+ ++  ++a+G  p++    l++ ++el++ g+++++     tnvpg++ aG
   KIR65094.1 225 AIERVFRSRGMTILNNSRAEGVRRTADGVEVELADGRLVQGSHA-LIAVGSIPNTAGlgLAEYGVELARGGYVTVDR-VSRTNVPGIYAAG 313
                  7888888877**************************99887665.88999999987624566999998889888875.678********99 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.7   1.5e-09   1.2e-06       1      55 [.       3      59 ..       3      97 .. 0.87
   2 !   11.6   0.1   0.00013       0.1       2      38 ..     182     224 ..     181     267 .. 0.79
   3 ?    3.0   0.0     0.053        43     353     382 ..     304     334 ..     296     341 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.5e-09
                CEEEE-SSHHHHHHHHHHHHTT--EEEE..ES-GGGTT--SSSSEEE-TTHHHHHHH CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi..thkldtiaelsCnpsiggiakgllvrE 55
                ++++iGgG AG+eAAl aa+l a+v+ +      + ++   C ps   ia++++v+ 
  KIR65094.1  3 QIVIIGGGPAGYEAALVAAQLDADVTVVeaEGAGGACVLSDCVPSKTFIASSEVVTG 59
                589*************************7666677888889********99999875 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00013
                 EEEE-SSHHHHHHHHHHHHTT--EEEE......ES-GGGTT-- CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLi......thkldtiael 38 
                 +iV+G G  G e A a   +G++v+L+       ++ d  a +
  KIR65094.1 182 LIVVGSGVTGAEFASAYLAMGVPVTLVssrdrvMPHEDADAAM 224
                 69************************97766665555554555 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.053
                 SSSBTEEE-CGGGTB-SHHHHHH.HHHHHHH CS
        GIDA 353 kkvkgLflAGqinGteGYeEaaa.qGllAGi 382
                  +v+g+++AG+ +G+      aa qG +A  
  KIR65094.1 304 TNVPGIYAAGDCTGVLPLASVAAmQGRIAMW 334
                 579***********97444433368887755 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.9   8.9e-07   0.00073       2      35 ..       3      36 ..       2      42 .. 0.90
   2 !    9.6   0.0    0.0004      0.33      96     196 ..     209     307 ..     182     314 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.9e-07
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakkl 35
                 ++++iGgG+AG  aA+ aa+ +++V+++e++ + 
   KIR65094.1  3 QIVIIGGGPAGYEAALVAAQLDADVTVVEAEGAG 36
                 79***************************98665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0004
                  -STTEEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----S.S-GGGT--SHHHHHHHHTT--EEEEEE CS
  HI0933_like  96 edsgrlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGl.SiPklGstgkgyklaeqfghtivplrp 192
                   +++r+ p + +a d   a+++  +++g+++  +++ ++v++++dg ++v++ +++ ++ ++ ++A+G+    + lG  + g++la+   +t+  ++ 
   KIR65094.1 209 SSRDRVMPHE-DA-DAAMAIERVFRSRGMTILNNSRAEGVRRTADG-VEVELADGRLVQGSHALIAVGSIpNTAGLGLAEYGVELARGGYVTVDRVSR 303
                  5667888877.33.445577888999****************9999.*******************99752466789999999999988888887777 PP

                  ES-- CS
  HI0933_like 193 alvp 196
                  ++vp
   KIR65094.1 304 TNVP 307
                  7776 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   4.0   9.9e-07   0.00081       2      41 ..       4      42 ..       3      45 .. 0.91
   2 !    9.9   0.2   0.00044      0.36     173     237 ..     123     201 ..      58     211 .. 0.79
   3 !    5.6   0.1    0.0088       7.2     376     403 ..     296     317 ..     288     325 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.9e-07
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG- CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggataws 41
                   +++iG+G AG+ AAl aa+  ++v+vve e++ gga + s
     KIR65094.1  4 IVIIGGGPAGYEAALVAAQLDADVTVVEAEGA-GGACVLS 42
                   79****************************98.7777666 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00044
                    EEEEEEEEETTTTCEEEEEESEEEE-----GG........................GSSSBSSGTT-S-HHHHHHHCTT CS
  FAD_binding_2 173 rvtGavvenpesgrevrirakavvlatgGfgr.............allkel.lgaaaeaettnapavtGdglalalrag 237
                    + + +vv++ +++++++i a  v++atg+ +r             ++ + + l++++e+ ++   +vtG   a+a+ a 
     KIR65094.1 123 HTHRVVVTPADGSGKHTIDASTVLVATGATPRqlptavpdgerilTWRQVYdLPELPEHLIVVGSGVTGAEFASAYLAM 201
                    6677999999**********************9******9999995655543688999999999999999999998875 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0088
                    EEBETTSBESTTEEESSBTEEE-STCEE CS
  FAD_binding_2 376 vetdengrvldadgqpipGLYAaGevaa 403
                    v++d  +r+      ++pG YAaG +++
     KIR65094.1 296 VTVDRVSRT------NVPGIYAAGDCTG 317
                    567777777......***********94 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.5   9.7e-09   7.9e-06       2     143 ..       4     153 ..       3     168 .. 0.75
   2 ?    0.5   0.1      0.31   2.5e+02       2      36 ..     182     214 ..     181     220 .. 0.82
   3 ?    4.5   0.1     0.019        15     102     163 ..     236     299 ..     219     302 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 9.7e-09
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvliea..spsllfpnnyvWsdefedlgaleecvehs.Wsgtivylddgkkillg..raYgrvsskrlke. 91 
                    +v+iG+GpAg   A     a+ +  v+++ea  + +     + v s  f + +  e + +++  ++  v+ d+ + ++++     +rv++  l++ 
     KIR65094.1   4 IVIIGGGPAGYEAALVA--AQLDADVTVVEAegAGGACVLSDCVPSKTFIASS--EVVTGYRdTEEFGVHSDGLEAVTVDarTVHERVKRLALAQs 95 
                    89*********998877..5566666666541155555566667676666666..4444544146789***********9866799******9852 PP

  Lycopene_cycl  92 .ellerlvengvklleakvesveeeea.geslvvleggr....kirarlvvdarglas 143
                      ++ +lv++gv+++ +++   e+    ++++vv++++     +i+a++v++a+g+  
     KIR65094.1  96 aDIHAKLVKAGVTFVAGTARLGEDMLGhTHRVVVTPADGsgkhTIDASTVLVATGATP 153
                    269***************9887777667788888865544778************544 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.31
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsl 36 
                    ++v+G+G  g   A      ++g+ v+l+ + + +
     KIR65094.1 182 LIVVGSGVTGAEFASAY--LAMGVPVTLVSSRDRV 214
                    79************999..8999999999554444 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.019
  Lycopene_cycl 102 vklleakvesveeeeageslvvleggrkirarlvvdarglaslk...karrlglQtfyGvevevd 163
                     +l ++++e v+   +  + v l++gr ++++ ++ a g   ++   +  + g+  ++G  v vd
     KIR65094.1 236 TILNNSRAEGVRRTAD-GVEVELADGRLVQGSHALIAVGSIPNTaglGLAEYGVELARGGYVTVD 299
                    567899*****99999.899**************9999944333555666778888888877776 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.5   3.4e-07   0.00028      30      60 ..       3      33 ..       1      95 [. 0.90
   2 !    6.7   0.1    0.0047       3.9      30      65 ..     181     216 ..     176     254 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.4e-07
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESS CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvr 60
                 ++++iGgG aG +A+ +a++l+a+Vtv++ +
   KIR65094.1  3 QIVIIGGGPAGYEAALVAAQLDADVTVVEAE 33
                 79*************************9976 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0047
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHH CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparle 65 
                  + +v+G Gv G + +++  ++g  Vt++  r +++ 
   KIR65094.1 181 HLIVVGSGVTGAEFASAYLAMGVPVTLVSSRDRVMP 216
                  689***********************9998887764 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   5.1   0.00029      0.24       2      36 ..       4      38 ..       3      41 .. 0.92
   2 !    6.4   0.2    0.0073       5.9     152     207 ..      98     156 ..      59     174 .. 0.77
   3 ?    4.5   0.3     0.026        22       1      30 [.     181     212 ..     181     218 .. 0.83
   4 !   12.0   0.2   0.00014      0.12     146     234 ..     220     305 ..     216     414 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00029
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSG CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgdiagsga 36
                +viiGGG +G  +A+ +a+    Vt++e++  ag ga
  KIR65094.1  4 IVIIGGGPAGYEAALVAAQLDadVTVVEAE-GAG-GA 38
                9****************998789******9.888.65 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0073
                 HHHHHHHTT-EEEESECEEEEEEEE..TCEEEEEEECT.EEE.EEEEE..EEE--GGGHHHH CS
         DAO 152 laraaealGveilegtevtgleeed..gkvwgverttp.gen.daada..vVnaaGawsdll 207
                 + +++ ++Gv+++ gt   g    d  g  ++v +t + g+  +++da  v +a+Ga  ++l
  KIR65094.1  98 IHAKLVKAGVTFVAGTARLGE---DmlGHTHRVVVTPAdGSGkHTIDAstVLVATGATPRQL 156
                 56778999*******777775...33345555545555676667888899******986665 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.026
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSS CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgd 30 
                 +++++G+G++G+  A +  + g  Vtl+ ++d
  KIR65094.1 181 HLIVVGSGVTGAEFASAYLAMGvpVTLVSSRD 212
                 679*********887777667888**999886 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE......EECTEEE.E......EEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECC CS
         DAO 146 akltaalaraaealGveilegtevtgleeedgkvwgve......rttpgen.d......aadavVnaaGawsdllgllkeldlpispvrgqvlvlkpls 231
                 a ++ a+ r ++++G +il++++++g++++   + gve      r       +      a+  + n+aG++   l    e    ++ +rg +++++++s
  KIR65094.1 220 ADAAMAIERVFRSRGMTILNNSRAEGVRRT---ADGVEveladgR-----LvQgshaliAVGSIPNTAGLG---L---AEY--GVELARGGYVTVDRVS 302
                 5677889999*****************886...455554254442.....322222233444477777777...3...334..7799999999998887 PP

                 THS CS
         DAO 232 ekl 234
                 ++ 
  KIR65094.1 303 RTN 305
                 733 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   6.1   1.6e-07   0.00013       2     144 ..       4     150 ..       3     152 .. 0.60
   2 ?    1.6   0.5      0.17   1.4e+02       2      33 ..     182     213 ..     181     214 .. 0.93
   3 ?   -1.0   0.0         1   8.3e+02      83     125 ..     216     255 ..     193     266 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.6e-07
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaeeqvvtgiareflerlrq..rggarlkkrskwntfepevakavleem 96 
                   +v++GGgpaG+ AA+ Aa+ +a v +ve +g  G  + s  v +  ++ a+++vvtg  +     ++    ++    +    +t++ +v + +l + 
    KIR65094.1   4 IVIIGGGPAGYEAALVAAQLDADVTVVEAEGAGGACVLSDCV-PSKTFIASSEVVTGYRDTEEFGVHSdgLEAVTVDA----RTVHERVKRLALAQS 95 
                   9****************************9975544444444.44444445578888654333333221122221111....122222222222222 PP

  FAD_oxidored  97 l......aeagvtvllntrlvevekegkriesvtveske.grktirAkvfiDATg 144
                           +agvt + +t   + ++ g++ + v++  +  g++ti A+ ++ ATg
    KIR65094.1  96 AdihaklVKAGVTFVAGTARLGEDMLGHTHRVVVTPADGsGKHTIDASTVLVATG 150
                   2233444566999999999999998885555555555555688888888888876 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.17
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergv 33 
                   ++VvG+g+ G   A a   +G  v Lv+ r++
    KIR65094.1 182 LIVVGSGVTGAEFASAYLAMGVPVTLVSSRDR 213
                   69*************************99875 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1
  FAD_oxidored  83 tfepevakavleemlaeagvtvllntrlvevekegkriesvtv 125
                   ++e   a+ ++e + +  g+t+l n+r+++v+++    ++v+v
    KIR65094.1 216 PHEDADAAMAIERVFRSRGMTILNNSRAEGVRRTA---DGVEV 255
                   677777888899999999************99973...44444 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.3       1.9   1.6e+03     193     212 ..       3      22 ..       2      32 .. 0.71
   2 !   20.3   0.0     3e-07   0.00025     135     238 ..     127     224 ..     107     261 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.9
  K_oxygenase 193 riaVvGsGqSaaeifedllr 212
                  +i+++G+G  + e +  +++
   KIR65094.1   3 QIVIIGGGPAGYEAALVAAQ 22 
                  69999999988887665554 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 3e-07
  K_oxygenase 135 veskdaege.eeelearnlvlgvG.tepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrsealep 230
                  v ++ a+g+ ++++ a ++++++G t +++P+++ +    er++   ++       + +++++VvGsG ++ae +   l+      ++lv++++++ p
   KIR65094.1 127 VVVTPADGSgKHTIDASTVLVATGaTPRQLPTAVPD---GERILTWRQVYDLP---ELPEHLIVVGSGVTGAEFASAYLAMGV--PVTLVSSRDRVMP 216
                  444444444157999*********555689*99996...36788777766554...68999*************999998754..8************ PP

  K_oxygenase 231 lddspfvn 238
                   +d++ + 
   KIR65094.1 217 HEDADAAM 224
                  **998764 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.6   9.4e-05     0.077       1      34 [.       6      39 ..       6      59 .. 0.86
   2 !    7.8   0.1    0.0048       3.9       1      30 [.     184     213 ..     184     215 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.4e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGr 34
                   I+G+G +G  aA  +a+ ++dv+++e+    G +
     KIR65094.1  6 IIGGGPAGYEAALVAAQLDADVTVVEAEGAGGAC 39
                   9*************************97444444 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0048
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdr 30 
                    +vG+G++G+ +A+++   g+ v+l+ +rdr
     KIR65094.1 184 VVGSGVTGAEFASAYLAMGVPVTLVSSRDR 213
                    8*************9999******999998 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.4   0.00018      0.15       9      41 ..       3      39 ..       1     144 [. 0.68
   2 ?    6.2   0.0     0.017        14       8      40 ..     180     212 ..     179     277 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00018
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvapev....k 41
                   +++++GgG+ +++ +   ++ +a+vtvv  e     +
     KIR65094.1  3 QIVIIGGGPAGYEAALVAAQLDADVTVVEAEGaggaC 39
                   689************************9887544441 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.017
  NAD_binding_7   8 kkvlvvGgGevAarkvrklleagakvtvvapev 40 
                    ++ +vvG G  +a+ ++  l+ g  vt+v+ + 
     KIR65094.1 180 EHLIVVGSGVTGAEFASAYLAMGVPVTLVSSRD 212
                    5889*************************9985 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.4   2.4e-06    0.0019       1      37 [.       3      36 ..       3      50 .. 0.82
   2 ?   -3.7   0.2         5   4.1e+03       3      33 ..     183     210 ..     182     212 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.4e-06
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeig 37
                    +ivi+GGG+aG+ aA ++a +l  +++vt+ve+e  g
      KIR65094.1  3 QIVIIGGGPAGYEAA-LVAAQL--DADVTVVEAEGAG 36
                    69**********877.566677..58******99766 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5
                     EEE--SHHHHHHHHHHHHHTTTSSEEEEEE- CS
  Trp_halogenase   3 vivGGGtaGwlaAaalakalkgklevtlves 33 
                     ++vG G  G   A+a   ++   + vtlv s
      KIR65094.1 183 IVVGSGVTGAEFASAYLAMG---VPVTLVSS 210
                     78999998875555443333...57888876 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.3    0.0021       1.7       2      31 ..       5      34 ..       4     130 .. 0.87
   2 !    7.6   0.0    0.0065       5.3       1      40 [.     182     221 ..     182     270 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0021
                EEE--STTHHHHHHHHHHHTEEEEEEES-G CS
      XdhC_C  2 vifGaghvaqalarlaaalgfrvtvvdpre 31
                vi+G+g+ + + a +aa+l+ +vtvv+++ 
  KIR65094.1  5 VIIGGGPAGYEAALVAAQLDADVTVVEAEG 34
                8*************************9876 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0065
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-T CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefatkerfp 40 
                 l+++G g  +++ a+   a+g+ vt+v +r+++  +e++ 
  KIR65094.1 182 LIVVGSGVTGAEFASAYLAMGVPVTLVSSRDRVMPHEDAD 221
                 79****************************9866444443 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.1     0.042        34       2      31 ..       4      33 ..       3      45 .. 0.92
   2 !   13.1   0.1   7.9e-05     0.065       3      56 ..     183     236 ..     181     263 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.042
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S- CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdis 31
                + +iG G  G + a v+a+ + +V++v+ +
  KIR65094.1  4 IVIIGGGPAGYEAALVAAQLDADVTVVEAE 33
                88************************9975 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 7.9e-05
                 EEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS- CS
     3HCDH_N   3 aviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklk 56 
                  v+G+G+ Ga+ a++ ++ g++V+lv  +++ + +  + ++  +e++ +++ ++
  KIR65094.1 183 IVVGSGVTGAEFASAYLAMGVPVTLVSSRDRVMPHEDADAAMAIERVFRSRGMT 236
                 69**************************99999988888888888877766665 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.8   0.00044      0.36       3      32 ..       3      32 ..       1      36 [. 0.91
   2 ?    5.3   0.1     0.012       9.7       5      42 ..     183     220 ..     180     245 .. 0.86
   3 ?   -2.0   0.0         2   1.6e+03     116     145 ..     231     260 ..     214     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00044
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   +++I+G+GpaG  +al+ ++   +v++ve 
     KIR65094.1  3 QIVIIGGGPAGYEAALVAAQLDADVTVVEA 32
                   789*****************9999*99996 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.012
                    EEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS- CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpra 42 
                    ++VG+G +G+  a+     Gv v+lv  r++ +++  a
     KIR65094.1 183 IVVGSGVTGAEFASAYLAMGVPVTLVSSRDRVMPHEDA 220
                    79*********99999999********99988877655 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2
                    HHHTEEETCSEEEECCEECCCCCCCEEEEC CS
  FAD_binding_3 116 eerglqvrfktevesleqdeegvtaevrdk 145
                    ++rg+++  + + e+++++ +gv+ e+ d 
     KIR65094.1 231 RSRGMTILNNSRAEGVRRTADGVEVELADG 260
                    578999999*************99998775 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   8.9e-05     0.073      18      54 ..       2      37 ..       1     150 [. 0.85
   2 ?   -3.0   0.0       4.1   3.3e+03      19      33 ..     181     195 ..     166     207 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.9e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS-- CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspG 54
                s +vi+G+G++G  aa + a+  d  v+++e++ + G
  KIR65094.1  2 SQIVIIGGGPAGYEAALVAAQL-DADVTVVEAEGAGG 37
                689*************999998.99******986543 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.1
                 EEEEE--SHHHHHHH CS
        Thi4  19 DvvivGaGssGLtaa 33 
                  +++vG+G +G   a
  KIR65094.1 181 HLIVVGSGVTGAEFA 195
                 478999999996533 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.16   1.3e+02      29      52 ..      10      33 ..       8      58 .. 0.88
   2 ?   -3.5   0.0       9.5   7.7e+03      43      52 ..     104     113 ..      83     129 .. 0.53
   3 ?    9.4   0.1    0.0011      0.86      28      57 ..     187     216 ..     184     244 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.16
                -HHHHHHHHHHHHTT-EEEEEE-S CS
         DFP 29 GkmGyalAeaaaarGaeVtlvsgp 52
                G  Gy+ A  aa+  a+Vt+v ++
  KIR65094.1 10 GPAGYEAALVAAQLDADVTVVEAE 33
                778******************986 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 9.5
                 T-EEEEEE-S CS
         DFP  43 GaeVtlvsgp 52 
                  a Vt+v+g 
  KIR65094.1 104 KAGVTFVAGT 113
                 2334444444 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0011
                 --HHHHHHHHHHHHTT-EEEEEE-S-SS-- CS
         DFP  28 SGkmGyalAeaaaarGaeVtlvsgpvslet 57 
                 SG +G++ A+a +a+G  Vtlvs+  ++  
  KIR65094.1 187 SGVTGAEFASAYLAMGVPVTLVSSRDRVMP 216
                 9**********************9965443 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.2     0.044        36       1      29 [.       4      32 ..       4      35 .. 0.90
   2 ?    2.0   0.1      0.29   2.4e+02      79     113 ..      76     110 ..      72     113 .. 0.89
   3 ?    2.2   0.0      0.26   2.1e+02       2      35 ..     183     216 ..     182     232 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.044
                EEEES-SHHHHHHHHHHHH.TTEEEEEEES CS
      TrkA_N  1 iiiiGlGrvGrslaeeLse.ggkdvvvidk 29
                i+iiG G  G++ a    + +  dv+v++ 
  KIR65094.1  4 IVIIGGGPAGYEAALVAAQlDA-DVTVVEA 32
                89************99999777.7****96 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.29
                 HHHHHHHHTSSSEEEEEESSGGGHHHHHHHTTSEE CS
      TrkA_N  79 avllakelnpkkkiiaraqdpehaellkklgadvv 113
                 ++  a++ ++  k  a aq+++   +l k+g++ v
  KIR65094.1  76 VTVDARTVHERVKRLALAQSADIHAKLVKAGVTFV 110
                 56678999999********************9877 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.26
                 EEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHH CS
      TrkA_N   2 iiiGlGrvGrslaeeLse.ggkdvvvidkdeerve 35 
                 i++G G +G + a    + g  +v+++ ++++++ 
  KIR65094.1 183 IVVGSGVTGAEFASAYLAmGV-PVTLVSSRDRVMP 216
                 9**************999566.6**9999876654 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0037         3       1      41 [.       5      39 ..       5      64 .. 0.82
   2 ?   -1.3   0.2       2.3   1.9e+03     135     155 ..     128     151 ..      76     152 .. 0.68
   3 ?   -2.7   0.3       6.5   5.3e+03       2      15 ..     184     197 ..     183     205 .. 0.81
   4 ?    8.1   0.1    0.0029       2.4     119     154 ..     238     273 ..     220     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0037
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrv 41
                   +i+G+Gp+G  ++   ++      + ++t+++ +++g g +
     KIR65094.1  5 VIIGGGPAGYEAALVAAQL-----DADVTVVEAEGAG-GAC 39
                   7********9987655555.....89********998.443 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.3
  NAD_binding_9 135 avlladg...aslaadaVvLAlGh 155
                     v+ adg   ++++a  V +A+G 
     KIR65094.1 128 VVTPADGsgkHTIDASTVLVATGA 151
                    344444433357899999999995 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 6.5
  NAD_binding_9   2 ivGaGprGlavler 15 
                    +vG G++G+ ++ +
     KIR65094.1 184 VVGSGVTGAEFASA 197
                    89*****9987765 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0029
  NAD_binding_9 119 vhraevvdleeradgqavlladgaslaadaVvLAlG 154
                    + +++++ ++++adg++v ladg+ ++  +  +A+G
     KIR65094.1 238 LNNSRAEGVRRTADGVEVELADGRLVQGSHALIAVG 273
                    34789******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3280.40
//
Query:       KIR65095.1  [L=679]
Description: multidrug ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-62  209.9   4.4    6.9e-62  209.6   4.4    1.1  1  ABC_membrane    ABC transporter transmembrane region
    2.3e-30  105.9   0.0    3.9e-30  105.2   0.0    1.4  1  ABC_tran        ABC transporter
     0.0011   19.4   0.8     0.0039   17.6   0.2    2.3  1  AAA_16          AAA ATPase domain
     0.0024   17.6   0.3      0.015   15.0   0.3    2.2  1  AAA_30          AAA domain
     0.0027   18.0   0.1      0.024   14.9   0.1    2.3  1  AAA_22          AAA domain
     0.0028   17.1   0.3       0.42   10.0   0.1    2.2  2  SMC_N           RecF/RecN/SMC N terminal domain
     0.0045   17.4   0.0      0.039   14.4   0.0    2.3  1  AAA             ATPase family associated with various cellula
     0.0053   17.0   0.4      0.012   15.8   0.4    1.7  1  EI24            Etoposide-induced protein 2.4 (EI24)
     0.0054   16.6   0.0      0.011   15.6   0.0    1.4  1  RsgA_GTPase     RsgA GTPase
      0.007   15.8   0.6      0.014   14.8   0.6    1.4  1  ABC_membrane_2  ABC transporter transmembrane region 2
  ------ inclusion threshold ------
      0.011   16.2   0.0      0.023   15.2   0.0    1.4  1  AAA_23          AAA domain
      0.029   13.9   0.0       0.35   10.4   0.0    2.6  2  AAA_25          AAA domain
      0.035   14.3   0.2       0.24   11.6   0.1    2.4  2  AAA_33          AAA domain
      0.048   13.7   0.0       0.14   12.2   0.0    1.8  1  MMR_HSR1        50S ribosome-binding GTPase
      0.067   12.9   0.1        0.2   11.4   0.0    1.7  2  AAA_29          P-loop containing region of AAA domain
      0.074   12.1   0.0       0.13   11.3   0.0    1.3  1  T2SSE           Type II/IV secretion system protein
       0.09   12.3   0.0       0.16   11.4   0.0    1.3  1  AAA_7           P-loop containing dynein motor region
        0.1   12.5   0.9       0.18   11.7   0.1    1.8  2  NTPase_1        NTPase
        0.1   12.2   0.0       0.23   11.0   0.0    1.6  1  cobW            CobW/HypB/UreG, nucleotide-binding domain
       0.13   12.3   0.0       0.25   11.4   0.0    1.4  1  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
       0.14   11.3   0.0       0.34   10.0   0.0    1.6  1  NB-ARC          NB-ARC domain
       0.15   11.8   0.1        4.3    7.1   0.0    2.3  2  DEAD            DEAD/DEAH box helicase
       0.17   11.6   0.1       0.48   10.1   0.0    1.8  2  AAA_24          AAA domain
       0.19   11.5   0.0       0.37   10.5   0.0    1.4  1  ATP_bind_1      Conserved hypothetical ATP binding protein
        0.2   11.6   0.5       0.64    9.9   0.0    2.1  3  NACHT           NACHT domain


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.6   4.4   9.6e-65   6.9e-62       2     274 .]      66     377 ..      65     377 .. 0.94

  Alignments for each domain:
  == domain 1  score: 209.6 bits;  conditional E-value: 9.6e-65
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH.......................................HHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   2 iliillailagvlsplfplvlgrildtlldkgdpet.......................................ealnvysllllllglaqfilal 59 
                   i+i+ la+++ + s+  p vlg+ +d +++    ++                                       +al +++l+ l+l+la ++l++
    KIR65095.1  66 IVIVTLALVSVGFSVYGPKVLGHATDLIFSGVIGRQlpagttaeqavaaaraagndnfadmlarmdvvpgvgidfTALGRVLLFALALYLAASVLMW 162
                   66777777777777777777777777777763333344555666677899999999***************************************** PP

                   HHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH CS
  ABC_membrane  60 lqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliil 156
                    q +lln + +r++ rlr+++ +k+ r+p+ +fd+++ Gellsr+tnd++++++ l+++l+++++sllt+vg+l++mf++++ l+lv l+ +pl ++
    KIR65095.1 163 WQGWLLNGVVQRTVLRLRADVEDKLNRLPLPYFDRQPRGELLSRVTNDIDNISQTLQQTLSQLLTSLLTVVGVLAMMFWISPLLALVALVAVPLSVV 259
                   ************************************************************************************************* PP

                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
  ABC_membrane 157 vsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisg 253
                   v+  iak++++ ++ +++++++++  +eE+++g++ Vk fgr+++++  f+ +++e  +a++ +++++g+++++++++g+lsy++++++G+  v sg
    KIR65095.1 260 VTGAIAKRSQQRFIAQWTHTGELNGQIEEAFTGHELVKVFGRQREVEAAFTAKNDELFRASFGAQFISGIIMPAMMFIGNLSYVAIAVVGGLRVASG 356
                   ************************************************************************************************* PP

                   SSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 254 elsvgdlvvflslfailfgal 274
                   ++s+gd+ +f++++ +++++l
    KIR65095.1 357 TMSLGDVQAFIQYSRQFTQPL 377
                   *****************9986 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   5.4e-33   3.9e-30       2     137 .]     440     588 ..     439     588 .. 0.91

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 5.4e-33
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTC... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxx... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdee... 84 
                  ++sl  ++g++vaivG++GaGK+tL++l+++ ++ ++G+i+ldg d+++ ++  lr +ig++ q++ lf ++ +r+n                     
  KIR65095.1 440 TDLSLVAEPGHTVAIVGPTGAGKTTLVNLVMRFYELDAGRITLDGVDITTLRRDDLRGRIGMVLQDTWLFGGT-IRDNiaygrpgaseaeiV---Aaar 534
                 5789999*****************************************************************9.**********96555551...0444 PP

                 ...HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 ...iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                    +++++++l + +  dtv++s++s++S G+kq + +ara+l +p+ll+lDE+t+
  KIR65095.1 535 atfVDRFVRSLPDGY--DTVIDSEGSNVSAGEKQLITIARAFLAEPSLLILDEATS 588
                 556888888888888..*************************************96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   5.5e-06    0.0039      25     163 ..     450     606 ..     440     615 .. 0.42

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5.5e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekd.......................ggiflrgkcdqlesaipysalaqalareellrqllde............ 88 
                 + v ++G+ G GK++lv+ ++r +e d                       g                                +l++            
  KIR65095.1 450 HTVAIVGPTGAGKTTLVNLVMRFYELDagritldgvdittlrrddlrgriG-------------------------------MVLQDtwlfggtirdni 517
                 7899*****************988888333333222222222222222220...............................11111333333222222 PP

      AAA_16  89 .......aesaeleawrekleeala........avpelagaeasrllellkrll.allsrderplvlvlDdlq.wadeaslqllaaLlrlle 163
                        +e+  ++a+r+++ +++          v + +g+  s+   +l  ++ a+l+   +p +l+lD++   +d+ +  ll+  +++l 
  KIR65095.1 518 aygrpgaSEAEIVAAARATFVDRFVrslpdgydTVIDSEGSNVSAGEKQLITIArAFLA---EPSLLILDEATsSVDTRTEVLLQRAMAALR 606
                 22222222222222222222222224443443322222222223333333333322223...256666666653334444444555555544 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.3   2.1e-05     0.015      15      99 ..     446     588 ..     442     613 .. 0.54

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.1e-05
      AAA_30  15 tsgdrvavltGpAGtGKttalkalreaweaaggrvi..glAptgkaAkvLa............................eelgi....eastiakllkr 79 
                 +++  +++++Gp G+GKtt+++ + + +e + gr+   g+  t    ++L+                             e++i    +a  ++++   
  KIR65095.1 446 AEPGHTVAIVGPTGAGKTTLVNLVMRFYELDAGRITldGVDITTLRRDDLRgrigmvlqdtwlfggtirdniaygrpgaSEAEIvaaaRATFVDRF--- 541
                 55666899********************99854443124444444444455333333333333333333333332222212222111133333333... PP

      AAA_30  80 lk............................grarlepgtllivDEagm 99 
                                               +ra l++ +lli DEa  
  KIR65095.1 542 -VrslpdgydtvidsegsnvsagekqlitiARAFLAEPSLLILDEATS 588
                 .13334666666666666666666666666555566667777777654 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   3.3e-05     0.024       8      33 ..     452     477 ..     447     616 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.3e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeea 33 
                 ++++G++G+GKTtl++ +++ ++ +a
  KIR65095.1 452 VAIVGPTGAGKTTLVNLVMRFYELDA 477
                 689***************99996544 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.025        18      26      42 ..     451     467 ..     439     481 .. 0.83
   2 !   10.0   0.1   0.00059      0.42     136     210 ..     559     629 ..     551     637 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.025
                 EEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlld 42 
                   aivGp G+GK+ l++
  KIR65095.1 451 TVAIVGPTGAGKTTLVN 467
                 468**********9986 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00059
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvg 210
                 + S Gek+L+ +a  f        +l +lDe  +  D +    + + + + +++   +vi++r  ++++ad ++ 
  KIR65095.1 559 NVSAGEKQLITIARAF----LAEPSLLILDEATSSVDTRTEVLLQRAMAALRSDRTSFVIAHRLSTIRDADLILM 629
                 6899*****9998776....4556799*****************************************9997765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   5.5e-05     0.039       2      84 ..     453     600 ..     452     628 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.5e-05
                 EEESSTTSSHHHHHHHHHHHH..THEEEEEETTTCSSS............................................................. CS
         AAA   2 llyGppGtGKTllakavakel..gvefleisgsellsk............................................................. 37 
                  ++Gp G GKT+l++ v++    ++  ++++g +++                                                               
  KIR65095.1 453 AIVGPTGAGKTTLVNLVMRFYelDAGRITLDGVDIT-Tlrrddlrgrigmvlqdtwlfggtirdniaygrpgaseaeivaaaratfvdrfvrslpdgyd 550
                 589***************985223333444444444.22445566668888888888888888888888888888888888888888899999999999 PP

                 ........STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHH CS
         AAA  38 ........yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeer 84 
                          v+++ek++  + ++     +ps l++DE+ + + +r   ++   +r
  KIR65095.1 551 tvidsegsNVSAGEKQLITIARA-FLA-EPSLLILDEATSSVDTR---TEVLLQR 600
                 98888887777888887777754.333.48999999999999888...3333333 PP

>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.4   1.7e-05     0.012      23      81 ..     147     272 ..      56     350 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHHHHHH........................................-.....................TTHHHHHHHHHHHHHHHHHH. CS
        EI24  23 lllnlllfllllvlll........................................w.....................vllasllvllllllplwlfp. 59 
                 ll +l+l+l++ vl++                                                               l ++l v+ +l++++w++p 
  KIR65095.1 147 LLFALALYLAASVLMWwqgwllngvvqrtvlrlradvedklnrlplpyfdrqprgeLlsrvtndidnisqtlqqtlsqLLTSLLTVVGVLAMMFWISPl 245
                 344444444444444434435556666666666666666666666555555555550555555666666677778887777788899999999999996 PP

                 .HHHHHHHHHH....HHHHHHHHHH.H CS
        EI24  60 .lvalllaapf....ygllaekvekrh 81 
                  +++ l+a p+    +g++a++ ++r 
  KIR65095.1 246 lALVALVAVPLsvvvTGAIAKRSQQRF 272
                 633333333336666999999998743 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.5e-05     0.011      99     128 ..     448     478 ..     428     495 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.5e-05
                  T.SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  99 d.ktsvlvGqSGvGKStLinallpelelktg 128
                    +t+++vG++G+GK+tL+n ++   el  g
   KIR65095.1 448 PgHTVAIVGPTGAGKTTLVNLVMRFYELDAG 478
                  44999***************98876666555 PP

>> ABC_membrane_2  ABC transporter transmembrane region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.6     2e-05     0.014     119     195 ..     206     285 ..     204     289 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2e-05
  ABC_membrane_2 119 ritqDvekFtsslssLlsglvkpildvilftfiLwslsgtlgl...lllllyvllatvilriigpplgklvaeeeklege 195
                     r+t+D+++ +++l + ls+l++++l+v+ + + ++ +s  l+l   +++ l v+++++i ++ +++++    +  +l+g+
      KIR65095.1 206 RVTNDIDNISQTLQQTLSQLLTSLLTVVGVLAMMFWISPLLALvalVAVPLSVVVTGAIAKRSQQRFIAQWTHTGELNGQ 285
                     89*************************99999997777776664447778889999999999999999988888888886 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   3.3e-05     0.023      21      37 ..     451     467 ..     436     470 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.3e-05
      AAA_23  21 ltlItGpNGaGKTTild 37 
                  ++I+Gp+GaGKTT+++
  KIR65095.1 451 TVAIVGPTGAGKTTLVN 467
                 468************87 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0         1   7.3e+02      49      80 ..     151     182 ..     150     222 .. 0.67
   2 ?   10.4   0.0   0.00049      0.35      10      50 ..     423     466 ..     413     473 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1
      AAA_25  49 laldlalava...tGkpwlgpvapeqgkVlyvsaE 80 
                 lal la++v+   +G+ + g   + q++Vl + a+
  KIR65095.1 151 LALYLAASVLmwwQGWLLNG---VVQRTVLRLRAD 182
                 67777777777777777766...366666655544 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00049
      AAA_25  10 vsvadlaapppprrwlvkg...llpagelallaGapgtGKttla 50 
                 v+++++  + +p + l+ +   +   g++++++G++g+GKttl+
  KIR65095.1 423 VEFDRVSFRYEPDKPLITDlslVAEPGHTVAIVGPTGAGKTTLV 466
                 67778888888888888886667889****************97 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0         2   1.5e+03      27      69 ..     178     224 ..     167     273 .. 0.71
   2 ?   11.6   0.1   0.00033      0.24       3      37 ..     453     499 ..     452     607 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2
      AAA_33  27 llssdtlrr.rlfg....tdqqsktdytrvldrlyqilnelarkalsa 69 
                 +l+ d++ + +  +    + q++ + ++rv++++ +i  ++++++ls+
  KIR65095.1 178 RLRADVEDKlNRLPlpyfDRQPRGELLSRVTNDIDNIS-QTLQQTLSQ 224
                 55555544432222455566777888888888888776.777777765 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00033
      AAA_33   3 llvGlpGsGKstlaerllkklg............avllssdtlrrrl 37 
                  +vG+ G+GK+tl+  +++                ++l+ d+lr r+
  KIR65095.1 453 AIVGPTGAGKTTLVNLVMRFYEldagritldgvdITTLRRDDLRGRI 499
                 689***********999764444444444444545555555555554 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0002      0.14       2      21 ..     452     471 ..     451     506 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0002
                 EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg 21 
                 vaivG + +GK+tL+n  ++
  KIR65095.1 452 VAIVGPTGAGKTTLVNLVMR 471
                 9***************8765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00027       0.2      23      39 ..     449     466 ..     441     471 .. 0.83
   2 ?   -3.1   0.0       9.6   6.9e+03      36      49 ..     619     632 ..     619     635 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00027
      AAA_29  23 g.atlltGpsGsGKSTll 39 
                 g ++ ++Gp+G+GK+Tl+
  KIR65095.1 449 GhTVAIVGPTGAGKTTLV 466
                 44789************8 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.6
      AAA_29  36 STllDAiqalLvpa 49 
                 ST+ DA  +l++ +
  KIR65095.1 619 STIRDADLILMMEN 632
                 99****99999866 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019      0.13     131     160 ..     451     480 ..     419     486 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
       T2SSE 131 lilvsGgTgsGKttllyallkeinksderi 160
                 ++ + G+Tg GKttl++ ++ + + +  ri
  KIR65095.1 451 TVAIVGPTGAGKTTLVNLVMRFYELDAGRI 480
                 56788************9998877666665 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00023      0.16      27      55 ..     443     471 ..     440     481 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00023
       AAA_7  27 elllknkkpvllvGptGtGKtviikdllk 55 
                 +l+ + ++ v +vGptG GKt++++ +++
  KIR65095.1 443 SLVAEPGHTVAIVGPTGAGKTTLVNLVMR 471
                 567788999***************98876 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       8.3     6e+03     110     132 ..     214     236 ..     211     239 .. 0.78
   2 ?   11.7   0.1   0.00025      0.18       2      43 ..     452     495 ..     451     506 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 8.3
                 G-HHHHHHHHHHHTTTSEEEEE- CS
    NTPase_1 110 kskkfkeaveevLksekpvlavi 132
                  s+++++++ ++L+s   v++v+
  KIR65095.1 214 ISQTLQQTLSQLLTSLLTVVGVL 236
                 57888899999998888888876 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00025
                 EEEE--TTSSHHHHHHHHHH..HH...GGGEEEEEEEEE----- CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvle..llkssgvkvgGfyteevreggr 43 
                 v+i Gp G GKtTlv+ v++  +l+   ++++G+     r+++ 
  KIR65095.1 452 VAIVGPTGAGKTTLVNLVMRfyELDAGRITLDGVDITTLRRDDL 495
                 7899**************98335666678888888887776654 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00032      0.23       3      21 ..     452     470 ..     450     480 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00032
                 EEEEESTTCCHHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhll 21 
                 + ++G+ G+GKTtL+n ++
  KIR65095.1 452 VAIVGPTGAGKTTLVNLVM 470
                 679************9876 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00035      0.25      19      45 ..     449     475 ..     436     481 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00035
                 TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgv 45 
                 g+++++ G+ GaGKTtlv  +++ +++
  KIR65095.1 449 GHTVAIVGPTGAGKTTLVNLVMRFYEL 475
                 6789**************999887655 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00048      0.34      13      42 ..     443     471 ..     435     479 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00048
                 HCTTTSCSEEEEEEESTTSSHHHHHHHHCC CS
      NB-ARC  13 lekdelqslvvalvGmgGvGKttlakqiln 42 
                 +   e++   va+vG  G GKttl++ +++
  KIR65095.1 443 SLVAEPG-HTVAIVGPTGAGKTTLVNLVMR 471
                 5556777.789*************988765 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.006       4.3      13      34 ..     448     469 ..     438     491 .. 0.82
   2 ?    2.0   0.0      0.21   1.5e+02     119     150 ..     575     606 ..     539     615 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.006
                 TTCEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  13 gggdvlvaaeTGsGKTlaflip 34 
                  g+ v + ++TG+GKT+   + 
  KIR65095.1 448 PGHTVAIVGPTGAGKTTLVNLV 469
                 68899***********986554 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.21
                 CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 119 lsqvrflVlDEadrlldqgfsdfinrilnqlp 150
                 l + ++l+lDEa    d   +  ++r +++l+
  KIR65095.1 575 LAEPSLLILDEATSSVDTRTEVLLQRAMAALR 606
                 777899********999999999999888885 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.4   3.1e+03     144     172 ..     210     238 ..     201     240 .. 0.83
   2 ?   10.1   0.0   0.00067      0.48       4      44 ..     451     488 ..     449     555 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.4
      AAA_24 144 kytrlepklgkktanelkeevDlvlranl 172
                  ++ + ++l++  +++l++ +++v+ + +
  KIR65095.1 210 DIDNISQTLQQTLSQLLTSLLTVVGVLAM 238
                 46788999999999999999999999875 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00067
      AAA_24   4 kiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfp 44 
                  ++i+Gp g+GKTtl++       f  +++G   ld+ ++ 
  KIR65095.1 451 TVAIVGPTGAGKTTLVNLV---MRFYELDAGRITLDGVDIT 488
                 589*************999...5555555665666666655 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00051      0.37       1      23 [.     454     476 ..     454     484 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00051
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelr 23 
                 +vGp G+GKtt+v+ ++ ++el 
  KIR65095.1 454 IVGPTGAGKTTLVNLVMRFYELD 476
                 79**************9998865 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       8.8   6.3e+03      90     114 ..     211     231 ..     209     239 .. 0.68
   2 ?    9.9   0.0   0.00089      0.64       1      21 [.     450     470 ..     450     477 .. 0.89
   3 ?   -2.9   0.0       7.7   5.5e+03      84      94 ..     580     590 ..     552     628 .. 0.57

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 8.8
                 STT-SS-TCH.........HHHHHC CS
       NACHT  90 lDelvtdlgqkekqpvrtlLselir 114
                 +D +++ l+q     + +lL++l++
  KIR65095.1 211 IDNISQTLQQ----TLSQLLTSLLT 231
                 6777777777....66666666665 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00089
                 SCEEEEC-TTTCHHHHHHHHH CS
       NACHT   1 rlvilqGeaGsGKTtLlqkla 21 
                 ++v++ G+ G GKTtL+  ++
  KIR65095.1 450 HTVAIVGPTGAGKTTLVNLVM 470
                 589*************98766 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 7.7
                 EEEEE-STT-S CS
       NACHT  84 LlilDglDelv 94 
                 LlilD +   v
  KIR65095.1 580 LLILDEATSSV 590
                 46666443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1106  (0.0616878); expected 358.6 (0.02)
Passed bias filter:                      732  (0.0408277); expected 358.6 (0.02)
Passed Vit filter:                       139  (0.0077528); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.48
# Mc/sec: 4213.07
//
Query:       KIR65096.1  [L=577]
Description: multidrug ABC transporter ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-41  141.0   9.1      7e-41  140.7   9.1    1.1  1  ABC_membrane     ABC transporter transmembrane region
    2.4e-27   96.1   0.0    3.6e-27   95.6   0.0    1.3  1  ABC_tran         ABC transporter
     0.0032   17.9   0.2     0.0066   16.9   0.2    1.5  1  AAA_16           AAA ATPase domain
     0.0032   16.9   0.0       0.11   11.9   0.0    2.0  2  SMC_N            RecF/RecN/SMC N terminal domain
     0.0037   16.6   0.0     0.0069   15.7   0.0    1.4  1  Zeta_toxin       Zeta toxin
  ------ inclusion threshold ------
      0.017   14.9   0.7      0.073   12.8   0.1    2.2  2  AAA_29           P-loop containing region of AAA domain
       0.02   14.0   0.0      0.097   11.7   0.0    1.9  2  T2SSE            Type II/IV secretion system protein
      0.048   13.5   0.0        0.1   12.5   0.0    1.5  1  Glyco_hydro2_C5  Glycoside hydrolase family 2 C-terminal doma
      0.056   13.3   0.0       0.11   12.4   0.0    1.4  1  RsgA_GTPase      RsgA GTPase
       0.06   13.4   0.3        0.1   12.7   0.3    1.2  1  DUF87            Helicase HerA, central domain
      0.061   13.0   0.9      0.091   12.5   0.1    1.6  2  AAA_30           AAA domain
       0.18   11.4   0.2       0.41   10.2   0.2    1.6  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
       0.28   11.7   0.3       0.41   11.1   0.3    1.1  1  AAA_23           AAA domain


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7   9.1     5e-44     7e-41       3     274 .]      19     288 ..      17     288 .. 0.99

  Alignments for each domain:
  == domain 1  score: 140.7 bits;  conditional E-value: 5e-44
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHH CS
  ABC_membrane   3 liillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGe 99 
                   +++ ++++++++s+  p++ + i+d  +  gd+ +  + ++  ++ll+ l+q+ ++++ +yl   t++   +++r++lf ++ r + +   +  + +
    KIR65096.1  19 AVLAFQFVGTMASLYLPSLNADIIDQGVARGDTGY--IMRTGGWMLLVSLVQITCSTAAVYLGARTAMGFGRDVRAELFAHVNRFSAREVARFGAPS 113
                   578899*****************************..************************************************************ PP

                   HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT CS
  ABC_membrane 100 llsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkaf 196
                   l++r tndv++++ ++ ++  ++  + ++ vgg+++++     l++++l+ +p++++  a+i +++ + ++ +q++++ +++v++E+++gir+V+af
    KIR65096.1 114 LITRNTNDVQQVQMLVLMSCTILAAAPIMSVGGVVMALREDIGLSWLMLVSVPVLAVALALIIRRMVPGFRLMQTRIDVVNRVLREQITGIRVVRAF 210
                   ************************************************************************************************* PP

                   TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 197 greeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                    re+y++e+f  a+ +    +++  ++ +l+++i +l+ ++s +++lwfG+  v++g+++vg l++fl++++++++a+
    KIR65096.1 211 VREPYETERFGRANADLTATALRTGRLMALIFPIVMLVLNVSSIAVLWFGAERVDAGQIQVGALTAFLQYLMQILMAV 288
                   ************************************************************************999986 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.0   2.6e-30   3.6e-27       1     135 [.     351     498 ..     351     500 .. 0.86

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 2.6e-30
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................esde 83 
                 l+++s++ ++g+++a++G++GaGK+tLl l+ +l++ t+G +l+dg d+++    +l ++ig +pq p lf+++ +++n                 + +
  KIR65096.1 351 LHDISFTARAGRTTAVIGSTGAGKTTLLTLIPRLVDATAGAVLVDGVDVRDLAPDELWRRIGLVPQRPYLFSGT-IASNlrygnpdatddelwaaLEVA 448
                 789************************************************888999999**************.99999***9996655553322222 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEp 135
                 ++ +++++l   e  d ++ ++++++SgGq+qr+a+aral++kp+++l+D+ 
  KIR65096.1 449 QARDFVAELP--EGLDAPIAQGGTNVSGGQRQRLAIARALVRKPEIYLFDDS 498
                 3444444444..46688888999***************************86 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   4.8e-06    0.0066      19     168 ..     358     524 ..     350     526 .. 0.52

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.8e-06
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqalareellrqllde.............aesaeleawreklee 103
                 +r+g  + + ++G  G GK++l++ ++r + ++ g + + g  ++    ++ + l++ +                         +++++ e w++   +
  KIR65096.1 358 ARAG--RTTAVIGSTGAGKTTLLTLIPRLVDATAGAVlVDGVDVRD---LAPDELWRRIGLVPQRPY---LfsgtiasnlrygnPDATDDELWAALEVA 448
                 4555..67999****************7666664444144433333...222334444422222222...24445554444455444455555554433 PP

      AAA_16 104 ala..............avpelagaea........srllellkrllallsrderp.lvlvlDdlqwadeaslqllaaLlrllesk.pll 168
                 +++              a                 +r + +++r+l++     +p ++l+ D +  +d ++ + l+a lr ++++  ++
  KIR65096.1 449 QARdfvaelpegldapiA--------QggtnvsggQRQRLAIARALVR-----KPeIYLFDDSFSALDLGTDARLRAALRPVTRDaAVV 524
                 333555555444333221........1333333334444444455522.....222788877788777777777888888777654554 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.055        76      25      41 ..     362     378 ..     354     384 .. 0.86
   2 !   11.9   0.0   8.2e-05      0.11     136     209 ..     471     540 ..     383     546 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.055
                 SEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnll 41 
                 + ta++G+ G+GK+ ll
  KIR65096.1 362 RTTAVIGSTGAGKTTLL 378
                 679***********987 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 8.2e-05
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklv 209
                 + SgG+++ +a+a       v++  +yl+D+  +aLD    +++   l+  + +a +++++ r  ++ +ad+++
  KIR65096.1 471 NVSGGQRQRLAIA----RALVRKPEIYLFDDSFSALDLGTDARLRAALRPVTRDAAVVIVAQRVSTIVDADQII 540
                 7899999866655....44567778*********************************************9987 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     5e-06    0.0069      22      60 ..     367     405 ..     351     410 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5e-06
  Zeta_toxin  22 gGqpGAGKselaellkdelerqgnvvrldpDdlRelhPe 60 
                  G++GAGK++l++l+ + ++++ ++v +d+ d+R l P+
  KIR65096.1 367 IGSTGAGKTTLLTLIPRLVDATAGAVLVDGVDVRDLAPD 405
                 59*********************************9997 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   5.3e-05     0.073      21      39 ..     359     378 ..     350     389 .. 0.80
   2 ?   -0.7   0.1      0.87   1.2e+03      36      46 ..     531     541 ..     531     545 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.3e-05
      AAA_29  21 lkg.atlltGpsGsGKSTll 39 
                 ++g +t ++G +G+GK+Tll
  KIR65096.1 359 RAGrTTAVIGSTGAGKTTLL 378
                 35579**************8 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.87
      AAA_29  36 STllDAiqalL 46 
                 ST++DA q++ 
  KIR65096.1 531 STIVDADQIIV 541
                 9*****88775 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     7e-05     0.097      82     156 ..     317     388 ..     249     407 .. 0.73
   2 ?   -0.8   0.0      0.46   6.4e+02      76     107 ..     506     538 ..     492     546 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7e-05
       T2SSE  82 vvllPvvagealviR.kksakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156
                  v++P++  +++++R + + ++++++  ga++ + ++i+ + r+      +  v G Tg GKttll  +   ++++
  KIR65096.1 317 TVVPPAAPVTEVTVRgELELRDVRFQYPGASAPVLHDISFTARAG----RTTAVIGSTGAGKTTLLTLIPRLVDAT 388
                 567888888999999888889999988888888888887766666....556677***********9887777766 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.46
       T2SSE  76 kgvrlrvvllPvvagealviR.kksakeltldd 107
                 + +rlr++l Pv+++ a+vi  ++ +  ++ d+
  KIR65096.1 506 TDARLRAALRPVTRDAAVVIVaQRVSTIVDADQ 538
                 6789999999***99999998444444445555 PP

>> Glyco_hydro2_C5  Glycoside hydrolase family 2 C-terminal domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.3e-05       0.1      22      92 ..     309     379 ..     305     389 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.3e-05
  Glyco_hydro2_C5  22 vevvDknGnlvpnadnevtfeveGpGelvgvdngdptslesf.ksnerkafnGkalaivrstkeaGkitlta 92 
                      vev+D + ++vp a+   +++v+G+ el  v  + p    +  ++ +++a  G+++a++ st+ aGk tl  
       KIR65096.1 309 VEVLDTDSTVVPPAAPVTEVTVRGELELRDVRFQYPGASAPVlHDISFTARAGRTTAVIGSTG-AGKTTLLT 379
                      89******************************99997776651666999*************9.89988865 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.8e-05      0.11      98     120 ..     360     382 ..     344     394 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.8e-05
                  TTSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinall 120
                  +++t++++G++G+GK+tL+  + 
   KIR65096.1 360 AGRTTAVIGSTGAGKTTLLTLIP 382
                  459***************97654 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   7.3e-05       0.1      24      48 ..     362     385 ..     352     395 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.3e-05
       DUF87  24 rHlAilgsTGsGKSntvavLleell 48 
                 r +A++gsTG+GK+++  ++  +l+
  KIR65096.1 362 RTTAVIGSTGAGKTTLLTLI-PRLV 385
                 668***********998765.4555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   6.6e-05     0.091      15      50 ..     358     393 ..     354     408 .. 0.75
   2 ?   -3.3   0.1       4.6   6.3e+03      84     112 ..     532     560 ..     506     567 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.6e-05
      AAA_30  15 tsgdrvavltGpAGtGKttalkalreaweaaggrvi 50 
                 +   r++++ G  G+GKtt+l+ + ++++a  g v+
  KIR65096.1 358 ARAGRTTAVIGSTGAGKTTLLTLIPRLVDATAGAVL 393
                 45557999****************998888853433 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.6
      AAA_30  84 arlepgtllivDEagmvdtkqlaallkaa 112
                 + ++++++++    g v++   a+ll+ +
  KIR65096.1 532 TIVDADQIIVLEDGGIVGMGRHAELLENC 560
                 33455577777777777777777777765 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2    0.0003      0.41       3      33 ..     364     394 ..     362     402 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0003
                 EEEEESTTCCHHHHHHHHHCT--SS-EEEEE CS
        cobW   3 tvltGflGsGKTtLlnhllenraglklaviv 33 
                 t + G+ G+GKTtLl+ + +  +    av+v
  KIR65096.1 364 TAVIGSTGAGKTTLLTLIPRLVDATAGAVLV 394
                 7899***********8777766666666665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3    0.0003      0.41      20      39 ..     362     381 ..     351     382 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
      AAA_23  20 gltlItGpNGaGKTTildAi 39 
                   t+++G +GaGKTT+l  i
  KIR65096.1 362 RTTAVIGSTGAGKTTLLTLI 381
                 57999***********9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 4179.93
//
Query:       KIR65097.1  [L=160]
Description: MarR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-14   53.7   0.0    2.2e-14   53.1   0.0    1.3  1  MarR      MarR family
    9.5e-10   38.2   0.9    2.9e-09   36.7   0.9    1.9  1  MarR_2    MarR family
    2.4e-09   37.5   0.2    4.2e-09   36.8   0.2    1.4  1  HTH_27    Winged helix DNA-binding domain
    0.00061   19.6   0.0    0.00093   19.0   0.0    1.3  1  TrmB      Sugar-specific transcriptional regulator TrmB
     0.0028   17.3   0.0     0.0041   16.8   0.0    1.2  1  SMC_ScpB  Segregation and condensation complex subunit ScpB
       0.01   15.7   0.0      0.022   14.6   0.0    1.6  2  HxlR      HxlR-like helix-turn-helix
  ------ inclusion threshold ------
      0.017   15.1   0.1      0.036   14.0   0.1    1.7  1  PadR      Transcriptional regulator PadR-like family
      0.021   14.6   0.2      0.055   13.3   0.1    1.8  1  HTH_IclR  IclR helix-turn-helix domain
      0.022   15.1   0.0      0.038   14.3   0.0    1.3  1  Rrf2      Transcriptional regulator


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   1.1e-17   2.2e-14       1      59 []      36      94 ..      36      94 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 1.1e-17
                --HHHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTSE CS
        MarR  1 ltltqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRskspeDrRev 59
                lt++ + +L++l+++g+l +   a++  + ++t+t ++d+Le++Gl+eR+++  DrR+v
  KIR65097.1 36 LTQAGMATLMTLAQHGELPLRAVAEAGFIRPATLTGIVDTLERDGLVERQRDDTDRRSV 94
                6888899**************************************************98 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.9   1.4e-12   2.9e-09       1      62 []      34      93 ..      34      93 .. 0.97

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.4e-12
                TT--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2  1 lgltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                +glt a    L+ L+ +++  l  +++a++  + +++++ i++ L++ GLver+++++D+R+
  KIR65097.1 34 HGLTQAGMATLMTLAQHGE--LPLRAVAEAGFIRPATLTGIVDTLERDGLVERQRDDTDRRS 93
                699999999*********9..****************************************6 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.2   2.1e-12   4.2e-09       6      68 .]      41     102 ..      36     102 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 2.1e-12
      HTH_27   6 alvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                  ++L +++ ++++  l++++++  +  ++   +++ L++ GLver++d++drr++r+ lT++G
  KIR65097.1  41 MATLMTLA-QHGELPLRAVAEAGFIRPATLTGIVDTLERDGLVERQRDDTDRRSVRLVLTPAG 102
                 67899999.9****************************************************9 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.7e-07   0.00093       2      58 ..      31      88 ..      30     100 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.7e-07
                H.HCHHHHHCCCHCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB  2 q.klGLseyEakvYlaLlklgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                + ++GL++  + +  +L ++g++  + +ae+  +  ++   ++  Le+ GlVer++  
  KIR65097.1 31 AeEHGLTQAGMATLMTLAQHGELPLRAVAEAGFIRPATLTGIVDTLERDGLVERQRDD 88
                5589**************************************************9865 PP

>> SMC_ScpB  Segregation and condensation complex subunit ScpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     2e-06    0.0041      71     143 ..      28     100 ..      18     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2e-06
    SMC_ScpB  71 klvkekkktrLsqaaletLaiIaykqpvtraeiee...iRGvnsdsvvrtLlerglieekgrkeepgrpilYgtTe 143
                 +++ e  ++ L+qa + tL   a +  +    ++e   iR  + +++v+tL + gl+e+++ +++  r++ + +T 
  KIR65097.1  28 RYLAE--EHGLTQAGMATLMTLAQHGELPLRAVAEagfIRPATLTGIVDTLERDGLVERQR-DDTDRRSVRLVLTP 100
                 45555..799****************9987777765669******************9998.77888898888775 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.9   5.8e+03       1       8 [.      21      28 ..      21      34 .. 0.79
   2 !   14.6   0.0   1.1e-05     0.022      30      83 ..      63     116 ..      44     122 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.9
                HHHSTTHH CS
        HxlR  1 liggkWkl 8 
                ++g++W+ 
  KIR65097.1 21 IVGQRWNR 28
                68999985 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.1e-05
                 TS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHHHHH CS
        HxlR  30 kisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelkkwg 83 
                  i   +L+     Le+dgl+er+  ++    v   lt++Gr+  ++l +l++ g
  KIR65097.1  63 FIRPATLTGIVDTLERDGLVERQRDDTDRRSVRLVLTPAGRERVAALITLMQSG 116
                 5666788888999****************************9999999988765 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.8e-05     0.036      31      74 ..      66     107 ..      44     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHH CS
        PadR  31 eGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrela 74 
                 +++l  + ++Le++glve+++++++  ++     lT+aGr+++a
  KIR65097.1  66 PATLTGIVDTLERDGLVERQRDDTD--RRSVRLVLTPAGRERVA 107
                 566777899***********99974..33334579*****9876 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.7e-05     0.055      11      51 ..      46      85 ..      37      86 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.7e-05
                T-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR 11 alaeapqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                 la++++ l l+ +A++  + ++t  +++ tL++ G+ve++
  KIR65097.1 46 TLAQHGE-LPLRAVAEAGFIRPATLTGIVDTLERDGLVERQ 85
                6777777.9******************************96 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.9e-05     0.038       9      59 ..      39      86 ..      35      87 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-05
                HHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
        Rrf2  9 yalhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvr 59
                 ++ +l+ La++ e   + ++++ae   i p  l  i+ +L++ glv+ +r
  KIR65097.1 39 AGMATLMTLAQHGE---LPLRAVAEAGFIRPATLTGIVDTLERDGLVERQR 86
                56778888998888...99****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 1017.95
//
Query:       KIR65098.1  [L=147]
Description: DoxX family protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-05   24.1  16.8    2.9e-05   24.1  16.8    1.9  2  DoxX_2    DoxX-like family
      0.005   17.4  12.5      0.005   17.4  12.5    2.3  3  DoxX      DoxX


Domain annotation for each model (and alignments):
>> DoxX_2  DoxX-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.3       1.4   1.3e+04      53      56 ..       8      11 ..       4      22 .. 0.41
   2 !   24.1  16.8   3.2e-09   2.9e-05       2      83 ..      32     110 ..      31     143 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.4
      DoxX_2 53 llpl 56
                ++++
  KIR65098.1  8 VAGF 11
                3332 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 3.2e-09
      DoxX_2   2 ltvllalffllsGvakllraeevvakfa..qlgfpssfvrllGvvellgalgLllplvtaprltplAavglallmvgAiathlr 83 
                 l v la++f+l ++a+++  +  + ++   +l  p  +v+++Gv+el+ga++Ll+p+     ++ +Aa+gl ll+++ + +++ 
  KIR65098.1  32 LRVGLAALFALTAFAHFTGRRADLIAMVppRLPHPGLLVTVTGVLELAGAVALLVPA-----TAGWAAAGLGLLLLAMFPANAS 110
                 56789*************7765555554356789999*******************5.....8889999998887776555532 PP

>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.6         1   9.4e+03      60      65 ..       8      14 ..       2      22 .. 0.45
   2 !   17.4  12.5   5.5e-07     0.005       4      78 ..      31     103 ..      30     109 .. 0.88
   3 ?   -0.2   0.1      0.17   1.5e+03       4      17 ..     127     140 ..     121     146 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1
        DoxX 60 llGl.lt 65
                + G+ l+
  KIR65098.1  8 VAGFtLA 14
                3333123 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 5.5e-07
        DoxX   4 llRlllgvlfiahGlqkltgfglegtaaslaalglpppellaylaalvElvgglllllGlltRlaAlalavtllv 78 
                 +lR+ l++lf ++ +  +tg    +   ++++  lp+p ll+ +++++El+g+++ll+   + +aA++l ++ll+
  KIR65098.1  31 ALRVGLAALFALTAFAHFTG--RRADLIAMVPPRLPHPGLLVTVTGVLELAGAVALLVPATAGWAAAGLGLLLLA 103
                 69*****************5..44455556678888*********************************999886 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.17
        DoxX   4 llRlllgvlfiahG 17 
                 + R ll v+f+a+ 
  KIR65098.1 127 VPRALLQVVFLAAA 140
                 45666666666553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1169.99
//
Query:       KIR65099.1  [L=185]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-18   66.0   6.5    4.3e-18   66.0   6.5    2.1  2  TetR_C_33  Tetracyclin repressor-like, C-terminal domain
    3.2e-11   42.8   0.9    3.2e-11   42.8   0.9    2.4  3  TetR_N     Bacterial regulatory proteins, tetR family
     0.0012   19.0   3.0     0.0012   19.0   3.0    2.1  2  TetR_C_6   BetI-type transcriptional repressor, C-terminal
  ------ inclusion threshold ------
       0.21   11.4   2.8       0.27   11.0   0.0    2.2  2  LacI       Bacterial regulatory proteins, lacI family


Domain annotation for each model (and alignments):
>> TetR_C_33  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.8      0.47   2.1e+03      53      53 ..      40      40 ..       5      79 .. 0.53
   2 !   66.0   6.5   9.6e-22   4.3e-18       2     104 .]      81     183 ..      80     183 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.47
                G CS
   TetR_C_33 53 a 53
                +
  KIR65099.1 40 R 40
                2 PP

  == domain 2  score: 66.0 bits;  conditional E-value: 9.6e-22
                 HHHHHHHHHHHHH-HHHHHHCCSS--TT-S-HGHHCCCCHHHHHHHHHHHGGG---TH--CCHHHHHHHHHHHHHHHHHHHHCTTT..TSSS-HHHHHH CS
   TetR_C_33   2 ralarayrrfAlahpaeYallfgspvpgyaapdelaaagarvlalllaalaalvaaglppadavaaaralwaalhGlvsLelfghf..glpadpdalfe 98 
                 + ++ ay+rfA+ h+a+++++f+ +    ++p e+aaa +r++ +l+a +aal ++g  ++d+ a a+a+w+ +hG+++L l+g +  ++++dp+a ++
  KIR65099.1  81 LDAGVAYVRFAVGHRAHFEVMFRPELYRRDDP-EVAAARERAGVALRAGVAALPRDGT-DPDQEADALAAWSIVHGFATLWLAGALppRTGPDPEAAAR 177
                 56889*****************6666566777.9*******************99999.7779***********************9666********9 PP

                 HHHHHH CS
   TetR_C_33  99 rlvdal 104
                  ++++l
  KIR65099.1 178 NVIRRL 183
                 999886 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.1   5.1e+03      11      15 ..       4       8 ..       3      13 .. 0.79
   2 !   42.8   0.9   7.1e-15   3.2e-11       1      47 []      16      62 ..      16      62 .. 0.97
   3 ?   -2.2   0.2      0.84   3.7e+03      22      29 ..     123     130 ..     119     131 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
                HHHTT CS
      TetR_N 11 erGyd 15
                +rGy+
  KIR65099.1  4 QRGYH 8 
                89999 PP

  == domain 2  score: 42.8 bits;  conditional E-value: 7.1e-15
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                +l+aA+e + e G +a+++r++A+rAGvs +a  ++F++K++Ll al
  KIR65099.1 16 LLAAAVEAITEAGPAALSLRDLARRAGVSHAAPAHHFGDKAGLLTAL 62
                79******************************************885 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.84
                 HHHHHTSS CS
      TetR_N  22 IAkrAGvs 29 
                 +A rAGv+
  KIR65099.1 123 VALRAGVA 130
                 56677776 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.4      0.34   1.5e+03      51      77 ..      14      39 ..       7      47 .. 0.56
   2 !   19.0   3.0   2.7e-07    0.0012      33     109 ..     100     183 ..      96     185 .] 0.87

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.34
                HHHHHHHHHHHHHTTSCTTSTHHHHHH CS
    TetR_C_6 51 rsnlrallaelaegglradadaeaaAe 77
                r++l+a+++++ e   +a+  +++ A+
  KIR65099.1 14 RALLAAAVEAITE-AGPAALSLRDLAR 39
                3344444444444.4445555555554 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 2.7e-07
                 HTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSTHHHHHHHHHH..HHHHH...HHHHHHTC..TTCHHHHHHHHHHHH CS
    TetR_C_6  33 aardpelaelqrenyarlrsnlrallaelaegglradadaeaaAerlaA..lidGL...wlraalap..eeldaeraralvrrh 109
                 ++ +pel ++ +   a+ r++   +l+++++++ r++ d++++A++laA  +++G+   wl +al p  ++ ++++ar ++rr 
  KIR65099.1 100 VMFRPELYRRDDPEVAAARERAGVALRAGVAALPRDGTDPDQEADALAAwsIVHGFatlWLAGALPPrtGPDPEAAARNVIRRL 183
                 78899*******************************************9668***97778888888876666788888888875 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.1e-05      0.27       2      14 ..      34      46 ..      33      49 .. 0.90
   2 ?   -1.2   1.3      0.39   1.8e+03       5      12 ..     123     130 ..     121     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.1e-05
                HHHHHHHCTS-HH CS
        LacI  2 ikDVArlAGVSka 14
                ++D+Ar+AGVS a
  KIR65099.1 34 LRDLARRAGVSHA 46
                89*********87 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.39
                 HHHHCTS- CS
        LacI   5 VArlAGVS 12 
                 VA +AGV 
  KIR65099.1 123 VALRAGVA 130
                 9*****95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1433.24
//
Query:       KIR65100.1  [L=144]
Description: MarR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-09   37.4   0.0    3.3e-09   36.5   0.0    1.4  1  MarR            MarR family
    1.9e-08   34.1   1.3    1.9e-08   34.1   1.3    2.7  3  MarR_2          MarR family
    5.8e-05   23.5   0.1    0.00036   21.0   0.0    2.2  2  HTH_27          Winged helix DNA-binding domain
     0.0031   17.4   0.0     0.0053   16.6   0.0    1.4  1  TrmB            Sugar-specific transcriptional regulator TrmB
  ------ inclusion threshold ------
      0.021   15.0   0.0      0.073   13.3   0.0    1.9  2  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.3e-13   3.3e-09      13      58 ..      31      76 ..      28      77 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.3e-13
                HHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR 13 yeqgplsvseLakklgvskstvtrvldrLekkGlieRskspeDrRe 58
                ++ +pl   eL+++lg+ ++++t ++drL+++G + R ++p+DrR 
  KIR65100.1 31 ASTEPLGPVELGNRLGIRSASATSLVDRLVQAGHVARAPHPRDRRR 76
                677899999************************************6 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1     0.099   3.6e+02      23      33 ..       8      18 ..       2      32 .. 0.83
   2 !   34.1   1.3   5.3e-12   1.9e-08       2      62 .]      17      76 ..      16      76 .. 0.92
   3 ?   -1.5   0.0      0.66   2.4e+03      31      45 ..      79      93 ..      78      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.099
                EHHHHHHHHTS CS
      MarR_2 23 tvgelarrlgl 33
                t ++larrlg+
  KIR65100.1  8 TRAALARRLGI 18
                67899***998 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 5.3e-12
                T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2  2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                g+  ++a ++ +L ++ ++ l + el  rlg+  ++++ +++rLv+aG+v r p p+D+R+
  KIR65100.1 17 GIGATDAAAIEHLVASTEP-LGPVELGNRLGIRSASATSLVDRLVQAGHVARAPHPRDRRR 76
                6667888889999999887.999*************************************7 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.66
                HTSSHHHHHHHHHHH CS
      MarR_2 31 lglsksavsrilkrL 45
                l+++ +a+ ++++ L
  KIR65100.1 79 LQVTDHAAEQVVEAL 93
                899999999999876 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.33   1.2e+03      17      36 ..       5      24 ..       2      33 .. 0.76
   2 !   21.0   0.0   9.9e-08   0.00036      23      66 ..      40      83 ..      18      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.33
      HTH_27 17 rrkkladlcgrlnvedshis 36
                ++++ a+l++rl ++++ ++
  KIR65100.1  5 AGDTRAALARRLGIGATDAA 24
                57888999999999988764 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 9.9e-08
      HTH_27 23 dlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTd 66
                +l  rl + ++++ + +++L+ +G v r + ++drr+ ++++Td
  KIR65100.1 40 ELGNRLGIRSASATSLVDRLVQAGHVARAPHPRDRRRLCLQVTD 83
                78899**************************************9 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.5e-06    0.0053       2      57 ..      13      70 ..      12      81 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.5e-06
                H.HCHHHHHCCCHCHHHH.HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB  2 q.klGLseyEakvYlaLl.klgpatadeiaeelgvprskvYevLrsLedkGlVerekg 57
                +  lG+  ++a +   L+ + +p+   e+ ++lg+  +++ + + +L+++G V r + 
  KIR65100.1 13 ArRLGIGATDAAAIEHLVaSTEPLGPVELGNRLGIRSASATSLVDRLVQAGHVARAPH 70
                5589**************99*********************************99765 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   4.4e+03      25      34 ..       9      18 ..       8      21 .. 0.80
   2 ?   13.3   0.0     2e-05     0.073      22      56 ..      35      69 ..      25      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
                    HHHHHHHHTS CS
  Fe_dep_repress 25 tkdlaerLnv 34
                    ++ la+rL++
      KIR65100.1  9 RAALARRLGI 18
                    5789****98 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2e-05
                    SB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
  Fe_dep_repress 22 vvktkdlaerLnvspssVsemlkkLekdGyveyek 56
                    + ++ +l  rL+++ +s++  + +L ++G v  ++
      KIR65100.1 35 PLGPVELGNRLGIRSASATSLVDRLVQAGHVARAP 69
                    56677999*********************997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1095.73
//
Query:       KIR65101.1  [L=479]
Description: inosine-5-monophosphate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-102  343.7   3.3   1.3e-102  343.4   3.3    1.0  1  IMPDH            IMP dehydrogenase / GMP reductase domain
    6.4e-17   61.7   7.3    8.7e-08   32.5   0.0    4.0  5  CBS              CBS domain
    4.9e-05   22.9   5.2    4.9e-05   22.9   5.2    2.4  2  NMO              Nitronate monooxygenase
    6.5e-05   22.1  11.6    0.00052   19.2  11.6    2.2  1  FMN_dh           FMN-dependent dehydrogenase
    7.4e-05   22.3   0.2     0.0046   16.5   0.0    2.3  2  His_biosynth     Histidine biosynthesis protein
     0.0026   17.2   2.4     0.0053   16.2   1.1    2.0  2  Aldolase         KDPG and KHG aldolase
     0.0074   15.5   0.6      0.011   14.8   0.6    1.2  1  Glu_synthase     Conserved region in glutamate synthase
  ------ inclusion threshold ------
      0.054   13.0   0.0      0.096   12.1   0.0    1.3  1  Peptidase_A4     Peptidase A4 family
       0.16   13.0   1.4       0.75   10.8   0.1    2.5  2  Methyltransf_24  Methyltransferase domain


Domain annotation for each model (and alignments):
>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.4   3.3  6.3e-106  1.3e-102       2     343 ..      13     473 ..      12     474 .. 0.96

  Alignments for each domain:
  == domain 1  score: 343.4 bits;  conditional E-value: 6.3e-106
                 --GGGEEEE---B-S-GG.GSB--EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHHHHHHHHHTS................. CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
       IMPDH   2 ltfddvllvpaksevlpk.evdlktkltkkiklniPlvsaamdtvtesemAialareGgigvihknlsieeqaeevkkvkrs................. 82 
                 lt++dv++ pa+sev ++ +vdl+t+  +    +iPlv a+m +v++++mA ++ar+G+i+vi +++ i+  a+ v  vkr                  
  KIR65101.1  13 LTYNDVFMAPARSEVGSRlDVDLATSDGT--GTTIPLVVANMTAVAGRRMAETVARRGAIAVIPQDIPIDVVANVVGWVKRRhlvhdtaitlgptdtvg 109
                 8***************9999999987665..5789**********************************************9***************** PP

                 ................................................................................................TTS CS
                 ................................................................................................xxx RF
       IMPDH  83 ................................................................................................pna 85 
                                                                                                                  + 
  KIR65101.1 110 daihllpkrshgavvvvdeagrplgvvteadtlgvdrfaqlrhvmstelhtvpadadprtgfdrlsaarrrlapvvdgdgrlvgvltrkgalratlYRP 208
                 *********************************************************************************************999666 PP

                 XBXTTSXB-EEEEE-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-STTBHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  86 akdekgrllvgaavgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpGsiCttrv 184
                 a d++grl+v+aavg++ d + +++al+eagvd lvvd+ahgh+e++++a+++++k  + v v aGnv+ta+g+++L+eagad+vkvG+GpG++Cttr+
  KIR65101.1 209 AVDDRGRLRVAAAVGINGDVTGKAAALLEAGVDTLVVDTAHGHQERMMSALRAVRKLDPGVPVAAGNVVTADGVRDLVEAGADIVKVGVGPGAMCTTRM 307
                 78*****************************************************99999*************************************** PP

                 HCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEEEEET.TEEEEEEEETTSHHHHHH.-SS-TTS-.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxxxxx. RF
       IMPDH 185 vagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagteEspgevilie.grkyKeyrGmgslgamkk.gskdryfqk. 280
                 ++gvG+pq++Av+++a+aa++ g +v+aDGG+++ +d++ AlaaGa+ vm+Gs++agt Espg++++   gr+yKe  Gm+s +a+++ +++d  f++ 
  KIR65101.1 308 MTGVGRPQFSAVLDCAAAARELGRHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLYTDAdGRRYKESFGMASSRAVSArTAEDGAFDRa 406
                 ****************************************************************998766****************5525777788743 PP

                 .--SS-SBEEEEE....E--B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHHH-EEEEE-HHHHHHHS CS
                 xxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 281 keklvpeGvegrv....pykgsvkevveqlvgglrsgmgylGaktieelkekakfvritaaglkesh 343
                 ++ +++eG++++     p++  v+++++++++g+rs+++y+Ga+t++e+ e+a +  +++ag++e+ 
  KIR65101.1 407 RKGIFEEGISSARmyldPDRPGVEDLIDEIISGVRSACTYAGARTLAEFAERALVGVQSTAGYTEGM 473
                 679*******987455677999*****************************************9986 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.69   1.4e+03      35      52 ..      72      95 ..      54      99 .. 0.67
   2 !   29.9   0.4   2.8e-10   5.6e-07      10      52 ..     100     142 ..      92     145 .. 0.85
   3 !   32.5   0.0   4.4e-11   8.7e-08       2      54 ..     151     203 ..     150     206 .. 0.90
   4 ?   -3.1   0.0       5.6   1.1e+04      20      37 ..     231     246 ..     230     249 .. 0.78
   5 ?   -1.2   0.0       1.5   2.9e+03      11      25 ..     421     436 ..     415     443 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.69
                EE......ETTTBEEEEEEHHHHH CS
         CBS 35 VV......dedgklvGivtlrDll 52
                V+      d   ++vG v +r+l+
  KIR65101.1 72 VIpqdipiDVVANVVGWVKRRHLV 95
                554444444456799999999986 PP

  == domain 2  score: 29.9 bits;  conditional E-value: 2.8e-10
                 EEEETTSBHHHHHHHHHHHT.SSEEEEEETTTBEEEEEEHHHHH CS
         CBS  10 vtvppdttleealelmrekg.vsrlPVVdedgklvGivtlrDll 52 
                 +t+ p++t+++a+ l+  k+ ++++ VVde g+++G+vt+ D l
  KIR65101.1 100 ITLGPTDTVGDAIHLL-PKRsHGAVVVVDEAGRPLGVVTEADTL 142
                 79**************.55568888778************9966 PP

  == domain 3  score: 32.5 bits;  conditional E-value: 4.4e-11
                 HHHSBSSCEEEETTSBHHHHHHHHHHHTSSEE.EEEETTTBEEEEEEHHHHHHH CS
         CBS   2 gdimtrdvvtvppdttleealelmrekgvsrl.PVVdedgklvGivtlrDllra 54 
                 +++m+++++tvp d++ +  ++++  +  +rl PVVd+dg+lvG++t++  lra
  KIR65101.1 151 RHVMSTELHTVPADADPRTGFDRLSAA-RRRLaPVVDGDGRLVGVLTRKGALRA 203
                 679*********************544.59**9***************998887 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 5.6
                 HHHHHHHHHTSSEEEEEE CS
         CBS  20 ealelmrekgvsrlPVVd 37 
                 +a+ l+ e+gv+ l VVd
  KIR65101.1 231 KAAALL-EAGVDTL-VVD 246
                 577788.8999999.997 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 1.5
                 EEETTSB.HHHHHHHH CS
         CBS  11 tvppdtt.leealelm 25 
                 +++pd + +e++++++
  KIR65101.1 421 YLDPDRPgVEDLIDEI 436
                 89999999*****985 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.3     0.056   1.1e+02       9      40 ..      42      73 ..      36      83 .. 0.88
   2 !   22.9   5.2   2.5e-08   4.9e-05     128     239 ..     261     376 ..     212     401 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.056
         NMO  9 kikppvvqpgmggiskarLaaavsnaGgLGvl 40
                ++  p+v + m  +++ r+a  v+  G++ v+
  KIR65101.1 42 GTTIPLVVANMTAVAGRRMAETVARRGAIAVI 73
                5677999999******************9876 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 2.5e-08
         NMO 128 vvarlkeagvvliptissvkearkvearGaDalivqGpeaGGhqGtpevgd...kglfaLvpqvldavd..iPviAaGGiidrrgvaaaLalGAsgvqi 221
                 +v +l+ +  v+ + + +++ +r + ++GaD++ v G   G +  t+ + +    +  a+++ ++ a +    v A GG+   r+va aLa+GAs v i
  KIR65101.1 261 AVRKLDPGVPVAAGNVVTADGVRDLVEAGADIVKV-GVGPGAMCTTRMMTGvgrPQFSAVLDCAAAARElgRHVWADGGVRHPRDVALALAAGASNVMI 358
                 5677777888899999***************8755.8888999885544443545667788888899885557************************** PP

         NMO 222 gtrfLltkesdakdahkk 239
                 g+ f +t es+   ++++
  KIR65101.1 359 GSWFAGTYESPGDLYTDA 376
                 **********98877765 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2  11.6   2.6e-07   0.00052     210     302 ..     261     361 ..     223     367 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.6e-07
                 HHHHHHS.SEEEEEEE-SHHHHHHHHHTTESEEEE--GGG.....TSSTT-.--HHHCHHHHHHHH...SS-EEEESS--SHHHHHHHHHTT-SEEEES CS
      FMN_dh 210 wlreqtk.lplvvKGvltaedakraveaGvdgivvSNHGG.....Rqldga.patidvLpeiveavgg.rievlvDgGirrGsDvlkAlalGAdavllG 300
                  +r+  + +p+    v+ta+ ++ +veaG+d++ v    G     R + g+  + +++  ++++a+++    v++DgG+r+  Dv+ Ala GA+ v++G
  KIR65101.1 261 AVRKLDPgVPVAAGNVVTADGVRDLVEAGADIVKVGVGPGamcttRMMTGVgRPQFSAVLDCAAAARElGRHVWADGGVRHPRDVALALAAGASNVMIG 359
                 45554442577777899999999999999999999888777888887777625567888888888887569***************************9 PP

                 HH CS
      FMN_dh 301 Rp 302
                   
  KIR65101.1 360 SW 361
                 65 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1      0.02        41      29     102 ..     226     296 ..     217     309 .. 0.72
   2 !   16.5   0.0   2.3e-06    0.0046      67     105 ..     324     362 ..     307     372 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.02
                   TSHHHHHHHHHHHT-SEEEEEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESS.SSSHHHHHHHHHCT-SEEEES CS
  His_biosynth  29 gdpvelakryeeegadelhvvDldaakegreanldlveeiaeevfipvqvGGG.Irsledveelleagadkviig 102
                   gd+   a ++ e+g+d l+v   d a+ ++e++ ++++++++  +  v v  G + + + v++l+eagad v +g
    KIR65101.1 226 GDVTGKAAALLEAGVDTLVV---DTAHGHQERMMSALRAVRKL-DPGVPVAAGnVVTADGVRDLVEAGADIVKVG 296
                   55556666667777777764...44677777777777766655.7667777777889999999999999966554 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2.3e-06
                   HHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHH CS
  His_biosynth  67 eiaeevfipvqvGGGIrsledveelleagadkviigtaa 105
                   + a+e+  +v+ +GG+r+  dv+ +l aga++v+ig++ 
    KIR65101.1 324 AAARELGRHVWADGGVRHPRDVALALAAGASNVMIGSWF 362
                   467788899***************************985 PP

>> Aldolase  KDPG and KHG aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.1   2.6e-06    0.0053      21      86 ..     227     298 ..     215     309 .. 0.82
   2 ?   -1.2   0.0      0.56   1.1e+03     155     179 ..     337     362 ..     332     367 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.6e-06
                 GHHHHHHHHHHTT--EEEEETT...STTHHHHHHHHHHH-TTSEEEEES--SHHHHHHHHHCT-SEE...EE CS
    Aldolase  21 dalplaeaLvagGlrvlevtlr...teaaldairvlrkerpdllvgaGtvlnaeqlaeakeaGaqfv...vs 86 
                 d++  a aL++ G+ +l v       e  + a+r++rk  p++ v+aG v++a+ + +  eaGa+ v   v 
  KIR65101.1 227 DVTGKAAALLEAGVDTLVVDTAhghQERMMSALRAVRKLDPGVPVAAGNVVTADGVRDLVEAGADIVkvgVG 298
                 7788899********999965411146678999*******************************98743344 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.56
                 SS-.-TTTHHHHHTSTTBS-EEESCC CS
    Aldolase 155 GGi.spanvrdylalpsvlvvgGswl 179
                 GG+ +p +v   la+++  v+ Gsw+
  KIR65101.1 337 GGVrHPRDVALALAAGASNVMIGSWF 362
                 55535677777777777777777776 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.6   5.7e-06     0.011     212     304 ..     275     360 ..     249     362 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.7e-06
                   -STTHHHHHHHHHHTT-SEEEEE-TT---SSEE.HHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SH CS
  Glu_synthase 212 aeagvetiaagvakanadiilidGleGGTGAsp.kssikhaGlPlelalaevdqtlkeeglrdrvsliadGglktgadvvkalalGAdavgigt 304
                      +++ ++  +++a+adi+++ G   G GA   + ++  +G P   a+     + +  +l ++  + adGg++ ++dv++ala GA +v ig+
    KIR65101.1 275 NVVTADGVRD-LVEAGADIVKV-G--VGPGAMCtTRMMTGVGRPQFSAVLDCAAAAR--ELGRH--VWADGGVRHPRDVALALAAGASNVMIGS 360
                   3333344444.88999999998.3..3667754145778899999999988877655..45554..68************************97 PP

>> Peptidase_A4  Peptidase A4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.8e-05     0.096      39     102 ..     216     279 ..     200     280 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.8e-05
  Peptidase_A4  39 ysasawVGiDGaad.tcss.allqaGvdftvdsnGeqsydawyewyPayavdfsglavsaGDsvtv 102
                     ++a VGi G  d t ++ all+aGvd+ v  +   + + +++ + a      g++v+aG++vt+
    KIR65101.1 216 LRVAAAVGING--DvTGKAaALLEAGVDTLVVDTAHGHQERMMSALRAVRKLDPGVPVAAGNVVTA 279
                   3389*******..6566667*********9885666666666666666666666799999988875 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.86   1.7e+03      82     105 ..     105     128 ..      58     129 .. 0.82
   2 ?   10.8   0.1   0.00038      0.75      23      99 ..     188     269 ..     138     275 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.86
  Methyltransf_24  82 eavledleallprlapggvvlfdD 105
                      +++  d  +llp+ + g+vv++d 
       KIR65101.1 105 TDTVGDAIHLLPKRSHGAVVVVDE 128
                      67888999999999999**99996 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00038
  Methyltransf_24  23 agrlvavdhdpgaeeaaalareaglddrvrlikads.......eealaslaagsiDllfiDgghaaeavledleallprlapgg 99 
                      +grlv v + +g  + +a + +  +ddr rl++a +          +a l +  +D l++D  h +++++     + ++l pg 
       KIR65101.1 188 DGRLVGVLTRKG--ALRATLYRPAVDDRGRLRVAAAvgingdvTGKAAALLEAGVDTLVVDTAHGHQERMMSALRAVRKLDPGV 269
                      277777777774..6677777889999999998888777755544444444689************999999999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3457.22
//
Query:       KIR65102.1  [L=583]
Description: acetyl-COA carboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-78  262.1   0.0    6.3e-78  261.1   0.0    1.5  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    4.3e-43  146.3   0.1    8.8e-43  145.3   0.1    1.6  1  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    3.2e-37  126.9   0.0    6.9e-37  125.8   0.0    1.6  1  Biotin_carb_C    Biotin carboxylase C-terminal domain
    2.4e-17   62.5   0.6    1.1e-16   60.5   0.6    2.2  1  Biotin_lipoyl    Biotin-requiring enzyme
    6.5e-09   35.6   0.0    1.3e-08   34.6   0.0    1.4  1  ATP-grasp        ATP-grasp domain
    8.9e-06   25.4   0.0    2.4e-05   24.0   0.0    1.6  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
     0.0002   21.1   0.4      0.001   18.8   0.2    2.3  2  Biotin_lipoyl_2  Biotin-lipoyl like
    0.00021   21.4   1.1     0.0016   18.6   0.1    3.0  3  LAL_C2           L-amino acid ligase C-terminal domain 2
    0.00037   21.2   0.1        1.9    9.2   0.0    3.4  4  HlyD_3           HlyD family secretion protein
  ------ inclusion threshold ------
      0.013   14.8   0.5        2.5    7.3   0.1    2.3  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
      0.094   12.5   0.0        0.2   11.4   0.0    1.5  1  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
       0.12   12.4   0.8       0.39   10.7   0.3    2.1  2  RnfC_N           RnfC Barrel sandwich hybrid domain
       0.14   12.2   0.0       0.27   11.3   0.0    1.4  1  ATP-grasp_3      ATP-grasp domain


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.1   0.0   4.6e-81   6.3e-78       1     209 [.     114     321 ..     114     323 .. 0.99

  Alignments for each domain:
  == domain 1  score: 261.1 bits;  conditional E-value: 4.6e-81
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  Dk++a+++++++++p+vp+++ pv + +e++a+a e+g Pv ikaafg+GG+G +var+ ee+ +l+++a++ea aafg+ +++ve++l++p+++E++
   KIR65102.1 114 DKVTARHIAQRAGAPLVPGTPDPVADHDEVTAFAVEHGLPVAIKAAFGGGGRGLKVARTLEEIPHLFESATREAVAAFGRGECFVERYLDQPRHVEAQ 211
                  9************************************************************************************************* PP

                  EEEETTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HH CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlv 196
                  vl+D++gnv++v++r++slq+r+qk++e+AP+++Ltd++r +++ +a +++re g+ gagtve+l+ + ++ + ++EvNtRl+ve++++e++ G+dlv
   KIR65102.1 212 VLADQHGNVVVVGTRDCSLQRRHQKLVEEAPAPFLTDAQRAQIHDSAKAICREAGYHGAGTVEYLVGA-DGTISFLEVNTRLQVEHPVTEETAGIDLV 308
                  *******************************************************************8.***************************** PP

                  HHHHHHHTT--GC CS
  CPSase_L_D2 197 keaakialgekLe 209
                   e+++ia ge+L+
   KIR65102.1 309 REQFRIADGERLR 321
                  ***********97 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   0.1   6.4e-46   8.8e-43       3     110 .]       2     109 ..       1     109 [. 0.99

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 6.4e-46
                    -EEEE---HHHHHHHHHHHHHTT-EEEEEEEGGGTTSHHHHHSSEEEEEESSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTTT-HHHHHHHHHT CS
  Biotin_carb_N   3 kkvlianrGeiAvriiravrelgietvavyseedanslhvreadeavelgpasasesYlniekivkaakesgadavhpGyGflsEnaefaeaveea 98 
                    +kvlianrGeiAvr+ira+r+ g+ +vavy++ d+++lh+++adea+ lg+++a+e+Yl+i+k++++a ++gadavhpGyGflsEna+fa+av +a
     KIR65102.1   2 RKVLIANRGEIAVRVIRACRDAGLGSVAVYADSDRDALHATLADEAYALGGDTAAETYLRIDKLIAVAAQAGADAVHPGYGFLSENADFAQAVLDA 97 
                    89********************************************************************************************** PP

                    T-EESSS-HHHH CS
  Biotin_carb_N  99 givfiGPsaeal 110
                    g+++iGP+++a+
     KIR65102.1  98 GLTWIGPTPQAI 109
                    *********986 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.0     5e-40   6.9e-37       1     107 [.     334     442 ..     334     443 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 5e-40
                    EEEEESEETTTTTEE--CE-SEEE---STTEEEEE---TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEESS-BSHHHHHHHHH-HHH CS
  Biotin_carb_C   1 eaRinaEdpeknflpssGkvtelelpegpgvRvdsgveegsevspyyDsllaKlivhgetreealarlrraLaelrieGvktnieflrailedeef 96 
                    e+Rin Edp +nflp++G+vt+l+lp+gpgvRvd+g+++g+ +  ++DsllaK+iv+getr+eal+r+rraL+e+++eG++t ++f+r +++d++f
     KIR65102.1 334 EFRINGEDPGRNFLPAPGTVTALRLPTGPGVRVDTGISAGDVIGGNFDSLLAKVIVTGETRTEALERARRALDEMVVEGMATALPFHRLVVRDPAF 429
                    89********************************************************************************************** PP

                    HHT..---TTTCC CS
  Biotin_carb_C  97 akg..eldtkfle 107
                    +++  +++t+++e
     KIR65102.1 430 TAApfTVHTRWIE 442
                    **966789***98 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.6   7.6e-20   1.1e-16       3      73 .]     517     582 ..     515     582 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 7.6e-20
                    EEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl   3 iksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73 
                    ++sPm G++v+     + v++Gd+V++g+ ++++eamKme ++ a+ aG+v+ + +++G+ +++g+++++i
     KIR65102.1 517 LTSPMQGTIVK-----IAVADGDTVAEGDLVVVLEAMKMEQPLHAHRAGTVSGLSAEVGAVITAGSPICTI 582
                    789********.....****************************************************997 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   9.4e-12   1.3e-08      14     159 ..     137     291 ..     133     294 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 9.4e-12
                 ECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEE.EEEETT CS
   ATP-grasp  14 veskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvrsaeGetafypvve.tvqedg 103
                 v++++e+ ++a e glpv +K +  g  G+G +v r  e++++++e +        +++++ vE + +  + + + v  +++G+++++ +    +q++ 
  KIR65102.1 137 VADHDEVTAFAVEHGLPVAIK-AAFGGGGRGLKVARTLEEIPHLFESAtreavaafGRGECFVERYLDQPRHVEAQVLADQHGNVVVVGTRDcSLQRRH 234
                 678899999************.788889****************99999999*9999**************************9988876652445555 PP

                 EEEEEEECEE-.SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS CS
   ATP-grasp 104 ilrlsvapaev.sekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapR 159
                    +  apa++ ++++ +++++ ak i++e g+ G  +vE  v +dg++ + E+  R
  KIR65102.1 235 QKLVEEAPAPFlTDAQRAQIHDSAKAICREAGYHGAGTVEYLVGADGTISFLEVNTR 291
                 555556677761556889*********************************999887 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.7e-08   2.4e-05      28     174 ..     143     290 ..     133     291 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.7e-08
                      HHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-......SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HH CS
  Dala_Dala_lig_C  28 lekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkyd......ekvlvEeai.egreievavlgneklevsevgeivvkkgfydye 114
                      +++   e g+pv +K+a  G   G++ +++ ee+ + +e+a +         + +vE+++ + r +e  vl +++ +v +vg +  +  + + +
       KIR65102.1 143 VTAFAVEHGLPVAIKAAFGGGGRGLKVARTLEEIPHLFESATREAvaafgrGECFVERYLdQPRHVEAQVLADQHGNVVVVGTRDCS--LQRRH 234
                      555667889*************************999998887652222225789*****999*********999999999977654..55677 PP

                      HHHC.TT-EEESS--.--HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEES CS
  Dala_Dala_lig_C 115 akysddkaqlevpak.lekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNt 174
                      +k ++     e pa  l+++++++i++ a+ + +  + +G + v +++ ++g+i + EvNt
       KIR65102.1 235 QKLVE-----EAPAPfLTDAQRAQIHDSAKAICREAGYHGAGTVEYLVGADGTISFLEVNT 290
                      77763.....334432788999**************************************9 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   7.5e-07     0.001       5      35 ..     517     547 ..     515     556 .. 0.89
   2 ?   -2.1   0.0       2.5   3.5e+03      10      32 ..     559     581 ..     552     582 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.5e-07
  Biotin_lipoyl_2   5 IaapvsGrVaqlnVkdGqrVkaGdvLaelDs 35 
                      +++p  G++++++V dG+ V +Gd+ ++l+ 
       KIR65102.1 517 LTSPMQGTIVKIAVADGDTVAEGDLVVVLEA 547
                      57999********************998876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.5
  Biotin_lipoyl_2  10 sGrVaqlnVkdGqrVkaGdvLae 32 
                      +G+V+ l  + G ++ aG  + +
       KIR65102.1 559 AGTVSGLSAEVGAVITAGSPICT 581
                      79999999999999999977766 PP

>> LAL_C2  L-amino acid ligase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.8   5.3e+03      47      70 ..     215     238 ..     213     240 .. 0.78
   2 !   18.6   0.1   1.1e-06    0.0016       5      75 ..     349     410 ..     345     411 .. 0.78
   3 ?   -2.2   0.0       3.5   4.8e+03      12      39 ..     526     536 ..     517     539 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.8
      LAL_C2  47 drlGyviatgdtaeeaeaaaeeaa 70 
                 d +G v+++g     ++++ ++++
  KIR65102.1 215 DQHGNVVVVGTRDCSLQRRHQKLV 238
                 6789*****998877777777766 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.1e-06
      LAL_C2   5 aprpGrlkaveGleearalpgvveveltvkpGdevrpprssgdrlGyviatgdtaeeaeaaaeeaaaeiri 75 
                 a  pG+++a++        pgv +v+  +++Gd+++   +  + l+ vi+tg+t+ ea+++a++a++e  +
  KIR65102.1 349 A--PGTVTALRLP----TGPGV-RVDTGISAGDVIG--GNFDSLLAKVIVTGETRTEALERARRALDEMVV 410
                 3..4777777554....66776.6888899999997..677777**********************99776 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.5
      LAL_C2  12 kaveGleearalpgvveveltvkpGdev 39 
                 +                 ++ v+ Gd+v
  KIR65102.1 526 V-----------------KIAVADGDTV 536
                 4.................4555555555 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       9.5   1.3e+04      63      82 ..      89     108 ..      82     119 .. 0.78
   2 ?   -2.6   0.0       6.7   9.2e+03      70      96 ..     316     342 ..     309     351 .. 0.74
   3 !    7.9   0.1    0.0036         5       2      30 ..     517     545 ..     516     550 .. 0.91
   4 !    9.2   0.0    0.0014       1.9       2      31 ..     554     583 .]     553     583 .] 0.93

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 9.5
      HlyD_3  63 qgsdytlkgkierisptvda 82 
                 ++ +++l++ +++i+pt++a
  KIR65102.1  89 DFAQAVLDAGLTWIGPTPQA 108
                 46667899999999999865 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.7
      HlyD_3  70 kgkierisptvdaktgaykvevslenp 96 
                 +g+  r++ ++++++ a+++++  e+p
  KIR65102.1 316 DGERLRLTEDPTPRGHAIEFRINGEDP 342
                 566667788999999999999887777 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0036
      HlyD_3   2 lrApvdGvvvelnveegevvqagdellei 30 
                 l++p +G++v++ v  g+ v++gd ++ +
  KIR65102.1 517 LTSPMQGTIVKIAVADGDTVAEGDLVVVL 545
                 79**********************99865 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0014
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleii 31 
                 l A ++G+v+ l++e+g v++ag ++ +i+
  KIR65102.1 554 LHAHRAGTVSGLSAEVGAVITAGSPICTIA 583
                 57999*********************9996 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0018       2.5     111     139 ..     517     545 ..     506     550 .. 0.85
   2 ?    6.0   0.0    0.0044         6     107     140 ..     550     583 .]     545     583 .] 0.90

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0018
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 111 vkapisGvVteknvreGqyvqpgdtlfti 139
                 +++p++G++++ +v++G++v +gd ++ +
  KIR65102.1 517 LTSPMQGTIVKIAVADGDTVAEGDLVVVL 545
                 789*******************9987655 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0044
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 107 ktvtvkapisGvVteknvreGqyvqpgdtlftia 140
                  + +++a ++G+V  +++  G ++++g+++ tia
  KIR65102.1 550 MEQPLHAHRAGTVSGLSAEVGAVITAGSPICTIA 583
                 567899*************************997 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014       0.2      44     111 ..     249     318 ..     196     336 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
  ATPgrasp_Ter  44 ekdeelielaerlaeefgldglvnvQvrededg.pkLLEiNpRasGGlgysa.laGvnlpylalklllgl 111
                    +++++ + a+++ +e g +g   v +  ++dg    LE+N+R +    ++   aG++l++  ++ + g+
    KIR65102.1 249 AQRAQIHDSAKAICREAGYHGAGTVEYLVGADGtISFLEVNTRLQVEHPVTEeTAGIDLVREQFRIADGE 318
                   56788999*************************9***********9998886256999999888888885 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.8   5.2e+03      65      88 ..     208     231 ..     203     238 .. 0.75
   2 ?   10.7   0.3   0.00028      0.39      39      82 ..     523     567 ..     513     582 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.8
      RnfC_N  65 vsapvhasvsGtVkaiekrlvahg 88 
                 v a+v a   G+V+ + +r  + +
  KIR65102.1 208 VEAQVLADQHGNVVVVGTRDCSLQ 231
                 578999999999999988877665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00028
      RnfC_N  39 GapakplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiek 82 
                 G+  k+ v+ gd+V +G+++   e+  +  p ha  +GtV  ++ 
  KIR65102.1 523 GTIVKIAVADGDTVAEGDLVVVLEAmKMEQPLHAHRAGTVSGLSA 567
                 6778999***********99988876679***********98765 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019      0.27      33     159 ..     153     293 ..     129     295 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
                  SEEEEESS-------B--SS--TTE...................EEEE---.SEEEEEEEEE.SSSEEEEEEEEEEEET....TEEEEEEES----H. CS
  ATP-grasp_3  33 klvvKprdGaggesvrvveekeeaeaaieeve............lvqefie.GkplSvsllsdgekvlvlavnrqliekaekefvyaGnvtpietel. 116
                  ++ +K + G+gg +  v++  ee    +e+ +             v ++++  +++ +++l+d++ ++v++  r    +++++       +p+ t+  
   KIR65102.1 153 PVAIKAAFGGGGRGLKVARTLEEIPHLFESATreavaafgrgecFVERYLDqPRHVEAQVLADQHGNVVVVGTRDCSLQRRHQKLVEEAPAPFLTDAq 250
                  677899999999999999999998888888778889999999998888885269999*****999999998888887777777888888899998885 PP

                  HHHHHHHHHHHHTTSTT--EEEEEEEEESS..SEEEEEEESS-- CS
  ATP-grasp_3 117 keevvelaeevvekleglaGyvGvDlvlkd.eepyviEvNPRlt 159
                  + ++ + a+ ++++  g  G   v+ ++   + + ++EvN Rl+
   KIR65102.1 251 RAQIHDSAKAICREA-GYHGAGTVEYLVGAdGTISFLEVNTRLQ 293
                  7889999*******9.99999999977654499*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3893.34
//
Query:       KIR65103.1  [L=201]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-11   43.3   0.0    3.6e-11   42.8   0.0    1.2  1  PadR             Transcriptional regulator PadR-like family
    6.2e-05   23.6   0.0     0.0001   22.9   0.0    1.4  1  Vir_act_alpha_C  Virulence activator alpha C-term
  ------ inclusion threshold ------
      0.032   14.4   0.0       0.05   13.8   0.0    1.3  1  HTH_34           Winged helix DNA-binding domain
       0.15   12.6   0.0       0.28   11.7   0.0    1.5  1  HTH_27           Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   8.1e-15   3.6e-11       1      74 [.       3      79 ..       3      80 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 8.1e-15
                HHHHHCC.S-EEHHHHHHHHHCCSTT.-CCTTHHHHHHHHHHHHHTTSEEEEEE-S.TSSS-EEEEEESHCCCHHHH CS
        PadR  1 iLallee.qpsyGyeiikeleelseg.llelseGslYpaLkrLekeglvesewees.gegpprkyYrlTdaGrrela 74
                iL+l++  qp +Gy++++el         ++++Gs+Y aL++L +egl+ +  +e+ g++p+r +Y++T++G +e++
  KIR65103.1  3 ILGLVKWmQPVHGYDVRRELLSWGADkWANVQPGSIYHALRKLGEEGLLREVATEQvGVRPARTTYEITPKGVDEFE 79
                78899777***********9887433145799******************9999999***************99876 PP

>> Vir_act_alpha_C  Virulence activator alpha C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.2e-08    0.0001       3      76 ..      94     171 ..      92     172 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.2e-08
  Vir_act_alpha_C   3 delllKlfaaavldpealieeLerrreeheekLaeyeeieerl....eeargqylvLrrgiryeeawieWcdealelL 76 
                      d+++    ++ +l+++++++ L+ r +  ++  +++++++++     ++ +g   + +  i++ ea+ +Wc+++ +++
       KIR65103.1  94 DPFMAAFAFLPALPRPEAAAALRSRGQVLRAGVESMRASMASAwirdSKPVGVSWTYELWIARGEAEADWCERVADRI 171
                      89999999*************************************9888*************************9876 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.1e-05      0.05      27      75 ..      34      84 ..      29      86 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
      HTH_34 27 tdgnLsvhlkkLekagYi.evdkefkgkkp.rtllriTpeGreafkkyvka 75
                  g ++  l+kL + g + ev  e +g +p rt+++iTp+G ++f+  ++ 
  KIR65103.1 34 QPGSIYHALRKLGEEGLLrEVATEQVGVRPaRTTYEITPKGVDEFETLLRD 84
                56889999999999999844666666655548*************987765 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.2e-05      0.28      27      68 .]      30      74 ..      28      74 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.2e-05
      HTH_27 27 rlnvedshisyslkkLtekGLvertgdeadrre...krvrlTdkG 68
                + nv+  +i  +l+kL e GL+ + + e+ + +   +++++T+kG
  KIR65103.1 30 WANVQPGSIYHALRKLGEEGLLREVATEQVGVRparTTYEITPKG 74
                78899999999***********888877433336889*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1490.67
//
Query:       KIR65104.1  [L=319]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-29  103.1   0.0    2.4e-29  102.6   0.0    1.3  1  ABC_tran  ABC transporter
    2.7e-11   44.0   0.0    4.8e-11   43.2   0.0    1.4  1  DUF4162   Domain of unknown function (DUF4162)
    1.2e-10   41.7   0.0    6.2e-06   26.2   0.0    2.1  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    5.4e-05   23.1   0.0      0.046   13.4   0.0    2.1  2  AAA_15    AAA ATPase domain
    0.00014   21.5   0.0    0.00035   20.3   0.0    1.6  1  SRP54     SRP54-type protein, GTPase domain
     0.0048   17.4   0.0     0.0076   16.8   0.0    1.2  1  AAA_23    AAA domain
      0.007   16.8   0.2      0.014   15.8   0.2    1.5  1  AAA_16    AAA ATPase domain
  ------ inclusion threshold ------
      0.013   15.2   0.5      0.028   14.2   0.2    1.8  2  AAA_30    AAA domain
      0.014   15.6   0.0       0.17   12.1   0.0    2.5  1  SbcCD_C   Putative exonuclease SbcCD, C subunit
      0.024   14.9   0.1       0.21   11.9   0.1    2.1  1  AAA_22    AAA domain
      0.032   14.0   0.1      0.063   13.0   0.1    1.4  1  AAA_29    P-loop containing region of AAA domain
      0.048   14.1   0.1       0.35   11.3   0.1    2.4  2  AAA       ATPase family associated with various cellular acti
       0.23   10.0   0.0        4.4    5.8   0.1    2.0  2  AAA_13    AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.0   1.8e-32   2.4e-29       2     136 ..      26     168 ..      25     169 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 1.8e-32
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 + v+l++ ege+ +++G+nGaGK+t l++la l  p+ G+ ++ g+dl + +  ++r++ig++ q  + ++++t+re+             ++++++e+
  KIR65104.1  26 RGVDLDVAEGEIFGFLGPNGAGKTTTLRMLATLIAPDGGQATIAGADLLR-DPAEVRRRIGYVAQGGSTWDDSTAREElvlharmygiskaDARRRAER 123
                 5799**********************************************.7888999********9**********************8888888*** PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 al+ ++l+e +d+++    +++SgGq++rv++a  ++ +p++++lDEpt
  KIR65104.1 124 ALAAFQLTEYADRKC----KTYSGGQRRRVEIALGIIHDPRIVFLDEPT 168
                 ***************....*****************************9 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   3.5e-14   4.8e-11       1      81 []     222     312 ..     222     312 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 3.5e-14
                 E-HHHHHTTS-SSEEEEE......-------..--.-EEEE-TT.S-EEEEE--.-----------.----EEEEEEEE---HHHHHHHHH CS
     DUF4162   1 GtleeiKrsygknrieve......adaeelleepg.veeveeeg.gelelkled.eeaanellkal.tsgveirsFeeeePsLndIFiekv 81 
                 Gt+  +Kr++ ++ + v+      ++a++ll+++  v ++e+ + g+l+l++++  +a +++l++l ++g+ ++s+e+++PsL+d+F+ k+
  KIR65104.1 222 GTPTGLKREISGEVLLVGldvattGQAAQLLDTEPyVAKLETVDgGGLRLTVDEgATAIPQVLRRLdHAGLALNSIELHRPSLDDVFLTKT 312
                 89999*************999887669999988777****8887799******99***********77*******************9875 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.4e-05     0.047       2      23 ..      38      59 ..      37      97 .. 0.81
   2 !   26.2   0.0   4.5e-09   6.2e-06     252     297 ..     156     198 ..     139     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.4e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldlla 23
                 ++ GpNg+GK++ L+ l  l 
  KIR65104.1 38 FGFLGPNGAGKTTTLRMLATLI 59
                6789************997774 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 4.5e-09
      AAA_21 252 lralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 + ++   +++++DEp +gL+P+  ++ ++ +++l+++g  v++tTH
  KIR65104.1 156 IHDP---RIVFLDEPTTGLDPQSRAHMWDEIRRLRAEGMTVFITTH 198
                 4333...9************************************** PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0     0.002       2.8      28      47 ..      40      59 ..      26      69 .. 0.85
   2 !   13.4   0.0   3.4e-05     0.046     320     364 ..     155     198 ..     142     199 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.002
      AAA_15 28 liGkNnsGKSsilealdlFl 47
                + G+N++GK++ l++l  ++
  KIR65104.1 40 FLGPNGAGKTTTLRMLATLI 59
                88*************98776 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.4e-05
      AAA_15 320 keeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 +  ++ i++++EP + L pq   ++++ +++l  ++   v+itTH
  KIR65104.1 155 IIHDPRIVFLDEPTTGLDPQSRAHMWDEIRRLRAEGM-TVFITTH 198
                 567899******************************7.9****** PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.5e-07   0.00035       6      43 ..      40      77 ..      36      80 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.5e-07
                EEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTT CS
       SRP54  6 lvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaa 43
                ++G++GaGKTttl  La l+  +g ++ ++ aD  R  
  KIR65104.1 40 FLGPNGAGKTTTLRMLATLIAPDGGQATIAGADLLRDP 77
                89********************************9965 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.5e-06    0.0076      15      39 ..      30      55 ..      11      66 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.5e-06
      AAA_23 15 idF.skgltlItGpNGaGKTTildAi 39
                +d  +  ++ + GpNGaGKTT l+ +
  KIR65104.1 30 LDVaEGEIFGFLGPNGAGKTTTLRML 55
                444566799************99876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2     1e-05     0.014      25     103 ..      36     105 ..      19     205 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdql..esaipysalaqalareellrqlldeaesaeleawreklee 103
                 e+  + G+ G GK++ +r+l++ +  dgg ++ + +d l  +           ++ ++ +  +++  ++ + + +re+l  
  KIR65104.1  36 EIFGFLGPNGAGKTTTLRMLATLIAPDGGQATIAGADLLrdP-----------AEVRRRIGYVAQGGSTWDDSTAREELVL 105
                 566789*********************888866666666221...........2222333333333333333333332222 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2     2e-05     0.028      21      68 ..      38      86 ..      20     127 .. 0.78
   2 ?   -2.5   0.0       2.5   3.4e+03      52      65 ..     242     255 ..     237     286 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
      AAA_30 21 avltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvLaeelgi 68
                    Gp G+GKtt+l+ l+ +++ + g+  i+ A   +  +++++ +g 
  KIR65104.1 38 FGFLGPNGAGKTTTLRMLATLIAPDgGQATIAGADLLRDPAEVRRRIGY 86
                5567*****************9999566666666666655555555555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.5
      AAA_30  52 lAptgkaAkvLaee 65 
                 +A tg+aA+ L +e
  KIR65104.1 242 VATTGQAAQLLDTE 255
                 57777888777654 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.17      62      86 ..     157     181 ..     113     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
     SbcCD_C  62 palrlvfLDEAFsklDeesiatlle 86 
                 +++r+vfLDE   +lD++s+a + +
  KIR65104.1 157 HDPRIVFLDEPTTGLDPQSRAHMWD 181
                 569*****************99976 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00015      0.21      12     102 ..      42     205 ..      35     221 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
      AAA_22  12 GesGtGKTtllrrlleqldeeakaee...............................erpevv...fvtlpsstsskdllrellralglelka...... 70 
                 G+ G+GKTt+lr+l+     +  +++                               +r e+v   +++  s+ + +  +++ l a++l   a      
  KIR65104.1  42 GPNGAGKTTTLRMLATLIAPDGGQATiagadllrdpaevrrrigyvaqggstwddstAREELVlhaRMYGISKADARRRAERALAAFQLTEYAdrkckt 140
                 9*************9987555555557888888888855555555555555555555444444445455555555555555555555554444555555 PP

      AAA_22  71 ...............................erlsseellealeqalrarav..ielliiDEaqh 102
                                                 ++s+ ++++ +++   + ++  i    +DEa+ 
  KIR65104.1 141 ysggqrrrveialgiihdprivfldepttglDPQSRAHMWDEIRRLRAEGMTvfITTHYLDEADA 205
                 65555555555555555556666665555555555555555555555555555555555555555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   4.6e-05     0.063      16      50 ..      29      63 ..      20      69 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.6e-05
      AAA_29 16 tieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                ++++ + +++ + Gp+G+GK+T l  +++l+ p+ 
  KIR65104.1 29 DLDVAEGEIFGFLGPNGAGKTTTLRMLATLIAPDG 63
                455554448999************99999999876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00025      0.35       3      35 ..      40      74 ..      38     214 .. 0.62
   2 ?   -1.0   0.0       1.6   2.2e+03      64      73 ..     200     209 ..     177     233 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00025
                EESSTTSSHHHHHHHHHHHH..THEEEEEETTTCS CS
         AAA  3 lyGppGtGKTllakavakel..gvefleisgsell 35
                + Gp G GKT++ + +a+ +  +    +i g++ll
  KIR65104.1 40 FLGPNGAGKTTTLRMLATLIapDGGQATIAGADLL 74
                68***************987332334455555555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
                 EETGGGHHHH CS
         AAA  64 iDEidalaks 73 
                 +DE+dal+ +
  KIR65104.1 200 LDEADALCDR 209
                 6777776655 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0032       4.4      23      39 ..      42      58 ..      35      73 .. 0.87
   2 ?    1.9   0.0     0.049        68     526     571 ..     158     200 ..     153     207 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0032
      AAA_13 23 GwNGaGKTtLSrllrsl 39
                G NGaGKTt  r+l+ l
  KIR65104.1 42 GPNGAGKTTTLRMLATL 58
                99********9999987 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.049
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnl 571
                   +iv++D P   LD +s  +    i+      ++   +fi TH l
  KIR65104.1 158 DPRIVFLDEPTTGLDPQSRAHMWDEIRRLR---AEGMTVFITTHYL 200
                 679****************99999999986...89999******65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2080.31
//
Query:       KIR65105.1  [L=251]
Description: multidrug ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-30  103.9  13.0      9e-30  103.7  13.0    1.1  1  ABC2_membrane    ABC-2 type transporter
      5e-15   55.5  10.8    6.1e-15   55.2  10.8    1.2  1  ABC2_membrane_3  ABC-2 family transporter protein
  ------ inclusion threshold ------
        8.3    5.3  18.0         13    4.6  18.0    1.3  1  DUF3488          Domain of unknown function (DUF3488)


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7  13.0   1.5e-33     9e-30       3     209 ..       7     215 ..       5     216 .. 0.93

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 1.5e-33
  ABC2_membrane   3 ikallkreflqrwrdpslgllwrliqplllalvfgtvfgn.lg..nsedglnr..pgllffsvlflafsaltsvapvferergvlerelvsplysl 93 
                    ++++++r+ ++ +r+p+   ++ ++qp++++l+f  +    l+  ++++++++  pgll+ +++f +  ++++ +++ e + gv+er +v+p+ s+
     KIR65105.1   7 TWLVFQRQTQLLLRNPVWV-FVGVFQPVMYLLLFAPLLKPaLNapTQAEAYKIfvPGLLVLLAIFGG--LFQGFGLIAELRAGVIERSRVTPV-SR 98 
                    6899************666.99****************96422435555554478************..************************.** PP

  ABC2_membrane  94 sayvlakvlvelpvsllqalifllivyflvgldlsrf....flflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm 185
                     a +l++ l +++  l+qa+i++++++++  l++  f    +l++l+l l+al++s+++  ++  ++s++  + l++ v +p lllsG++ p++  
     KIR65105.1  99 LALLLGRSLRDVVSLLAQAVIITVLALLF-ELRV--FigdlLLAYLMLALIALMTSAVSYGVALKVKSEDALAPLMNTVAQPVLLLSGILLPLTFA 191
                    ****************************8.****..66777******************************************************* PP

  ABC2_membrane 186 pkwlqwiaylnPltyavealrsnl 209
                    p+wlq +a++nP+++av++ r+ +
     KIR65105.1 192 PGWLQGVAEWNPFSWAVDGTRALF 215
                    ********************9875 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2  10.8     1e-18   6.1e-15     157     340 ..      54     239 ..      24     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 1e-18
  ABC2_membrane_3 157 snvasflvgliliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilll..afglgipfgnlglllllfllf 248
                      + ++ ++v+ +l++l++++++f  ++++ E + +++e+  v++vs+l+++l++ l d++  l q+++i++l  +f l +++g+l+l+ l++ l 
       KIR65105.1  54 EAYK-IFVPGLLVLLAIFGGLFQGFGLIAELRAGVIERSRVTPVSRLALLLGRSLRDVVSLLAQAVIITVLalLFELRVFIGDLLLAYLMLALI 146
                      4444.455555666666677777889****************************************9998654888789999************ PP

  ABC2_membrane_3 249 glayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffapglgllrlitgd.plweillsliilalfavvyl 340
                      +l+++a++y +   +k++++   l+  v  + ++++g+l pl   p++l+ ++ ++Pf++  +g   l  gd  +  +++ l i a++a++ +
       KIR65105.1 147 ALMTSAVSYGVALKVKSEDALAPLMNTVAQPVLLLSGILLPLTFAPGWLQGVAEWNPFSWAVDGTRALFAGDlGNDKVWQGLSIIAVLAAAGV 239
                      ******************8877777777776666666666666778**********************9777444447766666666655443 PP

>> DUF3488  Domain of unknown function (DUF3488)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  18.0    0.0022        13      24     176 ..      35     191 ..       8     202 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0022
     DUF3488  24 vlllaalllvwrlll.arrraplpsrwlllllallav.allllsygtllgrdagv...alLvlllalKllElrsrRDalvllllgffllatsflfsqsl 117
                 +lll+a ll    +l a ++a+  + ++  ll+lla+ ++l+  +g +  + agv   + ++ +  l ll  rs RD++ ll+ +++++++++lf+  +
  KIR65105.1  35 YLLLFAPLLK--PALnAPTQAEAYKIFVPGLLVLLAIfGGLFQGFGLIAELRAGVierSRVTPVSRLALLLGRSLRDVVSLLAQAVIITVLALLFELRV 131
                 2222222222..211122333333336668888888878888888888885555533334555666777888*************************** PP

     DUF3488 118 lfalylllalllllaalvalh.asasapslaralrlalkllllalPlalvLFllfPRlqg 176
                 ++  +ll++l+l+l+al+  + +   a ++++   la ++   a P++l+  +l+P + +
  KIR65105.1 132 FIGDLLLAYLMLALIALMTSAvSYGVALKVKSEDALAPLMNTVAQPVLLLSGILLPLTFA 191
                 999888888888888887776533445555555555555555566666665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1682.35
//
Query:       KIR65106.1  [L=217]
Description: SAM-dependent methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-49  167.2   0.0    3.3e-49  166.9   0.0    1.0  1  Methyltransf_3   O-methyltransferase
    3.1e-16   60.3   0.0    5.3e-16   59.6   0.0    1.4  1  Methyltransf_24  Methyltransferase domain
    0.00013   22.6   0.0    0.00024   21.8   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
     0.0024   17.6   0.0     0.0037   17.0   0.0    1.2  1  GCD14            tRNA methyltransferase complex GCD14 subunit
  ------ inclusion threshold ------
      0.028   14.2   0.0      0.037   13.8   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
      0.095   13.4   0.0       0.21   12.2   0.0    1.7  1  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.9   0.0   1.1e-52   3.3e-49      10     210 ..      24     215 ..      18     217 .] 0.95

  Alignments for each domain:
  == domain 1  score: 166.9 bits;  conditional E-value: 1.1e-52
                     -HHHHHHHHHTTTST..TGGGS--HHHHHHHHHHHHHHT--EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEE CS
  Methyltransf_3  10 hellkeLreatakktd.lsemevsvdegqfLslLvklvnakrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvaekiel 103
                     +e++++L+e+t       ++m+v+++++ fL++L +lv+a+r +e+G+ftG s La+a +l e G++++ di  e++++a++++ +agv+++iel
      KIR65106.1  24 DEVMRDLVEETLAALPaEARMQVAPEQAAFLTFLTRLVGARRAVEVGTFTGLSSLAIARGLAEGGRLTCFDISAEYTDVARRYWARAGVDDRIEL 118
                     689********87655499**************************************************************************** PP

                     EES-HHHHHHHHHTSSS---EEEEEE-S-GGGHHHHHHHHHHTEEEEEEEEEE-TTGGGGGG-SS--SHHHHH.....HHHHHHHHTT-TTEEEE CS
  Methyltransf_3 104 iegdalkvLeelvkdkklpefDfifvDaDkssyvnyyeklleLvkvGgliaiDntLWeGkvveeddeeakalreyravllelnkklaeDprveis 198
                     + g+a  +L el  +    ++Df+f+DaDk  y+ y+ +l+  ++ Gg++a+DntL  G v+++ +   +a++        +n ++ +D rve +
      KIR65106.1 119 RIGPAGDTLRELPYER---HLDFAFIDADKVGYPVYWAELVPRMRPGGIVAVDNTLRGGRVLAPSNADDRAVA-------AFNDEVMADVRVEPV 203
                     *************999...5********************************************888888777.......8************** PP

                     EE-SBT-EEEEE CS
  Methyltransf_3 199 llsvgDGitLvr 210
                     ll++ DG+tL+r
      KIR65106.1 204 LLPIADGLTLAR 215
                     **********98 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   1.8e-19   5.3e-16       1     106 []      67     170 ..      67     170 .. 0.92

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 1.8e-19
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpg.aeeaaalareaglddrvrlikadseealasla.agsiDllfiDgghaaeavledleall 92 
                      vE+G++ G s+l+++r l + g  rl+++d  ++    a++++++ag+ddr++l+ +++ ++l++l  ++  D++fiD++ ++  v++    l 
       KIR65106.1  67 VEVGTFTGLSSLAIARGLAEGG--RLTCFDISAEyTDVARRYWARAGVDDRIELRIGPAGDTLRELPyERHLDFAFIDADKVGYPVYW--AELV 156
                      8*******************99..5******99544446677777***********************99**********99999998..899* PP

  Methyltransf_24  93 prlapggvvlfdDi 106
                      pr++pgg+v +d++
       KIR65106.1 157 PRMRPGGIVAVDNT 170
                      ************86 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   7.9e-08   0.00024       2      70 ..      67     141 ..      66     163 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 7.9e-08
                      EEET-TTSHHHHHHHCTS..TSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBC....CGBSSSTTTEEEEEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl..gkakvtgvDiseemleaareraeeegl..nvefvqgda....edlpfedgsfDlvvs 70 
                      +++G+ tG  +la+a+ l  g +++t++Dis+e+ + ar+  +++g+  ++e++ g a    ++lp+e  + D+ ++
       KIR65106.1  67 VEVGTFTGLSSLAIARGLaeG-GRLTCFDISAEYTDVARRYWARAGVddRIELRIGPAgdtlRELPYER-HLDFAFI 141
                      689999**********99844.***************************99998877754346677664.7887776 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.2e-06    0.0037      30      96 ..      52     118 ..      35     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.2e-06
       GCD14  30 sliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtv 96 
                 +++++  +l    ++ve Gt +g  s aiar +a  G+l  f+  ++ ++ ar  + + ++++ + +
  KIR65106.1  52 AFLTFLTRLVGARRAVEVGTFTGLSSLAIARGLAEGGRLTCFDISAEYTDVARRYWARAGVDDRIEL 118
                 67777788888899****************************************9999999988766 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.2e-05     0.037       7      81 ..      66     142 ..      61     189 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdiee.lekl.ledekfDlilsn 81 
                       +++G+ tG  ++++a+ l ++++++ +Dis+e   +Ar   ++ g+d ++e+++g++ + l +l +e +  D+ + +
       KIR65106.1  66 AVEVGTFTGLSSLAIARGLAEGGRLTCFDISAEYTDVARRYWARAGVDdRIELRIGPAGDtLRELpYE-RHLDFAFID 142
                      6789999**********9999******************************************99999.788887765 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.1e-05      0.21       2      62 ..      68     136 ..      67     167 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.1e-05
                      EET-TTSHHHHHHH...HTTSEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCC....TSS-TT-E CS
  Methyltransf_11   2 dvGcGtGrlaeala...krgarvvgvDlskemlklakekaseegl..kvefvvadaek....lpfednsf 62 
                      +vG+ tG+ + a+a     g+r++++D+s+e +++a++   ++g+  ++e++ + a +    lp+e    
       KIR65106.1  68 EVGTFTGLSSLAIArglAEGGRLTCFDISAEYTDVARRYWARAGVddRIELRIGPAGDtlreLPYER-HL 136
                      78888999999999655555****************9999998888878887777765333355554.55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1490.62
//
Query:       KIR65107.1  [L=222]
Description: septum formation inhibitor Maf [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-50  169.4   0.0    6.6e-50  169.2   0.0    1.0  1  Maf         Maf-like protein
  ------ inclusion threshold ------
       0.25   11.0   0.0       0.37   10.5   0.0    1.3  1  MAF_flag10  Protein of unknown function DUF115


Domain annotation for each model (and alignments):
>> Maf  Maf-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.2   0.0   7.4e-54   6.6e-50       1     165 [.       8     195 ..       8     196 .. 0.95

  Alignments for each domain:
  == domain 1  score: 169.2 bits;  conditional E-value: 7.4e-54
                 EEEEE---HHHHHHHHCT-..EEEE------.......HHHHHHHHHHHHHHHHH..........TCEEEEEEEEEE...CE---SSHHHHHHHHHHHT CS
         Maf   1 kliLASaSprRkelLeqlg..fevvpsdvde.......aeelvlrlAeaKaeava..........alvigaDtvvvl...ilgKPkdeeealemLkkls 77 
                 +l+LASaSp+R++lL+ +g  ++v++s vde       ae+l+l+lA+ Ka+av+          +lv+g+D+v+++   ilgKP+de++a++ +++++
  KIR65107.1   8 RLVLASASPARRKLLHAAGiePDVLVSGVDEsqvvserAEDLCLELARLKAQAVVgrlrpsaderTLVLGCDSVLAFdgeILGKPADEADATRRWERMR 106
                 69***************99878*********9******9999**********************999*********97766****************** PP

                 TSEEEEEEEEEEEE..EEE..EEEEEEEEEE----HHHHHHHHHCTSGCCSTTS--TTCGGGGGCEEEECS-HHHHHT--HHHHHHHHCC CS
         Maf  78 grthevvTgvavlk..ekevksfvettevtfkelsdeeieaYvatgepldkAGaygiqgllglalverieGsysnVvGLPlaellelLke 165
                 grt  ++Tg+++++  ++++++ v +t+v+f+e+sdeei+aYvatgepl +AGa++i+gl g+a++e ++G++ +VvGL+l  l++lL e
  KIR65107.1 107 GRTGVLHTGHCLIDviHETRAEAVASTTVRFAEVSDEEIAAYVATGEPLAVAGAFTIDGL-GGAFLEGVDGDPGTVVGLSLPLLRRLLGE 195
                 ****************667889999**********************************9.666***********************976 PP

>> MAF_flag10  Protein of unknown function DUF115
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.2e-05      0.37      52      84 ..      10      44 ..       3      62 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.2e-05
  MAF_flag10 52 viiaadtalka.LlkegIkPDivvs.lDpqeasye 84
                v+ +a+ a ++ L+ +gI+PD+ vs +D++++  e
  KIR65107.1 10 VLASASPARRKlLHAAGIEPDVLVSgVDESQVVSE 44
                5556666655515678*************776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1835.12
//
Query:       KIR65108.1  [L=153]
Description: hypothetical protein TK50_06250 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0074   16.1   0.0     0.0085   15.9   0.0    1.1  1  TFCD_C    Tubulin folding cofactor D C terminal
  ------ inclusion threshold ------
      0.011   14.4   0.0      0.012   14.3   0.0    1.1  1  MutL      MutL protein
       0.12   12.3   0.1       0.16   11.9   0.1    1.2  1  T2SSF     Type II secretion system (T2SS), protein F


Domain annotation for each model (and alignments):
>> TFCD_C  Tubulin folding cofactor D C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-06    0.0085      56     112 ..      51     107 ..      17     124 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-06
      TFCD_C  56 edlnwnspsevfprlvqLLqlpeyresvleGlvvSvGglteslvkassqaLleylke 112
                  +++  +p+++f +lvq+L+ ++  ++  + +v SvGg t +l  a++   ++y ++
  KIR65108.1  51 MKAQIPNPADAFVELVQFLKAHNETQQATATMVWSVGGATGHLAAAAGRIATQYADS 107
                 455788*******************************************99999943 PP

>> MutL  MutL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     2e-06     0.012     210     264 ..      41      96 ..      21     117 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2e-06
        MutL 210 akglskleelvsaeimpTPaAvlkavellae.eeekglgdllvvDvGGaTTdvhsv 264
                 a++ls + + ++a+i   ++A++++v++l+  +e++++  ++v  vGGaT  + ++
  KIR65108.1  41 APHLSYIADDMKAQIPNPADAFVELVQFLKAhNETQQATATMVWSVGGATGHLAAA 96 
                 8999999999999999999***********976777899***********998877 PP

>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.8e-05      0.16      21      92 ..      31     108 ..      21     118 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.8e-05
                 HHHHHHSSHHHHHHHHHHHHHHHTTS.SHHHHHC......T-TT.TS.-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH CS
       T2SSF  21 llaeeaengplaeelkriarrlraGg.slseale......rtpssef.pelvvqlirageeggnLaevLerlaeyleeer 92 
                  l++e  ++ +a+ l++ia++++a + ++++a+       +  ++e    +++++ ++g ++g+La++  r+a+++ +  
  KIR65108.1  31 KLQAEV-ERNYAPHLSYIADDMKAQIpNPADAFVelvqflKA-HNETqQATATMVWSVGGATGHLAAAAGRIATQYADSD 108
                 455555.9999***************7889999988888633.3588799**************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1073.54
//
Query:       KIR65109.1  [L=70]
Description: hypothetical protein TK50_06255 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.8e-14   52.3  12.6    7.9e-14   52.1  12.6    1.0  1  ACC_epsilon  Acyl-CoA carboxylase epsilon subunit


Domain annotation for each model (and alignments):
>> ACC_epsilon  Acyl-CoA carboxylase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1  12.6   4.4e-18   7.9e-14       1      61 []       6      63 ..       6      63 .. 0.95

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 4.4e-18
  ACC_epsilon  1 pllrVvrGnPtdeELAALtaVLaaraaaaaaaaaepapagsaWarperrlrrplrpgpgaW 61
                 pl+rV+rG Pt+eELAAL+ V++ar++++aa+a++++    aWar  r  ++ l+ gpgaW
   KIR65109.1  6 PLFRVTRGVPTAEELAALVGVIVARTRPTAAPAPAAP---GAWARSGRSRGTALAAGPGAW 63
                 89****************************8888876...79******************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 536.19
//
Query:       KIR65110.1  [L=793]
Description: protein kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-44  152.4   0.0      2e-44  151.9   0.0    1.1  1  Pkinase         Protein kinase domain
    1.4e-26   93.3   0.0    1.9e-26   92.9   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0002   21.4   1.3    0.00096   19.1   0.2    2.4  2  APH             Phosphotransferase enzyme family
     0.0075   15.9   0.0      0.011   15.3   0.0    1.2  1  RIO1            RIO1 family
  ------ inclusion threshold ------
      0.079   11.7   0.0       0.14   10.9   0.0    1.4  1  Pkinase_fungal  Fungal protein kinase
       0.11   11.8   0.0       0.22   10.9   0.0    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.9   0.0   6.8e-48     2e-44       1     256 [.      13     261 ..      13     267 .. 0.86

  Alignments for each domain:
  == domain 1  score: 151.9 bits;  conditional E-value: 6.8e-48
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.....HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.....kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgs 94 
                 y+ ++ lG+G++G+V ka+++  ++ vA+K++        +e     ++ lrE + +++l+h n+vr+++v++++ + ++v+eyv  ++l+d + ++g 
  KIR65110.1  13 YRLISPLGQGGMGRVWKARDEVLHRDVAIKELVPPPSLTPEErremrERSLREARAIARLNHINVVRIFDVLRTDGDPWIVMEYVASKSLQDTIAEDGP 111
                 567889************************986543322222234459*************************************************** PP

                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHH CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyell 191
                 +++++a +i   +l +l+  H++g++HrD+Kp N+L+ ++g + +tDFGla+     +   +  + g++ Y+APE  ++   ++++D+WslG +ly  +
  KIR65110.1 112 VTPAKAVEIGLGVLGALKAAHKAGVMHRDVKPGNVLMGTDGRVVLTDFGLATIPGDPNVtrTGMVLGSPAYIAPERARDGTAGPEADLWSLGATLYAAV 210
                 ****************************************************99887766678899********************************* PP

                 HSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHH CS
     Pkinase 192 tgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltae 256
                  gk p++   + +     + +   ++  l   +e +p +      +k +l+ ll+kdp +R+ ae
  KIR65110.1 211 EGKSPYA---RPS----AIAT---LAA-L--ATEPMPPP-RNAGPLKPVLNGLLRKDPAERIDAE 261
                 *******...222....2223...111.2..22344444.4467899999999999999999876 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0   6.3e-30   1.9e-26       3     250 ..      15     258 ..      13     266 .. 0.88

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 6.3e-30
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE......STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl......keeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrk 94 
                  l + lG+G  G+V++++ +      + +Va+K l      + e ++e +e+ l+ea+ + +l+h n+v++  v   ++  +iv+eyv++ +L++ + +
   KIR65110.1  15 LISPLGQGGMGRVWKARDE----VLHRDVAIKELvpppslTPEERREMRERSLREARAIARLNHINVVRIFDVLRTDGDPWIVMEYVASKSLQDTIAE 108
                  5678************988....7889999998844322244666666888999*********************9999******************9 PP

                  TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHH CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfG 192
                  +   ++t  + +++ l v  +++  ++  ++Hrd+   NvL+ ++  v ++DfGLa     d + ++++    +  ++apE  ++++   ++D Ws G
   KIR65110.1 109 D--GPVTPAKAVEIGLGVLGALKAAHKAGVMHRDVKPGNVLMGTDGRVVLTDFGLATIP-GDPNVTRTGMVLGSPAYIAPERARDGTAGPEADLWSLG 203
                  7..9****************************************************965.999999999999************************** PP

                  HHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS- CS
  Pkinase_Tyr 193 vllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRp 250
                   +l+  ++ g+spy++ ++  +l++l + + ++ p+++   l+ +++  +++dp+eR 
   KIR65110.1 204 ATLYAAVE-GKSPYARPSAIATLAALAT-EPMPPPRNA-GPLKPVLNGLLRKDPAERI 258
                  ****9999.*****99998888888765.456666654.4577777777777777775 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   3.2e-07   0.00096      77     198 ..      45     164 ..      21     168 .. 0.68
   2 ?   -2.4   0.1       1.2   3.6e+03     143     161 ..     252     271 ..     219     282 .. 0.60

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.2e-07
                 ---EE-SSHHHHHHHHHHHHHHHHHHCCHHCH..-STTTB-SHHCHTCCHH...HHHHCHHHCCCGCCTCC.HHHHHHHHHHHHHHHH--SSS-EEEE- CS
         APH  77 vpgrsllrklsaaqlpellealgeflaalhqvd.paalpladflaqdlell...rqlesatarllaselld.lleeleeqvlaalaallpgelptvllH 170
                 vp+ sl++    ++++e+ e+  +  +a+ ++   +  + +d l++d +++   ++++s   ++  +e ++   +++ e  l  l al + + +++++H
  KIR65110.1  45 VPPPSLTP----EERREMRERSLREARAIARLNhINVVRIFDVLRTDGDPWivmEYVASKSLQDTIAEDGPvTPAKAVEIGLGVLGALKA-AHKAGVMH 138
                 44444444....666666666666666666666666777777777766655555677777665555555555555555546777777777.488***** PP

                 SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 171 gDlhpgNllvdpddgrvtGviDfedagl 198
                 +D +pgN+l+  +dgrv  + Df++a++
  KIR65110.1 139 RDVKPGNVLMG-TDGRV-VLTDFGLATI 164
                 ***********.77887.577***9985 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
                 C.HHHHHHHHHHHHHHHH-- CS
         APH 143 d.lleeleeqvlaalaallp 161
                 + ++e+++++v+++l++ ++
  KIR65110.1 252 KdPAERIDAEVAERLLRKAA 271
                 12345666666666666555 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.7e-06     0.011      50     159 ..      57     169 ..      49     173 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.7e-06
                 HHHHHHHHHHHHHHHHHHTT.--S--EEEEETT.EEEEE--EETTEEGGBHHHCG.-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EE CS
        RIO1  50 lvklwaekEfrnLkrleeag.vpvPkpielkrh.vlvmefigedgvaapklkdve.eeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kv 144
                  ++    +E r++ rl++++ v++ +++    +  +vme++ ++ ++ +  +d + + ++a e+   vl +++++  +ag+ H D+   Nvl+ +d +v
  KIR65110.1  57 EMRERSLREARAIARLNHINvVRIFDVLRTDGDpWIVMEYVASKSLQDTIAEDGPvTPAKAVEIGLGVLGALKAAH-KAGVMHRDVKPGNVLMGTDgRV 154
                 45666779999999999998778888888875438*******99999999999997799***********877776.****************9999** PP

                 EE--GTTEEETTSTT CS
        RIO1 145 viIDvsQaveldhpn 159
                 v+ D++ a+ + +pn
  KIR65110.1 155 VLTDFGLATIPGDPN 169
                 ****99887766665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.6e-05      0.14     316     382 ..     125     184 ..      93     202 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.6e-05
  Pkinase_fungal 316 IkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFma 382
                     + +++  + kag++HrD+  +N+l+       + + +L D+ la+  +d++ ++  +   G ++++a
      KIR65110.1 125 LGALKAAH-KAGVMHRDVKPGNVLMG-----TDGRVVLTDFGLATIPGDPNVTR-TGMVLGSPAYIA 184
                     55666667.9****************.....78999999999999888755554.355566666555 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.2e-05      0.22      57     166 ..      61     159 ..      54     163 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.2e-05
         Kdo  57 ravrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 r+ rE r++ rL++  ++v ++  + + + ++     +++e ++  ++L+d +a+   +  ++  ++   v  + +  h+agv+H+d+ + n+l+ +++
  KIR65110.1  61 RSLREARAIARLNH--INVVRI--FDVLRTDGD--PWIVMEYVAS-KSLQDTIAEDGPVTPAKAVEIGLGVLGALKAAHKAGVMHRDVKPGNVLMGTDG 152
                 66666666666654..444443..334444443..2378888875.67888888622233333333333333456889*******************99 PP

         Kdo 156 eeeaeiwliDl 166
                     +++l D+
  KIR65110.1 153 ----RVVLTDF 159
                 ....9999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 5420.63
//
Query:       KIR65111.1  [L=75]
Description: hypothetical protein TK50_06265 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0055   16.8   2.1     0.0065   16.6   2.1    1.0  1  FxsA      FxsA cytoplasmic membrane protein
  ------ inclusion threshold ------
       0.02   14.8   0.4      0.024   14.5   0.4    1.1  1  SLATT_1   SMODS and SLOG-associating 2TM effector domain 1
      0.044   13.4   2.6      0.054   13.1   2.6    1.0  1  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> FxsA  FxsA cytoplasmic membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   2.1   1.1e-06    0.0065       9      66 ..      12      71 ..       8      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.1e-06
        FxsA  9 lEilllvlvasaiGvlatllllvltallGallvrrqgrralrrlqekla..qgelpaeel 66
                l +++lv++++++ +l+ + l vl a++G++ v  +g+ a+r ++++    ++ lpa+++
  KIR65111.1 12 LALWMLVALGDVVLLLVSVGLPVLFAMFGVVAVTVAGVAAWRLTRRATVvrEDALPARTV 71
                668**************************************9777765422566677765 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.4   4.1e-06     0.024      21      74 ..       4      58 ..       2      64 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.1e-06
     SLATT_1 21 eraakrwrlllillellalllaalrafgelsv..dlvgvlaavaaallaWlelkqy 74
                +r+  r rl+l +l +l+ ++ +l  +g l+v  +++gv+a+ +a ++aW  +++ 
  KIR65111.1  4 RRRDARPRLALWMLVALGDVVLLLVSVG-LPVlfAMFGVVAVTVAGVAAWRLTRRA 58
                6778888888888888887777777565.333369***************988876 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   2.6   9.1e-06     0.054       5      67 ..      12      69 ..       9      73 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.1e-06
     DUF4131  5 lalvllalllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsqllesgq 67
                lal++l++l+ + lll+ +      +  +++++++++++++++a+r  ++++   +++l+  +
  KIR65111.1 12 LALWMLVALGDVVLLLVSV----GLPVLFAMFGVVAVTVAGVAAWRLTRRATVVREDALP-AR 69
                6789999999999999886....68**************************999988887.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.33s 00:00:00.84 Elapsed: 00:00:00.52
# Mc/sec: 430.89
//
Query:       KIR65112.1  [L=250]
Description: hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-51  173.2   1.6    7.3e-51  172.9   1.6    1.1  1  Glyco_hydro_25  Glycosyl hydrolases family 25


Domain annotation for each model (and alignments):
>> Glyco_hydro_25  Glycosyl hydrolases family 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.9   1.6   4.1e-55   7.3e-51       1     178 []      41     227 ..      41     227 .. 0.97

  Alignments for each domain:
  == domain 1  score: 172.9 bits;  conditional E-value: 4.1e-55
  Glyco_hydro_25   1 iDvssyqgdidwqkvkasGvsfviiKaTeGtsyvdptfkeqvanaraaglkvgaYhFarpvnsstakaeadyFlsnvq..kldastlplvlDvE. 92 
                     +Dvs+yqg+i+w +v+++G++f++iKaTeGtsy+dp f+ ++ n+ +ag+++gaYhFarp n s+++++a+y +sn    ++d+ tlp++lDvE 
      KIR65112.1  41 VDVSHYQGSINWTSVRNAGIEFAFIKATEGTSYKDPNFNANYVNSYNAGVIRGAYHFARP-NISSGATQANYLASNGGawSADSRTLPAALDVEa 134
                     7***********************************************************.8***************99**************** PP

  Glyco_hydro_25  93 ......ktssaekaaateeikkfldevkkqtGkkpviYtsksflknn.llesqliaeyplWiaeyakkepkkyksmkkwafWQytssgsvpgv 178
                           ++++ +++ ++++i+ fl++++++tG+ +viYt++s+++++ +  +   a++plW+a++++++    ++   w+fWQyt sgsv+g+
      KIR65112.1 135 npysggTCYGLSTSGMRSWIQDFLNTYRSRTGRYAVIYTTTSWWNQCtGSWTGPWANHPLWLARWSSTPGTLPAGAPVWSFWQYTASGSVSGI 227
                     ***********************************************66667777999**********8888889***************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.54
# Mc/sec: 1384.23
//
Query:       KIR65113.1  [L=247]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-64  215.1  15.3    9.2e-64  214.8  15.3    1.0  1  Peptidase_M50B  Peptidase M50B-like
  ------ inclusion threshold ------
      0.084   13.2   0.4      0.084   13.2   0.4    2.6  3  DUF3267         Putative zincin peptidase


Domain annotation for each model (and alignments):
>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.8  15.3     1e-67   9.2e-64       2     199 ..      28     230 ..      27     231 .. 0.98

  Alignments for each domain:
  == domain 1  score: 214.8 bits;  conditional E-value: 1e-67
  Peptidase_M50B   2 laivlalvvlwnkpllrpfkllvvffHElGHalaalLtGgrvkgielhsdesGvtvtrg.pgglgqiltllaGYlgpallGlllillsasgkarl 95 
                     +++++al+v+  +  +r++++ v+++HE+GHalaalLtG+r++gi+lhsd+sG+t+++g p+g+g+iltllaGY++p+l+Gl++++l+  ++++l
      KIR65113.1  28 VTAAVALAVVSTRLPWRIARNAVTIAHEGGHALAALLTGRRLHGIRLHSDTSGLTLSAGrPTGPGMILTLLAGYVAPSLVGLAGAWLLGGNRITL 122
                     67899****************************************************************************************** PP

  Peptidase_M50B  96 llvllvllllvllllvrnlfglvlllllgallllvlllaedelleflllflgvflllgsvrdiddli....rrkapesDasqlakltgvpallwv 186
                     ll+++v+lll++l++vrn fg v+ll++g+++l+v+++a++++++++++  ++flllg+vr++++l+    r++ pesDa+qla+lt++p l+wv
      KIR65113.1 123 LLWIAVALLLAMLVMVRNAFGAVSLLATGGVVLAVSWYASPDVQAAFAWTSVWFLLLGGVRPVVELQrlrsRGRMPESDADQLARLTPFPPLFWV 217
                     ***************************************************************999777778999******************** PP

  Peptidase_M50B 187 vlwllvslaflal 199
                     +l++lv+l++l++
      KIR65113.1 218 ALFALVNLLALVV 230
                     **********987 PP

>> DUF3267  Putative zincin peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   9.3e-06     0.084       4      89 ..      50     132 ..      48     146 .. 0.76
   2 ?   -0.6   0.1      0.18   1.6e+03      62      83 ..     152     173 ..     136     183 .. 0.56
   3 ?   -2.4   1.0      0.64   5.7e+03      67      82 ..     214     230 ..     206     241 .. 0.44

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.3e-06
     DUF3267   4 lvilHEllHglffklfgkkpkkkvkfgiklliayatsseallskkqfiiillaPfvllgilllllalllpsstlllllllalnaag 89 
                 + i HE+ H+l+  l g+   +++++  +    ++ s + + +   +i+ lla  v  ++++l+ a+ll  +  +lll++a+ +++
  KIR65113.1  50 VTIAHEGGHALAALLTGR-RLHGIRLH-SDTSGLTLSAGRP-TGPGMILTLLAGYVAPSLVGLAGAWLLGGNRITLLLWIAVALLL 132
                 6799**********9755.45777773.3667888899999.999***********************996555444444333333 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.18
     DUF3267  62 gilllllalllpsstlllllll 83 
                 g++l++ +++ p+ + ++++ +
  KIR65113.1 152 GVVLAVSWYASPDVQAAFAWTS 173
                 5566666666666655433333 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.64
     DUF3267  67 llalllpsstl.lllll 82 
                 l +++l   ++ l+l++
  KIR65113.1 214 LFWVALFALVNlLALVV 230
                 33333333222233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       841  (0.0469072); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 1620.29
//
Query:       KIR65114.1  [L=166]
Description: RNA polymerase sigma24 factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-14   53.6   0.2    1.3e-14   53.6   0.2    1.7  2  Sigma70_r4_2     Sigma-70, region 4
    7.7e-11   41.6   3.5    1.1e-10   41.1   2.9    1.6  1  Sigma70_r2       Sigma-70 region 2
    7.4e-08   31.8   0.2    7.4e-08   31.8   0.2    1.8  2  Sigma70_r4       Sigma-70, region 4
    6.7e-05   22.8   0.0    9.2e-05   22.3   0.0    1.3  1  Phage_antitermQ  Phage antitermination protein Q
  ------ inclusion threshold ------
      0.023   14.6   0.2      0.033   14.1   0.2    1.3  1  Sigma70_ECF      ECF sigma factor
      0.033   13.4   0.0      0.047   12.9   0.0    1.1  1  FANCF            Fanconi anemia group F protein (FANCF)
      0.034   14.6   0.2        0.5   10.9   0.1    1.9  2  DUF3106          Protein of unknown function (DUF3106)
       0.17   12.2   2.6       0.26   11.6   0.1    2.5  3  TPR_12           Tetratricopeptide repeat
       0.17   12.1   0.4       0.17   12.1   0.4    2.8  4  TPR_2            Tetratricopeptide repeat
       0.39   11.5   0.2       0.39   11.5   0.2    4.0  5  TPR_4            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       2.1   3.8e+03      44      52 ..      73      81 ..      67      83 .. 0.73
   2 !   53.6   0.2   7.1e-18   1.3e-14       3      54 .]     100     151 ..      98     151 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.1
                  HHHHHHHHH CS
  Sigma70_r4_2 44 ksrlsRArk 52
                  +s  sRAr+
    KIR65114.1 73 RSLRSRARA 81
                  788899997 PP

  == domain 2  score: 53.6 bits;  conditional E-value: 7.1e-18
                   HHHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   3 alrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   a+ +al++Lpe+qr+++ l+yl g++  E+A+++  ++gtVk rlsR+r +L
    KIR65114.1 100 AVVAALRQLPEEQRTALALYYLLGMPVTEVARETAAPVGTVKARLSRGRTAL 151
                   7889*********************************************987 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   2.9   6.2e-14   1.1e-10       2      70 ..      11      77 ..      10      79 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 6.2e-14
                HHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2  2 verylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70
                ++  +++++++++ l+g+ a+a+D vQea++r+w+++ +   +   +++aw+  +a + a  r+R+ r+
  KIR65114.1 11 YRGSRQRLLGFVYALTGNLAEAQDAVQEAYIRAWQRWSTVA-GYD-DPEAWVRVVASRIAVSRWRSLRS 77
                6777899*******************************999.999.*******************9775 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.5       1.3   2.3e+03      37      50 .]      72      85 ..      65      85 .. 0.77
   2 !   31.8   0.2   4.1e-11   7.4e-08       1      48 [.     104     151 ..     104     152 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.3
                HHHHHHHHHHHHHH CS
  Sigma70_r4 37 VrqiekrAlrkLRk 50
                 r++ +rA+  LR+
  KIR65114.1 72 WRSLRSRARAYLRH 85
                58888999998886 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 4.1e-11
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 aL++Lpe++r+ l l+++ g++  E++++   + ++V+ +++r++  L
  KIR65114.1 104 ALRQLPEEQRTALALYYLLGMPVTEVARETAAPVGTVKARLSRGRTAL 151
                 89*****************************************99877 PP

>> Phage_antitermQ  Phage antitermination protein Q
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   5.1e-08   9.2e-05      55     115 ..     100     160 ..      45     162 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 5.1e-08
  Phage_antitermQ  55 gcvarLkkkrpeelellvdyYvfgvskraiarklkisekevrkklqkaegfiegclaaldv 115
                      ++va L++  +e+ + l  yY+ g++ +++ar+     ++v+ +l  ++  ++g la++d+
       KIR65114.1 100 AVVAALRQLPEEQRTALALYYLLGMPVTEVARETAAPVGTVKARLSRGRTALAGLLAVSDL 160
                      4799999999***********************************************9886 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   1.8e-05     0.033      53     178 ..      36     150 ..       7     156 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-05
  Sigma70_ECF  53 vfeaflrlvdkekfpdlsgrdhlfalaaeamrrilidhaRrrkrqkRGGdvvraeldeeedsvdsdspdelleLdealerllsldpeqarlvelrkle 150
                  v ea++r+ +  +   + g d+  a    + +ri + + R+ +++ R   + r+     +ds  ++s+d +      +  l +l++eq+  ++l +l 
   KIR65114.1  36 VQEAYIRAWQ--RWSTVAGYDDPEAWVRVVASRIAVSRWRSLRSRAR--AYLRHG---ADDSTPAPSTDTVA----VVAALRQLPEEQRTALALYYLL 122
                  6777777776..44444444444455556677888877777777666..466666...33444455555543....4556777899************ PP

  Sigma70_ECF 151 GlsveEiAeklgvskrtverrlalaRaw 178
                  G+ v+E+A +      tv+ rl   R+ 
   KIR65114.1 123 GMPVTEVARETAAPVGTVKARLSRGRTA 150
                  *******************999888875 PP

>> FANCF  Fanconi anemia group F protein (FANCF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.6e-05     0.047     248     301 ..      27      81 ..      17      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.6e-05
       FANCF 248 tsvaakksklsdayldlLkkWgskleYdlqkgqWvsa.seqsgl.sweeLverFrs 301
                  ++a+ ++++ +ay+ +++ W +   Yd   ++Wv+  +   ++  w +L++r r+
  KIR65114.1  27 GNLAEAQDAVQEAYIRAWQRWSTVAGYDD-PEAWVRVvASRIAVsRWRSLRSRARA 81 
                 57999**********************87.689*888544444458*999998776 PP

>> DUF3106  Protein of unknown function (DUF3106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.22   3.9e+02      19      57 ..       7      46 ..       2      51 .. 0.74
   2 ?   10.9   0.1   0.00028       0.5      52     103 ..      69     117 ..      55     118 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.22
     DUF3106 19 wnelspeqreklleiaerykkltpeeqkrlqerm.eewak 57
                ++e+    r++ll          +e q ++qe + ++w++
  KIR65114.1  7 FDEFYRGSRQRLLGFVYALTGNLAEAQDAVQEAYiRAWQR 46
                7777788888888888888888888888888776577776 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00028
     DUF3106  52 meewakLspeqreqarenyqklkqLppeereelrekweeyqkLppeerkkla 103
                 +++w++L    r+ +r+  +++   p  +     +   + ++Lp+e+r++la
  KIR65114.1  69 VSRWRSLRSRARAYLRHGADDSTPAPSTDT---VAVVAALRQLPEEQRTALA 117
                 589*******************99999999...55566677********986 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00015      0.26       8      32 ..      18      42 ..      13      52 .. 0.72
   2 ?   -1.8   0.0       2.2   3.9e+03      47      59 ..      74      86 ..      72      89 .. 0.75
   3 ?   -1.9   0.1       2.4   4.3e+03      34      47 ..     106     119 ..     100     123 .. 0.48

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
      TPR_12  8 nlaavlrrlgrydeAlellekalei 32
                 l+ v++  g+++eA++  ++a+ +
  KIR65114.1 18 LLGFVYALTGNLAEAQDAVQEAYIR 42
                4777777777777777777777655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.2
      TPR_12 47 tlrnLgrlyralg 59
                +lr  +r+y++ g
  KIR65114.1 74 SLRSRARAYLRHG 86
                7788888888776 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.4
      TPR_12  34 rrllGpdhpltatt 47 
                 r+l+++++ ++a +
  KIR65114.1 106 RQLPEEQRTALALY 119
                 55555555333322 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   9.5e-05      0.17       6      28 ..      18      40 ..      16      43 .. 0.92
   2 ?   -0.2   0.1      0.83   1.5e+03       4      15 ..      75      86 ..      72      88 .. 0.79
   3 ?   -2.3   0.1       3.8   6.8e+03       3       6 ..     118     121 ..     114     124 .. 0.50
   4 ?   -3.0   0.1       6.4   1.1e+04      16      22 ..     159     165 ..     156     166 .] 0.61

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.5e-05
       TPR_2  6 nlGlayyklgdyeeAleafekAl 28
                 lG +y+  g+++eA +a ++A 
  KIR65114.1 18 LLGFVYALTGNLAEAQDAVQEAY 40
                69******************995 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.83
       TPR_2  4 lynlGlayyklg 15
                l  +++ay++ g
  KIR65114.1 75 LRSRARAYLRHG 86
                677999999887 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.8
       TPR_2   3 alyn 6  
                 ++y 
  KIR65114.1 118 LYYL 121
                 2333 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 6.4
       TPR_2  16 dyeeAle 22 
                 d+eeA++
  KIR65114.1 159 DLEEAAD 165
                 5666665 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00022      0.39       5      25 ..      17      37 ..      14      38 .. 0.88
   2 ?    1.1   0.4      0.48   8.6e+02       2      13 ..      73      84 ..      72      86 .. 0.82
   3 ?   -3.6   0.2        10   1.8e+04      19      22 ..     103     106 ..     100     108 .. 0.48
   4 ?   -2.8   0.1       9.2   1.6e+04       6      11 ..     115     120 ..     113     123 .. 0.54
   5 ?   -1.0   0.9       2.4   4.3e+03       8       8 ..     152     152 ..     141     166 .] 0.57

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00022
       TPR_4  5 laLArallalGdldeAralle 25
                 +L+ +++++G+l+eA+++++
  KIR65114.1 17 RLLGFVYALTGNLAEAQDAVQ 37
                689**************9876 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.48
       TPR_4  2 rallaLAralla 13
                r l  +Ara+l+
  KIR65114.1 73 RSLRSRARAYLR 84
                778899****97 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 10
       TPR_4  19 eAra 22 
                 +A++
  KIR65114.1 103 AALR 106
                 3333 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 9.2
       TPR_4   6 aLAral 11 
                 aLA  +
  KIR65114.1 115 ALALYY 120
                 555554 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 2.4
       TPR_4   8 A 8  
                 A
  KIR65114.1 152 A 152
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 1088.79
//
Query:       KIR65115.1  [L=310]
Description: hypothetical protein TK50_06285 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2430.24
//
Query:       KIR65116.1  [L=527]
Description: methylmalonyl-CoA carboxyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.2e-203  676.4   0.1   2.5e-203  676.2   0.1    1.0  1  Carboxyl_trans  Carboxyl transferase domain
  ------ inclusion threshold ------
      0.034   13.6   0.2      0.034   13.6   0.2    1.7  3  MdcE            Malonate decarboxylase gamma subunit (MdcE)


Domain annotation for each model (and alignments):
>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  676.2   0.1  2.8e-207  2.5e-203       1     494 []      37     525 ..      37     525 .. 0.97

  Alignments for each domain:
  == domain 1  score: 676.2 bits;  conditional E-value: 2.8e-207
                     SSCTTCEEEEEEEEHTTSGGGEBEHHHHHHHHHHHHHHH.HHT..EEEEEEEESBETTEEHHHHTTEEEEESSTTSGGGCEEECHHHHHHHHHTE CS
  Carboxyl_trans   1 kehprGkltareridllldpgsFgeledlffhrvtelgr.kkklprdgvvtgsGaviGravevvaqdktvlggslgpakgekllkaqeeaikage 94 
                     k+h+rGk+tareri+llld+gsF+el+++++hr+t++g+ + + ++dgv+tg+G+v+Gr+v+v+aqd+tv+ggslg++ g k++k++++a+k g+
      KIR65116.1  37 KQHARGKKTARERIELLLDEGSFVELDEFARHRSTNFGLeRTRPYGDGVITGYGTVDGRQVCVFAQDFTVFGGSLGEVFGSKIVKVMDLAMKIGC 131
                     69*************************************888999************************************************** PP

                     EEEEEEEE-ESSSGHHSSHHHHHHHHHHHHHHHHHHHCS-EEEEESSEEETHHHHHHHHTSEEEEETTEEEEESSTHHHHHHHHSSCC-SSCHHH CS
  Carboxyl_trans  95 pligindsgGaegriqegveslrgsGkifgenskasgeIpqislvtgrcaGggaYlpalgdrvimveetskifltGpdvikkvlgreevtseelg 189
                     p+igindsgGa  riqegv sl  +G+if++n++asg+Ipqisl++g+caGg++Y+pa++d+++mv++ts++f+tGpdvik+v+g e+v +eelg
      KIR65116.1 132 PVIGINDSGGA--RIQEGVASLGLYGEIFFRNVRASGVIPQISLIMGPCAGGAVYSPAVTDFTVMVDQTSHMFITGPDVIKTVTG-EDVGMEELG 223
                     ***********..************************************************************************.********* PP

                     HSHHHHTTTTSSSEEESSHHHHHHHHHHHHTTS-SSTTSGGSS----EC.....SSGSSSH..HCS-CTTTS---HHHHHHCEECTTC-EEESTT CS
  Carboxyl_trans 190 GatqhmtksGvahltaeddeealelirkllsylPkkasnnresaPivet.....adepdrdlieivPdnakkpyDvreviarlvdegeFlEikeg 279
                     Ga++h+++sG+ah++ +d+++a++ ++ llsylP   snn +++P++++      ++ dr+l++++Pd+a++pyD++ vi+ + d+geFlE+++ 
      KIR65116.1 224 GARTHNARSGNAHYLGADEDDAIDYVKALLSYLP---SNNLDEPPVLDApalldITDADRELDTLIPDSANQPYDMHRVIEHVLDDGEFLEVQPL 315
                     **********************************...77777666655411111445555599******************************** PP

                     SSTTEEEEEEEETTEEEEEEEE--SEEETTEE-HHHHHHHHHHHHHHHHTT--EEEEE-BSEE--SHHHHHTTHHHHHHHHHHHHHT--S-EEEE CS
  Carboxyl_trans 280 yAktvVvGfArlgGipvGvvAnetrveaGqvlfidsavKaarfirlcdaenlPlviladvrGflvGqrqeyggilkhGaklvdalaeakvPkitv 374
                     yA+++VvGf+r++G+pvGvvAn++ ++aG  l+i +++Kaarf+r+cda+n+P+++++dv+Gfl+G+ qe++gi+++Gakl++a+aea+vPk+tv
      KIR65116.1 316 YAQNLVVGFGRVEGRPVGVVANQPMHFAG-TLDIAASEKAARFVRTCDAFNVPVLTFVDVPGFLPGTGQEWDGIIRRGAKLIYAYAEATVPKVTV 409
                     *****************************.***************************************************************** PP

                     E-TEEEHHHHHTTTGGGSTTTTEEETTT-EEESS-HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHH CS
  Carboxyl_trans 375 ilrkayGGayvvmdskingadlvaawptariaVlgpegaveilfrkekaaaemerkdlaaerkkklkeyeeellnpyvaaargfaDavidpsetr 469
                     i+rkayGGay vm+sk++gadl++awpta+iaV+g++gav+il+r+e+aaae    d+aa r++k++eye++l+npy aa+rg++D vi+p etr
      KIR65116.1 410 ITRKAYGGAYDVMGSKHLGADLNFAWPTAQIAVMGAQGAVNILYRQELAAAE----DPAAVRAEKIAEYEDTLANPYIAAERGYVDSVIPPHETR 500
                     ***************************************************9....9************************************** PP

                     HTTSSSEEEHGGGHHHHHHHHHHHH CS
  Carboxyl_trans 470 aklvialelewkkarklparkrrni 494
                     +++v+al+++ +k+++lp++k++ni
      KIR65116.1 501 TQIVRALRVLRTKRETLPPKKHGNI 525
                     ***********************97 PP

>> MdcE  Malonate decarboxylase gamma subunit (MdcE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0      0.87   7.8e+03      93     111 ..     118     136 ..     115     142 .. 0.84
   2 ?   -4.2   0.1       1.1   9.6e+03     107     122 ..     169     184 ..     161     188 .. 0.80
   3 ?   13.6   0.2   3.8e-06     0.034      61     152 ..     362     453 ..     315     477 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.87
                 HHHHHHHHHHHHT--EEEE CS
        MdcE  93 hlakalarArlaGhpvigl 111
                  ++k++++A   G pvig+
  KIR65116.1 118 KIVKVMDLAMKIGCPVIGI 136
                 5788999999999999986 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1.1
                 -EEEEEEEEEEHHHHH CS
        MdcE 107 pvigllvGkavsGafl 122
                 p i+l++G  + Ga  
  KIR65116.1 169 PQISLIMGPCAGGAVY 184
                 7899*****9999975 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 3.8e-06
                 SSS--EEEEEEEE--B--SHHHHHHTHHHHHHHHHHHHHHHHHHT--EEEEEEEEEEHHHHHHTT...TT-SEEEEEET-EEESS-HHHHHHHHT CS
        MdcE  61 raekrpilvlvDvasQrlgrrdEllGihealahlakalarArlaGhpvigllvGkavsGaflahg...lqanrlialpgvqvavmdkasaArvTk 152
                  a + p+l  vDv++   g ++E  Gi    a l+ a+a A +   p ++++  ka  Ga+  +g   l a+   a p +q+avm+ + a  +  
  KIR65116.1 362 DAFNVPVLTFVDVPGFLPGTGQEWDGIIRRGAKLIYAYAEATV---PKVTVITRKAYGGAYDVMGskhLGADLNFAWPTAQIAVMGAQGAVNILY 453
                 455789*********************************9986...99************976653337899999***********998877754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3897.38
//
Query:       KIR65117.1  [L=291]
Description: biotin--acetyl-CoA-carboxylase ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-12   45.1   0.1    1.2e-11   44.3   0.1    1.4  1  BPL_C            Biotin protein ligase C terminal domain
    4.1e-11   42.9   0.0    7.7e-11   42.0   0.0    1.4  1  BPL_LplA_LipB    Biotin/lipoate A/B protein ligase family
    5.7e-10   39.0   0.4    2.8e-09   36.8   0.1    1.9  2  BPL_LplA_LipB_2  Biotin/lipoate A/B protein ligase family
  ------ inclusion threshold ------
       0.11   11.0   0.5       0.52    8.7   0.2    1.9  2  Head-tail_con    Bacteriophage head to tail connecting protei
       0.14   12.0   0.0       0.21   11.4   0.0    1.2  1  Flag1_repress    Repressor of phase-1 flagellin


Domain annotation for each model (and alignments):
>> BPL_C  Biotin protein ligase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.1   3.3e-15   1.2e-11       2      47 ..     244     289 ..     243     290 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 3.3e-15
                 TTSEEEEEE.TSCEEEEEEEEE-TTSEEEEEETTE.EEEESSCCEEE CS
       BPL_C   2 sGqeVtled.edgkveGiavGIdddGaLllktddglqpdinsGdisl 47 
                  G+ V++++ ++++v+G+a+G+d+dG+Ll++t+ g  +++ +Gd+ +
  KIR65117.1 244 VGRSVRVLLpGGQEVTGTATGVDADGRLLVDTPAG-PRTLAAGDVLH 289
                 69*********************************.********987 PP

>> BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   2.2e-14   7.7e-11      21     122 ..      54     161 ..      38     173 .. 0.77

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 2.2e-14
                    --TT-EEEEEEESS-B....-B--B-TT.SEEEEEEEEESS.......-CCGTHHH...HHHHHHHHHHHH......HHTT-TTEEEETTTEEEET CS
  BPL_LplA_LipB  21 lesgglvvvrrqtgGr....nvwhspkg.eltyslllspeq....ktfqnrvlely...vsllvlavlealgyrdskpgiegipvfikwpnDlyvn 104
                     + g++vv++rqt+Gr    +vw+sp + ++++s+ll+p      +  +  +++ y    +l  +a +ea+       +  +  +  kwpnDl+++
     KIR65117.1  54 EPEGLVVVAERQTAGRgrrdRVWQSPARaGIATSVLLRPGEavaeRGWKAVPAAGYgwlPLLAGVALVEAV------ARLAELDAALKWPNDLLIG 143
                    46789********************************9864111145566667777877778888888888......58888899999******** PP

                    TEEEEEEEEEEEETTS-E CS
  BPL_LplA_LipB 105 grKlaGiavtstrgktlh 122
                    + K aGi+ + ++g t +
     KIR65117.1 144 DAKCAGILAEAVPGPTPE 161
                    **********99965544 PP

>> BPL_LplA_LipB_2  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.14     5e+02      94     121 ..      36      63 ..      33      76 .. 0.81
   2 !   36.8   0.1   7.9e-13   2.8e-09      63     177 ..     115     230 ..      75     235 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.14
  BPL_LplA_LipB_2  94 garvGgvrlaaseadeeevPdwlvvgle 121
                      +a +G+ ++ ++ea+++++P+ lvv +e
       KIR65117.1  36 RAETGSTNADVAEAARSGEPEGLVVVAE 63 
                      5788999999999999999999998776 PP

  == domain 2  score: 36.8 bits;  conditional E-value: 7.9e-13
  BPL_LplA_LipB_2  63 vlmvalqdAlgalaPPevavhlewpgtilvngarvGgvrlaaseadeeevPdwlvvglelalekeseepGetpde...taLeeEGcaeveaval 153
                      +++val +A+++la  e+  +l+wp+++l+ +a++ g+ ++a +    e+P  +v+g+ l+++ +++e   +p+    t+L+  G+  +++  l
       KIR65117.1 115 LAGVALVEAVARLA--ELDAALKWPNDLLIGDAKCAGILAEAVPGPTPEQPPAIVLGIGLNVTLRADELPANPTGlpaTSLQLAGAVATDRDPL 206
                      578**********9..69999****************99999997777888899999999999998876666765555**************** PP

  BPL_LplA_LipB_2 154 leslarhllawinrweedGfrpvh 177
                      l +l r +  w +rw+ +G ++v 
       KIR65117.1 207 LRALLRSVADWYDRWRCAGGDAVG 230
                      ******************999885 PP

>> Head-tail_con  Bacteriophage head to tail connecting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.2   0.00014      0.52      57      90 ..      16      48 ..      14      52 .. 0.82
   2 ?   -0.0   0.0     0.064   2.3e+02     248     299 ..     220     271 ..     212     285 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00014
  Head-tail_con 57 aagllsgltpParpWFrlslgkdeeladsaevka 90
                   aa+l ++lt P+ pW rl+l+  e+ +++a+v++
     KIR65117.1 16 AARLRRALTAPHGPWARLELR-AETGSTNADVAE 48
                   899*****************8.666666665654 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.064
  Head-tail_con 248 rWekaggevYGrspvmdalpdiktLqklsrailkaadlavnPpmqvpddgvl 299
                    rW  agg++ G++  + + +++ t+ + +r  l + + ++  ++ v++dg l
     KIR65117.1 220 RWRCAGGDAVGSGLREAYVAACATVGRSVRVLLPGGQEVTGTATGVDADGRL 271
                    9************************999999999999998888888888766 PP

>> Flag1_repress  Repressor of phase-1 flagellin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.8e-05      0.21     117     144 ..     240     267 ..     233     286 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.8e-05
  Flag1_repress 117 kaykqqksikvymkdGrvleGkssGvda 144
                     +   ++s++v +  G++++G ++Gvda
     KIR65117.1 240 ACATVGRSVRVLLPGGQEVTGTATGVDA 267
                    5778899********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2250.50
//
Query:       KIR65118.1  [L=190]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-19   68.4   0.1    6.5e-19   67.9   0.1    1.2  1  bPH_2     Bacterial PH domain


Domain annotation for each model (and alignments):
>> bPH_2  Bacterial PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.1   3.6e-23   6.5e-19       1      79 [.      78     153 ..      78     154 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 3.6e-23
       bPH_2   1 yrattytitdrrvvvrsGillrktldiplerIqavsleqsllqrrlglgtivietaggsraevelplrsvpdaeelael 79 
                 +r+t+y +t++rv++++G+l+r+++dipl+rI +  ++q +++r+lg+gt+ ie+ag+ +   +  l +vp++++++ +
  KIR65118.1  78 WRSTHYLFTNERVLLQQGVLSRDRRDIPLTRINDHAMSQRFVERLLGCGTLTIESAGERG---QSVLTDVPHVDKVQTK 153
                 9**********************************************************8...9999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1356.45
//
Query:       KIR65119.1  [L=251]
Description: polysaccharide synthesis protein GtrA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-22   77.5   9.7    1.2e-21   77.1   9.7    1.2  1  GtrA      GtrA-like protein


Domain annotation for each model (and alignments):
>> GtrA  GtrA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   9.7   6.7e-26   1.2e-21       1     117 []      20     141 ..      20     141 .. 0.96

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 6.7e-26
        GtrA   1 rFlivGvlgtlvdlallllllel.lglsyllAnaiafivailfnFilnrrwtFkdrekakllkqflkFvlvsllglllnllilwllveklgleall... 95 
                 +F++vG+++t++++a++++l  + +  + l A+++a+iva+++++++nr+wt++dr k+ l ++++ F+l++++gll++l++l++  + lg+++ll   
  KIR65119.1  20 KFGVVGGINTAINYAVFNALALTvFRDGQLKATVVATIVATITSYLMNRHWTYRDRPKSALRREYALFFLFNATGLLIELGVLAAAKYGLGMTSLLaln 118
                 7*****************9984459999*****************************************************************999999 PP

        GtrA  96 .aklvgiivalvlnyvlsklfvF 117
                  ak  g+++a++++++ +++fvF
  KIR65119.1 119 vAKTGGVLLATLFRFWSYRTFVF 141
                 99999*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2004.40
//
Query:       KIR65120.1  [L=614]
Description: phosphoenolpyruvate carboxykinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.6e-171  568.5   0.0   5.8e-171  568.2   0.0    1.1  1  PEPCK_GTP    Phosphoenolpyruvate carboxykinase C-terminal P-l
   1.1e-103  345.5   0.0   1.4e-103  345.2   0.0    1.1  1  PEPCK_N      Phosphoenolpyruvate carboxykinase N-terminal dom
  ------ inclusion threshold ------
      0.017   14.8   0.7      0.017   14.8   0.7    2.1  2  Stealth_CR1  Stealth protein CR1, conserved region 1


Domain annotation for each model (and alignments):
>> PEPCK_GTP  Phosphoenolpyruvate carboxykinase C-terminal P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  568.2   0.0  9.6e-175  5.8e-171       1     358 []     246     607 ..     246     607 .. 0.98

  Alignments for each domain:
  == domain 1  score: 568.2 bits;  conditional E-value: 9.6e-175
                 -EEES-EEEEEE-TTS-EEEEEEE-TTTSSHHHHHT---SSTT-EEEEEESS-EEEEE-TTSBEEEE---SEEEEE-TT-STTT-HHHHHHT.TBS-EE CS
   PEPCK_GTP   1 wLaEhmlilgvtspegkkkyvaaafpsacGKtnlamleptlegwkvetvgdDiawlkfgedgrlraiNpeaGfFgvapgtnektnpnalktl.kkntif 98 
                 wLaEhmlil++tspegk+++va+afpsacGKtnlamlept++gwkvet+gdDiaw++fg dgrl+a+Npe+G+Fgvapgt++ktn na++tl + n+if
  KIR65120.1 246 WLAEHMLILKITSPEGKVYHVAGAFPSACGKTNLAMLEPTIPGWKVETIGDDIAWMRFGPDGRLYAVNPEYGLFGVAPGTDWKTNANAMRTLdRGNSIF 344
                 9*******************************************************************************************8888*** PP

                 ES-EEETTS-EE-TT--------EE-TTSSEE-T.T-S.SS-TT-EEEEEGGGSTTB-TTTT-TT-EEEEEEEEEEB-SSSS-SEEE-SSHHHHHHHHH CS
   PEPCK_GTP  99 tNvaltedgdvwWegleeeapaelidwkgkkwtkekek.aahpnsrftvpakqlpiiapewedpeGvpisaiifggrrsetvplvleafdwehGvflga 196
                 tNvalt+dgd+wWeg++ e+pa+l+dwkg++wt+++e   +h+nsrf++p++q+pi+a+++ dp+Gvpi+ai+fggrr++t+plv+ea+dw hGv+lga
  KIR65120.1 345 TNVALTDDGDIWWEGMG-EPPAHLVDWKGNDWTPQSEGlSSHANSRFCTPITQCPILADDYYDPNGVPIDAILFGGRRRDTIPLVTEARDWVHGVYLGA 442
                 ****************7.7889************855569*********************************************************** PP

                 T-EEE--TTSSS-TT-EEE-GGG-GGG-SS-HHHHHHHHHHHTTST...T-B--EEEEEES--B-TTSSBSS--GGGHHHHHHHHHHHHTT..S-EEET CS
   PEPCK_GTP 197 tlesetTaaaegkvgvvrrdPfamlpFlgynlgdYlehwlelgkkl...ekklPkifsvNwfrkdeegkflWPGfgenlrvlkWilkrvegeakavetp 292
                 tl+setTaaa+g+vgvvrrdP+amlpF+gy++gdY++hw+e+gk +   e+klPk+++vNwfrkd+eg+flWPGfgen+rvlkWi++r+eg+a+avetp
  KIR65120.1 443 TLSSETTAAASGAVGVVRRDPMAMLPFIGYHAGDYFRHWIEMGKGTdgdEAKLPKVYYVNWFRKDAEGNFLWPGFGENSRVLKWIIERIEGRADAVETP 541
                 ******************************************998888899************************************************ PP

                 TEEEE-BTTC--TT-..TT--HHHHS---HHHHHHHHHHHHHHHHHTGGGS-HHHHHHHHHHHHHH CS
   PEPCK_GTP 293 iGlvPkkedldlkgldlskedleellsvdkeewkeeveeieelfeklgeklPkelleeleelekrl 358
                 iG+vP++++ld++gld++ ed++ +l+vd +ew+ee+  i+e+fek+g+klP  l++el++l++rl
  KIR65120.1 542 IGMVPAQDALDVDGLDMTPEDVRIALKVDPDEWREELPLITEWFEKFGDKLPGVLWAELDALRARL 607
                 **************************************************************9987 PP

>> PEPCK_N  Phosphoenolpyruvate carboxykinase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.2   0.0  2.4e-107  1.4e-103       2     218 .]      23     242 ..      22     242 .. 0.99

  Alignments for each domain:
  == domain 1  score: 345.2 bits;  conditional E-value: 2.4e-107
                 HHHHHHHHH--SEEEE----HHHHHHHHHHHHHTTSEEE-..TTSBS-EEE---TTSSS--GGGEEEE-SSHHHH-SS--EE-HHHHHHHHHHHSTTTT CS
     PEPCK_N   2 fveevaelcqPdkvvvcdgseeeneellkelvekgelikl..ekypnsylarsdpkDvARvesrTfictekeedagplnnwmdpeemkeelkelfkgcm 98 
                 +v+evael++Pd+vv++dgs+ee+++l++elv++g+li+l  ek+pns++ar+dp+DvARve+rTfic+ +e dagp+nnwm+p+emk+++++l++gcm
  KIR65120.1  23 WVREVAELTTPDRVVWVDGSDEEWRRLTDELVANGTLIRLnpEKKPNSFYARTDPSDVARVEERTFICSVDEADAGPTNNWMAPAEMKRTMTQLYRGCM 121
                 *************************************************************************************************** PP

                 TTSEEEEEEEEES-TTSTT-EEEEEEES-HHHHHHHHHHSEESHHHHTT-SS..TSEEEEEE-S--S.S-SS-BTB---GG-EEEEEGGGTEEEEES-- CS
     PEPCK_N  99 kGrtmyVipfsmGpvgsplskigveiTdsaYVvlsmrimtrvgkkvleklgeeeefvkclHsvgapl.egqkdvkWpcnekkyivhfpeereilsvgsg 196
                 +GrtmyVipf+mGpv+++   +gveiTds+YVv+smrimtr+g+kvl ++g++++fv +lHs+gapl +gq+dv+Wpcne+kyi hfpe+rei+s+gsg
  KIR65120.1 122 RGRTMYVIPFCMGPVEAENPMFGVEITDSPYVVASMRIMTRMGAKVLAAMGDDADFVYALHSIGAPLaPGQQDVAWPCNETKYISHFPETREIWSYGSG 220
                 ******************************************************************99******************************* PP

                 SHHHH-TCCHHHHCHHHHHHHH CS
     PEPCK_N 197 YgGNaLlgKkcfalRiasviar 218
                 YgGN+LlgKkc++lRiasv++r
  KIR65120.1 221 YGGNSLLGKKCYSLRIASVMGR 242
                 ********************96 PP

>> Stealth_CR1  Stealth protein CR1, conserved region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.7   2.9e-06     0.017       9      19 ..      38      48 ..      37      49 .. 0.95
   2 ?   -3.7   0.6       1.8     1e+04       4       7 ..     176     179 ..     174     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.9e-06
  Stealth_CR1  9 WVNGSDPewqa 19
                 WV+GSD ew++
   KIR65120.1 38 WVDGSDEEWRR 48
                 *********97 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.8
  Stealth_CR1   4 DvVY 7  
                  D+VY
   KIR65120.1 176 DFVY 179
                  ***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4187.52
//
Query:       KIR65121.1  [L=256]
Description: UDP pyrophosphate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-70  237.6   0.0    1.4e-70  237.3   0.0    1.0  1  Prenyltransf  Putative undecaprenyl diphosphate synthase


Domain annotation for each model (and alignments):
>> Prenyltransf  Putative undecaprenyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.3   0.0   7.7e-75   1.4e-70       2     224 .]      32     255 ..      31     255 .. 0.91

  Alignments for each domain:
  == domain 1  score: 237.3 bits;  conditional E-value: 7.7e-75
                   E--HHHHHHHTT.S-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEEGGGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEESSGGGS-HH CS
  Prenyltransf   2 mDGNrRwAkkrgleereeGhkaGaealkeilelclelgvkvvtvYafSteNfkRskeevdalmellkeellkeelkellkegvrvrviGdlellped 98 
                   +DGNrRwA++ g+ + ++Gh++Gae++ke+l++c  +gv +vt++ +St+N++R++ee+d l++++++ l +e       + +r+r++G l+ lp++
    KIR65121.1  32 CDGNRRWAREMGFVDPNDGHRMGAERIKELLRWCDAAGVGHVTLWLLSTDNLSRPAEELDPLLQIIED-LSTEL--AEEGNPWRLRMVGALDVLPAH 125
                   6*****************************************************************65.54333..333458*************** PP

                   HHHHHHHHHHHHT.TTTSEEEEEEEEE-HHHHHHHHHHHHHHTT..SSSG.....GGHSHHHHHCTSTT..TSSS-SEEEEESS--S-TTSSTTTTT CS
  Prenyltransf  99 vlealekaeeatkknnkklvlniavnYgsrdeiveavrelvkekseekkk.....eeideetlekhlytakalpdpDlliRtsGeeRlSnFllwqla 190
                    ++al+ aee+t++++ ++++niav Yg+r+ei++avr+l++e++++  +     e++d +++++hlyt + lpdpDl+iRtsGe+RlS+F+lwq+a
    KIR65121.1 126 HAAALKAAEERTRQRTGGAQVNIAVGYGGRREIADAVRSLLHEHAAAGGTleelaETLDVDHISEHLYT-RGLPDPDLIIRTSGEQRLSGFMLWQSA 221
                   *************99999**********************9888643333433334556799******9.457************************ PP

                   T-EEEEESSSGGG--HHHHHHHHHHHHHCHHHTT CS
  Prenyltransf 191 yselyfldvlWPdfskedllealleyqkrerrfg 224
                   +se+yf++  WPdf++ d+l+al++y++r+rrfg
    KIR65121.1 222 HSEFYFCELNWPDFRRVDFLRALRSYANRQRRFG 255
                   ********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1748.50
//
Query:       KIR65122.1  [L=274]
Description: trehalose phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-27   94.7   0.0    6.8e-27   94.1   0.0    1.3  1  Trehalose_PPase  Trehalose-phosphatase
  ------ inclusion threshold ------
       0.16   11.6   0.0       0.74    9.5   0.0    1.8  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
       0.25   11.7   8.8        1.7    9.0   1.3    3.4  3  HAD              haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Trehalose_PPase  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.0   1.1e-30   6.8e-27       1     205 [.      34     226 ..      34     260 .. 0.90

  Alignments for each domain:
  == domain 1  score: 94.1 bits;  conditional E-value: 1.1e-30
                      EEETBTTTB---SSGGG--B-TTHHHHHHHHHTTS-..EEEE-SS-HHH.HHHHH---SSEEEEGGGTEEE-TT--EEE-HHHHTTHHHHHHHH CS
  Trehalose_PPase   1 flDydGTlspivedpdaavpssellslLkkLasdpknvvaivSGrslke.eellvkvpelglaaeHGaeirspsgedwenqaevedlewlkevk 93 
                      f+D+dGTl p  +dp a+ p +++l ++++La  ++  vaivS+r +++  + l+++ +  l +  G+e +  +ge+ ++    ++l+w+ +++
       KIR65122.1  34 FFDFDGTLAPVDDDPTAVQPAPKVLAAIEALAPLVR-RVAIVSARPVEFlRDHLGGLAGVDLYGLYGLEHSHSGGETVTE---PAALPWVPTMQ 123
                      89********************************99.9*************************************77775...99999999999 PP

                      HHHHHH.HTTSTT-EEEEETTEEEEE-TT--TT..THHHHHHHHHHHHHHH.--EEEE-SSEEEEE-S---.HHHHHHHHHHTS--------EE CS
  Trehalose_PPase  94 eileek.tertpGsyiEekkfalsvHyrnaddeelqakelaehlesvltdkpdlevtqgkkvvevrpqgvs.KGkaverlleslgsadseddfv 185
                      e  + + +e  pG+ +E k+ ++++H r a++     +e+ e+  ++  +  +l+v+ g++v+e++p ++  KG ++ +++++ g+a       
       KIR65122.1 124 ELADLArAELPPGALVEFKRLSVALHWRTAPQL----REVVEKWGQAQAERLGLRVQAGRMVLEIKPPVDRdKGMVIGEVVRDAGGA------- 206
                      999876155558******************987....899999999999999*********************************98....... PP

                      EEEE-SSTTHHHHTTS-TT. CS
  Trehalose_PPase 186 lciGDdrtDedmFsvlrktk 205
                       + GDd++D ++F++lr ++
       KIR65122.1 207 WYFGDDVSDIKAFAALRARA 226
                      99**************9986 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00012      0.74       1      50 [.      33      87 ..      33      97 .. 0.83
   2 ?   -0.4   0.0      0.13     8e+02     209     245 ..     209     258 ..     206     263 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00012
                 EEEEIIIII..S-TTS-.--..HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHH CS
  Hydrolase_3  1 ialDlDGTL..lnsdkk.is..ektkeaikklkekgikvviATGRslravlpvle 50
                 +++D DGTL  +++d + ++  +k  +ai+ l      v+i ++R+++++++ l 
   KIR65122.1 33 LFFDFDGTLapVDDDPTaVQpaPKVLAAIEALAPLVRRVAIVSARPVEFLRDHLG 87
                 69*******5556666665555999**********************99988765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.13
                  EESSGGGHHHHHHS...........SEEEEETTS-..HHHHHHSSEEE-- CS
  Hydrolase_3 209 fGDgeNDieMLeaa...........glgvAmgnas..eevkkaAdyvtks 245
                  fGD+  Di+ + a            g++vA++n +  +ev +aAd +++s
   KIR65122.1 209 FGDDVSDIKAFAALraraaadpeflGVCVAVANPEtgHEVAEAADLTIDS 258
                  77777777777776666666666668888888754226788888888876 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.3   0.00029       1.7       2      18 ..      34      50 ..      33      67 .. 0.79
   2 ?    4.3   0.0    0.0078        46      88     122 ..      55      90 ..      48     137 .. 0.75
   3 ?    2.8   0.3     0.023   1.4e+02     174     187 ..     206     219 ..     139     220 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00029
         HAD  2 lfDfDgTLldgdslell 18
                +fDfDgTL + d ++  
  KIR65122.1 34 FFDFDGTLAPVDDDPTA 50
                9********99876654 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0078
         HAD  88 pgalellaahraaGdrvvvvSgglrplvepll.ael 122
                 p++l++++a +    rv++vS+ + ++++ +l  + 
  KIR65122.1  55 PKVLAAIEALAPLVRRVAIVSARPVEFLRDHLgGLA 90 
                 677777775555556**************9993344 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.023
         HAD 174 vvayGDspsDlpll 187
                  +++GD +sD++++
  KIR65122.1 206 AWYFGDDVSDIKAF 219
                 79*********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2123.99
//
Query:       KIR65123.1  [L=117]
Description: hypothetical protein TK50_06345 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.36   11.3   1.7       0.62   10.6   1.7    1.4  1  DUF4231   Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.7   3.5e-05      0.62      26      66 ..      10      60 ..       1      64 [. 0.73

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.5e-05
     DUF4231 26 vlgallpilvs...........sklgagvsvlkiltallsalvailaaleef 66
                v+++ l+ + +           ++l++++++l+++ta+ ++++a++a l e 
  KIR65123.1 10 VAAVALTSA-VtgnvvigvvgdGELPVVANLLALTTAGTAVVLAVVAELHER 60
                222222222.246788888888999*********************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 964.81
//
Query:       KIR65124.1  [L=146]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-08   32.8   0.0    8.7e-08   32.1   0.0    1.4  1  HTH_3         Helix-turn-helix
    2.1e-06   28.0   1.7    2.1e-06   28.0   1.7    1.8  2  HTH_31        Helix-turn-helix domain
    6.7e-06   26.0   0.0      1e-05   25.5   0.0    1.3  1  HTH_19        Helix-turn-helix domain
    0.00013   22.4   0.1    0.00036   20.9   0.2    1.6  2  DUF1323       Putative transcription regulator (DUF1323)
    0.00013   21.6   0.6    0.00029   20.6   0.6    1.6  1  HTH_23        Homeodomain-like domain
    0.00015   22.1   0.0    0.00024   21.5   0.0    1.2  1  HTH_26        Cro/C1-type HTH DNA-binding domain
     0.0011   18.9   1.0     0.0028   17.7   0.5    1.9  2  HTH_29        Winged helix-turn helix
     0.0028   18.1   0.6      0.006   17.1   0.6    1.6  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
  ------ inclusion threshold ------
      0.026   14.6   0.5      0.061   13.5   0.5    1.7  1  HTH_28        Helix-turn-helix domain
       0.04   14.1   0.2       0.15   12.3   0.0    2.0  2  HTH_17        Helix-turn-helix domain
      0.073   12.9   0.0        4.2    7.2   0.0    2.3  2  LacI          Bacterial regulatory proteins, lacI family
       0.12   12.3   0.1       0.21   11.5   0.1    1.4  1  HTH_11        HTH domain
       0.15   11.8   2.1       0.28   11.0   0.1    2.1  2  MerR          MerR family regulatory protein
       0.25   11.2   1.3       0.76    9.7   0.1    2.2  2  Phage_NinH    Phage NinH protein


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   6.8e-11   8.7e-08       4      52 ..      23      73 ..      20      75 .. 0.92

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 6.8e-11
                HHHHTTHHHHHHHHHHTSSHHHHHHHHTT..SSCSBHHHHHHHHHHHTSEH CS
       HTH_3  4 lRkqlglsqeeLAeklGvsrstisriEnG..ernPsletlkklakaLgvsl 52
                +R  + +s +e+++++Gvsr+ti+r+ +G   + P  e++++ ++ Lg+ +
  KIR65124.1 23 ARAMRAWSGTEVSRRTGVSRQTINRWVRGdwASDPEAERVVAFCEGLGLNP 73
                677888999***************************************876 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   1.7   1.6e-09   2.1e-06       6      59 ..      20      74 ..      11      80 .. 0.85
   2 ?   -1.2   0.0       2.1   2.7e+03      42      52 ..      96     106 ..      74     110 .. 0.56

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.6e-09
      HTH_31  6 LralReraGLsqeevAerlgvsestlsrlEqGrrg.rpspavlealaralgldpa 59
                L ++R+ + +s +ev +r+gvs+ t++r+ +G +   p  + + a++++lgl p 
  KIR65124.1 20 LDDARAMRAWSGTEVSRRTGVSRQTINRWVRGDWAsDPEAERVVAFCEGLGLNPT 74
                556788889*************************9788999***********654 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.1
      HTH_31  42 pspavlealar 52 
                 p   ++eal+r
  KIR65124.1  96 PMDPDVEALLR 106
                 33345555554 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   7.8e-09     1e-05       3      59 ..      19      76 ..      18      81 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 7.8e-09
      HTH_19  3 rLkeaReelgltqeelaerlgisrskisaiEng..kkdvpsaelllkiaealgidleyl 59
                 L  aR ++ ++  e+++r+g+sr  i+ +  g   + +p+ae++ +++e lg+++++ 
  KIR65124.1 19 ALDDARAMRAWSGTEVSRRTGVSRQTINRWVRGdwAS-DPEAERVVAFCEGLGLNPTAA 76
                57789*****************************766.*****************9975 PP

>> DUF1323  Putative transcription regulator (DUF1323)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.2   2.8e-07   0.00036       4      29 ..      32      56 ..      30      61 .. 0.83
   2 ?   -2.4   0.0       4.5   5.8e+03      77      98 ..      96     118 ..      79     128 .. 0.54

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.8e-07
     DUF1323  4 eelaellGyarqtinrWvRkegWkte 29
                 e+++ +G++rqtinrWvR  +W+  
  KIR65124.1 32 TEVSRRTGVSRQTINRWVRG-DWASD 56
                589999************96.57665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.5
     DUF1323  77 tvdaeleallieale.eltpseq 98 
                  +d ++eall ++++ +++++e+
  KIR65124.1  96 PMDPDVEALLRRLVDpNVSDAEK 118
                 44455555555554434555554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.6   2.2e-07   0.00029      16      39 ..      25      50 ..      13      53 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.2e-07
      HTH_23 16 e..GlsvreIAreLgvsrrTvyrwlk 39
                    +s +e++r+ gvsr+T+ rw++
  KIR65124.1 25 AmrAWSGTEVSRRTGVSRQTINRWVR 50
                24469*******************97 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.9e-07   0.00024       3      54 ..      21      73 ..      19      76 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.9e-07
      HTH_26  3 relmadrgitkseLargtgisaatlsrlvkgk.pervsldtLdkiCdaLgctp 54
                + + a r  + +e++r+tg+s++t++r+v g  ++ + +++  ++C+ Lg +p
  KIR65124.1 21 DDARAMRAWSGTEVSRRTGVSRQTINRWVRGDwASDPEAERVVAFCEGLGLNP 73
                5566677789*********************96789**********9999887 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.5   2.2e-06    0.0028      10      33 ..      27      49 ..      17      50 .. 0.89
   2 ?   -2.0   0.0         3   3.8e+03      35      62 ..      76     102 ..      75     103 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.2e-06
      HTH_29 10 eGvstvsqiAkllglsrrtvyrwl 33
                +++s   ++ +++g+sr+t++rw+
  KIR65124.1 27 RAWS-GTEVSRRTGVSRQTINRWV 49
                6786.99****************8 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3
      HTH_29  35 rfeegGlaalld.rrrsgrprnrlseeqe 62 
                 +f + G++ +   r ++  p   +++++e
  KIR65124.1  76 AFAALGWERAATpRAATAPPP--MDPDVE 102
                 578888877666576654444..666666 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.6   4.7e-06     0.006      13      47 ..      11      50 ..       1      56 [. 0.77

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.7e-06
  LZ_Tnp_IS481 13 Grvllvrrvvedrrtva.....qvarelGvslrtaykwla 47
                    + +vrr ++d r+++     +v+r  Gvs++t  +w+ 
    KIR65124.1 11 AFAAFVRRALDDARAMRawsgtEVSRRTGVSRQTINRWVR 50
                  4467899999999999744444699*************95 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.5   4.8e-05     0.061      14      34 ..      30      50 ..      15      51 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.8e-05
      HTH_28 14 svreaArelgisrrtvyrWik 34
                s +e++r+ g+sr+t+ rW++
  KIR65124.1 30 SGTEVSRRTGVSRQTINRWVR 50
                5578***************98 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00012      0.15       6      23 ..      33      50 ..      30      53 .. 0.92
   2 ?   -2.3   0.1       4.1   5.2e+03      15      30 ..     122     136 ..     122     144 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
      HTH_17  6 EaAelLgvsrstvyrlir 23
                E+++  gvsr+t+ r++r
  KIR65124.1 33 EVSRRTGVSRQTINRWVR 50
                999**************7 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.1
      HTH_17  15 rstvyrlirrgelpaa 30 
                 r t++ l+ r  l ++
  KIR65124.1 122 RETIRYLAYRPSL-PV 136
                 6788888877666.44 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0033       4.2       4      23 ..      33      52 ..      32      73 .. 0.77
   2 ?    3.5   0.0     0.048        61      24      46 .]     111     133 ..     105     133 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0033
                HHHHHCTS-HHHHHHHCTTS CS
        LacI  4 DVArlAGVSkaTVSrvLnnk 23
                +V r+ GVS +T+ r ++++
  KIR65124.1 33 EVSRRTGVSRQTINRWVRGD 52
                7999*********9999886 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.048
                 SSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  24 erVseetrerVeaameelnYiPn 46 
                 ++Vs++ +  + + ++ l Y+P+
  KIR65124.1 111 PNVSDAEKFHIRETIRYLAYRPS 133
                 68*******************96 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00017      0.21      15      34 ..      28      47 ..      23      50 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
      HTH_11 15 pisgeeLAeeLnvSrrtvrr 34
                 +sg e +++++vSr+t+ r
  KIR65124.1 28 AWSGTEVSRRTGVSRQTINR 47
                589***************88 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00022      0.28       4      19 ..      33      48 ..      32      50 .. 0.89
   2 ?   -0.3   0.3      0.75   9.7e+02      15      34 ..     124     143 ..     122     144 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00022
                HHHHHHTTTHHHHHHH CS
        MerR  4 evAeltGvsprtLRyY 19
                ev+++tGvs +t+ ++
  KIR65124.1 33 EVSRRTGVSRQTINRW 48
                9************888 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.75
                 HHHHHHHTTSSTSEEETTTS CS
        MerR  15 tLRyYEreGLipppeRtegG 34 
                 t+Ry+  +  +p  +R  g+
  KIR65124.1 124 TIRYLAYRPSLPVDVRKRGN 143
                 99998766666666666655 PP

>> Phage_NinH  Phage NinH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.72   9.2e+02      23      42 ..       7      25 ..       2      29 .. 0.73
   2 ?    9.7   0.1    0.0006      0.76      20      38 ..      32      50 ..      27      59 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.72
  Phage_NinH 23 ARrlkcsRatvRkYvrDkea 42
                AR++    a vR+ ++D  a
  KIR65124.1  7 ARKIAF-AAFVRRALDDARA 25
                677754.4789999999877 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0006
  Phage_NinH 20 tEvARrlkcsRatvRkYvr 38
                tEv Rr   sR+t+ ++vr
  KIR65124.1 32 TEVSRRTGVSRQTINRWVR 50
                9***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1107.92
//
Query:       KIR65125.1  [L=145]
Description: hypothetical protein TK50_06360 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1133.50
//
Query:       KIR65126.1  [L=469]
Description: ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-53  181.2   0.0    2.1e-53  180.8   0.0    1.1  1  PhoH             PhoH-like protein
    9.8e-28   97.0   0.0    1.5e-27   96.4   0.0    1.3  1  PIN_4            PIN domain
    1.2e-07   31.6   0.2    2.1e-07   30.8   0.2    1.4  1  AAA_30           AAA domain
  ------ inclusion threshold ------
      0.021   15.1   0.3      0.073   13.3   0.3    1.8  1  AAA_22           AAA domain
      0.068   12.9   0.1       0.15   11.7   0.0    1.5  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.11   12.9   0.5       0.27   11.6   0.5    1.7  1  AAA_16           AAA ATPase domain


Domain annotation for each model (and alignments):
>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.8   0.0     7e-57   2.1e-53       2     203 ..     259     463 ..     258     465 .. 0.94

  Alignments for each domain:
  == domain 1  score: 180.8 bits;  conditional E-value: 7e-57
                 ----SHHHHHHHHHHH..H-SEEEEE--TTSSTTHHHHHHHHHHHHT.TS-SEEEEEE-S--T.T----SS---------TTTHHHHHHHTTTS-TTCH CS
        PhoH   2 ikpktkeQkeylealk..kndivfaiGpaGtGKtylavalavealkk.kkvkriiltrpavea.geelGflpgdleekvdpylrplydaLkdllgaekv 96 
                 ++ +++eQ+ +l+ l   +  iv   G+aGtGK+ la+++++ea+++ ++ k+++++rp   + g+elG+lpg ++ek++p+ +++ d+L  +++++ +
  KIR65126.1 259 VHGRSAEQRVALDLLLdeSIGIVSLGGRAGTGKSALALCAGLEAVMErRRHKKVVVFRPLYAVgGQELGYLPGSETEKMSPWAQAVFDTLGAVVHENVL 357
                 78899**********955556999*******************998868899*********9989********************************** PP

                 HHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--------.------THHHHHHTTT-TTEEEEE--GGG---- CS
        PhoH  97 ekllekgkievaplaymRGrTlndafvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlp.kgkksGlaealevlknvegieivelkkkdvvRh 194
                 e+++ +g +ev+pl+++RGr+l+dafvi+DEAQ++++  + ++l+R+G++s+vv+t+dv+q d+  +g+++G++ ++e+lk++  +++v+l  ++  R+
  KIR65126.1 358 EEVMARGILEVLPLTHIRGRSLHDAFVIVDEAQSLERGVLLTVLSRIGQGSRVVLTHDVAQRDNLrVGRHDGVTAVIETLKGHPLFAHVTL--NRSERS 454
                 ****************************************************************9777*****************999999..778899 PP

                 HHHHHHHHH CS
        PhoH 195 plvkkivka 203
                 p+++ ++++
  KIR65126.1 455 PIAAMVTDL 463
                 999988776 PP

>> PIN_4  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.0   5.1e-31   1.5e-27       1     131 []      45     183 ..      45     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 96.4 bits;  conditional E-value: 5.1e-31
       PIN_4   1 fVlDTnvlLhdpealksfkeehdvviPitVleELdklKkgsserelarlarqanrlldelleke..............sgrlkvqtsaeelpee.e... 81 
                 fVlDT+vlL+dp+a+++f  eh+vv+P++V++EL++++++ +   l+  arq++r+ldel  ++              +        + el+++ +   
  KIR65126.1  45 FVLDTSVLLSDPAAFHRF-AEHEVVLPLVVISELEGKRHHPE---LGWFARQSLRMLDELRVRHgrldrpvpandaggTL-------RVELNHTdDgvl 132
                 8*****************.****************9999996...*************9977766777777666554333.......444444322333 PP

       PIN_4  82 ...seseknDnrIlavalelkeekpdrkvvLvskDinlrikAkalgieaedye 131
                    +++e+nD rIl+val+l+ e   r+v+LvskD+ lr+kA + g++a +y+
  KIR65126.1 133 ppgFRNESNDARILSVALNLAAEG--RDVTLVSKDMPLRVKAASVGLRADEYR 183
                 3344578***************97..9**********************9995 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.2   7.1e-11   2.1e-07       3     134 ..     263     425 ..     261     464 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 7.1e-11
      AAA_30   3 naeQaaavealltsgdrvavltGpAGtGKtta..lkalreaweaa.ggrviglAptgkaAkv.Laeelgieastiakllkrlk................ 81 
                 +aeQ+ a++ ll ++  ++ l G+AGtGK+ +   ++l++++e++  ++v+++ p  ++  + L+   g e++ +  +    +                
  KIR65126.1 263 SAEQRVALDLLLDESIGIVSLGGRAGTGKSALalCAGLEAVMERRrHKKVVVFRPLYAVGGQeLGYLPGSETEKMSPWA---Qavfdtlgavvhenvle 358
                 689***************************8522688899999998899999999877654448855454444444444...33447777777888899 PP

      AAA_30  82 .................grarlepgtllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaG 134
                                  g  r  ++  +ivDEa  +    l ++l+++ + g +v+l  D +Q +    G
  KIR65126.1 359 evmargilevlplthirG--RSLHDAFVIVDEAQSLERGVLLTVLSRIGQ-GSRVVLTHDVAQRDNLRVG 425
                 99*********9996542..334459**********************99.************8876555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   2.4e-05     0.073       6     113 ..     279     402 ..     275     419 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.4e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee........erpevv.....fvtlpsst..sskdllrellralglelkaerlsseell.ealeqalra 88 
                 gi+ + G +GtGK+ l+     +++ e    +             +     + +lp+s+  + +  +++++  lg   ++  + +ee++ + + + l  
  KIR65126.1 279 GIVSLGGRAGTGKSALALCAGLEAVMERRRHKkvvvfrplY----AvggqeLGYLPGSEteKMSPWAQAVFDTLGAVVHE--NVLEEVMaRGILEVLPL 371
                 6777889*********9999999865444433677754440....24555544444444356666678888888877777..44455444555555444 PP

      AAA_22  89 rav......ielliiDEaqhlrs.eealeeLr 113
                 ++        +++i+DEaq l +   +l+ L+
  KIR65126.1 372 THIrgrslhDAFVIVDEAQSL-ErGVLLTVLS 402
                 444445556699*********.6244444444 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1         3   8.9e+03       5      14 ..     285     294 ..     285     306 .. 0.85
   2 ?   11.7   0.0   5.2e-05      0.15      63     100 ..     381     419 ..     371     428 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3
  Viral_helicase1   5 GvpGcGKStl 14 
                      G +G GKS l
       KIR65126.1 285 GRAGTGKSAL 294
                      669****976 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 5.2e-05
  Viral_helicase1  63 gkililDEylllhaGyill.laalskaklvilfGDplQi 100
                        ++i+DE+++l++G++l  l ++ + + v+l+ D +Q 
       KIR65126.1 381 DAFVIVDEAQSLERGVLLTvLSRIGQGSRVVLTHDVAQR 419
                      679****************999***************95 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.5     9e-05      0.27       4      46 ..     261     305 ..     259     420 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9e-05
      AAA_16   4 GReeeleqLlsalervrsgrpelvllsGesGvGKsslv.....rellr 46 
                 GR +e+   + al+ + + + ++v l G +G+GKs+l+     +++++
  KIR65126.1 261 GRSAEQ---RVALDLLLDESIGIVSLGGRAGTGKSALAlcaglEAVME 305
                 677777...5666666677779***************94433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3458.93
//
Query:       KIR65127.1  [L=233]
Description: hypothetical protein TK50_06370 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-05   22.0   0.0    0.00022   20.9   0.0    1.5  1  SLT         Transglycosylase SLT domain
     0.0061   15.0   1.5     0.0069   14.8   1.5    1.0  1  Menin       Menin
  ------ inclusion threshold ------
       0.02   14.7   4.3      0.021   14.6   4.3    1.1  1  TAF4        Transcription initiation factor TFIID component T
       0.18   11.6   9.8       0.25   11.2   9.8    1.1  1  CT47        Cancer/testis gene family 47
        3.2    7.4   6.6        4.4    6.9   6.6    1.1  1  DUF2229     CoA enzyme activase uncharacterised domain (DUF22
          5    7.0  10.2        7.1    6.5  10.2    1.2  1  DUF1068     Protein of unknown function (DUF1068)


Domain annotation for each model (and alignments):
>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   7.3e-08   0.00022      20      82 ..     161     219 ..     153     227 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 7.3e-08
                 HHHHHHTT-TT-B-.TTSEBTTTTBETTTHHHHHHHHT-SHHHHCSHHHHHHHHHHHHHHHHHT CS
         SLT  20 iaqvESgfnpkAvs.ksgavGLmQimpstakrlglrvklsedelldPeknisagakyLkslykq 82 
                 +  +ESg+npkA + +sga G+ Q +p    + +     + d  ++P++ i+ g  y+k +y++
  KIR65127.1 161 LWTKESGWNPKAHNsSSGAHGIPQAVPGSKMASV-----GDDWETNPATQIKWGLGYIKGRYSS 219
                 6679********998999*********9877755.....79999*****************987 PP

>> Menin  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.5   2.3e-06    0.0069     423     493 ..      48     119 ..      40     179 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.3e-06
       Menin 423 sltkfdadvrs..kvviklkedleaeqaaaaeaaaaeaaededaaseealeGnrrrgprreskkeeksksseq 493
                 +l+ fd++  +  + +i++ e   ae +a+++aaaa+ +++e a ++ea   +r+r +    k  ek+ ++++
  KIR65127.1  48 DLAEFDYQRERqaQHRIVSAETRAAEYQAEKRAAAAAKEAAERAREAEAASRKRER-EAAAKKAAEKAAAAKA 119
                 689999996441267899***99999999977665544444444444443332222.2222233344443332 PP

>> TAF4  Transcription initiation factor TFIID component TAF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   4.3     7e-06     0.021     127     200 ..      54     123 ..      32     207 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7e-06
        TAF4 127 keeeekrqakRi..eereglekaakdrskgedeeekklkaketakevqkeedekarhraANatAlaavgeprkKky 200
                 +++e +  + Ri  +e+   e +a++r+  +  +e+ ++a+e+  +  k+e e+a ++aA  +A+a +g    K y
  KIR65127.1  54 YQRERQA-QHRIvsAETRAAEYQAEKRAA-AAAKEAAERAREAEAASRKREREAAAKKAAEKAAAAKAG----KPY 123
                 4444333.347755666666666663333.333334444555555567*********************....333 PP

>> CT47  Cancer/testis gene family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   9.8   8.3e-05      0.25     162     245 ..      33     118 ..      17     126 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.3e-05
        CT47 162 seepalLlvlerlgagaaaaegeglglieeaasveEpaveadlaem.aeEpaeeaaeeeaaeeaaeeaaaeElaa.eaaEEPalee 245
                 + + + L  + +l++ +a  +++ + +++   + +E    + +ae+ a  +a+eaae + ++eaa  + + E+aa +aaE  a+ +
  KIR65127.1  33 ETQQQGLTAQVGLQVDLAEFDYQRERQAQHRIVSAETRAAEYQAEKrAAAAAKEAAERAREAEAASRKREREAAAkKAAEKAAAAK 118
                 55666677777888888999999999999999999999999999975777788999999999999999999998834455544444 PP

>> DUF2229  CoA enzyme activase uncharacterised domain (DUF2229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.6    0.0015       4.4     119     186 ..      53     124 ..      35     127 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0015
     DUF2229 119 dledkkelakqlle......elgiskkeikkAvekAleaqkafkeelrkkgeelleeleeegkkgivllGrpYh 186
                 d+++++++ +++++      e++  +k++ +A+++A e+ ++++++ rk+++e+ ++ ++ +k + + +G+pY 
  KIR65127.1  53 DYQRERQAQHRIVSaetraaEYQ-AEKRAAAAAKEAAERAREAEAASRKREREAAAK-KAAEKAAAAKAGKPYD 124
                 44444456666664445443444.455666666777777777777777777777665.556888999******5 PP

>> DUF1068  Protein of unknown function (DUF1068)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  10.2    0.0024       7.1     100     151 ..      53     104 ..      28     117 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0024
     DUF1068 100 aeekqkradvalleakklasqYqkeAdKCnsgmetcEeaREkaeaalaeekk 151
                 + +++++a+  ++ a   a++Yq e     ++ e +E aRE   a  ++e+ 
  KIR65127.1  53 DYQRERQAQHRIVSAETRAAEYQAEKRAAAAAKEAAERAREAEAASRKRERE 104
                 346788999*******************************965555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1854  (0.103408); expected 358.6 (0.02)
Passed bias filter:                      817  (0.0455686); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 1517.41
//
Query:       KIR65128.1  [L=218]
Description: protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-23   83.1  10.7      3e-23   82.5  10.7    1.3  1  Rhomboid         Rhomboid family
  ------ inclusion threshold ------
        3.3    7.8   7.9        5.4    7.1   0.6    2.6  2  DUF543           Domain of unknown function (DUF543)


Domain annotation for each model (and alignments):
>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5  10.7   3.3e-27     3e-23      10     148 ..      69     202 ..      60     204 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 3.3e-27
                 HHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S...-EESSHHHHHHHHHHHHHHHHCCCCGS----HC...CC CS
    Rhomboid  10 lltsmflHagwlHllfNmlallvfGsplerrlGslrflllyllsglagsllsllfsaesesplvGaSGaifgllgallvlvprnrkllrkliialllll 108
                 +l+s flHa++ Hl  N++ l+++G+ +    G  rf++ +l+ +l+++l+++++ + + s++vGaSG+ifg+lg+ll+++  +r  + ++++    l+
  KIR65128.1  69 VLFSPFLHADFNHLYSNSVPLILLGTFVLAA-GFRRFMWSTLVIVLVSGLGVWFTGSPN-SVVVGASGVIFGYLGVLLTRGVVERSWWNFAVVL---LV 162
                 6899*********************987766.***********************9997.5*************************99988877...99 PP

                 CCCCCCCCHHHCTSSSTTTHHHHHHHHHHHHHHHHHHCCH CS
    Rhomboid 109 lfillnlvlgllpraggvsnlAHlgGllaGlllgllllrr 148
                  +++   +lg+lp ++ +s+++Hl+Gl++G+++++l++rr
  KIR65128.1 163 GLLYGWQLLGILPTDERISWQGHLFGLVGGVVAAILFRRR 202
                 999999999999999*******************999987 PP

>> DUF543  Domain of unknown function (DUF543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.5    0.0065        58      27      56 ..     126     158 ..     120     169 .. 0.77
   2 ?    7.1   0.6    0.0006       5.4      35      50 ..     188     203 ..     184     205 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0065
      DUF543  27 nllvkvglgllvGvvasvllfr....rRaapval 56 
                 n++v  + g+++G  ++vll+r    r ++  a+
  KIR65128.1 126 NSVVVGASGVIFGY-LGVLLTRgvveRSWWNFAV 158
                 67788889999996.59********777776655 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0006
      DUF543  35 gllvGvvasvllfrrR 50 
                 gl+ Gvva++l+ rrR
  KIR65128.1 188 GLVGGVVAAILFRRRR 203
                 6777777777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.86
# Mc/sec: 763.15
//
Query:       KIR65129.1  [L=322]
Description: ferredoxin-NADP reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-29  103.1   0.4    2.1e-29  102.7   0.4    1.1  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    2.6e-17   63.0   0.0    7.3e-14   51.7   0.0    2.3  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.2e-14   54.6   1.1    3.3e-11   43.6   0.1    2.4  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    4.7e-09   35.8   6.8    1.4e-05   24.4   0.9    3.7  4  FAD_binding_2  FAD binding domain
    3.2e-08   32.7   0.1      6e-06   25.2   0.5    3.2  4  HI0933_like    HI0933-like protein
    9.7e-08   31.8   1.0      1e-05   25.1   1.3    2.2  2  FAD_oxidored   FAD dependent oxidoreductase
    3.8e-07   30.2   3.6    1.9e-05   24.8   0.2    2.9  3  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    4.2e-07   29.9  11.3      7e-05   22.6   1.0    3.9  4  DAO            FAD dependent oxidoreductase
    8.1e-06   25.2   0.5    0.00016   21.0   0.1    2.5  3  Thi4           Thi4 family
    0.00012   21.4   1.3     0.0016   17.7   0.1    2.2  2  FAD_binding_3  FAD binding domain
     0.0034   17.4   6.1        4.3    7.3   0.9    3.4  3  NAD_binding_9  FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.011   14.8   4.6       0.41    9.6   0.2    3.1  4  Lycopene_cycl  Lycopene cyclase protein
       0.03   13.4   5.0       0.13   11.3   0.4    2.9  3  GIDA           Glucose inhibited division protein A
      0.056   12.6   0.1       0.69    9.0   0.0    2.4  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
      0.099   13.1   0.5       0.26   11.8   0.1    1.9  2  NAD_binding_7  Putative NAD(P)-binding
       0.14   12.7   0.9         13    6.3   0.1    2.6  3  XdhC_C         XdhC Rossmann domain
        0.3   10.3   2.3       0.32   10.2   0.2    2.0  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.4     2e-32   2.1e-29       2     285 ..       5     287 ..       4     303 .. 0.82

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 2e-32
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE..TTHCHHHCSHHHHCHHHHHHHHHHHHH........HHHHCHHHHCCCCHCCTCEEEEESCEEEEETE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve..legtclnggcllskallgvaedaeias........evvkklnqgielllgeevvkidpgkkkvklek 89 
                  dv+viG+Gp Gl aa +++  g+ v++v+   e       + + k +l va+++ +           +   ++  + l +++e+++   g+  + l  
   KIR65129.1   5 DVAVIGAGPTGLFAAYYAGFRGLSVAVVDalPEAGGQITAMYPEKLILDVAGFPAVKGrdlvanlvAQAAPFQPRYLLGTRAEKLSHTDGQPVLGL-- 100
                  8***************************9884444455668899**********877799999877555556666665566566666555544444.. PP

                  EECTCEEEEEESEEEE---EEE-BC.TCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  90 kkegdeekiaydklvlAtGssprdl.gipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkels 186
                       +e++a++++v+  G  ++++ ++p +   +g++   +   e+  l+   +++++vGgG  + + A al  l+  vtlv++r+r+       + 
   KIR65129.1 101 ---AGGEQLACGAVVVTGGLGSFTPrPLPVADSFTGTG-IVYFVPEPAALAD--RDVLIVGGGDSAFDWALALEPLARSVTLVHRRERFR------AH 186
                  ...5678************9999999999664555555.4444555554555..55*********************************7......66 PP

                  HHHHHHHHHTTEEEEESCEEEEEEETTE....EEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGCTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 187 aaleealekeGvevklgtsvkeidgnge....klevvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDvagg 280
                  aa  ++++++ v+++++++v+++ g++     +++v+    e++++d+vv a G++++   +  + gl l +r+ i+vd+ ++tn p ++a+GD+++ 
   KIR65129.1 187 AATVARVQRSSVRIVVNAEVTRLHGDSAvtgaEITVKGAAPETLPVDTVVAALGFTADLGPI-AEWGLRL-DRRHILVDSAMATNLPRVFAAGDITEY 282
                  77777888889****************99987888***********************8776.*******.999**********************44 PP

                  CCSS- CS
                  xxxxx RF
  Pyr_redox_2 281 kggpe 285
                   g+++
   KIR65129.1 283 PGKVR 287
                  44444 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.2   0.00072      0.76       2      40 ..       8      47 ..       7      54 .. 0.77
   2 !   51.7   0.0   6.9e-17   7.3e-14     151     305 .]     136     277 ..     101     277 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00072
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkg..nignsiyryp 40
                 +iGaGP Gl aa+ +   gl ++ +++    + g+    yp
   KIR65129.1  8 VIGAGPTGLFAAYYAGFRGL-SVAVVDALpeAGGQITAMYP 47
                 8*******************.79999975523344444455 PP

  == domain 2  score: 51.7 bits;  conditional E-value: 6.9e-17
  Pyr_redox_3 151 khyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvk 248
                  +  + v+e++ +a+++v+++Gg++Sa+D Al l     +Vt+v+r++  +++     +++  + ++ ++ +v+ e  +++ ++ v+       e++vk
   KIR65129.1 136 I-VYFVPEPAALADRDVLIVGGGDSAFDWALALEPLARSVTLVHRRERFRAHA----ATVARVQRSSVRIVVNAEVTRLHGDSAVTGA-----EITVK 223
                  3.457889999***********************************9777763....4555555666655555565667777666553.....45666 PP

  Pyr_redox_3 249 tedgkkvevkddvvlatGykpdlsflkkslfeldedgrpvlteeteetnvpglflaG 305
                   +  +++ v d vv+a+G++ dl ++++ ++ l  d+r  l ++ + tn+p +f aG
   KIR65129.1 224 GAAPETLPV-DTVVAALGFTADLGPIAEWGLRL--DRRHILVDSAMATNLPRVFAAG 277
                  666666666.788999**********9666655..889999999***********99 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1    0.0013       1.4       2      35 ..       6      39 ..       5      50 .. 0.86
   2 !   43.6   0.1   3.1e-14   3.3e-11       2      75 ..     151     217 ..     150     224 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                v+v+G+G +gl +A ++   g +V vv++ ++  
  KIR65129.1  6 VAVIGAGPTGLFAAYYAGFRGLSVAVVDALPEAG 39
                89*********9999998899******9998866 PP

  == domain 2  score: 43.6 bits;  conditional E-value: 3.1e-14
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgves 75 
                 v++vGgG+++ ++A al  l+ +Vt+v+r+++++      a +++  ++++  ++++ n++v++++g++  v++
  KIR65129.1 151 VLIVGGGDSAFDWALALEPLARSVTLVHRRERFR------AHAATVARVQRSSVRIVVNAEVTRLHGDSA-VTG 217
                 89********************************......**************************9997.554 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.9   1.3e-08   1.4e-05       1      39 [.       5      43 ..       5      45 .. 0.95
   2 ?    1.3   0.0      0.14   1.5e+02     137     177 ..      59     100 ..      52     137 .. 0.75
   3 !    6.2   0.0    0.0044       4.7       1      39 [.     150     188 ..     150     190 .. 0.96
   4 !    5.2   0.4    0.0086       9.1     146     230 ..     188     278 ..     184     310 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.3e-08
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggata 39
                   Dv ViG+G  GL AA+ a  +Gl+vavv+  +e gg+++
     KIR65129.1  5 DVAVIGAGPTGLFAAYYAGFRGLSVAVVDALPEAGGQIT 43
                   9**********************************9875 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.14
                    ..HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTT.EEEEE CS
  FAD_binding_2 137 lvtghallarlvesarkagvdfqerteadeLivedg.rvtGa 177
                     v g+ l+a lv++a   + +++  t+a++L ++dg  v G 
     KIR65129.1  59 AVKGRDLVANLVAQAAPFQPRYLLGTRAEKLSHTDGqPVLGL 100
                    578999999******888889999999999999988745443 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0044
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGG CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggata 39 
                    Dv+++G+G +    Al++    ++v++v   ++f+ ++a
     KIR65129.1 150 DVLIVGGGDSAFDWALALEPLARSVTLVHRRERFRAHAA 188
                    9*********************************99986 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.0086
                    HHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG...................GSSSBSSGTT-S-HHH CS
  FAD_binding_2 146 rlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgr.........allkellgaaaeaettnapavtGdgl 230
                    + v+++++  v++  ++e+++L + d  vtGa+++   +g   +     +v+a+ Gf +           l+++   +  a++tn+p v+  g+
     KIR65129.1 188 ATVARVQRSSVRIVVNAEVTRL-HGDSAVTGAEIT--VKGAAPETLPVDTVVAALGFTAdlgpiaewgLRLDRRHILVDSAMATNLPRVFAAGD 278
                    5567777777************.8899********..777777777779999999999888888877766677777778888888887777665 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.5   5.7e-09     6e-06       2      39 ..       5      42 ..       4      44 .. 0.92
   2 ?    2.0   0.0     0.062        65     102     165 ..      57     117 ..      55     123 .. 0.85
   3 ?    0.3   0.0       0.2   2.1e+02       2      34 ..     150     182 ..     149     186 .. 0.89
   4 ?   -3.0   0.0       2.2   2.3e+03     117     163 ..     191     240 ..     187     243 .. 0.65

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 5.7e-09
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHH CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKi 39
                 dv+viG+G+ Gl+aA  a+ rg +V+++++ +++g  i
   KIR65129.1  5 DVAVIGAGPTGLFAAYYAGFRGLSVAVVDALPEAGGQI 42
                 89***************************999988665 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.062
                  EETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----S CS
  HI0933_like 102 FpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGl 165
                  Fp+  k +d+v  l++++   + ++ l t+ +++++++++   + + ++e+l++ ++v++ GGl
   KIR65129.1  57 FPAV-KGRDLVANLVAQAAPFQPRYLLGTRAEKLSHTDGQ-PVLGLAGGEQLACGAVVVT-GGL 117
                  6766.8899999999999999999999*******886666.788888************9.664 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.2
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakk 34 
                  dv+++GgG + +  A++++   ++V+l+ + ++
   KIR65129.1 150 DVLIVGGGDSAFDWALALEPLARSVTLVHRRER 182
                  89***************9999999999987765 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 2.2
                  HHHHHHT-EEE-S--EEEE...ECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 117 kelkeagvklrletevksv...ekeedgkfrvktkseeeleadklvlAtG 163
                  ++++++ v++ ++ ev+++   ++ ++ +++vk    e+l  d++v A+G
   KIR65129.1 191 ARVQRSSVRIVVNAEVTRLhgdSAVTGAEITVKGAAPETLPVDTVVAALG 240
                  67788888888888888883332223344555555677788888887777 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   1.3   9.9e-09     1e-05       1      41 [.       5      45 ..       5      71 .. 0.94
   2 ?    4.4   0.0     0.019        20       1      32 [.     150     181 ..     150     183 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 9.9e-09
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsg 41
                  Dv V+G+gp G+ AA+ A  +G +v++v+  +  GG+ t+ 
    KIR65129.1  5 DVAVIGAGPTGLFAAYYAGFRGLSVAVVDALPEAGGQITAM 45
                  9**************************************86 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.019
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveerg 32 
                   Dv++vGGg + +  A+a     ++v Lv++r+
    KIR65129.1 150 DVLIVGGGDSAFDWALALEPLARSVTLVHRRE 181
                   9***************************9986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.2   1.8e-08   1.9e-05       1      36 [.       8      43 ..       8      56 .. 0.94
   2 ?    5.4   0.1     0.021        22       1      42 [.     153     195 ..     153     216 .. 0.81
   3 ?   -1.9   0.0       3.8     4e+03      33      55 ..     294     317 ..     291     321 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.8e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraa 36
                   ++GaG +Gl aAy++  +g++v ++++ +  GG+++
     KIR65129.1  8 VIGAGPTGLFAAYYAGFRGLSVAVVDALPEAGGQIT 43
                   8*********************************97 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.021
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE.TT CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev.pg 42 
                    IvG+G s+   A +L    ++v+l+ +r+r+  +aa++ + + 
     KIR65129.1 153 IVGGGDSAFDWALALEPLARSVTLVHRRERFRAHAATVARvQR 195
                    89****9999999999999******************976433 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.8
                    GGG-EECETT.CEECTS---EEET CS
  NAD_binding_8  33 Graasyevpg.vrvdygahifhgs 55 
                    G aa++ ++  v++d  ah f g 
     KIR65129.1 294 GEAATAVNNAaVAIDPSAHLFPGH 317
                    667777776559999999999884 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   1.0   6.7e-08     7e-05       1      36 [.       5      41 ..       5      46 .. 0.92
   2 ?    4.5   0.0     0.021        23     147     207 ..      64     121 ..      54     149 .. 0.67
   3 ?    2.6   0.1     0.081        85       1      35 [.     150     186 ..     150     192 .. 0.75
   4 !    6.1   0.4    0.0067         7     151     207 ..     188     246 ..     182     292 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 6.7e-08
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSG CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiagsga 36
                dv++iG+G +Gl++Ay++  rg  V+++++ ++ag g+
  KIR65129.1  5 DVAVIGAGPTGLFAAYYAGFRGlsVAVVDALPEAG-GQ 41
                8*****************9889********99998.64 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.021
                 HHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHHHH CS
         DAO 147 kltaalaraaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsdll 207
                  l+a l ++a+    + l+gt++++l+++dg+   v   + ge+ a+ avV++ G++s ++
  KIR65129.1  64 DLVANLVAQAAPFQPRYLLGTRAEKLSHTDGQ--PVLGLAGGEQLACGAVVVTGGLGS-FT 121
                 66777777777777789999******998744..444223266657799******997.33 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.081
                 EEEEECTSHHHHHHHHHH..HHTTEEEEESSSSTTSS CS
         DAO   1 dvviiGGGiiGlstAyeL..arrgVtllekgdiagsg 35 
                 dv+i+GGG      A++L   +r Vtl+ +++++  +
  KIR65129.1 150 DVLIVGGGDSAFDWALALepLARSVTLVHRRERFRAH 186
                 89******99999999993334459999999776643 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0067
                 HHHHHHHHTT-EEEESECEEEEEEEETCEEEEE....EECTEEEEEEEEEEE--GGGHHHH CS
         DAO 151 alaraaealGveilegtevtgleeedgkvwgve....rttpgendaadavVnaaGawsdll 207
                 a  +++++  v+i+ ++evt+l + d  v+g e     ++p++   +d+vV a G  +dl 
  KIR65129.1 188 ATVARVQRSSVRIVVNAEVTRL-HGDSAVTGAEitvkGAAPETL-PVDTVVAALGFTADLG 246
                 5566789999***********9.556667777654433333332.7899******888765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   1.5e-07   0.00016      17      55 ..       3      40 ..       1      51 [. 0.89
   2 ?    1.7   0.0      0.12   1.3e+02      15      33 ..     146     164 ..     139     178 .. 0.82
   3 ?   -2.9   0.0         3   3.1e+03     152     176 ..     225     249 ..     202     260 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.5e-07
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailersvspGG 55
                e Dv+++GaG++GL aayy + + +l va++++    GG
  KIR65129.1  3 EVDVAVIGAGPTGLFAAYYAGFR-GLSVAVVDALPEAGG 40
                78*********************.*******98766666 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.12
                 HTEEEEEEE--SHHHHHHH CS
        Thi4  15 yaesDvvivGaGssGLtaa 33 
                 +a+ Dv+ivG+G s    a
  KIR65129.1 146 LADRDVLIVGGGDSAFDWA 164
                 6889********9987655 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3
                 -B-EEEEEEEEEE--GSSSTTTTHH CS
        Thi4 152 vDPlvirakvvvdatGhdgeivavv 176
                   P ++    vv a G  ++++ ++
  KIR65129.1 225 AAPETLPVDTVVAALGFTADLGPIA 249
                 4577888888888888888887765 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   1.5e-06    0.0016       1      34 [.       3      36 ..       3      49 .. 0.91
   2 ?    2.8   0.1     0.055        58       3      36 ..     150     183 ..     148     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.5e-06
                   EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   e+dV+++GaGp+Gl +a     +G +v +v+   
     KIR65129.1  3 EVDVAVIGAGPTGLFAAYYAGFRGLSVAVVDALP 36
                   68****************************9876 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.055
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrstt 36 
                    dVlIVG+G + +  al L     +v+lv +r++ 
     KIR65129.1 150 DVLIVGGGDSAFDWALALEPLARSVTLVHRRERF 183
                    8*******99999999999997889999888765 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1    0.0094       9.9       1      41 [.       7      42 ..       7      56 .. 0.66
   2 ?    5.1   0.0      0.02        21     102     154 ..      64     116 ..      63     118 .. 0.82
   3 !    7.3   0.9    0.0041       4.3     106     154 ..     188     240 ..     170     242 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0094
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdp.sepgagrv 41
                   a++GaGp+Gl ++     r      l++ ++d   e+g g++
     KIR65129.1  7 AVIGAGPTGLFAAYYAGFR-----GLSVAVVDAlPEAG-GQI 42
                   89********998765544.....58888888733334.444 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.02
  NAD_binding_9 102 dlfeellarlpegvtvevhraevvdleeradgqavlladgaslaadaVvLAlG 154
                    dl+++l+a++       ++ +++++l+ ++++  + la+g++la+ aVv++ G
     KIR65129.1  64 DLVANLVAQAAPFQPRYLLGTRAEKLSHTDGQPVLGLAGGEQLACGAVVVTGG 116
                    5667777777665556677899*****999999999*************9977 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0041
  NAD_binding_9 106 ellarlpegvtvevh.raevvdleera..dgq..avlladgaslaadaVvLAlG 154
                    + +ar++ + +v+++ +aev++l+ +   +g+  +v  a  ++l +d Vv AlG
     KIR65129.1 188 ATVARVQ-RSSVRIVvNAEVTRLHGDSavTGAeiTVKGAAPETLPVDTVVAALG 240
                    3344444.4566654399*****99774444412555567789**********9 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2   0.00039      0.41       1      35 [.       5      37 ..       5      49 .. 0.90
   2 ?    5.3   0.0    0.0083       8.7      88     157 ..      64     133 ..      46     138 .. 0.74
   3 ?   -1.2   0.1      0.75   7.9e+02       1      30 [.     150     177 ..     150     185 .. 0.77
   4 ?   -1.0   0.1      0.68   7.2e+02     106     134 ..     184     213 ..     168     247 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00039
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasps 35
                   Dv+viGaGp gl  A        gl+v +++a p+
     KIR65129.1  5 DVAVIGAGPTGLFAAYYA--GFRGLSVAVVDALPE 37
                   9***********999888..999*******99776 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0083
  Lycopene_cycl  88 rlkeellerlv.engvklleakvesveeeeageslvvleggrkirarlvvdarglaslkkarrlglQtfyG 157
                    +l ++l  + +  + + ll  ++e+  + +  + +  l+gg+++ + +vv+  gl+s ++ +      f G
     KIR65129.1  64 DLVANLVAQAApFQPRYLLGTRAEKLSHTDG-QPVLGLAGGEQLACGAVVVTGGLGSFTPRPLPVADSFTG 133
                    4444444444425556667778888888777.9999*******************9988777666666666 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.75
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvli 30 
                    Dv+++G+G      A  l  +  + +v+l+
     KIR65129.1 150 DVLIVGGGDSAFDWALAL--EPLARSVTLV 177
                    9*******9988888777..5566666665 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.68
  Lycopene_cycl 106 eakvesveeeeageslvvleggr.kirarl 134
                    +a ++ v+ ++ + +++v+++++ ++++  
     KIR65129.1 184 RAHAATVARVQRSSVRIVVNAEVtRLHGDS 213
                    333333333333333444444332333333 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   0.00013      0.13       1      28 [.       5      32 ..       5      70 .. 0.85
   2 ?    0.4   0.1      0.25   2.6e+02       1      29 [.     150     184 ..     150     227 .. 0.78
   3 ?    2.3   0.0     0.068        72     349     386 ..     265     301 ..     255     306 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
                CEEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi 28
                dv ViG+G  G+ AA+ a  +G++v+ +
  KIR65129.1  5 DVAVIGAGPTGLFAAYYAGFRGLSVAVV 32
                79***********************998 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.25
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE......E CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi......t 29 
                 dv ++GgG + +  Ala+  l  +v+L+       
  KIR65129.1 150 DVLIVGGGDSAFDWALALEPLARSVTLVhrrerfR 184
                 799************99999999999995544442 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.068
                 TSBBSSSBTEEE-CGGGTB-SHHHHHHHHHHHHHHHHH CS
        GIDA 349 tLetkkvkgLflAGqinGteGYeEaaaqGllAGinaar 386
                  + t+  +++f+AG+i+   G +  +a+G+  +  a++
  KIR65129.1 265 AMATN-LPRVFAAGDITEYPGKVRLIATGFGEAATAVN 301
                 45554.89*************99999999876665554 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.71   7.5e+02       3      15 ..       4      16 ..       3      38 .. 0.71
   2 ?    9.0   0.0   0.00066      0.69     186     231 ..     143     186 ..     101     195 .. 0.80
   3 ?    0.3   0.0       0.3   3.1e+02     292     341 ..     195     242 ..     185     243 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.71
  K_oxygenase  3 lDligiGiGpsnL 15
                 +D++ iG+Gp  L
   KIR65129.1  4 VDVAVIGAGPTGL 16
                 5888899998877 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00066
  K_oxygenase 186 eellakkriaVvGsGqSaaeifedllrrqkkvelklvtrsealepl 231
                  ++ la +++++vG+G Sa + +  l   +   +++lv r+e++++ 
   KIR65129.1 143 PAALADRDVLIVGGGDSAFDWALALEPLA--RSVTLVHRRERFRAH 186
                  4578899***********99887776555..599******999876 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.3
  K_oxygenase 292 eerlrllpnrevesaeaegkg.eveltlrneesgeeetlevdavvlATGYr 341
                  ++++r++ n ev++++ ++   + e+t++     + etl vd+vv A G++
   KIR65129.1 195 RSSVRIVVNAEVTRLHGDSAVtGAEITVKG---AAPETLPVDTVVAALGFT 242
                  557999999999999988742355666555...67899*********9986 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.3   4.6e+03      10      21 ..       6      17 ..       3      49 .. 0.73
   2 ?   11.8   0.1   0.00024      0.26       5      46 ..     146     196 ..     144     272 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.3
  NAD_binding_7 10 vlvvGgGevAar 21
                   v v+G+G+ ++ 
     KIR65129.1  6 VAVIGAGPTGLF 17
                   789999988765 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00024
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapevkeele..........e 46 
                    l ++ vl+vGgG+ A   +  l +    vt+v  +  ++            +
     KIR65129.1 146 LADRDVLIVGGGDSAFDWALALEPLARSVTLVHRRE-RFRAhaatvarvqrS 196
                    6899*********************9*****99983.333323323222221 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.041        43       1      34 [.       6      39 ..       6     112 .. 0.82
   2 ?    6.3   0.1     0.013        13       1      44 [.     151     195 ..     151     239 .. 0.76
   3 ?   -2.4   0.0       6.3   6.7e+03       7      39 ..     242     274 ..     236     307 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.041
                EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG CS
      XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpreefa 34
                ++++Gag+ +   a +a   g++v vvd+ +e+ 
  KIR65129.1  6 VAVIGAGPTGLFAAYYAGFRGLSVAVVDALPEAG 39
                579*************************988743 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.013
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG.-GGG-TT-SE CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefa.tkerfpeade 44 
                 ++i+G+g+ a   a  ++ l  +vt+v  re+f+ +++ ++++++
  KIR65129.1 151 VLIVGGGDSAFDWALALEPLARSVTLVHRRERFRaHAATVARVQR 195
                 689****************************87633333333333 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 6.3
                 STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG- CS
      XdhC_C   7 ghvaqalarlaaalgfrvtvvdpreefatkerf 39 
                   +  ++a+ + +l+ r ++vd+  +++ ++ f
  KIR65129.1 242 TADLGPIAEWGLRLDRRHILVDSAMATNLPRVF 274
                 555667777777788888888877665544433 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00031      0.32      30      71 ..       5      47 ..       1      75 [. 0.82
   2 ?   -0.9   0.2      0.79   8.3e+02      30      68 ..     150     188 ..     141     237 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00031
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TT CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lg 71
                  v viG+G  Gl A+  a   g +V v+D  p++  q+ + + 
   KIR65129.1  5 DVAVIGAGPTGLFAAYYAGFRGLSVAVVDALPEAGGQITAmYP 47
                 699***************************9999988887444 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.79
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHH CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqle 68 
                   vl++GgG      + +   l  +Vt++  r++ + +  
   KIR65129.1 150 DVLIVGGGDSAFDWALALEPLARSVTLVHRRERFRAHAA 188
                  588888888777777777777777777766655444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.52
# Mc/sec: 1866.41
//
Query:       KIR65130.1  [L=230]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-23   82.5   6.3    3.1e-23   82.5   6.3    2.8  2  TetR_C_33  Tetracyclin repressor-like, C-terminal domain
    7.5e-08   32.0   0.0    1.7e-07   30.9   0.0    1.7  1  TetR_N     Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.028   14.3   0.0      0.045   13.6   0.0    1.3  1  HTH_51     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> TetR_C_33  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.044   2.6e+02      41      93 ..       8      59 ..       2      71 .. 0.69
   2 !   82.5   6.3   5.2e-27   3.1e-23       1     100 [.      91     218 ..      91     222 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.044
                HHHHHHHHHHHGGG---TH--CCHHHHHHHHHHHHHHHHHHHHCTTTTSSS-H CS
   TetR_C_33 41 arvlalllaalaalvaaglppadavaaaralwaalhGlvsLelfghfglpadp 93
                arv a +l+ ++a+++++l  +d   + + + a+  G+vs  l   f+  +d+
  KIR65130.1  8 ARVRAEMLDEIKAVARRHL-ATDGANLSLRAVARDMGMVSSALYRYFPSRDDL 59
                5666667777766766666.455678999999999999999999999554443 PP

  == domain 2  score: 82.5 bits;  conditional E-value: 5.2e-27
                 HHHHHHHHHHHHHH-HHHHHHCCSS--TT-S-HGHHCCCCHHHHHHHHHHHGGG---TH...........................--CCHHHHHHHHH CS
   TetR_C_33   1 lralarayrrfAlahpaeYallfgspvpgyaapdelaaagarvlalllaalaalvaagl...........................ppadavaaaralw 72 
                 + a++ra r++Ala+paeYall+gspvpgyaap+++  ++ r+ a+l++++++ +aag+                            p++++a+++a w
  KIR65130.1  91 WQAACRAARDWALARPAEYALLYGSPVPGYAAPADTLGPAMRPPAVLVGIVRDGLAAGRiaapdpgelpeplradlaeiaaalapgLPEALLARCMAGW 189
                 78****************************************************9*****************************743444********* PP

                 HHHHHHHHHHHCTTT.TSSS-HHHHHHHH CS
   TetR_C_33  73 aalhGlvsLelfghf.glpadpdalferl 100
                 ++l+Gl+s+elfg+  ++ ++++++f ++
  KIR65130.1 190 TQLFGLISFELFGRIdRTLPHRAEYFAHQ 218
                 ***************77788888999876 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   2.9e-11   1.7e-07       3      47 .]      20      63 ..      18      63 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.9e-11
                HHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  3 daArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                ++Ar+ +a  G + +++r++A+  G+  +alYryFps+++Ll al
  KIR65130.1 20 AVARRHLATDGAN-LSLRAVARDMGMVSSALYRYFPSRDDLLTAL 63
                5799999999999.****************************885 PP

>> HTH_51  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.5e-06     0.045      24      54 ..      52      82 ..      35      87 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.5e-06
      HTH_51 24 vlpkqteLvvalvveAFekLgcdlrsakpGq 54
                  p+ + L +al+veA++ Lg  +++a +G 
  KIR65130.1 52 YFPSRDDLLTALIVEAYDALGAAVEAADAGA 82
                579999*********************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1755.96
//
Query:       KIR65131.1  [L=314]
Description: NAD-dependent epimerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-06   26.5   0.2    1.8e-05   24.3   0.2    1.9  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.8e-05   24.2   0.5      3e-05   23.4   0.5    1.3  1  FAD_binding_3    FAD binding domain
    0.00028   20.8   1.0    0.00053   19.9   1.0    1.5  1  NAD_binding_10   NAD(P)H-binding
     0.0009   19.5   0.0     0.0016   18.7   0.0    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0042   16.7   0.9     0.0077   15.9   0.9    1.5  1  DAO              FAD dependent oxidoreductase
     0.0051   16.5   0.2     0.0086   15.7   0.2    1.3  1  ApbA             Ketopantoate reductase PanE/ApbA
     0.0058   16.8   1.1      0.018   15.3   1.1    1.9  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
     0.0067   15.7   0.3     0.0081   15.4   0.3    1.2  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
  ------ inclusion threshold ------
      0.019   15.5   0.3       0.04   14.5   0.3    1.5  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
       0.02   15.4   0.1      0.039   14.5   0.1    1.5  1  XdhC_C           XdhC Rossmann domain
      0.027   14.9   0.0      0.048   14.1   0.0    1.4  1  NAD_binding_7    Putative NAD(P)-binding
      0.035   13.5   0.0      0.068   12.5   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.046   14.3   0.0      0.099   13.2   0.0    1.6  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
      0.067   13.5   0.0       0.15   12.3   0.0    1.6  1  TrkA_N           TrkA-N domain
       0.11   12.4   0.1       0.17   11.7   0.1    1.3  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
       0.28   10.4   0.3       0.38   10.0   0.3    1.1  1  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
          2    7.4   7.8        2.8    6.9   1.9    2.3  2  FAD_binding_2    FAD binding domain


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.2   1.7e-08   1.8e-05       5     228 ..       8     206 ..       4     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.7e-08
                 TTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHHHHHH CS
   Epimerase   5 GatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnlleaar 103
                 G +G +G+a+++ l+++g +v +++r+ ++ ++ +   +e v +d  d+++l++l +  ++ a +++A  +  ++  + p         ++  ll aa 
  KIR65131.1   8 G-AGPVGTATAHLLAAAGERVRVVTRRGTGPEHPA---VERVAADAADPDRLAALAD--GAVALYNCANPAYHRWPTDWPP--------LAAALLTAAG 92 
                 4.5************************88887655...4689*************99..9*******88777777444443........5788****** PP

                 HHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTS.TTSHHHHHHHHHHTTSSSE CS
   Epimerase 104 kagvkrllflsSsevYGkdaeqpkeettltgpl.kpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngege.vsrvipalirkilegkqev 200
                 +ag+  l  ++    YG+++  p +e+t   p+ +  +   +  ++  + v a ++++ ++++ +r +   G +    + +  ++p    ++l+g+   
  KIR65131.1  93 RAGA-VLATVGNLYGYGPVDG-PMTEDT---PTvAGGTKGQVRNRMWAEAVAA-HRAGRVRVTEVRGSDYLGVG--ALSlPMMLLP----RVLDGR-RA 178
                 ****.8888888888888888.999999...8866666666777777777665.67788***************..4554666666....777788.77 PP

                 EEETTST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 201 tllgdgtalRdflyveDvaeaillvleh 228
                 +l  d +a   + yv+Dva+ ++++++ 
  KIR65131.1 179 VLPVDFDAPHTWTYVDDVARTLVRAAAD 206
                 88889******************99876 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.5   2.9e-08     3e-05       5      35 ..       5      35 ..       3      46 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.9e-08
                   EEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3  5 lIVGaGpaGlmlallLseaGvrvvlvekrst 35
                   +IVGaGp+G  +a+lL+ aG rv++v++r t
     KIR65131.1  5 VIVGAGPVGTATAHLLAAAGERVRVVTRRGT 35
                   6***************************987 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   1.0     5e-07   0.00053       3     182 ..       9     205 ..       8     207 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 5e-07
                     TSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC..HHHH.....HHHHHHHHHHCT- CS
  NAD_binding_10   3 tGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggk..deeg.....aknivdaakeagv 90 
                      G vG + ++ l+a+g  +v++++R+    +    ++++e v +d+ d++ la+  +ga a + ++++        +     a+++++aa +ag 
      KIR65131.1   9 AGPVGTATAHLLAAAG-ERVRVVTRRGTGPE----HPAVERVAADAADPDRLAALADGAVALYNCANPAYHrwP--TdwpplAAALLTAAGRAGA 96 
                     699******9999995.89**9999887754....89*****************************98877441..344667***********98 PP

                     -EEEEEEETTTTSGCGCH............HHHHHHHCCHHHHHHHHHHHHHHHH.SSSEEEEEEE-CEE-S..T...--SEEEEETTSS----E CS
  NAD_binding_10  91 kRfvlvsaigvgdevpge............fgewnkellkaylaakraaeellra.sgldwTivrpggLtde..p...ttkyrvvekgepfkggs 167
                       + +v+ +  +  v+g+             g++ ++++++++aa+ra    + + +g d+  v    L     p    ++  v+  + +  ++ 
      KIR65131.1  97 -VLATVGNLYGYGPVDGPmtedtptvaggtKGQVRNRMWAEAVAAHRAGRVRVTEvRGSDYLGVGALSLPMMllPrvlDGRRAVLPVDFDAPHTW 190
                     .5666666544445555411111111111134466677888888888877666554788887776555532111212334444444454555555 PP

                     EEHHHHHHHHHHHCT CS
  NAD_binding_10 168 isradVAdvlvavld 182
                     +  +dVA++lv++++
      KIR65131.1 191 TYVDDVARTLVRAAA 205
                     666777777776665 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.5e-06    0.0016       2      82 ..       5      74 ..       4     148 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.5e-06
                     EEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGH CS
  Sacchrp_dh_NADP  2 liiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppiss 82
                     +i+GaG vG a+a+lla+ ++   ++ v++r  ++         ++ +e +a da++++  Laal  ++ ++ n++ p ++
       KIR65131.1  5 VIVGAGPVGTATAHLLAAAGE---RVRVVTRRGTGP-------EHPAVERVAADAADPDR-LAALADGAVALYNCANPAYH 74
                     79*****************97...8**********3.......346699**********9.***99999999999988765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.9   7.3e-06    0.0077       3      29 ..       5      33 ..       4      64 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.3e-06
                EEECTSHHHHHHHHHHHHTT..EEEEESS CS
         DAO  3 viiGGGiiGlstAyeLarrg..Vtllekg 29
                vi+G+G +G +tA+ La++g  V ++ ++
  KIR65131.1  5 VIVGAGPVGTATAHLLAAAGerVRVVTRR 33
                8******************99*9999988 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   8.1e-06    0.0086       2      30 ..       5      33 ..       4      39 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.1e-06
                EEES-SHHHHHHHHHHHHHTHCEEEE-SC CS
        ApbA  2 ailGaGaiGsllaakLakagadvtlilrs 30
                +i+GaG +G+  a+ La+ag+ v +++r+
  KIR65131.1  5 VIVGAGPVGTATAHLLAAAGERVRVVTRR 33
                69*************************98 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.1   1.7e-05     0.018       1      25 [.       6      30 ..       6      36 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.7e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlll 25
                   IvGaG  G ++A+lLa ag +v ++
     KIR65131.1  6 IVGAGPVGTATAHLLAAAGERVRVV 30
                   9*****************9999886 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   7.6e-06    0.0081       4      52 ..       5      52 ..       3     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.6e-06
                 EEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  4 vviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaed 52
                 v++G+Gp G+a+a+ la+ag +v +v ++gt + + + +  +++ +a++
   KIR65131.1  5 VIVGAGPVGTATAHLLAAAGERVRVVTRRGTGPEH-PAVERVAADAADP 52
                 89999999999999999999999999766666554.5555555555555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.3   3.8e-05      0.04       3      32 ..       5      34 ..       4      37 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.8e-05
                EEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox  3 vvvGgGyiglElAgalaelgkkVtvversd 32
                v+vG+G +g   A  la+ g +V vv r+ 
  KIR65131.1  5 VIVGAGPVGTATAHLLAAAGERVRVVTRRG 34
                8**************************985 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   3.7e-05     0.039       2      45 ..       5      67 ..       4     102 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.7e-05
                EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG...-GGG-TT-SE...................- CS
      XdhC_C  2 vifGaghvaqalarlaaalgfrvtvvdpreefa...tkerfpeade...................t 45
                vi+Gag+v+ a a+l+aa+g rv vv  r +     ++er++   +                   +
  KIR65131.1  5 VIVGAGPVGTATAHLLAAAGERVRVVTRRGTGPehpAVERVA---AdaadpdrlaaladgavalyN 67
                79**************************98533233222222...123445555555545444443 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.5e-05     0.048      11      43 ..       5      37 ..       3     101 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.5e-05
  NAD_binding_7 11 lvvGgGevAarkvrklleagakvtvvapevkee 43
                   ++vG+G+v++  ++ l++ag +v vv+ + +  
     KIR65131.1  5 VIVGAGPVGTATAHLLAAAGERVRVVTRRGTGP 37
                   79************************9886333 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.5e-05     0.068      41      93 ..       6      60 ..       3      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.5e-05
                  EES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH..CHHHHTCEECSHHHHHHH-S CS
  2-Hacid_dh_C 41 iiGlGrIGqavakrlkafgmkviaydrskkkee..eeeelgvelvsleellaesD 93
                  i+G+G +G+a+a++l+a g +v ++ r+ +  e  ++e++ ++ ++ + l a +D
    KIR65131.1  6 IVGAGPVGTATAHLLAAAGERVRVVTRRGTGPEhpAVERVAADAADPDRLAALAD 60
                  9**************************9986664566666667778888877777 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.3e-05     0.099       4      61 ..       6      60 ..       3      88 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.3e-05
                   EETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH CS
  F420_oxidored  4 iiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaee 61
                   i+GaG +g a a+ l+aag   + ++v+++r       + e++ +++   d   a+++
     KIR65131.1  6 IVGAGPVGTATAHLLAAAG---ERVRVVTRRGTGPEHPAVERVAADAADPDRLAALAD 60
                   77*****************...******999877666666766666665555555555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00014      0.15       2      56 ..       5      56 ..       4      63 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
                EEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHH CS
      TrkA_N  2 iiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgdatdeevLe 56
                +i+G+G vG++ a+ L ++g++v v+ ++    e+ +   +e v +da+d++ L+
  KIR65131.1  5 VIVGAGPVGTATAHLLAAAGERVRVVTRRGTGPEHPA---VERVAADAADPDRLA 56
                8*****************6668****99765555443...666777777777665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00016      0.17       4      31 ..       6      33 ..       4      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
                EE--SCCHHHHHHHHHHTT-EEEEE-S- CS
     3HCDH_N  4 viGaGtmGagiaavfasagleVvlvdis 31
                ++GaG +G+  a+++a+ag +V++v ++
  KIR65131.1  6 IVGAGPVGTATAHLLAAAGERVRVVTRR 33
                8***********************9885 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00036      0.38       1      27 [.       5      30 ..       5      37 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00036
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylil 27
                 +I+GaGP G a+a+ l  ag  ++ ++
   KIR65131.1  5 VIVGAGPVGTATAHLLAAAGE-RVRVV 30
                 7****************9998.56666 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.9    0.0026       2.8       3      30 ..       5      32 ..       4      41 .. 0.93
   2 ?    3.8   0.1     0.024        26      75     122 ..     190     233 ..     176     286 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0026
                   EEE--SHHHHHHHHHHHHTTT-EEEEES CS
  FAD_binding_2  3 iViGsGlAGLaAAleaaeaGlkvavvek 30
                   +++G+G  G a A+ +a aG +v vv+ 
     KIR65131.1  5 VIVGAGPVGTATAHLLAAAGERVRVVTR 32
                   8*************************97 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.024
                    T-S-HHHHHHHHHTHHHHHHHHHHTT----BCCTSSB-EEE-TT-SST CS
  FAD_binding_2  75 eladqplveafveaapeavdeLeelgvpfsrtedgpvdvrelGglsat 122
                    + +  ++++++v+aa++++++ ++++vp  +    +v +rel    a 
     KIR65131.1 190 WTYVDDVARTLVRAAADERAWGRAWHVPSPP----AVSARELAVRAAA 233
                    5566789*********************999....6666665544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2184.23
//
Query:       KIR65132.1  [L=343]
Description: fructose 1,6-bisphosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.2e-138  461.2   7.6   1.4e-138  461.0   7.6    1.0  1  FBPase_glpX  Bacterial fructose-1,6-bisphosphatase, glpX-enco
  ------ inclusion threshold ------
      0.079   12.9   0.5       0.46   10.5   0.0    2.1  2  DUF4265      Domain of unknown function (DUF4265)


Domain annotation for each model (and alignments):
>> FBPase_glpX  Bacterial fructose-1,6-bisphosphatase, glpX-encoded
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  461.0   7.6  1.5e-142  1.4e-138       1     308 []      14     321 ..      14     321 .. 1.00

  Alignments for each domain:
  == domain 1  score: 461.0 bits;  conditional E-value: 1.5e-142
  FBPase_glpX   1 rnlalelvrvteaAAlaaarlvGrgdkeaadqaAveamrkalneleikgevviGegekdeapmLyiGekvGsgegpevdiavdpleGttlvAkglpna 98 
                  rnlal+lvrvteaAA+aa r+vGrgdke  d aAv+amrk +n+++++g+vviGegekd+apmL++Ge+vG+g+gpevd+avdp++Gttl++kg+pna
   KIR65132.1  14 RNLALDLVRVTEAAAMAAGRWVGRGDKEGGDGAAVDAMRKLINSIPMRGVVVIGEGEKDNAPMLFNGEEVGDGTGPEVDVAVDPIDGTTLMSKGMPNA 111
                  79************************************************************************************************ PP

  FBPase_glpX  99 isviAvaekgsllk.apdvYmeKlvvgpeakgvidldapveenlkavakalgkevedltvvvLdrpRheelieeireagarvklisdGDvaaaiaaal 195
                  ++v+Avae+g++++ ++ +YmeKl+vg+e+++v+d++a v+enl+++ak++g +v+++tv+vLdr Rh++l+++ir++ga +++isdGD+a+aiaaa 
   KIR65132.1 112 LAVLAVAERGAMFDpSAVFYMEKLAVGQEYADVVDINAGVAENLRRIAKVKGTDVSEVTVCVLDRSRHDDLVTQIRRTGAGIRFISDGDIAGAIAAAR 209
                  **************999********************************************************************************* PP

  FBPase_glpX 196 eesgvdvllGiGgapEGvlaAaalkclgGemqarlvprkeeereraekmgiedldkvltledLvkgddvifaatgvTdgelLkgvrfkgggarteslv 293
                   es+vdvl+GiGg+pEG+ aA+alkc+gG mqa+l+pr+++ere+a ++g+ dld+vl ++dLv+gd+++f+atgvT+g+lL+gv++++gga t+s+v
   KIR65132.1 210 GESDVDVLMGIGGTPEGITAACALKCMGGVMQAKLWPRDAQEREKALAAGH-DLDRVLFTDDLVTGDNCFFVATGVTSGDLLRGVSYRAGGAYTQSIV 306
                  ***************************************************.********************************************** PP

  FBPase_glpX 294 mrsksgtvrfiesih 308
                  mrsksgt+r+i+s+h
   KIR65132.1 307 MRSKSGTIRVIDSYH 321
                  ************998 PP

>> DUF4265  Domain of unknown function (DUF4265)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1     0.088   7.8e+02      20      93 ..     130     206 ..     127     221 .. 0.62
   2 ?   10.5   0.0   5.1e-05      0.46      16      60 ..     275     320 ..     267     332 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.088
     DUF4265  20 ffakgvAlg....Dvvev.dedeerlafervvkesGnstirvlvdekaelgesevreeLealgceveglsakllavdvp 93 
                 f+ +++A+g    Dvv +   + e+l     vk    s + v v + ++   ++++ ++++ g+ ++ +s++ +a  ++
  KIR65132.1 130 FYMEKLAVGqeyaDVVDInAGVAENLRRIAKVKGTDVSEVTVCVLDRSRH--DDLVTQIRRTGAGIRFISDGDIAGAIA 206
                 66666666655557777743333333333334455555566666665554..899999999999888888866665555 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 5.1e-05
     DUF4265  16 dniPffakgvAlgDvvev.dedeerlafervvkesGnstirvlvde 60 
                 dn+ f+a+gv++gD+ +  +++ +   ++ +v +s   tirv+   
  KIR65132.1 275 DNCFFVATGVTSGDLLRGvSYRAGGAYTQSIVMRSKSGTIRVIDSY 320
                 7899*************99888888889**************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2631.55
//
Query:       KIR65133.1  [L=273]
Description: hypothetical protein TK50_06410 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.022   15.1   2.0      0.072   13.4   0.2    2.3  2  Invasin_D3  Invasin, domain 3


Domain annotation for each model (and alignments):
>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.039     7e+02      64      91 ..      49      77 ..      20      85 .. 0.59
   2 ?   13.4   0.2     4e-06     0.072      49      95 ..     163     213 ..     133     214 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.039
  Invasin_D3 64 atLta.ttagtatitptvnGvaiaatatv 91
                a L + ++  + ++t+ ++G +++ + tv
  KIR65133.1 49 ALLAStKELSKGNFTFAITGGEFNGSGTV 77
                44555333555555555555444444444 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4e-06
  Invasin_D3  49 g...tlsavtdngdGtytatLtatt.agtatitptv.nGvaiaatatvtlta 95 
                     ++++v++ g+Gty+ tL at+ +++  + + + +G +++++ +v +ta
  KIR65133.1 163 AltkAITDVKKTGEGTYEGTLDATKvTDSDVLDADIvKG-MADKASAVPFTA 213
                 13457889***************7648888889988577.667777788887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1963.12
//
Query:       KIR65134.1  [L=285]
Description: hypothetical protein TK50_06415 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2108.20
//
Query:       KIR65135.1  [L=73]
Description: exodeoxyribonuclease VII small subunit [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-18   65.6   0.1    3.4e-18   65.4   0.1    1.1  1  Exonuc_VII_S  Exonuclease VII small subunit
  ------ inclusion threshold ------
      0.065   13.0   0.0      0.071   12.8   0.0    1.1  1  YihI          Der GTPase activator (YihI)
       0.14   11.2   0.1       0.13   11.3   0.1    1.0  1  Cas_Csy1      CRISPR-associated protein (Cas_Csy1)


Domain annotation for each model (and alignments):
>> Exonuc_VII_S  Exonuclease VII small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.1   5.8e-22   3.4e-18       1      51 [.      15      65 ..      15      66 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 5.8e-22
  Exonuc_VII_S  1 FEealaeLeeIvekLEsgelsLeeslklyeeGvkLlkeCekkLdeaeqkve 51
                  +E+a aeL ++ve+LE g +sLeesl+l+e+G+kL++ C+ +Ld a+++++
    KIR65135.1 15 YEQARAELATVVERLETGGTSLEESLALWERGEKLAEVCQHWLDGARARID 65
                  9***********************************************996 PP

>> YihI  Der GTPase activator (YihI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.2e-05     0.071      83     132 ..      16      66 ..       1      69 [. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.2e-05
        YihI  83 kekklspeqeLakLEnd.erLnaLLdrLeegekLskedqkyvdekLdride 132
                 ++++ +  + +++LE   + L++ L   e+gekL +  q+++d   +rid+
  KIR65135.1  16 EQARAELATVVERLETGgTSLEESLALWERGEKLAEVCQHWLDGARARIDA 66 
                 34455555667888875378*****************************96 PP

>> Cas_Csy1  CRISPR-associated protein (Cas_Csy1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   2.2e-05      0.13     285     336 ..      22      70 ..       4      73 .] 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.2e-05
    Cas_Csy1 285 ldelidellqlaaelrklaeaGWskdeeckLkraqklWLdpeRaeedaefae 336
                 l++++++l     +l++   a W++ e  kL++  + WLd  Ra+ da  ++
  KIR65135.1  22 LATVVERLETGGTSLEES-LALWERGE--KLAEVCQHWLDGARARIDAARRQ 70 
                 556777777777777755.899*****..****************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 605.68
//
Query:       KIR65136.1  [L=390]
Description: exodeoxyribonuclease VII large subunit [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-78  263.3   0.5    4.1e-66  223.6   0.5    2.1  2  Exonuc_VII_L     Exonuclease VII, large subunit
    4.1e-13   49.4   0.0    1.2e-12   47.9   0.0    1.8  2  tRNA_anti_2      OB-fold nucleic acid binding domain
    3.1e-06   27.1   0.0    8.6e-06   25.7   0.0    1.8  2  tRNA_anti-codon  OB-fold nucleic acid binding domain
     0.0031   17.6   0.0       0.02   15.0   0.0    2.2  2  Peptidase_S66    LD-carboxypeptidase N-terminal domain
  ------ inclusion threshold ------
        0.6    9.9   9.3        0.2   11.5   4.6    2.2  2  Apolipoprotein   Apolipoprotein A1/A4/E domain


Domain annotation for each model (and alignments):
>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.6   0.5   1.1e-69   4.1e-66       1     216 [.     117     334 ..     117     336 .. 0.98
   2 !   42.9   0.0   1.2e-14   4.3e-11     241     303 ..     324     386 ..     314     387 .. 0.90

  Alignments for each domain:
  == domain 1  score: 223.6 bits;  conditional E-value: 1.1e-69
  Exonuc_VII_L   1 lfdeerkkplpklpkrigvvtsptgaairDilrtlkrrgplveillfpalvQGeeaaaeiikalekanalkeaDvliiaRGGGSleDLwaFndeela 97 
                   lfd++rk++lp+lp rig++t + +aa rD+l++++rr+p+ve+  ++++vQG +a+ +i++al++++a   +Dv++iaRGGG +eDL +F de+l+
    KIR65136.1 117 LFDRARKRRLPFLPGRIGLITGRASAAERDVLTNARRRWPAVEFRTVNVAVQGPGAVPQIVDALKALDADPTVDVIVIARGGGGIEDLLPFSDEALC 213
                   7************************************************************************************************ PP

  Exonuc_VII_L  98 raiaaskiPvisavGHEtDttiaDfvAdlrapTPtaaAelvvpdkaeleeqleelerrlekaikrlleekkqrleklasrl..kspeellerkrqrl 192
                   ra++a+++Pv+sa+GHEtD  ++D+vAd+ra+TPt aA+ vvpd ae ++ ++++++r+e+a+++l++++++rl+ l+sr   ++p+ ++e+++  +
    KIR65136.1 214 RAVFACRTPVVSAIGHETDAPLVDYVADVRASTPTDAAKRVVPDLAEELRLIRQARQRVERAVRNLVDREAHRLDGLRSRPvlARPQVMVEQRAADV 310
                   *****************************************************************************9887657************* PP

  Exonuc_VII_L 193 deleerleralkkqlkkkrerlee 216
                   + l++r  r+l+++l +++ +l++
    KIR65136.1 311 TALRQRAGRTLHHRLGAAQDELRH 334
                   **************9999998876 PP

  == domain 2  score: 42.9 bits;  conditional E-value: 1.2e-14
  Exonuc_VII_L 241 lleekkerleeleeklealsplkvLkrGyaivrkedgkvvtsakdlkkgdeleirladgevka 303
                   +l +++++l++  ++l+alsp ++L+rGyaiv+++dg+vv+ a ++ +gd+l++rla+ge++a
    KIR65136.1 324 RLGAAQDELRHTLARLRALSPAATLERGYAIVQRADGHVVRAAGEVGRGDALRVRLAEGELAA 386
                   5788999***************************99************************986 PP

>> tRNA_anti_2  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   3.2e-16   1.2e-12      10      94 ..       8      93 ..       1      94 [. 0.77
   2 ?   -2.4   0.0       1.5   5.5e+03      48      76 ..     330     358 ..     300     369 .. 0.49

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 3.2e-16
  tRNA_anti_2 10 ikelleaelkkavwvrGeisnlkrka.sghvYftLkDekakisavifr..sraaklkftledGmkVlvkgrlsvYeprGsyqlivedi 94
                 + + + a+l + vwv G++++++r++   +v++tL+D +a +s ++       ++   +l++G++V++++++++Y++rG+++l++++i
   KIR65136.1  8 VGAWI-ARL-GWVWVDGQVAQISRRPgASTVFLTLRDPSADLSLTVTTnrDVLDAGAPELREGARVVLHAKPEFYAARGTLSLRADEI 93
                 54444.466.77**********9745499********7777777766610333443356***************************99 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.5
  tRNA_anti_2  48 akisavifrsraaklkftledGmkVlvkg 76 
                   +++ ++ r ra +  +tle G  ++ ++
   KIR65136.1 330 DELRHTLARLRALSPAATLERGYAIVQRA 358
                  44444444444434444455554444443 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.4e-09   8.6e-06       1      74 [.      18      94 ..      18      96 .. 0.90
   2 ?   -2.9   0.0       1.9   6.9e+03      49      61 ..     360     372 ..     358     379 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 2.4e-09
                     EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET..HHHHHHHTTS-TTSEEEEEEEEEEC..TTSSEEEEEEEEE CS
  tRNA_anti-codon  1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr..eeatklaenlkeGdvvrvtGrvkrr..pggelelkveeie 74
                     V+v G v +is+r g++ +f++lrD ++ + ++++   +  ++ a +l+eG  v    +++++  +g  l+l ++ei+
       KIR65136.1 18 VWVDGQVAQISRRPGASTVFLTLRDPSADLSLTVTTnrDVLDAGAPELREGARVVLHAKPEFYaaRG-TLSLRADEIR 94
                     89*************************86666666666*************************8555.5******996 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.9
                      TSEEEEEEEEEEC CS
  tRNA_anti-codon  49 GdvvrvtGrvkrr 61 
                      G vvr+ G+v+r 
       KIR65136.1 360 GHVVRAAGEVGRG 372
                      6788888888764 PP

>> Peptidase_S66  LD-carboxypeptidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.61   2.2e+03      18      59 ..      57      95 ..      47     114 .. 0.69
   2 !   15.0   0.0   5.5e-06      0.02      54      90 ..     177     213 ..     158     221 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.61
                   HHHHHHHHHHHCTEEEEEGCTC--TTTTCSS-HHHHHHHHHH CS
  Peptidase_S66 18 eleraievleelglevvlgksaaksagylagtdeeRaadLne 59
                    l+++   l+e g +vvl+ +   +     gt + Ra+++ +
     KIR65136.1 57 VLDAGAPELRE-GARVVLHAKP--EFYAARGTLSLRADEIRQ 95
                   67777778877.8888854433..122345688888887765 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 5.5e-06
                    HHHHHHHHC-TTECEEEES--SS-CHHCHHHH-HCCH CS
  Peptidase_S66  54 aadLnealadpeikaiicarGGygaarllpyldfdai 90 
                    +++L+++ adp++++i+ arGG g   llp+ d ++ 
     KIR65136.1 177 VDALKALDADPTVDVIVIARGGGGIEDLLPFSDEALC 213
                    578999999*********************9997765 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2      0.16   5.8e+02      79     105 ..      90     118 ..      45     125 .. 0.59
   2 ?   11.5   4.6   5.6e-05       0.2     113     188 ..     266     339 ..     230     343 .. 0.59

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.16
                     HHHHHH....HHHHCHHCCHHCHCCHCHHHH CS
  Apolipoprotein  79 teelre....rlaadaeelqeqlavyaeelr 105
                     ++e+r+     l+a++e+l++ la+  e+l 
      KIR65136.1  90 ADEIRQvglgELLARLEKLKKLLAA--EGLF 118
                     3333333333445555555555554..4444 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 5.6e-05
                     HHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS--XXXXXXXXXXXXX CS
  Apolipoprotein 113 ealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelrekleeqaeelrerleanleelkaqleal 188
                      + ++r++  v +l+++ a+rl+ l+++  p +++ + ++++r+ ++ +   ++ + l++rl a+++el+  l++l
      KIR65136.1 266 RQARQRVERAVRNLVDREAHRLDGLRSR--PVLARPQVMVEQRAADVTALRQRAGRTLHHRLGAAQDELRHTLARL 339
                     2223333333333333333333333333..3355666788888888888888888888888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2903.34
//
Query:       KIR65137.1  [L=330]
Description: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-89  298.8   0.0    3.4e-89  298.6   0.0    1.0  1  LYTB           LytB protein
      0.008   15.4   0.0      0.015   14.4   0.0    1.5  2  DUF815         Protein of unknown function (DUF815)
  ------ inclusion threshold ------
      0.084   13.1   0.2       0.66   10.3   0.1    2.2  2  GAD            GAD domain
       0.34   11.4   2.6        7.7    7.0   0.2    3.3  3  CoA_binding_2  CoA binding domain


Domain annotation for each model (and alignments):
>> LYTB  LytB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.6   0.0   7.5e-93   3.4e-89       1     263 [.      14     291 ..      14     292 .. 0.94

  Alignments for each domain:
  == domain 1  score: 298.6 bits;  conditional E-value: 7.5e-93
                 EEE-TT-SS-HHHHHHHHHHHHHHCCC-S.EEECS-SSS-HHHHHHHHHCTEEEESSSST.....EEEE-TT---HHHHHHHHHTTEEEEE---HHHHH CS
        LYTB   1 illaksaGfCfGVerAieiaeealeekke.vyvlgeivHNeqvverLeekgvkfieelee.....vviirAhGvskeveeelkekglevvDatCplVkk 93 
                 +llak++G+C+GV+rA++++eeal+ +++ +yv+++ivHN++vv++Le+kg++f+ee+ee     +vi++AhGv++ev+e++k+++l+ +DatCplV+k
  KIR65137.1  14 VLLAKPRGYCAGVDRAVQTVEEALKLYGApIYVRKQIVHNKHVVQTLEAKGAIFVEENEEvpegaTVIFSAHGVAPEVYEQAKARSLKAIDATCPLVTK 112
                 689****************************************************88665333557********************************* PP

                 HHHHHHHHHHCT-EEEEES-TT-HHHHHHHCCT--TEEEESSCHHHHHG......CEEEEE-TTS-HHHHHHHHHHHHHHSTCEEE..C-S--CHHHHH CS
        LYTB  94 vqkevkklakegyeiviiGkkkHpEvegilgqaeekvvvveeseevekl......kvalvsQTTlsveefeeivealkkklkelev..kdtiCkatqeR 184
                 v++e+k++a+e+y+i++iG+++H+Ev+g++g+a+ ++ +v+  ++++k+      kv+++sQTTlsv+e+ e+v+ lk++l+ l+   +d+iC+at++R
  KIR65137.1 113 VHQEAKRFAAEDYDILLIGHEGHEEVIGTAGEAPAHIQLVDGPDDADKVtvrdpsKVVWLSQTTLSVDETLETVARLKSRLPLLQSppSDDICYATSNR 211
                 ****************************************766666666778999***************************888888*********** PP

                 HHHHHHHHGHSSEEEEES-TT-HHHHHHHHHHHHC.SCTEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHH CS
        LYTB 185 qeavkelakevdlvivvGgknSsNtkkLveiakek.nkktyliesaeeldeewlegvkkvgitaGaStpeelieeviekl 263
                 q+ vke+a ++d+v+vvG++nSsN+ +Lve+a ++  +  +l++ a+e+d++wleg+++vg+t+GaS p+el++ev+++l
  KIR65137.1 212 QHVVKEIAPDCDVVLVVGSRNSSNSVRLVEVALDAgARAGHLVDFAHEIDDAWLEGARTVGLTSGASVPDELVQEVLAHL 291
                 ***********************************5556799**********************************9987 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.97   4.3e+03      39      63 ..     112     134 ..      91     135 .. 0.51
   2 !   14.4   0.0   3.4e-06     0.015     116     163 ..     177     223 ..     151     295 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.97
      DUF815  39 alventeqfleglpannvLLwGarG 63 
                 ++ + +++f++     ++LL+G+ G
  KIR65137.1 112 KVHQEAKRFAAED--YDILLIGHEG 134
                 3344444444332..3677777766 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 3.4e-06
      DUF815 116 LsFeeeeeeyksLksvLeGsleakpenvliyaTsNrRhLlpeklsdne 163
                 Ls +e+ e+   Lks L   l++ p++ + yaTsNr h+++e   d +
  KIR65137.1 177 LSVDETLETVARLKSRLP-LLQSPPSDDICYATSNRQHVVKEIAPDCD 223
                 788888888899999996.799999****************9887765 PP

>> GAD  GAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00015      0.66      13      75 ..      36      97 ..      31     103 .. 0.85
   2 ?    0.1   0.0      0.21   9.5e+02      70      90 ..     117     137 ..     110     141 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
                EEEETTG-TTTSHHHHHHHHHHHHHTTHSHCEEEEESSGGEETTTCCCS-HHHHHHHHHHCT- CS
         GAD 13 alrvpggaaklsrkeideleefakelgakglawikvegegltgpiakflteeevkklleavga 75
                al++ g a  ++rk+i   + +++ l+akg +++  ++e  +g  + f    +  +++e+++a
  KIR65137.1 36 ALKLYG-APIYVRKQIVHNKHVVQTLEAKGAIFVEENEEVPEGATVIFSAHGVAPEVYEQAKA 97
                777888.7899**********************999998888888888777777777777776 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.21
                 HHHCT--TTEEEEEEEEEHHH CS
         GAD  70 leavgaeegDillfvAdkkkt 90 
                 ++++ ae+ Dill++ + +++
  KIR65137.1 117 AKRFAAEDYDILLIGHEGHEE 137
                 68899999*****99766555 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.2    0.0017       7.7      81     113 ..      78     110 ..      27     133 .. 0.68
   2 ?   -1.3   0.0      0.69   3.1e+03      25      61 ..     122     163 ..     112     190 .. 0.54
   3 ?    2.2   0.1     0.053   2.4e+02      43      82 ..     212     250 ..     204     276 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0017
                    SEEEE-TT---HHHHHHHHHTT-EEE.ES-HHH CS
  CoA_binding_2  81 kavwlqpgsedeeaaelaeeagirvvgdrCilv 113
                    ++v++ ++ + +e++e+a+++ ++ +   C+lv
     KIR65137.1  78 ATVIFSAHGVAPEVYEQAKARSLKAIDATCPLV 110
                    456666667777777777777777777777766 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.69
                    HHT--EEEE.SSS-SEETTEE....S----T....T--EEEE CS
  CoA_binding_2  25 ehglpvvpV.npkeeeilgek....vyaslaedpepvdlvdv 61 
                    +++++++ + +  +ee+ g      ++ +l + p + d v+v
     KIR65137.1 122 AEDYDILLIgHEGHEEVIGTAgeapAHIQLVDGPDDADKVTV 163
                    455666666333335555533222233344432344444444 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.053
                    EES----T....T--EEEE-S-HHHHGGGHHHHHHH--SE CS
  CoA_binding_2  43 ekvyaslaedpepvdlvdvftppeatpeivkealalgaka 82 
                    + v++++a ++ +v lv+  ++++  + +v+ al++ga+a
     KIR65137.1 212 QHVVKEIA-PDCDVVLVVGSRNSSNSVRLVEVALDAGARA 250
                    45777778.44666778888999999*****999998554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2384.31
//
Query:       KIR65138.1  [L=145]
Description: hypothetical protein TK50_06435 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.5    8.8   6.5        3.6    7.6   6.5    1.7  1  LPAM_2    Prokaryotic lipoprotein-attachment site


Domain annotation for each model (and alignments):
>> LPAM_2  Prokaryotic lipoprotein-attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.5    0.0002       3.6       2      15 ..       8      21 ..       7      21 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0002
      LPAM_2  2 llllallllLaGCG 15
                +++l+++++L++CG
  KIR65138.1  8 VAALVTCAALSACG 21
                89***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1072.07
//
Query:       KIR65139.1  [L=1100]
Description: serine protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-56  191.2   5.8    2.3e-56  191.2   5.8    1.8  2  Peptidase_S8  Subtilase family
    3.9e-05   24.7   7.9    6.5e-05   24.0   0.2    4.2  4  PPC           Bacterial pre-peptidase C-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.2   5.8   2.6e-60   2.3e-56       1     298 []     190     622 ..     190     622 .. 0.82
   2 ?   -1.8   0.1      0.17   1.5e+03     181     223 ..     759     807 ..     717     843 .. 0.74

  Alignments for each domain:
  == domain 1  score: 191.2 bits;  conditional E-value: 2.6e-60
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.......................................................... CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................................... RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegag......................................................... 40 
                   g+gv+++++D+Gvd +hp l+ tt+gerk+vd      ++                                                         
    KIR65139.1 190 GRGVTIGIMDSGVDLDHPALQTTTTGERKIVDWVTA--TDpledatwramitevsgpsftaggatwtapagsyrfntfresitagsdpagdvnrdgd 284
                   89****************************876654..44668899999999999999999999999999999988888887766666666655555 PP

                   ............GGEETT-SS-TT-SC-S...................................................................S CS
                   ............xxxxxxxxxxxxxxxxx...................................................................x RF
  Peptidase_S8  41 ............fngadsettstnwardd...................................................................n 58 
                               +                                                                                   n
    KIR65139.1 285 ttdtfgilydatT---------------HdirvdangnrdftddpvmrpykekfqvgrfgtdnpatavreqipfvveyredvdttpvggpglvdyvN 366
                   5555555555441...............055555555555555666677777777777777777777777777777777777777777777776543 PP

                   S........HHHHHHHHHH-B...SSSSSB-SSTTSEEEEEE-SSTTSB-HH..HHHHHHHHHHHH.CT-SEEEE-EESCETTCHHCHHHHHHHHHH CS
                   xxxxx....xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  59 gnsie....HGthvAGiaaan.apeegekngvapgakilsvkvldtsggsmetgteliraieeaae.dkvdvinmslgestslpktgrsiealainr 149
                            HGthvAGi aan    ++ + g apgak+ s++++  s+g  +t ++l+ ++ + +   +vdv+nms+g +    + g++ +  ++n+
    KIR65139.1 367 I--GIvestHGTHVAGITAANdMLGNSAFDGAAPGAKLVSARAC--SWGGGCTAAALTTGMADLVInRRVDVVNMSIG-GLPALNDGSNARSQLYNE 458
                   2..224688************999********************..999999999999999986665***********.44444444444444**** PP

                   HH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEEES..............TTSSB-TT--B-TT.......-EEEE-S-..CCCCCCC CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF
  Peptidase_S8 150 avnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvgayt..............tegkiapfSsrGpssdgklkpdivapGgn..ivstwsr 230
                   ++n +gv + iSaGN+g      + + +vg+ps ++nv++v+a                +++ +  fSsrGp  dg +kp i+apG++   ++tw+ 
    KIR65139.1 459 LINTYGVQLFISAGNSG------PGLNTVGDPSVADNVVSVAASIskdtwlgnygsvvaKDNALFNFSSRGPREDGGFKPNIAAPGSAisTAPTWQA 549
                   *****************......9******************9989******************************************666677766 PP

                   CCHHHTTTHH......EEEE-SHHHCHHHHHHHHHHHHHHHTT....--HHHHHHHHHCCS-EE......SSSSSSTT CS
                   xxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 231 qsnnsaglss......yqsmsGTSmAsPnaagaaAlllsalpk....ltpetvraallntAqdlgkadniesfaqGaG 298
                    +       +      yq+ +GTSmAsP aagaaAlllsa ++     tp+ +r+a+ ++A+++     +  +aqG+G
    KIR65139.1 550 GNPVPEA--GyplppgYQMLNGTSMASPQAAGAAALLLSAAKAtdkgVTPAALRRAVYTSAKPI---AGVATYAQGYG 622
                   6643333..2569**************************99999*****************998...46789999998 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.17
                   TTTST.....TCEEEEEESTTSSB-TT--B-TT........-EEEE-S- CS
                   xxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Peptidase_S8 181 pstsk.....nvitvgayttegkiapfSsrGpssd.gklkpdivapGgn 223
                   p+ts      + + v+a+++++  ++fS  G++    +  + ++ p g+
    KIR65139.1 759 PATSVvdfevSTVVVAATDVAKPAYSFSAEGSVERnSSTSYFVTVPPGA 807
                   4444233444778899999999999999999876545555555555555 PP

>> PPC  Bacterial pre-peptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.58   5.2e+03      24      38 ..     114     143 ..      69     170 .. 0.64
   2 ?   -3.0   0.2       1.9   1.7e+04      26      45 ..     286     306 ..     257     316 .. 0.60
   3 ?    2.5   0.1     0.037   3.3e+02       3      69 ..     797     873 ..     795     874 .. 0.61
   4 !   24.0   0.2   7.2e-09   6.5e-05       5      69 ..     952    1015 ..     951    1016 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.58
                 ................SE..EEEE-TT..-S CS
         PPC  24 i..............dld..Lylldsngtsv 38 
                 +              dld  ++l+d+  +++
  KIR65139.1 114 AkvlkaatlpgvaavDLDetIQLPDPA-PEA 143
                 044444444555567888889999988.544 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.9
                 SEEE..EE-TT..-SS-EE-ST CS
         PPC  26 ldLy..lldsngtsvaaydans 45 
                 +d +  l+d+  t++   dan+
  KIR65139.1 286 TDTFgiLYDAT-THDIRVDANG 306
                 33334344444.5444444444 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.037
                 EEEEEEE-TT-E.EEEEES-TT..SEEEEE-TT.......-SS-EE-STT-TT...S-TTS-.EE-SSSEEEEEEE. CS
         PPC   3 Dvysfevpagds.ltididggtidldLylldsn..g.t..svaaydansapsg...sdeyie.ftapqaGtYyvaVs 69 
                   y ++vp g   ++++++g+++ +  +    n  g +  s+a+ +++ + s+   ++++ + + +p aG++ ++V 
  KIR65139.1 797 TSYFVTVPPGAGaIQVNLSGIATGSQTRFIAFNpyGvPveSTASTACYTNFSNaaaCKPQERdYQNPIAGVWEFEVE 873
                 5799****88888****999998666665555532332334444344442222233444444577888888888886 PP

  == domain 4  score: 24.0 bits;  conditional E-value: 7.2e-09
                  EEEEE-TT-E.EEEEES-TT.....SEEEEE-TT..-SS-EE-STT-TTS-TTS-EE-SSSEEEEEEE. CS
         PPC    5 ysfevpagds.ltididggti...dldLylldsngtsvaaydansapsgsdeyieftapqaGtYyvaVs 69  
                  y +evpag    t  i +++    dldL+++ +  t+v      sa ++s e ++ t+p aGtY v V 
  KIR65139.1  952 YLVEVPAGAAsFTARIGNTADlgaDLDLFVFRGT-TEVGR----SADGDSEEAVTLTNPPAGTYRVLVD 1015
                  569*************999888889999999999.77777....5556699***************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 7413.23
//
Query:       KIR65140.1  [L=266]
Description: hypothetical protein TK50_06450 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.019   15.0   6.2      0.025   14.6   6.2    1.4  1  DUF2076         Uncharacterized protein conserved in bacteria
       0.09   12.2   2.5       0.17   11.3   2.5    1.4  1  SKG6            Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   6.2   2.8e-06     0.025     119     177 ..     128     196 ..      60     265 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.8e-06
     DUF2076 119 lgqeeqyaaqpgyaqqqaqpqygqpaaapq........p..ggGggFLggAlqtAAGVaGGvllangle 177
                 l +e++ + q +  ++ +qp++g p++ p         p     +   ++Al + AGV GG+l+a++l 
  KIR65140.1 128 LTREREVNVQGQTFRAGPQPGQGTPYYYPGgryqgrpvPagWYSTPWWKTALGAGAGVLGGMLIADALF 196
                 22222222222222235555555555555555544544234334579*******************985 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.5   1.9e-05      0.17      20      37 ..       5      22 ..       5      23 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.9e-05
        SKG6 20 VaViiivLlailifvrRR 37
                +aVi+++Ll++ ++++RR
  KIR65140.1  5 LAVILVALLVGGFVWWRR 22
                69***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2164.60
//
Query:       KIR65141.1  [L=928]
Description: phosphoenolpyruvate carboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.8e-285  948.5   0.0   3.2e-285  948.3   0.0    1.0  1  PEPcase      Phosphoenolpyruvate carboxylase
  ------ inclusion threshold ------
      0.015   15.7   0.0      0.093   13.2   0.0    2.5  1  Phage_TAC_6  Phage tail assembly chaperone protein, TAC


Domain annotation for each model (and alignments):
>> PEPcase  Phosphoenolpyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  948.3   0.0  3.6e-289  3.2e-285       2     795 .]     128     928 .]     127     928 .] 0.98

  Alignments for each domain:
  == domain 1  score: 948.3 bits;  conditional E-value: 3.6e-289
                 --EEEEE---TT--SSS--HHHHHHHHHHHHHHT-SS--HHHH..HHHHHHHHHHHHHHHH---B-SS---HHHHHHHHHHHHHHTHHHHHHHHHHHHH CS
     PEPcase   2 leielVlTAHPteivRrtilkkqrriaelleqldeaelteeer..eeleeqleeeiallwrtdelrqekptvldEvenglsyfeevlfeavPellrele 98 
                 l++++V+TAHPte++Rr+il+k r++a+ l++++++      +    ++++l+e ++l+w+tdelr  +p+++dE++n+++y+++ + ea P++l++l 
  KIR65141.1 128 LAVRPVFTAHPTEAARRSILSKLRAVADELDAETANAILYGASdeGPANRRLAELLDLMWQTDELRLDRPDPTDEARNAIYYLRDLYAEAAPQVLDDLA 226
                 789****************************999988765444227799************************************************** PP

                 HHHHHHTS.----T---EEEEE-TTTB-TT-TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---....----HHHHHTT-SSS............. CS
     PEPcase  99 ealkesfpelelpaasflrfgsWiGgDRDGNpnVtaevtrevlllqrelalekylkeveeLieeLslslelvevseellesleedkekleevyeelaer 197
                 ++l++ ++ ++ p+a++l+fg+WiGgDRDGNp+Vt++vt evl +q+e+ +  + +++e+Li+e+s+s +l  vs +l +sl++d ++l+ev+ ++++ 
  KIR65141.1 227 DTLRTLGV-ETSPTARPLTFGTWIGGDRDGNPFVTPQVTGEVLRIQHEHGIAATEAAMEHLINEVSVSRRLRGVSLDLSASLAADLDALPEVAPRFRRV 324
                 ***99999.666777************************************************************************************ PP

                 .TTSHHHHHHHHHHHHHHHHHHHHHHHHHT-.-----TT---SHHHHHHHHHHHHHHHHHTT-HHHHTTHHHHHHHHHHHTTTTSSEEEEEEEHHHHHH CS
     PEPcase 198 ykeepYRlklaelrkrLentrerleelaekeeeeleeeeayesaeelledLelikesLketgaklladgeledlirqvevfGlhLaklDiRqeserhee 296
                 ++eepYRlk  +++++L+ntrerl++ + +      + ++y+ a+el++dLel++ sL+++ ++l+a g+l+++ir+v++fGlhLa++D+R+++e+h+e
  KIR65141.1 325 NAEEPYRLKARCVKAKLANTRERLRRGTPHV-----PGRDYQGAAELIADLELLRASLARNAGQLTAVGRLASTIRTVSAFGLHLATMDVREHAEKHHE 418
                 ***************************9999.....99************************************************************* PP

                 HHHHHHHHTTS.--GGGS-HHHHHHHHHHHHH-SS--S-TT----HHHHHHHHHHHHHHHS.-...TTSEEEEEEET--SHHHHHHHHHHHHHTT-..- CS
     PEPcase 297 alaeileylglekdYaelseeervelLlreLeskrplipkelelseeteevldvlrviaelqeefgkeiietyviSmaeeasdvLevllLakeaglldk 395
                 +l+++++++g  +dY +l++ er++lL++eL+ +rpl + +++l+e++++++dv+++i+++q++fg+e+ie+y+iSm+  ++dvL+ ++La+eagl+d 
  KIR65141.1 419 VLTQLYAAVGEVSDYPSLTRLERTKLLADELTGRRPLSTLDTPLTESARKTFDVFSTIRDAQDRFGSEVIESYIISMTLGVDDVLAAVVLAREAGLVDV 517
                 *************************************************************************************************** PP

                 ....S---EEEEE-SHHHHHHHHHHHHHHHHSHHHHHHTTT...EEEEEE-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEE-SSTGGGS- CS
     PEPcase 396 aegaaelrvvPLfEtvedLknapevleellslplyrelvkksgelqevMlGYSDSnKdaGfltsnWelykaqealvkvaeeagvklrlFHGrGGsvgRG 494
                 ++g+a++ +vPL+Et ++L+++ e+l+ellslp+yr+lv+++g++qevMlGYSDSnK+aG+ ts+W++++aq+al++va+++gv+lrlFHGrGG+vgRG
  KIR65141.1 518 HSGRARIGFVPLLETPAELNAGGELLDELLSLPAYRSLVAARGDVQEVMLGYSDSNKEAGITTSQWSIHRAQRALRDVAARHGVHLRLFHGRGGTVGRG 616
                 *************************************************************************************************** PP

                 HHHHHHHHHTS-TTTTTT-EEEEE-GGGHHHHHSSHHHHHHHHHHHHHHHHHHHHS------.....HHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHH CS
     PEPcase 495 GgpayeailaqPpgtvngrikiTeQGEviaskyslpelalrnLelvtaavleaslleeaeekk....eeweeimeelsevsreaYrklvyeepdfveyF 589
                 Ggp++eailaqP gt++g ik+TeQGEvi++ky+lp+la++nLel++aavl+a+ll++a+++     e+w++ m+ +s++++++Yr+lv e+pd+ +yF
  KIR65141.1 617 GGPTHEAILAQPYGTLDGAIKVTEQGEVISDKYTLPALARENLELTMAAVLQATLLHTAPRQPaeqlERWDASMDVISDAAFRSYRSLV-EDPDLPAYF 714
                 ********************************************************99998888889**********************.********* PP

                 HHHS-HHHHHHSS-SSS------.---GGSS-HHHHHHHHHHTT--GGGTTTHHHHHHHH..HTTTTHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHH CS
     PEPcase 590 reaTPieeiskLnigSRPakRkk.kkglesLRAIPWvFsWtqsRlllpaWyGvgtalkevlekeeeklelLremykkwpffrtliskvemvlaKadlei 687
                  ++TP+e ++ LnigSRPakR +  +gl+ LRAIPWvF+Wtq+R+++p+W+Gvg++l ++  +e++  ++L em+++w+ffrt++s+vem+l+K+dl+i
  KIR65141.1 715 WASTPTELLGALNIGSRPAKRPNtGAGLSGLRAIPWVFGWTQTRQIVPGWFGVGSGLAAA--REAGLEDVLAEMHRNWHFFRTFLSNVEMMLTKTDLSI 811
                 *********************99899*********************************7..999999******************************* PP

                 HHHHHHHHS-GG.GHHHHHHHHHHHHHHHHHHHHHHT-SSTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH............TT----HHH CS
     PEPcase 688 akeYvqllvdkelrerlfeeireelertvelvleitgqkelldknpvlqrsvelRnayidPlnllQvelLkrlRqaeeek..........seeeeeell 776
                 a++Yv++lv k+ ++ +fe+i++e+e+t++ vl++t +  ll+++pvlqr++++R++y++Pl++lQv+lL+++R++ +            ++ ++ ++l
  KIR65141.1 812 ARRYVETLVPKK-LHPIFEKIEQEYELTKREVLAVTASPALLENSPVLQRTLAVRDTYLEPLHHLQVALLRQYRDSGAAGravatapggrRAPSDGTAL 909
                 **********99.899************************************************************997799*******9899999*** PP

                 HHHHHHHHHHHHHHH---- CS
     PEPcase 777 rdallltinGiaaGlrntG 795
                 ++all+t+nGiaaG+rntG
  KIR65141.1 910 ERALLTTVNGIAAGMRNTG 928
                 ******************9 PP

>> Phage_TAC_6  Phage tail assembly chaperone protein, TAC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     1e-05     0.093      18      52 ..     711     746 ..     710     748 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1e-05
  Phage_TAC_6  18 PeeFWalTPaELalllgaeaaga.apLsRadLdaLm 52 
                  P+ FWa TP EL  +l++  ++a +p + a+L+ L 
   KIR65141.1 711 PAYFWASTPTELLGALNIGSRPAkRPNTGAGLSGLR 746
                  999**************9999988888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (928 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.59
# Mc/sec: 4700.50
//
Query:       KIR65142.1  [L=353]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.042   13.0   5.0        1.1    8.3   0.0    2.7  3  ABC2_membrane_3  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   6.2e-05       1.1       9      90 ..      21     103 ..      16     133 .. 0.77
   2 ?   -2.6   8.0      0.12   2.2e+03     240     344 ..     155     256 ..     144     257 .. 0.75
   3 ?   -1.3   6.7     0.049   8.9e+02     238     342 ..     217     323 ..     187     326 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 6.2e-05
  ABC2_membrane_3   9 llPiilvlllglifsnsve..ddentpiavvdednsslsqqlvealea.spsvelvyevdseeeakkalkngdidgilvi.pkgfs 90 
                      l ++ l+++++ ++  +    +++++p++vv  d  + +q +++a+   ++++e  +e+d+ + a + l  ++++g+l+  p+g +
       KIR65142.1  21 LGTLALATGFIAAYVGALHdpTPRDVPVGVVLGD--QRAQAVMAAVRReTDKIE-PIEYDDPAAADDGLTGREVYGVLTStPEGGL 103
                      5566666666666554444448************..678889999998688899.*********************9987455444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.12
  ABC2_membrane_3 240 lllllfllfglayialgyllsslfknsetaqilifivil..llsgffgglfpledlpsalkwifsiiPffapglgllrlitgdplweillslii 331
                      l++ ++l ++la++alg+  +++ ++ + a + i ++    + +g+ g+l+    +   l ++   +P +a   +l   +  + +++  + ++ 
       KIR65142.1 155 LAVGYVLGGYLAATALGLRTGTAPRSLARAGLRIAAFAAyaVVLGVAGALV----VGPVLDVWHHDVPAVAAVGALAVFAAAM-IASAVQGWLG 243
                      344677777******************999888777777224444444444....4578999999999999888875555544.8888899999 PP

  ABC2_membrane_3 332 lalfavvylllal 344
                      l+++++v lll++
       KIR65142.1 244 LLGTGLVILLLVV 256
                      9999999999976 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.049
  ABC2_membrane_3 238 lglllllfllfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffapglgllrli....tgdplweill 327
                      + ++  +  l  +a+++++ ++       +t+ +++++v l     +gg++  e lp++l+   +++     ++++++ +        +w+++ 
       KIR65142.1 217 VPAVAAVGALAVFAAAMIASAVQGWLGLLGTGLVILLLVVL-GNPGSGGIYAPEFLPTWLRGMHRWNVPGLTTDLIKSAVyfdrR-SMGWPLAG 308
                      45555555555555555555555555555666665555554.6666999999999************************954421.24666666 PP

  ABC2_membrane_3 328 sliilalfavvylll 342
                        ++ a+ +v +l +
       KIR65142.1 309 LALWVAVGVVGLLTA 323
                      666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2343.12
//
Query:       KIR65143.1  [L=346]
Description: peptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-24   85.4   0.0    6.6e-24   84.3   0.0    1.5  2  Peptidase_S66   LD-carboxypeptidase N-terminal domain
    3.4e-20   72.8   0.0    5.3e-20   72.2   0.0    1.3  1  Peptidase_S66C  LD-carboxypeptidase C-terminal domain
  ------ inclusion threshold ------
      0.033   14.8   0.1        4.8    7.8   0.0    2.4  2  PIG-L           GlcNAc-PI de-N-acetylase


Domain annotation for each model (and alignments):
>> Peptidase_S66  LD-carboxypeptidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   1.1e-27   6.6e-24       1     121 []      16     131 ..      16     131 .. 0.92
   2 ?   -2.8   0.0       1.1   6.4e+03      44      55 ..     287     298 ..     241     314 .. 0.61

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 1.1e-27
                    EEEE-SSS-GGGSSH.H.HHHHHHHHH.HHCTEEEEEGCTC--TTTTCSS-HHHHHHHHHHHHC-TTECEEEES--SS-CHHCHHHH-HCCHHCS- CS
  Peptidase_S66   1 iaivapSsglkkeeeke.eleraievl.eelglevvlgksaaksagylagtdeeRaadLnealadpeikaiicarGGygaarllpyldfdaikknp 94 
                    +a+v+pS+gl +    +  +e ++++l ee+gle+v+ +++    + l +++++Ra+d  +a+ad++++a++++ GG++++ + p+ld + +++np
     KIR65143.1  16 VAVVSPSAGLPAV--FPhVYELGLRRLrEEFGLEPVEYPTT----RALGADPRDRARDVSAAFADQTVTAVLATVGGDDLITVTPHLDDAVLRANP 105
                    89*******9755..555*********6678*****87766....35788********************************************** PP

                    -EEEE-CCHHHHHHHHHHCHTBSEEE- CS
  Peptidase_S66  95 kiliGySDiTalhlalyaktglvtlhg 121
                    k+++GySD T+l+++l++ +g+v +hg
     KIR65143.1 106 KPYFGYSDNTNLLNHLHR-LGIVAYHG 131
                    *****************9.7******8 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.1
                    TTCSS-HHHHHH CS
  Peptidase_S66  44 gylagtdeeRaa 55 
                    ++ a  d++Raa
     KIR65143.1 287 QRRAYADAQRAA 298
                    244556666665 PP

>> Peptidase_S66C  LD-carboxypeptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.0   8.8e-24   5.3e-20       1     123 [.     205     334 ..     205     335 .. 0.87

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 8.8e-24
                     EEEEEEEEHHHHHCCTTSTTS--.-TT..EEEEEE--TT..HHHHHHHHHHHHCTSTTGGG--EEEEEE--.......G.....CC...---HHH CS
  Peptidase_S66C   1 eGrliGGnlsvlasllgtpylpe.kdlkgkILflEdvse..spyridrmLtqlkeagvldkvkGivlGrftkp.....eek..eeeeekeeykea 85 
                     +Gr +GGnl++l+ ll+t+     +d  g +L++E+ +e  s+ ++ r+L++l+e+g+l ++ ++++Gr +       + +  +++++ + ++ a
      KIR65143.1 205 RGRTWGGNLEILHWLLATDRVGGvADHAGEVLIVETSEElpSATEVYRILRNLGERGLLAGFPAVLVGRAKAWdfdrpH-TpeQRRAYADAQRAA 298
                     69****************998777899*********55599***************************98766776541.145777788888888 PP

                     HHHHHHT-GGGTTS-EEEEESESSSBS---EEETSEEE CS
  Peptidase_S66C  86 leevlaeiledlkiPvlynldiGHtspnltlplGakae 123
                     ++++lae+    ++ v++++d GHt+p+ ++p+G+++ 
      KIR65143.1 299 VTRALAEY--APDAVVVFDVDLGHTDPQQIVPYGGEVV 334
                     88888754..578*********************9985 PP

>> PIG-L  GlcNAc-PI de-N-acetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0083        49       2      16 ..      91     105 ..      90     108 .. 0.89
   2 ?    7.8   0.0   0.00081       4.8      88     119 ..     292     322 ..     249     327 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0083
                 EEESSTTHHHHHHHH CS
       PIG-L   2 lvlAHpDDellfagg 16 
                  v++H DD++l a++
  KIR65143.1  91 TVTPHLDDAVLRANP 105
                 69*********9987 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00081
                 CHHHHHHHHHHHHHH--SEEEEE-TTTTH-HH CS
       PIG-L  88 edellddlaklieryrPdvvltldpegddhpD 119
                  d  + ++++++++y+Pd+v+++d + + h D
  KIR65143.1 292 ADAQRAAVTRALAEYAPDAVVVFDVDLG-HTD 322
                 5566778999**************9998.887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2854.93
//
Query:       KIR65144.1  [L=75]
Description: hypothetical protein TK50_06470 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-16   59.6   0.0    1.9e-16   59.4   0.0    1.0  1  GntR             Bacterial regulatory proteins, gntR family
    6.3e-05   22.8   0.0      9e-05   22.3   0.0    1.2  1  MarR_2           MarR family
    9.8e-05   22.2   0.0    0.00015   21.6   0.0    1.3  1  HTH_11           HTH domain
    0.00025   21.2   0.0    0.00031   20.9   0.0    1.2  1  PaaX             PaaX-like protein
      0.001   18.7   0.0     0.0015   18.1   0.0    1.2  1  HTH_41           Helix-turn-helix domain
  ------ inclusion threshold ------
      0.026   14.1   0.0      0.028   14.1   0.0    1.3  1  HrcA_DNA-bdg     Winged helix-turn-helix transcription repres
      0.029   14.7   0.0       0.03   14.7   0.0    1.1  1  Rrf2             Transcriptional regulator
       0.22   11.6   0.0       0.27   11.3   0.0    1.1  1  Cob_adeno_trans  Cobalamin adenosyltransferase
        0.3    9.4   0.0       0.33    9.2   0.0    1.0  1  DUF505           Protein of unknown function (DUF505)


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   9.6e-20   1.9e-16       2      64 .]       7      69 ..       6      69 .. 0.97

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 9.6e-20
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                ++++ ++L+ +I sg   pG+kLPs  eL+aef+Vsr++vR A + L+a+glve  +g G+fV
  KIR65144.1  7 KQRLIDALTSRIESGDNPPGAKLPSGTELCAEFDVSRQVVRSAVDWLKARGLVEGAPGAGVFV 69
                68899*********************************************************9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   4.5e-08     9e-05      17      56 ..      23      64 ..      18      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 4.5e-08
                TTTS.EE.EHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 17 rpgr.dl.tvgelarrlglsksavsrilkrLvaaGLverrpg 56
                +p++ +l + +el++++++s++ v  +++ L a+GLve  pg
  KIR65144.1 23 NPPGaKLpSGTELCAEFDVSRQVVRSAVDWLKARGLVEGAPG 64
                55556555899**************************98776 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   7.5e-08   0.00015      17      54 ..      31      67 ..      28      68 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 7.5e-08
      HTH_11 17 sgeeLAeeLnvSrrtvrrdIkaLeelgvpIesepgrGY 54
                sg eL  e++vSr++vr  ++ L++ g  +e+ pg G 
  KIR65144.1 31 SGTELCAEFDVSRQVVRSAVDWLKARG-LVEGAPGAGV 67
                89*************************.9999999986 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.5e-07   0.00031      23      55 ..      29      61 ..      19      68 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.5e-07
        PaaX 23 lgsLirllaelGiseslvRaalsRlakaGwlvr 55
                l s  +l+ae+++s ++vR+a+  l+++G++ +
  KIR65144.1 29 LPSGTELCAEFDVSRQVVRSAVDWLKARGLVEG 61
                445569***********************9976 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   7.8e-07    0.0015       3      36 ..      26      59 ..      25      61 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.8e-07
      HTH_41  3 GdRlktIeelakeleLSvGlvQkALklLeddkai 36
                G++l++ +el+ e+++S+  v +A+  L++ + +
  KIR65144.1 26 GAKLPSGTELCAEFDVSRQVVRSAVDWLKARGLV 59
                99****************************9988 PP

>> HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor, HrcA DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.4e-05     0.028      26      58 ..      32      64 ..       4      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
  HrcA_DNA-bdg 26 geeiAevlkrneGtvRNqlqsLkalgLvegvpG 58
                  g+e+ +  +     vR  + +Lka gLveg pG
    KIR65144.1 32 GTELCAEFDVSRQVVRSAVDWLKARGLVEGAPG 64
                  56677777777889******************9 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.5e-05      0.03      26      62 ..      30      66 ..       7      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-05
                B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT- CS
        Rrf2 26 vsseeiaerqnispsylekilakLrkaglvksvrGkg 62
                 s +e+ +++++s+++++  +  L+  glv+   G+g
  KIR65144.1 30 PSGTELCAEFDVSRQVVRSAVDWLKARGLVEGAPGAG 66
                4668999***************************984 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00014      0.27      92     130 ..       8      49 ..       2      50 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
                      HHHHHHHHHHS--...EESEEES-SSHHHHHHHHHHHHHHHH CS
  Cob_adeno_trans  92 ekeideleaelpp...lksfilpggspaaaalhvaRtvcRra 130
                      ++ id+l+++++         lp+g++++a+++v R v+R a
       KIR65144.1   8 QRLIDALTSRIESgdnPPGAKLPSGTELCAEFDVSRQVVRSA 49 
                      455666666666422245689*******************87 PP

>> DUF505  Protein of unknown function (DUF505)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00017      0.33     487     522 ..      33      67 ..      23      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00017
      DUF505 487 eelveevdeleeeevrealeklearglvevlpdgnv 522
                  el++e+  + ++ vr a+++l+arglve  p  +v
  KIR65144.1  33 TELCAEF-DVSRQVVRSAVDWLKARGLVEGAPGAGV 67 
                 6888888.788999***************8887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 595.73
//
Query:       KIR65145.1  [L=82]
Description: hypothetical protein TK50_06475 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       162  (0.00903564); expected 358.6 (0.02)
Passed bias filter:                      151  (0.00842211); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 704.62
//
Query:       KIR65146.1  [L=1226]
Description: transcription-repair coupling factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-32  110.8   0.1    1.1e-31  109.3   0.1    1.9  1  CarD_CdnL_TRCF  CarD-like/TRCF domain
      1e-23   83.5   0.0    2.8e-23   82.1   0.0    1.8  1  TRCF            TRCF domain
    3.2e-21   75.3   0.0    6.6e-21   74.3   0.0    1.5  1  UvrB_inter      UvrB interaction domain
      2e-18   66.8   0.4    2.4e-17   63.2   0.5    2.3  2  DEAD            DEAD/DEAH box helicase
    2.3e-17   63.3   0.4    4.9e-15   55.8   0.0    2.3  2  Helicase_C      Helicase conserved C-terminal domain
    2.1e-06   27.9   0.0    3.6e-06   27.1   0.0    1.4  1  ResIII          Type III restriction enzyme, res subunit
     0.0042   17.4   0.2      0.017   15.4   0.2    2.1  1  AAA_22          AAA domain
     0.0043   15.8   0.0     0.0058   15.4   0.0    1.2  1  SNF2_N          SNF2 family N-terminal domain
  ------ inclusion threshold ------
      0.036   14.1   0.0        0.1   12.6   0.0    1.8  1  UB2H            Bifunctional transglycosylase second domain
      0.095   12.4   0.0       0.24   11.1   0.0    1.7  1  IstB_IS21       IstB-like ATP binding protein
       0.21   10.8   0.1       0.34   10.1   0.1    1.2  1  DUF2075         Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> CarD_CdnL_TRCF  CarD-like/TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   0.1     7e-35   1.1e-31       1      96 []     541     640 ..     541     640 .. 0.97

  Alignments for each domain:
  == domain 1  score: 109.3 bits;  conditional E-value: 7e-35
  CarD_CdnL_TRCF   1 lkvGDyVvhedhGiGriegiekrevegaekeylvleyadk....kgdklyvPvdqldlirkyiskeepkldklggkrwektkekakkgvkeeaae 91 
                     lk GD+Vvhe+hGiGr++++++r+v+ga++eylv+eya +    +gd+l+vP+dqld++++y++ e+p+l+k+gg++w+k k++a+k+vke+aa+
      KIR65146.1 541 LKAGDHVVHEQHGIGRYVELVQRTVNGASREYLVIEYAASkrgqPGDRLFVPTDQLDQLSRYVGGEQPTLHKMGGADWQKSKARARKAVKEIAAQ 635
                     799***********************************95588988*****************999***************************** PP

  CarD_CdnL_TRCF  92 lvkly 96 
                     l++ly
      KIR65146.1 636 LIQLY 640
                     ***98 PP

>> TRCF  TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   1.7e-26   2.8e-23       1      82 [.    1069    1150 ..    1069    1160 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 1.7e-26
        TRCF    1 ldvdalipeeYipdeserlelYkriasieteeeldeleeeLiDrFGklpeevenLlevarlkllakklgiekikekkkklei 82  
                  l+vda++p++Y+  e++rle+Y+++a++++ + l+e+ +e++Dr+G++p +v+nL++var++lla+++g+++++ + k+l++
  KIR65146.1 1069 LPVDAHLPHDYVGVERLRLEMYRKLAEARDADRLREVVAEMTDRYGEPPAPVQNLVAVARFRLLARRYGLTDVSMQGKHLRF 1150
                  79************************************************************************99998876 PP

>> UvrB_inter  UvrB interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   4.1e-24   6.6e-21       2      80 ..     168     245 ..     167     261 .. 0.93

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 4.1e-24
  UvrB_inter   2 elkvgqkidreellrkLvelqYerndvelkrGtFrvrGdtveifpasaeevairieffgdeiesireidpltgkslekl 80 
                 +l  g++ d ee++r+L+++ Y r d+++krG+F+vrG ++++fp++ +e++ r+ef+gde+e+ir++  ++++++e +
  KIR65146.1 168 RLAAGDEADLEEVARRLTDMAYARVDLVTKRGEFAVRGGILDVFPPT-DEHPSRVEFWGDEVEEIRTFAVADQRTIEAA 245
                 6899*******************************************.8**************************9975 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.25     4e+02      42      66 ..     131     160 ..     118     191 .. 0.80
   2 !   63.2   0.5   1.5e-20   2.4e-17       1     173 [.     670     831 ..     670     834 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.25
                 S.....TTSTS-EEEEEESSHHHHHHHHHH CS
                 x.....xxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  42 t.....kgktgpkalivePtreLaeqtlnn 66 
                       +g+tgp  ++v+P r+L + +l+ 
  KIR65146.1 131 PdaadaHGRTGPLRVVVAPVRSLLQPQLKG 160
                 35555578999************9988775 PP

  == domain 2  score: 63.2 bits;  conditional E-value: 1.5e-20
                 -HHHHHHHHHHHTT......CEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT..STSEEEEEET.TSSHHHH CS
                 xxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx.xxxxxxx RF
        DEAD   1 tdiQaeaiplilgg......gdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky..idlrvlliig.gvaardq 90 
                 t+ Q +ai+++ ++       d l+++++G+GKT++++ +++++v     ++g+++ +++Pt+ L++q++n++ +++++  +++r l+ ++  ++ ++ 
  KIR65146.1 670 TPDQLAAIEEVKRDmeqtvpMDRLICGDVGYGKTEIAVRAAFKAV-----QDGKQVAVLVPTTLLVQQHYNTFAERMSQfpVQIRQLSRFQtPKESERT 763
                 567777888777443344556888******************999.....7899************************744667777544425555666 PP

                 HHHHHTT.CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HHH CS
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
        DEAD  91 lskldng.vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kdv 173
                 l+ +  g vdiv+gt+  l+  +     +++++ ++++DE +r+  +  +++++++ +++            v+ +SAT+  +++
  KIR65146.1 764 LEMVADGtVDIVIGTHRLLQTAT-----RFKSLGLVIVDEEQRFGVE-HKEHLKTLRASV-----------DVLSMSATPIpRTL 831
                 66665445********7776633.....39****************9.999999977777...........39******986766 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.014        23      10      74 ..     711     779 ..     702     798 .. 0.78
   2 !   55.8   0.0     3e-18   4.9e-15      14     110 ..     875     974 ..     865     975 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.014
                 HHHTTTTSEEEEEESSHHHHHH.HHHH...HHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESG CS
  Helicase_C  10 lkleeeggkilifvntidrlek.vkll...lekkgikvavlhgelpqnereeileqfnkgesdvLiatd 74 
                 +k  ++g+++ + v+t+  +++  + +    +++ +++  l    + +e e++le   +g++d++i t 
  KIR65146.1 711 FKAVQDGKQVAVLVPTTLLVQQhYNTFaerMSQFPVQIRQLSRFQTPKESERTLEMVADGTVDIVIGTH 779
                 47889999********99887674444222246689999999999******************999985 PP

  == domain 2  score: 55.8 bits;  conditional E-value: 3e-18
                 TTTSEEEEEESSHHHHHH.HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.SSHHHHHHHHTTSSS CS
  Helicase_C  14 eeggkilifvntidrlek.vklllekk.gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.rnvtsyiqriGRtgR 109
                  ++g++    n+++++ek ++ ++e   + +vav hg++  +  e+++  f ++e+dvL++t+++e Gidip++n++i   ++  ++++++q +GR+gR
  KIR65146.1 875 LRDGQVFYLHNRVESIEKaARRIRELVpEARVAVAHGQMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADlLGLAQLHQIRGRVGR 973
                 589999999*****999887777444479******************************************************778************* PP

                 T CS
  Helicase_C 110 a 110
                 +
  KIR65146.1 974 G 974
                 7 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   2.2e-09   3.6e-06       5     169 ..     670     826 ..     667     828 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2.2e-09
                 -HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.......GEEEESSS-B--.... CS
      ResIII   5 reyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke...igkkvsgdkkka..ke 98 
                  + Q  aie+++  ++++     li    G GKT +a++++ +  + gk  ++ +lvp++ l++q +++f++ +s+   +    + + + ++ ++  ++
  KIR65146.1 670 TPDQLAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGK--QVAVLVPTTLLVQQHYNTFAERMSQFPVQirqLSRFQTPKESERtlEM 766
                 5789999****999998889999***********************977..9******************88777644333442222222222225557 PP

                 .....-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---SEEEEEESS- CS
      ResIII  99 kdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswreilekfkeavllglTATp 169
                  ++ + +i++ t   l+ +           + ++  ++i+DE  r+g  ++ ++++    +  +l ++ATp
  KIR65146.1 767 VADGTVDIVIGTHRLLQTAT----------RFKSLGLVIVDEEQRFGV-EHKEHLKTLRASVDVLSMSATP 826
                 78888888888888888887..........555666***********9.55555544445577999****9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2     1e-05     0.017       9     122 ..     693     826 ..     692     841 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee.erpevv....fvtlpsst.sskdllrellralglelka.......erlsseellealeqalrarav... 91 
                 +++G +G GKT  + r + +++++ k+     p+++    +++  ++  s+  +  + l+ ++ ++++       +        +   + +  +++   
  KIR65146.1 693 LICGDVGYGKTEIAVRAAFKAVQDGKQVAvLVPTTLlvqqHYNTFAERmSQFPVQIRQLSRFQTPKESertlemvA--------DGTVDIVIGTHRllq 783
                 69************99999998776665575555553355333333333555555555566666666644444442........222222222222455 PP

      AAA_22  92 .......ielliiDEaqhlr..seealeeLrsllnl...srkg 122
                         +l+i+DE q++   ++e+l++Lr  +++   s ++
  KIR65146.1 784 tatrfksLGLVIVDEEQRFGveHKEHLKTLRASVDVlsmSATP 826
                 55556669***********7755*******9999987554444 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.5e-06    0.0058      98     221 ..     676     832 ..     339     839 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.5e-06
                 -...........................................EEEE--H.HHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------E CS
                 x...........................................xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  98 p...........................................tLivvPa.slldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydv 152
                 +                                           + ++vP+  l++q +n++++ +s+  +++   +  ++ k++++++      + d+
  KIR65146.1 676 AieevkrdmeqtvpmdrlicgdvgygkteiavraafkavqdgkqVAVLVPTtLLVQQHYNTFAERMSQFPVQIRQLSRFQTPKESERTLEMVADGTVDI 774
                 0555555555555555555555555555555555555555555566899997889****************99999998877777777777777789** PP

                 EEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 153 vittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsle 221
                 vi t   l++ +        +k+     v++DE ++++ ++++  ++++  ++   + +++TPi++ le
  KIR65146.1 775 VIGTHRLLQTAT-------RFKS--LGLVIVDEEQRFGVEHKEHLKTLR--ASVDVLSMSATPIPRTLE 832
                 ****99999554.......5555..568************999999999..89999*********9886 PP

>> UB2H  Bifunctional transglycosylase second domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.4e-05       0.1       1      42 [.     169     210 ..     169     242 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.4e-05
        UB2H   1 LypGaalsaaqleqeLellgYrkvsnvtrpGeyavsgnriel 42 
                 L +G++ +++++ + L+++ Y +v+ vt+ Ge+av+g+ +++
  KIR65146.1 169 LAAGDEADLEEVARRLTDMAYARVDLVTKRGEFAVRGGILDV 210
                 6789999******************************98887 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00015      0.24      51      88 ..     693     730 ..     675     756 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
   IstB_IS21  51 vllGpsGvGKshlaialgveavraglsvlfvrvedLve 88 
                 +++G  G GK+ +a+  + +av++g++v  +  + L+ 
  KIR65146.1 693 LICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLV 730
                 69*************************98655444433 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00021      0.34       5     102 ..     693     804 ..     692     820 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00021
     DUF2075   5 lVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsef..................kkaeekke 85 
                 l+ G+ G GKt +++++++++   ++++++++l+    lv+  ++++a++   +++  ++++ls f ++ ++                   +  +   +
  KIR65146.1 693 LICGDVGYGKTEIAVRAAFKA--VQDGKQVAVLVPTTLLVQQHYNTFAERM--SQFPVQIRQLSRFQTPKESErtlemvadgtvdivigthRLLQTATR 787
                 688******************..**************************99..5555555555555444442223333466677777777444555566 PP

     DUF2075  86 epkedvvivDEAhrllt 102
                  + + +vivDE +r   
  KIR65146.1 788 FKSLGLVIVDEEQRFGV 804
                 67777777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.80u 0.24s 00:00:01.04 Elapsed: 00:00:00.40
# Mc/sec: 9094.06
//
Query:       KIR65147.1  [L=267]
Description: hypothetical protein TK50_06490 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   20.8   0.8    0.00051   19.9   0.2    1.7  2  SurA_N_3   SurA N-terminal domain
     0.0028   17.5   0.2     0.0092   15.9   0.1    1.8  2  SurA_N_2   SurA N-terminal domain
  ------ inclusion threshold ------
       0.15   11.9   0.1       0.86    9.4   0.0    2.1  2  SmpA_OmlA  SmpA / OmlA family


Domain annotation for each model (and alignments):
>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.2   8.6e-08   0.00051      22     112 ..       8     109 ..       2     124 .. 0.75
   2 ?   -2.8   0.0      0.79   4.7e+03      95     108 ..     201     214 ..     196     217 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 8.6e-08
    SurA_N_3  22 ila.FvlwGvgsylsgsg...nsvakVngekIsraefqqayrrqleqlrqql.......ggnldaelldelglrqqvldqlidealllqeakklglsvs 109
                 ++a ++ +Gv s+   ++   + +a V++ k s + +++ y++ + +++  +       g + ++e+l++   rq+vl+ l++ +l +  ++++g++v 
  KIR65147.1   8 AAAsVAALGVLSLAACGKaapDVAAYVGDAKYSVDRVDEIYDEAQAKYADAIraqagqgGATPSPEQLRSSVTRQDVLNLLVSIELGKRVVAEQGVTVA 106
                 33325555655544444422266*************9999999887776555444555444999**********************************9 PP

    SurA_N_3 110 dee 112
                 de 
  KIR65147.1 107 DEV 109
                 975 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.79
    SurA_N_3  95 alllqeakklglsv 108
                 ++l+qea+k g s+
  KIR65147.1 201 NALQQEAEKAGASI 214
                 57888888887655 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.5e-06    0.0092      39     121 ..      27     116 ..       2     128 .. 0.69
   2 ?   -2.0   0.0       0.5     3e+03      98     110 ..     202     214 ..     199     216 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.5e-06
    SurA_N_2  39 ssnevaeVnGekIslqefqqaveearq.......qlqqqlgenfdeseedeaqlreqvldqlvseklleqeaeklGltvsdeelqdaiqg 121
                   +++a V++ k s++  ++ ++ea++         + q g + ++++ +++  r+ vl+ lvs +l +  + + G+tv de   +++++
  KIR65147.1  27 APDVAAYVGDAKYSVDRVDEIYDEAQAkyadairAQAGQGGATPSPEQLRSSVTRQDVLNLLVSIELGKRVVAEQGVTVADEVKPEQLEQ 116
                 556666666666666666666666666333322133333566677777788*****************************9977666666 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.5
    SurA_N_2  98 lleqeaeklGltv 110
                  l+qeaek+G ++
  KIR65147.1 202 ALQQEAEKAGASI 214
                 6899999999776 PP

>> SmpA_OmlA  SmpA / OmlA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.24   1.4e+03      10      25 ..      73      88 ..      69      88 .. 0.84
   2 ?    9.4   0.0   0.00014      0.86      11      27 ..     166     182 ..     160     185 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.24
                HT--TT-BHHHHHHHH CS
   SmpA_OmlA 10 dqlkpGmtkeqVryll 25
                +ql+   t+++V++ll
  KIR65147.1 73 EQLRSSVTRQDVLNLL 88
                7888899*****9987 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00014
                 T--TT-BHHHHHHHH-S CS
   SmpA_OmlA  11 qlkpGmtkeqVryllGs 27 
                  ++pGmt +qVr+  G+
  KIR65147.1 166 AIQPGMTVAQVRQAFGE 182
                 79***********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2100.84
//
Query:       KIR65148.1  [L=329]
Description: nucleoside triphosphate hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-23   81.6   0.0    7.9e-23   80.4   0.0    1.7  1  MazG       MazG nucleotide pyrophosphohydrolase domain
  ------ inclusion threshold ------
       0.19   12.1   1.1       0.56   10.5   0.5    2.1  2  TetR_C_25  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> MazG  MazG nucleotide pyrophosphohydrolase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   8.8e-27   7.9e-23       1      74 []     137     213 ..     137     213 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 8.8e-27
                 --HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHH...HH---HHHHHHHHHHHHHHH-GGGG CS
        MazG   1 qtpetllaylleEvgEvaeaIkkedrdeleeELGDvLlqvlflaniaee...eggidledvaetileKlerRhphvf 74 
                 qt+ +l+ yl+eE++E  +aI  +d+d+l+eELGDvLlqvl++a++aee    ++++++dva  +++K++rR phvf
  KIR65148.1 137 QTHRSLAGYLIEECYEAYDAIGADDTDALREELGDVLLQVLLHARMAEElpdGARWTVDDVAGGLVDKMIRRNPHVF 213
                 89**********************************************9988899*********************8 PP

>> TetR_C_25  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.45     4e+03      62      86 ..     168     191 ..     165     207 .. 0.60
   2 ?   10.5   0.5   6.3e-05      0.56      33      92 ..     256     315 ..     252     320 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.45
   TetR_C_25  62 slGalllelqlheeedptdlravlr 86 
                 +lG +ll++ lh+ + +++l++  r
  KIR65148.1 168 ELGDVLLQVLLHA-RMAEELPDGAR 191
                 5777888887777.44444444444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 6.3e-05
   TetR_C_25  33 eayleegvaaGtirpsrdpkarArylalsslGalllelqlheeedptdlravlreylerm 92 
                  ++l+++ +aG+  p     a Ar+ a + lGa ll+  ++++    d +a+lr+ ++ +
  KIR65148.1 256 AKILDRAGRAGLTVPLPAADAEARLGAEARLGAELLAAVAAARAADLDPEAALRRATQAY 315
                 67899999*******************************999999*********998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2474.33
//
Query:       KIR65149.1  [L=540]
Description: hypothetical protein TK50_06500 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.5e-102  343.7   4.6     4e-102  343.6   4.6    1.0  1  DUF885    Bacterial protein of unknown function (DUF885)


Domain annotation for each model (and alignments):
>> DUF885  Bacterial protein of unknown function (DUF885)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.6   4.6  2.2e-106    4e-102       1     528 [.      20     536 ..      20     537 .. 0.93

  Alignments for each domain:
  == domain 1  score: 343.6 bits;  conditional E-value: 2.2e-106
                 HHHHHHCT--S.TT-----SHHHHHHHHHHHHHHHHHHCT.S-CCHH.HHHHHHHHHHHHHHHHHHHHHHHSHHHHTT-CCCCH......HHHHHHHHC CS
      DUF885   1 PesatslGiydkddrlpdlspaaeaaraarlraalaeldaaidrdkl.seerldldllrerleleletaeagypleqlralagp......vqqlpslls 92 
                 P  ats+G +++ddrlpd+s++a aa +a lr+a + l ++id+d+l ++e +d++ll   +++el      ++ +++r+++++         l+ ll+
  KIR65149.1  20 PGLATSAGDHRYDDRLPDVSAEAVAADQAMLRDAADVL-SEIDPDSLdTDESVDHALLTALVDREL------FESDEIRSHEWDplrhnpAPLLHALLA 111
                 778*****8444**************************.88******999****************......999999999999999888889999*** PP

                 GTTSSCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT.-S-HHHHHHHHHHHHHHHGTSSHHCCCHH.CCCCCC...HHHHHHHHHH.HHHHHHHHHH CS
      DUF885  93 eepfateedleaylarlaavpaaldqaranlregaaaglvpprrqvekvieqlrgllagaaaeasalvaplaeleaekealraeleaalaeavkpayae 191
                 + +++++ +l ++++rlaavp+al++ara+lr         pr+++e++++q++g++a  ++e +     la    e++ l +++e a a+a+++a++e
  KIR65149.1 112 RPFAPADVRLTSLAGRLAAVPDALATARATLR-------DVPRVHAETAVGQFTGAAALVRDEVPR---LLA----EEPGLHDRVEPA-ATAAIAALDE 195
                 *******************************9.......79*****************98888776...444....4589********.********** PP

                 HHHHHHHCCHHHS-BSS....HHHHHHHHHHHHHSSSS-HHHHHHHHHHHHHHHHHHHHHHHHHH.HH.-...HHHHHHHHHCH-GGGEEESHHHHHHH CS
      DUF885 192 ladfleeellpaarkda.pd.GeelYarllrsftttdltpeeihelglaelariraemeaiakev.gf.k..gdlaevlaalrtdprfyleetdagree 284
                 + ++l++ l+  a +   p+ G+++++++l+++++t+l ++e+ ++++a+l+r++ae+++ a e+ g     ++++++l+ l+++     +++     +
  KIR65149.1 196 FVAWLRAGLAADAGPGRdPRlGRRRWEARLWHTLDTELGAAEVQRRAWANLDRVTAELREAAVELvGGpAddETVRRALDLLAAEH----PDD----HT 286
                 ******99988887555689*********************************************988557779********9554....344....79 PP

                 HHHHHHHHHHHHCCHHHCCT.---TTS-GCCCEEEEEE-SS.-SEEEE---..TTSSS-EEEEE.....SS-C..HHCC....ETTCCHHHHHHHTTTT CS
      DUF885 285 llaaaraaiaeldaklpehf.gllpkaplevrrvpefiapsasgayytpps..adgsrpgiyyv.....nlpd..vesf....pkyeletlaaHEgvPG 369
                 +++ a  +++e+ +++++h+  +l + p++++++pef +++ ++ay+++p+  +    p++y++     ++p+  vesf    +++++ +l++HE++PG
  KIR65149.1 287 IVDLASVTLDEATDFVRAHDlVTLVDDPCVIQEMPEFARGV-AVAYCDSPGplEIAPVPTFYCIaptpaDWPAarVESFyreyNDHMIRNLTVHEAMPG 384
                 *****************99999999****************.78*******8755699999999**99999999999999999**************** PP

                 HHHHHHHHHCCGGS-HHHHHT.H-H.HHHHHHHHHHHHHHHHTTCCGCHHHHHHHHHHHHHHHHHHHHHHHHHCSCB--HHHHHHHHHHCS-S-HHHHH CS
      DUF885 370 HhlQialaqeledlprfrrllgfas.ayvEGWAlYaErlmdelGlyddplerlgmlkaellraarlvvDtglHlakgwtreqaidfleentalteaeae 467
                 H+lQ+a+a ++ +++r+r l    s  +vEGWA+Y+E+lm+ lG++     rl++lk++l++++++++D  +H+   +++++a+++++ + +++e+ea+
  KIR65149.1 385 HFLQLAHARRHVGPTRVRAL--ARSgPFVEGWAVYTEELMAGLGYGG-LPVRLQQLKMQLRMTINALLDQLVHC-DDLSEAEAMALMTGRGFQEEGEAA 479
                 ********************..5676*********************.566**********************9.************************ PP

                 HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHTSTCGG--HHHHHHHHHHC-S--HHHHHHH CS
      DUF885 468 sevdRyivwpGqalsYkvGeleilelRekaekalgdkfdlkaFHdavLsqGslPldvLeea 528
                 ++++R++++++q+++Y+vG+ e+ e+ +       +  +++++Hda+L++ ++P+++L++ 
  KIR65149.1 480 GKWRRALLTSTQLSTYFVGYSEVAEIAALR----PAGVSVREWHDAMLAHDCPPPRHLRTL 536
                 ************************997764....577*********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3722.71
//
Query:       KIR65150.1  [L=280]
Description: NUDIX hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-18   66.5   0.1    4.8e-18   65.5   0.1    1.5  1  NUDIX          NUDIX domain
    1.1e-05   25.0   2.9    1.7e-05   24.3   2.9    1.4  1  zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
    0.00071   20.2   0.0     0.0018   18.9   0.0    1.7  1  NUDIX-like     NADH pyrophosphatase-like rudimentary NUDIX do
  ------ inclusion threshold ------
       0.07   13.2   0.3       0.11   12.5   0.3    1.2  1  DZR            Double zinc ribbon


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.1   1.1e-21   4.8e-18       4     129 ..     144     268 ..     141     270 .. 0.73

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 1.1e-21
                 EEEEEEEEETT..SE...EEEEEESSSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.EEECSG CS
       NUDIX   4 ravgvvllnek..ge...vLlvrrskkpfpg.WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfl.eevege 95 
                 +av v ++++   g    +Llvr++ + +++ W+l++G+ve+gE++e+AArRE+ EE+Gl    l+++g+ ++ +++      +  +l  f+  +++ +
  KIR65150.1 144 AAVLVAITRPGptGGpdeLLLVRHA-SGPTAlWALVAGFVEAGESLEDAARREVGEEVGLGLGRLTYFGSQPWALSG------PGVLLAGFTaTAADTT 235
                 566777777775522566******9.666667***************************977999999966555555......5556677775333333 PP

                 CSST.STTTEEEEEEEEHHHHHHHHTHCTHHHHHH CS
       NUDIX  96 lepn.denevsevrwvpleellkeklaaesrkllp 129
                  ep  d  e+ e+rw+pl+ l  ++  ++++++ +
  KIR65150.1 236 AEPVvDGRELTEARWFPLDRL--PAELPPAYSISR 268
                 333368***************..444445555555 PP

>> zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   2.9   3.9e-09   1.7e-05       1      30 [.     108     137 ..     108     138 .. 0.95

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.9e-09
  zf-NADH-PPase   1 rthrFCgrCGaptepaeggwarvCpaCgle 30 
                    rthr+Cg C a+ + ++g+ +r+Cp C+l 
     KIR65150.1 108 RTHRWCGACRAELADVPGEQSRRCPGCDLY 137
                    89*************************985 PP

>> NUDIX-like  NADH pyrophosphatase-like rudimentary NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   3.9e-07    0.0018      38     100 ..      50     104 ..      21     105 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3.9e-07
  NUDIX-like  38 seelvfLGldeggapvfAvdvsareeeikeaeeeggafvelRavmlalsaedaalaaqArall 100
                  +  v LG+++g  p + +d +++++       ++g++++ R++++al+a  a la++A a+l
  KIR65150.1  50 GTGWVPLGTLDG-VPAWGADATDDQP-------PEGRWRSWRSLAAALPAPLADLAGRALAVL 104
                 555688999999.7777777777666.......9***************************98 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   2.5e-05      0.11      12      35 ..     110     135 ..     105     142 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.5e-05
         DZR  12 arfCseCgtklkavaa..edrCpsCg 35 
                  r C++C+++l  v+   ++rCp C+
  KIR65150.1 110 HRWCGACRAELADVPGeqSRRCPGCD 135
                 689********99998999******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1966.38
//
Query:       KIR65151.1  [L=427]
Description: enolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.6e-131  435.7   0.0     1e-130  435.3   0.0    1.1  1  Enolase_C  Enolase, C-terminal TIM barrel domain
    5.5e-57  191.6   0.3    1.1e-56  190.6   0.3    1.5  1  Enolase_N  Enolase, N-terminal domain
    1.9e-10   40.7   0.1    2.8e-10   40.1   0.1    1.3  1  MR_MLE_C   Enolase C-terminal domain-like
    1.8e-05   24.0   0.1    3.5e-05   23.1   0.1    1.4  1  MAAL_C     Methylaspartate ammonia-lyase C-terminus


Domain annotation for each model (and alignments):
>> Enolase_C  Enolase, C-terminal TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  435.3   0.0  2.3e-134    1e-130       2     291 ..     140     419 ..     139     423 .. 0.98

  Alignments for each domain:
  == domain 1  score: 435.3 bits;  conditional E-value: 2.3e-134
                 -EE-EE-EEEEE-GGGSSSS--SSEEEEE-TT-SSHHHHHHHHHHHHHHHHHHHHHCC.GGGG-B-TTS-B----SSHHHHHHHHHHHHHHCT-TC..T CS
   Enolase_C   2 lvlPvPalnvinGGshagnklalqefmilPvgassfkealrlGaevyhklksvlkkkygksatnvGdeGGfaPnlqsnkealdliveaiekaGykg..k 98 
                 + lPvP++n++nGG ha++++++qefmi+P+ga++f++alr Gaevyh lksvlkkk+   +t +GdeGGfaPnl +n+ aldli+ea++kaGy+   +
  KIR65151.1 140 HLLPVPMMNILNGGAHADSNVDVQEFMIAPIGAPTFRDALRSGAEVYHALKSVLKKKG--LSTGLGDEGGFAPNLPTNAAALDLIAEAVDKAGYRLgtD 236
                 679*******************************************************..99********************************9888* PP

                 BEEEEE--GGGCEETCTTEEECTTTTTT..GGCEEEHHHHHHHHHHHHHHS-EEEEES-S-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHH CS
   Enolase_C  99 vkialdvassefykekdkkydldfkeeesdkskkltseqladlykelvkkyPivsiedpldeddweawkklteelgdkvqivGddltvtnpkrlkeaie 197
                 ++ aldva++ef+  +d++y +++ +         ++e+++++y++lv +yPivsiedpl+eddw++w++lt+ +gd++qivGddl+vtnp+r++++i 
  KIR65151.1 237 IVFALDVAATEFF--DDGTYTFEGAA--------KSAEEMSNYYTKLVGDYPIVSIEDPLAEDDWSGWATLTAAIGDRIQIVGDDLFVTNPQRIARGIA 325
                 *************..889**988777........7899************************************************************* PP

                 CT--SEEEE-HHHH-SHHHHHHHHHHHHHTT-EEEEE--SC--S--HHHHHHHHCT-SEEE---S-SHHHHHHHHHHHHHHHHHGCC-EE-GGG CS
   Enolase_C 198 kkaanalllkvnqiGsltesleavklakeagygvvvshrsGetedttiadlavglsaGqiktGaparserlakynqllrieeelgekakyaGkk 291
                 +kaana+l+kvnqiGslte+l+av+la++ag+  ++shrsGetedttiadlav++ +GqiktGapars+r+akynqllrieeel+++a+yaG+ 
  KIR65151.1 326 EKAANAVLVKVNQIGSLTETLDAVELAHRAGFKCMMSHRSGETEDTTIADLAVATGCGQIKTGAPARSDRVAKYNQLLRIEEELADAARYAGAG 419
                 ********************************************************************************************85 PP

>> Enolase_N  Enolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.6   0.3   2.4e-60   1.1e-56       1     131 []       4     134 ..       4     134 .. 0.99

  Alignments for each domain:
  == domain 1  score: 190.6 bits;  conditional E-value: 2.4e-60
                 EEEEEEEEEE-TTS-EEEEEEEEETTC-EEEEE--B-BSSSSSS-B----SSTTSGGGT--HHHHHHHHHTHHHHHTTSBTT-HHHHHHHHHHHH-STT CS
   Enolase_N   1 IkkvkareildSrGnpTvevevttedgalgraavpsGaStgekealelrDgdkkrylgkgvekavenvnekiapaligldvtdqeeiDkllielDgten 99 
                 I+ + areildSrGnpTvevev ++dg+++raavpsGaStg++ea+elrDgdk+rylgkgvekav+n+++ki ++lig+++++q+ iD+ +i++Dg++n
  KIR65151.1   4 IEGIVAREILDSRGNPTVEVEVGLDDGTIARAAVPSGASTGAFEAVELRDGDKDRYLGKGVEKAVANIEDKIVDQLIGYEASEQRLIDQKMIDIDGSDN 102
                 7899*********************************************************************************************** PP

                 -TTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH CS
   Enolase_N 100 ksklGaNailavSlAvakaaAkakelplyryl 131
                 k +lGaNail+vSlAvakaaA ++el l+ryl
  KIR65151.1 103 KGELGANAILGVSLAVAKAAAGSAELSLFRYL 134
                 *******************************7 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.1   6.3e-14   2.8e-10      39     173 ..     224     382 ..     177     412 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 6.3e-14
                 HHHTT.....TSTSEEEEE-TTT.......SBHHHHHHHHHHH........GGGTESEEESSSSTTTHHHHHHHHHH.HH.SSEEEESTTSSS.HHHHH CS
    MR_MLE_C  39 eavgp.....gddvdlmvDanqa.......wdlatAirvarel........eeldllwlEEPvppeddleglaelra.ra.sipiaagEslys.radfr 114
                 eav +     g+d+ +++D+ +        ++ + A + a+e+         ++ +  +E+P+   dd+ g a+l+a +  +i+i+++    + +++++
  KIR65151.1 224 EAVDKagyrlGTDIVFALDVAATeffddgtYTFEGAAKSAEEMsnyytklvGDYPIVSIEDPLAE-DDWSGWATLTAaIGdRIQIVGDDLFVTnPQRIA 321
                 333223334466677777777666655555677777777777766666665678999*******9.78********986689******987666***** PP

                 HHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCSS..HHHHHHHHHHHHTT CS
    MR_MLE_C 115 elleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgsg..glglaaslhlaaai 173
                 + ++++a+ +v ++v+++g +te+++ ++la+ +g ++++ + sg    +++a l +a+  
  KIR65151.1 322 RGIAEKAANAVLVKVNQIGSLTETLDAVELAHRAGFKCMMSHRSGetEDTTIADLAVATGC 382
                 *************************************999884332266666666666554 PP

>> MAAL_C  Methylaspartate ammonia-lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   7.8e-09   3.5e-05     130     220 ..     298     384 ..     255     390 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 7.8e-09
      MAAL_C 130 reklkekgikvelvaDe.WcntledirefvdaeaadlvqiktPDlGginntieavlyckekgvgaylGGscnetdvsarvsvhvalatrpaq 220
                 ++   + g ++++v D+ +  + + i + ++++aa++v +k+  +G++++t++av  +++ g ++++   + et+ +  +++++a+at+  q
  KIR65151.1 298 TA---AIGDRIQIVGDDlFVTNPQRIARGIAEKAANAVLVKVNQIGSLTETLDAVELAHRAGFKCMMSHRSGETEDT--TIADLAVATGCGQ 384
                 33...3466799**99835666789*************************************************976..5778888887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2872.04
//
Query:       KIR65152.1  [L=168]
Description: N-acetylglutamate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-12   46.0   0.0    7.1e-12   45.6   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.3e-08   35.2   0.1    2.2e-08   34.4   0.1    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    7.3e-06   26.1   0.1    7.6e-05   22.8   0.1    2.1  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    1.1e-05   25.4   0.0    1.6e-05   24.8   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0056   16.8   0.0     0.0083   16.2   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
      0.046   13.9   1.0      0.094   12.9   1.0    1.7  1  Acetyltransf_6   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   2.4e-15   7.1e-12      32     116 ..      43     120 ..      13     121 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 2.4e-15
                     TC.EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE.EEEEETTEHHHHHHHHHTT CS
  Acetyltransf_1  32 ae.gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikki.vlaveedndaairlYeklG 116
                     +  ++ va + ++++G+  l+  ++   + a+i+ +aV+p+yrg+ +G + + +l++ are g+ +i vl ++e      r++  +G
      KIR65152.1  43 DVqEFRVAADADTVVGCGALHVMWE---DLAEIRTVAVDPAYRGRRIGHRIVGELIDAAREIGVARIfVL-TFE-----TRFFGSFG 120
                     334667788999*************...9***********************************999444.333.....45555555 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.1   7.4e-12   2.2e-08       5      76 .]      47     123 ..      35     123 .. 0.75

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 7.4e-12
                     EEEEEETTEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH.....TTSEEE.EEEEEETHHHHHHHHHHTTEEE CS
  Acetyltransf_7   5 vfVaeddgkivGfialslld...aeitrlaVdpeyrgkGiGraLlea.....aekgii.leqlelnaekaikfYeklGFee 76 
                     + Va d + +vG+ al++ +   aei  +aVdp+yrg+ iG++++       +e g+  ++ + + +    +f+ ++GF+e
      KIR65152.1  47 FRVAADADTVVGCGALHVMWedlAEIRTVAVDPAYRGRRIGHRIVGElidaaREIGVArIF-VLTFE---TRFFGSFGFRE 123
                     5589999******999999999888888****************96424433114433222.23333...78*******86 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   2.5e-08   7.6e-05      73     127 ..      69     123 ..       7     124 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.5e-08
                     EEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--SSHHHHHTTT-EE CS
  Acetyltransf_9  73 aagvtgVavapehrgrgvlskLlaraleemreegqplsllfPssipiYrrfGyei 127
                      a +  Vav+p +rgr + ++++ ++++ +re g+  ++   ++ +++++fG++ 
      KIR65152.1  69 LAEIRTVAVDPAYRGRRIGHRIVGELIDAAREIGVARIFVLTFETRFFGSFGFRE 123
                     466789***********************************************86 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   5.3e-09   1.6e-05      32     110 ..      46     125 ..      18     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 5.3e-09
  Acetyltransf_10  32 lllvaeeggkivGvielrdgs....hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavg 110
                       + va + +++vG+++l   +    +i  ++Vdp+yrg+ ig++++ +++++a++ g + ++ v   +   +f+ ++GF++++
       KIR65152.1  46 EFRVAADADTVVGCGALHVMWedlaEIRTVAVDPAYRGRRIGHRIVGELIDAAREIGVA-RIFV--LTFETRFFGSFGFREID 125
                      577899999***9997755555577****************************877766.6665..56778999999999884 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.8e-06    0.0083      24      58 ..      69     103 ..      46     117 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.8e-06
  Acetyltransf_CG  24 vldfthTeVpeelrGkGiAkkLvkaalddareegl 58 
                        ++  + V++++rG+ i+ ++v + +d are g 
       KIR65152.1  69 LAEIRTVAVDPAYRGRRIGHRIVGELIDAAREIGV 103
                      56788899***********************9886 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.0   3.1e-05     0.094      76     131 ..      50     106 ..       8     116 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.1e-05
  Acetyltransf_6  76 lrldgrpv.AvalglrsgdrlyywlggydpelaklspgllllweliedaaeeGlrrf 131
                     +   +++v ++al+++++d +    +++dp++++ ++g  ++ eli++a+e G++r+
      KIR65152.1  50 AADADTVVgCGALHVMWEDLAEIRTVAVDPAYRGRRIGHRIVGELIDAAREIGVARI 106
                     4444555515789999*************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1147.38
//
Query:       KIR65153.1  [L=309]
Description: exopolyphosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-58  196.9   0.1    5.6e-58  196.6   0.1    1.0  1  Ppx-GppA  Ppx/GppA phosphatase family
  ------ inclusion threshold ------
       0.15   12.0   0.5       0.37   10.7   0.5    1.7  1  DUF2474   Protein of unknown function (DUF2474)
        1.3    9.5   4.2        6.4    7.2   1.2    2.8  2  FtsA      Cell division protein FtsA


Domain annotation for each model (and alignments):
>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.6   0.1   9.4e-62   5.6e-58      11     270 ..      30     297 ..      22     308 .. 0.91

  Alignments for each domain:
  == domain 1  score: 196.6 bits;  conditional E-value: 9.4e-62
                 EEEEEEEEE--CCCCCHCCSSC-HHHHHHHHHHHHHHHHHCCCTTGCCEEEEEEHHHHHSTTHHHHHHHHCCCCSS-EEEE-HHHHHHHHHHHHHHHT- CS
    Ppx-GppA  11 qivarekrkvrLaeglnesgrlqeeaiertisaLkefaellqkfkvenvrvVATsalRdavNadeFlarvkkevglkveiisgeeEarliylgvvssll 109
                  +++r+ ++vrL++g++++grl++eaiert+ aL+ +a  ++ ++v +vr+ ATsa Rda Na +F a+v++ +g++ e+++g eEarl++ g+v+ l+
  KIR65153.1  30 VDLSRRMEIVRLGQGVDKTGRLAPEAIERTRVALASYAAEIDTLGVDRVRMCATSASRDASNAGDFRAMVERTLGVAPEVVTGDEEARLSFTGAVRGLP 128
                 67999*********************************************************************************************7 PP

                 --S..SEEEEEEETTEEEEEEEET.TEEEEEEEES--CCHHHHHHSGCCC--HHHHHHHHHHHHHHCTTTHHHHCCCE..HHCCCCCCCHCCHHCHHHH CS
    Ppx-GppA 110 ekg..rglviDiGGGStElvlgee.kevsklvSlplGavrlterfltddpltkeeveaarkavekeleevkdevkkeg..ewtrlvgtsgtisalaelt 203
                 +++  + lviDiGGGStE v+g++   v++++S+++G+vr+ter l  dp++  +++aa++ +   + ++ ++v+ +   + + l+g+++t+ a+ae  
  KIR65153.1 129 ADAlePYLVIDIGGGSTEFVVGTRaGGVEAAISMDIGCVRMTERHLLGDPPGLDQIAAAQADITVAVDRALEAVPGRQaaTLVGLAGSVTTVVAIAEGL 227
                 6653389***************99779**********************************************99888667788888999999999887 PP

                 HHCT.S...SCEEEHHHHHHHHHHHCTSSCHHHHHSTTS-CCHHCTHHHHHHHHHHHHHHCT-SEEEEES CS
    Ppx-GppA 204 elhgek...gyeitaeeleeliekllqlkkeeelklagvsdeRadvivagalilsavlealeieaviise 270
                 ++++ +   + ++++  + e+ + ll +++e++l++  ++++Radvi agal+l  ++e    + v  se
  KIR65153.1 228 TEYEPErihHARVSYGAVAEVTADLLAKTREQRLAIPVMHPGRADVIGAGALVLRTIMERAGMSTVVASE 297
                 7777558999**********************************************99976666665555 PP

>> DUF2474  Protein of unknown function (DUF2474)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   6.3e-05      0.37      22      39 .]     275     292 ..     274     292 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.3e-05
     DUF2474  22 gvvAlllRllMtaAGlkt 39 
                 g+ Al+lR +M+ AG++t
  KIR65153.1 275 GAGALVLRTIMERAGMST 292
                 5669************97 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.04   2.4e+02       1      17 [.       2      18 ..       2     117 .. 0.84
   2 ?    7.2   1.2    0.0011       6.4       2      19 ..     137     154 ..     136     208 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.04
                EEEEE-SSSEEEEEEET CS
                xxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaed 17
                a++D G++++ ++va+ 
  KIR65153.1  2 AAIDCGTNSIRLLVADL 18
                68999999999999875 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0011
                 EEEE-SSSEEEEEEETTE CS
                 xxxxxxxxxxxxxxxxxx RF
        FtsA   2 lvDiGagktdvavaedga 19 
                 ++DiG+g+t+++v+ + +
  KIR65153.1 137 VIDIGGGSTEFVVGTRAG 154
                 8************98744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2175.53
//
Query:       KIR65154.1  [L=603]
Description: hypothetical protein TK50_06550 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-24   87.3   0.0    1.8e-18   67.4   0.0    2.1  2  DUF1996         Domain of unknown function (DUF1996)
  ------ inclusion threshold ------
       0.02   14.9   0.1        2.1    8.3   0.1    2.2  2  DNA_photolyase  DNA photolyase
       0.23   11.6   2.6       0.68   10.1   0.2    2.3  2  HR1             Hr1 repeat


Domain annotation for each model (and alignments):
>> DUF1996  Domain of unknown function (DUF1996)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.5e-07    0.0027       2      53 ..      91     142 ..      90     158 .. 0.82
   2 !   67.4   0.0   3.1e-22   1.8e-18      68     231 ..     434     582 ..     420     583 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.5e-07
     DUF1996   2 Pivspgev..sshvHtivGgsafnasltyeelrkskctscevkeDkSnYWvptL 53 
                 P+ +pg    ++h+H++vG+ a++a++   ++ +++ t+c++  D+S+Y+ p +
  KIR65154.1  91 PVAQPGIRngAEHLHDFVGNLAIDANTPD-AVLAASGTTCRN-GDRSSYFWPVV 142
                 88899977679**************9855.556688999986.68999998876 PP

  == domain 2  score: 67.4 bits;  conditional E-value: 3.1e-22
     DUF1996  68 kggllvYYllekkkekkvtafpkgfrmiaGdptlrekslaqkaisftcleseekeeaeeetkelpkktkkkcas..glraeilfpsCwdgknldspdhk 164
                  +++l+ Y    ++++kvta+p+ +r ++Gd++ +++  a++++++tc   +++      +++ p      c++  +++    fp Cwdg+n+ds++h+
  KIR65154.1 434 PSKVLIEYRG--NPGAKVTAMPRFLRALTGDAKPTSRGPANARATWTCSGFADRL-----SDRYP--I---CPDgsQVMRVQDFPGCWDGRNTDSENHR 520
                 4466777877..56789******************99999999******997433.....55566..3...644125666679**************** PP

     DUF1996 165 shvaypskveesegkCpeshpvrlpqlfyeviwdtekfnkkedgksqpfvlsngdktGyglHaDFin 231
                 +h+a+    + ++g Cp+++ v++pql +++ +d+ +  + + +  +   + +++++ ++ H DF+n
  KIR65154.1 521 AHLAFA---DPTTGACPQGF-VAIPQLRISISYDIPRAVQLRGQ-YALDSFPEENHNPFSDHNDFVN 582
                 *****5...4569*******.**************975433333.2333566677789*******98 PP

>> DNA_photolyase  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1   0.00036       2.1      44      82 ..     177     215 ..     155     227 .. 0.85
   2 ?    4.2   0.0    0.0063        38      51      94 ..     297     342 ..     282     349 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00036
                     CHHHHHHHHHHHHHHHHHHHHTT--EEEEESSHHHHHHH CS
  DNA_photolyase  44 gaarvdfllesLadLdeeLrelgirLvvrrgdpadvlpe 82 
                      a  +d + + La+Ld++L++ + rL   rg++ + l +
      KIR65154.1 177 PASARDSVRRDLAALDRQLASANARLAASRGRIDQRLNQ 215
                     566788999***********************9888765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0063
                     HHHHHHHHHHHHHHTT--EEEEESS..HHHHHHHHHHHCTECEEEE CS
  DNA_photolyase  51 llesLadLdeeLrelgirLvvrrgd..padvlpelakelgasavva 94 
                     + ++L  Ld++++e + rLv  +g+  p+ +l +++  l+ ++v +
      KIR65154.1 297 VNRNLDLLDQQIAEANERLVTTKGQggPNFALNAIVGPLQSKRVAT 342
                     5689999*****************9888888888888888887765 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2     0.091   5.4e+02      37      59 ..     188     211 ..     178     220 .. 0.51
   2 ?   10.1   0.2   0.00011      0.68      42      64 ..     292     314 ..     291     318 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.091
         HR1  37 rqeaeselsesnskielLreqL.e 59 
                 +++ + +l ++n +++  r ++ +
  KIR65154.1 188 LAALDRQLASANARLAASRGRIdQ 211
                 344444444444444444444444 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00011
         HR1  42 selsesnskielLreqLeelqas 64 
                 s l+e n++++lL +q++e + +
  KIR65154.1 292 SALDEVNRNLDLLDQQIAEANER 314
                 789****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4077.84
//
Query:       KIR65155.1  [L=62]
Description: hypothetical protein TK50_06555 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.027   14.3   0.3      0.067   13.0   0.3    1.6  1  Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)


Domain annotation for each model (and alignments):
>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   3.7e-06     0.067      14      51 .]      15      52 ..       8      52 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.7e-06
  Phage_AlpA 14 glsrstiYrlikdgeFPkkvkLGvrsVgWlesEIdeWi 51
                g+s+  +Y + + ++FP +v    +  +Wl++++++Wi
  KIR65155.1 15 GISKQRVYVITSHRNFPEPVADLMQGKVWLKADVQAWI 52
                999****************986667778*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 445.62
//
Query:       KIR65156.1  [L=100]
Description: hypothetical protein TK50_06560 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 792.13
//
Query:       KIR65157.1  [L=110]
Description: PadR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-19   68.0   0.2    6.4e-19   67.7   0.2    1.1  1  PadR      Transcriptional regulator PadR-like family
  ------ inclusion threshold ------
       0.03   14.1   0.3        1.2    8.9   0.1    2.1  2  DUF4872   Domain of unknown function (DUF4872)
      0.097   12.6   0.1        4.9    7.1   0.0    2.2  2  TrmB      Sugar-specific transcriptional regulator TrmB
       0.27   11.0   1.7        2.9    7.8   0.1    2.4  2  SHOCT     Short C-terminal domain


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.2   1.4e-22   6.4e-19       1      74 [.      15      86 ..      15      87 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 1.4e-22
                HHHHHCCS-EEHHHHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHH CS
        PadR  1 iLalleeqpsyGyeiikeleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrela 74
                +La+l+e++ yGy+i ++l+e   gl e+ ++s+Y +L+rL + gl++++ ++s++gp rkyY l++aGr++l+
  KIR65157.1 15 VLAVLREEDGYGYDILRRLREA--GLDEVGDASVYGTLRRLFAAGLLTTYVVPSESGPHRKYYSLNAAGRDQLT 86
                8*********************..***********************************************997 PP

>> DUF4872  Domain of unknown function (DUF4872)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1    0.0099        44      82     113 ..      12      43 ..       4      53 .. 0.89
   2 ?    8.9   0.1   0.00027       1.2     100     144 ..      50     102 ..      47     109 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0099
     DUF4872  82 alrqlvrmiEkaGTGGglFRrLyadFlqeaae 113
                 +l+ l+ + E+ G G  + RrL +++l+e+ +
  KIR65157.1  12 DLAVLAVLREEDGYGYDILRRLREAGLDEVGD 43 
                 789999***********************865 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00027
     DUF4872 100 FRrLyadFlqeaaellgdea........laelseamteaadaWtelAalaaea 144
                  RrL+a++l     + +++          a+  +++t+++++W+++A+++ + 
  KIR65157.1  50 LRRLFAAGLLTTYVVPSESGphrkyyslNAAGRDQLTRSGKLWRSFATTMDTL 102
                 5666666665555555555444455554567789**************99765 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.013        57      40      51 ..      27      38 ..      26      43 .. 0.92
   2 ?    7.1   0.0    0.0011       4.9      34      54 ..      41      61 ..      39      79 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.013
                HHHHHHHHHCTS CS
        TrmB 40 YevLrsLedkGl 51
                Y++Lr+L ++Gl
  KIR65157.1 27 YDILRRLREAGL 38
                9**********8 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0011
                SSCHCHHHHHHHHHHCTSEEE CS
        TrmB 34 vprskvYevLrsLedkGlVer 54
                v  ++vY +Lr+L  +Gl ++
  KIR65157.1 41 VGDASVYGTLRRLFAAGLLTT 61
                56789************9765 PP

>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.3     0.037   1.7e+02       4      14 ..      28      38 ..      28      38 .. 0.86
   2 ?    7.8   0.1   0.00064       2.9       5      16 ..      49      60 ..      48      62 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.037
       SHOCT  4 ekLkeLyarGe 14
                ++L++L+++G+
  KIR65157.1 28 DILRRLREAGL 38
                589*****996 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00064
       SHOCT  5 kLkeLyarGeIt 16
                +L++L+a+G++t
  KIR65157.1 49 TLRRLFAAGLLT 60
                69*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 831.37
//
Query:       KIR65158.1  [L=228]
Description: dienelactone hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-46  156.7   0.0    6.8e-46  156.5   0.0    1.0  1  DLH            Dienelactone hydrolase family
    0.00013   21.5   0.0     0.0016   17.9   0.0    2.0  2  Peptidase_S9   Prolyl oligopeptidase family
     0.0019   18.2   0.2     0.0057   16.6   0.0    1.8  2  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
  ------ inclusion threshold ------
       0.02   14.5   0.3      0.023   14.3   0.3    1.1  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
      0.023   13.4   0.0      0.034   12.8   0.0    1.1  1  AXE1           Acetyl xylan esterase (AXE1)


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   0.0   1.9e-49   6.8e-46       2     215 ..      15     225 ..      14     227 .. 0.90

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 1.9e-49
         DLH   2 daylatpkna.kkpvvvviqeifGvndnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevstkk 99 
                 ++yla+p      p+v+viqe++G+  +i+ +++r+ae+G+valaPd+Y ++    ++++ea+r+l +l  ++      +d+  a +yl+ +pev  +k
  KIR65158.1  15 EGYLAIPSGGaANPAVIVIQEWWGLVPHIRSVADRFAEAGFVALAPDFYHGES--TGEPDEARRLLMGLQMDE----AAKDIAGAAEYLAGRPEVA-GK 106
                 68******9999****************************************9..799999999996666555....555555888*******666.** PP

         DLH 100 vgvvGfCmGGalalllaaevpevdaavafYGlsp..ekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsre. 195
                 vg vGfC GG lal +a+  +++ a+++fY++ p  + + e a+ + +  +++  eeD   +a  v++ + a++aa+ ++ l  Ypg  HaF+nd+r+ 
  KIR65158.1 107 VGCVGFCAGGSLALWSATLSERIVATAGFYPMLPweKMRPEWADYAGKSAIIHCSEEDGTSAAPGVQTARAAIEAAGGTCTLYDYPGSRHAFFNDDRPe 205
                 *******************************5551133446678889999*********************************************9997 PP

         DLH 196 syneeaaedawervlelfkq 215
                  +++ a + aw+r+lelf++
  KIR65158.1 206 AFDQRASASAWARTLELFRA 225
                 99****************96 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.5e-07    0.0016       2     106 ..      42     143 ..      41     155 .. 0.82
   2 ?    1.5   0.0     0.048   1.7e+02     151     205 ..     161     217 ..     149     220 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.5e-07
                   ---HHHHHHHCCT-EEEEE--TTSSTTHC..HHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEES CS
  Peptidase_S9   2 sfsselqlladrGyvvvvanirGsggyGe..afhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaev 96 
                   +++s++  +a++G+v +++++  ++  Ge  + ++ + + + ++ ++D+  aae+la +  v + ++++ G  +GG l+++ ++    l + +va +
    KIR65158.1  42 HIRSVADRFAEAGFVALAPDFYHGESTGEpdEARRLLMGLQMDEAAKDIAGAAEYLAGRPEV-AGKVGCVGFCAGGSLALWSAT----LSERIVATA 133
                   66777778999*********88777777533788889999********************99.789*****************9....445577777 PP

                   E---CCCHHC CS
  Peptidase_S9  97 pvvdvlryds 106
                   +++ +l + +
    KIR65158.1 134 GFYPMLPWEK 143
                   7777776655 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.048
                   ETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-S.STTSSHHHH.HHHHHHHHHH CS
  Peptidase_S9 151 GlaDdrvppaealklvaaLqkkgknvlllifpdegH.gvgkprakv.eelarllaFl 205
                   +++D         +  aa + +g +  l  +p+++H  ++++r ++ ++ a+  a++
    KIR65158.1 161 SEEDGTSAAPGVQTARAAIEAAGGTCTLYDYPGSRHaFFNDDRPEAfDQRASASAWA 217
                   444544444444445556668888999*********555555555577777777775 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.6e-06    0.0057       9      50 ..      93     133 ..      91     139 .. 0.92
   2 ?   -1.7   0.0      0.64   2.3e+03     193     211 ..     209     227 ..     202     228 .] 0.84

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.6e-06
                 HHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSSSEEEEE CS
      BAAT_C   9 ainyllrhpkvkkdkigllGiSkGgelalllasflkkisavv 50 
                 a++yl  +p+v+  k+g +G + Gg lal  a+ ++ i a+ 
  KIR65158.1  93 AAEYLAGRPEVA-GKVGCVGFCAGGSLALWSATLSERIVATA 133
                 789*********.9**********************999885 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.64
                 HHHHHHHHHHHHHHHHHH- CS
      BAAT_C 193 akAqedsWkkilkFlkkhl 211
                  +A   +W+++l+ ++ +l
  KIR65158.1 209 QRASASAWARTLELFRAKL 227
                 689999******9998776 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.3   6.5e-06     0.023      50     127 ..      47     131 ..      15     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.5e-06
                    GHHHHHTT-EEEEEE-TTSTTS-S---TT........TTTHHHHHHHHHHHHHHCTTEEEEEEEEEECHHHHHHHHHCTT--TTEE CS
  Peptidase_S15  50 dkvfvarGYavVvqdvrGtggSeGeftvg........dsdeaedgadvidWlakqpwsnGkVgmtGiSYlGttqllaaatgvpalk 127
                    ++ f++ G++ +  d   +g+S+Ge + +        +++ a+d a + + la+ p+  GkVg++G+  +G ++l  a+   + ++
     KIR65158.1  47 ADRFAEAGFVALAPDFY-HGESTGEPDEArrllmglqMDEAAKDIAGAAEYLAGRPEVAGKVGCVGFCAGGSLALWSATLSERIVA 131
                    34489999999999987.899999999999999999889999********************************999986554444 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.5e-06     0.034     157     208 ..      89     139 ..      85     143 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.5e-06
                 HHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHH-SS-SEEEEES-SS CS
        AXE1 157 DavrlveivaslpevDeeRvavlGasqGGalalavaalekrikavvadyPfL 208
                 D++ ++e +a+ pev   +v+ +G   GG+lal  a+l++ri a++  yP L
  KIR65158.1  89 DIAGAAEYLAGRPEVA-GKVGCVGFCAGGSLALWSATLSERIVATAGFYPML 139
                 7788888888899986.579******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1765.10
//
Query:       KIR65159.1  [L=237]
Description: uracil-DNA glycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-26   91.9   0.0    4.7e-26   91.6   0.0    1.1  1  UDG          Uracil DNA glycosylase superfamily
  ------ inclusion threshold ------
       0.16   11.9   0.2        0.3   11.0   0.2    1.4  1  Stealth_CR3  Stealth protein CR3, conserved region 3


Domain annotation for each model (and alignments):
>> UDG  Uracil DNA glycosylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.0   5.3e-30   4.7e-26       1     152 [.      53     228 ..      53     231 .. 0.86

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 5.3e-30
                 HHC-CTT-SEEEEESSTCHH.HHHHSSSS.-.STT--HHHHHHHCCCCCCCHHG........CTEEEEESSS....SECGCTTCCCCTCCHHHHHHHHH CS
         UDG   1 pgegppdakvvivGeaPgae.edatglpFsg.ragnllrkllneaglkrdlese........qgvyitnvvkcrppgnrdtptsaeikacaplleeeie 89 
                 pg+g +da++ i+G aP a+ +++tg+ F+g r+g+ l ++l++agl+++++s+        ++  i  +v+c+pp n+  pt+ae + cap+l++e++
  KIR65159.1  53 PGFGIADARIGILGLAPAAHgGNRTGRIFTGdRSGDVLFAALHRAGLANQPTSVaaddglalRDTRIFAAVRCAPPDNK--PTPAERDTCAPWLHREVA 149
                 7999**********************************************9999***********************99..****************** PP

                 HHH..SSEEEEESHHHHHH..............HHHHSCESCCCSCT...SEEEEES-SSTTTTTTTTSHHHHHHHHHH CS
         UDG  90 llk..prlivllGktaakall............geklgklrgklleak..irvlplphPsplnrnffksnpelkaeawe 152
                 l++   r++v+lG+ a+ a                +  + +g++   +  + +l ++h s +n+ +++ +p +++++++
  KIR65159.1 150 LIRptLRVVVALGAFAWAAWWpalrevygvrppSPRPAFGHGAHWSGTavPALLGCYHVSQQNTFTGRLTPGMLDDVFA 228
                 ***66677***********854445544333321122244444444449999*************99999999998885 PP

>> Stealth_CR3  Stealth protein CR3, conserved region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   3.4e-05       0.3      18      34 ..      29      45 ..      28      59 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.4e-05
  Stealth_CR3 18 rfpeelartashrFRsm 34
                 ++ ee+art+++ FR++
   KIR65159.1 29 AWREEVARTRRAAFRDQ 45
                 6**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1686.20
//
Query:       KIR65160.1  [L=193]
Description: hypothetical protein TK50_06595 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0024   17.9   4.0     0.0033   17.4   4.0    1.2  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   4.0   1.9e-07    0.0033      27      98 ..      18      80 ..       1      89 [. 0.58

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.9e-07
  Phage_holin_3_6 27 keeakragsgagllgaagvlallalllllval...alalaalwlaalivaavllvlagvlalvglkklkkakplp 98
                     +e a+r g+ +g+l    +la+ ++l+++v +   a++l            +++v+agvlal +++++ +a ++p
       KIR65160.1 18 QERAARGGRVGGALK---ALAIAGALTAVVVAglrAVGL---------QLSLWVVVAGVLALFAVRRVTAALAPP 80
                     333334443333333...333333333333322247777.........7789**************999954322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1391.63
//
Query:       KIR65161.1  [L=335]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-64  213.4   0.0    1.5e-63  212.5   0.0    1.5  1  AAA_3            ATPase family associated with various cellul
    1.1e-19   70.0   2.6    2.9e-19   68.7   2.6    1.7  1  AAA_lid_2        AAA lid domain
    4.7e-12   46.1   0.0    9.9e-12   45.0   0.0    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
      7e-05   22.0   0.0     0.0001   21.5   0.0    1.2  1  MCM              MCM P-loop domain
    0.00017   22.0   0.0    0.00058   20.3   0.0    1.9  1  AAA              ATPase family associated with various cellul
     0.0013   18.5   0.0      0.026   14.3   0.0    2.5  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0027   17.5   0.0      0.012   15.3   0.0    2.0  1  Sigma54_activat  Sigma-54 interaction domain
  ------ inclusion threshold ------
      0.048   13.0   0.3        1.3    8.4   0.1    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI


Domain annotation for each model (and alignments):
>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.5   0.0   6.6e-67   1.5e-63       1     131 []      47     177 ..      47     177 .. 1.00

  Alignments for each domain:
  == domain 1  score: 212.5 bits;  conditional E-value: 6.6e-67
       AAA_3   1 hvllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanllladeinrappktqsalleameerqvtvegethk 99 
                 hvlle++PGl+ktl+++++a+al+l+f+r+qftpdllP+d++G+ ++++++ +f+f++Gpvf+nllladeinr+ppktqsalleam+e+qv+veg t++
  KIR65161.1  47 HVLLEDLPGLGKTLTARSFAQALGLDFRRLQFTPDLLPADVTGSFLYDQRSGDFSFRAGPVFTNLLLADEINRTPPKTQSALLEAMQEKQVSVEGVTYR 145
                 9************************************************************************************************** PP

       AAA_3 100 lpepflvlatqnPieqeGtyplpeaqldrfll 131
                 l+epf vlat nPie+eGtyplpeaqldrfll
  KIR65161.1 146 LDEPFHVLATANPIEYEGTYPLPEAQLDRFLL 177
                 ******************************96 PP

>> AAA_lid_2  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   2.6   1.3e-22   2.9e-19       2      59 ..     241     297 ..     240     305 .. 0.94

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 1.3e-22
   AAA_lid_2   2 atrahlaielgvsgrRadlallraArAlAalegrdyVtpeDvkeaaplVLaHRlrrep 59 
                 atr+h+++ +g+s+r ++lall  ArA+A ++grdyV+peDvke+a ++LaHR++ +p
  KIR65161.1 241 ATREHPSVLVGASPR-GSLALLLLARARAVFAGRDYVVPEDVKEVAAPALAHRITLRP 297
                 89*************.**************************************9444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   4.4e-15   9.9e-12       1     138 []      47     175 ..      47     175 .. 0.92

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 4.4e-15
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--...........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik..ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllle 97 
                 +vlL   pG gK+  a+++a+al+  +   q+t d+ ++d++g+  ++  +g+ s++ +p+        +l+ DE++r +++++++Ll  + e++++  
  KIR65161.1  47 HVLLEDLPGLGKTLTARSFAQALGLDFRRLQFTPDLLPADVTGSFLYDqrSGDFSFRAGPVF-----TNLLLADEINRTPPKTQSALLEAMQEKQVS-V 139
                 5777778****************************************999************.....6899**************************.7 PP

                 -SSSEEE---......-EEEEEESS--..-TT-TTHHHHTT- CS
       AAA_5  98 eggelvkaknddllerfrviatanpld.rslnelspalrsRf 138
                 eg ++   ++      f+v+atanp +  +  +l +a ++Rf
  KIR65161.1 140 EGVTYRLDEP------FHVLATANPIEyEGTYPLPEAQLDRF 175
                 7888887888......***********777778888888887 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   4.5e-08    0.0001      96     175 ..      86     160 ..      45     177 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 4.5e-08
                 HSSSEEEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SS CS
         MCM  96 gLtaavvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpka 175
                 + t +   d+++g+f + aG + +    +++ De+++   +++sal+Eam ++++s+   G+++ L+    vla anp++
  KIR65161.1  86 DVTGSFLYDQRSGDFSFRAGPVFTN---LLLADEINRTPPKTQSALLEAMQEKQVSVE--GVTYRLDEPFHVLATANPIE 160
                 5677777888889999999988754...8999************************97..9*****************94 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.6e-07   0.00058       2     111 ..      49     158 ..      48     183 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.6e-07
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEET.TTCS.SS.....STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisg.sell.sk.....yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLltel 93 
                 ll   pG GKTl+a++ a+ lg +f +++  ++ll  +     +  +++ +++     +     +  l+ DEi +  ++            +++Ll+++
  KIR65161.1  49 LLEDLPGLGKTLTARSFAQALGLDFRRLQFtPDLLpADvtgsfLYDQRSGDFSFRAGPVF----TNLLLADEINRTPPKT-----------QSALLEAM 132
                 66667*******************999996267774443333333333333333333333....3789********9999...........******** PP

                 HHTTTS........SSTEEEEEEESS CS
         AAA  94 dgvkkk........eskvivigatnr 111
                 ++ + +        ++++ v++++n 
  KIR65161.1 133 QEKQVSvegvtyrlDEPFHVLATANP 158
                 **999999999999777999999997 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.2e-05     0.026      34     114 ..      46     138 ..      41     144 .. 0.71
   2 ?   -2.2   0.0       1.3     3e+03     104     141 ..     218     255 ..     205     266 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvklki.tsgPvlekagdlaalltnleekd...........vlfideihrlsraveevlysamedfrld 114
                  hvll   PGlGkt  a+  a+ lg +++    +P l  a    ++l + +++d           +l+ dei r  ++++  l  am++ ++ 
  KIR65161.1  46 GHVLLEDLPGLGKTLTARSFAQALGLDFRRlQFTPDLLPADVTGSFLYDQRSGDfsfragpvftnLLLADEINRTPPKTQSALLEAMQEKQVS 138
                 5*************************9975145677765544455666655554222222222225778999999999999999999887775 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.3
      RuvB_N 104 lysamedfrldivigkGpsarsikldlpkftlvgattr 141
                 +  a+e++ ++  ig+   a +   + ++  lvga+ r
  KIR65161.1 218 MQVALENVVVEDSIGRYIVALTAATREHPSVLVGASPR 255
                 55677777777777777777777777777788888766 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.5e-06     0.012      95     135 ..     110     150 ..      31     161 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.5e-06
                      SEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--E CS
  Sigma54_activat  95 GtlfLDeigelplelQekLlrvlqegevervGsskeikvdv 135
                        l+ Dei++ p+++Q+ Ll+++qe++v+  G +   +  +
       KIR65161.1 110 NLLLADEINRTPPKTQSALLEAMQEKQVSVEGVTYRLDEPF 150
                      46788**********************98877666555555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   0.00058       1.3       7      44 ..      30      67 ..      26      72 .. 0.67
   2 ?    2.3   0.0     0.043        96     109     158 ..     111     158 ..      99     166 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00058
  Mg_chelatase  7 GqeeakraleiaaaGgHnlllvGppGsGKtmlakrlps 44
                  G++ea + +   +  g ++ll   pG GKt+ a+ +++
    KIR65161.1 30 GKREALELVLAGILAGGHVLLEDLPGLGKTLTARSFAQ 67
                  554444443333322456899************98876 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.043
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNp 158
                   +L+ DE+     k+  +L e +++++v+++  +++++ p  f ++a++Np
    KIR65161.1 111 LLLADEINRTPPKTQSALLEAMQEKQVSVEGVTYRLDEP--FHVLATANP 158
                   6888*************************9988887766..777888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2383.63
//
Query:       KIR65162.1  [L=438]
Description: NADH dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-39  135.8   0.0    2.1e-39  135.5   0.0    1.1  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    8.8e-10   39.0   0.0    9.2e-05   22.9   0.1    2.9  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    1.4e-07   31.5   0.5      0.018   14.7   0.0    2.9  3  DAO             FAD dependent oxidoreductase
    2.2e-05   24.5   1.4     0.0024   17.9   0.0    3.2  4  NAD_binding_9   FAD-NAD(P)-binding
    0.00027   21.1   0.3     0.0011   19.1   0.0    2.1  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      0.005   16.0   0.2        2.7    7.0   0.0    3.6  4  GIDA            Glucose inhibited division protein A
     0.0052   17.2   0.0      0.011   16.2   0.0    1.7  1  NAD_binding_7   Putative NAD(P)-binding
  ------ inclusion threshold ------
       0.03   13.9   0.1      0.069   12.7   0.0    1.6  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
      0.062   12.6   0.1       0.88    8.8   0.0    2.2  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.077   11.7   0.0       0.54    8.9   0.0    2.1  2  HI0933_like     HI0933-like protein
      0.092   12.3   0.0       0.14   11.7   0.0    1.2  1  DUF1188         Protein of unknown function (DUF1188)


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.5   0.0   1.3e-42   2.1e-39       2     294 .]       5     334 ..       4     334 .. 0.89

  Alignments for each domain:
  == domain 1  score: 135.5 bits;  conditional E-value: 1.3e-42
                  SEEEE--SHHHHHHHHHHHH....HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH....HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEE CS
                  xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq....agakvtlvelegtclnggcllskallgvaedaeias....evvkklnqgielllgeevvkidpgkkkvklekkk 91 
                  +++v+G+G+ Gl aal+l++     +a+v++v + + +++ +++l++a++g  ++++ +     e         ++++g +v++i++++ kv   +  
   KIR65162.1   5 RILVVGAGHVGLYAALRLSKklssREAEVVVV-DPQPHMTYQPFLPEAAAGNISPRHSVVplrrE-----LRRCKVVAG-TVTRIEHDR-KVATVQPI 94 
                  899*****************88866*******.88888899999999999999999988855532.....246789999.9****9999.77777888 PP

                  CTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T.................SEEEEES-SHHHHHHHHHHHHHT-...... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxx...... RF
  Pyr_redox_2  92 egdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp.................krivvvGgGyiGvElAaalaklgk...... 166
                  +g +++i yd++v+A+Gs +r+l+ipG+ e+++ + +t+ +a +l+ + l+                   ++ vGgGy G+E  a++ +++       
   KIR65162.1  95 SGPTREIPYDHVVVAPGSVSRTLPIPGLHEHGIGF-KTIGEAIYLRNHVLDrldvaaatqdaqvrrsaLTFTFVGGGYAGIEALAEMEDMARdalryy 191
                  8***************************9**9999.***************99999999998887666666*******************99777777 PP

                  ........EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETT CS
                  ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 167 ........evtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklglelderg 256
                          + +lvea +r+l+++d++++a+  ++l k++ +++l t+ +    +g    v+l+dg+++  d++v+ +Gv+ps+ l  ++   + der+
   KIR65162.1 192 pelepedmRWVLVEATQRVLPEVDRDMGAYTVQQLLKRNMDIRLDTRLESCV-DGV---VKLSDGDSFRSDTIVWTAGVKPSPML--DATDFPRDERR 283
                  77777777677*************************************6666.777...9**********************977..9********** PP

                  EEE--TTSBE....S.STTEEE-GGGC........TECCSS--HHHHHHHH CS
                  xxxxxxxxxx....x.xxxxxxxxxxx........xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 257 givvdeflrt....n.vpgiyaiGDva........ggkggpelaqaAvqqG 294
                  ++ + ++l++      ++g + +GD+a         g     +aq+Av+q+
   KIR65162.1 284 RVTCLPTLQVvdgdRvIEGAWSAGDCAavpdltkePGNFCSPSAQHAVRQA 334
                  ********9877774499*********999999887778888999999987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   8.3e-05      0.13       1      45 [.       5      55 ..       5      61 .. 0.80
   2 !   22.9   0.1   5.7e-08   9.2e-05       3      67 ..     165     243 ..     163     252 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.3e-05
                EEEEECSSHHHHHHHHHH....HHTTSEEEEEESSSSSS..TTSSHHHHHH CS
   Pyr_redox  1 kvvvvGgGyiglElAgal....aelgkkVtvversdkll..rllDeeaski 45
                +++vvG+G +gl +A  l    +   ++V vv+ ++++   + l+e+a+ +
  KIR65162.1  5 RILVVGAGHVGLYAALRLskklSSREAEVVVVDPQPHMTyqPFLPEAAAGN 55
                79*************999544344458**********99988888877655 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 5.7e-08
                 EEECSSHHHHHHHHHHHHTT..............SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEE CS
   Pyr_redox   3 vvvGgGyiglElAgalaelg..............kkVtvversdkllrllDeeaskilqeklekngievllntkveeie 67 
                 ++vGgGy g+E+ +++ +++               +  +ve+  ++l+  D+++++++ ++l k++++++l+t++e+ +
  KIR65162.1 165 TFVGGGYAGIEALAEMEDMArdalryypelepedMRWVLVEATQRVLPEVDRDMGAYTVQQLLKRNMDIRLDTRLESCV 243
                 68**************887777778888888887899**************************************9987 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.1e-05     0.018       2      29 ..       6      39 ..       5      44 .. 0.85
   2 !   13.0   0.3   3.5e-05     0.057     140     298 ..      53     213 ..      47     222 .. 0.54
   3 ?   -0.4   0.0       0.4   6.6e+02     154     206 ..     224     271 ..     215     294 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-05
                EEEECTSHHHHHHHHHHHHT.T.....EEEEESS CS
         DAO  2 vviiGGGiiGlstAyeLarr.g.....Vtllekg 29
                ++++G+G +Gl +A+ L+++       V++++ +
  KIR65162.1  6 ILVVGAGHVGLYAALRLSKKlSsreaeVVVVDPQ 39
                99***************9876246799****987 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 3.5e-05
                 EEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE...EECTEEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCTHST CS
         DAO 140 tgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve...rttpgendaadavVnaaGawsdllgllkeldlpispvrgqvlvlkplseklv 235
                 +g++ p++ +  l+r+++   ++++ g +vt++e+ d kv++v+     t+++   +d+vV+a G  s+ l        pi ++  + + +k + e+  
  KIR65162.1  53 AGNISPRHSVVPLRRELR--RCKVVAG-TVTRIEH-DRKVATVQpisGPTREI--PYDHVVVAPGSVSRTL--------PIPGLHEHGIGFKTIGEAIY 137
                 588999999999999986..68*****.*****65.7899***8864322244..6899******887633........44445555555544444221 PP

                 GSGCSEEEEE...EEETTTTEEEEEETTSEEEEEESSE........EETTCSS....TSCSHHHHHH.HHHHHHHHSGG CS
         DAO 236 spaailpvpe...tdddgrgvyvtprkdgrvlvGgtad........eesgddd....pevdeedide.llealrklfPq 298
                  +    +v++         +  v++++   + vGg +         e+ + d     pe ++ed ++ l ea ++++P+
  KIR65162.1 138 LR---NHVLDrldVAAATQDAQVRRSALTFTFVGGGYAgiealaemEDMARDAlryyPELEPEDMRWvLVEATQRVLPE 213
                 11...11111111111122222222222223334433233333554333333344455666666666555555555565 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.4
                 HHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEE.EEEEEEEE--GGGHH.H CS
         DAO 154 raaealGveilegtevtgleeedgkvwgverttp.gen.daadavVnaaGawsd.l 206
                 +++ ++  +i++ t+ ++       v gv  + + g   ++ d++V +aG+  +  
  KIR65162.1 224 QQLLKRNMDIRLDTRLESC------VDGVV-KLSdGDSfRS-DTIVWTAGVKPSpM 271
                 5677888999999999997......66663.3333766456.99******875433 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.5e-06    0.0024       2      42 ..       8      47 ..       7      57 .. 0.87
   2 ?    3.9   0.1      0.03        48     116     154 ..      71     111 ..      59     113 .. 0.83
   3 ?   -2.3   0.0       2.4   3.9e+03       2      15 ..     166     179 ..     165     187 .. 0.83
   4 ?   -1.5   0.0       1.4   2.2e+03     131     154 ..     243     265 ..     220     267 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.5e-06
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsepgagrvw 42
                   +vGaG  Gl+++ rL ++  ++++ e+ ++dp++++  +++
     KIR65162.1  8 VVGAGHVGLYAALRLSKKL-SSREAEVVVVDPQPHMTYQPF 47
                   8*****************8.9***********998755555 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.03
  NAD_binding_9 116 tvevhraevvdleeradgqavlladg..aslaadaVvLAlG 154
                    + +v+ ++v+++e +++ ++v   +g  +++ +d+Vv+A G
     KIR65162.1  71 RCKVVAGTVTRIEHDRKVATVQPISGptREIPYDHVVVAPG 111
                    689999*******999999988877755779********99 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.4
  NAD_binding_9   2 ivGaGprGlavler 15 
                     vG+G +G+ +l++
     KIR65162.1 166 FVGGGYAGIEALAE 179
                    69******998876 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.4
  NAD_binding_9 131 adgqavlladgaslaadaVvLAlG 154
                     dg  v l+dg+s++ d +v + G
     KIR65162.1 243 VDG-VVKLSDGDSFRSDTIVWTAG 265
                    455.48899999999999999988 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   6.8e-07    0.0011       1      30 [.       8      41 ..       8      44 .. 0.88
   2 ?   -1.9   0.1       2.5   4.1e+03       2       9 ..     167     174 ..     167     185 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 6.8e-07
                   EE--SHHHHHHHHHHHCC....TEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka....gfdvlllekrdr 30
                   +vGaG  Gl+aA +L+k+     ++v++++ +++
     KIR65162.1  8 VVGAGHVGLYAALRLSKKlssrEAEVVVVDPQPH 41
                   8***************955555889*****9998 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.5
                    E--SHHHH CS
  NAD_binding_8   2 vGaGlsGl 9  
                    vG+G +G 
     KIR65162.1 167 VGGGYAGI 174
                    9*****97 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0017       2.7       2      20 ..       6      24 ..       5      39 .. 0.91
   2 ?   -1.3   0.0      0.53   8.6e+02     112     160 ..      73     122 ..      66     133 .. 0.75
   3 ?    2.4   0.1     0.041        67       4      18 ..     166     180 ..     163     188 .. 0.81
   4 ?    1.5   0.0     0.076   1.2e+02      91     150 ..     213     266 ..     205     287 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0017
                EEEE-SSHHHHHHHHHHHH CS
        GIDA  2 viViGgGhAGceAAlaaar 20
                + V+G+Gh G+ AAl +++
  KIR65162.1  6 ILVVGAGHVGLYAALRLSK 24
                78*************9987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.53
                 EEEES-EEEEEECTTEEEEEEETTS..-EEEECEEEE--TT-BT-EEEETT CS
        GIDA 112 eiieeeveeliveekkvkgvvtedg..etikakavviatGtflkgkihige 160
                 +++ ++v++++  ++kv+ v   +g  ++i  ++vv+a G+ ++  ++ g 
  KIR65162.1  73 KVVAGTVTRIEH-DRKVATVQPISGptREIPYDHVVVAPGSVSRTLPIPGL 122
                 789999999955.88888887766522667788******997776666655 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.041
                 EE-SSHHHHHHHHHH CS
        GIDA   4 ViGgGhAGceAAlaa 18 
                  +GgG AG+eA +++
  KIR65162.1 166 FVGGGYAGIEALAEM 180
                 59*********7766 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.076
                 EE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEE.EEETTS-EEEECEEEE--TT CS
        GIDA  91 qvdrelyskevteklenepnleiieeeveeliveekkvkg.vvtedgetikakavviatGt 150
                  vdr+  + +v++ l+++ ++ + ++  + +        g v+++dg  ++++++v ++G 
  KIR65162.1 213 EVDRDMGAYTVQQLLKRNMDIRLDTRLESCV-------DGvVKLSDGDSFRSDTIVWTAGV 266
                 6888888888888888877777665544444.......353889***************96 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.6e-06     0.011       6      45 ..       2      45 ..       1     161 [. 0.71

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.6e-06
  NAD_binding_7  6 kgkkvlvvGgGevAa....rkvrklleagakvtvvapevkeele 45
                   + k++lvvG+G v++    r  +kl + +a+v+vv+p+ +   +
     KIR65162.1  2 NPKRILVVGAGHVGLyaalRLSKKLSSREAEVVVVDPQPHMTYQ 45
                   5699*********8733324445666678********9633333 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.2e-05     0.069       2      32 ..       5      39 ..       4      43 .. 0.83
   2 ?   -3.9   0.1       5.4   8.9e+03       4      15 ..     165     176 ..     164     183 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.2e-05
                    EEEEE--STTHHHHHHHHHHCT....SEEEEE-S- CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeig....hevigvDid 32
                    +i v+G+G+vGl  a+ l+++      ev++vD +
      KIR65162.1  5 RILVVGAGHVGLYAALRLSKKLssreAEVVVVDPQ 39
                    899***********99988765555599****965 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 5.4
                     EEE--STTHHHH CS
  UDPG_MGDP_dh_N   4 sviGlGYvGlvt 15 
                     +++G GY G+  
      KIR65162.1 165 TFVGGGYAGIEA 176
                     579****99865 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00054      0.88      28      63 ..       3      42 ..       1      80 [. 0.77
   2 ?    1.4   0.0       0.1   1.6e+02      30      50 ..     163     183 ..     135     188 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00054
                 --EEEEESTSHHHHHHH.HHHHHT...T-EEEEEESSHHH CS
  AlaDh_PNT_C 28 pakvlviGgGvaGlqAi.atakgl...gakVtvlDvrpar 63
                 p ++lv+G+G +Gl A+ + +k+l   +a+V+v+D +p+ 
   KIR65162.1  3 PKRILVVGAGHVGLYAAlRLSKKLssrEAEVVVVDPQPHM 42
                 789**********977636777773335889999988765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.1
                  EEEEESTSHHHHHHHHHHHHT CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakgl 50 
                  + + +GgG aG++A+a    +
   KIR65162.1 163 TFTFVGGGYAGIEALAEMEDM 183
                  55679*********9876655 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00033      0.54       2      33 ..       5      40 ..       4      44 .. 0.82
   2 ?   -0.2   0.0      0.19   3.1e+02     116     175 ..     223     277 ..     202     280 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00033
                 SEEEE--SHHHHHHHHHH....HHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisa....akrgkrVlllekak 33
                 +++v+G+G  Gl+aA+++    ++r+++V++++ ++
   KIR65162.1  5 RILVVGAGHVGLYAALRLskklSSREAEVVVVDPQP 40
                 689************998655577899999999765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.19
                  HHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-GGGT--SH CS
  HI0933_like 116 lkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSiPklGstgk 175
                  +++l ++++++rl+t+++s     dg   vk+++++++++d++v + G +  P l +t++
   KIR65162.1 223 VQQLLKRNMDIRLDTRLESC---VDG--VVKLSDGDSFRSDTIVWTAGVKPSPMLDATDF 277
                  67778888999999999998...566..57777899************999999988875 PP

>> DUF1188  Protein of unknown function (DUF1188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.7e-05      0.14      42      78 ..       2      43 ..       1      52 [. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.7e-05
                ..EEEEEES-CCCHHHHHHHHCCC.....EEEEEEESSGGGG CS
     DUF1188 42 eeknvlviGaYltGaaiakkLskk.....eevtlvDiephlk 78
                ++k++lv+Ga  +G + a +Lskk     +ev++vD +ph+ 
  KIR65162.1  2 NPKRILVVGAGHVGLYAALRLSKKlssreAEVVVVDPQPHMT 43
                6899**********99776665533211579*********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 2796.56
//
Query:       KIR65163.1  [L=607]
Description: hypothetical protein TK50_06620 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.041   14.1   0.1        2.8    8.2   0.1    2.5  2  SARS_X4   SARS coronavirus X4 like


Domain annotation for each model (and alignments):
>> SARS_X4  SARS coronavirus X4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0    0.0068   1.2e+02       4      22 ..     476     494 ..     474     513 .. 0.85
   2 ?    8.2   0.1   0.00016       2.8      49      64 ..     572     587 ..     568     593 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.0068
                 EEEEEETTSEEEEE-SSTT CS
     SARS_X4   4 hyqecvrgttvllkepcps 22 
                 h++ecvr   vl+  p p+
  KIR65163.1 476 HWRECVRPGGVLVPVPLPT 494
                 99**********9988886 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00016
                 EEE-TTS-EEEEEEEE CS
     SARS_X4  49 afacadgtrhtyqlra 64 
                 +fa+adgtrh+ +lra
  KIR65163.1 572 CFAVADGTRHADDLRA 587
                 69*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4320.21
//
Query:       KIR65164.1  [L=271]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-84  283.1  13.9    1.7e-84  283.0  13.9    1.0  1  BaxI_1     Bax inhibitor 1 like
    2.6e-08   34.0  26.6    3.2e-08   33.7  26.6    1.0  1  Bax1-I     Inhibitor of apoptosis-promoting Bax1
  ------ inclusion threshold ------
      0.018   15.2   6.1      0.018   15.2   6.1    2.2  2  YtpI       YtpI-like protein
        8.7    6.3  22.8       0.83    9.7  18.4    1.5  2  HisKA_7TM  N-terminal 7TM region of histidine kinase


Domain annotation for each model (and alignments):
>> BaxI_1  Bax inhibitor 1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.0  13.9   3.9e-88   1.7e-84       1     231 [.       5     268 ..       5     269 .. 0.92

  Alignments for each domain:
  == domain 1  score: 283.0 bits;  conditional E-value: 3.9e-88
      BaxI_1   1 npvfsrseekkqkeeaaaea.............................mtvddvvvktaillgvlvvtavvtwflvlaaaaa.lllvgalvglvlalv 69 
                 npv++r  +++++e+a++ a                             m++ddvvvkt++llg+l ++a+++w+lv++a    +++++a+vglvl+l+
  KIR65164.1   5 NPVLARLGQAAERERATGYAptgpygqpgypqqypgatgypaapptvtpMSIDDVVVKTVVLLGILGASAAAAWVLVPDALLGvAWIGAAVVGLVLGLI 103
                 5666555544444443333367777888888888888889999999999****************************987777999999********** PP

      BaxI_1  70 asfkkkvspalvllYAvleGlflGgislvfea..pgivvqAvlgTlgvfavmlvlYktgairvtpkftkivvaaligilllylvnlvlslfgvgeglrd 166
                 +sf+++++palv++YAv+eG+f+G++s++f++  +giv+qAv++ +gvf++m++lYk+++ir+tpkf + +vaa++g+++++l+nlvl+lfgv++glrd
  KIR65164.1 104 ISFSRMANPALVIAYAVVEGVFVGMVSKAFNSlyDGIVLQAVVASFGVFFLMAMLYKARVIRATPKFVRGMVAAMVGLFAVMLINLVLALFGVNTGLRD 202
                 ********************************************************************************************999**** PP

      BaxI_1 167 gg.lgilfslvvivlAalsLllDFdqieqgvragaPkkyeWyaAfGLlvTLVWLYleiLrLLsylr 231
                 g+ l+i+fslv+iv+A+ls++l F ++e+gvr+g+P++y+W+aAfG+lv+LVWLY+eiLrLLsy++
  KIR65164.1 203 GSpLAIGFSLVCIVVASLSFVLSFAEVEEGVRMGLPQRYSWTAAFGILVSLVWLYIEILRLLSYFQ 268
                 *88**************************************************************8 PP

>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7  26.6   7.2e-12   3.2e-08      11     207 .]      65     264 ..      59     264 .. 0.72

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 7.2e-12
      Bax1-I  11 lalgllltalvaavvlsspaqlflslhivlflvvilaplalvflslsaarlkkkssalalallllftlleGlslspillvyt...gaiilqaflltaai 106
                 + lg+l + ++aa+vl ++  + l    v ++++ +++l+l + ++s++r+   ++    al+++++++eG++++++  +++    +i+lqa+++ +++
  KIR65164.1  65 VLLGILGASAAAAWVLVPD--A-LLG--VAWIGAAVVGLVLGL-IISFSRMA--NP----ALVIAYAVVEGVFVGMVSKAFNslyDGIVLQAVVASFGV 151
                 4567777766666665555..2.222..234556666666665.44564553..33....6*****************9999999************** PP

      Bax1-I 107 fgglslyaltt.krdlsglggflfagligliiaslvnlFlp..........ssalelaisylgvllfsglilyDtqki...ierageygeedailaals 191
                 f+ ++++      r   ++   ++a+++gl++++l+nl l+          +s l + +s++ +++ s+  +  +  +   +++    + + ++ aa+ 
  KIR65164.1 152 FFLMAMLYKARvIRATPKFVRGMVAAMVGLFAVMLINLVLAlfgvntglrdGSPLAIGFSLVCIVVASLSFVLSFAEVeegVRMGLP-QRY-SWTAAFG 248
                 *99987733332555557777777999999999999988655557777768666777777777777777766666666555776544.455.8****** PP

      Bax1-I 192 LyldfinlFlslLril 207
                 + +++++l++ +Lr+l
  KIR65164.1 249 ILVSLVWLYIEILRLL 264
                 **************96 PP

>> YtpI  YtpI-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3         1   4.6e+03      34      37 ..     107     110 ..      91     132 .. 0.55
   2 ?   15.2   6.1     4e-06     0.018       6      77 ..     151     226 ..     143     231 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1
        YtpI  34 asia 37 
                 +++a
  KIR65164.1 107 SRMA 110
                 3333 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 4e-06
        YtpI   6 lslvlyvyykvkafrtkdplekkllsak....asialGlflilfginqllllestvalvvgavflvlGlanlfaGi 77 
                 + ++++++yk++ +r++ +  +++++a+    a +++ l l+lfg+n  l  +s +a+  ++v++v++  ++++ +
  KIR65164.1 151 VFFLMAMLYKARVIRATPKFVRGMVAAMvglfAVMLINLVLALFGVNTGLRDGSPLAIGFSLVCIVVASLSFVLSF 226
                 456677899******************9555567889999*****************************9999877 PP

>> HisKA_7TM  N-terminal 7TM region of histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  18.4   0.00018      0.83      59     213 ..      87     222 ..      59     227 .. 0.65
   2 ?   -3.2   0.1       1.5   6.9e+03     198     207 ..     248     257 ..     236     265 .. 0.45

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00018
   HisKA_7TM  59 klqylgivfipvlwllfaleytgkrrwltrrrlallllvpvltlilvltnplhhlfyvsagsfvvlefehGplfwvhlaysyllliagvvlliralirs 157
                  + ++g+++ + l l +++ +++     ++ +++++++v  +++ + ++  ++ l               G+++   ++ s+ ++++ ++l+   +ir+
  KIR65164.1  87 GVAWIGAAV-VGLVLGLIISFSRM---ANPALVIAYAVVEGVFVGM-VSKAFNSL-------------YDGIVLQ-AVVASFGVFFLMAMLYKARVIRA 166
                 344554443.33344455555542...3333333344433222221.23333333.............4699995.678888888777888888999** PP

   HisKA_7TM 158 sglyrrqalllligllvPwlanllyl.lglsplpgidltplafaltglllaiaifry 213
                 ++++ r +++ ++gl++ +l+nl+   +g+++    d  pla+ ++ +++ +a +++
  KIR65164.1 167 TPKFVRGMVAAMVGLFAVMLINLVLAlFGVNTG-LRDGSPLAIGFSLVCIVVASLSF 222
                 **********************99996777776.88999999999999988887765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.5
   HisKA_7TM 198 afaltgllla 207
                 +++++ + l+
  KIR65164.1 248 GILVSLVWLY 257
                 2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       858  (0.0478554); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2092.39
//
Query:       KIR65165.1  [L=106]
Description: hypothetical protein TK50_06635 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 895.89
//
Query:       KIR65166.1  [L=420]
Description: acetyl-CoA acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-61  208.6   0.0    4.5e-61  206.5   0.0    2.0  1  Thiolase_N     Thiolase, N-terminal domain
    8.4e-47  157.8   0.4    1.6e-46  157.0   0.4    1.5  1  Thiolase_C     Thiolase, C-terminal domain
    1.9e-05   24.4   1.9    0.00023   20.8   0.3    2.5  2  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
  ------ inclusion threshold ------
      0.036   13.9   0.4        7.9    6.4   0.1    2.6  2  ACP_syn_III    3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.5   0.0     1e-64   4.5e-61       2     259 ..      10     288 ..       9     289 .. 0.94

  Alignments for each domain:
  == domain 1  score: 206.5 bits;  conditional E-value: 1e-64
                 EEEEEEEE--EE.TTSTTTTS-HHHHHHHHHHHHHHHHT.S-GGGCCEEEEEHSSCT.TSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHH CS
  Thiolase_N   2 vivsaartpigk.fggslkdlsaeeLlaealkallekag.vdpeevdevivGnvlqa.gegqniarqaalkagipeevpavtvnkvcsSglkavalaaq 97 
                 viv++ar+pig+  +gsl+d++ ++L+a++++a+l+k++ +dp e+d++++G+ l + ++g n+ar +a  +g+ +  p  t+++ c+S+l++  +a+ 
  KIR65166.1  10 VIVATARSPIGRaHKGSLRDVRPDDLAATIVRAALDKVPqLDPTEIDDLYLGCGLPGgEQGFNMARVVATLLGL-DGLPGATLTRYCASSLQTTRMAMH 107
                 9***********9*******************************************9899**************.************************ PP

                 HHHTTSHSEEEEEEEEESTTS-EEETCTTT.........................TGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HH CS
  Thiolase_N  98 siaageadvvvagGvEsmsnaptaestdvr.........................sglklgdekakdllipdgladafneehmGltaenlakkykisRe 171
                 +i+age dv+v  GvE+ s+  + +s d+                           +++ g+e   d  ++  l d++    mG taenla++y++sR 
  KIR65166.1 108 AIRAGEGDVFVSAGVETVSRYARGNS-DALppeaqalvgggwenprfaaarersaRRAEGGAEVWADPRSTGELPDIY--LAMGQTAENLAQAYDVSRA 203
                 ********************999998.666699***************999987766666666666766666677776..68***************** PP

                 HHHHHHHHHHHHHHHHHHTTTTTTTBE-EEEEESSSEEEE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 172 eqdefAvkshqkaaaaqkagkFkdeivPvkvkgkkgkktvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmse 259
                 + d+f v+s++ a++a+++g +++ei Pv++++     +vd+d+++r++vt+e +a lkp+F+ +G +tAgn+++++DGaaav++ms+
  KIR65166.1 204 DMDAFGVRSQNLAEKAIADGFWAREITPVTTPDGT---VVDTDDGPRPGVTLEGVAGLKPVFRPDGRITAGNCCPLNDGAAAVVIMSA 288
                 *******************************9966...************************************************97 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.0   0.4   3.5e-50   1.6e-46       1     123 []     296     418 ..     296     418 .. 0.99

  Alignments for each domain:
  == domain 1  score: 157.0 bits;  conditional E-value: 3.5e-50
                 ---SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHH CS
  Thiolase_C   1 lkplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselkk 99 
                 l+pla+i+s  +++  pei+glgP+ a+k++l +ag+t+ d+dl+EinEAFaaq++ + ++l++d+ek+Nv GGaia+GHP+G++GaRi+ tll++l+ 
  KIR65166.1 296 LTPLARIVSTGVTALSPEIMGLGPVEASKQALRRAGMTIGDVDLVEINEAFAAQVIPSYRQLGIDEEKLNVMGGAIAVGHPFGMTGARITGTLLNALEW 394
                 589************************************************************************************************ PP

                 CTTSEEEEEEEETTTEEEEEEEEE CS
  Thiolase_C 100 eggklgvaalCigggqgvalviek 123
                 +++ +g+ ++C gggqg+a+v+e+
  KIR65166.1 395 HDKSIGLETMCVGGGQGMAMVLER 418
                 *********************985 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.3   5.1e-08   0.00023     155     205 ..      74     125 ..      65     133 .. 0.87
   2 ?    1.8   0.0     0.034   1.5e+02       3      37 ..     301     338 ..     300     365 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.1e-08
                    HHHHHHHHT--SSEEEEES.GGGHHHHHHHHHHHHHHTTS-SEEEEEEEE-- CS
  ketoacyl-synt 155 agrisyalglrGpsvtvdt.ACsSslvavhaavqslrsgeadvalaGGvell 205
                    a  ++  lgl+G   ++ t  C+Ssl    +a++++r+ge dv +  Gve+ 
     KIR65166.1  74 ARVVATLLGLDGLPGATLTrYCASSLQTTRMAMHAIRAGEGDVFVSAGVETV 125
                    6678999*****776665537****************************975 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.034
                    -EEEEEEEEEBTTBSS...HHHHHHHHHTT---EEES- CS
  ketoacyl-synt   3 pvaivGmgarfPggnd...veefwelLlegrdaiselp 37 
                    +++ +G+ a+ P+  +   ve+  ++L++ +  i++++
     KIR65166.1 301 RIVSTGVTALSPEIMGlgpVEASKQALRRAGMTIGDVD 338
                    79999999999999999999999999999999999887 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0018       7.9       4      40 ..      92     128 ..      90     135 .. 0.92
   2 ?    4.7   0.0     0.006        27      48      64 ..     272     288 ..     267     299 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0018
                  E-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGC CS
  ACP_syn_III   4 naaCsgfvyalsvAdaliesgaakrvLvigaetlski 40 
                  +  C++ ++   +A ++i++g+    +  g et+s++
   KIR65166.1  92 TRYCASSLQTTRMAMHAIRAGEGDVFVSAGVETVSRY 128
                  567********************************97 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.006
                  HHTTB-EEEEEEEEEEE CS
  ACP_syn_III  48 tavlfGDGAgAvvleas 64 
                  ++  + DGA+Avv+   
   KIR65166.1 272 NCCPLNDGAAAVVIMSA 288
                  566789*******9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3218.51
//
Query:       KIR65167.1  [L=365]
Description: GDSL family lipase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-22   78.2   0.1    3.1e-21   76.6   0.0    1.8  2  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
    2.1e-09   37.7   0.0      3e-09   37.2   0.0    1.2  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   3.4e-25   3.1e-21       1     178 [.      95     271 ..      95     272 .. 0.81
   2 ?   -2.3   0.0      0.56     5e+03     127     161 ..     299     335 ..     282     341 .. 0.67

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 3.4e-25
                    EEESHHHHTCTTBCCHCHHCCCCCCCHHHTT-EEEEE..EEHCCH-H..HHHHHHHHCTGGG-TSEEEEE--CCCCCTT--HHHHHHH..HHHHHH CS
  Lipase_GDSL_2   1 alGDSiTaGygadgggrsypaylarllaarlgldvvnn.lgvsGattallrllerlrdllrlkpdlvtiliGtNDlgrgvpaaaaaandnleelid 95 
                    +lGDS +aGyg+ +  ++  ++la  l++rl+++v+   ++v Ga +    l ++++++l+++pd+ +iliG+ND+ +++p+a a+++  l   ++
     KIR65167.1  95 VLGDSSAAGYGVHRRRETPGSLLATGLSRRLHRPVRLHrFAVVGAIS--SGLKPQVEAALEVSPDVAVILIGGNDVTNRTPPALAVRY--LVDAVR 186
                    69***********999999999*********99999999******99..9***********************************999..999999 PP

                    HHCCC...GEEECEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHHCT-EEE-H.......HHHHHHCC.CCCGGBBTTS.SSB-HHHHH CS
  Lipase_GDSL_2  96 alraaapgarilvlgplpptpeaaadarelnaviaaynealrevaaeegvpfvDl.......hdaladsg.erladlladdglHPnaaGyr 178
                    alr    g+ ++v ++ p  +  ++ ++     +  ++++ r++aa++ v++v +        d+l ++  +++++++a d++HP+a+Gy+
     KIR65167.1 187 ALRGV--GCEVVVGTC-PDLGAIQPIQP---PLRWLARRWSRQLAAAQTVAVVEAggwtvslGDLLGPRFvAEPTRMFAWDRFHPSAEGYA 271
                    99999..999993333.33333333333...257777777777777777777777777777766666666555555566666********8 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.56
                    HHHHHHHHHHHHHHHHCT-EEE-H..HHHHHHCCCCC CS
  Lipase_GDSL_2 127 aviaaynealrevaaeegvpfvDl..hdaladsgerl 161
                    + ++ + ea++e+a++ g ++  +  ++  +++g+r+
     KIR65167.1 299 EGVRSLPEAAQEAARHAGTEVSATqvRGRDRGPGGRW 335
                    5566777888888888777776665555555555555 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   3.3e-13     3e-09       2     199 ..      94     276 ..      93     277 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 3.3e-13
                  EEEESHHHHTT...........THHHHHHHCCCCEECCCTTC.GCEEEEEEECTTHHHHHHHCCHECTTTECHHHHHCTTSEEEEE--CTCC-EECSS CS
                  xxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL   2 vafGDSltdGd...........gaatlntiqlktpknlnefdlaldrianignkgasdnelqqllnkyplkseqlkalhpdlviislGtNDsnlgkks 88 
                  v++GDS  +G+             at+ + +l++p  l        r a++g+ + +++++++             +  pd+ +i +G+ND+      
   KIR65167.1  94 VVLGDSSAAGYgvhrrretpgsLLATGLSRRLHRPVRL-------HRFAVVGAISSGLKPQVEAA----------LEVSPDVAVILIGGNDV------ 168
                  89*******99999999955555555555555555544.......45677777777777777777..........3458*************...... PP

                  CTTTCEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCH..CTCCCCHCCHHHHHHHHHHHHHHHHHHHHHCTEEEECHHHHHHHTHCCGCHCHT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  89 tdaakkeaeeyiknlreaikelkeegapkaivvlvsppglgp..qeekdakklgekgnefvgeynqrlndlaekdgfavvDlydelqglsgieqlkaD 184
                    ++ ++++ +++ l +a++ l+     ++ vv+ + p+lg     +   + l +++++ ++   ++    a++ ++ + Dl       + +   ++D
   KIR65167.1 169 --TNRTPPALAVRYLVDAVRALRGV---GCEVVVGTCPDLGAiqPIQPPLRWLARRWSRQLAAAQTVAVVEAGGWTVSLGDLLGPRFVAEPTRMFAWD 261
                  ..*********************55...5*************6544445556666666666666666666666************************* PP

                  SSSB-HHHHHHHHHH CS
                  xxxxxxxxxxxxxxx RF
  Lipase_GDSL 185 glHpsekgyeklael 199
                   +Hps +gy+ +a +
   KIR65167.1 262 RFHPSAEGYAVAAAA 276
                  **********99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2802.89
//
Query:       KIR65168.1  [L=456]
Description: cystathionine beta-synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-71  238.7   0.2    2.1e-70  237.5   0.1    1.6  2  PALP      Pyridoxal-phosphate dependent enzyme
    1.6e-14   54.1   0.2    2.1e-07   31.3   0.1    3.0  2  CBS       CBS domain


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.5   0.1   2.3e-74   2.1e-70       4     294 .]      10     296 ..       7     296 .. 0.94
   2 ?   -1.8   0.0      0.19   1.7e+03      71     107 ..     329     366 ..     325     401 .. 0.74

  Alignments for each domain:
  == domain 1  score: 237.5 bits;  conditional E-value: 2.3e-74
                 CSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHH CS
        PALP   4 gigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrl 99 
                  ig+TPlvrl+++++ + + +++K E+lnp+gS+KdR a  ++++++ +    ++ t+ve +sGN+g++lA++a+l G++++ v+p+++s++k++ lr+
  KIR65168.1  10 MIGNTPLVRLRNVTEGIRATVLAKVEYLNPGGSVKDRIALRMVEDAEAAgilGPGGTIVEPTSGNTGVGLALVAQLKGYRCVFVCPDKVSQDKQDVLRA 108
                 58*******************************************88888************************************************* PP

                 TT-EEEEE.....CCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHH.HSTT-EEEEEE CS
        PALP 100 lGaevvev.....ggdydeavaaaaelaaegegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglke.rrpdvrvigve 191
                 +Gaevv++     ++d+ +  ++  +la+e++ga   +q++np++    y+t+g+E+++q++g+++++v++vG+Gg+i+Gi+++lke +++ v+++g++
  KIR65168.1 109 YGAEVVVCptavaPEDPRSYYNVSDRLAREIPGAWKPDQYSNPANPRShYETTGPELWKQTDGQLTHFVAGVGTGGTISGIGRYLKEaSDGRVKIVGAD 207
                 ********88888778888888888**************************************************************77777******* PP

                 ECTTCGGTTCCS..S.SS..B.SSS.CCSTCS.CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTCEEEE CS
        PALP 192 pegsdalarslragrrvtvpvsdtiadglavg.spselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkegdrvv 289
                 pegs   +++            + +++g++ +  p++++ +++dr    iv+vsd++ +e+ r+lar+eg++v+ s+++a+ a+ l+ a++ +++d++v
  KIR65168.1 208 PEGSVYSGGTG----------RPYLVEGVGEDfWPTTYDRDIADR----IVEVSDKASFEMTRRLAREEGLLVGGSCGMAVVAA-LEVARDAGPDDVIV 291
                 **777666666..........69*********9999999999965....555********************************.**********9*** PP

                 EEE-B CS
        PALP 290 viltg 294
                 v+l++
  KIR65168.1 292 VLLPD 296
                 99975 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.19
                 HHHHHHHT-.EEEEEEETTS-HHHHHHHHHTT-EEEEE CS
        PALP  71 AaaaallGl.kvtivvpadaspekvallrllGaevvev 107
                 A+a++  Gl +++ v p  +  + ++ +r++G     v
  KIR65168.1 329 ALAGKPGGLpELVHVHPTETVRDAIDYMREYGVSQLPV 366
                 77888888866666677777799999999999754444 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.1   2.4e-11   2.1e-07       8      55 ..     339     391 ..     336     393 .. 0.90
   2 !   19.6   0.0   1.1e-07   0.00096       8      55 ..     409     453 ..     402     455 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 2.4e-11
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEE.....ETTTBEEEEEEHHHHHHHH CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVV.....dedgklvGivtlrDllral 55 
                 ++v v+p++t+++a++ mre+gvs+lPV+        g++ G v ++Dll+al
  KIR65168.1 339 ELVHVHPTETVRDAIDYMREYGVSQLPVLkaeppVVTGEVAGSVAEKDLLDAL 391
                 789**************************8888733579***********998 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 1.1e-07
                 SCEEEETTSBHHHHHHHHHHHTSSEEEE.EETTTBEEEEEEHHHHHHHH CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPV.VdedgklvGivtlrDllral 55 
                 +++++   ++++ea+ l+++    +l V V  dgk+ G++t+ Dll  l
  KIR65168.1 409 PLPMIGGGQPVSEAVALLEK-SDAAL-VlV--DGKPKGVLTRQDLLAHL 453
                 566777889*********54.32366.857..8*************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3448.73
//
Query:       KIR65169.1  [L=90]
Description: hypothetical protein TK50_06665 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.9   0.0       0.22   11.6   0.0    1.1  1  DUF4531   Domain of unknown function (DUF4531)


Domain annotation for each model (and alignments):
>> DUF4531  Domain of unknown function (DUF4531)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.2e-05      0.22      74     109 ..      52      87 ..      39      89 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.2e-05
     DUF4531  74 gcfqsrerslpsaytqrlretafydpiipaqykaps 109
                 g  ++++r+lp+    +lr   + d ++paq ++ s
  KIR65169.1  52 GVEERQRRGLPPDPGMELRHLGWLDMVLPAQGEQRS 87 
                 46678899***********************87755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 776.73
//
Query:       KIR65170.1  [L=85]
Description: hypothetical protein TK50_06670 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 731.10
//
Query:       KIR65171.1  [L=266]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-10   39.6   0.1    3.8e-09   36.7   0.0    2.5  2  HTH_31    Helix-turn-helix domain
    3.2e-07   30.3   0.0    8.1e-07   29.0   0.0    1.7  1  HTH_3     Helix-turn-helix


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   4.3e-13   3.8e-09       5      57 ..      11      62 ..      10      72 .. 0.94
   2 ?   -2.0   0.0      0.53   4.7e+03      42      52 ..     228     238 ..     222     247 .. 0.73

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 4.3e-13
      HTH_31  5 lLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                +Lr +R+  G sqee ++++g+s s++s +E+G r+ p+ +   a+ + ++l 
  KIR65171.1 11 ELRLFRASLGTSQEEFGRAIGYSGSHVSSVETGGRP-PTKEYMKAVDDHYQLG 62
                79*********************************7.*************985 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.53
      HTH_31  42 pspavlealar 52 
                   pa++++la 
  KIR65171.1 228 DAPADVARLAK 238
                 56788888886 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0     9e-11   8.1e-07       1      47 [.      12      58 ..      12      62 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 9e-11
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklaka 47
                l+  R  lg sqee+ +++G s s++s  E G r P+ e +k++ + 
  KIR65171.1 12 LRLFRASLGTSQEEFGRAIGYSGSHVSSVETGGRPPTKEYMKAVDDH 58
                68899***********************************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2061.20
//
Query:       KIR65172.1  [L=217]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-31  106.9   0.1    8.7e-31  106.4   0.1    1.2  1  Response_reg  Response regulator receiver domain
    2.3e-15   55.9   0.1      4e-15   55.1   0.1    1.3  1  GerE          Bacterial regulatory proteins, luxR family
    0.00023   20.6   0.1    0.00048   19.6   0.1    1.6  1  Sigma70_r4    Sigma-70, region 4
     0.0012   18.5   0.1     0.0023   17.6   0.1    1.5  1  Sigma70_r4_2  Sigma-70, region 4


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.1   1.9e-34   8.7e-31       1     111 [.       4     115 ..       4     116 .. 0.98

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 1.9e-34
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   vl+vdD+ lvr++lr +le  +++++v+ a+dg++al+ + ++++d++l+D++mpgmdG+ ++  ++++ + +pvi+lt+ ++++d+ +al+aga++
    KIR65172.1   4 VLLVDDEALVRAGLRLILEtADDLTVVGDAQDGRAALDAVTRHRPDVVLMDVRMPGMDGVAATAALQTRTNPPPVIMLTTFDTDDDVFRALEAGASG 100
                   89*****************889999************************************************************************ PP

                   EEESSG-HHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkal 111
                   fl K+  p+eLl a+
    KIR65172.1 101 FLLKDTPPTELLRAV 115
                   ***********9988 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.1     9e-19     4e-15       3      56 ..     156     209 ..     155     210 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 9e-19
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrl 56 
                 L+ RErevL  +  G +n +IA  l  Se TVk+h++++++KL + +rv+l+  
  KIR65172.1 156 LTGREREVLVEIGRGATNAQIAGCLRMSEATVKSHVTHLFEKLAAGNRVQLAIT 209
                 99*************************************************976 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   1.1e-07   0.00048       2      48 ..     153     198 ..     152     200 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.1e-07
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 L  L+ rerevl+   g+g T ++I+  l +S+ +V+++ +  ++kL
  KIR65172.1 153 LGGLTGREREVLVEI-GRGATNAQIAGCLRMSEATVKSHVTHLFEKL 198
                 789*********997.9*************************99999 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   5.1e-07    0.0023       3      49 ..     148     193 ..     146     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5.1e-07
                   HHHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHH CS
  Sigma70_r4_2   3 alrealaeLperqreifllryleglsykEIAellgisegtVksrlsR 49 
                   + ++ l  L+ r+re+++ +   g + ++IA  l +se+tVks++  
    KIR65172.1 148 EALARLGGLTGREREVLVEI-GRGATNAQIAGCLRMSEATVKSHVTH 193
                   66778899999********7.8**********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1670.13
//
Query:       KIR65173.1  [L=470]
Description: hypothetical protein TK50_06700 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3202.10
//
Query:       KIR65174.1  [L=700]
Description: hypothetical protein TK50_06710 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 5104.19
//
Query:       KIR65175.1  [L=310]
Description: protocatechuate dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-13   50.2   1.2    1.4e-07   31.1   0.0    3.2  2  Dioxygenase_C  Dioxygenase


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   8.1e-12   1.4e-07       3      66 ..      81     140 ..      79     146 .. 0.85
   2 !   13.0   0.7   2.9e-06     0.052      75     140 ..     204     251 ..     187     263 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 8.1e-12
                    -S--EET--EEESEEE---S--TT--EEEEEEEEE-T.TSSB-TT-EEEEE---TTS--TTS-TT CS
  Dioxygenase_C   3 gPlyveeapededlarledkgeeegerlvlsGrvlde.aGkplagalvelWhanaeGrYshkkee 66 
                    gP+y +      d++r + +++ eg+rl ++ rv d+ +  pla+a ve+Wh +aeG Ys  + +
     KIR65175.1  81 GPYYFD-----ADKIRSDIREDREGTRLRVAIRVQDSeQCGPLANAVVEIWHCDAEGLYSGAEAQ 140
                    566655.....788999999999************962678******************987665 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.9e-06
                    EEEEE--TTSEEEEEEE----EE--TTSHHHHHHHHTT---EE-SEEEEEEE-TTB--EEEEEEET CS
  Dioxygenase_C  75 rgriltdeeGryrirtikPapYpipndGptgklldalgrhawRPaHiHfsvsapghrklvTqlyfe 140
                    rg  +t+++G  +++ti P+ Y                    R  HiH +v  ++ r l+Tq+ f+
     KIR65175.1 204 RGAQVTNSDGIVEFTTIWPGWYRG------------------RTTHIHAMVHVDNNRVLTTQMMFD 251
                    566666666666666666666655..................559******************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2133.22
//
Query:       KIR65176.1  [L=169]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-15   56.9   0.0    2.9e-15   56.5   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    5.7e-09   36.0   0.0    7.9e-09   35.5   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
      1e-08   35.5   0.0    1.7e-08   34.8   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    7.5e-06   26.0   0.1    4.1e-05   23.7   0.1    2.1  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    1.8e-05   24.6   0.0    3.2e-05   23.8   0.0    1.3  1  FR47             FR47-like protein
     0.0001   23.0   0.3    0.00012   22.7   0.3    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.025   14.7   0.0      0.045   13.9   0.0    1.5  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
        0.1   12.3   0.0        1.7    8.3   0.0    2.3  2  DUF1999          Protein of unknown function (DUF1999)


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   1.3e-18   2.9e-15      19     116 ..      46     143 ..      25     144 .. 0.84

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 1.3e-18
                     HHHHHHHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHH CS
  Acetyltransf_1  19 aseeefeesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYe 113
                      ++++ ++ +++++    vae++g+l+Gf  + +++  ++ ++ ++ ++ +p  rg+G G+aL+++++  +r++g  + vl+v e n++a+r+Ye
      KIR65176.1  46 GWYWVERWTWERDDHLMTVAEREGRLVGFSYVGPDDAGDPATGLLNAIHLDPGERGRGTGRALMDDALATMRDRGWARAVLWVLEGNVPARRFYE 140
                     3344455557777777788***********9999999999***********************************9777999************9 PP

                     HTT CS
  Acetyltransf_1 114 klG 116
                     + G
      KIR65176.1 141 RGG 143
                     855 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   3.5e-12   7.9e-09      27     115 ..      56     153 ..      36     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 3.5e-12
  Acetyltransf_10  27 eegealllvaeeggkivGviel.rdgs......hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkavge 111
                      e  ++l+ vae++g++vG+  +  d+        +  +  dp  rg+G g+aL++++++ ++++g +   l v + +  a++fYe+ G++++ge
       KIR65176.1  56 ERDDHLMTVAEREGRLVGFSYVgPDDAgdpatgLLNAIHLDPGERGRGTGRALMDDALATMRDRGWARaVLWVLEGNvPARRFYERGGWQPTGE 149
                      57899***************997777689977777777999********************99999999888888888**************98 PP

  Acetyltransf_10 112 eqee 115
                       +e+
       KIR65176.1 150 SRED 153
                      8775 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   7.6e-12   1.7e-08       3      75 ..      60     145 ..      53     146 .. 0.75

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 7.6e-12
                     EEEEEEEETTEEEEEEEEEEES.....TCTEE.EEE-GGGTTSSHHHHHHH.HTT....SEEEEE.EEEE.THH.HHHHHHHHTTEE CS
  Acetyltransf_7   3 gevfVaeddgkivGfialslld.....aeitr.laVdpeyrgkGiGraLle.aae....kgiile.qlel.nae.kaikfYeklGFe 75 
                     + + Vae++g+ vGf ++ ++d     + + + +  dp  rg+G GraL++ a +    +g     +l++ + + +a++fYe+ G++
      KIR65176.1  60 HLMTVAEREGRLVGFSYVGPDDagdpaTGLLNaIHLDPGERGRGTGRALMDdALAtmrdRG-WARaVLWVlEGNvPARRFYERGGWQ 145
                     5678*****************99988744444799***************97522344556.222334443223599******9987 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   1.8e-08   4.1e-05      73     127 ..      87     146 ..       4     147 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.8e-08
                     EEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--SSH.....HHHHTTT-EE CS
  Acetyltransf_9  73 aagvtgVavapehrgrgvlskLlaraleemreegqplsllfPssi.....piYrrfGyei 127
                     ++ + ++  +p +rgrg  ++L++ al+ mr++g   ++l+  +      ++Y+r G+++
      KIR65176.1  87 TGLLNAIHLDPGERGRGTGRALMDDALATMRDRGWARAVLWVLEGnvparRFYERGGWQP 146
                     5667778889*******************************955444444********75 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.4e-08   3.2e-05      21      78 ..      87     145 ..      83     152 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.4e-08
                 TSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-.S-EEEEEETT-HHHHHHHHHHT-E CS
        FR47  21 ggelgalqvlpehrrrGlgsrlvkalakeiaerg.ktvllvvvasNtpsirlyeklGfe 78 
                  g l a+ ++p  r+rG g+ l     + ++ rg   ++l+v ++N p++r+ye+ G++
  KIR65176.1  87 TGLLNAIHLDPGERGRGTGRALMDDALATMRDRGwARAVLWVLEGNVPARRFYERGGWQ 145
                 6999****************************9934577788899**********8887 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.3   5.4e-08   0.00012       2     137 ..       3     144 ..       2     145 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 5.4e-08
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmry...lpe.....pltleeaeewlera.waeeseeegygwaivlkdtgviGsvglrdleeedee..aelgy 85 
                     ++Lr++t +Dl a+ +l ++ +v  y   lp      p+++++ + w+er+ w++    ++   ++ +++++ +G+  + + +  d +  +   +
      KIR65176.1   3 ITLRHATVDDLRAVGALHQRSRVAAYssfLPAealadPTEEAMGWYWVERWtWER----DDHLMTVAEREGRLVGFSYVGPDDAGDPAtgLLNAI 93 
                     69************77********98777555677768888888*****866665....777899989999769998777555555445444457 PP

  Acetyltransf_3  86 mlapsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                      l+p  +g+G ++  +  +l  + ++ g+ r v  + + N   +r +e+ G 
      KIR65176.1  94 HLDPGERGRGTGRALMDDALATM-RDRGWARAVLWVLEGNVPARRFYERGGW 144
                     788889*****************.7888*******************99886 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     2e-05     0.045      31      58 ..      94     121 ..      67     126 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2e-05
  Acetyltransf_CG  31 eVpeelrGkGiAkkLvkaalddareegl 58 
                        ++  rG+G +++L++ al  +r++g+
       KIR65176.1  94 HLDPGERGRGTGRALMDDALATMRDRGW 121
                      567888*********************9 PP

>> DUF1999  Protein of unknown function (DUF1999)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00075       1.7      51     107 ..      55     109 ..       6     119 .. 0.87
   2 ?    1.5   0.0      0.09     2e+02      43      72 ..     131     160 ..     127     165 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00075
     DUF1999  51 yeRsehsf.vaeeegelrGlvlaqsvWqGDrpivlvrrlllaeaadaevaaGLlravv 107
                 +eR +h   vae+eg+l G+ +      GD ++ l++++ l++    e  +G  ra++
  KIR65176.1  55 WERDDHLMtVAEREGRLVGFSYVGPDDAGDPATGLLNAIHLDPG---ERGRGTGRALM 109
                 789999754899******************************99...55555555555 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.09
     DUF1999  43 tslaaLkfyeRsehsfvaeeegelrGlvla 72 
                  +++a +fyeR +     e+++   G++l 
  KIR65176.1 131 GNVPARRFYERGGWQPTGESREDRIGAALT 160
                 568999*****9988888766655666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1121.88
//
Query:       KIR65177.1  [L=310]
Description: ribonuclease Z [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-16   61.0   0.9    2.5e-09   36.9   0.1    2.2  2  Lactamase_B_2  Beta-lactamase superfamily domain
    3.1e-11   43.7   4.9      4e-11   43.3   0.8    2.6  2  Lactamase_B    Metallo-beta-lactamase superfamily
  ------ inclusion threshold ------
      0.017   15.0   0.0       0.03   14.2   0.0    1.4  1  Lactamase_B_3  Beta-lactamase superfamily domain
       0.12   12.1   0.0       0.25   11.0   0.0    1.6  1  Lactamase_B_4  tRNase Z endonuclease


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   1.3e-08   5.7e-05       3     130 ..      34     151 ..      32     160 .. 0.67
   2 !   36.9   0.1   5.6e-13   2.5e-09     129     201 .]     196     268 ..     179     268 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.3e-08
                    EEES--TTHHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCC.....C--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-.T CS
  Lactamase_B_2   3 iLiDagpdlrqqalralqPvelrdelppidaVllthaHyDHlaglltlre.....lrpkklplyapkgvlavleanfvylaleeepavnvheld.w 92 
                    iL+D+g +   q +++l+ +    +  ++  + +th H DH+ gl+   +     + p+ + ++ p+g +++ ++  ++  + e ++++v+++   
     KIR65177.1  34 ILLDPGEGS--Q-RQLLHTG---VTATDLTRICVTHFHGDHCLGLPGTIQrlsldRVPRPVAVHFPAGGADYFARLRHASSFHETAELAVEPISaD 123
                    9*******4..4.2333333...35569999**************977665766555554777777777777777766665555578888888745 PP

                    TSEEEECSTTEEEEEEEE-EE--CTCCE-TTTSEEEEE CS
  Lactamase_B_2  93 gesfelgdggleitatparhksgrrldrnagdtlGlri 130
                    g++++l +gg+ ++a  +rh           +t+G+r+
     KIR65177.1 124 GQRVALRGGGI-LEARRLRHPI---------ETYGYRL 151
                    66677765664.6666555543.........4477766 PP

  == domain 2  score: 36.9 bits;  conditional E-value: 5.6e-13
                    EEECTTEEEEEESS-S---HHHHHHHCT-SEEEEE-S-SSTTHHHH.HHT---STSHHHHCTTSSSSEEEEESB CS
  Lactamase_B_2 129 riegggkrvyyigDtgyipeeigerlggadllllditayeddemir.hmgHltpeeaveaaadlgakrlvliHi 201
                     ++++g+r++++ Dtg ++  + ++ + adll+++ t++ ++   + + gHlt ++a+++a++ g+++lvl+H+
     KIR65177.1 196 SVTRPGQRFAFVMDTGLCD-NVYALAEHADLLVIESTFLASEAALAaEVGHLTAGQAARVATESGVRTLVLTHF 268
                    5789************999.6678****************9998879**************************7 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.8   8.9e-15     4e-11       4     127 ..      20     145 ..      17     152 .. 0.86
   2 ?    0.4   0.0      0.12   5.4e+02      33      53 ..     241     268 ..     199     268 .. 0.62

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 8.9e-15
                  CSSEEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHH.... CS
  Lactamase_B   4 dpvnsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkgll.... 97 
                  +++n y+++ d++viL D+G +++++++       g+   d++++++TH+H DH+ gl+g +++     +  + + + + + + ++a+ r+ +     
   KIR65177.1  20 RNHNGYVLRWDDEVILLDPGEGSQRQLLH-----TGVTATDLTRICVTHFHGDHCLGLPGTIQRLSLDRVPRPVAVHFPAGGADYFARLRHASSfhet 112
                  68899**********************97.....9**************************************************9999998888888 PP

                  ...TTCHCGCCEEEEETTTEECCCTEEEEEHEC CS
  Lactamase_B  98 ...lagvsadkpdvdeeeldgnaggrralyvtg 127
                     + ++   + +++ + + g++  rr+ +++ 
   KIR65177.1 113 aelAVEPISADGQRVALRGGGILEARRLRHPIE 145
                  777666666666666666666666666666655 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.12
                  H.......HHHHHTSGGGGEEEEE-SBS CS
  Lactamase_B  33 l.......elaalglkpkdvdavilTHl 53 
                            aa+      v++++lTH+
   KIR65177.1 241 AevghltaGQAARVATESGVRTLVLTHF 268
                  1466666666677888889999999995 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   6.6e-06      0.03       7      50 ..      22      69 ..      20     149 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.6e-06
  Lactamase_B_3  7 hnsflletagarilvDPf....kanlgyeppaeeaDlvlisqaledHa 50
                   hn ++l++++ +il+DP+    ++ l+++  a +   +++++ + dH+
     KIR65177.1 22 HNGYVLRWDDEVILLDPGegsqRQLLHTGVTATDLTRICVTHFHGDHC 69
                   999***************5543225677777899999**********9 PP

>> Lactamase_B_4  tRNase Z endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.7e-05      0.25      17      56 ..      27      65 ..      14      71 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.7e-05
  Lactamase_B_4 17 LqldskrYlfGkvgEgtQRavneqkvrlsklesiFLtgkv 56
                   L+ d++  l+ + gEg+QR + + +v  + l+ i +t+ +
     KIR65177.1 27 LRWDDEVILL-DPGEGSQRQLLHTGVTATDLTRICVTHFH 65
                   6666666677.89************************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2172.68
//
Query:       KIR65178.1  [L=395]
Description: peptidase M42 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-55  185.9   0.4      9e-55  185.7   0.4    1.0  1  Peptidase_M42   M42 glutamyl aminopeptidase
    1.1e-08   35.0   0.9    2.4e-08   33.9   0.9    1.6  1  Peptidase_M20   Peptidase family M20/M25/M40
  ------ inclusion threshold ------
       0.14   12.4   0.0       0.31   11.2   0.0    1.6  1  Iron_transport  Fe2+ transport protein


Domain annotation for each model (and alignments):
>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.7   0.4   1.5e-58     9e-55       1     292 []      57     348 ..      57     348 .. 0.95

  Alignments for each domain:
  == domain 1  score: 185.7 bits;  conditional E-value: 1.5e-58
                    S-EEEEEES.STTSSEEEEEEE--B-EEEEEEEETTSEEEEEEESS--GGGTTTEEEEEEETTE..EEEEEEEE--C..GGCHHHHHHCT--GC.. CS
  Peptidase_M42   1 Gnliakkkg.kekepkvmiaAHmDeiGfmVkeIkedGflrfekvGGvdpkvlegqrvkiltkkg..kisGvigskpp..Hllkeeerkkaleik.. 89 
                    G+l a ++g +e++ +++i+ H D+iG mVk +ke+G+l++ +vG  +++++eg +v+i+t++    isG ++  ++  H ++e+ + + + ++  
     KIR65178.1  57 GALSACLPGpRETGADRAIVVHTDTIGGMVKRLKENGRLELMQVGTHSARFAEGAHVRIFTDDLdrVISGQVLPLKAsgHRYNEAVDLQGVGWEqv 152
                    67888889989999************************************************988889**999999999****9999999886633 PP

                    GEEEEGSGSSHHHHHHTTS-TT-EEEES---EEETTECEEETTHHHHHHHHHHHHHHHHHCTSS-S..SEEEEEEESTCTTTSHHHHHHHHHH--S CS
  Peptidase_M42  90 elfiDigakskeeaeelGisvGdivvfdkefvelangkivskalDdragvavllellkelkeeele..atvylvatvqEEvGlrGaktsaekikpd 183
                    e+++D  +++++ +++lGi+vGd+v+f ++++++ +g+++s++lDd+agva++l+++k+l +  +   +t +l++tv+EE+G+++++ +  +  + 
     KIR65178.1 153 EVRVDEPVADEAGLRALGIDVGDFVAFLPNPTITPSGYVKSRHLDDKAGVAAVLTAFKALVDAGVTpaVTAHLLVTVTEEIGHGASHGLDPD--VA 246
                    78*************************************************************99999*******************88888..99 PP

                    EEEEEEEEEE-CSTTSTTTTSSTTS-CEEEEEETTCCSHHHHHHHHHHHHHHTT--EEEEEESSSSSTHHHHHTSTTTSEEEEEEEEEBSTTSTTE CS
  Peptidase_M42 184 iaiavDvtaagdtpgskekeaklgkGpvirvkDasgiyhpklrkkllelAkknnipyqlevlsgggtDAgaihltgegvptalisiptryiHspve 279
                    +++ vD ++++  ++s+e+       +++ + D  g+++++l+++l ++A+++++++  +v++ + +D +a++ +g+  ++al++++++++H+  e
     KIR65178.1 247 EIVSVDAAVVAPGQQSRENA------ATLAMGDGVGPFDYHLTRNLAAIAREHGVDLVRDVFEFYRSDVAAAVEAGAHARVALLGFGVDATHG-HE 335
                    9*****************99......*******************************************************************.9* PP

                    EEEHHHHHHHHHH CS
  Peptidase_M42 280 vahlddleatvkL 292
                    ++hld l ++ +L
     KIR65178.1 336 RTHLDGLGHLTQL 348
                    *****99887765 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.9     4e-12   2.4e-08      26     201 ..     187     349 ..     175     355 .. 0.56

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 4e-12
                    TTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHTTTCESEEEEEEEESSSBTCHST.....ETEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxx RF
  Peptidase_M20  26 edGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.gleerekvdavfelhieepgileagk.....laigvv 115
                    + G++  r + d+k+gv+a+l a++al d+g++p  t +ll+++ EE+g  Ga + l+  + e   vda++   +  pg  ++++     ++ gv+
     KIR65178.1 187 PSGYVKSR-HLDDKAGVAAVLTAFKALVDAGVTPAVTAHLLVTVTEEIG-HGASHGLDpDVAEIVSVDAAV---VA-PGQQSRENaatlaMGDGVG 276
                    55899999.**************************************98.777665554333466788855...44.4444434411233333333 PP

                    EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSC.EEEEEESSSBHTHHHH......TTTEEEEEEESSGGCTTSTTTEEEHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 116 kvevelleggapvtlndsplvkalaeaaeelfgek.velivsgpggtdarff......agiptvmifgpgsglaHspnEyvdledlekgikvl 201
                     ++++              l++ la++a+e  g++ v+++    + +d +        a++ ++++fg +   a + +E+++l+ l   +++l
     KIR65178.1 277 PFDYH--------------LTRNLAAIAREH-GVDlVRDV-FEFYRSDVAAAveagahARV-ALLGFGVD---ATHGHERTHLDGLGHLTQLL 349
                    33333..............333333333332.33322221.22133333333231100233.34445533...33344555555555555555 PP

>> Iron_transport  Fe2+ transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.2e-05      0.31      73     135 ..     115     204 ..      96     215 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.2e-05
                     EEETT----EEEE-EEEEETTEEEEEEEE--T-SEEEEEEEEEE---TTT............................-EEE-STTTS--- CS
  Iron_transport  73 ltkkksgeaksgtlmpmvasDgphYganvklkgvgkYkltleieppekke............................fgrHvdketgvae 135
                     +   + + ++sg++ p+ as g  Y + v l+gvg  +++++++ p ++e                              rH d + gva+
      KIR65178.1 115 IFTDDLDRVISGQVLPLKAS-GHRYNEAVDLQGVGWEQVEVRVDEPVADEaglralgidvgdfvaflpnptitpsgyvKSRHLDDKAGVAA 204
                     5556668999*******997.99********************999888766666555555555555555555555445566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.20s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2959.75
//
Query:       KIR65179.1  [L=625]
Description: GNAT family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-10   38.8   0.0    7.6e-06   25.6   0.0    2.2  2  RimK             RimK-like ATP-grasp domain
    1.5e-06   27.9   0.0    5.3e-05   22.8   0.1    2.4  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    5.8e-06   26.5   0.0      2e-05   24.8   0.0    1.9  2  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.2e-05   23.3   0.0    0.00087   18.6   0.0    2.4  2  ATPgrasp_ST      Sugar-transfer associated ATP-grasp
    0.00019   21.3   0.0    0.00043   20.2   0.0    1.6  1  FR47             FR47-like protein
    0.00043   20.4   0.0      0.003   17.6   0.0    2.0  1  ATP-grasp_3      ATP-grasp domain
     0.0012   18.8   0.0     0.0024   17.8   0.0    1.5  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0024   18.3   0.0       0.01   16.2   0.0    2.1  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0024   17.3   0.0      0.012   15.0   0.0    2.1  2  GSH-S_ATP        Prokaryotic glutathione synthetase, ATP-gras
  ------ inclusion threshold ------
      0.028   13.7   0.0       0.27   10.4   0.0    2.2  2  ATPgrasp_YheCD   YheC/D like ATP-grasp
      0.028   13.9   0.0       0.34   10.4   0.0    2.2  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
      0.035   14.3   4.9       0.17   12.0   0.3    3.3  2  Acetyltransf_6   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   5.1e-09   7.6e-06       2     106 ..     360     462 ..     359     469 .. 0.85
   2 !   10.9   0.0   0.00017      0.25     114     173 ..     528     592 ..     520     598 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 5.1e-09
                 H-HHHHHHHHHHTT-----EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHHGGG--EEEEE--SS-S.EEEEEEEETTEE CS
        RimK   2 rdKlkslklLakakikvpntalardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlealkeailvqeyieeaen.ediRvlvvddev 99 
                 +dK  + ++L  a++ vp  + a +++  ++++ +++    vvvK   g+qG ++ +   + ++     al  +      ie+  + ed+Rv+v+d ev
  KIR65179.1 360 DDKRVTRRILTEAGLSVPAGRTATGDDADVAFLAEVG---RVVVKPARGEQGNGITVGVRTPEALTAAVALARSFCPDVLIEQMRDgEDLRVIVIDHEV 455
                 7999999*****************************7...8*************998755555555557899999888888876544************ PP

                 EEEEEEE CS
        RimK 100 vaalrrv 106
                 vaa  r+
  KIR65179.1 456 VAAAVRR 462
                 *987665 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00017
                 --TTTT-EEEE--..--HHHHHHHHHHHHHCT-SEEEEEEE...EETTEEEEEEEESS--SHHHH CS
        RimK 114 snlhrGgvaeklq..lseeekelAikaakamelvvaGvDll...rakrgllvlEvnsspglekie 173
                 +nlh Gg    ++  l +   e  + a++a+++ v+G+Dll   + + + +++E n  pgl + e
  KIR65179.1 528 ANLHTGGTIHDVTgeLHPAIAEACVAASRALDIPVTGLDLLvsaPDDPEHVFIEANERPGLANHE 592
                 79****99987743499999*******************77333346789**********98765 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   3.6e-08   5.3e-05      39     100 ..     398     460 ..     388     483 .. 0.84
   2 ?    2.3   0.0     0.071   1.1e+02     131     186 ..     540     596 ..     535     606 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 3.6e-08
                      EEEEESSSSTTTTEEE.ESSGGGHHHHHHHHHTT-SCEEEEE--ESEEEEEEEEETSSCEEEE CS
  Dala_Dala_lig_C  39 vfVKpareGSSvGvsk.veseeelkeaieeafkydekvlvEeaiegreievavlgneklevse 100
                      v+VKpar     G++  v++ e l++a++ a ++  +vl+E++ +g+++ v v++ e + +++
       KIR65179.1 398 VVVKPARGEQGNGITVgVRTPEALTAAVALARSFCPDVLIEQMRDGEDLRVIVIDHEVVAAAV 460
                      89****9888888875499************************************77655443 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.071
                      -HHHHHHHHHHHHHHHHHTT--SEEEEEEEE..ETTTEEEEEEEESS---STTSHHHH CS
  Dala_Dala_lig_C 131 ekeveekiqelalkaykaldlrGlaRvDffl..teegeivlnEvNtlPGfTeiSlfpk 186
                      + e + +i e+ + a +ald+  ++ +D+++   ++ e v+ E N  PG+ ++   p+
       KIR65179.1 540 TGELHPAIAEACVAASRALDIP-VTGLDLLVsaPDDPEHVFIEANERPGLANHEPQPT 596
                      5566778888888999999886.55689999544567899**********99877666 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.3e-08     2e-05      35     117 .]     187     274 ..     162     274 .. 0.83
   2 ?   -2.4   0.0       3.7   5.5e+03      61      76 ..     393     410 ..     384     412 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.3e-08
                     EEEEEET..TEEEEEEEEEEEET...TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  35 llvaeed..geliGfisllkipd...ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     l ++ ed  g ++G+i++           + a ++ l V+ +    G G+aLl++l+ r+  +g   + l v + n++airlYe+lGF
      KIR65179.1 187 LHLVAEDatGDVVGTITGVDHVAvfaDPDNGASLWCLTVDFNTAPPGTGQALLTELAARLTARGRAFVDLSVLAENTGAIRLYERLGF 274
                     33333333688999997776666787667999999****************************88888*******************9 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.7
                     EEEEEEEESGGG..TTSS CS
  Acetyltransf_1  61 ayieslaVspey..rgkG 76 
                     a++ +++V+p++  +g+G
      KIR65179.1 393 AEVGRVVVKPARgeQGNG 410
                     78999*****99555555 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   5.9e-07   0.00087      16      82 ..     356     417 ..     345     432 .. 0.81
   2 ?    1.9   0.0     0.072   1.1e+02     228     269 ..     547     589 ..     524     595 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5.9e-07
  ATPgrasp_ST  16 fplvddKlkfkelalraglkvpkllgvikeqaeiseleafvkeleegvviKpakgsgGkGilviter 82 
                  +   ddK ++++++ +agl+vp+  g   ++++++   af++e+ + vv+Kpa+g  G+Gi+v  ++
   KIR65179.1 356 MSRCDDKRVTRRILTEAGLSVPA--GRTATGDDAD--VAFLAEVGR-VVVKPARGEQGNGITVGVRT 417
                  56679******************..5555555544..478888844.***************98765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.072
  ATPgrasp_ST 228 vlelaakaaeklpglgylGwDivldeekgp..lllElNarpgla 269
                  + e ++ a+   + + + G+D+ + +  +p  + +E+N+rpgla
   KIR65179.1 547 IAEACVAASR-ALDIPVTGLDLLVSAPDDPehVFIEANERPGLA 589
                  4444444444.777888999998877665544899*****9986 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.9e-07   0.00043      23      79 ..     219     276 ..     207     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.9e-07
                 SEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EE.EEEETT-HHHHHHHHHHT-EE CS
        FR47  23 elgalqvlpehrrrGlgsrlvkalakeiaergktvl.lvvvasNtpsirlyeklGfek 79 
                 +l  l v+ +    G g+ l  +la+++ +rg   + l v a+Nt +irlye+lGf  
  KIR65179.1 219 SLWCLTVDFNTAPPGTGQALLTELAARLTARGRAFVdLSVLAENTGAIRLYERLGFYR 276
                 5666666667777799****************9865488999**************76 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     2e-06     0.003       1     103 [.     359     486 ..     359     588 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2e-06
                  HTSHHHHHHHHTTT.S---..........-EESS--SSSEEEEESS-------B--SS--TTE..............EEEE---SEEEEEEEEE.SSS CS
  ATP-grasp_3   1 asdKlktykkLkeagvkvP......tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve.......lvqefieGkplSvsllsdgek 85 
                  + dK+ t + L eag+ vP          +  +  e  ++vvKp++G  g++++v    +ea +a   ++       l+ ++ +G++l v ++ ++  
   KIR65179.1 359 CDDKRVTRRILTEAGLSVPagrtatGDDADVAFLAEVGRVVVKPARGEQGNGITVGVRTPEALTAAVALArsfcpdvLIEQMRDGEDLRVIVIDHEVV 456
                  78*****************9865433333445556699****************99888777755555446777777777777788877777775555 PP

                  EEEEEEEEEEEET................T CS
  ATP-grasp_3  86 vlvlavnrqliekaeke............f 103
                  +  +  + q+ + + ++             
   KIR65179.1 457 AAAVRRPAQVTGDGVHDvaelierqsrrrA 486
                  555555555554444435555555555554 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.6e-06    0.0024      53     114 ..     219     282 ..     175     286 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.6e-06
  Acetyltransf_10  53 hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkavgeeqe 114
                       +  l Vd +    G g+aLl ++ +++  +g +  +l+v a +  a+++Ye+lGF ++   ++
       KIR65179.1 219 SLWCLTVDFNTAPPGTGQALLTELAARLTARGRAFvDLSVLAENtGAIRLYERLGFYRTATLCV 282
                      56667788888888**************8888888*********9***********99877665 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     7e-06      0.01       5      75 ..     188     275 ..     183     276 .. 0.68
   2 ?   -2.3   0.0       4.2   6.3e+03      25      40 ..     393     410 ..     379     411 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7e-06
                     EEEEEET.TEEEEEEEEEEES.........TCTEEEEE-GGGTTSSHHHHHHHH..TT...SEEE....EEEEEE.THHHHHHHHHHTTEE CS
  Acetyltransf_7   5 vfVaedd.gkivGfialslld.........aeitrlaVdpeyrgkGiGraLlea..ae...kgii....leqlel.naekaikfYeklGFe 75 
                     ++Vaed  g +vG+i  + +          a++++l Vd +    G G+aLl+   a+   +g +    l+   l +++ ai++Ye+lGF 
      KIR65179.1 188 HLVAEDAtGDVVGTITGVDHVavfadpdngASLWCLTVDFNTAPPGTGQALLTElaARltaRG-RafvdLS--VLaENTGAIRLYERLGFY 275
                     568888887788877766666788787776666668999999999*******85331245566.2222222..3333349**********5 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.2
                     TCTEEEEE-GG..GTTSS CS
  Acetyltransf_7  25 aeitrlaVdpe..yrgkG 40 
                     ae +r++V+p+   +g+G
      KIR65179.1 393 AEVGRVVVKPArgEQGNG 410
                     356679999962245554 PP

>> GSH-S_ATP  Prokaryotic glutathione synthetase, ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.97   1.4e+03     131     154 ..     238     261 ..     234     268 .. 0.84
   2 !   15.0   0.0   8.3e-06     0.012      26     104 ..     390     464 ..     375     474 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.97
                 HHHHHHHHHHHTT--EEEEEEETT CS
   GSH-S_ATP 131 iaeelapkLkekGllfvGlDvigd 154
                 + +ela +L+++G  fv l v+ +
  KIR65179.1 238 LLTELAARLTARGRAFVDLSVLAE 261
                 5678999************99876 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 8.3e-06
                 HHHHHHSSEEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG-.EEEEEEETTEE-SEEEEEE- CS
   GSH-S_ATP  26 afleeqgdvilKPldgkgGegvfrvkksdpnlksilellteegkepviaqrylpeikeG.DkRillvdGepigyalaRvp 104
                 afl+e g+v++KP  g+ G+g+    ++ + l++ + l  +           ++++++G D R++++d e + +a++R +
  KIR65179.1 390 AFLAEVGRVVVKPARGEQGNGITVGVRTPEALTAAVALARSFC-----PDVLIEQMRDGeDLRVIVIDHEVVAAAVRRPA 464
                 799*******************998888877777766554444.....45556778888689***********8888854 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00018      0.27      41      65 ..     388     412 ..     361     426 .. 0.83
   2 ?    0.5   0.0       0.2   2.9e+02     208     231 ..     564     589 ..     506     604 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
  ATPgrasp_YheCD  41 leemlekyksvylKpanGskGkgil 65 
                       ++l++ ++v++Kpa+G +G+gi 
      KIR65179.1 388 DVAFLAEVGRVVVKPARGEQGNGIT 412
                     5689*******************97 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.2
  ATPgrasp_YheCD 208 GlDlgidk..egkvWllEvNskpgrs 231
                     GlDl +    + +  ++E+N +pg +
      KIR65179.1 564 GLDLLVSApdDPEHVFIEANERPGLA 589
                     77777764114466788999999874 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00023      0.34       1      87 [.     361     439 ..     361     456 .. 0.87
   2 ?    0.7   0.0      0.21   3.1e+02     136     179 ..     542     585 ..     530     589 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00023
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEE.ESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrv.arneeelaelvkkalaeakaafgnkqvlvek 87 
                  Dk+  +++l +++  v  + +a  +  +  +a+ +e+g  v++k+a g  G+G  v +r+ e l+++v+ a++        + vl+e+
   KIR65179.1 361 DKRVTRRILTEAGLSVPAGRTA--TGDDADVAFLAEVGR-VVVKPARGEQGNGITVgVRTPEALTAAVALARSFC------PDVLIEQ 439
                  899999*************999..66777799999***5.99************997899999999999988877......5666665 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.21
                  HHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS CS
  CPSase_L_D2 136 eerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtR 179
                  e + a+ ea+v++ r++++   g    +  p++ e+++iE N R
   KIR65179.1 542 ELHPAIAEACVAASRALDIPVTGLDLLVSAPDDPEHVFIEANER 585
                  55667899999999999999888655555669999*****9988 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   0.00011      0.17      17     134 ..     143     257 ..     136     263 .. 0.77
   2 ?    1.7   0.2      0.17   2.6e+02      29     107 ..     469     548 ..     455     553 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
  Acetyltransf_6  17 lgevrfrvatdpedleallelfraqwarr..pdvfadpltraflrdllaalaargalrlyvlrldgrpvAvalglrsgdrlyywlggydpelakl 109
                     l ++r+r+ +d++d++a+ + +++  + +   dv  d ++++ + +l+a+ a  g+  ++    +   vAv+     ++ + +w+ ++d   a  
      KIR65179.1 143 LPGLRIRTLRDADDADAVNRIYARNGMVTapVDVLVDNARTDRFLHLVAEDA-TGD--VVGTITGVDHVAVF--ADPDNGASLWCLTVDFNTAPP 232
                     458999****************999999999888888877776666666653.454..44444444445544..345557889999999999999 PP

  Acetyltransf_6 110 spgllllweliedaaeeGlrrfdlg 134
                     + g+ ll el++++ ++G++ +dl 
      KIR65179.1 233 GTGQALLTELAARLTARGRAFVDLS 257
                     9**********************96 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.17
  Acetyltransf_6  29 edleallelfraqwarr...pdvfadpltraflrdllaalaargalrlyvlrldgrpvAva..lglrsgdrlyywlggydpela 107
                     + ++ + el ++q +rr   +++ ++  + ++ r+++a+       +l+ +  +g+++Av   ++l+ g++++   g  +p++a
      KIR65179.1 469 DGVHDVAELIERQSRRRaaaTGGESRIPVDDMTREVVAEA----GYELSDVLPEGTVLAVRrtANLHTGGTIHDVTGELHPAIA 548
                     4444444444445444433356666666777777777776....6778888888888888777888888888888777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 4080.05
//
Query:       KIR65180.1  [L=594]
Description: asparagine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-87  295.1   0.0    1.3e-87  294.8   0.0    1.1  1  Asn_synthase   Asparagine synthase
    5.2e-40  136.2   0.0      9e-40  135.4   0.0    1.4  1  GATase_7       Glutamine amidotransferase domain
    6.4e-37  126.7   0.0    1.6e-36  125.5   0.0    1.7  1  GATase_6       Glutamine amidotransferase domain
  ------ inclusion threshold ------
      0.035   12.9   0.1      0.049   12.4   0.1    1.2  1  tRNA_Me_trans  tRNA methyl transferase
       0.18   11.2   0.0       0.29   10.6   0.0    1.2  1  QueC           Queuosine biosynthesis protein QueC


Domain annotation for each model (and alignments):
>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.8   0.0   3.5e-91   1.3e-87       2     355 .]     245     589 ..     244     589 .. 0.94

  Alignments for each domain:
  == domain 1  score: 294.8 bits;  conditional E-value: 3.5e-91
  Asn_synthase   2 lrelLedaVkrrlradvpvGalLSGGlDSSliaalaarqsksplktFsigfee...kgsdeakyakevaehlgtehtelvlteeelldalpdviyhl 95 
                   l e L+ aV+rr++advpvG+lLSGGlDSSl++al+a+q ++ l tFsigf++   ++ de  y   va+ + t+h+++++ +++ll +l++++ ++
    KIR65180.1 245 LLESLTTAVRRRMVADVPVGVLLSGGLDSSLVVALLAEQGQRGLATFSIGFDAvggRSGDEFVYSDIVAKTFDTDHHQIRVAARDLLPPLEAAVAAM 341
                   6789***********************************************66778***************************************** PP

  Asn_synthase  96 eepfadrsaiplyllsrlakrkgvkvvLsGeGaDElfgGYpyfykaalsrsrefeklplarslrasllarklrklaellelaeardleelaelyrlk 192
                    ep+++   ++ +lls+++ +++vkvv sG+GaDE+ gGY+ +y +++  +re     + +  +++ l+r+ + la++l  a+  d +   e++ + 
    KIR65180.1 342 SEPMVSHDCVAFWLLSQEV-SRHVKVVQSGQGADEILGGYH-WYPPLAGVDRER----AVETYAKAFLDRDAAGLARVLDPAWLADGDPAREFVAAH 432
                   *******************.888******************.888776666666....7889999999***********999999998766664444 PP

  Asn_synthase 193 asdsaeaelegedelhrelyldlktllpgdllrk.DrasmahglEaRvPflDhrlvevalrlppelklrggieKyiLRealegylPeeileRpKegf 288
                         a + ++++++  l +d++ +l++d +++ D+++mahglEaRvPflDh++ve+a+++ppelkl  + +K +L+e+ +++lP e+++RpK  f
    KIR65180.1 433 -----LARPGAQTAVDAGLRIDTQIMLTDDPVKRvDNMTMAHGLEARVPFLDHEFVELAATCPPELKLA-QGGKGVLKEIGRRVLPHEVIDRPKGYF 523
                   .....45689***********************************************************.88************************* PP

  Asn_synthase 289 sapvgewklkgelrelaeellsdsrlakeglldreaveelleehea.gkrnesrqlwslllsleawle 355
                   ++p  ++ l+g+l +++++ l    +++++l+++e+v++ll +++a  ++ ++++lw+l   le+wl+
    KIR65180.1 524 PVPGLTH-LEGKLLDRVRDALHAPAARHRNLFRTEYVDALLADPNAeLTPLNGNKLWQLG-LLEMWLQ 589
                   *******.99***********************************9889***********.*****96 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.4   0.0   2.5e-43     9e-40       1     123 []      47     167 ..      47     167 .. 0.96

  Alignments for each domain:
  == domain 1  score: 135.4 bits;  conditional E-value: 2.5e-43
    GATase_7   1 hrrlsi.idseagaQPmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllalleaewgeealerlnGmfAfaiwdeeekrlllaRDrlG 98 
                 hrrl+i ++s+a+ QP+v +    l+ vfnG++yNy+elreeL+a+ghrf +++D+ev+++++++ wg +++++l GmfA+ai +++++rl+laRDrlG
  KIR65180.1  47 HRRLKIiDLSAASGQPLV-DPASGLTGVFNGCVYNYRELREELQARGHRFFSSGDSEVVVKAYAE-WGLDFVDHLVGMFAVAISERDTGRLVLARDRLG 143
                 89***9788899******.57788***************************************97.********************************* PP

    GATase_7  99 ikPLyygedkgdallfaSelkalla 123
                 ikPLy++e++g  + faS+l alla
  KIR65180.1 144 IKPLYVAESPG-VVRFASTLPALLA 167
                 *********96.**********985 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5   0.0   4.3e-40   1.6e-36       1     133 [.      32     160 ..      32     161 .. 0.97

  Alignments for each domain:
  == domain 1  score: 125.5 bits;  conditional E-value: 4.3e-40
    GATase_6   1 pdasglaslvedevalaHvRlaivglaeeega.qPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevllalleelGeevlerlrGmfaf 98 
                 pd+sg+  + ++ val+H+Rl+i++l+  ++  qP++ ++++l+ v+NG +yny+elreel+a +g++f s  D+ev++++++e+G + +++l+Gmfa+
  KIR65180.1  32 PDDSGV--WSQGAVALGHRRLKIIDLS--AASgQPLVDPASGLTGVFNGCVYNYRELREELQA-RGHRFFSSGDSEVVVKAYAEWGLDFVDHLVGMFAV 125
                 799***..******************9..4444******************************.*********************************** PP

    GATase_6  99 aiwdkrentlilardrlgvkplyyavdesglafas 133
                 ai ++++++l+lardrlg+kply+a++ + + fas
  KIR65180.1 126 AISERDTGRLVLARDRLGIKPLYVAESPGVVRFAS 160
                 ***************************99999998 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.4e-05     0.049       3      28 ..     263     288 ..     261     326 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.4e-05
  tRNA_Me_trans   3 vvvalSgGVDSsvaaallkeqgyevi 28 
                    v v+lSgG DSs+++all+eqg+   
     KIR65180.1 263 VGVLLSGGLDSSLVVALLAEQGQRGL 288
                    789******************98655 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   8.1e-05      0.29       4      58 ..     265     322 ..     263     339 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.1e-05
                 EE--SSHHHHHHHHHHHHH-SE...EEEEEEE.SS-TTSHHHHHHHHHHHHT--.-EEE CS
        QueC   4 vllSGGlDSttvlalakkegke...vealtfd.Ygqrhkkeleaakkiakelgveehki 58 
                 vllSGGlDS+ v+al  ++g++      ++fd  g r   e  + + +ak+++  +h+ 
  KIR65180.1 265 VLLSGGLDSSLVVALLAEQGQRglaTFSIGFDaVGGRSGDEFVYSDIVAKTFDT-DHHQ 322
                 89**********999999886521133344442355666666666666666666.5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4116.49
//
Query:       KIR65181.1  [L=220]
Description: methionine sulfoxide reductase A [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-67  225.6   0.1    3.5e-67  225.3   0.1    1.0  1  PMSR      Peptide methionine sulfoxide reductase


Domain annotation for each model (and alignments):
>> PMSR  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.3   0.1     2e-71   3.5e-67       2     153 .]      48     203 ..      47     203 .. 0.97

  Alignments for each domain:
  == domain 1  score: 225.3 bits;  conditional E-value: 2e-71
                 EEEE-S-HHHHHHHHCTSTTEEEEEEEEESSS-SS--HHHHHTTTT--EEEEEEEEETTTS-HHHHHHHHHHTS-TT-SSEETTEESGGG--EEEESSC CS
        PMSR   2 avlagGCFWgveklfeklkGvlstevGYagGktenptYeevcsgktghaEavevvydpekvsleellelffeihDptqlnrqgnDvGtqYrsaiyytne 100
                 av+++GCFWg+e+lf++l+Gvl+t+vGYagG t+nptYeevcsg+tgh+E+v+vvydp+++s+e+ll++f+e+hDptq++rqgnDvGtqYrsaiy++++
  KIR65181.1  48 AVFGMGCFWGAERLFWTLPGVLTTSVGYAGGITPNPTYEEVCSGMTGHTEVVQVVYDPTVISYEDLLKVFWENHDPTQGMRQGNDVGTQYRSAIYASTD 146
                 89************************************************************************************************* PP

                 CHHHHHHHHHHHHHTT..HTTSSS---EEEEG-SEEE--CCCTTHHH..H-TTS--T CS
        PMSR 101 eqkevaeevleelqkk..kalkkkivteieplkefykaeeyHqqYle..knpegych 153
                 eq ++a++++++++    +a+k++i+tei +l+++y ae+yHqqYl+  knp+gyc+
  KIR65181.1 147 EQLATATASRDAFAPIvaRAGKGEITTEIDRLGDYYFAEDYHQQYLAptKNPNGYCN 203
                 ************998777899*************************5559******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1633.27
//
Query:       KIR65182.1  [L=137]
Description: HIT family hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-17   62.0   0.0    8.4e-17   61.7   0.0    1.1  1  HIT       HIT domain
      1e-07   32.4   0.0    1.3e-07   32.0   0.0    1.1  1  DcpS_C    Scavenger mRNA decapping enzyme C-term binding
  ------ inclusion threshold ------
       0.19   11.6   0.1       0.84    9.5   0.1    1.8  1  CwfJ_C_1  Protein similar to CwfJ C-terminus 1


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   1.4e-20   8.4e-17       4      97 ..      14     105 ..      11     106 .. 0.91

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 1.4e-20
                 C-CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-EEEEEEC-T CS
         HIT   4 ipstvvyeddlvlafldidpkapghlLvipkkhlselhdlteeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlHiHviprre 97 
                  p+  v ++++ +afld +p  +ghlLv+p++hl  l dl++ el  ++ +v+++a a+++ + + g+ v++nn  +  qsv+hlH+Hv+pr +
  KIR65182.1  14 VPAFRVADTPEGVAFLDTRPVFKGHLLVVPRTHLVSLADLPAGELPGYFGLVQRLAVAVEAGLGAGGTFVAMNN--KVSQSVPHLHTHVVPRTK 105
                 678889999****************************************************9997777777765..678************976 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   2.3e-11   1.3e-07       2     101 ..       4     102 ..       3     110 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 2.3e-11
                 -HHHHHHTTSS-B-EEEE-SSEEEEE-SS-SSSEEEEEEESS---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T-EEEEE--SCCCT--S-S--EEEE CS
      DcpS_C   2 wvfnilakgkepervvyedekfvvlkDikpkaklhllvipkrdikslrdLtkehlpllkemrekakkvieekynevdaeelrvgvhyqPsvyhlHlHvi 100
                 +vf+ ++ g  p+  v ++ + v++ D +p  k hllv+p+ ++ sl dL + +lp    +++ +  ++e    +    ++ +  ++ +sv hlH Hv+
  KIR65182.1   4 CVFCGIVAGDVPAFRVADTPEGVAFLDTRPVFKGHLLVVPRTHLVSLADLPAGELPGYFGLVQRLAVAVEAGL-GAGGTFVAMNNKVSQSVPHLHTHVV 101
                 99*********99999999*************************************99999999999998877.56889*******************9 PP

                 E CS
      DcpS_C 101 s 101
                  
  KIR65182.1 102 P 102
                 6 PP

>> CwfJ_C_1  Protein similar to CwfJ C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00014      0.84      41     108 ..      31     102 ..      23     110 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00014
                 -S-SSTT-EEEEESS--SSTTSS-H....HHHHHHHHHHHHHHHHHHHTT--EEEEEE-SSS-----EEEEE CS
    CwfJ_C_1  41 kgpLssgHvliipieHisallslde....evldeirkfrkalvkmykkqdkdavvfEissersvHlaiqvip 108
                 + p  +gH+l++p  H+ +l  l++         +++   a+ +   + ++ + +   +s++ +Hl+ +v+p
  KIR65182.1  31 TRPVFKGHLLVVPRTHLVSLADLPAgelpGYFGLVQRLAVAVEAGLGAGGTFVAMNNKVSQSVPHLHTHVVP 102
                 578899************999998843333334455555555555555555555555558888888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1078.28
//
Query:       KIR65183.1  [L=380]
Description: cystathionine gamma-synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.5e-143  477.2   0.0   2.8e-143  477.1   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    1.5e-06   27.6   0.0    2.3e-06   27.1   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
    2.2e-06   27.2   0.0    3.5e-06   26.5   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
    4.5e-06   25.9   0.0    2.2e-05   23.6   0.0    1.8  2  Aminotran_5      Aminotransferase class-V
     0.0011   18.4   0.2     0.0015   17.9   0.2    1.3  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
      0.059   11.9   0.0       0.13   10.8   0.0    1.5  1  Met_gamma_lyase  Methionine gamma-lyase


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  477.1   0.0  9.4e-147  2.8e-143       1     381 [.       6     379 ..       6     380 .] 0.98

  Alignments for each domain:
  == domain 1  score: 477.1 bits;  conditional E-value: 9.4e-147
                      HHHHHHTTTTCHTTTTBSS--B---SBBBESSHHHHCTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEEE CS
  Cys_Met_Meta_PP   1 eTllvhagqekdeqtgavavpiyltstykfkdvdeafageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallkaGdei 94 
                      eTl++hagq+++ +tgav++piy+tsty ++    a +  ++gyeYsRsgnptr++l+e +aaLegg+ +la++sG+aA +a +++++k Gd++
       KIR65183.1   6 ETLAIHAGQDPEARTGAVIPPIYQTSTYAQD----AVGAPRQGYEYSRSGNPTRDALQECLAALEGGAIGLAFASGLAAEDALLRTVCKPGDHV 95 
                      69*****************************....66777788*************************************************** PP

                      EEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCT.TEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-GGGG CS
  Cys_Met_Meta_PP  95 vvsddlYggtqrllkkvlkklgievkfvdtsdleelekaike.ntklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqrplkl 187
                      v+ dd+Yggt+rl+ kv++++g+ ++   +sd++++++ai++  t++v+lEtptnpll ++Di+++a++a++ag+l+vvDntfasp+lq+p+++
       KIR65183.1  96 VIPDDAYGGTYRLFAKVAERWGLAYTPAKVSDVDAVRAAIRPgATRIVWLETPTNPLLGIADIAALAAVAHDAGALLVVDNTFASPYLQQPIAF 189
                      ******************************************99************************************************** PP

                      T-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-TTS CS
  Cys_Met_Meta_PP 188 gaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekhpkvekvyYpgl 281
                      gaD+vvhS+TKy+gGhsdvv+G++v+ +   l++el+++qna+Gav  pfdawl+lrG+kTL++R++rh  nA ++A +L+ h kv +v Ypgl
       KIR65183.1 190 GADVVVHSTTKYVGGHSDVVGGALVAAD-RTLGEELRYHQNAMGAVNGPFDAWLTLRGIKTLGVRMDRHCDNAERIAAYLDGHAKVAQVIYPGL 282
                      *************************999.99*************************************************************** PP

                      TTSTTHHHHHHHSSSG-SEEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHH CS
  Cys_Met_Meta_PP 282 pshpqhelakkqlkgaggvlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGiEdvdDlia 375
                      pshp+he+a kq++++gg++sF+  ++ee a +++++ klf laeslGgveslie+p  mthas   +  e   v  dl+RlsvGiE vdDl+a
       KIR65183.1 283 PSHPGHEVATKQMRRFGGMISFRAAGGEEYAVEICNRAKLFVLAESLGGVESLIEHPGRMTHASAAGSPLE---VPGDLVRLSVGIETVDDLLA 373
                      ***************************************************************99887665...5669**************** PP

                      HHHHHH CS
  Cys_Met_Meta_PP 376 Dlkqal 381
                      Dl+qal
       KIR65183.1 374 DLEQAL 379
                      *****8 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   7.6e-10   2.3e-06      38     198 ..      48     186 ..      33     214 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 7.6e-10
                    TST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHH..HTTSEEEEEEBEETTTTEE- CS
  Aminotran_1_2  38 neygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilr..lsggevvryplyseedfhld 131
                     ++g+++  ++l+e+la + g        +   + + sG  a +++l +++k  pgd +++pd  y+   + +   + +  + + p +       d
     KIR65183.1  48 SRSGNPT-RDALQECLAALEG-------GAI-GLAFASGLAAEDALLRTVCK--PGDHVVIPDDAYGGTYRLFAkvAERWGLAYTPAK-----VSD 127
                    5566666.8999999999999.......777.9*******999888888888..*********9887766655411222334555533.....77* PP

                    HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSS CS
  Aminotran_1_2 132 lealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl 198
                    ++a+ +a++        t+++++e+p NP   +a+ + l ++   a+  ++ll+vD ++a  +++++
     KIR65183.1 128 VDAVRAAIRPG-----ATRIVWLETPTNPLLGIADIAALAAV---AHDAGALLVVDNTFASPYLQQP 186
                    *********94.....579**********9888888888888...**************98888766 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.2e-09   3.5e-06      24     168 ..      44     176 ..      29     274 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.2e-09
                      --C.CCT--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSST.THHHHCC--EEEEE-EBTTTBE-HHHHH CS
  Beta_elim_lyase  24 Gde.sYgedktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtepahihfdet.gaiaelagvklrdlknkeaGkmdlekle 115
                      G e s  +++t  +L++ +a+l g + +l +++G aA+  ll++++++g+ v++ ++a + ++     +ae  g   +++k ++     +++++
       KIR65183.1  44 GYEySRSGNPTRDALQECLAALEGGAIGLAFASGLAAEDALLRTVCKPGDHVVIPDDAYGGTYRLfAKVAERWGLAYTPAKVSD-----VDAVR 132
                      555467789999**********************************************99999987777777888666666665.....***** PP

                      HHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEE CS
  Beta_elim_lyase 116 aaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDg 168
                      aai++ g     ++++ l++ +n      + ++ ++++aa+a++ g  l++D 
       KIR65183.1 133 AAIRP-G----ATRIVWLETPTNP----LLGIADIAALAAVAHDAGALLVVDN 176
                      *****.5....59**********5....999*******************995 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   7.5e-09   2.2e-05      81     204 ..      84     203 ..      71     224 .. 0.89
   2 ?   -0.3   0.0      0.14   4.1e+02     272     324 ..     263     314 ..     256     328 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 7.5e-09
                  CCCC.-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--.TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE- CS
  Aminotran_5  81 lars.lkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldeleklln.ektklvaithvsnvtGtiqpveeigklakkkgalvlvDa 176
                  l+r+  kpgd++v+ +  + ++    +++a+r g+  + +++      d+d+++++++   t++v +    n +  i ++++++++a+++gal++vD 
   KIR65183.1  84 LLRTvCKPGDHVVIPDDAYGGTYRLFAKVAERWGLAYTPAKV-----SDVDAVRAAIRpGATRIVWLETPTNPLLGIADIAALAAVAHDAGALLVVDN 176
                  4455699****************9******9*9998877777.....89********95689*****99999888899*******************9 PP

                  TTTTTTS---HHHHTESEEEEETTTTTS CS
  Aminotran_5 177 aqavghipidvkklgvDflafsghKllg 204
                  + a +  +  + ++g+D+++ s+ K++g
   KIR65183.1 177 TFASPYLQQPI-AFGADVVVHSTTKYVG 203
                  99988888777.69***********998 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.14
                  HHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHH CS
  Aminotran_5 272 gleaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnfkgvhaedv 324
                   ++a    +++ a+ ++ +l s pg +++  ++ +r  +++sf  +g +   v
   KIR65183.1 263 RIAAYLDGHAKVAQVIYPGLPSHPGHEVAT-KQMRRFGGMISFRAAGGEEYAV 314
                  5666677789999***************66.7999999*****9999887765 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   5.1e-07    0.0015      21     195 ..      49     225 ..      30     280 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.1e-07
                      S..SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTE CS
  DegT_DnrJ_EryC1  21 s..gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitert 112
                      +  +p+ +++ + +aa  g +  +a++sG aA   +Lr +  +pgd V++p   + +t    +++  + + +  +p+ +  d++a++aai +  
       KIR65183.1  49 RsgNPTRDALQECLAALEGGAIGLAFASGLAAEDALLRTV-CKPGDHVVIPDDAYGGTYRLFAKVA-ERWGLAYTPAKV-SDVDAVRAAIRPGA 139
                      34578899999*********************99999875.6899*************88777764.444445555554.4************* PP

                      EEEEEB-GGGB-....--HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS.-SSS..-EEEEESTHHHHHHHH CS
  DegT_DnrJ_EryC1 113 kaIlpVhlyGqv....admdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnl.ttGe..GGavvtndeelaekar 195
                        I++ ++  ++    ad++al a+a++ g  ++ D    + + y ++++   +d+ v S   tK +    +  GGa+v  d  l e++r
       KIR65183.1 140 TRIVWLETPTNPllgiADIAALAAVAHDAGALLVVDNT--FASPYLQQPIAFGADVVVHS--TTKYVgGHSDvvGGALVAADRTLGEELR 225
                      ****9999888533338*******************65..55677777777777777766..3444443333336777777766666665 PP

>> Met_gamma_lyase  Methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.3e-05      0.13      85     240 ..      69     217 ..      34     236 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.3e-05
  Met_gamma_lyase  85 aiatalfgvlrpgdellaitGkPydtleeviGlrgegqgslkdfgikyke..vdlleegkvdieavkeaik.ektkliliqrskGyserkslsi 175
                      ai++a+ + l  +d ll  + kP d    v+  ++   g+ + f    ++  +  + +   d++av++ai+   t+++ +       + + l i
       KIR65183.1  69 AIGLAFASGLAAEDALLRTVCKPGDH---VVIPDDAYGGTYRLFAKVAERwgLAYTPAKVSDVDAVRAAIRpGATRIVWLETP----TNPLLGI 155
                      67777777777777777777777774...333344455555555433332114445555567888888888557888888765....4688999 PP

  Met_gamma_lyase 176 eeieeiiklvkeinedvivfvdncyGefveekePtevGadliaGsliknpGGgiaktGGyiaGke 240
                      ++i+ + ++ ++     ++ vdn +      ++P++ Gad++  s  k +GG    +GG ++  +
       KIR65183.1 156 ADIAALAAVAHD--AGALLVVDNTFASPY-LQQPIAFGADVVVHSTTKYVGGHSDVVGGALVAAD 217
                      999987766554..4556779**998754.678********************999999876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 3164.00
//
Query:       KIR65184.1  [L=469]
Description: amidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-87  292.7   0.6    1.6e-86  291.1   0.6    1.8  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.1   0.6     9e-91   1.6e-86       2     451 .]      32     439 ..      31     439 .. 0.91

  Alignments for each domain:
  == domain 1  score: 291.1 bits;  conditional E-value: 9e-91
                 HHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE- CS
     Amidase   2 lveaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkTn 100
                 +v   l+ i++++ +l a+ tv   ea+++A+k+d++++    + pL+GvP++vK+n +v+g+pt +Gs a    +ae D +vv+rL+ aGavilg T 
  KIR65184.1  32 VVADHLDHIARADADLAAFRTVRGGEAITEAEKVDEQEE--LANLPLAGVPVAVKENTAVAGLPTWHGSAAVRSAVAEADHEVVRRLRGAGAVILGVTR 128
                 7788899******************************97..99******************************************************** PP

                 -SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSHHH CS
     Amidase 101 mdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsved 199
                 m+e+++++ t+  +   trNPwd++rtpGGSSGG AAavAaglvp+a+G+D+ GSiRiPA++cglvGlKP +g+v+++   +   +l  +G l+ +v d
  KIR65184.1 129 MPELGLWALTDD-ASAVTRNPWDPRRTPGGSSGGAAAAVAAGLVPMAHGNDGLGSIRIPAACCGLVGLKPGRGVVPCQLGADDWFGLTEHGMLTSTVAD 226
                 **********99.99******************************************************************999*************** PP

                 HHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGC..SS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHHHHHHHH CS
     Amidase 200 lalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedg..vasldpevqravekalkaLeeaGhevvevelpsleealslyylilvaea 296
                 +a+ ++v++g+ ++   ++v+              ++ lr+Gv    +   + +d++++ av++a + L +aGh  v++++ +++++  +  + ++a+a
  KIR65184.1 227 AAVGFQVLAGRPQE---KLVP--------------PQRLRVGVSLRSPvrGVAPDAPNRDAVAAAGRLLAAAGHDTVPADPVYPTRLGLAGIATWFAAA 308
                 *********99866...4442..............579******9999777889999****************************99998888888888 PP

                 HHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCC..BSEEEEESSSSS--BCCCCC CS
     Amidase 297 ssnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafee..lDvllsPtaptpaprlgekd 393
                 ++ ++                    +   ++ l++  +r++ lg+ a  +++    ++++++v    r++ +++f +  +D+ll+P+ + p+p+   ++
  KIR65184.1 309 AADVR-------------------AAGLDPRALQRRSRRHVALGEWAQRRGY----VRESDRVA--WRERSVGFFADhsVDLLLTPALAGPPPEAAGWS 382
                 86644...................3444456666666666677776666664....66655555..699*******999****************9998 PP

                 HHHCSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHHH CS
     Amidase 394 ktidsytvlynlldftavvvpvnlaglpalsvpagksedglPvGvqvigkafqeetlL 451
                       +++ +++ + ++++p+n+aglpa+ vp+g + dglPv+vq++g++++e  lL
  KIR65184.1 383 GR-SWAANMKASIRYAPFAAPWNIAGLPAIVVPVGRRPDGLPVAVQLVGPPGSELLLL 439
                 76.5899**********************************************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3416.33
//
Query:       KIR65185.1  [L=284]
Description: hypothetical protein TK50_06780 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-27   94.4  19.0    5.2e-27   94.4  19.0    2.1  3  DUF4328        Domain of unknown function (DUF4328)
  ------ inclusion threshold ------
      0.018   13.9   0.4       0.52    9.1   0.2    2.1  2  SSF            Sodium:solute symporter family
       0.31   11.1   3.6       0.13   12.3   1.1    1.5  2  DZR            Double zinc ribbon
       0.76    9.3   4.4        1.7    8.2   4.4    1.5  1  zf-ribbon_3    zinc-ribbon domain
        1.1    9.1   4.4        1.8    8.4   4.4    1.4  1  zinc_ribbon_2  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> DUF4328  Domain of unknown function (DUF4328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.3       1.7     6e+03     149     160 ..      44      55 ..      39      58 .. 0.47
   2 !   94.4  19.0   1.5e-30   5.2e-27       6     166 ..      78     242 ..      73     243 .. 0.91
   3 !    5.8   0.6    0.0026       9.1      22      64 ..     224     266 ..     213     268 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.7
     DUF4328 149 llaiaaavlall 160
                 ++a+a++++++l
  KIR65185.1  44 AAAVAVGAATVL 55 
                 344444444433 PP

  == domain 2  score: 94.4 bits;  conditional E-value: 1.5e-30
     DUF4328   6 deealrladalvelagllalllllaaavvflvWlrraranaealapgrhrrspgwavggwlvPvvnLvlPlqvvadlwrasapeaqaaadprparlsal 104
                 d++ + +a  +++l+gl + l++l+a+v++++W++rar n++a+ ++ +++ +gwa++gwlvP++nLv+P ++va + r s p+         + + al
  KIR65185.1  78 DRDLVMVAALAEVLLGLPYALAVLVAGVLVIIWTWRARTNLDAFPGALPSLGAGWAIAGWLVPLANLVVPARMVANVARDSLPR---------RTTPAL 167
                 6778889999*******************************************************************8888753.........34589* PP

     DUF4328 105 lgvWWaaWvlsllldavvvrlsladaadtlqeladsvals..............ivadllaiaaavlalllvrrit 166
                 +gvWWaaW++ ++ d++v+r   ++++++l+e  ++ + +              ++  +++++a+v +++l+r i+
  KIR65185.1 168 VGVWWAAWLAFTVGDILVARD-DSRRYERLTEWPRNDVEFgsyvryyqdtldtrLLLCAACLVAGVSFIVLLRWIS 242
                 *****************8886.488889999999999988999999999999999999999*********999886 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0026
     DUF4328  22 llalllllaaavvflvWlrraranaealapgrhrrspgwavgg 64 
                  +a l++ ++++v+l+W+ +a +   a+a+   + +pgw  gg
  KIR65185.1 224 CAACLVAGVSFIVLLRWISAAQQDRIARAAPAWPGHPGWSRGG 266
                 46678899999**********9998888888888888887776 PP

>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.2   0.00014      0.52     104     135 ..      80     111 ..      77     113 .. 0.94
   2 ?    2.7   0.0     0.013        46     144     167 ..     212     235 ..     207     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00014
         SSF 104 dlvggaklielalGlnyetavlllaaltalYt 135
                 dlv  a+l e +lGl y +avl+ ++l++++t
  KIR65185.1  80 DLVMVAALAEVLLGLPYALAVLVAGVLVIIWT 111
                 788899************************98 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.013
         SSF 144 vytdtiqavlmlvgalilliivll 167
                  y dt+ + l+l++a+++++++++
  KIR65185.1 212 YYQDTLDTRLLLCAACLVAGVSFI 235
                 699***************999986 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.1   3.6e-05      0.13       1      22 [.       3      24 ..       3      38 .. 0.86
   2 ?   -3.5   0.1       3.2   1.1e+04      31      34 ..     224     227 ..     217     228 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.6e-05
         DZR  1 CpqCgeelppdarfCseCgtkl 22
                C++Cg +++p++  C +Cgt+ 
  KIR65185.1  3 CQTCGDPTSPEDPDCRRCGTPF 24
                9999999999999999999985 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.2
         DZR  31 CpsC 34 
                 C +C
  KIR65185.1 224 CAAC 227
                 4444 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.4   0.00047       1.7       5      26 .]       3      24 ..       2      24 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00047
  zf-ribbon_3  5 CPnCGaplssddnvCpyCGtkl 26
                 C  CG p s++d+ C  CGt++
   KIR65185.1  3 CQTCGDPTSPEDPDCRRCGTPF 24
                 999****************985 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.4   0.00052       1.8       2      22 ..       3      23 ..       2      24 .. 0.96

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00052
  zinc_ribbon_2  2 CpnCGaelqdnakFCpyCGtp 22
                   C  CG + +++++ C +CGtp
     KIR65185.1  3 CQTCGDPTSPEDPDCRRCGTP 23
                   999*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2060.25
//
Query:       KIR65186.1  [L=406]
Description: threonine dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-86  288.1   9.5    1.3e-85  287.4   9.5    1.3  1  PALP      Pyridoxal-phosphate dependent enzyme
    9.5e-06   25.3   0.4    2.6e-05   23.9   0.1    1.9  2  ACT       ACT domain
    2.1e-05   25.0   0.0    4.7e-05   23.9   0.0    1.5  1  ACT_4     ACT domain
    2.1e-05   24.4   0.0    5.7e-05   23.0   0.0    1.8  1  ACT_6     ACT domain
     0.0065   16.4   0.1      0.048   13.7   0.0    2.3  2  DUF2103   Predicted metal-binding protein (DUF2103)


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.4   9.5   3.7e-89   1.3e-85       3     294 .]      19     305 ..      17     305 .. 0.98

  Alignments for each domain:
  == domain 1  score: 287.4 bits;  conditional E-value: 3.7e-89
                 GCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT CS
        PALP   3 lgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllG 101
                 ++ + TPl +++ ls++lg+p++lK+E+ +  gS+K+Rga+ +++rl  +++ ++vv+as+GNh++++A+aa l G  +t+++p +a+  kva+++ +G
  KIR65186.1  19 GVTRTTPLEPSRPLSAALGGPVWLKCENVQRAGSYKVRGAYVRISRLSAAERDRGVVAASAGNHAQGVALAAGLVGTHATVFMPVNAPLPKVAATKGYG 117
                 67789*****************************************888889*********************************************** PP

                 -EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTT CS
        PALP 102 aevvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalar 200
                 a+v++ g+++de++ aa+++a++ +ga+l+++fd+p+vi+g+gt++lEileq+ +++ ++v +vGgGgli+G+a + k+ rpdvr++gv+++g++a+  
  KIR65186.1 118 AQVELMGNTVDESLVAAQTFAER-TGAILIHPFDHPDVIAGQGTVALEILEQC-PDVRTIVTGVGGGGLISGMAVAAKALRPDVRLVGVQAAGAAAYPP 214
                 ***********************.*****************************.6******************************************** PP

                 CCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTCEEEEEEE-B CS
        PALP 201 slragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkegdrvvviltg 294
                 sl+ag++v++p  +tiadg+avg+p+e +f ++++lvdeivtvs+e++ +a+  l +r + vvep++a+++aal    ag l+ + +vv++l+g
  KIR65186.1 215 SLAAGEPVRLPAFSTIADGIAVGRPGEITFNHVRKLVDEIVTVSEEDISRALLMLLERGKQVVEPAGAVGVAAL---LAGVLEVETPVVAVLSG 305
                 **************************************************************************...9999999999*****98 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.6   5.8e+03      40      58 ..     247     265 ..     233     266 .. 0.63
   2 !   23.9   0.1   7.3e-09   2.6e-05       3      61 ..     330     392 ..     327     396 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
                 ECEEEEEEEEEEHHHHHHH CS
         ACT  40 vagivfvvivvdeedleev 58 
                 v ++v+ +++v+eed++ +
  KIR65186.1 247 VRKLVDEIVTVSEEDISRA 265
                 5567777777888887766 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 7.3e-09
                 EEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTT....ECEEEEEEEEEEHHHHHHHHHH CS
         ACT   3 lrvgvpDrPGlLarvfgaladrgiNidsieqrssedk....vagivfvvivvdeedleevlea 61 
                 + v++ DrPG La ++  +a++  N++ +e+ +  ++     ++ + +v++ + e+ ++++ a
  KIR65186.1 330 VTVRCSDRPGQLASLLHEIAEHRANVVDVEHQRANPHlrlgEVEVALSVETRGVEHSDTLISA 392
                 6799******************************99995555555555555555555555555 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.3e-08   4.7e-05       8      71 ..     329     395 ..     326     398 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.3e-08
       ACT_4   8 rleveaedrkglLaditqviseekanivsvnaktrkk...dglaeikitveVkdvehLsrviakLra 71 
                 r++v ++dr+g La+++  i+e++an+v+v+ +  +     g +e+ ++ve + veh +++i +Lra
  KIR65186.1 329 RVTVRCSDRPGQLASLLHEIAEHRANVVDVEHQRANPhlrLGEVEVALSVETRGVEHSDTLISALRA 395
                 68899**************************999766788889**********************97 PP

>> ACT_6  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.6e-08   5.7e-05       3      45 ..     328     370 ..     326     400 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.6e-08
       ACT_6   3 llitvtGpdrpGltasLtsvlaefgvnilDieqavihgrlsLg 45 
                 l +tv  +drpG++asL++ +ae+++n++D+e  +   +l Lg
  KIR65186.1 328 LRVTVRCSDRPGQLASLLHEIAEHRANVVDVEHQRANPHLRLG 370
                 6689999*************************99999999887 PP

>> DUF2103  Predicted metal-binding protein (DUF2103)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.3e-05     0.048       9      60 ..     150     199 ..     148     204 .. 0.91
   2 ?   -1.1   0.0      0.54     2e+03      40      69 ..     317     346 ..     315     358 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
     DUF2103   9 sHstiiggreGkkllekiakhpevkkviPgvikakgsssggglrvkvtrade 60 
                 +H  +i g+ G+ +le + ++p+v++++ gv   +g  sg+ +++k++r+d 
  KIR65186.1 150 DHPDVIAGQ-GTVALEILEQCPDVRTIVTGVG-GGGLISGMAVAAKALRPDV 199
                 578889998.********************86.7889************996 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.54
     DUF2103  40 ikakgsssggglrvkvtraderGnlrlllr 69 
                 i+ + +++g+ lrv+v  +d+ G l  ll+
  KIR65186.1 317 IEHGLAAAGRYLRVTVRCSDRPGQLASLLH 346
                 666667888999999999999998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3028.27
//
Query:       KIR65187.1  [L=166]
Description: transcription elongation factor GreA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.1e-22   77.8   2.7    6.4e-22   77.5   2.7    1.1  1  GreA_GreB_N  Transcription elongation factor, N-terminal
    5.5e-18   64.7   0.1    7.8e-18   64.2   0.1    1.2  1  GreA_GreB    Transcription elongation factor, GreA/GreB, C-te


Domain annotation for each model (and alignments):
>> GreA_GreB_N  Transcription elongation factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   2.7   7.1e-26   6.4e-22       2      71 .]      12      80 ..      11      80 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 7.1e-26
                 EE-HHHHHHHHHHHHHHHHXHHHHHHHHHHHHHHHSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHTEEE CS
  GreA_GreB_N  2 ylTkegyekleeeLeelktverpeiaeaikeareeGDlsENaeYdaAkeeqaeiearIreLedkLanaev 71
                 +l+++++++l++eL+el    rp ia++i++ reeGDl+EN +Y+aA+eeq++ e+rI +L++ L++a+v
   KIR65187.1 12 WLSQDAHDRLQAELDELIA-NRPVIAAEINARREEGDLRENGGYHAAREEQGKQEGRILYLKELLRTAKV 80
                 899****************.************************************************98 PP

>> GreA_GreB  Transcription elongation factor, GreA/GreB, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.1   8.7e-22   7.8e-18       2      76 ..      85     162 ..      83     163 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 8.7e-22
                 ..SS--TT-EEEEE-.SS--EEEE----TTT-BS-SS..B--TTSHHHHHHTT--TT-EE---BTTB.---EEEEEEX CS
   GreA_GreB   2 pkdvVtfGstVtledldtgeeetytiVgpdeadpskg..kiSveSPlGkaLlgkkvGdevevkapsg.kikveIlkie 76 
                 ++d+V++G++Vt++  d++++++++++g++e++ ++   ++S+eS lGk++lg + G++v+++apsg +ikv++++ e
  KIR65187.1  85 SADTVSPGMVVTIYFDDDTDDTETFLLGSREISSTTEltVYSPESALGKSILGSRPGQTVTYTAPSGaDIKVTVVSFE 162
                 469******************************988778************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1330.23
//
Query:       KIR65188.1  [L=144]
Description: hypothetical protein TK50_06795 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-27   96.0   2.0    1.3e-27   95.8   2.0    1.1  1  DUF4307   Domain of unknown function (DUF4307)
  ------ inclusion threshold ------
      0.083   13.1   0.0       0.12   12.6   0.0    1.2  1  Pox_A14   Poxvirus virion envelope protein A14


Domain annotation for each model (and alignments):
>> DUF4307  Domain of unknown function (DUF4307)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   2.0   1.5e-31   1.3e-27       1     110 []      29     140 ..      29     140 .. 0.96

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 1.5e-31
     DUF4307   1 srrllvillvvlvvvalalvawigysq.gsadvsaevvgfevvddstvevtfeVtrddgspavCiVrAldedgaevGrrevlvpag.dertvrvtvtvr 97 
                 +r+ lv+ll+ ++v+ l+l+a+ +y + g+++++a+v+++++++ds+v v+f+Vt ++g +a+C++rA+++dgaev r+ev+v a  +e++   ++++ 
  KIR65188.1  29 RRPALVALLATALVATLGLAAFSMYGKyGDPTYDAQVITYTDITDSQVVVDFRVTVPAGGSATCVLRARSHDGAEVAREEVTVAAPpGESQAAARHRLA 127
                 578999*****************************************************************************95448999999***** PP

     DUF4307  98 TtaravtgevygC 110
                 Ttar+++gev++C
  KIR65188.1 128 TTARPFIGEVVRC 140
                 ************* PP

>> Pox_A14  Poxvirus virion envelope protein A14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.3e-05      0.12      53      89 ..      38      75 ..      25      79 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
     Pox_A14 53 ilgivillglllfsmygrkCkat.sskvveearynsse 89
                 +++v++lgl  fsmyg++  +t   +v++++ + +s+
  KIR65188.1 38 ATALVATLGLAAFSMYGKYGDPTyDAQVITYTDITDSQ 75
                5789*****************99888888887776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1082.83
//
Query:       KIR65189.1  [L=293]
Description: GlcNAc-PI de-N-acetylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-27   94.4   0.0    1.1e-26   94.0   0.0    1.2  1  PIG-L     GlcNAc-PI de-N-acetylase


Domain annotation for each model (and alignments):
>> PIG-L  GlcNAc-PI de-N-acetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.0   6.1e-31   1.1e-26       1     131 []       8     154 ..       8     154 .. 0.95

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 6.1e-31
                 EEEESSTTHHHHHHHHHHHHHHHTT-EEEEEECE--TT---STTTTHH....-HHHHHHHHHHHHHHHHCTE..EEEEECCCBTT-STT.......... CS
       PIG-L   1 llvlAHpDDellfaggtiaklvaagvevkivcltaGdagsplatleek....eelaeiRekEaraaakhlgvadedvffldfpDgsles.......... 85 
                 ++v+AHpDDe+   ++t+ak+va+gv+v +v++t G+ gs l    ++    +++aeiR++E +aa ++lgv   +  +l+f D++l +          
  KIR65189.1   8 MAVHAHPDDESSKGAATMAKYVAEGVDVLVVTCTGGERGSVLNPKMDRpdvwANIAEIRRAEMDAARAILGV---EQAWLGFVDSGLPEgdplpplpeg 103
                 79*************************************8888888779***********************...9999*********99********* PP

                 ....S-CHHHHHHHHHHHHHH--SEEEEE-TTTT.H-HHHHHHHHHHHHH. CS
       PIG-L  86 ....ydedellddlaklieryrPdvvltldpegd.dhpDHtavasaavaal 131
                      d + ++  l++li+++rP+v+ t+d+eg+ +hpDH +++++++aa+
  KIR65189.1 104 cfalQDVEVAAGPLVRLIRQFRPHVITTYDEEGGyPHPDHIMTHKITMAAF 154
                 *998888888999***********************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2353.34
//
Query:       KIR65190.1  [L=113]
Description: hypothetical protein TK50_06805 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 851.29
//
Query:       KIR65191.1  [L=172]
Description: hypothetical protein TK50_06815 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       183  (0.0102069); expected 358.6 (0.02)
Passed bias filter:                      139  (0.0077528); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1274.32
//
Query:       KIR65192.1  [L=110]
Description: cation tolerance protein CutA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-19   69.2   0.0    2.4e-19   69.0   0.0    1.0  1  CutA1     CutA1 divalent ion tolerance protein


Domain annotation for each model (and alignments):
>> CutA1  CutA1 divalent ion tolerance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   1.4e-23   2.4e-19       3      98 ..      11     106 ..       9     107 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 1.4e-23
                 EEEEESSHHHHHHHHHHHHHTTS-SEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHSSSSS-EEEEEEESEEEHHHHHHHHH CS
       CutA1   3 vlvtapseeeakklaralveeklaACvnilpkieSvYrWkgkieedkEvllliktreekveelekrvkelhpyevpeiialpieagseaYlkWiee 98 
                 v + ++s+++   la+  v+ +laA ++++ +++Sv++ +g+    +E+++l+ t++++++ele+++ + h+++ p+++a+pi++gs++Yl+W+++
  KIR65192.1  11 VATATDSRDSGVLLAEGAVAGRLAAGAQVVGPVTSVFWHHGERGIGEEWQILFFTTAARYPELERYLLDEHSWSNPQVTAVPIVRGSTDYLAWVAR 106
                 6788999999***********************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 869.98
//
Query:       KIR65193.1  [L=405]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-12   46.3   3.6    3.9e-12   46.3   3.6    3.6  3  HTH_31    Helix-turn-helix domain
    4.5e-06   26.6   0.1    9.2e-06   25.6   0.1    1.5  1  HTH_3     Helix-turn-helix
    4.6e-05   23.4   0.0    9.4e-05   22.4   0.0    1.5  1  HTH_19    Helix-turn-helix domain
     0.0012   18.6   0.2     0.0025   17.6   0.2    1.5  1  HTH_25    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.017   15.2   7.9        2.9    8.2   0.3    4.6  5  TPR_2     Tetratricopeptide repeat
      0.073   13.6   0.6      0.073   13.6   0.6    3.4  3  TPR_19    Tetratricopeptide repeat
       0.08   13.0   1.7          3    8.1   0.2    3.5  3  TPR_7     Tetratricopeptide repeat
        6.6    7.6   6.3    2.1e+02    2.9   0.4    4.7  6  TPR_6     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   3.6   1.7e-15   3.9e-12       2      62 ..       6      65 ..       5      67 .. 0.95
   2 ?   -1.5   2.3       1.5   3.3e+03      12      39 ..      70      97 ..      69     125 .. 0.53
   3 ?   -3.5   0.1       6.1   1.4e+04      19      27 ..     159     167 ..     157     168 .. 0.73

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 1.7e-15
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaera 62
                ++a+Lr+lR ++GLs++ +A+++   +s+l+ lE+G+   psp+v ++l +al++ ++++a
  KIR65193.1  6 FAARLRQLRHERGLSLRGLAKLTYHGKSYLHELETGAK-APSPQVARRLDDALRAMGELVA 65
                89************************************.5***************999987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.5
      HTH_31 12 raGLsqeevAerlgvsestlsrlEq.Grr 39
                r GL+++e+  ++g+ ++  + l + Grr
  KIR65193.1 70 RPGLRRREL-VAAGLAAALPHSLLThGRR 97
                778888888.5666666666666664333 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 6.1
      HTH_31  19 evAerlgvs 27 
                 e A+++g+s
  KIR65193.1 159 EQAQLAGWS 167
                 558899998 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   4.1e-09   9.2e-06       1      48 [.      10      57 ..      10      59 .. 0.96

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 4.1e-09
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaL 48
                l++lR ++gls++ LA+++   +s++  +E G  +Ps++++ +l +aL
  KIR65193.1 10 LRQLRHERGLSLRGLAKLTYHGKSYLHELETGAKAPSPQVARRLDDAL 57
                89******************************999*********9998 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   4.2e-08   9.4e-05       2      49 ..       8      57 ..       7      64 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 4.2e-08
      HTH_19  2 erLkeaReelgltqeelaerlgisrskisaiEngkkdvps...aelllkia 49
                 rL+++R e+gl+++ la+ + + +s+++++E+g k  ps   a++l +++
  KIR65193.1  8 ARLRQLRHERGLSLRGLAKLTYHGKSYLHELETGAK-APSpqvARRLDDAL 57
                69********************************77.78855555555555 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   1.1e-06    0.0025       1      35 [.       9      43 ..       9      68 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHCT-- CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEeddf 35
                rLr+ R +rglsl+ +ak t   k+yl++lE +  
  KIR65193.1  9 RLRQLRHERGLSLRGLAKLTYHGKSYLHELETGAK 43
                7******************************9953 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       0.5   1.1e+03      15      31 ..      51      67 ..      49      69 .. 0.85
   2 ?    8.2   0.3    0.0013       2.9       7      29 ..     164     186 ..     158     190 .. 0.87
   3 ?   -2.5   0.1       3.4   7.7e+03       2      16 ..     237     251 ..     236     251 .. 0.78
   4 ?   -0.2   0.0      0.66   1.5e+03       8      29 ..     291     312 ..     288     316 .. 0.87
   5 ?    5.0   1.8     0.013        30       1      29 [.     323     351 ..     323     355 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.5
       TPR_2 15 gdyeeAleafekAleld 31
                 ++++Al+a+ + ++l+
  KIR65193.1 51 RRLDDALRAMGELVALA 67
                6899******9999986 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0013
       TPR_2   7 lGlayyklgdyeeAleafekAle 29 
                  G++++ +g++++A+++++ +l+
  KIR65193.1 164 AGWSAFDAGRHDDAERLYRLSLS 186
                 69****************98876 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.4
       TPR_2   2 ealynlGlayyklgd 16 
                  ++ + ++a++  gd
  KIR65193.1 237 LLHLRAAWAHALTGD 251
                 678889999988886 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.66
       TPR_2   8 GlayyklgdyeeAleafekAle 29 
                 G++++ l ++ +A+  +e+A+ 
  KIR65193.1 291 GRCWAVLHRPVRAVPVLERAIL 312
                 8899999999**********85 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.013
       TPR_2   1 aealynlGlayyklgdyeeAleafekAle 29 
                 a +l +l++ay+ +++ e+A +    A +
  KIR65193.1 323 ALYLSWLADAYLDANEVEQACATAALAAR 351
                 6789****************876666655 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       2.3   5.2e+03       6      28 ..      52      74 ..      50      81 .. 0.70
   2 ?    2.4   4.5     0.099   2.2e+02       1      38 [.     168     208 ..     168     239 .. 0.72
   3 ?   13.6   0.6   3.2e-05     0.073       7      49 ..     300     347 ..     298     360 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.3
      TPR_19  6 dyaeAlalleqalqedpknaear 28
                ++++Al+++ ++ + +   + +r
  KIR65193.1 52 RLDDALRAMGELVALAGTRPGLR 74
                67888888877776666666555 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.099
      TPR_19   1 llaegdyaeAlalleqalqe..dpknaearl.lLAeallal 38 
                 ++++g++++A +l++  l++  d+++a+++  +LA + +++
  KIR65193.1 168 AFDAGRHDDAERLYRLSLSAahDAHDAALAGnGLAFLAYQQ 208
                 5899******8888887754347777777766666665554 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 3.2e-05
      TPR_19   7 yaeAlalleqal....qedpknaearl.lLAeallalgqldeAealLd 49 
                 + +A++ le+a+    + ++ + ++ l +LA+a+l ++++++A a+ +
  KIR65193.1 300 PVRAVPVLERAIlrfdDTYARDKALYLsWLADAYLDANEVEQACATAA 347
                 6789999999974554447778888889***************77655 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2    0.0013         3      10      31 ..     169     190 ..     162     195 .. 0.78
   2 ?   -2.4   0.0       2.9   6.6e+03      17      26 ..     302     311 ..     300     317 .. 0.76
   3 ?    1.8   0.1      0.14   3.1e+02       5      19 ..     329     343 ..     326     358 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0013
       TPR_7  10 srlGdyeeAielyeqsLaltkd 31 
                 ++ G++++A++ly+ sL  + d
  KIR65193.1 169 FDAGRHDDAERLYRLSLSAAHD 190
                 678**************55555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.9
       TPR_7  17 eAielyeqsL 26 
                 +A+ ++e+++
  KIR65193.1 302 RAVPVLERAI 311
                 7999999944 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.14
       TPR_7   5 LarlysrlGdyeeAi 19 
                 La++y + ++ e+A 
  KIR65193.1 329 LADAYLDANEVEQAC 343
                 9************96 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.1   2.5e+03      14      27 ..      51      64 ..      29      66 .. 0.66
   2 ?    2.7   0.1       0.1   2.3e+02       6      24 ..     164     182 ..     162     184 .. 0.90
   3 ?   -2.7   0.1       5.5   1.2e+04      10      15 ..     206     217 ..     201     225 .. 0.45
   4 ?   -2.5   0.0         5   1.1e+04       4      15 ..     240     251 ..     239     253 .. 0.80
   5 ?   -1.0   0.0       1.6   3.6e+03      15      32 ..     299     316 ..     289     317 .. 0.73
   6 ?    2.9   0.4     0.093   2.1e+02       5      23 ..     328     346 ..     326     351 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.1
                HHHHHHHHHHHHHH CS
       TPR_6 14 gdtdkAlealerli 27
                 + d+Al+a+ +l+
  KIR65193.1 51 RRLDDALRAMGELV 64
                68899999999887 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAleale 24 
                 +++s + +g++d+A ++++
  KIR65193.1 164 AGWSAFDAGRHDDAERLYR 182
                 69*****99*****99997 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.5
                 HHHH......HH CS
       TPR_6  10 yrkl......gd 15 
                 y++l      +d
  KIR65193.1 206 YQQLaltgqaTD 217
                 333234432233 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 5
                 HHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgd 15 
                 +++a+++  +gd
  KIR65193.1 240 LRAAWAHALTGD 251
                 799***998665 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHH-TT CS
       TPR_6  15 dtdkAlealerlikeYPd 32 
                 ++ +A+  ler i ++ d
  KIR65193.1 299 RPVRAVPVLERAILRFDD 316
                 66689999****999977 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.093
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAleal 23 
                 +la +y+ +++ ++A+++ 
  KIR65193.1 328 WLADAYLDANEVEQACATA 346
                 79******99*****9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2625.83
//
Query:       KIR65194.1  [L=684]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-70  235.5   0.0      4e-70  235.0   0.0    1.3  1  Thioredox_DsbH   Protein of unknown function, DUF255
      2e-09   37.5   0.1    4.2e-09   36.4   0.1    1.6  1  Thioredoxin_7    Thioredoxin-like
    2.4e-06   27.0   5.1      0.025   13.9   0.1    3.3  3  GlcNAc_2-epim    N-acylglucosamine 2-epimerase (GlcNAc 2-epim
     0.0087   14.6   0.0       0.06   11.8   0.0    2.1  2  Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
  ------ inclusion threshold ------
      0.062   12.8   0.1       0.32   10.4   0.0    2.0  3  Glyco_hydro_76   Glycosyl hydrolase family 76


Domain annotation for each model (and alignments):
>> Thioredox_DsbH  Protein of unknown function, DUF255
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.0   0.0   1.1e-73     4e-70       2     162 ..       2     156 ..       1     157 [. 0.98

  Alignments for each domain:
  == domain 1  score: 235.0 bits;  conditional E-value: 1.1e-73
  Thioredox_DsbH   2 nrlaeekspYllqhaknpvdWypwgeealekakeedkpillsiGysachWChvmekesfedeevaallnesfvsvkvDreerPdldkiymeavqa 96 
                     nrla+++spYllqha+npvdW+pw++ea+++ak++d p+l+s+Gy+achWChvm++esfede+v +lln+ fv++kvDreerPd+d++ym+a+qa
      KIR65194.1   2 NRLASATSPYLLQHADNPVDWWPWCDEAFAEAKRRDVPVLVSVGYAACHWCHVMAHESFEDEAVGKLLNDGFVAIKVDREERPDVDAVYMTATQA 96 
                     9********************************************************************************************** PP

  Thioredox_DsbH  97 ltgsggWPlnvfltpdlkpffggtYfpkeeregrpgflevlekiaelweeereeleeeaeelleal 162
                     +tg+ggWP++vf tpd++pff+gtYfpk      p+f+++le++ ++w+e+re++ ++ ++++ea+
      KIR65194.1  97 MTGQGGWPMTVFATPDGTPFFCGTYFPK------PNFVRLLESVGTAWREQREAVLQQGSAVVEAI 156
                     ***************************9......79**********************99998875 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1   1.2e-12   4.2e-09       1      80 [.      21     108 ..      21     111 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.2e-12
                    ---SSHHHHHHHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.......-TT-....--.SSEEEE CS
  Thioredoxin_7   1 ewlsdldealakaaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdani......lelde....qg.vPvvaf 80 
                    +w  + dea+a+a++r  pvlv +g + c+ C++++ +  +de v ++l++ fv  +vd +er +            +    qg  P+ +f
     KIR65194.1  21 DWWPWCDEAFAEAKRRDVPVLVSVGYAACHWCHVMAHESFEDEAVGKLLNDGFVAIKVDREERPDVDavymtaT---QamtgQGgWPMTVF 108
                    6899*******************************9999999999999************99877333333331...13333334777666 PP

>> GlcNAc_2-epim  N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   6.9e-06     0.025      35     125 ..     213     307 ..     208     317 .. 0.85
   2 !   11.7   0.0     3e-05      0.11     145     177 ..     490     522 ..     488     530 .. 0.92
   3 ?    1.8   0.3     0.033   1.2e+02     280     314 ..     555     590 ..     524     596 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.9e-06
                    HTT-TTHHHHHHHHHHHTTTT.TB-TTTSSB-SEEETTEEEE-..-EEHHHHHHHHHHHHH.HHTTT-TTHHHHHHHHHHHHHHHTEETTTTEE- CS
  GlcNAc_2-epim  35 qlgrpgwldlvehGlkflekv.lrdaehggyfsalrdggvlda..skdaYdhaFvllalas.alaageeeakdlldetlavlekhlweekaglvk 125
                    + g  + l++++h ++++++   +d+  gg+++   dg+   +  +k +Yd a  l  + +    +g++ a++++++t ++l  +l  + +g++ 
     KIR65194.1 213 RTGSAESLEIARHTAEAMARGgIHDQLAGGFARYSVDGHWTVPhfEKMLYDNALLLRVYTHlWRLTGDPLARRVARDTARFLADELHRPGEGFAS 307
                    3788999***********875168**********999996655125789************7789********************9999998864 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3e-05
                    HHHHHHHHHTT-BTHHHHHHHHHHHHHTTTTGG CS
  GlcNAc_2-epim 145 leAmLalaeatgdkeyleraeeiaelvisefad 177
                     eA+ a+ ++tg+ ++le+a +++++++++fa+
     KIR65194.1 490 AEAFCAMHQLTGEGRWLELAGNLLDTALARFAA 522
                    69***************************9986 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.033
                    HHHHHHHHHHH.H--CHHHHHHHHHHHHHHHHTB-T CS
  GlcNAc_2-epim 280 alkaaaalael.tgearylewyarvaeylerhlidp 314
                    al+aa++ ++  +geary e +++++++++  ++ +
     KIR65194.1 555 ALAAALVTYAAlSGEARYREAAEAALATVAPIVARH 590
                    566665555555999999999999988887666555 PP

>> Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.074   2.7e+02     111     162 ..     246     299 ..     127     323 .. 0.71
   2 !   11.8   0.0   1.7e-05      0.06     177     265 ..     486     582 ..     477     603 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.074
                      SEETTEESH.-.---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHC CS
  Glyco_hydro_127 111 eakkeawap.d.shelYnlgkliegavayyqatgkeklldvatrladyleevle 162
                       + ++ w+  + + +lY    l+    + +++tg+  + +va + a++l++ l+
       KIR65194.1 246 YSVDGHWTVpHfEKMLYDNALLLRVYTHLWRLTGDPLARRVARDTARFLADELH 299
                      345556655333555666666666667777777777777777777777755555 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 1.7e-05
                      HCTHHHHHHHHHHHHT-CHHHHHHHHCCHHCCHCC..........T-HCTTT-SSTCGCHHCHHCCHHHHHHHHHHHHHHHHHCTTHCCHHHHH CS
  Glyco_hydro_127 177 hggieealvklyelTgdkrYldlAkrfidergldp..........eklaykqdelpvrhqntaigkavRatylysgladvyeetgddkllkaae 260
                       g + ea+  +++lTg+ r+l+lA ++ d+++               +a++    p    ++a++       l++ l ++++++g+ ++++aae
       KIR65194.1 486 YGCVAEAFCAMHQLTGEGRWLELAGNLLDTALARFaapgggfydtADDAEQLVARPADPHDNATPSGR--SALAAALVTYAALSGEARYREAAE 577
                      456779***********************999888777877765422333333333333344444433..458999999999999999999888 PP

                      HHHHH CS
  Glyco_hydro_127 261 rlwdn 265
                          +
       KIR65194.1 578 AALAT 582
                      65554 PP

>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       2.3   8.4e+03      34      60 ..     260     286 ..     245     307 .. 0.73
   2 ?   10.4   0.0     9e-05      0.32     221     264 ..     486     529 ..     484     538 .. 0.87
   3 ?   -1.4   0.0      0.36   1.3e+03      39      65 ..     554     580 ..     542     588 .. 0.68

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 2.3
                     GHHHHHHHHHHHHHHHHHCTTCCCHHH CS
  Glyco_hydro_76  34 ywWeagalfgalidywrltgdstyndl 60 
                     + + ++ l+      wrltgd+  +++
      KIR65194.1 260 MLYDNALLLRVYTHLWRLTGDPLARRV 286
                     467788888888888888888765555 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 9e-05
                     HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCEECTTEEEE CS
  Glyco_hydro_76 221 qGtylsgaaylynaTgdekWldrvkgllnatlstffpdgnilye 264
                     +G++ ++ + ++++Tg+ +Wl+ + +ll+++l+ f   g+  y+
      KIR65194.1 486 YGCVAEAFCAMHQLTGEGRWLELAGNLLDTALARFAAPGGGFYD 529
                     89*****************************9999877555555 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.36
                     HHHHHHHHHHHHHCTTCCCHHHHHHHH CS
  Glyco_hydro_76  39 galfgalidywrltgdstyndlitqal 65 
                     +al+ al+ y  l+g+++y++  + al
      KIR65194.1 554 SALAAALVTYAALSGEARYREAAEAAL 580
                     455666666666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4649.85
//
Query:       KIR65195.1  [L=387]
Description: phosphoribosylaminoimidazole carboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-47  158.8   0.0    1.3e-46  158.4   0.0    1.2  1  ATP-grasp        ATP-grasp domain
    2.7e-17   62.2   0.0    6.1e-17   61.1   0.0    1.6  1  PurK_C           Phosphoribosylaminoimidazole carboxylase C-t
    6.1e-07   29.1   0.0    1.4e-06   28.0   0.0    1.6  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
     0.0033   17.2   0.0     0.0053   16.5   0.0    1.3  1  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
  ------ inclusion threshold ------
      0.021   15.0   1.0      0.021   15.0   1.0    2.8  3  PRODH            Proline utilization A proline dehydrogenase 
      0.022   14.9   0.1       0.11   12.7   0.1    2.2  2  LAL_C2           L-amino acid ligase C-terminal domain 2
      0.034   14.4   0.1       0.24   11.7   0.1    2.1  2  TPR_5            Tetratrico peptide repeat
       0.04   13.8   0.5      0.074   12.9   0.5    1.4  1  NAD_binding_10   NAD(P)H-binding
      0.095   12.2   0.0       0.84    9.1   0.0    2.0  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus


Domain annotation for each model (and alignments):
>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.4   0.0   6.3e-50   1.3e-46       3     171 .]     116     286 ..     114     286 .. 0.94

  Alignments for each domain:
  == domain 1  score: 158.4 bits;  conditional E-value: 6.3e-50
                 TTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC..GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEEEE CS
   ATP-grasp   3 klglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal..keekvivEefvpfekElsvlvvrsaeGetafypvvetv 99 
                 +lg p p +  v++ ++l ++ ++ g pvv+Ka+r+gydG+G ++v +++++ +++++l  +++++ivEe+v +++El+v v+rs  G++a+ypvvetv
  KIR65195.1 116 ELGAPNPAWRPVAEPADLVAFGDAQGWPVVLKAARGGYDGRGVWLVDDAAQAAELATTLlaGGTRLIVEERVALRRELAVQVARSPFGQVAAYPVVETV 214
                 789999*************************************************99999999************************************ PP

                 EETTEEEEEEECEE.-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS--GGGGGHHHHB CS
   ATP-grasp 100 qedgilrlsvapae.vsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapRpHnsGhvtldaa 171
                 q  gi+++++apa+ ++e+ +  a+++a +++ +Lg+vG++avElF++  g l+vnEla+RpHnsGh+t+++a
  KIR65195.1 215 QVGGICVEVLAPAPgLPEELAVAAQQLAIDLATALGVVGLLAVELFETPAG-LVVNELAMRPHNSGHWTIEGA 286
                 *************8355666777788888*******************555.******************985 PP

>> PurK_C  Phosphoribosylaminoimidazole carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0     3e-20   6.1e-17       2      56 .]     314     373 ..     313     373 .. 0.87

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 3e-20
      PurK_C   2 vMvNlLGedae.....eklee....llaipgahlHlYgKeearpgRKmGHitvvgdsaeeleer 56 
                 vM N+LG ++      e   +     +a pga++HlYgK+ +rpgRK+GH+tv+gd+ +++++r
  KIR65195.1 314 VMANVLGGQPGgisidE---RlhhlFAAEPGAKVHLYGKQ-VRPGRKIGHVTVLGDDLADVRAR 373
                 8*********9876653...144578889***********.*******************9986 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   6.8e-10   1.4e-06       1     162 [.     106     259 ..     106     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 6.8e-10
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCC.TTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafgl.GGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEv 97 
                  Dk+ ++e l ++++p     +  v +  + +a+ +  g+Pv++kaa g+  G+G  ++++ ++ ael+++ la         ++ ve+ ++  +e+ v
   KIR65195.1 106 DKQVMRERLGELGAPNPAWRP--VAEPADLVAFGDAQGWPVVLKAARGGyDGRGVWLVDDAAQAAELATTLLAGG------TRLIVEERVALRRELAV 195
                  666666777777766554444..4888999****************87538**********99999987766655......89*************** PP

                  EEEEETTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEE CS
  CPSase_L_D2  98 evlrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtvef 162
                  +v r   g v      e + q+    v + AP++ L +e   a ++ a+ ++ ++gvvg   ve 
   KIR65195.1 196 QVARSPFGQVAAYPVVETV-QVGGICVEVLAPAPGLPEELAVAAQQLAIDLATALGVVGLLAVEL 259
                  ********99888877764.5544445567****************************9888875 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.7e-06    0.0053       2      90 ..     106     188 ..     105     199 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.7e-06
                 BHHHHHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEES.C-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE--- CS
      GARS_A   2 sKsfakdllkkagiptaeyeaftdpeeakeyieeatakalVvKad.glaagKgvivakseeealkavkeilekkkfGeagekvviEelle 90 
                 +K+ +++ l + g p + ++ + +p+++ ++ +++++++ V+Ka+ g   g+gv +++++++a + ++ +l     G  g+++++Ee++ 
  KIR65195.1 106 DKQVMRERLGELGAPNPAWRPVAEPADLVAFGDAQGWPV-VLKAArGGYDGRGVWLVDDAAQAAELATTLLA----G--GTRLIVEERVA 188
                 79999**********************************.9997527789*********************7....4..79999999975 PP

>> PRODH  Proline utilization A proline dehydrogenase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.6       1.2   2.4e+03      32      43 ..     163     174 ..     161     176 .. 0.76
   2 ?   15.0   1.0   1.1e-05     0.021      18      47 ..     220     249 ..     218     249 .. 0.97
   3 ?   -3.1   0.4       4.8   9.6e+03      32      40 ..     370     378 ..     366     383 .. 0.50

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.2
       PRODH  32 eraairalArkL 43 
                 ++a++++lA+ L
  KIR65195.1 163 DAAQAAELATTL 174
                 678888888877 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.1e-05
       PRODH  18 cVapLleaArlpeaeraairalArkLveal 47 
                 cV+ L +a  lpe+++ a+++lA +L++al
  KIR65195.1 220 CVEVLAPAPGLPEELAVAAQQLAIDLATAL 249
                 9***************************98 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 4.8
       PRODH  32 eraairalA 40 
                  ra+++  A
  KIR65195.1 370 VRARAARAA 378
                 344444444 PP

>> LAL_C2  L-amino acid ligase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.1   8.1e+03      38      70 ..     267     299 ..     260     300 .. 0.71
   2 ?   12.7   0.1   5.4e-05      0.11      46      70 ..     354     378 ..     334     382 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.1
      LAL_C2  38 evrpprssgdrlGyviatgdtaeeaeaaaeeaa 70 
                 +v+++    +  G+  ++g+   + e+ +++++
  KIR65195.1 267 VVNELAMRPHNSGHWTIEGARTSQFEQHLRAVL 299
                 566666666777888888888888888888776 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.4e-05
      LAL_C2  46 gdrlGyviatgdtaeeaeaaaeeaa 70 
                 g  +G+v + gd+ ++++a+a++aa
  KIR65195.1 354 GRKIGHVTVLGDDLADVRARAARAA 378
                 4689*******************98 PP

>> TPR_5  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00012      0.24      37      81 ..      22      67 ..      15      90 .. 0.83
   2 ?   -0.4   0.0      0.67   1.3e+03      36      54 ..     237     255 ..     225     269 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
       TPR_5 37 rrratiqLassLRnlGea.eealaLLraeleapsdelddalaafla 81
                  +a i L  sLR+l +a +++ aL+ a ++ +++   +al++f+ 
  KIR65195.1 22 THQAAIALGQSLRVLAQApDDGAALVAADVQYGDHTDLAALRTFAK 67
                579************985489***********99999999999875 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.67
       TPR_5  36 rrrratiqLassLRnlGea 54 
                  ++++ i La +L ++G +
  KIR65195.1 237 AAQQLAIDLATALGVVGLL 255
                 578999*******999965 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.5   3.7e-05     0.074       3      69 ..      15      77 ..      14     110 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.7e-05
                    TSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-- CS
  NAD_binding_10  3 tGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalg 69
                     G+ +r   + ++a g  ++++l+  p++ a+l    +++v  gd td ++l+   kg+d+V + + 
      KIR65195.1 15 GGQLARMTHQAAIALG-QSLRVLAQAPDDGAALV---AADVQYGDHTDLAALRTFAKGCDVVTFDHE 77
                    5999999999999995.89**********99875...79***********************99775 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00042      0.84      34     106 ..     139     215 ..     131     276 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00042
                      HC-SSEEEEESSSST.TTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--.ESEEEEEEEEE..TSSCEEEEEEEEE- CS
  Dala_Dala_lig_C  34 elgypvfVKpareGS.SvGvskveseeelkeaieeafkydekvlvEeai.egreievavlg..neklevsevgeivv 106
                      + g+pv+ K+ar G    Gv  v  +++ +e   + +   ++ +vEe +   re+ v v     +++ + +v+e v+
       KIR65195.1 139 AQGWPVVLKAARGGYdGRGVWLVDDAAQAAELATTLLAGGTRLIVEERVaLRRELAVQVARspFGQVAAYPVVETVQ 215
                      5699**********6268*******************************7789****99883334555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2630.98
//
Query:       KIR65196.1  [L=163]
Description: N5-carboxyaminoimidazole ribonucleotide mutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-66  222.8   1.2    1.6e-66  222.4   1.2    1.0  1  AIRC      AIR carboxylase


Domain annotation for each model (and alignments):
>> AIRC  AIR carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.4   1.2   9.2e-71   1.6e-66       2     146 ..       4     148 ..       3     149 .. 0.98

  Alignments for each domain:
  == domain 1  score: 222.4 bits;  conditional E-value: 9.2e-71
                 EEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHCHTTTEEEEEEEEESS--HHHHHHHHSSS-EEEEEE--STTCCHHHHHHHH CS
        AIRC   2 VgiimGSdsDlevmkkaaeilkelgveyevrvvSahrtpeelleyaeeaeerglkviIagAGgaahLpgvvaslttlPVigvPvkskalkgldsllSiv 100
                 Vg+imGSdsD+++m++a e+l+e+gv yev vvSahrtp +++ey ++a++rglkviIagAGgaahLpg+vas+t+lPVigvPv  k+l+g+dsllSiv
  KIR65196.1   4 VGLIMGSDSDWPTMRAAGEALAEFGVGYEVGVVSAHRTPGKMIEYGRTAADRGLKVIIAGAGGAAHLPGMVASVTPLPVIGVPVPLKHLDGMDSLLSIV 102
                 99************************************************************************************************* PP

                 T--TTS--EE-SSTHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHH CS
        AIRC 101 qmPsgvpvatvaigkaknAallAaqilalkdeelaekleeyreelk 146
                 qmP+gvpvatv+ig+a+nA+llA++ila++deel++++ +y+++l+
  KIR65196.1 103 QMPAGVPVATVSIGNARNAGLLAVRILAAADEELRARMVAYQASLE 148
                 *****************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1150.74
//
Query:       KIR65197.1  [L=1666]
Description: permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.36   10.9   1.3       0.76    9.8   1.3    1.5  1  HypA            Hydrogenase/urease nickel incorporation, meta
        0.9    9.6   3.8        1.4    9.0   3.8    1.2  1  zinc-ribbons_6  zinc-ribbons


Domain annotation for each model (and alignments):
>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.3   8.5e-05      0.76      70      98 ..       3      28 ..       1      38 [. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 8.5e-05
                EEEETTTS-EEECHHHHHS-TTTSSS-EE CS
        HypA 70 kvrCreCgkefeleekalrCpkCgsadve 98
                +++C++C++e++ +   ++Cp+Cg+++ +
  KIR65197.1  3 TFQCSSCSREIKPA---AQCPHCGAHQPQ 28
                589********977...46*****99865 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.8   0.00015       1.4      15      37 ..       2      24 ..       1      28 [. 0.91

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00015
                    SEEE-TTT--EEEEEEE-SSS-S CS
  zinc-ribbons_6 15 eqyhCeaCqedlkkealCpeCeq 37
                    ++++C++C++++k  a Cp+C+ 
      KIR65197.1  2 QTFQCSSCSREIKPAAQCPHCGA 24
                    5799*****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1666 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1270  (0.070835); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.39u 0.33s 00:00:01.72 Elapsed: 00:00:00.53
# Mc/sec: 9436.86
//
Query:       KIR65198.1  [L=475]
Description: UDP-glucose 6-dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-56  191.2   0.0    1.9e-56  190.6   0.0    1.2  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
    6.1e-31  106.5   0.0    1.3e-30  105.4   0.0    1.6  1  UDPG_MGDP_dh    UDP-glucose/GDP-mannose dehydrogenase family,
    2.1e-26   92.4   0.0    9.4e-26   90.3   0.0    2.1  2  UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family,
    4.2e-06   27.0   0.0     0.0023   18.1   0.0    2.6  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
     0.0029   18.1   0.2          7    7.3   0.0    3.6  3  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
     0.0062   16.4   0.0      0.032   14.1   0.0    2.1  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
  ------ inclusion threshold ------
      0.016   14.6   0.0       0.91    8.9   0.0    2.4  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
        0.2   11.7   0.0        1.4    9.0   0.0    2.3  2  CbiA            CobQ/CobB/MinD/ParA nucleotide binding domain


Domain annotation for each model (and alignments):
>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.6   0.0   8.7e-60   1.9e-56       2     179 ..      27     202 ..      26     209 .. 0.97

  Alignments for each domain:
  == domain 1  score: 190.6 bits;  conditional E-value: 8.7e-60
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-----B-TTTTCB- CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDideekvdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaVgTPskkkgkaaD 96 
                     +++++G+GY+G++ a+++ae+g ev+g D+d+ k++kln+g++pi epgL+el+++++++grl+f+td+ ++++  dv+fi+VgTP++ +g+ aD
      KIR65198.1  27 RVTFLGTGYLGATYAICYAELGYEVLGFDVDADKIAKLNAGEVPIHEPGLDELLRRNLAAGRLRFSTDIAETADFGDVHFICVGTPQRADGMGAD 121
                     799******************************************************************************************** PP

                     THHHHHHHHHHHHHHHCEEEEEE-S---TTHHHHCHHHHHHHHCSS-TTCEEEEE------TTSHHHHHHS-S-EEEEESSCH CS
  UDPG_MGDP_dh_N  97 lkyvesaarsiaealkkgkvvvvkSTvpvgtaeelvkkileeaskkkgvdfdvvsnPEflregsavkdllnpdrvviGveekk 179
                     l+yve+ +  +a++l ++ ++v kSTvpvgtae +v++++ ++  + +  ++v+++PEfl+eg av d+l+p+r+v+Gv+++ 
      KIR65198.1 122 LSYVEASVTGLAQHLTRKALIVGKSTVPVGTAE-WVEQLVGKHTPA-DLGVEVAWSPEFLQEGFAVDDVLRPNRIVVGVKSDW 202
                     ********************************9.999999988875.69******************************9875 PP

>> UDPG_MGDP_dh  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0     6e-34   1.3e-30       2      92 ..     234     326 ..     233     328 .. 0.95

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 6e-34
  UDPG_MGDP_dh   2 tAEliKlaaNaflatkIsfiNelanlcealgidveeVieavgldprigpkflkpglGvGGsclpkDvkaLvalaeelgle..aelleavrevN 92 
                   tAEl+K+aaNaflatkIsfiN +a++ce  g dv+++++a+g dprig++fl++glG+GG clpkD++a+ a+a+elg    +++l++v+ +N
    KIR65198.1 234 TAELVKVAANAFLATKISFINAMAEVCEVAGGDVTQLAKAIGYDPRIGNRFLQAGLGFGGACLPKDIRAFQARAQELGAGeaLRFLHEVDLIN 326
                   8***************************************************************************98776689999998888 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.9   4.4e+03      32      74 ..      68     111 ..      58     115 .. 0.66
   2 !   90.3   0.0   4.2e-29   9.4e-26       1     104 [.     358     458 ..     358     459 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.9
                     EEEEE-SSTHHCCCCHHGGBTCCEEES-CHHHHT..T-SEEEE-S CS
  UDPG_MGDP_dh_C  32 evkiyDPkvkeeaveaeleekgvevvdsleealk..gadaivilt 74 
                     ev i++P  +e  +++ + + ++++ ++++e+++  +++ i++ t
      KIR65198.1  68 EVPIHEPGLDELLRRNLA-AGRLRFSTDIAETADfgDVHFICVGT 111
                     788999999998887766.57888888886655411555555555 PP

  == domain 2  score: 90.3 bits;  conditional E-value: 4.2e-29
                     EEE-SSSSTT-S--TT-HHHHHHHHHHHCTSEEEEE-SSTHHCCCCHHGGBTCCEEES-CHHHHTT-SEEEE-S--GGGGGS-HHHHHHCCSS-E CS
  UDPG_MGDP_dh_C   1 ailGlafKkdtdDlReSpaldiieeLleegaevkiyDPkvkeeaveaeleekgvevvdsleealkgadaiviltehdefkeldlaklkelmkpav 95 
                     a+lG +fK++tdD+R++pal+++  L ++ga+v+++DP+  e+a++    + ++++ +++++a++gad++++lte+ +f++ d   l el++ + 
      KIR65198.1 358 AVLGATFKPNTDDVRDAPALAVAGLLGKAGADVHVFDPQGAENARRV---APELTYESTMADAVTGADLVCVLTEWADFRNADPVALGELVAGRR 449
                     89*******************************************99...6789***************************************** PP

                     EEESSS-CC CS
  UDPG_MGDP_dh_C  96 vfDgrnvld 104
                     v+Dgrn+ld
      KIR65198.1 450 VVDGRNCLD 458
                     *******98 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     1e-06    0.0023       2     105 ..      28     161 ..      27     173 .. 0.88
   2 !    6.1   0.0    0.0051        12      17      62 ..     382     427 ..     377     457 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1e-06
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT....................EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.. CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg....................akaaesieelvasldvvitmvkagkavdevieg.. 75 
                    + f+G+G +G+  a   ++ gy+v +++++++k+ +l a +                    ++  ++i+e ++  dv +++v   +  d +  +  
     KIR65198.1  28 VTFLGTGYLGATYAICYAELGYEVLGFDVDADKIAKLNAGEvpihepgldellrrnlaagrLRFSTDIAETADFGDVHFICVGTPQRADGMGADls 123
                    78************************************99999*************9977777777777777777********9999988887777 PP

                    ........HCCC--TT-EEEE-S---HHHHHHHHHHHH CS
  NAD_binding_2  76 ........llealkkgdilidgstsspedtrelakelk 105
                            l+++l + ++++  st+ + +++ +++ + 
     KIR65198.1 124 yveasvtgLAQHLTRKALIVGKSTVPVGTAEWVEQLVG 161
                    88888888****************99988887776655 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0051
                    HHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE- CS
  NAD_binding_2  17 nllkagykvavynrtkekveelvaegakaaesieelvasldvvitm 62 
                     l kag +v+v++ + ++  + va +++  ++++++v+++d+v ++
     KIR65198.1 382 LLGKAGADVHVFDPQGAENARRVAPELTYESTMADAVTGADLVCVL 427
                    56799**********999999999****************999764 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0031         7       1      70 [.      27     110 ..      27     125 .. 0.79
   2 ?   -0.1   0.1      0.63   1.4e+03      48      77 ..     227     256 ..     179     263 .. 0.76
   3 !    5.7   0.0      0.01        22      13      77 ..     378     436 ..     376     453 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0031
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC....................-EEECECHHHHHHH-SEEEE-S- CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg....................vkvtavdneeaaeeadvvvlavk 70 
                    ++ ++G+G +g++ a   ++ g   +e++ + + + +k+++l +  +                     + ++ d +e+a+  dv +++v 
     KIR65198.1  27 RVTFLGTGYLGATYAICYAELG---YEVL-GFDVDADKIAKLNAG-EvpihepgldellrrnlaagrLRFST-DIAETADFGDVHFICVG 110
                    689*******************...****.99*******999643.23577788888888887777545555.77888888888888875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.63
                    -EEECECHHHHHHH-SEEEE-S-HHHHHHH CS
  F420_oxidored  48 vkvtavdneeaaeeadvvvlavkpedveev 77 
                      vt  +++e+++ a   +la k + + ++
     KIR65198.1 227 LVVTDFATAELVKVAANAFLATKISFINAM 256
                    556777888999999999999998877665 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.01
                    HHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHH CS
  F420_oxidored  13 alasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveev 77 
                    a+a  l +ag    ++ v   +  e a+  a el     +++ ++a++ ad v +   ++d+ ++
     KIR65198.1 378 AVAGLLGKAG---ADVHVFDPQGAENARRVAPELT---YESTMADAVTGADLVCVLTEWADFRNA 436
                    5677788899...9999887888888888888875...44477************9999998765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.4e-05     0.032       2      40 ..      28      66 ..      27     104 .. 0.74
   2 ?   -1.2   0.0      0.71   1.6e+03      57      81 ..     398     423 ..     377     425 .. 0.51

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekale 40
                v+ +G+G +Ga  a   a+ g+eV  +d+++++++k ++
  KIR65198.1 28 VTFLGTGYLGATYAICYAELGYEVLGFDVDADKIAKLNA 66
                899***************************999988665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.71
                 HHHHCCCHHCEEEES-HHHHH.C-SE CS
     3HCDH_N  57 eeeveaalarisfttdleeav.dadl 81 
                 +e++++++ ++++++ +++av +adl
  KIR65198.1 398 AENARRVAPELTYESTMADAVtGADL 423
                 23444455555555555555555555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00041      0.91      38      90 ..      27      81 ..      18      83 .. 0.79
   2 ?    3.0   0.0     0.026        58      50      99 ..     378     428 ..     376     432 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00041
                  EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH..CHHHHTCEECSHHHHHH CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkee..eeeelgvelvsleella 90
                  +v  +G+G +G + a + +++g +v+++d+  +k +  ++ e+ ++   l+ell+
    KIR65198.1 27 RVTFLGTGYLGATYAICYAELGYEVLGFDVDADKIAklNAGEVPIHEPGLDELLR 81
                  7889***************************998873444444445557777776 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.026
                   HHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC.SHHHHHHH-SEEEE-S CS
  2-Hacid_dh_C  50 avakrlkafgmkviaydrskkkeeeeeelgvelv.sleellaesDivslhl 99 
                   ava +l + g++v ++d++  ++++  + +++++ ++ +++  +D v++ +
    KIR65198.1 378 AVAGLLGKAGADVHVFDPQGAENARRVAPELTYEsTMADAVTGADLVCVLT 428
                   79999999***********999885555566565599999999**999875 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00061       1.4      18      55 ..      39      85 ..      36     335 .. 0.75
   2 ?   -0.4   0.0      0.49   1.1e+03      17      42 ..     377     402 ..     375     421 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00061
                HHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH..........C CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........x RF
        CbiA 18 nLaralarrglrVllvDaDpqannlaileglendiep..........d 55
                + a++ a+ g++Vl +D+D +  +     g ++ +ep           
  KIR65198.1 39 TYAICYAELGYEVLGFDVDADKIAKL-NAGEVPIHEPgldellrrnlA 85
                568999**************944433.555555555555555555550 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.49
                 HHHHHHHHHTT--EEEEEEEESSCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  17 anLaralarrglrVllvDaDpqannl 42 
                 ++ a +l ++g +V ++D +   n+ 
  KIR65198.1 377 LAVAGLLGKAGADVHVFDPQGAENAR 402
                 678999************87766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3182.04
//
Query:       KIR65199.1  [L=387]
Description: acyl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-48  163.9   7.6    5.2e-48  163.1   7.6    1.4  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
      1e-29  103.5   0.2      2e-29  102.5   0.2    1.5  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    2.9e-28   97.9   0.0    5.6e-28   97.0   0.0    1.5  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
      8e-25   87.7   4.2      8e-25   87.7   4.2    1.9  2  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.1   7.6   1.2e-51   5.2e-48       1     150 []     235     385 ..     235     385 .. 0.99

  Alignments for each domain:
  == domain 1  score: 163.1 bits;  conditional E-value: 1.2e-51
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------.HHHHHHHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd.raeasmaKlfa 95 
                    g Gf+ am+tl+h+R+++aa+a+g+a+ al+ a  y+++rk+fg++++++q v+++la+m  +leaar l+y+aa + ++g+ d +   ++aK fa
     KIR65199.1 235 GTGFATAMKTLDHTRVTIAAQAVGIAQGALDYAKGYVQERKQFGRAVAEFQGVQFMLADMGMKLEAARQLTYAAAGRSERGDADlTYFGAAAKCFA 330
                    67********************************************************************************************** PP

                    HHHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHHH. CS
  Acyl-CoA_dh_1  96 selaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarrll 150
                    s++a+e++++a+qllGg+Gy+++ypver++rda++++i+eGt+++qr ++ar+ll
     KIR65199.1 331 SDAAMEITTDAVQLLGGYGYTRDYPVERMMRDAKITQIYEGTNQVQRIVMARQLL 385
                    ****************************************************985 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.2   4.4e-33     2e-29       2     113 .]      14     124 ..      13     124 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 4.4e-33
                    HHHHHHHHHHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHHS CS
  Acyl-CoA_dh_N   2 eeqealrdtvrefaeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailrfG 97 
                    ee+ea+r++vre+++ ++aphaae+de+gefp++ +++l  +++ + ++p eygGag+d+l++aiv+ee+ara+a+ +l+++v + l++ +++  G
     KIR65199.1  14 EEHEAVREAVREVCAAKVAPHAAEADETGEFPKASYDALRSADFHAPHIPVEYGGAGADALATAIVIEEVARACASSSLIPAV-NKLGTMPLILAG 108
                    9********************************9******************************************9998888.6688889***** PP

                    -HHHHHHHHHHHHTTS CS
  Acyl-CoA_dh_N  98 teeqkrryLpklasge 113
                    ++e kr yL ++a+ge
     KIR65199.1 109 SDELKRAYLTPVAAGE 124
                    **************98 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.0   1.2e-31   5.6e-28       1      97 []     128     223 ..     128     223 .. 0.92

  Alignments for each domain:
  == domain 1  score: 97.0 bits;  conditional E-value: 1.2e-31
                    EEE---SS-SS-GGG---EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE. CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvkttaaerdggeyvlnGeKiwitnaaiatlalvlartekpdrarglslflvprdapgvsvrrieeklGlrglptgelvfed 96 
                    +++l+Ep+aGsd+as++t  a rdg+++vlnG K+witna+ +++++v+a t+ ++r++g+s f+v+++++gvs++  e+klG++g pt e+++++
     KIR65199.1 128 SYCLSEPEAGSDAASMTT-RAVRDGDHWVLNGVKRWITNAGVSDFYTVFAVTDPTARSKGISAFVVEKSDQGVSFGAPEKKLGIKGSPTREVYLDN 222
                    589***************.56667778************************544449**************************************9 PP

                    . CS
  Acyl-CoA_dh_M  97 v 97 
                    v
     KIR65199.1 223 V 223
                    7 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2         1   4.6e+03      71      71 ..      40      40 ..      13      91 .. 0.51
   2 !   87.7   4.2   1.8e-28     8e-25       2     133 ..     251     373 ..     250     374 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1
                   T CS
  Acyl-CoA_dh_2 71 a 71
                   +
     KIR65199.1 40 E 40
                   2 PP

  == domain 2  score: 87.7 bits;  conditional E-value: 1.8e-28
                    HHHHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   2 giaavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaa 97 
                    +iaa+a+G+A++al+ +  +++er++  +g+++a+++ +q+ la++ ++l+AAr+l+++aa r    +++g++   +++  +++a+ +a++ a ++
     KIR65199.1 251 TIAAQAVGIAQGALDYAKGYVQERKQ--FGRAVAEFQGVQFMLADMGMKLEAARQLTYAAAGR----SERGDA---DLTYFGAAAKCFASDAAMEI 337
                    79************************..***********************************....777766...788899************** PP

                    HHHHHHHCGGGGGBTT-HHHHHHHHHHHHCTSGGG- CS
  Acyl-CoA_dh_2  98 vdalfeaaGgsalrkesplqRlwRDahaaaaHaaln 133
                    + +++++ Gg++++ ++p++R++RDa+++++++++n
     KIR65199.1 338 TTDAVQLLGGYGYTRDYPVERMMRDAKITQIYEGTN 373
                    *********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2776.21
//
Query:       KIR65200.1  [L=218]
Description: hypothetical protein TK50_06865 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.5    8.9   5.7       0.36   10.8   0.6    2.4  2  PsbX      Photosystem II reaction centre X protein (PsbX)


Domain annotation for each model (and alignments):
>> PsbX  Photosystem II reaction centre X protein (PsbX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6     2e-05      0.36       9      32 ..       4      25 ..       3      28 .. 0.89
   2 ?   -0.8   0.5      0.09   1.6e+03      12      23 ..      74      84 ..      69      90 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2e-05
                HHHHHHHH.HHHHHHHHHHHHHHH CS
        PsbX  9 llSLvaGalvVvipiaaaLifvSq 32
                l+S++aG   Vv+p++ +L ++ q
  KIR65200.1  4 LWSFLAGL--VVAPVTWVLLALGQ 25
                8******9..******99988755 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.09
                HHHHH.HHHHHH CS
        PsbX 12 LvaGalvVvipi 23
                LvaG  + ++p 
  KIR65200.1 74 LVAGL-LLIAPY 84
                66666.555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1724.84
//
Query:       KIR65201.1  [L=178]
Description: acyl-CoA hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-17   61.7   3.4      1e-16   61.0   3.4    1.3  1  4HBT      Thioesterase superfamily
  ------ inclusion threshold ------
      0.097   13.2   0.0       0.12   12.9   0.0    1.2  1  4HBT_2    Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   3.4   1.2e-20     1e-16       1      73 [.      39     110 ..      39     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 1.2e-20
                 TSSB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEET CS
        4HBT   1 gGvvhgGvylallDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrde 73 
                 +G+vhgGv+++++D +agaa++++ g+ ++v+++ ++i f  +vr+gd + ++a+v+++g ts++v v+v++e
  KIR65201.1  39 YGTVHGGVLMKFVDDVAGAAAARHSGG-TAVTAAIDEIVFSEAVRVGDLVHAHAQVNWTGQTSMEVGVRVVAE 110
                 69************************8.******************************************987 PP

>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.3e-05      0.12      27     119 ..      49     145 ..      22     163 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
      4HBT_2  27 kflertglksrsiarrgiglilssa..hvryrrplkfpdrltvefrvididaktliiehrflsna....dgkk..aarveerivvmdygkrskkapvPp 117
                 kf+  + +   ++ar+++g  + +a  ++ + + ++ +d ++ + +v +  ++++ + +r++ ++    ++    +a++  + v +d+g+  ++ pv p
  KIR65201.1  49 KFV--DDVAGAAAARHSGGTAVTAAidEIVFSEAVRVGDLVHAHAQVNWTGQTSMEVGVRVVAERwdsaEDEPvpVATAYLVFVGVDVGG--LPRPVRP 143
                 444..5554445555555555555449************************************4444444444689************87..6888877 PP

      4HBT_2 118 el 119
                 +l
  KIR65201.1 144 VL 145
                 65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1408.95
//
Query:       KIR65202.1  [L=662]
Description: acetoacetyl-CoA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-49  168.0   0.0    3.2e-49  167.7   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    1.3e-13   50.6   0.4      3e-13   49.5   0.4    1.7  1  ACAS_N         Acetyl-coenzyme A synthetase N-terminus
    1.4e-06   29.1   0.1    4.5e-06   27.6   0.1    1.9  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.7   0.0   5.4e-53   3.2e-49      13     421 ..     104     524 ..      99     526 .. 0.88

  Alignments for each domain:
  == domain 1  score: 167.7 bits;  conditional E-value: 5.4e-53
                  EEEE...CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE........ CS
  AMP-binding  13 alvd...sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli........ 99 
                  +++    +   qtlT + l+e+v+r+AagLr+lGv++gdrVa ++pn pe +v+lla++++Ga+ + + p+++ + +    ++ e+kvl+        
   KIR65202.1 104 VVIAhgqTRAPQTLTAAGLREQVRRVAAGLRRLGVGPGDRVAAYAPNIPETYVLLLATASLGAIFSSCAPEFGTRSVTDRWRQIEPKVLVavdgyryg 201
                  454555666789********************************************************************************999876 PP

                  E.TCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHH CS
  AMP-binding 100 a.tvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslklet 195
                  +  vd++  ++++++a ++le++ +v +ld ++++    l+++e ++  + +p + + +  d+++y++Y+SGTTG PK +++ h+ ++    ++ l  
   KIR65202.1 202 DkPVDRRGeVAAIRAALPSLEHTVAVAYLDPAGPAPDGALPWAELAAPTD-EPLTFAGVPFDHPLYVLYSSGTTGLPKPIVHGHGGILLEHLKM-LAL 297
                  3788999999********************************99988776.4667777788***********************9998887776.566 PP

                  CSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEES CS
  AMP-binding 196 rfklkeddvvlsilplahifglilelllallsGatvvllpkdaa.ldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllgg 292
                  +++l+++d+++++    +++    +l  a ++Ga++vl+++++  +d + l++l ++ + t++ +   +l a+ ++g     ++  dls+lr v + g
   KIR65202.1 298 HHDLGPGDRFFWFTTTGWMMW--NFLVSAPAVGAAIVLFDGNPGhPDLGGLWRLAAETGTTYFGTSAPFLLACRKAGLVP--REVADLSALRGVGSTG 391
                  677889*************98..678888888***********98996667799999****************9976666..3455************ PP

                  S-EBHHHHHHHHHHHTC..EEEEEEEEGGGSSECEE..CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEET..TS-SEBTT-H.. CS
  AMP-binding 293 eplspellrffralfge..evlegYGlTEttgvvtv..lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgp..gvmkgYlkkp.. 382
                  +pl++e  +++++ +g+  ++  + G T  ++ ++   + l+ +   +g +     g++v+    + g pv  ge Gel++  p  ++  g++++   
   KIR65202.1 392 APLPAEGFTWVYEAVGTdlQLQSLSGGTDVCTGFVGgvPLLPVH---AGEITCRALGARVEARSAD-GTPV-LGELGELVITAPmpSMPVGFWNDTdg 484
                  *******************9************997543333444...7888888889999999998.8888.9*********99668999****7435 PP

                  HHHHHHEEET..CCEEEEEEEEEEETTSEEEEEEECCCEEE CS
  AMP-binding 383 eataeafdse..grwlrTGDlgrldedGyleivgRkkdlik 421
                  ++ +ea++ e  ++  r GD  +++e+G   i+gR++ +++
   KIR65202.1 485 SRYREAYF-ElyPGVWRHGDWITINERGGCVITGRSDATLN 524
                  8999**99.445579999*******************9876 PP

>> ACAS_N  Acetyl-coenzyme A synthetase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.4     5e-17     3e-13       1      55 []      36      92 ..      36      92 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 5e-17
                HHHHHHHHHH-HHHHHHHHHCC..S--SB--S-SECSTTTCT-EESTT-EE-HHHHH CS
      ACAS_N  1 ykelykeSiedpeaFWaeqake..ldWekpfdkvldgskgpfikWFeGGklNicyNc 55
                y++l+++S++d ++FW++++++  +  +++++ +l +  +p ++WF+G++lN+++N+
  KIR65202.1 36 YAALWEWSVTDLDGFWRSVWDHfgVVAHTEPTATLADPAMPGARWFPGATLNYAENV 92
                89*******************988889****************************96 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   7.5e-10   4.5e-06       4      76 .]     537     613 ..     534     613 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 7.5e-10
                    HHHHSSTTEEEEEEE-----TTS.---EEEEEE---.-.--.HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   4 salvshpaVaeaaVvGvpdevkG.ealvafVvlkdg.s.ea.leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    s++   ++V + +Vv   d+  G   l+ fVvl+dg + ++ l++++ + +r++l p  vp++++ v ++p+t s K
     KIR65202.1 537 SVVEGLDEVVDSVVVHLEDDEGGaGELLLFVVLADGlElDDaLRKKICRELRTALSPRHVPDEIHQVRAVPRTLSAK 613
                    67888999************888556*******999633335999999999**********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4512.15
//
Query:       KIR65203.1  [L=229]
Description: AMP-dependent synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-06   26.9   0.8     0.0002   20.1   0.1    2.1  2  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   1.1e-08    0.0002      12      75 ..      20      88 ..       9      90 .. 0.87
   2 !    5.5   0.1    0.0003       5.4      33      78 ..     163     208 ..     158     226 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.1e-08
                 EEEEE....CCSTEEEEHHHHHHHHHHHHHHHH.HTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEE CS
  AMP-binding 12 valvd....sgegqtlTYreldervnrlAagLr.slGvkkgdrVaillpnspewvvallailkaGavvv 75
                 + l++    +ge + l+ + l + v + A+ L+ +  +++g+  + llp+ ++  ++ll++++aG+vv+
   KIR65203.1 20 PLLTWyddaTGERTELSGATLANWVAKTANLLTdEVAAGPGESAGALLPPHWQTAAVLLGCWSAGLVVA 88
                 55544566778999*******************99999****************************985 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0003
                  HHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEE CS
  AMP-binding  33 nrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvpln 78 
                  +r+Aa   +lG+ +gdrV++ +   p+ v +lla l aGa +v + 
   KIR65203.1 163 SRAAARAAELGLARGDRVLLDVTAHPDPVDWLLAPLVAGASTVLCA 208
                  5666666788*****************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1869.72
//
Query:       KIR65204.1  [L=381]
Description: glycosyl transferase family 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-19   68.2   0.0    1.1e-18   67.4   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
    1.3e-17   64.3   0.8    1.3e-17   64.3   0.8    1.8  2  Glyco_transf_4   Glycosyltransferase Family 4
    7.3e-16   58.8   0.0    2.5e-15   57.1   0.0    1.9  2  Glyco_trans_1_4  Glycosyl transferases group 1
      1e-10   42.3   6.1      1e-10   42.3   6.1    2.4  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    5.7e-08   33.1   0.0    1.1e-07   32.1   0.0    1.4  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0     3e-22   1.1e-18      13     169 ..     203     356 ..     192     359 .. 0.93

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 3e-22
                      TT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBSS- CS
  Glycos_transf_1  13 ekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEgfG 106
                      ++  ++ ++g+ e++K+v +li+ +a+  ++++++  lv+aG++ + + + + ++e     ++   g++ + dl+ +l  a ++++ps+ EgfG
       KIR65204.1 203 GDSSYVAFLGAKEPRKNVPNLIRGWARAVADRQDPPALVVAGGQGHDDDIDRAVAEVPSHLRLLRPGYLRYADLPGFLGGALVAAYPSYGEGFG 296
                      5678899**********************99*************************************************************** PP

                      HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHH CS
  Glycos_transf_1 107 ivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgena 169
                      +++lEAma+  pv+++    ++ev  d++    + ++ +e++a+ ++ ll+de++r  l +++
       KIR65204.1 297 LPILEAMACAAPVLTTPRLSLPEVGGDAV---AYTSEAPEQIAADLAALLDDEQRRLSLAKAG 356
                      *****************************...4555566**************9999998887 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.8   3.6e-21   1.3e-17       2     168 ..      21     182 ..      20     184 .. 0.90
   2 ?   -1.4   0.0      0.57   2.1e+03      12      58 ..     228     274 ..     221     281 .. 0.68

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 3.6e-21
  Glyco_transf_4   2 GGverhvleLaraLar...rGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrr 93 
                     GGv+r+v  L  aL +   +G++  vv  ++d + + +   + ++++ p     r+ r  +    l  l+++ +  v+H+ ++ + +        
      KIR65204.1  21 GGVGRYVDGLLGALGKvcgQGVDLAVVGLRTDLERYSRMLPGAEIVAAPAAVAHRPARLAWEQTGLPLLAQQVGAQVLHSPFYTCPLR------- 108
                     9***************999********99999988888889999999999****************************9999887743....... PP

  Glyco_transf_4  94 rlgiplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDl 168
                       g+p+ +tvH+    +  + + k ++ ++r   +  lrra rvi++S+at+del+++++ +p +i V ++GvD 
      KIR65204.1 109 -AGCPVTVTVHDATFFTEPEHYDKSRRTFFRSAIKTSLRRAARVIVPSKATRDELIRLLDADPTRIDVAYHGVDH 182
                     .5************955555566666667777788899************************************7 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.57
  Glyco_transf_4  12 araLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrsl 58 
                     ara a+r     +v+ g++g+ ++ ++ v +vp+  ++l++++lr+ 
      KIR65204.1 228 ARAVADRQDPPALVVAGGQGHDDDIDRAVAEVPSHLRLLRPGYLRYA 274
                     56666666666666555555555555888888888888888887765 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.3   4.6e+03      70      70 ..      60      60 ..      27      99 .. 0.53
   2 !   57.1   0.0   6.9e-19   2.5e-15       4     134 .]     208     345 ..     205     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.3
                     H CS
  Glyco_trans_1_4 70 l 70
                     l
       KIR65204.1 60 L 60
                     2 PP

  == domain 2  score: 57.1 bits;  conditional E-value: 6.9e-19
                      EEEES---GG.GTHHHHHHHH.HHHH.H.H.EEEEEES---...HHHHHHHTT-T.T..EEEE---..THHHHHHHH-SEEEE--..---SHHH CS
  Glyco_trans_1_4   4 ilfvGrleenvkgvdllleav.pllrkk.d.vrlvivGdgp.rpeeleelaagleer..veftGfv..edlaellaaadvfvaPs..egfglkl 87 
                      + f+G+  e++k+v  l++ +  +++++ d   lv++G g+  ++++++ +a++ ++      G++  +dl+ +l  a v+  Ps  egfgl +
       KIR65204.1 208 VAFLGAK-EPRKNVPNLIRGWaRAVADRqDpPALVVAG-GQgHDDDIDRAVAEVPSHlrLLRPGYLryADLPGFLGGALVAAYPSygEGFGLPI 299
                      7899988.678**********7778766547889***9.555667998777766555225556888999************************* PP

                      HHHHHTT-EEEE-TGGGTTT--TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  88 lEamaaglpvVatdvggiaevvgengllvppgdpealaeailrLled 134
                      lEama++ pv +t+   ++ev g +++   ++ pe++a+ +++Ll+d
       KIR65204.1 300 LEAMACAAPVLTTPRLSLPEVGG-DAVAYTSEAPEQIAADLAALLDD 345
                      *************98899**445.556677778************97 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   6.1   2.9e-14     1e-10       1     157 [.      21     176 ..      21     179 .. 0.80
   2 ?   -0.1   0.8      0.31   1.1e+03      59      79 ..     223     243 ..     181     351 .. 0.68

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 2.9e-14
  Glyco_trans_4_4   1 gGigryvaelaraLaa...rGheVtvltpapapgapeleedgvrvhrlpvprrpspladlaalralrrllrqrrerpdvvhahsptaglaarla 91 
                      gG+gryv  l+ aL +   +G+++ v+  + + +++ ++ +g++++  p+  ++ ++a+la+ +    ll +++ +  v+h+  +t +l     
       KIR65204.1  21 GGVGRYVDGLLGALGKvcgQGVDLAVVGLRTDLERYSRMLPGAEIVAAPAAVAH-RPARLAWEQTGLPLL-AQQVGAQVLHSPFYTCPL----- 107
                      8*************96555899999****999999999999****888765555.345555433333333.366688888888887666..... PP

  Glyco_trans_4_4  92 rrrrgiplvvtlhg....lllrrgsgavrrlyralerrllrradavlvvseaeaeelra.lgvpadrvvvv 157
                        r+g p+ vt+h+    ++++++   +r ++r + +++lrra++v+v+s a ++el++ l ++++r++v 
       KIR65204.1 108 --RAGCPVTVTVHDatffTEPEHYDKSRRTFFRSAIKTSLRRAARVIVPSKATRDELIRlLDADPTRIDVA 176
                      ..789********9444444666688889999***************************999******995 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.31
  Glyco_trans_4_4  59 alralrrllrqrrerpdvvha 79 
                       +r+ +r+++ r+ +p +v+a
       KIR65204.1 223 LIRGWARAVADRQDPPALVVA 243
                      445555555445555555443 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   3.2e-11   1.1e-07       5      88 ..     289     370 ..     279     373 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 3.2e-11
  Glyco_trans_1_2   5 psrsespnlrlfEaaacGafaltddaegleelftpgkevilfe.dleelaekiryllanpeerraiaeaarervlaehtydhrae 88 
                      ps  e++ l ++Ea+ac a++lt+++ +l+e    g+ v + +  +e++a+ +++ll+++++r ++a+a+  r  +e+t++  ae
       KIR65204.1 289 PSYGEGFGLPILEAMACAAPVLTTPRLSLPEVG--GDAVAYTSeAPEQIAADLAALLDDEQRRLSLAKAGFDR-AKEFTWESSAE 370
                      56668999****************999999995..544555557*****************************.89****98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2830.07
//
Query:       KIR65205.1  [L=334]
Description: ArsR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-08   34.5   3.3    1.6e-08   34.5   3.3    2.5  3  HTH_20          Helix-turn-helix domain
    1.7e-05   24.6   1.6    6.2e-05   22.8   1.6    2.0  1  MarR_2          MarR family
     0.0011   18.8   0.0     0.0021   17.9   0.0    1.4  1  HTH_5           Bacterial regulatory protein, arsR family
     0.0015   18.1   0.0     0.0057   16.2   0.0    2.0  2  HTH_24          Winged helix-turn-helix DNA-binding
     0.0058   16.3   0.1      0.013   15.2   0.1    1.5  1  Sigma70_r4_2    Sigma-70, region 4
     0.0093   16.1   0.0      0.024   14.9   0.0    1.6  2  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
  ------ inclusion threshold ------
      0.048   14.0   0.0      0.091   13.1   0.0    1.4  1  Rrf2            Transcriptional regulator


Domain annotation for each model (and alignments):
>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         3   7.6e+03      12      21 ..      46      55 ..      41      60 .. 0.70
   2 ?   -1.6   0.0       1.2     3e+03      24      45 ..     117     134 ..     100     141 .. 0.66
   3 !   34.5   3.3   6.3e-12   1.6e-08       2      60 ..     261     317 ..     260     318 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3
                HHHHHHHHST CS
      HTH_20 12 RrrilraLar 21
                Rr++ r+L+r
  KIR65205.1 46 RRGVSRELRR 55
                9999999944 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
                 TB-HHHHHHHHTS-HHHHHHHH CS
      HTH_20  24 gltaselaerldlskntlsyHL 45 
                 +++a++la+       ++ +HL
  KIR65205.1 117 PASAGALARG----EPEMLRHL 134
                 5566666654....34555554 PP

  == domain 3  score: 34.5 bits;  conditional E-value: 6.3e-12
                 HHHHHHS-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTE CS
      HTH_20   2 qiaeALahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvreg 60 
                 +++ AL+ ++R+++l a   ++g t +e+a+rl++s++ +s+H  vL+ agL+ + r +
  KIR65205.1 261 EALAALLGRTRAAVLEAT--DAGCTTGEVARRLRISPAAASQHATVLRNAGLLVSHRDR 317
                 57889999**********..********************************9888865 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   1.6   2.4e-08   6.2e-05       6      55 ..     270     315 ..     260     319 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.4e-08
                 HHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2   6 aqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrp 55 
                 + a vL a  ++    +t ge+arrl++s++a+s++   L  aGL++  +
  KIR65205.1 270 TRAAVLEATDAG----CTTGEVARRLRISPAAASQHATVLRNAGLLVSHR 315
                 444444444333....8****************************97655 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   8.3e-07    0.0021      16      45 ..     282     311 ..     275     313 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 8.3e-07
                 EEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  16 lcvcelaeelglsqstvShHLkkLreaGLV 45 
                 ++ +e a+ l++s+++ S+H  +Lr+aGL+
  KIR65205.1 282 CTTGEVARRLRISPAAASQHATVLRNAGLL 311
                 7999************************96 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.93   2.4e+03      29      43 ..     144     158 ..     143     160 .. 0.82
   2 !   16.2   0.0   2.2e-06    0.0057      14      47 ..     277     311 ..     263     312 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.93
      HTH_24  29 lSpstvnrrlkrLee 43 
                 l +s+ +++++  ++
  KIR65205.1 144 LALSPYWAHIQAAID 158
                 67899*****98766 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.2e-06
      HTH_24  14 k.nprisqreLAerlglSpstvnrrlkrLeeeGlI 47 
                 + +++++  e+A+rl +Sp++ +++   L ++Gl+
  KIR65205.1 277 AtDAGCTTGEVARRLRISPAAASQHATVLRNAGLL 311
                 459*****************************986 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1     5e-06     0.013       5      46 ..     260     301 ..     260     303 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5e-06
                   HHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHH CS
  Sigma70_r4_2   5 realaeLperqreifllryleglsykEIAellgisegtVksr 46 
                   reala+L  r r+++l     g+++ E+A++l is+++  ++
    KIR65205.1 260 REALAALLGRTRAAVLEATDAGCTTGEVARRLRISPAAASQH 301
                   79**********************************998877 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       2.9   7.4e+03       1       9 [.     133     141 ..     133     143 .. 0.89
   2 !   14.9   0.0   9.2e-06     0.024      23      58 ..     282     317 ..     274     319 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.9
                     X--HHHHHH CS
  Fe_dep_repress   1 dLvestEdY 9  
                     +L++s+E Y
      KIR65205.1 133 HLTDSMERY 141
                     699****99 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 9.2e-06
                     B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
  Fe_dep_repress  23 vktkdlaerLnvspssVsemlkkLekdGyveyekyk 58 
                      +t ++a+rL +sp+ +s+    L+++G+++ + ++
      KIR65205.1 282 CTTGEVARRLRISPAAASQHATVLRNAGLLVSHRDR 317
                     6899*************************9988776 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.6e-05     0.091      23      59 ..     279     315 ..     263     319 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.6e-05
                 CC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
        Rrf2  23 eepvsseeiaerqnispsylekilakLrkaglvksvr 59 
                 +  +++ e+a+r  isp  +++  + Lr+agl+ s r
  KIR65205.1 279 DAGCTTGEVARRLRISPAAASQHATVLRNAGLLVSHR 315
                 334999***************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2541.90
//
Query:       KIR65206.1  [L=362]
Description: F420-dependent oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-46  157.7   0.9    3.2e-35  121.6   0.2    2.2  2  F420_ligase  F420-0:Gamma-glutamyl ligase


Domain annotation for each model (and alignments):
>> F420_ligase  F420-0:Gamma-glutamyl ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   6.3e-13   1.1e-08       4      53 ..      11      56 ..       9      66 .. 0.88
   2 !  121.6   0.2   1.8e-39   3.2e-35     108     244 .]      76     210 ..      62     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 6.3e-13
                 -----TT--HHHHHHCCS-.....--TT-EEEEEHHHHHHHTT-EEEGGG CS
  F420_ligase  4 tplikegddlaeivvesvkkagleledgDivvvtekvvakaegnyvsled 53
                 +  + egddla++++ +       l+dgD++vvt+k+v+kaeg++v++  
   KIR65206.1 11 IGDVTEGDDLAALIATAAP----WLRDGDVLVVTSKIVSKAEGRLVDVPA 56
                 56899**********9999....79*********************9865 PP

  == domain 2  score: 121.6 bits;  conditional E-value: 1.8e-39
                  -EEEE........TTS-EEEGGG-B-TTS-TTEEE---S-HHHHHHHHHHHHHHHHS---EEEE..EEEEEETTEECEEEEEEEEESB-SEEE-TT-B CS
  F420_ligase 108 lideky.tdevlvklGllgsnagidesnveegllkllPedpdksaeeikkklkertgkdveVliygkDpegriweladpvvaigtsglealrdlrgkk 204
                  ++  ++ t  v +++G++++ agid+snv+++ l+llP+dpd+sa++++++l+er+++dv+V++  +D+ gr+w+ + ++va+g++g++a+rd rg+ 
   KIR65206.1  76 VVATRGaTRIVQTHHGFVMASAGIDASNVDKTRLVLLPQDPDASARALRAALRERYDVDVAVIV--TDTMGRPWRNGLTDVALGVAGMPAIRDHRGEV 171
                  33333325555669**************************************************..******************************** PP

                  -TTS-B-S--EEEHHHHHHHHHHHHC-SSSS---EEEEES CS
  F420_ligase 205 dldgkelgttpravtdelgsladLvsGsadegtPvvlvrg 244
                  d +g+el+ t+ av+del+ + +L+ G+  +++Pv++vrg
   KIR65206.1 172 DPYGNELQLTQMAVVDELAGAGELIKGKC-DQVPVAVVRG 210
                  ****************************9.689******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2837.08
//
Query:       KIR65207.1  [L=317]
Description: 2-phospho-L-lactate transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-62  211.0   0.0    2.6e-62  210.7   0.0    1.0  1  UPF0052   Uncharacterised protein family UPF0052


Domain annotation for each model (and alignments):
>> UPF0052  Uncharacterised protein family UPF0052
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.7   0.0   1.5e-66   2.6e-62       1     257 [.       3     283 ..       3     293 .. 0.92

  Alignments for each domain:
  == domain 1  score: 210.7 bits;  conditional E-value: 1.5e-66
                 EEEEE-CHHHHHHHHHHCCSS....CEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH...--S-C..........HHHHHCH-B-SS...... CS
     UPF0052   1 vvvlgGGtGlskllrglkevt....aeltavvtvaDdggssGelrrelgllaigDirnvlval...idder..........lleeLfqyRfkg...... 76 
                 +vvl+GG+G++++l g++++     a +tavv+v+Dd  ++G       l +++D+++v+++l   +d er          +++eL++y   g      
  KIR65207.1   3 IVVLAGGIGGARFLLGVRAYArevgAGVTAVVNVGDDLYLHG-------LKVCPDLDSVMYTLgggADAERgwgradetwtVKSELAAY---Gaeptwf 91 
                 8********************999899***************.......*****************99999*********99*******...4456*** PP

                 ...SSSSTT-BHHHHHHHHHHHHHS.-HHHHHHHHHHHTT-SSEEEES-SS--EEEEEETTS-E.....EE.STTTGGGG-S....-EEE.EEEESTT- CS
     UPF0052  77 ...dgdlaghslgnllLaalaeltg.sleeaiealskilkvrgrvlPatddpvelsaeledGee.....it.geskiseark.lkapikr.vflepega 163
                    d+d+a+h++++ +L++     g +l++++eal++++++++rvlPatdd++e++++++d +      i+ +e++i   r+ +  p++r vf+++e+a
  KIR65207.1  92 glgDRDVATHLVRTTMLTG-----GyPLSAVTEALATRWQPGVRVLPATDDRLETHVVVSDPDGggqraIHfQEWWI---RYrAGIPTHRfVFVGAEAA 182
                 *******************.....99*********************************8866666778********...777889************* PP

                 ---HHHHHHHHH-SEEEE-SS-IIIIIHHHHTSCCHHHHHHH-SSEEEEE--SB--TTTSTT-BHHHHHHHHHHCH-..........SS....S..... CS
     UPF0052 164 eaapevleaikeAdlivlgpGslytSiiPiLlvpgiaealreskakkvlvsnimtqkGetdgfsvsdhvkaieravg..........kgvakay..... 247
                 ++ap+vl+ai++Ad+++++p+++++S+ P+L+vpg++eal++  a++++vs+i++      g++v+++++++++ +g                y     
  KIR65207.1 183 KPAPGVLDAIAAADVVLVAPSNPVVSVAPVLAVPGLREALADGPAPVIGVSPIIG------GAAVRGMADRCLAVLGvecsaagvgaL-----Ygarss 270
                 ******************************************************9......****************98888554440.....355555 PP

                 ...-SEEEEE-S- CS
     UPF0052 248 ...vdavlvntse 257
                    +d +lv  ++
  KIR65207.1 271 gglLDGWLVAPED 283
                 5669***997664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2215.85
//
Query:       KIR65208.1  [L=359]
Description: hypothetical protein TK50_06920 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2577.15
//
Query:       KIR65209.1  [L=852]
Description: FO synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-27   97.4   0.0    2.9e-14   53.8   0.0    2.7  3  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.63   1.1e+04     123     143 ..      39      59 ..      16      67 .. 0.72
   2 !   40.8   0.0   1.6e-14   2.8e-10       2     164 ..      76     253 ..      75     256 .. 0.93
   3 !   53.8   0.0   1.6e-18   2.9e-14       1     152 [.     548     708 ..     548     722 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.63
                  CTSHHHHHHHHHHHHHHTTSE CS
                  xxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 123 rghtfeevlealeklreagik 143
                  rg  ++e+l++   +r+ag++
   KIR65209.1  39 RGAALDELLRVAGDIRDAGLR 59 
                  667777778888888888776 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 1.6e-14
                  EEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTC.............CCTEEEEEEEC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekg.vkevilgggepllypdfvellerlakla.............vpgiritvetn 85 
                  + tr C+ rC++C++ + v  + ++++l+ +e+l++++++ a +g ++ ++ +g+ p  +++ +++++ ++  +              ++  +    n
   KIR65209.1  76 PLTRLCRDRCHYCTFAT-VPHRLPAAFLDRDEVLAIARQG-AAQGcKEALFTLGDRPEERWPAAREWLDARGYDstldylracavavLEETGLLPHLN 171
                  789*************9.699*******************.899999999999*******99999999999999999999999988999999999999 PP

                  SSCHGHHHHHHHHHTT-SEEEEEEBSSSHH....HHHHHHT.CTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  86 gtlpdeeklerllelgvdrvslgleaadde....kvlklmn.rghtfeevlealeklreagikrvvdrivglpGendeeleell 164
                  ++++++  l+rl++     + + le++  +    +   +++ + +++  +l++l+ + ++g++  +++i+++ Ge+ +e+++ l
   KIR65209.1 172 PGVLSWSELQRLKPVA-PSMGMMLETTATRlwsePGGPHFGsPDKEPAVRLRVLDDAGRVGVP-FTTGILIGIGETPAERVDAL 253
                  99999*********88.*************99999999999999*******************.**************998876 PP

  == domain 3  score: 53.8 bits;  conditional E-value: 1.6e-18
                  EEEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHG....... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
  Radical_SAM   1 vvvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekg.vkevilgggepllypdfvellerlaklavpgiritvetngtlpd....... 90 
                  +++++ C  +C+fCa+ +  +r  +++ lsv+++++ ++e+ +  g ++++++gg +p l    + +l r++k +vpg++++  ++   ++       
   KIR65209.1 548 INFSNVCYVGCRFCAFAQR-ERDADAYRLSVDQVADRAEEA-WAAGaTEVCLQGGIDPKLPVTGYADLIRAIKARVPGMHVHAFSPMEIVTaaakagv 643
                  6899**************6.999999***************.*******************************99*********************** PP

                  ..HHHHHHHHHTT-SEE.EEEEBSSSHHHHHHHHT.CTSHHHHHHHHHHHHHHTTSETEEEEEEEB CS
                  ..xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  91 ..eeklerllelgvdrv.slgleaaddekvlklmn.rghtfeevlealeklreagikrvvdrivgl 152
                    +e+l  l+e+g+d++    +e++dde v+  +  ++    +++e++ +++e+gi++++++++g+
   KIR65209.1 644 pvKEWLTGLREAGLDTIpGTAAEILDDE-VRWVLTkGKLPAAAWVEVVSTAHELGIRSSSTMMYGH 708
                  *************666616667777777.888887788999****************755555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5737.50
//
Query:       KIR65210.1  [L=91]
Description: hypothetical protein TK50_06930 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 702.53
//
Query:       KIR65211.1  [L=464]
Description: hypothetical protein TK50_06935 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     7e-145  483.4   0.0   7.9e-145  483.2   0.0    1.0  1  DUF4331   Domain of unknown function (DUF4331)


Domain annotation for each model (and alignments):
>> DUF4331  Domain of unknown function (DUF4331)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  483.2   0.0  4.4e-149  7.9e-145       1     417 []       2     453 ..       2     453 .. 0.93

  Alignments for each domain:
  == domain 1  score: 483.2 bits;  conditional E-value: 4.4e-149
     DUF4331   1 SsHreapliakdpaadltDlYaFrspdradtvtlianyiPlqepsggpnyykfsenarYeihidndgdakeDltyrftFsteekdnktfllntg..esl 97 
                 SsHreap iakdp ad++DlYaF+spdr+d+vtliany+Plq+psggpn+++f++++rYeihidndgd+k+D+tyrf+F+te +++++fl+ntg  esl
  KIR65211.1   2 SSHREAPEIAKDPVADSSDLYAFVSPDRPDSVTLIANYVPLQLPSGGPNFFEFGDDVRYEIHIDNDGDGKPDVTYRFEFTTEITNPNSFLYNTGpiESL 100
                 9**********************************************************************************************9666 PP

     DUF4331  98 ...nlnvkqtytlevirkkgksstvllrdaavaptniGeksipdYealaaqaitklvpggsglkvFaGqrdDpFfvdlgqvFdlln..........gpa 183
                    n+n kq y+l++i +++++   l+++ a++p+n+G+ s+p+Y+ala+qa+++l   ++g+kvFaGqr+D+Ffvdlg++Fdl++          g +
  KIR65211.1 101 dskNWNRKQFYSLTRIADGREH--RLANKLACPPCNVGPLSTPNYAALARQATFSL---STGEKVFAGQRADGFFVDLGAIFDLGTlrpfqqlhvaG-K 193
                 677*************655554..6899****************************...67***********************99******99964.5 PP

     DUF4331 184 agfrlseaardtlagyNVnsialevpksllqkkg....saarnpviGvwatasrrqarll.kakgkete.GafvqvsRlgnPlvnevviplkdkdafna 276
                 + f+   + +++++++NV+++a++vp s ++++     ++ r  viGvw++asr+qar+l + ++k t  G+fvqvsRlgnPl+nev++p+ +kd++n+
  KIR65211.1 194 KLFKAEGEPVNATDRMNVHTLAVQVPLSRVRRRAnrygTHDRASVIGVWTSASRQQARILgNGSAKDTAtGPFVQVSRLGNPLFNEVIVPMSKKDEWNT 292
                 56677779**********************98767766667777****************9555555556***************************** PP

     DUF4331 277 stPkddaqfadyvtnPelpalleava........klpapakprsdLvevFltGi.....eglnadknvtpadvlRlntavpstaaaeqsrlgvlggdla 362
                 ++P++d++fa++v++Pel+all +++        +l++ +kpr+dL++++ltGi     +g  +++  ++ad+lRlnta+ + a+++  r+gvlggdla
  KIR65211.1 293 LPPTEDKRFAKFVEQPELAALLPVLYpgvfpkldALNKTKKPRADLLAILLTGIpagliQGFSNNTGDVQADMLRLNTAIRPSAKPD--RFGVLGGDLA 389
                 ************************99999999988899999*************9666666666668889************99999..********** PP

     DUF4331 363 GfPnGRrlkdDVvdielqvvegalva........llaalaltdgveand.akpllktFPYlalP 417
                 GfPnGRr++dDVv i+l++++g++v+        ++aa a+t+g++a+d ++p+l++FP+l +P
  KIR65211.1 390 GFPNGRRVADDVVSIALRAIAGVTVPlvdkgftpDAAAGAVTPGLSAADvTAPFLRNFPFLGTP 453
                 *************************999999999899999********999**********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3568.43
//
Query:       KIR65212.1  [L=116]
Description: phospholipase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 782.09
//
Query:       KIR65213.1  [L=85]
Description: transcription factor WhiB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-27   95.1   2.0    3.4e-27   94.8   2.0    1.1  1  Whib      Transcription factor WhiB
  ------ inclusion threshold ------
      0.015   15.1   0.1      0.021   14.6   0.1    1.2  1  RecO_C    Recombination protein O C terminal


Domain annotation for each model (and alignments):
>> Whib  Transcription factor WhiB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   2.0   3.7e-31   3.4e-27       1      64 []      17      80 ..      17      80 .. 0.99

  Alignments for each domain:
  == domain 1  score: 94.8 bits;  conditional E-value: 3.7e-31
        Whib  1 WreraaCrgedpelffpekgdreeeAkavCarCpVrreCleealeegeeyGvwGGltereRraL 64
                W+e+a C ++dpe+ffpekg +++eAk++C+rC+V++eCle+al ++e++G+wGGl+ereRr+L
  KIR65213.1 17 WQEQALCSQTDPEAFFPEKGGSTREAKRICSRCEVKTECLEYALGHDERFGIWGGLSERERRKL 80
                **************************************************************87 PP

>> RecO_C  Recombination protein O C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   2.3e-06     0.021      56      98 ..       5      52 ..       3      60 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.3e-06
                HHHHHHTTS----SB-TTT--BS--EE-TTT...........SSEE-TT CS
      RecO_C 56 lrlLallGyapdldsCaacgekialaafspswgg......llcsecaak 98
                l   +llG ap++++ a c +++++a f   +gg       +cs+c +k
  KIR65213.1  5 LEVADLLGNAPEWQEQALCSQTDPEAFFP-EKGGstreakRICSRCEVK 52
                667899**************997777665.5565688888777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 615.90
//
Query:       KIR65214.1  [L=149]
Description: hypothetical protein TK50_06950 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-13   48.4   0.1    1.3e-12   47.6   0.1    1.4  1  Zincin_1  Zincin-like metallopeptidase


Domain annotation for each model (and alignments):
>> Zincin_1  Zincin-like metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.1   7.3e-17   1.3e-12       1      91 [.      62     148 ..      62     149 .] 0.84

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 7.3e-17
                 --EEEEESS--B-TTS.....TT-B-.-EEEE---S-BTTB-...-GGG--EEEEEHHHHHHH--TT--HHHHHHHHHHHHHHHHHTT-HHHH CS
    Zincin_1   1 lenvavlvedkpdeevleelledepellGlyegvpltersaed..agslpdrivlyrrpllavaetreeleeevretllHEighhfGlddedl 91 
                 l++v+++ved+p++  +    ++++   G    vpl++  +++   +++p+rivlyrrpl+ +a +re+l+++v+++++++++ ++G+d ++l
  KIR65214.1  62 LAGVEFAVEDVPPDLNV---YDSDVLEDG---EVPLARLLPGRpgRQEVPPRIVLYRRPLEFRAMDREDLADLVHDVIIEQVANLLGVDPDEL 148
                 689********975332...333333345...89999999986458899******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 967.87
//
Query:       KIR65215.1  [L=126]
Description: hypothetical protein TK50_06955 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-48  163.8   0.4    2.7e-48  163.7   0.4    1.0  1  DUF3499   Protein of unknown function (DUF3499)


Domain annotation for each model (and alignments):
>> DUF3499  Protein of unknown function (DUF3499)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.7   0.4   1.5e-52   2.7e-48       2     123 ..       5     123 ..       4     124 .. 0.86

  Alignments for each domain:
  == domain 1  score: 163.7 bits;  conditional E-value: 1.5e-52
     DUF3499   2 RrCsrpgCsrpAvatltyvYadstavlGPLataaephsyDLCeeHaerltaPrGWelvrleeelaeaepdeddlvALAdavreaaeeereeeaepepae 100
                 RrCsr+gC r+AvatltyvY++stav+GPLa++aeph+yDLCe Ha+ ltaPrGW++vr+e e+++  p++ddlvALA+avreaa+ +   +++p+ ++
  KIR65215.1   5 RRCSRNGCPRQAVATLTYVYNESTAVVGPLAAFAEPHTYDLCEPHARSLTAPRGWNVVRHEGEFEPPPPSADDLVALAEAVREAARPA--PPRPPSDDQ 101
                 9***********************************************************************************9643..333344434 PP

     DUF3499 101 eakreeeekatesrrrghLrvlr 123
                   + +++++++++r rghLrv++
  KIR65215.1 102 GGAPQHHHNPQTGR-RGHLRVIP 123
                 44444444555565.******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 868.32
//
Query:       KIR65216.1  [L=458]
Description: FAD-dependent oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-56  192.3  17.4    2.1e-56  192.0  17.4    1.1  1  DAO             FAD dependent oxidoreductase
    7.5e-08   31.9   0.4    1.4e-07   31.0   0.4    1.3  1  Thi4            Thi4 family
    0.00011   21.5   0.0      0.015   14.5   0.0    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00038   20.6   0.3    0.00038   20.6   0.3    2.7  4  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0086   16.6   0.0       0.82   10.3   0.1    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
       0.02   14.0   0.1      0.085   11.9   0.1    2.1  2  Lycopene_cycl   Lycopene cyclase protein
       0.13   11.1   0.6        0.4    9.5   0.2    1.8  2  Trp_halogenase  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.0  17.4   8.4e-60   2.1e-56       1     352 []      30     394 ..      30     394 .. 0.84

  Alignments for each domain:
  == domain 1  score: 192.0 bits;  conditional E-value: 8.4e-60
                 EEEEECTSHHHHHHHHHHHHTT....EEEEESSSSTTSSGGGSSEEEEESSS.....STHHSTH..........HHHHHHHHHHHHH.HHHHHHHSSTT CS
         DAO   1 dvviiGGGiiGlstAyeLarrg....VtllekgdiagsgaSgrnsgllhsgl.....rylpeas..........elarlslealeel.releeelgidi 79 
                 dvvi+G+G++Gl+tAy+La +     +t+le++ iag gaSgrn+g++++ +     +                ++ r ++++++e  r  ++e gid+
  KIR65216.1  30 DVVIVGAGYTGLWTAYYLALADpalrITVLEAE-IAGYGASGRNGGWCSALFptslpA-----LarrhgrdaalRMQRAMQATVREVgRVADAE-GIDC 121
                 9******************875599********.****************88654441.....24555677777888999999****6666666.**** PP

                 SEEEEEEEEEESSHHHHHHHHHHHHHHHHTTT..TE.EEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEE CS
         DAO  80 dyrrtGllslaadeeelealdkllallleagl..da.elldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleee 175
                 d++  G++ la+++++l + ++++a+++++gl  d   llda+e+++++   +g++g+ ++p++++v+pa+l+++lara+e++Gv+++e+t+vt++++ 
  KIR65216.1 122 DWHLGGTVTLARSAAQLGRARAEVAQAHAHGLtaDDlVLLDAAEAAARCH-ADGVRGGTYTPHCAVVHPARLARGLARAVERRGVTVHERTPVTAIRA- 218
                 ************9999***********989997644257***99*****7.569******************************************54. PP

                 ETCEEEEEEECT.EEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE..EEETTTTEEEEEETTSEEEEEESSE. CS
         DAO 176 dgkvwgverttp.gendaadavVnaaGawsdllgllkeldlpispvrgqvlvlkplseklvspaailpvpe..tdddgrgvyvtprkdgrvlvGgtad. 270
                    ++ v   tp g+++a   vV a+  ++  l   +  ++ + pv + +++++pl+e++ + + +l+++e  +d+++  +y  +++dgr+ +Gg +  
  KIR65216.1 219 ---GAAV---TPaGAVRA-PVVVRATEGYTPGL---PGQRRVVAPVYSLMVATAPLPEETWA-RIGLAEREtfSDHRHVIIYGQRTADGRLAFGGRGAp 306
                 ...5566...66698533.56********9877...7777889***************7755.58999999666666666677778*******999965 PP

                 EETTCSS.....TSCSHHHHHHHHHHHHHHSGGG...CGEEEEEEEEEEE.TTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHHH CS
         DAO 271 eesgddd.....pevdeedidellealrklfPql...gdvlrkwaGlrpl.pdglpligetpgvkglylatGhsghGltlapatGkllael 352
                 +  ++++     ++ +++ +++l++ l +lfP+l    +v+++w G +   +d    +g   +  gl  a G+ g G+ +  ++G+ la+l
  KIR65216.1 307 Y--HFGSrvrpeFDREPRVFAALRRTLGELFPALgpqVPVTHTWGGPLGVaRDWSASVGLD-RATGLAWAGGYVGDGVATTNLAGRTLADL 394
                 2..3333224444556669999***********84445599*****999548998888884.478************************97 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.4   5.4e-11   1.4e-07      16      61 ..      27      73 ..      24      82 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 5.4e-11
                TEEEEEEE--SHHHHHHHHHHHHC.TTS-EEEEESSSS--TTTTTTS CS
        Thi4 16 aesDvvivGaGssGLtaayylakk.pdlkvailersvspGGGawlGG 61
                a++DvvivGaG +GL +ayyla + p l++++le++++  G ++  G
  KIR65216.1 27 ADADVVIVGAGYTGLWTAYYLALAdPALRITVLEAEIAGYGASGRNG 73
                679*******************999************9777665444 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.9e-06     0.015     143     173 ..      29      61 ..      10      70 .. 0.76
   2 !    4.7   0.0    0.0057        14     175     213 ..     182     220 ..     161     247 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.9e-06
                  SEEEEES-SHHHHHHHHH..HHHHT-EEEEEES CS
                  xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaa..laklgkevtlvea 173
                  +++v+vG+Gy+G+ +A +  la+ + ++t++ea
   KIR65216.1  29 ADVVIVGAGYTGLWTAYYlaLADPALRITVLEA 61 
                  789999999999999999333555778888887 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0057
                  SSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 175 drllraldkelsaaleealekeGvevklgtsvkeidgng 213
                  +++   ++ +l++ l++a+e++Gv+v+ +t v++i++  
   KIR65216.1 182 PHCAVVHPARLARGLARAVERRGVTVHERTPVTAIRAGA 220
                  55556789999*******************999998655 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.3   1.5e-07   0.00038       1      42 [.      33      74 ..      33      93 .. 0.85
   2 ?   -2.4   0.0       2.3   5.9e+03      28      39 ..     122     133 ..     116     155 .. 0.66
   3 ?   -2.8   0.1         3   7.6e+03      22      30 ..     158     166 ..     125     204 .. 0.59
   4 ?   -1.5   0.0       1.2   3.2e+03      31      54 ..     300     326 ..     295     335 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.5e-07
                   EE--SHHHHHHHHHHHCC..TEEEEEE-SSSSSSGGG-EECETT CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka..gfdvlllekrdrlGGraasyevpg 42
                   IvGaG +Gl +Ay+La a   +++++le+   + G  as +++g
     KIR65216.1 33 IVGAGYTGLWTAYYLALAdpALRITVLEAE--IAGYGASGRNGG 74
                   9**************9876678*****996..999999998887 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.3
                    SSSSSGGG-EEC CS
  NAD_binding_8  28 rdrlGGraasye 39 
                     ++lGG ++ ++
     KIR65216.1 122 DWHLGGTVTLAR 133
                    678888776554 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3
                    EEEE-SSSS CS
  NAD_binding_8  22 vlllekrdr 30 
                     +ll++++ 
     KIR65216.1 158 LVLLDAAEA 166
                    444444444 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.2
                    SSGGG-EECETT...CEECTS---EEE CS
  NAD_binding_8  31 lGGraasyevpg...vrvdygahifhg 54 
                    +GGr a y+++      +d  +++f+ 
     KIR65216.1 300 FGGRGAPYHFGSrvrPEFDREPRVFAA 326
                    799999999976566778888888876 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00032      0.82       2      30 ..      31      61 ..      30      64 .. 0.83
   2 ?    3.7   0.0     0.036        93      42      69 ..     192     219 ..     186     228 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00032
                EEEECSSHHHHHHHHHH..HHTTSEEEEEES CS
   Pyr_redox  2 vvvvGgGyiglElAgal..aelgkkVtvver 30
                vv+vG+Gy+gl  A +l  a+ + ++tv+e+
  KIR65216.1 31 VVIVGAGYTGLWTAYYLalADPALRITVLEA 61
                8*************99965667788888876 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHTTEEEECSEEEEEEEEE CS
   Pyr_redox  42 askilqeklekngievllntkveeiegs 69 
                 +++ l++ +e++g++v+  t v++i+  
  KIR65216.1 192 LARGLARAVERRGVTVHERTPVTAIRAG 219
                 667788999***************9865 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.3e-05     0.085       1      33 [.      30      62 ..      30     108 .. 0.89
   2 ?   -2.3   0.0      0.69   1.8e+03     118     142 ..     282     306 ..     270     313 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.3e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieas 33
                   Dvv++GaG  gl  A  l+ a p+l+++++ea 
     KIR65216.1 30 DVVIVGAGYTGLWTAYYLALADPALRITVLEAE 62
                   9*****************************985 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.69
  Lycopene_cycl 118 geslvvleggrkirarlvvdargla 142
                     ++ v++ g r+ ++rl++ +rg++
     KIR65216.1 282 DHRHVIIYGQRTADGRLAFGGRGAP 306
                    57899999***************86 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00016       0.4       1      36 [.      30      64 ..      30      72 .. 0.87
   2 ?   -0.8   0.0      0.21   5.3e+02     153     178 ..     189     214 ..     153     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00016
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseei 36
                    ++vivG+G  G  +A +la a    l++t++e+e  
      KIR65216.1 30 DVVIVGAGYTGLWTAYYLALADPA-LRITVLEAEIA 64
                    69*****************99944.*******9855 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.21
                     HHHHHHHHHHHHHHCT-EEEE--EEE CS
  Trp_halogenase 153 aalyakfLrrvaearGvtrvegkvve 178
                      a++a+ L r  e+rGvt+ e + v+
      KIR65216.1 189 PARLARGLARAVERRGVTVHERTPVT 214
                     5789999***********99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3513.44
//
Query:       KIR65217.1  [L=448]
Description: hypothetical protein TK50_06965 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-96  322.1   0.0      5e-96  321.8   0.0    1.0  1  Aminotran_3      Aminotransferase class-III
  ------ inclusion threshold ------
      0.031   13.4   0.0       0.04   13.0   0.0    1.3  1  FAD_binding_2    FAD binding domain
      0.031   13.6   0.0      0.047   13.0   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
        0.2   12.0   0.0       0.49   10.8   0.0    1.6  1  Fer2_BFD         BFD-like [2Fe-2S] binding domain


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.8   0.0   1.1e-99     5e-96      12     405 ..      25     440 ..      17     441 .. 0.94

  Alignments for each domain:
  == domain 1  score: 321.8 bits;  conditional E-value: 1.1e-99
                  EEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHHHH CS
  Aminotran_3  12 vitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKlark 109
                   i ++eG+y++d +g+rylD +++  vvn Gh   ++++a+++qa +l +  +  +++ +a++laek+++l+p +l++vf+ + GseAve+A Klar+
   KIR65217.1  25 TIVRGEGAYVWDSQGRRYLDGLAGLFVVNAGHGRTELAEAAAKQAGELAYFPLWSYAHPKAVELAEKIASLTPADLNRVFFTTGGSEAVEAAWKLARA 122
                  689*********************************************************************************************** PP

                  HHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHH....HHHHHHHHH.CHTCCCEEEEEE-SCE CS
  Aminotran_3 110 yarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaa....lleeleale.kkkkdevaAvivEpiq 202
                  y + +++++k k+++   a+HG  +gals+tg  +++kt+f+p++p+ v+++    ++++e++++ +a    ++ee+++ + ++  d+vaAv +Ep+q
   KIR65217.1 123 YFKRTGKPNKYKVVSRYIAYHGTSMGALSITGL-PGIKTDFEPLVPGAVKVPNTNLYRAPEHGDSPEAfgrwAAEEIRRAIeREGPDTVAAVFLEPVQ 219
                  *********************************.********************99****99977665222245566555459999************ PP

                  TTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTS....B--TTTT-H CS
  Aminotran_3 203 gegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgs....hgsTfgGnp 295
                    gG ++++p++++++re+c+ +dvll+ DEv +  Gr G+ f++  +g  pD++t+aK++t+G  pl a++a + +m+ + ++     hg TfgG p
   KIR65217.1 220 NSGGCFPPPPGYFERVREICDAYDVLLVSDEVICSWGRLGEYFGAVRYGYRPDIITTAKGITSGyAPLGAMIASDRLMEPFLTETgmfaHGVTFGGHP 317
                  ****************************************************************99***************888799*********** PP

                  HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC............HHHHHHHHHCTEE-EE..ETT CS
  Aminotran_3 296 lacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke............keilkkakekGvlils..aGd 379
                  + cavala le++++e+l+ ++++ ++a+++ Le+l++ +  +++vRg G + +iel++++ ++               + +++  +G++++    Gd
   KIR65217.1 318 VSCAVALANLEVFAREDLIGHVRANEDAFRATLEKLHDLP-IVGDVRGDGYFYGIELVKDKATRAtfdeaeserllrGFLSTALFSAGLYCRAddRGD 414
                  *************************************999.*******************997779******99995334566779*****9633788 PP

                  TEEEE---TT--HHHHHHHHHHHHHH CS
  Aminotran_3 380 nvirllppliitdeeidelleilkka 405
                   v++l+ppli ++++ de+ +il ++
   KIR65217.1 415 PVVQLAPPLIAEQQQFDEMEQILRAV 440
                  *******************9999876 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.9e-06      0.04     245     308 ..       5      65 ..       1     180 [. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.9e-06
                    TT-EEEEEEEET....TTTBB--THHHHTT-EEE-TTSSBTHGGGS-HHHHHHHHH.HHHHTTT CS
  FAD_binding_2 245 meevqfhPtslvpirdgsgiLitealrgeGgilvdkdGrrFmnelasrdvvsrailekeiaegg 308
                     +++++h t +  +  g+     +++rgeG++++d++Grr+   la  +vv++ + ++e ae  
     KIR65217.1   5 TDHLWMHFTRMASYSAGEVP---TIVRGEGAYVWDSQGRRYLDGLAGLFVVNAGHGRTELAEAA 65 
                    68999999999977677666...88*****************5555555555544444444333 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     1e-05     0.047     106     167 ..     182     249 ..      84     251 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1e-05
                      T........TBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 106 a........GkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                      +        G   +e++++ai+++g   + ++++ l+   n+ g  + ++ + ++v++i+++y++ l+ D
       KIR65217.1 182 EhgdspeafGRWAAEEIRRAIEREGP--DTVAAVFLEPVQNSGGCFPPPPGYFERVREICDAYDVLLVSD 249
                      1455555679999**********999..*************988889999***************99988 PP

>> Fer2_BFD  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.49      11      38 ..     196     224 ..     193     225 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
    Fer2_BFD  11 geIrdairraglttveevk.rrtkagtgC 38 
                 +eIr+ai+r+g  tv++v  + ++ ++gC
  KIR65217.1 196 EEIRRAIEREGPDTVAAVFlEPVQNSGGC 224
                 79*****************7778888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3200.61
//
Query:       KIR65218.1  [L=256]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.077   13.2   0.1       0.18   12.0   0.1    1.7  1  HTH_17    Helix-turn-helix domain
      0.086   12.9   0.0       0.16   12.0   0.0    1.5  1  HTH_35    Winged helix-turn-helix DNA-binding
       0.67   10.3   7.2        0.3   11.5   3.0    2.5  2  HTH_31    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.1e-05      0.18      12      31 ..      25      44 ..      16      55 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.1e-05
      HTH_17 12 gvsrstvyrlirrgelpaak 31
                +v ++t+ r++++g++p+a+
  KIR65218.1 25 RVDPKTAGRWVSQGRIPHAR 44
                799**************996 PP

>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.7e-05      0.16      42      66 ..      44      68 ..      14      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.7e-05
      HTH_35 42 kgEalIAeaLgvppeeiwPsRYekd 66
                ++  ++A++Lg +++e+wP+ ++ +
  KIR65218.1 44 RTRLAVAKVLGREAAELWPEPFRRR 68
                55679**************988876 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.0   4.9e-05       0.3       5      60 ..       5      59 ..       4      61 .. 0.93
   2 ?   -1.1   0.1      0.41   2.5e+03      23      24 ..     105     106 ..      70     137 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.9e-05
      HTH_31  5 lLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpae 60
                +Lr + ++ G + e +A+ ++v + t +r+ +  r +p  ++  a+a +lg + ae
  KIR65218.1  5 TLRVAMAAVGETAESLAGKVRVDPKTAGRWVSQGR-IPHARTRLAVAKVLGREAAE 59
                79999***************************999.7*************987776 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.41
      HTH_31  23 rl 24 
                 r+
  KIR65218.1 105 RA 106
                 33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1740.65
//
Query:       KIR65219.1  [L=170]
Description: AsnC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-15   55.8   0.5    2.8e-15   55.8   0.5    2.4  2  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    3.1e-12   46.3   0.9    4.9e-12   45.6   0.3    1.5  2  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    2.2e-10   39.9   0.4    9.8e-10   37.8   0.0    2.2  3  HTH_24          Winged helix-turn-helix DNA-binding
    7.1e-05   22.7   0.2     0.0002   21.2   0.0    1.8  2  HTH_11          HTH domain
    0.00016   21.6   0.5      0.013   15.6   0.1    2.9  3  HTH_20          Helix-turn-helix domain
    0.00028   20.4   0.1    0.00067   19.1   0.1    1.7  1  Sigma70_r4      Sigma-70, region 4
  ------ inclusion threshold ------
      0.034   14.0   2.4       0.46   10.4   0.4    2.9  3  MarR_2          MarR family
       0.05   13.7   0.5       0.12   12.5   0.1    1.9  2  HTH_28          Helix-turn-helix domain
      0.063   13.0   0.0       0.12   12.1   0.0    1.5  1  Sigma70_r4_2    Sigma-70, region 4
      0.079   13.0   0.4       0.43   10.7   0.1    2.2  2  NapD            NapD protein
      0.092   12.9   0.0       0.18   11.9   0.0    1.4  1  HTH_9           RNA polymerase III subunit RPC82 helix-turn-h
      0.096   13.1   0.0       0.14   12.5   0.0    1.3  1  Lipase_GDSL_2   GDSL-like Lipase/Acylhydrolase family
      0.099   13.2   0.0       0.25   11.9   0.0    1.8  1  ACT_4           ACT domain


Domain annotation for each model (and alignments):
>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.5     2e-18   2.8e-15       1      41 [.      26      66 ..      26      67 .. 0.98
   2 ?    1.0   0.4      0.28   3.9e+02       5      14 ..     133     142 ..     132     143 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 2e-18
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrL 41
                   LD++ ++I+e Lqed+R++ya ++++vGlSe++v++Rv+rL
     KIR65219.1 26 LDDVAKQIIEQLQEDGRRPYATIGKAVGLSEAAVRQRVQRL 66
                   89999***********************************9 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.28
  HTH_AsnC-type   5 DrkILeaLqe 14 
                    D  +Le+Lq+
     KIR65219.1 133 DAHLLEILQR 142
                    899******7 PP

>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       7.6   1.1e+04       9      20 ..      21      33 ..      15      37 .. 0.56
   2 !   45.6   0.3   3.5e-15   4.9e-12       2      74 ..      92     159 ..      90     159 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 7.6
                    G.TTHHHHHHHHH CS
  AsnC_trans_reg  9 h.peqleefeeal 20
                    + ++ l+++++++
      KIR65219.1 21 AsHALLDDVAKQI 33
                    4445566666655 PP

  == domain 2  score: 45.6 bits;  conditional E-value: 3.5e-15
                     EEEE-GGGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEE CS
  AsnC_trans_reg   2 lvslepghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivle 74 
                     +++++ g+   le+++++lae++eV  +  ++G++d+l++vv+r+ ++l ++l++ l++++gv  te ++ l+
      KIR65219.1  92 GLRTD-GD---LETVADRLAEFEEVDYVVITAGSFDLLAEVVCRNDAHLLEILQR-LRAVDGVLATEAFVYLK 159
                     55666.77...******************************************99.***********999886 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   7.1e-13   9.8e-10       1      46 [.      26      71 ..      26      71 .. 0.97
   2 ?   -1.5   0.0       1.4   1.9e+03      33      47 ..     101     115 ..      99     116 .. 0.82
   3 ?   -2.2   0.1       2.4   3.2e+03       8      14 ..     136     142 ..     132     145 .. 0.57

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 7.1e-13
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGl 46
                ld+  ++I+e Lq+++r +++ + +++glS ++v++r++rL ++G+
  KIR65219.1 26 LDDVAKQIIEQLQEDGRRPYATIGKAVGLSEAAVRQRVQRLLDAGV 71
                688899**************************************97 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.4
      HTH_24  33 tvnrrlkrLeeeGlI 47 
                 tv  rl ++ee  ++
  KIR65219.1 101 TVADRLAEFEEVDYV 115
                 899999999996666 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.4
      HTH_24   8 ILelLqk 14 
                 +Le+Lq+
  KIR65219.1 136 LLEILQR 142
                 4555553 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.4e-07    0.0002       3      49 ..      31      77 ..      29      84 .. 0.93
   2 ?   -1.7   0.0       2.1   2.9e+03       2      11 ..     136     145 ..     135     152 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.4e-07
      HTH_11  3 lqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelg.vpIese 49
                +qi+e+L +++g  + +++ +  ++S+++vr+++++L ++g ++I+++
  KIR65219.1 31 KQIIEQL-QEDGRRPYATIGKAVGLSEAAVRQRVQRLLDAGvMQIVAV 77
                89*****.*********************************9999887 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.1
      HTH_11   2 llqilelLle 11 
                 ll il++L++
  KIR65219.1 136 LLEILQRLRA 145
                 5789999976 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   9.4e-06     0.013       5      53 ..      23      71 ..      19      79 .. 0.94
   2 ?    3.0   0.0     0.079   1.1e+02      35      55 ..      96     116 ..      87     120 .. 0.85
   3 ?   -1.4   0.0       1.8   2.5e+03      14      29 ..     138     153 ..     135     164 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.4e-06
                HHHS-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTT CS
      HTH_20  5 eALahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagL 53
                +AL++ v   i   L +++ +  + + ++++ls + ++++++ L +ag 
  KIR65219.1 23 HALLDDVAKQIIEQLQEDGRRPYATIGKAVGLSEAAVRQRVQRLLDAGV 71
                79*********************************************96 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.079
                 TS-HHHHHHHHHHHHHCTTEE CS
      HTH_20  35 dlskntlsyHLrvLeeagLve 55 
                 d++  t+ ++L++ ee+++v 
  KIR65219.1  96 DGDLETVADRLAEFEEVDYVV 116
                 788899************985 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.8
                 HHHHHHSTCTTB-HHH CS
      HTH_20  14 rilraLaraegltase 29 
                 +il+ L+  +g+ a+e
  KIR65219.1 138 EILQRLRAVDGVLATE 153
                 6888886666666655 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   4.8e-07   0.00067       5      46 ..      26      68 ..      24      69 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.8e-07
                S-HHHHHHHHHHH.TTT--HHHHHHHHTS-HHHHHHHHHHHHH CS
  Sigma70_r4  5 Lpererevlelrf.geglTleEIgerlgiSrerVrqiekrAlr 46
                L++  ++++e+   +  ++++ Ig+  g+S+ +Vrq+  r l+
  KIR65219.1 26 LDDVAKQIIEQLQeDGRRPYATIGKAVGLSEAAVRQRVQRLLD 68
                777789999999998889********************99886 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   0.00034      0.46      23      50 ..      44      71 ..      32      81 .. 0.83
   2 ?   -0.8   0.0         1   1.4e+03      37      57 ..     101     121 ..      86     124 .. 0.76
   3 ?    2.4   0.1       0.1   1.4e+02       4      31 ..     118     143 ..     115     166 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00034
                EHHHHHHHHTSSHHHHHHHHHHHHHTTS CS
      MarR_2 23 tvgelarrlglsksavsrilkrLvaaGL 50
                  + + ++ gls +av ++++rL +aG 
  KIR65219.1 44 PYATIGKAVGLSEAAVRQRVQRLLDAGV 71
                66789999******************96 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1
                 HHHHHHHHHHHTTSEEEEESS CS
      MarR_2  37 avsrilkrLvaaGLverrpgp 57 
                 +v  +l+++++  +v+ ++g+
  KIR65219.1 101 TVADRLAEFEEVDYVVITAGS 121
                 788899999999999887775 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.1
                 -HHHHHHHHHHHCTTTSEEEHHHHHHHH CS
      MarR_2   4 tpaqarvLaaLgrrpgrdltvgelarrl 31 
                 t   +++La++ +r +      e+ +rl
  KIR65219.1 118 TAGSFDLLAEVVCRNDA--HLLEILQRL 143
                 66679999999999984..444444433 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   8.8e-05      0.12       4      38 ..      32      68 ..      31      71 .. 0.89
   2 ?   -3.6   0.0       9.5   1.3e+04       1       6 [.     141     146 ..     138     151 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.8e-05
      HTH_28  4 eiiklla.aGh.svreaArelgisrrtvyrWikryee 38
                +ii++l+ +G+ +++ + +++g+s+  v++ ++r+  
  KIR65219.1 32 QIIEQLQeDGRrPYATIGKAVGLSEAAVRQRVQRLLD 68
                89*****77889*********************9865 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 9.5
      HTH_28   1 qRleii 6  
                 qRl+++
  KIR65219.1 141 QRLRAV 146
                 566665 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.5e-05      0.12      28      50 ..      44      66 ..      24      69 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.5e-05
                  -HHHHHHHHT--HHHHHHHHHHH CS
  Sigma70_r4_2 28 sykEIAellgisegtVksrlsRA 50
                  +y+ I +  g+se++V++r++R 
    KIR65219.1 44 PYATIGKAVGLSEAAVRQRVQRL 66
                  89*******************95 PP

>> NapD  NapD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.3   1.9e+03      37      58 ..      12      33 ..       5      38 .. 0.70
   2 ?   10.7   0.1   0.00031      0.43      13      68 ..      97     153 ..      94     158 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.3
        NapD 37 gklVvviEaesedeladtieai 58
                g+ V v E++s+  l d  ++i
  KIR65219.1 12 GRRVAVREGASHALLDDVAKQI 33
                7888888888887777776665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00031
        NapD  13 erlaavkaalaalpgvEvhasdee.gklVvviEaesedeladtieaiealpgVlsas 68 
                 ++l+ v+++la++++v++   ++    l   +   +   l++++++++a++gVl+++
  KIR65219.1  97 GDLETVADRLAEFEEVDYVVITAGsFDLLAEVVCRNDAHLLEILQRLRAVDGVLATE 153
                 7899*************99999954566666667777899**************985 PP

>> HTH_9  RNA polymerase III subunit RPC82 helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00013      0.18      10      46 ..      25      61 ..      23      70 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
                CSTTHHHHHHHHHHHHSSBEHHHHHHHHSSTHHHHHH CS
       HTH_9 10 hFGevvakVvetLlrkgrltlrelvkktkLsldqVkk 46
                ++++v+++++e L + gr++   + k+++Ls   V++
  KIR65219.1 25 LLDDVAKQIIEQLQEDGRRPYATIGKAVGLSEAAVRQ 61
                5899*******************************98 PP

>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0    0.0001      0.14      43     100 ..      92     146 ..      46     168 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0001
                    CH-H..HHHHHHHHCTGGG-T.SEEEEE--CCCCCTT--HHHHHHH..HHHHHHHHCCC CS
  Lipase_GDSL_2  43 Gattallrllerlrdllrlkp.dlvtiliGtNDlgrgvpaaaaaandnleelidalraa 100
                    G +t + +l+   ++l++++  d+v+i++G  Dl+++v      a+  l e++++lra 
     KIR65219.1  92 GLRT-DGDLETVADRLAEFEEvDYVVITAGSFDLLAEVVCRND-AH--LLEILQRLRAV 146
                    2344.33333333355666669************999888764.45..99*******98 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018      0.25      37      76 ..     112     150 ..      99     153 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
       ACT_4  37 vnaktrkkdglaeikitveVkdvehLsrviakLraipgVi 76 
                 v  +     g +++  +v  ++ +hL +++++Lra++gV 
  KIR65219.1 112 VDYVVIT-AGSFDLLAEVVCRNDAHLLEILQRLRAVDGVL 150
                 5555554.6799999***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1210.47
//
Query:       KIR65220.1  [L=394]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-28   99.1   0.5    4.9e-28   98.8   0.5    1.1  1  SBP_bac_8   Bacterial extracellular solute-binding protein
    1.7e-24   86.6   0.2    2.2e-24   86.2   0.2    1.1  1  SBP_bac_6   Bacterial extracellular solute-binding protein
    6.8e-16   59.1   0.5    9.4e-16   58.6   0.5    1.1  1  SBP_bac_1   Bacterial extracellular solute-binding protein
    0.00013   21.8   0.0    0.00019   21.2   0.0    1.4  1  SBP_bac_11  Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
      0.033   14.0   5.9       0.09   12.7   5.9    1.8  1  LPAM_2      Prokaryotic lipoprotein-attachment site
        9.8    6.2  11.0         36    4.4  11.0    2.0  1  TAT_signal  TAT (twin-arginine translocation) pathway signal 


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.5   1.6e-31   4.9e-28       4     279 ..      80     359 ..      78     362 .. 0.91

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 1.6e-31
                 HHHHHH-TEEEEEEE-..-SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GG..GSTTHHH..-HH.HHHTT--TS.----EEEEEEE- CS
   SBP_bac_8   4 kefekktgvkvnvvta..asndleqklkaalaagtapdidvvwanedalatlaeeglladls..dldnldd..ltd.alaavgydgklygvPyasetpy 95 
                 ++f +ktg++v++++   + n+   k++++laa +++  d+++  +  +a+++  g+++ l+  +++n +   l++   ++++ d    +vP++s+   
  KIR65220.1  80 DAFVAKTGIQVTYTEDinDNNEFFGKVQNQLAACQGTGRDIIVLTDWMAARMIRLGWIQKLDpaKIPNVAAnlLPSlLNRSFDPDS-RIAVPWQSGL-A 176
                 7999********888567889************999888999998899**************999999988877885556668888.999******7.7 PP

                 EEEEEHHHHHHS.---BHHHHHHHHHHHHHH-SEGG---GGGGGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE-.S..--SSTTTTTSBSEE CS
   SBP_bac_8  96 vliynkdllekaedpktwdellaaakklkgkfglpdpasgwlqaallakdgksldddggkdglkealellkklkdngktyd.tgadavsefanGevaft 193
                 +l+yn ++ +    + t+dell+  ++lkgk++      +++  +++  +g ++ +  + +++++al++lk  +d g++ + tg+d+  ++a+G++a+ 
  KIR65220.1 177 GLAYNGSVTK---EIRTVDELLT-RPDLKGKVTALSEMRDTMGLLMQS-NGHDPANF-TTAQFDDALNKLKRAVDSGQIRKfTGNDYAPDLAKGDIAAC 269
                 ********99...6********9.*********998999*********.*9999655.7999****************888799*************** PP

                 EE-TTHHHHHH-TTTSEEEE--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---BS-S-TTT.....HHHHHH-HH CS
   SBP_bac_8 194 ingswdiaaaqkagkklgaivpkqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektgyipvnksaal.....spevkkdpa 279
                 +++s+di+++  +++k+++++p +g+++ +++++vp++a++++  A ++++++++p+  a+la   +yi + ++a +     +pe++++p 
  KIR65220.1 270 VGWSGDIIQLSGENDKIKFVAPDSGVMLFSDNMMVPNKATHKAN-AEELINYYYEPAVAAKLAAYVNYICPVQGAKAemekiDPELAANPL 359
                 *******************************************7.************************8888888767778888888876 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.2   7.4e-28   2.2e-24       5     238 ..     119     363 ..     118     370 .. 0.84

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 7.4e-28
   SBP_bac_6   5 dlilsfdkdflekfieeglfqpldpanlpnvnkdfa...eeglkdpdgkyy.pygvgplvlavnkdrlkgrpvPksWaDLl.dPeykgkvalpgnngsd 98 
                 d+i+ +++   +++i  g +q+ldpa++pnv+ ++     +   dpd +++ p++ g ++la+n +++k+    ++ ++Ll +P++kgkv+  +     
  KIR65220.1 119 DIIV-LTDWMAARMIRLGWIQKLDPAKIPNVAANLLpslLNRSFDPDSRIAvPWQSGLAGLAYNGSVTKEI---RTVDELLtRPDLKGKVTALS----E 209
                 8999.9999999********************99998887777889888878***************9877...******99************....7 PP

   SBP_bac_6  99 lfealllalyk.........dfg.edgvkkllrnlkanlhpaq..mvkaagslesgepavsvvpyffadilpekkkgknlkvvwPedGalvspifmlvk 185
                 ++ +++l +           +    d++ kl+r++ ++++  +  ++++a  l++g+  +   + +++di++ + +++++k+v P +G  ++ + m+v+
  KIR65220.1 210 MRDTMGLLMQSnghdpanftTAQfDDALNKLKRAV-DSGQIRKftGNDYAPDLAKGD--IAACVGWSGDIIQLSGENDKIKFVAPDSGVMLFSDNMMVP 305
                 777888777777789**997555344455555555.455554468************..**************************************** PP

   SBP_bac_6 186 kg.kkkelakafidfllspevqailakagg.vfPvv...tnpavlnelpegaklkwld 238
                 ++ ++k+ a+++i++ ++p v+a la+  +   Pv+   ++ ++ +++   ++l ++d
  KIR65220.1 306 NKaTHKANAEELINYYYEPAVAAKLAAYVNyICPVQgakAEMEKIDPELAANPLIFPD 363
                 *************************999887899987554444444555555555555 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.5   3.2e-19   9.4e-16       9     314 ..      78     327 ..      69     328 .. 0.84

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 3.2e-19
                 HHHHHHHHHHHHHHTTEEEEEEEE..CHHHHHHHHHHHHHTTS..SSCSEEEECGGHHH.HHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHH CS
   SBP_bac_1   9 alqalvakafekehpgikVeiesv..gsgslaqkltlaiaaGd..gpaDviavdndwia.rlakaglllpldpyvkaylapgvkdaadklsssvlpkil 102
                 +l+a+v +     ++gi+V+++    + +++  k++ ++aa +  g  D+i   +dw+a r+++ g+ + ldp  +++ a       + l+ s++p+ +
  KIR65220.1  78 SLDAFV-A-----KTGIQVTYTEDinDNNEFFGKVQNQLAACQgtGR-DIIVL-TDWMAaRMIRLGWIQKLDPAKIPNVAANL--LPSLLNRSFDPDSR 166
                 444444.3.....39*****877667778888877777776555477.*****.99999988888*********999965554..46888899999999 PP

                 CEEEESEEEEE.EEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHHHHH CS
   SBP_bac_1 103 dskvlyvPlya.argliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaatyl 200
                  +    vP+++   gl+YN ++ ++       t d   e++ +++ kgk +        a+ +   +   l++s+g            +p+  t+a++ 
  KIR65220.1 167 IA----VPWQSgLAGLAYNGSVTKEIR-----TVD---ELLTRPDLKGKVT--------ALSEMRDTMGLLMQSNG-----------HDPANFTTAQFD 234
                 96....****66************533.....555...6669999999999........77777777778888888...........888888888888 PP

                 HHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCSTHH CS
   SBP_bac_1 201 vklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgsknpe 299
                  +l+   +l++     +   ++g+++++++++G++a+ + +++++ +   ++ k +f+a++++++                    ++++++p+++ +++
  KIR65220.1 235 DALN---KLKRAVDSGQIRKFTGNDYAPDLAKGDIAACVGWSGDIIQLSGENDKIKFVAPDSGVML------------------FSDNMMVPNKATHKA 312
                 8888...8889**************************************99999999999999998..................99************* PP

                 HHHHHHHHHTSHHHH CS
   SBP_bac_1 300 aAkkFldfllspeaq 314
                  A+++++++++p+ +
  KIR65220.1 313 NAEELINYYYEPAVA 327
                 ***********9975 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   6.5e-08   0.00019      83     227 ..     178     333 ..      77     333 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.5e-08
                 EEESTT-TT---SHHHHHH.SS-..-EEEE--T-TTTTHH.HHHHGGG--........HHHHHHHHHTEEEEESSH.......HHHHHHHHTTT-SEEE CS
  SBP_bac_11  83 iavpkgnpkkikgwadLlk.pgl..klavadPttspsGlaalalleaaga........qellkalekkvvklgess.......rqlltaveageadagi 163
                 +a++ +  k i+++++Ll  p+l  k+   +  +++ Gl     l ++++        +++++al+k  +  ++s         + + +++ g+++a +
  KIR65220.1 178 LAYNGSVTKEIRTVDELLTrPDLkgKVTALSEMRDTMGL-----LMQSNGhdpanfttAQFDDALNKLKR-AVDSGqirkftgNDYAPDLAKGDIAACV 270
                 445555578899998865548884445555555555555.....33333333444444334444443222.222212223333556666********** PP

                 EEHHHHH...HSTTSSEEEE--TTT--...EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHT CS
  SBP_bac_11 164 vyeseakaa.engdkleavylpeglnldpldypaavlkkaakreaAraFlafLrspeaqailrky 227
                 ++  ++++  ++ dk+++v++  g++l      ++v++ka++++ A++++++ + p++ a l++y
  KIR65220.1 271 GWSGDIIQLsGENDKIKFVAPDSGVML--FSDNMMVPNKATHKANAEELINYYYEPAVAAKLAAY 333
                 ****9998856999************9..4446889***********************999876 PP

>> LPAM_2  Prokaryotic lipoprotein-attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   5.9     3e-05      0.09       2      18 ..      21      37 ..      20      38 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3e-05
      LPAM_2  2 llllallllLaGCGqKG 18
                +++la++ +LaGCG KG
  KIR65220.1 21 AAMLATAGALAGCGTKG 37
                689************** PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  11.0     0.012        36       2      25 ..       8      31 ..       7      36 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.012
  TAT_signal  2 lSRRdFLKgsAAaaAAaalggcaa 25
                l+RR +L g+++ aA++a++g++a
  KIR65220.1  8 LTRRGLLTGTLGSAAMLATAGALA 31
                789999999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3054.65
//
Query:       KIR65221.1  [L=304]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-11   44.1  10.9    1.8e-11   44.1  10.9    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.53    9.9   5.1       0.21   11.2   2.1    1.8  2  CPP1-like     Protein CHAPERONE-LIKE PROTEIN OF POR1-like


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.6       0.1   9.3e+02      43      44 ..      60      83 ..      29     107 .. 0.35
   2 !   44.1  10.9   2.1e-15   1.8e-11       5     171 ..     102     293 ..      98     298 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.1
  BPD_transp_1 43 f......................v 44
                                         +
    KIR65221.1 60 PsgslstgyaltwafgnypdavqA 83
                  122222222222222333333332 PP

  == domain 2  score: 44.1 bits;  conditional E-value: 2.1e-15
  BPD_transp_1   5 Gilaa.......lnrnkkldkllrpliivllslPsfvlaillvlvf................vilsilghlilpviillllsaapyvrlirraalrs 78 
                   G+l++        ++ +++++ll++++ +++ + ++v  + +  ++                  ++ l  +  +v++ l++ ++p+ +l  +a l+ 
    KIR65221.1 102 GLLMGyplayaiAQKAGRWKNLLLVCVVAPMFTSFLVRTLAWKTILsdngalvgllrdvhllGPDGRLLATPVAVVLGLTYNFLPFLVLPLYASLER 198
                   4444444446666999*********************77777766677777778888888877778888899999999******************* PP

  BPD_transp_1  79 lpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG..lgtlllea.ilgydyseisnggvlalviavlllnlv 171
                   l+  l eaa  l as+ q+fr+v+lP+++p +i+g +l f+ + g+++ +e+lg+ +   +g+++ +a +   dy++++ ++++ l +a+l++++v
    KIR65221.1 199 LDYRLLEAAGDLYASPVQTFRRVTLPLSMPGLIAGTLLFFIPATGDYINAELLGTPNEymIGNVIDSAfLVRLDYPQGA-ALSFLLMAAILAVVFV 293
                   ******************************************************8776776666544415567888777.4444444444444444 PP

>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.1   2.3e-05      0.21     135     185 ..      82     129 ..      30     141 .. 0.62
   2 ?   -2.0   0.1      0.26   2.3e+03      91     133 ..     274     293 ..     259     300 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.3e-05
   CPP1-like 135 nrKekklgravlltlvgLvvGlllGsllasllqvdvalsglsseellvslv 185
                 +    +lgr++l++ ++Lv+Gll+G  la  + ++   +g +++ llv++v
  KIR65221.1  82 QAYWPQLGRSFLYAGIALVLGLLMGYPLAYAIAQK---AGRWKNLLLVCVV 129
                 3334489**********************999554...3455555555554 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.26
   CPP1-like  91 Pssedlliraavflvlavltlvapaesvpalllalglgasiyf 133
                 P++                         +++ll+ +++a +++
  KIR65221.1 274 PQGAA-----------------------LSFLLMAAILAVVFV 293
                 33333.......................344444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2322.05
//
Query:       KIR65222.1  [L=280]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.3e-18   64.9  16.3    7.3e-18   64.9  16.3    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        4.5    7.8  20.0    5.6e+02    1.0  15.2    3.0  2  SNARE_assoc   SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.026   2.4e+02      46      65 ..      17      36 ..       3      51 .. 0.62
   2 !   64.9  16.3   8.2e-22   7.3e-18       2     172 ..      82     255 ..      81     261 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.026
  BPD_transp_1 46 lsilghlilpviillllsaa 65
                  l +lg+l lp++++++ls+ 
    KIR65222.1 17 LLVLGYLSLPIAVVAALSFN 36
                  34666666666666665554 PP

  == domain 2  score: 64.9 bits;  conditional E-value: 8.2e-22
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrw 95 
                   ++lG l+a   ++++++++  + +li++++++P +v++  l+++ +++ ++ ++++ v+i+ +++ + +v+++++a l  +++ l+eaa  l as+w
    KIR65222.1  82 TVLGTLMAfalVRHRFTGRSGINVLIFLPMATPELVMGTSLLAL-FVSAGVPQGFWTVVIAHVMFCVSFVVVTVKARLAGMDRRLEEAAADLYASPW 177
                   689*********************************99998855.56679999******************************************** PP

  BPD_transp_1  96 qifrkvvlPnalppiitglilafggllggavlleflgswpG.lgtllleailgydyseisnggvlalviavlllnlva 172
                   q+fr v+lP++lp i++ ++laf +++ +++++ f ++ +  + + ++ a +    ++ +++g+++++ia+ll+ l++
    KIR65222.1 178 QTFRLVTLPLVLPGIVAAALLAFSLSFDDFIITNFNAGTTVtFPMYVWGAAQRGIPPQVNVIGTAMFAIALLLVGLSS 255
                   *************************************55445556666666666666666999999999999999876 PP

>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       1.6   1.4e+04      88      91 ..      19      22 ..       7      34 .. 0.44
   2 ?    1.0  15.2     0.062   5.6e+02      16     114 ..      71     222 ..      63     228 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.6
  SNARE_assoc 88 vaGl 91
                 v+G 
   KIR65222.1 19 VLGY 22
                 1121 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.062
  SNARE_assoc  16 lllgtlvtslgallGaslayllgrylgr......................................................kalrrkllsekrvkal 59 
                  + +g+++t+++++lG ++a++l+r+ +                                                           r ++  +r++++
   KIR65222.1  71 VQIGFIATVVATVLGTLMAFALVRHRFTgrsginvliflpmatpelvmgtsllalfvsagvpqgfwtvviahvmfcvsfvvvTVKARLAGMDRRLEEA 168
                  56799999999999999999999977666677777777666666666665555555544444444444444444444444443333333333333332 PP

  SNARE_assoc  60 erlverygflallllrllpivPrdlvnyvaGltrvsfkrFflatfiGsipwalvy 114
                  ++ +     ++++ l  lp v   +v++++ ++++sf +F++++f +    ++  
   KIR65222.1 169 AADL-YASPWQTFRLVTLPLVLPGIVAAALLAFSLSFDDFIITNFNAGTTVTFPM 222
                  2222.13335588888888888888888888888888888888887766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2011.25
//
Query:       KIR65223.1  [L=473]
Description: FAD-dependent oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-51  176.0   8.1    1.5e-51  176.0   8.1    1.3  2  DAO            FAD dependent oxidoreductase
    0.00019   20.8   0.4     0.0019   17.5   0.3    2.1  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00023   21.3   1.7    0.00075   19.7   1.7    1.9  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0033   16.6   9.5      0.012   14.7   8.1    2.4  2  FAD_binding_2  FAD binding domain
  ------ inclusion threshold ------
       0.03   13.7   1.3      0.058   12.7   1.3    1.5  1  FAD_oxidored   FAD dependent oxidoreductase
      0.049   12.3   0.3       0.17   10.6   0.3    1.8  2  HI0933_like    HI0933-like protein
       0.17   11.7   0.1       0.41   10.5   0.1    1.5  1  DUF5609        Domain of unknown function (DUF5609)


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.0   8.1     6e-55   1.5e-51       1     351 [.      39     408 ..      39     409 .. 0.83
   2 ?   -4.1   0.0       3.4   8.7e+03     211     234 ..     426     449 ..     412     464 .. 0.63

  Alignments for each domain:
  == domain 1  score: 176.0 bits;  conditional E-value: 6e-55
                 EEEEECTSHHHHHHHHHHHHTT....EEEEESSSSTTSSGGGSSEEEEESSS......STHHSTH........HHHHHHHHHHHHHHHHHHHHSSTTSE CS
         DAO   1 dvviiGGGiiGlstAyeLarrg....VtllekgdiagsgaSgrnsgllhsgl......rylpeas........elarlslealeelreleeelgididy 81 
                 d+++iGGG+ Gl++A+ + ++     V+l+++g  +g++aSgrn+g+++++l                     el rl +e l+ +++  + +gid+d+
  KIR65223.1  39 DLLVIGGGYGGLWAALLAKQADpdadVLLVDAG-TCGWAASGRNGGFCSASLthglanG-----VarfpgevaELERLGRENLAAIAATVDAYGIDCDF 131
                 789***************8774589********.**************99997444440.....3666666668889999999999888889******* PP

                 EEEEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTE.EEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEE... CS
         DAO  82 rrtGllslaadeeelealdkllallleagldaelldaeevrelepalpgllgalfypdt.gqvdpakltaalaraaealGveilegtevtgleeed... 176
                 +rtG l +a  + +l++l++ ++l++ +g d++ll ++evr+    +p +lg+++++d  + +dpakl+++l+ra+ +lGv+i+e+t+vtgl+ +    
  KIR65223.1 132 ERTGELAVAVRPYQLDGLAEDAELARGFGHDVRLLGRDEVRAEVD-SPTYLGGMWDRDRvAMLDPAKLAWGLRRACLDLGVRIHEHTRVTGLRGDAaal 229
                 *********98889*********9988999********9**7774.57999****99986888*****************************5533555 PP

                 ..TCEEEEEEECT.EEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE..EEETTTTEEEEEETTSEEEEEESSE CS
         DAO 177 ..gkvwgverttp.gendaadavVnaaGawsdllgllkeldlpispvrgqvlvlkplseklvspaailpvpe..tdddgrgvyvtprkdgrvlvGgtad 270
                     ++gv  + + g ++ a+ vV++++a+  ll   ++l+  ++pv  + l+++pl++++ + a ++ +++   d+++  +y++ ++dgr+l+Gg + 
  KIR65223.1 230 aaSTAGGV--EQApGVVR-ARRVVLTTNAFPPLL---RRLRAWVVPVYDYALMTEPLTDAQ-RDAIGWRNRQglADTGNQFHYYRITRDGRILFGGYDA 321
                 55555566..33337754.488********9999...9999999*************9965.5569999999*9777777777777889*****99987 PP

                 .EETTCSS...TSCSHHHHHHHHHHHHHHSGGGCGEE..EEEEEEEEE.TTSSEEEEEEETEE.EEEEEEECTTTHHHHHHHHHHHHHH CS
         DAO 271 .eesgddd...pevdeedidellealrklfPqlgdvl..rkwaGlrpl.pdglpligetpgvk.glylatGhsghGltlapatGkllae 351
                  +++g  +   +e  ++ + +l e+  + fPql+dv+  ++w G+ ++ +   p++g +  ++ +l +a+G+ g G+      ++++ +
  KIR65223.1 322 vYHHGNRVapeLEQRPATFTALAEHFFTTFPQLADVRfsHRWGGVIDTcTRFCPFFGTA--YDgRLAYAAGYTGLGVGATRFGARVMLD 408
                 755555553344555666666888888888**98877557*******64888******7..555************9988887777755 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 3.4
                 CTTTSEEEEEEEEEEEEEECCTHS CS
         DAO 211 keldlpispvrgqvlvlkplsekl 234
                 k+l+ p +pvr+  ++l ++s++ 
  KIR65223.1 426 KPLPFPPEPVRAAGIHLTRWSLAR 449
                 555544488888888887777644 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.3   7.5e-07    0.0019       2      35 ..      39      73 ..      38     119 .. 0.90
   2 ?    1.1   0.0     0.075   1.9e+02     188     228 ..     201     246 ..     186     253 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7.5e-07
                 SEEEE--SHHHHHHHHHHHH..HTS-EEEEETTHCH CS
                 xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq..agakvtlvelegtc 35
                 d++viGgG +Gl+aal ++q    a+v+lv + gtc
   KIR65223.1 39 DLLVIGGGYGGLWAALLAKQadPDADVLLV-DAGTC 73
                 789*****************655*******.88888 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.075
                  HHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCE.....EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxx RF
  Pyr_redox_2 188 aleealekeGvevklgtsvkeidgngeklevvledgee.....ida 228
                   l++a  + Gv+++ +t+v+ ++g+   l   +  g e     + a
   KIR65223.1 201 GLRRACLDLGVRIHEHTRVTGLRGDAAALAASTAGGVEqapgvVRA 246
                  566777889***************9984443333333333333555 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   1.7   2.9e-07   0.00075       1      45 [.      42      89 ..      42     100 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.9e-07
                   EE--SHHHHHHHHHHHCC..TEEEEEE-SSSSSSGGG-EECETT...CEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka..gfdvlllekrdrlGGraasyevpg...vrv 45
                   ++G+G +Gl aA l+++a  ++dvll++++  ++G+aas +++g     +
     KIR65223.1 42 VIGGGYGGLWAALLAKQAdpDADVLLVDAG--TCGWAASGRNGGfcsASL 89
                   8************9999878999****998..99********99755444 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   8.1   4.7e-06     0.012       1     205 [.      39     265 ..      39     304 .. 0.67
   2 ?   -1.3   0.0      0.33   8.5e+02      91     162 ..     286     363 ..     271     364 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.7e-06
                    SEEEE--SHHHHHHHHHHHHTTT..-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHH.THHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGl..kvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafve.aapeav 93 
                    D++ViG+G +GL AAl a++a    +v++v+ +   g a+    Gg++ ++  +    g   + ++ +   +++l  l+ ++l+ + ++  a    
     KIR65223.1  39 DLLVIGGGYGGLWAALLAKQADPdaDVLLVDAGTC-GWAASGRNGGFCSAS-LT---HGL-ANGVARFPGEVAELERLGRENLAAIAATvDAYGID 128
                    89**************9999654359*****9997.333333345555444.22...344.55677788888888888877777777777777788 PP

                    HHHHHTT----B...........CCTS......SB-EEE-TT-SST.....EEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEE CS
  FAD_binding_2  94 deLeelgvpfsr...........tedg......pvdvrelGglsat.....artlhdaadarretlvtghallarlvesarkagvdfqerteadeL 167
                      +e++g                +           dvr lG    +       +l +++d+ r+++ +  +l+  l ++++++gv+++e+t+++ L
     KIR65223.1 129 CDFERTGELAVAvrpyqldglaeD--AelargfGHDVRLLGRDEVRaevdsPTYLGGMWDRDRVAMLDPAKLAWGLRRACLDLGVRIHEHTRVTGL 222
                    888888444333333444444330..1334446666666666666677887567778899888********************************* PP

                    EECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG....... CS
  FAD_binding_2 168 ivedgrvtGavvenpesgrevrirakavvlatgGfgr......a 205
                     + d  +  a  +   ++    +ra++vvl+t +f+       a
     KIR65223.1 223 -RGDAAALAASTAGGVEQAPGVVRARRVVLTTNAFPPllrrlrA 265
                    .44444444444433444444788***********964443332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.33
                    HHHHHHHHTT----BCCTSSB-EEE-TT-SST...EEEE-.STT-........HHHHHHHHHHHHHHTCT.EEEEESE CS
  FAD_binding_2  91 eavdeLeelgvpfsrtedgpvdvrelGglsat...artlhdaadarr..etlvtghallarlvesarkag.vdfqert 162
                    +a+ +  ++g+  ++++ + +++++ G        a ++h++ +a++  ++ +t  al++ +++++ +++ v+f +r+
     KIR65223.1 286 DAIGWRNRQGLADTGNQFHYYRITRDGRILFGgydAVYHHGNRVAPEleQRPATFTALAEHFFTTFPQLAdVRFSHRW 363
                    444444444444444444444444433333335553344444443333788999999999999999777667777665 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.3   2.3e-05     0.058       1      31 [.      39      71 ..      39     106 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAara..GakvlLveer 31
                  D++V+GGg +G+ AA+ A++a  +a vlLv+  
    KIR65223.1 39 DLLVIGGGYGGLWAALLAKQAdpDADVLLVDAG 71
                  99****************988335899999975 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   6.5e-05      0.17       2      32 ..      39      71 ..      38     135 .. 0.86
   2 ?   -0.8   0.0      0.19   4.9e+02     115     147 ..     202     233 ..     196     255 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.5e-05
                 SEEEE--SHHHHHHHHHH..HHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisa..akrgkrVllleka 32
                 d++viGgG  Gl aA+ a  a+ +++Vll++++
   KIR65223.1 39 DLLVIGGGYGGLWAALLAkqADPDADVLLVDAG 71
                 789*************99556678999999987 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.19
                  HHHHHHHHT-EEE-S--EEEEECETTE.EEEEE CS
  HI0933_like 115 llkelkeagvklrletevksvekeedgkfrvkt 147
                  l +++ + gv+++ +t+v++++ ++   +  +t
   KIR65223.1 202 LRRACLDLGVRIHEHTRVTGLRGDAAA-LAAST 233
                  678899999999999999999554444.44433 PP

>> DUF5609  Domain of unknown function (DUF5609)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00016      0.41      31      56 ..     263     288 ..     259     290 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
     DUF5609  31 vaaWkVgsYdVlllageltaqleqav 56 
                 ++aW V  Yd +l++ +lt+++++a+
  KIR65223.1 263 LRAWVVPVYDYALMTEPLTDAQRDAI 288
                 68*******************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3324.85
//
Query:       KIR65224.1  [L=400]
Description: ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-23   84.4   0.0    2.2e-23   83.7   0.0    1.3  1  Sacchrp_dh_C     Saccharopine dehydrogenase C-terminal domain
    1.4e-20   73.9   0.1    1.9e-20   73.4   0.1    1.2  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
      0.039   14.1   0.1      0.065   13.3   0.1    1.4  1  Ldh_1_N          lactate/malate dehydrogenase, NAD binding do
      0.057   14.2   0.2      0.096   13.5   0.2    1.3  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
      0.068   12.5   0.2       0.12   11.7   0.2    1.4  1  ThiF             ThiF family
      0.089   13.6   0.0        0.2   12.5   0.0    1.6  1  GARS_N           Phosphoribosylglycinamide synthetase, N doma


Domain annotation for each model (and alignments):
>> Sacchrp_dh_C  Saccharopine dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   7.4e-27   2.2e-23       1     264 [.     143     392 ..     143     393 .. 0.82

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 7.4e-27
                   BTTTBHHHHHHHHHHHCCCHTTBECCCCCCCCCCCCECCCCESTTCEEESS-HHHHHHHCCSEEEEEETTE..EEECTCCCSGCC.TCEEECCCCCE CS
  Sacchrp_dh_C   1 GldPGidhllamkaidevkakggkiesflsycgglpapeasdnplgYkfsWspegvlreltnpakvlengq..vkevpgsellkgakkpiyilpgls 95 
                   G++PG++ ++a +a de+ a+   i+++  ++g   ++e  d    +  s+s+++ ++e++np+ ++e+ +   ++ p se       p      ++
    KIR65224.1 143 GVEPGLSDVFARYAADELFAE---IDEIGVRDGANLTVEGYD----FAPSFSIWTTIEECLNPPVIWERDRgwFTTEPFSE-------PEV----FH 221
                   99**************99884...777777777777677664....7888*********************9988999222.......222....46 PP

                   EC.TTECEEE..CTHCHHHHHHC.SCSEEEEEEEE.....EHHHHHHHHHHHTTT--SCECCCCCCHHSTT.C.EHHHHHHHHCCHHCCCCTTEEEE CS
  Sacchrp_dh_C  96 le.gypnrds..lpyeelyglpeaktlfrgtlryp.....gfsellkslkelGllseepkeealkawlseg.e.spldvlaalLekklalepgerDl 182
                   ++ g+++ ++  +++ee+  +p  +++ + ++ ++     +f e+l++l++lGl s+ep    +++    g   sp+dv+aa L+++++l+++ r  
    KIR65224.1 222 FPeGIGPVECvnVEHEEVLLIP--RWVDARRVTFKyglgeEFIEVLRTLHKLGLDSTEP----VTV---RGvRmSPRDVVAAALPDPATLGDRMRGK 309
                   666999999999**********..7886666666664888888888999999******9....666...555568********************88 PP

                   EEEEEEEEEE.TTSEEEEEEE.EEEEEEEHH.....SSSHHHHHHHHHHHHHHHHHHTTSCTSSEEEEGGGS.CHHHHHHHHHHHHHCT CS
  Sacchrp_dh_C 183 vvlqhefgie.sdgkkkekkt.stlvgydee.....gssamaktvGvpaaiaaklildgkikkrGvvtpeelvdpeiyeplleeLekeG 264
                   +     + +  +dg+ +e  + +++v+  e      g++a+ + ++v  ++a +l+++g+ +++Gv++pe+l  p+   p+l+ L  +G
    KIR65224.1 310 TCAGTWVTGVgKDGEPREV-YlYHVVDN-EWsmaeyGHQAVVWQTAVNPVVALELLATGEWSGAGVIGPEAL-PPR---PFLDLLTGYG 392
                   8888888888888886343.35999963.1134456*********************************999.775...****999876 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.1   6.5e-24   1.9e-20       1     129 [.       3     138 ..       3     139 .. 0.96

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 6.5e-24
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS..SEEEE-SSGGGHHHHHHHHHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg..dlvvnlsppissldvlkaCiet 92 
                      +l++GaG+vG+a+a   ar+  +d +++vad + +++++++a  +g rf a+++da+  +a +aal++e+  + v+n++ p + +++ + ++++
       KIR65224.1   3 ILLVGAGGVGSAAAAIAARRTFFD-TMVVADADAARAARAVAG-HGDRFVAATVDASSADA-VAALCREHriTHVLNAVDPRFVMPIFDGAYAA 93 
                      899*****************9986.***************986.9****************.********9999******************** PP

                      T-EEEESS-........BCGCCSCHCCSHHHHHTHHHHHHCTSEE CS
  Sacchrp_dh_NADP  93 gvhyvdtsi........skeertnyalreavlklkekakeagvta 129
                      g++y+d ++        ++ ++t  +l +++ + ++++++ag  a
       KIR65224.1  94 GADYLDMAMslshphpkRPYAETGVKLGDEQFAVADRWASAGRLA 138
                      ******9999999*****************************877 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.2e-05     0.065       1      48 [.       1      45 [.       1      81 [. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.2e-05
                EEEEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHH CS
     Ldh_1_N  1 vkvavvGaaGgiGqslalllankkladelaLlDiakekleGvaldlsh 48
                +++ +vGa Gg+G++ a   a + + d +++ D++ +++    +   h
  KIR65224.1  1 MRILLVGA-GGVGSAAAAIAARRTFFDTMVVADADAARA--ARAVAGH 45
                689*****.********999999**********996533..3333344 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   3.2e-05     0.096       1      67 [.       1      75 [.       1      98 [. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.2e-05
                  EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH.........HHHTTHEEESSHHHHHTCTTESEEE CS
  GFO_IDH_MocA  1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeav.........aesfgveaysdleelladpeidavi 67
                  +r++++GaG +gs  + ++ +++ + + + + d da+ra ++         a++ ++++ + +++l ++ +i  v+
    KIR65224.1  1 MRILLVGAGGVGSAAA-AIAARRTFFDTMVVADADAARAARAvaghgdrfvAATVDASSADAVAALCREHRITHVL 75
                  699************9.999999999*************9998888777777777777777777777766666555 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   3.9e-05      0.12      19      51 ..       1      34 [.       1      38 [. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.9e-05
                SEEEEE--SHHHHHHHHHHHHHTT.TEEEEEESS CS
                xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
        ThiF 19 skvllvGaGglGsellknLalsGv.gkltlvDnD 51
                +++llvGaGg+Gs ++   a+  +     ++D D
  KIR65224.1  1 MRILLVGAGGVGSAAAAIAARRTFfDTMVVADAD 34
                59*************9988874443677777766 PP

>> GARS_N  Phosphoribosylglycinamide synthetase, N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.5e-05       0.2       1      64 [.       1      83 [.       1      97 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.5e-05
                EEEEEEESSHHHHHHHHHHTTSTTESEEEEEE--CGG...................TTHHHHHHHHHHCTESEEEE-SHHHHH CS
      GARS_N  1 mkvLvvGsGGRehalawklaqspkvekvyvapgNagt...................edlealvefakeekidlvvvGpeapLv 64
                m++L+vG GG   a a   a+ +  ++++va  +a+                    ++++a++++++e++i+ v+ + +   v
  KIR65224.1  1 MRILLVGAGGVGSAAAAIAARRTFFDTMVVADADAARaaravaghgdrfvaatvdaSSADAVAALCREHRITHVLNAVDPRFV 83
                9****************999**9********999988899999999888888776655568999*****99998876665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3137.40
//
Query:       KIR65225.1  [L=121]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-21   76.1   0.0      2e-21   75.9   0.0    1.1  1  Gp49      Phage derived protein Gp49-like (DUF891)


Domain annotation for each model (and alignments):
>> Gp49  Phage derived protein Gp49-like (DUF891)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.0   1.1e-25     2e-21       2      90 .]      13     108 ..       9     108 .. 0.92

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 1.1e-25
        Gp49   2 eldalpkkarakilaaldlleeggpdlgkplvkkle....dglwElrpksag.giiRvlyafdpgrkvilLhafqKkt..qktpkkeielAekrlk 90 
                 el++ + ++++++  a+d+l+e gp lg+plv++l+    ++l+Elrp+s++  ++Rvl++fdp+++++lL+a++K+   +++++++i+lAe ++k
  KIR65225.1  13 ELRRTDLDTYRSVSVAVDMLAEVGPALGRPLVDTLRgssiSNLKELRPRSGRdVAVRVLFVFDPWSQAVLLVAGNKAHnwTRWYQENIPLAEIAYK 108
                 45556889****************************************9988799***********************666**********98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 935.79
//
Query:       KIR65226.1  [L=103]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-11   43.8   0.0    2.1e-11   43.6   0.0    1.1  1  HTH_37          Helix-turn-helix domain
    3.9e-11   42.8   0.1    6.6e-11   42.1   0.1    1.4  1  HTH_3           Helix-turn-helix
    1.2e-10   41.6   1.6    1.7e-10   41.1   0.9    1.6  1  HTH_31          Helix-turn-helix domain
    1.3e-07   31.6   0.0    1.9e-07   31.0   0.0    1.3  1  HTH_19          Helix-turn-helix domain
    1.6e-05   24.3   0.1    3.3e-05   23.3   0.1    1.5  1  Sigma70_r4      Sigma-70, region 4
    2.3e-05   24.2   0.2    4.8e-05   23.1   0.2    1.6  1  HTH_25          Helix-turn-helix domain
     0.0016   18.2   0.1     0.0037   17.0   0.1    1.7  1  HTH_23          Homeodomain-like domain
  ------ inclusion threshold ------
      0.012   15.7   0.0      0.015   15.4   0.0    1.2  1  MqsA_antitoxin  Antitoxin component of bacterial toxin-antito
      0.013   15.5   0.0      0.021   14.8   0.0    1.4  1  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.031   14.2   0.0      0.051   13.5   0.0    1.5  1  MarR_2          MarR family
      0.068   13.0   0.3        0.4   10.6   0.0    2.2  2  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
      0.075   12.7   0.0       0.15   11.8   0.0    1.5  1  Sigma70_r4_2    Sigma-70, region 4
      0.088   12.8   0.1       0.14   12.1   0.1    1.4  1  Pou             Pou domain - N-terminal to homeobox domain
        0.1   12.2   0.0       0.26   10.9   0.0    1.6  2  HTH_24          Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   1.7e-14   2.1e-11      15      77 ..      26      91 ..      10      93 .. 0.84

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 1.7e-14
                HHHHHHHH...HHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTTEEEEE CS
      HTH_37 15 aKaqlala...iaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalGqkvei 77
                a+++ +     +ae +++++l+q+++a+l+g++  +vs++++g+l+  ++ +L ++++alG ++ i
  KIR65226.1 26 ARTEAWVSafhLAEERKRLGLTQRQVAELMGVTPGRVSQIENGDLDVNEVATLSRYAAALGARLRI 91
                44444443456****************************************************998 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1   5.1e-14   6.6e-11       1      49 [.      37      86 ..      37      92 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 5.1e-14
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHT CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLg 49
                l+e Rk lgl+q+++Ae++Gv++  +s+iEnG      + tl ++a aLg
  KIR65226.1 37 LAEERKRLGLTQRQVAELMGVTPGRVSQIENGdLDVNEVATLSRYAAALG 86
                6899****************************866678888888888888 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.9   1.3e-13   1.7e-10       5      56 ..      36      87 ..      34      90 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1.3e-13
      HTH_31  5 lLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgl 56
                +L++ R+r GL+q++vAe+ gv++ ++s++E+G  ++   a+l ++a alg+
  KIR65226.1 36 HLAEERKRLGLTQRQVAELMGVTPGRVSQIENGDLDVNEVATLSRYAAALGA 87
                68889******************************988*************8 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.5e-10   1.9e-07       5      53 ..      38      86 ..      36      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.5e-10
      HTH_19  5 keaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealg 53
                 e R+ lgltq+++ae  g+++++ s+iEng  dv +  +l ++a alg
  KIR65226.1 38 AEERKRLGLTQRQVAELMGVTPGRVSQIENGDLDVNEVATLSRYAAALG 86
                566****************************766666777788888877 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   2.6e-08   3.3e-05      20      42 ..      45      67 ..      39      70 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.6e-08
                T--HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4 20 glTleEIgerlgiSrerVrqiek 42
                glT+ +++e +g++ +rV+qie+
  KIR65226.1 45 GLTQRQVAELMGVTPGRVSQIEN 67
                79*******************95 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.2   3.7e-08   4.8e-05       2      56 ..      37      86 ..      36      90 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.7e-08
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT--TTSS-HHHHHHHHHHHHHHTT CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEeddfdalpepvylrgylrnYArlLg 56
                L ++R+++gl+ ++va+   + +  + ++E++d+d  + ++     l +YA +Lg
  KIR65226.1 37 LAEERKRLGLTQRQVAELMGVTPGRVSQIENGDLDVNEVAT-----LSRYAAALG 86
                899*******************************9887665.....666666666 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   2.9e-06    0.0037       9      37 ..      27      65 ..      20      68 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.9e-06
      HTH_23  9 r......illllae....GlsvreIAreLgvsrrTvyrw 37
                r      + +l+ e    Gl++r++A+++gv++  v+++
  KIR65226.1 27 RteawvsAFHLAEErkrlGLTQRQVAELMGVTPGRVSQI 65
                444554477888878899****************99988 PP

>> MqsA_antitoxin  Antitoxin component of bacterial toxin-antitoxin system, MqsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   1.1e-05     0.015      68     107 ..      31      70 ..       7      81 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
  MqsA_antitoxin  68 lvdpafiarvrkkleldqreaaeifGgGvnafsryekGkv 107
                      v + ++a+ rk+l+l+qr++ae++G+     s+ e+G  
      KIR65226.1  31 WVSAFHLAEERKRLGLTQRQVAELMGVTPGRVSQIENGDL 70 
                     4567788999*****************9999999999976 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.7e-05     0.021      17      41 ..      41      65 ..      21      67 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.7e-05
                EEEEEHHHHHHHHHTTSSHHHHHHH CS
   HTH_Crp_2 17 eielpltqeelAsmlGltretvsri 41
                + +l ltq++ A+++G+t+  vs+i
  KIR65226.1 41 RKRLGLTQRQVAELMGVTPGRVSQI 65
                35799*****************986 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     4e-05     0.051      19      41 ..      42      65 ..      13      67 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4e-05
                TS.EEEHHHHHHHHTSSHHHHHHH CS
      MarR_2 19 gr.dltvgelarrlglsksavsri 41
                 r  lt++++a+ +g+++++vs+i
  KIR65226.1 42 KRlGLTQRQVAELMGVTPGRVSQI 65
                33448*****************98 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.45   5.8e+02      53      64 ..      11      21 ..       9      22 .. 0.82
   2 ?   10.6   0.0   0.00032       0.4      10      31 ..      47      68 ..      29      87 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.45
  YdaS_antitoxin 53 reeLRpDvdwsf 64
                    reeLR D d+++
      KIR65226.1 11 REELRDD-DGAY 21
                    89****9.7765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00032
  YdaS_antitoxin 10 gqkaLAealgvsqqaVsqWlkg 31
                    +q+++Ae+ gv++  Vsq  +g
      KIR65226.1 47 TQRQVAELMGVTPGRVSQIENG 68
                    5899999999999999998655 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.15      25      43 ..      44      62 ..      39      64 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
                  S---HHHHHHHHT--HHHH CS
  Sigma70_r4_2 25 eglsykEIAellgisegtV 43
                   gl+++++Ael+g+++g V
    KIR65226.1 44 LGLTQRQVAELMGVTPGRV 62
                  79**************998 PP

>> Pou  Pou domain - N-terminal to homeobox domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00011      0.14      12      37 ..      36      61 ..      29      81 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
         Pou 12 efkqkRiklgltQadvglaLgklygk 37
                ++ ++R +lgltQ +v++ +g + g 
  KIR65226.1 36 HLAEERKRLGLTQRQVAELMGVTPGR 61
                78899************999987765 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0002      0.26      17      36 ..      45      64 ..      45      65 .. 0.93
   2 ?   -3.3   0.0       5.4   6.9e+03      14      24 ..      66      76 ..      66      79 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0002
      HTH_24 17 risqreLAerlglSpstvnr 36
                +++qr++Ae  g++p+ v++
  KIR65226.1 45 GLTQRQVAELMGVTPGRVSQ 64
                69****************86 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.4
      HTH_24 14 knprisqreLA 24
                +n+++  +e+A
  KIR65226.1 66 ENGDLDVNEVA 76
                68888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 746.60
//
Query:       KIR65227.1  [L=225]
Description: hypothetical protein TK50_07025 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00021   21.3   0.0       0.51   10.4   0.0    2.3  2  PAS        PAS fold
    0.00076   19.5   0.2        2.3    8.3   0.0    2.8  2  Cuticle_1  Crustacean cuticle protein repeat
      0.002   18.6   0.4          2    8.9   0.1    2.3  2  VBS        Vinculin Binding Site
     0.0053   17.0   0.0        3.8    7.8   0.0    2.3  2  PAS_4      PAS fold
  ------ inclusion threshold ------
      0.014   15.5   0.2        5.5    7.1   0.1    2.4  2  ChapFlgA   Chaperone for flagella basal body P-ring formation
      0.025   15.0   0.1         11    6.5   0.0    2.5  2  TonB_C     Gram-negative bacterial TonB protein C-terminal
      0.046   13.4   0.3      0.069   12.8   0.3    1.2  1  DUF3483    Domain of unknown function (DUF3483)
       0.13   12.1   0.8        7.9    6.4   0.1    2.5  2  Barwin     Barwin family
        4.2    5.7   5.7        9.8    4.5   5.7    1.6  1  Tic110     Chloroplast envelope transporter
        6.7    6.4  14.3         12    5.5   0.6    2.1  2  DUF4126    Domain of unknown function (DUF4126)


Domain annotation for each model (and alignments):
>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00088       1.6      12      50 ..      77     115 ..      66     118 .. 0.86
   2 !   10.4   0.0   0.00028      0.51      12      50 ..     186     224 ..     176     225 .] 0.87

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00088
                 SEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGB CS
         PAS  12 dpifvvDedgrilyvNaaaeellGlsreevlgkslldli 50 
                 + ++v+  +g +++ Naaa +l   + + v+++++++ +
  KIR65227.1  77 VTVVVTGPSGSCVLLNAAAMDLVREPGKNVVRRNVVERL 115
                 45666669***************************9976 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00028
                 SEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGB CS
         PAS  12 dpifvvDedgrilyvNaaaeellGlsreevlgkslldli 50 
                 + ++v+  +g +++ Naaa el   + + v+++++++++
  KIR65227.1 186 VTVVVTGPSGSCVLLNAAAMELVREPGKNVVRRNVVEVL 224
                 45666669***************************9986 PP

>> Cuticle_1  Crustacean cuticle protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0013       2.3      15      29 ..      71      86 ..      67      90 .. 0.83
   2 !    8.3   0.0    0.0013       2.3      15      29 ..     180     195 ..     176     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0013
   Cuticle_1 15 fthgva.nivliGpSG 29
                +  g a ++v++GpSG
  KIR65227.1 71 LDNGRAvTVVVTGPSG 86
                5667888********9 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0013
   Cuticle_1  15 fthgva.nivliGpSG 29 
                 +  g a ++v++GpSG
  KIR65227.1 180 LDNGRAvTVVVTGPSG 195
                 5667888********9 PP

>> VBS  Vinculin Binding Site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1    0.0011         2      50      88 ..      48      86 ..       9     114 .. 0.81
   2 !    8.1   0.0    0.0019       3.4      52      88 ..     159     195 ..     149     224 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
                HHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         VBS 50 qdsklasataeseevglrirttvqdLGrsvivlvqkaga 88
                 ++   +at++   vg r+r t  d Gr+v+v+v+  ++
  KIR65227.1 48 AEGGAPAATSDRFAVGTRLRVTNLDNGRAVTVVVTGPSG 86
                444455667777789999999999**********97766 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0019
                 HHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         VBS  52 sklasataeseevglrirttvqdLGrsvivlvqkaga 88 
                 +   +at++   vg r+r t  d Gr+v+v+v+  ++
  KIR65227.1 159 GGAPAATSDRFPVGTRLRVTNLDNGRAVTVVVTGPSG 195
                 344456667778********************98777 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0032       5.8       6      36 ..      76     107 ..      71     128 .. 0.80
   2 !    7.8   0.0    0.0021       3.8       6      43 ..     185     223 ..     180     225 .] 0.79

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0032
       PAS_4   6 dalavl.dpdgrvlyaNaaaaelfgappeell 36 
                 ++++v+ +p g ++ +Naaa++l++ p++ ++
  KIR65227.1  76 AVTVVVtGPSGSCVLLNAAAMDLVREPGKNVV 107
                 5555556******************9998876 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0021
       PAS_4   6 dalavl.dpdgrvlyaNaaaaelfgappeellGktlael 43 
                 ++++v+ +p g ++ +Naaa+el++ p++ ++ + + e+
  KIR65227.1 185 AVTVVVtGPSGSCVLLNAAAMELVREPGKNVVRRNVVEV 223
                 5555556********************999887776666 PP

>> ChapFlgA  Chaperone for flagella basal body P-ring formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0031       5.5      94     117 ..      61      84 ..      38      87 .. 0.85
   2 ?    6.1   0.0     0.006        11      95     117 ..     171     193 ..     148     196 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0031
    ChapFlgA  94 aegdqIrVknlqSgrivkarVtgs 117
                 a+g   rV nl  gr v+++Vtg+
  KIR65227.1  61 AVGTRLRVTNLDNGRAVTVVVTGP 84 
                 689999****************97 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.006
    ChapFlgA  95 egdqIrVknlqSgrivkarVtgs 117
                 +g   rV nl  gr v+++Vtg+
  KIR65227.1 171 VGTRLRVTNLDNGRAVTVVVTGP 193
                 58889****************97 PP

>> TonB_C  Gram-negative bacterial TonB protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0      0.01        18      19      54 ..      65     101 ..      63     111 .. 0.87
   2 ?    6.5   0.0    0.0062        11      19      54 ..     174     210 ..     172     222 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.01
                 EEEEEE-TTSBEEEEEEEEESSSS.CSHHHHHHHHTT CS
      TonB_C  19 tveftidpdGnvtnvkvvkssgse.iLdkaAleavrk 54 
                 ++++t   +G+   v v+ +sgs  +L++aA++ vr+
  KIR65227.1  65 RLRVTNLDNGRAVTVVVTGPSGSCvLLNAAAMDLVRE 101
                 57888899**************887999999999997 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0062
                 EEEEEE-TTSBEEEEEEEEESSSS.CSHHHHHHHHTT CS
      TonB_C  19 tveftidpdGnvtnvkvvkssgse.iLdkaAleavrk 54 
                 ++++t   +G+   v v+ +sgs  +L++aA+e vr+
  KIR65227.1 174 RLRVTNLDNGRAVTVVVTGPSGSCvLLNAAAMELVRE 210
                 57888899**************88799999****997 PP

>> DUF3483  Domain of unknown function (DUF3483)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   3.9e-05     0.069      62      94 ..       4      36 ..       2      68 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.9e-05
     DUF3483 62 artHvataGGlvaalaLvllayglalasasldw 94
                 rtHv++aG +v a+a+v++ +gl+ a+++ ++
  KIR65227.1  4 RRTHVLAAGAAVVASAVVAVGTGLGFAETAPAR 36
                59**********************998876655 PP

>> Barwin  Barwin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0044       7.9      50      79 ..      52      81 ..      18     129 .. 0.83
   2 ?    3.9   0.0     0.026        47      51      79 ..     162     190 ..     146     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0044
      Barwin 50 gpagargqascGkclrvtntatnaqvtvri 79
                 pa + ++ + G  lrvtn  ++ +vtv +
  KIR65227.1 52 APAATSDRFAVGTRLRVTNLDNGRAVTVVV 81
                4667788899**************999865 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.026
      Barwin  51 pagargqascGkclrvtntatnaqvtvri 79 
                 pa + ++   G  lrvtn  ++ +vtv +
  KIR65227.1 162 PAATSDRFPVGTRLRVTNLDNGRAVTVVV 190
                 566677788999***********999865 PP

>> Tic110  Chloroplast envelope transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   5.7    0.0055       9.8      18      64 ..      11      58 ..       3      82 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0055
      Tic110 18 aasavvlaaalaaGyglglkv.ggsraaalagavvlgaagaaaayaln 64
                a  avv++a++a+G glg++  + +r+    g v+++a g+a a +  
  KIR65227.1 11 AGAAVVASAVVAVGTGLGFAEtAPARQSVCQGSVTFSAEGGAPAATSD 58
                3345666678899*****998577777888999999999999887655 PP

>> DUF4126  Domain of unknown function (DUF4126)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   7.3    0.0091        16      81     154 ..      12      97 ..       5      99 .. 0.70
   2 ?    5.5   0.6    0.0068        12     106     154 ..     158     206 ..     136     208 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0091
     DUF4126  81 Gallaaaaagav.......e....ldpvlkavlavla.GgllAlvvhlvkaltRlasnastegfgnpvvstlEdvlavvlvllail 154
                 Ga+++a+a+ av       e     ++v +  +++ a Gg+ A+++  + ++tRl ++ +  g +  vv t   + +v+l  +a+ 
  KIR65227.1  12 GAAVVASAVVAVgtglgfaEtapaRQSVCQGSVTFSAeGGAPAATSDRFAVGTRLRVTNLDNGRAVTVVVTGPSGSCVLLNAAAMD 97 
                 444444443333333333423332255665555554449****************************************9999986 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0068
     DUF4126 106 aGgllAlvvhlvkaltRlasnastegfgnpvvstlEdvlavvlvllail 154
                  Gg+ A+++  + ++tRl ++ +  g +  vv t   + +v+l  +a+ 
  KIR65227.1 158 EGGAPAATSDRFPVGTRLRVTNLDNGRAVTVVVTGPSGSCVLLNAAAME 206
                 59999************************************99999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1597.46
//
Query:       KIR65228.1  [L=423]
Description: 4-aminobutyrate aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.4e-129  431.1   0.1   3.8e-129  430.9   0.1    1.0  1  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  430.9   0.1  2.1e-133  3.8e-129       6     405 ..      19     421 ..      14     422 .. 0.96

  Alignments for each domain:
  == domain 1  score: 430.9 bits;  conditional E-value: 2.1e-133
                  B--SC.EEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..S.EEEEESSHHHHHH CS
  Aminotran_3   6 ednll.lvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgld.kvflansGseAve 101
                  +  ++ + +++a G  +tdvdg++ +D++++iav+n+G++ P+vv+av+eq++ ++h++f +  +e++++++e+l++l+p+g++ +  l+nsG+eAve
   KIR65228.1  19 VGSVVgAYVDRAGGGTITDVDGREWIDFAAGIAVTNVGNSAPRVVAAVREQVERFTHTCFMVAPYESYVAVCEQLNALTPGGFEkRSALFNSGAEAVE 116
                  5555557899**************************************************************************899*********** PP

                  HHHHHHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHH.CHTCCCEEEEEE CS
  Aminotran_3 102 tAlKlarkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleeleale.kkkkdevaAviv 198
                  +A+K+ar+      at +++++ f++a+HGrt++++++t+++++yk+ fgpf+ ev+r++++++ +     +  +a+++++e +e ++ +++vaA+++
   KIR65228.1 117 NAVKIARH------ATGRPAVVVFDHAYHGRTNLTMALTAKNMPYKHRFGPFAGEVYRVPMSYPLRDGGL-SGAEAAARAIETVEkQVGAENVAALLI 207
                  ********......*************************************************9886554.588899999****9999********** PP

                  -SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-HH CS
  Aminotran_3 199 EpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfgGnpl 296
                  EpiqgegG+vv++ +fl +lre+++  +v++++DE+qtGf rTG++fA++h gv pDl+tlaK+++gGlpl+av+++ae+m+a++ g+ g+T+gGnp+
   KIR65228.1 208 EPIQGEGGFVVPALGFLPALREWATAAGVVFVADEIQTGFCRTGDWFACDHEGVVPDLVTLAKGIAGGLPLAAVTGRAELMDAVHAGGLGGTYGGNPI 305
                  ************************************************************************************************** PP

                  HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC.....HHHHHHHHHCTEE-EEETT..TEEEE--- CS
  Aminotran_3 297 acavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke.....keilkkakekGvlilsaGd..nvirllpp 387
                  aca+ala++e+++e +l+  a+++ga+l ++L+++++++  i+evRg+G+m+a+el+++ +  +     +++ ++ +++G+l+l++G   nv+r+lpp
   KIR65228.1 306 ACAAALASIETMHELDLAAAARRIGAMLADRLRAIAARDARIAEVRGRGAMLAVELVQPGTLVPdpaaaAAVSAACHAAGLLTLTCGTygNVLRFLPP 403
                  *************************************************************877999988899999********************** PP

                  TT--HHHHHHHHHHHHHH CS
  Aminotran_3 388 liitdeeidelleilkka 405
                  l+i+d+e++ +l+il +a
   KIR65228.1 404 LVISDAELARGLDILDAA 421
                  *************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3126.94
//
Query:       KIR65229.1  [L=478]
Description: phenylacetaldehyde dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.6e-159  530.6   0.0   2.9e-159  530.5   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.012   14.7   0.0      0.016   14.3   0.0    1.3  1  LuxC      Acyl-CoA reductase (LuxC)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  530.5   0.0  3.3e-163  2.9e-159       4     462 .]      18     472 ..      15     472 .. 0.98

  Alignments for each domain:
  == domain 1  score: 530.5 bits;  conditional E-value: 3.3e-163
                 -SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHH CS
      Aldedh   4 ses.etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryy 100
                 +++ +  + ++P+tgev+a++p ++a+dvdaa++aA +af++w++ ++ eR++ L k+ad++e+r+ el+++e+++tGkp + +++ e++ a+d +r++
  KIR65229.1  18 PSDgGYADLVDPCTGEVFAQAPVSGAADVDAAMRAASAAFETWRDSTPGERQKALLKLADAVEARAAELVDAEVRNTGKPRQLTAEeELPPAVDQFRFF 116
                 555355899*************************************************************************99999************ PP

                 HHHHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHH CS
      Aldedh 101 aelaeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevge 198
                 a++a+ leg+++    +g++++vrreP+Gv++++tPWN+Pl++a+wk+apalaaGNtvvlKP+++tp+s+lllae+++e  lP+gv+nvv+g ++++g+
  KIR65229.1 117 AGAARLLEGRSAGEyMAGHTSYVRREPIGVCAQVTPWNYPLMMAVWKIAPALAAGNTVVLKPSDTTPVSTLLLAEIAAE-FLPPGVFNVVCG-DRDTGR 213
                 *********88777579**************************************************************.8***********.99**** PP

                 HHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT-- CS
      Aldedh 199 alvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklk 297
                 +lv+hp  ++vs+tGst+ g+++a+aaa +lkr++lElGGk+p+++++daD+ +a+eai+ g ++naGQ C+aa+r+l   +i+d+fv++l+e+a++ +
  KIR65229.1 214 TLVSHPTPQLVSITGSTRAGMEVASAAAPDLKRTHLELGGKAPVVIFDDADVAAAAEAIAVGGYFNAGQDCTAATRVLAGPGIHDDFVAALAEQARNTR 312
                 *************************************************************************************************** PP

                 BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEE CS
      Aldedh 298 vgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyG 396
                  g p+d d+ +GPl +++ql++v ++v++  + +a + +Gg   ++  e+g+f++Ptv+++v++ ++i+q+E+FGPV++v +f+de+ea+++aN  +yG
  KIR65229.1 313 TGAPDDADVLYGPLNNANQLARVSGFVDRLPD-HASVQTGG---SRVGERGFFYSPTVVSGVRQADEIIQQEVFGPVITVQRFSDEDEAVRWANGVDYG 407
                 *****************************999.89******...7899*************************************************** PP

                 SEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 397 LaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 L+a+v+t+d  ra+r+++rl++G v++N+++ +  e+ p+gG+k+Sg+G++ + ++le+yt++k+v
  KIR65229.1 408 LSASVWTRDHGRAMRMTRRLDFGCVWVNTHIPFVSEM-PHGGFKHSGHGKDLSVYSLEDYTRIKHV 472
                 ***********************************99.**************************97 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.7e-06     0.016      80     135 ..     135     190 ..     123     309 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-06
        LuxC  80 keksyekaqprglvlhvlsgNvpll.pvmsilqglLvknvnllkvSssdpflaaall 135
                 ++ sy ++ p g+  +v++ N pl+ +v+ i+ +l ++n  +lk+S + p+ +  l+
  KIR65229.1 135 HT-SYVRREPIGVCAQVTPWNYPLMmAVWKIAPALAAGNTVVLKPSDTTPVSTLLLA 190
                 45.9*******************85389******************99998665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3444.93
//
Query:       KIR65230.1  [L=479]
Description: aldehyde dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.7e-134  446.5   0.6     1e-133  446.3   0.6    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  446.3   0.6  5.7e-138    1e-133       7     460 ..      17     470 ..      11     472 .. 0.95

  Alignments for each domain:
  == domain 1  score: 446.3 bits;  conditional E-value: 5.7e-138
                 SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH CS
      Aldedh   7 etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelae 105
                 +++ v++P++g+++++++ at+++v+aavaaA++   + a+lpa+ Ra+ L  + + l+er++e+a+l+t+e+Gkp++ araev +a++++r++ae+a+
  KIR65230.1  17 GELTVTHPYDGRPVGRTTLATPDQVEAAVAAAAAVAARAAALPAHARAAALDHVSRRLAERADEIADLITAENGKPVKWARAEVGRAVSTFRWAAEEAR 115
                 5689******************************9999************************************************************* PP

                 HHSEEEEEEC.....TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHH CS
      Aldedh 106 klegevlpss.....egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgea 199
                 + +ge    +     +g+ alvrr P G v+ I+P+NfPl+l+a+k+apa+a+G  +++KPa+ tplsalll el++e +lP+g++ v++   +e +++
  KIR65230.1 116 RFSGELQRLDtdpaaTGRIALVRRAPKGPVLGIAPFNFPLNLVAHKVAPAIAVGAPIIVKPAPATPLSALLLGELLAETELPAGMFAVLPL-PNERAAE 213
                 ****885553357889*************************************************************************99.5678889 PP

                 HHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTS....HHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHH CS
      Aldedh 200 lvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivleda....DldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaak 294
                 lv++p++ +vsftGs +vg  i +aa +  k vtlElGG+++++++ed     Dl  a+++i++ + + aGQ Cia++r++v+e +yd+f+ +lv+a++
  KIR65230.1 214 LVADPRLPVVSFTGSGPVGAAIRRAAPD--KHVTLELGGNAAAVICEDWntdeDLTFAAQRIATFSNYQAGQSCIAVQRVYVHEWLYDAFLPRLVAAVE 310
                 9***********************9884..9****************9722224566888888888899****************************** PP

                 T--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSS CS
      Aldedh 295 klkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdt 393
                 +l+ gdp d+ tdvGPl+s +++++ve++v+ea+ +ga++ +Gg      +++g+ + Ptvl++v+ d++++ eE+FGPVl+v ++++++ a +++Nd+
  KIR65230.1 311 ALRTGDPADPLTDVGPLVSVQAAQRVEAWVDEAVVAGATIEVGG------RREGATYPPTVLSGVPADAKVCAEEVFGPVLVVARVENDAAAFAAVNDS 403
                 ********************************************......689********************************************** PP

                 SEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEE CS
      Aldedh 394 eyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevk 460
                  yGL+agvft  l+ a+ + + l++G v + d   ++a+++p+gGvk Sg+Greg + ++++yt  +
  KIR65230.1 404 AYGLQAGVFTHRLDVAFAAHRVLDVGGVIVGDVPSYRADQMPYGGVKGSGVGREGLRSAMDDYTDAR 470
                 ****************************************************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3331.68
//
Query:       KIR65231.1  [L=140]
Description: hypothetical protein TK50_07050 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-13   51.0   0.0    1.6e-13   50.6   0.0    1.1  1  YbaB_DNA_bd   YbaB/EbfC DNA-binding family
  ------ inclusion threshold ------
       0.18   12.6   0.0       0.25   12.1   0.0    1.2  1  Occludin_ELL  Occludin homology domain
       0.33   10.9   3.0        8.9    6.3   0.4    2.3  2  Flg_hook      Flagellar hook-length control protein FliK


Domain annotation for each model (and alignments):
>> YbaB_DNA_bd  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   2.7e-17   1.6e-13       3      86 ..      23     106 ..      21     111 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 2.7e-17
                  HHHHHHHHHHHHHHHHTTSEEEEEETTTTEEEEEETT--EEEEEE-GGGG.GS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  YbaB_DNA_bd   3 qaqkmqkkmeeaqeelaekevegssggglVkVtvngkgevksikIdpslldpedkemLedlivaAvndAlkkaeeeaeeemskl 86 
                  q +++++ ++e+  +lae +v++ s +g V+V++ ++g+v+s+++ p++l+++d+  L++ i+++v +A  +a +++++ ++ +
   KIR65231.1  23 QYRQLRSGLDELRSRLAELRVTARSDDGQVTVVAGARGDVVSVELTPAALQARDARALSRKITSTVHRAAVAAVAATQDLVAGY 106
                  88999***************************************************************9999999999877765 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.2e-05      0.25       8      47 ..       8      47 ..       3      64 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.2e-05
  Occludin_ELL  8 eqrerYkaeFnkeYkeYkelhaeleevskkfseLerelke 47
                  e  ++ +a F++ + +Y++l + l+e++++++eL+   ++
    KIR65231.1  8 EANRALRARFDEVHGQYRQLRSGLDELRSRLAELRVTARS 47
                  566777899*************************876654 PP

>> Flg_hook  Flagellar hook-length control protein FliK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.4    0.0015       8.9      50      67 ..      24      41 ..      18      47 .. 0.87
   2 ?    4.8   0.1    0.0043        26      25      51 ..      50      76 ..      47      77 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0015
                HHHHHHTHHHHHHHHHCC CS
    Flg_hook 50 relLeqnlprLreaLaaa 67
                +++L++ l++Lr++La+ 
  KIR65231.1 24 YRQLRSGLDELRSRLAEL 41
                789************986 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0043
                EEEEEEEEEETTEEEEEEEE-SCHHHH CS
    Flg_hook 25 Gkvevkltlrggqlsvqltaenpetre 51
                G v+v    rg+ +sv+lt +  ++r+
  KIR65231.1 50 GQVTVVAGARGDVVSVELTPAALQARD 76
                89*****************99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1025.06
//
Query:       KIR65232.1  [L=114]
Description: hypothetical protein TK50_07055 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.095   13.2   1.5        1.8    9.1   0.1    2.0  2  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d


Domain annotation for each model (and alignments):
>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2    0.0055        98      49      74 ..      18      43 ..      13      47 .. 0.85
   2 ?    9.1   0.1   9.9e-05       1.8      47      99 ..      52     104 ..      49     105 .. 0.96

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0055
  T7SS_ESX_EspC 49 aatndavaaaeaarraagealaaast 74
                   a++++a +a+ + r++ g +laaas+
     KIR65232.1 18 ADLTSAGEAVTDRRAQVGGQLAAASA 43
                   67788999999999999999999875 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 9.9e-05
  T7SS_ESX_EspC  47 icaatndavaaaeaarraagealaaasteLadkLraAAaaYeatDeeaagald 99 
                    i+aa+ +  + +e++  +a ++l +a++ L +++  + ++  +tD ++ag+ld
     KIR65232.1  52 IGAAFEKQYRGFEETLLRAWAGLGRALEHLGEDVVRSVDNSVRTDAHNAGRLD 104
                    67899999*******************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 794.03
//
Query:       KIR65233.1  [L=1430]
Description: hypothetical protein TK50_07060 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-27   95.7   0.9    2.8e-26   92.7   0.0    3.0  3  Gln_amidase  Papain fold toxin 1, glutamine deamidase
    1.3e-05   25.5   0.0    2.4e-05   24.6   0.0    1.3  1  RelA_SpoT    Region found in RelA / SpoT proteins
  ------ inclusion threshold ------
      0.019   14.6  16.1      0.034   13.7  16.1    1.3  1  SseC         Secretion system effector C (SseC) like family


Domain annotation for each model (and alignments):
>> Gln_amidase  Papain fold toxin 1, glutamine deamidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.76   4.5e+03      58      83 ..     613     662 ..     567     673 .. 0.49
   2 !   92.7   0.0   4.6e-30   2.8e-26       1     111 [.     793     919 ..     793     920 .. 0.98
   3 ?   -2.1   0.0       1.3     8e+03      22      40 ..    1284    1302 ..    1213    1332 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.76
  Gln_amidase  58 l........................gaydklaqelrnagpgsraivivkw 83 
                  l                        ++y+++a  l+++g++  a  + + 
   KIR65233.1 613 LhednrryddsqelrsryeffqrraSEYAAYALSLKQRGQDYLATSWHRM 662
                  12222222222222222244445456677777777777766666666555 PP

  == domain 2  score: 92.7 bits;  conditional E-value: 4.6e-30
  Gln_amidase   1 nNCvdcslavadtl.gGepqvAap.l.srdeakgsiepllgergglervedplggklqell................gaydklaqelrnagpgsraiv 79 
                  +NC+dc+l++++t+ +G+p+v+ap + +++ a++  +pl+ge gg  rved++gg++q+l+                + + ++ ++lr++g+gs+a++
   KIR65233.1 793 INCLDCTLSLYETWmHGRPRVSAPrTfDAYAAGDISRPLGGELGGPGRVEDATGGRFQKLVdpddgtpagdrwsvvnRGFGSIERQLRAGGHGSYAFL 890
                  5************************99*********************************************************************** PP

  Gln_amidase  80 ivkwegkdvsgHafnavrndnGavvwlDpQsG 111
                  i+++eg+  ++Ha++a  n+nG v++lDpQsG
   KIR65233.1 891 ITTYEGG--GSHAWVAL-NQNGGVLYLDPQSG 919
                  *******..89******.*************9 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.3
  Gln_amidase   22 aplsrdeakgsiepllger 40  
                   +p sr++a+++i++++ge+
   KIR65233.1 1284 EPKSRQRAEDKIKKYKGEA 1302
                   4445666777777777776 PP

>> RelA_SpoT  Region found in RelA / SpoT proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0     4e-09   2.4e-05       4     110 ..    1286    1385 ..    1284    1386 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 4e-09
                  --HHHHHHHHHHCT--CCCCCCCSSTSEEEEEEESSHHHHHHHHHHHHT-SSSEEEEEEETSTSHCTTCCSEEEEEEEETTEEEEEEEEEEEEEHHH CS
   RelA_SpoT    4 KslysiieKlerkgikveekfeeitDligiRvivefkddvyevlelikklwdvkpkrfkdyiaepkengYrslHtvvssekgeekvlvEiQiRtiam 100 
                  Ks ++  +K+++ +     + +++tDl++  v +++  d y++l+ ++++  v++ +f+d +++p+ +gYr + +++     ++++++E  +   a 
  KIR65233.1 1286 KSRQRAEDKIKKYK----GEASRLTDLAAAKVEFDSLGDLYRALGRLREHPAVRIVEFNDRFRNPQGSGYRDVQLLL---RLSNDHVAEFRLHLAAL 1375
                  55555566666655....4899******************************************************9...88899999999999988 PP

                  HHHHHHHHHH CS
   RelA_SpoT  101 dawaeiehhl 110 
                  d++a  eh+l
  KIR65233.1 1376 DEVAVWEHSL 1385
                  8888888875 PP

>> SseC  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7  16.1   5.8e-06     0.034      90     259 ..      57     330 ..      51     352 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.8e-06
        SseC  90 vAgglmdaalgiadevvaaattkslideemqpimdvv...............................dkaqlageivgavv.aavavvaavvavgsaa 156
                 +Ag  +da +++adev +   +  ++ e+ ++  + v                                k+++  e+   vv ++  +vaav+++g+a+
  KIR65233.1  57 LAGPRADA-VAAADEVRSGYGGIGAVAEAFDAAWKRVaegdeaplpvllavsgdlgrlveecgcdiegAKLEVWIELGILVVeLLSLAVAAVLTAGAAS 154
                 56666666.888888888888888888888555555588888888888899999999999999999987777777776666667777888888888888 PP

        SseC 157 kgaaaavksg....aaklaeavaeaigkaikkaaekagkevaeqvskqvlnelakkatkva...................................... 213
                  +a+aa++ +     + + + +a+ + k++k+  ++ag+ +a+ v+++ +++la+ka++ +                                      
  KIR65233.1 155 PAAGAAIAASrfvvQQIFKKLLAQLARKTLKQGLKEAGERAAKRVAEGGMRGLARKAARGGleeaaeesgitlatqayqnstgrrhgldltdagmsalg 253
                 88888888888999999*****************************************99999999999999999999999999999999999999999 PP

        SseC 214 ..............................kavkegvvasavakalikavvv.aeggngiaqGainiqrAklqkkaa 259
                                               + ++e+++ +a   a+ +++v+  ++++++a+Ga++ + A+ ++  +
  KIR65233.1 254 glaggaaaplaglgrhatgraarvgehfgrEMTGEMIADQAANLATGQGLVSlEDAARAAASGATGSTTAQTDAALQ 330
                 99999999999999988888766665555544444443333333333333336455555555555555555444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 9738.50
//
Query:       KIR65234.1  [L=145]
Description: hypothetical protein TK50_07065 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1075.19
//
Query:       KIR65235.1  [L=431]
Description: erfk/ybis/ycfs/ynhg family protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-48  164.5   1.3    4.4e-48  163.7   1.3    1.4  1  Big_10    Bacterial Ig domain
    7.1e-16   58.9   1.0    2.9e-15   57.0   0.1    2.1  2  YkuD      L,D-transpeptidase catalytic domain
    4.4e-05   24.1   5.6      0.018   15.8   3.8    3.3  3  Big_5     Bacterial Ig-like domain


Domain annotation for each model (and alignments):
>> Big_10  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.7   1.3   7.3e-52   4.4e-48       1     182 []      65     249 ..      65     249 .. 0.97

  Alignments for each domain:
  == domain 1  score: 163.7 bits;  conditional E-value: 7.3e-52
      Big_10   1 akdvkpeepvtvtvedgkLtevsltdeeGkevegelsadktsWtsteklgygttYtltakakdadgkavektssftTv.apaktvsatltpedgstvGv 98 
                 akdv  +++++ t+++ k t+v+l+d++G++veg+l+ad++sW +++ l+yg+tYt t +a+++dgk +++ts+ftT+ +p k+v+++   +d+++vGv
  KIR65235.1  65 AKDVPASTAIAFTTKEAKDTAVELKDSAGAPVEGALAADGKSWLPEGVLKYGETYTATVTATGDDGKPAQATSTFTTMaKPGKQVRVSSFLGDNQVVGV 163
                 68999************************************************************************7469****************** PP

      Big_10  99 gqpisikFdkpv..edkaavekalkvttspavegafaWlsdsevdwRpkeYwkpgtkVtvkaklygvelgdgvygkedksvsftiG 182
                 g+p+ +kF++++  + ++ ++++++vt++pa+eg ++W+s +ev++Rpke+wk+g++++ +++  g+ lgdg yg++d +v+++ G
  KIR65235.1 164 GMPLIVKFSRAIpeDYRDDIQRRMTVTSTPAQEGIWHWVSPTEVRYRPKEFWKAGSTISYRVQAGGLPLGDGWYGRADLTVDIKTG 249
                 ************755599***************************************************************99876 PP

>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.17     1e+03      17      48 ..     113     144 ..     108     161 .. 0.77
   2 !   57.0   0.1   4.8e-19   2.9e-15       4     146 .]     254     373 ..     251     373 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.17
                 EETTEEEEEEE-BEBTTS.TTSE---EEEEEC CS
        YkuD  17 yengklvlsfpvsvGgkkegdreTPlGtfrik 48 
                  ++g++   + +++G+++++ + T ++t + k
  KIR65235.1 113 LKYGETYTATVTATGDDGKPAQATSTFTTMAK 144
                 47889888999****66666999999988776 PP

  == domain 2  score: 57.0 bits;  conditional E-value: 4.8e-19
                 EEEETTTTEEEEEEETTEEEEEEE-BEBTTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTTCECCCCEEE-STTS-EE CS
        YkuD   4 ivvdlaeqrllvlyengklvlsfpvsvGgkkegdreTPlGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskvalgkvkfvfpngsgiyi 102
                   vd +++r+ ++ ++gk++++ pvs+G   +++++  +Gt+ + +k r++     ++  ++e+ p+ +++++              +++  +++g +i
  KIR65235.1 254 MTVDNKTKRM-TVTKDGKVIKTIPVSLG---KKSTPSSSGTMVVIEKLRKTVF---DT--FEELGPEEGYRTKI------------DYAQRLTWGGEFI 331
                 5688888677.777**************...6699**********88877773...33..33333333332222............347789******* PP

                 EE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEEEE CS
        YkuD 103 HgtgapdlfergkgarrShGCirlseedakelyelvlvgtpvvi 146
                 H  +ap+ ++++ + + ShGC+++s ++  +l+++   g+p+ +
  KIR65235.1 332 H--AAPWSEGQQGSVNVSHGCVNVSMKNGAWLFDNTRIGDPITV 373
                 *..88877655336777***********************9987 PP

>> Big_5  Bacterial Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   3.8   2.9e-06     0.018       8     108 .]      57     141 ..      49     141 .. 0.74
   2 ?    1.4   0.0     0.085   5.1e+02      21      86 ..     163     228 ..     147     234 .. 0.66
   3 ?    4.2   0.1     0.011        68      17      84 ..     244     319 ..     239     326 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.9e-06
       Big_5   8 vstsPadgatgvavnaeitvtFseavdastvtaatvialsdsettavtgsydasgktvtitpsaeLaanttYtvtitagikDlagnalaapytniewsF 106
                 + t Pa+ a++v++ ++i +t  ea        +t ++l+ds++++v+g    + +     p++ L++++tYt+t+ta+  D        + t    +F
  KIR65235.1  57 TITEPAADAKDVPASTAIAFTTKEAK-------DTAVELKDSAGAPVEGA--LAADGKSWLPEGVLKYGETYTATVTATGDDGKPA----QAT---STF 139
                 4679*********9999988888843.......2334459999******9..556666678***************9885554422....333...667 PP

       Big_5 107 tT 108
                 tT
  KIR65235.1 140 TT 141
                 76 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.085
       Big_5  21 vnaeitvtFseav...dastvtaatvialsdsettavtgsydasgktvtitpsaeLaanttYtvtitag 86 
                 v  ++ v+Fs+a+     ++++   ++++s+++++ +  +  +s  +v  +p++ ++a+ t +  ++ag
  KIR65235.1 163 VGMPLIVKFSRAIpedYRDDIQRR-MTVTSTPAQEGIWHW--VSPTEVRYRPKEFWKAGSTISYRVQAG 228
                 345788999999966333333333.333355556666666..777999999999999999877777665 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.011
       Big_5  17 tgvavnaeitvtFseavdastvtaatvial....sdsettavtgs...ydasg.ktvtitpsaeLaanttYtvtit 84 
                 +++++  ++ +t ++  + +tvt++ ++      s +++ ++++s   + +++ ++ +++  +eL + + Y+ +i+
  KIR65235.1 244 VDIKTGPAVIMTVDNKTKRMTVTKDGKVIKtipvSLGKKSTPSSSgtmVVIEKlRKTVFDTFEELGPEEGYRTKID 319
                 556666677777777777777777766655677755555555555669889999999**************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2962.27
//
Query:       KIR65236.1  [L=423]
Description: erfk/ybis/ycfs/ynhg family protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-46  157.3   0.4    5.8e-46  156.8   0.4    1.3  1  Big_10    Bacterial Ig domain
    4.5e-18   66.1   0.1      1e-17   64.9   0.1    1.6  1  YkuD      L,D-transpeptidase catalytic domain
    4.1e-05   24.2   2.1    0.00043   20.9   0.5    2.9  3  Big_5     Bacterial Ig-like domain


Domain annotation for each model (and alignments):
>> Big_10  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.8   0.4   9.8e-50   5.8e-46      10     182 .]      81     258 ..      72     258 .. 0.94

  Alignments for each domain:
  == domain 1  score: 156.8 bits;  conditional E-value: 9.8e-50
      Big_10  10 vtvtv.edgkLtevsltdeeGkevegelsadktsWtsteklgygttYtltakakdadgkavektssftTv.apaktvsatltpedgstvGvgqpisikF 106
                 ++ ++ e+gk+t+ +lt ++G++veg++ ad++sW ++++l++gt+Yt t +a +a+g++ + ts+ftT+ +p+++++  l+  d++t+Gvg+p+  +F
  KIR65236.1  81 ISAKIpEGGKVTDLTLTAANGDKVEGRWRADGSSWVPNKPLKFGTRYTATVNAAGAGGETRQGTSTFTTMaKPKSMIASGLYLFDDKTYGVGMPVVTEF 179
                 444432789************************************************************83689999999******************* PP

      Big_10 107 dkpv..edkaavekalkvttspavegafaWlsd.sevdwRpkeYwkpgtkVtvkaklygvelgdgvygkedksvsftiG 182
                 +  +  +d+aav+k++ v+t+p++ ga++W+s+ ++  +R+ eYwkpgt+++v+++l+g+ l++g yg+ d+s++ +iG
  KIR65236.1 180 HPGIpeKDRAAVQKRMFVRTDPPQPGAWHWVSNgTQAYYRAPEYWKPGTTISVRIALAGIPLSNGKYGNVDRSATAKIG 258
                 **99999*************************9899****************************************999 PP

>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.1   1.7e-21     1e-17       6     146 .]     265     382 ..     262     382 .. 0.78

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 1.7e-21
                 EETTTTEEEEEEETTEEEEEEE-BEBTTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTTCECCCCEEE-STTS-EEEE CS
        YkuD   6 vdlaeqrllvlyengklvlsfpvsvGgkkegdreTPlGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskvalgkvkfvfpngsgiyiHg 104
                 vd a++++  ++++g+l+++ pvs+G   +++++  +Gt+ + +k +++     ++  r +++p +r+ +e               ++  +++g yiH 
  KIR65236.1 265 VDNATKQM-SVFQDGQLLRKIPVSLG---KKSTPSSSGTMVVMEKKESTV---FDT--RDDPDPANRYVTE------------IDFAQRLTWGGEYIH- 341
                 88999666.999**************...6699**********6666555...333..3444555554333............3457889********. PP

                 .ETCSS...CT...HHC.BSSSEEE-HHHHHHHHHHHHTTEEEEE CS
        YkuD 105 tgapdlfergk...garrShGCirlseedakelyelvlvgtpvvi 146
                  +ap+    ++   +++ ShGC+++s ++ak+l+ +  vg+p+ i
  KIR65236.1 342 -AAPWS---EHvqgRQNVSHGCVNVSMAQAKWLFSQTRVGDPITI 382
                 .66655...334468888************************987 PP

>> Big_5  Bacterial Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.5   7.2e-08   0.00043       7     108 .]      64     149 ..      56     149 .. 0.76
   2 ?   -0.2   0.0      0.28   1.7e+03      47      85 ..     200     236 ..     173     255 .. 0.69
   3 ?    0.3   0.1      0.18   1.1e+03      18      77 ..     250     321 ..     242     332 .. 0.56

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 7.2e-08
       Big_5   7 vvstsPadgatgvavnaeitvtFseavdastvtaatvialsdsettavtgsydasgktvtitpsaeLaanttYtvtitagikDlagnalaapytniews 105
                 +  +sPadga++ +v +ei+++  e  + ++     ++  +++ + +v+g   +  +     p+++L+ +t+Yt+t++a+   + g     ++ + + +
  KIR65236.1  64 L-KVSPADGAKNRPVSTEISAKIPEGGKVTDL----TL--TAANGDKVEGR--WRADGSSWVPNKPLKFGTRYTATVNAA--GAGG-----ETRQGTST 146
                 4.489***************999996655554....33..56778889998..888888899***************765..2222.....33444567 PP

       Big_5 106 FtT 108
                 FtT
  KIR65236.1 147 FTT 149
                 776 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.28
       Big_5  47 sdsettavtgsydasgktvtitpsaeLaanttYtvtita 85 
                  +++  a      ++g ++  +  + ++++tt +v i  
  KIR65236.1 200 DPPQPGAWHWV--SNGTQAYYRAPEYWKPGTTISVRIAL 236
                 33333333333..66799999999999*****9999964 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.18
       Big_5  18 gvavnaeitvtFseavdastvtaatvial........sdsettavtgs....ydasgktvtitpsaeLaant 77 
                 + +++a+i   F+  vd++t + +++ +         s +++ ++++s    +  +++  +++ +++ ++  
  KIR65236.1 250 DRSATAKIGRAFEMKVDNATKQMSVFQDGqllrkipvSLGKKSTPSSSgtmvVMEKKESTVFDTRDDPDPAN 321
                 456788888899999988887766444335555665533333333333334222333445555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2686.42
//
Query:       KIR65237.1  [L=313]
Description: AraC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-26   90.6   1.8    5.6e-26   90.6   1.8    1.9  2  HTH_18         Helix-turn-helix domain
    3.5e-21   74.8   0.0      2e-09   37.3   0.0    2.4  2  HTH_AraC       Bacterial regulatory helix-turn-helix proteins
    3.4e-20   72.5   0.1    4.5e-20   72.1   0.1    1.2  1  DJ-1_PfpI      DJ-1/PfpI family
    0.00031   20.5   0.0    0.00095   18.9   0.0    1.8  2  TetR_N         Bacterial regulatory proteins, tetR family
     0.0013   18.1   0.7     0.0033   16.8   0.2    2.0  2  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
  ------ inclusion threshold ------
      0.033   13.8   0.0       0.05   13.2   0.0    1.2  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
      0.048   13.5   0.2       0.22   11.4   0.2    2.2  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
      0.076   13.5   2.6       0.18   12.3   2.6    1.6  1  DinB_2         DinB superfamily
      0.085   12.7   0.6       0.21   11.4   0.1    2.0  2  HTH_23         Homeodomain-like domain
      0.091   12.8   0.1       0.24   11.4   0.1    1.6  1  HTH_Crp_2      Crp-like helix-turn-helix domain
      0.091   12.3   0.0       0.19   11.3   0.0    1.5  1  HTH_24         Winged helix-turn-helix DNA-binding
       0.32   11.4   4.4       0.11   12.9   0.9    2.1  2  HTH_31         Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.6   6.9e+03      22      36 ..      80      94 ..      78      97 .. 0.84
   2 !   90.6   1.8   3.8e-29   5.6e-26       1      80 [.     230     308 ..     230     309 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.6
                S-HHHHHHHHHHHHH CS
      HTH_18 22 ltpkeylrrlRlerA 36
                 tp+++l++lR  +A
  KIR65237.1 80 ATPTAVLDALRAAAA 94
                589999999999887 PP

  == domain 2  score: 90.6 bits;  conditional E-value: 3.8e-29
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 +a+++g+s+rtL+r+f++++g+tp ++l+++R+++A +lL e+t+l+v+++A ++GF+++++F++ f++++g++P++yrr
  KIR65237.1 230 IARHAGMSTRTLNRRFRDQTGTTPLRWLHWVRVHQAQHLL-ETTALPVDRVATQVGFGSTAAFRDRFKRITGTSPQAYRR 308
                 69************************************88.99************************************8 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   1.4e-12     2e-09       2      42 .]     218     258 ..     217     258 .. 0.92
   2 !   35.3   0.0   5.8e-12   8.6e-09       2      42 .]     270     308 ..     269     308 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.4e-12
                 HCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   2 renlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 r+n+   lt++diA ++g+S +++ r+F+ +tG tP  +++
  KIR65237.1 218 RDNARCQLTLADIARHAGMSTRTLNRRFRDQTGTTPLRWLH 258
                 66666689*******************************98 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 5.8e-12
                 HCCCSCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   2 renlstnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 +   +t l ++++A ++gf S   F+ +Fk++tG +P++yr+
  KIR65237.1 270 E---TTALPVDRVATQVGFgSTAAFRDRFKRITGTSPQAYRR 308
                 5...8999********************************96 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.1     3e-23   4.5e-20       2     164 ..       3     169 ..       2     170 .. 0.86

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 3e-23
                 EEEEEEETTBEHHHHHHHHHHHHH.......TTEEEEEEESSTSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHT CS
   DJ-1_PfpI   2 kvlvlladgvedvElivpvdvlkr.......agikvdvvsvdkeevkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaek 93 
                 +v+vl  d v   +l +p++v+ r       ag++v v   +  + +++  +++tv   ld v  a+ D++v+pG    p   +++++v++ ++ +a +
  KIR65237.1   3 TVAVLALDSVVPFDLATPMEVFHRtrladgrAGYRVLVCAAT--PTVTTGAFSITVPWGLD-V-LADADTVVVPGVSD-PA-AATPTAVLDALRAAAAN 95 
                 7999*******************888888889**99877766..66777778999998888.4.5569******9877.55.45578************ PP

                 T-EEEEETTTHHHHHHTTTTTTSEE--SGGGHHHHHHTTSEE.-SS..SEEEETTEEEESSGGGHHHHHHHHHH CS
   DJ-1_PfpI  94 gklvaaICagpqlLaaagvlkgrrvTsypavkdklekagaky.vdk..rvvvdgnlvTsrgpgaaiefalelle 164
                 g ++a+IC g+++Laa+g+l+grr+T+++  +d+l + + ++ vd    +v  g+++Ts+g+ a ++++l l++
  KIR65237.1  96 GARIASICGGAFTLAATGLLDGRRATTHWLATDQLAARHPRIqVDPnvLYVDNGQFLTSAGAAAGLDLCLHLIR 169
                 ***********************************66666552455778899999**************99985 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   6.3e-07   0.00095      17      39 ..     225     247 ..     224     250 .. 0.93
   2 ?   -3.2   0.0       5.1   7.7e+03      19      31 ..     276     288 ..     273     292 .. 0.57

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.3e-07
                 --HHHHHHHHTSSHHHHHHHTSS CS
      TetR_N  17 ttvreIAkrAGvskgalYryFps 39 
                 +t+++IA++AG+s ++l r+F++
  KIR65237.1 225 LTLADIARHAGMSTRTLNRRFRD 247
                 79*******************86 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.1
                 HHHHHHHHTSSHH CS
      TetR_N  19 vreIAkrAGvskg 31 
                 v+++A ++G +  
  KIR65237.1 276 VDRVATQVGFGST 288
                 5566666665444 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   2.2e-06    0.0033      27      50 ..     224     247 ..     213     249 .. 0.86
   2 ?   -2.8   0.0         3   4.5e+03      22      38 ..     267     284 ..     264     285 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.2e-06
  HTH_Tnp_ISL3  27 srsvkavArqlgvSwtTVwrildr 50 
                     + +++Ar+ g S++T++r++++
    KIR65237.1 224 QLTLADIARHAGMSTRTLNRRFRD 247
                   4799******************97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3
  HTH_Tnp_ISL3  22 ellles.rsvkavArqlg 38 
                   +ll  +  +v  vA q+g
    KIR65237.1 267 HLLETTaLPVDRVATQVG 284
                   455555678999999987 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.4e-05      0.05      39      89 ..      64     110 ..      51     122 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.4e-05
    GATase_3  39 edadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLG 89 
                 +dad v++pG +d +    ++  + + +a+++aa++g+++  iCGG   L 
  KIR65237.1  64 ADADTVVVPGVSDPA----AATPTAVLDALRAAAANGARIASICGGAFTLA 110
                 569999999966555....455566679******************87775 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00015      0.22      13      39 ..     217     246 ..     213     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
  HTH_AsnC-type  13 qed...aRisyaeLAervGlSestvlrRvr 39 
                    ++d   + ++ a++A+  G+S+ t  rR r
     KIR65237.1 217 MRDnarCQLTLADIARHAGMSTRTLNRRFR 246
                    4555667899******************76 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.6   0.00012      0.18      47     126 ..     188     269 ..     161     271 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
      DinB_2  47 lerlrgeeaprpgldpltppsaaealaylaevrarllallealtdadldrpltap..hpglgkltlgdvllfvlqHeqhHle 126
                 ler+ g+++ +++ +p++++++ e l ++ +  ar++ +l++++ ++ +++ t +  ++  + +t +++l++v  H ++Hl 
  KIR65237.1 188 LERAGGQAQFITHEPPAPEGAPLEPLLAWMRDNARCQLTLADIARHAGMSTRTLNrrFRDQTGTTPLRWLHWVRVHQAQHLL 269
                 445556555577888888876666666677779********************997777788889***************95 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1         4   5.9e+03      10      24 ..      88     103 ..      86     104 .. 0.68
   2 ?   11.4   0.1   0.00014      0.21      14      49 ..     218     254 ..     213     255 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4
      HTH_23  10 illllae.GlsvreIA 24 
                 +l+++a  G++++ I+
  KIR65237.1  88 ALRAAAAnGARIASIC 103
                 5677776688877776 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00014
      HTH_23  14 lae...GlsvreIAreLgvsrrTvyrwlkryreeGlegl 49 
                  ++    l+ ++IAr+ g+s rT+ r  +   + G  +l
  KIR65237.1 218 RDNarcQLTLADIARHAGMSTRTLNRRFRD--QTGTTPL 254
                 444556899****************76554..4666655 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00016      0.24      19      43 ..     222     246 ..     211     249 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
                 EEEHHHHHHHHHTTSSHHHHHHHHH CS
   HTH_Crp_2  19 elpltqeelAsmlGltretvsrils 43 
                 + +lt +++A++ G++  t++r ++
  KIR65237.1 222 RCQLTLADIARHAGMSTRTLNRRFR 246
                 4789******************887 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012      0.19      17      39 ..     224     246 ..     217     247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
      HTH_24  17 risqreLAerlglSpstvnrrlk 39 
                  ++ +++A++ g+S  t+nrr +
  KIR65237.1 224 QLTLADIARHAGMSTRTLNRRFR 246
                 4899*****************76 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       5.4     8e+03      49      57 ..      84      92 ..      75     100 .. 0.60
   2 ?   12.9   0.9   7.3e-05      0.11       5      40 ..     213     250 ..     210     282 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5.4
      HTH_31 49 alaralgld 57
                a+++al++ 
  KIR65237.1 84 AVLDALRAA 92
                444444443 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 7.3e-05
      HTH_31   5 lLralRe..raGLsqeevAerlgvsestlsrlEqGrrg 40 
                 lL+++R   r+ L++++ A+++g+s  tl+r  + + g
  KIR65237.1 213 LLAWMRDnaRCQLTLADIARHAGMSTRTLNRRFRDQTG 250
                 678888755779******************98886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2341.18
//
Query:       KIR65238.1  [L=139]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1039.50
//
Query:       KIR65239.1  [L=899]
Description: carbohydrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-32  110.9  31.8    8.3e-15   55.3   4.6    4.8  3  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    7.7e-30  103.8  11.8    1.6e-29  102.7  11.8    1.6  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
  ------ inclusion threshold ------
      0.048   13.0   0.0      0.048   13.0   0.0    3.7  4  DUF1565          Protein of unknown function (DUF1565)
      0.065   13.3   0.0       0.91    9.6   0.0    2.5  2  BiPBP_C          Penicillin-Binding Protein C-terminus Family
        5.3    7.5   5.4         20    5.6   0.1    3.1  3  ET               ET module


Domain annotation for each model (and alignments):
>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   5.5   1.5e-14   5.5e-11      16      89 .]     774     842 ..     759     842 .. 0.85
   2 !   55.3   4.6   2.3e-18   8.3e-15      23      89 .]     823     885 ..     817     885 .. 0.96
   3 !   42.3   5.8   2.6e-14   9.3e-11       1      55 [.     848     898 ..     848     899 .] 0.92

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 1.5e-14
                      EEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  16 tiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      +++  +sg++++v+++st+ng++vq w+c+g++nqqW  +       +++   + k+Ld +g++t+nGt+v++w
       KIR65239.1 774 RLVGGQSGRCVEVPNSSTTNGTQVQLWDCAGGTNQQWAYTA----GKQLTGYGN-KCLDANGAGTSNGTTVIIW 842
                      788899********************************742....345655443.7****************99 PP

  == domain 2  score: 55.3 bits;  conditional E-value: 2.3e-18
                      SEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  23 gkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      +k+Ld++g++t+ng++v  w+c+g++nqqW l+ +g    +++n++sg++Ld +g++tanGt++++w
       KIR65239.1 823 NKCLDANGAGTSNGTTVIIWDCHGGTNQQWNLNANG----TLTNVQSGLCLDANGAATANGTKIILW 885
                      89******************************8888....9*************9999********9 PP

  == domain 3  score: 42.3 bits;  conditional E-value: 2.6e-14
                      CCGEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEE CS
  RicinB_lectin_2   1 anQqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrle 55 
                      +nQqW+l    +   t++nv+sg++Ld++g++tang+++  w+c+g++nqqW l+
       KIR65239.1 848 TNQQWNL----NANGTLTNVQSGLCLDANGAATANGTKIILWSCNGGTNQQWSLR 898
                      69*****....4445*************************************985 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7  11.8   4.5e-33   1.6e-29       3     127 .]     773     895 ..     771     895 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 4.5e-33
                     EEEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEETTSEEEETT.TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTTEEEE CS
  Ricin_B_lectin   3 geirnvasgkCLdvegeska.gapvglydChgskgkQlwtltkdgeirskaqselCldvs..staegakvvlakChkgkgnqrWefdkdgtqirh 94 
                     g++++ +sg C++v+++s++ g++v+l+dC g+++ Q+w++t+ +++     +++Cld++  +t++g++v++++Ch g++nq+W+++ +gt + +
      KIR65239.1 773 GRLVGGQSGRCVEVPNSSTTnGTQVQLWDCAGGTN-QQWAYTAGKQLTGY--GNKCLDANgaGTSNGTTVIIWDCH-GGTNQQWNLNANGT-LTN 862
                     789999***************************88.******99999985..9***********************.999***********.*** PP

                     TTTSEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  95 kksgkCLdvkgasksne.klilkkcdsgsdsQkW 127
                      +sg+CLd++ga ++n+ k+il++c +g ++Q+W
      KIR65239.1 863 VQSGLCLDANGAATANGtKIILWSC-NGGTNQQW 895
                     ***********************99.******** PP

>> DUF1565  Protein of unknown function (DUF1565)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.3e-05     0.048       3      30 ..      47      79 ..      45      97 .. 0.73
   2 ?   -4.0   0.1         2   7.3e+03     118     143 ..     239     265 ..     210     272 .. 0.60
   3 ?   -0.2   2.8      0.15   5.2e+02     206     237 ..     525     556 ..     374     571 .. 0.51
   4 ?   -3.5   0.3       1.5   5.4e+03       9      35 ..     691     720 ..     689     739 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
     DUF1565  3 GndantGsksaPfktiTkAlllakage.....v 30
                Gndan+G+ ++Pf+t+ +A  +++a +      
  KIR65239.1 47 GNDANPGTLQSPFRTLQRARDAVRAVNssmtgD 79
                9*****************988887765444442 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2
     DUF1565 118 vliesa.sakianNtitgniadGievs 143
                 v++ ++ +a ia+  ++gn + G + +
  KIR65239.1 239 VALFQQpGAAIAQGAFNGNAQTGGSHK 265
                 333333378888888888888775554 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.15
     DUF1565 206 segsaGnNifsnnaeaDinisaaktqklvalg 237
                 ++ +a nN++s n+  D      +t ++++lg
  KIR65239.1 525 PTTTARNNTISHNHIIDTVQRLSDTAPIYTLG 556
                 23344444444444444444333444444444 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 1.5
     DUF1565   9 GsksaPfkt...iTkAlllakageviqlap 35 
                 G+ s P ++    T+A+ la+ag++ + a 
  KIR65239.1 691 GTASIPIRSagdATRAVWLAPAGTTTFTAG 720
                 788888887333599999999999766655 PP

>> BiPBP_C  Penicillin-Binding Protein C-terminus Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.25   8.8e+02      15      52 ..     569     607 ..     562     620 .. 0.65
   2 ?    9.6   0.0   0.00025      0.91      58      85 ..     727     754 ..     686     759 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.25
     BiPBP_C  15 afPadGailaldpdipkrqrlqlkargg..eaplrWlldg 52 
                 ++++ G+++ l+pd+     ++++      ++ ++Wl++ 
  KIR65239.1 569 QGVPSGHKYGLHPDE-GSAYITFRDNVLsvDKNVTWLINS 607
                 567777777777777.444555554444213377787775 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00025
     BiPBP_C  58 tkrgrelawqpepGrhrLtvvDaaGrvd 85 
                 ++++ ++a++ ++G++rL v+Da+G+++
  KIR65239.1 727 GGTDTSIAVPTSQGEYRLYVLDAQGNRS 754
                 44445555556**************986 PP

>> ET  ET module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0056        20      21      44 ..     780     803 ..     765     808 .. 0.91
   2 ?    1.2   1.0      0.13   4.8e+02      10      47 ..     810     848 ..     803     878 .. 0.70
   3 ?    1.5   0.4      0.11   3.8e+02      13      44 ..     856     888 ..     844     893 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0056
          ET  21 dGeCasvsltttvngqnvtlytCd 44 
                 +G+C  v  ++t ng++v+l+ C+
  KIR65239.1 780 SGRCVEVPNSSTTNGTQVQLWDCA 803
                 59******9**************7 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.13
          ET  10 kaistgaevaCdGe.CasvsltttvngqnvtlytCdpts 47 
                  a+++g++ +  G+ C  ++  +t ng++v ++ C   +
  KIR65239.1 810 WAYTAGKQLTGYGNkCLDANGAGTSNGTTVIIWDCHGGT 848
                 456788888889988********************8643 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.11
          ET  13 stgaevaCd.GeCasvsltttvngqnvtlytCd 44 
                 ++g+ ++ + G C  ++  +t ng+++ l++C 
  KIR65239.1 856 ANGTLTNVQsGLCLDANGAATANGTKIILWSCN 888
                 4555555555**********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (899 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 6018.53
//
Query:       KIR65240.1  [L=187]
Description: flavoprotein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-21   75.1   0.1    5.6e-21   74.9   0.1    1.1  1  Flavoprotein  Flavoprotein
  ------ inclusion threshold ------
      0.022   14.5   0.0       0.04   13.7   0.0    1.4  1  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.1   6.2e-25   5.6e-21       2     136 ..       5     150 ..       4     180 .. 0.82

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 6.2e-25
                   EEEEEE-SSCGGGCHHHHHHHHHHTTEEEEEEESCHHHHCCHHGGS....TCSSHHHHHHCT.........TESEEEEEEEEHHHHHHHHTT--SSH CS
  Flavoprotein   2 killgiTGsvaaikalellekLkkegievqvvltkaAkkfiskeklklaaredpilhielrr.........wadllviaPasantlakianGiadnl 89 
                   ++ ++++ +  a  +  l++  +++++ + v++t+ A++fi+   ++  +  +     ++r           ad+lviaPa++n++ kia+G+adn+
    KIR65240.1   5 HLQIVVCAAGPAPDVTTLINTAHEQSWTTAVTATPHATRFIDIPAIEELT--GAPVRSDYRTspgtrrslpTADALVIAPATYNSINKIALGLADNY 99 
                   78899*************************************65443333..33333333336777778889************************* PP

                   HHHHH..HTHCCTTEEEEE.--HHCCTCSTCHHHHHHH.H.T......... CS
  Flavoprotein  90 ltlil..ratakkpiliaPamnpamyenpqtlknlekl.e.egvtvikPse 136
                   +++++  ++++++p++i+P +n+a+ ++    + +++l +   +++++P++
    KIR65240.1 100 AMTTIaeLIGRHVPTVIVPFVNTALATRHPYRRAVASLrDeGVHILLGPDH 150
                   *****5444*****************************8535556678875 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.5e-06      0.04      10      37 ..      88     115 ..      84     115 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.5e-06
      HTH_38  10 ReeIerllaeGlslreIArrLgrspsTI 37 
                  ++I+ +la ++ + +IA ++gr+  T+
  KIR65240.1  88 INKIALGLADNYAMTTIAELIGRHVPTV 115
                 689*********************8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1324.10
//
Query:       KIR65241.1  [L=445]
Description: hypothetical protein TK50_07115 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-05   23.2   0.0       0.14   12.5   0.0    3.1  3  TPR_8          Tetratricopeptide repeat
    0.00012   22.3   5.4       0.18   12.1   0.3    3.7  3  TPR_12         Tetratricopeptide repeat
     0.0053   16.1   0.2     0.0053   16.1   0.2    2.8  3  UCR_Fe-S_N     Ubiquitinol-cytochrome C reductase Fe-S subuni
      0.008   16.5   4.8      0.016   15.6   2.5    2.7  2  HTH_31         Helix-turn-helix domain
  ------ inclusion threshold ------
      0.017   14.9   0.2      0.017   14.9   0.2    3.1  3  TAT_signal     TAT (twin-arginine translocation) pathway sign
      0.018   15.1   0.4      0.018   15.1   0.4    3.4  4  TPR_9          Tetratricopeptide repeat
      0.036   14.2   0.5       0.15   12.2   0.5    2.2  1  HTH_28         Helix-turn-helix domain
      0.071   12.9   0.6       0.23   11.3   0.2    2.1  2  HTH_23         Homeodomain-like domain
       0.13   12.1   1.4       0.24   11.3   0.3    2.1  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain
       0.92   10.3   9.1         22    6.1   1.3    5.4  4  TPR_4          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0039         7       1      30 [.     204     233 ..     204     236 .. 0.88
   2 ?   -1.9   0.0       3.1   5.6e+03       6      22 ..     342     358 ..     338     361 .. 0.75
   3 !   12.5   0.0   7.7e-05      0.14       2      33 ..     376     407 ..     375     408 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0039
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekalel 30 
                 ae+y+  gs++lklgd  +A  + e+ +++
  KIR65241.1 204 AELYHVVGSVLLKLGDRGMALVAAERSTRA 233
                 799*****************9998887765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.1
                 HHHHHHHHTT-HHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAke 22 
                 +  +i l+lgd   A+ 
  KIR65241.1 342 HRVNIALTLGDAGTAIT 358
                 56678899999988886 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 7.7e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                  +y+  +++y + g++e+   +++ a e +p+
  KIR65241.1 376 TLYVDVARAYTQWGRHEQGLNALRTAYEVAPE 407
                 689999***********************996 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1     0.003       5.4      43      75 ..     202     234 ..     195     236 .. 0.91
   2 ?    3.1   0.1     0.064   1.2e+02      10      36 ..     296     323 ..     286     333 .. 0.61
   3 !   12.1   0.3   9.9e-05      0.18      44      76 ..     374     406 ..     338     407 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.003
      TPR_12  43 ltattlrnLgrlyralgryeeAlelleealaia 75 
                 l+a+ ++  g ++++lg+   Al + e+++++a
  KIR65241.1 202 LVAELYHVVGSVLLKLGDRGMALVAAERSTRAA 234
                 6899************************99876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.064
      TPR_12  10 aavl.rrlgrydeAlellekaleiarrl 36 
                 +av  +r+ + d A ++l++a ++a+rl
  KIR65241.1 296 GAVAaARRDDRDTAHTMLDEATRAATRL 323
                 4444244666667777777776666666 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 9.9e-05
      TPR_12  44 tattlrnLgrlyralgryeeAlelleealaiae 76 
                  at + + +r+y ++gr+e+ l++l+ a+++a+
  KIR65241.1 374 KATLYVDVARAYTQWGRHEQGLNALRTAYEVAP 406
                 7999************************99986 PP

>> UCR_Fe-S_N  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.9       3.6   6.5e+03      21      31 ..      77      87 ..      73      89 .. 0.70
   2 !   16.1   0.2     3e-06    0.0053       5      28 ..     108     132 ..     104     140 .. 0.79
   3 ?   -4.2   0.5       6.5   1.2e+04      18      27 ..     282     291 ..     281     292 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.6
  UCR_Fe-S_N 21 avgaVGaaaaa 31
                a+g+ Gaaa  
  KIR65241.1 77 ATGTNGAAAST 87
                67778888865 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 3e-06
  UCR_Fe-S_N   5 esdeptRRDFLyiATgavgaV.Gaa 28 
                  +++ +RRDFL  A+++v+a  G+a
  KIR65241.1 108 PDGDVQRRDFLRSAAVSVAAApGVA 132
                 67899************99863555 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 6.5
  UCR_Fe-S_N  18 ATgavgaVGa 27 
                  T av++ Ga
  KIR65241.1 282 STDAVAVYGA 291
                 5889999887 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   2.5   8.7e-06     0.016       8      62 ..      14      70 ..       9      72 .. 0.87
   2 ?   -1.8   0.0       2.2     4e+03      45      60 ..     393     408 ..     386     410 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8.7e-06
      HTH_31  8 alReraGLsqeevAerlgvsestlsrlEq.Grrgrpspavlealaralg.ldpaera 62
                alR++a++s ++ Ae+lg  + t+ ++ + G + +p+ +  +al ++l  ++p+ r+
  KIR65241.1 14 ALRQAARMSVTAFAEHLGAARRTVAKWSSqGDNVIPRADMQAALDTVLArATPDVRE 70
                8**************************996777799999999999998746888876 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.2
      HTH_31  45 avlealaralgldpae 60 
                 + l+al +a+ + p+e
  KIR65241.1 393 QGLNALRTAYEVAPEE 408
                 4456666677766666 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.3       3.7   6.6e+03      15      19 ..      82      86 ..      76      90 .. 0.64
   2 ?   14.9   0.2   9.7e-06     0.017       2      18 ..     112     128 ..     111     135 .. 0.77
   3 ?   -2.0   0.9       2.2   3.9e+03      12      17 ..     296     301 ..     293     301 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.7
  TAT_signal 15 aAAaa 19
                +AAa 
  KIR65241.1 82 GAAAS 86
                34444 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 9.7e-06
  TAT_signal   2 lSRRdFLKgsAAaaAAa 18 
                 + RRdFL+ +A+  AAa
  KIR65241.1 112 VQRRDFLRSAAVSVAAA 128
                 67******887777665 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.2
  TAT_signal  12 AAaaAA 17 
                 +A+aAA
  KIR65241.1 296 GAVAAA 301
                 455554 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       5.7     1e+04      46      62 ..      17      33 ..      16      36 .. 0.78
   2 ?   -1.7   0.1       1.9   3.4e+03      34      49 ..     219     234 ..     212     252 .. 0.70
   3 ?   -2.5   0.1       3.3     6e+03      42      51 ..     295     304 ..     291     313 .. 0.70
   4 ?   15.1   0.4     1e-05     0.018      24      63 ..     370     413 ..     367     423 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5.7
       TPR_9 46 saAladLeaylalapda 62
                +aA++   a++++ ++a
  KIR65241.1 17 QAARMSVTAFAEHLGAA 33
                68999999999987755 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.9
       TPR_9  34 dRGlllaqlGclsaAl 49 
                 dRG++l+  ++   A+
  KIR65241.1 219 DRGMALVAAERSTRAA 234
                 6777776666655555 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.3
       TPR_9  42 lGclsaAlad 51 
                 +G+++aA++d
  KIR65241.1 295 RGAVAAARRD 304
                 6777777766 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 1e-05
       TPR_9  24 laPddpeerrdRGlllaqlGclsaAladLeaylalap....dap 63 
                 la + + ++ d ++++ q+G+ +++l++L ++ ++ap     +p
  KIR65241.1 370 LAERKATLYVDVARAYTQWGRHEQGLNALRTAYEVAPeeirCRP 413
                 66778999*****************************4444444 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   8.5e-05      0.15       8      32 ..      17      40 ..      12      43 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.5e-05
      HTH_28  8 llaaGhsvreaArelgisrrtvyrW 32
                ++a+ +sv++ A++lg  rrtv +W
  KIR65241.1 17 QAAR-MSVTAFAEHLGAARRTVAKW 40
                4444.8******************* PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00013      0.23      10      37 ..      14      40 ..      12      43 .. 0.85
   2 ?   -2.7   0.0       3.2   5.7e+03       2      13 ..      66      77 ..      65      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
      HTH_23 10 illllaeGlsvreIAreLgvsrrTvyrw 37
                +l+ +a ++sv++ A++Lg  rrTv +w
  KIR65241.1 14 ALRQAA-RMSVTAFAEHLGAARRTVAKW 40
                455555.9*******************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.2
      HTH_23  2 asereRlrilll 13
                + +reR+ +l++
  KIR65241.1 66 PDVRERFAALRA 77
                578999999986 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   0.00013      0.24      11      35 ..      14      38 ..      13      39 .. 0.94
   2 ?   -2.8   0.0       3.3   5.9e+03      32      42 .]      66      76 ..      64      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
  HTH_AsnC-type 11 aLqedaRisyaeLAervGlSestvl 35
                   aL++ aR+s+++ Ae +G ++ tv+
     KIR65241.1 14 ALRQAARMSVTAFAEHLGAARRTVA 38
                   8**********************97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.3
  HTH_AsnC-type 32 stvlrRvrrLe 42
                   + v++R ++L+
     KIR65241.1 66 PDVRERFAALR 76
                   7899**99986 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0       0.2   3.6e+02      10      26 .]     213     229 ..     208     229 .. 0.91
   2 ?    6.1   1.3     0.012        22       8      26 .]     297     315 ..     297     315 .. 0.94
   3 ?    1.2   0.0      0.46   8.2e+02       4      25 ..     340     361 ..     338     362 .. 0.81
   4 ?   -0.2   0.2       1.3   2.3e+03       8      25 ..     382     399 ..     379     400 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.2
       TPR_4  10 allalGdldeAraller 26 
                 +ll lGd   A+ ++er
  KIR65241.1 213 VLLKLGDRGMALVAAER 229
                 7999********99997 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.012
       TPR_4   8 ArallalGdldeAraller 26 
                 A a++++ d d+A ++l++
  KIR65241.1 297 AVAAARRDDRDTAHTMLDE 315
                 89**************986 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.46
       TPR_4   4 llaLArallalGdldeAralle 25 
                 ll +   +l lGd+ +A ++++
  KIR65241.1 340 LLHRVNIALTLGDAGTAITIAR 361
                 5667778999******988887 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.3
       TPR_4   8 ArallalGdldeAralle 25 
                 Ara+ + G++++ + +l+
  KIR65241.1 382 ARAYTQWGRHEQGLNALR 399
                 677777799999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3445.89
//
Query:       KIR65242.1  [L=61]
Description: hypothetical protein TK50_07130 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 431.44
//
Query:       KIR65243.1  [L=220]
Description: hypothetical protein TK50_07135 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-23   80.7   0.1      3e-08   33.7   0.1    3.2  4  Pentapeptide_4  Pentapeptide repeats (9 copies)
    3.8e-16   58.4   0.3    0.00021   20.9   0.0    4.5  4  Pentapeptide    Pentapeptide repeats (8 copies)
    2.9e-11   43.3   3.5    0.00012   22.2   0.1    4.4  4  Pentapeptide_3  Pentapeptide repeats (9 copies)
  ------ inclusion threshold ------
      0.019   14.8   0.0      0.038   13.8   0.0    1.7  1  Beta_helix      Right handed beta helix region
      0.075   13.2   0.0       0.13   12.4   0.0    1.4  1  CHCH            CHCH domain


Domain annotation for each model (and alignments):
>> Pentapeptide_4  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0039        14      48      72 ..      31      56 ..      28      68 .. 0.47
   2 !   32.3   0.0   2.3e-11   8.4e-08       5      61 ..      73     129 ..      69     135 .. 0.93
   3 !   33.7   0.1   8.4e-12     3e-08       3      74 ..     111     184 ..     110     187 .. 0.88
   4 !   23.5   0.0   1.3e-08   4.7e-05       7      68 ..     136     197 ..     131     206 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0039
  Pentapeptide_4 48 faevdlkrasFsgcnlknvnfsd.kl 72
                    ++++ + ++s+ g +l +v++++  l
      KIR65243.1 31 LSDATIENVSWRGGTLDGVTIRGsRL 56
                    33344444444444444444433223 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 2.3e-11
  Pentapeptide_4   5 rcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgc 61 
                      c   ++++s++++s + +++c +t++r++  ++++  l+dv f+++++ +asF+++
      KIR65243.1  73 GCEITRADFSGTTLSGISIERCAITGSRFTGIRLTDVRLKDVLFEGCRFDYASFTRV 129
                     599999************************************************986 PP

  == domain 3  score: 33.7 bits;  conditional E-value: 8.4e-12
  Pentapeptide_4   3 ftrcsfnncklsnvnFsearlrd.cnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klkd 74 
                     ++++ f++c +++++F+ +   +   F++c l+++++++c l ++ ++ ++l+r+++  c+l ++ +++  l+d
      KIR65243.1 111 LKDVLFEGCRFDYASFTRVAAAGaVAFVDCLLTDATWSSCRLPNTVLRSCQLARLELDSCQLHGADLRGnGLHD 184
                     78999***********9998777578999999*****************************9999998745665 PP

  == domain 4  score: 23.5 bits;  conditional E-value: 1.3e-08
  Pentapeptide_4   7 sfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnf 68 
                      f +c l++++ s +rl ++ +++c+l   ++d+c+l+ +d++++ l ++     nl +v++
      KIR65243.1 136 AFVDCLLTDATWSSCRLPNTVLRSCQLARLELDSCQLHGADLRGNGLHDLKTGLGNLHGVTL 197
                     55666666666666666666666666666666666666666666666666555555555555 PP

>> Pentapeptide  Pentapeptide repeats (8 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00068       2.5       2      34 ..      30      62 ..      30      64 .. 0.85
   2 !   20.9   0.0   5.9e-08   0.00021       1      40 []      74     113 ..      74     113 .. 0.95
   3 !   14.9   0.0   4.1e-06     0.015       1      30 [.      99     128 ..      99     135 .. 0.89
   4 !   18.0   0.3   4.5e-07    0.0016       2      40 .]     141     179 ..     137     179 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00068
                  B-TT-B-CCSCCEECCCESEEECT-B-TT-EEC CS
  Pentapeptide  2 nLsgAnLsganLsganlsgAnLtgAnlsgAdLs 34
                  +Ls+A  ++ +++g  l g + +g+ l g d s
    KIR65243.1 30 DLSDATIENVSWRGGTLDGVTIRGSRLVGVDVS 62
                  699999999999999999999999999998876 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 5.9e-08
                   -B-TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEECT CS
  Pentapeptide   1 AnLsgAnLsganLsganlsgAnLtgAnlsgAdLsganLsg 40 
                   ++ ++A++sg+ Lsg + +++  tg+ ++g +L++++L++
    KIR65243.1  74 CEITRADFSGTTLSGISIERCAITGSRFTGIRLTDVRLKD 113
                   6779********************************9986 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 4.1e-06
                   -B-TT-B-CCSCCEECCCESEEECT-B-TT CS
  Pentapeptide   1 AnLsgAnLsganLsganlsgAnLtgAnlsg 30 
                   ++++g +L+   L+++ ++g+ +++A++++
    KIR65243.1  99 SRFTGIRLTDVRLKDVLFEGCRFDYASFTR 128
                   57999**********************987 PP

  == domain 4  score: 18.0 bits;  conditional E-value: 4.5e-07
                   B-TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEECT CS
  Pentapeptide   2 nLsgAnLsganLsganlsgAnLtgAnlsgAdLsganLsg 40 
                    L++A  s + L ++ l+ + L + +l  ++L ga+L+g
    KIR65243.1 141 LLTDATWSSCRLPNTVLRSCQLARLELDSCQLHGADLRG 179
                   577777799****************************98 PP

>> Pentapeptide_3  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0034        12      11      46 ..      30      63 ..      25      65 .. 0.81
   2 !   22.2   0.1   3.3e-08   0.00012       2      47 ..      72     114 ..      71     115 .. 0.95
   3 !   19.1   2.1   2.9e-07    0.0011       3      47 ..      98     140 ..      97     150 .. 0.92
   4 !   10.4   1.3   0.00016      0.57       1      31 [.     116     145 ..     116     180 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0034
  Pentapeptide_3 11 dFrgatFsgaasFsnadFgsadFsgarFtgdvdFsg 46
                    d+++at ++  s ++ ++++++ +g+r   +vd s+
      KIR65243.1 30 DLSDATIENV-SWRGGTLDGVTIRGSRLV-GVDVSE 63
                    7889999999.899999999999999987.777665 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 3.3e-08
  Pentapeptide_3   2 sganFsgaadFrgatFsgaasFsnadFgsadFsgarFtgdvdFsga 47 
                     +g++ ++a dF+g+t sg  s +++ +++++F g r t dv+++++
      KIR65243.1  72 FGCEITRA-DFSGTTLSGI-SIERCAITGSRFTGIRLT-DVRLKDV 114
                     79999***.**********.******************.****985 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 2.9e-07
  Pentapeptide_3   3 ganFsgaadFrgatFsgaasFsnadFgsadFsgarFtgdvdFsga 47 
                     g++F+g  ++++++ ++   F++++F+ a+F ++   g+v F ++
      KIR65243.1  98 GSRFTGI-RLTDVRLKDVL-FEGCRFDYASFTRVAAAGAVAFVDC 140
                     899****.******99996.9*********999999999999887 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00016
  Pentapeptide_3   1 FsganFsgaadFrgatFsgaasFsnadFgsa 31 
                     F+g++F+ a +F+++   ga+ F ++ +++a
      KIR65243.1 116 FEGCRFDYA-SFTRVAAAGAVAFVDCLLTDA 145
                     677777777.777777777764444443333 PP

>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.1e-05     0.038      13      65 ..      56     122 ..      22     180 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
                 EESEEEES-SS-SEEE-SSS-.............EEES-EEES-SS-SEEE-TT..-S-EEES-EEE CS
  Beta_helix  13 iknntisnsggyGiylrgssn............vvienneiannsgsGiyilgs..snntisnntis 65 
                 + ++++s+sg+ G  l g++             + ie++ i++++++Gi+++ +  +++ ++++++ 
  KIR65243.1  56 LVGVDVSESGWEGGSLFGCEItradfsgttlsgISIERCAITGSRFTGIRLTDVrlKDVLFEGCRFD 122
                 1222222223333333333334444444444444444444444444444444444444444444443 PP

>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.6e-05      0.13       7      34 ..     136     162 ..     134     163 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHCTSSTTTTHHHHHHHHHHHC CS
        CHCH   7 eylkClkdnsdefskCrkefeafkeCvk 34 
                 ++ +Cl +    +s Cr  ++ +++C+ 
  KIR65243.1 136 AFVDCLLTDAT-WSSCRLPNTVLRSCQL 162
                 799********.**************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1517.33
//
Query:       KIR65244.1  [L=295]
Description: hypothetical protein TK50_07150 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-48  164.3   0.0    4.8e-48  163.8   0.0    1.2  1  Replic_Relax  Replication-relaxation


Domain annotation for each model (and alignments):
>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.8   0.0   2.7e-52   4.8e-48       1     183 [.      20     217 ..      20     220 .. 0.93

  Alignments for each domain:
  == domain 1  score: 163.8 bits;  conditional E-value: 2.7e-52
  Replic_Relax   1 LrlLaehrvlTtrqiarllfashratarrrLarLrelgllsrlrkrvggarggsepyvYaLtpkGarllaaqra..epeprskrdrrereassrflp 95 
                   L +L++h+vlT+ qia++lf+s +  ++rrL++L++l+l++r+r++  +a+ggs+py+Y+++++Ga+++aa r+  +p+++++r  r+r++ssr l 
    KIR65244.1  20 LGWLYDHGVLTSFQIAHALFPSLDF-CQRRLRTLYRLRLVARFRPQ--RADGGSYPYHYVIDQLGAEVVAAGRDerPPRRDHARVERRRWTSSRTLE 113
                   89***********************.*******************9..9999*****************99999977777999999*********** PP

  Replic_Relax  96 HtlavnelflalaaaaRetpdaalteWr.esaktka..fgk........kaktllkPDaflsweedg....fflEvDtgteslktlvrKirkYeela 177
                   H+l+vn +f+ la++aR++pd++l eW  e a+ +   f++        +++++++PD+++ w   g    ff+E+Dtg e+l +l  K+ +Y+e +
    KIR65244.1 114 HRLGVNGFFTGLAGYARTHPDVRLGEWLsEAACRRSgvFTRpgdpalvrAYQPRVRPDGYGLWVVRGgrvpFFVEYDTGGEPLSVLTGKLVGYREWF 210
                   ****************************9999998853444************************4469*************************988 PP

  Replic_Relax 178 e.sgveq 183
                   +  g+++
    KIR65244.1 211 AaLGRAW 217
                   7555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2142.51
//
Query:       KIR65245.1  [L=110]
Description: hypothetical protein TK50_07155 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 814.65
//
Query:       KIR65246.1  [L=132]
Description: hypothetical protein TK50_07165 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0025   17.6   0.0      0.004   17.0   0.0    1.3  1  Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
     0.0049   17.0   0.0     0.0075   16.4   0.0    1.3  1  HTH_17      Helix-turn-helix domain
  ------ inclusion threshold ------
       0.21   11.4   0.2       0.21   11.4   0.2    1.7  2  HTH_23      Homeodomain-like domain


Domain annotation for each model (and alignments):
>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   6.6e-07     0.004       7      32 ..      39      64 ..      36      74 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.6e-07
  Phage_AlpA  7 reVeqktglsrstiYrlikdgeFPkk 32
                +  ++ +g+srs+ Yrl    +FP +
  KIR65246.1 39 PTAASVLGISRSQAYRLAATDTFPTP 64
                5567899*****************87 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.3e-06    0.0075       5      46 ..      39      82 ..      37      84 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.3e-06
      HTH_17  5 eEaAelLgvsrstvyrlirrgelpaa...kiGrrwriprsdleew 46
                  aA  Lg+srs +yrl+ +  + ++   + G r+ +p + l + 
  KIR65246.1 39 PTAASVLGISRSQAYRLAATDTF-PTpliRAGTRIIVPVAGLLRL 82
                56999******************.665777888888887777665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   3.5e-05      0.21      19      37 ..      37      55 ..      25      58 .. 0.79
   2 ?   -3.6   0.1       1.8   1.1e+04      36      39 ..     120     123 ..     117     126 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.5e-05
      HTH_23 19 svreIAreLgvsrrTvyrw 37
                + +++A  Lg+sr++ yr 
  KIR65246.1 37 TLPTAASVLGISRSQAYRL 55
                7899*************96 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.8
      HTH_23  36 rwlk 39 
                 rw++
  KIR65246.1 120 RWRH 123
                 5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 997.47
//
Query:       KIR65247.1  [L=490]
Description: hypothetical protein TK50_07170 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-17   61.8   0.1    1.5e-16   60.7   0.1    1.5  1  Phage_integrase  Phage integrase family
    2.1e-08   34.3   0.0    5.9e-08   32.9   0.0    1.8  2  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.1   1.6e-20   1.5e-16      13     167 ..     290     462 ..     280     467 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 1.6e-20
                      HCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEE............EEECSSSSEEEEECTHHHHHHHHHHHHHH....... CS
  Phage_integrase  13 aaleeslkirdklllellyetGlRisEllsLrvkdldlengvilvh............eregKgskeravplseealellkellska....... 87 
                      +++ + +  r ++l  l+  tGlR +E+++L+++dldl+ ++++v              + +++  e +++l  e + +l++  +++       
       KIR65247.1 290 DHTYD-AGDRLYALYHLITFTGLRRGEACGLHWDDLDLDANTLTVRwqlvqqgwattiDTPKTTDSEATIALDTETTTVLRTHRAQQnrerlaa 382
                      55555.55577888999999**********************************9998666666777778887666666666555553344444 PP

                      CHCCTTTSBSSBETTSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHH.HHHH CS
  Phage_integrase  88 leeaeksellfaskrgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssistt.qiYt 167
                        +  k+ l+f    g +l   +v + f+++  +ag+  p++ H+lRh +at  l agv ++v+ + l Hss   t   Y 
       KIR65247.1 383 GTTWTKTGLVFTTPTGGRLHPADVTDHFHHLTTQAGLP-PIRLHDLRHGAATMGLAAGVHMKVISNRLRHSSPHFTaTFYG 462
                      46666666999999***********************9.**********************************99966665 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   6.6e-12   5.9e-08       1      53 [.     129     180 ..     129     184 .. 0.92
   2 ?   -3.1   0.0       1.1     1e+04       8      23 ..     279     294 ..     278     296 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 6.6e-12
                      ..HHHHHHHHHHHHHHH-HHHHHHHHHHHTTTHHHHTTSSBGGG--HHHHHHH CS
  Phage_int_SAM_3   1 tFsefleeWleeykprvkesTyatyksiiknhIlPyFgniklkkItpadiqkf 53 
                      t  ++l  Wl   ++++k  T+++y+++i+ h++P++g+++++ ++p +i   
       KIR65247.1 129 TMTDYLTDWLTG-RNTIKKGTVRSYEGHIRLHLIPHLGHLRIDRLRPGHIDAM 180
                      56799999**99.99**********************************9865 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.1
                      HHHHHHHHHH-HHHHH CS
  Phage_int_SAM_3   8 eWleeykprvkesTya 23 
                      +W  e+  r   +Ty+
       KIR65247.1 279 IWTPEHTGRFLDHTYD 294
                      7999999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3383.69
//
Query:       KIR65248.1  [L=1266]
Description: hypothetical protein TK50_07175 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-09   37.4   0.5    3.9e-08   33.4   0.5    2.7  1  NACHT     NACHT domain
    2.2e-06   28.0   0.0     0.0011   19.2   0.0    2.7  2  AAA_28    AAA domain
    0.00067   20.1   0.0     0.0078   16.6   0.0    2.4  1  AAA       ATPase family associated with various cellular acti
     0.0024   18.3   4.7     0.0064   16.9   0.3    3.5  3  AAA_16    AAA ATPase domain
     0.0025   17.6   0.9     0.0046   16.7   0.1    1.9  2  AAA_30    AAA domain
     0.0043   17.4   0.0     0.0091   16.3   0.0    1.5  1  AAA_19    AAA domain
     0.0088   15.1   0.1      0.018   14.1   0.1    1.4  1  MeaB      Methylmalonyl Co-A mutase-associated GTPase MeaB
  ------ inclusion threshold ------
      0.012   15.6   0.3       0.03   14.2   0.3    1.7  1  NTPase_1  NTPase
      0.015   15.6   0.1      0.089   13.1   0.1    2.4  1  AAA_22    AAA domain
       0.12   12.6   0.0       0.38   10.9   0.0    1.9  1  AAA_33    AAA domain
       0.17   11.9   0.0       0.39   10.8   0.0    1.6  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain
       0.27   11.1   0.0       0.51   10.2   0.0    1.4  1  Rad17     Rad17 P-loop domain


Domain annotation for each model (and alignments):
>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.5   2.6e-11   3.9e-08       3     162 ..     260     451 ..     258     455 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 2.6e-11
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-..................-HCHH.HCCCCTS--SSS-CCHHHHCCSCCCEE. CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna...............rsladl.lfsqlpepaapvsevwavllelperlL. 84 
                 v+++G +G+GKTtL+q la+  ++  l+++  +l+    l+e sr  +a                 ++ +  +++l +++++ + vw +l+++   l  
  KIR65248.1 260 VVVTGGPGQGKTTLVQTLAQVHRAALLDAVDPQLLSPAALQESSRVAAAlrrlalpmpgtarfpFWVDAVaFAEHLEQSQEADRSVWHFLARRYATLIk 358
                 89***************************997787778888888877778888888877776653333330344455555555559999999999999* PP

                 ..................EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE..EEEE--TCCHHHHHHHHC CS
       NACHT  85 ..................lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeqleeaivlevegfsesrrkqlvrky 162
                                   li+Dg+De++   ++++++++ + L +  r  +   + +++t+rp++ ++  e l  +   ++e+++  ++  ++++ 
  KIR65248.1 359 tavdvpslrqfaytnptlLIIDGYDEMAFFRQAATAEHIAEFLDDV-RM-SQLDTAIVVTSRPQSYEKDLERLGFK-LWQLEPLGPIDAISYAEQL 451
                 ****************************966666677777777554.33.2446789*********9977777666.7999999988888888776 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   7.4e-07    0.0011       1      62 [.     259     338 ..     259     356 .. 0.61
   2 !    5.9   0.0    0.0096        14      15      49 ..     770     805 ..     769     828 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 7.4e-07
      AAA_28   1 kivitGgestGKTtlleaLaar.........gypvv.pEaareileeklakgedalp.........wvedllafaervlee 62 
                 k+v+tGg++ GKTtl++ La+          + + + p a  e  +  +a ++ alp         wv d++afae++++ 
  KIR65248.1 259 KVVVTGGPGQGKTTLVQTLAQVhraalldavDPQLLsPAALQESSRVAAALRRLALPmpgtarfpfWV-DAVAFAEHLEQS 338
                 79******************632334444444444445555555555555555555533333333343.666666665554 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0096
      AAA_28  15 lleaLaargypvvpEaareileekl.akgedalpwv 49 
                 ll+ La+r++++ +Eaar +l++ + ++ + +lp+v
  KIR65248.1 770 LLNLLAKRDFRWSAEAARALLDQASpEQLTWMLPDV 805
                 8999*****************998865555666654 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.2e-06    0.0078       1     121 [.     260     428 ..     260     434 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.2e-06
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS..........................................................STTH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk..........................................................yvge 41 
                 v+++G pG GKT+l++ +a+   + +l    ++lls                                                           ++ +
  KIR65248.1 260 VVVTGGPGQGKTTLVQTLAQVHRAALLDAVDPQLLSPaalqessrvaaalrrlalpmpgtarfpfwvdavafaehleqsqeadrsvwhflarryaTLIK 358
                 5789*****************999999999999997788888888999999999999999999999999999999999999999855543333333333 PP

                 HHHHHHHHHHHHHHTS.....TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHS CS
         AAA  42 sekkirelfkeakeka.....kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr 121
                 ++ ++  l       +     +p+ l+iD  d++a  r       +  +++++ ++ld+v+ ++   + i++t rp+++++ l r
  KIR65248.1 359 TAVDVPSL-------RqfaytNPTLLIIDGYDEMAFFR-------QAATAEHIAEFLDDVRMSQL-DTAIVVTSRPQSYEKDLER 428
                 33333333.......13446568999999999999999.......77888999999999988744.6889999999999988874 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3   4.3e-06    0.0064      12     149 ..     247     387 ..     237     415 .. 0.51
   2 ?   -2.1   0.0       2.9   4.3e+03      80     139 ..     546     598 ..     516     602 .. 0.53
   3 ?    0.6   0.1      0.43   6.4e+02      72     123 ..    1127    1189 ..    1089    1202 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.3e-06
      AAA_16  12 LlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala...a 107
                 L+++l  + +g    v+++G +G GK++lv++l+ ++ ++   +l +   ql s ++++   +++ +  l r  l ++ +a ++ w ++   a+a   +
  KIR65248.1 247 LHQLLTEL-TGA-TKVVVTGGPGQGKTTLVQTLA-QVHRA--ALLDAVDPQLLSPAALQESSRVA-A-ALRRLALPMPGTARFPFWVDAV--AFAehlE 336
                 55555544.343.4688*****************.56655..23333333332333333333333.2.3333334444444455554422..1111111 PP

      AAA_16 108 vpelagaea..........srllellkrllallsrder.....plvlvlDdlqwade 149
                       +++          +r + l+k +++  s  ++     p++l++D  +   +
  KIR65248.1 337 -----QSQEadrsvwhflaRRYATLIKTAVDVPSL-RQfaytnPTLLIIDGYDEMAF 387
                 .....111122223445556666666666655554.335777788888888775444 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.9
      AAA_16  80 ellrqlldeaesaeleawrekleealaavpelagaea..srllellkrllallsrderplvl 139
                 +l  + ++++++ +l+++r+  +++++ ++      +    + +++ ++++++++  r lvl
  KIR65248.1 546 QLSGESDQRSNALSLDRFRAIVHSSVEGAA------PasGNVEAVVEKIIRFARQ--R-LVL 598
                 344444444556666666666666555222......2223344444444455554..4.554 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.43
      AAA_16   72 laqalareellrqllde..aesaeleawrekleealaavpelagaea.............srllell 123 
                  la    + ++l+ l+++  a++++ + w++  e +l++++++++ +              ++l+++l
  KIR65248.1 1127 LA----EPTVLARLCTRiaARTSNSATWQALHEVWLGPGQPAPAPLQqllgatrpatltdRDLHRAL 1189
                  33....3344555555555558899*****9999999444444443333444336644444444444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   3.1e-06    0.0046      13      95 ..     254     380 ..     244     407 .. 0.57
   2 ?   -3.0   0.1       3.4   5.1e+03      35      67 ..     719     755 ..     718     793 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.1e-06
      AAA_30  13 lltsgdrvavltGpAGtGKttalkalreaweaag........grviglAptgkaAkvLa..............eelgieastiakllkrlk........ 81 
                 l++ +   +v+tG++G GKtt++++l+++++aa          + ++l  ++++A++L+                  ++a   a+ l++ +        
  KIR65248.1 254 LTGAT--KVVVTGGPGQGKTTLVQTLAQVHRAALldavdpqlLSPAALQESSRVAAALRrlalpmpgtarfpfW---VDAVAFAEHLEQSQeadrsvwh 347
                 44444..489*********************9954677754444445555667777777222222222221110...2222222222222244444444 PP

      AAA_30  82 ...................grarlepgtllivD 95 
                                    ++ ++++ tlli+D
  KIR65248.1 348 flarryatliktavdvpslRQFAYTNPTLLIID 380
                 444555555555556666644555555666665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.4
      AAA_30  35 lkalreaweaaggrviglAptgkaAkv.La...eelg 67 
                 +++ +e+w+++ ++++ lA  + a+++ L+   e +g
  KIR65248.1 719 MEQTTELWTNDLKKLAYLAVAAPASEEwLSalaERVG 755
                 7888999999988888888888888765432224444 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.1e-06    0.0091      10      43 ..     257     290 ..     250     403 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.1e-06
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkpe 43 
                 ++ ++vt+GpG GKT+++++  ++  ++   +++
  KIR65248.1 257 ATKVVVTGGPGQGKTTLVQTLAQVHRAALLDAVD 290
                 56799*************9998877666544444 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   1.2e-05     0.018      14      52 ..     242     280 ..     232     295 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHH CS
        MeaB  14 eakellerllakaGraqvvGltGvPGaGkstlvealgle 52 
                 +++  l++ll++   a++v +tG PG Gk tlv+ l++ 
  KIR65248.1 242 DSRYALHQLLTELTGATKVVVTGGPGQGKTTLVQTLAQV 280
                 56777888888877788889**************99764 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3     2e-05      0.03       1      22 [.     259     280 ..     259     285 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
                 EEEEE--TTSSHHHHHHHHHHH CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlel 22 
                 kv++TG pG+GKtTlv+ ++++
  KIR65248.1 259 KVVVTGGPGQGKTTLVQTLAQV 280
                 689**************99876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   5.9e-05     0.089       6     126 ..     258     414 ..     253     424 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.9e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee............erpevvfvtlpsstsskdllrellralglelka...................... 70 
                 + +vvtG +G GKTtl+++l++ + ++a  +             e+++v                + lr l l+  +                      
  KIR65248.1 258 TKVVVTGGPGQGKTTLVQTLAQVH-RAALLDAvdpqllspaalqESSRV---------------AAALRRLALPMPGtarfpfwvdavafaehleqsqe 340
                 5579*****************987.333333333333333333322222...............22222222222223344555555555553222333 PP

      AAA_22  71 ........erlsseellealeqalrarav...................ielliiDEaqhlr...seealeeLrsllnl...srkgvqli 126
                                          +r++                   + lliiD  + +    +++  e++ ++l++   s+ +++++
  KIR65248.1 341 adrsvwhfL---------------ARRYAtliktavdvpslrqfaytnPTLLIIDGYDEMAffrQAATAEHIAEFLDDvrmSQLDTAIV 414
                 333333333...............33333344444444445555588888888888888766654666666666666555555555555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00025      0.38       2      30 ..     260     288 ..     260     367 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00025
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllss 30 
                 v++ G pG GK+tl++ l++ + a ll+ 
  KIR65248.1 260 VVVTGGPGQGKTTLVQTLAQVHRAALLDA 288
                 678999***************99999875 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00026      0.39       3     121 ..     261     454 ..     259     461 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
                 EEESSTTSSHHHHHHHHHHHHHHTT--EEEEE.EEESSCCCCHHTTEB-HHHH.............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx.............................................. RF
        CbiA   3 iastkGGvGKTtlaanLaralarrglrVllvD.aDpqannlaileglendiep.............................................. 54 
                 ++ +  G GKTtl+ +La+       r +l+D +Dpq  + a + + + +                                                 
  KIR65248.1 261 VVTGGPGQGKTTLVQTLAQVH-----RAALLDaVDPQLLSPA-ALQESSR--Vaaalrrlalpmpgtarfpfwvdavafaehleqsqeadrsvwhflar 351
                 6777789*******9999955.....56****99***77777.3333333..13478999999999999999999999999999999999999999999 PP

                 .........................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHHHHHHHHHC.TS-EEE. CS
                 .........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx. RF
        CbiA  55 .........................................dlkrllellealgkkkalllkiagvvlnrvdgeneetllkealeelkqry.gvpvlg. 110
                                                          +++ + e+l +++ ++   l+ a vv  r++      + +++le+l +++  ++ lg 
  KIR65248.1 352 ryatliktavdvpslrqfaytnptlliidgydemaffrqaaTAEHIAEFLDDVRMSQ---LDTAIVVTSRPQ------SYEKDLERLGFKLwQLEPLGp 441
                 999999999999999999999999999999999999998888888888888887763...777777777754......456667776666665555555 PP

                 ..EEE--CCHCCC CS
                 ..xxxxxxxxxxx RF
        CbiA 111 ..viprdeavaea 121
                    i++ e+++ a
  KIR65248.1 442 idAISYAEQLIAA 454
                 5577777777666 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00034      0.51      48      90 ..     260     302 ..     246     313 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00034
       Rad17  48 LLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdnqks 90 
                 ++++G +G gk+t v+ L++ +   l + ++p +l  +  q+s
  KIR65248.1 260 VVVTGGPGQGKTTLVQTLAQVHRAALLDAVDPQLLSPAALQES 302
                 5789**************************9999876666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.52
# Mc/sec: 7298.40
//
Query:       KIR65249.1  [L=490]
Description: hypothetical protein TK50_07185 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 3136.12
//
Query:       KIR65250.1  [L=120]
Description: hypothetical protein TK50_07190 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.027   14.5   0.1      0.084   12.9   0.1    1.8  2  BMC       BMC domain
       0.14   12.1   0.0       0.21   11.5   0.0    1.3  1  Bys1      Blastomyces yeast-phase-specific protein


Domain annotation for each model (and alignments):
>> BMC  BMC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.39   3.5e+03      14      28 ..      23      37 ..      20      39 .. 0.77
   2 ?   12.9   0.1   9.3e-06     0.084      26      57 ..      87     119 ..      85     120 .] 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.39
                HHHHHHHHHHSSEEE CS
         BMC 14 ieaaDaalKaAnVel 28
                + aaD  +  A+V+ 
  KIR65250.1 23 VLAADPRTRQARVRT 37
                679999999999975 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 9.3e-06
                 EEEEEEEECTTT.CEEEEEEESHHHHHHHHHHH CS
         BMC  26 Velvgvekvggg.kvtviitGdvaaVkaAveag 57 
                 V++ + +++ g+ + tv i+Gdv aV aA+  +
  KIR65250.1  87 VTITRTDLPDGArHETVSISGDVDAVVAALRSA 119
                 899999999997689**************9877 PP

>> Bys1  Blastomyces yeast-phase-specific protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.3e-05      0.21      43      76 ..      70     103 ..      57     114 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.3e-05
        Bys1  43 ydyynekyrggsgdgvsltlshtegrdssnsett 76 
                 ydy + +++g +g+ +s+t++ t+ +d +  et 
  KIR65250.1  70 YDYLKSRWGGRAGQQISVTITRTDLPDGARHETV 103
                 9**************************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 891.43
//
Query:       KIR65251.1  [L=1564]
Description: hypothetical protein TK50_07195 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.015   15.4   1.6        0.3   11.3   0.1    3.7  4  TPR_2     Tetratricopeptide repeat
        8.4    7.3  17.9        2.3    9.1   0.4    5.5  4  TPR_4     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.24   2.2e+03       3      30 ..     841     868 ..     840     869 .. 0.85
   2 ?   11.3   0.1   3.3e-05       0.3       2      32 ..    1030    1060 ..    1029    1061 .. 0.94
   3 ?   -0.6   0.0      0.21   1.9e+03      11      28 ..    1246    1263 ..    1241    1268 .. 0.77
   4 ?   -3.4   0.0       1.7   1.5e+04       3      18 ..    1434    1449 ..    1433    1456 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.24
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                 +l n ++a   +g+ ++A+  + kA e+
  KIR65251.1 841 WLLNTAEAQVDAGRRDQARGTWGKAEEI 868
                 67888999999********999998765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 3.3e-05
       TPR_2    2 ealynlGlayyklgdyeeAleafekAleldP 32  
                  ea+  l++ ++ +++++eAl   ++Al+l++
  KIR65251.1 1030 EAHLFLARTLRVNDQLQEALTEARRALSLAE 1060
                  8999************************986 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.21
       TPR_2   11 yyklgdyeeAleafekAl 28  
                  +++  ++ eA++ ++k +
  KIR65251.1 1246 HRYIWEHGEAIAEYQKLV 1263
                  56666788*******987 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 1.7
       TPR_2    3 alynlGlayyklgdye 18  
                  +l +lG +y+++ d+ 
  KIR65251.1 1434 LLQALGSIYLRRADLT 1449
                  5789999999987765 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.3         2   1.8e+04      17      24 ..     646     653 ..     645     654 .. 0.68
   2 ?    9.1   0.4   0.00026       2.3       4      24 ..     842     862 ..     841     864 .. 0.88
   3 ?   -0.7   0.1      0.38   3.4e+03       8      19 ..    1006    1017 ..    1001    1017 .. 0.80
   4 ?    6.6   1.6    0.0016        15       2      26 .]    1030    1054 ..    1029    1054 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2
       TPR_4  17 ldeArall 24 
                 ldeA+a +
  KIR65251.1 646 LDEALARA 653
                 67888765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00026
       TPR_4   4 llaLArallalGdldeArall 24 
                 ll+ A+a+ ++G+ d+Ar ++
  KIR65251.1 842 LLNTAEAQVDAGRRDQARGTW 862
                 5789*************9765 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.38
       TPR_4    8 ArallalGdlde 19  
                     ll++Gd++e
  KIR65251.1 1006 SLSLLLQGDAEE 1017
                  5679*****997 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0016
       TPR_4    2 rallaLArallalGdldeAraller 26  
                   a+l+LAr+l    +l eA++ ++r
  KIR65251.1 1030 EAHLFLARTLRVNDQLQEALTEARR 1054
                  69********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.49
# Mc/sec: 9566.89
//
Query:       KIR65252.1  [L=583]
Description: hypothetical protein TK50_07205 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-05   23.5   0.0    0.00011   22.0   0.0    1.7  2  PLDc_2    PLD-like domain


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.33   5.9e+03      80     103 ..     105     137 ..      92     144 .. 0.63
   2 !   22.0   0.0   6.3e-09   0.00011      80     116 ..     291     330 ..     262     336 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.33
      PLDc_2  80 gslHaKlylid...gk......tvivGSsNltk 103
                 + +H Kl+  +   ++       ++v S Nltk
  KIR65252.1 105 HLFHPKLWALRfldDTtgevslRLLVLSRNLTK 137
                 568888887765532244455566666777765 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 6.3e-09
      PLDc_2  80 gslHaKlylid...gktvivGSsNltkrgldlnlElnvvi 116
                 + lHaK+y+++   +  v++GS+N t++++ +n El+v++
  KIR65252.1 291 HGLHAKVYVVEkghQARVLLGSANATDAAFGGNVELLVEL 330
                 679*******8655559*******************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 4180.44
//
Query:       KIR65253.1  [L=411]
Description: hypothetical protein TK50_07210 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   10.8   0.0        0.2   10.2   0.0    1.1  1  Lon_2     Putative ATP-dependent Lon protease


Domain annotation for each model (and alignments):
>> Lon_2  Putative ATP-dependent Lon protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   1.1e-05       0.2     379     427 ..      14      62 ..       6      75 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 1.1e-05
       Lon_2 379 ytevveelvelgkklsqRdekavkktvsgllKllfPdeevtkeeleell 427
                  ++ ++el++l ++++ Rde ++ ++  ++  llfP ++v ++++++ll
  KIR65253.1  14 DQQRMRELLKLFSDTESRDELGIGQVRDAFSDLLFPGTSVLQNRARYLL 62 
                 5678999*********************************999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 2506.83
//
Query:       KIR65254.1  [L=256]
Description: hypothetical protein TK50_07215 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-36  125.8  14.8    2.2e-36  125.6  14.8    1.0  1  DUF429    Protein of unknown function (DUF429)


Domain annotation for each model (and alignments):
>> DUF429  Protein of unknown function (DUF429)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6  14.8   1.3e-40   2.2e-36       1     210 []       5     226 ..       5     226 .. 0.91

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 1.3e-40
      DUF429   1 GvDla..gcrtgwaavaledgrlrlvdv..eae..eivaalaallaaaeeaavvaiDaPiglpe.........................retggRaaDr 68 
                 GvDla    rt++a++++  +r+ + dv  ++   +iv+a +++       ++v++D+P+g+pe                         r++++R +D+
  KIR65254.1   5 GVDLAaaDERTAMATIEWLSDRAVVRDVvlDVGdaQIVKASQDA-------DKVGLDCPLGWPEpfvalvtahrsghvtiadgdaarwrRRLAYRLTDE 96 
                 9******************9999996665533345555555555.......************************************************ PP

      DUF429  69 aarkllarrgasvfpvpar.aalaagkglserafgllpklrevdelldarpelrgrvvEvhPeaafvalnggaplakkkktaegraeRrellara.iae 165
                 ++r   + +g+++++v a+ +a+aa      r++gll+ l+++++++d  ++++g++vEv+P+aa++++ g+  +++k +     a++++l+ ++  a+
  KIR65254.1  97 VVR---ETTGIIPLSVAADrIAHAAF-----RCAGLLAMLAAAGHDVD--RRGDGKIVEVYPAAALCRW-GLTYRGYKGR--GQKAQHADLVTALcAAA 182
                 ***...99******************.....****************9..9999***************.*********4..44889999999888566 PP

      DUF429 166 llleseakkeklvaadDvlDAvacaltArraarGraeslpgdpee 210
                 + le  a ++ +++++D++DAv++al Ar+aa Gra + p+d+++
  KIR65254.1 183 PWLELGAFEALCRRSHDAFDAVVAALNARAAAIGRA-TRPDDEQR 226
                 6677777789**************************.99*99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1810.05
//
Query:       KIR65255.1  [L=686]
Description: hypothetical protein TK50_07225 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-07   29.9   0.0    1.3e-06   28.4   0.0    1.7  2  NACHT     NACHT domain
    3.9e-05   23.9   0.0    0.00011   22.5   0.0    1.7  1  AAA_22    AAA domain
  ------ inclusion threshold ------
      0.011   16.1   0.4      0.039   14.3   0.0    2.1  2  AAA_16    AAA ATPase domain
      0.048   13.1   0.0        8.4    5.7   0.0    2.3  2  TniB      Bacterial TniB protein
      0.068   12.4   0.0      0.096   11.9   0.0    1.2  1  DUF2075   Uncharacterized conserved protein (DUF2075)
      0.078   13.1   0.0       0.12   12.5   0.0    1.2  1  DUF87     Helicase HerA, central domain
       0.18   10.9   0.0        1.2    8.3   0.0    1.9  2  NB-ARC    NB-ARC domain


Domain annotation for each model (and alignments):
>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   5.1e-10   1.3e-06       1     158 [.     138     298 ..     138     301 .. 0.75
   2 ?   -3.2   0.0       2.6   6.8e+03      97     130 ..     319     353 ..     312     366 .. 0.51

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 5.1e-10
                 SCEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-.....-HCHHHCCCCTS--SSS-C........CHHHHCCSCCCEEEEEE- CS
       NACHT   1 rlvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna..rsladllfsqlpepaapvse........vwavllelperlLlilDg 89 
                 r +++ G aG GKT+L+ +l++++ +++l ++  +++ +l+  +    ++     +a+ l+++ p++++p +          +a  l   + +L +lDg
  KIR65255.1 138 RRLVILGTAGAGKTVLATRLVRDLLRDRLAGQ--PVPVLLPADTWHPGEQHlrEWMAQRLAQDHPHLGGPAPApgrsrdrrTMATHLIESRLVLPVLDG 234
                 6789***************************5..8999999999988777777789999999999999999989999997633333333344556**** PP

                 STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHH....HCTTSSCE..EEEE--TCCHHHHH CS
       NACHT  90 lDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrd....leeqleeaivlevegfsesrrkql 158
                 lD + + l       + t L++     l  e +l++t+r +  +d    ++ +l++a+v+ev +++  +++ +
  KIR65255.1 235 LDMIGDGLLG----TALTELNG-----LGAEEPLVVTSRVEPYQDavrtAGCGLSRAAVVEVLPLTLAEARNY 298
                 ****985544....33333333.....4566899999996544443333888888889999998887776666 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.6
                 TCH.........HHHHHCTTTT.T--EEEEEEECC CS
       NACHT  97 lgqkekqpvrtlLselirkkll.peasllltvrpr 130
                 +++  +q++rt L  ++  ++  ++++  +t+ p 
  KIR65255.1 319 PDAPLAQALRTPLMAWLAHTIYaTTTPTAATADPA 353
                 55544455555555555554331444555555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.3e-08   0.00011       8     112 ..     140     250 ..     134     262 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.3e-08
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka......erlsseellealeqalraravielliiDEa 100
                 lv+ G +G+GKT+l+ rl++ l ++  a ++ p ++  +  +++  + l++++++ l +++ +      ++++s++ +++ ++ +++r v  l ++D  
  KIR65255.1 140 LVILGTAGAGKTVLATRLVRDLLRDRLAGQPVPVLLPADTWHPG-EQHLREWMAQRLAQDHPHlggpapAPGRSRDRRTMATHLIESRLV--LPVLDGL 235
                 799*******************8666655555555566666666.9***************99*****6666666666666666666666..9999999 PP

      AAA_22 101 qhlrs....eealeeL 112
                 + +       +al+eL
  KIR65255.1 236 DMI-GdgllGTALTEL 250
                 998.533455555554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.5e-05     0.039      10      61 ..     125     171 ..     123     262 .. 0.76
   2 ?   -1.9   0.1       1.5   3.8e+03      96      96 ..     353     353 ..     279     426 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
      AAA_16  10 eqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcd 61 
                 + L+ +l r   +  + +++ G +G GK+ l+++l r l +d+   l+g+ +
  KIR65255.1 125 DDLAGLLARRLPH--RRLVILGTAGAGKTVLATRLVRDLLRDR---LAGQPV 171
                 5667777766666..5688*************99999999985...555554 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
      AAA_16  96 a 96 
                 a
  KIR65255.1 353 A 353
                 1 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0065        17      66     113 ..      39      87 ..      19      92 .. 0.85
   2 ?    5.7   0.0    0.0033       8.4      23      87 ..     127     188 ..     122     205 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0065
        TniB  66 daekv.pvlvvqappkpdekrlyaaiLealgaplkararvskleqqvlr 113
                 ++++v +v + +app+  ++ l ++ Leal  ++++++r ++ ++qvlr
  KIR65255.1  39 NHNIVnQVSYRSAPPTHANDVLVSKALEALARQVETERRRDEERSQVLR 87 
                 34444489999*********************************99986 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0033
        TniB  23 LeeLleypkrkrmpnlllvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekrly 87 
                 L+ Ll++   +r   l+++G    GKt+++ +  r+  ++ +   + vpvl+     +p e++l 
  KIR65255.1 127 LAGLLARRLPHR--RLVILGTAGAGKTVLATRLVRDLLRD-RLAGQPVPVLLPADTWHPGEQHLR 188
                 555555544444..799***************99887655.477778899887777777776665 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.8e-05     0.096       4      29 ..     140     165 ..     137     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.8e-05
     DUF2075   4 vlVtGvaGtGKtvvllnllaeledde 29 
                 +++ G aG+GKtv++ +l+ +l +d+
  KIR65255.1 140 LVILGTAGAGKTVLATRLVRDLLRDR 165
                 6899***************9995544 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.6e-05      0.12      23      50 ..     137     164 ..     128     175 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.6e-05
       DUF87  23 trHlAilgsTGsGKSntvavLleellek 50 
                  r+l ilg++G+GK+ ++  L++ ll++
  KIR65255.1 137 HRRLVILGTAGAGKTVLATRLVRDLLRD 164
                 68999********************963 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00045       1.2      23      43 ..     140     160 ..     124     166 .. 0.83
   2 ?   -0.3   0.0      0.19   4.9e+02     104     131 ..     649     676 ..     639     678 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00045
                 EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  23 valvGmgGvGKttlakqilnk 43 
                 + + G +G GKt+la+  +++
  KIR65255.1 140 LVILGTAGAGKTVLATRLVRD 160
                 6799************99987 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.19
                 TEEEEEEEE-SHHHH.....HHHHCHTT CS
      NB-ARC 104 rfllvlDDVweeedwdkigvvlparenr 131
                 r++  lDD ++  +++++g++++ r+ r
  KIR65255.1 649 RTMAFLDDAVDRGVLRRVGAAYQFRHPR 676
                 88899***************99866655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4825.81
//
Query:       KIR65256.1  [L=130]
Description: hypothetical protein TK50_07230 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 961.42
//
Query:       KIR65257.1  [L=365]
Description: hypothetical protein TK50_07250 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2526.91
//
Query:       KIR65258.1  [L=219]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-24   84.4   0.3    1.1e-23   83.5   0.2    1.5  2  Response_reg  Response regulator receiver domain
    1.6e-20   72.9   0.0    2.6e-20   72.3   0.0    1.3  1  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.2   1.2e-27   1.1e-23       1     112 []       3     113 ..       3     113 .. 0.99
   2 ?   -2.8   0.0      0.78     7e+03      94     103 ..     171     180 ..     161     199 .. 0.56

  Alignments for each domain:
  == domain 1  score: 83.5 bits;  conditional E-value: 1.2e-27
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vliv+D+ +++e++++ l+++ +  v+ ++dg+ alel+  +++d+++lD ++p ++G ++++ i     e +vi+lta    +++v +l++gadd+
    KIR65258.1   3 VLIVEDEAVLAEATAEGLRQQAM-AVDLCADGATALELISINRYDVVVLDRDLPVVHGDDVCRAIVSAGGEARVIMLTASIGLDERVYGLNIGADDY 98 
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   l+Kpf+ +eL+++++
    KIR65258.1  99 LTKPFALAELVARVQ 113
                   ***********9985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.78
                   ESEEEESSG- CS
  Response_reg  94 addflsKpfd 103
                   a++ l K +d
    KIR65258.1 171 AEELLEKAWD 180
                   3333333332 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   2.9e-24   2.6e-20       4      77 .]     148     217 ..     144     217 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 2.9e-24
                  EE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   4 veltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  + l++kef++Le+L++ +g  vs eeLle+ w+e+ d+ +++v+v + +LRkkL+     p +Iet+ gvGYrl
   KIR65258.1 148 IPLSRKEFAVLEVLMRAEGTAVSAEELLEKAWDEHIDPFTNAVRVTMMTLRKKLGS----PAVIETLSGVGYRL 217
                  89******************************************************....89**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1786.58
//
Query:       KIR65259.1  [L=230]
Description: ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-31  107.9   0.0    6.7e-31  107.6   0.0    1.1  1  ABC_tran        ABC transporter
    2.8e-05   24.1   0.1       0.03   14.1   0.0    2.1  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    8.8e-05   22.9   1.0    0.00018   22.0   1.0    1.5  1  AAA_16          AAA ATPase domain
    0.00011   21.7   0.0     0.0033   16.9   0.0    2.1  1  SMC_N           RecF/RecN/SMC N terminal domain
    0.00042   20.0   0.0    0.00076   19.2   0.0    1.4  1  AAA_29          P-loop containing region of AAA domain
     0.0064   16.4   0.0     0.0094   15.9   0.0    1.2  1  RsgA_GTPase     RsgA GTPase
      0.007   16.7   0.2      0.011   16.1   0.2    1.7  1  AAA_22          AAA domain
  ------ inclusion threshold ------
      0.011   15.6   0.1      0.019   14.9   0.1    1.4  1  Ploopntkinase3  P-loop Nucleotide Kinase3
      0.011   15.4   0.0      0.059   13.1   0.0    1.9  2  AAA_24          AAA domain
      0.012   15.7   3.6       0.16   12.1   3.6    2.6  1  AAA_33          AAA domain
      0.015   15.0   0.4       0.04   13.7   0.1    1.7  2  AAA_30          AAA domain
      0.094   12.3   1.2       0.38   10.3   1.2    2.1  1  AAA_25          AAA domain
        0.1   11.9   0.2       0.17   11.2   0.2    1.3  1  FtsK_SpoIIIE    FtsK/SpoIIIE family
       0.11   12.2   0.0       0.22   11.3   0.0    1.5  1  IstB_IS21       IstB-like ATP binding protein
       0.14   11.8   0.1        0.2   11.4   0.1    1.2  1  PRK             Phosphoribulokinase / Uridine kinase family


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6   0.0   5.6e-34   6.7e-31       2     136 ..      22     169 ..      21     170 .. 0.92

  Alignments for each domain:
  == domain 1  score: 107.6 bits;  conditional E-value: 5.6e-34
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHC.EEEE-SS--S-TTSBHHHH.............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxx.xxxxxxxxxxxxxxxxxxx.............xxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrke.igvlpqepqlfpeltvren.............esde 83 
                 +  +l +++ge++a+vG++G+GKSt+l l+  l + t+G++ ++g+ +++   ++l+ lr++ ig+++q  +l ++l++ren              +++
  KIR65259.1  22 RAANLRVHAGEMIAVVGPSGSGKSTMLHLMGTLDRATAGTVSVNGHRVDRltdRRLSALRASwIGFVFQSFHLTDGLSARENlvtaqlyrgvparLRRA 120
                 66899********************************************998866666665449**********************9999999888888 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++al+++gl + +d+      ++LSgG++qrva+ara++++p+++l+DEpt
  KIR65259.1 121 RADEALARVGLAHRADHLP----TELSGGERQRVAIARAVVNRPSIVLADEPT 169
                 8************666555....*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0014       1.6       2      45 ..      34      74 ..      33     111 .. 0.68
   2 !   14.1   0.0   2.5e-05      0.03     234     300 ..     139     202 ..     110     204 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirki 45
                 +++Gp gsGKS+ L ++  l   dr   g+ ++++ +++   +
  KIR65259.1 34 IAVVGPSGSGKSTMLHLMGTL---DRATAGTVSVNGHRVDRLTD 74
                589**********98877776...55555555555555555555 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.5e-05
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpl 300
                 ++elS G ++  a++ a+  ++   s++l DEp  +L+ ++ +++l+ll+el+++g+ +++ TH+  
  KIR65259.1 139 PTELSGGERQRVAIARAVVNRP---SIVLADEPTGNLDSRVGAEVLGLLRELNAEGTTIVVITHDLG 202
                 4678888888878888888888...***************************************975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   1.0   1.5e-07   0.00018      10      70 ..      19      78 ..      17     201 .. 0.49

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.5e-07
      AAA_16 10 eqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggif..lrgkcdqlesaipys 70
                ++L++a  rv++g  e++ ++G+sG+GKs+++      l ++ + +  ++g+ ++  +++++s
  KIR65259.1 19 HALRAANLRVHAG--EMIAVVGPSGSGKSTMLHLMG-TLDRATAGTvsVNGHRVDRLTDRRLS 78
                5676666688888..89***************6666.67777433314555555553332222 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.8e-06    0.0033      25     198 ..      32     200 ..      20     214 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.8e-06
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TT..TTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersa..kklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkk 121
                 ++ a+vGp GSGKs +l  +  +L  ++a   ++  +++++l  +  + +++    +  +f+    +   ++ e  ++ +++r+   + +  + +   +
  KIR65259.1  32 EMIAVVGPSGSGKSTMLHLM-GTLDRATAgtVSVNGHRVDRLTDR--RLSALRASWIGFVFQSFHLTDGLSARENLVTAQLYRGVPARLRRARADEALA 127
                 5789**********999877.666655441146677888888887..4555555556666666555555688999999999999987666666666666 PP

                 HHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
       SMC_N 122 evsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislr 198
                  v  l ++a+  +++LSgGe++ va+a       v++ +++l De   +LD +  ++v  ll+e + + + ++vi+++
  KIR65259.1 128 RVG-LAHRADHLPTELSGGERQRVAIAR----AVVNRPSIVLADEPTGNLDSRVGAEVLGLLRELNAEgTTIVVITHD 200
                 654.56667777889*******998864....468889999**********************998875777788886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   6.4e-07   0.00076      16      39 ..      25      48 ..      18      59 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 6.4e-07
      AAA_29 16 tieidlkgatlltGpsGsGKSTll 39
                 ++++  +++ ++GpsGsGKST+l
  KIR65259.1 25 NLRVHAGEMIAVVGPSGSGKSTML 48
                5677755699************98 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.9e-06    0.0094      98     133 ..      30      65 ..      12      88 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.9e-06
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S----- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktgevsek 133
                  +++++++vG+SG GKSt++  +   +++  g vs +
   KIR65259.1  30 AGEMIAVVGPSGSGKSTMLHLMGTLDRATAGTVSVN 65 
                  56899**************87766666666667655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   8.9e-06     0.011       5      29 ..      31      55 ..      27     204 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.9e-06
      AAA_22  5 agilvvtGesGtGKTtllrrlleql 29
                  +++v+G+sG+GK+t l  +   +
  KIR65259.1 31 GEMIAVVGPSGSGKSTMLHLMGTLD 55
                5699************998877665 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   1.6e-05     0.019       4      72 ..      32     100 ..      29     116 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.6e-05
  Ploopntkinase3   4 rliylvGqPGaGkstlmaeltkgfdrskveqee.etvphdvlvdrttGevvgaelGkrreafsGtdalas 72 
                      +i +vG  G+Gkst++ +l  ++dr +  + + +    d l+dr   +  ++ +G   ++f  td l++
      KIR65259.1  32 EMIAVVGPSGSGKSTML-HLMGTLDRATAGTVSvNGHRVDRLTDRRLSALRASWIGFVFQSFHLTDGLSA 100
                     5999***********76.89999***99987775666778999*9999999999**99999999999976 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.9e-05     0.059       4      53 ..      33      88 ..      30     106 .. 0.73
   2 ?   -0.1   0.0      0.56   6.7e+02     106     130 ..     175     199 ..     170     201 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.9e-05
      AAA_24  4 kiliyGpsgiGKTtlakelgpkplfidtek.Glksldadkfpdie.........swedfl 53
                +i+++Gpsg+GK+t++  +      +d    G+ s++++++++++         sw+ f+
  KIR65259.1 33 MIAVVGPSGSGKSTMLHLM----GTLDRATaGTVSVNGHRVDRLTdrrlsalraSWIGFV 88
                79*************9999....3344443466666666666666666666667777665 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.56
      AAA_24 106 elaeefrrllkklqelrknvifiah 130
                 ++++e+  ll+ l++ + ++++i h
  KIR65259.1 175 RVGAEVLGLLRELNAEGTTIVVITH 199
                 6889999***************998 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.6   0.00013      0.16       1     107 [.      33     199 ..      33     223 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
      AAA_33   1 lvllvGlpGsGKstlaerl..lkklgavllssdt.........................................................lrrrlfgt 40 
                 ++ +vG++GsGKst ++ +  l + +a ++s +                                                          +       
  KIR65259.1  33 MIAVVGPSGSGKSTMLHLMgtLDRATAGTVSVNGhrvdrltdrrlsalraswigfvfqsfhltdglsarenlvtaqlyrgvparlrraradE------- 124
                 5789***********98654444444555555554466666777777777766666666666666666666555555555554422222221....... PP

      AAA_33  41 dqqskt............dytrvldrlyqilnelarkalsagrnvildat..nlsrrerarflklarrlgvpvrivvvetd 107
                                    +t+++   +q++ ++ar +  +   v++d +  nl+ r  a++l l+r+l+++ + +vv t 
  KIR65259.1 125 -----AlarvglahradhLPTELSGGERQRV-AIARAVVNRPSIVLADEPtgNLDSRVGAEVLGLLRELNAEGTTIVVITH 199
                 .....02222222222223445555555555.5665555555556666554456666666777777777666666655555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   3.3e-05      0.04      18      49 ..      31      62 ..      21      79 .. 0.80
   2 ?   -1.1   0.0       1.1   1.3e+03      81     114 ..     146     186 ..     107     199 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.3e-05
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrv 49
                  + +++Gp G+GK+t+l  +  + +a  g+v
  KIR65259.1 31 GEMIAVVGPSGSGKSTMLHLMGTLDRATAGTV 62
                34899*************99999888886665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.1
      AAA_30  81 k......grarlepgtllivDE.agmvdtkqlaallkaaek 114
                 +      +ra +++ ++++ DE +g +d++  a++l  +++
  KIR65259.1 146 ErqrvaiARAVVNRPSIVLADEpTGNLDSRVGAEVLGLLRE 186
                 14444444444555566666664566666666655544444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.2   0.00032      0.38      31      51 ..      29      49 ..      24     199 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00032
      AAA_25 31 pagelallaGapgtGKttlal 51
                 age ++++G++g+GK+t++ 
  KIR65259.1 29 HAGEMIAVVGPSGSGKSTMLH 49
                689***************975 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00014      0.17      34      59 ..      25      51 ..      15      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
                  EGGGS-..SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE 34 dlkkma.shllvaGatgsGKStalntL 59
                  +l+++a   + v+G +gsGKSt+l+ +
    KIR65259.1 25 NLRVHAgEMIAVVGPSGSGKSTMLHLM 51
                  66777745578*************965 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00018      0.22      44      86 ..      28      72 ..       6      83 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
   IstB_IS21 44 iekkenivllGpsGvGKshlaialgv..eavraglsvlfvrvedL 86
                +++ e i+++GpsG GKs +   +g+  +a +  +sv   rv++L
  KIR65259.1 28 VHAGEMIAVVGPSGSGKSTMLHLMGTldRATAGTVSVNGHRVDRL 72
                788999************888877752234444556666666655 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00017       0.2       1      24 [.      33      55 ..      33      83 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
         PRK  1 vIgvagsSGaGkttvarklekifg 24
                +I+v g+SG+Gk+t+ + +  +  
  KIR65259.1 33 MIAVVGPSGSGKSTMLHLMGTL-D 55
                59************99877544.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1662.89
//
Query:       KIR65260.1  [L=403]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-14   53.1   1.9    1.2e-13   51.9   1.9    1.7  1  MacB_PCD  MacB-like periplasmic core domain
      4e-11   43.2   0.4      4e-11   43.2   0.4    3.1  3  FtsX      FtsX-like permease family


Domain annotation for each model (and alignments):
>> MacB_PCD  MacB-like periplasmic core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   1.9   1.3e-17   1.2e-13       1     190 [.      31     244 ..      31     249 .. 0.73

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 1.3e-17
    MacB_PCD   1 slltvLGiaiGvaaviaivslgeglqasvlsqisdl.gnlvtvtpgk....gsgeslsdpdvealrrevpveavapvv....tvrgggsg...eeevtv 87 
                 ++l+ LGiaiG+aa+ia++++ ++ qa+v+  +++l  nl+tvtpg+    g++++l+++ v+ ++r  pv++++++         ++++   e e++ 
  KIR65260.1  31 TVLAALGIAIGIAALIAVLGIPASNQAAVRAGLAALgPNLLTVTPGQnlvtGERAQLPAESVPMIQRIEPVQSASAIGytaaR--VRRTNlvpEGETNG 127
                 89********************************9955799*****9888888888888878755544569988887555331..33333445322333 PP

    MacB_PCD  88 vgvdp...dyfkvfglklaeGrffteadlrggpnvvvigeelaerlf...pvGdtirl.....kpftVvGvledppgsgsalg...ddavylplttlqr 172
                  +v++   d++ v+  ++ +G f+  + ++++ ++vv+g+++ e l      G+         + +  vGvl+  p          d++v++ + ++qr
  KIR65260.1 128 LAVAAarlDLPAVLRSTMRAGVFL--DRVTEQYPAVVLGARASELLGiepHPGEPAPPvwindRWYVTVGVLDRLPL-----ApeiDNSVLVGWPAAQR 219
                 334443457888888878889777..557789999********9988*9857887755677777799*****66432.....1234899***7666643 PP

    MacB_PCD 173 rs........itvrlkdgadleaaaa 190
                           i+vr++d   +++++a
  KIR65260.1 220 YLgfdgrpqaIFVRVDDE-AVDDVRA 244
                 3356667777******95.4577776 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.5     0.067     6e+02      32      84 ..      37      49 ..      21      74 .. 0.59
   2 ?   -2.1   0.7      0.63   5.7e+03      28      43 ..     284     296 ..     273     305 .. 0.58
   3 !   43.2   0.4   4.4e-15     4e-11       1      95 [.     308     395 ..     308     396 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.067
        FtsX 32 alviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallag 84
                +++iG                                        +  +++++
  KIR65260.1 37 GIAIG----------------------------------------IAALIAVL 49
                22222........................................22222222 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.63
        FtsX  28 itlvalviGlglglla 43 
                 +++val++G   g+ +
  KIR65260.1 284 LGAVALLVG---GIGV 296
                 445566666...3333 PP

  == domain 3  score: 43.2 bits;  conditional E-value: 4.4e-15
        FtsX   1 kreigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiskilkke 95 
                 +reig++ralG+++++v+ ++l e++l+t ++ ++G++lg++++      +  +    + +  +++ ++l ++++++ + +lag++++ ++++  
  KIR65260.1 308 RREIGLRRALGASRGHVASQFLAESVLLTGIGGALGILLGAAVTAG----YAVV---ERWPAVLPPTALLGGLAVAVGTGVLAGVYPAVRAARLA 395
                 79**********************************9999888776....3223...899******************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2986.84
//
Query:       KIR65261.1  [L=148]
Description: hypothetical protein TK50_07285 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1004.12
//
Query:       KIR65262.1  [L=194]
Description: hypothetical protein TK50_07290 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-12   46.1   0.0    6.3e-12   45.4   0.0    1.3  1  MerR_1    MerR HTH family regulatory protein
    4.8e-06   26.2   0.2    1.2e-05   25.0   0.2    1.8  1  MerR      MerR family regulatory protein


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0     7e-16   6.3e-12       1      66 [.       1      66 [.       1      68 [. 0.93

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 7e-16
                EEHHHHHHHHTS-HHHHHHHHHHTT-S-EE-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XX CS
      MerR_1  1 ysigevakilgvtthtlrywekegllkpkrteggrryYtdedierLklikyLlkrGltlkgikkll 66
                ++i+++a ++ +t++t+r + ++gll+p+ + g   yY+  +++r++++  L+ rGl+l+ i  ll
  KIR65262.1  1 MTIDQLAAEVWLTPRTIRSYHTRGLLQPPNRIGRTPYYDLPHLNRMRTVALLQGRGLSLETICALL 66
                8*****************************55555**************************97776 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.2   1.3e-09   1.2e-05       1      30 [.       2      31 ..       2      38 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.3e-09
                EHHHHHHHHTTTHHHHHHHHHTTSSTSEEE CS
        MerR  1 tIgevAeltGvsprtLRyYEreGLipppeR 30
                tI ++A  + ++prt+R Y+ +GL+ pp R
  KIR65262.1  2 TIDQLAAEVWLTPRTIRSYHTRGLLQPPNR 31
                8999*********************88877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1409.67
//
Query:       KIR65263.1  [L=343]
Description: 1,4-beta-xylanase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-75  252.4  14.9    1.9e-75  252.4  14.9    2.0  2  Glyco_hydro_11  Glycosyl hydrolases family 11
    0.00097   19.5   0.2        2.1    8.6   0.0    2.5  2  RskA            Anti-sigma-K factor rskA


Domain annotation for each model (and alignments):
>> Glyco_hydro_11  Glycosyl hydrolases family 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.4  14.9   2.1e-79   1.9e-75       1     178 []      54     233 ..      54     233 .. 0.97
   2 ?    1.0   0.4     0.032   2.9e+02      26      58 ..     273     307 ..     260     325 .. 0.77

  Alignments for each domain:
  == domain 1  score: 252.4 bits;  conditional E-value: 2.1e-79
                     ----EEEEEECCCSEEEEEC-TTTEEEEEE.ECSSEEEEEEEESS-TT-EEEEEEEEEE.CCEEEEEEEEEECTTTEEEEEEEEESSS-HHHHSE CS
  Glyco_hydro_11   1 nngyyyslwkdgggsvtytngaggsysvsw.snagnfvvgkGwnpgskrtikYsgtysp.sgnsylavYGWtrnplvEYYivenwgsynpssgat 93 
                     +ngyy+s+wkd+ g++++t  a+g+ys sw ++++n+v+gkGw +g++rt++Ysg+y+p ++n+yla+YGWtrnpl+EYY+ven+gsynpssgat
      KIR65263.1  54 HNGYYFSFWKDS-GNASMTLRADGRYSSSWdRSTNNWVGGKGWATGTRRTVSYSGNYNPgNNNTYLALYGWTRNPLIEYYVVENFGSYNPSSGAT 147
                     689*********.*****************8789************************8466********************************* PP

                     EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEESS--SCEEEEHHHHHHHHHHCT---S.EECEEEEEEEEEEEEEEEEEE CS
  Glyco_hydro_11  94 kkgtvtsdgatYdiykstrvnqpsieGtatfqqywSvrqskrtsgtitvanhfkaWaslGlklg.klnyqvlavEgyqssGsasit 178
                     + gtvt+dg+tYdi++s rvn+psi+G++tf+qywSvrq+kr+sgtitvanhf+aWa++Gl+lg +++yq++a+EgyqssGs+++t
      KIR65263.1 148 RLGTVTTDGGTYDILRSLRVNAPSIDGNQTFYQYWSVRQNKRSSGTITVANHFDAWARAGLNLGtNHSYQIMATEGYQSSGSSDVT 233
                     ****************************************************************7789**************9986 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.032
                     EEEEE..ECSSEEEEEEEESS-TT-EEEEEEEEEE CS
  Glyco_hydro_11  26 ysvsw..snagnfvvgkGwnpgskrtikYsgtysp 58 
                     ++++   s ++n+vv  G   g++ + ++++++s 
      KIR65263.1 273 FNLNVavSGTNNWVVTLGLGGGQSIQNSWNASVSG 307
                     5544444889**********999999999998773 PP

>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00024       2.1      35     100 ..       7      66 ..       2      90 .. 0.54
   2 !    8.5   0.1   0.00026       2.3     115     175 ..     175     246 ..     141     253 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00024
                 ...........XXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX CS
        RskA  35 apaararr...laaaaAaalllvlgqlavasaaldplrqsaaqaeavvavlaapdaagatatvvdsasg 100
                 +p++++ r   l++aa aa+l+v g        ++  ++ a++++++++ l+ +   +++   ++++sg
  KIR65263.1   7 RPRRGS-RlrlLLGAACAAALAVTG------TFIASPNAYAEADRTLTSNLTGT--HNGYYFSFWKDSG 66 
                 222222.246688888888888888......33333333333344444444433..4444444444444 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00026
                 XXXXXXXXXXXXX..XXXXXXX..............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XX CS
        RskA 115 agkvyqlWlipaggkpvslGvl..............eaggsatltlpagpdlgaaaavaVTlEpaGGsqPtpsgp 175
                  + +yq W + + +  +s G++              + g++++ +++a+++ +++   +VT+ + GGs+Pt +gp
  KIR65263.1 175 NQTFYQYWSV-R-QNKRSSGTItvanhfdawaraglNLGTNHSYQIMATEGYQSSGSSDVTVWEGGGSNPT-TGP 246
                 4789******.3.3457777777777777777777779999999******************999***999.776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2585.58
//
Query:       KIR65264.1  [L=153]
Description: S-adenosylmethionine decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-14   54.1   0.0    1.9e-14   53.8   0.0    1.1  1  AdoMet_dc  S-adenosylmethionine decarboxylase


Domain annotation for each model (and alignments):
>> AdoMet_dc  S-adenosylmethionine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   1.1e-18   1.9e-14      10      90 ..      27     112 ..      19     128 .. 0.83

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 1.1e-18
                 -HHHCTSHHHHHHHHHHHHHHCT-EEEEEEEEE-.....SSS-EEEEEEETTEEEEEEEEGGGTEEEEEEEEESTHHHHHHHHHHH CS
   AdoMet_dc  10 dpelledaelleqilteaaeaigatvlsvafhkf.....epeGvsvvvliaeShlsiHtwpetgyaaiDvftcgeispekaleyli 90 
                 d + l+d e+l++++++++ +ig+tv+   +        ++ G s+vv++aeSh +iHt+p  + + +++f+c+ ++   +l+ l+
  KIR65264.1  27 DTRALDDGEALHTFMRDLVARIGMTVIAGPLVASedgppHQAGKSAVVILAESHAAIHTYPGLREVFVNIFSCKPFREADVLDELA 112
                 7789*********************88766666546654446*********************************99988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1167.77
//
Query:       KIR65265.1  [L=399]
Description: hypothetical protein TK50_07305 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-05   23.8   0.0    0.00029   20.9   0.0    2.0  2  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
  ------ inclusion threshold ------
      0.026   13.8   0.0      0.042   13.1   0.0    1.2  1  Glyco_trans_1_3  Glycosyl transferase family 1
       0.25   10.1   0.0       0.34    9.6   0.0    1.1  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas


Domain annotation for each model (and alignments):
>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.086   5.1e+02      90     143 ..      48     101 ..      46     108 .. 0.83
   2 !   20.9   0.0   4.8e-08   0.00029      31     141 ..     256     359 ..     245     384 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.086
                      HTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCC CS
  Glyco_tran_28_C  90 algkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaa 143
                      +lg+p++ +p pe a       a  l + +    + + +l ++ L+++l+e +a
       KIR65265.1  48 RLGVPAVPIPGPETAPYPDAATALRLDDLLSRSAYADPDLVETVLAAQLREFRA 101
                      689*********999888888888899999999999999988888888888765 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 4.8e-08
                      HHCHHHCCT-EEC---STT-TTTTCEEEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSS CS
  Glyco_tran_28_C  31 elqvlhqtGkreleevkikveeltlkvevfefidkmaeaikaadLvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaalvl 124
                      ++ vl+++G+   + +++ v+  + +v++ +  + +  ++ +a   ++++G gt+a ++++g+pl+++p  +    + ++ a  l+++g a + 
       KIR65265.1 256 DVDVLIASGS--TDTAPPRVSPQG-NVQAWPLLP-LRNLLGRARALLCHGGRGTLASAVHAGVPLLVFPGGD---PEREYFADMLARQGLAANC 342
                      5667777773..334444444443.577788888.888999999*************************999...689**************** PP

                      EEEE-STTCHHHHHHHH CS
  Glyco_tran_28_C 125 eqkeltpekLeeallel 141
                       +++  pe+L e +++ 
       KIR65265.1 343 GDDDWRPERLRELVDRA 359
                      ***********999875 PP

>> Glyco_trans_1_3  Glycosyl transferase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     7e-06     0.042     251     319 ..     291     358 ..     287     359 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7e-06
  Glyco_trans_1_3 251 LataraviagagftLmtealyLkkPlLavPvarqFeqvlnalyLerlgyGaavdakdldkedvkdFler 319
                      L +ara+++ +g   ++ a++ + PlL+ P  +  e    a  L r+g+ a++ ++d ++e++++ + r
       KIR65265.1 291 LGRARALLCHGGRGTLASAVHAGVPLLVFPG-GDPEREYFADMLARQGLAANCGDDDWRPERLRELVDR 358
                      679***************************5.66799999**********************9998865 PP

>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   5.7e-05      0.34     316     367 ..     269     320 ..     253     339 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 5.7e-05
       UDPGT 316 kPstLakntllvkW..lPqndlLgHPktkAFvtHaGangvyEaisnGvPmvglP 367
                  P  + +   +  W  lP  +lLg  +++A + H+G  ++  a++ GvP+ + P
  KIR65265.1 269 APPRVSPQGNVQAWplLPLRNLLG--RARALLCHGGRGTLASAVHAGVPLLVFP 320
                 555555555566665599999999..689*********************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3021.75
//
Query:       KIR65266.1  [L=317]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-54  184.1   0.0    3.7e-54  183.9   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.9   0.0   2.1e-58   3.7e-54       2     291 ..      17     315 ..      16     317 .] 0.94

  Alignments for each domain:
  == domain 1  score: 183.9 bits;  conditional E-value: 2.1e-58
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-.......TTTHHHHHHHHHHHH-TTTGGG-EEEEEE..--SSSTTSSSS-HHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevY.......gkgqseellGealkksrkkreeviiatKv..dlrdaeiksglskenires 89 
                   l+lG++++g+  e+++e+++++l+r++eaG +++DtA+ Y         g+se++lG++l++ r+ r+ +++a+Kv  + + +   +gl +e ir++
    KIR65266.1  17 LCLGAMAFGT--EVDEETSFAILDRFVEAGGTTIDTANCYsfwvpngVGGESETVLGRWLSR-RGGRDGLVLASKVgsGPGAHGGAEGLAPEVIRTQ 110
                   9********8..8*********************************9899************.*************8877888899*********** PP

                   HHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT............-HH CS
  Aldo_ket_red  90 leeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynll............rel 170
                   l  sl+rLg+d++Dl++ Hr d+++p  e +l++++e v eGk+r +G Sn+++++l +     ++k+ ++ +avq +y+ l              +
    KIR65266.1 111 LAGSLQRLGVDHLDLYYSHREDRDTP-DEQTLATFHEAVTEGKVRTLGASNHAAWRLAETralaEAKGWTPYTAVQQRYSYLlprpatalpeggHVH 206
                   **************************.**************************999999999*****************************999899 PP

                   HHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSH CS
  Aldo_ket_red 171 eeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasni 267
                   ++ +ll+l++   + + ays+l  G++t+  ++ ++ + ++           +++  ++++l+e+a e gv++ q++l++++  ++ +++i+g+s++
    KIR65266.1 207 ASDELLDLVRSRELTMFAYSTLLWGSYTRSDKPLPE-HYQH-----------PGTERRLQALREVADELGVTVNQVVLSWLIGGEPAIVPIVGVSSV 291
                   999*************************66665444.4444...........45669**************************************** PP

                   HHHHHHHGGGG----HHHHHHHHH CS
  Aldo_ket_red 268 eqlednldalelklseeevaelde 291
                   +ql++ l+a++l+l++e  ++lde
    KIR65266.1 292 AQLDEALAAVDLDLPTELRKRLDE 315
                   *****************9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2366.68
//
Query:       KIR65267.1  [L=352]
Description: glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-29  103.5   0.1    2.2e-29  102.4   0.1    1.6  1  Glycos_transf_2  Glycosyl transferase family 2
    1.9e-18   67.2   0.2      4e-18   66.1   0.2    1.6  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
      2e-07   30.8   0.0    1.8e-06   27.6   0.0    1.9  2  Glyco_tranf_2_2  Glycosyltransferase like family 2
    4.7e-07   29.9   3.7    1.6e-06   28.2   3.7    2.0  1  Glyco_trans_2_3  Glycosyl transferase family group 2
     0.0002   20.9   0.0    0.00037   20.0   0.0    1.4  1  Glyco_transf_21  Glycosyl transferase family 21
     0.0044   17.4   0.2     0.0069   16.8   0.2    1.4  1  NTP_transf_3     MobA-like NTP transferase domain
  ------ inclusion threshold ------
      0.098   11.3   0.0       0.14   10.8   0.0    1.1  1  Chitin_synth_2   Chitin synthase


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   0.1   8.6e-33   2.2e-29       1     120 [.      11     124 ..      11     170 .. 0.90

  Alignments for each domain:
  == domain 1  score: 102.4 bits;  conditional E-value: 8.6e-33
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      sv+ip yN  + + ++++++l q +y+ +e+ivvDD StD++ + +++      +v+v++ ++n G a a+n+g++aa+g++++f+D+D++  p
       KIR65267.1  11 SVIIPNYNYGNSIGKCIDAALGQ-TYQPIEVIVVDDHSTDDSLAKARQR-----PVTVLQTPRNSGVAVARNTGAAAARGEILFFVDSDVALRP 98 
                      8**********************.*************************.....9*************************************** PP

                      THHHHHHHHHHH.TTCEEEEEEEEEE CS
  Glycos_transf_2  95 dwleklvealekdgadvvlgqrprif 120
                      d ++  v++l ++++ +++++++  +
       KIR65267.1  99 DAVQLAVAELAAHPEYGAVCGIYEED 124
                      ****************9999998765 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.2   1.6e-21     4e-18       4     197 ..      10     191 ..       7     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 1.6e-21
  Glyco_tranf_2_3   4 lavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDdD 97 
                      ++v++p++n    +g++++++l q+y ++ev+vv+d s+++ l+ a++      +  v+v++++rn g+     a n +  a++++++ +vD+D
       KIR65267.1  10 VSVIIPNYNYGNSIGKCIDAALGQTYQPIEVIVVDDHSTDDSLAKARQ------R-PVTVLQTPRNSGVA---VARNTGAAAARGEILFFVDSD 93 
                      89******************************************9999......4.899******87754...4467***************** PP

  Glyco_tranf_2_3  98 tvvePdtlkrllqff.ltpkvgavgtpvflln..rstlvsalgalefaerhlrflaarralgvltlnGsgslirrevlkelegldplflltdDy 188
                      + + Pd+++ +++ + ++p++gav +  + +   r+++v      e    ++++ +++  + v +l  s+++i+r+v++e + + p+   t+ +
       KIR65267.1  94 VALRPDAVQLAVAELaAHPEYGAVCGIYEEDPliRDSVVE-----ECRVLQAYCWRMASLGEVSFLFSSLTAIPRRVFEEVGPFNPRLRQTEEV 182
                      ************9999*********999887556999988.....44445556666677777888889**************999999999999 PP

  Glyco_tranf_2_3 189 elglrlrra 197
                      ++g r+ ++
       KIR65267.1 183 DYGERMSAR 191
                      999887764 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   7.2e-10   1.8e-06       1     100 [.      11     102 ..      11     113 .. 0.72
   2 ?    1.1   0.0      0.09   2.3e+02     164     204 ..     155     193 ..     127     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 7.2e-10
  Glyco_tranf_2_2   1 svviplraseerhyieerv...lqkakyydeeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaD 91 
                      sv+ip ++  +   i   +   l ++ +    ie+ivvdd S+++    + +  +    v + ++  +  + a arN Ga  a +++++F+D+D
       KIR65267.1  11 SVIIPNYNYGNS--IGKCIdaaLGQTYQ---PIEVIVVDDHSTDD---SLAKARQRP--VTVLQT-PRNSGVAVARNTGAAAARGEILFFVDSD 93 
                      678888777666..66666433555555...8*************...333333333..332333.34669*********************** PP

  Glyco_tranf_2_2  92 cfissDkfe 100
                          +D ++
       KIR65267.1  94 VALRPDAVQ 102
                      999999765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.09
  Glyco_tranf_2_2 164 ssssilinrraflevGGyDErfrGhgaEDfdlllRlakaik 204
                       ss   i rr f evG ++ r+    +E+ d   R+ ++ +
       KIR65267.1 155 FSSLTAIPRRVFEEVGPFNPRL--RQTEEVDYGERMSARHQ 193
                      4788899***************..66777777777776655 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   3.7   6.1e-10   1.6e-06       3     181 ..      88     278 ..      86     313 .. 0.64

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 6.1e-10
  Glyco_trans_2_3   3 lllDaDtvlppdclreiaaela.spevaivqgpvlvm..nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevggwdgd 93 
                       ++D+D  l pd + +++aela +pe+++v+g++  +   + +++ee+ +l        + ++ ++lg+v +++ s ++++r++++evg+++ +
       KIR65267.1  88 FFVDSDVALRPDAVQLAVAELAaHPEYGAVCGIYEEDplIRDSVVEECRVLQA-----YCWRM-ASLGEVSFLFSSLTAIPRRVFEEVGPFNPR 175
                      689*******************88*******9965433378999999999765.....24444.599*************************44 PP

  Glyco_trans_2_3  94 essvsEDfdmglrlqrkGyrvrfvpes.lvkeksplt.........lraalr.........QrkRwayGcel.eklillvrllgylgsl.lwsa 166
                          +E  d g r+ ++  + ++v+++   +    ++              r         +r+R a G e+  + + +v  lg l+sl l++ 
       KIR65267.1 176 -LRQTEEVDYGERMSAR--HQIMVTDRvRGWHDDDDElwpllhklyR----RarlrvplfaRRRRFAKGFESpARSFGTVAALGVLASLpLAVL 262
                      .5788999999888766..3444444323333333333333222221....0222233333888888887333444445555555555513333 PP

  Glyco_trans_2_3 167 lp.lhlallllfslla 181
                      +p ++l+ + lf+++ 
       KIR65267.1 263 YPaWLLLTATLFGISL 278
                      4423334455666555 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.4e-07   0.00037      24     121 ..      77     174 ..      58     193 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.4e-07
  Glyco_transf_21  24 qaleaakydllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakglaaal.eaaflntlagvlqaklsglgfavGksmalrreaLea 115
                      ++ +aa+ ++l + Dsdv+++pd+++  +a+l+  p+ g V++++   +     + + e+  l+++  ++++ l++++f + +  a+ r+++e+
       KIR65267.1  77 TGAAAARGEILFFVDSDVALRPDAVQLAVAELAAhPEYGAVCGIYEEDP-LIRDSVVeECRVLQAYCWRMAS-LGEVSFLFSSLTAIPRRVFEE 168
                      56788*********************988888877********986444.4444444256666888888888.9******************** PP

  Glyco_transf_21 116 iGGfea 121
                      +G f++
       KIR65267.1 169 VGPFNP 174
                      *99986 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   2.7e-06    0.0069      41     128 ..      39     138 ..      22     237 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.7e-06
                   EEEEECSH..CHHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHHHH.SSSCEEEEETT-TT--HHHHHHHHHCHHHHT.SSEEEEESSSEE....... CS
  NTP_transf_3  41 evvvvggd..eevlaalarlgvrvvededpgkgplaslaaalraaadadavlvlacDmPlltpelverllaaaaasg.advvvptyeger....... 127
                   ev+vv ++  ++ la +++++v+v++ +    g + +  ++++aa + + ++++  D++l +p++v+  +a++aa++ + +v+  ye+++       
    KIR65267.1  39 EVIVVDDHstDDSLAKARQRPVTVLQTP-RNSGVAVARNTGAAAA-RGEILFFVDSDVAL-RPDAVQLAVAELAAHPeYGAVCGIYEEDPlirdsvv 132
                   7778877766566777888899999998.5889999999999988.9***********76.99****999999988835778888877665655555 PP

                   .....E CS
  NTP_transf_3 128 .....g 128
                         
    KIR65267.1 133 eecrvL 138
                   555551 PP

>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.4e-05      0.14     192     258 ..      74     141 ..      70     165 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.4e-05
  Chitin_synth_2 192 kkviGvspdfyeivlmvdadtkvapdsltrlvaalvkdpeilglcGetkian.kkeswvtaiqvfeyy 258
                      + +G  +++ ei++ vd+d  + pd+++  va+l+  pe  ++cG  + +   ++s v   +v + y
      KIR65267.1  74 ARNTGAAAARGEILFFVDSDVALRPDAVQLAVAELAAHPEYGAVCGIYEEDPlIRDSVVEECRVLQAY 141
                     56689999999***********************************6654431456666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2553.58
//
Query:       KIR65268.1  [L=475]
Description: aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-65  221.3   0.0    2.3e-65  220.8   0.0    1.2  1  Aminotran_3    Aminotransferase class-III
     0.0046   16.2   0.0      0.012   14.8   0.0    1.6  2  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.8   0.0   2.6e-69   2.3e-65      13     373 ..      44     395 ..      40     455 .. 0.86

  Alignments for each domain:
  == domain 1  score: 220.8 bits;  conditional E-value: 2.6e-69
                  EEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHHHHH CS
  Aminotran_3  13 itkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKlarky 110
                  ++ aeG ++   dg+r+lD++++  v+n+Gh+hP++++a +  +++  +   + +++  +++l++ l++++p++ld+ fl nsG+eAve+A+Kla ky
   KIR65268.1  44 VDHAEGPWIHTRDGRRILDFTGGVGVLNHGHNHPRILAARQRFQQQRRMEVHKTYFSPYLAALSHNLAAVFPGDLDMSFLPNSGAEAVEGAVKLAYKY 141
                  7889************************************998777777777999999999************************************6 PP

                  HHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHH.CHTCCCEEEEEE-SCETTTTS CS
  Aminotran_3 111 arekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleeleale.kkkkdevaAvivEpiqgegGv 207
                  +      +++ i+  + +fHG++lg+ s+tgs    ++   p +p+vv+++y+d            a++ ++ a + ++ k +v A+++Ep   +  +
   KIR65268.1 142 H----GGKRNTIMRSDISFHGKLLGSGSLTGS--SQNHFTFPGIPGVVSFPYDDLA----------AVQAAVDATRdRRGKCDVYAILIEPFS-ASTM 222
                  5....6779***********************..5566677889*********933..........3445677777799999*********74.5679 PP

                  EB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGC.TS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTS.......B--TTTT-HH CS
  Aminotran_3 208 vvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAleha.gvspDlmtlaKaltgG.lplsavlataevmqalapgs.......hgsTfgGnpl 296
                     s+efl++lrelc+++d++li+DE+ tG G TG++f  + + g+ pD++t++K+ +gG  ++sa +a++ + +  +++         ++T+ G   
   KIR65268.1 223 RWCSEEFLRGLRELCTREDIVLIFDEIYTGWGKTGTMFYFMRYpGLIPDVVTTSKSFGGGkSSISAYVARRPIFHKAYESFndallqsTSTTYYGFGE 320
                  ***************************************99999**************************9887766554456778889********* PP

                  HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-.TTEEEEEEETTEEEEEEBCCCETTCHHHHHHHHHCTEE CS
  Aminotran_3 297 acavalavleiieeekllenaqelgaalkegLeelqkky.evikevRgkGlmiaielkeeaevkekeilkkakekGvl 373
                    a a+++++++ ee++  +a++++++l  gL +++k++ + ++evRg+G++ ++ l +++     ++++k+   G+ 
   KIR65268.1 321 ETATAIEAINVAVEEDFPARARDIERILGPGLARIAKEHpDAVAEVRGAGALWGVFLDAPRV---LDLVTKLAPSGLA 395
                  *************************************999***************5555555...3566666666654 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.18   1.7e+03       8      86 ..      67     137 ..      66     149 .. 0.65
   2 !   14.8   0.0   1.4e-06     0.012     114     224 ..     178     280 ..     168     288 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.18
                    SSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHH CS
  Aminotran_1_2   8 sneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealif 86 
                    ++ + ++ ++p + +++++ ++    ++  + y  +  l++l ++la  +        + + + +  sGa a+  a++ 
     KIR65268.1  67 VGVLNHGHNHPRILAARQRFQQ-QRRMEVHKTYFSPY-LAALSHNLAAVFP------GDLDMSFLPNSGAEAVEGAVKL 137
                    6777777778888888888888.66666666666666.7777777777665......3344445555666665555555 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.4e-06
                    TSE.EEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGST CS
  Aminotran_1_2 114 gge.vvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranve 208
                    g++ vv++p+++ +  +  ++a  +   ++      +  il+e  +  t   +++e l+ l +l+++  ++l++De+Y g   +      t + ++
     KIR65268.1 178 GIPgVVSFPYDDLAAVQAAVDATRDRRGKC-----DVYAILIEPFSASTMRWCSEEFLRGLRELCTREDIVLIFDEIYTGWGKT-----GTMFYFM 263
                    566677777774444444444444433332.....5668889988889999999*************************99998.....4589999 PP

                    TSTT.EEEEEESSSTTS CS
  Aminotran_1_2 209 eepn.llivgslsKafG 224
                    ++p  +  v + sK+fG
     KIR65268.1 264 RYPGlIPDVVTTSKSFG 280
                    99996556899999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3547.21
//
Query:       KIR65269.1  [L=335]
Description: sugar transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-31  107.1   0.1    1.1e-30  106.7   0.1    1.2  1  Glycos_transf_2  Glycosyl transferase family 2
    1.7e-17   64.1   0.6    2.6e-17   63.5   0.6    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    1.8e-08   34.2   0.0    6.8e-07   29.0   0.0    2.1  2  Glyco_tranf_2_2  Glycosyltransferase like family 2
    2.4e-05   23.9   0.1    5.3e-05   22.8   0.1    1.6  1  Glyco_transf_21  Glycosyl transferase family 21
     0.0031   18.0   0.0     0.0078   16.7   0.0    1.7  1  Glyco_tranf_2_4  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.1   3.1e-34   1.1e-30       1     122 [.       9     121 ..       9     164 .. 0.87

  Alignments for each domain:
  == domain 1  score: 106.7 bits;  conditional E-value: 3.1e-34
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      svvip yN ektl ++l+++ aq ++  +e+ivvDDgStD++++i+ ++     ++rv+    n+G ++a+n g+raatgd+++f+D+D++   
       KIR65269.1   9 SVVIPNYNYEKTLGACLDAVFAQ-THRPYEVIVVDDGSTDRSRDIAARY-----PCRVVDGGGNRGVSAARNIGARAATGDILFFVDSDVALRA 96 
                      8**********************.*************************.....9*************************************** PP

                      THHHHHHHHHHH.TTCEEEEEEEEEECC CS
  Glycos_transf_2  95 dwleklvealekdgadvvlgqrprifge 122
                      d +   ++ l +d++   +g++  + + 
       KIR65269.1  97 DAIANALAVLAADPT---CGCVHGTYDT 121
                      ************666...5555444444 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.6   7.2e-21   2.6e-17       3     200 ..       7     193 ..       5     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 7.2e-21
  Glyco_tranf_2_3   3 dlavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDd 96 
                      +++v++p++n e++lg++l+++ aq++ ++ev+vv+d+s++  ++    +aa++p  r  vv   + +g +g s a n + ra+++d++ +vD+
       KIR65269.1   7 RVSVVIPNYNYEKTLGACLDAVFAQTHRPYEVIVVDDGSTDRSRD----IAARYPC-R--VV---DGGGNRGVSAARNIGARAATGDILFFVDS 90 
                      59***************************************9888....5569*98.4..55...447999*********************** PP

  Glyco_tranf_2_3  97 DtvvePdtlkrllqff.ltpkvgavgtpvfll..nrstlvsalgalefaerhlrflaarralgvltlnGsgslirrevlkelegldplflltdD 187
                      D+ +  d+++ +l+++ ++p +g+v +   ++  +++  +  +  l+   +  r++++ r  ++++   ++ ++rr+ + + + +++    ++D
       KIR65269.1  91 DVALRADAIANALAVLaADPTCGCVHGTYDTQplYDDGPIEHYKVLH--AHWWRRRSVGRVNTAIF---ALAAVRRSAFLAAGPFHEELRDAED 179
                      ****************9*********999997335887777444433..23335555555556666...9999********9999997777799 PP

  Glyco_tranf_2_3 188 yelglrlrr.agfr 200
                      +e++ rl r +g+r
       KIR65269.1 180 VEYSERLARvTGIR 193
                      99999999877776 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.9e-10   6.8e-07       1     105 [.       9     105 ..       9     110 .. 0.80
   2 ?    3.0   0.0     0.016        58     169     201 ..     158     188 ..     151     195 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.9e-10
  Glyco_tranf_2_2   1 svviplraseerh.yieervlqkakyydeeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcf 93 
                      svvip ++ e++     + v  +++      e+ivvddgS++     + +    +  +   +      + +aarN Ga  a +d+++F+D+D  
       KIR65269.1   9 SVVIPNYNYEKTLgACLDAVFAQTHR---PYEVIVVDDGSTDR-SRDIAARYPCRVVDGGGNR-----GVSAARNIGARAATGDILFFVDSDVA 93 
                      799*****999931344555555554...89************.6666666666666654555.....99************************ PP

  Glyco_tranf_2_2  94 issDkfekilkl 105
                         D +++ l +
       KIR65269.1  94 LRADAIANALAV 105
                      ****99988875 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.016
  Glyco_tranf_2_2 169 linrraflevGGyDErfrGhgaEDfdlllRlak 201
                       ++r afl  G + E++    aED +   Rla+
       KIR65269.1 158 AVRRSAFLAAGPFHEEL--RDAEDVEYSERLAR 188
                      689**************..899***99999986 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   1.5e-08   5.3e-05      25     143 ..      76     194 ..      64     219 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.5e-08
  Glyco_transf_21  25 aleaakydllvisDsdvrvkpdyLeellaal.edpkvglVtslpvgsdakglaaaleaafl.ntlagvlqa.klsglgfavGksmalrreaLea 115
                      + +aa  d+l + Dsdv++++d++++ la l +dp++g+V++++   d++ l+ +    +    +a ++ + +++++++a+ +  a+rr+a+ a
       KIR65269.1  76 GARAATGDILFFVDSDVALRADAIANALAVLaADPTCGCVHGTY---DTQPLYDDGPIEHYkVLHAHWWRRrSVGRVNTAIFALAAVRRSAFLA 166
                      5678999*****************9866666156*******987...667778877444443678888888889******************** PP

  Glyco_transf_21 116 iGGfealadeLAeDyalgkllraa.Glkv 143
                      +G f +     AeD + +++l++  G+++
       KIR65269.1 167 AGPFHEEL-RDAEDVEYSERLARVtGIRL 194
                      ***99833.33*********999867765 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.2e-06    0.0078       3      81 ..      17      91 ..      15      99 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.2e-06
  Glyco_tranf_2_4  3 eadiLpeflahhlalgf..drilvydndstDgtrailkelpevkllhvdksyederrqvellkallaryaeadwvlvvDaD 81
                      +++L+++l++  a      +++v+d++stD++r+i ++      ++++    + +r+v++ +++ ar+a +d +++vD+D
       KIR65269.1 17 YEKTLGACLDAVFAQTHrpYEVIVVDDGSTDRSRDIAAR------YPCRVVDGGGNRGVSAARNIGARAATGDILFFVDSD 91
                     5666777777654442211369****************9......456655567799***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2370.79
//
Query:       KIR65270.1  [L=75]
Description: hypothetical protein TK50_07350 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   11.9   0.1       0.18   11.7   0.1    1.0  1  SSFA2_C   Sperm-specific antigen 2 C-terminus


Domain annotation for each model (and alignments):
>> SSFA2_C  Sperm-specific antigen 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   9.9e-06      0.18      19      71 ..       8      57 ..       2      64 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.9e-06
     SSFA2_C 19 lsplslpaaprasqsspyralsrsklpaaaP.PpassstemqLrrvLhdirgtv 71
                 +p+++p ap+ +     r ++    p++ P Ppa ss   + r+ Lh +r  +
  KIR65270.1  8 EHPAPIPSAPPRAA--GDRLSAG--PPVTDPaPPARSSLGSRFRQALHRVRRNL 57
                57888888888553..2222222..355666567****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 491.51
//
Query:       KIR65271.1  [L=354]
Description: hypothetical protein TK50_07365 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-12   46.3   7.8    4.6e-12   46.3   7.8    3.0  4  HisKA_3      Histidine kinase
    2.8e-06   27.3   0.6    7.7e-06   25.9   0.0    2.1  3  HATPase_c_2  Histidine kinase-like ATPase domain
    2.8e-06   27.8   0.0    3.9e-05   24.1   0.0    2.3  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.36   2.1e+03      34      34 ..      27      27 ..       5      57 .. 0.50
   2 ?   -3.2   0.0       2.2   1.3e+04      17      32 ..      72      87 ..      70      99 .. 0.67
   3 ?   -2.9   0.2       1.7     1e+04       4      13 ..     120     129 ..     119     139 .. 0.68
   4 !   46.3   7.8   7.7e-16   4.6e-12       1      65 [.     155     219 ..     155     222 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.36
                - CS
     HisKA_3 34 d 34
                +
  KIR65271.1 27 Q 27
                2 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.2
                HHHHHHHHHHHHHHTT CS
     HisKA_3 17 Lsaiklqlelakrlle 32
                L+a+ + ++ a+r ++
  KIR65271.1 72 LFAVDIGADRARRGIH 87
                7778888888877664 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.7
                 HHHHHHHHHH CS
     HisKA_3   4 riARELHDsv 13 
                 r++R LH  +
  KIR65271.1 120 RLSRALHEAI 129
                 7888888555 PP

  == domain 4  score: 46.3 bits;  conditional E-value: 7.7e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLrp 65 
                 ER+riARELHD v +++ ++  +l+l ++ +++dpe+a+++++ + e ++ea++ vR l+++Lr 
  KIR65271.1 155 ERTRIARELHDRVLHEMGLTLHRLDLHRHYADRDPEQARAKIDSAIESLDEAVRTVRGLSAELRR 219
                 9**************************************************************96 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.5   8.7e+03       5      24 ..       7      26 ..       5      33 .. 0.59
   2 ?   -3.5   0.0       1.6   9.3e+03       9      23 ..      43      57 ..      35      66 .. 0.59
   3 !   25.9   0.0   1.3e-09   7.7e-06      23      84 ..     254     311 ..     235     340 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.5
  HATPase_c_2  5 pehvrtvrevaeavlrragl 24
                 +e ++ +re++ea+    + 
   KIR65271.1  7 AELSSMAREIVEAFQHSLRQ 26
                 45556688888888654444 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.6
  HATPase_c_2  9 rtvrevaeavlrrag 23
                 ++v+ v+ +v++r+ 
   KIR65271.1 43 AQVQAVLSDVAARVS 57
                 336666666665544 PP

  == domain 3  score: 25.9 bits;  conditional E-value: 1.3e-09
  HATPase_c_2  23 glseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlp 84 
                   l++++l+e+ l + Ea  Na +ha +     ++ ++++++++a+ ++v D+G gfd+++ +
   KIR65271.1 254 VLPPDVLEELYLILREAARNALRHAAP----SRLDIAVDVGDNAVAATVVDDGCGFDTTDPD 311
                  5899**********************9....6778888899****************97643 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   6.6e-09   3.9e-05       5     110 ..     262     349 ..     259     351 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 6.6e-09
                 HHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEE CS
   HATPase_c   5 rLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGtt 103
                  L+ i++++  Na+++ +  +++++ +++ ++ +  +v D+G+G +  d +       +          +G Gl  + + + l++G+++++s pg+Gt+
  KIR65271.1 262 ELYLILREAARNALRH-AAPSRLDIAVDVGDNAVAATVVDDGCGFDTTDPD-------R---------ARG-GLPSMFERALLLHGQVELISAPGQGTR 342
                 6899************.7788888888876779999***********9988.......3.........567.99999997777899************* PP

                 EEEEEES CS
   HATPase_c 104 ftftlpl 110
                 + +++p+
  KIR65271.1 343 VEVRIPF 349
                 ***9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 2222.70
//
Query:       KIR65272.1  [L=227]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-24   86.4   0.1    2.9e-24   85.4   0.1    1.6  1  Response_reg  Response regulator receiver domain
    7.1e-19   67.1   0.5    1.2e-18   66.4   0.5    1.4  1  GerE          Bacterial regulatory proteins, luxR family
    0.00012   21.7   0.3    0.00031   20.4   0.3    1.7  1  Sigma70_r4_2  Sigma-70, region 4
    0.00035   20.0   1.1     0.0039   16.7   0.1    2.4  2  Sigma70_r4    Sigma-70, region 4
     0.0015   18.3   2.7      0.046   13.5   0.1    2.7  2  HTH_23        Homeodomain-like domain
     0.0086   15.6   0.1      0.017   14.7   0.1    1.5  1  HTH_24        Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.013   16.0   0.1      0.027   14.9   0.1    1.5  1  HTH_40        Helix-turn-helix domain
      0.016   15.3   0.1       0.09   12.9   0.0    2.2  2  HTH_7         Helix-turn-helix domain of resolvase
      0.024   14.4   0.3       0.19   11.5   0.1    2.4  3  HTH_38        Helix-turn-helix domain
      0.054   13.5   0.2       0.26   11.3   0.0    2.2  2  HTH_29        Winged helix-turn helix
       0.17   11.9   2.4       0.33   10.9   0.4    2.2  2  HTH_11        HTH domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.1   1.8e-27   2.9e-24       1     112 []      11     123 ..      11     123 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 1.8e-27
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   v+++dD+ l+r+++r++l  e ++ +v+ea++g eal+l+ + ++d++llD++mpg     ++++ r+  pe++vi+lt+h++ +++++ l+aga+ 
    KIR65272.1  11 VCLADDHTLLRDGIREMLStEPEFAVVGEASSGPEALALVMRLRPDVLLLDVEMPGPGAAAVIRQARRVAPETRVIVLTMHDDPDMVHDLLEAGAVA 107
                   789****************999*************************************************************************** PP

                   EEESSG-HHHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkale 112
                   +l K + +++L++a++
    KIR65272.1 108 YLLKTILRDDLVAAVR 123
                   ************9985 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.5   7.4e-22   1.2e-18       2      57 .]     156     211 ..     155     211 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 7.4e-22
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 +L++RE+evLrl+ae +sn +IA++l+i e TVk h++ni+ KL++ srv+++r a
  KIR65272.1 156 PLTSRELEVLRLTAEAMSNAQIASRLFITEATVKRHLTNIYAKLQAVSRVDAIRKA 211
                 7****************************************************976 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.3   1.9e-07   0.00031      11      54 .]     157     199 ..     157     199 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.9e-07
                   S-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  11 LperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   L+ r+ e++ l   e +s ++IA++l i+e+tVk++l    +kL
    KIR65272.1 157 LTSRELEVLRL-TAEAMSNAQIASRLFITEATVKRHLTNIYAKL 199
                   56677788888.579**********************9887776 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.14   2.2e+02      30      41 ..     135     146 ..     133     148 .. 0.82
   2 !   16.7   0.1   2.4e-06    0.0039       5      49 ..     157     200 ..     156     201 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.14
                 HTS-HHHHHHHH CS
  Sigma70_r4  30 lgiSrerVrqie 41 
                 l +Sre+V ++ 
  KIR65272.1 135 LAVSRETVERLD 146
                 88******8875 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.4e-06
                 S-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Sigma70_r4   5 LpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLR 49 
                 L+ re evl+l  +   + ++I+ rl i++ +V++++++   kL+
  KIR65272.1 157 LTSRELEVLRLTAEAM-SNAQIASRLFITEATVKRHLTNIYAKLQ 200
                 899********98776.*************************997 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1      0.02        32      12      40 ..     120     149 ..     110     159 .. 0.76
   2 !   13.5   0.1   2.8e-05     0.046       7      36 ..     161     190 ..     155     194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.02
      HTH_23  12 lllaeGlsvreIAreLgvsrrTvyrw.lkr 40 
                  +++   ++++ + +L vsr Tv r  +++
  KIR65272.1 120 AAVRSVVRRPTQSVLLAVSRETVERLdRQK 149
                 5566677888888899********975555 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.8e-05
      HTH_23   7 RlrillllaeGlsvreIAreLgvsrrTvyr 36 
                  l++l+l ae +s ++IA +L +++ Tv r
  KIR65272.1 161 ELEVLRLTAEAMSNAQIASRLFITEATVKR 190
                 589*************************98 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1     1e-05     0.017       9      38 ..     162     192 ..     162     194 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1e-05
      HTH_24   9 LelLqknpr.isqreLAerlglSpstvnrrl 38 
                 Le+L+  +  +s++++A rl ++ +tv+r+l
  KIR65272.1 162 LEVLRLTAEaMSNAQIASRLFITEATVKRHL 192
                 56677767779*******************8 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   1.6e-05     0.027       5      55 ..     164     214 ..     161     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.6e-05
      HTH_40   5 tlelleeglsieeIAkerglkesTIegHLaelieegeeidlerlvseeeek 55 
                  l+l  e +s ++IA +  ++e+T+ +HL++++ + + ++  + + + ++ 
  KIR65272.1 164 VLRLTAEAMSNAQIASRLFITEATVKRHLTNIYAKLQAVSRVDAIRKATAA 214
                 57889999************************9997755555555554444 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.8     3e+03      33      38 ..     137     142 ..     135     145 .. 0.82
   2 ?   12.9   0.0   5.5e-05      0.09      12      42 ..     162     192 ..     156     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.8
                 --SSSS CS
       HTH_7  33 isRsTv 38 
                 +sR+Tv
  KIR65272.1 137 VSRETV 142
                 9****9 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 5.5e-05
                 GGGGSSTTTT--STTTSSSS---SSSS--SS CS
       HTH_7  12 nrvvkLleeGisiskIAkevnisRsTvYRyl 42 
                  +v++L +e +s ++IA ++ i+ +Tv+R l
  KIR65272.1 162 LEVLRLTAEAMSNAQIASRLFITEATVKRHL 192
                 69***************************76 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       0.7   1.1e+03       5      22 ..       1      18 [.       1      19 [. 0.80
   2 ?   -2.8   0.0       3.5   5.6e+03      30      39 ..     135     144 ..     134     145 .. 0.74
   3 ?   11.5   0.1   0.00012      0.19      14      41 ..     165     192 ..     159     194 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.7
      HTH_38  5 LsleeReeIerllaeGls 22
                ++ ++R +I   la +++
  KIR65272.1  1 MTDADRSQIRVCLADDHT 18
                6899*****988877665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.5
      HTH_38  30 LgrspsTIsR 39 
                 L +s+ T+ R
  KIR65272.1 135 LAVSRETVER 144
                 5678888887 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00012
      HTH_38  14 erllaeGlslreIArrLgrspsTIsREl 41 
                  rl ae +s+++IA rL     T+ R+l
  KIR65272.1 165 LRLTAEAMSNAQIASRLFITEATVKRHL 192
                 5778999*******************98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.5     4e+03      21      31 ..     134     144 ..     127     155 .. 0.70
   2 ?   11.3   0.0   0.00016      0.26       3      33 ..     163     192 ..     162     194 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.5
      HTH_29  21 llglsrrtvyr 31 
                 ll +sr tv r
  KIR65272.1 134 LLAVSRETVER 144
                 45666666655 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00016
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvyrwl 33 
                 ++l+l ae++s  +qiA +l +++ tv r+l
  KIR65272.1 163 EVLRLTAEAMS-NAQIASRLFITEATVKRHL 192
                 799*******8.***************9986 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.48   7.8e+02      25      34 ..     135     144 ..     133     144 .. 0.87
   2 ?   10.9   0.4    0.0002      0.33       6      43 ..     162     199 ..     158     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.48
      HTH_11  25 LnvSrrtvrr 34 
                 L vSr tv r
  KIR65272.1 135 LAVSRETVER 144
                 89*****965 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0002
      HTH_11   6 lelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelg 43 
                 le L+ + + +s +++A +L ++++tv r++  + +++
  KIR65272.1 162 LEVLRLTAEAMSNAQIASRLFITEATVKRHLTNIYAKL 199
                 7889999999********************99886666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1760.69
//
Query:       KIR65273.1  [L=382]
Description: hypothetical protein TK50_07375 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-26   92.3   0.0    3.4e-12   45.7   0.0    2.3  2  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.1   5.1e-16   9.2e-12       2      77 ..      41     114 ..      40     134 .. 0.92
   2 !   45.7   0.0   1.9e-16   3.4e-12     312     406 ..     278     371 ..     262     378 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 5.1e-16
                  HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEE CS
  AMP-binding   2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvpl 77 
                  +++a ++pd++al    ++ +l+Yr l+e ++ +A  L ++G+++g rVa++ ++  ++v+a+la+l aGa +v +
   KIR65273.1  41 RKAAGEQPDAPALCV--GDLRLSYRRLWESIDDVADRLVAAGAGPGRRVAVVGERAEDLVAAALAVLAAGASCVLC 114
                  678999*******77..99********************99******************************99865 PP

  == domain 2  score: 45.7 bits;  conditional E-value: 1.9e-16
                  EEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE......T.CCEEEEEEEE CS
  AMP-binding 312 legYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafds......e.grwlrTGDlg 402
                  +e++G +Et+++++v+p        g v +plp  +++++D    +pvp ge+Gel++ gp ++ gYl +pe+t  +f +      e  r++rTG  +
   KIR65273.1 278 MELFGFAETSMMAAVVP-G------GEVLTPLPQHRWHVLDAG-FGPVPAGEVGELFLAGPMLAVGYLDRPELTLARFLPdplgapEgSRMFRTGCRA 367
                  689*********98566.3......34668***********96.99*********************************78999975456*****888 PP

                  EEET CS
  AMP-binding 403 rlde 406
                  r+ +
   KIR65273.1 368 RCLP 371
                  8764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2770.16
//
Query:       KIR65274.1  [L=452]
Description: poly(3-hydroxybutyrate) depolymerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-30  106.3   8.1    1.9e-30  105.7   6.7    1.9  2  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
      4e-27   94.8  17.7    3.3e-12   47.0   2.4    4.9  4  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
     0.0012   18.4   0.2     0.0012   18.4   0.2    2.4  3  Esterase_phd     Esterase PHB depolymerase
     0.0076   15.8   0.3      0.015   14.8   0.3    1.4  1  Peptidase_S9     Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.079   12.7   0.1       0.17   11.7   0.1    1.5  1  Abhydrolase_2    Phospholipase/Carboxylesterase
       0.36   10.3   2.8       0.41   10.2   0.8    1.8  2  DLH              Dienelactone hydrolase family
       0.46   10.9   2.5         59    4.1   0.1    3.4  3  ET               ET module


Domain annotation for each model (and alignments):
>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.88   2.3e+03      47      60 ..     149     161 ..     114     165 .. 0.55
   2 !  105.7   6.7   7.6e-34   1.9e-30       4     127 .]     328     449 ..     325     449 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.88
                     EEEETT.TTEEEEE CS
  Ricin_B_lectin  47 eirskaqselCldv 60 
                      ir+  + +lC+d+
      KIR65274.1 149 MIRQ-IEADLCVDT 161
                     3333.234555553 PP

  == domain 2  score: 105.7 bits;  conditional E-value: 7.6e-34
                     EEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEETTSEEEETT.TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTTEEEET CS
  Ricin_B_lectin   4 eirnvasgkCLdvegeska.gapvglydChgskgkQlwtltkdgeirskaqselCldvs..staegakvvlakChkgkgnqrWefdkdgtqirhk 95 
                     ++rn++ g CLdv+g+s+a ga+++++dChg+++ Q wt t+ +e+r+   +++Cldv+  +ta+g++v++++C+ g++nqrW+f+ dgt i   
      KIR65274.1 328 AVRNTTAGRCLDVNGGSQAnGAAAIIWDCHGQSN-QAWTSTAAQELRV--FGGKCLDVNggATANGSSVIIWDCN-GQSNQRWRFNADGT-ITAV 417
                     689*****************************88.*************..59**********************9.**************.**** PP

                     TTSEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  96 ksgkCLdvkgasksne.klilkkcdsgsdsQkW 127
                      sg+CLd+ +++++n+ + ++++c +g++sQkW
      KIR65274.1 418 GSGRCLDLVSGGTANGtRTQIWDC-TGAASQKW 449
                     **********************99.******** PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.7      0.27     7e+02      82      82 ..     133     133 ..      35     207 .. 0.65
   2 !   47.0   2.4   1.3e-15   3.3e-12      11      89 .]     323     396 ..     298     396 .. 0.87
   3 !   31.3   0.4     1e-10   2.6e-07      22      58 ..     376     412 ..     372     413 .. 0.91
   4 !   41.6   1.7   6.1e-14   1.6e-10       2      53 ..     403     450 ..     402     452 .] 0.93

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.27
                      T CS
  RicinB_lectin_2  82 n 82 
                      n
       KIR65274.1 133 N 133
                      1 PP

  == domain 2  score: 47.0 bits;  conditional E-value: 1.3e-15
                      TTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  11 gdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      ++g+  ++n   g++Ldv+ggs+anga++  w+c+g+ nq W+ + ++    +++    gk+Ldv+gg+tanG++v++w
       KIR65274.1 323 PGGTSAVRNTTAGRCLDVNGGSQANGAAAIIWDCHGQSNQAWTSTAAQ----ELRV-FGGKCLDVNGGATANGSSVIIW 396
                      5677889************************************64444....6665.4568*****9999*******99 PP

  == domain 3  score: 31.3 bits;  conditional E-value: 1e-10
                      SSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCE CS
  RicinB_lectin_2  22 sgkvLdvaggstanganvqqwtcsgaanqqWrledtg 58 
                       gk+Ldv+gg+tang  v  w+c+g+ nq+Wr++ +g
       KIR65274.1 376 GGKCLDVNGGATANGSSVIIWDCNGQSNQRWRFNADG 412
                      59******************************96655 PP

  == domain 4  score: 41.6 bits;  conditional E-value: 6.1e-14
                      CGEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEE CS
  RicinB_lectin_2   2 nQqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWr 53 
                      nQ+W++    +   ti++v+sg++Ld  +g+tang+++q w+c+gaa+q+W 
       KIR65274.1 403 NQRWRF----NADGTITAVGSGRCLDLVSGGTANGTRTQIWDCTGAASQKWS 450
                      9*****....4445*************************************6 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   1.7       1.8   4.6e+03      99     110 ..      16      27 ..      10      64 .. 0.51
   2 !   18.4   0.2   4.7e-07    0.0012      80     138 ..     145     203 ..     134     220 .. 0.84
   3 ?   -1.5   0.0      0.58   1.5e+03     173     203 ..     211     241 ..     199     250 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.8
  Esterase_phd  99 vyvaGlsaGaal 110
                   + vaG+sa a  
    KIR65274.1  16 ILVAGVSATALA 27 
                   555555554322 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 4.7e-07
  Esterase_phd  80 vvvalvdalvdehrvdaarvyvaGlsaGaaladllalhypdvfaavalhsGlalGeaad 138
                    v  +++ +  +  vd+++++  G+s G++++  la    +vf ava++sG  l   + 
    KIR65274.1 145 FVDDMIRQIEADLCVDTTQLFALGFSYGGGMSYSLACSRANVFRAVAVYSGGQLSGCSG 203
                   56678899999999************************************988754444 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.58
  Esterase_phd 173 lvvqGdadtvvavknaeslvvalrrlsGlad 203
                   + ++G +d v++v    sl  ++ r +G ++
    KIR65274.1 211 MGIHGIGDPVLNVSAGRSLRDTFVRNNGCTA 241
                   5589999999999999999999999999876 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.3   5.9e-06     0.015      55      95 ..     153     193 ..     132     196 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.9e-06
                   HHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEE CS
  Peptidase_S9  55 lakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavae 95 
                   + +   vd+++l++ G SyGG ++  ++ +r ++F+a++  
    KIR65274.1 153 IEADLCVDTTQLFALGFSYGGGMSYSLACSRANVFRAVAVY 193
                   4444489*****************************99765 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   6.5e-05      0.17      93     182 ..     149     233 ..     140     245 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.5e-05
                    HHHH.HHHTT--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHHHH CS
  Abhydrolase_2  93 lida.elkkgipssriiigGFSqGaalalylaltlpkklggivafsgalplsqklessatavtkklpilqiHgeeDpvvplalgkaakevl 182
                    +i++ e +  ++  + +  GFS G+ ++  la +  +  + +  +sg  ++        ++ t+ ++++ iHg  Dpv++++ g  +   +
     KIR65274.1 149 MIRQiEADLCVDTTQLFALGFSYGGGMSYSLACSRANVFRAVAVYSGGQLSGC------SGGTQPIAYMGIHGIGDPVLNVSAGRSLRDTF 233
                    4544233334999999************8888888888888878888655443......344557889*************9998877655 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1       0.1   2.6e+02     102     167 ..      87     154 ..      85     158 .. 0.78
   2 ?   10.2   0.8   0.00016      0.41      83     131 ..     147     202 ..     134     241 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.1
         DLH 102 vvGfCmGGalalllaaevpevdaavafYG...lspekeleeaakikapilalfgeeDefipadevekle 167
                 + Gf + G  a ++ + + +  aa ++YG   + +++++  a++ ++   a  g++D  +  d + ++e
  KIR65274.1  87 IFGFHWNGGTANDVDSGG-TDGAAWSYYGlrqQANNSTIFVAPQGNGNGWANPGGQDVTFVDDMIRQIE 154
                 678888888888888888.568999****7776777788888888888888888888888777777766 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00016
         DLH  83 kaavaylksvpevstkkvgvvGfCmGGalalllaaev.pevdaavafYG......l 131
                 ++ ++ ++++  v+t ++ + Gf  GG +++ la    + + a++++ G      +
  KIR65274.1 147 DDMIRQIEADLCVDTTQLFALGFSYGGGMSYSLACSRaNVFRAVAVYSGgqlsgcS 202
                 5667788888889999******************9994556666666664444441 PP

>> ET  ET module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.039     1e+02      21      47 ..     334     360 ..     324     372 .. 0.87
   2 ?    4.1   0.1     0.023        59      19      46 ..     374     401 ..     358     406 .. 0.80
   3 ?    1.2   0.1      0.18   4.7e+02      21      44 ..     419     442 ..     408     447 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.039
          ET  21 dGeCasvsltttvngqnvtlytCdpts 47 
                  G+C  v+  ++ ng+ + ++ C  +s
  KIR65274.1 334 AGRCLDVNGGSQANGAAAIIWDCHGQS 360
                 6**********************8765 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.023
          ET  19 aCdGeCasvsltttvngqnvtlytCdpt 46 
                 +  G+C  v+  +t ng++v ++ C  +
  KIR65274.1 374 VFGGKCLDVNGGATANGSSVIIWDCNGQ 401
                 4569*********************876 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.18
          ET  21 dGeCasvsltttvngqnvtlytCd 44 
                 +G+C  +   +t ng+ ++++ C+
  KIR65274.1 419 SGRCLDLVSGGTANGTRTQIWDCT 442
                 799**99999*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3077.65
//
Query:       KIR65275.1  [L=411]
Description: RCC1 repeats protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-53  175.9  67.5    2.2e-09   36.9   0.5    7.3  7  RCC1_2          Regulator of chromosome condensation (RCC1) r
      6e-53  177.3  54.2    7.6e-08   32.9   2.1    8.1  8  RCC1            Regulator of chromosome condensation (RCC1) r
  ------ inclusion threshold ------
          1    9.4   5.1        2.2    8.3   0.2    3.0  3  FGAR-AT_N       Formylglycinamide ribonucleotide amidotransfe


Domain annotation for each model (and alignments):
>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.5   3.6e-13   2.2e-09       1      30 []      63      92 ..      63      92 .. 0.95
   2 !   25.9   4.8     1e-09     6e-06       2      30 .]     114     142 ..     113     142 .. 0.93
   3 !   26.6   3.3   5.9e-10   3.6e-06       1      28 [.     163     190 ..     163     192 .. 0.90
   4 !   36.3   1.9   5.5e-13   3.3e-09       1      30 []     214     243 ..     214     243 .. 0.98
   5 !   30.0   4.2   5.1e-11   3.1e-07       4      30 .]     267     293 ..     264     293 .. 0.93
   6 !   30.1   5.1   4.8e-11   2.9e-07       2      30 .]     314     342 ..     313     342 .. 0.95
   7 !   25.5   2.6   1.4e-09   8.2e-06       9      30 .]     371     392 ..     368     392 .. 0.96

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 3.6e-13
      RCC1_2  1 VksvsaGdyHscaLtedGeVlcWGsNsdGQ 30
                V  v+aG+ H+ca+ +dG+++cWG+N +GQ
  KIR65275.1 63 VSRVAAGNAHTCAIPTDGRLWCWGDNLSGQ 92
                5679*************************9 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 1e-09
      RCC1_2   2 ksvsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 + + aG + +c++++dG+++cWG Ns+GQ
  KIR65275.1 114 ARIDAGTSSTCGVRTDGTLWCWGGNSNGQ 142
                 568899999*******************9 PP

  == domain 3  score: 26.6 bits;  conditional E-value: 5.9e-10
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsd 28 
                 ++svs  ++H+c+++++G+++cWG N +
  KIR65275.1 163 WASVSVAANHTCGVRTNGTLWCWGLNRN 190
                 67899999*****************976 PP

  == domain 4  score: 36.3 bits;  conditional E-value: 5.5e-13
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 ++sv+ G+ H+ca+++d +++cWG+ +dGQ
  KIR65275.1 214 WASVATGYAHTCAVRTDRTLWCWGDSTDGQ 243
                 68***************************9 PP

  == domain 5  score: 30.0 bits;  conditional E-value: 5.1e-11
      RCC1_2   4 vsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 v  G+ H+ca+++dG ++cWG N++GQ
  KIR65275.1 267 VTTGYAHTCAVRTDGSLWCWGENGYGQ 293
                 66899*********************9 PP

  == domain 6  score: 30.1 bits;  conditional E-value: 4.8e-11
      RCC1_2   2 ksvsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 + v aG++ sca+++dG ++cWG+N++GQ
  KIR65275.1 314 ARVDAGVDSSCAVRTDGSLWCWGNNNSGQ 342
                 6789************************9 PP

  == domain 7  score: 25.5 bits;  conditional E-value: 1.4e-09
      RCC1_2   9 yHscaLtedGeVlcWGsNsdGQ 30 
                 yH ca+++dG ++cWG+N +GQ
  KIR65275.1 371 YHGCAIRTDGGLWCWGNNISGQ 392
                 9*****************9999 PP

>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.2    0.0012       7.4      36      50 .]      62      76 ..      45      76 .. 0.81
   2 !   30.7   0.8   5.9e-11   3.5e-07       1      48 [.      79     124 ..      79     126 .. 0.90
   3 !   32.9   2.1   1.3e-11   7.6e-08       1      48 [.     129     174 ..     129     176 .. 0.94
   4 !   28.1   1.2   3.8e-10   2.3e-06       1      50 []     179     227 ..     179     227 .. 0.90
   5 !   30.1   0.8   9.5e-11   5.7e-07       4      50 .]     233     277 ..     231     277 .. 0.95
   6 !   24.8   3.0   4.2e-09   2.5e-05       1      50 []     280     326 ..     280     326 .. 0.90
   7 !   32.3   0.7   1.9e-11   1.2e-07       1      39 [.     329     365 ..     329     376 .. 0.80
   8 !   25.5   0.3   2.5e-09   1.5e-05       1      29 [.     379     407 ..     379     411 .] 0.93

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0012
                -EEEEEEETTEEEEE CS
        RCC1 36 rvvkvacGddhtval 50
                 v+ va+G+ ht+a+
  KIR65275.1 62 SVSRVAAGNAHTCAI 76
                7999*********98 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 5.9e-11
                 TTEEEEEE--GGGTTSSSS---EEEEEE-GGGTTS-EEEEEEETTEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgttesvlvPtkveglsgnrvvkvacGddhtv 48 
                 dGr+++WG n  GqLG gtt ++++P++v   +  ++  + +G + t+
  KIR65275.1  79 DGRLWCWGDNLSGQLGDGTTTNRTTPVQVGAAT--NWARIDAGTSSTC 124
                 9****************************7776..8999999988775 PP

  == domain 3  score: 32.9 bits;  conditional E-value: 1.3e-11
                 TTEEEEEE--GGGTTSSSS---EEEEEE-GGGTTS-EEEEEEETTEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgttesvlvPtkveglsgnrvvkvacGddhtv 48 
                 dG +++WG n++GqLG gt+ +++ P++v   +  ++ +v+  ++ht+
  KIR65275.1 129 DGTLWCWGGNSNGQLGDGTSTRRTAPVQVGDAT--NWASVSVAANHTC 174
                 8****************************6665..***********97 PP

  == domain 4  score: 28.1 bits;  conditional E-value: 3.8e-10
                 TTEEEEEE--GGGTTSSSS-..--EEEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgtt..esvlvPtkveglsgnrvvkvacGddhtval 50 
                 +G +++WG n + qLG+g++  ++  +P +v + +   + +va G+ ht+a+
  KIR65275.1 179 NGTLWCWGLNRNTQLGTGSSpyWTT-TPLQVGTAT--TWASVATGYAHTCAV 227
                 699*****************97444.7****8877..*************96 PP

  == domain 5  score: 30.1 bits;  conditional E-value: 9.5e-11
                 EEEEE--GGGTTSSSS---EEEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   4 VysWGrndyGqLGlgttesvlvPtkveglsgnrvvkvacGddhtval 50 
                 +++WG +++GqLGlg    +++Pt+v + +   +  v+ G+ ht+a+
  KIR65275.1 233 LWCWGDSTDGQLGLGILSYRSTPTQVGTAT--SWAGVTTGYAHTCAV 277
                 89***************9999*****8877..9************96 PP

  == domain 6  score: 24.8 bits;  conditional E-value: 4.2e-09
                 TTEEEEEE--GGGTTSSSS---EEEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgttesvlvPtkveglsgnrvvkvacGddhtval 50 
                 dG++++WG n yGqLG gt  +  +P++v + +   +  v +G d ++a+
  KIR65275.1 280 DGSLWCWGENGYGQLGGGTGFQT-TPVQVGTAT--TWARVDAGVDSSCAV 326
                 8*******************666.6****8876..999999999999986 PP

  == domain 7  score: 32.3 bits;  conditional E-value: 1.9e-11
                 TTEEEEEE--GGGTTSSSS---EEEEEE-GGGTTS-EEE CS
        RCC1   1 dGrVysWGrndyGqLGlgttesvlvPtkveglsgnrvvk 39 
                 dG++++WG+n+ GqLG gtt  +++Pt++ + +   +++
  KIR65275.1 329 DGSLWCWGNNNSGQLGDGTTTHRNTPTRIGTAT--TWTD 365
                 8*******************9999****96654..5555 PP

  == domain 8  score: 25.5 bits;  conditional E-value: 2.5e-09
                 TTEEEEEE--GGGTTSSSS---EEEEEE- CS
        RCC1   1 dGrVysWGrndyGqLGlgttesvlvPtkv 29 
                 dG +++WG+n  GqLG gtt +++ P +v
  KIR65275.1 379 DGGLWCWGNNISGQLGDGTTTNRSAPAQV 407
                 8**********************99*988 PP

>> FGAR-AT_N  Formylglycinamide ribonucleotide amidotransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.33     2e+03      46      65 ..     157     176 ..     153     179 .. 0.87
   2 ?    8.3   0.2   0.00036       2.2      46      65 ..     208     227 ..     190     233 .. 0.88
   3 ?    1.7   0.1     0.042   2.5e+02      46      65 ..     258     277 ..     254     280 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.33
   FGAR-AT_N  46 lGtiSpWsSkAtdIahncgl 65 
                 +G  + W+S ++   h+cg+
  KIR65275.1 157 VGDATNWASVSVAANHTCGV 176
                 577899************97 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00036
   FGAR-AT_N  46 lGtiSpWsSkAtdIahncgl 65 
                 +Gt + W+S At  ah+c +
  KIR65275.1 208 VGTATTWASVATGYAHTCAV 227
                 7*****************87 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.042
   FGAR-AT_N  46 lGtiSpWsSkAtdIahncgl 65 
                 +Gt ++W+   t  ah+c +
  KIR65275.1 258 VGTATSWAGVTTGYAHTCAV 277
                 7*****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2729.49
//
Query:       KIR65276.1  [L=610]
Description: hypothetical protein TK50_07390 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.011   15.8   1.0       0.49   10.8   0.1    3.5  3  Reg_prop  Two component regulator propeller
       0.29   11.7  16.8       0.79   10.3   0.2    5.9  6  PQQ_3     PQQ-like domain


Domain annotation for each model (and alignments):
>> Reg_prop  Two component regulator propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   5.4e-05      0.49       5      23 ..      83     100 ..      79     101 .. 0.84
   2 ?    0.5   0.0      0.12   1.1e+03      11      23 ..     283     294 ..     276     295 .. 0.80
   3 ?   -0.3   0.1      0.22     2e+03      15      23 ..     489     497 ..     479     498 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.4e-05
                 SCEEEEEE-TTSCEEEEES CS
    Reg_prop   5 nnvtaileDsdGrlWvGte 23 
                  +v+++++  ++rlW+Gt 
  KIR65276.1  83 AYVWSLAQ-ANNRLWFGTG 100
                 5899****.899*****95 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.12
                 EE-TTSCEEEEES CS
    Reg_prop  11 leDsdGrlWvGte 23 
                  e +dGr+ v+t+
  KIR65276.1 283 TE-HDGRVFVSTW 294
                 55.8*******98 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.22
                 TSCEEEEES CS
    Reg_prop  15 dGrlWvGte 23 
                  Grl vGt 
  KIR65276.1 489 GGRLFVGTM 497
                 47******7 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.4   1.2e+04      29      39 ..     146     157 ..     143     158 .. 0.71
   2 ?    4.1   1.0    0.0076        68      17      30 ..     222     249 ..     209     254 .. 0.70
   3 ?    2.1   0.0     0.034     3e+02      18      35 ..     283     304 ..     258     307 .. 0.79
   4 ?   -1.2   0.2      0.36   3.2e+03      12      33 ..     353     382 ..     347     383 .. 0.68
   5 ?   10.3   0.2   8.8e-05      0.79      16      30 ..     484     498 ..     457     505 .. 0.77
   6 ?    1.5   0.1     0.051   4.6e+02      13      27 ..     566     580 ..     556     584 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.4
       PQQ_3  29 g.dGtlyAlDae 39 
                 + + ++y +D +
  KIR65276.1 146 HrQPRVYVYDLA 157
                 456799999986 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0076
       PQQ_3  17 p...........avdgglvyvgtg...d 30 
                 +           +v+g+++y+g g   +
  KIR65276.1 222 AnftkygnirhfLVAGDVLYAGVGvgaN 249
                 4444555555559**********95553 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.034
       PQQ_3  18 avdgglvyvgtg....dGtlyA 35 
                 +  +g+v+v+t+     G+l A
  KIR65276.1 283 TEHDGRVFVSTWsaatGGSLAA 304
                 5579*******98887777765 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.36
       PQQ_3  12 pvnsspavdgglvyvgtg........dGtl 33 
                 +v+s++ +  + v +gt+        +G l
  KIR65276.1 353 QVWSAASYEPDPVIAGTYglgalmsyQGYL 382
                 688888888888999998655555555555 PP

  == domain 5  score: 10.3 bits;  conditional E-value: 8.8e-05
       PQQ_3  16 spavdgglvyvgtgd 30 
                 ++av+gg+++vgt+d
  KIR65276.1 484 TMAVAGGRLFVGTMD 498
                 46***********97 PP

  == domain 6  score: 1.5 bits;  conditional E-value: 0.051
       PQQ_3  13 vnsspavdgglvyvg 27 
                 + +++++dg ++y g
  KIR65276.1 566 GFRTMVADGSTLYLG 580
                 445679*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4757.24
//
Query:       KIR65277.1  [L=283]
Description: hypothetical protein TK50_07395 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-52  177.0   1.0    6.8e-52  176.7   1.0    1.0  1  DUF72     Protein of unknown function DUF72


Domain annotation for each model (and alignments):
>> DUF72  Protein of unknown function DUF72
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.7   1.0   3.8e-56   6.8e-52       5     217 ..      24     259 ..      21     260 .. 0.88

  Alignments for each domain:
  == domain 1  score: 176.7 bits;  conditional E-value: 3.8e-56
                 ..CCCHHHHHCCT-SEEEE-HHCCSSS-HHHHHHHHCTS-TT-EEEEE--CCCCCS.G-.SCHHHHHHHHHH.CHHHCT-EEEEEEE--TT--S.HHHH CS
       DUF72   5 lkkkerLeyYarhfntVEinstFYalpspetvakwaaqtpedFrFavKapraitherne.daeealerflesalepLgeklgpllfQlppsfkfdeenl 102
                 l+++erL++Ya  +++VE+n+tFYa+ps++ va+wa+qt +dFrF+vK+p+ +ther+  da+++l +fl++ +epLg ++ +l++Qlp sf   ++++
  KIR65277.1  24 LPAQERLRHYAGWCDAVEGNTTFYATPSRDAVASWARQTGPDFRFVVKLPKLVTHERRLaDADAELGAFLDA-IEPLGPRAHALWVQLPGSF--APADV 119
                 67899**************************************************963347**********7.*******************..8779* PP

                 HHHHHHTTTS-..S.EEEE--BGGGH...HHHHHHHHTT-EEEEE........................--SSC--------SSTEEEEEE--S..HHT CS
       DUF72 103 erLeaflaalp..l.lavEvRhrswf...ellellrehgvavvld........................epkkpklpledvttadfvyvRlhgr..eer 169
                   L++fl++lp  +  avEvRh+++f      +ll+e   a v+d                        + +kp+lpl++++ +d ++vR++gr  +  
  KIR65277.1 120 PALARFLRRLPasHrQAVEVRHPAFFadaHAARLLEETL-A-VTDaewipfdttaffaspptsdaereaWTRKPRLPLRTRALTDRPIVRYLGRddP-- 214
                 ************9559*********99742444444443.2.3333466666*************997766***********************641.. PP

                 TB----HHHHHHHHHHHHHHHTCSSEEEEEE-SBCCCHHHHHHHHHHH CS
       DUF72 170 yayrYseeelaewaerikawaaegrevyvffnndaegqaplnaraLae 217
                    + + + +++w++ ++ w++egr++ vf++++++++ap+ ar++++
  KIR65277.1 215 ---ERTVDGWRHWVDVVAGWLREGRSPTVFVHTPDNADAPALARRFHD 259
                 ...44669999**********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2216.19
//
Query:       KIR65278.1  [L=144]
Description: hypothetical protein TK50_07400 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1141.26
//
Query:       KIR65279.1  [L=1447]
Description: hypothetical protein TK50_07405 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.2e-118  392.7   0.0      8e-47  159.6   0.0    5.4  5  FtsK_SpoIIIE   FtsK/SpoIIIE family
    4.7e-14   52.8   0.0    0.00066   20.0   0.0    4.9  4  AAA_22         AAA domain
    2.8e-11   44.1   6.2      0.026   14.9   0.0    5.2  4  AAA_16         AAA ATPase domain
    2.1e-10   40.7   0.1     0.0039   17.1   0.1    5.3  4  NACHT          NACHT domain
    2.1e-09   37.7   0.0    3.4e-09   37.0   0.0    1.3  1  Peptidase_C14  Caspase domain
    1.9e-07   31.6   0.4      0.054   13.8   0.0    4.4  4  AAA_19         AAA domain
    3.2e-06   26.9   1.2       0.04   13.5   0.0    4.5  4  AAA_25         AAA domain
    1.2e-05   25.4   0.1       0.68   10.0   0.0    4.1  4  MMR_HSR1       50S ribosome-binding GTPase
    1.8e-05   24.5   2.3      0.013   15.3   0.1    4.0  4  AAA_30         AAA domain
    0.00013   21.6   0.2        1.7    8.5   0.3    3.8  3  AAA_29         P-loop containing region of AAA domain
    0.00017   22.1   1.3       0.13   12.8   0.1    3.9  4  ABC_tran       ABC transporter
    0.00032   21.1   0.3        2.2    8.7   0.1    4.0  3  AAA            ATPase family associated with various cellular
     0.0015   18.5   0.0        1.7    8.5   0.0    2.9  3  ATPase_2       ATPase domain predominantly from Archaea
      0.002   18.3   0.5        2.4    8.3   0.0    3.8  3  AAA_33         AAA domain
     0.0048   17.1   0.0        6.5    7.0   0.0    3.7  4  Roc            Ras of Complex, Roc, domain of DAPkinase
      0.009   16.4   0.0         23    5.4   0.0    3.4  3  RNA_helicase   RNA helicase
  ------ inclusion threshold ------
      0.013   15.6   0.4       0.26   11.4   0.0    2.9  3  DUF87          Helicase HerA, central domain
      0.016   14.7   0.0      0.025   14.1   0.0    1.2  1  Peptidase_C13  Peptidase C13 family
      0.019   14.7   0.0        4.9    6.8   0.0    3.1  3  AAA_24         AAA domain
      0.024   14.0   0.0        2.8    7.2   0.0    2.8  2  DnaB_C         DnaB-like helicase C terminal domain
      0.026   14.1   0.0       0.42   10.1   0.0    2.3  2  AAA_7          P-loop containing dynein motor region
      0.031   14.7   0.2         57    4.1   0.0    4.1  4  AAA_17         AAA domain
      0.048   13.9   1.8         45    4.3   0.0    4.2  4  AAA_28         AAA domain
      0.061   13.3   1.1        2.2    8.3   0.0    3.0  2  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
      0.072   13.6   0.8         70    4.0   0.1    4.1  4  AAA_18         AAA domain
      0.083   11.5   2.5        1.2    7.6   0.0    2.8  3  DUF853         Bacterial protein of unknown function (DUF853)
      0.086   12.0   0.1       0.41    9.8   0.0    2.0  3  NB-ARC         NB-ARC domain
       0.09   12.7   1.2        7.9    6.4   0.2    2.8  3  NTPase_1       NTPase
      0.091   12.1   4.6        2.8    7.3   0.0    3.1  3  Mg_chelatase   Magnesium chelatase, subunit ChlI
        0.1   12.5   1.2        3.3    7.6   0.1    3.4  4  MobB           Molybdopterin guanine dinucleotide synthesis p
       0.14   11.6   0.0         36    3.7   0.0    3.6  4  TniB           Bacterial TniB protein
       0.18   11.6   0.0        3.4    7.4   0.0    2.3  2  PduV-EutP      Ethanolamine utilisation - propanediol utilisa
       0.19   11.0   0.5        7.1    5.9   0.0    3.0  3  Zeta_toxin     Zeta toxin
        0.2   10.5   0.1        3.9    6.3   0.1    2.7  3  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
        1.5    8.4   4.2          2    7.9   0.2    2.6  2  cobW           CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   1.8e-35   9.2e-33      25     219 ..     303     501 ..     283     518 .. 0.92
   2 !   65.5   0.0   8.6e-21   4.4e-18      17     128 ..     610     727 ..     601     729 .. 0.94
   3 !   26.3   0.1   8.2e-09   4.2e-06     183     241 ..     739     792 ..     733     794 .. 0.92
   4 !  159.6   0.0   1.6e-49     8e-47      18     240 ..     933    1165 ..     928    1167 .. 0.91
   5 !   20.0   0.0   6.9e-07   0.00035      30      89 ..    1232    1290 ..    1220    1318 .. 0.88

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 1.8e-35
                   ET.TS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSSCGGGTT-TTBSS.S-B-SHHHHHHHHHHHHHHHHHHH CS
  FtsK_SpoIIIE  25 ei.sgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgvelsalediphllsvavatdperalraleeLvkemeery 120
                   ++  g+pl ldl+++++hllv+G+ g+GK+t l+t++ +la+th+ +eV++ ++  +g  l+ + ++ph+ +v + +++ ++ ++l+ L+  +  r+
    KIR65279.1 303 DQpAGEPLWLDLASSEGHLLVVGRAGTGKTTLLRTIVGGLALTHSDQEVAFHCLESGGNWLGPMRRLPHVREVVGDDEVAEVGALLDRLERDVLARK 399
                   56689****************************************************99************************************** PP

                   HHHHHTT-SSHHHHHHHHHHHHHTT---B-TT-..........................-----------B-----EEEEEEC-HHHHHHHHHHH.. CS
  FtsK_SpoIIIE 121 alfreagvrsiaaydgeiaedpldifgdvflvlDnyddlaaene....ritsLsnqgpsygvhvlvtagrelekrpslvvivderieLrlaapkdss 213
                   +lfr    +s ++ ++  a+   +  +dvflv+D ++d+aa  +    r++ L+n+g+ ygvhv+v + ++ +++  l+ +  +rie rl++p++s+
    KIR65279.1 400 KLFRRYELESPTGLRARRATLDGGPYPDVFLVVDRWQDFAALLPdftaRVVDLANKGLGYGVHVAVVERSWRAIPEELLELPQARIETRLSQPQESR 496
                   ****************************************9988888************************************************54 PP

                   ..HHHH CS
  FtsK_SpoIIIE 214 vlveda 219
                       d+
    KIR65279.1 497 -VSPDL 501
                   .44444 PP

  == domain 2  score: 65.5 bits;  conditional E-value: 8.6e-21
                   TTEEEEEEETTS-EEEEEGGGS-......SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS.SCGGGTT-TTBSS...S-B-SHHHH CS
  FtsK_SpoIIIE  17 qlpvalgkeisgnplvldlkkma.....shllvaGatgsGKStalntLilSlatthtPeeVqliliDykgv.elsalediphlls..vavatdpera 105
                   +lp+ + ++  g+p+ ldlk++a     +h++++Ga+ sGK + l++L+l+la++h+  + + +l+D+kg+ +++ l+++ph++    + a+dp  +
    KIR65279.1 610 RLPIGVAED--GRPVLLDLKESAregmgPHGVLVGAPASGKGELLRALVLGLAARHSVARFNVLLMDFKGGaAFAGLDGLPHVAGhvANLAEDPALV 704
                   567777777..9***********************************************************************8877799******* PP

                   HHHHHHHHHHHHHHHHHHHHTT- CS
  FtsK_SpoIIIE 106 lraleeLvkemeeryalfreagv 128
                    r+ ++L  e+ +r++l+r+ag+
    KIR65279.1 705 DRLRDALGGELARRQELLRSAGT 727
                   *******************9986 PP

  == domain 3  score: 26.3 bits;  conditional E-value: 8.2e-09
                   ----B-----EEEEEEC-HHHHHHHHHHH....HHHHHHHHHHHCGGGTEEEEEEES-- CS
  FtsK_SpoIIIE 183 tagrelekrpslvvivderieLrlaapkdssvlvedaivRlarkgraaglHlllatqrl 241
                   +ag+el ++p l+v+ de+++L  ++p+       ++++R++r gra g+Hllla+qr+
    KIR65279.1 739 AAGAELVELPVLLVVCDEFADLLTVQPDL-----GELFARIGRVGRALGVHLLLAGQRV 792
                   6789999***************9999988.....9**********************96 PP

  == domain 4  score: 159.6 bits;  conditional E-value: 1.6e-49
                    TEEEEEEETTS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSSCGGGTT-TTBSS.S-B-SHHHHHHHHHHH CS
  FtsK_SpoIIIE   18 lpvalgkeisgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgvelsalediphllsvavatdperalraleeL 112 
                    + v+++ e++++pl+++l+++ +h+ v+Ga+ +GKSt + t +++la+th+P eVq++++D++g+ l++l ++ph+  va++ d+e + r+++e+
    KIR65279.1  933 GVVDRPYEQRRDPLTVELAGAGGHVAVVGAPLTGKSTLVLTVVAALALTHSPREVQFFCLDFGGGRLGVLAGLPHVSGVAGRRDVEAVGRTVAEV 1027
                    678999***************************************************************************************** PP

                    HHHHHHHHHHHHHTT-SSHHHHHHHH..HHHHHTT---B-TT-..........................-----------B-----EEEEEEC-H CS
  FtsK_SpoIIIE  113 vkemeeryalfreagvrsiaaydgei..aedpldifgdvflvlDnyddlaaene....ritsLsnqgpsygvhvlvtagrelekrpslvvivder 201 
                    v  +++r+  f+e g++s+aay+     +++p+d fgdvflv+D++ +l+ e e     +  ++ +g+ ygvh+lvt+gr+   rp l++ +  r
    KIR65279.1 1028 VGILDRREDRFAELGIESMAAYRRLRaeGAHPDDPFGDVFLVVDGWPTLRREHEeleeAVADVAVRGLTYGVHLLVTSGRWGDFRPGLRDRLETR 1122
                    *********************66655115589********************999*999************************************ PP

                    HHHHHHHHHH........HHHHHHHHHHHCGGGTEEEEEEES- CS
  FtsK_SpoIIIE  202 ieLrlaapkds....svlvedaivRlarkgraaglHlllatqr 240 
                    +eLrla+p +s    + ++  +++ ++r+   ++ H+l a +r
    KIR65279.1 1123 LELRLADPYESemgrRAAANVPERSPGRGLAGDRAHFLAALPR 1165
                    **********955533333333344555555999999999988 PP

  == domain 5  score: 20.0 bits;  conditional E-value: 6.9e-07
                    EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSSCGGGTT CS
  FtsK_SpoIIIE   30 plvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgvelsaled 89  
                    p+vld ++ + hl+v G  + GK++ l+     +a++h+P e +l+l Dy  + l+a+e+
    KIR65279.1 1232 PVVLDPATDP-HLVVFGDAECGKTNLLRLVARQVAARHSPAEARLVLADYRRGLLGAVEG 1290
                    8999999999.****************************************999988875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.3e-06   0.00066       4      89 ..     317     398 ..     313     410 .. 0.71
   2 ?    6.3   0.0     0.022        11       7     131 ..     637     791 ..     631     797 .. 0.54
   3 ?    5.2   0.0     0.045        23       5      29 ..     954     978 ..     950    1039 .. 0.83
   4 !   14.6   0.0     6e-05     0.031       5     127 ..    1240    1376 ..    1238    1381 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.3e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst...sskdllrellralglelkaerlsseellealeqalrar 89 
                 ++g+l+v+G +GtGKTtllr+++  l    + ++ + ev+f +l s++   ++   l ++ + +g++  a   +  +ll++le+ + ar
  KIR65279.1 317 SEGHLLVVGRAGTGKTTLLRTIVGGL----ALTHSDQEVAFHCLESGGnwlGPMRRLPHVREVVGDDEVA---EVGALLDRLERDVLAR 398
                 789********************999....4555788888888888884444444444444444444444...6666666666666655 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.022
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl..lrellralglelka...................erlsseellealeq 84 
                 ++v++G + +GK  llr l+  l ++ +   +r  v++++ +++   + l  l +++  + + +++                   e l+s   l   + 
  KIR65279.1 637 HGVLVGAPASGKGELLRALVLGLAARHSV--ARFNVLLMDFKGGAAFAGLdgLPHVAGHVANLAEDpalvdrlrdalggelarrqELLRSAGTLPNWWA 733
                 89********************9655444..55555555555555333332244444444443333333333333333322224423333333333333 PP

      AAA_22  85 alrarav........ielliiDEaqhlr..seealeeLrsllnl.srkgvqliLvGtp 131
                 + +ara+        + l++ DE+  l   ++++ e + ++  + +  gv+l+L+G++
  KIR65279.1 734 YEQARAAgaelvelpVLLVVCDEFADLLtvQPDLGELFARIGRVgRALGVHLLLAGQR 791
                 3333333557778877888888877744354444444455555555777777777775 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.045
      AAA_22   5 agilvvtGesGtGKTtllrrlleql 29 
                  g+++v+G + tGK+tl+ +++  l
  KIR65279.1 954 GGHVAVVGAPLTGKSTLVLTVVAAL 978
                 6899**************9999887 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 6e-05
      AAA_22    5 agilvvtGesGtGKTtllrrlleqldeeakaee................erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqa 85  
                  + +lvv+G + +GKT llr +++q  ++ +++e                e+ +++ + +ps+ s ++   e+   l+++l ++  + ++l+e+ +  
  KIR65279.1 1240 DPHLVVFGDAECGKTNLLRLVARQVAARHSPAEarlvladyrrgllgavEGEHLLDY-APSEQSFAQTVAEIRAVLHERLPGPDVTPQQLRERSWWR 1335
                  5689*********************9988888899***9965555555444443333.334444555555555556655555555566666655554 PP

      AAA_22   86 lraravielliiDEaqhlr..seealeeLrsllnl.srkgvqliL 127 
                    +     ++++D+ + +     + l+ Lr+ll + ++ g++++L
  KIR65279.1 1336 GPEL----FVLVDDYDLMAagGTNPLNALRELLPVaGDVGLHVVL 1376
                  4444....6699999999765477777777777666688888877 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     5e-05     0.026      22      45 ..     316     339 ..     310     452 .. 0.85
   2 !    8.0   0.1    0.0066       3.4      12      99 ..     623     720 ..     621     786 .. 0.55
   3 ?    6.4   0.2     0.021        11      21      48 ..     951     978 ..     941    1023 .. 0.86
   4 !   13.6   0.0   0.00013     0.068      23     158 ..    1238    1360 ..    1227    1376 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5e-05
      AAA_16  22 grpelvllsGesGvGKsslvrell 45 
                 ++++ +l++G +G+GK++l+r++ 
  KIR65279.1 316 SSEGHLLVVGRAGTGKTTLLRTIV 339
                 55689***************9875 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0066
      AAA_16  12 LlsalervrsgrpelvllsGesGvGKsslvrellralekd.............ggiflrgkcdqlesa........ipy.sa.laqalareellrqlld 87 
                 Ll++ e++r+g ++  +l+G++++GK  l+r+l   l ++             +g            +        +p  +  +a+++ ++  l + l+
  KIR65279.1 623 LLDLKESAREGMGPHGVLVGAPASGKGELLRALVLGLAARhsvarfnvllmdfKG------------GaafagldgLPHvAGhVANLA-EDPALVDRLR 708
                 67788899**********************9987666666333333333222211............111112222222122233333.3344444444 PP

      AAA_16  88 eaesaeleawre 99 
                 +a   el++ +e
  KIR65279.1 709 DALGGELARRQE 720
                 434434444444 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.021
      AAA_16  21 sgrpelvllsGesGvGKsslvrellral 48 
                 +g ++ v ++G++ +GKs+lv ++  al
  KIR65279.1 951 AGAGGHVAVVGAPLTGKSTLVLTVVAAL 978
                 677899***************7776554 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 0.00013
      AAA_16   23 rp.elvllsGesGvGKsslvrellralekd....ggiflrgkcdqlesaipysalaqalareellrqllde.aesaeleawrekleealaavpelag 113 
                   + + +++ G++ +GK+ l+r ++r++ ++    ++ ++ +++++         l+ a + e+ll    +e + ++ +++ r+ l+e+l        
  KIR65279.1 1238 ATdPHLVVFGDAECGKTNLLRLVARQVAARhspaEARLVLADYRRG--------LLGAVEGEHLLDYAPSEqSFAQTVAEIRAVLHERLP------- 1319
                  4458899******************999993333333333333333........777777777777777774444445555555555555....... PP

      AAA_16  114 aeasrllellkrll.allsrderplvlvlDdlqwadeaslqllaaL 158 
                         ++  + l +++  +++ l +++Dd +   ++  + l aL
  KIR65279.1 1320 -----GPDVTPQQLrERSWWRGPELFVLVDDYDLMAAGGTNPLNAL 1360
                  .....33333333322223323336666666666655444444444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   7.6e-06    0.0039       3      37 ..     321     352 ..     320     359 .. 0.85
   2 ?    2.0   0.0      0.33   1.7e+02       4      31 ..     639     666 ..     638     675 .. 0.84
   3 ?    3.2   0.0      0.15        75       3      36 ..     957     989 ..     956     994 .. 0.84
   4 !    9.9   0.0    0.0013      0.64       3     115 ..    1243    1366 ..    1242    1400 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 7.6e-06
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEE CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklv 37 
                 +++ G+aG GKTtLl+ ++  +a  + +q+   + 
  KIR65279.1 321 LLVVGRAGTGKTTLLRTIVGGLALTHSDQE---VA 352
                 6899*******************9998884...33 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.33
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpq 31 
                 +l G++ sGK  Ll+ l+l +a+++  +
  KIR65279.1 639 VLVGAPASGKGELLRALVLGLAARHSVA 666
                 68999*****************999765 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.15
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SE CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafkl 36 
                 v++ G++  GK+tL+  ++ a+a  + p++ +++
  KIR65279.1 957 VAVVGAPLTGKSTLVLTVVAALALTHSPRE-VQF 989
                 678999999***************999995.333 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.0013
                  EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-....................-HCHHHCCCCTS--SSS-CCHHHHCCSCCC CS
       NACHT    3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna.................rsladllfsqlpepaapvsevwavllelper 82  
                  +++ G+a +GKT Ll+ +a++ a+++ p++a +lv+    r l    +                    ++ +l++ lp p  ++++ ++  + +   
  KIR65279.1 1243 LVVFGDAECGKTNLLRLVARQVAARHSPAEA-RLVLADYRRGLLGAVEGehlldyapseqsfaqtvAEIRAVLHERLPGPDVTPQQLRERSWWRGPE 1338
                  5788*************************86.87775444433332211233344444444444444444445555555555555555555555555 PP

                  EEEEEE-STT-SS-TCH.........HHHHHCT CS
       NACHT   83 lLlilDglDelvtdlgqkekqpvrtlLselirk 115 
                  l  ++D++D +++   +       + L+el++ 
  KIR65279.1 1339 LFVLVDDYDLMAAGGTN-----PLNALRELLPV 1366
                  55666666666653333.....55555666555 PP

>> Peptidase_C14  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   6.7e-12   3.4e-09       1     235 [.       4     233 ..       4     243 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 6.7e-12
                    EEEEEEECSTTSSTCC..-STTHHHHHHHHHHHHHHHTTEEEEEEEGGEES-CHHHHHHHHHHHHCHSGGTTESEEEEEEESEEET.......... CS
  Peptidase_C14   1 kkAliIginnYpgtka..eLrGcanDaermaklLvkrlgFevenililtddptgknirkalkwlvksadhspgDslvvhysGHGtrvpae...... 88 
                    ++Al+I ++ Y   +a  +L  +   a+++  lL         +  +l ++  ++ i++a++ + + a   p D +++++sGHG+r  +       
     KIR65279.1   4 RRALLIANDRYV-DEAlsDLYAPREEARDLLSLL-ADADIGAFDQTMLLENESKSSIERAMESMLRAAG--PEDLVLLYFSGHGVRSSKRgrlhla 95 
                    69**********.56568****************.665655555556999***************9999..**************85555787654 PP

                    .EEECTTCSSEEEHHHHHHTTSTTTHGGGTTS.-EEEEEESESSSBCBEEEEEEES-SSSHCCCHCHHHHHHCSHHCEEECTTTSEEEEESSSTTB CS
  Peptidase_C14  89 .civpvdvnsliqdddirdlfggdklpslagk.pktiiidaCrgglldkgiekdtsptnkfeedssskekkpekqslsklpseadvlllsgcqddq 182
                         vd    ++ + +   f+ ++l++  +    ++++d+C  g++    e +  +t               + +  +l+++ + ++++++   +
     KIR65279.1  96 vSNTEVD---RLSSTAVSASFV-RELLDESDAaSFVLLLDCCYSGAF----EGQGLKTTD------------DLAIDGELKTGYGRYVITATNSVE 171
                    4333444...333333333342.333333333499********5555....233333333............44567999999999********** PP

                    SCEEETTTEE.......HHHHHHHHHHHHHTTTSBHH......HHHHHHHHHHCCTTTCTTSBEEE CS
  Peptidase_C14 183 tSadgsengs.......aftqalqkvleekggkislk......ellnkvrkrlkslkkkngykqrP 235
                     + dg++ +        aft+++++ l++ + + + +      +l++ vr +l +++    ++q P
     KIR65279.1 172 RADDGRPASGaaprlrsAFTETVIQGLSTGAADLTGQgritpdDLWRYVRMELPRRT----TSQSP 233
                    *******9999****************888885555577778899999999993333....33333 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   0.00011     0.054       7      40 ..     315     348 ..     312     357 .. 0.83
   2 ?    4.6   0.0     0.071        37      10      55 ..     635     680 ..     627     767 .. 0.86
   3 ?    5.2   0.1      0.05        25       9      43 ..     953     985 ..     947     996 .. 0.79
   4 ?    1.9   0.0      0.51   2.6e+02      10      48 ..    1240    1277 ..    1234    1306 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.00011
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggv 40 
                 a++e++llv++ +GtGKT++l++iv  l  +++ 
  KIR65279.1 315 ASSEGHLLVVGRAGTGKTTLLRTIVGGLALTHSD 348
                 567899******************9988777654 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.071
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAa 55 
                  ++ ++++ p +GK ++l++ v  l ++++v+  ++ll+ f g Aa
  KIR65279.1 635 GPHGVLVGAPASGKGELLRALVLGLAARHSVARFNVLLMDFKGGAA 680
                 5677999*************************9****999988887 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.05
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkpe 43 
                 + ++++v++ p tGK++++ ++va l  +++   +
  KIR65279.1 953 AGGHVAVVGAPLTGKSTLVLTVVAALALTHSP--R 985
                 567899******************99988844..3 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.51
      AAA_19   10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillv 48  
                  +++l+v + + +GKT +l+ + + + ++++ ++e  l++
  KIR65279.1 1240 DPHLVVFGDAECGKTNLLRLVARQVAARHS-PAEARLVL 1277
                  678999************999988888774.44555554 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0      0.01       5.2      20      54 ..     305     339 ..     289     416 .. 0.82
   2 ?    0.9   0.1      0.57   2.9e+02      36      79 ..     638     675 ..     633     788 .. 0.82
   3 !   13.5   0.0   7.8e-05      0.04      20      60 ..     941     981 ..     926     993 .. 0.82
   4 ?   -0.8   0.0       1.9   9.6e+02      37      59 ..    1244    1266 ..    1240    1283 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.01
      AAA_25  20 pprrwlvkgllpagelallaGapgtGKttlaldla 54 
                 p  + l+ +l   ++  l++G+ gtGKttl+  ++
  KIR65279.1 305 PAGEPLWLDLASSEGHLLVVGRAGTGKTTLLRTIV 339
                 55567777888888899*************86555 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.57
      AAA_25  36 allaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsa 79 
                 ++l+Gap++GK  l+  l+l +a  +++       + +Vl+ ++
  KIR65279.1 638 GVLVGAPASGKGELLRALVLGLAARHSV------ARFNVLLMDF 675
                 7899*******99999999999965544......4445555555 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 7.8e-05
      AAA_25  20 pprrwlvkgllpagelallaGapgtGKttlaldlalavatG 60 
                 ++r+ l  +l  ag+ ++++Gap tGK+tl+l +++a+a+ 
  KIR65279.1 941 QRRDPLTVELAGAGGHVAVVGAPLTGKSTLVLTVVAALALT 981
                 455666669999*************************9954 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.9
      AAA_25   37 llaGapgtGKttlaldlalavat 59  
                  +++G+  +GKt l+  +a  va 
  KIR65279.1 1244 VVFGDAECGKTNLLRLVARQVAA 1266
                  689**********9999999994 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0013      0.68       3      26 ..     322     345 ..     320     354 .. 0.82
   2 ?    2.5   0.0      0.29   1.5e+02       3      22 ..     639     658 ..     637     670 .. 0.80
   3 !    7.3   0.0    0.0096       4.9       1      22 [.     956     977 ..     956     987 .. 0.82
   4 ?   -1.1   0.0       3.9     2e+03       2      24 ..    1243    1265 ..    1242    1273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0013
                 EEEESTTSSHHHHHHHHHTSTEEE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaiv 26 
                 ++vGr  +GK+tL+++++g  a +
  KIR65279.1 322 LVVGRAGTGKTTLLRTIVGGLALT 345
                 79****************986655 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.29
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 ++vG p +GK  L++al+  
  KIR65279.1 639 VLVGAPASGKGELLRALVLG 658
                 69***************854 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0096
                 EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge 22 
                 +va+vG p +GKStL+ + + +
  KIR65279.1 956 HVAVVGAPLTGKSTLVLTVVAA 977
                 59*************9877765 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 3.9
                  EEEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1    2 vaivGrpNvGKStLinaltgeka 24  
                   +++G    GK+ L++   +++a
  KIR65279.1 1243 LVVFGDAECGKTNLLRLVARQVA 1265
                  5799***********99888743 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   2.5e-05     0.013      14      40 ..     315     340 ..     311     354 .. 0.79
   2 ?    3.4   0.1      0.11        55      22      98 ..     639     758 ..     628     790 .. 0.78
   3 ?    1.9   0.1      0.32   1.6e+02      14      43 ..     951     979 ..     941    1002 .. 0.77
   4 ?   -1.0   0.0       2.4   1.3e+03      21      45 ..    1243    1267 ..    1237    1307 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.5e-05
      AAA_30  14 ltsgdrvavltGpAGtGKttalkalre 40 
                 ++s+    +++G+AGtGKtt+l++++ 
  KIR65279.1 315 ASSE-GHLLVVGRAGTGKTTLLRTIVG 340
                 3444.5899**************9964 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.11
      AAA_30  22 vltGpAGtGKttalkalreaweaag............................grviglAptgkaAkvLaeelgieastiakllkrlk........... 81 
                 vl+G++ +GK  +l+al+  ++a+                             g+v+ lA   +  ++L+++lg e ++ ++ll++ +           
  KIR65279.1 639 VLVGAPASGKGELLRALVLGLAARHsvarfnvllmdfkggaafagldglphvaGHVANLAEDPALVDRLRDALGGELARRQELLRSAGtlpnwwayeqa 737
                 7999999**********98888886699999999999999999999999999999****************9999888888888777677777777667 PP

      AAA_30  82 ...grarlepg.tllivDEag 98 
                    g++ +e    l++ DE +
  KIR65279.1 738 raaGAELVELPvLLVVCDEFA 758
                 776333444444666667766 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.32
      AAA_30  14 ltsgdrvavltGpAGtGKttalkalreawe 43 
                 ++ g   ++++G++ tGK+t++ ++++a++
  KIR65279.1 951 AGAGG-HVAVVGAPLTGKSTLVLTVVAALA 979
                 44443.688999********9888866654 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.4
      AAA_30   21 avltGpAGtGKttalkalreaweaa 45  
                   v+ G A  GKt +l+ +++ ++a+
  KIR65279.1 1243 LVVFGDAECGKTNLLRLVARQVAAR 1267
                  577889999*******996666554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.3    0.0033       1.7      22      39 ..     318     335 ..     312     342 .. 0.84
   2 ?    3.4   0.0      0.12        62      25      55 ..     638     669 ..     628     671 .. 0.85
   3 ?    4.5   0.0     0.056        29      18      41 ..     949     973 ..     942     986 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0033
      AAA_29  22 kgatlltGpsGsGKSTll 39 
                 +g  l++G+ G+GK+Tll
  KIR65279.1 318 EGHLLVVGRAGTGKTTLL 335
                 5689*************8 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.12
      AAA_29  25 tlltGpsGsGKSTllDAiqalLvpak.kvrfN 55 
                  +l+G+  sGK  ll A+   L +++  +rfN
  KIR65279.1 638 GVLVGAPASGKGELLRALVLGLAARHsVARFN 669
                 589***************99999999778888 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.056
      AAA_29  18 eidlkg.atlltGpsGsGKSTllDA 41 
                 e+  +g  + ++G+  +GKSTl+  
  KIR65279.1 949 ELAGAGgHVAVVGAPLTGKSTLVLT 973
                 5555566899************944 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   0.00025      0.13      13      35 ..     320     342 ..     312     354 .. 0.83
   2 ?   -2.1   0.0       9.9   5.1e+03      15      32 ..     639     656 ..     634     663 .. 0.86
   3 ?    2.3   0.1      0.45   2.3e+02      10      31 ..     953     974 ..     946     982 .. 0.85
   4 ?    2.4   0.0      0.41   2.1e+02      13      36 ..    1242    1265 ..    1233    1313 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00025
                 EEEEEESTTSSHHHHHHHHTTSS CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagll 35 
                  + +vG+ G+GK+tLl+++ g l
  KIR65279.1 320 HLLVVGRAGTGKTTLLRTIVGGL 342
                 46789**************9965 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 9.9
                 EEEESTTSSHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlklla 32 
                 ++vG   +GK  Ll++l 
  KIR65279.1 639 VLVGAPASGKGELLRALV 656
                 79************9985 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.45
                 TTSEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkll 31 
                 +g  va+vG   +GKStL+ ++
  KIR65279.1 953 AGGHVAVVGAPLTGKSTLVLTV 974
                 67899*************8765 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.41
                  EEEEEESTTSSHHHHHHHHTTSS- CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   13 kvaivGenGaGKStLlkllagllk 36  
                   ++++G+  +GK+ Ll+l+a+++ 
  KIR65279.1 1242 HLVVFGDAECGKTNLLRLVARQVA 1265
                  577899999**********99876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1    0.0043       2.2       1      22 [.     321     342 ..     321     369 .. 0.83
   2 ?    2.3   0.1      0.42   2.2e+02       2      23 ..     958     979 ..     957    1004 .. 0.78
   3 ?    5.0   0.0      0.06        31       2      24 ..    1244    1266 ..    1243    1318 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0043
                 EEEESSTTSSHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel 22 
                 +l++G  GtGKT+l + ++  l
  KIR65279.1 321 LLVVGRAGTGKTTLLRTIVGGL 342
                 699*************998765 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.42
                 EEESSTTSSHHHHHHHHHHHHT CS
         AAA   2 llyGppGtGKTllakavakelg 23 
                  ++G p tGK++l+  v+  l 
  KIR65279.1 958 AVVGAPLTGKSTLVLTVVAALA 979
                 589***********99998873 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.06
                  EEESSTTSSHHHHHHHHHHHHTH CS
         AAA    2 llyGppGtGKTllakavakelgv 24  
                  +++G   +GKT l + va+++ +
  KIR65279.1 1244 VVFGDAECGKTNLLRLVARQVAA 1266
                  689999************99753 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.015       7.7      23      51 ..     321     351 ..     313     356 .. 0.76
   2 ?   -2.1   0.0       5.9     3e+03      10      41 ..     625     656 ..     623     666 .. 0.85
   3 !    8.5   0.0    0.0034       1.7      18      43 ..    1238    1263 ..    1233    1272 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.015
    ATPase_2  23 yfiYGpegsGKtaLlkeiienl..edkdkyv 51 
                 +++ G+ g GKt+Ll+ i+  l   ++d++v
  KIR65279.1 321 LLVVGRAGTGKTTLLRTIVGGLalTHSDQEV 351
                 5788**************9877423444455 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.9
    ATPase_2  10 eleeilerepneiyfiYGpegsGKtaLlkeii 41 
                 +l+e ++++  +  ++ G   sGK  Ll+ ++
  KIR65279.1 625 DLKESAREGMGPHGVLVGAPASGKGELLRALV 656
                 67888999999999999***********9987 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0034
    ATPase_2   18 epneiyfiYGpegsGKtaLlkeiien 43  
                   +++ ++++G   +GKt Ll+ ++ +
  KIR65279.1 1238 ATDPHLVVFGDAECGKTNLLRLVARQ 1263
                  577889**************987765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0046       2.4       3      30 ..     322     349 ..     321     451 .. 0.86
   2 ?    1.8   0.0      0.49   2.5e+02       3      20 ..     639     656 ..     639     670 .. 0.85
   3 ?    3.4   0.1      0.15        76       2      24 ..     957     979 ..     957     984 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0046
      AAA_33   3 llvGlpGsGKstlaerllkklgavllss 30 
                 l+vG +G+GK+tl++ ++  l+ ++ ++
  KIR65279.1 322 LVVGRAGTGKTTLLRTIVGGLALTHSDQ 349
                 79*************9987666655555 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.49
      AAA_33   3 llvGlpGsGKstlaerll 20 
                 +lvG+p+sGK  l++ l+
  KIR65279.1 639 VLVGAPASGKGELLRALV 656
                 589********9999986 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.15
      AAA_33   2 vllvGlpGsGKstlaerllkklg 24 
                 v +vG+p +GKstl+  ++++l+
  KIR65279.1 957 VAVVGAPLTGKSTLVLTVVAALA 979
                 5689***********99988776 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.013       6.5       2      30 ..     321     349 ..     320     359 .. 0.79
   2 ?   -0.4   0.0       2.5   1.3e+03       3      21 ..     639     657 ..     638     673 .. 0.85
   3 ?    0.3   0.0       1.5   7.6e+02       2      20 ..     957     975 ..     956     988 .. 0.86
   4 ?    3.7   0.0      0.13        68       2      23 ..    1243    1264 ..    1242    1282 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.013
                 EEEESSTTSSHHHHHHCHCT-CCC-EEET CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekeks 30 
                 +++vG +g+GKt+ll+ +v +   +++++
  KIR65279.1 321 LLVVGRAGTGKTTLLRTIVGGLALTHSDQ 349
                 789*************9997766555555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 2.5
                 EEESSTTSSHHHHHHCHCT CS
         Roc   3 vlvGdsgvGKtsllkrfve 21 
                 vlvG  ++GK  ll+ +v 
  KIR65279.1 639 VLVGAPASGKGELLRALVL 657
                 79************99875 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 1.5
                 EEEESSTTSSHHHHHHCHC CS
         Roc   2 vvlvGdsgvGKtsllkrfv 20 
                 v +vG   +GK++l+  +v
  KIR65279.1 957 VAVVGAPLTGKSTLVLTVV 975
                 789***********98766 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.13
                  EEEESSTTSSHHHHHHCHCT-C CS
         Roc    2 vvlvGdsgvGKtsllkrfvedk 23  
                  +v+ Gd++ GKt ll+ + ++ 
  KIR65279.1 1243 LVVFGDAECGKTNLLRLVARQV 1264
                  7899*********997655444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.055        28       2      23 ..     322     343 ..     321     361 .. 0.80
   2 ?    1.3   0.0      0.84   4.3e+02       2      23 ..     958     979 ..     957     991 .. 0.81
   3 ?    5.4   0.0     0.045        23       2      26 ..    1244    1268 ..    1243    1282 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.055
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   +++G++g+GK+tl ++++  l+
    KIR65279.1 322 LVVGRAGTGKTTLLRTIVGGLA 343
                   689***********99887776 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.84
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                    ++G++ +GKStl+ ++++al+
    KIR65279.1 958 AVVGAPLTGKSTLVLTVVAALA 979
                   589***********99888887 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.045
  RNA_helicase    2 wlyGpsgeGKStlakeLakallkkl 26  
                    +++G++ +GK++l + +a++++ + 
    KIR65279.1 1244 VVFGDAECGKTNLLRLVARQVAARH 1268
                    79*****************998654 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0005      0.26      14      48 ..     310     343 ..     301     350 .. 0.84
   2 ?   -1.6   0.6       4.7   2.4e+03      25      45 ..     956     976 ..     946     984 .. 0.86
   3 ?   -0.2   0.0       1.7   8.8e+02      14      49 ..    1233    1266 ..    1226    1280 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0005
       DUF87  14 vyldlnklvtrHlAilgsTGsGKSntvavLleell 48 
                 + ldl +  + Hl+++g++G+GK+++ + ++  l+
  KIR65279.1 310 LWLDLASS-EGHLLVVGRAGTGKTTLLRTIVGGLA 343
                 56777555.88*******************98776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.7
       DUF87  25 HlAilgsTGsGKSntvavLle 45 
                 H+A++g   +GKS++v   ++
  KIR65279.1 956 HVAVVGAPLTGKSTLVLTVVA 976
                 9**************976665 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.7
       DUF87   14 vyldlnklvtrHlAilgsTGsGKSntvavLleelle 49  
                  v ld   +   Hl ++g +  GK+n+ ++  +++++
  KIR65279.1 1233 VVLDP--ATDPHLVVFGDAECGKTNLLRLVARQVAA 1266
                  55555..4468*****************99988875 PP

>> Peptidase_C13  Peptidase C13 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.9e-05     0.025     103     166 ..      69     141 ..      48     169 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.9e-05
                    --TTSEEEEEEES-EETT........EEE-S.......SSSEEEHHHHHHHHHHHHHCT--SEEEEEEESTTGGGGTTT CS
  Peptidase_C13 103 sgkeDnvfiyltdhGapg........vlevp.......eeddleakdLaeaLkkmhakkkykklviyleaceSgsmfee 166
                     g+eD v++y++ hG +         +  v        +++ ++a+  +e+L+++ a+     +v+ l+ c+Sg +  +
     KIR65279.1  69 AGPEDLVLLYFSGHGVRSskrgrlhlA--VSntevdrlSSTAVSASFVRELLDESDAAS----FVLLLDCCYSGAFEGQ 141
                    689************988889988553..334322244455555555556666555555....5**********98655 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0095       4.9       5      22 ..     321     338 ..     318     365 .. 0.85
   2 ?    3.1   0.0      0.13        67       5      23 ..     957     986 ..     954    1004 .. 0.72
   3 ?   -0.2   0.0       1.3   6.8e+02       4      22 ..    1242    1260 ..    1239    1310 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0095
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l++G +g+GKTtl++++
  KIR65279.1 321 LLVVGRAGTGKTTLLRTI 338
                 689************998 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.13
      AAA_24   5 iliyGpsgiGKTtlakel...........g 23 
                 ++++G + +GK+tl+++            +
  KIR65279.1 957 VAVVGAPLTGKSTLVLTVvaalalthsprE 986
                 789************998655555554433 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.3
      AAA_24    4 kiliyGpsgiGKTtlakel 22  
                   ++++G+++ GKT l++  
  KIR65279.1 1242 HLVVFGDAECGKTNLLRLV 1260
                  589**********998765 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0055       2.8      19      61 ..     319     361 ..     314     391 .. 0.79
   2 ?    3.3   0.0     0.086        44      23      58 ..     958     994 ..     949    1000 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0055
                 TXEEEEEEXTTSSHHHHHHHHHHHHH.HCSTSEEEEEESSSXHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
      DnaB_C  19 gdliiiAarpsmGktalalniaenaa.vkeklpvavfslemsae 61 
                 g+l+ + +r+++Gkt+l  +i+   a ++++++va+  le   +
  KIR65279.1 319 GHLL-VVGRAGTGKTTLLRTIVGGLAlTHSDQEVAFHCLESGGN 361
                 5555.558**************99883455678*****998665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.086
                 EEEEXTTSSHHHHHHHHHHHHHHCST.SEEEEEESSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
      DnaB_C  23 iiAarpsmGktalalniaenaavkek.lpvavfslem 58 
                  + + p +Gk++l+l+++++ a +++  +v +f l+ 
  KIR65279.1 958 AVVGAPLTGKSTLVLTVVAALALTHSpREVQFFCLDF 994
                 45678*************99997555256****9985 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00081      0.42      29      57 ..     314     342 ..     308     355 .. 0.82
   2 ?    1.0   0.0      0.51   2.6e+02      29      58 ..     950     979 ..     940     991 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00081
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkkl 57 
                 l +++ ++l+vG +GtGKt+++++++  l
  KIR65279.1 314 LASSEGHLLVVGRAGTGKTTLLRTIVGGL 342
                 5678889**************99877665 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.51
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkkld 58 
                 l  ++ +v +vG   tGK++++ +++ +l 
  KIR65279.1 950 LAGAGGHVAVVGAPLTGKSTLVLTVVAALA 979
                 5667789**************999888776 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.11        57       1      23 [.     324     346 ..     324     383 .. 0.88
   2 ?    2.9   0.0      0.26   1.4e+02       1      18 [.     641     658 ..     641     666 .. 0.83
   3 ?    1.4   0.0      0.79     4e+02       1      23 [.     960     982 ..     960     984 .. 0.92
   4 ?   -0.4   0.0       2.7   1.4e+03      40      95 ..    1032    1089 ..    1017    1102 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.11
                 EE-TTSSHHHHHHHHHHHHTEEE CS
      AAA_17   1 lGgPGsGKgtqceklvekygfth 23 
                 +G  G GK+t+++++v  + +th
  KIR65279.1 324 VGRAGTGKTTLLRTIVGGLALTH 346
                 5889************9999988 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.26
                 EE-TTSSHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvek 18 
                 +G P sGKg++++ lv  
  KIR65279.1 641 VGAPASGKGELLRALVLG 658
                 7***********999855 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.79
                 EE-TTSSHHHHHHHHHHHHTEEE CS
      AAA_17   1 lGgPGsGKgtqceklvekygfth 23 
                 +G P  GK+t++ ++v  + +th
  KIR65279.1 960 VGAPLTGKSTLVLTVVAALALTH 982
                 79**********99999999988 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 2.7
                  HSSHHHHCTSHHHHHHHHHHHHHHHHHHHH..HSSEEEEEE-SEEEETTEEEESSHHH CS
      AAA_17   40 akardemrklpleekkelqkeaaekiaeea..kkkgvlvdghprikeqagfldglpke 95  
                  ++ +d++++l +e   +++++ ae    ++  ++  ++vdg p++++++++l++  ++
  KIR65279.1 1032 DRREDRFAELGIESMAAYRRLRAEGAHPDDpfGDVFLVVDGWPTLRREHEELEEAVAD 1089
                  56677788888888888887777777666643333369*******9999998876555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2      0.24   1.2e+02       4      18 ..     323     337 ..     321     361 .. 0.85
   2 ?    1.6   0.0      0.56   2.8e+02       3      19 ..     639     655 ..     638     670 .. 0.88
   3 ?    4.3   0.0     0.087        45       2      16 ..     957     971 ..     956     988 .. 0.82
   4 ?   -0.5   0.0       2.5   1.3e+03       6      36 ..    1247    1278 ..    1243    1311 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.24
      AAA_28   4 itGgestGKTtllea 18 
                 ++G  +tGKTtll+ 
  KIR65279.1 323 VVGRAGTGKTTLLRT 337
                 67889*******986 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.56
      AAA_28   3 vitGgestGKTtlleaL 19 
                 v++G++ +GK  ll+aL
  KIR65279.1 639 VLVGAPASGKGELLRAL 655
                 89*************99 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.087
      AAA_28   2 ivitGgestGKTtll 16 
                 ++++G++ tGK+tl+
  KIR65279.1 957 VAVVGAPLTGKSTLV 971
                 899**********98 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 2.5
      AAA_28    6 GgestGKTtlleaLaar.gypvvpEaareile 36  
                  G   +GKT ll+  a++   ++ p  ar +l 
  KIR65279.1 1247 GDAECGKTNLLRLVARQvAARHSPAEARLVLA 1278
                  55559******999977555555555555554 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0043       2.2      21      45 ..     320     344 ..     300     352 .. 0.80
   2 ?    2.0   0.0      0.39     2e+02      22      45 ..    1243    1266 ..    1227    1273 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0043
                 EEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  21 vilLeGdLGaGKTtlvrglakalgv 45 
                  +l  G  G+GKTtl r ++ +l +
  KIR65279.1 320 HLLVVGRAGTGKTTLLRTIVGGLAL 344
                 58899**************999866 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.39
                  EEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE   22 ilLeGdLGaGKTtlvrglakalgv 45  
                  ++  Gd  +GKT l r +a+++  
  KIR65279.1 1243 LVVFGDAECGKTNLLRLVARQVAA 1266
                  778899*************99854 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1      0.14        70       2      18 ..     322     338 ..     321     362 .. 0.86
   2 ?    3.1   0.0      0.25   1.3e+02       3      19 ..     640     660 ..     639     681 .. 0.74
   3 ?    0.9   0.0       1.2   6.2e+02       1      15 [.     957     971 ..     957     992 .. 0.88
   4 ?   -0.9   0.0       4.3   2.2e+03       3      22 ..    1245    1264 ..    1244    1311 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.14
      AAA_18   2 lltGtpGvGKttlakeL 18 
                 l+ G +G+GKttl + +
  KIR65279.1 322 LVVGRAGTGKTTLLRTI 338
                 68999********9866 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.25
      AAA_18   3 ltGtpGvGKttlakeL....s 19 
                 l G+p++GK +l ++L    +
  KIR65279.1 640 LVGAPASGKGELLRALvlglA 660
                 89*************944442 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 1.2
      AAA_18   1 IlltGtpGvGKttla 15 
                 +++ G+p +GK+tl 
  KIR65279.1 957 VAVVGAPLTGKSTLV 971
                 6899*********96 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 4.3
      AAA_18    3 ltGtpGvGKttlakeLskrl 22  
                  + G + +GKt l + +++  
  KIR65279.1 1245 VFGDAECGKTNLLRLVARQV 1264
                  789999********998874 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0024       1.2       7      45 ..     304     342 ..     298     362 .. 0.83
   2 ?    2.5   0.1     0.083        43      22      61 ..     636     679 ..     613     710 .. 0.72
   3 ?   -1.9   0.1       1.9   9.6e+02       9      61 ..     942     998 ..     938    1012 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0024
      DUF853   7 keaeqelalalklanrhGliaGatGtGktvtLqvlaesl 45 
                 + a ++l l l+ +  h l+ G +GtGkt  L+++  +l
  KIR65279.1 304 QPAGEPLWLDLASSEGHLLVVGRAGTGKTTLLRTIVGGL 342
                 5667889999999********************987665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.083
      DUF853  22 rhGliaGatGtGktvtLqvl....aeslseaGvpvfladvkGdL 61 
                  hG++ Ga   Gk   L+ l    a   s a   v+l d kG  
  KIR65279.1 636 PHGVLVGAPASGKGELLRALvlglAARHSVARFNVLLMDFKGGA 679
                 49***************9862222556677888899*****964 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.9
      DUF853   9 aeqelalalklanrhGliaGatGtGk.tvtLqv...laeslseaGvpvfladvkGdL 61 
                 + ++l+++l+ a  h  + Ga  tGk t  L v   la + s   v  f+ d  G  
  KIR65279.1 942 RRDPLTVELAGAGGHVAVVGAPLTGKsTLVLTVvaaLALTHSPREVQFFCLDFGGGR 998
                 56778888999999***********94445554111555678888999999887754 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00079      0.41      22      43 ..     320     341 ..     309     372 .. 0.84
   2 ?   -2.1   0.1       3.4   1.7e+03      23      43 ..     957     977 ..     951     986 .. 0.85
   3 ?   -3.6   0.0       9.9   5.1e+03      23      43 ..    1243    1263 ..    1239    1266 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00079
                 EEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnk 43 
                  + +vG++G GKttl++ i+  
  KIR65279.1 320 HLLVVGRAGTGKTTLLRTIVGG 341
                 4779*************99865 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.4
                 EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  23 valvGmgGvGKttlakqilnk 43 
                 va+vG +  GK+tl+  ++  
  KIR65279.1 957 VAVVGAPLTGKSTLVLTVVAA 977
                 899***********9888765 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 9.9
                  EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC   23 valvGmgGvGKttlakqilnk 43  
                  + + G + +GKt l++ + ++
  KIR65279.1 1243 LVVFGDAECGKTNLLRLVARQ 1263
                  568999*******99887765 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2     0.015       7.9       1      23 [.     320     342 ..     320     349 .. 0.87
   2 ?    3.8   0.1     0.091        47       1      23 [.     956     978 ..     956     984 .. 0.91
   3 ?   -2.0   0.0       5.9     3e+03       1      24 [.    1242    1265 ..    1242    1270 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.015
                 EEEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlell 23 
                 ++++ G+ G+GKtTl++ ++  l
  KIR65279.1 320 HLLVVGRAGTGKTTLLRTIVGGL 342
                 67899***********9998765 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.091
                 EEEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlell 23 
                 +v++ G p +GK+Tlv  v+ +l
  KIR65279.1 956 HVAVVGAPLTGKSTLVLTVVAAL 978
                 78999**************9988 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 5.9
                  EEEEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1    1 kvfiTGppGvGKtTlvkkvlellk 24  
                  ++++ G    GKt l++ v+++++
  KIR65279.1 1242 HLVVFGDAECGKTNLLRLVARQVA 1265
                  577889999*********999876 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0055       2.8      21      50 ..     317     346 ..     310     359 .. 0.75
   2 ?   -2.3   0.4       4.7   2.4e+03      23      43 ..     637     656 ..     633     665 .. 0.76
   3 ?    5.3   0.0     0.021        11      13      46 ..     946     978 ..     939     988 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0055
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakrlpsllppls 50 
                    + +ll+vG +G+GKt l + + + l+  +
    KIR65279.1 317 SEGHLLVVGRAGTGKTTLLRTIVGGLALTH 346
                   445799************999987666544 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.7
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlp 43 
                   H  +lvG+p sGK  l ++l 
    KIR65279.1 637 HG-VLVGAPASGKGELLRALV 656
                   55.579*******99888775 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.021
  Mg_chelatase  13 raleiaaaGgHnlllvGppGsGKtmlakrlpsll 46 
                    ++e+a aGgH + +vG+p +GK+ l   + + l
    KIR65279.1 946 LTVELAGAGGH-VAVVGAPLTGKSTLVLTVVAAL 978
                   5689999**99.6789********9987766655 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0064       3.3       2      23 ..     321     342 ..     320     353 .. 0.83
   2 ?   -1.4   0.0       3.9     2e+03       4      26 ..     640     662 ..     639     666 .. 0.88
   3 ?   -0.7   0.1       2.5   1.3e+03       2      24 ..     957     979 ..     956     982 .. 0.88
   4 ?    0.5   0.0      0.99   5.1e+02       2      26 ..    1243    1267 ..    1242    1269 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0064
        MobB   2 lgivgksgsGKTtLleklipel 23 
                 l +vg+ g+GKTtLl  ++  l
  KIR65279.1 321 LLVVGRAGTGKTTLLRTIVGGL 342
                 6799************999765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.9
        MobB   4 ivgksgsGKTtLleklipelkar 26 
                 +vg   sGK  Ll  l+  l+ar
  KIR65279.1 640 LVGAPASGKGELLRALVLGLAAR 662
                 789999**********9988876 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.5
        MobB   2 lgivgksgsGKTtLleklipelk 24 
                 +++vg   +GK tL+  ++++l+
  KIR65279.1 957 VAVVGAPLTGKSTLVLTVVAALA 979
                 6799999*********9999885 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.99
        MobB    2 lgivgksgsGKTtLleklipelkar 26  
                  l + g  ++GKT Ll  + ++++ar
  KIR65279.1 1243 LVVFGDAECGKTNLLRLVARQVAAR 1267
                  5678999********9887777665 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.19        97      37      53 ..     320     336 ..     315     349 .. 0.90
   2 ?   -0.5   0.0       1.4   7.1e+02     115     162 ..     744     790 ..     727     809 .. 0.73
   3 ?   -3.1   0.0       8.5   4.4e+03      38      52 ..     957     971 ..     956     974 .. 0.89
   4 ?    3.7   0.0      0.07        36      36      65 ..    1241    1270 ..    1234    1279 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.19
        TniB  37 nlllvGdsnnGKtmive 53 
                 +ll+vG+  +GKt++++
  KIR65279.1 320 HLLVVGRAGTGKTTLLR 336
                 69************987 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.4
        TniB 115 lrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvGt 162
                 l el v +++ DE+ +ll+ +  +  e+++ + + g+ l + + l+G 
  KIR65279.1 744 LVELPVLLVVCDEFADLLTVQP-DLGELFARIGRVGRALGVHLLLAGQ 790
                 5567777888899999986654.4566777777777777777777776 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 8.5
        TniB  38 lllvGdsnnGKtmiv 52 
                 + +vG + +GK+++v
  KIR65279.1 957 VAVVGAPLTGKSTLV 971
                 689*********997 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.07
        TniB   36 pnlllvGdsnnGKtmivekFarlhppekde 65  
                  p+l+++Gd ++GKt +++  ar+  +++++
  KIR65279.1 1241 PHLVVFGDAECGKTNLLRLVARQVAARHSP 1270
                  899*************99888777666554 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0067       3.4       3      25 ..     320     342 ..     318     363 .. 0.77
   2 ?    1.3   0.0      0.51   2.6e+02       4      21 ..    1243    1260 ..    1241    1266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0067
   PduV-EutP   3 killiGkvgsGKttLtqalkgee 25 
                 ++l++G+ g+GKttL +++ g  
  KIR65279.1 320 HLLVVGRAGTGKTTLLRTIVGGL 342
                 5799***********99987744 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.51
   PduV-EutP    4 illiGkvgsGKttLtqal 21  
                  ++++G  ++GKt L + +
  KIR65279.1 1243 LVVFGDAECGKTNLLRLV 1260
                  6789*********98755 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.41   2.1e+02      19      37 ..     321     339 ..     319     349 .. 0.86
   2 ?    5.9   0.0     0.014       7.1      20      49 ..     639     668 ..     625     670 .. 0.85
   3 ?   -1.1   0.0       1.9   9.7e+02      23      43 ..    1247    1267 ..    1237    1283 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.41
  Zeta_toxin  19 illgGqpGAGKselaellk 37 
                 +l++G  G GK++l++ + 
  KIR65279.1 321 LLVVGRAGTGKTTLLRTIV 339
                 5899**********99876 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.014
  Zeta_toxin  20 llgGqpGAGKselaellkdelerqgnvvrl 49 
                 +l+G+p++GK+el+++l   l+++ +v r+
  KIR65279.1 639 VLVGAPASGKGELLRALVLGLAARHSVARF 668
                 689*************99888877777766 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.9
  Zeta_toxin   23 GqpGAGKselaellkdelerq 43  
                  G   +GK++l++l++++++++
  KIR65279.1 1247 GDAECGKTNLLRLVARQVAAR 1267
                  56669*********9998744 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0075       3.9      13      36 ..     316     339 ..     309     348 .. 0.86
   2 ?   -0.3   0.0      0.76   3.9e+02      17      53 ..     637     677 ..     631     681 .. 0.81
   3 ?   -1.7   0.0         2     1e+03      16      50 ..    1241    1279 ..    1236    1284 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0075
  TrwB_AAD_bind  13 retqhilivGttGsGKtqalekll 36 
                    + + h+l+vG +G+GKt+ l+ ++
     KIR65279.1 316 SSEGHLLVVGRAGTGKTTLLRTIV 339
                    5678****************9886 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.76
  TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairarg....draivlDltG 53 
                    h ++vG+  sGK + l++l+ ++ ar       ++ +D++G
     KIR65279.1 637 HGVLVGAPASGKGELLRALVLGLAARHsvarFNVLLMDFKG 677
                    8899****************999999855444567777777 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2
  TrwB_AAD_bind   16 qhilivGttGsGKtqalekllrairarg....draivlD 50  
                      h++++G +  GKt+ l+   r++ ar      r + +D
     KIR65279.1 1241 PHLVVFGDAECGKTNLLRLVARQVAARHspaeARLVLAD 1279
                     599999*****************9999855545555555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2     0.004         2       4      22 ..     322     344 ..     320     353 .. 0.77
   2 ?    1.1   0.0      0.51   2.6e+02       4      36 ..     639     675 ..     636     678 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.004
                 EEEESTTCCHHHHHHHHH....C CS
        cobW   4 vltGflGsGKTtLlnhll....e 22 
                 +++G  G+GKTtLl++++     
  KIR65279.1 322 LVVGRAGTGKTTLLRTIVgglaL 344
                 689*************9855542 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.51
                 EEEESTTCCHHHHHHHHH....CT--SS-EEEEESS- CS
        cobW   4 vltGflGsGKTtLlnhll....enraglklavivNef 36 
                 vl+G + sGK  Ll++l+    ++++  +  v++ +f
  KIR65279.1 639 VLVGAPASGKGELLRALVlglaARHSVARFNVLLMDF 675
                 899*************998775555556666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 1.02u 0.30s 00:00:01.32 Elapsed: 00:00:00.49
# Mc/sec: 8921.61
//
Query:       KIR65280.1  [L=243]
Description: Clp protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-26   91.9   3.8    3.2e-12   46.4   0.2    2.6  2  Clp_N          Clp amino terminal domain, pathogenicity islan
  ------ inclusion threshold ------
      0.065   13.1   0.2       0.18   11.7   0.2    1.8  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.2   3.5e-16   3.2e-12       1      50 [.     111     160 ..     110     163 .. 0.96
   2 !   46.2   0.5   3.9e-16   3.5e-12       2      51 ..     187     234 ..     186     236 .. 0.94

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 3.5e-16
                 HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHH CS
       Clp_N   1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiek 50 
                 +qe+A+++g+++i++ H+ l+Ll+e++Glaa l+++ Gv l+++r+a+ +
  KIR65280.1 111 SQEEARAAGNAEITPGHVVLGLLAEPEGLAAALIAARGVPLERVREAVTA 160
                 49*********************************************976 PP

  == domain 2  score: 46.2 bits;  conditional E-value: 3.9e-16
                 HHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHH CS
       Clp_N   2 qelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekl 51 
                 +++A+++gh+y++tEH+LlALlee++G++  +L  +G+ +da ++a+e +
  KIR65280.1 187 FREALRMGHNYVGTEHILLALLEEEGGDG--VLGGLGLKKDAMESAVEGA 234
                 579**************************..***************9965 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2     2e-05      0.18      18      37 ..      61      80 ..      54      83 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2e-05
  HTH_AsnC-type 18 isyaeLAervGlSestvlrR 37
                   +s++e+++  G+S +++++R
     KIR65280.1 61 ASWTEIGRSMGVSKQAAQKR 80
                   89****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1747.79
//
Query:       KIR65281.1  [L=172]
Description: hypothetical protein TK50_07415 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1275.37
//
Query:       KIR65282.1  [L=461]
Description: phosphomannomutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-30  104.2   0.0    7.9e-30  103.4   0.0    1.4  1  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
    4.2e-25   88.3   0.0    1.2e-24   86.9   0.0    1.8  1  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
    4.2e-24   84.9   0.0    7.9e-24   84.1   0.0    1.5  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
    9.1e-16   57.8   0.3    8.2e-15   54.7   0.1    2.4  2  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   1.8e-33   7.9e-30       3     132 ..       7     136 ..       5     140 .. 0.94

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 1.8e-33
                 GBBTTCEEEECCHCTBSCCHHHHHHHHHHHHCHHC.STS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEEEB-HHHHHHHHHHCCECEEEEE--T CS
   PGM_PMM_I   3 kfgtsGlRgkvgegeltpelveklgqaiaeylkae.akkkkvvvGrDtRvssrelaealaaglaanGvevillgllptPavsfairklkadagimitaS 100
                 + +++++Rg v+ +++++ ++e+lg+a++++l+a  + +  vv+++D+R+s++ laea+aag+ a+G +vi lgl++t+++++a  +l++ +  m+taS
  KIR65282.1   7 IVKAYDVRGTVP-DQWDERVAEALGAAFGQVLAAAgEPGDAVVIAHDMRASGPGLAEAFAAGVRAEGRSVIELGLASTDMLYYASGTLGLPG-AMFTAS 103
                 6789********.88********************9****************************************************9887.9***** PP

                 TS-TTCCCEEEEETTTCE--CHH.HHHHHHHHC CS
   PGM_PMM_I 101 HnppeyngiKvylsnGgpispev.eekIeaiie 132
                 Hnp++yngiK++ +   pi ++   ++I+++++
  KIR65282.1 104 HNPAQYNGIKMCRAGARPIGQDSgLAEIRDRAQ 136
                 *******************99987788887776 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.0   2.6e-28   1.2e-24       2     103 .]     162     266 ..     161     266 .. 0.96

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 2.6e-28
                 HHHHHGGGTS-HHHHHHHT-EEEEE-TT-TTHHHHHHHHHHTT-.....EEEES-----TT-TTSS----TT-TTTTHHHHGGGGG-SEEEEE-TTS-B CS
  PGM_PMM_II   2 aYiealkekvdseaikksglkvvidplhGaggeilkellkelgv.....dvvelnaepdpdfptkapnpeekealkllielvkkegadlglafDgDaDR 95 
                 +Y  +l++ vd + i  ++lkvv+d+++G gg +++++l+++ +     ++v+l +e d++fp++ +np ++++l +l+++v+++gadlglafDgDaDR
  KIR65282.1 162 EYAAHLRKLVDLSGI--RPLKVVVDAGNGMGGWTVPSVLGDAVLpalplEIVPLYFELDGTFPNHEANPLDPANLVDLQRAVREHGADLGLAFDGDADR 258
                 799********7777..778*********************99999***************************************************** PP

                 EEEEETTE CS
  PGM_PMM_II  96 lgvvderG 103
                 ++vvderG
  KIR65282.1 259 CFVVDERG 266
                 ******98 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0   1.8e-27   7.9e-24       5     114 .]     274     380 ..     270     380 .. 0.89

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 1.8e-27
                  HHHHHHHHHHCHCSTTTCEEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHTTECEEEETTCEEEETTTBSS--HHHHHHHHHHHHHHHTS- CS
  PGM_PMM_III   5 llallakylleeklkpgagvvktvmtslalervakklgiklvetkvGdkyvleemkeegavlGgEeSghiifldeattkDGilaallvleilaetgks 102
                  + al+a + l+  ++pg +v+++  ts+a+ ++++++g++ v t+vG++++++em +++av+GgE+S+h++f+++   + G+laa+++l++l  +  +
   KIR65282.1 274 ITALVAVRELA--KHPGSTVIHNPITSRAVPEIIREHGGEPVVTRVGHSFIKAEMARTNAVFGGEHSAHYYFREFWFADTGMLAAMHALAALGGQALP 369
                  55566655555..356667******************************************************************************* PP

                  HHHHHHHHHHHH CS
  PGM_PMM_III 103 lselleellkky 114
                  lsel+ + +++y
   KIR65282.1 370 LSELA-REYERY 380
                  ****9.557776 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.21   9.3e+02      14      45 ..      23      57 ..      13      59 .. 0.55
   2 !   54.7   0.1   1.8e-18   8.2e-15       1      73 [.     385     459 ..     385     460 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.21
                EECCCCCTTHHCCCCCCCCG..CCEEEE...EEEET CS
  PGM_PMM_IV 14 aalaallkvasikeglkill..edGrrla..vRpSG 45
                +++a++l++  + ++l+  +  +d++++a  +R+SG
  KIR65282.1 23 ERVAEALGA-AFGQVLAAAGepGDAVVIAhdMRASG 57
                555555555.34444444440045555559999998 PP

  == domain 2  score: 54.7 bits;  conditional E-value: 1.8e-18
                 CCCCCHCC-TT..EECCCCCTTH..HCCCCCCCCGCCEEEE.EEEETTCCEEEEEEEESSHHHHHHHHHHHHHHH CS
  PGM_PMM_IV   1 linvrveekakvvaalaallkva..sikeglkilledGrrlavRpSGTepllrvyvEaksdeelarlaeevaell 73 
                 +in+ v+++a+ +a+++a++  a  ++ +gl   + dG ++++R+S+Tepllr++vEa+++e++  l++ev++ +
  KIR65282.1 385 EINSTVADQAASIAQVRAAYPQAavDELDGLTLSFPDGAWFNLRASNTEPLLRLNVEAPTEERMISLRDEVLDRV 459
                 8*******98878888888877789**********************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3341.88
//
Query:       KIR65283.1  [L=61]
Description: tetraacyldisaccharide 4'-kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-09   35.9   0.5    4.8e-08   33.5   0.5    1.9  1  Trm112p       Trm112p-like protein
    0.00081   18.9   0.1     0.0015   18.0   0.1    1.5  2  TF_Zn_Ribbon  TFIIB zinc-binding
  ------ inclusion threshold ------
      0.017   15.3   0.9      0.083   13.1   0.8    2.3  2  zf-RING_7     C4-type zinc ribbon domain
      0.069   12.7   0.0       0.11   12.1   0.0    1.3  1  zf-C2H2_12    Zinc-finger C2H2-type
      0.077   13.1   1.2       0.24   11.5   0.2    2.0  2  Zn-ribbon_8   Zinc ribbon domain


Domain annotation for each model (and alignments):
>> Trm112p  Trm112p-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.5   1.3e-11   4.8e-08       1      67 [.       4      43 ..       4      44 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 1.3e-11
                BTGGCCC-B-TTTHH.C--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEET CS
     Trm112p  1 kllllniLaCpackg.pLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkd 67
                ++ ll+iLaCp +++ pL                        +    +d   ++L+C++cgr++ ++d
  KIR65283.1  4 DPQLLEILACPDTHHaPL------------------------D----YDAGAQTLTCTECGRIFEVRD 43
                678********8888***........................6....9*******************9 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   4.3e-07    0.0015       2      32 ..      12      42 ..      11      46 .. 0.90
   2 ?   -1.7   0.0      0.62   2.2e+03      11      18 ..      48      55 ..      42      56 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.3e-07
                  EETTTTCEECHEETSTTCEEESSSSBEEEEC CS
  TF_Zn_Ribbon  2 kCPnCgstnlveDpergelvCtdCGlVledn 32
                   CP+ ++  l +D+   +l+Ct+CG + e +
    KIR65283.1 12 ACPDTHHAPLDYDAGAQTLTCTECGRIFEVR 42
                  5999999999***************999876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.62
                  CHEETSTT CS
  TF_Zn_Ribbon 11 lveDperg 18
                  l++D++rg
    KIR65283.1 48 LLLDEARG 55
                  68899998 PP

>> zf-RING_7  C4-type zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.8   2.3e-05     0.083      18      32 ..      24      38 ..       1      39 [. 0.70
   2 ?   -3.3   0.0         3   1.1e+04      10      20 ..      46      56 ..      45      57 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.3e-05
                CCSTB-EE-TTT--E CS
   zf-RING_7 18 ragdevvtCpeCGRI 32
                +ag +  tC eCGRI
  KIR65283.1 24 DAGAQTLTCTECGRI 38
                5667889*******9 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3
                -CCHHHHHCCS CS
   zf-RING_7 10 ppqvlselrag 20
                p  +l e r+g
  KIR65283.1 46 PVLLLDEARGG 56
                66677787765 PP

>> zf-C2H2_12  Zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.1e-05      0.11      14      31 ..      21      38 ..      20      42 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.1e-05
  zf-C2H2_12 14 mdydpqrrglvCmvCges 31
                +dyd+ +++l C  Cg+ 
  KIR65283.1 21 LDYDAGAQTLTCTECGRI 38
                69*************986 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.15   5.5e+02      28      34 ..      12      18 ..       2      23 .. 0.74
   2 ?   11.5   0.2   6.8e-05      0.24       7      18 ..      31      42 ..      22      48 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.15
  Zn-ribbon_8 28 aCPeCgs 34
                 aCP+ ++
   KIR65283.1 12 ACPDTHH 18
                 4999887 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6.8e-05
  Zn-ribbon_8  7 rCeeCghefevl 18
                  C+eCg+ fev+
   KIR65283.1 31 TCTECGRIFEVR 42
                 5*********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 445.49
//
Query:       KIR65284.1  [L=398]
Description: mannose-6-phosphate isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-46  156.4   0.0    1.1e-45  155.4   0.0    1.5  1  bact-PGI_C  Bacterial phospho-glucose isomerase C-terminal SI
      6e-06   26.1   0.0     0.0014   18.5   0.0    2.5  2  SIS         SIS domain
    4.4e-05   23.5   0.5    0.00016   21.7   0.2    2.1  2  SIS_2       SIS domain


Domain annotation for each model (and alignments):
>> bact-PGI_C  Bacterial phospho-glucose isomerase C-terminal SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.4   0.0   1.8e-49   1.1e-45       1     150 [.     218     394 ..     218     395 .. 0.96

  Alignments for each domain:
  == domain 1  score: 155.4 bits;  conditional E-value: 1.8e-49
                 GG-HHHHHHHHHTTSEEEEE-..TT-THHHHHHHHHHHHTT----B---.SSHHHHHHHTT...................SS-GGGGTTEEEEEESSHH CS
  bact-PGI_C   1 eknpakqlAlelagklpviygssellevaArRfknqlnenAKipafagvlpeanhneivgl...................eaeeelkkrlrlvllrdee 80 
                 ++npak+lAl lag++p+++gss+l++vaArRf ++l++nA++p+++g+l ea++ ++ +l                   e ++  ++rlrlvllrd+ 
  KIR65284.1 218 FVNPAKSLALGLAGSVPIVWGSSPLATVAARRFGDTLSANARYPVVSGALGEAGRGRVGLLdgvfgglaegerdifadpgE-SDGDGTRLRLVLLRDGG 315
                 68*****************************************************************************54.6788**********999 PP

                 .................HHHHHHHHTTTSSEEEEE---SSSHHHHHHHHHHHHHHHHHHHHHHCT---S-TTTTHHHHH CS
  bact-PGI_C  81 eh.........prvkkraeivkelaeergvrvtevkaegesplerlaslillgDfvSvylAllrgvDPtpvpaIdelKe 150
                  +          ++++ra++v++lae+rgvr++ v+aeg+s+lerlasl+++ Df+SvylAl++g+DP++vpaI+e+Ke
  KIR65284.1 316 LNaeddadeplAVEERRADAVQTLAERRGVRCDVVTAEGGSALERLASLVAVPDFASVYLALAHGLDPMAVPAITEMKE 394
                 4446789999999*****************************************************************8 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.3e-07    0.0014      49      93 ..     105     148 ..      64     183 .. 0.76
   2 !    5.1   0.0    0.0033        20      71     100 ..     334     364 ..     329     378 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.3e-07
                 GG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSH CS
         SIS  49 alideddlvilisfsgetkdlvaaaelakergakiiaITdskgsp 93 
                 + +  +d+vi++s sg++++ + aae a++rga+++a+   ++s+
  KIR65284.1 105 GWVGAADVVIAVSASGRSPEALGAAEAAHRRGARLVAVG-APDSQ 148
                 568899*****************************8874.33333 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0033
                 HHHH.HHHHTTSEEEEEESSTTSHHHHHSSE CS
         SIS  71 aaae.lakergakiiaITdskgsplareadl 100
                 +a++ la +rg+++ ++T + gs+l r a+l
  KIR65284.1 334 DAVQtLAERRGVRCDVVTAEGGSALERLASL 364
                 5778899********************9944 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.57   3.4e+03      89     120 ..      38      69 ..      11      82 .. 0.72
   2 !   21.7   0.2   2.7e-08   0.00016     103     136 ..     109     142 ..     106     144 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.57
                 TTHHHHHHHHTT--TT-EEEEE-SS--SHHHH CS
       SIS_2  89 egyakqilrlvrlkpgDvLlviSnsGnnavvv 120
                 +  + q+++++ l+++  L v+ + G+  +vv
  KIR65284.1  38 ASAGAQVRESAALAAEANLTVLADEGRPRAVV 69 
                 55667777888888888888888888875544 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 2.7e-08
                 TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEE CS
       SIS_2 103 pgDvLlviSnsGnnavvveaaeaakergmkviAl 136
                 + Dv + +S+sG+++ ++ aaeaa++rg++++A+
  KIR65284.1 109 AADVVIAVSASGRSPEALGAAEAAHRRGARLVAV 142
                 57*******************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2610.39
//
Query:       KIR65285.1  [L=341]
Description: cation diffusion facilitator family transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-32  112.0   8.4    3.7e-32  111.7   8.4    1.1  1  Cation_efflux   Cation efflux family
    0.00024   21.2   0.1    0.00036   20.6   0.1    1.3  1  ZT_dimer        Dimerisation domain of Zinc Transporter
  ------ inclusion threshold ------
       0.23   11.7  12.5          1    9.6   1.4    2.7  2  TctB            Tripartite tricarboxylate transporter TctB fa
       0.61   10.1   2.4        2.4    8.2   0.3    2.2  2  Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis 
       0.85    9.3   5.2       0.16   11.6   0.2    2.1  3  DUF4131         Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   8.4     1e-35   3.7e-32       2     199 .]      11     219 ..      10     219 .. 0.90

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 1e-35
  Cation_efflux   2 ilsllanlilalvelivglltnSlalladafhslsdlvsllllllalklsrkppderfpfGygrlevlgalvsgl.lllglavfllleaiqklike 96 
                    +++llan+++a+ ++i+ llt+S+++la+++hs++d  ++ llll+ k +r++++ ++pfGygr  +++a+++++ l+ ++++f+l+ea +k+ ++
     KIR65285.1  11 VAALLANVGIAVTKFIAFLLTGSSSMLAESIHSVADSGNQGLLLLGGKRARREATPQHPFGYGRERYVYAFIVAIvLFSLGGLFALYEAWHKAADP 106
                    789************************************************************************66677788***********88 PP

  Cation_efflux  97 gereihaglalvvalvslvvnlalllilrragrkl.............rsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvaslli 179
                    ++ e   ++ +vv+++++v++ ++++  + +++ +             + + l +++l+ +g +++ + +l+++  +l++   ++ + D++++ +i
     KIR65285.1 107 HPIESWQWVPVVVLVAAIVMESFSFRTAIVESNLIrgnqswvrfirrsKAPELPVVLLEDFGALVGLVFALFGVGMTLIT---GNGMWDAAGTAMI 199
                    88888899999999999999999999888888777************************666666666666666666665...5579********* PP

  Cation_efflux 180 gliilysalkllkeslseLl 199
                    g+++++ a+ l+ e+ s Ll
     KIR65285.1 200 GVLLVVIAVTLAIETKSLLL 219
                    **************998886 PP

>> ZT_dimer  Dimerisation domain of Zinc Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1     1e-07   0.00036       4      78 ..     226     299 ..     223     300 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1e-07
                 .HHHHHHHHHTT-SS-EEEEEEEEE-S-.---EEEEEEEE-TTS-HHHHHHHHHHHHHHHHHH-TT--EEEEEEEE CS
    ZT_dimer   4 eeeeeireiiksvpgvkgvhdlrtrksG.skifvdlhievdgdlsvkeaHeiadevekrikeefpgvadvliHveP 78 
                  +++ i++++++ p+v+++ +++t + G ++++v  +i v+   s +e  + +++ve+ri++++ +va+ +i +eP
  KIR65285.1 226 TDVATIERAVTDGPEVERIIHMKTLYLGpEELLVAAKIAVPACESAEELARGINAVEARIRAAV-PVAR-VIYLEP 299
                 56899***********************66**********************************.5565.777777 PP

>> TctB  Tripartite tricarboxylate transporter TctB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   4.0    0.0031        11      24      94 ..      68     136 ..       9     152 .. 0.57
   2 ?    9.6   1.4   0.00029         1       2      49 ..     170     223 ..     167     252 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0031
        TctB  24 arvgpg....ffPlllgvllallgllllv...aadgekeekearedwrkllklvlallaalllyallleplGfilata 94 
                 +++g g    ++ ++++++l+ lg l+++          +k+a  +  +++++v +   ++l+ a+++e + f  a++
  KIR65285.1  68 HPFGYGreryVYAFIVAIVLFSLGGLFALyeaW------HKAADPHPIESWQWVPV---VVLVAAIVMESFSFRTAIV 136
                 333333666667899999999999888883321......33333334444445555...5566666666666655555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00029
        TctB   2 iagllllllagvafavgald.tgarvgpgffPlllgvllallgllllv..........a 49 
                 ++gl+++l+ gv    g++  tg+++  ++   ++gvll+++++ l++          a
  KIR65285.1 170 LVGLVFALF-GV----GMTLiTGNGMWDAAGTAMIGVLLVVIAVTLAIetkslllgegA 223
                 456666666.43....344467788888888899********99999977777666542 PP

>> Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.068   2.4e+02       4      65 ..      13      79 ..      10      90 .. 0.73
   2 ?    8.2   0.3   0.00066       2.4       4      73 ..     169     238 ..     167     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.068
  Halogen_Hydrol  4 wllsiliavivalvsffllgfsffla...llia....ilggilvyvasrknkkkkhlkksglsrkelky 65
                    +ll+ ++++++ +++f+l+g s++la      +       g+l+  ++r +++ +   + g+ r+ + y
      KIR65285.1 13 ALLANVGIAVTKFIAFLLTGSSSMLAesiH--SvadsGNQGLLLLGGKRARREATPQHPFGYGRERYVY 79
                    556666677778899999999999995432..1335566777777777877777777778888888876 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00066
  Halogen_Hydrol   4 wllsiliavivalvsffllgfsfflalliailggilvyvasr.knkkkkhlkksglsrkelkyiretlkea 73 
                     +l++ ++a ++++ + +++g  ++ a+++a++g +lv +a+   ++ k++l  +g++ +++  i++++ ++
      KIR65285.1 169 ALVGLVFA-LFGVGMTLITGNGMWDAAGTAMIGVLLVVIAVTlAIETKSLLLGEGAEATDVATIERAVTDG 238
                     44444444.45666666789999999999977777777776658899999999*********999998765 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   4.6e-05      0.16      26      73 ..      61     122 ..      12     134 .. 0.81
   2 ?    0.2   0.7      0.14   5.2e+02       6      48 ..     112     183 ..     108     189 .. 0.53
   3 ?   -1.2   0.7      0.38   1.3e+03      38      48 ..     173     183 ..     163     218 .. 0.43

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.6e-05
     DUF4131  26 r............rprrrvllllllllllallgfalrapqpnandlsqlles..gqeviveG 73 
                 r            r r+ ++++++++l+ +++ fal+ +++ a d +++ ++     v++++
  KIR65285.1  61 RreatpqhpfgygRERYVYAFIVAIVLFSLGGLFALYEAWHKAADPHPIESWqwVPVVVLVA 122
                 1466677777777999999*************************999999866544444444 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.14
     DUF4131   6 alvllalllllllll.llllrr..................rprrrv.............llllllllllallgfa 48 
                 + ++ +++l+++++   + +r                   r   r               +l++l+++l+++g++
  KIR65285.1 112 WQWVPVVVLVAAIVMeSFSFRTaivesnlirgnqswvrfiR---RSkapelpvvlledfGALVGLVFALFGVGMT 183
                 44444444444444413333336667777766655553331...2244566666666666677777777777665 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.38
     DUF4131  38 lllllallgfa 48 
                 l+++l+++g++
  KIR65285.1 173 LVFALFGVGMT 183
                 22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2582.24
//
Query:       KIR65286.1  [L=392]
Description: mannose-6-phosphate isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-60  204.0   0.0    2.5e-34  119.1   0.0    2.1  2  PMI_typeI  Phosphomannose isomerase type I
  ------ inclusion threshold ------
      0.083   12.6   0.2        1.8    8.3   0.0    2.8  3  Cupin_2    Cupin domain


Domain annotation for each model (and alignments):
>> PMI_typeI  Phosphomannose isomerase type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.0   2.8e-38   2.5e-34       4     142 ..       4     146 ..       1     161 [. 0.89
   2 !   82.9   0.0   2.7e-27   2.4e-23     228     365 ..     208     342 ..     190     348 .. 0.83

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 2.8e-38
                 EEEEEEE-TTBEECGGSHHHHHHHHH-TT..TTSCEEEEEEC--TTS-EECTTTC....CCCHCHHHHHHHTGHHHCCHHTSS-SEEEEEEEESS---E CS
   PMI_typeI   4 LqcgvqnyaWGkiGsesalakllaasdPsieedkpyaElWmgtHpkgpskvlnkk....lkdvvlkellaelresvgkkfgeelpfLfKvLsvekvlSi 98 
                 L+  +++yaWG   s+sa+a l + s Ps     p aElW+g+Hp  p+ v+       l dv  +e+   l+e    +fg +lpfL KvL + ++lS+
  KIR65286.1   4 LHGPIRDYAWG---SRSAIAGLQGRSVPS---PGPEAELWLGAHPGAPASVQRDGepvsLLDVLAAEPGRWLGERSVRRFGPRLPFLLKVLAADTPLSL 96 
                 6677899****...9**************...9***************99876555899**************************************** PP

                 EE---HHHHHHHHHH.......TCCCHCCCTTTEEEEESS.EEEEEEE.. CS
   PMI_typeI  99 qvHPdKklaeilhaad......pknYpddNhkpElaiAltdFeglcgfrp 142
                 q+HPd ++a++ +aad      ++nY+d+ hkpEl +Alt+F +lcgfr+
  KIR65286.1  97 QAHPDAEQARAGYAADaarpvgERNYADPHHKPELLVALTPFSALCGFRD 146
                 *********996666544444489************************96 PP

  == domain 2  score: 82.9 bits;  conditional E-value: 2.7e-27
                 HHHCCHCHHHSTTTTCHCH.TTEEEEEE.TT.EECCHCCHHCECCEEEEEEEEES-EEEEECCCECCEEECHCCHCH.EEEEEECCCCEE--BSCEECE CS
   PMI_typeI 228 aelidrlneqyPddiGlfa.llLNlvkLnpGEAmflkandphaylsGdivecmaasdnvvRaGlTpKfidvkelvemltYkykpsdelklqqtesllda 325
                 a l + l   yP+d G+ + llL +v+L pGEA+ + a + hayl+G  ve maasdnv+R GlTpK +dv+el+  l +  +  +  ++ +++ +   
  KIR65286.1 208 AALAHALAAHYPGDPGVLVaLLLHHVRLAPGEAIWMPAGNLHAYLRGTGVEIMAASDNVLRGGLTPKRVDVDELLRVLRF--EVLGDPLVTPEQ-VAP- 302
                 5677889999******************************************************************9999..888888888877.444. PP

                 EEEEEE.CCCCECCEEECCCTTEEEEE-TTS-EEEEEEECE CS
   PMI_typeI 326 svlydp.pieefavektklkkgeatilplesasiliaveGt 365
                  v+  p p+++fa+ +  + +g  + l++ ++ ++++  G+
  KIR65286.1 303 GVVRWPvPVDDFALYRAVV-AGAPVRLAVPGPRVVLCRAGK 342
                 58888889***99987655.444555566677777776665 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0002       1.8      38      61 ..     232     256 ..     226     262 .. 0.84
   2 ?    0.5   0.0     0.057   5.1e+02      27      52 ..     340     365 ..     331     368 .. 0.74
   3 ?   -0.5   0.0      0.12   1.1e+03      23      32 ..     368     377 ..     350     383 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0002
                 EEEEETTEEEEE-TT-EEEE.EE-S CS
     Cupin_2  38 eveleaGdsvyfpagtpHrf.rNtg 61 
                  v+l +G+++  pag  H++ r tg
  KIR65286.1 232 HVRLAPGEAIWMPAGNLHAYlRGTG 256
                 689***************9955555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.057
                 ESEEEEEECTEEEEEETTEEEEE-TT CS
     Cupin_2  27 eGegeltvdgeeveleaGdsvyfpag 52 
                  G++    +   v+l +G++++ pa 
  KIR65286.1 340 AGKVSADDGTGAVTLAPGQAAIGPAD 365
                 55666665666899999999999885 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.12
                 EEEEESEEEE CS
     Cupin_2  23 fyVleGegel 32 
                   Vl+Gege 
  KIR65286.1 368 PLVLDGEGEA 377
                 3577777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2565.25
//
Query:       KIR65287.1  [L=499]
Description: adenosylhomocysteinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-151  503.8   0.0   1.5e-151  503.6   0.0    1.0  1  AdoHcyase      S-adenosyl-L-homocysteine hydrolase
    6.1e-83  276.7   2.3    8.6e-83  276.2   2.3    1.2  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
    2.3e-07   30.3   0.1      4e-07   29.6   0.1    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    3.1e-06   26.8   0.2    5.1e-06   26.2   0.2    1.3  1  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind
    0.00023   21.2   0.0    0.00047   20.2   0.0    1.5  1  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
     0.0037   17.5   0.1     0.0083   16.4   0.1    1.6  1  TrkA_N         TrkA-N domain
     0.0047   16.3   1.0      0.019   14.3   1.0    1.9  1  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
  ------ inclusion threshold ------
      0.017   15.7   0.1      0.041   14.5   0.1    1.7  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
      0.026   15.0   0.1      0.058   13.8   0.1    1.6  1  NAD_binding_7  Putative NAD(P)-binding
       0.12   11.6   1.4       0.29   10.4   1.4    1.6  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
       0.15   11.9   0.3       0.43   10.4   0.4    1.7  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d


Domain annotation for each model (and alignments):
>> AdoHcyase  S-adenosyl-L-homocysteine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  503.6   0.0  9.4e-155  1.5e-151       1     299 []      25     498 ..      25     498 .. 0.98

  Alignments for each domain:
  == domain 1  score: 503.6 bits;  conditional E-value: 9.4e-155
                 --B-S-GGGHHHHHHHHHHHHCC-HHHHHHHHHCTTT-TTTT-EEEEES--SHHHHHHHHHHHHTT-EEEEE-SSTTT--HHHHHHHC.........CT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xx RF
   AdoHcyase   1 dykvkdislaefGrkeielaekempglmalreeyaeekplkgariaGslhmtiqtavLietLvalGaevrWasCnifstqdeaaaaia.........ea 90 
                 dykv+d+slaefGrkei+lae+empglma+r+e+a+++pl+gari+GslhmtiqtavLietLvalGa+vrWasCnifstqd+aaaai+          a
  KIR65287.1  25 DYKVADLSLAEFGRKEIQLAEHEMPGLMAIRREFAQAQPLAGARITGSLHMTIQTAVLIETLVALGAQVRWASCNIFSTQDHAAAAIVvgpdgtpdaPA 123
                 8**********************************************************************************************8666 PP

                 TEEEE--TT--HHHHHHHHHHCHS-SSTS-S-SEEEESSSHHHHHHHHHHHHH.H.......S..SHHHHHHHHHHHHHHTT..THHCCCHCC--EEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
   AdoHcyase  91 gvpvfawkgetleeywwcieqalkwaedekepnlilDdGGDltllvhkgvkee.e.svle.keedeeeekvvlellkksleed.kkytellkkikGvse 185
                 gvpv+awkge+l+eywwc+e++l+w+ d+++pn+ilDdGGD+tllvhkgv++e +  v+  +++d+ee++v+le+l++sl++d +++t++++ ikGv+e
  KIR65287.1 124 GVPVYAWKGESLQEYWWCTERVLDWP-DGQGPNMILDDGGDATLLVHKGVEFEkSgVVPPvESADSEEYAVILEVLHRSLASDgQRWTRIAAGIKGVTE 221
                 ***********************997.777*********************87455555568899*****************99*************** PP

                 -SHHHHHHHHHHHHTT---SEEEESTTSHHHCTTH................................................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................................ RF
   AdoHcyase 186 etttGvhrLyelakkgkLlvpainvndsvtkskfD................................................................ 220
                 etttGvhrLye++++g+Ll+painvndsvtkskfD                                                                
  KIR65287.1 222 ETTTGVHRLYEMHRAGTLLFPAINVNDSVTKSKFDnkygcrhslidginratdvliggkmavvlgygdvgkgcaeslrgqgarvvvtevdpicalqaam 320
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
   AdoHcyase 221 ................................................................................................... 220
                                                                                                                    
  KIR65287.1 321 dgyqvstlddvveqadifitatgcfdvitnehmarmkhqaivgnighfdneidmaglakrsdverinikpqvdlwrfadghaiivlsegrllnlgnatg 419
                 *************************************************************************************************** PP

                 S-HHHHHHHHHHHHHHHHHHHHTTSSS-SSEEE--CHHHHHHHHHCCCCCT-------HHHHHCCTSXTTSXXSXTTXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase 221 hpsfvmsasftnqvlaqielfkkekkyekkvyvlpkklDekvarlhleklgaklteltkeqaeyigveveGPfkpdhYr 299
                 hpsfvms+sf+nq++aqielf+k+++y+ +vyvlpk+lDekvarlhl++lgakl++ltkeqa+y+gv+ eGPfkp+hYr
  KIR65287.1 420 HPSFVMSNSFANQTIAQIELFTKTEEYPIGVYVLPKHLDEKVARLHLDALGAKLSTLTKEQAAYLGVSPEGPFKPEHYR 498
                 ******************************************************************************9 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.2   2.3   5.3e-86   8.6e-83       1     162 []     257     419 ..     257     419 .. 0.99

  Alignments for each domain:
  == domain 1  score: 276.2 bits;  conditional E-value: 5.3e-86
                    HHHHHCCCCCHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCTTT-SEEEE-SSSSSSB-HHH CS
  AdoHcyase_NAD   1 nlygcreslvdgikratdvllaGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvtleevvkkadivvtttGnkdiitleh 96 
                    n+ygcr+sl+dgi+ratdvl++Gk+avv GyGdvGkGca+sl+g+Garv+vtevdPicalqaam+G++v tl++vv++adi++t+tG+ d+it+eh
     KIR65287.1 257 NKYGCRHSLIDGINRATDVLIGGKMAVVLGYGDVGKGCAESLRGQGARVVVTEVDPICALQAAMDGYQVSTLDDVVEQADIFITATGCFDVITNEH 352
                    89********************************************************************************************** PP

                    HCCS-TTEEEEE-SSTTTTBTHHHHHTT.T-EEEEEETTEEEEE-TTS-EEEEEGGGSBCHHHTS-- CS
  AdoHcyase_NAD  97 lkkmkddaivcniGhfdseidvaalean.alkkeevkpqvdrvtlkdgkkiillaeGrllnlgcatg 162
                    +++mk++aiv+niGhfd+eid+a+l++  +++++++kpqvd ++++dg++ii+l+eGrllnlg+atg
     KIR65287.1 353 MARMKHQAIVGNIGHFDNEIDMAGLAKRsDVERINIKPQVDLWRFADGHAIIVLSEGRLLNLGNATG 419
                    *************************98879***********************************97 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.1   2.4e-10     4e-07      34     127 ..     277     366 ..     259     385 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2.4e-10
                   GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS CS
  2-Hacid_dh_C  34 lsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpltpetrhlinaeelakmkkgailiNta 127
                   + gk   ++G+G++G+  a+ l++ g++v+++++ +    +++  g+++ +l+++++++Di + ++       ++i++e++a+mk +ai+ N++
    KIR65287.1 277 IGGKMAVVLGYGDVGKGCAESLRGQGARVVVTEVDPICALQAAMDGYQVSTLDDVVEQADIFITATG----CFDVITNEHMARMKHQAIVGNIG 366
                   6799999****************************9988899999****************998877....5679**************99987 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.2   3.1e-09   5.1e-06       2      67 ..     277     341 ..     276     392 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 3.1e-09
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE- CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmil 67 
                 + gk  +v+GyG  G+  a+ lr +g  vvv+  +    + +A  +g++v t++++v++ad+ ++ 
  KIR65287.1 277 IGGKMAVVLGYGDVGKGCAESLRGQGARVVVTEVDPI-CALQAAMDGYQVSTLDDVVEQADIFITA 341
                 56788899***********************998887.7778889****************97654 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.9e-07   0.00047      12     100 ..     279     358 ..     271     369 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.9e-07
                   T-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS-SB-HHHHHCCHH CS
  Shikimate_DH  12 ekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisataseepilekeeveealk 100
                   +k ++++G G +++  a+ L  +g++ vvv+  +++   +l   ++g+     +++ l++++++ad+ i+at+  ++i ++e++ ++++
    KIR65287.1 279 GKMAVVLGYGDVGKGCAESLRGQGAR-VVVT--EVDPICALQAAMDGY-----QVSTLDDVVEQADIFITATGCFDVI-TNEHMARMKH 358
                   68899*********************.6666..577788888888777.....788888999***********98865.5666666654 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   5.1e-06    0.0083       2      46 ..     283     327 ..     282     350 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.1e-06
                 EEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEE CS
      TrkA_N   2 iiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvv 46 
                 +++G+G+vG+  ae L+ +g +vvv + d+  + +++ +g++v  
  KIR65287.1 283 VVLGYGDVGKGCAESLRGQGARVVVTEVDPICALQAAMDGYQVST 327
                 8*****************6657********999999988888754 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   1.0   1.2e-05     0.019      29     110 ..     272     368 ..     257     388 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
                    HCT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTS.............CCHHHHHCCSSEEEE-SS-TT-B-GGGS...-TT-EEEE-- CS
  THF_DHG_CYH_C  29 etgielegkkvvvvGrsnivgkplallLleknatVtvchskt.............kdlaeitreadivvvavGkpelikaemv...kegavviDvG 108
                    +t++ + gk +vv+G ++ vgk  a  L  ++a V v++                + l++++++adi ++a+G  ++i++e++   k++a+v ++G
     KIR65287.1 272 ATDVLIGGKMAVVLGYGD-VGKGCAESLRGQGARVVVTEVDPicalqaamdgyqvSTLDDVVEQADIFITATGCFDVITNEHMarmKHQAIVGNIG 366
                    566778899999999886.8999999999987777665433222222244444457899********************99865558899999998 PP

                    -E CS
  THF_DHG_CYH_C 109 in 110
                    + 
     KIR65287.1 367 HF 368
                    74 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   2.5e-05     0.041       4      72 ..     284     345 ..     280     362 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.5e-05
                    EETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HH CS
  F420_oxidored   4 iiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpe 72 
                    ++G+G++g++ a+ l  +g     +vv+ + +p  a  l++++  + + ++  +++e+ad+ + a    
     KIR65287.1 284 VLGYGDVGKGCAESLRGQG---ARVVVT-EVDPICA--LQAAMD-GYQVSTLDDVVEQADIFITATGCF 345
                    56*****************...999967.5555544..333333.33444599********99987655 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   3.5e-05     0.058       7      82 ..     279     357 ..     275     374 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.5e-05
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvk.laeeelekdlegadlviaatd..drelneriaeaa 82 
                    gk  +v G G+v+   +++l  +ga+v+v   +   +l+  ++ ++ ++l++ +e+ad+ i+at   d   ne++a++ 
     KIR65287.1 279 GKMAVVLGYGDVGKGCAESLRGQGARVVVTEVDPICALQAAMDgYQVSTLDDVVEQADIFITATGcfDVITNEHMARMK 357
                    78899************************777743344444444677888999**********9722334455555554 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.4   0.00018      0.29      31     124 ..     282     362 ..     265     366 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
                  EEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE---BTTSS---SC-HHHHHTS-TTEEE CS
  AlaDh_PNT_C  31 vlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigtvlipGkkaPkLvteemvksMkpgsVi 124
                   +v+G G +G   ++  +g ga+V+v++v+p  + q     +        q ++l++ v++ad+ i++          ++t+e++++Mk+++++
   KIR65287.1 282 AVVLGYGDVGKGCAESLRGQGARVVVTEVDPICALQAAM-DGY-------QVSTLDDVVEQADIFITAT-----GCFDVITNEHMARMKHQAIV 362
                  589**************************9987766543.444.......5678999**********94.....45579999999999999987 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   0.00027      0.43       3      51 ..     283     333 ..     281     362 .. 0.76
   2 ?   -0.9   0.0      0.82   1.3e+03      99     143 ..     327     374 ..     322     378 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
                 EEE--SCCHHHHHHHHHHTT-EEEEE-S-HH.HHHHHHHHHHH.HHHCCTT CS
     3HCDH_N   3 aviGaGtmGagiaavfasagleVvlvdisee.alekalekiek.sleklve 51 
                  v+G G +G+g a+ +  +g +Vv++++++  al++a++  +  +l+ +ve
  KIR65287.1 283 VVLGYGDVGKGCAESLRGQGARVVVTEVDPIcALQAAMDGYQVsTLDDVVE 333
                 599*************************98614455555544335555555 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.82
                 HHHCCS-TTSEEEE--SSS-H..HHHCCCSSSGGGEE.EEEE-SSTTT CS
     3HCDH_N  99 elekiakpdailasnTSslsi..selaealkrpervi.glHFfnPppl 143
                 +l+ ++++  i+++ T  +++  +e ++++k+++ v  + HF n +++
  KIR65287.1 327 TLDDVVEQADIFITATGCFDVitNEHMARMKHQAIVGnIGHFDNEIDM 374
                 789999999999999999887223444444444443213588777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 3111.99
//
Query:       KIR65288.1  [L=297]
Description: iron transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-52  176.4  14.8    8.9e-52  176.1  14.8    1.0  1  FTR1      Iron permease FTR1 family
  ------ inclusion threshold ------
        2.9    7.3   5.4       0.49    9.8   0.8    2.0  2  DUF1129   Protein of unknown function (DUF1129)


Domain annotation for each model (and alignments):
>> FTR1  Iron permease FTR1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.1  14.8     1e-55   8.9e-52       1     291 [.       1     261 [.       1     265 [. 0.96

  Alignments for each domain:
  == domain 1  score: 176.1 bits;  conditional E-value: 1e-55
        FTR1   1 lfaiflvvlregleaslivsvllallkqtqretdklqvwagialavllalaigqafasitaalqkdkalieeellegvlsliavvviswmilwmrrvgk 99 
                 +fa++l+ lreglea l+vs+l+a+l ++qr+++  qvw g+ lav+l++++g  ++ ++ +l     +   el+e+v s++avv+++wmi+wmrr ++
  KIR65288.1   1 MFATYLIGLREGLEATLVVSILVAFLVKSQRRDRLPQVWGGVGLAVALSVLFGWLIEYTSTSLLA--RSEDRELFEAVTSVAAVVFVTWMIFWMRRAAR 97 
                 8***********************************************************99986..89999*************************** PP

        FTR1 100 klkeeveqklakavaeiknrekaaqkgekgsekwalfilsFlivlREGlEavLfvaaivaytvkrvsalilgvvlGaliavvlglliyrglvklslqsf 198
                  + +e++++l +a+a +                 a++ ++Fl+v+REGlE+ L+ +++ + + ++ s ++l+ ++G++ av++g+ +y  +++++l++f
  KIR65288.1  98 TIAGELRGRLTEALAVG---------------SLAVAGMAFLAVIREGLETALIFYSAAQGAAGD-SGPLLALLAGIASAVAIGVGLYFSALRINLSTF 180
                 **************955...............89**********************999999965.********************************* PP

        FTR1 199 filegflLllvaagLfsvgtlellekaeacngkdyiefkkskslskisllslllvaflaveregleivlaliGwantgplglivyaavwlvvl 291
                 f+++g lL+lvaag + +g ++++e++    g+ +++f+ s++l++ ++++ ll ++++v   +   vl  + w+ +         av + vl
  KIR65288.1 181 FTWTGALLILVAAGILKYGVHDFQEAGVL-PGLNDLAFDISATLDPSTWYAALLAGMFNVTPAP--SVLETVAWVAY---------AVPVLVL 261
                 *****************************.**********************************..99999999999.........5555444 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.8   5.5e-05      0.49     130     200 ..      18      94 ..       2      99 .. 0.65
   2 ?   -2.4   0.3      0.31   2.8e+03     166     194 ..     229     257 ..     223     261 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 5.5e-05
     DUF1129 130 vyrlltre....kkkkkrpplwkrl..lilllllvvwlvlftlvallpaviNpvLpplvliiigviafvvryylkkk 200
                 v+ +l       +++++ p++w  +  +++l +l+ wl+ +t ++ll ++  + L + v+ + +v+ +  ++++ ++
  KIR65288.1  18 VVSILVAFlvksQRRDRLPQVWGGVglAVALSVLFGWLIEYTSTSLLARSEDRELFEAVTSVAAVVFVTWMIFWMRR 94 
                 44444333221144455556665441144445566699999999999999999999999999999999888888776 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.31
     DUF1129 166 lvallpaviNpvLpplvliiigviafvvr 194
                  +all  ++N++  p vl  ++ +a++v 
  KIR65288.1 229 YAALLAGMFNVTPAPSVLETVAWVAYAVP 257
                 55677888888888888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2127.42
//
Query:       KIR65289.1  [L=377]
Description: peptidase M75 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-43  148.4   3.8    3.6e-43  148.1   3.8    1.1  1  Peptidase_M75  Imelysin
    2.1e-11   43.9   0.0    3.4e-11   43.2   0.0    1.3  1  Cupredoxin_1   Cupredoxin-like domain
  ------ inclusion threshold ------
       0.07   13.6   1.1        4.3    7.9   0.1    2.8  2  HSCB_C         HSCB C-terminal oligomerisation domain
       0.11   12.7   0.0       0.42   10.7   0.0    1.9  2  DUF4363        Domain of unknown function (DUF4363)


Domain annotation for each model (and alignments):
>> Peptidase_M75  Imelysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1   3.8   8.1e-47   3.6e-43       1     287 [.     141     370 ..     141     371 .. 0.94

  Alignments for each domain:
  == domain 1  score: 148.1 bits;  conditional E-value: 8.1e-47
                    HHHHHHHHHHH.HHHHHHHHHHHHHCB-HHHHHHHHHHHHHHHHHHHHHCCG-TCHHHH.HHHHH-SS-TCHHHHHHHHHHHHHSTT--TCCCCGS CS
  Peptidase_M75   1 alaaYedllta.aeaLqsavdallaaptaanleaAreawlaarvayeqsevfrfgpvdawegqvnaWPldeglldyvvdardadedaitpellase 95 
                    a+a+Y++++++ ++aL ++++ ++aa++a+++++A++ +  ar+ +e++e++++               ++g+ld+++d+r   e+ ++      e
     KIR65289.1 141 ATASYQRYVNSqTAALLTKTEEFVAAVKAGDVAKAKALYPVARTYWERIEPVAE---------------SFGDLDPKIDGR---EEVVE------E 212
                    689***************************************************...............9***********...53333......3 PP

                    GGGGSHHHHHHHHHCCTTSH...TTTS..HHHHHHHHHHHHHHHHHHHHHHHT...CHHHHHCCHSHHHHHHHHHCCHHHHHHHHHHCTTHHHHTS CS
  Peptidase_M75  96 anvvtGfhaiEflLfgqdlgagtrpvtdyleylkavaallvsdlqelaaawqpetegnyraaltasekealeeilngmgslldelaserikvplsa 191
                      ++tGfh+iE+ L+ ++           + +  ++a++l +d+++++a  ++e+              ++ ++ ng+++llde+as +i+     
     KIR65289.1 213 GMEFTGFHRIEKDLWTTG-D---------ISADGPIADRLLTDVKAIVAKANAEKL-------------TPLQLANGAKALLDEVASGKIT----- 280
                    577***************.6.........88999******************8765.............8999*****************9..... PP

                    CHHCHSTTTTTT-HHHHHHHHHHHHHHHHCTS.SCCHHHHHCCCSCHHHHHHHHHHHHHHHHHHCSSS....SGGGGCT-HHHHHHHHHHHHHHHH CS
  Peptidase_M75 192 pdpedeedcfsdnsladiqanleGirnvylgesgaslrdlveaadpalaeqldaalaaleaalaaiaa....pfdqaigdaegraliqaaidaLse 283
                        +ee+++s+++l+d++anleG + +      a+lr+++e+++p+l +qlda++a++e+al + ++    ++ +a+++ae ++l ++ i+aL+e
     KIR65289.1 281 ----GEEERYSHTDLWDFNANLEGSKAAI-----AALRPALEQRAPELVTQLDAEFANVETALGKHRDgdgwKLHTALSKAELKELSDS-INALAE 366
                    ....*************************.....********************************997888888999********999.*****9 PP

                    HHHH CS
  Peptidase_M75 284 ltsl 287
                    ++s+
     KIR65289.1 367 PISK 370
                    9876 PP

>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   7.5e-15   3.4e-11      16     101 ..      28     122 ..       6     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 7.5e-15
  Cupredoxin_1  16 a...aaaektveitvkdggfePskievkagekvklkiknkdktpeefesed.....lgeekvlapgktttitiaplkpGeYeftcd..mhmd.akGk 101
                   +    a+   ++++++d+++e  + e+ ag+ + ++++n +++++ef+++      +ge +++apg + ++ + +l +G+Ye +c+  m  + ++G 
    KIR65289.1  28 KdagTADGGPIAVKASDTACEVGRTELAAGQ-TVFEVTNSGAKVTEFYVYAagdrvMGEVENIAPGLKRELRV-ELPAGTYETACKpgMSGKgIRGA 122
                   1233566677********************9.77*********************99999************9.***********955555666665 PP

>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.032   1.4e+02      32      72 ..     146     190 ..     132     193 .. 0.69
   2 ?    7.9   0.1   0.00096       4.3      23      58 ..     300     333 ..     294     340 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.032
                 HHHHHHHHHHHHHHHHHHH...HTT-HHHHHHHH.HHHHHHHHHH CS
      HSCB_C  32 kaeveerieeleaeleeaf...ekkdleaaadll.rrlrYlekik 72 
                 ++ v+++ ++l+++ ee     ++ d+++a++l+ +  +Y+e+i+
  KIR65289.1 146 QRYVNSQTAALLTKTEEFVaavKAGDVAKAKALYpVARTYWERIE 190
                 4555566666666666666444666******99867888999996 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00096
                 SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH CS
      HSCB_C  23 adkeeleelkaeveerieeleaeleeafekkdleaa 58 
                 ++k+++++l+ ++e+r  el+++l+++f + ++e+a
  KIR65289.1 300 GSKAAIAALRPALEQRAPELVTQLDAEF-A-NVETA 333
                 5679************************.3.56655 PP

>> DUF4363  Domain of unknown function (DUF4363)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.5e-05      0.42       4      54 ..     146     196 ..     144     201 .. 0.93
   2 ?   -2.1   0.0      0.92   4.1e+03      52      71 ..     346     365 ..     343     370 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.5e-05
     DUF4363   4 qnylkkstdelsekleeleeaienedweeakekleelekeWekkkkklsif 54 
                 q+y++++t  l +k+ee  +a++++d ++ak     ++  We  +++ + f
  KIR65289.1 146 QRYVNSQTAALLTKTEEFVAAVKAGDVAKAKALYPVARTYWERIEPVAESF 196
                 79****************************************999988776 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.92
     DUF4363  52 sifiehdeldeietslaklk 71 
                 +  ++  el+e++ s+ +l 
  KIR65289.1 346 HTALSKAELKELSDSINALA 365
                 55566666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.34s 00:00:00.96 Elapsed: 00:00:00.53
# Mc/sec: 2137.55
//
Query:       KIR65290.1  [L=426]
Description: peroxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.3e-105  351.7   0.0   3.8e-105  351.5   0.0    1.0  1  Dyp_perox  Dyp-type peroxidase family


Domain annotation for each model (and alignments):
>> Dyp_perox  Dyp-type peroxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.5   0.0  2.1e-109  3.8e-105       1     326 [.      58     414 ..      58     415 .. 0.97

  Alignments for each domain:
  == domain 1  score: 351.5 bits;  conditional E-value: 2.1e-109
                 BSSSSS-C-SEEEEEEEEE-TTCHHHHHHHHHHHHHHHHHHHHCCCC............SCSSHCTCCCTHSTTTT-EEEEEEEHHHHH......HTTS CS
   Dyp_perox   1 qagiltplqaaaifvaldvkakdkakleallrkltarverLtageka............ppadtgealkarkpdsrLtvtvgiGsslfd......rlgl 81 
                 qagi+tp+q++++fva+dv +kd+a+l +ll ++ta+++r+tag+ a            pp+dtgeal++  p+s+Lt+tvg+G+ lf+      r+gl
  KIR65290.1  58 QAGITTPAQDRLHFVAFDVVTKDRARLVELLGEWTAAAARMTAGKDAgvigavggvpeaPPDDTGEALGL--PPSQLTLTVGFGPTLFRdaqgrdRFGL 154
                 89*****************************************************************988..79**************9999999**** PP

                 CGGS-TTCS----ETTTTEEGGGS--SEEEEEEESSHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEHC....TSTTCB-TTSSBSSTTS--TCHHHHHH CS
   Dyp_perox  82 kekrpkeLkplpelkndkldapstdgDlliqiraeredvafealrailkafgdavevrdevkGFrsss....gkvtarnLlGFvDGTeNpkgeeakeav 176
                 +++rp++L +lp++ +d l+ + ++gDl++q++a++++va++a+r++++  ++ v+vr+++ GF ++s    g+ t+rnL+GF+DGT+N k+e+    +
  KIR65290.1 155 ADRRPAALVDLPHFAGDALRPEISGGDLCVQACANDPQVAVHAIRNLARIGMGVVSVRWSQLGFGRTSststGQATPRNLFGFKDGTANLKAEDGGLLR 253
                 ****************************************************************99889999*********************987665 PP

                 ..HS-..CSSSGGGTT-EEEEEEEEEE-HHHHTTS-HHHHHHHHTB-TTT--BTTTTSTTS........TTTGSSS-TTSHHHHHSGESTTTEC--EE- CS
   Dyp_perox 177 ..vli..kdedewaagGsYvvvrkirhdleaWdrlslkeQedviGRrKedgaeldddkead........dseekvipkdsHvrlaklkedgkglkilRr 263
                   +++  +d+++w++gGsY+v+rkir+ +e+Wdr sl eQe+++GR K +ga+l+++ e+d        d ++  i+++sHvrla+++  + g+++lRr
  KIR65290.1 254 ehLWVqpGDGPDWMTGGSYLVTRKIRMLVETWDRSSLVEQEQIVGRAKGSGAPLGRGDEFDepdfaakgDDGQPMIAATSHVRLAHPD-ANDGARLLRR 351
                 66999889***********************************************************9999999*************6.4799****** PP

                 -EEEEEEE-TTSSCEEEEEEEEEESSCHHCHHHHHHHHSCB-GGGGCEEEEEEEEEEE-BHHH CS
   Dyp_perox 264 alsygeGldkvgkldaGllFiaYqrtlenteqmlqrmlgktdaLlefikavtgglFfapsgvk 326
                 ++++ +G d  g+ldaGl+FiaYqr+++++++++q +l+++da++e+ ++v++g+F++p+gv+
  KIR65290.1 352 GYNFVDGSDGLGRLDAGLFFIAYQRDPRRQFVPIQTRLARNDAMNEYLRHVSSGIFACPPGVR 414
                 ************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3246.74
//
Query:       KIR65291.1  [L=229]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-28   97.8   0.0    5.9e-28   97.3   0.0    1.2  1  Response_reg  Response regulator receiver domain
    1.3e-27   95.7   0.2    3.8e-27   94.2   0.1    1.8  2  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0   6.6e-32   5.9e-28       1     111 [.       5     113 ..       5     114 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 6.6e-32
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vl+vdDdp+++e l  +l++eg+     ++dg+ al+ ++e+++d++llD+++pgm+G+++++ ir e+  +p+++lta+s+  d+v +l+ gadd+
    KIR65291.1   5 VLVVDDDPALAEMLGIVLRSEGF-LPSFVADGERALAAFRENRPDIVLLDLMLPGMSGIDVARAIRGES-GVPIVMLTAKSDTVDVVLGLESGADDY 99 
                   8**********************.999****************************************98.*************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   ++Kpf+p+eL++++
    KIR65291.1 100 VVKPFKPKELVARM 113
                   **********9986 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.28   2.5e+03      49      68 ..     109     128 ..     107     134 .. 0.69
   2 !   94.2   0.1   4.3e-31   3.8e-27       1      76 [.     150     225 ..     150     226 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.28
                  HHHHHHHHHHTTTTSSSSEE CS
  Trans_reg_C  49 hisrLRkkLeddekkprlIe 68 
                   ++r+R  L+  e+   ++ 
   KIR65291.1 109 LVARMRARLRRGEDVAPELL 128
                  58999999998654444555 PP

  == domain 2  score: 94.2 bits;  conditional E-value: 4.3e-31
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYr 76 
                  geev+ltp ef+lL +L+++p++v++re Lle+vwg++++ d+r v+vh++rLR k+e+d++ p+ I tvrgvGY+
   KIR65291.1 150 GEEVKLTPLEFDLLVALARKPRQVFTREVLLEQVWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225
                  789************************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1529.01
//
Query:       KIR65292.1  [L=554]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-20   73.2   0.0      4e-20   72.4   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    5.2e-14   52.0   1.9    7.6e-14   51.5   0.6    2.0  2  HisKA        His Kinase A (phospho-acceptor) domain
    1.4e-10   41.4   1.9    1.4e-10   41.4   1.9    2.2  2  HAMP         HAMP domain
    0.00073   19.5   0.1     0.0016   18.4   0.1    1.6  1  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.052   13.3   0.2      0.096   12.5   0.2    1.5  1  DUF4132      Domain of unknown function (DUF4132)


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   1.1e-23     4e-20       2     110 ..     389     497 ..     388     499 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 1.1e-23
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETT CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesepg 99 
                 d++r++++++nlv+Nav++ ++++ +++++ ++   + ++v+D G G+ + + k++f +f + d s++r++ggtGlGlsi+ + ++l+gG ++   +pg
  KIR65292.1 389 DPRRVERVLRNLVGNAVEH-GEGKPVRITLGQDRAAVAVTVRDHGVGLKPGEEKLVFNRFWRaDPSRARQTGGTGLGLSISLEDARLHGGWLEAWGSPG 486
                 789****************.9**********7669************************************************9999*******9**** PP

                 TEEEEEEEEES CS
   HATPase_c 100 rGttftftlpl 110
                 +G +f++tlp 
  KIR65292.1 487 QGAQFRLTLPA 497
                 *********97 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.87   3.1e+03      35      64 ..     246     275 ..     221     277 .. 0.56
   2 !   51.5   0.6   2.1e-17   7.6e-14       2      67 .]     276     342 ..     275     342 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.87
                 SSCHHHHHHHHHHHHHHHHHHHHHHHHCCH CS
       HisKA  35 eelkeyletiesearrldhlvedlLdlsri 64 
                 ++l+ + ++  + a  l++++ +l ++sr+
  KIR65292.1 246 DDLALLAASFNQMATNLQRQILRLEEMSRL 275
                 455555555555555666666666666665 PP

  == domain 2  score: 51.5 bits;  conditional E-value: 2.1e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHH..HC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaL..kregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 ++rf+++v+HELrtPL++++++a+++  +r ++  + +++  e ++ e +r ++l+ dlL++sr +ag
  KIR65292.1 276 QRRFTSDVSHELRTPLTTVRMAADLIfaER-EEFEPAVARSAELLQAELDRFEELLTDLLEISRFDAG 342
                 68***********************97655.478899999*************************997 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   1.9     4e-14   1.4e-10       1      53 []     212     264 ..     212     264 .. 0.97
   2 ?   -2.3   0.0       1.7   6.2e+03      15      27 ..     359     379 ..     357     389 .. 0.52

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 4e-14
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLre 53 
                 l++r ++ P+r  ar+a+r++aG ld+r  v+g D ++ La++fN+M+++L++
  KIR65292.1 212 LVTRLVVTPVRVAARTAQRLSAGLLDQRMVVNGEDDLALLAASFNQMATNLQR 264
                 689************************************************96 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
                 HHHHHHTTT........BTSS CS
        HAMP  15 raarriaaG........dldt 27 
                 r+a+r+a          dld 
  KIR65292.1 359 RVADRLAGLaervgvtiDLDL 379
                 555566521222223355555 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   4.4e-07    0.0016      33     104 ..     394     465 ..     348     472 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.4e-07
  HATPase_c_2  33 rlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep......keslkegGrGlal 104
                  + ++  ++ Naveh+      +pv+++l +d  a+ v+v+D+G g +p + +   + +       +  +++gG Gl l
   KIR65292.1 394 ERVLRNLVGNAVEHGEG----KPVRITLGQDRAAVAVTVRDHGVGLKPGEEKL--VFNRfwradpSRARQTGGTGLGL 465
                  55555567799999987....9***********************65543222..22224556667888888888877 PP

>> DUF4132  Domain of unknown function (DUF4132)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   2.7e-05     0.096      19      81 ..     249     317 ..     224     362 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
     DUF4132  19 kelkelkkelkeqasrqrarLeeamvsgrvwtaeewqelllehpv.lgdlvrrLvwkvyeege.......a 81 
                 + l++  +++++ ++rq+ rLee+   +r++t +  +e  l+ p+ + ++++ L++   ee e       +
  KIR65292.1 249 ALLAASFNQMATNLQRQILRLEEMSRLQRRFTSDVSHE--LRTPLtTVRMAADLIFAEREEFEpavarsaE 317
                 56888899******************************..455551459*******997555544443330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 4233.28
//
Query:       KIR65293.1  [L=604]
Description: hypothetical protein TK50_07485 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-11   44.6   8.2    1.4e-11   44.6   8.2    1.8  2  Gmad1     Lipoprotein LpqB beta-propeller domain


Domain annotation for each model (and alignments):
>> Gmad1  Lipoprotein LpqB beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1      0.31   5.5e+03     118     128 ..     117     127 ..      84     131 .. 0.60
   2 !   44.6   8.2   7.9e-16   1.4e-11      11     214 ..     347     543 ..     344     560 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.31
       Gmad1 118 rvSrDGtRaAv 128
                   S DGtR+ +
  KIR65293.1 117 TDSTDGTRVTL 127
                 34888888865 PP

  == domain 2  score: 44.6 bits;  conditional E-value: 7.9e-16
       Gmad1  11 vepvpGplgegavdlrsaAvSrdgqqvaavtapdggrtLvvgsyggeasevleggsltrpSwdrdgalWvvedgaevvravrddaegeva....vveVd 105
                 ++pv  ++ +g    + ++ S+d+ ++a vta++++r+  v+  g+++ +++++g+ t   +   + +W   +  + ++  +  a+g+       ++ +
  KIR65293.1 347 AAPVTEAVNKGV-VAAGFSRSHDEIRAALVTAGADKRQRLVVGVGAAPVSIVQRGTRTFTAMG--QPVWLRSPAPDRPQGLV-VADGALYrfdsGAQLR 441
                 678999999886.8899**************88888887778889999999999987755555..45665555444444444.3444443222366677 PP

       Gmad1 106 asalra.gpvtelrvSrDGtRaAvivekdgggkvyvavVvrdadGqksltapvalatglleeavsvsWrsedtLvVlrsseggpvqalVsldgseseal 203
                 a  l+a g+vt++  S DG R+Av+v    gg +yva+V  +  G +s++ +++lat+ l++ ++v+W++e tL  ++s+ + ++ + +s+dg+ ++ l
  KIR65293.1 442 AVPLTAeGKVTAVATSLDGHRIAVVV----GGALYVAAVNLN-GGVVSVGPARRLATS-LTDLSAVDWAGENTLHLAGSAGRPAIYD-ISVDGALETPL 533
                 7777778*******************....********9765.68***********77.99999***********************.*****999988 PP

       Gmad1 204 psgnlaapvva 214
                   +  +a v+ 
  KIR65293.1 534 -RRDVGARVTH 543
                 .6666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4615.53
//
Query:       KIR65294.1  [L=234]
Description: phosphoribosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0013   18.2   0.5     0.0024   17.4   0.5    1.4  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.065   12.7   0.1      0.095   12.1   0.1    1.2  1  UPRTase       Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.5   2.7e-07    0.0024      90     123 ..     192     225 ..     190     234 .] 0.79

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.7e-07
                   EEEE-SEESSSHHHHHHHHHHHCC-BS.EEEEEEE CS
  Pribosyltran  90 VliVDDildtGgTllaalelLkekgpe.evriavl 123
                   V++ DDi++tG Tl aa++ L + g   +v  avl
    KIR65294.1 192 VVLLDDIVTTGVTLAAAARVLTATGLSpSVA-AVL 225
                   9********************9999884444.444 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.1e-05     0.095     123     162 ..     191     227 ..     173     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.1e-05
     UPRTase 123 tvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlas 162
                  v+llD ++ TG ++aaa ++L+  g   +   v++vla+
  KIR65294.1 191 VVVLLDDIVTTGVTLAAAARVLTATGLSPS---VAAVLAA 227
                 599*********************998765...5555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1499.58
//
Query:       KIR65295.1  [L=209]
Description: 30S ribosomal protein S30 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-22   77.7   0.0    7.2e-22   76.8   0.0    1.5  1  Ribosom_S30AE_C  Sigma 54 modulation/S30EA ribosomal protein 
    1.4e-21   77.0   0.7    2.2e-21   76.4   0.7    1.3  1  Ribosomal_S30AE  Sigma 54 modulation protein / S30EA ribosoma
  ------ inclusion threshold ------
       0.16   12.2   0.3       0.32   11.3   0.3    1.4  1  DUF3912          Protein of unknown function (DUF3912)


Domain annotation for each model (and alignments):
>> Ribosom_S30AE_C  Sigma 54 modulation/S30EA ribosomal protein C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   1.2e-25   7.2e-22       5      57 .]     152     204 ..     148     204 .. 0.96

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 1.2e-25
                      -EEEEE-S--S-B-HHHHHHHHHHHT-SEEEEEETTTTEEEEEEEETTSCEEE CS
  Ribosom_S30AE_C   5 eivrtkrfelkpmsveeAilqmellghdFfvFrnaetgevnVvYrrkdgnYGL 57 
                       i r k ++++pm+v++A+ qmel+ghdF++F+++e+g+++VvYrr+  +YG+
       KIR65295.1 152 HIARAKVHPAEPMTVDDALFQMELVGHDFYLFHDKESGRPSVVYRRHAYDYGI 204
                      699*************************************************6 PP

>> Ribosomal_S30AE  Sigma 54 modulation protein / S30EA ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.7   3.7e-25   2.2e-21       1      86 []       3      99 ..       3      99 .. 0.90

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 3.7e-25
                     EEEEECTS---HHHHHHHHHHHCCGGGG....-EEEEEEE.....EE....EEEEEEEEECTTEEEEEEEEESSHHHHHHHHHHHHHHHHHHCHHT CS
  Ribosomal_S30AE  1 ieitgrnievtdalkeyvekkleklekyf...ieadVtls.....kk....kkvevtirlakgkviraeeesedlyaaidlavdklerqlrkykek 84
                     i ++grn+ev+d+ + +v +kl+k+e+y    i++dV+l      ++    ++ve+t  +++g+virae+ ++d+y+a+d+a+ kl+ +lr+  ++
       KIR65295.1  3 IVVKGRNVEVPDHYRVHVAEKLAKIERYDhklIRVDVELFhernpRQsdhcQRVEITC-VSRGPVIRAEACTDDFYSALDAAIAKLDNRLRRAADR 97
                     689*************************55669*****997766611677899*****.788********************************99 PP

                     TX CS
  Ribosomal_S30AE 85 lk 86
                     ++
       KIR65295.1 98 RR 99
                     85 PP

>> DUF3912  Protein of unknown function (DUF3912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   5.4e-05      0.32      23      63 ..       4      44 ..       2      52 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.4e-05
     DUF3912 23 vvkkkeqedddhftvviddqdidvelkdillvdvDvgkfhe 63
                vvk ++ e  dh+ v + ++  ++e+ d  l+ vDv  fhe
  KIR65295.1  4 VVKGRNVEVPDHYRVHVAEKLAKIERYDHKLIRVDVELFHE 44
                56777778889*****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1606.32
//
Query:       KIR65296.1  [L=374]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-50  169.5   0.0    1.6e-23   83.9   0.0    2.1  2  Acetyltransf_3  Acetyltransferase (GNAT) domain
    1.4e-17   64.0   0.1    1.6e-08   34.8   0.0    2.2  2  Acetyltransf_1  Acetyltransferase (GNAT) family
    4.3e-10   39.4   0.8     0.0002   21.1   0.0    2.3  2  Acetyltransf_8  Acetyltransferase (GNAT) domain
    3.7e-06   26.8   0.6      0.032   14.2   0.1    2.5  2  FR47            FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0     4e-27   1.8e-23       3     138 .]      16     154 ..      15     154 .. 0.91
   2 !   83.9   0.0   3.6e-27   1.6e-23       3     138 .]     205     343 ..     204     343 .. 0.90

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 4e-27
  Acetyltransf_3   3 lLrplteeDlealfelrsdpevmry...lpepltleeaeewlerawaeeseeegygwaivlkdtgv.iGsvglrdleeedeeaelgymlapsfwg 93 
                      Lrp++ eD++++++ ++dp ++r+   +p p+t+++a+ w+++   +  +  g  +ai +++t+  +G +gl +l + +++aelgy++ap ++g
      KIR65296.1  16 RLRPYRVEDVPDVAAACADPLTQRFisgMPSPYTEADARWWVTEGAPAARAAGGASYAIADPATDRlLGGAGLGNLVPVRGQAELGYWVAPWARG 110
                     79***********999*********888888************7544444455688***99888877**************************** PP

  Acetyltransf_3  94 kGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     +G+at a+ral  +af++  + r++  +++eN+aS+rv+  +Gf+
      KIR65296.1 111 RGVATAATRALAAAAFAHG-TARMELLTHPENTASQRVALAAGFR 154
                     ****************888.999********************96 PP

  == domain 2  score: 83.9 bits;  conditional E-value: 3.6e-27
  Acetyltransf_3   3 lLrplteeDlealfelrsdpevmry..lpepltleeaeewlera...waeeseeegygwaivlkdtgv.iGsvglrdleeedeeaelgymlapsf 91 
                     ++rp+ ++D+ealf+l s pev+     p  +t++e e++++ a   w +   +e+  +aiv+ +tg+  G ++l++ e+ +++a +g+ l p+ 
      KIR65296.1 205 TVRPVGPDDAEALFALHSLPEVVANrvPPRAPTPAEVERRCRLAgtrWLA---GEAADLAIVDAHTGElAGGCMLYHDEQATGQAMVGFSLLPAG 296
                     78*******************77444366689999999999955555655...477889*******988*************************9 PP

  Acetyltransf_3  92 wgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     +g+G+at avr ++ +af+  gl r++a + +eN aS+rvle++Gf+
      KIR65296.1 297 RGRGLATRAVRLVTGWAFDGVGLARVWAGTRPENAASQRVLERAGFT 343
                     9*********************************************6 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0     7e-10   3.1e-06      41     117 .]      79     153 ..      37     153 .. 0.75
   2 !   34.8   0.0   3.6e-12   1.6e-08      30     117 .]     256     342 ..     224     342 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 7e-10
                     TTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  41 dgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                      ++l+G ++l    +  +g a++ +++V+p +rg+G+++a  +al+  a+ +g  +++l +++ n+a++r+    GF
      KIR65296.1  79 TDRLLGGAGLGNLVP-VRGQAEL-GYWVAPWARGRGVATAATRALAAAAFAHGTARMELLTHPENTASQRVALAAGF 153
                     255666665555544.5777888.9*****************************9999999999******9977887 PP

  == domain 2  score: 34.8 bits;  conditional E-value: 3.6e-12
                     STTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  30 leaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYeklGF 117
                     + a+  +v  + gel+G ++l+ + + ++g a + ++   p+ rg+Gl+++ ++ +  +a++  g+ ++++ +++ n a++r++e+ GF
      KIR65296.1 256 EAADLAIVDAHTGELAGGCMLYHDEQ-ATGQAMV-GFSLLPAGRGRGLATRAVRLVTGWAFDGvGLARVWAGTRPENAASQRVLERAGF 342
                     333345556666************99.6777777.99*******************************999*****************9 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   1.1e-06    0.0051      86     141 ..     104     157 ..      93     160 .. 0.90
   2 !   21.1   0.0   4.4e-08    0.0002      89     141 ..     294     346 ..     278     349 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.1e-06
                     ESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEE CS
  Acetyltransf_8  86 igeaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekek 141
                     ++ ++arg+g++ta  ral++ +fa+ +t+r+ +  +++N+++ r+  +aGf++e+
      KIR65296.1 104 VA-PWARGRGVATAATRALAAAAFAH-GTARMELLTHPENTASQRVALAAGFRHEG 157
                     55.799*******************9.99999999999***************987 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 4.4e-08
                     HHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEE CS
  Acetyltransf_8  89 aeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekek 141
                     ++ rg+gl+t+ +r ++ ++f+  + +rv +  +++N+++ r+le+aGf++e+
      KIR65296.1 294 PAGRGRGLATRAVRLVTGWAFDGVGLARVWAGTRPENAASQRVLERAGFTREG 346
                     5679**********************************************987 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00011      0.48      29      79 ..     104     155 ..      98     161 .. 0.86
   2 !   14.2   0.1   7.1e-06     0.032       4      79 ..     262     344 ..     259     347 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
                 E-GGG-SSSHHHHHHHHHHHHHHHS-S-.EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  29 vlpehrrrGlgsrlvkalakeiaergkt.vllvvvasNtpsirlyeklGfek 79 
                 v p +r+rG ++  ++ala++  + g   + l++ ++Nt+s+r+  + Gf+ 
  KIR65296.1 104 VAPWARGRGVATAATRALAAAAFAHGTArMELLTHPENTASQRVALAAGFRH 155
                 67889**************999998765166999*********998888886 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 7.1e-06
                 EEETTT--EEEEEE.....E-TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHH.S-.S-EEEEEETT-HHHHHHHHHHT-EE CS
        FR47   4 lyrkelgelaawil.....rkdggelgalqvlpehrrrGlgsrlvkalakeiae.rg.ktvllvvvasNtpsirlyeklGfek 79 
                 +++ ++gela++++     +  g ++ +  +lp  r+rGl++r v+ ++       g   v + ++++N +s+r++e+ Gf+ 
  KIR65296.1 262 IVDAHTGELAGGCMlyhdeQATGQAMVGFSLLPAGRGRGLATRAVRLVTGWAFDgVGlARVWAGTRPENAASQRVLERAGFTR 344
                 667778888888864432233446799999****************99988777644367888899***************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2981.25
//
Query:       KIR65297.1  [L=397]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-53  179.4   1.1    1.2e-26   94.1   0.1    2.1  2  Acetyltransf_3  Acetyltransferase (GNAT) domain
    8.3e-15   55.1   0.1    2.7e-06   27.6   0.0    2.2  2  Acetyltransf_1  Acetyltransferase (GNAT) family
    3.5e-10   39.7   4.1    0.00027   20.7   0.6    3.2  3  Acetyltransf_8  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.16   12.4   0.0        9.1    6.8   0.0    2.3  2  Acetyltransf_7  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.1   2.6e-30   1.2e-26       2     138 .]      11     151 ..      10     151 .. 0.94
   2 !   84.5   0.1   2.3e-27     1e-23       2     138 .]     217     356 ..     216     356 .. 0.93

  Alignments for each domain:
  == domain 1  score: 94.1 bits;  conditional E-value: 2.6e-30
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmry..lpepltleeaeewlera....waeeseeegygwaivlkdtgv.iGsvglrdleeedeeaelgymlap 89 
                     LlLrp++++D++a+++ ++dp+++r+  +p p+ +e a++++ ++    w+++   +   +a+++ +tg+ + s+gl ++++ ++++e+gy++ap
      KIR65297.1  11 LLLRPWRAADADAVHRACQDPDIQRWttVPRPYLPEHARAFVGEIsagdWRAG---TRAPFAVCDAATGElLASCGLVSVDRTTDTGEVGYWVAP 102
                     89*************99*********88888************9976666653...5577*****999988************999********* PP

  Acetyltransf_3  90 sfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                      ++g G+at a+ral ++af+ lgl+rl++ ++  N+aS+  + ++Gf+
      KIR65297.1 103 WARGLGVATRATRALARWAFDALGLRRLIWQAEIGNHASRLAALRAGFR 151
                     ***********************************************96 PP

  == domain 2  score: 84.5 bits;  conditional E-value: 2.3e-27
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmry..lpepltleeaeewlera....waeeseeegygwaivlkdtgviGsvglrdleeedeeaelgymlaps 90 
                     L Lrp++e Dl+a+ e + dp+++++  +p p+++++ae + +++    wa+   ++g  +++ + +++ + sv lr +  ++ ++ +g+m ap+
      KIR65297.1 217 LRLRPIEEGDLDAITETCRDPHTVEWttVPAPYERADAEGFRRDVadaaWAR---GTGAYFTVADDEDRYVASVDLRIAAADPVQGMVGFMTAPH 308
                     89********************999*88888*******99999877767776...47888***8888867*******99999999********** PP

  Acetyltransf_3  91 fwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     ++g+Gy+  a++al  + f++lgl r+++++   N+aS+rv+ek+Gf+
      KIR65297.1 309 ARGRGYMPAATAALAAWGFTTLGLARVEWRALVGNTASRRVAEKAGFT 356
                     ***********************************************6 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   6.1e-10   2.7e-06      28     117 .]      60     150 ..      31     150 .. 0.73
   2 !   25.6   0.0   2.5e-09   1.1e-05      14     117 .]     247     355 ..     234     355 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 6.1e-10
                     HHSTTCEEEE..EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  28 fsleaegllv..aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYeklGF 117
                     ++  +   ++      gel++ ++l  ++   ++++++ +++V+p +rg G++++  +al+++a++  g++++ ++ e  n+a++    + GF
      KIR65297.1  60 WRAGTRAPFAvcDAATGELLASCGLVSVDR-TTDTGEV-GYWVAPWARGLGVATRATRALARWAFDAlGLRRLIWQAEIGNHASRLAALRAGF 150
                     444444333312445599999999999999.5566666.*********************************999999999999766667776 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 2.5e-09
                     HHHHHHHHHH......HHHHHHSTTC.EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEE CS
  Acetyltransf_1  14 ppnedaseee......feesfsleae.gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivla 100
                      p+e+a+ e        +  + + ++ ++ va ++++ ++ + l++      +v  + +++ +p +rg+G+  a   al+ + +   g+ ++++ 
      KIR65297.1 247 APYERADAEGfrrdvaDAA-WARGTGaYFTVADDEDRYVASVDLRIAAA--DPVQGMVGFMTAPHARGRGYMPAATAALAAWGFTTlGLARVEWR 338
                     3344444444213433333.455555366669999************99..5666777************************************9 PP

                     EETTEHHHHHHHHHTTE CS
  Acetyltransf_1 101 veedndaairlYeklGF 117
                       + n+a++r+ ek GF
      KIR65297.1 339 ALVGNTASRRVAEKAGF 355
                     99**************9 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.23     1e+03       4      28 ..      19      43 ..      17      62 .. 0.72
   2 !   18.3   0.0   3.1e-07    0.0014      85     144 ..      99     157 ..      78     158 .. 0.91
   3 !   20.7   0.6     6e-08   0.00027      74     142 ..     292     360 ..     223     362 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.23
                    GGHHHHHHHCTSCCCHHHH-----H CS
  Acetyltransf_8  4 aDlellhrWmnrprvaewweeagtl 28
                    aD++ +hr  ++p +++w     + 
      KIR65297.1 19 ADADAVHRACQDPDIQRWTTVPRPY 43
                    7999999999999999998766654 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 3.1e-07
                     EESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEEEE CS
  Acetyltransf_8  85 ligeaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekekevd 144
                     +++ ++arg g++t+  ral++++f+  + rr +   ++ N++++ +  +aGf+  +e++
      KIR65297.1  99 WVA-PWARGLGVATRATRALARWAFDALGLRRLIWQAEIGNHASRLAALRAGFRVSGELR 157
                     555.7999***********************************************99976 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 6e-08
                     ---TT-EEEEEEESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEE CS
  Acetyltransf_8  74 daepgdrGiHlligeaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekeke 142
                      a +   G+  +   ++arg+g+++a   al+++ f+  + +rv     v N++++r+ ekaGf+ e++
      KIR65297.1 292 AAADPVQGMVGFMTAPHARGRGYMPAATAALAAWGFTTLGLARVEWRALVGNTASRRVAEKAGFTMEGT 360
                     56677788888888999***********************************************99876 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.028   1.3e+02      16      47 ..      83     115 ..      64     147 .. 0.67
   2 ?    6.8   0.0     0.002       9.1       4      41 ..     273     314 ..     270     329 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.028
                     EEEEEEEES....TCTEEEEE-GGGTTSSHHHHHHH CS
  Acetyltransf_7  16 Gfialslld....aeitrlaVdpeyrgkGiGraLle 47 
                     G ++   +d    + + + +V+p +rg G++++  +
      KIR65297.1  83 GLVS---VDrttdTGEVGYWVAPWARGLGVATRATR 115
                     3333...3343244444489***********98655 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.002
                     EEEEEEETTEEEEEEEEEEES....TCTEEEEE-GGGTTSSH CS
  Acetyltransf_7   4 evfVaeddgkivGfialslld....aeitrlaVdpeyrgkGi 41 
                     ++ Va+d+++ v  + l + +        ++ ++p++rg+G+
      KIR65297.1 273 YFTVADDEDRYVASVDLRIAAadpvQGMVGFMTAPHARGRGY 314
                     67799999999998888888875544444499*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2900.76
//
Query:       KIR65298.1  [L=972]
Description: preprotein translocase subunit SecA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.2e-128  426.7   0.1   6.6e-128  426.0   0.1    1.3  1  SecA_DEAD     SecA DEAD-like domain
    1.7e-64  217.6   2.5    3.9e-64  216.4   2.5    1.6  1  SecA_SW       SecA Wing and Scaffold domain
    1.7e-34  118.8   0.1    5.4e-34  117.2   0.1    1.9  1  SecA_PP_bind  SecA preprotein cross-linking domain
    7.3e-10   38.6   7.6    1.2e-09   37.8   7.6    1.4  1  SEC-C         SEC-C motif
      0.004   16.9   0.0      0.011   15.5   0.0    1.6  1  DEAD          DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.035   14.3   0.8       0.18   12.0   0.1    2.4  2  Lge1          Transcriptional regulatory protein LGE1
      0.062   13.6   1.2       0.44   10.9   0.0    2.5  2  Helicase_C    Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.0   0.1  2.6e-131  6.6e-128       2     290 .]       5     386 ..       4     386 .. 0.99

  Alignments for each domain:
  == domain 1  score: 426.0 bits;  conditional E-value: 2.6e-131
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD   2 kkllgsknerelkklkkiveeineleeelkalsdeeLrakteelkerlaegealdellpeafalvreaakrvlgmrhydvQliGglvlhegkiaemkTG 100
                 +k+l++ + r +++lk+i++++n++e+++ +l+d+eLr  t++++erla+ge+ld+llpeafa+vreaa rvlg+r+ydvQ++Gg +lh g+iaemkTG
  KIR65298.1   5 EKVLRAGEGRMVRRLKAIAAAVNSIEDDYVNLTDDELRGLTDQYRERLADGETLDDLLPEAFATVREAAARVLGQRPYDVQVMGGAALHFGNIAEMKTG 103
                 56777888999**************************************************************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD 101 EGKtlvatlpaylnaltgkgvhvvtvndYLakrdaewmgpvyeflGlsvgvieseleseerreaYeaditYgtnnelgfdyLrDnlalskeelvqrgln 199
                 EGKtl++++++ylnal+gkgvhvvtvndYLa+rda+wmg+v+eflGl+vgv+  +  ++e r+aYe+ditYgtnne+gfdyLrDn+a sk+elvqrg+n
  KIR65298.1 104 EGKTLTSVMAVYLNALSGKGVHVVTVNDYLAQRDAAWMGRVHEFLGLTVGVVLPNRPASEHRAAYECDITYGTNNEFGFDYLRDNMAWSKDELVQRGHN 202
                 *************************************************************************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................... RF
   SecA_DEAD 200 faivDEvDsvLiDeArtpLiisgpaeeeselyeeakklvkeleeeed.................................................... 246
                 fa+vDEvDs+LiDeArtpLiisgpae++++ y e++ +v++l+  +d                                                    
  KIR65298.1 203 FAVVDEVDSILIDEARTPLIISGPAEHSARWYGEFAGVVARLQPGKDgegdyevdyakrtiavtergvakvedrlgidnlyesvntplvgylnnaikak 301
                 ********************************************9999999************************************************ PP

                 .........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD 247 .........................................akegveieeesqtlatitlqnffrlYeklaGmtGTaeteaeefk 290
                                                          akegvei++e+qtlatitlqn+frlYekl+GmtGTa+tea ef+
  KIR65298.1 302 elykrdkdyivsdgevlivdeftgrilhgrrynegmhqaieAKEGVEIKQENQTLATITLQNYFRLYEKLSGMTGTAQTEAGEFN 386
                 ***********************************************************************************96 PP

>> SecA_SW  SecA Wing and Scaffold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.4   2.5   1.5e-67   3.9e-64       1     198 [.     616     830 ..     616     831 .. 0.95

  Alignments for each domain:
  == domain 1  score: 216.4 bits;  conditional E-value: 1.5e-67
                 -B-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHCHHHHHHHHHHHHHHHHHCHHHHS.SS.CSHHHHHHHHHCCCSS CS
     SecA_SW   1 piesklvsksienaQkkvEernfdiRknlleYDdVmnkQRkviYkqRrevLegesedlrerildliedvveeiveesvpeeekeewdleglleelkeef 99 
                 piesk+v+++i++aQ ++E++n +iRkn+l+YD+V+nkQR+viY++R +vL+ge  dl+++++++i+dvv ++v   +++  +e+wdle+l+++lk+ +
  KIR65298.1 616 PIESKMVTRQIKSAQAQIEGQNAEIRKNVLKYDEVLNKQRQVIYAERLRVLNGE--DLSDQVRNMIDDVVGAYVVGATSDGYAEDWDLEQLWASLKQLY 712
                 8**************************************************776..9*****************6666665457*************** PP

                 STSST.................HHHHHHHHHHHHHHHHHHHHC..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTSSSS-CCHHHHHHHHHH CS
     SecA_SW 100 svele.................elaeellekaekayekkeeei..ellrelervvlLevlDkaWkehLdamdeLregiglrgygqkdPlqeYkkegfel 179
                 +v ++                  l  +l ++a++ay+++ee++  + +reler+vlL+v+D++W+ehL++md+L+egi+lr+y+q+dP++eY++egf++
  KIR65298.1 713 PVGVTldeleeelgsragmdqdFLLARLKDDAHAAYDRREEQLgtDGTRELERMVLLQVIDRKWREHLYEMDYLQEGISLRAYAQRDPVVEYQREGFDM 811
                 *999999***********9998888999999************8766**************************************************** PP

                 HHHHHHHHHHHHHHHCCCT CS
     SecA_SW 180 Feemlarikeevvkkllkv 198
                 F +m++ ikee+v +l+++
  KIR65298.1 812 FATMMDGIKEETVGFLYNL 830
                 **************99875 PP

>> SecA_PP_bind  SecA preprotein cross-linking domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.1   2.1e-37   5.4e-34       4     111 .]     232     342 ..     229     342 .. 0.94

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 2.1e-37
                   HHHHHHHHHHCCCHTTC....CECCCTTTSEEEESHHHHHHHHHCCT-SSSTTSCCHCCHHHHHHHHHHHHHCSTTTTTEEECTTCEEEBSTTTSSE CS
  SecA_PP_bind   4 elyekanklvkklkeee....dyevdekkktveltekGvekvekllkvkeelydeenlelvhhvnqaLkAhtlferdvdYivkdgeviivDeftGRl 96 
                   ++y +++ +v++l+  +    dyevd  k+t+++te+Gv+kve+ l++ ++ly++ n+ lv ++n+a+kA++l++rd+dYiv+dgev+ivDeftGR+
    KIR65298.1 232 RWYGEFAGVVARLQPGKdgegDYEVDYAKRTIAVTERGVAKVEDRLGI-DNLYESVNTPLVGYLNNAIKAKELYKRDKDYIVSDGEVLIVDEFTGRI 327
                   677888888888888666667***************************.************************************************ PP

                   BTS--SSTTHHHHHH CS
  SecA_PP_bind  97 megrrysdGLhqaie 111
                   ++grry++G+hqaie
    KIR65298.1 328 LHGRRYNEGMHQAIE 342
                   **************8 PP

>> SEC-C  SEC-C motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   7.6   4.9e-13   1.2e-09       1      18 [.     949     966 ..     949     967 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 4.9e-13
       SEC-C   1 RNdpCPCGSGkKYKkCCg 18 
                 RN+pCPCGSG+KYK+C+g
  KIR65298.1 949 RNAPCPCGSGRKYKRCHG 966
                 9****************9 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.3e-06     0.011      18     134 ..      97     213 ..      85     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.3e-06
                 EEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEH.....HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxx RF
        DEAD  18 lvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtp.....grlddl 111
                 +++++TG GKTl  +++v+ +       +g+ + +v+    La+  +  + ++ ++++l+v +++ + +a++ +++   ++di++gt      +     
  KIR65298.1  97 IAEMKTGEGKTLTSVMAVYLNA-----LSGKGVHVVTVNDYLAQRDAAWMGRVHEFLGLTVGVVLPNRPASEHRAAY--ECDITYGTNnefgfD----Y 184
                 6889*********999999444.....56767778888899999999999999999******999999998877777..9********444333....4 PP

                 H......HCTSSHCTTEEEEEEETHHHHH CS
                 x......xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 112 l......stgklnlsqvrflVlDEadrll 134
                 l      s+ +l  +  +f V+DE+d +l
  KIR65298.1 185 LrdnmawSKDELVQRGHNFAVVDEVDSIL 213
                 45555888888999999*********987 PP

>> Lge1  Transcriptional regulatory protein LGE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.69   1.8e+03      54      71 .]      44      62 ..      18      62 .. 0.87
   2 ?   12.0   0.1   6.9e-05      0.18      21      67 ..     622     671 ..     606     673 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.69
        Lge1 54 erdaLrvqLtq.EkLdefl 71
                 +d++r+ L   E Ld++l
  KIR65298.1 44 LTDQYRERLADgETLDDLL 62
                5799999999999999986 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 6.9e-05
        Lge1  21 klkeiesldkqleelklkvlkleleldlleeqierdaLrvqLtq...EkL 67 
                 +++ i+s++ q+e +++++ k+ l +d  ++++++ ++ + L+    E+L
  KIR65298.1 622 VTRQIKSAQAQIEGQNAEIRKNVLKYDEVLNKQRQVIYAERLRVlngEDL 671
                 6899***********************************99987666766 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00017      0.44       6      82 ..     422     497 ..     417     498 .. 0.83
   2 ?    0.1   0.6      0.38   9.8e+02      96     111 .]     563     578 ..     554     578 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
                 HHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTS CS
  Helicase_C   6 llell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidi 82 
                 ++e + ++++ g+ +l+ + ++++ e ++ ll+++gi   vl+++  ++e e + ++ +kg   v +at++a+rG di
  KIR65298.1 422 VVEDIaERHQAGQPVLVGTVSVENSEIISQLLRRRGIPHSVLNAKFHAREAEIVAQAGRKGA--VTVATNMAGRGTDI 497
                 44444467778888888888999887778888999***************999999998888..99**********98 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.38
                 SHHHHHHHHTTSSSTT CS
  Helicase_C  96 nvtsyiqriGRtgRag 111
                 + +  +q +GR+gR g
  KIR65298.1 563 SRRIDNQLRGRAGRQG 578
                 566789********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (972 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.83u 0.26s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 6275.29
//
Query:       KIR65299.1  [L=200]
Description: hypothetical protein TK50_07515 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1591.89
//
Query:       KIR65300.1  [L=75]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-13   51.1   0.1    1.7e-13   50.5   0.1    1.2  1  HTH_17      Helix-turn-helix domain
  ------ inclusion threshold ------
      0.013   15.6   0.0      0.023   14.9   0.0    1.5  1  AbiEi_4     Transcriptional regulator, AbiEi antitoxin
      0.046   13.5   0.0       0.11   12.3   0.0    1.6  1  HTH_23      Homeodomain-like domain
      0.052   13.9   0.0      0.054   13.8   0.0    1.0  1  Tom37       Outer mitochondrial membrane transport complex pr
      0.071   12.9   0.0       0.12   12.3   0.0    1.3  1  Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.1   4.8e-17   1.7e-13       5      50 ..       9      56 ..       6      57 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 4.8e-17
      HTH_17  5 eEaAelLgvsrstvyrlirrgelpaakiGrr..wriprsdleewlekr 50
                +++A+ L+vs+s vy ++r+gelpa kiG+r  wr+ r+ lee+++++
  KIR65300.1  9 SDVAAELNVSDSQVYHMVRSGELPAIKIGGRgqWRVERARLEEYIQRK 56
                69*************************999999************986 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   6.3e-06     0.023      17      38 ..       9      31 ..       4      43 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.3e-06
     AbiEi_4 17 relea.aGispsalrrLvrkGwL 38
                ++++a +++s+s+++ +vr+G+L
  KIR65300.1  9 SDVAAeLNVSDSQVYHMVRSGEL 31
                799999***************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     3e-05      0.11      21      39 ..       9      27 ..       6      28 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3e-05
      HTH_23 21 reIAreLgvsrrTvyrwlk 39
                +++A+eL+vs ++vy+ ++
  KIR65300.1  9 SDVAAELNVSDSQVYHMVR 27
                79*************9876 PP

>> Tom37  Outer mitochondrial membrane transport complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.5e-05     0.054       8      58 ..       8      60 ..       4      73 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-05
       Tom37  8 lkllalapfevvessnpslsptgeLPaLkdge.gtwisgfdnIveylrkks..e 58
                l+  a a+++v +s+   ++ +geLPa+k g+ g+w  +  +  ey+++k+  +
  KIR65300.1  8 LSDVA-AELNVSDSQVYHMVRSGELPAIKIGGrGQWRVERARLEEYIQRKYaeT 60
                44344.4899********************998999999999999999986431 PP

>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.2e-05      0.12       2      38 ..       4      39 ..       3      40 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.2e-05
  Phage_AlpA  2 rilrlreVeqktglsrstiYrlikdgeFPkkvkLGvr 38
                r+l l +V++ +  s s++Y +++ ge P ++k+G+r
  KIR65300.1  4 RFLLLSDVAAELNVSDSQVYHMVRSGELP-AIKIGGR 39
                89999**********************99.5778776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 566.18
//
Query:       KIR65301.1  [L=169]
Description: hypothetical protein TK50_07525 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1152.74
//
Query:       KIR65302.1  [L=352]
Description: hypothetical protein TK50_07530 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.32   10.9   2.2       0.87    9.5   0.0    2.3  3  Myc_target_1  Myc target protein 1


Domain annotation for each model (and alignments):
>> Myc_target_1  Myc target protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2     0.029   5.3e+02      12      48 ..     105     141 ..      98     156 .. 0.72
   2 ?   -3.9   0.1      0.61   1.1e+04      31      42 ..     176     187 ..     174     193 .. 0.72
   3 ?    9.5   0.0   4.9e-05      0.87      25      49 ..     218     242 ..     204     249 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.029
  Myc_target_1  12 ilesfdledlilaFcvSmvvGLllgaliyvlltwlsr 48 
                   +l   +++  +l F+v    GLl+g    v++   + 
    KIR65302.1 105 LLARRGVDRATLRFVVATGAGLLVGLAAAVVINLTYF 141
                   5566678899999**********99665555544444 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 0.61
  Myc_target_1  31 vGLllgaliyvl 42 
                   v   lgal++v+
    KIR65302.1 176 VAAALGALVFVV 187
                   666799999986 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 4.9e-05
  Myc_target_1  25 FcvSmvvGLllgaliyvlltwlsrr 49 
                    + S++ GLl g l ++ ltw+ rr
    KIR65302.1 218 RTESLLAGLLAGLLAFAYLTWARRR 242
                   56699****************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.48
# Mc/sec: 2211.83
//
Query:       KIR65303.1  [L=542]
Description: 1-pyrroline-5-carboxylate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-96  322.5   0.0    4.2e-96  322.2   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.2   0.0  2.4e-100   4.2e-96       7     458 ..      56     522 ..      50     526 .. 0.93

  Alignments for each domain:
  == domain 1  score: 322.2 bits;  conditional E-value: 2.4e-100
                 SEEEEEETT.TCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH.HTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHH CS
      Aldedh   7 etievinPa.tgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlle.erkeelaeletletGkplaeara.eveeaidvlryyae 102
                 + i+v++P+ + +v++ + +at +d++aavaaAk+a + w++lp++eRa+i+ +aa+ll+   ++ l ++ +l + k+  +a+     e id+lr+ + 
  KIR65303.1  56 DPIDVVQPHrHAHVLGVTGHATHDDARAAVAAAKAAAPMWRALPFAERAAIFLRAAELLAgPWRDTLNAATMLGQSKTAVQAEIdSACELIDFLRFNVF 154
                 4599*****8888899999*****************************************6789********************6677*********** PP

                 HHHHHSEEEEEE.CTTEEEEEEEEE-.SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHH CS
      Aldedh 103 laeklegevlps.segklalvrrePl.GvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgea 199
                  a+ l +e  p  s+g  + + ++Pl G+v a+tP+Nf ++      apal+ GNtvv+KP ++  + a   ++lfe+aglP+gv+n+vtg+g+ev++ 
  KIR65303.1 155 FARGLLEEQ-PLsSPGVWNRFDHRPLeGFVYAVTPFNFTAIAGNLPSAPALL-GNTVVWKPGPTQQFAAHFTMRLFEAAGLPPGVINMVTGRGEEVSDV 251
                 ****77765.45469************************************9.********************************************** PP

                 HHH-TTESEEEEES-HHHHHHHHHHHHCTT......SEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHH.HHHHHHH CS
      Aldedh 200 lvehpevdkvsftGstevgrkiakaaaknl......krvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiyde.fveklve 291
                 ++++p+++ ++ftGst+v +++ ++ ++n+       r++ E+GGk+ ++ +++aD+d+  +a+++ga+ ++GQ+C+aasr++v++s+++  ++++l++
  KIR65303.1 252 VLADPDLAGIHFTGSTKVFQHLWRTVGENIhryrgyPRLVGETGGKDFVVAHASADVDALHTALIRGAYEYQGQKCSAASRAYVPRSLWEGgLRDRLAA 350
                 ***************************99544445599****************************************************99******* PP

                 HHHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHT.TSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESS..HHHHH CS
      Aldedh 292 aakklkvgdpldedtdvGPliseaqlekvekyveeakee.gaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkd..eeeai 387
                 +a +l+ gd  d ++  G++i+++++++ ++ +e    +  +++l Gg   +a+++ g+fv+Pt+++  +  ++ +++E+FGP+l v  f+d  +++++
  KIR65303.1 351 TADSLTYGDVTDFTNFGGAVIDARAFDRHTAALELISGDpSCTVLAGG---TADDSVGWFVRPTLFECSDAAHETFTTEYFGPILGVHVFDDarFDDVV 446
                 ************9*******************99876542899999**...899*************************************6569**** PP

                 HHHHS.SSEESEEEEE-SBHHHHHHHHHHS..-SSEEEESSSST--TTT.SEB--CGGGEES-BSH.HHHHHHTEE CS
      Aldedh 388 eiaNd.teyGLaagvftkdleraervaerl..eaGnvyiNdsttgaaea.lpfgGvkqSglGregg.kegleeyte 458
                 + a +  +y+L++++f++d + +  vae++   aGn yiNd+ tga+   +pfgG ++Sg+++++g  + l +++ 
  KIR65303.1 447 AQAESiAPYALTGSIFATDRRVVDAVAEKMryAAGNFYINDKPTGAVVGqQPFGGARASGTNDKAGsWHNLVRWMS 522
                 99998469*********************96679***************9************88883455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3513.10
//
Query:       KIR65304.1  [L=373]
Description: peptide chain release factor 2 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-56  189.6   1.1    6.4e-56  189.3   0.1    1.7  2  PCRF          PCRF domain
    2.8e-37  127.2   0.1    2.8e-37  127.2   0.1    1.7  2  RF-1          RF-1 domain
     0.0019   18.4   1.3     0.0019   18.4   1.3    3.8  4  ABC_tran_CTD  ABC transporter C-terminal domain
  ------ inclusion threshold ------
      0.058   14.0   0.1        5.8    7.6   0.0    2.7  3  ACT_4         ACT domain
      0.098   12.5   0.0       0.16   11.8   0.0    1.3  1  MIR           MIR domain


Domain annotation for each model (and alignments):
>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.3   0.1   1.8e-59   6.4e-56       3     193 .]      31     219 ..      29     219 .. 0.96
   2 ?   -2.6   0.1       1.1   4.1e+03      71      93 ..     276     297 ..     268     314 .. 0.45

  Alignments for each domain:
  == domain 1  score: 189.3 bits;  conditional E-value: 1.8e-59
                 HHHTTTTTST.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT......-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSSTTS CS
        PCRF   3 eeleelekklsdpevwedqekakklskelaeleeivealeeleealedleeakelle..edeelaelaeeeleelekeleeleeelkklLlpkdendek 99 
                 e  ++le+++s+p++w+dq+ka++++++l+ ++  +++l +l+++l+d++ + el+e  +d+ + +++e e+ +l+k+++++  e+++lL+  +e+d++
  KIR65304.1  31 EDKARLEEQASAPDLWDDQAKAQQVTSQLSYVNGEINKLGSLRSRLDDARVLLELAEaeDDPGVLAEVETEIGALTKSIQDM--EVRTLLS--GEYDSR 125
                 556799*********************************************999995668889999999*************..*******..****** PP

                 EEEEEEEE-SSTHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEESSS.SEEEEEEEEESTTHHHHHGGG-EEEEEEEE-TTSSS--EEEEEEEE CS
        PCRF 100 naileiraGaGGdeaalfaedLlrmYtryaerkgwkvevldaseeeagGikevtleiegegaYgkLkfEsGvHRvqRvpetesqgrihTStatV 193
                 +a++ iraGaGG +aa+fae+LlrmY r+aer+g+ +ev+++s++e  G+k++t++++ ++aYg+L +EsG+HR++R++++++qgr++TS+a V
  KIR65304.1 126 EALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPTEVYETSYAEEAGLKSATFAVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGV 219
                 ********************************************6555********************************************98 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.1
                 GTHHHHHHHHHH..HHHHHT-.. CS
        PCRF  71 eleelekeleeleeelkklLlpk 93 
                 e ++l+++ ++l + l+  Ll +
  KIR65304.1 276 EKSQLQNKASAL-RVLQARLLER 297
                 333333333333.2222222222 PP

>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       2.3   8.4e+03      79      88 ..      29      38 ..       8      58 .. 0.45
   2 !  127.2   0.1   7.9e-41   2.8e-37       4     116 .]     229     336 ..     226     336 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.3
                CCCHTTTTT- CS
        RF-1 79 eeekkrrvkk 88
                 +e+k+r+++
  KIR65304.1 29 LHEDKARLEE 38
                2333333333 PP

  == domain 2  score: 127.2 bits;  conditional E-value: 7.9e-41
                 C.CE--GGGEEEEEE---SSSSSSGCSSSCEEEEEETTTTEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCHTTTTT-.S.-S---S--EC CS
        RF-1   4 e.ieidekdleidtfrssGaGGQnVNktesaVrlthlptgvivvecqeeRsqekNrekAlerLkaklkekeleeekeeekkrrvkkekkkigtgsseki 101
                 + i+i+e+++++d++rssG+GGQ+VN+t+saVrlth+ptg ivv+cq+e+sq +N++ Al++L+a+l e+  ++++e++k + +k   +  ++g+  ++
  KIR65304.1 229 DhIDIPENEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTG-IVVTCQNEKSQLQNKASALRVLQARLLER--KRQEEQAKLDGLKT-DAAGSWGD--QM 321
                 3499************************************.8*************************665..44444444444333.33456777..** PP

                 EEEECGCTTEEEETT CS
        RF-1 102 Rtynkkpqsrvkdhr 116
                 R+y+++p+++vkd+r
  KIR65304.1 322 RSYVLHPYQMVKDLR 336
                 *************98 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.3   5.2e-07    0.0019      16      59 ..      25      68 ..       6      71 .. 0.85
   2 ?    3.4   0.2     0.026        92       9      35 ..      87     113 ..      82     130 .. 0.74
   3 ?   -2.7   0.2       2.1   7.4e+03      56      66 ..     146     156 ..     140     156 .. 0.81
   4 ?   -1.8   0.4       1.1   3.9e+03      51      51 ..     295     295 ..     273     311 .. 0.49

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 5.2e-07
  ABC_tran_CTD 16 eIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLee 59
                   I++L e++a le++ ++p+l  d++k ++++ +l  ++ e+++
    KIR65304.1 25 NIDRLHEDKARLEEQASAPDLWDDQAKAQQVTSQLSYVNGEINK 68
                  59*********************************999998876 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.026
  ABC_tran_CTD   9 eleeleaeIeaLEeeiaeleaeladpe 35 
                   e e  +  +++ E+ei +l++ ++d e
    KIR65304.1  87 EAEDDPGVLAEVETEIGALTKSIQDME 113
                   455556667777888888877777765 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.1
  ABC_tran_CTD  56 eLeelyerWee 66 
                    L ++y rW e
    KIR65304.1 146 MLLRMYLRWAE 156
                   58899****87 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.1
  ABC_tran_CTD  51 e 51 
                    
    KIR65304.1 295 L 295
                   1 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.034   1.2e+02      59      80 .]       7      28 ..       5      28 .. 0.93
   2 ?    7.6   0.0    0.0016       5.8      12      41 ..      87     116 ..      85     123 .. 0.93
   3 ?   -3.5   0.0       4.6   1.6e+04       7      22 ..     267     282 ..     264     296 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.034
       ACT_4 59 vehLsrviakLraipgVisVeR 80
                +e+L+++ a Lr+i+ V ++ R
  KIR65304.1  7 AEQLKELDATLRNIEAVLNIDR 28
                589****************998 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0016
       ACT_4  12 eaedrkglLaditqviseekanivsvnakt 41 
                 eaed++g+La++ + i + + +i++++++t
  KIR65304.1  87 EAEDDPGVLAEVETEIGALTKSIQDMEVRT 116
                 79************************9987 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 4.6
       ACT_4   7 vrleveaedrkglLad 22 
                 + + v+++++k  L++
  KIR65304.1 267 TGIVVTCQNEKSQLQN 282
                 6788888888776665 PP

>> MIR  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.5e-05      0.16     125     161 ..     244     280 ..     217     306 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.5e-05
         MIR 125 sttgmksaklvprdsyvrlqHvvtgcwLhstsvklkk 161
                  ++g + +++ + ds vrl H+ tg +++ ++ k + 
  KIR65304.1 244 RSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQL 280
                 567899999*********************9998543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2600.56
//
Query:       KIR65305.1  [L=226]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-36  124.1   0.0    8.2e-36  123.5   0.0    1.3  1  ABC_tran       ABC transporter
    8.4e-10   38.9   0.4    0.00011   22.2   0.0    2.1  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    4.3e-06   27.2   0.0    9.2e-06   26.1   0.0    1.7  1  AAA_16         AAA ATPase domain
    1.3e-05   24.7   0.0    0.00074   19.0   0.0    2.1  1  SMC_N          RecF/RecN/SMC N terminal domain
      2e-05   24.2   0.0    3.5e-05   23.5   0.0    1.4  1  AAA_29         P-loop containing region of AAA domain
    3.1e-05   23.8   0.0     0.0046   16.7   0.1    2.0  2  AAA_15         AAA ATPase domain
    5.1e-05   23.5   0.0     0.0001   22.5   0.0    1.5  1  AAA_33         AAA domain
    0.00015   22.0   0.0     0.0012   19.1   0.0    2.0  1  AAA_22         AAA domain
    0.00021   21.2   0.1     0.0005   20.0   0.0    1.6  2  RsgA_GTPase    RsgA GTPase
     0.0019   17.8   0.0      0.067   12.8   0.0    2.2  2  AAA_25         AAA domain
     0.0021   18.1   0.0      0.009   16.0   0.0    2.0  2  AAA_5          AAA domain (dynein-related subfamily)
     0.0026   17.3   0.0     0.0043   16.6   0.0    1.3  1  AAA_7          P-loop containing dynein motor region
     0.0045   17.4   0.0      0.008   16.6   0.0    1.5  1  RNA_helicase   RNA helicase
     0.0083   15.9   0.0      0.049   13.4   0.0    2.0  2  AAA_30         AAA domain
  ------ inclusion threshold ------
      0.011   14.7   0.0      0.019   13.9   0.0    1.4  1  AAA_10         AAA-like domain
      0.011   16.2   0.1       0.04   14.3   0.1    2.2  1  AAA            ATPase family associated with various cellular
      0.012   15.2   0.1       0.13   11.9   0.0    2.2  3  cobW           CobW/HypB/UreG, nucleotide-binding domain
      0.013   15.5   0.0      0.027   14.4   0.0    1.6  2  Rad17          Rad17 P-loop domain
      0.013   14.8   0.0      0.032   13.5   0.0    1.6  2  Zeta_toxin     Zeta toxin
      0.015   14.5   0.0      0.023   13.9   0.0    1.2  1  PIF1           PIF1-like helicase
      0.017   15.6   0.0      0.062   13.9   0.0    1.8  2  AAA_18         AAA domain
      0.022   13.7   0.0      0.034   13.0   0.0    1.3  1  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
      0.022   13.8   0.2      0.043   12.9   0.0    1.5  2  T2SSE          Type II/IV secretion system protein
      0.025   14.7   0.1       0.05   13.7   0.1    1.4  1  DUF87          Helicase HerA, central domain
      0.032   14.7   0.0      0.041   14.4   0.0    1.3  1  AAA_23         AAA domain
      0.034   13.3   0.0      0.056   12.6   0.0    1.3  1  DUF815         Protein of unknown function (DUF815)
      0.037   14.1   0.1      0.055   13.6   0.1    1.7  1  MMR_HSR1       50S ribosome-binding GTPase
      0.042   13.6   0.3       0.69    9.6   0.0    2.3  2  AAA_24         AAA domain
      0.044   13.1   0.0      0.095   12.0   0.0    1.5  2  Gtr1_RagA      Gtr1/RagA G protein conserved region
      0.058   12.8   0.0        0.1   12.0   0.0    1.4  1  Mg_chelatase   Magnesium chelatase, subunit ChlI
      0.077   12.7   0.0       0.14   11.8   0.0    1.4  1  Guanylate_kin  Guanylate kinase
       0.15   12.0   0.1       0.89    9.4   0.0    2.1  2  MobB           Molybdopterin guanine dinucleotide synthesis p
        0.2   11.2   0.9        2.2    7.9   0.9    2.2  1  Zot            Zonular occludens toxin (Zot)
       0.25   10.5   0.8       0.37    9.9   0.0    1.6  2  NB-ARC         NB-ARC domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.0   1.6e-38   8.2e-36       1     136 [.      19     166 ..      19     167 .. 0.94

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 1.6e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqepqlfpeltvren.............esde 83 
                 l+nvs+++++ge v ++G++G+GKSt++kll+++++p++G++ +++kd+++    +++++r++ig+++q+ +l p+ t++en              +++
  KIR65305.1  19 LDNVSVSIEKGEFVFFIGPSGSGKSTIIKLLLHEVTPNKGRVIVNSKDVTSmrsWKRPHFRRSIGCVFQDFRLLPNRTAYENvafalevigktkaVARR 117
                 79***********************************************999999**********************************9987655555 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  + ++l+ +gl +++++      ++LSgG++qrva+ara++++p +ll+DEpt
  KIR65305.1 118 VVPEVLELVGLGGKEHRYP----HELSGGEQQRVAVARAFVNRPLILLADEPT 166
                 5999999999999777777....*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   2.6e-05     0.014       1      20 [.      31      50 ..      31      78 .. 0.83
   2 !   22.2   0.0     2e-07   0.00011     231     303 .]     133     202 ..      86     202 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.6e-05
      AAA_21  1 lnvliGpNgsGKSnLLdald 20
                + ++iGp gsGKS+++++l 
  KIR65305.1 31 FVFFIGPSGSGKSTIIKLLL 50
                5789**************93 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 2e-07
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpllld 303
                  + ++elS G ++  a++ a+  ++    +ll DEp  +L+P    ++++ll++ +r+g+ v+++TH+  +++
  KIR65305.1 133 HRYPHELSGGEQQRVAVARAFVNRP---LILLADEPTGNLDPDTSIEIMRLLDRINRTGTTVVMVTHDSNIVN 202
                 5678899999999989999999888...79999*******************999999**********99986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.7e-08   9.2e-06      22      89 ..      27      96 ..      16     198 .. 0.62

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.7e-08
      AAA_16 22 grpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesa...ipysalaqalareellrqlldea 89
                  +e v+++G+sG+GKs++++ ll++++ ++g + ++ k + + ++    ++   + +  + + +r l +++
  KIR65305.1 27 EKGEFVFFIGPSGSGKSTIIKLLLHEVTPNKGRViVNSKDVTSMRSwkrPHFRRSIGCV-F-QDFRLLPNRT 96
                44589*************************87774555544442223322233344444.3.5555555553 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.4e-06   0.00074      24     210 ..      29     210 ..      18     217 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.4e-06
                 SSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkke 122
                  +f + +Gp GSGKs ++  +l+    ++ + +   + +d+ + ++ k+   + ++  +f++     + ++   ++   ++  g+++    +   +  e
  KIR65305.1  29 GEFVFFIGPSGSGKSTIIKLLLHEVTPNKGRVIV--NSKDVTSMRSWKRPHFRRSIGCVFQDFRLL-PNRTAYENVAFALEVIGKTKAVARRVVPEVLE 124
                 359999*************999988876664443..334555544555555566677777665544.33333333444444444444444444444467 PP

                 HHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEE.CTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-.SCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxx RF
       SMC_N 123 vsellesagiskelLSgGektLvalaLlfAiqkvkpaplyll.DeidaaLDeknvkkvaellkekskn.aQfivislreemleka.dklvg 210
                 +  l  +++ ++++LSgGe++ va+a  f       +pl ll De   +LD     ++ +ll++ + + + ++++++++++++++ +++v 
  KIR65305.1 125 LVGLGGKEHRYPHELSGGEQQRVAVARAF-----VNRPLILLaDEPTGNLDPDTSIEIMRLLDRINRTgTTVVMVTHDSNIVNQMrRRVVE 210
                 7777777777777********99998665.....455555544*******************976555499999**********9445555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   6.6e-08   3.5e-05      13      50 ..      20      57 ..      17      65 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 6.6e-08
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                d+ +++i+  ++++++GpsGsGKST++  +    +p+k
  KIR65305.1 20 DNVSVSIEKGEFVFFIGPSGSGKSTIIKLLLHEVTPNK 57
                67788998666***************965555555555 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   8.8e-06    0.0046      14      43 ..      19      49 ..      18      72 .. 0.88
   2 ?    5.2   0.0     0.028        15     323     369 .]     156     201 ..     146     201 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 8.8e-06
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsileal 43
                l++v++++++  + ++iG+ +sGKS+i+++l
  KIR65305.1 19 LDNVSVSIEKGeFVFFIGPSGSGKSTIIKLL 49
                778888888888*****************99 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.028
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitTHSphii 369
                 ++ ill +EP  +L p+   ++++ll ++ +++   v++ TH + i+
  KIR65305.1 156 RPLILLADEPTGNLDPDTSIEIMRLLDRINRTGT-TVVMVTHDSNIV 201
                 789*************************999996.9********997 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     2e-07    0.0001       2     121 ..      32     210 ..      31     225 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2e-07
      AAA_33   2 vllvGlpGsGKstlaerllkklg....avllssdt......................................................lrrrlfgtdq 42 
                 v+++G++GsGKst ++ ll + +     v+++s +                                                      +   l+g + 
  KIR65305.1  32 VFFIGPSGSGKSTIIKLLLHEVTpnkgRVIVNSKDvtsmrswkrphfrrsigcvfqdfrllpnrtayenvafalevigktkavarrvvpEVLELVGLGG 130
                 89***************9877777888777777666999999999999999999999999998888888888888888888844444444444444666 PP

      AAA_33  43 qsktdytrvldrlyqilnelarkalsagrnvildat..nlsrrerarflklarrlgvpvrivvvetdeetlkeRlakRaan 121
                 +  +++ +++    q++ ++ar    +   +++d +  nl++++  ++++l+ r++   + vv+ t ++ +  + ++R  +
  KIR65305.1 131 KEHRYPHELSGGEQQRV-AVARAFVNRPLILLADEPtgNLDPDTSIEIMRLLDRINRTGTTVVMVTHDSNIVNQMRRRVVE 210
                 66667777777777777.777666666666666776669999999999999999999989999999998888888888665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.3e-06    0.0012       5      38 ..      29      93 ..      26     204 .. 0.52

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.3e-06
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaee...................................e 38
                  +++ +G+sG+GK+t ++ ll++ +      +                                   +
  KIR65305.1 29 GEFVFFIGPSGSGKSTIIKLLLHEVTPN----KgrvivnskdvtsmrswkrphfrrsigcvfqdfrllP 93
                678999*****************98532....1334566666666666655555544444444444440 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   9.5e-07    0.0005      89     127 ..      18      57 ..       3      68 .. 0.79
   2 ?   -2.3   0.0         7   3.7e+03      74      85 ..     186     197 ..     169     216 .. 0.48

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 9.5e-07
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpelelkt 127
                  +l++++  +++ ++++++G+SG GKSt+i+ ll e + + 
   KIR65305.1  18 SLDNVSVSIEKgEFVFFIGPSGSGKSTIIKLLLHEVTPNK 57 
                  66777777777799******************99876555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7
                  HTTSEEEE--TT CS
  RsgA_GTPase  74 algyevllvsak 85 
                  ++g++v++v  +
   KIR65305.1 186 RTGTTVVMVTHD 197
                  333333333222 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00013     0.067      29      60 ..      25      58 ..       5      73 .. 0.81
   2 ?    2.8   0.0      0.14        73     168     188 ..     177     196 ..     162     199 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
      AAA_25 29 llpagelallaGapgtGKttlaldlalava..tG 60
                 + +ge++ ++G++g+GK+t+   l ++v+  +G
  KIR65305.1 25 SIEKGEFVFFIGPSGSGKSTIIKLLLHEVTpnKG 58
                5789*****************9999988885544 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.14
      AAA_25 168 lvealeriarrtgaavllvhH 188
                 ++  l+ri  rtg +v++v H
  KIR65305.1 177 IMRLLDRI-NRTGTTVVMVTH 196
                 55668888.8*********** PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.7e-05     0.009       2      38 ..      32      69 ..      31      74 .. 0.89
   2 ?   -1.2   0.0       3.6   1.9e+03      52      64 ..     193     205 ..     170     220 .. 0.49

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.7e-05
                EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--H CS
       AAA_5  2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtte 38
                v+ +Gp+G+gKs++++ l++ +  ++  ++ +++d t+
  KIR65305.1 32 VFFIGPSGSGKSTIIKLLLHEVtPNKGRVIVNSKDVTS 69
                799***************99988888888888888875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.6
                 .....-------- CS
       AAA_5  52 tslvdsplvraar 64 
                  + +ds +v+++r
  KIR65305.1 193 MVTHDSNIVNQMR 205
                 2334444444444 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   8.1e-06    0.0043      29      62 ..      25      58 ..      21      73 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 8.1e-06
       AAA_7 29 llknkkpvllvGptGtGKtviikdllkkldkeky 62
                 ++++  v+++Gp+G+GK++iik ll+++ ++k 
  KIR65305.1 25 SIEKGEFVFFIGPSGSGKSTIIKLLLHEVTPNKG 58
                5788899******************999986664 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.5e-05     0.008       1      50 [.      32      76 ..      32     115 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.5e-05
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgq 50
                  +++ Gpsg GKSt++k L ++++     ++k++v++++++ + + +++++
    KIR65305.1 32 VFFIGPSGSGKSTIIKLLLHEVT-----PNKGRVIVNSKDVTSMRSWKRP 76
                  6899*************999888.....8888888888877777766654 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   9.2e-05     0.049      18      51 ..      29      62 ..      21      71 .. 0.79
   2 ?   -0.1   0.0       1.2   6.5e+02     105     122 ..     177     194 ..     137     215 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.2e-05
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrvig 51
                  +++  Gp G+GK+t++k l + ++ ++grvi+
  KIR65305.1 29 GEFVFFIGPSGSGKSTIIKLLLHEVTPNKGRVIV 62
                3488999*************97766666667776 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.2
      AAA_30 105 laallkaaekagakvilv 122
                 + +ll++++++g++v++v
  KIR65305.1 177 IMRLLDRINRTGTTVVMV 194
                 456666666666666666 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.5e-05     0.019      23      58 ..      31      65 ..      16      97 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.5e-05
      AAA_10 23 asliiGdlGnGKSvlakllvlyisllggkaliiDpk 58
                 +++iG+ G GKS ++kll + ++  +g++++   k
  KIR65305.1 31 FVFFIGPSGSGKSTIIKLLLHEVTPNKGRVIV-NSK 65
                469********************999999764.444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   7.6e-05      0.04       1      35 [.      32      68 ..      32     215 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.6e-05
                EEEESSTTSSHHHHHHHHHHHH..THEEEEEETTTCS CS
         AAA  1 vllyGppGtGKTllakavakel..gvefleisgsell 35
                v ++Gp G GK++++k + +e+  +   + ++ ++++
  KIR65305.1 32 VFFIGPSGSGKSTIIKLLLHEVtpNKGRVIVNSKDVT 68
                5799*****************8442223444444444 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00024      0.13       5      35 ..      34      64 ..      31      71 .. 0.88
   2 ?   -1.3   0.0       2.7   1.4e+03      89     107 ..     164     182 ..     145     212 .. 0.56
   3 ?    0.2   0.0      0.93   4.9e+02      39      61 ..     194     216 ..     190     221 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00024
                EEESTTCCHHHHHHHHHCT--SS-EEEEESS CS
        cobW  5 ltGflGsGKTtLlnhllenraglklavivNe 35
                + G+ GsGK+t+++ ll++   +k  vivN 
  KIR65305.1 34 FIGPSGSGKSTIIKLLLHEVTPNKGRVIVNS 64
                6799*************************96 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.7
                 EECTTTTHHHHHTTSHHHH CS
        cobW  89 EttGlaePapvafteeelk 107
                 E tG+++P +++   + l 
  KIR65305.1 164 EPTGNLDPDTSIEIMRLLD 182
                 6777777777622222222 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.93
                 CHCCCCCCHCCCT.EEEETTTTE CS
        cobW  39 vsiDaellretgveivelenGci 61 
                 v +D++++++    +ve+e G i
  KIR65305.1 194 VTHDSNIVNQMRRRVVEIESGRI 216
                 789********999*****9976 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   5.1e-05     0.027      40      73 ..      24      57 ..       7     103 .. 0.73
   2 ?   -2.4   0.0       7.5     4e+03     132     172 ..     155     195 ..     147     205 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.1e-05
       Rad17 40 LesrkkriLLisGPsGCgkstvvkvLskelgikl 73
                +  +k + +   GPsG gkst++k L  e +++ 
  KIR65305.1 24 VSIEKGEFVFFIGPSGSGKSTIIKLLLHEVTPNK 57
                555566788899**************99987653 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 7.5
       Rad17 132 dkklilvedlPnkfyrdsdalrevirkylrsseal.plilvi 172
                 ++ lil+ d P   + d d+  e++r   r++++  ++++v 
  KIR65305.1 155 NRPLILLADEPTG-NLDPDTSIEIMRLLDRINRTGtTVVMVT 195
                 5667777777742.4455555555555555555541344443 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.1e-05     0.032      17      53 ..      30      66 ..      18      80 .. 0.81
   2 ?   -2.2   0.0         4   2.1e+03     125     174 ..     189     212 ..     170     220 .. 0.45

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.1e-05
  Zeta_toxin 17 klillgGqpGAGKselaellkdelerqgnvvrldpDd 53
                  ++  G +G+GKs++++ll  e++++++ v ++  d
  KIR65305.1 30 EFVFFIGPSGSGKSTIIKLLLHEVTPNKGRVIVNSKD 66
                66888899*****************888777776544 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4
  Zeta_toxin 125 evvvvavkkelSrlgvldRyeeevaegRlvpkeehdeafeglresveale 174
                                             +v +++  ++++++r+ v ++e
  KIR65305.1 189 TT--------------------------VVMVTHDSNIVNQMRRRVVEIE 212
                 33..........................3344444444444444444443 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.3e-05     0.023      13      55 ..      22      62 ..      13      76 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.3e-05
                H......HCTS-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEE CS
        PIF1 13 iieavlnekgklfFvtGsgGtgKtflwkallkklrsegkivla 55
                +  +v+ ekg+++F+ G +G+gK+ + k ll+ + +++  v++
  KIR65305.1 22 V--SVSIEKGEFVFFIGPSGSGKSTIIKLLLHEVTPNKGRVIV 62
                4..78889***********************999997666553 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   0.00012     0.062       1      21 [.      32      52 ..      32      98 .. 0.74
   2 ?   -0.9   0.0       4.2   2.2e+03      53      91 ..     170     205 ..     152     215 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00012
      AAA_18  1 IlltGtpGvGKttlakeLskr 21
                ++  G++G+GK+t+ k L  +
  KIR65305.1 32 VFFIGPSGSGKSTIIKLLLHE 52
                6889*************9433 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 4.2
      AAA_18  53 dedkldklldaleenssaleegknlvidghlaeleseaa 91 
                 d d   +++++l+++++    g ++v+  h ++ +  ++
  KIR65305.1 170 DPDTSIEIMRLLDRINR---TGTTVVMVTHDSNIVNQMR 205
                 55555677788888765...6777777777777665554 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.5e-05     0.034      18      55 ..      32      69 ..      18      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.5e-05
  TrwB_AAD_bind 18 ilivGttGsGKtqalekllrairargdraivlDltGaf 55
                   ++++G  GsGK++ ++ ll+++   + r+iv  +  + 
     KIR65305.1 32 VFFIGPSGSGKSTIIKLLLHEVTPNKGRVIVNSKDVTS 69
                   6789**************************97665555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.1e-05     0.043     125     161 ..      25      61 ..       7      67 .. 0.84
   2 ?   -3.7   0.0       9.3   4.9e+03     143     164 ..     190     212 ..     183     217 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.1e-05
       T2SSE 125 avrerglilvsGgTgsGKttllyallkeinksderiv 161
                 ++++   + + G+ gsGK+t++  ll+e+  ++ r++
  KIR65305.1  25 SIEKGEFVFFIGPSGSGKSTIIKLLLHEVTPNKGRVI 61 
                 55666677889******************99988876 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 9.3
       T2SSE 143 ttll.yallkeinksderivtvE 164
                 t+++     +++n+  +r+v +E
  KIR65305.1 190 TVVMvTHDSNIVNQMRRRVVEIE 212
                 44441233455555566666666 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   9.5e-05      0.05      30      57 ..      36      62 ..      32      62 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.5e-05
       DUF87 30 gsTGsGKSntvavLleellekkgatili 57
                g +GsGKS+ +++Ll+e+   +++++++
  KIR65305.1 36 GPSGSGKSTIIKLLLHEVT-PNKGRVIV 62
                779****************.88999987 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   7.8e-05     0.041      13      38 ..      22      48 ..      17     124 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.8e-05
      AAA_23 13 qeidFskg.ltlItGpNGaGKTTildA 38
                +++  +kg ++ ++Gp G+GK+Ti+  
  KIR65305.1 22 VSVSIEKGeFVFFIGPSGSGKSTIIKL 48
                55555554156789**********865 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00011     0.056      54      90 ..      30      65 ..      20      74 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
      DUF815 54 nnvLLwGarGtGKSslvkallneyaeegLrlieveke 90
                + v+++G  G+GKS+++k ll+e++ ++ r+i  + +
  KIR65305.1 30 EFVFFIGPSGSGKSTIIKLLLHEVTPNKGRVIV-NSK 65
                568899*******************99999884.434 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1    0.0001     0.055       2      29 ..      32      65 ..      31     212 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.0001
                EEEEESTTSSHHHHHHHHHTS......TEEESSS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge......kaivsdk 29
                v ++G + +GKSt+i+ l+ e      ++iv++k
  KIR65305.1 32 VFFIGPSGSGKSTIIKLLLHEvtpnkgRVIVNSK 65
                789***************9743222235555444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0013      0.69       6      27 ..      33      61 ..      29     104 .. 0.72
   2 ?    1.8   0.1      0.32   1.7e+02     110     132 ..     176     198 ..     172     213 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
      AAA_24  6 liyGpsgiGKTtlakel.......gpkpl 27
                + +Gpsg+GK+t++k l       + +++
  KIR65305.1 33 FFIGPSGSGKSTIIKLLlhevtpnKGRVI 61
                569************99777765444444 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.32
      AAA_24 110 efrrllkklqelrknvifiahek 132
                 e++rll++++ ++ +v+++ h  
  KIR65305.1 176 EIMRLLDRINRTGTTVVMVTHDS 198
                 7899***************9965 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00018     0.095       2      38 ..      32      68 ..      31      77 .. 0.89
   2 ?   -2.8   0.0       6.1   3.2e+03     107     131 ..     183     207 ..     159     221 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00018
   Gtr1_RagA  2 vLLmGksgsGKtsmrsiiFdnylardtlrlgatidve 38
                v+++G+sgsGK+++ + + ++++++  + +  + dv+
  KIR65305.1 32 VFFIGPSGSGKSTIIKLLLHEVTPNKGRVIVNSKDVT 68
                789**********************999888887776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.1
   Gtr1_RagA 107 qyspeakvfvlihKmDliqederee 131
                 ++++  +  v++    +i ++ r++
  KIR65305.1 183 RINRTGTTVVMVTHDSNIVNQMRRR 207
                 4444444334333333333333333 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00019       0.1      21      65 ..      28      72 ..      14      84 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00019
  Mg_chelatase 21 GgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvag 65
                   g  ++++Gp+GsGK+ ++k l   ++p + + +++++ ++s+ +
    KIR65305.1 28 KGEFVFFIGPSGSGKSTIIKLLLHEVTPNKGRVIVNSKDVTSMRS 72
                  556689**************9988888888888888888888766 PP

>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00027      0.14       5      34 ..      32      62 ..      28      72 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00027
                   EEEESTTTSSHHHHHHHHHHHSTTTEE.E-- CS
  Guanylate_kin  5 vvlvgpsgaGksslkkaLlselpekfg.vsv 34
                   v  +gpsg Gks+++k Ll+e   + g v+v
     KIR65305.1 32 VFFIGPSGSGKSTIIKLLLHEVTPNKGrVIV 62
                   6689****************98776664666 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0017      0.89       2      30 ..      32      60 ..      31      71 .. 0.87
   2 ?   -0.4   0.0       1.9   9.9e+02      17      38 ..     178     199 ..     174     207 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0017
        MobB  2 lgivgksgsGKTtLleklipelkarglrv 30
                + ++g sgsGK t+++ l++e++ ++ rv
  KIR65305.1 32 VFFIGPSGSGKSTIIKLLLHEVTPNKGRV 60
                6799*****************99887776 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.9
        MobB  17 eklipelkarglrvgtiKhahh 38 
                  +l+  +++ g +v ++ h+++
  KIR65305.1 178 MRLLDRINRTGTTVVMVTHDSN 199
                 6788888899999999988865 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.9    0.0042       2.2     104     141 ..     175     212 ..      30     219 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0042
         Zot 104 pevinaftehRhlgwDivlltqdiskihkevralaeka 141
                  e++  +++  + g ++v++t d ++++++ r+++e++
  KIR65305.1 175 IEIMRLLDRINRTGTTVVMVTHDSNIVNQMRRRVVEIE 212
                 4667888999999*****************99**9975 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00071      0.37      21      43 ..      30      52 ..      19      60 .. 0.84
   2 ?   -2.6   0.2       4.7   2.5e+03     131     150 ..     188     207 ..     178     219 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00071
                EEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 21 lvvalvGmgGvGKttlakqilnk 43
                 +v++ G  G+GK+t++k  l++
  KIR65305.1 30 EFVFFIGPSGSGKSTIIKLLLHE 52
                489*************9988776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.7
                 TSEEEEEESBCCCCCCS-S- CS
      NB-ARC 131 rlrvllTTRdeevanavsat 150
                 +  v++ T d ++ n++  +
  KIR65305.1 188 GTTVVMVTHDSNIVNQMRRR 207
                 56788888888888888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 1442.47
//
Query:       KIR65306.1  [L=291]
Description: cell division protein FtsY [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-25   88.9   2.4    3.7e-25   88.4   2.4    1.2  1  FtsX_ECD  FtsX extracellular domain
    8.7e-07   29.3   7.2    8.7e-07   29.3   7.2    2.9  3  FtsX      FtsX-like permease family
  ------ inclusion threshold ------
        3.3    7.5   8.5        1.1    9.1   1.7    2.6  3  IncD      Inclusion membrane protein D


Domain annotation for each model (and alignments):
>> FtsX_ECD  FtsX extracellular domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   2.4   6.2e-29   3.7e-25       1      96 []      56     148 ..      56     148 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 6.2e-29
    FtsX_ECD   1 vevsvflkddateeqiealeeklealpgVksvtfvskeealeefkeqlgednsellegltedeNpLpdsfevklkdpekleevaeelkklpgVeeV 96 
                 ++vs+flk+d+t++q+++le+kl++++ Vk+v +v+k+ea+++f+e+++ d ++l+ ++++d+  Lp+sf+++l +pe+++++ +++k+ +gV+e+
  KIR65306.1  56 IQVSIFLKSDVTDQQRTDLETKLKSDSLVKEVLYVNKDEAYKRFQEMYQ-DAPDLVTAVKPDQ--LPESFRLTLVNPEQYKSIYDQYKDTEGVDEI 148
                 69**********************************************9.8************..*****************************96 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.05     3e+02      24      46 ..      22      37 ..       8      67 .. 0.50
   2 ?    1.0   0.1       0.1   6.1e+02      68      90 ..     167     189 ..     142     194 .. 0.61
   3 !   29.3   7.2   1.5e-10   8.7e-07       1      89 [.     196     286 ..     196     291 .] 0.79

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.05
        FtsX 24 eillitlvalviGlglgllaaql 46
                        a++i l+++l ++ +
  KIR65306.1 22 I-------AMIITLAVSLTMLGV 37
                2.......222222222222222 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.1
        FtsX  68 tvliiivlllllallagllsisk 90 
                  ++++ ++++ +a l +++ +++
  KIR65306.1 167 NIALAGAIAMAIAALLLVANTIQ 189
                 44444444444444444455555 PP

  == domain 3  score: 29.3 bits;  conditional E-value: 1.5e-10
        FtsX   1 kreigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfs..selkisidlitvliiivlllllallagllsis 89 
                 +re+++++ +G++++ +   +++e+++ +l+++++Glg+++++  +l+d+ ls +++  s +++s  ++++ i+++++ l+  ++g++ ++
  KIR65306.1 196 RREVAVMKLVGASNWFIQAPFVLEAVVAGLIGSFLGLGALIALKFFLFDGSLSALQGlfSPVTWSDIFLMFPIMAGVGALVSAVTGWVTLR 286
                 79*************************************************9998765555555555555555555555555555666655 PP

>> IncD  Inclusion membrane protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.028   1.7e+02      36      61 ..      16      45 ..       7      54 .. 0.66
   2 ?    9.1   1.7   0.00018       1.1      13      84 ..     143     220 ..     132     241 .. 0.68
   3 ?   -1.6   0.5      0.35   2.1e+03      62      62 ..     247     247 ..     217     284 .. 0.47

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.028
        IncD 36 rlvavavati..laval..lvvagllfsgv 61
                r v++++a i  lav+l  l v+gl++s v
  KIR65306.1 16 RNVTMTIAMIitLAVSLtmLGVSGLVYSKV 45
                555555555511455432277899999876 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00018
        IncD  13 rvvdriallercldpsnslptakrlvavavatilava.llvvagllfsgvlcs..pvsv...laaslffgvgafllgg 84 
                   vd i    r ld    l ta + +a+a a  +a+a ll+va  +          v+v   + as +f    f+l  
  KIR65306.1 143 EGVDEIVDQSRLLDKIFDLFTAGQNIALAGAIAMAIAaLLLVANTIQVAAYSKrrEVAVmklVGASNWFIQAPFVLEA 220
                 5689999999999**9************99999988537778876655444321123331114566666666666653 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.35
        IncD  62 l 62 
                 l
  KIR65306.1 247 L 247
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1046  (0.0583412); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2154.69
//
Query:       KIR65307.1  [L=159]
Description: single-stranded DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-61  205.5   0.1    3.5e-61  205.3   0.1    1.0  1  SmpB      SmpB protein


Domain annotation for each model (and alignments):
>> SmpB  SmpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.3   0.1   1.9e-65   3.5e-61       1     142 [.      10     150 ..      10     152 .. 0.98

  Alignments for each domain:
  == domain 1  score: 205.3 bits;  conditional E-value: 1.9e-65
                 EEE-CHHHTTSEEEEEEEEEB---HHHHHHHHH--EESSSEEEEEESSCEEEEESEE---S--SS----TT--EEBB--HHHHHHHHHHHHHHT-EEEE CS
        SmpB   1 iakNkkarhdYeieetyeaGivLkGtEvkslragkvnlkdsyvkikngelfllnvhiseyekgnifnhdpkrkrkLLlhkkeikklagkveekgltlvp 99 
                 +a+NkkarhdY i++tyeaG++L+GtEvkslrag+++l d++++ +ngelfl+++hi ey++g+++nh+p+r+rkLLl++ ei++l+gk++e glt+vp
  KIR65307.1  10 VASNKKARHDYAILDTYEAGMSLTGTEVKSLRAGRASLVDAFAQERNGELFLHGMHIPEYTQGTWTNHEPRRTRKLLLKRLEIDRLIGKTREGGLTMVP 108
                 589************************************************************************************************ PP

                 EEEEE.ESSEEEEEEEEEEC--SS--XXXXXXXXXXXXXXXXX CS
        SmpB 100 lklyfkkkglvKveialakgkklydkretlkerdakreieral 142
                 l++yf ++g++Kveialakgkk+ydkr++l++rda+rei+ra 
  KIR65307.1 109 LQVYF-SDGWAKVEIALAKGKKSYDKRQDLAKRDAEREIARAA 150
                 *****.88*******************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1069.25
//
Query:       KIR65308.1  [L=337]
Description: hypothetical protein TK50_07565 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2559.82
//
Query:       KIR65309.1  [L=531]
Description: benzoylformate decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-43  146.6   0.2    5.3e-43  146.6   0.2    2.6  3  TPP_enzyme_N    Thiamine pyrophosphate enzyme, N-terminal TPP
    9.2e-26   90.5   0.0    2.5e-25   89.0   0.0    1.8  1  TPP_enzyme_C    Thiamine pyrophosphate enzyme, C-terminal TPP
      3e-20   72.4   0.0      5e-20   71.6   0.0    1.4  1  TPP_enzyme_M    Thiamine pyrophosphate enzyme, central domain
     0.0019   17.4   0.0     0.0045   16.2   0.0    1.5  2  DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
  ------ inclusion threshold ------
      0.026   13.5   0.0      0.059   12.3   0.0    1.5  1  E1_dh           Dehydrogenase E1 component


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.6   0.2   1.5e-46   5.3e-43       2     171 ..       3     170 ..       2     171 .. 0.95
   2 ?   -3.5   0.0       1.8   6.6e+03      84     102 ..     192     210 ..     190     213 .. 0.78
   3 ?    2.8   0.4     0.022        77      50     145 ..     405     512 ..     404     525 .. 0.68

  Alignments for each domain:
  == domain 1  score: 146.6 bits;  conditional E-value: 1.5e-46
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   tv e   ++L+alg ++vfg+pGs++ p+l  + +   +r+v a+hE +a+++Adgya+atg+p+ v++++ pG+ n++++l++A+++++Pl+v +g
    KIR65309.1   3 TVRETTYELLRALGMTTVFGNPGSTEEPFLQDFPAD--FRYVHALHEASAVAMADGYAQATGRPAHVNLHTAPGTGNGMGNLVTAWHNKTPLIVSAG 97 
                   7888899****************************9..*********************************************************** PP

                   E--CCCHHS..TC--T...-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEEHH CS
  TPP_enzyme_N  99 drptslrgqgvlqqel...dqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevded 171
                   ++++++     l++ l    +++l +p++k+++++++++++p a+ rA++ta +++ gPv+l+lp+d +  ++d +
    KIR65309.1  98 QQSREMLL---LEPRLaspRAAELTQPYVKWSHEPARAQDIPAAFMRAYATAVQPPAGPVFLSLPLDDWARPADGP 170
                   ********...555555559*************************************************9999865 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.8
                   HHHHHHT--EEEEEEE--C CS
  TPP_enzyme_N  84 aeAkvdriPllvlsgdrpt 102
                   a+ + +r+P lvl g +++
    KIR65309.1 192 AQVAASRSPALVLGGAVDR 210
                   5567789999999998876 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.022
                   HHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEEE--CCCHH...........S..TC--T...-CCHHHCCCSSEEEE-SS CS
  TPP_enzyme_N  50 gaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsgdrptslrg...........qgvlqqel...dqlalfrpvtkyaervts 132
                   +a+++A +     + + vv+v     +   + al +A++ r+Pl v++  ++ + +             ++l   l   d +a++r +  +a+ v++
    KIR65309.1 405 AAVGIALAERDTGRGRPVVAVIGDGSFHYSVQALWTAARLRLPLAVVVPVNQQYAILkafaelkhtpgVPGLD--LpglDVVAVARGYGCAATVVEE 499
                   58888888888886677777766668888999***********977776666555555777776553322222..1445777777777777777777 PP

                   GGGHHHHHHHHHH CS
  TPP_enzyme_N 133 peelpealrrAir 145
                    + l  al  A++
    KIR65309.1 500 LDGLGDALGAALA 512
                   7777777776665 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.0     7e-29   2.5e-25      11     151 ..     381     519 ..     374     521 .. 0.88

  Alignments for each domain:
  == domain 1  score: 89.0 bits;  conditional E-value: 7e-29
                   HHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTT....SEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTTTS CS
  TPP_enzyme_C  11 rllkvkrprsyltsgglgtmGyglpaAiGaklakpd....revvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfggkrksgp 103
                   r l+++rp+sy+t    g +G+glpaA+G++la++d    r+vva++GDG+f +++q+l+ta+r +lp+ vvv  N+ y+  +   e ++     g+
    KIR65309.1 381 RRLRITRPGSYFT-MASGGLGFGLPAAVGIALAERDtgrgRPVVAVIGDGSFHYSVQALWTAARLRLPLAVVVPVNQQYAILKAFAELKHT---PGV 473
                   5579999*****9.689***************844233449********************************************888874...344 PP

                   BB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEE CS
  TPP_enzyme_C 104 agkdlkpvdfaklaealGakgarvekadveeleealkealekkgpali 151
                    g dl+ +d++++a+++G+ + +ve+   + l +al +al+ ++p+++
    KIR65309.1 474 PGLDLPGLDVVAVARGYGCAATVVEEL--DGLGDALGAALAADRPTVL 519
                   5556****************9998888..*****************98 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   1.4e-23     5e-20       2     137 .]     188     322 ..     187     322 .. 0.92

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 1.4e-23
                   HHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EE.EEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   2 ekaaellkaakrpvilvGggvarsgaseelrelaeklgiPv.vttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   ++ a+ ++a++ p++++Gg v+r+ga  ++++lae+l +Pv +     +  +pedhp+y g+l ++   +  eal+ +D+vl++Ga    +r + + 
    KIR65309.1 188 REFAAQVAASRSPALVLGGAVDRAGAWPAAVALAERLAAPVwAAPAPERTPFPEDHPHYRGVLPYA-IGPLAEALAGHDTVLVVGAPV--FRYYPHV 281
                   6789999**********************************5555566****************98.999***************996..5677799 PP

                   T.TTTTT-.EEEEEESSCCCCTTCC--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  98 p.efapea.kiihididpaeigknyqvdlaivgdvketleaL 137
                   p ++ p + +++h++ dp e  ++  v  ++++d++ +l aL
    KIR65309.1 282 PgDYLPAGtRLLHVTDDPDETARAP-VGDGLLADPGLALAAL 322
                   99*********************85.99**********9987 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.1     4e+03     104     127 ..      38      61 ..      30      66 .. 0.79
   2 !   16.2   0.0   1.3e-06    0.0045     116     173 ..     402     457 ..     389     469 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.1
  DXP_synthase_N 104 eyDafeagHsstsisaalGlavar 127
                     ++  ++a H ++++++a G a+a+
      KIR65309.1  38 DFRYVHALHEASAVAMADGYAQAT 61 
                     566678889999*******99985 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.3e-06
  DXP_synthase_N 116 sisaalGlavardlkgekkkvvaviGDgaltgGmafealnnigelkkkllvilNdNem 173
                      + aa+G+a a++ +g+ + vvaviGDg++    + +al ++++l+  l v++  N++
      KIR65309.1 402 GLPAAVGIALAERDTGRGRPVVAVIGDGSFH--YSVQALWTAARLRLPLAVVVPVNQQ 457
                     5789*************************97..5778999999999999888877765 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.7e-05     0.059      86     200 ..     382     486 ..     366     502 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.7e-05
                 .-E..BTT..BEEE-SSTTTHHHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--E.EEEEEEESEETTEEHHHH-S---GGG..T CS
       E1_dh  86 elmyaekesrilggngivgaqvplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpv.ifvveNNkygisTeaekasaskeladrar 183
                 +l + + +s ++ ++g +g   p + Giala +  g  + ++++iGDg+   +    al  aa  +lp  + v +N +y+i            +a+   
  KIR65309.1 382 RLRITRPGSYFTMASGGLGFGLPAAVGIALAERDTGRGRPVVAVIGDGSFHYS--VQALWTAARLRLPLaVVVPVNQQYAILK---------AFAELKH 469
                 5677788999***********99999**********************96544..5788889999999978888999999843.........3333333 PP

                 TTTS-EEEEETTSHHHH CS
       E1_dh 184 gvgipglrVdgnDplav 200
                   g+pgl   g D++av
  KIR65309.1 470 TPGVPGLDLPGLDVVAV 486
                 44555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3984.54
//
Query:       KIR65310.1  [L=267]
Description: purine nucleoside phosphorylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-38  132.9   0.3    1.3e-38  132.6   0.3    1.0  1  PNP_UDP_1  Phosphorylase superfamily
  ------ inclusion threshold ------
      0.028   14.6   0.1       0.22   11.7   0.0    2.2  2  TetR_C_6   BetI-type transcriptional repressor, C-terminal


Domain annotation for each model (and alignments):
>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.3   1.4e-42   1.3e-38       1     233 [.       6     242 ..       6     243 .. 0.88

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 1.4e-42
                 CEEEEESSH..HHHHHHHHHEEEEEEEEEE.TTEEEEEEEE.TTEEEEEEE--...SSHHHHH.HHHHHHHHHHC--SEEEEEEEEEESSTTT-TT-EE CS
   PNP_UDP_1   1 kiaiivgsp..gevellaespleetpfgregrgfkfvtGtl.kgkpvvivstG...iGkpnaa.vvaeirllkefgvkaiiriGtaGglnpdlkvGDvv 92 
                 +ia+i+gs+    +e   e+   +tp+g++  +  +++ ++  +++ ++ ++G     +p    ++a++++l ++gv+++++  ++Ggl+p+l +G++v
  KIR65310.1   6 DIAVIGGSGlyALLEGATEH-RVQTPYGEP--SDPVTIAEVgDRRVAFLPRHGrdhRHPPHLIpYRANLWALRALGVRQVLAPCAVGGLRPELGPGTFV 101
                 69*******65555666666.*********..9999999994455559*******966666666*********************************** PP

                 EEEEEEESSSCCGCCTHHCCTCCCCTTSSEE--HHHHHHHHHCHHTTTTTEEE.EEEEEESESS-CHHHHHHHHHHTC-CEEESSHHHHHHHHHHTT-- CS
   PNP_UDP_1  93 ipddainfdgrsplygpkeegqyfpdsydapadpelrallkeaaealgikvhr.GvvatadgfyaeteaelrllrrlgadaveMEtaavaqlArelgip 190
                 +pd++i+ + ++   +++++ + ++++ d+ ++p  r++l  aa+ +g++ +  G+ ++++g++++t+ae+r++   g ++v+M+++++a+lArel ++
  KIR65310.1 102 VPDQLIDRTSGRVQSYYDRG-AVHVAFGDP-YCPVGRRTLLDAAAGRGVPAVDgGTMVVVEGPRFSTRAESRWFTAIGGAVVNMTGHPEAVLARELALC 198
                 *******5555555555555.*********.*****************777766********************************************* PP

                 EEEEEEEEETTTB.ETTCTCH.HCCCHHHHHHHHHHHHHHHHHH CS
   PNP_UDP_1 191 faairvvsdlaag.gadaeatheeveefaqeaaknaaalllall 233
                 +  i++v+dl ag  a+++ t+eev  +++e+ +++  +ll ++
  KIR65310.1 199 YTPIALVTDLDAGvEAGESVTQEEVFRVFAENTDRLRGVLLDAV 242
                 *********99888888888999999999999999999988776 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.15   1.3e+03      78      95 ..      14      33 ..      11      49 .. 0.72
   2 ?   11.7   0.0   2.5e-05      0.22      31      64 ..     215     248 ..     214     256 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.15
                HHHHHHHHHHHHHHHTC..T CS
    TetR_C_6 78 rlaAlidGLwlraalap..e 95
                +l+Al++G + + +  p  e
  KIR65310.1 14 GLYALLEGATEHRVQTPygE 33
                799*****998888877544 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.5e-05
                 HHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
    TetR_C_6  31 aeaardpelaelqrenyarlrsnlrallaelaeg 64 
                 +e+++++e+ ++++en++rlr  l +++a+l +g
  KIR65310.1 215 GESVTQEEVFRVFAENTDRLRGVLLDAVAALPAG 248
                 6899*************************99883 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1968.07
//
Query:       KIR65311.1  [L=455]
Description: hypothetical protein TK50_07590 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-97  325.4   0.0    5.1e-97  325.1   0.0    1.0  1  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.1   0.0  2.8e-101   5.1e-97      11     406 .]      37     446 ..      28     446 .. 0.91

  Alignments for each domain:
  == domain 1  score: 325.1 bits;  conditional E-value: 2.8e-101
                  EEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHHH CS
  Aminotran_3  11 lvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKlar 108
                  l +  +eGv  +d dg+rylD+ s++  +n+GhahP+vv+a++ qaa l  +  + ++n++  ++a+ ++++ap++l++vf+ n G+e++e A+++ar
   KIR65311.1  37 LPVAGGEGVHFWDYDGNRYLDFSSQFVNLNIGHAHPRVVEAIQRQAARLCTIA-PHFANDQRSEAARLIAEHAPGDLNRVFFTNGGTESNEHAVRMAR 133
                  677889*******************************************8777.******************************************** PP

                  HHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB..-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHH.CHTCCCEEEEEE-SCET CS
  Aminotran_3 109 kyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpf..lpevvrlkypdeevlkeneeeeaalleeleale.kkkkdevaAvivEpiqg 203
                          t ++k+++   ++HG t++a+ +tg+     t+ g    +  +   +y   +++++ e+e+a++le le+++  +   ++aAv++E+i g
   KIR65311.1 134 L------VTGRPKVLSAYRSYHGATHTAMHLTGDPRRWPTDTGTAgvVRFFGPYPYRSAFHAETAEQECARALEHLEQVIqFEGPTTIAAVLIETIVG 225
                  *......9**************************77777776666323333444555555666666778888888888885556789*********** PP

                  TTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTS..B--TTTT-HHHH CS
  Aminotran_3 204 egGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgs..hgsTfgGnplac 298
                    G+ v+++++l ++r++c+++++lli DEv+tGfGrTG++f+++++gv pDl+t+aK++ +G  pl  v+  + v+  +a+     g T++G plac
   KIR65311.1 226 TNGILVPPDGYLPGVRAICDRYGILLITDEVMTGFGRTGAWFGVDNWGVVPDLITFAKGVNSGyVPLGGVIISDRVAAEFADRPypGGLTYSGHPLAC 323
                  ***************************************************************99***************887777999********* PP

                  HHHHHHHHHHHHTTHHHHHHHHHHHHHH.HHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC...............HHHHHHHHHCTEE-EEETTT CS
  Aminotran_3 299 avalavleiieeekllenaqelgaalke.gLeelqkkyevikevRgkGlmiaielkeeaevke...............keilkkakekGvlilsaGdn 380
                  a+a+a+++++e+e  +e+a+ lg+ +   +L+++++++  ++evRg+G++ a+el+ +++++e               +e++++ +  G++   ++ n
   KIR65311.1 324 AAAVATIRAMEDEGIVEHAAWLGEHVLGpRLRKMAESHPSVGEVRGLGAFWAVELVRDRRTREmlvpfaptpaqaapmNELAAACRRRGLWPF-THFN 420
                  **********************9987766*******************************8889**************99***********44.444* PP

                  EEEE---TT--HHHHHHHHHHHHHHH CS
  Aminotran_3 381 virllppliitdeeidelleilkkal 406
                   + ++pp +i++++++ +l+il +al
   KIR65311.1 421 RVHVVPPCVISEQDAQRGLDILDEAL 446
                  **********************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 2721.05
//
Query:       KIR65312.1  [L=458]
Description: methylaspartate mutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.9e-117  391.9   0.0   3.9e-117  391.4   0.0    1.0  1  Met_asp_mut_E  Methylaspartate mutase E chain (MutE)


Domain annotation for each model (and alignments):
>> Met_asp_mut_E  Methylaspartate mutase E chain (MutE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  391.4   0.0  2.2e-121  3.9e-117       9     414 ..      37     431 ..      33     444 .. 0.95

  Alignments for each domain:
  == domain 1  score: 391.4 bits;  conditional E-value: 2.2e-121
  Met_asp_mut_E   9 kklekakeegktllqpragvalldehiellktleeegeadllpttiDsytRqnryeeaeegieesleagkslLNGfPavnhGvkacRkvveavdvp 104
                    ++l+ a++ g+ ++qpr gv+  d +iell+ l  +g   +l++tiDs+tR  ++++a++ ++    ++ ++LNG+P+v+hG +  R++v  vdvp
     KIR65312.1  37 AALRAARRAGRPIVQPRCGVGSHDAMIELLRSLAPAG-PGMLTVTIDSFTRLRQFDHAARVLR----ENPADLNGYPLVTHGWQRGRELVATVDVP 127
                    579999*****************************99.8899****************77765....56789************************ PP

  Met_asp_mut_E 105 vqvrhgtpdarllaeitlagGftsfegggisynipyakkvsleetiekwqyvdrLvglyeEnGvsinrepfgpltgtlvPpsisiavaiiEallaa 200
                    +++rhg+pd+r l+++ la+Gftsfegggi ynipy+k+v+l +++e w+ vd ++g ++E+Gv ++re fg lt+ lvPpsis av+++Ea  a+
     KIR65312.1 128 LEIRHGSPDPRDLFAVSLAAGFTSFEGGGIGYNIPYCKDVPLATSLECWRQVDAVCGRLAEAGVLVDRELFGTLTAVLVPPSISLAVTLLEARAAV 223
                    ************************************************************************************************ PP

  Met_asp_mut_E 201 eqGvksitvgygqvgnlvqDvaalraleelaeeylkkfgyedvvvttvlhqwmGgfPqdeakafgvislgaavaalakatkvivKtphEalgvptk 296
                     qGv+++++ y q g++ qDvaalr+++ela  yl      dv+v  vlh++mG+fP+d   a +++ +g  va l++a+kvi Kt +Ea g+p +
     KIR65312.1 224 AQGVRCLSIAYPQGGEVHQDVAALRSIRELAARYLP----ADVEVYPVLHEFMGVFPRDRRAADALVLYGGLVARLGGADKVINKTNQEAYGIPDA 315
                    ************************************....8******************************************************* PP

  Met_asp_mut_E 297 eanaaglratkqvlnlledqkleeteeleeekelikketraildkvlelgdGDvavgavrafeaGvlDvPFapskanagkvlparDneGavrllef 392
                     ana g++++    + l d    + ++++ee++ +++e+ +++d vl+ gd D+a ++v af+aG lDvPF+ s +++ +v+p rD++Ga+r+  +
     KIR65312.1 316 AANATGIHTALLGGSALLDFVRLDEDRVREEMHWLQREVAELVDPVLD-GD-DLAGAIVAAFDAGRLDVPFSASVHARSEVVPGRDHTGAIRYRGA 409
                    ********99887777777666699*********************98.67.9******************************************* PP

  Met_asp_mut_E 393 gnlplseeikefhrekleeRak 414
                    gnlp+s e+++ + + l++ a 
     KIR65312.1 410 GNLPFSAEVRRHNADLLRHGAG 431
                    **********998887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3140.35
//
Query:       KIR65313.1  [L=61]
Description: hypothetical protein TK50_07615 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 430.37
//
Query:       KIR65314.1  [L=987]
Description: hypothetical protein TK50_07620 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-38  132.2  15.5    1.9e-38  132.2  15.5    4.2  3  BTAD         Bacterial transcriptional activator domain
    3.4e-27   94.5  37.0    4.5e-11   42.9   1.9    5.7  7  TPR_12       Tetratricopeptide repeat
      1e-09   38.0   0.0      3e-09   36.4   0.0    1.7  1  NB-ARC       NB-ARC domain
      1e-08   35.1   0.0    3.7e-08   33.3   0.0    2.0  1  Trans_reg_C  Transcriptional regulatory protein, C terminal
    4.5e-08   32.6   7.7       0.13   12.4   0.1    6.7  5  TPR_7        Tetratricopeptide repeat
    1.8e-07   30.8  24.4       0.16   12.2   0.0    7.6  7  TPR_2        Tetratricopeptide repeat
    6.6e-06   25.7   8.4        1.4    8.8   0.0    6.0  6  TPR_1        Tetratricopeptide repeat
    1.5e-05   24.8   0.0        1.7    9.0   0.0    5.0  4  TPR_8        Tetratricopeptide repeat
    0.00029   21.1   0.0    0.00091   19.5   0.0    1.8  1  AAA_22       AAA domain
    0.00041   20.8   0.2    0.00041   20.8   0.2    3.7  4  AAA_16       AAA ATPase domain
    0.00056   19.4   7.7    0.00056   19.4   7.7    2.9  3  TPR_MalT     MalT-like TPR region
     0.0012   19.3   0.8     0.0012   19.3   0.8    5.8  6  TPR_19       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.071   12.7   0.0    2.3  2  AAA_25       AAA domain
      0.014   15.2  38.8      0.041   13.7   0.4    7.9  8  TPR_10       Tetratricopeptide repeat
      0.015   15.6   2.3        2.5    8.7   0.0    4.0  3  TPR_17       Tetratricopeptide repeat
      0.069   12.6   0.1        0.9    8.9   0.0    2.7  4  SNAP         Soluble NSF attachment protein, SNAP
       0.09   12.8   0.0       0.26   11.3   0.0    1.8  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
       0.29   11.9  20.5         16    6.4   0.3    8.0  7  TPR_6        Tetratricopeptide repeat
       0.93   10.5  55.0      0.082   13.8   0.7   10.4  9  TPR_14       Tetratricopeptide repeat
        6.9    6.5   9.2        1.9    8.4   0.2    3.4  4  Wzy_C_2      Virulence factor membrane-bound polymerase, C-te


Domain annotation for each model (and alignments):
>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.2  15.5   2.1e-41   1.9e-38       1     146 []      98     242 ..      98     242 .. 0.99
   2 ?    1.4   0.6      0.45     4e+02      13      46 ..     825     858 ..     815     902 .. 0.73
   3 ?    0.2   1.8         1   9.3e+02       7      37 ..     937     967 ..     907     983 .. 0.75

  Alignments for each domain:
  == domain 1  score: 132.2 bits;  conditional E-value: 2.1e-41
                 BHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHH CS
        BTAD   1 vDlarfealvaagraalaagdpeeaaelleaAlalwrGpaladleagewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlh 99 
                 +D+ rfe lva++r++  +g+++ea+++l+aA alw G  la+++  e +ea r+ l+e+r +a+e+++++el+lGr++e+++eleal+a hPlrErlh
  KIR65314.1  98 LDAGRFELLVAESRHLGGEGQVAEAVARLRAADALWYGATLAGVPG-EPVEAWRRGLDERRGAAVEERIRLELTLGRHDELVGELEALIARHPLRERLH 195
                 79*****************************************988.99************************************************** PP

                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHH CS
        BTAD 100 rqlmrAlarsGrqaeALevYerlrrlLaeeLgvepgpelralheeil 146
                 ++lm+Al+r +rqa+AL++Y+r+r+l  eeLg+ep++el +l+++il
  KIR65314.1 196 AHLMLALYRADRQADALKAYRRARALFVEELGMEPSAELGRLERAIL 242
                 *********************************************98 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.45
                 HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT CS
        BTAD  13 graalaagdpeeaaelleaAlalwrGpaladlea 46 
                 +  +l++gdp++a +ll +Al + r+     +ea
  KIR65314.1 825 AGIRLEQGDPAAAQALLGEALTICRDAGARRVEA 858
                 5567899*************99988877776666 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHTT-- CS
        BTAD   7 ealvaagraalaagdpeeaaelleaAlalwr 37 
                 ea++ +   +l ++d +eaa++l++A++++ 
  KIR65314.1 937 EAQALYELSQLPDRDRAEAADQLRRAADIFG 967
                 4445555566777788888888888887764 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.5     0.061        54      49      74 ..     196     221 ..     168     224 .. 0.80
   2 !   28.2   1.0   1.9e-09   1.7e-06       4      73 ..     739     806 ..     736     810 .. 0.93
   3 !   23.1   2.3   7.6e-08   6.8e-05       2      76 ..     777     849 ..     776     850 .. 0.96
   4 !   35.4   0.9   1.1e-11   9.4e-09       3      76 ..     818     889 ..     816     890 .. 0.93
   5 !   42.9   1.9     5e-14   4.5e-11       3      75 ..     858     928 ..     856     930 .. 0.96
   6 !   22.0   2.1   1.7e-07   0.00015       3      74 ..     898     965 ..     896     968 .. 0.90
   7 ?    1.8   0.6      0.33     3e+02      20      54 ..     953     985 ..     947     985 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.061
      TPR_12  49 rnLgrlyralgryeeAlelleealai 74 
                   L  ++++++r+++Al+++++a a+
  KIR65314.1 196 AHLMLALYRADRQADALKAYRRARAL 221
                 45556778999************987 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 1.9e-09
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 ++l+ l+a+++ l +  +A++++ +al+i r l  ++++++a + rnL+ l r++g+ ++Al+ +e ala
  KIR65314.1 739 ITLHSLGAMHMFLRDPGQAERMFTAALRILRPL--GERHGVALVERNLAYLNRLRGDDRAALRGYEAALA 806
                 68999***************************9..5566***************************9998 PP

  == domain 3  score: 23.1 bits;  conditional E-value: 7.6e-08
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 va + +nla + r +g+   Al+ +e+al+   ++  +d  + a +l  ++ + +++g++++A++ll eal i++
  KIR65314.1 777 VALVERNLAYLNRLRGDDRAALRGYEAALAGLGSV--GDLVGRAHVLVSIAGIRLEQGDPAAAQALLGEALTICR 849
                 567788*****************************..9***********************************98 PP

  == domain 4  score: 35.4 bits;  conditional E-value: 1.1e-11
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 a +l+ +a + +++g+ + A++ll +al i+r +  + +  +a++l+ Lg+ly+++g+++ A+e ++ +l+i +
  KIR65314.1 818 AHVLVSIAGIRLEQGDPAAAQALLGEALTICRDA--GARRVEAQVLHRLGELYLRSGELRRAEESFQGTLDIVR 889
                 778999*************************999..55669***************************999977 PP

  == domain 5  score: 42.9 bits;  conditional E-value: 5e-14
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 a++l++l+++++r g++  A+e ++  l+i+r++   d+ ++a +l++Lg +y + gr+++A+++l++a +ia
  KIR65314.1 858 AQVLHRLGELYLRSGELRRAEESFQGTLDIVRAA--SDRTGEAYALHGLGVVYGRDGRLAKARAMLTRARQIA 928
                 78999*****************************..9********************************9996 PP

  == domain 6  score: 22.0 bits;  conditional E-value: 1.7e-07
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 a al+ l++v+ r gr+++A+++l +a++ia ++   ++  +a++l+ L++l   + + +eA + l++a +i
  KIR65314.1 898 AYALHGLGVVYGRDGRLAKARAMLTRARQIAGQV--VERVVEAQALYELSQLP-DR-DRAEAADQLRRAADI 965
                 568999*************************999..8899************6.55.789999999999887 PP

  == domain 7  score: 1.8 bits;  conditional E-value: 0.33
      TPR_12  20 deAlellekaleiarrllGpdhpltattlrnLgrl 54 
                 +eA + l++a +i+ +l    + + a++lr+L+++
  KIR65314.1 953 AEAADQLRRAADIFGEL--QARVWHARALRALADV 985
                 78999999999999999..56889******99986 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   3.3e-12     3e-09      23     212 ..     318     497 ..     292     521 .. 0.76

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 3.3e-12
                 EEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEEEEESXXHH....HHHHHXXHHHHHCCCTTSSSS-STTSHHHHHHHHCCCTTEEEEEEEE-SHHH CS
      NB-ARC  23 valvGmgGvGKttlakqilnksdevegrFdsvawvvvsktdks....eeiletilkeLslseddleekeeveslkrklvrlLltkrfllvlDDVweeed 117
                   + G gG GKt la ++ ++   v++  d+  +  ++  + s     e+l++ l+ L+ +     + ++  ++    +  L ++r+l++lD   +e +
  KIR65314.1 318 AVITGPGGAGKTSLAVHVAHS--LVDRFPDGQLYANLGGPSPSperpAEVLDRFLRALGVA--GPAIPDNLTERIGLYRSRLAGRRVLILLDNAADETQ 412
                 4689************99998..56665569999988765544111157888888888777..444444444456667789****************65 PP

                 H.....HHHHCHTTSEEEEEESBCCCCCCS-S-EEEEEESS--HHHHHHHHHHCCTS-GGCHH..CHHHHHHHHHHCTT-HHHHHHHHHHHC-T.C CS
      NB-ARC 118 wdkigvvlparenrlrvllTTRdeevanavsatsekievelLekdeawellenkvfekkleekesleevakeivekckGlPlalkvlggllstk.k 212
                        lp +  ++ v++T+R +   +  ++ s+ + v  L+++++  ll+++v ++ + e    + +a e+++ c+ lPlal + g+ l+++ +
  KIR65314.1 413 V---APLLP-NTDGCAVIVTSRARL--GTLAG-SHEVDVDALTPEQSVALLHQIVGDRIAAE----PVQADELARLCGWLPLALRIAGARLASRpH 497
                 5...66667.99**********984..45555.6789*********************9995....589*******************99997643 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   4.1e-11   3.7e-08      11      75 ..      26      89 ..      22      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 4.1e-11
                 HHHHHHHHHTTTSEEEHHHHHHHHTTTTS.TSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEE CS
  Trans_reg_C 11 fklLelLlenpgrvvsreeLleevwgede.dvddrtvdvhisrLRkkLeddekkprlIetvrgvGY 75
                 + +L++L++n+gr v+ e+L++ vw+ ++  ++ + ++ ++s+LR+ L++ ++k+  +et r  GY
   KIR65314.1 26 RTVLAILAANRGRAVQVEDLIDTVWDGHPpSTARSQIQICVSQLRRLLGEVGRKD-ALET-RFGGY 89
                 689************************998888999**************98666.6666.44566 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0081       7.2       1      30 [.     740     769 ..     740     774 .. 0.87
   2 ?    0.2   0.2       1.1   9.9e+02       5      28 ..     784     807 ..     782     813 .. 0.76
   3 ?    4.6   0.0     0.044        40       2      31 ..     821     850 ..     820     854 .. 0.90
   4 !   12.4   0.1   0.00014      0.13       2      34 ..     861     893 ..     860     895 .. 0.86
   5 ?    5.9   0.0     0.017        15       1      24 [.     900     923 ..     900     934 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0081
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltk 30 
                 +L+ L+ ++  l+d  +A++ ++++L++ +
  KIR65314.1 740 TLHSLGAMHMFLRDPGQAERMFTAALRILR 769
                 79**********************887655 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.1
       TPR_7   5 LarlysrlGdyeeAielyeqsLal 28 
                 La l + +Gd + A++ ye++La 
  KIR65314.1 784 LAYLNRLRGDDRAALRGYEAALAG 807
                 55555558************8875 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.044
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 L+ +a ++ ++Gd + A  l+ ++L +++d
  KIR65314.1 821 LVSIAGIRLEQGDPAAAQALLGEALTICRD 850
                 78899******************9999887 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 0.00014
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 L++L++ly r G+ ++A+e ++  L + ++ +d
  KIR65314.1 861 LHRLGELYLRSGELRRAEESFQGTLDIVRAASD 893
                 99*******************997777776665 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.017
       TPR_7   1 aLlnLarlysrlGdyeeAielyeq 24 
                 aL+ L+++y r+G+ ++A   +++
  KIR65314.1 900 ALHGLGVVYGRDGRLAKARAMLTR 923
                 799***************999998 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   3.0      0.02        18      10      30 ..     201     221 ..     200     222 .. 0.92
   2 ?    5.0   0.0     0.036        32       4      30 ..     741     767 ..     738     769 .. 0.92
   3 ?    0.4   1.8         1   9.3e+02       5      29 ..     782     806 ..     778     806 .. 0.91
   4 ?    4.0   0.0     0.072        64       7      32 ..     824     849 ..     818     851 .. 0.82
   5 !   12.2   0.0   0.00018      0.16       1      25 [.     858     882 ..     858     887 .. 0.93
   6 !   11.8   0.2   0.00023      0.21       1      31 [.     898     928 ..     898     930 .. 0.93
   7 ?   -1.7   0.2       4.8   4.3e+03      16      30 ..     951     965 ..     950     968 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.02
       TPR_2  10 ayyklgdyeeAleafekAlel 30 
                 a+y++++ ++Al+a+++A +l
  KIR65314.1 201 ALYRADRQADALKAYRRARAL 221
                 89****************987 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.036
       TPR_2   4 lynlGlayyklgdyeeAleafekAlel 30 
                 l+ lG  ++ l d+ +A++ f +Al++
  KIR65314.1 741 LHSLGAMHMFLRDPGQAERMFTAALRI 767
                 789**********************97 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                  nl+++ + +gd   Al+ +e+Al+
  KIR65314.1 782 RNLAYLNRLRGDDRAALRGYEAALA 806
                 589********************95 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.072
       TPR_2   7 lGlayyklgdyeeAleafekAleldP 32 
                 ++ + +++gd++ A +++ +Al ++ 
  KIR65314.1 824 IAGIRLEQGDPAAAQALLGEALTICR 849
                 5667789***************9976 PP

  == domain 5  score: 12.2 bits;  conditional E-value: 0.00018
       TPR_2   1 aealynlGlayyklgdyeeAleafe 25 
                 a++l++lG++y+++g++ +A+e f+
  KIR65314.1 858 AQVLHRLGELYLRSGELRRAEESFQ 882
                 6799*******************98 PP

  == domain 6  score: 11.8 bits;  conditional E-value: 0.00023
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 a+al+ lG +y + g++++A++ + +A +++
  KIR65314.1 898 AYALHGLGVVYGRDGRLAKARAMLTRARQIA 928
                 789************************9876 PP

  == domain 7  score: -1.7 bits;  conditional E-value: 4.8
       TPR_2  16 dyeeAleafekAlel 30 
                 d +eA++ +++A  +
  KIR65314.1 951 DRAEAADQLRRAADI 965
                 6789*******9876 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.9      0.24   2.1e+02      10      28 ..     201     219 ..     200     222 .. 0.79
   2 ?    4.3   0.0     0.043        39       4      30 ..     741     767 ..     739     769 .. 0.92
   3 ?   -1.1   0.7       2.2     2e+03       6      28 ..     783     805 ..     778     806 .. 0.89
   4 ?   -0.1   0.0       1.1   9.4e+02      11      32 ..     828     849 ..     820     850 .. 0.84
   5 !    8.8   0.0    0.0016       1.4       1      25 [.     858     882 ..     858     882 .. 0.94
   6 !    8.5   0.1     0.002       1.8       1      30 [.     898     927 ..     898     930 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.24
                 HHHHTT-HHHHHHHHHHHH CS
       TPR_1  10 ayfklgkydeAleyyekAL 28 
                 a+++  +  +Al++y++A 
  KIR65314.1 201 ALYRADRQADALKAYRRAR 219
                 6677777889*******96 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.043
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALel 30 
                 l  lG++++ l ++ +A+  +  AL++
  KIR65314.1 741 LHSLGAMHMFLRDPGQAERMFTAALRI 767
                 6789*********************87 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.2
                 HHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekAL 28 
                 nl+++ +  g+   Al  ye AL
  KIR65314.1 783 NLAYLNRLRGDDRAALRGYEAAL 805
                 999999***********999998 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 1.1
                 HHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  11 yfklgkydeAleyyekALelnP 32 
                  +++g++  A +   +AL+++ 
  KIR65314.1 828 RLEQGDPAAAQALLGEALTICR 849
                 5789**************9976 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyye 25 
                 a++l +lG +y++ g++  A+e ++
  KIR65314.1 858 AQVLHRLGELYLRSGELRRAEESFQ 882
                 68999*****************997 PP

  == domain 6  score: 8.5 bits;  conditional E-value: 0.002
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALel 30 
                 a+al +lG++y + g++ +A +   +A ++
  KIR65314.1 898 AYALHGLGVVYGRDGRLAKARAMLTRARQI 927
                 789*********************999877 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.1   9.6e+02       4      30 ..     741     767 ..     740     767 .. 0.90
   2 ?    4.0   0.0     0.078        70       1      32 [.     818     849 ..     818     850 .. 0.89
   3 !    9.0   0.0    0.0019       1.7       1      25 [.     858     882 ..     858     886 .. 0.95
   4 ?    3.9   0.0     0.082        74       2      27 ..     899     924 ..     898     929 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.1
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekalel 30 
                 ++ lg  ++ l d  +A+  +  al++
  KIR65314.1 741 LHSLGAMHMFLRDPGQAERMFTAALRI 767
                 5779999*****************986 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.078
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldp 32 
                 a++++ ++ i l++gd  +A++ + +al++ +
  KIR65314.1 818 AHVLVSIAGIRLEQGDPAAAQALLGEALTICR 849
                 56788899999*****************9976 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0019
                 CCHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyye 25 
                 a+++++lg +yl  g++  A+e+++
  KIR65314.1 858 AQVLHRLGELYLRSGELRRAEESFQ 882
                 789*******************996 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.082
                 CHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyeka 27 
                  a++ lg +y   g++ +A + + +a
  KIR65314.1 899 YALHGLGVVYGRDGRLAKARAMLTRA 924
                 68999****************99887 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     1e-06   0.00091       7     100 ..     317     407 ..     312     417 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst....sskdllrellralglelkaerlsseellealeqalraravielliiDEa 100
                 + v+tG+ G+GKT l+  ++++l+ +      ++++++ +l +++     ++++l ++lralg+ + a ++++ e + + +  l  r+v  l+++D+a
  KIR65314.1 317 LAVITGPGGAGKTSLAVHVAHSLVDR-----FPDGQLYANLGGPSpspeRPAEVLDRFLRALGVAGPAIPDNLTERIGLYRSRLAGRRV--LILLDNA 407
                 689********************755.....69999999998888878899*****************899999999999999999988..*****99 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       7.3   6.6e+03     121     128 ..     192     199 ..     143     258 .. 0.56
   2 !   20.8   0.2   4.5e-07   0.00041       2      52 ..     289     346 ..     288     517 .. 0.79
   3 ?   -1.3   0.0       2.8   2.5e+03      41      91 ..     570     620 ..     568     665 .. 0.69
   4 ?   -1.0   0.4       2.2     2e+03      53     112 ..     904     960 ..     874     983 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 7.3
      AAA_16 121 ellkrlla 128
                 e l ++l+
  KIR65314.1 192 ERLHAHLM 199
                 22222222 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 4.5e-07
      AAA_16   2 lvGReeeleqLlsalervrsgrp....elvllsGesGvGKsslvrellralekd...g 52 
                 + GR++ + +++++l + ++++     +l +++G+ G GK+sl+ +++++l ++   g
  KIR65314.1 289 FTGRQKLVGEIRDLLTAEADPGHrgfaPLAVITGPGGAGKTSLAVHVAHSLVDRfpdG 346
                 789999998888888833333334567**********************999984441 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2.8
      AAA_16  41 vrellralekdggiflrgkcdqlesaipy.sa.laqalareellrqlldeaes 91 
                 ++ ll++l   ++ +l+++ +  + +++y ++ l++++are+ll+++ + +++
  KIR65314.1 570 LEDLLEQLV--DVRLLEAHGHPQSGSTRYrLHdLVRVFARERLLAEEPAGERE 620
                 555555555..345566666666455666644499999998888887766443 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.2
      AAA_16  53 giflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpela 112
                   +++g+  +l +a+++++ a+++a  ++++ + ++++  el++ +++ ++++a  ++l+
  KIR65314.1 904 LGVVYGRDGRLAKARAMLTRARQIAG-QVVERVVEAQALYELSQLPDRDRAEAA--DQLR 960
                 45566666666555555555555534.555555555444444444443333333..2222 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   1.3       5.3   4.7e+03     210     260 ..     166     212 ..     158     220 .. 0.42
   2 !   11.1   1.5   0.00021      0.19      40     160 ..     738     855 ..     714     862 .. 0.75
   3 !   19.4   7.7   6.2e-07   0.00056       8     168 ..     825     983 ..     818     986 .. 0.50

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.3
    TPR_MalT 210 rlwlaqgdlaaaerwleaaelpsdddnhflelelrnlarvllalgrydeAl 260
                 rl l+ g+ ++++  lea     +    ++e+ + +l+ +l+ ++r+++Al
  KIR65314.1 166 RLELTLGRHDELVGELEALIARHP----LRERLHAHLMLALYRADRQADAL 212
                 333344444444333333332222....33333334444444444444444 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00021
    TPR_MalT  40 iaatavlGeasllqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndL 138
                 ++++ +lG  ++   d  +A++++ +a +++r  +  h ++l  + +a + + +G+ ++Al+ ye al+     g        ++lv+ a + +E++d 
  KIR65314.1 738 GITLHSLGAMHMFLRDPGQAERMFTAALRILRPLGERHGVALVERNLAYLNRLRGDDRAALRGYEAALAGLGSVGDL--VGRAHVLVSIAGIRLEQGDP 834
                 66777889888888899999999999999999999999988888899999999999999999999998844444333..34446667788999999999 PP

    TPR_MalT 139 eeAeqhlqeGielleqlepeaa 160
                  +A+  l e+++++++ +  ++
  KIR65314.1 835 AAAQALLGEALTICRDAGA-RR 855
                 9999999999999998743.33 PP

  == domain 3  score: 19.4 bits;  conditional E-value: 6.2e-07
    TPR_MalT   8 AllaiasgdaeralelArqALallpeddllar..iaatavlGeasllqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheAletye 104
                 A + + +gd+ +a++l  +AL++ ++     r  ++++  lGe +l  G+l +A++++q + ++ r+a   +  ++al +++ ++  +GrL +A  + +
  KIR65314.1 825 AGIRLEQGDPAAAQALLGEALTICRDAG-ARRveAQVLHRLGELYLRSGELRRAEESFQGTLDIVRAASDRTGEAYALHGLGVVYGRDGRLAKARAMLT 922
                 4445556666666666666666655443.2221244445566666666666666666666666666666666666666666666666666666666666 PP

    TPR_MalT 105 qalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGielleql.epeaaldayvlla 168
                 +a q a +  ++++++  ++  +l++l  ++ + e+A q l+++ ++  +l  + ++++a+ +la
  KIR65314.1 923 RARQIAGQVVERVVEAQALY--ELSQLP-DRDRAEAADQ-LRRAADIFGELqARVWHARALRALA 983
                 66666666666655555554..445542.3333333333.3333355555423344445555555 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       6.1   5.4e+03      26      57 ..      24      55 ..      23      61 .. 0.82
   2 ?    0.6   0.1      0.91   8.2e+02       4      17 ..     116     129 ..     115     137 .. 0.84
   3 ?   -1.8   0.4       5.2   4.7e+03      26      49 ..     193     216 ..     167     224 .. 0.59
   4 !   19.3   0.8   1.3e-06    0.0012       2      49 ..     829     882 ..     828     889 .. 0.81
   5 ?    5.8   0.1     0.022        19      16      57 ..     890     930 ..     880     942 .. 0.74
   6 ?    0.3   0.7       1.2   1.1e+03       7      38 ..     952     982 ..     947     986 .. 0.52

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 6.1
      TPR_19 26 earllLAeallalgqldeAealLdalpeedpd 57
                +ar  LA++  + g+  + e+l+d++++  p 
  KIR65314.1 24 RARTVLAILAANRGRAVQVEDLIDTVWDGHPP 55
                5788899999999*999999999999988877 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.91
      TPR_19   4 egdyaeAlalleqa 17 
                 eg+ aeA+a+l++a
  KIR65314.1 116 EGQVAEAVARLRAA 129
                 89999999999998 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 5.2
      TPR_19  26 earllLAeallalgqldeAealLd 49 
                 ++ + L+ al+ + + ++A ++  
  KIR65314.1 193 RLHAHLMLALYRADRQADALKAYR 216
                 555555555555555555544433 PP

  == domain 4  score: 19.3 bits;  conditional E-value: 1.3e-06
      TPR_19   2 laegdyaeAlalleqalqe..dpk....naearllLAeallalgqldeAealLd 49 
                 l++gd+a+A+all +al+   d++     a ++ +L e++l +g+l  Ae+  +
  KIR65314.1 829 LEQGDPAAAQALLGEALTIcrDAGarrvEAQVLHRLGELYLRSGELRRAEESFQ 882
                 89***************8844333675555555599**************9876 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.022
      TPR_19  16 qalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 +a ++  + a+a+ +L  ++   g+l++A+a+L ++ + + +
  KIR65314.1 890 AA-SDRTGEAYALHGLGVVYGRDGRLAKARAMLTRARQIAGQ 930
                 43.6666777888889999999***********999887776 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 1.2
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallal 38 
                  aeA++ l++a +     + ar + A+al al
  KIR65314.1 952 RAEAADQLRRAADIFG-ELQARVWHARALRAL 982
                 5666666666655544.344444445444443 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       7.8     7e+03      22      43 ..      16      37 ..      12      37 .. 0.82
   2 ?   12.7   0.0   7.9e-05     0.071      35      58 ..     317     340 ..     307     376 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 7.8
      AAA_25 22 rrwlvkgllpagelallaGapg 43
                rr  ++gl+++  la+la+ +g
  KIR65314.1 16 RRLDIPGLRARTVLAILAANRG 37
                5666999***********9876 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 7.9e-05
      AAA_25  35 lallaGapgtGKttlaldlalava 58 
                 la+++G++g+GKt la+++a++++
  KIR65314.1 317 LAVITGPGGAGKTSLAVHVAHSLV 340
                 899*****************9987 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       9.2   8.2e+03       3      17 ..      24      38 ..      23      39 .. 0.86
   2 ?    1.9   0.6      0.25   2.2e+02      11      37 ..     201     227 ..     200     231 .. 0.86
   3 ?   -3.2   0.0       9.9   8.9e+03      21      38 ..     446     462 ..     445     465 .. 0.82
   4 ?    7.5   0.0    0.0043       3.9       4      32 ..     740     768 ..     739     769 .. 0.94
   5 ?    1.3   2.5      0.37   3.3e+02       7      30 ..     783     806 ..     782     808 .. 0.95
   6 ?    7.4   0.1    0.0047       4.2      10      34 ..     826     850 ..     817     852 .. 0.83
   7 ?    7.0   0.2     0.006       5.3       2      34 ..     858     890 ..     858     894 .. 0.89
   8 ?   13.7   0.4   4.6e-05     0.041       2      36 ..     898     932 ..     898     935 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 9.2
      TPR_10  3 sslnNLanalrqrgr 17
                ++++ La++  +rgr
  KIR65314.1 24 RARTVLAILAANRGR 38
                678899******998 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.25
      TPR_10  11 alrqrgrydeAealleealairrrllG 37 
                 al++  r ++A++ +++a a+  + lG
  KIR65314.1 201 ALYRADRQADALKAYRRARALFVEELG 227
                 799999************998777776 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 9.9
      TPR_10  21 AealleealairrrllGp 38 
                 A+ + e+++a+  +++G+
  KIR65314.1 446 ALTP-EQSVALLHQIVGD 462
                 7777.9999999999986 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0043
      TPR_10   4 slnNLanalrqrgrydeAealleealair 32 
                 +l+ L++++  +++  +Ae+++  al+i 
  KIR65314.1 740 TLHSLGAMHMFLRDPGQAERMFTAALRIL 768
                 79************************986 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.37
      TPR_10   7 NLanalrqrgrydeAealleeala 30 
                 NLa + r rg+  +A++ +e ala
  KIR65314.1 783 NLAYLNRLRGDDRAALRGYEAALA 806
                 9*********************98 PP

  == domain 6  score: 7.4 bits;  conditional E-value: 0.0047
      TPR_10  10 nalrqrgrydeAealleealairrr 34 
                  +  ++g+ ++A all eal i+r 
  KIR65314.1 826 GIRLEQGDPAAAQALLGEALTICRD 850
                 55569******************96 PP

  == domain 7  score: 7.0 bits;  conditional E-value: 0.006
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrr 34 
                 A  l+ L+ ++ + g++ +Ae+ ++ +l+i r+
  KIR65314.1 858 AQVLHRLGELYLRSGELRRAEESFQGTLDIVRA 890
                 66799*****************99999998766 PP

  == domain 8  score: 13.7 bits;  conditional E-value: 4.6e-05
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrrll 36 
                 A +l+ L++++ + gr+++A+a+l +a +i  +++
  KIR65314.1 898 AYALHGLGVVYGRDGRLAKARAMLTRARQIAGQVV 932
                 789************************99987776 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.3       3.5   3.1e+03      18      33 ..     783     798 ..     782     799 .. 0.89
   2 ?    8.7   0.0    0.0028       2.5      13      34 .]     858     879 ..     857     879 .. 0.93
   3 ?    3.6   0.0      0.11     1e+02      13      33 ..     898     918 ..     892     919 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.5
      TPR_17  18 nLAelllknGdlmtAr 33 
                 nLA+l + +Gd + A+
  KIR65314.1 783 NLAYLNRLRGDDRAAL 798
                 9**********99885 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0028
      TPR_17  13 adaynnLAelllknGdlmtArq 34 
                 a +++ L+el+l+ G+l++A++
  KIR65314.1 858 AQVLHRLGELYLRSGELRRAEE 879
                 6799****************96 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.11
      TPR_17  13 adaynnLAelllknGdlmtAr 33 
                 a+a++ L++++ + G+l++Ar
  KIR65314.1 898 AYALHGLGVVYGRDGRLAKAR 918
                 789*****************9 PP

>> SNAP  Soluble NSF attachment protein, SNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.3     2e+03      86     107 ..     204     225 ..     200     243 .. 0.60
   2 ?   -2.2   0.0       2.5   2.2e+03      89     141 ..     753     804 ..     743     808 .. 0.87
   3 ?    8.9   0.0     0.001       0.9      85     144 ..     829     887 ..     817     917 .. 0.91
   4 ?   -1.0   0.1         1   9.3e+02      89     106 ..     951     968 ..     912     986 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.3
                 HHT-HHHHHHHHHHHHHHHHHT CS
        SNAP  86 kkvspeeAvealekAieiytek 107
                 + +++++A +a+++A ++++e+
  KIR65314.1 204 RADRQADALKAYRRARALFVEE 225
                 4445555555555555555554 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.5
                 -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHH CS
        SNAP  89 speeAvealekAieiytekgrfrraAklkkeiaelyekelgdlekAieaYekA 141
                 +p +A +++++A  i+   g  +  A  ++++a l     gd ++A++ Ye A
  KIR65314.1 753 DPGQAERMFTAALRILRPLGERHGVALVERNLAYLNRLR-GDDRAALRGYEAA 804
                 788999999999999999999999999999999999999.9999999999998 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.001
                 HHHT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH CS
        SNAP  85 ykkvspeeAvealekAieiytekgrfrraAklkkeiaelyekelgdlekAieaYekAael 144
                 +++ +p++A + l +A +i  ++g  r  A+    ++ely    g+l++A e+++   ++
  KIR65314.1 829 LEQGDPAAAQALLGEALTICRDAGARRVEAQVLHRLGELYLRS-GELRRAEESFQGTLDI 887
                 567799************************************9.**********987775 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1
                 -HHHHHHHHHHHHHHHHH CS
        SNAP  89 speeAvealekAieiyte 106
                 + +eA+++l++A++i+ e
  KIR65314.1 951 DRAEAADQLRRAADIFGE 968
                 444555555555555544 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00029      0.26       1      25 [.     317     341 ..     317     344 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00029
                 EEEEESSTTSSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   1 iaiastkGGvGKTtlaanLaralar 25 
                 +a++ + GG+GKT+la++ a +l +
  KIR65314.1 317 LAVITGPGGAGKTSLAVHVAHSLVD 341
                 589999***************9987 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   1.3      0.17   1.5e+02       6      28 ..     198     220 ..     195     222 .. 0.83
   2 ?    1.0   0.0      0.95   8.5e+02      14      32 ..     327     345 ..     322     346 .. 0.90
   3 ?   -0.7   0.4       3.3   2.9e+03       6      26 ..     784     804 ..     783     806 .. 0.81
   4 ?    0.3   0.0       1.6   1.4e+03       9      27 ..     827     845 ..     820     847 .. 0.80
   5 ?    5.8   0.0     0.027        24       1      24 [.     859     882 ..     859     886 .. 0.90
   6 ?    6.4   0.3     0.018        16       1      28 [.     899     926 ..     899     928 .. 0.91
   7 ?   -0.8   0.3       3.5   3.1e+03      13      23 ..     956     966 ..     938     984 .. 0.59

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerlik 28 
                 l l+++++++ ++Al+a++r + 
  KIR65314.1 198 LMLALYRADRQADALKAYRRARA 220
                 678889988999*******9875 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.95
                 HHHHHHHHHHHHHHHH-TT CS
       TPR_6  14 gdtdkAlealerlikeYPd 32 
                 g+t+ A+    +l++++Pd
  KIR65314.1 327 GKTSLAVHVAHSLVDRFPD 345
                 7899999999********8 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 3.3
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerl 26 
                 la++ r  gd ++Al+ +e  
  KIR65314.1 784 LAYLNRLRGDDRAALRGYEAA 804
                 788888878******999876 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAlealerli 27 
                  ++++gd+++A ++l + +
  KIR65314.1 827 IRLEQGDPAAAQALLGEAL 845
                 678899******9998765 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.027
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgdtdkAleale 24 
                 ++l +l+++y++ g+ ++A e ++
  KIR65314.1 859 QVLHRLGELYLRSGELRRAEESFQ 882
                 5799********77******9998 PP

  == domain 6  score: 6.4 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlik 28 
                 +Al  l+  y + g+ +kA+++l r ++
  KIR65314.1 899 YALHGLGVVYGRDGRLAKARAMLTRARQ 926
                 79**********77*********99875 PP

  == domain 7  score: -0.8 bits;  conditional E-value: 3.5
                 HHHHHHHHHHH CS
       TPR_6  13 lgdtdkAleal 23 
                 +++ ++A +++
  KIR65314.1 956 ADQLRRAADIF 966
                 23444444444 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1       1.9   1.7e+03      14      30 ..     116     132 ..     100     150 .. 0.84
   2 ?   13.8   0.7   9.1e-05     0.082       6      42 ..     163     199 ..     159     202 .. 0.84
   3 ?    5.2   4.1      0.05        45       3      33 ..     194     224 ..     193     237 .. 0.87
   4 ?    4.1   0.1      0.12     1e+02       7      30 ..     744     767 ..     740     782 .. 0.86
   5 ?   -0.9   0.6       4.9   4.4e+03       7      29 ..     784     806 ..     779     810 .. 0.84
   6 ?    5.0   0.5      0.06        54       7      39 ..     824     855 ..     818     861 .. 0.79
   7 ?    7.6   0.2    0.0089         8       3      25 ..     860     882 ..     856     893 .. 0.90
   8 ?    5.7   0.5     0.037        33       5      33 ..     902     930 ..     898     947 .. 0.78
   9 ?    0.5   4.5       1.7   1.5e+03      15      42 ..     950     978 ..     936     985 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.9
      TPR_14  14 lGdpdeAiallrralal 30 
                  G+ +eA+a lr+a al
  KIR65314.1 116 EGQVAEAVARLRAADAL 132
                 58999999999999664 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 9.1e-05
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawllla 42 
                 ++ +++l+lG++de +  l++++a++P  ++++ +l+
  KIR65314.1 163 ERIRLELTLGRHDELVGELEALIARHPLRERLHAHLM 199
                 678999*********************9988775553 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.05
      TPR_14   3 allalaeallalGdpdeAiallrralalaPd 33 
                 +++ l  al+++++ ++A++++rra al+ +
  KIR65314.1 194 LHAHLMLALYRADRQADALKAYRRARALFVE 224
                 56778899*****************998765 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.12
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l++ ++ l+dp +A++++ +al+ 
  KIR65314.1 744 LGAMHMFLRDPGQAERMFTAALRI 767
                 77888999*************984 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 4.9
      TPR_14   7 laeallalGdpdeAiallrrala 29 
                 la + + +Gd ++A++ +++ala
  KIR65314.1 784 LAYLNRLRGDDRAALRGYEAALA 806
                 5666677899999***9999997 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.06
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawl 39 
                 +a + l++Gdp++A all +al  + d a a++
  KIR65314.1 824 IAGIRLEQGDPAAAQALLGEALTICRD-AGARR 855
                 5677899***************99876.55555 PP

  == domain 7  score: 7.6 bits;  conditional E-value: 0.0089
      TPR_14   3 allalaeallalGdpdeAiallr 25 
                 +l +l+e++l++G++++A++ ++
  KIR65314.1 860 VLHRLGELYLRSGELRRAEESFQ 882
                 5789***************9987 PP

  == domain 8  score: 5.7 bits;  conditional E-value: 0.037
      TPR_14   5 lalaeallalGdpdeAiallrralalaPd 33 
                   l+ ++ + G++++A+a+l ra + a +
  KIR65314.1 902 HGLGVVYGRDGRLAKARAMLTRARQIAGQ 930
                 567889999**************988765 PP

  == domain 9  score: 0.5 bits;  conditional E-value: 1.7
      TPR_14  15 GdpdeAiallrralalaPd.daeawllla 42 
                 +d +eA++ lrra + + + +a++w + a
  KIR65314.1 950 RDRAEAADQLRRAADIFGElQARVWHARA 978
                 45677999999998876542556665443 PP

>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2    0.0021       1.9     135     177 ..     183     226 ..     169     232 .. 0.86
   2 ?   -2.0   0.1       3.3   2.9e+03     145     167 ..     780     802 ..     744     806 .. 0.74
   3 ?   -1.2   0.1       1.8   1.6e+03     108     172 ..     863     927 ..     846     942 .. 0.72
   4 ?    1.6   0.5      0.25   2.3e+02     150     180 ..     942     973 ..     928     980 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0021
     Wzy_C_2 135 klihlsP.epavierlilslallGdedeAeqilararalfpeed 177
                 +li++ P ++++ + l+l+l  ++++++A++ ++raralf ee 
  KIR65314.1 183 ALIARHPlRERLHAHLMLALYRADRQADALKAYRRARALFVEEL 226
                 56666664678888999***********************9875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.3
     Wzy_C_2 145 vierlilslallGdedeAeqila 167
                 v ++l+++  l Gd+ +A++ ++
  KIR65314.1 780 VERNLAYLNRLRGDDRAALRGYE 802
                 568999*********99998665 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.8
     Wzy_C_2 108 rayadllelgllplspenlaaklalarklihlsPepavierlilslallGdedeAeqilararal 172
                 r    +l+ g l    e  + +l+  r+++ +  e+  ++ l + +   G+ ++A+ +l rar +
  KIR65314.1 863 RLGELYLRSGELRRAEESFQGTLDIVRAASDRTGEAYALHGLGVVYGRDGRLAKARAMLTRARQI 927
                 55555666666666666777777777777777777777788888899999999999999999965 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.25
     Wzy_C_2 150 ilslallG.dedeAeqilararalfpeedakw 180
                 +++ +l + d +eA+++l+ra  +f+e +a+ 
  KIR65314.1 942 YELSQLPDrDRAEAADQLRRAADIFGELQARV 973
                 4444444415689************9987764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (987 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.52
# Mc/sec: 5711.30
//
Query:       KIR65315.1  [L=336]
Description: hypothetical protein TK50_07625 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-30  104.8  28.1    9.5e-16   58.2  10.5    2.0  2  EamA      EamA-like transporter family
  ------ inclusion threshold ------
        2.9    7.1   9.2          8    5.7   4.7    2.1  2  TPT       Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   9.6   4.7e-18   4.2e-14       2     136 ..      47     184 ..      46     185 .. 0.91
   2 !   58.2  10.5   1.1e-19   9.5e-16       2     133 ..     197     328 ..     196     331 .. 0.93

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.7e-18
        EamA   2 lgillallaalfwaiyfvls.killrkvspltltfvrfliagillliiallkegkl...aklslkdwllllllgllgtvlafllffyalkktsasnasl 96 
                 lg+l + +a+ +w+++++++ + + + + p +l++ r+li+ + l ++++l ++++   ++  + dw l++ +g l++++a+ ++f a++++++++a++
  KIR65315.1  47 LGLLAVCVATALWGFGGTVAsDLFDSGLRPAELVAARTLISLAGLGLLLALARRRPgtpRRTEPIDWPLVVAFG-LAIAVANACLFLAISHLPVAVAMV 144
                 689999**********999956667788***********99999988888888888666777777788888888.8*********************** PP

        EamA  97 itslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 +++l+P+f++ + v+l + +l++   lg+v++l+Gv+l++
  KIR65315.1 145 LQNLAPAFVVGWLVVLGRCRLGVAIALGLVVALAGVALVV 184
                 **************************************96 PP

  == domain 2  score: 58.2 bits;  conditional E-value: 1.1e-19
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsl 100
                 lg+ + ++ a+  a+  vl  ++ r++  l+++++ f +++++ l++ ++++ +  + ++  +  +l++++lgt++ f+lf ++  ++++   ++ + l
  KIR65315.1 197 LGVGFGIATAVGVAAFSVLGSRATRRYGALRANTYAFAVSSVAWLLYFAPQGVPEIVGRHDLLPGVLFVAILGTLAPFVLFSWGTARVGPHAGAVNICL 295
                 688899********************************************9999944444447788********************************* PP

        EamA 101 ePvftlilsvlllgekltlkqllgivlillGvl 133
                 ePvf+++l++ +lg++l+  q++g +l++ +v+
  KIR65315.1 296 EPVFSAVLAWTWLGQSLNAVQIAGGLLVIGAVV 328
                 ****************************99987 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   4.7   0.00089         8      65     135 ..     113     183 ..      84     250 .. 0.80
   2 ?    4.0   0.3    0.0029        26      68     132 ..     262     327 ..     230     330 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.00089
         TPT  65 lkailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGvala 135
                 +  ++  +l+ ++++    +++s+ +V  + ++  ++P+F v    +l + +l +++ l L++ ++Gval 
  KIR65315.1 113 WPLVVAFGLAIAVANACLFLAISHLPVAVAMVLQNLAPAFVVGWLVVLGRCRLGVAIALGLVVALAGVALV 183
                 45667778888889999999********************9988888888889999999999999999874 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0029
         TPT  68 ilplalvktlghvlavvslskvaVS.fthtvK.asePiFtvilsrlllgeklsllvylsLlpivgGv 132
                 +l++a++ tl+ ++  +s ++  V  ++  v   +eP+F+++l+   lg++l+   +   l ++g v
  KIR65315.1 262 VLFVAILGTLAPFV-LFSWGTARVGpHAGAVNiCLEPVFSAVLAWTWLGQSLNAVQIAGGLLVIGAV 327
                 55555555555543.455555555334555542569**************99988887777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2464.24
//
Query:       KIR65316.1  [L=218]
Description: hypothetical protein TK50_07630 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-18   65.6   9.9      4e-18   65.0   9.9    1.3  1  zf-CGNR   CGNR zinc finger
    5.5e-14   52.9  16.9    9.5e-14   52.2  16.9    1.3  1  ABATE     Putative stress-induced transcription regulator
  ------ inclusion threshold ------
        2.2    8.5   3.6       0.67   10.1   0.5    1.7  2  DUF826    Protein of unknown function (DUF826)


Domain annotation for each model (and alignments):
>> zf-CGNR  CGNR zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   9.9   6.6e-22     4e-18       1      44 []     165     208 ..     165     208 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 6.6e-22
                 GEEE--STT---EEE--SSS-----SSHH.HHHHHHHHTTTT-X CS
     zf-CGNR   1 RlkaCaapdCrwvfvDtSrngsrrWCsmraCGnrakvrrhraRr 44 
                 Rlk C a+dCrwvf+D+ rn++  WC+m++CGnr kvr+hr+R+
  KIR65316.1 165 RLKMCPAEDCRWVFYDHARNRTGVWCQMAECGNRRKVREHRTRQ 208
                 9*****************************************96 PP

>> ABATE  Putative stress-induced transcription regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2  16.9   1.6e-17   9.5e-14       6     124 ..      15     160 ..      10     161 .. 0.85

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 1.6e-17
                 HHHHH----HHHHHHHTTT-HHHHHH--TTHHHHHH........................HHHHHHHHHHHHHHT...HHHH................. CS
       ABATE   6 dlvNTrargggrraDlLttpadLaaWleaagllpagtaaagada..............elararaLRealralla...aaaag.........dpppaaa 78 
                  +vNT   + +r++D+L+t+++La Wl+aa  l+a +a+++++               + ++a++LRealr+++a   aaa+          ++p++aa
  KIR65316.1  15 SFVNT--LDLERGVDELDTVEGLAGWLAAASSLAALPAGSPRPGgstrpgvppalteaDRRAAVELREALRDTIAgtgAAAVVplgpsaprvAAPAPAA 111
                 7****..566799*********************************************99***************776333337999999999999*** PP

                 .HHHHHHHHHS----EEEE-TTS-E...............EEESTT--HHH CS
       ABATE  79 laalnallaaappaprLvrhddgpvdrardwhl.la....llatlAadaad 124
                 l++ln+++a+ p++ r ++++  ++++ +++++  a    ll+++A +a+d
  KIR65316.1 112 LERLNRVAARLPVHLRFADAA--TPQFVPERAGiDAvlagLLGVVAVAALD 160
                 *******77777666666555..7777777777777888888889988876 PP

>> DUF826  Protein of unknown function (DUF826)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.7     1e+04      47      58 ..      33      44 ..      21      47 .. 0.55
   2 ?   10.1   0.5   0.00011      0.67      41      60 ..     142     161 ..     140     164 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.7
      DUF826 47 aeLlGvaaasas 58
                + L G  aa++s
  KIR65316.1 33 EGLAGWLAAASS 44
                445565555554 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00011
      DUF826  41 eVDavLaeLlGvaaasasdd 60 
                  +DavLa LlGv a +a d+
  KIR65316.1 142 GIDAVLAGLLGVVAVAALDG 161
                 68************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1424.15
//
Query:       KIR65317.1  [L=260]
Description: transposase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-31  108.1   0.0    4.6e-31  107.6   0.0    1.2  1  DDE_Tnp_4  DDE superfamily endonuclease
      1e-12   47.6   0.0    3.3e-12   46.0   0.0    2.0  2  HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
    2.9e-11   43.4   1.2    2.9e-11   43.4   1.2    2.1  2  DDE_Tnp_1  Transposase DDE domain
  ------ inclusion threshold ------
      0.058   13.0   0.2      0.099   12.2   0.2    1.4  1  CobU       Cobinamide kinase / cobinamide phosphate guanyltra


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6   0.0     1e-34   4.6e-31       1     157 [.     102     251 ..     102     252 .. 0.96

  Alignments for each domain:
  == domain 1  score: 107.6 bits;  conditional E-value: 1e-34
   DDE_Tnp_4   1 iDgteipiqrpsnleeraqtysnykkkntlkvlivvdpngkiifvskgypGsvsDkeilensgllkalkeavkpgdvilaDkgFklse.kllvpykk.k 97 
                 +Dgt ipi+r  +   ++ +ys+++k+++++v+++ d+ g+ ++ s + pGsv+D ++++ +g+++al     ++ + +aDkg+++++ ++++p+k+ +
  KIR65317.1 102 LDGTLIPIDRVAD---QKPYYSGKHKRHGVNVQVIADAAGRLVWASPALPGSVHDLTAARTHGIIEALT---SANVMTFADKGYQGARgSVRTPFKRhR 194
                 6***********9...***************************************************99...57799********9886778***9999 PP

   DDE_Tnp_4  98 kkkqlseeevefnraiasarihvErvigrlkgrfrilrsrlriklvekidkivkvccvLh 157
                  + +ls ++++ nra+a++r   Er+i++lk ++++l  +lr + +++   iv++++vLh
  KIR65317.1 195 FRPKLSRRQKAVNRAHAKIRARGERAIATLK-TWKVLA-KLRCC-PRRSTPIVQAILVLH 251
                 99*****************************.*****5.99***.**************9 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   7.3e-16   3.3e-12       1      50 [.      34      83 ..      34      86 .. 0.95
   2 ?   -3.4   0.0       1.8   8.2e+03      12      18 ..     229     235 ..     229     237 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 7.3e-16
   HTH_Tnp_4  1 rkLsledqllltLvyLRlnltyqdLayrFgvsestvsrifhkwvdlLaer 50
                r+L+   q+ll+L +LR ++ty  La++F v +st++r++++ + lLa++
  KIR65317.1 34 RRLDAGRQALLALAHLRNGDTYTRLAAGFTVGVSTAWRYVQEAIALLATA 83
                589999*****************************************986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.8
   HTH_Tnp_4  12 tLvyLRl 18 
                 +L +LR+
  KIR65317.1 229 VLAKLRC 235
                 799***8 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       0.2   9.1e+02     184     209 ..      22      47 ..      11      61 .. 0.65
   2 !   43.4   1.2   6.6e-15   2.9e-11       8     190 ..     101     229 ..      99     248 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.2
   DDE_Tnp_1 184 lkrkfgldrlryrglnrveaqlllll 209
                 ++++ + +r r+r+l++ +++ll+l+
  KIR65317.1  22 IRSHRHQRRSRWRRLDAGRQALLALA 47 
                 44444555666666665555555554 PP

  == domain 2  score: 43.4 bits;  conditional E-value: 6.6e-15
   DDE_Tnp_1   8 ivDattvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvit.pgnvhdskglkq..lldelrprkgklvlaDaGYas..aelldtleekgvd 101
                 i+D+t++++ +   d+++ y+g+++++g++++++ d+  g ++++    pg+vhd +++++  ++++l    ++ ++aD+GY++   +++   +     
  KIR65317.1 101 ILDGTLIPIDRVA-DQKPYYSGKHKRHGVNVQVIADAA-GRLVWASPAlPGSVHDLTAARThgIIEALTS-ANVMTFADKGYQGarGSVRTPFK----- 191
                 89*******8888.99999*******************.5688998888************777777777.***********965455666666..... PP

   DDE_Tnp_1 102 yiirlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgl 190
                                          +h  +  l+++qk+ n+                         + +++R++ Er +++lk+ ++ 
  KIR65317.1 192 -------------------------RHRFRPKLSRRQKAVNR-------------------------AHAKIRARGERAIATLKT-WKV 229
                 .........................8999999**********.........................******************.553 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   2.2e-05     0.099      39      67 ..      18      46 ..      10      99 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.2e-05
        CobU 39 maeRiarHrerRpaeWetveepldlaeal 67
                +a+Ri+ Hr++R ++W+ +++ ++   al
  KIR65317.1 18 LADRIRSHRHQRRSRWRRLDAGRQALLAL 46
                789***************99876544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1872.06
//
Query:       KIR65318.1  [L=407]
Description: hypothetical protein TK50_07645 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-12   45.3   0.5    8.1e-12   45.3   0.5    4.8  5  HTH_31    Helix-turn-helix domain
    0.00019   21.4   0.0    0.00037   20.4   0.0    1.5  1  HTH_19    Helix-turn-helix domain
    0.00035   20.6   0.0    0.00094   19.2   0.0    1.8  1  HTH_3     Helix-turn-helix
  ------ inclusion threshold ------
       0.16   12.3   0.1         73    4.0   0.0    3.4  4  TPR_8     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.5   1.8e-15   8.1e-12       2      60 ..      14      72 ..      13      75 .. 0.96
   2 ?   -2.8   0.2       1.9   8.7e+03       5      22 ..     146     163 ..     143     186 .. 0.60
   3 ?   -4.8   5.0         4   1.8e+04       4      13 ..     209     218 ..     206     273 .. 0.66
   4 ?   -3.3   0.1       2.7   1.2e+04      46      60 ..     300     314 ..     295     318 .. 0.66
   5 ?   -1.0   5.4      0.53   2.4e+03      19      56 ..     355     404 ..     334     407 .] 0.57

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 1.8e-15
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpae 60
                +G+++++lR  +G+sq+  A+r+g s+s++ ++E+G r++ + +v+e +a  lg+ pa 
  KIR65318.1 14 IGRRVAELRVSRGMSQQVFADRIGRSKSWVDKVERGVRTLDRFSVIETVAATLGVAPAV 72
                79*****************************************************9985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.9
      HTH_31   5 lLralReraGLsqeevAe 22 
                 lL+++R++   s +++  
  KIR65318.1 146 LLADARAAGDASAADLPV 163
                 566666655555554433 PP

  == domain 3  score: -4.8 bits;  conditional E-value: 4
      HTH_31   4 alLralRera 13 
                 + LralR+  
  KIR65318.1 209 QALRALRQGK 218
                 6788888754 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 2.7
      HTH_31  46 vlealaralgldpae 60 
                  l+++++a +l ++ 
  KIR65318.1 300 ELTRALTAMRLGDHH 314
                 677888888876654 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.53
      HTH_31  19 evAerlgvsestlsrlEqGrrgrp.............spavlealaralgl 56 
                 ++A+r+ v+++ +   E+  r+               + a++++la  +gl
  KIR65318.1 355 HAAGRALVTADGIAPAETRLRP-AahaaltavlragpTAADVARLAATVGL 404
                 5666666666666666666664.4122222222222255566666655555 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   8.3e-08   0.00037       1      62 [.      15      76 ..      15      79 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 8.3e-08
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aelllkiaealgidleyllqg 62
                G+r+ e+R  +g++q+  a+r+g s+s   + E g + +++  +++  +a +lg+ +  ll g
  KIR65318.1 15 GRRVAELRVSRGMSQQVFADRIGRSKSWVDKVERGVR-TLDrFSVIETVAATLGVAPAVLLGG 76
                9**********************************99.9998999999999999988777765 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.1e-07   0.00094       2      53 ..      19      71 ..      18      73 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.1e-07
                HHHHHHTTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  2 kelRkqlglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvsld 53
                +elR  +g+sq+ +A+++G s+s + + E+G ++  + ++++ +a +Lgv ++
  KIR65318.1 19 AELRVSRGMSQQVFADRIGRSKSWVDKVERGvRTLDRFSVIETVAATLGVAPA 71
                79*****************************6665567778888888887665 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.33   1.5e+03       4      20 ..     166     182 ..     163     187 .. 0.80
   2 ?   -3.4   0.2       3.7   1.6e+04      15      32 ..     262     279 ..     253     281 .. 0.66
   3 ?    3.5   0.0     0.022     1e+02       7      27 ..     303     323 ..     301     325 .. 0.84
   4 ?    4.0   0.0     0.016        73      10      33 ..     347     370 ..     343     371 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.33
                 HHHHHHHHHHTT-HHHH CS
       TPR_8   4 yynlgsiylklgdyeeA 20 
                 y + ++++ klg+ + A
  KIR65318.1 166 YRLAAQVLVKLGKADLA 182
                 445679999***99876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.7
                 T-HHHHHHHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyekaleldp 32 
                 g   +A e+ e+a +l+ 
  KIR65318.1 262 GAVAAAAEFTERAAQLAA 279
                 555678888888887776 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.022
                 HHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyeka 27 
                  +++ + lgd++ A+++ ++a
  KIR65318.1 303 RALTAMRLGDHHLAVAAHRRA 323
                 58899**********987766 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.016
                 HHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  10 iylklgdyeeAkeyyekaleldpd 33 
                 ++l+lgd+++A  ++  a  ++p+
  KIR65318.1 347 AHLDLGDHHAAGRALVTADGIAPA 370
                 799********9999999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2999.13
//
Query:       KIR65319.1  [L=77]
Description: hypothetical protein TK50_07650 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.042   13.5   0.1      0.092   12.4   0.1    1.5  1  zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain


Domain annotation for each model (and alignments):
>> zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   5.1e-06     0.092       3      13 ..      57      67 ..      56      69 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.1e-06
  zf-NADH-PPase  3 hrFCgrCGapt 13
                   +r+C+rCG  t
     KIR65319.1 57 SRWCPRCGEST 67
                   79******887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 574.20
//
Query:       KIR65320.1  [L=282]
Description: hypothetical protein TK50_07655 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-14   53.8   0.3    1.8e-14   53.8   0.3    3.1  4  HTH_31         Helix-turn-helix domain
    1.2e-09   38.1   0.4    4.1e-09   36.4   0.1    2.2  3  HTH_3          Helix-turn-helix
    7.3e-06   25.9   0.1    1.8e-05   24.6   0.1    1.7  1  HTH_19         Helix-turn-helix domain
    0.00047   20.0   0.3     0.0027   17.6   0.0    2.4  3  HTH_37         Helix-turn-helix domain
    0.00098   18.9   0.0     0.0061   16.4   0.1    2.4  2  HTH_25         Helix-turn-helix domain
  ------ inclusion threshold ------
       0.14   12.6   0.1       0.45   11.0   0.0    1.9  2  HTH_26         Cro/C1-type HTH DNA-binding domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.3   6.1e-18   1.8e-14       1      60 [.      13      71 ..      13      75 .. 0.94
   2 ?   -2.9   0.1       3.1   9.3e+03      35      47 ..      79      90 ..      76      94 .. 0.51
   3 ?   -1.5   0.3       1.2   3.4e+03      11      11 ..     166     166 ..     143     203 .. 0.57
   4 ?   -0.1   0.0      0.41   1.2e+03      43      55 ..     246     258 ..     228     261 .. 0.81

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 6.1e-18
      HTH_31  1 aLGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpae 60
                +LG++Lr lR + GL+ e++A+++++s s++sr+E+G++  p+ +++  l+ a+g   +e
  KIR65320.1 13 RLGRELRKLRDAKGLTGEDAAKLVRCSSSRISRIESGEI-KPRAGDVMELLVAYGMRIDE 71
                79*************************************.6**************97554 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.1
      HTH_31 35 EqGrrgrpspavl 47
                Eq+r  ++ ++++
  KIR65320.1 79 EQARD-LREEGWW 90
                55555.4444444 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.2
      HTH_31  11 e 11 
                  
  KIR65320.1 166 L 166
                 0 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.41
      HTH_31  43 spavlealaralg 55 
                 s ++l++l +a++
  KIR65320.1 246 SARDLARLTDAYD 258
                 6789999999986 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1   1.4e-12   4.1e-09       1      54 [.      18      71 ..      18      71 .. 0.97
   2 ?   -3.4   0.0       3.7   1.1e+04      33      43 ..     140     150 ..     137     153 .. 0.49
   3 ?   -2.8   0.0       2.4   7.1e+03      39      54 ..     190     205 ..     189     206 .. 0.76

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.4e-12
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvslde 54
                l++lR+++gl+ e++A+++  s s isriE+Ge +P+   + +l+ a+g  +de
  KIR65320.1 18 LRKLRDAKGLTGEDAAKLVRCSSSRISRIESGEIKPRAGDVMELLVAYGMRIDE 71
                89***********************************************98886 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.7
                 SSCSBHHHHHH CS
       HTH_3  33 ernPsletlkk 43 
                 +  +s++++ +
  KIR65320.1 140 KDTISQRVAAR 150
                 45555555444 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.4
                 HHHHHHHHHHTSEHHH CS
       HTH_3  39 etlkklakaLgvslde 54 
                 + l+ l++  +v+++ 
  KIR65320.1 190 DQLVTLSRLPNVTIQV 205
                 5678899999999875 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   6.2e-09   1.8e-05       1      54 [.      15      67 ..      15      80 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 6.2e-09
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgi 54
                G+ L+++R  +glt e+ a+ ++ s s+is iE+g++ +p a+++  ++ a+g+
  KIR65320.1 15 GRELRKLRDAKGLTGEDAAKLVRCSSSRISRIESGEI-KPRAGDVMELLVAYGM 67
                788**********************************.9999988666666665 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   9.1e-07    0.0027      18      74 ..      13      68 ..      10      70 .. 0.83
   2 ?   -1.9   0.1       1.1   3.4e+03      19      41 ..     130     152 ..     123     154 .. 0.77
   3 ?   -2.2   0.0       1.4   4.2e+03      35      52 ..     171     188 ..     167     201 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 9.1e-07
                HHHHHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTTEE CS
      HTH_37 18 qlalaiaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalGqk 74
                +l +++++l+++++l+ ++aa+l   + +++sr++ g+++  +   +++ll+a G++
  KIR65320.1 13 RLGRELRKLRDAKGLTGEDAAKLVRCSSSRISRIESGEIKP-RAGDVMELLVAYGMR 68
                68899******************************998864.455566666666666 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHCT--HHHHHHHH CS
      HTH_37  19 lalaiaeliekrelsqseaaqll 41 
                  + +i +  +k  +sq+ aa+++
  KIR65320.1 130 EVNMIGRESDKDTISQRVAARMT 152
                 55568888899999999999875 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.4
                 HHHHHHHT--HHHHHHHH CS
      HTH_37  35 seaaqllgiaqPkvsrll 52 
                 seaa ++++  P+v r +
  KIR65320.1 171 SEAAVRTEVGGPEVLREQ 188
                 678888888888875544 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1     2e-06    0.0061       2      36 ..      18      52 ..      17      60 .. 0.93
   2 ?   -3.1   0.0       2.4   7.2e+03      31      41 ..      86      96 ..      86     101 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2e-06
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT--T CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEeddfd 36
                Lr+ R a+gl+ e++ak  + + + + ++E+++++
  KIR65320.1 18 LRKLRDAKGLTGEDAAKLVRCSSSRISRIESGEIK 52
                9******************************9876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.4
                HCT--TTSS-H CS
      HTH_25 31 Eeddfdalpep 41
                Ee+++++l ++
  KIR65320.1 86 EEGWWQRLGGR 96
                89999999876 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00015      0.45       2      56 ..      18      71 ..      17      71 .. 0.95
   2 ?   -4.0   0.0         6   1.8e+04      13      21 ..     247     255 ..     245     258 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
      HTH_26  2 LrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgD 56
                Lr+l  ++g+t  + a+ + +s++ +sr+ +g++  +++++ + +  a g+++++
  KIR65320.1 18 LRKLRDAKGLTGEDAAKLVRCSSSRISRIESGEI-KPRAGDVMELLVAYGMRIDE 71
                99*******************************9.99***********9999976 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6
      HTH_26  13 kseLargtg 21 
                 + +Lar t+
  KIR65320.1 247 ARDLARLTD 255
                 667888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2328.99
//
Query:       KIR65321.1  [L=62]
Description: hypothetical protein TK50_07660 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-19   68.9   0.4    3.4e-19   68.6   0.4    1.0  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.4   1.9e-23   3.4e-19       3      54 .]       6      56 ..       5      56 .. 0.89

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 1.9e-23
      DUF397  3 WrKSsySgggggnCVEvaalpda.vavRDSkdpdgpvLtftpaewaaFlagvk 54
                WrKS++Sg++g +CVEv+  + a + vRDSk p+ +vL f+p +wa+F +++k
  KIR65321.1  6 WRKSTRSGNNG-QCVEVRDRG-AqIDVRDSKFPAAAVLSFDPVAWATFTDSLK 56
                ********999.5****3333.4599***********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 478.21
//
Query:       KIR65322.1  [L=1142]
Description: helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-20   71.3   0.0    1.8e-19   70.1   0.0    1.7  1  Helicase_C     Helicase conserved C-terminal domain
    5.9e-13   48.7   0.0    1.4e-12   47.5   0.0    1.7  1  DUF3883        Domain of unknown function (DUF3883)
    3.6e-11   42.4   0.0      1e-10   40.9   0.0    1.6  1  SNF2_N         SNF2 family N-terminal domain
    1.3e-09   38.3   0.0    3.3e-09   37.0   0.0    1.7  1  ResIII         Type III restriction enzyme, res subunit
    5.1e-07   29.6   0.0    1.2e-06   28.4   0.0    1.6  1  DEAD           DEAD/DEAH box helicase
     0.0094   15.2   0.0      0.018   14.3   0.0    1.4  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
  ------ inclusion threshold ------
      0.047   12.9   0.0       0.11   11.8   0.0    1.5  1  DUF2075        Uncharacterized conserved protein (DUF2075)
        0.4   11.0   6.6      0.071   13.5   0.9    2.5  3  OmpH           Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   8.2e-23   1.8e-19      15     111 .]     496     596 ..     479     596 .. 0.87

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 8.2e-23
                 TTSEEEEEESSHHHHHH.HHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHH.TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSS CS
  Helicase_C  15 eggkilifvntidrlek.vklllekk..gikvavlhgelpqnereeileqfn.kgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgR 109
                   +k +if++ +d+l+  ++ +++ +    +v ++hg     +r+++ e+f  +  ++vL+atd+a++G++++ ++l++n+dlp+n+ ++ qr GR++R
  KIR65322.1 496 TPRKLIIFTEHRDTLDYlARKIRSLFgrPDTVQAIHGGVRRADRRAVTEEFTkNPGCQVLLATDAAGEGLNLQAAHLMVNYDLPWNPNRIEQRFGRIHR 594
                 57899**********7675555555555589999*****************8466788***************************************** PP

                 TT CS
  Helicase_C 110 ag 111
                 +g
  KIR65322.1 595 IG 596
                 97 PP

>> DUF3883  Domain of unknown function (DUF3883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   6.3e-16   1.4e-12       2      87 ..    1018    1102 ..    1017    1110 .. 0.86

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 6.3e-16
     DUF3883    2 Eklvlealkekekeegvewvnedve.dglgYDiesvdkedge.erfIEVKttakgkkdfelsrnElefaqekgdkYwlyrVfnagkep 87  
                  E+  +e + ++e++ g  +++ ++  ++ gYDi+s+  +dg+  + IEVK++++g++df++++nE+ + ++   +Y l++V++ +  p
  KIR65322.1 1018 ERRGVELVLAAERALG--REPREQAfNNPGYDILSIP-TDGSaSIRIEVKARIEGAEDFYVTHNEVVTGKNAVPHYRLALVTVSKAGP 1102
                  6777888999999998..8888888899********9.57775888***********************************9984443 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   4.6e-14     1e-10      59     247 ..     124     298 ..     123     376 .. 0.74

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 4.6e-14
                 EE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------EEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  59 iLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydvvittY 157
                 +LaD++G+GKT+++   i+++     +d ++          Liv+P  l+dqW++e+     + + ++l              +   +++++  +i   
  KIR65322.1 124 LLADDPGAGKTIMAGLYIKELLL--RDDVKR---------CLIVAPGGLVDQWQDELFFKF-GLRFDILSTAMV------DAALGSSVFEQHPLLIARM 204
                 7*************999995544..555555.........9***************75433.333444544443......2467889************ PP

                 HHHHHHT......TTS-S-S-SEEEES-GGGT--T.......TSHHHHHHHH--..-S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 158 dvlsreaelqkkrsvlkqvewkrvvlDEghtlkns.......tskaaeavskLs..tsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllqr 247
                 d l+r+       s+l + e + vv+DE+h+++ +       +++  +  ++L+  t++ +++t+TP   + ed+   l +L+ + f+    f+ ++++
  KIR65322.1 205 DQLARND---GLASHLDDAEFDLVVVDEAHRMGAHyfggkvnKTRRFQLGESLRdrTRHLLLMTATPHAGKEEDFQLFLTLLERDGFE--GRFNAGVHN 298
                 ****988...689**********************887765545555566678867899999**************999999988887..455555554 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   1.5e-12   3.3e-09      22     170 ..     118     269 ..     100     270 .. 0.72

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1.5e-12
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHG.GGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH. CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleef.kkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadse 119
                 +   r+l++   G+GKT++a   i++ll   + +++l+++p+  l++q+++e+  kf    ++  ++ + +    +  +  ++  +l++  ++l ++  
  KIR65322.1 118 RMPLRFLLADDPGAGKTIMAGLYIKELLLRDDVKRCLIVAPGG-LVDQWQDELfFKFGL-RFDILSTAMVDAALGS--SVFEQHPLLIARMDQLARND- 211
                 556688999999*****************************95.889999875233333.3333333333322222..4556899************9. PP

                 .......HHHTTT-SEEEEETGGGTTS.......TTTHHH..HHT---..SEEEEEESS-S CS
      ResIII 120 eeeeeseellrdrfdviiiDEaHrlgak......kswrei..lekfke..avllglTATpe 170
                        +l++ +fd++++DEaHr+ga       ++ r+    e++++    ll +TATp 
  KIR65322.1 212 ---GLASHLDDAEFDLVVVDEAHRMGAHyfggkvNKTRRFqlGESLRDrtRHLLLMTATPH 269
                 ...99**********************76655443444433344443234899999***95 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   5.3e-10   1.2e-06      18     170 ..     124     269 ..     114     276 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 5.3e-10
                 EEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEE.EEETTSSHHHHHHHHHTTCSEEEEEHHHHHHHH.HC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD  18 lvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvl.liiggvaardqlskldngvdivvgtpgrlddll.st 114
                 l+a + G+GKT ++ + + + +++   ++ +++liv+P   L+ q  ++l  f+k  +lr   l +  v+a    s++ ++  ++++  ++l++     
  KIR65322.1 124 LLADDPGAGKTIMAGLYIKELLLR---DDVKRCLIVAPG-GLVDQWQDEL--FFK-FGLRFDiLSTAMVDAALGSSVF-EQHPLLIARMDQLARNDgLA 214
                 566778*************99975...9999*******6.6999999998..666.3566663344566677777777.78889998888888733345 PP

                 TSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
        DEAD 115 gklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlp 170
                  +l+  ++ ++V+DEa+r+    f+ ++n+  +++ q  ++ +  +r++++++AT++
  KIR65322.1 215 SHLDDAEFDLVVVDEAHRMGAHYFGGKVNK-TRRF-QLGESLRdRTRHLLLMTATPH 269
                 5666677788********************.6666.556665657778********9 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     8e-06     0.018      55     154 ..     492     598 ..     477     631 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8e-06
  ERCC3_RAD25_C  55 yhekrgDkiivfsDnvfaLkeyakklkkpy........iyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrrqea 142
                           k+i+f+++  +L  +a+k++  +        i+G +++a+r ++ ++f knp +++++    + + ++l  a  ++  +      r e 
     KIR65322.1 492 PDADTPRKLIIFTEHRDTLDYLARKIRSLFgrpdtvqaIHGGVRRADRRAVTEEFTKNPGCQVLLATDAAGEGLNLQAAHLMVNYDLPWNPNRIE- 586
                    555566789999999999999999988765555555559******************************************************99. PP

  ERCC3_RAD25_C 143 qrlGriLrakkk 154
                    qr+Gri r  ++
     KIR65322.1 587 QRFGRIHRIGQT 598
                    9*****997665 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.7e-05      0.11       9     102 ..     128     235 ..     123     261 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.7e-05
     DUF2075   9 vaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakke............ekkkkkeafeklssfinnlsef...kkaeekkeepkedvv 92 
                 ++G+GKt+++   + el   +++ ++ +++  + lv+  + +l  k                  +++fe+   +i ++++    +  +++ ++ ++d+v
  KIR65322.1 128 DPGAGKTIMAGLYIKEL-LLRDDVKRCLIVAPGGLVDQWQDELFFKFglrfdilstamvDAALGSSVFEQHPLLIARMDQLarnDGLASHLDDAEFDLV 225
                 57888888877777777.3344444444444455555555555555455555533333333355666777777777777778877788889999***** PP

     DUF2075  93 ivDEAhrllt 102
                 +vDEAhr+  
  KIR65322.1 226 VVDEAHRMGA 235
                 *******976 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.2   4.9e+03      34      74 ..     333     380 ..     325     407 .. 0.46
   2 ?   -1.0   0.2      0.91     2e+03      58      90 ..     424     458 ..     370     471 .. 0.62
   3 ?   13.5   0.9   3.1e-05     0.071      22     117 ..     912    1035 ..     908    1050 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHHHHHHHTTTS....-HHHHHH....HHHHHHHHHH CS
        OmpH  34 eleakekelqklqeelqkkakkl.e..keekeqe....lqkkeqelqq 74 
                 el+a e+ l + ++e+ ++ ++  e    ++++     l  ++++l  
  KIR65322.1 333 ELTADEQGLYERVTEYVREGMNRaErlDDKRRNTvgfaLTVLQRRLAS 380
                 666666666777777766666644443222222244442223332222 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.91
                 -HHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHH CS
        OmpH  58 keekeqelqkkeqelqqkqqqka..qelqkkqqel 90 
                  e  ++e++++e+el +++ +++   el+ + +el
  KIR65322.1 424 DEHSAEEVEQLEEELLDSATAARtiAELNTELAEL 458
                 55556667777777777444444555555555554 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 3.1e-05
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS..-HHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHH.............. CS
        OmpH   22 eqlekkfkklqaeleakekelqklqeelqkkakkl.ekeekeqelqkkeqelqqkqqqka.qelqkkqqellkpildkinkai.............. 102 
                  +++e+++++ ++ l+ + + l+ ++ + q+k++++ + +e    l +k qelq  ++q++   l ++ q ++kp   +i +a               
  KIR65322.1  912 AEIERTRARVDQRLAHESNRLTGEAIAAQEKEQAGtKPKESSDSLIRKAQELQV-RRQARlALLDQQAQLVTKP--PRIMTAAlvlplsmvdaeipa 1005
                  689999999*************9999999888887445555555**********.6666626666666556666..555544445555555555555 PP

                  ........HHHHHHTT-SEEEE........ CS
        OmpH  103 ........kevakekgydlvld.......s 117 
                          ++  +++g+ lvl        +
  KIR65322.1 1006 eapihakeTKAVERRGVELVLAaeralgrE 1035
                  556666556666666666666666666553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 7956.92
//
Query:       KIR65323.1  [L=126]
Description: hypothetical protein TK50_07680 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   15.8   1.2      0.039   14.7   0.5    1.8  2  TetR_C_15  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_C_15  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.11     2e+03      42      69 ..      23      50 ..       9      66 .. 0.67
   2 ?   14.7   0.5   2.2e-06     0.039       5      60 ..      71     126 .]      69     126 .] 0.96

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.11
   TetR_C_15 42 aleqriaealaalLarrrpelppedlel 69
                +l +++a+ l+++ +  r e p++d+++
  KIR65323.1 23 ELTDELADDLREIGEVERVEQPVTDPHT 50
                5666666666666666666666666654 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 2.2e-06
   TetR_C_15   5 aldalvdallaahrenpalrrvlleeapslgelelvealeqriaealaalLarrrp 60 
                 +++alvd +la+ +++ + r+ l+    +l+  + ++++ ++++++++a ++r+rp
  KIR65323.1  71 YVQALVDVVLAFLQRHTGRRVHLRVGDIELTIDRPTHRQTDELVATVRAAIERARP 126
                 689*************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 943.49
//
Query:       KIR65324.1  [L=1205]
Description: peptidase C14 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-25   88.1   0.0    8.8e-25   87.5   0.0    1.3  1  AAA_12           AAA domain
    1.2e-24   87.5   0.3    8.3e-12   45.4   0.1    2.3  2  AAA_11           AAA domain
    4.1e-12   46.2   9.0    4.6e-07   29.7   0.8    4.3  4  AAA_30           AAA domain
    4.2e-09   36.7   0.0    7.1e-09   36.0   0.0    1.3  1  Peptidase_C14    Caspase domain
    1.3e-06   28.8   0.0    2.5e-05   24.7   0.0    2.8  2  AAA_19           AAA domain
    1.5e-06   27.9   1.4    4.3e-06   26.5   0.1    2.5  2  UvrD_C_2         UvrD-like helicase C-terminal domain
    2.7e-05   24.1   0.1        0.1   12.4   0.0    2.4  2  Helicase_RecD    Helicase
     0.0022   17.8   0.3        1.5    8.5   0.0    3.3  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0028   17.1   0.2      0.017   14.6   0.3    2.0  2  PhoH             PhoH-like protein
     0.0096   16.1   0.0      0.019   15.1   0.0    1.6  1  MTES_1575        REase_MTES_1575
  ------ inclusion threshold ------
      0.041   13.6   0.0       0.11   12.3   0.0    1.6  1  IstB_IS21        IstB-like ATP binding protein
      0.061   13.5   0.1       0.59   10.3   0.0    2.9  2  AAA_33           AAA domain
      0.071   12.5   0.0       0.11   11.9   0.0    1.2  1  UvrD_C           UvrD-like helicase C-terminal domain
       0.11   12.4   0.1       0.21   11.5   0.1    1.3  1  RsgA_GTPase      RsgA GTPase
        0.3   11.4   9.0        6.1    7.2   9.0    3.0  1  AAA_16           AAA ATPase domain


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.0   7.3e-28   8.8e-25      13     198 ..     901    1073 ..     889    1074 .. 0.87

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 7.3e-28
      AAA_12   13 ekekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeeplep.lvfidvekseeekekkeksyiNeeEaelvvklvekllkkgse 108 
                  + + ++lLd+ YR+hp+I++ p++++Y+g+L+  ++ ++           p ep + + dv +  +  ++   s +N+ Eae+vv  v  l +++++
  KIR65324.1  901 A-ATTQLLDEHYRCHPDIVDVPNREVYQGRLTVLTDPARLA--------APAEPaVRWRDVPGRFSPGTT--GSGFNPVEAEAVVAEVAGLRAAYPD 986 
                  3.7899*************************8766555444........45777799*****99999987..8************************ PP

      AAA_12  109 eerkkigvitpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsn..ekkeig.flkderrlNValTRAkskliivGnk 198 
                  +   +igv+tp +a  + l   l+++  ++   ++ ++t+ +fQG+e+d++++s V ++  ++++ g + ++ +  NVa+TRA+s+l++vG++
  KIR65324.1  987 A---SIGVVTPLAAHQRRLAAVLRAAGLTE---NLLCATIHKFQGSERDIMVVSPVGAHgvPDRTRGwLAHQTNLWNVAITRARSQLVVVGDR 1073
                  9...9*******************766664...69***********************988777788355566667***************96 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   3.4e-13   4.1e-10       2      76 ..     516     580 ..     515     644 .. 0.87
   2 !   45.4   0.1     7e-15   8.3e-12     207     258 ..     810     860 ..     806     862 .. 0.88

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 3.4e-13
      AAA_11   2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllr 76 
                 +n+ q+e i+ a+s++  t+ qGPPGtgK++ +++ll+ +          +a++ +L+ + SN AvD +l+r+  
  KIR65324.1 516 TNEAQEEIIRAAMSQPL-TVAQGPPGTGKSQLVTALLATA---------TAAGQSVLIGSTSNQAVDSVLDRVTG 580
                 699*************6.**********************.........79*********************876 PP

  == domain 2  score: 45.4 bits;  conditional E-value: 7e-15
      AAA_11 207 gsklleklakkfdvviIDEAaqavEpstliPlrlgakkvvLvGDpkQLpatv 258
                 ++++l++  + +d+v+IDEAaq++ p++l P++++ak+++L+GDp+QL ++v
  KIR65324.1 810 SARRLKRSPALYDLVVIDEAAQCTIPAIL-PMLYRAKRALLIGDPRQLAPVV 860
                 56778888889***************976.899999**************98 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.8   3.9e-10   4.6e-07       3      62 ..     517     574 ..     515     600 .. 0.90
   2 !   16.0   0.0   6.4e-06    0.0076      89     131 ..     819     859 ..     762     876 .. 0.82
   3 ?    0.2   0.1      0.43   5.2e+02      37      82 ..     979    1056 ..     976    1074 .. 0.60
   4 ?    1.9   0.1      0.13   1.6e+02      42     110 ..    1076    1161 ..    1067    1169 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.9e-10
      AAA_30   3 naeQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvL 62 
                 n+ Q+++++a+++++  ++v++Gp+GtGK+ +++al ++++aag++v++ + +++a + +
  KIR65324.1 517 NEAQEEIIRAAMSQP--LTVAQGPPGTGKSQLVTALLATATAAGQSVLIGSTSNQAVDSV 574
                 899******999999..9******************************999999998874 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 6.4e-06
      AAA_30  89 g..tllivDEagmvdtkqlaallkaaekagakvilvGDerQlasV 131
                 +  +l+++DEa+ + +  +  +l +a++     +l+GD+rQla+V
  KIR65324.1 819 AlyDLVVIDEAAQCTIPAILPMLYRAKR----ALLIGDPRQLAPV 859
                 3359*********************988....9***********9 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.43
      AAA_30   37 alreaweaaggrvi..glAptgkaAkvLaeelgi....eastiakllkrlk...........................g 82  
                  +lr+a+ +a   v+  ++A++ + A+vL++ +g+     ++ti+k+  + +                           +
  KIR65324.1  979 GLRAAYPDASIGVVtpLAAHQRRLAAVLRA-AGLtenlLCATIHKFQGSERdimvvspvgahgvpdrtrgwlahqtnlW 1056
                  567777776433433478888999999995.353333389999999877776666666665555555555444444442 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.13
      AAA_30   42 weaaggrviglAptgkaAkvLaeelgieastiakllkrlk................grarlepg.tllivDEagmvdtkqlaallk 110 
                  w  + g + +lA  g aA++  ++ +++a+++++ l++ +                   r +++  +++ D ag  d + l+++l+
  KIR65324.1 1076 WSGQRGLLTALALAGDAADTQPDAGNVPADRLHRALRNAGltvrrdvpvagqpvdlVVRREDAElAVVVDDPAGDPDGRVLRKVLA 1161
                  55555677899*********999999**********77779999999888888876323334442333334566666666666665 PP

>> Peptidase_C14  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0     6e-12   7.1e-09       2     203 ..       4     192 ..       3     235 .. 0.72

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 6e-12
                    EEEEEECSTTSSTCC...-STTHHHHHHHHHHHHHHHTT.EEEEEEEGGEES-CHHHHHHHHHHHHCHSGGTTESEEEEEEESEEE.T........ CS
  Peptidase_C14   2 kAliIginnYpgtka...eLrGcanDaermaklLvkrlg.FevenililtddptgknirkalkwlvksadhspgDslvvhysGHGt.rvpae.... 88 
                    +Al++g    + + +   +L     D+ ++++lL +  g F+         d+ ++++r+ ++++    +   gD ++++ysGHG+    ++    
     KIR65324.1   4 HALLLGTATCH-ADRelaPLPSVRQDVAQLKALL-DGAGeFDSVR---AALDLPAAHLRQVVEEFYGARR--TGDLALLYYSGHGVlH--GDgqsl 90 
                    67777777444.33346799**************.8888788888...78899*************5555..79************62..444588 PP

                    EEECTTC.SSEEEHHHHHHTTSTTTHGGGTTS.-EEEEEESESSSBCBEEEEEEES-SSSHCCCHCHHHHHHCSHHCEEECTTTSEEEEESSSTTB CS
  Peptidase_C14  89 civpvdv.nsliqdddirdlfggdklpslagk.pktiiidaCrgglldkgiekdtsptnkfeedssskekkpekqslsklpseadvlllsgcqddq 182
                    ++  +d  ++ ++ + + +  + ++l+++ +  +k++++d+C  g++      +     +            ++  ++  +  ++++l s++ ++ 
     KIR65324.1  91 FLAATDTvGGQLHATAFDTDGMLRHLLNDTKAsQKVVLLDCCFSGAFTARNRFRG----G-----------VREEPRRLKRQRGTFILTSSTHQKA 171
                    ******9944444444433333444444443249*********665533222222....2...........3444566666666788888888888 PP

                    SCEEETTTEEHHHHHHHHHHH CS
  Peptidase_C14 183 tSadgsengsaftqalqkvle 203
                      a+g+ + s+ft+ l++ l+
     KIR65324.1 172 SKAQGPDRPSVFTEVLLDGLR 192
                    889999999999999988774 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.1e-08   2.5e-05       1     144 [.     520     859 ..     520     861 .. 0.82
   2 ?   -3.2   0.0       8.2   9.8e+03     125     138 ..    1060    1073 ..    1051    1074 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.1e-08
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae..........................atTi 72 
                 q+e+++ a+++++ +  ++pGtGK++++++ +a + ++g    +++l+ +  ++A++ + +r+++l ++                              
  KIR65324.1 520 QEEIIRaAMSQPLTVAQGPPGTGKSQLVTALLATATAAG----QSVLIGSTSNQAVDSVLDRVTGLIGPglllrtgnkehrmqepkhladilaayP--- 611
                 8999996777777777899*******************9....78******************999999999888766666666666655555550... PP

      AAA_19  73 Hrlal.............................................................................................. 77 
                                                                                                                    
  KIR65324.1 612 ----Saeratapddrtplhelrllaeeatglraalderrllerdladlateraavpdpdavplpaddtalahlvhltdralasrwfgwwyrwrlrsyqv 706
                 ....055555555555555555699999999999999************************************************************** PP

      AAA_19  78 ...........................................................................................ldfddllt 85 
                                                                                                            l       
  KIR65324.1 707 vdrdavaalaeravlelrwrerlrrlgelpdaeaswrrlvdligterparsidllraqiarrvaagarvlqdrademarpqsdswsyfpelL------- 798
                 ****************************************************************9999999999888887777777766662....... PP

      AAA_19  86 ealelle.............eaeeekklqeeellivDEfqdvd.elqyrLlkallgekkklllvGDpdQliyv 144
                       +             + +++  l   +l+++DE+ + + +    +l  l+ ++k+ ll+GDp Ql +v
  KIR65324.1 799 ------RvlpgwavtalsarRLKRSPAL--YDLVVIDEAAQCTiPA---ILPMLY-RAKRALLIGDPRQLAPV 859
                 ......1333333333333233344444..56*******9887555...555666.445679*******9876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.2
      AAA_19  125 llgekkklllvGDp 138 
                  ++  + +l++vGD+
  KIR65324.1 1060 ITRARSQLVVVGDR 1073
                  4444588******6 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       4.4   5.2e+03      34      41 ..     883     890 ..     873     892 .. 0.84
   2 !   26.5   0.1   3.6e-09   4.3e-06       5      52 .]    1018    1070 ..    1015    1070 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.4
    UvrD_C_2  34 rrrlLYta 41 
                  rrl Yta
  KIR65324.1 883 ARRLTYTA 890
                 59*****9 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 3.6e-09
    UvrD_C_2    5 ltihkaQGsefpaVivfdpdlaaarmgel......rrrlLYtavTRAreklilv 52  
                   tihk+QGse ++ +v  p+ a    ++       + +l  +a+TRAr +l++v
  KIR65324.1 1018 ATIHKFQGSERDIMVV-SPVGAHGVPDRTrgwlahQTNLWNVAITRARSQLVVV 1070
                  6************999.777777776666999999*****************98 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   8.7e-05       0.1       3      46 ..     536     578 ..     534     621 .. 0.88
   2 !    9.1   0.0   0.00091       1.1      82     118 ..     812     848 ..     780     851 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.7e-05
  Helicase_RecD   3 tAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfefl 46 
                    ++ +G+GKS ++  +la ++a+g+ ++l+ ++s+++v+++++++
     KIR65324.1 536 QGPPGTGKSQLVTALLATATAAGQ-SVLIGSTSNQAVDSVLDRV 578
                    5789******************98.8*************99887 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00091
  Helicase_RecD  82 dellklkeqadllvvDEAAaiplpllkkllekfkrvv 118
                    ++l+++++  dl+v+DEAA++ +p +  +l + kr +
     KIR65324.1 812 RRLKRSPALYDLVVIDEAAQCTIPAILPMLYRAKRAL 848
                    5556666667**************9999887777765 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1      0.03        36       2      22 ..     534     554 ..     533     584 .. 0.77
   2 !    8.5   0.0    0.0013       1.5      61     101 ..     819     857 ..     803     920 .. 0.87
   3 ?    1.3   0.0       0.2   2.4e+02     214     233 ..    1051    1070 ..     983    1071 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.03
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts 22 
                      v +G pG GKS+l+  ll t 
       KIR65324.1 534 VAQGPPGTGKSQLVTALLATA 554
                      67899***********99984 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0013
  Viral_helicase1  61 tkgkililDEylllhaGyill.laalskaklvilfGDplQip 101
                        ++++++DE+ +++   i + l  l++ak ++l+GDp+Q  
       KIR65324.1 819 ALYDLVVIDEAAQCT---IPAiLPMLYRAKRALLIGDPRQLA 857
                      45899******9999...6665889***************65 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.2
  Viral_helicase1  214 esrenllvAlTRhrkslvil 233 
                       ++ +   vA+TR+r++lv++
       KIR65324.1 1051 HQTNLWNVAITRARSQLVVV 1070
                       5677778*********9976 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3   1.4e-05     0.017       3      45 ..     514     556 ..     512     563 .. 0.84
   2 ?   -0.9   0.0      0.77   9.2e+02     122     158 ..     823     856 ..     819     870 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
                 ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHH CS
        PhoH   3 kpktkeQkeylealkkndivfaiGpaGtGKtylavalavealk 45 
                 ++ +++Q+e+++a +++ +++a Gp GtGK+ l +al ++a+ 
  KIR65324.1 514 SATNEAQEEIIRAAMSQPLTVAQGPPGTGKSQLVTALLATATA 556
                 57899**************************998776555554 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.77
                 EEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE----- CS
        PhoH 122 fvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqi 158
                 +v++DEA  +t   +  +l R     ++ + Gd+ q 
  KIR65324.1 823 LVVIDEAAQCTIPAILPMLYRA---KRALLIGDPRQL 856
                 699****999999999999986...577888888875 PP

>> MTES_1575  REase_MTES_1575
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.6e-05     0.019       5      52 ..    1107    1153 ..    1104    1195 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.6e-05
   MTES_1575    5 VaeaLrergykvkpqvgvggfriDlvvedpgkyllaIecdgdkyhssk 52  
                  +++aLr+ g++v++ v v+g  +Dlvv+++ +  la+ +d ++   + 
  KIR65324.1 1107 LHRALRNAGLTVRRDVPVAGQPVDLVVRRE-DAELAVVVDDPAGDPDG 1153
                  6789**************************.99****99988766544 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     9e-05      0.11      51      80 ..     534     563 ..     521     573 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9e-05
   IstB_IS21  51 vllGpsGvGKshlaialgveavraglsvlf 80 
                 v  Gp+G+GKs l +al   a +ag svl 
  KIR65324.1 534 VAQGPPGTGKSQLVTALLATATAAGQSVLI 563
                 457************************985 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00049      0.59       2      24 ..     533     555 ..     532     640 .. 0.82
   2 ?   -3.0   0.0       6.3   7.5e+03      60     107 ..     869     916 ..     851     918 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00049
      AAA_33   2 vllvGlpGsGKstlaerllkklg 24 
                 ++  G+pG+GKs+l++ ll+  +
  KIR65324.1 533 TVAQGPPGTGKSQLVTALLATAT 555
                 5678*************986655 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.3
      AAA_33  60 nelarkalsagrnvildatnlsrrerarflklarrlgvpvrivvvetd 107
                 +e+ar  ls g+ +  + t++ +++ ++f ++a      ++   +++d
  KIR65324.1 869 AERARAGLSTGWLTARRLTYTAHSAYDAFAAAAATTQLLDEHYRCHPD 916
                 577888888888888899999999999999999888888888877776 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.9e-05      0.11     287     345 ..    1015    1070 ..    1001    1074 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.9e-05
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  287 ipiiTiHqAKGlEFdvVflagleegtfPsyrskkekrleEEkRlfYVaiTRAkkrLfis 345 
                      TiH+  G+E d+ ++  +    +P    ++ + l+   +l  VaiTRA+++L++ 
  KIR65324.1 1015 LLCATIHKFQGSERDIMVVSPVGAHGVP---DRTRGWLAHQTNLWNVAITRARSQLVVV 1070
                  5567************************...6678999******************985 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00017      0.21      79     126 ..     510     557 ..     505     570 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
                  EEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  79 vllvsaktkegleelkellkdktsvlvGqSGvGKStLinallpelelk 126
                  ++++sa+++++ e +++++++ ++v  G+ G GKS L+ all +++++
   KIR65324.1 510 TVAMSATNEAQEEIIRAAMSQPLTVAQGPPGTGKSQLVTALLATATAA 557
                  4677888889999999*************************9886655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   9.0    0.0051       6.1      21     147 ..     528     656 ..     518     803 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0051
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea... 116
                 +++ +l++  G++G+GKs lv++ll  ++++g  +l g +     +  ++ ++ ++    llr  + e++ +e+ + ++ l +  +a ++ a++++   
  KIR65324.1 528 MSQ-PLTVAQGPPGTGKSQLVTALLATATAAGQSVLIGSTSNQAVDSVLDRVTGLIGPGLLLRTGNKEHRMQEPKHLADILAAYPSAERATAPDDRtpl 625
                 444.577789***************99999964443333333322223344666665545555555554444444444433333334444444444555 PP

      AAA_16 117 srllellkrll.allsrderplvlvlDdlqwa 147
                 + l+ l  ++   +++ der  +l  D ++ a
  KIR65324.1 626 HELRLLAEEATgLRAALDER-RLLERDLADLA 656
                 44444444444333333333.55555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.47
# Mc/sec: 7773.79
//
Query:       KIR65325.1  [L=1364]
Description: hypothetical protein TK50_07690 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.16   10.9   0.0       0.29   10.0   0.0    1.4  1  Chlorophyllase2  Chlorophyllase enzyme
        1.3    9.2   3.8        2.9    8.1   1.6    2.6  3  DUF748           Domain of Unknown Function (DUF748)


Domain annotation for each model (and alignments):
>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   3.3e-05      0.29      88     133 ..     210     259 ..     128     272 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3.3e-05
  Chlorophyllase2  88 dlsklalsgHSrGgktafalalgkaktsl.....kfsaligvdPvagasks 133
                      dl++++l gHSrGg+++ + +  ++  ++      +  +i + Pv++  k+
       KIR65325.1 210 DLTRIGLMGHSRGGDAVSSFIDYNRI-RTdgpryPLRGVISLAPVDYERKA 259
                      799************98887654444.333566789999999999987654 PP

>> DUF748  Domain of Unknown Function (DUF748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.24   2.1e+03      82     103 ..     346     367 ..     337     395 .. 0.84
   2 ?   -2.9   0.0      0.78     7e+03     110     145 ..     707     739 ..     698     740 .. 0.69
   3 ?    8.1   1.6   0.00032       2.9      35     131 ..    1271    1360 ..    1268    1363 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.24
      DUF748  82 kgldLaplspYlakylgleles 103
                 ++l L+ +++Y  + l++++++
  KIR65325.1 346 NNLRLSGAASYTDPDLNYKIDN 367
                 6899999999999999999986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.78
      DUF748 110 lrykl.akgdklkltaegnlgleqLelgdrvdsedll 145
                 l++++ a gd      +g+++l+++++++++ ++ ll
  KIR65325.1 707 LELRFgA-GDM---PKSGSIQLADVRFQESAAGARLL 739
                 5555523.333...46899999999999988877665 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00032
      DUF748   35 ltlsnlsslpeqpadvelsgavnkggplqisGtlnplplaselelslkgldLaplspYlakylglelesGkLsldlrykl..akgdklkltaegnlg 129 
                  ++l ++++++ ++ + +++++vn +g+l+++G+  ++ +++ +++ +  l ++ + +Y ++ ++     G+L++ +++++  a  ++   +a+ +++
  KIR65325.1 1271 VQLGKVTTDA-KAGTATITATVNTAGTLTLTGDKVVAVTKQVGKAGTVTLTVTVAPAYRQQLVK----AGRLDVTVTVAFgnA--TG--QRASKTVQ 1358
                  6788887666.5599999****************99999999************9999999988....8**********9633..33..25666666 PP

      DUF748  130 le 131 
                  ++
  KIR65325.1 1359 VR 1360
                  65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 9127.33
//
Query:       KIR65326.1  [L=1189]
Description: hypothetical protein TK50_07715 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-87  293.1   0.2    4.1e-87  292.5   0.2    1.3  1  AMP-binding     AMP-binding enzyme
    3.6e-53  180.9   0.0    4.7e-53  180.5   0.0    1.1  1  Condensation    Condensation domain
    9.7e-26   89.9   0.4    1.6e-12   47.6   0.1    2.7  2  PP-binding      Phosphopantetheine attachment site
      3e-10   40.9   0.3    1.7e-09   38.5   0.3    2.5  1  AMP-binding_C   AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
      0.052   13.5   0.3        4.7    7.2   0.0    3.5  3  Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.5   0.2   1.1e-90   4.1e-87       3     423 .]     562     957 ..     560     957 .. 0.89

  Alignments for each domain:
  == domain 1  score: 292.5 bits;  conditional E-value: 1.1e-90
                  HHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEE CS
  AMP-binding   3 eqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvlia 100
                  ++a+ +p++va+    +g++l+Y+eld+++  lA +L ++Gv++gdrVa++++++++ v a+la+l+aGa++vp++ + ++++ + il+ds++++ + 
   KIR65326.1 562 QRARAYPEAVAVRH--GGKSLSYGELDAAAAGLAGHLVEAGVRPGDRVAVAAERGADAVTAFLAVLRAGAAYVPVDVAQPPARSRTILRDSGVRLAL- 656
                  7899********66..9*********************99*********************************************************. PP

                  TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSC CS
  AMP-binding 101 tvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfk 198
                   ++  +    +e     ++++ v  +d +++     l ++++ ++      ++++++  ++ay++YTSG+TG+PKGV++ h++++  v      +  +
   KIR65326.1 657 -CQPGA----QE-----HVPAGVPTVDLAAA-----LAGAADRPA-----SPPVPVTVRHPAYVMYTSGSTGTPKGVVVPHEAILRLVPRS---NFLS 731
                  .75443....22.....33344555664333.....444443332.....24568999*****************************9995...3466 PP

                  CTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EB CS
  AMP-binding 199 lkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggepls 296
                  l+++dvv +    a++++  le+++al++Gat+ ++p++ al+p+++ +++++ +v+v+++++++l+a++++  ++       + +lr++l+gg++  
   KIR65326.1 732 LHPEDVVAHLSNTAFDAAT-LEVWGALCAGATLAVVPREVALSPHRMGRFLADTGVSVMFTTNALLNAIVAH-VPD------AFAGLRVLLIGGDQYA 821
                  999***************6.***************************************************7.355......6889************ PP

                  HHHHHHHHHHHTC.EEEEEEEEGGGSSECEE....CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHE CS
  AMP-binding 297 pellrffralfge.evlegYGlTEttgvvtv....lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeaf 389
                   e +r++ a + + +++++YG+TE+t++ +     +  + d+ +l  +G ++ g+ ++++D+  + pv++g +Gel+v+g+g++ gY ++p +t  af
   KIR65326.1 822 LEPVRRMLAAGAPqHLVNAYGPTENTTFSAAhevtAA-DLDRGVL-PIGGAIDGTYLRVLDDR-LAPVAPGGTGELYVGGQGLADGYVGDPGRTGAAF 916
                  **********99999*************955575333.3443444.5***************9.********************************** PP

                  EE......T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 390 ds......e.grwlrTGDlgrldedGyleivgRkkdliklr 423
                  ++      +  r++rTGDl+rl +dG + ++gR +d++k++
   KIR65326.1 917 VAdpyavePgARLYRTGDLVRLLPDGGVVFLGRRDDQVKVS 957
                  *78999964456***************************85 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.5   0.0   1.3e-56   4.7e-53       3     450 ..      89     520 ..      87     523 .. 0.92

  Alignments for each domain:
  == domain 1  score: 180.5 bits;  conditional E-value: 1.3e-56
                   EEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHHH CS
  Condensation   3 deyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeeai 99 
                   +e p+sp  +r++f   l+++s  y +++  ++ g +d e+l+ alq l++rh+aLRt f+     + +  +++++ +++ v+++s  e  ++ + +
    KIR65326.1  89 RETPMSPTEERLLFSDRLHPGSPLYCVPVRYRFAGDVDAEALRAALQDLVDRHEALRTCFT----ADGRRLVRSAAALPWTVVDLSGEEPARAAAEA 181
                   6889********************************************************5....44678899*************77777777779 PP

                   HHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--.HHHHHHHHHHHHCSHHHHHHH CS
  Condensation 100 eefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktp.Ykdyaeweqqyleskdlekee 195
                    +++ +++++p   +  pL ra+l++   +r++lll++HH+i+D  Sl +l r+l++ Y     ge + l ++ p  +     ++  ++  d   ++
    KIR65326.1 182 RRYVAEEARRPVPTDVPPLARACLVTEPGDRAVLLLTLHHLIADQHSLDLLDRQLQQSY-----GERVGLARDLPpLR-----RRGLAGRPDAAAAR 268
                   99*********************************************************.....55555555544233.....68999********* PP

                   HHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHH......T-SEEEEEEEEESSTTCST CS
  Condensation 196 aYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskyt......gqddivvgteisgReseik 286
                   a+W+ ql+g    ++Lp+d++rp +    ++ ++  +d+++ ++l++la +  ++  +vllaa++++L ++       +  ++vvg +  gR+    
    KIR65326.1 269 AHWRGQLAGLGGRMALPADRPRPDVVGPAGEVVTAPVDAALVARLTELATACAASEFMVLLAAYAAFLARVAapggaaHAPEVVVGAPLGGRTAD-- 363
                   *******************999*99*********************************************963332225779***********97.. PP

                   CHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE.. CS
  Condensation 287 diermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvssv 383
                     e++vG+Fvn+lP+r++v +++tf +l+++v+ ++  a+ +q +pl+eLv d      ++ +pL ++++s  +    ++ +  +  ++ +   ++ 
    KIR65326.1 364 -DEDTVGMFVNVLPVRVRVGPDTTFRQLVTQVRGQVSAALAYQWTPLQELVADATAAAGAAGHPLTQVSISH-V----DDRAWHWAPAGATAARDVL 454
                   .589*******************************************************************9.7....8999999999999998877 PP

                   .E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC-----H CS
  Condensation 384 eaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqklselkllsd 450
                   +   ++ky+l  ++++   + t  +e + +lF +   e++  rl+  l ++ + p+++++    +++
    KIR65326.1 455 S-TGTAKYELLWTVTTGATSATSALEAAADLFTRGRAEELHGRLLADLTRLSAAPDAPVAATLSVPE 520
                   7.99************9999999***********************************998776665 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.1   4.3e-16   1.6e-12       3      67 .]      19      81 ..      17      81 .. 0.94
   2 !   39.9   0.0   1.1e-13     4e-10       3      67 .]    1088    1150 ..    1086    1150 .. 0.93

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 4.3e-16
  PP-binding  3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67
                + +++ +vl+++  +idp +d+fdlG+ Sl+ave++ +l+++ g++++l+ lf+++ + ++aa+l
  KIR65326.1 19 VHAAFGQVLRRD--RIDPAADFFDLGGQSLQAVEVALELRRRTGIAVDLDLLFTCRRPVDVAAHL 81
                678899999998..677**********************************************97 PP

  == domain 2  score: 39.9 bits;  conditional E-value: 1.1e-13
  PP-binding    3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  l ++++++lgv++  +++d+++f lG+ S+ a+ l++a+ ++fgv++   ++f  p  a+la+ +
  KIR65326.1 1088 LADIWRDLLGVAD--VAADSHFFALGGTSIKALHLVGAVHRRFGVDLRIVTVFRRPAFADLAREI 1150
                  789********95..569***********************************999999999865 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.3   4.8e-13   1.7e-09       1      76 []     965    1035 ..     965    1035 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 4.8e-13
                     HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C    1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                     evE +l  +p+V e aV +v  +    a+  + vl  g+ a + e+++++r++l++y+vp +++ v +lp t +GK
     KIR65326.1  965 EVERVLGDCPGVGEGAVLAVAAA---DAVELVAVLT-GP-ADPGEVREFLRANLPAYMVPARCHRVRRLPTTNNGK 1035
                     8*******************999...5555555552.42.1259*******************************9 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.14   4.9e+02       7      34 ..     137     164 ..     120     168 .. 0.79
   2 ?    7.2   0.0    0.0013       4.7      28      46 ..     592     610 ..     589     615 .. 0.88
   3 ?    0.2   0.0      0.21   7.7e+02      38      53 ..     931     946 ..     923     947 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.14
                     E-TTSSEEEEE-TTS-EEEEEE-GGGSS CS
  Prot_ATP_ID_OB   7 vlddteraiVktssdeevvvslagavpr 34 
                     ++d  e +  + ++d  ++v++a+a+p 
      KIR65326.1 137 LVDRHEALRTCFTADGRRLVRSAAALPW 164
                     5555555666778999999999999986 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0013
                     E-GGGSSST--TTEEEEEE CS
  Prot_ATP_ID_OB  28 lagavpremLrpgDlVavd 46 
                     lag++ ++ +rpgD+Vav 
      KIR65326.1 592 LAGHLVEAGVRPGDRVAVA 610
                     899999***********96 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.21
                     -TTEEEEEETTTTEEE CS
  Prot_ATP_ID_OB  38 rpgDlVavdkdtgfif 53 
                     r gDlV++ +d g++f
      KIR65326.1 931 RTGDLVRLLPDGGVVF 946
                     89*********99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.48
# Mc/sec: 7410.51
//
Query:       KIR65327.1  [L=400]
Description: NikQ protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-22   80.1   0.0    5.3e-16   58.4   0.0    3.1  3  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.8   0.0    0.0022        40      79     127 ..      73     121 ..      48     148 .. 0.81
   2 !   15.0   0.0   4.4e-07    0.0079     243     300 ..     202     256 ..     155     259 .. 0.81
   3 !   58.4   0.0     3e-20   5.3e-16     327     427 ..     265     353 ..     260     359 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.0022
                 HHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHH CS
        p450  79 rkpfkgkgvlfangekwkklRrfltptltsfgklsleelveeeaedlve 127
                 ++   g  +++a+g+++ +lR++++p l    ++sl ++v +e+++lv+
  KIR65327.1  73 PDKAGGGMLVVADGPQHGRLRSVIMPFLSRAMAESLDDVVRQEVRRLVA 121
                 44556777899999*********99988877666999999999999986 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 4.4e-07
                 HHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH CS
        p450 243 dalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklr 300
                 d+l++a  + +  s ++ +e+  +++++l++G +Tt ++++ +++ La+ P + + lr
  KIR65327.1 202 DDLISAL-AAD--SRFDLREVLLNCDNVLVGGNETTRHAIAGCFHALATSPGTLAGLR 256
                 4444443.222..58************************************9877766 PP

  == domain 3  score: 58.4 bits;  conditional E-value: 3e-20
                 HHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHH CS
        p450 327 vikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklf 425
                 v++E+ R  +++  ++ R++t dv ++g  +  G+ v+ +l a +rdp +f+ P+eF+p+R              +l+FG Gp+ C+G  lAr+el+ +
  KIR65327.1 265 VVEEVIRWTSPAM-HVLRVATDDVDLPGQRVSTGDAVVAWLPAANRDPRHFDAPDEFRPGRAA-----------NHLGFGYGPHHCLGAALARLELRAL 351
                 89**********9.999*******************************************932...........4799******************998 PP

                 HH CS
        p450 426 la 427
                 l 
  KIR65327.1 352 LL 353
                 85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2619.87
//
Query:       KIR65328.1  [L=564]
Description: hypothetical protein TK50_07730 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-13   50.8   0.0    1.5e-13   50.2   0.0    1.1  1  Condensation  Condensation domain
  ------ inclusion threshold ------
       0.04   14.2   0.0      0.085   13.2   0.0    1.5  1  DUF3085       Protein of unknown function (DUF3085)


Domain annotation for each model (and alignments):
>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   1.7e-17   1.5e-13      44     333 ..      62     334 ..      49     359 .. 0.81

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1.7e-17
                   HHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHHHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECC CS
  Condensation  44 lekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeeaieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHi 140
                   + +a  +l++rh+ LRtv++     e  Qv++ + +ve+ +le+  ++++       ++++ d  +pfd  ++ ++r+a+ + a   +  ++++ H+
    KIR65328.1  62 VLEAAGALVSRHEGLRTVYEAGPGVERAQVVSRSGHVEVTLLELGPQARD------RTWIT-DPPRPFDHGADFPVRMAVTTDAGVPVRAVFEFSHT 151
                   5678899************999999********************54444......36888.5888****************99999********** PP

                   T--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHHHHHHHHHHH......S---B.SS---SS--.-S-EEEEEEEE- CS
  Condensation 141 ivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdlekeeaYWseqlegelpvlqLpkd.karpakrsf.kadrlsikldee 235
                   ++D v  +i+l ++  l   ++  + + +p+  + +d ae e+  ++ +++ ++ +YW+ ql        Lp+    +pa r+   ++rl+   +  
    KIR65328.1 152 VADLVGANIVLDEFVGLV--ATPADRTAAPPAWQPADQAEYERTPEARRRMARTLDYWRRQLHT------LPPClVSTPARRQGpPEHRLATLRSTP 240
                   ******************..444445555555557999*************************7......666653333333330334455555889 PP

                   S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS- CS
  Condensation 236 teeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgyp 332
                   ++++l ++ak   vt  +vl +  + lL  +t +d+++    +s+R  +  ++++ vG      +l +  ++a +f e ++++  ++ +a+++ +++
    KIR65328.1 241 VAAALAEIAKRARVTPASVLVTTTATLLCWWTDTDRAMLEALYSNRALP--RMQDFVGSI-AQSAL-VPFAPAPSFHETLRQTHLNIFNAYQYAYFD 333
                   *************************************************..*******74.33333.334455667777777777777777776666 PP

                   H CS
  Condensation 333 l 333
                    
    KIR65328.1 334 A 334
                   5 PP

>> DUF3085  Protein of unknown function (DUF3085)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.5e-06     0.085      21      61 ..     494     534 ..     488     541 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.5e-06
     DUF3085  21 adgqkklvaYaeecdPktnpedwwevkrqelGgDdgvefld 61 
                 + g + lv Ya+ +dP+++p d +    ++lGg  g+ + d
  KIR65328.1 494 PVGARSLVGYAAPADPRVDPRDVHRAIMATLGGRHGATAPD 534
                 57999****************************98877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 3536.98
//
Query:       KIR65329.1  [L=211]
Description: hypothetical protein TK50_07740 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.11   12.0   0.0       0.16   11.5   0.0    1.3  1  Pribosyltran  Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.7e-06      0.16      89     128 ..     144     183 ..      98     200 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.7e-06
                   EEEEE-SEESSSHHHHHHHHHHHCC-BSEEEEEEEEE-HH CS
  Pribosyltran  89 kVliVDDildtGgTllaalelLkekgpeevriavlvdkpa 128
                   + li +D  +tG  ++  +++Lk +g++ v ++vl ++ +
    KIR65329.1 144 HALILEDTWTTGARVQSLAHALKVAGVATVAAIVLGRHVD 183
                   78*******************************9975554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1643.26
//
Query:       KIR65330.1  [L=303]
Description: nucleotide-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-64  215.1   0.2    8.7e-64  214.6   0.2    1.1  1  DNA_processg_A  DNA recombination-mediator protein A
    7.7e-06   25.6   6.0      6e-05   22.7   6.0    2.0  1  LDcluster4      SLOG cluster4 family
  ------ inclusion threshold ------
       0.85    9.6   6.1        1.8    8.6   2.5    2.8  3  YAcAr           YspA, cpYpsA-related SLOG family


Domain annotation for each model (and alignments):
>> DNA_processg_A  DNA recombination-mediator protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.6   0.2   1.5e-67   8.7e-64       3     186 ..      70     251 ..      68     264 .. 0.96

  Alignments for each domain:
  == domain 1  score: 214.6 bits;  conditional E-value: 1.5e-67
  DNA_processg_A   3 ekagiklltledkeYPeklkeikdpPlvLfvkGnlellekravaiVGtRkaseygkevakklakelaeagitivSGlAlGiDaaahraaleaggk 97 
                     +++gi + ++ d++YP++l  i+++P++Lf +G+l+l + rava+VG+R+as++g ++a+ +a  la +g+t+vSGlA GiD+aah+aaleagg+
      KIR65330.1  70 QADGIGVHAFFDATYPAQLLGIREMPPLLFSRGDLRL-HDRAVAVVGSRRASADGLRIARAVATTLAGRGVTVVSGLASGIDTAAHSAALEAGGR 163
                     678999******************************8.679****************************************************** PP

  DNA_processg_A  98 tvavlgtgldkiyPkenrklleeiaeegglllseyppgtkpkkenFpeRnriiaglseavlvveaaekSGalitaelAlelgrevfavp 186
                     tvav+gtg+ ++yP  nr+l+++ia + gll+s+++p+++p++++Fp+Rn +++g + a++vvea+e+SGa i+a+lAl++gr+v+   
      KIR65330.1 164 TVAVIGTGIRRYYPPDNRRLQDHIA-DVGLLISQFWPDAPPSRQSFPMRNAVMSGYAVATVVVEAGETSGARIQARLALQHGRPVVLTS 251
                     *************************.66*********************************************************9854 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   6.0     1e-08     6e-05       3     127 ..     110     251 ..     108     276 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1e-08
  LDcluster4   3 kigVmGsaeteakeealelaeelGrliAkegavlltGgrtGvmeaaskGakeagGltvGilpassekehsnk..........yvdiiiyT........G 83 
                  ++V+Gs +  a+ + l++a++++  +A +g+++++G  +G+ +aa  +a eagG tv ++     ++   +           v ++i           
  KIR65330.1 110 AVAVVGSRR--ASADGLRIARAVATTLAGRGVTVVSGLASGIDTAAHSAALEAGGRTVAVIGT-GIRRYYPPdnrrlqdhiaDVGLLISQfwpdappsR 205
                 699******..88889*****************************************977655.22221111233444554412333333666555545 PP

  LDcluster4  84 lglagRnlilv..lssdvviaiggrsGTlsEialaleegkpvivlk 127
                   + +Rn ++     + vv+  g +sG+     lal++g+pv++ +
  KIR65330.1 206 QSFPMRNAVMSgyAVATVVVEAGETSGARIQARLALQHGRPVVLTS 251
                 6677799988622455666777778899999999999999998877 PP

>> YAcAr  YspA, cpYpsA-related SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.5   0.00031       1.8       3      56 ..     111     163 ..     109     169 .. 0.87
   2 ?   -0.9   0.0      0.27   1.6e+03      32      58 ..     222     248 ..     213     261 .. 0.68
   3 ?    0.6   0.0     0.093   5.6e+02      24      40 ..     261     276 ..     253     282 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00031
       YAcAr   3 VlvtGgrd.fadleliwatLdklhaeapidmvlvhGgakGaDrlAarWAaergve 56 
                 V+v G+r   ad  +i ++  + +a  +  +++v+G a+G+D+ A + A e g  
  KIR65330.1 111 VAVVGSRRaSADGLRIARAVATTLAGRG--VTVVSGLASGIDTAAHSAALEAGGR 163
                 89999966599999*************9..8****************99887755 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.27
       YAcAr  32 mvlvhGgakGaDrlAarWAaergvelv 58 
                  v+v+ g++   r+ ar A ++g ++v
  KIR65330.1 222 TVVVEAGETSGARIQARLALQHGRPVV 248
                 566777774444888888888887775 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.093
       YAcAr  24 lhaeapidmvlvhGgak 40 
                 + ae+p  +++vhG a+
  KIR65330.1 261 AFAENP-GVYVVHGTAQ 276
                 568889.6999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1937.95
//
Query:       KIR65331.1  [L=99]
Description: hypothetical protein TK50_07750 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 679.84
//
Query:       KIR65332.1  [L=66]
Description: hypothetical protein TK50_07760 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-20   72.7   1.3    2.1e-20   72.5   1.3    1.0  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   1.3   1.2e-24   2.1e-20       2      54 .]      10      61 ..       9      61 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 1.2e-24
      DUF397  2 tWrKSsySgggggnCVEvaalpdavavRDSkdpdgpvLtftpaewaaFlagvk 54
                +W+KSs+S+++  +CVEv+++++av vRD+kd++gp+L+f+ ++w++Fl+g+k
  KIR65332.1 10 GWFKSSRSSNNA-ACVEVRFVGGAVDVRDTKDRSGPTLAFDGSSWSSFLTGLK 61
                6********998.6*********99**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       153  (0.00853366); expected 358.6 (0.02)
Passed bias filter:                      131  (0.0073066); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 502.84
//
Query:       KIR65333.1  [L=329]
Description: aldo/keto reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-69  233.6   0.0    3.3e-69  233.3   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.13   11.7   0.0        1.1    8.6   0.0    2.5  2  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.3   0.0   3.7e-73   3.3e-69       2     292 ..      28     327 ..      27     328 .. 0.97

  Alignments for each domain:
  == domain 1  score: 233.3 bits;  conditional E-value: 3.7e-73
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-..TTTHHHHHHHHHHHH.-TTTGGG-EEEEEE..--SSSTTSSSS-HHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevY..gkgqseellGealkk.srkkreeviiatKv..dlrdaeiksglskenireslees 93 
                   + lG+w+ +++   + e + +++rra++ Gi++fD+A+ Y   +g++ee++G++l+   +  r+e++i++K   d++++++ + +s++ +++sl++s
    KIR65333.1  28 VSLGLWHNFGP-DRPYERQRDIVRRAFDLGITHFDLANNYgpPPGSAEENFGRMLATdLKPYRDELVISSKAgyDMWPGPYGEWGSRKYLIASLDQS 123
                   67999*99998.88999999********************8879************999*************999999999999************* PP

                   HHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH...HHTTT--EEEEE-B-BTT.-HHHHTTHHHHHHHTT-EE CS
  Aldo_ket_red  94 lkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka...kkkkkvkivavqveynll.releeegllelckkkgvpl 186
                   l+r+g+dyvD+++ Hr dp++p +ee+++al+  v++Gk+ ++G+Sn++ e+ e+a   +++ ++++ ++q +y++l r  e  gll++++  g ++
    KIR65333.1 124 LRRMGLDYVDIFYSHRFDPDTP-LEETMGALDAIVRSGKALYVGISNYDSEKTERAaaiLRDLGTPLLINQPSYSMLdRWTERDGLLDTLERVGAGC 219
                   **********************.*********************************9**************************************** PP

                   EEBSTTGGGTTGTTTSS---SSSCCC-------.TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGG.G--- CS
  Aldo_ket_red 187 iaysplggGlltgkyqseedkedkeprkdlkrd.ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldal.elkl 281
                   ia+spl++Gllt +y    + ++  + +++ ++ +  ++++ ++++l e+a+ +g slaqlal++al  p+ +++i+gas+++qle+n++al +l++
    KIR65333.1 220 IAFSPLAQGLLTDRYLGGIPEDSRVRTSVFLNEsDLDEQKMATIRALGEVAARRGQSLAQLALAWALRDPRMTSLIIGASSVAQLEANVAALdNLDF 316
                   ***********************999999999878888999***************************************************667** PP

                   -HHHHHHHHHH CS
  Aldo_ket_red 282 seeevaeldel 292
                   ++ee+ae+d +
    KIR65333.1 317 TAEELAEIDGH 327
                   ********987 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.13   1.1e+03      63      98 ..      40      69 ..      19      82 .. 0.47
   2 ?    8.6   0.0   0.00012       1.1      69     104 ..     172     206 ..     122     282 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.13
                  CSHHHHHHHHHHHHHHHHHHTBSE..EEEEBCCGBCTT CS
  AP_endonuc_2 63 arreesvdalkraielaaaLGapl..lvlhpGtagagp 98
                  +      ++ ++ +++a +LG+ +  l ++ G    +p
    KIR65333.1 40 RP----YERQRDIVRRAFDLGITHfdLANNYG----PP 69
                  23....44444555555555555533333333....44 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00012
                   HHHHHHHHHHHHHHTBSEEEEEBCCGBCTTTSGHHH CS
  AP_endonuc_2  69 vdalkraielaaaLGapllvlhpGtagagpkgseee 104
                    ++++ra+ + ++LG+pll+++p+ ++ +++++e++
    KIR65333.1 172 SEKTERAAAILRDLGTPLLINQPS-YSMLDRWTERD 206
                   57899*****************99.55555555442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2271.27
//
Query:       KIR65334.1  [L=484]
Description: magnesium chelatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-07   29.4   0.1      0.014   14.8   0.0    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    5.5e-06   26.2   0.0    0.00052   19.8   0.0    2.3  2  Sigma54_activat  Sigma-54 interaction domain
    7.8e-06   25.9   0.0       0.12   12.3   0.0    2.4  2  AAA_5            AAA domain (dynein-related subfamily)
    0.00088   19.1   0.0     0.0058   16.5   0.0    2.2  2  AAA_3            ATPase family associated with various cellul
     0.0018   17.3   0.0       0.19   10.6   0.0    2.2  2  AAA_PrkA         PrkA AAA domain
  ------ inclusion threshold ------
      0.024   13.7   0.1      0.034   13.2   0.1    1.2  1  Asparaginase_2   Asparaginase
      0.028   14.4   0.0      0.046   13.6   0.0    1.3  1  NACHT            NACHT domain
      0.031   14.7   0.8      0.081   13.3   0.1    2.3  2  AAA_16           AAA ATPase domain
      0.054   14.0   0.0        0.1   13.1   0.0    1.4  1  ABC_tran         ABC transporter
       0.12   12.7   0.0       0.28   11.5   0.0    1.5  1  AAA_22           AAA domain


Domain annotation for each model (and alignments):
>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   5.5e-05     0.099      18      50 ..      68     100 ..      58     114 .. 0.88
   2 !   14.8   0.0   7.8e-06     0.014      92     159 ..     172     237 ..     165     252 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.5e-05
  Mg_chelatase  18 aaaGgHnlllvGppGsGKtmlakrlpsllppls 50 
                   a   gH+++l+G  G GKt l++ l +ll + +
    KIR65334.1  68 ALLAGHDMVLLGERGQGKTRLIRSLVALLDEWT 100
                   66679***********************97765 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 7.8e-06
  Mg_chelatase  92 GggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpc 159
                   G  ++++ G + ++++G++ ++Elp++ +++  +L + le++ ++++   ++++ p ++ lva++Np 
    KIR65334.1 172 GDPETIHFGLVPRTNRGIFAVNELPDLAERIQVALLNVLEERDIQVR--GYQLRLPLDLLLVASANPE 237
                   5566778899**********************************996..578899***********95 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.021        38      12      42 ..      62      92 ..      58     104 .. 0.82
   2 !   19.8   0.0   2.9e-07   0.00052      85     143 ..     178     236 ..     170     253 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.021
                     HHHHHHHCTSSS-EEEECSTTSSHHHHHHHH CS
  Sigma54_activat 12 leqikkvaktdlsvlitGesGtGKellarai 42
                     l +++++     +++++Ge G GK+ l r++
       KIR65334.1 62 LPEVERALLAGHDMVLLGERGQGKTRLIRSL 92
                     55778888888999**********9988776 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 2.9e-07
                      BEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS CS
  Sigma54_activat  85 kkGlfekadgGtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatne 143
                      + Gl+ +++ G+  ++e+ +l  ++Q+ Ll+vl+e+ ++  G +   ++d+ ++a++n 
       KIR65334.1 178 HFGLVPRTNRGIFAVNELPDLAERIQVALLNVLEERDIQVRGYQLRLPLDLLLVASANP 236
                      569999************************************************98874 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00014      0.26       1      25 [.      74      99 ..      74     111 .. 0.85
   2 !   12.3   0.0   6.9e-05      0.12      31     138 .]     146     253 ..     136     253 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
                EEEEE--SSSSHHHHHHHGGGGB.S- CS
       AAA_5  1 dvlLvGppGtgKselaerlaaal.nr 25
                d++L+G+ G gK++l+++l a+l ++
  KIR65334.1 74 DMVLLGERGQGKTRLIRSLVALLdEW 99
                589******************99543 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 6.9e-05
                 E--TT--HHHHH--B--...........--------....G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---......-EEEEEESS- CS
       AAA_5  31 qltrdtteedlkgrreik..ngttslvdsplvraar....egeilvlDEveraesevlnsLlslleerrllleeggelvkaknddllerfrviatanpl 123
                 + t dt+  dl+g +++    +++ l d +    +     +  i+ ++E+  +   ++ +Ll++leer ++   g  + + + d     + ++a+anp 
  KIR65334.1 146 LATPDTSVGDLIGDVDPIriAQGRTLGDPETIHFGLvprtNRGIFAVNELPDLAERIQVALLNVLEERDIQ-VRGY-QLRLPLD-----LLLVASANPE 237
                 56667777777777776666444444444444455566667789999************************.3444.4445554.....9********* PP

                 -..-TT-TTHHHHTT- CS
       AAA_5 124 d.rslnelspalrsRf 138
                 d   + ++  +l++Rf
  KIR65334.1 238 DyTNRGRIITPLKDRF 253
                 *988889999999998 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.61   1.1e+03       3      24 ..      76      97 ..      74     101 .. 0.83
   2 !   16.5   0.0   3.2e-06    0.0058      69     118 ..     193     242 ..     148     254 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.61
       AAA_3  3 llegvPGlaktllvkalakald 24
                +l g  G +kt+l+++l   ld
  KIR65334.1 76 VLLGERGQGKTRLIRSLVALLD 97
                5667889*********998876 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 3.2e-06
       AAA_3  69 deinrappktqsalleameerqvtvegethklpepflvlatqnPieqeGt 118
                 +e+   + ++q all+++eer++ v+g + +lp  +l++a  nP +++  
  KIR65334.1 193 NELPDLAERIQVALLNVLEERDIQVRGYQLRLPLDLLLVASANPEDYTNR 242
                 666667789***********************************887655 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0082        15      92     135 ..      76     119 ..      66     135 .. 0.83
   2 !   10.6   0.0   0.00011      0.19     200     350 ..     153     298 ..     146     305 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0082
    AAA_PrkA  92 yllGPvggGksslverlkklleaa.piyalegsPvfeePlhli.pe 135
                  llG  g Gk+ l+ +l  ll++  p  ++ gs ++e+P+h + p 
  KIR65334.1  76 VLLGERGQGKTRLIRSLVALLDEWtP--VIAGSVLNEHPMHPLtPA 119
                 799******************98746..578999999999976454 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00011
    AAA_PrkA 200 isalvGkvdirkleey.sendpdaysysGalnranrGllefvemfkadikvlhplltatqegnyksteklslipfdgiilahsnesewkkfksnkknea 297
                 + +l+G vd  ++++  +  dp+   + G + r+nrG++   e+    +++   ll +  e+ ++  +    +p d +++a +n  ++++    +    
  KIR65334.1 153 VGDLIGDVDPIRIAQGrTLGDPETIHF-GLVPRTNRGIFAVNELPDLAERIQVALLNVLEERDIQVRGYQLRLPLDLLLVASANPEDYTN--RGRIITP 248
                 6689*****77777764889**99988.99******************************************************999985..4566677 PP

    AAA_PrkA 298 lldri.vvvkvPyclrvseekkiyekllkeseladahiaPetlevlarfsiltr 350
                 l dr    ++  y l ++ e  +   + +e++l  a +  ++levlarf+   r
  KIR65334.1 249 LKDRFgAEIHTHYPLGLELELAL---IRQEADL-VADVPEHVLEVLARFARAVR 298
                 88887456888888888777654...4567777.67788888888888876655 PP

>> Asparaginase_2  Asparaginase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.9e-05     0.034     169     207 ..     307     354 ..     274     360 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.9e-05
                     T........TT---EEEEEE-TTS-EEEEEEE--STTB-.TTEE-STT CS
  Asparaginase_2 169 k........aklgTvGaValDsegnlAaaTSTgGltnkl.vGRvGDsp 207
                     +        a + Tv a al ++g lAa  ST G++ +  v RvGD+ 
      KIR65334.1 307 SgvsarfaiAAAETVAAAALRRSGLLAADASTEGVREEApVARVGDAV 354
                     1333334446667***********************998359****86 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.6e-05     0.046       3      29 ..      75     101 ..      73     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.6e-05
                 EEEEC-TTTCHHHHHHHHHHHHCTS-S CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegkl 29 
                 ++l Ge G+GKT L+++l+ ++ e+++
  KIR65334.1  75 MVLLGERGQGKTRLIRSLVALLDEWTP 101
                 799******************999875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   4.5e-05     0.081      27      51 ..      75      99 ..      64     329 .. 0.86
   2 ?   -2.7   0.0       3.7   6.7e+03       4      23 ..     372     389 ..     370     401 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.5e-05
      AAA_16 27 vllsGesGvGKsslvrellralekd 51
                ++l Ge+G GK++l+r+l   l + 
  KIR65334.1 75 MVLLGERGQGKTRLIRSLVALLDEW 99
                789***************9555444 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.7
      AAA_16   4 GReeeleqLlsalervrsgr 23 
                 GRe e+  L+++l+++ +++
  KIR65334.1 372 GREVEI--LAHLLRTATADT 389
                 555555..888888777665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.6e-05       0.1       7      50 ..      68     114 ..      62     142 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.6e-05
                 EEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxx RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlk 50 
                  l +g+ ++++Ge G GK+ L++ l  ll+      +G++ l++++++
  KIR65334.1  68 ALLAGHDMVLLGERGQGKTRLIRSLVALLDEwtpvIAGSV-LNEHPMH 114
                 56789999*****************999987777778887.6666655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00015      0.28       9      32 ..      76      99 ..      74     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
      AAA_22  9 vvtGesGtGKTtllrrlleqldee 32
                v+ Ge G GKT+l+r l+  lde+
  KIR65334.1 76 VLLGERGQGKTRLIRSLVALLDEW 99
                899******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3248.07
//
Query:       KIR65335.1  [L=650]
Description: hypothetical protein TK50_07800 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-08   32.9   0.0    7.6e-07   29.8   0.0    2.6  1  VWA_2         von Willebrand factor type A domain
  ------ inclusion threshold ------
      0.039   14.3   0.6       0.16   12.3   0.6    2.0  1  NifQ          NifQ
      0.072   13.3   0.0       0.27   11.4   0.0    1.9  1  VWA           von Willebrand factor type A domain
       0.32   11.3   8.3        8.9    6.6   0.5    3.2  2  DUF4226       Domain of unknown function (DUF4226)
        3.8    8.3   5.1         25    5.8   0.3    4.1  4  TPR_6         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   2.1e-10   7.6e-07       1     107 []     463     560 ..     463     560 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.1e-10
       VWA_2   1 lvfvlDtSgSmrngdygptrleaakdaveallksl....pgdrvglvtfsdgpevlipltkdkakilnalrnleak.gggtnlaaaLqlarkalkkrrk 94 
                 + +++D S Sm ++     r+  +k+ + al++ +    p d + ++ f+ ++    plt+      ++l ++e++ ++gtnl+ aL+la  +l++ + 
  KIR65335.1 463 VALCVDLSYSMISQG----RWGPMKQTALALSHLMatrfPQDALQIIGFGRQAA---PLTQ------AELAAVEPDlQQGTNLQHALRLAGRHLRRHP- 547
                 579********6664....888888888887774444469**********9875...7887......677788888889****************998. PP

       VWA_2  95 gekrvivlitDge 107
                 g++ v++++tDge
  KIR65335.1 548 GAEPVVLVVTDGE 560
                 ***********96 PP

>> NifQ  NifQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   4.6e-05      0.16      30     113 ..     155     257 ..     148     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.6e-05
        NifQ  30 LlerlfpgaeaaleaaalaeeleeeraeeeedlralLlehaseea....................eeerwlaaivarrsleedhLWqdLgLasraeLsa 108
                 +le+ f+g++ a ++aa   + +++ ae ++dl++lL++ha++e+                    +  + l  ++arr+ + + L + L  ++r+eL  
  KIR65335.1 155 VLEQRFAGLRDA-ARAAGGPQVQRQLAEMMRDLNDLLARHARSEDttdafaefmrrhgeffpeqpRDVDELVDVLARRAAAGERLMRSLSDRQREELAG 252
                 566777777764.667777788888889999999999999998888888888888888888765444679***************************** PP

        NifQ 109 llerh 113
                 l+++ 
  KIR65335.1 253 LMRES 257
                 **986 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.6e-05      0.27       2     121 ..     463     568 ..     462     572 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.6e-05
                 EEEEEE-STTS.CHHHHHHHHHHHHHHHHHHTBTTTTEEEEEEEESSSEEEEEETTSHCHHHHHHHHHHTGSGGGGSSC-HHHHHHHHHHHHHHHHGTS CS
         VWA   2 ivfvlDgSgsm.geenfekvkefikklveklevgpegtrvglvqfssevktefslndysskeellsalnnlkysgggttntgkalkyaleklfkssaga 99 
                 +++ +D S sm +++++  +k+ +  l   +    +++ + ++ f+   ++ ++l++ +  +++  +l++      gt+ +  al  a ++l ++    
  KIR65335.1 463 VALCVDLSYSMiSQGRWGPMKQTALALSHLMATRFPQDALQIIGFG---RQAAPLTQAE-LAAVEPDLQQ------GTN-LQHALRLAGRHLRRHPG-- 548
                 5678888888888888887777777777777766688888888888...5667777755.2333333333......566.77777777775555554.. PP

                 STTSEEEEEEEESS--CSS.HTH CS
         VWA 100 RenakkviilltdGksndg.dpk 121
                    a+ v++++tdG+++   dp+
  KIR65335.1 549 ---AEPVVLVVTDGEPTAHlDPD 568
                 ...59***********9844665 PP

>> DUF4226  Domain of unknown function (DUF4226)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.1    0.0026       9.2       2      98 ..     102     198 ..     101     211 .. 0.85
   2 ?    6.6   0.5    0.0025       8.9      19      58 ..     318     358 ..     303     367 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0026
     DUF4226   2 rGsaadAarareaaLaqrlsataelDrqlaevlrsahakaaegrrrLdalqaei.dqavatqalaldTpaGarqfqrfLiaklreiakvVadasedsr 98 
                 rG   +Aar +ea L +   +ta++ r+la +    +++ ++ rr Ld l  ++ +q  a  + ++   aG  q+qr L+  +r+ +++ a  +  ++
  KIR65335.1 102 RGRDDEAARFAEAVLDNLPRSTARAVRELAGYEWASEEARQAYRRILDGLRGDVlEQRFAGLR-DAARAAGGPQVQRQLAEMMRDLNDLLARHARSED 198
                 5778899***************************9***************9998356677777.9999*******************99987554443 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0025
     DUF4226  19 rlsatael.DrqlaevlrsahakaaegrrrLdalqaeidqa 58 
                 +++  a l D ++++v r + + aa++ rrL +l++e++++
  KIR65335.1 318 QEHPGATLdDVDVEAVARTLGRDAADDVRRLRELERELRRQ 358
                 444455551557888889999****************9986 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.21   7.5e+02      13      29 ..      73      92 ..      63      95 .. 0.71
   2 ?    5.8   0.3    0.0071        25       2      33 .]      88     122 ..      87     122 .. 0.89
   3 ?    1.4   0.1      0.17     6e+02      17      28 ..     138     149 ..     134     149 .. 0.88
   4 ?   -3.0   0.0       4.4   1.6e+04      15      32 ..     178     195 ..     174     196 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.21
                H...HHHHHHHHHHHHHHHH CS
       TPR_6 13 l...gdtdkAlealerlike 29
                +   gd d A++  + l+++
  KIR65335.1 73 AlrrGDLDGAVTRARALLDQ 92
                14446999999988888875 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0071
                 HHHHHHHHHHH.H..HHHHHHHHHHHHHHHH-TT- CS
       TPR_6   2 Alyklalsyrk.l..gdtdkAlealerlikeYPdS 33 
                 Al+ +al+ ++    g+ d+A +  e ++++ P S
  KIR65335.1  88 ALLDQALAAERdElrGRDDEAARFAEAVLDNLPRS 122
                 889999999985599****************9987 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHH CS
       TPR_6  17 dkAlealerlik 28 
                 ++A++a++r+++
  KIR65335.1 138 EEARQAYRRILD 149
                 89*******985 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 4.4
                 HHHHHHHHHHHHHHH-TT CS
       TPR_6  15 dtdkAlealerlikeYPd 32 
                 + ++ ++ l++l+ ++  
  KIR65335.1 178 QLAEMMRDLNDLLARHAR 195
                 677888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.23s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4673.02
//
Query:       KIR65336.1  [L=175]
Description: hypothetical protein TK50_07805 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1331.71
//
Query:       KIR65337.1  [L=94]
Description: hypothetical protein TK50_07820 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-32  110.6   0.1    2.8e-32  110.4   0.1    1.0  1  NTP_transf_9  Domain of unknown function (DUF427)


Domain annotation for each model (and alignments):
>> NTP_transf_9  Domain of unknown function (DUF427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.1   1.6e-36   2.8e-32       2      93 .]       3      89 ..       2      89 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 1.6e-36
                  EEE-SS-EEEEES--EEEEETTS--EEEB-GGGB-GGGEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEESS--TT-GGGTT-BEE-TT CS
  NTP_transf_9  2 rvklngtvvaetddavvveetglppryYfppedvklellkpsdtttvCpwKGeasyyslavdgkevkdaaWsYpeptpeaaeikgyvaFyae 93
                  ++++n+ v+a++dd+vvve+     ++Yfp+++++ ++l++s t+t+CpwKG+asyy+l+ dg+  +da+W+Yp+p+pea+ ++++vaF+++
    KIR65337.1  3 KAVWNDLVIADSDDTVVVEG-----NHYFPRAALRDDVLRDSGTHTFCPWKGTASYYTLEHDGRSSADAVWYYPDPKPEAEMVRDRVAFWKD 89
                  689*****************.....*****************************************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 723.81
//
Query:       KIR65338.1  [L=465]
Description: FAD-linked oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-11   43.7   0.2    3.6e-11   43.0   0.2    1.4  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.2     2e-15   3.6e-11      48     138 ..      53     142 ..      23     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 2e-15
                    EEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCGSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  48 ldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgipgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                    ld+s l +++ +d+ ++ta v++ +t+++lv+a+ ++gl+  + p+   + t+GGa+ + ++ ++s ++Gl ++ vl+l+v+++ Ge+v++
     KIR65338.1  53 LDVSGLGGVIGVDPVARTADVQGMCTYERLVAATLPHGLMPLVVPQLR-TITLGGAVTGLGIESTSFRHGLPHESVLELDVLTGAGEIVTA 142
                    89989***********************************99888886.77*************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3564.57
//
Query:       KIR65339.1  [L=447]
Description: cyclopropane-fatty-acyl-phospholipid synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-96  320.8   0.0    7.9e-96  320.5   0.0    1.0  1  CMAS             Mycolic acid cyclopropane synthetase
    2.8e-11   43.5   0.0      5e-11   42.7   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    1.3e-10   41.9   0.0    2.9e-10   40.7   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
    1.6e-10   41.5   0.0    3.5e-10   40.4   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
      1e-06   29.4   0.0    2.6e-06   28.1   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
    7.6e-05   22.5   0.0    0.00012   21.9   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
     0.0042   16.6   0.0     0.0068   16.0   0.0    1.3  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.016   14.8   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
      0.052   13.1   0.0      0.077   12.5   0.0    1.2  1  DOT1             Histone methylation protein DOT1
      0.062   13.0   0.0        0.1   12.3   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.5   0.0   4.4e-99   7.9e-96       1     273 []     156     426 ..     156     426 .. 0.98

  Alignments for each domain:
  == domain 1  score: 320.5 bits;  conditional E-value: 4.4e-99
                 .XSXXXHHHHHHHHTS-HHHHCTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHH CS
        CMAS   1 qkkkkevenikahYDlsndffalfldptmtYsCAyferddmtLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqak 99 
                 +++++++++i++hYD+sn+f++l+l+p+mtY+CA+f+++d+tLe+Aq aK+dl+ +kl+lkpGm+lLd+GcGWG++vr+a+++y+vk +g+TlS+ qa+
  KIR65339.1 156 HSRTRDSTAISHHYDVSNAFYELVLGPSMTYTCAVFRSPDDTLEQAQAAKYDLVAGKLGLKPGMRLLDVGCGWGGMVRHAAREYGVKALGVTLSRAQAQ 254
                 578999********************************************************************************************* PP

                 HHHHHHHTS-SSS-EEEEES-GGG---.--SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---B CS
        CMAS 100 lakkrvdeldlerkvevklldyedlde.kvdrvvsvgafehvgkenydtffkklkkllkedGllllhtitslhkkelaerglklkfidkeiFPgGelps 197
                 +a++++++++l++ +ev+ ldy+d +  ++d ++s+g++eh+g++ny+++f++l   l+ +G+ll+h+it+ +++  +  g   +fid+++FP+Gel+ 
  KIR65339.1 255 WAQAAIEREGLSELAEVRHLDYRDAPReQFDVISSIGLTEHIGVRNYPAYFRALGGRLRVGGRLLNHCITRADNRAPHRSG---AFIDRYVFPDGELAG 350
                 ************************9866**********************************************9999655...8************** PP

                 HHHHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHHHHHHSHHHHHHHHHHHHHHHHHHHHTTSCEEEEE CS
        CMAS 198 ieeieeeiseagftvvdveslrahYakTLkaWaealqenkdeaialvseevarmyelYLagcaeaFrkgyidvaql 273
                   ++++ei++ag++v + e+lr+hYa TL  W+ +l +++de +a v++ +ar++ lY+ag++ aF+++ i+++q+
  KIR65339.1 351 PGRLISEIHDAGLEVHHEENLRQHYALTLAGWCRNLVAHWDECVAEVGQGTARVWGLYMAGSRLAFERNEIQLHQV 426
                 **************************************************************************96 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   2.8e-14     5e-11      11     125 ..     204     331 ..     194     385 .. 0.74

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 2.8e-14
  Methyltransf_23  11 dklerllpk..lraggrvLdiGcGtGillevl.rengfsvtgvDlspeaveiae.........kakkaqkdqfdeqeaaepqgkfdlIvlrevl 92 
                      +k++ +++k  l++g+r+Ld+GcG G + +++ re+g++  gv ls+++ ++a+         +    ++  +    ++ p ++fd+I+++ ++
       KIR65339.1 204 AKYDLVAGKlgLKPGMRLLDVGCGWGGMVRHAaREYGVKALGVTLSRAQAQWAQaaiereglsELAEVRHLDY----RDAPREQFDVISSIGLT 293
                      56666666666899*****************98888************9999987777765554444444444....666999*********** PP

  Methyltransf_23  93 ehvp..dppellrqiatllkpgGylllseplasl...k 125
                      eh+   ++p+++r ++  l+ gG+ll + +++ +   +
       KIR65339.1 294 EHIGvrNYPAYFRALGGRLRVGGRLLNHCITRADnraP 331
                      **98889*******************999876543331 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   1.6e-13   2.9e-10       2      97 .]     222     316 ..     221     316 .. 0.95

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.6e-13
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      Ld+GcG G +++++a+++g  k +gv +s ++ + a++ +e+egl   +e+++ d +d p   ++fD++ s+g  +h+  ++++++++ +   L
       KIR65339.1 222 LDVGCGWGGMVRHAAREYG-VKALGVTLSRAQAQWAQAAIEREGLseLAEVRHLDYRDAPR--EQFDVISSIGLTEHIGVRNYPAYFRALGGRL 312
                      9*****************8.*************************9999999999999995..57******988***************99999 PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      + gG
       KIR65339.1 313 RVGG 316
                      9998 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0     2e-13   3.5e-10       1      94 [.     222     318 ..     222     320 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 2e-13
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvLk 89 
                      LdvGcG G ++++ a+ +  + +gv ls ++ ++a++++++egl    e+++ d ++   + ++fD++ s    +h+   +  ++++ +   L+
       KIR65339.1 222 LDVGCGWGGMVRHAAREYgVKALGVTLSRAQAQWAQAAIEREGLseLAEVRHLDYRD--APREQFDVISSIGLTEHIgvRNYPAYFRALGGRLR 313
                      8**************6666************************96555556666665..55679*************999999****9999999 PP

                      EEEEE CS
  Methyltransf_11  90 pgGll 94 
                       gG+l
       KIR65339.1 314 VGGRL 318
                      99998 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.5e-09   2.6e-06       1      99 []     222     318 ..     222     318 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.5e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldnirkl 92 
                      L++GcG G ++r+ +++  +++ +gv +s+++ + a++ + +++    ++v+  +  ++   ++++fD++ ++++ +h+  ++  ++++ +   
       KIR65339.1 222 LDVGCGWGGMVRHAARE-YGVKALGVTLSRAQAQWAQAAIEREGLSELAEVRHLDYRDA---PREQFDVISSIGLTEHIgvRNYPAYFRALGGR 311
                      8**************99.9**************88888888888877777777777654...557**************999999********* PP

  Methyltransf_12  93 LkpgGrl 99 
                      L+ gGrl
       KIR65339.1 312 LRVGGRL 318
                      *****97 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   6.7e-08   0.00012       2     107 ..     216     318 ..     215     348 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 6.7e-08
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevl..naladpdk 92 
                      + g+r+lD+GCG G  +  +a+e g   +  G+  s    + A++  ++ gl+  +e+++ d  +++    +e+fD+i s ++     + + ++
       KIR65339.1 216 KPGMRLLDVGCGWGGMVRHAAREYG--VKALGVTLSRAQAQWAQAAIEREGLSeLAEVRHLDYRDAP----REQFDVISSIGLTehIGVRNYPA 303
                      6799*****************8765..7899*********************967899999999999....589****9988775555555555 PP

  Methyltransf_31  93 ileeiervlkpggil 107
                      +++ +   l+ gg+l
       KIR65339.1 304 YFRALGGRLRVGGRL 318
                      555555555555555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.8e-06    0.0068      31     101 ..     217     287 ..     203     289 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.8e-06
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS-EEEE CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeveekkfdli 101
                    ++lD+GcG+G +  ++a+e+   ++ ++   a+A + a++ +e+++l+  +ev++ d  ++   ++fd+i
  KIR65339.1 217 PGMRLLDVGCGWGGMVRHAAREYGVKALGVTLSRAQA-QWAQAAIEREGLSelAEVRHLDYRDAPR-EQFDVI 287
                 55679****************9999777666655555.889999****99999*******999998.9***98 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   8.9e-06     0.016      11      78 ..     215     286 ..     205     319 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.9e-06
        MetW  11 ikpgsrvldlGcGdGellellkeekqvdgrGleldeegva...ecvak.Glsviqgdldkdlenfedksfdy 78 
                 +kpg r+ld+GcG G +++  + e +v++ G+ l+++  +   +++++ Gls + +    d    + ++fd+
  KIR65339.1 215 LKPGMRLLDVGCGWGGMVRHAAREYGVKALGVTLSRAQAQwaqAAIEReGLSELAEVRHLDYRDAPREQFDV 286
                 6899****************************9998765311134433366666666666666666666665 PP

>> DOT1  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.3e-05     0.077      35      85 ..     210     259 ..     202     279 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.3e-05
                 HHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE--HHHHHHHHHH CS
        DOT1  35 ldkvnlkkedvFvDLGSGvGnvvlqaalevgcklsvGvEimdnaselaekq 85 
                   k+ lk+    +D G G G +v  aa e+g+k ++Gv ++ + ++ a++ 
  KIR65339.1 210 AGKLGLKPGMRLLDVGCGWGGMVRHAAREYGVK-ALGVTLSRAQAQWAQAA 259
                 568999***************************.9**********999875 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.7e-05       0.1      69     126 ..     213     268 ..     196     284 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.7e-05
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenv 126
                 l lk+g+r L+vG+G G      ar  g k+  +++  ++  ++ a++ +++++l+++
  KIR65339.1 213 LGLKPGMRLLDVGCGWGGMVRHAAREYGVKA--LGVTLSRAQAQWAQAAIEREGLSEL 268
                 66*************9987766666666655..6777777777778888888877755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3513.45
//
Query:       KIR65340.1  [L=282]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-22   80.2   1.3    1.2e-11   44.9   0.0    2.2  2  AHSA1            Activator of Hsp90 ATPase homolog 1-like pro
    1.8e-14   54.2   8.1      1e-08   35.6   1.3    2.3  2  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
  ------ inclusion threshold ------
      0.084   13.1   1.5        7.8    6.7   0.1    2.9  2  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
       0.14   12.3   0.3        1.3    9.1   0.1    2.4  3  DUF2505          Protein of unknown function (DUF2505)


Domain annotation for each model (and alignments):
>> AHSA1  Activator of Hsp90 ATPase homolog 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.3   5.2e-12   2.4e-08       1     125 []      12     133 ..      12     133 .. 0.81
   2 !   44.9   0.0   2.8e-15   1.2e-11       2     105 ..     156     247 ..     155     263 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 5.2e-12
                 SS-HHHHHHHHH-HHHHHHHEEEEEEEE--STTEEEEE..EETTTSEEEEEEEEEEEEETTTEEEEEEEEETSETEEEEEEEEEEEEETTEEEEEEEEE CS
       AHSA1   1 dapperVfraltdpellkrWftlteaemdlrpGgkfrl..rdspdgkefgnegeylevvpperlvytwrledepeeeestvtieleeegggTrltltht 97 
                 +ap+e+V raltdp++l+ W   ++ae++l   +++ +  r +p+g++ +++       +++ l + w l+    + e+t++++le+ g+ T ltl+++
  KIR65340.1  12 AAPVETVHRALTDPAELRVW-LAEHAEVEL--PKRYAFwgRYTPEGDAPHQRL---LHADERTLRFGWLLD----GVETTTEFTLEPDGDATILTLRQS 100
                 59******************.888888888..567777777888888888885...56678889***9888....889********************6 PP

                 EEEHCHHHHHH.....HHHHHHHHHHHHHHHHH CS
       AHSA1  98 glprkqkeeeg.....veeGweqsldqLkalle 125
                  ++  ++          +  w  ++++L+a+le
  KIR65340.1 101 HFDFAEAMSGStirgvLQTYWALAIANLAAHLE 133
                 666666555444444588889988888888875 PP

  == domain 2  score: 44.9 bits;  conditional E-value: 2.8e-15
                 S-HHHHHHHHH-HHHHHHHEEEEEEEE--STTEEEEEEETTTSEEEEEEEEEEEEETTTEEEEEEEEETSETEEEEEEEEEEEEETTEEEEEEEEEEEE CS
       AHSA1   2 apperVfraltdpellkrWftlteaemdlrpGgkfrlrdspdgkefgnegeylevvpperlvytwrledepeeeestvtieleeegggTrltlthtglp 100
                 ap ++V++ ltd+++  +W  +  + +++  Gg++ +     g e g+ +++ +++p +r+++ w       +   ++t+el e +g T+lt++++g++
  KIR65340.1 156 APLAKVYESLTDSAQASAW-FGYPIGIEPWIGGRYAM----GGFESGYAAKVVDLEPGRRMSIDW-------GPTGVTTWELAESQGRTKLTFVQSGFD 242
                 89*****************.99999************....899999*****************9.......5578**********************9 PP

                 HCHHH CS
       AHSA1 101 rkqke 105
                 ++   
  KIR65340.1 243 EQNPP 247
                 98765 PP

>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   1.3   2.3e-12     1e-08       4     143 .]       5     133 ..       2     133 .. 0.87
   2 !   22.4   0.8   2.7e-08   0.00012       9     117 ..     153     251 ..     146     265 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 2.3e-12
                      EEEEEEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSESTSSSTTTEEEEECCCSSEEEEEEEEEETTTTEEEEEEE.SSS-TSEEEEEEEEEC CS
  Polyketide_cyc2   4 vtvsvviaappekVwalvsdfenwprWhpevarveleggggpargvegtvrvggrgtvreelvevdpegrllsyrivkpvpvanyvatwtvtpd 97 
                      +tv+++ aap+e+V ++++d+++++ W  e a+vel++        +g+++  g +  +++l+ +d++  ++++ +    +v+  ++++t++pd
       KIR65340.1   5 MTVRARLAAPVETVHRALTDPAELRVWLAEHAEVELPK--RY--AFWGRYTPEG-DAPHQRLLHADERTLRFGWLL---DGVE-TTTEFTLEPD 89 
                      578899*****************************996..55..5679***999.899********9888888888...5666.7888****** PP

                      CETEEEE.EEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  98 gggtrvt.wtgefdagplggpfekpaaakavkgdleagLerLkarle 143
                      g+ t +t  + +fd+   +  +++ +++  ++ +   ++++L+a+le
       KIR65340.1  90 GDATILTlRQSHFDF---AEAMSGSTIRGVLQTYWALAIANLAAHLE 133
                      ****99987888885...46777888999999999999999999987 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 2.7e-08
                      EESS-HHHHHHHHTTTTGGGGT-TTEEEEECSESTSSSTTTEEEEECCCS.SEEEEEEEEEETTTTEEEEEEE.SSS-TSEEEEEEEEECCETE CS
  Polyketide_cyc2   9 viaappekVwalvsdfenwprWhpevarveleggggpargvegtvrvggr.gtvreelvevdpegrllsyrivkpvpvanyvatwtvtpdgggt 101
                       iaap +kV++ ++d ++ ++W          g  +p  +++g++++gg  +    ++v+++p gr++s++     p++  v+tw++++  g t
       KIR65340.1 153 LIAAPLAKVYESLTDSAQASAWFGYP-----IG-IEP--WIGGRYAMGGFeSGYAAKVVDLEP-GRRMSIDW---GPTG--VTTWELAESQGRT 232
                      59********************8843.....34.789..999*******996699********.********...4655..99********999 PP

                      EEE.EEEEEEE..E--TT- CS
  Polyketide_cyc2 102 rvt.wtgefda..gplggp 117
                      ++t  +  fd   +p +++
       KIR65340.1 233 KLTfVQSGFDEqnPPYAAW 251
                      9886566677553333344 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0017       7.8       1      64 [.      11      91 ..      11     128 .. 0.72
   2 ?    4.7   0.1    0.0074        33       1      25 [.     154     178 ..     154     257 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0017
                    ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE.....E.................EEECSTTSSCEEEEEEEEEEETTT CS
  Polyketide_cyc  1 vpapadqvyalvadvesypeflphcssvevleeaes..glsa.................dlevgfggltesftarvtldppee 64
                    ++ap+++v ++++d   +  +l +  +ve+ ++     +                    +l+ g+   + + t++ tl+p+ +
      KIR65340.1 11 LAAPVETVHRALTDPAELRVWLAEHAEVELPKRYAFwgR--YtpegdaphqrllhaderTLRFGWLLDGVETTTEFTLEPDGD 91
                    589***********************9999888885432..134666666666666666666666666666666666666655 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0074
                     ESS-HHHHHHHHTTTGGCCSCCCCE CS
  Polyketide_cyc   1 vpapadqvyalvadvesypeflphc 25 
                     ++ap+++vy+ ++d  + + ++ + 
      KIR65340.1 154 IAAPLAKVYESLTDSAQASAWFGYP 178
                     6899999999999999999998754 PP

>> DUF2505  Protein of unknown function (DUF2505)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00029       1.3       2      24 ..       7      29 ..       6      42 .. 0.81
   2 ?   -2.4   0.0         1   4.5e+03     101     120 ..      78      97 ..      61     101 .. 0.77
   3 ?   -0.3   0.0      0.24   1.1e+03       6      20 ..     154     168 ..     149     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00029
     DUF2505  2 vsaeypapvdrvyaaltdeeywe 24
                v+a+++apv++v++altd++ ++
  KIR65340.1  7 VRARLAAPVETVHRALTDPAELR 29
                67999*************98555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1
     DUF2505 101 velsGtltLepegegtrlev 120
                 ve++ ++tLep+g+ t l++
  KIR65340.1  78 VETTTEFTLEPDGDATILTL 97 
                 47778888888888776665 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.24
     DUF2505   6 ypapvdrvyaaltde 20 
                 ++ap+++vy+ ltd 
  KIR65340.1 154 IAAPLAKVYESLTDS 168
                 689*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2307.56
//
Query:       KIR65341.1  [L=77]
Description: hypothetical protein TK50_07845 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-09   35.9   0.2    1.2e-08   35.6   0.2    1.1  1  zinc_ribbon_15  zinc-ribbon family
  ------ inclusion threshold ------
      0.033   14.3   0.7          9    6.5   0.1    2.2  2  Zn-ribbon_8     Zinc ribbon domain
      0.047   13.4   2.2        5.4    6.9   0.1    2.2  2  zinc_ribbon_2   zinc-ribbon domain
       0.12   11.9   2.1          3    7.4   0.3    2.2  2  zf-ribbon_3     zinc-ribbon domain
       0.25   11.3   3.6        3.2    7.8   4.2    2.0  2  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
        1.2    9.1   5.9          6    6.8   0.8    2.3  2  DUF35_N         Rubredoxin-like zinc ribbon domain (DUF35_N)


Domain annotation for each model (and alignments):
>> zinc_ribbon_15  zinc-ribbon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.2     4e-12   1.2e-08       2      52 ..      20      69 ..      19      75 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 4e-12
  zinc_ribbon_15  2 lCpkCgklskaelvkkkkvlklffipvfkwkkkkpylacskCkslleaske 52
                    +C +Cg+    ++ ++++ ++lffip++++++ +++ +c+ C++ + +s  
      KIR65341.1 20 VCRNCGNHAAQVISRRSTKFTLFFIPLIPIRT-RYAQQCTFCGAQYDISAA 69
                    7*******************************.*************99974 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.003         9      26      40 .]      18      32 ..       7      32 .. 0.72
   2 ?    6.5   0.1     0.003         9       4      17 ..      53      66 ..      51      75 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.003
  Zn-ribbon_8 26 ltaCPeCgsevrrvi 40
                 +++C +Cg ++ +vi
   KIR65341.1 18 QQVCRNCGNHAAQVI 32
                 455999999777765 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.003
  Zn-ribbon_8  4 YeYrCeeCghefev 17
                 Y  +C+ Cg ++++
   KIR65341.1 53 YAQQCTFCGAQYDI 66
                 5557******9995 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.3    0.0027         8       2       7 ..      21      26 ..      18      28 .. 0.77
   2 ?    6.9   0.1    0.0018       5.4      14      21 ..      55      62 ..      52      68 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0027
  zinc_ribbon_2  2 CpnCGa 7 
                   C nCG+
     KIR65341.1 21 CRNCGN 26
                   888886 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0018
  zinc_ribbon_2 14 kFCpyCGt 21
                   + C+ CG+
     KIR65341.1 55 QQCTFCGA 62
                   55666665 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.3     0.001         3      16      24 ..      18      26 ..      16      27 .. 0.87
   2 ?    4.1   0.1     0.011        33      19      24 ..      57      62 ..      54      67 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.001
  zf-ribbon_3 16 dnvCpyCGt 24
                 ++vC +CG 
   KIR65341.1 18 QQVCRNCGN 26
                 689****95 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.011
  zf-ribbon_3 19 CpyCGt 24
                 C+ CG+
   KIR65341.1 57 CTFCGA 62
                 777776 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.2    0.0011       3.2      19      46 .]      19      63 ..      12      63 .. 0.75
   2 ?    3.2   0.3     0.028        85      19      32 ..      55      66 ..      48      74 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
  Zn_Tnp_IS1595 19 fvCPhCgsrkayrikt...............rglf..qCkeCrkq 46
                   +vC +Cg+  a  i++               r ++  qC  C++q
     KIR65341.1 19 QVCRNCGNHAAQVISRrstkftlffiplipiRTRYaqQCTFCGAQ 63
                   89*******888888877888888888888844443378888776 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.028
  Zn_Tnp_IS1595 19 fvCPhCgsrkayri 32
                   + C +Cg    y i
     KIR65341.1 55 QQCTFCG--AQYDI 66
                   5688888..44444 PP

>> DUF35_N  Rubredoxin-like zinc ribbon domain (DUF35_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.4    0.0084        25      12      19 ..      19      26 ..      17      28 .. 0.78
   2 ?    6.8   0.8     0.002         6      11      20 ..      54      63 ..      53      64 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0084
     DUF35_N 12 qrCpdCGt 19
                q C++CG 
  KIR65341.1 19 QVCRNCGN 26
                77888885 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.002
     DUF35_N 11 gqrCpdCGtv 20
                +q+C+ CG+ 
  KIR65341.1 54 AQQCTFCGAQ 63
                8*******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 587.78
//
Query:       KIR65342.1  [L=76]
Description: hypothetical protein TK50_07850 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.085   13.0   6.8      0.099   12.8   6.8    1.1  1  RhlB      ATP-dependent RNA helicase RhlB


Domain annotation for each model (and alignments):
>> RhlB  ATP-dependent RNA helicase RhlB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   6.8   5.5e-06     0.099      90     143 ..      11      62 ..       8      73 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.5e-06
        RhlB  90 rkprverevdpaaavseapvvvaaavekpavvavegeraprkrrrrrngrplea 143
                 r+p ++++  p +a+    v  a+  e pa++a     +p +r rrr+ rpl +
  KIR65342.1  11 RRPLTDGH--PVTAPQPVTVPEATVPELPARTASRPPCTPGRRHRRRARRPLAG 62 
                 67777765..445555555447888899***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      142  (0.00792013); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 580.43
//
Query:       KIR65343.1  [L=462]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-39  135.7  73.1    6.8e-38  130.5  61.8    3.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        4.3    5.5  10.1       0.22    9.8   1.2    2.3  2  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5  61.8   7.5e-42   6.8e-38       2     349 ..      13     399 ..      12     403 .. 0.86
   2 !    4.7   4.0    0.0013        12     126     183 ..     404     460 ..     397     462 .] 0.65

  Alignments for each domain:
  == domain 1  score: 130.5 bits;  conditional E-value: 7.5e-42
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 ll+++   ++ + +++alp  +++dl +  + +++++ +y +++a ++l +G+l+d +Grrrv+ +gl+lfa+++l+++f+  + ll ++rvl+G+ga+
  KIR65343.1  13 LLSTISLPISLTGASVALP-DIGRDLDAGLAGVQWVVNGYNATFASFMLATGALADLLGRRRVYATGLALFAVAGLAGAFVDDIVLLDAARVLAGIGAA 110
                 788999999999*******.******************************************************99999977877************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivslla.fvlfllllpeepperkrkspkeee.......... 188
                 a+++++aal+a  f +  ++ra++l+++++++G ++gp ++gll++++gWravf++ a+vs+ + +++   llpe++ +++   +++            
  KIR65343.1 111 AAATSAAALLAGAFQGAGQARAFSLFGTAIGAGLAFGPSIAGLLIEAFGWRAVFVVPALVSCAVlGIV--PLLPESRQPHAGRVDWPGTvsftaallll 207
                 ************************************************************99984334..8889999999999999999********** PP

       MFS_1 189 ..................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls.glllaglllal 252
                                                   +++  ap+++ + +l +++++ ++l+a+ ++ +++  ll++lp+yl +v gls g   ag++l l
  KIR65343.1 208 ifgfvqgpefgwsapvivvafvaavallvlfvrvERRRAAPMFD-LALLANPRFVGVCLAAATIV-AVLVPLLVYLPSYLTTVVGLSpG--AAGGTLIL 302
                 *******************************8888888888888.55555555333333333333.35555****************74..33334444 PP

       MFS_1 253 lalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll.vlvliGfglgfvfpsllalasdlappeeagtasglfntagslgg 349
                 l + +++l ll+g+l  rl + ++ ++  +++++a +++a + +++s +++l+ +l+++G+g g+  ++l a+a  ++ p +a+t +g +nta+ ++ 
  KIR65343.1 303 LTAPTLVLPLLGGALT-RLVPAPAVIVCSVVVVAAGAAWATVIAPDSGTASLAgPLLTMGVGIGLSIGLLDAIAIGSVEPGRAATGAGMINTARLASE 399
                 4444444455666666.77887888888888888888888888888888888868888**********************************987665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0013
       MFS_1 126 lsagfslGa.ilgpllggllasslgWravfyilaivsllafvlfllllpeepperkrks 183
                 + +g+ l++   g l+ + ++   g r v +++a+++l a v +++ll++ + + +r +
  KIR65343.1 404 AVVGAVLAStTAGRLADPGFT--SGLRTVLWAMAGAALAATVAVAVLLWRGAARAERAR 460
                 333333333233344444444..359999999999999999999999999888877765 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   2.2     0.022   1.9e+02     328     378 ..     128     178 ..      95     182 .. 0.79
   2 ?    9.8   1.2   2.5e-05      0.22     288     362 ..     252     324 ..     225     345 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.022
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 328 saseAnlltGvvvipgaalGillgGllvkklklsakklaklvlvvsllsll 378
                  +++A  l+G+++  g a+G  ++Gll++ + ++a  ++   + +++l ++
  KIR65343.1 128 GQARAFSLFGTAIGAGLAFGPSIAGLLIEAFGWRAVFVVPALVSCAVLGIV 178
                 467788899*************************99999999998888765 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 2.5e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 288 krllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsa 362
                 + ll np f+ v+l++++ + ++ ++ ++lp yl t  +ls+  A   + +++ p  +l  llgG l++ l + +
  KIR65343.1 252 LALLANPRFVGVCLAAATIVAVLVPLLVYLPSYLTTVVGLSPGAAGGTLILLTAPTLVLP-LLGGALTR-LVPAP 324
                 689*************************************99999766555555555554.56777654.33444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       873  (0.0486921); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 3055.06
//
Query:       KIR65344.1  [L=378]
Description: hypothetical protein TK50_07860 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.7   0.3       0.26   11.5   0.3    1.7  1  MCD_N     Malonyl-CoA decarboxylase N-terminal domain


Domain annotation for each model (and alignments):
>> MCD_N  Malonyl-CoA decarboxylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   1.4e-05      0.26      49      80 ..     242     273 ..     221     277 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHHHHTTT-GCHHHHHHHHHHH CS
       MCD_N  49 GvkfLVdmRadllallkkekelraldadlehl 80 
                  v++LVd R++ll l+++ ++++ +d+ l++l
  KIR65344.1 242 PVASLVDVRKQLLVLRRQLDRMARVDDLLARL 273
                 5899**********************988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.18s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2946.20
//
Query:       KIR65345.1  [L=512]
Description: hypothetical protein TK50_07865 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3933.24
//
Query:       KIR65346.1  [L=509]
Description: gluconate transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.5e-130  435.9  48.5    1.7e-74  251.1  11.4    2.0  2  GntP_permease  GntP family permease
    3.7e-20   72.3  47.6    9.3e-20   71.0  47.6    1.6  1  CitMHS         Citrate transporter


Domain annotation for each model (and alignments):
>> GntP_permease  GntP family permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.8  29.1   3.8e-60   3.4e-56       3     205 ..      21     223 ..      19     233 .. 0.97
   2 !  251.1  11.4   1.9e-78   1.7e-74     217     439 ..     285     507 ..     275     508 .. 0.98

  Alignments for each domain:
  == domain 1  score: 190.8 bits;  conditional E-value: 3.8e-60
  GntP_permease   3 llivligvilllllviklklnafvaLllvsllvglvsGmpldkvvksiekGlGgtlGslaiiiglGamlGklledsGaaerialtlikklgkkkvq 98 
                    ++ +++g++++++l+   k+++f+aL+l + ++g+++G+ ++ +v+s++ G+G+t+G ++++i+lGam+G ll++sG+a+ i + ++ ++  + + 
     KIR65346.1  21 IVAAVLGIAAVVVLIAWGKVHPFLALILGAGVLGVAAGVGAEAIVTSFSGGVGSTVGGVGLLIALGAMIGGLLAESGGADGIVTRIVDRVSGRGLP 116
                    788999****************************************************************************************** PP

  GntP_permease  99 walvlagfivgialFfevglvlLiplvfaiakeakisllklgiplvaalavvhgllpPhPgplavaellgadiGkvllyGlivaiptviiagpllk 194
                    wa++ ++ ++g++lFfevg+vlL+p+v  +ak++++sl+k+gip +a+l+v hgl+pPhPgpl++++ l+ad+G +l  Gl++a+ptvi+agp+++
     KIR65346.1 117 WAMAGVAALIGLPLFFEVGVVLLVPIVLLVAKRTGVSLMKVGIPALAGLSVLHGLVPPHPGPLVAISSLNADLGLTLGLGLLIAVPTVIVAGPVFG 212
                    ************************************************************************************************ PP

  GntP_permease 195 kflkevvkeee 205
                    ++++++v+++ 
     KIR65346.1 213 NMISRYVPATI 223
                    ******99876 PP

  == domain 2  score: 251.1 bits;  conditional E-value: 1.9e-78
  GntP_permease 217 eekelPsfglslltillPvvlmlvktiaelllpkesaalevvefiGnpvvalliallvaiytlglrrgksikkvldileealksiaiilliigaGG 312
                      +  P f+ +++t+llPvvlml+++i el+l++++a + v++++G p+vall  ++va++tlg+++g+s k+v+++l+ +l +ia illi++aGG
     KIR65346.1 285 TARRAPKFWPAVITVLLPVVLMLLRAIGELTLAEDTAGRRVLDIVGTPIVALLAGVIVAMFTLGFQAGFSRKQVSSVLGGSLPPIAGILLIVAAGG 380
                    46779******************************************************************************************* PP

  GntP_permease 313 afkqvlvdsgvgkalaellsnlelspillaflvaallrialGsatVaaltaaglvapiiaqlpgvnlallvlaigaGslilshvnDagFWlvkeyl 408
                    +fkqvlvd+gvg+ +a++++ ++lsp+ll++lva+ +r+a+GsatVa++taag+vap+ +++    +all+laig Gsl++shvnDagFWlvkey+
     KIR65346.1 381 GFKQVLVDAGVGNLVADAAKDASLSPLLLGWLVAVGIRVATGSATVATITAAGIVAPLATTMDRPGVALLALAIGCGSLFFSHVNDAGFWLVKEYF 476
                    ************************************************************************************************ PP

  GntP_permease 409 gltvketlktwtvletilsvvgliivlllsl 439
                    gltv +t+k+w+vleti+svvg++ vlll+l
     KIR65346.1 477 GLTVGQTIKSWSVLETIISVVGFAGVLLLDL 507
                    ***************************9987 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0  47.6     1e-23   9.3e-20       1     300 []      32     455 ..      30     455 .. 0.81

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 1e-23
                 xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
      CitMHS   1 lvllileklrldvvallvlvll....vltieealsgiaspii.......llllgamiigaaleetGlfdrlaakllrlaggkrd.llvllvlltallsa 87 
                 +vl++++k++  ++ +l++ +l     ++ e +++ ++ ++        ll++++ +ig++l+e+G++d ++++++ ++ g  + l+++++ ++al++ 
  KIR65346.1  32 VVLIAWGKVHPFLALILGAGVLgvaaGVGAEAIVTSFSGGVGstvggvgLLIALGAMIGGLLAESGGADGIVTRIVDRVSG--RgLPWAMAGVAALIGL 128
                 5899999966666666666666666689999999999888888889999*******************************9..669***********77 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
      CitMHS  88 fvsndgvvlimipivlslakrlkklppllliplalaaniggaltpiGtpttraa............................................. 141
                  + + + v++++pivl +akr ++ ++   + ++++a +g ++++   p+++++                                             
  KIR65346.1 129 PLFFEVGVVLLVPIVLLVAKR-TGVSL---MKVGIPALAGLSVLHGLVPPHPGPlvaisslnadlgltlglglliavptvivagpvfgnmisryvpati 223
                 7777****************9.66664...55******************************8888888888888888888888888888888888888 PP

                 ..................................................................xxxxxxxxxxxxxxxxxxxx............. RF
      CitMHS 142 ..................................................................arpglslpnllllalllvgl............. 161
                                                                                    ++++ ++ +ll+++l+  l             
  KIR65346.1 224 peallptrtpaavggaergaaergaagrrqadvdgellteddlvnpgtgrpgapvddsgtetarraPKFWPAVITVLLPVVLML-Lraigeltlaedta 321
                 888888888888888888888888888888888888888888888888888888888888888444334444444444444333.35777777777777 PP

                 .........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxx RF
      CitMHS 162 .........lplvllfmfgvalalpvnapkvkkqkaiieaiarsllpvatilllaykkveWsvlllfaGvfllvgaleqtGilealadllga.g.gplv 249
                           p+v l++  ++ +++  ++ + + k++ + +  sl p+a+il            l++a+ +++ ++l + G+++++ad++++ +  pl 
  KIR65346.1 322 grrvldivgTPIVALLAGVIVAMFTLGFQAGFSRKQVSSVLGGSLPPIAGIL------------LIVAAGGGFKQVLVDAGVGNLVADAAKDaSlSPL- 407
                 777777776555555555666666777889999999999999*999999999............777888888*****************65545453. PP

                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 250 alalvlglial.lsafisnvavaalmapialgmapalgllspsplalalavg 300
                    l+ +l+a+ +++++++++va+++a+++++ +++++   p   +lala+g
  KIR65346.1 408 ---LLGWLVAVgIRVATGSATVATITAAGIVAPLATTM-DRPGVALLALAIG 455
                 ...459**************************655545.7888899999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3591.93
//
Query:       KIR65347.1  [L=517]
Description: carbohydrate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.3e-65  219.4   0.0    6.7e-65  219.1   0.0    1.1  1  FGGY_N       FGGY family of carbohydrate kinases, N-terminal 
    1.3e-35  122.9   0.2      2e-35  122.4   0.2    1.3  1  FGGY_C       FGGY family of carbohydrate kinases, C-terminal 
     0.0026   17.3   0.0        0.2   11.1   0.0    2.2  2  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.1   0.0   1.1e-68   6.7e-65       1     245 []      10     251 ..      10     251 .. 0.99

  Alignments for each domain:
  == domain 1  score: 219.1 bits;  conditional E-value: 1.1e-68
                 EEEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEESSEEE-TT CS
      FGGY_N   1 lilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpLynailwk 99 
                 +++g+D+Gttstk +++d +g+ +as+++ ++l+ p++g+aeqdp  i++a+ e++r+v++++   +  ++++++s+++++l+ lD +++pL++ ++w+
  KIR65347.1  10 VVIGVDIGTTSTKSVAYDTDGRQLASHSVGYPLDEPQPGYAEQDPLLIFDAVVETVRAVVTEL---PGPVAGLSFSTAMHSLIGLDPDGQPLTPSVTWA 105
                 589************************************************************...9******************************** PP

                 --TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--EEEHHHHCTTTSEETTTTEE-HHHHHHTT- CS
      FGGY_N 100 drrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfvtdvtnasesmlfnikklewdeellailgi 198
                 d r++ ++e+l++  +  +l  +tg++++++ +l kl W++e+ep+ fe+++ ++ i+dy+  rL ++ vtd++ as+s+l++i++++wd e+l i+gi
  KIR65347.1 106 DSRASRQAERLRAARSGLALHRRTGTPVHPMAPLPKLVWFAEQEPKLFEQVAHWVGIKDYVLLRLCEALVTDHSVASASGLMDIQTRAWDAEALRIAGI 204
                 *************************************************************************************************** PP

                 -GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 199 peelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                 +ee+LP+lv ++ +   l++e aa++Gl + +p+v g+gD  +a+lG
  KIR65347.1 205 TEEQLPQLVATTTVLPGLTAEYAAATGLPADTPIVVGAGDGPLANLG 251
                 ********************************************998 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   0.2   3.3e-39     2e-35       2     197 ..     261     448 ..     260     449 .. 0.92

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 3.3e-39
      FGGY_C   2 kvslGTssflllvgtkpvisehglltpvagedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpafsglra 100
                 ++s+GTs  + ++ ++p  +  g    +a   +++ +++ g+i+  g +++w  d   l+ e+ +++e+ e+la+  aa+a + +gg++++p++  +ra
  KIR65347.1 261 ACSIGTSGAMRVMVERPAVDPLGGVFCYA--LTEDRWVVGGAINNGGIVLQWAGDA--LAPELGEDSEE-ELLAL--AARAPVGSGGLIMLPYLLSERA 352
                 79**********88999844444444444..669**********************..77788999997.99994..7799999*************** PP

      FGGY_C 101 pywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilAava 197
                 p+w +  rg+++gl++++  +h++rAale+v+ ql+ +l +  +  g ++++++++GG ++++l++qllAd+lg+pV+ p+ +e+  +GaA+l++ a
  KIR65347.1 353 PHWSALPRGAYVGLTHGHRREHLVRAALEGVCQQLALVLASVRSA-GNEVREVRASGGFARSPLWRQLLADALGLPVRFPAGHEGSSFGAALLGMQA 448
                 ******************************************888.***********************************************9966 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   3.4e-05       0.2       1      23 [.      12      34 ..      12     124 .. 0.84
   2 !    4.2   0.0    0.0044        26     192     233 ..     377     416 ..     366     444 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.4e-05
                 EEEEE-SSEEEEEEEETTTEEEE CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekgevlg 23
                 +G+D+G+T+tk v +d +g  l+
   KIR65347.1 12 IGVDIGTTSTKSVAYDTDGRQLA 34
                 7***************9998554 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0044
                  HHHHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHH CS
  BcrAD_BadFG 192 edIlaglhraialrvialisrsggvtdevtltGGvakneaav 233
                  ++ l+g+++++al +++++s  ++v++ v   GG+a++ ++ 
   KIR65347.1 377 RAALEGVCQQLALVLASVRSAGNEVRE-VRASGGFARS-PLW 416
                  56799********************86.********98.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 4075.65
//
Query:       KIR65348.1  [L=398]
Description: hypothetical protein TK50_07885 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2766.19
//
Query:       KIR65349.1  [L=124]
Description: hypothetical protein TK50_07890 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-19   69.6   0.3    2.5e-19   68.9   0.3    1.3  1  YidD             Putative membrane protein insertion efficien
  ------ inclusion threshold ------
       0.13   12.1   2.1       0.22   11.4   2.1    1.3  1  CxC4             CxC4 like cysteine cluster associated with K


Domain annotation for each model (and alignments):
>> YidD  Putative membrane protein insertion efficiency factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.3   2.8e-23   2.5e-19       6      66 .]      61     123 ..      57     123 .. 0.91

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 2.8e-23
        YidD   6 alirlYqkvisp.llksCrfyptCSeYaleaiekyGllkGlllalkRilrCnplskgG.yDpv 66 
                 a+i  Y++++s  +  +Cr++ptCS+Y+l a+e++Gl  G+ +a++R+ rC+p  + G +Dpv
  KIR65349.1  61 AAILGYRRWLSHrWPGQCRYTPTCSAYGLAAVERHGLAVGGRMAAERLRRCKPHVPRGtHDPV 123
                 68999******96447*************************************9888769997 PP

>> CxC4  CxC4 like cysteine cluster associated with KDZ transposases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.1   2.4e-05      0.22      49      74 ..      17      38 ..       7      41 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.4e-05
        CxC4 49 lqrCpaCahtrrfiGpDlrelGlfny 74
                +  C+ C     ++GpD++++Glf +
  KIR65349.1 17 VDSCTDCD----CDGPDCCDFGLFSF 38
                779****4....9***********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 881.24
//
Query:       KIR65350.1  [L=314]
Description: hypothetical protein TK50_07895 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0008   20.3   1.4     0.0014   19.5   0.5    1.9  2  Trypsin_2  Trypsin-like peptidase domain
     0.0054   16.6   0.7      0.011   15.6   0.1    1.7  2  Trypsin    Trypsin


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       0.4   3.6e+03      58     107 ..      47      73 ..      10     101 .. 0.54
   2 !   19.5   0.5   1.6e-07    0.0014       5     142 ..      95     268 ..      91     281 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.4
   Trypsin_2  58 AllkvssderaglpplplgpsealkggepvyvvGyplggeksgsvssGiv 107
                 A l+                     ++ +v +v+ p+g +   ++ ++ v
  KIR65350.1  47 AALRT--------------------PSAEVPAVSRPDGAP---WTRANAV 73 
                 33333....................333444444444443...3333333 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.6e-07
   Trypsin_2   5 lvgsdg..lilTnaHvvdsadgaavkaikkkveeagadgrevpak........vvaadp................elDlAllkv.ssderaglpplplg 76 
                 +++s +  +++T+aH+v++ d    +++ +++    + +r  +a                               ++D A++ + ++++++ ++ +  +
  KIR65350.1  95 VLDSANrsTVVTAAHCVNNTDLIGEDNQWSSNVLFVPGYRDGRAPygmfvgrlS----VapstwlrndqieslydSYDQAFVVLhPNSDGRRVQDAVGA 189
                 555554447********8888777733333444444444444444445444342....1333355555587777566*******955555555555533 PP

   Trypsin_2  77 pse...alkggepvyvvGyplggeksg.....svssGivsgvve...........sesaasgegesfl.qtdaatspGsSGGplfd 142
                  ++   +++g + v  +Gyp+ + +++              + e            +  ++++++  +  t + + +GsSGGp f 
  KIR65350.1 190 AQRigyDVPGARVVHQFGYPRASSDKAreglpE-------YTGErlayctgpaveQQATEDWPEPPGQwGTECVMGGGSSGGPRFA 268
                 33335588888899999***8888755555552.......33333333333554445577777777779**************985 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.2e-06     0.011      23      56 ..      85     119 ..      62     133 .. 0.72
   2 ?   -1.7   0.1      0.23   2.1e+03     179     191 ..     260     278 ..     202     292 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-06
                 C..EEEEEEEEEETT...EEEEEGGGTTTGGGEEEEESE CS
     Trypsin  23 g..khlCgGslisen...wvlTAaHCvsnasdvkvvlge 56 
                       C+++++++    +v+TAaHCv+n    +  +ge
  KIR65350.1  85 HgeDSSCTATVLDSAnrsTVVTAAHCVNN----TDLIGE 119
                 234668999999764456**********9....233444 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.23
                 TTTTSEEEETTT......E CS
     Trypsin 179 GDSGGPlvcsdg......e 191
                 G SGGP +++         
  KIR65350.1 260 GSSGGPRFADFDrhtglgV 278
                 7788888877665633333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2446.16
//
Query:       KIR65351.1  [L=669]
Description: abortive phage resistance protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-78  263.9   0.0    2.8e-78  263.5   0.0    1.1  1  AIPR          AIPR protein
  ------ inclusion threshold ------
      0.052   13.7   0.0       0.13   12.4   0.0    1.7  1  Terminase_6C  Terminase RNaseH-like domain


Domain annotation for each model (and alignments):
>> AIPR  AIPR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.5   0.0   3.2e-82   2.8e-78       1     294 [.     231     544 ..     231     545 .. 0.94

  Alignments for each domain:
  == domain 1  score: 263.5 bits;  conditional E-value: 3.2e-82
        AIPR   1 lekNvReflgttgkvNkgIreTlreepekFflyNNGItitaekiklekkesgseviielenlqIVNGgQTtasIykalkkk.ldlskvyVqvklikv.a 97 
                 le NvR+fl+t+g vNkgIr+Tl+++p++F++yNNGIt+ta+ +++++ ++g+++i  +++lqIVNGgQTtasI+ a +++ +dls+v+Vq+kl+ v  
  KIR65351.1 231 LELNVRSFLQTKGGVNKGIRDTLLHNPDRFLAYNNGITATASTVEFTELPEGGQAISMIHDLQIVNGGQTTASIHYAHTRDkADLSRVHVQMKLTRVsP 329
                 799*******************************************98888899***********************9999999*************97 PP

        AIPR  98 edeedlikeIsraaNsQnkVsdkdlasndefhkrlekllr..........eeqtkvfYerargefdnek..........afk...pkskkitktdlakv 173
                 +  +++++eIs+++N+QnkV+  d++sn++fh+++e+  r           ++tk+fYerarg++ +            +f+   p+ +k+tk d+ak+
  KIR65351.1 330 DRLQEIVPEISKYSNTQNKVTVVDFSSNHPFHVAIEQVTRslwapasdgsGQETKWFYERARGQYTDALarertpanqrKFRslhPTGQKFTKADAAKF 428
                 78899*********************************************99***********************9988777999************** PP

        AIPR 174 lnalflqkPhqaskgkak.lekkyekeeekgskyekifkekltykkliasvilfkklekkikkelkegykanivyyilaalrkllkkkldllkiweeqk 271
                 ++ ++   P+ +s+g++k   + +  + e+   ++  f      ++l+a++ilfk ++k++  +   gyk ni+ y++a l+++++ ++dl+++w+eq+
  KIR65351.1 429 IH-SWGGLPYLVSRGAEKnFRELMVRMGESVPTVNVSF-----AQRLLAKAILFKATDKIVAARDFGGYKINITSYTIARLAEATNRRVDLDRLWREQG 521
                 **.***************64444444555666777777.....9********************999******************************** PP

        AIPR 272 isqelekllekiaeevedsieee 294
                 +s +l  +l+ +   v+++i ++
  KIR65351.1 522 LSPALAAALDDLCVSVREVIVNP 544
                 *********99999999988775 PP

>> Terminase_6C  Terminase RNaseH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.4e-05      0.13      11      67 ..     593     652 ..     586     669 .] 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.4e-05
                   TBEEEEEEE...ETTTTCEEEEEEEEESSS-CCCHHHHHHHHHHCTTCEEEEECCSCHHH CS
  Terminase_6C  11 gDyaalvvi...dvkddkfellavlherglspalqaaaikklaerynviyvyieitsaGe 67 
                    D++++vv+    v +  +++la++ + +++ + + ++++++++ry+ + ++i +++a +
    KIR65351.1 593 DDTTGGVVAqvmAVSAPEWFALARWAKETRNLHPWQRQLAETVGRYINNSWPIVDKQASQ 652
                   6888888888889****************************************9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 4629.28
//
Query:       KIR65352.1  [L=335]
Description: hypothetical protein TK50_07910 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-77  259.4   0.0      5e-77  259.2   0.0    1.0  1  DUF4420   Putative  PD-(D/E)XK family member, (DUF4420)


Domain annotation for each model (and alignments):
>> DUF4420  Putative  PD-(D/E)XK family member, (DUF4420)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.2   0.0   2.8e-81     5e-77       2     303 ..       5     313 ..       4     314 .. 0.96

  Alignments for each domain:
  == domain 1  score: 259.2 bits;  conditional E-value: 2.8e-81
     DUF4420   2 eeiweelsaeerekeglssrrlssesplsiflaideegkkrlllssvkkasksrsak.....lslkqvklsesstens.kslelslkdselreiFatlc 94 
                 ee w+ l+ae+    g+ +rrl+++s+++ifla+++++ +r+ll++v +++    a+      s++++ +   + +++ ++l+++l+++e+re+F++l+
  KIR65352.1   5 EEDWAPLEAEHHP-YGIIARRLFPRSRHDIFLAVQQPTGRRVLLVRVPASAGQPVARrypslPSTRGLAIEFATAPDGsTELQVILTADEQREVFNPLI 102
                 689*****99988.99********************************9999999999****899988887776665515566**************** PP

     DUF4420  95 edlvesledeedekellsavverlkrWqellrklkskglseeeqqGLiGELlvLkdllsqrlgee.aiesWtGpdgekqDFelenlaiEVKstlskskq 192
                 +d+++++ ++e  +e+l+a++er++ W+ ll+  +++glsee++qG++GEL+vL+d+l + l    a+++W+Gp g++qDFel ++aiEVK+ + +s++
  KIR65352.1 103 ADVATTAYTAEGPAEALTAAIERFEHWRRLLQSIRDTGLSEEARQGVFGELVVLRDHLCPVLPFGeAVSAWRGPMGANQDFELTTCAIEVKTGTGRSPR 201
                 *************************************************************************************************** PP

     DUF4420 193 rvtisseeQLddtkdsqlyLvvlrl..eesrtGeslkelvneirelleadpaaldkfeekLakagyldeheekykerrykvrkarfyeVdddFPrites 289
                 ++ i+se+QLd+t+   l+L++l+l  ++ ++Gesl+ +v+++re    + aa++k++++L++agyl+eh+  y+e ry+vr+++f++V+++FPrite+
  KIR65352.1 202 SIAIASERQLDETGTDLLLLAHLSLdeRRGGSGESLNAVVDSLRETS-PSMAARAKIDDLLIRAGYLSEHRHLYDEVRYTVRSTEFWHVTEEFPRITEA 299
                 *************************9999999**************9.*************************************************** PP

     DUF4420 290 dlpegitdvrYtid 303
                 dl+ g++ +rY i+
  KIR65352.1 300 DLRPGVGGCRYRIS 313
                 ************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2301.34
//
Query:       KIR65353.1  [L=933]
Description: endonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-80  270.1   0.1    4.9e-80  268.3   0.0    1.8  2  Z1        Z1 domain


Domain annotation for each model (and alignments):
>> Z1  Z1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1     0.093   1.7e+03      35      90 ..      27      82 ..      21     107 .. 0.66
   2 !  268.3   0.0   2.7e-84   4.9e-80       1     229 [.     428     660 ..     428     662 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.093
          Z1 35 fkdeqekvaelieelleelkkelkesaeekkeellkeleklwekektstkseeeel 90
                +++ +e++ae ++ +++  +++ ++ ++    + ++    +w++++   k++++++
  KIR65353.1 27 RQARHEEIAECVDPIWRMQRSRGQQLDRDVLLKEIESRVAVWQDDSLGLKDDRNHV 82
                57889999999999999655554444555555555666678888832233333333 PP

  == domain 2  score: 268.3 bits;  conditional E-value: 2.7e-84
          Z1   1 slkeAikaFllavairrlrgqekkhnsmLvhvsrfkdeqekvaelieelleelkkelkesaeekkeellkeleklweke..kts....tkseeeelsfe 93 
                 sl++Ai++F+l++a+rr+rgq ++hnsmL+hv+r++++q++++++i+e+++ ++++l++  + + +++l+ l++lwek+  + +       + ++++++
  KIR65353.1 428 SLRRAIDTFILTCAARRVRGQGTQHNSMLIHVTRYVSVQNRIRDQIDEYVSLTRDRLRDGMGGEAAHTLDLLRSLWEKDfsS-TsamfPAGAASPVQWS 525
                 799****************************************************************************642.258886678999**** PP

          Z1  94 evkeelkealekievvvvNsskkkerldYeeeeeeglsvIavGGnkLsRGlTleGLtvsyflRktktyDtlmQmgRwFGYRkgYedlvrlytteellea 192
                 ev++el+ al+kiev+ vN+s++ ++l+Y e+++ glsvIavG +kLsRGlTleGL+vsy+lR++++yDtl+QmgRwFGYR+gYedl+rlytt++l ++
  KIR65353.1 526 EVEKELRPALRKIEVRAVNGSSR-DALEYYEKRKAGLSVIAVGAEKLSRGLTLEGLSVSYYLRASNMYDTLLQMGRWFGYRPGYEDLCRLYTTSDLFNS 623
                 **********************9.*************************************************************************** PP

          Z1 193 Feaiaeaeeelreelkemaeekltpkefglkvrshps 229
                 + +i++a++elr+++ ema+ ++tp++fgl+vr++p+
  KIR65353.1 624 YGEITAADNELRQDFAEMARLGQTPESFGLRVRASPA 660
                 *********************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 6232.06
//
Query:       KIR65354.1  [L=492]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-25   89.5   0.0    3.3e-25   88.5   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
     0.0068   16.9   0.0      0.014   15.9   0.0    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.0   3.6e-29   3.3e-25       1     124 [.      22     146 ..      22     159 .. 0.91

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 3.6e-29
  HATPase_c_3   1 yslekAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGlklAslslgkkltvitkke.ge 97 
                  ys+e A+a+lvdNs++A a+++++++    g ++ + + DdGkGm+ e l +a+++a     ++r s++lG++G+Glk+As+s++++ltv t++e g 
   KIR65354.1  22 YSVEAAVADLVDNSVSAGARRIDVYFTWA-GPASWVAVVDDGKGMTTEGLVSAMTIAARGSFKPRASDDLGRFGMGLKSASFSQAARLTVATSSEaGA 118
                  7899***********************97.7899**********************************************************877688 PP

  HATPase_c_3  98 ss.tltldvdkidkenekvleeltveei 124
                   + + t+d++++++ +e+ l   t +e 
   KIR65354.1 119 PEaVRTWDLSVVSATGEWRLLHGTDDET 146
                  77789************99976666654 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.5e-06     0.014       9      81 ..      27     100 ..      23     166 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCS..TTCH..HCSTCHTSTSSSHHHHHH CS
   HATPase_c   9 iisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfe..kfsq..ddstkrggggtGlGlsiv 81 
                 ++  lvdN+v +   a +i+v  +      ++ v D+G+G++ e l   ++  +     +  ++++ g++G+Gl+ +
  KIR65354.1  27 AVADLVDNSVSA--GARRIDVYFTWAGPASWVAVVDDGKGMTTEGLVSAMTiaAR-GsfKPRASDDLGRFGMGLKSA 100
                 6789*******7..67778887776345899****************66664222.246667777788888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3603.53
//
Query:       KIR65355.1  [L=434]
Description: ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-24   85.7   0.0      4e-24   85.0   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
      2e-05   25.1   0.0    3.8e-05   24.2   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.0   4.4e-28     4e-24       3     119 ..      27     142 ..      25     161 .. 0.87

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 4.4e-28
  HATPase_c_3   3 lekAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGlklAslslgkkltvitkkegess. 99 
                  + +A+a++vdNs+ A+a +v++ +++  g+ +++ i D+G Gms++ l ++lrl+t +++   ks  lG++G+Glk+Asls+++++ v+++++ +   
   KIR65355.1  27 FPTAVADIVDNSIAASASRVEVMIEFA-GSRTRVYIADNGRGMSPKALLEGLRLGTRRTY---KSGELGRYGLGLKTASLSQCRSVAVVSRSSPDVVr 120
                  568***********************7.799*****************************...89**************************9966554 PP

  HATPase_c_3 100 ..tltldvdkidkenekvleel 119
                    +  ld+d +++ +++v+ + 
   KIR65355.1 121 tsARVLDLDIVEEWDQWVVVDP 142
                  4478888888888888877655 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   4.2e-09   3.8e-05       9      81 ..      30     100 ..      26     132 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 4.2e-09
                 HHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT...GTCS.TTCHHCSTCHTSTSSSHHHHHH CS
   HATPase_c   9 iisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlk...klfe.kfsqddstkrggggtGlGlsiv 81 
                 ++  +vdN++ +  +a+++ev i+    + ++ + DnG+G++++ l    +l++ + ++    + + g+ GlGl+ +
  KIR65355.1  30 AVADIVDNSIAA--SASRVEVMIEFAGSRTRVYIADNGRGMSPKALLeglRLGTrRTYK----SGELGRYGLGLKTA 100
                 6789*******7..788888888865679**************9988566666633333....44459999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2971.57
//
Query:       KIR65356.1  [L=482]
Description: hypothetical protein TK50_07940 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.011   15.7   0.0       0.03   14.4   0.0    1.7  1  HTH_3          Helix-turn-helix
       0.52   10.5   2.8        1.1    9.5   2.8    1.6  1  Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.3e-06      0.03      19      55 .]      85     121 ..      85     121 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.3e-06
                 HTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3  19 lGvsrstisriEnGernPsletlkklakaLgvsldel 55 
                 +G++++++sr EnG     l++l   a ++g++ ++l
  KIR65356.1  85 MGITQAQLSRVENGPPLVHLDRLAHWAGVFGIPAAYL 121
                 69*******************************9987 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.8   0.00012       1.1      13      39 ..       1      25 [.       1      26 [. 0.87

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00012
  Auto_anti-p27 13 MLaetCpvCgvPLmrdrkggkvyCvaC 39
                   M+ ++Cp+Cg  L rd ++g+  C  C
     KIR65356.1  1 MTPANCPRCGGRLARDNDSGR--CTPC 25
                   8999************98777..8777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3488.98
//
Query:       KIR65357.1  [L=76]
Description: hypothetical protein TK50_07945 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 590.70
//
Query:       KIR65358.1  [L=92]
Description: hypothetical protein TK50_07950 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 734.71
//
Query:       KIR65359.1  [L=282]
Description: sugar phosphate isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-24   86.9   0.7    1.6e-24   86.5   0.7    1.1  1  AP_endonuc_2     Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
      0.084   12.6   0.0       0.25   11.1   0.0    1.9  1  AP_endonuc_2_N   AP endonuclease family 2 C terminus
       0.38   10.6   4.6        3.5    7.5   0.2    2.6  4  RNaseH_pPIWI_RE  RNaseH domain of pPIWI_RE


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.7   2.7e-28   1.6e-24       4     200 ..      26     217 ..      23     227 .. 0.84

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 2.7e-28
                   HHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCTTTS CS
  AP_endonuc_2   4 aaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllvlhpGtagagpkg 100
                   +++ Gfd++El    + +++   ++ +++l + l+ +   +a+l +  +  ++de+ + +       +++++++ a ++Ga ++  +   a+ag ++
    KIR65359.1  26 IRAWGFDAIELTVQAPGDWD---PASAADLLAGLELAPAVCAGLLPEHDLLADDEEVLRRT----EGFVRHCVRVAGRVGAAVVAGPLY-APAGRRW 114
                   7899***************9...57888888888888888888888888888777644444....79****************999966.3333333 PP

                   GHH.....HHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC..HHHHHHHHHHTTTTEEEEEEHHHHHHHTTTHHHHHHHHHGGEEEEEE.E CS
  AP_endonuc_2 101 see.....eawerlaeslneladyaekegvklalEtlagsgvelgd..eelarlldavdspnvgvclDtgHlliaeedvddalraladrikhvHikD 190
                     +     +a +rl+++l+ la++a+ +gv++alE+l++++++l++  e++++++d v+   +g++lDt+Hl+i+e d+ +a+r  +d+++hv+++ 
    KIR65359.1 115 LLDadarrAATARLVARLRPLAEEAAGQGVTIALEPLNRFETSLLNtvEQALEVVDGVPG--LGLALDTFHLNIEERDLPAAIRLAGDHLAHVQVCG 209
                   33355557***********************************999*************7..*********************************77 PP

                   ESSTTTTSST CS
  AP_endonuc_2 191 akgdlgagrd 200
                   +++  g  ++
    KIR65359.1 210 NDR--GVPGG 217
                   776..33333 PP

>> AP_endonuc_2_N  AP endonuclease family 2 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.2e-05      0.25       1      21 [.     221     241 ..     221     242 .. 0.96

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.2e-05
  AP_endonuc_2_N   1 dwkdifsaLrqiGYdgplSiE 21 
                     dw+ +f aL+ iGY g + +E
      KIR65359.1 221 DWSGMFDALTGIGYSGQVNVE 241
                     8*****************999 PP

>> RNaseH_pPIWI_RE  RNaseH domain of pPIWI_RE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2   0.00058       3.5     224     264 ..      18      56 ..       6      62 .. 0.85
   2 ?   -4.0   0.0       1.8   1.1e+04      73      89 ..      76      92 ..      70     101 .. 0.77
   3 ?   -3.1   0.2      0.97   5.8e+03     252     265 ..     120     133 ..     109     136 .. 0.79
   4 ?    4.4   0.0    0.0051        30      20      65 ..     188     238 ..     184     261 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00058
  RNaseH_pPIWI_RE 224 gesekdpgkkawntptllEivvlgcqeedepealAalvhqL 264
                         +++p  +aw    ++E++v ++++ ++p++ A l + L
       KIR65359.1  18 ALARLAPRIRAWG-FDAIELTVQAPGD-WDPASAADLLAGL 56 
                      556999*******.***********99.*******999877 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.8
  RNaseH_pPIWI_RE 73 eeeqrreferfvqevls 89
                     +ee  r++e fv+++++
       KIR65359.1 76 DEEVLRRTEGFVRHCVR 92
                     56777889999998875 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.97
  RNaseH_pPIWI_RE 252 depealAalvhqLR 265
                       +++a A lv++LR
       KIR65359.1 120 ARRAATARLVARLR 133
                      67788899999998 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.0051
  RNaseH_pPIWI_RE  20 akflpvavrirpdeegaarvlgwddekg.....eWvpypeallrlaasaiv 65 
                      ++ lp a+r+  d+  +++v+g d   +     +W+ + +al+ ++ s +v
       KIR65359.1 188 ERDLPAAIRLAGDHLAHVQVCGNDRGVPggdhlDWSGMFDALTGIGYSGQV 238
                      56799*****************888877**************988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2096.50
//
Query:       KIR65360.1  [L=438]
Description: helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-08   35.0   1.5    2.1e-08   34.2   0.1    2.1  2  AAA_30           AAA domain
      3e-07   30.5   0.0     0.0004   20.3   0.0    2.2  2  AAA_11           AAA domain
    6.6e-06   25.9   0.0    9.7e-06   25.3   0.0    1.2  1  AAA_12           AAA domain
    4.4e-05   23.3   0.1       0.53   10.0   0.0    3.2  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    0.00011   22.5   0.0     0.0003   21.2   0.0    1.6  1  AAA_19           AAA domain
    0.00055   19.8   0.0     0.0013   18.6   0.0    1.6  1  Helicase_RecD    Helicase
     0.0053   17.1   0.0      0.011   16.1   0.0    1.6  1  AAA_16           AAA ATPase domain
     0.0097   14.9   0.8      0.014   14.4   0.1    1.5  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
  ------ inclusion threshold ------
      0.036   13.7   0.0        2.6    7.6   0.0    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
       0.27   11.2   0.0       0.43   10.6   0.0    1.2  1  ResIII           Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1   1.1e-11   2.1e-08       9     133 ..      19     175 ..      17     185 .. 0.78
   2 ?   -3.0   0.1       2.8     5e+03      21      30 ..     331     340 ..     299     358 .. 0.66

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 1.1e-11
      AAA_30   9 avealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelg..ieastiakllkrlk........................ 81 
                 +++ l t+++r +v+  p+G+GK+t++  ++  ++aag+++i++A t+++ ++L + l   +++ +i +l  +                          
  KIR65360.1  19 VLADLRTGDHRGVVVDSPPGAGKSTLVVRAAVELAAAGEPLIIVAQTNEQVDDLIDRLArkAPGLRIGRLSATEYrptdrvkdhptvkvaakvadlgep 117
                 567788999999*************999988888899*****************976553234445555543322555666677777778888888899 PP

      AAA_30  82 ........grarlepg..tllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVea 133
                         ++a +++g     ivDEa  + ++ l +++ + e+     ++vGD+ Ql++ ++
  KIR65360.1 118 avvigtaaKWAMVTEGcwPWAIVDEAYQMRSDALLRVAGRFER----ALFVGDPGQLDPFST 175
                 999999984355555556899********99999999988877....9*********98665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.8
      AAA_30  21 avltGpAGtG 30 
                  +  G+AG+G
  KIR65360.1 331 RAHLGAAGAG 340
                 2233444444 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.2e-07    0.0004      20     100 ..      31      95 ..      16     113 .. 0.80
   2 !    8.1   0.0    0.0011         2     220     257 ..     137     173 ..     118     176 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.2e-07
      AAA_11  20 tliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneeeri 100
                 +++  PPG gK++ +v    +l         ++a++ + + a++N  vD+l++rl+r       +  +++i R+ + e r+
  KIR65360.1  31 VVVDSPPGAGKSTLVVRAAVEL---------AAAGEPLIIVAQTNEQVDDLIDRLAR-------KAPGLRIGRLSATEYRP 95 
                 67899*****************.........799999********************.......55555655555555444 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0011
      AAA_11 220 vviIDEAaqavEpstliPlrlgakkvvLvGDpkQLpat 257
                 + i+DEA q     +l     + ++++ vGDp QL + 
  KIR65360.1 137 WAIVDEAYQMR-SDALLRVAGRFERALFVGDPGQLDPF 173
                 889***99965.566666777779***********995 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   5.4e-09   9.7e-06     109     197 ..     308     395 ..     271     397 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 5.4e-09
      AAA_12 109 e....erkkigvitpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsnekkeigflkderrlNValTRAkskliivGn 197
                 +    + ++i+v + +r+qv  ++ +l ++        i+v+t ++ QGre dv i+    s ++   +f  ++ rl+V  +R ++++++v  
  KIR65360.1 308 AgapvTADRIAVGAAHRDQVAAIRAHLGAAGAG-----ITVDTANRLQGREYDVTIVLHPLSGRRDATAFHLESGRLCVLTSRHRHACVVVAR 395
                 045556799*******************65554.....9***************************************************975 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00029      0.53       2      35 ..      32      72 ..      31     100 .. 0.68
   2 ?    3.4   0.0     0.031        55      64     109 ..     136     179 ..      96     185 .. 0.77
   3 !    6.2   0.1    0.0042       7.5     173     233 ..     327     393 ..     270     394 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00029
  Viral_helicase1  2 vvhGvpGcGKStlirkllrts.......liltvnrptaell 35
                     vv+  pG+GKStl+++++ +         i+ + ++++ +l
       KIR65360.1 32 VVDSPPGAGKSTLVVRAAVELaaageplIIVAQTNEQVDDL 72
                     89*************99988455554443334444444444 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.031
  Viral_helicase1  64 kililDEylllhaGyilllaalskaklvilfGDplQipfhsrnasf 109
                         i+DE++++ +  +l +a   + + ++ +GDp Q    s+++++
       KIR65360.1 136 PWAIVDEAYQMRSDALLRVA--GRFERALFVGDPGQLDPFSTVETV 179
                      5689******9964444444..455679999*****9999888765 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0042
  Viral_helicase1 173 tqalkealgvr....evttvhevqGltfdkVtlv..llketdlelisesrenllvAlTRhrkslvil 233
                      ++a  ++lg+      v t    qG ++d+++++  l+ + d  ++  ++  l v  +Rhr ++v++
       KIR65360.1 327 VAAIRAHLGAAgagiTVDTANRLQGREYDVTIVLhpLSGRRDATAFHLESGRLCVLTSRHRHACVVV 393
                      4444444444477777999*********96666522223333334445688899*******999875 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.7e-07    0.0003      11     141 ..      29     170 ..      21     174 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.7e-07
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal..................ldfddlltealell 91 
                 + ++v  +pG GK+++++ +  +l ++g    e++++va t+  ++ l +rl a +a+   i rl+                    ++ dl  e++ ++
  KIR65360.1  29 RGVVVDSPPGAGKSTLVVRAAVELAAAG----EPLIIVAQTNEQVDDLIDRL-ARKAPGLRIGRLSAteyrptdrvkdhptvkvaAKVADLG-EPAVVI 121
                 5688999********9999999999999....89******************.778887777777666666666655555544444444444.333333 PP

      AAA_19  92 eeaeeekkl.qeee.llivDEfqdvdelqyrLlkallgekkklllvGDpdQl 141
                   a++   + + ++ + ivDE+ ++     +Ll+    + ++ l+vGDp Ql
  KIR65360.1 122 GTAAKWAMVtEGCWpWAIVDEAYQMR--SDALLRVAG-RFERALFVGDPGQL 170
                 444444444145689******75554..344555444.556789******98 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   7.2e-07    0.0013       1     120 [.      32     164 ..      32     178 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 7.2e-07
  Helicase_RecD   1 vltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglke........eekkkkaekaelrvrkqrieyiapdellklk 88 
                    v+ + +G GKS+++  a+ +l+a+g+  ++++a ++e+v+ l+++la++   l++ +        +  ++ +++ +++v  +  +  +p  ++ + 
     KIR65360.1  32 VVDSPPGAGKSTLVVRAAVELAAAGE-PLIIVAQTNEQVDDLIDRLARKAPGLRIGRlsateyrpT--DRVKDHPTVKVAAKVADLGEPAVVIGTA 124
                    567899******************98.89999**************99998888877777777442..3333333344443333333443333333 PP

  Helicase_RecD  89 eqa........dllvvDEAAaiplpllkkllekfkrvvla 120
                    +++         + +vDEA ++  + l ++  +f+r ++ 
     KIR65360.1 125 AKWamvtegcwPWAIVDEAYQMRSDALLRVAGRFERALFV 164
                    3223344444499**********99999999999998884 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   6.2e-06     0.011      12      63 ..      16      69 ..      10     166 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.2e-06
      AAA_16 12 LlsalervrsgrpelvllsGesGvGKsslv.rellralekdg.gif.lrgkcdql 63
                ++++l ++r+g+ + v++  ++G GKs+lv r ++ +l ++g  +  ++++++q 
  KIR65360.1 16 VNAVLADLRTGDHRGVVVDSPPGAGKSTLVvR-AAVELAAAGePLIiVAQTNEQV 69
                4788999***********************54.4445555533444244444444 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   7.7e-06     0.014      14      64 ..      11      63 ..       4      67 .. 0.83
   2 ?   -3.5   0.1       2.3   4.1e+03      73     109 ..     309     344 ..     298     361 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.7e-06
                HHHHHHHHHGG..G-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEE CS
        MeaB 14 eakellerlla..kaGraqvvGltGvPGaGkstlvealglelrrrGkrvavla 64
                ea+++++++la  ++G  + v +   PGaGkstlv + ++el+++G+   ++a
  KIR65360.1 11 EAERVVNAVLAdlRTGDHRGVVVDSPPGAGKSTLVVRAAVELAAAGEPLIIVA 63
                5666677766533689999999999*********************9988887 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.3
                 -----------HCCCTSTTEEEEEE-----HH.HHHHH CS
        MeaB  73 GGsilGDklRleelavdegvfiRslpsrGalG.Glaak 109
                 G  +  D++ +   ++d+ + iR+    Ga+G G++  
  KIR65360.1 309 GAPVTADRIAVGAAHRDQVAAIRAHL--GAAGaGITVD 344
                 55566777777777777777777643..3333234333 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0015       2.6       3      33 ..      31      62 ..      30      89 .. 0.69
   2 ?    3.7   0.0     0.023        41      45     100 ..     119     178 ..      99     197 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0015
                EEEEESTTCCHHHHHHHHH.CT--SS-EEEEE CS
        cobW  3 tvltGflGsGKTtLlnhll.enraglklaviv 33
                +v+ +++G+GK+tL+ +   e +a  +  +iv
  KIR65360.1 31 VVVDSPPGAGKSTLVVRAAvELAAAGEPLIIV 62
                58899*********988776443333333333 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.023
                 CCHCCCT.EEEETTTTECCH.CTT-HHHHHHHHHHHHTT-SE.EEEEECTTTTHHHH..H CS
        cobW  45 llretgveivelenGciCct.lredllkelealeereerldv.iliEttGlaePapv..a 100
                 ++  t++++  +++Gc + + + e  ++  +al++  +r+++ +++   G ++P     +
  KIR65360.1 119 VVIGTAAKWAMVTEGCWPWAiVDEAYQMRSDALLRVAGRFERaLFVGDPGQLDPFSTveT 178
                 556667889***********6666678889999999988874389999999999877443 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00024      0.43      10      77 ..      14      79 ..       8     109 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00024
                HHHHHHT......TTSEEE.EEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGG CS
      ResIII 10 eaienlleklkskrdkrgl.ikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkf 77
                ++++++l+ l  ++d+rg+ +  + G+GK+ + ++++ +l+ +g+    ++++++++ ++ +++++++ 
  KIR65360.1 14 RVVNAVLADLR-TGDHRGVvVDSPPGAGKSTLVVRAAVELAAAGE--PLIIVAQTNEQVDDLIDRLARK 79
                67899999999.6666555499*******************9876..9********9999988887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2953.35
//
Query:       KIR65361.1  [L=482]
Description: hypothetical protein TK50_07970 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3318.67
//
Query:       KIR65362.1  [L=320]
Description: glycosyl hydrolase family 5 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-07   30.3   0.0    7.8e-07   29.4   0.0    1.4  1  CBM_3     Cellulose binding domain
    1.6e-06   28.4   0.9    4.6e-06   26.9   0.5    2.1  2  fn3       Fibronectin type III domain


Domain annotation for each model (and alignments):
>> CBM_3  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   8.7e-11   7.8e-07       9      65 ..     158     214 ..     150     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 8.7e-11
                 CSETTEEEEEEEEEETSSS-EEGGGEEEEEEEE-SGCCSGEEEEEEEETTSGGGEEE CS
       CBM_3   9 sestntieikfkitNtgawaidlsdlkvRYyftldasekdvtvscdyaqlgssnvsg 65 
                   ++n+i+  ++++Ntg+++ dl +++v Y +t + +++++ ++cd+a+lg+  ++ 
  KIR65362.1 158 APTDNQIQFVAQVVNTGTQPLDLRTVRVDYHLTFEGGNTSLVTECDWAALGCDRIQR 214
                 5689*******************************999*************998875 PP

>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.5   5.1e-10   4.6e-06       3      85 .]      53     136 ..      51     136 .. 0.83
   2 ?   -2.4   0.0       0.7   6.2e+03      15      43 ..     152     163 ..     144     185 .. 0.63

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 5.1e-10
                 ECEEEEEEESSSEEEEEEE-CS....SSSSTEEEEEEEEEETTSTSTEEEEEECSTSS.EEEEESSSTTEEEEEEEEEEETSEEEEEE CS
         fn3   3 PsnlsvsevtstsltvsWeppk....dgggpitgYeveyrekgseeewneftvprttt.svtltgLkpgteYevrVqavngggegpes 85 
                 P+ + v ++ +++lt++W p+     +gg +   Yev + + g +   + + + +t+t s tlt L pgteY+v +qa++ gg++ +s
  KIR65362.1  53 PGAPVVVANEPHQLTLTWAPSAwvgePGGTEPITYEV-LVPLGPN---TYRGLGSTQTpSITLTALPPGTEYRVAIQAHTIGGYSDTS 136
                 778889999************9988889999999999.5555444...45557777666*********************99988766 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.7
                 EEEEEEE-CSSSSSTEEEEEEEEEETTST CS
         fn3  15 sltvsWeppkdgggpitgYeveyrekgse 43 
                 +l++ W p                  +++
  KIR65362.1 152 YLNLDWAPT-----------------DNQ 163
                 455555555.................333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 2052.82
//
Query:       KIR65363.1  [L=189]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-32  112.5   0.1      3e-32  112.2   0.1    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
      3e-11   43.6   0.0      4e-11   43.2   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    8.9e-06   25.4   0.7    0.00014   21.6   0.7    2.1  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
     0.0099   15.8   0.1       0.05   13.6   0.0    2.1  2  FR47             FR47-like protein
  ------ inclusion threshold ------
      0.027   14.1   0.1      0.042   13.4   0.1    1.2  1  GNAT_acetyltran  GNAT acetyltransferase
       0.06   13.5   0.0      0.065   13.4   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   0.1     1e-35     3e-32       1     138 []      12     153 ..      12     153 .. 0.89

  Alignments for each domain:
  == domain 1  score: 112.2 bits;  conditional E-value: 1e-35
  Acetyltransf_3   1 RLlLrplteeDlealfelrsdpevmry..lpepltleeaeewlera.....waeeseeegygwaivlkdtgviGsvglrdleeedeeaelgymla 88 
                     RL Lrp+  +Dl++++++ s+p+v+r+     p+t+++a + ++ +     +  ++e++ + +a+v  d +viG+v l +++  d++aelgy+l+
      KIR65363.1  12 RLALRPVALDDLDDVHAYQSRPDVTRWmlDAGPRTRAQALASVTAMagedaL--RAEGDCLALAVV-ADARVIGTVELVWRSAADRTAELGYVLH 103
                     9**************************86555*********99977655322..333344668885.66659*********************** PP

  Acetyltransf_3  89 psfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     p+++g+G+atea+ all++ f e gl+r +a+++++NeaS+r++ +lG++
      KIR65363.1 104 PDHHGRGLATEAATALLDWGFGEFGLHRAYARCHARNEASARLMARLGMR 153
                     ************************************************96 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   1.3e-14     4e-11      28     117 .]      63     152 ..      32     152 .. 0.82

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 1.3e-14
                     HHSTTCEEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  28 fsleaegllv.aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYeklGF 117
                     ++ e ++l + +  d ++iG++ l ++     ++++  +++ +p+++g+Gl+++  +al+++ + e g+++ ++ +++ n+a+ rl  +lG+
      KIR65363.1  63 LRAEGDCLALaVVADARVIGTVELVWRSA--ADRTAELGYVLHPDHHGRGLATEAATALLDWGFGEfGLHRAYARCHARNEASARLMARLGM 152
                     3333345555588899***********99..6667777*******************************999***************99995 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.7   4.6e-08   0.00014       4     141 ..      21     156 ..      19     159 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 4.6e-08
                     GGHHHHHHHCTSCCCHHHH-----HHHHHHHHHHHC.........STTEEEEEEEETTEEEEEEEEEEGGGCGGGGCS---TT-EEEEEEESSHH CS
  Acetyltransf_8   4 aDlellhrWmnrprvaewweeagtleevrellakld........adphsepliglldgepvgyfeiYwakedelaeyydaepgdrGiHlligeae 90 
                     +Dl+ +h+ ++rp v +w+ +ag++++ ++l    +        a+ +  +l +  d + +g +e+ w ++          + +  + +++  ++
      KIR65363.1  21 DDLDDVHAYQSRPDVTRWMLDAGPRTRAQALASVTAmagedalrAEGDCLALAVVADARVIGTVELVWRSAA---------DRTAELGYVL-HPD 105
                     699****************99998766655543221123333337777777777888888888888776655.........5555555555.689 PP

                     HCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEE CS
  Acetyltransf_8  91 argkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekek 141
                     ++g+gl+t+  +al+++ f + +  r  +  ++rNe++ rl++++G+++e 
      KIR65363.1 106 HHGRGLATEAATALLDWGFGEFGLHRAYARCHARNEASARLMARLGMRQEA 156
                     99*********************************************9876 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.78   2.3e+03      32      63 ..      45      76 ..      38      81 .. 0.68
   2 !   13.6   0.0   1.7e-05      0.05      16      80 ..      89     155 ..      82     162 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.78
                GG-SSSHHHHHHHHHHHHHHHS-S-EEEEEET CS
        FR47 32 ehrrrGlgsrlvkalakeiaergktvllvvva 63
                  r + l+s+ + a   +++++g+ + l vva
  KIR65363.1 45 RTRAQALASVTAMAGEDALRAEGDCLALAVVA 76
                55666677777777777777788777777665 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.7e-05
                 EEE-TT.SSEEEEEE-GGG-SSSHHHHHHHHHHH.HHHH.S-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  16 ilrkdg.gelgalqvlpehrrrGlgsrlvkalak.eiae.rgktvllvvvasNtpsirlyeklGfeki 80 
                 + + d   elg + ++p+h +rGl++  + al   +  e   + + +   a N++s rl  +lG ++ 
  KIR65363.1  89 RSAADRtAELGYV-LHPDHHGRGLATEAATALLDwGFGEfGLHRAYARCHARNEASARLMARLGMRQE 155
                 4444443566665.79*************99986367784457899999***************9876 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.4e-05     0.042     188     237 ..     102     155 ..      87     159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
  GNAT_acetyltran 188 TkedyrrkgLAtivaaalileclkr....glyPsWDaaneaSvaLaekLGYefe 237
                       ++d+ ++gLAt +a+al++  + +      y++  a+neaS++L  +LG ++e
       KIR65363.1 102 LHPDHHGRGLATEAATALLDWGFGEfglhRAYARCHARNEASARLMARLGMRQE 155
                      59*****************9765432222678888899************8876 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.2e-05     0.065      51     154 ..      71     172 ..      19     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.2e-05
  Acetyltransf_4  51 vflvaesdrivGyaylgqfkkr.akdwkaelsvylaerdnnkeglgrelidaleqvl.keqnienllaeiaspnensiqfhkalGFelvgifkkc 143
                      + v  + r++G+  l+   +r a d  ael + l + d   +gl+ e  +al +    e ++++ +a+  + ne+s+ ++++lG + +++  + 
      KIR65363.1  71 ALAVVADARVIGTVELV---WRsAADRTAELGYVL-HPDHHGRGLATEAATALLDWGfGEFGLHRAYARCHARNEASARLMARLGMRQEARHVES 161
                     55666677788887776...8889********999.589**********999998877********************************99999 PP

  Acetyltransf_4 144 ikkngrwiDmi 154
                     +   g+w D +
      KIR65363.1 162 YLFRGEWADRL 172
                     99999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1323.23
//
Query:       KIR65364.1  [L=283]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-45  154.9   0.0    2.7e-43  148.2   0.0    2.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.2   0.0   1.5e-47   2.7e-43      14     292 ..      25     263 ..      18     265 .. 0.96

  Alignments for each domain:
  == domain 1  score: 148.2 bits;  conditional E-value: 1.5e-47
                   TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S- CS
  Aldo_ket_red  14 eiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDllllHrp 110
                   +i++e+ +e++ rale G++++DtAe+Y    +e ++G+a+ +s+ +r+ev++++K+      ++  +++++ r++++ +l  L+ d++Dl+l+H+p
    KIR65364.1  25 QIAPEDTAEAVGRALEIGYRHIDTAEMY---GNEAEVGQAVRASGLDRDEVFVTSKL------NNGFHRPDDARRAFDSTLAALKMDHIDLFLIHWP 112
                   6889************************...9*************************......99999***************************** PP

                   -TTS-...HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS-- CS
  Aldo_ket_red 111 dpslp..sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliaysplggGlltgkyqsee 205
                    p+l+  +   ++++lee+++ G +r+iGvSnf+v +le++ +++ v ++++q+e +++  l +e+++ + +++++ + a+sp+++G+         
    KIR65364.1 113 LPTLYdgDFVSTWKVLEEFRRDGRARSIGVSNFQVPHLERLAAEADVVPAVNQIEVHPY--LGNEEVRAYGHAHNILTEAWSPIAQGAVL------- 200
                   ****9999***************************************************..**************************998....... PP

                   -SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 206 dkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                                          +++l ++a+e g ++ q++lr+ +  +++ iv p++ n++++ +n++ ++++l++ +++++  l
    KIR65364.1 201 ----------------------DDPTLVDVAEEVGRTVPQVVLRWHV--QRGDIVFPKSVNPKRMAENFQIFDFELDDATMERITGL 263
                   ......................5789*********************..9*********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2027.65
//
Query:       KIR65365.1  [L=400]
Description: ribonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-40  137.9   0.1    6.2e-40  137.3   0.1    1.2  1  Endonuclease_1  Endonuclease I


Domain annotation for each model (and alignments):
>> Endonuclease_1  Endonuclease I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.3   0.1   3.4e-44   6.2e-40       1     233 []     184     393 ..     184     393 .. 0.81

  Alignments for each domain:
  == domain 1  score: 137.3 bits;  conditional E-value: 3.4e-44
  Endonuclease_1   1 tgytlKteLakiikndsdksysglwtlyktsdldkyyendgsvldlysenptgadvsftygtnqcgstkqegecynrEHivPasv..fgeqrqpm 93 
                     tg +l++ L  ii ++++ +y+++w+++k++d d    n ++vl lys +           ++++++    ++ +nrEH+  +s   fg ++ p 
      KIR65365.1 184 TGTALRSSLHAIIRTQTKLNYDQVWEALKDTDQD--PANANNVLLLYSGRS----------QSKTSNGGDAND-WNREHVWAKSHgdFGTATGP- 264
                     7899******************************..************433..........333333334444.*******8876559999988. PP

  Endonuclease_1  94 esDahhvvptdgevNadRsnfpygevatatytskngskkpenlgssnvadykstvfEPidefkGdiARallYmatrYenk..iakaqsk..vldg 184
                      +D+hh++p d+ vN++R+n  +            gs     + +++    +   fEP++ +kGd+AR+++Yma rYe      + + +  v +g
      KIR65365.1 265 GTDVHHLRPEDVSVNSTRGNKDFDAG---------GSG----VSECTGCYSDADSFEPRNAVKGDVARMIMYMAIRYEGDdgWPNLEINnsVSNG 346
                     ***********************544.........666....5555555334689**********************976113444433346666 PP

  Endonuclease_1 185 ssdqvfektllnlllkWhkqdPvsakEiernnaiaa.vqgnrNPfidhpe 233
                     +s+  + +  l +ll+W+  dP +a+E++rn++i++  qgnrNPf+dhpe
      KIR65365.1 347 TSP--Y-HGKLSVLLAWNLADPPDAFEKRRNQVIYDrWQGNRNPFVDHPE 393
                     655..3.456899**********************626***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2856.77
//
Query:       KIR65366.1  [L=264]
Description: hypothetical protein TK50_08000 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00034   20.0  13.6    0.00034   20.0  13.6    2.1  1  ABC2_membrane_2  ABC-2 family transporter protein
     0.0018   18.3   7.3     0.0061   16.5   7.2    1.9  1  ABC2_membrane_4  ABC-2 family transporter protein
  ------ inclusion threshold ------
      0.035   14.2   1.5      0.035   14.2   1.5    2.7  3  BTP              Chlorhexidine efflux transporter
      0.091   10.9   1.7       0.11   10.6   1.7    1.0  1  UPF0182          Uncharacterised protein family (UPF0182)
       0.36   10.7  11.3       0.06   13.2   6.7    1.9  2  DUF2062          Uncharacterized protein conserved in bacteri
        4.1    5.6  10.5        5.6    5.1  10.5    1.1  1  DUF2070          Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0  13.6   1.1e-07   0.00034      87     286 ..      84     261 ..      62     263 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.1e-07
  ABC2_membrane_2  87 viaalfgadaiagEkergTlkllLskPvsRdeillgKfigglaigla.iavallatvllalaiilalgi...vlaledllllvvasvlllllvv 176
                      ++  ++g+ +i+ E+ ++T    +++   R  ++++K+ + ++++la ++v+l ++ l  l+  + +g    +++++ ll  v++ v+ +l  +
       KIR65366.1  84 LLLPVLGILSITAEWSQRTALTTYALVPRRERVIVAKLAAVVLAALAsVLVSLAVAALGNLVAGATGGAadwSFEGSRLLHAVLFEVTNVL--M 175
                      456689**************************************************99988877777652226899999999999999999..4 PP

  ABC2_membrane_2 177 flalglllSsvarssreaaalalglfvvlailvpivlygvaellagpavpqeindflsllsptsayntllneilagsdlnalgstatnllilll 270
                       +a+glll     s+  a   +l l  v  +l+++++    +                l  p+++ +t++   +  +++ + g+ +   ++ll+
       KIR65366.1 176 GAAFGLLL----LSTPLAVVSYLLLPTVWTLLSGMIA----A----------------LREPARWLDTARTMEPLLGPEVTAGQWGRLGVSLLV 245
                      47777765....3333444444444444444455554....2................334777777777777777777777778899999999 PP

  ABC2_membrane_2 271 llavllvlgyvlFkrk 286
                      +la +l+ g+ +  r+
       KIR65366.1 246 WLALPLAAGLIRTLRR 261
                      9999999999776665 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   7.2   2.1e-06    0.0061      14     158 ..      42     191 ..      28     209 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.1e-06
  ABC2_membrane_4  14 ivwllvlaallvpllallyfnllgktgldpaefyslsvfgftlllllplilgiiasylifrEeqndt.lknLltiPvsrtklllaKlivlllls 106
                        wll  +al+ ++l+++    l++++   +ef+  + ++ +l  llp +lgi    +i+ E ++ t l    ++P+ ++ +++aKl++++l +
       KIR65366.1  42 GRWLLAGIALVSVVLVVVQLSVLADEEQTFTEFFVPQLLPAGL--LLP-VLGI---LSITAEWSQRTaLTTYALVPRRER-VIVAKLAAVVLAA 128
                      4688888999999999898888887777777777766666553..444.4444...568899888872556679998777.************* PP

  ABC2_membrane_4 107 vllmlvtflitvlfallsgfvgfs..vk....l....vlellkkcl.elgllvffavlpiial 158
                      ++ +lv++++++l  l++g +g    ++         vl+ +  +l   + +++++++p+ ++
       KIR65366.1 129 LASVLVSLAVAALGNLVAGATGGAadWSfegsRllhaVLFEVTNVLmGAAFGLLLLSTPLAVV 191
                      *****************9998654113332222222222222222212333333334444333 PP

>> BTP  Chlorhexidine efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.4         2     6e+03      31      40 ..      49      58 ..      42      65 .. 0.46
   2 ?   -2.2   0.9       1.5   4.5e+03      23      28 ..     128     133 ..     116     153 .. 0.52
   3 ?   14.2   1.5   1.2e-05     0.035       5      35 ..     160     190 ..     159     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2
         BTP 31 vslleagvld 40
                + l++++++ 
  KIR65366.1 49 IALVSVVLVV 58
                2333333332 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
         BTP  23 pllawl 28 
                  l+++l
  KIR65366.1 128 ALASVL 133
                 222222 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 1.2e-05
         BTP   5 eRvlHallFElglllllvpllawllgvslle 35 
                  R+lHa+lFE+  +l+ + ++ +ll+ +l+ 
  KIR65366.1 160 SRLLHAVLFEVTNVLMGAAFGLLLLSTPLAV 190
                 59*********************99998865 PP

>> UPF0182  Uncharacterised protein family (UPF0182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.7   3.7e-05      0.11      49     171 ..      47     200 ..      31     227 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.7e-05
     UPF0182  49 vvvflllalllllnlllaerl...................ell.............eklerlrealekklkllllaialvlsllvglvassqwekvllf 115
                 + ++l++++l++++l + +                     + +             ++l++++ + ++++ +++ ++a+vl++l+++++s  ++ +  +
  KIR65366.1  47 AGIALVSVVLVVVQLSVLADEeqtfteffvpqllpaglllP-VlgilsitaewsqrTALTTYALVPRRERVIVAKLAAVVLAALASVLVSLAVAALGNL 144
                 33333444444444444222223344444444444333330.034444444444446788899999999999999************************ PP

     UPF0182 116 lnstsfgvkDpifgkDisFYvFklPflelllslllalvllaliavllvyllsgesl 171
                 + +++ g +D  f+      +  + + ++l++++++l+ll++ ++++ yll  ++ 
  KIR65366.1 145 VAGATGGAADWSFEGSRLLHAVLFEVTNVLMGAAFGLLLLSTPLAVVSYLLLPTVW 200
                 ***********************************************999987554 PP

>> DUF2062  Uncharacterized protein conserved in bacteria (DUF2062)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.54   1.6e+03      81     118 ..      42      80 ..      35      96 .. 0.44
   2 ?   13.2   6.7     2e-05      0.06      49     141 ..     110     202 ..     100     206 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.54
     DUF2062  81 Galllgeeaeal....slseleelgl.ewlleslleiglplll 118
                 G++ll      +     +  + +l++ ++  ++++e+++p ll
  KIR65366.1  42 GRWLLAG----IalvsVVLVVVQLSVlADEEQTFTEFFVPQLL 80 
                 5555321....01122122223333333333444555555554 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2e-05
     DUF2062  49 lllrvnlpaavagtwisnPltlppiyylayklGalllgeeaealslseleelglewlleslleiglplllGslilglilallgYflvlllwrl 141
                 ++ r  +++a ++ ++   l  +++ ++   lG+l+ g +  a+++s   +  l+ +l +++++++   +G+l+l+++la+++Y+l+  +w l
  KIR65366.1 110 VPRRERVIVAKLAAVVLAALASVLVSLAVAALGNLVAGATGGAADWSFEGSRLLHAVLFEVTNVLMGAAFGLLLLSTPLAVVSYLLLPTVWTL 202
                 555677788888888888999999999999******999988886666666656899******************************999976 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  10.5    0.0019       5.6      10     170 ..      40     194 ..      34     214 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0019
     DUF2070  10 rlPswkvsllliillalligllaflssklfgillfglpalvaflltlpvlrilggrltykrslflalltelivviisllaillsall..qalvllalvl 106
                 r+ +w ++ ++++ ++l++  l++l+ + +++  f++p l+ + l+lpvl il+++ ++++ + l   ++++    +++a l++++l   a+vl +l++
  KIR65366.1  40 RAGRWLLAGIALVSVVLVVVQLSVLADEEQTFTEFFVPQLLPAGLLLPVLGILSITAEWSQRTALTTYALVPRRERVIVAKLAAVVLaaLASVLVSLAV 138
                 466777777777777777777777777789999****************************98888888888655555555555555344566666666 PP

     DUF2070 107 s...lalvfalrllvlvavsdesllkavlpaliqpllailllvlyfspesfllllllslifalavyl 170
                 +     ++ a      +++ +++ll+avl  ++  l+++++ +l+           ls  +a+++yl
  KIR65366.1 139 AalgNLVAGATGGAADWSFEGSRLLHAVLFEVTNVLMGAAFGLLL-----------LSTPLAVVSYL 194
                 533211222222223355555555555555555555555555555...........22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 1779.20
//
Query:       KIR65367.1  [L=299]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-24   85.1   0.0    7.8e-24   84.7   0.0    1.2  1  ABC_tran  ABC transporter
    2.7e-10   40.5   0.1    3.3e-06   27.1   0.0    2.1  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
  ------ inclusion threshold ------
      0.011   16.3   0.1      0.016   15.7   0.1    1.1  1  AAA_23    AAA domain
      0.032   14.0   0.1      0.062   13.0   0.1    1.4  1  AAA_29    P-loop containing region of AAA domain
       0.13   12.5   0.0        0.6   10.4   0.0    2.0  1  AAA_22    AAA domain
       0.17   11.5   0.0       0.41   10.2   0.0    1.6  1  AAA_27    AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   2.6e-27   7.8e-24       2     137 .]      18     157 ..      17     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 2.6e-27
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.........esdeeiekalsk 91 
                 ++vs+++ +g++++++G+nGaGKSt +++l+gl+ pt+G+ ++ g + ++  l    +eigvl   +    + t re            ++e++  l+ 
  KIR65367.1  18 DDVSFTCAPGSVTGFLGPNGAGKSTTMRMLCGLTPPTAGTATVCGVPYRR--LANPGREIGVLLDASAQHAGRTGREVlalaaavmgVPRREVDVKLDL 114
                 89*******************************************99999..**************888888889999999999665444445555555 PP

                 STTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  92 lglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +gl       ++++   +S G++qr+ la all +p++l+lDEp +
  KIR65367.1 115 VGLGA---AAARRRVGAYSLGMRQRLGLAHALLGDPRVLVLDEPAN 157
                 55544...5555567*****************************86 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   7.2e-05      0.21       1      19 [.      29      47 ..      29      56 .. 0.88
   2 !   27.1   0.0   1.1e-09   3.3e-06     237     297 ..     129     186 ..     117     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.2e-05
      AAA_21  1 lnvliGpNgsGKSnLLdal 19
                ++++ GpNg+GKS+ ++ l
  KIR65367.1 29 VTGFLGPNGAGKSTTMRML 47
                6899**********99876 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 1.1e-09
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  S G+++ l+l+ all ++   ++l++DEp ngL+P+ +    +ll++ +++g+ v+l++H
  KIR65367.1 129 YSLGMRQRLGLAHALLGDP---RVLVLDEPANGLDPEGIFWMRGLLRDFADRGGTVLLSSH 186
                 599*************999...**************6666666888999999********* PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.1   5.3e-06     0.016      21      40 ..      29      48 ..      17      52 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.3e-06
      AAA_23 21 ltlItGpNGaGKTTildAik 40
                +t + GpNGaGK+T ++ ++
  KIR65367.1 29 VTGFLGPNGAGKSTTMRMLC 48
                899*************9988 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.1e-05     0.062      14      39 ..      19      44 ..      15      56 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.1e-05
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTll 39
                + +++  + ++t + Gp+G+GKST +
  KIR65367.1 19 DVSFTCAPGSVTGFLGPNGAGKSTTM 44
                5566777777999***********76 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0002       0.6      11     117 ..      33     176 ..      27     191 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0002
      AAA_22  11 tGesGtGKTtllrrlleqldeeakaee.............erpevv.fvtlpsst.sskdllrellralglelka..............erlsseell. 79 
                  G+ G+GK+t++r+l    +  a  ++             ++ +v+    +++ + + +++l   +  +g+++ +              +r +  ++  
  KIR65367.1  33 LGPNGAGKSTTMRMLCGLTPPTAGTATvcgvpyrrlanpgREIGVLlDASAQHAGrTGREVLALAAAVMGVPRREvdvkldlvglgaaaARRRVGAYSl 131
                 59************9988877666666888888888766544444443333344466777776666666766666777777766666654444444443 PP

      AAA_22  80 ealeqalrarav...ielliiDEaqh.lr..seealeeL.rslln 117
                  + ++   a+a    +++l++DE  + l+      ++ L r++++
  KIR65367.1 132 GMRQRLGLAHALlgdPRVLVLDEPANgLDpeGIFWMRGLlRDFAD 176
                 333333333333778888888888777754223333333344444 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00014      0.41      17      46 ..      18      47 ..       4      51 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00014
      AAA_27 17 rsldfsaeeadlhliyGpNEAGKstalrAi 46
                  ++f  +  +++  +GpN AGKst++r +
  KIR65367.1 18 DDVSFTCAPGSVTGFLGPNGAGKSTTMRML 47
                4677777777888889**********9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2507.90
//
Query:       KIR65368.1  [L=444]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-16   59.1   3.1    4.5e-16   59.1   3.1    2.5  3  HisKA_3    Histidine kinase
  ------ inclusion threshold ------
      0.011   16.3   0.0      0.017   15.6   0.0    1.3  1  HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like A
      0.044   13.6   3.1      0.064   13.1   3.1    1.2  1  Bax1-I     Inhibitor of apoptosis-promoting Bax1


Domain annotation for each model (and alignments):
>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.4      0.99   5.9e+03      32      46 ..     188     202 ..     175     204 .. 0.55
   2 !   59.1   3.1   7.5e-20   4.5e-16       1      66 [.     207     272 ..     207     274 .. 0.97
   3 ?   -0.8   0.0      0.37   2.2e+03      38      57 ..     337     356 ..     318     358 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.99
                 TT-HHHHHHHHHHHH CS
     HisKA_3  32 ekdpekaaeqlreie 46 
                 ++d ++a++qlr ++
  KIR65368.1 188 RADRAEAEQQLRVAQ 202
                 234446777776665 PP

  == domain 2  score: 59.1 bits;  conditional E-value: 7.5e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLrpa 66 
                 ER+riARE+HD++++++s+++l++++++ + +++pe++a+++  i+e a+ al+++R++++ Lr +
  KIR65368.1 207 ERTRIAREMHDVLAHRISLLSLHAGALEFRPDAPPEQVARAAGVIRESAHAALADLRDVIGVLRAD 272
                 9***************************************************************65 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.37
                 HHHHHHHHHHHHHHHHHHHH CS
     HisKA_3  38 aaeqlreieelarealqevR 57 
                 ++e+l++++++a +a   vR
  KIR65368.1 337 VQEALTNARKHAAGATVTVR 356
                 56777777777777776666 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.0   2.9e-06     0.017       5     108 ..     332     440 ..     328     443 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.9e-06
                 HHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE...TEEEEEEEESS.......SSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEE CS
   HATPase_c   5 rLrqiisnlvdNavkfatkageieveikase...ddlvisveDnG.......iGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiw 93 
                   ++i++++++Na k+ + + +++v++         l++ v++         +G p+  +++++ +     +++    g G Gl  v + v+l gG+++
  KIR65368.1 332 TAYRIVQEALTNARKH-AAGATVTVRLA--GaagTGLTVDVRNRRpvgghplPGRPVGGHPQSGRPVGA--GERAAIPGAGTGLIGVAERVSLAGGRLT 425
                 5689************.88999999999..335789*******77776777788888888877777776..666667899999****999999****99 PP

                 EEEETTTEEEEEEEE CS
   HATPase_c  94 vesepgrGttftftl 108
                    ++++  + t +l
  KIR65368.1 426 HGRDETGDFRLTAWL 440
                 966665555555555 PP

>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.1   1.1e-05     0.064      13     138 ..      42     169 ..      36     184 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
      Bax1-I  13 lgllltalvaavvlsspa.qlflslhivlflv.vilaplalvflslsaarlkkkssalalallllftlleGlslspillvyt.gaiilqaflltaaifg 108
                 l+l+ +++va+ ++++++  + + +h +l  +  +l+pla+   + +++r+     a+a++ l+lf++ +G+ l +i++ +       qa+l+ +a + 
  KIR65368.1  42 LALGWAVAVAWDAAQPEPaLAGPLPHEWLQGLdNVLGPLACAA-L-WLRRRWPVGLAVATLPLGLFSATAGVALLIIMFTVVvHRPFPQAALVVGANVL 138
                 4455566666666666655555556665555577777888874.3.444555567778899999*********99998888789999999888888777 PP

      Bax1-I 109 glslyaltt.krdlsglggflfagligliia 138
                  +  ya++   r + ++g ++ a ++   ++
  KIR65368.1 139 TCFSYAAVRpERGFGFWGEVAWAIVFLGSVL 169
                 7777777665999999999887666533333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3616.95
//
Query:       KIR65369.1  [L=141]
Description: hypothetical protein TK50_08020 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-05   24.4   0.0    3.9e-05   24.0   0.0    1.1  1  DUF234    Archaea bacterial proteins of unknown function


Domain annotation for each model (and alignments):
>> DUF234  Archaea bacterial proteins of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   2.2e-09   3.9e-05      12      91 ..       3      86 ..       1      93 [. 0.82

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2.2e-09
      DUF234 12 ielgeseevlekikeelneyvgkvFEelvrelllelnkagklpfrftkvGrwWkkee..eiDivaldeeekk...alfgEvKwkn 91
                +++g+ + +l +i+++++++ g + E  vre+l++l  a++lp   ++vG +W++ +  ei +v++d e  +    ++g +Kw +
  KIR65369.1  3 VSRGRGDLTLARITTSWTTWRGRAIEPAVREALRRL-PADRLPEGTSAVGGFWTRTNnpEIGLVGADREPVArrvTFVGSIKWLE 86
                5678889999************************66.6689************744445*******9975433336778899977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1092.66
//
Query:       KIR65370.1  [L=220]
Description: hypothetical protein TK50_08025 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      129  (0.00719505); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 1436.26
//
Query:       KIR65371.1  [L=213]
Description: hypothetical protein TK50_08030 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1663.01
//
Query:       KIR65372.1  [L=154]
Description: pyridoxamine 5'-phosphate oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-14   53.2   0.0    3.7e-14   52.7   0.0    1.2  1  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
    1.6e-05   24.5   0.0    2.2e-05   24.1   0.0    1.1  1  Pyrid_ox_like   Pyridoxamine 5'-phosphate oxidase like


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   4.2e-18   3.7e-14       7      85 ..      18      96 ..      12      99 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 4.2e-18
                    HHHHHSSEEEEEEEETTSEEEEEEEEEEEETTTTEEEEEEETTSHHHHHHHHH-EEEEEEEETT.GSEEEEEEEEEEEES CS
  Putative_PNPOx  7 eflaeskavvlATvdedGrPnvspvllkagdgrdgivfatnadsrklrnleenprvallfldde.lgrgvrieGtaelvs 85
                    +f++ ++ v l T + dGrP++spv    +++  ++v++t  +++k+rn++++prv+ ++l+d+ +g +v+++Gtae+++
      KIR65372.1 18 DFIRPRHRVLLMTTRSDGRPQSSPVACGVDPEG-RLVISTYPERAKARNIRRDPRVSACVLSDDwDGPWVQVDGTAEVLD 96
                    677777888999999*************99999.*******************************************986 PP

>> Pyrid_ox_like  Pyridoxamine 5'-phosphate oxidase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   2.4e-09   2.2e-05       6      86 ..      16      96 ..      12     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 2.4e-09
  Pyrid_ox_like  6 lkelvkdiktamLttteadgklksrPMatqkveedgdlwfltkkdsdkvkeirkdsqvnlafsdes.kkkyvsvsGtaevve 86
                   l + ++  +  +L+tt++dg+ +s P a   v+ +g+l   t  +  k+++ir+d++v++++ + + +  +v+v Gtaev +
     KIR65372.1 16 LIDFIRPRHRVLLMTTRSDGRPQSSPVAC-GVDPEGRLVISTYPERAKARNIRRDPRVSACVLSDDwDGPWVQVDGTAEVLD 96
                   566677777778888889********986.7899************************999866542789*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1131.86
//
Query:       KIR65373.1  [L=214]
Description: potassium transporter TrkA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-23   81.2   0.1    9.6e-23   81.0   0.1    1.0  1  NAD_binding_10  NAD(P)H-binding
    1.3e-07   31.4   0.5    1.8e-07   31.0   0.5    1.2  1  NmrA            NmrA-like family
    8.4e-05   22.1   0.2    0.00014   21.5   0.2    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
     0.0025   17.6   1.1     0.0066   16.2   1.1    1.6  1  DUF4774         Domain of unknown function (DUF4774)
  ------ inclusion threshold ------
      0.093   12.8   0.2       0.15   12.2   0.2    1.3  1  DapB_N          Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.1   2.7e-26   9.6e-23       1     184 []       8     203 ..       8     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 2.7e-26
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC...HHHHHHHHHHHHHHC.T-- CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggk...deegaknivdaakea.gvk 91 
                     GA G  G+++++e++ar gh+vta vR+pe ++ l+  +g+++v+gdvt++ +++e    ad+ v+a+gg+++    +++a+n+v++++e  +  
      KIR65373.1   8 GAGGTAGSRITAEAVAR-GHRVTAAVRRPEATSYLP--AGVDLVTGDVTSAHSVRELAPAADVMVVAVGGDEGralWRDAAENLVTVLREVpNPP 99 
                     9****************.5**************997..8************************99999887775776677*********963799 PP

                     EEEEEEETTTTSGCGCHHHHHHHH.CCHHHHHHHHHHHHHHHH.....SSSEEEEEEE-CEE-ST...--SEEEEETTSS-...---EEEHHHHH CS
  NAD_binding_10  92 Rfvlvsaigvgdevpgefgewnke.llkaylaakraaeellra.....sgldwTivrpggLtdep...ttkyrvvekgepf...kggsisradVA 174
                     R++ v++  +   +pg ++ + +  + ++y +    +++ l        g++wT v+p+ L+  p   t+ yr++ +++     +++  s +d+A
      KIR65373.1 100 RIIHVGGGATL-LTPGGTPYLEEPdFPEEYRDSALGQADALAWyrsaaDGVTWTYVSPPPLEFHPgerTGHYRTGLDEPVTderGRAALSYEDLA 193
                     *****998777.5788777777651555555444444444433333558************9875444567777755443311145699****** PP

                     HHHHHHCTXG CS
  NAD_binding_10 175 dvlvavlddp 184
                      ++v+ +++p
      KIR65373.1 194 VAVVDEIENP 203
                     *****99997 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.5     5e-11   1.8e-07       1      76 [.       4      74 ..       4      96 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 5e-11
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GGS CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfys 76
                ++v+Ga G  G+ +++ ++++gh+v a vR ++   a+s   aGv lv gd+ +  s++e+   +dv+ +++g  +
  KIR65373.1  4 VVVFGAGGTAGSRITAEAVARGHRVTAAVRRPE---ATSYLPAGVDLVTGDVTSAHSVRELAPAADVMVVAVG--G 74
                78****************************875...778889**************************99988..4 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.2   3.8e-08   0.00014       1      72 [.       4      72 ..       4      94 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.8e-08
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE-- CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlA 72
                ++V Ga G  Gs ++ +  ++g++v++  r+++a  + + + ++lv++d+t + ++++l    ++d+ + + 
  KIR65373.1  4 VVVFGAGGTAGSRITAEAVARGHRVTAAVRRPEAT-SYLPAGVDLVTGDVTSAHSVRELAP--AADVMVVAV 72
                689****************************5554.5667778***************988..677777663 PP

>> DUF4774  Domain of unknown function (DUF4774)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.1   1.8e-06    0.0066      12      47 ..       6      41 ..       4      47 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.8e-06
     DUF4774 12 vaGkgGvAisaPvgtaivkkGkkglalaaPdavAia 47
                v G gG+A+s+ +++a++++ + + a+ +P+a+++ 
  KIR65373.1  6 VFGAGGTAGSRITAEAVARGHRVTAAVRRPEATSYL 41
                679***************88888889*******985 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   4.1e-05      0.15       2      72 ..       3      69 ..       2      72 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.1e-05
                EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEBSSHHHHHHH-SEEE CS
      DapB_N  2 kvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavtddleevlekadvli 72
                +v+v+Ga G+ G++++  + + ++++++aav r+e +++   a   ++l + +v+  +++ e++ +adv++
  KIR65373.1  3 NVVVFGAGGTAGSRITAEAVA-RGHRVTAAVRRPE-ATSYLPA--GVDLVTGDVTSAHSVRELAPAADVMV 69
                69*************999998.9**********98.3333333..34444566666777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1594.34
//
Query:       KIR65374.1  [L=410]
Description: beta-lactamase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-70  236.5   4.3    5.3e-70  236.3   4.3    1.0  1  Beta-lactamase  Beta-lactamase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.3   4.3   2.9e-74   5.3e-70       1     327 [.      22     403 ..      22     406 .. 0.95

  Alignments for each domain:
  == domain 1  score: 236.3 bits;  conditional E-value: 2.9e-74
                     HHHHHHHHHHHTTESEEEEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTST........... CS
  Beta-lactamase   1 ldrlvrelmaqggipGvavavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylP........... 84 
                     +d+++ +++++g+++G +++v+r+g++ + + +G++d+e+g pv +dt++r++S+tK++t++a+++l+eeG+++L dp+ ++lP           
      KIR65374.1  22 IDEHFGRYVDDGRLAGWQIVVTRRGEIAHSATYGMRDREAGLPVEPDTIWRVYSMTKPITSVAAMMLWEEGRFELTDPIGRWLPefadvrvydkg 116
                     5789999**************************************************************************************** PP

                     ....TCTTGGGTTEBHHHHHTTHSSCSSSSTSTTCTSHHHTH.............HHHHHHHHHSBSSSSTTSCEE-SHHHHHHHHHHHHHHHTS CS
  Beta-lactamase  85 ....efagpgkgkiTlrdLltHtsGlpdlfasdlleeaaada.............aellralatlppkyapGtkwgYsntgygllgellekvtgr 162
                         +++ p+ ++i++ +LltH sGl ++fa   + ++ ++a             a + + la+lp+ ++pGt w+Y   ++ +lg+l+e v+g+
      KIR65374.1 117 pvtkPYTVPAVEPIRIWHLLTHMSGLTYGFAQVSVVDGLYRAagfdlgvpvgadlAAASQGLARLPLLFQPGTGWNYGVSTD-VLGRLIEVVSGQ 210
                     **********************************************************************************.************ PP

                     HHHHHHHHHTTTTTTSTTEESSTTGGGGGGBEEEEEEETCEEECSCETTHHHHC........TTTBEEEEHHHHHHHH..........HHHHHCC CS
  Beta-lactamase 163 sleqllreeilrpLgmkdtelgppesgdprdaagytgngpearappanlpaeae........gagglistardlarfl..........glalegg 239
                     +l+++l  +i+rpLgm+dt++++ e++++r+aa+y ++++++ a +a++    +        g+ggl+sta+d+ rf           g++l+g+
      KIR65374.1 211 RLDEFLAARIFRPLGMTDTGWWVEEADAKRLAALYFPHPATGQAIRADALGRLAltapdflsGGGGLVSTAADYHRFTqfllrggeldGVRLLGP 305
                     ***********************************7777776666666666666***************************************** PP

                     SSSSHHHHHHHHHHHTSEEEECTTEEEEC......ECSSEEEEECCH......TEEEEEEESTEEEEEEEECGGTEEEEEEESBCSSHHHHHHHH CS
  Beta-lactamase 240 lllsaetlaqltaklssgttrpagiragl......glGwvladktga......pgtfghtGggygtyvfvdpeanlvvavltnrdppnedaaeda 322
                     ++++ +t+++l + +    ++p g+++++      glG+ + + + +      +g ++++G +++t+++vdp+++++++++t+ +p+   ++ ++
      KIR65374.1 306 RTVRFMTRNHLPDGRDLASYSPTGFAETVldgigfGLGFAVVQDPVPsrvpssAGEYYWGG-MASTAFWVDPAEEVTAMLFTQLMPS-STHPLRP 398
                     ***********9999999999999999999*9977777777777777**************.************************8.8777777 PP

                     HHHHH CS
  Beta-lactamase 323 rlial 327
                     +l+ l
      KIR65374.1 399 QLRQL 403
                     76655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3079.24
//
Query:       KIR65375.1  [L=197]
Description: pentapeptide repeat family protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-25   87.4   7.8    1.8e-10   40.3   0.3    4.3  4  Pentapeptide    Pentapeptide repeats (8 copies)
    2.7e-17   62.7   0.3    5.5e-11   42.5   0.0    3.2  2  Pentapeptide_4  Pentapeptide repeats (9 copies)
    2.1e-12   47.0  12.2     0.0009   19.3   0.0    4.2  4  Pentapeptide_3  Pentapeptide repeats (9 copies)
  ------ inclusion threshold ------
      0.013   15.4   0.0       0.25   11.3   0.0    2.2  1  DNA_ligase_OB   NAD-dependent DNA ligase OB-fold domain


Domain annotation for each model (and alignments):
>> Pentapeptide  Pentapeptide repeats (8 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   4.1e-06     0.019       3      34 ..      25      56 ..      24      59 .. 0.87
   2 !   24.4   0.5   3.6e-09   1.6e-05       8      39 ..      65      96 ..      61      96 .. 0.73
   3 !   24.7   0.0   2.9e-09   1.3e-05      13      40 .]     110     137 ..     106     137 .. 0.75
   4 !   40.3   0.3   3.9e-14   1.8e-10       1      39 [.     128     166 ..     128     166 .. 0.98

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.1e-06
                  -TT-B-CCSCCEECCCESEEECT-B-TT-EEC CS
  Pentapeptide  3 LsgAnLsganLsganlsgAnLtgAnlsgAdLs 34
                  + ++ + + +L++a  +gA++t++ + +  ++
    KIR65375.1 25 FVRCEFFHVDLTEAVSRGAVFTECVFGNVAFN 56
                  7899999****************999887765 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 3.6e-09
                  -CCSCCEECCCESEEECT-B-TT-EECCEEEC CS
  Pentapeptide  8 LsganLsganlsgAnLtgAnlsgAdLsganLs 39
                  ++ + ++++nl +A +tg+ l g+ + +++L+
    KIR65375.1 65 FTRCVFKRCNLFEAEFTGCKLVGSSFDQCDLR 96
                  77777777777777777777777777777775 PP

  == domain 3  score: 24.7 bits;  conditional E-value: 2.9e-09
                   CEECCCESEEECT-B-TT-EECCEEECT CS
  Pentapeptide  13 LsganlsgAnLtgAnlsgAdLsganLsg 40 
                   L ga+l+g  Lt++ ++ AdL ga+L+g
    KIR65375.1 110 LPGADLRGVRLTDVRMREADLAGADLTG 137
                   7788888888888888888888888876 PP

  == domain 4  score: 40.3 bits;  conditional E-value: 3.9e-14
                   -B-TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEEC CS
  Pentapeptide   1 AnLsgAnLsganLsganlsgAnLtgAnlsgAdLsganLs 39 
                   A+L gA+L+ga  +g++lsgA L+g+ l +AdL+g++Ls
    KIR65375.1 128 ADLAGADLTGATVTGVDLSGAQLHGSRLLRADLRGSDLS 166
                   89***********************************97 PP

>> Pentapeptide_4  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   2.4   1.4e-05     0.063       7      59 ..      24      66 ..       6      68 .. 0.42
   2 !   42.5   0.0   1.2e-14   5.5e-11       2      70 ..      64     152 ..      63     174 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
  Pentapeptide_4  7 sfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFs 59
                    +f +c +  v+++ea              ++F+ec++ +v f+  +  +++F+
      KIR65375.1 24 HFVRCEFFHVDLTEAVS----------RGAVFTECVFGNVAFNASRHVDSAFT 66
                    33333333333333333..........44444444444444444444444444 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 1.2e-14
  Pentapeptide_4   2 eftrcsfnncklsnvnFsearlrdcnFtecrl....................snvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd 70 
                      ftrc f++c+l +++F+ ++l +++F +c+l                      v++++   +++d+a++dl+ a+ +g++l+++ +++
      KIR65375.1  64 AFTRCVFKRCNLFEAEFTGCKLVGSSFDQCDLrplrvdggdwsfvalpgadlRGVRLTDVRMREADLAGADLTGATVTGVDLSGAQLHG 152
                     69*************************************99988888666664444444444444444444444444444444444443 PP

>> Pentapeptide_3  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         2   9.1e+03      35      39 ..       7      11 ..       6      13 .. 0.43
   2 !   14.0   4.4   9.4e-06     0.042       1      44 [.      25      65 ..      25      69 .. 0.85
   3 !   15.4   1.7   3.4e-06     0.015      12      44 ..      65      95 ..      62     102 .. 0.52
   4 !   19.3   0.0     2e-07    0.0009       9      47 ..     113     148 ..     109     163 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2
  Pentapeptide_3 35 garFt 39
                    +a+F 
      KIR65375.1  7 DATFR 11
                    33443 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 9.4e-06
  Pentapeptide_3  1 FsganFsgaadFrgatFsgaasFsnadFgsadFsgarFtgdvdF 44
                    F++++F    d+++a+ +ga+ F++++Fg++ F  +r   d+ F
      KIR65375.1 25 FVRCEFFHV-DLTEAVSRGAV-FTECVFGNVAFNASRHV-DSAF 65
                    99*******.**********6.**********9877655.5555 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 3.4e-06
  Pentapeptide_3 12 FrgatFsgaasFsnadFgsadFsgarFtgdvdF 44
                    F++++F+++ +  +a F+++ + g+ F+  +d+
      KIR65375.1 65 FTRCVFKRC-NLFEAEFTGCKLVGSSFD-QCDL 95
                    444444444.444444444444444444.4444 PP

  == domain 4  score: 19.3 bits;  conditional E-value: 2e-07
  Pentapeptide_3   9 aadFrgatFsgaasFsnadFgsadFsgarFtgdvdFsga 47 
                     a d+rg++ ++  ++++ad+ +ad+ ga+ t +vd+sga
      KIR65375.1 113 A-DLRGVRLTDV-RMREADLAGADLTGATVT-GVDLSGA 148
                     4.7788888888.888888888888888888.8888776 PP

>> DNA_ligase_OB  NAD-dependent DNA ligase OB-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.5e-05      0.25      21      64 ..     133     180 ..     108     191 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.5e-05
                    XXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXX CS
  DNA_ligase_OB  21 AeLepvelaGttVsratLhnedei....erkdirigdtVvvekaGdvI 64 
                    A+L+  ++ G+  s a Lh  + +    +  d+   d  +v++aG  I
     KIR65375.1 133 ADLTGATVTGVDLSGAQLHGSRLLradlRGSDLSALDPTTVQRAGALI 180
                    7788888888888888888887766666899**************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1603.70
//
Query:       KIR65376.1  [L=319]
Description: hypothetical protein TK50_08055 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0063   16.0  11.8     0.0089   15.5  11.8    1.2  1  FAP       Fibronectin-attachment protein (FAP)
  ------ inclusion threshold ------
       0.29   11.4   8.3        7.8    6.8   0.1    2.6  2  YjbE      Exopolysaccharide production protein YjbE


Domain annotation for each model (and alignments):
>> FAP  Fibronectin-attachment protein (FAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5  11.8   9.9e-07    0.0089      11     134 ..      44     172 ..      35     179 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.9e-07
         FAP  11 rkglsktlaiaavagasava..lalPavanadpePaPppPstaeaapaeaaaapaPaapa..paPapadpnapeaaPapadPnapapppadPnapappa 105
                 r  ++++ +  av g  ++a  +al   a a   Pa    +  ea   ++a  p+ + p+   + +pad+++p   P    P ap+p+p  P ap+p a
  KIR65376.1  44 RLARARQRRRWAVEGLVVLAclVALGVYAAAPGGPAA--GPDDEAVLPAPAGRPSGGFPVvdRPGSPADAATPGLRPRQRTPTAPPPSPSSPVAPQPAA 140
                 4444444445555555443311233333333222332..222222222233334445555334667899999*************************99 PP

         FAP 106 vd...PnapepgrvdnavGGfsyvvPaGwkvs 134
                 v+    +a  p+ vd ++ G    v  G + +
  KIR65376.1 141 VHldvAQADVPADVDLTAAGTRDWVHWGLRGA 172
                 86222344456777776666555555555555 PP

>> YjbE  Exopolysaccharide production protein YjbE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1   0.00088       7.8       5      32 ..      56      83 ..      52      89 .. 0.87
   2 ?    5.6   4.2     0.002        18      37      64 ..     213     240 ..     207     244 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00088
        YjbE  5 vvllailvlaastsvsAApeaGeAAGaq 32
                v +l++l  +++  v+AA+  G AAG +
  KIR65376.1 56 VEGLVVLACLVALGVYAAAPGGPAAGPD 83
                67999999******************76 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.002
        YjbE  37 saGtseAvgigavaallGvalAasGGGd 64 
                 +  t++ +g++a +   G alA  GGG+
  KIR65376.1 213 TSSTATTTGVSACGVGSGFALAVDGGGE 240
                 556778889999999999******9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.34
# Mc/sec: 2771.55
//
Query:       KIR65377.1  [L=92]
Description: adhesin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.8e-06   25.9   0.0      1e-05   25.6   0.0    1.1  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   5.8e-10     1e-05       3      93 ..       2      83 ..       1      92 [] 0.88

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 5.8e-10
                 EEE-HHHHHHHHHHHHCTTEC....EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTE CS
  Fe-S_biosyn  3 itlteaAaeklkkllaedkke....lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgt 93
                 +t+t++A+  +++l a+++      lr++ d++            g+ +++lv+e+  + d+v++++g +++ +s+++ +l +++++d + d+++
   KIR65377.1  2 LTMTDNAVLVIRDLAAQEDVAegggLRIAADTD-----------AGSLTIELVPEP-VQGDQVVDHQGARIFLDSDAADLL-TDTSVDATVDDEG 83
                 8****************98878999****9999...........5899********.************************.7899998766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 750.12
//
Query:       KIR65378.1  [L=297]
Description: sulfotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-30  105.6   0.0    3.9e-30  105.2   0.0    1.1  1  Sulfotransfer_1  Sulfotransferase domain
    7.6e-05   23.2   1.0      0.039   14.3   0.3    3.1  2  Sulfotransfer_3  Sulfotransferase family
  ------ inclusion threshold ------
       0.37   10.8   5.8       0.27   11.2   0.9    2.7  2  Sensor           Putative sensor


Domain annotation for each model (and alignments):
>> Sulfotransfer_1  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   6.5e-34   3.9e-30       1     255 [.      25     277 ..      25     287 .. 0.87

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 6.5e-34
                      TTSEEEEESTTSSHHHHHHHHHHHHTTTCCHHHTSSGHCT-.HHHSCBTTHECCTSGCCGTTECCCHHHTTTEEHHHHHHHSTSS.EEEE...G CS
  Sulfotransfer_1   1 dddvlivtypKSGTtwlqellslitsegdfekaeepalfna.rdrspfLelydlyfpnslkppdhlrsyshvaekvvrlralesprllktHlpl 93 
                      d d++i+t +KSGTtw+q +  l        ++  p+l+ + +++sp+L++                 +++  e+++rl+a+ ++r++ktH+pl
       KIR65378.1  25 DGDIVISTRSKSGTTWMQMICAL-------LVFGTPDLPAPlSHLSPWLDWL----------------AEPRDEVYARLAAQRHRRFVKTHTPL 95 
                      579********************.......788889999999*********5................344589******************** PP

                      GGS.CHHHHTT-EEEEEE--HHHHHHHHHHHHHHBT..............TSTTT-S.-HHHHHHHHHT.......THSTTC-HHHHHHHHHHH CS
  Sulfotransfer_1  94 kllpkslldsnlKiiylvRnpkdvavSryhfsrslk..............klkepet.pfeeffdlfle.......grvvcgsyfdhvkswlkl 165
                      +++p   ld+++ +++++R p d+avS +h+s +l+                ++p t  +e+++ ++ +        + + g  + h+   + +
       KIR65378.1  96 DGVP---LDDRAHYVVVARHPLDMAVSLWHQSGNLDrarlaeltgrpapaGPPAPRTpLVESLRRWVDRevdpraeLDSLQGVLW-HLGDAWGR 185
                      ***5...69********************************99999999955666665666555555544445553666666666.7888999* PP

                      TTTTTEEEEEHHHHHHHHHHHHHHHHHHTT--..HHHHHHHHHHTSHHHHHTETTTSSTTSCTT...TTSTSSEE--TTGGGGTSBHHHHHHH CS
  Sulfotransfer_1 166 rkkgnvlflrYEdlkkdpakeikkiaeFlGiplteeelekivkhlsfenmksnpvsnksklskg...ekekffrkgqvgdWkneltveqaekl 255
                      r+++nv +++Y+dl +d+a++++ +a  lG+++ + +  ++v+ ++f+ m+++  +  ++ ++g   + + ffr+g +g+ ++ l+ + ++++
       KIR65378.1 186 RDRPNVTLVHYDDLVADLAGRMRALAGRLGVEVAQPRWPELVEAATFDRMRERADLLVPD-PAGvlkDRNAFFRRGRSGQGRELLDAATLARY 277
                      *********************************************************877.5669*999*********998888887776666 PP

>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0044        26       8      48 ..      34      75 ..      27     102 .. 0.65
   2 !   14.3   0.3   6.5e-06     0.039     166     215 ..     169     218 ..     101     220 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0044
                     TTSSHHHHHHHHHT....STTEE--S--.--TT.-SBHHHHHHHH CS
  Sulfotransfer_3  8 pRSGTTlLhrlLaa....hpdvripeetlfvaprllalleawskd 48
                      +SGTT+++ + a      pd ++p  +  + p  l++l++++++
       KIR65378.1 34 SKSGTTWMQMICALlvfgTPDLPAPLSH--LSP-WLDWLAEPRDE 75
                     69*******9999999998887777666..445.33344433333 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 6.5e-06
                      HHHHHHHHHHHHHHHHHS-TTSEEEEEHHHHHH-HHHHHHHHHHHHT--- CS
  Sulfotransfer_3 166 leewarayerllaararlppdrfldvrYedLvadpegtlrriyeflglpw 215
                      l+  +  +  l +a+ r +  ++  v+Y+dLvad  g +r++  +lg+++
       KIR65378.1 169 LDSLQGVLWHLGDAWGRRDRPNVTLVHYDDLVADLAGRMRALAGRLGVEV 218
                      44444443344455555677789************************996 PP

>> Sensor  Putative sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.9   4.6e-05      0.27      39      80 ..     117     161 ..     107     180 .. 0.74
   2 ?    0.7   0.3      0.08   4.8e+02      46      81 ..     203     238 ..     198     242 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.6e-05
      Sensor  39 alllarglaaveRrrarlllglpvprphrapep...pgllarlra 80 
                 a+ l++  ++++R+r+++l+g+p+p+ ++ap++   ++l++++ +
  KIR65378.1 117 AVSLWHQSGNLDRARLAELTGRPAPAGPPAPRTplvESLRRWVDR 161
                 677888999****************88766664566555555543 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.08
      Sensor  46 laaveRrrarlllglpvprph.rapeppgllarlral 81 
                 la   R++a + lg++v++p+ ++  ++ +++r+r++
  KIR65378.1 203 LAGRMRALAGR-LGVEVAQPRwPELVEAATFDRMRER 238
                 66777888886.5*****9976655547888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2134.08
//
Query:       KIR65379.1  [L=130]
Description: cupin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-19   68.8   0.5    3.9e-19   68.1   0.5    1.4  1  Cupin_2          Cupin domain
    1.5e-07   31.4   0.0    1.8e-07   31.1   0.0    1.1  1  AraC_binding     AraC-like ligand binding domain
    9.5e-07   28.5   0.1    1.2e-06   28.2   0.1    1.1  1  Cupin_1          Cupin
    4.3e-05   23.1   0.2    6.8e-05   22.5   0.2    1.3  1  Cupin_3          Protein of unknown function (DUF861)
    0.00017   21.8   0.0    0.00026   21.2   0.0    1.4  1  ARD              ARD/ARD' family
    0.00064   19.5   0.2    0.00069   19.4   0.2    1.1  1  Cupin_6          Cupin
     0.0057   16.5   0.0     0.0077   16.1   0.0    1.1  1  MannoseP_isomer  Mannose-6-phosphate isomerase
  ------ inclusion threshold ------
      0.083   13.3   0.0       0.13   12.7   0.0    1.3  1  JmjC             JmjC domain, hydroxylase
      0.085   13.2   0.0       0.12   12.8   0.0    1.4  1  Pirin_C          Pirin C-terminal cupin domain


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.5     2e-22   3.9e-19       2      71 .]      30      99 ..      29      99 .. 0.98

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 2e-22
                EEEEETTEEEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEEE CS
     Cupin_2  2 lvelppGesapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllvvy 71
                ++++ppG+++++++H+g d+++  ++G+ge +v ge+ e+ +Gd+v++pagt H+f+Ntg  p++l+ vy
  KIR65379.1 30 IMTIPPGGEIGEEVHEGIDQILTFVSGTGEARVAGEKKEVAQGDLVVVPAGTKHNFVNTGPNPLVLYTVY 99
                79****************************************************************9987 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   9.1e-11   1.8e-07      19      88 ..      42     112 ..      26     125 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 9.1e-11
                   ETT-.SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG-- CS
  AraC_binding  19 hvhd.eyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfegellerileds 88 
                    vh+   +i  +++Gtg  r++g+  ++ +Gdl+ +p g+ H +   + +++ ++++y ++e ++++ + +
    KIR65379.1  42 EVHEgIDQILTFVSGTGEARVAGEKKEVAQGDLVVVPAGTKHNFVNTGPNPLVLYTVYGPPEHADQAVHHT 112
                   555534489999*****************************************************998765 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1     6e-10   1.2e-06      36     126 ..      29     112 ..      19     121 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 6e-10
                 EEEEE.TTEEEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSSSEEEEEEEESSSTT-EEHSCE CS
     Cupin_1  36 arvdlepgglllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgdepavaivvfdtnnpgnqsvlaa 126
                 +   + pgg +   +h    +i+  + G+g + ++ ++       k++ +Gd++vvPag  h ++n+g +p+v + v++   ++ q v ++
  KIR65379.1  29 VIMTIPPGGEIGEEVHEGIDQILTFVSGTGEARVAGEK-------KEVAQGDLVVVPAGTKHNFVNTGPNPLVLYTVYGPPEHADQAVHHT 112
                 55556788888888888888899999999996666555.......68*********************************99999977665 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.2   3.4e-08   6.8e-05      23      61 ..      45      82 ..      23      88 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.4e-08
                ESS.EEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTEE CS
     Cupin_3 23 yee.dEfcyileGevkvtpeggetvelraGDlvvlpkgls 61
                    d++ ++++G  + ++  ge+ e+ +GDlvv+p+g++
  KIR65379.1 45 E-GiDQILTFVSGTGEARV-AGEKKEVAQGDLVVVPAGTK 82
                2.248888***********.******************96 PP

>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.3e-07   0.00026      92     143 ..      47      93 ..      38     107 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.3e-07
         ARD  92 deeirliveGtgyFdvrskdeawirvlvekGDLivlPagiyhrFtltednkv 143
                  ++i  +v+Gtg   v  + ++     v +GDL+v+Pag++h F  t  n +
  KIR65379.1  47 IDQILTFVSGTGEARVAGEKKE-----VAQGDLVVVPAGTKHNFVNTGPNPL 93 
                 5777788888888888777775.....67***************76655544 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.2   3.5e-07   0.00069      37      97 ..      51     108 ..      17     127 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.5e-07
     Cupin_6  37 hvvlrGscwlidpasgepvrLsagdvvllpggephvladspgtaplaviealgeasglgeg 97 
                 ++ ++G+   ++ +  e  ++++gd+v++p g++h +  ++g+ pl + +++g+++++ ++
  KIR65379.1  51 LTFVSGTGEARVAG--EKKEVAQGDLVVVPAGTKHNF-VNTGPNPLVLYTVYGPPEHADQA 108
                 45555555555445..6789*****************.77777899888888777665333 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.9e-06    0.0077      56     134 ..      19      97 ..      11     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.9e-06
  MannoseP_isomer  56 vldegeryqvkritvkPgeklslqkhhhraehWvvvkGtakvtvddevlllkenestyiplgaihrlenpGkiplelie 134
                      vl +ge+ q+ ++t+ Pg ++  + h    +    v+Gt + +v  e+ ++ + + + +p+g+ h + n G  pl l  
       KIR65379.1  19 VLWTGEHTQLVIMTIPPGGEIGEEVHEGIDQILTFVSGTGEARVAGEKKEVAQGDLVVVPAGTKHNFVNTGPNPLVLYT 97 
                      567788999999****************99999***************************************9998865 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.4e-05      0.13      78     107 ..      62      91 ..      41      95 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.4e-05
                 ---EEEEE-TT-EEEE-TT-EEEEEESSSE CS
        JmjC  78 ipvyrfvqkpgefVfvfpgayHsvfnlgfn 107
                 +   + +  +g++V+v++g+ H  +n+g n
  KIR65379.1  62 VAGEKKEVAQGDLVVVPAGTKHNFVNTGPN 91 
                 5556667889******************98 PP

>> Pirin_C  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.8e-05      0.12       4      54 ..      31      83 ..      28     120 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.8e-05
                EEE-TT-EEEEE--TT-EEEEEEEES-E..EESSTTEEE-TTEEEEE-SSSEE CS
     Pirin_C  4 ltleagaelelplpegleaavyvleGel..evggerseieeeqlavlgdgdsl 54
                +t+++g e+  ++ eg + ++  ++G++  +v ge++e+++++l+v+ +g++ 
  KIR65379.1 31 MTIPPGGEIGEEVHEGIDQILTFVSGTGeaRVAGEKKEVAQGDLVVVPAGTKH 83
                7999******************99766433899999**********9955443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 873.75
//
Query:       KIR65380.1  [L=594]
Description: glycoside hydrolase family 15 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-41  143.0   0.0    7.2e-36  123.9   0.0    2.1  2  Glyco_hydro_15  Glycosyl hydrolases family 15


Domain annotation for each model (and alignments):
>> Glyco_hydro_15  Glycosyl hydrolases family 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.9   0.0     4e-40   7.2e-36      22     347 ..     245     530 ..     233     536 .. 0.92
   2 !   17.1   0.0     1e-07    0.0018     402     448 .]     540     586 ..     532     586 .. 0.93

  Alignments for each domain:
  == domain 1  score: 123.9 bits;  conditional E-value: 4e-40
                     -TT-B-S-S-BSSS.........B--SEEHHHHHHHHHHHH.......HHHHHTTT-HCCHHHHHHHHHHHHHHCTS-BTTB-TTSCGGGG--EE CS
  Glyco_hydro_15  22 vtGlliASpstsdp.........DYrytWvRDsvyvilavwglgyrdedrakayeleqslvklmrglleamvrqagkvekfketqstkgLhakyf 107
                      +G++ A+ +ts+p         DYr+ W+RD++ ++ a+w ++  +e+ +   +  +s+ ++    +      +g+   +++     +Lh++++
      KIR65380.1 245 RSGAVAAALTTSLPerlggdrnyDYRFSWLRDFAATMRALWVAACPEEASRLFAWAARSIGRIGDAPVPVLFGLEGERDLSEH----DCLHLRGY 335
                     48***************************************888779***************999999999999999555553....4******* PP

                     -TTS-B--S-..-S--BTTHHHHHHHHHHHH.HCTTHCHCCCCHHHHTHHHHHHHHHHHTTS-EE-TTS--ECEEHH..HHHHHHHHHHHHHHHH CS
  Glyco_hydro_15 108 tktgstvvGddewghlQlDatslyllalaqm.tasglqiistldevafvqnlvdYieaayktpdfglWEenqgeselnassvgmakAlleaidea 201
                       + +++ G+d+w + QlD++++++ a++++  + g ++ ++l e+  v  l d ++ +++ pd g+WE++   +++  s+v  ++Al +a+++a
      KIR65380.1 336 ADSRPVRLGNDAWRQRQLDVPGEVISAVWRLhEQLGDTLADELAEM--VVGLADQVAVTWRLPDRGMWETRDADRHYLSSKVLCWVALNRAVALA 428
                     *******************************667789999999999..*********************************************** PP

                     HHCT-HHHHCCHHHHHHHHHHHHHSTTT..GGGEETTCCECECSCH.....HHHTTS--S-BCHHHHHHHHCS-TTS-TT-TT-TTTSHHHHHHH CS
  Glyco_hydro_15 202 dlfgakgdaqlvektkdeilnklqgkygckrgfwplfntylildgsfaedkeqvqeyrealdasllllpelyfvpaddvdeeyqnpqsprllaqs 296
                      ++g ++d + ++ t+dei  ++      + g  +  + y+ ++gs             +ldas lllp + f+ a d          pr+ a++
      KIR65380.1 429 PQLGGRADPRRWAATRDEIRATV-----LREGWNERVGAYTGAFGS------------PELDASALLLPLVRFADATD----------PRMRATI 496
                     ***********************.....777888888899999999............********************..........******* PP

                     HHHHHHHHHHSGGGTT-STTS--SBTT--CGSSSBSCT--BHHHHHHHHHH CS
  Glyco_hydro_15 297 lyildsllsegflavgeldplvrRysedvkpdklglsGrpyylctlwtvet 347
                      +++++l +          +lvrR+s+d            ++lc++w ve 
      KIR65380.1 497 EAVERELGAGN--------GLVRRWSTDPA---------GFLLCSFWLVEC 530
                     ******98743........35999999975.........488888887775 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1e-07
                     HHHHHHHHHHHS-TTS---SEE-TTT--EESSTT-HHHHHHHHHHHH CS
  Glyco_hydro_15 402 ladliveaveednslgvLteevdvylgeliraqpllfsealllrigl 448
                      ++l+ +  + +n+ g+L e++d  +g  ++++p++ s++ l+++++
      KIR65380.1 540 ARRLFEQLLGHANDVGLLPEQIDPGTGAHLGNTPQALSHIGLVNAAW 586
                     5789999999*********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4469.17
//
Query:       KIR65381.1  [L=396]
Description: threonine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-61  206.1   4.9    8.9e-61  205.9   4.9    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
       0.28   11.8   0.8        1.7    9.3   0.1    2.5  3  Trm112p   Trm112p-like protein


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.9   4.9   9.9e-65   8.9e-61       2     294 .]      72     378 ..      71     378 .. 0.93

  Alignments for each domain:
  == domain 1  score: 205.9 bits;  conditional E-value: 9.9e-65
                 GGCSSS--EEEECCTCCCCCCE.EEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHH CS
        PALP   2 tlgigpTPlvrlprlskelgvp.lflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrl 99 
                 tlg+g TPl+r+p+  +++g+p l +K+E+l+ptgSfK+Rga+  ++r++e  g ++++  ++GN+g+a A +aa++Gl +tiv+p da++  ++   +
  KIR65381.1  72 TLGEGWTPLLRAPAYGARIGIPdLIVKDEGLTPTGSFKARGAAVGVSRAREL-GVRRIAMPTNGNAGAAWATYAARAGLASTIVMPLDAPAICRREVLA 169
                 7899************************************************.********************************************** PP

                 TT-EEEEECCHHHHHHHHHHHHHHH.STTCEE--TTTSHHHHHHHHTHHHHHHHHTT.TTEEEEEEE-SSSHHHHHHHHHHHH....HSTT...-EEEE CS
        PALP 100 lGaevvevggdydeavaaaaelaae.gegaylvsqfdnptviegygtiglEileqlg.gkpdavvvpvGgGgliaGiaaglke....rrpd...vrvig 189
                  G ++++v+g   +a +++a+l a  g+ ++ + +   p++ eg +t+g+Ei+eqlg ++pd++v p+GgG  + Gi ++++e    ++ +   +r+++
  KIR65381.1 170 AGGDLRLVDGLISDAGRHVAALVAAaGGAVFDAGTLREPYRLEGKKTMGYEIVEQLGwQVPDVIVYPTGGGVGLIGIHKAMQElhglGWITdrpPRLVA 268
                 ******************8877777244444444444**********************************************88873333677***** PP

                 EEECTTCGGTTCCS..S.SS..B...SSS.CCSTCS..CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHCCT CS
        PALP 190 vepegsdalarslragrrvtvpvs..dtiadglavg..spselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal.klreagelk 283
                 v+++g++++ r+++ag+    p +  +t a g+ v+     el +++l+++ +++++v+d+e l+ +r++  +eg++++p +aa l a+ +lre g ++
  KIR65381.1 269 VQSTGCAPIVRAFAAGEDRARPWAdaRTVAYGITVPapLGDELILAALRASAGTAIAVDDAELLADLRHFGADEGLLLCPEGAACLTAArHLREGGWIR 367
                 *************9999888888888**********766677888888*************************************************** PP

                 TCEEEEEEE-B CS
        PALP 284 egdrvvviltg 294
                 +g+rvvv+ tg
  KIR65381.1 368 AGERVVVLNTG 378
                 ********998 PP

>> Trm112p  Trm112p-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00019       1.7      54      64 ..       6      16 ..       4      19 .. 0.89
   2 ?   -1.4   0.1      0.41   3.6e+03      10      31 ..      24      49 ..      23      63 .. 0.76
   3 ?   -2.0   0.0      0.61   5.5e+03      42      58 ..     337     349 ..     305     350 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00019
                EEETTTTEEEE CS
     Trm112p 54 LvCpncgraYp 64
                L Cp+cgraYp
  KIR65381.1  6 LECPRCGRAYP 16
                99********9 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.41
                -TTTHHC-....-HHHHHHHHH.TT-- CS
     Trm112p 10 CpackgpL....dwealvevaa.lgln 31
                C  c +pL    d++a+  +++ ++++
  KIR65381.1 24 CA-CGSPLlaryDLAAVAAAVTpERFA 49
                88.999998888888887777766555 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.61
                 CHHTTEECCCCEEEETT CS
     Trm112p  42 ellleldieegeLvCpn 58 
                 +    +  +eg L Cp+
  KIR65381.1 337 H----FGADEGLLLCPE 349
                 5....777899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3020.11
//
Query:       KIR65382.1  [L=359]
Description: ATP-dependent DNA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-34  118.3   0.4    2.3e-34  117.8   0.4    1.2  1  LigD_N          DNA polymerase Ligase (LigD)
    2.5e-13   50.2   0.0    6.7e-13   48.8   0.0    1.7  1  DNA_ligase_A_M  ATP dependent DNA ligase domain


Domain annotation for each model (and alignments):
>> LigD_N  DNA polymerase Ligase (LigD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.4   2.6e-38   2.3e-34       1     104 [.      43     141 ..      43     142 .. 0.99

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 2.6e-38
                 EEEESSSEEEEEEEEETTEEEEEEETT---SSTTSEEEEEEEEEE-GGGGGEEEEE-TTSTT-EEEEEEEEEEEEE..-HHHHHHHTEEEEEEECSSSE CS
      LigD_N   1 qeHdaprlHYDlrLeidevlsswavpkglpedpnskrlAvetedhpleyadfegliekgeygaGsvliwDtGtyeveeklaealkkrkiklrLhGeklk 99 
                 q+H+a+rlH+DlrLe+++vl swavp+glp +p +++lAv+tedhp+ey+df+g+i++geyg+G+++i+D+Gty+      e+++++++ + L+G++ +
  KIR65382.1  43 QQHHARRLHWDLRLEHEGVLASWAVPRGLPREPGHSHLAVHTEDHPMEYLDFHGEIPAGEYGGGKMIIHDAGTYRS-----EKWRDDEVVVVLDGRRTS 136
                 89*************************************************************************9.....8***************** PP

                 EEEEE CS
      LigD_N 100 gkyvl 104
                 g+yvl
  KIR65382.1 137 GRYVL 141
                 ***98 PP

>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   7.4e-17   6.7e-13      19     201 ..     183     346 ..     165     348 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 7.4e-17
                     TSEEEEEEEESSEEEEEEEETTEEEEEETTS-B-GGGCHHHHHHHHHHBSTTESEEEEEEEEEEEETTTTCBEHHHHHCHHHHCHCCTHHHHHHS CS
  DNA_ligase_A_M  19 ekafivEiKyDGeRaqvhkegdkvklfSRrlkditaakpelvkalkeafkkdeksvilDGElvavdketgeilpfqklasrkkkkkkveeklkea 113
                     ++++ +E  +DG+Ra    +g++ +l   ++ d+t+a+p l + ++e+++    +++lDG lv +d+  g+++p      r +++          
      KIR65382.1 183 AADWGYEPRWDGVRATAYVSGGRLRLSDDSGGDVTGAYPWLRELAEELAPT---EAVLDGVLVDIDRR-GRVRPARPGGGR-RSDP--------- 263
                     567889*********************************997777666665...69*******99887.999999998888.3333......... PP

                     EEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BTTTEEE--EEEESSHHHHHHHHHHHHHTTECEEEEEETT-CC-TTCEEEEEE CS
  DNA_ligase_A_M 114 elclfvFDiLyldgesltdeplkeRrklLeeilkesedrvelaeslevkdveeleelleeaiseglEGlvvKnpdskYepgkrsknwl 201
                       ++++FD+L+l+g +  d+p+  Rr+lL  +      +++   +  ++ ve     l+ a ++gl G+v+K  ds Yepg+rs++wl
      KIR65382.1 264 AGQYLLFDLLWLEGAPSADLPYARRRELLDGLA-LAGAHWQTPPWFPGTGVEA----LRAAREQGLPGVVAKRLDSAYEPGRRSRRWL 346
                     3469***************************99.8999************875....5678999***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2595.84
//
Query:       KIR65383.1  [L=261]
Description: aldo/keto reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-41  142.8   0.0    3.2e-29  102.1   0.0    2.0  2  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.0   1.8e-33   3.2e-29       2     171 ..      20     175 ..      19     197 .. 0.86
   2 !   39.6   0.0   1.9e-14   3.5e-10     227     292 ..     196     259 ..     172     260 .. 0.90

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 1.8e-33
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLg 98 
                   lg+Gtwq ++      e   +++ +al+aG++++DtA +Y    +e ++G+a+ +s+ +re+v+++tK+      ++++  +   re +e+sl+ Lg
    KIR65383.1  20 LGFGTWQATG------EAGHAAVLAALDAGYRHVDTATMY---GNEAEVGRAVRDSGLRREDVFVTTKL------PPDRVGR--ERETIEASLRALG 99 
                   89****9998......57778899****************...9*************************......5555544..4799********* PP

                   -S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT...-HHH CS
  Aldo_ket_red  99 tdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynll...rele 171
                   +d+vDl+l+H+p ++ ++   v++ l   ++eG+ ra+GvSn+  +ql+++ +  +  ++++q+++ +    r+++
    KIR65383.1 100 LDHVDLWLIHWPPSAASDSIPVWRELLAARDEGLTRAVGVSNYGTAQLDELIQATGEVPAVNQIRWGPAlydRRRH 175
                   ***************************************************6666666789******996642222 PP

  == domain 2  score: 39.6 bits;  conditional E-value: 1.9e-14
                   HHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 227 daaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                   + ++ l ++a+ h+vs+aq++lr+ +  + +++vip++ ++e++++n+d + + l++ee++ +d+l
    KIR65383.1 196 LSDPVLTRIAAAHDVSPAQVVLRWHV--DHGIVVIPKSVTPERIRTNADIWGFSLTAEEMRDIDAL 259
                   55678899******************..***********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 1613.70
//
Query:       KIR65384.1  [L=372]
Description: glycosyl hydrolase family 5 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-67  225.3   3.1    8.1e-67  225.3   3.1    1.7  2  Glyco_hydro_12  Glycosyl hydrolase family 12
    2.7e-33  114.3  11.2    2.7e-33  114.3  11.2    2.8  3  CBM_2           Cellulose binding domain
  ------ inclusion threshold ------
      0.049   13.9   1.0      0.049   13.9   1.0    2.3  3  DUF11           Domain of unknown function DUF11
        0.2   12.0   3.4        0.2   12.0   1.1    2.2  2  CBM49           Carbohydrate binding domain CBM49


Domain annotation for each model (and alignments):
>> Glyco_hydro_12  Glycosyl hydrolase family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.3   3.1   1.8e-70   8.1e-67       2     214 .]      46     251 ..      45     251 .. 0.99
   2 ?   -1.5   0.2      0.46   2.1e+03       4      35 ..     301     334 ..     291     364 .. 0.54

  Alignments for each domain:
  == domain 1  score: 225.3 bits;  conditional E-value: 1.8e-70
                     EEEEEE--TTEEEEEEEEEEEE-SSEEEEEEEEEEEEESSGB--EEEEE-BGGGTB--TT----EEGGGEEEEEEEEEEEEE-TT--EEEEEEEE CS
  Glyco_hydro_12   2 pysvennlWgskegsgsvavkvdgekitssgasahtswkekgypevygGeksvksysnsgvalpvkvssvssiptevsfsiddtnvkanvaydlf 96 
                     +y+v+nn+Wg++++++++a + +g++it+ ++s +t++++ +yp+++ G++  ++++++g++lpv+vs++ss+p+++++ ++ ++++ n++yd++
      KIR65384.1  46 KYVVQNNRWGTTAQQCINA-TSTGFEITTLNGSSPTNGAPTAYPSIFVGCH--YTNCSPGTNLPVQVSQISSAPSSINYRYVSGAIY-NASYDIW 136
                     7******************.899****************************..**********************************.******* PP

                     EESSTT-S--TT-EEEEEEEE.EES---SSEEEEEEEETTEEEEEEE.EESSSEEEEEEESS--EEEEEEHHHHHHHHH-SS---GGGSEE-EEE CS
  Glyco_hydro_12  97 laaeknqvtsigdvElmiWlarygniqPiGekietavvgGetWelwlGaeaeqdvlsFvakspikgysfDvkdFldaltsargldaedlylislq 191
                     l++ +++ ++++++E+miWl+r g+iqPiG++++ a++ G+ We+w G +++++v+s+va+s+i + sfDv +F++  t +rg  ++++yl+s+q
      KIR65384.1 137 LDPSPKR-DGVNQMEIMIWLNRQGPIQPIGSPVGNANIAGRNWEVWRGNNGGNNVISYVASSAIPSLSFDVLHFIND-TRNRGAITNSWYLTSIQ 229
                     ******9.*********************************************************************.9**************** PP

                     EE--B..--TT-EEEEEEEEEEE CS
  Glyco_hydro_12 192 iGtEpftgspetlkvenfsasve 214
                     +G+Ep++g+++ l+v nfs sv+
      KIR65384.1 230 AGFEPWQGGAG-LAVTNFSQSVN 251
                     ***********.*********97 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.46
                     EEEE--TTEEEEEEEE..EEEE-SSEEEEEEEEE CS
  Glyco_hydro_12   4 svennlWgskegsgsv..avkvdgekitssgasa 35 
                     +++ nl g ++ +gs   +v + g  +t  + s 
      KIR65384.1 301 TLNYNLPGGQQITGSWnaTVSQSGSAVTARNISH 334
                     5555555555555553112333344444433333 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   1.3     0.039   1.7e+02      40      91 ..      30      79 ..      16      86 .. 0.72
   2 ?   -2.4   0.1       1.4   6.2e+03      11      11 ..     235     235 ..     213     255 .. 0.54
   3 !  114.3  11.2   6.1e-37   2.7e-33       1     101 []     270     369 ..     270     369 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.039
                TTEEEEEEESEEEEEETTEEEEEE-STT-EE-T.TEEEEEEEEEEE-SS---- CS
       CBM_2 40 agqrvtqlWnatvsqsGnsvtatnvswNgtiap.GgsasfGfqgsktgsnsap 91
                a +++ +++ +tv   G +++++n  w +t +   +++s Gf++++ + + +p
  KIR65384.1 30 ADTQICEQFGSTVI--GGKYVVQNNRWGTTAQQcINATSTGFEITTLNGS-SP 79
                55666666666665..669********99998834677899998765543.33 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
                 - CS
       CBM_2  11 W 11 
                 W
  KIR65384.1 235 W 235
                 3 PP

  == domain 3  score: 114.3 bits;  conditional E-value: 6.1e-37
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTE CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGa 99 
                 ++++y+ + +W++Gfta v+++N+g++++ngWt++++lp gq++t +WnatvsqsG++vta+n+s+Ngt+apGg+a+fG+qg+ +g +s+p+sft+nG 
  KIR65384.1 270 CAVKYTAN-SWNNGFTADVQITNTGTATLNGWTLNYNLPGGQQITGSWNATVSQSGSAVTARNISHNGTLAPGGTATFGYQGTLSGAYSSPSSFTLNGM 367
                 67888876.9***************************************************************************************** PP

                 E- CS
       CBM_2 100 aC 101
                 +C
  KIR65384.1 368 TC 369
                 *9 PP

>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         3   1.3e+04      23      41 ..      97     117 ..      96     135 .. 0.54
   2 ?   -2.2   0.1       1.1   5.2e+03      24      51 ..     251     275 ..     241     287 .. 0.59
   3 ?   13.9   1.0   1.1e-05     0.049      20      75 ..     287     349 ..     272     359 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3
       DUF11  23 tNtgpasangvvvtDtl..Pa 41 
                 tN +p +   v+v+ +   P+
  KIR65384.1  97 TNCSPGTNLPVQVSQISsaPS 117
                 566666666666655443333 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
       DUF11  24 NtgpasangvvvtDtlPaglayvsvsas 51 
                 Ntg+++    + + t+P+g+ +  v+ +
  KIR65384.1 251 NTGGTPP---TTNPTPPPGTGACAVKYT 275
                 4444444...344455666655555544 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 1.1e-05
       DUF11  20 ltvtNtgpasangvvvtDtlP.......aglayvsvsasqgtasaltsv..gsLeagesatlsft 75 
                 +  tNtg+a++ng +++  lP       +  a+vs s s  ta+    +  g+L++g++at+ ++
  KIR65384.1 287 VQITNTGTATLNGWTLNYNLPggqqitgSWNATVSQSGSAVTARNI--ShnGTLAPGGTATFGYQ 349
                 5679*****************7777754223333333332244444..156*********98765 PP

>> CBM49  Carbohydrate binding domain CBM49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.2   5.5e+03      33      50 ..     168     182 ..     148     201 .. 0.65
   2 ?   12.0   1.1   4.4e-05       0.2       9      78 ..     277     348 ..     272     349 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
       CBM49  33 iksltlkienlapgeiWg 50 
                 + +++++  n++   +W 
  KIR65384.1 168 VGNANIAGRNWE---VWR 182
                 455555555552...443 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4.4e-05
       CBM49   9 ssWkdngktyyqvevtitNnssktiksltlkienla....pgeiWgvek.vskntyslp..swlsslsaGeslsFgY 78 
                 +sW++  +    ++v itN++++t++  tl+ + l      +  W+ +  +s+  ++    s + +l +G + +FgY
  KIR65384.1 277 NSWNNGFT----ADVQITNTGTATLNGWTLNYN-LPggqqITGSWNATVsQSGSAVTARniSHNGTLAPGGTATFGY 348
                 56665544....89****************998.6555567889**9995555555544114555***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2381.42
//
Query:       KIR65385.1  [L=368]
Description: FAD-binding monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-20   73.1   0.4    3.9e-19   69.1   0.4    2.1  1  FAD_binding_3   FAD binding domain
    4.6e-05   22.8   0.2      0.028   13.7   0.2    2.3  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00022   20.9   3.5     0.0034   17.0   0.2    2.3  2  DAO             FAD dependent oxidoreductase
    0.00043   20.5   0.2      0.001   19.3   0.2    1.6  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.014   14.2   0.1        6.2    5.6   0.1    2.8  3  Trp_halogenase  Tryptophan halogenase
      0.016   15.8   0.1      0.036   14.6   0.1    1.6  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      0.017   14.4   0.0        1.4    8.1   0.0    2.2  2  Amino_oxidase   Flavin containing amine oxidoreductase
      0.045   12.8   0.0      0.079   12.0   0.0    1.3  1  SE              Squalene epoxidase
      0.087   11.9   4.6       0.97    8.4   0.2    2.5  3  Lycopene_cycl   Lycopene cyclase protein
       0.13   11.5   0.0        0.9    8.7   0.1    1.9  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
       0.14   11.5   0.3       0.26   10.5   0.3    1.4  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.4   2.4e-22   3.9e-19       4     348 ..       8     330 ..       6     331 .. 0.77

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 2.4e-22
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHH.CHHCST- CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradle.lessper 98 
                    +l+VGaG aGl  a+ L++ G r  + e+    +    + +l     + lr l l+  ++  g+    + + l +   + p  ++dl  l +   +
     KIR65385.1   8 ILVVGAGIAGLAVARALRRVGLRPDVTERLPASALVDTGLYLPGNAARALRGLDLDGPVRPLGQIIRRQCF-LDAA--GDPLCEVDLGsLWADVGE 100
                    79*************************************************************76665433.3333..346777777755589999 PP

                    CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGG.EEEEEEEEEEEEEEEEEE CS
  FAD_binding_3  99 vtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgie.fegeetvyeagvldvlfd 193
                      ++p +el r+L+     +g +vr++ ev+ +e     v  ++ d +t      + + ++GaDG rStvr+ + +   + + +   +   +v+  
     KIR65385.1 101 CRALPWSELHRVLLTG---AGGEVRHGVEVREVEPLPAAVGITFADGTT-----AEYDLVIGADGPRSTVRALAALGgAPRPAGH--VVYRGVVR- 185
                    99************99...89**********888888888888777764.....45599************99887733333333..33334443. PP

                    C-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEE....EEEEEEEEEEEEEE.ESSSEET CS
  FAD_binding_3 194 adlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivgektldv....eieevsawtvaqrv.aekyrkg 284
                       +  v++++++l ++ + + v+Pl     r  +++ a++ +      + +++ ++rl e++g ++ +v    +  e  ++++ + v   ++++g
     KIR65385.1 186 GGPR--VDEWTALLGQQAG-FLVVPLGA--GR--LYCYADE-V----GTVAPADPITRLTELFGAYAGPVpevlDALEQVHVGITEEVeLGRWSRG 269
                    3333..4456666666665.599***99..22..3344443.3....34455555666666666666555421144445555555555378***** PP

                    TEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 285 rvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvdf 348
                    rv+l+GDAaH++ Pt  qG  +a++Dav La  L    +    ee L +Ye++rr++ q v d+
     KIR65385.1 270 RVLLVGDAAHATAPTLSQGTAMALEDAVVLAESLTTTDT---VEEALVAYESRRRPRTQWVRDR 330
                    **********************************98777...99*************9988766 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   1.7e-05     0.028       2      28 ..       7      33 ..       6      54 .. 0.83
   2 !    6.7   0.0    0.0023       3.7     197     249 ..     118     169 ..     106     181 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
                 SEEEE--SHHHHHHHHHHHHHTS-EEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtl 28
                 +++v+G+G+AGla+a+ l++ g++  +
   KIR65385.1  7 RILVVGAGIAGLAVARALRRVGLRPDV 33
                 689****************98877555 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0023
                  TEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 197 GvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklg 249
                  G ev++g +v e+++ +  +  +  dg++ ++dlv+ a G r   + l  +lg
   KIR65385.1 118 GGEVRHGVEVREVEPLPAAVGITFADGTTAEYDLVIGADGPRSTVRAL-AALG 169
                  668999***********9888*******************99988877.5555 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   2.1e-06    0.0034       2      23 ..       8      33 ..       7      65 .. 0.80
   2 !    5.0   0.3    0.0095        16     157     225 ..     115     178 ..      95     292 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.1e-06
                EEEECTSHHHHHHHHHHHHT.T....E CS
         DAO  2 vviiGGGiiGlstAyeLarr.g....V 23
                ++++G+Gi+Gl++A++L rr g    V
  KIR65385.1  8 ILVVGAGIAGLAVARAL-RRvGlrpdV 33
                99***************.554555564 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0095
                 HHTT-EEEESECEEEEEE.EETCEEEEE..EECTEEEEEEEEEEE--GGGHH.HH.HTTCTTTSEEEEEEEEEE CS
         DAO 157 ealGveilegtevtglee.edgkvwgve..rttpgendaadavVnaaGawsd.ll.gllkeldlpispvrgqvl 225
                   +G+e++ g ev+++e  +   ++g+   +   g++ ++d v+ a G+ s+  + + l+    p +p+   ++
  KIR65385.1 115 TGAGGEVRHGVEVREVEPlP--AAVGITfaD---GTTAEYDLVIGADGPRSTvRAlAALGGA--P-RPAG--HV 178
                 5679************6633..456663332...66545688********987443344323..3.4432..22 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   6.2e-07     0.001       1      27 [.      10      36 ..      10      42 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 6.2e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-S CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllek 27
                   +vGaG++Gl+ A++L++ g++ ++ e+
     KIR65385.1 10 VVGAGIAGLAVARALRRVGLRPDVTER 36
                   8****************9999888776 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0038       6.2       1      22 [.       7      28 ..       7      35 .. 0.88
   2 ?    0.2   0.0      0.16   2.6e+02     189     213 ..     138     162 ..     122     174 .. 0.86
   3 ?    4.4   0.0    0.0084        14     314     376 ..     266     329 ..     247     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0038
                    EEEEE--SHHHHHHHHHHHHHT CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakal 22
                    +i++vG+G+aG  +A al++++
      KIR65385.1  7 RILVVGAGIAGLAVARALRRVG 28
                    69*****************986 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.16
                     EEEETTS-EEE-SEEEE-SGGG-II CS
  Trp_halogenase 189 slrledgreveadlfiDcsGfrgll 213
                     +++ +dg++ e+dl+i + G r+ +
      KIR65385.1 138 GITFADGTTAEYDLVIGADGPRSTV 162
                     57889***************99976 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0084
                     EETT.EEE-CCCTEE--CCCS-HHHHHHHHHHHHHHT--BTT--HHHHHHHHHHHHHHHHHHHH CS
  Trp_halogenase 314 wvkn.vvalGlasgfvePlestsihliqaalrrLlallpdksdepaaiaefnrevarelervrd 376
                     w+++ v+++G+a+ +  P  s++ +++ +++  L++ l ++   + a+  ++++ +   + vrd
      KIR65385.1 266 WSRGrVLLVGDAAHATAPTLSQGTAMALEDAVVLAESLTTTDTVEEALVAYESRRRPRTQWVRD 329
                     544427889********************************999999999*9998887777776 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   2.2e-05     0.036       1      32 [.       7      38 ..       7      45 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.2e-05
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversd 32
                +++vvG+G  gl +A al++ g +  v er +
  KIR65385.1  7 RILVVGAGIAGLAVARALRRVGLRPDVTERLP 38
                79*********************999999976 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.015        24       1      21 [.      15      35 ..      15      38 .. 0.91
   2 ?    8.1   0.0   0.00085       1.4     221     257 ..     117     153 ..     102     159 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.015
                   HHHHHHHHHHHHTTEEEEEEE CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlE 21
                   +aGLa+Ar L + G++  v E
     KIR65385.1 15 IAGLAVARALRRVGLRPDVTE 35
                   8*************8888888 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00085
                    TTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEE CS
  Amino_oxidase 221 rgldirlntrVkeikregdgvtvtledgevveaDaVv 257
                     g+++r + +V+e++  +  v++t+ dg++ e+D V+
     KIR65385.1 117 AGGEVRHGVEVREVEPLPAAVGITFADGTTAEYDLVI 153
                    699*********************************9 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.8e-05     0.079     132     173 ..     271     311 ..     246     325 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.8e-05
          SE 132 lillGDalnmRHPltggGmtvalnDivllskllkpledlsde 173
                 ++l+GDa     P  + G ++al+D+v+l++ l+ + d  +e
  KIR65385.1 271 VLLVGDAAHATAPTLSQGTAMALEDAVVLAESLTTT-DTVEE 311
                 7899****************************9988.44333 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2    0.0006      0.97       2      25 ..       8      29 ..       7      45 .. 0.81
   2 ?   -2.6   0.0       1.3   2.1e+03     101     144 ..     119     161 ..     107     171 .. 0.73
   3 ?    4.8   0.2    0.0072        12     257     317 ..     270     335 ..     251     344 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0006
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpgl 25
                   ++v+GaG Agl++A  l   + gl
     KIR65385.1  8 ILVVGAGIAGLAVARAL--RRVGL 29
                   78*************99..44444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
  Lycopene_cycl 101 gvklleakvesveeeeageslvvleggrkirarlvvdarglasl 144
                    g  ++   v +ve+ +a  + ++ ++g + +  lv+ a g  s 
     KIR65385.1 119 GEVRHGVEVREVEPLPA-AVGITFADGTTAEYDLVIGADGPRST 161
                    45566667888888888.89999999999999999999994443 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0072
  Lycopene_cycl 257 kvlaiGaaaglvhPaTGYsvarslaeapllasaiaaalres.....slsarawatlwprerkrqre 317
                    +vl +G aa ++ P+     a +l  a +la+++  +   +       s+r ++t+w r+r r+r+
     KIR65385.1 270 RVLLVGDAAHATAPTLSQGTAMALEDAVVLAESLTTTDTVEealvaYESRRRPRTQWVRDRTRDRN 335
                    588899999999999888888888888877777776665556677788899999999999999986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00055       0.9       1      22 [.       9      30 ..       9      42 .. 0.86
   2 ?    0.3   0.0      0.21   3.4e+02     229     278 ..     121     169 ..     106     181 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00055
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagle 22
                 +++GaG aGla+a +l+++gl 
   KIR65385.1  9 LVVGAGIAGLAVARALRRVGLR 30
                 69******************94 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.21
  Pyr_redox_3 229 vlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkksl 278
                  v    ev+e++     + ++++dg++  ++d v+ a G +++++ l++ +
   KIR65385.1 121 VRHGVEVREVEPLPAAVGITFADGTT-AEYDLVIGADGPRSTVRALAALG 169
                  566779999**************976.66899999999999999998754 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   0.00016      0.26      27      53 ..       4      30 ..       1      41 [. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
                 ---EEEEESTSHHHHHHHHHHHHTT-E CS
  AlaDh_PNT_C 27 epakvlviGgGvaGlqAiatakglgak 53
                 +p ++lv+G+G+aGl+ +++ +++g +
   KIR65385.1  4 SPLRILVVGAGIAGLAVARALRRVGLR 30
                 5789************99999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2324.87
//
Query:       KIR65386.1  [L=585]
Description: cytochrome C oxidase subunit I [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     4e-156  520.2  68.2   4.5e-156  520.0  68.2    1.0  1  COX1             Cytochrome C and Quinol oxidase polypeptide 


Domain annotation for each model (and alignments):
>> COX1  Cytochrome C and Quinol oxidase polypeptide I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  520.0  68.2  2.5e-160  4.5e-156       2     432 .]      37     480 ..      36     480 .. 0.99

  Alignments for each domain:
  == domain 1  score: 520.0 bits;  conditional E-value: 2.5e-160
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCTCT.....-HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTSS-S-HHHHHHHHHHHHHHHHHHHH CS
        COX1   2 igllylilalvlllvggllgllirlqlafp.....dletynqlrtlHgnlmiflfatpfilgfgnylvplllgardlafprlnalsfwlvvlgvvllll 95 
                 ig++y+++a++++++ggl++l++r++la p     ++e+ynql+t+Hg++m+++fatp++++f+ny+vpl++ga+d++fprln++++wl+++g++++ +
  KIR65386.1  37 IGIMYMVTAFAFFMIGGLMALIMRAELARPglqflSPEQYNQLFTMHGTIMLLFFATPIVFAFANYVVPLQIGAPDVSFPRLNSFAYWLYLFGGTMATA 135
                 99**************************998888888************************************************************** PP

                 HHH...CSS-STTTTTTTC.........SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCGS-HHHHHHHHHHHHHHHHCHHHHHHHHHCHHH CS
        COX1  96 sll...gaattgwteYapls........evdlwllglllvvvssllgainfivtilkrrapgmtvaklplfvwavlatailillalpvlalalllllld 183
                 +++   gaa+ gwt+Y+pls        + ++w++gl++++++++lga+n+i+til+ rapgmt++++p+f+w++l+t++l++l++p la+al  l +d
  KIR65386.1 136 GFItpgGAADFGWTAYTPLStaehspgvGANMWVVGLAISGLGTILGAVNLITTILTLRAPGMTMFRMPIFTWNMLVTSLLAILIFPLLAAALFALAAD 234
                 **999888******************************************************************************************* PP

                 HHCT.-SSSC..E-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHCCCCGGGGTTTSSS-HHHHHHHHHHHHHTH CS
        COX1 184 rslg.kffsp..gdplldqhlfWffgHpeVyililpalgivyyilpkfagrplfsyklsvlafililflsflvwaHHlfttglpewlkalgsvfsllia 279
                 r lg ++++p  g p+l+qhlfWffgHpeVyi+ lp++gi+ +++p+f+++p+f+yk +v+a+i+i+ ls+ vwaHH+f tg   +l  ++s++s+lia
  KIR65386.1 235 RLLGaHVYDPatGGPMLWQHLFWFFGHPEVYIIALPFFGIITEVIPVFSRKPIFGYKGLVAATIAIAALSMSVWAHHMFSTGQ--VLLPFFSFLSYLIA 331
                 ********9999*********************************************************************87..9************* PP

                 HHHHHCCCHHHHCCTTS-CHCHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSB--HHHHHHH CS
        COX1 280 vPsglkvfnwlatlwrgsirfktpmlfflgfavlfiigGltGvllalpsvnyvvhntywvvaHfHlvllgavvfllfaaiyyllpkltgrmlserlakl 378
                 vP+g+k+fnw++t+wrg+i+f+tpmlf++gf+v+f++gGltGv+la+p+++++vh++y+vvaHfH+vl+g++vf++fa+iy+++pk++grml+erl+k+
  KIR65386.1 332 VPTGMKFFNWIGTMWRGQITFETPMLFAIGFLVTFLFGGLTGVILASPPLDFHVHDSYFVVAHFHYVLFGTIVFAVFAGIYFWFPKMFGRMLDERLGKI 430
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTTHBSSSST--SCCCCHHHCHHHHHHHHHHHHH CS
        COX1 379 hfwllfiGlvlmflpmhilGllgmprraadyksfletvpelqplnvlrtiggvl 432
                 hfwl++iG++ +fl +h+lG  gmprr+ dy +    ++ +++ln+++tig+++
  KIR65386.1 431 HFWLTMIGFHTTFLVQHWLGNEGMPRRYVDYAP----QDGFTTLNMISTIGAFI 480
                 *******************************65....89*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3782.26
//
Query:       KIR65387.1  [L=193]
Description: amidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-36  124.6   0.1    5.3e-36  124.4   0.1    1.0  1  Isochorismatase  Isochorismatase family
  ------ inclusion threshold ------
      0.043   12.0   0.0      0.055   11.6   0.0    1.1  1  Flavi_NS5        Flavivirus RNA-directed RNA polymerase


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   0.1   5.9e-40   5.3e-36       2     173 ..       4     187 ..       3     189 .. 0.95

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 5.9e-40
  Isochorismatase   2 alvviDmqndfveegvkeseeisavveninkllkaarkagipviftrdvhe...leevkgdlderkaaphfkpgttgaelvpelaplegdvvvd 92 
                      al+++D+qndf+e+g  ++++ ++v + i++ll+a  +++ +v++t+d+h        ++++  + +++h++ gt+g+e++pela +  + +++
       KIR65387.1   4 ALIIVDVQNDFCEGGSLAVAGGAGVAAGISRLLAAEPDRWDHVVATKDYHVdpgAHFGNPPDYIDSWPAHCVVGTPGSEFHPELATDRIEAIFH 97 
                      9**************************************************99655666677789***************************** PP

  Isochorismatase  93 Kt....rfsaf.....agtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlkqafatvitt 173
                      K      +s+f     +g++l ++L+++g++++ ++G+atd CV+ata+da+++G+ ++v+ D +aa+ pe+ d al+ +  a++ ++ t
       KIR65387.1  98 KGehaaAYSGFeghaaDGERLADWLRARGVDRVDVVGVATDHCVRATALDAAREGFATTVLLDLTAAVAPETLDVALRAMDGAGVAMTGT 187
                      *9888889999**********************************************************************988887765 PP

>> Flavi_NS5  Flavivirus RNA-directed RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.1e-06     0.055     390     421 ..     114     145 ..      96     166 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.1e-06
                 STHHHHHHHHHHHHHHHTTEEEETTEEEEXXS CS
   Flavi_NS5 390 kaerveawlkehgtdrlkrmavsgddcvvkpi 421
                 + er+ +wl+ +g+dr+  + v+ d cv    
  KIR65387.1 114 DGERLADWLRARGVDRVDVVGVATDHCVRATA 145
                 569************************96543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1531.55
//
Query:       KIR65388.1  [L=428]
Description: nicotinate phosphoribosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-27   96.1   0.0    4.1e-27   95.0   0.0    1.6  2  NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N
    5.7e-06   26.2   0.8    9.2e-06   25.5   0.8    1.3  1  QRPTase_C   Quinolinate phosphoribosyl transferase, C-termina
    0.00019   21.1   0.1     0.0018   17.9   0.1    2.1  1  NAPRTase    Nicotinate phosphoribosyltransferase (NAPRTase) f
     0.0041   16.9   0.7      0.011   15.5   0.1    1.9  2  DRTGG       DRTGG domain


Domain annotation for each model (and alignments):
>> NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.0   9.3e-31   4.1e-27       1     125 []       8     132 ..       8     132 .. 0.99
   2 ?   -4.2   0.0         4   1.8e+04      77      87 ..     173     183 ..     172     186 .. 0.71

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 9.3e-31
  NAPRTase_N   1 LdtDlYkltmaqavfkkgp.dvevvfelffRkkpfkgeyaivagleevieylenlrfteeeieyLkrklpyfkedfleyLrtfrfkpsevaveeeevvf 98 
                 L+tD Y+ltm  a +  g+ d+++vfe+f R+ p +++y++vag  + i++++++rf+ +e+++L+ +++ +++   ++L+++rf++++    e+e +f
  KIR65388.1   8 LLTDHYELTMVSAALADGTaDRPCVFEVFSRRLPTGRRYGVVAGTARLIDMIRDFRFSADEVDFLR-RTGVVDDTGADWLARYRFTGDIDGYAEGELFF 105
                 89***************************************************************9.9******************************* PP

  NAPRTase_N  99 pgepeirveGpwieaillEtplLaivn 125
                 pg+p+++v+G  +e+ +lEt +L+++n
  KIR65388.1 106 PGSPILTVSGGFAECVVLETLVLSVLN 132
                 ************************987 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 4
  NAPRTase_N  77 eyLrtfrfkps 87 
                 +yL+ frf+++
  KIR65388.1 173 AYLAGFRFTSN 183
                 57888888765 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.8   2.1e-09   9.2e-06       1     158 [.     137     307 ..     137     311 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 2.1e-09
                 HHHHHHHHHHHHHCTSSEEEE-S---TTTHHHHHHHHHHTTSB.......--TSSTTTSEEE-HHHHHHHSSHHHHHHHHHHHHTTTSEEEEEESSHHH CS
   QRPTase_C   1 iAtltarmveaaksakvrildTRkttPglrllekyAvliGGgd.......nhrlgLsdmvlikdnhiaaagsiveavksvreavdkevkieveveslee 92 
                 +A ++armv aa++     ++ R+ +   ++++ +A++++G +        +r+g+  + +  ++   +  + + a  s  + ++k   + v+++   +
  KIR65388.1 137 VAAAAARMVTAARGRALIEMGSRRAHEEAAVAAARAAYLAGFRftsnlaaGQRYGIPTAGTAAHAFTLLHDDERAAFASQVATLGKDTTLLVDTYDISQ 235
                 899***************************************999999999*********************************99999*****98766 PP

                 .HHHHHHHT...-SEEEEES--HHHHHHHHHHH.HHHSTT.SEEEEESS--TTTHHHHHCTT-SEEEECHHC CS
   QRPTase_C  93 .leevleae...adiimLDnfsveelkkaveel.keknkr.vlievSGgvtlenveeyaksgvdvisvgalt 158
                  +++++++       +++D  +   +++   el ++   +  +i vSG + +  ++++a + vd+++ g+++
  KIR65388.1 236 gIRNAIAVAgpeLRAVRIDSGDLAVIAQQSRELlDSLGATeTKIIVSGDLDEYAIAALAAEPVDMYGAGTAV 307
                 4788888544445679***99886555554444344444348999***********************9975 PP

>> NAPRTase  Nicotinate phosphoribosyltransferase (NAPRTase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1     4e-07    0.0018       3     216 ..     153     334 ..     152     353 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4e-07
                 EEE-TSTTSSSHHHHHHHHHHHHHHHTTTEEEESBHHHHHHHT--B--HHHHHHH.HHHHHHHCHHHHHCCHHHHHHHHHHHHHCCHIIEEECHCCTHH CS
    NAPRTase   3 lhDFGtRrrsslesqeivvkalkkahlvnflGtdnvlaaakysikaaetsaheal.gkeqelsafrnnlkqfqkdaldlwvaiekgnlgiaLtdlvltd 100
                 l ++G+Rr+++  + +   +    a l  f  t+n++a ++y+i+ a+t ah +    + e +af  +++   kd++ l  +++   + +  ++++  +
  KIR65388.1 153 LIEMGSRRAHEEAAVAAARA----AYLAGFRFTSNLAAGQRYGIPTAGTAAHAFTlLHDDERAAFASQVATLGKDTTLLVDTYD---ISQGIRNAIAVA 244
                 5689*****99999888888....9***************************98615667889999999999998877655555...566667777666 PP

                 HHHCCS-CCHHHSEEEEE-SS-HHHHHHHHHHHHHCTCTTTCCCSEEEEESS-SHHHHHHHHHHHHHTTCEEEEEESHHHHSSECTTCTTTCCEEEEEE CS
    NAPRTase 101 aflkdfrleakaylgvRpDSGdpvevieklaahygstlnskgytkrlifsDgldvekiieilealkkkgfniaFGiGtnltqdlnrdtlefavkasaln 199
                 +              vR DSGd + + ++  +   s+ +    tk+++ +D ld   i ++  +  +      +G Gt+++                  
  KIR65388.1 245 GPE---------LRAVRIDSGDLAVIAQQSRELLDSL-G-ATETKIIVSGD-LDEYAIAALAAEPVD-----MYGAGTAVVTGSGA---------PTAG 317
                 555.........3689999999877666666666666.2.22366666666.777777777666555.....57777776666555.........4455 PP

                 EEEEEEEETTEETTBGG CS
    NAPRTase 200 iviklvevnkdpvakis 216
                 +v klvev ++pv+k s
  KIR65388.1 318 LVYKLVEVAGRPVVKRS 334
                 66667777777777766 PP

>> DRTGG  DRTGG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.47   2.1e+03      40      68 ..     149     181 ..     127     190 .. 0.62
   2 !   15.5   0.1   2.5e-06     0.011      21      93 ..     255     335 ..     237     342 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.47
                 TSEEEEEETT-HHHHHHHTT-T....EEEEEEE CS
       DRTGG  40 egdlvivpGDRediqlaaleag....iaalilT 68 
                 +g+++i  G R    +aa++a+    +a+  +T
  KIR65388.1 149 RGRALIEMGSRRAHEEAAVAAAraayLAGFRFT 181
                 366666668887777777777654455555555 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 2.5e-06
                 E-EEEE-SS-HHHHHHHHHT.SEEEEEETT-HHHHHHHTT-T......EEEEEEETT---.-HHHHHHHHHHT--EEE-SS CS
       DRTGG  21 vekvvvgamsvenmlerlke.gdlvivpGDRediqlaaleag......iaalilTgglep.seevlklaeeaglpvlsvel 93 
                  +++ v+a + +++l+ l   ++ +iv+GD ++  +aal+a+      +   ++Tg+ +p +  v+kl+e ag pv++ ++
  KIR65388.1 255 SGDLAVIAQQSRELLDSLGAtETKIIVSGDLDEYAIAALAAEpvdmygAGTAVVTGSGAPtAGLVYKLVEVAGRPVVKRSE 335
                 57899**************999999999*******************9888888876555056789999999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2776.11
//
Query:       KIR65389.1  [L=96]
Description: Clp protease ClpS [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-22   77.1   0.0    8.3e-22   76.8   0.0    1.1  1  ClpS      ATP-dependent Clp protease adaptor protein ClpS


Domain annotation for each model (and alignments):
>> ClpS  ATP-dependent Clp protease adaptor protein ClpS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   4.6e-26   8.3e-22       3      79 ..      21      91 ..      20      92 .. 0.96

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 4.6e-26
                X--EEEEEES-S-S-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHSEEEEEEE-HHHHHHHHHHHHH......TT--E CS
        ClpS  3 pkqYkvvLlNDdvttmefVvevLqkvfgkskeeAteimlevhreGravvgvgtreiaetkveqverlarreghpLkv 79
                ++++++++++D+v+ m++V+ v+qk+fg+s+e+A+++ml+vh++Gravv +g re +e++++q+++      ++L++
  KIR65389.1 21 DRPWVTIVWDDPVNLMSYVTWVFQKLFGYSRERAEKLMLDVHHKGRAVVSSGARERMEHDAAQLHA------YGLWA 91
                689**************************************************************9......88877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 671.97
//
Query:       KIR65390.1  [L=166]
Description: hypothetical protein TK50_08160 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-39  135.5   0.6    5.2e-35  120.9   0.0    2.0  2  DUF2017   Domain of unknown function (DUF2017)


Domain annotation for each model (and alignments):
>> DUF2017  Domain of unknown function (DUF2017)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   2.3e-06     0.042       2      33 ..       6      37 ..       5      41 .. 0.92
   2 !  120.9   0.0   2.9e-39   5.2e-35      58     176 ..      41     164 ..      38     165 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.3e-06
     DUF2017  2 rrggrivarldeaEaelLrslvaqvlelLeer 33
                rrg+r+va+l+  E+++Lr+++++v++lL+e+
  KIR65390.1  6 RRGERYVATLAVDEVRVLRKVASEVVGLLTEG 37
                899**************************885 PP

  == domain 2  score: 120.9 bits;  conditional E-value: 2.9e-39
     DUF2017  58 eDpaLaRLLPdayredeeaaaefRrlteedlraaKraaarvvldtleedggkeveLdeeeaqawlaaLnDvRlalgtrlgieeeedae.....leelpd 151
                 +Dp++ RL+P++y +d++  aefR++te dl ++K+++a ++l++l++++g+ev+Ld+e+a+awl+aLnD Rla+g+rl+i++ +d       +   ++
  KIR65390.1  41 TDPVVGRLFPEVYPDDSAGTAEFRKYTEGDLKTGKIDQAGAILAALPDSAGGEVQLDAEAAEAWLRALNDARLAMGVRLEIKDGTDLGaeldeAVAADP 139
                 7**********************************************************************************9994345333444566 PP

     DUF2017 152 ddpraaavavyewLtvlqesLveal 176
                 +++r  +++vy +L++lqesL++a+
  KIR65390.1 140 SSSRVFQLSVYAYLGYLQESLLNAM 164
                 66688899****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1179.15
//
Query:       KIR65391.1  [L=162]
Description: peptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-28   98.3   1.0    2.9e-28   98.0   1.0    1.1  1  Prok-JAB  Prokaryotic homologs of the JAB domain
  ------ inclusion threshold ------
       0.02   14.9   0.0      0.047   13.7   0.0    1.6  1  JAB       JAB1/Mov34/MPN/PAD-1 ubiquitin protease
       0.12   11.9   0.0       0.13   11.7   0.0    1.1  1  SpoIIP    Stage II sporulation protein P (SpoIIP)


Domain annotation for each model (and alignments):
>> Prok-JAB  Prokaryotic homologs of the JAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   1.0   4.9e-32   2.9e-28       3     117 ..       7     121 ..       5     122 .. 0.92

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 4.9e-32
    Prok-JAB   3 svlsalvaharrahpeEtcGlllgkeseseevivvplvnewsn..rfeipdpedslarlkfearerglevvgiwHSHpggsarPSetDrrdaaalarvk 99 
                 s+++a+vaharr+hp+E+cG+++g++  +  ++++p++n++++  ++e+ d+ ++l++++ e+++r++e+v+i+HSH++++a+PS+tD++ a ++   +
  KIR65391.1   7 SIIDAIVAHARRDHPDEACGVVAGPAGSDTPTRHIPMENAARSmtFYEF-DSMEHLRVWR-EMDDRDEEPVVIYHSHTATEAYPSRTDISFAGEP---G 100
                 7899**********************9999999*****99999******.**********.*********************************9...7 PP

    Prok-JAB 100 alliivgd...kaeelrawrl 117
                 a++++v++   ++ee+r++r+
  KIR65391.1 101 AHYLLVSTrepDTEEIRSFRI 121
                 999999996666666688876 PP

>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.9e-06     0.047       9     107 ..       5      94 ..       2      97 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.9e-06
                 EHHHHHHHHHHHHHHHHHTS--EEEEEEEESSSEEEEEEEEEEESEEEESSECEEEEEHHHHHHHHHHHHHHHCTT.SEEEEEEEESSSS-SS--HHHH CS
         JAB   9 eslvllkildhalrtekeeeevmGlliGelnddttveitnvfalpfeetekdvdavsldqeylekksellkklrgr.ervvGWYhshpditvwlsevdv 106
                 +  ++  i+ ha+r      e +G++ G   +d     t    +p+e+++ +    + d +   ++ +   +++ r e+ v  Yhsh   ++++s+ d+
  KIR65391.1   5 DRSIIDAIVAHARRDHPD--EACGVVAGPAGSD-----TPTRHIPMENAARSMTFYEFDSM---EHLRVWREMDDRdEEPVVIYHSHTATEAYPSRTDI 93 
                 566777899*********..*************.....33444555555555334333333...344555555566699999**************998 PP

                 H CS
         JAB 107 r 107
                 +
  KIR65391.1  94 S 94 
                 6 PP

>> SpoIIP  Stage II sporulation protein P (SpoIIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.1e-05      0.13      71      94 ..      67      90 ..      20     109 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.1e-05
      SpoIIP 71 kldkskpevlIYhtHt.tEsYlpll 94
                  d++++ v+IYh+Ht tE+Y p+ 
  KIR65391.1 67 MDDRDEEPVVIYHSHTaTEAY-PSR 90
                45678888*******858***.544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1145.66
//
Query:       KIR65392.1  [L=321]
Description: cysteine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-60  202.6   0.1    1.1e-59  202.2   0.1    1.1  1  PALP      Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
       0.21   12.3   0.0         31    5.3   0.0    2.3  2  VWA_2     von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.2   0.1   1.3e-63   1.1e-59       3     294 .]       9     293 ..       7     293 .. 0.91

  Alignments for each domain:
  == domain 1  score: 202.2 bits;  conditional E-value: 1.3e-63
                 GCSSS--EEEECCTC.....CCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHH CS
        PALP   3 lgigpTPlvrlprls.....kelgvplflKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspek 93 
                 ++ g+TPlv lprls      +  v+l++KlE+ nptgS+KdR+a +++ r++     ++++t++e +sGN+g++lA++a+l G+++++v+p+++s+e+
  KIR65392.1   9 DACGGTPLVGLPRLSpvvpeGAPPVRLWAKLEDRNPTGSIKDRAALFMVRRAESDgrlRPGDTILEPTSGNTGISLAMVAKLRGYRLVCVMPENVSTER 107
                 5789***********88766566666*************************8877899***************************************** PP

                 HHHHHHTT-EEEEE..CCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEE CS
        PALP  94 vallrllGaevvev..ggdydeavaaaaelaaegegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvig 189
                 v+llr++Gae++++   g+ ++ava+a+++ ae ++++++ q++n+++  +  +t+g+E+l++l + ++++v+++G+ g+++G++++l+e+   +++++
  KIR65392.1 108 VQLLRMYGAEIIFSpaAGGSNQAVATAKQISAEHPDWVMLYQYGNEANARAhFETTGPELLQDL-PTITHFVAGLGTTGTLMGTGRYLREKVDGIQIVA 205
                 **************99999*********************************************.6************************9999***** PP

                 EEECTTCGGTTCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEE.EEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTC.. CS
        PALP 190 vepegsdalarslragrrvtvpvsdtiadglavgspselafelldrlvd.eivtvsdeealeamrllarregivvepssaaalaalklreagelkeg.. 285
                 +ep   + +++ +                 ++ g    ++ el+d++v  +  +v + +a+   r+l + egi+++ s++a l+a+ ++  +++++g  
  KIR65392.1 206 AEPRYGELVYGLR----------------NIDEG----YVPELYDATVLtRRFSVGTRDAVLRTRQLVEVEGIFAGFSTGAILHAALAVAHEAVRDGrr 284
                 ****999999999................66666....5555555554445566***********************9999999995666666666677 PP

                 EEEEEEE-B CS
        PALP 286 drvvviltg 294
                 ++v +++++
  KIR65392.1 285 ADVAFVVCD 293
                 899999986 PP

>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0035        31      36      71 ..     141     176 ..     123     198 .. 0.73
   2 ?    4.7   0.0    0.0053        48      73     106 ..     263     294 ..     235     295 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0035
       VWA_2  36 pgdrvglvtfsdgpevlipltkdkakilnalrnlea 71 
                 + d v+l +++++++  +++++   ++l+ l  ++ 
  KIR65392.1 141 HPDWVMLYQYGNEANARAHFETTGPELLQDLPTITH 176
                 5689***************98887777777766664 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0053
       VWA_2  73 gggtnlaaaLqlarkalkkrrkgekrvivlitDg 106
                 + g  l+aaL  a++a++++r  +  v++++ Dg
  KIR65392.1 263 STGAILHAALAVAHEAVRDGR--RADVAFVVCDG 294
                 5566789***********998..99999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2329.05
//
Query:       KIR65393.1  [L=248]
Description: beta-lactamase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-20   72.8   0.0    3.2e-20   72.5   0.0    1.1  1  Lactamase_B_2  Beta-lactamase superfamily domain
    8.2e-10   39.0   0.1    1.2e-09   38.5   0.1    1.3  1  Lactamase_B    Metallo-beta-lactamase superfamily
     0.0025   17.7   0.0     0.0035   17.2   0.0    1.4  1  Lactamase_B_3  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   5.3e-24   3.2e-20       2     200 ..      30     214 ..      29     215 .. 0.85

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 5.3e-24
                    EEEES--TTHHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGC...CCCC--EE....EEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE CS
  Lactamase_B_2   2 riLiDagpdlrqqalralqPvelrdelppidaVllthaHyDHlagllt...lrelrpkk....lplyapkgvlavleanfvylaleeepavnvhel 90 
                    r+L+D g + +  ++r+       + l++ da+llth H DH+ ++ +   +r+ +p+     lp+yap g  + l+    ++ + +e+  ++  l
     KIR65393.1  30 RLLVDFGSGALSTLQRY-------AGLHAPDAILLTHLHCDHMLDAASyvvVRRYAPDGpypaLPVYAPSGAPDRLALAYGQEDSTVEDVYQFYGL 118
                    56777777755553333.......47999**************87766221555444336667***************999999999989999999 PP

                    -TTSEEEECSTTEEEEEEEE-EE--CTCCE-TTTSEEEEEECTTEEEEEESS-S---HHHHHHHCT-SEEEEE-S-SSTTHHHHHHT---STSHHH CS
  Lactamase_B_2  91 dwgesfelgdggleitatparhksgrrldrnagdtlGlriegggkrvyyigDtgyipeeigerlggadllllditayeddemirhmgHltpeeave 186
                    ++g+ f +g+    +t+t  r +++        +t+G+r+e +g+ ++y+ Dt+ +++ ++ + ++adl l ++ +++  e    + Hlt +ea e
     KIR65393.1 119 QPGT-FPIGP----FTVTVDRMNHPI-------ETYGVRLEHDGRVLCYSSDTAPCEALLR-LAQDADLFLCEASYLDGVENP-PDLHLTGREAGE 200
                    9876.99994....888888999999.......9***********************8776.9***************99965.8*********** PP

                    HCTTSSSSEEEEES CS
  Lactamase_B_2 187 aaadlgakrlvliH 200
                    aa+++g++rl+l+H
     KIR65393.1 201 AATKAGVGRLLLTH 214
                    ************** PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.1   1.9e-13   1.2e-09       3      88 ..      16      95 ..      14     160 .. 0.79

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.9e-13
                 CCSSEEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHH CS
  Lactamase_B  3 pdpvnsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeead 88
                 + p+++yl+e +g  +L+D G+++  +++      ++ ++  +da++lTHlH DH+ +++  v  + +++   + ++p++ + +a 
   KIR65393.1 16 DSPCSAYLVEAEGFRLLVDFGSGALSTLQ------RYAGLHAPDAILLTHLHCDHMLDAASYVVVRRYAPDGPYPALPVYAPSGAP 95
                 6799************************9......79********************99988877777777777777777766664 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.9e-07    0.0035       8      51 ..      20      66 ..      19     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.9e-07
  Lactamase_B_3  8 nsflletagarilvDPfka...nlgyeppaeeaDlvlisqaledHah 51
                   +++l+e +g r+lvD +++   +l+ ++    +D++l+++ + dH+ 
     KIR65393.1 20 SAYLVEAEGFRLLVDFGSGalsTLQRYAGLHAPDAILLTHLHCDHML 66
                   789*************98765455666666***************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1791.89
//
Query:       KIR65394.1  [L=382]
Description: glycosyl transferase family 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-26   91.4   0.0    7.1e-26   90.8   0.0    1.3  1  Glycos_transf_1  Glycosyl transferases group 1
    3.8e-24   85.6   1.9    4.5e-24   85.4   0.6    1.8  2  Glyco_trans_1_4  Glycosyl transferases group 1
    1.7e-21   76.9  10.1    1.7e-21   76.9  10.1    2.1  2  Glyco_transf_4   Glycosyltransferase Family 4
    1.1e-10   42.2  24.2    1.1e-10   42.2  24.2    3.2  3  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    8.3e-09   35.7   0.0    2.8e-08   34.1   0.0    1.9  1  Glyco_trans_1_2  Glycosyl transferases group 1
  ------ inclusion threshold ------
       0.33   10.5   1.8        5.5    6.5   0.6    2.5  2  Peripla_BP_4     Periplasmic binding protein domain
        2.1    8.4   7.2          3    7.8   3.2    3.0  2  YAcAr            YspA, cpYpsA-related SLOG family


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.0   2.8e-29   7.1e-26       9     170 ..     196     345 ..     192     347 .. 0.92

  Alignments for each domain:
  == domain 1  score: 90.8 bits;  conditional E-value: 2.8e-29
                      TTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESS CS
  Glycos_transf_1   9 lgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsis 102
                      + +++++ ++ +vgrl +eK+vdll   ++       p v++v+aG+g+ +  l++      l   v+flg +   +l  l+ + d+fv++   
       KIR65394.1 196 SLAPDGRVLVGYVGRLAPEKRVDLLAATAR------LPGVRVVVAGDGPARRHLERA-----L-PGVTFLGVQQGAALARLYASLDVFVHTGPH 277
                      55779999***************9876666......59**********996666655.....4.79**************************** PP

                      BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHH CS
  Glycos_transf_1 103 EgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenar 170
                      E fG ++ EA a+g+pv+a ++ggp ++v++g+tGllv p+++ ala+a+++l  d+ +r+++g +ar
       KIR65394.1 278 ETFGQTIQEAAASGVPVVAPASGGPVDLVQPGVTGLLVSPGDPVALADAVAELAADPARRAAYGAAAR 345
                      *************************************************************9999998 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.7   4.4e+03      90     100 ..     108     118 ..      70     138 .. 0.68
   2 !   85.4   0.6   1.8e-27   4.5e-24       3     134 .]     204     333 ..     202     333 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.7
                      HHHTT-EEEE- CS
  Glyco_trans_1_4  90 amaaglpvVat 100
                      a+ +glp+Va 
       KIR65394.1 108 AARHGLPTVAV 118
                      45556666654 PP

  == domain 2  score: 85.4 bits;  conditional E-value: 1.8e-27
                      EEEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---...HHHHHHHTT-T.TEEEE---..THHHHHHHH-SEEEE--..---SHHHHHHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkkdvrlvivGdgp.rpeeleelaagleerveftGfv..edlaellaaadvfvaPs..egfglkllEam 91 
                       +++vGrl +++k+vdll+  + +l    vr+v++Gdgp r ++le +a    ++v+f+G    + la+l+a+ dvfv +   e+fg ++ Ea+
       KIR65394.1 204 LVGYVGRL-APEKRVDLLAATA-RLP--GVRVVVAGDGPaR-RHLE-RAL---PGVTFLGVQqgAALARLYASLDVFVHTGphETFGQTIQEAA 288
                      589*****.566***9987665.444..489********66.5999.553...9******777667*************8888*********** PP

                      HTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  92 aaglpvVatdvggiaevv..gengllvppgdpealaeailrLled 134
                      a+g+pvVa + gg+ ++v  g++gllv+pgdp ala+a+++L +d
       KIR65394.1 289 ASGVPVVAPASGGPVDLVqpGVTGLLVSPGDPVALADAVAELAAD 333
                      ******************************************876 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9  10.1   6.7e-25   1.7e-21       1     170 []      14     183 ..      14     183 .. 0.92
   2 ?   -0.4   0.2      0.38   9.7e+02      18      37 ..     227     246 ..     214     296 .. 0.56

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 6.7e-25
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeev....elvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallal 91 
                     v+Gv+ +v++ a++L  rGh+  v++p+++ + + +     + vvr+p+vplp ++++++ ++   rl+++l +++pDvvH  sp+ lga ++ l
      KIR65394.1  14 VNGVAHSVVRSAEHLLHRGHQPLVIAPAPPAARRAAAdrqpYPVVRIPSVPLPRYRGFRLGVPGG-RLAEALLAHRPDVVHLASPFVLGARAATL 107
                     69***********************9999988888888889999*******99999999888765.688888889************99888888 PP

  Glyco_transf_4  92 rrrlgiplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDler 170
                     ++r+g+p+V+ + +  + ++  +r +++++++++ +r ++++a r++a+S  +a++l++  gv+  +i  + +GvD er
      KIR65394.1 108 AARHGLPTVAVYQTDVAAYARAYRVGWGEAAAWRRLREIHNAAGRTLAPSTRAAADLIA-NGVE--RIWLWRRGVDAER 183
                     888**************999999999999******************************.**97..6*********997 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.38
  Glyco_transf_4  18 rGheVtvvtpgddgpleeev 37 
                      G++V+v  +g+ +++ e+ 
      KIR65394.1 227 PGVRVVVAGDGPARRHLERA 246
                     46677776666666666652 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2  24.2   4.2e-14   1.1e-10       2     151 ..      16     171 ..      15     178 .. 0.76
   2 ?   -0.3   4.2      0.52   1.3e+03      10      50 ..     219     260 ..     174     277 .. 0.70
   3 ?   -1.3   6.5         1   2.6e+03       6      70 ..     279     351 ..     259     359 .. 0.50

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 4.2e-14
  Glyco_trans_4_4   2 GigryvaelaraLaarGheVtvltpapapgape.leedgvrvhrlp...vprrpspladlaal.ralrrllrqrrerpdvvhahspt..aglaa 88 
                      G++  v + a++L  rGh+  v++pap++++++ +++   +v+r+p   +pr ++   +l  +  +l+++l   + rpdvvh+ sp   ++ aa
       KIR65394.1  16 GVAHSVVRSAEHLLHRGHQPLVIAPAPPAARRAaADRQPYPVVRIPsvpLPRYRG--FRLGVPgGRLAEAL--LAHRPDVVHLASPFvlGARAA 105
                      99999*******************9999997753444455555555111666654..23344335888888..8***********744588889 PP

  Glyco_trans_4_4  89 rlarrrrgiplvvtlhgll....lrrgsgavrrlyralerrllrradavlvvseaeaeelralgvpa 151
                       la+ r+g+p v  ++++     ++++ g+  +++++  r + + a + l++s+  a++l+a+gv +
       KIR65394.1 106 TLAA-RHGLPTVAVYQTDVaayaRAYRVGWGEAAAWRRLREIHNAAGRTLAPSTRAAADLIANGVER 171
                      9999.**********974422224445888777776777*************************984 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.52
  Glyco_trans_4_4  10 laraLaar.GheVtvltpapapgapeleedgvrvhrlpvprr 50 
                      l++a a++ G++V+v  ++pa++  e+  +gv+  ++  +++
       KIR65394.1 219 LLAATARLpGVRVVVAGDGPARRHLERALPGVTFLGVQQGAA 260
                      555555554555555555555554444445555555544433 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1
  Glyco_trans_4_4   6 yvaelaraLaarGheVtvltpapapgapeleedgvrvhrl.p........vprrp.spladlaalralrrll.rqr 70 
                       + +++++ aa G  V v++pa  ++ + l+++gv+   + p        + ++  + +a+ aa+ a++r+l ++r
       KIR65394.1 279 TFGQTIQEAAASG--VPVVAPASGGPVD-LVQPGVTGLLVsPgdpvaladAVAELaADPARRAAYGAAARALvARR 351
                      4555556666664..4455566666655.55555553322111111111122222224444555555555553333 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.1e-11   2.8e-08       8      85 ..     277     355 ..     260     362 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1.1e-11
  Glyco_trans_1_2   8 sespnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydh 85 
                      +e++ + + Eaaa+G+++++ ++ g+ +l++pg +++l++  d+  la+++++l a+p++r+a ++aar+ v  + ++  
       KIR65394.1 277 HETFGQTIQEAAASGVPVVAPASGGPVDLVQPGVTGLLVSpgDPVALADAVAELAADPARRAAYGAAARALVA-RRSWSA 355
                      477888999*************************************************************975.556665 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.4   3.5e+03      50     101 ..      83     133 ..      80     139 .. 0.54
   2 ?    6.5   0.6    0.0021       5.5      50     114 ..     304     330 ..     269     333 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.4
                   HHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEE.ESTTGCTTT-CEEEEE CS
  Peripla_BP_4  50 daiakgvdgiivapvdstalapalkkakaaGIpVva.fdsddapsgerlayvg 101
                   +++a  +d++ +a+  + +++ a   a+  G p va + +d  +++ r++ vg
    KIR65394.1  83 ALLAHRPDVVHLASPFVLGAR-AATLAARHGLPTVAvYQTD-VAAYARAYRVG 133
                   556666665555555553333.4444555777655524444.66666666665 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0021
                   HHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-HHHHHHHHHHH CS
  Peripla_BP_4  50 daiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayvgfdneaaGelqaey 114
                   d+++ gv g++v+p d+ ala+a+++                                      +
    KIR65394.1 304 DLVQPGVTGLLVSPGDPVALADAVAE--------------------------------------L 330
                   33444555555555555555555544......................................4 PP

>> YAcAr  YspA, cpYpsA-related SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.2    0.0012         3      11      64 ..     134     188 ..     123     190 .. 0.85
   2 ?    0.7   0.1       0.2   5.2e+02       3      31 ..     250     277 ..     229     292 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
       YAcAr  11 fadleliwatLdklhaeapidmvlvhGgakGaDrlA....arWAaergvelvrfpaDw 64 
                 +++  + w++L ++h+ a+   +l+      aD +A    + W ++rgv+ +rf++D 
  KIR65394.1 134 WGEA-AAWRRLREIHNAAG--RTLAPSTRAAADLIAngveRIWLWRRGVDAERFRPDH 188
                 6666.88999*99999999..699999999999999444446**************95 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.2
       YAcAr   3 VlvtGgrdfadleliwatLdklhaeapid 31 
                 V + G ++ a l +++a Ld +++  p +
  KIR65394.1 250 VTFLGVQQGAALARLYASLDVFVHTGP-H 277
                 333444666667788888888888777.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2954.50
//
Query:       KIR65395.1  [L=241]
Description: ribonuclease PH [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-21   75.6   0.1    1.1e-20   74.4   0.0    1.6  2  RNase_PH    3' exoribonuclease family, domain 1
    4.7e-11   42.5   0.3    7.8e-11   41.8   0.3    1.4  1  RNase_PH_C  3' exoribonuclease family, domain 2


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.0   1.3e-24   1.1e-20       1     129 [.      11     141 ..      11     143 .. 0.93
   2 ?   -1.8   0.0      0.45     4e+03      25      38 ..     190     203 ..     163     231 .. 0.64

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 1.3e-24
                 EEEEEEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG.--CC.EEEECCCCECCCCEC-C.......S...HHHHHHHHHHHHHHCCTC-CC CS
    RNase_PH   1 elRslsietgvlsqanGSaylelGdtkvlasvtgpieerpseer.ddae.galdveveyapfasger....rregrpsdeeielsrlleralrpsille 93 
                 +lR+++++ g  ++ +GS+++e+G t vl++ ++   + p++ + +  + g++++e+ + p a+++r      +g+ + ++ e+srl+ r+lr+ i l+
  KIR65395.1  11 QLRPVTLSRGWSTHPEGSVLVEFGGTRVLCTASVTEGV-PRWRKgS--GlGWVTAEYAMLPRATNTRsdreSVRGKVGGRTHEISRLIGRSLRAAIDLK 106
                 69**********************************99.8888645..349****************987655577888999***************** PP

                 GCCTCEEEEEEEEEECCCS-CHHHCHHHHHHHHHCT CS
    RNase_PH  94 kkpkstididitvlssdggslldalinaaslALada 129
                    ++ + +d+ vl++dg ++  a+i++a +AL da
  KIR65395.1 107 ALGENSVVLDCDVLQADG-GTRTAAITGAYVALHDA 141
                 ******************.***************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.45
                 CEEEEEEEEEEEEE CS
    RNase_PH  25 dtkvlasvtgpiee 38 
                 d +v+++ tg+ +e
  KIR65395.1 190 DMNVVCTGTGEFVE 203
                 45666666666544 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.3   8.7e-15   7.8e-11       3      65 ..     163     226 ..     161     228 .. 0.97

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 8.7e-15
                 -EEEEEEEETTEEEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSC.EEHHHHHHHHHHHH CS
  RNase_PH_C   3 viavtvgkvddqfvlDptkeEedlsegdltlavagtkevvtlmkeggsq.ldeetlleaielAk 65 
                 v+av+vg++ ++  lD+ +eE+  +e d++++ +gt+e v ++ +g+s+ + +++l + ++lA 
  KIR65395.1 163 VAAVSVGVIAGEARLDLCYEEDVAAEVDMNVVCTGTGEFVEVQGTGESGvFARDQLDALLDLAV 226
                 89************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1622.10
//
Query:       KIR65396.1  [L=205]
Description: nucleoside-triphosphate diphosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-60  203.4   0.0    3.2e-60  203.3   0.0    1.0  1  Ham1p_like  Ham1 family


Domain annotation for each model (and alignments):
>> Ham1p_like  Ham1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.3   0.0   1.8e-64   3.2e-60       1     186 [.       4     195 ..       4     196 .. 0.93

  Alignments for each domain:
  == domain 1  score: 203.3 bits;  conditional E-value: 1.8e-64
                 EEEC-S-HHHHHHHHHHTTT....ECCCE.EECCC.CEE----BSSSHHHHHHHHHHHHHH.HTS-EEEEEEEEEEGGGTTTBGGGTTTTTHTTCHHHH CS
  Ham1p_like   1 ivfaTgNkgKlrevkeilae....ellevkslkel.elpeveEtqgtfeenalkKaraaae.aglpvladDsgLevdaLnglPGvysarfagegaedee 93 
                 +++aT+N++Kl e+++il++    + +++  l+++ e pe++Et+ tf enal+Kar+ ++ +glp++adDsgL+vdaLng+PGv+sar++g++++d++
  KIR65396.1   4 VLLATRNRKKLVELQRILDGalgaHRVALLGLDDVeEYPELPETGLTFGENALIKAREGCRrTGLPTIADDSGLAVDALNGMPGVFSARWSGKHGDDRA 102
                 579**************9888766666666888889999999****************99768************************************ PP

                 HHHHHHHHCTHTT.S--EEEEEEEEEEEETTTTEEEEEEEEEEEEE-SS.--SSSSTTGGGEEETT-SSBTTTS.CHHHHHHSHHHHHHHHHHH CS
  Ham1p_like  94 nlaklleeleeee.edrsArfvcvlaladpeeeeellfeGeveGeiveeprgeggfGyDpiFvpeegektfaelskeeknaiShRgkAleklle 186
                 nl+ +l+++++ + e+r+A+fvc++al+ p +++e+l+ G+  G+++++prgeggfGyDpiF  +++++t ael+++ek+aiShRgkAl++l++
  KIR65396.1 103 NLELVLDQIADLPdEHRGASFVCTVALVLP-GGKEHLVDGRQAGRLLRAPRGEGGFGYDPIFLGDGQDRTNAELTPQEKDAISHRGKALRELAK 195
                 **********966699**************.6666*****************************77677**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1408.34
//
Query:       KIR65397.1  [L=306]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-19   68.7  18.2      1e-11   43.9   3.2    2.0  2  Mem_trans  Membrane transport protein


Domain annotation for each model (and alignments):
>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   7.2   5.8e-12     1e-07      11     136 ..      13     135 ..       4     143 .. 0.82
   2 !   43.9   3.2   5.7e-16     1e-11     244     384 ..     161     299 ..     150     301 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 5.8e-12
   Mem_trans  11 vimllgYgsvkwvkiftpdqcsginrfVvlfavPllifhfisqnnpyemllrfiladvlvklivlillllgallskifkgslewtitlfslstlpNtlv 109
                  ++ +gY+ ++  +++ p +  +++r+ + +a P+l+f +++ ++  e +   +++ v   ++v+++++l a l    +++  +  +  ++s++ N ++
  KIR65397.1  13 AVIGVGYLVGRL-GVLGPGASTVLSRVAFFVAAPALLFDTVAHADLREVFSAALVVTVAGTAVVATVFVLVARLL--WRRPAAEATIGALTSSYVNAAN 108
                 567899*****9.********************************999655555555555555555555555554..48888999999999******** PP

   Mem_trans 110 lgipllkalygeygvslmvqvvvlqci 136
                 +gip+   + g+ +    v++ +l ++
  KIR65397.1 109 IGIPVAVYVLGDASFIAPVIMFQLVVM 135
                 ************999999999888776 PP

  == domain 2  score: 43.9 bits;  conditional E-value: 5.7e-16
   Mem_trans 244 irnPntyssllglilslvsfkwnvimpkiiqksisilgdaglpmalfslGlfL..alqpkkiacgnsvatfalavRlilgPlvml.vavlavgLrgsll 339
                 + nP t++  lgl + l +++ +    + + + +++ + +++p+al+s Gl+L  a +p + + g +v   a+a++ +++P+v + va  a+gL+  + 
  KIR65397.1 161 LANPVTVGCALGLAVNLTGWLPP----EPVLRPVELVAAMAVPAALLSYGLSLhgAPRPGSGDTGRDVW-LAVALKTLAQPVVAYlVARHALGLPQPTV 254
                 67*******************88....**************************4445666777777775.78*********99861566799******* PP

   Mem_trans 340 lvaivqaAlPqgivlfviAkeynvherelstllifgmlialpitl 384
                 l+  v aAlP++ + fv A +y+ +  ++ ++++++++ a+p+++
  KIR65397.1 255 LACTVTAALPTAQNVFVYAVRYDRGVVLARDAVLLSTVAAVPVLI 299
                 *****************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2189.63
//
Query:       KIR65398.1  [L=512]
Description: histidine ammonia-lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.7e-180  599.5  10.1   4.5e-180  599.3  10.1    1.0  1  Lyase_aromatic  Aromatic amino acid lyase


Domain annotation for each model (and alignments):
>> Lyase_aromatic  Aromatic amino acid lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  599.3  10.1  2.5e-184  4.5e-180       2     461 ..      12     470 ..      11     472 .. 0.98

  Alignments for each domain:
  == domain 1  score: 599.3 bits;  conditional E-value: 2.5e-184
                     -HHHHHHHHTCCCEEEE-HHHHHHHHHHHHHHHHHHHCTB--TTTSB-SGGGGGBB--HHHHHHHHHHHHHHC---EEEE--HHHHHHHHHHHHH CS
  Lyase_aromatic   2 tledvvavargkakvelspearerveasravleeilaegepvYGvntGfGaladvripkedleelqrnllrshaaGvgeplpeevvRaamllrln 96 
                     +++dv avarg+akv l+p+++++++ sr +++ i a+g+pvYGv+tGfGala++ +++++++elq++l+rshaaGvg+p+p+evvRa+mllr+ 
      KIR65398.1  12 SPADVLAVARGAAKVVLDPSTVAAMATSRSIVDGIEAAGRPVYGVSTGFGALANTFVAPDRRAELQHALIRSHAAGVGAPMPREVVRAMMLLRVR 106
                     689******************************************************************************************** PP

                     HHTTS-S---HHHHHHHHHHHHCTEEE--EEES-------HHHHHHHHHHHTTSSTCCET.TEEEEHHHHHHHTT------TTTHHHHCCSTTHH CS
  Lyase_aromatic  97 slakGysGvrpevverllellnagitPvvperGSvGaSGDLaplahlalvliGegevyyk.gerlpaaealaeaglepleleakEgLAlinGtal 190
                     sla G sGvrp v+e+l++llna++tP+vpe+GS+GaSGDLaplah+alvl+Geg v    gerlpaaeal++agl+p+el+akEgLAlinGt  
      KIR65398.1 107 SLALGRSGVRPLVAEALVDLLNADVTPWVPEHGSLGASGDLAPLAHCALVLLGEGWVLGPaGERLPAAEALDAAGLAPVELAAKEGLALINGTDG 201
                     ********************************************************98446********************************** PP

                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-BCGGG-HHHHCCS--HHHHHHHHHHHHHTTT-SSS...-SB-SS-SS--HHHHTHHHHHHHHH CS
  Lyase_aromatic 191 mtalaalaledaerllrladvaaAlslealrGsteafdprihalrphpgqievAarlrallegSelv.shekdeerlvQDayslRcaPqvhGavl 284
                     m+++ +la+ da +l+ +adv+aAl++ea+ Gs ++f p++ha+rphpgq  +Aa++++ll++S+++ sh++d +++vQDays+RcaPqv Ga++
      KIR65398.1 202 MLGMLLLAIRDAAHLFTMADVTAALAIEAMLGSERPFLPELHAIRPHPGQSVSAANIHRLLQDSAVMdSHRDDLAHAVQDAYSMRCAPQVAGAAR 296
                     ********************************************************************998999999****************** PP

                     HHHHHHHHHHHHHHTS--SSSEE.EGCCTCCE---TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTTTTT--GGG-SSTCTTB-TTHHHH CS
  Lyase_aromatic 285 dalaaarevleiElnsatDNPlvddeeegavlsgGnFhgepvalalDklaialaelaniserrierLvnpalsegLpafLaaeepglnsgfmiaq 379
                     d+l+++r v ++El s+ DNP+v    +g+v s+GnFhg+p+++a+D+laia+ae+++i+err++rL++ +++++LpafL+  ++g+nsg+miaq
      KIR65398.1 297 DTLDFVRAVADRELVSVVDNPVV--LPDGRVESTGNFHGAPLGFAADFLAIAAAEVGAIAERRVDRLLDVTRNRDLPAFLS-PDAGVNSGLMIAQ 388
                     ***********************..4689****************************************************.99*********** PP

                     HHHHHHHHHHHCHCS-SGGG--TCTTTTCSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCC-HHHHHHHHH CS
  Lyase_aromatic 380 ytaaalvsenktlahPasvdsiptsanqeDhvSmgliaarkllevvenlekvlAiellaaaqaldlrrklksspateavyea 461
                     ytaa +v+en++la+Pasvds+pts++qeDhvSmg+ a +kl++v++nl+ +lA+ellaa+++l+lr+ l++spa +a+++a
      KIR65398.1 389 YTAAGIVAENRRLAAPASVDSLPTSGMQEDHVSMGWAATKKLRTVLDNLTSLLAVELLAAVRGLQLRAPLTPSPAGRAALAA 470
                     ******************************************************************8767789999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4087.55
//
Query:       KIR65399.1  [L=455]
Description: N-formimino-L-glutamate deiminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-41  142.9   0.5    1.8e-41  142.6   0.5    1.1  1  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6   0.5     1e-45   1.8e-41       3     344 .]      62     431 ..      60     431 .. 0.89

  Alignments for each domain:
  == domain 1  score: 142.6 bits;  conditional E-value: 1e-45
                   EE-EEEEEEECETTECSSS............GHHHHH.........STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH...........HHHHHH CS
  Amidohydro_1   3 lPGlIDaHvHleqsllrga............tledwl.........vppetaaealesgiktalksGtttvadmgattst...........gieall 67 
                   lPGl +aH H+++++lrg+            ++++w+         ++p+ + + ++ + +++  +G+t v ++++ ++              +al 
    KIR65399.1  62 LPGLANAHSHAFHRALRGRtqgadggpggrgDFWSWRdrmyevaarLDPDSYLALARAAYAEMALAGFTCVGEFHYLHHGpdgtryadpnaMGAALV 158
                   8*********************************************999999999*********************98889******9998777778 PP

                   HHHHTSSSEEEEEEESSEGGS.................GCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTE CS
  Amidohydro_1  68 eaaeelplglrilggkvsldr.................gsaetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlp 147
                   eaa ++  g+r+ +  + + +                 g+ +   ++  +l+a +    +++      ++ a h+  a+++++++  +  a+ +++p
    KIR65399.1 159 EAAAQA--GVRLTLLDTLYLTatvdgaplagpqrrfgdGDVDGWSDRHDRLAAAP----HAR------IGAALHSVRAVPADQIATFA--ARNEGVP 241
                   888887..*****998887779************997766666666666666666....544......999*************9998..9****** PP

                   EEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEE CS
  Amidohydro_1 148 vaiHaletkgevedaeaafgetiehgthlevaeslglldeiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvkvgl 244
                   +++H++e+++e+ +++aa+g      t+++ + + g+l++ +++++h +hlt ++++ll  +  ++gv++cp++++ l++g+ ++r++ d+Gv  +l
    KIR65399.1 242 LHVHLSEQPAENDACRAAHG-----VTPTRLLADRGVLTP-TATAVHATHLTSADVTLLGDA--GTGVCLCPTTERDLADGIGPARRLADAGVALSL 330
                   ********************.....89*************.*********************..********************************* PP

                   EEECTTSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCT........CGGGTTTCTSEE CS
  Amidohydro_1 245 gtDgaasgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldi........laafvglkkdgn 333
                   g+D   s  +++ +ee r   +  r  l+++ +g++ ++e+l++aT  g  alg++ ++G+++vG +ADlv v ld+          af+  +    
    KIR65399.1 331 GSD---SHAVVDPFEEARAVELDER--LRTRRRGHFAPAELLTAATAAGHAALGWA-DAGRLAVGARADLVTVRLDSartagvppVGAFFAATA-AD 420
                   ***...5555555577777665555..333459**********************7.****************995556667665666666655.88 PP

                   EEEEEETTEEE CS
  Amidohydro_1 334 vkkvivkGklv 344
                   v++v+v+G++v
    KIR65399.1 421 VASVVVDGRQV 431
                   ********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3550.01
//
Query:       KIR65400.1  [L=412]
Description: allantoate amidohydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-22   79.3   0.4    4.5e-22   78.8   0.4    1.3  1  Peptidase_M20  Peptidase family M20/M25/M40
    1.1e-05   25.2   0.6    1.7e-05   24.6   0.0    1.6  2  Peptidase_M28  Peptidase family M28
     0.0015   18.4   0.1     0.0028   17.5   0.1    1.4  1  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.4   7.5e-26   4.5e-22       1     206 [.      89     407 ..      89     408 .. 0.89

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 7.5e-26
                    EEEEES-BSSTTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.....THHHHHHHHHH.T... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxx.x... RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.....gGakallegle.e... 87 
                    l+gsH D+Vp     g           G ++G+       g+++a+ a+ +l+++g++p +++v++++++EEg+r      G++ l++ l  +   
     KIR65400.1  89 LTGSHFDSVP----HG-----------GAYDGP------LGIVSAFLAVDELRAAGVTPSRPLVVAAFAEEEGARfgvpcLGSRLLTGALDaDraa 163
                    579*******....44...........555555......**********************************99889999999999944433677 PP

                    .........................TTCESEEEEEEEESSSBTCHSTETEEEE........................................... CS
                    .........................xxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................... RF
  Peptidase_M20  88 .........................rekvdavfelhieepgileagklaigvv........................................... 115
                                               ++ +++elh+e++  l++++  + v                                            
     KIR65400.1 164 glrdadgvslaealgdrpagprpdlLGGWSCFVELHVEQGRALVDQGTPVAVAsaiwphgrwrfdfhgegnhagttrmadrrdpmltyaftvlaan 259
                    7777899999999999999999998779****************8885555559****************************************** PP

                    ...............................................................EEEEEEEEEESHEEEC.CHHHHHHHHHHHHHHH CS
                    ...............................................................xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
  Peptidase_M20 116 ...............................................................kvevelleggapvtln.dsplvkalaeaaeelf 147
                                                                                   +v+v+  e++a + +  d++l   la+ +++  
     KIR65400.1 260 kearlrgahatvgrvrvepnatnaiparvtgwldaraadpetvaglveavrakaaeragrdgtEVTVT--EESATPLVGfDGDLGGRLAALLDA-- 351
                    ************************************************************97557777..55555555556*******999766.. PP

                    TSCEEEEEESSSBHTHHHHTTT.EEEEEEESSG.GCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 148 gekvelivsgpggtdarffagi.ptvmifgpgs.glaHspnEyvdledlekgikvlarlle 206
                         + ++g +g+da+++ag  pt+m+f+++  g +Hsp E   ++d+++g+ +lar+l 
     KIR65400.1 352 ----PVLPTG-AGHDAGILAGHlPTAMLFVRNPtGVSHSPAEAATDADCAAGVTALARVLT 407
                    ....345899.********9999*****998845************************986 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.9e-09   1.7e-05       1      82 [.      74     154 ..      74     177 .. 0.85
   2 ?   -3.3   0.1         1   6.1e+03      37      50 ..     394     407 ..     384     410 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.9e-09
                    EEEEEESTTCESEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSG.....SSHHHHHHH CS
  Peptidase_M28   1 NviatlegkatdevlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEa.....gllGSkafa 82 
                    N+ a++   a +  +l g+H+Dsv+        GA D   g+++    +  l a g +p r +++++f  EE       +lGS+ + 
     KIR65400.1  74 NLFARWGEPAAPGAVLTGSHFDSVPH---G---GAYDGPLGIVSAFLAVDELRAAGVTPSRPLVVAAFAEEEGarfgvPCLGSRLLT 154
                    7889995444489************5...7...9********999999999999999***********9999999999999998776 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1
                    TTHHHHHHHHHHHH CS
  Peptidase_M28  37 DnAsgvaalLelar 50 
                    D+A+gv al  +++
     KIR65400.1 394 DCAAGVTALARVLT 407
                    77777777766554 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   4.7e-07    0.0028      10     107 ..     226     319 ..     209     321 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.7e-07
                 EEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC...........................TCCTCCCCCEECCE-C.CCCEESSEEEEEEEEEHH CS
   M20_dimer  10 kitvkgkagHsgapgagaNAieklarllaeledeegdia......................eerslprttlnvtgiegGs.aknvipdeaeakidiRll 85 
                 +  ++g++ H+                           +                      +e +l++   +v+ ++    a+n+ip++++ ++d R  
  KIR65400.1 226 RFDFHGEGNHA---------------------------GttrmadrrdpmltyaftvlaanKEARLRGAHATVGRVRVEPnATNAIPARVTGWLDARAA 297
                 44455555555...........................2333333333333333333333344678899999999999999****************** PP

                 HHHHHHHHHHHHHHHHTSCCST CS
   M20_dimer  86 pgedpeevleeieeilekeape 107
                 + e+++ + e++++ ++++a +
  KIR65400.1 298 DPETVAGLVEAVRAKAAERAGR 319
                 ***************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3099.97
//
Query:       KIR65401.1  [L=565]
Description: urocanate hydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.2e-93  309.7   0.3    1.7e-92  308.3   0.3    1.7  1  Urocanase_C  Urocanase C-terminal domain
    2.8e-78  262.4   0.0    3.7e-78  262.0   0.0    1.2  1  Urocanase    Urocanase Rossmann-like domain
    8.5e-58  193.6   0.0    1.3e-57  193.0   0.0    1.3  1  Urocanase_N  Urocanase N-terminal domain


Domain annotation for each model (and alignments):
>> Urocanase_C  Urocanase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.3   0.3   2.8e-96   1.7e-92       1     195 [.     354     548 ..     354     549 .. 0.99

  Alignments for each domain:
  == domain 1  score: 308.3 bits;  conditional E-value: 2.8e-96
                  HHHTTT---EEEEETT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH----SS-EEE----TTHHHHHHHHHHHHHHHSSSSS-EEEEE-S-STTS CS
  Urocanase_C   1 plFsegkGPFRwvalsgdpeDlaktdeavlellkekedlirWikeAeekvkvqGlpaRilyldaeeRekialafnelvregeikapvvlgRDhlDvgs 98 
                  plF+ gkGPFRw+alsgdp+D+a+td+a+l+l++e+e+l+rWi+ A e+v++qGlpaRi++l+++eR++++++fne+v++ge++apvv+gRDhlD+gs
   KIR65401.1 354 PLFCAGKGPFRWAALSGDPADIAATDRAILDLFPENESLARWIRLAGERVAFQGLPARICWLGYGERDRAGVRFNEMVASGELSAPVVIGRDHLDCGS 451
                  79************************************************************************************************ PP

                  EE-TTTTTTT-TTS-TTB-HHHHHHHHHHHHHT-SEEEEEESTTT-TTS-EEEEEEEEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHH CS
  Urocanase_C  99 vasPfretenikDGsdaiaDwavlnallnaargatwvslhnGGgvgiGesinagfvvvldGteeaeerlervltaDvalGvvRradagyeealevak 195
                  vasP+rete++ DGsdaiaDw++lnal+n+a+ga+wvs+h+GGgvgiG+s++ag+v+v+dGt+ a +++ervlt+D+a+Gv+R++dagy++a+eva 
   KIR65401.1 452 VASPYRETEAMADGSDAIADWPLLNALVNTASGASWVSIHHGGGVGIGRSLHAGQVCVADGTALAGQKIERVLTNDPAMGVIRHVDAGYDAAREVAA 548
                  ********************************************************************************************99875 PP

>> Urocanase  Urocanase Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.0   0.0   6.2e-82   3.7e-78       1     210 []     134     351 ..     134     351 .. 0.98

  Alignments for each domain:
  == domain 1  score: 262.0 bits;  conditional E-value: 6.2e-82
                 TTHHHHHHHHHHHHHHHHHHS.........T.T--TT-EEEEE--STTGGGHHHHHHHTT-EEEEEES-HHHHHHHHHTTS-SEEES-HHHHHHHHHHH CS
   Urocanase   1 GpQGivqGTyetllnaarkkl.........gkgdlkgklvvtaGlGgMsgaQplAatiagavalvvevdesriekrleqgyvdevaddldealalikea 90 
                 G+QGi+qGTyet++++a k           g g+l+g+l++taG+GgM+gaQplA+t++g+++l+v+vd+sr+++r++ +y+devad+ld+al+++ +a
  KIR65401.1 134 GTQGILQGTYETFAAVAAKFAgargdgqqhGGGTLAGTLTLTAGCGGMGGAQPLAVTMNGGACLIVDVDRSRLDRRVRDRYLDEVADSLDDALDRVLAA 232
                 9****************99887787777665699***************************************************************** PP

                 HHCT--EEEEEES-HHHHHHHHHCTT---SEE---S-TT-TTTS---TT--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-EE-B-SS-HH CS
   Urocanase  91 kkekealsigllgnvvdvleelveegvlvdlvsdqtsahdplnGYlPegltleeakelrkedpekfkeevkeslarhveailklqekGavvfdYGnnlr 189
                 k++++als+g++gn+++v++el+++gv +d+v+dqtsahdpl+ Y+Peg++l++a +++k++p++f++++++s+a+hvea++ + ++Ga+vfdYGn++r
  KIR65401.1 233 KRDRRALSVGVVGNAATVFPELLRRGVAIDVVTDQTSAHDPLS-YVPEGVELADAPDYAKAKPAEFTDRARASMAKHVEAMVGFLDAGAEVFDYGNSIR 330
                 *******************************************.******************************************************* PP

                 HHHHHTT-TTGGGS-BHHHHT CS
   Urocanase 190 keakeagvkeafkypsyvedi 210
                  ea+  g+++af++p++v+++
  KIR65401.1 331 GEARLGGYERAFDFPGFVPAY 351
                 *******************98 PP

>> Urocanase_N  Urocanase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.0   0.0   2.2e-61   1.3e-57       1     127 []       5     131 ..       5     131 .. 0.99

  Alignments for each domain:
  == domain 1  score: 193.0 bits;  conditional E-value: 2.2e-61
                  -----SS--SSSSHHHHHHHHHHHHCT-TTT-SBGGGTEEETTTEESSSSHHHHHHHHHHHHH--TTEEEEEETTEEEEEEE--TTS-SEEEEES-B- CS
  Urocanase_N   1 ikakrgeelkaksweaeailrmleNnLdpevaekpeeLvvYggtgkaarnweqfelivktLkeleedetLlvqsGkpvglfksheeaPrvliansnlv 98 
                  ++a rg +l+a++w +ea+lrml+NnLdpevae+p++LvvYggtg+aar+w +++++v+tL++l++det+lvqsG+pvg++++he+aPrvl+ansnlv
   KIR65401.1   5 VRAARGAALTARGWPQEAALRMLMNNLDPEVAERPDDLVVYGGTGRAARDWPSYHALVRTLTDLRDDETMLVQSGRPVGVLRTHEWAPRVLLANSNLV 102
                  699*********************************************************************************************** PP

                  GGG-SHHHHHHHHHTT---B-TTTTTTT- CS
  Urocanase_N  99 pkyateeefeeleakgltmyGqmtAgswi 127
                  +++at+ ef++le++gltmyGqmtAgswi
   KIR65401.1 103 GDWATWPEFRRLESLGLTMYGQMTAGSWI 131
                  ****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 3575.59
//
Query:       KIR65402.1  [L=285]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-12   45.3   0.0    1.2e-11   44.4   0.0    1.3  1  HTH_6          Helix-turn-helix domain, rpiR family
    2.6e-07   30.5   0.1    4.8e-07   29.7   0.1    1.4  1  SIS            SIS domain
     0.0071   16.1   3.2      0.039   13.8   0.2    3.3  3  HTH_IclR       IclR helix-turn-helix domain
     0.0084   15.2   0.1      0.033   13.3   0.1    2.1  2  AstE_AspA      Succinylglutamate desuccinylase / Aspartoacyla
  ------ inclusion threshold ------
      0.015   15.1   0.4      0.015   15.1   0.4    3.0  3  MarR_2         MarR family
       0.02   15.2   0.8       0.02   15.2   0.8    4.0  5  HTH_31         Helix-turn-helix domain
      0.025   14.6   0.5      0.069   13.1   0.1    2.0  2  HTH_Crp_2      Crp-like helix-turn-helix domain
      0.097   13.1   0.1         54    4.3   0.0    3.4  4  HTH_26         Cro/C1-type HTH DNA-binding domain
      0.099   12.8   0.0       0.72   10.1   0.0    2.2  2  HTH_17         Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   5.9e-15   1.2e-11      13      71 ..      22      80 ..      18      84 .. 0.95

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 5.9e-15
                ---HHHHHHHHHHHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSHHHH--HHH CS
       HTH_6 13 kltksekkiaeyilaspdkaielsikalAkaaavSeativrfakkLGfkGFselklaLa 71
                 lt+  ++ia  + ++   a +ls +++A+ a+vS+++++rfa  LG  G+++l+ +L 
  KIR65402.1 22 RLTPTQRRIAHSLVQHAAAAAYLSAAEVAELAGVSQPSVTRFAVALGHDGYPALRRRLR 80
                69999**************************************************9996 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.1   2.4e-10   4.8e-07       2     129 ..     129     255 ..     128     262 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.4e-10
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGG..GG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvl..alideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplarea 98 
                 La ++ + vlG ++ +++a+++a+  +++   v + +d ++l  + l  a +  ++ ++++   ++ +++++a+ +a++ g +++aITds+ sp+ ++a
  KIR65402.1 129 LAASRPLPVLGLRAAAPLAAYFAFFAAKVHPDVRVLDDGGSLLADRLeqAAAAGATALLAFVLPRYPRETLDALAEARAAGLTVVAITDSPVSPATEHA 227
                 6666777799*******************************7777672234556799****************************************** PP

                 SEEEEEEEECHCSSSHCHHHHHHHHHHHHHH CS
         SIS  99 dlalyinaepetlvastksltaqlaaldala 129
                  ++l  +++       ++  ta +++ ++++
  KIR65402.1 228 EVVLPAAVGTDL---VFDLHTAPMTLAMVVL 255
                 999999999888...6666666666666654 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   1.9e-05     0.039      16      47 ..      41      72 ..      10      72 .. 0.84
   2 ?    0.7   0.1      0.23   4.6e+02       9      24 ..     199     213 ..     198     217 .. 0.80
   3 ?   -2.6   0.0       2.5     5e+03      16      24 ..     245     253 ..     241     274 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.9e-05
                BSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
    HTH_IclR 16 pqeltlselArrtglpkStvhRlLqtLvelGy 47
                +  l+ +e+A+ +g++ ++v R+   L + Gy
  KIR65402.1 41 AAYLSAAEVAELAGVSQPSVTRFAVALGHDGY 72
                333899*********************99998 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.23
                 HCT-CTTBSS-BHHHH CS
    HTH_IclR   9 Ldalaeapqeltlsel 24 
                 Ldalaea+ + +l+ +
  KIR65402.1 199 LDALAEARAA-GLTVV 213
                 89*****998.66655 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.5
                 BSS-BHHHH CS
    HTH_IclR  16 pqeltlsel 24 
                 + ++tl+ +
  KIR65402.1 245 TAPMTLAMV 253
                 566666654 PP

>> AstE_AspA  Succinylglutamate desuccinylase / Aspartoacylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.74   1.5e+03      20      55 ..     123     163 ..     122     170 .. 0.77
   2 !   13.3   0.1   1.7e-05     0.033      82     138 ..     220     274 ..     178     280 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.74
                 HHHHHHHHHHHCCCESCCEEEEEESSHHHHHCTS.....SS CS
   AstE_AspA  20 ellrqllkqleeadilgeitlvplaNppAiaags.....Ry 55 
                 +++ +ll + ++  +lg + + pla ++A+ a++     R 
  KIR65402.1 123 AAVGKLLAASRPLPVLGLRAAAPLAAYFAFFAAKvhpdvRV 163
                 56778888888999999999999999999988775555555 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHCHCTCCCGCEEEEEEEESSTBCC.SSEEEE---SSHHHHHHHHHHTT CS
   AstE_AspA  82 ateaerladalfaaalpeadivlDLHtgtrglkh.llfaeadiaeaqlqslallkalg 138
                 ++ a + a+   +aa    d+v+DLHt++ +l++ +l a++d a+a++   + l+a++
  KIR65402.1 220 VSPATEHAEVVLPAA-VGTDLVFDLHTAPMTLAMvVLSAICDAAPAET--QRRLEAFE 274
                 667788888899889.69***********9998625788999999988..66666655 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.4   7.7e-06     0.015       3      40 ..      23      62 ..      21      72 .. 0.91
   2 ?   -2.5   0.0       2.4   4.9e+03      10      24 ..     201     212 ..     186     217 .. 0.58
   3 ?    0.8   0.0      0.23   4.5e+02      12      47 ..     241     275 ..     237     277 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.7e-06
                --HHHHHHHHHHHCTTTS..EEEHHHHHHHHTSSHHHHHH CS
      MarR_2  3 ltpaqarvLaaLgrrpgr..dltvgelarrlglsksavsr 40
                ltp+q+r+ + L  +      l+++e+a+  g+s+++v+r
  KIR65402.1 23 LTPTQRRIAHSLVQHAAAaaYLSAAEVAELAGVSQPSVTR 62
                8***************987766*****************9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.4
                 HHHHHHCTTTSEEEH CS
      MarR_2  10 vLaaLgrrpgrdltv 24 
                 +La+ ++++   ltv
  KIR65402.1 201 ALAEARAAG---LTV 212
                 333333333...454 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.23
                 HHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2  12 aaLgrrpgrdltvgelarrlglsksavsrilkrLva 47 
                 + L+ +p   l++  l + ++  ++ ++r+l+ +++
  KIR65402.1 241 FDLHTAPMT-LAMVVLSAICDAAPAETQRRLEAFES 275
                 556666654.78889999999999999**9999986 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.41   8.3e+02      35      61 ..       3      28 ..       3      31 .. 0.77
   2 ?   15.2   0.8     1e-05      0.02       6      34 ..      35      63 ..      33      88 .. 0.88
   3 ?   -1.8   0.1       2.1   4.2e+03      22      37 ..     100     115 ..      95     143 .. 0.56
   4 ?   -1.7   0.7         2   3.9e+03      14      23 ..     174     183 ..     124     188 .. 0.60
   5 ?   -1.4   0.9       1.5     3e+03      43      53 ..     195     205 ..     173     215 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.41
      HTH_31 35 EqGrrgrpspavlealaralgldpaer 61
                E G+ g  s + +  l ++++l+p +r
  KIR65402.1  3 EGGTVG-ASADRVLDLFQGVRLTPTQR 28
                567776.78888888999999988887 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1e-05
      HTH_31  6 LralReraGLsqeevAerlgvsestlsrl 34
                ++++ ++a Ls +evAe++gvs+  ++r 
  KIR65402.1 35 VQHAAAAAYLSAAEVAELAGVSQPSVTRF 63
                56777899******************995 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.1
      HTH_31  22 erlgvsestlsrlEqG 37 
                 +++g  ++ l rl   
  KIR65402.1 100 RAVGTEVANLERLAGE 115
                 4445555555444443 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 2
      HTH_31  14 GLsqeevAer 23 
                 +L q+++A++
  KIR65402.1 174 RLEQAAAAGA 183
                 6666666665 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 1.5
      HTH_31  43 spavlealara 53 
                 ++++l+ala+a
  KIR65402.1 195 PRETLDALAEA 205
                 45666666655 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.5e-05     0.069       2      53 ..      29      75 ..      28      83 .. 0.82
   2 ?   -2.6   0.0       2.8   5.5e+03      31      51 ..     102     122 ..      98     128 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.5e-05
                HHHHHHHHHHCTTTCEEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE CS
   HTH_Crp_2  2 RlArfLlrlaeraggeielpltqeelAsmlGltretvsrilseLkreglisr 53
                R+A+ L+++a+ a       l+ +e A++ G+++ +v+r   +L  +g+   
  KIR65402.1 29 RIAHSLVQHAAAA-----AYLSAAEVAELAGVSQPSVTRFAVALGHDGYPAL 75
                9999999987653.....579******************9999988887773 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.8
                 TTSSHHHHHHHHHHHHHTTSE CS
   HTH_Crp_2  31 lGltretvsrilseLkregli 51 
                 +G+    + r+ +eL +   i
  KIR65402.1 102 VGTEVANLERLAGELADTDRI 122
                 566666667777777666555 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.08   1.6e+02       6      29 ..      39      62 ..      35      64 .. 0.82
   2 ?    1.2   0.0      0.26   5.2e+02      14      30 ..      96     112 ..      95     125 .. 0.88
   3 ?   -3.6   0.0         8   1.6e+04      41      49 ..     197     205 ..     193     205 .. 0.76
   4 ?    4.3   0.0     0.027        54      34      49 ..     246     261 ..     243     262 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.08
      HTH_26  6 madrgitkseLargtgisaatlsr 29
                +a+  ++++e+a+ +g+s+++++r
  KIR65402.1 39 AAAAYLSAAEVAELAGVSQPSVTR 62
                5556669**************998 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.26
      HTH_26  14 seLargtgisaatlsrl 30 
                 +eL+r++g   a+l+rl
  KIR65402.1  96 NELQRAVGTEVANLERL 112
                 69*************99 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 8
      HTH_26  41 dtLdkiCda 49 
                 +tLd++++a
  KIR65402.1 197 ETLDALAEA 205
                 899999875 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.027
      HTH_26  34 kpervsldtLdkiCda 49 
                  p ++ + +L++iCda
  KIR65402.1 246 APMTLAMVVLSAICDA 261
                 58899*********97 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00036      0.72       1      22 [.      43      64 ..      43      80 .. 0.91
   2 ?   -0.2   0.0       0.6   1.2e+03      37      50 ..     193     206 ..     193     207 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00036
      HTH_17  1 lltveEaAelLgvsrstvyrli 22
                +l+ +E+Ael gvs+ +v r++
  KIR65402.1 43 YLSAAEVAELAGVSQPSVTRFA 64
                799*************999875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.6
      HTH_17  37 riprsdleewlekr 50 
                 r+pr+ l++  e+r
  KIR65402.1 193 RYPRETLDALAEAR 206
                 89*******99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 1949.50
//
Query:       KIR65403.1  [L=498]
Description: hypothetical protein TK50_08245 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       839  (0.0467957); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 3103.39
//
Query:       KIR65404.1  [L=443]
Description: hypothetical protein TK50_08255 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-10   40.2   3.5    3.3e-10   40.2   3.5    4.6  4  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai
    0.00024   20.4   6.3    0.00024   20.4   6.3    2.5  3  Polysacc_synt_3  Polysaccharide biosynthesis protein
     0.0024   17.3  12.3     0.0024   17.3  12.3    3.3  3  Polysacc_synt    Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   5.9       1.2   7.3e+03      93     119 ..      78     104 ..      15     128 .. 0.51
   2 ?   -9.5  12.6         3   1.8e+04      92     128 ..     149     165 ..      81     187 .. 0.45
   3 ?   -6.6  10.9         3   1.8e+04      57     133 ..     251     323 ..     222     330 .. 0.47
   4 !   40.2   3.5   5.6e-14   3.3e-10       1      79 [.     339     417 ..     339     432 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.2
  Polysacc_synt_C  93 kpllaalvmgivvylllllllglllla 119
                       + la++v++++++++l +    l++ 
       KIR65404.1  78 SLRLAGAVCAALLLGVLAWSAAELPDT 104
                      333444444444444444444444333 PP

  == domain 2  score: -9.5 bits;  conditional E-value: 3
  Polysacc_synt_C  92 lkpllaalvmgivvylllllllgllllaalalllavl 128
                       ++l+ ++v                     a +l+v+
       KIR65404.1 149 GRVLVTGAVW--------------------AAGLSVV 165
                      2222222222....................2222222 PP

  == domain 3  score: -6.6 bits;  conditional E-value: 3
  Polysacc_synt_C  57 Gaaiatvlallvvavlnlyalrrllgiklellrrllkpllaalvmgivvylllllllgllllaalalllavlvgalv 133
                      G a a +la  ++ +  +y++ r +  ++ ll +l + + + +  +++    +++        + ++++av+vg+lv
       KIR65404.1 251 GGAEAALLAVPMAVLTAVYLVPRVVYQQY-LLGKLHRWAGSDAEAVLL---AYRWGSAGMVALGAVVAAAVAVGGLV 323
                      44444444444444444444444444444.344443333333333333...33333222222222444444455554 PP

  == domain 4  score: 40.2 bits;  conditional E-value: 5.6e-14
  Polysacc_synt_C   1 vLailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllliplfgivGaaiatvlallvvavlnlyalrr 79 
                      vLa+lal+++f +    ++++L++ g  ++ +++ ++galv l+   + +p +g+ Gaa atvla++v ++l+++a+rr
       KIR65404.1 339 VLAVLALAVPFRFGGAAVAALLTSGGLLRRKVVYQAVGALVLLAALAVAVPAWGVRGAAGATVLAEAVLCCLLWVAARR 417
                      79*************************************************************************9998 PP

>> Polysacc_synt_3  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   6.3     4e-08   0.00024       1     157 [.      25     182 ..      25     196 .. 0.88
   2 ?   -3.7   0.2       0.9   5.4e+03     262     275 ..     256     269 ..     241     276 .. 0.72
   3 !    2.9   2.6    0.0086        51      81     162 ..     336     416 ..     306     431 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4e-08
  Polysacc_synt_3   1 vLARLLspedFGvvaialvvislanlfvdmGlssaliqke.dlteedlstvftfnlvlgllialvlfllapliasfynqpelvtvlrvlalvli 93 
                      +LAR L+ edFG  + +l+v+sl+  ++ +G+s+  +q   +  ++ ++ v  +  + g++ a++l+ +  + a  + +  ++ v  +la v++
       KIR65404.1  25 LLARTLTREDFGSFTAVLAVVSLTAPVAVFGVSELWLQVFgQEGARAYRWVGPSLRLAGAVCAALLLGVLAWSAAELPDTTAAAVRALLATVVV 118
                      69*************************************97888889999999999999999999999999999999999************** PP

  Polysacc_synt_3  94 lsglssvqeallrrelkFkklfkitlvssvvgvivaivlAllglgvwALvigtllssllslvll 157
                       +++ ++  +  + + ++  l++ +l++ +  v+v+ ++  +gl+v A + g  + ++  +++ 
       KIR65404.1 119 AQAALALAGSVRQLRGDYRGLSALQLAPHLGRVLVTGAVWAAGLSVVAAAAGYAVVAVATVAAC 182
                      *****************************99999988888888888887776655554444444 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.9
  Polysacc_synt_3 262 alivlPiavglavv 275
                      al+++P+av++av+
       KIR65404.1 256 ALLAVPMAVLTAVY 269
                      56777777777665 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.0086
  Polysacc_synt_3  81 lvtvlrvlalvlilsglssvqeallrrelkFkklfkitlvssvvgvivaivlAllglgvwALvigtllssllslvllwlask 162
                      +++vl vlal + ++   +   all+      + ++++ v+ +v +++a+++A+  +gv   +  t+l++++ ++llw+a++
       KIR65404.1 336 AAPVLAVLALAVPFRFGGAAVAALLTSGGLLRRKVVYQAVGALV-LLAALAVAVPAWGVRGAAGATVLAEAVLCCLLWVAAR 416
                      56777777777776655555555555444444444455554444.56788999999**********************9987 PP

>> Polysacc_synt  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3  12.3     4e-07    0.0024       3     243 ..       3     257 ..       1     272 [. 0.71
   2 ?   -0.0   0.2     0.078   4.7e+02      89     137 ..     237     286 ..     225     288 .. 0.66
   3 ?   -4.2   7.9       1.5   8.9e+03     156     221 ..     295     356 ..     292     389 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4e-07
  Polysacc_synt   3 kgvivlllsqlitkllafvtlvylarilgpegfGlvalalaivtllviltdlGlnaalvreiakyrekkelvslillnvllvllvlvllfllllli 98 
                    + v  l lsq  +  +af   v+lar+l+ e+fG ++++la+v+l   ++ +G++    +   ++ +     +    ++ l+  v+++l l  l  
     KIR65404.1   3 AQVGLLGLSQAGVTVAAFGSQVLLARTLTREDFGSFTAVLAVVSLTAPVAVFGVSELWLQVFGQEGA--RAYRWVGPSLRLAGAVCAALLLGVLAW 96 
                    6688999***********************************************************9..566666667777777777777765555 PP

  Polysacc_synt  99 aa.flglpelavlylilalmllllvgvasfrrglfqglermkyaavsqvveqlsrvilvliavflfldivaavlgavlaalvggivslavlrkkfr 193
                    +a  l ++ +a  +++l ++++++ +  ++ ++  q   + + ++  q++  l+rv  ++++   +l++vaa++g+++ a+++  + l+ +r +fr
     KIR65404.1  97 SAaELPDTTAA-AVRALLATVVVAQAALALAGSVRQLRGDYRGLSALQLAPHLGRVLVTGAVWAAGLSVVAAAAGYAVVAVATVAACLLASR-EFR 190
                    44255444444.44455555554666666666666666778889999*********888888888888999999999999999555555555.885 PP

  Polysacc_synt 194 .................prfvilslklvrellsfsapltisslaillytyidsillglllgaeavGi 243
                                     p   +    +  ell  ++p++++ +  ll   + ++l++ llg  +++ 
     KIR65404.1 191 rgampleghpapaapavPAGDVDAGPRPGELLGAATPYVLGNVCYLLGIHFGTVLAAELLGGAEAAL 257
                    4666666666666555544444434444566666666666666666666666666666666655555 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.078
  Polysacc_synt  89 vllfllllliaaflglpelavlylilalmll.llvgvasfrrglfqgler 137
                    + + + + l a++lg+ e+a+l + +a+  + +lv+ + ++  l+  l+r
     KIR65404.1 237 LGIHFGTVLAAELLGGAEAALLAVPMAVLTAvYLVPRVVYQQYLLGKLHR 286
                    44555566666677888888777777777776777777777777666665 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 1.5
  Polysacc_synt 156 vliavflfld.ivaavlgavlaalvggivslavlrkkfrprfvilslklvrellsfsapltisslai 221
                    vl+a +++++ +va++++ ++a+ vgg+v+l +++     + +    + v   l  ++p+ ++ +a+
     KIR65404.1 295 VLLAYRWGSAgMVALGAVVAAAVAVGGLVALPLVF----GPAYRD-AAPVLAVLALAVPFRFGGAAV 356
                    67777777779999999999999999999998888....333333.555666666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3071.49
//
Query:       KIR65405.1  [L=375]
Description: hypothetical protein TK50_08260 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-20   74.2   0.0    2.1e-20   73.8   0.0    1.1  1  PS_pyruv_trans  Polysaccharide pyruvyl transferase
  ------ inclusion threshold ------
        0.2   11.5   0.1       0.39   10.6   0.1    1.4  1  Csm4_C          CRISPR Csm4 C-terminal domain


Domain annotation for each model (and alignments):
>> PS_pyruv_trans  Polysaccharide pyruvyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.0   2.3e-24   2.1e-20      66     284 ..      84     309 ..      45     311 .. 0.75

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 2.3e-24
                     .EEE--E....EEEETT-HHHHHHHHHHHHHS-SSEEEE-SEEE..-S-HHHHHHHHHHHHHTTEEEESSHHHHH.HHHHHHTT-EEE---GG.G CS
  PS_pyruv_trans  66 dviivGgdgtlgndgdlsrlpdalrllflakkagkpviilgqgiGpflnealrkllkkilakadlisvRdelSaelleslglkrnveltpDpa.f 159
                      ++++Gg    +  g+ls+      + ++   +g p +++g+++Gpf + a++++l ++l+++ +i+vRd  Sae+le++g ++  + ++D+a +
      KIR65405.1  84 MLVFGGG-SVFREMGPLSEK---KVFSLFSGVSGHPMAAVGVSVGPFVSAASERRLLRVLRRVAFIGVRDIASAEVLERAGYPGVLVPAGDLAgL 174
                     2777777.556667777777...88999999999999*********************************************999999*****76 PP

                     ....GG---HHHHHHS-........------------SS--EE---SSS---HH................................HH-TTS-HH CS
  PS_pyruv_trans 160 ....lleqlapseilet........dkrkylrvakssekdledleellakvydlllekgarllllpivkkdglelddlyllllra.aakkekvti 241
                         l e+ +p+++++t          ++ +++a+ + + +ed   + ++ + + +  + +++ ++ ++ +g+e++ ++l+   a  a +  v +
      KIR65405.1 175 lpeaLGEPVPPRRPRPTgrarlgvtLLGVDHEAADADVRRREDALVEGVRTLVRAEPVDVTVFVFNTHPLHGDERVGERLR---AaVAGHCDVRV 266
                     55555555556666655*****66655555555555555555555555566666555666666666666666666555555...44444445778 PP

                     HHHHHHHHHHHHHHHTSSEEEE--HHHHHHHHHHT--EEEE-- CS
  PS_pyruv_trans 242 ldrfaspeellsliaradfvitsRlHglifalsfgvPvigisy 284
                     ++   ++++  + ++r+d+   +RlHg++fa+++gvP+  + y
      KIR65405.1 267 VTARDGVRACWDEMKRCDLGLHMRLHGAVFAYLAGVPFTLVPY 309
                     9999**********************************99887 PP

>> Csm4_C  CRISPR Csm4 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   4.4e-05      0.39      32      62 ..      67      95 ..      62      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.4e-05
      Csm4_C 32 krsGfvssessaeqlkkkdvymfaeGSvfkk 62
                 r G+v +++ a  l+++++ +f  GSvf++
  KIR65405.1 67 DRAGWVLNKA-A-LLRRSTMLVFGGGSVFRE 95
                699****943.3.47**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2633.20
//
Query:       KIR65406.1  [L=265]
Description: hypothetical protein TK50_08270 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-37  125.7   0.0    1.3e-36  125.1   0.0    1.3  1  DUF4253   Domain of unknown function (DUF4253)


Domain annotation for each model (and alignments):
>> DUF4253  Domain of unknown function (DUF4253)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.0   7.1e-41   1.3e-36       1     109 []     157     265 .]     157     265 .] 0.99

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 7.1e-41
     DUF4253   1 rlllvpaersadilaylgwaGainyeltnedlvavlrsWeerygaelvgigfdtlelsvakppkteeealalAaEhyafCpdlvdqgvgtledlaealk 99 
                 rl+lvpa+ +ad++a+ gw+G++++  +  +l avl+sW+er+ga +vg+gfdtl+lsva+pp+t+e+al++AaEh afCpd+v qg g+l+++ae+++
  KIR65406.1 157 RLGLVPAAGGADAPAATGWTGPVHHLDSGGQLTAVLHSWAERFGALVVGVGFDTLHLSVAAPPTTPEHALRVAAEHLAFCPDNVRQGSGSLAAYAEEIR 255
                 589************************************************************************************************ PP

     DUF4253 100 kskawffwWD 109
                 + ++w+fwWD
  KIR65406.1 256 GMQSWSFWWD 265
                 *********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1871.46
//
Query:       KIR65407.1  [L=220]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-14   54.2   0.0    2.2e-14   53.5   0.0    1.3  1  Response_reg  Response regulator receiver domain
    3.8e-12   45.6   0.0    5.6e-12   45.0   0.0    1.3  1  GerE          Bacterial regulatory proteins, luxR family
    8.5e-07   28.5   0.1    1.7e-06   27.6   0.1    1.6  1  Sigma70_r4_2  Sigma-70, region 4
     0.0031   17.0   0.0     0.0059   16.1   0.0    1.4  1  Sigma70_r4    Sigma-70, region 4
     0.0055   16.5   0.3     0.0055   16.5   0.3    1.9  2  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
      0.053   13.3   0.0       0.11   12.3   0.0    1.5  1  HTH_38        Helix-turn-helix domain
      0.099   12.8   1.5       0.23   11.6   0.6    2.1  2  HTH_28        Helix-turn-helix domain
        1.4    9.0   5.4        0.9    9.6   0.2    2.9  3  HTH_29        Winged helix-turn helix


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0     1e-17   2.2e-14       1      93 [.       7     102 ..       7     120 .. 0.91

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 1e-17
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSS...SEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCT CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpg...mdGlellkeireedpelpviiltahseeedavealkag 93 
                   v++++D+ l+re+l  ll + g+e+va++ ++ ++ + ++++++dl+++Di+mp     dGl+++  +r   p l v++l+++ ++e+a + l+ g
    KIR65407.1   7 VVLAEDEVLLREGLVALLGRFGFEVVAAVGSAPALRDAVEAHRPDLLVTDIRMPPhhrDDGLRAAVALRGGRPGLAVVVLSQYVQSEYASALLDSG 102
                   789***************************************************75556*********************************9987 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   2.5e-15   5.6e-12       2      47 ..     153     198 ..     152     213 .. 0.92

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 2.5e-15
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT- CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnv 47 
                  L+ REr vL+l+aeG sn  IA++l++ e  V  h++ni+ KL++
  KIR65407.1 153 ALTARERAVLALVAEGHSNAAIAARLHVTEAAVGKHVGNILAKLDL 198
                 69******************************************86 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   7.8e-10   1.7e-06       8      54 .]     151     196 ..     148     196 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 7.8e-10
                   HTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   8 laeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   la+L+ r+r+++ l   eg+s + IA++l+++e++V +++   ++kL
    KIR65407.1 151 LAALTARERAVLAL-VAEGHSNAAIAARLHVTEAAVGKHVGNILAKL 196
                   799***********.79**********************99888887 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.6e-06    0.0059       2      48 ..     151     196 ..     151     197 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.6e-06
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 La L++rer vl l+  eg++ + I++rl++++ +V  +  + l kL
  KIR65407.1 151 LAALTARERAVLALVA-EGHSNAAIAARLHVTEAAVGKHVGNILAKL 196
                 899***********97.5559************99988887777776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.3   2.4e-06    0.0055       3      34 ..     155     185 ..     153     189 .. 0.86
   2 ?   -3.5   0.2       4.5     1e+04       6      17 ..     206     217 ..     206     217 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.4e-06
      HTH_23   3 sereRlrillllaeGlsvreIAreLgvsrrTv 34 
                 ++reR+ +l l+aeG+s ++IA++L+v++  v
  KIR65407.1 155 TARERA-VLALVAEGHSNAAIAARLHVTEAAV 185
                 567777.9999999**************9877 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.5
      HTH_23   6 eRlrillllaeG 17 
                 +R +++l++++G
  KIR65407.1 206 RRVLAVLAYLRG 217
                 688999999875 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.9e-05      0.11       6      33 ..     155     181 ..     153     189 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.9e-05
      HTH_38   6 sleeReeIerllaeGlslreIArrLgrs 33 
                 +  eR    +l aeG+s+++IA rL++ 
  KIR65407.1 155 TARER-AVLALVAEGHSNAAIAARLHVT 181
                 55666.456799*************986 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.6    0.0001      0.23       4      29 ..     159     185 ..     157     189 .. 0.79
   2 ?   -2.6   0.0       2.8   6.2e+03       2      13 ..     207     218 ..     206     219 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
      HTH_28   4 eiikl.laaGhsvreaArelgisrrtv 29 
                 +++++ +a+Ghs +++A++l++++  v
  KIR65407.1 159 RAVLAlVAEGHSNAAIAARLHVTEAAV 185
                 666552669*************98776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.8
      HTH_28   2 RleiikllaaGh 13 
                 R  +++++++G 
  KIR65407.1 207 RVLAVLAYLRGT 218
                 677999999996 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       4.5     1e+04      39      53 ..      66      79 ..      64      81 .. 0.50
   2 ?    1.5   0.1      0.14   3.2e+02      33      63 .]     125     160 ..     119     160 .. 0.61
   3 ?    9.6   0.2    0.0004       0.9       3      29 ..     160     185 ..     159     189 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.5
      HTH_29 39 gGlaalldrrrsgrp 53
                +Gl+a+   r +grp
  KIR65407.1 66 DGLRAAVALR-GGRP 79
                5666654432.3444 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.14
      HTH_29  33 lkrfeegG....laalld.rrrsgrprnrlseeqea 63 
                 l+r + gG    ++  ++  +r++ p   l+++++a
  KIR65407.1 125 LRRVVDGGtaidPDVVRHlLHRPRDPLAALTARERA 160
                 566666665533333566666667777778888876 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0004
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtv 29 
                 ++l+l+aeG+s  + iA++l +++  v
  KIR65407.1 160 AVLALVAEGHS-NAAIAARLHVTEAAV 185
                 689*******8.999999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1583.16
//
Query:       KIR65408.1  [L=436]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-11   45.1   8.3    3.5e-11   43.4   2.8    3.1  3  HisKA_3      Histidine kinase
    3.4e-11   43.4  28.8    3.4e-11   43.4  28.8    3.4  4  Sensor       Putative sensor
    8.9e-06   25.7   0.9    3.1e-05   23.9   0.6    2.1  1  HATPase_c_2  Histidine kinase-like ATPase domain
    0.00023   21.7   0.0    0.00055   20.4   0.0    1.6  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.13   5.8e+02      22      53 ..     211     244 ..     207     246 .. 0.81
   2 !   43.4   2.8   7.9e-15   3.5e-11       1      68 []     247     313 ..     247     313 .. 0.94
   3 ?    1.8   0.0      0.08   3.6e+02      37      58 ..     354     375 ..     332     382 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.13
                 HHHHHHHHHTTT-HH..HHHHHHHHHHHHHHHHH CS
     HisKA_3  22 lqlelakrllekdpe..kaaeqlreieelareal 53 
                  q+ +a+rll+ +p+  +a +++++ ++++ +a+
  KIR65408.1 211 GQATVARRLLAGPPAepAALREVTRSRARLVDAY 244
                 58999*****888887788888888888888887 PP

  == domain 2  score: 43.4 bits;  conditional E-value: 7.9e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLrpaal 68 
                 ER+ri R+ HD+ + +L+++++ql+la+  + +d+  aa+ l+ ++e+a+e +  +R++ + +rp++l
  KIR65408.1 247 ERRRIERDVHDGAQPRLTSLTVQLGLARLDV-PDDSPAARPLAVAHEQAKELMVTLRQIAQGIRPQQL 313
                 9***************************877.45579999*************************986 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.08
                 HHHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3  37 kaaeqlreieelarealqevRr 58 
                  + e+l++++++a+ a +evR 
  KIR65408.1 354 VVSEALANVASHADAAHAEVRL 375
                 6788999999999999999995 PP

>> Sensor  Putative sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6  16.2     0.028   1.3e+02      88     148 ..      25      89 ..       7      92 .. 0.67
   2 !   43.4  28.8   7.6e-15   3.4e-11      26     162 .]      71     220 ..      64     220 .. 0.83
   3 ?   -0.9   0.4      0.34   1.5e+03      46      69 ..     230     254 ..     228     271 .. 0.68
   4 ?   -1.8   0.1      0.63   2.8e+03      59      97 ..     336     374 ..     316     378 .. 0.53

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.028
      Sensor  88 wrdllylllhfplg..lvlfvvavvllalalalltaPlwt......lpeallvavlGlllllvllwvvr 148
                 wr+l+y+    p++  l+l+  +vv +a+a+ +++           lp ++++av+Gl+l++v++ v  
  KIR65408.1  25 WRALAYAGTTVPVAgvLALGLGVVVAPAVAVLNAV----RqgrpveLPVVVFLAVAGLALAAVAPLVSA 89 
                 99999999999998322222222222333333333....134444499***************999865 PP

  == domain 2  score: 43.4 bits;  conditional E-value: 7.6e-15
      Sensor  26 llvllvGlplLalalllarglaaveRrrarlllglpvprphrapep..pgllarlrallrdpatwrdllylllhfplg.lvlfvvavvllalalallta 121
                 + + + Gl+l a+a l+  ++a +eR+r+  ++ +p+p++    +p  + ++ +l a+ +d+a wr+++y+ + + +   +++++a vl +l l+ll++
  KIR65408.1  71 VFLAVAGLALAAVAPLVSAPVAGFERWRLGVVDSRPLPAR----RPfsGDVVGTLAARYTDAAAWREVAYACWLGAVVpAAYWTFA-VLALLDLTLLAS 164
                 455678********************************55....344599***********************9999634444444.446789****** PP

      Sensor 122 Plw...............tlpeallvavlGlllllvllwvvrglarlqallaraLL 162
                 P++               t+ ea+ +a+ ++l+l+vl++++++l + qa +ar+LL
  KIR65408.1 165 PWLvdgtndvvvvwttvdTPREAVPYAIGAALFLPVLWYLAGLLVAGQATVARRLL 220
                 **75887777777665554888888888888888*********************9 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.34
      Sensor  46 laaveRrrarlllglpvprph.rap 69 
                 l +v R+rarl++  +++r++ ++ 
  KIR65408.1 230 LREVTRSRARLVDAYEAERRRiERD 254
                 5689999999999999887765444 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.63
      Sensor  59 glpvprphrapeppgllarlrallrdpatwrdllylllh 97 
                 ++++prp ++p +++    + ++l++ a+  d++++ ++
  KIR65408.1 336 HADLPRPVPEPVETTAYYVVSEALANVASHADAAHAEVR 374
                 445555543333366666677777777777777776655 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.6     7e-09   3.1e-05      34      82 ..     353     398 ..     292     412 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 7e-09
  HATPase_c_2  34 laveEactNavehayleapegpvevrlesdeealtvevaDsGpg.fdpet 82 
                   +v+Ea++N+  ha      ++ evrl+++++ l+vev+D+G+g  dp+ 
   KIR65408.1 353 YVVSEALANVASHADA----AHAEVRLTQTDRHLVVEVEDDGRGgADPAR 398
                  589************8....67799*******************999986 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.7   1.6e+04      37      55 ..     296     314 ..     285     326 .. 0.64
   2 !   20.4   0.0   1.2e-07   0.00055       4      48 ..     349     392 ..     347     408 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.7
                 EEEEEEEESSSSSTTHHHT CS
   HATPase_c  37 dlvisveDnGiGipkedlk 55 
                 +l+++ +   +Gi +++l 
  KIR65408.1 296 ELMVTLRQIAQGIRPQQLT 314
                 5666666666666666654 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.2e-07
                 HHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSS CS
   HATPase_c   4 krLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiG 48 
                 +  + ++s+++ N + + ++a + ev++++++ +lv++veD+G+G
  KIR65408.1 349 TTAYYVVSEALANVASH-ADAAHAEVRLTQTDRHLVVEVEDDGRG 392
                 56789************.99*********8779***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3221.59
//
Query:       KIR65409.1  [L=277]
Description: hypothetical protein TK50_08290 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-17   63.3   0.8    6.6e-17   62.5   0.1    1.8  2  Methyltransf_24  Methyltransferase domain
    5.1e-06   26.3   0.0    1.1e-05   25.2   0.0    1.5  1  CmcI             Cephalosporin hydroxylase
  ------ inclusion threshold ------
      0.013   15.6   1.0      0.054   13.7   1.0    2.1  1  AbiEi_4          Transcriptional regulator, AbiEi antitoxin


Domain annotation for each model (and alignments):
>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.94   5.6e+03      69      69 ..      66      66 ..       9     115 .. 0.59
   2 !   62.5   0.1   1.1e-20   6.6e-17       1     105 [.     134     238 ..     134     239 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.94
  Methyltransf_24 69 s 69
                     +
       KIR65409.1 66 W 66
                     1 PP

  == domain 2  score: 62.5 bits;  conditional E-value: 1.1e-20
  Methyltransf_24   1 vEiGvysGvstlwllralrrnga....grlvavdhdpgaeeaaalareaglddrvrlikadseealaslaagsiDllfiDgghaaeavledlea 90 
                      vE Gv +G  +++l++al rn++    gr++++d +p   ea+ lar+a  + +v+l+++ds + ++ l+ +++Dl++ D +h+ ++++++++a
       KIR65409.1 134 VETGVDKGLGSCVLAAALLRNADeghpGRVTSLDINP---EAGYLARTAPWSGVVDLVVGDSVASIGALD-RPVDLFLHDSDHSRAHEKREFDA 223
                      8************************************...******************************.*********************** PP

  Methyltransf_24  91 llprlapggvvlfdD 105
                      ++p+lapg+++l d+
       KIR65409.1 224 VEPKLAPGALLLTDN 238
                      ************998 PP

>> CmcI  Cephalosporin hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.9e-09   1.1e-05      27     145 ..     124     236 ..     119     263 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.9e-09
        CmcI  27 liwelkPdliietGiahG.Gsalfsasllall..kskrkvlaididireknrqaieahplasrieliegssvdpeiveqvkslakekekvlvilDsdHt 122
                 ++  ++P  ++etG+  G Gs ++ a ll+++  ++ ++v ++di+  +      ++ p +  + l+ g+sv++     + +l ++ +  l   DsdH+
  KIR65409.1 124 MVRATRPAHVVETGVDKGlGSCVLAAALLRNAdeGHPGRVTSLDINPEA--GYLARTAPWSGVVDLVVGDSVAS-----IGALDRPVD--LFLHDSDHS 213
                 67789*************************99777899*******4433..3445556999********99864.....555555444..6678***** PP

        CmcI 123 hehvlaeLeayaplvsaGsYivv 145
                  +h  +e+ a +p + +G  ++ 
  KIR65409.1 214 RAHEKREFDAVEPKLAPGALLLT 236
                 **************999987653 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.0     9e-06     0.054      16      41 ..     100     125 ..      99     126 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9e-06
     AbiEi_4  16 treleaaGispsalrrLvrkGwLvrl 41 
                 t+e++++G+ ++ +r+++r+Gw   +
  KIR65409.1 100 TAEAARRGLADREVRYARRIGWYAMV 125
                 799*******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2177.49
//
Query:       KIR65410.1  [L=343]
Description: lipoprotein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-10   39.9   0.0    5.4e-10   39.2   0.0    1.3  1  Pollen_allerg_1  Pollen allergen
    5.6e-10   39.4   0.1    1.5e-09   38.0   0.1    1.8  1  DPBB_1           Lytic transglycolase


Domain annotation for each model (and alignments):
>> Pollen_allerg_1  Pollen allergen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0     6e-14   5.4e-10       2      76 ..     188     261 ..     187     263 .. 0.88

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 6e-14
  Pollen_allerg_1   2 rfkveggsnp.ylavlvenvggagdisaVevkqggsseWtpmsrnwGavWqlnssplkgplsfrvtssdgktlvad 76 
                      +f++++g    ++avlv   g    ++aVev+qg+s+ W++  r+  + W ++s++  gp s+rvt  +g+ ++a 
       KIR65410.1 188 TFRIKEGASRyWFAVLVADHG--NPLRAVEVRQGDSGGWRAAARQDYNYWLVESGAGPGPYSIRVTDVYGHRVTAG 261
                      89*****8866******4444..69*********99******************8667*********999998876 PP

>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.1   1.7e-13   1.5e-09       3      83 .]      84     175 ..      82     175 .. 0.82

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 1.7e-13
                 EEEEEE-CCC-TTSSB--TTS-EEE-SSS............-TT-EEEETT.--EEEEEEEE----STTECEEE-HHHHHHHT-TTTS-EEEEE CS
      DPBB_1   3 agsaslykdgtacGecyevkcltaahktl............plgtycrvls.gksvtVtitDrgpfppgrhiDLSkaAfeklakpraGvipVky 83 
                 +g+a++y++  a G c  +++   a++ +            + g    v   + +v V + D +p ++  h+DLS++Af+++a+p +G++ V+y
  KIR65410.1  84 KGKATFYDSKGAGGNCSYPSA--PANRLYvalgpteyaagaACGGHLDVTGpKGTVRVLVMDQCPECAPGHLDLSREAFARIADPVQGIVSVSY 175
                 588888888888888888888..67777778888888555533333555556899*************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2507.69
//
Query:       KIR65411.1  [L=183]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-09   37.6   0.1    2.7e-09   37.3   0.1    1.3  1  Acetyltransf_1   Acetyltransferase (GNAT) family
      3e-08   33.7   0.0    4.1e-08   33.2   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.5e-07   31.7   0.1    2.3e-07   31.1   0.1    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00079   19.3   0.0     0.0014   18.6   0.0    1.4  1  FR47             FR47-like protein
  ------ inclusion threshold ------
      0.034   14.2   0.2      0.083   13.0   0.2    1.9  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
       0.12   12.5   0.0       0.19   11.9   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   8.9e-13   2.7e-09      32     117 .]      59     144 ..      13     144 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 8.9e-13
                     TCEEEEEEETTEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETT.EHHHHHHHHHTTE CS
  Acetyltransf_1  32 aegllvaeedgeliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveed.ndaairlYeklGF 117
                     +++llv+++++++ + + +  + + +k + +++ +++V+p  +g+G+GsaL++++e+  r+ g ++  l+v++    +   +Y++lG+
      KIR65411.1  59 PDRLLVGYDGDRPQAVLVFADNRFdLKAHWCVLKRVMVHPGTQGRGYGSALMREAERLGRKLGREA--LHVTVRgGLGLEWFYTRLGY 144
                     4578888888888888888888889999********************************997766..5555565999999**99998 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.4e-11   4.1e-08      53     111 ..      90     149 ..      54     152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.4e-11
  Acetyltransf_10  53 hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYeklGFkavge 111
                       + +++V+p  +g+G+g+aL+ ++e+  +k g +  ++tv+     + fY +lG+++vg+
       KIR65411.1  90 VLKRVMVHPGTQGRGYGSALMREAERLGRKLGREAlHVTVRGGLGLEWFYTRLGYREVGR 149
                      78999**********************99999999**********************987 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.1   7.8e-11   2.3e-07      25      76 .]      89     146 ..      50     146 .. 0.65

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 7.8e-11
                     TCTEEEEE-GGGTTSSHHHHHHHHTT.....SEEEEE.EEEETHH..HHHH...HHHHTTEEE CS
  Acetyltransf_7  25 aeitrlaVdpeyrgkGiGraLleaae.....kgiile.qlelnae..kaik...fYeklGFee 76 
                     + ++r+ V+p  +g+G+G+aL++ ae      g +   ++++  +     +   fY +lG++e
      KIR65411.1  89 CVLKRVMVHPGTQGRGYGSALMREAErlgrkLG-REAlHVTV--RggL--GlewFYTRLGYRE 146
                     45666*****************95234333333.11223333..1221..2335*******86 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   4.6e-07    0.0014      23      79 ..      90     146 ..      77     150 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 4.6e-07
                 SEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  23 elgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfek 79 
                  l  + v+p  ++rG+gs l ++  +  ++ g ++l v+v +    + +y++lG+++
  KIR65411.1  90 VLKRVMVHPGTQGRGYGSALMREAERLGRKLGREALHVTVRGGLGLEWFYTRLGYRE 146
                 68889******************9999999*************************97 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   2.8e-05     0.083      75      99 ..      90     114 ..      41     147 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.8e-05
                     EEEEEEE-CCGTTS-HHHHHHHHHH CS
  Acetyltransf_9  75 gvtgVavapehrgrgvlskLlaral 99 
                      +  V+v+p  +grg+ s+L+++a 
      KIR65411.1  90 VLKRVMVHPGTQGRGYGSALMREAE 114
                     4567*****************9975 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.3e-05      0.19      20      49 ..      84     113 ..      63     125 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.3e-05
  Acetyltransf_CG  20 rkegvldfthTeVpeelrGkGiAkkLvkaa 49 
                       k +  ++  + V++  +G+G++++L+++a
       KIR65411.1  84 LKAHWCVLKRVMVHPGTQGRGYGSALMREA 113
                      5556788999******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1390.49
//
Query:       KIR65412.1  [L=193]
Description: pyridoxamine 5'-phosphate oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-08   32.8   0.0    9.8e-08   32.1   0.0    1.3  1  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
    0.00012   22.1   0.5    0.00019   21.5   0.5    1.3  1  Pyridox_ox_2    Pyridoxamine 5'-phosphate oxidase
  ------ inclusion threshold ------
      0.044   14.0   0.0       0.31   11.3   0.0    2.1  2  Alpha-amyl_C2   Alpha-amylase C-terminal beta-sheet domain


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   1.6e-11   9.8e-08       2      70 ..      13      79 ..      12      90 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1.6e-11
                    HHHHHHHHHHSSEEEEEEEETTSEEEEEEEEEEEETTTTEEEEEEETTSHHHHHHHHH-EEEEEEEETT CS
  Putative_PNPOx  2 deelreflaeskavvlATvdedGrPnvspvllkagdgrdgivfatnadsrklrnleenprvallfldde 70
                    d+ ++++l+++ a++l+ v+ dG+P  +pv + +  +   + fa+ + + k+r ++++p+v+++++ ++
      KIR65412.1 13 DPVAQTLLESPVAMRLGYVGLDGHPRTVPVAYLWNGEA--FQFASPTTAYKVRAIAAHPQVSFSVDTYS 79
                    567899***************************99999..*************************9988 PP

>> Pyridox_ox_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.5   3.1e-08   0.00019       5     138 ..      16     159 ..      12     161 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.1e-08
                   HHHHHHC-SEEEEEEEE.TTEEEEEEEEEEEETTEEEEEEETTSHCCHCCCT--.ECEEEEE....EEEEEE-SEGG.EEE.EEEEE..EEEEEEEE CS
  Pyridox_ox_2   5 ilalLdegevgrlafvd.dgepvilPvnyvvdgdslyfhgakgsrlaaalrgap.vcvvvte....vdglvlarsfn.sln.yrSVv..vrGraeev 91 
                   +  lL++    rl++v  dg+p  +Pv+y  +g+++ f + +++ +++a+ ++p v+++v      v + v a+    +++ y+ Vv  vrG+a+  
    KIR65412.1  16 AQTLLESPVAMRLGYVGlDGHPRTVPVAYLWNGEAFQFASPTTAYKVRAIAAHPqVSFSVDTysaeVRRKVAAQ-LGpTVSdYTPVVmlVRGTASIE 111
                   56788999999******99********************************88889999988665443333333.4667777988864479999988 PP

                   --HHHHHHHCCCHHHHHSTTT.GGCSB---CCCCCTEEEEEEEEEEEE CS
  Pyridox_ox_2  92 tdeeekaealellvekivpgr.wenlrpptrkelkatsvlrlkieevs 138
                    ++   + ++++ ++ ++ ++    +++++r+  +  +v+ +k+++v+
    KIR65412.1 112 VHPGVPDVHVKASWRMFADKSlAPGWEQQKRAHTTDMAVITIKPTHVT 159
                   788777777776666666666422344666777777888888888887 PP

>> Alpha-amyl_C2  Alpha-amylase C-terminal beta-sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.16   9.7e+02      25      53 ..      21      59 ..       3      62 .. 0.59
   2 ?   11.3   0.0   5.2e-05      0.31      18      39 ..      76      99 ..      71     112 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.16
  Alpha-amyl_C2 25 deklivKiGpr..dwsPs........ggtkwklaasGdd 53
                   +  +++++G    d  P+        +g+ +++a   + 
     KIR65412.1 21 ESPVAMRLGYVglDGHPRtvpvaylwNGEAFQFASPTTA 59
                   556999999875644444444455555556666555555 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 5.2e-05
  Alpha-amyl_C2 18 dlYaAeideklivKiGpr..dwsP 39
                   d Y Ae+++k++  +Gp+  d+ P
     KIR65412.1 76 DTYSAEVRRKVAAQLGPTvsDYTP 99
                   89***************9988888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1368.18
//
Query:       KIR65413.1  [L=158]
Description: peroxiredoxin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-37  127.3   0.0    3.4e-37  127.1   0.0    1.1  1  AhpC-TSA    AhpC/TSA family
      4e-25   88.2   0.0    4.6e-25   88.1   0.0    1.1  1  Redoxin     Redoxin
    7.6e-05   22.8   0.0    0.00021   21.4   0.0    1.7  1  AhpC-TSA_2  AhpC/TSA antioxidant enzyme
     0.0015   18.1   0.0     0.0018   17.9   0.0    1.1  1  DUF899      Bacterial protein of unknown function (DUF899)


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.1   0.0   7.6e-41   3.4e-37       2     122 ..      10     136 ..       9     138 .. 0.98

  Alignments for each domain:
  == domain 1  score: 127.1 bits;  conditional E-value: 7.6e-41
                 TSB----EEESTTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHHHHTT- CS
    AhpC-TSA   2 gdkapdfelknadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsDeegkvakaygv 100
                 gd+ap+f+l++  get sl+d++g+ v+l+ yp++ +p+Ct++++++++ +  ++++g+ev+g+s+d+pe+++kf e++ ++fpl++D++++v +ayg+
  KIR65413.1  10 GDPAPEFSLPTDTGETLSLADLRGRTVILYAYPAAMTPGCTKQACDFRDSLASLRSAGYEVVGISPDKPEKLAKFRERDAITFPLVADTDRAVLTAYGA 108
                 9************************************************************************************************** PP

                 EETT......TTECSCEEEEE-TTSBEE CS
    AhpC-TSA 101 lkee......kglalratfvidkegkir 122
                 + e+       ++ +r+tfvid++gki+
  KIR65413.1 109 YGEKqsygrtVTGVIRSTFVIDPDGKIE 136
                 *********9999**************7 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.0     1e-28   4.6e-25       2     133 ..       9     141 ..       8     155 .. 0.89

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 1e-28
                 TTSBB---ECCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHH.HHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHHTT-TSEEEE-TTSHHHH CS
     Redoxin   2 agdkaPdftlplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehp.yleklaellkekgvdvvavvadndafvkefwgkeglkfpvlsDgsaaftk 99 
                 +gd+aP+f+lp+  + g+++sl++++g++v+++++p+a +P C+++++ + + la l ++ g +vv+++ d+ +   +f +++ ++fp+++D + a+  
  KIR65413.1   9 PGDPAPEFSLPT--DTGETLSLADLRGRTVILYAYPAAMTPGCTKQACdFRDSLASL-RSAGYEVVGISPDKPEKLAKFRERDAITFPLVADTDRAVLT 104
                 79********88..**********************************666677888.***************************************** PP

                 HTT-TTEEE.GGG....EEE-EEEEEEETTEEEEEEES CS
     Redoxin 100 alGlrleedaseg....lrtpryavidedgkvvyleve 133
                 a+G++  e++s g      +++++vid dgk+    + 
  KIR65413.1 105 AYGAY-GEKQSYGrtvtGVIRSTFVIDPDGKIERALYN 141
                 ***88.6666777799999************9765554 PP

>> AhpC-TSA_2  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   4.7e-08   0.00021       3      54 ..      57     109 ..      55     151 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 4.7e-08
  AhpC-TSA_2   3 srdkpeldaagvklvaigigdp.sakkFvkltgfpfelyvDpsaklyqalglk 54 
                 ++++++l++ag ++v+i+ ++p ++ kF+++  + f+l++D ++++  a g +
  KIR65413.1  57 RDSLASLRSAGYEVVGISPDKPeKLAKFRERDAITFPLVADTDRAVLTAYGAY 109
                 5567899***************55*********************99998887 PP

>> DUF899  Bacterial protein of unknown function (DUF899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.9e-07    0.0018      83     171 ..      44     135 ..      20     151 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.9e-07
      DUF899  83 egCpgCslladhvdgalahLeardvtlavvsraplekleaykrrmGwtlpwvssaesdfnrdfnvsleeeqaseelpgl..svflrdd.grv 171
                 +  pgC+  a ++  +la L++++  ++ +s    ekl+++++r   t+p+v++++  + + +++  e++++ + + g+  s+f+ d  g++
  KIR65413.1  44 AMTPGCTKQACDFRDSLASLRSAGYEVVGISPDKPEKLAKFRERDAITFPLVADTDRAVLTAYGAYGEKQSYGRTVTGVirSTFVIDPdGKI 135
                 5569*************************************************************999999999999887788888765777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1213.06
//
Query:       KIR65414.1  [L=239]
Description: cobalamin biosynthesis protein CbiM [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-55  186.4  28.3    6.2e-55  186.2  28.3    1.0  1  CbiM         Cobalt uptake substrate-specific transmembrane r
  ------ inclusion threshold ------
        2.6    8.1  26.5        1.3    9.1  22.8    1.9  2  ECF_trnsprt  ECF transporter, substrate-specific component


Domain annotation for each model (and alignments):
>> CbiM  Cobalt uptake substrate-specific transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.2  28.3   6.9e-59   6.2e-55       1     207 []       7     216 ..       7     216 .. 0.96

  Alignments for each domain:
  == domain 1  score: 186.2 bits;  conditional E-value: 6.9e-59
        CbiM   1 HipdgiLspavllaayavalallalalrrlrkeldearvpllallaafifaaqminipip.ggtslHllgavlaaiLlGpwaaflavavvlllqallfg 98 
                 Hi++gi++ +v+++++a ala+l l++ r r++ld++ +p+++l+aafifa+qm+n+pi+  g+s+Hllg++laa+L+Gpw+++l+vavvl++qal+fg
  KIR65414.1   7 HISNGIVNGPVAAVFAAFALAVLTLCVLRGRRDLDDRLAPMAGLVAAFIFAVQMLNFPIFtAGVSGHLLGGALAALLVGPWVGALCVAVVLVVQALVFG 105
                 ************************************************************999************************************ PP

        CbiM  99 dGGitaLGaNilnmavigvllaylvyrllsrla.sskkrvalaaflaallsvvlaallvalelalsgleas..lsltaalaamllvhlpvgilEgviTa 194
                 dGG+ +LG+N+ nmav+g ++ayl+  ll r + ++ + +a++af++al+svv+a+  ++l+++l g++ +   +l+ ++ +m+ vhl++gi+Eg+iTa
  KIR65414.1 106 DGGVAMLGLNVTNMAVLGTAAAYLLIALLLRVLpRTPAGLAVTAFVSALVSVVVASQGFVLQYWLGGTT-DlgGNLAGLAGTMAGVHLLIGIGEGLITA 203
                 ***********************777767677778899****************************664.335999*********************** PP

        CbiM 195 aivkalkkvrpel 207
                   v  ++kvrp+l
  KIR65414.1 204 TTVVTVAKVRPDL 216
                 ***********97 PP

>> ECF_trnsprt  ECF transporter, substrate-specific component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1     0.076   6.8e+02      40      62 ..      11      33 ..       3      40 .. 0.73
   2 ?    9.1  22.8   0.00015       1.3       5     166 ..      47     208 ..      44     212 .. 0.61

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.076
                 HHCTTCHHHHHHHHHHHHHHHHC CS
  ECF_trnsprt 40 gllfGpikGailgiitsvlkail 62
                 g++ Gp++++++++   vl++ +
   KIR65414.1 11 GIVNGPVAAVFAAFALAVLTLCV 33
                 67778888888888777776655 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00015
                  HHHHHHHHHHHHHHHHEEE.STS..EEESHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCHT-SSTTHHHH.....HHHHHHHHCHHHHHHHHHHCCC CS
  ECF_trnsprt   5 itglliAisivlsllgyiplpni..kitiihipvllggllfGpikGailgiitsvlkailtggtgalssfv.....piaflsriligliagllykkgk 95 
                  ++gl +A ++ ++   ++++p++   ++   +  +l++ll+Gp++Ga++ ++  v++a+++g +g +++++     ++   +++++ lia ll+    
   KIR65414.1  47 MAGLVAAFIFAVQ---MLNFPIFtaGVSGHLLGGALAALLVGPWVGALCVAVVLVVQALVFGDGG-VAMLGlnvtnMAVLGTAAAYLLIALLLR---- 136
                  5788999999888...7777766546788888899*************************86655.6666756554444444444444444444.... PP

                  HTTHHHHHHHHHHHHCCCCCHHHHH....HHCCCHHHHS.............--HHHHHHHHHCCTTCCHHHHHH CS
  ECF_trnsprt  96 kknlkeivvsfilagvlgtivatll....vlliilplylklktakaiaiagkallaailgpiivkglieaiiaai 166
                   ++     ++++++++++++v +++    ++l  ++   ++ + +  ++ag ++ ++ l++ i +gli+a   + 
   KIR65414.1 137 -VLPR-TPAGLAVTAFVSALVSVVVasqgFVLQYWLGGTTDLGGNLAGLAG-TMAGVHLLIGIGEGLITATTVVT 208
                  .3332.255555555555555555411114444444444555555555555.45555555566666665554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 1852.57
//
Query:       KIR65415.1  [L=148]
Description: cobalamin biosynthesis protein CbiM [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-22   77.0   0.1    1.1e-21   76.5   0.1    1.2  1  PDGLE     PDGLE domain
  ------ inclusion threshold ------
       0.06   13.2   0.0        6.2    6.7   0.0    2.2  2  DUF4307   Domain of unknown function (DUF4307)


Domain annotation for each model (and alignments):
>> PDGLE  PDGLE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.1   1.2e-25   1.1e-21       2      89 .]      15     105 ..      14     105 .. 0.96

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 1.2e-25
       PDGLE   2 aalliggvlswfASanPdGLEwsiekv.agtaelea.sgdlhealaeiqek.talLpDYsfkgaeekkagtsvAgivGvlltlalagligf 89 
                 +all++gv+s +AS++PdGL++s  k  +  ae e   g++ +++++ +e  +++L+DY+++g +++ ++t+++g++Gvllt+a+ g++++
  KIR65415.1  15 VALLLAGVVSNYASSHPDGLDSSLLKGcTVDAEGEItGGSCPAQQERDHELaDSPLADYGVRGLDNDFLSTGLSGVLGVLLTFAVGGGVFW 105
                 8**************************99999****8888999999999999***********************************9986 PP

>> DUF4307  Domain of unknown function (DUF4307)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0034        30       2      30 ..       4      32 ..       3      49 .. 0.71
   2 ?    6.7   0.0   0.00069       6.2       7      40 ..      90     123 ..      84     129 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0034
     DUF4307  2 rrllvillvvlvvvalalvawigysqgsa 30
                r++ +i++++lv+++la+v+  + s+  +
  KIR65415.1  4 RPWGFIVGGLLVALLLAGVVSNYASSHPD 32
                77889999999999988888766555544 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00069
     DUF4307   7 illvvlvvvalalvawigysqgsadvsaevvgfe 40 
                 +l+v+l+ +++++v w++ ++g ++ +a v g e
  KIR65415.1  90 VLGVLLTFAVGGGVFWLLRRRGPQPPTADVSGGE 123
                 78999999*****************999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1241.28
//
Query:       KIR65416.1  [L=256]
Description: cobalt ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-30  103.9   6.8    1.1e-29  103.6   6.8    1.1  1  CbiQ      Cobalt transport protein


Domain annotation for each model (and alignments):
>> CbiQ  Cobalt transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   6.8   6.2e-34   1.1e-29       3     211 ..      15     218 ..      13     223 .. 0.84

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 6.2e-34
                 CCCCS-HHHHHHHHHHHHHHHHHS-H..HHHHHHHHHHHHHHHHTTS---..HHHHHHHCCCHCHHHHHHHHHHE.......EECTTEEE...E-TTHH CS
        CbiQ   3 svlhrldprvkliwlfllllalvlap..nlvtlliiiallllllllvilp..rvlaqalilpllflllgllillfqlittegefvfagggqisitseGl 97 
                 s+ hrl+p+vk +++ l++la+v  p  ++++ +  + l+ ++++l+ +   ++l++a+i    ++++ + ++l  + ++ + + +ag+    +  +Gl
  KIR65416.1  15 SPVHRLPPEVKIAAMVLFTLAVVATPrtAFWAFGGYALLVAAVAALARVGpgWLLSRAAI-E--LPFVLFAVALP-FLGAGERVEVAGLA---LSVDGL 106
                 789***********9999999999872245666655555555555555556567776666.3..33333333333.35777888888888...999*** PP

                 HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHCCCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS..SHHHHHHHHHHHHHHHHHHHHHH CS
        CbiQ  98 lrglllalRiltllslllllalTTppeeltsslerlgvPlelalillLayRfiflLleevqrikqAqklRlgdsklgirrslrslgkliaalflralkr 196
                 l g +++ + +  +++ llla+TT+  +l+ +l rl+ P+ ++ i++ ++R++ +L+ e++r++ A+ +R+ d   ++ ++lr  +  ++alflra++r
  KIR65416.1 107 LGGWNIVAKGTLGVLASLLLAATTTTRDLIVGLDRLRCPQIVTQIATFMLRYLDVLVGEARRMRVARVSRGDDP--RFLWQLRGFAAGVGALFLRAFER 203
                 **************************************************************************..*********************** PP

                 HHHHHHHHHTTS-SS CS
        CbiQ 197 aervalAmeaRGYtg 211
                 +erv+lAm +RGY+g
  KIR65416.1 204 GERVYLAMLSRGYSG 218
                 **************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2150.13
//
Query:       KIR65417.1  [L=252]
Description: cobalt ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-29  101.6   0.0    5.9e-29  101.3   0.0    1.1  1  ABC_tran      ABC transporter
    9.3e-12   45.4   2.7    5.3e-08   33.0   0.1    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    0.00019   21.0   0.0      0.015   14.7   0.0    2.1  1  SMC_N         RecF/RecN/SMC N terminal domain
    0.00048   19.8   1.3     0.0015   18.2   1.3    1.9  1  AAA_25        AAA domain
      0.002   18.5   0.5     0.0033   17.8   0.5    1.5  1  AAA_16        AAA ATPase domain
      0.004   16.9   0.1     0.0074   16.0   0.1    1.4  1  AAA_29        P-loop containing region of AAA domain
     0.0065   16.6   0.0      0.019   15.1   0.0    1.7  1  AAA_33        AAA domain
  ------ inclusion threshold ------
       0.02   14.8   0.1       0.04   13.8   0.1    1.6  2  NTPase_1      NTPase
      0.022   15.2   0.0      0.031   14.8   0.0    1.1  1  AAA_23        AAA domain
      0.024   14.0   0.3      0.046   13.1   0.3    1.4  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.032   13.9   0.7      0.046   13.4   0.7    1.5  1  AAA_30        AAA domain
      0.036   14.0   0.1      0.065   13.1   0.1    1.4  1  RsgA_GTPase   RsgA GTPase
      0.043   13.6   0.0       0.45   10.2   0.0    2.0  2  IstB_IS21     IstB-like ATP binding protein
      0.063   13.0   0.0      0.085   12.6   0.0    1.2  1  AAA_24        AAA domain
      0.071   13.4   0.1       0.16   12.2   0.1    1.7  1  AAA_28        AAA domain
       0.11   11.2   0.0       0.15   10.9   0.0    1.2  1  DLIC          Dynein light intermediate chain (DLIC)
       0.12   12.3   0.2       0.41   10.5   0.1    1.8  2  NACHT         NACHT domain
       0.15   12.1   0.2       0.45   10.5   0.1    1.9  2  AAA_5         AAA domain (dynein-related subfamily)
       0.22   11.1   0.0       0.36   10.4   0.0    1.3  1  SRP54         SRP54-type protein, GTPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.0   6.2e-32   5.9e-29       1     136 [.      29     176 ..      29     177 .. 0.94

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 6.2e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS..--S-TTSBHHHH.............HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx..xxxxxxxxxxxx.............xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqe..pqlfpeltvren.............esd 82 
                 l+ v+l++ +ge+va++G+nGaGK+tL+  l g l+ +eG++ + g  +++  ++l + r+++g+++q+  +qlf  + v+e              e  
  KIR65417.1  29 LHGVDLTVARGERVALLGPNGAGKTTLVLHLNGILTAAEGSVSVGGLTVSRdrDTLAEIRRRVGIVFQDpdDQLFLPT-VAEDvafgpanlglrgaELA 126
                 6899*****************************************9999988999**************777777777.78888*************** PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +++++al+ +g+ e +d+      ++LS Gq++rva+a +l+ +p++l+lDEp+
  KIR65417.1 127 ARVDEALAAVGMGEHRDRAP----HHLSFGQRRRVAVATVLAMHPEILVLDEPS 176
                 **************888887....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.3   9.9e-05     0.094       3      25 ..      43      65 ..      42     103 .. 0.73
   2 !   33.0   0.1   5.6e-11   5.3e-08     229     301 ..     141     208 ..     121     210 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.9e-05
      AAA_21  3 vliGpNgsGKSnLLdaldllarl 25
                +l GpNg+GK++L   l ++  +
  KIR65417.1 43 ALLGPNGAGKTTLVLHLNGILTA 65
                799**********8888777443 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 5.6e-11
      AAA_21 229 gqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS.pll 301
                  +++ +++lS G++r  a++t l+  +    +l++DEp ++L+P++ r+l+e+l+ l    + ++++TH+ p+ 
  KIR65417.1 141 HRDRAPHHLSFGQRRRVAVATVLAMHP---EILVLDEPSSNLDPAARRELAEILRGL---PVTLLMVTHDlPYA 208
                 567889**********9*****99977...9********************999444...699******97775 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.6e-05     0.015      28     185 ..      43     193 ..      32     210 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.6e-05
                 EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevse 125
                 a++GpNG+GK+ l+  +  +L  ++     s ++  l  +  ++  +  + +v i+f+++d++l   +       + +  g  +  + g e   + v e
  KIR65417.1  43 ALLGPNGAGKTTLVLHLNGILTAAEG----SVSVGGLTVSrDRDTLAEIRRRVGIVFQDPDDQLFLPTVA-----EDVAFGPANLGLRGAELA-ARVDE 131
                 66777777777777777777765444....4445555444233444445566777777777773332222.....222222333334443332.34455 PP

                 HHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH CS
                 xxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 126 llesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke 185
                  l+ +g+ ++       LS G++  va+a ++A++      + +lDe  ++LD + ++++ae+l+ 
  KIR65417.1 132 ALAAVGMGEHrdraphHLSFGQRRRVAVATVLAMHP----EILVLDEPSSNLDPAARRELAEILRG 193
                 55555554444444549****************985....3889******************9986 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   1.3   1.6e-06    0.0015      30     108 ..      36     107 ..      28     201 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.6e-06
      AAA_25  30 lpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEds.edelrrRlravgealrddarllvldl 108
                 +++ge ++l G+ g+GKttl+l+l   ++  +   g+     +  l vs + +  +e+rrR+  v+++   d++l++ ++
  KIR65417.1  36 VARGERVALLGPNGAGKTTLVLHLNGILTAAE---GS---VSVGGLTVSRDRDtLAEIRRRVGIVFQDP--DDQLFLPTV 107
                 689*********************88887555...42...56778888888775779999999999985..344433332 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.5   3.5e-06    0.0033      21      88 ..      38      97 ..      28     241 .. 0.54

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.5e-06
      AAA_16 21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde 88
                +g  e v l G+ G GK++lv +l   l++++g +  g  + +   + +++la++    + +  + ++
  KIR65417.1 38 RG--ERVALLGPNGAGKTTLVLHLNGILTAAEGSVSVGGLTVS---RDRDTLAEIR---RRVGIVFQD 97
                44..7899*************9999888888555544444444...1112223333...222222222 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   7.8e-06    0.0074      13      48 ..      30      65 ..      27      71 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.8e-06
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllDAiqalLvp 48
                +g ++++ + + + l Gp+G+GK+Tl+  ++ +L++
  KIR65417.1 30 HGVDLTVARGERVALLGPNGAGKTTLVLHLNGILTA 65
                6677788866699*************9666666665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     2e-05     0.019       3     105 ..      43     202 ..      42     210 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2e-05
      AAA_33   3 llvGlpGsGKstlaerl....lkklg.....avllssdt.................................................lrrrlfgtdqq 43 
                  l G++G+GK+tl+ +l     +++g     + ++s d                                                  +  + +g +++
  KIR65417.1  43 ALLGPNGAGKTTLVLHLngilTAAEGsvsvgGLTVSRDRdtlaeirrrvgivfqdpddqlflptvaedvafgpanlglrgaelaarvdEALAAVGMGEH 141
                 578*************9776533333788888999999999**99999999999999999999999999999999998888877776544444446666 PP

      AAA_33  44 sktdytrvldrlyqilnelarkalsagrnvildat..nlsrrerarflklarrlgvpvrivvve 105
                 +++ + ++++  ++++ ++a+  + +   ++ld +  nl++++r+++ +++r  g pv+++ v+
  KIR65417.1 142 RDRAPHHLSFGQRRRV-AVATVLAMHPEILVLDEPssNLDPAARRELAEILR--GLPVTLLMVT 202
                 7778889999999998.89988888888899999999999***********9..6666655554 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   4.3e-05      0.04       2      47 ..      42      89 ..      41     117 .. 0.81
   2 ?   -2.0   0.0         3   2.9e+03      94     103 ..     165     174 ..     108     209 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.3e-05
                EEEE--TTSSHHHHHHHHHHHH.....GGGEEEEEEEEE-------EE CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkss..gvkvgGfyteevreggrrigF 47
                v++ Gp G GKtTlv  +   l      v+vgG+ +++ r++   i  
  KIR65417.1 42 VALLGPNGAGKTTLVLHLNGILTAAegSVSVGGLTVSRDRDTLAEIRR 89
                7899*************99988765336999**999988866555544 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3
                 HHH-EEEE-- CS
    NTPase_1  94 seadviviDE 103
                  +++++v+DE
  KIR65417.1 165 MHPEILVLDE 174
                 3455555555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.2e-05     0.031      23      45 ..      43      65 ..      40     101 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.2e-05
      AAA_23 23 lItGpNGaGKTTildAiklaLyg 45
                ++ GpNGaGKTT++  +  +L+ 
  KIR65417.1 43 ALLGPNGAGKTTLVLHLNGILTA 65
                578**********9888887775 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   4.9e-05     0.046      14      50 ..      31      67 ..      24      79 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.9e-05
  Mg_chelatase 14 aleiaaaGgHnlllvGppGsGKtmlakrlpsllppls 50
                   +++++a g  + l+Gp G+GKt l   l+++l++ +
    KIR65417.1 31 GVDLTVARGERVALLGPNGAGKTTLVLHLNGILTAAE 67
                  567788889999*********************8765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.7   4.9e-05     0.046      20      51 ..      41      72 ..      31     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.9e-05
      AAA_30 20 vavltGpAGtGKttalkalreaweaaggrvig 51
                 ++l Gp G+GKtt++ +l+ +++aa+g+v +
  KIR65417.1 41 RVALLGPNGAGKTTLVLHLNGILTAAEGSVSV 72
                46789*******************99655543 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   6.9e-05     0.065      98     131 ..      38      71 ..      28      82 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.9e-05
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktgevs 131
                  +++ ++l+G+ G+GK+tL+ +l++ l+++ g+vs
   KIR65417.1  38 RGERVALLGPNGAGKTTLVLHLNGILTAAEGSVS 71 
                  568899****************999888888887 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00048      0.45      44      67 ..      36      59 ..      14      82 .. 0.84
   2 ?    1.1   0.0       0.3   2.8e+02     106     135 ..     164     192 ..     147     208 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00048
   IstB_IS21 44 iekkenivllGpsGvGKshlaial 67
                +++ e ++llGp G+GK+ l   l
  KIR65417.1 36 VARGERVALLGPNGAGKTTLVLHL 59
                67899*************998766 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.3
   IstB_IS21 106 llkvdllilDdlgllpldqaeaellfevie 135
                  +++++l+lD+ +  +ld a++++l e++ 
  KIR65417.1 164 AMHPEILVLDEPS-SNLDPAARRELAEILR 192
                 46779******76.6899999999999986 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     9e-05     0.085       3      24 ..      40      60 ..      38      79 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9e-05
      AAA_24  3 lkiliyGpsgiGKTtlakelgp 24
                 ++++ Gp+g+GKTtl+++l +
  KIR65417.1 40 ERVALLGPNGAGKTTLVLHL-N 60
                689**************999.3 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00017      0.16       1      20 [.      41      60 ..      41      91 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00017
      AAA_28  1 kivitGgestGKTtlleaLa 20
                +++++G+ ++GKTtl+ +L+
  KIR65417.1 41 RVALLGPNGAGKTTLVLHLN 60
                799*************9997 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00016      0.15      25      55 ..      39      69 ..      34     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
        DLIC 25 gksvlvlGedgsGkttliaklqGveeekkGr 55
                g  v +lG +g+Gkttl+  l G+     G+
  KIR65417.1 39 GERVALLGPNGAGKTTLVLHLNGILTAAEGS 69
                67899******************98888776 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00044      0.41       2      20 ..      41      59 ..      40      71 .. 0.85
   2 ?   -1.0   0.0       1.6   1.5e+03      90     126 ..     172     202 ..     148     204 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00044
                CEEEEC-TTTCHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkl 20
                 v+l G++G GKTtL+ +l
  KIR65417.1 41 RVALLGPNGAGKTTLVLHL 59
                689************9887 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
                 STT-SS-TCH.........HHHHHCTTTTT--EEEEE CS
       NACHT  90 lDelvtdlgqkekqpvrtlLselirkkllpeaslllt 126
                 lDe ++ l++    ++r+ L+e++r+  lp + l++t
  KIR65417.1 172 LDEPSSNLDP----AARRELAEILRG--LPVTLLMVT 202
                 5777887777....778888888888..888888777 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00048      0.45       2      23 ..      42      63 ..      41      86 .. 0.87
   2 ?   -2.0   0.0       3.5   3.3e+03      62      73 ..     163     174 ..     145     194 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00048
                EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5  2 vlLvGppGtgKselaerlaaal 23
                v L+Gp G gK++l+ +l   l
  KIR65417.1 42 VALLGPNGAGKTTLVLHLNGIL 63
                679**************98877 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.5
                 ---G-SEEEEES CS
       AAA_5  62 aaregeilvlDE 73 
                  a ++eilvlDE
  KIR65417.1 163 LAMHPEILVLDE 174
                 344788888888 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00039      0.36       4      32 ..      42      70 ..      40      93 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00039
                EEEEESTTSSHHHHHHHHHHHHHHTTS-E CS
       SRP54  4 illvGlqGaGKTttlaKLaallkkegkkv 32
                ++l+G++GaGKTt +  L  +l++ + +v
  KIR65417.1 42 VALLGPNGAGKTTLVLHLNGILTAAEGSV 70
                689***********999988888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 1947.01
//
Query:       KIR65418.1  [L=238]
Description: DSBA oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-25   88.9   0.0      5e-25   88.6   0.0    1.1  1  Thioredoxin_4  Thioredoxin
    2.2e-11   43.9   0.1    6.7e-07   29.3   0.0    2.2  2  DSBA           DSBA-like thioredoxin domain
  ------ inclusion threshold ------
      0.054   13.8   0.3      0.054   13.8   0.3    2.1  2  RskA           Anti-sigma-K factor rskA


Domain annotation for each model (and alignments):
>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.0   8.3e-29     5e-25      13     164 ..      75     233 ..      65     235 .. 0.85

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 8.3e-29
                    -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHHHTTSEEEEEEE-......---STTTHHHHHHHTT--TTHHHHHHHHHHHHTHHHHTTS-.....H CS
  Thioredoxin_4  13 ApvtvieyedlrCphCakfeeeveklleeyidtGkvkfiirdf....pldkekeslkaamaarcageespeaflaikallysqqeewaes.....l 99 
                     pvt+++yed+ Cp C +f++++++++ + +++Gk +++++++     + + ++s++ + a++ca++ + ++ +++kal+ +q +e  +      l
     KIR65418.1  75 GPVTIDLYEDFLCPACNQFQQTSGATIDQLVSEGKARVVFHPVaylnRFSTTEYSTRSSAASGCAAKGG-KFQEYAKALFAKQPPEGGAGlsddeL 169
                    59*****************************************86654556669************999.66677777777777777777543333 PP

                    HHHH.....HHHHHTS-------HHHHHHHHHHHHHHT--SS-EEEETTEEE-TT--HHHHHHHH CS
  Thioredoxin_4 100 kelaaealdkdekfeacleeekldalveaeskeakkagiestPtfiingekveepqtyeelkali 164
                     ++ a  + ++ +f +c+++++++a+ e    +a +ag+++tPt+ +ng  v+   +++ l+a++
     KIR65418.1 170 VDIGAGVGLNRDDFASCVSDGTYKAWTEHVTDDASRAGVTGTPTVKVNGAEVA-DRSPAGLTAAV 233
                    3366779999******************************************8.77888887776 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.5e-05     0.087       1      37 [.      78     117 ..      78     122 .. 0.88
   2 !   29.3   0.0   1.1e-10   6.7e-07      86     176 ..     129     219 ..     120     228 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.5e-05
                 EEEEEEBTTBHHHHHHHHHHHHHHHHC...CTEEEEEEE- CS
        DSBA   1 tvdeffDvlCPyCylgkerleklaars...pdvkvvlrpf 37 
                 t+d++ D+lCP C ++++   + + +     +++vv++p+
  KIR65418.1  78 TIDLYEDFLCPACNQFQQTSGATIDQLvseGKARVVFHPV 117
                 79****************9888888888866799999997 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 1.1e-10
                 HHHHHHHHHHHHHHHGHHHHHHHHHHHHHTSSS-TSSHHHHHHHHHHTTS.HHHHHHHHTSHHHHHHHHHHHHHHHHTT-SSSSEEEETTC CS
        DSBA  86 straarlllaagaeglaekvvrelfealwsegqaitddqellevaekaGldaeeldealeseavkeavrentaaaqslgvtGvPtvvvdgk 176
                 str  ++   a++ g+ ++++++lf +   eg a  +d+el+++   +Gl++++++  ++++ +k   +  t+ a + gvtG+Ptv v+g 
  KIR65418.1 129 STRSSAASGCAAKGGKFQEYAKALFAKQPPEGGAGLSDDELVDIGAGVGLNRDDFASCVSDGTYKAWTEHVTDDASRAGVTGTPTVKVNGA 219
                 6666667777788889999999999999999999999999************************************************997 PP

>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3     9e-06     0.054      27      79 ..      13      68 ..       2     118 .. 0.55
   2 ?   -0.1   0.9      0.17     1e+03      24      49 ..     210     235 ..     188     237 .. 0.43

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9e-06
                .....................XXXXXXXXXXXXXX..........XXXXXXXXXXXXX CS
        RskA 27 aaapppaaapaararr.....laaaaAaalllvlgqlavasaaldplrqsaaqaeavv 79
                  +++ a++++++  r     l+a+a+++++ ++g+ + +s+  d+  +++ ++ea +
  KIR65418.1 13 VVREQLARERRRK--RtlwtsLVAVAVLVIAGGIGWAVWSSQRSDTFTAPPGANEAGT 68
                2222222222222..2333445555555555666688888888888888877777655 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.17
                 .......................XXXXXXX CS
        RskA  24 aaaaaapppaaapaararr....laaaaAa 49 
                 ++++     a+ +     r    l+aa+Aa
  KIR65418.1 210 GTPTVKVNGAEVAD----RspagLTAAVAA 235
                 22222222222222....133333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       804  (0.0448435); expected 358.6 (0.02)
Passed bias filter:                      648  (0.0361426); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1661.69
//
Query:       KIR65419.1  [L=173]
Description: DoxX family protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-11   43.3   6.0    4.2e-11   42.9   6.0    1.3  1  MauE      Methylamine utilisation protein MauE
    5.6e-06   26.9  13.2    1.1e-05   25.9  13.2    1.5  1  DoxX      DoxX


Domain annotation for each model (and alignments):
>> MauE  Methylamine utilisation protein MauE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   6.0   4.7e-15   4.2e-11      14     112 ..      25     122 ..      12     159 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 4.7e-15
        MauE  14 rlflalllaaaaipklrhveefyGvvrnfrllPellarpvalvlPlvelavavglvvppaaelaavvaagllvvfalalainvarGrtaidcGcfrngl 112
                 rl la +   a  +k+         v+ ++++P  +a ++   lP+vela+   l+   a+ laa+++a+llvvf + +a   +rG  aidcGcf  g 
  KIR65419.1  25 RLGLAAVWLIAGGAKVGDLAASGRAVNAYQVMPYDVATVIGAALPFVELALGALLLFGLATRLAAGISATLLVVFVAGIASAWSRGL-AIDCGCFGSGG 122
                 5555555555555555555555557999**********************************************************5.8******8874 PP

>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9  13.2   1.3e-09   1.1e-05       4      79 ..      23      99 ..      20     106 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.3e-09
        DoxX  4 llRlllgvlfiahGlqkltgfglegtaasla...alglpppellaylaalvElvgglllllGlltRlaAlalavtllva 79
                ++Rl l+++ + +G  k+   +l+++  +++    ++ +++++   +  +vEl++g lll+Gl+tRlaA + a +l+v 
  KIR65419.1 23 AARLGLAAVWLIAGGAKVG--DLAASGRAVNayqVMPYDVATVIGAALPFVELALGALLLFGLATRLAAGISATLLVVF 99
                79*****************..6666555555332777778*****************************9998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1340.64
//
Query:       KIR65420.1  [L=204]
Description: RNA polymerase sigma factor SigC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-13   49.7   3.7    5.2e-13   48.6   3.7    1.7  1  Sigma70_r2    Sigma-70 region 2
    1.7e-12   46.8   0.1    3.3e-12   45.9   0.1    1.4  1  Sigma70_r4_2  Sigma-70, region 4
    5.8e-05   22.5   0.2    0.00011   21.7   0.2    1.5  1  Sigma70_r4    Sigma-70, region 4
    0.00067   19.6   0.4     0.0014   18.6   0.4    1.5  1  Sigma70_ECF   ECF sigma factor


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   3.7   1.2e-16   5.2e-13       1      66 [.      51     113 ..      51     129 .. 0.93

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 1.2e-16
                 HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHH CS
  Sigma70_r2   1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlR 66 
                 +v++ +  v+r+a  l+  + +a+Dl+Qe++lr++ra++ f  +r+ s+++wll iar+a+ d+lR
  KIR65420.1  51 FVRATQAEVWRFAAALVD-PDTADDLTQETYLRAFRALPAFA-GRS-SARTWLLGIARRACADHLR 113
                 57888999******9987.56*********************.***.*****************99 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.1   7.4e-16   3.3e-12       6      51 ..     146     191 ..     144     194 .. 0.95

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 7.4e-16
                   HHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHH CS
  Sigma70_r4_2   6 ealaeLperqreifllryleglsykEIAellgisegtVksrlsRAr 51 
                   +++++Lp ++r +f+l +l glsy+E+A++ g+++gt++sr++RAr
    KIR65420.1 146 DLVRRLPAERRGAFVLTQLLGLSYAEAAAVEGVPVGTIRSRVARAR 191
                   5789*****************************************9 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.2   2.4e-08   0.00011       3      48 ..     149     194 ..     147     196 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.4e-08
                 HHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   3 asLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 ++Lp++ r  ++l  + gl+++E +++ g++ +++r++ +rA++ L
  KIR65420.1 149 RRLPAERRGAFVLTQLLGLSYAEAAAVEGVPVGTIRSRVARARHDL 194
                 5899999***********************************9866 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.4     3e-07    0.0014      10     179 ..      39     194 ..      32     200 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3e-07
  Sigma70_ECF  10 qvkdGdaeaaeqllelvydeLrrlagsklknerreetledtaLvfeaflrlvdkekfpdlsgrdhlfalaaeamrrilidhaRrrkrqkRGGdvvrae 107
                  + +dGd +a++   ++ + e+ r a + +  + +++      L  e +lr+ +  ++p + gr    + ++ + rr   dh+R   r++R  ++   +
   KIR65420.1  39 AARDGDPAAQAAFVRATQAEVWRFAAALVDPDTADD------LTQETYLRAFR--ALPAFAGRSSARTWLLGIARRACADHLRVVVRRRRLAERLASH 128
                  6799*********************99988777666......45566777777..77788888888888889999***********999965543333 PP

  Sigma70_ECF 108 ldeeedsvdsdspdelleLdealerlls.ldpeqarlvelrkleGlsveEiAeklgvskrtverrlalaRawl 179
                       ++ d ++pd   +L  a   l + l+ e +    l +l Gls +E+A++ gv   t++ r a aR  l
   KIR65420.1 129 -----AHTDLPHPDPAGQLGAA--DLVRrLPAERRGAFVLTQLLGLSYAEAAAVEGVPVGTIRSRVARARHDL 194
                  .....45677777777777543..3333367788888999************************999999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1481.20
//
Query:       KIR65421.1  [L=242]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-51  174.3   3.1    2.3e-51  174.0   3.1    1.1  1  DUF1775        Domain of unkown function (DUF1775)
  ------ inclusion threshold ------
      0.039   13.7   7.0       0.35   10.7   1.3    2.3  2  DUF4190        Domain of unknown function (DUF4190)
       0.25   11.4   7.0        2.1    8.4   7.0    2.0  1  DUF2275        Predicted integral membrane protein (DUF2275)
       0.39   11.0   7.1        5.9    7.2   0.3    2.3  2  DUF3040        Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> DUF1775  Domain of unkown function (DUF1775)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.0   3.1   5.1e-55   2.3e-51       1     149 []      32     179 ..      32     179 .. 0.97

  Alignments for each domain:
  == domain 1  score: 174.0 bits;  conditional E-value: 5.1e-55
     DUF1775   1 HvtvepkeaaagsyakltfrVphgcdgaaTtkvevtlPeg..vasvkpqpkpgWtvevekeklakpvesehgkevteavkevtWtagea..lkdgqfde 95 
                 Hv+v+pkea++g+y +++frVp++ d+a+Ttkvev lPe+  v sv+++p+pgWtv+vek+k++ pv++ hg+evteav ++tWta+ +  +k+gqf+e
  KIR65421.1  32 HVSVNPKEATQGGYGRFAFRVPNEGDEASTTKVEVVLPENapVGSVSTMPVPGWTVAVEKRKVDPPVQV-HGSEVTEAVAKITWTATGDaaVKPGQFQE 129
                 *********************************************************************.888************997789******** PP

     DUF1775  96 felsa.klpdkagdtlvfpvlQtcedgevvrWievpaegqegaeelekPAPvlkl 149
                 f++s+ +lp+   dt+vf++lQt++dg+vvrWie+p   ++gaee+e+PAPvl+l
  KIR65421.1 130 FPVSMgPLPQ--VDTMVFKALQTYSDGTVVRWIEEP---TAGAEEPENPAPVLTL 179
                 **********..59**********************...6688**********97 PP

>> DUF4190  Domain of unknown function (DUF4190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.4    0.0021       9.3      17      31 ..      14      28 ..       7      46 .. 0.79
   2 ?   10.7   1.3   7.9e-05      0.35       4      38 ..     208     238 ..     203     241 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0021
     DUF4190 17 iitgivavilGhvAl 31
                 +++++av+lG++A 
  KIR65421.1 14 ALGAVAAVVLGVAAP 28
                489999999999985 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 7.9e-05
     DUF4190   4 asLvlgilgllfliitgivavilGhvAlrqirrsg 38 
                 a+L++g++g    ++ g+++++lG +A ++ rr +
  KIR65421.1 208 AGLAFGVAG----LVAGLAGLVLGGLAFARTRRGP 238
                 778889998....48899******99999999875 PP

>> DUF2275  Predicted integral membrane protein (DUF2275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   7.0   0.00048       2.1      31     181 ..       2     204 ..       1     212 [. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00048
     DUF2275  31 lrlkrklalaglivlilAavgfgvvsy..............................atiskmdvvrvlkkaglslkaee................... 80 
                 lr++r++ +a+l++ ++Aav++gv                                 a  +k +vv+      +s++  +                   
  KIR65421.1   2 LRHRRSVTAAALALGAVAAVVLGVAAPasahvsvnpkeatqggygrfafrvpnegdeASTTKVEVVLPENAPVGSVSTMPvpgwtvavekrkvdppvqv 100
                 899******************999988899999*********************977444444444444444455555556666666666777777776 PP

     DUF2275  81 ....vqkkvkgldeegLga.iiepgstearrspaeaiksiesdpkaasqipdaa..nfeikatliiseeplasalavakdadkiapvtrtaydlpapek 172
                     v + v++++    g   ++pg+ +  ++++ ++ ++    + a q  ++      i++  +++eep++   a+ ++  ++ap +++  + pa   
  KIR65421.1 101 hgseVTEAVAKITWTATGDaAVKPGQFQEFPVSMGPLPQVDTMVFKALQTYSDGtvVRWIEEPTAGAEEPENP--APVLTLTAAAPTEGA--PAPAAPA 195
                 6777********999999888*****************************99985566799999999999876..9999999******99..6666666 PP

     DUF2275 173 evlpgeldd 181
                  +++ e d+
  KIR65421.1 196 AAADDEDDS 204
                 677776665 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   1.8    0.0022       9.9      41      67 ..       4      29 ..       1      36 [. 0.74
   2 ?    7.2   0.3    0.0013       5.9      44      66 ..     209     232 ..     192     239 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0022
     DUF3040 41 lrrlavlavllfvaGllllvlGvaaaa 67
                +rr  v a++l++ +++++vlGvaa a
  KIR65421.1  4 HRR-SVTAAALALGAVAAVVLGVAAPA 29
                455.88899998999999****88765 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0013
     DUF3040  44 lavlavllfvaGllllvlG.vaaa 66 
                  +  +v+++vaGl+ lvlG +a a
  KIR65421.1 209 GLAFGVAGLVAGLAGLVLGgLAFA 232
                 467899999999999999977765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1789.77
//
Query:       KIR65422.1  [L=208]
Description: hypothetical protein TK50_08375 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.1   4.9        2.4    8.1   0.5    2.5  2  DUF4605   Domain of unknown function (DUF4605)


Domain annotation for each model (and alignments):
>> DUF4605  Domain of unknown function (DUF4605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.5   0.00014       2.4      32      58 ..       7      33 ..       3      34 .. 0.86
   2 ?    5.8   0.4   0.00069        12      36      53 ..      60      77 ..      56      83 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00014
     DUF4605 32 lllllllflGlrGlllvgllcfviqls 58
                l+ +lll +Gl++ll +g+l +++++s
  KIR65422.1  7 LAGMLLLTIGLPALLAAGVLGVLSRHS 33
                77899***************9998875 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.00069
     DUF4605 36 lllflGlrGlllvgllcf 53
                + ++lG+ G+llv+   +
  KIR65422.1 60 AAWLLGVLGVLLVASAAL 77
                679**********86655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1495.49
//
Query:       KIR65423.1  [L=429]
Description: hypothetical protein TK50_08380 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-54  184.2  40.9    3.1e-54  184.2  40.9    3.1  4  GT87            Glycosyltransferase family 87
  ------ inclusion threshold ------
      0.038   13.9   0.1      0.089   12.6   0.1    1.6  1  Mannosyl_trans  Mannosyltransferase (PIG-M)


Domain annotation for each model (and alignments):
>> GT87  Glycosyltransferase family 87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1     0.087   7.8e+02     132     148 ..      24      40 ..      12      60 .. 0.64
   2 !  184.2  40.9   3.5e-58   3.1e-54       1     239 []      80     316 ..      80     316 .. 0.95
   3 !    3.7   1.1    0.0049        44      92     109 ..     346     365 ..     325     371 .. 0.71
   4 ?   -3.3   0.1      0.68   6.1e+03      27      36 ..     395     404 ..     385     414 .. 0.50

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.087
        GT87 132 aaatalvltalpllllp 148
                  + + +++++lp+l+lp
  KIR65423.1  24 LVTVLALAAVLPALYLP 40 
                 33334444444666665 PP

  == domain 2  score: 184.2 bits;  conditional E-value: 3.5e-58
        GT87   1 FtYPPfaallfaplallpyglalalwallnlaalllalrlllrrlgral...asavalalllaalalepvlstlgfGqinllllllvlldllllrrrrp 96 
                 FtYPP +all+ p+allp+gl +a++++l+++ +++++r+ll  +  ++   ++  ++  +l+++a+e+ ++t+ fGqin+ll++l+l+dll    + +
  KIR65423.1  80 FTYPPVSALLLRPFALLPLGLTIAVFTVLTVLGVVVTTRWLLAPVVARHglpRVFTVTVGVLLVFAVESTRETITFGQINMLLVVLILADLLFAVPQGR 178
                 9*******************************************99988**98889999999*********************************8888 PP

        GT87  97 llaGlliGlaaaiKltPalfllylllrrrwralaaaaatalvltalpllllppssleyfletlfdtseri..aedvgnqsllslagllaralalglsav 193
                 ++aG+++Gla+a+Kl+P +f++yll++rrwr +a+a ata+++t+l+++++p++s+++f++ l+ t +r+  ++++gnqs   l gll+r++a    ++
  KIR65423.1 179 RWAGVGVGLATALKLYPGIFIVYLLATRRWRDAAVASATAAGATLLAAAVAPADSWRFFTHELWAT-DRVgrTDYTGNQS---LFGLLSRLTAPAE-PS 272
                 89****************************************************************.99***********...9999999555555.89 PP

        GT87 194 tllwlvlvllvvalaavaawrlr.rrerllalaaallvallalLvsP 239
                  +lwl+l+llv++ ++++a+r+  +++ l++l+   l++l++ LvsP
  KIR65423.1 273 RVLWLALALLVAGYGLWRAARAArAGDALTGLT---LTGLVGALVSP 316
                 9*****************999996788899999...**********9 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.0049
        GT87  92 r..rrrpllaGlliGlaaai 109
                    rrr++laGl++G +a+i
  KIR65423.1 346 AgaRRRRWLAGLAVGTGALI 365
                 0447899********99987 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 0.68
        GT87  27 allnlaalll 36 
                 +ll+l+++++
  KIR65423.1 395 VLLSLLLVVA 404
                 3333332222 PP

>> Mannosyl_trans  Mannosyltransferase (PIG-M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   9.9e-06     0.089       4      58 ..     155     208 ..     152     231 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.9e-06
  Mannosyl_trans   4 rGnadsivailvlltlyllekrkiasaalvlGlavhlkiYPliyalalalslskk 58 
                      G+ ++++ +l+l+ l +   +    a++  Gla  lk+YP i+++ l+   ++ 
      KIR65423.1 155 FGQINMLLVVLILADLLFAVPQGRRWAGVGVGLATALKLYPGIFIVYLLA-TRRW 208
                     688999********999888888888***************999875443.3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2895.01
//
Query:       KIR65424.1  [L=185]
Description: oligoribonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-24   87.6   0.0    1.5e-24   87.4   0.0    1.0  1  RNase_T   Exonuclease


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   0.0   8.4e-29   1.5e-24       7     164 ..       1     158 [.       1     159 [. 0.97

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 8.4e-29
                 ESSSTTCTTS-EEEEEEEEEETTCC..EEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETT.TCEEEESSHHH CS
     RNase_T   7 ttgldakekdeiieiaaisidggen..eigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahn.aafdvgflraa 102
                 +tgld   +d++ie+aa ++d ++n    g +++++ +   la +++ +  ++g ++++ ++++s+ + +e+++ +l++ + +v++   a+++g++ a+
  KIR65424.1   1 MTGLDL-GRDALIEVAALVTDPDLNvlGDGVDVVIHADEAALAAMPEIVRTMHGKSGLTEEVRRSTVTLAEAEDLVLDYVTSHVKDArSAPLCGNSIAT 98 
                 8*****.8******************988999******************************************************************* PP

                 HHHHHHHHHHHHHHCSEHCECHHHHHHHHHCHHHHHHHHHTTCHSSSSTSSHHHHHHHHHHH CS
     RNase_T 103 dkrilkkevpkrnqfldtlildkatlkelartsldklaeklgleedgraHrAldDaeatakl 164
                 d+ ++ +++p+ +++l+++++d++++kel+r++++ +  + ++++ +  HrAl+D+++++++
  KIR65424.1  99 DRGFIARDMPRLDAHLHYRMIDVSSIKELCRRWYPRVYFGQPKKGLA--HRALADIRESIRE 158
                 *************************************9988888876..*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1433.62
//
Query:       KIR65425.1  [L=220]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-06   27.9   0.0      3e-06   27.5   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    5.9e-06   27.0   0.0    8.8e-06   26.4   0.0    1.2  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    1.7e-05   24.7   0.0    2.6e-05   24.1   0.0    1.3  1  FR47             FR47-like protein
     0.0001   22.0   0.0    0.00013   21.7   0.0    1.2  1  GNAT_acetyltran  GNAT acetyltransferase
  ------ inclusion threshold ------
      0.016   14.9   1.0      0.034   13.8   1.0    1.5  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
       0.02   15.3   0.1      0.031   14.7   0.1    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
      0.035   13.8   2.8      0.052   13.3   0.8    1.9  2  PanZ             Acetyltransferase (GNAT) domain, PanZ
      0.046   13.7   0.1      0.065   13.2   0.1    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
       0.13   12.4   4.2      0.064   13.4   1.8    1.7  2  Acetyltransf_6   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.5e-09     3e-06      32     117 .]     127     207 ..      92     207 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.5e-09
                     TCEEEEEEETTE.EEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE.EEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  32 aegllvaeedge.liGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikki.vlaveedndaairlYeklGF 117
                      e l+v   dg+ l+G + ++  +     +++   +   +++rg+Gl+++L+ ++++r+++eg+  +    +++ n a+ r+ e  GF
      KIR65425.1 127 REVLVVRDADGRyLAGVA-IKRHD----AHGHELAVGTVRAARGRGLARRLVAQAARRVLDEGA--VpTYRHDPANGASARVAEAAGF 207
                     345666777788566666.33333....3699999999************************99..534457777********99999 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   4.4e-09   8.8e-06      16     137 ..      85     207 ..      80     208 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 4.4e-09
  Acetyltransf_3  16 f.elrsdpevmrylpepltleeaeewlera......waeeseeegygwaivlkdtgv.iGsvglrdleeedeeaelgymlapsfwgkGyateavr 102
                     + +++s+ +v r++  p++l e  ew++++      w     +++  +++++ d++   G++ + + ++ ++  el     ++++g+G+a+  v+
      KIR65425.1  85 HpRWVSNDDVFRWTLAPAPLPEVGEWIAPTepglprWLGL-FDRE-VLVVRDADGRYlAGVA-IKR-HDAHG-HELAVGTVRAARGRGLARRLVA 174
                     5469*********8889999********887776665432.2222.3666555555646666.554.44445.78888888999*********** PP

  Acetyltransf_3 103 alleyafeelglerlvavidkeNeaSirvleklGf 137
                     ++ + + +e  ++    ++d+ N aS+rv+e +Gf
      KIR65425.1 175 QAARRVLDEGAVP--TYRHDPANGASARVAEAAGF 207
                     ******9999888..99*****************9 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.3e-08   2.6e-05      22      80 ..     152     210 ..     132     217 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.3e-08
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfeki 80 
                 g   a+ +   +r+rGl++rlv++ a+++  +g  ++    ++N +s r+ e+ Gf  +
  KIR65425.1 152 GHELAVGTVRAARGRGLARRLVAQAARRVLDEGAVPTYRHDPANGASARVAEAAGFPDR 210
                 55567888999*******************************************99766 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   6.4e-08   0.00013     179     235 ..     150     208 ..     131     218 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 6.4e-08
  GNAT_acetyltran 179 ekgieieidTkedyrrkgLAtivaaalileclkrglyPsW..DaaneaSvaLaekLGYe 235
                       +g+e  + T  + r++gLA+ + a+  ++ l++g +P +  D an aS+++ae  G+ 
       KIR65425.1 150 AHGHELAVGTVRAARGRGLARRLVAQAARRVLDEGAVPTYrhDPANGASARVAEAAGFP 208
                      589***********************************9844666**********9995 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.0   1.7e-05     0.034      11     139 ..      87     209 ..      83     214 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.7e-05
                     HHCTSCCCHHHH-----HHHHHHHHHHHC.STTEEEEEEEETTEEEEEEEEEEGGGCGGGGCS---TT-EEEEEEESSHH.HCTTTCHHHHHHHH CS
  Acetyltransf_8  11 rWmnrprvaewweeagtleevrellakldadphsepliglldgepvgyfeiYwakedelaeyydaepgdrGiHlligeae.argkglttallral 104
                     rW++++ v +w    ++l ev e+ a    +p    ++gl+d e        +a+   la++   +    G  l++g  + arg+gl+++l+ + 
      KIR65425.1  87 RWVSNDDVFRWTLAPAPLPEVGEWIAPT--EPGLPRWLGLFDREVLVV---RDADGRYLAGVAIKRHDAHGHELAVGTVRaARGRGLARRLVAQA 176
                     7****************99999999988..59999******9987664...4677887889999999999*******87737************* PP

                     HHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EE CS
  Acetyltransf_8 105 vhylfadprtrrvvvEPdvrNerairllekaGfek 139
                     +++++++ ++     +P   N ++ r+ e+aGf  
      KIR65425.1 177 ARRVLDEGAVPTYRHDP--ANGASARVAEAAGFPD 209
                     *******9999999888..6999999*****9965 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   1.6e-05     0.031       4      50 ..     128     177 ..     125     207 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.6e-05
                     EEEEEEET.TEEEEEEEEEEESTCTEEEEE-G..GGTTSSHHHHHHHHTT CS
  Acetyltransf_7   4 evfVaedd.gkivGfialslldaeitrlaVdp..eyrgkGiGraLleaae 50 
                     ev+V++d  g+ +  +a++++da+ ++laV +  ++rg+G++r+L++ a+
      KIR65425.1 128 EVLVVRDAdGRYLAGVAIKRHDAHGHELAVGTvrAARGRGLARRLVAQAA 177
                     5666655557777777778887555555544444************8422 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.34   6.9e+02      40      62 ..      66      88 ..      59      96 .. 0.80
   2 ?   13.3   0.8   2.6e-05     0.052      40      90 ..     130     180 ..     120     210 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.34
        PanZ 40 lfaarFNdRlLgAvkveledkea 62
                 +aar   RlL++  v + +  +
  KIR65425.1 66 ALAARSHRRLLAGLPVAVAHPRW 88
                5799999*****99998877666 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.6e-05
        PanZ  40 lfaarFNdRlLgAvkveledkea.elsdlcVRevTRrRGVgsyLleearrqa 90 
                 l++     R L++v+++++d+ + el    VR+  R RG +++L+ +a r+ 
  KIR65425.1 130 LVVRDADGRYLAGVAIKRHDAHGhELAVGTVRA-ARGRGLARRLVAQAARRV 180
                 55555678***********99772566666765.7**********9988765 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.3e-05     0.065      32      82 ..     129     182 ..     123     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.3e-05
  Acetyltransf_10  32 lllvaeeggkivGviel.rdgshisllfV..dpeyrgqGigkaLleaveeeaek 82 
                      +l+v + +g+ +  +++ r + h + l+V   +++rg+G++++L+ ++ +++ +
       KIR65425.1 129 VLVVRDADGRYLAGVAIkRHDAHGHELAVgtVRAARGRGLARRLVAQAARRVLD 182
                      5667777777776666967777999999944589**************999744 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.1   4.2e+03      58      61 ..      64      67 ..      33      90 .. 0.60
   2 ?   13.4   1.8   3.2e-05     0.064      71     128 ..     127     186 ..     118     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.1
  Acetyltransf_6 58 lrdl 61
                    +r+l
      KIR65425.1 64 VRAL 67
                    2333 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.2e-05
  Acetyltransf_6  71 lrlyvlrl.dgrpvAvalglrsgdrlyywlggydpelaklspgllllweliedaaeeG.l 128
                      +++v+r  dgr++A++++ r++ + + + +g  +++++ ++ + l+++++++  +eG +
      KIR65425.1 127 REVLVVRDaDGRYLAGVAIKRHDAHGHELAVGTVRAARGRGLARRLVAQAARRVLDEGaV 186
                     5677788769***********************************************955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1461.67
//
Query:       KIR65426.1  [L=232]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-34  116.3   0.0    1.3e-33  115.8   0.0    1.3  1  TetR_C_23      Tetracyclin repressor-like, C-terminal domain
    7.7e-19   67.2   0.3    2.2e-18   65.7   0.3    1.9  1  TetR_N         Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.034   13.2   0.0      0.057   12.5   0.0    1.3  1  RmlD_sub_bind  RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> TetR_C_23  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.8   0.0   2.2e-37   1.3e-33       1     120 [.      97     219 ..      97     226 .. 0.95

  Alignments for each domain:
  == domain 1  score: 115.8 bits;  conditional E-value: 2.2e-37
   TetR_C_23   1 KllsflftflevltanRsfvlqflkkaksplsnlsklselrkkfkefakelleegletkelkvrkflekklsellwlqllfvlkFWvkDtSegfekTdv 99 
                 +l ++l++ ++vlt++++f+ +f+k+a++p+s+ls++s ++++ ++++ +l++e+l+++++kv+++l+ +l+ellwl++l+v+++Wv+D+S+g++kT++
  KIR65426.1  97 RLAGVLHAGIDVLTPYHEFAGTFFKTAAEPTSPLSPFSAESAAPRQASVALFREVLDGSTAKVDPELRPELPELLWLAYLGVVLYWVHDRSPGQAKTRQ 195
                 799************************************************************************************************ PP

   TetR_C_23 100 lieksvnlifdlldls...pldsl 120
                 l++ +v+l+++l++ls   +l+++
  KIR65426.1 196 LVDGAVPLVDRLVGLSrlrVLRPA 219
                 ***************955566555 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.3   3.7e-22   2.2e-18       1      46 [.      26      71 ..      26      72 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 3.7e-22
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLlea 46
                Ild+A+++f erGy++tt+r+IA++AGv+ g  Y+yF+sK+ L+++
  KIR65426.1 26 ILDTALRMFRERGYARTTMRAIAQEAGVAVGNAYYYFGSKDHLIQE 71
                9******************************************987 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.5e-06     0.057     184     280 ..      76     169 ..      70     175 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.5e-06
                    EEHHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHCHTTSEEEEE-CCCS--SS---SBE-B--HHHHHCCT----BHHHHHH CS
  RmlD_sub_bind 184 TsardlAevllqllekaaeekelagvyHlanegetswlefArailkeagadseevkpistaeyptpAkRPanSvLdtekleatfgiklrewrealk 279
                    T+++  A++ + l+++    ++lagv+H++ +  t  +efA   +k+a + ++ ++p s+++   +A+R a  +L  e l  ++  + +e r +l 
     KIR65426.1  76 TQVEHRAAAAAVLARETEFGQRLAGVLHAGIDVLTPYHEFAGTFFKTAAEPTSPLSPFSAES---AAPRQASVALFREVLDGSTAKVDPELRPELP 168
                    78888888888899999989999***************************999999996553...4556666666666555555555555555555 PP

                    H CS
  RmlD_sub_bind 280 e 280
                    e
     KIR65426.1 169 E 169
                    5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1795.30
//
Query:       KIR65427.1  [L=170]
Description: thiol-disulfide oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-10   41.7   0.1      3e-10   41.4   0.1    1.1  1  DUF393    Protein of unknown function, DUF393


Domain annotation for each model (and alignments):
>> DUF393  Protein of unknown function, DUF393
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.1   1.7e-14     3e-10       1      98 [.      27     122 ..      27     140 .. 0.79

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1.7e-14
      DUF393   1 vlyDgeCplCnravqflerrdrkgrirfadlqsasgkallkelgidaeqldslllv.ieagrvysgsdAaleiaralpglwrllalllvlprlkklrda 98 
                 vlyD++CplC++a ++l  r +   ++f+++ s ++++  + +g+d +   + l v  + g+vy g  A++++++al    r  a  l  p l +l+++
  KIR65427.1  27 VLYDAHCPLCRTARRWLATRAQLVPLEFVPAGSVEARR--RFPGLDHDATLRDLTVvADTGEVYAGDGAWFACLWALAD-HRATAERLARPHLMPLARR 122
                 89*****************************7777777..5699997777776666699999***********777766.4555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1292.26
//
Query:       KIR65428.1  [L=178]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   12.1   0.2       0.27   11.4   0.2    1.3  1  DUF872    Eukaryotic protein of unknown function (DUF872)


Domain annotation for each model (and alignments):
>> DUF872  Eukaryotic protein of unknown function (DUF872)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   1.5e-05      0.27      51     102 ..      49     107 ..      36     113 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.5e-05
      DUF872  51 lLlllGlvLlllgvv.ilvep...seGvssavf...lvlGlllfiPGvYhvvyiylavr 102
                  Ll++G  Ll lg+v +++ +    +G+s+a+    l +Gl+l++ G+ h   ++   r
  KIR65428.1  49 SLLVVGFYLLNLGYVtVAMRHrdpVTGTSQAMEelsLKVGLVLLVLGALHFFNVFALGR 107
                 699**********8625565554478888877677799**********99887766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1289.51
//
Query:       KIR65429.1  [L=492]
Description: glycoside hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-72  242.7   0.4    7.7e-72  242.3   0.4    1.1  1  Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.3   0.4   4.3e-76   7.7e-72      30     316 ..      34     324 ..      27     327 .. 0.95

  Alignments for each domain:
  == domain 1  score: 242.3 bits;  conditional E-value: 4.3e-76
                    H--SEEE--GGGTSSHHHHHHHHHHHHHH-SS....S--EEEE---BTTB---SSS..---S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE- CS
  Glyco_hydro_3  30 yqvGgiilfaenledtkqleelieaarqaseksrlgiPlllavDqegGlvqrlgeg..tlfPsalalaatssldlikelgriiakelralgididf 123
                      ++g +lf+ n++d++q++ +++a+r+a  +      +l+a+D+egG v+rl ++     P++ al+a  ++ l   +  +i++el+algi++d+
     KIR65429.1  34 EGLAGHTLFGTNVHDPAQVAASTAALRAARPD------VLVAIDEEGGDVTRLAHAtgSPYPGNAALGAVDDPALTGRVYAAIGAELAALGITVDL 123
                    4567778899**********************......***************998545799********************************** PP

                    --B-----STTSS.SGGGSS-SSHHHHHHHHHHHHHHHHHTT-EEEEEEETTGTT-SSETTTSEEB----HHHHHHTTHHHHHHHHHTT-SEEEE- CS
  Glyco_hydro_3 124 aPvvdvnrdprng.igvrsFsedpelvaalaaamvkGlqgagvaatvKHFpghGdgavdshkelptvdhseeelrevdlvpfqaaieagvdsVMta 218
                    aP+vdvn +++n+ ig rsF++dp+ va   aa v Glq++gvaa++KHFpghG++ +dsh elptv++s + lre dl pf a ++agv s+Mta
     KIR65429.1 124 APTVDVNTADENPvIGTRSFGADPARVAVHSAAAVAGLQSTGVAACAKHFPGHGATVADSHHELPTVEASPAVLRERDLPPFAAVVDAGVASIMTA 219
                    ************************************************************************************************ PP

                    --B-TTT---.BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS-.HHHHHHHHHHHT-SBEES-S---SG.....HHHHHHHHHTTSS-HH CS
  Glyco_hydro_3 219 Hvqfpaldgt.patgskklltdvLRkelGFdGvvvsDalamkeiadrgg.keeavvlaLkAGvDilLvpeertse.....ikalkkavkeGeltea 307
                    H+ +pal+g  pat s+++l d+LR elGF G v++Dal mk++a  +g    a+vlaL AG D+l + + ++        +++++a+++G+l +a
     KIR65429.1 220 HIRVPALTGAgPATFSRAVLVDLLRRELGFTGAVITDALEMKGAALAAGgVGPAAVLALAAGADLLCIGARVDAGlvervAAEIVAALRDGRLDRA 315
                    *******************************************9987776999**************9999987788898999************* PP

                    HHHHHHHHH CS
  Glyco_hydro_3 308 ridesvrrv 316
                    r+++++ r 
     KIR65429.1 316 RVEQAAGRA 324
                    ****99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3419.45
//
Query:       KIR65430.1  [L=391]
Description: ROK family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-36  126.3   0.0    2.4e-36  125.7   0.0    1.2  1  ROK             ROK family
      8e-07   28.9   3.0      8e-07   28.9   3.0    3.1  2  MarR_2          MarR family
    2.4e-05   23.8   1.5    2.7e-05   23.6   0.2    1.8  2  HTH_24          Winged helix-turn-helix DNA-binding
    6.4e-05   22.8   0.1     0.0002   21.2   0.1    1.8  2  MarR            MarR family
    0.00011   22.1   0.0    0.00026   20.8   0.0    1.6  1  TrmB            Sugar-specific transcriptional regulator TrmB
     0.0003   20.7   0.6    0.00067   19.6   0.6    1.6  1  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0026   18.2   0.0     0.0068   16.9   0.0    1.7  1  HTH_27          Winged helix DNA-binding domain
     0.0048   16.7   2.8     0.0048   16.7   2.8    3.1  3  HTH_IclR        IclR helix-turn-helix domain
     0.0078   15.7   3.2      0.033   13.7   1.7    2.2  2  BcrAD_BadFG     BadF/BadG/BcrA/BcrD ATPase family
     0.0098   16.1   0.0      0.019   15.1   0.0    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
  ------ inclusion threshold ------
      0.014   15.1   0.5      0.031   13.9   0.5    1.7  1  Crp             Bacterial regulatory proteins, crp family
      0.018   14.9   0.7      0.018   14.9   0.7    3.1  3  HTH_AsnC-type   AsnC-type helix-turn-helix domain
      0.022   14.7   0.1      0.053   13.5   0.1    1.6  1  HTH_11          HTH domain
      0.079   12.6   0.0       0.14   11.8   0.0    1.3  1  SMC_ScpB        Segregation and condensation complex subunit 
        3.3    7.9   9.9       0.43   10.7   3.5    2.6  2  HTH_20          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.7   0.0     2e-39   2.4e-36       2     262 ..      87     353 ..      86     379 .. 0.86

  Alignments for each domain:
  == domain 1  score: 125.7 bits;  conditional E-value: 2e-39
                 EEEEE-SSEEEEEEEETTS-EEEEEEE.EEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCCCCTTHHHHHHHHHTS- CS
         ROK   2 igidiGgtkialalvdeegeilarekv.etptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitwenfdlvekleerlnvp 99 
                 +g+d+G++ +++a  d  g +++r +   + t++++  +++a+ ++ + a +++ ++ +v++g pGl+++ sg i+++ n+   + +l+++l e+l  p
  KIR65430.1  87 VGVDVGAERVVAACADITGAVVSRVEQsTRDTDDPVGVVHNAVVQAASGAGAELSSVRRVVLGTPGLVDPASGDITFAFNLPRWHRGLLAALREDLATP 185
                 8********************99977747889999*********************************************888889************* PP

                 EEEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-....TTS-B-TTS-BS..BHHHCCSHHHHHHCHTCCG CS
         ROK 100 vevenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqld....pegekcgCGnqg..ClEtlasgralekraqqkg 192
                 v++enDvn aa+aEa+ ga+ + +++++v vg GvG +++++g+l++G++G age+G +++     p        +++   + +la   a+ ++a+++g
  KIR65430.1 186 VVFENDVNLAAVAEAQSGAARENRDFVLVWVGAGVGLAIMLGGRLHHGSSGAAGEIGYLPVPgvpiP----RDVSRRAkpAFQQLAGADAVLAVAREHG 280
                 **************************************************************55442....3333333358999*********999966 PP

                 TTS-.HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHH..HHHHHHHHHCC CS
         ROK 193 ekle.akeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadkll..eairklvkkyl 262
                   ++ a++ +++a        +++++la++la ++a   +++dp  +vl+G+v++a +    e+++++v+++ 
  KIR65430.1 281 LPADsAADAVRAAIAAGTAGGPLLDELARRLALGVASTCVVLDPPLVVLAGEVGQAGGAAlaERVQHEVAAIT 353
                 555415566777788888889**********************************987653466666665554 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   3.0   6.7e-10     8e-07       7      62 .]      18      71 ..      13      71 .. 0.92
   2 ?    1.2   0.3      0.29   3.5e+02      23      49 ..     271     297 ..     255     300 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 6.7e-10
                HHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2  7 qarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                ++ +L  L   ++  lt + l + +glsk ++s++++rL+++GLv r+  ++ +R+
  KIR65430.1 18 DRAALELLLEQGP--LTRARLGELTGLSKVTASQLVERLEERGLVARVGEQAGGRG 71
                5778999999999..*********************************99999996 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.29
                 EHHHHHHHHTSSHHHHHHHHHHHHHTT CS
      MarR_2  23 tvgelarrlglsksavsrilkrLvaaG 49 
                 +v ++ar+ gl+  ++  +++ + aaG
  KIR65430.1 271 AVLAVAREHGLPADSAADAVRAAIAAG 297
                 677899*****************9999 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.2   2.3e-08   2.7e-05       4      47 ..      17      60 ..      14      61 .. 0.96
   2 ?   -3.7   0.1         8   9.5e+03      22      29 ..     306     313 ..     305     314 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.3e-08
      HTH_24  4 tdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                +dr+ LelL +++ ++ + L e +glS+ t ++ ++rLee Gl+
  KIR65430.1 17 NDRAALELLLEQGPLTRARLGELTGLSKVTASQLVERLEERGLV 60
                89****************************************98 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8
      HTH_24  22 eLAerlgl 29 
                 eLA+rl l
  KIR65430.1 306 ELARRLAL 313
                 89999975 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   1.7e-07    0.0002       8      49 ..      21      62 ..      17      64 .. 0.96
   2 ?   -3.4   0.0         8   9.5e+03      22      35 ..     340     353 ..     334     355 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.7e-07
                HHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        MarR  8 iLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieR 49
                +L++l eqgpl+ + L++  g+sk t++ ++ rLe++Gl+ R
  KIR65430.1 21 ALELLLEQGPLTRARLGELTGLSKVTASQLVERLEERGLVAR 62
                6999************************************99 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8
                 HHHHHHTS-HHHHH CS
        MarR  22 eLakklgvskstvt 35 
                  La++++ + +++t
  KIR65430.1 340 ALAERVQHEVAAIT 353
                 69999999999998 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.1e-07   0.00026      13      58 ..      21      66 ..      16      81 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.1e-07
                HCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 13 vYlaLlklgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                +   Ll++gp+t   + e +g+++ ++ + +++Le++GlV r+ ++
  KIR65430.1 21 ALELLLEQGPLTRARLGELTGLSKVTASQLVERLEERGLVARVGEQ 66
                667899***********************************99766 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.6   5.6e-07   0.00067      11      53 ..      17      62 ..      10      68 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.6e-07
                HCTTTC.EEEE.....EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE CS
   HTH_Crp_2 11 aeragg.eiel.....pltqeelAsmlGltretvsrilseLkreglisr 53
                 +r ++ e  l     plt++ l+++ Gl+ +t s++  +L+++gl+ r
  KIR65430.1 17 NDR-AAlE--LlleqgPLTRARLGELTGLSKVTASQLVERLEERGLVAR 62
                344.2222..122444******************************984 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.6e-06    0.0068       5      58 ..      18      70 ..      16      79 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.6e-06
      HTH_27  5 qalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrr 58
                +++ L+l+  ++++ + a+l + + +++ ++s  +++L+e+GLv r g  a +r
  KIR65430.1 18 DRAALELLL-EQGPLTRARLGELTGLSKVTASQLVERLEERGLVARVGEQAGGR 70
                667788888.89999*****************************9999988887 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.8     4e-06    0.0048       9      51 ..      22      63 ..      11      64 .. 0.90
   2 ?   -3.1   0.0       5.9   7.1e+03      25      38 ..     133     146 ..     129     147 .. 0.76
   3 ?    1.9   0.2      0.17     2e+02      15      34 ..     299     317 ..     292     319 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4e-06
                HCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR  9 LdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                L++l e+++ lt + l + tgl+k t++ l+  L+e+G+v + 
  KIR65430.1 22 LELLLEQGP-LTRARLGELTGLSKVTASQLVERLEERGLVARV 63
                677777777.9*****************************986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.9
                 HHHHTS-HHHHHHH CS
    HTH_IclR  25 ArrtglpkStvhRl 38 
                 A  +g   S+v+R 
  KIR65430.1 133 ASGAGAELSSVRRV 146
                 66788889999995 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.17
                 TBSS-BHHHHHHHHTS-HHH CS
    HTH_IclR  15 apqeltlselArrtglpkSt 34 
                 a+++l l elArr++l  ++
  KIR65430.1 299 AGGPL-LDELARRLALGVAS 317
                 34444.99******997776 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   1.7   2.8e-05     0.033       1      72 [.      87     153 ..      87     162 .. 0.92
   2 ?    1.0   0.0      0.21   2.5e+02     180     245 ..     289     350 ..     282     361 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.8e-05
                  EEEEE-SSEEEEEEEETTTEEEEEEEE--TTS-HHH.........HHHHHHHHHHT--GGGECEE..EEEST CS
  BcrAD_BadFG   1 vGiDgGsTttkavlmdekgevlgrgitnsanlesvrfeaaekvleealtealerageeeadieetylvgtgy 72 
                  vG+D+G+  + a++ d  g v+ r    ++ ++     ++++v+ +a+ +a + ag e +++++++l++ g+
   KIR65430.1  87 VGVDVGAERVVAACADITGAVVSRVEQSTRDTD-----DPVGVVHNAVVQAASGAGAELSSVRRVVLGTPGL 153
                  8**********************9998888888.....5589***********************9999986 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.21
                  HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHHHHH.....HHHH CS
  BcrAD_BadFG 180 elrdalsggekaedIlaglhraialrvialisrsggvtdevtltGGvakneaavkelrklvkenyg 245
                   +r+a + g++    l++l+r +al v+++   ++     v+l G v ++ +a   l + v+ ++ 
   KIR65430.1 289 AVRAAIAAGTAGGPLLDELARRLALGVASTCVVLDPP--LVVLAGEVGQAGGAA--LAERVQHEVA 350
                  5788889999999999999999999999998877766..588888887775555..6666666655 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.6e-05     0.019      19      54 ..      27      62 ..      19      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.6e-05
                    HHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
  Fe_dep_repress 19 ekkvvktkdlaerLnvspssVsemlkkLekdGyvey 54
                    e+++ ++++l e  + s+ ++s+ +++Le+ G+v  
      KIR65430.1 27 EQGPLTRARLGELTGLSKVTASQLVERLEERGLVAR 62
                    7899999**************************975 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.5   2.6e-05     0.031       2      31 ..      30      59 ..      30      60 .. 0.97

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.6e-05
                E--HHHHHHHHTS-HHHHHHHHHHHHHTTS CS
         Crp  2 pmSRqdIAdylGlTrETVSRlLtrLrekGL 31
                p++R  ++++ Gl+ +T+S l+ rL+e+GL
  KIR65430.1 30 PLTRARLGELTGLSKVTASQLVERLEERGL 59
                79***************************9 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.7   1.5e-05     0.018       5      42 .]      18      55 ..      17      55 .. 0.96
   2 ?   -0.8   0.0       1.2   1.5e+03       6      16 ..     172     182 ..     172     187 .. 0.78
   3 ?   -3.4   0.1       7.4   8.8e+03      22      29 ..     306     313 ..     305     316 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.5e-05
  HTH_AsnC-type  5 DrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   Dr+ Le+L e++ ++ a+L+e +GlS  t+ + v+rLe
     KIR65430.1 18 DRAALELLLEQGPLTRARLGELTGLSKVTASQLVERLE 55
                   9999**************************99999997 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.2
  HTH_AsnC-type   6 rkILeaLqeda 16 
                    r +L+aL+ed 
     KIR65430.1 172 RGLLAALREDL 182
                    679******94 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 7.4
  HTH_AsnC-type  22 eLAervGl 29 
                    eLA+r+ l
     KIR65430.1 306 ELARRLAL 313
                    78998755 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   4.4e-05     0.053       5      43 ..      21      58 ..      18      69 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.4e-05
      HTH_11  5 ilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelg 43
                 lelL  ++gp++ ++L e +++S+ t  + +++Lee g
  KIR65430.1 21 ALELL-LEQGPLTRARLGELTGLSKVTASQLVERLEERG 58
                67888.66777**************************99 PP

>> SMC_ScpB  Segregation and condensation complex subunit ScpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.14      93     132 ..      26      68 ..      12      79 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
    SMC_ScpB  93 aykqpvtraeieeiRG...vnsdsvvrtLlerglieekgrkee 132
                   + p+tra++ e+ G   v+++++v++L ergl+ ++g++  
  KIR65430.1  26 LEQGPLTRARLGELTGlskVTASQLVERLEERGLVARVGEQAG 68 
                 5578*****99999884336699****************7643 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.5   0.00036      0.43      12      59 ..      19      65 ..      11      67 .. 0.86
   2 ?   -0.4   0.5         1   1.2e+03       8      35 ..     287     312 ..     281     319 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00036
                HHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECT CS
      HTH_20 12 RrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvre 59
                R++++ +L + ++lt + l e+ +lsk t+s+ ++ Lee gLv +v+e
  KIR65430.1 19 RAALELLL-EQGPLTRARLGELTGLSKVTASQLVERLEERGLVARVGE 65
                45555556.99**********************************998 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1
                 S-HHHHHHHHHHSTCTTB-HHHHHHHHT CS
      HTH_20   8 ahPvRrrilraLaraegltaselaerld 35 
                 a+ vR++i +    a+g  + ela+rl 
  KIR65430.1 287 ADAVRAAIAAGT--AGGPLLDELARRLA 312
                 788999999999..99999999999994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2625.89
//
Query:       KIR65431.1  [L=335]
Description: hypothetical protein TK50_08425 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-09   35.1   2.9    1.1e-08   34.7   2.9    1.1  1  ABC2_membrane_2  ABC-2 family transporter protein
  ------ inclusion threshold ------
      0.048   14.2   0.1      0.097   13.2   0.1    1.5  1  DinB_2           DinB superfamily
       0.13   12.3   0.1        4.9    7.2   0.0    2.3  2  Ac76             Orf76 (Ac76)
       0.13   12.2   6.4       0.21   11.6   0.3    2.6  3  ABC2_membrane_4  ABC-2 family transporter protein
       0.55   10.3   3.9       0.25   11.4   0.2    2.2  2  FtsL             Cell division protein FtsL
        5.1    7.9   0.0        5.1    7.9   0.0    4.2  3  DUF4282          Domain of unknown function (DUF4282)
        7.1    5.6  10.5        0.5    9.4   1.6    2.7  3  ABC2_membrane_3  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   2.9   4.4e-12   1.1e-08       1     288 []       1     334 [.       1     334 [. 0.84

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 4.4e-12
  ABC2_membrane_2   1 laiakkEfrdlvrsrrfllltvllplidvalaylkdlgsslqseakaikeatlaleyveaasasdeaedtdqdlkv.................. 76 
                      +++++ E+ +l + r + l+ vll+l  +a++++  l +s+  +  +i++a+ + +      + +++edt q+  +                  
       KIR65431.1   1 MNLVRAEWERLATRRFVRLMLVLLVLA-FAVTAVTTLVGSHRPSPDEIVAAQQSAAQ-----QRQALEDTFQQCLAavrgtlppeeaqdyppnc 88 
                      7999****9999999999999999999.***********************999444.....4456777777777779**************** PP

  ABC2_membrane_2  77 ..............................vstimavlipviaalfgadaiagEkergTlkllLskPvsRdeillgKfigglaigla.iavall 139
                                                    +  ++  ++++++ l ga +i  +   g ++ lL     R ++l +K+   l + l  + v++ 
       KIR65431.1  89 svfdpgqrdrlpvaadhlqgvftfadqarpLLYFLVAFLVLFGFLVGASYIGADLSTGGVANLLIWRPRRLAVLGAKLGTLLGA-LTlLSVLAS 181
                      ***************************999777777889999************************99******9997555555.555888888 PP

  ABC2_membrane_2 140 atvll.....alaiilalgivlaledllllvvasvlllllvvflalglllSsvarssreaaalalglfvvlailvpivlygvaellagpavpqe 228
                      a++l      + +  l + +  +++  l l+ +  l+l+l+ ++a+g++l+++ r ++ a+ ++ +  vv  +   +v+ +v  l+ g+     
       KIR65431.1 182 AAYLGvfwliGQGAGLPGATGGDFWPGLGLIWLRGLVLVLL-AAAAGFALATLGRRTAAALGAVTAYAVVWELGLRVVV-EVVGLPRGEDW--- 270
                      88888555555566666777777788788888888777766.69***********999999999999999988888888.55555555555... PP

  ABC2_membrane_2 229 indflsllsptsayntllneilagsdlna........lgstatnllilllllavllvlgy.vlFkrkDl 288
                            l ++ +a  t+ + ++  ++ +         +++ +   l++ll l+ +l +++  +F+r+Dl
       KIR65431.1 271 -----MLSTYLDAWLTGEARLSDATACRGvsgycdgnYQIGWVLGLAVLLTLVGVLTMAAfGAFRRRDL 334
                      .....5889999999999999998877779999999999999999999999987777777699999997 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.8e-05     0.097      51     101 ..      26      88 ..       6     131 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.8e-05
      DinB_2  51 r...........geeaprpgldpltppsaaealaylaevrarllallea.ltdadldrpltap 101
                 +           g++ p p    ++++saa+ +++l+++ +++la +++ l++++++++ ++ 
  KIR65431.1  26 LafavtavttlvGSHRPSPDEIVAAQQSAAQQRQALEDTFQQCLAAVRGtLPPEEAQDYPPNC 88 
                 04455555566688888777777888**********************978999999998875 PP

>> Ac76  Orf76 (Ac76)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0019       4.9      29      75 ..      19      67 ..      10      71 .. 0.71
   2 ?    2.5   0.1     0.058   1.5e+02       3      46 ..     120     139 ..     109     151 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0019
        Ac76 29 tllllfvlFiillnvyyi..kteStpadlytekakkikKkrdledafDa 75
                 +l+l+vl + +  v     ++  +p+++ + +    ++++ led+f  
  KIR65431.1 19 LMLVLLVLAFAVTAVTTLvgSHRPSPDEIVAAQQSAAQQRQALEDTFQQ 67
                35555555555444433323777889********************976 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.058
        Ac76   3 iilllialivlafildkneklsellltllllfvlFiillnvyyi 46 
                 +++l+ +l                        vlF +l+   yi
  KIR65431.1 120 LYFLVAFL------------------------VLFGFLVGASYI 139
                 34444444........................455555555555 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.025        63       1      46 [.       3      47 ..       3      65 .. 0.64
   2 ?   11.6   0.3     8e-05      0.21      58     175 ..     125     247 ..     104     250 .. 0.65
   3 ?   -2.4   0.5       1.5     4e+03     102     120 ..     308     326 ..     304     330 .. 0.59

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.025
  ABC2_membrane_4  1 liktEflKlkrskivwllvlaallvpllallyfnllgktgldpaef 46
                     l+++E+  l  +++v l+++++ ++++ ++++ +l+g++  +p+e 
       KIR65431.1  3 LVRAEWERLATRRFVRLMLVLL-VLAFAVTAVTTLVGSHRPSPDEI 47
                     6788888888888887744433.34444444445666666666555 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 8e-05
  ABC2_membrane_4  58 lllplilgi.iasylifrEeqndtlknLltiPvsrtklllaKlivllllsvllmlvtflitvlfallsgf.vgfsvkl...vle.llkkclelg 145
                       +  +++g  +++  i    + +++ nLl+    r ++l aKl +ll    ll++++ ++ + + +l+g  +g+ +++   ++  l  ++l   
       KIR65431.1 125 AF-LVLFGFlVGASYIGADLSTGGVANLLIWRPRRLAVLGAKLGTLLGALTLLSVLASAAYLGVFWLIGQgAGLPGATggdFWPgLGLIWLRGL 217
                      23.3333332566666777777777777765556899**********99999998888777766666664244443332235541444566666 PP

  ABC2_membrane_4 146 llvffavlpiialvllkksyvlpliltlvy 175
                      +lv++a ++ +al++l +  +++l+    y
       KIR65431.1 218 VLVLLAAAAGFALATLGRRTAAALGAVTAY 247
                      666666666799999999888888766666 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.5
  ABC2_membrane_4 102 llllsvllmlvtflitvlf 120
                      +l l+vll+lv +l +++f
       KIR65431.1 308 VLGLAVLLTLVGVLTMAAF 326
                      4555666666666555555 PP

>> FtsL  Cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   9.6e-05      0.25       9      60 ..      11      67 ..       3      69 .. 0.65
   2 ?   -2.0   0.4       1.4   3.7e+03      18      33 ..     308     323 ..     302     325 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.6e-05
        FtsL  9 llsvgkvlll...llllvlvsavavvlithqtR..qlvselekllserdkLeeewrn 60
                l++  +v l+   l+l+  v+av+++  +h     + v++++++ ++r++Le ++++
  KIR65431.1 11 LATRRFVRLMlvlLVLAFAVTAVTTLVGSHRPSpdEIVAAQQSAAQQRQALEDTFQQ 67
                5555555554112444445788888888886542266788***********998876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
        FtsL  18 lllllvlvsavavvli 33 
                 +l l+vl++ v+v+++
  KIR65431.1 308 VLGLAVLLTLVGVLTM 323
                 6778888998888765 PP

>> DUF4282  Domain of unknown function (DUF4282)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0     0.002       5.1       4      39 ..       8      43 ..       6      72 .. 0.85
   2 ?  -11.1  19.2         7   1.8e+04      23      73 ..     211     262 ..     111     264 .. 0.79
   3 ?   -0.0   0.1      0.59   1.5e+03      50      64 ..     311     325 ..     290     331 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.002
     DUF4282  4 FnrfitpkllkvlYilgivlialvllslivgafaal 39
                ++r++t+ +++++ +l++++ a+++++++vg+ + +
  KIR65431.1  8 WERLATRRFVRLMLVLLVLAFAVTAVTTLVGSHRPS 43
                899***************************998877 PP

  == domain 2  score: -11.1 bits;  conditional E-value: 7
     DUF4282  23 lialvllslivgafaalseslsagggllllllaviaf.llmilllRivlEfl 73 
                 li l  l+l++ a aa ++  ++g  + + l av+a  ++++l lR+v E++
  KIR65431.1 211 LIWLRGLVLVLLAAAAGFALATLGRRTAAALGAVTAYaVVWELGLRVVVEVV 262
                 4444444444333333334455566666666666554499999999999986 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.59
     DUF4282  50 lllllaviafllmil 64 
                 l++ll+++++l+m++
  KIR65431.1 311 LAVLLTLVGVLTMAA 325
                 233444444444443 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3      0.16   4.1e+02     237     261 ..      15      39 ..      11      55 .. 0.79
   2 ?    9.4   1.6    0.0002       0.5     162     273 ..     112     244 ..      47     251 .. 0.61
   3 ?    0.7   0.1     0.088   2.3e+02     235     258 ..     305     329 ..     278     330 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.16
  ABC2_membrane_3 237 nlglllllfllfglayialgyllss 261
                       ++ l+l++l+ ++a++a+++l++s
       KIR65431.1  15 RFVRLMLVLLVLAFAVTAVTTLVGS 39 
                      5677889999999999999999987 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0002
  ABC2_membrane_3 162 f......lvgliliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilllafgl...........gipfgnl 238
                      f      l+ +++++l+++++++ a++i  + +++    +l+   ++l+ + +k+ +++ +  l ++l+ + ++g+           g + g++
       KIR65431.1 112 FadqarpLLYFLVAFLVLFGFLVGASYIGADLSTGGVANLLIWRPRRLAVLGAKLGTLLGALTLLSVLASAAYLGVfwligqgaglpGATGGDF 205
                      3444444556667777777777777788888888888888888788888888888888888888888888877777778888998896666666 PP

  ABC2_membrane_3 239 glll....llfllfglayialgyllsslfknsetaqili 273
                      +  l    l  l+  l+++a g++l +l +++++a +++
       KIR65431.1 206 WPGLgliwLRGLVLVLLAAAAGFALATLGRRTAAALGAV 244
                      655510114444445555555666666666666666555 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.088
  ABC2_membrane_3 235 fg.nlglllllfllfglayialgyl 258
                      +g  lgl++ll l++ l+++a+g++
       KIR65431.1 305 IGwVLGLAVLLTLVGVLTMAAFGAF 329
                      4444667778888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1084  (0.0604607); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.50
# Mc/sec: 2035.31
//
Query:       KIR65432.1  [L=280]
Description: iron ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-26   92.6   0.0    3.7e-26   92.3   0.0    1.1  1  ABC_tran     ABC transporter
    5.4e-08   33.0   0.9     0.0015   18.4   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
     0.0069   16.8   0.7      0.019   15.4   0.7    1.8  1  AAA_16       AAA ATPase domain
     0.0083   15.9   0.0      0.018   14.8   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.028   12.6   0.0      0.033   12.4   0.0    1.0  1  DUF1633      Protein of unknown function (DUF1633)
      0.029   14.9   0.0      0.044   14.3   0.0    1.1  1  AAA_23       AAA domain
      0.041   13.8   0.0      0.085   12.8   0.0    1.5  2  RsgA_GTPase  RsgA GTPase
      0.045   14.0   0.1          1    9.6   0.0    2.1  2  AAA_22       AAA domain
      0.098   12.9   0.2       0.22   11.8   0.1    1.7  1  AAA_28       AAA domain
       0.13   11.8   0.1       0.24   11.0   0.1    1.4  1  cobW         CobW/HypB/UreG, nucleotide-binding domain
       0.13    9.7   0.0       0.16    9.4   0.0    1.0  1  DUF3584      Protein of unknown function (DUF3584)
       0.15   11.5   0.0        3.8    6.9   0.0    2.0  2  SMC_N        RecF/RecN/SMC N terminal domain
       0.21   12.0   0.0       0.52   10.7   0.0    2.0  1  AAA          ATPase family associated with various cellular a


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   2.7e-29   3.7e-26       1     136 [.      40     191 ..      40     192 .. 0.93

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 2.7e-29
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS..--S-TTSBHHHH.................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx.................. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe..pqlfpeltvren.................. 79 
                 l++v++ ++ +e+++++G+nGaGK+tLl+l ag l+pt G  ++ g+ + +++ ++lr +ig  +     q+  e +v++                   
  KIR65432.1  40 LHDVHWRVELDERWVVLGPNGAGKTTLLNLAAGRLHPTTGVAHVLGERIGRTDVNELRMRIGLSTAAlaGQVPAEERVADVvvtaawsvvgrwresydp 138
                 789***********************************************************9999964444444446666************999999 PP

                 HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  +++++ ++l +lg  +l+d++      +LS+G+++rv++aral+++p+llllDEp 
  KIR65432.1 139 GDEARARALLGQLGVGHLADRPF----GTLSEGERKRVQIARALMTDPELLLLDEPA 191
                 99999******************....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.4   3.8e-05     0.053       3      19 ..      54      70 ..      54     104 .. 0.84
   2 !   18.4   0.0   1.1e-06    0.0015     210     298 ..     126     224 ..     106     228 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.8e-05
      AAA_21  3 vliGpNgsGKSnLLdal 19
                v+ GpNg+GK++LL + 
  KIR65432.1 54 VVLGPNGAGKTTLLNLA 70
                789***********766 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.1e-06
      AAA_21 210 asvderlrer...........gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHP....kllrrllellkelsrngaQvi 293
                 +sv  r+re+            + +l  g+  ++p+  lS+G ++   ++ al  ++    lll+DEp +gL+      l++rl+el  +  +    ++
  KIR65432.1 126 WSVVGRWRESydpgdeararaLLGQLGVGHLADRPFGTLSEGERKRVQIARALMTDP---ELLLLDEPAAGLDLggreDLVARLAELAHDPDA--PALV 219
                 5555566666666666677778899999******************99999999988...9*************7777777777766644444..7888 PP

      AAA_21 294 ltTHS 298
                 l+TH 
  KIR65432.1 220 LVTHH 224
                 88885 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.7   1.4e-05     0.019      28     107 ..      54     190 ..      33     240 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
      AAA_16  28 llsGesGvGKsslvrellralekd.g.gif...lrgkcdqlesaipy......salaqalareellrqlldeaesaeleawrekleeala......... 106
                 ++ G+ G GK++l++ ++ +l  + g +++     g++d +  ++++      +ala +  +ee ++++   a+ + +++wre                
  KIR65432.1  54 VVLGPNGAGKTTLLNLAAGRLHPTtGvAHVlgeRIGRTDVN--ELRMriglstAALAGQVPAEERVADVVVTAAWSVVGRWRESY----Dpgdearara 146
                 69****************99999953344444444555555..222222223255555555666666666666666666666632....2222344444 PP

      AAA_16 107 ...........................................a 107
                                                            +
  KIR65432.1 147 llgqlgvghladrpfgtlsegerkrvqiaralmtdpelllldeP 190
                 44444455555555555555555555555544454444444443 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.3e-05     0.018      13      39 ..      41      67 ..      38      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.3e-05
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                ++  ++++l++  ++ Gp+G+GK+Tll
  KIR65432.1 41 HDVHWRVELDERWVVLGPNGAGKTTLL 67
                6667899999999*************8 PP

>> DUF1633  Protein of unknown function (DUF1633)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.4e-05     0.033     152     327 ..      43     222 ..      19     231 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.4e-05
     DUF1633 152 lelrqilremwavlpdsgvhprdal...lprlrlsenvskfrpprvGviyaglreeqrlrlprpaaalsgqdqrqertkdvlhkcsswisdprwsegls 247
                 +  r  l e w+vl  +g      l     rl+ +  v+++   r+G       +e r+r+   +aal+gq   +er  dv   +++w    rw e+  
  KIR65432.1  43 VHWRVELDERWVVLGPNGAGKTTLLnlaAGRLHPTTGVAHVLGERIGRTD---VNELRMRIGLSTAALAGQVPAEERVADV-VVTAAWSVVGRWRESYD 137
                 45566788889999877766554332114688889999999999988654...458899999999****************.67889*********986 PP

     DUF1633 248 .gtkleslilllrGghhsvgdfdparitrtcknqrnhffrdetlsvdpssklsndlat.f...srdriva...alavdpadpvivlpa 327
                  g +  ++ ll +     vg +         + +r+++    +l  dp   l ++ a+ +    r+  va    la dp  p++vl +
  KIR65432.1 138 pGDEARARALLGQL---GVGHLADRPFGTLSEGERKRVQIARALMTDPELLLLDEPAAgLdlgGREDLVArlaELAHDPDAPALVLVT 222
                 35667777777665...46665555555556666666666666777776554433222121114555554111345667777766665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.2e-05     0.044      24      37 ..      55      68 ..      53      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.2e-05
      AAA_23 24 ItGpNGaGKTTild 37
                + GpNGaGKTT+l+
  KIR65432.1 55 VLGPNGAGKTTLLN 68
                68**********97 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.2e-05     0.085     100     127 ..      51      78 ..      37      95 .. 0.83
   2 ?   -3.6   0.0       6.5     9e+03     101     111 ..     144     154 ..     141     155 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.2e-05
                  SEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelkt 127
                  +  v++G+ G+GK+tL+n  +++l+  t
   KIR65432.1  51 ERWVVLGPNGAGKTTLLNLAAGRLHPTT 78 
                  456899************9998876555 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.5
                  EEEEECSTTSS CS
  RsgA_GTPase 101 tsvlvGqSGvG 111
                    +l+Gq GvG
   KIR65432.1 144 ARALLGQLGVG 154
                  56899*****9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00076         1       9      30 ..      54      75 ..      52     111 .. 0.87
   2 ?    2.4   0.0      0.13   1.7e+02      60     128 ..     147     220 ..     134     228 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00076
      AAA_22  9 vvtGesGtGKTtllrrlleqld 30
                vv G+ G+GKTtll+  + +l+
  KIR65432.1 54 VVLGPNGAGKTTLLNLAAGRLH 75
                789***********98887774 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.13
      AAA_22  60 llralglelka..erlsseellealeqalrarav.ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                 ll +lg+++ a  + ++++e  ++  q +ra ++ +ell++DE    l+   +e+++  L +l+   + + + ++ 
  KIR65432.1 147 LLGQLGVGHLAdrPFGTLSEGERKRVQIARALMTdPELLLLDEPAAgLDlggREDLVARLAELAH--DPDAPALVL 220
                 55555555555542222222222233344444447789999998888977655888888877766..444444444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00016      0.22       2      35 ..      53      93 ..      52     117 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
      AAA_28  2 ivitGgestGKTtlleaLaar.....gypvv..pEaareil 35
                 v++G+ ++GKTtll+  a r     g+ +v  ++++r+ +
  KIR65432.1 53 WVVLGPNGAGKTTLLNLAAGRlhpttGVAHVlgERIGRTDV 93
                699************86664444445777666677777655 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00017      0.24       4      32 ..      54      83 ..      52     109 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
                EEEESTTCCHHHHHHHHH.CT--SS-EEEE CS
        cobW  4 vltGflGsGKTtLlnhll.enraglklavi 32
                v+ G+ G+GKTtLln    + +    +a +
  KIR65432.1 54 VVLGPNGAGKTTLLNLAAgRLHPTTGVAHV 83
                789***********9776655555555555 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00012      0.16      13      36 ..      46      69 ..      39      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00012
     DUF3584 13 eldldghtnieGtNaaGKTtLlrL 36
                +++ld++  + G N+aGKTtLl L
  KIR65432.1 46 RVELDERWVVLGPNGAGKTTLLNL 69
                57899****************987 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0027       3.8      28      41 ..      54      67 ..      42      71 .. 0.85
   2 ?    2.8   0.0      0.05        70     136     187 ..     163     210 ..      78     228 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0027
                EEEESTTSSHHHHH CS
                xxxxxxxxxxxxxx RF
       SMC_N 28 aivGpNGSGKsnll 41
                +++GpNG+GK+ ll
  KIR65432.1 54 VVLGPNGAGKTTLL 67
                799********987 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.05
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeks 187
                 +LS Ge++ v +a      + +p+ l llDe +a LD   ++ ++ +l e  
  KIR65432.1 163 TLSEGERKRVQIARA---LMTDPE-LLLLDEPAAGLDLGGREDLVARLAELA 210
                 688888887777654...344554.889*********999998888887765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00038      0.52       3      23 ..      55      75 ..      53     234 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00038
                EESSTTSSHHHHHHHHHHHHT CS
         AAA  3 lyGppGtGKTllakavakelg 23
                + Gp G GKT+l +  a  l+
  KIR65432.1 55 VLGPNGAGKTTLLNLAAGRLH 75
                78**************99974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 1808.83
//
Query:       KIR65433.1  [L=299]
Description: ribokinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-56  191.3  10.2    2.7e-56  191.1  10.2    1.0  1  PfkB          pfkB family carbohydrate kinase
     0.0033   16.9   0.4     0.0058   16.0   0.4    1.4  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.1  10.2     3e-60   2.7e-56       2     301 ..       4     287 ..       3     288 .. 0.95

  Alignments for each domain:
  == domain 1  score: 191.1 bits;  conditional E-value: 3e-60
                 EEEEEEEEEEEEEEEECSSH..TTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEET CS
        PfkB   2 tkvvviGealidliavsekl..egelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvd 98 
                 t+v+v+G+a++dl+a+  +l  +ge+v ++++++ +GG+gaN+Ava+ r ga+ af+ga+G D fG  l++ + ++gvdt +++++ +   g+al++v+
  KIR65433.1   4 TRVAVVGSANMDLVATAGALprPGETVLGSDFVMVPGGKGANQAVAAVRAGASCAFLGAIGSDAFGVTLRARITAAGVDTGHLRVVYG-ASGVALVMVS 101
                 789*********************************************************************************9999.99******** PP

                 TTSEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHHCTESEEEEEHHHHHHH CS
        PfkB  99 edgertivfnrgaaadltkeeleededlleeadllyisgllsselpeavleelaeaaknggtfdpnlldplgaqfkeallellaladllkpneeEleal 197
                 +dge+ i++ +ga+a++t    e  + ++  ad+l+       e+p+a+++e+a aa+++g  ++++l++++a  +++  ella +dll +ne+E++ l
  KIR65433.1 102 ADGENAILVTPGANAAFTG-LTEGELTAVRDADVLVAQL----EIPVATVTEAALAARAAG--TRVILNAAPA--RHVPAELLAAVDLLVVNENEARTL 191
                 *******************.4568888999999998776....******************..9********5..9*********************** PP

                 HTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE.TTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSS CS
        PfkB 198 tgekledieealaalhklkakgaktvvvtlGkeGalvve.kdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvqkkga 295
                 tg+  +d+  +l +++          v tlG eGa++ve   + ++vpav+ v+vvD+t+AGD+f++++++a+ eg +l+ a+  a a++a++v++ ga
  KIR65433.1 192 TGAGRDDPGALLTLVPR--------AVLTLGGEGAWYVErDAAPVHVPAVR-VDVVDSTAAGDAFTAALAVAWGEGRDLRAAVHWAAAAGAACVRRLGA 281
                 ****9999888888765........9*************88999*****76.*********************************************** PP

                 STCSCC CS
        PfkB 296 iaslpt 301
                 + +lp+
  KIR65433.1 282 SVALPS 287
                 998875 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.4   6.4e-07    0.0058     100     226 ..     158     270 ..     119     283 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.4e-07
                   SSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEE.TSSEEEEEEEE----S- CS
  Phos_pyr_kin 100 gselleeeavealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghlegeeavvtdvly.dgeeveeleaerietkn 195
                    + +l++   + +  eLl  +++++ N  Ea+ L+g         ++   +ll l  +aVl  Gg+     a+    ++ ++   ++++a r++  +
    KIR65433.1 158 TRVILNAAPARHVPAELLAAVDLLVVNENEARTLTG-------AGRDDPGALLTLVPRAVLTLGGEG----AW----YVeRDAAPVHVPAVRVDVVD 239
                   4445666667788889********************.......556677899999**********84....44....4448888999********** PP

                   -BTHHHHHHHHHHHHHHCTSSHHHHHHHHHH CS
  Phos_pyr_kin 196 thGtGCtlssaiaaelakgesleeAvkkAke 226
                      +G+++ +a+a    +g++l+ Av++A +
    KIR65433.1 240 STAAGDAFTAALAVAWGEGRDLRAAVHWAAA 270
                   ***************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2031.12
//
Query:       KIR65434.1  [L=218]
Description: hypothetical protein TK50_08445 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0098   16.1   0.7       0.11   12.8   0.1    2.6  3  DUF948          Bacterial protein of unknown function (DUF948
  ------ inclusion threshold ------
        0.1   13.3   0.0       0.27   11.9   0.0    1.7  1  PMC2NT          PMC2NT (NUC016) domain
       0.44   10.4   5.4        4.5    7.1   0.1    2.2  2  Apolipoprotein  Apolipoprotein A1/A4/E domain


Domain annotation for each model (and alignments):
>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   1.8e-05      0.11      36      83 ..      30      77 ..      14      82 .. 0.86
   2 ?    0.5   0.1      0.13   7.5e+02      49      76 ..      85     112 ..      73     128 .. 0.40
   3 ?   -0.4   0.0      0.23   1.4e+03      27      50 ..     156     179 ..     130     197 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
      DUF948 36 eelekqvdpilkevedllakvnelledvneklekvdplteavadlges 83
                + +  ++ ++l+ ve+ll+ +n +++ +++ l++ d++ + + +++++
  KIR65434.1 30 AAVPARAFAVLDGVEALLHRINGVVDRIEGTLDRTDRVLDDATEVAAA 77
                5566677789999****************************9999876 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.13
      DUF948  49 vedllakvnelledvneklekvdpltea 76 
                 +e++ a + +++++      +    ++a
  KIR65434.1  85 AERVSAAAGTVVAEADAVAHRAAGTVTA 112
                 3333333333333333322222222222 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.23
      DUF948  27 tldeaaatieelekqvdpilkeve 50 
                 ++de+ +  e+l+ ++ pil  ++
  KIR65434.1 156 LVDELPKLKEHLTADILPILATLD 179
                 344444444444444444444333 PP

>> PMC2NT  PMC2NT (NUC016) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.5e-05      0.27      56      91 ..      35      72 ..      13      73 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.5e-05
      PMC2NT 56 s..sklededdveekfksvvdvvDsllEkadtcLDelt 91
                    +l++++ + ++ + vvd ++  l+++d  LD +t
  KIR65434.1 35 RafAVLDGVEALLHRINGVVDRIEGTLDRTDRVLDDAT 72
                24467788889999*********************987 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   2.5     0.005        30     114     168 ..      63     122 ..      38     131 .. 0.59
   2 ?    7.1   0.1   0.00076       4.5      19      56 ..     133     170 ..     119     180 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.005
                     HHHHHHCHHHHHHH.....HHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSH CS
  Apolipoprotein 114 alkarlapyveelr.....qklaerleelkeslaphaeeveerlssrveelrekleeqae 168
                     ++   l+  +e +       + aer+ +   ++ ++a++v  r++ +v+++ e++ ++ae
      KIR65434.1  63 RTDRVLDDATEVAAaaavvVGEAERVSAAAGTVVAEADAVAHRAAGTVTAAAEAAGTAAE 122
                     222222222222222222246788888888888888888888888888888887777766 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00076
                     CHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC CS
  Apolipoprotein  19 qlaplaqelrdrlskeleelrarlraeleevrarlepy 56 
                     + ap+a +++++ls+e   +  rl  el  +++ l+++
      KIR65434.1 133 RGAPMATRFVEQLSHEEVTAAIRLVDELPKLKEHLTAD 170
                     5589*****************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1644.87
//
Query:       KIR65435.1  [L=160]
Description: hypothetical protein TK50_08450 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   14.7   0.8      0.023   14.3   0.8    1.3  1  TM140     TM140 protein family
       0.11   12.3   0.9        1.4    8.7   0.1    2.1  2  DUF5353   Family of unknown function (DUF5353)


Domain annotation for each model (and alignments):
>> TM140  TM140 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.8   2.5e-06     0.023      95     140 ..      68     112 ..      37     134 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.5e-06
       TM140  95 plllaqcnkdegeWklavgflaassvllagGlglflsyvwkWvrls 140
                  + la+  +d+g+W la  +laa++v  a  l  fl +   W+  s
  KIR65435.1  68 VVSLAWSAQDRGNWTLALIILAACAVG-ALALVPFLELPLGWLDRS 112
                 23489******************9973.445666887777777665 PP

>> DUF5353  Family of unknown function (DUF5353)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.017   1.5e+02      10      44 ..      15      49 ..       6      58 .. 0.75
   2 ?    8.7   0.1   0.00016       1.4      25      53 ..      72     100 ..      61     103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.017
     DUF5353 10 NavlvavlsagLGfgAYrkyarGeLtwkvvglwag 44
                  + v+  + +L+   Y ++arG+ t  v g + g
  KIR65435.1 15 ESIRVGGHTIALADVTYVWHARGRTTLAVRGRVIG 49
                4566777788888899*******999988887655 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00016
     DUF5353  25 AYrkyarGeLtwkvvglwagavGafavgd 53 
                 A+  + rG+ t  ++ l+a avGa+a++ 
  KIR65435.1  72 AWSAQDRGNWTLALIILAACAVGALALVP 100
                 999***********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1180.13
//
Query:       KIR65436.1  [L=257]
Description: enoyl-CoA hydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-73  245.9   0.1    4.3e-73  245.7   0.1    1.0  1  ECH_1          Enoyl-CoA hydratase/isomerase
      2e-32  113.0   0.6    3.2e-31  109.1   0.2    1.9  2  ECH_2          Enoyl-CoA hydratase/isomerase
  ------ inclusion threshold ------
       0.01   16.1   0.3      0.025   14.9   0.3    1.6  1  DIMCO_N        Dinitrogenase iron-molybdenum cofactor, N-term
       0.01   15.8   0.1        4.8    7.1   0.0    2.3  2  Peptidase_S49  Peptidase family S49
      0.074   12.0   0.0        0.1   11.6   0.0    1.2  1  SDH_sah        Serine dehydrogenase proteinase
       0.14   12.3   0.0       0.36   11.0   0.0    1.7  1  DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA b


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.7   0.1   1.4e-76   4.3e-73       1     250 [.       8     256 ..       8     257 .] 0.99

  Alignments for each domain:
  == domain 1  score: 245.7 bits;  conditional E-value: 1.4e-76
                 EEETTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHCHHHHHHHCCHHHHHHHHHHSSSEEEEEE-SEE CS
       ECH_1   1 eieagvaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeekakqallkeevlelwtklytvpkpviaavnGaa 99 
                 e+++g+  i+l+rP ++Nal++++ +El +a +++  d++vrav++ Gg+k+FaaGad+kema  ++ + a+    + + + +   +pkpv+aa+ G+a
  KIR65436.1   8 ETKDGIGTIRLDRP-PMNALNKQVQEELRAAAAEATADPEVRAVIVYGGEKVFAAGADIKEMAVMSYVDMAERAADLSSALGAFARIPKPVVAAITGYA 105
                 5789**********.**************************************************99******************************** PP

                 ETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHHHSCHHHH CS
       ECH_1 100 igGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaeklaekspaal 198
                 +gGG+elalacD +++a++a+ g++e+klG+ipgaggtq+lar vG ++A+ +++ g+ + aqeal++Gl d+vvp++++   a+el++  ++ + +al
  KIR65436.1 106 LGGGCELALACDWRVVAEDAKLGQPEIKLGVIPGAGGTQRLARLVGPARAKDLIMSGRMVDAQEALRIGLADRVVPAADVYAAAVELVTPYLNGPVQAL 204
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHHHHHHHHTCSH----- CS
       ECH_1 199 rqlkealnakledalaeqleaeaklfestfskddikeGlqaflEkrkpefed 250
                 r++k a++a l++ l+ +l+ e +lf ++f++dd++eG+ af+Ekrkp+f++
  KIR65436.1 205 RAAKLAVDAGLDMDLTSGLAWETQLFAALFATDDRREGMAAFVEKRKPDFTG 256
                 **************************************************97 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.2   1.1e-34   3.2e-31       1     185 [.      13     193 ..      13     211 .. 0.92
   2 ?    2.5   0.0     0.029        86     269     316 ..     209     253 ..     200     256 .. 0.79

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 1.1e-34
                 .EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEE CS
       ECH_2   1 vgvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivm 99 
                 +g+i L+rp  +NaL+ ++ ++l++a  e  +d+ev++v++ g gek f AG D+++++     + +e     ++  +   + a++pkpvva + G+++
  KIR65436.1  13 IGTIRLDRPP-MNALNKQVQEELRAAAAEATADPEVRAVIVYG-GEKVFAAGADIKEMAVMSYVDMAE---RAADLSSALGAFARIPKPVVAAITGYAL 106
                 5899****96.8*******************************.99************9988886644...467777778899**************** PP

                 THHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHH CS
       ECH_2 100 GgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpseklealeeaLa 185
                 GgG+ l++ +  rvv e++++  PE+++G++P  Gg+  L+rl g + ++ l ++G+ +++++al +gla+ +vp++++ a + +L 
  KIR65436.1 107 GGGCELALACDWRVVAEDAKLGQPEIKLGVIPGAGGTQRLARLVGpARAKDLIMSGRMVDAQEALRIGLADRVVPAADVYAAAVELV 193
                 *******************************************88688*****************************9988777775 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.029
                 HHHHHHTTT--HHHHHHHHHHHHHHHHHHSSHHHHHHHHTTS------ CS
       ECH_2 269 eqlrrgrklsslaevlrmElrlalrllaekDfveGvrallvdkdkkPk 316
                  +++ g ++ +l++ l+ E +l ++l+a++D  eG  a  v+k +kP 
  KIR65436.1 209 LAVDAGLDM-DLTSGLAWETQLFAALFATDDRREGMAAF-VEK-RKPD 253
                 566777888.599**********************9765.666.5665 PP

>> DIMCO_N  Dinitrogenase iron-molybdenum cofactor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.3   8.5e-06     0.025       3      46 ..     167     211 ..     165     224 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.5e-06
     DIMCO_N   3 revALRiALAaraLpgvdv.aqLlevLqerlgeplteekLakltv 46 
                 ++ ALRi+LA r+ p  dv a+ +e+++ +l+ p+++ + akl v
  KIR65436.1 167 AQEALRIGLADRVVPAADVyAAAVELVTPYLNGPVQALRAAKLAV 211
                 567***************945679999999**9999988888877 PP

>> Peptidase_S49  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0016       4.8       4      37 ..      92     125 ..      89     130 .. 0.86
   2 ?    6.4   0.0    0.0027       7.9     114     150 ..     156     192 ..     147     194 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0016
                    HTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT- CS
  Peptidase_S49   4 kakkPvvasaenvaaSggYylasaadkivanpst 37 
                    +  kPvva + ++a  gg  la a+d  v++  +
     KIR65436.1  92 RIPKPVVAAITGYALGGGCELALACDWRVVAEDA 125
                    667***********************99887766 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0027
                    HHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH CS
  Peptidase_S49 114 vdkiAegrvltgqqAlklgLvdelgtvddavaeleel 150
                     d i +gr+  +q+Al+ gL+d++    d++a + el
     KIR65436.1 156 KDLIMSGRMVDAQEALRIGLADRVVPAADVYAAAVEL 192
                    5677789999******************999988776 PP

>> SDH_sah  Serine dehydrogenase proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.3e-05       0.1     119     166 ..      94     141 ..      74     169 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.3e-05
     SDH_sah 119 kaktrvivphyamsGGtlialaadeiildenavlGpvdpqlgqypaas 166
                 + ++   +  ya+ GG+ +ala d  ++ e+a lG  + +lg +p a 
  KIR65436.1  94 PKPVVAAITGYALGGGCELALACDWRVVAEDAKLGQPEIKLGVIPGAG 141
                 4556677899*************************9999999999875 PP

>> DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.36       4      65 ..      56     130 ..      55     151 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
                    HHHHHHHTTS-TT-BEEHHHHHHHTT..............TSCHHHHHHHHHTSSBTTTSGG.GGEEBTTSBCCTT CS
  DNA_binding_1   4 qrVwellrqIpyGkvttYgeiAkllgk.............pkaaraVgqalaanplailvPc.HRVvgadgklggy 65 
                    ++V ++   I    v++Y ++A+++++             p  a   g+al+   +++ + c +RVv++d klg+ 
     KIR65436.1  56 EKVFAAGADIKEMAVMSYVDMAERAADlssalgafaripkPVVAAITGYALGG-GCELALACdWRVVAEDAKLGQP 130
                    578999999*************8888666666666444435555555555554.377777777*******999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1832.79
//
Query:       KIR65437.1  [L=540]
Description: hypothetical protein TK50_08465 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-44  150.9   4.4    3.1e-42  144.1   0.5    3.0  3  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    1.5e-31  109.3   0.0    7.8e-31  106.9   0.0    2.2  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    3.9e-23   81.7   0.4    1.1e-22   80.3   0.4    1.8  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
  ------ inclusion threshold ------
      0.085   12.7   0.4       0.37   10.7   0.0    2.3  2  ACP_syn_III   3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase
        2.6    8.7   5.7        3.3    8.3   1.2    3.1  3  HEV_ORF1      Hepatitis E virus ORF-2 (Putative capsid protei


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.1   0.5   8.6e-46   3.1e-42       3     164 ..       9     168 ..       8     175 .. 0.98
   2 ?   -0.8   0.1      0.29     1e+03     130     162 ..     241     273 ..     191     277 .. 0.71
   3 !    6.7   0.0    0.0014         5      60     145 ..     419     516 ..     407     527 .. 0.71

  Alignments for each domain:
  == domain 1  score: 144.1 bits;  conditional E-value: 8.6e-46
                   HHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEEE CS
  TPP_enzyme_N   3 vaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsgd 99 
                   ++++ + aL+a+gv+++f++ G+++ pl+da++ + g++++ +rhEq+a+faA+++a++ ++pg +++t+gpG+tn++ +l +A+ + +P+lvl g+
    KIR65437.1   9 GGQLALAALRAHGVREMFTLSGGHVFPLYDAAHTA-GFPLYDVRHEQSAVFAAEAVAKLNRRPGLAVLTAGPGVTNGVSGLTSAFFNASPVLVLGGR 104
                   789999*****************************.7************************************************************ PP

                   --CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHC CS
  TPP_enzyme_N 100 rptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvl 164
                   +p  + g g lq e+d+l l++pvtk+ae+v  ++++p+a+  A++tal++ +gPv+l++p++ +
    KIR65437.1 105 APQFRWGSGSLQ-EMDHLPLVAPVTKHAETVFGADDIPRAVGAALTTALTPHRGPVFLDFPLEAI 168
                   ************.************************************************9876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.29
                   -SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHH CS
  TPP_enzyme_N 130 vtspeelpealrrAirtalsgrpgPvylelpkd 162
                    + p + p a+++A r+alsg   +v++  p+d
    KIR65437.1 241 GALPPSHPLAFAKARRVALSGADVVVVVGTPLD 273
                   455666678888999999999988888888877 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0014
                   HHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEEE--CCCHHS..TC--T...-CCHH..........HCCCSSEEEE-SSGGGHHHHHHHH CS
  TPP_enzyme_N  60 ratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsgdrptslrgqgvlqqel...dqlal..........frpvtkyaervtspeelpealrrA 143
                    ++  ++v+++    +a   l+ + +  + ++P+++++g+++    +++ +  ++   d +a           ++ +  + e+v+++ +l++al+rA
    KIR65437.1 419 VSHPDRQVCVLMGDGAAGFSLMDVESLVRQKLPVVIVVGNNGIWGLEKHPMR-AMygyDVAADlqpglrydkvVEALGGAGETVEKAGDLAPALERA 514
                   344566777777766777778889999999*****************66666.44465444442333343333666666699999999999999999 PP

                   HH CS
  TPP_enzyme_N 144 ir 145
                   ++
    KIR65437.1 515 FA 516
                   86 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.43   1.5e+03     132     152 ..     141     162 ..     117     163 .. 0.72
   2 !  106.9   0.0   2.2e-34   7.8e-31       1     153 []     378     525 ..     378     525 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.43
                   HHHHHHHHHHHH.CSSSEEEEE CS
  TPP_enzyme_C 132 veeleealkeal.ekkgpalie 152
                   +  + +al +al  ++gp++++
    KIR65437.1 141 PRAVGAALTTALtPHRGPVFLD 162
                   3556667777778888888887 PP

  == domain 2  score: 106.9 bits;  conditional E-value: 2.2e-34
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTC CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfgg 97 
                   d G++  +a ++l+ ++p+++l++g +g++G gl++A+Ga + +pdr+v +++GDG+  ++l++++  vr++lp+++vv nN+++g+ ++ ++ ++g
    KIR65437.1 378 DGGDFVSYAGKYLEPAQPGTWLDPGPYGCLGTGLGYAMGARVSHPDRQVCVLMGDGAAGFSLMDVESLVRQKLPVVIVVGNNGIWGLEKHPMRAMYG 474
                   6789999999**************************************************************************************9 PP

                   CTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C  98 krksgpagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpaliev 153
                      +++    ++ +++ k++ealG  g +veka   +l++al++a++++ p l++v
    KIR65437.1 475 YDVAADL---QPGLRYDKVVEALGGAGETVEKA--GDLAPALERAFASGVPYLVNV 525
                   7766654...99*********************..******************987 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.4     3e-26   1.1e-22       1     136 [.     192     316 ..     192     317 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 3e-26
                   HHHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   + +aa+l++aa rpvi++G+ v   +a ++lr+ ae+l++Pv+t  mg+g++p +hpl         +ka++ al  aD+v+++G+ +d+   +g +
    KIR65437.1 192 VTRAAALIAAAHRPVIIAGSDVYAGDAVDALRAAAEALRVPVFTNGMGRGALPPSHPLA-------FAKARRVALSGADVVVVVGTPLDFRLAFGDF 281
                   579******************************************************88.......5899999*****************8888866 PP

                   TTTTTT-EEEEEESSCCCCTTCC--SEEEECTHHHHHHH CS
  TPP_enzyme_M  98 pefapeakiihididpaeigknyqvdlaivgdvketlea 136
                        +a+++h+   p++   +++++ +  gd++ +l+a
    KIR65437.1 282 G----DARVVHVVDAPSQRATHVTPAASPAGDLRLILTA 316
                   5....359**************************99986 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.7   6.2e+03      18      39 ..     196     216 ..     193     226 .. 0.68
   2 ?   10.7   0.0    0.0001      0.37      43      61 ..     421     439 ..     412     448 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.7
                  HHHHHTTS-SEEEEEEEEEGGG CS
  ACP_syn_III  18 daliesgaakrvLvigaetlsk 39 
                  +ali++ a++ v++ g+++++ 
   KIR65437.1 196 AALIAA-AHRPVIIAGSDVYAG 216
                  455554.588888999888765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0001
                  TTTHHHHTTB-EEEEEEEE CS
  ACP_syn_III  43 wkdrstavlfGDGAgAvvl 61 
                    dr+ +vl+GDGA+++ l
   KIR65437.1 421 HPDRQVCVLMGDGAAGFSL 439
                  469************9876 PP

>> HEV_ORF1  Hepatitis E virus ORF-2 (Putative capsid protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.66   2.4e+03      39      62 ..      76     100 ..      53     109 .. 0.64
   2 ?    8.3   1.2   0.00093       3.3      24      98 ..     123     197 ..     118     208 .. 0.87
   3 ?   -0.3   0.0      0.43   1.5e+03      48      78 ..     286     315 ..     282     329 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.66
    HEV_ORF1  39 aavpavvsgvtglilsp.sqspifi 62 
                 +a p v +gv+gl  +  + sp+++
  KIR65437.1  76 TAGPGVTNGVSGLTSAFfNASPVLV 100
                 4567777777777654314455555 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00093
    HEV_ORF1  24 rhrpvsrlaaavggaaavpavvsgvtglilspsqspifiqptpsppmsplrpgldlvfanppdhsaplgvtrpsa 98 
                    pv++ a +v ga  +p  v       l+p + p+f++      +s     l   +a  p  + p  vtr +a
  KIR65437.1 123 LVAPVTKHAETVFGADDIPRAVGAALTTALTPHRGPVFLDFPLEAIFSVGDAELPEAVAPAPIEADPEEVTRAAA 197
                 5679******************999999***********988888888888888888888898999999998876 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.43
    HEV_ORF1  48 vtglilspsqspifiqptpsppmsplrpgld 78 
                 v  ++ +psq    + p+ sp    lr  l 
  KIR65437.1 286 VVHVVDAPSQRATHVTPAASPA-GDLRLILT 315
                 5667789999999999999875.55665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.21s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4122.46
//
Query:       KIR65438.1  [L=330]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-27   95.5   0.0    5.8e-27   94.9   0.0    1.3  1  ABC_tran        ABC transporter
    4.7e-11   43.1   0.0    2.1e-06   27.8   0.0    2.1  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    1.8e-06   28.6   0.0      3e-06   27.9   0.0    1.4  1  DUF4162         Domain of unknown function (DUF4162)
    8.7e-05   22.1   0.0    0.00015   21.3   0.0    1.3  1  KdpD            Osmosensitive K+ channel His kinase sensor do
      9e-05   22.9   1.2      9e-05   22.9   1.2    1.8  2  AAA_16          AAA ATPase domain
    0.00095   18.8   0.2     0.0015   18.2   0.2    1.3  1  SRP54           SRP54-type protein, GTPase domain
     0.0048   17.3   0.0      0.049   14.1   0.0    2.4  1  AAA             ATPase family associated with various cellula
     0.0051   16.6   4.0      0.006   16.3   2.8    1.9  1  AAA_30          AAA domain
     0.0083   16.4   0.0      0.016   15.5   0.0    1.5  1  AAA_22          AAA domain
  ------ inclusion threshold ------
       0.03   13.9   0.1      0.058   13.0   0.1    1.4  1  Phosphoprotein  Vesiculovirus phosphoprotein
      0.039   14.5   0.0      0.055   14.0   0.0    1.2  1  AAA_23          AAA domain
      0.047   13.4   0.2       0.11   12.2   0.2    1.6  1  AAA_29          P-loop containing region of AAA domain
      0.052   13.5   0.1       0.15   12.0   0.1    1.9  1  BCA_ABC_TP_C    Branched-chain amino acid ATP-binding cassett
       0.22   11.1   0.3        4.2    6.9   0.1    2.6  3  cobW            CobW/HypB/UreG, nucleotide-binding domain
       0.28   11.1   0.0       0.41   10.6   0.0    1.2  1  Rad17           Rad17 P-loop domain
       0.34   10.6   0.0        9.5    5.8   0.0    2.0  2  AAA_15          AAA ATPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   0.0   5.2e-30   5.8e-27       2     136 ..      21     163 ..      20     164 .. 0.97

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 5.2e-30
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                   v+l +  g++++++G+nGaGK+t +++la ll  +eG+ ++ g d+++ + +++r+ ig   q +++++ lt  en             ++++++ +
  KIR65438.1  21 AGVDLAVPSGTVYGLLGPNGAGKTTTVRVLATLLAADEGHATVGGYDVRR-DAHRVRQLIGLTGQYASVDEALTGTENllligrllglsraDARARARE 118
                 6799**********************************************.9*************************************9888888*** PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +l++++l + +d+ +    +++SgG+++r+ la++l+ +p++l+lDEpt
  KIR65438.1 119 LLARFQLADAADRAA----KTYSGGMRRRLDLAASLVGRPQVLFLDEPT 163
                 *********999999....*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.1e-05     0.046       2      26 ..      33      58 ..      32      97 .. 0.78
   2 !   27.8   0.0   1.9e-09   2.1e-06     233     297 ..     132     193 ..      83     198 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.1e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl.d 26
                 +l GpNg+GK++  + l  l  +  
  KIR65438.1 33 YGLLGPNGAGKTTTVRVLATLLAAdE 58
                5799**************99876442 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 1.9e-09
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  a   S G++r l l+++l  ++    +l++DEp +gL+P+    l++ ++ l + g+ v+ltT+
  KIR65438.1 132 AAKTYSGGMRRRLDLAASLVGRP---QVLFLDEPTTGLDPRSRNDLWDTVRGLVTDGVTVLLTTQ 193
                 444569*****************...9***********************777777********7 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.7e-09     3e-06       1      80 [.     217     304 ..     217     305 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.7e-09
                 E-HHHHHTTS-SSEEEEE.-------.....--.-EEE..E-TTS-EEEEE-------------.----EEEEEEEE---HHHHHHHH CS
     DUF4162   1 GtleeiKrsygknrieve.adaeellee...pg.veev..eeeggelelkledeeaanellkal.tsgveirsFeeeePsLndIFiek 80 
                 Gt+ee+K++ g++ + ++ ad+++l+++    g       e +++++++ +++  + +++ ++l ++ +++ +++++ +sL+++F+++
  KIR65438.1 217 GTPEELKAKTGGQVLAIRpADPADLATVvaiAGeAAAAspEVAQSTVTVAVNGPGVLPAVVRRLdDAEIPVAELALRGASLDEVFLHL 304
                 9******************666666655333443333344666699******************77*******************987 PP

>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.3e-07   0.00015      38     142 ..     106     210 ..      92     221 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.3e-07
        KdpD  38 glvethgrketealleglevi...prkeveykgkeleeldldailarkpevvlvDelahtnapgsrhekryqdveelLeagidVittvnvqhleslndv 133
                 gl     r++ ++ll+++++    +r + +y+g   ++ldl a l  +p+v+++De      p sr+   ++ v+ l+  g+ V+ t   q le+  ++
  KIR65438.1 106 GLSRADARARARELLARFQLAdaaDRAAKTYSGGMRRRLDLAASLVGRPQVLFLDEPTTGLDPRSRN-DLWDTVRGLVTDGVTVLLT--TQYLEEADQL 201
                 566667788888888877766444677788999***********************98888777776.68**************966..4778888887 PP

        KdpD 134 vekitgvrv 142
                  ++i  v+ 
  KIR65438.1 202 ASEIAVVDH 210
                 777776655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   1.2   8.1e-08     9e-05      28     143 ..      34     161 ..      19     190 .. 0.70
   2 ?   -1.3   0.0       2.2   2.5e+03      85     100 ..     247     262 ..     192     314 .. 0.52

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 8.1e-08
      AAA_16  28 llsGesGvGKsslvrellralekdggiflrgkcdqlesa.............ipysalaqalareellrqlldeaesaeleawrekleealaavpelag 113
                  l G+ G GK++ vr l++ l +d+g+++ g +d  + a             ++ +  ++  ++  l+  ll  +++++++++re l+++++  +++a+
  KIR65438.1  34 GLLGPNGAGKTTTVRVLATLLAADEGHATVGGYDVRRDAhrvrqligltgqyASVDEALTGTENLLLIGRLLGLSRADARARARE-LLARFQ-LADAAD 130
                 589*********************9999999999983333444444444333333445555546566666666655544443333.444444.667777 PP

      AAA_16 114 aeasrllellkrll.allsrderplvlvlDd 143
                  +a+     ++r l   +s  +rp vl+lD+
  KIR65438.1 131 RAAKTYSGGMRRRLdLAASLVGRPQVLFLDE 161
                 7778888888888855555568899999996 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.2
      AAA_16  85 lldeaesaeleawrek 100
                 ++ ea++a++e ++ +
  KIR65438.1 247 IAGEAAAASPEVAQST 262
                 2222223233333332 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   1.3e-06    0.0015       3      48 ..      32      78 ..      30      96 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.3e-06
                EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTH.HHHH CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaA.veQL 48
                v+ l+G++GaGKTtt+  La ll +++ ++ +   D+ R a  v QL
  KIR65438.1 32 VYGLLGPNGAGKTTTVRVLATLLAADEGHATVGGYDVRRDAHrVRQL 78
                56699*********************999999999999977325666 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   4.4e-05     0.049       3      66 ..      35     161 ..      33     209 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.4e-05
                 EESSTTSSHHHHHHHHHHHHTHE..............................................................EEEEETTTCSSSST CS
         AAA   3 lyGppGtGKTllakavakelgve..............................................................fleisgsellskyv 39 
                 l Gp G GKT++++ +a+ l ++                                                              + ++++++  +   
  KIR65438.1  35 LLGPNGAGKTTTVRVLATLLAADeghatvggydvrrdahrvrqligltgqyasvdealtgtenllligrllglsradarararelLARFQLADAADRAA 133
                 78***************9985433333333433444444444444444444444444444444444444333333333333333333333333333344 PP

                 THHHHHHHHHHHHHHHTS.TSEEEEEET CS
         AAA  40 gesekkirelfkeakeka.kpsilfiDE 66 
                 +  +  +r  ++ a +   +p +lf+DE
  KIR65438.1 134 KTYSGGMRRRLDLAASLVgRPQVLFLDE 161
                 4444444444444433334556666666 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   2.8   5.4e-06     0.006      15      74 ..      28      89 ..      20     244 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.4e-06
      AAA_30 15 tsgdrvavltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvLaeelgi..eastia 74
                 sg  v  l Gp G+GKtt++++l+ +++a+ g+  +g     + A+++++ +g+  + ++++
  KIR65438.1 28 PSG-TVYGLLGPNGAGKTTTVRVLATLLAADeGHATVGGYDVRRDAHRVRQLIGLtgQYASVD 89
                455.488999**************999999989888888888888888888777633333444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.4e-05     0.016      10     103 ..      35     166 ..      29     201 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-05
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee..........erpevv......fvtlpsstsskdllrellralglelkaerlsseell..ealeqalrara 90 
                 + G+ G+GKTt++r l+  l +++ +++          +r++++      +  + +  + ++ l  + r lgl++ ++r++ +ell   +l++a++++a
  KIR65438.1  35 LLGPNGAGKTTTVRVLATLLAADEGHATvggydvrrdaHRVRQLigltgqYASVDEALTGTENLLLIGRLLGLSRADARARARELLarFQLADAADRAA 133
                 67******************99999999*******9986666667777653333333366666666777777766666666666662234455555555 PP

      AAA_22  91 v...................ielliiDEaqh.l 103
                 +                   +++l +DE    l
  KIR65438.1 134 KtysggmrrrldlaaslvgrPQVLFLDEPTTgL 166
                 555555555666666666666677777666656 PP

>> Phosphoprotein  Vesiculovirus phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   5.2e-05     0.058      45     116 ..     183     251 ..     177     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Phosphoprotein  45 edGvevqdkpsdaeieDdsDteseaeiednaGvsaqDkprelaadesGksLrltslellsgestvlavkarC 116
                      dGv v  ++++ e +D+    se  + d   v aq  p el+a+++G+ L +  +  +++ +tv a+  + 
      KIR65438.1 183 TDGVTVLLTTQYLEEADQL--ASEIAVVDHGRVIAQGTPEELKAKTGGQVLAIR-PADPADLATVVAIAGEA 251
                     5799999999999999986..689999************************985.66688888888877544 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     5e-05     0.055      20      43 ..      31      54 ..      14      89 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5e-05
      AAA_23 20 gltlItGpNGaGKTTildAiklaL 43
                 ++ + GpNGaGKTT ++ +   L
  KIR65438.1 31 TVYGLLGPNGAGKTTTVRVLATLL 54
                677899*********999887766 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2    0.0001      0.11      22      50 ..      29      58 ..      19      62 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0001
      AAA_29 22 kg.atlltGpsGsGKSTllDAiqalLvpak 50
                +g ++ l Gp+G+GK+T +  +++lL +++
  KIR65438.1 29 SGtVYGLLGPNGAGKTTTVRVLATLLAADE 58
                45577799***********99999998876 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00013      0.15       1      12 [.     212     223 ..     212     224 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
  BCA_ABC_TP_C   1 rvIAeGtPaEvr 12 
                   rvIA GtP+E +
    KIR65438.1 212 RVIAQGTPEELK 223
                   8*********75 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1    0.0038       4.2       2      21 ..      32      51 ..      31      80 .. 0.74
   2 ?    0.8   0.0      0.28   3.2e+02      99     136 ..     188     225 ..     179     233 .. 0.78
   3 ?   -1.2   0.0       1.1   1.3e+03      67      97 ..     281     312 ..     239     322 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0038
                EEEEEESTTCCHHHHHHHHH CS
        cobW  2 vtvltGflGsGKTtLlnhll 21
                v++l G+ G+GKTt ++ l 
  KIR65438.1 32 VYGLLGPNGAGKTTTVRVLA 51
                67899*********988776 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.28
                 HHTTSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHH CS
        cobW  99 vafteeelksdltldavvavvDaknleaeeekieekae 136
                 v++t++ l+++ +l + +avvD  ++ a+++++e ka+
  KIR65438.1 188 VLLTTQYLEEADQLASEIAVVDHGRVIAQGTPEELKAK 225
                 4566888899999999******9999888888777765 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.1
                 T-HHHHHHHHHHHHTT-SEEEEEECT.TTTHH CS
        cobW  67 edllkelealeereerldviliEttG.laePa 97 
                 +d+   +++l+ r ++ld +++  tG  aeP 
  KIR65438.1 281 DDAEIPVAELALRGASLDEVFLHLTGhRAEPD 312
                 57788888899999999999999999888885 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00036      0.41      50      71 ..      35      56 ..      20     102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00036
       Rad17 50 isGPsGCgkstvvkvLskelgi 71
                + GP G gk+t+v+vL+  l+ 
  KIR65438.1 35 LLGPNGAGKTTTVRVLATLLAA 56
                67**************988765 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0085       9.5      28      50 ..      35      57 ..      30      91 .. 0.88
   2 ?    2.6   0.0     0.081        91     323     363 ..     153     192 ..     142     192 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0085
      AAA_15 28 liGkNnsGKSsilealdlFlnnk 50
                l G+N++GK++ +++l  +l  +
  KIR65438.1 35 LLGPNGAGKTTTVRVLATLLAAD 57
                67**************9988755 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.081
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitT 363
                 ++ +l+++EP + L p   + l+++ + l+ d+   v++tT
  KIR65438.1 153 RPQVLFLDEPTTGLDPRSRNDLWDTVRGLVTDGV-TVLLTT 192
                 57799*************************9986.677776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2489.26
//
Query:       KIR65439.1  [L=269]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-28  100.1   9.9    1.1e-28  100.1   9.9    1.4  2  ABC2_membrane    ABC-2 type transporter
    4.1e-15   55.7  11.3    7.1e-15   55.0  11.2    1.3  1  ABC2_membrane_3  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   9.9   1.2e-32   1.1e-28       3     209 ..      25     234 ..      23     235 .. 0.91
   2 ?   -2.7   0.1      0.36   3.3e+03      25      41 ..     242     258 ..     239     261 .. 0.75

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 1.2e-32
  ABC2_membrane   3 ikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg..nsedglnr..pgllffsvlflafsaltsvapvferergvlerelvsplysls 94 
                    +++l +r++ q++++p+ + l   iqp+++ l+f++vfg +   +  ++l++  pg+++  +lf +  ++t+ +++ + ++gv++r+++ p+  ++
     KIR65439.1  25 TLTLAWRSLVQIKHNPMEL-LDLSIQPVMFVLLFTYVFGTAIsgSPGEYLTFalPGIIVQNALFAT--MTTGFGLNNDLTKGVFDRLRALPI-ARW 116
                    6799************777.*******************633444444444488************..99**********************.*** PP

  ABC2_membrane  95 ayvlakvlvelpvsllqalifllivyflvgldls....rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmp 186
                    a +++++l++ + ++  + +++ +  +l g++l       + +++lll+++laa ++++l+++l++  + ++++++ v++pl+++s +f+p+d+mp
     KIR65439.1 117 APLAGRILADTVKQAWSVSLLIGVGAIL-GFRLGngvlGLLGAFALLLAFSLAAAWISVLVGVLVSEPDKVQIFGFTVIFPLTFTSNVFVPTDRMP 211
                    **************99999999999998.****9755333999***************************************************** PP

  ABC2_membrane 187 kwlqwiaylnPltyavealrsnl 209
                    +wlq   ++nP+t + +alr+ l
     KIR65439.1 212 GWLQHWVEVNPVTILADALRGLL 234
                    ****999*************976 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.36
  ABC2_membrane  25 rliqplllalvfgtvfg 41 
                    + iq +++a+ +  vf 
     KIR65439.1 242 PAIQAMIWAVALAAVFA 258
                    56888888888888875 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0  11.2   7.9e-19   7.1e-15     158     344 ..      71     262 ..      45     263 .. 0.86

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 7.9e-19
  ABC2_membrane_3 158 nvasflvg.liliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilll..afglgipfg..nlglllllfl 246
                       +  f+++ +i+  ++f t++ + +++ ++ ++++  ++   ++ +++ + ++il+d ++ + ++ l++++  ++g+ +  g  +l+ ++ l+l
       KIR65439.1  71 EYLTFALPgIIVQNALFATMT-TGFGLNNDLTKGVFDRLRALPIARWAPLAGRILADTVKQAWSVSLLIGVgaILGFRLGNGvlGLLGAFALLL 163
                      556666663555555555555.9999**********************************999988888755588843544466888899**** PP

  ABC2_membrane_3 247 lfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffapglgllrlitgd.plweillsliilalfavvy 339
                       f+la++ ++ l+++l++ ++++qi+ f vi++l + + +++p++ +p++l+++  ++P + ++++l  l+ g     + ++++i+ +++a+v+
       KIR65439.1 164 AFSLAAAWISVLVGVLVSEPDKVQIFGFTVIFPLTFTSNVFVPTDRMPGWLQHWVEVNPVTILADALRGLLVGGpVVGPAIQAMIWAVALAAVF 257
                      ********************************99999999999****************************9996666788************9 PP

  ABC2_membrane_3 340 lllal 344
                        la+
       KIR65439.1 258 APLAV 262
                      88775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2124.52
//
Query:       KIR65440.1  [L=134]
Description: hypothetical protein TK50_08480 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-12   45.4   4.4      9e-12   44.7   4.4    1.3  1  PLDc_N    Phospholipase_D-nuclease N-terminal
  ------ inclusion threshold ------
       0.25   11.4   2.6       0.38   10.8   2.6    1.2  1  MARVEL    Membrane-associating domain


Domain annotation for each model (and alignments):
>> PLDc_N  Phospholipase_D-nuclease N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   4.4     1e-15     9e-12       1      42 []      14      59 ..      14      59 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 1e-15
      PLDc_N  1 ilwiialidiirdrnpss.....klaWllvilflPvlGailYllfGr 42
                +l++ ali+++   ++++     ++aW+l+ilf+P++G i+++++Gr
  KIR65440.1 14 ALAVCALISCLS-AEEGAirglpRIAWVLIILFFPLVGSIAWFIAGR 59
                699*********.6666666677***********************9 PP

>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.6   4.2e-05      0.38      51      94 ..      11      58 ..       2      61 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.2e-05
      MARVEL 51 fsflyalfllvlylfk....nsaftsilwplidlivdalaallwlvaf 94
                + +++a+++l+ +l+      + +++i+w li l++ ++ ++ w++a+
  KIR65440.1 11 VQIALAVCALISCLSAeegaIRGLPRIAWVLIILFFPLVGSIAWFIAG 58
                334445555555555565665667888888888888888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 952.69
//
Query:       KIR65441.1  [L=105]
Description: hypothetical protein TK50_08485 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-10   39.9   8.4    4.3e-10   39.9   8.4    1.8  2  DUF202    Domain of unknown function (DUF202)
  ------ inclusion threshold ------
      0.085   13.4   0.2      0.085   13.4   0.2    3.7  5  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   8.4   4.8e-14   4.3e-10       1      60 [.      10      67 ..      10      72 .. 0.78
   2 ?   -0.1   0.3      0.15   1.3e+03      45      57 ..      85      97 ..      70     104 .. 0.55

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 4.8e-14
      DUF202  1 rdglAnERTfLaWlRtslalialglallrffltgepsalgkilglilivlgiltllvglv 60
                ++gl++ERT LaW+R +lal+a+ ++ +r+ ltg+ +  ++++g++ ++ ++ +l++ + 
  KIR65441.1 10 DPGLQPERTRLAWRRSLLALTAVTVLTVRLALTGDATG-AVLAGAAVAGWAA-ALALCWG 67
                79****************************99999888.5555555555444.4444444 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.15
      DUF202 45 lilivlgiltllv 57
                l+l++++ +tl+v
  KIR65441.1 85 LALAAAWQATLGV 97
                3344444333333 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   9.5e-06     0.085       1      15 [.      22      36 ..      22      36 .. 0.96
   2 ?   -2.6   0.2       1.1   9.8e+03      12      16 ..      39      43 ..      39      43 .. 0.79
   3 ?   -1.9   2.2      0.66   5.9e+03      10      10 ..      53      53 ..      45      65 .. 0.61
   4 ?   -1.9   0.2      0.67     6e+03      12      16 ..      85      89 ..      83      89 .. 0.53
   5 ?   -2.9   0.6       1.5   1.3e+04       8      14 ..      95     101 ..      94     101 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.5e-06
      LPAM_1  1 MKKillalgalllLs 15
                ++++llal+a+ +L+
  KIR65441.1 22 WRRSLLALTAVTVLT 36
                7*************8 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.1
      LPAM_1 12 llLsG 16
                l+L+G
  KIR65441.1 39 LALTG 43
                68998 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.66
      LPAM_1 10 a 10
                a
  KIR65441.1 53 A 53
                2 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.67
      LPAM_1 12 llLsG 16
                l+L++
  KIR65441.1 85 LALAA 89
                55554 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 1.5
      LPAM_1   8 lgalllL 14 
                 lg ll+L
  KIR65441.1  95 LGVLLVL 101
                 5666766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 728.72
//
Query:       KIR65442.1  [L=130]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-12   46.0  14.7    1.8e-10   41.1  14.7    2.1  1  DUF202    Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1  14.7     1e-14   1.8e-10       1      67 [.      24      90 ..      24     129 .. 0.69

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1e-14
      DUF202  1 rdglAnERTfLaWlRtslalialglallrffltgepsalgkilglilivlgiltllvglvrylrrqr 67
                r  lAnERTfLaWlRt+lal+a gla ++f  +   ++l+ +++++l++lg  +++ ++  + r++r
  KIR65442.1 24 RFSLANERTFLAWLRTGLALVAGGLAAAQFLPPLPLAHLREAIAVALLLLGGTVAVRAVDHWARTER 90
                6779*************************97744455555666666666666665555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 927.95
//
Query:       KIR65443.1  [L=265]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.011   15.9   3.0      0.011   15.9   3.0    1.9  2  Acetyltransf_6  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.11   1.9e+03      28      47 ..      59      79 ..      44     102 .. 0.67
   2 ?   15.9   3.0     6e-07     0.011      19     130 ..     128     234 ..     122     240 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.11
  Acetyltransf_6 28 pedleallelfraqwarr.pd 47
                     ++l+al+++ ++++++r ++
      KIR65443.1 59 GAALDALIARQVELFRARgES 79
                    577888888888887777533 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 6e-07
  Acetyltransf_6  19 evrfrvatdpedleallelfraqwarrpdvfadpltraflrdllaalaargalrlyvlrldgrpv.Avalglrsgdrlyywlggy.dpelaklsp 111
                     +vr+r  t ++dl+++++  ++ w++  d+ a     + l+  +aa   ++++ ++v+++++++v A+++ +++g+ +  ++gg   + +++ ++
      KIR65443.1 128 GVRLREVTARADLDRIMAMEEEVWGESRDHLA-----DGLEKEIAAD--PQSITVVVAEAGETVVsAGWVRYVAGTGFATLWGGStLAQWRRRGI 215
                     799999********************945554.....4444444444..79**********9977366788899988886666663788****** PP

  Acetyltransf_6 112 gllllweliedaaeeGlrr 130
                     ++ l+ + ++ aa++G++ 
      KIR65443.1 216 YRALVGYRARLAAQRGRTL 234
                     ****************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1865.71
//
Query:       KIR65444.1  [L=137]
Description: hypothetical protein TK50_08500 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 962.16
//
Query:       KIR65445.1  [L=259]
Description: electron transfer flavoprotein subunit beta [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-49  166.5   4.1    6.9e-49  166.2   4.1    1.1  1  ETF       Electron transfer flavoprotein domain
  ------ inclusion threshold ------
      0.025   15.1   0.1       0.84   10.1   0.1    2.5  1  Usp       Universal stress protein family
      0.084   12.8   0.1       0.13   12.2   0.1    1.3  1  DeoRC     DeoR C terminal sensor domain


Domain annotation for each model (and alignments):
>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.2   4.1   1.2e-52   6.9e-49       2     181 ..      24     207 ..      23     208 .. 0.97

  Alignments for each domain:
  == domain 1  score: 166.2 bits;  conditional E-value: 1.2e-52
                 EEEE-EC.CCCE-HHHHHHHHHHHHHHHHHT--EEEEEEES....S-CHHHHHHCT-SEEEEEE-GGGSS--CCHHHHHHHHHHHHC--SEEEEESSCC CS
         ETF   2 lvlaehgvdgklnpvdlealeaArrlkekaggevtavvvGppeaeealrealaamGadkvilvddpalagydaeatakalaalikkedpdlvlagatai 100
                 +++++ ++++++n++d++a+e+A+++ke++ggevt++++Gp++a e++r+al+ mG d +++v d+al g+ a at+k+laa++ ++++dlv++ga+++
  KIR65445.1  24 NTVDRGSANNVINEMDEYAIEEALKIKEAHGGEVTVLTMGPDRATESIRKALS-MGPDAAVHVVDDALHGSCAVATSKVLAAALGQLNADLVICGAEST 121
                 68999999*********************************************.********************************************* PP

                 .H..HHHHHHHHHHCT-EEEEEESEEEEETCCEEEEEECCCCTEEEEEE-TSSSEEEEE-TTSS--.....--S-TT---EEEE--HHH CS
         ETF 101 .g..kqvaprlAalLgvplitdvteleveggkltvtRpieggnglaevveadlpavltvrpgafep.....aaimaakkkeveevevad 181
                  g  + ++ ++A++Lgv  +t + +l+v+g +ltv+R++e   g+ evv+a++pav++v  +++ep     ++imaakkk+v+++++ad
  KIR65445.1 122 dGrvQVMPHMIAERLGVAALTGARKLTVDGSTLTVERQTEE--GY-EVVTASTPAVVSVWDTINEPrypsfKGIMAAKKKPVRTLSLAD 207
                 98*6677779*******************999*********..**.****************************************998 PP

>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00014      0.84      14      66 ..      38      90 ..      36     140 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00014
                HHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHH CS
         Usp 14 eskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeael 66
                  ++A+e Al+  +a+g+e+++l+  ++ra ++   a +  ++++     ++l
  KIR65445.1 38 MDEYAIEEALKIKEAHGGEVTVLTMGPDRATESIRKALSMGPDAAVHVVDDAL 90
                5689************************9999999988888887776665555 PP

>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.1e-05      0.13      43     113 ..      56     131 ..      41     149 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.1e-05
       DeoRC  43 nltvvTnslnvaee.....LsekedikvillGGevrkkseslvgplaeealrqfnvdkaflgangidaegglttsd 113
                 ++tv T + + a+e     Ls  +d+ v+++   ++ +   +++++   al q+n+d++++ga++ d + +++ + 
  KIR65445.1  56 EVTVLTMGPDRATEsirkaLSMGPDAAVHVVDDALHGSCAVATSKVLAAALGQLNADLVICGAESTDGRVQVMPHM 131
                 788888888777651111166666******************************************9987776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.49
# Mc/sec: 1590.43
//
Query:       KIR65446.1  [L=259]
Description: anti-sigma factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-25   90.7  15.1    1.9e-25   90.2  15.1    1.2  1  RskA       Anti-sigma-K factor rskA
  ------ inclusion threshold ------
       0.49   10.8   3.6       0.19   12.1   1.1    1.6  2  DMRT-like  Doublesex-and mab-3-related transcription factor C


Domain annotation for each model (and alignments):
>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2  15.1   2.1e-29   1.9e-25       1     180 []      59     255 ..      59     255 .. 0.78

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 2.1e-29
                 --HHHHHHHHHTT-X.............................................XXXXXXXXXXXXXX..........XXXXXXXXXXXXXXX CS
        RskA   1 Ppprlwarilaalaatpqaaaaaaaaaaapppaaapaararr..................laaaaAaalllvlgqlavasaaldplrqsaaqaeavvav 81 
                 Pp+++w++i a++aa+++ ++   ++aa pp++a+++ ++++                  +++aaAaa++ v+g       + + l +sa++++   +v
  KIR65446.1  59 PPEHVWQGIVAEVAAAEALPSLGDRRAAGPPATAPTPETGAArpgraggrrrrlprwavtAVTAAAAAAVGVVG-------TFAVLSGSADEPRPPERV 150
                 9**************88888888888885555544444444458888888999999999877788888888888.......777777777777776666 PP

                 XXXX..........XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX..XXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        RskA  82 laap..........daagatatvvdsasggalvldvsglpalpagkvyqlWli.paggkpvslGvl.eaggsatltlpagpdlgaaaavaVTlEpaGGs 168
                 + a+           +a + a+v+++   ++l l+v++lpa    ++y++Wli pa  ++ s+Gvl +++g+a l+lp+  dl  +++v+V+ E+ +  
  KIR65446.1 151 VLASgsltaygttpRDASGDARVFTD---NQLHLHVANLPAV--PGYYEVWLIdPATMRMFSVGVLnAGTGDALLPLPPNVDLRTYSVVDVSAEQYDNK 244
                 55553566666654333344444443...4666777777654..6**************************************************9999 PP

                 XXX..XXXXXXX CS
        RskA 169 qPtpsgpvvarg 180
                  P++sg++++rg
  KIR65446.1 245 -PAHSGDSLLRG 255
                 .********997 PP

>> DMRT-like  Doublesex-and mab-3-related transcription factor C1 and C2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.1   2.2e-05      0.19      55     117 ..      72     135 ..      67     137 .. 0.77
   2 ?   -3.2   0.1       1.2   1.1e+04      96     113 ..     140     157 ..     138     159 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.2e-05
   DMRT-like  55 EAAeALlaLrdSpq..appdsisllqpcgppapagdrglqspspslrprpapsvslhiGrLgcis 117
                  AAeAL +L d +   +p++++++   ++ p+ ag+r ++ p  +++  +a  ++  +G +g+ +
  KIR65446.1  72 AAAEALPSLGDRRAagPPATAPTPETGAARPGRAGGRRRRLPRWAVTAVTAAAAAA-VGVVGTFA 135
                 59****8886655511667777888889999***********99999887776665.88888766 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.2
   DMRT-like  96 pslrprpapsvslhiGrL 113
                 ++ +prp + v l+ G+L
  KIR65446.1 140 SADEPRPPERVVLASGSL 157
                 567899999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1826.01
//
Query:       KIR65447.1  [L=201]
Description: RNA polymerase subunit sigma-70 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-17   61.3   0.4      1e-16   60.4   0.4    1.5  1  Sigma70_r2    Sigma-70 region 2
    7.1e-15   54.4   0.0    1.2e-14   53.7   0.0    1.4  1  Sigma70_r4_2  Sigma-70, region 4
    1.4e-13   50.2   1.5    3.1e-13   49.0   0.0    2.2  2  Sigma70_r4    Sigma-70, region 4
    3.4e-08   33.6   0.1    5.4e-08   32.9   0.1    1.3  1  Sigma70_ECF   ECF sigma factor
     0.0088   15.6   0.0      0.033   13.7   0.0    1.9  2  HTH_24        Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
       0.15   11.6   0.0       0.28   10.7   0.0    1.4  1  GerE          Bacterial regulatory proteins, luxR family


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.4   3.5e-20     1e-16       2      70 ..      32      99 ..      31     100 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 3.5e-20
                HHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2  2 verylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70
                ++ry + v++la + l +++daeD++Q +f+++w ++++fdp+rg s+  wll i r+++ drlR  +r
  KIR65447.1 32 YDRYGRAVLHLATSTLANRSDAEDVTQATFVAAWLGRDTFDPSRG-SLIGWLLGIGRRKVVDRLRASAR 99
                89*******************************************.*******************9876 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   4.1e-18   1.2e-14       5      54 .]     130     179 ..     126     179 .. 0.93

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 4.1e-18
                   HHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   5 realaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                    + la+Lp +qr+ ++l ++++l++++IA ++g++ gtVks+++R+++ L
    KIR65447.1 130 ADELARLPDDQRRMLELAFYDDLTHQQIATVTGVPLGTVKSHIRRGMASL 179
                   5679******************************************9866 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.4      0.56   1.7e+03      34      49 ..      93     108 ..      82     109 .. 0.64
   2 !   49.0   0.0     1e-16   3.1e-13       2      49 ..     133     180 ..     133     181 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.56
                 HHHHHHHHHHHHHHHH CS
  Sigma70_r4  34 rerVrqiekrAlrkLR 49 
                 r r++ +e+r ++ +R
  KIR65447.1  93 RLRASARENRVVETVR 108
                 4566677777666666 PP

  == domain 2  score: 49.0 bits;  conditional E-value: 1e-16
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLR 49 
                 La+Lp+++r+ lel f+++lT+++I+ + g+++++V+++++r++  L+
  KIR65447.1 133 LARLPDDQRRMLELAFYDDLTHQQIATVTGVPLGTVKSHIRRGMASLK 180
                 89********************************************98 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.1   1.8e-11   5.4e-08       8     173 ..      17     173 ..      14     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.8e-11
  Sigma70_ECF   8 leqvkdGdaeaaeqllelvydeLrrlagsklknerreetledtaLvfeaflrl.vdkekfpdlsgrdhlfalaaeamrrilidhaRrrkrqkRGGdvv 104
                   e  + Gd++a  q + ++   +  la s l+n    e+  +       f+++ ++++ f    +r+ l + ++ + rr+++d++R+  r+ R  ++v
   KIR65447.1  17 AERFRAGDEAALRQAYDRYGRAVLHLATSTLANRSDAEDVTQAT-----FVAAwLGRDTFD--PSRGSLIGWLLGIGRRKVVDRLRASARENRVVETV 107
                  567899*************************8877777665554.....444404444444..589*******************************9 PP

  Sigma70_ECF 105 raeldeeedsvdsdspdelleLdealerllsldpeqarlvelrkleGlsveEiAeklgvskrtverrla 173
                  r+   + + +   ++pd +++     ++l++l+++q+r +el++ + l+ + iA++ gv   tv+ + +
   KIR65447.1 108 RQL-PDPAPT--GPDPDTVVDRLVVADELARLPDDQRRMLELAFYDDLTHQQIATVTGVPLGTVKSHIR 173
                  987.444433..57777777777777888999*****************************99997655 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.75   2.2e+03      13      26 ..       5      19 ..       2      20 .. 0.73
   2 !   13.7   0.0   1.1e-05     0.033      17      40 ..     151     174 ..     150     174 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.75
      HTH_24 13 qknpr.isqreLAer 26
                q++p   +q +LAer
  KIR65447.1  5 QQEPEpPPQDDLAER 19
                56666568999**98 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.1e-05
      HTH_24  17 risqreLAerlglSpstvnrrlkr 40 
                 +++ +++A  +g++++tv+ +++r
  KIR65447.1 151 DLTHQQIATVTGVPLGTVKSHIRR 174
                 589*******************98 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.5e-05      0.28      14      45 ..     148     179 ..     138     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.5e-05
                 HCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHH CS
        GerE  14 laeGksnkeIAeelniSekTVkvhksnimkKL 45 
                 +++ ++ ++IA   ++   TVk+h+++ m  L
  KIR65447.1 148 FYDDLTHQQIATVTGVPLGTVKSHIRRGMASL 179
                 568899********************988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1327.61
//
Query:       KIR65448.1  [L=277]
Description: hypothetical protein TK50_08525 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-26   94.1   2.4    1.1e-23   84.3   0.2    2.2  2  DUF4397   Domain of unknown function (DUF4397)


Domain annotation for each model (and alignments):
>> DUF4397  Domain of unknown function (DUF4397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.2   6.3e-28   1.1e-23       1     120 [.      36     151 ..      36     152 .. 0.92
   2 !    9.8   0.1   7.2e-05       1.3      37      99 ..     170     227 ..     153     234 .. 0.79

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 6.3e-28
     DUF4397   1 AtvrvvhaspdapsvDvyvngkkvlknvaygdvtgylqvpaGqytielnpagnkikagttvallnvditleagteytvaavgsa.aalellvleddstk 98 
                 ++v+vvh++pd ++vDvyvngkk+l+n++ gdv g+l++++G+y+i+l++ g+   a  +++l+ +d ++ +g + ++aa+ +  ++++++ + +d++k
  KIR65448.1  36 SKVSVVHGIPD-TPVDVYVNGKKTLDNFKPGDVAGPLDLEQGAYDIALTKPGE---ALDKAILTVDDAEVPGGANISLAAHLDEaGKPKITPFANDTAK 130
                 68*********.9***********************************55555...34556688899**********99998777************** PP

     DUF4397  99 paagtarvrfvnlspdapavDV 120
                  +ag+ar+ + +++ +apavDV
  KIR65448.1 131 VDAGKARLIVRHTA-AAPAVDV 151
                 **************.9*****9 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 7.2e-05
     DUF4397  37 lqvpaGqytielnpagnkikagttvallnvditleagteytvaavgsaaalellvleddstkp 99 
                  +v+aG+ + +++ ag+      tva+  +d++l++gt+  v+a+gsa+a  l ++ ++ t  
  KIR65448.1 170 ADVDAGTVSADVVLAGT-----DTVAIGPADLDLKEGTATIVYAIGSAEAKNLDLVAQTITGL 227
                 57899999999977776.....46779*********************666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2087.58
//
Query:       KIR65449.1  [L=221]
Description: peptidase C60 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-14   53.7   0.0    2.1e-14   53.4   0.0    1.1  1  Sortase   Sortase domain
  ------ inclusion threshold ------
       0.13   11.9   0.7       0.18   11.4   0.0    1.6  2  DAGK_cat  Diacylglycerol kinase catalytic domain


Domain annotation for each model (and alignments):
>> Sortase  Sortase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   2.4e-18   2.1e-14       1     124 [.      79     220 ..      79     221 .] 0.81

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 2.4e-18
                 EEECCGTEEEEEEE.SCSSCHCTT.......SEEECST.T-BTTSSSEEEEEEE...BSSTTSTTGGGGGGHTT-EEEEEESSSEEEEEEEEEEEEEET CS
     Sortase   1 lsipalginlpvle.gtdeedlka.......gagflde.sakpgeagnfvlaGH...rvgkgavFsdLkklekgdaivvetkkgksyvYrvfsveivtp 87 
                 l+ipa+++++ v   g++ ++ ++        +g++++      +ag +v+aGH     +++  F +L++l +gd+++ +  +g++++Yrv + e   +
  KIR65449.1  79 LRIPAIDVTARVDPvGVNPRTDEFevppsvdRIGWYRYgPGLSADAGSVVIAGHvdsAEQGKGAFFRLRELDRGDTVTATGGDGTTREYRVVAREEYAK 177
                 68999999998888754444444445568999******766677899*******75426788899******************************9999 PP

                 THG...GGGSHHTTSEEEEEEEES.SSSS..S.TSEEEEEEEEE CS
     Sortase  88 dev...svldptpgdaiLtLiTCt.pfds..e.nneRlivhAkl 124
                 +++   + ++  +g+++LtLiTC  pfd   + + ++++v+A +
  KIR65449.1 178 TKIpldRYFA-RDGSPRLTLITCGgPFDPqtRrYRDNIVVTAVP 220
                 9997744344.569**********8887787459999***9986 PP

>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1      0.78     7e+03      46      63 ..      11      28 ..       4      28 .. 0.67
   2 ?   11.4   0.0     2e-05      0.18      41      73 ..     136     169 ..     121     201 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.78
                HHHHHHHHCC-SEEEEEE CS
    DAGK_cat 46 elakeakeegvdlivvaG 63
                ++a+ a++  v ++v++G
  KIR65449.1 11 AMAAGAAALTVAAVVACG 28
                456666666778888887 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 2e-05
                 TTHHHHHHHHHHH.CC-SEEEEEESHHHHHHHHH CS
    DAGK_cat  41 pgdakelakeake.egvdlivvaGGDGtvsevln 73 
                 ++++k  + +++e ++ d++ + GGDGt +e   
  KIR65449.1 136 AEQGKGAFFRLRElDRGDTVTATGGDGTTREYRV 169
                 44444443333331456***********998644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1681.58
//
Query:       KIR65450.1  [L=391]
Description: cysteine desulfurase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-64  215.9   0.0    9.3e-64  215.7   0.0    1.1  1  Aminotran_5      Aminotransferase class-V
    7.4e-13   48.4   0.3    1.1e-12   47.8   0.3    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
     0.0033   16.9   0.8      0.043   13.3   0.5    2.1  2  BtpA             BtpA family
  ------ inclusion threshold ------
      0.062   12.6   0.4      0.089   12.1   0.4    1.3  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
       0.88    9.7   4.1       0.63   10.2   1.7    2.1  2  Lsr2             Lsr2


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.7   0.0   2.6e-67   9.3e-64       2     371 .]       3     370 ..       2     370 .. 0.95

  Alignments for each domain:
  == domain 1  score: 215.7 bits;  conditional E-value: 2.6e-67
                  EEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC....-TTTSEEEEET CS
  Aminotran_5   2 yldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslars....lkpgdeivvte 95 
                  yld aAtt+  +e+l+a+     +  +n+ +s+h +g +a + vee re+va+ ++a+  +e+ift G+te+ nl+++++  +      +++++v ++
   KIR65450.1   3 YLDHAATTPMLDEALEAYVAA-AREVGNA-SSLHAAGRRARRRVEESRERVAAALGARP-SEVIFTGGGTESDNLAVKGIFWArraaSPARRRVVSSA 97 
                  9*******************9.7799999.9***************************7.******************997776677788999***** PP

                  TSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH-...-TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHH CS
  Aminotran_5  96 aehhanlvpwqelakrtgakvkvipldeegeldldelekll...nektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkkl 190
                  +ehha l +   la+r+ga+v ++p+d+ g+ld+++l++ l    + +++v+ ++++n+ Gt+qpv++++++a ++g+ +++Da qavg+ p+d+++ 
   KIR65450.1  98 VEHHAVLDTVDWLAEREGAEVGWLPVDAAGRLDPEALRAELadhGDAVAMVTAMWANNEVGTLQPVAALAAVAAEHGVPFHTDAIQAVGQVPVDFAAS 195
                  *****************************************444477899999********************************************* PP

                  TESEEEEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH CS
  Aminotran_5 191 gvDflafsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyll 288
                  gv  l+++ghKl gP+G+G+l   +   +++ pll gg+       +e+         ++GT  +agi++++ a+e     g ++ +++ ++l++ l+
   KIR65450.1 196 GVSALTVTGHKLGGPAGVGALLLAR--DVAATPLLHGGG-------QERD-------VRSGTLDTAGIVAFAVAVEAA-VKGQQEYAARVAALRDDLV 276
                  ***********************99..778899******.......7777.......89*****************99.6677779999999999999 PP

                  HHHCT.STTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTT....HHHHHHTT.S.......-EEEEE--TTS-HHHHHHH CS
  Aminotran_5 289 erlks.lpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhca....qplmkrlale.......gtvRaSlyiynteeevdrl 371
                   r++  +p+v ++g d+++r ++   f+f+g++ + +  lLd +gIa ++G++c+    qp+++++a+        +++R+ l++ + +++vd+l
   KIR65450.1 277 RRVRHaVPEVVFNG-DPDDRLPGNAHFSFPGCEGDALLLLLDAQGIACSTGSACSagvaQPSHVLIAMGadddrarSSLRFTLGHTSGQADVDAL 370
                  99986599999999.9**************************************99999**********************************97 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.3   3.2e-16   1.1e-12      33     276 ..      43     282 ..       9     294 .. 0.78

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 3.2e-16
                      HHHHHHHHHHHHTT-S..EEEEES-HHHHHHHHH......HHH--TTEEEEEETT.......-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-H CS
  Beta_elim_lyase  33 tvnrLedavaelfgke..aalfvpqGtaAnsill......killqrgeevivtep.......ahihfdetgaiaelagvklrdlknkeaGkmdl 111
                       v++  ++va+++g+    ++f+  Gt ++++++      +       +  ++++        h   d+   +ae +g+++  l+ ++aG +d+
       KIR65450.1  43 RVEESRERVAAALGARpsEVIFTGGGTESDNLAVkgifwaR-----RAASPARRRvvssaveHHAVLDTVDWLAEREGAEVGWLPVDAAGRLDP 131
                      455556788888888655889*************6444442.....44444444445555779******************************* PP

                      HHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSS.TT--SS CS
  Beta_elim_lyase 112 ekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkK.dllanv 204
                      e+l+a +++   h + +++++   +nn    +v +l+ ++++aa+a ++g+p+h D+     a+   +++v   +s+v  +t+ + K ++ a v
       KIR65450.1 132 EALRAELAD---HGDAVAMVTAMWANN----EVGTLQPVAALAAVAAEHGVPFHTDAI---QAV--GQVPVDFAASGVSALTVTGHKlGGPAGV 213
                      *********...777************....588899999999*************84...444..55666677799****9999885788*** PP

                      -EEEEE-HH....HHHHHHHHHHHHT---SSTHHHHH..HHHHHHHHS.STTHHHHHHHHHHHHHHHHHCT-- CS
  Beta_elim_lyase 205 Ggvlafrddeledylaerveqrkylggglrqagvlaaleagiraleeg.laslerdhktaeqlaeklelvrla 276
                      G++l+ rd  +   l    + r    g l+ ag++a      +a+e     + e++ + a+ + + ++ vr a
       KIR65450.1 214 GALLLARDVAATPLLHGGGQERDVRSGTLDTAGIVAF----AVAVEAAvKGQQEYAARVAALRDDLVRRVRHA 282
                      *********99****999999************9999....22333321234444445555555555555555 PP

>> BtpA  BtpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.04   1.4e+02     151     215 ..       8      75 ..       1      83 [. 0.77
   2 !   13.3   0.5   1.2e-05     0.043     141     221 ..     163     245 ..     143     269 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.04
        BtpA 151 havplverdlesavkdtvergladavilsGkatGgevdl..eelklaketvk.vkvlvgsGvseenle 215
                 +++p+ ++ le +v  + e g a ++  +G+++  +v+   e++ +a  + +  +++ g G++ +nl+
  KIR65450.1   8 ATTPMLDEALEAYVAAAREVGNASSLHAAGRRARRRVEEsrERVAAALGARPsEVIFTGGGTESDNLA 75 
                 567889999999**999999*************9998751144444444444677889999**99986 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.2e-05
        BtpA 141 vkiladvavkhavplverdlesavkdtver..gladavilsGkatGgevdleelklaketvkvkvlvgsGvseenlekllsia 221
                 v+ la va +h vp+ +  ++ + +  v    + + a+ ++G++ Gg++ +  l la++++ ++ l g G + +  +  l++a
  KIR65450.1 163 VAALAAVAAEHGVPFHTDAIQAVGQVPVDFaaSGVSALTVTGHKLGGPAGVGALLLARDVAATPLLHGGGQERDVRSGTLDTA 245
                 889**************8888777777765447899********************************998877666555555 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   2.5e-05     0.089      84     150 ..     115     186 ..      42     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.5e-05
                      T-EEEEE-B-TTTSSB-GGGCGGG--TTEEEEEEB-G......GGB---HHHHHHHHHHCT-EEEEE-TT-TT CS
  DegT_DnrJ_EryC1  84 gakpvfvDvdpdtynidpaaieaaitertkaIlpVhl......yGqvadmdalkaiaakhglkvieDaAhAlG 150
                      ga++  + vd +   +dp+a++a +     a+ +V +      +G    ++al a+aa+hg+++  Da +A+G
       KIR65450.1 115 GAEVGWLPVD-AAGRLDPEALRAELADHGDAVAMVTAmwanneVGTLQPVAALAAVAAEHGVPFHTDAIQAVG 186
                      5555555555.567899999999999999888777552222226999999**********************9 PP

>> Lsr2  Lsr2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.7   0.00018      0.63      42      79 ..      12      51 ..       5     132 .. 0.82
   2 ?   -1.8   0.0      0.92   3.3e+03      38      58 ..     365     385 ..     345     389 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00018
        Lsr2 42 klrdaLapyieaarrvggrkk..krrarrkaaaaasreqa 79
                 l +aL+ y++aar+vg++++  ++++r++++ ++sre+ 
  KIR65450.1 12 MLDEALEAYVAAAREVGNASSlhAAGRRARRRVEESRERV 51
                5899*************98887644444444444444444 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.92
        Lsr2  38 enaeklrdaLapyieaarrvg 58 
                 +++++l +aL   +e arr+ 
  KIR65450.1 365 ADVDALVAALPAAVERARRAA 385
                 567888889999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2697.72
//
Query:       KIR65451.1  [L=357]
Description: thiouridylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-110  369.5   0.0   1.6e-110  369.3   0.0    1.0  1  tRNA_Me_trans  tRNA methyl transferase
     0.0027   17.3   0.0     0.0046   16.6   0.0    1.3  1  ThiI           Thiamine biosynthesis protein (ThiI)
  ------ inclusion threshold ------
      0.015   15.8   0.4      0.055   14.0   0.4    2.0  1  Usp            Universal stress protein family
      0.054   13.0   0.0       0.12   11.9   0.0    1.6  1  QueC           Queuosine biosynthesis protein QueC
      0.076   12.1   0.0       0.14   11.3   0.0    1.5  1  NAD_synthase   NAD synthase
      0.077   12.6   0.0        0.1   12.2   0.0    1.2  1  Asn_synthase   Asparagine synthase


Domain annotation for each model (and alignments):
>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  369.3   0.0  5.2e-114  1.6e-110       1     356 []       1     355 [.       1     355 [. 0.97

  Alignments for each domain:
  == domain 1  score: 369.3 bits;  conditional E-value: 5.2e-114
  tRNA_Me_trans   1 kkvvvalSgGVDSsvaaallkeqgyevigvflklweeedeeg...keccaeedlkdaervaeklgiplevvdfekeykekvfeefleeyeeGrTPn 93 
                    ++v++a+SgGVDS+vaaa+  e+g++v+gv+l+l  + ++ +   ++cc+ ed +da+r+a++lgip++v+d++++++ +v+++f+ ey++GrTPn
     KIR65451.1   1 MRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLALARNPQTYRtgaRGCCTLEDSRDARRAADVLGIPFYVWDMADRFHADVVDDFVAEYAAGRTPN 96 
                    69***********************************777766789************************************************** PP

  tRNA_Me_trans  94 PdvlCNkeiKfgallekakeelgadalatGHYarvsleeeknevellrakdkkkDQsyfLsqlskealekllfPlgeltKeevrkiAkeaglavae 189
                    P+++CN++iKf+a+l++a++ lg+da++tGH ar+  +       l+r++d +kDQsy+L+ l++++l++ +fPlg+ tK +vr+ A+++glava+
     KIR65451.1  97 PCLRCNEKIKFAAVLDRAVA-LGFDAVVTGHHARLGPD-----GLLRRSVDAAKDQSYVLAVLTRAQLDRSVFPLGDSTKAQVREEAARRGLAVAD 186
                    *******************9.**************988.....69*************************************************** PP

  tRNA_Me_trans 190 kkdSqgiCfigkrkfkdflkkyleekeGkiieietgevlGeheGllsyTiGqrkGlkiag...aeeplyVvekdakkntvlvgkgedeealaskkl 282
                    k+dS++iCfi++  ++ fl+ +l+e++G+++++ tg+v+G+h+G++ yT+Gqr+Gl++ +    ++p+yV+++ +k+ntv+vg    +eal+++++
     KIR65451.1 187 KPDSHDICFIADGDTRGFLAGRLGETPGQVVDALTGAVVGSHTGAYAYTVGQRRGLHLDRpapDGRPRYVLSITPKTNTVTVGP---AEALEVSTV 279
                    ***********************************************************99999********************...********* PP

  tRNA_Me_trans 283 rvkelnwlaeelkekealelevkvrhkqelvkakvelkedetvevkldekvravtpGQaavlYkgd....evLGggii 356
                    r++++ w+  e + +  +e+ev++r +   v+a+vel+ d t++ +l+++vr+v+ GQa+v Y+ d    +vLG+++i
     KIR65451.1 280 RAERPVWTGGERPAG-PIECEVQLRAHGDVVPATVELTGD-TLRAELRRPVRGVAAGQAVVAYRPDpagdVVLGSATI 355
                    *********888887.8**********************9.**********************86666669*****98 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.5e-06    0.0046       5      36 ..       2      33 ..       1      46 [. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.5e-06
        ThiI  5 kvlaLlSgGiDSpVaaylllkRGcrvvlvhlk 36
                +vla +SgG+DS Vaa ++++ G  v  vhl 
  KIR65451.1  2 RVLAAMSGGVDSAVAAARAVEAGHDVTGVHLA 33
                699**************************995 PP

>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4   1.8e-05     0.055       4     125 ..       2     140 ..       1     143 [. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                 EEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH.....................HHHHHHCTTCE CS
         Usp   4 rIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleada.....................akaaaeaggvk 81 
                 r+l a+ g  +s  A+ +A+e  ++    ++ +h   +r++++  ++++   + e    +++++                         ++ a+++ ++
  KIR65451.1   2 RVLAAMSGGVDSAVAAARAVEAGHD----VTGVHLALARNPQTYRTGARGCCTLEDSRDARRAADVLgipfyvwdmadrfhadvvddfVAEYAAGRTPN 96 
                 89999999************98888....8888888888888888888888888877777766655588999*************************** PP

                 EEEEEEESSHHHHHHHHHHHTTSSEEEEESCCSSTTTTCSSBHH CS
         Usp  82 vevvveegdpaeeilevaeeedadliVvGsrgrsglsrlllGSv 125
                   +   e+ +  + l+ a +++ d +V+G++ r g ++ll  Sv
  KIR65451.1  97 PCLRCNEKIKFAAVLDRAVALGFDAVVTGHHARLGPDGLLRRSV 140
                 ****************************************9999 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.9e-05      0.12       2      33 ..       3      34 ..       2      50 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.9e-05
                EEEE--SSHHHHHHHHHHHHH-SEEEEEEEES CS
        QueC  2 avvllSGGlDSttvlalakkegkevealtfdY 33
                ++  +SGG+DS++++a a ++g+ v+ +++  
  KIR65451.1  3 VLAAMSGGVDSAVAAARAVEAGHDVTGVHLAL 34
                57789********************9999865 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.6e-05      0.14      21      52 ..       3      32 ..       1     127 [. 0.65

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.6e-05
                  EEEEE-SSHHHHHHHHHHHHHHTCGEEEEEE- CS
  NAD_synthase 21 vvlGlSGGvDSslvaalavkalgkenvlalll 52
                  v+  +SGGvDS+++aa av+a   + v+++ l
    KIR65451.1  3 VLAAMSGGVDSAVAAARAVEAG--HDVTGVHL 32
                  56679**************997..34444444 PP

>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.4e-05       0.1      20      76 ..       3      70 ..       1     106 [. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.4e-05
  Asn_synthase 20 vGalLSGGlDSSliaalaarqsk..........splktFsigfee.kgsdeakyakevaehlgtehte 76
                  v a +SGG+DS++ aa a +  +          ++ +t+  g     + ++++ a+++a+ lg++ + 
    KIR65451.1  3 VLAAMSGGVDSAVAAARAVEAGHdvtgvhlalaRNPQTYRTGARGcCTLEDSRDARRAADVLGIPFYV 70
                  66789***************999899999999966677777774369999**********99998444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.60
# Mc/sec: 1805.81
//
Query:       KIR65452.1  [L=334]
Description: methionine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-13   50.6   0.0    6.9e-13   48.6   0.0    1.7  1  Meth_synt_2  Cobalamin-independent synthase, Catalytic domain


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   3.9e-17   6.9e-13       3     322 ..      13     328 ..      11     330 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 3.9e-17
                  BB--SB---SS-----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-SSTTHHHHTTSTTEE--SS--EEEETTEEE---EE-SS CS
  Meth_synt_2   3 TttiGSfPqtaevrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRgdmveyfgealdgfaftkngwvqsygsrcvrppiivgd 100
                   t iGS P+t   ++ r ++++     +  e ++r+ ++++++r ++l v   v+  + R       g  l +   + + +++ + ++          
   KIR65452.1  13 ATGIGSLPGTDIAEAQRIVLGELPALPHLPELPARGPGADLIGRTGGLLVELPVELYAARWRVAPRPGRDLRRARDLMERDLDQLAEQA--------- 101
                  467*****************9999999******************************98865545555677777888888898888887......... PP

                  ---SS-SSTHHHHHHTTS-SS-BEEEEE-HHHHHHTSEE-TTS-HHHHHHHHHHHHHHHHH.HHHHTT-SEEEEE-T...TSSTT--SSG..GGHHHH CS
  Meth_synt_2 101 vsrpaamtvkesalaqsltdkpvkglltGpvtilnwsfvrddvdraeaaaqialalrdevk.dLeaaGikviQiDep...alreGlplkk..adwaay 192
                     + a  vk++a ++ ++ ++  +l  G + + ++++vr   d+  ++a++  a+ ++v+ +L  a  +++Q+Dep    ++ G++  +       +
   KIR65452.1 102 --EEYAGPVKVQAAGPYTLAAG-IDLPIGGRMLRDPGAVR---DLTGSLAEGLRAHLAAVArRLPRA-SVLLQLDEPslpTVLAGRVPTEsgFGTYRP 192
                  ..344456899999******99.79999999*********...99****************99****.889******555344444444425556677 PP

                  HHHHHHHHHHHHTTS-TTSEEEEEES-S--CCCHHHHHTT--SEEEESBSSS-SSGGGGTTT.T---SEEEEBSS-TTSS...S--THHHHHHHHHCH CS
  Meth_synt_2 193 ldwaveafrldtiaaaddtqvhtHlCyselndilsaiaaldvDvitieasrsdeellealee.vkygrgvglGvydihsp...rvpsmeeiaalikka 286
                  +    +a +l t++ a+ + v +H C ++++     i    +  + ++ +  +   l+ l e ++ g g+  G  + + p   r+p++ ++a++++k 
   KIR65452.1 193 VPQPDAADLLRTVVEAVGVPVVVHCCAPDVPLE--LIRSAGAAGVALDLALVK--DLDPLGEaIDAGLGLLAGAAPATPPpggRAPTSAQVADRVRKL 286
                  88899999*********************9966..8999999999*****999..9*****98888888889******99999*************** PP

                  HCT......S-STSB-BB-SS-STTS-HHHHHHHHHHHHHHH CS
  Meth_synt_2 287 ldv......apkerlwvnPdCGLktrkreearaalknmvdaA 322
                   d+       + e++ v P+CGL+ ++ + +ra l   +da 
   KIR65452.1 287 WDRlgfprrRLPEQVVVTPACGLAGATPQHVRAVLAACRDAG 328
                  *****9988778999********************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.49
# Mc/sec: 2047.29
//
Query:       KIR65453.1  [L=125]
Description: glyoxalase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-27   95.7   0.8    2.9e-27   95.5   0.8    1.0  1  Glyoxalase_6  Glyoxalase-like domain
  ------ inclusion threshold ------
      0.025   14.8   0.0      0.034   14.3   0.0    1.3  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge


Domain annotation for each model (and alignments):
>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.8   3.3e-31   2.9e-27       2     107 .]      11     123 ..      10     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 3.3e-31
  Glyoxalase_6   2 vvldaadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpe.........paknrvHldlavedldaevarlvalGArvlreprd 89 
                    v+d++dp+alaaF+a++lg++v++ ++  +++ + g   +++++l+fqr+p+         +  +++Hld++v+d++a+ ++++alGAr+l+ + +
    KIR65453.1  11 TVVDCPDPRALAAFYAELLGLPVAEGDSDGDEWVVLGGPVGQHPRLAFQRAPDlrpptwpdpERPQQLHLDITVTDVEAAERAVLALGARRLDGEGE 107
                   69*************************55555555555566777***************99744457*************************88877 PP

  Glyoxalase_6  90 gthgrvlaDPeGneFcvv 107
                   g   rv+aDP+G++Fc++
    KIR65453.1 108 GF--RVYADPAGHPFCLC 123
                   75..6***********97 PP

>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.8e-06     0.034       9      97 ..      15      97 ..       7     122 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.8e-06
                ESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSC.TSEEEEEEEEEHCHHHHHHHHHHHT CS
  Glyoxalase  9 vgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkiee.tvhhvafialdvedvgkaldrlkea 97
                ++d+ + ++FY++ LG+ + + +     ++  +   +   g+h  l+  +ap+ +++ +  +e  +  h+  +++dve  ++a+    + 
  KIR65453.1 15 CPDPRALAAFYAELLGLPVAEGDS----DGDEWVVLGGPVGQHPRLAFQRAPDLRPPTWPDPERpQQLHLDITVTDVEAAERAVL---AL 97
                789******************999....555555566667777777777888888888844442345555555555555555443...33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 936.99
//
Query:       KIR65454.1  [L=337]
Description: crystallin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-57  195.7  11.4    1.6e-57  195.5  11.4    1.1  1  ADP_ribosyl_GH  ADP-ribosylglycohydrolase


Domain annotation for each model (and alignments):
>> ADP_ribosyl_GH  ADP-ribosylglycohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.5  11.4   9.1e-62   1.6e-57       1     290 [.      15     317 ..      15     318 .. 0.88

  Alignments for each domain:
  == domain 1  score: 195.5 bits;  conditional E-value: 9.1e-62
                     HHHHHHHHHHHHHGGGTT--HHHHHHHTSS--S-----STTTTTS-TT---HHHHHHHHHHHTEET.TEE-HHH....HHHHHHH.HHT....T- CS
  ADP_ribosyl_GH   1 GallGaavGDAlGlpvefwsydeirrrygelgetpdktgfghfglkpgewtddtqmalllleslleaggldped....larrflaeWleepgdte 91 
                     G+llG+a GDAlG p+ef++ +ei+rryg+ g           + +p  +tddtqmal+++ +l +a  l+p++    l +rfla W  +p  ++
      KIR65454.1  15 GSLLGLAYGDALGRPTEFLTVAEIHRRYGPSG-------PRELEGDPALVTDDTQMALAVAWALHDAPALTPAAveplLRERFLA-WAVSP--DN 99 
                     89***************************999.......99999***********************777776655558888888.99977..9* PP

                     -SS--HHHHHHHHHTTTT-...-S-B...---BTTTGGG-HHHHHHTSS-HHHHHHHHHHHHHTTB--HHHHHHHHHHHHHHHHHHTT--STHHH CS
  ADP_ribosyl_GH  92 prgignttrealrnlksgepppeaganangsagngalmRaaplgllyagdpeeaaelaeeaarlTHnhpeavagaaayaaliaaalrgksleeal 186
                     +r++g t+ +a+++l +g +++ea     gs+g+ga mR+ p+gll+  d++++a la+ +a lTH+hp+++a++ ++a++++ +  g+ l e  
      KIR65454.1 100 NRAPGMTCLRACAELSRGVRWQEATVA--GSKGCGANMRVTPVGLLAV-DLDTLAGLAQLQAGLTHGHPTGLAASELTAYAVRLLRDGAALAELP 191
                     ***********************9988..9*****************9.*****************************************99999 PP

                     HHH.....................HHHHTTT-HHHHHHHGGGGG---HHH..................................HHHHH--SSBH CS
  ADP_ribosyl_GH 187 daa...................eeelavapaeeelaaalrkalaladsdkd..........................vdvdaeeavdelgsggya 236
                     + +                   +++                                                    + +d +++++++g g+ a
      KIR65454.1 192 ALLtdrareqrrvyrsdwlgdlWQRPG-----------------------VdspqefiargwdeclgalgrltttltRPDDGDDPCRRTGEGWVA 263
                     999555555555555555555533344.......................234455555555555555555566999999*************** PP

                     HHHHHHHHHHHHH.-SSHHHHHHHHHTS-SSHHHHHHHHHHHHHHHH-GGGS-H CS
  ADP_ribosyl_GH 237 vealaaalyallhaaddfeeallaavnlGgDtdttgaiaGallGalyGleaiPe 290
                     +eala+al ++l +add+  al + +   gD+d+++a+aGa +Ga +Gl a+P 
      KIR65454.1 264 EEALATALLCALWHADDPVGALARGATTAGDSDSIAALAGAFVGAAHGLPAWPT 317
                     ****************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2541.20
//
Query:       KIR65455.1  [L=799]
Description: diguanylate cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-70  235.5   0.0      1e-69  234.7   0.0    1.3  1  EAL       EAL domain
    7.5e-44  149.3   0.0    1.2e-43  148.7   0.0    1.3  1  GGDEF     Diguanylate cyclase, GGDEF domain
  ------ inclusion threshold ------
      0.014   15.4   0.1      0.027   14.5   0.1    1.4  1  Band_7    SPFH domain / Band 7 family


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.7   0.0   1.7e-73     1e-69      10     238 .]     542     768 ..     538     768 .. 0.97

  Alignments for each domain:
  == domain 1  score: 234.7 bits;  conditional E-value: 1.7e-73
                 TT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEE..EEE--CHHCC-CCHHHHH CS
         EAL  10 nkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadikl..sinlspasladeefleel 106
                 ++++ +yyQP+v ++tg+vvg+eallrw+hp++g++ pee++++ae++ +++ l+r v++ ++++l++++    a+i l  ++n+s ++l+  e+++++
  KIR65455.1 542 AGRITMYYQPQVAIATGEVVGVEALLRWRHPRRGMVDPEELIRVAEQSAVMRLLTRRVVDDVVEQLAKWS---AAGITLraALNVSVRDLHTGEIADQI 637
                 57999****************************************************************8...66666666****************** PP

                 HHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHHHCCCT CS
         EAL 107 rellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalialakelg 205
                 +++l+++g++p+rL leite +l+a+ + +  + + rL+a G+ ialddfgtgyss+++l+rlp+  +K+drs++ ++ +d++++a+v+++i+la +l+
  KIR65455.1 638 ADRLARYGVRPDRLQLEITEGALMADPRRVL-ATISRLHAIGVAIALDDFGTGYSSMQHLRRLPLSEVKVDRSFVLGMADDADDAAIVRSMIELAGALN 735
                 ******************************9.******************************************************************* PP

                 -EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 206 ikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 ++vvaegVe+e+++++l ++gcd +QG+++++p
  KIR65455.1 736 LRVVAEGVEDERTWRLLHAAGCDVAQGWFYARP 768
                 *******************************99 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.7   0.0   1.9e-47   1.2e-43       3     158 ..     246     404 ..     244     406 .. 0.93

  Alignments for each domain:
  == domain 1  score: 148.7 bits;  conditional E-value: 1.9e-47
                 B-CCCGSEEHHHHHHHHHHHHHCC.HH.....CTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHH CS
       GGDEF   3 hDslTgLpNRrlleeeleqelqra.rr.....eqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetssee 95 
                 +D+lTgLpNR++l  e++++++ + +r      + +la+ll+dld+Fk++nd++Gh+vGD++L+ev+ rL+ ++ ++dl+aRlggdeFai+ +     +
  KIR65455.1 246 LDPLTGLPNRKALLAEVAEQVHLHaERsarnePDAQLALLLIDLDRFKNVNDALGHAVGDRLLIEVSARLAGAVGERDLLARLGGDEFAIVSTGLA--G 342
                 7**************999998876555555556789*******************************************************99999..7 PP

                 HHHHHHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCT CS
       GGDEF  96 aaelaerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkag 158
                  +++   ++rl+a+l+epv+l+g +l+v  siGia++ pe+ged+++l+++Ad a+y aK+++
  KIR65455.1 343 VDAARATAERLVAALAEPVSLDGLPLDVGGSIGIAMY-PEHGEDFATLMRHADVAMYDAKHRN 404
                 8************************************.6*********************975 PP

>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   4.4e-06     0.027      55     138 ..     555     647 ..     542     659 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.4e-06
      Band_7  55 tkDglpvtidvtviyrv....pddapklvaaveresanldnlirrvlesalrevi.....semtleellsn..reelaeelknelneqlrkyGve 138
                  + g +v++++ +++r       d+ +l++    e+  + +l++r +++++ e++     +  tl   l+   r+  + e++++++++l++yGv 
  KIR65455.1 555 IATGEVVGVEALLRWRHprrgMVDPEELIRVA--EQSAVMRLLTRRVVDDVVEQLakwsaAGITLRAALNVsvRDLHTGEIADQIADRLARYGVR 647
                 55677899*******98899999*********..9999999999999999999996777777777777766889999****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5369.09
//
Query:       KIR65456.1  [L=491]
Description: glutamyl-tRNA amidotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.6e-155  516.5   0.2   8.1e-155  516.2   0.2    1.0  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  516.2   0.2  4.5e-159  8.1e-155       1     449 [.      25     471 ..      25     472 .. 0.98

  Alignments for each domain:
  == domain 1  score: 516.2 bits;  conditional E-value: 4.5e-159
                 HHHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE CS
     Amidase   1 elveaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkT 99 
                 e+++a l+ri+av+ ++na+++v+ + ala+A+++d++ra+g+e gpL+GvP++vKD +++kgvptt Gsk+l ++++++Dat+v+rL++aG v+lgkT
  KIR65456.1  25 EVTQAHLDRIAAVDGRVNAFLHVDADGALAAARAVDERRAAGEELGPLAGVPVAVKDVLTTKGVPTTVGSKILQGWRPPYDATIVQRLRAAGTVMLGKT 123
                 79************************************************************************************************* PP

                 --SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSHH CS
     Amidase 100 nmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsve 198
                 nmdefamgsste+s++gptrNPwd++r+pGGS GGsAAa+Aa  +plaiG+DtGGSiR+P +++g+vG KPtyg  Sr+g+va++ssld+ Gp+ar+v 
  KIR65456.1 124 NMDEFAMGSSTEYSAYGPTRNPWDTDRIPGGSGGGSAAALAAYEAPLAIGSDTGGSIRQPGAVTGTVGAKPTYGGTSRYGLVAFSSSLDTPGPCARTVL 222
                 *************************************************************************************************** PP

                 HHHHHHHHHBS--TT-TTS----..HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHHHHHHH CS
     Amidase 199 dlalllrvilgedpkdstssvip..eesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleealslyylilvae 295
                 d+all  +i g+dp+dsts + p  + + + + ++  +l g++ Gvv+e++ + ++p v++a+++ ++aL ++G+e+vev++p++++al++yyli+++e
  KIR65456.1 223 DAALLHAAIGGHDPRDSTSIPQPvpDVVAAARLGATGDLTGVKLGVVTEFSGEGAEPGVAAAFRDSVDALAKLGAEIVEVSCPHFKYALPAYYLIAPSE 321
                 *******************998877777788888999************************************************************** PP

                 HHHHTTT-SSSSS...---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSSS--BCCC CS
     Amidase 296 assnlarylgvry...erlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafeelDvllsPtaptpaprlge 391
                  ssnlar++gvr+   e +++ ++l+e+++ +r++++g+evkrri+lg+yals++++++yy +aqkvr+l++r+f++afe++D+l+sPt+p  a+++g+
  KIR65456.1 322 CSSNLARFDGVRFglrEGDDGNRSLEEVMSLTRDAGFGPEVKRRIMLGTYALSSGYYDAYYGQAQKVRTLITRDFTAAFERVDALISPTTPFVAFPIGA 420
                 ***************999********************************************************************************* PP

                 CCHHHCSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHH CS
     Amidase 392 kdktidsytvlynlldftavvvpvnlaglpalsvpagksedglPvGvqvigkafqeet 449
                 ++    ++  +y+ + +t   +p nl g p +svp+g s+ glPvG+qv+++++++ +
  KIR65456.1 421 RT---SDPYQMYLADLYT---IPTNLYGGPGISVPCGLSD-GLPVGLQVMAPTMADDR 471
                 *8...69***********...*****************96.************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3583.91
//
Query:       KIR65457.1  [L=498]
Description: glutamyl-tRNA amidotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.9e-103  344.6   0.0   5.4e-103  344.1   0.0    1.2  1  GatB_N     GatB/GatE catalytic domain
    4.9e-41  140.1   0.0    6.7e-41  139.6   0.0    1.2  1  GatB_Yqey  GatB domain
  ------ inclusion threshold ------
       0.16   12.0   0.2       0.46   10.6   0.2    1.8  1  YqeY       Yqey-like protein


Domain annotation for each model (and alignments):
>> GatB_N  GatB/GatE catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.1   0.0    9e-107  5.4e-103       2     272 ..      19     310 ..      18     311 .. 0.95

  Alignments for each domain:
  == domain 1  score: 344.1 bits;  conditional E-value: 9e-107
                 EEEEEEEEEB--SB-SSSSSBSSSSCESTTSS--TTTTTSTT..--EEHHHHHHHHHHHHHTTEEE-SEE-EEEEE-TCTTCTTSEEEEESSS.SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N   2 viGlEiHaqlktksKlFssasteeegeepnsevsevdlalPGtlPvlnkeavelaikaalalnceiaeeskfdRKnyfypdlpkgyQitqkeeplakeG 100
                 viGlE H++l t++K+F++++ +++g epn++v++v+l+lPG+lPv nk+a+e +i+++lalnc+ia+ ++f+RKnyfypd+pk++Qi+q++epl+ +G
  KIR65457.1  19 VIGLETHVELGTNTKMFCGCP-TDFGGEPNTRVCPVCLGLPGSLPVANKAAIEATIRIGLALNCSIASWCRFARKNYFYPDMPKNFQISQYDEPLCVDG 116
                 8********************.56*************************************************************************** PP

                 EEEE.....TEEEEEEEEEEEE---EEEE........EETTEEEEETTSTT-EEEEEEE-S....TB-SHHHHHHHHHHHHHHHHHHTSB--SGGGTTE CS
                 xxxx.....xxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N 101 slel.....ekkvrierihlEeDaaksvh........eekeeslvdlnRaGvpLiEivtep....dlrspeearavveklrellralgvsdgnmeeGsl 182
                 +l++       +++ier+hlEeD++k++h        + ++eslvd+nRaG+pL+Eivt+p        pe ara+v++lr+++r+lgvsd +meeGsl
  KIR65457.1 117 YLDVevggeLVRIGIERVHLEEDTGKTLHvggatgriHGATESLVDYNRAGIPLVEIVTKPvpgtGALAPEVARAYVTELRDVIRSLGVSDVRMEEGSL 215
                 ***9888777788*********************99866679*******************555446789***************************** PP

                 EEEEEEEECTSETTSSS.--EEEEEE-SHHHHHHHHHHHHHHHHHHH.......-EEEEEETTTTEEEEECC----...-EEE-TTS--EE--HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N 183 RcDvNvSvreeekgeeegtrvEiKnlnslksiekaieyeierqiell.......qeTrkfdedkgetvslRskeeaedYryfpepdlppleiseeli 272
                 RcDvN S++    g+e gtr+E Kn+nsl+s+e+a++ e+ rq+++l       qeTr+f+ed+g t+  Rske+a+dYryfpepdl+pl+ + +++
  KIR65457.1 216 RCDVNTSLN--LPGQEWGTRTETKNVNSLRSVERAVRSEMLRQASVLdaggritQETRHFHEDTGDTTPGRSKETATDYRYFPEPDLVPLAPDAAWV 310
                 *********..568888*************************************************************************9988876 PP

>> GatB_Yqey  GatB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.6   0.0   1.1e-44   6.7e-41       2     148 .]     350     496 ..     349     496 .. 0.99

  Alignments for each domain:
  == domain 1  score: 139.6 bits;  conditional E-value: 1.1e-44
                 HHHHHHHHSS.HHHHHHHHHTCHHHHHHHHTXXTTCSSTTHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHHTXXHHHHHHHCTXXXXXXSSXHHHHHHH CS
   GatB_Yqey   2 ffeevvkegadaklaanwllnellgelnkegleieelkltpeqlaellkliaegkIskkiakevleelleegkspeeiieekgLkqisdeeeleklvee 100
                 ++e++v++ga ++ a +w+l+el ++ n+ g+e++++  tp+q+ael  l++ gk+++k a+ vle ++++++sp ei++ +gL+ +sd+++l+++v+e
  KIR65457.1 350 LIEATVAAGATPAAARKWWLGELSRRANETGVELADVGATPAQVAELQGLVDAGKLNDKLARSVLEGVVAGEGSPTEIMTARGLEVVSDTGALTAAVDE 448
                 6899*********************************************************************************************** PP

                 HHHTXHHHHHHHTTXXTTSTHHHHHHHHHTTSSXSXHHHHHHHHHHHS CS
   GatB_Yqey 101 viaenpkavedyksgkekalkflvGqvMkktkGkadpklvnellkekL 148
                 +ia+np+ +e+++sgk  a ++lvG vMk t+G+ad+k+v+el+ ++L
  KIR65457.1 449 AIAANPDIAEKIRSGKVAAAGALVGAVMKTTRGQADAKTVRELILSRL 496
                 ********************************************9987 PP

>> YqeY  Yqey-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   7.6e-05      0.46     103     143 .]     456     496 ..     438     496 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.6e-05
                 HHHHTT--BGGGHHHHHHHHHHHHTTTS-HHHHHHHHHHH- CS
        YqeY 103 aiaevgaesmkdmGkvmkalkpkvkGkaDgkkvsalvkekL 143
                 + +++   ++++ G +++a++++++G+aD k v++l+ ++L
  KIR65457.1 456 IAEKIRSGKVAAAGALVGAVMKTTRGQADAKTVRELILSRL 496
                 3334455588899**********************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 3203.12
//
Query:       KIR65458.1  [L=508]
Description: metallophosphoesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-12   48.7   0.0      2e-12   48.1   0.0    1.3  1  Metallophos    Calcineurin-like phosphoesterase
    1.3e-08   35.2   0.0      4e-08   33.6   0.0    1.7  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
  ------ inclusion threshold ------
      0.015   15.0   0.5      0.015   15.0   0.5    2.3  3  DUF4131        Domain of unknown function (DUF4131)
       0.13   11.9   8.2       0.19   11.3   2.1    2.4  2  DUF998         Protein of unknown function (DUF998)


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   4.5e-16     2e-12       2     202 ..     247     415 ..     246     417 .. 0.75

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 4.5e-16
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS.HHHHHHHHHHHHHHHHTSEEEEEC-TTS.CHHH.HHHHHHHHHHHHHHHHE CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrg.dlekellellaalvkypipvylllGNHe.gfee.ellnkygylgifsepwr 96 
                  r+l+++D+H  l + +++ ++++++++    ++d+v+ +GD++d g ++e +++  +  l k   p++ ++GNH+ g  +      ++ +   + + +
   KIR65458.1 247 RVLHVSDMH--LNPTGWQLIRTVVEQF----GIDVVIDTGDITDWGsEPEASFVGSIGLLKK---PYVYIRGNHDsG--KtAAAVAQQPN---AIVLN 330
                  8********..999*************....**************99888889999999999...**********42..42333333332...56677 PP

                  HHHCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCCHHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHHHHHTTES CS
  Metallophos  97 sdaevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepgdewlkdlekrekadwvivlgHsplyrgsgylfgdealedllkkygvd 194
                  + ++++ +l +a++g+   ++  ++  sp      + l++ + ++ +  + d++   +++++++++ i+l H p +           +      +   
   KIR65458.1 331 NSTTTVAGLTIAGIGDP--RFTPDKETSPAG----SGLTKQVADQVIGAG-DQLAV-TVRESPKPVNIALVHDPAS-----------AG--PLSGTCP 407
                  779999***********..888888875555....444444444444443.33333.4788999999999999999...........22..2233477 PP

                  EEEEESSS CS
  Metallophos 195 lvisGHtH 202
                  lv+ GHtH
   KIR65458.1 408 LVLAGHTH 415
                  78888888 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   8.8e-12     4e-08       2     137 ..     247     424 ..     247     446 .. 0.71

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 8.8e-12
  Metallophos_2   2 klaiiSDlHsnldaleavlealkevgvdaiihaGDl..eeeepe..vleellela.pvlaVrGNnD.............................. 62 
                    +++++SD+H n    + + + +++ g+d +i +GD+   ++epe  ++  +  l+ p +++rGN+D                              
     KIR65458.1 247 RVLHVSDMHLNPTGWQLIRTVVEQFGIDVVIDTGDItdWGSEPEasFVGSIGLLKkPYVYIRGNHDsgktaaavaqqpnaivlnnstttvagltia 342
                    689******8888888888888889**********999777776635555555559**********999999999988888888888888888887 PP

  Metallophos_2  63 ...eev.veedvlreaaelgtdlp.eeaelelagek.vlliHgdplgvkdalaellkeaeegsd...vvvcGHtHvpevekegg 137
                       +   +  d   ++a+ g   + +++++  ag++ +  ++++p+ v+ al ++  +a   s    +v++GHtH ++v+k  +
     KIR65458.1 343 gigD-PrFTPDKETSPAGSGLTKQvADQVIG-AGDQlAVTVRESPKPVNIALVHDPASAGPLSGtcpLVLAGHTHARQVSKLPQ 424
                    7752.23444444444444433342444444.44442566677766777777777777544443458***********999854 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.68     3e+03      30      50 ..      24      44 ..      16      56 .. 0.62
   2 ?   15.0   0.5   3.3e-06     0.015      10      94 ..     139     228 ..     131     251 .. 0.67
   3 ?   -2.9   0.0         1   4.6e+03     105     129 ..     479     503 ..     471     507 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.68
     DUF4131 30 rrvllllllllllallgfalr 50
                 r+l+++l++l++ l+g+++ 
  KIR65458.1 24 VRRLGVVLAVLVISLAGAVIG 44
                455566666666555555544 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 3.3e-06
     DUF4131  10 lalllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsqlles..gqeviveG..vvaslpeltgsgt.rfvlever 94 
                  a++l++l+l++l++r+ +r  ++++l+ll  +++lg+a+++ +p+a + +++  +  + + iv    ++a+   +++++  r+v +v++
  KIR65458.1 139 GAAVLVTLVLAGLVFRDTRRTAWAGGLSLLVTAGSLGLAASTIRPQAIEEPRYEGLlvNAPAIVGDarRIANDYTKYAEQLqRLVGNVSQ 228
                 46777777777888877999999999999999**************99999988655533333221234444444444444455555544 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1
     DUF4131 105 sgrvlvtvpkspaeglrpGdrlrlt 129
                 +g+ +v+++ +  ++ + Gd++ +t
  KIR65458.1 479 TGQAQVNLERHVVQNPKAGDQVPVT 503
                 7888999999999999999998776 PP

>> DUF998  Protein of unknown function (DUF998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.4    0.0088        40      64      93 ..      26      55 ..      11      99 .. 0.62
   2 ?   11.3   2.1   4.2e-05      0.19      45      92 ..     134     185 ..     112     191 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0088
      DUF998 64 argragragrlllavaglglvlagvfptdp 93
                + g + ++ ++ la a++g+++ g ++td+
  KIR65458.1 26 RLGVVLAVLVISLAGAVIGTLAGGRVHTDI 55
                223333333333345555555555555555 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.2e-05
      DUF998  45 glvllgllvla..lavgllra..argragragrlllavaglglvlagvfptd 92 
                 gl ++g++vl+  +++gl+ +  +r++++   +ll++++ lgl+++ + p  
  KIR65458.1 134 GLRTVGAAVLVtlVLAGLVFRdtRRTAWAGGLSLLVTAGSLGLAASTIRPQA 185
                 4444454444433444444444777777777888888999***999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3276.91
//
Query:       KIR65459.1  [L=390]
Description: glucose sorbosone dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-68  229.9   0.2    7.2e-68  229.3   0.2    1.3  1  GSDH      Glucose / Sorbosone dehydrogenase
     0.0024   17.8   0.0       0.16   12.1   0.0    3.5  4  NHL       NHL repeat


Domain annotation for each model (and alignments):
>> GSDH  Glucose / Sorbosone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.3   0.2   8.1e-72   7.2e-68       2     329 ..      72     367 ..      71     379 .. 0.90

  Alignments for each domain:
  == domain 1  score: 229.3 bits;  conditional E-value: 8.1e-72
                 S-EEEEEE-TTS-EEEEET.TTEEEEEE.....TTEE.EEEEE-.----STT-SEEEEEE-TTTTTS-EEEEEEEE-...TTSSEEEEEEEEE-SS..- CS
        GSDH   2 ehPwslaflpdgrlLvter.sGrlrlvk....adgklkepiagvpevvakgqgGlldvalhpdfaenrlvYltyaeaeeekggagtavararlsedeaa 95 
                 + Pw++aflpdg +Lvter sGr+  v     +dg + +++++vp vv  g+gGl+++a++p++a++++++++++       ++++++++  l+++   
  KIR65459.1  72 RVPWGMAFLPDGGALVTERdSGRILQVGpgsgRDGLTVTAVRTVPGVVPGGEGGLMGIAVSPTYATDQTIFVYHTA------ENDNRIVKLDLDGA--- 161
                 68*****************99****9985444466668999999*******************************4......47889******888... PP

                 EEEEEEEEEEE---TT-------EEE-TTS-EEEE---TT-GGGGG-TT-SSSEEEEE-TTSSB-TT-TTTT-TTS-TTEEEE--SCE---EE-TTT-- CS
        GSDH  96 ledlevifrqepkvesgahfGsrlafgpdgtLfvtvGdrskreeaqdlsselGkilrlnkdGsvpadnpfvgkagakpeiwsyGhRnpqGlaldpdtge 194
                     + i++ +pk   g h+G+ lafgpdg L+ ++Gd+++re aqd ++  Gkilr+++ G+++++npf+      + +ws+GhRn+qGla+d+  ++
  KIR65459.1 162 ---PTPILTGIPK--AGIHNGGGLAFGPDGFLYASTGDAGNREAAQDQKNLGGKILRITTAGKPAPGNPFA-----GSPVWSLGHRNVQGLAWDAG-KR 249
                 ...889*******..899****************************************************6.....689***************99.** PP

                 EEEEEE--SSSEEEEEE-TT-B--TTT-S......S-.....-S-TTS---SEEETT-.--EEEEEEE........TTEEEEEETTTTEEEEEEEEEEE CS
        GSDH 195 LwesEhGprggDelnlieaGknYGWplvsygeeYsgkkigesetreglekpvlvwtps.iapsglafytgdafpewkgdllvggLksqsllrleldege 292
                 ++++E+G++  De+n i++G+nYGWp+v+      g+      ++  +++p++ w+++  + sgla    d+       l+++ L+ q+l+ +el +++
  KIR65459.1 250 MYAVEFGQNTWDEINQITKGGNYGWPQVE------GQ-----ADDRRYADPLVQWRTTdASCSGLAAT--DR------LLVTACLRGQRLWLVELTDTG 329
                 ****************************9......33.....677889********997778888765..33......367899***********7777 PP

                 EEEEEEE.EEESS-.-EEEEEE-TTS-EEEEE-TTTTT CS
        GSDH 293 kvveeer.lleelgeriRdVeqgpdGalyvltdeedgk 329
                 +v  + r ll+++  r+R    +pdG+++v+t+++dg+
  KIR65459.1 330 TVLGQPReLLTRRYGRLRGAIAAPDGSVWVTTSNHDGR 367
                 877665516677767********************996 PP

>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   1.8e-05      0.16       1      26 [.      71      96 ..      71      98 .. 0.92
   2 ?   -2.0   0.0      0.51   4.6e+03       6      16 ..     179     189 ..     178     190 .. 0.89
   3 ?   -1.0   0.0      0.24   2.2e+03       4      25 ..     300     320 ..     298     321 .. 0.71
   4 ?    0.6   0.0     0.077   6.9e+02       8      18 ..     351     360 ..     349     364 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.8e-05
                BSSEEEEEEETTTEEEEEECCCTEEE CS
         NHL  1 fnyPhGvavdsnGdiyVaDsenhrvq 26
                ++ P+G a +++G  +V+++ + r+ 
  KIR65459.1 71 LRVPWGMAFLPDGGALVTERDSGRIL 96
                578*******************9996 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.51
                 EEEEETTTEEE CS
         NHL   6 GvavdsnGdiy 16 
                 G+a  ++G +y
  KIR65459.1 179 GLAFGPDGFLY 189
                 99******988 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.24
                 EEEEEEETTTEEEEEECCCTEE CS
         NHL   4 PhGvavdsnGdiyVaDsenhrv 25 
                 ++G+a+ ++  ++ a+ + +r+
  KIR65459.1 300 CSGLAA-TDRLLVTACLRGQRL 320
                 789999.588888887666665 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.077
                 EEETTTEEEEE CS
         NHL   8 avdsnGdiyVa 18 
                 a+ ++G ++V+
  KIR65459.1 351 AA-PDGSVWVT 360
                 34.9******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3066.17
//
Query:       KIR65460.1  [L=308]
Description: phosphoglycerate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-48  161.9   0.0    1.2e-47  161.6   0.0    1.1  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
     0.0048   17.0   0.0      0.014   15.4   0.0    1.7  1  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.014   15.0   0.1      0.026   14.2   0.1    1.4  1  ApbA           Ketopantoate reductase PanE/ApbA
      0.015   15.0   0.0      0.046   13.4   0.0    1.9  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
      0.018   15.5   0.1      0.037   14.5   0.1    1.6  1  NAD_binding_7  Putative NAD(P)-binding
      0.051   13.7   0.0      0.074   13.2   0.0    1.2  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
      0.073   12.3   0.0       0.11   11.7   0.0    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
       0.16   11.3   0.0       0.25   10.6   0.0    1.2  1  ThiF           ThiF family
        0.2   11.2   0.0        0.3   10.6   0.0    1.2  1  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.6   0.0   5.9e-51   1.2e-47       2     178 .]     102     273 ..     101     273 .. 0.96

  Alignments for each domain:
  == domain 1  score: 161.6 bits;  conditional E-value: 5.9e-51
                   HHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE- CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslh 98 
                   a++l+ +r ++++  ++ ++ew  ++  +  el+gk+v i+G+G+IG av  rl++f++  + + r++++ e    +   +++l +ll e+D+v++ 
    KIR65460.1 102 AAILSQVRGFPAFALAQSRREWAYDRLCPTDELAGKRVLIVGAGSIGAAVRARLAPFEVTFTLVARTPRPAE--GVH--GVDELPALLPEADVVVVL 194
                   7899******************999999999************************************99766..333..568*************** PP

                   S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  99 lpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   +plt++tr+l++++ la+m++ga+l+N+aRG++  ++aL++ L  g+++ aalDv+++eplp+d+pl+elpnv+ltPH+a
    KIR65460.1 195 VPLTDATRGLVDEKFLAAMPDGALLVNAARGPVARTDALVAELTTGRLR-AALDVTDPEPLPADHPLWELPNVLLTPHVA 273
                   *************************************************.99**************************98 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.2e-06     0.014       8      80 ..     132     192 ..     127     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.2e-06
                   S..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEE CS
  Shikimate_DH   8 eslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvi 80 
                   ++l++k+vl++GaG ++  v   L+  +v+  + + Rt + a+ +    +g       ++el +ll eadvv+
    KIR65460.1 132 DELAGKRVLIVGAGSIGAAVRARLAPFEVT-FTLVARTPRPAEGV----HG-------VDELPALLPEADVVV 192
                   5799*************************9.99999**9887755....23.......367777777777776 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.3e-05     0.026       1      32 [.     139     171 ..     139     178 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.H CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr.r 32 
                 ++i+GaG+iG  + a+La    + tl++r++  
  KIR65460.1 139 VLIVGAGSIGAAVRARLAPFEVTFTLVARTPrP 171
                 68***************8888899999999855 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.3e-05     0.046      54     133 ..      54     304 ..       6     305 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.3e-05
                 HHHHHHTT--EEEESSSSCTTB-HHHHHH..TT-EEEE-TTTTHHHHHHHH................................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx................................................ RF
  2-Hacid_dh  54 evlealpkLkviaragvGvDnvDldaake..rGilVtnvpgystesvAElt................................................ 102
                 ++l +lp+L+v+++ ++G D     +a +   G++++ + g++   +AE +                                                
  KIR65460.1  54 ALLGRLPDLRVVQLLSAGADA----WAGRvpPGVTLCDARGVHDVGTAEWVvaailsqvrgfpafalaqsrrewaydrlcptdelagkrvlivgagsig 148
                 567999*************95....5555226******************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  KIR65460.1 149 aavrarlapfevtftlvartprpaegvhgvdelpallpeadvvvvlvpltdatrglvdekflaampdgallvnaargpvartdalvaelttgrlraald 247
                 *************************************************************************************************** PP

                 ..........................T-BHHHHHHHHHHHHHHHHHHHTTCCGTTBC CS
                 ..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ..........................aaTeeaqeniaeeaaenlvaflkgespanav 133
                                           ++ +  + ++ + +ae++++f++ge++ nav
  KIR65460.1 248 vtdpeplpadhplwelpnvlltphvaGSVRGLLPRAYRLVAEQVRRFAAGEPLVNAV 304
                 *****************************************************9998 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.9e-05     0.037       5      66 ..     134     192 ..     132     244 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.9e-05
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvklaeeelekdlegadlvi 66 
                    l gk+vl+vG+G+++a    +l++++ + t+va +  + +e+   +  +el++ l +ad+v+
     KIR65460.1 134 LAGKRVLIVGAGSIGAAVRARLAPFEVTFTLVARTP-RPAEG--VHGVDELPALLPEADVVV 192
                    789**************999*************993.22222..233444455555555444 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.7e-05     0.074       4     106 ..     141     239 ..     138     248 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.7e-05
                    EE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HHHHH CS
  NAD_binding_2   4 fiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstsspedtr 98 
                    ++G G +G+    +l+  + + +++ rt+       aeg+++++++ +l+ ++dvv+++v+ ++a++ ++++  l+a+  g++l++ +   ++ t 
     KIR65460.1 141 IVGAGSIGAAVRARLAPFEVTFTLVARTPRP-----AEGVHGVDELPALLPEADVVVVLVPLTDATRGLVDEkFLAAMPDGALLVNAARGPVARTD 231
                    6888888888888888888888888888665.....46788999****************************9999*********99998888888 PP

                    HHHHHHHH CS
  NAD_binding_2  99 elakelke 106
                     l +el+ 
     KIR65460.1 232 ALVAELTT 239
                    88888765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.4e-05      0.11     138     178 ..     132     172 ..     106     181 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.4e-05
                  CSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 138 lkllpkrivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  ++l  kr+++vG+G iG  + a la + +  tlv + +r+ 
   KIR65460.1 132 DELAGKRVLIVGAGSIGAAVRARLAPFEVTFTLVARTPRPA 172
                  344559********************************987 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013      0.25      14      38 ..     132     156 ..     125     164 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
                 HHHHTSEEEEE--SHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  14 ekLrdskvllvGaGglGsellknLa 38 
                 ++L+ ++vl+vGaG +G  +   La
  KIR65460.1 132 DELAGKRVLIVGAGSIGAAVRARLA 156
                 67999************99987777 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00015       0.3       2      92 ..     134     220 ..     133     227 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-.HHHHHHHHHHHTGGG--TT-EEE CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliP.Delqkevyeeeiepnlkegkala 92 
                 l gk++ ++G Gs G a    l    ++v+ +l + +    +  e  + v ++  +  +advv++l+P   + + +++e+    + +g+ l+
  KIR65460.1 134 LAGKRVLIVGAGSIGAAVRARLA--PFEVTFTLVART---PRPAEGVHGVDELPALLPEADVVVVLVPlTDATRGLVDEKFLAAMPDGALLV 220
                 789************98877775..567777777665...344556678999999*************423455666777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2075.43
//
Query:       KIR65461.1  [L=124]
Description: chemotaxis protein CheW [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-09   38.4   8.7      1e-09   38.4   8.7    1.5  2  bPH_6     Bacterial PH domain


Domain annotation for each model (and alignments):
>> bPH_6  Bacterial PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.37   6.5e+03      30      41 ..       6      17 ..       4      24 .. 0.70
   2 !   38.4   8.7   5.6e-14     1e-09       1      71 [.      51     120 ..      51     122 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.37
       bPH_6 30 vrfpegrrlarl 41
                vrf++++ ++++
  KIR65461.1  6 VRFRHNQAILVA 17
                788888776544 PP

  == domain 2  score: 38.4 bits;  conditional E-value: 5.6e-14
       bPH_6   1 RprvrvdpdGvevrnlfrtrrlpWsaiagvrfpegrrlarldlrdgelvplpavqlgddpelvadalrrlr 71 
                 R  +++d+  +++r l ++rr++W+ ++++  + ++r a+++l+dgel++lp+v+   +p+lva+ ++ l+
  KIR65461.1  51 RAGTEADARELRLRALAGQRRVAWDRVVELGADARGR-AVARLDDGELLVLPGVRGSELPRLVAATGQNLP 120
                 56799********************************.***************************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 831.66
//
Query:       KIR65462.1  [L=339]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-33  116.3   0.9    2.9e-33  115.6   0.4    1.6  2  Peripla_BP_3   Periplasmic binding protein-like domain
    1.3e-16   60.1   0.0    2.6e-16   59.1   0.0    1.5  1  LacI           Bacterial regulatory proteins, lacI family
    2.4e-16   60.0   0.0    3.2e-16   59.6   0.0    1.1  1  Peripla_BP_1   Periplasmic binding proteins and sugar binding
      3e-05   23.8   1.2      0.054   13.4   0.0    3.6  3  MarR_2         MarR family
     0.0024   17.6   0.4        3.4    7.5   0.0    3.5  3  HTH_IclR       IclR helix-turn-helix domain
     0.0043   16.8   0.8      0.023   14.5   0.1    2.5  2  TetR_N         Bacterial regulatory proteins, tetR family
     0.0048   16.5   0.0     0.0075   15.9   0.0    1.5  1  Peripla_BP_4   Periplasmic binding protein domain
     0.0077   16.6   2.4      0.028   14.8   0.4    2.7  2  HTH_31         Helix-turn-helix domain
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.031   14.3   0.0    1.7  1  HTH_3          Helix-turn-helix
      0.025   14.1   0.1       0.75    9.4   0.0    2.8  3  HTH_24         Winged helix-turn-helix DNA-binding
      0.029   14.5   0.1        3.9    7.7   0.0    2.8  3  HTH_AraC       Bacterial regulatory helix-turn-helix proteins
      0.034   13.9   0.1        2.9    7.8   0.0    2.6  2  HTH_10         HTH DNA binding domain
       0.26   11.1   2.3         10    6.0   0.0    3.2  3  HTH_AsnC-type  AsnC-type helix-turn-helix domain
       0.34   10.7   1.5         28    4.6   0.2    2.9  3  HTH_38         Helix-turn-helix domain
       0.66    9.8   2.8        4.9    7.1   0.0    3.1  3  HTH_23         Homeodomain-like domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       4.8   5.7e+03      50      82 ..     105     130 ..      82     145 .. 0.57
   2 !  115.6   0.4   2.4e-36   2.9e-33       1     166 []     175     333 ..     175     333 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.8
                   S-SS-SSHHHHH.....HHHHHCC-SEEEEESS CS
  Peripla_BP_3  50 aaddpaaaaaaraalllqalklaalPtAviaas 82 
                   a+ d+++a  +r+++      ++++ ++v++++
    KIR65462.1 105 ADPDAEIA-VYRRWW------AERRVDGVFVCD 130
                   33333322.233332......233557887765 PP

  == domain 2  score: 115.6 bits;  conditional E-value: 2.4e-36
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC..-SEEEEESSCCHHHHHHHHHCC CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaa..lPtAviaasDelAlgvlqalre 95 
                   ve+Lv+lGhrria +g  g   + + + r ++f +++++lgl+  +tv+ + + +++a+a ++ll       +  +PtAvi  +D++A++ l++++e
    KIR65462.1 175 VEYLVALGHRRIARVG--GLPSLLHTEVRSDAFTEVCARLGLDESVTVWSDYTGEEGARATRRLL------SSphRPTAVIYDNDVMAVAGLSVAQE 263
                   79**************..*****************************999999999999999882......22359********************* PP

                   TT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  96 aglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   +gl+vP dls+++ dds+l++l++PplT+   +++  G  aa++ll++++ge+    q +   +l++R+St
    KIR65462.1 264 MGLTVPGDLSIVAWDDSPLCQLVHPPLTALGRDIPAYGAHAARQLLQVIAGEPVSGVQGE-TAHLTPRGST 333
                   *************************************************88777666665.467*****98 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   2.2e-19   2.6e-16       1      46 []       5      50 ..       5      50 .. 0.98

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 2.2e-19
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                ti DVAr+AGVSk +VS+ Ln+++ Vse+tr+r++a+++e+++ P+
  KIR65462.1  5 TIADVARRAGVSKGAVSYALNGQPGVSEATRQRILAIAAEIGFSPS 50
                89******************************************96 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   2.7e-19   3.2e-16      13     211 ..      78     272 ..      71     326 .. 0.87

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 2.7e-19
                   SHHHHHHHHHHHHHHHHHTEEEEE.EE-SSHHHHHHHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EEEE-HHHHHHH CS
  Peripla_BP_1  13 ePffldlvkgitkaakehgvdvll.laageeedlakaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPcvipddtqagee 108
                   ePff++l++g++ ++++  ++++l + a+ ++++a + +  +++++dg+ ++ + t+  ++ a +e ++p + ++  +    g+  v+ dd +a  e
    KIR65462.1  78 EPFFMELISGVEAELSARSYALTLqVVADPDAEIAVYRRWWAERRVDGVFVCDLRTDDRRVPALEELQLPAVVIGGPGHTG-GLAHVWSDDATALVE 173
                   7****************999998735556677888*****************888887899999999**********9999.*************** PP

                   HHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-.SSSSHHHHHHHHHHHHTT-..TT-SEEE-SSHHHHHHHHHHHHHT CS
  Peripla_BP_1 109 stqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhval.gsndiedaaealnellesh..PeidaivaindeaalGavlalkke 202
                     ++L+a gh+r ia ++g  s l ++ r + f +  a  Gl   d  v    + + e++a a   ll+s+  P+  a++ +nd +a+ +  +++  
    KIR65462.1 174 TVEYLVALGHRR-IARVGGLPSLLHTEVRSDAFTEVCARLGL---DESVTVwSDYTGEEGARATRRLLSSPhrPT--AVIYDNDVMAVAGLSVAQEM 264
                   ************.*****************************...444443045677899**********99***..******************** PP

                   T.--GGGEE CS
  Peripla_BP_1 203 Grlkikeev 211
                   G l  +++ 
    KIR65462.1 265 G-LTVPGDL 272
                   *.8877776 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.5e-05     0.054      22      43 ..       4      25 ..       2      27 .. 0.91
   2 !    6.5   0.0    0.0064       7.6      20      47 ..      30      61 ..      22      63 .. 0.77
   3 ?    1.3   0.0      0.27   3.3e+02      21      36 ..     203     217 ..     174     219 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.5e-05
                EEHHHHHHHHTSSHHHHHHHHH CS
      MarR_2 22 ltvgelarrlglsksavsrilk 43
                 t++++arr g+sk+avs++l+
  KIR65462.1  4 PTIADVARRAGVSKGAVSYALN 25
                499****************997 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0064
                S....EEEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 20 r....dltvgelarrlglsksavsrilkrLva 47
                     + ++ ++a++ g s+s++ r+l  ++a
  KIR65462.1 30 VseatRQRILAIAAEIGFSPSSAARALSGASA 61
                45555567889***************987776 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.27
                 EEEHHHHHHHHTSSHH CS
      MarR_2  21 dltvgelarrlglsks 36 
                 d + +e+++rlgl+ s
  KIR65462.1 203 D-AFTEVCARLGLDES 217
                 3.8899******9976 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0028       3.4      19      39 ..       4      24 ..       1      26 [. 0.85
   2 ?    5.2   0.1     0.015        18      15      40 ..      33      57 ..      30      58 .. 0.82
   3 ?    0.3   0.0      0.51   6.1e+02      21      33 ..     205     217 ..     198     219 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0028
                -BHHHHHHHHTS-HHHHHHHH CS
    HTH_IclR 19 ltlselArrtglpkStvhRlL 39
                 t++++Arr+g++k +v+  L
  KIR65462.1  4 PTIADVARRAGVSKGAVSYAL 24
                489************998766 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.015
                TBSS-BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 15 apqeltlselArrtglpkStvhRlLq 40
                a++  ++  +A+++g ++S++ R L+
  KIR65462.1 33 ATRQ-RILAIAAEIGFSPSSAARALS 57
                5554.7889**************885 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.51
                 HHHHHHHHTS-HH CS
    HTH_IclR  21 lselArrtglpkS 33 
                 ++e+++r+gl  S
  KIR65462.1 205 FTEVCARLGLDES 217
                 79********988 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.9e-05     0.023      18      34 ..       5      21 ..       1      23 [. 0.89
   2 ?   -0.6   0.1      0.99   1.2e+03      21      31 ..      40      50 ..      37      52 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.9e-05
                -HHHHHHHHTSSHHHHH CS
      TetR_N 18 tvreIAkrAGvskgalY 34
                t++++A+rAGvskga+ 
  KIR65462.1  5 TIADVARRAGVSKGAVS 21
                89*************86 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.99
                HHHHHHTSSHH CS
      TetR_N 21 eIAkrAGvskg 31
                +IA++ G s++
  KIR65462.1 40 AIAAEIGFSPS 50
                89*****9987 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.3e-06    0.0075     125     220 ..     185     281 ..      76     315 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.3e-06
                   EEEEETSCCCHHHHHHHHHHHHHHHHH...-TTCEECCEEESTTTCHHHHHHHHHHHHH.TT.TECEEEESSCCHHHCHHHHHHHTTT..TSTEEEE CS
  Peripla_BP_4 125 kvvilaGspgdpnaeeriegfrkvlke...ypgikivaevaganwdaekaqqaleallt.an.pldgilaandgmaegalealeaagl..agkvvvt 214
                    ++ + G p+  ++e r ++f++v +    + ++++ +     +++ e++ +a+  ll+ ++ p  +++  nd+ma + l+  ++ gl   g+  ++
    KIR65462.1 185 RIARVGGLPSLLHTEVRSDAFTEVCARlglDESVTVWS-----DYTGEEGARATRRLLSsPHrP-TAVIYDNDVMAVAGLSVAQEMGLtvPGDLSIV 275
                   5777788888899999********77766555999999.....9***************99955.677779*****************877776799 PP

                   EES-HH CS
  Peripla_BP_4 215 gqDatp 220
                   ++D +p
    KIR65462.1 276 AWDDSP 281
                   999765 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.4   2.3e-05     0.028      16      54 ..       5      45 ..       3      55 .. 0.75
   2 ?    2.0   0.2      0.22   2.6e+02      19      55 ..      40      76 ..      33      79 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.3e-05
      HTH_31 16 sqeevAerlgvsestlsrlEqGrrgrpspa...vlealaral 54
                + ++vA+r+gvs+  +s   +G+ g +s+a    + a+a   
  KIR65462.1  5 TIADVARRAGVSKGAVSYALNGQPG-VSEAtrqRILAIAAEI 45
                5689********************9.8666222555555555 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.22
      HTH_31 19 evAerlgvsestlsrlEqGrrgrpspavlealaralg 55
                + A+ +g+s+s   r  +G+  +    +l + ar+lg
  KIR65462.1 40 AIAAEIGFSPSSAARALSGASANAVGLALCRPARILG 76
                679999*********9999987555556666666666 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.6e-05     0.031      11      52 ..       5      49 ..       5      52 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.6e-05
                HHHHHHHHHTSSHHHHHHHHTT...SSCSBHHHHHHHHHHHTSEH CS
       HTH_3 11 sqeeLAeklGvsrstisriEnG...ernPsletlkklakaLgvsl 52
                +++++A+++Gvs+ ++s   nG    ++ + ++++++a   g s+
  KIR65462.1  5 TIADVARRAGVSKGAVSYALNGqpgVSEATRQRILAIAAEIGFSP 49
                6789*********************************99988776 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00063      0.75      19      39 ..       5      25 ..       2      25 .. 0.91
   2 ?    1.3   0.1      0.21   2.5e+02      22      38 ..      40      56 ..      34      57 .. 0.85
   3 ?   -2.9   0.0       4.5   5.4e+03      21      32 ..     206     217 ..     205     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00063
      HTH_24 19 sqreLAerlglSpstvnrrlk 39
                +++++A+r g+S+++v++ l+
  KIR65462.1  5 TIADVARRAGVSKGAVSYALN 25
                899**************9985 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.21
      HTH_24 22 eLAerlglSpstvnrrl 38
                 +A ++g Sps   r l
  KIR65462.1 40 AIAAEIGFSPSSAARAL 56
                79*********998876 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.5
      HTH_24  21 reLAerlglSps 32 
                 +e++ rlgl  s
  KIR65462.1 206 TEVCARLGLDES 217
                 69999***9765 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.067        80      10      22 ..       5      17 ..       2      24 .. 0.86
   2 ?    7.7   0.0    0.0032       3.9       6      28 ..      33      55 ..      31      57 .. 0.85
   3 ?   -2.2   0.0       4.3   5.1e+03      12      23 ..     206     217 ..     202     217 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.067
                -HHHHHHHTTSSH CS
    HTH_AraC 10 tiediAdelgfSr 22
                ti+d+A  +g+S 
  KIR65462.1  5 TIADVARRAGVSK 17
                8*********996 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0032
                SCT--HHHHHHHTTSSHHHHHHH CS
    HTH_AraC  6 stnltiediAdelgfSrsyFsrl 28
                +t+ +i  iA+e gfS+s   r+
  KIR65462.1 33 ATRQRILAIAAEIGFSPSSAARA 55
                78889*************87776 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.3
                 HHHHHHTTSSHH CS
    HTH_AraC  12 ediAdelgfSrs 23 
                 +++++ lg+++s
  KIR65462.1 206 TEVCARLGLDES 217
                 799*****9876 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0024       2.9      22      45 ..       2      25 ..       1      26 [. 0.91
   2 ?    3.4   0.1     0.056        67      25      47 ..      37      59 ..      32      64 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0024
      HTH_10 22 RrvtlkeLAkelGIskstlsehLr 45
                +r t++++A + G+sk ++s+ L+
  KIR65462.1  2 KRPTIADVARRAGVSKGAVSYALN 25
                67799****************996 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.056
      HTH_10 25 tlkeLAkelGIskstlsehLrka 47
                ++ ++A e+G s+s++   L+ a
  KIR65462.1 37 RILAIAAEIGFSPSSAARALSGA 59
                6778************9999877 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0087        10      19      35 ..       5      21 ..       3      25 .. 0.88
   2 ?    3.2   0.3     0.068        81      16      36 ..      34      54 ..      30      57 .. 0.84
   3 ?   -2.4   0.0       3.8   4.5e+03      20      32 ..     205     217 ..     204     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0087
  HTH_AsnC-type 19 syaeLAervGlSestvl 35
                   + a++A+r G+S  +v 
     KIR65462.1  5 TIADVARRAGVSKGAVS 21
                   689***********996 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.068
  HTH_AsnC-type 16 aRisyaeLAervGlSestvlr 36
                    R    ++A+++G S+s ++r
     KIR65462.1 34 TRQRILAIAAEIGFSPSSAAR 54
                   6777889**********9988 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.8
  HTH_AsnC-type  20 yaeLAervGlSes 32 
                    ++e+ +r+Gl+es
     KIR65462.1 205 FTEVCARLGLDES 217
                    67888999*9986 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.033        40      22      41 ..       5      24 ..       4      25 .. 0.89
   2 ?    4.6   0.2     0.024        28      25      40 ..      40      55 ..      31      57 .. 0.83
   3 ?   -3.6   0.0       8.2   9.8e+03      22      28 ..     182     188 ..     181     189 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.033
      HTH_38 22 slreIArrLgrspsTIsREl 41
                +++++Arr g+s++ +s+ l
  KIR65462.1  5 TIADVARRAGVSKGAVSYAL 24
                789**********9999865 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.024
      HTH_38 25 eIArrLgrspsTIsRE 40
                +IA ++g sps+ +R 
  KIR65462.1 40 AIAAEIGFSPSSAARA 55
                8**********97775 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 8.2
      HTH_38  22 slreIAr 28 
                 + r+IAr
  KIR65462.1 182 GHRRIAR 188
                 5799998 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.17     2e+02      19      36 ..       5      22 ..       5      31 .. 0.80
   2 ?    7.1   0.0    0.0041       4.9       3      31 ..      31      61 ..      29      78 .. 0.81
   3 ?   -3.6   0.2       9.4   1.1e+04      38      48 ..     115     125 ..     113     126 .. 0.60

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.17
      HTH_23 19 svreIAreLgvsrrTvyr 36
                +++++Ar+ gvs+  v+ 
  KIR65462.1  5 TIADVARRAGVSKGAVSY 22
                6899********999983 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0041
      HTH_23  3 sereRlrillllae.GlsvreIAreL.gvsr 31
                se  R+ril  +ae G s++ +Ar+L g s 
  KIR65462.1 31 SEATRQRILAIAAEiGFSPSSAARALsGASA 61
                6778999999999889999999999866655 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 9.4
      HTH_23  38 lkryreeGleg 48 
                 +++++e  ++g
  KIR65462.1 115 RRWWAERRVDG 125
                 55676666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2440.35
//
Query:       KIR65463.1  [L=427]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-27   96.7  10.8    2.4e-27   96.7  10.8    1.5  2  SBP_bac_1  Bacterial extracellular solute-binding protein
    5.5e-27   95.3   9.8    7.1e-27   94.9   9.8    1.1  1  SBP_bac_8  Bacterial extracellular solute-binding protein
     0.0021   17.5   0.3     0.0061   16.0   0.1    1.8  2  SBP_bac_6  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7  10.8   3.9e-31   2.4e-27      13     314 ..      56     334 ..      51     335 .. 0.87
   2 ?   -2.9   0.0      0.85   5.1e+03     166     199 ..     370     414 ..     351     423 .. 0.58

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 3.9e-31
                 HHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHT.....TSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE.E CS
   SBP_bac_1  13 lvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlaka.....glllpldpyvkaylapgvkdaadklsssvlpkilds.k 105
                 l  +++e+ehp++k++++s+++++ ++ l++ + aG+g+aD++a+d +++ ++ ++     +ll      ++ +  p++++ ++++++++  +  ++ +
  KIR65463.1  56 LK-TKYEAEHPNVKIQLNSGEYNAQHEDLQKKLVAGSGAADIAAIDEGYVVQFRSQsdkfvNLLDKGAGSFESKYLPWKWKQTLSADGKTQIGLGTDvG 153
                 44.679***************************************999999999999989999999999999*************99988755555444 PP

                 EESEEEEEEEEEEEETTTHHCTTGGG........SHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSH CS
   SBP_bac_1 106 vlyvPlyaargliYNkdlfekagldp........pwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvta 196
                           ++ Y++dlf+ agl+         ++tWd ++e+++  ++k+kk+      + +sgt+  + +   +++g                   
  KIR65463.1 154 --------GLAMCYRTDLFAAAGLPTdrdqvsalWPTWDKFIEVGQQYTGKTKKK------FIDSGTNLFNPILGQQQAG------------------- 219
                 ........***********************************************......8888888888877777777................... PP

                 HHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHH......TTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEE CS
   SBP_bac_1 197 atylvklyavanltkelkgkgaenkdgaaalalfe......aGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgaygl 289
                   y +  +    l+++ ++k+a ++++ a++a+++      + +++ ++ ++  a  a  +   +  ++++++ ++++++a++P+g g+     g++ l
  KIR65463.1 220 -FYNEQEQ----LQMDGGPKVAFDYTVKALQADISaklvsfQADWDKGFTSGAFAVLACPAWMLGHIKDTAPGTEGKWDIAAVPGGGGNW----GGSFL 309
                 .3333333....6678888888888888888888888888877777777777777777767779999*****************998884....8888* PP

                 EEBTTCSTHHHHHHHHHHHTSHHHH CS
   SBP_bac_1 290 aipkgsknpeaAkkFldfllspeaq 314
                 +ipk+skn ++A k+l++l  pe+q
  KIR65463.1 310 TIPKQSKNVDEAYKLLEWLVQPEQQ 334
                 ************************9 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.85
                 HHHHHHHHHHHTGGGEECCCT...........HHCSHHHHSHHHH CS
   SBP_bac_1 166 yyfalalakslggkvfdkdgg...........gldnpegvtaaty 199
                 ++ +  +a++l +++ +k++g           +++n++ + +a++
  KIR65463.1 370 GQIFPKMAQGLTPQYQGKKNGptrvnvenvirRVENGTLKPDAAW 414
                 455556667777777777777666655555554444444443333 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   9.8   1.2e-30   7.1e-27       3     276 ..      57     358 ..      55     365 .. 0.80

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 1.2e-30
                 HHHHHHH-.TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHH.TTSB--GG....GSTTHHH-.HHHHHTT--TS..----EEEEEE CS
   SBP_bac_8   3 akefekkt.gvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlae.eglladls....dldnlddl.tdalaavgydgk.lygvPyaset 93 
                   ++e+++ +vk+++ + ++n   + l+ +l ag++ ++d++ ++e+++ ++   ++++++l      + ++++l  +++++ + dgk   g+  +++ 
  KIR65463.1  57 KTKYEAEHpNVKIQLNSGEYNAQHEDLQKKLVAGSG-AADIAAIDEGYVVQFRSqSDKFVNLLdkgaGSFESKYLpWKWKQTLSADGKtQIGLGTDVGG 154
                 679********************************8.78999999999777766599999887344444455554333555558899978899999996 PP

                 E-EEEEEHHHHHHS...........---BHHHHHHHHHHHHHH-..SEGG---GGGGGGTHHETTEE---H.....HHH..HHHHHHHHHHHHTT-... CS
   SBP_bac_8  94 pyvliynkdlleka..........edpktwdellaaakklkgkf..glpdpasgwlqaallakdgksldddg...gkdgl.kealellkklkdngk... 173
                   +++y++dl+ +a            + twd++ ++ ++++gk+   + d++++ +  +l + +++ + +     ++dg  k a+++  k  ++     
  KIR65463.1 155 -LAMCYRTDLFAAAglptdrdqvsALWPTWDKFIEVGQQYTGKTkkKFIDSGTNLFNPILGQ-QQAGFYNEQeqlQMDGGpKVAFDYTVKALQADIsak 251
                 .9**********878888887777788*************9888776668888877666666.444443322235566664667777777655553244 PP

                 EE-S..--SSTTTTTSBSEEEE-TTHHHHHH-TTT....SEEEE.--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---BS-S- CS
   SBP_bac_8 174 tydtgadavsefanGevaftingswdiaaaqkagk....klgai.vpkqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektgyipvnks 267
                  ++ +ad+ + f++G +a    + w +  +++  +    k+ ++ vp  g  +gg++l +pk++kn d+ A ++l+wl++pe+q + ++k g +p+ ++
  KIR65463.1 252 LVSFQADWDKGFTSGAFAVLACPAWMLGHIKDTAPgtegKWDIAaVPGGGGNWGGSFLTIPKQSKNVDE-AYKLLEWLVQPEQQIEIFKKVGNLPSQPA 349
                 668899*************************665444569999989**********************7.***************************** PP

                 TTTHHHHHH CS
   SBP_bac_8 268 aalspevkk 276
                 ++++p++++
  KIR65463.1 350 LYADPAIAE 358
                 ***999985 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.26   1.6e+03      53      75 ..     149     171 ..      98     199 .. 0.65
   2 !   16.0   0.1     1e-06    0.0061     145     220 ..     269     355 ..     243     369 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.26
   SBP_bac_6  53 pygvgplvlavnkdrlkgrpvPk 75 
                 + +vg l + + +d +++  +P+
  KIR65463.1 149 GTDVGGLAMCYRTDLFAAAGLPT 171
                 44455555555555555555554 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1e-06
   SBP_bac_6 145 avsvvpyffadilpekkkgk..nlkv.vwPedGalvspifmlvkkg.kkkelakafidfllspevqailakaggvfPvv.......t 220
                 av   p+++   ++    g   ++++  +P  G+     f+ ++k+ k+ ++a++++++l++pe q  + k  g++P++       +
  KIR65463.1 269 AVLACPAWMLGHIKDTAPGTegKWDIaAVPGGGGNWGGSFLTIPKQsKNVDEAYKLLEWLVQPEQQIEIFKKVGNLPSQpalyadpA 355
                 55555666666666555555556666258889********************************77666666666**9755532222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2881.70
//
Query:       KIR65464.1  [L=335]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-20   74.3  12.4      1e-20   74.3  12.4    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.4   9.9         1   1.8e+04      21      60 ..      40     126 ..      29     128 .. 0.66
   2 !   74.3  12.4   5.7e-25     1e-20       2     184 ..     118     331 ..     117     332 .. 0.89

  Alignments for each domain:
  == domain 1  score: -5.4 bits;  conditional E-value: 1
  BPD_transp_1  21 rpliivllslPsfvlaillvlvf.....................................................vilsilghlilpviill 60 
                   +++      +P++ +a++++l++                                                     ++ls+l +l l+++i++
    KIR65464.1  40 MRY------MPYLMIAPFFLLFAvfglfpllfngvvslrnyelddptlpywagfdnfarlagdedfwnalyntfgiFLLSSLPQLLLALVIAS 126
                   444......455555555443333445566778888888888888888888888888888888887777777777666677777777766665 PP

  == domain 2  score: 74.3 bits;  conditional E-value: 5.7e-25
  BPD_transp_1   2 illGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvf.....................vilsilghlilpviillllsaapyvrlirraa 75 
                   +ll++++a  lnr+ + + + r+ i +++ +P+++  +++ ++f                      +  +  h++++v++++ + +++y+ l++ aa
    KIR65464.1 118 LLLALVIAslLNRRLRAQTWWRVGILLPYVTPIVASTMVFSVFFsrdfgmanwllgpfgggdapiDWRADKLHSWIAVATMVNWKWIGYNALLYLAA 214
                   68899999999999999******************999999999********************99999999************************* PP

  BPD_transp_1  76 lrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG......lgtllleailgydyseis..nggvlalvia 164
                   ++s+p+d +eaa ++Ga++w+ ++++++P++ p+++ +++l+ +g l  ++ + ++  +         g + + a+l+y + +     g+++a+  a
    KIR65464.1 215 MQSIPRDVYEAAAIDGAGPWKQLWRITVPMIQPVVVFTVVLSTIGGLQLFTEPMLFDLNAQaatggpNGEWQTIAQLIYKVGWKDlnLGYAAAMSWA 311
                   ***********************************************99998877654444223333666666666666666555**9********* PP

  BPD_transp_1 165 vlllnlvadilqrlldprvr 184
                   ++l++lv+  ++++l  r++
    KIR65464.1 312 LFLIILVVAGINTWLTSRLS 331
                   ***************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2320.47
//
Query:       KIR65465.1  [L=811]
Description: beta-mannosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-10   39.7   0.0    1.2e-09   38.8   0.0    1.5  1  Glyco_hydro_2    Glycosyl hydrolases family 2
     0.0029   16.8   0.0      0.017   14.3   0.0    1.9  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom
  ------ inclusion threshold ------
       0.18   12.2   0.8        2.7    8.5   0.0    2.8  2  CBM60            Ca-dependent carbohydrate-binding module xyl
        2.4    8.8   4.2        7.3    7.2   0.0    3.3  4  Cadherin-like    Cadherin-like beta sandwich domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_2  Glycosyl hydrolases family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   2.7e-13   1.2e-09      16     110 .]     206     293 ..     193     293 .. 0.76

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 2.7e-13
                    SEEEEEEEEEEEEECSSSSCEEEEEEEEETTSTEEEEEEEEEEEESTT-EEEEEEEEEES--BBEC...CCB--EEEEEEE.EETTEEEEEEEEEE CS
  Glyco_hydro_2  16 ksakvevevelendsdksvevtleteikdaegkkvkeessvlslgngetksiklelevknpklWsp...etPnLYtlkvel.dkdgkvidevstrf 107
                      ++vev ve+e++ d++v+v+ ++ ++ ae+ +++ e++ +            ++ev++p+lW+p   +++ L+ l v+l  +dg+++d  s+r+
     KIR65465.1 206 GVGRVEVVVEVERAADEPVTVRATVAGSAAEAVVAAGERTAVL-----------TVEVRDPALWWPrgyGDQPLHPLDVTLhAADGRELDAWSRRI 290
                    5566666666677777777777666666555555555444433...........7899***********9************************** PP

                    -B- CS
  Glyco_hydro_2 108 GfR 110
                    GfR
     KIR65465.1 291 GFR 293
                    **9 PP

>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.7e-06     0.017     106     157 ..     395     464 ..     306     466 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.7e-06
                      GHHHHHHHHHHHHHHHTT-TTEEEEEEEESS..................CHHHHHHHHHHHHHHH-TTSE CS
  Glyco_hydro_2_C 106 wlkavldrieelverdkNHpsviiWSlgNEs..................gagedikalaelikklDptRl 157
                      + + v   ++e v+r   Hps+++W   NE                   g g++++ l +++ +lDptR+
       KIR65465.1 395 FRSEVEAEAREQVTRLAAHPSLVLWTGNNENiwawhdwgwqerlagrtwGRGYYLELLPRVVAELDPTRP 464
                      33444556889999**********************************99*******************8 PP

>> CBM60  Ca-dependent carbohydrate-binding module xylan-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0006       2.7      19      68 ..      95     144 ..      88     145 .. 0.73
   2 ?    0.3   0.2      0.21   9.4e+02       4      47 ..     212     255 ..     209     260 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0006
       CBM60  19 rllvdGqkvgeadvasteaktytftadlt..agahklqirylNDlyvga.gqD 68 
                 +l v+G++vg a+      + y+f + ++  +ga++l++r++  +   +  +D
  KIR65465.1  95 TLAVNGVEVGRAE---NMHRGYRFAVADAlrPGANTLTVRFDSPYRYAEaHRD 144
                 789*******999...45666777766665599********988533323555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.21
       CBM60   4 VrAagdqagdeppefrllvdGqkvgeadvasteaktytftadlt 47 
                 V ++ + a dep+++r  v G++++ + +a++  + +t++++++
  KIR65465.1 212 VVVEVERAADEPVTVRATVAGSAAEAVVAAGERTAVLTVEVRDP 255
                 555556677889999999*****999998888888888888765 PP

>> Cadherin-like  Cadherin-like beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0016       7.3      25      72 ..      79     132 ..      64     143 .. 0.86
   2 ?   -0.6   1.0      0.44     2e+03      21      61 ..     202     241 ..     197     257 .. 0.50
   3 ?   -3.9   0.0         4   1.8e+04      29      49 ..     295     317 ..     293     320 .. 0.73
   4 ?   -0.7   0.0      0.49   2.2e+03      37      59 ..     662     683 ..     646     698 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0016
  Cadherin-like  25 dvdsvtitataedsvatvtvngvaveeg......stetkdvsLneGrnkieikv 72 
                    d+d+v +  +  d+vat+ vngv+v +       + +  +  L +G n+++++ 
     KIR65465.1  79 DADRVDLVCAGLDTVATLAVNGVEVGRAenmhrgYRFAVADALRPGANTLTVRF 132
                    778999999999**************999***9999999999*9****999875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.44
  Cadherin-like  21 dVdedvdsvtitatae.dsvatvtvngvaveegstetkdvsL 61 
                    +V++ v +v + ++ e +++  vtv+ + + +    ++ v  
     KIR65465.1 202 TVADGVGRVEVVVEVErAADEPVTVRATVAGS--AAEAVVAA 241
                    56666666666666665333333333333332..33333444 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 4
  Cadherin-like  29 vtitatae..dsvatvtvngvav 49 
                    v+++ +++   s +t+ vn+v+v
     KIR65465.1 295 VRLDTAPDahGSAFTLVVNDVPV 317
                    66677776668889999998875 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.49
  Cadherin-like  37 dsvatvtvngvaveegstetkdv 59 
                    ++v++vt +g+++ ++ t+  dv
     KIR65465.1 662 AAVTRVTADGEPRAKS-TYDLDV 683
                    3455555555555543.343333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5431.06
//
Query:       KIR65466.1  [L=562]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-68  229.9  23.0    3.9e-68  229.9  23.0    1.4  2  Sulfate_transp  Sulfate permease family
    3.9e-14   52.3   0.0    8.3e-14   51.2   0.0    1.5  1  STAS            STAS domain
  ------ inclusion threshold ------
       0.26   10.1   4.8        1.4    7.7   0.2    2.8  3  HCO3_cotransp   HCO3- transporter family


Domain annotation for each model (and alignments):
>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.9  23.0   6.5e-72   3.9e-68       3     380 .]      37     395 ..      36     395 .. 0.94
   2 ?   -3.6   0.2      0.57   3.4e+03     121     128 ..     413     420 ..     399     432 .. 0.42

  Alignments for each domain:
  == domain 1  score: 229.9 bits;  conditional E-value: 6.5e-72
  Sulfate_transp   3 gDliaGitvallaiPqalayallaglppiygLyssvvpqlvyalfGtsrqlavGpvavlslivgeiiakvaeeepekgieiattltllaGviqvl 97 
                      Dl+aG+tva++a+P+ala+++ +gl +++gL+++vv+++v+a+fG+s  +++Gp++++++++  ++++        g + ++++  laG+++++
      KIR65466.1  37 RDLLAGLTVAIVALPLALAFGVTSGLGAQAGLVTAVVAGAVAAVFGGSNLQVSGPTGAMTVVLVPVVQQF-------GPAGVLMVGALAGLVLIA 124
                     69*******************************************************************9.......99999************* PP

  Sulfate_transp  98 lGllRLgflveflseavlsGfiaGaaivillsqikvllglervskkeslvsvlsslftnlek.vnlakvvlgllllvvLlvtkellkklkkllvi 191
                     l l RLg++v++l+ +v+ Gf+aG+a+vi+l+q+   lg++  ++   +++v  + +  +    ++a+++++l + +++l++ +        + +
      KIR65466.1 125 LALARLGRYVRYLPTPVIEGFTAGIAVVIALQQVPAALGVT-DAHGDRVWAVAADAVARFVVhPRPAALAVALGVAALMLLGGR--------WRP 210
                     ****************************************8.8888899**999998887541446777777777776666666........568 PP

  Sulfate_transp 192 papaelvavivatlvsaifelkreagvkivgeipsglpelslpkvdwsllsallpdalaialvglleaiavsksldk.kkgykvdsnkELvAlGf 285
                      +p+ l+ v +at+++ ++      + + +g +p+glp++sl  +d+ ++  llp ala+a ++ le+++++ ++d  + g ++d++kEL+++G+
      KIR65466.1 211 GVPFSLLGVAAATILAETA----PVDLVRIGALPQGLPAPSLGFLDPGAVGVLLPSALAVAALAALESLLSATVADGmTVGERHDPDKELFGQGL 301
                     8**************9998....3455669*********************************************985679************** PP

  Sulfate_transp 286 sNilsslfgglpatgafsrsavnikaGaktqlsglvsalvvllvllvltplleyiPkavLaaiiivagkglLvelkelkklwklskldflillat 380
                     +N++s+lfgg+pat+a++r+avn++aGa+++l+ l +a+++++++l+++pl+  iP a+La++++   ++ +ve ++l  l + ++ d+l+l+ t
      KIR65466.1 302 ANLASPLFGGIPATAAIARTAVNVRAGASSKLAALTHAVALAAIVLAAAPLVGRIPLAALAGVLLATTVR-MVEAASLLALARATRGDALVLVLT 395
                     **********************************************************************.9999***************99875 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.57
  Sulfate_transp 121 Gaaivill 128
                     ++aivi+l
      KIR65466.1 413 AVAIVIAL 420
                     12222222 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   1.4e-17   8.3e-14       8     107 ..     449     538 ..     444     548 .. 0.92

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 1.4e-17
                 TTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHHHTTCGGCC. CS
        STAS   8 egililrldgpidfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevreklektgffdeve 106
                 e+i+ +rldgp++fa a++f  +l+++++            + +il +s vs +D +G+++L +++++l+ +g++v+l++i+p   + l ++g++de+ 
  KIR65466.1 449 EHIVAYRLDGPLFFAAAHTFLLQLSDVADV-----------RVVILRMSRVSALDATGAHVLGDAIRRLRGRGITVLLSGITPGHDQVLATLGVADELR 536
                 67899**********************996...........6******************************************************997 PP

                 .. CS
        STAS 107 .e 107
                   
  KIR65466.1 537 rD 538
                 44 PP

>> HCO3_cotransp  HCO3- transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.2   0.00023       1.4      64     169 ..      62     161 ..      43     178 .. 0.86
   2 ?   -1.2   0.0      0.11   6.6e+02      77      97 ..     211     231 ..     198     235 .. 0.86
   3 ?    3.1   0.1    0.0057        34     437     471 ..     341     375 ..     330     383 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00023
  HCO3_cotransp  64 igvseslvsaaisgilfalfagqpllilgstgPllvfekilykfckelgldylslrvwiglwlalillilvatdasalvkyitrfteeifallIsl 159
                    +g++  lv+a+++g + a+f+g  l + g tg + v   +l+ + +++g    +  +++g    l+l+ l++  +  +v+y+     e f++ I++
     KIR65466.1  62 LGAQAGLVTAVVAGAVAAVFGGSNLQVSGPTGAMTV---VLVPVVQQFGP---AGVLMVGALAGLVLIALALARLGRYVRYLPTPVIEGFTAGIAV 151
                    6788889********************999999876...78888888875...58899************************9999999**99999 PP

  HCO3_cotransp 160 ifiyealkkl 169
                    +  ++ +   
     KIR65466.1 152 VIALQQVPAA 161
                    9888776655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.11
  HCO3_cotransp  77 gilfalfagqpllilgstgPl 97 
                    g+ f+l++  + +il  t+P+
     KIR65466.1 211 GVPFSLLGVAAATILAETAPV 231
                    899*****************8 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.0057
  HCO3_cotransp 437 iliglsvlltpvlklIPmpVLyGvFLYmgvtsLkg 471
                     l ++ +  +p++  IP++ L Gv+L   v +++ 
     KIR65466.1 341 ALAAIVLAAAPLVGRIPLAALAGVLLATTVRMVEA 375
                    3455566678999*************888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4092.18
//
Query:       KIR65467.1  [L=394]
Description: hypothetical protein TK50_08655 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2988.95
//
Query:       KIR65468.1  [L=98]
Description: hypothetical protein TK50_08660 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 747.02
//
Query:       KIR65469.1  [L=601]
Description: dihydroxy-acid dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.2e-213  707.9   0.6   8.1e-213  707.7   0.6    1.0  1  ILVD_EDD  Dehydratase family


Domain annotation for each model (and alignments):
>> ILVD_EDD  Dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  707.7   0.6  4.5e-217  8.1e-213       1     517 []      20     595 ..      20     595 .. 0.95

  Alignments for each domain:
  == domain 1  score: 707.7 bits;  conditional E-value: 4.5e-217
    ILVD_EDD   1 kpiigiansyselvpchvhlkelaeavkegveeaggvpaefntigvsDgiamgeegmrysLpsReliadsvetmleaqllDalvlisgCDKivPgllma 99 
                 kpi++ians++++vp+hvhlk+l+  v+++v+eaggv+ efnti+v+Dgiamg+ gm ysLpsReliad+ve+m++a+++Dalv+is+CDKi+Pg+l+a
  KIR65469.1  20 KPIVAIANSFTQFVPGHVHLKDLGGLVADAVAEAGGVGREFNTIAVDDGIAMGHGGMLYSLPSRELIADAVEYMVNAHCADALVCISNCDKITPGMLLA 118
                 8************************************************************************************************** PP

    ILVD_EDD 100 aarlniPaifvsgGpmeagkkk........kldlssvfeavgalaagkiseeeleeleeaacpgaGsCsgmgTAntmaclaealGlslpgsasipatsa 190
                 a+rl+iP++fvsgGpmeagk+         k+   + ++a+ a +++ +++++l e+e++acp++GsCsgm+TAn+m+cl+ea+Gl+lpg++s+ at+a
  KIR65469.1 119 ALRLDIPTVFVSGGPMEAGKTVaiegivhsKI---DLIDAMIASSNEAVTDDQLGEIERSACPTCGSCSGMFTANSMNCLTEAIGLALPGNGSTLATHA 214
                 ******************88555666543333...5669************************************************************ PP

    ILVD_EDD 191 erkelaeeagkrivelv.......ekdlkprdiltkeafeNAivvllalGGStNavlHllAiAreagveltlddfdelsrkvpllaklkP.sgkydmed 281
                 +r++l+ eag+++ve++       + ++ pr+i++++afeNA+++++a+GGStN++lHllA+Area+++++++d+d++sr+vp+lak++P s +y+med
  KIR65469.1 215 ARRSLFVEAGRTVVEIAkrwydgdDASVLPRQIANRAAFENAVALDVAMGGSTNTILHLLAAAREAELDFSVADIDAVSRRVPCLAKVAPnSPNYHMED 313
                 ****************9888876444499*************************************************************999****** PP

    ILVD_EDD 282 lhraGGvpavlkeLlkagllhgdvltvtgktlaenleeaev......................................keqdvirplekplskeggla 342
                 +hraGG+pa+l eL++agllh+dv++v++ +la+ l++ +v                                      +++ ++r+ e+++s++ggla
  KIR65469.1 314 VHRAGGIPAILGELDRAGLLHRDVHSVHSPSLAQWLADWDVrggsatpeaielfhaapggvrttepfsttnrwstldtdAASGCVRDREHAYSADGGLA 412
                 *********************************99988666799999999999999999******************9999****************** PP

    ILVD_EDD 343 vLkGnLapeGavvKtsaveeellkfegpArvfdseeeaveailkgkikagdvvviryeGPkGgpGmpEmlkptsallgkglgkkvalitDGRfSGaskg 441
                 +L+GnLap+G+vvKt++v ee l+f+gpA+v++s+++av+ail+++i agdvvviryeGPkGgpGm+Eml+pts l+g+glg+++al+tDGRfSG+++g
  KIR65469.1 413 ILHGNLAPDGCVVKTAGVPEECLTFRGPAKVYESQDDAVTAILAKEIVAGDVVVIRYEGPKGGPGMQEMLYPTSFLKGRGLGRSCALLTDGRFSGGTSG 511
                 *************************************************************************************************** PP

    ILVD_EDD 442 lvighvsPEAaegGpialvedGDiieidiekrtlelevseeelaaRr.aawkpekkv........ktrgllakyaklvssaseGA 517
                 l+ighvsPEAa+gG ialve GD i idi+ rt+el+v ++ l+aRr a+ k+ +k+          + +l++ya++++sas+GA
  KIR65469.1 512 LSIGHVSPEAASGGLIALVEPGDEIVIDIPGRTIELNVPDDVLEARRiAQEKR-PKPytpadrqrPVSAALRAYASMATSASDGA 595
                 ***********************************************765554.333457777744499***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 4717.11
//
Query:       KIR65470.1  [L=626]
Description: acetolactate synthase 1 catalytic subunit [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-56  188.4   1.2    1.9e-55  187.1   0.7    1.9  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    5.9e-49  165.3   0.1    1.6e-48  163.9   0.2    1.7  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
    4.3e-48  163.0   0.4    3.5e-47  160.0   0.3    2.5  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
  ------ inclusion threshold ------
      0.011   15.5   0.3       0.02   14.6   0.3    1.4  1  POR_N         Pyruvate flavodoxin/ferredoxin oxidoreductase, 
      0.012   15.4   0.0       0.02   14.6   0.0    1.3  1  CO_dh         CO dehydrogenase beta subunit/acetyl-CoA syntha
      0.023   13.5   0.0      0.039   12.8   0.0    1.3  1  XFP_N         XFP N-terminal domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.1   0.7   6.5e-59   1.9e-55       3     168 ..      51     214 ..      49     216 .. 0.98
   2 ?   -3.5   0.0       2.2   6.7e+03     139     158 ..     570     589 ..     566     590 .. 0.83

  Alignments for each domain:
  == domain 1  score: 187.1 bits;  conditional E-value: 6.5e-59
                   HHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEEE CS
  TPP_enzyme_N   3 vaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsgd 99 
                   +a  lvr L+algv++vfg+pG+ ilp +d l ++  +r++l+rhEqga++aA gya+atg++gv+++tsgpGatn++t +a+A+ d++P+++++g+
    KIR65470.1  51 GAGSLVRSLEALGVDVVFGIPGGAILPAYDPLYDS-TVRHILVRHEQGAGHAATGYAQATGRVGVCMATSGPGATNLVTPIADAYMDSVPMVAITGQ 146
                   7788*******************************.5************************************************************ PP

                   --CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EE CS
  TPP_enzyme_N 100 rptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleev 168
                   +++ ++g++++q e d++++  p+tk+++ v+++ee+p++l++A+  a +grpgPv++++pkdvl++++
    KIR65470.1 147 VARPSIGTDAFQ-EADIQGITLPITKHNFLVQTAEEIPRVLAEAFHLASTGRPGPVLVDIPKDVLQAQT 214
                   ************.****************************************************9987 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.2
                   HHHHHHHHHHSSS--EEEEE CS
  TPP_enzyme_N 139 alrrAirtalsgrpgPvyle 158
                    +++ i++a+  +  Pv+++
    KIR65470.1 570 DVDKTIEAAMAINDAPVVID 589
                   68899999999999999997 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.2   6.6e+03      31      59 ..      55      83 ..      48      89 .. 0.83
   2 !  163.9   0.2   5.3e-52   1.6e-48       1     137 []     238     373 ..     238     373 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.2
                  HHHHHHHHT-EEEEEGGGTTSS-TTSTTE CS
  TPP_enzyme_M 31 lrelaeklgiPvvttlmgkgvipedhply 59
                  l++ +e+lg+ vv    g  ++p  +ply
    KIR65470.1 55 LVRSLEALGVDVVFGIPGGAILPAYDPLY 83
                  66677999999999999999999999998 PP

  == domain 2  score: 163.9 bits;  conditional E-value: 5.3e-52
                   HHHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   i++aa l+ +a+rpv++vGggv  +ga+e lr+lae +giPvvttlm+ g++p++h ++lgm g+hg+ aa   l++aDl++alGarfdd r+tg+ 
    KIR65470.1 238 IREAARLMTSARRPVLYVGGGVLKAGATEGLRRLAELTGIPVVTTLMALGAFPDSHRQHLGMPGMHGTVAAVYGLQKADLIVALGARFDD-RVTGKL 333
                   789***************************************************************************************.9***** PP

                   TTTTTT-EEEEEESSCCCCTTCC--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  98 pefapeakiihididpaeigknyqvdlaivgdvketleaL 137
                   + fap+a+++h didpaeigkn+++d++ivgd+k ++e+L
    KIR65470.1 334 DSFAPDATVVHADIDPAEIGKNRHADVPIVGDAKHVIEEL 373
                   *************************************987 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.33   9.7e+02     127     153 .]     176     205 ..     153     205 .. 0.84
   2 !  160.0   0.3   1.2e-50   3.5e-47       1     152 [.     437     589 ..     437     590 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.33
                   ESSH.HHHHHHHHHHHH.....CSSSEEEEEE CS
  TPP_enzyme_C 127 vekadveeleealkeal.....ekkgpaliev 153
                   v++a  ee+ ++l+ea+      + gp+l+++
    KIR65470.1 176 VQTA--EEIPRVLAEAFhlastGRPGPVLVDI 205
                   5566..99999999999999999999999996 PP

  == domain 2  score: 160.0 bits;  conditional E-value: 1.2e-50
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTC CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfgg 97 
                   ++G++++wa++++++++p+++l+sgglgtmGy++paA+Gak+ +pd  v+ai GDG+f+m+ qelat++ +++p+++ v+nN+ +gm++++q+ f++
    KIR65470.1 437 GVGQHQMWASQFISYEKPGTWLNSGGLGTMGYAVPAAMGAKVGRPDTVVWAIDGDGCFQMTNQELATCALEGIPVKIAVINNGNLGMVRQWQTLFYN 533
                   69*********************************************************************************************** PP

                   CTTTTSBB...BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHH.CSSSEEEEE CS
  TPP_enzyme_C  98 krksgpagk..dlkpvdfaklaealGakgarvekadveeleealkeal.ekkgpalie 152
                   +r+s+++    + + +df+kl ealG+ g+r+e+a  +++++++++a+  ++ p++i+
    KIR65470.1 534 ERYSNTELGthKHRIPDFVKLGEALGCVGLRCENA--ADVDKTIEAAMaINDAPVVID 589
                   ****987557778889***************9999..***********98899***98 PP

>> POR_N  Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.3   6.8e-06      0.02      37     142 ..      86     193 ..      75     214 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.8e-06
                 E.EEEE-SSHHHHHHHHHH.HHCTT-EE.EEEEECCHHHHCCCCHHHHHHTT--EEEEEEEEE-STTBEEEEE--TTCHHHHS---EEEE-SSHHHHHH CS
       POR_N  37 dvevvqmesEigaisaviG.AaaaGara.aTaTSgqGllLmienlglaageelPvvivvvaRalpstglsirtdqsDlmaardtglivlasenvqeafd 133
                 +v+ + +  E ga  a+ G A a+G  +   aTSg+G    +  +  a ++ +P+v +  + a ps g+  +++       +      + +++++e+ +
  KIR65470.1  86 TVRHILVRHEQGAGHAATGyAQATGRVGvCMATSGPGATNLVTPIADAYMDSVPMVAITGQVARPSIGTDAFQEADIQGITLPITKHNFLVQTAEEIPR 184
                 567788899**********5556676542579****************************999999988777654322233344444555566666666 PP

                 HHHHHHHHH CS
       POR_N 134 lalvAfnlA 142
                   ++Af lA
  KIR65470.1 185 VLAEAFHLA 193
                 666666666 PP

>> CO_dh  CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   6.8e-06      0.02      24      70 ..     237     283 ..     233     302 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.8e-06
                 -SHHHHHHHHHSSSEEEEE-S--.-HH.HHHHHHHHHTSSSEEEEET CS
       CO_dh  24 alkvvakmikkakrPllivGpqvlkaeneeakekkilekklkvvata 70 
                 +++++a+++  a+rP+l vG+ vlka   e   +  +   ++vv t 
  KIR65470.1 237 QIREAARLMTSARRPVLYVGGGVLKAGATEGLRRLAELTGIPVVTTL 283
                 5789*******************************9999**999986 PP

>> XFP_N  XFP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.3e-05     0.039     129     168 ..     450     492 ..     443     503 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
       XFP_N 129 aaetPGs.iheG..GelGyalshayGavldnPdlivacvvGdG 168
                 + e PG+ ++ G  G +Gya+  a+Ga + +Pd +v ++ GdG
  KIR65470.1 450 SYEKPGTwLNSGglGTMGYAVPAAMGAKVGRPDTVVWAIDGDG 492
                 557788734555234789************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 4073.28
//
Query:       KIR65471.1  [L=171]
Description: acetolactate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.5e-30  102.8   0.1    3.2e-29  100.9   0.0    1.8  2  ALS_ss_C        Small subunit of acetolactate synthase
    4.5e-19   68.0   0.0    1.1e-18   66.9   0.0    1.6  1  ACT_5           ACT domain
    2.9e-17   62.1   0.1    5.7e-17   61.2   0.1    1.5  1  ACT             ACT domain
    2.6e-05   24.7   0.2    4.6e-05   23.9   0.2    1.4  1  ACT_4           ACT domain
  ------ inclusion threshold ------
      0.036   14.5   0.1       0.21   12.0   0.1    2.0  2  Saccharop_dh_N  LOR/SDH bifunctional enzyme conserved region


Domain annotation for each model (and alignments):
>> ALS_ss_C  Small subunit of acetolactate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.46   1.6e+03      29      53 ..      49      73 ..      39      79 .. 0.51
   2 !  100.9   0.0     9e-33   3.2e-29       1      74 []      85     158 ..      85     158 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.46
                EEEEETTEEEEEEEE-HHHHHHHHH CS
    ALS_ss_C 29 ivdvspdsliieltgteekidalie 53
                iv  +++s + ++t++ +k+ ++++
  KIR65471.1 49 IVVNAESSPLEQVTKQLNKLVNVLK 73
                4444444444444444444444443 PP

  == domain 2  score: 100.9 bits;  conditional E-value: 9e-33
                 EEEEEEEEE.-SCHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHS-GGGEEEEEEEEEEEEEST CS
    ALS_ss_C   1 RElaLiKVkaekeerseileiaeifrakivdvspdsliieltgteekidaliellkpfgilevvRtGrvAleRG 74 
                 REl+L+KV+a+ + rs++le+++ fra++vdv+pd+l+ie+tgt++k+dal++ l+p+gi+e+v++G+vA++RG
  KIR65471.1  85 RELLLVKVRADRAARSQVLETVNLFRARVVDVAPDTLTIEATGTPDKLDALLRDLEPYGIKEMVQSGTVAIGRG 158
                 9************************************************************************8 PP

>> ACT_5  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0     3e-22   1.1e-18       2      62 .]      13      74 ..      12      74 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 3e-22
       ACT_5  2 apgvLeRvlrvvrrrgFevkslnmsttedggtvrieltVes.ersvelLsnQleKLidVlkV 62
                +pgvL Rv ++++rrgF+++sl + +te+ + +ri+++V++ + ++e++++Ql+KL++Vlk+
  KIR65471.1 13 KPGVLARVSGLFSRRGFNIDSLAVGETENPDVSRITIVVNAeSSPLEQVTKQLNKLVNVLKI 74
                7**********************************************************986 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.1   1.6e-20   5.7e-17       1      66 [.       4      69 ..       4      70 .. 0.98

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 1.6e-20
                EEEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT  1 tvlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkle 66
                ++l+v+v+++PG+Larv+g++++rg+Nids+ ++++e   ++++++v+ ++ ++le+v ++l+kl 
  KIR65471.1  4 HTLSVLVENKPGVLARVSGLFSRRGFNIDSLAVGETENPDVSRITIVVNAESSPLEQVTKQLNKLV 69
                789*************************************************************96 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.2   1.3e-08   4.6e-05       8      78 ..       5      74 ..       3      75 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.3e-08
       ACT_4  8 rleveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdvehLsrviakLraipgVisV 78
                +l+v +e+++g+La+++ ++s  + ni s+ + ++++  + +i+i v+   ++ L++v ++L+++ +V ++
  KIR65471.1  5 TLSVLVENKPGVLARVSGLFSRRGFNIDSLAVGETENPDVSRITIVVNA-ESSPLEQVTKQLNKLVNVLKI 74
                799*******************************887557777777774.4678***********999886 PP

>> Saccharop_dh_N  LOR/SDH bifunctional enzyme conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   5.8e-05      0.21      30      70 ..      29      78 ..      16     108 .. 0.71
   2 ?    0.0   0.0      0.32   1.2e+03      49      75 ..     121     149 ..     112     161 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.8e-05
                    EEEEEEEXXSSTT.SXEEEEEEEEESSHHHHHHHHHHHHHH.........H CS
  Saccharop_dh_N 30 fevlefevGkkkk.dtSyaelevsaedeevLeeileeltel.........g 70
                    f++ ++ vG++++ d S  ++ v+ae+ + Le++ ++l++l         +
      KIR65471.1 29 FNIDSLAVGETENpDVSRITIVVNAES-SPLEQVTKQLNKLvnvlkivelD 78
                    99*******9865499*********98.78999999999984333333333 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.32
                     EEEEES.SHHHHHHHHHHHHHHHHHSC.C CS
  Saccharop_dh_N  49 levsae.deevLeeileeltelgaelv.e 75 
                     l+++a+ + ++L+++l++l+ +g + + +
      KIR65471.1 121 LTIEATgTPDKLDALLRDLEPYGIKEMvQ 149
                     56665425689999**9999999876634 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1208.43
//
Query:       KIR65472.1  [L=337]
Description: ketol-acid reductoisomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-75  250.0   0.3    1.1e-74  249.6   0.3    1.2  1  IlvN             Acetohydroxy acid isomeroreductase, NADPH-bi
    7.7e-66  220.8   0.1      1e-65  220.4   0.1    1.1  1  IlvC             Acetohydroxy acid isomeroreductase, catalyti
    1.5e-06   28.7   0.1    2.7e-06   27.9   0.1    1.5  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    1.9e-06   27.3   0.0    3.1e-06   26.7   0.0    1.2  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
    0.00013   22.2   0.0     0.0003   21.0   0.0    1.6  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
  ------ inclusion threshold ------
       0.01   15.9   0.0      0.024   14.7   0.0    1.5  1  AdoHcyase_NAD    S-adenosyl-L-homocysteine hydrolase, NAD bin
      0.055   13.8   0.2       0.12   12.7   0.2    1.6  1  Mur_ligase       Mur ligase family, catalytic domain
       0.19   10.9   0.0       0.32   10.2   0.0    1.3  1  Polysacc_deac_2  Divergent polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.6   0.3   4.7e-78   1.1e-74       2     165 .]      16     179 ..      15     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 249.6 bits;  conditional E-value: 4.7e-78
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-HHHHHHHHHHHTGGG--TT-EEEESSSHHHH CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliPDelqkevyeeeiepnlkegkalafahGfnih 100
                 ++ kk+aviGyGsqGha+al lrdsg+dvv+gl +gsks  kA+e+g++vlt aea+++adv+mil+PD++q+ +y+e+i+pnl  gkal f+hGfni+
  KIR65472.1  16 IQAKKVAVIGYGSQGHAHALSLRDSGVDVVIGLPAGSKSRPKAEEQGLRVLTPAEAAAEADVIMILAPDTAQRGLYTEAIAPNLAPGKALFFGHGFNIR 114
                 899************************************************************************************************ PP

                 TTSS---TTSEEEEEEESS-SHHHHHHHHTT----EEEEEEE-SSS-HHHHHHHHHHHTTHHHH- CS
        IlvN 101 fglikppkdvdvvlvAPkgpGhlvreeyeegkGvpaliaveqdasgkakelalayakgiGatraG 165
                 ++likpp+dvdv++vAPkgpGhlvr++y +gkGvp+l+aveqdasg+a++lalayakgiG+traG
  KIR65472.1 115 YDLIKPPADVDVAMVAPKGPGHLVRRQYVDGKGVPCLVAVEQDASGTAFALALAYAKGIGGTRAG 179
                 ****************************************************************9 PP

>> IlvC  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.4   0.1   4.5e-69     1e-65       1     144 []     185     328 ..     185     328 .. 1.00

  Alignments for each domain:
  == domain 1  score: 220.4 bits;  conditional E-value: 4.5e-69
                 HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT--HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHS-HHHHHHHHHHHHHH CS
        IlvC   1 FkeEtetDlfgEqavLcGgvselveagFetlveaGyspelAyfeclhelklivdliyegGiakmresiSdtaeygdltagprviteevkeemkeileei 99 
                 FkeEtetDlfgEqavLcGg ++lv++gFe+l+eaGy pe+Ayfeclhelklivdl+yegGia+mr+s+Sdtaeygdl++gprv++++vkeem++il+e+
  KIR65472.1 185 FKEETETDLFGEQAVLCGGAAALVQTGFEVLTEAGYAPEIAYFECLHELKLIVDLMYEGGIARMRYSVSDTAEYGDLSRGPRVVDARVKEEMRKILSEV 283
                 9************************************************************************************************** PP

                 HTTHHHHHHHHHHHTTSHHHHHHHHHHHTSHHHHHHHHHHHCHTT CS
        IlvC 100 qsGefakevieenkagrpelkklrkeeaeheiekvgkklralmpw 144
                 qsGefa+e+i+e ++grp++ k+r+e a h+ie +g+klr++m+w
  KIR65472.1 284 QSGEFAREWIAEDDNGRPNFAKWRAEGAAHPIEATGQKLRSMMSW 328
                 *******************************************98 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.1   1.2e-09   2.7e-06       1      76 [.      20      89 ..      20     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.2e-09
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHH CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedvee 76
                   k+++iG+G++g+a a+ l  +g    ++v++  +  +k +  aee g +v +   +eaa+eadv+ +  + ++   
     KIR65472.1 20 KVAVIGYGSQGHAHALSLRDSG---VDVVIG-LPAGSKSRPKAEEQGLRVLT--PAEAAAEADVIMILAPDTAQRG 89
                   79********************...****88.99999999999999988888..8899999****99877665555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.4e-09   3.1e-06      34     104 ..      16      87 ..       6     104 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.4e-09
                   GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH.CHHHHTCEECSHHHHHHH-SEEEE-S--STT CS
  2-Hacid_dh_C  34 lsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee.eeeelgvelvsleellaesDivslhlpltpe 104
                   ++ k+v++iG+G+ G+a a  l+  g++v++  +  +k++ ++ee+g+++ +  e+ ae+D++++ +p t++
    KIR65472.1  16 IQAKKVAVIGYGSQGHAHALSLRDSGVDVVIGLPAGSKSRpKAEEQGLRVLTPAEAAAEADVIMILAPDTAQ 87 
                   789*************************999999999888899999**********************8875 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.4e-07    0.0003       1      86 [.      20     105 ..      20     113 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.4e-07
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EE CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdeviegllealkkgdil 86 
                    k+++iG G  G+  al l ++g +v++     +k +  ++e+   + +++e++a++dv++++ +++++    +e ++++l++g+ l
     KIR65472.1  20 KVAVIGYGSQGHAHALSLRDSGVDVVIGLPAGSKSRPKAEEQGLRVLTPAEAAAEADVIMILAPDTAQRGLYTEAIAPNLAPGKAL 105
                    69************************99999999998888888888999***************99998888888*******9976 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.1e-05     0.024      20      83 ..      15      79 ..       9      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-05
                   --TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-.S-HHHHHHHHCTT-EE--HHHCTTT-SEEE CS
  AdoHcyase_NAD 20 llaGkvavvaGyGdvGkGcaaslkglGarvivte.vdPicalqaameGfevvtleevvkkadivv 83
                   l+  k++ v+GyG  G   a sl+  G  v++       +  +a  +G++v t  e++++ad+++
     KIR65472.1 15 LIQAKKVAVIGYGSQGHAHALSLRDSGVDVVIGLpAGSKSRPKAEEQGLRVLTPAEAAAEADVIM 79
                   78899*************************99751444556678888999999999999998876 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   5.5e-05      0.12      19      82 ..      21      74 ..      17      75 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.5e-05
                HHHTTSEEEEEESSHCHHHTT-EEEES-HGGGGEE-TS-TTCHHHHHHHHTTEEEEEHHHHHHH CS
  Mur_ligase 19 lalkGykvdGsdfieslialGaaavvghdaanivvssiskdnpeleaakepgipvesraeaLae 82
                +a  Gy  +G+ ++ sl+++G+ +v+g  a+           +  ++a e+g++v  +aea ae
  KIR65472.1 21 VAVIGYGSQGHAHALSLRDSGVDVVIGLPAG----------SKSRPKAEEQGLRVLTPAEAAAE 74
                57789**************************..........99999*********999999876 PP

>> Polysacc_deac_2  Divergent polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00014      0.32      25      75 ..      21      70 ..      10      81 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00014
                     EEEETTSTTHHHHHHHHHHCT-EEEEEEEE--TTTTT---TT-B-TTS-HH CS
  Polysacc_deac_2 25 lAilPyaphskelaeaaraaghevllhlPmepksypkdpgpgaLlvsmsee 75
                     +A++ y+++ ++ a   r++g +v + lP  +ks pk +++++L+v  ++e
       KIR65472.1 21 VAVIGYGSQGHAHALSLRDSGVDVVIGLPAGSKSRPK-AEEQGLRVLTPAE 70
                     89********************************999.5555555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2214.31
//
Query:       KIR65473.1  [L=532]
Description: 3-phosphoglycerate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-59  200.1   0.0      6e-59  198.4   0.0    1.8  2  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    5.6e-32  110.2   0.7    9.4e-32  109.5   0.7    1.4  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    3.6e-11   42.6   0.4    6.6e-09   35.4   0.1    3.1  3  ACT            ACT domain
     0.0092   16.2   1.9      0.035   14.3   0.0    2.8  3  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
  ------ inclusion threshold ------
      0.026   15.1   0.0       0.16   12.6   0.0    2.2  2  ACT_4          ACT domain
      0.048   13.5   0.0       0.14   12.0   0.0    1.8  1  ACT_5          ACT domain
      0.073   13.1   0.0       0.18   11.9   0.0    1.6  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.53   1.4e+03      52     114 ..       8      65 ..       6      78 .. 0.67
   2 !  198.4   0.0   2.3e-62     6e-59       1     178 []     106     280 ..     106     280 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.53
                   HHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTSBSHHHH CS
  2-Hacid_dh_C  52 akrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpltpetrhlinaeel 114
                   a+ l++  ++v+a+d   ++ +     g +   l  +l+e+D v++    + + + +  a +l
    KIR65473.1   8 AEELAPAAIEVLAHDFDVRHVD-----GTDRPALLSALSEADAVIVRSATQIDAEAIAAAPRL 65 
                   6667777778888887766443.....555567788888888888876666666655555555 PP

  == domain 2  score: 198.4 bits;  conditional E-value: 2.3e-62
                   HHHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivsl 97 
                   +allla++r++a a++++++gew ++++++g e++gktvG++GlGrIG  +a r++afg ++iayd++ ++ + +++lgv+lv leell+esD++s+
    KIR65473.1 106 VALLLAVARNTASASAALKAGEW-KRSKYTGVEVQGKTVGVVGLGRIGVLFASRMAAFGTRLIAYDPYIQPAR-AAQLGVRLVGLEELLRESDFISI 200
                   689********************.9*********************************************988.99********************* PP

                   -S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  98 hlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   hlp tpet +li+++ela +k+g+ ++N+aRGglvde+aL++a+ +g+++ga++Dv+++ep +++ pl+ ++nv+ tPH++
    KIR65473.1 201 HLPKTPETVGLIGEKELAIVKPGVRIVNAARGGLVDEQALADAIAEGRVGGAGVDVYAKEPCTSS-PLFAFDNVVATPHLG 280
                   ***************************************************************55.*************97 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.7   3.7e-35   9.4e-32       1     134 []       5     312 ..       5     312 .. 0.99

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 3.7e-35
                 EEEEST.CHHHHHHHHHTTEEEEEESCSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   1 vlileplreeelellkeegvevevkdellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvA 99 
                 vli e+l ++++e l + +++v+  d  ++  ll+++++ada+ivrs t+++ae ++a+p+Lkv+aragvG Dnv ++aa++rG++V+n+p+++  s+A
  KIR65473.1   5 VLIAEELAPAAIEVLAH-DFDVRHVDGTDRPALLSALSEADAVIVRSATQIDAEAIAAAPRLKVVARAGVGLDNVEVPAATARGVMVVNAPTSNIVSAA 102
                 79999************.55777777************************************************************************* PP

                 HHH................................................................................................ CS
                 xxx................................................................................................ RF
  2-Hacid_dh 100 Elt................................................................................................ 102
                 E +                                                                                                
  KIR65473.1 103 EQAvalllavarntasasaalkagewkrskytgvevqgktvgvvglgrigvlfasrmaafgtrliaydpyiqparaaqlgvrlvgleellresdfisih 201
                 *************************************************************************************************** PP

                 ...............................................................................T-BHHHHHHHHHHHHHHHHH CS
                 ...............................................................................xxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ...............................................................................aaTeeaqeniaeeaaenlva 122
                                                                                                a+T eaq +++  +a++++ 
  KIR65473.1 202 lpktpetvgligekelaivkpgvrivnaargglvdeqaladaiaegrvggagvdvyakepctssplfafdnvvatphlgASTAEAQDKAGLAVAKSVKL 300
                 *************************************************************************************************** PP

                 HHTTCCGTTBCS CS
                 xxxxxxxxxxxx RF
  2-Hacid_dh 123 flkgespanavn 134
                 +l+ge +++avn
  KIR65473.1 301 ALQGEFVPDAVN 312
                 ********9998 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.1   5.5e+03      54      63 ..      32      41 ..      23      52 .. 0.56
   2 ?    3.8   0.0      0.02        51      22      47 ..     391     413 ..     391     435 .. 0.82
   3 !   35.4   0.1   2.6e-12   6.6e-09       3      53 ..     458     506 ..     456     513 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.1
                HHHHHHHHHH CS
         ACT 54 dleevlealk 63
                d +++l al 
  KIR65473.1 32 DRPALLSALS 41
                4444444443 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.02
                 HHTTSEEEEEEEEEESTTECEEEEEE CS
         ACT  22 adrgiNidsieqrssedkvagivfvv 47 
                 a+rg+ +  ++q+++ d+    + v+
  KIR65473.1 391 AERGVEVNLASQAETTDH---PTLVT 413
                 89*************995...44444 PP

  == domain 3  score: 35.4 bits;  conditional E-value: 2.6e-12
                 EEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHH CS
         ACT   3 lrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdee 53 
                 l+++  DrPG+ + v+++l+++giNi+ +++++ e   +g++ ++++vd++
  KIR65473.1 458 LFLRYVDRPGVVGTVGTLLGEAGINIAAMQVARREA--GGETLMTLTVDQA 506
                 556788******************************..8999999999986 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.58   1.5e+03     104     130 ..      83     109 ..      75     123 .. 0.73
   2 !   14.3   0.0   1.4e-05     0.035       1     102 [.     142     242 ..     142     254 .. 0.77
   3 ?   -1.6   0.1       1.1   2.7e+03      87     115 ..     359     387 ..     334     448 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.58
                    HHHTT-EEEEEEEESHHHHHHHT-EEE CS
  NAD_binding_2 104 lkekglkfldaPVSGGeegAekGtLsi 130
                    ++++g+ +++aP S  +  Ae++   +
     KIR65473.1  83 ATARGVMVVNAPTSNIVSAAEQAVALL 109
                    678899999999999888888887433 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.4e-05
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HH CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstsspe 95 
                    ++g++GlG +G  +a+++++ g ++++y+   + + ++++ g+  +  +eel+++ d++ + +++++++  +i +  l+ +k+g  +++ +     
     KIR65473.1 142 TVGVVGLGRIGVLFASRMAAFGTRLIAYDPYIQPA-RAAQLGV-RLVGLEELLRESDFISIHLPKTPETVGLIGEkELAIVKPGVRIVNAARGGLV 235
                    58***************************764443.3444555.4556899**************9999988887766667777777766665555 PP

                    HHHHHHH CS
  NAD_binding_2  96 dtrelak 102
                    d + la+
     KIR65473.1 236 DEQALAD 242
                    5555555 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.1
                    EE-S---HHHHHHHHHHHHHTT-EEEEEE CS
  NAD_binding_2  87 idgstsspedtrelakelkekglkfldaP 115
                     d+s  + ++t+ l   + e+++++++aP
     KIR65473.1 359 HDVSVLKLAATKGLFSSVVEEQVTYVNAP 387
                    45555555555555555555555555555 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         2   5.1e+03      10      25 ..      27      42 ..      23      55 .. 0.82
   2 ?   12.6   0.0   6.3e-05      0.16      13      54 ..     462     503 ..     458     506 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2
       ACT_4 10 eveaedrkglLaditq 25
                +v ++dr+ lL+ +++
  KIR65473.1 27 HVDGTDRPALLSALSE 42
                5789999999987765 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 6.3e-05
       ACT_4  13 aedrkglLaditqviseekanivsvnaktrkkdglaeikitv 54 
                   dr+g+++ + +++ e+++ni ++++  r++ g + +++tv
  KIR65473.1 462 YVDRPGVVGTVGTLLGEAGINIAAMQVARREAGGETLMTLTV 503
                 57***************************9988888888877 PP

>> ACT_5  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.4e-05      0.14       1      50 [.     464     513 ..     464     514 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.4e-05
       ACT_5   1 dapgvLeRvlrvvrrrgFevkslnmsttedggtvrieltVesersvelLs 50 
                 d+pgv+  v  ++   g +++++++ + e gg++ ++ltV+     +lL+
  KIR65473.1 464 DRPGVVGTVGTLLGEAGINIAAMQVARREAGGETLMTLTVDQALGADLLT 513
                 6899999999******************************9988877776 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.9e-05      0.18      17      82 ..     134     198 ..     128     224 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.9e-05
                    H-S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-H.HHHHHHHCTT-EE--HHHCTTT-SEE CS
  AdoHcyase_NAD  17 tdvllaGkvavvaGyGdvGkGcaaslkglGarvivtevdP.icalqaameGfevvtleevvkkadiv 82 
                    t v + Gk++ v+G G +G   a+ + ++G+r+i    dP i   +aa  G ++v lee+++++d++
     KIR65473.1 134 TGVEVQGKTVGVVGLGRIGVLFASRMAAFGTRLIAY--DPyIQPARAAQLGVRLVGLEELLRESDFI 198
                    778899**************************9864..664677888889***********999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 3363.07
//
Query:       KIR65474.1  [L=130]
Description: hypothetical protein TK50_08695 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 894.56
//
Query:       KIR65475.1  [L=291]
Description: thiamine biosynthesis protein ApbE [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-32  112.5   0.1    6.4e-26   91.4   0.8    2.2  2  ApbE      ApbE family


Domain annotation for each model (and alignments):
>> ApbE  ApbE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   5.9e-08    0.0011      12      72 ..      85     144 ..      52     150 .. 0.80
   2 !   91.4   0.8   3.5e-30   6.4e-26     120     249 ..     151     278 ..     147     286 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5.9e-08
                 HHHHHHHHHHHHHHHC-SS-TTSHHHHHHCTSS-EEE-HH....HHHHHHHHHHHHHHTTTSS-T CS
        ApbE  12 leaaieaelerlekllsryrpdSelsrlNrakkevkvspe....laellkaaleiseltdgafdp 72 
                 l++a+ ael++++ ++  +rpdS +srl r     ++spe    la+l+ ++  + ++tdg fd 
  KIR65475.1  85 LADAV-AELRAVDLTYGPTRPDSLVSRLRRG----EISPEsyapLADLVDRCAAMRAATDGWFDA 144
                 44666.9**********************98....445444444********************7 PP

  == domain 2  score: 91.4 bits;  conditional E-value: 3.5e-30
                 ---TTTHHHHHHHHHHHHHHH.TT-EEEEEETTEEEEEC..-ECT-EEEEEE-TTS..SEEEEEEESSSEEEEEETTSSEEETEEEES-B-TTTSSB-- CS
        ApbE 120 LDlggiaKGyavdrvaellka.giksalvnlGGdiralG..pdgkpwrvgiedPra..ellavlslsddavaTSGdyeryfegkryhHiidprtgyPae 213
                  D +g+  G+av+r+a+ l+a gi+++ v  G d+++ G  p+g pwrv++ +P++  ++   l+++ +av TSG         r  H++dp+tg Pa 
  KIR65475.1 151 FDPSGLLGGWAVERAAARLRAaGIHDYAVLTGADLVVRGhaPHGGPWRVAVHHPTDprRAPLALEMTAGAVGTSGVTG------RRGHVVDPHTGEPA- 242
                 58899999********************************99999*********944555667888878******554......568***********. PP

                 -SECEEEEEESC.HHHHHHHHHHHHHHHHHHHHHHCC CS
        ApbE 214 sglasvtViads.alADalaTalfvlgeekalellek 249
                 ++l ++tVi ++ a ADa+aTal+++g++ +l++ ++
  KIR65475.1 243 DQLDAATVIGPDlAVADAYATALYAAGPA-GLAWFRN 278
                 8********9988**************87.6777774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1875.61
//
Query:       KIR65476.1  [L=343]
Description: 3-isopropylmalate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-85  286.1   0.0    4.6e-85  285.8   0.0    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase
  ------ inclusion threshold ------
      0.036   13.6   0.0       0.62    9.6   0.0    2.1  2  LPD37     Large polyvalent protein associated domain 37


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.8   0.0   5.2e-89   4.6e-85       2     324 ..       4     321 ..       3     335 .. 0.95

  Alignments for each domain:
  == domain 1  score: 285.8 bits;  conditional E-value: 5.2e-89
                 EEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHSSSS-HHHHHHHHHSSEEEEEE---CS.SSSSSHHHHHHHHHHHTTEEEEEE CS
      Iso_dh   2 iallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetgeplpeetleaikeadvvllgavgtpk.ekevrpengLlaLrkeldlfanlr 99 
                 ia++ gdgiGpevv++alkv++a+   +   +e+  +d+G+a +++tge lp+  l  +   d++llgavg p+ + +v     Ll+Lr  +d ++nlr
  KIR65476.1   4 IAVVAGDGIGPEVVAQALKVVDAVL--P--GVETTAYDLGAARYHRTGEVLPDSVLTELAGHDAILLGAVGDPTvPPGVLERGLLLKLRFAFDQYVNLR 98 
                 99**********************9..4..5899****************************************766666665789************* PP

                 EEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTTHHHH.HHH CS
      Iso_dh 100 pvkvfeklkvksplkrevveevdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkrgkkkvtlvdKanvlksse.lwr 197
                 p ++    +v+ pl +  ++evdlv+vRe t+g+Y+g     +   ++ eva +  l +++++er++r af+ A +r++ kvtlv+K nvl+ +  lw 
  KIR65476.1  99 PSRLW--PGVAGPLANVKPGEVDLVVVREGTEGLYAGAGGSLHRD-TPAEVATEESLNTRHGVERVIRDAFARASRRERRKVTLVHKTNVLTHAGsLWA 194
                 *****..79999999988999*****************9999997.699*******************************************9998*** PP

                 HHHHHHHCCTTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEET..SS-EEEEESS---CCCTTSS-S-THHHH CS
      Iso_dh 198 kiveevaeeeypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGslGllpSaslge..kkvaifEavHGsapdiagkdkaNpiavi 294
                 + +e va+ e pd+  e q vD+aam lv++p+++dV+vt+NlfGDil D aaa++G++Gl++S  +++      +fE+vHGsapdiag+++a p+a++
  KIR65476.1 195 RAFEAVAA-EHPDVATEYQHVDAAAMFLVTQPQRYDVVVTDNLFGDILTDIAAAVTGGIGLAASGCINPsgAYPSMFEPVHGSAPDIAGQGVADPVAAV 292
                 ********.************************************************************776789************************ PP

                 HHHHHHHHHTTT-HHHHHHHHHHHHHHHHH CS
      Iso_dh 295 lSaalmLryslgleeaAdkiekAvekvlea 324
                 lSaal+L   lg+ eaA+++ +Av   l++
  KIR65476.1 293 LSAALLLDQ-LGHAEAAARVTAAVGTELAN 321
                 *********.**************998876 PP

>> LPD37  Large polyvalent protein associated domain 37
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.018   1.6e+02     173     228 ..      17      70 ..      14      86 .. 0.76
   2 ?    9.6   0.0     7e-05      0.62      28      90 ..     191     253 ..     177     256 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.018
       LPD37 173 lktsyanvkklvpeikdvtydfakarfrerdgkpvtdetlkslveearkertarig 228
                 +   ++ v + +p ++   yd+ +ar+ +r+g+ + d  l++l+  + +    ++g
  KIR65476.1  17 VAQALKVVDAVLPGVETTAYDLGAARY-HRTGEVLPDSVLTELAG-HDAILLGAVG 70 
                 55667888899999************9.9***********99994.4444445555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 7e-05
       LPD37  28 aeidptlsvvadakaedelereeaevdrawvvttkkGkqavvienkngevwidvsnlkegegG 90 
                 + ++ ++++va ++    +e+++ +++  + vt +++ ++vv++n  g++  d+++  +g+ G
  KIR65476.1 191 SLWARAFEAVAAEHPDVATEYQHVDAAAMFLVTQPQRYDVVVTDNLFGDILTDIAAAVTGGIG 253
                 56788888888888888889***********************************99999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2449.55
//
Query:       KIR65477.1  [L=364]
Description: branched-chain amino acid aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-34  118.7   0.0      4e-34  118.4   0.0    1.1  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.0   2.2e-38     4e-34       2     222 ..      77     320 ..      76     321 .. 0.94

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 2.2e-38
  Aminotran_4   2 lfEtmrvy...ngei..ffldeHleRLrksaellglelpfdeeelrkileelleannsen.......grlrllvsrgggglgaatsepsvavyvsalp 87 
                  +fE++++y   +g+i  f+ +++++R+  sa+++ ++++++ e +   l+ l++ ++++        ++lr+++++ +  lg   ++++++ +v+a+p
   KIR65477.1  77 IFEGLKAYrlaDGSItmFRPEANAARFVDSARRM-AMPELPPELFVDSLRRLVDIDRDWIpegdgasLYLRPFMIASEVFLG-VRPSNEYLYVVIASP 172
                  7*****99999*****888************776.6****************************99999*********9999.999999999999999 PP

  Aminotran_4  88 pgpeseke...lplvtssdvrrdapsplpgaKtln.yldnvlarreakergadevllvd..edgnvtEgstsNv.fivkggelitPplssgiLpGitr 178
                   g++       +++++s d++r ap  +  aK    y+ +++a++ea e+g+d+v+++d  e+++v E + +Nv f+  +++l+tPpl ++iLpGitr
   KIR65477.1 173 AGSYFSGGvkpVTVWVSPDYTRAAPGGTGAAKCGGnYAASLAAQAEAIEAGCDQVVFLDavERRYVDELGGMNVfFVYDDDTLVTPPLTGTILPGITR 270
                  9999999999*9********************8766***********************555677*********88888******************* PP

  Aminotran_4 179 rallelakalgleveereitlkdle......eadeafltntlrgvlpvrs 222
                  +all la+++g  veer+++ +d e      +  eaf ++t++ ++p+ +
   KIR65477.1 271 DALLTLAAEAGHRVEERPVSFADWEadaasgRLREAFACGTAAVITPIGR 320
                  *************************9999999***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 2329.62
//
Query:       KIR65478.1  [L=152]
Description: hypothetical protein TK50_08720 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1024.25
//
Query:       KIR65479.1  [L=176]
Description: alkyl hydroperoxide reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-14   53.0   2.7    2.6e-14   53.0   2.7    2.0  2  CMD       Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.6      0.17   3.1e+03      56      75 ..      51      70 ..      34      81 .. 0.51
   2 !   53.0   2.7   1.5e-18   2.6e-14       5      83 ..      98     175 ..      94     176 .] 0.94

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.17
                -HHHHHHHHHHHHHHHSHHH CS
         CMD 56 teeeiaevlaqaaayagwpa 75
                   eia+ +a    + +++a
  KIR65479.1 51 VLREIAAEAATHLTAEAVEA 70
                44444433333333333333 PP

  == domain 2  score: 53.0 bits;  conditional E-value: 1.5e-18
                 HHHHHHHHHHCCGSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHHH CS
         CMD   5 raltalreallareggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaaraAlaaa 83 
                  + ++lr+ ++ar+g +++ + eL  lavsa++gc  C+ +H + ++ aG t+e++ e l++aa+ ++ ++a++A aa+
  KIR65479.1  98 SMPARLRMQIIARPG-VEKGDFELWCLAVSAITGCGVCLESHEKTLRAAGFTREQVHEGLRIAAVVHAAAVALDAQAAL 175
                 6678999*****877.*********************************************************998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1380.65
//
Query:       KIR65480.1  [L=186]
Description: alkyl hydroperoxide reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-33  113.8   0.0    5.4e-33  113.5   0.0    1.1  1  AhpC-TSA    AhpC/TSA family
    3.9e-15   55.8   0.0    4.5e-15   55.6   0.0    1.1  1  Redoxin     Redoxin
     0.0033   17.3   0.0     0.0066   16.4   0.0    1.4  1  SCO1-SenC   SCO1/SenC
  ------ inclusion threshold ------
      0.027   14.3   0.0        0.1   12.5   0.1    1.9  2  1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.0   1.2e-36   5.4e-33       1     123 [.       4     136 ..       4     137 .. 0.97

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 1.2e-36
                 TTSB----EEE.......STTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.....SSEEEE CS
    AhpC-TSA   1 vgdkapdfelk.......nadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekes....lnfplls 88 
                 vgd++p+ el+       +  +e+++ + y+gk+ v+ff+pkd+++ C+te+ ++ +l+ ef++r+++v+gvsvd+++ h ++ +++     l+fp+ls
  KIR65480.1   4 VGDRFPEYELTacvsldaDRAFESINHKSYEGKWRVVFFWPKDFTFICPTEIAEFGRLNGEFADRDAQVLGVSVDNEFVHYAWRKDHPdlreLPFPMLS 102
                 79*********99999777779***************************************************************************** PP

                 -TTSHHHHHTT-EETTTTECSCEEEEE-TTSBEEE CS
    AhpC-TSA  89 Deegkvakaygvlkeekglalratfvidkegkiry 123
                 D ++++ +a gvl  + g+a+ratf++d++  i++
  KIR65480.1 103 DIKRELTDACGVLGAD-GVAQRATFIVDPDNEIQF 136
                 *************887.***************996 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0     1e-18   4.5e-15       2     146 ..       4     154 ..       3     155 .. 0.88

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 1e-18
                 TTSBB---E......CCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH.....TT-TSEE CS
     Redoxin   2 agdkaPdft......lplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgk.....eglkfpv 89 
                 +gd++P+ +      l +a+   +s++ ++++gk  vv+f+p  f+  C +e+ ++  l+ ++++++ +v++v++dn +fv  +w k      +l+fp+
  KIR65480.1   4 VGDRFPEYEltacvsL-DADRAFESINHKSYEGKWRVVFFWPKDFTFICPTEIAEFGRLNGEFADRDAQVLGVSVDN-EFVHYAWRKdhpdlRELPFPM 100
                 7999998887788855.77899************************************************9998765.7999999999****999**** PP

                 EE-TTSHHHHHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSCHT.STTSHHHH CS
     Redoxin  90 lsDgsaaftkalGlrleedaseglrtpryavidedgkvvylevepepet.eesnaeav 146
                 lsD + ++t a G+      ++g++ ++++++d d+ +    v + +++ ++s++  v
  KIR65480.1 101 LSDIKRELTDACGVL----GADGVAQRATFIVDPDNEIQFAMVTAGSVGrNVSEVLRV 154
                 *************77....4567999************99888887776666666655 PP

>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.5e-06    0.0066      12      68 ..      26      80 ..      21      81 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.5e-06
   SCO1-SenC 12 eavteedlegkpslvffgFthCpdvCpttlanmaevldalgeeaekvqplfiTvDPe 68
                e+++ +++egk+ +vff     + +Cpt++a+  ++  +++++  + q+l ++vD e
  KIR65480.1 26 ESINHKSYEGKWRVVFFWPKDFTFICPTEIAEFGRLNGEFADR--DAQVLGVSVDNE 80
                678999************9999*******************99..999999999976 PP

>> 1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.61   2.7e+03      26      36 ..      29      38 ..      27      39 .. 0.83
   2 ?   12.5   0.1   2.2e-05       0.1       8      23 ..     160     175 ..     157     179 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.61
                --SSHHHHHHH CS
  1-cysPrx_C 26 Ppateedavkr 36
                +++++e +++r
  KIR65480.1 29 NHKSYE-GKWR 38
                6999**.9998 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2.2e-05
                 HT-BB-TTT.TBT-EE CS
  1-cysPrx_C   8 hgvatPAnWkpGdkvi 23 
                 + + +P+nW++G +++
  KIR65480.1 160 TDELCPCNWNKGGDTL 175
                 5789*******98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1409.12
//
Query:       KIR65481.1  [L=527]
Description: transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-40  139.2   1.5    2.6e-40  138.6   1.5    1.2  1  HMGL-like   HMGL-like
    6.9e-28   97.2   0.0    1.3e-27   96.3   0.0    1.5  1  LeuA_dimer  LeuA allosteric (dimerisation) domain


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   1.5   2.9e-44   2.6e-40       2     245 ..       3     256 ..       2     283 .. 0.91

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 2.9e-44
                 -EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B....--EE-SSHHHHHHH....HH....TT-SEEE CS
   HMGL-like   2 vkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkar..ilalvrarekdikaa....vealkgagakrvh 94 
                 +++ dttLRDG q ++ ++sv +kla+a+ Lde+gv  iE g p a ++d+e+ r +  ++  ++  ++a    r+  +++a    v+al  a+   v 
  KIR65481.1   3 FQLYDTTLRDGAQREGLTYSVVDKLAVARLLDEFGVGFIEGGWPGAVPKDTEFFRRARTELDLKHalLVAFGATRKAGVAVAddpqVRALLDAQTPAVA 101
                 6899*****************************************************99876554458888999999999885555678999******* PP

                 EEEES-HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-ETTT-BTTTB...S--HHHHHHHHHHHHHHT-SEEEEEETTS---HHHHHHHHHHHHHHS-. CS
   HMGL-like  95 vfiatselhlkaklkkdreevakkaeeavkaarslgkdvelsledas...rtdleflaevveaaeeaGatriniaDtvGvltPneaaelisalkervk. 189
                 ++  +   h++  l+ +++e ++++++ v+     g +v +  e +    r+d+++ aevv++a +aGa  + + Dt G + P+ + + i+ l +r+  
  KIR65481.1 102 LVAKADLRHVERALRTTAQENLAMIRDTVRHLVAEGRRVFVDGEHFFdgyRHDPAYGAEVVQTALAAGAEVMVLCDTNGGMLPSHVSAAIADLTARTGv 200
                 **********************99999999999999997776665432229************************************************ PP

                 .GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHH CS
   HMGL-like 190 dkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalea 245
                 d + l +H+ nd+ +Avant+aAveaG+++v gt nG Ger Gna++ +++a+l+ 
  KIR65481.1 201 DPARLGMHAQNDTACAVANTIAAVEAGVRHVQGTANGYGERPGNADIFAVAANLQL 256
                 *****************************************************975 PP

>> LeuA_dimer  LeuA allosteric (dimerisation) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.0   1.5e-31   1.3e-27       1     131 [.     377     520 ..     377     522 .. 0.91

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 1.5e-31
                 XXXXXXXXXXXXXXXXXXX..--EEEEEEEEEEETT....CEEEEEEEEEE.TTEEEEEEEE-SSHHHHHHHHHHHHHHH......T-EEEEEEEE--T CS
  LeuA_dimer   1 evtdedlealvkdelleae..erlkleklqvssged....elstatvklevkdgeekeasaeGnGpvdAllnAlrkalgv......dikLldYsvhait 87 
                 e +d+++e lv+ el +a   +++ le+++v  +++     +s+atvk++v  ge+  a+aeGnGpv+Al++Alr  l++      d++L dY+v++++
  KIR65481.1 377 EAADASFELLVRSELPDAApvRPFALESYRVLVEHRedgsVVSEATVKIRV-RGERLIATAEGNGPVNALDEALRVGLSRhypelrDFELADYKVRILE 474
                 5689***********994446************999999999*********.99999*******************999988877778*********** PP

                 T-TT--EEEEEEEE--GGGE..EEEEEEESSHHHHHHHHHHHHHHH CS
  LeuA_dimer  88 egtdaqaevrVelevddgkk..vsgvGvdsdiveASlkAlisalnr 131
                 + +++ a +rV +e+ dg    +++vGv++++veAS++Al++al +
  KIR65481.1 475 GSHGTGAVTRVLVETADGAGrdWTTVGVHPNVVEASWHALVDALTY 520
                 **************97755555*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3908.91
//
Query:       KIR65482.1  [L=176]
Description: hypothetical protein TK50_08745 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.092   12.0   0.0       0.11   11.8   0.0    1.1  1  Candida_ALS_N  Cell-wall agglutinin N-terminal ligand-sugar b


Domain annotation for each model (and alignments):
>> Candida_ALS_N  Cell-wall agglutinin N-terminal ligand-sugar binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     6e-06      0.11      71     119 ..      76     121 ..      59     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6e-06
  Candida_ALS_N  71 tsasGtisfplvFnaGgsassvdleaakcFkaGtntvtfsdgdkklstt 119
                    + ++G+ sf +v +aG    s d  +a+ +  G+ +v f+     l+  
     KIR65482.1  76 SYVNGSTSFAVVSSAGTLLRSRDAVSATKYGPGQYQVIFNRS---LTSA 121
                    5799************************************96...5443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1301.27
//
Query:       KIR65483.1  [L=349]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-61  203.4   0.0    2.1e-60  202.3   0.0    1.5  1  AAA_3            ATPase family associated with various cellul
    5.2e-18   64.6   6.0    1.7e-17   63.0   6.0    1.9  1  AAA_lid_2        AAA lid domain
    1.3e-13   51.2   0.0    2.1e-13   50.4   0.0    1.4  1  AAA_5            AAA domain (dynein-related subfamily)
     0.0012   19.2   0.0     0.0028   18.1   0.0    1.6  1  AAA              ATPase family associated with various cellul
     0.0024   17.3   0.7      0.038   13.4   0.1    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0035   17.0   0.1      0.038   13.7   0.0    2.3  2  Sigma54_activat  Sigma-54 interaction domain
  ------ inclusion threshold ------
      0.016   14.3   0.0      0.026   13.6   0.0    1.3  1  MCM              MCM P-loop domain
      0.028   14.2   0.1       0.29   10.9   0.1    2.2  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
       0.04   14.3   0.9       0.09   13.2   0.9    1.9  1  AAA_16           AAA ATPase domain


Domain annotation for each model (and alignments):
>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.3   0.0     1e-63   2.1e-60       1     131 []      54     184 ..      54     184 .. 1.00

  Alignments for each domain:
  == domain 1  score: 202.3 bits;  conditional E-value: 1e-63
       AAA_3   1 hvllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanllladeinrappktqsalleameerqvtvegethk 99 
                 h+llegvPG+aktl++++la++++ +f+riqftpdl+Psdi+Gt+++++++++f+++ Gp++anl+ladeinrap+k+qsalleam+erqv+++g++++
  KIR65483.1  54 HCLLEGVPGVAKTLAAQTLATVVGGTFSRIQFTPDLVPSDIVGTRIYRASKESFDVELGPIMANLVLADEINRAPAKVQSALLEAMAERQVSIGGRAFP 152
                 9************************************************************************************************** PP

       AAA_3 100 lpepflvlatqnPieqeGtyplpeaqldrfll 131
                 +p+pflvlatqnPie+eG+y+lpeaq drfl+
  KIR65483.1 153 VPTPFLVLATQNPIESEGVYQLPEAQRDRFLM 184
                 ******************************98 PP

>> AAA_lid_2  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   6.0   8.5e-21   1.7e-17       7      72 ..     259     325 ..     256     326 .. 0.94

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 8.5e-21
   AAA_lid_2   7 laielgvsgrRadlallraArAlAalegrdyVtpeDvkeaaplVLaHRlr..repeaegetteeivee 72 
                 + +++g+s+r a+l l+ aArA A+l+grd+V+peDv+e+a  VLaHRl+   ++ a+g+ +e++v++
  KIR65483.1 259 PLLAYGASPR-ATLGLVAAARAQALLRGRDHVLPEDVRELAVDVLAHRLVlsFDAVADGVAAEAVVHR 325
                 5689******.****************************************99999999999999875 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   1.1e-16   2.1e-13       1     138 []      54     182 ..      54     182 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 1.1e-16
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--...........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik..ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllle 97 
                 + lL G pG++K+  a+ la +++ ++  +q+t d+ ++d++g r ++  ++    + +p++     + +++ DE++ra+ +v+++Ll  + er+++  
  KIR65483.1  54 HCLLEGVPGVAKTLAAQTLATVVGGTFSRIQFTPDLVPSDIVGTRIYRasKESFDVELGPIM-----ANLVLADEINRAPAKVQSALLEAMAERQVS-- 145
                 579********************************************944444445677777.....99****************************.. PP

                 -SSSEEE---......-EEEEEESS--..-TT-TTHHHHTT- CS
       AAA_5  98 eggelvkaknddllerfrviatanpld.rslnelspalrsRf 138
                  gg+   ++ +     f v+at np +  ++ +l +a r+Rf
  KIR65483.1 146 IGGRAFPVPTP-----FLVLATQNPIEsEGVYQLPEAQRDRF 182
                 55555666665.....***********999999999999999 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.4e-06    0.0028       2     131 ..      56     189 ..      55     190 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.4e-06
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEET.TTCS.SSSTTHHHHHHHHHHHHHHHTS..TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHT CS
         AAA   2 llyGppGtGKTllakavakelgvefleisg.sell.skyvgesekkirelfkeakeka..kpsilfiDEidalaksrsgseseeeervvnqLlteldgv 96 
                 ll G pG+ KTl+a+ +a+ +g +f +i+  ++l+ s++vg +  + ++   +++         ++ DEi +   +           v+++Ll+++ + 
  KIR65483.1  56 LLEGVPGVAKTLAAQTLATVVGGTFSRIQFtPDLVpSDIVGTRIYRASKESFDVEL-GpiMANLVLADEINRAPAK-----------VQSALLEAMAER 142
                 899**********************9999637888777777665444433333333.24555999*****999544...........5*********** PP

                 TTS........SSTEEEEEEESS.....GGGSTHHHHSTTSSEEEETT CS
         AAA  97 kkk........eskvivigatnr.....pdkldpallrgRfdrkieie 131
                 + +          +++v+++ n      + +l++a + +Rf +ki ++
  KIR65483.1 143 QVSiggrafpvPTPFLVLATQNPiesegVYQLPEAQR-DRFLMKIVVD 189
                 *********9977688888888766666678899988.9998888765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   1.9e-05     0.038       5      46 ..      35      76 ..      32      84 .. 0.78
   2 ?    2.0   0.0     0.058   1.2e+02     110     161 ..     119     168 ..     113     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
  Mg_chelatase  5 vkGqeeak.raleiaaaGgHnlllvGppGsGKtmlakrlpsll 46
                  ++Gq++   r l+  +aGgH  ll G pG  Kt+ a+ l++++
    KIR65483.1 35 IVGQDRLVeRLLTALVAGGH-CLLEGVPGVAKTLAAQTLATVV 76
                  67887765055555577777.578***************9986 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.058
  Mg_chelatase 110 LfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpc 161
                   ++ DE+    +kv  +L e + +++v+i      +  p+ f ++a+ Np  +
    KIR65483.1 119 VLADEINRAPAKVQSALLEAMAERQVSIGGR--AFPVPTPFLVLATQNPIES 168
                   4569**********************99754..5666999999999999765 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.9e-05     0.038      94     146 ..     116     167 ..      36     173 .. 0.62
   2 ?   -3.8   0.0       4.7   9.3e+03     116     141 ..     221     246 ..     219     248 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.9e-05
                      TSEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HH CS
  Sigma54_activat  94 gGtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedle 146
                         ++ Dei++ p+++Q+ Ll+++ e++v+  G   ++++ + ++ at++ +e
       KIR65483.1 116 ANLVLADEINRAPAKVQSALLEAMAERQVSIGGRAFPVPTPF-LVLATQNPIE 167
                      456778**********************98666666666665.5556666655 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.7
                      HHHHSEEESBTSSSEEE--EEEEEEE CS
  Sigma54_activat 116 vlqegevervGsskeikvdvriiaat 141
                      +lq++      +++  +  vr+i at
       KIR65483.1 221 ALQRRAGDVFVHHAIAEYVVRLILAT 246
                      55555555555556667778888887 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.3e-05     0.026     107     176 ..     104     168 ..      35     184 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
                 SSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSS CS
         MCM 107 tgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkag 176
                 ++ f +e G ++     +++ De+++   + +sal+Eam + ++si  +G    +++   vla  np+++
  KIR65483.1 104 KESFDVELGPIMAN---LVLADEINRAPAKVQSALLEAMAERQVSI--GGRAFPVPTPFLVLATQNPIES 168
                 44566666666543...7899************************9..5666899999999999999854 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00015      0.29      34     115 ..      53     146 ..      35     150 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvkl.kitsgPvlekagdlaall..........tnlee..kdvlfideihrlsraveevlysamedfrldi 115
                  h+ll G PG+ kt  a+ +a+ +g ++ +i  +P l  ++d+++            ++l +   ++++ dei r   +v+  l  am + ++ i
  KIR65483.1  53 GHCLLEGVPGVAKTLAAQTLATVVGGTFsRIQFTPDLV-PSDIVGTRiyraskesfdVELGPimANLVLADEINRAPAKVQSALLEAMAERQVSI 146
                 69************999999999987763555666664.44554422011111000012221114567788888888888888888888877765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.9   4.5e-05      0.09       3      62 ..      36      87 ..      34     315 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.5e-05
      AAA_16  3 vGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdq 62
                vG ++ +e+Ll+al    +g  + +ll G +Gv K+  +++l++ + ++   f r +++ 
  KIR65483.1 36 VGQDRLVERLLTALV---AG--GHCLLEGVPGVAKTLAAQTLATVVGGT---FSRIQFTP 87
                789999999988886...44..79******************9765554...53333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2558.90
//
Query:       KIR65484.1  [L=319]
Description: von Willebrand factor A [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-19   69.1   0.0    9.2e-19   68.1   0.0    1.5  1  VWA_2      von Willebrand factor type A domain
    2.1e-17   63.9   0.0    2.9e-17   63.4   0.0    1.1  1  VWA        von Willebrand factor type A domain
    1.1e-08   35.3   7.4      2e-08   34.5   7.4    1.4  1  BatA       Aerotolerance regulator N-terminal
      0.008   15.4   2.6      0.041   13.1   2.6    1.9  1  DUF1194    Protein of unknown function (DUF1194)
  ------ inclusion threshold ------
       0.01   15.9   0.1         11    6.2   0.0    3.0  3  SPC12      Microsomal signal peptidase 12 kDa subunit (SPC12)
      0.013   15.2   0.4      0.086   12.6   0.4    2.3  1  Neurensin  Neurensin
      0.021   14.8   0.0      0.045   13.7   0.0    1.7  1  VWA_3      von Willebrand factor type A domain
       0.12   12.7   0.2       0.47   10.7   0.1    1.8  2  DUF3522    Protein of unknown function (DUF3522)
        1.6    8.4   5.0       0.56    9.8   2.0    1.8  2  DUF4131    Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   4.6e-22   9.2e-19       1     106 [.      88     202 ..      88     203 .. 0.92

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 4.6e-22
       VWA_2   1 lvfvlDtSgSmrngdygptrleaakdaveallkslpgd.rvglvtfsdgpevlipltkdkakilnalrnleak...gggtnlaaaLqlarkalkkrr.. 93 
                 +++ +D+S Sm ++d++p rl+aakda++++++ lp+  +vglv+f++++ vl+p+ +d++++ + +++l +     +gt +++a+++   a+++    
  KIR65484.1  88 VMVAVDVSTSMLASDVEPDRLSAAKDAARRFVDGLPEEfNVGLVAFAGSAAVLVPPGTDREALHDGIERLAEGstgVQGTAIGEAINTSLGAVRALDsq 186
                 799*********************************777********************************99998899********999888544444 PP

       VWA_2  94 ...kgekrvivlitDg 106
                       +++i+l++Dg
  KIR65484.1 187 aakDLPPARIILLSDG 202
                 567899*********9 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   1.5e-20   2.9e-17       2     174 ..      88     277 ..      88     278 .. 0.84

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 1.5e-20
                 EEEEEE-STTS.....CHHHHHHHHHHHHHHHHHHTBTTTTEEEEEEEESSSEEEEEETTSHCHHHHHHHHHHTG...SGGGGSSC-HHHHHHHHHHHH CS
         VWA   2 ivfvlDgSgsm.....geenfekvkefikklveklevgpegtrvglvqfssevktefslndysskeellsalnnl...kysgggttntgkalkyalekl 92 
                 +++++D+S sm     +++++  +k+++ ++v+ l    e  +vglv f++++ + ++  +++  e+l++ +++l   ++  +gt+ +g+a++  l  +
  KIR65484.1  88 VMVAVDVSTSMlasdvEPDRLSAAKDAARRFVDGLP---EEFNVGLVAFAGSAAVLVPPGTDR--EALHDGIERLaegSTGVQGTA-IGEAINTSLGAV 180
                 6899*******6666666666699999999999999...**********************87..788888888755467777777.888888766644 PP

                 HHHHGT.SSTTSEEEEEEEESS--CSS.HTHHHHHHHHGCTEEEEEEEE..............SSSHHHHHHHHHSSSSCHHCEEEESSHHHHHHHHH CS
         VWA  93 fkssag.aRenakkviilltdGksndg.dpkeaaneakeqgikvfavGv..............gnadekelLnkiasepgeghvftvtdfeeleelfe 174
                     +  a++  +  iill+dG +++g dp eaa+ea ++++ v+++ +              +  ++ + L+  a ++g g + ++t+ eel+ +++
  KIR65484.1 181 RALDSQaAKDLPPARIILLSDGANTSGmDPMEAAAEAVDAKVPVHTISFgtpsgfvdrggrpiQVPVDGQTLKAVADSTG-GGFHEATSREELRAVYD 277
                 443333447899**************99***********************************77777777******999.99999999998887775 PP

>> BatA  Aerotolerance regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   7.4   9.9e-12     2e-08       1      77 []       1      75 [.       1      75 [. 0.91

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 9.9e-12
        BatA  1 MlpFlnPllLlallllplpiillyllkrrpqev..vfsslrlleevekdeealqrlkknllllLrllalallvlalArP 77
                M ++++Pl L++ll ++++ + ++l +rr  +   +f +lrll +v + + a   ++++++  L l++lallv+++ArP
  KIR65484.1  1 M-TWQSPLRLWLLLGVAALAVGYLLAQRRHSRYavRFTNLRLLDRVAPHRPA---WRRHVPAGLFLAMLALLVVGFARP 75
                8.89**************66666666666666689*****************...***********************9 PP

>> DUF1194  Protein of unknown function (DUF1194)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   2.6   2.1e-05     0.041       7     151 ..      89     226 ..      84     235 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.1e-05
     DUF1194   7 vLavDvSgSvdeeElrlQreGyaaAlrdpevleallagalgriavtyveWsgeseqevvvdWtviesaedaeafaaklaaapraaarrtaigeAlefaa 105
                 ++avDvS+S+ +++++  r    aA   ++ ++ + +g  ++ +v +v  +g+   +v+v+    +++e++++ +++la+ ++   + taigeA++++ 
  KIR65484.1  89 MVAVDVSTSMLASDVEPDRLS--AA---KDAARRFVDGLPEEFNVGLVAFAGS--AAVLVPP--GTDREALHDGIERLAEGST-GVQGTAIGEAINTSL 177
                 566666666666666655532..22...3445555566666666666666663..3444443..3466666666777765554.4456*********99 PP

     DUF1194 106 allaenpveglr.....rviDvSGDGpnneglepvtaardaaeakgvting 151
                  ++++ + ++++     r+i +S DG+n++g++p+ +a ++a+ ++v +  
  KIR65484.1 178 GAVRALDSQAAKdlppaRIILLS-DGANTSGMDPM-EAAAEAVDAKVPVHT 226
                 88888877777633333777666.***********.777777777776665 PP

>> SPC12  Microsomal signal peptidase 12 kDa subunit (SPC12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0066        13      18      62 ..      11      55 ..       7      58 .. 0.90
   2 ?   -1.3   0.1       1.2   2.4e+03      40      55 ..     128     143 ..     125     143 .. 0.83
   3 ?    6.2   0.0    0.0053        11      23      61 ..     279     317 ..     274     319 .] 0.89

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0066
       SPC12 18 vlsaviafivGyitqdlkltlyillagvvltllvvvPpWpfYnrn 62
                +l +v+a++vGy++ + +   y++ ++ +  l  v P+ p ++r+
  KIR65484.1 11 LLLGVAALAVGYLLAQRRHSRYAVRFTNLRLLDRVAPHRPAWRRH 55
                6789******************99999999999999999999998 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.2
       SPC12  40 illagvvltllvvvPp 55 
                 ++l++++ +++v vPp
  KIR65484.1 128 VGLVAFAGSAAVLVPP 143
                 6788999999999997 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0053
       SPC12  23 iafivGyitqdlkltlyillagvvltllvvvPpWpfYnr 61 
                 i+  vGy tq+ ++   ++++g+vl++ +   +  ++ r
  KIR65484.1 279 IGTSVGYRTQRQDVSARFIGLGLVLAMGAAAGSMRWFSR 317
                 6889**********************9998888888876 PP

>> Neurensin  Neurensin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   4.3e-05     0.086      50      83 ..       9      44 ..       8     144 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.3e-05
   Neurensin 50 lvlllGvtallvGylvprrlelv..ksegelvvvDk 83
                l lllGv+al+vGyl+ +r  +       +l+++D+
  KIR65484.1  9 LWLLLGVAALAVGYLLAQRRHSRyaVRFTNLRLLDR 44
                679*************99765432235566666665 PP

>> VWA_3  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.3e-05     0.045       3     135 ..      88     231 ..      86     262 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.3e-05
       VWA_3   3 vvivvDvsssmsaen......klvkdaLsvalrqLptndkiavllfgtkprplf.pg..sravsaaelqealqkikelelslgasnlegaLk..ealrq 90 
                 v ++vDvs sm a+        ++kda + ++ +Lp++  + +++f  ++  l  pg    a+++   + a+ ++  +     ++    +L   +al++
  KIR65484.1  88 VMVAVDVSTSMLASDvepdrlSAAKDAARRFVDGLPEEFNVGLVAFAGSAAVLVpPGtdREALHDGIERLAEGSTGVQGT-AIGEAINTSLGavRALDS 185
                 66788999998777677788888999999999999999999888887776767734443344444444444444444333.444444444442244443 PP

       VWA_3  91 p.akpgevrsvilltDgssaqgeervsdlisrarekirfhalglgs 135
                 + ak   +  +ill+Dg+ ++g + ++++ ++  +k+++h++ +g 
  KIR65484.1 186 QaAKDLPPARIILLSDGANTSGMDPMEAAAEAVDAKVPVHTISFGT 231
                 3599999************9999999999999999*********96 PP

>> DUF3522  Protein of unknown function (DUF3522)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00024      0.47     108     174 ..       6      74 ..       1      81 [. 0.69
   2 ?   -0.6   0.0      0.71   1.4e+03     144     167 ..     285     308 ..     269     316 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00024
     DUF3522 108 rwslantiipilvgllillvswliecvkkrklypsllr........rrlkrlnlqqllpgllllalAlfllglde 174
                 + +l+ +++++++++  ll+       ++ + y  +++           ++ +++++ +gl+l++lAl+++g+  
  KIR65484.1   6 PLRLWLLLGVAALAVGYLLAQR-----RHSR-YAVRFTnlrlldrvAPHRPAWRRHVPAGLFLAMLALLVVGFAR 74 
                 5566666666666666666665.....2222.32222246689988778889****************9999875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.71
     DUF3522 144 lrrrlkrlnlqqllpgllllalAl 167
                 +r++++ +  +++  gl+l++ A+
  KIR65484.1 285 YRTQRQDVSARFIGLGLVLAMGAA 308
                 4588999999*******9999887 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.0   0.00028      0.56       4      48 ..       6      73 ..       3      96 .. 0.68
   2 ?   -2.6   0.1       1.9   3.7e+03      32      45 ..     295     308 ..     284     316 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00028
     DUF4131  4 plalvllalllllllllllllrr......................rprrrv.llllllllllallgfa 48
                pl l+ll+ +++l++  ll +rr                      ++rr+v ++l+l+ l+l+++gfa
  KIR65484.1  6 PLRLWLLLGVAALAVGYLLAQRRhsryavrftnlrlldrvaphrpAWRRHVpAGLFLAMLALLVVGFA 73
                67788888888888888887777899999999999999999885533333344444444444444444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.9
     DUF4131  32 vllllllllllall 45 
                 ++++l+l+l+++++
  KIR65484.1 295 RFIGLGLVLAMGAA 308
                 34444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2378.28
//
Query:       KIR65485.1  [L=287]
Description: peptidase S1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-34  118.8   4.1    5.8e-34  118.2   4.1    1.3  1  Trypsin_2      Trypsin-like peptidase domain
    5.4e-11   42.7   0.1    8.8e-11   42.0   0.1    1.2  1  Trypsin        Trypsin
     0.0049   16.1   2.7       0.58    9.3   0.6    2.3  2  Peptidase_S32  Equine arteritis virus serine endopeptidase S3
  ------ inclusion threshold ------
      0.011   14.4   0.2      0.015   14.0   0.2    1.1  1  Peptidase_S46  Peptidase S46
      0.028   14.2   0.1      0.048   13.4   0.1    1.4  1  Peptidase_S29  Hepatitis C virus NS3 protease
       0.19   11.6   0.3       0.32   10.8   0.3    1.3  1  Peptidase_S7   Peptidase S7, Flavivirus NS3 serine protease


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   4.1   1.9e-37   5.8e-34       1     150 []     114     251 ..     114     251 .. 0.99

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 1.9e-37
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggeks 99 
                 GsGf ++++ +++Tn H++++ +g+av       ++  +dgr+++a+vv+++p++DlA+l+v   ++agl+plpl+   a+++gepv +vG plg  + 
  KIR65485.1 114 GSGFAIDDQQHLITNDHILAKGGGGAV-------TVELPDGRRFAAEVVGREPGSDLAVLRV--PPDAGLAPLPLAKPGATRVGEPVLAVGSPLGLAG- 202
                 9**************************.......99**************************..**********************************. PP

   Trypsin_2 100 gsvssGivsgvvesesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                  +v++Givs++++ + + ++++++ +qtda+++pG+SGGpl++++G+vvG+
  KIR65485.1 203 -TVTAGIVSALDR-QVRLGTNRHRAVQTDASINPGNSGGPLVNARGEVVGV 251
                 .9***********.************************************8 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.1   2.9e-14   8.8e-11      13     218 ..      97     276 ..      89     279 .. 0.74

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 2.9e-14
                 TTEEEEEETTC...EEEEEEEEEETT.EEEEEGGGTTT..GGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBH CS
     Trypsin  13 pwqvslsvksg...khlCgGslisen.wvlTAaHCvsn..asdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvr 105
                 p +vs+ v++    + + +G+ i+++  ++T+ H++ +          g+ +++  +g  +++  e v    + +p     D+a+l++  +        
  KIR65485.1  97 PGVVSVLVGGAagsSATGSGFAIDDQqHLITNDHILAKggG-------GAVTVELPDG--RRFAAEVV----GREPG---SDLAVLRVPPD----AGLA 175
                 555556665556555667789998887999******98322.......4435567777..56666663....34555...5********99....8888 PP

                 CCBBCSTTHTTSTTTEEEEEESSBSSTSSBSSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEE...SS CS
     Trypsin 106 piclpaassslpvgttclvsGwgrtkekgksdtlqevevpvvsretcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswg...kg 201
                 p+ l++ ++   vg+ +l++G +     g   t++ + v++++r+    +     + + ++++a     ++++G+SGGPlv+  ge+vG++++    +g
  KIR65485.1 176 PLPLAKPGA-TRVGEPVLAVGSPLG-LAG---TVTAGIVSALDRQVRLGT----NRHRAVQTDA-----SINPGNSGGPLVNARGEVVGVNTAIatiDG 260
                 888888444.789999999999995.444...899999999999744442....578999****.....9**********************9965455 PP

                 SSCTTSEEEEEEGGGGH CS
     Trypsin 202 cakgnrpgvytkvssyl 218
                  ++ + +g+++++ +++
  KIR65485.1 261 SGSIG-IGFAIPIEQVQ 276
                 55553.79999998876 PP

>> Peptidase_S32  Equine arteritis virus serine endopeptidase S32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0012       3.7     109     137 ..     104     135 ..      87     177 .. 0.75
   2 !    9.3   0.6    0.0002      0.58     206     234 ..     233     262 ..     226     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0012
                    ESSSEE...EEEEEECTTEEEEEEEHHHH-TS CS
  Peptidase_S32 109 vGsslG...sGgvftidgevvvvtashvlgdn 137
                    vG + G   +G+ f+id+++  +t  h+l+++
     KIR65485.1 104 VGGAAGssaTGSGFAIDDQQHLITNDHILAKG 135
                    3444431116999***************9843 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0002
                    -GGGTT-EEEETTE.EEEEEEEEET.TTEE CS
  Peptidase_S32 206 kcGDsGspvvdedgelvGvhtGsnk.kGsg 234
                    ++G+sG p+v+  ge+vGv t   +  Gsg
     KIR65485.1 233 NPGNSGGPLVNARGEVVGVNTAIATiDGSG 262
                    79******************9754325555 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2     5e-06     0.015     627     651 ..     228     252 ..     220     257 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5e-06
                    ES----TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 627 stnDitGGNSGSPvlngkgelvGla 651
                    +++ i  GNSG P++n++ge+vG++
     KIR65485.1 228 TDASINPGNSGGPLVNARGEVVGVN 252
                    7788999****************97 PP

>> Peptidase_S29  Hepatitis C virus NS3 protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.6e-05     0.048     102     147 ..     229     276 ..     208     278 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.6e-05
  Peptidase_S29 102 elselkGssGsPilCdsGhvvGllvaavcsggv.vkavrfv.Pvetle 147
                    + s   G sG+P++  +G vvG+ +a+ +  g+    + f  P+e+++
     KIR65485.1 229 DASINPGNSGGPLVNARGEVVGVNTAIATIDGSgSIGIGFAiPIEQVQ 276
                    567778******************998776555155788888999886 PP

>> Peptidase_S7  Peptidase S7, Flavivirus NS3 serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00011      0.32      89     122 ..     228     260 ..     223     269 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
                   EXXXXXTT-TTSEEE-TTSXEEEECEEEEEXTTS CS
  Peptidase_S7  89 tdlnlssGsSGSlvlnqnkqivgiYfatvevdkk 122
                   td   ++G SG +++n ++++vg+  a    d +
    KIR65485.1 228 TDASINPGNSGGPLVNARGEVVGVNTAIATID-G 260
                   5667889****************987766555.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2134.49
//
Query:       KIR65486.1  [L=101]
Description: hypothetical protein TK50_08770 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.39   10.9   6.4        4.7    7.4   1.1    2.1  2  Metal_resist  Heavy-metal resistance
        3.7    8.1   5.7         15    6.1   5.7    1.8  1  FtsX          FtsX-like permease family


Domain annotation for each model (and alignments):
>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.4     0.001         9       3      51 ..       5      49 ..       4      54 .. 0.79
   2 ?    7.4   1.1   0.00053       4.7       4      32 ..      61      89 ..      60     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.001
                  .XXXXXXXXXXXXXXXXXXXXXXXTTHHBH.HHHHHHHS-TTHHHHHHH CS
  Metal_resist  3 LalNlfllGalvgaalrgpggpppggpargraellraalgLpaeqrael 51
                  ++++l+++G+lvg  ++    + ++g+    a++++a+ + p ++ra++
    KIR65486.1  5 VIAALLVVGLLVGCGVGSAYARARRGW----ADYRTARNTVPGARRAAF 49
                  567888888888888888888888888....788888888888888876 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00053
                  XXXXXXXXXXXXXXXXXXXXXXXTTHHBH CS
  Metal_resist  4 alNlfllGalvgaalrgpggpppggparg 32
                  +++l+l+Ga++ aa  g+ + +p++++++
    KIR65486.1 61 VIALLLVGAVAYAAGSGDDRAGPAPGPSA 89
                  6899*********9999999999999877 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.7    0.0017        15      25      53 ..       6      34 ..       5      77 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0017
        FtsX 25 illitlvalviGlglgllaaqllsdvlls 53
                i+++ +v+l++G+g+g+++a +   + + 
  KIR65486.1  6 IAALLVVGLLVGCGVGSAYARARRGWADY 34
                57899**************9984444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 814.87
//
Query:       KIR65487.1  [L=141]
Description: peptide chain release factor 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-19   70.5   0.0    1.4e-19   70.1   0.0    1.1  1  RF-1      RF-1 domain


Domain annotation for each model (and alignments):
>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   7.8e-24   1.4e-19       5     115 ..      11     135 ..       7     139 .. 0.78

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 7.8e-24
                 CE--GGGEEEEEE---SSSSSSGCSSSCEEEE....EETTT...................TEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCCCC CS
        RF-1   5 ieidekdleidtfrssGaGGQnVNktesaVrl....thlpt...................gvivvecqeeRsqekNrekAlerLkaklkekeleeekee 80 
                 + ++ ++l+ +++rssG+GGQ VN+t+s+V+l       p+                   gv++++++e+R q +Nre A+er++a l+e+     +  
  KIR65487.1  11 LVVPAAELRERFSRSSGPGGQGVNTTDSRVELsfdvAGSPSlpeplraraldrlagrlvdGVLTIAASEHRAQLANREAARERMAALLREA----VAPP 105
                 568999**************************86642234488899**************9***************************664....3445 PP

                 CHTTTTT-..S.-S---S--ECEEEECGCTTEEEET CS
        RF-1  81 ekkrrvkk.ekkkigtgssekiRtynkkpqsrvkdh 115
                 +  rr ++ ++       ++++R+  kk+q + k+ 
  KIR65487.1 106 PPPRRPTRpSRG------AKERRLADKKRQAQRKRD 135
                 555555553333......456666666666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1074.30
//
Query:       KIR65488.1  [L=381]
Description: cellulose-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-29  100.7   6.4    4.6e-29  100.7   6.4    2.2  3  CBM_2            Cellulose binding domain
    1.6e-20   74.3   0.7    1.6e-20   74.3   0.7    2.1  2  Lipase_GDSL_2    GDSL-like Lipase/Acylhydrolase family
    1.9e-08   34.5   0.0      3e-08   33.9   0.0    1.3  1  Lipase_GDSL      GDSL-like Lipase/Acylhydrolase
  ------ inclusion threshold ------
      0.015   15.5   0.0      0.021   15.0   0.0    1.2  1  Lipase_GDSL_3    GDSL-like Lipase/Acylhydrolase family
      0.026   14.8   0.0       0.16   12.2   0.0    2.1  1  CARDB            CARDB
      0.058   12.6   0.0      0.086   12.1   0.0    1.1  1  OSK              OSK domain
        0.1   12.9   0.0        0.2   12.0   0.0    1.4  1  CBM49            Carbohydrate binding domain CBM49
        0.2   11.0   0.0       0.32   10.3   0.0    1.2  1  Lipase_GDSL_lke  GDSL-like Lipase/Acylhydrolase
        6.8    4.2  11.7        9.2    3.8  11.7    1.1  1  TALPID3          Hedgehog signalling target


Domain annotation for each model (and alignments):
>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       3.1   6.2e+03      56      75 ..      50      69 ..      47      81 .. 0.68
   2 ?   -3.1   0.1       5.1     1e+04      31      48 ..     186     204 ..     180     214 .. 0.45
   3 !  100.7   6.4   2.3e-32   4.6e-29       1      93 [.     284     376 ..     284     380 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.1
                TTEEEEEE-STT-EE-TTEE CS
       CBM_2 56 GnsvtatnvswNgtiapGgs 75
                G++   +++ wN+   +G +
  KIR65488.1 50 GSPGCWRSILWNRLQSTGHT 69
                66667778889987777765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.1
                 S-EEEEE-.-TTEEEEEEE CS
       CBM_2  31 gWtvewtl.pagqrvtqlW 48 
                 gW    t  ++   v+++W
  KIR65488.1 186 GWAAGKTTaQSPIVVVDQW 204
                 4444333312222333444 PP

  == domain 3  score: 100.7 bits;  conditional E-value: 2.3e-32
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S- CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsapts 93 
                 ++a y++  +W++Gf+++vtv+N+g++a+ gWtv++ + +gqr+ q+Wna+v+qsG++vta+nv+wNg +apG+ a+fGf +s  +sn+ p++
  KIR65488.1 284 CTAVYRIVGQWQGGFQGEVTVRNTGTAALGGWTVRFGYADGQRINQAWNADVTQSGTAVTARNVGWNGGLAPGAEATFGFLASAGSSNPVPQT 376
                 899************************************************************************************998875 PP

>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.7   7.9e-24   1.6e-20       2     178 ..      44     225 ..      44     226 .. 0.83
   2 ?    1.3   0.4       0.2   3.9e+02      34      59 ..     303     335 ..     275     363 .. 0.62

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 7.9e-24
                    EESHHHH..TCTTB.......CCHCHHCCCCCCCHHHTT...-EEEEE.EEHCCH.-H....HHHHHHHHCTGGG-TSEEEEE--CCCCCTT--HH CS
  Lipase_GDSL_2   2 lGDSiTa..Gygad.......gggrsypaylarllaarl...gldvvnnlgvsGa.tt..allrllerlrdllrlkpdlvtiliGtNDlgrgvpaa 82 
                    lGDSiT   G++ +       ++g++  ++++ l  + +   ++d  n  g +G+  t  a+++ll+++   ++ +pd+v++++GtND++ +  +a
     KIR65488.1  44 LGDSITGspGCWRSilwnrlqSTGHTNVDFVGTLGPQ-GcgqPYDGDN-EGHGGYlVTnvANQNLLPGWL--SATDPDVVLMHFGTNDVWSNIAPA 135
                    8*****9666655588888887777777774444444.4476677777.******7336899*******9..899********************* PP

                    HHHHH..HHHHHHHHCCC...GEEECEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHH.....CT-EEE-HHHHHHHCCCCCGGBBTTS.SSB- CS
  Lipase_GDSL_2  83 aaaandnleelidalraaapgarilvlgplpptpeaaadarelnaviaaynealrevaae.....egvpfvDlhdaladsgerladlladdglHPn 173
                    ++ a+  + +l+d++ra +p  r++v+ ++p+ p + a+  +   ++ a+n a+  +aa        +++vD ++ ++  ++++     d+ +HPn
     KIR65488.1 136 TILAA--YSKLVDQMRASNPAMRVIVAKIIPMAPASCAECGQ---RVVALNSAIDGWAAGkttaqSPIVVVDQWTGFSTAADTY-----DG-VHPN 220
                    *****..******************88888888888777655...999999999999999888889999999999999998776.....44.**** PP

                    HHHHH CS
  Lipase_GDSL_2 174 aaGyr 178
                    aaG +
     KIR65488.1 221 AAGDQ 225
                    ***87 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.2
                    EEEE....EEHCCH-H.......HHHHHHHHCTG CS
  Lipase_GDSL_2  34 dvvnn...lgvsGatt.....allrllerlrdll 59 
                    +v+ n   ++ +G+t+     +++r+++ +++  
     KIR65488.1 303 TVR-NtgtAALGGWTVrfgyaDGQRINQAWNADV 335
                    333.247799999999855555555555555333 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.5e-11     3e-08       2     199 ..      42     230 ..      41     231 .. 0.73

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.5e-11
                  EEEESHHHHTT..THHHHHHHCCCCEECCCTTC.GCEEEEEEECTTHHHHHHHCCH.....ECTTTECHHHHHCTTSEEEEE--CTCC-EECSSCTTT CS
                  xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL   2 vafGDSltdGd..gaatlntiqlktpknlnefdlaldrianignkgasdnelqqll.....nkyplkseqlkalhpdlviislGtNDsnlgkkstdaa 92 
                  + +GDS+t G    + ++ +++l+++   n  ++++++++  g+  ++dne ++ +      +++l    l a  pd+v++ +GtND+          
   KIR65488.1  42 MPLGDSIT-GSpgCWRSILWNRLQSTGHTNVDFVGTLGPQGCGQPYDGDNEGHGGYlvtnvANQNLLPGWLSATDPDVVLMHFGTNDV--------WS 130
                  67899998.655566666666666666677777767777777777777777776666666633333444678999*************........99 PP

                  CEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCHCTCCCCHCCHHH...HHHHHHHHHHHHHHHHHHCTEEEECHHHHHHHTHCCGCHCHTSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  93 kkeaeeyiknlreaikelkeegapkaivvlvsppglgpqeekdakklgek...gnefvgeynqrlndlaekdgfavvDlydelqglsgieqlkaDglH 187
                  +  ++ + + + +++++ ++++ p + v++ ++++ +p   ++  ++g++   +n +++ ++   +++ +++ ++vvD +  ++  +++     Dg+H
   KIR65488.1 131 NIAPATILAAYSKLVDQMRASN-PAMRVIVAKIIPMAP---ASCAECGQRvvaLNSAIDGWAA--GKTTAQSPIVVVDQWTGFSTAADTY----DGVH 218
                  9999999************777.***************...3333333331113444444444..555559*******999999995554....**** PP

                  B-HHHHHHHHHH CS
                  xxxxxxxxxxxx RF
  Lipase_GDSL 188 psekgyeklael 199
                  p+ +g +k++++
   KIR65488.1 219 PNAAGDQKMSDR 230
                  *********976 PP

>> Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0     1e-05     0.021      58     175 ..     114     233 ..     104     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1e-05
  Lipase_GDSL_3  58 vdasvfvldllpN.....asaeeirerleyfvktlrkahPktpillvedlsttkglvdeklekeveaknkaleelvkklkkekekklylisskell 148
                     d++v ++ +  N       +  i     ++v+++r+ +P+  +++ + + +  ++  e  +++v a n+a++  ++  ++ +   + ++++    
     KIR65488.1 114 TDPDVVLMHFGTNdvwsnIAPATILAAYSKLVDQMRASNPAMRVIVAKIIPMAPASCAE-CGQRVVALNSAIDGWAAGKTTAQ-SPIVVVDQWT-G 206
                    5666666655555555559999**************************88877777777.999*********99998875555.5566666655.2 PP

  Lipase_GDSL_3 149 gkdeeatvdgiHpsdlGllryadalee 175
                     ++  +t+dg+Hp+  G ++++d   +
     KIR65488.1 207 FSTAADTYDGVHPNAAGDQKMSDRWYP 233
                    4556679************99998765 PP

>> CARDB  CARDB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.1e-05      0.16      24      64 ..     301     360 ..     297     374 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.1e-05
                 EEEEEE-SSS-EEEEEEEE.EETTEEE...EEEEE...............SEE-CTEEEE CS
       CARDB  24 tvtvkNqGtaasgatkval.yldgelv...gtvtv...............psLaagestt 64 
                 +vtv+N+Gtaa g ++v++ y+dg+      +++v                +La+g+++t
  KIR65488.1 301 EVTVRNTGTAALGGWTVRFgYADGQRInqaWNADVtqsgtavtarnvgwnGGLAPGAEAT 360
                 69****************988999887644222334444455556666666666666555 PP

>> OSK  OSK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.3e-05     0.086      72     156 ..     117     208 ..     111     215 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.3e-05
                 -EEEEE--HHHHHTT--HHHHHHHHHHHHHHHHHT..T-EEEEE-----GGGTT-HHHHHHHHHHHHHH......HHHT.TTS-EE--SGGGB CS
         OSK  72 srvvvnlGsvDilngktlvelehDlteLlkelrer..nvaiilttlaPlaNlsaekklsdkllkfNnfi......rkeakenykviDlyecfv 156
                 + v+++ G+ D+  + +   +     +L+ ++r     +++i++ + P+a +s   +  ++++ +N+ i      +++a++ + v+D +  f 
  KIR65488.1 117 DVVLMHFGTNDVWSNIAPATILAAYSKLVDQMRASnpAMRVIVAKIIPMAPASC-AECGQRVVALNSAIdgwaagKTTAQSPIVVVDQWTGFS 208
                 56899****************************9967899**********9884.45677888999988887777666777777888777765 PP

>> CBM49  Carbohydrate binding domain CBM49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.9e-05       0.2      20      79 ..     299     364 ..     288     366 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.9e-05
       CBM49  20 qvevtitNnssktiksltlkienla...pgeiWgvek.vskntyslps..wlsslsaGeslsFgYi 79 
                 q evt++N++++++   t+          ++ W+ +  +s+  ++  +  w+ +l +G++ +Fg+ 
  KIR65488.1 299 QGEVTVRNTGTAALGGWTVRFGYADgqrINQAWNADVtQSGTAVTARNvgWNGGLAPGAEATFGFL 364
                 679***********988776652223369*****9995555555554355**************96 PP

>> Lipase_GDSL_lke  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00016      0.32      62     143 ..      86     168 ..      81     173 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00016
  Lipase_GDSL_lke  62 fsgatichtgyrkedysdrsfitrlkalgtpdiilvfgatndswag.splgeykyagwakkdlysfrpalaylldslidlypn 143
                      + g    h gy   + +++ ++    +   pd++l+  +tnd+w++ +p           +++    pa+  +++++i + p+
       KIR65488.1  86 YDGDNEGHGGYLVTNVANQNLLPGWLSATDPDVVLMHFGTNDVWSNiAPATILAAYSKLVDQMRASNPAMRVIVAKIIPMAPA 168
                      566666778888888888888888888889**************974565555444444577888899999999999888776 PP

>> TALPID3  Hedgehog signalling target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  11.7    0.0046       9.2    1003    1032 ..     242     271 ..     221     283 .. 0.59

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0046
     TALPID3 1003 tspaktlvktPvvtPvatPpkvatpsppls 1032
                  t+p++t+  tP++tP+atP++  +++p+ls
  KIR65488.1  242 TTPTATPTATPSATPTATPTPTPSVTPTLS 271 
                  345555555555555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2605.62
//
Query:       KIR65489.1  [L=290]
Description: 3-methyladenine DNA glycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2118.84
//
Query:       KIR65490.1  [L=485]
Description: hypothetical protein TK50_08795 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.8    8.2   4.3        1.8    8.2   0.3    2.3  2  DotU      Type VI secretion system protein DotU
        5.8    7.1  10.0        4.4    7.5   2.2    2.7  2  CcmD      Heme exporter protein D (CcmD)


Domain annotation for each model (and alignments):
>> DotU  Type VI secretion system protein DotU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.4     0.035   3.1e+02     172     201 ..     210     237 ..     180     248 .. 0.54
   2 ?    8.2   0.3   0.00021       1.8     173     201 ..     301     333 ..     282     337 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.035
        DotU 172 eaarrllrrelplwvilalallvllllflg 201
                 ++  ++  + +p w   a++l++l+++fl 
  KIR65490.1 210 VPVAQA--TNAPAWRRPAALLAALAGVFLL 237
                 333333..2445554444444444444432 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00021
        DotU 173 aarrll....rrelplwvilalallvllllflg 201
                 ++ +++    rr+ p+w+++++a++vl+++ l+
  KIR65490.1 301 RPVAPVavarRRRPPVWLLVGAAAAVLAGVVLA 333
                 222222333345678*************98876 PP

>> CcmD  Heme exporter protein D (CcmD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   1.1    0.0099        89      12      31 ..     233     252 ..     233     256 .. 0.88
   2 ?    7.5   2.2   0.00049       4.4       7      36 ..     316     345 ..     314     348 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0099
        CcmD  12 gitllvlagLilwslrdrrr 31 
                 g++ll+ +gL++w +++r  
  KIR65490.1 233 GVFLLTAGGLWWWQRHRRAG 252
                 8999************9975 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00049
        CcmD   7 VWlsYgitllvlagLilwslrdrrrllrel 36 
                 VWl +g++++vlag++l+  +   r ++++
  KIR65490.1 316 VWLLVGAAAAVLAGVVLAATLTATRRVAAI 345
                 9***************99888777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.47
# Mc/sec: 3083.25
//
Query:       KIR65491.1  [L=256]
Description: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-63  213.1   0.0    4.4e-63  212.9   0.0    1.0  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
    1.8e-12   47.9   1.4    4.1e-12   46.8   0.1    2.2  3  DUF2437        Domain of unknown function (DUF2437)


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.9   0.0   4.9e-67   4.4e-63       1     218 []      52     253 ..      52     253 .. 0.95

  Alignments for each domain:
  == domain 1  score: 212.9 bits;  conditional E-value: 4.9e-67
                    .EEEEEEE--SHHHHHTTT.-SS-EEEEEEGGGE.EETTE..EE-TTSSSS-EE......EEEEEEEESS-B--T--HHHHHTTEEEEEEEEEEE- CS
  FAA_hydrolase   1 kivcdglnyaehvreagkaaeeppdrhiplepvfflkrasslvgpgdpirrPagsekldyEvELavvigkplrevlsveeAedaiaGytllnDvsa 96 
                    k+vc+g+nyaeh++e+g   +++p+     ep +flk+++s++gp+d ir+P +s+++++E+ELavvig+p  +  + + Ae ai+Gyt +nDv+a
     KIR65491.1  52 KVVCVGRNYAEHAAELG---NDVPK-----EPLLFLKPSTSVIGPRDAIRLPIFSKQVEHEAELAVVIGAPGARRADRAAAERAIFGYTCANDVTA 139
                    689*************8...88988.....788*************************************88887799****************** PP

                    SBGGG---.HHHHHHTGGGEEEEEE-B--B-.STT---SS-EEEEEE.....TTEEEEEEEGGGTTTSHHHHHHHHHHHH-B-TT-EEEEEES... CS
  FAA_hydrolase  97 RdlqaeekaplgwflgksfdtftpiGpwivtpdeledpedlelrlrv.....ngeevqdsntkdmifspaeliahlsagltLepGdliltGTpsgv 187
                    Rdlq+++    +w+++k+fd+f+piGpwi+t  ++    dle+r+ v     + e++q ++t+dm+f+++ l++++s ++tL pGd++ltGTp+gv
     KIR65491.1 140 RDLQRSDG---QWTRAKGFDSFCPIGPWITTGLDV---TDLEVRCEVgrnpdEMEVRQLGRTRDMVFDVPALVSYVSHVMTLLPGDVVLTGTPAGV 229
                    ********...******************997777...589999999888888899***************************************8 PP

                    ....S--EE--TT-EEEEEETTTEEEEEEE. CS
  FAA_hydrolase 188 gaeeeslkflkdgDeveveieglGelrnrVa 218
                    +        l +gD+v+v+ieg+Gel n+V+
     KIR65491.1 230 S-------PLTEGDTVTVRIEGIGELSNPVV 253
                    7.......5*******************995 PP

>> DUF2437  Domain of unknown function (DUF2437)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.1   4.6e-16   4.1e-12      13      50 .]       2      47 ..       1      47 [. 0.98
   2 ?   -3.9   0.0         2   1.8e+04      30      37 ..     161     168 ..     153     175 .. 0.71
   3 ?   -1.6   0.0       0.6   5.4e+03      24      40 ..     221     238 ..     219     242 .. 0.63

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 4.6e-16
                EEEEEE.........EEEEEESS-TTSS-EEEEEEEEGGGSEEE-S CS
     DUF2437 13 ryGvle........gdtvvvlagdpfgavqpTGervpLadVrLLAP 50
                ++Gv+e        g tv++++g+pfg++q++G+r++L+dVrLL+P
  KIR65491.1  2 SFGVVEgepgagpeGLTVAEIEGHPFGQIQFSGARWALSDVRLLSP 47
                8********************************************9 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2
                 TSS-EEEE CS
     DUF2437  30 fgavqpTG 37 
                  g++ +TG
  KIR65491.1 161 IGPWITTG 168
                 47778887 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.6
                 EESS-TTS.S-EEEEEEE CS
     DUF2437  24 vlagdpfg.avqpTGerv 40 
                 vl+g+p g  + + G +v
  KIR65491.1 221 VLTGTPAGvSPLTEGDTV 238
                 788887743555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1643.55
//
Query:       KIR65492.1  [L=228]
Description: IclR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-20   73.1   0.7    1.5e-18   66.8   0.1    3.0  2  IclR      Bacterial transcriptional regulator
    5.7e-09   35.6   2.3    1.1e-08   34.8   0.4    2.4  3  HTH_IclR  IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.093   12.6   0.2      0.093   12.6   0.2    3.0  4  MarR_2    MarR family


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.051   3.1e+02      24      60 ..      13      50 ..      10      55 .. 0.82
   2 !   66.8   0.1   2.6e-22   1.5e-18       7     121 ..     120     221 ..     115     226 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.051
                HHHTS.-HHHHHHHHHHHT---SSTTS--SHHHHHHHH CS
        IclR 24 lLaal.deeeleallerlelkrlterTitdpeeLleeL 60
                +Laa  d ++l +l+er++l r t + +++  e+++ L
  KIR65492.1 13 ILAACvDGASLAELVERTKLPRATAHRLAQALEIHRML 50
                566665999999************99999888777766 PP

  == domain 2  score: 66.8 bits;  conditional E-value: 2.6e-22
                 TSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEEEETTT CS
        IclR   7 saiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvsgptar 105
                 + +G+ lp+ a +++++lLa++++e+++ ll r    ++t rT++          +vR++G+a +  E e+gv++++api+d++g+v+aA+s+sgp++r
  KIR65492.1 120 VPVGSVLPMTAGSAAQILLAWEPPEAVMPLLPR---SKFTGRTLA----------EVRRRGWAQSVAEREAGVASVSAPIRDRTGRVIAAISISGPIER 205
                 569*****************************9...788888766..........9******************************************* PP

                 SHHHHHHHHHHHHHHH CS
        IclR 106 lteeelkeellalvre 121
                 l ++  +++ +a vr+
  KIR65492.1 206 LGRRPGERHAMAVVRA 221
                 *999988878888775 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.4   1.8e-12   1.1e-08      11      51 ..      13      53 ..       7      54 .. 0.94
   2 ?   -2.1   0.0      0.59   3.5e+03      18      27 ..      61      70 ..      58      71 .. 0.75
   3 ?   -3.5   0.1       1.6   9.8e+03       8      18 ..      82      92 ..      77      94 .. 0.67

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.8e-12
                T-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR 11 alaeapqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                +la++  + +l+el +rt lp++t+hRl q L+ ++++ +d
  KIR65492.1 13 ILAACVDGASLAELVERTKLPRATAHRLAQALEIHRMLVRD 53
                589999999*****************************998 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.59
                S-BHHHHHHH CS
    HTH_IclR 18 eltlselArr 27
                + +l elA++
  KIR65492.1 61 GPRLGELANA 70
                459****986 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.6
                HHCT-CTTBSS CS
    HTH_IclR  8 iLdalaeapqe 18
                +L al+ a++e
  KIR65492.1 82 LLAALRDATGE 92
                46666666655 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   1.6e-05     0.093      16      54 ..      17      53 ..      10      63 .. 0.87
   2 ?   -2.3   0.0      0.74   4.4e+03      11      20 ..      83      92 ..      81     117 .. 0.53
   3 ?   -1.3   0.0      0.35   2.1e+03       9      32 ..     158     178 ..     156     182 .. 0.65
   4 ?   -2.1   0.1      0.63   3.8e+03      14      24 ..     206     216 ..     203     225 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.6e-05
                CTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2 16 rrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54
                + +g   + +el++r++l++++++r+ + L+ + +++r 
  KIR65492.1 17 CVDG--ASLAELVERTKLPRATAHRLAQALEIHRMLVRD 53
                6778..899*********************988888765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.74
                HHHHHCTTTS CS
      MarR_2 11 LaaLgrrpgr 20
                LaaL+++ g+
  KIR65492.1 83 LAALRDATGE 92
                5555555443 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.35
                 HHHHHHHCTTTSEEEHHHHHHHHT CS
      MarR_2   9 rvLaaLgrrpgrdltvgelarrlg 32 
                 r La+++rr+    +++  +r+ g
  KIR65492.1 158 RTLAEVRRRG---WAQSVAEREAG 178
                 5677787776...46666666555 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.63
                 HHCTTTSEEEH CS
      MarR_2  14 Lgrrpgrdltv 24 
                 Lgrrpg++ ++
  KIR65492.1 206 LGRRPGERHAM 216
                 78888874333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1678.22
//
Query:       KIR65493.1  [L=480]
Description: isopropylmalate isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.4e-160  534.0   0.0   3.8e-160  533.9   0.0    1.0  1  Aconitase  Aconitase family (aconitate hydratase)
  ------ inclusion threshold ------
      0.079   11.7   0.0       0.11   11.1   0.0    1.2  1  DUF521     Protein of unknown function (DUF521)


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  533.9   0.0  4.3e-164  3.8e-160       1     461 []      12     472 ..      12     472 .. 0.98

  Alignments for each domain:
  == domain 1  score: 533.9 bits;  conditional E-value: 4.3e-164
   Aconitase   1 ekiwdahlvee.eg...iayvpdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefernkeryefLksaak 95 
                 ek+wdah+v++ +g   ++y+ d +ll++vt++qa+ +l+ a+++vrr++ tlat dh++p+    d   +++++    ++d+++r  +++e+L+++++
  KIR65493.1  12 EKVWDAHVVRSaDGepdLLYI-DLHLLHEVTSPQAFDGLRLAGRRVRRTDLTLATEDHNTPTG-YADPAFSQRRGDLLTIADPTSR--TQIETLRRNCA 106
                 79*****99554444558888.*****************************************.99999999999999********..*********** PP

   Aconitase  96 afgirvvppg...qGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavigk 191
                 +fg+r+ p+g   qGIvH+++++ g+++pg+t+v++DSHT+++g++G+la+G+G++e+e+vl++q+l + +pk++ v++tG+l++gvtakDlvla+i++
  KIR65493.1 107 EFGVRLHPLGdanQGIVHVIGPQLGVTQPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLPQARPKTMAVNVTGQLGPGVTAKDLVLALIAQ 205
                 *************************************************************************************************** PP

   Aconitase 192 lrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaavlveaydkaqalf.elaadedaeydkvleldlstlep 289
                 +++ g+ g++vE+ Ge++++Ls+e+r+T+aNM++E+GA++g++++de+t++YLk  gr++a+ +++++d+a++++ +l +de+a++d +++ld+s ++p
  KIR65493.1 206 VGTGGGRGHIVEYRGEAIRALSMEGRMTVANMSIEWGAKAGMIAPDETTFAYLK--GRPNAP-QGADWDAAVEYWrSLPTDEGATFDAEVTLDASLITP 301
                 ******************************************************..******.7***********77********************** PP

   Aconitase 290 svagpkrPqdavplselvk.k.efkeelekeaaekaley.klkegtklkdgkvdiaaigSCTNssnedvraaagllakavekglkvkpgvktsvaPGSe 385
                  v+++++P +  pl   v+ + ef+ e e++aa++aley +l++gt+l+d +vd++++gSCTN+++ed+raaa++l+     g++v++gv+++v+PGS 
  KIR65493.1 302 FVTWGTNPGQGAPLGAAVPdPeEFAGESERAAARRALEYmDLTPGTPLRDLSVDVVFVGSCTNGRLEDLRAAADVLR-----GHTVADGVRMLVVPGSA 395
                 ******************98569******************************************************.....***************** PP

   Aconitase 386 vvkayleaeGlleiLekaGfevvgagCstCig.nsdrleegeaivsssNRNFegRqgpntrayLaSPelvvaaAlaG 461
                 +v++ +eaeGl++++++aG+e++ agCs+C+g n+d+l++ge+++s+sNRNFegRqg+++r++L+SP++++a+A+ G
  KIR65493.1 396 AVREAAEAEGLDKVFTDAGAEWRFAGCSMCLGmNPDTLAPGERSASTSNRNFEGRQGRGGRTHLVSPPVAAATAVVG 472
                 **************************************************************************987 PP

>> DUF521  Protein of unknown function (DUF521)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.3e-05      0.11     289     363 ..     352     431 ..     322     461 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.3e-05
      DUF521 289 ekvdlvalG.cPhlsleElrelaellkgkkkkvkvelwvtt.srevkeeaerlglveklekaGvkvl...sdtCmvvspl 363
                  +vd+v++G c    le+lr+ a++l+g++++++v+++v+  s +v+e+ae++gl +   +aG++     +++C+ ++p 
  KIR65493.1 352 LSVDVVFVGsCTNGRLEDLRAAADVLRGHTVADGVRMLVVPgSAAVREAAEAEGLDKVFTDAGAEWRfagCSMCLGMNPD 431
                 579999999678889******************9999888615669999***************9652225566666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3565.83
//
Query:       KIR65494.1  [L=195]
Description: isopropylmalate isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-27   95.4   0.0    9.8e-27   93.9   0.0    1.7  1  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0   5.5e-31   9.8e-27       1     129 [.       1     116 [.       1     118 [. 0.95

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 5.5e-31
                  CCCCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEEEHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHH CS
  Aconitase_C   1 mekllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgekedvvdaaerykkegaklvviagknfGeGSSRehAAkalr 98 
                  m+k++  +G+++++ +snvdtd++ip   ++ ++++g+   l++ +r          e++++v++   y   ga+++v++  +fG+GSSRehA +alr
   KIR65494.1   1 MDKFTVHTGTAVPLRRSNVDTDQIIPAVYLKRVTRTGFADGLFNAWR----------EDPSFVLNDAAYS--GASILVAG-PEFGTGSSREHAVWALR 85 
                  679999**************************************775..........5689*********..*****999.***************** PP

                  HTTEEEEEES-B-HHHHHHHHHTT-EEEEES CS
  Aconitase_C  99 llGikaviaeSFerIfennliknglLplefk 129
                  + G+kav+++ F++If+ n++k glLp+e++
   KIR65494.1  86 DWGFKAVVSPRFGDIFRGNALKEGLLPVELE 116
                  ****************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.54
# Mc/sec: 1091.55
//
Query:       KIR65495.1  [L=240]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-24   83.6   1.0    8.4e-24   83.6   1.0    2.6  3  Bac_DNA_binding  Bacterial DNA-binding protein
    0.00031   20.8   0.0    0.00075   19.6   0.0    1.7  1  HU-HIG           HU domain fused to wHTH, Ig, or Glycine-rich
  ------ inclusion threshold ------
        9.6    6.1  16.7         12    5.8  16.7    1.2  1  TFIIA            Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   1.0   1.4e-27   8.4e-24       1      89 [.       1      88 [.       1      89 [. 0.98
   2 ?   -4.2   4.7         3   1.8e+04      75      75 ..     166     166 ..      95     210 .. 0.60
   3 ?   -2.1   0.8      0.79   4.7e+03      56      56 ..     207     207 ..     177     237 .. 0.58

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 1.4e-27
                     EEHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHTT-EEEETTTEEEEEEEE--BS-B-TTT--B--B--EEEEEEEE-HHHHHHH CS
  Bac_DNA_binding  1 mtkkeLieeiaektgltkkdakrvveafldtikeaLkkgekvelsgFGtfkvkerkartgrnpkTgekvkiparkvvkFkpskelkeav 89
                     m+k+eLie++a + g  +k+a+++++a+l ++++a+ kgekv ++gFG f+ + r art+rnp+Tge+vk++++ v++F+++  +ke+v
       KIR65495.1  1 MNKAELIEALAVRLG-DRKTATAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGARTARNPRTGEAVKVKKTSVPTFRAGAGFKEMV 88
                     9**********9996.9**********************************************************************98 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 3
                      E CS
  Bac_DNA_binding  75 k 75 
                      +
       KIR65495.1 166 T 166
                      1 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.79
                      - CS
  Bac_DNA_binding  56 k 56 
                      k
       KIR65495.1 207 K 207
                      1 PP

>> HU-HIG  HU domain fused to wHTH, Ig, or Glycine-rich motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.3e-07   0.00075      53     123 ..      21      93 ..       6      95 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.3e-07
      HU-HIG  53 kavldaledelkeaLadGerVeLgelGyFslslks.kgvedekevransikkkki.nfrpgkklkkelkkasf 123
                  a+lda+  e++ a  +Ge V + ++G F   ++  +++ ++ + +a ++kk ++  fr+g+ +k+++ + ++
  KIR65495.1  21 TAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGaRTARNPRTGEAVKVKKTSVpTFRAGAGFKEMVASGKV 93 
                 689********************************8888889*************77**********998765 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  16.7     0.002        12     123     276 ..      75     220 ..      16     240 .] 0.35

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.002
       TFIIA 123 eppvqipagvtlqtasgqlykvnvqasgaqqiaaqplqqvvqqsqgsaaqssvaalqaq.sqqaqalaepqqqlekq..............qqqqqqqq 206
                  p     ag++  +asg++ k +v+a++++ +a+++   +  +  ++aa ++++  +a+  ++a+a a   ++ +++              +       
  KIR65495.1  75 VPTFRAGAGFKEMVASGKVPKATVAAKKTATAATKATTAKATT--AKAAGTKATTAKATtAKAAGAKAAGAKATTAKaagakatgakattaK------- 164
                 3334444577777777777777776666666665555555332..22222222222222111111111111111111111111111111110....... PP

       TFIIA 207 qqqqqqqvqqqqqeesqqaqqasqeqvagsqvessqtdgaedaleeespvlegelsaeeeagaqkeelsr 276
                      +++ +++ + +++a++++  ++a++++++++++ a+ +++ +++          +a+a+++++++
  KIR65495.1 165 -----ATTATKKAA-PAKATKTTAAKTATKKAAPAKKSAAATKSTAAKKT--------TTAAARSTTAKS 220
                 .....111111111.11111110001111111111111111111111111........000111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2487  (0.138714); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                       164  (0.00914719); expected 17.9 (0.001)
Passed Fwd filter:                        69  (0.00384851); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.15u 0.38s 00:00:01.52 Elapsed: 00:00:00.50
# Mc/sec: 1436.24
//
Query:       KIR65496.1  [L=666]
Description: endonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-13   51.1   0.3    2.2e-13   50.2   0.3    1.5  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.3   1.3e-17   2.2e-13       3     233 .]     442     656 ..     440     656 .. 0.81

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1.3e-17
                    EEESTG.....CHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEE CS
                    xxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   3 wNvngq.....aspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllalggflgasstsptgggggggnggavlsrfpltslfrrtfie 93 
                    +N+ ++      ++        d la ++++ ++Dv+ L Evd ++l +                       gg++ +a+l  +   s +  +  +
     KIR65496.1 442 YNIRMGfgldgRFD-------PDGLARVVARERPDVVVLGEVDRGWLLN-----------------------GGHDTLALLAARLRMSYVFAPAAD 507
                    77777655554444.......667*****************99886444.......................555556666666666666666666 PP

                    TSSSSGCEEEEEEEEEEEEEEE..........................CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBS CS
                    xxxxxxxxxxxxxxxxxxxxxx..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  94 fndlvaalrreplaakleqlni..........................ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsr 163
                      + +a l r plaa                                 a+h  ++ +r+  ++a   ++ al  + g p++vaGD+N+ p ++++ 
     KIR65496.1 508 PLWGDAVLGRFPLAAARSERLApagaptgaqalgvtvdlgggvrlavvATHLQPPPGREPVAQARAVAAFALRYAAGLPLVVAGDLNTEPGAPGYA 603
                    666666666666666666666667777777777777778888888*************************************************** PP

                    CGHHHHHHCTTTHHSSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 164 vlrtrglalapapvglyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrrealtlSDH 233
                     ++ +gl +a       l    p pt ++  ++  +D++l+s +++  +       +          SDH
     KIR65496.1 604 EFTRAGLVDA-------LASARPLPTSPADEPREQIDHVLVSAGMRAADPVAPRSIA----------SDH 656
                    ********97.......69***********************988887777766666..........888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 4856.48
//
Query:       KIR65497.1  [L=292]
Description: NUDIX hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-16   60.6   0.2    2.7e-16   59.8   0.2    1.4  1  NUDIX       NUDIX domain
    3.6e-10   39.9   0.3    7.1e-10   38.9   0.3    1.4  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.2   3.1e-20   2.7e-16       4     129 ..       9     129 ..       7     131 .. 0.79

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 3.1e-20
                 EEEEEE.EEETTSE..EEEEEESSSSTTTEESSEEECBTTSHHHHHHHHHHHHHHSEEE.EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.EEECSGCS CS
       NUDIX   4 ravgvv.llnekge..vLlvrrskkpfpgWelPgGkvepgEtpeeAArREleEEtGlea.ellellgrlhylapydgpygdeheilyvfl.eevegele 97 
                 ra+g v  ++ +g   v lv+r   +  +W+lP+Gk+epgE p  AA+RE++EE+ ++a ++++l +       y+   + ++ ++y+   + ++g  +
  KIR65497.1   9 RAAGGVaWRQADGGvlVCLVHRP--RYGDWSLPKGKLEPGEHPLLAAVREVAEEADVRAvPQVRLPT-----VRYRSEGR-PKVVDYWSMrAVDTGGFQ 99 
                 45666646677777788888888..6777****************************9999999988.....23333333.999999999566666655 PP

                 STSTTTEEEEEEEEHHHHHHHHTHCTHHHHHH CS
       NUDIX  98 pndenevsevrwvpleellkeklaaesrkllp 129
                 p  + ev+++rw+p+ e+++   +++++++l 
  KIR65497.1 100 P--DTEVDGIRWLPVGEAARLVSYPHDAEVLT 129
                 5..5**************88888888888776 PP

>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.3   7.9e-14   7.1e-10       2      83 ..     142     222 ..     141     238 .. 0.90

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 7.9e-14
                 EEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----G CS
  His_Phos_1   2 yLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidaiysSplkRarqTaeliaealglpveldegLrEidfG 83 
                  LvRH++   + +   +  +  pL+++G +qA+ala  +a +++++++s   +R++qT  ++a+ l+lpve++ +L+E   G
  KIR65497.1 142 ALVRHAQAGQRGT-WSGPDSARPLDATGWAQAHALAPLVALVRPTRLLSASARRCVQTLDPAAALLDLPVEVTGDLDEPRPG 222
                 69*****999755.455667789******************************************************97666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1937.32
//
Query:       KIR65498.1  [L=65]
Description: cold-shock protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.065   13.1   0.0      0.075   12.9   0.0    1.1  1  CSD       'Cold-shock' DNA-binding domain
      0.068   13.2   0.0       0.11   12.6   0.0    1.4  1  TruB-C_2  Pseudouridine synthase II TruB, C-terminal


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.3e-06     0.075       1      48 [.       1      47 [.       1      55 [. 0.94

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.3e-06
                EEEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEE CS
         CSD  1 ltGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVe 48
                ++GtV +++a+ + G    +dg  ++ +   a+  +g+r L  gq+V 
  KIR65498.1  1 MQGTVATYDAATRSGMLLLDDGT-ELAFPARAFDASGLRLLRLGQRVR 47
                79********************9.9*********************97 PP

>> TruB-C_2  Pseudouridine synthase II TruB, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.2e-05      0.11       6      34 ..      33      60 ..      28      63 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.2e-05
    TruB-C_2  6 seesakrflqGQrvklaaglpaeg.lVRvy 34
                +++ ++ ++ GQrv++  + +a g  VRv+
  KIR65498.1 33 DASGLRLLRLGQRVRV--ETDATGeIVRVT 60
                56667889******66..5555555***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.45
# Mc/sec: 437.96
//
Query:       KIR65499.1  [L=248]
Description: acyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-28   96.6   0.0    1.1e-27   96.3   0.0    1.1  1  Acyltransferase  Acyltransferase
     0.0019   17.2   0.0      0.073   12.0   0.0    2.1  2  DAGAT            Diacylglycerol acyltransferase
  ------ inclusion threshold ------
      0.037   13.2   0.0      0.094   11.9   0.0    1.6  2  Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransfera


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.0   1.8e-31   1.1e-27       3     134 ..      28     156 ..      26     157 .. 0.96

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 1.8e-31
  Acyltransferase   3 rvtglenlpekgpailvaNHqsylDvlllwlllyksn.gprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegklv 95 
                      + +g+e+l+++g++i+v+NH s++D+l+ ++ +y+ + +   +++++k++++++p++g++++++  i+++R +  +a +sl+ ++ +l+eg  v
       KIR65499.1  28 TWRGMEHLRHDGGIIIVPNHLSHADPLVSAHFVYDAGrW---PRFLGKASVFRVPVVGWILHRCLQIPVER-GTVDAVKSLDALVAALREGGAV 117
                      56799****************************999955...9****************************.9999****************** PP

  Acyltransferase  96 viFPEGtrsregel..lpfkkGlvrlaakakkgvpivPvai 134
                      vi+PEGt++re  l  ++ k+G++rla+ +  g p++Pva+
       KIR65499.1 118 VIYPEGTTTREPDLwpMRGKTGAARLALAT--GAPVIPVAM 156
                      *************999**************..*******98 PP

>> DAGAT  Diacylglycerol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   1.2e-05     0.073     121     204 ..      96     173 ..      75     176 .. 0.78
   2 !    4.7   0.0     0.002        12     235     278 ..     171     215 ..     167     221 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.2e-05
       DAGAT 121 GlievsresieyvLdkeekGravvlvvGGaeealeahpgketltLkkrkGfvkialktGadLvPvysfGendvykqvenpkgsk 204
                 G +++  +s++ ++   ++G avv+ + G+      +p  +   +  + G  ++al tGa+++Pv  +G +++++  +n  g++
  KIR65499.1  96 GTVDAV-KSLDALVAALREGGAVVIYPEGTT---TREP--DLWPMRGKTGAARLALATGAPVIPVAMWGPERLFDPRNNRLGLR 173
                 555554.477888888888888888887754...2334..455677889*************************9999988876 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.002
       DAGAT 235 GllPfrkpittvvGkPievtkt..eePtkeeidelhakYveaLaeL 278
                 Gl P r p+t+v G P++ ++     Ptk  ++e+  + + +L++ 
  KIR65499.1 171 GLRP-RIPVTVVAGPPVDLSRWagSTPTKATLEEMTDTIMLRLRDQ 215
                 5555.78************9963368*********99999999875 PP

>> Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.34   2.1e+03     100     129 ..      22      47 ..       8      52 .. 0.69
   2 ?   11.9   0.0   1.6e-05     0.094     180     240 ..     103     157 ..      94     165 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.34
  Lip_A_acyltrans 100 eiakrveviglehikealaeeegvilllpH 129
                      ++  r ++ g+eh++    ++ g+i++  H
       KIR65499.1  22 TVWTRRTWRGMEHLR----HDGGIIIVPNH 47 
                      555666788888888....77888887777 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.6e-05
  Lip_A_acyltrans 180 aikelikalrkgevvvllpDqdlgrkdsvfvpfFgepaatttspaklalktkaavipvaii 240
                       +  l+ alr+g +vv+ p+   +r+     ++   p +  t++a+lal t+a+vipva++
       KIR65499.1 103 SLDALVAALREGGAVVIYPEGTTTRE----PDLW--PMRGKTGAARLALATGAPVIPVAMW 157
                      37899******************999....6775..678899*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1775.69
//
Query:       KIR65500.1  [L=70]
Description: hypothetical protein TK50_08885 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-24   84.8   0.6    4.2e-24   84.4   0.6    1.1  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   0.6   2.3e-28   4.2e-24       1      51 [.      12      61 ..      12      62 .. 0.95

  Alignments for each domain:
  == domain 1  score: 84.4 bits;  conditional E-value: 2.3e-28
      DUF397  1 atWrKSsySgggggnCVEvaalpdavavRDSkdpdgpvLtftpaewaaFla 51
                a+WrKSs+Sg++g +CVE+a +p+avavRDSkdp+gp+L f+p++waaF a
  KIR65500.1 12 ARWRKSSRSGDEG-ACVEMAVVPGAVAVRDSKDPTGPALLFPPTAWAAFAA 61
                69*********99.5*********999**********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      141  (0.00786435); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 556.61
//
Query:       KIR65501.1  [L=281]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-15   57.2   5.2    2.5e-15   56.6   3.1    2.3  2  HTH_31       Helix-turn-helix domain
    3.1e-13   49.6   0.1    1.7e-12   47.2   0.1    2.2  2  HTH_3        Helix-turn-helix
    2.9e-08   33.6   0.0    5.3e-08   32.8   0.0    1.5  1  HTH_19       Helix-turn-helix domain
     0.0031   17.3   1.6      0.013   15.4   0.2    2.5  2  HTH_25       Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.4       0.33   10.8   0.2    2.0  1  HTH_23       Homeodomain-like domain
       0.16   11.7   0.0       0.29   10.8   0.0    1.3  1  Sigma54_DBD  Sigma-54, DNA binding domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   3.1   8.3e-19   2.5e-15       1      63 [.      10      71 ..      10      72 .. 0.97
   2 ?   -0.6   0.0      0.59   1.8e+03      28      49 ..     124     145 ..     119     157 .. 0.68

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 8.3e-19
      HTH_31  1 aLGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerae 63
                +LG  Lr+ Re+aGL++e++A+ ++ ++stlsr+E+++  + spa+++al++++g+  +e+a+
  KIR65501.1 10 RLGIALRTHREAAGLTLEAAADEINSTRSTLSRYENAQT-LISPATVRALLTLYGVGADELAA 71
                69*************************************.9****************999987 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.59
      HTH_31  28 estlsrlEqGrrgrpspavlea 49 
                 +++++ +++G     s +++e+
  KIR65501.1 124 ADYIRGVMRGGPHTLSDEQVEQ 145
                 5677777777766667666665 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.1   5.6e-16   1.7e-12       1      55 []      15      69 ..      15      69 .. 0.97
   2 ?   -1.0   0.0      0.65   1.9e+03      38      53 ..     188     203 ..     184     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 5.6e-16
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsldel 55
                l+  R+++gl++e +A++++ +rst+sr+En ++ +s+ t+ +l+  +gv  del
  KIR65501.1 15 LRTHREAAGLTLEAAADEINSTRSTLSRYENAQTLISPATVRALLTLYGVGADEL 69
                6888***********************************************9997 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.65
                 HHHHHHHHHHHTSEHH CS
       HTH_3  38 letlkklakaLgvsld 53 
                 l  l+k+a+  +++ +
  KIR65501.1 188 LHHLLKMAELPNITVQ 203
                 56899****9999876 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.8e-11   5.3e-08       1      61 [.      12      71 ..      12      75 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 1.8e-11
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyllq 61
                G  L+  Re +glt+e+ a+++  +rs +s +En ++  +s+ ++++++ ++g+ +++l  
  KIR65501.1 12 GIALRTHREAAGLTLEAAADEINSTRSTLSRYENAQT-LISPATVRALLTLYGVGADELAA 71
                6789*********************************.****************9999875 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   4.2e-06     0.013       2      34 ..      15      47 ..      14      63 .. 0.76
   2 ?   -0.2   0.1       0.3     9e+02      11      38 ..     138     165 ..     136     169 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.2e-06
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT- CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEedd 34
                Lr  Rea+gl+le++a+e++   ++l + E+ +
  KIR65501.1 15 LRTHREAAGLTLEAAADEINSTRSTLSRYENAQ 47
                9******************98888888888874 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.3
                 --HHHHHHHSS--HHHHHHHHCT--TTS CS
      HTH_25  11 lsleevaketkIrkdylealEeddfdal 38 
                 ls e+v+++ ++r d  +++  dd++ l
  KIR65501.1 138 LSDEQVEQRVHLRLDRQQRITGDDPAIL 165
                 67799*****999987777777776655 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00011      0.33       6      39 ..       9      45 ..       4      48 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
      HTH_23  6 eRlr.illllae..GlsvreIAreLgvsrrTvyrwlk 39
                +Rl  +l+ ++e  Gl+ +++A+e + +r+T++r+ +
  KIR65501.1  9 RRLGiALRTHREaaGLTLEAAADEINSTRSTLSRYEN 45
                45552455555599********************976 PP

>> Sigma54_DBD  Sigma-54, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.6e-05      0.29      48      90 ..      22      64 ..      14      78 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.6e-05
                 XXXXHHHHHTTSSSXHHHHHHHHHHXEEEXSSXEEECSCCXXX CS
  Sigma54_DBD 48 rpltlrevaealelhesTvSRvvsnkyiktprGvfelkafFss 90
                   ltl+  a++++  +sT+SR  + +++ +p  v  l +++  
   KIR65501.1 22 AGLTLEAAADEINSTRSTLSRYENAQTLISPATVRALLTLYGV 64
                 579*************************999999888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2048.57
//
Query:       KIR65502.1  [L=67]
Description: hypothetical protein TK50_08895 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.086   11.9   0.2      0.096   11.7   0.2    1.0  1  DUF5575   Family of unknown function (DUF5575)


Domain annotation for each model (and alignments):
>> DUF5575  Family of unknown function (DUF5575)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   5.3e-06     0.096      42      83 ..      10      51 ..       4      60 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.3e-06
     DUF5575 42 lakcrwasapplytlidvlkysyvrlvckdvrapsklavgep 83
                +++crw + p l +  d+  ++++  vc+d  +  +++  ep
  KIR65502.1 10 VSRCRWCAHPVLRDNDDAWIHAHLAYVCRDRSGGLAATTAEP 51
                79****************************776644443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 577.78
//
Query:       KIR65503.1  [L=71]
Description: hypothetical protein TK50_08900 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 565.40
//
Query:       KIR65504.1  [L=365]
Description: D-alanine--D-alanine ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-64  216.6   0.0    3.2e-64  216.2   0.0    1.1  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    1.2e-30  106.0   0.0    2.1e-30  105.2   0.0    1.4  1  Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
    2.8e-09   36.8   0.0    3.3e-08   33.3   0.0    2.0  1  ATP-grasp        ATP-grasp domain
    0.00027   20.5   0.0       0.16   11.5   0.0    2.1  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    0.00075   19.1   0.0     0.0026   17.4   0.0    2.0  1  ATP-grasp_4      ATP-grasp domain
     0.0018   18.4   0.0      0.025   14.7   0.0    2.4  2  ATP-grasp_3      ATP-grasp domain
     0.0089   15.3   0.0        2.3    7.4   0.0    2.1  2  ATPgrasp_ST      Sugar-transfer associated ATP-grasp
  ------ inclusion threshold ------
       0.13   11.4   0.0       0.28   10.3   0.0    1.4  2  TTL              Tubulin-tyrosine ligase family


Domain annotation for each model (and alignments):
>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.2   0.0   1.4e-67   3.2e-64       1     203 [.     154     354 ..     154     355 .. 0.93

  Alignments for each domain:
  == domain 1  score: 216.2 bits;  conditional E-value: 1.4e-67
                      HHHHTT--B--EEEEETTHHCH-H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--ESEEEEEEEEETS CS
  Dala_Dala_lig_C   1 llkaaGlpvvpyvvlekeeakeekkellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkydekvlvEeaiegreievavlgne 94 
                      l++a G+pv py+vl++  + +e+       +++lg+pvfVKp+r+GSS+G++kv  +++l++a+++a + d kvlvE ai gre+e++vl+ e
       KIR65504.1 154 LCAAEGIPVGPYAVLRSGVTLSEE------DKQRLGLPVFVKPSRAGSSFGITKVDDWADLEAAVATAREIDPKVLVEGAIVGREVECGVLEGE 241
                      56789*********9988766655......689***********************************************************55 PP

                      S...CEEEEEEEEE-SS..SSS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEESS---STTSH CS
  Dala_Dala_lig_C  95 k...levsevgeivvkk..gfydyeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNtlPGfTeiSl 183
                      +    e+s++ e+++ +  ++yd+eaky  ++ ++++pa+l+++v++++qe+a++a++ald++GlaRvDff+t + +++lnE+Nt+PGfT +S+
       KIR65504.1 242 AgggAEASVLAEVRAGGdhDWYDFEAKYL-SEPEYDLPATLPDHVTRQVQEYAVRAFAALDCAGLARVDFFVTPDLDVYLNEINTMPGFTPTSM 334
                      4444899999999986655*********8.99************************************************************** PP

                      HHHHHHCTT--HHHHHHHHH CS
  Dala_Dala_lig_C 184 fpklakasGlefkkLvdqli 203
                      fp +++asGle++kLv++li
       KIR65504.1 335 FPLMWAASGLEYPKLVNRLI 354
                      *******************9 PP

>> Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   9.3e-34   2.1e-30       1     102 [.       8     136 ..       8     137 .. 0.87

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 9.3e-34
                      EEEEEEE-SSTTHHHHHHHHHHHHHHCHCCTEEEEEEEE-TTS-E..............HHHHHHHHTTHHH...................... CS
  Dala_Dala_lig_N   1 kiavlfGGkStEhevSlvsaksvlkaldkekyeviligitkegkw..............kkkaekleskekk...................... 58 
                      ++a++fGG+S Eh +S+vsa svl+ald +++ev+++git+ gkw              +           +                      
       KIR65504.1   8 RVALVFGGRSPEHGISCVSAGSVLSALDPDEFEVVPVGITRAGKWvltsgdpaqlaisaR-----------Rlpeitaeagadlvlradptgng 90 
                      699******************************************998665544433321...........24555666777888889999999 PP

                      ..TCCCCHCCCTCE--SEEEEE-TTTTTTSSHHHHHHHHTT--BSS CS
  Dala_Dala_lig_N  59 ..klkkeeekekkaeldvvfpvlhGkngEDGtlqgllellgipyvG 102
                         l+ +e  ++ a++dvvfpvlhG++gEDGt+qg+le++gipyvG
       KIR65504.1  91 llVLDPAEGPRVLADVDVVFPVLHGAYGEDGTIQGMLEMAGIPYVG 136
                      9999999999***********************************9 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.5e-11   3.3e-08       4     157 ..     158     324 ..     155     328 .. 0.73

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.5e-11
                 TT--B-EEEEECCHHHH.HHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC..GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEEEE CS
   ATP-grasp   4 lglpvprflaveskeel.eeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal..keekvivEefvpfekElsvlvvrsaeGetafypvvetv 99 
                  g+pv ++++++s   l ee  ++lglpv vK +r g++  G + v + +dle a++++   + kv+vE  +   +E+ + v   + G  a   v  +v
  KIR65504.1 158 EGIPVGPYAVLRSGVTLsEEDKQRLGLPVFVKPSRAGSS-FGITKVDDWADLEAAVATAreIDPKVLVEGAIV-GREVECGVLEGEAGGGAEASVLAEV 254
                 6899*******9998651567899********7777766.7***************99988677888887663.4444444444444444555555555 PP

                 EETTEEEEE.....EE.......CEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEE CS
   ATP-grasp 100 qedgilrls.....va.......paevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnEla 157
                 +  g+  +      +        pa+++++  ++++e+a ++ ++L+ +G+  v +Fv+ d ++++nE+ 
  KIR65504.1 255 RAGGDHDWYdfeakYLsepeydlPATLPDHVTRQVQEYAVRAFAALDCAGLARVDFFVTPDLDVYLNEIN 324
                 554444332111111122222237889999**************************************96 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   7.1e-05      0.16      34     103 ..     179     241 ..     147     248 .. 0.84
   2 !    6.9   0.0    0.0017       3.9     132     178 ..     280     325 ..     276     326 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.1e-05
                  HHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEEEEET CS
  CPSase_L_D2  34 akeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDa 103
                   +++g Pv +k++ ++   G   +++ ++l+++v++a++        ++vlve  + g +e+E+ vl  +
   KIR65504.1 179 KQRLGLPVFVKPSRAGSSFGITKVDDWADLEAAVATAREID------PKVLVEGAIVG-REVECGVLEGE 241
                  5789*******************************999988......8*****99987.99999999765 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0017
                  S--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEES CS
  CPSase_L_D2 132 tLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNt 178
                  tL d+  ++++e av++  +++  g + v+f + p + + y+ E+Nt
   KIR65504.1 280 TLPDHVTRQVQEYAVRAFAALDCAGLARVDFFVTP-DLDVYLNEINT 325
                  8999999***************************9.999999***98 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.2e-06    0.0026       2      37 ..     183     218 ..     182     328 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.2e-06
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieee 37 
                   lPv +KPs   +S+G++k+++ ++++aava+ +e 
   KIR65504.1 183 GLPVFVKPSRAGSSFGITKVDDWADLEAAVATAREI 218
                  58****************************988854 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.4   5.3e+03     129     146 ..      67      84 ..      62      93 .. 0.84
   2 !   14.7   0.0   1.1e-05     0.025       4     156 ..     148     325 ..     145     330 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.4
                  TTSTT--EEEEEEEEESS CS
  ATP-grasp_3 129 ekleglaGyvGvDlvlkd 146
                  ++l+++   +G Dlvl+ 
   KIR65504.1  67 RRLPEITAEAGADLVLRA 84 
                  6799999999*****986 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.1e-05
                  HHHHHHHHTTT.S---............-EESS--SSSEEEEESS-------B--SS--TTE.............EEEE---SEEEEEEEE....E.S CS
  ATP-grasp_3   4 KlktykkLkeagvkvP........tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve......lvqefieGkplSvsll....sdg 83 
                  K +t k   ++g++v          +l++e  ++   ++ vKp++++ + ++++v+++ ++eaa+++        lv   i G+++   +l    + g
   KIR65504.1 148 KEFTKKLCAAEGIPVGpyavlrsgVTLSEEDKQRLGLPVFVKPSRAGSSFGITKVDDWADLEAAVATAReidpkvLVEGAIVGREVECGVLegeaGGG 245
                  55555555555666534777776667888889999999************************99998878999999**********999984333457 PP

                  SSEEEEEEEEEEEET............TEEEEEEES----HHHHHHHHHHHHHTTSTT--EEEEEEEEESS..SEEEEEEES CS
  ATP-grasp_3  84 ekvlvlavnrqliekaeke........fvyaGnvtpietelkeevvelaeevvekleglaGyvGvDlvlkd.eepyviEvNP 156
                   +++vla  r+  ++ + +          y    +  + + +++v+e a ++ ++l ++aG++ vD+ ++   + y+ E+N 
   KIR65504.1 246 AEASVLAEVRAGGDHDWYDfeakylsePEYDL-PATLPDHVTRQVQEYAVRAFAAL-DCAGLARVDFFVTPdLDVYLNEINT 325
                  78999999999999988887743333222221.12233444899999999999999.*********8766438999999995 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0032       7.2      21      84 ..     147     207 ..     141     226 .. 0.84
   2 !    7.4   0.0     0.001       2.3     227     273 ..     288     334 ..     284     345 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0032
  ATPgrasp_ST  21 dKlkfkelalraglkvpkllgvikeqaeiseleafvkeleegvviKpakgsgGkGilvitered 84 
                  dK  +k+l+ ++g++v   ++v++ + ++se ++   +l + v++Kp +  +  Gi+++ +  d
   KIR65504.1 147 DKEFTKKLCAAEGIPVGP-YAVLRSGVTLSEEDKQRLGL-P-VFVKPSRAGSSFGITKVDDWAD 207
                  999**************9.*****************999.7.8999999988899998866544 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.001
  ATPgrasp_ST 227 evlelaakaaeklpglgylGwDivldeekgplllElNarpglaivqi 273
                  +v e a++a + l + g+  +D+ ++++ +++l E+N++pg +++ +
   KIR65504.1 288 QVQEYAVRAFAALDCAGLARVDFFVTPDLDVYLNEINTMPGFTPTSM 334
                  677889999999999**************************998765 PP

>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.5   3.4e+03      68      93 ..     185     210 ..     174     221 .. 0.80
   2 ?   10.3   0.0   0.00013      0.28     236     266 ..     302     332 ..     276     336 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.5
                 ----SS---XX------BSSTHHHHH CS
         TTL  68 twIvKpsasarGkgirvfnkledikk 93 
                  ++vKps    + gi+ +++++d+ +
  KIR65504.1 185 PVFVKPSRAGSSFGITKVDDWADLEA 210
                 57899999999999999999999985 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXX..XXX CS
         TTL 236 cfelyGvDilidenlkpwLlEvNasPdlkst 266
                 c  l +vD+++  +l ++L E+N++P +++t
  KIR65504.1 302 CAGLARVDFFVTPDLDVYLNEINTMPGFTPT 332
                 666889********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2783.53
//
Query:       KIR65505.1  [L=211]
Description: hypothetical protein TK50_08910 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-17   63.8   8.4    2.3e-17   63.2   8.4    1.3  1  DUF3515   Protein of unknown function (DUF3515)
  ------ inclusion threshold ------
       0.32   10.9   0.1       0.32   10.9   0.1    1.8  2  DUF1467   Protein of unknown function (DUF1467)


Domain annotation for each model (and alignments):
>> DUF3515  Protein of unknown function (DUF3515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   8.4   2.6e-21   2.3e-17       1     156 [.      39     201 ..      38     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 2.6e-21
     DUF3515   1 vvlavalvvavlvvaallsdk..............aeaepvalasvpApkadsaeCaallaalPdelgdlrraeladpapagtaaWgepegeevvlrCG 85 
                 v+++v + va +++a+l++d               ++++pv++a+    +  ++ C+al+++lP ++ dl ++++  + p+++aa+g+p+   +++ CG
  KIR65505.1  39 VAVPVTVAVAGFTFAKLTPDApaaepgpaatsagpRSTAPVEMAAPRLAERPATVCRALTSQLPSTVRDLAQRPV-TAGPEQNAAYGDPA---LTIACG 133
                 5688888888899999999999977777774444444444444444444444666******************99.6************9...****** PP

     DUF3515  86 vdrPaefteaselqevdgvqWlevsdaeagsdastwyavdrevyValtvpagagst..plqelsdaiaetlpa 156
                    P+   ++  + +v++v+W++ ++ +    a+  ++ dre++V +tvp++ g +   +  +sd++ +++p+
  KIR65505.1 134 GAEPEPG-DTDDIWVVNKVCWYAAEGPD----ATVLTTLDRETAVRVTVPRTYGAAlqWVSPISDVVIASVPS 201
                 ****875.56679***********9998....8889***************6554332677999999887775 PP

>> DUF1467  Protein of unknown function (DUF1467)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   3.6e-05      0.32      38      74 ..      16      53 ..       3      57 .. 0.74
   2 ?   -2.3   0.2      0.49   4.4e+03      37      52 ..      70      85 ..      63      97 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.6e-05
     DUF1467 38 pGtdasAParprllrk.vlitTivaavvfalvlliils 74
                +  da+AP+r r  r  +l++T+va+ v+++v++ + +
  KIR65505.1 16 TSDDAGAPRRDRANRSaALLATLVAVPVTVAVAGFTFA 53
                34589*******998626899*******9999887665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.49
     DUF1467 37 vpGtdasAParprllr 52
                ++G  + AP+++   r
  KIR65505.1 70 SAGPRSTAPVEMAAPR 85
                6788899999877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1605.85
//
Query:       KIR65506.1  [L=77]
Description: AsnC family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-09   38.2   0.1    1.2e-09   38.0   0.1    1.0  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
     0.0086   16.1   0.1      0.012   15.7   0.1    1.1  1  NapD            NapD protein
  ------ inclusion threshold ------
      0.097   12.6   0.0      0.098   12.6   0.0    1.2  1  GYD             GYD domain


Domain annotation for each model (and alignments):
>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.1     2e-13   1.2e-09       1      72 [.       6      74 ..       6      76 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 2e-13
                    EEEEE-GGGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEE CS
  AsnC_trans_reg  1 vlvslepghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsiv 72
                    +l+++e g+    ++++  + +lp Vv + +vtG+yd ++   +  +++l ++++  ++ +pg++rt t  v
      KIR65506.1  6 ILIQTEVGR---ARDVAGLIGDLPGVVRVDAVTGPYDVVVLTEANTVDELGKLIVSNVQMVPGITRTLTCSV 74
                    689999999...9******************************************************88766 PP

>> NapD  NapD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   1.9e-06     0.012       6      65 ..       6      67 ..       5      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.9e-06
        NapD  6 lvVqarperlaavkaalaalpgv.EvhasdeegklVvviEaesedeladtiea.iealpgVl 65
                +++q+  +r  +v+  + +lpgv  v a+++   +Vv  Ea+++del + i + ++ +pg+ 
  KIR65506.1  6 ILIQTEVGRARDVAGLIGDLPGVvRVDAVTGPYDVVVLTEANTVDELGKLIVSnVQMVPGIT 67
                689******************96378888889*****************8865599999986 PP

>> GYD  GYD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.6e-05     0.098      38      61 ..      29      52 ..       4      70 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.6e-05
         GYD 38 eslyatlGeyDvvvivEapDdeta 61
                  + a++G+yDvvv++Ea+  ++ 
  KIR65506.1 29 VRVDAVTGPYDVVVLTEANTVDEL 52
                46889*************976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 564.16
//
Query:       KIR65507.1  [L=312]
Description: thiamine monophosphate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-22   78.4   5.5    7.4e-22   77.8   3.8    2.1  2  AIRS      AIR synthase related protein, N-terminal domain
    9.4e-07   29.1   3.1    1.5e-06   28.5   0.2    2.6  3  AIRS_C    AIR synthase related protein, C-terminal domain


Domain annotation for each model (and alignments):
>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   3.8   8.2e-26   7.4e-22       2      92 ..      40     140 ..      31     142 .. 0.94
   2 ?   -0.9   0.0      0.29   2.6e+03      56      71 ..     239     254 ..     201     271 .. 0.68

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 8.2e-26
                 SSEEEEEEEEEE.EECCTCCCC.........HHHHHHHHHHHHHHTTTEEEEEEEEEEEEC......HHHHHHHHHHHHHHHTT-EEEEEEEEEESSEE CS
        AIRS   2 Daavvvttdshnrpvlvepvhf.........iGakavavnlsDlaamGArPlalllslalp......wleevvrglaeaaeelgvplvgGdtsfsnept 85 
                 Da vv++td     vlve++hf         +G++a+a+nl D+aamGA+P+all++l++p      w+ee+++gl++ a+ +g+++vgGd+s s+ +t
  KIR65507.1  40 DARVVASTD-----VLVEGRHFrrdwsaardVGHRAAAANLADIAAMGATPTALLVALCMPadldptWAEELADGLGAEAATVGASVVGGDMSASPTLT 133
                 45589****.....************************************************************************************* PP

                 EEEEEEE CS
        AIRS  86 isvtavG 92 
                 i+vta+G
  KIR65507.1 134 IAVTALG 140
                 ******9 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHHTT- CS
        AIRS  56 eevvrglaeaaeelgv 71 
                  ev r++++aa++lgv
  KIR65507.1 239 FEVPRQMRDAAQALGV 254
                 4666778888888877 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.42   3.8e+03      59      81 ..      58      80 ..      45      91 .. 0.78
   2 ?   -2.2   0.2      0.44     4e+03     117     146 ..      92     121 ..      70     128 .. 0.68
   3 !   28.5   0.2   1.6e-10   1.5e-06       1     122 [.     154     266 ..     154     299 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.42
                TTECEEEE--TTHHHHHHHHHHH CS
      AIRS_C 59 glvkaahDvTgGGLlgalaemap 81
                 +++aa+Dv++   + +la +a+
  KIR65507.1 58 RDWSAARDVGHRAAAANLADIAA 80
                57789999999888888877775 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.44
                 EEEEHGGH.HHHHHHHHHTTCCCEEEEEEEE CS
      AIRS_C 117 vavppeea.davlaileeeglpeaavIGevt 146
                 ++ p++ +  ++ ++++  g  eaa +G  +
  KIR65507.1  92 LCMPADLDpTWAEELADGLGA-EAATVGASV 121
                 444555557777788888877.788888655 PP

  == domain 3  score: 28.5 bits;  conditional E-value: 1.6e-10
                 STTEEEEEEETSSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHHHTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHHHHH CS
      AIRS_C   1 kpGdvliltgslGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaalkglvkaahDvTgGGLlgalaemapasgvgaeidldkvpifde 99 
                 +pG v+ l g +G  +ag+    +++++ +l      l+++++ p + y++   aa+  +++a+ Dv++ GLl +l  +a+asgvg+ +  d+ ++  +
  KIR65507.1 154 RPGHVVALAGRSGYAAAGYTVLSRGFRTPKL------LVEAYRRPEVPYAAGPHAAR-LGATAMIDVSD-GLLADLGHVARASGVGIDVRRDAFEVPRQ 244
                 79****************8777777777765......79999999999988666664.6**********.8*********************6666665 PP

                 HHHHHHHHHCSTTTEEEEEEEHG CS
      AIRS_C 100 lesplemllsensGrllvavppe 122
                    ++  +l  +    ++a   +
  KIR65507.1 245 M-RDAAQALGVDPYSWILAGGDD 266
                 4.334444444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2363.42
//
Query:       KIR65508.1  [L=155]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-14   54.1   0.1    2.1e-14   53.8   0.1    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.4e-10   41.2   0.0    1.8e-10   40.8   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    5.1e-10   39.6   0.0    7.3e-10   39.1   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    5.7e-06   26.2   0.0    8.2e-06   25.7   0.0    1.2  1  FR47             FR47-like protein
     0.0002   22.0   0.0    0.00022   21.9   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    0.00032   20.7   0.1    0.00086   19.4   0.0    1.7  2  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
      0.034   14.2   0.0      0.048   13.8   0.0    1.3  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
       0.16   12.0   0.0       0.26   11.3   0.0    1.3  1  Acetyltransf_13  ESCO1/2 acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.1   9.4e-18   2.1e-14      10     117 .]      29     133 ..      20     133 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 9.4e-18
                     HHTHHHHHHHHHHHHHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETT CS
  Acetyltransf_1  10 esffppnedaseeefeesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveed 104
                     + +     d+++++    f  +++ +lva+  ge++G+ + +   d +g++a++ +++ sp++rg+G+++a l a+e+ are+g k +vl++ + 
      KIR65508.1  29 RRYGGSGDDTPVDA--AEFVPPHGAFLVAYLAGEPVGCGGWRSHGD-DGETAELKRMYTSPQARGRGVARAVLAAVERSAREHGRKQLVLECGDK 120
                     55555555666666..444557779999***********9999999.9***********************************9999******** PP

                     EHHHHHHHHHTTE CS
  Acetyltransf_1 105 ndaairlYeklGF 117
                     +  ai+lY   G+
      KIR65508.1 121 QPEAIALYHAAGY 133
                     ********87997 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0     8e-14   1.8e-10      32     109 ..      51     136 ..      42     144 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 8e-14
  Acetyltransf_10  32 lllvaeeggkivGvielrdgs......hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkav 109
                       +lva+  g++vG+++ r+++      ++ +++ +p++rg+G+++a l ave+ a+++g k+  l++  ++ +a+++Y+  G++++
       KIR65508.1  51 AFLVAYLAGEPVGCGGWRSHGddgetaELKRMYTSPQARGRGVARAVLAAVERSAREHGRKQlVLECGDKQpEAIALYHAAGYERI 136
                      6899***********9977777889*********************************99989999865555***********987 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   3.2e-13   7.3e-10       2      76 .]      49     135 ..      48     135 .. 0.76

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 3.2e-13
                     TEEEEEEEETTEEEEEEEEEEES.....TCTEEEEE-GGGTTSSHHHHHHHH....TT.SEEEEE.EEEE...THH.HHHHHHHHTTEEE CS
  Acetyltransf_7   2 kgevfVaeddgkivGfialslld.....aeitrlaVdpeyrgkGiGraLlea....ae.kgiile.qlel...nae.kaikfYeklGFee 76 
                     +g ++Va+  g++vG+ +   ++     ae++r++++p++rg+G++ra l+a    a+ +g     ql l   +++ +ai++Y   G+e+
      KIR65508.1  49 HGAFLVAYLAGEPVGCGGWRSHGddgetAELKRMYTSPQARGRGVARAVLAAversAReHG---RkQLVLecgDKQpEAIALYHAAGYER 135
                     6789***********988777769999888888*****************98554311455...22333344533359**********85 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   3.7e-09   8.2e-06      15      80 ..      67     136 ..      57     142 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3.7e-09
                 EEEE-TTS...SEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EE.EEEETT-HHHHHHHHHHT-EEE CS
        FR47  15 wilrkdgg...elgalqvlpehrrrGlgsrlvkalakeiaergktvl.lvvvasNtpsirlyeklGfeki 80 
                 w+ + d+g   el  +++ p++r+rG ++ + +a+ +  +e g + l l  + +  ++i+ly + G+e i
  KIR65508.1  67 WRSHGDDGetaELKRMYTSPQARGRGVARAVLAAVERSAREHGRKQLvLECGDKQPEAIALYHAAGYERI 136
                 666666542227999**************************8866550567888889**********987 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   9.8e-08   0.00022      57     137 ..      53     133 ..      11     134 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 9.8e-08
  Acetyltransf_3  57 aivlkdtgv.iGsvglrdleeedeeaelgymla.psfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     ++   ++ + +G+ g r+  ++ e+ael  m   p+++g+G+a+ +++a+ + a +e+g ++lv ++  + +  i+++  +G+
      KIR65508.1  53 LVAYLAG-EpVGCGGWRSHGDDGETAELKRMYTsPQARGRGVARAVLAAVERSA-REHGRKQLVLECGDKQPEAIALYHAAGY 133
                     4433444.449******99999999****9988566****************99.8888**************9999999987 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.8     4e+03      42      53 ..      16      27 ..      14      30 .. 0.84
   2 !   19.4   0.0   3.8e-07   0.00086      21      63 ..      73     116 ..      52     118 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.8
  Acetyltransf_CG 42 AkkLvkaaldda 53
                     A++L++aal d 
       KIR65508.1 16 AQELIRAALADL 27
                     8999***99875 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 3.8e-07
  Acetyltransf_CG  21 kegvldfthTeVpeelrGkGiAkkLvkaalddareeglk.vvpt 63 
                      ++++ ++   +++++ rG+G+A++   a+   are+g k  v+ 
       KIR65508.1  73 DGETAELKRMYTSPQARGRGVARAVLAAVERSAREHGRKqLVLE 116
                      34489999*****************************8515555 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.1e-05     0.048      68     127 ..      71     135 ..      53     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.1e-05
                     TEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--.....SSHHHHHTTT-EE CS
  Acetyltransf_9  68 GktlkaagvtgVavapehrgrgvlskLlaraleemreegqplsllfP.....ssipiYrrfGyei 127
                     G   ++a +    + p+ rgrgv+++ la++ + +re+g +  +l        +i++Y+  Gye 
      KIR65508.1  71 GDDGETAELKRMYTSPQARGRGVARAVLAAVERSAREHGRKQLVLECgdkqpEAIALYHAAGYER 135
                     55556666667789************************988888865465558899999999986 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012      0.26       8      31 ..      80     103 ..      78     113 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
  Acetyltransf_13   8 sriWvssshRrkgiAtkLldaare 31 
                      +r+++s+++R +g+A++ l a+ +
       KIR65508.1  80 KRMYTSPQARGRGVARAVLAAVER 103
                      69****************998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1252.88
//
Query:       KIR65509.1  [L=418]
Description: biotin carboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-23   80.9   3.8    1.6e-22   79.5   3.8    1.8  1  LAL_C2       L-amino acid ligase C-terminal domain 2
    1.5e-15   57.2   0.0    2.3e-15   56.5   0.0    1.2  1  ATP-grasp_4  ATP-grasp domain
    0.00018   21.4   0.0     0.0011   18.8   0.0    1.9  2  GARS_A       Phosphoribosylglycinamide synthetase, ATP-grasp 
    0.00029   20.9   0.0    0.00041   20.4   0.0    1.3  1  ATP-grasp_3  ATP-grasp domain
  ------ inclusion threshold ------
      0.027   14.0   0.0      0.038   13.5   0.0    1.3  1  CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP bindin


Domain annotation for each model (and alignments):
>> LAL_C2  L-amino acid ligase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   3.8   4.4e-26   1.6e-22       2      77 ..     343     417 ..     342     418 .] 0.98

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 4.4e-26
      LAL_C2   2 fltaprpGrlkaveGleearalpgvveveltvkpGdevrpprssgdrlGyviatgdtaeeaeaaaeeaaaeiriev 77 
                 fl+a+ pG++++veGl  ar++pgv+ev+l  ++G++v p++ssg r G+v+a g +++eae+aa++aaaeir++v
  KIR65509.1 343 FLLAD-PGTVTGVEGLRPARRVPGVLEVQLDTAVGATVAPVTSSGRRSGHVLAWGVDPAEAERAARAAAAEIRVTV 417
                 9999*.********************************************************************98 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   6.5e-19   2.3e-15       5     158 ..     157     304 ..     154     306 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 6.5e-19
  ATP-grasp_4   5 vviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilnilkkefaseedvsdrlyvts 102
                  +v+KP+  ++SlGV+ + +++e  aa aa+ +   +a  e  ++ +  +++l E++++G E +v++++  +Ge ++ n+++k+ +  +  +++ ++++
   KIR65509.1 157 CVLKPTRRSGSLGVRLVADPAEIPAAWAATAAP--EAPPEATDRGL-PTQVLAEQVLDGREHSVELLV-ADGEVIFGNVTDKRVLPGPLPVETGHTVP 250
                  9****************************9977..44444455556.89*******************.9*******************99******* PP

  ATP-grasp_4 103 akvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnplrfaglcs 158
                  +++     ++l ++  ++ a++g++ +++H E  v + g  +++E ++ r+ g ++
   KIR65509.1 251 SALPGAARRDLLDAAGRLCAAAGFRTGVLHSEWIVVD-GVPHLVECAA-RLPGDMI 304
                  ********************************99985.889999*987.5555544 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     3e-07    0.0011       2     106 ..     119     227 ..     118     253 .. 0.78
   2 ?   -0.0   0.0      0.18   6.4e+02     166     189 ..     276     299 ..     263     303 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3e-07
                 BHHHHHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCC.....SSEEEEE---SEEEE CS
      GARS_A   2 sKsfakdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeag.....ekvviEelleGeEvs 95 
                 +K+ ++ l ++ag+p + ye +  p+ea e+ ++++++  V+K+ + ++  gv ++++ +e  +a +     ++  ea+     ++v+ E++l+G E s
  KIR65509.1 119 DKHRMRLLAADAGLPNPAYELVGGPAEAVEFARRHGDRC-VLKPTRRSGSLGVRLVADPAEIPAAWAATAAPEAPPEATdrglpTQVLAEQVLDGREHS 216
                 788899999*****************************9.**************99888775444444444444444431112279************* PP

                 EEEEECTTEEE CS
      GARS_A  96 llalvdgktvk 106
                 +  lv   +v+
  KIR65509.1 217 VELLVADGEVI 227
                 *9888655554 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.18
                 EEEEEEEEEEETTEEEEEEEESS- CS
      GARS_A 166 kGvLyaglmlvedgpkvlefnvRf 189
                 +GvL+++ ++v+  p+++e  +R 
  KIR65509.1 276 TGVLHSEWIVVDGVPHLVECAARL 299
                 6**********999*****99995 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.1e-07   0.00041       3     159 ..     119     300 ..     117     302 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.1e-07
                  SHHHHHHHHTTT.S---..........-EE.SS--SSSEEEEESS-------B--SS--TTE........................EEEE---SEEEE CS
  ATP-grasp_3   3 dKlktykkLkeagvkvP......tkleaee.leeeekklvvKprdGaggesvrvveekeeaeaaieeve.................lvqefieGkplS 76 
                  dK ++     +ag+++P        +ea e +++  +++v+Kp + +g+ +vr+v +  e  aa + ++                 l+ + ++G+++S
   KIR65509.1 119 DKHRMRLLAADAGLPNPayelvgGPAEAVEfARRHGDRCVLKPTRRSGSLGVRLVADPAEIPAAWAATAapeappeatdrglptqvLAEQVLDGREHS 216
                  565555555666777777776664444444155669**********************99998888877999************************** PP

                  EEEEE.SSSEEEEEEEEEEEET....TEEEEEEES----H..HHHHHHHHHHHHTTSTT--EEEEEEEEESS.SEEEEEEESS-- CS
  ATP-grasp_3  77 vsllsdgekvlvlavnrqliekaekefvyaGnvtpietel..keevvelaeevvekleglaGyvGvDlvlkdeepyviEvNPRlt 159
                  v+ll+   +v +  v ++++   +   v +G ++p+      ++++ ++a +++++     G++  + ++ d+ p+++E  +Rl 
   KIR65509.1 217 VELLVADGEVIFGNVTDKRVL-PGPLPVETGHTVPSALPGaaRRDLLDAAGRLCAAAGFRTGVLHSEWIVVDGVPHLVECAARLP 300
                  *****9999999999999994.56669999**99998876668999999999999995556888889999999999999988875 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.1e-05     0.038      25      94 ..     141     215 ..     119     275 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
                  SSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHH.HHHHHHHHHST....S-EEEEE--SSSEE CS
  CPSase_L_D2  25 etleealaiakeigyPviikaafglGGkGmrvarneeelaelvkk.alaeakaafgn....kqvlvekslkgpke 94 
                      ea+++a+++g  +++k++   G +G r++ + +e+ ++ ++ a  ea+   ++     qvl e+ l+g  +
   KIR65509.1 141 GGPAEAVEFARRHGDRCVLKPTRRSGSLGVRLVADPAEIPAAWAAtAAPEAPPEATDrglpTQVLAEQVLDGREH 215
                  56689**********************************987654144455433222122257888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2954.03
//
Query:       KIR65510.1  [L=63]
Description: 50S ribosomal protein L28 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-23   82.3   3.2    2.5e-23   82.0   3.2    1.0  1  Ribosomal_L28  Ribosomal L28 family
  ------ inclusion threshold ------
      0.045   13.8   0.2      0.052   13.6   0.2    1.1  1  Epiglycanin_C  Mucin, catalytic, TM and cytoplasmic tail regi


Domain annotation for each model (and alignments):
>> Ribosomal_L28  Ribosomal L28 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   3.2   2.8e-27   2.5e-23       2      58 ..       4      59 ..       3      60 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 2.8e-27
                   --TTT------------S-..-SSS-BTTEEEEEEEE.TTTEEEEEEEEHHHHHH-- CS
  Ribosomal_L28  2 vCeltGkkpqfGnnvshsknkTkRtwkPNlqkvrlwseelgrkvrikvstkcLRtid 58
                   vC+++Gk+p fG+nvshs+++T+R+w+PN+q+vr     +g+++++kv+t+c+++++
     KIR65510.1  4 VCDVCGKGPGFGHNVSHSHRRTNRRWNPNIQSVRTPA-GGGTTKKLKVCTSCIKAGK 59
                   8************************************.69**************996 PP

>> Epiglycanin_C  Mucin, catalytic, TM and cytoplasmic tail region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   5.8e-06     0.052      64      95 ..       8      38 ..       3      45 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.8e-06
  Epiglycanin_C 64 lGlgyGvghglshrprwspdsvwrrpgssval 95
                    G+g+G gh++sh +++ +++ w+ +++sv  
     KIR65510.1  8 CGKGPGFGHNVSH-SHRRTNRRWNPNIQSVRT 38
                   599**********.78889999**99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 508.54
//
Query:       KIR65511.1  [L=549]
Description: Dak phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-85  285.4   0.0    5.9e-85  285.1   0.0    1.1  1  Dak1_2          Dihydroxyacetone kinase family
    2.2e-32  112.3  10.6    2.2e-32  112.3  10.6    2.1  2  Dak2            DAK2 domain
  ------ inclusion threshold ------
      0.062   13.6   1.0       0.15   12.3   0.1    2.1  2  TrkA_N          TrkA-N domain
       0.07   13.1   0.1       0.18   11.8   0.1    1.6  1  Ribosomal_S28e  Ribosomal protein S28e


Domain annotation for each model (and alignments):
>> Dak1_2  Dihydroxyacetone kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.1   0.0   1.3e-88   5.9e-85       2     313 .]     237     549 .]     236     549 .] 0.95

  Alignments for each domain:
  == domain 1  score: 285.1 bits;  conditional E-value: 1.3e-88
      Dak1_2   2 fgYCtefllklekaeefdeeklreeLeelGDSlvvvgdde......lvkVHvHtndPgavleaalkyGelskikienMreqheellk.ktdseadepke 93 
                 + Y+++fll+ +++   +++++r++L+ lGDSlvvvgd++      +++VHvH+nd ga++ea++++G++++i+++++++q  +  +   +++ +++  
  KIR65511.1 237 YAYEVQFLLDADAD---AVARMRQTLAGLGDSLVVVGDGAtdaasaTWNVHVHVNDVGAAVEAGVEAGRPHRISVTRFADQPPAASAdAVAAHGTAAPA 332
                 99********9999...*********************99999***************************************88885333333333333 PP

      Dak1_2  94 ekeeavvavaageglaelfkslgvdevieggqtmnPstedllkaiekvnakevivLpnnkniilaaeqaaelaedk..nvvviptktivqGlaallvfd 190
                    +a v+va+g g+aelf+++g ++v++g    nPst +ll+ai+++ a+ v+vLpn+ n+ + a++aa  a++   +v v+pt+++vq+laal+v d
  KIR65511.1 333 GDGRAAVVVASGAGIAELFTGEG-ATVVPG----NPSTGELLDAIRATAAARVVVLPNDPNTQAVANAAAREAHALgvRVSVVPTRSPVQALAALAVRD 426
                 3345*******************.9****9....***************************************877856******************** PP

      Dak1_2 191 persleenveamaeaakavktgevtyAvrdtkidggeikkgdllgiadgkivvvgkdleeaakkllkklldedselvtilygedvseeeaealaeklee 289
                 p+r++ ++v amaeaa+a++++ev  A r++ + +g +++gd+l++++g++ ++g+dl ++++++++++l  ++elvt+l g+d+ e  a+a+ae++ +
  KIR65511.1 427 PQRRFADDVIAMAEAAGACRYAEVCWASREALTVAGPCRPGDVLALVEGEVHLIGADLADTCTAVVDRMLGGGGELVTLLSGADAPEGLADAVAEHVAR 525
                 *************************************************************************************************** PP

      Dak1_2 290 kypdvevevyeGgqplyvylisvE 313
                 ++p vev+ y+Ggqp+y++l++vE
  KIR65511.1 526 RWPFVEVQAYAGGQPHYPLLVGVE 549
                 ***********************8 PP

>> Dak2  DAK2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3  10.6   4.9e-36   2.2e-32       1     173 [.      35     204 ..      35     205 .. 0.96
   2 ?   -3.0   0.1       1.3     6e+03      98     131 ..     367     401 ..     357     403 .. 0.62

  Alignments for each domain:
  == domain 1  score: 112.3 bits;  conditional E-value: 4.9e-36
                 TTS-S-HHHHHHHHHHHHHHHHHC-.......--SSHHHHHHHHHHHHHHH--STHHHHHHHHHHHHHHHC.....TT---HHHHHHHHH.HHHHHHH- CS
        Dak2   1 pvGDGDtGtnmargaeavlkaleel.......eeaslaevlkalakallsgagGtsGvlysqflralakalkekeeldaedlaaalkaal.eaiqavgk 91 
                 pv+DGDtGtn+  +++++++al  +        ++  +++l+ +a+++l ga+G+sGv++sq+lr+la++l+ + ++   +laaal +a+ +a++av  
  KIR65511.1  35 PVPDGDTGTNLVLTLTSAQQALAMDlatlpdgGSTAHGHALRLMARGALLGARGNSGVILSQILRGLADTLAAAPAVRGRQLAAALGDATaAAYSAV-- 131
                 79*******************998888888766777889***************************************************9999999.. PP

                 --TTSSSTHHHHHHHHHHHHT...........T---HHHHHHHHHHCCS---SSGGGGGGGGGTTS--HHHHHHHHHHHHHH CS
        Dak2  92 arpgdkTmlDvlrpavealekakdgedlkealekaakaaekgaeaTkellaklgrAsylgerslgvvDpGAvglalileala 173
                 a+p+++T+l v+++a++a+ +a++ +dl +++++aa aa +++++T+e+l+ l rA        gvvD+G++gl+l+l+al+
  KIR65511.1 132 AQPVEGTVLSVVAAAARAAGSADS-DDLPTVARAAAGAAAEALARTPEQLPALARA--------GVVDAGGRGLCLLLDALV 204
                 *********************988.9******************************........***************997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.3
                 STHHHHHHHHHHHHT............T---HHHH CS
        Dak2  98 TmlDvlrpavealekakd.gedlkealekaakaae 131
                  +lD++r+++ a       + ++++++++aa++a+
  KIR65511.1 367 ELLDAIRATAAARVVVLPnDPNTQAVANAAAREAH 401
                 57778777777666644435555666666666654 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.6   7.3e+03      92     106 ..     160     174 ..     141     190 .. 0.51
   2 ?   12.3   0.1   3.3e-05      0.15      24      89 ..     338     403 ..     325     426 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
                 EEEEESSGGGHHHHH CS
      TrkA_N  92 iiaraqdpehaellk 106
                 ++ara   + ae+l 
  KIR65511.1 160 TVARAAAGAAAEALA 174
                 444444444333332 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.3e-05
                 EEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSS CS
      TrkA_N  24 vvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpk 89 
                  vv+ +    +e ++ eg++vv g+++  e+L+++ +  a  v+++ +d  + ++a ++a+e +  
  KIR65511.1 338 AVVVASGAGIAELFTGEGATVVPGNPSTGELLDAIRATAAARVVVLPNDPNTQAVANAAAREAHAL 403
                 5677777778889999************************99999999999999999999998776 PP

>> Ribosomal_S28e  Ribosomal protein S28e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1     4e-05      0.18      42      58 ..     460     476 ..     456     477 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4e-05
                     EES---TT-EEEES--S CS
  Ribosomal_S28e  42 VkGPvreGDiLtLlEte 58 
                     V GP+r GD+L+L E e
      KIR65511.1 460 VAGPCRPGDVLALVEGE 476
                     99************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4172.68
//
Query:       KIR65512.1  [L=743]
Description: ATP-dependent DNA helicase RecG [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-21   76.9   0.0      2e-18   66.7   0.0    2.5  2  Helicase_C       Helicase conserved C-terminal domain
    2.1e-14   53.7   0.0    3.5e-14   53.0   0.0    1.3  1  DEAD             DEAD/DEAH box helicase
    6.9e-09   35.5   0.0    1.3e-08   34.7   0.0    1.3  1  RecG_wedge       RecG wedge domain
    6.6e-08   32.7   0.0    3.8e-07   30.3   0.0    1.9  1  ResIII           Type III restriction enzyme, res subunit
    4.5e-05   23.3   0.1    9.8e-05   22.3   0.1    1.6  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
      0.024   14.4   5.9        0.1   12.3   5.9    2.1  1  AAA_30           AAA domain
      0.088   13.1   0.1       0.44   10.8   0.1    2.1  1  AAA_22           AAA domain
       0.12   11.3   0.2       0.23   10.4   0.1    1.4  2  TrwB_AAD_bind    Type IV secretion-system coupling protein DN


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0022       4.9      41      89 ..     366     415 ..     316     426 .. 0.87
   2 !   66.7   0.0   8.9e-22     2e-18      40     110 ..     559     630 ..     536     631 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0022
                 STEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGG.GTSSSTSTTESEEE CS
  Helicase_C  41 ikvavlhgelpqnereeileqfnkgesdvLiatdv.aerGidipkvnlVi 89 
                  +v  ++g+l +  r+++l++  +g+  +++ t + + +G+d+ ++ lV+
  KIR65512.1 366 TSVELVTGSLGAAARRRALAEVAAGRAGIVLGTHAlLYEGVDFADLGLVV 415
                 5677899*********************7766665289******999997 PP

  == domain 2  score: 66.7 bits;  conditional E-value: 8.9e-22
                 TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.SSHHHHHHHHTTSSST CS
  Helicase_C  40 gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.rnvtsyiqriGRtgRa 110
                 g+++ +lhg+lp++e+++++++f +ge dvL+at+v+e G+++p+++++i +d++ ++v++++q +GR+gR+
  KIR65512.1 559 GLRIGILHGRLPADEKDAVMRAFADGELDVLVATTVIEVGVNVPNATVMIVLDADrFGVSQLHQLRGRVGRG 630
                 899****************************************************778*************7 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   1.6e-17   3.5e-14      18     173 ..     302     452 ..     285     455 .. 0.84

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 1.6e-17
                 EEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST...........SEEEEEET...TSSHHHHHHHHHTT.CSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxx...xxxxxxxxxxxxxx.xxxx RF
        DEAD  18 lvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid...........lrvlliig...gvaardqlskldng.vdiv 101
                 l+++e+GsGKT ++l ++lq v     + g +a +++Pt+ La q+++ +  ++ ++             +v+l++g     a+r+ l+++ +g + iv
  KIR65512.1 302 LLQGEVGSGKTVVALRAMLQVV-----DAGGQAALLAPTEVLAAQHHRGILDLLGPLAragelgaadgaTSVELVTGslgAAARRRALAEVAAGrAGIV 395
                 7899***************999.....8899************************6444667777778856666644442778888899998777**** PP

                 EEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
        DEAD 102 vgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kdv 173
                 +gt+  l + ++     + ++ ++V+DE +r+  + ++d +++ + q          +  v+v++AT+  ++v
  KIR65512.1 396 LGTHALLYEGVD-----FADLGLVVVDEQHRFGVE-QRDALRAKADQP--------PH--VLVMTATPIpRTV 452
                 ****99999665.....*****************9.889888856665........34..*******987777 PP

>> RecG_wedge  RecG wedge domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   5.6e-12   1.3e-08       6     128 ..      16     140 ..      13     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 5.6e-12
  RecG_wedge   6 kgvGekrekiLk.klgietiedllyyfPrdyedrrkivpiseikedekvtvkgklvnvek..kkissltiisavlsdgisqvl.LkWf.nqeyikkklk 99 
                 k vGek +k L+ +l+++t +dl+++fPr y++r +   i ++  +e+vtv +++   +    ++   +++   + d+ + vl  ++f nq + +++l+
  KIR65512.1  16 KLVGEKTAKALAaHLDLHTAGDLVHHFPRRYDERGEHTDIRSLDVGEQVTVLAQVRRTDVrpMRQRRGKLLEVTVGDDSGGVLtCTFFgNQAWRERELR 114
                 77*******99538*****************************************87665115666678999999999999996777789********9 PP

  RecG_wedge 100 tlkekevlvtGlvkkgefGaleiknPeie 128
                    ++  l  G v   + G+ +++ Pe  
  KIR65512.1 115 --PGRWGLFAGKV-TEFRGKRQLNGPEYV 140
                 ..88999999988.445588999999863 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.7e-10   3.8e-07       4     169 ..     278     447 ..     275     449 .. 0.73

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.7e-10
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--...... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdst 102
                 l   Q  +  ++++ l+  +  + l++ + G+GKT+va++++ ++  +g+  ++ +l+p++ l  q  + + ++l + +  +g+    d+ ++      
  KIR65512.1 278 LTGGQRAVGAEIAADLSTAHPMHRLLQGEVGSGKTVVALRAMLQVVDAGG--QAALLAPTEVLAAQHHRGILDLLGPLAR-AGELGAADGATS------ 367
                 566777778888888888888899************************99..8******************999998764.777777777666...... PP

                 .-SEEEEEHHHHHHTH....................HHHTTT-S..EEEEETGGGTTS.TTTHHH.HHT---SEEEEEESS- CS
      ResIII 103 nkkilvttiqsldadseee............eeeseellrdrfd..viiiDEaHrlgakkswrei.lekfkeavllglTATp 169
                   +++  +  ++ +++  +            + +    + d+ d  ++++DE Hr+g  ++  ++ +++ ++  +l +TATp
  KIR65512.1 368 -VELVTGSLGAAARRRALAevaagragivlgTHALLYEGVDFADlgLVVVDEQHRFGV-EQRDALrAKADQPPHVLVMTATP 447
                 .344433333333333333444444555443333333344555577************.4444444677899*********9 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   4.4e-08   9.8e-05       1      75 [.      64     141 ..      64     142 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 4.4e-08
                      EEEEEEEEEEE....EEEETTEEEEEEEETT.EEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsis....drsggkvifidlrDgt.griqvvlfreeatklaenlkeGdvvrvtGrvkrrpggelelkveeiel 75 
                      Vtv + v+++     ++  gk++ +++ D++ g +++++f  ++     +l++G +    G+v++++g+  +l+ +e+ l
       KIR65512.1  64 VTVLAQVRRTDvrpmRQRRGKLLEVTVGDDSgGVLTCTFFG-NQAWRERELRPGRWGLFAGKVTEFRGK-RQLNGPEYVL 141
                      6777788888888988999************99********.************************999.9998888765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   5.9   4.5e-05       0.1      11     114 ..     291     436 ..     277     444 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.5e-05
      AAA_30  11 ealltsgdrvavltGpAGtGKtta.lkalreaweaaggrviglAptgkaAkvLa......................eelgieastiakllkrlk..... 81 
                 + l t + +  +l+G  G+GKt + l+a+ ++++ agg+ ++lApt+  A++                        +       +++ ++ +l+     
  KIR65512.1 291 ADLSTAHPMHRLLQGEVGSGKTVVaLRAMLQVVD-AGGQAALLAPTEVLAAQHHrgildllgplaragelgaadgaT-------SVELVTGSLGaaarr 381
                 334445556889**********862677777777.66799********99998745555555555553333333221.......222222222244455 PP

      AAA_30  82 ......................grarlepgtllivDEagmvdtkqlaallkaaek 114
                                       + +++++  l++vDE    + +q +al ++a++
  KIR65512.1 382 ralaevaagragivlgthallyEGVDFADLGLVVVDEQHRFGVEQRDALRAKADQ 436
                 5566666788999999999*99668888999**********99999999998877 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1    0.0002      0.44       9     114 ..     302     432 ..     296     450 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseell.ealeqalrarav............... 91 
                 ++ Ge+G+GKT+++ r + q + +  ++   +++    +++  +  dll  l+ra +l++ + +++s el+   l  a+r+ra                
  KIR65512.1 302 LLQGEVGSGKTVVALRAMLQVVDAGGQAALLAPTEVLAAQHHRGILDLLGPLARAGELGAAD-GATSVELVtGSLGAAARRRALaevaagragivlgth 399
                 678***************99976655555444444555556667888888888888887777.555555554444444444444555555555666666 PP

      AAA_22  92 ...........ielliiDEaqhlrseealeeLrs 114
                             +l+++DE +++   e+   Lr 
  KIR65512.1 400 allyegvdfadLGLVVVDEQHRF-GVEQRDALRA 432
                 66777777777788888888888.6666555554 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       2.2     5e+03      83     110 ..     149     177 ..     149     186 .. 0.78
   2 ?   10.4   0.1    0.0001      0.23      16      49 ..     299     333 ..     289     345 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.2
  TrwB_AAD_bind  83 eikeksdfaeiAaaliped.ggssdpfWa 110
                    e++ +++++e+A alip   +  + p W+
     KIR65512.1 149 EAAANEEVEEFAGALIPVYpAAAAVPTWV 177
                    567789999*******9865677778886 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0001
  TrwB_AAD_bind  16 qhilivGttGsGKtq.alekllrairargdraivl 49 
                    +h l+ G +GsGKt+ al+++l+ + a g+ a+ +
     KIR65512.1 299 MHRLLQGEVGSGKTVvALRAMLQVVDAGGQAALLA 333
                    799***********735899999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 5603.39
//
Query:       KIR65513.1  [L=187]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-50  171.4   0.0    1.7e-50  171.2   0.0    1.0  1  Cons_hypoth95    Conserved hypothetical protein 95
    0.00078   18.9   0.0    0.00095   18.6   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0011   18.2   0.0     0.0014   17.9   0.0    1.1  1  RsmJ             Ribosomal RNA large subunit methyltransferas
     0.0034   17.1   0.2       0.41   10.3   0.0    2.1  2  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran
  ------ inclusion threshold ------
        6.7    7.0  12.7         27    5.0   4.2    2.4  2  TetR_C_6         BetI-type transcriptional repressor, C-termi


Domain annotation for each model (and alignments):
>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.2   0.0   4.7e-54   1.7e-50       1     180 [.       2     183 ..       2     185 .. 0.96

  Alignments for each domain:
  == domain 1  score: 171.2 bits;  conditional E-value: 4.7e-54
                    EEXXSCCCTTXEEEXTTXXXXXSSSHHHHHHHHHHHCCC..HCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTE CS
  Cons_hypoth95   1 lriigGkakgrkLkvlegkstRPttdrvrealFnilaae..iegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeeta 94 
                    +ri++G+++gr++++++g +tRPt+drvrealF+ ++a+  + gar+ Dl+aGsGa+glEAlSRga++++lve+d++a+++++en+++l++   +a
     KIR65513.1   2 TRIVAGTLGGRRIAAPPGAGTRPTSDRVREALFSAVQADvdLAGARFADLYAGSGAVGLEALSRGAAHVLLVESDPRAARVVRENIAALRAA-PAA 96 
                    59************************************99999***********************************************88.588 PP

                    EEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH..HHHHHHHHHTT-EEEEEEEEEEEECCSSS--.-TTEEEEEEEEETTEEEEE CS
  Cons_hypoth95  95 elkedaleallklakkkeefdivflDPPyakell.ieevlelleekkllkenalvvvetekekelpespenlelvkekkygettlal 180
                     l+  ++  +l  +  ++++d+vf DPPya  ++ + ++l++l + ++l+ +alvvve++++  +++++e+++  ++++ygettl++
     KIR65513.1  97 RLVTGKVATVLAAGPDGGPYDVVFADPPYAVPDAdVTAMLAALVDGGWLAADALVVVERSSRSGPVDWVEGVTAERSRRYGETTLWY 183
                    889999999999999***************9998899***********************************************987 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.7e-07   0.00095     141     232 ..      19     121 ..      18     147 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.7e-07
        PrmA 141 GTGtHpTTklclealeklvkege.....evlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklev......alseellkeekad 228
                 G+Gt pT     eal + v+++      ++ D+ +GSG   + a+  ga++v+ v  D+ A +v +eN++  + +   ++      ++ +  ++ +++d
  KIR65513.1  19 GAGTRPTSDRVREALFSAVQADVdlagaRFADLYAGSGAVGLEALSRGAAHVLLVESDPRAARVVRENIAALRAAPAARLvtgkvaTVLAAGPDGGPYD 117
                 7788888888777777776655323333999**************************************988777655441222222344444578888 PP

        PrmA 229 viva 232
                 v++a
  KIR65513.1 118 VVFA 121
                 8887 PP

>> RsmJ  Ribosomal RNA large subunit methyltransferase D, RlmJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     4e-07    0.0014      59     160 ..      46     151 ..      24     154 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4e-07
                 TSS--EEE-HHHHHH.HHS-TT-EEEEE---TTHHHHHHHHTTT-TTEEEES.S-H.HHHHHHS-S-TTS-EEEEE----SSCC.HHHHHHHHHHHHHH CS
        RsmJ  59 geklryYpGspllar.rllReqDrlvlteLhpkdaalLkaelakdkrvrvkk.adG.faalkaklppkekRglvliDPPyeakd.eydrvvaalrealk 153
                     ++Y+Gs  +   +l R +  ++l+e  p  a+++++++a  + + + +   G  a++ a  p      +v+ DPPy   d + ++++aal ++  
  KIR65513.1  46 ARFADLYAGSGAVGLeALSRGAAHVLLVESDPRAARVVRENIAALRAAPAARlVTGkVATVLAAGPDGGPYDVVFADPPYAVPDaDVTAMLAALVDGGW 144
                 444789*****997515679*********************998877655441344267777888888899***********9999*****99988766 PP

                 H-TTSEE CS
        RsmJ 154 Rlaqavl 160
                  +a+a +
  KIR65513.1 145 LAADALV 151
                 6666655 PP

>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00011      0.41      20      42 ..      44      66 ..      31      73 .. 0.78
   2 !    5.1   0.1    0.0045        16     178     188 ..     116     126 ..      89     133 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
                     --SEEEETT-TTSCCHHCS...S CS
  MethyltransfD12 20 kgktfvepFaGggaVffeakkqg 42
                      g +f+++ aG+gaV++ea+++g
       KIR65513.1 44 AGARFADLYAGSGAVGLEALSRG 66
                     7889**************98754 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0045
                      E.EEEE--S-T CS
  MethyltransfD12 178 ddivYlDPPYn 188
                       d+v+ DPPY+
       KIR65513.1 116 YDVVFADPPYA 126
                      48********7 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   4.2    0.0074        27      45     113 ..      24      90 ..      20      93 .. 0.82
   2 ?    4.7   4.3    0.0092        33      72      90 ..     129     147 ..      75     158 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0074
                 HHHHHHHHHHHHHHHHHHH..TTSCTTSTHHHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHH CS
    TetR_C_6  45 enyarlrsnlrallaelae..gglradadaeaaAerlaAlidGLwlraalapeeldaeraralvrrhldal 113
                  + +r+r+ l  ++++ ++  g  +ad  a   A +l Al  G +  ++++    +  ra ++vr+ ++al
  KIR65513.1  24 PTSDRVREALFSAVQADVDlaGARFADLYAGSGAVGLEALSRGAAHVLLVE----SDPRAARVVRENIAAL 90 
                 5678999999999999999999*********************98777777....3445555777777776 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0092
                 HHHHHHHHHHHHHHHHHHH CS
    TetR_C_6  72 aeaaAerlaAlidGLwlra 90 
                  ++++++laAl+dG wl a
  KIR65513.1 129 DADVTAMLAALVDGGWLAA 147
                 468999**********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1243.79
//
Query:       KIR65514.1  [L=162]
Description: phosphopantetheine adenylyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-23   81.7   0.0    6.5e-23   81.5   0.0    1.1  1  CTP_transf_like  Cytidylyltransferase-like
    0.00018   21.2   0.0    0.00023   20.9   0.0    1.2  1  Citrate_ly_lig   Citrate lyase ligase C-terminal domain
  ------ inclusion threshold ------
      0.095   12.7   0.0       0.19   11.7   0.0    1.4  1  Phage_int_SAM_6  Phage integrase SAM-like domain


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   1.1e-26   6.5e-23       2     141 ..       6     131 ..       5     133 .. 0.95

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 1.1e-26
                      EEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-SCSSTHHHHHHHHHHH.TTCTTEEEEEEESEHHHHHHHTTTTEEEEEEEHHHH CS
  CTP_transf_like   2 agGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkkkplasaeeRlemlela.kevdevisvdpweltrevlkklkpdklylvigadvl 94 
                      ++G+FDp+++GHl+++ +a++l++e +ivgv  ++++     +l+++eeR+eml++   + d+v +++++ l  ++ + +++   +l+ g +++
       KIR65514.1   6 CPGSFDPVTNGHLDIIGRAARLFDE-VIVGVLVNQSKS----GLFTVEERIEMLREVtSSYDNVRVASFRGLLVDFCRAQRAS--VLIKGLRAV 92 
                      78***********************.**********99....89*************88889999999***************..********* PP

                      HHHHCHHHHHHHHHHHHHEEEEEEHTTCEEEEEEECCTTTCSHHHHH CS
  CTP_transf_like  95 edfsewkeleeilgnvklvvvsrpekqanvllkaekrtngiSstkir 141
                      +df  ++el++   n +l++v      +++++++++ +++ Ss+ ++
       KIR65514.1  93 SDF--DYELQMAQMNIGLAGV------ETLFMPTNPLYSFLSSSLVK 131
                      ***..****************......45799999999******987 PP

>> Citrate_ly_lig  Citrate lyase ligase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.9e-08   0.00023       9      92 ..      11      98 ..       9     123 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.9e-08
  Citrate_ly_lig  9 nPftlGhryLvekaakendvvhlfvvke.dks.lfsyeerlklvkkGikdlknvtlhegsdYli..sratfPsYflkeqeevaesqae 92
                    +P t+Gh  ++ +aa+  d v++ v+ +  ks lf++eer++++++ +++ +nv + +    l+   ra   s  +k  ++v ++  e
      KIR65514.1 11 DPVTNGHLDIIGRAARLFDEVIVGVLVNqSKSgLFTVEERIEMLREVTSSYDNVRVASFRGLLVdfCRAQRASVLIKGLRAVSDFDYE 98
                    69*****************999866544033338*********************999887777223556666666666666665555 PP

>> Phage_int_SAM_6  Phage integrase SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.2e-05      0.19      48      90 ..      90     133 ..      78     140 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.2e-05
  Phage_int_SAM_6  48 ksieelekivk.eaRniGliGintyanPllklyeyliklelasl 90 
                      + +++++  ++    niGl+G++t + P   ly++l ++ ++++
       KIR65514.1  90 RAVSDFDYELQmAQMNIGLAGVETLFMPTNPLYSFLSSSLVKDV 133
                      5555555444403469*******************998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1070.83
//
Query:       KIR65515.1  [L=165]
Description: hypothetical protein TK50_08965 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0012   19.2   9.9      0.042   14.3   2.9    2.4  2  V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
     0.0019   18.3  11.2      0.056   13.5  10.3    2.1  2  ATP-synt_B    ATP synthase B/B' CF(0)
  ------ inclusion threshold ------
       0.13   12.3   3.8        1.8    8.6   3.8    2.3  1  DivIVA        DivIVA protein
        0.3   10.9   5.1        2.6    7.8   5.3    1.9  1  ERM           Ezrin/radixin/moesin family


Domain annotation for each model (and alignments):
>> V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.8   0.00036       1.6      19      44 ..      61      86 ..      50      94 .. 0.82
   2 !   14.3   2.9   9.3e-06     0.042      24      69 ..      94     139 ..      86     151 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00036
                  HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  V-ATPase_G_2 19 qrlEaArkeaereveaAeaeAarilr 44
                  + +Ea ++ea r +++ eae ar+++
    KIR65515.1 61 KIMEAGKREADRIISEGEAEHARLVS 86
                  55799999999999999999999876 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 9.3e-06
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  V-ATPase_G_2  24 ArkeaereveaAeaeAarilreAeakakalqaeyeqelaeevarir 69 
                   A +e +r +++A+aeA+r+ +e ++ +    a++eq l++  a i+
    KIR65515.1  94 AEHEGARIIAEARAEAQRLREEVDDYVDTALANFEQFLTRALASIE 139
                   6777888888888888888888888888888888888887777775 PP

>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5  10.3   1.2e-05     0.056      27     110 ..      27     115 ..      24     116 .. 0.78
   2 !   12.6   3.2   2.4e-05      0.11      62     110 ..      93     144 ..      88     151 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
  ATP-synt_B  27 vLdkReekIadeia...eAeerrkeaaallaeaeqqlkeAraeAaeiiknAkkeaekl..keeieaeaeaeaerlkesAaaeIeqekdr 110
                  + +R e+Ia+ ++   +  +  + aaall e+ + ++  ++eA++ii ++++e ++l   +ei  +ae e +r++++A+ae ++ +++
  KIR65515.1  27 CMVDRGEMIAALDElraDLPADLRRAAALLGERDKIMEAGKREADRIISEGEAEHARLvsVNEITVSAEHEGARIIAEARAEAQRLREE 115
                 5667777777544311123355678999*********************9999988752279*******************98887765 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.4e-05
  ATP-synt_B  62 eAraeAaeiiknAkkeaeklkeeiea...eaeaeaerlkesAaaeIeqekdr 110
                  A+ e a+ii++A++ea++l+ee  +    a a+ e+    A a Ie+ +d+
  KIR65515.1  93 SAEHEGARIIAEARAEAQRLREEVDDyvdTALANFEQFLTRALASIERGRDK 144
                 5999******************986511155666777778899999888876 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.8   0.00041       1.8      81     119 ..      64     119 ..      57     140 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00041
                 XXXXXXXXXXXXXXXXXXXXXXX.................XXXXXXXXXXXXXXXX CS
      DivIVA  81 anakkeaeliikeAekkaekive.................eaeeeakkiaeeieel 119
                 ++ k+ea+ ii+e e++  ++v+                 ea+ ea++++ee+++ 
  KIR65515.1  64 EAGKREADRIISEGEAEHARLVSvneitvsaehegariiaEARAEAQRLREEVDDY 119
                 55566666666666666666666666666666655555558888888888888764 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.3   0.00059       2.6      33     100 ..      51     118 ..      33     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00059
         ERM  33 etaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeser 100
                 + a lL e+ +++e  +++ ++  +e e+e +rl   +e + +  ++ +r ++ea +ea+rl+ee++ 
  KIR65515.1  51 RAAALLGERDKIMEAGKREADRIISEGEAEHARLVSVNEITVSAEHEGARIIAEARAEAQRLREEVDD 118
                 678899***********************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1228.31
//
Query:       KIR65516.1  [L=187]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-30  103.3   0.4    1.1e-29  103.0   0.4    1.2  1  YceD      Large ribosomal RNA subunit accumulation protein Yc


Domain annotation for each model (and alignments):
>> YceD  Large ribosomal RNA subunit accumulation protein YceD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.4   6.3e-34   1.1e-29       1     120 [.      70     182 ..      70     183 .. 0.93

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 6.3e-34
        YceD   1 ldgrvsatvtleCdrClepvelpldveftelfveeeeeaedeedeedeedeeeilaeedeiDlselireelllalPlkplckpdckgeklcsqcganln 99 
                 ++g+vs+ v+ eC rCl++++ +++v ++el+++e+++ +++      +++e+  +++d iDl++++r++++l+lP +plc++dc g  lc++cg + +
  KIR65516.1  70 VSGTVSGRVKGECGRCLREIDDSVAVPVQELYAYENSTTDATT-----DEDEVGRMQDDLIDLEPALRDAVVLMLPTNPLCREDCPG--LCPECGVHWD 161
                 689**********************************998884.....455555559******************************..********** PP

        YceD 100 eeecdceeekedprfaaLkkL 120
                 + + d+ +e++dpr+a L +L
  KIR65516.1 162 DLPADHSHEQIDPRWAGLSQL 182
                 *******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1302.65
//
Query:       KIR65517.1  [L=57]
Description: 50S ribosomal protein L32 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-25   86.8   5.4    8.9e-25   86.7   5.4    1.0  1  Ribosomal_L32p  Ribosomal L32p protein family
     0.0034   16.9   2.3      0.027   14.1   0.2    2.2  2  zf-tcix         Putative treble-clef, zinc-finger, Zn-binding
  ------ inclusion threshold ------
      0.021   14.2   3.9        1.6    8.1   0.6    2.2  2  zf-RanBP        Zn-finger in Ran binding protein and others
      0.069   12.6   6.4        4.5    6.8   6.6    2.1  2  zf-ribbon_3     zinc-ribbon domain
       0.22   11.7   4.6        1.2    9.3   1.1    2.2  2  Zn-ribbon_8     Zinc ribbon domain


Domain annotation for each model (and alignments):
>> Ribosomal_L32p  Ribosomal L32p protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   5.4   2.5e-28   8.9e-25       1      55 [.       2      56 ..       2      57 .] 0.98

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 2.5e-28
                    S--SS---HHHHHHHGGGT------EEEETTTCCEECTTC-BTTTTBSSSBXSXX CS
  Ribosomal_L32p  1 AVPKrKtSksrrrkRrahwklkapnlvecpncgelklpHrvcpscGyYkgrevie 55
                    AVPKrK+S+s++r+Rra+wk+++ + + cp+c+++klpH +c+ cG+Y+gr+v+e
      KIR65517.1  2 AVPKRKMSRSNTRSRRANWKATVVATTACPQCKSPKLPHAACSVCGTYNGRQVLE 56
                    9****************************************************98 PP

>> zf-tcix  Putative treble-clef, zinc-finger, Zn-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2     0.025        91      11      16 ..      28      33 ..      20      35 .. 0.73
   2 !   14.1   0.2   7.6e-06     0.027      12      22 ..      42      52 ..      41      55 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.025
     zf-tcix 11 rkCpkC 16
                 +Cp+C
  KIR65517.1 28 TACPQC 33
                689999 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 7.6e-06
     zf-tcix 12 kCpkCGtyNGt 22
                +C+ CGtyNG 
  KIR65517.1 42 ACSVCGTYNGR 52
                6*********6 PP

>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.6   0.00045       1.6      18      29 ..      27      38 ..      25      39 .. 0.87
   2 ?    7.4   0.1   0.00077       2.8       7      14 ..      43      50 ..      42      53 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00045
                SSB-TTT--BTS CS
    zf-RanBP 18 stkCvaCqapkp 29
                +t+C +C++pk 
  KIR65517.1 27 TTACPQCKSPKL 38
                689*******96 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00077
                -SSS--EE CS
    zf-RanBP  7 CskClvqN 14
                Cs+C+++N
  KIR65517.1 43 CSVCGTYN 50
                *******9 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.6    0.0013       4.5       2      24 ..      27      48 ..      26      48 .. 0.81
   2 ?    6.0   0.3    0.0022       7.9       2      11 ..      40      50 ..      39      54 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0013
  zf-ribbon_3  2 tvrCPnCGaplssddnvCpyCGt 24
                 t+ CP+C++p +    +C  CGt
   KIR65517.1 27 TTACPQCKSP-KLPHAACSVCGT 48
                 789******9.877788888875 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0022
  zf-ribbon_3  2 tvrCPnCGa.p 11
                 +  C+ CG+ +
   KIR65517.1 40 HAACSVCGTyN 50
                 678*****866 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.1   0.00033       1.2      26      35 ..      27      37 ..       7      40 .. 0.79
   2 ?    4.7   0.1    0.0091        33      26      39 ..      40      54 ..      37      55 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00033
  Zn-ribbon_8 26 ltaCPeCgs.e 35
                  taCP+C+s +
   KIR65517.1 27 TTACPQCKSpK 37
                 455****9955 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0091
  Zn-ribbon_8 26 ltaCPeCgs.evrrv 39
                   aC  Cg  + r+v
   KIR65517.1 40 HAACSVCGTyNGRQV 54
                 567999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 415.41
//
Query:       KIR65518.1  [L=285]
Description: formamidopyrimidine-DNA glycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-36  125.6   0.1    2.5e-36  124.8   0.1    1.4  1  Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-termina
    5.5e-26   90.4   0.0    8.9e-26   89.7   0.0    1.3  1  H2TH            Formamidopyrimidine-DNA glycosylase H2TH doma
    6.5e-11   41.9   5.3    1.5e-10   40.7   5.3    1.7  1  zf-FPG_IleRS    Zinc finger found in FPG and IleRS
    0.00066   18.6   0.0    0.00084   18.2   0.0    1.1  1  FbpA            Fibronectin-binding protein A N-terminus (Fbp
  ------ inclusion threshold ------
      0.076   13.2   1.4       0.17   12.1   1.4    1.5  1  Auto_anti-p27   Sjogren's syndrome/scleroderma autoantigen 1 
       0.16   12.0   1.2       0.27   11.3   1.2    1.3  1  DZR             Double zinc ribbon


Domain annotation for each model (and alignments):
>> Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   0.1   8.2e-40   2.5e-36       1     115 [.       1     119 [.       1     120 [. 0.93

  Alignments for each domain:
  == domain 1  score: 124.8 bits;  conditional E-value: 8.2e-40
                     X--HHHHHHHHHHHHHHHTT-EEEEEEE-SSHHHTS...THHHHHTT-.SEEEEEEEEETTEEEEEE..EEEEEEE-TTTEEESS........TT CS
  Fapy_DNA_glyco   1 MPElpEVetvrrglrrhllgkkiakvevlkdktlrg...spaafakalkgrkiasvgrrGKyllleldggevlvvhlgmtGrllikeaeeeppkh 92 
                     MPElpEVetvr+gl++ ++g++i++vev++++++r+    pa+fa+ l gr++ +v+rrGKyl+l ld+g+++v hlgm+G+ll++ a+++ + h
      KIR65518.1   1 MPELPEVETVRQGLAQWVTGRRIVGVEVRHPRAVRRhlaGPAHFADVLAGRTVLDVRRRGKYLWLPLDSGDAIVGHLGMSGQLLLQPATAADELH 95 
                     **************************************99*********************************************4444444469 PP

                     EEEEEEEG.GGEEEEEEETT---E CS
  Fapy_DNA_glyco  93 tkvrleld.dgtelaFvDpRrfGr 115
                      +vr++++ dg el+FvD+R+fG 
      KIR65518.1  96 LRVRFRFAdDGPELRFVDQRTFGG 119
                     9999999879************96 PP

>> H2TH  Formamidopyrimidine-DNA glycosylase H2TH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.0     3e-29   8.9e-26       1      88 [.     136     223 ..     136     226 .. 0.96

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 3e-29
                 ---BTTSTTS-HHHHHHHHHT--SBHHHHHHCTTTSCS--HHHHHHHHHHTT--TTSBGGGS-HHHHHHHHHHHHHHHHHHHHTTTTG CS
        H2TH   1 LgpeplseaftvdalaerlkkkkrkiktlLLDqklvaGlGNiyadEvLfrakihPerlakslskeelellhqeikevlkeaielgksg 88 
                 ++++p++ +f+ +a++++l+++++++k++LLDq+lv+G+GNiyadE+L+rak+h++r+  +l+   +++l+ ++++vl eai+ g+++
  KIR65518.1 136 IARDPMDPEFSDSAFVAALRRRRTEVKRALLDQTLVSGVGNIYADEALWRAKLHGARPTDQLTAPVAQRLLGHVRDVLGEAIKEGGTS 223
                 689*******************************************************************************976665 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   5.3   5.1e-14   1.5e-10       1      30 []     249     278 ..     249     278 .. 0.98

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 5.1e-14
                   TSB-TTT--BBEEEECTTEEEEE-TTTT.. CS
  zf-FPG_IleRS   1 GepCpRCwryiervgqagrstyfCprCqkv 30 
                   GepC+RC+ +++r+ +++rs+y CprCq++
    KIR65518.1 249 GEPCRRCGAPLRREAFMNRSSYSCPRCQPR 278
                   9***************************96 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.8e-07   0.00084     167     243 ..     138     217 ..     128     250 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.8e-07
                 BXTT..SXXH.HHHHHHHHHS.XXXHHHHHHH..BTTXXHHHHHHHHTTXSSSH...............HHHHHHHHTXXX CS
        FbpA 167 lnPl..eaeeleefkellskkekdlvkaLvka..fqGlspllaeelleragldketsakelseedlerlyealqelleele 243
                  +P+  e+++ ++f ++l++  +++++aL+++  ++G+++ +a e+l+ra+l  + ++++l++  ++rl  +++++l e  
  KIR65518.1 138 RDPMdpEFSD-SAFVAALRRRRTEVKRALLDQtlVSGVGNIYADEALWRAKLHGARPTDQLTAPVAQRLLGHVRDVLGEAI 217
                 4666656666.6888999998899*****854338***************************************9986544 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.4   5.6e-05      0.17      15      40 .]     249     276 ..     249     276 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.6e-05
  Auto_anti-p27  15 aetCpvCgvPLmrdr..kggkvyCvaCd 40 
                    +e C +Cg+PL r+   ++  + C++C+
     KIR65518.1 249 GEPCRRCGAPLRREAfmNRSSYSCPRCQ 276
                    689**********99*989999*****6 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.2     9e-05      0.27      15      35 ..     252     276 ..     246     282 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9e-05
         DZR  15 CseCgtklkavaa....edrCpsCg 35 
                 C +Cg++l+++a     ++ Cp+C+
  KIR65518.1 252 CRRCGAPLRREAFmnrsSYSCPRCQ 276
                 ********965559999*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2248.32
//
Query:       KIR65519.1  [L=292]
Description: hypothetical protein TK50_08995 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-47  162.0   0.0    1.6e-47  161.7   0.0    1.1  1  Glyco_hydro_114  Glycoside-hydrolase family GH114


Domain annotation for each model (and alignments):
>> Glyco_hydro_114  Glycoside-hydrolase family GH114
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   0.0   9.2e-52   1.6e-47       1     232 []      55     273 ..      55     273 .. 0.94

  Alignments for each domain:
  == domain 1  score: 161.7 bits;  conditional E-value: 9.2e-52
  Glyco_hydro_114   1 twqyqlqgpletspdavdvydiDlfdtsaatiaalkakgkkviCYfsaGevedwrpdaddfnpasvlgkkldgWpgerwldirtaakrsskvr. 93 
                      +wq+ql+gpl+t ++ +dv+ +D+  t+ ++ +al+ + ++++C + +G++ + +pdad++ p + +g++    pg rw+d+r     + +v+ 
       KIR65519.1  55 RWQWQLTGPLDTMVE-ADVFLLDPVRTTSTETTALRGRDRRLVCQVGVGAYARTDPDADRY-PPE-VGGAAGRSPGTRWVDVR-----RWDVLe 140
                      5***********999.************999******************************.874.555667889********.....345665 PP

  Glyco_hydro_114  94 simkaridlaaakGfdgvepDnvDsyesndtgflltaadqlayvkflaaeaharglaiglknageliselvdafdfavnEecaeyseCdtyepf 187
                      +i+++r++l++ kGf +v +   D+y ++ tgf+l+ +dql++++  aa+a++ +l+ gl  ++ ++++l+++fdfavnEec++ ++C+++ pf
       KIR65519.1 141 PILADRLRLCRGKGFGAVALADADGY-AHPTGFDLDFDDQLRFNRRAAALARSLELSPGLLGDVPQVTALAPDFDFAVNEECVRLRQCAKLLPF 233
                      **************************.788**************************************************************** PP

  Glyco_hydro_114 188 iaagkpVfhiEYpvsaaedaaacaaasraagfstvvkdldLddkw 232
                       +agkpVfh+EY   + + +++c  +    gf ++ k+++L d+w
       KIR65519.1 234 ADAGKPVFHVEY---TGDPDEFCV-TTLGYGFASIQKRREL-DAW 273
                      ************...8999*****.88888***********.566 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2280.07
//
Query:       KIR65520.1  [L=440]
Description: Allergen V5/Tpx-1 family protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-21   75.2   1.3    8.2e-21   75.2   1.3    2.1  2  CAP             Cysteine-rich secretory protein family
  ------ inclusion threshold ------
        6.5    5.9   8.8         12    5.1   8.8    1.3  1  ORC6            Origin recognition complex subunit 6 (ORC6)


Domain annotation for each model (and alignments):
>> CAP  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.4      0.21   1.9e+03      58      77 ..     120     144 ..      79     157 .. 0.67
   2 !   75.2   1.3   9.1e-25   8.2e-21       2     126 .]     323     436 ..     322     436 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.21
                 T.....EEEEEES--CCCHHHHHHT CS
         CAP  58 k.....eniaaaseaaedavdsWys 77 
                       e+  +  +a+e+a d+Wy 
  KIR65520.1 120 GqwqspEPPGDRWHAPERASDQWYP 144
                 1233355777888999999999985 PP

  == domain 2  score: 75.2 bits;  conditional E-value: 9.1e-25
                 HHHHHHHHHTT----EE-HHHHHHHHHHHHHHHHH.T---S-GGG--HHHHHHTT-T......EEEEEES--CCCHHHHHHTSHH.............H CS
         CAP   2 eahNeyRaaaglppLkwdatLekaAqdhardcaashsdsssspeggdllkyaenagk......eniaaaseaaedavdsWysepgtynkgketegsigh 94 
                 +++N+ Ra+ag  +Lk+d++L +aAq+h++d a+++  +++ ++g+d+ ++  +ag+      en+a +++++ +++d+W+++pg             h
  KIR65520.1 323 DLVNAERAKAGCGALKIDDKLMAAAQAHSQDQADHRKMTHDGSDGSDVGERLDRAGYawraygENVAWNQQTPAAVMDAWMNSPG-------------H 408
                 79******************************9999************************9988*********************.............* PP

                 HHHHT-SS--EEEEEEEEBTTS-E..EEEEEE CS
         CAP  95 ftnllwpkstkvGcavatcgngsftfivvcny 126
                 ++n+l+ ++t++G+++a++  g +   +++++
  KIR65520.1 409 RANILNCSFTEIGVGIANSN-GPY---WTQDF 436
                 *****************996.556...99987 PP

>> ORC6  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   8.8    0.0013        12      90     171 ..     255     356 ..     246     377 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0013
        ORC6  90 satstPskspsspst....dpkslrkqlfsTPtKsktlktalsasksssplkrrrklaneedgeeeeed.apswvstsir..................d 165
                 sa ++Ps sps+++t    +p + r+ ++ TP  s+t + + s ++ss+p ++r ++a++ + + +e   + + + +  +                   
  KIR65520.1 255 SAGPSPSPSPSASPTsaspSPSPSRT-AKPTPKPSRTTAASRSNQRSSAPATPRVAAAPGVSAQAQEVVdLVNAERA--KagcgalkiddklmaaaqaH 350
                 56677777777777776534433333.347788888777777779999**********9999998865533333333..34466666655555555544 PP

        ORC6 166 srpeis 171
                 s+++++
  KIR65520.1 351 SQDQAD 356
                 444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 3163.46
//
Query:       KIR65521.1  [L=64]
Description: hypothetical protein TK50_09005 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0016   18.0   0.4     0.0016   18.0   0.4    2.3  2  PikAIV_N        Narbonolide/10-deoxymethynolide synthase PikA
     0.0037   17.1   0.1      0.005   16.7   0.1    1.2  1  Shugoshin_N     Shugoshin N-terminal coiled-coil region
  ------ inclusion threshold ------
       0.01   15.8   2.9      0.014   15.4   2.9    1.3  1  DUF1192         Protein of unknown function (DUF1192)
      0.011   15.8   2.4      0.014   15.5   2.4    1.1  1  Cep57_CLD_2     Centrosome localisation domain of PPC89
      0.015   14.9   0.1      0.017   14.7   0.1    1.0  1  Filament        Intermediate filament protein
      0.024   14.4   0.4      0.026   14.3   0.4    1.2  1  DivIC           Septum formation initiator
      0.025   15.0   0.4      0.039   14.4   0.4    1.4  1  ZapB            Cell division protein ZapB
       0.03   14.5   0.2      0.034   14.4   0.2    1.1  1  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
      0.035   12.7   2.0      0.035   12.6   2.0    1.0  1  FUSC            Fusaric acid resistance protein family
      0.035   14.4   0.2      0.041   14.2   0.2    1.1  1  TSC22           TSC-22/dip/bun family
      0.037   14.1   0.1      0.048   13.8   0.1    1.1  1  bZIP_1          bZIP transcription factor
      0.041   11.7   0.1      0.045   11.6   0.1    1.0  1  CCDC158         Coiled-coil domain-containing protein 158
      0.093   12.6   0.5        1.1    9.3   0.1    2.2  2  Pox_A_type_inc  Viral A-type inclusion protein repeat
       0.12   12.6   0.3       0.52   10.6   0.1    1.9  2  HALZ            Homeobox associated leucine zipper
       0.24   11.7   3.7       0.35   11.2   3.4    1.5  2  kleA_kleC       Uncharacterized KorC regulated protein A


Domain annotation for each model (and alignments):
>> PikAIV_N  Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   1.3      0.19   2.2e+02      14      27 ..      18      31 ..      15      32 .. 0.78
   2 !   18.0   0.4   1.4e-06    0.0016      16      30 .]      34      48 ..      33      48 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.19
    PikAIV_N 14 LkEnERLRqqNrrL 27
                L E  RLR + ++L
  KIR65521.1 18 LDEVTRLRSRVQAL 31
                56999***876655 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.4e-06
    PikAIV_N 16 EnERLRqqNrrLtAA 30
                E+ RLR +N+rL+AA
  KIR65521.1 34 EITRLRAENDRLAAA 48
                899***********9 PP

>> Shugoshin_N  Shugoshin N-terminal coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   4.2e-06     0.005      17      40 ..      22      45 ..      15      46 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.2e-06
  Shugoshin_N 17 salslkirelekevseLlsENlnL 40
                   l+ +++ le e+++L++EN+ L
   KIR65521.1 22 TRLRSRVQALEFEITRLRAENDRL 45
                 56899****************865 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   2.9   1.2e-05     0.014      23      55 ..      22      54 ..      17      57 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-05
     DUF1192 23 eELeerIalLeaEIaRleaaiakkkasraAAea 55
                + L+ r+++Le EI Rl+a+ ++  a  a A+ 
  KIR65521.1 22 TRLRSRVQALEFEITRLRAENDRLAAAAAEADD 54
                5699*****************999998887775 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   2.4   1.1e-05     0.014       8      43 ..      17      52 ..      14      57 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
  Cep57_CLD_2  8 LqnrLdsltrklqvheeelkrLnkERdsalrqLgvA 43
                 L ++ ++l++++q+ e e+ rL++E+d+ + +  +A
   KIR65521.1 17 LLDEVTRLRSRVQALEFEITRLRAENDRLAAAAAEA 52
                 667899**********************99988877 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   1.4e-05     0.017     216     253 ..      19      56 ..      12      62 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 216 eeitelrrqiqsleieleslkkqkasleaqlaeleerl 253
                  e+t lr ++q+le e+  l+++++ l a+ ae+++ l
  KIR65521.1  19 DEVTRLRSRVQALEFEITRLRAENDRLAAAAAEADDLL 56 
                 699******************************99865 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.4   2.2e-05     0.026      20      53 ..      22      54 ..      15      62 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.2e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXX CS
       DivIC 20 kqlkqeiaalqaelaklkaeneeLeaevkdLksd 53
                 +l++ ++al+ e+ +l+aen++L+a  ++  +d
  KIR65521.1 22 TRLRSRVQALEFEITRLRAENDRLAAAAAEA-DD 54
                578999999999999******9999988877.55 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.4   3.3e-05     0.039       6      37 ..      21      52 ..      15      62 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.3e-05
        ZapB  6 LeqLEskiqkaidtitlLqmeieeLkeeneel 37
                  +L s++q++  +it+L+ e+++L +  +e 
  KIR65521.1 21 VTRLRSRVQALEFEITRLRAENDRLAAAAAEA 52
                34455555555555555555555555554444 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   2.8e-05     0.034      14      46 ..      21      53 ..      12      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.8e-05
  TMF_TATA_bd 14 verlsseirrlEgElaslkeelerleaerdear 46
                 v+rl s+++ lE E++ l+ e+ rl+a   ea 
   KIR65521.1 21 VTRLRSRVQALEFEITRLRAENDRLAAAAAEAD 53
                 789999***************999999887775 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.0   2.9e-05     0.035     176     235 ..       4      59 ..       1      62 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.9e-05
        FUSC 176 alageegaeareaararlaadilalealrsqaayesprirararalrrllsrmlallall 235
                 al g+ ga+      +rl++++++l + ++++++e +r+ra++++l+++ ++  +ll+l+
  KIR65521.1   4 ALYGHVGAAP----DRRLLDEVTRLRSRVQALEFEITRLRAENDRLAAAAAEADDLLRLA 59 
                 5556666665....48*********************************99998888776 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   3.4e-05     0.041      14      45 ..      19      50 ..      17      60 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.4e-05
       TSC22 14 EeVevLkekIkeLeernseleeENslLkalas 45
                +eV  L+++++ Le ++++l+ EN  L a a+
  KIR65521.1 19 DEVTRLRSRVQALEFEITRLRAENDRLAAAAA 50
                79**********************99987654 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1     4e-05     0.048      23      54 ..      16      47 ..      15      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 23 RKqaeieeLerrvkaLekeNksLkseleelkk 54
                R   e+ +L +rv+aLe e + L+ e+++l+ 
  KIR65521.1 16 RLLDEVTRLRSRVQALEFEITRLRAENDRLAA 47
                5567999*********************9975 PP

>> CCDC158  Coiled-coil domain-containing protein 158
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   3.7e-05     0.045     518     553 ..      20      55 ..      15      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.7e-05
     CCDC158 518 eitklrsrvdlklqelqhlknegdhlrnvqteceal 553
                 e+t+lrsrv+    e+  l++e+d l  + +e + l
  KIR65521.1  20 EVTRLRSRVQALEFEITRLRAENDRLAAAAAEADDL 55 
                 9*********999*******************9876 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00089       1.1       2      14 ..      20      32 ..      19      32 .. 0.89
   2 ?    1.3   0.0      0.29   3.5e+02       2       7 ..      34      39 ..      33      41 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00089
  Pox_A_type_inc  2 EmsrlRsRIsDLE 14
                    E++rlRsR+  LE
      KIR65521.1 20 EVTRLRSRVQALE 32
                    9*******98777 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.29
  Pox_A_type_inc  2 EmsrlR 7 
                    E++rlR
      KIR65521.1 34 EITRLR 39
                    9****9 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.054        64      29      42 ..      15      28 ..      14      29 .. 0.85
   2 ?   10.6   0.1   0.00044      0.52      10      33 ..      24      47 ..      22      57 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.054
        HALZ 29 ekLkaelqeLkekl 42
                ++L+ e+ +L++++
  KIR65521.1 15 RRLLDEVTRLRSRV 28
                6899******9986 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00044
        HALZ 10 LKasYdaLksdydsLkkenekLka 33
                L+++  aL  +   L++en++L a
  KIR65521.1 24 LRSRVQALEFEITRLRAENDRLAA 47
                8999999999999********986 PP

>> kleA_kleC  Uncharacterized KorC regulated protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.9   3.4e+03      37      47 ..      18      28 ..      14      33 .. 0.66
   2 ?   11.2   3.4    0.0003      0.35      17      41 ..      36      60 ..      22      63 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.9
   kleA_kleC 37 vrqaeeLRakv 47
                  ++ +LR +v
  KIR65521.1 18 LDEVTRLRSRV 28
                45567777766 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.0003
   kleA_kleC 17 tdlvarRdkiAaklaeAeeLvrqae 41
                t l+a+ d++Aa  aeA++L r ae
  KIR65521.1 36 TRLRAENDRLAAAAAEADDLLRLAE 60
                889******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 502.52
//
Query:       KIR65522.1  [L=206]
Description: haloacid dehalogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-11   43.0   0.0    7.8e-11   42.4   0.0    1.3  1  HAD_2           Haloacid dehalogenase-like hydrolase
    2.7e-10   40.9   2.1    6.1e-10   39.7   2.1    1.6  1  Hydrolase       haloacid dehalogenase-like hydrolase
    0.00017   21.6   0.0    0.00054   20.0   0.0    1.8  1  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
      0.035   14.5   0.2       0.05   14.0   0.2    1.4  1  HAD             haloacid dehalogenase-like hydrolase
       0.12   12.5   0.0        2.3    8.3   0.0    2.2  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   2.2e-14   7.8e-11      77     175 ..      91     188 ..      55     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 2.2e-14
       HAD_2  77 evkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikv 175
                   ++ ++v  ++ e+++ag+++g+ T++++  ++ +l++lg+++ +dv+v s+ v+ +KP+ e +++a+  l++ +++v++v D+   i +a++ag+ +
  KIR65522.1  91 RGEVDPDVLAFVREVRAAGVRVGLGTNGTD-LLDTDLAALGLTDELDVVVNSSVVGVHKPAKEYFQAACAALDTPPARVLFVDDEDWAIRGARAAGLSA 188
                 5556789999*****************985.799**************************************************************875 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   2.1   1.7e-13   6.1e-10      56     210 .]      38     185 ..       6     185 .. 0.75

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1.7e-13
                 HHHHHHHETTTE....HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHH CS
                 xxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  56 altgfatfigrg....ayaigkpewltaldippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaer 150
                  lt++a   gr     + ++   +w+++       +a  +sa ++ r  a +  +  + +  +    v p++  +v++ +aag++v+l t++       
  KIR65522.1  38 VLTEIAMHWGRLqpvlTGQVSHADWVASV-----ADALADSAGGEQRARAAV--EQWQRYRGE----VDPDVLAFVREVRAAGVRVGLGTNGTDLLDTD 125
                 44444443333354445566666777777.....777777777777777777..666666655....99***********************9977776 PP

                 HHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 151 aanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 +a  lG  d +d+v++s++++v kp +e ++aa+  L  +p++v++V+D  + + +++aAg
  KIR65522.1 126 LAA-LGlTDELDVVVNSSVVGVHKPAKEYFQAACAALDTPPARVLFVDDEDWAIRGARAAG 185
                 665.5767999************************************************98 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.5e-07   0.00054       3      44 ..     147     187 ..     146     189 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.5e-07
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-E CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwk 44 
                      KP++e + +a ++l+ +p++vl++ D  +  i+gA++aG++
      KIR65522.1 147 HKPAKEYFQAACAALDTPPARVLFVDDE-DWAIRGARAAGLS 187
                     6***************************.***********97 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   1.4e-05      0.05      70     130 ..      77     141 ..       9     169 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.4e-05
         HAD  70 aaelerfvaevirpk.lldpgalellaahraaGdrvvvvSgglrplvepllaelg....adevlat 130
                 +++++++v++++r +   dp++l++++++raaG+rv + ++g + l   l+ +lg     d v+++
  KIR65522.1  77 EQRARAAVEQWQRYRgEVDPDVLAFVREVRAAGVRVGLGTNGTDLLDTDLA-ALGltdeLDVVVNS 141
                 3455555566666555488***********************999988888.78854555555555 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.064   2.3e+02       2      13 ..      10      21 ..       9      44 .. 0.81
   2 ?    8.3   0.0   0.00066       2.3      17      83 ..      96     158 ..      87     174 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.064
                 EEESTTTSEETT CS
  Hydrolase_6  2 lfDidGvLwrgd 13
                 l+D+dGvL r d
   KIR65522.1 10 LVDLDGVLRRWD 21
                 89******8654 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00066
                  TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHHHHTT----GGGEEEHHHHHHHHHHHHSXXXEE CS
  Hydrolase_6  17 pgaaealnalraagkpvvllTNnsskseeeyakkleklgvditeeqvvtsataaaeylkkrkadkkv 83 
                  p +  +++ +raag++v l TN++        ++l +lg+  + + vv s+++ ++  +k++++  +
   KIR65522.1  96 PDVLAFVREVRAAGVRVGLGTNGTDLL----DTDLAALGLTDELDVVVNSSVVGVHKPAKEYFQAAC 158
                  7788999***************99877....455666777766666666666665555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1553.71
//
Query:       KIR65523.1  [L=173]
Description: Mini-circle protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-44  149.9   0.6      8e-44  149.7   0.6    1.0  1  DUF664    Protein of unknown function (DUF664)
    2.7e-07   31.1   2.4    3.3e-07   30.9   2.4    1.1  1  DinB_2    DinB superfamily
     0.0016   18.4   0.0      0.002   18.1   0.0    1.1  1  DinB      DinB family


Domain annotation for each model (and alignments):
>> DUF664  Protein of unknown function (DUF664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   0.6   1.3e-47     8e-44       2     150 .]      23     169 ..      22     169 .. 0.94

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 1.3e-47
                 HHHHHHHHHHHHHHHHTT--GGGTT--BTTB-S.-HHHHHHHHHHHHHHHHHHHTT-S---TTTSHHTTTSSS---SS---HHHHHHHHHHHHHHHHHH CS
      DUF664   2 LeafLdrqretllakleGLsdeqarrravpsst.sllgLvkHvaevErgwfrrvlggeeevpldrsaadpdadfelaedetladllaeyrravaradav 99 
                 L ++Ld++r+tll k++GL+ eq+r+++v++s  sllgLv+H+aevE +wfr++++g++    + + ++pdad +++  ++ ad la y+r+v  a+a+
  KIR65523.1  23 LDGWLDYHRQTLLLKCAGLTAEQLRTPSVEPSGlSLLGLVRHLAEVEAWWFRECFAGQRVDYPYFTPENPDADHDVSTADAEAD-LAVYHREVGLARAA 120
                 889***************************9999***********************9887777777********998888777.6899*********9 PP

                 HTT--HHHHTSB-T-......SBHHHHHHHHHHHHHHHHHHHHHHHHHH-X CS
      DUF664 100 vaaeldldetvrvpkapwgeevslrwvlvhlieetarHaGhadilRelidG 150
                 +a + +ldet +  + p+++ +slrwv++h+iee+arH+Ghad++Re+idG
  KIR65523.1 121 AA-GRSLDETFTE-VGPKQRTFSLRWVYLHMIEEYARHNGHADLIRERIDG 169
                 99.********95.5899999*****************************9 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   2.4   5.4e-11   3.3e-07       2     127 ..      27     159 ..      26     160 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 5.4e-11
      DinB_2   2 lerararllalledlteeelnrqps.pgkwsiawllaHlgnveelll.erlrgeeaprpgldpltp.....psaaealaylaevrarllallealtdad 93 
                 l+ +r++ll   ++lt+e+l+ + + p + s+  l++Hl+ ve  ++ e + g++ + p ++p++p      s a+a a la  ++++    +a++   
  KIR65523.1  27 LDYHRQTLLLKCAGLTAEQLRTPSVePSGLSLLGLVRHLAEVEAWWFrECFAGQRVDYPYFTPENPdadhdVSTADAEADLAVYHREVGLARAAAAGRS 125
                 6778999999999**********984667***************8883556699999766666666666678999999999999999999999999999 PP

      DinB_2  94 ldrpltaphpglgkltlgdvllfvlqHeqhHleq 127
                 ld++ t   p+ ++++l++v+l+++++ ++H ++
  KIR65523.1 126 LDETFTEVGPKQRTFSLRWVYLHMIEEYARHNGH 159
                 ****999999*********************986 PP

>> DinB  DinB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.4e-07     0.002      13     140 ..      26     160 ..      17     165 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.4e-07
                 HHHHHHHHHHHHHCT--CCCTT--SST.TS--HHHHHHHHHHHHHHHHHH.HHH...........SSSGGGT---------HHHHHHHHHHHHHHHHCT CS
        DinB  13 ynqwardrtldaiaaLpdeelkaenge.gfqsvkqtlnHvldveelwlsr.leg.........eegapavddqterkeleeldalrealderliafldq 100
                 ++  +r+++l  +a L++e+l  +  e ++ s+ +++ H+++ve  w+++ ++g          e  +a +d + +++  +l+++++++  + +a + +
  KIR65523.1  26 WLDYHRQTLLLKCAGLTAEQLRTPSVEpSGLSLLGLVRHLAEVEAWWFREcFAGqrvdypyftPENPDADHDVSTADAEADLAVYHREVGLARAAAAGR 124
                 556689999999**********655551677****************9873666***999995555555555666677888999999998888877777 PP

                 --HHHHHSEE------SS-EEHHHHHHHHHHHHHHHHHHH CS
        DinB 101 ltdleretlldradagtvkmtlaelLaHvinHethHrGqi 140
                   d    +  +   +++++ +l+ +  H+i+   +H G +
  KIR65523.1 125 SLD----ETFTEVGPKQRTFSLRWVYLHMIEEYARHNGHA 160
                 777....455666889999999999999999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1239.87
//
Query:       KIR65524.1  [L=146]
Description: MarR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-15   54.3   0.6    2.1e-14   53.1   0.6    1.6  1  MarR_2          MarR family
    2.5e-13   49.7   0.1    4.1e-13   49.0   0.1    1.4  1  MarR            MarR family
    2.5e-10   40.7   0.1    4.1e-10   40.0   0.1    1.4  1  HTH_27          Winged helix DNA-binding domain
    2.3e-07   30.5   0.4    5.8e-07   29.2   0.4    1.8  1  HTH_IclR        IclR helix-turn-helix domain
    2.6e-06   27.4   0.4    2.6e-06   27.4   0.4    2.2  3  HTH_20          Helix-turn-helix domain
    6.9e-06   26.1   0.0      1e-05   25.6   0.0    1.2  1  HTH_34          Winged helix DNA-binding domain
    1.6e-05   24.7   0.0    2.4e-05   24.1   0.0    1.3  1  HTH_5           Bacterial regulatory protein, arsR family
     0.0001   21.8   0.1    0.00021   20.8   0.1    1.7  1  HTH_24          Winged helix-turn-helix DNA-binding
    0.00014   21.6   0.0    0.00023   20.9   0.0    1.4  1  HxlR            HxlR-like helix-turn-helix
    0.00027   20.6   0.1     0.0006   19.5   0.1    1.5  1  HTH_DeoR        DeoR-like helix-turn-helix domain
    0.00084   19.2   0.1     0.0013   18.6   0.1    1.3  1  HTH_36          Helix-turn-helix domain
      0.001   18.9   0.0     0.0023   17.8   0.0    1.6  2  TrmB            Sugar-specific transcriptional regulator TrmB
     0.0026   17.7   0.2     0.0058   16.6   0.2    1.6  1  HTH_Crp_2       Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
       0.01   15.8   1.2      0.094   12.7   0.8    2.7  1  HTH_1           Bacterial regulatory helix-turn-helix protein
      0.013   15.4   0.1      0.024   14.6   0.1    1.3  1  HTH_11          HTH domain
      0.029   14.5   0.2      0.049   13.8   0.2    1.4  1  DprA_WH         DprA winged helix domain
      0.038   14.2   0.0      0.062   13.5   0.0    1.3  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.042   14.0   0.0      0.073   13.2   0.0    1.4  1  Phage_CI_repr   Bacteriophage CI repressor helix-turn-helix d
      0.045   14.4   0.0      0.067   13.8   0.0    1.3  1  Mga             Mga helix-turn-helix domain
       0.05   13.3   0.2       0.17   11.5   0.1    1.9  2  GntR            Bacterial regulatory proteins, gntR family
      0.057   13.4   0.1      0.092   12.7   0.1    1.4  1  PadR            Transcriptional regulator PadR-like family
      0.072   13.2   0.0       0.18   11.9   0.0    1.7  1  HTH_3           Helix-turn-helix
      0.089   12.5   0.0       0.14   11.9   0.0    1.2  1  HrcA_DNA-bdg    Winged helix-turn-helix transcription repress
       0.14   12.0   0.0       0.29   11.0   0.0    1.5  1  HTH_10          HTH DNA binding domain


Domain annotation for each model (and alignments):
>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.6   2.8e-17   2.1e-14       4      62 .]      39      95 ..      36      95 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 2.8e-17
                -HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2  4 tpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                +   + +L++L+r++    + ++l +rlg+sk+++sr ++ L+a GLv+r+p peD+Ra
  KIR65524.1 39 DQNAYGLLLWLRRSDA--TRLTDLSARLGISKGTLSRQINGLEALGLVRREPEPEDRRA 95
                5667889********9..8***************************************7 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.1   5.5e-16   4.1e-13       3      58 ..      40      95 ..      38      96 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 5.5e-16
                HHHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR  3 ltqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRskspeDrRe 58
                ++ + +L +l+++++ ++++L  +lg+sk+t++r++  Le  Gl++R++ peDrR+
  KIR65524.1 40 QNAYGLLLWLRRSDATRLTDLSARLGISKGTLSRQINGLEALGLVRREPEPEDRRA 95
                677889*************************************************6 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   5.4e-13   4.1e-10       8      68 .]      45     104 ..      38     104 .. 0.92

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 5.4e-13
      HTH_27   8 vLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                 +L  +r r +  +l+dl+ rl +++ + s  ++ L++ GLv r++ ++drr+ r++lT++G
  KIR65524.1  45 LLLWLR-RSDATRLTDLSARLGISKGTLSRQINGLEALGLVRREPEPEDRRAWRLTLTEEG 104
                 455566.8999*************************************************9 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.4   7.7e-10   5.8e-07       7      52 .]      44      88 ..      40      88 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 7.7e-10
                HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE... CS
    HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqdg 52
                 +L  l++ +   +l++l++r+g++k t +R ++ L+ lG+v++++
  KIR65524.1 44 GLLLWLRRSDAT-RLTDLSARLGISKGTLSRQINGLEALGLVRREP 88
                578889999997.******************************986 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.9   2.9e+03      17      32 ..      18      32 ..      13      42 .. 0.48
   2 !   27.4   0.4   3.5e-09   2.6e-06      13      59 ..      43      89 ..      38      91 .. 0.93
   3 ?   -1.7   0.1       4.1   3.1e+03      11      20 ..     114     126 ..     110     133 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.9
                HHHSTCTTB-HHHHHH CS
      HTH_20 17 raLaraegltaselae 32
                ++L+r++ l+++   +
  KIR65524.1 18 ALLRRGRSLSFEVA-R 32
                34444444444443.3 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 3.5e-09
                HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECT CS
      HTH_20 13 rrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvre 59
                +++l +L+r ++  +++l +rl++sk tls++++ Le  gLv+++ e
  KIR65524.1 43 YGLLLWLRRSDATRLTDLSARLGISKGTLSRQINGLEALGLVRREPE 89
                68999***************************************988 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 4.1
                 HHHHHHHHH...S CS
      HTH_20  11 vRrrilraL...a 20 
                 +R++++r +   +
  KIR65524.1 114 TRLAMFRRIvesW 126
                 7888888875553 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.4e-08     1e-05       6      71 ..      46     110 ..      43     117 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.4e-08
      HTH_34   6 lsyLasvdeadfvelkealeatdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGreafkk 71 
                 l  L   d    ++l++ l++++g Ls +++ Le+ g + ++ e +++ +   l++T+eG+ +f++
  KIR65524.1  46 LLWLRRSDATRLTDLSARLGISKGTLSRQINGLEALGLVRREPEPEDR-RAWRLTLTEEGQRRFDA 110
                 5667778889999********************************999.89999**********86 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   3.2e-08   2.4e-05       8      46 ..      46      85 ..      39      86 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 3.2e-08
                HHHHTTSS.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  8 LklLaege.lcvcelaeelglsqstvShHLkkLreaGLVe 46
                L  L+++  +  ++l++ lg+s++t+S++ + L+ +GLV+
  KIR65524.1 46 LLWLRRSDaTRLTDLSARLGISKGTLSRQINGLEALGLVR 85
                5667774447899**************************6 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   2.8e-07   0.00021      21      48 .]      58      85 ..      38      85 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.8e-07
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGlIk 48
                ++L+ rlg+S++t++r+++ Le  Gl++
  KIR65524.1 58 TDLSARLGISKGTLSRQINGLEALGLVR 85
                79************************96 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.1e-07   0.00023       9      71 ..      45     106 ..      38     120 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.1e-07
                 HHHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGG CS
        HxlR   9 lilvellkgkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrs 71 
                 l+l+   +   R ++l+++l +is+ +L++++  Le+ gl+ re+ pe       +lte+G+ 
  KIR65524.1  45 LLLWLRRSDATRLTDLSARL-GISKGTLSRQINGLEALGLVRREPEPEDRRAWRLTLTEEGQR 106
                 66666677899*********.9**************************************975 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1     8e-07    0.0006       5      46 ..      45      86 ..      43      87 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 8e-07
    HTH_DeoR  5 ilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltR 46
                +l +l++++  ++++l+++lg+S+ T  R +n Le+ gl++R
  KIR65524.1 45 LLLWLRRSDATRLTDLSARLGISKGTLSRQINGLEALGLVRR 86
                6779***********************************998 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.7e-06    0.0013      28      55 .]      57      84 ..      38      84 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.7e-06
      HTH_36 28 qetlakrlglsknTvsraikeLeqlGyi 55
                  +l++rlg+sk T sr i+ Le lG++
  KIR65524.1 57 LTDLSARLGISKGTLSRQINGLEALGLV 84
                679***********************85 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.5   4.1e+03      15      31 ..      17      33 ..      16      35 .. 0.77
   2 !   17.8   0.0   3.1e-06    0.0023      11      58 ..      40      90 ..      36     110 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.5
                HHHHHHCCCHHCHHCCC CS
        TrmB 15 laLlklgpatadeiaee 31
                +aLl++g++   e+a+e
  KIR65524.1 17 TALLRRGRSLSFEVARE 33
                68999998888888876 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 3.1e-06
                CCHCHHHH...HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 11 akvYlaLl...klgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                  +Y  Ll   +++  + ++++ +lg+++ +  + ++ Le  GlV+re++ 
  KIR65524.1 40 QNAYGLLLwlrRSDATRLTDLSARLGISKGTLSRQINGLEALGLVRREPEP 90
                56777777665667777899****************************986 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   7.8e-06    0.0058      25      54 ..      58      87 ..      43     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.8e-06
                HHHHHHTTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 25 eelAsmlGltretvsrilseLkreglisrg 54
                ++l+++lG++  t+sr ++ L+  gl++r+
  KIR65524.1 58 TDLSARLGISKGTLSRQINGLEALGLVRRE 87
                79*************************964 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.8   0.00013     0.094      21      60 .]      62     105 ..      57     105 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
                 HHHTS-HHHHHHHHHHHHHHHTS-SEEE.....SSSE...EEE-HHHH CS
       HTH_1  21 eeLglsqpavsrqikrLEeelgvpLfeR.....tgrg...lrLTeaGe 60 
                  +Lg+s  ++srqi+ LE++    L+ R     + r+   l+LTe+G+
  KIR65524.1  62 ARLGISKGTLSRQINGLEAL---GLVRRepepeD-RRawrLTLTEEGQ 105
                 69****************86...36665333322.2234477777776 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   3.2e-05     0.024       7      43 ..      47      82 ..      44      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.2e-05
      HTH_11  7 elLleargpisgeeLAeeLnvSrrtvrrdIkaLeelg 43
                 +L++++      +L+ +L++S+ t  r I  Le+lg
  KIR65524.1 47 LWLRRSDA-TRLTDLSARLGISKGTLSRQINGLEALG 82
                55644443.67889**********************9 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   6.5e-05     0.049      23      59 ..      52      88 ..      32      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.5e-05
     DprA_WH 23 pePvhvDqLvrrtglpaaevsaaLleLELaGlverlp 59
                ++++ + +L++r+g++ +++s++   LE  Glv+r p
  KIR65524.1 52 SDATRLTDLSARLGISKGTLSRQINGLEALGLVRREP 88
                57888889***************************98 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.2e-05     0.062      24      56 ..      56      88 ..      50      90 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.2e-05
                    -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
  Fe_dep_repress 24 ktkdlaerLnvspssVsemlkkLekdGyveyek 56
                    + +dl+ rL++s+ + s  ++ Le  G+v  e+
      KIR65524.1 56 RLTDLSARLGISKGTLSRQINGLEALGLVRREP 88
                    669**************************9887 PP

>> Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.7e-05     0.073      16      36 ..      58     130 ..      50     134 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.7e-05
                    HHHHCCTT--HHHHH....................................................HHHHSS CS
  Phage_CI_repr  16 keLAdlLgiakssvs....................................................twvrRd 36 
                     +L+++Lgi+k ++s                                                     w+rRd
     KIR65524.1  58 TDLSARLGISKGTLSrqinglealglvrrepepedrrawrltlteegqrrfdaaratrlamfrriveSWSRRD 130
                    59**********************9999999999999999999999999999999999999999999999999 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     9e-05     0.067      17      55 ..      41      79 ..      11      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9e-05
                HHHHHHHHHHHHSEEEHHHHHHHCT--HHHHHHHHHHHH CS
         Mga 17 lkyqllkflfeeeevsieelaqelyiSestlkrkikeln 55
                + y ll  l  ++ + +++l+++l iS+ tl r+i++l+
  KIR65524.1 41 NAYGLLLWLRRSDATRLTDLSARLGISKGTLSRQINGLE 79
                67888888889999*********************9987 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.3   2.5e+03       5      17 ..      12      24 ..      10      26 .. 0.81
   2 ?   11.5   0.1   0.00023      0.17      28      58 ..      58      88 ..      54      90 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.3
                HHHHHHHHHHTTS CS
        GntR  5 vyerLredIlsge 17
                v+++L++++++g+
  KIR65524.1 12 VEHELTALLRRGR 24
                8899999999886 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00023
                HHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
        GntR 28 reLaaefgVsrttvReALrrLeaeglverrq 58
                 +L+a++g+s+ t+ + ++ Lea glv r++
  KIR65524.1 58 TDLSARLGISKGTLSRQINGLEALGLVRREP 88
                579*************************986 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00012     0.092      21      73 ..      59     108 ..      41     110 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00012
                 CCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHH CS
        PadR  21 elsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrel 73 
                 +ls   l +s+G+l ++ + Le+ glv +e e++  +++    +lT++G+r++
  KIR65524.1  59 DLSA-RLGISKGTLSRQINGLEALGLVRREPEPE--DRRAWRLTLTEEGQRRF 108
                 5543.36699********************9986..33333347889999987 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00024      0.18      12      32 ..      57      77 ..      48      92 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00024
                HHHHHHHHTSSHHHHHHHHTT CS
       HTH_3 12 qeeLAeklGvsrstisriEnG 32
                +++L+++lG+s+ t+sr +nG
  KIR65524.1 57 LTDLSARLGISKGTLSRQING 77
                479**************8888 PP

>> HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor, HrcA DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018      0.14      22      60 ..      53      91 ..      45      93 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
  HrcA_DNA-bdg 22 ravKgeeiAevlkrneGtvRNqlqsLkalgLvegvpGPk 60
                   a + +++ + l+  +Gt+  q++ L algLv   p P+
    KIR65524.1 53 DATRLTDLSARLGISKGTLSRQINGLEALGLVRREPEPE 91
                  56667889999**********************999885 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00039      0.29      24      44 ..      55      75 ..      51      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00039
      HTH_10 24 vtlkeLAkelGIskstlsehL 44
                ++l +L+ +lGIsk tls  +
  KIR65524.1 55 TRLTDLSARLGISKGTLSRQI 75
                5799************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1138.71
//
Query:       KIR65525.1  [L=572]
Description: hypothetical protein TK50_09030 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-17   61.3   0.8    2.6e-14   53.0   1.4    2.2  2  PhoD      PhoD-like phosphatase


Domain annotation for each model (and alignments):
>> PhoD  PhoD-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   1.4   1.4e-18   2.6e-14      23     151 ..     138     276 ..     107     335 .. 0.79
   2 !    5.6   0.0   0.00038       6.9     266     303 ..     452     489 ..     446     528 .. 0.89

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 1.4e-18
        PhoD  23 e.....edlDlvlhlGDyiYeyg.pgeyaseaaelgrevepp..keivtladYReryaqyktdadlqaahaaapfivvwDDHEvaNnswsggaenhq.e 112
                 +     +++Dl++ lGD +Y+++  +++++  ++  r+ e +  +++v+ ++Y + y +  +d++++ + +++p ++++DDHEv ++ w+++a+  +  
  KIR65525.1 138 DpgradAQPDLLVLLGDQVYADEtSPTVRRLLKRRRRRPEGApaTQVVSFDEYTKLYLESWRDPEIRWLFSTVPSVMIFDDHEVIDD-WNTSASWRDdM 235
                 33444359**************8555555553333333333346*******************************************.***99998845 PP

        PhoD 113 etegdfekrkaaAlqAyfEwmPireakp..geeeriyrsfe 151
                 + +  +++r  ++l  y  ++ + + +p   +++ +yr+++
  KIR65525.1 236 RAQPWWAERIGSGLASYWVYQHLGNLDPdeIAADPVYRKVT 276
                 56666699999999999988777666441133466666655 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.00038
        PhoD 266 VvLtGDvHaawandldykdpdgeavgvEfvtgsvssgg 303
                  vL+GDvH++++ + ++ dp+ ++ ++ + +++++ + 
  KIR65525.1 452 SVLSGDVHHSYVARARFPDPAVHTPVHQLTCSPIHNQV 489
                 58*************9999999999*******999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4450.38
//
Query:       KIR65526.1  [L=395]
Description: cell division protein FtsY [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-71  240.4   0.8    1.5e-71  240.1   0.8    1.1  1  SRP54            SRP54-type protein, GTPase domain
    2.8e-11   43.5   0.3    6.7e-11   42.3   0.3    1.6  1  SRP54_N          SRP54-type protein, helical bundle domain
    1.1e-05   25.3   1.3      2e-05   24.4   1.3    1.4  1  AAA_30           AAA domain
    8.8e-05   22.6   0.0    0.00025   21.1   0.0    1.8  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
    0.00017   22.0   0.8    0.00036   21.0   0.2    1.8  2  AAA_16           AAA ATPase domain
    0.00019   20.8   0.0    0.00035   19.9   0.0    1.3  1  Zeta_toxin       Zeta toxin
  ------ inclusion threshold ------
      0.011   15.5   0.0       0.02   14.6   0.0    1.4  1  AAA_24           AAA domain
      0.017   14.8   0.2      0.067   12.9   0.1    1.9  2  Thymidylate_kin  Thymidylate kinase
      0.037   14.4   0.8      0.065   13.6   0.2    1.7  2  AAA_19           AAA domain
      0.039   14.4   0.1      0.039   14.4   0.1    1.8  2  AAA_17           AAA domain
      0.044   13.7   0.9      0.063   13.2   0.1    1.6  2  APS_kinase       Adenylylsulphate kinase
       0.05   13.4   0.2      0.095   12.5   0.2    1.4  1  ATP_bind_1       Conserved hypothetical ATP binding protein
       0.13   12.5   0.7       0.18   12.0   0.0    1.7  1  AAA_33           AAA domain
       0.13   11.8   0.0        2.5    7.7   0.0    2.1  2  AAA_27           AAA domain
       0.13   12.7   0.0       0.25   11.8   0.0    1.4  1  ABC_tran         ABC transporter
       0.15   12.0   1.3       0.39   10.6   0.5    2.0  2  NTPase_1         NTPase
       0.29   11.5   1.4       0.71   10.3   0.2    2.1  2  AAA              ATPase family associated with various cellul
       0.37   10.4   2.0         12    5.5   0.1    2.2  2  cobW             CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.1   0.8   1.5e-74   1.5e-71       1     196 []     188     387 ..     188     387 .. 0.98

  Alignments for each domain:
  == domain 1  score: 240.1 bits;  conditional E-value: 1.5e-74
                 SEEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE--SSTTHH CS
       SRP54   1 pnvillvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeeadpaavakeavekakeekidvvlvDTaGrlqndk 99 
                 p v+l+vG++GaGKTtt++K+a++l ++g++vll aaDtfRaaA++QL+t++ ++g++ ++  e+adpa+va++av++  + ++d+vl+DTaGrlqn+ 
  KIR65526.1 188 PAVVLVVGVNGAGKTTTCGKIARVLVADGRSVLLGAADTFRAAAADQLETWGGRVGAETVRGPEAADPASVAFDAVKRGIDTGVDTVLIDTAGRLQNKV 286
                 579************************************************************************************************ PP

                 HHHHHHHHHHHHH....SSSEEEEEEETTBHTHHHHHHHHHHHHSSCSEEEEESTTSSSSTTHHHHHHHHHTS-EEEEE-SSSTTGEEE--HHHHHHHH CS
       SRP54 100 elmeelkkikkvv....kpdevllvldattgqeavkqakaFkeavgitgviltklDgdakgGaalsiaaelklPikfigvGekiedleefdperlvsrl 194
                  lm+el k+k+vv      de+llvldattgq+ ++qa+ F e+v++tgv+ltklDg+akgG++++++++l++P+k++g+Ge  +dl++fdp ++v++l
  KIR65526.1 287 GLMDELGKVKRVVekhgPIDETLLVLDATTGQNGLEQARVFTEVVNVTGVVLTKLDGTAKGGIVIAVQRKLGIPVKLVGLGEGKDDLAPFDPAQFVDAL 385
                 *************77766689*****************************************************************************9 PP

                 HT CS
       SRP54 195 lg 196
                 lg
  KIR65526.1 386 LG 387
                 85 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.3   6.7e-14   6.7e-11       1      75 []     102     167 ..     102     167 .. 0.85

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 6.7e-14
                 HHHHHHHHHHHHCCSSCGHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHCTTSS-HHHHHHHHHHHHH CS
     SRP54_N   1 LgkklnsalkklsgkskideedleealkeleeaLleaDVgvkvvkklienvkkkavgekklkpkqqvkkivkdeL 75 
                 +gk+l ++l+    ++++de+++ee    +e++L++aDVg++ ++++++++++ + +   +++ ++++ ++  eL
  KIR65526.1 102 FGKGLLGLLS----RDRLDEDTWEE----IEDSLITADVGIDSTREIVDRLRE-RTRVLGTRTVDELRALLAAEL 167
                 5788888886....699********....************************.555466778888888877776 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   1.3     2e-08     2e-05      20     102 ..     190     284 ..     182     304 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2e-08
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrvi.glApt..gkaAkvLaeelg.ieastiakllkrlk.......grarlepg.tllivDEagmvdt 102
                 v++++G+ G+GKtt+ +++++++ a+g++v+ g+A t  ++aA++L++  g + a+t+     +          +  +++g + +++D ag + +
  KIR65526.1 190 VVLVVGVNGAGKTTTCGKIARVLVADGRSVLlGAADTfrAAAADQLETWGGrVGAETVRGPEAADPasvafdaVKRGIDTGvDTVLIDTAGRLQN 284
                 899************************99985777772244556688543345677777666444466777774467788888888888887654 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.5e-07   0.00025       9      89 ..     198     346 ..     190     365 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.5e-07
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep..................................................... 54 
                 G+GKTt++ ++ar l  +g+ Vll  aD+ + ++a       ++e+                                                     
  KIR65526.1 198 GAGKTTTCGKIARVLVADGRSVLLGAADTFRAAAAD------QLETwggrvgaetvrgpeaadpasvafdavkrgidtgvdtvlidtagrlqnkvglmd 290
                 9****************************9998883......22225555666788999999************************************* PP

                 .........................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS... CS
                 .........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 .........................dlkrllellealgkkkalllkiagvvlnrvdgene 89 
                                          + + +le ++++ ++    +++ gvvl++ dg + 
  KIR65526.1 291 elgkvkrvvekhgpidetllvldatTGQNGLEQARVFTEV----VNVTGVVLTKLDGTAK 346
                 *************999999999888555666666666666....788********99854 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       1.2   1.2e+03      80     127 ..     105     163 ..      84     183 .. 0.48
   2 !   21.0   0.2   3.6e-07   0.00036      15      72 ..     174     231 ..     165     314 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.2
      AAA_16  80 ellrqlldeaesaeleawrekleeala.........................avpelagaeasrllellkrll 127
                 +ll  l ++    + + w e  ++ ++                                       ++l++ll
  KIR65526.1 105 GLLGLLSRD--RLDEDTWEEIEDSLITadvgidstreivdrlrertrvlgtrT------------VDELRALL 163
                 555555555..223444444333333355555555553332222222333333............44444433 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 3.6e-07
      AAA_16  15 alervrsgrp.....elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysal 72 
                 al+r  +  p      +vl++G  G GK++   +++r l +dg  +l g +d +++a      
  KIR65526.1 174 ALDRSLRTAPsdgvpAVVLVVGVNGAGKTTTCGKIARVLVADGRSVLLGAADTFRAA-----A 231
                 4443333333333459**************************999999999999222.....2 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.5e-07   0.00035       9      56 ..     180     229 ..     173     237 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.5e-07
  Zeta_toxin   9 k.ypsqerPklillgGqpGAGKselaellkdelerqgnvvrld.pDdlRe 56 
                 +  ps+  P+++l++G  GAGK+++  ++++ l ++g+ v l  +D++R+
  KIR65526.1 180 RtAPSDGVPAVVLVVGVNGAGKTTTCGKIARVLVADGRSVLLGaADTFRA 229
                 33578899*************************98888888852688886 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0     2e-05      0.02       3      80 ..     189     285 ..     187     302 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2e-05
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfidtek....Glksldadkfpdieswedfldevvel...................aaeladyktlviDtidele 78 
                 + +l++G +g+GKTt++ ++  ++l+ d        ++   a+  +++e+w   + +                       +  + + +t+ iDt++ l 
  KIR65526.1 189 AVVLVVGVNGAGKTTTCGKI-ARVLVADGRSvllgAADTFRAAAADQLETWGGRVGA---EtvrgpeaadpasvafdavkRGIDTGVDTVLIDTAGRLQ 283
                 6799****************.999998654411101111222222233333333333...144477888888888888888899999999999999887 PP

      AAA_24  79 el 80 
                 + 
  KIR65526.1 284 NK 285
                 65 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.4   1.4e+03      38      89 ..     102     156 ..      97     172 .. 0.74
   2 ?   12.9   0.1   6.7e-05     0.067       3      29 ..     195     221 ..     193     227 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.4
                      HHHHHHHHHHTCS---HHH....HHHHHHHHHHHTTHHHHHHHHHTT-EEEEES-H CS
  Thymidylate_kin  38 iGekirelllkeeeleeqt....eallfaadriehleekikpalkqgktvivdRyl 89 
                      +G+ + +ll+ + +l+e t    e  l++ad+    +++i   l + + v  +R +
       KIR65526.1 102 FGKGLLGLLS-RDRLDEDTweeiEDSLITADVGIDSTREIVDRLRERTRVLGTRTV 156
                      5666666666.333333333455888999999999999999999999999888876 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.7e-05
                      ESTTSSHHHHHHHHHHHHHHTTE.EEE CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeegikvvl 29 
                      G++GaGKtt + ++++ l + g++v+l
       KIR65526.1 195 GVNGAGKTTTCGKIARVLVADGRSVLL 221
                      9*******************9998765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.1   5.1e+03      51      68 ..     137     154 ..     130     172 .. 0.74
   2 ?   13.6   0.2   6.5e-05     0.065      11     109 ..     189     313 ..     180     338 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.1
      AAA_19  51 tgrAakelrerlaalgae 68 
                 t+  +++lrer+++lg +
  KIR65526.1 137 TREIVDRLRERTRVLGTR 154
                 666778899999776654 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 6.5e-05
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.....................atTiHrlal.......ldfd 81 
                  v+lv++  G GKT++  +i ++lv+ g+  +   ++ +f   Aa++l++    +gae                     +               +d+ 
  KIR65526.1 189 AVVLVVGVNGAGKTTTCGKIARVLVADGRS-VLLGAADTFRAAAADQLETWGGRVGAEtvrgpeaadpasvafdavkrgI-------DtgvdtvlIDTA 279
                 6899*********************99943.3333444555555566665443333334444444444444444444442.......033333334444 PP

      AAA_19  82 dlltealelle.......eaeeekklqeeellivD 109
                 ++l+++++l++         e++ ++ +e+ll+ D
  KIR65526.1 280 GRLQNKVGLMDelgkvkrVVEKHGPI-DETLLVLD 313
                 44444444444333333333344455.55555555 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       5.7   5.7e+03      92     125 ..     115     149 ..     110     160 .. 0.52
   2 ?   14.4   0.1   3.9e-05     0.039       1      92 [.     194     292 ..     194     316 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.7
                 SHHHHHHHH..SEEEE.EE--HH.HHHHHHHHHTTS CS
      AAA_17  92 lpkevleelkpdaiil.leadpe.eilerrlkdrtr 125
                 l++++ ee++ ++i+  + +d   ei++r+ + rtr
  KIR65526.1 115 LDEDTWEEIEDSLITAdVGIDSTrEIVDRLRE-RTR 149
                 55555566655555544333332156655544.444 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 3.9e-05
                 EE-TTSSHHHHHHHHHHHH....TEEEEEHHHHHHHHHHTT....TSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEES CS
      AAA_17   1 lGgPGsGKgtqceklveky....gfthlsaGdllreeakrg....glakardemrklpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldg 91 
                 +G+ G+GK+t c k+++ +        l a d +r+ a+++    g     + +r  +  +   +   a ++  ++ + ++vl+d+  r++++ g++d+
  KIR65526.1 194 VGVNGAGKTTTCGKIARVLvadgRSVLLGAADTFRAAAADQletwGGRVGAETVRGPEAADPASVAFDAVKRGIDT-GVDTVLIDTAGRLQNKVGLMDE 291
                 79*************9988777577788999999998876643222211222222222222333333333333332.4566777777777777666665 PP

                 S CS
      AAA_17  92 l 92 
                 l
  KIR65526.1 292 L 292
                 5 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   6.3e-05     0.063       2      45 ..     188     231 ..     187     238 .. 0.89
   2 ?   -2.9   0.1       5.6   5.5e+03       5      26 ..     336     357 ..     333     359 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.3e-05
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTT CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgL 45 
                 ++vv++ G+ g+GK+t   ++++ Lv++g+sv l   d+ R   
  KIR65526.1 188 PAVVLVVGVNGAGKTTTCGKIARVLVADGRSVLLGAADTFRAAA 231
                 6799****************************999999988765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.6
                 EEEESSTTSSHHHHHHHHHHHH CS
  APS_kinase   5 vwltGlsgsGKstianalekkL 26 
                 v lt l g+ K  i  a+++kL
  KIR65526.1 336 VVLTKLDGTAKGGIVIAVQRKL 357
                 6799999999999999999998 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   9.5e-05     0.095       1      27 [.     193     219 ..     193     227 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.5e-05
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsv 27 
                 vvG+ G+GKtt +g+++ +l + grsv
  KIR65526.1 193 VVGVNGAGKTTTCGKIARVLVADGRSV 219
                 89******************9999987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00018      0.18       1      24 [.     190     213 ..     190     286 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00018
      AAA_33   1 lvllvGlpGsGKstlaerllkklg 24 
                 +vl+vG++G+GK+t   ++++ l 
  KIR65526.1 190 VVLVVGVNGAGKTTTCGKIARVLV 213
                 89************9887776554 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.13   1.3e+02     143     180 ..     122     159 ..     117     184 .. 0.82
   2 ?    7.7   0.0    0.0025       2.5      25      47 ..     187     209 ..     173     214 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.13
      AAA_27 143 elgqlLfeasaGlaslrevleaLeaeadelfkprkskk 180
                 e+  +L++a  G+ s re++++L+++ + l +++  + 
  KIR65526.1 122 EIEDSLITADVGIDSTREIVDRLRERTRVLGTRTVDEL 159
                 77789********************9998877766555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0025
      AAA_27  25 eadlhliyGpNEAGKstalrAis 47 
                  + + l++G N AGK+t+   i 
  KIR65526.1 187 VPAVVLVVGVNGAGKTTTCGKIA 209
                 57789************987665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00025      0.25      13      45 ..     190     222 ..     188     249 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00025
                 EEEEEESTTSSHHHHHHHHTTSS--SEEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpteGeilld 45 
                 +v +vG nGaGK+t +  +a+ l  +  ++ll 
  KIR65526.1 190 VVLVVGVNGAGKTTTCGKIARVLVADGRSVLLG 222
                 6889***********999999887666666555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5   0.00039      0.39       2      30 ..     191     219 ..     190     222 .. 0.90
   2 ?   -0.9   0.0       1.4   1.3e+03      95     120 ..     270     297 ..     241     335 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
                 EEEE--TTSSHHHHHHHHHHHH...GGGE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkv 30 
                 v++ G  G GKtT + k++++l  +g +v
  KIR65526.1 191 VLVVGVNGAGKTTTCGKIARVLVADGRSV 219
                 7889******************9988776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.4
                 HH-EEEE---STTGGG-HHHHH..HHHH CS
    NTPase_1  95 eadviviDEiGkmElkskkfke..avee 120
                 + d ++iD  G++  k+  + e  +v++
  KIR65526.1 270 GVDTVLIDTAGRLQNKVGLMDElgKVKR 297
                 4555555555555555544443222444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.7   1.7e+03     100     121 ..     156     177 ..     122     183 .. 0.64
   2 ?   10.3   0.2   0.00071      0.71       1      23 [.     191     216 ..     191     297 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.7
                 SSTEEEEEEESSGGGSTHHHHS CS
         AAA 100 eskvivigatnrpdkldpallr 121
                  +++  ++a+  ++ ldpal r
  KIR65526.1 156 VDELRALLAAELVNALDPALDR 177
                 3457888888888999998876 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00071
                 EEEESSTTSSHHHHHHHHHHHH...T CS
         AAA   1 vllyGppGtGKTllakavakel...g 23 
                 vl++G  G GKT+++  +a+ l   g
  KIR65526.1 191 VLVVGVNGAGKTTTCGKIARVLvadG 216
                 799****************9864431 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2     0.028        28       2      17 ..     190     205 ..     189     221 .. 0.84
   2 ?    5.5   0.1     0.012        12      81     153 ..     269     344 ..     244     357 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.028
                 EEEEEESTTCCHHHHH CS
        cobW   2 vtvltGflGsGKTtLl 17 
                 v++++G  G+GKTt  
  KIR65526.1 190 VVLVVGVNGAGKTTTC 205
                 7899*********965 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.012
                 TT-SEEEEEECT.TTTHHHHHTT.....SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHH CS
        cobW  81 erldviliEttG.laePapvaft.....eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDll 153
                   +d +li t G l +   ++       ++ ++++  +d ++ v+Da+   +++ ++++ + + ++++  +vl+K D  
  KIR65526.1 269 TGVDTVLIDTAGrLQNKVGLM-DelgkvKRVVEKHGPIDETLLVLDATTG-QNGLEQARVFTEVVNVTG-VVLTKLDGT 344
                 4589********555555553.34677899999999***********665.788888888888887766.678899866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.71u 0.38s 00:00:01.08 Elapsed: 00:00:00.58
# Mc/sec: 2060.31
//
Query:       KIR65527.1  [L=262]
Description: aminoglycoside phosphotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-14   54.4   8.1    3.3e-13   50.1   7.1    2.5  2  APH             Phosphotransferase enzyme family
    1.3e-05   24.9   0.0    5.5e-05   22.8   0.0    1.8  2  Choline_kinase  Choline/ethanolamine kinase
     0.0028   17.4   1.4      0.066   13.0   0.4    2.5  2  HNH_3           HNH endonuclease


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.1   0.00093       5.6      25     116 ..      23     106 ..       6     108 .. 0.70
   2 !   50.1   7.1   5.6e-17   3.3e-13     100     228 ..      36     195 ..      33     208 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00093
                 EEEE-TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB- CS
         APH  25 lrrnpparaaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalpla 116
                 +rrn+ +     +++ +allr+L+  g+  +P++l   +d e ++ +   +e+  g+ +l    + +++e+l  ++ +l+ +h++++ ++p++
  KIR65527.1  23 VRRNAGP----WTPSVHALLRHLEYVGFtGAPRALG--MD-ERNREVLSYLEGECGEYPLA--PHWVTDEALVTVATMLRMFHDAQYGFAPPP 106
                 4444444....5778999********9988899998..34.44443444555555555554..688999****************99999986 PP

  == domain 2  score: 50.1 bits;  conditional E-value: 5.6e-17
                 HHHCCHHCH..-STTTB-SHHCHTCCHHHHHHCHHH.CCCGCCTCCHHHHHHHH....................HHHHHHHH--SSS-EEEE-SS-SGG CS
         APH 100 eflaalhqvd.paalpladflaqdlellrqlesata.rllaselldlleeleeq....................vlaalaallpgelptvllHgDlhpg 176
                 ++l++l  v+ + a +  ++ ++++e+l +le ++    la+ +    e+l                       v++ + +  p  + +v++H D  p+
  KIR65527.1  36 ALLRHLEYVGfTGAPRALGMDERNREVLSYLEGECGeYPLAPHWVT-DEALVTVatmlrmfhdaqygfapppgaVWRSFGPPPP--DTEVICHHDAAPH 131
                 5666666666555666667788888999999999884445555555.4444444667777888888888888888888888888..9************ PP

                 GEEEC..TTEEEEE---TT-EEEECCHHHHCCHHHCSCHCC..............CHCHHHHHHHH CS
         APH 177 NllvdpddgrvtGviDfedaglgpplyDlavllrswtseld..............peflaallray 228
                 N++++pd g + G+iDf++a++g ++yD+a+++++w+  ++              p+ l+ +++ay
  KIR65527.1 132 NVIWRPD-GTL-GLIDFDLASPGARIYDVAYAAWTWVPIFSdrdsitlgwrhpdrPRRLRLFADAY 195
                 *****66.444.9********************778776663333333333333355555555555 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.17     1e+03      66      95 ..      83     111 ..      57     114 .. 0.81
   2 !   22.8   0.0   9.2e-09   5.5e-05     146     185 ..     122     160 ..     117     171 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.17
                     HHHHHHHHHHHHHTTCHH.TTSSSS-HHHH CS
  Choline_kinase  66 eiskkiAkklaelHsleleseskespslwk 95 
                     e +  +A+ l+ +H+ +   +   + ++w+
      KIR65527.1  83 EALVTVATMLRMFHDAQY-GFAPPPGAVWR 111
                     667889********9998.66666666665 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 9.2e-09
                     EEE-S--SGGGEEE.-CTTEEEE--GTT-EEEEHHHHHHH CS
  Choline_kinase 146 vfcHnDlqegNillnkeekklvlIDFEYagynyrgfDlan 185
                     v cH D  ++N++    +++l lIDF  a++  r +D+a 
      KIR65527.1 122 VICHHDAAPHNVIW-RPDGTLGLIDFDLASPGARIYDVAY 160
                     78************.9*********************996 PP

>> HNH_3  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.4   1.1e-05     0.066       7      31 ..     109     133 ..     108     136 .. 0.88
   2 ?    2.6   0.0      0.02   1.2e+02      11      29 ..     194     222 ..     190     223 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
       HNH_3   7 iwelalGpiPeglvVdHiDgdksnn 31 
                 +w+++  p P+++v++H+D  + n+
  KIR65527.1 109 VWRSFGPPPPDTEVICHHDAAPHNV 133
                 8999988899*********888775 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.02
       HNH_3  11 alGpiPeg..........lvVdHiDgdks 29 
                 a+G iP +           vVdH+ g ++
  KIR65527.1 194 AYGLIPRDrhrlvrtirkRVVDHVEGIRR 222
                 56666633466666666689****99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1716.14
//
Query:       KIR65528.1  [L=469]
Description: ammonia channel protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.2e-125  418.5  38.4   2.6e-125  418.3  38.4    1.0  1  Ammonium_transp  Ammonium Transporter Family


Domain annotation for each model (and alignments):
>> Ammonium_transp  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.3  38.4  1.4e-129  2.6e-125       1     399 []      13     425 ..      13     425 .. 0.95

  Alignments for each domain:
  == domain 1  score: 418.3 bits;  conditional E-value: 1.4e-129
                      HHHHHHHHHHHHHHHHHHHHHHHHSSGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSCBSSSSSCE-................TTTTSCCGC CS
  Ammonium_transp   1 aflllsaalvifmqagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgkskgvsgfign................lglsaagvq 78 
                      ++ll+s+alv++m++g+al+++gl r+k vln++++++++++++++l++++G+s+afg++  v+gf+g                  g +a + +
       KIR65528.1  13 VWLLVSTALVLLMTPGLALFYGGLNRAKGVLNMMMMSFSAIGLISVLWWFYGFSVAFGTD--VNGFWGDpgaylgtktflaetdlWGATAENPS 104
                      7**********************************************************9..*********99999888777654444444444 PP

                      CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTTB-HHHHHHHHHHHHHHTHHHHHHHHHS.SSHHHHTT--.-SSSTTTTHHHHHHHHHHHHHHHS CS
  Ammonium_transp  79 detlldglfflfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvliDfAgstvVHlvggvagLaaalvlg 172
                         ++ ++f++fq++fa+++++++sga+++r+kf  +llf++ ++tlvy+pvahwvwg gg++    +  DfAg+t+VH+++g a+La+alvlg
       KIR65528.1 105 GIGVPLYVFMAFQMVFAVITVALISGAISDRAKFGGWLLFAFGWATLVYFPVAHWVWG-GGIIGGDIHALDFAGGTAVHINAGAAALAVALVLG 197
                      44556777**************************************************.77776655555************************ PP

                      -STTTTGTTTSS--GSBHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHH.HHHHHHHHHHHHHHHHHHHHHHHCSS-BHHHHHHHHHHHHHHHT CS
  Ammonium_transp 173 kregrfegkeeaikghnlpfavlGtllLwfgWfgFNaGsaltankrararaavtTllAaaagaltallisrlkegkinvlglanGilAGlVAiT 266
                      kr g+     e +k+hn+p++ lG+ lLwfgWfgFNaGs lt++++a   a+++T lA+aa+ l++l+++++k++k++++g+ +G++AGlVAiT
       KIR65528.1 198 KRLGWP---REGMKPHNIPLVALGAGLLWFGWFGFNAGSELTVDSVAGL-AFINTQLATAAAVLGWLAVEWIKDKKPTMVGASSGAVAGLVAIT 287
                      *****9...9***************************************.******************************************** PP

                      TTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHHHHHTSHHHC.....SSHSSTTGGGT-C.HHHHHHHHHH CS
  Ammonium_transp 267 aacavvepwgAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvv.....askisggllsgeg.kqlvvqligi 354
                      +ac+++ pw+A+++G+vAg+++ l+++ lk kl++dDsldvv+vH vgG +G+l  g+fa+++v+     + + s+gl++g+g  ql++q+i+ 
       KIR65528.1 288 PACGFIAPWAAVLLGIVAGAVCALAIA-LKYKLGYDDSLDVVGVHFVGGWIGSLWLGLFATNSVNsaitdVVGASDGLFYGGGvTQLGRQAIAG 380
                      **************************7.***************************************99988999999999999********** PP

                      HHHHHHHHHHHHHHHHHHHHHTTSB--HHHHHHSHHHHHHSSSSB CS
  Ammonium_transp 355 lvilayafvvtlilllllklllgLrvseeeeevglDvaehgetay 399
                      l++++++f+++++l++ +++++g r+++e+e +g+D+aeh+e++y
       KIR65528.1 381 LIVTVWSFGIAWLLAFAIEKTIGFRLKPEAEVEGIDLAEHAESGY 425
                      ******************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3537.20
//
Query:       KIR65529.1  [L=117]
Description: nitrogen regulatory protein P-II 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-38  132.0   2.1    1.2e-38  131.8   2.1    1.0  1  P-II      Nitrogen regulatory protein P-II
  ------ inclusion threshold ------
      0.023   14.8   0.1      0.031   14.4   0.1    1.3  1  DUF3240   Protein of unknown function (DUF3240)


Domain annotation for each model (and alignments):
>> P-II  Nitrogen regulatory protein P-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.8   2.1   1.3e-42   1.2e-38       1     102 []       9     110 ..       9     110 .. 0.99

  Alignments for each domain:
  == domain 1  score: 131.8 bits;  conditional E-value: 1.3e-42
                 EEEEEEGGGHHHHHHHHHHTTGGCEEEEEEEEEESTCCEEEECTTEEEEEEEEEEEEEEEEEEGGGHHHHHHHHHHHH-SSSTTSEEEEEEEESEEEET CS
        P-II   1 ieaiirpekleevkeaLekagvkgltvtevkGrGkqkghtelyrgaeyevellpkvkleivvsdedvekvveaiikaaktgeiGDGkiFvlpveeviri 99 
                 ++a+i+p +l++vkeaL+++gv gltv+ev+G+G+qkghte+yrgaey+ve+lpk+++e++ ++ dvek+v+ai+ aa+tg+iGDGk++v+ ve+v+r+
  KIR65529.1   9 VTAVIKPYQLDAVKEALHALGVAGLTVSEVQGYGRQKGHTEVYRGAEYTVEFLPKIRVEVLTDEIDVEKIVDAIVGAARTGKIGDGKVWVTGVEDVVRV 107
                 79************************************************************************************************* PP

                 TTT CS
        P-II 100 rtg 102
                 rtg
  KIR65529.1 108 RTG 110
                 **8 PP

>> DUF3240  Protein of unknown function (DUF3240)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   3.5e-06     0.031       9      88 ..      11      91 ..       5     108 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.5e-06
     DUF3240  9 LiaprelkddlvDlLlelpdllsGFtlldakghsrevslati...aEkvrGradkvvveivleeaalerllaeLrkavaktkv 88
                 ++++ + d++  +L +l   ++G t+++++g++r+  ++++   aE      +k+ ve+++ e ++e++++++  a    k+
  KIR65529.1 11 AVIKPYQLDAVKEALHAL--GVAGLTVSEVQGYGRQKGHTEVyrgAEYTVEFLPKIRVEVLTDEIDVEKIVDAIVGAARTGKI 91
                567777788899999999..7899***********98887652224555556678899************9998777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 802.23
//
Query:       KIR65530.1  [L=773]
Description: protein-PII uridylyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-10   38.8   0.4    2.1e-09   37.6   0.4    1.6  1  HD             HD domain
    6.2e-07   29.1   2.3       0.05   13.4   0.0    3.7  3  ACT            ACT domain
    2.1e-05   24.7   1.2      0.071   13.2   0.0    2.7  2  GlnD_UR_UTase  GlnD PII-uridylyltransferase
    0.00095   19.7   0.0        2.5    8.7   0.0    2.4  2  ACT_4          ACT domain
  ------ inclusion threshold ------
       0.02   14.9   0.6        5.3    7.1   0.0    2.8  2  ACT_6          ACT domain


Domain annotation for each model (and alignments):
>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.4   5.9e-13   2.1e-09       3     100 ..     436     531 ..     434     553 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 5.9e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHTTCCHHHHHHHH CS
          HD   3 eHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgld...ledvaklirehheswegkkrp 98 
                  H +++a+ a r  +d++    ++llll+a lHDiGkg++gd              H++ ga ++++v  r gl+   + ++  l+r h+   + ++r+
  KIR65530.1 436 RHLVQTAYEASRHTRDVD---RPDLLLLGAFLHDIGKGLPGD--------------HSTAGAPLAEAVAARIGLPepeVALIGTLVRLHLLLPDVATRR 517
                 799**************8...********************9..............************************************9988666 PP

                 .........H...H CS
          HD  99 .........r...g 100
                          r   +
  KIR65530.1 518 dlsdpvtiaRvaeA 531
                 44443333313334 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1       0.1   3.7e+02       3      14 ..      50      61 ..      48      72 .. 0.82
   2 !   11.8   0.1   4.2e-05      0.15       6      38 ..     609     641 ..     605     650 .. 0.87
   3 !   13.4   0.0   1.4e-05      0.05       2      38 ..     708     744 ..     707     755 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.1
                EEEEEESSTTHH CS
         ACT  3 lrvgvpDrPGlL 14
                l  ++pDrPG++
  KIR65530.1 50 LVPLLPDRPGVA 61
                56689*****97 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.2e-05
                 EEESSTTHHHHHHHHHHHTTSEEEEEEEEEEST CS
         ACT   6 gvpDrPGlLarvfgaladrgiNidsieqrssed 38 
                  ++Dr GlLa v+g la + + + s+  ++++ 
  KIR65530.1 609 AAADRRGLLATVAGCLALHRLEVLSADASTVDG 641
                 578**************************9976 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 1.4e-05
                 EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEEST CS
         ACT   2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssed 38 
                  l+++++D  GlL rv++al ++g  ++ + +++ + 
  KIR65530.1 708 LLELRAADAAGLLYRVTCALDEAGAQVRAARISTLGG 744
                 68999**************************999776 PP

>> GlnD_UR_UTase  GlnD PII-uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0     2e-05     0.071      10      42 ..     175     207 ..     163     216 .. 0.73
   2 !   10.0   0.3   0.00019      0.67      74     137 ..     214     288 ..     202     297 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2e-05
  GlnD_UR_UTase  10 ekarrgrsdt..llepniKlGpGGlRdiefivqvl 42 
                    + +++g+     lle ++K+ +GGlRd+ ++  ++
     KIR65530.1 175 RWQAHGE--LafLLEGDLKEAAGGLRDVGILRAIA 207
                    3333433..2359***************8887665 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00019
  GlnD_UR_UTase  74 eeakelreayrflrrlehrLqlladrqthrLpfdeeeqrrlaealgy.redkaa............fmkelfqhaer 137
                    +   ++r+a   l + + +L+ +a+r+ +rL ++  e+  +a++lg+ ++  +a            ++++++  a++
     KIR65530.1 214 ALRPAVRAAHLRLLDTRDALHEQAGRRVDRLVAQ--ERDGVAARLGLrQPAGDAasgavaphdgdvLLRRVAGDART 288
                    55566788999999********************..**********9633222222344444445555555555555 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00089       3.2       9      51 ..     606     646 ..     605     650 .. 0.84
   2 !    8.7   0.0   0.00071       2.5       8      41 ..     708     741 ..     706     748 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00089
       ACT_4   9 leveaedrkglLaditqviseekanivsvnaktrkkdglaeik 51 
                 + v a dr+glLa ++  ++ ++  + s  a+t   dg a ++
  KIR65530.1 606 VAVAAADRRGLLATVAGCLALHRLEVLSADAST--VDGRALVE 646
                 67999**************************99..56666554 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00071
       ACT_4   8 rleveaedrkglLaditqviseekanivsvnakt 41 
                  le+ a d  glL ++t ++ e++a++++ +++t
  KIR65530.1 708 LLELRAADAAGLLYRVTCALDEAGAQVRAARIST 741
                 58999***********************999987 PP

>> ACT_6  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.006        21       7      42 ..     608     643 ..     606     651 .. 0.83
   2 ?    7.1   0.0    0.0015       5.3       8      63 ..     712     770 ..     706     773 .] 0.78

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.006
       ACT_6   7 vtGpdrpGltasLtsvlaefgvnilDieqavihgrl 42 
                 v  +dr Gl+a ++++la ++  +l    +++ gr 
  KIR65530.1 608 VAAADRRGLLATVAGCLALHRLEVLSADASTVDGRA 643
                 5568********************999888888775 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0015
       ACT_6   8 tGpdrpGltasLtsvlaefgvnilDieqavihgrlsLgllvsgp...edalarlekaLl 63 
                   +d +Gl+ ++t +l e g+++   + ++++g+++ +  + g    +d+ arle+a+l
  KIR65530.1 712 RAADAAGLLYRVTCALDEAGAQVRAARISTLGGDVVDAFYLVGGwpaDDERARLEAAVL 770
                 56899****************************99865544444365667777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 5289.98
//
Query:       KIR65531.1  [L=518]
Description: signal recognition particle [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-69  232.6   0.0    4.7e-69  232.0   0.0    1.3  1  SRP54            SRP54-type protein, GTPase domain
    1.3e-31  109.1   0.8    3.5e-31  107.7   0.8    1.8  1  SRP_SPB          Signal peptide binding domain
    6.9e-22   77.5   0.2    1.6e-21   76.3   0.2    1.7  1  SRP54_N          SRP54-type protein, helical bundle domain
    5.3e-07   29.7   0.6    2.6e-06   27.5   0.1    2.4  3  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
    9.6e-06   25.3   0.6    5.6e-05   22.8   0.5    2.2  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
    1.1e-05   25.8   0.0    2.5e-05   24.6   0.0    1.6  1  AAA_22           AAA domain
    0.00052   19.8   1.3     0.0013   18.4   1.3    1.7  1  AAA_30           AAA domain
    0.00059   19.8   0.0     0.0011   18.8   0.0    1.4  1  APS_kinase       Adenylylsulphate kinase
    0.00076   18.8   0.0     0.0016   17.8   0.0    1.5  1  Zeta_toxin       Zeta toxin
     0.0013   18.9   0.0     0.0029   17.8   0.0    1.7  1  AAA_33           AAA domain
     0.0021   18.0   0.3       0.21   11.5   0.0    2.4  2  NTPase_1         NTPase
     0.0058   15.9   0.6      0.092   11.9   0.0    2.6  3  ArsA_ATPase      Anion-transporting ATPase
     0.0064   16.4   0.0      0.019   14.9   0.0    1.7  2  AAA_31           AAA domain
     0.0068   17.0   0.0      0.015   15.8   0.0    1.6  1  AAA_18           AAA domain
     0.0071   16.2   0.0      0.023   14.6   0.0    1.9  1  MobB             Molybdopterin guanine dinucleotide synthesis
     0.0083   16.2   1.3      0.063   13.4   0.4    2.6  1  MMR_HSR1         50S ribosome-binding GTPase
     0.0091   15.3   0.0      0.015   14.6   0.0    1.2  1  6PF2K            6-phosphofructo-2-kinase
  ------ inclusion threshold ------
       0.01   16.2   0.0       0.04   14.3   0.0    2.0  2  AAA_16           AAA ATPase domain
      0.012   15.3   0.0      0.021   14.5   0.0    1.4  1  Thymidylate_kin  Thymidylate kinase
      0.013   15.3   0.0        1.4    8.7   0.0    2.3  2  CLP1_P           mRNA cleavage and polyadenylation factor CLP
      0.031   14.2   0.6      0.058   13.3   0.6    1.4  1  NACHT            NACHT domain
      0.034   13.6   0.1        2.1    7.7   0.0    2.4  2  SRPRB            Signal recognition particle receptor beta su
      0.039   13.8   0.4       0.28   11.0   0.0    2.2  2  AAA_26           AAA domain
      0.074   12.6   4.2        1.6    8.3   2.1    2.9  2  AAA_25           AAA domain
      0.087   12.6   0.0       0.19   11.5   0.0    1.5  1  ATP_bind_1       Conserved hypothetical ATP binding protein
      0.099   13.1   0.0       0.33   11.4   0.0    2.0  1  AAA              ATPase family associated with various cellul
        0.1   12.6   0.0        0.2   11.6   0.0    1.5  1  AAA_5            AAA domain (dynein-related subfamily)
       0.14   12.2   0.1       0.26   11.3   0.1    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.14   11.9   0.0       0.62    9.7   0.0    2.0  1  AAA_24           AAA domain
       0.21   11.0   0.0        1.9    7.8   0.0    2.1  2  KTI12            Chromatin associated protein KTI12


Domain annotation for each model (and alignments):
>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.0   0.0   7.8e-72   4.7e-69       1     196 []     100     298 ..     100     298 .. 0.97

  Alignments for each domain:
  == domain 1  score: 232.0 bits;  conditional E-value: 7.8e-72
                 SEEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTS...CHHHHHHHHHHHHHHTTSSEEEEEE--SST CS
       SRP54   1 pnvillvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeea...dpaavakeavekakeekidvvlvDTaGrlq 96 
                 p+vi+l+GlqG+GKTt ++KLa++lk++g+++llvaaD  R+ Av QL++l+ ++gv+v++ + ++   dp++va++++e+ak+   d+v+vDTaGrl 
  KIR65531.1 100 PTVIMLAGLQGSGKTTLAGKLARWLKAQGHQPLLVAADLQRPNAVGQLQVLGGRAGVEVYAPEPGNgtgDPVQVARASIEHAKRAARDIVIVDTAGRLG 198
                 689**********************************************************55444446****************************** PP

                 THHHHHHHHHHHHHHHSSSEEEEEEETTBHTHHHHHHHHHHHHSSCSEEEEESTTSSSSTTHHHHHHHHHTS-EEEEE-SSSTTGEEE--HHHHHHHHH CS
       SRP54  97 ndkelmeelkkikkvvkpdevllvldattgqeavkqakaFkeavgitgviltklDgdakgGaalsiaaelklPikfigvGekiedleefdperlvsrll 195
                 +d+e+m++ ++i+++v+pdev++v+da++gq+av++a+aF++ vgitgv+l+klDgda+gGaals+++ +++Pi f ++Gek+ed+++f+p+r++sr+l
  KIR65531.1 199 IDAEMMRQAADIRDAVDPDEVIFVIDAMVGQDAVRTAEAFRDGVGITGVVLSKLDGDARGGAALSVREVTGQPILFASTGEKLEDFDVFHPDRMASRIL 297
                 **************************************************************************************************9 PP

                 T CS
       SRP54 196 g 196
                 g
  KIR65531.1 298 G 298
                 5 PP

>> SRP_SPB  Signal peptide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.8   5.9e-34   3.5e-31       1      99 []     330     428 ..     330     428 .. 0.94

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 5.9e-34
                 SSCTHHHHHHHHHHHCCCCCCHHHHCCC......H...CCCCCHHHHHHHHHTTSBHHHHHSGCG-..HHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH CS
     SRP_SPB   1 eftlrdlleqlqqikkmGplskllsmiPgmsae.akaeeeaekklkrieaiidSMTkeErdspekllkesRkrRiArGsGtsvqevnellkqfeqmkkm 98 
                 +ftl+d+l+ql  +++mGp+ ++l m+Pgm+++  +  e ++k+++r+ aii+SMT++Er++p+ +++ sR+ RiA+GsG++v +vn+ll++f + +km
  KIR65531.1 330 QFTLEDFLDQLIAVRRMGPIANVLAMMPGMGQMkDQLAELDDKHFDRVTAIIRSMTPAERTNPK-IINGSRRARIANGSGVTVMDVNQLLNRFADAQKM 427
                 6******************************99633346779**********************.999******************************* PP

                 T CS
     SRP_SPB  99 m 99 
                 m
  KIR65531.1 428 M 428
                 9 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.2   2.7e-24   1.6e-21       1      75 []       5      82 ..       5      82 .. 0.96

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 2.7e-24
                HHHHHHHHHHHHCCSSCGHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHCTTS....S-HHHHHHHHHHHHH CS
     SRP54_N  1 LgkklnsalkklsgkskideedleealkeleeaLleaDVgvkvvkklienvkkkavgekk....lkpkqqvkkivkdeL 75
                L+++l+++++kl+gk++++++d++++ +e++ aLleaDV+++vvk +i+nvk++a g  +    l+p+qq++kiv++eL
  KIR65531.1  5 LSDRLSGIFTKLRGKGRLTDADIDATAREIRLALLEADVALPVVKGFIANVKERARG-AEvsqaLNPAQQIVKIVNEEL 82
                799**************************************************9999.66699999************8 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       4.7   2.8e+03      34      53 ..      24      44 ..       9      85 .. 0.58
   2 !   27.5   0.1   4.3e-09   2.6e-06       9      88 ..     110     256 ..     102     273 .. 0.78
   3 ?   -1.8   0.0       5.1     3e+03      32      69 ..     312     372 ..     303     427 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4.7
                EEEESSCCCCH.HTTEB-HHH CS
                xxxxxxxxxxx.xxxxxxxxx RF
        CbiA 34 DaDpqannlai.leglendie 53
                DaD +a++ +i l  le d++
  KIR65531.1 24 DADIDATAREIrLALLEADVA 44
                555555555554333333333 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 4.3e-09
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH...HTTEB-HHHH.................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx.................................................. RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlai...leglendiep.................................................. 54 
                 G+GKTtla +Lar l+ +g++ llv aD q++n+     + g +                                                       
  KIR65531.1 110 GSGKTTLAGKLARWLKAQGHQPLLVAADLQRPNAVGqlqVLGGRA---Gvevyapepgngtgdpvqvarasiehakraardivivdtagrlgidaemmr 205
                 9********************************764545333333...255588889**********************************99998888 PP

                 .....................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS.. CS
                 .....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 .....................dlkrllellealgkkkalllkiagvvlnrvdgen 88 
                                        +  ++++ea++ +    + i gvvl + dg++
  KIR65531.1 206 qaadirdavdpdevifvidamVGQDAVRTAEAFRDG----VGITGVVLSKLDGDA 256
                 888888888666666666555233335555555555....788888888888875 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 5.1
                 EEEEEESSCCCCHHTTEB-HHHH.......................CCHCCCHHHHHHCHC CS
                 xxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxx RF
        CbiA  32 lvDaDpqannlaileglendiep.......................dlkrllellealgkk 69 
                 ++D D   +++a l+g e++  +                       ++ +++  l++l+ k
  KIR65531.1 312 AFDSDQKEKMTAKLMGGEQFTLEdfldqliavrrmgpianvlammpGMGQMKDQLAELDDK 372
                 5677777777775555444444456666777777777777777777666666666666655 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.5   9.4e-08   5.6e-05       2     151 ..     102     253 ..     101     268 .. 0.82
   2 ?   -2.5   0.0       5.4   3.2e+03     114     136 ..     407     429 ..     392     434 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 9.4e-08
                 EEEEEESTTCCHHHHHHHHH..CT--SS-EEEEESS-SSCHCCCCCC...HCCCT.EEEETTTTECCHCTT-HHHHHHHHHHHHTT-SEEEEEECT.TT CS
        cobW   2 vtvltGflGsGKTtLlnhll..enraglklavivNefgevsiDaell...retgveivelenGciCctlredllkelealeereerldviliEttG.la 94 
                 v++l+G  GsGKTtL  +l    +++g +  ++  +++  +  ++l     ++gve+   e G       + + +++e+ ++     d++++ t G l 
  KIR65531.1 102 VIMLAGLQGSGKTTLAGKLArwLKAQGHQPLLVAADLQRPNAVGQLQvlgGRAGVEVYAPEPGNGTGDPVQVARASIEHAKRAA--RDIVIVDTAGrLG 198
                 7899**************9999899*************9766666543444447888888888887775556666666655555..7*********998 PP

                 THHHHHTTSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HH CS
        cobW  95 ePapvafteeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtD 151
                   a+++ ++ ++++++  d v++v+Da  + ++  +++e ++d++  +  +vl+K D
  KIR65531.1 199 IDAEMMRQAADIRDAVDPDEVIFVIDA-MVGQDAVRTAEAFRDGVGITG-VVLSKLD 253
                 88888899*******************.566899999999999999987.4678887 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.4
                 EEEEEEETTTH.CCHCCHHHHHH CS
        cobW 114 avvavvDaknleaeeekieekae 136
                 + v+v+D+++l ++  + ++ ++
  KIR65531.1 407 SGVTVMDVNQLLNRFADAQKMMK 429
                 56899999998655555544444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.2e-08   2.5e-05       5     118 ..     100     213 ..      96     228 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 4.2e-08
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka.....erlsseellealeqalraravielliiD 98 
                  +++++ G  G+GKTtl+ +l+++l+    a+ ++p +v  +l+ ++   +l + l    g+e  a      +++  ++ +a  ++++++a+  ++i+D
  KIR65531.1 100 PTVIMLAGLQGSGKTTLAGKLARWLK----AQGHQPLLVAADLQRPNAVGQL-QVLGGRAGVEVYApepgnGTGDPVQVARASIEHAKRAAR-DIVIVD 192
                 57899********************5....55689999********955555.889999998888887666555566666555555666666.9***** PP

      AAA_22  99 Eaqhlr.seealeeLrsllnl 118
                  a +l   +e++++  ++ + 
  KIR65531.1 193 TAGRLGiDAEMMRQAADIRDA 213
                 *****6558887777666663 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.3   2.2e-06    0.0013      13     124 ..      95     224 ..      93     252 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.2e-06
      AAA_30  13 lltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa...................eelgieastiakllkrlk.........gr 83 
                 +++++  v +l G  G+GKtt+ ++l++ ++a+g++ +++A   +  ++++                   +++g             +         ++
  KIR65531.1  95 FAKQPPTVIMLAGLQGSGKTTLAGKLARWLKAQGHQPLLVAADLQRPNAVGqlqvlggragvevyapepgNGTG-------------DpvqvarasiEH 180
                 5666777999***********************87777766666555555522244433333222222222333.............133333344444 PP

      AAA_30  84 arlepgtllivDEagmv..dtkqlaallkaaekag.akvilvGD 124
                 a+ ++++++ivD ag +  d++++++ +++ ++ +  +vi+v D
  KIR65531.1 181 AKRAARDIVIVDTAGRLgiDAEMMRQAADIRDAVDpDEVIFVID 224
                 567888*********99555666666655555544466776655 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.9e-06    0.0011       2      39 ..     100     137 ..      99     148 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.9e-06
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHH CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGd 39 
                 ++v++l+Gl gsGK+t+a +l++ L+++g++  l+  d
  KIR65531.1 100 PTVIMLAGLQGSGKTTLAGKLARWLKAQGHQPLLVAAD 137
                 579**************************987766655 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.6e-06    0.0016      13      53 ..      97     138 ..      89     143 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.6e-06
  Zeta_toxin  13 qerPklillgGqpGAGKselaellkdele.rqgnvvrldpDd 53 
                 ++ P++i+l+G +G+GK++la +l++ l+ ++ + + + +D 
  KIR65531.1  97 KQPPTVIMLAGLQGSGKTTLAGKLARWLKaQGHQPLLVAADL 138
                 578***********************9995556666666665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.9e-06    0.0029       1      31 [.     102     137 ..     102     222 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.9e-06
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.....avllssd 31 
                 +++l Gl+GsGK+tla +l++ l+       l++ d
  KIR65531.1 102 VIMLAGLQGSGKTTLAGKLARWLKaqghqPLLVAAD 137
                 89***************9976665444654444444 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00035      0.21       2      27 ..     103     128 ..     102     131 .. 0.92
   2 ?    4.1   0.1     0.064        38      83     134 ..     172     225 ..     166     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00035
                 EEEE--TTSSHHHHHHHHHHHH...G CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssg 27 
                 +++ G +G+GKtTl  k+++ lk +g
  KIR65531.1 103 IMLAGLQGSGKTTLAGKLARWLKAQG 128
                 799*******************9987 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.064
                 HHHHHHHHHHH.HHH-EEEE---STTGGG-HHHHHH..HHHHHTTTSEEEEE--S CS
    NTPase_1  83 elalealrkal.seadviviDEiGkmElkskkfkea..veevLksekpvlavihr 134
                 ++a +++++a     d++++D  G++   ++ +++a  +++++++++ v++vi  
  KIR65531.1 172 QVARASIEHAKrAARDIVIVDTAGRLGIDAEMMRQAadIRDAVDPDE-VIFVIDA 225
                 5677778888757789**********999999998644788888776.6666655 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00015     0.092       3      38 ..     102     137 ..     100     139 .. 0.95
   2 ?    1.2   0.0      0.27   1.6e+02     148     208 ..     333     391 ..     324     404 .. 0.76
   3 ?   -3.5   0.1       7.5   4.5e+03     149     175 ..     415     437 ..     410     452 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
                  EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase   3 vilvgGKGGVGKttvsaatavklsekgkkvllistD 38 
                  vi+++G  G GKtt++  +a +l  +g++ ll++ D
   KIR65531.1 102 VIMLAGLQGSGKTTLAGKLARWLKAQGHQPLLVAAD 137
                  89*******************************988 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.27
                  HHHHHHHHHHHHHHHHHHHHHHCCCSHCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEE CS
  ArsA_ATPase 148 leklleklvklkeklsplakqlvkllglggvsieealeeleetkeeikkveeiltdperts 208
                  le +l++l+ +++ ++p+a+ l  + g+g++  ++ +e  ++ ++++ ++   +t  ert 
   KIR65531.1 333 LEDFLDQLIAVRR-MGPIANVLAMMPGMGQM-KDQLAELDDKHFDRVTAIIRSMTPAERTN 391
                  6778888888887.99999999666555554.45466666778899999999998888886 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 7.5
                  HHHHHHHHHHHHHHHHHHHHHCCCSHC CS
  ArsA_ATPase 149 eklleklvklkeklsplakqlvkllgl 175
                  ++ll+++ + ++    ++kq+ +++gl
   KIR65531.1 415 NQLLNRFADAQK----MMKQMGGMMGL 437
                  455555555554....55555555554 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.2e-05     0.019      12      44 ..     110     142 ..     101     162 .. 0.87
   2 ?   -2.5   0.0       6.9   4.1e+03     118     133 ..     186     201 ..     171     210 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.2e-05
      AAA_31  12 GvGKTTtsvnlaaalaklgkkvLlvDlDpQana 44 
                 G GKTT + +la +l  +g++ Llv +D Q   
  KIR65531.1 110 GSGKTTLAGKLARWLKAQGHQPLLVAADLQRPN 142
                 89***************************9754 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.9
      AAA_31 118 YDyiiiDcpPsLgllt 133
                  D++i+D+   Lg+ +
  KIR65531.1 186 RDIVIVDTAGRLGIDA 201
                 6999999999998755 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.6e-05     0.015       1      21 [.     103     123 ..     103     140 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.6e-05
      AAA_18   1 IlltGtpGvGKttlakeLskr 21 
                 I+l+G +G+GKttla  L++ 
  KIR65531.1 103 IMLAGLQGSGKTTLAGKLARW 123
                 99****************875 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.9e-05     0.023       1      29 [.     102     130 ..     102     137 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.9e-05
        MobB   1 vlgivgksgsGKTtLleklipelkarglr 29 
                 v+ ++g +gsGKTtL  kl ++lka+g +
  KIR65531.1 102 VIMLAGLQGSGKTTLAGKLARWLKAQGHQ 130
                 6899**********************976 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.4   0.00011     0.063       2      87 ..     103     229 ..     102     249 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00011
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE.......................................EEEEECGGCSSHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke.......................................ielvDtpGliega 60 
                 ++++G   +GK+tL  +l +  ka+  +   +  d ++ +   ++ +                                       i++vDt+G +   
  KIR65531.1 103 IMLAGLQGSGKTTLAGKLARWlKAQGHQPLLVAADLQRPNAV-GQLQvlggragvevyapepgngtgdpvqvarasiehakraardIVIVDTAGRLG-- 198
                 678888888888888888863222222222333333333332.1111222222333333333344444444444444444444444********665.. PP

                 HHHHHHHHHHHHHHC...TSEEEEEEETT..T CS
    MMR_HSR1  61 seekglgkaflalee...adlillvvdas..e 87 
                   + ++ ++ +++++    d +++v+da   +
  KIR65531.1 199 -IDAEMMRQAADIRDavdPDEVIFVIDAMvgQ 229
                 .34444444444554322599******76432 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.5e-05     0.015      10      43 ..      97     130 ..      90     146 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.5e-05
                 ..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT-- CS
       6PF2K  10 knsklvivlvGLpargKtyiskkltrylkwlgvr 43 
                 k+ ++vi+l GL   gKt+++ kl r+lk  g++
  KIR65531.1  97 KQPPTVIMLAGLQGSGKTTLAGKLARWLKAQGHQ 130
                 56789************************98875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   6.7e-05      0.04      23      51 ..      98     127 ..      91     226 .. 0.85
   2 ?   -1.5   0.0       4.7   2.8e+03      91     127 ..     364     422 ..     302     426 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.7e-05
      AAA_16  23 rp.elvllsGesGvGKsslvrellralekd 51 
                 +p  +++l G +G+GK++l+ +l+r l+++
  KIR65531.1  98 QPpTVIMLAGLQGSGKTTLAGKLARWLKAQ 127
                 444899******************866666 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4.7
      AAA_16  91 saeleawrekleealaavpelagaea......................srllellkrll 127
                 ++++e +++++++++a+++++++ae+                       ++++ll+r++
  KIR65531.1 364 DQLAELDDKHFDRVTAIIRSMTPAERtnpkiingsrrariangsgvtvMDVNQLLNRFA 422
                 22555555556666666666666666555555555555555555555566666666665 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.5e-05     0.021       3      26 ..     107     130 ..     105     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.5e-05
                      ESTTSSHHHHHHHHHHHHHHTTE. CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeegik 26 
                      Gl G+GKtt a +l+++lk++g++
       KIR65531.1 107 GLQGSGKTTLAGKLARWLKAQGHQ 130
                      99********************98 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0023       1.4       2      34 ..     108     140 ..     107     145 .. 0.90
   2 ?    4.1   0.0     0.061        36      91     137 ..     174     222 ..     168     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0023
      CLP1_P   2 pkdsGKSTlarlLlNyalrkgrkpvyvDlDvGq 34 
                  + sGK+Tla  L+ ++  +g++p++v +D+  
  KIR65531.1 108 LQGSGKTTLAGKLARWLKAQGHQPLLVAADLQR 140
                 578************************999865 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.061
      CLP1_P  91 veekleenkkakasgliIntpGwv..kglgaellleliealepdvvvvl 137
                 ++  +e  k+a+++++i++t G    + + ++   ++ +a+ pd v+++
  KIR65531.1 174 ARASIEHAKRAARDIVIVDTAGRLgiDAEMMRQAADIRDAVDPDEVIFV 222
                 55567788899***********751145566667778889999888876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.6   9.7e-05     0.058       2      27 ..     102     127 ..     101     136 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.7e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaeg 27 
                 +++l G +GsGKTtL+ kla+ ++++
  KIR65531.1 102 VIMLAGLQGSGKTTLAGKLARWLKAQ 127
                 6899****************988754 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0036       2.1       5      24 ..     102     121 ..      97     131 .. 0.84
   2 ?    3.3   0.0     0.083        50      49      99 ..     186     238 ..     171     248 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0036
                 EEEEE-STTSSHHHHHHHHH CS
       SRPRB   5 avllvGlsdsGKTslftrLt 24 
                  ++l+Gl+ sGKT+l  +L 
  KIR65531.1 102 VIMLAGLQGSGKTTLAGKLA 121
                 4779***********99886 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.083
                 TT-SEEEETT-GCCSHHHHHHHHHHGG...EEEEEEEEETTS-HHHHHHHHHHH CS
       SRPRB  49 skltliDfPGheklrqklleklkakss...lkglvfvvDStidpkevkevAEll 99 
                   + ++D  G   +  +++ +  + +       ++fv+D+ + +  v+ +AE +
  KIR65531.1 186 RDIVIVDTAGRLGIDAEMMRQAADIRDavdPDEVIFVIDAMVGQDAVR-TAEAF 238
                 556778888888888888877666555211468******999987765.67766 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1         1   6.1e+02       3      29 ..     103     128 ..     101     133 .. 0.80
   2 ?   11.0   0.0   0.00047      0.28      90     182 ..     177     270 ..     162     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1
      AAA_26   3 ifvtgtdtgvGKTvvslgLvralkrkg 29 
                 i+++g  +g+GKT+++  L+r lk++g
  KIR65531.1 103 IMLAGL-QGSGKTTLAGKLARWLKAQG 128
                 566665.69***********9998776 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00047
      AAA_26  90 kivkelekdadivvVEGagglgvpiteellnadiaknlga.pvilVargglgtinqllltiealrqknvrvlGvilNkvrnpe...nvetlekksgi 182
                 +i ++ +++ div+V+ ag lg      +  adi  + +  +vi+V+ ++ g  ++++ t+ea+r+ +v ++Gv+l+k+  ++   +  ++++ +g 
  KIR65531.1 177 SIEHAKRAARDIVIVDTAGRLGIDAEMMRQAADIRDAVDPdEVIFVIDAMVG--QDAVRTAEAFRD-GVGITGVVLSKLDGDArggAALSVREVTGQ 270
                 3336788999***********988888888888888886527*****99998..69999******9.9**********9888545555555555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.11        66      84     138 ..       3      60 ..       2      65 .. 0.84
   2 ?    8.3   2.1    0.0027       1.6      34      55 ..     101     122 ..      99     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.11
      AAA_25  84 delrrRlravgealrddarllvldlagv.eslpLfakdrggtl..ltadvdaleaaie 138
                 d+l  Rl+ ++++lr ++rl+  d++    +++L+ ++++ +l  ++++++++ ++++
  KIR65531.1   3 DTLSDRLSGIFTKLRGKGRLTDADIDATaREIRLALLEADVALpvVKGFIANVKERAR 60 
                 68999********************9999******99999988666777776666655 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0027
      AAA_25  34 elallaGapgtGKttlaldlal 55 
                 ++++laG +g+GKttla  la 
  KIR65531.1 101 TVIMLAGLQGSGKTTLAGKLAR 122
                 589**************99986 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00031      0.19       2      30 ..     106     134 ..     105     138 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00031
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgrsvavv 30 
                 +G  GsGKtt+ g+l+ +l+++g ++ +v
  KIR65531.1 106 AGLQGSGKTTLAGKLARWLKAQGHQPLLV 134
                 7999*******************999888 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00055      0.33       1      70 [.     103     197 ..     103     226 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00055
                 EEEESSTTSSHHHHHHHHHHHHTHE.................EEEEETTTCSSS...................STTHHHHHHHHHHHHHHHTSTSEEEE CS
         AAA   1 vllyGppGtGKTllakavakelgve.................fleisgsellsk...................yvgesekkirelfkeakekakpsilf 63 
                 ++l G  G GKT+la  +a+ l+++                            +                     g+  +  r+ +++ak+ a   i++
  KIR65531.1 103 IMLAGLQGSGKTTLAGKLARWLKAQghqpllvaadlqrpnavG----------QlqvlggragvevyapepgnGTGDPVQVARASIEHAKRAA-RDIVI 190
                 6899****************99765555555533333333330..........2334444444444444444477777777777777777776.77777 PP

                 EETGGGH CS
         AAA  64 iDEidal 70 
                 +D + +l
  KIR65531.1 191 VDTAGRL 197
                 7766666 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00034       0.2       2      47 ..     103     149 ..     102     163 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00034
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrrei 47 
                 ++L G +G+gK++la +la+ l  +  +  +  +d+++ + +g++++
  KIR65531.1 103 IMLAGLQGSGKTTLAGKLARWLkAQGHQPLLVAADLQRPNAVGQLQV 149
                 689*******************7666666666666666666666555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00044      0.26      14      45 ..      95     126 ..      73     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
                 HHHCHTEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  14 lakalgdvilLeGdLGaGKTtlvrglakalgv 45 
                 +ak+  +vi+L G  G+GKTtl+ +la+ l+ 
  KIR65531.1  95 FAKQPPTVIMLAGLQGSGKTTLAGKLARWLKA 126
                 34434678******************998865 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0     0.001      0.62       4      91 ..     102     209 ..     100     259 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.001
      AAA_24   4 kiliyGpsgiGKTtlakel.......gpkplfi.......dtekGlksldadkfpdie..........swedfldevvel..aaeladyktlviDtide 76 
                  i++ G +g+GKTtla +l       g +pl++       +  + l+ l ++ ++++            ++  +         a+ a  +++++Dt++ 
  KIR65531.1 102 VIMLAGLQGSGKTTLAGKLarwlkaqGHQPLLVaadlqrpNAVGQLQVLGGRAGVEVYapepgngtgdPVQVARA----SieHAKRAARDIVIVDTAGR 196
                 799***************977777776677766333333311122222222222222244444433222222222....14455556667777777777 PP

      AAA_24  77 leelclaevirqnek 91 
                 l   ++ae++rq+ +
  KIR65531.1 197 L--GIDAEMMRQAAD 209
                 7..777777776665 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0032       1.9       4      35 ..     103     134 ..     100     143 .. 0.85
   2 ?    0.5   0.0      0.58   3.5e+02     187     254 ..     361     428 ..     321     433 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0032
                 EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE CS
       KTI12   4 vvltGlPssGKstrakeLakaleeekrsvvvi 35 
                 ++l Gl  sGK+t+a +La+ l++++ +  ++
  KIR65531.1 103 IMLAGLQGSGKTTLAGKLARWLKAQGHQPLLV 134
                 7899*******************988776555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.58
                 ---HHHHHHHHHHHHHHHHHHH....HTT--HHH.................HHHHHHHHHHHHHHHT.T CS
       KTI12 187 aeanflqeLdketseivkeileaqksavaidkltlpgsseslelpak.kltlaeLsrlrrqFvklnkak 254
                 + ++ l eLd +  + v++i++ ++ a++++   ++gs+ + ++++   +t+  +++l  +F   +k+ 
  KIR65531.1 361 QMKDQLAELDDKHFDRVTAIIRSMTPAERTNPKIINGSR-RARIANGsGVTVMDVNQLLNRFADAQKMM 428
                 567889999999999999999988888887777777666.55555554799999999999999888844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                       111  (0.00619109); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 3503.27
//
Query:       KIR65532.1  [L=193]
Description: hypothetical protein TK50_09065 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-27   94.4   0.5    7.3e-27   94.0   0.5    1.1  1  Uma2      Putative restriction endonuclease


Domain annotation for each model (and alignments):
>> Uma2  Putative restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.5     4e-31   7.3e-27       4     152 ..      18     161 ..      15     182 .. 0.83

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 4e-31
                 HHHHHHSTTEEEEETTS-EEE.EETSHHHHHHHHHHHHHHHHHHHHH-SEEEEET.T--EE-TTS-EE--SEEEEEHHHHTS-HHHHSS-SS--SEEEE CS
        Uma2   4 flqlpeneevryelvdGeliemsplggeheriaalLaallgnwlrerklgrvfas.elgvrlpeeserePDvavvrgeweresrriweelpaaPdlvvE 101
                 + +lp   +  yel++G+li+ + ++  h++++ +L+ +l+  + +    ++++s +l +r+++++e+ PDv+v+r++  ++s      + ++  l+vE
  KIR65532.1  18 LGDLP--KDLPYELINGRLIV-PSPTALHQELCVELLLTLRVNCPP----EYLVSfDLSMRVDRRNEPHPDVVVIRRRHADRSPV----PVEDALLAVE 105
                 55666..7889**********.7778**************9**999....999999********************885555555....69999***** PP

                 E--TTS-.HHHHHHHHHHHHTT-SEEEEEETTTTE..EEEE-TT......S--EEE CS
        Uma2 102 Vlspsts.kdleeKlelYaalgvpeywlvdpkert..vevfrle.dg.eyqlvevl 152
                 V+sp+++ +d+++K ++Ya +gv+ yw+vdp +++  ++ ++l  +g ey++v   
  KIR65532.1 106 VVSPTSTfRDMYDKAKVYAHAGVRSYWVVDPLQERvtLTEYTLAaGGrEYEQVTHT 161
                 ******************************77776226678898533688887762 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1495.98
//
Query:       KIR65533.1  [L=359]
Description: amidohydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-14   52.3   0.3      3e-13   49.8   0.3    1.9  1  Amidohydro_1  Amidohydrolase family
    0.00011   21.8  14.3      0.018   14.5   6.8    3.3  2  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.3   3.3e-17     3e-13       1     321 [.      41     338 ..      41     358 .. 0.76

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 3.3e-17
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH.......HHHHHHHHHHTSSSEEEEEEESSEGGSGC CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst.......giealleaaeelplglrilggkvsldrgs 90 
                   +vlPGl DaH Hl     rg         p t+   ++ ++   + +G+  ++d+g   ++       g+++l++a ++ +  +r ++    ++ + 
    KIR65533.1  41 FVLPGLTDAHCHLG--IARGG-------APITSLDQARAAAHVDVDAGVLAIRDAGSPYPYpeldddpGLPRLARAGRH-VAPPRRYLRDIGVEVDA 127
                   79***********5..66775.......566666666666666778899999999998888999988999999999999.46788888877777788 PP

                   CCSHHHHHHHHHHHHHHHHHHCTTTCEE.EEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTT CS
  Amidohydro_1  91 aetskasreklkagaaetikgkadgvvk.valapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaeslglld 186
                   +++  +++ + +ag   ++k  +d + +  + + ++a+ +  +++ +a+ +a+++++  a+H+ ++ + ve +++a+++++ehgt l+        d
    KIR65533.1 128 PQVAATVAAQAAAG-NGWVKLVGDWI-DrGTGDLAPAWDA--DTMTAAVAAAHAAGARAAVHTFSE-AGVEIMVRAGVDSVEHGTGLSL-------D 212
                   88888888888888.67777555555.4356666655555..8********************554.55579*****************.......9 PP

                   HCCEEEHCTCEEEHH.....HHHHHHHHHHHHCEEHHHHHHHHSEHHHHHH.HHHHHHTSCEEEEEECTTSSCCGGHHHHHHHHHHHHHHCCTTTTH CS
  Amidohydro_1 187 eiklilahgvhltpt.....eaellkerlkeagvahcpfsnsilrsgreal.rkaldeGvkvglgtDgaasgnslnlleelrlalklqrgllyedee 277
                    i l++ +g+ l pt     ++  ++e+  +a+ + +++  + lr+  + + r a ++Gv + +gtD  + ++ +   ee+ l+           ++
    KIR65533.1 213 LIDLMARQGTALVPTminirTFGGIAEQ-ARAKFPGYADHMLALRDRFPEVvRSAYEAGVPIYVGTDAGGGIDHGLAAEEMLLLH----------SQ 298
                   9************996655533333333.35566688888888888887651667777*********778888885555555554..........48 PP

                   CHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCT CS
  Amidohydro_1 278 gglslkealrmaTingAkalglddkvGsievGkdADlvvvdldi 321
                   +g+++ ++l++a++ + + lg++   G + +G  ADl+v  +d+
    KIR65533.1 299 AGMPAVDVLAAASWRAREWLGFP---G-LVEGGLADLTVYPTDP 338
                   99********************7...8.556889***9984443 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   2.3   8.6e-05      0.77       6      21 ..      38      53 ..      37     141 .. 0.66
   2 !   14.5   6.8     2e-06     0.018     211     449 ..     124     338 ..      94     357 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 8.6e-05
  Amidohydro_3  6 kGrlvlPGFvDsHtHl 21
                  +G++vlPG++D+H Hl
    KIR65533.1 38 DGGFVLPGLTDAHCHL 53
                  69*************4 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2e-06
  Amidohydro_3 211 lldaaerlglplspgseeltigavklfad....gvlgsrtalltepyftgwpdfedealaelvaaadergldvaihaigdaavd.dvldafeaaaek 302
                   ++da++   ++    +++   g vkl +d    g+++  +a+ +++            +++ vaaa+++g ++a+h++ +a v+ +          +
    KIR65533.1 124 EVDAPQVAATVAA--QAAAGNGWVKLVGDwidrGTGDLAPAWDADT------------MTAAVAAAHAAGARAAVHTFSEAGVEiM---------VR 197
                   5666666666666..7888889999999999999999999999986............99************************22.........23 PP

  Amidohydro_3 303 ngnqdrrrlehaegvtesqiervaalqvaagvqpvfnf...edelldsrlg.perargs........tpvkellnagvkvalgsDapvgpfdpwpri 387
                    g+    ++eh++g++ + i+ +a+ + a  v ++ n+   + +  + r   p  a++         + v++  +agv++  g+D  +g +d+    
    KIR65533.1 198 AGVD---SVEHGTGLSLDLIDLMARQGTAL-VPTMINIrtfGGIAEQARAKfPGYADHMlalrdrfpEVVRSAYEAGVPIYVGTD-AGGGIDHGLAA 289
                   3444...89999999999888887755554.55577777775555555555555555557778887799****************.88889999888 PP

  Amidohydro_3 388 gaavmrktrrggevlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadp 449
                   + ++ +   +          ++  ++la+ + ++ + lg +     L +G  ADl+v+ +dp
    KIR65533.1 290 EEMLLLHSQA---------GMPAVDVLAAASWRAREWLGFPG----LVEGGLADLTVYPTDP 338
                   8888777744.........46788888888888888888888....8888888888888555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2752.57
//
Query:       KIR65534.1  [L=196]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-29  100.5   8.0    1.1e-28   99.5   8.0    1.5  1  TetR_C_35  Bacterial Tetracyclin repressor,  C-terminal domai
    3.5e-11   42.7   0.1    7.5e-11   41.6   0.1    1.6  1  TetR_N     Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.021   14.6   0.1      0.063   13.1   0.1    1.9  1  HTH_23     Homeodomain-like domain
      0.068   13.8   0.8      0.068   13.8   0.8    2.3  2  DUF883     Bacterial protein of unknown function (DUF883)
       0.15   12.2   0.9        1.8    8.7   0.0    2.9  3  HTH_28     Helix-turn-helix domain
        3.9    8.3  14.7       0.76   10.6   1.7    2.5  3  TetR_C_15  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_C_35  Bacterial Tetracyclin repressor,  C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   8.0   3.6e-32   1.1e-28       1     105 []      84     190 ..      84     190 .. 0.99

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 3.6e-32
   TetR_C_35   1 DlraairaavrafleeaaadpLvravltge..akedLlpllTtdseplleaAsarlaevlaeswpqldeadaevladavvRlalShvvlPpedpeetaa 97 
                 Dlraa +aa++++l++aa++pL++a+lt++  ++++Llp+lTt++e +l++++a+l e++a + p++d+a+++++ad+vvRl++Sh+vlP+++ e+ta+
  KIR65534.1  84 DLRAAAYAAIAHTLAAAADNPLIKAILTSArgGSDELLPYLTTRAELVLTESTAVLLEWAAGHLPAADPAALAFAADTVVRLVVSHIVLPRSPVEQTAD 182
                 99****************************9999***************************************************************** PP

   TetR_C_35  98 dlaevlap 105
                 +la+++++
  KIR65534.1 183 ALATLATR 190
                 *****987 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.1   2.5e-14   7.5e-11       1      47 []      16      62 ..      16      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 2.5e-14
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                I+daAr   +  G+d++ +  +A++AGvs+ ++Y  F++K++L+eal
  KIR65534.1 16 IVDAARTQTIAGGWDGVRMGGVAAAAGVSRQTVYNEFGTKAGLAEAL 62
                89******************************************996 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.1e-05     0.063       3      37 ..       9      51 ..       6      62 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.1e-05
      HTH_23  3 sereRlrillllae........GlsvreIAreLgvsrrTvyrw 37
                + r R +i+ +++         G +   +A++ gvsr+Tvy+ 
  KIR65534.1  9 RQRLRDSIVDAARTqtiaggwdGVRMGGVAAAAGVSRQTVYNE 51
                5566666899999445566666999999*************85 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.5      0.49   1.5e+03      31      40 ..       7      16 ..       1      44 [. 0.51
   2 ?   13.8   0.8   2.3e-05     0.068      25      74 ..      56     105 ..      44     113 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.49
      DUF883 31 elRerleerl 40
                ++R+rl++++
  KIR65534.1  7 AARQRLRDSI 16
                3333333322 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.3e-05
      DUF883  25 ageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVrenPw 74 
                 ag   + +R++++  ++++r+rl+++ +++++ a +a++++  ++ +nP+
  KIR65534.1  56 AGLAEALARREVDRFVTDVRARLDEHGDDLRAAAYAAIAHTLAAAADNPL 105
                 555556689****************************************7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00061       1.8      11      30 ..      30      49 ..      23      51 .. 0.85
   2 ?   -1.8   0.0       1.2   3.7e+03      29      43 ..      71      84 ..      68      95 .. 0.71
   3 ?    0.2   0.1      0.28   8.3e+02       5      19 ..     138     154 ..     136     160 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00061
      HTH_28 11 aGhsvreaArelgisrrtvy 30
                +G++   +A++ g+sr+tvy
  KIR65534.1 30 DGVRMGGVAAAAGVSRQTVY 49
                56777779************ PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
      HTH_28 29 vyrWikryeegGiag 43
                v + + r++e+G+ +
  KIR65534.1 71 VTDVRARLDEHGD-D 84
                5666778888884.3 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.28
      HTH_28   5 iikllaaGh.svre.aA 19 
                 +++++aaGh ++++ aA
  KIR65534.1 138 VLLEWAAGHlPAADpAA 154
                 7899*****96655466 PP

>> TetR_C_15  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1         6   1.8e+04      92     102 ..       8      18 ..       4      21 .. 0.56
   2 ?   10.6   1.7   0.00025      0.76      30      88 ..      52     111 ..      43     126 .. 0.83
   3 ?   10.1   7.4   0.00036       1.1       1      96 [.      84     184 ..      84     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 6
   TetR_C_15  92 drealiaelkr 102
                  r++l++ +++
  KIR65534.1   8 ARQRLRDSIVD 18 
                 45566655555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00025
   TetR_C_15  30 eapslgel.elvealeqriaealaalLarrrpelppedlelaafvaveaveallhlalee 88 
                   +  g++ +l+++  +r+++ ++a L+++ ++l+++  + +a+++ +a+++ l  a++ 
  KIR65534.1  52 FGTKAGLAeALARREVDRFVTDVRARLDEHGDDLRAAAYAAIAHTLAAAADNPLIKAILT 111
                 45667778788899999*********************************9987666655 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00036
   TetR_C_15   1 pLeealdalvdallaahrenpalrrvlleeapslgel..elvealeqriaealaalLarrrpelppedlelaafvaveaveallhlale.edp..adre 94 
                 +L++a+ a +   laa ++np ++++l++ +  ++el   l++++e  ++e +a lL+ ++ +lp++d++ +af a ++v  ++  +++ ++p  ++++
  KIR65534.1  84 DLRAAAYAAIAHTLAAAADNPLIKAILTSARGGSDELlpYLTTRAELVLTESTAVLLEWAAGHLPAADPAALAFAADTVVRLVVSHIVLpRSPveQTAD 182
                 79*****************************88888776677777878888888888888889999999999998888888766544440444644444 PP

   TetR_C_15  95 al 96 
                 al
  KIR65534.1 183 AL 184
                 44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1393.38
//
Query:       KIR65535.1  [L=468]
Description: prolyl-tRNA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-14   53.4   0.0    4.5e-14   52.4   0.0    1.6  1  HGTP_anticodon  Anticodon binding domain
    2.3e-11   44.0   0.0    3.5e-11   43.4   0.0    1.2  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P


Domain annotation for each model (and alignments):
>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0     5e-18   4.5e-14       1      92 [.     288     379 ..     288     381 .. 0.94

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 5e-18
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEES.SSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHHH CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraagirveldd.snesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelveklk 92 
                     q++v+ +++++  + e a kl+++Lr+ag+rv ldd  +  +g++  +a+l g+p++v+vG+++l  g   v +r+++++   +++++v+++ 
      KIR65535.1 288 QAYVMIVKDGEG-VGEAAAKLRDALRDAGVRVALDDrTDTAFGRRAVDAELRGYPVRVEVGPRDLAAGNAVVVRRTDGSKSPTPVADVVGAVL 379
                     789999999655.99*********************99999********************************************99999875 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   3.9e-15   3.5e-11      11     173 ..     104     266 ..      98     272 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 3.9e-15
                   EEE-SSSHHHHHHHHHHHEEEBGG.SSEEEEEEEEEEBTTTSTBCTTTB-SEEEEEEEEEEES.GGGHHHHHHHHHHHHHHHHHHTT.SC...EEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxx RF
  tRNA-synt_2b  11 yiLkPtneetfvelirdevlrskr.LPlklyqiqtkyRdEksdsrGLlRvreFhqkdgyvfha.easlddslrdlikaisriferlglef...raii 102
                    +++Pt+e+ + e + ++ + s+r LPl l q   + R E +  r  lR  eF +++g+  ha  ++++   r+++    + +e+l +++    +++
    KIR65535.1 104 VVVRPTSETVIGEFMAKW-IDSYRdLPLLLNQWANVVRWELR-PRIFLRTSEFLWQEGHTAHAtREDARAYARKILH---EAYEDLMVNVlgiPVVV 195
                   689*************98.999666*****************.9*9*****************66666666665554...44555543332222444 PP

                   EE..GTTSCBTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEEEEEEHHHHHH CS
                   xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 103 el..msaksadykdkkefeavsesltkgieigtiqklgtrlserlgatvldennreksvimicaaigveRlls 173
                   +l   ++  a +  ++  e ++   +k++++gt ++lg+++++++++++   ++ +++  ++  + + +R+l+
    KIR65535.1 196 GLktARERFAGATATYTCEGMMG-DGKALQLGTSHELGQNFAKAFDISYSSAEGGREHAWTTSWGTS-TRMLG 266
                   44333333355556666666666.78****************************9999988888887.78775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3598.20
//
Query:       KIR65536.1  [L=996]
Description: hypothetical protein TK50_09090 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-55  183.2  72.0    5.5e-14   52.2   3.0    7.2  8  TPR_12    Tetratricopeptide repeat
    1.3e-46  155.3  49.5    7.4e-07   28.9   0.4   10.8 10  TPR_10    Tetratricopeptide repeat
    0.00052   20.6   0.0      0.003   18.2   0.0    2.3  3  TIR_2     TIR domain
    0.00053   19.3   0.0    0.00092   18.5   0.0    1.4  1  NB-ARC    NB-ARC domain
     0.0026   18.0   0.8         31    5.3   0.0    5.2  5  TPR_17    Tetratricopeptide repeat
     0.0059   16.4   2.8        5.1    7.1   0.0    5.0  5  TPR_1     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.052   13.9   0.1      0.052   13.9   0.1    4.1  3  AAA_16    AAA ATPase domain
        0.8    9.9  29.0          3    8.1   0.0    7.7  8  TPR_7     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.5     5e-07    0.0011       7      69 ..     561     624 ..     556     632 .. 0.90
   2 !   29.5   2.2   2.9e-10   6.5e-07       6      64 ..     603     661 ..     598     661 .. 0.93
   3 !   52.2   3.0   2.5e-17   5.5e-14       4      76 ..     643     715 ..     640     716 .. 0.95
   4 !   30.8   0.2   1.2e-10   2.6e-07       5      74 ..     729     798 ..     725     801 .. 0.91
   5 !   30.0   3.5   2.1e-10   4.8e-07       8      72 ..     774     838 ..     773     843 .. 0.96
   6 !   37.7   2.8   8.1e-13   1.8e-09       2      73 ..     810     881 ..     809     885 .. 0.94
   7 !   40.9   4.3   8.6e-14   1.9e-10       2      76 ..     852     926 ..     851     927 .. 0.97
   8 !   42.7   5.4   2.3e-14   5.2e-11       2      76 ..     895     968 ..     894     969 .. 0.97

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5e-07
      TPR_12   7 n.nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69 
                 + nl   l+ +g+y+ +++l  +a+ ++ ++ +  hp++++   +L+ ++r +g+y++A++l e
  KIR65536.1 561 ViNLCRYLFSRGEYTACQRLGSRARVAWVEVIERSHPDVVALSVTLANALRSRGEYRAARALDE 624
                 3399999****************************************************99865 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 2.9e-10
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeA 64 
                  + la++lr +g+y  A++l e+ l +ar+ lG+ hp+t+ + ++L+  +r+lg+++ A
  KIR65536.1 603 SVTLANALRSRGEYRAARALDEANLTRARAELGEGHPETLGAANGLAASLRRLGDWRTA 661
                 447****************************************************9877 PP

  == domain 3  score: 52.2 bits;  conditional E-value: 2.5e-17
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                  a+n laa lrrlg++  A el ++a+ +a r+lGpdhp ++ t +nL+  +r++g++ +Alel +eal++++
  KIR65536.1 643 GAANGLAASLRRLGDWRTAYELDRQAHGQALRALGPDHPRALLTAHNLAVSHRMMGEFPQALELDQEALRRYR 715
                 57779******************************************************************98 PP

  == domain 4  score: 30.8 bits;  conditional E-value: 1.2e-10
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 ++nn+a  lr+ g+y+ A e+ e +++++   +Gpdhp+ ++++ nL+ + r++g+y +A +l   +la+
  KIR65536.1 729 SANNVARDLRECGEYARAWEMQEGVYQRYGVFFGPDHPDSLRAMKNLAVTRRKAGQYLDAYRLASSCLAR 798
                 4569*****************************************************9998877777765 PP

  == domain 5  score: 30.0 bits;  conditional E-value: 2.1e-10
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 nla++ r++g+y +A +l   +l+++r  +Gpd+++t+++  nL+  +r lg+   A+++ eea+
  KIR65536.1 774 NLAVTRRKAGQYLDAYRLASSCLARHRHRFGPDYAETLAAATNLANDLRCLGEVPGARARAEEAV 838
                 8**************************************************************97 PP

  == domain 6  score: 37.7 bits;  conditional E-value: 8.1e-13
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 +++a++nla+ lr lg+   A++  e+a+ + r++ G++hp+t+ +  +L++++r++g++eeA++l e++ a
  KIR65536.1 810 TLAAATNLANDLRCLGEVPGARARAEEAVHRLRATAGDEHPYTLCAAVDLAICLRLAGEPEEARRLDERTRA 881
                 556677************************************************************999876 PP

  == domain 7  score: 40.9 bits;  conditional E-value: 8.6e-14
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +++a++ la +lr +g+ +eA++l e+ ++   ++l pdhp+t+++  nL+  +ralg+ ++A++l ee l++++
  KIR65536.1 852 TLCAAVDLAICLRLAGEPEEARRLDERTRAGLAEVLAPDHPYTLACATNLASDLRALGEVRAARRLGEELLERLR 926
                 789999******************************************************************987 PP

  == domain 8  score: 42.7 bits;  conditional E-value: 2.3e-14
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +a+a  nla+ lr+lg+   A++l e+ le+ rr+ G +hp+t+++  nL++  ra +++e A+ell+e++a +e
  KIR65536.1 895 LACAT-NLASDLRALGEVRAARRLGEELLERLRRVRGATHPYTLACASNLADDRRADDDHEGARELLRETMAGYE 968
                 68889.******************************************************************998 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.043        95      10      42 .]     566     598 ..     562     598 .. 0.92
   2 !   24.5   1.7   7.7e-09   1.7e-05       8      42 .]     606     640 ..     604     640 .. 0.97
   3 !   12.7   0.9   3.8e-05     0.086       1      41 [.     641     681 ..     641     682 .. 0.98
   4 !   23.4   0.2   1.8e-08   3.9e-05       4      37 ..     686     719 ..     684     724 .. 0.92
   5 !   18.0   0.0   8.7e-07    0.0019       1      42 []     726     767 ..     726     767 .. 0.97
   6 !    5.9   0.1    0.0055        12       2      39 ..     769     806 ..     768     806 .. 0.95
   7 !   25.9   1.4   2.8e-09   6.2e-06       1      41 [.     810     850 ..     810     851 .. 0.98
   8 !   13.6   0.4   2.1e-05     0.047       7      41 ..     858     892 ..     855     893 .. 0.93
   9 !   27.2   1.4   1.1e-09   2.4e-06       1      41 [.     894     934 ..     894     935 .. 0.98
  10 !   28.9   0.4   3.3e-10   7.4e-07       1      42 []     936     977 ..     936     977 .. 0.98

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.043
      TPR_10  10 nalrqrgrydeAealleealairrrllGpdHPd 42 
                 ++l++rg+y++  +l  +a  ++ ++ ++ HPd
  KIR65536.1 566 RYLFSRGEYTACQRLGSRARVAWVEVIERSHPD 598
                 789*****************************8 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 7.7e-09
      TPR_10   8 LanalrqrgrydeAealleealairrrllGpdHPd 42 
                 Lanalr+rg+y +A+al e  l + r+ lG+ HP+
  KIR65536.1 606 LANALRSRGEYRAARALDEANLTRARAELGEGHPE 640
                 9*********************************7 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 3.8e-05
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 t+ + n La+ lr++g++  A +l ++a     r+lGpdHP
  KIR65536.1 641 TLGAANGLAASLRRLGDWRTAYELDRQAHGQALRALGPDHP 681
                 799*************************************9 PP

  == domain 4  score: 23.4 bits;  conditional E-value: 1.8e-08
      TPR_10   4 slnNLanalrqrgrydeAealleealairrrllG 37 
                 + +NLa+ +r +g++ +A++l +eal+++r  +G
  KIR65536.1 686 TAHNLAVSHRMMGEFPQALELDQEALRRYRIRFG 719
                 89****************************9888 PP

  == domain 5  score: 18.0 bits;  conditional E-value: 8.7e-07
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+ s nN a+ lr+ g+y++A +++e +++++   +GpdHPd
  KIR65536.1 726 TLFSANNVARDLRECGEYARAWEMQEGVYQRYGVFFGPDHPD 767
                 67899************************************9 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.0055
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrrllGpd 39 
                 ++++ NLa++ r+ g+y +A +l+  +la++r  +Gpd
  KIR65536.1 769 LRAMKNLAVTRRKAGQYLDAYRLASSCLARHRHRFGPD 806
                 67899*******************************98 PP

  == domain 7  score: 25.9 bits;  conditional E-value: 2.8e-09
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 t+++ +NLan lr +g+  +A+a +eea+ + r++ G++HP
  KIR65536.1 810 TLAAATNLANDLRCLGEVPGARARAEEAVHRLRATAGDEHP 850
                 899************************************** PP

  == domain 8  score: 13.6 bits;  conditional E-value: 2.1e-05
      TPR_10   7 NLanalrqrgrydeAealleealairrrllGpdHP 41 
                 +La+ lr  g+ +eA++l e++ a   ++l pdHP
  KIR65536.1 858 DLAICLRLAGEPEEARRLDERTRAGLAEVLAPDHP 892
                 68999999*************************** PP

  == domain 9  score: 27.2 bits;  conditional E-value: 1.1e-09
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 t+++ +NLa  lr++g+  +A++l ee l++ rr+ G+ HP
  KIR65536.1 894 TLACATNLASDLRALGEVRAARRLGEELLERLRRVRGATHP 934
                 89**************************************9 PP

  == domain 10  score: 28.9 bits;  conditional E-value: 3.3e-10
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+++ +NLa   r+  ++++A++ll+e++a ++r+lG  HP+
  KIR65536.1 936 TLACASNLADDRRADDDHEGARELLRETMAGYERTLGVGHPE 977
                 89***************************************7 PP

>> TIR_2  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.3e-06     0.003       1      96 [.      14     111 ..      14     135 .. 0.77
   2 ?   -3.1   0.0       5.1   1.2e+04      14      26 ..     604     617 ..     558     631 .. 0.56
   3 ?   -2.9   0.0       4.6     1e+04      13      59 ..     898     941 ..     896     961 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.3e-06
       TIR_2   1 VFiSyssedkewaeklaeaLeaagirvwldrwdlkpgedweeeieeaiessdvvlvvlspaylesew.creeleaale.aaeegkkrlipvllepekp 96 
                 + + + ++d+ wae+l e+Le+ g +++  r + ++ +d  + +++a  + + +l+vls+a l+        +  a++ +++e++  + pv + +  p
  KIR65536.1  14 IVVAHVGTDRLWAEWLGEQLERGGADAVARRIEPRATDDPAALLRDAAGDDAGLLLVLSDALLRGGAgPAPGWAEAVTaLRAERGDAFRPVSVGSRRP 111
                 6789999*******************9999999999*************************9976442333566666534444455588888883234 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.1
       TIR_2  14 eklaeaLeaag.ir 26 
                   la+aL+++g +r
  KIR65536.1 604 VTLANALRSRGeYR 617
                 33455555554444 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.6
       TIR_2  13 aeklaeaLeaagirvwldrwdlkpgedweeeieeaiessd..vvlvvls 59 
                 a++la++L+a g +v   r   + ge++ e++ + ++ ++  ++l++ s
  KIR65536.1 898 ATNLASDLRALG-EVRAAR---RLGEELLERL-RRVRGAThpYTLACAS 941
                 678888898888.554344...4588888888.5566653235555555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.1e-07   0.00092       2     212 ..     176     370 ..     175     398 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.1e-07
                 HHHHHHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEEEEESXXHHHHHHHXXHHHHHCCCTTSSSS-STTSHHHHHHHHC CS
      NB-ARC   2 eksvekviekLlekdelqslvvalvGmgGvGKttlakqilnksdevegrFdsvawvvvsktdkseeiletilkeLslseddleekeeveslkrklvrlL 100
                 e+ + ++ ++L  ++    +  a+ G +GvGKt l+ +          ++d + +v   +  + +  l  +++ L+l+ +d+   +      + l+r  
  KIR65536.1 176 EEPLTELRDRLT-EGVTSVVPTAVLGTAGVGKTQLVIEYAYR---FAACYDLIWYVRSEQLATVRADLAGLAASLGLRISDDLGVTADT-VLDALRRGE 269
                 666778888888.44444456799**********98887666...789***9888888888888888888********99998888766.888888888 PP

                 CCTTEEEEEEEE-SHHHH.....HHHHCHTTSEEEEEESBCCCCCCS-S-EEEEEESS--HHHHHHHHHHCCTS-GGCHH..CHHHHHHHHHHCTT-HH CS
      NB-ARC 101 ltkrfllvlDDVweeedwdkigvvlparenrlrvllTTRdeevanavsatsekievelLekdeawellenkvfekkleekesleevakeivekckGlPl 199
                   +  ll++D   + +++ ++  +  a   r++vl+T+Rde   ++     +++e+ + +  e+ e+l   + + +       e  a e++ + + lPl
  KIR65536.1 270 PVRDWLLIFDNAPTPQELTRLLPTGRAPRGRCHVLVTSRDEGWRSS----ADVLELDVYRRAESVEFLRRRAPRLT-------EPDAVELADRFGDLPL 357
                 8889**************999999999**************98332....36799999999999999887654332.......2335666667777777 PP

                 HHHHHHHHHC-TC CS
      NB-ARC 200 alkvlggllstkk 212
                 al + +g lst +
  KIR65536.1 358 ALDATAGYLSTSH 370
                 7777777777665 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.044        98      10      33 ..     597     620 ..     590     621 .. 0.77
   2 ?    0.3   0.0      0.51   1.1e+03      15      32 ..     644     661 ..     639     663 .. 0.90
   3 ?   -1.0   0.0       1.4     3e+03      16      33 ..     687     704 ..     682     705 .. 0.84
   4 ?    5.3   0.0     0.014        31       9      32 ..     765     788 ..     764     790 .. 0.91
   5 ?    1.0   0.0      0.31   6.9e+02      18      33 ..     858     873 ..     855     874 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.044
      TPR_17  10 PnnadaynnLAelllknGdlmtAr 33 
                 P+ + +   LA++l+++G+++ Ar
  KIR65536.1 597 PDVVALSVTLANALRSRGEYRAAR 620
                 555555568*************98 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.51
      TPR_17  15 aynnLAelllknGdlmtA 32 
                 a n LA  l+++Gd++tA
  KIR65536.1 644 AANGLAASLRRLGDWRTA 661
                 56889***********99 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.4
      TPR_17  16 ynnLAelllknGdlmtAr 33 
                  +nLA+ +++ G++ +A+
  KIR65536.1 687 AHNLAVSHRMMGEFPQAL 704
                 589999999999988886 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.014
      TPR_17   9 dPnnadaynnLAelllknGdlmtA 32 
                 +P++  a+ nLA++ +k+G++ +A
  KIR65536.1 765 HPDSLRAMKNLAVTRRKAGQYLDA 788
                 6999999*************9877 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.31
      TPR_17  18 nLAelllknGdlmtAr 33 
                  LA +l+ +G++++Ar
  KIR65536.1 858 DLAICLRLAGEPEEAR 873
                 79*************8 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.12   2.7e+02       7      20 ..     606     619 ..     604     622 .. 0.90
   2 ?   -0.6   0.0      0.62   1.4e+03       5      22 ..     646     663 ..     644     664 .. 0.87
   3 !    7.1   0.0    0.0023       5.1       6      28 ..     689     711 ..     687     715 .. 0.85
   4 ?    1.5   0.1      0.14     3e+02       2      21 ..     770     789 ..     769     799 .. 0.86
   5 ?    0.4   0.0       0.3   6.8e+02       7      20 ..     859     872 ..     857     874 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.12
                 HHHHHHHTT-HHHH CS
       TPR_1   7 lGnayfklgkydeA 20 
                 l+na+++ g+y  A
  KIR65536.1 606 LANALRSRGEYRAA 619
                 89*********999 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.62
                 HHHHHHHHHTT-HHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAle 22 
                 ++l++ +++lg++  A e
  KIR65536.1 646 NGLAASLRRLGDWRTAYE 663
                 789*********999876 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0023
                 HHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekAL 28 
                 nl++ ++ +g++ +Ale  ++AL
  KIR65536.1 689 NLAVSHRMMGEFPQALELDQEAL 711
                 9***************9755555 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHTT-HHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAl 21 
                 +a +nl+++ +k g+y +A 
  KIR65536.1 770 RAMKNLAVTRRKAGQYLDAY 789
                 5789************8885 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.3
                 HHHHHHHTT-HHHH CS
       TPR_1   7 lGnayfklgkydeA 20 
                 l+ +++  g+++eA
  KIR65536.1 859 LAICLRLAGEPEEA 872
                 899**********9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.3e-05     0.052       2      46 ..     172     215 ..     171     306 .. 0.79
   2 ?   -1.6   3.3       1.3     3e+03      70     123 ..     489     540 ..     410     655 .. 0.70
   3 ?   -2.4   0.8       2.5   5.5e+03      96     107 ..     878     897 ..     794     939 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-05
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellr 46 
                 + GRee l +L++ l    ++    + + G +GvGK+ lv e + 
  KIR65536.1 172 FTGREEPLTELRDRLTEGVTSV-VPTAVLGTAGVGKTQLVIEYAY 215
                 89*********99998777665.7888************955553 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.3
      AAA_16  70 salaqalareellrqlldeaesaeleawrekleealaavpelagaeasrllell 123
                 ++l +++ + ++lr+ l+eae +  ++++++l++a+ ++ ++  a++ r ++ll
  KIR65536.1 489 VQLHRVF-Q-QFLREQLTEAERRMYARAARRLLAAADPGEPDQIAHRPRYADLL 540
                 3344444.3.44555555555555555555555555544444444444444444 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.5
      AAA_16  96 awrekleeala............a 107
                 + r+ l    a            +
  KIR65536.1 878 RTRAGL----AevlapdhpytlaC 897
                 222222....12223444444442 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.6    0.0048        11       4      31 ..     605     630 ..     601     636 .. 0.85
   2 ?    7.6   0.2    0.0018       4.1       4      24 ..     647     667 ..     644     679 .. 0.84
   3 ?    8.1   0.0    0.0013         3       3      29 ..     688     712 ..     686     721 .. 0.90
   4 ?   -1.4   0.1       1.4   3.2e+03       3      18 ..     731     746 ..     729     748 .. 0.86
   5 ?    1.0   0.1      0.25   5.6e+02       2      18 ..     772     788 ..     771     800 .. 0.85
   6 ?   -1.4   0.0       1.4   3.1e+03       5      24 ..     859     878 ..     857     886 .. 0.86
   7 ?   -0.4   0.3      0.67   1.5e+03       3      27 ..     899     924 ..     896     930 .. 0.79
   8 ?    1.8   0.2      0.14     3e+02       3      28 ..     941     964 ..     938     973 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0048
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkd 31 
                  La++ +++G+y+ A  l e+   lt++
  KIR65536.1 605 TLANALRSRGEYRAARALDEA--NLTRA 630
                 69***************9999..77765 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0018
       TPR_7   4 nLarlysrlGdyeeAielyeq 24 
                  La   +rlGd+++A el +q
  KIR65536.1 647 GLAASLRRLGDWRTAYELDRQ 667
                 689999************999 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0013
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLalt 29 
                 +nLa+ ++ +G++ +A+el ++  al+
  KIR65536.1 688 HNLAVSHRMMGEFPQALELDQE--ALR 712
                 8********************9..555 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 1.4
       TPR_7   3 lnLarlysrlGdyeeA 18 
                 +n ar  +++G+y++A
  KIR65536.1 731 NNVARDLRECGEYARA 746
                 67788899*****998 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.25
       TPR_7   2 LlnLarlysrlGdyeeA 18 
                   nLa+++++ G+y +A
  KIR65536.1 772 MKNLAVTRRKAGQYLDA 788
                 579*********99555 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 1.4
       TPR_7   5 LarlysrlGdyeeAielyeq 24 
                 La + +  G+ eeA +l e+
  KIR65536.1 859 LAICLRLAGEPEEARRLDER 878
                 77888889******999887 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 0.67
       TPR_7   3 lnLarlysrlGdyeeAielyeqsL.a 27 
                  nLa+  ++lG+ + A +l e++L +
  KIR65536.1 899 TNLASDLRALGEVRAARRLGEELLeR 924
                 699999******99999887776655 PP

  == domain 8  score: 1.8 bits;  conditional E-value: 0.14
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLal 28 
                 +nLa+ ++++ d+e A el+++   +
  KIR65536.1 941 SNLADDRRADDDHEGARELLRE--TM 964
                 89*****************999..44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (996 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.51
# Mc/sec: 5878.52
//
Query:       KIR65537.1  [L=78]
Description: hypothetical protein TK50_09100 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 532.15
//
Query:       KIR65538.1  [L=1129]
Description: hypothetical protein TK50_09105 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-09   37.5   7.6    1.2e-05   25.5   0.3    7.7  8  TPR_12    Tetratricopeptide repeat
    6.8e-07   29.0  39.4       0.04   13.8   0.7    8.2  7  TPR_10    Tetratricopeptide repeat
     0.0033   17.5   0.3        4.3    7.8   0.0    4.7  5  TPR_8     Tetratricopeptide repeat
     0.0098   16.4  44.1        4.8    7.8   1.4   11.1 11  TPR_19    Tetratricopeptide repeat
  ------ inclusion threshold ------
        1.7    8.4   5.2         57    3.5   0.2    4.8  6  TPR_11    TPR repeat
        8.1    6.8  23.7        1.3    9.3   0.4    6.7  8  TPR_2     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.31   9.3e+02       8      38 ..     607     638 ..     599     658 .. 0.72
   2 ?    1.1   1.1      0.17     5e+02      43      69 ..     694     720 ..     687     742 .. 0.83
   3 !    5.4   0.7    0.0074        22      26      58 ..     793     823 ..     792     827 .. 0.89
   4 ?    1.8   0.9       0.1   3.1e+02      14      56 ..     825     866 ..     821     873 .. 0.78
   5 ?   -0.4   0.1      0.47   1.4e+03      16      29 ..     920     933 ..     879     935 .. 0.71
   6 !    5.6   0.0    0.0064        19      16      58 ..     920     958 ..     915     964 .. 0.85
   7 !   25.5   0.3     4e-09   1.2e-05       8      75 ..     995    1062 ..     989    1064 .. 0.93
   8 !   24.5   2.0   8.1e-09   2.4e-05      10      73 ..    1039    1102 ..    1036    1105 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.31
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrl.lG 38 
                 +la +lr++ r++ A + l +a  i +++  G
  KIR65538.1 607 ELARALRARFRLTGASADLLEAASILEQVvRG 638
                 57778888888888888888888887555354 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.17
      TPR_12  43 ltattlrnLgrlyralgryeeAlelle 69 
                 ++a++l   ++ + a+ +++eA++l+ 
  KIR65538.1 694 GLARALVVRADRLGAAADLDEAVQLYL 720
                 578888888888888888888888885 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0074
      TPR_12  26 lekaleiarrllGpdhpltattlrnLgrlyral 58 
                 l++a +++ ++ G d    a++lr+L++++++l
  KIR65538.1 793 LHRAAQLYAEAAGRDG--DARVLRGLAETHSEL 823
                 689*****99978776..***********9875 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.1
      TPR_12  14 rrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyr 56 
                 ++ g+ +e  + l +a+ ++ ++ G d +++a++l +L r++r
  KIR65538.1 825 AATGDPAELDAALAAARSAVAASDG-DDLAYAECLATLTRVLR 866
                 5678888888888888888877755.678*********99985 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.47
      TPR_12  16 lgrydeAlelleka 29 
                 +g+ +eA++ +e+a
  KIR65538.1 920 AGDIQEACARFEEA 933
                 45566666666655 PP

  == domain 6  score: 5.6 bits;  conditional E-value: 0.0064
      TPR_12  16 lgrydeAlellekaleiarrllGpdhpltattlrnLgrlyral 58 
                 +g+ +eA++ +e+a+++      p+ p++a  l +L++++ra+
  KIR65538.1 920 AGDIQEACARFEEAVRVS----PPTGPGLAGLLTDLSDALRAR 958
                 799***********8888....4999*************9854 PP

  == domain 7  score: 25.5 bits;  conditional E-value: 4e-09
      TPR_12    8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75  
                   la+vl +l + + A +++++a+e++ r +Gpd + t++++ + g ++  ++r+ eA++ l+ +++++
  KIR65538.1  995 LLAEVLVALRERAAAVACYRRAVELYGRRHGPDGDRTVEVRAAFGGALIDADRFTEARDELRAVVDVL 1062
                  69*********************************************************999887765 PP

  == domain 8  score: 24.5 bits;  conditional E-value: 8.1e-09
      TPR_12   10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73  
                  + +l  + r++eA++ l++++++ ++ lGp+h  t++++++ +r++  lg+++ A++ l+e+la
  KIR65538.1 1039 GGALIDADRFTEARDELRAVVDVLTQRLGPEHRRTLAARHAAARALVGLGDLDGARRELREVLA 1102
                  66778899****************9999**********************************98 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.8   4.7e-05      0.14       8      36 ..     608     636 ..     607     636 .. 0.95
   2 ?    2.3   1.4     0.057   1.7e+02       8      37 ..     695     724 ..     690     728 .. 0.75
   3 ?    1.0   0.1      0.15   4.4e+02      14      31 ..     919     936 ..     916     937 .. 0.87
   4 ?    0.4   0.5      0.21   6.3e+02       2      28 ..     945     971 ..     944     980 .. 0.87
   5 !   11.8   1.0   5.7e-05      0.17       8      39 ..     996    1027 ..     995    1028 .. 0.96
   6 !    9.6   0.1   0.00029      0.86       9      41 ..    1039    1071 ..    1034    1072 .. 0.92
   7 !   13.8   0.7   1.3e-05      0.04       1      42 []    1073    1114 ..    1073    1114 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.7e-05
      TPR_10   8 LanalrqrgrydeAealleealairrrll 36 
                 La+alr+r+r+++A a+l ea +i ++++
  KIR65538.1 608 LARALRARFRLTGASADLLEAASILEQVV 636
                 9************************9986 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.057
      TPR_10   8 LanalrqrgrydeAealleealairrrllG 37 
                 La+al  r ++ +A a+l+ea++++ ++ G
  KIR65538.1 695 LARALVVRADRLGAAADLDEAVQLYLAAAG 724
                 777777777777788888899888877766 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.15
      TPR_10  14 qrgrydeAealleealai 31 
                 + g+ +eA a +eea+++
  KIR65538.1 919 DAGDIQEACARFEEAVRV 936
                 6799***********986 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.21
      TPR_10   2 AsslnNLanalrqrgrydeAealleea 28 
                 A  l++L+ alr+r ++ +++a+l+ a
  KIR65538.1 945 AGLLTDLSDALRARAERFGSRADLDAA 971
                 78899**************99998877 PP

  == domain 5  score: 11.8 bits;  conditional E-value: 5.7e-05
      TPR_10    8 LanalrqrgrydeAealleealairrrllGpd 39  
                  La +l +++++++A+a +++a++++ r +Gpd
  KIR65538.1  996 LAEVLVALRERAAAVACYRRAVELYGRRHGPD 1027
                  8999**************************98 PP

  == domain 6  score: 9.6 bits;  conditional E-value: 0.00029
      TPR_10    9 analrqrgrydeAealleealairrrllGpdHP 41  
                  + al +  r++eA++ l+ ++++  + lGp+H+
  KIR65538.1 1039 GGALIDADRFTEARDELRAVVDVLTQRLGPEHR 1071
                  67888999************************6 PP

  == domain 7  score: 13.8 bits;  conditional E-value: 1.3e-05
      TPR_10    1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42  
                  t+++++  a+al  +g++d+A++ l+e+la + r  G+d Pd
  KIR65538.1 1073 TLAARHAAARALVGLGDLDGARRELREVLAGQARGGGEDDPD 1114
                  89999*****************************99999998 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.5   7.4e+03      18      34 .]     586     602 ..     585     602 .. 0.87
   2 ?   -1.7   0.1       1.6   4.7e+03      15      27 ..     710     722 ..     696     724 .. 0.77
   3 ?    1.3   0.0      0.18   5.4e+02      14      32 ..     920     938 ..     918     940 .. 0.88
   4 !    7.8   0.0    0.0015       4.3       7      30 ..     996    1019 ..     995    1022 .. 0.91
   5 ?    1.7   0.0      0.13   3.9e+02       4      28 ..    1077    1101 ..    1074    1102 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHHHH. CS
       TPR_8  18 eeAkeyyekaleldpdn 34 
                 ++A+ ++++a+  dp++
  KIR65538.1 586 DAAIGSLRRATARDPAH 602
                 789999********986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.6
                 T-HHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyeka 27 
                  d++eA++ y  a
  KIR65538.1 710 ADLDEAVQLYLAA 722
                 5899***999887 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.18
                 TT-HHHHHHHHHHHHHHHH CS
       TPR_8  14 lgdyeeAkeyyekaleldp 32 
                  gd++eA + +e+a++ +p
  KIR65538.1 920 AGDIQEACARFEEAVRVSP 938
                 5999***********9998 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0015
                  HHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8    7 lgsiylklgdyeeAkeyyekalel 30  
                  l+ ++  l +  +A+++y++a+el
  KIR65538.1  996 LAEVLVALRERAAAVACYRRAVEL 1019
                  88999999**************98 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.13
                  HHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8    4 yynlgsiylklgdyeeAkeyyekal 28  
                   +  ++++  lgd++ A   ++++l
  KIR65538.1 1077 RHAAARALVGLGDLDGARRELREVL 1101
                  678899***********99999876 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.4     0.059   1.8e+02       7      41 ..     585     618 ..     584     623 .. 0.82
   2 !    5.5   0.0     0.008        24       6      37 ..     624     657 ..     621     658 .. 0.82
   3 ?    3.7   0.0     0.031        92       4      36 ..     665     700 ..     664     704 .. 0.80
   4 ?   -0.9   2.5      0.84   2.5e+03       4      36 ..     709     743 ..     706     745 .. 0.77
   5 ?    2.0   0.1       0.1     3e+02       8      36 ..     794     821 ..     789     823 .. 0.79
   6 ?   -0.7   1.1      0.68     2e+03       7      35 ..     833     858 ..     825     865 .. 0.68
   7 ?    3.0   0.0     0.048   1.4e+02      41      61 ..     882     900 ..     880     906 .. 0.81
   8 ?    2.7   0.0     0.062   1.8e+02       3      23 ..     919     939 ..     919     960 .. 0.80
   9 !    7.8   1.4    0.0016       4.8       6      53 ..     967    1018 ..     964    1027 .. 0.82
  10 ?    5.2   0.0      0.01        31      25      52 ..    1032    1059 ..    1013    1065 .. 0.82
  11 !    7.7   1.3    0.0017       5.2       1      52 [.    1042    1101 ..    1042    1106 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.059
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgql 41 
                 +++A+  l++a + dp +a++   LA+al a  +l
  KIR65538.1 585 LDAAIGSLRRATARDPAHADLPE-LARALRARFRL 618
                 689****************9998.89888776555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.008
      TPR_19   6 dyaeAlalleqalqe..dpknaearllLAealla 37 
                 d+ eA+++leq+     + +++e+ l+LAe+ la
  KIR65538.1 624 DLLEAASILEQVVRGgrEVGDPELVLDLAEVRLA 657
                 7889*******986633666**********9887 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.031
      TPR_19   4 egdyaeAlalleqalqe.dpk..naearllLAeall 36 
                 +gd+++A+ l++ + ++  p+   ++a+ +LA+al+
  KIR65538.1 665 AGDLTSAVGLFRGVVAAgGPGsgASRAAVGLARALV 700
                 79***********85554666447777779***996 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.84
      TPR_19   4 egdyaeAlalleqal..qedpknaearllLAeall 36 
                 + d++eA++l+ +a   +  ++ +++rl+ ++all
  KIR65538.1 709 AADLDEAVQLYLAAAgtATGADRDDLRLRAVDALL 743
                 56999999999887633446679999999999998 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.1
      TPR_19   8 aeAlalleqalqedpknaearllLAeall 36 
                  +A++l+++a +   ++a+++ +LAe + 
  KIR65538.1 794 HRAAQLYAEA-AGRDGDARVLRGLAETHS 821
                 5799999998.556669999999999875 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 0.68
      TPR_19   7 yaeAlalleqalqedpknaearllLAeal 35 
                 +++Ala+ ++a +++ +++ +++  Ae+l
  KIR65538.1 833 LDAALAAARSAVAASDGDD-LAY--AECL 858
                 6788888888877765544.333..4555 PP

  == domain 7  score: 3.0 bits;  conditional E-value: 0.048
      TPR_19  41 ldeAealLdalpeedpddary 61 
                 +d+A++lLda+p + pd  r 
  KIR65538.1 882 VDAARRLLDAVPGSHPD--RH 900
                 699*************9..33 PP

  == domain 8  score: 2.7 bits;  conditional E-value: 0.062
      TPR_19   3 aegdyaeAlalleqalqedpk 23 
                 ++gd +eA a++e+a   +p 
  KIR65538.1 919 DAGDIQEACARFEEAVRVSPP 939
                 58*************999885 PP

  == domain 9  score: 7.8 bits;  conditional E-value: 0.0016
      TPR_19    6 dyaeAlalleqalqe....dpknaearllLAeallalgqldeAealLdalpe 53  
                  d+++A  +l +a +     dp +a+   lLAe+l+al + ++A a+  ++ e
  KIR65538.1  967 DLDAARLALVRAVDVtpaaDPRSADRVRLLAEVLVALRERAAAVACYRRAVE 1018
                  88999888888885544448999999999***************99888766 PP

  == domain 10  score: 5.2 bits;  conditional E-value: 0.01
      TPR_19   25 aearllLAeallalgqldeAealLdalp 52  
                   e+r++   al+ + +++eA++ L a+ 
  KIR65538.1 1032 VEVRAAFGGALIDADRFTEARDELRAVV 1059
                  689999999***************9875 PP

  == domain 11  score: 7.7 bits;  conditional E-value: 0.0017
      TPR_19    1 llaegdyaeAlalleqalqe.....dpk...naearllLAeallalgqldeAealLdalp 52  
                  l+++ +++eA + l+++ +       p+    ++ar + A+al+ lg+ld A++ L +++
  KIR65538.1 1042 LIDADRFTEARDELRAVVDVltqrlGPEhrrTLAARHAAARALVGLGDLDGARRELREVL 1101
                  577888888888888877664444522244488888899****************99876 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.21   6.4e+02      10      29 ..     585     604 ..     584     605 .. 0.90
   2 ?   -0.6   0.2      0.38   1.1e+03       9      20 ..     711     722 ..     711     723 .. 0.89
   3 ?    0.9   0.0      0.12   3.7e+02       7      25 ..     920     938 ..     918     939 .. 0.92
   4 ?   -3.6   0.0       3.1   9.3e+03       9      26 ..     967     984 ..     967     985 .. 0.87
   5 ?    3.5   0.2     0.019        57      12      23 ..    1008    1019 ..     999    1019 .. 0.91
   6 ?   -0.9   0.0      0.44   1.3e+03       3      21 ..    1083    1101 ..    1081    1102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.21
      TPR_11  10 yeeAieaYkkAlkldPdnae 29 
                 +++Ai ++++A + dP  a+
  KIR65538.1 585 LDAAIGSLRRATARDPAHAD 604
                 699*************9887 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.38
      TPR_11   9 kyeeAieaYkkA 20 
                 +++eA++ Y +A
  KIR65538.1 711 DLDEAVQLYLAA 722
                 689******998 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.12
      TPR_11   7 qGkyeeAieaYkkAlkldP 25 
                  G++ eA +++++A++ +P
  KIR65538.1 920 AGDIQEACARFEEAVRVSP 938
                 699************9988 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 3.1
      TPR_11   9 kyeeAieaYkkAlkldPd 26 
                 ++++A  a+ +A++ +P 
  KIR65538.1 967 DLDAARLALVRAVDVTPA 984
                 5899999999***99995 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.019
      TPR_11   12 eAieaYkkAlkl 23  
                  +A+++Y++A++l
  KIR65538.1 1008 AAVACYRRAVEL 1019
                  7*********97 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 0.44
      TPR_11    3 ayyeqGkyeeAieaYkkAl 21  
                  a++ +G++++A  ++++ l
  KIR65538.1 1083 ALVGLGDLDGARRELREVL 1101
                  67779*******9999987 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.5   4.3e+03      18      34 .]     586     602 ..     585     602 .. 0.87
   2 ?   -1.9   0.3       1.6   4.9e+03       7      30 ..     608     631 ..     607     634 .. 0.88
   3 ?   -0.0   0.9      0.43   1.3e+03       2      27 ..     697     722 ..     696     723 .. 0.75
   4 ?    3.8   0.0     0.025        76      14      32 ..     920     938 ..     919     939 .. 0.91
   5 ?   -3.2   0.0       4.6   1.4e+04      13      32 ..     964     983 ..     953     984 .. 0.70
   6 ?    9.3   0.4   0.00043       1.3       6      31 ..     995    1020 ..     991    1022 .. 0.93
   7 ?   -0.9   0.0      0.81   2.4e+03      10      27 ..    1041    1058 ..    1038    1061 .. 0.83
   8 ?    4.8   0.4     0.012        37       5      29 ..    1078    1102 ..    1075    1102 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.5
       TPR_2  18 eeAleafekAleldPnn 34 
                 + A+  +++A + dP +
  KIR65538.1 586 DAAIGSLRRATARDPAH 602
                 789999********975 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.6
       TPR_2   7 lGlayyklgdyeeAleafekAlel 30 
                 l++a++++ ++  A +++ +A ++
  KIR65538.1 608 LARALRARFRLTGASADLLEAASI 631
                 8999*******99*9999999876 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.43
       TPR_2   2 ealynlGlayyklgdyeeAleafekA 27 
                 +al  +++ + ++ d++eA++++ +A
  KIR65538.1 697 RALVVRADRLGAAADLDEAVQLYLAA 722
                 56666777777788999999999887 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.025
       TPR_2  14 lgdyeeAleafekAleldP 32 
                 +gd +eA + fe+A++  P
  KIR65538.1 920 AGDIQEACARFEEAVRVSP 938
                 69*************9887 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 4.6
       TPR_2  13 klgdyeeAleafekAleldP 32 
                  + d++ A+ a+ +A+   P
  KIR65538.1 964 SRADLDAARLALVRAVDVTP 983
                 55688999999999987766 PP

  == domain 6  score: 9.3 bits;  conditional E-value: 0.00043
       TPR_2    6 nlGlayyklgdyeeAleafekAleld 31  
                   l++++ +l + + A++++++A+el+
  KIR65538.1  995 LLAEVLVALRERAAAVACYRRAVELY 1020
                  68999*******************97 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 0.81
       TPR_2   10 ayyklgdyeeAleafekA 27  
                  a++ ++++ eA++ ++++
  KIR65538.1 1041 ALIDADRFTEARDELRAV 1058
                  788999******999876 PP

  == domain 8  score: 4.8 bits;  conditional E-value: 0.012
       TPR_2    5 ynlGlayyklgdyeeAleafekAle 29  
                  ++ ++a+  lgd++ A++ ++++l+
  KIR65538.1 1078 HAAARALVGLGDLDGARRELREVLA 1102
                  67899****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 7111.58
//
Query:       KIR65539.1  [L=336]
Description: ATPase AAA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-08   34.3   0.0    5.6e-08   32.9   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
    2.6e-06   27.9   0.2    3.4e-05   24.3   0.2    2.5  1  AAA              ATPase family associated with various cellul
    0.00024   21.5   2.1     0.0028   18.1   0.5    2.6  2  AAA_16           AAA ATPase domain
    0.00026   21.3   0.1     0.0032   17.7   0.1    2.5  2  AAA_22           AAA domain
    0.00057   19.5   0.0     0.0012   18.4   0.0    1.5  1  AAA_25           AAA domain
     0.0021   18.2   0.0     0.0045   17.1   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
     0.0026   17.7   0.1      0.011   15.6   0.0    1.9  2  NACHT            NACHT domain
      0.004   17.7   0.0     0.0072   16.9   0.0    1.4  1  AAA_18           AAA domain
      0.005   16.8   0.0      0.012   15.5   0.0    1.6  1  NTPase_1         NTPase
     0.0085   15.8   0.0       0.33   10.6   0.0    2.2  2  Sigma54_activat  Sigma-54 interaction domain
     0.0086   16.4   0.0      0.043   14.2   0.0    2.0  2  RNA_helicase     RNA helicase
     0.0099   15.6   0.0       0.04   13.6   0.0    1.9  2  IstB_IS21        IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.078   12.7   0.0    1.8  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.022   14.5   0.0      0.048   13.4   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
      0.024   13.7   0.0      0.036   13.1   0.0    1.2  1  T2SSE            Type II/IV secretion system protein
      0.044   13.9   0.0      0.085   12.9   0.0    1.5  1  MMR_HSR1         50S ribosome-binding GTPase
      0.062   12.5   0.0      0.089   12.0   0.0    1.1  1  ArsA_ATPase      Anion-transporting ATPase
      0.076   12.2   0.0       0.12   11.5   0.0    1.2  1  TIP49            TIP49 P-loop domain
      0.087   13.0   0.0       0.14   12.3   0.0    1.4  1  AAA_33           AAA domain
       0.11   12.2   0.0       0.24   11.1   0.0    1.5  1  AAA_30           AAA domain
       0.13   12.3   0.0       0.48   10.5   0.0    1.9  1  AAA_14           AAA domain
       0.15   11.1   0.0       0.25   10.3   0.0    1.3  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
       0.17   11.3   0.0       0.25   10.7   0.0    1.2  1  ParA             NUBPL iron-transfer P-loop NTPase
       0.17   12.4   0.1       0.45   11.0   0.0    1.6  1  ABC_tran         ABC transporter
       0.19   12.1   0.1       0.68   10.3   0.1    1.8  1  AAA_19           AAA domain
       0.24   11.1   0.0       0.39   10.4   0.0    1.2  1  AAA_24           AAA domain
       0.25   11.1   0.0         11    5.8   0.0    2.2  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
       0.29   10.6   0.0       0.51    9.8   0.0    1.3  1  AAA_7            P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   8.7e-11   5.6e-08       2     137 ..      78     250 ..      77     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 8.7e-11
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.......................--------....................G CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreik..............ngttslvdsplvraar....................e 65 
                 +l+ G+pG+gKs+la  +a+ l   +v+    t++ t +d +++++                              +                     +
  KIR65539.1  78 LLITGKPGVGKSTLAYAVAHELaLGPVLRWPVTSRSTLADGLYSYDAIgrlqeaslhhqlgtT-------------GDlqigrylrlgplgtallpyeH 163
                 899*******************99999999999999999999999976654222222222220.............2255777777888888888**** PP

                 -SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---.........................-EEEEEESS--.-TT-TTHHHHTT CS
       AAA_5  66 geilvlDEveraesevlnsLlslleerrllleeggelvkaknddller...................frviatanpldrslnelspalrsR 137
                 +++l++DE+++ + +  n Ll+++ee +++++e+++    ++   l+                      v++t+n     + e spa+ +R
  KIR65539.1 164 PRVLLIDEIDKSDVDLPNDLLNIFEEGEYPIPELQRIAASQPRVELPVegsddlvgvhrgvvrcnafPLVLMTSNG----EREFSPAFHRR 250
                 **********************************999988885433336888898888888775553333444444....44778888888 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.2   5.4e-08   3.4e-05       1     120 [.      78     248 ..      78     256 .. 0.55

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 5.4e-08
                 EEEESSTTSSHHHHHHHHHHHH.........THE..............EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGG CS
         AAA   1 vllyGppGtGKTllakavakel.........gve..............fleisgsellskyvgesekkirelfkeakeka.......kpsilfiDEida 69 
                 +l++G pG+GK++la ava+el           +              + +++ ++l    +g + +   +   ++           +p +l+iDEid+
  KIR65539.1  78 LLITGKPGVGKSTLAYAVAHELalgpvlrwpV-TsrstladglysydaIGRLQEASLHH-QLGTTGDLQIGRYLRLGPLGtallpyeHPRVLLIDEIDK 174
                 589******************84433332220.12333333433333333444444442.33444443333333333333566788778*********8 PP

                 HHHHHTTCCCHHHHHHHHHHHHHHHHTTTS..................................SSTEEEEEEESSGGGSTHHHH CS
         AAA  70 laksrsgseseeeervvnqLlteldgvkkk..................................eskvivigatnrpdkldpall 120
                    +           + n Ll+ +++ +                                    ++  +v++++n +++++pa+ 
  KIR65539.1 175 SDVD-----------LPNDLLNIFEEGEYPipelqriaasqprvelpvegsddlvgvhrgvvrcNAFPLVLMTSNGEREFSPAFH 248
                 7333...........3666666666666666666666666666666666666666666666664443344444444666666665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.5   4.4e-06    0.0028       9     148 ..      65     176 ..      61     193 .. 0.59
   2 ?   -2.0   0.0       6.2     4e+03     106     125 ..     296     328 ..     245     333 .. 0.54

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4.4e-06
      AAA_16   9 leqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaa 107
                 le +++al  +r    + +l++G +GvGKs+l+ +++++l       +  + + +     +s+la+ l   + +  l ++   +++ +  ++ + +++ 
  KIR65539.1  65 LELINAALY-LR----RPLLITGKPGVGKSTLAYAVAHELALGP---VLRWPVTS-----RSTLADGLYSYDAIGRLQEA---SLHHQLGTTGDLQIG- 146
                 555555555.22....569**************88887665441...44444444.....34577777665555555555...333333333333333. PP

      AAA_16 108 vpelagaeasrllellkrll.allsrderplvlvlDdlqwad 148
                             +  l  l  all+  e+p vl++D++++ d
  KIR65539.1 147 -----------RYLRLGPLGtALLPY-EHPRVLLIDEIDKSD 176
                 ...........233333444344555.777777777777776 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 6.2
      AAA_16 106 a.............avpelagaeasrllellkr 125
                               ++p+  + +++rl++l+ r
  KIR65539.1 296 LatdqllnaiyltvQAPDGGPPDRERLADLVLR 328
                 022222223333444444455555666666655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1     5e-06    0.0032       6     112 ..      76     183 ..      73     195 .. 0.51
   2 ?   -0.6   0.0       2.3   1.5e+03      37      66 ..     299     332 ..     270     336 .] 0.61

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.......erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav....ie 93 
                 + l++tG +G+GK+tl+  ++++l   +  ++         ++++++++ +    ++l ++l    +l+  +      +l  + +            ++
  KIR65539.1  76 RPLLITGKPGVGKSTLAYAVAHELALGPVLRWpvtsrstLADGLYSYDAIGRLQEASLHHQLGTTGDLQIGR----YLRLGPLGTAL-----LpyehPR 165
                 6789*******************9644333334432222222222333333333333333333322222222....22222222222.....1355558 PP

      AAA_22  94 lliiDEaqhlrseealeeL 112
                 +l+iDE+++    ++ ++L
  KIR65539.1 166 VLLIDEIDKS-DVDLPNDL 183
                 9999999986.44444444 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.3
      AAA_22  37 e..erpevvfvtlpsst..sskdllrellralgl 66 
                 +   ++ +++v++p ++  +++ l+  +lr+l+ 
  KIR65539.1 299 DqlLNAIYLTVQAPDGGppDRERLADLVLRQLDA 332
                 2444555556666666666666666666666654 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.9e-06    0.0012      25      66 ..      67     108 ..      51     116 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.9e-06
      AAA_25  25 lvkgllpagelallaGapgtGKttlaldlalavatGkpwlgp 66 
                 l+   l +    l++G pg+GK+tla+ +a+++a+G  + +p
  KIR65539.1  67 LINAALYLRRPLLITGKPGVGKSTLAYAVAHELALGPVLRWP 108
                 5666666778899*********************98644434 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   7.1e-06    0.0045       7     107 ..      79     191 ..      76     196 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 7.1e-06
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTTT-HHHHTTS...................EEEEETGGG--- CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligappgyvgaeegG...................ivllDEidKihp 82 
                 l++g+ gvGk+ la a+a  l ++   +  +   s+l+      +++ +l +  ++ + g +g  + G                   ++l+DEidK   
  KIR65539.1  79 LITGKPGVGKSTLAYAVAHELALGPVLRWPVTSRSTLADglysYDAIGRLQEASLHHQLGTTGDLQIGrylrlgplgtallpyehprVLLIDEIDKSDV 177
                 678888999999999999998884444444444444444222233344444444444555555555557778889999999999999************ PP

                 ----------HHHHHHHHHHHH--E CS
       AAA_2  83 kessgadvSregVqrdLLqileggt 107
                            +  +dLL+i+e+g+
  KIR65539.1 178 -----------DLPNDLLNIFEEGE 191
                 ...........************96 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.8e-05     0.011       1      26 [.      76     101 ..      76     106 .. 0.91
   2 ?   -1.1   0.0       2.4   1.5e+03      79      99 ..     161     181 ..     135     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.8e-05
                 SCEEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   1 rlvilqGeaGsGKTtLlqklalawae 26 
                 r+++++G++G+GK+tL+  +a+++a 
  KIR65539.1  76 RPLLITGKPGVGKSTLAYAVAHELAL 101
                 6899******************9986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.4
                 SCCCEEEEEE-STT-SS-TCH CS
       NACHT  79 lperlLlilDglDelvtdlgq 99 
                  ++  +l++D +D+   dl++
  KIR65539.1 161 YEHPRVLLIDEIDKSDVDLPN 181
                 455567999***998877776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.1e-05    0.0072       2      25 ..      79     108 ..      78     139 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf......g 25 
                 l+tG+pGvGK+tla +++ +l++       
  KIR65539.1  79 LITGKPGVGKSTLAYAVAHELALgpvlrwP 108
                 79************9998887665555442 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.9e-05     0.012       2      23 ..      78      99 ..      77     104 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.9e-05
                EEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlell 23
                ++iTG+pGvGK+Tl   v+++l
  KIR65539.1 78 LLITGKPGVGKSTLAYAVAHEL 99
                58*************9999988 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00051      0.33      13      43 ..      66      96 ..      60     104 .. 0.84
   2 ?    2.7   0.0      0.14        92      96     122 ..     166     192 ..     159     205 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00051
                     HHHHHHCTSSS-EEEECSTTSSHHHHHHHHH CS
  Sigma54_activat 13 eqikkvaktdlsvlitGesGtGKellaraih 43
                     e i+++   + ++litG+ G+GK++la a+ 
       KIR65539.1 66 ELINAALYLRRPLLITGKPGVGKSTLAYAVA 96
                     667788888899***************8874 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.14
                      EEEEETGGGS-HHHHHHHHHHHHHSEE CS
  Sigma54_activat  96 tlfLDeigelplelQekLlrvlqegev 122
                      +l++Dei + +++l + Ll++ +ege+
       KIR65539.1 166 VLLIDEIDKSDVDLPNDLLNIFEEGEY 192
                      799*********************987 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.8e-05     0.043       2      23 ..      79     100 ..      78     125 .. 0.79
   2 ?   -0.7   0.0       2.8   1.8e+03      46      68 ..     160     181 ..     142     196 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.8e-05
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   +++G++g+GKStla+ +a++l+
    KIR65539.1  79 LITGKPGVGKSTLAYAVAHELA 100
                   799***************9998 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.8
  RNA_helicase  46 gYtgqevvvidDfgqvkdeenps 68 
                    Y+++ v++id++ ++  +  p+
    KIR65539.1 160 PYEHPRVLLIDEIDKSDVD-LPN 181
                   59999*******9998755.333 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   6.2e-05      0.04      49      71 ..      77      99 ..      63     131 .. 0.88
   2 ?   -1.2   0.0       2.3   1.4e+03     100     123 ..     155     178 ..     146     189 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.2e-05
   IstB_IS21 49 nivllGpsGvGKshlaialgvea 71
                 ++++G +GvGKs la a+++e 
  KIR65539.1 77 PLLITGKPGVGKSTLAYAVAHEL 99
                589*****************985 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.3
   IstB_IS21 100 aralkrllkvdllilDdlgllpld 123
                  +al  + ++++l++D++   ++d
  KIR65539.1 155 GTALLPYEHPRVLLIDEIDKSDVD 178
                 56677788999******9877765 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00012     0.078      36      58 ..      78     100 ..      67     114 .. 0.90
   2 ?   -0.9   0.0       1.9   1.2e+03      76      96 ..     155     175 ..     133     194 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00012
      RuvB_N  36 vllyGpPGlGkttlakiiakelg 58 
                 +l++G PG+Gk+tla  +a+el 
  KIR65539.1  78 LLITGKPGVGKSTLAYAVAHELA 100
                 689******************86 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.9
      RuvB_N  76 aalltnleekdvlfideihrl 96 
                  + l   e+  vl+idei + 
  KIR65539.1 155 GTALLPYEHPRVLLIDEIDKS 175
                 555666677889*****9875 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.6e-05     0.048      25      42 ..      78      95 ..      69     101 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.6e-05
      AAA_29 25 tlltGpsGsGKSTllDAi 42
                 l+tG+ G+GKSTl  A+
  KIR65539.1 78 LLITGKPGVGKSTLAYAV 95
                79***********97665 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.7e-05     0.036     118     153 ..      64      99 ..      48     102 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.7e-05
       T2SSE 118 iaevlrkavrerglilvsGgTgsGKttllyallkei 153
                   e++++a+  r  +l++G  g GK+tl+ya+ +e+
  KIR65539.1  64 ELELINAALYLRRPLLITGKPGVGKSTLAYAVAHEL 99 
                 56899999999********************99987 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00013     0.085       3      36 ..      79     114 ..      78     170 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00013
                 EEEESTTSSHHHHHHHHHTS..TEEESSSTTSSSSE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge..kaivsdkpgtTrdi 36 
                 +i G+p vGKStL  a   e     v ++p t r +
  KIR65539.1  79 LITGKPGVGKSTLAYAVAHElaLGPVLRWPVTSRST 114
                 699*************99874334777777776655 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00014     0.089       4      26 ..      78     100 ..      75     102 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
                  EEEEESTTSSHHHHHHHHHHHHH CS
  ArsA_ATPase   4 ilvgGKGGVGKttvsaatavkls 26 
                  +l++GK GVGK+t++ a+a +l+
   KIR65539.1  78 LLITGKPGVGKSTLAYAVAHELA 100
                  79*****************9987 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00019      0.12      42      75 ..      67     100 ..      64     113 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  42 likekklaGravLlaGpsgtGktalaiaiskelg 75 
                 li++     r +L++G++g Gk+ la a+++el+
  KIR65539.1  67 LINAALYLRRPLLITGKPGVGKSTLAYAVAHELA 100
                 66666666789********************996 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00022      0.14       3      35 ..      79     112 ..      78     145 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00022
      AAA_33   3 llvGlpGsGKstlaerllkklg.avllssdtlrr 35 
                 l+ G pG+GKstla  ++ +l+ + +l+ ++ +r
  KIR65539.1  79 LITGKPGVGKSTLAYAVAHELAlGPVLRWPVTSR 112
                 678***************9999877777666544 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00037      0.24      20     113 ..      77     188 ..      63     193 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00037
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa..eelg.ieastiakllkrlk...............grarlepgtllivDEagmv 100
                   ++tG +G GK+t+  a+++ ++        +++ ++ A+ L   +++g ++ +++++ l +++               +   +e+ ++l++DE+   
  KIR65539.1  77 PLLITGKPGVGKSTLAYAVAHELALGPVLRWPVTSRSTLADGLYsyDAIGrLQEASLHHQLGTTGdlqigrylrlgplgtALLPYEHPRVLLIDEIDKS 175
                 5789**********9988877666554444578888888999883334443244444444444446888999999999874445566799999999999 PP

      AAA_30 101 dtkqlaallkaae 113
                 d +  ++ll++ e
  KIR65539.1 176 DVDLPNDLLNIFE 188
                 9988888888766 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00075      0.48       2      27 ..      75     100 ..      74     218 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00075
      AAA_14   2 rkilvitGaRrvGKTtllkqlikell 27 
                 r++l+itG   vGK+tl++ +++el 
  KIR65539.1  75 RRPLLITGKPGVGKSTLAYAVAHELA 100
                 5789*****************98876 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00039      0.25      34      53 ..      80      99 ..      69     102 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00039
                EEE-TTSSHHHHHHHHHHHH CS
        MeaB 34 ltGvPGaGkstlvealglel 53
                +tG PG+Gkstl  a++ el
  KIR65539.1 80 ITGKPGVGKSTLAYAVAHEL 99
                8***********99999887 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0004      0.25       8      29 ..      79     100 ..      75     104 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
        ParA   8 vlSgKGGVGKStvavnlAlaLa 29 
                  + gK GVGKSt+a  +A +La
  KIR65539.1  79 LITGKPGVGKSTLAYAVAHELA 100
                 578***************9997 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00069      0.45       6      34 ..      70      98 ..      65     103 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00069
                EEEETTSEEEEEESTTSSHHHHHHHHTTS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  6 lklkegekvaivGenGaGKStLlkllagl 34
                  l+  + + i+G+ G GKStL+ ++a++
  KIR65539.1 70 AALYLRRPLLITGKPGVGKSTLAYAVAHE 98
                5566666788************9998876 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1    0.0011      0.68       9     122 ..      74     184 ..      68     192 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0011
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrA..akel.rerlaalgaeatTiHrlalldfddlltealelle.....eaeeekk 99 
                  +++ll+t+ pG GK+++   +va+ ++lg      +l   +t+r+  a+ l +    + ++ea+  H+l++  + dl+     +l+           +
  KIR65539.1  74 LRRPLLITGKPGVGKSTL-AYAVAHELALGP-----VLRWPVTSRStlADGLySYDAIGRLQEASLHHQLGT--TGDLQ--IGRYLRlgplgT--ALLP 160
                 5789***********965.556666555552.....333333333311112202122233344555555533..12221..223333333221..1222 PP

      AAA_19 100 lqeeellivDEfqdvd.elqyrLl 122
                  ++  +l++DE+   d +l + Ll
  KIR65539.1 161 YEHPRVLLIDEIDKSDvDLPNDLL 184
                 234447777777766666666666 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0006      0.39       5      22 ..      78      95 ..      75     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0006
      AAA_24  5 iliyGpsgiGKTtlakel 22
                +li+G++g+GK+tla+  
  KIR65539.1 78 LLITGKPGVGKSTLAYAV 95
                68************9876 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.14        88      21      43 ..      77      99 ..      66     102 .. 0.89
   2 ?    5.8   0.0     0.017        11     104     130 ..     164     190 ..     158     194 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.14
  DNA_pol3_delta2 21 ayLfeGdegigkkelalnlakal 43
                      +L++G+ g+gk +la ++a++l
       KIR65539.1 77 PLLITGKPGVGKSTLAYAVAHEL 99
                     579***************99987 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.017
  DNA_pol3_delta2 104 kkiiiiedaekmtksAaNalLktlEEP 130
                       ++++i++++k +   +N lL ++EE 
       KIR65539.1 164 PRVLLIDEIDKSDVDLPNDLLNIFEEG 190
                      59***********************95 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0008      0.51      26      57 ..      68      99 ..      65     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0008
       AAA_7 26 lelllknkkpvllvGptGtGKtviikdllkkl 57
                ++  l  ++p+l++G+ G+GK++++  + ++l
  KIR65539.1 68 INAALYLRRPLLITGKPGVGKSTLAYAVAHEL 99
                666777899**************998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2236.92
//
Query:       KIR65540.1  [L=639]
Description: hypothetical protein TK50_09115 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-14   53.2   1.0    1.2e-13   52.2   1.0    1.5  1  Trypsin_2  Trypsin-like peptidase domain


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   1.0   6.6e-18   1.2e-13       1     150 []      33     178 ..      33     178 .. 0.87

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 6.6e-18
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadp..........elDlAllkvssderaglpplplgpsealkggepvyv 89 
                 G++f+v+++   lT+aHvv++ +g +          +++dgr+++a+vv+a p            DlA+l+v  d++ag p++ lg++++++g+ p+  
  KIR65540.1  33 GTAFFVAPGF-ALTCAHVVGGRQGDVL--------PVRWDGRALTARVVHAAPsspggqpvwsPPDLAVLRV-ADAPAGHPCVWLGEQPPPEGT-PLHT 120
                 89*******9.****************........8*****************999988866555*******.**************9999998.**** PP

   Trypsin_2  90 vGyplggeksgsvssGivsgvvesesaasgegesflqtda.atspGsSGGplfd.sdGrvvGl 150
                 vG+   ge+  ++++ + +  ++ ++ ++ +g   l+    +++ Gs G+p++d ++G+v ++
  KIR65540.1 121 VGF--AGEH--ATAEATPAWPRS-AGPQGVRGAAALRLRGdELAKGSPGSPVLDlTTGEVCAM 178
                 ***..4444..566666666666.677778888888777768889***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 4236.93
//
Query:       KIR65541.1  [L=215]
Description: hypothetical protein TK50_09120 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-15   55.3   2.8    1.2e-14   54.2   2.8    1.6  1  DUF402    Protein of unknown function (DUF402)


Domain annotation for each model (and alignments):
>> DUF402  Protein of unknown function (DUF402)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   2.8   6.8e-19   1.2e-14       4      68 .]      82     150 ..      80     150 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 6.8e-19
                 EEEE-TT-SEEEEEEEETTTEEEEEEEEEES--EE......E.EEE-EEEEEEESEEE......-HHHH CS
      DUF402   4 lwllplglwynvfhfldgdgrlqglYvDiatppev...ge.gawktiDlyLDlvvspdgevevlDedEL 68 
                 l +lp g+ ++v++f d+ gr+ ++Yv++++p  +   g+   ++++D +LD+v+ pd+++e  De+E+
  KIR65541.1  82 LKFLPVGEAHSVWWFSDAAGRFSHWYVNLEEPGVRwddGDlAGVDMVDQDLDVVIRPDRTWEWKDEEEF 150
                 6799***************************988876544644***********99************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       196  (0.010932); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1407.28
//
Query:       KIR65542.1  [L=153]
Description: 30S ribosomal protein S16 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-23   82.3   0.1    3.7e-23   81.3   0.1    1.5  1  Ribosomal_S16  Ribosomal protein S16


Domain annotation for each model (and alignments):
>> Ribosomal_S16  Ribosomal protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.1   2.1e-27   3.7e-23       1      62 []       9      67 ..       9      67 .. 0.94

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 2.1e-27
                   EESCTTCEEEEEEEEETTSSTTSSESEEEEEEETTTTSSTS.SEEE-HHHHHHHHHTTEEEE CS
  Ribosomal_S16  1 RfGrknrPfYrivvadsrkprdgrpiEklGtYdPlakkkekkevelneerikyWlgvGAqpt 62
                   R+G+ ++P Yrivvadsr++rdgr iE +G+Y+P    ++++++e++ er++yWl+vGAqp+
     KIR65542.1  9 RMGKIRNPQYRIVVADSRSKRDGRAIEFVGVYQPK---EDPSVIEVKSERVQYWLSVGAQPS 67
                   9*********************************3...34568******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1078.79
//
Query:       KIR65543.1  [L=77]
Description: hypothetical protein TK50_09130 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-18   65.9   0.1    2.5e-18   65.7   0.1    1.1  1  KH_4      KH domain
     0.0023   17.7   0.5     0.0028   17.5   0.5    1.2  1  KH_2      KH domain
  ------ inclusion threshold ------
      0.021   14.9   0.6      0.037   14.1   0.6    1.4  1  KH_5      NusA-like KH domain
      0.021   14.6   0.1       0.04   13.8   0.1    1.5  1  KH_1      KH domain


Domain annotation for each model (and alignments):
>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.1   5.7e-22   2.5e-18       3      61 ..       6      64 ..       4      73 .. 0.93

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 5.7e-22
        KH_4  3 lvedilkalvddpeevevteeeeeeeveielnvegedlGrvIGkrGrtldAlqylvsaa 61
                ++e+++k++vd+p++v+v++ ++++++++e++v++edlG vIG+ Grt++Al++++  +
  KIR65543.1  6 ALEHLVKGIVDHPDDVRVRLVDNRRGKRLEVRVHPEDLGTVIGRSGRTAKALRQVIGSI 64
                689****************************************************9876 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.5   6.2e-07    0.0028      20      70 ..      26      73 ..       7      75 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6.2e-07
                EECCS.CEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEEEE CS
        KH_2 20 Ierta.nrviiviresqpgivIGkgGsnikkigkelrkdieklegkkVklni 70
                +++ + +r+++ ++ +  g vIG+ G++ k++++ ++ +     g+ V+++i
  KIR65543.1 26 VDNRRgKRLEVRVHPEDLGTVIGRSGRTAKALRQVIGSIG----GRGVRVDI 73
                3445569**************************9998776....55555555 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.6   8.2e-06     0.037       2      46 ..      31      75 ..      30      76 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.2e-06
        KH_5  2 GertkvaVkshnpnvdpvGaivgkkGsrikavsseLk.....gekidvve 46
                G+r  v V+ ++     +G+++g++G+  ka+ + +      g ++d+v+
  KIR65543.1 31 GKRLEVRVHPED-----LGTVIGRSGRTAKALRQVIGsiggrGVRVDIVD 75
                778888899999.....*****************9999999999999985 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   8.9e-06      0.04       2      27 ..      34      59 ..      33      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.9e-06
                EEEEEGGGHHHHHHTGGGHHHHHHHH CS
        KH_1  2 lrilvPsslvgriIGkgGsnIkeIre 27
                l++ v+ +  g +IG+ G++ k +r+
  KIR65543.1 34 LEVRVHPEDLGTVIGRSGRTAKALRQ 59
                688999999***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 556.27
//
Query:       KIR65544.1  [L=185]
Description: 16S rRNA processing protein RimM [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-23   81.4   0.0    7.8e-23   80.5   0.0    1.5  1  RimM      RimM N-terminal domain
    1.8e-07   31.1   0.0      3e-07   30.4   0.0    1.4  1  PRC       PRC-barrel domain


Domain annotation for each model (and alignments):
>> RimM  RimM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   8.7e-27   7.8e-23       2      83 ..       5     101 ..       4     102 .. 0.87

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 8.7e-27
                 EEEEEEEETTTTEEEEEE-SSSGGGGGGSSSEEEE........ETTE...........EEEE-EEEEEEETTEEEEEETT--SHHHHHTTTT-EEEEET CS
        RimM   2 vGkIvgahGlkGevkVkpftdfpealfkygrvlle.......akkge...........treltvesvrvhkkgvivklegvddrdaAealkgaelfvpr 82 
                 vG+I+++hG++Gev+V++ td+pea+f++g+vl         a   +           ++ ltves+r+h+++ +v +eg+  rd Aeal+g+ l v+ 
  KIR65544.1   5 VGRIGKPHGIRGEVTVEVRTDEPEARFAPGSVLATepgaappA---NpapgpgvpfrvPAALTVESARWHQGRMLVAFEGIGERDVAEALRGTLLGVDS 100
                 9**********************************66665551...144555667766778**********************************9987 PP

                 T CS
        RimM  83 s 83 
                 +
  KIR65544.1 101 A 101
                 6 PP

>> PRC  PRC-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   3.3e-11     3e-07       2      78 ..     110     182 ..     109     183 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 3.3e-11
                 EECCS---TT-EEEETTSSEEEEEEEEEEETTTTEEEEEEEEETTT.....-EEEEEGG.....CEECCCTEEEETTS-GG CS
         PRC   2 defrasdliGkeVytedGeklGkVkDvvidekegrvralvvsvggflgigekevliPfd....lavkigkdriivdapkel 78 
                 +ef  ++l+G+  +t  Ge+lG+V  +   + + +++ l  ++g       ++ liPf+    ++v++ ++r++vd+p +l
  KIR65544.1 110 EEFHDHQLVGLAAVTPAGEHLGEVVKIDHAP-ASDLLVLRRPEG-------RTALIPFVraivPEVDLAGGRVVVDPPGGL 182
                 79*************************6665.***********9.......**************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1411.98
//
Query:       KIR65545.1  [L=262]
Description: tRNA (guanine-N1)-methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-63  213.3   0.0      3e-63  213.1   0.0    1.0  1  tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase


Domain annotation for each model (and alignments):
>> tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.1   0.0   1.7e-67     3e-63       2     195 .]      22     229 ..      21     229 .. 0.97

  Alignments for each domain:
  == domain 1  score: 213.1 bits;  conditional E-value: 1.7e-67
                  GGSHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEETSSHHHHHHHHHHHCCGH........HCGG-TTEEEESSCGGHHHHCCCHHHCGGGEEEEETTT CS
  tRNA_m1G_MT   2 kkasekelvslevqllrdytanrrntvddelygggagmvlkaepelealesv........ntekwkvilltptGkkftqelaeeLsekeklvylcgdy 91 
                  ++a++ + ++l+v++lr++t++ ++tvdd++yggg+gmv+ +ep++eal+++         +  +++++++p G++ftq++a eL+ +++l++ cg+y
   KIR65545.1  22 GRARAAGTLRLAVHDLRSWTHDVHRTVDDTPYGGGPGMVMRPEPWGEALDALapaelapdGVTLPRLLVPSPAGEPFTQAMAHELAAESHLLFACGRY 119
                  689999*********************************************999987666557899******************************** PP

                  SSBECCGGTTSSE.....EEEEESSSSTTCSTTHHHHHHHHHHHHTTTC..EEB-S-CCC...CHCTS..CTTSEHHTEHHHHHHHHHCCCTTTHHHH CS
  tRNA_m1G_MT  92 egvdervdddkvd.....eysIGdfVlkggekgalvlidavkrllaGvl.ntaslpedsfsnrllekpnytrpltlrglkVpeiLlsgnhakienWrl 183
                  eg+d+rv d++++     e+s+Gd+Vl gge ++lv+ +av rll+Gvl n+ sl e+s++ +lle+p yt+p t+rg +Vpe+L+sg+h++i++Wr+
   KIR65545.1 120 EGIDQRVLDHAATrmrvtEVSLGDYVLFGGEVAVLVILEAVTRLLPGVLgNAGSLDEESHAHGLLEAPMYTKPATWRGHEVPEVLRSGDHGRIARWRR 217
                  ***********999************************************************************************************ PP

                  HHHHHHHSCSXS CS
  tRNA_m1G_MT 184 kealertvprRk 195
                  +eal rt +rR+
   KIR65545.1 218 DEALTRTAARRP 229
                  ***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1797.73
//
Query:       KIR65546.1  [L=118]
Description: 50S ribosomal protein L19 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-46  156.7   2.7      2e-46  156.5   2.7    1.0  1  Ribosomal_L19  Ribosomal protein L19


Domain annotation for each model (and alignments):
>> Ribosomal_L19  Ribosomal protein L19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   2.7   1.1e-50     2e-46       2     111 .]       3     112 ..       2     112 .. 0.97

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 1.1e-50
  Ribosomal_L19   2 likeiekeqlkkdlpefkvGdtvkVkvkikegkkeRiqafeGvviarkgkgisetftvRkisegvgvervfplhspkiekievvrrgkvrrakLyY 97 
                    +++++++++ + d+p+f++GdtvkV+ +++eg+++R+q+f+Gvvi+r+g g++etf vRk+s gvgver++p++sp i++ie+v+rg vrrakLyY
     KIR65546.1   3 ILDALDAQSKRVDIPQFRAGDTVKVHARVVEGSRSRVQIFQGVVIRRQGDGLRETFSVRKMSFGVGVERTYPVNSPAIDRIEIVTRGAVRRAKLYY 98 
                    677888899999************************************************************************************ PP

  Ribosomal_L19  98 Lrelkgkaarikek 111
                    Lrel+gk+a+ike+
     KIR65546.1  99 LRELRGKKAKIKER 112
                    ************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 803.56
//
Query:       KIR65547.1  [L=294]
Description: signal peptidase I [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-18   66.3   1.5    3.8e-10   39.6   0.1    2.7  2  Peptidase_S24    Peptidase S24-like
    1.7e-08   34.4   0.0    4.1e-08   33.1   0.0    1.7  1  Peptidase_S26    Signal peptidase, peptidase S26
  ------ inclusion threshold ------
      0.018   15.2   0.4        7.9    6.6   0.1    2.8  3  MaoC_dehydrat_N  N-terminal half of MaoC dehydratase


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.1   6.3e-14   3.8e-10       2      39 ..      55      96 ..      54     110 .. 0.92
   2 !   25.2   0.1   1.9e-09   1.2e-05      27      69 ..     116     155 ..     113     156 .. 0.86

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 6.3e-14
                   XXSSTTCCTXXTTXEEEEECTS....---TTSEEEEEETTCE CS
  Peptidase_S24  2 vpGdSMeptlldGdlilVdkfs....epkrGdivvfrlpgee 39
                   +p++SMe+tll++d++lV+k +    +p+rG++vvfr  +++
     KIR65547.1 55 IPSGSMEDTLLINDRVLVNKVVydvrDPQRGEVVVFRGTDKW 96
                   9******************99999*************99997 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 1.9e-09
                    TTSEEEEEETTCE-EEEEEEEEETTEEEEE.SSTT.STEEEECT CS
  Peptidase_S24  27 rGdivvfrlpgeeeayiKrviglpgdrvllasnne.ypplying 69 
                     Gd+v +  pge+ ++iKrviglpgdrv++    + ++++++n+
     KIR65547.1 116 VGDLVGVSRPGEK-DFIKRVIGLPGDRVRCC---DaQGRVTVND 155
                    59**********8.***************76...4477777775 PP

>> Peptidase_S26  Signal peptidase, peptidase S26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   6.8e-12   4.1e-08      51     137 ..     129     225 ..      72     226 .. 0.79

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 6.8e-12
  Peptidase_S26  51 pllKrVlalagqev..cvadgavtidgvavsealerDrkgrplpslq.gcr.......vlaegelfllskevadSfDsRYfGpvpassvigvarpv 136
                     ++KrV++l+g++v  c a+g vt++++++ e+     +  +lp+   +cr       v+++g++f+++++   S D+R  Gpvp ++v+g+a +v
     KIR65547.1 129 DFIKRVIGLPGDRVrcCDAQGRVTVNDIPLDEPYVVRDSPLDLPPNPaECRsrrfdevVVPPGQIFVMGDHRLVSQDARCQGPVPIDNVVGRAFAV 224
                    68**********9744778889*****999998877777777776553444333333389********************************9877 PP

  Peptidase_S26 137 l 137
                    +
     KIR65547.1 225 V 225
                    5 PP

>> MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.94   5.6e+03      88     119 ..      64      94 ..      59     100 .. 0.64
   2 ?    5.6   0.0    0.0027        16      35      62 ..     174     201 ..     166     219 .. 0.76
   3 ?    6.6   0.1    0.0013       7.9      41      61 ..     228     248 ..     225     264 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.94
  MaoC_dehydrat_N  88 iraGDelttesriadvydkkgvGalefivvet 119
                      +   D++ + + + dv+d +  G++ + + + 
       KIR65547.1  64 LLINDRVLVNKVVYDVRDPQ-RGEVVVFRGTD 94 
                      55668888888888888855.36665555555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0027
  MaoC_dehydrat_N  35 deeaaraagyrsliaPptflivlatkap 62 
                      +++ +r+ +++++++Pp   +v++ ++ 
       KIR65547.1 174 NPAECRSRRFDEVVVPPGQIFVMGDHRL 201
                      6899******************998774 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0013
  MaoC_dehydrat_N  41 aagyrsliaPptflivlatka 61 
                      ++++ sl++P+tf++v++ + 
       KIR65547.1 228 SSRWASLPVPETFATVTGPTP 248
                      689*************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2065.92
//
Query:       KIR65548.1  [L=211]
Description: signal peptidase I [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-18   64.2   0.1    1.2e-17   63.6   0.1    1.3  1  Peptidase_S24  Peptidase S24-like
      2e-05   24.4   0.0    4.5e-05   23.3   0.0    1.6  1  Peptidase_S26  Signal peptidase, peptidase S26


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.1   1.3e-21   1.2e-17       1      70 []      40     117 ..      40     117 .. 0.94

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 1.3e-21
                    EXXSSTTCCTXXTTXEEEEECTS....---TTSEEEEEETTCE......-EEEEEEEEETTEEEEE.SSTT.STEEEECTC CS
  Peptidase_S24   1 rvpGdSMeptlldGdlilVdkfs....epkrGdivvfrlpgee......eayiKrviglpgdrvllasnne.ypplyingk 70 
                    ++p+ SMe tl+++d++lV+k +    +p+rG++vvf+ p e+      e++iKrvig +gd+v +    + ++++ ingk
     KIR65548.1  40 YIPSPSMENTLQINDRVLVNKLVydfrSPHRGEVVVFKAPTEWsgnpdgEDFIKRVIGVGGDHVVCC---DpQERIMINGK 117
                    69******************9999999**************************************66...55999999986 PP

>> Peptidase_S26  Signal peptidase, peptidase S26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0     5e-09   4.5e-05      19     118 ..      68     161 ..      50     163 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 5e-09
  Peptidase_S26  19 leklevgdlvlvepPeelaalaaergylprgvpllKrVlalagqev..cvadgavtidgvavseal..erDrkgrplpslqgcrvlaegelfllsk 110
                        ++g++v++++P e     +       g  ++KrV+++ g++v  c  ++ ++i+g ++ e+   ++  +  + +  +   ++++g l+++++
     KIR65548.1  68 P---HRGEVVVFKAPTEWSGNPD-------GEDFIKRVIGVGGDHVvcCDPQERIMINGKPIDEPYiySANGQQDKAADQEFDITVPQGRLWVMGD 153
                    3...4488888888886666555.......6789**********9844556789*****777776511455555556666678899********** PP

  Peptidase_S26 111 evadSfDs 118
                    + ++S Ds
     KIR65548.1 154 HRSASGDS 161
                    99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1578.51
//
Query:       KIR65549.1  [L=270]
Description: ribonuclease HII [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-36  124.8   0.0      5e-36  124.4   0.0    1.1  1  RNase_HII  Ribonuclease HII


Domain annotation for each model (and alignments):
>> RNase_HII  Ribonuclease HII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   0.0   2.8e-40     5e-36       1     197 [.      31     209 ..      31     210 .. 0.95

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 2.8e-40
                 EEEEEE-TT-SBS-EEEEEEEECGHHHHHHHCTTGTTGTTS-HHHHHHHHHHHHSEEEEEEE-HHHHH.HHTTTS-HHHHHHHHHHHHHHHHHHTCEEC CS
   RNase_HII   1 iGiDEaGrGpvlGplvvaavavekereeelkklgvkDSKkLskqkreeLaklikkkiekrklvaeeikyaseneinlneikaaltlaviklleklgvkv 99 
                 +G DEaGrG+++Gplv+aa+++++ r+ e+   g++DSK L++  re + +++      + + a+ ++  +++e++++++++++++a++++l+ l+ ++
  KIR65549.1  31 AGADEAGRGACAGPLVAAAAVLPEGRRGEI--DGLADSKLLTPASRERVYEQVV-----ARALAYAVVVIPADEVDARGLHVCNLAAMRRALASLATRP 122
                 69*************************755..699******************9.....7778888888****************************** PP

                 CECCCE--SSHHHHHHHHHHHHCCEEEEETTGGGT-HHHHHHHHHHHHHHH.HHHHHHHHHCS.H.--TTSSTTSHHHHHHHHHHHHHS--TTB-TTSH CS
   RNase_HII 100 deilvdgvttpeslkkkleqiikikvtvekkadekyllvaaASiiAkverd.eelellkrkpg.tldkgsGyasdektrallkkgatsklpdivrlsfk 196
                 d++l dg++    l+ +  ++ k        +d+ +++vaaAS++Akv+rd +++el +++pg ++++++Gy ++e+t+al++ g++      +r+s+ 
  KIR65549.1 123 DYVLTDGFGVDG-LDVPGLAVWK--------GDRVAACVAAASVLAKVTRDrMMVELDAAFPGyGFAEHKGYITAEHTAALRELGPCR----EHRFSYV 208
                 *********988.9999999988........********************************************************9....8888887 PP

                 H CS
   RNase_HII 197 t 197
                 +
  KIR65549.1 209 N 209
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2229.16
//
Query:       KIR65550.1  [L=107]
Description: hypothetical protein TK50_09170 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-53  178.8   7.0    2.9e-53  178.6   7.0    1.0  1  DUF2469   Protein of unknown function (DUF2469)


Domain annotation for each model (and alignments):
>> DUF2469  Protein of unknown function (DUF2469)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.6   7.0   1.6e-57   2.9e-53       1     100 []       1     100 [.       1     100 [. 0.99

  Alignments for each domain:
  == domain 1  score: 178.6 bits;  conditional E-value: 1.6e-57
     DUF2469   1 msaedlekyetevelalyreyrdvvslfkyvveterrfylanevdlkvrseegevyfevkledawvwdvyrsarfvkkvrvltfkdvnveelekeelel 99 
                 msaedlekyete+el+lyreyrd+v +f+yvveterrfylan+vdl+vr+++gevyfev+++dawvwd+yr+arfvk+vrv+tfkdvnveelek +++l
  KIR65550.1   1 MSAEDLEKYETEMELQLYREYRDIVRQFSYVVETERRFYLANQVDLHVRNSDGEVYFEVEMHDAWVWDMYRPARFVKNVRVMTFKDVNVEELEKPDISL 99 
                 9************************************************************************************************99 PP

     DUF2469 100 p 100
                 p
  KIR65550.1 100 P 100
                 8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 814.83
//
Query:       KIR65551.1  [L=393]
Description: aminotransferase V [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-22   80.7   0.0    1.4e-22   80.2   0.0    1.2  1  Aminotran_5      Aminotransferase class-V
    4.2e-08   32.9   1.7    1.3e-07   31.3   1.7    1.7  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    1.6e-07   30.2   0.0    2.3e-07   29.7   0.0    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    3.4e-06   26.5   0.0    5.3e-06   25.8   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   3.2e-26   1.4e-22      39     292 ..      59     304 ..      34     317 .. 0.90

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 3.2e-26
                  HHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEE..EEEEEBETTSCBEGGGHHH CS
  Aminotran_5  39 keatkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgak..vkvipldeegeldldelek 134
                    + + ++ +r ++a++++a+  + +  + ++t+++++v++sl+  l+pgde+++t+ ++ a      + ++rtga+  +  +pl+++ e  ++ +++
   KIR65551.1  59 LSLVDRITHTRRHLAAFLGADP-DGTALVGNATTGVAVVLQSLG--LRPGDEVLTTDHGYGAVGFSVDRECRRTGATrrILPVPLTATDEQVVEIVRA 153
                  556678899************7.99999***************5..9*****************************7225555889999999****** PP

                  H--.TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTT.TTSSTT-EEEEEEHHHHHTS..SS.STTS CS
  Aminotran_5 135 lln.ektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghK.llgPtGiGvlyvrkellekleplllggem 230
                   l+  +tkl+ + +  ++t  ++pv++i+++a+++g+ vlvDaa a g     v+ +g+Df +   hK  ++P G+ +l+v +    ++epl ++ e 
   KIR65551.1 154 GLRpGRTKLLVVDQLTSATARLFPVAAIVAAARAHGVPVLVDAAHAPGMLATPVASVGADFWVGNLHKwGYAPRGTAALVVAPPWRDRMEPLVVSWE- 250
                  **9679**************************************************************99**********************99999. PP

                  EEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC CS
  Aminotran_5 231 veevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlk 292
                        ++++f ++    +a T    ++ +  a +  l+++g+e++++h+++la+y +  l 
   KIR65551.1 251 ------QDAGFPGNVE-WQA-TLDYTSWLAAPAGVWTLRSLGVERVRAHNAALAAYGQRVLG 304
                  ......8888777766.777.*********************************99888775 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   1.7   2.8e-11   1.3e-07      30     151 ..      70     202 ..      63     212 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 2.8e-11
                      HHHHHHHT..-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHH....HHTT-EEEEE-B-TTTSS.B-GGGCGGG--T.TEEEE CS
  DegT_DnrJ_EryC1  30 kafaaylg..vkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanav....lelgakpvfvDvdpdtyn.idpaaieaaite.rtkaI 115
                      + +aa+lg   +    v ++t++++++L+ lg+ pgdeV+++ +++ a   +v    +++ga+   + v  +      ++ ++a + + rtk  
       KIR65551.1  70 RHLAAFLGadPDGTALVGNATTGVAVVLQSLGLRPGDEVLTTDHGYGAVGFSVdrecRRTGATRRILPVPLTATDeQVVEIVRAGLRPgRTKLL 163
                      567888884223355699****************************998777632225678776665554433330334555566666366766 PP

                      EEB-GGGB--...-HHHHHHHHHHCT-EEEEE-TT-TT- CS
  DegT_DnrJ_EryC1 116 lpVhlyGqva...dmdalkaiaakhglkvieDaAhAlGa 151
                      ++  l ++ a    ++a+ a a++hg++v+ DaAhA G 
       KIR65551.1 164 VVDQLTSATArlfPVAAIVAAARAHGVPVLVDAAHAPGM 202
                      666666665533378999999***************885 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   5.1e-11   2.3e-07      78     198 ..      91     221 ..      66     224 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 5.1e-11
                      HHHHHHHHTT.S-TTEEEEEESTSSHHHHHHHHHTHHHTTCE.......EEEESTTSHHHHHHHCCT.TEEEEEEESS-TTTT----HHHHHHH CS
  Cys_Met_Meta_PP  78 aAiaaailal.lkaGdeivvsddlYggtqrllkkvlkklgie.......vkfvdtsdleelekaike.ntklvylEtptnpllkvvDiekiakl 162
                      + +a+++++l l+ Gde++++d+ Yg     +++ ++++g +        + +d + +e +++ +++ +tkl+ ++ +t+ + ++  +++i+++
       KIR65551.1  91 TGVAVVLQSLgLRPGDEVLTTDHGYGAVGFSVDRECRRTGATrrilpvpLTATDEQVVEIVRAGLRPgRTKLLVVDQLTSATARLFPVAAIVAA 184
                      33444555554678************999999998888887611111114556667888888999999************************** PP

                      HHHTT-EEEEEGTTTHTTTS-GGG.GT-SEEEEETTT CS
  Cys_Met_Meta_PP 163 akkagvlvvvDntfaspllqrplk.lgaDivvhSaTK 198
                      a+++gv+v+vD++ a ++l  p++  gaD  v    K
       KIR65551.1 185 ARAHGVPVLVDAAHAPGMLATPVAsVGADFWVGNLHK 221
                      **********************963789977766655 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.2e-09   5.3e-06      49     198 ..      68     206 ..      38     222 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.2e-09
                    HHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-T....HHHHHHHHTTSE..EEEEEBEETTTTEE-HHHHHHH CS
  Aminotran_1_2  49 leealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptya....syknilrlsgge..vvryplyseedfhldlealeea 138
                     +  la flg       +++++ +vg+ ++ ++++l  l  l pgde+l  d  y+    s+++ +r  g++  + ++pl+  ++ +  +e + + 
     KIR65551.1  68 TRRHLAAFLG------ADPDGTALVGNATTGVAVVLQSLG-LRPGDEVLTTDHGYGavgfSVDRECRRTGATrrILPVPLT--ATDEQVVEIVRAG 154
                    57889*****......9***********************.**************955555799*******9445555555..4444455555555 PP

                    HTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSS CS
  Aminotran_1_2 139 lkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl 198
                    l+       +tk+++v    + t  +++ + +++    a+++++ ++vD a+a +++ ++
     KIR65551.1 155 LRPG-----RTKLLVVDQLTSATARLFPVAAIVAA---ARAHGVPVLVDAAHAPGMLATP 206
                    5553.....88**********************99...***************9999855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3151.82
//
Query:       KIR65552.1  [L=345]
Description: integrase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-39  133.1   0.0    2.4e-38  131.6   0.0    1.7  2  Phage_integrase  Phage integrase family
    2.2e-14   53.5   1.8    2.4e-14   53.4   0.4    1.8  2  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
  ------ inclusion threshold ------
       0.14   12.7   0.0       0.41   11.1   0.0    1.7  2  Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.61   3.7e+03      66      83 ..      83     101 ..      61     117 .. 0.46
   2 !  131.6   0.0   3.9e-42   2.4e-38      21     170 ..     182     330 ..     175     332 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.61
                      SEEEEECT.HHHHHHHHHH CS
  Phage_integrase  66 keravpls.eealellkel 83 
                       +r+ +    +a++++  +
       KIR65552.1  83 AARTTMARrAAAARAFSAW 101
                      2222222213333333333 PP

  == domain 2  score: 131.6 bits;  conditional E-value: 3.9e-42
                      HHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHH...CHCCTTTSBSSBETTSSB--HHHH CS
  Phage_integrase  21 irdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellska...leeaeksellfaskrgkplsrqtv 111
                      +rd+ llelly+tG+RisE+++L+  d+d  ++v++v    gKgs+er vp +  a ++l e+l      l    + ++l++ +rg +l   t+
       KIR65552.1 182 LRDRVLLELLYATGVRISEACGLDTADVDQGRRVVRV---LGKGSRERSVPYGVPAQRALDEWLRAGrpaLAGPGSGDALLLGARGGRLHPTTA 272
                      69***********************************...*************************999988888899***************** PP

                      HHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCC CS
  Phage_integrase 112 rkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthva 170
                      r+++  ++e++g+  ++tpH lRhs+at+Lle g+dlr+vq+llGHss+ +tqiYthv+
       KIR65552.1 273 RRVVAGYAEATGLP-RTTPHGLRHSAATHLLEGGADLRAVQELLGHSSLGSTQIYTHVS 330
                      *************9.******************************************97 PP

>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.4   4.1e-18   2.4e-14       1      84 []      23     106 ..      23     106 .. 0.97
   2 ?   -2.6   0.0       1.2   7.3e+03      29      72 ..     311     337 ..     306     341 .. 0.41

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 4.1e-18
                      HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHH.TS--TTT--HHHHHHHHHS----------HHHHHHHHHHHHHHHHHTT CS
  Phage_int_SAM_1   1 leqfleyLikerglspnTlraYrrdLrrflkflaergkesleqlttedvraflaeleeeglsatslarrlsalrsFfqflvreg 84 
                      ++ f ++L  +r++s++T+raY+ dL ++++++a  g   ++ l+   vr++la+ +  g ++t+ arr +a r+F +++ r+g
       KIR65552.1  23 VDDFADHLARVRNRSAHTVRAYVGDLVSLFDHAARMGCAEVADLDLGVVRSWLAKQRTTGAARTTMARRAAAARAFSAWAHRAG 106
                      578********************************9999*****************************************9876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.2
                      HHHHHHH.TS--TTT--HHHHHHHHHS-----...-----HHHHHHH CS
  Phage_int_SAM_1  29 flkflaergkesleqlttedvraflaeleeeg...lsatslarrlsa 72 
                      +++ l +                    +       ++  s+ r ++a
       KIR65552.1 311 VQELLGH--------------------SSLGStqiYTHVSVERLRAA 337
                      4444444....................22222233444444444444 PP

>> Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.9e-05      0.41      44      80 ..      21      57 ..      18      62 .. 0.91
   2 ?   -2.5   0.0       1.2   7.4e+03       8      34 ..      77     103 ..      72     108 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.9e-05
  Phage_int_SAM_4 44 edieaYlnyLanerklsastqknalnalsffykkvle 80
                     e + ++  +La+ r+ sa t++ +   l +++ ++++
       KIR65552.1 21 EAVDDFADHLARVRNRSAHTVRAYVGDLVSLFDHAAR 57
                     77999***************************99875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
  Phage_int_SAM_4   8 alrlaglserTiksYlsaikrflrflk 34 
                      + r  g + +T+     a + f ++ +
       KIR65552.1  77 KQRTTGAARTTMARRAAAARAFSAWAH 103
                      344455556666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2671.08
//
Query:       KIR65553.1  [L=396]
Description: DNA processing protein DprA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-63  212.5   0.9    4.6e-63  212.3   0.0    1.5  2  DNA_processg_A  DNA recombination-mediator protein A
    3.8e-08   33.1   0.8    3.8e-08   33.1   0.8    1.7  2  LDcluster4      SLOG cluster4 family
      1e-05   25.6   4.1      1e-05   25.6   4.1    2.6  2  DprA_WH         DprA winged helix domain
  ------ inclusion threshold ------
      0.011   15.8   0.6      0.048   13.7   0.6    2.2  1  HTH_20          Helix-turn-helix domain
      0.012   15.4   0.0       0.11   12.3   0.1    2.2  2  HTH_DeoR        DeoR-like helix-turn-helix domain
      0.014   15.4   4.8         11    6.1   0.1    4.1  4  HTH_29          Winged helix-turn helix
      0.037   14.0   0.0      0.077   13.0   0.0    1.5  1  HTH_36          Helix-turn-helix domain
      0.057   13.4   0.0       0.15   12.0   0.0    1.7  1  MarR            MarR family
      0.058   13.2   0.5      0.058   13.2   0.5    3.2  3  HTH_IclR        IclR helix-turn-helix domain
        1.4    8.9  11.5       0.18   11.7   0.9    3.8  3  MarR_2          MarR family


Domain annotation for each model (and alignments):
>> DNA_processg_A  DNA recombination-mediator protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.3   0.0   2.6e-66   4.6e-63       3     208 ..      75     298 ..      73     300 .. 0.95
   2 ?   -2.7   0.2       1.6   2.8e+03      79      93 ..     344     358 ..     344     362 .. 0.82

  Alignments for each domain:
  == domain 1  score: 212.3 bits;  conditional E-value: 2.6e-66
  DNA_processg_A   3 ekagiklltledkeYPeklkei...............kdpPlvLfvkGnlelle..kravaiVGtRkaseygkevakklakelaeagitivSGlA 80 
                     ++ g++l+t++d e+P++++++               + pPl+ +v+G + l +   rav++VG+R+a++yg +va++l + la++++t+vSG+A
      KIR65553.1  75 QRLGARLVTPGDGEWPATVEHLrrlalpgatrrvdveTAPPLCFWVRGGWPLGDalDRAVSVVGARAATPYGVHVATELGYGLADRDWTVVSGGA 169
                     677899***************98889999988888766899*******999988889************************************** PP

  DNA_processg_A  81 lGiDaaahraaleaggktvavlgtgldkiyPkenrklleeiaeegglllseyppgtkpkkenFpeRnriiaglseavlvveaaekSGalitaelA 175
                     +GiDaaahr+al+agg tvavl++g+d+ yP  n +l+++i  e+gll+se +pg++p + +F+ Rnr+ia+ ++++++vea  +SGa +t++ A
      KIR65553.1 170 FGIDAAAHRGALNAGGLTVAVLACGIDRPYPMGNTALFDRIG-ETGLLVSEWLPGSEPLRPRFLIRNRVIAAATRGTVLVEASARSGATQTVNRA 263
                     *****************************************9.66************************************************** PP

  DNA_processg_A 176 lelgrevfavpgditskesagtnklikeg..aklv 208
                     l+ gr+ ++vpg++ts++s g ++l++e+  a+lv
      KIR65553.1 264 LAAGRHAMVVPGPVTSAMSVGAHELLREHpsARLV 298
                     ***************************98655555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.6
  DNA_processg_A  79 lAlGiDaaahraale 93 
                     +A+G+D+ a ra ++
      KIR65553.1 344 GAVGVDRLAARAGVD 358
                     599******998775 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.8   2.1e-11   3.8e-08       3      63 ..     133     191 ..     131     198 .. 0.94
   2 ?   -2.0   0.1       1.3   2.3e+03     100     127 ..     247     274 ..     232     292 .. 0.56

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2.1e-11
  LDcluster4   3 kigVmGsaeteakeealelaeelGrliAkegavlltGgrtGvmeaaskGakeagGltvGil 63 
                  ++V+G+ +  a++  ++ a elG+ +A +++++++Gg  G+  aa +Ga +agGltv +l
  KIR65553.1 133 AVSVVGARA--ATPYGVHVATELGYGLADRDWTVVSGGAFGIDAAAHRGALNAGGLTVAVL 191
                 689***999..899999*****************************************876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
  LDcluster4 100 viaiggrsGTlsEialaleegkpvivlk 127
                 ++  + rsG+++ +  al +g+  +v+ 
  KIR65553.1 247 LVEASARSGATQTVNRALAAGRHAMVVP 274
                 3333445566666666665555555544 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.8      0.11     2e+02       8      40 ..      45      80 ..      42      84 .. 0.79
   2 !   25.6   4.1   5.6e-09     1e-05       4      61 .]     320     381 ..     316     381 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
     DprA_WH  8 pplddlerrvLaaL...gpePvhvDqLvrrtglpaa 40
                +p+d l+++v a+     + +v+ D+L+r+  l a+
  KIR65553.1 45 APDDRLRAAVAARCrdgDARAVAADALARAQRLGAR 80
                688999999999996655669********9777665 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 5.6e-09
     DprA_WH   4 ppaeppl...ddlerrvLaaL.gpePvhvDqLvrrtglpaaevsaaLleLELaGlverlpGg 61 
                 +++++p    dd++ +vL+ +    +v vD L++r+g+++++ ++ L+ LE  Glv+r+ +g
  KIR65553.1 320 RAPQRPRdllDDEATQVLESMpRRGAVGVDRLAARAGVDVRTALRKLSLLEELGLVRRRDDG 381
                 33433323349**********5568*********************************9776 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.6   2.7e-05     0.048      20      60 ..     341     381 ..     327     382 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.7e-05
                 STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTE CS
      HTH_20  20 araegltaselaerldlskntlsyHLrvLeeagLvevvreg 60 
                 +r++++ +  la+r +++  t+ + L  Lee gLv++++ g
  KIR65553.1 341 PRRGAVGVDRLAARAGVDVRTALRKLSLLEELGLVRRRDDG 381
                 6777888889***************************9987 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.32   5.8e+02       6      27 ..      13      34 ..      12      36 .. 0.87
   2 ?   12.3   0.1   6.1e-05      0.11       4      53 ..     335     384 ..     333     387 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.32
    HTH_DeoR  6 lellkqqgklsveelvellgvS 27
                l +l++ g+ sv +lv++lg +
  KIR65553.1 13 LTWLAEPGTRSVHRLVDELGAA 34
                5789999***********9965 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 6.1e-05
    HTH_DeoR   4 qilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavs 53 
                 q le   ++g + v++l+++ gv   T+ R L+ Lee gl++R   G+++
  KIR65553.1 335 QVLESMPRRGAVGVDRLAARAGVDVRTALRKLSLLEELGLVRRRDDGYAL 384
                 67888899***********************************8888766 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0063        11      30      61 ..      22      54 ..      13      56 .. 0.88
   2 ?   -2.5   0.0         3   5.3e+03      15      44 ..     186     215 ..     180     224 .. 0.64
   3 ?    4.4   0.0     0.021        37      40      63 .]     310     335 ..     300     335 .. 0.79
   4 ?    4.1   0.4     0.027        48      11      48 ..     345     378 ..     342     391 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0063
      HTH_29 30 yrwlkrfeegGlaalld.rrrsgrprnrlseeq 61
                + ++++ +e G+a++ld   r+g+p +rl +++
  KIR65553.1 22 RSVHRLVDELGAAGALDlLLRGGAPDDRLRAAV 54
                66789999*****************99*99886 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3
      HTH_29  15 vsqiAkllglsrrtvyrwlkrfeegGlaal 44 
                    ++ ++g++r++ +    +f+  G+ +l
  KIR65553.1 186 LTVAVLACGIDRPYPMGNTALFDRIGETGL 215
                 456777888888766666666666665555 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.021
      HTH_29  40 Glaa.lld.rrrsgrprnrlseeqea 63 
                 +++a l +  r++ rpr++l++e  +
  KIR65553.1 310 RIGAdLAPpARAPQRPRDLLDDEATQ 335
                 4555677889***********99865 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.027
      HTH_29  11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrr 48 
                 +v+ v ++A++ g++ rt  r l + ee G   l +rr
  KIR65553.1 345 AVG-VDRLAARAGVDVRTALRKLSLLEELG---LVRRR 378
                 577.99************************...66543 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.3e-05     0.077      28      55 .]     348     375 ..     333     375 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.3e-05
      HTH_36  28 qetlakrlglsknTvsraikeLeqlGyi 55 
                 +++la+r g++++T+ r + +Le+lG++
  KIR65553.1 348 VDRLAARAGVDVRTALRKLSLLEELGLV 375
                 689***********************85 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.3e-05      0.15       8      52 ..     336     380 ..     331     381 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.3e-05
                 HHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEE CS
        MarR   8 iLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRsks 52 
                 +L++  ++g+  v  La + gv+  t+ r l  Le+ Gl++R+ +
  KIR65553.1 336 VLESMPRRGAVGVDRLAARAGVDVRTALRKLSLLEELGLVRRRDD 380
                 6777778999********************************975 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       0.7   1.3e+03      34      48 ..      23      37 ..      23      39 .. 0.79
   2 ?   -2.1   0.1       1.9   3.4e+03      11      30 ..     237     256 ..     236     259 .. 0.81
   3 ?   13.2   0.5   3.2e-05     0.058       8      51 ..     336     378 ..     331     379 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.7
                HHHHHHHHHHHTTSE CS
    HTH_IclR 34 tvhRlLqtLvelGyv 48
                +vhRl+  L   G +
  KIR65553.1 23 SVHRLVDELGAAGAL 37
                79***9998777665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.9
                 T-CTTBSS-BHHHHHHHHTS CS
    HTH_IclR  11 alaeapqeltlselArrtgl 30 
                  +a+a+++  l e ++r+g 
  KIR65553.1 237 VIAAATRGTVLVEASARSGA 256
                 68999999889999999986 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 3.2e-05
                 HHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR   8 iLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqd 51 
                 +L+   +++  +++  lA+r+g+   t+ R L+ L+elG+v++ 
  KIR65553.1 336 VLESMPRRGA-VGVDRLAARAGVDVRTALRKLSLLEELGLVRRR 378
                 5555544444.89*****************************96 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.58     1e+03      38      51 ..      24      37 ..      21      65 .. 0.63
   2 ?    1.8   0.2      0.13   2.3e+02      35      49 ..     253     267 ..     251     267 .. 0.92
   3 ?   11.7   0.9    0.0001      0.18       9      56 ..     335     380 ..     329     384 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.58
                HHHHHHHHHHTTSE CS
      MarR_2 38 vsrilkrLvaaGLv 51
                v+r++++L aaG +
  KIR65553.1 24 VHRLVDELGAAGAL 37
                66666666666643 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHTT CS
      MarR_2  35 ksavsrilkrLvaaG 49 
                 +s ++++++r+ aaG
  KIR65553.1 253 RSGATQTVNRALAAG 267
                 799**********98 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.0001
                 HHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2   9 rvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpg 56 
                 +vL    rr+   + v  la+r g++  ++ r l  L++ GLv+rr++
  KIR65553.1 335 QVLESMPRRGA--VGVDRLAARAGVDVRTALRKLSLLEELGLVRRRDD 380
                 56666667776..88999****************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3132.58
//
Query:       KIR65554.1  [L=506]
Description: Mg chelatase-like protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-81  272.4   0.0    2.9e-81  271.8   0.0    1.3  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
    3.5e-39  133.4   0.0    5.5e-39  132.8   0.0    1.3  1  ChlI             Subunit ChlI of Mg-chelatase
    1.3e-24   86.7   0.2    7.8e-24   84.1   0.1    2.1  2  Mg_chelatase_C   Magnesium chelatase, subunit ChlI C-terminal
    9.5e-07   28.6   0.3    1.6e-06   27.8   0.3    1.3  1  Lon_C            Lon protease (S16) C-terminal proteolytic do
      1e-05   25.5   0.0      0.049   13.6   0.0    2.3  2  AAA_5            AAA domain (dynein-related subfamily)
    0.00011   22.5   0.0    0.00049   20.4   0.0    1.9  1  AAA_22           AAA domain
    0.00013   21.2   0.0    0.00048   19.3   0.0    1.8  2  MCM              MCM P-loop domain
     0.0041   17.5   0.0      0.015   15.7   0.0    1.9  2  AAA_16           AAA ATPase domain
     0.0047   16.6   0.0       0.38   10.4   0.0    2.2  2  Sigma54_activat  Sigma-54 interaction domain
  ------ inclusion threshold ------
      0.018   15.5   0.0       0.07   13.6   0.0    2.0  1  AAA              ATPase family associated with various cellul
      0.023   14.4   0.0      0.062   13.0   0.0    1.7  1  AAA_30           AAA domain
      0.026   14.3   0.0       0.62    9.8   0.0    2.6  3  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.055   13.2   0.0      0.078   12.7   0.0    1.2  1  AAA_24           AAA domain
      0.088   13.0   0.0       0.31   11.2   0.0    1.9  2  AAA_33           AAA domain
       0.31   11.7   5.3        4.7    7.9   0.4    3.0  3  DUF2285          Uncharacterized conserved protein (DUF2285)


Domain annotation for each model (and alignments):
>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.8   0.0   2.4e-84   2.9e-81       1     206 [.     190     396 ..     190     397 .. 0.97

  Alignments for each domain:
  == domain 1  score: 271.8 bits;  conditional E-value: 2.4e-84
  Mg_chelatase   1 dlkdvkGqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvag.kkeeekllkrrpfraphhsaskaalvGggs. 95 
                   dl++v+Gq   +rale+aaaGgH+l l+GppG+GKtmla+rlps+lp+l+++ alev++++s+ag   +  +ll+r+pf+aphh+a+ a+lvGggs 
    KIR65554.1 190 DLSEVAGQALGRRALEVAAAGGHHLALFGPPGAGKTMLAERLPSILPALDDDAALEVTALHSIAGlLPAGGRLLRRPPFQAPHHTATVASLVGGGSg 286
                   89***************************************************************77788899999********************8 PP

  Mg_chelatase  96 kpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpcgklkdkekectcsekeierYlsklsgplldR 192
                    ++pG++slah+GvLfLDE+pef + +le+LR+Ple+g+v+++r++  +e+par+qlv+a+Npcpc++ +  ++ c+c++  ++rYl +lsgplldR
    KIR65554.1 287 LARPGAVSLAHRGVLFLDEAPEFGKGALEALRQPLEHGRVQLARSRGGTEYPARTQLVLAANPCPCARPA-GDAYCECAPLVRRRYLGRLSGPLLDR 382
                   99****************************************************************9876.6789********************** PP

  Mg_chelatase 193 idlqvevkkleaee 206
                   id+qv+++ l+a+e
    KIR65554.1 383 IDVQVTLPPLRAAE 396
                   ******99987765 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.8   0.0   4.6e-42   5.5e-39       1     121 []      21     143 ..      21     143 .. 0.98

  Alignments for each domain:
  == domain 1  score: 132.8 bits;  conditional E-value: 4.6e-42
        ChlI   1 vevdvskglpkftivGlpdtavkeskervrsalknsgfefpakkitvnLaPadlkkeGsafDLpiAigilaaleqieae..eetlflGeLsldGslrpv 97 
                 ve+d++ glp+++i Glpdta  e+++rvr+a+ nsg ++p+++it+nL Pa l+k GsafDL+iA+++l  +++ +    e++++lGeL+ldG++rpv
  KIR65554.1  21 VEADLAPGLPAVAISGLPDTALHEARDRVRAAIVNSGQRWPNRRITLNLLPATLPKFGSAFDLAIAVALLGGSGELPLLplERVVVLGELGLDGTVRPV 119
                 89************************************************************************99988889***************** PP

        ChlI  98 kgvlpialaakkegikkvivpken 121
                 +gvlp+++aa+++g+++v+vp  n
  KIR65554.1 120 RGVLPMVAAAARAGLHRVVVPVGN 143
                 *********************876 PP

>> Mg_chelatase_C  Magnesium chelatase, subunit ChlI C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.5   1.8e+03       6      32 ..      44      68 ..      41      79 .. 0.79
   2 !   84.1   0.1   6.5e-27   7.8e-24       1      93 []     404     501 ..     404     501 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.5
  Mg_chelatase_C  6 evrerVaaAreiqkeRfakenaelsge 32
                    e r+rV aA   + +R+   n +++ +
      KIR65554.1 44 EARDRVRAAIVNSGQRW--PNRRITLN 68
                    6799************9..66666655 PP

  == domain 2  score: 84.1 bits;  conditional E-value: 6.5e-27
  Mg_chelatase_C   1 gesSaevrerVaaAreiqkeRfake....naelsgeelrev.celdeeaeelleeaierlglsaRaydrilkvArTiADLegseeieeehlaeAl 90 
                     gesSa+v++rVaaAr+++++R+a++    nae++g +lr+  ++l  ++++ l+  +++++lsaR++dr++++A+TiADL+g+++++++++ eA+
      KIR65554.1 404 GESSATVAARVAAARRAAADRWAGSgwrvNAEVPGPWLRRPpWRLPGRDTRELRGRLDSGSLSARGFDRVVRMAWTIADLDGRDRPHADDVREAM 498
                     69********************988999***********977***************************************************** PP

  Mg_chelatase_C  91 qyR 93 
                     q+R
      KIR65554.1 499 QLR 501
                     *98 PP

>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.3   1.4e-09   1.6e-06      38     181 ..      14     152 ..       5     168 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.4e-09
                 TEEEEEEEEEEEESS-S-EEEEES--HHHHHHHHHHHHHHTSS-GGGSS-SS-TTT-EEEEEE-S-B-GGGGGGGHHHHHHHHHHHHTS--B..-TTBE CS
       Lon_C  38 vGGdlltieavllpgkgklkltGklgdvmkesaqaalsyvrsraeelgidkevfekkdihihvPeGavPkdGPsaGvtlatalvslltgkkv..rkdva 134
                 v G+++ +ea l pg   + + G     ++e    a   vr+   + g   + + +++i + +   ++Pk G +  +++a+al+    + +    + v 
  KIR65554.1  14 VTGHVVEVEADLAPGLPAVAISGLPDTALHE----ARDRVRAAIVNSG---QRWPNRRITLNLLPATLPKFGSAFDLAIAVALLGGSGELPLlpLERVV 105
                 5677777777777777777777754444444....4455665555544...4578899999999999****************9988887752257899 PP

                 E--EE-TT-BEE--S-HHHHHHHHHHTT-SBEEEEGGGGGGTTTS-H CS
       Lon_C 135 mtGeitLrGrvlpiGGlkekllaakragikkvilPkenekdlediPe 181
                 + Ge+ L G v p+ G+   + aa rag+++v++P  n+ + + +P 
  KIR65554.1 106 VLGELGLDGTVRPVRGVLPMVAAAARAGLHRVVVPVGNAAEAAVVPG 152
                 9**************************************99999985 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   4.1e-05     0.049       1      23 [.     213     235 ..     213     252 .. 0.77
   2 !    9.6   0.0   0.00073      0.87      66     124 ..     298     351 ..     279     361 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.1e-05
                 EEEEE--SSSSHHHHHHHGGGGB CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal 23 
                 ++ L GppG gK++laerl + l
  KIR65554.1 213 HLALFGPPGAGKTMLAERLPSIL 235
                 5789**************98887 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00073
                 -SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---......-EEEEEESS-- CS
       AAA_5  66 geilvlDEveraesevlnsLlslleerrllleeggelvkaknddllerfrviatanpld 124
                   +l+lDE  +  + +l++L ++le+ r++l+ +++ +  ++      ++++ +anp +
  KIR65554.1 298 RGVLFLDEAPEFGKGALEALRQPLEHGRVQLARSRGGTEYPAR-----TQLVLAANPCP 351
                 579****************************998887776664.....78888888876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.1e-07   0.00049       6     117 ..     212     322 ..     208     331 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.1e-07
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav.......iellii 97 
                  +l+++G++G+GKT+l++rl + l++        ++ +  +++++ s + ll +  r l ++   +++ +  + +++   +  ++        +++l +
  KIR65554.1 212 HHLALFGPPGAGKTMLAERLPSILPAL-------DDDAALEVTALHSIAGLLPAGGRLLRRPPFQAPHHTATVASLVGGGSGLARPgavslahRGVLFL 303
                 689*******************99863.......44456677777777888888888888888884444444444444433333334557778888888 PP

      AAA_22  98 DEaqhlrseealeeLrslln 117
                 DEa  +  + ale Lr+ l+
  KIR65554.1 304 DEAPEF-GKGALEALRQPLE 322
                 888888.8888888876555 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.92   1.1e+03      55      81 ..     209     235 ..     198     238 .. 0.81
   2 !   19.3   0.0   4.1e-07   0.00048     111     174 ..     287     350 ..     270     389 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.92
                 CSS-EEEEEESSTSTHHHHHHHHHHHS CS
         MCM  55 rgdinvllvgdpgtaKsqlLkyvekla 81 
                  g  ++ l g pg +K+ l +++ +++
  KIR65554.1 209 AGGHHLALFGPPGAGKTMLAERLPSIL 235
                 5677999**********9988776665 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 4.1e-07
                 EEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--S CS
         MCM 111 vleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpk 174
                     Ga+ la++Gv+ +De  +  +   +al   +E+  +++a++   +  +art ++ Aanp 
  KIR65554.1 287 LARPGAVSLAHRGVLFLDEAPEFGKGALEALRQPLEHGRVQLARSRGGTEYPARTQLVLAANPC 350
                 5678***************************************98888**************96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       7.5   8.9e+03       6      24 ..     155     173 ..     145     175 .. 0.82
   2 !   15.7   0.0   1.3e-05     0.015      12      49 ..     199     235 ..     195     279 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 7.5
      AAA_16   6 eeeleqLlsalervrsgrp 24 
                  + +++L+++++ vr+g+p
  KIR65554.1 155 VRAVDTLHRMVDFVRDGTP 173
                 5678889999999999887 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.3e-05
      AAA_16  12 L.lsalervrsgrpelvllsGesGvGKsslvrellrale 49 
                 L ++ale +++g+ + + l G++G GK+ l+++l+  + 
  KIR65554.1 199 LgRRALEVAAAGG-HHLALFGPPGAGKTMLAERLPS-IL 235
                 5578999777776.99*****************995.43 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.035        42      16      42 ..     205     231 ..     195     244 .. 0.82
   2 !   10.4   0.0   0.00032      0.38      83     123 ..     287     327 ..     282     351 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.035
                      HHHCTSSS-EEEECSTTSSHHHHHHHH CS
  Sigma54_activat  16 kkvaktdlsvlitGesGtGKellarai 42 
                      + +a+   ++ + G  G+GK++la+ +
       KIR65554.1 205 EVAAAGGHHLALFGPPGAGKTMLAERL 231
                      455666688999************976 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00032
                      S-BEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEE CS
  Sigma54_activat  83 kekkGlfekadgGtlfLDeigelplelQekLlrvlqegeve 123
                       ++ G+++ a+ G+lfLDe  e+   + e L + l++g+v+
       KIR65554.1 287 LARPGAVSLAHRGVLFLDEAPEFGKGALEALRQPLEHGRVQ 327
                      5688***************9999998888888888888775 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.8e-05      0.07       2      19 ..     215     232 ..     214     327 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.8e-05
                 EEESSTTSSHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakava 19 
                  l+GppG GKT+la+ + 
  KIR65554.1 215 ALFGPPGAGKTMLAERLP 232
                 599***********9775 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.2e-05     0.062       8     114 ..     202     323 ..     196     329 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
      AAA_30   8 aavealltsgdrvavltGpAGtGKttalkalreaweaag..........grviglAptgkaAkvLa..........eelgieastiakllkrlk..... 81 
                 +a+e ++++g+   +l Gp+G+GKt++ + l  ++ a            +++         A  L            ++  +++t+a+l+         
  KIR65554.1 202 RALEVAAAGGH-HLALFGPPGAGKTMLAERLPSILPALDddaalevtalHSI---------AGLLPaggrllrrppFQAPHHTATVASLVGGGSglarp 290
                 67777777776.88999**************999999954544444333333.........33333122222233346667999999999766699999 PP

      AAA_30  82 grarlepgtllivDEagmvdtkqlaallkaaek 114
                 g+++l+++ +l  DEa   +   l+al + +e+
  KIR65554.1 291 GAVSLAHRGVLFLDEAPEFGKGALEALRQPLEH 323
                 778999999999999999998888888776665 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00052      0.62      34      51 ..     212     229 ..     191     247 .. 0.86
   2 ?    1.1   0.0      0.25     3e+02      81     121 ..     294     334 ..     288     345 .. 0.84
   3 ?   -3.1   0.0       4.7   5.7e+03     143     157 ..     373     387 ..     371     389 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00052
      RuvB_N  34 dhvllyGpPGlGkttlak 51 
                  h+ l+GpPG Gkt la+
  KIR65554.1 212 HHLALFGPPGAGKTMLAE 229
                 6999************97 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.25
      RuvB_N  81 nleekdvlfideihrlsraveevlysamedfrldivigkGp 121
                 +l ++ vlf+de   + + + e l + +e  r+++   +G 
  KIR65554.1 294 SLAHRGVLFLDEAPEFGKGALEALRQPLEHGRVQLARSRGG 334
                 688999*********99999999999999999888776665 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 4.7
      RuvB_N 143 gllssPlrdrfgiva 157
                 g ls Pl dr+ ++ 
  KIR65554.1 373 GRLSGPLLDRIDVQV 387
                 78999****998876 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.5e-05     0.078       5      27 ..     214     235 ..     211     317 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.5e-05
      AAA_24   5 iliyGpsgiGKTtlakelgpkpl 27 
                 ++++Gp+g+GKT+la +l p++l
  KIR65554.1 214 LALFGPPGAGKTMLAERL-PSIL 235
                 789***************.7766 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       9.3   1.1e+04     106     121 ..      38      53 ..      28      62 .. 0.72
   2 ?   11.2   0.0   0.00026      0.31       4      21 ..     216     233 ..     214     247 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9.3
      AAA_33 106 tdeetlkeRlakRaan 121
                 +d +++++R ++Raa 
  KIR65554.1  38 PDTALHEARDRVRAAI 53 
                 6777888888888764 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00026
      AAA_33   4 lvGlpGsGKstlaerllk 21 
                 l G+pG+GK+ laerl  
  KIR65554.1 216 LFGPPGAGKTMLAERLPS 233
                 67*************964 PP

>> DUF2285  Uncharacterized conserved protein (DUF2285)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.027        32      41     105 ..     228     295 ..     194     297 .. 0.85
   2 ?    7.9   0.4    0.0039       4.7      50      86 ..     397     433 ..     365     436 .. 0.84
   3 ?   -2.9   0.1       8.7     1e+04      21      51 ..     473     503 ..     456     505 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.027
     DUF2285  41 rrrllhlLqalD..arlagaslreiAevl.fgaervaaedWkdsalrsrvrrlvrrgralmrGGYrkL 105
                 ++rl  +L alD  a l+   l+ iA  l  g + +++ ++++ +  ++v+ lv  g  l+r G  +L
  KIR65554.1 228 AERLPSILPALDddAALEVTALHSIAGLLpAGGRLLRRPPFQAPHHTATVASLVGGGSGLARPGAVSL 295
                 6889999999963368889999*******7777777777*******************9999886666 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0039
     DUF2285  50 alDarlagaslreiAevlfgaervaaedWkdsalrsr 86 
                  ++a ++g+s  ++A+ +  a+r aa+ W+ s++r +
  KIR65554.1 397 LMEAGATGESSATVAARVAAARRAAADRWAGSGWRVN 433
                 4566778889999**********99*9******9965 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 8.7
     DUF2285  21 alagrapgplaralaltpqqrrrllhlLqal 51 
                  ++ + + ++   + +++    r+++ L++ 
  KIR65554.1 473 VVRMAWTIADLDGRDRPHADDVREAMQLRMG 503
                 3333333333333444444444555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3477.79
//
Query:       KIR65555.1  [L=119]
Description: hypothetical protein TK50_09200 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-26   91.3   0.0      4e-26   91.1   0.0    1.1  1  UPF0102   Uncharacterised protein family UPF0102
     0.0019   17.6   0.0     0.0026   17.2   0.0    1.1  1  NucS      Endonuclease NucS


Domain annotation for each model (and alignments):
>> UPF0102  Uncharacterised protein family UPF0102
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.0   4.5e-30     4e-26       1      79 []      12     102 ..      12     102 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 4.5e-30
                 HHHHHHHHHHHTT-EEEEEEEEETTEEEEEEE..TTEEEEEEEEE-......-------HHHHHHHHHHHHHHH..........EEEEEEE CS
     UPF0102   1 gEelaaeyLekkgyeilernwrcragEiDiia..tevlvfvEVKtRssekfgspaeavtprKqrrlrraaeayl..........rfDvvav 79 
                 gE+ a+++L  +g++ ++rnwrc agEiDiia  + vl+f+EVKtR+++++g+paeav p+K rrlr +a+ +l          rfDv++v
  KIR65555.1  12 GERCAVRHLIGAGLRPVARNWRCPAGEIDIIAwdGPVLAFCEVKTRRTTHYGTPAEAVVPAKARRLRGLAARWLaetgttagevRFDVLSV 102
                 79********************************889***************************************************987 PP

>> NucS  Endonuclease NucS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.9e-07    0.0026     119     160 ..      19      59 ..      15      64 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.9e-07
        NucS 119 dLieeGfkpvareyavaiGivdiLgkdeegklvivelkrrka 160
                 +Li+ G +pvar++  ++G +di++ d    l   e+k r++
  KIR65555.1  19 HLIGAGLRPVARNWRCPAGEIDIIAWDGP-VLAFCEVKTRRT 59 
                 8************************9964.456679998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 786.54
//
Query:       KIR65556.1  [L=464]
Description: hypothetical protein TK50_09205 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      149  (0.00831056); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 3038.22
//
Query:       KIR65557.1  [L=287]
Description: 30S ribosomal protein S2 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-95  318.3   0.0      2e-95  318.1   0.0    1.0  1  Ribosomal_S2  Ribosomal protein S2


Domain annotation for each model (and alignments):
>> Ribosomal_S2  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.1   0.0   1.1e-99     2e-95       1     215 []       9     225 ..       9     225 .. 0.98

  Alignments for each domain:
  == domain 1  score: 318.1 bits;  conditional E-value: 1.1e-99
  Ribosomal_S2   1 LLeagvhfGhqtrrwnpkmkpyIygerngihiidlektlaalrraykvvkevaakggkilfvgtkkqakeavkeaakrangyyvnerWlgGtLTNfk 97 
                   LLe+gvhfGhqtrrwnpkmk++I++erngi+iidl++tl ++++ay++v++++a+gg+ilfvgtkkqa+ea++e+a+r++++yvn+rWlgG+LTNf+
    KIR65557.1   9 LLESGVHFGHQTRRWNPKMKRFIFTERNGIYIIDLRQTLDYIEKAYDFVRNTVAEGGSILFVGTKKQAQEAIAEQATRVGQPYVNHRWLGGMLTNFQ 105
                   8************************************************************************************************ PP

  Ribosomal_S2  98 tikksikklkeleele.edgeld.ltkkealklkkekekleknlggikkmkklPdlvvvldpkkekiavkEakklgipviaivDtnvdpdlvdypIp 192
                   t+ k+++++kele+l   +g+   +tkke+l+l++ek kl+k+lgg+++m+klP++v+++d+kke+iav Ea+klgipvia++Dtn+dpd+vd+pIp
    KIR65557.1 106 TVYKRLQRMKELEALGdLSGTAAgYTKKETLQLSREKIKLTKTLGGLRDMQKLPAAVWIVDTKKEHIAVDEARKLGIPVIAVLDTNCDPDEVDFPIP 202
                   **************9856777778************************************************************************* PP

  Ribosomal_S2 193 aNddsirsiklilgvladaieeg 215
                   +Ndd+irs +l+++v+a a+++g
    KIR65557.1 203 GNDDAIRSAELLTRVVAAAVADG 225
                   *******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1963.08
//
Query:       KIR65558.1  [L=275]
Description: elongation factor Ts [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-64  217.4   0.6    2.2e-64  216.9   0.6    1.2  1  EF_TS     Elongation factor TS
  ------ inclusion threshold ------
      0.027   14.2   1.0       0.62    9.8   0.1    2.7  2  DUF348    G5-linked-Ubiquitin-like domain


Domain annotation for each model (and alignments):
>> EF_TS  Elongation factor TS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.9   0.6   2.4e-68   2.2e-64       2     208 .]      68     274 ..      67     274 .. 0.98

  Alignments for each domain:
  == domain 1  score: 216.9 bits;  conditional E-value: 2.4e-68
       EF_TS   2 vivevnsETDFVAknekFqelvkkvaeaaleekakdleellalkledetveealkekiakigEkielrrfakleaekevvasYiHgn.....grigvlv 95 
                 +++e+n+ETDFVAkn+ F++l+++++e+  ++ a+++eella++++++ v++ ++e+ akigEk++l+rfakl++   +va Y+H++       +gvlv
  KIR65558.1  68 ALLELNCETDFVAKNDAFIALAQQLVEHGEASGATSAEELLASSIDGKPVADLIQEQSAKIGEKLVLNRFAKLDG---TVAVYLHRKsqdlpPAVGVLV 163
                 689************************************************************************...78*******9999999***** PP

       EF_TS  96 alegksdealkelakqiAmhiaAmnPqylsedevdaevlekekeilkeqakeegkpekiiekiveGrlekflkevcLleQeyvkddkktVeqvlkeask 194
                 +++gk+dea  + a+ +Am+iaAm+P+yl++dev+a+v+e+e++i++++a+ee+kp++ + kiveGr++ f+k+++L+eQ+ v d+kktV+qvl+ea+ 
  KIR65558.1 164 EYAGKTDEAGDADARGVAMQIAAMRPKYLTRDEVPADVVESERRIAEQTALEENKPAAALPKIVEGRVNAFFKDYVLIEQASVADNKKTVKQVLAEAGI 262
                 ********9***************************************************************************************998 PP

       EF_TS 195 elkvvkfvrfevGe 208
                   +v++f rfevG+
  KIR65558.1 263 --EVTRFLRFEVGQ 274
                 ..**********95 PP

>> DUF348  G5-linked-Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.018   1.6e+02      19      33 ..     117     131 ..     113     134 .. 0.91
   2 ?    9.8   0.1     7e-05      0.62      16      30 ..     250     264 ..     245     266 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.018
                 HHHHHHHTT----TT CS
      DUF348  19 VgdlLeeagitlgeq 33 
                 V+dl++e++ ++ge+
  KIR65558.1 117 VADLIQEQSAKIGEK 131
                 9********999985 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 7e-05
                 -SSHHHHHHHTT--- CS
      DUF348  16 adTVgdlLeeagitl 30 
                 + TV+++L+eagi++
  KIR65558.1 250 KKTVKQVLAEAGIEV 264
                 78***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2030.64
//
Query:       KIR65559.1  [L=255]
Description: uridylate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-26   93.1   0.3    2.3e-26   92.9   0.3    1.1  1  AA_kinase     Amino acid kinase family
     0.0041   17.1   1.0        2.9    7.8   0.1    3.0  2  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.3   2.5e-30   2.3e-26       2     240 ..      25     232 ..      24     233 .. 0.92

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 2.5e-30
                 EEEEEE-TTCCCCTCC....HHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHT CS
   AA_kinase   2 rvVvKlGGssltdkee....aslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaa 96 
                 rvV+Kl G +++ +      ++++++a+qia+ +++g ++ vV+Ggg+f +g   +k+g+++ ++                 d++++lg+ ++   l+ 
  KIR65559.1  25 RVVLKLSGEVFGGGAIgvdpDVVQAIARQIATVVRRGVQVSVVVGGGNFFRGAELQKRGMDRARA-----------------DYMGMLGTVMNCLALQD 106
                 8999999999995555699999********************************99889998888.................9**************** PP

                 THGEEEE-GGGTCEECCCE..HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEE.SSSSCESSTTTTCC CS
   AA_kinase  97 glpavglsaaaldateagrdegsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliilt.dVdGVydadpkkvp 194
                  l++ g+  +   a++  +      + e +      + le+g v++++ ++g++       +s+Dt+aa  A +++Ad ++  +  VdGVy+adp+++p
  KIR65559.1 107 FLEKEGIETRVQSAITMAQ------VAEPYIPLRAIRHLEKGRVVIFGAGAGMP------YFSTDTVAAQRALEIRADVVLMSKnGVDGVYTADPRIDP 193
                 ***************9999......88888888888888***999999998666......89***************999998878************* PP

                 TTCECCEEEHHHCHHCSSS.TTTHHHHCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 195 darllpeisvdeaeesaselatgGmkvkhpaalaaarrggipvvIt 240
                 +a +l+ i+++e++           +v + aa+ +++++g p+ ++
  KIR65559.1 194 TASKLDSITFSEVLR-------RNLRVADAAAFSLCMENGLPMLVF 232
                 ***************.......999999*******99999999986 PP

>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1   0.00086       7.7      73     124 ..      77     127 ..       9     130 .. 0.90
   2 !    7.8   0.1   0.00032       2.9       4      89 ..     146     247 ..     130     248 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00086
  TP_methylase  73 aealragkdVvllv.sGDPlvygtgselvealrareagieveviPGvsslqaa 124
                   ae+ ++g+d +++  +G+      + +l ++l++  +gie++v  +++ +q a
    KIR65559.1  77 AELQKRGMDRARADyMGMLGTVMNCLALQDFLEK--EGIETRVQSAITMAQVA 127
                   78889999999999999999999999********..9***********99976 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00032
  TP_methylase   4 lVGvGpGdp..ellTvrAlralk.tadvvlgddsraleilldllaeel.........eleapmgkekepleea............yeeiaealaeal 76 
                   + G+G G p     Tv+A ral+ +advvl ++ +  + +  ++++                     e+l+++            +e+   +l+  +
    KIR65559.1 146 IFGAGAGMPyfSTDTVAAQRALEiRADVVLMSK-NGVDGVYTADPRIDptaskldsiTF-------SEVLRRNlrvadaaafslcMENGLPMLVFGA 234
                   445555555336679**************8777.5333332222222122222222211.......1222222222233355565566666666666 PP

  TP_methylase  77 ragkdVvllvsGD 89 
                   + + +++++v+GD
    KIR65559.1 235 QGDDTIIRAVGGD 247
                   6666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 1999.94
//
Query:       KIR65560.1  [L=185]
Description: ribosome-recycling factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-57  194.5   0.1    1.4e-57  194.2   0.1    1.1  1  RRF       Ribosome recycling factor
  ------ inclusion threshold ------
        1.6    9.4   5.8        1.6    9.4   2.4    2.3  2  DUF883    Bacterial protein of unknown function (DUF883)


Domain annotation for each model (and alignments):
>> RRF  Ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.2   0.1   1.5e-61   1.4e-57       2     162 .]      21     183 ..      20     183 .. 0.98

  Alignments for each domain:
  == domain 1  score: 194.2 bits;  conditional E-value: 1.5e-61
                 HHHHHHSS-SSSSCGGGTTSEEEETTEEEEGGGTEEEEESSTTEEEEEESSCCHHHHHHHHHHHSCC-SEEEEESSEEEEE--SSSHHHHHHHHHHHHH CS
         RRF   2 kkelsklrtgranpslldnikVeyygkktpLnqlAqvsvkeartllitpfdkslvkaiekaIlksdlglnpqqdgevlrvpipplTeErrkelvkeakk 100
                 k+e+  +rtgran++++ ++ ++yyg++tpL q+A++ v+e+r+++i+p+d+s + a e+aI++sdlg+np+++g++lr+ +p++TeErr+e++k+a++
  KIR65560.1  21 KEEFGAIRTGRANAAMFSKVIIDYYGTPTPLPQMASIGVPEPRMVIIKPYDNSQIGAMERAIRDSDLGVNPNNEGNQLRILLPQMTEERRREMIKVARH 119
                 899************************************************************************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHC..S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
         RRF 101 aaekakvairniRrdankklkklekk..iseDdvkkaekeiqkltdkyikeidellkakekell 162
                 ++e+akva+rniRr+ +++l +l k+  + eD+ ++aek++++lt+k+++ +del+k+ke+ell
  KIR65560.1 120 KGEEAKVAVRNIRRKGKEELDRLVKDgeVGEDEGRRAEKDLDDLTQKFVATVDELVKHKESELL 183
                 *************************669**********************************96 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1       0.1   9.2e+02      31      46 ..       8      23 ..       2      38 .. 0.52
   2 ?    9.4   2.4   0.00018       1.6      12      70 ..     111     169 ..     102     175 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.1
      DUF883 31 elRerleerlerarer 46
                e+ e++e ++e+a+e+
  KIR65560.1  8 EAEEKMERAIEHAKEE 23
                3333444444444443 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00018
      DUF883  12 adleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVr 70 
                  ++ ++++++++ea+  ++++R++ +e+l+r+ +  +  e++ ++  k+  + ++++V 
  KIR65560.1 111 REMIKVARHKGEEAKVAVRNIRRKGKEELDRLVKDGEVGEDEGRRAEKDLDDLTQKFVA 169
                 566789999*********************************99999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1301.25
//
Query:       KIR65561.1  [L=439]
Description: phosphatidate cytidylyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-52  177.6  10.9      5e-52  177.3  10.9    1.0  1  CTP_transf_1  Cytidylyltransferase family
  ------ inclusion threshold ------
       0.15   12.1   2.8         12    5.9   0.2    2.5  2  PgpA          Phosphatidylglycerophosphatase A
       0.47    9.4   8.9       0.81    8.6   8.9    1.3  1  DUF3488       Domain of unknown function (DUF3488)


Domain annotation for each model (and alignments):
>> CTP_transf_1  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.3  10.9   8.4e-56     5e-52       6     266 .]     181     434 ..     177     434 .. 0.86

  Alignments for each domain:
  == domain 1  score: 177.3 bits;  conditional E-value: 8.4e-56
                   HHHHHHHHHHHTTTSH.HHHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHH...HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHH---...HHH CS
  CTP_transf_1   6 talvlilivliilllgglvflllvavvvilalkElirlvrlkkrekrllllllslvlllllllflylesliallklvlllvlvllllvlkvlksksk 102
                   +++ l++ vl+ l++   +fll++a++++++++E+ r vr++    +l+ l+   vl++ l +f+    l+  l +++l  ++++l           
    KIR65561.1 181 VGVGLGAAVLLPLFFYLPAFLLVLAAAIAIGIWEMARAVRRSGAHPPLVPLVAGGVLTVGLAWFAGPDALCLGLLVTVLGTMIWRL-GD----GPGD 272
                   5677888888888888899999999999*****************99999955555555555555555555555555544444444.44....4688 PP

                   HHHHHHHHHHHHHHTHHHH..TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---B-S-TTS---BHHHHHHHHHHHHHHHHHHHHHHHCTS CS
  CTP_transf_1 103 klervilallallyvvlll.qslllienikeglllvllllalvvaaDigaYffGklfGktkllpkiSPkKTveGfigGlvaavvvglllalvlskal 198
                   + +++++a+l ++yv++l   +++l +++ +g+l vl+ l++vv++D+g+Y +G  +Gk+ ++p+iSPkK++eGf g++ aa++ + ll+++l +  
    KIR65561.1 273 YQRDLTAATLIAVYVPFLGgFAAMLAAAPGDGHLRVLVTLVAVVLSDTGGYAAGANLGKHPMAPSISPKKSWEGFAGSVTAAAAGSALLIWLLFD-- 367
                   889999999999999988734566778899***************************************************************99.. PP

                   ---TTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSS-S-SSSSS-HHHHHHHHHHHHHHHHHHHHHH CS
  CTP_transf_1 199 alsllhllllslllslvavfGDLveSglKRafgiKDsGkliPGhGGilDRlDsllfaapvvylllelf 266
                      ++ ++l+++ +s +av+GDL eS++KR++g+KD+++l+PGhGG++DRlDs+lfa+p++ylll++f
    KIR65561.1 368 -VAPWWGALFGVAVSCAAVLGDLAESMIKRDLGVKDMSNLLPGHGGLMDRLDSILFAVPTAYLLLAVF 434
                   .79999*********************************************************99876 PP

>> PgpA  Phosphatidylglycerophosphatase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2    0.0021        13      17      66 ..     176     225 ..     169     267 .. 0.82
   2 ?    5.9   0.2     0.002        12      19      70 ..     352     405 ..     344     407 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0021
                 .--HHHHHHHHHHHTT.HHHHH.HHHHHHHHHHHHHHHHHHHHHT-S-HH CS
        PgpA  17 PgtvgslaalllalllllleslslllllilllflvGiwackktekelgek 66 
                 P  +g  + l  a+ll l+  l ++ll++++++++Giw  +++ ++ g +
  KIR65561.1 176 PAAIGVGVGLGAAVLLPLFFYLPAFLLVLAAAIAIGIWEMARAVRRSGAH 225
                 55556666667777777666666777899*********999998887766 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.002
                 -HHHHHHHHHHHTT.HHHHH.HHH..HHHHHHHHHHHHHHHHHHT-S-HHT-TT CS
        PgpA  19 tvgslaalllalllllleslslll..llilllflvGiwackktekelgekDpge 70 
                 t+     +ll +ll  ++ ++  l  ++++++ ++G  a+++++++lg+kD ++
  KIR65561.1 352 TAAAAGSALLIWLLFDVAPWWGALfgVAVSCAAVLGDLAESMIKRDLGVKDMSN 405
                 4444444455555554444443334799***********************875 PP

>> DUF3488  Domain of unknown function (DUF3488)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   8.9   0.00013      0.81      10     182 ..     187     379 ..     182     397 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00013
     DUF3488  10 alallplalrlplwvlllaalllv..wrl.llarrraplpsrwlllllallavallllsygtllg.rdagvalLvlllalKllEl.....rsrRDalvl 99 
                 a++llpl+ +lp ++l+laa++++  w +  + rr+ + p+ ++   l+++  ++l + + ++ g    ++ lLv++l+  ++ l     + +RD+ + 
  KIR65561.1 187 AAVLLPLFFYLPAFLLVLAAAIAIgiWEMaRAVRRSGAHPP-LV--PLVAG--GVLTVGLAWFAGpDALCLGLLVTVLGTMIWRLgdgpgDYQRDLTAA 280
                 789*************9999888866777555556666666.22..23332..3344444445553344456666666655555522233679999999 PP

     DUF3488 100 lllgffllatsflfsqsllfalylllalllllaalvalh.................asasapslaralrlalkllllalPlalvLFllfPRlqgPLWgl 181
                 +l+++++ ++  +     ++     l +l++l+a v+                   + ++++s+  ++  +++ ++ ++ l  +LF + P   g L+g+
  KIR65561.1 281 TLIAVYVPFLGGFAAMLAAAPGDGHLRVLVTLVAVVLSDtggyaaganlgkhpmapSISPKKSWEGFAGSVTAAAAGSALLIWLLFDVAPWW-GALFGV 378
                 99999999988887665555544444444444444444468999999999999777667777777777777777777777777777777777.777776 PP

     DUF3488 182 p 182
                  
  KIR65561.1 379 A 379
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3147.49
//
Query:       KIR65562.1  [L=383]
Description: RNA methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-18   66.4   0.0    8.6e-18   65.3   0.0    1.6  2  Radical_SAM  Radical SAM superfamily
  ------ inclusion threshold ------
      0.035   14.2   0.0      0.099   12.8   0.0    1.7  1  Fer4_14      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   9.6e-22   8.6e-18       2     162 ..     128     301 ..     127     304 .. 0.90
   2 ?   -3.1   0.0         1   9.2e+03      91     102 ..     337     348 ..     323     352 .. 0.62

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 9.6e-22
                  EEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHH.H.........HTT.SEEEEEESSTGGGSTTHHHHHHHHHHTC......CCTEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.........xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpetvrregrgrslsveeileevkelk.a.........ekg.vkevilgggepllypdfvellerlakla......vpgiritv 82 
                  + + gC ++C+fCa+++     g  r+ls+ ei++++ +l+ +          ++  ++v++g+gepl+++  v+++ r+           + ++itv
   KIR65562.1 128 SSQAGCGMACPFCATGQ----AGLTRNLSTAEIVDQAVYLAgVaasgavagsPPRlSHVVFMGMGEPLANYSRVVAAIRRLVAPapeglgLSQRHITV 221
                  7899************6....9***************99966589999999966669999***********99999999999889************* PP

                  EECSSCHGHHHHHHHHHTT.-SEEEEEEBSSSHH..HHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHH CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  83 etngtlpdeeklerllelg.vdrvslgleaadde..kvlklmnrghtfeevlealeklreagikrvvdrivglpGendeelee 162
                  +t g++p    ++rl+      +++l+l+a+dde  + l ++n ++ + evl++   ++++ ++rv++ + +++++nd+ +++
   KIR65562.1 222 STVGLVP---AIRRLASEDlSVTLALSLHAPDDElrDELVPVNQRWKVAEVLDTAWDYAARTGRRVSIEYAMIKNVNDQPWRA 301
                  *******...*******9999*************8866677777799999999998888888888*************98775 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1
                  HHHHHHHHHTT- CS
                  xxxxxxxxxxxx RF
  Radical_SAM  91 eeklerllelgv 102
                  +e+++rl+ +gv
   KIR65562.1 337 REFVRRLRAAGV 348
                  788888888874 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.1e-05     0.099       6      89 ..     131     225 ..     128     246 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.1e-05
     Fer4_14   6 sgCnlsCkgCd...nketwkselgkpqteelleqilk...dlkkseikiqglvltG.GePLhyenkkellklvkrlkeeype......kkiwletng 89 
                 +gC ++C++C       t + +  ++ ++ +  + ++    +  s  + + +v++G GePL  +n + ++  ++rl+   pe       +i++ t g
  KIR65562.1 131 AGCGMACPFCAtgqAGLTRNLSTAEIVDQAVYLAGVAasgAVAGSPPRLSHVVFMGmGEPL--ANYSRVVAAIRRLVAPAPEglglsqRHITVSTVG 225
                 79********95442223344444555554444444334445555556688**********..9999999999999987766555555666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2750.67
//
Query:       KIR65563.1  [L=397]
Description: cell division protein DivIVA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-10   40.8   2.5      0.013   15.6   0.1    4.1  4  DivIVA    DivIVA protein


Domain annotation for each model (and alignments):
>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   7.4e-07     0.013       9      32 ..       6      31 ..       4      35 .. 0.82
   2 !   12.6   0.1   5.9e-06      0.11       3      37 ..      44      78 ..      42      82 .. 0.89
   3 !    4.2   0.0    0.0025        44      11      30 ..     328     349 ..     320     354 .. 0.73
   4 !    5.8   0.0   0.00079        14       2      31 ..     362     391 ..     361     394 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.4e-07
                ----EEE..EEEEHHHHHHHHHHHHH CS
      DivIVA  9 keFkkkl..rGYdedeVdeFLdqvak 32
                ++F++k   rGY+ deVd+FLd v  
  KIR65563.1  6 QRFRRKAlrRGYKVDEVDAFLDRVEA 31
                7898887656*************965 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.9e-06
                HHHHHH----EEEEEEEHHHHHHHHHHHHHHHHHH CS
      DivIVA  3 plDIknkeFkkklrGYdedeVdeFLdqvakdyeal 37
                 +++++  F+ ++ GYde +Vd  Ld v +++ +l
  KIR65563.1 44 SQEVHDVVFRVRFNGYDEWQVDLHLDRVERQLAEL 78
                57899999********************9998877 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0025
                 --EEEE..EEEHHHHHHHHHHH CS
      DivIVA  11 Fkkklr..GYdedeVdeFLdqv 30 
                 F+ + +  GYd+d+Vd+ ++ +
  KIR65563.1 328 FQVRRFgsGYDPDQVDRLFEGI 349
                 55444334********988766 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.00079
                 -HHHHHH----EEEEEEEHHHHHHHHHHHH CS
      DivIVA   2 tplDIknkeFkkklrGYdedeVdeFLdqva 31 
                  p+D+   +F     GY e+eVd+ L++v 
  KIR65563.1 362 NPKDLDTLRFGLVPGGYFEAEVDAALKDVQ 391
                 5899999********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2731.67
//
Query:       KIR65564.1  [L=67]
Description: hypothetical protein TK50_09245 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-13   50.1   0.1    2.6e-13   49.6   0.1    1.2  1  DUF2631   Protein of unknown function (DUF2631)
  ------ inclusion threshold ------
      0.039   14.1   0.0      0.048   13.8   0.0    1.1  1  SdpI      SdpI/YhfL protein family
        0.2   11.8   0.1        0.2   11.8   0.1    1.8  2  MLTD_N    MltD lipid attachment motif


Domain annotation for each model (and alignments):
>> DUF2631  Protein of unknown function (DUF2631)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.1   4.3e-17   2.6e-13      29      66 .]      11      48 ..       7      48 .. 0.94

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 4.3e-17
     DUF2631 29 spkttriaGlisvlallamliGnhqGhvedifLigfAa 66
                ++k+ ri +++s+lallaml Gnh+G+vedi+L+g+A+
  KIR65564.1 11 HRKAGRIGAVVSALALLAMLCGNHEGRVEDIWLVGLAV 48
                68999*******************************96 PP

>> SdpI  SdpI/YhfL protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     8e-06     0.048      17      62 ..       2      55 ..       1      57 [. 0.68

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8e-06
        SdpI 17 kseetWrkahrfagklwiiaGlilllla........lgavvlvllvlvlllviv 62
                 s +  + +hr ag++  +++ + ll+         ++ ++lv l+++ll+++v
  KIR65564.1  2 TSPDQHKPGHRKAGRIGAVVSALALLAMlcgnhegrVEDIWLVGLAVLLLAIVV 55
                566666778*****98877776655555677***99555666666666666655 PP

>> MLTD_N  MltD lipid attachment motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   3.4e-05       0.2       2      31 ..       3      32 ..       2      32 .. 0.96
   2 ?   -2.3   1.4      0.88   5.2e+03      22      31 ..      47      56 ..      46      56 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.4e-05
      MLTD_N  2 SpdyrkpsvkdALtRavqisalaaaalLaG 31
                Spd  kp + +A+   + +sala++a L G
  KIR65564.1  3 SPDQHKPGHRKAGRIGAVVSALALLAMLCG 32
                89*************************988 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.88
      MLTD_N 22 alaaaalLaG 31
                a++++a  +G
  KIR65564.1 47 AVLLLAIVVG 56
                5777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 516.24
//
Query:       KIR65565.1  [L=520]
Description: (2Fe-2S)-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-08   34.3   0.1    3.5e-08   33.3   0.1    1.4  1  Rieske          Rieske [2Fe-2S] domain
      3e-06   27.2   0.0      5e-06   26.5   0.0    1.4  1  Lactamase_B_3   Beta-lactamase superfamily domain
    3.8e-05   23.3   0.1    6.6e-05   22.5   0.1    1.4  1  Lactamase_B_2   Beta-lactamase superfamily domain
  ------ inclusion threshold ------
      0.086   13.4   0.9        2.8    8.6   0.1    2.4  2  Complex1_LYR_1  Complex1_LYR-like


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.1   7.8e-12   3.5e-08      38      78 ..     461     502 ..     438     508 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 7.8e-12
                 EEESC-TTTT-BCGG.SEEETT.EEE-TTT--EEE.TTSBEEE CS
      Rieske  38 AlsdvCtHrgaplse.gkidekgvleCpcHgwayd.adGkvik 78 
                 +++ +C+H++a l++ g + e+ +l+C++Hgw++d ++G++++
  KIR65565.1 461 VVQRRCPHLKADLTRfGIV-EGDQLTCQLHGWKFDlPSGRCLT 502
                 6789***********9999.666*****************975 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.1e-09     5e-06       2      65 ..       3      80 ..       2     140 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.1e-09
  Lactamase_B_3  2 ltwlghnsflletagarilvDPfkanlgyeppa..............eeaDlvlisqaledHahletlkql.aenvkvl 65
                   +t  gh+s++++ta  +il+DP+  n  y +++               ++D + +s+ + dH++++ l+    ++++vl
     KIR65565.1  3 VTGTGHASMRIDTAAGSILCDPWV-NPAYFASWfpfpdnsqldwetlGDVDYLYVSHLHRDHFDAAHLRDFvSKDATVL 80
                   6668*******************5.44444444555666666667779********************99653444444 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   1.5e-08   6.6e-05       3      98 ..      20     120 ..      19     171 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.5e-08
                    EEES--TT...HHHHHTCGGS--S.SS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEE....HHHHHHCCTTCGHHHCHTTTTEEEEEE CS
  Lactamase_B_2   3 iLiDagpd...lrqqalralqPve.lrdelppidaVllthaHyDHlaglltlrelrpkklplyap....kgvlavleanfvylaleeepavnvhel 90 
                    iL+D++ +   ++    +   + +  +++l ++d + ++h H DH+ ++ +lr +  k+++++ p     ++ ++l+a +   +l  + +++v+el
     KIR65565.1  20 ILCDPWVNpayFA-SWFPFPDNSQlDWETLGDVDYLYVSHLHRDHF-DAAHLRDFVSKDATVLLPefptSEMEDELRALGFTKFLRAP-NEQVVEL 112
                    8999999988533.335555566679********************.9******8888877766634347888888888777766666.9999999 PP

                    -TTSEEEE CS
  Lactamase_B_2  91 dwgesfel 98 
                    d g ++ +
     KIR65565.1 113 DGGLRIMI 120
                    87766666 PP

>> Complex1_LYR_1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.036   1.6e+02      13      46 ..     294     327 ..     291     337 .. 0.80
   2 ?    8.6   0.1   0.00063       2.8      16      72 ..     366     428 ..     363     447 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.036
  Complex1_LYR_1  13 aarrfPlrsrreivaeevraafrhplndslttke 46 
                     aa+   +r+r+  v e  +a +rhp  d l   +
      KIR65565.1 294 AAHLEEMRERKRGVIEAEKASWRHPEVDVLAGMK 327
                     666667899999999***********99997655 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00063
  Complex1_LYR_1  16 rfPlrsrreivaeevraafrh..plndsltt.kevdyk..lllgw.eraaaiqtyaenmywfl 72 
                      fP+++ r    e+vr  fr    l + l +  evd +  l+l     aa i  y e +y f+
      KIR65565.1 366 DFPGKEVRPYADEKVRYRFRTerALVEHLLHiGEVDWVnsLFLSCrFSAARIGQYNEFVYAFF 428
                     59*****************952256666665155665422555541567889********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 3282.43
//
Query:       KIR65566.1  [L=230]
Description: hypothetical protein TK50_09255 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-25   87.6   3.7    5.7e-25   87.6   3.7    2.1  2  DUF1211          Protein of unknown function (DUF1211)


Domain annotation for each model (and alignments):
>> DUF1211  Protein of unknown function (DUF1211)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   3.7   3.2e-29   5.7e-25       1      85 []      25     115 ..      25     115 .. 0.91
   2 ?   -0.1   0.1     0.074   1.3e+03      41      50 ..     185     194 ..     166     213 .. 0.77

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 3.2e-29
                 HHHHHHHHHHHHHHHHHHHHS.-.--....HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTH CS
     DUF1211   1 RleafsDavfAIaiTLlvlei.k.vp....eeellaallellpsllayllsFlvvasfWlnhhrlfrrikkvderllwlnllllllivllP 85 
                 R+eafsDav+AI++TL+++e+ + +p      +l+ al++++ps+lay+++F++v+++Wl+hh+++r++ +vd+ ll+lnlllll+++ +P
  KIR65566.1  25 RVEAFSDAVIAIVLTLMAVELlQfAPqnptGPDLAGALFHEWPSYLAYVITFAIVGQVWLTHHNMWRYVVRVDQLLLVLNLLLLLFVAAIP 115
                 99******************9742345556445788888*************************************************999 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.074
                 HHHHHHHHHH CS
     DUF1211  41 ayllsFlvva 50 
                  yl++F+vv+
  KIR65566.1 185 LYLVAFAVVF 194
                 6777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1569.02
//
Query:       KIR65567.1  [L=521]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-28   99.2   0.0    4.7e-28   98.2   0.0    1.5  1  AAA              ATPase family associated with various cellul
    1.4e-06   28.8   3.8    0.00013   22.4   0.0    3.3  2  AAA_16           AAA ATPase domain
    0.00086   19.5   0.9     0.0081   16.3   0.0    2.5  2  AAA_33           AAA domain
     0.0019   18.0   0.0      0.003   17.4   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0021   18.4   0.2        0.4   10.9   0.1    3.6  3  AAA_22           AAA domain
  ------ inclusion threshold ------
       0.01   15.9   0.1       0.07   13.1   0.1    2.6  2  AAA_5            AAA domain (dynein-related subfamily)
      0.041   14.0   0.1       0.41   10.8   0.1    2.6  2  Cas_Cas2CT1978   CRISPR-associated protein (Cas_Cas2CT1978)
      0.047   13.8   0.0        0.2   11.8   0.0    1.9  2  AAA_2            AAA domain (Cdc48 subfamily)
      0.057   12.7   0.0       0.13   11.6   0.0    1.5  1  Zeta_toxin       Zeta toxin
      0.067   12.3   0.0       0.19   10.9   0.0    1.9  2  DUF815           Protein of unknown function (DUF815)


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.0   2.6e-31   4.7e-28       1     131 [.     272     398 ..     272     399 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 2.6e-31
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 vll+G pG+GK+ +akava ++ +++++++ +++l +yvg+se ++re ++ a + a p++l+iDEi++    +  +++++++r+v q+l  l++ ++ 
  KIR65567.1 272 VLLVGVPGCGKSRCAKAVAAQWRMPLYRLDFATILGMYVGQSETRLREALEMADRTA-PCVLWIDEIEKGLAGQ-YDSTGVSRRLVGQFLYWLQESRS- 367
                 79******************************************************9.***********98888.7999*****************99. PP

                 SSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallr.gRfdrkieie 131
                   +v+v++++n++++l+p+llr gRfd+ ++++
  KIR65567.1 368 --RVFVVATSNDVRSLPPELLRkGRFDELFFVD 398
                 ..7*************************99986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.4     0.027        48      75     167 ..      29     125 ..       4     128 .. 0.67
   2 !   22.4   0.0   7.5e-08   0.00013       2     106 ..     249     342 ..     248     468 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.027
      AAA_16  75 alareellrqlldeaesaeleawrekleealaavpelagaea.srllellkrllallsrderplvlvlDdlqwadeaslql.laaLlrlles..kpl 167
                  l + +llr+++  a+ a l+ w ++  + l++ +  a  ++ ++l +++  ++a+lsr+++ ++++++  +   +++++  +a+L+rl+++  +++
  KIR65567.1  29 PLRAVRLLREVAGSARRAGLPFWLHTRAAGLRDLRTNAQVQEeRSLVAAMDFAAAQLSRRAQATIVFVEPDDLTADSPATRhIAELARLADArsGSI 125
                 455556777777777777777777766666665555555555477777777777999999999****987776666666666788888888742244 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 7.5e-08
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd....ggiflrgkcdqlesaipysalaqalareellrqlldeaesaelea 96 
                 +  R++++ +L+++ e+  ++ p+ vll+G +G+GKs+ +++++ +++      +       +        + +++ + ++ +l ++l+ ++++a    
  KIR65567.1 249 WLRRKHQV-MLADLSETRLRP-PRGVLLVGVPGCGKSRCAKAVAAQWRMPlyrlD-------FATI-----LGMYVGQSET-RLREALEMADRTAPCVL 332
                 56777787.888887755544.69********************98886633221.......2222.....2344444433.56666666666666666 PP

      AAA_16  97 wrekleeala 106
                 w +++e+ la
  KIR65567.1 333 WIDEIEKGLA 342
                 6666666555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.3      0.57     1e+03      58     109 ..      35     101 ..      25     110 .. 0.56
   2 !   16.3   0.0   4.5e-06    0.0081       2     104 ..     272     372 ..     272     381 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.57
      AAA_33  58 ilnelarkalsagrnvil.........datnlsr.rer...arflklarrlgvp..vrivvvetdee 109
                  l+e+a +a++ag ++ l           tn++  +er   a+++ +a +l+ +   +iv+ve+d+ 
  KIR65567.1  35 LLREVAGSARRAGLPFWLhtraaglrdLRTNAQVqEERslvAAMDFAAAQLSRRaqATIVFVEPDDL 101
                 5666666666666666665542222222335554355555555555555555333267777777765 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 4.5e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrrerarflklarrlgvp 98 
                 vllvG+pG+GKs  a+ ++++     ++l+  t++ +++g+ ++++++  + +dr+  ++  l  +  ++g +   d+t +srr   +fl ++++  ++
  KIR65567.1 272 VLLVGVPGCGKSRCAKAVAAQWRmpLYRLDFATILGMYVGQSETRLREALEMADRTAPCV--LWIDEIEKGLAGQYDSTGVSRRLVGQFLYWLQESRSR 368
                 799****************99887788888888999999888888888888888877776..4445567777777777777777777777777744433 PP

      AAA_33  99 vrivvv 104
                   + vv
  KIR65567.1 369 --VFVV 372
                 ..3333 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.7e-06     0.003       4      80 ..     275     346 ..     272     354 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.7e-06
  Viral_helicase1   4 hGvpGcGKStlirkllrtsliltvnrptaelltegk.....pklpnlsvrtvdsflmalvkstkgkililDEylllhaGyil 80 
                       GvpGcGKS++ + ++ +       r    l++  +     ++++++++r  ++++ma+       +l++DE+ ++ aG+ +
       KIR65567.1 275 VGVPGCGKSRCAKAVAAQ------WR--MPLYRLDFatilgMYVGQSETRLREALEMADRTA--PCVLWIDEIEKGLAGQYD 346
                      5***************88......22..3444444445667****************99876..56*******999888765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.42   7.5e+02      74     128 ..      73     128 ..      35     135 .. 0.72
   2 !   10.9   0.1   0.00023       0.4       8      28 ..     272     292 ..     265     372 .. 0.85
   3 ?   -1.8   0.0         2   3.5e+03      38      61 ..     390     413 ..     353     427 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.42
      AAA_22  74 sseellealeqalraravielliiDEaqhlr..s..eealeeLrsllnlsrkgvqliLv 128
                 s+ + ++  + +l++ra  + ++  E + l+  s   +++ eL +l++    + +++Lv
  KIR65567.1  73 SLVAAMDFAAAQLSRRAQ-ATIVFVEPDDLTadSpaTRHIAELARLAD--ARSGSIVLV 128
                 555556555566666666.78888888888665367899999999999..888888877 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00023
      AAA_22   8 lvvtGesGtGKTtllrrlleq 28 
                 ++++G +G+GK+++++ ++ q
  KIR65567.1 272 VLLVGVPGCGKSRCAKAVAAQ 292
                 689**************9987 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2
      AAA_22  38 erpevvfvtlpsstsskdllrell 61 
                 + +e++fv+lp +t+++++ r   
  KIR65567.1 390 RFDELFFVDLPDDTDRAEIIRLYY 413
                 446777899999998888876555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.9e-05      0.07       1      22 [.     271     292 ..     271     342 .. 0.85
   2 ?   -2.9   0.0       3.5   6.2e+03     113     129 ..     368     380 ..     351     387 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.9e-05
                 EEEEE--SSSSHHHHHHHGGGG CS
       AAA_5   1 dvlLvGppGtgKselaerlaaa 22 
                 +vlLvG pG+gKs+ a+ +aa 
  KIR65567.1 271 GVLLVGVPGCGKSRCAKAVAAQ 292
                 59**************999875 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.5
                 .-EEEEEESS--.-TT- CS
       AAA_5 113 rfrviatanpldrslne 129
                 r+ v+at+n+++    +
  KIR65567.1 368 RVFVVATSNDVR----S 380
                 377899999887....3 PP

>> Cas_Cas2CT1978  CRISPR-associated protein (Cas_Cas2CT1978)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.2   2.1e+03      27      41 ..     307     321 ..     288     325 .. 0.89
   2 ?   10.8   0.1   0.00023      0.41       9      39 ..     350     380 ..     347     390 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.2
                     TEEEEEE-HHHHHHH CS
  Cas_Cas2CT1978  27 gVyvgrvsarVrekl 41 
                     g yvg+ ++r re l
      KIR65567.1 307 GMYVGQSETRLREAL 321
                     89*********9976 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00023
                     --HHHHHHHHHHSEEEETTEEEEEE-HHHHH CS
  Cas_Cas2CT1978   9 vparlRGeLtrwllEvragVyvgrvsarVre 39 
                     v++rl G+   wl E r+ V+v   s+ Vr+
      KIR65567.1 350 VSRRLVGQFLYWLQESRSRVFVVATSNDVRS 380
                     8899*************************97 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.2   2.1e+03      45      74 ..      67      96 ..      55     100 .. 0.82
   2 ?   11.8   0.0   0.00011       0.2       6     100 ..     272     360 ..     267     367 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.2
                -----THHHHHHHHHTTT-HHHHTTSEEEE CS
       AAA_2 45 eeeevehlvsrligappgyvgaeegGivll 74
                + +e ++lv+    a+    ++++  iv++
  KIR65567.1 67 QVQEERSLVAAMDFAAAQLSRRAQATIVFV 96
                445679999999999*************97 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00011
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS...EEEEETGGG-------------HHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG...ivllDEidKihpkessgadvSregVqrdLL 100
                 +ll+g  g+Gk+  aka+a   ++    +l r+d  ++l       +v + +       + +++    ++ +DEi+K  + +  +  vSr  V + L+
  KIR65567.1 272 VLLVGVPGCGKSRCAKAVAAQWRM----PLYRLDFATILG-----MYVGQSETRLREALEMADRTapcVLWIDEIEKGLAGQYDSTGVSRRLVGQFLY 360
                 6889999***************99....**********99.....44444444444444444444488*********999899999999999988886 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.1e-05      0.13      14      39 ..     267     292 ..     256     301 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.1e-05
  Zeta_toxin  14 erPklillgGqpGAGKselaellkde 39 
                 + P  +ll+G pG+GKs+ a++++++
  KIR65567.1 267 RPPRGVLLVGVPGCGKSRCAKAVAAQ 292
                 67899****************99876 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.3   4.2e+03      92     117 ..      75     102 ..      67     108 .. 0.72
   2 ?   10.9   0.0    0.0001      0.19      49      80 ..     265     296 ..     216     387 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.3
      DUF815  92 lkelpklvellrerperfilfv..DDLs 117
                 ++ ++   ++l++r++  i+fv  DDL+
  KIR65567.1  75 VAAMDFAAAQLSRRAQATIVFVepDDLT 102
                 5556666778889999999998667886 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0001
      DUF815  49 eglpannvLLwGarGtGKSslvkallneyaee 80 
                 + +p + vLL+G  G+GKS + ka+ ++ +  
  KIR65567.1 265 RLRPPRGVLLVGVPGCGKSRCAKAVAAQWRMP 296
                 5567788******************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3578.13
//
Query:       KIR65568.1  [L=187]
Description: hypothetical protein TK50_09270 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1512.11
//
Query:       KIR65569.1  [L=591]
Description: hypothetical protein TK50_09275 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4001.12
//
Query:       KIR65570.1  [L=660]
Description: hypothetical protein TK50_09290 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-19   70.0   0.0    4.2e-19   69.5   0.0    1.1  1  Peptidase_C14  Caspase domain


Domain annotation for each model (and alignments):
>> Peptidase_C14  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   2.3e-23   4.2e-19       3     238 ..       7     250 ..       6     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 2.3e-23
                    EEEEECSTTSSTCC-STTHHHHHHHHHHHHHHHTTEEEEE....EEGGEES-CHHHHHHHHHHHHCHSGGTTESEEEEEEESEEE..T........ CS
  Peptidase_C14   3 AliIginnYpgtkaeLrGcanDaermaklLvkrlgFeven....ililtddptgknirkalkwlvksadhspgDslvvhysGHGt..rvpae.... 88 
                    Al++gi+ Y+  + +L+Gc nD+ + a++L  r   +        ++l+++ t++ + + l++   +a   pgD++++++sGHG    vp +    
     KIR65570.1   7 ALLVGIDRYRAVT-PLQGCGNDVAQAAEFLRGRVPAQ--RgpaiEVLLHEQATREAVVDGLRTHLGQAG--PGDTALFWFSGHGSraAVPPQlwhl 97 
                    9*********778.****************4443333..234768899*****************8887..**************44344449999 PP

                    ........EEECTTC..SSEEEHHHHHHTTSTTTHGGGTTS-EEEEEESES.SSBCBEEEEEEES-SSSHCCCHCHHHHHHCSHHCEEECTTT.SE CS
  Peptidase_C14  89 ........civpvdv..nsliqdddirdlfggdklpslagkpktiiidaCr.gglldkgiekdtsptnkfeedssskekkpekqslsklpsea.dv 172
                             ++ ++   + +   d+++ l+ g    +++  + ++++d+C+  g+  ++  + ++ +        ++++  + q ++ +  +  ++
     KIR65570.1  98 epgeklqtLLCHDSRhgGVPDLYDKELLLLLGAVAATGC--HVVAVVDSCHsHGATRNPQRSVADLPTA------PAVEALLPQLRQAAARPPvEY 185
                    999999955555555775555557777777799999999..**********777776666666666666......777777777777777766799 PP

                    EEEESSSTTBSCEEETTTEE...HHHHHHHHHHHHHTTTSBHHHHHHHHHHHHCCTTTCTTSBEEEEEE CS
  Peptidase_C14 173 lllsgcqddqtSadgsengs...aftqalqkvleekggkislkellnkvrkrlkslkkkngykqrPgls 238
                    ++l +c   +t+ ++  +g     f++ l+ +++  g   +++ell+++r +++    + + +q+P+l 
     KIR65570.1 186 VSLAACRSFETATEDWLDGRwhgLFSWGLLAAMRRLGPAATYRELLTAARCEVE----QYSSRQVPQLD 250
                    ********************9999*****************************3....45589***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 5016.43
//
Query:       KIR65571.1  [L=541]
Description: FAD-dependent oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-10   41.2   7.7      3e-06   26.8   0.0    2.6  3  Amino_oxidase   Flavin containing amine oxidoreductase
    9.9e-10   38.5   0.1    4.1e-09   36.5   0.1    2.1  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    5.2e-08   32.9   8.9    0.00054   19.6   3.5    2.6  3  DAO             FAD dependent oxidoreductase
    4.3e-07   29.4   5.9    4.7e-05   22.7   4.6    2.2  2  FAD_binding_2   FAD binding domain
    1.9e-06   27.5   2.1    2.3e-05   23.9   1.2    2.2  2  FAD_oxidored    FAD dependent oxidoreductase
    2.9e-05   23.4   0.2    5.1e-05   22.6   0.2    1.3  1  Thi4            Thi4 family
    0.00016   21.1   2.9    0.00029   20.2   2.9    1.4  1  FAD_binding_3   FAD binding domain
    0.00018   20.9   0.2     0.0032   16.7   0.3    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      0.002   18.6   0.7        1.3    9.6   1.8    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0078   15.0   1.2      0.087   11.5   2.8    1.8  2  HI0933_like     HI0933-like protein
  ------ inclusion threshold ------
       0.01   14.7   0.7       0.17   10.7   0.2    2.1  2  Trp_halogenase  Tryptophan halogenase
       0.01   14.9   0.7      0.025   13.7   0.8    1.5  2  GIDA            Glucose inhibited division protein A
      0.027   13.5   5.3        2.1    7.3   0.1    2.2  2  Lycopene_cycl   Lycopene cyclase protein
       0.14   11.7   0.3       0.22   11.1   0.3    1.2  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.29   10.4   1.4        0.4    9.9   1.4    1.2  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   6.1e-07   0.00073       3      33 ..      31      61 ..      31      74 .. 0.95
   2 !   26.8   0.0   2.5e-09     3e-06     198     278 ..     240     319 ..     185     345 .. 0.80
   3 ?   -4.8   1.3       9.8   1.2e+04     418     452 .]     507     537 ..     502     537 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.1e-07
                   HHHHHHHHHHTTEEEEEEESSSSSBTTS-EE CS
  Amino_oxidase  3 GLaaArqLlsaGfdVtvlEardrvGGRirtv 33
                   GL+ A  L++aG+dV+vlEa + +GG  rt+
     KIR65571.1 31 GLVSAILLARAGLDVLVLEAAGVIGGATRTE 61
                   9*************************88876 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 2.5e-09
                    HTSCCCEE.TTHTHHHHHHHHH..TTTTEEEETSEEEEEEEEETTC.EEEEETTSTEEEESEEEE-S-HHHHHSSEEESCC.SHHH CS
  Amino_oxidase 198 fggslllp.rgGlsqlpealae..elrgldirlntrVkeikregdg.vtvtledgevveaDaVvvTvplgvlkailfsPpl.pdek 278
                     +++++++ +gG++++ +++a+  ++ g +i+++++V+ i+ +g+   +vtl dg++v a+ V+ +++++ l        l pd +
     KIR65571.1 240 GSDGTWMIaEGGMGTVSRTFADaaRAAGATILTDAPVTAITLDGGAaSGVTLADGRHVAARVVLGACDPYRLM------DLlPDGA 319
                    4455555569********************************5555599999*****************9998......4444433 PP

  == domain 3  score: -4.8 bits;  conditional E-value: 9.8
                    CSTTEEE.SGGGCTTTTTS.HHHHHHHHHHHHHHHH CS
  Amino_oxidase 418 gdprlffAGehtsreypgt.vegAilSGlraAaril 452
                    g+++++ AG++ +  +p++ v gA  +G +aA+ril
     KIR65571.1 507 GVDGVY-AGSAGC--HPAGsVIGA--AGHNAARRIL 537
                    666777.788866..898889999..5899999986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1   3.4e-12   4.1e-09       1      49 [.      24      76 ..      24      85 .. 0.92
   2 ?   -3.2   0.0         9   1.1e+04      30      46 ..     323     339 ..     322     344 .. 0.77

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 3.4e-12
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE....TTCEECTS- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev....pgvrvdyga 49
                   IvG+G  Glv A lLa+ag+dvl+le++  +GG  ++++     pg r+ +g 
     KIR65571.1 24 IVGSGHNGLVSAILLARAGLDVLVLEAAGVIGGATRTENPfpkvPGLRHSTGS 76
                   9*************************************777777889998885 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 9
                    SSSGGG-EECETTCEEC CS
  NAD_binding_8  30 rlGGraasyevpgvrvd 46 
                     lG r+a +++pg +++
     KIR65571.1 323 ELGARMAAVRRPGTTLK 339
                    58999999999996554 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   3.5   4.5e-07   0.00054       1      37 [.      21      58 ..      21      62 .. 0.95
   2 ?   -2.5   0.0       2.5     3e+03     246     298 ..      95     158 ..      76     187 .. 0.59
   3 !   15.9   0.1   6.1e-06    0.0073     150     298 ..     257     430 ..     241     533 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.5e-07
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGG CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaS 37
                dvvi+G+G  Gl  A  Lar+g  V++le++  +g ga+
  KIR65571.1 21 DVVIVGSGHNGLVSAILLARAGldVLVLEAAGVIG-GAT 58
                9******************************9999.887 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.5
                 EEETTTTEEEEEETTS....EEEEEESSE........EETTCSSTSCSHHHHHHHHHHHHHHSGG CS
         DAO 246 tdddgrgvyvtprkdg....rvlvGgtad........eesgdddpevdeedidellealrklfPq 298
                 ++ + + +y++p+++g     +l+G++ +        e++++ d+++d++  +el +   +l P+
  KIR65571.1  95 PVLRRDPHYFLPTPGGpgspYLLMGSD-TaatrrqlaEFFSPADVAADDAMQAELAQLRDDLAPA 158
                 556666677777765544333555554.3477777775555555566666666665555555555 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 6.1e-06
                 HHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHHHH.HTT..CTT....TSEEEEEEEEEEEEEECCTHSTGSGCS CS
         DAO 150 aalaraaealGveilegtevtgleeedgkvwgverttp.gendaadavVnaaGawsdll.gll..kel....dlpispvrgqvlvlkplseklvspaai 240
                 + +a+aa+a+G++il+ ++vt++  ++g ++gv  t + g+ +aa+ v  a+ ++   l +ll  + l      ++ +vr    +l ++++    +  +
  KIR65571.1 257 RTFADAARAAGATILTDAPVTAITLDGGAASGV--TLAdGRHVAARVVLGACDPY--RLmDLLpdGALpaelGARMAAVRRPGTTL-KVNL----ALTG 346
                 5689*******************99999999**..44448766779999999999..34344432222221233334444444444.2222....2234 PP

                 EEEEE......EEETTTTEEEEEETTSEEEEEESSE.......................EETTCSS..TSCSHHHHHHHHHHHHHHSGG CS
         DAO 241 lpvpe......tdddgrgvyvtprkdgrvlvGgtad.......................eesgddd..pevdeedidellealrklfPq 298
                 lp +       ++  g  ++++p      lvGg ++                         +   +  ++vd+   de  ++ ++lf q
  KIR65571.1 347 LPRFSclppgaPSPFGSTIHLLPG--SASLVGGGGEppmaalramwadvqagrlpaeptI-EW--YlhTTVDPSLQDEAGHHSSALFVQ 430
                 444445555545555555666663..2345555555567776666666666666554321.11..122455555555555555555555 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   4.6   3.9e-08   4.7e-05       1      38 [.      21      58 ..      21      60 .. 0.97
   2 !    6.0   0.0    0.0043       5.2     142     189 ..     254     298 ..     169     323 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3.9e-08
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggat 38
                   Dv+++GsG  GL++A+ +a+aGl+v+v+e +++ ggat
     KIR65571.1 21 DVVIVGSGHNGLVSAILLARAGLDVLVLEAAGVIGGAT 58
                   9**********************************988 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0043
                    HHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEE CS
  FAD_binding_2 142 allarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevr 189
                    ++  +++++ar+ag ++++ +++++++ ++g ++G++++   +gr v+
     KIR65571.1 254 TVSRTFADAARAAGATILTDAPVTAITLDGGAASGVTLA---DGRHVA 298
                    56678999999999**********************999...565553 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   1.2     2e-08   2.3e-05       1      38 [.      21      58 ..      21      67 .. 0.96
   2 ?    1.9   0.0     0.092   1.1e+02      90     142 ..     256     305 ..     248     315 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2e-08
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGll 38
                  Dvv+vG+g  G++ Ai  araG  vl++e  gv+GG +
    KIR65571.1 21 DVVIVGSGHNGLVSAILLARAGLDVLVLEAAGVIGGAT 58
                  9***********************************86 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.092
  FAD_oxidored  90 kavleemlaeagvtvllntrlvevekegkriesvtveskegrktirAkvfiDA 142
                    +++ +  + ag t+l+++ +++++ +g+   +vt+++   +++++A+v++ A
    KIR65571.1 256 SRTFADAARAAGATILTDAPVTAITLDGGAASGVTLAD---GRHVAARVVLGA 305
                   5788999999*****************999******87...889999998766 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.2   4.3e-08   5.1e-05      17      57 ..      19      58 ..       7      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4.3e-08
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailersvspGGGa 57
                 +DvvivG+G  GL +a  la++ +l v++le+   +GG +
  KIR65571.1 19 RADVVIVGSGHNGLVSAILLARA-GLDVLVLEAAGVIGGAT 58
                68*********************.*********99999975 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   2.9   2.4e-07   0.00029       2      32 ..      20      50 ..      19      59 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.4e-07
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   +dV+IVG+G  Gl++a lL++aG +v+++e 
     KIR65571.1 20 ADVVIVGSGHNGLVSAILLARAGLDVLVLEA 50
                   79***************************96 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.3   2.7e-06    0.0032       2      31 ..      21      54 ..      20      73 .. 0.82
   2 ?    1.5   0.0      0.12   1.4e+02     185     232 ..     255     303 ..     250     306 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.7e-06
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE....T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve....l 31
                 dvv++G+G+ Gl  a+ la+ag++v+++e     
   KIR65571.1 21 DVVIVGSGHNGLVSAILLARAGLDVLVLEaagvI 54
                 8**************************9844442 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.12
                  HHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCEEEESEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  Pyr_redox_2 185 lsaaleealekeGvevklgtsvkeidgngekle.vvledgeeidadlvv 232
                  +s++ ++a ++ G ++ + + v++i+ +g  ++ v+l dg+ ++a+ v+
   KIR65571.1 255 VSRTFADAARAAGATILTDAPVTAITLDGGAASgVTLADGRHVAARVVL 303
                  67888999999****************9996668********9999887 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   1.8    0.0011       1.3       2      34 ..      22      54 ..      21      61 .. 0.91
   2 ?    5.5   0.0     0.022        26      41      80 ..     254     293 ..     247     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkl 34
                vv+vG+G  gl  A  la+ g +V v+e++  +
  KIR65571.1 22 VVIVGSGHNGLVSAILLARAGLDVLVLEAAGVI 54
                8**************************998766 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEEET CS
   Pyr_redox  41 easkilqeklekngievllntkveeiegsedgvesvklkd 80 
                 ++s+ +++  ++ g ++l+++ v++i+ ++   ++v+l+d
  KIR65571.1 254 TVSRTFADAARAAGATILTDAPVTAITLDGGAASGVTLAD 293
                 578899999******************9998799999976 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   2.8   7.3e-05     0.087       2      36 ..      21      55 ..      20      57 .. 0.93
   2 ?   -1.1   0.0       0.5     6e+02     111     159 ..     255     303 ..     251     306 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.3e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 dv+++G G  Gl  Ai +a++g +Vl+le+a  +g
   KIR65571.1 21 DVVIVGSGHNGLVSAILLARAGLDVLVLEAAGVIG 55
                 8****************************987665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.5
                  HHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEE CS
  HI0933_like 111 ivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklv 159
                  + +++  ++++ag ++ ++  v++++ + + +  v++ ++++++a+ ++
   KIR65571.1 255 VSRTFADAARAAGATILTDAPVTAITLDGGAASGVTLADGRHVAARVVL 303
                  6678899999*****************9999999999767666665554 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00014      0.17       1      34 [.      21      51 ..      21      75 .. 0.92
   2 ?    2.3   0.0      0.05        60     157     204 ..     256     303 ..     252     307 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlvese 34
                    ++vivG G  G ++A++la+a+   l+v+++e++
      KIR65571.1 21 DVVIVGSGHNGLVSAILLARAG---LDVLVLEAA 51
                    69********************...99***9987 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.05
                     HHHHHHHHHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEE CS
  Trp_halogenase 157 akfLrrvaearGvtrvegkvvevqldedgrveslrledgreveadlfi 204
                      +   + a a+G t++ +  v++ + + g+ ++++l+dgr+v a+ ++
      KIR65571.1 256 SRTFADAARAAGATILTDAPVTAITLDGGAASGVTLADGRHVAARVVL 303
                     566788999**********************************99875 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.8   2.1e-05     0.025       1      28 [.      21      48 ..      21      64 .. 0.87
   2 ?   -3.3   0.0       2.9   3.5e+03     117     147 ..     275     305 ..     270     310 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.1e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi 28
                dv+++G Gh G+  A+ +ar+G++vl +
  KIR65571.1 21 DVVIVGSGHNGLVSAILLARAGLDVLVL 48
                79***********************987 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.9
                 -EEEEEECTTEEEEEEETTS-EEEECEEEE- CS
        GIDA 117 eveeliveekkvkgvvtedgetikakavvia 147
                  v+ + ++ +  +gv+++dg+++ a++v  a
  KIR65571.1 275 PVTAITLDGGAASGVTLADGRHVAARVVLGA 305
                 5788888889999**********99988766 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   2.0    0.0019       2.2       1      33 [.      21      51 ..      21      60 .. 0.92
   2 ?    7.3   0.1    0.0017       2.1     100     138 ..     267     305 ..     255     313 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0019
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieas 33
                   Dvv++G+G  gl  A  l  a++gl v+++ea+
     KIR65571.1 21 DVVIVGSGHNGLVSAILL--ARAGLDVLVLEAA 51
                   9*****************..**********986 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0017
  Lycopene_cycl 100 ngvklleakvesveeeeageslvvleggrkirarlvvda 138
                    ++ +l++a v++++ +  + s v+l++gr++ ar+v+ a
     KIR65571.1 267 GATILTDAPVTAITLDGGAASGVTLADGRHVAARVVLGA 305
                    567899******************************977 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   0.00018      0.22       3      29 ..      22      48 ..      20      52 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00018
                    EEEE--STTHHHHHHHHHHCTSEEEEE CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigv 29
                    ++++G+G+ Glv+a++la++g +v+++
      KIR65571.1 22 VVIVGSGHNGLVSAILLARAGLDVLVL 48
                    89**********************986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.4   0.00034       0.4       1      30 [.      23      51 ..      23      60 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00034
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 +I+G G  Gl +ai l +agl d+l+lE +
   KIR65571.1 23 VIVGSGHNGLVSAILLARAGL-DVLVLEAA 51
                 7********************.8*****86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 4395.47
//
Query:       KIR65572.1  [L=746]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-83  278.5  42.4      1e-55  189.0  17.6    2.5  2  MMPL             MMPL family
    1.3e-07   29.7   9.9    1.3e-07   29.7   9.9    1.9  2  ACR_tran         AcrB/AcrD/AcrF family
  ------ inclusion threshold ------
       0.48   10.3  14.4       0.15   11.9   2.9    3.2  2  Sterol-sensing   Sterol-sensing domain of SREBP cleavage-acti
       0.98    8.1   3.5        1.7    7.3   3.5    1.3  1  Clostridium_P47  Clostridium P-47 protein
        8.7    4.3  12.9       0.22    9.5   5.2    1.9  2  Patched          Patched family


Domain annotation for each model (and alignments):
>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.0  17.6   2.8e-59     1e-55       4     332 ..      45     374 ..      42     375 .. 0.89
   2 !   94.9  16.9   1.2e-30   4.4e-27     100     319 ..     478     693 ..     428     710 .. 0.86

  Alignments for each domain:
  == domain 1  score: 189.0 bits;  conditional E-value: 2.8e-59
        MMPL   4 padaesvkamdrleaafpeeadsdkiivvvlaegdealgsaaaeaavdelvdelkkdtkhvgevsdflsdpdvaaafvSkDgkaaralvtlegdpgste 102
                 ++  es+++ +r++a++    +++++iv++   ++ ++ + a +  v ++v++l ++ +++++v  f   +  a  +vS D +a++alv+l+g  ++++
  KIR65572.1  45 DPASESSRTAERITAELGR--QGADVIVLWS-SDTATVDQPAFRDPVAATVAAL-RQRPEIDSVTTF--YDAPAPHLVSTDRRATYALVQLDGV-DEDA 136
                 6778899999999998887..6677777777.777777777*************.66677*******..3446899****************85.6666 PP

        MMPL 103 adesvaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelst 201
                  +e+++a+r a + a+   gl+ e++G  a  +  ++ +++d++ +e++++ v+lv+L+++++ lvaa+ pll+ ++ +l a+  v++  l+ + ++s 
  KIR65572.1 137 RAEAFDAVRPAFD-AP---GLRTELGGAVAFQRYANEQTTEDITRAELLSMPVLLVLLVLIFGGLVAATTPLLVGGLAILGAF--VAVRLLNMVTDMSI 229
                 6688888887765.44...8*******999999***************************************97776666555..5577888899**** PP

        MMPL 202 fvlgllvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTllPAllv 300
                 f+++  ++++++ ++DYal++vsR+reelaag+d++eav r++a++g++v+ +Gltva+am++L+v   p+l+++G+    +vlv++l++lT+lPAll+
  KIR65572.1 230 FAINVITLIGLGMAVDYALFVVSRFREELAAGRDTAEAVRRTMATAGRTVLVSGLTVALAMASLLVFPQPFLRSMGLGGMAAVLVAMLAALTVLPALLA 328
                 *************************************************************************************************** PP

        MMPL 301 llGraa.la.............kprrkrkkrwWrrlgrlvvrrPlp 332
                 +lGr++  +             +p ++ ++  W r++r v rrP+p
  KIR65572.1 329 VLGRRVdAVrvpvpwrrgagrgRPAHADTSGAWARIARSVMRRPVP 374
                 *****8655999999998888888888888**************98 PP

  == domain 2  score: 94.9 bits;  conditional E-value: 1.2e-30
        MMPL 100 steadesvaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalgl.vlilalllgl 197
                  ++a    +++   ++ +++++g++v v+G + + +dl d+    l  + ++ +   l++L+++++S+v ++  +l+ ++s++a++g+ v i+++ +  
  KIR65572.1 478 GDAA----RDLVGDLRALPAPDGARVLVGGRPGVDRDLLDSLGDRLPWMALLMAGATLLLLFLAFGSVVLPVKAVLMNLLSIGASFGVvVWIFQDGHLS 572
                 3333....333333445569********************************************************************9*****98877 PP

        MMPL 198 elstfv.........lgllvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvd 287
                 +l  f+         + l+ ++l++ +tDY ++L+sR ree ++  d  ++v+  +++tg+ +taa+l ++i ++g+++  + +++ +G+ + ++++vd
  KIR65572.1 573 GLLGFTstgfiepsnVILMLAVLFGLATDYEVFLLSRVREEWDRTGDNTASVAAGLQRTGRIITAAALLLVIVVAGFATGAMAYIKLIGIGMIVAIVVD 671
                 7655542222233336799999**********************99999************************************************** PP

        MMPL 288 vlivlTll.PAllvllGraalakprrkrkkrwW 319
                 + +v++ll PA + llGr+++           W
  KIR65572.1 672 ATLVRALLvPATMRLLGRWNW-----------W 693
                 *******************64...........4 PP

>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   9.9   3.7e-11   1.3e-07     336     489 ..     179     330 ..     164     392 .. 0.81
   2 ?  -11.3  11.0         5   1.8e+04     902    1015 ..     572     682 ..     516     687 .. 0.73

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.7e-11
                 HHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT.......--BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHH CS
    ACR_tran 336 tLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalg.......fslNlltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalks 427
                 +Ll   vL vl v++F + l a+  p+++  l++lg+f+++ +l+       f++N++tL+gL    G+ vD A  vv    ++l++ g +  ea++++
  KIR65572.1 179 ELLSMPVLLVLLVLIFGG-LVAATTPLLVGGLAILGAFVAVRLLNmvtdmsiFAINVITLIGL----GMAVDYALFVVSRFREELAA-GRDTAEAVRRT 271
                 566666888888889955.56666899999********9887765222333366777777776....779*****************.*********** PP

                 HHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH CS
    ACR_tran 428 mkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlvaltltPalcall 489
                 m + +++++ + l++    l +++l  +   + r+++l  + a+l+++l alt+ Pal a+l
  KIR65572.1 272 MATAGRTVLVSGLTV---ALAMASLLVFPQPFLRSMGLGGMAAVLVAMLAALTVLPALLAVL 330
                 *******99887765...5567777777889****************************998 PP

  == domain 2  score: -11.3 bits;  conditional E-value: 5
                  HHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHH CS
    ACR_tran  902 GallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeaileaakeRLrPiLMTalaailGvlPLalstgaGselqqplgivv 998 
                  ++ll+ + +g      ++  l +l+Gla    + l++ ++e++++ g   + a + a+++R   i+ Ta a +l ++   ++tga + + + +gi++
  KIR65572.1  572 SGLLGFTSTGFIEPSNVILMLAVLFGLATDYEVFLLSRVREEWDRTGD--NTASVAAGLQRTGRII-TAAALLLVIVVAGFATGAMAYI-KLIGIGM 664 
                  566666666654444445556788999999999999999999986666..7788888888887775.7878888777777777776655.4688888 PP

                  HHHHHH.HHHHHHHHHHH CS
    ACR_tran  999 lgGlvt.stvLtLllvPv 1015
                  +  +v+ +t+   llvP+
  KIR65572.1  665 IVAIVVdATLVRALLVPA 682 
                  877765367777777776 PP

>> Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.9   4.3e-05      0.15      32     143 ..     225     337 ..     198     342 .. 0.84
   2 ?    2.1   3.8     0.043   1.5e+02      38     124 ..     585     674 ..     539     684 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.3e-05
                     HHHHHHHHHHHHHHHHHHCHHCCHHCHHHHHHH.HTTTCHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH CS
  Sterol-sensing  32 ltltliilevlPflvlavgvdnifvlvkavqrt.srsldeseriaealgevgpsilltsltellalllgaltdvpavqeFclfaavavlvdFllq 125
                      ++++  ++v+  + l + vd  + +v  +++      d  e + +++ ++g  +l++ lt +la++  +++  p +++  l  + avlv  l  
      KIR65572.1 225 TDMSIFAINVITLIGLGMAVDYALFVVSRFREElAAGRDTAEAVRRTMATAGRTVLVSGLTVALAMASLLVFPQPFLRSMGLGGMAAVLVAMLAA 319
                     4678888999***********9988888887650555666*********************99999977799999******************** PP

                     HTHHHHHHHHHHHHHHCT CS
  Sterol-sensing 126 itfFvavLsldirreese 143
                     +t+  a+L++  rr+ + 
      KIR65572.1 320 LTVLPALLAVLGRRVDAV 337
                     *************98665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.043
                     HHHHHHHHHHHHCHH...CCHHCHHHHHHHHTTTCHHHHHHHHHHHHCCCCHHCCCHHHHHHH.HHHHCCHHHHHHHHHHHHHHHHHHHHH CS
  Sterol-sensing  38 ilevlPflvlavgvd...nifvlvkavqrtsrsldeseriaealgevgpsilltsltellall.lgaltdvpavqeFclfaavavlvdFll 124
                     +++v+  l+++ g+    ++f+l +  ++ +r+ d+   +a +l+++g  i++ +l  +++ + ++    +  ++   +  +va++vd  l
      KIR65572.1 585 PSNVILMLAVLFGLAtdyEVFLLSRVREEWDRTGDNTASVAAGLQRTGRIITAAALLLVIVVAgFA-TGAMAYIKLIGIGMIVAIVVDATL 674
                     455666666666653224699999999999999999**************9999998666655343.556777888888888888888766 PP

>> Clostridium_P47  Clostridium P-47 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.5   0.00047       1.7     357     410 ..     619     672 ..     609     683 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00047
  Clostridium_P47 357 qhrthvatwviitevilgvivavigsvagavggkvkslvdkiiiaiivaiiagi 410
                       ++  va++++ t  i+ + ++++  v+++  + +++ ++ i i +ivai++  
       KIR65572.1 619 DNTASVAAGLQRTGRIITAAALLLVIVVAGFATGAMAYIKLIGIGMIVAIVVDA 672
                      567889*************************9******************9744 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.2   6.3e-05      0.22     715     809 ..     232     330 ..     198     332 .. 0.88
   2 ?   -1.2   0.9      0.11   3.8e+02     254     278 ..     541     565 ..     536     567 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 6.3e-05
     Patched 715 itii..msiGfsvdlsaHiayafvrsekd..dakeRvvealealgwPvvqgalSTilgvlvLlfvdsymvqvFfktvvLvvvigllHgLlilPillslf 809
                 i++i  +  G +vd++  +  +f ++     d++e v++++++ g  v+ ++l   l++ +Ll+ +    +      +  v++ +l +L +lP ll+++
  KIR65572.1 232 INVItlIGLGMAVDYALFVVSRFREELAAgrDTAEAVRRTMATAGRTVLVSGLTVALAMASLLVFPQPFLRSMGLGGMAAVLVAMLAALTVLPALLAVL 330
                 44441156789************99876677***********************************8777777666677999**************976 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.11
     Patched 254 pilailgvlspvlAivsslGlllwl 278
                 ++l + +vl  +l+i +s+G+++w+
  KIR65572.1 541 VVLPVKAVLMNLLSIGASFGVVVWI 565
                 678899*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.49
# Mc/sec: 4567.85
//
Query:       KIR65573.1  [L=394]
Description: translocation protein TolB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-32  114.0   5.3    3.5e-12   46.3   0.0    4.7  4  DUF839    Bacterial protein of unknown function (DUF839)
      9e-08   31.9   0.1      9e-08   31.9   0.1    2.9  4  PD40      WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> DUF839  Bacterial protein of unknown function (DUF839)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00021       1.8       3      36 ..      45      78 ..      43      94 .. 0.82
   2 !   40.5   1.0   2.1e-14   1.9e-10     142     186 ..     108     156 ..      98     166 .. 0.71
   3 !   46.3   0.0   3.9e-16   3.5e-12     235     280 ..     168     210 ..     157     255 .. 0.81
   4 !   17.5   0.0     2e-07    0.0018     432     521 ..     303     371 ..     277     373 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00021
      DUF839  3 fgplaaklddlvavpegyeakvlvrwGdklfaga 36
                +g l a   + +++p+g++ +v++r+G++++ ++
  KIR65573.1 45 YGDLLAADANGIQLPAGFTSRVVARSGQRVAGTS 78
                556666677889*****************99876 PP

  == domain 2  score: 40.5 bits;  conditional E-value: 2.1e-14
      DUF839 142 aagsellktsad....aegvkilGTanNCagGtTpWGtyLtcEEnfngy 186
                 a g++ ++ +ad    + ++ + GT  NCagG TpWGt+L+cEE   g 
  KIR65573.1 108 AGGTSAVRFRADgsiaSAYRILGGTNLNCAGGATPWGTWLSCEEAPLGR 156
                 345566666665212144556779********************86665 PP

  == domain 3  score: 46.3 bits;  conditional E-value: 3.9e-16
      DUF839 235 pvkrtalGrfkHEaaavvveddkrvvvYlgdDerkeylYkFvsndr 280
                 +  rt +Grf HEaaa    d+ r+vvYl++De+++ +Y+Fv+   
  KIR65573.1 168 AEERTRMGRFTHEAAAC---DPDRGVVYLTEDEEDGCFYRFVPDTW 210
                 6789*************...**********************9865 PP

  == domain 4  score: 17.5 bits;  conditional E-value: 2e-07
      DUF839 432 gndlespDnlafdpaGrlwiatDgsgskdellgvtaeGkvynlarndGnnvltsdaargevkrfltepegsEvtGvtfsPdgktlfvnvq 521
                  + l  +Dn++ + +G+l +a+Dg + +      t+ G v  + r                     +  gsE+tG++fsPdg +l+ + q
  KIR65573.1 303 AAPLTGVDNITGTRSGDLYVAEDGGNMEI--NMITPTGVVTPFLRL-------------------LGQSGSELTGPAFSPDGSRLYFSSQ 371
                 66788899999999999999999998653..456777777777544...................5689****************99877 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       1.1     1e+04      16      20 ..      83      87 ..      83      87 .. 0.95
   2 ?   -2.1   0.1      0.45     4e+03      17      24 ..      93      99 ..      91     102 .. 0.75
   3 ?   -2.7   0.0      0.73   6.5e+03      18      24 ..     162     168 ..     162     168 .. 0.86
   4 !   31.9   0.1     1e-11     9e-08      10      32 ..     353     376 ..     344     379 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.1
                E-TTS CS
        PD40 16 fSPDG 20
                + PDG
  KIR65573.1 83 WAPDG 87
                99**9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.45
                -TTSSEEE CS
        PD40 17 SPDGkrla 24
                 PDG +++
  KIR65573.1 93 APDG-WIY 99
                5898.887 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.73
                 TTSSEEE CS
        PD40  18 PDGkrla 24 
                 PDG+r a
  KIR65573.1 162 PDGSRAA 168
                 9**9976 PP

  == domain 4  score: 31.9 bits;  conditional E-value: 1e-11
                 .EEEEEE-TTSSEEEEEEECT..T CS
        PD40  10 negaPsfSPDGkrlaFsSdRg.sG 32 
                 + ++P+fSPDG+rl+FsS+Rg sG
  KIR65573.1 353 ELTGPAFSPDGSRLYFSSQRGvSG 376
                 5689****************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2508.42
//
Query:       KIR65574.1  [L=1061]
Description: SWM_repeat domain-containing protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-11   44.2  14.4    1.4e-05   25.6   0.7    5.5  5  VCBS      Repeat domain in Vibrio, Colwellia, Bradyrhizobium 
     0.0099   16.0  25.5       0.18   11.9   0.2    5.3  5  FG-GAP    FG-GAP repeat


Domain annotation for each model (and alignments):
>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.9   1.7e+04       9      32 ..     221     249 ..     220     261 .. 0.68
   2 !    7.9   0.3   0.00052       4.7       1      31 [.     773     804 ..     734     829 .. 0.73
   3 !   25.6   0.7   1.5e-09   1.4e-05       4      61 .]     842     907 ..     840     907 .. 0.79
   4 !   11.4   0.3   4.1e-05      0.37      20      61 .]     912     956 ..     909     956 .. 0.69
   5 !    4.9   0.0    0.0045        40       1      32 [.    1013    1046 ..     983    1058 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.9
        VCBS   9 Dlvva.....ndgglrvyrnngdGtftdv 32 
                 Dl+v+     + g+l +  n++  t+  v
  KIR65574.1 221 DLLVVareegGFGQLLIVKNRNAATLDAV 249
                 66666566644688888888887776555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00052
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftd 31 
                 D+ gD ++Dl++++  g+lr y ++  G + +
  KIR65574.1 773 DVTGDDLPDLLLVDaTGNLRTYAGDEGGELYS 804
                 78888888888887668888888887777654 PP

  == domain 3  score: 25.6 bits;  conditional E-value: 1.5e-09
        VCBS   4 gDGrlDlvvan.dgglrvyrnngdGtftdvtk.....tslgg....sgggtgv.avgDlDgDGdlDllv 61 
                 gDG  Dl++ + dg++++y ++g G+f   +      +   +    +g++t + avgD+ gD ++Dl+v
  KIR65574.1 842 GDGITDLFARTpDGRFWLYPGDGYGSFDVNRRlrvllP---PgapdPGTWTQIkAVGDVTGDQRPDLVV 907
                 9*********989**************95554332221...23445888888846************98 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 4.1e-05
        VCBS  20 vyrnngdGtftdvtkt.slggsgggtg..vavgDlDgDGdlDllv 61 
                  ++  g  t+ + ++   + gs +g+   v v+D+D DG +Dll+
  KIR65574.1 912 AFWMLGGYTGASFQEAtLMEGSAWGRRdiVNVADVDVDGTPDLLW 956
                 5777776666655554144445555546799************96 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.0045
        VCBS    1 DldgDGrlDlvva..ndgglrvyrnngdGtftdv 32  
                  D+ gD  +Dl v   +dg++rvy+ +++  +++v
  KIR65574.1 1013 DVSGDQVPDLWVRygSDGQIRVYHPSATSAGSPV 1046
                  8889999999998645899999988776666555 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.9     0.001         9       8      21 ..     772     785 ..     770     796 .. 0.87
   2 ?   -0.4   0.6      0.15   1.4e+03      12      21 ..     842     851 ..     842     869 .. 0.78
   3 !   11.9   0.2     2e-05      0.18       6      23 ..     893     913 ..     893     925 .. 0.77
   4 !   11.7   2.1   2.5e-05      0.22       4      23 ..     940     963 ..     939     981 .. 0.70
   5 ?   -1.6   0.1      0.34   3.1e+03       9      31 ..    1013    1031 ..    1007    1035 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.001
                 ESTSSSSS-EEEEE CS
      FG-GAP   8 gDvNGDGyaDLavG 21 
                 gDv GD ++DL++ 
  KIR65574.1 772 GDVTGDDLPDLLLV 785
                 9***********96 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.15
                 SSSS-EEEEE CS
      FG-GAP  12 GDGyaDLavG 21 
                 GDG +DL   
  KIR65574.1 842 GDGITDLFAR 851
                 9*****9776 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 2e-05
                 EEESTSSSSS-EEEEEE...T CS
      FG-GAP   6 avgDvNGDGyaDLavGA...p 23 
                 avgDv GD  +DL+v A   +
  KIR65574.1 893 AVGDVTGDQRPDLVVRAgtaF 913
                 79**************96653 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 2.5e-05
                 SEEEESTSSSSS-EEEEEE....T CS
      FG-GAP   4 slavgDvNGDGyaDLavGA....p 23 
                 ++ v+Dv+ DG +DL++      +
  KIR65574.1 940 IVNVADVDVDGTPDLLWRNldngN 963
                 589**************9666541 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 0.34
                  STSSSSS-EEEEEETT-ETCSTT CS
      FG-GAP    9 DvNGDGyaDLavGApeskggayg 31  
                  Dv GD ++DL v      g++++
  KIR65574.1 1013 DVSGDQVPDLWVR----YGSDGQ 1031
                  8999999999887....455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1061 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 6757.87
//
Query:       KIR65575.1  [L=293]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-15   55.2   0.1    6.5e-15   55.2   0.1    2.6  2  HTH_31    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.022   14.8   0.0      0.038   14.0   0.0    1.4  1  HTH_19    Helix-turn-helix domain
      0.049   13.7   0.0       0.12   12.5   0.0    1.7  1  HTH_3     Helix-turn-helix
       0.14   11.7   0.0       0.32   10.6   0.0    1.6  1  HTH_24    Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.1   1.4e-18   6.5e-15       1      61 [.      12      71 ..      12      74 .. 0.95
   2 ?   -2.8   4.0       1.9   8.5e+03      38      59 ..     179     200 ..     139     204 .. 0.59

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 1.4e-18
      HTH_31  1 aLGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaer 61
                +LG++Lr+lRe a ++ +++A++l +s+ ++ r+E+G+   + p ++ea++r++g++++  
  KIR65575.1 12 QLGRYLRELRENAYVTVAAAAKQLEWSAPRIWRYETGQV-SMHPNDVEAMCRVYGASRETI 71
                79*************************************.6***************99865 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.9
      HTH_31  38 rrgrpspavlealaralgldpa 59 
                 rr+++ +a+ ++ ++al ++++
  KIR65575.1 179 RRPLRDRAAMARQLDALTVTGE 200
                 3444556666666666666665 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   8.5e-06     0.038       1      57 [.      14      69 ..      14      77 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.5e-06
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidle 57
                G+ L+e+Re++  t ++ a++l  s  +i  +E+g+  ++ ++++ + ++ +g + e
  KIR65575.1 14 GRYLRELRENAYVTVAAAAKQLEWSAPRIWRYETGQVSMH-PNDVEAMCRVYGASRE 69
                89*********************************88688.5888888888887766 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.6e-05      0.12       1      51 [.      17      67 ..      17      71 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.6e-05
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSE CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvs 51
                l+elR+ +  + + +A+ l  s   i r+E G+ +  +  ++++++++g s
  KIR65575.1 17 LRELRENAYVTVAAAAKQLEWSAPRIWRYETGQVSMHPNDVEAMCRVYGAS 67
                89*******************************999999999999999966 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.2e-05      0.32       9      37 ..      17      45 ..      17      45 .. 0.97

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.2e-05
      HTH_24  9 LelLqknprisqreLAerlglSpstvnrr 37
                L++L++n+  + +  A++l  S + ++r+
  KIR65575.1 17 LRELRENAYVTVAAAAKQLEWSAPRIWRY 45
                89*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2306.59
//
Query:       KIR65576.1  [L=59]
Description: hypothetical protein TK50_09335 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-21   76.2   0.6    1.7e-21   76.0   0.6    1.0  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.6   9.4e-26   1.7e-21       3      53 ..       2      51 ..       1      52 [. 0.95

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 9.4e-26
      DUF397  3 WrKSsySgggggnCVEvaalpdavavRDSkdpdgpvLtftpaewaaFlagv 53
                Wr S++Sgg+g nCVEvaa +dav+vRDSkd++gp+L f pa+wa+F+++ 
  KIR65576.1  2 WRTSTRSGGEG-NCVEVAAFADAVGVRDSKDRQGPALSFVPAAWAGFVGAT 51
                ********998.7****9999999************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 426.36
//
Query:       KIR65577.1  [L=279]
Description: ribonuclease BN [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-19   69.7  22.4    3.2e-19   69.5  22.4    1.0  1  Virul_fac_BrkB  Virulence factor BrkB


Domain annotation for each model (and alignments):
>> Virul_fac_BrkB  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5  22.4   1.8e-23   3.2e-19       3     257 ..      22     271 ..      20     272 .. 0.82

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 1.8e-23
  Virul_fac_BrkB   3 ddlsllAaalayytllSlfPlllvllavlgllglddelqeqlldllaevlpegaaevvedilqrllnqaslgllglavll..wsasggvsalrra 95 
                     +dlsl Aaa+++y  ++++P+ l+++  +gl++ + +  + l+++++e+lp          +++ll+++ lgl   ++l   + as + ++lrra
      KIR65577.1  22 RDLSLHAAAITFYGSIAVVPVALLAIWTTGLVA-GADRVRRLTSYAIETLPT--DIGAHRAVAALLEAG-LGLTPALALAslLPASLYGEGLRRA 112
                     699**************************9865.7799*************6..344455556666666.888888888888************* PP

  Virul_fac_BrkB  96 lnkiygveesrs...flrkrllsllllllllvllllslvlsvflqslllasapllglglelsell..llqllrwlvallllvlafallYrvlpnv 185
                     +  +   +e+ +    +r+rll l ll  +++lll  l+++ ++  l+++   + g      +l+  l  l+ w    l+l+ ++++++rv+ ++
      KIR65577.1 113 FVSVAAPREPGGslvGWRGRLLLLPLLAPAPALLLSILLALPVTTHLVRQGG-WRG------ALGvvLSFLGVW----LVLTPVLMWVFRVVGPA 196
                     ***99775533357788***********999999999999998888555322.322......333324555555....599999*********** PP

  Virul_fac_BrkB 186 kvrlraalpGallaallwllvkilfslylsnfasynaiYG...slgaliilllWlylsalilLlGaelnaelqer 257
                      + + ++l  + ++a+ ++++ ++f+l+ s     +  +G   ++g+ +++llWly++ +i+L+G++ + +l+++
      KIR65577.1 197 SPDFLSTLAIGSFTAANLSGFLHGFVLFASLPLDLGVPFGgfdAIGGGVAVLLWLYFFHVIVLAGYSATLALSDW 271
                     99999999999999999999**********999887777755589999*******************99998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1835.60
//
Query:       KIR65578.1  [L=107]
Description: hypothetical protein TK50_09350 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        7.4    6.3  10.5          2    8.1   6.2    2.1  2  RhodobacterPufX  Intrinsic membrane protein PufX


Domain annotation for each model (and alignments):
>> RhodobacterPufX  Intrinsic membrane protein PufX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   6.2   0.00011         2      28      54 ..       3      30 ..       1      34 [. 0.80
   2 ?   -1.1   0.1     0.079   1.4e+03      32      45 ..      59      72 ..      56      75 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00011
  RhodobacterPufX 28 AgyAavfvlvllfllv.alaliGrlLPe 54
                     A  Aav+ +vll++l+ ++al+G lLP 
       KIR65578.1  3 ATAAAVVAVVLLVVLAlVVALVGMLLPM 30
                     56689998998888863689*******6 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.079
  RhodobacterPufX 32 avfvlvllfllval 45
                     ++ vl++l+ l+++
       KIR65578.1 59 GGAVLGVLLALAGF 72
                     56789999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       987  (0.0550505); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.49
# Mc/sec: 662.68
//
Query:       KIR65579.1  [L=206]
Description: hypothetical protein TK50_09355 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-17   61.7   0.0    7.7e-17   61.4   0.0    1.1  1  Uma2      Putative restriction endonuclease


Domain annotation for each model (and alignments):
>> Uma2  Putative restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   4.3e-21   7.7e-17       6     165 ..      37     192 ..      32     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 4.3e-21
                 HHHHSTTEEEEETTS-EEE.EETSHHHHHHHHHHHHHHHHHHHHH-SEEEEETT--EE-TTS-EE--SEEEEEHHHHTS-HHHHSS-SS--SEEEEE-- CS
        Uma2   6 qlpeneevryelvdGeliemsplggeheriaalLaallgnwlrerklgrvfaselgvrlpeeserePDvavvrgeweresrriweelpaaPdlvvEVls 104
                  lpe +++++e ++G++i+ + +g +h+++   La ll++++r+   g++++ e+++   +++   PD+av+r+  +  ++        +  l  EV+s
  KIR65579.1  37 LLPETNGPKVEVLSGSVIVTPHAGFDHQNVELDLAYLLKQAARR--AGLWLYHEVNIVS-GDDLFIPDIAVLRAS-GGGRTT---MKISDAVLLGEVVS 128
                 35599**************99999**************999777..899***9999999.9************99.333333...5689999******* PP

                 TTS-.HHHHHHHHHHHHTT-SEEEEEE..TTTTEEEEE-TT....S--EEEES-SEEE-TTTST CS
        Uma2 105 psts.kdleeKlelYaalgvpeywlvd..pkertvevfrledgeyqlvevleegetlslelalp 165
                 p+++ kd  +  ++Yaa+ vp  + vd   + +t+ +++l+dgey++      g t + ++ ++
  KIR65579.1 129 PGNRrKDVIDRPREYAAAAVPFFLRVDlrNRVPTLALYELVDGEYRPLAAAAAGSTFTMSRPFE 192
                 ***************************5556679*************99988888888877774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 1378.61
//
Query:       KIR65580.1  [L=419]
Description: 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-38  130.6   0.1    1.4e-37  129.3   0.1    1.7  1  DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomer
    5.5e-38  129.0   0.0    1.4e-37  127.7   0.0    1.7  2  DXP_redisom_C    1-deoxy-D-xylulose 5-phosphate reductoisomer
    1.7e-31  108.8   0.0      3e-31  108.1   0.0    1.4  1  DXPR_C           DXP reductoisomerase C-terminal domain


Domain annotation for each model (and alignments):
>> DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.3   0.1   2.3e-41   1.4e-37       1     129 []       7     145 ..       7     145 .. 0.95

  Alignments for each domain:
  == domain 1  score: 129.3 bits;  conditional E-value: 2.3e-41
                      EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEE.SSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTS..........SSEEEESHHHHH CS
  DXP_reductoisom   1 vviLGsTGSIGtqtLdvieenpdkfevvalaa.gsnvellaeqakefkpklvavadeeaaeelkealkekel..........ktevlvGeealk 83 
                      +v+LGsTGSIGtq++d++++npd+f+vval a g nvella+qa e+ ++ v va+++aa++l+ a+ ++ +           +++++G++a++
       KIR65580.1   7 LVLLGSTGSIGTQAIDIVRRNPDRFRVVALGAgGGNVELLAAQALELGVEAVGVAKASAAQDLQLAFYAEASrrgwssgdfkLPKIVAGPDAMT 100
                      589***************************9999******************************99988666688888988889********** PP

                      HHHCHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE--SHHHHHHH CS
  DXP_reductoisom  84 elaeeeeadvvvaaivGaaGLkptlaaikagkriaLANKEsLVvaG 129
                      ela+   +dvv++++vG+ GL+ptlaa++ag+++aLANKEsLV++G
       KIR65580.1 101 ELAQ-WPCDVVLNGVVGSLGLAPTLAALRAGRTLALANKESLVAGG 145
                      ***9.66*************************************98 PP

>> DXP_redisom_C  1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.8   1.1e+04      21      41 ..      29      49 ..      20      53 .. 0.70
   2 !  127.7   0.0   2.3e-41   1.4e-37       1      84 []     158     241 ..     158     241 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.8
                   TTEEEEEEEE--GTTTTS-HH CS
  DXP_redisom_C 21 kevekiiltasGGpfrklkle 41
                   ++ + + l a GG    l ++
     KIR65580.1 29 DRFRVVALGAGGGNVELLAAQ 49
                   567788899999987666555 PP

  == domain 2  score: 127.7 bits;  conditional E-value: 2.3e-41
                    EEE-SHHHHHHHHHSGCCCCTTEEEEEEEE--GTTTTS-HHHHCT-SHHHHHS-SS----HHHHHHHHHSHHHHHHHHHHHHHC CS
  DXP_redisom_C   1 ilpvDsEhsaifqllkeekkkevekiiltasGGpfrklkleeleevtveealkhPnWsmGkkitvdsatlmNkglEvieakllf 84 
                    i+pvDsEhsa++q+l+  ++ ev+++++tasGGpfr ++++el++vt+e+al+hP+W+mG+ +t++sat++Nk+lEviea+ lf
     KIR65580.1 158 IVPVDSEHSALAQCLRGGARGEVRRLVVTASGGPFRGRRRDELTQVTPEQALAHPTWNMGPVVTINSATMVNKALEVIEAHELF 241
                    79*********************************************************************************9 PP

>> DXPR_C  DXP reductoisomerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   0.0     5e-35     3e-31       2     114 ..     274     390 ..     273     391 .. 0.94

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 5e-35
                 -SS-THHHHHHHHHTTS-...------HHHHEEEEEB---TTTTCHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTSS-TTHHHHHHHHHHH.TTT. CS
      DXPR_C   2 gtpDMrlpIayaLayper...gverldlaklgsltFekpdlerFpclklayealkaggtapavlnAAnEvaveaFlegkisFldIaeiieevle.seek 96 
                 ++pDMrlpIa ++ +p+r    ++++d++++++++F ++d e Fp+++la+ a++ag+  pa++nAAnE++v+aF++g++ Fl I++++++vl+   + 
  KIR65580.1 274 SPPDMRLPIALGIGWPDRvpdAAAAVDWTTAHTWEFAPLDDEAFPAVALAKAAGEAGRCRPAIYNAANEECVAAFVAGRLPFLGIVDTLRRVLDdAPDF 372
                 78****************7644999*********************************************************************53347 PP

                 ...SSHHHHHHHHHHHHH CS
      DXPR_C  97 seaksledileldaeare 114
                  e+ ++ed+l+++++ar+
  KIR65580.1 373 AEPGTVEDVLAAESWARA 390
                 8999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3116.49
//
Query:       KIR65581.1  [L=416]
Description: zinc metalloprotease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-45  155.5   0.0    2.1e-45  154.9   0.0    1.2  1  Peptidase_M50   Peptidase family M50
      1e-12   48.2   0.0    1.8e-12   47.4   0.0    1.4  1  PDZ_2           PDZ domain
    3.3e-08   33.2   0.0    7.1e-08   32.2   0.0    1.4  1  PDZ_6           PDZ domain
     0.0016   18.8   0.0     0.0031   17.8   0.0    1.4  1  PDZ             PDZ domain


Domain annotation for each model (and alignments):
>> Peptidase_M50  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.9   0.0   4.7e-49   2.1e-45       2     227 ..      10     364 ..       9     371 .. 0.83

  Alignments for each domain:
  == domain 1  score: 154.9 bits;  conditional E-value: 4.7e-49
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF
  Peptidase_M50   2 filllgilvvvHElGHflvAklcgvkveefsigfGpkllsfkkgeteYaiallpLGGyVkmageepeeelseeeaka..flkkspwqrllivlAGp 95 
                    f+l+++++v +HE GH+l+Ak++g+kv ++ +gfGp+++sfk+geteY ++ +pLGG++k+ g+ p+ +  e++++   +   ++w+r +++ AG 
     KIR65581.1  10 FALAILVSVSLHEAGHMLTAKAFGMKVTRYFVGFGPTIWSFKRGETEYGLKGIPLGGFCKIVGMTPQDDDVEPGDEHraMWRYPVWKRTIVMSAGS 105
                    899**************************************************************99998887666556***************** PP

                    XXXXXXXXXXXXX................................................................................... CS
                    xxxxxxxxxxxxx................................................................................... RF
  Peptidase_M50  96 lanfilailvfvv................................................................................... 108
                    ++ f la+++ ++                                                                                   
     KIR65581.1 106 VTHFALALVATWIiavsaglpnpdfpttdaearqepavialarcvvpenavrecatsdpaspaatanlrdgdritsfngtpinnygelltalratk 201
                    *************999******99998888888888888888888888888888888888888888888888888888888777777777777766 PP

                    .....................-EEECECTTTSCEE-SEEEC-..............................XXXXXXXXXXXXXXXXXXXXXXXX CS
                    .....................xxxxxxxxxxxxxxxxxxxxx..............................xxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 109 .....................pkkskeseeekrgviGvspkp..............................vkkegllealkegvektlkvvvlt 153
                                                                                             +++g+++al + ++ t +++v t
     KIR65581.1 202 pgdtaqigyvrdgqpgttstvL-------------------AqtqrpplddpkgavgpvaalgiglqfstptRVQYGPVAALGGTARFTGDMAVGT 278
                    6665555555555555554441...................0444455555555555555556666667788899999999999999999999999 PP

                    XX..........XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    xx..........xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 154 vk..........algklitg.klslktlggpisiaqlaseaaeagls.sflqllalisvnLgilNLlPipvLDGghllfalleair 227
                     +          al+  i g + +++t   +++  +l +ea+e++++  f+ l++++++ +g++NLlP+ +LDGgh++ a +e++r
     KIR65581.1 279 YEamkripqkvpALWTAISGgERDVDTPISVVGASRLGGEAVENNAWlVFFMLFVSLNFFIGVFNLLPLLPLDGGHIAIAWFERVR 364
                    99778888888888888888899999999999999999****999885777778899**************************998 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0     4e-16   1.8e-12      22      79 ..     163     220 ..     153     223 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 4e-16
                 -TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEE CS
       PDZ_2  22 keggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktve 79 
                 ++++Paa a+l+ gD+i++++g+++++  +l ++l+++kpGdt ++ + Rdg+  t++
  KIR65581.1 163 DPASPAATANLRDGDRITSFNGTPINNYGELLTALRATKPGDTAQIGYVRDGQPGTTS 220
                 689*************************************************987765 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   1.6e-11   7.1e-08       5      45 ..     162     200 ..     160     207 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 1.6e-11
       PDZ_6   5 VdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgs 45 
                  dp sPA++A lr GD+i+s+NG+p+   ++ ++  +lr+ 
  KIR65581.1 162 SDPASPAATANLRDGDRITSFNGTPI--NNYGELLTALRAT 200
                 5899**********************..*******999944 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     7e-07    0.0031      35      72 ..     164     201 ..     161     209 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7e-07
                 TTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHT CS
         PDZ  35 pggaaeadglkvGDkIlsvNgvdvenvsheeavqaikg 72 
                 p ++a++++l+ GD+I+s Ng++++n  ++  ++  ++
  KIR65581.1 164 PASPAATANLRDGDRITSFNGTPINNYGELLTALRATK 201
                 557788888*****************976655555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3087.97
//
Query:       KIR65582.1  [L=390]
Description: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.4e-133  444.1   0.1   4.3e-133  443.7   0.1    1.0  1  GcpE       GcpE protein
  ------ inclusion threshold ------
       0.02   14.5   0.4        2.8    7.5   0.1    2.5  3  MR_MLE_C   Enolase C-terminal domain-like
      0.092   13.0   0.1       0.27   11.4   0.1    1.9  1  zf-RING_7  C4-type zinc ribbon domain


Domain annotation for each model (and alignments):
>> GcpE  GcpE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  443.7   0.1  7.2e-137  4.3e-133       2     348 ..      23     362 ..      22     364 .. 0.99

  Alignments for each domain:
  == domain 1  score: 443.7 bits;  conditional E-value: 7.2e-137
                 --EEETTEEESTTS--EEEEE--S-TT-HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHHTT-SS-EEEEE-SSCHHHHHHHHCC-SEEE CS
        GcpE   2 revkvgkvkiGgeapiavqsMtntdtadveatvkqikrlaeaGaelvRvtvqdeeeaealkeikeklkkkglkvplvaDihfnpklaleaaeagvdkvR 100
                 r+++vg+v++Gg+ap++vqsMt+t t+dv+at++qi++l++ G+++vRv+v++++++eal +i +k+     ++p++aDihf+p++  +a++ag+++vR
  KIR65582.1  23 RQIMVGSVPVGGGAPVSVQSMTTTLTSDVNATLQQIAELTASGCQIVRVAVPSQDDVEALPAIARKS-----QIPVIADIHFQPRYVFAAIDAGCAAVR 116
                 89*****************************************************************.....*************************** PP

                 E-TTTSSSTTHHHHHHHHHHHHHHHHT-EEEEEEEGGG--HHHHHHHCC.THHHHHHHHHHHHHHHHHTT--GEEEEEE-SSHHHHHHHHHHHHHH--S CS
        GcpE 101 iNPGnigdgkkkeekvkelveaakekgtaiRiGvNhGSLskrllskygd.tpealvesalefleilekldfkdiviSlKasnvvvmveayrllaeeldy 198
                 +NPGni +    ++kvke+ +aa + g++iRiGvN+GSL+krll+kyg+ t+ealvesal +++++e+++f+di+iS+K+ ++vvm++ayr+lae++dy
  KIR65582.1 117 VNPGNIRQ---FDDKVKEIAKAAGDAGVPIRIGVNAGSLDKRLLAKYGKaTAEALVESALWECSLFEEHGFRDIKISVKHNDPVVMIRAYRQLAERCDY 212
                 ******99...79************************************99************************************************ PP

                 -EEE--TT-ECHHHHHHHHHHHHHHHHHTT--SEE---ECS-CCHHHHHHHHHHHHTTS--SS-EEEE----TTS-CHHHHHHHHHHHHCCCHHCG-EE CS
        GcpE 199 plHlGvTEAGegedgriksavgigaLLaegiGdTiRvSLtedpeeEvkvakeiLqalrlrksktelisCPsCgRtlfdlqelveeveealehlkkglki 297
                 plHlGvTEAG   +g+iksav++gaLLaegiGdTiRvSL++ p+eE+kv+++iL++l+lr+++ e++sCPsCgR ++d+ +l+eev++ le l  +l++
  KIR65582.1 213 PLHLGVTEAGPAFQGTIKSAVAFGALLAEGIGDTIRVSLSAPPVEEIKVGNQILESLGLRERGLEIVSCPSCGRAQVDVYKLAEEVTAGLEGLPVPLRV 311
                 *************************************************************************************************** PP

                 EEESSTCCHHHHCCCSSEEEEEBTTCEEEEETTEEEECEESSCHHHHHHHH CS
        GcpE 298 avmGCiVNGpgEaadAdlGivggkgkvslykkkevvkkvpeeeavdellel 348
                 avmGC+VNGpgEa++AdlG+++g+gk ++++k++vvk+vpe ++v++l+e+
  KIR65582.1 312 AVMGCVVNGPGEAREADLGVASGNGKGQIFVKGKVVKTVPEGQIVETLIEE 362
                 ************************************************985 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1   0.00046       2.8      81     155 ..      73     146 ..      49     156 .. 0.78
   2 ?    2.9   0.1     0.011        68      10      71 ..     108     166 ..     102     174 .. 0.72
   3 ?    4.1   0.0    0.0048        29      10      44 ..     179     211 ..     172     243 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00046
                 SSTTTHHHHHHHHHHHH.SSEEEESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHH.HHHHHHHHHHHTT-EEEEB CS
    MR_MLE_C  81 vppeddleglaelrara.sipiaagEslysradfrelleagavdivqpdvsrvgGit.earkvaalaeafgvpvapH 155
                 vp++dd+e+l +++ r+ +ip++a+ + + r+ f+++  + ++ +v+++++++  ++ +++++a+ a  +gvp+ ++
  KIR65582.1  73 VPSQDDVEALPAIA-RKsQIPVIADIHFQPRYVFAAI--DAGCAAVRVNPGNIRQFDdKVKEIAKAAGDAGVPIRIG 146
                 788899********.5559*********999999988..44577778888877777525778888888888887655 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.011
                 HHHHT-SEEEEETSSSHHHHHHHHHHHHHHHHTTTSTSEEEEE-TTT.SBHHHHHHHHHHHGG CS
    MR_MLE_C  10 vaeqgfravKlkvggddvaedvervravreavgpgddvdlmvDanqa.wdlatAirvarelee 71 
                 ++ +g++av++++g   +++  + v+++ +a+g+   v +++ +n++ +d +   +++++++e
  KIR65582.1 108 ID-AGCAAVRVNPGN--IRQFDDKVKEIAKAAGD-AGVPIRIGVNAGsLDKRLLAKYGKATAE 166
                 44.599999999666..67777788888888877.4679999999885666666666666655 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.0048
                 HHHHT-SEEEEETSSSHHHHHHHHHHHHHHHHTTT CS
    MR_MLE_C  10 vaeqgfravKlkvggddvaedvervravreavgpg 44 
                  +e+gfr +K+ v ++d+   ++  r++ e++  +
  KIR65582.1 179 FEEHGFRDIKISVKHNDPVVMIRAYRQLAERC--D 211
                 5789************9999999999999988..3 PP

>> zf-RING_7  C4-type zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   4.5e-05      0.27      21      31 ..     276     286 ..     256     286 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.5e-05
                 TB-EE-TTT-- CS
   zf-RING_7  21 devvtCpeCGR 31 
                  e+v Cp+CGR
  KIR65582.1 276 LEIVSCPSCGR 286
                 47********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 2675.61
//
Query:       KIR65583.1  [L=201]
Description: PadR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-23   80.6   0.0    2.2e-22   78.8   0.0    1.8  2  PadR       Transcriptional regulator PadR-like family
     0.0012   18.6   0.0     0.0022   17.8   0.0    1.3  1  AphA_like  Putative AphA-like transcriptional regulator
  ------ inclusion threshold ------
      0.023   15.4   0.0       0.11   13.1   0.0    1.9  2  RTP        Replication terminator protein
      0.058   14.0   4.7        2.2    8.9   0.2    2.8  3  HTH_32     Homeodomain-like domain


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   4.8e-26   2.2e-22       1      74 [.      64     135 ..      64     136 .. 0.96
   2 ?   -1.0   0.0      0.39   1.7e+03      57      68 ..     189     200 ..     180     201 .] 0.73

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 4.8e-26
                 HHHHHCCS-EEHHHHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHH CS
        PadR   1 iLalleeqpsyGyeiikeleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrela 74 
                 +Lall+e+p++Gye+i+e++ +++g++++s+Gs+Yp+L+ Le+eg+v+++ ee+  g+ rk +++T+aGr+e  
  KIR65583.1  64 VLALLTERPMHGYEMIQEIDSRTGGAWRPSPGSIYPTLQLLEDEGVVAATTEEA--GGGRKRFTVTEAGRAEAD 135
                 8*************************************************9985..999***********9975 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.39
                 SS-EEEEEESHC CS
        PadR  57 gpprkyYrlTda 68 
                 + +rk+Y++ ++
  KIR65583.1 189 ETRRKLYAILAE 200
                 568999998655 PP

>> AphA_like  Putative AphA-like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.8e-07    0.0022       9      88 ..      57     136 ..      55     147 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.8e-07
   AphA_like   9 keavrLvvLGlieraplryselagavrhlvsriagPsldLlgsslellreeGLveavdGeGmednalLaiteaGrrelqa 88 
                 +  vr +vL l+   p+   e+ + +    + ++ Ps   ++ +l+ll  eG+v a   e      + ++teaGr+e  +
  KIR65583.1  57 RPNVRAAVLALLTERPMHGYEMIQEIDSRTGGAWRPSPGSIYPTLQLLEDEGVVAATTEEAGGGRKRFTVTEAGRAEADE 136
                 5679*****************************************************99999999**********99765 PP

>> RTP  Replication terminator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.4e-05      0.11      14      68 ..      64     117 ..      57     140 .. 0.80
   2 ?   -0.2   0.0      0.34   1.5e+03      80     107 ..     156     183 ..     147     194 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.4e-05
                 HHHHHHTT-EBCTCHHHHHHHHHTTTT----HHHHHHHHHHHHHTTSEEEEEEEB CS
         RTP  14 litlvekkklyglklldelkkeFkelgykPnhseiyralhelvedgilkrrkelk 68 
                 ++ l+ +++++g+++++e+ ++    +++P++  iy +l+ l ++g++  + e  
  KIR65583.1  64 VLALLTERPMHGYEMIQEIDSRT-GGAWRPSPGSIYPTLQLLEDEGVVAATTEEA 117
                 5778899999********98753.345********************99887765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.34
                 EESS..HHHHHHHHHHHHHHHHHHHHHH CS
         RTP  80 sltdeGkekaklykkqvkidldrckkll 107
                 +++d+G+++++++++ + +  d +++  
  KIR65583.1 156 DIRDAGTQAMHALRQVMMTGTDDQRERA 183
                 5778888888888887777766665544 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2    0.0005       2.2      23      70 ..      50      98 ..      41     101 .. 0.64
   2 ?    6.6   0.1    0.0027        12       2      48 ..      97     144 ..      96     160 .. 0.79
   3 ?   -0.2   0.1      0.35   1.5e+03      30      43 ..     176     189 ..     146     200 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0005
      HTH_32 23 rgrprklsdevrariiallreeprWsprqlaarlaeregvk..vShstvy 70
                rgr r   + vra+++all+e+p  +++ +++ +  r g+   +S+ ++y
  KIR65583.1 50 RGRGRGRRPNVRAAVLALLTERPMHGYEMIQE-IDSRTGGAwrPSPGSIY 98
                2233334579*********8899777777777.52222443457777777 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0027
      HTH_32   2 vsrwlkRyneeGle.gLkdrprrgrpr.klsdevrariiallreeprWs 48 
                 ++ +l+  ++eG+  +  +++ +gr+r +++++ ra+  + + ++p W+
  KIR65583.1  97 IYPTLQLLEDEGVVaATTEEAGGGRKRfTVTEAGRAEADEAA-QAPPWG 144
                 566677778889664666777789***99*************.888774 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.35
      HTH_32  30 sdevrariiallre 43 
                 +d++r+r  ++l e
  KIR65583.1 176 TDDQRERAAQVLAE 189
                 67777777777633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1527.75
//
Query:       KIR65584.1  [L=1177]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-50  171.3   0.0    2.6e-26   92.8   0.0    2.3  2  ABC_tran        ABC transporter
    9.6e-16   58.2   0.3    1.2e-10   41.5   0.0    2.2  2  ABC_membrane    ABC transporter transmembrane region
    1.1e-09   38.9   6.6    8.5e-05   23.0   1.3    2.8  2  AAA_16          AAA ATPase domain
    2.1e-08   33.9   0.0       0.42   10.0   0.0    4.1  4  SMC_N           RecF/RecN/SMC N terminal domain
      3e-08   33.3   0.3      0.003   17.2   0.1    2.6  2  AAA_29          P-loop containing region of AAA domain
      7e-08   32.8   1.4      0.024   14.9   0.0    3.7  2  AAA_22          AAA domain
    1.2e-06   28.6   0.0     0.0026   17.6   0.0    2.6  3  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
      3e-06   27.9   0.0      0.018   15.5   0.0    2.1  2  AAA_23          AAA domain
    3.1e-05   24.0   1.8       0.24   11.5   0.0    3.0  2  MMR_HSR1        50S ribosome-binding GTPase
    3.5e-05   23.8   0.2       0.33   10.8   0.0    2.3  2  RsgA_GTPase     RsgA GTPase
    0.00013   22.0   0.4       0.74    9.8   0.0    3.1  3  AAA_5           AAA domain (dynein-related subfamily)
    0.00026   21.2   0.4     0.0013   18.8   0.1    2.0  2  DUF87           Helicase HerA, central domain
    0.00035   20.7   0.3       0.23   11.5   0.1    2.2  2  Dynamin_N       Dynamin family
    0.00039   19.8   0.0       0.32   10.3   0.0    2.4  2  Zeta_toxin      Zeta toxin
    0.00043   19.8   0.3       0.52    9.8   0.1    2.4  2  AAA_7           P-loop containing dynein motor region
    0.00044   20.4   2.8       0.85    9.8   0.0    3.1  2  AAA_33          AAA domain
    0.00051   19.8   9.1      0.036   13.8   1.1    3.4  2  AAA_30          AAA domain
    0.00067   19.3   0.4        1.1    8.8   0.1    2.4  2  cobW            CobW/HypB/UreG, nucleotide-binding domain
    0.00076   20.0   0.1        2.4    8.7   0.0    2.7  2  AAA_18          AAA domain
    0.00077   18.5   0.1      0.013   14.4   0.0    2.1  2  AAA_PrkA        PrkA AAA domain
     0.0009   19.7   0.0       0.75   10.2   0.0    2.9  2  AAA             ATPase family associated with various cellula
     0.0022   17.1   0.0        0.4    9.7   0.0    2.3  2  T2SSE           Type II/IV secretion system protein
     0.0026   17.7   0.7        2.4    8.1   0.2    2.5  2  NACHT           NACHT domain
     0.0051   16.4   0.0      0.014   15.0   0.0    1.7  1  AAA_27          AAA domain
  ------ inclusion threshold ------
      0.012   16.0   0.0        2.1    8.8   0.0    2.3  2  RNA_helicase    RNA helicase
      0.013   14.9   0.1        4.9    6.5   0.1    2.4  2  Mg_chelatase    Magnesium chelatase, subunit ChlI
      0.015   14.4   0.2        1.2    8.2   0.1    2.3  2  DUF815          Protein of unknown function (DUF815)
      0.016   15.2   2.4        4.4    7.3   0.0    2.8  2  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
      0.021   14.4  10.5        0.5    9.9   0.0    3.9  3  AAA_25          AAA domain
      0.027   14.2   0.1        7.3    6.3   0.0    2.5  2  IstB_IS21       IstB-like ATP binding protein
      0.035   14.3   0.7        2.2    8.5   0.0    2.7  2  AAA_28          AAA domain
      0.037   13.9   0.1        5.2    6.9   0.0    2.9  2  Ploopntkinase3  P-loop Nucleotide Kinase3
      0.043   13.2   0.8          5    6.4   0.1    2.5  2  FtsK_SpoIIIE    FtsK/SpoIIIE family
      0.051   13.3   0.0         10    5.9   0.0    2.3  2  PduV-EutP       Ethanolamine utilisation - propanediol utilis
      0.051   12.5   0.0        1.6    7.6   0.0    2.1  2  AAA_10          AAA-like domain
      0.052   13.3   0.8        1.6    8.5   0.1    2.3  2  ATP_bind_1      Conserved hypothetical ATP binding protein
      0.077   12.7   0.0        2.7    7.7   0.0    2.2  2  AAA_24          AAA domain
       0.11   12.2   0.0        6.1    6.4   0.0    2.0  2  AAA_15          AAA ATPase domain
       0.15   11.9   0.4         12    5.7   0.0    2.1  2  dNK             Deoxynucleoside kinase
       0.16   11.7   0.4         18    5.0   0.1    2.7  3  Cytidylate_kin  Cytidylate kinase
       0.18   11.7   0.0        5.8    6.8   0.0    2.2  2  ATPase_2        ATPase domain predominantly from Archaea
        0.2   11.1   0.3        5.3    6.6   0.0    2.5  2  FeoB_N          Ferrous iron transport protein B
       0.41    9.8   1.4        3.4    6.8   0.0    2.4  3  NB-ARC          NB-ARC domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.0   6.2e-29   2.6e-26       1     137 []     341     489 ..     341     489 .. 0.96
   2 !   76.4   0.0   6.9e-24   2.9e-21       2     135 ..     967    1112 ..     966    1114 .. 0.86

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 6.2e-29
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsklg 93 
                 l++vsl++ +g+ +a+vG++G+GKStL+k+l++ ++   G++ll ++dl + + e lr+ i+v+pq +++  ++ ++en      +  +++++al++lg
  KIR65584.1 341 LRDVSLTFARGRSYALVGRTGSGKSTLAKVLTRAVDLPRGTVLLGDTDLLDLDVELLRRWIAVVPQRTEILAGT-LAENvalfdpDLLADAARALDELG 438
                 689****************************************************************9999999.899999999988888999999999 PP

                 TGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  94 lke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 l++         dt+++++++ LS Gq q va ar+l+++p +++lDE+ta
  KIR65584.1 439 LTGwiaglpdGLDTRLGEGGHVLSAGQEQLVAFARILVRDPHVVILDEATA 489
                 9999999998899999*********************************96 PP

  == domain 2  score: 76.4 bits;  conditional E-value: 6.9e-24
                  EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH............HHHTCHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxx RF
    ABC_tran    2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren............esdeeie 86  
                  ++v+l++++g++v +vG+ G+GKS+Ll++lag ++   G+++++g++++e e     +++g++ q p++ +++ v++n                   
  KIR65584.1  967 HDVDLTVERGQLVLVVGPVGSGKSSLLRALAGIVH-HTGTLRWNGEPVTEPEVFLRPQQVGYVGQLPRVLSGT-VADNvalghdvdaaaaV------ 1055
                  79********************************9.69************9999999****************.99999**5555555554...... PP

                  HHHHHSTTGG...........TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                  xxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   87 kalsklglke...........lkdtvvksspssLSgGqkqrvalarallkkpkllllDEp 135 
                     s+ +l++                ++++++ LSgGq qr+alaral+ + +ll++D+ 
  KIR65584.1 1056 ---STAQLEHdlaaaggvgegGLGLLIGHKGTRLSGGQLQRLALARALAPRTELLVADDV 1112
                  ...5555444444444544776788888889***************************85 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0     3e-13   1.2e-10      44     263 ..      47     267 ..      17     278 .. 0.87
   2 !   14.8   0.0   4.1e-05     0.017     124     206 ..     747     829 ..     743     878 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 3e-13
                   HHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  44 sllllllglaqfilallqsyllnv.tgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfyl 139
                   + ++l+++l+ ++++ l   l +  +   +s ++rr+l +  l q++   + ++vGell r+  dv+++ + +    + + q  +t + + +v++++
    KIR65584.1  47 LFAVLAVALCAAVVTDLTIGLVMAgVTADWSADVRRRLCRVALGQDLPTLEGTPVGELLDRIDGDVYQVASEVRGHGVRIAQMSATGLLSTVVAMFV 143
                   34455555555555555555554448899**********************************************9999999999999999999999 PP

                   SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 140 gwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgl 236
                    w   + +la++ l++lv    ++++ +++  e +a+ ++ +v+eE++ g   V+   + +y+l+ f     +++ +g  + ++++++ ++   ++ 
    KIR65584.1 144 WWPAGVSMLALTALLALVLRRPTRRIAPARMAEEEAWTDLAAVMEEAVHGQDDVRTSLARPYVLRLFARRAATVLVRGNLVWRMSAWVTATGAGVIR 240
                   999*************************************************************************************999999999 PP

                   HHHHHHHHHHHHHHHTTSSTHHHHHHH CS
  ABC_membrane 237 lsyalalwfGttlvisgelsvgdlvvf 263
                   + ++ + + G++   +g ++   l+++
    KIR65584.1 241 VGIVGVVLGGAWALAAGRIDAARLTAV 267
                   999999777777777788877766555 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 4.1e-05
                   HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHH CS
  ABC_membrane 124 qslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekf 206
                   q++++++++   ++  +w  +l   +++++  l + +++++l++  +    a+a + + +  sls+ rtVk+ g+ + +l + 
    KIR65584.1 747 QAISVLIVVTMTLVSGSWVPALFFAGTMVVSGLAATLFGPRLERSARATVAARAAFATALVSSLSAARTVKLAGATRPVLGHL 829
                   7788888888889999*******************************************************988777665544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   1.3     2e-07   8.5e-05      23     160 ..     350     504 ..     339     515 .. 0.72
   2 !   17.7   0.3   8.6e-06    0.0036      21      52 ..     975    1004 ..     965    1136 .. 0.53

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2e-07
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala.............. 106
                 r+++  l+G  G+GKs+l++ l ra+   +g +l g++d l+ +++++  ++ +    +  + l+  ++++ +  +++ l +a++              
  KIR65584.1 350 RGRSYALVGRTGSGKSTLAKVLTRAVDLPRGTVLLGDTDLLDLDVELLRrWIAVV-P-QRTEILAGTLAENVALFDPDLLADAARaldelgltgwiagl 446
                 348899***********************************99999977788888.4.55566666655555555555555555555555577766554 PP

      AAA_16 107 ..avpelagaea...........srllellkrllallsrderplvlvlDdlq.wadeaslqllaaLlr 160
                                        s+  e+l ++++ l rd +  v++lD++  ++d+ + +l +   +
  KIR65584.1 447 pdG--------LdtrlgegghvlSAGQEQLVAFARILVRDPH--VVILDEATaRLDPVTETLVQRATD 504
                 431........0333556667799999999999999998555..999999877888888887665554 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 8.6e-06
      AAA_16   21 sgrpelvllsGesGvGKsslvrellralekdg 52  
                  +  ++lvl++G+ G+GKssl+r+l+  +  +g
  KIR65584.1  975 R--GQLVLVVGPVGSGKSSLLRALAGIVHHTG 1004
                  3..479******************96555543 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.12        48      26      42 ..     353     369 ..     340     375 .. 0.77
   2 !   10.0   0.0     0.001      0.42     136     210 ..     460     530 ..     391     535 .. 0.89
   3 !    9.5   0.0    0.0014       0.6      25      44 ..     977     996 ..     947    1009 .. 0.81
   4 ?    5.7   0.0     0.021       8.9     136     192 ..    1085    1135 ..    1038    1158 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.12
                 EEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlld 42 
                   a+vG+ GSGKs l  
  KIR65584.1 353 SYALVGRTGSGKSTLAK 369
                 4589*********9865 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.001
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvg 210
                 +LS G+ +Lva a ++    v+   +++lDe  a LD    + v +  ++   +   ivi++r   ++++d++v 
  KIR65584.1 460 VLSAGQEQLVAFARIL----VRDPHVVILDEATARLDPVTETLVQRATDRLLADRIGIVIAHRLSSVRRCDEVVV 530
                 79********988874....55566899******************99999999999********9999999875 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0014
                 SEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAi 44 
                 ++  +vGp GSGKs+ll A+
  KIR65584.1 977 QLVLVVGPVGSGKSSLLRAL 996
                 46789************998 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.021
                  CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf 192 
                   LSgG+ + +ala  +A     ++ l + D++ +aLD +   ++   l+e+   + +
  KIR65584.1 1085 RLSGGQLQRLALARALA----PRTELLVADDVSSALDVTTELELWAALREHG--VTV 1135
                  69***987766666555....56789************99999999998887..444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00012     0.052      16      38 ..     345     367 ..     340     373 .. 0.81
   2 !   17.2   0.1   7.3e-06     0.003      14      53 ..     968    1007 ..     959    1010 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00012
      AAA_29  16 tieidlkgatlltGpsGsGKSTl 38 
                 ++++ +  ++ l+G++GsGKSTl
  KIR65584.1 345 SLTFARGRSYALVGRTGSGKSTL 367
                 5667644499************9 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 7.3e-06
      AAA_29   14 ghtieidlkg.atlltGpsGsGKSTllDAiqalLvpakkvr 53  
                  + ++++++ g  +l++Gp GsGKS+ll A++ +   + ++r
  KIR65584.1  968 DVDLTVER-GqLVLVVGPVGSGKSSLLRALAGIVHHTGTLR 1007
                  34455554.359***************99987766555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.3   0.00014     0.059       5     104 ..     351     492 ..     349     517 .. 0.60
   2 !   14.9   0.0   5.8e-05     0.024       4     104 ..     975    1117 ..     972    1141 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00014
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee.........................erpevvfvtlpsst..sskdllrellralglelka...... 70 
                  ++ +++G +G+GK+tl++ l++  d    ++                          +r e++  tl++       dll + +ral+    +      
  KIR65584.1 351 GRSYALVGRTGSGKSTLAKVLTRAVDL---PRGtvllgdtdlldldvellrrwiavvpQRTEILAGTLAENValFDPDLLADAARALD----Elgltgw 442
                 57889****************999853...2225567666777766666655555444344433333333322222223333333333....2444477 PP

      AAA_22  71 ..........erlsseellealeqalrarav.....ielliiDEaqh.lr 104
                           + ++  ++l+a +++l a a+     ++++i+DEa   l+
  KIR65584.1 443 iaglpdgldtRLGEGGHVLSAGQEQLVAFARilvrdPHVVILDEATArLD 492
                 77777777776666667777777777777777777777888888776664 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 5.8e-05
      AAA_22    4 tagilvvtGesGtGKTtllrrlleqldeeakaee...............................erpevv..fvtlpsstsskdllrellralgle 67  
                  + ++++v+G++G+GK+ llr l+   +     ++                               ++   +   v++++  s ++l ++l+ a g++
  KIR65584.1  975 RGQLVLVVGPVGSGKSSLLRALAGIVHHTGTLRWngepvtepevflrpqqvgyvgqlprvlsgtvADNVALghDVDAAAAVSTAQLEHDLAAAGGVG 1071
                  67899*****************999876555555777777777776666666666555555554322222244555555555666655555555555 PP

      AAA_22   68 lka....erlsseell.ealeqalrarav...ielliiDEaqh.lr 104 
                    +     +++  +l   +l++ + ara    +ell+ D++   l+
  KIR65584.1 1072 EGGlgllIGHKGTRLSgGQLQRLALARALaprTELLVADDVSSaLD 1117
                  5557788555555555566666666666666778888888777563 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0049       2.1       3      22 ..     355     374 ..     353     403 .. 0.79
   2 ?   -2.5   0.0       8.3   3.5e+03     236     279 ..     460     499 ..     459     513 .. 0.79
   3 !   17.6   0.0   6.3e-06    0.0026       2      49 ..     979    1020 ..     978    1031 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0049
      AAA_21   3 vliGpNgsGKSnLLdaldll 22 
                 +l+G+ gsGKS+L + l  +
  KIR65584.1 355 ALVGRTGSGKSTLAKVLTRA 374
                 79*************99766 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 8.3
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll 279
                  lS G+ +l a++ +l r++    ++++DE  + L+P ++++l+
  KIR65584.1 460 VLSAGQEQLVAFARILVRDP---HVVILDEATARLDP-VTETLV 499
                 57899999999999999999...89*****9999999.444444 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 6.3e-06
      AAA_21    2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipsll 49  
                   +++Gp gsGKS+LL+al      ++ v+++++ +++g + ++ + +l
  KIR65584.1  979 VLVVGPVGSGKSSLLRAL------AGIVHHTGTLRWNGEPVTEPEVFL 1020
                  689***************......555778777777766666655555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0019      0.78      11      40 ..     342     372 ..     340     375 .. 0.77
   2 !   15.5   0.0   4.4e-05     0.018       1      40 [.     949     997 ..     949    1010 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0019
      AAA_23  11 rdqeidF.skgltlItGpNGaGKTTildAik 40 
                 rd+++ F     ++++G +G+GK+T+   ++
  KIR65584.1 342 RDVSLTFaRGRSYALVGRTGSGKSTLAKVLT 372
                 56677774446889************98776 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 4.4e-05
      AAA_23   1 kLkienfrsf........rdqeidF...skgltlItGpNGaGKTTildAik 40 
                 +L++ +f+ +        +d  +d+      l+l++Gp G+GK+++l+A+ 
  KIR65584.1 949 RLELAGFGALhtdgtlavHD--VDLtveRGQLVLVVGPVGSGKSSLLRALA 997
                 68888888888543332222..455776668******************97 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00058      0.24       3      22 ..     355     374 ..     353     387 .. 0.88
   2 !   10.7   0.1     0.001      0.42       2      21 ..     979     998 ..     978    1013 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00058
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 a+vGr+ +GKStL + lt++
  KIR65584.1 355 ALVGRTGSGKSTLAKVLTRA 374
                 89***************986 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.001
                 EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg 21 
                 v++vG   +GKS+L++al g
  KIR65584.1 979 VLVVGPVGSGKSSLLRALAG 998
                 789***************98 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00079      0.33      98     125 ..     350     377 ..     332     384 .. 0.82
   2 !   10.5   0.1     0.001      0.43      98     122 ..     975     999 ..     954    1010 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00079
                  TTSEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelel 125
                  +++  +lvG +G GKStL ++l+   +l
   KIR65584.1 350 RGRSYALVGRTGSGKSTLAKVLTRAVDL 377
                  568999***************9987665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.001
                  TTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpe 122
                  +++++++vG+ G GKS+L+ al++ 
   KIR65584.1 975 RGQLVLVVGPVGSGKSSLLRALAGI 999
                  459999***************9975 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0018      0.74       4      31 ..     356     383 ..     353     396 .. 0.86
   2 ?   -0.8   0.0       3.4   1.4e+03      59      87 ..     468     500 ..     456     510 .. 0.74
   3 !    8.4   0.0    0.0047         2       2      23 ..     979    1000 ..     978    1022 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0018
                 EE--SSSSHHHHHHHGGGGBS--EEEEE CS
       AAA_5   4 LvGppGtgKselaerlaaalnreveyvq 31 
                 LvG +G+gKs+la+ l +a+  +  +v+
  KIR65584.1 356 LVGRTGSGKSTLAKVLTRAVDLPRGTVL 383
                 9*****************9966655555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 3.4
                 ------....G-SEEEEESGGG--HHHHHHHHH CS
       AAA_5  59 lvraar....egeilvlDEveraesevlnsLls 87 
                 lv  ar     +++++lDE +   + v+++L +
  KIR65584.1 468 LVAFARilvrDPHVVILDEATARLDPVTETLVQ 500
                 555555666699*******99655777777765 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0047
                  EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5    2 vlLvGppGtgKselaerlaaal 23  
                  vl+vGp G+gKs+l + la  +
  KIR65584.1  979 VLVVGPVGSGKSSLLRALAGIV 1000
                  799**************99876 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   3.2e-06    0.0013      24      59 ..     352     386 ..     343     388 .. 0.87
   2 ?   -0.4   0.0       2.4     1e+03      26      43 ..     979     996 ..     968     998 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.2e-06
       DUF87  24 rHlAilgsTGsGKSntvavLleellekkgatililD 59 
                 r+ A +g+TGsGKS++++vL + +   +++t+l+ D
  KIR65584.1 352 RSYALVGRTGSGKSTLAKVLTRAVD-LPRGTVLLGD 386
                 7889****************98776.8888888755 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 2.4
       DUF87  26 lAilgsTGsGKSntvavL 43 
                 ++++g  GsGKS + + L
  KIR65584.1 979 VLVVGPVGSGKSSLLRAL 996
                 5799999*****999877 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.013       5.3       2      29 ..     355     382 ..     355     387 .. 0.91
   2 !   11.5   0.1   0.00054      0.23       1      20 [.     979     998 ..     979    1009 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.013
                 EEEEBTTTTHHHHHHHHHTS--S---SS CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpn 29 
                 a+vG + sGKS+++  L+++  lprg+ 
  KIR65584.1 355 ALVGRTGSGKSTLAKVLTRAVDLPRGTV 382
                 68****************9999999986 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00054
                 EEEEEBTTTTHHHHHHHHHT CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlg 20 
                 ++vvG + sGKSS+l aL g
  KIR65584.1 979 VLVVGPVGSGKSSLLRALAG 998
                 78****************98 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00076      0.32      18      51 ..     353     387 ..     341     392 .. 0.78
   2 !    6.7   0.0    0.0092       3.8      14      38 ..     974     998 ..     965    1009 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00076
  Zeta_toxin  18 lillgGqpGAGKselaellkdele.rqgnvvrldp 51 
                 ++ l+G +G+GKs+la+ l+++++ ++g v+  d+
  KIR65584.1 353 SYALVGRTGSGKSTLAKVLTRAVDlPRGTVLLGDT 387
                 6789******************9955555444444 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0092
  Zeta_toxin  14 erPklillgGqpGAGKselaellkd 38 
                 er  l+l++G  G+GKs+l+++l+ 
  KIR65584.1 974 ERGQLVLVVGPVGSGKSSLLRALAG 998
                 67789***************99875 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0064       2.7      29      58 ..     347     376 ..     343     383 .. 0.85
   2 !    9.8   0.1    0.0012      0.52      26      53 ..     969     996 ..     961    1005 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0064
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkkld 58 
                  ++++++  lvG tG+GK++++k l++++d
  KIR65584.1 347 TFARGRSYALVGRTGSGKSTLAKVLTRAVD 376
                 567889999*************99888765 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0012
       AAA_7  26 lelllknkkpvllvGptGtGKtviikdl 53 
                 ++l +++++ vl+vGp+G+GK+++++ l
  KIR65584.1 969 VDLTVERGQLVLVVGPVGSGKSSLLRAL 996
                 5788999***************998765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0021      0.85       4      32 ..     356     387 ..     354     490 .. 0.78
   2 !    9.6   0.1    0.0023      0.96       1      20 [.     978     997 ..     978    1016 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0021
      AAA_33   4 lvGlpGsGKstlaerllkklg...avllssdt 32 
                 lvG  GsGKstla+ l ++ +   +++l  dt
  KIR65584.1 356 LVGRTGSGKSTLAKVLTRAVDlprGTVLLGDT 387
                 79*************98877666744444444 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0023
      AAA_33   1 lvllvGlpGsGKstlaerll 20 
                 lvl+vG+ GsGKs l++ l+
  KIR65584.1 978 LVLVVGPVGSGKSSLLRALA 997
                 79**************9986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   1.5    0.0048         2      19     114 ..     352     504 ..     343     559 .. 0.62
   2 !   13.8   1.1   8.7e-05     0.036      15     119 ..     973    1135 ..     968    1155 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0048
      AAA_30  19 rvavltGpAGtGKttalkalreaweaa.g.........................grviglAptgkaAkvLaeelgi.eastiakllkrlk......... 81 
                 r  +l+G+ G+GK+t+ k+l++a++   g                         +r      t+  A +Lae++ + +                     
  KIR65584.1 352 RSYALVGRTGSGKSTLAKVLTRAVDLPrGtvllgdtdlldldvellrrwiavvpQR------TEILAGTLAENVALfD-----------Pdlladaara 433
                 46789***************999886645555555555555555553222222211......2223333333333221...........0111111112 PP

      AAA_30  82 ......................................grarlepgtllivDEagmvdtkqlaallkaaek 114
                                                       +r  +++ +++i DEa       +++l+++a++
  KIR65584.1 434 ldelgltgwiaglpdgldtrlgegghvlsagqeqlvafARILVRDPHVVILDEATARLDPVTETLVQRATD 504
                 22333444555666666666666666666666666666444455557777777776666666666666665 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 8.7e-05
      AAA_30   15 tsgdrvavltGpAGtGKttalkalreaweaag.........................grviglAptgkaAkvLaeelgi.eastiakllkrlk.... 81  
                   ++ ++++++Gp G+GK+ +l+al+ ++++ g                         +   +l+ t +   +L++++++ +a ++a+l + l+    
  KIR65584.1  973 VERGQLVLVVGPVGSGKSSLLRALAGIVHHTGtlrwngepvtepevflrpqqvgyvgQLPRVLSGTVADNVALGHDVDAaAAVSTAQLEHDLAaagg 1069
                  456679************************9988888888888888888866655531122333333333445566654356666777766667777 PP

      AAA_30   82 ...........................grarlepg.tllivDEagmv.dtkqlaallkaaekagakv 119 
                                             +  +l+p+ +ll+ D ++ + d ++  +l +a++++g++v
  KIR65584.1 1070 vgegglgllighkgtrlsggqlqrlalA-RALAPRtELLVADDVSSAlDVTTELELWAALREHGVTV 1135
                  7777777777777777777777777753.34555557777777766557777777777777766555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0044       1.8       4      48 ..     355     399 ..     353     419 .. 0.88
   2 !    8.8   0.1    0.0026       1.1       3      21 ..     979     997 ..     977    1008 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0044
                 EEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SSCHCCCCCCHC CS
        cobW   4 vltGflGsGKTtLlnhllenraglklavivNefgevsiDaellre 48 
                  l+G  GsGK+tL + l++  +  +  v++++   +++D ellr+
  KIR65584.1 355 ALVGRTGSGKSTLAKVLTRAVDLPRGTVLLGDTDLLDLDVELLRR 399
                 6899*************9*9999***********99999999976 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0026
                 EEEEESTTCCHHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhll 21 
                 ++++G++GsGK++Ll++l 
  KIR65584.1 979 VLVVGPVGSGKSSLLRALA 997
                 6899***********9986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0     0.007       2.9       3      21 ..     356     374 ..     355     427 .. 0.86
   2 !    8.7   0.0    0.0056       2.4       1      19 [.     979     997 ..     979    1017 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.007
      AAA_18   3 ltGtpGvGKttlakeLskr 21 
                 l G  G+GK+tlak L + 
  KIR65584.1 356 LVGRTGSGKSTLAKVLTRA 374
                 78999***********876 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0056
      AAA_18   1 IlltGtpGvGKttlakeLs 19 
                 +l+ G+ G+GK++l ++L+
  KIR65584.1 979 VLVVGPVGSGKSSLLRALA 997
                 799**************96 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.29   1.2e+02      92     113 ..     355     376 ..     349     384 .. 0.87
   2 !   14.4   0.0   3.2e-05     0.013      86     137 ..     974    1025 ..     967    1029 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.29
    AAA_PrkA  92 yllGPvggGksslverlkklle 113
                  l+G  g+Gks+l++ l ++++
  KIR65584.1 355 ALVGRTGSGKSTLAKVLTRAVD 376
                 599************9998876 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 3.2e-05
    AAA_PrkA   86 erkqilyllGPvggGksslverlkklleaapiyalegsPvfeePlhlipeel 137 
                  er q+++++GPvg+Gkssl  +l  +++++     +g Pv+e  + l p+++
  KIR65584.1  974 ERGQLVLVVGPVGSGKSSLLRALAGIVHHTGTLRWNGEPVTEPEVFLRPQQV 1025
                  678999*******************999999999999999998888878775 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.037        15       3      23 ..     356     376 ..     354     426 .. 0.71
   2 !   10.2   0.0    0.0018      0.75       1      35 [.     979    1014 ..     979    1044 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.037
                 EESSTTSSHHHHHHHHHHHHT CS
         AAA   3 lyGppGtGKTllakavakelg 23 
                 l+G  G GK++lak + + ++
  KIR65584.1 356 LVGRTGSGKSTLAKVLTRAVD 376
                 89*************999864 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0018
                  EEEESSTTSSHHHHHHHHHHHHT.HEEEEEETTTCS CS
         AAA    1 vllyGppGtGKTllakavakelg.vefleisgsell 35  
                  vl++Gp G GK++l +a+a  ++ +  l+ +g  ++
  KIR65584.1  979 VLVVGPVGSGKSSLLRALAGIVHhTGTLRWNGEPVT 1014
                  79*****************98752445666666555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.026        11     134     159 ..     356     380 ..     341     426 .. 0.82
   2 !    9.7   0.0   0.00095       0.4     122     155 ..     969    1002 ..     923    1007 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.026
       T2SSE 134 vsGgTgsGKttllyallkeinksder 159
                 + G TgsGK+tl+ +l   ++   + 
  KIR65584.1 356 LVGRTGSGKSTLAKVLTRAVDLP-RG 380
                 4699*********9998888766.44 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00095
       T2SSE  122 lrkavrerglilvsGgTgsGKttllyallkeink 155 
                  +   v++ +l+lv G+ gsGK+ ll al  ++++
  KIR65584.1  969 VDLTVERGQLVLVVGPVGSGKSSLLRALAGIVHH 1002
                  5667888899****************99988865 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0084       3.5       3      23 ..     354     374 ..     352     381 .. 0.85
   2 !    8.1   0.2    0.0057       2.4       2      21 ..     978     997 ..     977    1005 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0084
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                  +l G+ GsGK+tL++ l +a
  KIR65584.1 354 YALVGRTGSGKSTLAKVLTRA 374
                 5799***********988765 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0057
                 CEEEEC-TTTCHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkla 21 
                 lv++ G+ GsGK+ Ll+ la
  KIR65584.1 978 LVLVVGPVGSGKSSLLRALA 997
                 799**************998 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.4e-05     0.014       3      48 ..     947     998 ..     946    1004 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.4e-05
      AAA_27   3 lerLdLeryGkf.tdrsldfsa.....eeadlhliyGpNEAGKstalrAisd 48 
                 l+rL+L  +G + td +l+ +      e+ +l l++Gp  +GKs++lrA+  
  KIR65584.1 947 LRRLELAGFGALhTDGTLAVHDvdltvERGQLVLVVGPVGSGKSSLLRALAG 998
                 67899999998645655554443333399********************975 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0049       2.1       3      22 ..     356     375 ..     354     423 .. 0.88
   2 ?    4.9   0.0     0.082        34       1      23 [.     979    1001 ..     979    1024 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0049
  RNA_helicase   3 lyGpsgeGKStlakeLakal 22 
                   l+G++g GKStlak L++a+
    KIR65584.1 356 LVGRTGSGKSTLAKVLTRAV 375
                   79*************99987 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.082
  RNA_helicase    1 iwlyGpsgeGKStlakeLakall 23  
                    ++++Gp g GKS+l + La  + 
    KIR65584.1  979 VLVVGPVGSGKSSLLRALAGIVH 1001
                    5799************9987665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0      0.02       8.3      15      43 ..     344     372 ..     336     379 .. 0.81
   2 ?    6.5   0.1     0.012       4.9      24      47 ..     978    1001 ..     964    1006 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.02
  Mg_chelatase  15 leiaaaGgHnlllvGppGsGKtmlakrlp 43 
                   + ++ a g +  lvG  GsGK+ lak l+
    KIR65584.1 344 VSLTFARGRSYALVGRTGSGKSTLAKVLT 372
                   5666677778899*************986 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.012
  Mg_chelatase   24 nlllvGppGsGKtmlakrlpsllp 47  
                     +l+vGp GsGK+ l ++l++++ 
    KIR65584.1  978 LVLVVGPVGSGKSSLLRALAGIVH 1001
                    5899***************99975 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.066        28      57      77 ..     355     375 ..     340     425 .. 0.84
   2 ?    8.2   0.1    0.0029       1.2      54      81 ..     977    1004 ..     971    1008 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.066
      DUF815  57 LLwGarGtGKSslvkallney 77 
                  L+G  G+GKS+l k l++++
  KIR65584.1 355 ALVGRTGSGKSTLAKVLTRAV 375
                 599************999876 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0029
      DUF815   54 nnvLLwGarGtGKSslvkallneyaeeg 81  
                  + vL++G  G+GKSsl++al   ++++g
  KIR65584.1  977 QLVLVVGPVGSGKSSLLRALAGIVHHTG 1004
                  569****************998777765 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.011       4.4      15      44 ..     349     376 ..     337     382 .. 0.79
   2 ?    6.8   0.1     0.015       6.3      19      44 ..     976    1001 ..     961    1007 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.011
                 HHCHTEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE  15 akalgdvilLeGdLGaGKTtlvrglakalg 44 
                 a+  g+  +L G  G+GK+tl++ l +a++
  KIR65584.1 349 AR--GRSYALVGRTGSGKSTLAKVLTRAVD 376
                 33..66789****************99976 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.015
                  TEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE   19 gdvilLeGdLGaGKTtlvrglakalg 44  
                  g+++l  G++G+GK+ l r+la  ++
  KIR65584.1  976 GQLVLVVGPVGSGKSSLLRALAGIVH 1001
                  7789****************987665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       6.8   2.9e+03      49     107 ..      51      97 ..      49     126 .. 0.57
   2 ?    9.2   0.6     0.002      0.84      29      65 ..     348     385 ..     327     497 .. 0.77
   3 ?    9.9   0.0    0.0012       0.5      30      66 ..     973    1012 ..     965    1025 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 6.8
      AAA_25  49 laldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvld 107
                 la+ l++av+t+           g V+  ++ d  +++rrRl +v   +    +l+ l 
  KIR65584.1  51 LAVALCAAVVTDLT--------IGLVMAGVTADWSADVRRRLCRVALGQ----DLPTLE 97 
                 67777777777663........246777777777779999998887665....333333 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.002
      AAA_25  29 llpagelallaGapgtGKttlaldlalava..tGkpwlg 65 
                 + ++g   +l+G++g+GK+tla  l  av   +G  +lg
  KIR65584.1 348 F-ARGRSYALVGRTGSGKSTLAKVLTRAVDlpRGTVLLG 385
                 4.689999**************99988876555555555 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0012
      AAA_25   30 lpagelallaGapgtGKttlaldlalava..tGkpwlg.p 66  
                  + +g l+l++G+ g+GK+ l+  la  v       w g p
  KIR65584.1  973 VERGQLVLVVGPVGSGKSSLLRALAGIVHhtGTLRWNGeP 1012
                  679*******************999888773335566654 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.04        17      46      69 ..     350     373 ..     330     382 .. 0.83
   2 ?    6.3   0.0     0.017       7.3      44      68 ..     973     997 ..     964    1006 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.04
   IstB_IS21  46 kkenivllGpsGvGKshlaialgv 69 
                 +  + +l+G +G GKs la  l +
  KIR65584.1 350 RGRSYALVGRTGSGKSTLAKVLTR 373
                 556789*************98875 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.017
   IstB_IS21  44 iekkenivllGpsGvGKshlaialg 68 
                 +e+ + ++++Gp G GKs l  al+
  KIR65584.1 973 VERGQLVLVVGPVGSGKSSLLRALA 997
                 6888999*************99997 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2      0.21        88       3      22 ..     355     374 ..     353     387 .. 0.81
   2 ?    8.5   0.0    0.0053       2.2       2      23 ..     979    1004 ..     978    1021 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.21
      AAA_28   3 vitGgestGKTtlleaLaar 22 
                 +++G  ++GK+tl++ L++ 
  KIR65584.1 355 ALVGRTGSGKSTLAKVLTRA 374
                 789999*********99865 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0053
      AAA_28    2 ivitGgestGKTtlleaLa...ar.g 23  
                  + ++G+ ++GK++ll+aLa    + g
  KIR65584.1  979 VLVVGPVGSGKSSLLRALAgivHHtG 1004
                  7899***************7763343 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.012       5.2       7      28 ..     355     376 ..     350     391 .. 0.88
   2 ?    3.6   0.0      0.13        56       4      25 ..     977     998 ..     974    1028 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.012
  Ploopntkinase3   7 ylvGqPGaGkstlmaeltkgfd 28 
                      lvG  G+Gkstl   lt++ d
      KIR65584.1 355 ALVGRTGSGKSTLAKVLTRAVD 376
                     59****************9987 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.13
  Ploopntkinase3   4 rliylvGqPGaGkstlmaeltk 25 
                     +l+ +vG  G+Gks l+ +l+ 
      KIR65584.1 977 QLVLVVGPVGSGKSSLLRALAG 998
                     68999***********999875 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.044        18      43      59 ..     355     371 ..     342     374 .. 0.86
   2 ?    6.4   0.1     0.012         5      41      59 ..     978     996 ..     954     998 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.044
                   EEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  43 lvaGatgsGKStalntL 59 
                    ++G+tgsGKSt  ++L
    KIR65584.1 355 ALVGRTGSGKSTLAKVL 371
                   579*********87665 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.012
                   SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  41 hllvaGatgsGKStalntL 59 
                    +lv+G  gsGKS  l++L
    KIR65584.1 978 LVLVVGPVGSGKSSLLRAL 996
                   489**************98 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.046        19       6      22 ..     356     372 ..     352     376 .. 0.89
   2 ?    5.9   0.0     0.024        10       4      23 ..     979     998 ..     976    1026 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.046
   PduV-EutP   6 liGkvgsGKttLtqalk 22 
                 l+G++gsGK tL++ l+
  KIR65584.1 356 LVGRTGSGKSTLAKVLT 372
                 89***********9986 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.024
   PduV-EutP   4 illiGkvgsGKttLtqalkg 23 
                 +l++G+vgsGK +L +al g
  KIR65584.1 979 VLVVGPVGSGKSSLLRALAG 998
                 899**************987 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0037       1.6      23      56 ..     353     386 ..     340     437 .. 0.76
   2 ?    2.6   0.0      0.13        53       8      41 ..     963     996 ..     958    1006 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0037
      AAA_10  23 asliiGdlGnGKSvlakllvlyisllggkaliiD 56 
                   +++G +G GKS lak+l   + l  g +l+ D
  KIR65584.1 353 SYALVGRTGSGKSTLAKVLTRAVDLPRGTVLLGD 386
                 4599***************999999888877655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.13
      AAA_10   8 llanqevkgsktnasasliiGdlGnGKSvlakll 41 
                 +la ++v+ ++++   +l++G++G GKS l + l
  KIR65584.1 963 TLAVHDVDLTVERGQLVLVVGPVGSGKSSLLRAL 996
                 57778888889999999***********998876 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.18        74       2      19 ..     357     374 ..     356     383 .. 0.84
   2 ?    8.5   0.1    0.0037       1.6       1      24 [.     981    1004 ..     981    1006 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.18
  ATP_bind_1   2 vGpaGsGKttfvgalsei 19 
                 vG  GsGK+t+ + l+  
  KIR65584.1 357 VGRTGSGKSTLAKVLTRA 374
                 899********9988765 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0037
  ATP_bind_1    1 vvGpaGsGKttfvgalseilelrg 24  
                  vvGp+GsGK+++ +al+ i++ +g
  KIR65584.1  981 VVGPVGSGKSSLLRALAGIVHHTG 1004
                  89**************99988775 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0065       2.7       3      38 ..     352     384 ..     350     496 .. 0.81
   2 ?    2.9   0.0      0.19        81       5      22 ..     979     996 ..     975    1005 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0065
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfidtekGlksl 38 
                 ++++++G  g+GK+tlak l   +  +d+ +G+  l
  KIR65584.1 352 RSYALVGRTGSGKSTLAKVL---TRAVDLPRGTVLL 384
                 6789**************99...3333444444333 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.19
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l++Gp g+GK++l++ l
  KIR65584.1 979 VLVVGPVGSGKSSLLRAL 996
                 89************9876 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0       0.1        42      26      43 ..     354     371 ..     340     374 .. 0.77
   2 ?    6.4   0.0     0.015       6.1      24      43 ..     976     996 ..     965    1002 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.1
      AAA_15  26 tvliGkNnsGKSsileal 43 
                   l+G+ +sGKS+++++l
  KIR65584.1 354 YALVGRTGSGKSTLAKVL 371
                 589************998 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.015
      AAA_15  24 e.ltvliGkNnsGKSsileal 43 
                   l +++G+ +sGKSs+l+al
  KIR65584.1 976 GqLVLVVGPVGSGKSSLLRAL 996
                 2599****************9 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.028        12       5      23 ..     358     376 ..     355     381 .. 0.87
   2 ?    4.2   0.0     0.084        35       3      20 ..     981     998 ..     979    1010 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.028
                 ESTTSSHHHHHHHHHCCST CS
         dNK   5 GnIgaGKstlvklLskklg 23 
                 G  g+GKstl+k+L+++++
  KIR65584.1 358 GRTGSGKSTLAKVLTRAVD 376
                 889***********99876 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.084
                 EEESTTSSHHHHHHHHHC CS
         dNK   3 veGnIgaGKstlvklLsk 20 
                 v G++g+GKs+l+  L+ 
  KIR65584.1 981 VVGPVGSGKSSLLRALAG 998
                 77***********99975 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       9.5     4e+03      59     111 ..     180     232 ..     157     239 .. 0.73
   2 ?    3.9   0.0     0.091        38       2      23 ..     355     376 ..     354     379 .. 0.84
   3 ?    5.0   0.1     0.043        18       4      19 ..     982     997 ..     979    1003 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 9.5
                     T--EEEEEEEEEETTEE-TTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTT-B CS
  Cytidylate_kin  59 evelsfeaekvllngedveeelrsdevekavSavaaipavRailvkklrelvk 111
                      ++l    e+++ ++ dv ++l    v ++    aa+  vR +lv ++ + v+
      KIR65584.1 180 WTDLAAVMEEAVHGQDDVRTSLARPYVLRLFARRAATVLVRGNLVWRMSAWVT 232
                     45555566677888889999999999999999999999999998888877665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.091
                     EEE-STTSSHHHHHHHHHHHHT CS
  Cytidylate_kin   2 aiDGPagsGKssvaralaeklg 23 
                     a+ G +gsGKs++a+ l++ ++
      KIR65584.1 355 ALVGRTGSGKSTLAKVLTRAVD 376
                     566889***********98765 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.043
                     E-STTSSHHHHHHHHH CS
  Cytidylate_kin   4 DGPagsGKssvarala 19 
                      GP gsGKss+ rala
      KIR65584.1 982 VGPVGSGKSSLLRALA 997
                     59************99 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.28   1.2e+02       3      40 ..     336     371 ..     335     377 .. 0.77
   2 ?    6.8   0.0     0.014       5.8      18      41 ..     974     997 ..     965    1005 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.28
    ATPase_2   3 dRekelkeleeilerepneiyfiYGpegsGKtaLlkei 40 
                 dR  +l+++     r+  + y + G+ gsGK++L k +
  KIR65584.1 336 DRAPALRDVSLTFARG--RSYALVGRTGSGKSTLAKVL 371
                 6777777777777774..456777**********9875 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.014
    ATPase_2  18 epneiyfiYGpegsGKtaLlkeii 41 
                 e+ + +++ Gp gsGK++Ll+ ++
  KIR65584.1 974 ERGQLVLVVGPVGSGKSSLLRALA 997
                 456789999***********9865 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.34   1.4e+02       3      23 ..     354     374 ..     352     376 .. 0.89
   2 ?    6.6   0.0     0.013       5.3       3      43 ..     979    1021 ..     977    1036 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.34
                 EEEEESTTSSHHHHHHHHHTT CS
      FeoB_N   3 valvGnpnvGkttlfnaltga 23 
                  alvG   +Gk+tl   lt a
  KIR65584.1 354 YALVGRTGSGKSTLAKVLTRA 374
                 69*************999975 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.013
                  EEEEESTTSSHHHHHHHHHTTSEEEEE..STTSSSEEEEEEEE CS
      FeoB_N    3 valvGnpnvGkttlfnaltgakqkvgN..wpGvtvekkegklk 43  
                  v +vG   +Gk++l+ al+g  ++ g   w G  v + e+ l+
  KIR65584.1  979 VLVVGPVGSGKSSLLRALAGIVHHTGTlrWNGEPVTEPEVFLR 1021
                  6799********************9954499998888777766 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0082       3.4      24      42 ..     355     373 ..     350     380 .. 0.85
   2 ?    1.0   0.1      0.47     2e+02      21      39 ..     977     995 ..     969    1005 .. 0.83
   3 ?   -3.1   0.0       8.6   3.6e+03      95     114 ..    1095    1114 ..    1089    1126 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0082
                 EEEESTTSSHHHHHHHHCC CS
      NB-ARC  24 alvGmgGvGKttlakqiln 42 
                 alvG+ G+GK+tlak   +
  KIR65584.1 355 ALVGRTGSGKSTLAKVLTR 373
                 79************97655 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.47
                 EEEEEEESTTSSHHHHHHH CS
      NB-ARC  21 lvvalvGmgGvGKttlakq 39 
                  +v +vG  G+GK+ l++ 
  KIR65584.1 977 QLVLVVGPVGSGKSSLLRA 995
                 47899*********99875 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 8.6
                  HHHHHCCCTTEEEEEEEE-S CS
      NB-ARC   95 klvrlLltkrfllvlDDVwe 114 
                   l r+L  +  llv DDV  
  KIR65584.1 1095 ALARALAPRTELLVADDVSS 1114
                  5889999999*******965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        43  (0.00239835); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              43  [number of targets reported over threshold]
# CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.44
# Mc/sec: 7970.18
//
Query:       KIR65585.1  [L=355]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-70  237.0   0.0    4.2e-70  236.7   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.7   0.0   2.4e-74   4.2e-70       1     339 [.       3     341 ..       3     343 .. 0.92

  Alignments for each domain:
  == domain 1  score: 236.7 bits;  conditional E-value: 2.4e-74
                   CCCS-EEETTEEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEE CS
  Oxidored_FMN   1 kLFkPikignmtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvv 97 
                   +LF+P+ +  +tL nR++ apm++++a ++g  ++d+   +   ra ++ +l+ tea++v p++++ +++ g+w++ ++ +wr++t  v ++g+  +
    KIR65585.1   3 SLFTPLALRAVTLPNRVALAPMCQYSAGPDG-LPTDWHRVHLGSRAVGGAGLVLTEATAVVPEGRISPQDVGLWSDAHVDAWRPVTAFVAAQGAVPA 98 
                   59*****************************.9999************************************************************* PP

                   EEEE--GGGS..SCSTCEC.........SS.ESSSSSTTT-.S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT CS
  Oxidored_FMN  98 vqlwhlGreakseyladqe.......vdspsdpvaldaqeeesaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspks 187
                   vql+h+G +a s y++ +         ++   pv+ +a+ +    ++++ +l++  i+ ++++f+ AA ra++Agf  Veih+a+GYLl++Flsp +
    KIR65585.1  99 VQLAHAGFKA-STYRPWAPrrggvpdAEGGWTPVGPGAEPF-VPDYRVPTALDEAGIAGVVEAFATAAGRAVDAGFAAVEIHAAHGYLLHEFLSPLT 193
                   **********.677777666889999899999999999977.44455599*********************************************** PP

                   ----STTSSSHHHHHHHHHHHHHHHHHHH-SSS.EEEEEECE--STTS--HHHHHHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCCTT.H CS
  Oxidored_FMN 188 nkrtDeygGslenRarFllevvdaVkeavgeer.vgyRlSpedvvekgldfaetaqkivllkelekrlkdgkklalvhaaeprkrgagsvrteqe.k 282
                   n+rtD +gG+   R+r +lev +aV+  vge   v +R+S+ d +e g ++ +    + +l++ +++l d +++  +  a        +v   ++  
    KIR65585.1 194 NHRTDGWGGDRAGRMRLALEVARAVRATVGESVpVLTRISATDWTEGGWTVEDSVVLAGELAAAGVDLVDASSGGAAPRA------TIPVGPGYQvP 284
                   ******************************************99999999999977788888888888877777666333......34555666655 PP

                   HHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCT CS
  Oxidored_FMN 283 ntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkgl 339
                    +  ++  + +++ +vg i ++e+a++iva geadLv +gRe+l+dp ++++++ +l
    KIR65585.1 285 LAARIRREAGVATGAVGLIVEPEQAEQIVAGGEADLVLLGRELLRDPYWPRRAAAKL 341
                   6899************************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 2290.28
//
Query:       KIR65586.1  [L=401]
Description: beta-ketoadipyl CoA thiolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-72  244.3   0.1    1.8e-72  243.8   0.1    1.1  1  Thiolase_N     Thiolase, N-terminal domain
    1.8e-41  140.6   0.2    3.1e-41  139.9   0.2    1.4  1  Thiolase_C     Thiolase, C-terminal domain
    5.9e-05   22.8   0.5    5.9e-05   22.8   0.5    1.8  2  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.8   0.1     3e-76   1.8e-72       2     259 ..       5     267 ..       4     268 .. 0.89

  Alignments for each domain:
  == domain 1  score: 243.8 bits;  conditional E-value: 3e-76
                 EEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHT.S-GGGCCEEEEEHSSCTTSTSC.HHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHH CS
  Thiolase_N   2 vivsaartpigkfggslkdlsaeeLlaealkallekag.vdpeevdevivGnvlqagegqn.iarqaalkagipeevpavtvnkvcsSglkavalaaqs 98 
                 ++v+++rtpig++ g+l+ ++ ++L+a+++++l+++ + vd + vd+v++G+  qage++  +ar+aal ag+p evp +tvn++c+Sgl+a+a+aa++
  KIR65586.1   5 YLVAGVRTPIGRYAGALAGVRPDDLAAHVIRELVARHPsVDWARVDDVVLGCANQAGEDNRnVARMAALLAGLPGEVPGSTVNRLCGSGLDALATAARQ 103
                 579*****************************************************665544************************************* PP

                 HHTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTT.....SEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTT CS
  Thiolase_N  99 iaageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafne.....ehmGltaenlakkykisReeqdefAvkshqkaaaaqkagk 192
                 + agea+ vvagGvEsms+ap +++ ++ +  +  ++++ d++i   l++   e       m  taen+a++++++R +qd+fA +s+q+aa+aq++g+
  KIR65586.1 104 VVAGEAELVVAGGVESMSRAPFVMP-KATAAFS-RAAEVYDTTIGWRLVNPLMErgwgiDSMPETAENVAAEFGVDRAAQDAFAYRSQQRAAKAQADGR 200
                 ***********************99.4444443.334444444443344443330111257888*********************************** PP

                 TTTTBE-EEEEESSSE.EEE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 193 FkdeivPvkvkgkkgk.ktvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmse 259
                 F++eivPv+v+  + + k vd de++r+ +t+ kLa+l + F++ GtvtAgn+s+++DGa a+l++ e
  KIR65586.1 201 FAEEIVPVTVPAGRREtKLVDVDEHPRE-TTLPKLAALPTPFRDGGTVTAGNSSGVNDGAVALLVAGE 267
                 ***********9988889*********9.***********************************9865 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.9   0.2   5.2e-45   3.1e-41       2     122 ..     276     398 ..     275     399 .. 0.96

  Alignments for each domain:
  == domain 1  score: 139.9 bits;  conditional E-value: 5.2e-45
                 --SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--G..GGBSTT--HHHH-B-TTTHHHHHHHHHHHHHH CS
  Thiolase_C   2 kplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldl..ekvNvnGGaialGHPlGasGaRivvtllselk 98 
                 +pla+++  a +gv+p+i+g+gP++a++++l++ g+ ++ +d++E+nEAFaaq +av+++ +l +  e+vN nGGaialGHPlGasGaR++ t++ el+
  KIR65586.1 276 TPLARVTGAAAAGVPPRIMGIGPVPATRRLLDRLGVGLDAVDVIELNEAFAAQSVAVLREWGLPEdaEHVNPNGGAIALGHPLGASGARLALTAALELR 374
                 89**********************************************************99865449******************************* PP

                 HCTTSEEEEEEEETTTEEEEEEEE CS
  Thiolase_C  99 keggklgvaalCigggqgvalvie 122
                 +++++ ++a++C g gqg+al++e
  KIR65586.1 375 RRDARRALATMCVGVGQGIALMLE 398
                 *********************997 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.5   9.9e-09   5.9e-05     170     213 ..      85     127 ..      59     144 .. 0.78
   2 ?   -3.4   0.1      0.93   5.5e+03      90     107 ..     260     277 ..     252     289 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 9.9e-09
                    EEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SHHHHHH CS
  ketoacyl-synt 170 tvdtACsSslvavhaavqslrsgeadvalaGGvellltpeavag 213
                    tv   C S+l a++ a +++++gea++++aGGve +     +++
     KIR65586.1  85 TVNRLCGSGLDALATAARQVVAGEAELVVAGGVESMS-RAPFVM 127
                    56667*****************************654.444444 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.93
                    HHHHHHHHHHHHHHTS-H CS
  ketoacyl-synt  90 rllleaawealedagltp 107
                      ll+a + a++++gltp
     KIR65586.1 260 VALLVAGEAAVARYGLTP 277
                    567888888899999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2804.08
//
Query:       KIR65587.1  [L=166]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-28   97.6  29.1    7.4e-28   97.6  29.1    1.5  2  DUF456    Protein of unknown function (DUF456)


Domain annotation for each model (and alignments):
>> DUF456  Protein of unknown function (DUF456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.5      0.31   5.6e+03     127     131 ..      14      18 ..       6      25 .. 0.38
   2 !   97.6  29.1   4.1e-32   7.4e-28       1     137 [.      26     161 ..      26     163 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.31
      DUF456 127 lallm 131
                 +al++
  KIR65587.1  14 AALAI 18 
                 11111 PP

  == domain 2  score: 97.6 bits;  conditional E-value: 4.1e-32
      DUF456   1 vvPvLPGtllilaglllyalltgfaelgwlflavllvlallglvldylapalgakraGaskrgligaivGaivGffllpplGlllgpflgaflgEllra 99 
                 +vP+LP+++l+++g+l++a++    +  wl+la+++v+a+ g v++yl+p++ +k aG+++++l++++v ++vGff++p++Gl++g+++g++ +E+lr 
  KIR65587.1  26 IVPGLPALPLCWGGVLVWAIFGTAGAGRWLVLAAATVVAVGGAVVKYLWPGRNLKNAGVPTSSLLAGGVLGLVGFFVIPVVGLVVGFVGGIWGAERLRL 124
                 79*****************99888889************************************************************************ PP

      DUF456 100 rkdlreAlkaalgalvGfllgtlvklvlallmlvlflv 137
                 + + + A+ ++++al++ +l++lv+++++l++++l++ 
  KIR65587.1 125 G-SNQLAWPSTVHALKAAGLSMLVEFLAGLVIAALWVG 161
                 *.999*******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1178.21
//
Query:       KIR65588.1  [L=62]
Description: hypothetical protein TK50_09420 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-23   80.4   0.6      8e-23   80.3   0.6    1.0  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.6   4.5e-27     8e-23       1      54 []       6      60 ..       6      60 .. 0.89

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 4.5e-27
      DUF397  1 atWrKSsySgggggnCVEvaalpda......vavRDSkdpdgpvLtftpaewaaFlagvk 54
                a+W KS++S+ +gg+CVEv     a      vavRDSkdp+gpvL+f+p+ w+aF+++ k
  KIR65588.1  6 ANWKKSTRSNTAGGECVEV-----AdnltgvVAVRDSKDPSGPVLAFSPQTWRAFVEHTK 60
                68*****************.....444455689***********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 406.27
//
Query:       KIR65589.1  [L=265]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-11   44.8   0.6    1.2e-11   44.8   0.6    2.8  2  HTH_31    Helix-turn-helix domain
    1.1e-08   34.9   0.1    2.6e-08   33.8   0.1    1.6  1  HTH_3     Helix-turn-helix
    8.3e-05   22.5   0.0    0.00016   21.7   0.0    1.5  1  HTH_19    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.056   13.4   0.5       0.15   12.0   0.0    1.9  2  HTH_37    Helix-turn-helix domain
       0.08   12.7   0.7       0.08   12.7   0.7    1.7  2  HTH_38    Helix-turn-helix domain
      0.093   12.7   0.1          2    8.4   0.0    2.3  2  MarR      MarR family


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.6   4.1e-15   1.2e-11       5      57 ..      13      64 ..      10      72 .. 0.95
   2 ?   -0.6   0.6       0.6   1.8e+03      33      50 ..     136     155 ..     114     181 .. 0.57

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 4.1e-15
      HTH_31  5 lLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                +Lr+ R++aGL qee+++r+++s+st+s +E+G+r+    a + ++ ++l++ 
  KIR65589.1 13 QLRRIRTAAGLNQEELGRRANYSASTISAVETGTRP-LDKAYVKRMDEVLDTG 64
                8**********************************7.*************985 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.6
      HTH_31  33 rlEqGrrgrp...spavleal 50 
                 rlE+ ++ ++   +p+v++ +
  KIR65589.1 136 RLERQEI-LVrehPPQVIAVI 155
                 5555555.4422222233333 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   8.7e-12   2.6e-08       1      50 [.      14      63 ..      14      65 .. 0.96

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 8.7e-12
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTS CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgv 50
                l+++R ++gl qeeL ++++ s stis+ E G r  +   +k++ ++L++
  KIR65589.1 14 LRRIRTAAGLNQEELGRRANYSASTISAVETGTRPLDKAYVKRMDEVLDT 63
                89******************************************999985 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   5.2e-08   0.00016       4      40 ..      14      49 ..      13      80 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 5.2e-08
      HTH_19  4 LkeaReelgltqeelaerlgisrskisaiEngkkdvp 40
                L+++R  +gl+qeel +r+  s s isa E+g +  +
  KIR65589.1 14 LRRIRTAAGLNQEELGRRANYSASTISAVETGTR-PL 49
                8*******************************76.44 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.2e-05      0.15      17      72 ..       7      65 ..       2      66 .. 0.85
   2 ?   -1.5   0.1      0.84   2.5e+03      22      37 ..     146     165 ..     120     177 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.2e-05
                HHHHHH.HHHHHHHCT--HHHHHHHHT--HHHHHHHHTT-..-TT--HHHHHHHHHHTT CS
      HTH_37 17 aqlala.iaeliekrelsqseaaqllgiaqPkvsrllrgk..lsrfsldkLlnlltalG 72
                a+l+++ +++++ + +l q+e+ ++ +++ + +s+++ g   l++ ++++++++l+  G
  KIR65589.1  7 ADLIRTqLRRIRTAAGLNQEELGRRANYSASTISAVETGTrpLDKAYVKRMDEVLDTGG 65
                6677777*****************************99854488889999888887655 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.84
                 H....HHHHHHHCT--HHHH CS
      HTH_37  22 a....iaeliekrelsqsea 37 
                 +    ++++i++  l+ ++a
  KIR65589.1 146 EhppqVIAVIDEAALRRTDA 165
                 25555667777776666665 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.7   2.7e-05      0.08      16      38 ..      17      40 ..      11      41 .. 0.84
   2 ?   -2.8   0.1       1.9   5.6e+03      24      32 ..     131     139 ..     131     143 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.7e-05
      HTH_38 16 ll.aeGlslreIArrLgrspsTIs 38
                 + a+Gl++ e +rr ++s sTIs
  KIR65589.1 17 IRtAAGLNQEELGRRANYSASTIS 40
                44389******************8 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.9
      HTH_38  24 reIArrLgr 32 
                 r++A rL r
  KIR65589.1 131 RQVAARLER 139
                 567777766 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00068         2       9      36 ..      14      41 ..      12      43 .. 0.94
   2 ?    1.7   0.0     0.082   2.4e+02      37      54 ..     133     150 ..     132     150 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00068
                HHHHHHSTTEEHHHHHHHHTS-HHHHHH CS
        MarR  9 LrilyeqgplsvseLakklgvskstvtr 36
                Lr +++  +l++ eL+++ + s st++ 
  KIR65589.1 14 LRRIRTAAGLNQEELGRRANYSASTISA 41
                899***********************96 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.082
                 HHHHHHHTTSEEEEEETT CS
        MarR  37 vldrLekkGlieRskspe 54 
                 v+ rLe+++ + R++ p+
  KIR65589.1 133 VAARLERQEILVREHPPQ 150
                 678***********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2152.29
//
Query:       KIR65590.1  [L=85]
Description: hypothetical protein TK50_09430 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 690.09
//
Query:       KIR65591.1  [L=90]
Description: hypothetical protein TK50_09435 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 731.49
//
Query:       KIR65592.1  [L=94]
Description: hypothetical protein TK50_09440 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 731.91
//
Query:       KIR65593.1  [L=530]
Description: amino acid permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-54  184.0  49.1    5.5e-54  183.6  49.1    1.0  1  AA_permease_2  Amino acid permease
    5.2e-24   84.7  40.8    6.8e-24   84.3  40.8    1.0  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.6  49.1   6.1e-58   5.5e-54       4     422 ..      36     486 ..      34     494 .. 0.79

  Alignments for each domain:
  == domain 1  score: 183.6 bits;  conditional E-value: 6.1e-58
  AA_permease_2   4 lsafalvigsvigsgifvkn...laasggpalilwvwiavligslavllvyaEl.ssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasi 95 
                    +s fa++++++  +++ +++   + ++ggp++i w+w  + +++l  ++++aEl s+  p+ gGiy++++++  ++++++++w+n+++ v+v+as+
     KIR65593.1  36 FSNFAISFSIISILAGCFTTfgqAWNNGGPVAISWGWPLISLFILVIGFCLAELvSA-YPTAGGIYWWAAKMGRPVHGWFTGWLNLIGLVAVTASV 130
                    789999999995544444545746666**********9999999**********877.************************************** PP

  AA_permease_2  96 lsvaasyl...lnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl......stetdtf 182
                     + +a +l   l+al+  + g+  ++++++++il+l+ lini+g ++++ +qn+ +++++ +  +++ il+++   ++ f++           +  
     KIR65593.1 131 DYGCATFLnltLSALFDGWAGTLRQAFVLFVIILALHGLINIFGHRIIDVLQNVSVWWHVAGAAAVVAILVFVPEEHQSFQFVfterfdNSGFGDG 226
                    99999999544555555555556699**********************************988777777777776555555448755443333346 PP

  AA_permease_2 183 fpngwpg..v..llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpd.deianlsnlgsvaalffeavggkv 271
                     ++gw++  +   lg+l ++++++Gf+++a+vsee +   k +  ++  ++ +++v ++ + +afl++ +d d i+  ++   + ++ fe++  ++
     KIR65593.1 227 GTGGWTFwfYvlPLGFLLTQYTITGFDACAHVSEETRGasKAAAQGLWRSIFYSAVGGWILLLAFLFAATDvDAINAAGG---FSGAIFETALTPF 319
                    666999753233559999*****************9966699*****************************666666555...56777777777** PP

  AA_permease_2 272 vaiivvilialsllgaintavigssrvlealardgvlP..rffakvnkfgspiraiiltaivslillllfllas....saaynfllsvsslgliis 361
                    ++  v+i+ +++ +++++++v+++sr+++a++rd++ P  r ++kv+++g+p++ai+   +  l+l+l  l+ s      a+++++sv+++gl++s
     KIR65593.1 320 FFKTVIIVSTIGQFFCGMSCVTSMSRMAYAFSRDRAVPgwRLWSKVDRNGTPVNAIVGATVAGLVLTLPALYESpsgiPVAFYAVVSVAVIGLYLS 415
                    ***************************************************************999888885445556689*************** PP

  AA_permease_2 362 yllliigalilrkkrphl....krpgk.....ilvaiigalfllfllvalffppkgpa.tqssliytiilt 422
                    + ++i+++l   ++        +r +k     ++v i ++ + ++l ++++ +p  ++  +s ++y+ + +
     KIR65593.1 416 FVIPIVLRLRMGDRFTPGpwtlGRRYKvlgwvAVVEIAIISVYFVLPIVPAGVPGHADfSWSAVNYAPLAV 486
                    *****999988766442212334533334421233333333333333555555555557888899994333 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3  40.8   7.6e-28   6.8e-24      13     471 ..      50     503 ..      41     507 .. 0.76

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 7.6e-28
  AA_permease  13 tglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasiliqfwelvtdl 110
                  +g+f+  g + +++Gp+++  ++ l+ ++i+ ++ +l+e+++++p +gg+y +a++   p  G+++G++ l+  ++v a    +++ ++++   +++l
   KIR65593.1  50 AGCFTTFGQAWNNGGPVAISWGWPLISLFILVIGFCLAELVSAYPTAGGIYWWAAKMGRPVHGWFTGWLNLIGLVAVTASVDYGCATFLNLT--LSAL 145
                  79*******************************************************************44444444333334444444444..6666 PP

  AA_permease 111 pkawvt..........gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeegaf 198
                  +  +++           +++l++  +in++g +     + +  +  +  ++a++ +++++  + +  ++  f+   dn++     +++g ++  +++f
   KIR65593.1 146 F--DGWagtlrqafvlFVIILALHGLINIFGHRIIDVLQNVSVWWHVAGAAAVVAILVFVPEEHQSFQF-VFTERFDNSG-----FGDGGTGGWTFWF 235
                  6..66666889988878889999999*************999999999999999999666666665666.4555555555.....5777667789999 PP

  AA_permease 199 knfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfv.ifikesgvsvlaplinav 295
                  +    +f     ++tG+ + a +++E++  +k+   +  + +++ ++   + +ll+ +l+  +d + +n  a  a++f   +++ +  +++  ++++v
   KIR65593.1 236 YVLPLGFLLTQYTITGFDACAHVSEETRGASKAAAQGLWRSIFYSAVG--GWILLLAFLFAATDVDAIN--A--AGGFSgAIFETALTPFFFKTVIIV 327
                  999999999999999999999999999998887777766666665554..4566666777777777777..2..344541566777788888899999 PP

  AA_permease 296 iltaalssansslysasRvlyslakdglaP..kvlkkvskrgvPlraillsmiisllalllaslnlaa.pivfnfllaisaligl.ivwlliilsylr 389
                  + +  +++++s+++s+sR+ y++++d++ P  +  +kv+++g P++ai+  ++++l++ l a + ++    v  +++ ++a+igl + +++ i+  lr
   KIR65593.1 328 STIGQFFCGMSCVTSMSRMAYAFSRDRAVPgwRLWSKVDRNGTPVNAIVGATVAGLVLTLPALYESPSgIPVAFYAVVSVAVIGLyLSFVIPIVLRLR 425
                  999999*************************999*************************766665553123444444555555552456666666666 PP

  AA_permease 390 fRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvk 471
                  +   +    + +  lg +  +l + +++ +a+++ ++++  + a ++ +  + +w+a++ a + ++ +l+++   ++  + k
   KIR65593.1 426 MGDRFTPGPW-T--LGRRYKVLGWVAVVEIAIISVYFVLPIVPAGVP-GHADFSWSAVNYAPLAVGGVLLVVAVWWYASARK 503
                  6666444444.4..888888888888888888888888888888888.6666699999999999998887777666654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 4105.26
//
Query:       KIR65594.1  [L=454]
Description: glutamine synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-99  333.5   0.0    1.5e-99  333.3   0.0    1.0  1  Gln-synt_C    Glutamine synthetase, catalytic domain
    0.00019   21.2   0.0    0.00039   20.2   0.0    1.5  1  Gln-synt_N_2  Glutamine synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.3   0.0  1.7e-103   1.5e-99       2     344 ..     120     449 ..     119     450 .. 0.96

  Alignments for each domain:
  == domain 1  score: 333.3 bits;  conditional E-value: 1.7e-103
                 T-HHHHHHHHHHHHHHTTCEEEEEEEEEEEEESEECCCESSEEEEEEE.TB...B.TSS-TTBHCCCCCTCCHHHHHHHHHHHTT--EECCEEECCCTE CS
  Gln-synt_C   2 rdPRsvlkralarlaeeGltvvvgpElEFflfdkeedkeasksllevdseekgrpaekggyfsvapvdeaedlrreivealealgieveashhEvatgQ 100
                 ++PR++l+r+l+rla++Glt+++g+ElEF+l ++  +++ +++ ++  ++    +++ +  +s+  ++++e+l+r+i + ++ +g++ e+++ E++ gQ
  KIR65594.1 120 ASPRQILRRQLDRLAAHGLTAYAGTELEFVLYRDSYEDA-WRRGYRELTP----ANQYNVDYSLLGTSRVEPLLRRIRTEMAGAGLTPESAKGECNLGQ 213
                 58******************************9988866.6777766665....466777899999********************************* PP

                 EEEEE--EECHHHHHHHHHHHHHHHHHHHHTT-EEE-SSSSSTTS---BEEEEEEEEECTTEESSB-TTSGGGB-HHHHHHHHHHHHHHHHHHHHHS-S CS
  Gln-synt_C 101 vEinlkfadalkaaDnvvtfKrvvkevArkhgltatFmpKplegdnGsgmHvhlSlwdkdgknlfadeddeyalselarhfigGllkhakaltaltapt 199
                 +Ei +++++a++ aD++v++K+ +ke+A+++g+++tFm+Kp + ++G+++H+h+Sl d+dg+ ++ +++ + +ls +++ +++Gll++++++++l+ap+
  KIR65594.1 214 HEIAFRYDEAVACADHHVIYKNGAKEIAAQEGMSITFMAKPNA-REGNSCHIHFSLRDADGRSAMLGDG-PAHLSVTGQRVLAGLLDTMREFSLLFAPN 310
                 *****************************************98.89********************997.789************************** PP

                 CCHHHHCSSSTTSSSBEEEESS-TTCSEEEE-TSGGCSTEEEECEBTTS-HHHHHHHHHHHHHHHHHTT--------S-SSSS-TTTHTSS-B--SSHH CS
  Gln-synt_C 200 vnSYkRlvpgyeaPvalawgarNRsallRipaskekakrvElRlpdasaNPYLalAallaAgldGienklepgepvekdlyelspeerkgieelPasle 298
                 vnSYkR++pg+ aP+al wg++NR+++lR +  ++++ rvE+R+p+a++NPYLa+Aal+a++++Gie++le+ge++++++y+ +++e     ++P +l+
  KIR65594.1 311 VNSYKRYQPGSFAPTALRWGTDNRTCALRLVG-HGQGMRVENRVPGADVNPYLAIAALVAGAVHGIERELELGEECTGNAYDDPAAE-----RVPGTLR 403
                 *******************************9.999*************************************************98.....6****** PP

                 HHHHHHHCSHHHCCSS-HHHHHHHHHHHHHCHHHHHCT--HHHHHH CS
  Gln-synt_C 299 eAlealeedellkevlgeevieaylalkraEleeleeevsdweler 344
                 +Al  +e+++++++v+g+ev ++y ++ r El++++++v+dwel+r
  KIR65594.1 404 DALGLWESSTIARAVFGDEVHAHYANMARVELRAFDAAVTDWELQR 449
                 *******************************************986 PP

>> Gln-synt_N_2  Glutamine synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   4.3e-08   0.00039      22     105 ..      27     115 ..      13     117 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.3e-08
                   EE-TTS-EEEEEEE....GGGHHHHHTT-EEE-GGG.GG--TTS---TT-S-SSS--EEEEE-GGG-EEE---SSTTSEEEEEE-TTS- CS
  Gln-synt_N_2  22 yvdlaGvtrGkalp....lasLeekLasGiGltkat.lalserdlidevedlgpvGelrLvpdPasavalpyaPdaaallgdlvevdgt 105
                    vd++G  +Gk       l ++ e+  +G+ +  a  + +++ d    ++     G+  +vpd  +  ++p  P++a ll+dl  +dg+
    KIR65594.1  27 LVDMQGRLQGKRFHapffLDQVVENGSEGCNYLLAVdVDMNTVDGYAMSSWERGYGDFAMVPDLETLRRVPWQPGTAMLLADLAWLDGS 115
                   567777777776651111344555556899998875389******999999999*********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3483.80
//
Query:       KIR65595.1  [L=255]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-74  248.7   1.7    6.3e-74  248.4   1.7    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.4e-53  181.3   0.1    1.7e-53  181.0   0.1    1.1  1  adh_short        short chain dehydrogenase
    1.3e-07   31.7   1.0    3.4e-07   30.4   1.0    1.7  1  KR               KR domain
    1.7e-06   27.7   0.5    4.3e-06   26.4   0.3    1.6  2  Epimerase        NAD dependent epimerase/dehydratase family
    0.00083   19.8   6.0      0.041   14.3   0.2    2.3  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
     0.0084   16.8   0.2      0.015   16.0   0.2    1.5  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.012   15.1   0.2      0.018   14.6   0.2    1.3  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
      0.033   14.1   2.7      0.036   13.9   1.0    2.0  3  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.045   13.7   1.1       0.12   12.4   1.1    1.7  1  ADH_zinc_N       Zinc-binding dehydrogenase
      0.046   14.0   0.4        0.1   12.8   0.4    1.6  1  TrkA_N           TrkA-N domain
      0.084   13.5   0.6        0.2   12.4   0.6    1.7  1  Methyltransf_11  Methyltransferase domain
        0.1   12.0   0.2       0.18   11.1   0.2    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.4   1.7   4.2e-77   6.3e-74       1     234 []      14     248 ..      14     248 .. 0.96

  Alignments for each domain:
  == domain 1  score: 248.4 bits;  conditional E-value: 4.2e-77
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   Ga sgIG a+A+++a+eGa+vv++d++ +a    e++a+e+g e+++cDV+de++v++l++ v++++g++D+++nnagi+p+ + ++let  + ++r
    KIR65595.1  14 GAGSGIGLATARRFAAEGARVVCVDVDAAA---GERAAQEVGGEFVACDVADEAAVRELFDGVAQRHGRVDVAFNNAGISPPDDDSILETGLDAWER 107
                   889**************************9...89999********************************************9************** PP

                   HHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTT.HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGS.TTHHHHHH CS
  adh_short_C2  98 aldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnyn.aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgi.kgfdelle 190
                   +l vn++s++l++k+a+p+m+++  gsi+n++s+ a ++ +  + ay+a+K+++ a+tr l v+++++giRvNa +pgpi+T++  ++ +  +e  +
    KIR65595.1 108 VLRVNTTSVYLCCKYAIPHMRRQgkGSIINTASFVALMGAATSQiAYTASKGGVLAMTRELGVQFAREGIRVNALCPGPIATPLLMELfAADPERAA 204
                   ******************9998889**************999999***************************************6555166788888 PP

                   HHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 191 elearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   +   + p+gr+g+pee+a+a++fLasd++s++t +++vvDgG+t
    KIR65595.1 205 RRLVHVPMGRFGQPEEIAAAVAFLASDDSSFMTAAQFVVDGGIT 248
                   9999**************************************97 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.0   0.1   1.1e-56   1.7e-53       2     192 ..       9     197 ..       8     200 .. 0.95

  Alignments for each domain:
  == domain 1  score: 181.0 bits;  conditional E-value: 1.1e-56
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S..S--SSGGGCSH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi..tgsgpfselse 98 
                 v++vtGa+sGIG+a+a+++a+eGa+vv+vd  +++ e++a+e++       ++++Dv+d+++v++l++ +++++g++dv  nNAGi    + ++ e+  
  KIR65595.1   9 VAVVTGAGSGIGLATARRFAAEGARVVCVDVDAAAGERAAQEVGG-----EFVACDVADEAAVRELFDGVAQRHGRVDVAFNNAGIspPDDDSILETGL 102
                 89******************************************8.....5***********************************8777888999999 PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-T.TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCT CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpva.gvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelre 192
                 ++werv+ vN t+v+l+++ ++p+m +q +G+I+n++S +++++ a +++aY+AsK++v ++tr+l  ++a++girvna++PG+++T++ +el +
  KIR65595.1 103 DAWERVLRVNTTSVYLCCKYAIPHMRRQGKGSIINTASFVALMGAAtSQIAYTASKGGVLAMTRELGVQFAREGIRVNALCPGPIATPLLMELFA 197
                 *****************************************998762689***************************************998865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   1.0   2.3e-10   3.4e-07       4     151 ..      11     156 ..       9     168 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2.3e-10
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE-----..----TTT- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvl..rdklleem 100
                 ++tG+  g+Gl++ar  a++gar + +     a          e +a+++  e+va+Dv+d++av++l++ + ++++++   ++ Ag++  +d+ + e+
  KIR65595.1  11 VVTGAGSGIGLATARRFAAEGARVVCVDVDA-A--------AGERAAQEVGGEFVACDVADEAAVRELFDGVAQRHGRVDVAFNNAGISppDDDSILET 100
                 89********************977664444.2........2333556788899**********************************844699***** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--T.T-HHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsa.gqanYaa 151
                   +++e+vl+   + +    ++  +    +    ++ ++S  +l+g+a  q +Y+a
  KIR65595.1 101 GLDAWERVLRVNTTSVYLCCKYAIPhmrrQGKGSIINTASFVALMGAAtSQIAYTA 156
                 *********98877766554443332443444566666666666665424666665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.3   2.9e-09   4.3e-06       2      63 ..      11      73 ..      10     101 .. 0.82
   2 ?   -2.0   0.0       1.3     2e+03     135     152 ..     110     127 ..      91     132 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.9e-09
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.EEEE--TT-HHHHHHHHHHH CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.elveldltdrsalerlfkee 63
                +VtGa   iG a++++++++g +v+++d +  a+++a++e   e+v +d+ d++a+++lf+ +
  KIR65595.1 11 VVTGAGSGIGLATARRFAAEGARVVCVDVDAAAGERAAQEVGgEFVACDVADEAAVRELFDGV 73
                8*****************************9988888777669****************9853 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
                 ----SSHHHHHHHHHHHH CS
   Epimerase 135 plkpnspYaaaKlagekl 152
                  ++++s Y + K+a+ ++
  KIR65595.1 110 RVNTTSVYLCCKYAIPHM 127
                 568999999999998776 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   1.2    0.0025       3.8       9      76 ..      22      82 ..       4      98 .. 0.68
   2 !   14.3   0.2   2.7e-05     0.041       1      61 [.     159     225 ..     159     242 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0025
  Glyco_trans_4_4  9 elaraLaarGheVtvltpapapgapeleedgvrvhrlpvprrpspladlaalralrrllrqrrerpdv 76
                     ++ar++aa+G++V+++  ++a+g+++++e g + + ++v  +       aa+r l + ++qr+ r+dv
       KIR65595.1 22 ATARRFAAEGARVVCVDVDAAAGERAAQEVGGEFVACDVADE-------AAVRELFDGVAQRHGRVDV 82
                     578888888888888866666666667776666666666544.......3333333333566666666 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.7e-05
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapg.......apeleedgvrvhrlpvprrpspladlaalr 61 
                      gG+   ++el  ++a++G +V  l+p+p +        a + e++  r++++p++r ++ +   aa+ 
       KIR65595.1 159 GGVLAMTRELGVQFAREGIRVNALCPGPIATpllmelfAADPERAARRLVHVPMGRFGQ-PEEIAAAV 225
                      788899*******************98855557787774447788999999****9986.33333333 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2     1e-05     0.015       4      70 ..      15      75 ..      11     112 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1e-05
                     ET-TTSH.HHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEE CS
  Methyltransf_25  4 lGcGtGr.ltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvs 70
                     +G G G  +++++a++ g a+v++vD+++++ e+a++++       efv +d+ d     + fD v  
       KIR65595.1 15 AGSGIGLaTARRFAAE-G-ARVVCVDVDAAAGERAAQEV-----GGEFVACDVADEAAVRELFDGVAQ 75
                     3445554244566666.4.*****************999.....466777777554444444444433 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   1.2e-05     0.018       5      34 ..      12      42 ..       7      51 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.2e-05
                    EE--ST.THHHHHHHHHHCTSEEEEE-S-HH CS
  UDPG_MGDP_dh_N  5 viGlGY.vGlvtaavlaeighevigvDidee 34
                    v G+G  +Gl ta  +a+ g  v++vD+d++
      KIR65595.1 12 VTGAGSgIGLATARRFAAEGARVVCVDVDAA 42
                    4477744*********************986 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.0   2.4e-05     0.036       4      45 ..      12      54 ..       8      85 .. 0.81
   2 ?   -2.3   0.0       2.3   3.4e+03      10      27 ..     164     181 ..     160     186 .. 0.84
   3 ?   -3.1   0.0       4.2   6.2e+03      98     118 ..     216     236 ..     214     239 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.4e-05
                EE--SC.CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHH CS
     3HCDH_N  4 viGaGt.mGagiaavfasagleVvlvdiseealekalekieks 45
                v GaG  +G   a  fa++g +Vv vd++++a e+a++++  +
  KIR65595.1 12 VTGAGSgIGLATARRFAAEGARVVCVDVDAAAGERAAQEVGGE 54
                55999769****************************9998764 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.3
                 CHHHHHHHHHHTT-EEEE CS
     3HCDH_N  10 mGagiaavfasagleVvl 27 
                 m +++  +fa++g++V+ 
  KIR65595.1 164 MTRELGVQFAREGIRVNA 181
                 788889999****99986 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 4.2
                 HHHHCCS-TTSEEEE--SSS- CS
     3HCDH_N  98 aelekiakpdailasnTSsls 118
                  + e+ia + a+las+ Ss++
  KIR65595.1 216 GQPEEIAAAVAFLASDDSSFM 236
                 566788999999999998875 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.1   7.9e-05      0.12       1      67 [.      18      88 ..      18      98 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.9e-05
                HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTESEE.EETTTCHHHHHHHHHT.....TTSSEEEEEESSC CS
  ADH_zinc_N  1 gvGlaavqlAkalGaeviavdsseeklelakk.lGadev.inykeadlverikelt.....ggegvdvvfecvG 67
                g+Gla+    +a Ga+v++vd+++   e a++  G ++v  +      +++++el+     +++ vdv+f+ +G
  KIR65595.1 18 GIGLATARRFAAEGARVVCVDVDAAAGERAAQeVGGEFVaCDV---ADEAAVRELFdgvaqRHGRVDVAFNNAG 88
                899**********************997776669955540454...3466777777666764559*****9999 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4     7e-05       0.1       2      57 ..      11      68 ..      10      74 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7e-05
                EEES-SH.HHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTT.SEEEES-TTSHHHHHH CS
      TrkA_N  2 iiiGlGr.vGrslaeeLseggkdvvvidkdeerveelreeg.levvvgdatdeevLee 57
                ++ G+G  +G + a+++ ++g +vv +d d ++ e++++e   e+v  d++de++++e
  KIR65595.1 11 VVTGAGSgIGLATARRFAAEGARVVCVDVDAAAGERAAQEVgGEFVACDVADEAAVRE 68
                677766449**********6657**********99998777799*********99987 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.6   0.00013       0.2       5      64 ..      15      72 ..      12     112 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
                     -TTSHHHHHHH...HTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEE CS
  Methyltransf_11  5 cGtGrlaeala...krgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDl 64
                     +G+G+ ++        garvv+vD+++++ ++a +++ +e      v +d+ +     + fD 
       KIR65595.1 15 AGSGIGLATARrfaAEGARVVCVDVDAAAGERAAQEVGGEF-----VACDVADEAAVRELFDG 72
                     45554444444222777****************99999986.....55555543333335554 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00012      0.18      33      82 ..       4      55 ..       1      64 [. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                  -GTTSEEEEES-SH.HHHHHHHHHHHTT-EEEEESSSHHHHH.CHHHHTCEE CS
  2-Hacid_dh_C 33 elsgktvGiiGlGr.IGqavakrlkafgmkviaydrskkkee.eeeelgvel 82
                  +l+++   + G+G+ IG a+a+r++a g++v+++d+   + e +++e+g e+
    KIR65595.1  4 RLQDRVAVVTGAGSgIGLATARRFAAEGARVVCVDVDAAAGErAAQEVGGEF 55
                  5788889999**966********************99887774455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1936.28
//
Query:       KIR65596.1  [L=182]
Description: pyridoxamine 5'-phosphate oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-12   45.6   0.0    1.3e-11   44.5   0.0    1.5  2  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   7.3e-16   1.3e-11       2      85 ..       8      99 ..       7     102 .. 0.88
   2 ?   -3.1   0.0      0.54   9.6e+03      29      46 ..     140     156 ..     138     165 .. 0.50

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 7.3e-16
                    HHHHHHHHHHSSEEEEEEEE..TTSEEEEEEEEEEEETTT......TEEEEEEETTSHHHHHHHHH-EEEEEEEETT.GSEEEEEEEEEEEES CS
  Putative_PNPOx  2 deelreflaeskavvlATvd..edGrPnvspvllkagdgr......dgivfatnadsrklrnleenprvallfldde.lgrgvrieGtaelvs 85
                    d  lref++e+ ++++AT+   +dG++nvsp++    +          i+f+++  +++ ++l++n r++l+f+ ++   + vr++G+ + v+
      KIR65596.1  8 DGRLREFIEEQAVFFVATAPsgADGHVNVSPKGMRGTFVVlgphrvAWIDFHGS-GAETIAHLRQNGRITLMFCAFAgPPNIVRLHGRGTAVT 99
                    6689**************5555***********999999999998888888865.5568888*************************999887 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.54
                     EEEEEEEETTTTEEEEEE CS
  Putative_PNPOx  29 spvllkagdgrdgivfat 46 
                     +p++  +gd++ +++ a 
      KIR65596.1 140 VPLMRYEGDRD-LLIRAH 156
                     56666666666.333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1338.92
//
Query:       KIR65597.1  [L=1265]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-47  160.4   0.8    9.3e-47  159.4   0.8    1.5  1  SpoIIE        Stage II sporulation protein E (SpoIIE)
    8.8e-29  100.3   0.1    2.5e-25   89.2   0.0    2.8  2  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    1.7e-23   82.9   0.0    3.6e-23   81.9   0.0    1.6  1  Response_reg  Response regulator receiver domain
    8.8e-20   70.9   0.8    2.2e-14   53.5   0.1    3.0  2  HATPase_c_2   Histidine kinase-like ATPase domain
    3.3e-15   55.9   0.1    9.5e-15   54.4   0.1    1.9  1  HisKA         His Kinase A (phospho-acceptor) domain
    1.1e-05   25.8   2.2      0.058   13.8   0.2    3.7  3  GAF_3         GAF domain
    1.8e-05   25.0  16.1    0.00021   21.6   1.5    5.4  5  GAF_2         GAF domain
  ------ inclusion threshold ------
      0.014   16.0   0.1       0.09   13.4   0.0    2.4  2  GAF           GAF domain
       0.11   12.4   0.0       0.68    9.8   0.0    2.0  2  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik
       0.16   12.2   0.0       0.16   12.2   0.0    3.5  4  PAS_4         PAS fold


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   0.8   5.2e-50   9.3e-47       2     191 ..     957    1138 ..     956    1140 .. 0.90

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 5.2e-50
                  TTEEEEEEEECSSSSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEESSSSEEEEETTSTEEEE CS
      SpoIIE    2 dgrlalvvgDvvGhGleAalimgllrsalrelataglepaevlkrlnralardleeeerfaTavlavydpstgkleyanaGhpppllvrpdggtkll 98  
                  d+ l+lv+gDvvG+G++Aa+ mg+lr+alr+++ +g++p e l+rlnr++  + e+   faT+v++ + p tg+l+ya+aGhp pll+r+d+ + l 
  KIR65597.1  957 DDELVLVIGDVVGKGVRAAASMGQLRNALRAYVLEGYDPGESLTRLNRLV-GSAEQP-SFATVVCLWFSPRTGRLRYASAGHPSPLLIRGDDVAFLH 1051
                  8899**********************************************.888888.9*******************************99***** PP

                  E--SS--TTTSSST-EEEEEEE--TTEEEEEESCCCCSSSHHHHHHCCCHHCHHHHCT......HCCHHHHHHHHHHHHTTSSSSS-EEEEEEE CS
      SpoIIE   99 lastglplGilpeadyetaelelepgdtlllyTDGvtEardsdgelfgkerllallasa.egesleelldalveellelgsgeleDDitllvlr 191 
                  + + g+p+G++p+a y+t+   l+pg +lllyTDG++E r+ +       +l++l a+a  ge++++l+da+ve++ +   ++l+DD+++l+l+
  KIR65597.1 1052 DRALGPPVGAIPGASYRTVDDALAPGARLLLYTDGLIEDRQLGLDA----ALAQLRADAaGGEHVADLVDAVVERVAA---RPLRDDVAVLALE 1138
                  ****************************************443333....33333333324556*************9...58*********97 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   1.4e-28   2.5e-25       7     110 ..     507     610 ..     502     612 .. 0.95
   2 !    8.1   0.0    0.0021       3.8       5      47 ..    1179    1223 ..    1175    1264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 1.4e-28
                 HHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEE CS
   HATPase_c   7 rqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttf 104
                 ++i+ nlv Navkf t +ge++v+++a ++  +++v D+G Gi +e+l+++fe+f +  + ++r+++gtG+Gl++v++lve++gG+ + +s  +rG+tf
  KIR65597.1 507 EKIVLNLVANAVKF-TFDGEVRVRVRAVDGAARLEVADTGVGIAPEELPHVFERFHRvPGVRSRTHEGTGIGLALVRELVEMHGGRAEATSVADRGSTF 604
                 689***********.***********9778****************************999************************************** PP

                 EEEEES CS
   HATPase_c 105 tftlpl 110
                 t+t+p+
  KIR65597.1 605 TVTVPF 610
                 ***997 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0021
                  HHHHHHHHHHHHHHHH..HSTTTEEEEEEEEEETEEEEEEEESSS CS
   HATPase_c    5 rLrqiisnlvdNavkf..atkageieveikaseddlvisveDnGi 47  
                   L+ ++s++  Na+++   + +++i ve++  ++++v +v+D+G+
  KIR65597.1 1179 DLTVAVSEAAANAIEHpvCPAEPTIGVEVTIADGTVVATVRDSGQ 1223
                  577789**********6544677776666654779999*****95 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0     2e-26   3.6e-23       1     112 []     670     781 ..     670     781 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 2e-26
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTES CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealkagad 95 
                   +l++dD+ ++re +++ll+ ++  ev ++ dg eal+ + e  +dl+l+D++mp++dG+ l++ +r+++  +++p+++l+a++ +++av++l +gad
    KIR65597.1 670 ILLADDNADLREHVTRLLRPSW--EVVAVPDGVEALRRAVEAPFDLVLTDVMMPRLDGFGLVTALRADPrtRHVPIVLLSARAGSAEAVAGLAVGAD 764
                   89*****************554..5889***************************************998899************************ PP

                   EEEESSG-HHHHHHHHH CS
  Response_reg  96 dflsKpfdpeeLlkale 112
                   d+l+Kpf+ eeL+++++
    KIR65597.1 765 DYLTKPFSGEELIARVR 781
                   *************9985 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.1e-05      0.02      42     110 ..     512     586 ..     509     608 .. 0.82
   2 !   53.5   0.1   1.2e-17   2.2e-14       1     124 [.    1149    1260 ..    1149    1261 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
  HATPase_c_2  42 NavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep......keslkegGrGlalikglvD 110
                  N v  a +   +g+v+vr++  ++a ++evaD G g  pe+lp+  e         +   +  G+Glal+++lv+
   KIR65597.1 512 NLVANAVKFTFDGEVRVRVRAVDGAARLEVADTGVGIAPEELPHVFERFHrvpgvrSRTHEGTGIGLALVRELVE 586
                  55555555555799**************************9998766444999999999999***********97 PP

  == domain 2  score: 53.5 bits;  conditional E-value: 1.2e-17
  HATPase_c_2    1 isadpehvrtvrevaeavlrraglseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeepkeslk 96  
                   ++adp++++ +r+ +e++l ++++ e++l ++ +av+Ea +Na+eh    a+  ++ v++++++++++++v+DsG++ + +             + 
   KIR65597.1 1149 LPADPTRLSVLRRRLEDFLTAHRVGENDLFDLTVAVSEAAANAIEHPVCPAE-PTIGVEVTIADGTVVATVRDSGQWREST------------GAG 1231
                   58********************************************886555.89999999****************7763............456 PP

  HATPase_c_2   97 egGrGlalikglvDevey.dgegnvvtms 124 
                    +GrGlali++l D     ++eg++vt++
   KIR65597.1 1232 FRGRGLALIRALGDLTVSrTAEGTQVTLR 1260
                   78************87556********97 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.1   5.3e-18   9.5e-15       1      67 []     389     455 ..     389     455 .. 0.94

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 5.3e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 +++ f+a+v+HE+rtPL+ +lg +e L  ++ l++   + l  ++++a rl++lv+++Ld+sr+e+g
  KIR65597.1 389 AKTNFFANVSHEFRTPLTLVLGPLEELLADPTLPDPHLDRLTMMHRNALRLLKLVNTVLDFSRLESG 455
                 5899**********************97777888899999*************************97 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0043       7.8      36     126 ..     100     198 ..      91     198 .. 0.78
   2 !   13.8   0.2   3.2e-05     0.058      81     127 ..     321     367 ..     277     369 .. 0.78
   3 ?    2.0   0.6      0.14   2.5e+02      23     129 .]     806     901 ..     785     901 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0043
       GAF_3  36 vaagwdgkpalsesldedsalarralssgevvse...psf.aeedglpdraa..lavPLvagr.qviGvlal.astkprafdaedlelleslArqiata 126
                 +a+g  +++ + e+ d   +l + ++++ge++ +   p + ++   l+d +    + P++a + +  Gvl+l + t +r +++++l+ l +l++ +a a
  KIR65597.1 100 HAIGQPANEHWRETWDVLGPLLDSVHKTGEPYRGenhPFVlHRHGFLEDVYFdiSYDPIRAADgGIDGVLCLvNETTGRVLGERRLRALAELGSDLAEA 198
                 556667788888888888899999999999988855433323345578877776779****99********967777788**************99976 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.2e-05
       GAF_3  81 raalavPLvagrqviGvlalastkprafdaedlelleslArqiatai 127
                 + al++P++a+++++G l+++ +   +f++e + +++ +A+q++ a+
  KIR65597.1 321 AQALVLPVTATHEPVGALVVGVSARLPFTDEYRTFFDLIAAQLSRAV 367
                 4569***************************************9886 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.14
       GAF_3  23 alllldedgnklqvaagwdgkpalsesldedsalarralssgevvsepsfaeedglpdraalavPLvagr.qviGvlalastkprafdaedlelleslA 120
                 a++  ++  + lqvaa +  +  l         +ar +++s ++ +e+++ +  +   ++ +++PL+    +++G l ++ + + a d+ +++l   lA
  KIR65597.1 806 AVNTARTTAEVLQVAARH--ALGL-------AEAARVVVTSSGARYEADGGG--TAAVEPSVVLPLTGSAgETLGELRVWGHAEDAADPGHAAL-TQLA 892
                 555555555555555544..2222.......345778888888888888777..56799*********99*******99999998888888765.5678 PP

       GAF_3 121 rqiataier 129
                 r+++  +e+
  KIR65597.1 893 RLVGVRLEN 901
                 888877776 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.11   1.9e+02      97     136 ..     157     198 ..     149     198 .. 0.86
   2 !   21.6   1.5   1.1e-07   0.00021      19     137 ..     218     367 ..     199     367 .. 0.67
   3 ?   -3.2   0.0       5.1   9.2e+03      20      40 ..     665     685 ..     655     705 .. 0.69
   4 ?    5.4   0.4     0.012        21      79     135 ..     841     897 ..     743     900 .. 0.69
   5 ?    1.7   0.1      0.16   2.9e+02      87     119 ..    1106    1146 ..    1001    1149 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
                 EE-T.TS---EEEEES.......--HHHHHHHHHHHHHHHHH CS
       GAF_2  97 Plis.egrvvGvlnlyankppa.fdeedlelLeelaeqiaia 136
                 P+++ +g + Gvl+l+ +  ++ + e+ l+ L el++++a a
  KIR65597.1 157 PIRAaDGGIDGVLCLVNETTGRvLGERRLRALAELGSDLAEA 198
                 7777777788*****777777768**************9976 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 1.1e-07
                 S..EEEEEEE-TTS-EEEE.................................EEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-.GGG.-S-HHH CS
       GAF_2  19 gaalgyillvdddgglrla.................................awgeaeeefgaaldrplgeglvgealrtgrpvilnd.lee.dpdkkg 82 
                 ++ ++ ++l dd+g+l+la                                  +g+a++ +ga ++      ++gea+    + + +  +++  +  + 
  KIR65597.1 218 DVPFALLYLRDDAGKLTLAgrsgtglpapagrsgtglpapagrsgtglpapaGRGGADDADGAVAPL-----PLGEAATATVSRVADGgSATtIDVADL 311
                 5679999999999999988888888888888888888888777766666554444555555555533.....455555554333322233332333445 PP

                 HH.HHHHTT--EEEEEE-TTS---EEEEES......--HHHHHHHHHHHHHHHHHH CS
       GAF_2  83 lp.aghaglrsflavPlisegrvvGvlnlyankppafdeedlelLeelaeqiaiai 137
                 lp +++ + +  l++P+++  ++vG+l+++ + + +f++e +++++++a+q+++a+
  KIR65597.1 312 LPhLDAGAAAQALVLPVTATHEPVGALVVGVSARLPFTDEYRTFFDLIAAQLSRAV 367
                 552444444455*******889*******9899999*****************996 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5.1
                 ..EEEEEEE-TTS-EEEEEEE CS
       GAF_2  20 aalgyillvdddgglrlaawg 40 
                 aa+g ill dd+ +lr ++ +
  KIR65597.1 665 AAAGRILLADDNADLREHVTR 685
                 789999999998887766433 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.012
                 -HHHHHHHHHTT--EEEEEE-T.TS---EEEEES......--HHHHHHHHHHHHHHHH CS
       GAF_2  79 dkkglpaghaglrsflavPlis.egrvvGvlnlyankppafdeedlelLeelaeqiai 135
                 +  +   g a++ +++++Pl++  g+++G l ++++ ++a d+ + + L++la+++++
  KIR65597.1 841 RYEADGGGTAAVEPSVVLPLTGsAGETLGELRVWGHAEDAADPGHAA-LTQLARLVGV 897
                 333444566666667*******99*********88888888888877.7777777765 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.16
                  HHTT--E...........EEEEE-TTS---EEEEES......-- CS
       GAF_2   87 haglrsf...........lavPlisegrvvGvlnlyankppafd 119 
                  +ag  +            +a Pl++    v+vl+l a++p++f 
  KIR65597.1 1106 AAGGEHVadlvdavvervAARPLRD---DVAVLALEATEPNRFA 1146
                  3333333566666666669999966...5999999999999995 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.8   8.7e+03      94     128 ..     157     194 ..     156     199 .. 0.67
   2 ?   13.4   0.0     5e-05      0.09      80     133 .]     313     367 ..     208     367 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.8
                 EEEE.TTEEEEEEEEEESSS..CSHHHHHHHHHHHHHH CS
         GAF  94 Plvn.dgelwGllvlhnpsp..pftreelellqvladq 128
                 P+++ dg + G+l+l+n+++     +  l+ l +l++ 
  KIR65597.1 157 PIRAaDGGIDGVLCLVNETTgrVLGERRLRALAELGSD 194
                 6775588888*******555545566666666655554 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 5e-05
                 HHHHHTTESEEEEEEEEETTEEEEEEEEEESSS.CSHHHHHHHHHHHHHHHHHHH CS
         GAF  80 dllenmgirsslvvPlvndgelwGllvlhnpsp.pftreelellqvladqvaval 133
                  +l++     +lv+P++++ e +G+lv+    + pft+e + ++  +a+q++ a+
  KIR65597.1 313 PHLDAGAAAQALVLPVTATHEPVGALVVGVSARlPFTDEYRTFFDLIAAQLSRAV 367
                 33444445589*******************66689****************9886 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00038      0.68       4      74 ..     507     575 ..     504     589 .. 0.77
   2 ?   -0.4   0.1      0.51   9.2e+02      59     102 ..    1218    1260 ..    1206    1264 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00038
  HATPase_c_3   4 ekAlaelvdNsld.AdaenvkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakrkstslGkkG 74 
                  ek ++ lv N++      +v + v   +  ++++ + D G G+ +eel  ++ r+++    ++r+++ +   G
   KIR65597.1 507 EKIVLNLVANAVKfTFDGEVRVRVRAVD-GAARLEVADTGVGIAPEELPHVFeRFHRVPGVRSRTHEGT---G 575
                  5678999999999544567888888876.489******************9956888877754444333...4 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.51
  HATPase_c_3   59 sskeak.rkstslGkkGiGlklAslslgkkltvitkkegesstlt 102 
                    + + + r+st  G +G G  lA ++ + +ltv  ++eg++ tl+
   KIR65597.1 1218 VRDSGQwRESTGAGFRGRG--LALIRALGDLTVSRTAEGTQVTLR 1260
                   444444368999999****..*************99999998765 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.2e-05      0.16      68     109 ..     139     179 ..      82     180 .. 0.77
   2 ?   -0.9   0.0       1.1   1.9e+03      43     100 ..     281     339 ..     267     343 .. 0.64
   3 ?   -3.0   0.1       4.9   8.7e+03      48      92 ..     695     737 ..     666     750 .. 0.62
   4 ?   -3.5   0.1         7   1.2e+04      33      61 ..    1105    1136 ..    1097    1142 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.2e-05
       PAS_4  68 fleelllpgeerhyelrllPlrdesGevigvlvisrDiTerr 109
                  l+ +    e++++++++ P+r+++G+++gvl+++ ++T r+
  KIR65597.1 139 VLHRHG-FLEDVYFDISYDPIRAADGGIDGVLCLVNETTGRV 179
                 334444.599****************************9885 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.1
       PAS_4  43 llpeedaarleralrrvlegeep..iefleelllpgeerhyelrllPlrdesGevigvlv 100
                 ++p +++++  + + rv++g+ +  i+ ++ l + +++   +  +lP+  +  e++g+lv
  KIR65597.1 281 VAPLPLGEAATATVSRVADGGSAttIDVADLLPHLDAGAAAQALVLPVT-ATHEPVGALV 339
                 7888899999999999999985400333333333666666666666663.4555555555 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.9
       PAS_4  48 daarleralrrvlegeepiefleelllpgeerhyelrllPlrdes 92 
                 + ++  +alrr++e    +  ++++ + + + + ++++l+  d++
  KIR65597.1 695 AVPDGVEALRRAVEAPFDLVLTDVMMP-RLDGFGLVTALRA-DPR 737
                 455556777888877777777777776.5556655555555.455 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 7
       PAS_4   33 eellGktlaellpee...daarleralrrvle 61  
                  +++ G+++a+l+ +    +aar  r++ +vl+
  KIR65597.1 1105 DAAGGEHVADLVDAVverVAARPLRDDVAVLA 1136
                  55555555544443333345554444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 8134.45
//
Query:       KIR65598.1  [L=285]
Description: methionine aminopeptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-53  180.5   0.7    3.7e-53  180.3   0.7    1.0  1  Peptidase_M24  Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.3   0.7   2.1e-57   3.7e-53       1     209 []      48     276 ..      48     276 .. 0.89

  Alignments for each domain:
  == domain 1  score: 180.3 bits;  conditional E-value: 2.1e-57
                    HHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT.....TCEESSSSEEEEGGGGGSTTTBCSSSB--TTEEEEEEEEEEETTEEEE CS
  Peptidase_M24   1 elirkaariasaaleavleaikpgvterelaaeieattlkrhg.....arglafppivasgenaavlhytpndrvlkegdlvlidagaeydgyasD 91 
                    e +r a+r+a++a + + e++kpgvt++e++++++++ l +hg      ++ +fp++++++ n+ ++h++p+++vl +gd+v++d++a + g ++D
     KIR65598.1  48 ERMRVAGRLAAQATQLAGEHCKPGVTTDEIDRVVHEF-LCDHGaypstLGYKGFPKSCCTSLNEVICHGIPDSTVLCDGDIVNVDVTAYIGGVHGD 142
                    68*********************************99.7788889999999********************************************* PP

                    EEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTBCCGBSSCSEEEESSSSSEEEEEESS..STTCSSB--TTBEEE CS
  Peptidase_M24  92 itrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesaglakffphglGHgvGlevhdegpsvsr..esndgrkleeGmvft 185
                    +  T++vG+ ++e+r l+e + ea+ ++ikav pG+ ++ i+++++ ++++ g+  +++ ++GHg+G  +h +  +v++   ++ ++++e+Gm+ft
     KIR65598.1 143 TDATFCVGEVDEEARLLVERTHEAMMRGIKAVAPGRQINVIGRVIESYAKRFGY-GVVRDFTGHGIGEAFHSG-LYVPHydSPRPTDVMEPGMTFT 236
                    ******************************************************.999*************87.666554446689********** PP

                    EEEEEE....EET.....TT.......E.EEEEBEEEEEES CS
  Peptidase_M24 186 iEpgiy....fap.....ge.......g.gvriedtvlvte 209
                    iEp+i     +       g+       + ++++e+t+lvte
     KIR65598.1 237 IEPMITlgthQ-YdmwddGWtvvtkdrKwTAQFEHTILVTE 276
                    ***66643331.03333444556666655***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2128.32
//
Query:       KIR65599.1  [L=237]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-64  216.4   7.0    4.7e-64  216.2   7.0    1.0  1  VIT1       VIT family
  ------ inclusion threshold ------
      0.064   13.1   0.9       0.12   12.2   0.9    1.4  1  FAM165     FAM165 family
       0.48   10.1   2.4       0.81    9.4   1.9    1.7  1  Lysis_col  Lysis protein
        0.7    8.6   6.2       0.21   10.4   0.2    2.0  2  DUF4781    Domain of unknown function (DUF4781)


Domain annotation for each model (and alignments):
>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.2   7.0     1e-67   4.7e-64       1     214 [.      21     228 ..      21     229 .. 0.97

  Alignments for each domain:
  == domain 1  score: 216.2 bits;  conditional E-value: 1e-67
        VIT1   1 lrdavlGanDGLvspfalvaGlsaaslgssktvllaGlaellAGaiSMgiGeYlsvkserdlekaerkreeeeleedpeegeaeelaeilearglseel 99 
                 lr av+Ga+DGLv+++al+aG++++++ s+++++l+G+a+l+AGaiSMg+GeY sv+s +++ +ae+++e++ele++p e+ea+ela+   argls++l
  KIR65599.1  21 LRPAVFGAMDGLVTNIALIAGVGGGGV-SPHSIVLTGVAGLVAGAISMGLGEYTSVRSANEQVAAEVAKERRELERHP-EAEARELADAWVARGLSRDL 117
                 699***********************8.**************************************************.8999**************** PP

        VIT1 100 aqevaaellknpdallelmlreelgpsaseelasplkaAlssalsfliGgliPllpylfvesvglalvvsiavtllalllfGavkalltgssklvsalr 198
                 a++va+ + +np++ l++++reelg+++ ++++sp+ aA+ss+l+f +G+liPll yl+   + + l++++av ++ l++ Ga+ a++t++ ++ s+lr
  KIR65599.1 118 ATQVAEAVRANPEEALRVHVREELGVDP-DDQPSPWAAAISSFLFFSVGALIPLLTYLL---GATSLWLALAVGGVGLFAAGAIVARFTNRAWWSSGLR 212
                 *************************997.56689************************9...5589999999*************************** PP

        VIT1 199 mlliGalAaaaaylig 214
                 +ll+Ga+Aaaa+yl+g
  KIR65599.1 213 QLLLGAAAAAATYLVG 228
                 **************98 PP

>> FAM165  FAM165 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.9   2.7e-05      0.12       6      30 ..     168     192 ..     166     202 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.7e-05
      FAM165   6 vPLLlYILaaKtliLCLaFAGvKiy 30 
                 +PLL Y+L a +l L La  Gv ++
  KIR65599.1 168 IPLLTYLLGATSLWLALAVGGVGLF 192
                 7********************9877 PP

>> Lysis_col  Lysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.9   0.00018      0.81      27      47 ..      39      58 ..      25      59 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00018
   Lysis_col 27 vRDvqGGtVaPSSsselTGva 47
                +  v+GG V+P S   lTGva
  KIR65599.1 39 IAGVGGGGVSPHSI-VLTGVA 58
                6679*********9.9***98 PP

>> DUF4781  Domain of unknown function (DUF4781)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   4.7e-05      0.21      80     140 ..      19      80 ..      10     102 .. 0.80
   2 ?    0.6   1.8     0.045     2e+02     158     177 ..     177     196 ..     175     227 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4.7e-05
     DUF4781  80 crlkskilnvlDvvstvvglva.avpvgaaalatPvaapvllaalvvgvgsavYstgRsiqr 140
                  +l+  ++ ++D ++t   l+a + + g++   + + +++ l a+++++g + Y+ +Rs+++
  KIR65599.1  19 GWLRPAVFGAMDGLVTNIALIAgVGGGGVSPHSIVLTGVAGLVAGAISMGLGEYTSVRSANE 80 
                 67788999*******9999999444445555666677888888888*************986 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.045
     DUF4781 158 arnswLgvaagvvglgaaga 177
                 a + wL++a g vgl aaga
  KIR65599.1 177 ATSLWLALAVGGVGLFAAGA 196
                 7789************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1689.27
//
Query:       KIR65600.1  [L=236]
Description: hypothetical protein TK50_09490 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1656.09
//
Query:       KIR65601.1  [L=154]
Description: nitroreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-30  104.9   0.3    3.8e-30  104.7   0.3    1.1  1  F420H2_quin_red  F420H(2)-dependent quinone reductase


Domain annotation for each model (and alignments):
>> F420H2_quin_red  F420H(2)-dependent quinone reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.7   0.3   2.1e-34   3.8e-30      18     126 ..      40     149 ..      22     153 .. 0.90

  Alignments for each domain:
  == domain 1  score: 104.7 bits;  conditional E-value: 2.1e-34
                      TXTTS---EEEEEE-TTT-SEEEEEEEEEEETTEEEEE-SGGGGSSS-HHHHHHHH--EEEEEETTEEEEEEEEE--HHHHHHHHHHHHHH-TH CS
  F420H2_quin_red  18 rrlegvpvllLtttGrktgkprktplgfvrdgdsylvvaskgGapkhpswylNlkanPrvevqvgakkldvtAreveddekarlwklvvensps 111
                        l  vp+l++tttGr++g pr +pl +v dgd+++vv+s+ G++++p w lNl a+P +ev v++++l+v A+ ++++e++rlw+l+++++p+
       KIR65601.1  40 VALGLVPSLVITTTGRRSGLPRSNPLLYVPDGDAFVVVGSNWGQQHQPAWALNLLADPTAEVDVRGRRLAVRAEVATGAERDRLWRLLTTEWPA 133
                      356678**************************************************************************************** PP

                      HHHHHHHH.SSTS-EE CS
  F420H2_quin_red 112 Yadyqskt.dreipvv 126
                      Y+ y  +  +rei v+
       KIR65601.1 134 YETYVERAgGREIRVF 149
                      ****998725778876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1135.32
//
Query:       KIR65602.1  [L=910]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-06   26.3   0.6    7.7e-06   26.3   0.6    4.7  4  FtsX      FtsX-like permease family


Domain annotation for each model (and alignments):
>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.6   4.3e-10   7.7e-06       5      95 ..     318     409 ..     314     410 .. 0.92
   2 ?   -5.1   5.1         1   1.8e+04      19      26 ..     457     464 ..     429     531 .. 0.49
   3 ?    1.3   0.4     0.027   4.8e+02      10      41 ..     773     804 ..     770     807 .. 0.84
   4 !   14.2   3.8   2.5e-06     0.045       4      90 ..     811     902 ..     808     905 .. 0.74

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 4.3e-10
        FtsX   5 gilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfs.selkisidlitvliiivlllllallagllsiskilkke 95 
                 ++  + G   +++++++l  ++++++ ++++Gl+lg++ a +   +++++vf+    ++ + + ++++i+++++l  +la+l++++ +++++
  KIR65602.1 318 ALVAVAGGDAAHLRRIVLADGVVLGCAGAAAGLALGVAGAFAARPLIEEYVFGaRFGAYRVFPAALAAIAAVAVLAGVLAALAPAWTAARQD 409
                 55566788899************************9999999999*******9899********************************9986 PP

  == domain 2  score: -5.1 bits;  conditional E-value: 1
        FtsX  19 llllteil 26 
                 +++l+e+ 
  KIR65602.1 457 GVVLGELG 464
                 22222222 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.027
        FtsX  10 lGmkkkqvlllllteillitlvalviGlglgl 41 
                  G   +++ll+l + + lit+ a+++++gl++
  KIR65602.1 773 WGSDERSLLLVLAIGSGLITVGAAAVATGLAA 804
                 68889999999999999999999999987765 PP

  == domain 4  score: 14.2 bits;  conditional E-value: 2.5e-06
        FtsX   4 igilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfs.....selkisidlitvliiivlllllallagllsisk 90 
                 +++l a+G++ +  + l l ++ +i+++++++G+++gl  a ++   l+             +i ++++t+ +++v+ l+ +  a+l+  s+
  KIR65602.1 811 LSTLGAVGASPRMRRVLSLCQAGVIAVLGSALGIVVGLGTAVIILVALNRRIATawpvqEPYPIVVPWLTLGVLVVVPLVAMAGAALFTRSR 902
                 7899*****************************88866666665555555544334336778888888888888888777777776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (910 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 6663.64
//
Query:       KIR65603.1  [L=197]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-15   56.0   0.1    4.2e-15   55.5   0.1    1.3  1  PadR             Transcriptional regulator PadR-like family
    1.4e-10   41.7   0.2    2.3e-10   41.0   0.2    1.3  1  Vir_act_alpha_C  Virulence activator alpha C-term
  ------ inclusion threshold ------
      0.058   13.1   0.1        0.1   12.3   0.1    1.4  1  AphA_like        Putative AphA-like transcriptional regulator
        0.2   11.6   0.0        0.5   10.3   0.0    1.8  1  TrmB             Sugar-specific transcriptional regulator Trm


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.1   9.4e-19   4.2e-15       1      74 [.       7      77 ..       7      78 .. 0.93

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 9.4e-19
                HHHHHCCS-EEHHHHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHH CS
        PadR  1 iLalleeqpsyGyeiikeleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrela 74
                +Lalle++++yGy+++ ++ee+++  + l+ G++Y++L+rLe++glv    e +      + Y++TdaGr+ la
  KIR65603.1  7 LLALLERGQMYGYQLRAAFEESTGSTWPLNIGQVYTTLSRLERDGLVRPLPESE---AGQRPYEITDAGRADLA 77
                79**********************************************998865...67788********9885 PP

>> Vir_act_alpha_C  Virulence activator alpha C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.2     5e-14   2.3e-10       2      75 ..      91     166 ..      90     167 .. 0.94

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 5e-14
  Vir_act_alpha_C   2 RdelllKlfaaavldpealieeLerrreeheekLaeyeeieerl..eeargqylvLrrgiryeeawieWcdealel 75 
                      Rdel++Kl +a   +  ++++ ++ +r +  + L+e+++++      e++ ++lvL++ + ++ea+i+W+d++ + 
       KIR65603.1  91 RDELAIKLALALTTPGVDVRAVVQTQRTATMRALQEFTRLKYASdrPEDLPWRLVLDAMVFQAEAEIRWLDHCETS 166
                      9*************************************9987777878************************9875 PP

>> AphA_like  Putative AphA-like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.3e-05       0.1      15     171 ..       6     160 ..       2     163 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.3e-05
   AphA_like  15 vvLGlieraplryselagavrhlvsriagPsldLlgsslellreeGLveavdGeGmednalLaiteaGrrelqaLltanlraplsdlsklviaLklrfL 113
                   L l+er+ +   +l +a     +  +  ++  ++++l  l  +GLv ++  e    +    it+aGr++l   ++ ++  +    + l+i+L l+  
  KIR65603.1   6 GLLALLERGQMYGYQLRAAFEESTGSTWPLNIGQVYTTLSRLERDGLVRPL-PESEAGQRPYEITDAGRADLALWFATPISRTDRPRDELAIKLALALT 103
                 5667777888877788888888888888888889999**************.55556667799**************9999886667777777777653 PP

   AphA_like 114 dL.lev.aerraqidlllelvetelarlvdlraavsedGplleeWLdhdieqleerlewl 171
                    ++v a+ ++q  + +++   e+ rl    ++  ed    +  Ld  + q+e+ + wl
  KIR65603.1 104 TPgVDVrAVVQTQRTATMRAL-QEFTRLK-YASDRPEDL-PWRLVLDAMVFQAEAEIRWL 160
                 211121122233333333332.2333332.222222222.23445777777777777776 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00011       0.5      37      59 ..      38      63 ..       6      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
                HCHHHHHHHHHHCTSEEEESST...T CS
        TrmB 37 skvYevLrsLedkGlVerekgr...p 59
                 +vY +L++Le+ GlV+  +++    
  KIR65603.1 38 GQVYTTLSRLERDGLVRPLPESeagQ 63
                68**************9988775553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1308.49
//
Query:       KIR65604.1  [L=149]
Description: hypothetical protein TK50_09515 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-42  145.6  12.0    1.5e-42  145.4  12.0    1.0  1  DUF4439   Domain of unknown function (DUF4439)


Domain annotation for each model (and alignments):
>> DUF4439  Domain of unknown function (DUF4439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4  12.0   8.2e-47   1.5e-42       1     130 [.      13     148 ..      13     149 .] 0.98

  Alignments for each domain:
  == domain 1  score: 145.4 bits;  conditional E-value: 8.2e-47
     DUF4439   1 alqaalaaEhaavYgYgvvsarldgarraaarealaaHrarrdalaallsargatppaaeaaYelpfevtdaasaarlaaelEedlaaayaalvaadda 99 
                 al  al+aE+aav++Ygv+++rl++a+r+aar+a aaHr+rrdal+  lsa+g+t pa++a+Y+lpf+vtd asa+rla+e+Ee++aa ++a + ++++
  KIR65604.1  13 ALGGALTAEYAAVWAYGVIGVRLADAARTAARRAEAAHRSRRDALVLQLSAAGGTVPADKAGYTLPFPVTDTASALRLAVEVEERTAAFWRAALPHTTG 111
                 6788*********************************************************************************************** PP

     DUF4439 100 dlRstaadaLteaavraarWraelg......afPGlp 130
                 ++R+ a++aLt++avra+rWr+++g      afPG+p
  KIR65604.1 112 EDRNRALAALTDCAVRATRWRRTAGvtpvtvAFPGRP 148
                 ***********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1178.91
//
Query:       KIR65605.1  [L=238]
Description: ribosome maturation factor RimP [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-23   81.0   0.2    1.2e-22   80.1   0.2    1.5  1  DUF150    RimP N-terminal domain
    1.4e-08   34.7   0.1    1.6e-07   31.3   0.1    2.4  1  DUF150_C  RimP C-terminal SH3 domain


Domain annotation for each model (and alignments):
>> DUF150  RimP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.2   1.3e-26   1.2e-22       2      73 .]      47     123 ..      46     123 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 1.3e-26
      DUF150   2 iepvveslglelvdvelskegrgrvlriyidkdggvtlddcekvSraisalLdv.....edpieeeYtLEVsSPGld 73 
                 iepvv+  g++l dv++s++gr++v+r+++d dgg++ld +++vSra+sa Ld+      d + +eY LEVsSPG+d
  KIR65605.1  47 IEPVVNGAGYDLEDVSVSRAGRRHVVRVIVDADGGISLDAVADVSRAVSAALDAaeesgGDILAGEYQLEVSSPGVD 123
                 9*****************************************************988888899************97 PP

>> DUF150_C  RimP C-terminal SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.1   1.8e-11   1.6e-07       1      70 []     126     199 ..     126     199 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.8e-11
    DUF150_C   1 LktaedFarflGelVkvklklpvegr........kkftGkivevdeetitlevdgkkrkkettipladidkArlvpef 70 
                 L+ +++++r++G+lVkv+ + p+ g+        +++tG++ve+d+e+++le d      + ++  a++   r+++ef
  KIR65605.1 126 LTLPRHWRRNVGRLVKVTVRAPLPGQraeqpagdRQVTGRVVEADDERVVLETDSG----RAEFAHAELGPGRVQVEF 199
                 7889*****************997652222222279****************9999....899999999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1791.32
//
Query:       KIR65606.1  [L=347]
Description: transcription elongation factor NusA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-28   97.8   0.1    5.9e-27   93.5   0.0    2.7  3  KH_5      NusA-like KH domain
      2e-19   70.1   0.0    4.5e-09   36.7   0.0    2.3  2  NusA_N    NusA N-terminal domain
    0.00096   18.9   0.0       0.71    9.7   0.0    2.5  2  KH_1      KH domain
     0.0083   16.4   0.2       0.11   12.9   0.3    2.4  2  S1        S1 RNA binding domain


Domain annotation for each model (and alignments):
>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.097   4.3e+02      19      36 ..     104     121 ..      89     165 .. 0.67
   2 !   93.5   0.0   1.3e-30   5.9e-27       1      69 []     210     278 ..     210     278 .. 0.98
   3 ?   -2.9   0.0       1.7   7.7e+03      23      44 ..     299     319 ..     296     321 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.097
        KH_5  19 vGaivgkkGsrikavsse 36 
                  G+ vg+ G+ +  v++ 
  KIR65606.1 104 FGEYVGRDGDLVTGVVQA 121
                 489999999999988876 PP

  == domain 2  score: 93.5 bits;  conditional E-value: 1.3e-30
        KH_5   1 aGertkvaVkshnpnvdpvGaivgkkGsrikavsseLkgekidvvewseDlaefianalsPaevlsVki 69 
                 aG+rtk+aV+s+ p v++ Ga++g +G+r++av+seL+gekid+++ws+D+a+f+ nalsPa+ l+V++
  KIR65606.1 210 AGHRTKIAVRSTTPGVNAKGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEV 278
                 69**************************************************************99985 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.7
        KH_5  23 vgkkGsrikavsseLkgekidv 44 
                 +g++G++ + +   L g +id+
  KIR65606.1 299 IGREGQNAR-LAARLTGWRIDI 319
                 888888876.555666777776 PP

>> NusA_N  NusA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0     1e-12   4.5e-09       4      58 ..       6      60 ..       5      63 .. 0.93
   2 !   31.8   0.0   3.3e-11   1.5e-07      87     119 ..      66      99 ..      59     101 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1e-12
                CCCCCCCCCS---HHHHHHHHHHHHHHHHHCCT-SSS-EEEEE-TTT--EEEEEE CS
      NusA_N  4 ealeelakekgiskevviealeeaLakaykknygedenveveidretgeikvysk 58
                 al++l++e++i+ ++++ a+e+aL++ay+   g++ +++veidr+tg   vy++
  KIR65606.1  6 AALRALEREREIPFDTILAAIETALLTAYRHTDGAEPHARVEIDRKTGAALVYAQ 60
                799****************************9888778************99987 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 3.3e-11
                 TBEEEE.E----SSCCHCHHHHHHHHHHHHHHHC CS
      NusA_N  87 Gdtvee.evtpkdfgriaaqtakqvivqkireae 119
                 G +v+e + tp+dfgriaa+takqvi+q++rea 
  KIR65606.1  66 GTVVREwDDTPHDFGRIAAMTAKQVILQRLREAT 99 
                 7788887558**********************97 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00016      0.71      11      41 ..     228     260 ..     223     276 .. 0.85
   2 !    6.7   0.0    0.0015       6.6       1      40 [.     285     323 ..     285     337 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00016
                 HHHHHTGGGHHHHHHHHHH.T-EEEEES.STT. CS
        KH_1  11 vgriIGkgGsnIkeIreet.gakIkvpk.sede 41 
                  g+ IG+ G++++  ++e  g kI++++ s+d+
  KIR65606.1 228 KGACIGPMGQRVRAVMSELhGEKIDIIDwSDDP 260
                 5889*************999*******888775 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0015
                 EEEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT CS
        KH_1   1 tlrilvPsslvgriIGkgGsnIkeIreetgakIkvpksed 40 
                 t r++vP  + ++ IG+ G+n +   + tg +I++  s++
  KIR65606.1 285 TARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIR-SDA 323
                 56899******************999999****976.443 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.17   7.8e+02      19      45 ..      43      69 ..      37      79 .. 0.78
   2 !   12.9   0.3   2.4e-05      0.11       5      72 ..     112     175 ..     110     178 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.17
                EEEEEET.TTEEEEEEGGGSSSSCEESC CS
          S1 19 GafVelg.ngvegfvpaselsrdarved 45
                +a+Ve++     ++v a el++d  + +
  KIR65606.1 43 HARVEIDrKTGAALVYAQELDDD-GTVV 69
                699****8889999999999999.4444 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.4e-05
                 TCEEEEEEEEEET....TEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEE CS
          S1   5 gevveGeVtsvtk....gGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriil 72 
                 g+ v+G+V+  +     g + V+lg + eg +p se+        p+e++  G++++ +v  v k  r++++
  KIR65606.1 112 GDLVTGVVQAHEArsekGIVSVDLG-KLEGVLPQSEQV-------PGERYAHGERIRCVVVHVAKGMRGPQI 175
                 888999998655444438899****.**********99.......*****************9998887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2581.69
//
Query:       KIR65607.1  [L=1007]
Description: translation initiation factor IF-2 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-35  120.8   0.6    7.1e-35  119.3   0.6    1.8  1  IF-2         Translation-initiation factor 2
    2.6e-34  118.5   6.4    6.6e-34  117.2   2.4    2.5  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    8.4e-21   73.6   0.0    1.6e-13   50.2   0.1    2.7  2  IF2_N        Translation initiation factor IF-2, N-terminal r
    2.4e-09   37.5   2.1    3.3e-05   24.2   0.2    3.0  2  GTP_EFTU_D2  Elongation factor Tu domain 2
    1.4e-08   34.8   0.1    2.5e-08   34.0   0.1    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
    7.8e-05   22.3   0.0    0.00014   21.5   0.0    1.3  1  Ras          Ras family
    0.00059   19.3   0.0     0.0019   17.7   0.0    1.8  1  SRPRB        Signal recognition particle receptor beta subuni
     0.0063   16.0   0.1      0.015   14.8   0.1    1.7  1  FeoB_N       Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.013   15.7   0.0      0.022   15.0   0.0    1.4  1  Roc          Ras of Complex, Roc, domain of DAPkinase
      0.017   15.0   0.2        0.1   12.5   0.1    2.2  2  RsgA_GTPase  RsgA GTPase
      0.049   13.1   0.0      0.088   12.3   0.0    1.3  1  Arf          ADP-ribosylation factor family
       0.18   11.6   0.2        0.8    9.4   0.2    2.0  1  PduV-EutP    Ethanolamine utilisation - propanediol utilisati


Domain annotation for each model (and alignments):
>> IF-2  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   0.6   4.8e-38   7.1e-35       2     104 ..     790     896 ..     789     897 .. 0.94

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 4.8e-38
                 CCHHHCCCSCS.SCCEEEEEESSHHHHHHHHHHHHCTT..SSTEEEECEEEESSB-HHHHHHHHHST..EEEEEESSSCTHHHHHCCCCCTSEEEEESS CS
        IF-2   2 eelfeeikeeg.kelnviikaDvqGsleAlkeaLekles.eevkvkvihsgvGaitesDvelasasn..aiiigFnvkvskkakklaekegvkirlynv 96 
                 e+l+e++ke +  +ln+++k+Dv+Gs+eAl++aL +l+  eev++++ih gvGaitesDv+lasas+   +iigFnv++ +k++++a++egv+ir+y+v
  KIR65607.1 790 ETLMEQLKEGEkTSLNLVLKGDVSGSVEALEDALFNLDIpEEVQLRIIHRGVGAITESDVMLASASSeaVTIIGFNVRAANKVREMADREGVEIRYYTV 888
                 78999999777899***********************77**************************655689**************************** PP

                 HHHHHHHH CS
        IF-2  97 IYkliddv 104
                 IY++i+++
  KIR65607.1 889 IYQAIEEI 896
                 ******98 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   2.4   4.4e-37   6.6e-34       5     190 ..     502     663 ..     498     666 .. 0.90
   2 ?   -4.3   0.1       7.2   1.1e+04       7      26 ..     683     702 ..     682     719 .. 0.75

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 4.4e-37
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE..TTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEE CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle..ketkkylinliDtPGHvdFskevirglrvlDgavlvv 101
                  ++++ghvDhGKt L+d++ +++                    + ++ giT ++ a +++  +e++++ +++iDtPGH+ F+    rg++v+D++vlvv
  KIR65607.1 502 VVTVMGHVDHGKTKLLDAIRKANV------------------VAGEAGGITQHIGAYQVHvpHEGEDRAVTFIDTPGHEAFTAMRARGAQVTDIVVLVV 582
                 589***************993332..................334578**********99877************************************ PP

                 ETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU 102 daveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealve 190
                 +a++Gv+pqt e l++a++ +vpi+v++NK+D+++a+ +++ +++ +        l + ++ g  ++ +v ++a+ g g+++llea+  
  KIR65607.1 583 AADDGVMPQTIEALNHAKAADVPIVVAVNKVDKPEANPDKVRQQLTEYG------LVAEEYGG--DTMFVNVAAKPGIGIDDLLEAVLL 663
                 *********************************************9444......66666666..599*****************9975 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 7.2
                 EEEESTTSSHHHHHHHHHHH CS
    GTP_EFTU   7 giighvDhGKtTLtdrLlyk 26 
                 +i +h+D+G   +   L++k
  KIR65607.1 683 AIEAHLDKGRGAVATVLVQK 702
                 6889***9998887777765 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.1   1.1e-16   1.6e-13       3      51 ..       4      51 ..       2      54 .. 0.95
   2 !   20.6   0.0     2e-07   0.00029       5      53 ..     419     465 ..     416     466 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1.1e-16
       IF2_N  3 kirVyeLAkeLgvkskevikkLfkelGievkshsssLDeetaeliaeef 51
                k rV+eLAkeLgv+sk v++kL ke+G  vks+ss++++ +a  ++++f
  KIR65607.1  4 KARVHELAKELGVESKTVLAKL-KEMGEFVKSASSTVEAPVARRLRNAF 51
                89********************.88******************999988 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 2e-07
       IF2_N   5 rVyeLAkeLgvkskevikkLfkelGievkshsssLDeetaeliaeefgi 53 
                 + +++A++++  +  +++++f+ lG + +++++s ++et+ l+ e++g+
  KIR65607.1 419 SLSDFADKINANPGSLVQEMFN-LGEM-VTATQSCSDETLLLLGEHLGF 465
                 689*******************.****.******************997 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00016      0.24       1      43 [.     693     728 ..     693     758 .. 0.82
   2 !   24.2   0.2   2.2e-08   3.3e-05       1      73 [.     928     996 ..     928     997 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhe 43 
                  G va++ v  Gtl+ Gd ++ +g +       +r+++++ +++
   KIR65607.1 693 GAVATVLVQKGTLRAGDSIVAGGAH-------GRVRAMLDENG 728
                  89******************96643.......78888777766 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 2.2e-08
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEE..EEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskke..ivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  G +++++v sG+++++ + r+l+  +          +issl +f+ d +e+++g  +G+ +++  +++ ++vGd++
   KIR65607.1 928 GNISGCIVRSGIIRRNAKARLLRdGS----VvaDNLTISSLKRFKDDATEVREGFECGLTLGG--YNN-VQVGDVI 996
                  678999***************77444....34579***************************8..***.9****98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.1   1.7e-11   2.5e-08       2     114 .]     503     612 ..     502     612 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.7e-11
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE....ETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk....lkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldee 96 
                 v ++G+   GK+ L+ a+ ++++ +++  g T++i  ++v+     +++ ++++DtpG  e         +a  a + +d+++lvv a  +++ p+  e
  KIR65607.1 503 VTVMGHVDHGKTKLLDAIRKANVVAGEAGGITQHIGAYQVHvpheGEDRAVTFIDTPG-HE----AFTAMRARGA-QVTDIVVLVVAAD-DGVMPQTIE 594
                 789********************************999999776433489********.44....3333333333.3369999999877.779999889 PP

                 HHHHHHHTTSEEEEEEES CS
    MMR_HSR1  97 leelleeakkplilvlnk 114
                   +  + a+ p+++++nk
  KIR65607.1 595 ALNHAKAADVPIVVAVNK 612
                 8888888*********98 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   9.3e-08   0.00014       3     157 ..     504     662 ..     502     666 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 9.3e-08
                 EEEESTTSSHHHHHHHHHHSSCSSSCT..TTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   3 vlvGdsavGKtslllrfvkdkFkeeye..sTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                  ++G    GKt ll    k +         T ++  y+ ++  +g++  ++  DT G e f+++r    + ++ ++lv + ++      + + +e +++
  KIR65607.1 504 TVMGHVDHGKTKLLDAIRKANVVAGEAggITQHIGAYQVHVPHEGEDRAVTFIDTPGHEAFTAMRARGAQVTDIVVLVVAADDGV----MPQTIEALNH 598
                 57888899999999887777776554411577778999999999**********************9999999999997777654....4577788888 PP

                 HSTTTSEEEEEEETTTGGG..G-SS-HHHHH..HHHHHHT..SEEEEEBTTTTCTHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDlee..kravsteege..elakelg..lkfletSAktnenveeafeell 157
                  +  +vpiv+  nKvD  e    +v+++  e   +a+e+g  ++f++++Ak   ++++++e++l
  KIR65607.1 599 AKAADVPIVVAVNKVDKPEanPDKVRQQLTEygLVAEEYGgdTMFVNVAAKPGIGIDDLLEAVL 662
                 88899***********988663455554333114889988899*************99998876 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.3e-06    0.0019       2     137 ..     499     627 ..     498     633 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.3e-06
                 ---EEEEE-STTSSHHHHHHHHHHSS---B---S..S-EEETTG......GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHH CS
       SRPRB   2 skpavllvGlsdsGKTslftrLttdsvkktvtSq..essaalkv...ksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkev 95 
                 ++p v ++G  d GKT l+  + + +v    +    +   a++v   ++ ++  +t+iD PGhe +           +++  +v +v  ++d+  + ++
  KIR65607.1 499 RAPVVTVMGHVDHGKTKLLDAIRKANVVAGEAGGitQHIGAYQVhvpHEGEDRAVTFIDTPGHEAFTAMRARG----AQVTDIVVLV-VAADDGVMPQT 592
                 678999*****************998887776543344556666767788999***********997655444....5555555444.34455555556 PP

                 HHHHHHHHHHHHHHTT---EEEEEE-TTSTT---HHHHHHHH CS
       SRPRB  96 AEllyeilliteklkdavdiliACnKqelflakspklikdaL 137
                  E l         +   v+i++A nK +   a ++k+ +++L
  KIR65607.1 593 IEALN------HAKAADVPIVVAVNKVDKPEANPDKV-RQQL 627
                 66554......34456789999999999999987665.5554 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1     1e-05     0.015       3     132 ..     503     630 ..     501     661 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1e-05
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE....TTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklkl....kgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatnlernLyL 97 
                 v+++G  + Gkt l++a+ +a+   g   G+t      ++++    +++ v+++D PG  +++a+      ++d++      v+v  +d   + +++  
  KIR65607.1 503 VTVMGHVDHGKTKLLDAIRKANVVAGEAGGITQHIGAYQVHVphegEDRAVTFIDTPGHEAFTAMRARGAQVTDIV------VLVVAADDGVMPQTIEA 595
                 7899****************************8776666555444466899*******998888765554444444......34455566778899999 PP

                 HHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHH CS
      FeoB_N  98 tlqllelgvpvvlalnmideaekkgieidlkkLse 132
                 +      +vp+v+a+n++d+ e++  ++ ++  + 
  KIR65607.1 596 LNHAKAADVPIVVAVNKVDKPEANPDKVRQQLTEY 630
                 99999999***********9998887776665444 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.5e-05     0.022       3     120 .]     504     615 ..     502     615 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.5e-05
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHHHH CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWlke 101
                  ++G    GKt+ll+ + + ++   e   i   +   +v ++ +     + ++  + + Dt G+e f +++    +  ++++lv+ ++ +  + + ++ 
  KIR65607.1 504 TVMGHVDHGKTKLLDAIRKANVVAGEAGGITQHIGAYQV-HVPH-----EGEDRAVTFIDTPGHEAFTAMRARGAQVTDIVVLVVAAD-DGVMPQTIEA 595
                 6789999***************99988877777776665.3333.....3345578899************99999999999988654.4455666777 PP

                 HHHH.CSSS-EEEEEE-TTT CS
         Roc 102 lkkv.agkspvilvgnkiDl 120
                 l++  a + p+++ +nk+D+
  KIR65607.1 596 LNHAkAADVPIVVAVNKVDK 615
                 765515677999999***95 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.67     1e+03     101     125 ..     502     526 ..     488     567 .. 0.63
   2 ?   12.5   0.1     7e-05       0.1      10      85 ..     568     647 ..     550     662 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.67
                  EEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelel 125
                  +++++G+   GK+ L++a++  + +
   KIR65607.1 502 VVTVMGHVDHGKTKLLDAIRKANVV 526
                  6778888888888888888876433 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 7e-05
                  TTTEES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH.....HHHHHHHHHHHTTSEEEE--TT CS
  RsgA_GTPase  10 rpkvaNvdqllivvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeee.....eleelkeelealgyevllvsak 85 
                  r + a v+ ++++v ++++ + +++++ +L +a+++++++v+++nK+D  e +      +l+e+    e++g ++++v++ 
   KIR65607.1 568 RARGAQVTDIVVLVVAADDGVMPQTIE-ALNHAKAADVPIVVAVNKVDKPEANPdkvrqQLTEYGLVAEEYGGDTMFVNVA 647
                  455677777777666666999999998.8*******************998877544444445555556666666666655 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.9e-05     0.088      21     146 ..     507     633 ..     493     662 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.9e-05
                 ESTTSSHHHHHHHHHHSSCEE...CSSSSSEEEEEEEE....TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGC CS
         Arf  21 GLDnaGKtTilkklkleelvt...tvPTigfnveelei....knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeee 112
                 G    GKt +l  +++ ++v       T++    ++++    ++  +t+ D  G+e    +  +  + td v+ vv  ad   + ++ e     l++ +
  KIR65607.1 507 GHVDHGKTKLLDAIRKANVVAgeaGGITQHIGAYQVHVphegEDRAVTFIDTPGHEAFTAMRARGAQVTDIVVLVVA-ADDGVMPQTIEA----LNHAK 600
                 55556777777777777777643323355555555555555567778888999999888888888888888777775.555666665544....57899 PP

                 CTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS CS
         Arf 113 lkevallvlaNKqDlpealseeelrellgleelk 146
                  ++v+++v  NK D pea   +++r++l+ + l 
  KIR65607.1 601 AADVPIVVAVNKVDKPEAN-PDKVRQQLTEYGLV 633
                 9***************985.66777777776654 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   0.00054       0.8       4     120 ..     503     632 ..     501     661 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00054
   PduV-EutP   4 illiGkvgsGKttLtqalkgeelkYkk....tqaiefsd.........ev...iDtPGeylenrklysalivt.saeadvialvqdate...eesvfpp 82 
                 + ++G+v+ GKt L  a+++ ++        tq i  ++         ++   iDtPG      +  +a+++  +  +d+++lv++a++   ++++ + 
  KIR65607.1 503 VTVMGHVDHGKTKLLDAIRKANVVAGEaggiTQHIGAYQvhvphegedRAvtfIDTPGH-----EAFTAMRARgAQVTDIVVLVVAADDgvmPQTIEAL 596
                 56899999999999999999665443222236666555411111111122223677773.....33445544404456899999888762224555566 PP

   PduV-EutP  83 gfasvfnkeviGiitkidlaedeenieaveelLksaGa 120
                 + a+    +++  + k+d++  e+n ++v+++L++ G 
  KIR65607.1 597 NHAKAADVPIVVAVNKVDKP--EANPDKVRQQLTEYGL 632
                 77888889999999999999..8888999999988774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1007 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1034  (0.0576719); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.93u 0.29s 00:00:01.22 Elapsed: 00:00:00.49
# Mc/sec: 6229.21
//
Query:       KIR65608.1  [L=97]
Description: hypothetical protein TK50_09540 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-26   91.9   0.0    1.8e-26   91.8   0.0    1.0  1  DUF503    Protein of unknown function (DUF503)


Domain annotation for each model (and alignments):
>> DUF503  Protein of unknown function (DUF503)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.0     1e-30   1.8e-26       2      87 ..       4      89 ..       3      90 .. 0.95

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 1e-30
      DUF503  2 gvltlelrl.pdvrSLKeKRsvvkslieklrnrfnvSvaEvdeqdlwqraeigvavvsnsrahveevldkvlrfieanpeaelldve 87
                g++ ++l+l +d+rSLK KRs+v+++++ lr+ f+vS+aEv++ dl+ raei+vavv+++ ahv+evld+++r+++ +pe+ell+v+
  KIR65608.1  4 GTVVFDLLLpGDSRSLKTKRSYVRPIVAALRR-FEVSAAEVGALDLHGRAEIAVAVVAAEGAHVREVLDSCERLVAGRPEVELLSVR 89
                678889999558*******************9.***************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 757.87
//
Query:       KIR65609.1  [L=346]
Description: phosphoesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-09   36.1   0.2    1.7e-08   35.0   0.2    1.6  1  DHHA1     DHHA1 domain
    4.8e-07   29.9   0.0    9.3e-07   29.0   0.0    1.4  1  DHH       DHH family


Domain annotation for each model (and alignments):
>> DHHA1  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.2   1.9e-12   1.7e-08      50     136 ..     259     337 ..     240     343 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.9e-12
                 CHHHHHHHHHHHHHHTHGBTTCEEEEEEEECT.EEEEEEEESSHSS-HHHHHHHHHHHTTCCEEEETCEEEEEEEHCHHHHHHHHHHH CS
       DHHA1  50 ewdagalgiaadklksklkkpvivfvakeegd.kvkvsarskkdgvdagelakeaaaklgggGGGHdlAaGagipaekleealealee 136
                 + ++ +l+ ++d ++ + + + +  v+k+  + +++vs+rsk+  vd++ +a +      +gGGGH +AaG++   ++++++++ +++
  KIR65609.1 259 DQRPYVLEALIDSVRCTAE-ADVSCVVKQVRPdEWAVSMRSKG-AVDVSRVAVA------LGGGGHTFAAGFTGR-GSADDVVASIRA 337
                 5566778888888888444.4555555555555**********.**********......***********9984.666777766654 PP

>> DHH  DHH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0     1e-10   9.3e-07       2     100 ..      34     176 ..      33     179 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1e-10
                 EEEE-ECSSSHHHHHHHHHHHH..............................................CECS--TCGGCGC.CHHCCCSEEEEEEE-S- CS
                 xxxxxxxxxxxxxxxxxxxxxx..............................................xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
         DHH   2 ilivghknpDtDsigSaialan..............................................llvDhneksqave.geakeeaedviiiDHHr 53 
                 + +++h npD+D++gS++++                                                ++ D  ++s+     +  ++a + +++DHH+
  KIR65609.1  34 VQLICHVNPDGDALGSMLGFGLglrqlgvrqlratfpgppevpepfralpgldllvpeedaypapdlvVCFDAASESRLGGlVDRLATAGTALVLDHHA 132
                 55789**************999999999999999999999999999998888888888888888887778888888876531346888999******** PP

                 --SS---SS--EEEE-SSS-HHHHHHHHHHHTT----HHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         DHH  54 lgeefetlapilflnepvgstaeivaelleekkeeiskeiaellllg 100
                 ++   +++  i ++++ +++t+ ++ ell + ++++++ iae l+++
  KIR65609.1 133 SN---TRFGGINLVDPRAAATSVVAEELLARLGVRLDAGIAEGLYVA 176
                 *7...555566899***************************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2431.08
//
Query:       KIR65610.1  [L=135]
Description: hypothetical protein TK50_09555 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1045.12
//
Query:       KIR65611.1  [L=70]
Description: hypothetical protein TK50_09560 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 577.24
//
Query:       KIR65612.1  [L=294]
Description: tRNA pseudouridine synthase B [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-50  171.7   0.1    2.5e-50  170.7   0.0    1.5  2  TruB_N    TruB family pseudouridylate synthase (N terminal do
    2.4e-18   65.7   5.4    3.7e-18   65.0   1.8    3.0  2  TruB_C    tRNA Pseudouridine synthase II, C terminal
    6.2e-11   42.3   0.2    1.6e-10   41.0   0.2    1.7  1  TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain
  ------ inclusion threshold ------
      0.067   13.3   0.1       0.12   12.5   0.1    1.4  1  DKCLD     DKCLD (NUC011) domain


Domain annotation for each model (and alignments):
>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.7   0.0   5.6e-54   2.5e-50       1     149 []      25     178 ..      25     178 .. 0.98
   2 ?   -2.7   0.0       1.6     7e+03       9      18 ..     250     259 ..     244     260 .. 0.80

  Alignments for each domain:
  == domain 1  score: 170.7 bits;  conditional E-value: 5.6e-54
                 HHHTT-S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE----------- CS
      TruB_N   1 krllkakkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGeieqvppmySAvk 99 
                 +rl ++++vGh+GtLDp+atGvLv++vg+aT+ll+y+  a K+Y at+rlg++t t+Daeg++++ + ++++ +e+++++++++tG+i+qvp+++SA+k
  KIR65612.1  25 RRLARTRRVGHGGTLDPMATGVLVIGVGRATRLLTYVIGAGKSYAATVRLGQATVTDDAEGDVITVTPADAVADEAVRAAFAALTGDIDQVPSAVSAIK 123
                 78999***********************************************************9988******************************* PP

                 ----------------------EEEEEEEEEEEEEE.....EEEEEEEESTTTTH CS
      TruB_N 100 vnGkrlyelaregeeverkkrkvtiyelelleveep.....evelevecskGtYi 149
                 +nG+r+y+ +r ge+v++++r+vt+++l++l+v+++     +v+++v+cs+GtYi
  KIR65612.1 124 INGERAYKRVRDGESVDLPARRVTVSRLDVLAVRRDtpgvvDVDIDVTCSSGTYI 178
                 *********************************99999****************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.6
                 EEESS---TT CS
      TruB_N   9 vGhtGtLDpl 18 
                   h+G LDp 
  KIR65612.1 250 LSHGGPLDPV 259
                 57******95 PP

>> TruB_C  tRNA Pseudouridine synthase II, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       0.2   8.8e+02      10      23 ..      29      42 ..      27      48 .. 0.80
   2 !   65.0   1.8   8.3e-22   3.7e-18       1      55 [.     237     291 ..     237     292 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.2
                HHHHHHTT---B-- CS
      TruB_C 10 eArdlrhGrrLeaa 23
                + r+++hG  L++ 
  KIR65612.1 29 RTRRVGHGGTLDPM 42
                5799*****99984 PP

  == domain 2  score: 65.0 bits;  conditional E-value: 8.3e-22
                 SEEEE--HHHHHHHHTT---B-----S-EEEE-TTS-EEEEEEEETTEEEEEEES CS
      TruB_C   1 FprrdvteaeArdlrhGrrLeaagikgvvAaiaPdGrliALleerggrarsvvVf 55 
                 Fprr+ t++eA  l+hG +L+++gi+g++A++ PdG liA++ er+grar+  V+
  KIR65612.1 237 FPRREATADEAKVLSHGGPLDPVGIAGPYAVFGPDGALIAIVSERDGRARAEIVL 291
                 9**************************************************9998 PP

>> TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.2   3.6e-14   1.6e-10       1      41 [.     179     219 ..     179     233 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 3.6e-14
                 HHHHHHHHHHTTS-EEEEEEEEEEETTEGG-..B-HHHHHH CS
    TruB_C_2   1 RtLcdDiGeaLgcgAhveeLRRtrvgpfdeedmvtledLed 41 
                 R L++D G+aLg+g+h+++LRRt+vg f   ++ tl++Le 
  KIR65612.1 179 RALARDAGLALGVGGHLTALRRTAVGGFALGEAATLDELER 219
                 99**************************99999******98 PP

>> DKCLD  DKCLD (NUC011) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.6e-05      0.12      42      58 .]       5      21 ..       3      21 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.6e-05
                EEEEEEE-SSS-HHHHH CS
       DKCLD 42 GvinLDKPsnPsSHEVV 58
                G+i +DKP + +SH+VV
  KIR65612.1  5 GLIVVDKPGGMTSHDVV 21
                99**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2436.05
//
Query:       KIR65613.1  [L=311]
Description: riboflavin kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-51  174.9   0.0    1.8e-51  174.2   0.0    1.3  1  FAD_syn          FAD synthetase
      1e-35  122.4   0.0    3.3e-35  120.8   0.0    1.9  3  Flavokinase      Riboflavin kinase
  ------ inclusion threshold ------
      0.012   16.2   0.3          4    8.0   0.0    3.4  3  ATPgrasp_N       ATP-grasp N-terminal domain
       0.06   13.5   0.0       0.11   12.7   0.0    1.5  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> FAD_syn  FAD synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.2   0.0     4e-55   1.8e-51       7     157 ..      16     166 ..      11     167 .. 0.98

  Alignments for each domain:
  == domain 1  score: 174.2 bits;  conditional E-value: 4e-55
     FAD_syn   7 gavvtlGnFDGvHlGHqallkkaveaakekglpsvvvtFephPrevlakekaparLttleeklelleelgvdavlvvdFtkefaelsaeeFiekllvek 105
                 ++vvt+G FDGvH+GHqa + ++v++a+e g++svvvtF+phP+ev+++ ++pa Lt+l++k+el+e+lgvd+++vv+Ft ef++l a++F++++lve+
  KIR65613.1  16 SSVVTIGVFDGVHRGHQATIGHTVARARELGVRSVVVTFDPHPAEVVRPGSHPAVLTELTRKAELIEALGVDVLCVVPFTPEFSRLPADAFVHDILVEH 114
                 68************************************************************************************************* PP

     FAD_syn 106 lkvkavvvGfdfrfGkkregdvellkelgaklgfevevvpkveleeekisst 157
                 l+++ vvvG++frfG++ +gdv+ll+elg+++gf ve +p v ++++  sst
  KIR65613.1 115 LHATLVVVGQNFRFGHRAAGDVALLEELGRTFGFAVEDAPLVAQDDTVFSST 166
                 **************************************************98 PP

>> Flavokinase  Riboflavin kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.4   1.1e+04      11      25 ..      35      49 ..      26      64 .. 0.64
   2 ?   -2.8   0.0       1.7   7.7e+03       7      25 ..     132     150 ..     129     166 .. 0.73
   3 !  120.8   0.0   7.3e-39   3.3e-35       1     111 []     184     308 ..     184     308 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.4
                 EES-SSCHTTTT--E CS
  Flavokinase 11 VvkGkkrGrelgfpT 25
                 + +   r+relg++ 
   KIR65613.1 35 IGHTVARARELGVRS 49
                 344445556666554 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.7
                  EEEEEES-SSCHTTTT--E CS
  Flavokinase   7 lsgkVvkGkkrGrelgfpT 25 
                    g V   +++Gr++gf  
   KIR65613.1 132 AAGDVALLEELGRTFGFAV 150
                  5677888889999999975 PP

  == domain 3  score: 120.8 bits;  conditional E-value: 7.3e-39
                  HTS-EEEEEEEES-SSCHTTTT--EEEEE-..S-B-GTSEEEEEEEE.........EEEEEEEETTTSSE...EEEEETT--S--TTSEEEEEEEEEE CS
  Flavokinase   1 LgrpyslsgkVvkGkkrGrelgfpTaNlel..ekllpkkGVYavrvk.........gvaniGvrptfknk...vEvhildfsedlygkelrvellkfl 84 
                  Lgrp++l+g Vv G++rGrelgfpTaNl +  + ++p++GVYa+++          +++++G++ptf+++   vE+h+ldfs+dlyg+++ +++++++
   KIR65613.1 184 LGRPHRLEGVVVLGDQRGRELGFPTANLLChpHAAVPADGVYAGWFLrkdgrermpAAISVGTNPTFSGRdrrVEAHVLDFSGDLYGERVALDFTEHV 281
                  89**************************98877788*******************************996789************************* PP

                  EE----SSHHHHHHHHHHHHHHHHHHH CS
  Flavokinase  85 RpekkFdsleaLkaqikkDvekarell 111
                  R + +Fd++e L+aq+++Dv+++r++l
   KIR65613.1 282 RGQVRFDGVEPLIAQMNQDVARIRRML 308
                  ***********************9986 PP

>> ATPgrasp_N  ATP-grasp N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0009         4       3      37 ..      41      74 ..      39      88 .. 0.73
   2 ?    0.2   0.0      0.25   1.1e+03      39      63 ..     172     196 ..     151     200 .. 0.74
   3 ?    3.4   0.0     0.026   1.2e+02      29      80 ..     256     310 ..     247     311 .] 0.84

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0009
                HHHHTT-EEEEEEETTS----S-TT.EEEEEEE-T CS
  ATPgrasp_N  3 aAkaLGikvvlvdeedewapeelaelvekfipldl 37
                +A++LG++ v+v+ + + a+  ++   + ++ ++l
  KIR65613.1 41 RARELGVRSVVVTFDPHPAEVVRPG-SHPAVLTEL 74
                8***********9998888766665.555555555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.25
                 T-HHHHHHHHHHHHHHS--SEEE-- CS
  ATPgrasp_N  39 qdpdaaleavralsrerpvdGivtf 63 
                  d +++ +a +al r ++++G+v +
  KIR65613.1 172 IDAGDVAAAAAALGRPHRLEGVVVL 196
                 5667777888888888888888765 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.026
                 EEEEEEE-TTT-...HHHHHHHHHHHHHHS--SEEE---GGGHHHHHHHHHHTT- CS
  ATPgrasp_N  29 vekfipldlaqd...pdaaleavralsrerpvdGivtftdlavplvArlaeaLgL 80 
                 + ++++ld++ d   +  al+  + +  + ++dG+  ++  +   vAr+ + Lg+
  KIR65613.1 256 RVEAHVLDFSGDlygERVALDFTEHVRGQVRFDGVEPLIAQMNQDVARIRRMLGI 310
                 56789999999966557888999999999******99999999999999999986 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.5e-05      0.11       2     143 .]      20     171 ..      19     171 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.5e-05
                      EEE--TT--HHHHHHH....HHHHHHSSES.EEEEEESSTHCSST-..SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHH...........HHH CS
  CTP_transf_like   2 agGtFDpiHlGHlrll....eqakklleed.livgvpsdeppkkkk..kplasaeeRlemlelakevdevisvdpweltr...........evl 77 
                      + G+FD +H GH + +     +a++l+  + ++ + p + ++ + +  + + ++ +R + l +a  vd  + v p++++             ++
       KIR65613.1  20 TIGVFDGVHRGHQATIghtvARARELGVRSvVVTFDPHPAEVVRPGshPAVLTELTRKAELIEALGVDV-LCVVPFTPEFsrlpadafvhdILV 112
                      78**********875422227788888887666666666666667567888888899999999977776.666677776677899988886666 PP

                      HHTTTTEEEEEEEHHHHHHHHCHH.......HHHHHHHHHHHEEEEEEHTTCEEEEEEECCTTTCSHHHHHHH CS
  CTP_transf_like  78 kklkpdklylvigadvledfsewk.......eleeilgnvklvvvsrpekqanvllkaekrtngiSstkirer 143
                      + l++    +v+g+         +        lee+ + ++++v++ p       l a+ +    Sst+ir+r
       KIR65613.1 113 EHLHAT--LVVVGQNFRFG----HraagdvaLLEELGRTFGFAVEDAP-------LVAQ-DDTVFSSTYIRAR 171
                      666666..77777754333....22346666999999999*****998.......5555.55599*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2507.40
//
Query:       KIR65614.1  [L=89]
Description: 30S ribosomal protein S15 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-37  127.4   2.2    2.1e-37  127.2   2.2    1.0  1  Ribosomal_S15  Ribosomal protein S15


Domain annotation for each model (and alignments):
>> Ribosomal_S15  Ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   2.2   1.1e-41   2.1e-37       1      81 []       8      88 ..       8      88 .. 0.98

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 1.1e-41
                   HHHHHHHHSSSTT-TSSHHHHHHHHHHHHHHHHHHHHCTTT-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCTST CS
  Ribosomal_S15  1 kkelikefqrhekDtGspevqiallterInnltehlkenkkDkhsrrgLlklvskRrkllkYLkrkdverYkklieklglr 81
                   k+++ +e++++e+DtGspevq+a+lt+rI +ltehlk +k+D+hsrrgLl+lv++Rr+ll+Y+++kd++rY++lie+lglr
     KIR65614.1  8 KAKIRAEYATAEGDTGSPEVQVAVLTKRIAELTEHLKVHKHDHHSRRGLLLLVGRRRRLLNYVQKKDINRYRSLIERLGLR 88
                   78999**************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 652.35
//
Query:       KIR65615.1  [L=793]
Description: polynucleotide phosphorylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-38  130.7   0.0    8.1e-20   71.7   0.0    2.4  2  RNase_PH    3' exoribonuclease family, domain 1
    4.8e-17   62.2   3.7    4.8e-17   62.2   3.7    1.9  2  PNPase      Polyribonucleotide nucleotidyltransferase, RNA bi
    2.6e-11   43.2   0.7    2.6e-11   43.2   0.7    1.9  2  KH_1        KH domain
    8.5e-11   42.1   0.2    1.7e-10   41.1   0.2    1.6  1  S1          S1 RNA binding domain
    4.6e-09   36.2   0.1      0.004   17.2   0.0    2.6  2  RNase_PH_C  3' exoribonuclease family, domain 2
    0.00038   20.2   0.1    0.00093   19.0   0.1    1.6  1  KH_2        KH domain
     0.0012   18.7   0.0     0.0012   18.7   0.0    2.2  3  KH_4        KH domain
  ------ inclusion threshold ------
       0.53   10.4   2.3       0.67   10.1   0.3    2.1  2  KH_5        NusA-like KH domain


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   3.6e-23   8.1e-20       3     132 .]      23     153 ..      21     153 .. 0.92
   2 !   56.8   0.0   1.4e-18   3.2e-15       2     132 .]     350     482 ..     349     482 .. 0.89

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 3.6e-23
                 EEEEEEES.SSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG.--CCEEEECCCCECCCCEC-C........S...HHHHHHHHHHHHHHCCTC-CCG CS
    RNase_PH   3 Rslsietg.vlsqanGSaylelGdtkvlasvtgpieerpseer.ddaegaldveveyapfasger.....rregrpsdeeielsrlleralrpsillek 94 
                 R+++++tg +++qa GS++ +lG+t vl + t+++++   +e+ d+++  l+v+ve  ++a+g++     rregrps+ +i+++rl++r lrps++   
  KIR65615.1  23 REITFSTGrLARQAAGSVVAQLGETVVLSATTAGKQP---KEQfDFFP--LTVDVEERMYAAGRIpgsffRREGRPSEDAILTCRLIDRPLRPSFVKGL 116
                 9**********************************99...55559***..************************************************9 PP

                 CCTCEEEEEEEEEECCC.S-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  95 kpkstididitvlssdg.gslldalinaaslALadagip 132
                 +  ++++++ tvl  d  +++  ++inaas+  + +g+p
  KIR65615.1 117 R--NEVQVVETVLALDPqHPYDVVAINAASMSTKLSGLP 153
                 9..677777777776665599999*******99999998 PP

  == domain 2  score: 56.8 bits;  conditional E-value: 1.4e-18
                 EEEEEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEE..E-TCCG.--CCEEEECCCCECCCCEC-C...S...HHHHHHHHHHHHHHCCTC-CCGCCT CS
    RNase_PH   2 lRslsietgvlsqanGSaylelGdtkvlasvtgpiee..rpseer.ddaegaldveveyapfasgerrregrpsdeeielsrlleralrpsillekkpk 97 
                 +R+l++e gvl++ +GSa++e G+t++l + t+      +  ++  +++ ++ + +++++p+++ge+ r g p+++ei    l eral p+++  ++  
  KIR65615.1 350 IRPLTAEVGVLPRVHGSALFERGETQILGVTTLNMLRmeQMVDTLsPENRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERALIPVLPSREEFP 448
                 8***************************999999955221222223444488***************88899**********************88878 PP

                 CEEEEEEEEEECCCS-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  98 stididitvlssdggslldalinaaslALadagip 132
                 + i+ + + l s+g s+ + +++a++l L++ag+p
  KIR65615.1 449 YAIRQVSEALGSNG-STSMGSVCASTLGLLSAGVP 482
                 **************.******************98 PP

>> PNPase  Polyribonucleotide nucleotidyltransferase, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   3.7   2.1e-20   4.8e-17       2      82 ..     269     345 ..     268     346 .. 0.96
   2 ?   -2.4   0.0       3.2   7.2e+03      28      47 ..     539     558 ..     538     572 .. 0.67

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 2.1e-20
                 HHHHHHTTTHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHH...HHSTTS-HHHHHHHHHHHHHHHHHHHHHHTS-TTTS- CS
      PNPase   2 leekvaelaeerisealtiteKqeRyaaldeikekvveafaaeleeedeedekeikeifkalekkvvRsrildegvRiDGR 82 
                 ++++va++a ++++eal+i +K +R++ald ik+kv+e++  +     e +eke+ ++f++l+k  vR+r+l+e+vRiDGR
  KIR65615.1 269 VYDAVADVARAEVAEALKIAGKADREEALDRIKAKVAEELGGRF----EGREKELSAAFRSLTKSEVRNRVLREQVRIDGR 345
                 7899*************************************776....889****************************** PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.2
                 HHHHHHHHHHHHHHH...HH CS
      PNPase  28 aaldeikekvveafaaelee 47 
                 ++ld i ++v++a++++  e
  KIR65615.1 539 TKLDGIPSDVLAAALQQAYE 558
                 67888888888888855544 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.7   8.4e+03      48      65 ..     285     301 ..     281     302 .. 0.83
   2 !   43.2   0.7   1.2e-14   2.6e-11       2      64 ..     585     641 ..     584     643 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.7
                 EEEEESHHHHHHHHHHHH CS
        KH_1  48 vtisGspeavekAkelie 65 
                 + i G+++  e+A+++i+
  KIR65615.1 285 LKIAGKAD-REEALDRIK 301
                 78999999.999999996 PP

  == domain 2  score: 43.2 bits;  conditional E-value: 1.2e-14
                 EEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT...T.-EEEEEE.SHHHHHHHHHHH CS
        KH_1   2 lrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedegsderevtisG.speavekAkeli 64 
                 +++++P +++g +IG++G++I+ I++etga I ++       d+ ++ +   +  + ++A+++i
  KIR65615.1 585 TTVKIPVDKIGMVIGPKGQTINAIQDETGAEISIE-------DDGTIYVGAtNGPSAQAAVDRI 641
                 789******************************76.......3568999444444577777777 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.2   7.7e-14   1.7e-10       2      68 ..     650     716 ..     649     721 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 7.7e-14
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTT CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrr 68 
                 p++ge++ G+V++   +Gaf+ l+ g +g++++s + + +rv++ ++ l vGd+v+v++ ++d   +
  KIR65615.1 650 PKAGERFLGTVVKTAAFGAFISLLPGRDGLLHISKVGDGKRVDKVEDFLNVGDKVEVEIADIDARGK 716
                 799***********************************9***********************98766 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.8e-06     0.004       1      50 [.     156     207 ..     156     235 .. 0.81
   2 !   16.5   0.0     3e-06    0.0066       1      66 [.     485     558 ..     485     559 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.8e-06
                 S--EEEEEEEETTEEEES--HHHHHHSSEEEEEEEETTS....EEEEEEEECSS CS
  RNase_PH_C   1 apviavtvgkvddqfvlDptkeEedlsegdltlavagtk....evvtlmkeggs 50 
                 +p++a +v+ vd+q v  pt+eE  l+ +  +++vag+     ev  +m e ++
  KIR65615.1 156 GPIGATRVAHVDGQWVAFPTLEE--LARATFDMVVAGRTladgEVAIMMVEAEA 207
                 599********************..**********8776676688788887665 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 3e-06
                 S--EEEEEEEETTE........EEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSC..EEHHHHHHHHHHHHH CS
  RNase_PH_C   1 apviavtvgkvddq........fvlDptkeEedlsegdltlavagtkevvtlmkeggsq..ldeetlleaielAkk 66 
                 apv+++++g++ d+         + D    E++   gd+++ vagt e vt ++++ +   ++ + l +a+  A++
  KIR65615.1 485 APVAGIAMGLISDEvegktryvTLTDILGAEDA--FGDMDFKVAGTPEFVTALQLDTKLdgIPSDVLAAALQQAYE 558
                 69**********9999999999999******55..56********************9999*************98 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   4.1e-07   0.00093      25      67 ..     583     625 ..     562     629 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.1e-07
                 CEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEE CS
        KH_2  25 nrviiviresqpgivIGkgGsnikkigkelrkdieklegkkVk 67 
                 + +++ i + + g+vIG +G++i++i+ e + +i +  ++ ++
  KIR65615.1 583 RVTTVKIPVDKIGMVIGPKGQTINAIQDETGAEISIEDDGTIY 625
                 5688999999***********************9866666666 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.3   2.8e+03       4      59 ..     273     328 ..     271     343 .. 0.68
   2 !   18.7   0.0   5.2e-07    0.0012      17      55 ..     570     609 ..     558     610 .. 0.78
   3 ?   -3.7   0.0       5.1   1.1e+04      11      31 ..     697     717 ..     694     720 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.3
        KH_4   4 vedilkalvddpeevevteeeeeeeveielnvegedlGrvIGkrGrtldAlqylvs 59 
                 v d+++a v ++ ++  ++++ee  ++i+ +v++e  Gr  G++ +   A + l++
  KIR65615.1 273 VADVARAEVAEALKIAGKADREEALDRIKAKVAEELGGRFEGREKELSAAFRSLTK 328
                 55666666655566777777889999999999999888887777666666666665 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 5.2e-07
        KH_4  17 evevtee.eeeeeveielnvegedlGrvIGkrGrtldAlq 55 
                 ++e  +e  e   ++ ++++  +++G vIG +G+t++A+q
  KIR65615.1 570 AIEAPAEmSEYAPRVTTVKIPVDKIGMVIGPKGQTINAIQ 609
                 555555545667788899999******************9 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 5.1
        KH_4  11 lvddpeevevteeeeeeevei 31 
                 +++  ++vev++ + + + +i
  KIR65615.1 697 FLNVGDKVEVEIADIDARGKI 717
                 566667888888855555554 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3    0.0003      0.67      16      37 ..     591     612 ..     584     619 .. 0.85
   2 ?   -1.9   0.1       1.6   3.7e+03      27      44 ..     688     706 ..     686     715 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0003
        KH_5  16 vdpvGaivgkkGsrikavsseL 37 
                 vd +G ++g kG+ i+a+ +e 
  KIR65615.1 591 VDKIGMVIGPKGQTINAIQDET 612
                 9*****************9986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.6
        KH_5  27 GsrikavsseLk.gekidv 44 
                 G+r+ +v++ L+ g k++v
  KIR65615.1 688 GKRVDKVEDFLNvGDKVEV 706
                 9999999999998888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 5053.87
//
Query:       KIR65616.1  [L=471]
Description: zinc protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-45  153.7   0.0    1.8e-42  145.4   0.0    2.1  2  Peptidase_M16_C  Peptidase M16 inactive domain
    5.8e-39  133.4   0.0    8.3e-39  132.9   0.0    1.2  1  Peptidase_M16    Insulinase (Peptidase family M16)
  ------ inclusion threshold ------
      0.064   13.0   0.2        1.2    9.0   0.0    2.4  2  Phage_Mu_Gp45    Bacteriophage Mu Gp45 protein


Domain annotation for each model (and alignments):
>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0014       8.6      92     169 ..      89     163 ..      65     173 .. 0.86
   2 !  145.4   0.0     3e-46   1.8e-42       2     180 ..     217     395 ..     216     397 .. 0.96

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0014
                      THTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHH CS
  Peptidase_M16_C  92 ndeddlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkke 169
                      + ++  a + l++lL  g + r   ++      ++ v+ + + ++   +++ +a + +e++  +++v+++++++   e
       KIR65616.1  89 TGPQAGAAHFLEHLLFKGTHKRTALEIS---AEIEAVGGETNAFTTKEYTCYYARVLDEDLPLAIDVMCDAVADSLLE 163
                      56788999**********9999999988...889******999999************************99876666 PP

  == domain 2  score: 145.4 bits;  conditional E-value: 3e-46
                      H-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSS.SSEEEEEEEEEECTCTHT CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkklde.eqahlslafegpskende 94 
                      +tr ++++fy+++Y++  +v+a++G++dh  +v+l+++ + + + +  p a+ ++++ tpa   +p   l + +e eqah+ l+ +g ++  d 
       KIR65616.1 217 MTRRQIQDFYRRHYTAPQIVVAAAGNLDHAVVVRLVREALAGTPLDTGPAAPAPHRSATPAVRVQPAATLVEPKEtEQAHVILGCPGIDR-VDG 309
                      5899****************************************99999999999999999888888887777777**************.*** PP

                      THHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS-HHHHHHHH CS
  Peptidase_M16_C  95 ddlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkkeglteeelerak 180
                      + +al vln++Lgggm+srL++++re++glaysv+++ ++y dsg+f ++a + p++v+ev+e+++++lr+++ +glte+e+ r k
       KIR65616.1 310 RRFALGVLNNVLGGGMSSRLFQEIRERRGLAYSVYSYASQYADSGVFAVYAGCAPGKVDEVLELTRAQLRRVAADGLTEAEVARGK 395
                      **********************************************************************************9976 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   0.0   1.4e-42   8.3e-39       1     148 [.      63     210 ..      63     211 .. 0.98

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 1.4e-42
                    EEEEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHH CS
  Peptidase_M16   1 rvalesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfk 96 
                    rv++e  p  +++++g++v +GSr+e+  ++G+AH+leh++fkgT k+++ ++ +e+e+ Gg+ nA+t++e+t+Yy+ vl++dl+ a+dv++d ++
     KIR65616.1  63 RVLTEAIPAMRSVSFGIWVSVGSRDETGPQAGAAHFLEHLLFKGTHKRTALEISAEIEAVGGETNAFTTKEYTCYYARVLDEDLPLAIDVMCDAVA 158
                    69999999**************************************************************************************** PP

                    SBTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTSGGGSHSS-T CS
  Peptidase_M16  97 aplleesevererkvvekeveavdaepekvveenlhaaayrekalgrsllgp 148
                    ++lle+ +ve+er v+++e+++ d+ep + v++  ++a y +++lgr ++g+
     KIR65616.1 159 DSLLEPADVETERGVILEEIAMHDDEPGDEVHDLFTRAVYGDHPLGRLISGT 210
                    **********************************************998877 PP

>> Phage_Mu_Gp45  Bacteriophage Mu Gp45 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.047   2.8e+02      46      67 ..     232     253 ..     228     267 .. 0.78
   2 ?    9.0   0.0   0.00019       1.2      46      80 ..     387     421 ..     364     427 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.047
                    XXXXXXXXXXXXXXXXXXXXXX CS
  Phage_Mu_Gp45  46 aeaivlavgGdrshgvviaved 67 
                    a  iv+a +G+ +h+vv+    
     KIR65616.1 232 APQIVVAAAGNLDHAVVVRLVR 253
                    6789*************97655 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00019
                    XXXXXXXXXXXXXXXXXXXXXX--S---SSSTT-E CS
  Phage_Mu_Gp45  46 aeaivlavgGdrshgvviavedrryRlkglkeGev 80 
                    +ea v+   G ++ + v++ ed+ +R++ l++Ge 
     KIR65616.1 387 TEAEVARGKGMSKGSFVLGLEDTGSRMSRLAKGEL 421
                    788899999************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3694.12
//
Query:       KIR65617.1  [L=160]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-10   41.2   0.0    1.9e-10   41.0   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
      1e-06   29.1   0.0    1.3e-06   28.7   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
      4e-05   24.3   0.0    5.1e-05   24.0   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
      6e-05   23.0   0.0      8e-05   22.6   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    0.00045   19.9   0.0    0.00052   19.7   0.0    1.2  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
     0.0038   17.2   0.0     0.0066   16.4   0.0    1.4  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   6.5e-14   1.9e-10      34     117 .]      58     139 ..      16     139 .. 0.84

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 6.5e-14
                     EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  34 gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYeklGF 117
                     + l+++ d++++G+++   ++d   g  +i +++V+ + +g+G+G a + +l+ ++  + g+ ++ l  ++dn aa  lY +lGF
      KIR65617.1  58 TSLAVYADDTVVGHVMWGVDDD---GARWIGGMVVDAAEQGRGVGAATVATLATWLCAQpGCAAVRLSYHPDNPAAAILYPRLGF 139
                     44558899*******9999999...9*****************************************666**************9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   4.3e-10   1.3e-06       7      75 ..      61     140 ..      36     141 .. 0.75

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 4.3e-10
                     EEEETTEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH......TTSEEEEE.EEEE.THHHHHHHHHHTTEE CS
  Acetyltransf_7   7 VaeddgkivGfialslld...aeitrlaVdpeyrgkGiGraLlea......aekgiile.qlel.naekaikfYeklGFe 75 
                      ++ d+ +vG +   ++d    +i++++Vd + +g+G+G a ++       a+ g+  +  ++  ++++a+ +Y +lGF 
      KIR65617.1  61 AVYADDTVVGHVMWGVDDdgaRWIGGMVVDAAEQGRGVGAATVATlatwlcAQPGCAAVrLSYHpDNPAAAILYPRLGFA 140
                     36678999999987777788777777*****************95445544226776443233344447888*******6 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.7e-08   5.1e-05      26     137 ..      25     139 ..       9     140 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.7e-08
  Acetyltransf_3  26 rylpepltleeaeewlera....waeeseeegyg.waivlkdtgviGsvglrdleeedeeaelgymlapsfwgkGyateavralleyafeelgle 115
                     r++   ++++++++w+ ++    + +  +++ ++ +a+   dt v+G v ++ ++++  ++  g++++ + +g+G++   v+ l +++ +++g  
      KIR65617.1  25 RAVADVAPRDDQRAWVYPMaaryLLTSLRGDVWTsLAVYADDT-VVGHV-MWGVDDDGARWIGGMVVDAAEQGRGVGAATVATLATWLCAQPGCA 117
                     3345566778888888877666522333344566688876777.9****.5557777776888899999999*********************** PP

  Acetyltransf_3 116 rlvavidkeNeaSirvleklGf 137
                      ++  ++++N+a + ++ +lGf
      KIR65617.1 118 AVRLSYHPDNPAAAILYPRLGF 139
                     *********************9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.7e-08     8e-05      34     114 ..      60     147 ..      45     152 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.7e-08
  Acetyltransf_10  34 lvaeeggkivGvi..elrdgs..hisllfVdpeyrgqGigkaLleaveee.aekdgikl.eltvnasp.yavpfYeklGFkavgeeqe 114
                      l+++ ++++vG++  +++d++   i+ ++Vd + +g+G+g+a + ++ +  + + g +  +l+ + ++ +a  +Y +lGF ++ge + 
       KIR65617.1  60 LAVYADDTVVGHVmwGVDDDGarWIGGMVVDAAEQGRGVGAATVATLATWlCAQPGCAAvRLSYHPDNpAAAILYPRLGFAPTGELED 147
                      6788999******77775555799************************997877777779*****99989999**********98765 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.7e-07   0.00052      78     143 ..      80     145 ..      32     147 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.7e-07
                     T-EEEEEEESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEEE CS
  Acetyltransf_8  78 gdrGiHlligeaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekekev 143
                     g r i  ++ +a++ g+g+++a + +l+ +l a+p+++ v +  +++N +a  l+ ++Gf++ +e+
      KIR65617.1  80 GARWIGGMVVDAAEQGRGVGAATVATLATWLCAQPGCAAVRLSYHPDNPAAAILYPRLGFAPTGEL 145
                     55555566778999************************************************9986 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.2e-06    0.0066      15      78 ..      74     140 ..      61     146 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.2e-06
                 EEEE-TT.SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHH.S-.S-EEEEEETT-HHHHHHHHHHT-E CS
        FR47  15 wilrkdg.gelgalqvlpehrrrGlgsrlvkalakeiae.rg.ktvllvvvasNtpsirlyeklGfe 78 
                 w +  dg   +g++ v+   ++rG g   v+ la  + +  g   v l   ++N ++  ly +lGf 
  KIR65617.1  74 WGVDDDGaRWIGGMVVDAAEQGRGVGAATVATLATWLCAqPGcAAVRLSYHPDNPAAAILYPRLGFA 140
                 66666665579************************998845524566888999*************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1223.22
//
Query:       KIR65618.1  [L=342]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-22   78.3   0.9      8e-22   78.3   0.9    2.5  2  Peripla_BP_3  Periplasmic binding protein-like domain
      5e-19   68.8   0.0    7.7e-19   68.2   0.0    1.2  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    2.9e-13   49.3   1.2      6e-13   48.4   1.2    1.6  1  LacI          Bacterial regulatory proteins, lacI family
    1.5e-06   28.0   0.0    2.8e-06   27.1   0.0    1.4  1  Peripla_BP_4  Periplasmic binding protein domain
  ------ inclusion threshold ------
      0.025   14.0   0.0      0.033   13.6   0.0    1.2  1  ZnuA          Zinc-uptake complex component A periplasmic
      0.061   12.8   0.4       0.17   11.3   0.4    1.8  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
       0.11   12.9   2.8        0.6   10.5   0.3    2.9  2  HTH_31        Helix-turn-helix domain
       0.12   12.4   0.4        0.2   11.6   0.4    1.3  1  HATPase_c_2   Histidine kinase-like ATPase domain
       0.23   11.3   2.0       0.34   10.8   0.0    2.1  2  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.44   8.7e+02      31      54 ..      37      60 ..      26     146 .. 0.57
   2 !   78.3   0.9     4e-25     8e-22       1     165 [.     176     341 ..     176     342 .] 0.79

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.44
                  HHHHHHHTTSSS-EEEEE-S-SS- CS
  Peripla_BP_3 31 rgfrqaleelglplnetvvaaddp 54
                  r++++a+ elg++ n+   + ++ 
    KIR65618.1 37 RRVQEAITELGYRANQAARQMRTG 60
                  455555555555544443333322 PP

  == domain 2  score: 78.3 bits;  conditional E-value: 4e-25
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH.HHCC-SEEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqal.klaalPtAviaasDelAlgvlqalrea 96 
                   ++hL++ Ghrri++ig  +  ++    er+ g+ ++l+e+g+++      + d  a+++   ++    l ++a++PtAv++asD+lAlg+lqa+r  
    KIR65618.1 176 TRHLLATGHRRIGYIGW-PLPTSAVGGERRSGWHETLREAGVDPGGLDRETVDGIAEGERTMRE----LlAAAEPPTAVVCASDSLALGALQAVRGS 267
                   68**************4.4444667889***************998877777665555555544....3255559********************85 PP

                   T--.......TT.TTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GG CS
  Peripla_BP_3  97 glr.......vP.edlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReS 165
                              P   ++v+gfdd+++   +   lT+v+qpl   + ++++ll  +l+g++   ++vll p+lv R++
    KIR65618.1 268 AAYappagppTPgGPVAVVGFDDTPV--AAAIGLTSVSQPLGVAAARCVDLLTGVLDGQPV-DSPVLLQPSLVRRQT 341
                   444244444466678*******9888..455679**********************76665.555566677****98 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   3.9e-22   7.7e-19      19     201 ..      84     266 ..      79     272 .. 0.81

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 3.9e-22
                   HHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EEEE-.HHHHHH.HHHHH CS
  Peripla_BP_1  19 lvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPcvipd.dtqage.estqk 112
                    + g+t++a+  g+ v+l  a +  +   +  dll a   d++++++     ++    a  ++p++  ++  dapd  P  + d d+ ag+ ++t++
    KIR65618.1  84 FLHGLTETAESAGYRVMLYTATDAHQEIdAFDDLLGAYDLDAFVLTGTERGDPRTAWLAGRDVPFVTFGRPWDAPDPHP--WVDvDNAAGTaQATRH 178
                   5789*************987766655551555788899********666554777777777**************7777..88888888888***** PP

                   HHHHHHHHTG..EEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE-SSHHHHHHHHHHHHH CS
  Peripla_BP_1 113 Liaeghkrpi..allegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..PeidaivaindeaalGavlalkk 201
                   L+a gh+r i  +  ++p+sa +  er+ G+ ++l+eaG +    + ++  + i +++  + ell     P+  a+v+ +d+ alGa +a+++
    KIR65618.1 179 LLATGHRR-IgyIGWPLPTSAVGG-ERRSGWHETLREAGVDPGGLD-RETVDGIAEGERTMRELLAAAepPT--AVVCASDSLALGALQAVRG 266
                   ********.966666778887765.6666***********333333.5566778888999999998877799..*************999865 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   1.2     3e-16     6e-13       1      46 []       6      51 ..       6      51 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 3e-16
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                ti  VA+ A VS +TVS vLn +  V+eetr rV +a+ el+Y+ n
  KIR65618.1  6 TISTVAEHARVSRQTVSNVLNAPHIVREETRRRVQEAITELGYRAN 51
                7889***************************************987 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.4e-09   2.8e-06      17     223 ..      85     295 ..      75     324 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.4e-09
                   HHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT.-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-HHHHHHHHH CS
  Peripla_BP_4  17 regleeaakelgaevtvvgdaendaaeQvaqiedaiakg.vdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayvgfdneaaGelqa 112
                     gl e a+ +g+ v +   + +da +++++++d++ +   d+++++ ++    ++a   ++ + +p+v+f ++  ++ +    v  dn a  +++ 
    KIR65618.1  85 LHGLTETAESAGYRVMLY--TATDAHQEIDAFDDLLGAYdLDAFVLTGTERGDPRTAW--LAGRDVPFVTFGRP-WDAPDPHPWVDVDNAAGTAQAT 176
                   5689999******99985..***************66555999999999987777554..566789********.7777778889999876555555 PP

                   HHHHHHCTTH.EEEEEE.TSCCCHHHHHHHHHHHHHHHHH...-T.TCEECCEEESTTTCHHHHHHHHHHHHHTT.TECEEEESSCCHHHCHHHHHH CS
  Peripla_BP_4 113 eylaeklggkkgkvvil.aGspgdpnaeeriegfrkvlke...yp.gikivaevaganwdaekaqqalealltan.pldgilaandgmaegaleale 203
                   + l+     +   + ++    p+++   er  g +++l+e   +p g+   +      +  +++ + + +ll+a  p  ++++a+d  a+gal+a++
    KIR65618.1 177 RHLLATGHRR---IGYIgWPLPTSAVGGERRSGWHETLREagvDPgGLDRET-----VDGIAEGERTMRELLAAAePPTAVVCASDSLALGALQAVR 265
                   5555555544...444424688888888************666554555544.....5889999999******66489******************* PP

                   HTTT....TSTEE......EEEES-HHHHH CS
  Peripla_BP_4 204 aagl....agkvv......vtgqDatpeal 223
                    + +    ag ++      v+g+D tp a 
    KIR65618.1 266 GSAAyappAGPPTpggpvaVVGFDDTPVAA 295
                   *66546663433378888899999998765 PP

>> ZnuA  Zinc-uptake complex component A periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.7e-05     0.033      54     113 ..      77     180 ..       8     184 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.7e-05
                 SSTTTSGTHHHHHHHHTTCCCEEEEETTTTCCSEBCSS............................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................................. RF
        ZnuA  54 nglelEtwldkllasssqatrvevidlsegveeeeeee............................................................. 91 
                 ng  l+ +l  l + +                     e                                                             
  KIR65618.1  77 NGSVLDRFLHGLTETA---------------------Esagyrvmlytatdahqeidafddllgaydldafvltgtergdprtawlagrdvpfvtfgrp 154
                 4444444444443333.....................0222222333333333334466677888888888888888999999999999999999**** PP

                 ....ESTGGGSHHHHHHHHHHHHHHH CS
                 ....xxxxxxxxxxxxxxxxxxxxxx RF
        ZnuA  92 ....DpHiWlspknaiamveniadaL 113
                     DpH W++++na+ ++++++  L
  KIR65618.1 155 wdapDPHPWVDVDNAAGTAQATRHLL 180
                 ********************999876 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   8.7e-05      0.17      28      49 ..       5      26 ..       1      27 [. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.7e-05
  HTH_Tnp_ISL3 28 rsvkavArqlgvSwtTVwrild 49
                   ++++vA++ +vS  TV ++l+
    KIR65618.1  5 VTISTVAEHARVSRQTVSNVLN 26
                  49*****************997 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3    0.0003       0.6      15      50 ..       5      39 ..       2      43 .. 0.86
   2 ?    1.2   0.7      0.23   4.6e+02      12      53 ..      45      87 ..      35      94 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0003
      HTH_31 15 LsqeevAerlgvsestlsrlEqGrrgrpspavleal 50
                ++   vAe+++vs+ t+s + ++ + ++++++ +++
  KIR65618.1  5 VTISTVAEHARVSRQTVSNVLNAPH-IVREETRRRV 39
                57788******************99.7999887775 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.23
      HTH_31 12 raGLsqeevAerlgvsestl..srlEqGrrgrpspavlealara 53
                + G +  ++A++ +  +s+l   r+E  r g    +vl++++++
  KIR65618.1 45 ELGYRANQAARQMRTGRSRLiaVRIEPTRDG-INGSVLDRFLHG 87
                4499999999999988877633566666666.666677776665 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4    0.0001       0.2       5      73 ..      11      82 ..       7      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
  HATPase_c_2  5 pehvrtvrevaeavlrr.aglseelldeirlaveEactNavehayleap..egpvevrlesdeealtvevaD 73
                 +eh r  r+ + +vl++ + + ee++ +++ a++E+ ++a ++a++ ++  +  + vr+e + + +  +v D
   KIR65618.1 11 AEHARVSRQTVSNVLNApHIVREETRRRVQEAITELGYRANQAARQMRTgrSRLIAVRIEPTRDGINGSVLD 82
                 6899999*******8888***************************988832355566666666666666655 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00017      0.34      17      39 ..       4      26 ..       1      28 [. 0.89
   2 ?   -1.5   0.6       1.3   2.5e+03       4      31 ..      33      61 ..      31      64 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlk 39
                + +++++A++  vsr+Tv+++l+
  KIR65618.1  4 KVTISTVAEHARVSRQTVSNVLN 26
                6799****************997 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
      HTH_23  4 ereRlrillllae.GlsvreIAreLgvsr 31
                e+ R r+  +  e G++  ++Ar++   r
  KIR65618.1 33 EETRRRVQEAITElGYRANQAARQMRTGR 61
                66777777777778999999999886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2440.07
//
Query:       KIR65619.1  [L=414]
Description: sugar ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-34  118.3   9.0    7.4e-34  117.8   9.0    1.2  1  SBP_bac_8  Bacterial extracellular solute-binding protein
    2.1e-29  103.5  10.8    2.9e-29  103.0  10.8    1.2  1  SBP_bac_1  Bacterial extracellular solute-binding protein
    0.00016   21.2   0.9       0.16   11.4   0.1    2.6  3  SBP_bac_6  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   9.0   1.2e-37   7.4e-34      15     274 ..      75     356 ..      49     363 .. 0.81

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 1.2e-37
                 EEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGS.TTHHH-.HHHHHTT--TS.----EEEEEEE-EEEEEHHHHHHS.... CS
   SBP_bac_8  15 nvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdl.dnlddl.tdalaavgydgklygvPyasetpyvliynkdlleka.... 107
                 +v++   +dl q+l  ala g+ pd  v++ +++ +a +a  g+l++  d     dd+ ++  ++++ydgkly+ P + +t  +l  n+dl+ ka    
  KIR65619.1  75 TVTP--AQDLTQQLGQALAGGSPPD--VFYVDASRFADYASVGALEPYGDRiSSPDDFyPSLRTTFTYDGKLYCAPKDFST-LALQINTDLWAKAgltd 168
                 4444..46999***********996..789999**************9955477777636699999**************8.8***********99999 PP

                 ..---BHHHHHHHHHHHHHH-SE...GG---GGGGGGTHH.......ETTEE---H..HHH.HHHHHHHHHHHHTT-.EE-S...--SS..TTTTTSBS CS
   SBP_bac_8 108 .edpktwdellaaakklkgkfgl...pdpasgwlqaalla.......kdgksldddggkdglkealellkklkdngk.tydtg.adavs..efanGeva 191
                  ++p+twd+l+aaa k+k k        ++ +   a+l++        dgk+ ++d ++++  +al++++++ d g   y+++ ++ +s  +f +G+++
  KIR65619.1 169 aDVPTTWDQLTAAARKIKAKGLVplaLGDTRDRIGAFLVQnggwlvsPDGKQATAD-TPEN-LAALQYVRTMLDEGLaRYPKQlDAGWSgeAFGKGKAV 265
                 9****************888755223467778778888884444566666666666.4444.8999*********9777766655555556******** PP

                 EEEE-TTHHHHHH-TTT..SEEEE.--....S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---BS-S-TTT..HHHH CS
   SBP_bac_8 192 ftingswdiaaaqkagk..klgai.vp....kqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektgyipvnksaal..spev 274
                 +ti g+w+  a+q++ +  k++++ +p     +g+++ ++ + v +++ ++++ A++F++ +t  ++q  +a++ g+ p+++s+ +  ++++
  KIR65619.1 266 MTIEGNWIKGALQNDFPdvKYRVVeLPagpkGKGTLSFTQCWGVAAKSRYKEQ-AIKFVEAMTAGDQQMTFAKAFGVMPSRQSVRDqyTAAF 356
                 *************8755125555565665544578888889***********9.******************************97444444 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0  10.8   4.9e-33   2.9e-29       7     314 ..      56     332 ..      49     333 .. 0.88

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 4.9e-33
                 HHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE. CS
   SBP_bac_1   7 gaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkilds. 104
                 ++a qa++ + + + + g   ++++   ++l q+l  a+a+G++p Dv++vd +++a++a+ g+l+p ++ +                ++++p+ +++ 
  KIR65619.1  56 TKAVQAAA-ATWAA-GSGNSATVTPA--QDLTQQLGQALAGGSPP-DVFYVDASRFADYASVGALEPYGDRISSP-------------DDFYPSLRTTf 136
                 44666777.77866.77888888666..999999999******66.************************99999.............56888889988 PP

                 EE...ES.EEEE.EEEEEEEETTTHHCTTGGG...SHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT..HHCSHHH CS
   SBP_bac_1 105 kv...ly.vPly.aargliYNkdlfekagldp...pwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgg..gldnpeg 193
                 ++   ly  P + ++ +l +N+dl++kagl+    p+tWd+l++aa+k+k+kg  p        a+g++     a++ ++gg +++ dg+  + d+pe 
  KIR65619.1 137 TYdgkLYcAPKDfSTLALQINTDLWAKAGLTDadvPTTWDQLTAAARKIKAKGLVP-------LALGDTRDRIGAFLVQNGGWLVSPDGKqaTADTPEN 228
                 88999*******99******************************************.......***************************966666666 PP

                 HSHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEB CS
   SBP_bac_1 194 vtaatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaip 292
                   a++y++ + +++      + ++ ++++++    +f +G+a m+i g+w          k+a+ +d +++  ++ v  lPag++gk+++  ++ +++ 
  KIR65619.1 229 LAALQYVRTMLDEG----LARYPKQLDAGWSG--EAFGKGKAVMTIEGNWI---------KGALQNDFPDV--KYRVVELPAGPKGKGTLSFTQCWGVA 310
                 66999999999555....68888888888888..8899*************.........77777777777..567888**********877777**** PP

                 TTCSTHHHHHHHHHHHTSHHHH CS
   SBP_bac_1 293 kgsknpeaAkkFldfllspeaq 314
                 ++s ++e+A kF++ +++ ++q
  KIR65619.1 311 AKSRYKEQAIKFVEAMTAGDQQ 332
                 *****************98887 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0003       1.8       3      81 ..      95     179 ..      56     188 .. 0.85
   2 ?   -2.5   0.0      0.46   2.7e+03     168     191 ..     205     229 ..     197     246 .. 0.72
   3 !   11.4   0.1   2.6e-05      0.16     171     234 ..     295     362 ..     222     369 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0003
   SBP_bac_6   3 lpdlilsfdkdflekfieeglfqpld..panlpnvnkdfaeeglkdpdgkyypygvgplvlavnkdrlkgrpv.....PksWaDLl 81 
                  pd+++ +d + ++ +++ g ++p+     +++++ ++++++ + d++ + +p + ++l l +n+d +++  +     P++W+ L+
  KIR65619.1  95 PPDVFY-VDASRFADYASVGALEPYGdrISSPDDFYPSLRTTFTYDGKLYCAPKDFSTLALQINTDLWAKAGLtdadvPTTWDQLT 179
                 699999.9999999999******99866344444444444444445466666****************9998888888*****997 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.46
   SBP_bac_6 168 vvwPedGalvspifmlvkkg.kkke 191
                 +++ + G+lvsp+     ++ +++ 
  KIR65619.1 205 FLVQNGGWLVSPDGKQATADtPENL 229
                 5666779999999999999843333 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 2.6e-05
   SBP_bac_6 171 Ped.Galvspifmlvkkg.kkkelakafidfllspevqailakaggvfPvv..tnpavlnelpegakl 234
                 P+  G+l ++ ++ v ++ + ke+a +f++ ++  + q  +aka+gv+P+   + ++    +p ++++
  KIR65619.1 295 PKGkGTLSFTQCWGVAAKsRYKEQAIKFVEAMTAGDQQMTFAKAFGVMPSRqsVRDQYTAAFPADKPF 362
                 66669*********************************************977555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2927.66
//
Query:       KIR65620.1  [L=359]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-21   74.6  14.8    7.9e-21   74.6  14.8    2.0  2  BPD_transp_1     Binding-protein-dependent transport system i
  ------ inclusion threshold ------
       0.94    9.5   3.3        1.9    8.5   0.5    2.6  2  DUF5472          Family of unknown function (DUF5472)
        1.2    9.8   8.0        7.5    7.3   0.4    3.4  3  NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.4      0.11   6.4e+02     156     177 ..      18      39 ..       5      49 .. 0.62
   2 !   74.6  14.8   1.3e-24   7.9e-21       6     179 ..     103     336 ..      98     340 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.11
  BPD_transp_1 156 ggvlalviavlllnlvadilqr 177
                   ++++a v+++l l l++ il++
    KIR65620.1  18 WLFVAPVVVILGLFLLLPILMA 39 
                   4455555555555555555554 PP

  == domain 2  score: 74.6 bits;  conditional E-value: 1.3e-24
  BPD_transp_1   6 ilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf.......................................................v 44 
                   + +a   +nr  +++ ++r+ +++++ + s+++ ++++++f                                                        
    KIR65620.1 103 LGLAlvvNNRMLRGRGFFRTAFYFPSVTSSVAISVVFLFLFansgavnallgmlgirgpqwfadsrgvlhlllgavgvdappaalaaggpfglswwD 199
                   333333669999**************************999****************************************************9999 PP

  BPD_transp_1  45 ilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtll 141
                   +ls+   ++ ++i+l+++++ ++++l++ aal+++p  l ea++++Ga+rwq+fr+v+lP+++p+++  l l ++g++  +  ++ + ++ +  t+l
    KIR65620.1 200 WLSGPSVAMVSIITLVVWTTSGTFMLMFLAALQNVPVALDEASTLDGAGRWQRFRHVTLPMIKPTTFLVLTLGLIGSWQVFDQVYVMSQGEPAKTTL 296
                   999999999**************************************************************************************** PP

  BPD_transp_1 142 leailgydyseis..nggvlalviavlllnlvadilqrll 179
                   + a+l+y +++    +g+ +a+ ++++l+++++ +lqr l
    KIR65620.1 297 TPAYLSYRTAFRDfdYGSGAAISFVLFLIIIALTLLQRRL 336
                   ***************9999999999999999999999876 PP

>> DUF5472  Family of unknown function (DUF5472)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.5   0.00032       1.9      14      32 ..      15      33 ..      10      37 .. 0.88
   2 ?    0.0   0.1      0.14   8.5e+02      13      30 ..     139     156 ..     130     160 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00032
     DUF5472 14 lflwlftafvvavlgllll 32
                l  wlf a vv +lgl+ll
  KIR65620.1 15 LAGWLFVAPVVVILGLFLL 33
                556*************997 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.14
     DUF5472  13 wlflwlftafvvavlgll 30 
                 +lfl+  +  v a+lg+l
  KIR65620.1 139 FLFLFANSGAVNALLGML 156
                 455555567899999988 PP

>> NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.5      0.23   1.4e+03      19      73 ..      83     146 ..      78     155 .. 0.50
   2 ?    7.3   0.4    0.0013       7.5      29      72 ..     185     233 ..     182     236 .. 0.70
   3 ?    4.8   0.0    0.0076        46      19      48 ..     306     335 ..     297     347 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.23
  NADH-u_ox-rdase  19 nfrpsDYvkaaai...ta.afplallaleklsPsvagka.mtlagligflgg.......fllayqns 73 
                      ++r + Y +a+++   ta a+ lal++ +++ +    ++ +++a +   +++       fl+ + ns
       KIR65620.1  83 SLRNNAYYVAIVVptqTAlALGLALVVNNRMLRG---RGfFRTAFYFPSVTSsvaisvvFLFLFANS 146
                      5666666666665221333334444444333322...225555555444443355555555555555 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0013
  NADH-u_ox-rdase  29 aaitaafplallalekls.Psvagka...mtlagligflg.gfllayqn 72 
                      aa++a+ p++l +++ ls Psva  +   +++ ++ g++   fl a+qn
       KIR65620.1 185 AALAAGGPFGLSWWDWLSgPSVAMVSiitLVVWTTSGTFMlMFLAALQN 233
                      68889************99999877755533444444444456666665 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0076
  NADH-u_ox-rdase  19 nfrpsDYvkaaaitaafplallaleklsPs 48 
                       fr  DY+  aai+++++l ++al  l+++
       KIR65620.1 306 AFRDFDYGSGAAISFVLFLIIIALTLLQRR 335
                      79999********99999888888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2395.93
//
Query:       KIR65621.1  [L=300]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-18   66.3  10.0    2.8e-18   66.3  10.0    2.2  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   2.1     0.099   1.8e+03      39      44 ..      45      75 ..      10     110 .. 0.45
   2 !   66.3  10.0   1.5e-22   2.8e-18       3     181 ..     113     291 ..     108     294 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.099
  BPD_transp_1 39 lvlvf.........................v 44
                  +++ f                          
    KIR65621.1 45 FLYPFviqignslktepdaaanplspipdpL 75
                  2222333334444444444444444444440 PP

  == domain 2  score: 66.3 bits;  conditional E-value: 1.5e-22
  BPD_transp_1   3 llGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifr 99 
                   l+G+ +a + +++++  l   + ++l++P +vl+i+ +l   +l+ lg +  ++ +++ l a +  ++i++++++s+p + +eaar++Ga+ +++f+
    KIR65621.1 113 LAGYALA-RLRFRGRAGLFAAVVAVLAVPGVVLLIPKFL---VLNQLGMYDSYAGLVVPLLADAAGVFIMKQFFESIPVSVEEAARIDGAGVFRTFW 205
                   5788888.9999********************9999663...68999************************************************** PP

  BPD_transp_1 100 kvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis....nggvlalviavlllnlvadilqrlldp 181
                    vvlP+a+p +it+ il+f g+++++ + +   ++p l tl          s++        + a+++a++++ +++ i+qr++ +
    KIR65621.1 206 SVVLPMAKPALITLTILSFQGSWNEFPHSLVAVQDPDLFTLPRGLADLVSGSLGKgtqyPLKLGAALLATIPVAVLFVIFQRYFVR 291
                   ************************************95444433333333332224446456666777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2240.41
//
Query:       KIR65622.1  [L=198]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-07   30.2   0.0    5.7e-07   29.8   0.0    1.2  1  Acetyltransf_1  Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
       0.11   12.9   0.0       0.18   12.2   0.0    1.4  1  Acetyltransf_7  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   6.4e-11   5.7e-07      16     113 ..      40     156 ..      22     160 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 6.4e-11
                     HHHHHHHHHHHH..HHSTTC...EEEE.EEETTE..EEEEEEEEEEET...........TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHH CS
  Acetyltransf_1  16 nedaseeefees..fsleae...gllv.aeedge..liGfisllkipd...........ekggvayieslaVspeyrgkGlGsaLlealeerare 91 
                     n d+++ ++++s    ++++   + lv +e  ++  l+Gf+   + +            +  gv+++ +l V p + ++G Gs+Ll a ++  r+
      KIR65622.1  40 NLDEEYLARRWSaaVQEPPSgahRVLVaVEQAEQsyLVGFAASGPADAeslapnepaeaLGSGVVAVTDLLVEPRWGRRGHGSRLLAASVDLWRS 134
                     455555555555432222334533344455555578*****777777777777777***999999999*************************** PP

                     TTESEEEEEEETTEHHHHHHHH CS
  Acetyltransf_1  92 egikkivlaveedndaairlYe 113
                      g+++ v++ ++ + a++++++
      KIR65622.1 135 DGFDRAVAWAFDADAATRKFLT 156
                     ***7766667777889999985 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     2e-05      0.18      15      48 ..      77     127 ..      60     159 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2e-05
                     EEEEEEEEES.................TCTEEEEE-GGGTTSSHHHHHHHH CS
  Acetyltransf_7  15 vGfialslld.................aeitrlaVdpeyrgkGiGraLlea 48 
                     vGf+a  + d                    t l V p + ++G G++Ll+a
      KIR65622.1  77 VGFAASGPADaeslapnepaealgsgvVAVTDLLVEPRWGRRGHGSRLLAA 127
                     4555555555555555555444333323334499***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1592.76
//
Query:       KIR65623.1  [L=183]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-12   47.5   0.0    2.4e-12   47.1   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    5.9e-07   29.8   0.0    1.1e-06   29.0   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.2e-06   29.3   0.2    1.4e-06   29.0   0.2    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    2.6e-05   24.1   0.0    4.4e-05   23.4   0.0    1.3  1  FR47             FR47-like protein
    0.00049   20.0   0.0    0.00064   19.7   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.13   12.4   0.1       0.32   11.2   0.1    1.6  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   8.1e-16   2.4e-12      31     116 ..      57     149 ..      31     150 .. 0.86

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 8.1e-16
                     TTC.EEEEEEETTEEEEEEEEEEEET......TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTT CS
  Acetyltransf_1  31 eae.gllvaeedgeliGfisllkipd......ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklG 116
                     e++ ++l+ae+dg +iGf ++ ++ +      ++   +++  ++V ++++g G + +Ll a+ +r+  +g ++  l+v  dn++a+r+Ye+ G
      KIR65623.1  57 EHPfTTLLAERDGAVIGFTTFGPYRNnqdradLDHTLGEVLTMYVERAHWGDGTAGRLLAAAKQRLAGRGWTAYRLWVLRDNRRARRFYERAG 149
                     23336666****************999*****9999*********************************9999999***************98 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   3.6e-10   1.1e-06       5      73 ..      62     149 ..      57     149 .. 0.74

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 3.6e-10
                     EEEEEETTEEEEEEEEEEES............TCTEE...EEE-GGGTTSSHHHHHHHHTT.....SE...EEEEEEEE..THHHHHHHHHHTT CS
  Acetyltransf_7   5 vfVaeddgkivGfialslld............aeitr...laVdpeyrgkGiGraLleaae.....kg...iileqlel..naekaikfYeklG 73 
                     +++ae+dg ++Gf  + ++             +   +   ++V  ++ g G + +Ll+aa+     +g   +   +l++  ++++a++fYe+ G
      KIR65623.1  62 TLLAERDGAVIGFTTFGPYRnnqdradldhtlG---EvltMYVERAHWGDGTAGRLLAAAKqrlagRGwtaY---RLWVlrDNRRARRFYERAG 149
                     577************999999999988764444...1566*****************973335655552222...3334444449*******88 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.2   4.8e-10   1.4e-06       2     137 ..       2     150 ..       1     151 [. 0.80

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 4.8e-10
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmr.y...lpe.pltleeaeewlera..waeeseeegygwaivlkdtgviGsvglrdleeedee.......ae 82 
                     L++rp +++D+ea++++   + ++  y   +p   l + +  +w +r+  + + ++e+ ++ ++ ++d+ viG+  + ++ +++++       +e
      KIR65623.1   2 LIIRPEEPDDAEAVARVHV-HGWQDgYagiMPAeVLARLNVAAWAQRRrdLGTADPEHPFTTLLAERDGAVIGFTTFGPYRNNQDRadldhtlGE 95 
                     899*********9986422.223332445444468888888999998877666677788888888899967************9999***99977 PP

  Acetyltransf_3  83 lgym.lapsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     +  m + +++wg G a   ++a+ + + +  g++  +  +  +N++ +r +e++G+
      KIR65623.1  96 VLTMyVERAHWGDGTAGRLLAAAKQRL-AGRGWTAYRLWVLRDNRRARRFYERAGL 150
                     765515688******************.6777**********************96 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.5e-08   4.4e-05      20      77 ..      92     150 ..      86     159 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.5e-08
                 TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EE.EEEETT-HHHHHHHHHHT- CS
        FR47  20 dggelgalqvlpehrrrGlgsrlvkalakeiaergktvl.lvvvasNtpsirlyeklGf 77 
                   ge+  ++v+  h + G ++rl +a  +++a rg t+  l+v  +N +++r+ye+ G 
  KIR65623.1  92 TLGEVLTMYVERAHWGDGTAGRLLAAAKQRLAGRGWTAYrLWVLRDNRRARRFYERAGL 150
                 569999*****************************9987366777999*******9885 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.1e-07   0.00064      31     111 ..      60     155 ..      26     159 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.1e-07
  Acetyltransf_10  31 alllvaeeggkivGviel...rdgs..........hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkav 109
                       ++l+ae++g ++G+ +    r+++          ++  ++V++++ g G + +Ll a+++++  +g    +l v  ++  a++fYe+ G  + 
       KIR65623.1  60 FTTLLAERDGAVIGFTTFgpyRNNQdradldhtlgEVLTMYVERAHWGDGTAGRLLAAAKQRLAGRGWTAyRLWVLRDNrRARRFYERAGLSPD 153
                      6788999999999999554223333888999988888899**********************999999999999988888*********98777 PP

  Acetyltransf_10 110 ge 111
                      ge
       KIR65623.1 154 GE 155
                      66 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00011      0.32       8      59 ..      68     128 ..      60     130 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
  Acetyltransf_CG   8 egeevafleYe..vrkegvldfthT.......eVpeelrGkGiAkkLvkaalddareeglk 59 
                      +g+ ++f ++   ++++++ d++hT       +V+ ++ G G A++L  aa +    +g++
       KIR65623.1  68 DGAVIGFTTFGpyRNNQDRADLDHTlgevltmYVERAHWGDGTAGRLLAAAKQRLAGRGWT 128
                      577888888744446666899999877666668******************9998888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1505.06
//
Query:       KIR65624.1  [L=409]
Description: cytoplasmic protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-78  264.6  32.9    1.8e-78  264.4  32.9    1.1  1  HTH_42    Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> HTH_42  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.4  32.9     1e-82   1.8e-78       1     328 []      40     380 ..      40     380 .. 0.96

  Alignments for each domain:
  == domain 1  score: 264.4 bits;  conditional E-value: 1e-82
      HTH_42   1 verlgavQadp....arahylvLwsRlggydpedlera..ladrqlveywamratlhlvpaedlpllrpamapalaaelarakgldareaaalaaavle 93 
                 ++r+g++Q d+     rahyl+L+sRlg y  + l++a  +++r+l+eyw+++a+  lvp   +++lr++ma+a+++++ +  +  a+e ++l+a v++
  KIR65624.1  40 LDRVGLIQVDSvnvlQRAHYLPLYSRLGPYPTTLLDAAayRRPRELFEYWGHEAS--LVPVGLHAALRWRMAKARDEAWGGM-RRIAQEQPELVAWVRD 135
                 689************************************999*************..********************95554.5667788889999*** PP

      HTH_42  94 rlaaegpltarelgealarr..gw.wgwkkpgkaskralellrlegelvvarrergfekvydlaervlPrav..rs...eaealreLvrrylrayGpat 184
                 ++aa+gplta+e++++ +r+  +w w+w+     +krale l+++ge++ a r+ +f ++ydl ervlP+a+  ++   +aea r+Lv  ++r++G+a 
  KIR65624.1 136 EVAARGPLTAAEIEHDAPREtgNWgWNWS----TVKRALEFLFWAGEVTAADRTPSFARRYDLPERVLPAAAldAPtptDAEAHRALVAIAARSLGVAA 230
                 ********************999999999....*************************************999822556******************** PP

      HTH_42 185 vadlaawsgltkarlraalaelvaegelvevrvergre.rlfdlpedlaelpgadtpvrlLppfDnlllgrarrerlfddfdyrkevytpaakrr.... 278
                 + +l+++++l++a +r+a+aelv++gel++v+ve g + +++ +++  a+lp+  +   l +pfD+l+++r r+erlf +f yr+e+y+pa +r+    
  KIR65624.1 231 EPELRDYFRLPVAGARRAVAELVEAGELTPVTVE-GWRhPAYLHAA--ARLPRWVRGNTLVSPFDPLVWERGRTERLF-GFAYRIEIYVPAPQRVhgyy 325
                 **********************************.77779******..9999988889********************.******************** PP

      HTH_42 279 vlpvLvdGrvvGrwdlkadretgvleveaflllea......eraaleaelerlarf 328
                 vlp+L ++r+ +r+dlkadr++gvl+v a +++e+      ++ al+ael+rla +
  KIR65624.1 326 VLPFLQGERFTARVDLKADRKAGVLLVPA-AWAEPgvdageTAVALAAELHRLAGW 380
                 *****************************.9********99999**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 3582.46
//
Query:       KIR65625.1  [L=188]
Description: hypothetical protein TK50_09655 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-17   61.0   6.1    8.1e-17   61.0   6.1    1.8  2  DUF2752   Protein of unknown function (DUF2752)
  ------ inclusion threshold ------
        4.1    6.3   6.9          5    6.0   6.9    1.2  1  DEC-1_N   DEC-1 protein, N-terminal region


Domain annotation for each model (and alignments):
>> DUF2752  Protein of unknown function (DUF2752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3      0.66   5.9e+03      13      24 ..      66      77 ..      62      78 .. 0.73
   2 !   61.0   6.1     9e-21   8.1e-17       1      48 [.      91     138 ..      91     139 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.66
     DUF2752 13 GCGltRavhall 24
                GC ++ +++all
  KIR65625.1 66 GCVGLGMAYALL 77
                777777777776 PP

  == domain 2  score: 61.0 bits;  conditional E-value: 9e-21
     DUF2752   1 CpfkaltGipCPGCGltRavhallhgdfaaAfrynplgvlllplllll 48 
                 C++k  tG++CPGCG+tRa++++lhgd+ aA+r + ++v++lp+l +l
  KIR65625.1  91 CLLKLTTGLDCPGCGGTRALWYVLHGDLPAAARHHFVFVFALPFLTYL 138
                 *********************************************997 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   6.9   0.00056         5     124     160 ..      11      47 ..       3      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00056
     DEC-1_N 124 aapppapapvpddpapapaapqaaafaffnpanldas 160
                 aap p p p ++ papap   +++a+ + +p  l   
  KIR65625.1  11 AAPHPHPHPDAQAPAPAPGEWPPGAYPVAEPDRLTRL 47 
                 67779999999999****9999****99999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1402.80
//
Query:       KIR65626.1  [L=307]
Description: dihydrodipicolinate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-81  272.5   0.0    2.9e-81  272.4   0.0    1.0  1  DHDPS         Dihydrodipicolinate synthetase family
  ------ inclusion threshold ------
      0.015   15.0   0.8        3.7    7.1   0.0    2.9  3  Peripla_BP_6  Periplasmic binding protein
      0.016   15.0   0.0      0.019   14.7   0.0    1.2  1  Amidohydro_2  Amidohydrolase


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.4   0.0   4.9e-85   2.9e-81       2     286 ..      17     299 ..      16     302 .. 0.96

  Alignments for each domain:
  == domain 1  score: 272.4 bits;  conditional E-value: 4.9e-85
                 -SEEEEE----B-TTSSB-HHHHHHHHHHHHH.CT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHTTSSEEEEE---SSHHHHHHHHHCCCCCT-SE CS
       DHDPS   2 fsgiitalvtpfdedgkldkealrklieflin.kgvdglvvaGttGEsatlsteekeqlveiaveaakgripviagvGsnstseaiklakkaeeaGadg 99 
                 f++++ta+vtpf  dg ld   + +l+++l++ +g d+lv  GttGEs+t   +eke l++ +vea+++r  v+agvG n t+  i+la++ae+aGa+g
  KIR65626.1  17 FGRVLTAMVTPFTSDGSLDLDGAVRLANHLVDeQGNDALVLNGTTGESPTTTDAEKERLIRAVVEAIGDRARVVAGVGTNDTRHTIELAASAEKAGAHG 115
                 789****************************8368**************************************************************** PP

                 EEEE---SS---HHHHHHHHHHHHHCHSS-EEEEE-HHHHSHHHHHHHHHHHHTSTTEEEEEE-SS-CTHHHHHHCCCSTTSEEEES-GGGHHHHHHTT CS
       DHDPS 100 vlavtPYYnkpsqeglyqhfkaiieatdlpvilYnvpsrtgadlspetvkrLaelenivgvKeavgdleevikikkevgkdlviysGddelllsalslG 198
                 +l+vtPYYnkp q gl  hf a++ at+lp++lY++p r+g+ ++ et+ rLae + iv+vK+a gdl++    + + + dl+ ysG d l+l+al +G
  KIR65626.1 116 LLVVTPYYNKPPQSGLVRHFTAVADATGLPIMLYDIPHRSGVPIETETLVRLAEHDRIVAVKDAKGDLTAT-SWVTS-RTDLAFYSGEDSLVLPALAVG 212
                 ********************************************************************554.44444.699****************** PP

                 -SEEEESCHHCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCCCCSCCHHHHHHHHCTTSSSBB.--TTS--S-HHHHHHHHHHH CS
       DHDPS 199 adGvisvtsniagermrqlikalkeGdlaeaaelnekllplikilfaepnvilvktalellGlvveatlrkPltpleeeekeeleall 286
                   Gv++ + ++ g + + +i+a+ +Gd  +a +l+++llpl+  +f ++  ilvk++l+ lGl++++ +r+Pl+ ++ +e  +l+a+ 
  KIR65626.1 213 CVGVVGTSTHFTGALTQRMIEAYDAGDPGTALALHRRLLPLFTGVFRTQGTILVKAGLAALGLPAGP-VRPPLVDATPDEIAQLRADC 299
                 *******************************************************************.*********99999998765 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00061       3.7      43      81 ..      25      63 ..      17      76 .. 0.80
   2 ?    4.5   0.1    0.0038        23     214     266 ..      84     136 ..      66     150 .. 0.59
   3 ?   -0.1   0.0     0.095   5.7e+02     222     267 ..     195     237 ..     183     248 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00061
                  EEEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHH CS
  Peripla_BP_6 43 ielverDdaydpdraaeaarrlvdqdgvdalvgplssav 81
                  ++  + D   d d+a++ a++lvd++g dalv + +++ 
    KIR65626.1 25 VTPFTSDGSLDLDGAVRLANHLVDEQGNDALVLNGTTGE 63
                  6777889999********************998877765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0038
                   T-SSSCEEEECCC...-CHHHHHHHHHHHHTTEEEEESCSTCCCSHHHHHHHHHHH CS
  Peripla_BP_6 214 Gldakrillvsws...gseedlkalggeaaegvlavtpyfpdldnpavrafvaaye 266
                   G +a+ +++v++     + e ++++++++a g+l+vtpy++ +    +  +v++++
    KIR65626.1  84 GDRARVVAGVGTNdtrHTIELAASAEKAGAHGLLVVTPYYNKP---PQSGLVRHFT 136
                   5555555555555332333444455556688999999888653...3333444443 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.095
                   EECCC-CHHHHHHHHHHHHTTEEEEESCSTCCCSHHHHHHHHHHHH CS
  Peripla_BP_6 222 lvswsgseedlkalggeaaegvlavtpyfpdldnpavrafvaayea 267
                   l+ +sg ++ + ++ + ++ gv++++++f++   + ++++ +ay a
    KIR65626.1 195 LAFYSGEDSLVLPALAVGCVGVVGTSTHFTG---ALTQRMIEAYDA 237
                   5567788888888888889999999999965...567777777755 PP

>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.2e-06     0.019      65     148 ..      67     149 ..      39     225 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.2e-06
                   HHHHHHHHHHHHHHHHCTTCBECEEECTSSHCHHHHHHHHHHHHTTECEEEEESSTTTCCTTTCGGHHHHHHHHHHHT-EEEEE CS
  Amidohydro_2  65 lcrgannrvlaeaakrpdrfvggaavvpldpedaaaeleraveelgfkGvrlnphvggddllgdrldrpifealeelglpvdih 148
                   ++ ++ +r++  + ++ +++++ +a v  ++ + + el  ++e++g+ G+ + + + ++++ +     ++ +++ ++glp++++
    KIR65626.1  67 TTDAEKERLIRAVVEAIGDRARVVAGVGTNDTRHTIELAASAEKAGAHGLLVVTPYYNKPPQSGLVR-HFTAVADATGLPIMLY 149
                   4555666666666666666666666677777*****************************9998877.**************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2439.57
//
Query:       KIR65627.1  [L=562]
Description: ribonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-13   50.4   0.0    6.1e-13   49.6   0.0    1.4  1  RNase_J_C      Ribonuclease J C-terminal domain
    1.3e-12   47.4   0.3    4.9e-11   42.4   0.0    2.5  2  RMMBL          Zn-dependent metallo-hydrolase RNA specificity
    6.7e-10   38.8   0.7    1.4e-09   37.8   0.1    1.8  2  Lactamase_B_2  Beta-lactamase superfamily domain
    5.7e-09   36.3   2.2    5.7e-09   36.3   2.2    2.6  2  Lactamase_B    Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> RNase_J_C  Ribonuclease J C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   1.4e-16   6.1e-13       1      73 []     493     562 .]     493     562 .] 0.98

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 1.4e-16
   RNase_J_C   1 gPeivsRGfvyvkeseeLieeakkvvretieealeekesdwnelkrkirealkkflykktkrrPmIlPviveV 73 
                 gP +  +Gf    e+ e ++ +  +v+e++++a  ++++d ++l++ +r+++++++++k++rrPmI+P +veV
  KIR65627.1 493 GPTVSAKGFS---EDPEAFNPVVPLVTEALNRAAADGITDPHQLQQIVRRTVGRWVNDKYRRRPMIVPTVVEV 562
                 899******6...9**********************************************************9 PP

>> RMMBL  Zn-dependent metallo-hydrolase RNA specificity domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.033   1.5e+02      34      46 ..      80      92 ..      70     100 .. 0.82
   2 !   42.4   0.0   1.1e-14   4.9e-11       7      56 ..     369     417 ..     362     423 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.033
       RMMBL 34 vilvHGeeeatsa 46
                ++l HG+e+++ a
  KIR65627.1 80 IVLTHGHEDHIGA 92
                9********9976 PP

  == domain 2  score: 42.4 bits;  conditional E-value: 1.1e-14
       RMMBL   7 rieeidfSgHadknellelirklkprnvilvHGeeeatsalarllkeeeg 56 
                  ++++++SgHa   ell l++ ++p n+++vHGe+++++a+arl   e+g
  KIR65627.1 369 DVAKVHVSGHAPAGELLYLLNVTRPSNLMPVHGEWRHLRAHARLG-IESG 417
                 3999***************************************98.6665 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.1     3e-13   1.4e-09      23     145 ..      69     176 ..      44     213 .. 0.77
   2 ?   -2.1   0.1      0.53   2.4e+03     175     200 ..     375     400 ..     354     400 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 3e-13
                    SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-TTSEEEECSTTEEEEEEEE-EE--CTC CS
  Lactamase_B_2  23 elrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleeepavnvheldwgesfelgdggleitatparhksgrrl 118
                    + +d+l++++a++lth+H DH+  ++ l + +p ++pl++++ +la +ea++     ++     + ++  g++ +lg+  +e+++++++h+ +   
     KIR65627.1  69 PILDRLADVQAIVLTHGHEDHIGAVPYLLAHKP-DIPLVGSQFTLALVEAKLAERRIQPY----TLTVREGGRERLGP--FECEFFAVNHSIPD-- 155
                    3679999***********************666.6****************766665555....55666799999996..78***********9.. PP

                    CE-TTTSEEEEEECTTEEEEEESS-S- CS
  Lactamase_B_2 119 drnagdtlGlriegggkrvyyigDtgy 145
                          +l+++i+++   v+++gD + 
     KIR65627.1 156 ------ALAVAIRTPAGLVLHTGDFKM 176
                    ......9******99*********984 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.53
                    HHT---STSHHHHCTTSSSSEEEEES CS
  Lactamase_B_2 175 hmgHltpeeaveaaadlgakrlvliH 200
                      gH++ +e + +++ ++++ l+++H
     KIR65627.1 375 VSGHAPAGELLYLLNVTRPSNLMPVH 400
                    57999999999*********999999 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   2.2   1.3e-12   5.7e-09       3      75 ..      29     107 ..      27     185 .. 0.79
   2 ?   -0.5   0.3      0.24   1.1e+03     117     153 ..     428     462 ..     359     483 .. 0.46

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.3e-12
                  CCSSEEEEEEETTCEEEES--SCHHHHHHHH......HHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCC CS
  Lactamase_B   3 pdpvnsyliegdggviLiDtGtsteaaraal......elaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgav 75 
                    + n+++ e dg+++++D+G+  +   +        +   +   + dv a++lTH+H DHiG++++l  + +  + + 
   KIR65627.1  29 AIGRNMTVFEYDGKLLIVDCGVLFPDVEQPGvdlilpDFGPILDRLADVQAIVLTHGHEDHIGAVPYLLAHKPDIPLVG 107
                  5678*****************9999999988999999999999************************998877665555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.24
                  CCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTS CS
  Lactamase_B 117 aggrralyvtggpghghghgvveygggkvlftGDall 153
                  +g++++l+     + g  h+  +y   + l +GD++ 
   KIR65627.1 428 DGDVVDLVEGRASLVG--HVKSRYVYVDGLAVGDVSE 462
                  3333333333333333..3333344444466666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3794.81
//
Query:       KIR65628.1  [L=402]
Description: serine protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-16   60.3   1.7    1.4e-16   60.3   1.7    2.4  2  Pro_Al_protease  Alpha-lytic protease prodomain
    1.1e-10   41.8   7.4    2.9e-10   40.4   7.4    1.7  1  Trypsin          Trypsin


Domain annotation for each model (and alignments):
>> Pro_Al_protease  Alpha-lytic protease prodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   1.0       0.5   4.5e+03      37      57 ..     105     122 ..     103     124 .. 0.52
   2 !   60.3   1.7   1.5e-20   1.4e-16       2      58 ..     130     186 ..     129     187 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.5
  Pro_Al_protease  37 VVtadsgvtaaaealaaaAgv 57 
                      +V ++  ++++ ++ ++aAg+
       KIR65628.1 105 TVAVA--DPGR-ADAVRAAGA 122
                      45555..5555.444566664 PP

  == domain 2  score: 60.3 bits;  conditional E-value: 1.5e-20
  Pro_Al_protease   2 SlaeLdaakaaLdraaaraaaavtaWyVDvatNkVVVtadsgvtaaaealaaaAgvd 58 
                      ++ eLd  k++Ldr+ +++++avt+WyVD +tN+VVV a +g++aa +++aaa+g++
       KIR65628.1 130 GVGELDTMKTRLDRSGGAVGRAVTGWYVDAPTNSVVVVARAGQEAAGRRFAAASGLP 186
                      5689***************************************************97 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   7.4   3.2e-14   2.9e-10      37     218 ..     229     379 ..     210     381 .. 0.78

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 3.2e-14
                 EEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCS...TTHTT.STTTEEEEEESSBSS CS
     Trypsin  37 vlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpa...asssl.pvgttclvsGwgrtk 131
                  +TA+HC +         g++ ++  +g     + + v+ ++ + p++   D+++++++ ++++++ v+ ++  a   ++s+  pvg++++ sG ++ +
  KIR65628.1 229 FVTAGHCGQA--------GDR-TTGVDG-----SPQGVFAASSF-PRD---DWGVVRVTGDFQPQPVVNDFNGGAvpvNGSQEaPVGASICRSGSTTGA 309
                 5899999996........442.222233.....33344443344.444...9****************9999999998444444*************** PP

                 TSSBSSBEEEEEEEEEEHH.HHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEE.SSSSCTTSEEEEEEGGGGH CS
     Trypsin 132 ekgksdtlqevevpvvsre.tcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswg.kgcakgnrpgvytkvssyl 218
                  +g   ++q  + +v   e t++      +t++ +ca+          GDSGG+ + +d+ ++G++s+g  +c+ g+  +++++v+++l
  KIR65628.1 310 FCG---VIQAKNATVNYPEgTVTG-----LTQTNVCAEP---------GDSGGSWISGDQ-AQGVTSGGaGDCTVGGV-TFFQPVNEIL 379
                 ***...777777666555548888.....9*********.........************.********999999986.******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3225.74
//
Query:       KIR65629.1  [L=568]
Description: hypothetical protein TK50_09680 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-13   50.2   0.2    4.3e-13   49.4   0.2    1.4  1  YbjN      Putative bacterial sensory transduction regulator


Domain annotation for each model (and alignments):
>> YbjN  Putative bacterial sensory transduction regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.2   2.4e-17   4.3e-13      19     125 ..     447     564 ..     437     566 .. 0.79

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 2.4e-17
                 EEETTEE.......EEEEEETTEEEEEEE--SSTT-EEEEEEEEES-.-TTHHHHHHHHHHHTTTTTTT-EEEEETTEEE....EEEEEE-.TT--HHH CS
        YbjN  19 tedddga......ivvvgtwggyrftiallgeseelllvlafvarvp.eedreallellnrwNrellfgkayldedgdvl....vehdldldagltpeq 106
                   d+ g+      + vvg+wg + + ++  ge +e+l+ +   +r   + +r+++++++n wN+++l++kay+++dg +      + + dl++g+ p q
  KIR65629.1 447 ALDRRGDawtmrgPAVVGRWGPAVIEFRQAGERGEILHARVLAVRRLaAGRRAEAYAFCNAWNHDRLLPKAYAHDDGSGElvlaGDVTTDLAHGVAPTQ 545
                 445555556666778999**99999999999999998855444444459************************888877766555555566******** PP

                 HHHHHHHHHHHHHHHHHHH CS
        YbjN 107 ldrllalvleaadqffdal 125
                 ld l+++++++   +++a+
  KIR65629.1 546 LDVLVTAAVATGVAYAEAV 564
                 *********9999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4175.46
//
Query:       KIR65630.1  [L=159]
Description: hypothetical protein TK50_09685 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-24   86.3   0.1      2e-24   86.1   0.1    1.0  1  YbjN      Putative bacterial sensory transduction regulator


Domain annotation for each model (and alignments):
>> YbjN  Putative bacterial sensory transduction regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.1   1.1e-28     2e-24       1     125 [.      25     150 ..      25     152 .. 0.92

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 1.1e-28
                 HHHHHHHHHHHH--S-EEEEETTEE.EEEEEETTEEEEEEE--SSTT-EEEEEEEEES-.-TTHHHHHHHHHHHTTTTTTT-EEEEETTEEE....EEE CS
        YbjN   1 sldlleevLeeagleyertedddgaivvvgtwggyrftiallgeseelllvlafvarvp.eedreallellnrwNrellfgkayldedgdvl....veh 94 
                 +++l+++vL+++g++  +  d++g+  + g+w+++++++  +g ++e+l+v+++ a     e  + l++++n wN++++++ka+++ d+d++     e 
  KIR65630.1  25 TDELIAAVLRRRGYA--VAADPAGR--LLGRWDDALVWFLRMGAGGEILQVRTIAAPTFpIEYVPTLHAFCNSWNHDRYWPKAFVHVDDDGRalvcGEV 119
                 589************..********..***********************99999986669************************99999999966666 PP

                 EEE-.TT--HHHHHHHHHHHHHHHHHHHHHH CS
        YbjN  95 dldldagltpeqldrllalvleaadqffdal 125
                   dl+ g+tp qld+ll++++++  q+++a+
  KIR65630.1 120 IADLERGVTPHQLDQLLDCGISTGCQLAAAV 150
                 6666*******************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1190.65
//
Query:       KIR65631.1  [L=822]
Description: cell division protein FtsK [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-58  197.7   0.5    1.7e-56  191.3   0.5    2.2  1  FtsK_SpoIIIE   FtsK/SpoIIIE family
    2.5e-26   91.8   0.0    4.7e-26   90.9   0.0    1.5  1  FtsK_alpha     FtsK alpha domain
    3.5e-23   81.2   0.0    7.2e-23   80.2   0.0    1.6  1  FtsK_gamma     Ftsk gamma domain
    2.8e-15   56.5   3.3    2.8e-15   56.5   3.3    1.8  2  FtsK_4TM       4TM region of DNA translocase FtsK/SpoIIIE
    0.00045   19.2   0.0     0.0048   15.9   0.0    2.0  2  AAA_10         AAA-like domain
     0.0014   17.6   0.0     0.0041   16.1   0.0    1.6  2  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
     0.0015   18.7   0.0     0.0029   17.8   0.0    1.4  1  DUF87          Helicase HerA, central domain
      0.009   15.1   0.0      0.014   14.5   0.0    1.2  1  T2SSE          Type II/IV secretion system protein
  ------ inclusion threshold ------
      0.026   14.6   0.0       0.39   10.8   0.0    2.3  2  MMR_HSR1       50S ribosome-binding GTPase
      0.028   14.7   0.0      0.059   13.6   0.0    1.5  1  AAA_22         AAA domain
      0.045   12.9   0.0       0.07   12.3   0.0    1.2  1  DUF815         Protein of unknown function (DUF815)
      0.077   11.6   0.1        3.9    5.9   0.0    2.1  2  DUF853         Bacterial protein of unknown function (DUF853)
       0.12   11.1   0.0       0.17   10.6   0.0    1.1  1  Adeno_IVa2     Adenovirus IVa2 protein
       0.13   11.6   0.0        3.4    7.0   0.0    2.2  2  TniB           Bacterial TniB protein
       0.15   11.9   0.0       0.29   11.0   0.0    1.4  1  RsgA_GTPase    RsgA GTPase
        9.1    6.3   6.5         19    5.2   2.8    2.4  2  DUF3377        Domain of unknown function (DUF3377)


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.3   0.5   1.5e-59   1.7e-56       2     243 .]     443     643 ..     442     643 .. 0.96

  Alignments for each domain:
  == domain 1  score: 191.3 bits;  conditional E-value: 1.5e-59
                   HHHHHTSHHHHT---TTEEEEEEETTS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSSCGGGTT-TTBSS.S- CS
  FtsK_SpoIIIE   2 LlevleskkfrtessqlpvalgkeisgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgvelsalediphllsvav 98 
                   L +vl+s+ +  +++++ valgk+i g  +v++l+km+ h+l+aGatg GKS +ln+L++S++t++tP+eV+l+liD+k ve++ +e+iphl++ ++
    KIR65631.1 443 LGDVLRSRAATSDHHPMVVALGKDIEGGFVVANLAKMP-HILIAGATGAGKSSCLNSLLVSILTRATPDEVRLLLIDPKRVEMTGYEGIPHLVT-PI 537
                   568899999*****************************.*******************************************************.** PP

                   B-SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTT---B-TT-......................-----------B-----EEE CS
  FtsK_SpoIIIE  99 atdperalraleeLvkemeeryalfreagvrsiaaydgeiaedpldifgdvflvlDnyddlaaeneritsLsnqgpsygvhvlvtagrelekrpslv 195
                   +t++++a+  le++v em+ ry  +++ gvr+i++++ ++ + + ++                                      ++re ++ p+l+
    KIR65631.1 538 VTNAKKAADSLEWVVREMDMRYDDLAANGVRHIDDFNRKVRTGEIKAP-----------------------------------PGSEREMRPYPYLL 599
                   ****************************************99887754...................................35789999****** PP

                   EEEC-HHHHHHHHHHH....HHHHHHHHHHHCGGGTEEEEEEES---T CS
  FtsK_SpoIIIE 196 vivderieLrlaapkdssvlvedaivRlarkgraaglHlllatqrlsv 243
                   vivde+++L+++ap+d    ved +vR+++ +raag+Hl+latqr+sv
    KIR65631.1 600 VIVDELADLMMVAPRD----VEDSVVRITQLARAAGIHLVLATQRPSV 643
                   ****************....**************************96 PP

>> FtsK_alpha  FtsK alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.0   4.2e-29   4.7e-26       1     101 []     337     435 ..     337     435 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 4.2e-29
  FtsK_alpha   1 LPsldlLeeeekekkkedeeelekkaklieetleefgieakvveisvGPvvtqyevepapgvkvskiaaleddlalaLaaksirieapipGksvvGiev 99 
                 LP+ +lL+   +   k+++++ ++ +  ++ ++++fg++a+v+++++GP+vt+yeve+ pgvkv++i++l++++a a++  ++ri +pipGks+vG+e+
  KIR65631.1 337 LPPANLLSGGAAP--KTRSKANDEVIAALTGVFDQFGVDAEVTGFTRGPTVTRYEVELGPGVKVERITQLSRNIAYAVKSPDVRILSPIPGKSAVGVEI 433
                 8********9999..7888888999************************************************************************** PP

  FtsK_alpha 100 Pn 101
                 Pn
  KIR65631.1 434 PN 435
                 *9 PP

>> FtsK_gamma  Ftsk gamma domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   6.4e-26   7.2e-23       5      62 ..     748     805 ..     744     806 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 6.4e-26
  FtsK_gamma   5 elfeeavelvveegkaStSllQRrlriGYnRAarlidqLeeeGiVgpaegskpReVli 62 
                 +l+ +avelvv+++  StS+lQR+lr+G+++A+rl+d +e +G+Vgp+egsk+R+Vl+
  KIR65631.1 748 DLLVQAVELVVTSQFGSTSMLQRKLRVGFAKAGRLMDLMETRGVVGPSEGSKARDVLV 805
                 6899*****************************************************8 PP

>> FtsK_4TM  4TM region of DNA translocase FtsK/SpoIIIE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2         1   1.1e+03      66     112 ..      56     107 ..      54     111 .. 0.42
   2 !   56.5   3.3   2.5e-18   2.8e-15      47     171 .]     111     236 ..     109     236 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1
    FtsK_4TM  66 awllvvlll.awglrllrrkslerr....llrllgalllllasaalfalrla 112
                 a+++ ++ +  w++r + r+  ++r     +r  ga llll ++ l a+ l+
  KIR65631.1  56 AVWMGLAHGvGWAVRAAGRQAASARdldpEHRRDGAGLLLLGLSLLSAVALW 107
                 4555554441444444444433322333344444444444444444444443 PP

  == domain 2  score: 56.5 bits;  conditional E-value: 2.5e-18
    FtsK_4TM  47 gGrvGAwladlllslfGlsawllvvlllawglrllrr.kslerrllrllgalllllasaalfalrlasledelpggaGGvlGrllaaalstllgftGat 144
                 +G vGA+lad++  ++G  +++++vll + ++rl+r  +++e+r + l+g   +l+a aa+ ++  ++++  ++ +aGG++G  ++++l t++ +  a+
  KIR65631.1 111 AGPVGARLADTVRLFLGAISIVVPVLLSIGAWRLMRTpSDPEHRGRGLVGWGSMLVATAAMLHIGQNPVDPVQRDYAGGLIGAGVGNVLETAVTAWVAV 209
                 699**********************************55788999999*********************9999************************** PP

    FtsK_4TM 145 llllvllliglslvlgfswlelaerlg 171
                  lll+ll++gl++v+ + + ++ erlg
  KIR65631.1 210 PLLLLLLVFGLLVVTATPINKIPERLG 236
                 ***************999999888875 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.3e-06    0.0048      21      70 ..     479     532 ..     472     552 .. 0.83
   2 ?    1.0   0.0      0.14   1.6e+02     261     312 ..     616     671 ..     599     679 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.3e-06
      AAA_10  21 asasliiGdlGnGKSvlakllvlyisllg....gkaliiDpkkerekfketlpe 70 
                  ++ li G +G+GKS + + l + i+ +      ++l+iDpk+ +   +e +p+
  KIR65631.1 479 MPHILIAGATGAGKSSCLNSLLVSILTRAtpdeVRLLLIDPKRVEMTGYEGIPH 532
                 6899************999999888887778889********987766666665 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.14
      AAA_10 261 llkelvRiG...Rsynaavylvtqsad.DvlkeelknniglklaFretdkeeikkv 312
                 +++++vRi    R+    ++l+tq ++ Dv    +k n++ +laF     ++ + +
  KIR65631.1 616 VEDSVVRITqlaRAAGIHLVLATQRPSvDVVTGLIKANVPSRLAFATSSLADSRVI 671
                 66666676544478888899****9765*****************97766665555 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.7e-06    0.0041      16      51 ..     480     519 ..     472     531 .. 0.83
   2 ?   -2.1   0.0       1.2   1.4e+03     247     281 ..     600     640 ..     591     643 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.7e-06
  TrwB_AAD_bind  16 qhilivGttGsGKtqalekllrairarg....draivlDl 51 
                     hili+G+tG+GK+ +l++ll +i  r+     r + +D+
     KIR65631.1 480 PHILIAGATGAGKSSCLNSLLVSILTRAtpdeVRLLLIDP 519
                    6**********************99998555456666665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
  TrwB_AAD_bind 247 fflDElpaLgrl......eelksllaegRkfGgavvlglqs 281
                    +++DEl++L  +      +++ ++ + +R  G+ +vl+ q 
     KIR65631.1 600 VIVDELADLMMVaprdveDSVVRITQLARAAGIHLVLATQR 640
                    68899999988844333346777888999999999999996 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.6e-06    0.0029      24      60 ..     480     519 ..     468     562 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.6e-06
       DUF87  24 rHlAilgsTGsGKSntvavLleelle...kkgatililDp 60 
                  H++i g TG+GKS    +Ll ++l     + +++l++Dp
  KIR65631.1 480 PHILIAGATGAGKSSCLNSLLVSILTratPDEVRLLLIDP 519
                 6************************98877788******9 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.2e-05     0.014     126     169 ..     476     522 ..     428     554 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.2e-05
       T2SSE 126 vrerglilvsGgTgsGKttllyallkeinks....derivtvEDpvEi 169
                 +++   il++G+Tg GK+  l++ll  i ++    + r++++ Dp  +
  KIR65631.1 476 LAKMPHILIAGATGAGKSSCLNSLLVSILTRatpdEVRLLLI-DPKRV 522
                 456678*****************9988877655544555555.55555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00035      0.39       2      22 ..     482     502 ..     481     526 .. 0.86
   2 ?    1.0   0.0      0.39   4.3e+02      48      96 ..     669     742 ..     637     759 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 ++i+G + +GKS+ +n+l+ +
  KIR65631.1 482 ILIAGATGAGKSSCLNSLLVS 502
                 89***************9865 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.39
                 EEEEECGGC...........SS.HHHHHHHHHHHHHHHHC.TSEEEEEEETT............TTCSHHHHHH CS
    MMR_HSR1  48 ielvDtpGl...........ie.gaseekglgkaflalee.adlillvvdas............eeklkpldee 96 
                  +++D pG            +  gas+  +++ a+   +e ad++ ++ d +            +++ k++dee
  KIR65631.1 669 RVILDQPGAekllgrgdglfLPmGASKPIRIQGAWVTEREiADVVKFCKDQRepefrpdvlapaQDNKKKIDEE 742
                 578999994444444444432258999999999999999988*****999666665555544443333444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.3e-05     0.059       7     130 ..     481     639 ..     477     644 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.3e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee.................erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalra 88 
                 ++++ G +G+GK+ +l+ ll +   +a ++e                   p++v+  +++ ++ +d l++++r+++ + ++  ++  + ++ +++ +r+
  KIR65631.1 481 HILIAGATGAGKSSCLNSLLVSILTRATPDEvrlllidpkrvemtgyeGIPHLVTPIVTNAKKAADSLEWVVREMDMRYDDLAANGVRHIDDFNRKVRT 579
                 799********************9999999999999988777776664444445666666668899999999999998888444444444444444444 PP

      AAA_22  89 rav..............ielliiDEaqhlr...s...eealeeLrsllnlsrkgvqliLvGt 130
                                    l+i+DE   l+   +   e+ +  + +l+     g++l+L+ +
  KIR65631.1 580 GEIkappgseremrpypYLLVIVDELADLMmvaPrdvEDSVVRITQLAR--AAGIHLVLATQ 639
                 4446666677777888889999999999876752244555555555555..88888888755 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.2e-05      0.07      53      93 ..     479     523 ..     470     543 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.2e-05
      DUF815  53 annvLLwGarGtGKSslvkallneyaeeg....Lrlievekedlk 93 
                   ++L+ Ga G+GKSs++ +ll ++ ++     +rl+ ++ ++++
  KIR65631.1 479 MPHILIAGATGAGKSSCLNSLLVSILTRAtpdeVRLLLIDPKRVE 523
                 469***************999888776666667666666655554 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0035       3.9      22      42 ..     480     500 ..     465     518 .. 0.84
   2 ?    3.3   0.0     0.022        24     257     303 ..     596     642 ..     589     661 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0035
      DUF853  22 rhGliaGatGtGktvtLqvla 42 
                  h liaGatG+Gk   L+ l 
  KIR65631.1 480 PHILIAGATGAGKSSCLNSLL 500
                 599************999875 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.022
      DUF853 257 PklvfffdeahLLfndapkallekveqvvrLirskGvGvyfvtqnPl 303
                 P l +  de   L+  ap+ + + v ++ +L r+ G+ + + tq P+
  KIR65631.1 596 PYLLVIVDELADLMMVAPRDVEDSVVRITQLARAAGIHLVLATQRPS 642
                 7888999999999999*****************************96 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00015      0.17      78     126 ..     471     520 ..     449     571 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
  Adeno_IVa2  78 lsslnyglqPviGviyGPtGsGksqllrnlissklisPiPetv..ifitPe 126
                     n+ + P i +i G tG+Gks  l +l+ s l   +P+ v  ++i P+
  KIR65631.1 471 FVVANLAKMPHI-LIAGATGAGKSSCLNSLLVSILTRATPDEVrlLLIDPK 520
                 556688889988.799************************98744567776 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.003       3.4      29      54 ..     473     498 ..     456     528 .. 0.82
   2 ?    2.0   0.0      0.11   1.2e+02     121     168 ..     598     645 ..     587     648 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.003
        TniB  29 ypkrkrmpnlllvGdsnnGKtmivek 54 
                 +++  +mp++l++G +  GK++ +++
  KIR65631.1 473 VANLAKMPHILIAGATGAGKSSCLNS 498
                 566689***************98876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.11
        TniB 121 rvLiiDEihnllagsarkqreflnalksLgnelkipivlvGteealra 168
                  ++i+DE+ +l+    r+ +  +  + +L +   i +vl+  +  +++
  KIR65631.1 598 LLVIVDELADLMMVAPRDVEDSVVRITQLARAAGIHLVLATQRPSVDV 645
                 57899*********************************9877776666 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00026      0.29      97     122 ..     476     502 ..     448     513 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00026
                  CTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  97 lkd.ktsvlvGqSGvGKStLinallpe 122
                  l++   ++++G +G+GKS+ +n+ll +
   KIR65631.1 476 LAKmPHILIAGATGAGKSSCLNSLLVS 502
                  444367899**************9765 PP

>> DUF3377  Domain of unknown function (DUF3377)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1       0.2   2.2e+02      27      40 ..     126     139 ..     114     142 .. 0.80
   2 ?    5.2   2.8     0.017        19      29      48 ..     204     223 ..     195     227 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.2
     DUF3377  27 vnaiaVvvPlvLll 40 
                  +ai +vvP++L++
  KIR65631.1 126 LGAISIVVPVLLSI 139
                 689********985 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.017
     DUF3377  29 aiaVvvPlvLllciLvliya 48 
                  + V vPl+Lll++ +l+++
  KIR65631.1 204 TAWVAVPLLLLLLVFGLLVV 223
                 5789************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (822 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.42
# Mc/sec: 5821.60
//
Query:       KIR65632.1  [L=81]
Description: hypothetical protein TK50_09695 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.068   13.0   8.2       0.11   12.4   8.2    1.4  1  Rick_17kDa_Anti  Glycine zipper 2TM domain
       0.27   11.6   3.1        0.4   11.1   3.1    1.4  1  CPBP             CPBP intramembrane metalloprotease
        2.5    8.0   8.4        3.1    7.7   8.4    1.2  1  RseC_MucC        Positive regulator of sigma(E), RseC/MucC
        3.8    7.3  11.2        4.4    7.1  11.2    1.1  1  VIT1             VIT family
          4    7.8   9.3        1.2    9.5   4.3    2.1  2  Phage_holin_5_2  Phage holin family Hol44, in holin superfami
        9.8    6.7   7.1         30    5.1   7.1    1.7  1  DUF4231          Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   8.2   3.7e-05      0.11       7      38 ..      41      75 ..      36      78 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.7e-05
  Rick_17kDa_Anti  7 AaaGgvaGaaigg...gggrvlGavvGAaaGavaG 38
                     +++ gv+Ga +g+   g+ ++++ v+GA++G ++ 
       KIR65632.1 41 GVILGVVGAVLGDkplGWYAAAASVAGAVLGMILS 75
                     67889999999666999**************9886 PP

>> CPBP  CPBP intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.1   0.00013       0.4      38      73 ..      27      74 ..       6      79 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
                HHHHHHHHHHHHHCSGGG............HHHHHHHHHHHHHHHHHH CS
        CPBP 38 tlailissilFglaHlpn............gpsvllaalaGlvlgyly 73
                +la+++s ++Fgl+ ++             g++ ++a++aG vlg++ 
  KIR65632.1 27 ALAVFVSPVIFGLLGVILgvvgavlgdkplGWYAAAASVAGAVLGMIL 74
                7999************99999999999888888899999999999875 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   8.4     0.001       3.1      63     112 ..      23      76 ..      19      81 .] 0.72

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.001
   RseC_MucC  63 llkaallvYllPllllilgallgsall....gssellaalgallglvlgflivr 112
                 ++ aal v++ P+++ +lg++lg + +        ++aa+++++g+vlg+++  
  KIR65632.1  23 FVFAALAVFVSPVIFGLLGVILGVVGAvlgdKPLGWYAAAASVAGAVLGMILSA 76 
                 6789***************99998877777734445666666666666665544 PP

>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  11.2    0.0015       4.4     154     213 ..      21      78 ..      14      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0015
        VIT1 154 lpylfvesvglalvvsiavtllalllfGavkalltgssk.lvsalrmlliGalAaaaayli 213
                 ++++f   + la++vs ++++l  +++G+v+a+l++++  +++a   +++ +l+++++ +i
  KIR65632.1  21 VAFVF---AALAVFVSPVIFGLLGVILGVVGAVLGDKPLgWYAAAASVAGAVLGMILSAVI 78 
                 34444...469999******************************************99876 PP

>> Phage_holin_5_2  Phage holin family Hol44, in holin superfamily V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.19   5.6e+02      26      41 ..      17      32 ..      12      34 .. 0.71
   2 ?    9.5   4.3    0.0004       1.2      24      62 ..      34      76 ..      32      80 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.19
  Phage_holin_5_2 26 ilgiiGiilgvvivft 41
                     i++i+  ++++++vf+
       KIR65632.1 17 ICTIVAFVFAALAVFV 32
                     6777777777766665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0004
  Phage_holin_5_2 24 PlilgiiGiilgvvivft.a...dfqaedilifgaiiqGilsg 62
                     P+i g++G+ilgvv+ ++ +    + a++  ++ga++  ils+
       KIR65632.1 34 PVIFGLLGVILGVVGAVLgDkplGWYAAAASVAGAVLGMILSA 76
                     99************99996589988888888888888777776 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   7.1      0.01        30      15      64 ..      13      74 ..       2      80 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.01
     DUF4231 15 rrfrllrlitivlgallpilvs............sklgagvsvlkiltallsalvailaale 64
                + +r++ +++ v++al+ +++                  g   l + +a++s++ a+l  + 
  KIR65632.1 13 NAARICTIVAFVFAALAVFVSPvifgllgvilgvVGAVLGDKPLGWYAAAASVAGAVLGMIL 74
                44555555555555555555548888898888873345556777788888888777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1110  (0.0619109); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 588.64
//
Query:       KIR65633.1  [L=104]
Description: ligand-binding protein SH3 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-23   83.3   7.6    1.8e-23   83.0   7.6    1.1  1  Multi_Drug_Res  Small Multidrug Resistance protein
  ------ inclusion threshold ------
      0.037   13.9   1.7      0.037   13.9   1.7    2.1  3  DUF378          Domain of unknown function (DUF378)
       0.34   11.1  10.7       0.46   10.6  10.7    1.3  1  EamA            EamA-like transporter family
       0.92    9.4   8.3       0.07   13.0   2.4    2.0  2  DUF2721         Protein of unknown function (DUF2721)


Domain annotation for each model (and alignments):
>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   7.6   4.1e-27   1.8e-23       1      93 []       1      93 [.       1      93 [. 0.99

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 4.1e-27
                    XX-HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH CS
  Multi_Drug_Res  1 mnwvllvlAillevvgailLklsegftkltpsllvivgygisfllLskalkslpvsvAYavwsGiGtvlivlvgillfgeslslkkliglali 93
                    m+w++lv+ +lle ++a++L  s+gft+l ps+++ v++++s++ L++al+++pv++ Yavw GiG+v+++lvg+l ++es+sl +++ l l+
      KIR65633.1  1 MAWIVLVISGLLETAWAVALDRSAGFTRLVPSVVFAVALVLSMAGLAYALREIPVGTGYAVWVGIGAVGTALVGMLALHESASLPRIVCLLLV 93
                    89***************************************************************************************9997 PP

>> DUF378  Domain of unknown function (DUF378)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       0.7   3.2e+03       9      52 ..       4      10 ..       1      16 [. 0.51
   2 ?   -1.0   0.4      0.37   1.7e+03      38      54 ..      24      40 ..       5      46 .. 0.65
   3 ?   13.9   1.7   8.2e-06     0.037      18      58 ..      62     102 ..      58     104 .] 0.92

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.7
      DUF378  9 iLviiGalNWgliGlfdfdLVaalfggessllsriiYilVglag 52
                i ++i                                     +g
  KIR65633.1  4 IVLVI-------------------------------------SG 10
                33333.....................................33 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.37
      DUF378 38 sllsriiYilVglagly 54
                + ++r++ ++V   +l+
  KIR65633.1 24 AGFTRLVPSVVFAVALV 40
                45566666666555554 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 8.2e-06
      DUF378  18 WgliGlfdfdLVaalfggessllsriiYilVglaglylisl 58 
                 W  iG ++  LV +l  +es+ l ri++ l  +ag++ + +
  KIR65633.1  62 WVGIGAVGTALVGMLALHESASLPRIVCLLLVVAGVVGLKV 102
                 999*********************************98766 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  10.7    0.0001      0.46      38     135 ..       6     100 ..       1     102 [. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0001
        EamA  38 fliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnasli.tslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 ++i+g+l  ++a+  +++   +++   l   ++ +++ vl +  + yal+++++++   + + +  v t++ ++l l+e+ +l  ++ ++l+++Gv+ +
  KIR65633.1   6 LVISGLLETAWAVALDRSA-GFTR---LVPSVVFAVALVLSMAGLAYALREIPVGTGYAVwVGIGAVGTALVGMLALHESASLPRIVCLLLVVAGVVGL 100
                 4555555555555555555.3332...222333445667777779**********998777***********************************975 PP

>> DUF2721  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.4   1.6e-05      0.07      71     123 ..       7      56 ..       1      62 [. 0.72
   2 ?   -0.0   0.4      0.17   7.6e+02      91      95 ..      81      85 ..      57     102 .. 0.45

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
     DUF2721  71 vlsallvvlvvlllflsallsldlsllaailfvlalllllvslllflrEirls 123
                 v+s+ll ++  ++l  sa +   + l+++++f++al+l +++l++ lrEi + 
  KIR65633.1   7 VISGLLETAWAVALDRSAGF---TRLVPSVVFAVALVLSMAGLAYALREIPVG 56 
                 55555554444444443333...67899*********************9765 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.17
     DUF2721 91 sldls 95
                s++l 
  KIR65633.1 81 SASLP 85
                22223 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 750.57
//
Query:       KIR65634.1  [L=307]
Description: ornithine cyclodeaminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-43  149.3   3.8    1.5e-43  148.9   3.8    1.1  1  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil
    8.4e-06   25.9   0.0    1.6e-05   25.0   0.0    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    0.00078   20.0   0.2     0.0019   18.7   0.2    1.7  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.9   3.8   2.5e-47   1.5e-43      20     300 ..      19     289 ..       6     301 .. 0.91

  Alignments for each domain:
  == domain 1  score: 148.9 bits;  conditional E-value: 2.5e-47
                      CHHHHHHHHHHHHCC-CE----EEEEECCGTEEEEEEEEEETTTTEEEEEEEEEETTTCCCTSSSEEEEEEEE-TTT--EEEEEE-HHHHHHHH CS
  OCD_Mu_crystall  20 lakaveeafrrlasgkvkkpprvalevkdsrgelevmpaylagrellgvKlvnshpenkksglptvtalvvLndpetGvplalmdatlltalRT 113
                       + a+ +a+ + + g++  ppr a       g++ +   +l g e +g++ +  +      g p    +vvL d  tG+  a+  +  l + RT
       KIR65634.1  19 TVAAMRDALLAAHAGRLVAPPRAAAALGG--GRMVLTAGHLTG-EWYGFRSYDTF------GHPEGEQVVVLHDGRTGAVRAVAVGDELGSRRT 103
                      56667778888888888888888888877..777777777777.77777776655......89999**************************** PP

                      HHHHHHHHHHHS-TT--EEEEE--SHHHHHHHHHHCCCS--SEEEEE-SSHHHHHHHHHHCCS..CTT-EEECSCHHHHTTSSEEEE----SS- CS
  OCD_Mu_crystall 114 aAvsavaakyLarkdasvlaiiGaGvqaetqlealkavldikevriydrdeeaaekfaenlqe.fefevsackseeeavegadivvtvTaakap 206
                      +  ++va+  Lar+da +l+++G G+qa+tq+ a  av++++ev +  r+   +e+fa ++++  ++  +a++s++ av + d+vv +T+a  p
       KIR65634.1 104 GGLGGVAVDALARPDAVTLGVVGSGAQAWTQVWAAAAVRPLREVTVHSRSAARREAFAARIRAeLDVPARAVDSARAAVRERDVVVLATTAVTP 197
                      **************************************************************977***************************** PP

                      SB-GGGS-TT-EEEE-S--STT--SB-HHHHHCCEEEE.SHHHHHHHCCCCHCHHHTTSSTCGGEEEEHHHHHCTSS-..-STTSEEEEE---- CS
  OCD_Mu_crystall 207 ilkaewvkpGahinavgadapgkteLdddilkradifv.dseaqareeGeiqvaiekgvlaedakvaelgeviaGkkpGRtsdeeitlfdsvGl 299
                      +l a  + pG+h+n vg    +++e   d+l  ad++v ds+aqa  + +  +   + + a +    +lg v+aG  +GRt + ++ +f s+Gl
       KIR65634.1 198 VLDAADLAPGTHVNTVGFKQVDRHEFGTDLLDAADVLVtDSPAQAAAYDPPML---ATLPAYAGWLGDLGAVLAGDAAGRTGADQVSVFCSTGL 288
                      **************************************9********998777...788899999****************************9 PP

                      H CS
  OCD_Mu_crystall 300 a 300
                      a
       KIR65634.1 289 A 289
                      8 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   2.6e-09   1.6e-05      15      97 ..     122     206 ..     110     218 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2.6e-09
                   EEEES-SHHH.HHHHHHHHCCT-CEEEEEESSHHHHHHHHHHH.T.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS-SB-HHHHHC CS
  Shikimate_DH  15 vlliGaGema.elvakhLlakgvkkvvvaNRtlerakelaeel.kgeeiealkleelkellaeadvvisataseepilekeevee 97 
                     ++G G  a ++v  + + + +++v+v  R+ +r +++a ++  + ++ a+++++ +++++e dvv+ at + +p+l+++++  
    KIR65634.1 122 LGVVGSGAQAwTQVWAAAAVRPLREVTVHSRSAARREAFAARIrAELDVPARAVDSARAAVRERDVVVLATTAVTPVLDAADLAP 206
                   568888877624555666667899*******************44557899***************************9988765 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   3.2e-07    0.0019       2      69 ..     122     192 ..     121     210 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.2e-07
                    EEEETTSHHHHHHHHHHHHTTS.-GGCEEEEEESSCCCHHHHHHHHC......-EEECECHHHHHHH-SEEEE-S CS
  F420_oxidored   2 igiiGaGnmgealasgllaaga.qpheivvansrnpekaeelaeelg......vkvtavdneeaaeeadvvvlav 69 
                    +g++G+G  ++a ++ ++aa + + +e++v  sr+  ++e++a+++       +++   ++  a++e dvvvla 
     KIR65634.1 122 LGVVGSG--AQAWTQVWAAAAVrPLREVTVH-SRSAARREAFAARIRaeldvpARAVD-SARAAVRERDVVVLAT 192
                    5666666..6677788888877899****55.**************999997666666.7888999*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1961.45
//
Query:       KIR65635.1  [L=499]
Description: ribosomal protein S12 methylthiotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-29  101.5   0.2    3.2e-29  100.9   0.2    1.3  1  UPF0004      Uncharacterized protein family UPF0004
    5.9e-21   75.6   0.0    1.2e-20   74.5   0.0    1.6  1  Radical_SAM  Radical SAM superfamily
    7.1e-14   51.7   1.3    2.5e-13   50.0   0.5    2.3  3  TRAM_2       TRAM domain
  ------ inclusion threshold ------
      0.055   13.1   0.0      0.088   12.5   0.0    1.2  1  TraT         Enterobacterial TraT complement resistance prote
      0.086   12.6   0.0       0.45   10.3   0.0    1.9  2  CLP1_P       mRNA cleavage and polyadenylation factor CLP1 P-


Domain annotation for each model (and alignments):
>> UPF0004  Uncharacterized protein family UPF0004
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.2   8.9e-33   3.2e-29       1      97 [.      15     108 ..      15     109 .. 0.97

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 8.9e-33
                 XEEEE--S-CCCCHHHHHHHHHTTTSSS----SSS--SEEEEEE--SSSSHHHHTHHHHHHHHTTST.--EEEEEEHHHHS-HHHHHHH-TTS-EEE CS
     UPF0004   1 kvaietlGCqmNevdseelaslLkkegyelvedeeeAdvvlvnTCavrekaekkviqalrelkalkkpekkvvvlGCmaqrekeellkeepevdlvl 97 
                 +va+ tlGC +Nevdseela++L+++g+++++d e Advv+vnTC+++eka++++iq+l +++++    +kvv++GCma+r+++el+++ pe+++vl
  KIR65635.1  15 RVALLTLGCARNEVDSEELAARLHADGWQVTTDGEGADVVVVNTCGFVEKAKQDSIQTLLAAADTG---AKVVAAGCMAERYGRELADSLPEAQAVL 108
                 7999*********************************************************99987...9**********************99997 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   3.4e-24   1.2e-20       4     167 .]     194     363 ..     191     363 .. 0.88

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 3.4e-24
                  ESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGS.......TTHHHHHHHHHHTCCCTEEEEEEECSSCHG...H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...x RF
  Radical_SAM   4 trgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggeplly.......pdfvellerlaklavpgiritvetngtlpd...e 91 
                    gC +rC fCa+p     +g   s++++e+l+e+++l a+ gv+e++l++ + + y       + +++ll +la+    +  ++v ++++ p    +
   KIR65635.1 194 ASGCDRRCAFCAIPA---FRGAFVSRTPDELLAEAEWL-AKTGVRELVLVSENSTSYgkdlgdpRALEKLLPQLAAV---DGIVRVRASYLQPAetrP 284
                  68************8...8*******************.8**********999999988888776677777777776...555555555555555589 PP

                  HHHHHHHHTT..-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET...EEEEEEEBTTTSHHHHHHHHHHH CS
                  xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  92 eklerllelg..vdrvslgleaaddekvlklmnrghtfeevlealeklreagikr...vvdrivglpGendeeleellell 167
                    +e+++  +    ++ l+ ++ ++  vl++m+r ++ +++le+l ++r++  ++    +++ivg+pGe++ +++el+++l
   KIR65635.1 285 GLVEAIATTPgvAPYFDLSFQHSSEP-VLRRMRRFGSTDRFLELLTAARAL-APEagaRSNFIVGFPGETRGDVDELVRFL 363
                  999999999999*************8.******99****************.788899********************996 PP

>> TRAM_2  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.3   8.2e+03      28      37 ..     266     275 ..     265     282 .. 0.82
   2 ?   -1.9   0.0       1.1   3.9e+03      27      46 ..     355     374 ..     354     375 .. 0.79
   3 !   50.0   0.5   6.9e-17   2.5e-13       2      61 ..     420     485 ..     419     487 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.3
                 TS--EEEES- CS
      TRAM_2  28 vDgevyvtga 37 
                 vDg v+v+++
  KIR65635.1 266 VDGIVRVRAS 275
                 89***99865 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
                 TTS--EEEES---T...T-E CS
      TRAM_2  27 EvDgevyvtgaeklskvGdf 46 
                 +vD+ v++ +a+ l+++G f
  KIR65635.1 355 DVDELVRFLSAARLDAIGMF 374
                 89******988876447776 PP

  == domain 3  score: 50.0 bits;  conditional E-value: 6.9e-17
                 TSEEEEEEEEEETTEEEEEETTS-TTTS--EEEES---T.........T-EEEEEEEEEETTEEEE CS
      TRAM_2   2 GktvevlvdgeeeglyvGRsyadAPEvDgevyvtgaekl.sk.....vGdfvkvkItdadeyDLiG 61 
                 G+tvevlvd++++g++ GR++++APEvDg +++ ++++  ++     +Gd+v++ +t+++++DL++
  KIR65635.1 420 GSTVEVLVDSVDDGVVEGRAAHQAPEVDGSTTLVAPADGgVDlaalrPGDLVRATVTATEGVDLVA 485
                 99*****************************999988876669*********************98 PP

>> TraT  Enterobacterial TraT complement resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.5e-05     0.088      36     102 ..      27      90 ..      19     126 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.5e-05
        TraT  36 eldleqkiiskLeakGYkvvndpkeAayiLqanvlyvdkktdkaaaegalkaGfggalagaaagaai 102
                 e+d +++++++L+a G++v++d + A  ++  +   v+k +++  ++++l+a+  g ++ +aag ++
  KIR65635.1  27 EVD-SEELAARLHADGWQVTTDGEGADVVVVNTCGFVEK-AKQDSIQTLLAAADTG-AKVVAAGCMA 90 
                 566.7899***********************99999999.7777777777777333.3333333333 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00013      0.45     102     136 ..      50      84 ..      30     119 .. 0.74
   2 ?   -0.5   0.0      0.25     9e+02      33      56 ..     381     404 ..     372     413 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00013
      CLP1_P 102 kasgliIntpGwvkglgaellleliealepdvvvv 136
                 +a+++++nt+G+v+++  + ++ l++a    + vv
  KIR65635.1  50 GADVVVVNTCGFVEKAKQDSIQTLLAAADTGAKVV 84 
                 7899**************99999999988743333 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.25
      CLP1_P  33 GqseispPgtislalverpidvee 56 
                 G    ++Pg +s+a ++r +d  +
  KIR65635.1 381 GTEAAGLPGKVSAATIKRRYDRLS 404
                 5567799**********9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3623.31
//
Query:       KIR65636.1  [L=200]
Description: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-14   53.6   1.4    2.8e-14   53.6   1.4    2.2  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
  ------ inclusion threshold ------
      0.016   15.3   0.4      0.035   14.1   0.4    1.6  1  DUF2700          Protein of unknown function (DUF2700)
        3.3    7.2   4.7        4.4    6.8   4.7    1.1  1  SseC             Secretion system effector C (SseC) like fami
          5    8.0   8.7          3    8.7   2.6    2.5  2  HXXEE            Protein of unknown function with HXXEE motif


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   1.4   6.2e-18   2.8e-14       1      66 []      20      90 ..      20      90 .. 0.80
   2 ?   -1.1   1.3      0.75   3.4e+03      22      22 ..     136     136 ..      92     186 .. 0.52

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 6.2e-18
                     S-HHHHHHHHHHHHHHHHHGGGS-H...........HHHHHHHH.HHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf  1 nlPnaiTllrlllsvlailllltyyp.........lvlaillll.iasltDalDGklARrlnqvstlGkllDslaD 66
                     n++n +Tllrl+l+ + +     ++          + +a++l++ +as+tD++DG++ARr++ v++ Gk+ D++aD
       KIR65636.1 20 NAANGLTLLRLVLVPVFA-----ASVvasgathagWRIAACLIFaVASVTDLVDGWIARRFGLVTSVGKVADPIAD 90
                     689*********944433.....3334455789995555555545******************************9 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.75
                      G CS
  CDP-OH_P_transf  22 l 22 
                      +
       KIR65636.1 136 A 136
                      0 PP

>> DUF2700  Protein of unknown function (DUF2700)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   7.9e-06     0.035      65      90 ..      21      46 ..      15      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.9e-06
     DUF2700 65 ialilavllllivPvvvasfvAsglv 90
                +a  l++l+l++vPv+ as vAsg+ 
  KIR65636.1 21 AANGLTLLRLVLVPVFAASVVASGAT 46
                5667999*****************74 PP

>> SseC  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.7   0.00099       4.4      76     159 ..      37     173 ..      28     190 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00099
        SseC  76 alkvgaslll.aavgvAgglmdaalgiadevvaaatt.kslideem...qpimdvv........................................... 126
                 a++v+as ++ a   +A+ l+ a ++++d+v   ++    l++      +pi+d++                                           
  KIR65636.1  37 AASVVASGAThAGWRIAACLIFAVASVTDLVDGWIARrFGLVTSVGkvaDPIADKAltgaallllswydllpwwvtgvilvrelgitalrfwvirhgvi 135
                 67899999999******9999999******9886664144444443566************************************************** PP

        SseC 127 .....dkaqlageivgavvaavavvaavvavgsaakga 159
                      +k+++a +i++    + ++ a+  avg+   +a
  KIR65636.1 136 aasrgGKIKTALQILAITWYLWPMPAGLAAVGPWLMAA 173
                 **************999889999988888888754444 PP

>> HXXEE  Protein of unknown function with HXXEE motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.4      0.05   2.2e+02      40      99 ..      30      80 ..       7      89 .. 0.57
   2 ?    8.7   2.6   0.00067         3      43      91 ..     145     194 ..      93     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.05
       HXXEE 40 lvlvlvvnallvwlilalallakrepllglallafllvnlltHiaqalvlksYnPGlvTa 99
                lvlv v++a +v      a  a++  + ++a+l+f+++ + t ++ +++ +++  GlvT+
  KIR65636.1 30 LVLVPVFAASVV------ASGATHAGWRIAACLIFAVASV-TDLVDGWIARRF--GLVTS 80
                333333333333......3323333333333334444444.777777777776..66665 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00067
       HXXEE  43 vlvvnallvwli.lalallakrepllglallafllvnlltHiaqalvlks 91 
                 ++  + +++w++  + a la   p+l++a++++++v ++  +aqal+l++
  KIR65636.1 145 TALQILAITWYLwPMPAGLAAVGPWLMAAAVGVTVVTGFDYVAQALRLRR 194
                 4445556777775688889999****************9******99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1507.88
//
Query:       KIR65637.1  [L=152]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-12   46.4   3.2      8e-12   45.3   3.2    1.5  1  HTH_31    Helix-turn-helix domain
    7.8e-11   41.9   0.2    1.1e-10   41.4   0.2    1.2  1  HTH_3     Helix-turn-helix
      1e-06   28.6   0.0    1.3e-06   28.3   0.0    1.2  1  HTH_19    Helix-turn-helix domain
    0.00015   21.6   0.4     0.0003   20.6   0.4    1.6  1  HTH_25    Helix-turn-helix domain
    0.00038   20.8   0.0    0.00055   20.3   0.0    1.2  1  HTH_26    Cro/C1-type HTH DNA-binding domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   3.2   2.2e-15     8e-12       2      61 ..       8      66 ..       7      69 .. 0.95

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 2.2e-15
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaer 61
                +G+ Lra+R+ +  +++ev  +++vs  +ls +E+G+  +ps + l+a+++alg+  +e+
  KIR65637.1  8 IGDALRARRQGQHRTLREVSSAANVSLGYLSEIERGQK-EPSSELLAAICDALGARLSEL 66
                699***********************************.8***************98776 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.2   3.1e-14   1.1e-10       1      55 []      12      66 ..      12      66 .. 0.97

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 3.1e-14
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsldel 55
                l+++R+ +  +++e++ +++vs  ++s iE+G+ +Ps e l ++++aLg  l+el
  KIR65637.1 12 LRARRQGQHRTLREVSSAANVSLGYLSEIERGQKEPSSELLAAICDALGARLSEL 66
                899**********************************************998886 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   3.7e-10   1.3e-06       4      61 ..      12      68 ..       9      72 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 3.7e-10
      HTH_19  4 LkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyllq 61
                L++ R     t++e+++ + +s +++s+iE g+k +ps+ell +i+ alg  l +ll 
  KIR65637.1 12 LRARRQGQHRTLREVSSAANVSLGYLSEIERGQK-EPSSELLAAICDALGARLSELLR 68
                5555555555************************.***************99999986 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.4   8.4e-08    0.0003       1      34 [.      11      44 ..      11      66 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 8.4e-08
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHCT- CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEedd 34
                +Lra+R+ +  +l+ev+   +++  yl ++E+++
  KIR65637.1 11 ALRARRQGQHRTLREVSSAANVSLGYLSEIERGQ 44
                59******************************96 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.5e-07   0.00055      12      59 ..      22      68 ..      12      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.5e-07
      HTH_26 12 tkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLle 59
                t  e++ ++++s + ls +  g+ + +s + L++iCdaLg ++++Ll 
  KIR65637.1 22 TLREVSSAANVSLGYLSEIERGQ-KEPSSELLAAICDALGARLSELLR 68
                67788999**************9.8*********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1134.47
//
Query:       KIR65638.1  [L=293]
Description: hypothetical protein TK50_09730 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-45  153.4  30.1    8.6e-45  153.0  30.1    1.1  1  PspA_IM30      PspA/IM30 family
  ------ inclusion threshold ------
      0.017   15.7   0.3      0.017   15.7   0.3    4.2  5  DUF883         Bacterial protein of unknown function (DUF883)
        9.3    6.4  19.9        3.1    8.0   4.4    2.4  2  Jnk-SapK_ap_N  JNK_SAPK-associated protein-1


Domain annotation for each model (and alignments):
>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.0  30.1   1.4e-48   8.6e-45       1     219 [.       3     242 ..       3     244 .. 0.98

  Alignments for each domain:
  == domain 1  score: 153.0 bits;  conditional E-value: 1.4e-48
   PspA_IM30   1 gifkrllrllraniselldkaeDPekileqairdmqselakarqalaqviarqkqlerkleeqkeqakklekkAkaALtkg..............eeeL 85 
                 ++f++ +++l+a + + +d+++DP+++++qai+++q++++++ q++a vi++q+qle+kl +q  ++++l+ +A++AL  +              +e+ 
  KIR65638.1   3 NPFVKGWKYLMALFGARIDEHADPKVQIQQAIEEAQRQHQALVQQAAAVIGNQRQLEMKLSRQMTEVERLQGNARQALVLAdqarargdeaeagkYEQT 101
                 589************************************************************************************************ PP

   PspA_IM30  86 Arealaeikslekqaealetqlaqqrsaveqlrkqlealetkieelkakkellkarekaakaqeavqkslgkls...tesatdslerieeKieereara 181
                 A+ ++++++s+e+ +e+l+t+++q+  a++q+r+++e++ + ++++ a++++l++++++ak+qe v++sl+++s   ++++t+sl+ ++++ie+r+a+a
  KIR65638.1 102 AQVLATQLVSAEQATEDLKTLHDQALGAAAQARRAVENNSMILQQKLAERTKLLSQLEQAKMQESVAQSLESMSsltASGSTPSLDAVRDRIEQRYATA 200
                 *************************************************************************************************** PP

   PspA_IM30 182 daaaelae.saqdldakleaagiqkev.s..eqvlarlkaeq 219
                  ++aela+ s+ +++ +++ a  + ++ s  eq++a++++eq
  KIR65638.1 201 MGRAELAGnSVEGRMLEIQKASLDSAGsSrlEQIRASMAGEQ 242
                 ********77777**************55*********9987 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.5      0.18   1.1e+03      41      59 ..      31      49 ..      21      58 .. 0.47
   2 ?   -4.4   7.1         3   1.8e+04      24      39 ..      64      79 ..      29     110 .. 0.44
   3 ?    2.2   4.0     0.045   2.7e+02      21      59 ..     111     149 ..      92     158 .. 0.76
   4 ?   15.7   0.3   2.8e-06     0.017       8      65 ..     165     222 ..     157     234 .. 0.90
   5 ?   -2.3   0.0       1.2   6.9e+03      38      51 ..     229     242 ..     221     273 .. 0.60

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.18
      DUF883 41 erarerlrdaeeavaerak 59
                ++a e+++++ +a++++a 
  KIR65638.1 31 QQAIEEAQRQHQALVQQAA 49
                2223333333333333333 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 3
      DUF883 24 eageeaeelRerleer 39
                + + e+e+l  +++++
  KIR65638.1 64 RQMTEVERLQGNARQA 79
                2333333333333333 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.045
      DUF883  21 aadeageeaeelRerleerlerarerlrdaeeavaerak 59 
                 +a++a e++++l +++  ++++ar ++++ ++ ++++  
  KIR65638.1 111 SAEQATEDLKTLHDQALGAAAQARRAVENNSMILQQKLA 149
                 577889999999999999999999999988777777665 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 2.8e-06
      DUF883   8 eslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaa 65 
                 es+ ++le++ + +a+ +  +++++R+r+e+r ++a  r++ a ++v+ r+ e+ +a 
  KIR65638.1 165 ESVAQSLESMSSLTASGSTPSLDAVRDRIEQRYATAMGRAELAGNSVEGRMLEIQKAS 222
                 78999*******************************************9998887765 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 1.2
      DUF883  38 erlerarerlrdae 51 
                 +rle+ r++++  +
  KIR65638.1 229 SRLEQIRASMAGEQ 242
                 55555555554333 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.4   0.00052       3.1      79     128 ..      29      78 ..      15      93 .. 0.83
   2 ?    4.5   7.2    0.0064        38      47     109 ..     107     169 ..      97     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00052
  Jnk-SapK_ap_N  79 eleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeae 128
                    +++++ ++ ++++++l ++ + +  ++r+le+k++ + ++++rl+ +  +
     KIR65638.1  29 QIQQAIEEAQRQHQALVQQAAAVIGNQRQLEMKLSRQMTEVERLQGNARQ 78 
                    566777778888889999999999********************998776 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0064
  Jnk-SapK_ap_N  47 eeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrele 109
                     + + +e+  e+l++L  +    +++ +ra e+   i +q   er +l +++eq + ++   +
     KIR65638.1 107 TQLVSAEQATEDLKTLHDQALGAAAQARRAVENNSMILQQKLAERTKLLSQLEQAKMQESVAQ 169
                    566789999**********99999998888888888888888888899999999887665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1821  (0.101567); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2016.84
//
Query:       KIR65639.1  [L=277]
Description: hypothetical protein TK50_09735 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.004   17.1   6.5      0.014   15.3   2.0    2.9  3  SLATT_1   SMODS and SLOG-associating 2TM effector domain 1


Domain annotation for each model (and alignments):
>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   2.0   8.1e-07     0.014       8      73 ..       3      69 ..       1      73 [. 0.85
   2 ?   -2.4   0.0      0.23   4.2e+03      93     115 ..     154     176 ..     144     178 .. 0.75
   3 !    2.8   0.0    0.0059   1.1e+02      15      48 ..     229     262 ..     215     268 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.1e-07
     SLATT_1  8 eqldwYrkkaeeneraakrwrlllillellalllaalrafgelsvdlvgvl.aavaaallaWlelkq 73
                ++++ Y +++++ +r+a+rw++l   l+++a++l+ +  +g  + +++g++ +ava a   W++l+ 
  KIR65639.1  3 DERARYFRQLRRLRRSARRWSVLGGGLTGAAAVLTPYAGLGLPDAAWAGAAgSAVALAAWRWIDLRA 69
                5677899*****************************9999999998888773566668888888875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.23
     SLATT_1  93 aaleaeateeewaklVadaEeai 115
                 +a +a+++ +e+a  Va++E+a+
  KIR65639.1 154 EAAAADRSLRELAGRVASVERAL 176
                 45555777788888888888886 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.0059
     SLATT_1  15 kkaeeneraakrwrlllillellalllaalrafg 48 
                  +a++ + aa+r+  ++ ll+++a +la lr++g
  KIR65639.1 229 GRAASEQAAASRLAEATDLLHGVASALAELRTVG 262
                 58999999**********************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.55
# Mc/sec: 1503.42
//
Query:       KIR65640.1  [L=298]
Description: DNA glycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-10   39.5   4.6    7.3e-10   38.5   4.6    1.5  1  zf-FPG_IleRS     Zinc finger found in FPG and IleRS
    1.8e-09   37.4   0.0    2.8e-09   36.8   0.0    1.3  1  H2TH             Formamidopyrimidine-DNA glycosylase H2TH dom
    6.7e-06   26.7   0.0    1.1e-05   26.1   0.0    1.4  1  Fapy_DNA_glyco   Formamidopyrimidine-DNA glycosylase N-termin
     0.0015   18.5   0.5       0.61   10.2   0.0    2.5  2  Phageshock_PspD  Phage shock protein PspD (Phageshock_PspD)
  ------ inclusion threshold ------
      0.077   13.0   0.7       0.13   12.3   0.7    1.3  1  DZR              Double zinc ribbon


Domain annotation for each model (and alignments):
>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   4.6     2e-13   7.3e-10       2      29 ..     252     279 ..     251     280 .. 0.97

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 2e-13
                   SB-TTT--BBEEEECTTEEEEE-TTTT. CS
  zf-FPG_IleRS   2 epCpRCwryiervgqagrstyfCprCqk 29 
                   +pC+RC++ i+++++++r ty+Cp Cq+
    KIR65640.1 252 QPCRRCGTAIRKEELGERVTYWCPACQP 279
                   8**************************7 PP

>> H2TH  Formamidopyrimidine-DNA glycosylase H2TH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   7.9e-13   2.8e-09       1      57 [.     147     204 ..     147     213 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 7.9e-13
                 ---BTTSTTS-HHHHHHHHHT-.-SBHHHHHHCTTTSCS--HHHHHHHHHHTT--TTS CS
        H2TH   1 Lgpeplseaftvdalaerlkkk.krkiktlLLDqklvaGlGNiyadEvLfrakihPer 57 
                 Lgp+ l  + + +++++rl+   + +i+++LLDq++ aG+GN+y  EvLf  +++P +
  KIR65640.1 147 LGPDLLGADWDPAEAVRRLAAApEATIGEALLDQRNLAGVGNLYKCEVLFLRGLSPWT 204
                 78999989999988888888775889*****************************976 PP

>> Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0     3e-09   1.1e-05       1      82 [.       1      98 [.       1     148 [. 0.81

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3e-09
                    X--HHHHHHHHHHHHHHHTT-EEEEEEE-SSHHHTSTHHHHHTT-.SEEEEEEEEETTEEEEEE.........................EEEEEEE- CS
  Fapy_DNA_glyco  1 MPElpEVetvrrglrrhllgkkiakvevlkdktlrgspaafakalkgrkiasvgrrGKyllleldg.......................gevlvvhl 74
                    MPE   V  ++r+l r+l g+++++ ++ + + l+g      + l g ++++  +rGK+lll+l+                        g +l  hl
      KIR65640.1  1 MPEGDTVWNTARVLGRALGGARLTASDF-RVPRLAG------TDLAGWTVRESASRGKHLLLRLAApapagpgagptgrsttrgpggvaGWTLHSHL 90
                    9***********************9999.4455555......689*******************656666666777777778888888899999*** PP

                    TTTEEESS CS
  Fapy_DNA_glyco 75 gmtGrlli 82
                    +m G ++ 
      KIR65640.1 91 RMDGAWRA 98
                    ****9965 PP

>> Phageshock_PspD  Phage shock protein PspD (Phageshock_PspD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.2    0.0037        13      23      45 ..      36      58 ..      31      62 .. 0.84
   2 !   10.2   0.0   0.00017      0.61      19      32 ..      75      88 ..      72      93 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0037
  Phageshock_PspD 23 aGvAGWAvksvArrPLkllLAvA 45
                     + +AGW v+  A r  +llL +A
       KIR65640.1 36 TDLAGWTVRESASRGKHLLLRLA 58
                     569***********999998776 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00017
  Phageshock_PspD 19 rYgPaGvAGWAvks 32
                     + gP+GvAGW   s
       KIR65640.1 75 TRGPGGVAGWTLHS 88
                     569*******9988 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.7   3.6e-05      0.13      11      36 ..     250     279 ..     247     285 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.6e-05
         DZR  11 darfCseCgtklkavaa....edrCpsCge 36 
                 +a+ C +Cgt++++++      + Cp+C+ 
  KIR65640.1 250 RAQPCRRCGTAIRKEELgervTYWCPACQP 279
                 6889********9666599*********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2139.43
//
Query:       KIR65641.1  [L=260]
Description: hypothetical protein TK50_09755 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-78  262.6   0.1    3.2e-78  262.4   0.1    1.0  1  SAM_adeno_trans  S-adenosyl-l-methionine hydroxide adenosyltr


Domain annotation for each model (and alignments):
>> SAM_adeno_trans  S-adenosyl-l-methionine hydroxide adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.4   0.1   1.8e-82   3.2e-78       1     234 [.       4     253 ..       4     254 .. 0.93

  Alignments for each domain:
  == domain 1  score: 262.4 bits;  conditional E-value: 1.8e-82
                      EEEEESSTSSSSHHHHHHHHHHHH-TTSEEEEEES-S-TT-HHHHHHHHHHHHGGS-TTEEEEEE--TTTTSS--EEEEEETTSEEEEESSSTT CS
  SAM_adeno_trans   1 itLlTDFGlkdpyvgamkgvilsiapdarivDitHdippfdvreaaflLaaalpyfpkgtvhlavVDpgvgterralvveakggyfvgPDNGll 94 
                      i L+TD+Gl+d++v+a++gvi+++ap +r++D+tH +pp dvr++a +La+++py+p+g vh+avVDpgvgt+rr +++ ++gg++vgPDNGll
       KIR65641.1   4 ISLTTDYGLADGFVAACHGVIARLAPAVRVIDVTHLVPPADVRRGAAVLAQTVPYLPEG-VHVAVVDPGVGTARRGVALATPGGTLVGPDNGLL 96 
                      89*******************************************************98.********************************** PP

                      HHHH....SEEEEEEGSSCC.....--TS-HHHHTHHHHHHHHHCT--GGGCSEEESGGGS-SSS....E..CSCEEEEEEEE-TTS-EEEEEE CS
  SAM_adeno_trans  95 tlal....lleeaveieeee.....ssatFhgrDvFapvaarlaagvsleelgeeldpeelvrle....e..derlegevlyvDrFGNvitnis 173
                        a+    ++++ave++++      +s+tFhgrDvFapvaarla+g +l++ g+++dp+ lvrl+    +   + + +evl+vD+FGNv ++++
       KIR65641.1  97 PDAAealgGVTAAVELTNPAwlapeVSRTFHGRDVFAPVAARLASGAPLADAGPAVDPAGLVRLPepvvRdePGGFAAEVLTVDHFGNVQLAAP 190
                      *9998777669******9889999999**************************************877633356788***************** PP

                      ...EHHHHHTTCEE..EEEEESSGGGSTTTSEEEEE-TTSEEEEEETTC-HHHHHT--TT-EE CS
  SAM_adeno_trans 174 kelleelekerkva..klkkvetyaevaegellalvnssglleiavnkgsaaellglkvgdev 234
                      ++ l+ l ++  va  ++ + +t+++++ g l+a+v+s+gl++ avn g+aa++lg+++gd v
       KIR65641.1 191 GRRLAPLPARLRVAgrAAAHGRTFGDAPSGALVAYVDSAGLVAAAVNGGRAADVLGVAPGDLV 253
                      999988876655337544455***************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1788.53
//
Query:       KIR65642.1  [L=176]
Description: hypothetical protein TK50_09760 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-44  151.2   0.1    2.7e-44  151.1   0.1    1.0  1  Ser_hydrolase  Serine hydrolase
    1.2e-05   25.1   0.0      0.078   12.6   0.0    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
    0.00024   21.8  18.0    0.00058   20.5  18.0    1.6  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0056   16.0   0.0     0.0092   15.3   0.0    1.4  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.014   15.5   0.1        2.4    8.3   0.0    2.3  2  Abhydrolase_4  TAP-like protein


Domain annotation for each model (and alignments):
>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.1   0.1   7.4e-48   2.7e-44       1     169 [.       4     170 ..       4     172 .. 0.96

  Alignments for each domain:
  == domain 1  score: 151.1 bits;  conditional E-value: 7.4e-48
                    EEEE--TT--TTTTCHHHHHHHHCCTEEEEEC--TS--HHHHHHHHHHHHHC-STTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--SGGS.. CS
  Ser_hydrolase   1 llivpGlqgsgpeHWqsrwekklpaarrveqadwlkPdledWvaaleaaveaaeekvvlvAHSlgclavlhaaelqlakkvagalLVapadveeea 96 
                    +l+vpG ++  peHWq +++++ pa+r v++a   + + ++ vaal+aa++ ++e++vlvAHS gcl+v+ +a+   + +v+galLV p+dv+  +
     KIR65642.1   4 VLLVPGRNDPLPEHWQEWLARRDPARRMVRHATPGRYVADERVAALAAALDGVTEPAVLVAHSAGCLTVALWAASCGPGPVRGALLVTPPDVD--E 97 
                    699*****************************************************************************************6..6 PP

                    TT.GGGCGCTTS-SSHHCCHCEEEEETTBTTC-HHHHHHHHHHCT-EEEEETT-TTSSGGGT-SS-HHHHHHH CS
  Ser_hydrolase  97 aklaelaefaplpreklpfpslvvaSenDpyvsfeeaeelaeawgaelvdlgeaGHinadsgfgswpeglall 169
                    + ++ +     lp  +lpfps++ aS+ Dp++++++ae++a++w+aelvdlg aGH+    g+g+wp   +l+
     KIR65642.1  98 PWTDGTSVLPALPDAPLPFPSILAASRTDPVMTYDRAEHWARRWEAELVDLGDAGHLTTTDGYGPWPLAETLI 170
                    77778889999********************************************************987776 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.2e-05     0.078      73     113 ..      57      99 ..      40     112 .. 0.84
   2 !   11.1   0.0   6.4e-05      0.23     213     252 ..     117     155 ..      97     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.2e-05
                    SSEE.EEEETHHHHHHHHHHHHH.GGGEEEEEEESECSSCCHH CS
  Abhydrolase_1  73 dklt.lvGhSmGGmialayaaey.perVkalvllgaidpaasl 113
                     +++ lv+hS G+++++ +aa   p +V++  l+ ++d    +
     KIR65642.1  57 TEPAvLVAHSAGCLTVALWAASCgPGPVRGALLVTPPDVDEPW 99 
                    55555*****************9************95555555 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 6.4e-05
                    EEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSH CS
  Abhydrolase_1 213 ptlvisgtsDplvppkaledlaqllpkkrlvvisdagHla 252
                    p+++ ++++Dp+++++  e +a+ +   +lv + dagHl 
     KIR65642.1 117 PSILAASRTDPVMTYDRAEHWARRWEA-ELVDLGDAGHLT 155
                    9999***********************.**********85 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5  18.0   1.6e-07   0.00058      33     166 ..      35     163 ..       4     174 .. 0.48

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.6e-07
                    --TTSTS-GGCS--HHH.CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.....EEEEES-...----TTTS----TTHHHHHHTT-C.. CS
  Abhydrolase_6  33 DlpGhGrsdpppldled.ladlaalldelaagggpvvlvGHSlGGalalaaapla...lvvgvlldppp.talpagllaaalelllallallrl.. 121
                      pG        +  ++ +a+laa+ld++   + p+vlv+HS G++ ++++a+++   +v+g ll +pp +  p++++  +l+ l  ++ ++++  
     KIR65642.1  35 ATPGR-------YVADErVAALAAALDGV---TEPAVLVAHSAGCLTVALWAASCgpgPVRGALLVTPPdVDEPWTDGTSVLPALPDAPLPFPSil 120
                    22222.......22222356667777777...89************8888777779**99995555555433334444444444444444333311 PP

                    .....CCCHCCHS-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHH CS
  Abhydrolase_6 122 .....lawlsreplprlfladedadaawrarlarlaallaglgllpaaaw 166
                         +  +++ ++++++       ++w a l +l +      +  + +w
     KIR65642.1 121 aasrtDPVMTY-DRAEHWA------RRWEAELVDLGDAGHLTTTDGYGPW 163
                    10111222221.1222443......4555555555544444443334444 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.6e-06    0.0092      56     116 ..      38      98 ..      24     152 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.6e-06
  Hydrolase_4  56 ddyvdDlaafvekvkeehpelplfllGhSmGGliallyl.lrypdkvaglilsaPalkikak 116
                   +yv+D + +  +++ +  ++p +l++hS G l+++l++    p  v+g+ l+ P  +++++
   KIR65642.1  38 GRYVADERVAALAAALDGVTEPAVLVAHSAGCLTVALWAaSCGPGPVRGALLVTPP-DVDEP 98 
                  578999998888888899999******************44455599999999986.45544 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0062        22      36      67 ..       3      33 ..       1      55 [. 0.76
   2 ?    8.3   0.0   0.00068       2.4      34      77 ..     115     157 ..      97     161 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0062
  Abhydrolase_4 36 pvLllqnerDpaTPyegakklakalggavlvt 67
                   +vLl+ +++Dp  P ++++ la++ +  ++v 
     KIR65642.1  3 RVLLVPGRNDPL-PEHWQEWLARRDPARRMVR 33
                   79*********7.9999999999877444444 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00068
  Abhydrolase_4  34 aapvLllqnerDpaTPyegakklakalggavlvtvegeGHgala 77 
                     +p +l +++ Dp+  y  a++ a++ + a+lv   ++GH + +
     KIR65642.1 115 PFPSILAASRTDPVMTYDRAEHWARRWE-AELVDLGDAGHLTTT 157
                    578889999******************9.9**********8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1306.46
//
Query:       KIR65643.1  [L=399]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-13   50.0   0.8    2.7e-13   50.0   0.8    3.3  3  HTH_31    Helix-turn-helix domain
    5.1e-05   23.2   0.0     0.0001   22.2   0.0    1.5  1  HTH_19    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.035   14.4   0.6      0.035   14.4   0.6    3.6  4  TPR_12    Tetratricopeptide repeat
        1.3    9.8   0.1        1.3    9.8   0.1    6.1  6  TPR_4     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.8   6.1e-17   2.7e-13       2      59 ..       5      62 ..       4      68 .. 0.94
   2 ?   -2.6   0.2       1.6   7.3e+03       3      13 ..     108     119 ..     106     145 .. 0.60
   3 ?    2.3   0.2     0.048   2.2e+02      42      59 ..     345     362 ..     327     365 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 6.1e-17
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpa 59
                +G++L+ +ReraG +++ v++++g s+ ++  +E+ r+  p+ + l+++aral +d++
  KIR65643.1  5 FGQRLKLYRERAGKTRAVVGGLVGRSAEWVKAVENDRILPPRVHMLDRIARALKVDVS 62
                8*************************************888**************976 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.6
      HTH_31   3 GalLra.lRera 13 
                  ++L+a +R+r+
  KIR65643.1 108 SERLAAaWRARH 119
                 555555566665 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.048
      HTH_31  42 pspavlealaralgldpa 59 
                  + +++eal +a+++ p+
  KIR65643.1 345 DTGSAVEALRQAYDAAPE 362
                 5889**********9886 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.3e-08    0.0001       1      59 [.       6      64 ..       6      68 .. 0.96

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.3e-08
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aelllkiaealgidleyl 59
                G+rLk +Re +g t + + + +g s     a En+++  p+  ++l +ia+al++d+ +l
  KIR65643.1  6 GQRLKLYRERAGKTRAVVGGLVGRSAEWVKAVENDRI-LPPrVHMLDRIARALKVDVSAL 64
                9************************************.88889**************998 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.4      0.29   1.3e+03      50      75 ..     141     165 ..     108     167 .. 0.76
   2 ?   -1.8   0.0       0.9     4e+03       9      23 ..     205     219 ..     197     243 .. 0.73
   3 ?   -2.7   0.1       1.7   7.7e+03      26      53 ..     249     272 ..     248     276 .. 0.62
   4 ?   14.4   0.6   7.8e-06     0.035      39      76 ..     324     361 ..     305     362 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.29
      TPR_12  50 nLgrlyralgryeeAlelleealaia 75 
                   + +y + ++ + A++ll e+l +a
  KIR65643.1 141 LAALTY-EGDDRRRAHALLAETLGLA 165
                 344444.6668888888888887665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.9
      TPR_12   9 laavlrrlgrydeAl 23 
                 l +++r  g++d A 
  KIR65643.1 205 LCQLHRDSGDWDTAT 219
                 556677777777774 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.7
      TPR_12  26 lekaleiarrllGpdhpltattlrnLgr 53 
                 +e+a+ +ar + G++    a+ + +L++
  KIR65643.1 249 FEAAYVAAR-A-GEEG--RAWRYWDLAD 272
                 555555553.3.4555..8888888887 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 7.8e-06
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 p +p  a+ l+  +r+++a++++  A+e+l++a+++a+
  KIR65643.1 324 PSRPRRARHLIEVARAHLARNDTGSAVEALRQAYDAAP 361
                 668999****************************9986 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.6       0.3   1.3e+03       2      13 ..     153     164 ..     150     169 .. 0.83
   2 ?   -2.3   0.0       2.5   1.1e+04      10      19 ..     188     197 ..     187     198 .. 0.82
   3 ?    9.8   0.1    0.0003       1.3       1      22 [.     199     220 ..     199     222 .. 0.91
   4 ?   -1.6   1.5       1.4   6.3e+03       3      16 ..     247     260 ..     245     266 .. 0.76
   5 ?   -1.6   0.2       1.4   6.4e+03      11      24 ..     302     315 ..     296     317 .. 0.73
   6 ?    7.0   1.7    0.0025        11       3      26 .]     332     355 ..     330     355 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.3
       TPR_4   2 rallaLAralla 13 
                 ra+++LA++l +
  KIR65643.1 153 RAHALLAETLGL 164
                 799999998865 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.5
       TPR_4  10 allalGdlde 19 
                 a+++ Gd+++
  KIR65643.1 188 AAQESGDPEA 197
                 78899**986 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0003
       TPR_4   1 arallaLArallalGdldeAra 22 
                 ara ++L++++ + Gd+d+A +
  KIR65643.1 199 ARAGWFLCQLHRDSGDWDTATT 220
                 7999***************966 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.4
       TPR_4   3 allaLArallalGd 16 
                 ++   A +++++G+
  KIR65643.1 247 LHFEAAYVAARAGE 260
                 56778999999997 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 1.4
       TPR_4  11 llalGdldeArall 24 
                 + +l  + eA++ +
  KIR65643.1 302 AVELQKPGEALRQA 315
                 55677788999987 PP

  == domain 6  score: 7.0 bits;  conditional E-value: 0.0025
       TPR_4   3 allaLArallalGdldeAraller 26 
                 +l+  Ara+la+ d   A ++l++
  KIR65643.1 332 HLIEVARAHLARNDTGSAVEALRQ 355
                 556669****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3094.37
//
Query:       KIR65644.1  [L=399]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-11   42.7   3.5    5.2e-11   42.7   3.5    4.5  4  HTH_31      Helix-turn-helix domain
    6.8e-05   22.8   0.0    0.00013   21.9   0.0    1.5  1  HTH_19      Helix-turn-helix domain
    0.00016   21.6   0.0    0.00043   20.3   0.0    1.8  1  HTH_3       Helix-turn-helix
  ------ inclusion threshold ------
      0.017   15.1   0.0      0.062   13.3   0.0    2.0  2  KorB        KorB domain
      0.018   14.8   0.3      0.077   12.8   0.2    2.2  1  HTH_23      Homeodomain-like domain
      0.023   15.5   2.8      0.023   15.5   2.8    7.2  8  TPR_14      Tetratricopeptide repeat
      0.025   14.1   0.0       0.52    9.9   0.1    2.4  2  Sigma70_r4  Sigma-70, region 4
      0.057   13.7   0.9      0.057   13.7   0.9    4.1  4  TPR_12      Tetratricopeptide repeat
      0.071   12.9   0.1       0.37   10.6   0.0    2.1  2  HTH_38      Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   3.5   2.6e-14   5.2e-11       2      59 ..       8      65 ..       7      69 .. 0.94
   2 ?   -1.3   0.2       1.4   2.9e+03      48      61 ..     156     169 ..     150     190 .. 0.75
   3 ?  -15.2  19.2         9   1.8e+04      14      46 ..     294     325 ..     202     351 .. 0.57
   4 ?   -2.6   0.2       3.7   7.4e+03      43      43 ..     369     369 ..     353     392 .. 0.56

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 2.6e-14
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpa 59
                 G++++++R r+G++q+ +A+rlg s+s++ ++E+G r + + ++ + +a +l+ d +
  KIR65644.1  8 AGRRVAQWRVRRGMTQQMLADRLGRSKSWVDKVERGVRALDRVSTFRDIAVVLRIDAS 65
                69***************************************************99865 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.4
      HTH_31  48 ealaralgldpaer 61 
                 +al++a++++ +++
  KIR65644.1 156 AALVEAYRVTASLL 169
                 56677777765543 PP

  == domain 3  score: -15.2 bits;  conditional E-value: 9
      HTH_31  14 GLsqeevAerlgvsestlsrlEqGrrgrpspav 46 
                  + ++++A  lg  ++ + + E + r r  +++
  KIR65644.1 294 DVARAAAAVELGAARDAVAWHEKAVR-RNAWRW 325
                 55678888888888888888888777.454443 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 3.7
      HTH_31  43 s 43 
                 +
  KIR65644.1 369 R 369
                 3 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   6.7e-08   0.00013       1      60 [.       9      68 ..       9      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 6.7e-08
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aelllkiaealgidleyll 60
                G+r+ + R  +g+tq++la+rlg s+s   + E g +  ++  +++++ia  l id+  ll
  KIR65644.1  9 GRRVAQWRVRRGMTQQMLADRLGRSKSWVDKVERGVR-ALDrVSTFRDIAVVLRIDASVLL 68
                9**********************************99.77779999**9999988887776 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.1e-07   0.00043       2      36 ..      13      47 ..      12      67 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.1e-07
                HHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCS CS
       HTH_3  2 kelRkqlglsqeeLAeklGvsrstisriEnGernP 36
                +++R  +g++q++LA++lG s+s + + E+G r+ 
  KIR65644.1 13 AQWRVRRGMTQQMLADRLGRSKSWVDKVERGVRAL 47
                689****************************7765 PP

>> KorB  KorB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.1e-05     0.062       3      22 ..      20      39 ..      18      88 .. 0.81
   2 ?   -2.9   0.0       3.7   7.3e+03      10      29 ..     110     132 ..     110     139 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
        KorB  3 gvkqadIAkaLGksksfvsl 22
                g++q+  A++LG+sks+v  
  KIR65644.1 20 GMTQQMLADRLGRSKSWVDK 39
                99***************965 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.7
        KorB  10 AkaLGks..ksfvs.lylklldv 29 
                 A++L ++   ++v+ +++ + +v
  KIR65644.1 110 ADRLARDvaHAWVTfQHARYPQV 132
                 77888873357998456666665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   3.9e-05     0.077      12      39 ..      15      42 ..      10      51 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.9e-05
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlk 39
                + +++G++++  A++Lg+s+++v+++ +
  KIR65644.1 15 WRVRRGMTQQMLADRLGRSKSWVDKVER 42
                44566*******************9865 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.6   7.2e+03      34      42 ..      23      31 ..       2      60 .. 0.61
   2 ?    1.6   0.3      0.33   6.6e+02      22      39 ..     141     158 ..     138     163 .. 0.79
   3 ?    0.0   0.1       1.1   2.1e+03       2      37 ..     160     195 ..     159     201 .. 0.80
   4 ?    4.3   1.6     0.047        93       5      32 ..     201     229 ..     196     236 .. 0.79
   5 ?    1.1   2.1      0.48   9.5e+02       3      27 ..     246     270 ..     244     280 .. 0.82
   6 ?    2.8   3.0      0.13   2.7e+02       6      33 ..     296     323 ..     291     336 .. 0.81
   7 ?   15.5   2.8   1.1e-05     0.023       4      36 ..     335     367 ..     331     379 .. 0.82
   8 ?   -0.7   0.1       1.9   3.7e+03      20      42 ..     371     393 ..     367     394 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.6
      TPR_14 34 daeawllla 42
                ++ +  +l+
  KIR65644.1 23 QQMLADRLG 31
                444443333 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.33
      TPR_14  22 allrralalaPddaeawl 39 
                 a ++ra a+aPd+ +a l
  KIR65644.1 141 ATAQRAHADAPDSGRAAL 158
                 6789999999*9988765 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 1.1
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaea 37 
                 ea++  a++l  lG+ +    +++ra+a+  +d+++
  KIR65644.1 160 EAYRVTASLLVKLGEGELGWLAADRAVAASAGDPVL 195
                 788888999999999888888899999998888776 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.047
      TPR_14   5 lalaeallalGdpdeAia.llrralalaP 32 
                  +l++al+a+G+ ++A+   l +a + aP
  KIR65644.1 201 VQLGQALRASGRARAARSvSLAAAYRIAP 229
                 689************99877777777776 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.48
      TPR_14   3 allalaeallalGdpdeAiallrra 27 
                 +l ++a a ++ Gd+++ ++ll++a
  KIR65644.1 246 LLVQAALAAARDGDHRATADLLDEA 270
                 566889999999****999999998 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.13
      TPR_14   6 alaeallalGdpdeAiallrralalaPd 33 
                 a+a+a  +lG  ++A+a  ++a++++ +
  KIR65644.1 296 ARAAAAVELGAARDAVAWHEKAVRRNAW 323
                 7899999***************998754 PP

  == domain 7  score: 15.5 bits;  conditional E-value: 1.1e-05
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddae 36 
                 ll++a+a+l+ Gdp++A ++l +a ++aP++++
  KIR65644.1 335 LLDAARAYLRTGDPRGAGRVLLDAERTAPAELR 367
                 689**************************8855 PP

  == domain 8  score: -0.7 bits;  conditional E-value: 1.9
      TPR_14  20 AiallrralalaPddaeawllla 42 
                 A++   + + +aP  ++++ +la
  KIR65644.1 371 AARQVIAQVTRAPHAPATLVQLA 393
                 55555555667999999998887 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00026      0.52      10      42 ..      10      42 ..       7      50 .. 0.83
   2 ?    1.4   0.0      0.11   2.3e+02       8      33 ..     371     399 .]     369     399 .] 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00026
                HHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4 10 revlelrfgeglTleEIgerlgiSrerVrqiek 42
                r+v + r  +g+T++ +++rlg S++ V   e+
  KIR65644.1 10 RRVAQWRVRRGMTQQMLADRLGRSKSWVDKVER 42
                6666788899****************9977665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
                 HHHHHHHHHH...TTT--HHHHHHHHTS- CS
  Sigma70_r4   8 rerevlelrf...geglTleEIgerlgiS 33 
                   r+v+ ++      + Tl +++  lg++
  KIR65644.1 371 AARQVIAQVTrapHAPATLVQLALSLGVT 399
                 569999999999999***********997 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       2.7   5.5e+03      34      59 ..     148     173 ..     139     176 .. 0.62
   2 ?    3.4   0.7     0.048        96      42      66 ..     194     218 ..     180     224 .. 0.76
   3 ?    5.6   0.8    0.0096        19      27      60 ..     249     279 ..     243     288 .. 0.69
   4 ?   13.7   0.9   2.9e-05     0.057       8      68 ..     296     355 ..     291     364 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.7
      TPR_12  34 rrllGpdhpltattlrnLgrlyralg 59 
                   +++  ++++++++r  + l+ +lg
  KIR65644.1 148 ADAPDSGRAALVEAYRVTASLLVKLG 173
                 34466667777778877777777766 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.048
      TPR_12  42 pltattlrnLgrlyralgryeeAle 66 
                  l+a++   Lg+++ra+gr ++A++
  KIR65644.1 194 VLVAAACVQLGQALRASGRARAARS 218
                 5677777889999999999999875 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0096
      TPR_12  27 ekaleiarrllGpdhpltattlrnLgrlyralgr 60 
                 ++al++a    ++dh +ta  l   g+l  + g+
  KIR65644.1 249 QAALAAA---RDGDHRATADLLDEAGDLAARVGD 279
                 4455555...457888888888888888776665 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 2.9e-05
      TPR_12   8 nlaavlrrlgrydeAlellekaleia.rrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                  +aa+  +lg   +A +++eka+++   r+l p+h   a+ l + +r+y+++g+++ A + l
  KIR65644.1 296 ARAAAAVELGAARDAVAWHEKAVRRNaWRWLPPEH--RAAHLLDAARAYLRTGDPRGAGRVL 355
                 5678888899999**********9998899*****..*****************99885555 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00018      0.37      14      35 ..      13      35 ..      10      40 .. 0.83
   2 ?   -1.4   0.0         1     2e+03      22      35 ..      52      65 ..      46      67 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
      HTH_38 14 erll.aeGlslreIArrLgrsps 35
                ++++  +G+++   A rLgrs+s
  KIR65644.1 13 AQWRvRRGMTQQMLADRLGRSKS 35
                5665489**************98 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1
      HTH_38 22 slreIArrLgrsps 35
                ++r+IA  L  + s
  KIR65644.1 52 TFRDIAVVLRIDAS 65
                89****99887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2933.39
//
Query:       KIR65645.1  [L=113]
Description: hypothetical protein TK50_09780 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.093   12.9   0.1       0.13   12.4   0.1    1.3  1  DUF4081   Domain of unknown function (DUF4081)


Domain annotation for each model (and alignments):
>> DUF4081  Domain of unknown function (DUF4081)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   7.4e-06      0.13      13      73 ..      24      84 ..      17     106 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.4e-06
     DUF4081 13 ealcfaGanlvPvaadaealrafAdralrrgrrcsSivGpaeavlaLwerLeeawgparev 73
                 a++f+G+  vP++ +++    fA    ++g  ++ ivG    +  L   L+ +   ar v
  KIR65645.1 24 FAAVFVGSAGVPTNPNQDCSVIFACLTPQEGFVLAAIVGAPVLAAMLLTTLAITALLARRV 84
                599*********************************************9999777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 818.30
//
Query:       KIR65646.1  [L=475]
Description: FAD-dependent oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-95  318.2   0.0    8.7e-95  317.9   0.0    1.1  1  FAD_binding_3   FAD binding domain
    8.9e-07   28.8   5.0     0.0019   17.9   0.2    2.9  4  DAO             FAD dependent oxidoreductase
    2.7e-06   26.4   0.1    0.00011   21.1   0.0    2.2  2  HI0933_like     HI0933-like protein
    1.4e-05   24.5   0.1     0.0055   16.0   0.0    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    6.1e-05   23.5   0.1     0.0048   17.4   0.1    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00029   21.0   0.1     0.0013   18.9   0.1    2.2  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0003   20.0   0.4     0.0021   17.2   0.1    2.2  2  FAD_binding_2   FAD binding domain
     0.0012   17.8   0.0       0.52    9.1   0.0    2.1  2  Trp_halogenase  Tryptophan halogenase
  ------ inclusion threshold ------
      0.014   14.5   0.1      0.025   13.7   0.1    1.5  1  Lycopene_cycl   Lycopene cyclase protein
      0.017   14.4   0.1      0.027   13.7   0.1    1.3  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.046   13.8   0.1       0.14   12.2   0.1    1.9  1  DUF2384         Protein of unknown function (DUF2384)


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.9   0.0   5.3e-98   8.7e-95       3     349 .]       3     335 ..       1     335 [. 0.94

  Alignments for each domain:
  == domain 1  score: 317.9 bits;  conditional E-value: 5.3e-98
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHHCHHCST- CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradlelessper 98 
                    dV++VG+Gp+Glmla +L+ +Gv ++l+ek ++ ++  ra gl+ r++e+++q+Gl +r+la g++  l g++   +    + +++ l+  s + +
     KIR65646.1   3 DVIVVGGGPTGLMLAGELRLHGVHTLLLEKEAEPTPVVRALGLHARSIEIMDQRGLLERFLALGQQYPLGGFFAAIP----KPPPTGLD--SAHAY 92 
                    8****************************************************************************....89999999..***** PP

                    CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEEEEEEC CS
  FAD_binding_3  99 vtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvldvlfda 194
                    v  +pqt ++r+L+eha+e g+++r++ e+++l qd+ gvtae++d +     ++r++YlvG+DGgrStvrk lgi f+ge++ ++  + ++  +a
     KIR65646.1  93 VLGIPQTTTDRLLAEHAVELGVEIRRGGELVGLSQDDHGVTAELTDGT-----RLRSRYLVGCDGGRSTVRKLLGIGFPGESSRVDTLLGEMRLTA 183
                    *********************************************994.....9****************************99888887887777 PP

                    -SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEEEEEEEEEEEEESSSEETTEEE-G CS
  FAD_binding_3 195 dlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivgektldveieevsawtvaqrvaekyrkgrvflaG 290
                      + +++ +  +++++ r+   +Pl +    + v+v+a+  +e+r+ + t +evk++lr+  g+++  +++++ s+++ ++r+ae+yr grv+laG
     KIR65646.1 184 SPETLAAVSAEVRKTQLRF-GAMPLGD--GVYRVVVPAEGVAEDRRIPPTLDEVKRQLRAYGGTDFGAHSPRWLSRFGDSTRLAERYRVGRVLLAG 276
                    6665555567777777775.7888888..4456778888888999*************************************************** PP

                    GGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 291 DAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvdfa 349
                    DAaH+hpPtgGqGlN++iqDa+nL+wkLaa + G+A + lLd+Ye+err+va++v+d++
     KIR65646.1 277 DAAHVHPPTGGQGLNLGIQDAFNLGWKLAAQVDGWAPPGLLDSYETERRPVAADVLDNT 335
                    *******************************************************9985 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   1.1e-06    0.0019       1      32 [.       3      36 ..       3      47 .. 0.94
   2 !   12.2   0.1   5.9e-05     0.096     152     232 ..     105     188 ..      84     244 .. 0.65
   3 ?   -1.6   0.0      0.96   1.6e+03     106     146 ..     241     284 ..     215     290 .. 0.64
   4 ?   -3.6   0.0       3.8   6.2e+03      76     117 ..     409     447 ..     381     461 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-06
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSST CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdia 32
                dv+++GGG +Gl  A eL  +g  ++llek+ ++
  KIR65646.1  3 DVIVVGGGPTGLMLAGELRLHGvhTLLLEKEAEP 36
                8*****************9999********9765 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5.9e-05
                 HHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECTEEE.EEEEEEEE--GGGHH..HHHTTCTT....TSEEEEEEEEEEEE.EECCT CS
         DAO 152 laraaealGveilegtevtgleeedgkvwgve.rttpgen.daadavVnaaGawsd..llgllkel....dlpispvrgqvlvl.kplse 232
                 la+ a +lGvei++g e +gl+++d +   v  + t+g++ ++ +++V + G  s+  +l  l++       ++  + g++  + +p ++
  KIR65646.1 105 LAEHAVELGVEIRRGGELVGLSQDDHG---VTaELTDGTRlRS-RYLVGCDGGRSTvrKL--LGIGfpgeSSRVDTLLGEMRLTaSPETL 188
                 7777*****************876533...3334667988778.99******99975422..2221333246667777777555233333 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.96
                 H..HHTTTTE.EEEEH..HHHHHHSTTST.TTSEEEEETTEEEEEHH CS
         DAO 106 l..leaglda.ellda..eevrelepalp.gllgalfypdtgqvdpa 146
                    +++g+ + ++l++  + +r  e   + ++   l+  d+++v+p 
  KIR65646.1 241 YggTDFGAHSpRWLSRfgDSTRLAE---RyRVGRVLLAGDAAHVHPP 284
                 2455567755589999644344333...2244455778889999995 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 3.8
                 SSTTSEEEEEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEE CS
         DAO  76 gididyrrtGllslaadeeelealdkllallleagldaelld 117
                 g  + ++rtG ls+a      +++d  ++  +e++++a ll+
  KIR65646.1 409 GRGLLLDRTGELSVAGW---ADRVDHVADGSEELDVPAVLLR 447
                 44466677777777754...3444332222234444444444 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   6.6e-08   0.00011       1      35 [.       2      36 ..       2      44 .. 0.92
   2 ?    3.1   0.0     0.019        32     114     167 ..     104     156 ..      99     160 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 6.6e-08
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVlllekakkl 35
                 +dviv+GgG+ Glm A +++ +g ++lllek+ ++
   KIR65646.1  2 FDVIVVGGGPTGLMLAGELRLHGVHTLLLEKEAEP 36
                 59*****************************9775 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.019
                  HHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS- CS
  HI0933_like 114 allkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSi 167
                  +l +++ e gv++r   e+ +++++++g ++ +++++++l++++lv   GG S 
   KIR65646.1 104 LLAEHAVELGVEIRRGGELVGLSQDDHG-VTAELTDGTRLRSRYLVGCDGGRST 156
                  67788899**************988888.888888****************996 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.4e-06    0.0055       2     177 ..       3      36 ..       2      60 .. 0.59
   2 !    6.4   0.0    0.0028       4.5     187     240 ..     103     156 ..      90     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.4e-06
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkkegdeekia 99 
                  dv                                                                                                
   KIR65646.1   3 DV------------------------------------------------------------------------------------------------ 4  
                  44................................................................................................ PP

                  ESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 100 ydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrl 177
                                                                +vvGgG++G+ lA++l+  g+++ l+e   ++
   KIR65646.1   5 ----------------------------------------------IVVGGGPTGLMLAGELRLHGVHTLLLEKEAEP 36 
                  ..............................................55555555555555555555555555554443 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0028
                  HHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 187 aaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrps 240
                  + l+e+  + Gve++ g + + + ++++ ++ +l+dg+++  +++v + G r  
   KIR65646.1 103 RLLAEHAVELGVEIRRGGELVGLSQDDHGVTAELTDGTRLRSRYLVGCDGGRST 156
                  4567777888************************************99987755 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1     3e-06    0.0048       2      35 ..       4      37 ..       3      50 .. 0.89
   2 ?    3.7   0.0     0.058        95      42      74 ..     101     133 ..      91     139 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3e-06
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                v+vvGgG +gl+lAg+l+ +g ++ ++e + ++ 
  KIR65646.1  4 VIVVGGGPTGLMLAGELRLHGVHTLLLEKEAEPT 37
                89**********************9999988876 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.058
                 HHHHHHHHHHHTTEEEECSEEEEEEEEETTSEE CS
   Pyr_redox  42 askilqeklekngievllntkveeiegsedgve 74 
                 + ++l+e+  ++g+e++ + +++ + +++ gv+
  KIR65646.1 101 TDRLLAEHAVELGVEIRRGGELVGLSQDDHGVT 133
                 5678899999*****************999944 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1     8e-07    0.0013       1      30 [.       6      35 ..       6      59 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 8e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr 30
                   +vG+G +Gl +A +L+ +g++ lllek   
     KIR65646.1  6 VVGGGPTGLMLAGELRLHGVHTLLLEKEAE 35
                   8**************************865 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.3e-06    0.0021       1      33 [.       3      35 ..       3      44 .. 0.96
   2 ?    0.4   0.0      0.17   2.7e+02     109     132 ..     237     262 ..     174     307 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.3e-06
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   DviV+G+G  GL+ A e++ +G  ++++eke e
     KIR65646.1  3 DVIVVGGGPTGLMLAGELRLHGVHTLLLEKEAE 35
                   9*****************************975 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.17
                    S..SB-EEE-TT-SSTEEEE-.STT- CS
  FAD_binding_2 109 g..pvdvrelGglsatartlhdaada 132
                    +  +++++++G++s+++++ ++ +++
     KIR65646.1 237 QlrAYGGTDFGAHSPRWLSRFGDSTR 262
                    1458999*********7666644443 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0019       3.1       1      38 [.       3      37 ..       3      42 .. 0.86
   2 !    9.1   0.0   0.00032      0.52     143     213 ..      88     157 ..      74     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0019
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS-- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeigt 38
                    ++++vGGG+ G + A  l+ ++   ++ +l+e+e+ +t
      KIR65646.1  3 DVIVVGGGPTGLMLAGELRLHG---VHTLLLEKEAEPT 37
                    699***************9888...8888999887766 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00032
                     B-S--EEEE-HHHHHHHHHHHHHHCT-EEEE-.-EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG-II CS
  Trp_halogenase 143 salsyAyhldaalyakfLrrvaearGvtrveg.kvvevqldedgrveslrledgreveadlfiDcsGfrgll 213
                     sa +y + + +   +++L ++a + Gv++++g + v   +d++g  +  +l+dg+++  +  + c G r+ +
      KIR65646.1  88 SAHAYVLGIPQTTTDRLLAEHAVELGVEIRRGgELVGLSQDDHGVTA--ELTDGTRLRSRYLVGCDGGRSTV 157
                     555666667788899*************8875267677776666655..5678***************9975 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.5e-05     0.025       1      35 [.       3      35 ..       3      68 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasps 35
                   Dv+v+G+Gp gl lA +l     g++ +l+e  ++
     KIR65646.1  3 DVIVVGGGPTGLMLAGEL--RLHGVHTLLLEKEAE 35
                   9*****************..889999999986655 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.7e-05     0.027       1      30 [.       5      33 ..       5      49 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 i++G+GP Gl  a el+ +g+ + l lEk+
   KIR65646.1  5 IVVGGGPTGLMLAGELRLHGV-HTLLLEKE 33
                 89*******************.689***98 PP

>> DUF2384  Protein of unknown function (DUF2384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   8.8e-05      0.14      29      46 ..     339     356 ..     324     358 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.8e-05
     DUF2384  29 ldlldteaGarlVedyLd 46 
                 ++l++te+Ga++V+++L 
  KIR65646.1 339 MELMSTEPGAQAVRRLLS 356
                 89**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3394.06
//
Query:       KIR65647.1  [L=455]
Description: poly(3-hydroxybutyrate) depolymerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-29  102.5  14.4    2.8e-29  102.0  13.5    1.7  2  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    1.9e-25   89.4  28.8    5.8e-12   46.2   4.5    4.5  4  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
     0.0013   18.2   0.9     0.0013   18.2   0.9    1.8  2  Peptidase_S9     Prolyl oligopeptidase family
  ------ inclusion threshold ------
        1.2    9.5   5.8         33    4.9   0.4    3.3  3  ET               ET module


Domain annotation for each model (and alignments):
>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.1     5e+03       6      19 ..     151     164 ..     148     168 .. 0.66
   2 !  102.0  13.5   6.2e-33   2.8e-29       6     127 .]     333     452 ..     329     452 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
                     EETTTGEEEEETTC CS
  Ricin_B_lectin   6 rnvasgkCLdvege 19 
                     r+ + g+C+d++++
      KIR65647.1 151 RQIEAGLCVDTTQR 164
                     45566777777654 PP

  == domain 2  score: 102.0 bits;  conditional E-value: 6.2e-33
                     EETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEETTSEEEETT.TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTTEEEETTT CS
  Ricin_B_lectin   6 rnvasgkCLdvegeska.gapvglydChgskgkQlwtltkdgeirskaqselCldvs..staegakvvlakChkgkgnqrWefdkdgtqirhkks 97 
                     ++ +sg C+dv+++s++ g++ +l+dC+g+++ Q wt+t+ +++++   + +Cld+s  +t++g++v++++Ch g++nq+W+++ +gt + +++s
      KIR65647.1 333 VGGQSGRCVDVPNGSTTnGTQTQLWDCTGAAA-QSWTYTAGRQLQVY--GTKCLDASgaGTSNGTQVIIWDCH-GGTNQQWNVNANGT-LTNAQS 422
                     56689*************************88.*************5..9***********************.999***********.****** PP

                     SEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  98 gkCLdvkgasksne.klilkkcdsgsdsQkW 127
                     g+CLd++ a+++n+ +lil++c +g+++Q+W
      KIR65647.1 423 GLCLDANAAGTANGtRLILWSC-NGQQNQQW 452
                     ********************99.******** PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.17   7.8e+02      47      76 ..     160     193 ..      92     206 .. 0.72
   2 !   46.2   4.5   1.3e-15   5.8e-12      17      89 .]     332     399 ..     323     399 .. 0.89
   3 !   30.0   1.8   1.5e-10   6.5e-07      23      58 ..     380     415 ..     374     418 .. 0.90
   4 !   40.6   7.1     7e-14   3.1e-10       1      54 [.     405     454 ..     405     455 .] 0.93

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.17
                      -GGCEEEE.ECCESS.EEEEEETTTT..EEEEEC CS
  RicinB_lectin_2  47 aanqqWrl.edtgdg.tyrivnkasg..kvLdva 76 
                      ++ q++ +  + g+g ty i ++++   +++ v+
       KIR65647.1 160 DTTQRFAMgFSYGGGmTYAIACARATlfRAVAVY 193
                      5677777766666667888888776645566666 PP

  == domain 2  score: 46.2 bits;  conditional E-value: 1.3e-15
                      EECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  17 iknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      ++  +sg+++dv++gst+ng+++q w+c+gaa+q W+ +       +++   + k+Ld +g++t+nGt+v++w
       KIR65647.1 332 VVGGQSGRCVDVPNGSTTNGTQTQLWDCTGAAAQSWTYT----AGRQLQVYGT-KCLDASGAGTSNGTQVIIW 399
                      56678********************************73....2468888666.5*****************9 PP

  == domain 3  score: 30.0 bits;  conditional E-value: 1.5e-10
                      SEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCE CS
  RicinB_lectin_2  23 gkvLdvaggstanganvqqwtcsgaanqqWrledtg 58 
                      +k+Ld++g++t+ng++v  w+c+g++nqqW ++ +g
       KIR65647.1 380 TKCLDASGAGTSNGTQVIIWDCHGGTNQQWNVNANG 415
                      79*****************************97766 PP

  == domain 4  score: 40.6 bits;  conditional E-value: 7e-14
                      CCGEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEE CS
  RicinB_lectin_2   1 anQqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrl 54 
                      +nQqW++    +   t++n++sg++Ld+++++tang+++  w+c+g++nqqW l
       KIR65647.1 405 TNQQWNV----NANGTLTNAQSGLCLDANAAGTANGTRLILWSCNGQQNQQWSL 454
                      69*****....4445*************************************87 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.9   2.9e-07    0.0013      56      97 ..     153     195 ..     130     197 .. 0.84
   2 ?   -3.5   0.1       1.3   5.8e+03      12      35 ..     391     414 ..     390     422 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.9e-07
                   HHTT.S--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE CS
  Peptidase_S9  56 akeg.yvdserlaitGgSyGGyltgaalnqrpdlFkaavaevp 97 
                   ++ g  vd+++ +++G SyGG +t a++  r  lF+a++  ++
    KIR65647.1 153 IEAGlCVDTTQRFAMGFSYGGGMTYAIACARATLFRAVAVYAG 195
                   4556699******************************998776 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.3
                   CCT-EEEEE--TTSSTTHCHHHHT CS
  Peptidase_S9  12 drGyvvvvanirGsggyGeafhda 35 
                   ++G  v++ + +G++++ ++ + +
    KIR65647.1 391 SNGTQVIIWDCHGGTNQQWNVNAN 414
                   678889999999999766555544 PP

>> ET  ET module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2     0.012        56      21      44 ..     337     360 ..     324     366 .. 0.88
   2 ?    2.3   0.9     0.049   2.2e+02       4      44 ..     361     402 ..     359     408 .. 0.85
   3 ?    4.9   0.4    0.0073        33       2      46 ..     402     447 ..     401     451 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.012
          ET  21 dGeCasvsltttvngqnvtlytCd 44 
                 +G+C  v   +t ng++++l+ C+
  KIR65647.1 337 SGRCVDVPNGSTTNGTQTQLWDCT 360
                 59******99*************7 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.049
          ET   4 GlyvnekaistgaevaCdGe.CasvsltttvngqnvtlytCd 44 
                 G  +++ ++++g + +  G+ C  +s  +t ng++v ++ C 
  KIR65647.1 361 GAAAQSWTYTAGRQLQVYGTkCLDASGAGTSNGTQVIIWDCH 402
                 666777788889888889977********************6 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0073
          ET   2 yvGlyvnekaistgaevaCd.GeCasvsltttvngqnvtlytCdpt 46 
                 + G   + +  ++g+ ++ + G C  ++  +t ng+ + l++C  +
  KIR65647.1 402 HGGTNQQWNVNANGTLTNAQsGLCLDANAAGTANGTRLILWSCNGQ 447
                 555555555556666666666**********************866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3243.65
//
Query:       KIR65648.1  [L=115]
Description: hypothetical protein TK50_09810 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 841.41
//
Query:       KIR65649.1  [L=529]
Description: aspartate ammonia-lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-55  187.5   0.0    3.2e-55  187.1   0.0    1.1  1  DUF4139   Domain of unknown function (DUF4139)
    3.8e-23   81.8  11.5    5.9e-23   81.2   0.2    4.2  5  DUF4140   N-terminal domain of unknown function (DUF4140)
    0.00047   20.4   1.6     0.0022   18.2   0.2    2.8  2  DUF11     Domain of unknown function DUF11


Domain annotation for each model (and alignments):
>> DUF4139  Domain of unknown function (DUF4139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.1   0.0   5.3e-59   3.2e-55       1     207 [.     200     519 ..     200     520 .. 0.99

  Alignments for each domain:
  == domain 1  score: 187.1 bits;  conditional E-value: 5.3e-59
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
     DUF4139   1 lkvsyvvseagWsPlYdlrldtakeevqltykAkvyQktgeDWknvnLtLstakpnrggsppelspwylrvvn.......................... 73 
                 l+++y+v+ a+W+P+Ydlrl +++  v++t+++ v+Q tgeDW ++ L Lsta+p++++  pelspwyl+ v+                          
  KIR65649.1 200 LELTYLVDGARWQPSYDLRLVDDT--VTVTWFGLVSQDTGEDWPECVLQLSTARPAAAAGVPELSPWYLDRVRplprpampaasfgavpapappggpaf 296
                 79*******************998..9********************************************99************************** PP

                 .......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................... RF
     DUF4139  74 .......................evteggtsvtfeipkkvsipsdgeetkvt............................................... 102
                                        +v++g  ++t++ +++v +p+dg++ + t                                               
  KIR65649.1 297 evaaaggaaragaprpkvhesvaTVEQGVSAATYRPSRPVAVPADGSAYRATiavlelparldhvtvpvraaeahlratvrntsahtllpgpaavfhga 395
                 *************************************************************************************************** PP

                 .....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     DUF4139 103 .....................GvdpkikverkllkkkksetgligsqrrveyaytitvkNtksepvtlkvedqvPvSrdeeikveledaepskaevdkd 180
                                      Gvd++++verkl ++++  +  +gs+rr++++y+itv N++++p+t++v+dq+PvSrde ++v+ +++ p++ae+++ 
  KIR65649.1 396 dfvaatrlptwapgeetelalGVDDRVRVERKLGRRADT-RATLGSTRRRDVEYRITVANHTPRPATVEVRDQLPVSRDEAVVVREATIAPAPAERTEL 493
                 **************************************9.9********************************************9******9999998 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     DUF4139 181 tgilewklklapgekkkiefsyevkyp 207
                  g+l+w l l+pg++ +i+++++v++ 
  KIR65649.1 494 -GELTWRLRLEPGDSGEITMGFRVELA 519
                 .***********************976 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.2   9.8e-27   5.9e-23       1      98 []      10     107 ..      10     107 .. 0.97
   2 ?    3.9   0.4     0.013        75      66      91 ..     149     174 ..     122     180 .. 0.62
   3 ?    1.4   0.0     0.075   4.5e+02      23      48 ..     347     375 ..     314     391 .. 0.75
   4 ?   -1.9   0.2      0.77   4.6e+03      45      79 ..     439     473 ..     418     482 .. 0.64
   5 ?   -0.9   0.1      0.37   2.2e+03       4      24 ..     471     492 ..     468     501 .. 0.76

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 9.8e-27
     DUF4140   1 VtvypdrAevtreikvelkaGtnevtiegLpptldedSlrVegagaatildvqvervpnreaeeeelkalraeleeledelaaledelaaaearlafl 98 
                 VtvypdrA+vtr+++ +l+aG+++v+i  Lp  l  dSlrV g+gaat+l+v+v++  + ++++ ++++l+++ +el dela ++d+ a+ e+r +fl
  KIR65649.1  10 VTVYPDRARVTRRGSARLTAGEHRVRIAPLPLGLHRDSLRVGGRGAATVLGVDVTTWRQARSADGQVRELEERSRELADELAGVDDAYAVEEQRGQFL 107
                 9*******************************************************9998999889***************************99987 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.013
     DUF4140  66 elkalraeleeledelaaledelaaa 91 
                 + ++l ++ +el+++laa++++l+aa
  KIR65649.1 149 RRRELARRRTELTEDLAAVRRQLEAA 174
                 34556666666666666666666655 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.075
     DUF4140  23 nevtiegLpptldedSlrVegaga...at 48 
                  ++ + +Lp+ ld  ++ V++a+a   at
  KIR65649.1 347 ATIAVLELPARLDHVTVPVRAAEAhlrAT 375
                 56889999999999999999775432344 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.77
     DUF4140  45 gaatildvqvervpnreaeeeelkalraeleeled 79 
                 g+ +  dv+++ +  + +++++  ++r++l   +d
  KIR65649.1 439 GSTRRRDVEYRITVANHTPRPATVEVRDQLPVSRD 473
                 55556667777666666666666777776655554 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.37
     DUF4140   4 ypdrAevtreikv.elkaGtne 24 
                   d A v+re+++ + +a ++e
  KIR65649.1 471 SRDEAVVVREATIaPAPAERTE 492
                 568999*****99666666555 PP

>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.21   1.3e+03      28      28 ..     382     382 ..     325     433 .. 0.63
   2 !   18.2   0.2   3.7e-07    0.0022      10      78 ..     436     516 ..     424     523 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.21
       DUF11  28 a 28 
                  
  KIR65649.1 382 H 382
                 1 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 3.7e-07
       DUF11  10 vrpGd....tvtytltvtNtgpasangvvvtDtlP....aglayvsvsas......qgtasaltsvgsLeagesatlsftvrv 78 
                 ++ G      v+y +tv N  p++a +v v+D lP    +++   +++ +      +  ++ +++  +Le+g s  +++  rv
  KIR65649.1 436 ATLGStrrrDVEYRITVANHTPRPA-TVEVRDQLPvsrdEAVVVREATIApapaerTELGELTWR-LRLEPGDSGEITMGFRV 516
                 55555555579**************.*********977655554444444655544444445555.58899998887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 3941.96
//
Query:       KIR65650.1  [L=947]
Description: monovalent cation/H+ antiporter subunit A [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-58  196.9  17.1      4e-58  196.9  17.1    2.4  3  Proton_antipo_M  Proton-conducting membrane transporter
    5.9e-27   94.4  18.0    5.9e-27   94.4  18.0    7.8 10  MnhB             Domain related to MnhB subunit of Na+/H+ ant
      2e-20   72.7  10.1      2e-20   72.7  10.1    5.5  6  DUF4040          Domain of unknown function (DUF4040)
    3.2e-07   30.3   2.3    3.8e-07   30.1   0.0    2.5  2  Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), 
    0.00013   21.7   0.0    0.00013   21.7   0.0    4.3  2  Oxidored_q3      NADH-ubiquinone/plastoquinone oxidoreductase


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.9  17.1   1.1e-61     4e-58       1     293 []     125     412 ..     125     412 .. 0.94
   2 ?   -2.9   0.9      0.85     3e+03     121     159 ..     611     649 ..     607     653 .. 0.77
   3 ?   -3.3   0.3       1.1   4.1e+03      96     134 ..     880     910 ..     849     917 .. 0.59

  Alignments for each domain:
  == domain 1  score: 196.9 bits;  conditional E-value: 1.1e-61
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelskalelglnslelllllllllvgllv 94 
                      a+dLllly+++El+ + +ylLig   ++  s  A+  ++ +t +g l++L+g+l+l + tg     el+       +   l+ + ll+l g+l+
       KIR65650.1 125 ADDLLLLYVFWELTTIFSYLLIGHSTTRRASRWAAAQALTVTTFGGLAMLVGFLMLGRHTGGYRWSELAGG--GLPAGGYLVTAVLLVLTGALA 216
                      79******************************************************************999..77777788888899999**** PP

  Proton_antipo_M  95 KsaqvplhlWlpdayveaPtpvsall.AatlvkagvlllirlllllavssneisqlllilaiismllgslvalaqtdiKrllAySsishlGyml 187
                      Ksa++p++ Wlp+a ++aPtpvsa l Aa +vkagv+ll  l ++la  ++ ++ + ++ ++++ml+g+ +al+q d+K llAy ++s+lG+++
       KIR65650.1 217 KSAVLPFSGWLPQA-MAAPTPVSAYLhAAAMVKAGVYLLGLLAPVLA-TAGPWRPVTVTAGLLTMLVGGWAALRQCDLKLLLAYGTVSQLGLLT 308
                      **************.*************************9999999.9999****************************************** PP

  Proton_antipo_M 188 ialavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPptagFlskfliLeaavavsli 281
                      +al+++t  +  a  + l++halfka+lFl++g++ ++   trd+r+++gL  + P+la+v ++++ s+aGlPp+ gF++k ++L+a ++ +++
       KIR65650.1 309 VALGAGTPSAALAGTAMLFAHALFKAALFLVVGAIDHSA-GTRDLRELSGLGRRAPLLAAVGTLAAASMAGLPPLVGFVAKEAVLAAFTD-QPV 400
                      *****888888888888899************9986665.9********************************************87665.566 PP

  Proton_antipo_M 282 llvlavvasvlt 293
                      +l+ +v ++vlt
       KIR65650.1 401 VLAGLVAGTVLT 412
                      677777777776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.85
  Proton_antipo_M 121 Aatlvkagvlllirlllllavssneisqlllilaiisml 159
                      A++lv + +++ +++++l    + +++q+l+  a+i+++
       KIR65650.1 611 AMLLVGVTGYGTAMMFVLHGAPDLALTQFLVETATIAVF 649
                      888999999999977777667788888888888888877 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.1
  Proton_antipo_M  96 saqvplhlWlpdayveaPtpvsallAatlvkagvlllir 134
                      s  + l lWlp +     ++ s+++      +gv+l+++
       KIR65650.1 880 S--AKLDLWLPGV-GDFYVVTSLFF-----DIGVYLIVV 910
                      3..3467788877.33333333333.....666666654 PP

>> MnhB  Domain related to MnhB subunit of Na+/H+ antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   5.8       2.8   9.9e+03      35      57 ..     121     143 ..      65     180 .. 0.54
   2 ?   -5.5   9.0         5   1.8e+04      35      90 ..     121     182 ..     114     216 .. 0.62
   3 ?  -10.1  13.2         5   1.8e+04      37      37 ..     270     270 ..     190     349 .. 0.54
   4 ?   -0.8   1.6      0.51   1.8e+03      63      93 ..     358     391 ..     327     417 .. 0.51
   5 ?    2.1   0.6     0.063   2.3e+02      33      86 ..     406     468 ..     402     500 .. 0.53
   6 ?   -0.7   0.8      0.48   1.7e+03      34      86 ..     456     523 ..     452     571 .. 0.52
   7 ?   -1.5   0.7      0.83     3e+03      67      85 ..     609     627 ..     587     654 .. 0.38
   8 ?   -1.9   0.1       1.1   3.9e+03      66      84 ..     669     687 ..     641     724 .. 0.51
   9 ?   -1.0   0.2      0.58   2.1e+03      64      85 ..     727     748 ..     675     754 .. 0.73
  10 !   94.4  18.0   1.7e-30   5.9e-27       1     122 [.     791     913 ..     791     914 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.8
        MnhB  35 Glilaaalillylafgleelekl 57 
                 Gl+la  l+lly+  +l +  ++
  KIR65650.1 121 GLVLADDLLLLYVFWELTTIFSY 143
                 33333344444444444442222 PP

  == domain 2  score: -5.5 bits;  conditional E-value: 5
        MnhB  35 Glilaaalillylafgleelekll...rvkla.prileglglllavltgllglllg..flts 90 
                 Gl+la  l+lly+  +l +  ++l   +++++ + +++++ +l+++ +g l++l+g  +l  
  KIR65650.1 121 GLVLADDLLLLYVFWELTTIFSYLligHSTTRrASRWAAAQALTVTTFGGLAMLVGflMLGR 182
                 67778888888888888885555534422222577888888888888888899898543333 PP

  == domain 3  score: -10.1 bits;  conditional E-value: 5
        MnhB  37 i 37 
                 +
  KIR65650.1 270 V 270
                 2 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.51
        MnhB  63 a...prileglglllavltgllglllgfltslfl 93 
                     + +l+++g l+a+ ++ l+ l+gf+ + ++
  KIR65650.1 358 LgrrAPLLAAVGTLAAASMAGLPPLVGFVAKEAV 391
                 1333567888888888888877777875444333 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.063
        MnhB  33 qgGlilaaalillyl..afgleelekllrvkla...........prileglglllavltgllglllg 86 
                 ++G +l++a+  + +  afg++   +++    +           p +l+ +gl++ vl+g +g ll 
  KIR65650.1 406 VAGTVLTVAYTARFVwgAFGTRPHADRT----EpqpvpaamlgpPALLAVAGLAAGVLAGPAGALLR 468
                 4555555555544442233333322222....13344556667666777777777777777666664 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 0.48
        MnhB  34 gGlilaaalillylafglee.lekllrvklaprileglglllavltgllglll................g 86 
                 +G++++ a +ll    +l   + + l+ +      ++lgl++ +l+g ++l++                g
  KIR65650.1 456 AGVLAGPAGALLRPYAELFGpVPEHLALW--HGPTLALGLSALALAGGAALFAlrgplapvlarvrapvG 523
                 66666655555554444444433333333..235667777777777777777644333333334444431 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 0.83
        MnhB  67 leglglllavltgllglll 85 
                 l+++ l+ +++ g++ +++
  KIR65650.1 609 LTAMLLVGVTGYGTAMMFV 627
                 2222222222222222222 PP

  == domain 8  score: -1.9 bits;  conditional E-value: 1.1
        MnhB  66 ileglglllavltgllgll 84 
                 +++  ++ +av++ l+gl 
  KIR65650.1 669 RWARRAVGAAVGVVLAGLC 687
                 3333333333333333322 PP

  == domain 9  score: -1.0 bits;  conditional E-value: 0.58
        MnhB  64 prileglglllavltgllglll 85 
                 + ++  +++l++++tg+++l++
  KIR65650.1 727 WDTMGEISVLVVTATGVASLIF 748
                 4566778899999999999887 PP

  == domain 10  score: 94.4 bits;  conditional E-value: 1.7e-30
        MnhB   1 ilrtvarllvplillvslylllrGhnsPGGGFqgGlilaaalillylafgleelekllrvklaprileglglllavltgllglllg..fltslflelel 97 
                 ++++v+rll++ i+l+sl+ll+ Ghn+PGGGF gGl++++al+++yla+g+ el ++ +v   + +++g+gl++ v+tg+++ll+g  +l+s+ l+l l
  KIR65650.1 791 VFEVVTRLLFHTIVLFSLFLLFSGHNAPGGGFSGGLVAGLALAVRYLAGGRYELAEAAPVG--AGTVLGAGLAVSVGTGAFALLAGgsVLQSAKLDLWL 887
                 5799*********************************************************..56********************99********9977 PP

        MnhB  98 .llgevelgtallfdlgVylvVvggl 122
                   +g++ + t l+fd+gVyl+Vvg++
  KIR65650.1 888 pGVGDFYVVTSLFFDIGVYLIVVGLV 913
                 8889999*****************97 PP

>> DUF4040  Domain of unknown function (DUF4040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.5   5.0         5   1.8e+04      36      49 ..     107     120 ..      79     135 .. 0.60
   2 ?   -4.8   0.6         5   1.8e+04      54      60 ..     205     211 ..     202     216 .. 0.45
   3 ?   -2.1   3.3       1.3   4.5e+03      16      40 ..     319     343 ..     304     344 .. 0.57
   4 !   72.7  10.1   5.7e-24     2e-20       2      66 ..     594     657 ..     593     658 .. 0.97
   5 ?   -2.9   0.5       2.2   7.7e+03      15      31 ..     673     689 ..     670     695 .. 0.58
   6 ?   -3.6   0.4       3.8   1.4e+04      11      26 ..     794     809 ..     790     812 .. 0.70

  Alignments for each domain:
  == domain 1  score: -6.5 bits;  conditional E-value: 5
     DUF4040  36 llgAPDvAlTqaav 49 
                 ++ A+ vA++ a++
  KIR65650.1 107 RFAAVLVAFAGAML 120
                 34444444444444 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 5
     DUF4040  54 ttvllll 60 
                 t vll+l
  KIR65650.1 205 TAVLLVL 211
                 3333333 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.3
     DUF4040  16 rlaavillgvvGllvallfvllgAP 40 
                  la   +l +  l+ a+lf++ gA 
  KIR65650.1 319 ALAGTAMLFAHALFKAALFLVVGAI 343
                 4445555555555556666666665 PP

  == domain 4  score: 72.7 bits;  conditional E-value: 5.7e-24
     DUF4040   2 llvlaalaavlardrlaavillgvvGllvallfvllgAPDvAlTqaavveglttvllllalrrlp 66 
                 + ++aal+av ar+rl+a++l+gv+G+++a++fvl+gAPD+AlTq+ +ve+ t+++++l+lrrlp
  KIR65650.1 594 VSAVAALLAVGARRRLTAMLLVGVTGYGTAMMFVLHGAPDLALTQF-LVETATIAVFVLVLRRLP 657
                 5789******************************************.*****************9 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 2.2
     DUF4040  15 drlaavillgvvGllva 31 
                 + + a++ + ++Gl+++
  KIR65650.1 673 RAVGAAVGVVLAGLCLV 689
                 55555555555555554 PP

  == domain 6  score: -3.6 bits;  conditional E-value: 3.8
     DUF4040  11 vlardrlaavillgvv 26 
                 v++r +++ ++l++++
  KIR65650.1 794 VVTRLLFHTIVLFSLF 809
                 5677777777777765 PP

>> Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.1e-10   3.8e-07       4      57 ..      60     112 ..      57     113 .. 0.91
   2 ?   -4.4   0.7         5   1.8e+04      25      36 ..     736     747 ..     734     748 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.1e-10
  Proton_antipo_N   4 WlsvgglsieigfllDklsalmllvvtfvsllvhlYSigYMa.ddegyqRFfayl 57 
                      W++  +l+++++++l +ls lm+l+v +v++lv++Y   Y a +  g +RF a+l
       KIR65650.1  60 WVP--QLRLDLALRLTTLSWLMTLLVGGVGALVLVYCARYFAaGSAGLARFAAVL 112
                      655..789*********************************97799*****9987 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 5
  Proton_antipo_N  25 mllvvtfvsllv 36 
                       +++ t+v++l+
       KIR65650.1 736 LVVTATGVASLI 747
                      578889999998 PP

>> Oxidored_q3  NADH-ubiquinone/plastoquinone oxidoreductase chain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   7.0       3.8   1.4e+04      60      94 ..     130     179 ..      74     284 .. 0.60
   2 !   21.7   0.0   3.6e-08   0.00013       2      98 ..     599     749 ..     598     809 .. 0.61

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 3.8
                  S................STTS----TTCHHHHHHHHHHHHHHHHHHHTT-- CS
  Oxidored_q3  60 l................esaeeeepeslsrslalaalligllllallllll 94 
                  l                 + + +++++++ ++al++ + + +l++l+ +l+
   KIR65650.1 130 LlyvfwelttifsylliGHSTTRRASRWAAAQALTVTT-FGGLAMLVGFLM 179
                  24444444445555555444444444444444444222.222222222222 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 3.6e-08
                  HHHHHH-SBHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHIIIIIHHHHHHHHHHHSSTTS----TTCHHH.HHHHHHHHHHHHHHHHTT--.... CS
  Oxidored_q3   2 allvitsknpvysalfLilsfvgvaglfillgaeFlallqilvYvGAilvlflFvimllesaeeeepeslsrs.lalaalligllllallllllles. 97 
                  all++ +++ + ++l   ++  g+a++f+l ga+ lal q+lv +  i+v++l    l  ++ +++p ++sr+  +++++++g++l+ l l++++   
   KIR65650.1 599 ALLAVGARRRLTAMLLVGVTGYGTAMMFVLHGAPDLALTQFLVETATIAVFVLVLRRLP-ERFSARPLRRSRWaRRAVGAAVGVVLAGLCLVAVGARt 695
                  7899999999***********************************99999888888885.33333333333331334445555566666555555545 PP

                  ...................................................... CS
  Oxidored_q3  98 .....................................................s 98 
                                                                       +
   KIR65650.1 696 appvslafpglavseghgrnvvnvtlvdirawdtmgeisvlvvtatgvaslifQ 749
                  666666666666666666666666666555555555555555555555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (947 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.48
# Mc/sec: 5910.00
//
Query:       KIR65651.1  [L=157]
Description: NADH-ubiquinone oxidoreductase subunit 4L [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.7e-24   83.5   1.2    8.6e-24   83.2   1.2    1.1  1  Oxidored_q2  NADH-ubiquinone/plastoquinone oxidoreductase cha
  ------ inclusion threshold ------
      0.067   13.0   1.6      0.067   13.0   1.6    2.2  2  Ost4         Oligosaccaryltransferase


Domain annotation for each model (and alignments):
>> Oxidored_q2  NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   1.2   9.6e-28   8.6e-24       2     102 ..      10     109 ..       9     113 .. 0.94

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 9.6e-28
                  HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHC..............TTSCGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS- CS
  Oxidored_q2   2 lllliallfliGlygvllrrnllkvliglelisnavnlllvlagvftegtlvi.tnpatefadplpqalvLtaivigaaetavgLallvrlyreygtd 98 
                  l +++++l + G+ ++l +r+l ++l+g+ l++n+vnll++l g++  +++v+ t p +++ d lpqa+vLtaivi+++ ta++La+++r +  +g+d
   KIR65651.1  10 LVVVVGVLAGTGVTLLL-ERSLTRILLGVVLLGNGVNLLILLGGRSG-DAPVVgTAPVDRMSDALPQAMVLTAIVITFGLTAFLLAVAYRSWYLTGND 105
                  67899************.**********************9999986.666667******************************************** PP

                  BCCG CS
  Oxidored_q2  99 dvqe 102
                  +vq+
   KIR65651.1 106 EVQD 109
                  **95 PP

>> Ost4  Oligosaccaryltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.7      0.18   1.6e+03      12      24 ..       2      14 ..       2      17 .. 0.77
   2 ?   13.0   1.6   7.4e-06     0.067       7      25 ..      78      96 ..      76      98 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.18
                HHHHHHHHHHHHH CS
        Ost4 12 nfLGsaamlLIVl 24
                n+ G++++l +V+
  KIR65651.1  2 NGSGATLVLVVVV 14
                5668888888886 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 7.4e-06
                HHHHHHHHHHHHHHHHHHH CS
        Ost4  7 LytLAnfLGsaamlLIVlY 25
                L+ +++++G++a+lL V+Y
  KIR65651.1 78 LTAIVITFGLTAFLLAVAY 96
                899***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.30s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1088.86
//
Query:       KIR65652.1  [L=504]
Description: monovalent cation/H+ antiporter subunit D [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-61  208.7  18.4      1e-61  208.7  18.4    1.8  2  Proton_antipo_M  Proton-conducting membrane transporter
    0.00039   20.4   0.3    0.00039   20.4   0.3    2.9  3  Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), 
  ------ inclusion threshold ------
        1.9    8.7   6.8        7.1    6.9   0.1    3.5  3  Pox_A9           A9 protein conserved region


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   1.7       0.6   3.6e+03     105     140 ..      51      84 ..      34     100 .. 0.55
   2 !  208.7  18.4   1.7e-65     1e-61       1     288 [.     133     416 ..     133     425 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.6
  Proton_antipo_M 105 lpdayveaPtpvsallAatlvkagvlllirllllla 140
                      l++ay  +P++vs+   +  + +g+ l++  l  l+
       KIR65652.1  51 LVEAYRHGPVVVSI--GGWPPSVGIVLVADQLAALM 84 
                      56777777777774..34455555555554444444 PP

  == domain 2  score: 208.7 bits;  conditional E-value: 1.7e-65
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelskalelglnslelllllllllvgllv 94 
                      a+dL+ l++g+E+ l ++++Li+l +++  +++ +  +++++ l+s+i+L g+ l+y++tgtl++ +l+  l++      +l+l+l ll+++ +
       KIR65652.1 133 AGDLFNLFVGFEILLAASFVLITLGGTE-GRIRTGSTYVVVSILSSMIFLAGVGLVYAATGTLNMAQLAGRLDALP-DDVRLALQLTLLLAFGI 224
                      78**********************9888.99**************************************9965555.55678999********* PP

  Proton_antipo_M  95 KsaqvplhlWlpdayveaPtpvsallAatlvkagvlllirlllllavssneisqlllilaiismllgslvalaqtdiKrllAySsishlGymli 188
                      K+a++pl+ Wlpd+y  aP+pv+a +A++l k+gv+++ir+  ll+  +++++ ll+++a+++m++g l+a+aq+d+Krl  +  +sh+Gym+ 
       KIR65652.1 225 KAAVFPLSAWLPDSYPTAPAPVTAVFAGLLTKVGVYAVIRTETLLF-PGGDVAGLLMVVAALTMVVGILGAVAQSDMKRLFSFTLVSHIGYMIF 317
                      ****************************************999999.9********************************************** PP

  Proton_antipo_M 189 alavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPptagFlskfliLeaavavslil 282
                      ++a++++ g+++ai++++ h+ ++ +lFl+ag v  +r  ++d+r++ggLa + P+l ++++v ++ laG+Pp++gFl+k+ +L+a v  + +l
       KIR65652.1 318 GVALSSVAGLSGAIFYVVHHITIQTTLFLVAGLV-EARAGSTDLRRLGGLARVAPLLGVLFFVPAMNLAGIPPLSGFLGKLGLLQAGVGTGGVL 410
                      *******************************887.7788************************************************9987655 PP

  Proton_antipo_M 283 lvlavv 288
                       +++v 
       KIR65652.1 411 PWVLVA 416
                      554432 PP

>> Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   1.1       2.7   1.6e+04      23      39 ..      39      55 ..      36      55 .. 0.62
   2 !   20.4   0.3   6.6e-08   0.00039      13      42 ..      72     101 ..      63     102 .. 0.90
   3 ?   -2.0   0.6      0.65   3.9e+03      26      38 ..     169     181 ..     166     181 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.7
  Proton_antipo_N 23 almllvvtfvsllvhlY 39
                     +l +++v  v llv  Y
       KIR65652.1 39 VLAATLVVAVVLLVEAY 55
                     55666777777777655 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 6.6e-08
  Proton_antipo_N  13 eigfllDklsalmllvvtfvsllvhlYSig 42 
                       i +  D+l alml+v + v+l+v+lYSig
       KIR65652.1  72 GIVLVADQLAALMLVVSSAVTLCVLLYSIG 101
                      566889***********************8 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.65
  Proton_antipo_N  26 llvvtfvsllvhl 38 
                       +vv+++s+++ l
       KIR65652.1 169 YVVVSILSSMIFL 181
                      589*******975 PP

>> Pox_A9  A9 protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1    0.0012       7.1      14      47 ..     160     190 ..     158     194 .. 0.77
   2 ?    2.3   0.4      0.03   1.8e+02      30      47 ..     308     325 ..     305     329 .. 0.88
   3 ?    0.9   0.1     0.089   5.3e+02      23      42 ..     332     351 ..     328     352 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0012
      Pox_A9  14 EnrlRpNsfafVvlksiisMvmyLvlGvaLlyis 47 
                 E r+R+ s  +Vv+ ++ sM+  ++ Gv+L+y +
  KIR65652.1 160 EGRIRTGST-YVVVSILSSMI--FLAGVGLVYAA 190
                 778898884.68888999988..56799998865 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.03
      Pox_A9  30 iisMvmyLvlGvaLlyis 47 
                 ++s + y++ GvaL +++
  KIR65652.1 308 LVSHIGYMIFGVALSSVA 325
                 789999********8875 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.089
      Pox_A9  23 afVvlksiisMvmyLvlGva 42 
                  +Vv  + i   ++Lv G++
  KIR65652.1 332 FYVVHHITIQTTLFLVAGLV 351
                 689999**********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3733.76
//
Query:       KIR65653.1  [L=87]
Description: cation:proton antiporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-11   43.9   5.9    2.3e-11   43.9   5.9    2.1  2  MrpF_PhaF  Multiple resistance and pH regulation protein F (M
  ------ inclusion threshold ------
       0.63   10.1   8.7      0.068   13.2   3.8    1.7  2  DUF2567    Protein of unknown function (DUF2567)
        1.5    8.1   4.1       0.72    9.2   0.2    1.9  2  DUF5305    Family of unknown function (DUF5305)


Domain annotation for each model (and alignments):
>> MrpF_PhaF  Multiple resistance and pH regulation protein F (MrpF / PhaF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   1.4     0.019   1.1e+02       4      32 ..       4      32 ..       3      32 .. 0.75
   2 !   43.9   5.9   3.8e-15   2.3e-11       2      51 ..      32      81 ..      31      82 .. 0.99

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.019
   MrpF_PhaF  4 vvAlDllgtllvallallailtgrpayld 32
                v+A  l + l v +l+ la +++ p++ld
  KIR65653.1  4 VLATVLTVLLSVTALLALARMYRGPSLLD 32
                56666777788888888888888888877 PP

  == domain 2  score: 43.9 bits;  conditional E-value: 3.8e-15
   MrpF_PhaF  2 DRvvAlDllgtllvallallailtgrpayldvalvlAllgFvgtvafarf 51
                DRv+A+D+l  +++++++  a++++++++l+v +vl+llgFvg+va+ rf
  KIR65653.1 32 DRVIAADVLLNTMAGAVGAEAAVNRHATTLPVLVVLSLLGFVGAVALVRF 81
                9************************************************9 PP

>> DUF2567  Protein of unknown function (DUF2567)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   3.8   1.1e-05     0.068      49     103 ..       4      57 ..       1      63 [. 0.85
   2 ?   -0.2   0.2      0.16   9.5e+02      50      65 ..      63      78 ..      55      85 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
     DUF2567  49 lllgllavlavvaavlvWqaRahRGpvmvaalaiglvaaaalaaevGallvklRy 103
                 +l  +l+vl  v+a+l+  aR +RGp ++  + ++ v   ++a +vGa     R+
  KIR65653.1   4 VLATVLTVLLSVTALLAL-ARMYRGPSLLDRVIAADVLLNTMAGAVGAEAAVNRH 57 
                 677788888888888775.7***************************98877775 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.16
     DUF2567 50 llgllavlavvaavlv 65
                +l +l+ l++v av++
  KIR65653.1 63 VLVVLSLLGFVGAVAL 78
                4455666666666654 PP

>> DUF5305  Family of unknown function (DUF5305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.6     0.054   3.2e+02     117     137 ..       5      25 ..       1      36 [. 0.70
   2 ?    9.2   0.2   0.00012      0.72     111     140 ..      56      85 ..      45      87 .] 0.76

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.054
     DUF5305 117 illiilgllaliglvvlirri 137
                 ++ ++++ll++++l +l+r++
  KIR65653.1   5 LATVLTVLLSVTALLALARMY 25 
                 556777788888888777764 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00012
     DUF5305 111 pslaegilliilgllaliglvvlirriift 140
                 +  + +++l++l+ll+ +g+v+l+r+ + +
  KIR65653.1  56 RHATTLPVLVVLSLLGFVGAVALVRFAVRE 85 
                 33333689***************9997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 660.62
//
Query:       KIR65654.1  [L=355]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-40  136.2   3.0    1.3e-39  135.7   3.0    1.1  1  DUF21     Cyclin M transmembrane N-terminal domain
    1.7e-09   38.0   0.1    0.00056   20.3   0.0    2.5  2  CBS       CBS domain
  ------ inclusion threshold ------
      0.038   14.1   0.0       0.27   11.4   0.0    2.2  2  MIase     Muconolactone delta-isomerase


Domain annotation for each model (and alignments):
>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   3.0   2.2e-43   1.3e-39       2     174 ..       9     201 ..       8     203 .. 0.97

  Alignments for each domain:
  == domain 1  score: 135.7 bits;  conditional E-value: 2.2e-43
       DUF21   2 iivlllllsaffsgaEtAlvslsrlrleelaekgk.kkakrllkllknperlLstlligntlvnillsalatalfvellae............galavv 87 
                 + v+ll+l++ff++aE+Alv+ +r rle+ +++g  ++a+++l+ +++++ +L+ +++g+tl++++l+ala++++++ll++            + +a+v
  KIR65654.1   9 VSVVLLALNGFFVAAEFALVASKRYRLEQAVATGGgRGARAALDGVRELSLMLAGAQLGITLCTLGLGALAEPAIEHLLSPllhavglpaaasHVVALV 107
                 5799***********************9999988879*******************************************************9999999 PP

       DUF21  88 iatvivtllilvfgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil.......esesepavseeelkklveeseeegviee 174
                  a+ +vt+l+lv+gE++Pks+a+  ae+ a++la p+r + ++ +P++  l++l+n++l       +++ ++++ ++el+ l+e+s+e+g + +
  KIR65654.1 108 FALGLVTFLHLVVGEMAPKSWAITDAERSATLLALPFRAFARVARPVLSALNALANAMLrlvrvhpQDQLAQVHGPDELRILLEQSREHGLLGA 201
                 999***************************************************************************************8855 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   3.7e-06     0.022       1      54 [.     218     273 ..     218     274 .. 0.90
   2 !   20.3   0.0   9.3e-08   0.00056       1      55 [.     282     337 ..     282     339 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.7e-06
                 HHHHSBS..SCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHH CS
         CBS   1 Vgdimtr..dvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllra 54 
                 V+++m +  ++vtv  +++ e + +  r++g srl V+d  g+++G+v+ r  +ra
  KIR65654.1 218 VAQVMEPfdRIVTVGREDPAERVEQVSRDSGRSRLAVLDAGGEVCGLVHVREAVRA 273
                 67888777799*****************99999*****9888********988775 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 9.3e-08
                 HHHHSBSSCEEEETTSBHHHHHHHHHHHT.SSEEEEE.ETTT..BEEEEEEHHHHHHHH CS
         CBS   1 Vgdimtrdvvtvppdttleealelmrekg.vsrlPVV.dedg..klvGivtlrDllral 55 
                 +g++mt+ + t+p ++++ ea+  m  kg   +l  V ++ g  +++G v l+Dll+ +
  KIR65654.1 282 AGELMTDAF-TLPASASVTEAVTAM--KGrRAQLALVrNGGGptRPIGFVALEDLLEEV 337
                 589998888.***************..553458888855555889***********976 PP

>> MIase  Muconolactone delta-isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.3   1.8e+03      40      73 ..     113     144 ..     104     156 .. 0.63
   2 ?   11.4   0.0   4.6e-05      0.27       9      85 ..     229     306 ..     226     309 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.3
       MIase  40 lvrlwrvvgeya..nisifdvedndeLhelLssLPl 73 
                 +  l  vvge+a  +++i d+e  ++    L +LP 
  KIR65654.1 113 VTFLHLVVGEMApkSWAITDAERSAT----LLALPF 144
                 55666667765422666766666554....445555 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 4.6e-05
       MIase   9 vklpedlpaeevaelkare.karaqelqrqGklvrlwrvvgeyanisifdvedndeLhelLssLPlfpymtievtpLa 85 
                 v++ ++ pae+v++++ +  + r   l + G++  l  v ++++     +++++ eL++  ++LP  + +t  vt+++
  KIR65654.1 229 VTVGREDPAERVEQVSRDSgRSRLAVLDAGGEVCGLVHVREAVRATTTGRAATAGELMTDAFTLPASASVTEAVTAMK 306
                 66778889999999977652678899*************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2564.46
//
Query:       KIR65655.1  [L=309]
Description: sporulation protein SpoOM [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-40  138.0   0.0    3.9e-40  137.7   0.0    1.1  1  Spo0M     SpoOM protein


Domain annotation for each model (and alignments):
>> Spo0M  SpoOM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   0.0   2.2e-44   3.9e-40       9     209 ..      11     216 ..       8     217 .. 0.97

  Alignments for each domain:
  == domain 1  score: 137.7 bits;  conditional E-value: 2.2e-44
                 X----EEEEEES-SEE-TT-EEEEEEEEE--SS-EEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE--EEE-TT-EEEEEEEEE--TT----.... CS
       Spo0M   9 GiGgakVdtvLekeevrpGetlegevevkGGsveqeieeieleLvtrvekeeddkeveetvelarvrvaeaftiepgeereipfelelpletPit.... 103
                 G  g +V t+L ++++rpG  l g+v+++ G  ++ +++++l Lv +ve ++     ++ v++++v++a+af++ +g +r+++f ++lp+etP+t    
  KIR65655.1  11 GWTGLSVRTTLPNPSTRPGLRLPGRVTLRAGPDDVPVRRLRLGLVSQVEPDDP-GAPRRLVQFHQVTIAGAFVVPAGRRRAVDFAVPLPWETPVTifgg 108
                 556779*******************************************9988.677999*************************************99 PP

                 ..-TT--EEEEEEEEESSS--EEEEEEEEE---HHHHHHHHHHHHTTEEEEEEEEEE-G.GG--.SSSEEEEEEEEESHHHHHH-S-EEEEEEEETTEE CS
       Spo0M 104 ..lggakvwleTeldiagavDpgDkDplevePlplqeavlealeelGfrlrsadleegklrgagqelpfvQelefvPsgeyagrldelEvvflaeeeel 200
                   l + +++l+Te +++  +++g + p+ v+Plp q++vl+al++lGf++r+a l  g+l g++q+lp+ Q l +  ++ yag ++elEv+f+a++ +l
  KIR65655.1 109 vpLMSLRMGLRTEASLDVDLEQGALVPIFVHPLPTQQHVLAALDTLGFSMRQAGLVDGRLPGVEQALPLHQRLGWWVAPLYAGPITELEVIFVANSAGL 207
                 998899********************************************************************************************* PP

                 EEEEEE-TT CS
       Spo0M 201 evvlevDrr 209
                 ev+l +Drr
  KIR65655.1 208 EVLLWADRR 216
                 ********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2430.30
//
Query:       KIR65656.1  [L=222]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-47  161.1   9.7    2.6e-47  160.8   9.7    1.1  1  LysE             LysE type translocator
  ------ inclusion threshold ------
        7.1    6.8  13.2       0.53   10.5   6.1    2.6  3  DUF3792          Protein of unknown function (DUF3792)


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8   9.7   2.9e-51   2.6e-47       2     192 ..      20     220 ..      19     221 .. 0.94

  Alignments for each domain:
  == domain 1  score: 160.8 bits;  conditional E-value: 2.9e-51
        LysE   2 slllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveae..ksve..... 93 
                 +++l pGp+ l+vl++++krg+++g+ +a gv++gda l++l++ G+a Llka+p ++ +++++G+ayL w g+ +lr a++    ++  +        
  KIR65656.1  20 AIVLLPGPNSLFVLSTAAKRGVRAGYRAAGGVFLGDAALMTLSAAGVASLLKAYPPLFLVVKYAGAAYLGWVGLTMLRGAWRRWRDRNdpA--Tprlid 116
                 6789******************************************************************************986555332..244777 PP

        LysE  94 ....aslvkpflkglllslsNPkailfwlsvisallakaeqygdagrlilaaglvvasliwfsllaflaarlsrrlsskkvl.riinvvvgvlligfav 187
                     a+l++pf+++l++sl+NPkailf++s++ ++++++++++  ++l+l +++ v s ++++ l+f + +l++ ++++++l   +++ v+++++gf v
  KIR65656.1 117 aaepAELRSPFRRALVISLLNPKAILFFVSFFIQFVDPGYAWPALSFLLLGLIAQVTSALYLTALIFAGTFLAAQFRQRRRLaAGATTGVAAVFLGFSV 215
                 77789*********************************************************************99999988799************** PP

        LysE 188 kllle 192
                 kl+++
  KIR65656.1 216 KLATA 220
                 **985 PP

>> DUF3792  Protein of unknown function (DUF3792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.3      0.63   5.7e+03      85      85 ..      36      36 ..      11      69 .. 0.56
   2 ?   -2.2   0.2      0.49   4.4e+03      34      34 ..      70      70 ..      35      92 .. 0.55
   3 ?   10.5   6.1   5.9e-05      0.53      40      84 ..     172     217 ..     130     221 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.63
     DUF3792 85 l 85
                +
  KIR65656.1 36 A 36
                1 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.49
     DUF3792 34 e 34
                 
  KIR65656.1 70 L 70
                2 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 5.9e-05
     DUF3792  40 liliililsv.figGflagkkakkkgllnGllvGllyflillllsl 84 
                 +++++++ ++ f+g fla+  +++++l  G+ +G++ +++ + ++l
  KIR65656.1 172 VTSALYLTALiFAGTFLAAQFRQRRRLAAGATTGVAAVFLGFSVKL 217
                 455555555549************************9888666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1462.40
//
Query:       KIR65657.1  [L=414]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-44  149.0   2.1    2.4e-43  147.5   0.4    2.2  2  Pyridox_ox_2    Pyridoxamine 5'-phosphate oxidase
    7.5e-22   78.5   0.1    1.2e-21   77.8   0.1    1.3  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
     0.0038   17.4   0.0     0.0068   16.6   0.0    1.4  1  Acetyltransf_1  Acetyltransferase (GNAT) family
      0.005   16.5   0.2      0.014   15.0   0.2    1.9  1  Acetyltransf_8  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.13   12.0   0.0       0.29   10.8   0.0    1.5  1  FMN_bind_2      Putative FMN-binding domain


Domain annotation for each model (and alignments):
>> Pyridox_ox_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.5   0.4   6.7e-47   2.4e-43       1     141 []      20     164 ..      20     164 .. 0.98
   2 ?    0.5   0.1      0.15   5.4e+02      85     136 ..     252     305 ..     224     309 .. 0.65

  Alignments for each domain:
  == domain 1  score: 147.5 bits;  conditional E-value: 6.7e-47
                   -HHHHHHHHHC-SEEEEEEEETTEEEEEEEEEEEETTEEEEEEETTSHCCHCCC..T--ECEEEEEEEEEEE-SE.GG.EEEEEEEEEEEEEEEE-- CS
  Pyridox_ox_2   1 dreeilalLdegevgrlafvddgepvilPvnyvvdgdslyfhgakgsrlaaalr..gapvcvvvtevdglvlars.fn.slnyrSVvvrGraeevtd 93 
                   dr++++a+Lde+ ++ laf++dgep +lP+ +v+ gd+ly+hg++gsr + a+r  g+pvcv+vt +dgl+  rs f+ s nyrSVv++G+a++vtd
    KIR65657.1  20 DRAAAHAVLDEAYHCALAFTVDGEPRVLPTLHVRVGDTLYLHGSTGSRPLLAARgdGLPVCVAVTLLDGLIYGRSqFHhSANYRSVVAHGTAHLVTD 116
                   799*********************************************99999999***************************************** PP

                   HHHHHHHCCCHHHHHSTTTGGCSB---CCCCCTEEEEEEEEEEEEEEE CS
  Pyridox_ox_2  94 eeekaealellvekivpgrwenlrpptrkelkatsvlrlkieevsgrr 141
                   + ek+++l++lvek++ gr++++rpp+r+el++t+vl+l+++evs+r+
    KIR65657.1 117 AGEKSAVLTALVEKAAAGRSADSRPPSRRELAETAVLALPLREVSVRA 164
                   *********************************************995 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.15
                   EEEEEEE--HHHHHHHCCCHHHHH.STTT..GGCSB---CCCCCTEEEEEEEEEE CS
  Pyridox_ox_2  85 rGraeevtdeeekaealellveki.vpgr..wenlrpptrkelkatsvlrlkiee 136
                    G  ++  d++  ae  +++++     +r  w +    t + + +ts++++++++
    KIR65657.1 252 LGSHRPA-DPAGTAETIRAALDAHhRGERvpWVQRCAVTGAVVGSTSYYEVDPDR 305
                   5666666.55555555555555552444477884446666666779999999986 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.1   3.3e-25   1.2e-21       2     137 ..     226     365 ..     225     366 .. 0.89

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 3.3e-25
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmry.lpe.pltleeaeewlerawaeeseeegygwaivlkdtgv.iGsvglrdleeedeeaelgym.lapsfw 92 
                     ++L pl  +++++l++  +dp+v+++ +++ p++++ + e ++ a+ +  ++e + w+ +   tg+ +Gs ++++++++++++ +gy+ l++++w
      KIR65657.1 226 VVLEPLDLAHADDLHAATADPQVWQHlGSHrPADPAGTAETIRAALDAHHRGERVPWVQRCAVTGAvVGSTSYYEVDPDRRAVAIGYTyLGRPWW 320
                     78*************99*******9976668************776666666667788866667755*******************9846699** PP

  Acetyltransf_3  93 gkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     + G+ tea   ll+ afeelg+ r+v+++d +Ne+S+r +e+lG 
      KIR65657.1 321 RTGVNTEAKLLLLTRAFEELGAVRVVWHTDIRNERSQRAIERLGA 365
                     ********************************************7 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.9e-06    0.0068      28     116 ..     274     364 ..     246     365 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.9e-06
                     HHSTTCEEEE..EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHHHTT CS
  Acetyltransf_1  28 fsleaegllv..aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYeklG 116
                     +++ +   +v  +   g ++G  s++ +++ +++ ++i   +  + +++ G+ ++    l+ ra+ee g+ ++v++++  n++++r  e+lG
      KIR65657.1 274 HHRGERVPWVqrCAVTGAVVGSTSYYEVDP-DRRAVAIGYTYLGRPWWRTGVNTEAKLLLLTRAFEElGAVRVVWHTDIRNERSQRAIERLG 364
                     33444467777888889***********99.99999**********************************999****************999 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2     4e-06     0.014      71     142 ..     297     370 ..     228     373 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4e-06
                     GCS---TT-EEEEE...EESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEE CS
  Acetyltransf_8  71 eyydaepgdrGiHl...ligeaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekeke 142
                      yy+++p  r + +    +g ++ r  g+ t+    l+ ++f++ ++ rvv   d+rNer+ r++e++G ++e+ 
      KIR65657.1 297 SYYEVDPDRRAVAIgytYLGRPWWR-TGVNTEAKLLLLTRAFEELGAVRVVWHTDIRNERSQRAIERLGATREGV 370
                     4557777776665422245666664.566666666788999****************************999875 PP

>> FMN_bind_2  Putative FMN-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.1e-05      0.29     103     139 ..     100     136 ..      93     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.1e-05
                 EEEEEEEEEEEEEE---HHHHHHHHHHHHHHHS---. CS
  FMN_bind_2 103 WnYaaVhvyGkakviedeeelrkqledltdqaEaerk 139
                  nY +V ++G+a++++d+ e++++l++l+++a a r+
  KIR65657.1 100 ANYRSVVAHGTAHLVTDAGEKSAVLTALVEKAAAGRS 136
                 59****************************9988443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 2591.75
//
Query:       KIR65658.1  [L=445]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-16   61.0   0.0    1.4e-16   60.7   0.0    1.1  1  Aminotran_1_2   Aminotransferase class I and II
    8.1e-14   51.0   0.6    6.6e-13   48.1   0.4    2.5  2  GntR            Bacterial regulatory proteins, gntR family
    0.00019   21.4   0.0    0.00051   20.0   0.0    1.7  1  HTH_Crp_2       Crp-like helix-turn-helix domain
    0.00079   19.3   0.4    0.00079   19.3   0.4    4.0  4  MarR_2          MarR family
     0.0015   18.6   2.5     0.0026   17.9   0.3    2.6  2  HTH_28          Helix-turn-helix domain
      0.003   17.4   0.1      0.013   15.3   0.1    2.2  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
     0.0032   17.2   0.2       0.02   14.7   0.2    2.5  1  HTH_IclR        IclR helix-turn-helix domain
     0.0041   16.0   0.0     0.0078   15.0   0.0    1.4  1  Aminotran_MocR  Alanine-glyoxylate amino-transferase
     0.0046   16.5   0.0      0.011   15.3   0.0    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding
     0.0064   16.4   0.0      0.013   15.4   0.0    1.5  1  HTH_36          Helix-turn-helix domain
     0.0082   16.3   0.0      0.018   15.3   0.0    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0094   16.0   0.1       0.04   13.9   0.1    2.1  1  HTH_29          Winged helix-turn helix
  ------ inclusion threshold ------
      0.019   14.8   2.2      0.058   13.2   0.0    2.9  3  HTH_23          Homeodomain-like domain
       0.03   13.7   0.3       0.38   10.2   0.0    2.3  2  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.071   13.5   0.0       0.44   10.9   0.0    2.1  2  Rrf2            Transcriptional regulator
      0.095   13.1   2.2       0.11   12.8   0.1    2.3  2  E3_binding      e3 binding domain
      0.098   12.6   0.0       0.29   11.1   0.0    1.8  2  HTH_11          HTH domain
       0.12   12.3   0.0         11    6.0   0.0    2.4  2  TrmB            Sugar-specific transcriptional regulator TrmB
       0.16   11.8   0.0       0.53   10.1   0.0    1.8  1  HTH_38          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   1.5e-19   1.4e-16      39     363 .]     126     431 ..      95     431 .. 0.83

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 1.5e-19
                    ST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHH CS
  Aminotran_1_2  39 eygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlea 134
                     y    +lpel  a  + l      +  + a v+v++Ga  +ie l ++  l pgd++ v dp +a+  + + + g+  + +p+++e   +    +
     KIR65658.1 126 GYASAGVLPELADAARERLA----ADGVPAADVTVTGGALDGIERLLAAH-LRPGDAVAVEDPGWANLLDLVAALGLRPIGVPVDDE---GPIEAG 213
                    56666667777777777777....55568889****************99.9*******************************8844...444456 PP

                    HHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHT.TEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG- CS
  Aminotran_1_2 135 leealkeapegnkktkvilvesphNPtGtvatleeleklldlakky.nlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeR 229
                    +++al+        + ++++  ++NPtG++ + +   +l +l   +  lll+ D+  a+++       ++++++    + + v+s+sK +G + +R
     KIR65658.1 214 VCAALAAG-----ARALVVTSRAQNPTGAAVSADRAAALRALLAGReDLLLIEDDHAAELARV-----PLHPLAGVTGAWAFVRSVSKPYG-PDLR 298
                    66666652.....3469******************9999999998845566666655566665.....4444444444468**********.778* PP

                    EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHHCHHHHHHH CS
  Aminotran_1_2 230 vGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsaetakelskk 323
                    ++ ++g++a v  ++  +r +    s++lq++v+a  +d+   +  ++ + + +++rr  l ++La+ gl+  +  +g+ ++  ++ e  +++  +
     KIR65658.1 299 LAVLAGDEATVARVAGRARVGAGwvSTVLQRLVLALWRDPAT-AALVDRAGADYERRRGDLLAALAARGLAGHGR-TGINVWLPVPDE--TSAVTA 390
                    ********99999988888666666**************995.67999999**************9999998875.9*****999999..889999 PP

                    HHHTCTEEEEEGGGGTS...TTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 324 Lleevgvyvtpgtsftv...pgrlRitvAglteeeleelveal 363
                    L++  g +v pg  f++   pg +R+tv  l++++l  l++a+
     KIR65658.1 391 LRDA-GWAVAPGALFRIaatPG-VRVTVGQLDPADLPALADAI 431
                    ****.**************666.***************99987 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.4     7e-16   6.6e-13       2      64 .]      12      74 ..      11      74 .. 0.96
   2 ?   -0.4   0.0      0.94   8.9e+02      11      27 ..     165     180 ..     164     182 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 7e-16
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                ++++ + ++  ++ g l +G++LP++r+Laae+gVs  tv +A++ L ++gl+    + Gt+V
  KIR65658.1 12 AAEISASIESGVRVGDLPAGAALPPVRALAAELGVSPATVARAYQDLRQRGLLATAGRHGTRV 74
                678999999999*************************************************98 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.94
                 HHHHTTSS-TTSB---H CS
        GntR  11 edIlsgelrpGdkLPse 27 
                 e++l+ +lrpGd+  ++
  KIR65658.1 165 ERLLAAHLRPGDAV-AV 180
                 689999*****987.55 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   5.4e-07   0.00051      26      58 ..      39      73 ..      36      78 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5.4e-07
                HHHHHTTSSHHHHHHHHHHHHHTTSEE.ETEE.EE CS
   HTH_Crp_2 26 elAsmlGltretvsrilseLkreglis.rgrr.ir 58
                 lA+ lG+++ tv r+ ++L+++gl+   gr+  r
  KIR65658.1 39 ALAAELGVSPATVARAYQDLRQRGLLAtAGRHgTR 73
                69************************953554354 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.4   8.4e-07   0.00079      23      53 ..      36      66 ..      24      85 .. 0.85
   2 ?   -1.4   0.2       2.4   2.2e+03      16      46 ..     304     331 ..     299     333 .. 0.71
   3 ?   -2.4   0.1       4.7   4.5e+03       8      18 ..     356     366 ..     350     370 .. 0.69
   4 ?    0.0   0.0      0.84     8e+02      10      27 ..     402     419 ..     401     420 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8.4e-07
                EHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2 23 tvgelarrlglsksavsrilkrLvaaGLver 53
                 v++la++lg+s+++v r+ ++L ++GL+ +
  KIR65658.1 36 PVRALAAELGVSPATVARAYQDLRQRGLLAT 66
                799*************************965 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.4
                 CTTTSEEEHHHHHHHHTSSHHHHHHHHHHHH CS
      MarR_2  16 rrpgrdltvgelarrlglsksavsrilkrLv 46 
                   ++   tv+ +a r ++  + vs +l+rLv
  KIR65658.1 304 G-DE--ATVARVAGRARVGAGWVSTVLQRLV 331
                 3.33..6888888888888888888888887 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.7
                 HHHHHHHHCTT CS
      MarR_2   8 arvLaaLgrrp 18 
                  ++LaaL++r+
  KIR65658.1 356 GDLLAALAARG 366
                 56777777765 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.84
                 HHHHHHCTTTSEEEHHHH CS
      MarR_2  10 vLaaLgrrpgrdltvgel 27 
                 +L+ +++ pg ++tvg+l
  KIR65658.1 402 ALFRIAATPGVRVTVGQL 419
                 6999******999**997 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.3   2.7e-06    0.0026      14      48 ..      36      70 ..      31      77 .. 0.85
   2 ?   -2.3   0.1       5.3     5e+03       2      13 ..     243     254 ..     242     255 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.7e-06
      HTH_28 14 svreaArelgisrrtvyrWikryeegGiagLvprr 48
                +vr++A+elg+s+ tv r  + +++ G+ + + r+
  KIR65658.1 36 PVRALAAELGVSPATVARAYQDLRQRGLLATAGRH 70
                69*************************95555565 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.3
      HTH_28   2 RleiikllaaGh 13 
                 R+ ++++l+aG+
  KIR65658.1 243 RAAALRALLAGR 254
                 9999***99996 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.4e-05     0.013      19      42 .]      36      59 ..      35      59 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.4e-05
  HTH_AsnC-type 19 syaeLAervGlSestvlrRvrrLe 42
                   ++++LA+++G+S++tv+r ++ L+
     KIR65658.1 36 PVRALAAELGVSPATVARAYQDLR 59
                   789***************999886 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   2.2e-05      0.02      20      50 ..      36      66 ..      28      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.2e-05
                BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR 20 tlselArrtglpkStvhRlLqtLvelGyveq 50
                 ++ lA+++g++++tv R  q L ++G++ +
  KIR65658.1 36 PVRALAAELGVSPATVARAYQDLRQRGLLAT 66
                6899************************975 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.3e-06    0.0078     129     215 ..     180     264 ..     160     276 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.3e-06
                     EEES--HHHHHHHHHHT-EEEEEEEETTEE-HHHHHHHHHC-TTEEEEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-T CS
  Aminotran_MocR 129 vtvpGydrhfllleelGielltvdlqddGpdvdaveklvaedasvkGilavpkysnptGetiseevarrlaalkaaapdfrifadda 215
                     v  pG+   + l+  lG++ + v+++d+Gp  + v   +a  a  + +++  +  nptG ++s+++a  l al a   d+ +  dd 
      KIR65658.1 180 VEDPGWANLLDLVAALGLRPIGVPVDDEGPIEAGVC--AALAAGARALVVTSRAQNPTGAAVSADRAAALRALLAGREDLLLIEDDH 264
                     678999999*********************888775..45556778899999***************************99999885 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.1e-05     0.011      21      46 ..      38      63 ..      36      64 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGl 46
                r LA +lg+Sp+tv r  + L + Gl
  KIR65658.1 38 RALAAELGVSPATVARAYQDLRQRGL 63
                89**********************98 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.4e-05     0.013      24      55 .]      33      64 ..      29      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
      HTH_36 24 cfpsqetlakrlglsknTvsraikeLeqlGyi 55
                + p ++ la+ lg+s  Tv ra + L+q G++
  KIR65658.1 33 ALPPVRALAAELGVSPATVARAYQDLRQRGLL 64
                6788999***********************97 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.9e-05     0.018      25      59 ..      37      71 ..      29      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.9e-05
                    HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTE CS
  Fe_dep_repress 25 tkdlaerLnvspssVsemlkkLekdGyveyekykg 59
                    +  la +L+vsp++V    + L++ G++ ++++ g
      KIR65658.1 37 VRALAAELGVSPATVARAYQDLRQRGLLATAGRHG 71
                    6689************************9998876 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   4.2e-05      0.04      15      49 ..      37      71 ..      32      80 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.2e-05
      HTH_29 15 vsqiAkllglsrrtvyrwlkrfeegGlaalldrrr 49
                v+ +A+ lg+s+ tv r+  + ++ Gl a+  r++
  KIR65658.1 37 VRALAAELGVSPATVARAYQDLRQRGLLATAGRHG 71
                7899**********************988776554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.1e-05     0.058      20      46 ..      37      63 ..      36      66 .. 0.88
   2 ?   -2.2   0.1       4.3     4e+03       6      17 ..     242     253 ..     240     256 .. 0.83
   3 ?   -1.4   0.1       2.5   2.3e+03      15      40 ..     305     329 ..     298     342 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.1e-05
      HTH_23 20 vreIAreLgvsrrTvyrwlkryreeGl 46
                vr+ A+eLgvs+ Tv r  +  r+ Gl
  KIR65658.1 37 VRALAAELGVSPATVARAYQDLRQRGL 63
                7999*************9999888885 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.3
      HTH_23   6 eRlrillllaeG 17 
                 +R+ +l++l+ G
  KIR65658.1 242 DRAAALRALLAG 253
                 699999999976 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.5
      HTH_23  15 aeGlsvreIAreLgvsrrTvyrwlkr 40 
                 +e ++v+++A +  v   +v+ +l+r
  KIR65658.1 305 DE-ATVARVAGRARVGAGWVSTVLQR 329
                 43.78888888888888888888887 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0004      0.38      29      50 ..      36      57 ..      32      59 .. 0.91
   2 ?    0.8   0.3      0.34   3.2e+02      23      52 .]     302     331 ..     299     331 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0004
  HTH_Tnp_ISL3 29 svkavArqlgvSwtTVwrildr 50
                  +v+a A++lgvS+ TV r++ +
    KIR65658.1 36 PVRALAAELGVSPATVARAYQD 57
                  899***************9987 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.34
  HTH_Tnp_ISL3  23 lllesrsvkavArqlgvSwtTVwrildryv 52 
                   l+ + ++v+ vA + +v++  V  +l r+v
    KIR65658.1 302 LAGDEATVARVAGRARVGAGWVSTVLQRLV 331
                   556669***********9998888888875 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00046      0.44      28      57 ..      37      66 ..      29      78 .. 0.87
   2 ?   -1.0   0.0       2.4   2.2e+03      17      50 ..     299     331 ..     297     333 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00046
                HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        Rrf2 28 seeiaerqnispsylekilakLrkaglvks 57
                ++++a++ ++sp  +++  + Lr+ gl+ +
  KIR65658.1 37 VRALAAELGVSPATVARAYQDLRQRGLLAT 66
                789************************976 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.4
                 HHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHH CS
        Rrf2  17 LakeeeeepvsseeiaerqnispsylekilakLr 50 
                 La  +++e ++++ +a r  + +  ++ +l++L 
  KIR65658.1 299 LAVLAGDE-ATVARVAGRARVGAGWVSTVLQRLV 331
                 77778887.99*********99999999999985 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   0.00012      0.11       3      22 ..      33      52 ..      32      71 .. 0.89
   2 ?   -1.7   0.2       4.2     4e+03       6      25 ..     139     158 ..     139     160 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
                E-HHHHHHHHHCT--TTTS- CS
  E3_binding  3 AsPaaRklAkelGidLsdvk 22
                A P +R lA+elG+++++v+
  KIR65658.1 33 ALPPVRALAAELGVSPATVA 52
                569**************995 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.2
                 HHHHHHHHCT--TTTS---C CS
  E3_binding   6 aaRklAkelGidLsdvkGtG 25 
                 aaR   +  G+  +dv+ tG
  KIR65658.1 139 AARERLAADGVPAADVTVTG 158
                 67877777899999999887 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0003      0.29      19      51 ..      38      68 ..      36      73 .. 0.83
   2 ?   -3.3   0.0       9.8   9.2e+03      39      51 ..     391     411 ..     388     412 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
      HTH_11 19 eeLAeeLnvSrrtvrrdIkaLeelgvpIesepg 51
                  LA eL+vS +tv r  ++L+  g  + +++g
  KIR65658.1 38 RALAAELGVSPATVARAYQDLRQRG--LLATAG 68
                57********************998..555555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.8
      HTH_11  39 Leelg........vpIesepg 51 
                 L+++g        ++I ++pg
  KIR65658.1 391 LRDAGwavapgalFRIAATPG 411
                 666666666666699999998 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.012        11      25      55 ..      37      67 ..      36      79 .. 0.82
   2 ?    3.6   0.0     0.065        62      16      47 ..     300     331 ..     298     333 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.012
                HCHHCCCTTSSCHCHHHHHHHHHHCTSEEEE CS
        TrmB 25 adeiaeelgvprskvYevLrsLedkGlVere 55
                ++ +a elgv+ ++v ++ + L ++Gl  + 
  KIR65658.1 37 VRALAAELGVSPATVARAYQDLRQRGLLATA 67
                67899*********************98765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.065
                 HHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHH CS
        TrmB  16 aLlklgpatadeiaeelgvprskvYevLrsLe 47 
                 a+l+ ++at+  +a ++ v    v  vL++L+
  KIR65658.1 300 AVLAGDEATVARVAGRARVGAGWVSTVLQRLV 331
                 788899*************************8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00056      0.53      23      39 ..      37      53 ..      36      54 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00056
      HTH_38 23 lreIArrLgrspsTIsR 39
                +r+ A +Lg+sp T++R
  KIR65658.1 37 VRALAAELGVSPATVAR 53
                79*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3151.04
//
Query:       KIR65659.1  [L=234]
Description: uracil-DNA glycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-34  117.3   0.0    7.6e-34  116.9   0.0    1.1  1  UDG       Uracil DNA glycosylase superfamily


Domain annotation for each model (and alignments):
>> UDG  Uracil DNA glycosylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.0   4.3e-38   7.6e-34       1     153 [.      46     224 ..      46     226 .. 0.87

  Alignments for each domain:
  == domain 1  score: 116.9 bits;  conditional E-value: 4.3e-38
                 HHC-CTT-SEEEEESSTCHHHHHHSSSS.-STT--HHHHHHHCCCCCCCHHGCTEEEEESSS.......SEC...GCTTCCCCTCCHHHHHHHHHHHHS CS
         UDG   1 pgegppdakvvivGeaPgaeedatglpFsgragnllrkllneaglkrdleseqgvyitnvvkcrp...pgnr...dtptsaeikacaplleeeiellkp 93 
                 +g g +da+vv+vGe+Pg+ ed++glpF+g+ag+llr+++++agl++      g+y+tn+vk++    +g+r   +tp + ++ ac+p+l +e ++l+p
  KIR65659.1  46 FGRGGADARVVLVGEQPGDMEDQKGLPFVGPAGRLLRRAVDDAGLDP-----TGLYLTNAVKHFRfelRGKRrihQTPDRVHVTACRPWLVAEFARLRP 139
                 57899******************************************.....**********9963334666799************************ PP

                 SEEEEESHHHHHH....HHHHSCESCCCSCT..........................SEEEEES-SSTTTTTTTTSHHHHHHHHHHH CS
         UDG  94 rlivllGktaakall..geklgklrgkllea....k.....................irvlplphPsplnrnffksnpelkaeawed 153
                 +++v+lG+taakall   +++++ rg+l+ +    +                      r+l++ hPs+++r   +++ ++ a  ++d
  KIR65659.1 140 EVVVVLGATAAKALLgpSFRVTRQRGTLMPWpasaErpedfarvpvdsaggvadapaARLLATIHPSAVLRA--DDQDTAYAGLVAD 224
                 **************99777999999999999665505556667777888899999****************9..5555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1700.32
//
Query:       KIR65660.1  [L=451]
Description: MFS transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-27   95.3  54.4    1.6e-17   63.5  17.9    2.7  2  MFS_1          Major Facilitator Superfamily
    1.8e-11   43.6  26.1    1.4e-07   30.8   7.0    2.8  3  Sugar_tr       Sugar (and other) transporter
    3.2e-05   22.7  16.0      0.017   13.7   3.2    2.8  2  MFS_2          MFS/sugar transport protein
  ------ inclusion threshold ------
       0.99    9.2   3.9        1.6    8.5   3.9    1.3  1  Bclt           Putative Bcl-2 like protein of testis
          3    6.7   9.0      0.085   11.8   1.9    2.0  3  Nuc_H_symport  Nucleoside H+ symporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8  28.5   5.6e-13     2e-09      30     236 ..      53     288 ..      25     299 .. 0.74
   2 !   63.5  17.9   4.4e-21   1.6e-17      33     178 ..     298     444 ..     286     449 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 5.6e-13
       MFS_1  30 spseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa...sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigl 125
                   +++gl+ ++  +g a++++p+ r+++ +Grr+ l++++l+ a+g++l ++a    +++ll+++ +l G g+ a++  + + ++d++ + +rgr ++l
  KIR65660.1  53 GTAVAGLAQSAAVVGGALLAVPVTRIMTGHGRRPGLVTAYLVGAAGGVLVVVAaatRQVPLLFLGMLLFGGGS-AANLQARYTAVDLAEPARRGRQLSL 150
                 3456999***************************999999999999555553335566778888888888885.66666667888999999******** PP

       MFS_1 126 lsagfslGailgpllgglla.sslgWrav.....fyilaivslla.fvlfllllpeepperkrkspkeee......................kgtgpap 195
                 +  ++ +Ga+ +p +++l   +  gW ++     f + a++++l  +vl +ll p++  + +r +++  e                       ++ +a+
  KIR65660.1 151 VVWATTIGAVAAPNFAALADrTTRGWGLPslagpFAFSAVAFALTaGVLLVLLRPDPLLTARRLADA--EaaadadaapaaaaagraagpaaDRRRGAG 247
                 *****************99988888777666666888877777763555444444444444444444..245998888888887777777766666677 PP

       MFS_1 196 lvpawkallkdpvlwillialllfffgfsglltllplylqe 236
                 +++aw+ ++ +p   + ++a++++++++ ++++++p+ l e
  KIR65660.1 248 MRTAWRVVRERPAARLGIAAVAVGHLVMVAVMSMTPVRLGE 288
                 777*********88679999999999**********95444 PP

  == domain 2  score: 63.5 bits;  conditional E-value: 4.4e-21
       MFS_1  33 eigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagf 130
                 ++g +l+l  +g+ ++s+++G+l+dr+Grr+v+l gl++++++++++  + ++ + l v+ vl Glg ++ + ag +l+++ +p + r+++ gl  +++
  KIR65660.1 298 VVGVVLSLHIAGMYAFSPVVGWLTDRLGRRPVILGGLAVLLVACAVAGASgHHTPGLSVGLVLLGLGWSGTMVAGSTLLSESVPADVRPSVQGLSDLTM 396
                 57889999***********************************7777745677779******************************************* PP

       MFS_1 131 slGailgpllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                 +l+ + + +l+g++++ +g++ + +++ai+++ ++ l+l  +p ++p+
  KIR65660.1 397 GLAGAAAGALSGFVMQVAGYPTLTLLAAIATVPLLALALRAVPGRAPD 444
                 **********************************88766666555554 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.8     0.026        94      99     137 ..      20      58 ..      12      62 .. 0.86
   2 !   22.6   4.3   1.2e-08   4.1e-05      47     174 ..      56     180 ..      50     232 .. 0.80
   3 !   30.8   7.0   3.9e-11   1.4e-07      48     186 ..     299     432 ..     286     439 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.026
                 TSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHH CS
    Sugar_tr  99 knsvevlivgRvlvGigvGlasvlvPmyisEiApkklRg 137
                 ++++ +l+v +++ Gigv +   +  ++++ +A ++++g
  KIR65660.1  20 RRTLRLLVVTQIIGGIGVTIGISVGALLAARVAGTAVAG 58 
                 46788999**************99999999999998887 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 1.2e-08
                 HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHH.HHTTS-SCCHHHHHHHHH CS
    Sugar_tr  47 lsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmy.isEiApkklRgalvslyq 144
                   gl  s+++vG+++ ++ +  +++  GR+++l++a ++  +g+vl ++a ++++v +l++g +l G   G a +l   y +  +A ++ Rg+  sl  
  KIR65660.1  56 VAGLAQSAAVVGGALLAVPVTRIMTGHGRRPGLVTAYLVGAAGGVLVVVAAATRQVPLLFLGMLLFGG--GSAANLQARYtAVDLAEPARRGRQLSLVV 152
                 56888999*******************************************************99774..55555555551569*************** PP

                 HHHHHHHHHHHHHHHHHHTSS-TTHHHHHH CS
    Sugar_tr 145 laitfGilvaaifglglnktsnadgwrill 174
                 +a+t+G + a  f +  ++t+   gw ++ 
  KIR65660.1 153 WATTIGAVAAPNFAALADRTTR--GWGLPS 180
                 ***************9988888..565542 PP

  == domain 3  score: 30.8 bits;  conditional E-value: 3.9e-11
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqla 146
                 +g+++s+ ++G  + s ++g+l+dr+GR++++l + ++++++ ++ +a+    ++  l vg vl+G+g+ ++ v  ++++sE  p+++R  + +l +l 
  KIR65660.1 299 VGVVLSLHIAGMYAFSPVVGWLTDRLGRRPVILGGLAVLLVACAVAGASG--HHTPGLSVGLVLLGLGWSGTMVAGSTLLSESVPADVRPSVQGLSDLT 395
                 688999999999999*******************9999999999999999..79*****************************************9997 PP

                 HHH.HHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHH CS
    Sugar_tr 147 itf.Gilvaaifglglnktsnadgwrillglqlvpalllli 186
                 + + G   +a +g++++  +    ++ l  l+++ ++ ll+
  KIR65660.1 396 MGLaGAAAGALSGFVMQVAG----YPTLTLLAAIATVPLLA 432
                 75414444444444443333....55555555555555554 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   3.2   4.6e-06     0.017     223     326 ..      20     123 ..      16     141 .. 0.83
   2 !   13.5   5.0   5.4e-06     0.019     263     386 ..     301     416 ..     247     436 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.6e-06
       MFS_2 223 nraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlll.qpsnlllflvl 320
                  r +++l+++ ++   +++++ +  ++ +  v g++ a  +++++v+ +all++p+  ++ +  g++   + ++l+ ++++vlv+++  ++++ l+++ 
  KIR65660.1  20 RRTLRLLVVTQIIGGIGVTIGISVGALLAARVAGTAVAGLAQSAAVVGGALLAVPV-TRIMTGHGRRPGLVTAYLVGAAGGVLVVVAaATRQVPLLFLG 117
                 68899****************************************99999999997.56777889**99****************99644445455555 PP

       MFS_2 321 lviagf 326
                 ++++g 
  KIR65660.1 118 MLLFGG 123
                 554443 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.4e-06
       MFS_2 263 vfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffav 361
                 v+l ++++++ +++p++ +l+ rlg++ ++l g+++++v  +++ +    ++  + v lv+ g+g  + +++   +l+++v ++        + ++ ++
  KIR65660.1 301 VVLSLHIAGMYAFSPVVGWLTDRLGRRPVILGGLAVLLVACAVAGAS-GHHTPGLSVGLVLLGLGWSGTMVAGSTLLSESVPADV-------RPSVQGL 391
                 56667899999******************************999999.7777778888888888877777777777777776555.......4445555 PP

       MFS_2 362 lsfisklatgiglgvsgllLsafgy 386
                   ++  la++ ++++sg++ + +gy
  KIR65660.1 392 SDLTMGLAGAAAGALSGFVMQVAGY 416
                 5555556666666666666666666 PP

>> Bclt  Putative Bcl-2 like protein of testis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.9   0.00045       1.6      84     126 ..     207     250 ..     200     256 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00045
        Bclt  84 Pgvrperpsedaaga.ptglpaaapmlrGaGdGvdrredarare 126
                 P + ++r ++++a a +++ paaa++ r aG  +drr +a  r 
  KIR65660.1 207 PLLTARRLADAEAAAdADAAPAAAAAGRAAGPAADRRRGAGMRT 250
                 677788876666555135678*****************998775 PP

>> Nuc_H_symport  Nucleoside H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.4      0.44   1.6e+03      61      61 ..      80      80 ..      31     122 .. 0.48
   2 ?   -2.4   0.2       0.5   1.8e+03      86     312 ..     106     122 ..      61     162 .. 0.74
   3 ?   11.8   1.9   2.4e-05     0.085     247     364 ..     301     413 ..     265     437 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.44
  Nuc_H_symport 61 a 61
                   +
     KIR65660.1 80 T 80
                   1 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.5
  Nuc_H_symport  86 aqvtefealflvlLvyslaymPtlaltnsiafanlrDvvtdfprirvlGtvGfilaslaflllvvsladlelsrlqlliaagvslllavyaltLPk 181
                    a +                                                                                             
     KIR65660.1 106 AAT--------------------------------------------------------------------------------------------- 108
                    333............................................................................................. PP

  Nuc_H_symport 182 iPakkkakqslkkllgldafvLlknkrllvfflvslllavvlqiyyvfanafLtevakivvklasillslsqvaeilfiLtlpfflkrfGikkvll 277
                                                                                                                    
     KIR65660.1   - ------------------------------------------------------------------------------------------------   -
                    ................................................................................................ PP

  Nuc_H_symport 278 lslvaaalrfalfaygaddepvgvvlllLslivyG 312
                                           v ll+L+++++G
     KIR65660.1 109 ---------------------RQVPLLFLGMLLFG 122
                    .....................33445555555554 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 2.4e-05
  Nuc_H_symport 247 illslsqvaeilfiLtlpfflkrfGikkvlllslvaaalrfalfaygaddepvgvvlllLslivyGvaydffyitayvfvdkevpkdirasaqGlf 342
                    ++lsl       f  +++ ++ r+G + v+l +l    +  a+      ++p g+    ++l++ G  +    ++++    + vp d+r s qGl 
     KIR65660.1 301 VVLSLHIAGMYAFSPVVGWLTDRLGRRPVILGGLAVLLVACAVAGASGHHTP-GL---SVGLVLLGLGWSGTMVAGSTLLSESVPADVRPSVQGLS 392
                    6667666666667778999999999999999888777776666433323333.22...2345678*****************************98 PP

  Nuc_H_symport 343 lllvnGvGallgsilsgalvem 364
                     l + G+   +++ lsg ++++
     KIR65660.1 393 DL-TMGLAGAAAGALSGFVMQV 413
                    76.5677777888899977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 3004.40
//
Query:       KIR65661.1  [L=66]
Description: hypothetical protein TK50_09890 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-25   88.3   0.1    3.3e-25   88.2   0.1    1.0  1  DUF3046   Protein of unknown function (DUF3046)


Domain annotation for each model (and alignments):
>> DUF3046  Protein of unknown function (DUF3046)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.1   1.8e-29   3.3e-25       1      61 [.       1      63 [.       1      64 [. 0.97

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 1.8e-29
     DUF3046  1 MRlteFwelveeeFGsayarslardhvlselggrTaeeAleaGvdprdVWralcdaf..dvPe 61
                MRlt+Fw+++ee+FG++ya+s+a+d+vls+l+grT+e+Al  G +++ VWra+++a+  +vP+
  KIR65661.1  1 MRLTDFWARLEEAFGPGYAASIASDQVLSQLDGRTIEQALRSGEQAHVVWRAVVAAYpdRVPA 63
                ********************************************************9888997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 556.87
//
Query:       KIR65662.1  [L=348]
Description: recombinase RecA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.5e-143  477.0   2.4   1.8e-143  476.7   2.4    1.1  1  RecA      recA bacterial DNA recombination protein
    1.4e-09   37.7   0.3    5.9e-08   32.3   0.3    2.6  1  ATPase    KaiC
    5.8e-09   35.6   0.1    1.9e-08   33.9   0.1    1.7  1  Rad51     Rad51
    0.00027   20.9   0.0    0.00061   19.8   0.0    1.7  1  ATPase_2  ATPase domain predominantly from Archaea
     0.0009   19.0   0.0     0.0016   18.2   0.0    1.4  1  AAA_24    AAA domain
      0.002   17.7   0.8      0.048   13.2   0.8    2.2  1  AAA_25    AAA domain
     0.0075   16.7   0.0      0.013   15.9   0.0    1.4  1  AAA       ATPase family associated with various cellular acti
  ------ inclusion threshold ------
      0.014   15.8   0.1      0.024   15.0   0.1    1.3  1  AAA_16    AAA ATPase domain
      0.047   13.3   0.0      0.076   12.6   0.0    1.3  1  CobU      Cobinamide kinase / cobinamide phosphate guanyltran


Domain annotation for each model (and alignments):
>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  476.7   2.4  9.3e-147  1.8e-143       1     263 []       9     270 ..       9     270 .. 0.99

  Alignments for each domain:
  == domain 1  score: 476.7 bits;  conditional E-value: 9.3e-147
                 HHHHHHHHHHHHHH-TTSS--TTS--.-----EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEESS----HHHHH CS
        RecA   1 kaleaalkqiekkfGkgsimklgdekeklkvetissGslaldialGiGGlpkGriieiyGpessGkttlalhaiaeaqkkggvaafidaehaldpkyak 99 
                 kal+ al+qi+k+fGkgs+m+lg++   ++ ++i++Gs+ald+alG+GGlp+Gr++eiyGpessGktt+alha+a+aq++gg+aaf+daehaldp+yak
  KIR65662.1   9 KALDLALAQIDKQFGKGSVMRLGERP-VVQTSVIPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPEYAK 106
                 799*********************99.79********************************************************************** PP

                 HTT--GGG-EEE--SSHHHHHHHHHHHHTTT--SEEEEE-TTT---STT-----------HHHHHHHHHHHHHHHHHTTT--EEEEEEE---------- CS
        RecA 100 klGvdidellvsqpdtGeqaleiadalvrsgaidlivvdsvaalvpkaeieGemgdskvglqarlmsqalrkltgaisksntvvifinqirekiGvmfg 198
                 +lGvd+d llvsqpdtGeqaleiad+lvrsgaid+iv+dsvaalvp+aeieGemgds+vglqarlmsqalrk+tg+++++ t++ifinq+rekiGvmfg
  KIR65662.1 107 ALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFG 205
                 *************************************************************************************************** PP

                 -------HHHHHHH-SEEEEEEEES---------EEEEEEEEEEESSS----EEEEEEETTTEE- CS
        RecA 199 npetttGGralkfyasvrldvrrieeikekeevignktkvkvvknkvappfkeaeldilygeGis 263
                 +petttGGralkfyasvrldvrrie++k++ +v+gn+t+vkvvknkva+pfk+ae+di+yg+Gis
  KIR65662.1 206 SPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGNRTRVKVVKNKVAAPFKQAEFDIMYGKGIS 270
                 ***************************************************************97 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.3   2.9e-11   5.9e-08       1     195 [.      41     241 ..      41     270 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 2.9e-11
      ATPase   1 vktgIeglDeil.kgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenakslGwdlekleeegklaiidasesaeesaee 98 
                 ++tg   lD  l  gG+p+grvv i+G   +GKt++al+ +   a++ g    fv  e       e ak+lG+d+++l  ++  +  +a e a+     
  KIR65662.1  41 IPTGSIALDVALgVGGLPRGRVVEIYGPESSGKTTVALHAVA-NAQRAGGIAAFVDAEHALD--PEYAKALGVDTDALLVSQPDTGEQALEIAD----M 132
                 58888889999988***********************98555.5588798888888776554..58999********99884444444444443....2 PP

      ATPase  99 .kdkedle.elieelaeaikeikakrvviDsitglayeekeavaReilrqlvrvlkklgvTailvsekss........seeaaggygveefivdgvivL 187
                   ++ +++  +i+++a  + + +++  + Ds  gl    ++ ++ + lr+++ vl+++g+Tai++++ ++         e+++gg +++    +  ++L
  KIR65662.1 133 lVRSGAIDiIVIDSVAALVPRAEIEGEMGDSHVGL----QARLMSQALRKITGVLNNTGTTAIFINQLREkigvmfgsPETTTGGRALKF---YASVRL 224
                 42333443146788999999999999999999999....78888999999*****************99999999964444555555554...677888 PP

      ATPase 188 dlkeiee.........e 195
                 d+++ie+         +
  KIR65662.1 225 DVRRIESlkdgtdvvgN 241
                 88888876666665543 PP

>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.1   9.7e-12   1.9e-08      18     246 ..      40     262 ..      20     271 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 9.7e-12
                 EE--S-HHHHHHH.TSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHHHHTT--HHHHGGGEEEEE--STT CS
       Rad51  18 qlttGskklDelL.gGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveiaerykldkeevlenvayaRaytie 115
                  + tGs +lD  L  GG++ g + ei+G   sGkt ++      +q       + g a+++d+e ++ pe     a+  ++d++++l   +       +
  KIR65662.1  40 VIPTGSIALDVALgVGGLPRGRVVEIYGPESSGKTTVALHAVANAQR------AGGIAAFVDAEHALDPEY----AKALGVDTDALLVSQP-------D 121
                 389*******99955********************887665555553......346799**********85....77889***99996554.......6 PP

                 HHHHHHHHTHHHHHHS-EEEEEEETTTGGG.CH-----...--THHHHHHHHHHHHHHHHHHHHH--EEEEEEE-------.------------HHHHH CS
       Rad51 116 hqeellqqaaallaedkfallivDsvtaly.Rtdfsgr...gelakRqqklgkllrtLrkladefevavvitnqvvaqvdgqaalfsadpkkPigGlvl 210
                   e+ l+ a +l+ +  + ++++Dsv+al  R++ +g      +    + +++ lr+++ + ++ + + +  nq  ++++    +f + p+   gG+ l
  KIR65662.1 122 TGEQALEIADMLVRSGAIDIIVIDSVAALVpRAEIEGEmgdSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGV---MF-GSPETTTGGRAL 216
                 7777888888889999************86699987642114455566667888888888889999999999*****9998...55.6788899***** PP

                 HHH-SEEEEEEE-ST..........TEEEEEEES-SSS-S-EEEEE CS
       Rad51 211 ahasttRlalrkgkg..........eeRivkvvdsPnlpeleavfa 246
                    +++Rl +r+ +           ++R+  v +    p ++a f 
  KIR65662.1 217 KFYASVRLDVRRIESlkdgtdvvgnRTRVKVVKNKVAAPFKQAEFD 262
                 ********99876544445556665555555555555555555555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.1e-07   0.00061      22      67 ..      62     107 ..      58     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.1e-07
    ATPase_2  22 iyfiYGpegsGKtaLlkeiienledkdkyviyyialreesisklde 67 
                 ++ iYGpe+sGKt++  +++ n +  +    +++a +  + ++++ 
  KIR65662.1  62 VVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPEYAKA 107
                 677*********************9999999999988777766665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   8.2e-07    0.0016       4      78 ..      62     151 ..      59     166 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 8.2e-07
      AAA_24   4 kiliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfpdie..........swedfldevvelaaeladyktlviDtidele 78 
                  + iyGp+ +GKTt+a+++       g  ++f+d e+ l+  +a+ +  +           + e+ l+ ++ l +  a ++++viD++  l+
  KIR65662.1  62 VVEIYGPESSGKTTVALHAvanaqraGGIAAFVDAEHALDPEYAKALG-VDtdallvsqpdTGEQALEIADMLVRSGA-IDIIVIDSVAALV 151
                 6779*********************************66544444433.22578888555555555555555566666.9999999998876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.8   2.4e-05     0.048      28      56 ..      56      83 ..      51     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.4e-05
      AAA_25 28 gllpagelallaGapgtGKttlaldlala 56
                g lp+g ++ ++G++ +GKtt+al+ ++ 
  KIR65662.1 56 G-LPRGRVVEIYGPESSGKTTVALHAVAN 83
                4.5*********************98775 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.8e-06     0.013       3      95 ..      65     181 ..      63     201 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.8e-06
                 EESSTTSSHHHHH.HHHHHHH..................THEEEEEETTTCSSS...STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH..... CS
         AAA   3 lyGppGtGKTlla.kavakel..................gvefleisgsellsk...yvgesekkirelfkeakekakpsilfiDEidalaksr..... 74 
                 +yGp   GKT++a +ava+                     ++ l ++   ll       ge++ +i++++  +++ a   i++iD + al+++      
  KIR65662.1  65 IYGPESSGKTTVAlHAVANAQraggiaafvdaehaldpeYAKALGVDTDALL-VsqpDTGEQALEIADML--VRSGA-IDIIVIDSVAALVPRAeiege 159
                 79*********99467777743332222232222222222334444444444.12336667777777777..56777.89*************999444 PP

                 .TTCCCHHHHHHHHHHHHHHHH CS
         AAA  75 .sgseseeeervvnqLlteldg 95 
                   +s+ + + r+++q l+++ g
  KIR65662.1 160 mGDSHVGLQARLMSQALRKITG 181
                 3333334444555555555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   1.2e-05     0.024      22     140 ..      58     192 ..      47     198 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala............. 106
                 +r+++v ++G+  +GK++++ ++   ++++ggi++  ++++      +++ +a+al   +  + l +++++ e+  + e  +  ++             
  KIR65662.1  58 PRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHA-----LDPeYAKALGV-DTDALLVSQPDTGEQ--ALEIADMLVRsgaidiividsva 148
                 5668999*************8888899999887766666665.....44556666633.333333333222222..22211222223346666666444 PP

      AAA_16 107 ...avpelagaea........srllellkrllallsrderplvlv 140
                    + +e++g+          + + ++l+++   l +++  + ++
  KIR65662.1 149 alvPRAEIEGEMGdshvglqaRLMSQALRKITGVLNNTGT-TAIF 192
                 4442222222222444455534455555555555554344.5555 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.8e-05     0.076       3     122 ..      65     193 ..      63     210 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.8e-05
        CobU   3 vtGgarSGKSefAekla...eeskekvvYiATaealDeemaeRiarHrerR.paeWetveepldlaealkeeekkevvLvDcltlwltnllleeeaek. 96 
                 + G+  SGK ++A + +   +++++   ++ + +alD e+a+ +    +    ++ +t e+ l++a++l ++ + +++++D+++ ++ ++  e e  + 
  KIR65662.1  65 IYGPESSGKTTVALHAVanaQRAGGIAAFVDAEHALDPEYAKALGVDTDALlVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDs 163
                 78*************995544445667999999999********999988768999*************999999************988777664446 PP

        CobU  97 ....veekleeeveellealkelkatvvlV 122
                     + + +++++++++ +l+++ +t +++
  KIR65662.1 164 hvglQARLMSQALRKITGVLNNTGTTAIFI 193
                 777666677778888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2524.87
//
Query:       KIR65663.1  [L=259]
Description: RecX family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-26   92.9   0.3      9e-25   87.5   0.1    2.0  2  RecX      RecX family
  ------ inclusion threshold ------
      0.071   13.0   0.1       0.68    9.8   0.0    2.0  2  LpxI_N    LpxI N-terminal domain


Domain annotation for each model (and alignments):
>> RecX  RecX family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   5.7e-05      0.51      25      63 ..      77     115 ..      76     117 .. 0.94
   2 !   87.5   0.1     1e-28     9e-25       1     118 [.     104     223 ..     104     232 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.7e-05
                 -HHHHHHHHHHHHHHH----HHHHHHHHHTTT--HHHHH CS
        RecX  25 dDerfAesfvrsrlrsrgyGprrikqeLkqkGiseelie 63 
                 d+++ A++++ ++l+ r++ +  ++ +L ++Gisee+++
  KIR65663.1  77 DEAELAREICLRQLAVRPRTRAELASALAKRGISEEVSA 115
                 78999******************************9875 PP

  == domain 2  score: 87.5 bits;  conditional E-value: 1e-28
                 SGGGT--HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHH----HHHHHHHHHTTT--HHHHHHHHTTS-HHHH...HHHHHHHHHHHTTTS-HHHHHH CS
        RecX   1 LakkgfpeevieavierlkeeglldDerfAesfvrsrlrsrgyGprrikqeLkqkGiseelieqaleeldeeeq...arelaekklkklkkeedekekq 96 
                 Lak+g++eev + v++r+ e g +dD++fA+++v+sr + rg  +r++++eL+++G++ e++ +al+eldee++   ar+l+ +kl++ +  e ++  +
  KIR65663.1 104 LAKRGISEEVSAGVLDRYDEVGIIDDAAFARAWVSSRHAGRGLARRALANELRRRGVDGEVASEALDELDEETEaetARALVDRKLRTAR-GEPDTVFR 201
                 799****************************************************************7777777777***********95.5679**** PP

                 HHHHHHHHTT--HHHHHHHHHH CS
        RecX  97 klvrfLarrGFssevirevlke 118
                 +lv +Lar+G++ +v+ +++k+
  KIR65663.1 202 RLVGMLARKGYPPGVAIRAVKD 223
                 ***************9999985 PP

>> LpxI_N  LpxI N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   7.6e-05      0.68      52     128 ..      95     171 ..      76     172 .. 0.86
   2 ?    1.7   0.0     0.025   2.2e+02      87     117 ..     178     212 ..     162     223 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 7.6e-05
      LpxI_N  52 gqlgklikaLkregvtevvmaGkvekpklldlrpDlralkllaklkdrgddalLravveelekeGikvlgateilpe 128
                     +l +aL ++g++e v aG + + +   +  D+ +++ + + +++g     ra+++el ++G+    a+e l+e
  KIR65663.1  95 RTRAELASALAKRGISEEVSAGVLDRYDEVGIIDDAAFARAWVSSRHAGRGLARRALANELRRRGVDGEVASEALDE 171
                 55678899************************************99999999999**********988777777776 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.025
      LpxI_N  87 lralkllak....lkdrgddalLravveelekeGi 117
                 +++++ l       ++ + d+++r++v +l+++G 
  KIR65663.1 178 AETARALVDrklrTARGEPDTVFRRLVGMLARKGY 212
                 4444444443654446899***********99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.30s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1889.35
//
Query:       KIR65664.1  [L=588]
Description: ribonuclease Y [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.8e-20   71.2  48.6    7.8e-20   71.2  48.6    2.7  3  DUF3552      Domain of unknown function (DUF3552)
    3.3e-16   59.6   2.5    3.3e-16   59.6   2.5    2.8  2  HD           HD domain
    6.7e-06   25.9   0.0      2e-05   24.3   0.0    1.8  1  KH_1         KH domain
    0.00045   20.0   1.7     0.0011   18.7   0.2    2.5  2  KH_4         KH domain
  ------ inclusion threshold ------
       0.49   11.0   6.7       0.13   12.9   1.1    2.5  2  DUF3776      Protein of unknown function (DUF3776)


Domain annotation for each model (and alignments):
>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3      0.94   3.4e+03       4      29 ..       8      33 ..       6      38 .. 0.60
   2 ?   -6.3  10.8         5   1.8e+04      22      69 ..      51      97 ..      42     100 .. 0.74
   3 !   71.2  48.6   2.2e-23   7.8e-20      23     200 ..      95     272 ..      86     273 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.94
     DUF3552  4 ilaivalvvglvvgylvrkkiaekki 29
                +l +v l+v +vvg ++   ++ +++
  KIR65664.1  8 LLGVVLLLVLVVVGAVLVGVRTMRRL 33
                55667777777777766555555554 PP

  == domain 2  score: -6.3 bits;  conditional E-value: 5
     DUF3552 22 kkiaekkiaeAeeeAkkiieeAkkeAeakkkealleakeeihklreel 69
                ++++ + +++A  e ++ i+ Ak  A a + ea   ak e++ +r+e+
  KIR65664.1 51 QEQSLAALRTAADEVNSTIDVAKSAASAARAEAA-AAKAEAKAARAEA 97
                3444456677778888889999999999998885.6899999999886 PP

  == domain 3  score: 71.2 bits;  conditional E-value: 2.2e-23
     DUF3552  23 kiaekkiaeAeeeAkkiieeAkkeAeakkkealleakeeihklreelekelkerrnelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqs 121
                   a++ +++A++eA+ ++e A+k+Aea  ++  + a+    +  + l + ++e+ +e++r   R+ ++e    +  e l ++e++l++    l+++e+ 
  KIR65664.1  95 AEARRVLDDARAEADTVLERAHKQAEADAEQLRTAARRSGEREVAVLAATTREQAAEVERRAARMDERERLHTEEVERLADRERQLTAASAALAARESA 193
                 4455566778888888888888888888888888888888888888888889*********************************************** PP

     DUF3552 122 leekeeeleelveeqrqeLerisgLtkeeAkeilleeveeelkheaAkmikeieeeakeeAdkkAkeiialAiQrcAad 200
                 l e+e+ + e  e++r+eLer++gLt++ A++ l+e +e+++k+eaA ++++ie++a+++A+++A++i+++AiQr+A++
  KIR65664.1 194 LAEREQAVAEAEEQRRRELERVAGLTADAARAELIEVIETQAKREAALLVRDIESDARNTAEQRARHIVVDAIQRVASE 272
                 *****************************************************************************98 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   1.1      0.57   2.1e+03      54      74 ..     161     181 ..     113     246 .. 0.64
   2 !   59.6   2.5   9.1e-20   3.3e-16       2     120 ..     405     495 ..     404     497 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.57
                 TCCHHHHHHHHHHHHHHHHHH CS
          HD  54 ekflaHekvgaeilrevekrl 74 
                 e+++ H+++ ++++ ++  + 
  KIR65664.1 161 ERERLHTEEVERLADRERQLT 181
                 334445555554444444444 PP

  == domain 2  score: 59.6 bits;  conditional E-value: 9.1e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH CS
          HD   2 leHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgldledvaklirehheswegkkrprg 100
                 l H +e+a++a+ +a +l    d+ +++  a lHDiGk ++++           + +H+++ga ++r++++++     dv+++i++hh+  +       
  KIR65664.1 405 LKHLVETAHIAGIMAAELR--LDVPTIKRSAFLHDIGKALTHE----------VEGSHAIIGADLARKYGESE-----DVVHAIEAHHNEVP------- 479
                 78*****************..*******************886..........6679****************.....**************....... PP

                 HHCCTSCHHHHHHHHHHHHH CS
          HD 101 laerqlslearivklaDrla 120
                     ++++ea + ++ D+++
  KIR65664.1 480 ----PQTIEAVLTQASDACS 495
                 ....*************997 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   5.6e-09     2e-05       4      39 ..     282     319 ..     279     330 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 5.6e-09
                 EEEGGG.HHHHHHTGGGHHHHHHHHHHT-EEEEES.ST CS
        KH_1   4 ilvPss.lvgriIGkgGsnIkeIreetgakIkvpk.se 39 
                 +++P + + griIG+ G+nI+  ++ tg++  +++ +e
  KIR65664.1 282 LHLPGDeMKGRIIGREGRNIRAFESVTGVNLIIDDtPE 319
                 577866599*********************99885444 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   3.2e-07    0.0011       7      57 ..     257     307 ..     251     314 .. 0.78
   2 ?   -1.7   0.1      0.74   2.7e+03       3      29 ..     559     584 ..     557     587 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.2e-07
        KH_4   7 ilkalvddpeevevteeeeeeeveielnveged.lGrvIGkrGrtldAlqyl 57 
                  ++ +v   +  +v  e+++e+v+  l++ g++ +Gr+IG++Gr+++A   +
  KIR65664.1 257 RARHIV-VDAIQRVASEQTAESVVSVLHLPGDEmKGRIIGREGRNIRAFESV 307
                 566666.34455777777888999999**999956*************8766 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.74
        KH_4   3 lvedilkalvddpeevevteeeeeeev 29 
                 ++++i ++l  +p +++vt+ +e++ +
  KIR65664.1 559 VAKQIEEELT-YPGQIRVTVVRESRVT 584
                 5566666664.8999****99766554 PP

>> DUF3776  Protein of unknown function (DUF3776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.2      0.38   1.3e+03      23      62 ..      40      75 ..      28     100 .. 0.66
   2 ?   12.9   1.1   3.6e-05      0.13       6      69 ..     161     222 ..     156     238 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.38
     DUF3776 23 gklalssEkgkqSEkslskkrkedkenisenkrerLnkit 62
                ++ a ++Ek +  E+sl+  r    e  s ++ +   k +
  KIR65664.1 40 EDPAYIAEKDR-QEQSLAALRTAADEVNSTIDVA---KSA 75
                55668889984.5888888888888888888877...333 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.6e-05
     DUF3776   6 eektsktekrteqpdkegklalssEkgkqSEkslskkrkedkenisenkrerLnkitGlysvdt 69 
                 e + ++te + +  d+e +l   s  + + E++l+++++   e   +  re L++++Gl  +d+
  KIR65664.1 161 ERERLHTEEVERLADRERQLTAASAALAARESALAEREQAVAEAEEQRRRE-LERVAGL-TADA 222
                 567899*********************************************.*******.7775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2092  (0.116682); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.44
# Mc/sec: 3974.21
//
Query:       KIR65665.1  [L=218]
Description: amino acid ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.4e-17   61.5  16.1    1.5e-16   60.7  16.1    1.4  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7  16.1   8.4e-21   1.5e-16       2     184 ..      34     215 ..      33     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 8.4e-21
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrw 95 
                   ++lG l++   +++   l+ +  +++++++ +P  +++ +lv+++  l++  +++ +++i+l++++a++v+ ++r++++++ +++ eaaralG+s  
    KIR65665.1  34 LVLGTLLGamrVSPVPALRAFGATYVNIVRNTPLTLVFAFLVFAVPKLDVNIDYFPSACIALTVYTAAFVCEVIRSGVNTVGTGQAEAARALGMSFA 130
                   6899999999999*****************************9999**9************************************************ PP

  BPD_transp_1  96 qifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprvr 184
                   q++  +vlP+al+ +++ ++ +f+++l++++++  +     l    + a+++       ++++l ++i +l+l+l + +lqr+l+++ r
    KIR65665.1 131 QVLTLIVLPQALRAMVPPMMSVFIAMLKNTTIAAGFS---VLEAGAIPAYMAERGEPQ-FAVLLWITIGFLILILPLVALQRFLERKWR 215
                   ***************************9998887666...244444444444444433.5999***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1713.10
//
Query:       KIR65666.1  [L=311]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-50  171.6   1.3    2.1e-50  171.3   1.3    1.2  1  SBP_bac_3        Bacterial extracellular solute-binding prote
  ------ inclusion threshold ------
       0.03   14.2   0.5        5.1    7.0   0.0    2.4  2  NMT1             NMT1/THI5 like
      0.034   13.8   0.1      0.098   12.2   0.0    1.7  2  Phosphonate-bd   ABC transporter, phosphonate, periplasmic su
      0.083   13.1   0.0       0.23   11.7   0.0    1.9  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.3   1.3   4.6e-54   2.1e-50       1     220 [.      75     293 ..      75     298 .. 0.95

  Alignments for each domain:
  == domain 1  score: 171.3 bits;  conditional E-value: 4.6e-54
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-...EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgv...kvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkda 96 
                 ++vgv+ d p  +ykd++g+  Gfd+++a+ ia  lgv   k+e++++  +++ +a+k g++D  +++ +it++R+  + F  pyf+agq llvrk++ 
  KIR65666.1  75 VTVGVKFDQPNLGYKDAQGKRCGFDIEIAQYIASTLGVdpaKIEYKEIASANRETAIKGGEIDYYVGTYSITDKRKNDISFAGPYFVAGQDLLVRKDE- 172
                 689**99*******************************888899999999*********************************************765. PP

                 HGTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC.TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  97 skissiksladLkgkkvgvqagstaeellkeelkk.gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrkg 194
                    + i++ + Lkgkkv+  +gst  + ++ e      +ivef+t++e++ +L +++vdav +d+++l++++++npd+ +v+ ++p+s+e+y+i+++k+
  KIR65666.1 173 ---TAITGKDTLKGKKVCSATGSTPIQKVRDEGLTePENIVEFKTYSECVSQLLDKKVDAVTTDDAILKGYAAQNPDELKVV-GQPFSTEKYGIGLPKD 267
                 ...4677777**************99999997766766899*****************************************.**************** PP

                 THHHHHHHHHHHHHHHHTTHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 195 dseLrkainkalaelkadgtlakise 220
                 d++Lr+ +n+ +++  +dgt++ki++
  KIR65666.1 268 DKALRDYVNDQIEAAAKDGTWQKIYD 293
                 ************************97 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0011       5.1      88     149 ..      88     144 ..      75     152 .. 0.83
   2 ?    5.2   0.1    0.0041        18      77     145 ..     166     231 ..     162     262 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0011
                 GGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEECEET CS
        NMT1  88 pkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaaiggye 149
                  kD +Gkr g+        + + + ++ g+dp++++  ++   +  +a+  g++D ++g+y 
  KIR65666.1  88 YKDAQGKRCGFDI-----EIAQYIASTLGVDPAKIEYKEIASANRETAIKGGEIDYYVGTYS 144
                 6899999999887.....4566677777*********9999999999***********9886 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0041
                 EEEECCC-.-SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEE CS
        NMT1  77 livlkdsg.ikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaai 145
                 l+v+kd+  i+    LkGk++       +++ ++++  +   +p+ +   ++ +++ +++ll++kvDa++
  KIR65666.1 166 LLVRKDETaITGKDTLKGKKVCSAT---GSTPIQKVRDEGLTEPENIVEFKT-YSECVSQLLDKKVDAVT 231
                 678888887999999*****99877...677777766666668888777788.888899********998 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.89     4e+03      19      52 ..     102     137 ..     101     143 .. 0.70
   2 ?   12.2   0.0   2.2e-05     0.098      90     186 ..     167     252 ..     161     262 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.89
                     HHHHHHHHHSSE...EEEE--SSHHHHHHHHHTTS-S CS
  Phosphonate-bd  19 ladyLseelGve...velvvatdyaavvealragqvD 52 
                     +a+y+ + lGv+   +e++  ++ a  + a++ g++D
      KIR65666.1 102 IAQYIASTLGVDpakIEYKEIAS-ANRETAIKGGEID 137
                     78999999998876666666655.5556666666666 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.2e-05
                     EEETTSS.--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT--HHHHSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH-HHHHTTEE CS
  Phosphonate-bd  90 ivradsd.iqsledLkgktiafvspsStsGylvpaalLvkeagldpeddfsevfsgshdaavlavlsgdadaaavsadaledlvaegpedkdelr 183
                     +vr+d++ i+  + Lkgk+++ +   St    v      ++ gl+  +  + v  +++++ v ++l++++da ++++ +l+ ++a++   +del+
      KIR65666.1 167 LVRKDETaITGKDTLKGKKVCSAT-GSTPIQKV------RDEGLTEPE--NIVEFKTYSECVSQLLDKKVDAVTTDDAILKGYAAQN---PDELK 249
                     677877657777778888888754.33333333......455555444..34567889**************************995...78999 PP

                     EEE CS
  Phosphonate-bd 184 via 186
                     v+ 
      KIR65666.1 250 VVG 252
                     986 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.1e-05      0.23      77     114 ..     134     171 ..      90     172 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.1e-05
                      TS-SEE-SS-B--HHHHTTSEEESESEEE-EEEEEESX CS
  Lig_chan-Glu_bd  77 kkadlavapltitaeReevvdFtkpfmelgisilikkp 114
                      +++d  v+  +it +R++ + F+ p+   g  +l++k 
       KIR65666.1 134 GEIDYYVGTYSITDKRKNDISFAGPYFVAGQDLLVRKD 171
                      689999****************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2013.82
//
Query:       KIR65667.1  [L=251]
Description: glutamate ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-34  119.4   0.0      2e-34  119.0   0.0    1.1  1  ABC_tran        ABC transporter
    6.7e-12   45.8   0.0      1e-05   25.5   0.0    2.1  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    7.3e-09   35.4   0.4    0.00011   21.8   0.0    2.2  2  SMC_N           RecF/RecN/SMC N terminal domain
      4e-05   24.1   0.4    7.3e-05   23.2   0.4    1.7  1  AAA_16          AAA ATPase domain
    0.00011   22.4   0.0    0.00027   21.2   0.0    1.8  1  AAA_22          AAA domain
    0.00012   21.7   0.0    0.00027   20.6   0.0    1.5  1  AAA_29          P-loop containing region of AAA domain
    0.00018   20.4   0.4       0.38    9.5   0.1    2.6  2  ABC_ATPase      Predicted ATPase of the ABC class
    0.00053   20.6   0.0      0.001   19.6   0.0    1.5  1  AAA_18          AAA domain
     0.0017   18.1   0.1     0.0032   17.2   0.1    1.6  1  AAA_30          AAA domain
      0.003   17.5   0.1     0.0064   16.4   0.1    1.5  1  RsgA_GTPase     RsgA GTPase
     0.0048   17.1   0.1      0.013   15.7   0.0    1.7  2  AAA_33          AAA domain
     0.0052   17.3   0.0     0.0084   16.6   0.0    1.2  1  AAA_23          AAA domain
     0.0093   16.2   0.3       0.03   14.6   0.3    2.1  1  AAA_28          AAA domain
     0.0097   15.7   0.1      0.029   14.2   0.0    1.7  2  ATP_bind_1      Conserved hypothetical ATP binding protein
  ------ inclusion threshold ------
      0.012   14.3   0.0       0.88    8.1   0.0    2.0  2  AAA_13          AAA domain
      0.028   14.0   0.1        1.3    8.5   0.0    2.3  2  CobU            Cobinamide kinase / cobinamide phosphate guan
      0.033   13.9   0.0      0.057   13.2   0.0    1.4  1  PduV-EutP       Ethanolamine utilisation - propanediol utilis
      0.038   13.6   0.0      0.088   12.4   0.0    1.6  1  AAA_27          AAA domain
       0.04   13.6   0.1      0.066   12.9   0.1    1.3  1  Cytidylate_kin  Cytidylate kinase
      0.042   13.6   0.0      0.089   12.5   0.0    1.5  1  IstB_IS21       IstB-like ATP binding protein
      0.044   14.2   0.0       0.31   11.5   0.0    2.1  2  AAA             ATPase family associated with various cellula
      0.047   13.8   0.1       0.11   12.6   0.1    1.9  1  MMR_HSR1        50S ribosome-binding GTPase
      0.054   13.4   0.0        0.1   12.5   0.0    1.4  1  ATPase_2        ATPase domain predominantly from Archaea
      0.063   13.0   0.0       0.27   10.9   0.0    1.8  2  AAA_15          AAA ATPase domain
      0.064   13.5   0.3       0.57   10.5   0.3    2.1  1  SbcCD_C         Putative exonuclease SbcCD, C subunit
       0.07   12.7   0.0        0.2   11.2   0.0    1.7  2  AAA_25          AAA domain
      0.076   12.9   0.0       0.16   11.9   0.0    1.5  1  NACHT           NACHT domain
       0.08   12.7   0.0       0.13   12.0   0.0    1.3  1  AAA_24          AAA domain
      0.094   11.9   0.0       0.14   11.3   0.0    1.2  1  NB-ARC          NB-ARC domain
       0.16   12.4   0.0        0.3   11.5   0.0    1.5  1  RNA_helicase    RNA helicase
       0.16   12.0   0.0       0.59   10.1   0.0    2.0  2  AAA_5           AAA domain (dynein-related subfamily)
       0.32    9.8   0.5        0.6    8.9   0.1    1.6  2  Adeno_IVa2      Adenovirus IVa2 protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0   0.0   3.6e-37     2e-34       1     137 []      26     174 ..      26     174 .. 0.90

  Alignments for each domain:
  == domain 1  score: 119.0 bits;  conditional E-value: 3.6e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren..............esde 83 
                 l++vsl++ +ge+v+++G++G+GKStL++++ +l+   +G+i++dg++l    + l +lr+e+g+++q  +lf ++t+ en              +++e
  KIR65667.1  26 LQDVSLSVGRGEVVVVIGPSGSGKSTLCRAINRLEPISSGTITFDGTPLPAegKALARLRSEVGMVFQSFNLFAHKTILENvtlgpvkvrkekpaAARE 124
                 789**********************************************99999*********************************998886655555 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +  ++l+++g+ + +d    + p++LSgGq+qr a+aral+ +pk +l+DEpt+
  KIR65667.1 125 RGLALLDRVGIANQAD----KYPAQLSGGQQQRAAIARALAMQPKAMLFDEPTS 174
                 5666666666666444....556*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.9e-06    0.0016       1      22 [.      38      59 ..      38      88 .. 0.79
   2 !   25.5   0.0   1.8e-08     1e-05     234     297 ..     143     203 ..     129     207 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.9e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                + v+iGp gsGKS+L +a+  l
  KIR65667.1 38 VVVVIGPSGSGKSTLCRAINRL 59
                579****************988 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 1.8e-08
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 +++lS G+++ +a++ al+ ++   +  l+DEp + L+P+++ ++le++ +l+r g   +++TH
  KIR65667.1 143 PAQLSGGQQQRAAIARALAMQP---KAMLFDEPTSALDPEMVGEVLEVMTSLARDGMTMVVVTH 203
                 5789*******77777777777...66***************************99999***** PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1    0.0002      0.11      25      44 ..      37      56 ..      27      59 .. 0.88
   2 !   21.8   0.0   1.9e-07   0.00011     135     207 ..     138     213 ..      79     224 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0002
                SEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAi 44
                ++ +++Gp GSGKs l+ Ai
  KIR65667.1 37 EVVVVIGPSGSGKSTLCRAI 56
                5789**************99 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 1.9e-07
                 T......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SC CS
                 x......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadk 207
                 +      +LSgG+++ +a+a  +A+q    ++ +l+De  +aLD + v +v e++ +   + + ++v++++ ++ ++a +
  KIR65667.1 138 QadkypaQLSGGQQQRAAIARALAMQP---KA-MLFDEPTSALDPEMVGEVLEVMTSLARDgMTMVVVTHEMGFARHAAN 213
                 25555559*************999875...44.589*******************987766599999***9999888744 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.4   1.3e-07   7.3e-05      20      50 ..      32      61 ..      23     228 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.3e-07
      AAA_16 20 rsgrpelvllsGesGvGKsslvrellralek 50
                + gr+e+v+++G+sG+GKs+l r++ r le 
  KIR65667.1 32 SVGRGEVVVVIGPSGSGKSTLCRAINR-LEP 61
                447789******************995.443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.8e-07   0.00027       6      43 ..      37      67 ..      33     208 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4.8e-07
      AAA_22  6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevv 43
                 ++vv+G+sG+GK+tl+r + +  ++       +++++
  KIR65667.1 37 EVVVVIGPSGSGKSTLCRAINRLEPI-------SSGTI 67
                5789***************9998876.......44444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   4.8e-07   0.00027      14      44 ..      28      58 ..      23      60 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4.8e-07
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTllDAiqa 44
                + ++++ + ++++++GpsGsGKSTl  Ai+ 
  KIR65667.1 28 DVSLSVGRGEVVVVIGPSGSGKSTLCRAINR 58
                456666655599*************988865 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0017      0.95     242     266 ..      33      58 ..      29      59 .. 0.88
   2 !    9.5   0.1   0.00069      0.38     323     353 ..     146     176 ..     140     242 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0017
                 E-SS.EEEEEE-TTSSHHHHHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAlek 266
                 + +G v++++G+   GKsTL +A+++
  KIR65667.1  33 VGRGeVVVVIGPSGSGKSTLCRAINR 58 
                 667889*****************975 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00069
                 --HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase 323 ASGStsqAanimealeagakllLiDEDtsAt 353
                  SG   q a+i++al ++ k++L+DE tsA 
  KIR65667.1 146 LSGGQQQRAAIARALAMQPKAMLFDEPTSAL 176
                 5999*************************96 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.8e-06     0.001       1      24 [.      39      62 ..      39     110 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.8e-06
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf 24
                +++ G++G+GK+tl++++++++ +
  KIR65667.1 39 VVVIGPSGSGKSTLCRAINRLEPI 62
                789***************998644 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   5.8e-06    0.0032      18      79 ..      36     101 ..      29     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.8e-06
      AAA_30  18 drvavltGpAGtGKttalkalreaweaa.g...grviglAptgkaAkvLaeelgieastiakllkr 79 
                   v+v+ Gp G+GK+t+ +a++++   + g   ++   l  +gka ++L+ e+g+  ++ + + ++
  KIR65667.1  36 GEVVVVIGPSGSGKSTLCRAINRLEPISsGtitFDGTPLPAEGKALARLRSEVGMVFQSFNLFAHK 101
                 4599*****************999888844444444578889999999999999866666655544 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.1e-05    0.0064      98     121 ..      35      58 ..      24      70 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.1e-05
                  TTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallp 121
                  +++++v++G+SG GKStL  a++ 
   KIR65667.1  35 RGEVVVVIGPSGSGKSTLCRAINR 58 
                  5699**************877764 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.3e-05     0.013       1      19 [.      38      56 ..      38      73 .. 0.89
   2 ?   -2.0   0.0       6.5   3.6e+03      76      78 ..     170     172 ..     131     215 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.3e-05
      AAA_33  1 lvllvGlpGsGKstlaerl 19
                +v+++G++GsGKstl + +
  KIR65667.1 38 VVVVIGPSGSGKSTLCRAI 56
                89*************9865 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 6.5
      AAA_33  76 dat 78 
                 d +
  KIR65667.1 170 DEP 172
                 333 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.5e-05    0.0084       6      39 ..      19      56 ..      12      58 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.5e-05
      AAA_23  6 nfrsf...rdqeidFsk.gltlItGpNGaGKTTildAi 39
                +f+++   +d+++  ++  +++++Gp G+GK+T+ +Ai
  KIR65667.1 19 HFGPLhvlQDVSLSVGRgEVVVVIGPSGSGKSTLCRAI 56
                677777667777777663699****************9 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3   5.3e-05      0.03       2      22 ..      39      59 ..      38     214 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.3e-05
      AAA_28  2 ivitGgestGKTtlleaLaar 22
                +v++G++++GK+tl++a+++ 
  KIR65667.1 39 VVVIGPSGSGKSTLCRAINRL 59
                8***************99854 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   5.1e-05     0.029       1      19 [.      41      59 ..      41      69 .. 0.88
   2 ?   -1.5   0.0       3.2   1.8e+03     122     130 ..     211     219 ..     166     236 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.1e-05
  ATP_bind_1  1 vvGpaGsGKttfvgalsei 19
                v+Gp GsGK+t+++a++ +
  KIR65667.1 41 VIGPSGSGKSTLCRAINRL 59
                89************99875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
  ATP_bind_1 122 falvvvyLv 130
                  a  v++++
  KIR65667.1 211 AANRVIFMA 219
                 222334444 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0016      0.88      21      40 ..      41      60 ..      36     121 .. 0.83
   2 ?    4.4   0.0     0.021        12     528     580 ..     165     214 ..     156     246 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0016
      AAA_13 21 iYGwNGaGKTtLSrllrsle 40
                + G  G+GK+tL+r+++ le
  KIR65667.1 41 VIGPSGSGKSTLCRAINRLE 60
                66899************996 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.021
      AAA_13 528 kivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkn 580
                 k   +D P S LD +++  v   + s +    +   + + TH + f + + ++
  KIR65667.1 165 KAMLFDEPTSALDPEMVGEVLEVMTSLA---RDGMTMVVVTHEMGFARHAANR 214
                 55689**********************9...777789999*******999886 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1       0.1        56       1      16 [.      39      54 ..      39      65 .. 0.85
   2 ?    8.5   0.0    0.0024       1.3      71     134 ..     150     213 ..     132     222 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.1
        CobU  1 ilvtGgarSGKSefAe 16
                ++v+G++ SGKS++  
  KIR65667.1 39 VVVIGPSGSGKSTLCR 54
                579*********9865 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0024
        CobU  71 ekkevvLvDcltlwltnllleeeaekveekleeeveellealkelkatvvlVsnEvglgvvpen 134
                 +++++++  +l++  + +l++e +++ + ++  ev e++++l++  +t+v+V+ E+g+    +n
  KIR65667.1 150 QQQRAAIARALAMQPKAMLFDEPTSALDPEMVGEVLEVMTSLARDGMTMVVVTHEMGFARHAAN 213
                 4456777777778888889988888899999**************************8766665 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0    0.0001     0.057       4      25 ..      39      60 ..      36      70 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.0001
   PduV-EutP  4 illiGkvgsGKttLtqalkgee 25
                +++iG++gsGK tL++a++  e
  KIR65667.1 39 VVVIGPSGSGKSTLCRAINRLE 60
                899***************9765 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00016     0.088      17      49 ..      27      59 ..      18      60 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00016
      AAA_27 17 rsldfsaeeadlhliyGpNEAGKstalrAisdl 49
                + +++s ++ ++ +++Gp  +GKst+ rAi++l
  KIR65667.1 27 QDVSLSVGRGEVVVVIGPSGSGKSTLCRAINRL 59
                45667777999*******************987 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   0.00012     0.066       4      19 ..      42      57 ..      39      66 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
                    E-STTSSHHHHHHHHH CS
  Cytidylate_kin  4 DGPagsGKssvarala 19
                     GP+gsGKs+++ra+ 
      KIR65667.1 42 IGPSGSGKSTLCRAIN 57
                    5************986 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00016     0.089      44      68 ..      33      57 ..      25      69 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00016
   IstB_IS21 44 iekkenivllGpsGvGKshlaialg 68
                + + e +v++GpsG GKs l  a+ 
  KIR65667.1 33 VGRGEVVVVIGPSGSGKSTLCRAIN 57
                568899**************99986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00055      0.31       1      19 [.      39      57 ..      39      97 .. 0.89
   2 ?    0.6   0.0       1.3   7.2e+02      45      74 ..     151     179 ..     120     230 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00055
                EEEESSTTSSHHHHHHHHH CS
         AAA  1 vllyGppGtGKTllakava 19
                v+++Gp G GK++l++a+ 
  KIR65667.1 39 VVVIGPSGSGKSTLCRAIN 57
                6799*************95 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHTSTSEEEEEETGGGHHHHH CS
         AAA  45 kirelfkeakekakpsilfiDEidalaksr 74 
                 + r+ +++a ++ +p+ +++DE  +    +
  KIR65667.1 151 QQRAAIARALAM-QPKAMLFDEPTSALDPE 179
                 334444444333.47777777755554444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   0.00019      0.11       2      21 ..      39      58 ..      38     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00019
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                v+++G + +GKStL +a+ +
  KIR65667.1 39 VVVIGPSGSGKSTLCRAINR 58
                89**************9965 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00018       0.1      17      40 ..      33      56 ..      27      69 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00018
    ATPase_2 17 repneiyfiYGpegsGKtaLlkei 40
                 ++ e++++ Gp gsGK++L + i
  KIR65667.1 33 VGRGEVVVVIGPSGSGKSTLCRAI 56
                56789***************9865 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00049      0.27      15      46 ..      27      59 ..      25     105 .. 0.85
   2 ?   -0.5   0.0       1.4     8e+02     326     364 ..     166     203 ..     143     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00049
      AAA_15 15 kdveidlsee.ltvliGkNnsGKSsilealdlF 46
                +dv++++    + v+iG+ +sGKS++ +a++ +
  KIR65667.1 27 QDVSLSVGRGeVVVVIGPSGSGKSTLCRAINRL 59
                5555555555699*****************865 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.4
      AAA_15 326 illiEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                   l++EP   L p++  ++ + + +la+d+    ++ TH
  KIR65667.1 166 AMLFDEPTSALDPEMVGEVLEVMTSLARDGM-TMVVVTH 203
                 4799**************************7.6777777 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3     0.001      0.57      32      89 ..     145     189 ..     131     190 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.001
     SbcCD_C  32 tlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 +lSGG++q        aa+a ++        +++ +++DE  s lD+e++ ++le+++
  KIR65667.1 145 QLSGGQQQR-------AAIARALAM------QPKAMLFDEPTSALDPEMVGEVLEVMT 189
                 566666632.......333333333......36779******************9985 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00035       0.2      31      50 ..      34      53 ..      25      57 .. 0.91
   2 ?   -2.8   0.0       7.2     4e+03     165     188 ..     180     203 ..     165     205 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00035
      AAA_25 31 pagelallaGapgtGKttla 50
                 +ge+++++G++g+GK+tl+
  KIR65667.1 34 GRGEVVVVIGPSGSGKSTLC 53
                689***************97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.2
      AAA_25 165 v.galvealeriarrtgaavllvhH 188
                 + g+++e + ++a r g + ++v H
  KIR65667.1 180 MvGEVLEVMTSLA-RDGMTMVVVTH 203
                 3377777777774.56677777776 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00029      0.16       2      20 ..      38      56 ..      37      59 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00029
                CEEEEC-TTTCHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkl 20
                +v++ G++GsGK+tL + +
  KIR65667.1 38 VVVVIGPSGSGKSTLCRAI 56
                89*************9987 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00023      0.13       4      22 ..      38      56 ..      35      70 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00023
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 ++++Gpsg+GK+tl++ +
  KIR65667.1 38 VVVVIGPSGSGKSTLCRAI 56
                799************9877 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00026      0.14      21      43 ..      37      59 ..      24      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00026
                EEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 21 lvvalvGmgGvGKttlakqilnk 43
                 vv + G  G+GK+tl + i++ 
  KIR65667.1 37 EVVVVIGPSGSGKSTLCRAINRL 59
                48999*************99975 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00054       0.3       1      18 [.      39      56 ..      39      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00054
  RNA_helicase  1 iwlyGpsgeGKStlakeL 18
                  +++ Gpsg GKStl++ +
    KIR65667.1 39 VVVIGPSGSGKSTLCRAI 56
                  6899***********994 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0     0.001      0.59       2      22 ..      39      59 ..      38      69 .. 0.88
   2 ?   -2.2   0.0       6.9   3.9e+03      81      89 ..     180     188 ..     148     227 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.001
                EEEE--SSSSHHHHHHHGGGG CS
       AAA_5  2 vlLvGppGtgKselaerlaaa 22
                v+++Gp+G+gKs+l + + ++
  KIR65667.1 39 VVVIGPSGSGKSTLCRAINRL 59
                789***********9998765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.9
                 HHHHHHHHH CS
       AAA_5  81 vlnsLlsll 89 
                 +++++l ++
  KIR65667.1 180 MVGEVLEVM 188
                 444443332 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1    0.0011       0.6      80     107 ..      30      56 ..      23      70 .. 0.76
   2 ?   -2.2   0.1       2.5   1.4e+03     235     255 ..     195     215 ..     189     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
  Adeno_IVa2  80 slnyglqPviGviyGPtGsGksqllrnl 107
                 sl +g+  v+ v+ GP GsGks l r++
  KIR65667.1  30 SLSVGRGEVV-VVIGPSGSGKSTLCRAI 56 
                 5666666665.667************97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.5
  Adeno_IVa2 235 gfsvlvvlhnlnPrsdiagni 255
                 g +++vv h++   +  a+ +
  KIR65667.1 195 GMTMVVVTHEMGFARHAANRV 215
                 789********9998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 1610.65
//
Query:       KIR65668.1  [L=329]
Description: segregation protein A [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-20   73.5   0.7    5.4e-20   71.9   0.1    2.2  2  AIRS      AIR synthase related protein, N-terminal domain
    1.1e-13   51.6   0.3    2.1e-13   50.7   0.3    1.5  1  AIRS_C    AIR synthase related protein, C-terminal domain


Domain annotation for each model (and alignments):
>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.1     6e-24   5.4e-20       1      94 []      49     156 ..      49     156 .. 0.95
   2 ?   -1.7   0.0      0.51   4.6e+03      53      53 ..     208     208 ..     172     248 .. 0.58

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 6e-24
                 SSSEE........EEEEEEEE.EECCTCCCCHHHHHHHHHHHHHHTTTEEEEEEEEEEEEC.......HHHHHHHHHHHHHHHTT-EEEEEEEEEESSE CS
        AIRS   1 dDaav........vvttdshnrpvlvepvhfiGakavavnlsDlaamGArPlalllslalp.......wleevvrglaeaaeelgvplvgGdtsfsnep 84 
                 dDaav        +vtt ++++pv+ + ++  G++a+a++lsD++amG++Pl++l+ l++p        ++ev+rg ++ a+e+g++l+gG++  +++p
  KIR65668.1  49 DDAAVvrldertgLVTTADFFTPVVDDAYDW-GRIAAANALSDVYAMGGTPLVALNLLCWPrerlpleLAREVLRGGQDVAREAGCHLAGGHSVDDDGP 146
                 89**767788888778888************.********************99**************99**************************99* PP

                 EEEEEEEEEE CS
        AIRS  85 tisvtavGlv 94 
                  + ++++G+v
  KIR65668.1 147 KYGLAVTGVV 156
                 ********97 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.51
                 C CS
        AIRS  53 p 53 
                  
  KIR65668.1 208 D 208
                 2 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.3   2.3e-17   2.1e-13       2     118 ..     169     306 ..     168     328 .. 0.75

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 2.3e-17
                 TTEEEEEEETSSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHHHTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHHHHHH CS
      AIRS_C   2 pGdvliltgslGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaalkglvkaahDvTgGGLlgalaemapasgvgaeidldkvpifdel 100
                 +G  l lt++lG+g+++t +k+++ ++++        + + +     +++ra+ a+  ++++ +DvTg+GLlg+++ +a+as++++ id+++vp +  +
  KIR65668.1 169 AGLPLSLTKPLGVGVLNTRHKATGERFAE--------AVASMAALNRDAARAAVAA--GIRCGTDVTGFGLLGHASKLARASRLTVAIDAARVPYLPGA 257
                 788899***********888886666654........5566666678888888886..*********************************88777766 PP

                 H.HHHHHHHC..............................STTTEEEEE CS
      AIRS_C 101 e.splemlls..............................ensGrllva 118
                 +    + ++s                              ++sG+llva
  KIR65668.1 258 ReALRDGYVSggtrrnldwvtpwtdfggadegerllladaQTSGGLLVA 306
                 5434555555888889999999999999666666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2370.56
//
Query:       KIR65669.1  [L=159]
Description: hypothetical protein TK50_09935 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1096.08
//
Query:       KIR65670.1  [L=78]
Description: hypothetical protein TK50_09940 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-27   93.3   0.6      9e-27   93.2   0.6    1.0  1  DUF2277   Uncharacterized conserved protein (DUF2277)


Domain annotation for each model (and alignments):
>> DUF2277  Uncharacterized conserved protein (DUF2277)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.6     5e-31     9e-27       1      74 [.       1      75 [.       1      78 [] 0.92

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 5e-31
     DUF2277  1 MCrnIktLrn.lePpateeeiraAAlqyVRKvsGvrkpsaaneeaferAveeiaaaterLLdeLetrappkrree 74
                MCr+IktLr+ + P +++++i+aAAlqyVRK+sG+r+p+a+n++af++Av+++a+at++LLd+L+ r  + +r++
  KIR65670.1  1 MCRSIKTLREpYVPEVSRADIEAAALQYVRKISGFRAPAAHNAAAFDAAVAAVAEATATLLDQLVVRGGAPQRPA 75
                *********646788***************************************************996666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 630.98
//
Query:       KIR65671.1  [L=321]
Description: pectate lyase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-39  136.3  11.5    7.8e-39  133.4  11.5    2.0  1  Pec_lyase_C     Pectate lyase
    4.1e-12   46.2  19.4    4.3e-10   39.7  12.9    2.1  2  Beta_helix      Right handed beta helix region
  ------ inclusion threshold ------
      0.029   14.4   1.0      0.046   13.7   0.1    1.8  2  Glyco_hydro_49  Glycosyl hydrolase family 49


Domain annotation for each model (and alignments):
>> Pec_lyase_C  Pectate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.4  11.5   1.3e-42   7.8e-39      30     211 .]      90     253 ..      65     253 .. 0.86

  Alignments for each domain:
  == domain 1  score: 133.4 bits;  conditional E-value: 1.3e-42
  Pec_lyase_C  30 kisvesnetiiGiiGtngkltnigilvidnssnvivrnlviktdgsakdgDairidnsa.nvWvDHveisdksfeddkttdkdvqfdkaldikkasdy 126
                     v sn+ti G  G+  +    g  +  +  nvi+rnl +   +++   Dai++++sa nvWvDH++++++             +d+a+dik++sd+
   KIR65671.1  90 MLRVRSNKTILGNPGATISGC--GFNIS-GDRNVIIRNLTFT--SWN--DDAINVQESAtNVWVDHNTFTGG-------------YDGAVDIKRGSDF 167
                  45799*******766655444..55565.99********996..455..689****9999*******98764.............89*********** PP

  Pec_lyase_C 127 vtisnslfeqhkktiliGhsddnssqdkGklrvtlhhnvyedvteRaPlvRyGs.iHaynnvyvnkyllsfgvaqsgsvLsEsnsF 211
                  +t+s +++ +h+k++l Ghsddn+sqd+G+lrvt+hhn ++  t+R P+vR+G+ +H+ynn y  +  ++++ + s+ vL+E+n+F
   KIR65671.1 168 ITVSWNRVYNHDKSMLLGHSDDNASQDTGHLRVTYHHNWFDASTQRHPRVRFGNpVHVYNNYYYRNSGYGVASTMSAGVLVEGNYF 253
                  *****************************************************77******888888888888899********99 PP

>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7  12.9   7.2e-14   4.3e-10      10     158 .]      97     253 ..      88     253 .. 0.88
   2 !   18.1   0.4   3.1e-07    0.0019      58     138 ..     201     283 ..     196     299 .. 0.80

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 7.2e-14
                 E.EEESEEEES-SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT.-S-EEES-EEE---SEEE-TT.--S--EEES-EEES-SS-SEE-T.T....-S CS
  Beta_helix  10 nvtiknntisnsggyGiylrgssnvvienneiannsgsGiyilgs.snntisnntisdnngggialf.gasnnlienneitdnggsGiyln.y....ss 101
                   ti +n    ++g+G+ + g++nv+i+n ++++++++ i +++s +n+++++nt++++++g++ ++ g++  +++ n++++ ++s + l  +    s 
  KIR65671.1  97 K-TILGNPGATISGCGFNISGDRNVIIRNLTFTSWNDDAINVQESaTNVWVDHNTFTGGYDGAVDIKrGSDFITVSWNRVYNHDKS-MLLGhSddnaS- 192
                 3.6777777778*******************************************************8888999999******885.54542334443. PP

                 -......-EEES-EEESTT--SEE---TT---EEES-EEES-SSEEEE-TT-SS--EEES-E. CS
  Beta_helix 102 n......ntienNiidnnagsGividdsssnvtvtnNtitnnkgaGiavvgsssnvtvrnNti 158
                 +      +t ++N++d+ ++    ++ ++  v v nN  + n+g+G+a + s++ v v++N +
  KIR65671.1 193 QdtghlrVTYHHNWFDASTQRHPRVRFGN-PVHVYNNYYYRNSGYGVASTMSAG-VLVEGNYF 253
                 2588889999*******************.*****************9999999.***99976 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 3.1e-07
                 EEES-EEE---SEEE-TT--S--EEES-EEES-SS-SEE-TT-S--EEES-EEESTT--SEE---TT...---EEES-EEES-S CS
  Beta_helix  58 tisnntisdnngggialfgasnnlienneitdnggsGiylnyssnntienNiidnnagsGividdss...snvtvtnNtitnnk 138
                 t ++n +  +++ +  ++ ++++ ++nn  ++n+g+G+  + s  + +e+N++++++ + +++ ++s    +++ +nN++++++
  KIR65671.1 201 TYHHNWFDASTQRHPRVRFGNPVHVYNNYYYRNSGYGVASTMSAGVLVEGNYFESVS-DPFHLGEGSsgpGTLVARNNHFVSSG 283
                 556666666668888889999999999999999999998888999999999999999.88888888888888889999998876 PP

>> Glyco_hydro_49  Glycosyl hydrolase family 49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1         1   6.1e+03      10      33 ..      59      82 ..      54      90 .. 0.64
   2 ?   13.7   0.1   7.7e-06     0.046      35      70 ..     114     149 ..      95     163 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1
                    EEEEEEEEEEEEEECCE-ECEEE- CS
  Glyco_hydro_49 10 ktvknltlenvaveGltnalvRiy 33
                    +tv +     +av  ++ a++R+ 
      KIR65671.1 59 TTVTSASALTTAVGSSSAAVIRVS 82
                    555555555556666666667764 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 7.7e-06
                     SEEEEEEEEEEEEECEET-CGCSTT-EEE---CCTT CS
  Glyco_hydro_49  35 lqnlenisiknvnieafegLeigtqeshlkrysdla 70 
                     ++   n+ i+n+++ +++   i+ qes  +++ d +
      KIR65671.1 114 ISGDRNVIIRNLTFTSWNDDAINVQESATNVWVDHN 149
                     66778***************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2314.26
//
Query:       KIR65672.1  [L=549]
Description: endoglucanase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-59  199.3   2.7    1.1e-58  198.9   2.7    1.1  1  Cellulase       Cellulase (glycosyl hydrolase family 5)
    1.5e-23   83.0  14.9    1.5e-23   83.0  14.9    2.3  2  CBM_2           Cellulose binding domain
    0.00088   18.7   0.1       0.56    9.5   0.0    2.7  3  Glyco_hydro_42  Beta-galactosidase
     0.0011   19.2   4.3     0.0034   17.7   4.3    1.9  1  DUF11           Domain of unknown function DUF11


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.9   2.7   2.5e-62   1.1e-58       2     281 .]      53     381 ..      52     381 .. 0.90

  Alignments for each domain:
  == domain 1  score: 198.9 bits;  conditional E-value: 2.5e-62
                 TTTSEEE.....EGEEECET.......TSCGGSHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTT.........GCTHHHHHHHHHHHHHHHHTT-EEE CS
   Cellulase   2 dasgkpv.....nlkglsts.......wgnpyttkalidevkdagfntvRlpvswgelvenapdy.........kvdenslerveevvkyakenglyvi 79 
                 d++g+ v     n++g++t        w+n+ ++   +d+++  g+nt+R+p+s + l + a            +v+ + l+++++v++ya ++g++vi
  KIR65672.1  53 DSTGATVrltgiNWFGMETDnktfhglWSNN-PWRGQLDTMARLGYNTLRIPYSNDALKPGATASgindfvnpdLVGLSPLQILDKVIAYAGSKGMRVI 150
                 6666666666779******9*********98.9*********************544443222224555666666899********************* PP

                 EEEESS......TTTCSSSSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCT.....CCT.CHHHTTHHHHHHHHHHHHHHHHTTSS CS
   Cellulase  80 ldiHse......egwltkadgnssedtaeeffkklwtqiAerykkndevvifelmNEPhgnntg.....aew.tseeadevkayaeeaikaIRavgpnr 166
                 ld H++      ++w      ++s+ ++  ++++ w+ +A+ry++n++v++ +l+NEPh ++t+     a w + ++a +++ +ae+a +aI+ v pn+
  KIR65672.1 151 LDRHRPtaagqsPLW------YTSTVSEATWIND-WKMLAQRYANNPTVIGADLHNEPHAEGTNpaatgACWgCGDTARDWRLAAERAGNAILGVQPNW 242
                 ******888888888......9999*********.*************************99999*999999*************************** PP

                 EEEEECHH......................HHTBHHHHHCTSG..SSSSTTEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTS.EEE CS
   Cellulase 167 liivegns......................wsgnldgavlndP..ndsqdnliysvHfYgpsdfaqtefgkdltdktnlaqrledaakylvekgi.pvi 240
                 li+veg+s                      w+gnl++ + ++P   +++++l+ys+H Y+ s+++q++f k    + nl+  ++++++yl +++i p++
  KIR65672.1 243 LIFVEGVScpsgglsnvwdndpsndedcgwWGGNLSK-AGQFPvrLNVANRLVYSPHEYATSVYEQNWF-KAPDYPANLPAIWDKYWGYLYKQNIaPIM 339
                 *************************************.889**884479********************.9999************************* PP

                 EEEEESSTTSSHHHHHHHHHH......HHHHHHTTTEEEEEEESSSS CS
   Cellulase 241 igEfGgsnadgdlakeeaekw......ldylkekgiswiyWslnpks 281
                 +gEfG + ad      +++ w      ++ +  +g+s++yWs+np+s
  KIR65672.1 340 MGEFGSTLADP-----RDKVWlenlmaYTGTGVNGMSFTYWSWNPNS 381
                 *****988888.....777786666445555899***********96 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.3     6e+03      68      68 ..      68      68 ..      45     116 .. 0.55
   2 !   83.0  14.9   3.4e-27   1.5e-23       1     101 []     451     549 .]     451     549 .] 0.98

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
                - CS
       CBM_2 68 g 68
                g
  KIR65672.1 68 G 68
                2 PP

  == domain 2  score: 83.0 bits;  conditional E-value: 3.4e-27
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTE CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGa 99 
                 ++aty+  ++W +Gf++++tvkN gssa+n W+v+w++pag ++++ Wnatv+qsG++vta +  w +++a+G+s+++Gf++++++s   p ++++nG 
  KIR65672.1 451 CTATYKQVNSWAGGFQGELTVKNGGSSAVNPWSVTWNWPAGVTLVSGWNATVTQSGTAVTAAAPAWSASLAAGASVTVGFTANGSASV--PGTVKLNGV 547
                 89********************************************************************************999976..999****** PP

                 E- CS
       CBM_2 100 aC 101
                 aC
  KIR65672.1 548 AC 549
                 99 PP

>> Glyco_hydro_42  Beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00013      0.56       7      84 ..      80     174 ..      76     179 .. 0.81
   2 !    7.0   0.0   0.00073       3.3     114     141 ..     177     204 ..     166     225 .. 0.80
   3 ?   -3.4   0.0         1   4.7e+03      10      35 ..     353     378 ..     350     380 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00013
                     S-CCHHHHHHHHHHHHT--EEEE-TT-HHHH-S...BTTB---HH...........HHHHHHHHHCTT-EEEEE....-STTS--HHHHHH-GGG CS
  Glyco_hydro_42   7 wpeeaweedirlmkeagvnvvrlgefaWakleP...eegkydFew...........LdevldllekagikviLa....tptaapPaWlvkkyPei 83 
                     w+++ w+ +++ m ++g n++r+ + +   l P    +g  dF             Ld+v++ ++++g++viL     t+ +  P W + +  e+
      KIR65672.1  80 WSNNPWRGQLDTMARLGYNTLRIPY-SNDALKPgatASGINDFVNpdlvglsplqiLDKVIAYAGSKGMRVILDrhrpTAAGQSPLWYTSTVSEA 173
                     9999999999999999999999865.667888844346778888899999999999*****************63433556669***99988887 PP

                     S CS
  Glyco_hydro_42  84 l 84 
                      
      KIR65672.1 174 T 174
                     6 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00073
                     HHHHHHHHHHTT-TTEEEEE-SSSTTTT CS
  Glyco_hydro_42 114 kivealaerYkdhpavilwhidnEygch 141
                     +  + la+rY+++p vi+  ++nE + +
      KIR65672.1 177 NDWKMLAQRYANNPTVIGADLHNEPHAE 204
                     556789******************7764 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1
                     CHHHHHHHHHHHHT--EEEE-TT-HH CS
  Glyco_hydro_42  10 eaweedirlmkeagvnvvrlgefaWa 35 
                     ++w e++   +  gvn +++++ +W+
      KIR65672.1 353 KVWLENLMAYTGTGVNGMSFTYWSWN 378
                     78889999999999********9997 PP

>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   4.3   7.6e-07    0.0034      20      84 ..     469     540 ..     468     548 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 7.6e-07
       DUF11  20 ltvtNtgpasangvvvtDtlPaglayvsvsas....qgtasaltsv.....gsLeagesatlsftvrvtrtaas 84 
                 ltv+N g ++ n   vt  +Pag+++vs+  +    +gta ++  +      sL+ag+s t+ ft++ +++   
  KIR65672.1 469 LTVKNGGSSAVNPWSVTWNWPAGVTLVSGWNAtvtqSGTA-VTA-AapawsASLAAGASVTVGFTANGSASVPG 540
                 8***************************987766542222.222.2467779**************99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3882.68
//
Query:       KIR65673.1  [L=402]
Description: DNA repair ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-55  183.6  53.0    1.4e-23   83.0   7.5    4.5  4  DUF349    Domain of Unknown Function (DUF349)
     0.0028   17.8   6.4     0.0028   17.8   6.4    4.3  4  DUF1090   Protein of unknown function (DUF1090)
  ------ inclusion threshold ------
       0.29   11.3  16.2       0.59   10.3   1.0    4.4  5  DUF4363   Domain of unknown function (DUF4363)


Domain annotation for each model (and alignments):
>> DUF349  Domain of Unknown Function (DUF349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   6.5   1.1e-18   6.8e-15       1      75 []      92     166 ..      92     166 .. 0.97
   2 !   67.5   9.2   1.6e-22   9.3e-19       1      74 [.     170     242 ..     170     243 .. 0.96
   3 !   83.0   7.5   2.4e-27   1.4e-23       1      75 []     247     320 ..     247     320 .. 0.96
   4 ?   -3.1   5.3       1.7     1e+04      12      44 ..     364     400 ..     348     401 .. 0.63

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 1.1e-18
      DUF349   1 aLwkrFraacdafferrkahfeeqdaereenlekKealieeaealaksttdwksatkrlkelqeeWkeiGpVprk 75 
                 aL +r++++   ++e+  +++++++a+r e+l++K+al+eeae+la+++t wk+a +rlke+ +eWk+i  V++k
  KIR65673.1  92 ALAARLDKLAAVAEEKAGEARAAREAARGEALARKTALVEEAEKLAAESTGWKTAGDRLKEILDEWKTIRGVDKK 166
                 58899******************************************999**********************986 PP

  == domain 2  score: 67.5 bits;  conditional E-value: 1.6e-22
      DUF349   1 aLwkrFraacdafferrkahfeeqdaereenlekKealieeaealaksttdwksatkrlkelqeeWkeiGpVpr 74 
                 +LwkrF aa+d f +rr ahf+++d +r+++ + Ke+l++eae+l +s tdw +++++lkel+++Wk++ ++ +
  KIR65673.1 170 ELWKRFAAARDGFTRRRGAHFASLDSQRKQAQQVKEDLVAEAEKLRDS-TDWAATANQLKELMNQWKAAPRAAK 242
                 79*******************************************999.5*******************99876 PP

  == domain 3  score: 83.0 bits;  conditional E-value: 2.4e-27
      DUF349   1 aLwkrFraacdafferrkahfeeqdaereenlekKealieeaealaksttdwksatkrlkelqeeWkeiGpVprk 75 
                 +Lw+rFraa+daff rr + f+++d+e+ +nle+K+al++eaeal+ + +d k a ++l+e+q++W+e+G+Vpr+
  KIR65673.1 247 KLWERFRAAQDAFFTRRSEVFSARDNEQRANLERKQALLAEAEALDVD-ADPKGAQAKLREIQAQWHEAGRVPRE 320
                 59*******************************************777.499*********************96 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 1.7
      DUF349  12 afferrkahfeeqdaer....eenlekKealieeaea 44 
                 +++er++ ++++ d+ r    e++l+ K++ ++ ae+
  KIR65673.1 364 EAEERLARAQAAGDNRRikeaEQALASKRQFLQLAEQ 400
                 4444444444444444444448899999888887776 PP

>> DUF1090  Protein of unknown function (DUF1090)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0074        44      74     107 ..      73     106 ..      57     109 .. 0.88
   2 ?   -2.1   2.9      0.69   4.1e+03      69     109 ..     194     235 ..     187     250 .. 0.72
   3 !    4.5   1.6     0.006        36      69     109 ..     272     312 ..     255     313 .. 0.90
   4 !   17.8   6.4   4.6e-07    0.0028      10     108 ..     292     395 ..     284     397 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0074
     DUF1090  74 eVaereaeLaeakekgdkdkiakrqekLaeakee 107
                  +++ +a Laea   gd d  a+r +kLa   ee
  KIR65673.1  73 TIRRIRASLAEAHVVGDIDALAARLDKLAAVAEE 106
                 6889999*********************987665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.69
     DUF1090  69 eekeeeVaereaeL.aeakekgdkdkiakrqekLaeakeeLk 109
                 ++++++ ++ +++L aea++  d+ + a+  ++L+e  +++k
  KIR65673.1 194 DSQRKQAQQVKEDLvAEAEKLRDSTDWAATANQLKELMNQWK 235
                 556666777777772445555588888888888888666655 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.006
     DUF1090  69 eekeeeVaereaeLaeakekgdkdkiakrqekLaeakeeLk 109
                 +e+++++++++a Laea++ + +++ +  q+kL e +++++
  KIR65673.1 272 NEQRANLERKQALLAEAEALDVDADPKGAQAKLREIQAQWH 312
                 689999***************9999999******9998876 PP

  == domain 4  score: 17.8 bits;  conditional E-value: 4.6e-07
     DUF1090  10 aaaaalsgCaaKkqaIekqieaAkahgnqkrvagLekaLkevkanCtd......eklkaerqekveekeeeVaereaeLaeakekgdkdkiakrqekLa 102
                   +a+ +g +aK  +I+ q ++A     +  +agLe+ L+ v+++ ++       +  +e +  +++ +++Vae e+ La a++ gd+  i++ ++ La
  KIR65673.1 292 DVDADPKGAQAKLREIQAQWHEAGRVPRE-AAAGLERRLRVVDDKVREvmdsawRRTTKEDNPLLAQMRSQVAEAEERLARAQAAGDNRRIKEAEQALA 389
                 5567788999*************988765.589*******999887652222212344455556799******************************** PP

     DUF1090 103 eakeeL 108
                  +++ L
  KIR65673.1 390 SKRQFL 395
                 999866 PP

>> DUF4363  Domain of unknown function (DUF4363)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.93   5.6e+03      11      27 ..      90     106 ..      80     118 .. 0.55
   2 ?    5.9   0.2    0.0022        13      17      46 ..     129     159 ..     125     163 .. 0.82
   3 ?   10.3   1.0   9.9e-05      0.59       9      45 ..     198     235 ..     190     239 .. 0.82
   4 ?    3.1   0.1     0.017     1e+02      19      47 ..     286     314 ..     277     317 .. 0.78
   5 ?   -0.2   0.1      0.18   1.1e+03      16      46 ..     360     390 ..     355     398 .. 0.43

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.93
     DUF4363  11 tdelsekleeleeaien 27 
                 +d l ++l++l + +e+
  KIR65673.1  90 IDALAARLDKLAAVAEE 106
                 44445555555433332 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0022
     DUF4363  17 kleeleeai.enedweeakekleelekeWek 46 
                  +ee+e+ + e+  w++a + l+e+ +eW+ 
  KIR65673.1 129 LVEEAEKLAaESTGWKTAGDRLKEILDEWKT 159
                 567777766699*****************97 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 9.9e-05
     DUF4363   9 kstdelsekl.eeleeaienedweeakekleelekeWe 45 
                 k++++ +e+l  e+e+  ++ dw++++++l+el ++W+
  KIR65673.1 198 KQAQQVKEDLvAEAEKLRDSTDWAATANQLKELMNQWK 235
                 566666666658888888*******************8 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.017
     DUF4363  19 eeleeaienedweeakekleelekeWekk 47 
                  e+e+   + d + a+ kl+e++ +W++ 
  KIR65673.1 286 AEAEALDVDADPKGAQAKLREIQAQWHEA 314
                 44554446778999************986 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.18
     DUF4363  16 ekleeleeaienedweeakekleelekeWek 46 
                 +++ e+ee +   + +  ++ ++e+e+   +
  KIR65673.1 360 SQVAEAEERLARAQAAGDNRRIKEAEQALAS 390
                 3444444444444433444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1572  (0.0876792); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 2904.58
//
Query:       KIR65674.1  [L=257]
Description: hypothetical protein TK50_09965 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00032   19.8   0.0      0.039   13.0   0.0    2.1  2  LigB      Catalytic LigB subunit of aromatic ring-opening dio


Domain annotation for each model (and alignments):
>> LigB  Catalytic LigB subunit of aromatic ring-opening dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0   0.00058        10       2      49 ..       6      52 ..       5      70 .. 0.87
   2 !   13.0   0.0   2.2e-06     0.039     172     272 ..     160     251 ..     128     252 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.00058
        LigB  2 alllsHvppilaavdgkeqealrekvikgyesireriaeksPdtiivv 49
                a++ +H+p+i+ +  g++ ++l+e +    +++ +r+ + +Pd++++ 
  KIR65674.1  6 AAVCPHPPLIVPELAGTAAAELDE-LRRATDAAVARLLACAPDALVLL 52
                56789*****99999******999.777789999999999*****997 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.2e-06
        LigB 172 vlilgsGglsHqlegdeaakadaqtlllneefdeelldllkegrveelckmskeelsaaagheeeelvplvvalGalsgdkaelrkelvsyeglpavsa 270
                  l+lg G++ H  +++  a  d+    l+ ++d  +  +l +++ e l+++++    +    +  +  p+ v++Ga+  + + +r +l ++++  +v++
  KIR65674.1 160 LLVLGDGSACHGTKAPGYA--DP----LAGAYDDGVARALADADAEALLGLDPAVSARL---KVAGRAPWQVLAGAARAAGGDWRGDLTYHDAPYGVAY 249
                 5899********9999977..55....*************************6655555...6999************99************9999998 PP

        LigB 271 vf 272
                 ++
  KIR65674.1 250 FV 251
                 87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1861.86
//
Query:       KIR65675.1  [L=312]
Description: tRNA delta(2)-isopentenylpyrophosphate transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-75  252.2   0.0      6e-75  252.0   0.0    1.0  1  IPPT            IPP transferase
    1.7e-06   27.6   0.0    2.6e-06   27.0   0.0    1.3  1  IPT             Isopentenyl transferase
    0.00064   19.9   0.1     0.0015   18.7   0.0    1.8  2  AAA_33          AAA domain
     0.0053   16.5   0.0     0.0092   15.7   0.0    1.4  1  Cytidylate_kin  Cytidylate kinase
  ------ inclusion threshold ------
      0.037   13.6   0.5       0.11   12.0   0.5    1.8  1  AAA_25          AAA domain
      0.068   12.9   0.1       0.16   11.7   0.1    1.6  1  IstB_IS21       IstB-like ATP binding protein
        0.1   11.7   0.2       0.15   11.2   0.2    1.1  1  TIP49           TIP49 P-loop domain
       0.13   12.4   0.7        2.8    8.2   0.2    2.8  3  PGM_PMM_IV      Phosphoglucomutase/phosphomannomutase, C-term
       0.15   12.4   4.1        0.5   10.7   4.1    2.3  1  AAA_16          AAA ATPase domain
        0.2   12.1   0.1       0.37   11.3   0.1    1.4  1  ABC_tran        ABC transporter
       0.21   12.1   0.0       0.32   11.5   0.0    1.2  1  AAA_23          AAA domain


Domain annotation for each model (and alignments):
>> IPPT  IPP transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.0   0.0   3.7e-78     6e-75       1     227 [.      47     289 ..      47     290 .. 0.96

  Alignments for each domain:
  == domain 1  score: 252.0 bits;  conditional E-value: 3.7e-78
                 TTBTT-HTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTG-S--B--HHHHHHHHHHHHHSHHH CS
        IPPT   1 qvYrgmdIgTakptaeeragvphhlidildpdeeysvadFqkdalkaieeilargkipilvGGTglYikallegldelpeadeelraeleeeaeeegle 99 
                 q+YrgmdIgTak t++er+gvphhl+di  ++e+ sva++q+ a++a+++ilarg++p+lvGG+glY++a+le + e+p +d++lra+le+e++ +g +
  KIR65675.1  47 QLYRGMDIGTAKLTPAERDGVPHHLLDIWPVTEPASVAEYQRLARAAVDDILARGRVPLLVGGSGLYVRAVLERF-EFPGTDPALRARLEAELAAAGPA 144
                 89*************************************************************************.8***************8888988 PP

                 HHHHHHHHC-HHHHTTS-TT-HHHHHHHHHHHHHHSS-HH..........ECEEEEEECSHHHHHHHHHHHHHHHHHTTHHHHHHHHHH.......CCC CS
        IPPT 100 alheelkevdpeaaakihpndrqRiiRalevyeetgkpls..........ellviglesdreelyeridkRvdemleaGlleEveklla.......kal 181
                  lh++l++ dp+aa+ i p + +Ri+Ralev+e+tg p++          + +++g++ d++ l+eri+ Rvd+m+++Gl+ Ev+ ll+       +a 
  KIR65675.1 145 PLHARLRAADPAAAEGILPGNGRRIVRALEVIELTGAPFTaalpgptpyyPSVQLGVDLDTAALDERIALRVDRMWADGLVTEVRGLLDrglpegrTAS 243
                 8***************************************88888888774599***77*****************************9888888558* PP

                 CSTTSHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHTTCCE CS
        IPPT 182 qaigykelleylegelsleeaieklkaatrqyaKrQltWfrkkkei 227
                 +a+gy+++l++l+gel+ +ea +++++atr++++rQ++Wfr++++i
  KIR65675.1 244 RALGYQQVLRFLAGELTEAEAHDETIRATRRFVRRQRSWFRRDPRI 289
                 ******************************************9987 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.6e-09   2.6e-06       3      68 ..      14      79 ..      12     118 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.6e-09
         IPT  3 vylifGatttGKtaeaiklaketgapvivlDRvqcyselavgsGrpleeelegtrRiylddrslse 68
                v +++G+t+ GK+a +i+la++ g  v+ +D +q y  + +g+ + +++e +g+    ld  +++e
  KIR65675.1 14 VVAVVGPTAAGKSALSIALAHALGGEVVNADSMQLYRGMDIGTAKLTPAERDGVPHHLLDIWPVTE 79
                7799***************************************99999998887776666666555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   9.2e-07    0.0015       1      33 [.      14      46 ..      14     106 .. 0.78
   2 ?   -3.5   0.1       6.4     1e+04     123     140 ..     266     283 ..     254     285 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 9.2e-07
      AAA_33  1 lvllvGlpGsGKstlaerllkklgavllssdtl 33
                +v +vG+ ++GKs l+  l+ +lg+++++ d++
  KIR65675.1 14 VVAVVGPTAAGKSALSIALAHALGGEVVNADSM 46
                799****************************93 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 6.4
      AAA_33 123 ddrsevpeealdrqkarf 140
                 d+ ++++++ + rq+++f
  KIR65675.1 266 DETIRATRRFVRRQRSWF 283
                 334445555555555554 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.6e-06    0.0092       1      36 [.      15      52 ..      15      69 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.6e-06
                    EEEE-STTSSHHHHHHHHHHHHT-EEEEHHHH..HHHH CS
  Cytidylate_kin  1 iaiDGPagsGKssvaralaeklglkyldtgal..YRal 36
                    +a+ GP+++GKs+++ ala+ lg +++++ ++  YR +
      KIR65675.1 15 VAVVGPTAAGKSALSIALAHALGGEVVNADSMqlYRGM 52
                    6899*******************999976654228865 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5     7e-05      0.11      28      56 ..       7      35 ..       5      43 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7e-05
      AAA_25 28 gllpagelallaGapgtGKttlaldlala 56
                g   +g++++++G++++GK++l + la+a
  KIR65675.1  7 GRAGRGTVVAVVGPTAAGKSALSIALAHA 35
                67789*******************99987 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   9.7e-05      0.16      48      96 ..      13      65 ..       9      74 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.7e-05
   IstB_IS21 48 enivllGpsGvGKshlaialgve....avraglsvlfvrvedLveelkrarrd 96
                  ++++Gp+ +GKs l+ial+++     v+a+   l+  ++   ++l  a+rd
  KIR65675.1 13 TVVAVVGPTAAGKSALSIALAHAlggeVVNADSMQLYRGMDIGTAKLTPAERD 65
                5689**********998877765111155555555555555555555555555 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   9.1e-05      0.15      50      78 ..      12      40 ..       6      62 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.1e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 50 GravLlaGpsgtGktalaiaiskelgedv 78
                G +v ++Gp+++Gk+al+ia++++lg +v
  KIR65675.1 12 GTVVAVVGPTAAGKSALSIALAHALGGEV 40
                5678899******************9765 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         5   8.2e+03      16      24 ..      94      97 ..      77     121 .. 0.49
   2 ?    2.4   0.0      0.11   1.8e+02      45      57 ..     125     137 ..     123     144 .. 0.88
   3 ?    8.2   0.2    0.0017       2.8      13      43 ..     143     172 ..     130     172 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5
                CCCCCTTHH CS
  PGM_PMM_IV 16 laallkvas 24
                +++      
  KIR65675.1 94 VDD-----I 97
                222.....2 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.11
                 TTCCEEEEEEEES CS
  PGM_PMM_IV  45 GTepllrvyvEak 57 
                 GT p lr ++Ea 
  KIR65675.1 125 GTDPALRARLEAE 137
                 9**********96 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0017
                 .EECCCCCTTHHCCCCCCCCGCCEEEE.EEE CS
  PGM_PMM_IV  13 vaalaallkvasikeglkilledGrrlavRp 43 
                 +a l a+l +a+++ ++ il ++Grr+ vR+
  KIR65675.1 143 PAPLHARLRAADPAAAEGILPGNGRRI-VRA 172
                 566667777779***************.**7 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.1   0.00031       0.5      19      63 ..       7      48 ..       2     310 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00031
      AAA_16 19 vrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                 r+gr+ +v ++G+ + GKs+l  +l++al ++   +++++  ql
  KIR65675.1  7 GRAGRGTVVAVVGPTAAGKSALSIALAHALGGE---VVNADSMQL 48
                689999********************9999988...566655555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00023      0.37      10      34 ..      11      35 ..       6      62 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00023
                TTSEEEEEESTTSSHHHHHHHHTTS CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 10 egekvaivGenGaGKStLlkllagl 34
                +g++va+vG++ aGKS L  +la+ 
  KIR65675.1 11 RGTVVAVVGPTAAGKSALSIALAHA 35
                799**************98888765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00019      0.32      21      50 ..      14      43 ..      11      67 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
      AAA_23 21 ltlItGpNGaGKTTildAiklaLygetprl 50
                +++++Gp+ aGK+++  A+  aL+ge+ + 
  KIR65675.1 14 VVAVVGPTAAGKSALSIALAHALGGEVVNA 43
                57899********************98444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2330.04
//
Query:       KIR65676.1  [L=281]
Description: diaminopimelate epimerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-53  178.3   0.1    4.6e-32  110.7   0.0    2.1  2  DAP_epimerase  Diaminopimelate epimerase
     0.0017   17.4   0.1      0.067   12.2   0.0    2.1  2  Pro_racemase   Proline racemase
  ------ inclusion threshold ------
      0.034   14.1   0.1      0.065   13.2   0.1    1.4  1  Flavi_propep   Flavivirus polyprotein propeptide


Domain annotation for each model (and alignments):
>> DAP_epimerase  Diaminopimelate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.0   7.8e-36   4.6e-32       1     117 [.       3     129 ..       3     133 .. 0.95
   2 !   65.8   0.0   6.3e-22   3.8e-18       2     108 ..     149     259 ..     148     273 .. 0.89

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 7.8e-36
                    EEEECSSEEEEEEECCTTCSSHHHHHHHHHHHTTTTSTT-SEEEEEE..........EEETTEEEEEEEETTTEEESTTHCCHHHHHHHHHCTTS- CS
  DAP_epimerase   1 fakshGnpndvvvvddveaelvleaelvaalcdreagpgadgvlfvk..........psgeediklryfnrdgseaemCGnGvrvfaaylreggle 86 
                    f+k+hG++nd+v+++d +++l+l++ lvaalcdr++g+gadgvl+v+           +ge++  ++y+n+dgs+aemCGnG+rvf++yl e+gl+
     KIR65676.1   3 FTKGHGTGNDFVILPDPDGALDLTPGLVAALCDRRRGLGADGVLRVVraakhpegtgRAGEAEWFMDYWNADGSFAEMCGNGARVFVRYLLEQGLA 98 
                    89*******************************************************99************************************9 PP

                    ..S-SEEEEEETTEEEEEEEECTTSSEEEEEE- CS
  DAP_epimerase  87 ..tkkevtvetlgGeleievkddgekvkvdmGk 117
                       + +v v t++G + + v+ d+    v+m +
     KIR65676.1  99 apVDGTVPVVTRAGLVRARVEGDDI--AVEMRR 129
                    78899************99999984..676655 PP

  == domain 2  score: 65.8 bits;  conditional E-value: 6.3e-22
                    EEECSSEEEEEEECCTTCSSHHHHHHHHHHHTTTTSTT-SEEEEEE.....EEETTEEEEEEEETTTEEESTTHCC.HHHHHHHHHCTTS-S-SEE CS
  DAP_epimerase   2 akshGnpndvvvvddveaelvleaelvaalcdreagpgadgvlfvk.....psgeediklryfnrdgseaemCGnG.vrvfaaylreggletkkev 91 
                    a+++Gnp++v+ ++   +   l   + a   d   +p +++v+f +     + ++ ++ +r+++r++ e+ +CG+G ++v+a++lr++g  ++ ++
     KIR65676.1 149 AVDVGNPHLVCALPAGLELGALD-LTRAPAFDPALFPAGVNVEFTVpgdpvDGTDGHVLMRVHERGSAETLSCGTGaCAVAAVALRDAG-RDTGTM 242
                    899**********9887766665.56666778899***********9**9877899********************************9.66**** PP

                    EEEETTEEEEEEEECTT CS
  DAP_epimerase  92 tvetlgGeleievkddg 108
                    tv+++gG l+++v+dd 
     KIR65676.1 243 TVDVPGGRLTVTVTDDS 259
                    **************996 PP

>> Pro_racemase  Proline racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.1e-05     0.067      79     130 ..      77     126 ..      60     133 .. 0.88
   2 !    3.0   0.2    0.0073        44      81     125 ..     218     258 ..     186     263 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.1e-05
                   B-SSTHHHHHHHHHHHHHTTSS-SEEEECEEEEEETTEEEEEEEECTSTSEE CS
  Pro_racemase  79 ylpmcGsntigvvtvlletGlvevqepetklsletpaGlvevtaecrdgkve 130
                      mcG+++   v+ lle+Gl ++   +  + + t aGlv++++e +d  ve
    KIR65676.1  77 FAEMCGNGARVFVRYLLEQGLAAPVDGT--VPVVTRAGLVRARVEGDDIAVE 126
                   468******************9887766..999************9997665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0073
                   SSTHHHHHHHHHHHHHTTSS-SEEEECEEEEEETTEEEEEEEECT CS
  Pro_racemase  81 pmcGsntigvvtvlletGlvevqepetklsletpaGlvevtaecr 125
                    +cG ++ +v++v+l      +   + ++++++p+G ++vt++++
    KIR65676.1 218 LSCGTGACAVAAVALRD----AGRDTGTMTVDVPGGRLTVTVTDD 258
                   47999999999998864....344555788999999999998876 PP

>> Flavi_propep  Flavivirus polyprotein propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.1e-05     0.065       6      75 ..     204     274 ..     200     278 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
  Flavi_propep   6 lllvskeelGksllfktsvGvnnctliilelkelceds..meykcp..rlseeepddvdcwcyavevrvayGkc 75 
                   ++l+  +e+G +     s G++ c++ ++ l++   d+  m+ + p  rl+ +  dd  cw  +    +a G+ 
    KIR65676.1 204 HVLMRVHERGSAE--TLSCGTGACAVAAVALRDAGRDTgtMTVDVPggRLTVTVTDD-SCWLAGPALLIATGTV 274
                   5555566666655..45*****************99954499999877899999999.7**9999988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1978.60
//
Query:       KIR65677.1  [L=491]
Description: malate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-30  105.8   0.0      4e-28   98.5   0.0    2.6  1  malic          Malic enzyme, N-terminal domain
    8.9e-23   80.9   2.5    8.9e-23   80.9   2.5    2.9  3  Malic_M        Malic enzyme, NAD binding domain
    0.00031   20.2   0.5    0.00065   19.1   0.5    1.5  1  ThiF           ThiF family
     0.0048   16.7   0.3     0.0082   15.9   0.0    1.6  2  ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydro
  ------ inclusion threshold ------
      0.011   15.7   0.2      0.037   14.1   0.1    2.0  2  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
      0.013   16.0   0.1       0.19   12.4   0.0    3.0  3  ACT_4          ACT domain
      0.016   14.5   0.3      0.016   14.5   0.3    1.8  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.029   13.7   0.1      0.072   12.4   0.1    1.6  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
       0.13   12.3   0.1         11    6.1   0.0    2.9  2  NapD           NapD protein


Domain annotation for each model (and alignments):
>> malic  Malic enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   0.0     2e-31     4e-28       2     182 .]      96     228 ..      95     228 .. 0.95

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 2e-31
                 TTECCCCCCHHCCCHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS.SS..EEEEE-SSSBTTTBS-G.HHHHHHHHHHHHHH CS
       malic   2 eknetlfykllkekleellpivYtPtvgeacqeyseeyrkarglylsikdkekikeilknlpeedvkvivvtdgeriLGlGdlG.vagvgimvGKlaLy 99 
                 +k+e++ +  l+++  + l+ +YtP+v+++c +++e++ +ar  ++ ++++                v+vv+dg+++LGlG+lG +a++++m+GK+aL+
  KIR65677.1  96 GKIEVSSKVALRNR--DELSRAYTPGVARVCMAIAENPADAR-RLTIKRNT----------------VAVVSDGSAVLGLGNLGpAASLPVMEGKAALF 175
                 57888888889888..9*************************.77888888................9******************************* PP

                 HHHHS-EGGGEEEEEECS-BS.HHHHC.TT..S.SSB...SHHHHHHHHHHHHHHHHHHGCTSEEEE-S--CCHHHHHHHHHC CS
       malic 100 talagidPekvlpvvldvgtnneelledplYlGlrkkRvkgeeydefvdefveavkelfppkaliqfEDfkaknafeileryr 182
                 ++++g+d   ++pvvld++                           ++de+v++vk+++p  ++i++ED++a+++fei+ r+r
  KIR65677.1 176 KRFGGVD---AWPVVLDTQ---------------------------DTDEIVAIVKAIAPAYGGINLEDIAAPRCFEIEARLR 228
                 *******...*********...........................9*********************************997 PP

>> Malic_M  Malic enzyme, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.7   5.5e+03      28      65 ..      54      92 ..      33     104 .. 0.71
   2 ?   -2.6   0.1       1.3   2.7e+03       5      42 ..     121     158 ..     119     191 .. 0.78
   3 !   80.9   2.5   4.5e-26   8.9e-23       3     257 ..     242     461 ..     240     462 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.7
                EEEEC-SHHHHHHHHHHHHHHHTT.TS-HHHHHTTEEEE CS
     Malic_M 28 ivvlGaGsagiGiaeqivealvke.Glseeeakkkiylv 65
                +v l   +a  G a+q+v+al++  G+   + +++ +l+
  KIR65677.1 54 LVDLTCDTADAGHADQVVDALTALdGVDVRKVSDRTFLL 92
                555556678888888888888764477777777777766 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHH-S-GGG--EEEEC-SHHHHHHHH CS
     Malic_M   5 aavalagllaalkitgkklseqkivvlGaGsagiGiae 42 
                 a v +a   + + +++ +++ +++ v+  Gsa +G+ +
  KIR65677.1 121 ARVCMAIAENPADARRLTIKRNTVAVVSDGSAVLGLGN 158
                 55666666666777888899999999999999999766 PP

  == domain 3  score: 80.9 bits;  conditional E-value: 4.5e-26
                 HHHHHHHHHHHHHHHHH-S-GGG--EEEEC-SHHHHHHHHHHHHHHHTTTS-HHHHHTTEEEEETTEE-BTT-S---TTTGGGSBS--SS--S....SH CS
     Malic_M   3 gTaavalagllaalkitgkklseqkivvlGaGsagiGiaeqivealvkeGlseeeakkkiylvDrkGLltedrekleeekkpfakkkeelkeakdkltL 101
                 gTa+ +la+l +al++ gk+l++ ++vv GaG+ag+ i++++++    +G        +i  +Dr+G l+++ + l+++ + +a+++++ +    + +L
  KIR65677.1 242 GTAICVLAALTNALRVVGKQLADVRVVVSGAGAAGTAIMKLLLR----QG------VGDIIAYDRQGALHRGLTGLNPAWQWLAENTNKEN---YSGDL 327
                 9**********************************998887765....55......46799*****************9998888887766...3579* PP

                 HHHHHHH--SEEEE-SSSSS-S-HHHHHHHHHHSSS-EEEE--SSGGGSSS-HHHHHHHTTT-SEEEESS----EEETSEEE--EE--GGGTHHHHHHH CS
     Malic_M 102 eevvkkvkptvliGlsgvagafteeivremaksterPiilplSNPtskaEataedvlkwtdgkalvasGsPfkpvelngktyeigQaNNayifPglglg 200
                 + +v+   ++v iG+s+ ++++t + + +mak     i+++l NP+   E  ++++ k    +a+va+G          +  +++Q NN+++fPg+  g
  KIR65677.1 328 AGAVRG--ADVFIGVSA-PNLLTGDDIATMAKD---AIVFALANPDP--EVDPREARK---HAAVVATG----------RSDQPNQINNVLAFPGVFRG 405
                 ****97..69*****97.689999999999876...6********97..556777765...57899998..........67799*************** PP

                 HHHTT-SS--HHHHHHHHHHHHTT--HHHHHTT-SS--GGGHHHHHHHHHHHHHHHH CS
     Malic_M 201 vivarakritdemllaaaealaelvseeelkegsllPelseirevslkvavavakaa 257
                 ++ a+a++ t+em  aaa+a+a++v e++++   + P++ + r v+ +va+av  aa
  KIR65677.1 406 MLDAHAEEFTEEMAIAAARAIADVVGEDKINPTVIVPSVFDSR-VAPAVAAAVRAAA 461
                 ***************************************9865.7778888887655 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.5   3.3e-07   0.00065      14      49 ..     260     295 ..     249     297 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.3e-07
                 HHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  14 ekLrdskvllvGaGglGsellknLalsGvgkltlvD 49 
                 ++L+d++v++ GaG+ G  ++k+L + Gvg +   D
  KIR65677.1 260 KQLADVRVVVSGAGAAGTAIMKLLLRQGVGDIIAYD 295
                 789***************************997666 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.4   8.8e+03      35      53 ..     151     169 ..     139     173 .. 0.74
   2 !   15.9   0.0   4.1e-06    0.0082       4      74 ..     237     307 ..     235     381 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.4
                    EEEE--SHHHHHHHHHHHH CS
  ELFV_dehydrog  35 vaisGsGnvgsyaalllte 53 
                     a+ G Gn+g +a l ++e
     KIR65677.1 151 SAVLGLGNLGPAASLPVME 169
                    4788999999888776655 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 4.1e-06
                    TTTTTHHHHHHHHHHHHHHHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEESSEEEEE.TTEE CS
  ELFV_dehydrog   4 ldrpeaTglGvvyyveemlkklkldslegkrvaisGsGnvgsyaallltelgakvvavsDssGviyd.peGl 74 
                    +d ++ T++ v++++ ++l+ ++ + l++ rv++sG G  g + ++ll ++g   +   D +G+++   +Gl
     KIR65677.1 237 HDDQHGTAICVLAALTNALRVVGKQ-LADVRVVVSGAGAAGTAIMKLLLRQGVGDIIAYDRQGALHRgLTGL 307
                    677888999999*********7777.**************************9999999*****99514555 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.6   9.2e+03     110     119 ..     214     225 ..     205     237 .. 0.70
   2 ?   14.1   0.1   1.8e-05     0.037       7      49 ..     258     301 ..     252     382 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.6
                   E--SS-..SB-T CS
  Shikimate_DH 110 DiavPR..dvep 119
                   Dia PR  ++e+
    KIR65677.1 214 DIAAPRcfEIEA 225
                   999999444444 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.8e-05
                   HS...TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHH CS
  Shikimate_DH   7 le.slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlera 49 
                   ++ +l++ +v++ GaG  ++ ++k Ll++gv +++   R+ +  
    KIR65677.1 258 VGkQLADVRVVVSGAGAAGTAIMKLLLRQGVGDIIAYDRQGALH 301
                   444899*****************************999986544 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.3e-05      0.19       4      75 ..      10      80 ..       7      82 .. 0.93
   2 ?   -2.7   0.0       4.7   9.4e+03      20      42 ..     120     142 ..     119     148 .. 0.81
   3 ?   -1.8   0.0       2.5     5e+03      11      21 ..     291     301 ..     290     302 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.3e-05
       ACT_4  4 sytvrleveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdvehLsrviakLraipgV 75
                 + +++++ +  +   ++++t+ + e++a ++++ +++ +    + +++t    d+ h ++v+++L a++gV
  KIR65677.1 10 GFSITIRISVPADASSIGRLTTSVGEAGAIVTALDVVDSD-PTHVLVDLTCDTADAGHADQVVDALTALDGV 80
                68999999999999999*********************76.56999*************************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.7
       ACT_4  20 Laditqviseekanivsvnaktr 42 
                 +a+++ +i+e+ a+ + +++k +
  KIR65677.1 120 VARVCMAIAENPADARRLTIKRN 142
                 58899999999999998888874 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.5
       ACT_4  11 veaedrkglLa 21 
                 ++a+dr+g+L 
  KIR65677.1 291 IIAYDRQGALH 301
                 89******996 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.3   2.7e+03     106     130 ..      36      60 ..      26      65 .. 0.70
   2 ?   14.5   0.3     8e-06     0.016      27     128 ..     263     364 ..     249     366 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.3
                  ---SC-HHHHHTS-TTEEEEETTGG CS
  AlaDh_PNT_C 106 aPkLvteemvksMkpgsVivDvAid 130
                  a  +vt+  v    p  V+vD+ +d
   KIR65677.1  36 AGAIVTALDVVDSDPTHVLVDLTCD 60 
                  5556666666666777777777776 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 8e-06
                  ---EEEEESTSHHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTTCECEE......HCHHHHHHHHHHHH-SEEEE---BTTSS---SC-HHHHHT CS
  AlaDh_PNT_C  27 epakvlviGgGvaGlqAiatakglga.kVtvlDvrparleqleslgakfvev......lksqeellaeavkeadvvigtvlipGkkaPkLvteemvks 117
                  +  +v+v G+G aG++ ++   + g  ++ ++D + a  + l  l+    +       +++ +  la av+ adv ig       +aP+L+t + +++
   KIR65677.1 263 ADVRVVVSGAGAAGTAIMKLLLRQGVgDIIAYDRQGALHRGLTGLNPA-WQWlaentnKENYSGDLAGAVRGADVFIG------VSAPNLLTGDDIAT 353
                  46689***************999986489**************97776.33324344344555567788888888886......59************ PP

                  S-TTEEEEETT CS
  AlaDh_PNT_C 118 MkpgsVivDvA 128
                  M + +++  +A
   KIR65677.1 354 MAKDAIVFALA 364
                  *****997666 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   3.6e-05     0.072      27      69 ..     255     298 ..     233     308 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.6e-05
                   CCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSH CS
  2-Hacid_dh_C  27 kallgkelsgktvGiiGlGrIGqavakrlkafgm.kviaydrsk 69 
                    ++ gk+l++ +v + G+G+ G+a++k+l   g+ ++iaydr+ 
    KIR65677.1 255 LRVVGKQLADVRVVVSGAGAAGTAIMKLLLRQGVgDIIAYDRQG 298
                   567899***************************99******985 PP

>> NapD  NapD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0057        11      11      35 ..      63      87 ..      61      91 .. 0.88
   2 ?    2.6   0.0      0.07   1.4e+02      41      59 ..     186     204 ..     186     211 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0057
        NapD 11 rperlaavkaalaalpgvEvhasde 35
                + ++ ++v +al+al+gv+v  +++
  KIR65677.1 63 DAGHADQVVDALTALDGVDVRKVSD 87
                67899***************98876 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.07
        NapD  41 vviEaesedeladtieaie 59 
                 vv++++++de++++++ai+
  KIR65677.1 186 VVLDTQDTDEIVAIVKAIA 204
                 8****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3332.15
//
Query:       KIR65678.1  [L=483]
Description: ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-33  113.6   0.0    1.5e-32  112.1   0.0    1.8  2  GTP-bdg_N     GTP-binding GTPase N-terminal
    7.6e-30  103.3   9.0    7.6e-30  103.3   9.0    2.8  3  GTP-bdg_M     GTP-binding GTPase Middle Region
    2.2e-20   72.8   0.0    5.2e-20   71.6   0.0    1.6  1  MMR_HSR1      50S ribosome-binding GTPase
    4.4e-07   29.6   0.0    8.3e-07   28.7   0.0    1.5  1  FeoB_N        Ferrous iron transport protein B
    1.6e-05   24.9   0.0       0.11   12.4   0.0    2.3  2  RsgA_GTPase   RsgA GTPase
    0.00013   21.9   0.0    0.00024   21.1   0.0    1.4  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
    0.00016   21.4   0.6      0.037   13.6   0.0    2.9  3  cobW          CobW/HypB/UreG, nucleotide-binding domain
    0.00048   20.2   0.0     0.0016   18.5   0.0    1.8  2  Dynamin_N     Dynamin family
     0.0012   18.3   0.0     0.0021   17.5   0.0    1.3  1  SRPRB         Signal recognition particle receptor beta subun
     0.0015   18.1   0.1        0.2   11.2   0.1    2.6  1  GTP_EFTU      Elongation factor Tu GTP binding domain
     0.0063   16.9   0.8      0.023   15.1   0.2    2.1  2  AAA_16        AAA ATPase domain


Domain annotation for each model (and alignments):
>> GTP-bdg_N  GTP-binding GTPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.0   9.1e-36   1.5e-32       1      89 []      71     159 ..      71     159 .. 0.99
   2 ?   -3.2   0.0       8.8   1.4e+04      10      38 ..     280     308 ..     274     322 .. 0.75

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 9.1e-36
   GTP-bdg_N   1 eesleEleeLaktaglevvgevvqkrekpdpatyiGkGkveeikelveeeeadlvifddeLspsqqrnLekelevkViDRtqLILdIFA 89 
                 e+sl+El++La+tag +v++ ++q+r++pdpatyiG+Gkv+++ ++v +  ad+vi+d eLspsq rnLe+ ++vkV+DRt+LILdIFA
  KIR65678.1  71 ENSLTELAQLAETAGSQVLEGLIQRRSRPDPATYIGRGKVDDLGAVVLASGADTVICDGELSPSQLRNLEQRTKVKVVDRTALILDIFA 159
                 679*************************************************************************************8 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.8
   GTP-bdg_N  10 LaktaglevvgevvqkrekpdpatyiGkG 38 
                 L+++a + +++ ++ k  +pd ++y  ++
  KIR65678.1 280 LVENALFATLDPTTRKATAPDGRIYTLSD 308
                 77888888888888888888888876555 PP

>> GTP-bdg_M  GTP-binding GTPase Middle Region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1         1   1.7e+03      46      71 ..      21      46 ..      18      55 .. 0.82
   2 ?   -1.0   0.0       1.7   2.7e+03      10      35 ..      45      70 ..      42      92 .. 0.75
   3 !  103.3   9.0   4.7e-33   7.6e-30       1      79 []     161     249 ..     161     249 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1
                XXHHHHHHHHHHHHHHHHHHHHHHHH CS
   GTP-bdg_M 46 kleldrrlireriaklkkeLekvkkk 71
                + el +r+  +r+  l +eL ++ + 
  KIR65678.1 21 EFELSERQALRRVPGLSTELTDITEV 46
                57899999999**9****99999765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.7
                HHHHHHHHHHHHHHCXXXXXXXXX.. CS
   GTP-bdg_M 10 QVelAqlkyllprLeglgkelsrqgG 35
                 Ve  ql+ ++  L+g ++e +++ +
  KIR65678.1 45 EVEYRQLRLERVVLVGVWTEGTQTDA 70
                57777888888888899999888754 PP

  == domain 3  score: 103.3 bits;  conditional E-value: 4.7e-33
                 H--SHHHHHHHHHHHHHHHHHHHCXXXXXXXXX..X............XXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHH.....T CS
   GTP-bdg_M   1 rArtkeaklQVelAqlkyllprLeglgkelsrqgGg..........igtrGpGetkleldrrlireriaklkkeLekvkkkrelqrkkR 79 
                 +A++ke+++QVelAql+yllprL+g+g++lsrq+Gg          +g+rGpGetkle+drr+ir+ri++l++e++++++ r+++r++R
  KIR65678.1 161 HAKSKEGRAQVELAQLEYLLPRLRGWGETLSRQTGGsgrgggagggVGVRGPGETKLETDRRRIRHRISRLRREIKAMRTVRQTKRARR 249
                 9********************************775444444443366***************************************98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   3.2e-23   5.2e-20       2     114 .]     257     375 ..     256     375 .. 0.77

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 3.2e-23
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE.ETTEEEEEEECGGCSSHHHHHHHHHHHHHH....HHCTSEEEEEEETT....TTCSH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk.lkgkeielvDtpGliegaseekglgkafla....leeadlillvvdas....eeklk 91 
                 vai+G++N+GKS+L+n+ltg+ + v++  ++T+d+++++ +  +g+ ++l Dt+G++   +  +++ +af++    + e+dl+++vvd +    ee+++
  KIR65678.1 257 VAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTTRKATaPDGRIYTLSDTVGFVR--HLPHQIVEAFRStleeVAESDLVVHVVDGThpdpEEQVR 353
                 89*********************************999988566799********775..55556666666532226679********66555544455 PP

                 HHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  92 pldeeleelleeakkplilvlnk 114
                 +++e l+e+   ++ p +lv+nk
  KIR65678.1 354 AVREVLAEVG-ADRLPELLVVNK 375
                 5545555543.377888999997 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   5.1e-10   8.3e-07       3     154 ..     257     410 ..     255     412 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 5.1e-10
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT.EEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGH..HHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg.keveivDlPGiYslsayseeekvardflleeepdvvvnvvdatnl..ernLyLt 98 
                 va++G  n+Gk++l+n+ltga   v N    t + ++ k +  + + +++ D  G     ++ + e    ++    e d+vv+vvd t+   e ++  +
  KIR65678.1 257 VAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTTRKATAPDgRIYTLSDTVGFVRHLPHQIVEAFRSTLEEVAESDLVVHVVDGTHPdpEEQVRAV 355
                 89********************************999999986658899*******999999999988777777899**********986334555544 PP

                 HH.HHHTT...SSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH CS
      FeoB_N  99 lq.llelg...vpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieellk 154
                  + l+e+g   +p +l++n++d+a+++ + + l    ++L  + v +sa++++gi+e+++
  KIR65678.1 356 REvLAEVGadrLPELLVVNKTDAADEETL-LRL----KRLWPDAVFASARSGRGIDEVRA 410
                 44156776333678999999999987754.222....34455666677777777777665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00034      0.55     101     122 ..     256     277 ..     217     312 .. 0.81
   2 !   12.4   0.0   6.9e-05      0.11      13      99 ..     331     414 ..     319     417 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00034
                  EEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpe 122
                   ++++G + +GKS+L+n+l++ 
   KIR65678.1 256 AVAIAGYTNAGKSSLLNRLTGA 277
                  5789***************986 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 6.9e-05
                  EES--EEEEEEEST..TTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  13 vaNvdqllivvslk..epelslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkd 99 
                  va  d ++ vv  +  +pe +++ +  +L+++ + +++ ++v+nK+D ++ee+       +l++l  + ++ sa++++g++e++++++ 
   KIR65678.1 331 VAESDLVVHVVDGThpDPEEQVRAVREVLAEVGADRLPELLVVNKTDAADEET-----LLRLKRLWPDAVFASARSGRGIDEVRAAIET 414
                  6666666655544401466677899************************9999.....5555666688899999999999999988876 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.5e-07   0.00024      57     100 ..     368     412 ..     355     417 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.5e-07
  MMR_HSR1_Xtn  57 pclyvlNKiDlisleeldelare.pnsvviSaekelnldeLkeki 100
                   p l+v+NK+D++++e+l +l+r  p++v+ Sa+++ ++de+  +i
    KIR65678.1 368 PELLVVNKTDAADEETLLRLKRLwPDAVFASARSGRGIDEVRAAI 412
                   889*******************769***************99887 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.69   1.1e+03     108     143 ..     137     175 ..     119     177 .. 0.69
   2 ?    4.5   0.0     0.014        24       1      21 [.     255     275 ..     255     287 .. 0.88
   3 !   13.6   0.0   2.3e-05     0.037      96     159 ..     317     385 ..     303     394 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.69
                 HCCCECEEEEEEETTTH....CCHCCHHHHHHHHHHTSS CS
        cobW 108 sdltldavvavvDaknl...eaeeekieekaedqlaaad 143
                 ++l+  ++v vvD ++l     +++ ++++++ q++ a 
  KIR65678.1 137 RNLEQRTKVKVVDRTALildIFAQHAKSKEGRAQVELAQ 175
                 456677888888887777773456667777777777765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.014
                 EEEEEEESTTCCHHHHHHHHH CS
        cobW   1 pvtvltGflGsGKTtLlnhll 21 
                 p++ ++G+  +GK++Lln+l+
  KIR65678.1 255 PAVAIAGYTNAGKSSLLNRLT 275
                 67899*************997 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 2.3e-05
                 HHHHHTT.SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHH......TSSEEEEE-HHHHCHC..H CS
        cobW  96 Papvaft.eeelksdltldavvavvDaknleaeeekieekaedqla......aadllvlnKtDlldeeall 159
                 P +++    ++l++ ++ d vv vvD+++   + e++ + +++ la        +llv+nKtD +dee+ll
  KIR65678.1 317 PHQIVEAfRSTLEEVAESDLVVHVVDGTHP--DPEEQVRAVREVLAevgadrLPELLVVNKTDAADEETLL 385
                 44453235889999*************886..4555555555555411111145799*********99763 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0     1e-06    0.0016       1      36 [.     257     292 ..     257     300 .. 0.88
   2 ?   -2.1   0.0       2.2   3.5e+03     103     141 ..     304     346 ..     293     375 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1e-06
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-E CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrpl 36 
                 +a+ G +++GKSS+ln L+g+ +l+  +   T  p+
  KIR65678.1 257 VAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPT 292
                 7899********************998887776665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.2
                 EEEEE---B-SSSGTTS....HHHHHHHSTTEEEEEEEETTS- CS
   Dynamin_N 103 ltlvDlPGldsvnkrdq....elvkeyikkadiilavtsanhd 141
                 +tl D+ G+ +   ++     + + e + ++d++++v++  h 
  KIR65678.1 304 YTLSDTVGFVRHLPHQIveafRSTLEEVAESDLVVHVVDGTHP 346
                 5677777777744433366666677777888999999988774 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.3e-06    0.0021       3     104 ..     254     364 ..     252     379 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.3e-06
                 --EEEEE-STTSSHHHHHHHHHHS..S---B---SS-EEETTG...GGTT-SEEEETT-GC.CSHHHHHHHHHH....GGEEEEEEEEETTS.-.HHHH CS
       SRPRB   3 kpavllvGlsdsGKTslftrLttd..svkktvtSqessaalkvksekgskltliDfPGhek.lrqklleklkak....sslkglvfvvDSti.d.pkev 92 
                  pav ++G +++GK sl++rLt     v+++  +    ++ k ++ +g   tl D  G ++ l ++++e ++      ++   +v+vvD t  d + +v
  KIR65678.1 254 VPAVAIAGYTNAGKSSLLNRLTGAgvLVENALFATLDPTTRKATAPDGRIYTLSDTVGFVRhLPHQIVEAFRSTleevAESDLVVHVVDGTHpDpEEQV 352
                 6899******************9877777888888777788888**************986589999987654311013455699****9973324579 PP

                 HHHHHHHHHHHH CS
       SRPRB  93 kevAEllyeill 104
                 + v E l e+  
  KIR65678.1 353 RAVREVLAEVGA 364
                 999999998865 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   0.00012       0.2      90     139 ..     330     383 ..     252     418 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
                 HHHT-SEEEEEEETTTB.STHHH...HHHHHHHHHTTTEEEEEEESCGSTHHHH CS
    GTP_EFTU  90 glrvlDgavlvvdaveG.vepqt...eevlrlalkegvpiivfiNKmDrlkael 139
                  ++  D++v vvd ++  +e+q    +evl  + + ++p  +++NK D +++e 
  KIR65678.1 330 EVAESDLVVHVVDGTHPdPEEQVravREVLAEVGADRLPELLVVNKTDAADEET 383
                 36778999999998843366665111566666666777899********97665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.1   1.8e+03      70     162 ..      78      96 ..      35     174 .. 0.67
   2 !   15.1   0.2   1.4e-05     0.023       7     152 ..     233     384 ..     229     394 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.1
      AAA_16  70 salaqalareellrqlldeaesaeleawrekleealaavpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrll 162
                 ++la+++  +++l+ l ++                                                                         +
  KIR65678.1  78 AQLAETA-GSQVLEGLIQR-------------------------------------------------------------------------R 96 
                 3344444.22333333333.........................................................................2 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.4e-05
      AAA_16   7 eeleqLlsale..rvrsgrp..elvllsGesGvGKsslvrellralekdggif...lrgkcdql..esaipysalaqalareellrqlldeaesaelea 96 
                 +e+++++++ +  r+r++r   ++v + G+   GKssl+++l     ++g+++   l ++ d    ++ +p   + ++ ++ +++r l  +     +ea
  KIR65678.1 233 REIKAMRTVRQtkRARRSRNavPAVAIAGYTNAGKSSLLNRLT----GAGVLVenaLFATLDPTtrKATAPDGRIYTLSDTVGFVRHLPHQ----IVEA 323
                 6777776666633444444489*****************8887....45455544444444444213334434477777777888888888....8899 PP

      AAA_16  97 wrekleeala.................avpelagaeasrllellkrllallsrderplvlvlDdlqwadeasl 152
                 +r +lee+++                 +v        ++++e+l++       d+ p +lv+   + ade++l
  KIR65678.1 324 FRSTLEEVAEsdlvvhvvdgthpdpeeQV--------RAVREVLAEVG----ADRLPELLVVNKTDAADEETL 384
                 99999999998887776653333333333........33333333333....323344666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 3507.78
//
Query:       KIR65679.1  [L=563]
Description: hypothetical protein TK50_09990 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0017   18.3   0.4        1.2    9.2   0.1    3.8  4  PD40             WD40-like Beta Propeller Repeat
  ------ inclusion threshold ------
      0.017   15.1   0.0       0.64    9.9   0.0    2.3  2  Phytase-like     Esterase-like activity of phytase
        3.4    7.9   5.6        0.5   10.6   1.4    1.8  2  Pollen_allerg_2  Ribonuclease (pollen allergen)


Domain annotation for each model (and alignments):
>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.025   1.5e+02       7      23 ..     100     116 ..      98     119 .. 0.77
   2 ?   -3.4   0.0       1.8   1.1e+04      16      24 ..     167     175 ..     163     187 .. 0.65
   3 ?    1.6   0.0     0.046   2.8e+02      15      23 ..     232     240 ..     214     241 .. 0.80
   4 !    9.2   0.1    0.0002       1.2      12      32 ..     278     299 ..     270     306 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.025
                 SSS.EEEEEE-TTSSEE CS
        PD40   7 tpgnegaPsfSPDGkrl 23 
                 +p + ++ ++SPDG +l
  KIR65679.1 100 GPLDTEDLALSPDGETL 116
                 5556677799****987 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.8
                 E-TTSSEEE CS
        PD40  16 fSPDGkrla 24 
                 +S DGk l+
  KIR65679.1 167 ISDDGKPLI 175
                 588888555 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.046
                 EE-TTSSEE CS
        PD40  15 sfSPDGkrl 23 
                 + SPDGk+ 
  KIR65679.1 232 ARSPDGKKV 240
                 559****86 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0002
                 EEEEE-TTSSEEEEEEECT..T CS
        PD40  12 gaPsfSPDGkrlaFsSdRg.sG 32 
                 +a+s++PDGk+++ +Sd+g +G
  KIR65679.1 278 EAISYTPDGKSFVTVSDGGeLG 299
                 899**********999988655 PP

>> Phytase-like  Esterase-like activity of phytase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00011      0.64      43     100 ..      71     145 ..      35     211 .. 0.65
   2 ?    2.8   0.0     0.016        97       8      27 ..     279     299 ..     277     347 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00011
  Phytase-like  43 klgkveitevtplkdpd...........gapfpkkglDpEgiav.apdgtfwvssEgg..........pfilefdadGkl 100
                   + +++e  ++++++d +           +       lD+E++a+ ++++t+w+++ g+           +++ + adG+ 
    KIR65679.1  71 DGTTIEARKRVFFLDTKcqvtkevrysgN-----GPLDTEDLALsPDGETLWIADIGDnitstqrrerVAVWSMPADGSA 145
                   34455555555555555455443222212.....345*******777779999998776666666655555555555555 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.016
  Phytase-like   8 glaydpkdgrfyalsDrgs.k 27 
                   +++y+p++++f+++sD g   
    KIR65679.1 279 AISYTPDGKSFVTVSDGGElG 299
                   578888888888888888753 PP

>> Pollen_allerg_2  Ribonuclease (pollen allergen)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.4   8.3e-05       0.5       1      46 [.       9      54 ..       9      78 .. 0.81
   2 ?   -2.9   0.2       1.2   6.9e+03      19      59 ..     307     349 ..     301     356 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.3e-05
  Pollen_allerg_2  1 tvalflavalvagpavsyaayapgapatpaapgtqpkattpeqklm 46
                     tval l  a va   v+ aa apga a+p     + ++t  +++l 
       KIR65679.1  9 TVALGLLGATVALTGVALAAPAPGAAAAPEPTPGKKRCTVTDERLR 54
                     899*************************975444555565555554 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.2
  Pollen_allerg_2  19 aayapgapatpaapgtq..pkattpeqklmedinngfkaavaa 59 
                       ay+p +  + a  g +  p   + e+  me +     + + a
       KIR65679.1 307 LAYTPATTGAEALTGGDagPPKPAAEKSWMEGLSLDEITYLIA 349
                      5666655555554443211333445666666655544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4169.90
//
Query:       KIR65680.1  [L=261]
Description: ArsR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-27   93.5   0.0    7.8e-27   92.9   0.0    1.3  1  LexA_DNA_bind   LexA DNA binding domain
    1.8e-15   56.6   0.0    2.8e-15   56.0   0.0    1.3  1  Peptidase_S24   Peptidase S24-like
    8.1e-06   25.6   0.0    1.7e-05   24.6   0.0    1.6  1  MarR_2          MarR family
      5e-05   23.1   0.0    9.7e-05   22.2   0.0    1.5  1  MarR            MarR family
    0.00051   19.5   0.0     0.0013   18.2   0.0    1.7  1  HTH_24          Winged helix-turn-helix DNA-binding
     0.0065   16.7   0.0       0.01   16.0   0.0    1.3  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0091   16.0   0.0      0.016   15.2   0.0    1.4  1  HTH_20          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.031   14.2   0.0      0.051   13.6   0.0    1.3  1  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.037   14.4   0.0       0.06   13.7   0.0    1.3  1  FaeA            FaeA-like protein
      0.051   14.1   0.0      0.096   13.2   0.0    1.4  1  HTH_27          Winged helix DNA-binding domain
      0.077   12.8   0.0       0.14   11.9   0.0    1.4  1  HTH_IclR        IclR helix-turn-helix domain
       0.18   12.4   0.0       0.29   11.7   0.0    1.3  1  DsrC            DsrC like protein


Domain annotation for each model (and alignments):
>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0   5.2e-30   7.8e-27       3      65 .]      55     117 ..      53     117 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 5.2e-30
                    ---HHHHHHHHHHHHHHHHHSS---HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GGG-CCG CS
  LexA_DNA_bind   3 kLTerQrevldlikasieetgypPsireiaralglkSpsaveehLkaLerKGyierdpgkpRa 65 
                    +LT+rQr++l++i+  +e++gypPs+rei++a+gl Sps+v+ +Lk Le+KG+++rdp++pRa
     KIR65680.1  55 DLTARQRRILEFIRTWVERHGYPPSVREIGEAVGLVSPSSVAYQLKELEKKGFLRRDPNRPRA 117
                    7*************************************************************8 PP

>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   1.9e-18   2.8e-15       1      66 [.     180     244 ..     180     248 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 1.9e-18
                    EXXSSTT.CCTXXTTXEEEEECTS---TTSEEEEEETTCE-EEEEEEEEETTEEEEE.SSTTSTEEE CS
  Peptidase_S24   1 rvpGdSM.eptlldGdlilVdkfsepkrGdivvfrlpgeeeayiKrviglpgdrvllasnneypply 66 
                    +v+GdSM ++ + dGd ++V+++++++ Gdiv++ l+ge  a++K + +++g+++l+++n+  +p+ 
     KIR65680.1 180 QVKGDSMlDAAICDGDWVVVRQQPTAEAGDIVAAMLDGE--ATVKTYRRRDGHVWLMPQNPAFDPIP 244
                    69*****99******************************..*******************9988876 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.2e-08   1.7e-05       2      56 ..      55     113 ..      54     117 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.2e-08
                 T--HHHHHHHHHHHCTTTS...EEEHHHHHH.HHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2   2 gltpaqarvLaaLgrrpgr...dltvgelar.rlglsksavsrilkrLvaaGLverrpg 56 
                 +lt  q+r+L +++   +r   + +v+e+ +    +s+s+v + lk+L+++G+++r p+
  KIR65680.1  55 DLTARQRRILEFIRTWVERhgyPPSVREIGEaVGLVSPSSVAYQLKELEKKGFLRRDPN 113
                 79************9888888878*******5556799*****************9887 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   6.5e-08   9.7e-05      17      52 ..      77     113 ..      56     114 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 6.5e-08
                 TEEHHHHHHHHT.S-HHHHHHHHHHHHHTTSEEEEEE CS
        MarR  17 plsvseLakklg.vskstvtrvldrLekkGlieRsks 52 
                 p+sv e+++++g vs+s+v  +l++LekkG+++R ++
  KIR65680.1  77 PPSVREIGEAVGlVSPSSVAYQLKELEKKGFLRRDPN 113
                 5889999999984699******************876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   8.8e-07    0.0013       5      48 .]      60     109 ..      56     109 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 8.8e-07
      HTH_24   5 drkILelLqk....npr.isqreLAerlgl.SpstvnrrlkrLeeeGlIk 48 
                 +r+ILe ++     ++   s re+ e++gl Sps v ++lk+Le++G+++
  KIR65680.1  60 QRRILEFIRTwverHGYpPSVREIGEAVGLvSPSSVAYQLKELEKKGFLR 109
                 677777777777777777799********77****************975 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.7e-06      0.01       1      57 [.      55     113 ..      55     115 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.7e-06
                     X--HHHHHHHHHHHHHHH.HHSSB-HHHHHHHHT.S-HHHHHHHHHHHHHTTSEEEETT CS
  Fe_dep_repress   1 dLvestEdYLetIYtlse.ekkvvktkdlaerLn.vspssVsemlkkLekdGyveyeky 57 
                     dL+++    Le I t  e  + ++++ ++ e+ + vspssV   lk+Lek+G++   + 
      KIR65680.1  55 DLTARQRRILEFIRTWVErHGYPPSVREIGEAVGlVSPSSVAYQLKELEKKGFLRRDPN 113
                     57888888899999999966667899*******989*****************987775 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-05     0.016      12      58 ..      60     112 ..      58     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-05
                 HHHHHHHH.....STCTTB-HHHHHHHHT.S-HHHHHHHHHHHHHCTTEEEEC CS
      HTH_20  12 RrrilraL.....araegltaselaerld.lskntlsyHLrvLeeagLvevvr 58 
                 +rril  +     + + + ++ e+ e+++ +s++++ y+L++Le+ g++++  
  KIR65680.1  60 QRRILEFIrtwveRHGYPPSVREIGEAVGlVSPSSVAYQLKELEKKGFLRRDP 112
                 57788888887777778889999999999899*****************9875 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.4e-05     0.051      20      54 ..      76     113 ..      57     124 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.4e-05
                 EEHHHHHHHHHTT.SSHHHHHHHHHHHHHTTSEEE..T CS
   HTH_Crp_2  20 lpltqeelAsmlG.ltretvsrilseLkreglisr..g 54 
                  p + +e+++ +G +++++v   l+eL+++g ++r  +
  KIR65680.1  76 YPPSVREIGEAVGlVSPSSVAYQLKELEKKGFLRRdpN 113
                 588999***************************96233 PP

>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     4e-05      0.06       4      51 ..      62     114 ..      59     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4e-05
                 HHHHHHHH.....S----HHHHHHHHTS.-HHHHHHHHHHHHHHSSEEEE--S CS
        FaeA   4 eIleylnsi....kapckTreiAdalgl.saYQaRyYLeqLekegkikrspvr 51 
                  Ile++       + p   rei +a+gl s   + y L+ Lek+g ++r p r
  KIR65680.1  62 RILEFIRTWverhGYPPSVREIGEAVGLvSPSSVAYQLKELEKKGFLRRDPNR 114
                 688888776677688999*********6388899999************9977 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.4e-05     0.096       1      58 [.      56     114 ..      56     121 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.4e-05
      HTH_27   1 ltrqqalvLhlir....hrrrrkkladlcgrlnved.shisyslkkLtekGLvertgdeadrr 58 
                 lt+ q+ +L+ ir    + + + + +++ +++ + + s+++y lk+L++kG++ r +     r
  KIR65680.1  56 LTARQRRILEFIRtwveRHGYPPSVREIGEAVGLVSpSSVAYQLKELEKKGFLRRDP----NR 114
                 78999999*******9777777777*****99976625566************5544....33 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.6e-05      0.14      14      52 .]      73     112 ..      62     112 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.6e-05
                 TTBSS-BHHHHHHHHTS.-HHHHHHHHHHHHHTTSEE... CS
    HTH_IclR  14 eapqeltlselArrtgl.pkStvhRlLqtLvelGyveqdg 52 
                 +++ + +++e+ ++ gl ++S+v   L+ L++ G++++d+
  KIR65680.1  73 RHGYPPSVREIGEAVGLvSPSSVAYQLKELEKKGFLRRDP 112
                 56666899********879*******************97 PP

>> DsrC  DsrC like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00019      0.29      33      71 ..      52      90 ..      42     110 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
        DsrC 33 egieLteehwevikflreyyeeygvapairklvkalkke 71
                  ++Lt ++ ++++f+r   e++g  p++r++ +a++  
  KIR65680.1 52 ATVDLTARQRRILEFIRTWVERHGYPPSVREIGEAVGLV 90
                5789****************************9999873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1726.82
//
Query:       KIR65681.1  [L=170]
Description: NrdR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-14   53.3   0.0    4.5e-14   52.8   0.0    1.3  1  ATP-cone       ATP cone domain
     0.0024   17.3   2.1       0.92    9.1   0.1    2.6  3  TF_Zn_Ribbon   TFIIB zinc-binding
  ------ inclusion threshold ------
      0.017   15.0   0.5       0.83    9.6   0.1    2.2  2  Cys_rich_CPXG  Cysteine-rich CPXCG
      0.033   15.0   1.0       0.93   10.5   0.1    2.5  2  zf-C2H2_4      C2H2-type zinc finger
       0.07   12.6   1.9        1.2    8.7   0.0    2.4  2  zf-ribbon_3    zinc-ribbon domain
      0.071   13.0   1.4       0.18   11.7   1.4    1.7  1  TFIIS_C        Transcription factor S-II (TFIIS)
       0.11   13.2   1.6        5.2    7.8   0.1    2.4  2  zf-ISL3        zinc-finger of transposase IS204/IS1001/IS1096
       0.26   11.2   1.8        4.2    7.4   0.1    2.5  2  zinc_ribbon_4  zinc-ribbon domain
       0.47   10.8   3.1        1.2    9.4   0.1    2.3  2  zinc_ribbon_9  zinc-ribbon
       0.52   10.9   4.1        0.9   10.1   0.3    2.4  2  zf-C2H2        Zinc finger, C2H2 type
       0.62   10.1   5.5        1.6    8.8   5.6    1.7  1  Zn_Tnp_IS1595  Transposase zinc-ribbon domain
          1    9.9   4.0        1.6    9.3   0.2    2.2  2  zf-H2C2_2      Zinc-finger double domain
        1.1    9.1   4.7         13    5.7   0.4    2.4  2  zinc_ribbon_2  zinc-ribbon domain
        5.7    7.1   5.7       0.83    9.7   0.2    2.3  3  zf-C2H2_6      C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   3.5e-17   4.5e-14       2      84 ..      47     132 ..      46     134 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 3.5e-17
                 EEE-TTS-EEE--HHHHHHHHHHHHHH...-HHHHHHHHHHHHHHHHHHHIIT-BHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHH CS
    ATP-cone   2 kViKRdGtvepfdvekIkraiekAceg...seeeideiaeeveaevrkrlrdgisteeIqdlvektliehpdyavaaayilyrnlr 84 
                  V+KR G +epf++ kI   + kAc+g   +e+ i  +a++ve+ +r ++ ++i++ +++  +   l++ +++a+++++++yr + 
  KIR65681.1  47 AVVKRSGVTEPFSRIKIVGGVRKACQGrpvDEDSIALLAQKVEETIRAKGAAEIPSHDVGLAILGPLRDLDEVAYLRFASVYRSFD 132
                 59***************************99999*************************************************975 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0022       2.9       1      17 [.       1      18 [.       1      23 [. 0.85
   2 !    9.1   0.1   0.00072      0.92       2      14 ..      30      42 ..      29      45 .. 0.76
   3 ?   -2.9   0.0         4   5.1e+03      24      34 ..      70      81 ..      69      82 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0022
                  EEETTTTCEE.CHEETST CS
  TF_Zn_Ribbon  1 ykCPnCgstn.lveDper 17
                  ++CP+C + +  v+D  +
    KIR65681.1  1 MRCPYCRHADsRVVDSRE 18
                  79******8889999765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00072
                  EETTTTCEECHEE CS
  TF_Zn_Ribbon  2 kCPnCgstnlveD 14
                   CP+Cg ++++++
    KIR65681.1 30 SCPECGKRFTTVE 42
                  5*******95544 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4
                  SS.SBEEEECCC CS
  TF_Zn_Ribbon 24 dC.GlVlednsi 34
                  +C G  ++++si
    KIR65681.1 70 ACqGRPVDEDSI 81
                  566666677666 PP

>> Cys_rich_CPXG  Cysteine-rich CPXCG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00065      0.83       2      19 ..       2      19 ..       1      25 [. 0.84
   2 ?    3.7   0.1     0.044        57       2      12 ..      30      40 ..      29      45 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00065
  Cys_rich_CPXG  2 qCPyCgeeievlvDlsag 19
                    CPyC +  + +vD  + 
     KIR65681.1  2 RCPYCRHADSRVVDSREA 19
                   6********999998776 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.044
  Cys_rich_CPXG  2 qCPyCgeeiev 12
                   +CP Cg+++++
     KIR65681.1 30 SCPECGKRFTT 40
                   6******9987 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.25   3.2e+02       2       6 ..       2       6 ..       2      14 .. 0.80
   2 ?   10.5   0.1   0.00073      0.93       2      14 ..      30      42 ..      29      47 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.25
   zf-C2H2_4 2 kCpiC 6
               +Cp+C
  KIR65681.1 2 RCPYC 6
               6**** PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00073
   zf-C2H2_4  2 kCpiCgksFsskk 14
                 Cp Cgk+F++ +
  KIR65681.1 30 SCPECGKRFTTVE 42
                5********9976 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.4     0.064        82       4       8 ..       2       6 ..       1       9 [. 0.72
   2 ?    8.7   0.0   0.00092       1.2       4      11 ..      30      38 ..      27      43 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.064
  zf-ribbon_3 4 rCPnC 8
                rCP+C
   KIR65681.1 2 RCPYC 6
                56666 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00092
  zf-ribbon_3  4 rCPnCGa.p 11
                 +CP+CG+  
   KIR65681.1 30 SCPECGKrF 38
                 688888755 PP

>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.4   0.00014      0.18       2      39 .]       2      39 ..       1      39 [. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
     TFIIS_C  2 kCpkCgsreayffqlQtRsaDEpmtvf..ykCtkCghrWr 39
                +Cp C++ +   +    R aD ++ +     C +Cg+r++
  KIR65681.1  2 RCPYCRHADSRVV--DSREADDGQLIRrrRSCPECGKRFT 39
                6*******99977..99*******8751167*******96 PP

>> zf-ISL3  zinc-finger of transposase IS204/IS1001/IS1096/IS1165
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2     0.049        63       3      12 ..       1      11 [.       1      19 [. 0.68
   2 ?    7.8   0.1     0.004       5.2       2      13 ..      28      40 ..      27      53 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.049
     zf-ISL3  3 hrCPnCgsk.t 12
                +rCP+C+   +
  KIR65681.1  1 MRCPYCRHAdS 11
                59****98743 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.004
     zf-ISL3  2 phrCPnCgsk.tv 13
                ++ CP+Cg++ t 
  KIR65681.1 28 RRSCPECGKRfTT 40
                678*****99643 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.3      0.09   1.2e+02      26      33 ..       1       8 [.       1       9 [. 0.84
   2 ?    7.4   0.1    0.0033       4.2       4      13 ..      30      39 ..      28      47 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.09
  zinc_ribbon_4 26 vrCskCgh 33
                   +rC+ C+h
     KIR65681.1  1 MRCPYCRH 8 
                   59999998 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0033
  zinc_ribbon_4  4 tCpsCkakye 13
                   +Cp+C+++++
     KIR65681.1 30 SCPECGKRFT 39
                   6999999997 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.9      0.44   5.6e+02      24      28 ..       3       7 ..       2       9 .. 0.84
   2 ?    9.4   0.1   0.00096       1.2      21      31 ..      23      38 ..      11      43 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.44
  zinc_ribbon_9 24 CPhCg 28
                   CP+C+
     KIR65681.1  3 CPYCR 7 
                   ****8 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00096
  zinc_ribbon_9 21 d.....vlCPhCgggF 31
                   +      +CP+Cg  F
     KIR65681.1 23 QlirrrRSCPECGKRF 38
                   36665536******99 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.3      0.38   4.9e+02       2       7 ..       2       7 ..       1       9 [. 0.84
   2 ?   10.1   0.3    0.0007       0.9       3      12 ..      31      40 ..      30      43 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.38
               EETTTT CS
     zf-C2H2 2 kCpdCg 7
               +Cp+C 
  KIR65681.1 2 RCPYCR 7
               7****5 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0007
                ETTTTEEESS CS
     zf-C2H2  3 CpdCgksFkr 12
                Cp+Cgk+F++
  KIR65681.1 31 CPECGKRFTT 40
                ********98 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   5.6    0.0013       1.6      20      45 ..       2      36 ..       1      37 [. 0.85

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0013
  Zn_Tnp_IS1595 20 vCPhCgsrkayrikt.........rglfqCkeCrk 45
                   +CP+C ++ ++ + +         r++  C eC+k
     KIR65681.1  2 RCPYCRHADSRVVDSreaddgqliRRRRSCPECGK 36
                   7*******666665556****************98 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.4      0.31     4e+02      17      21 ..       3       7 ..       2       9 .. 0.82
   2 ?    9.3   0.2    0.0012       1.6      17      26 .]      31      40 ..      27      40 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.31
   zf-H2C2_2 17 CplCd 21
                Cp+C+
  KIR65681.1  3 CPYCR 7 
                ****8 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0012
   zf-H2C2_2 17 CplCdkaFkt 26
                Cp+C+k+F+t
  KIR65681.1 31 CPECGKRFTT 40
                ********97 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.4     0.016        21      16      21 ..       3       8 ..       1       9 [. 0.87
   2 ?    5.7   0.4      0.01        13       2       7 ..      31      36 ..      28      38 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.016
  zinc_ribbon_2 16 CpyCGt 21
                   CpyC++
     KIR65681.1  3 CPYCRH 8 
                   ****98 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.01
  zinc_ribbon_2  2 CpnCGa 7 
                   Cp+CG+
     KIR65681.1 31 CPECGK 36
                   666665 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2       1.6     2e+03       3       7 ..       2       6 ..       2       7 .. 0.90
   2 ?    9.7   0.2   0.00065      0.83       4      13 ..      31      40 ..      28      41 .. 0.90
   3 ?   -2.4   0.0         4   5.1e+03      10      17 ..     127     134 ..     127     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.6
   zf-C2H2_6 3 eCsvC 7
               +C++C
  KIR65681.1 2 RCPYC 6
               6**** PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00065
   zf-C2H2_6  4 CsvCsksFps 13
                C++C+k+F +
  KIR65681.1 31 CPECGKRFTT 40
                ********87 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4
   zf-C2H2_6  10 sFpslqaL 17 
                 +++s+++L
  KIR65681.1 127 VYRSFDSL 134
                 68899887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.52
# Mc/sec: 989.55
//
Query:       KIR65682.1  [L=317]
Description: hypothetical protein TK50_10010 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-82  276.7  13.7    2.3e-80  270.6  13.7    2.0  1  DUF2332   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2332  Uncharacterized protein conserved in bacteria (DUF2332)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.6  13.7   1.3e-84   2.3e-80       2     335 .]      11     315 ..      10     315 .. 0.94

  Alignments for each domain:
  == domain 1  score: 270.6 bits;  conditional E-value: 1.3e-84
     DUF2332   2 erfrrfaeaeaagsSplyarlaravaddlealgllaaapagdavpllllaalhrlvlagraheLaayYpslggdaaaeelwaafrefllehedelrall 100
                 + + +fa++ea+g Sp y+rlar+va+d +++ ll+++p+++++p+ll+a ++ l                 +d+      aaf ef ++h+ e++a l
  KIR65682.1  11 ASYVEFADREARGVSPAYERLARSVARDGRLHALLGTVPEAKRQPNLLFAVVRLLGGPV-------------EDP------AAFGEFAAAHWPEVAAQL 90 
                 56889***********************************************9664333.............344......48**************** PP

     DUF2332 101 atrpvQTNEvgRaavLlpalaavaeavarplallEvGaSAGLnLlldryayryeggelGdadspvvlaaawrgerppplpavevvsrvGlDlnpldltd 199
                 +tr +QTNE+gR+a+Llp+laa+    ++plallEvGaSAGL L++dryayry++ ++G    + vl++a++g++pp  ++  v++r+GlDlnpld+td
  KIR65682.1  91 RTRATQTNEAGRCAALLPVLAAL----PQPLALLEVGASAGLCLYPDRYAYRYGDHRVGS--GEPVLDCALTGAAPPN-RRPVVAWRAGLDLNPLDVTD 182
                 *********************96....9*******************************9..6779********5444.4445**************** PP

     DUF2332 200 eedalwLrAlvWpdqpeRlarleaAlalaredppelvrgdavdlLpaalaevpadallvVfhsivlqylpaeeraallaalaelgaerplawvslEadg 298
                 ++d++wL AlvWp+++ R+arl+aA a+a++dpp lvrgd+vd+Lpa++a++pa+a+lvVfh+ vl  +pa +raa+ +++++l    p +w+++E++ 
  KIR65682.1 183 PADVAWLDALVWPEHTYRRARLRAASAVAAADPPLLVRGDLVDDLPALAARAPAGATLVVFHTSVLYLVPAPRRAAFADLVRTL----PGHWLANETPE 277
                 ************************************************************************************....99******999 PP

     DUF2332 299 va.....gaaeeaelglrlwpggeereealaradpHGrwleW 335
                 v       ++ + +l+ +l  +g    + la++ pHG+ ++W
  KIR65682.1 278 VLghdalPEPPDGTLHNVLTLDG----TPLAWTRPHGQAVTW 315
                 889999999999***********....5699*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2282.60
//
Query:       KIR65683.1  [L=482]
Description: peptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-10   39.0   0.0    8.4e-09   35.4   0.0    2.0  1  Abhydrolase_1  alpha/beta hydrolase fold
    1.7e-07   30.8   0.2    3.5e-05   23.2   0.1    2.2  2  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   9.4e-13   8.4e-09       1     257 []     195     463 ..     195     463 .. 0.74

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 9.4e-13
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB..CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin.ddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyp 95 
                    pvl++++G pg+s++   r    +L++ +f v + D  G ++S  a  + +  d + a++ ++ + ++ ++g d+++l++hS G+  +l + ++ p
     KIR65683.1 195 PVLLVVPGPPGGSEIGSVRRHLADLER-HFVVATWDRAGAPKSWSAFPPAPtLDGEVADLVAVAEHLRRRFGRDRVHLLAHSGGTIPGLLAVQRRP 289
                    79*********9998444335557776.9999999******995544444446789999999999******************************* PP

                    GGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH................HCHHHCCHHHHH CS
  Abhydrolase_1  96 erVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf................pdkskrfpssgs 175
                    e  ++ v +g      sl+ea+  q +    +++++  ++   ++  ++  ++  ++ +  l   l +                            
     KIR65683.1 290 ELFASYVGVGQ---VVSLREADASQHADTVAWARRTGRADLADRMSAQGPPPYEDIWAYEPL---LTNepaafdfdrsgnsegaG----------- 368
                    ***********...999999999999999999999999999999999999999999999544...22222333333333333322........... PP

                    HHCHHHHHHHHHHHHHHHHCCHHHHHHHHHC.................THHHHSEEEEEEETTCSSSCHHHHHHHHHC..HTSEEEEEEETCSSSH CS
  Abhydrolase_1 176 dnasslatgalksieqwpttdsaklllrlre.................lknvlaptlvisgtsDplvppkaledlaql..lpkkrlvvisdagHla 252
                            ++ + + ++p + +a+ll  +                   ++   +pt+++ g+++     + l+++ ++   p+k++vvi++agH +
     KIR65683.1 369 ------GVVENLGVPEYPLLEKAHLLPGFIDgwdalyprlqgldfraeVRRLDVPTYLVDGEHEVPGRLRLLDQWYAQlqAPRKEHVVIPGAGHRS 458
                    ......22333444444444444444433334566666666666655777777799999888887777777777666667677999999****999 PP

                    HHHSH CS
  Abhydrolase_1 253 flegp 257
                    ++++p
     KIR65683.1 459 LFQRP 463
                    99875 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   3.9e-09   3.5e-05      30     128 ..     221     318 ..     193     334 .. 0.86
   2 !    5.4   0.0    0.0011       9.7     184     236 ..     408     460 ..     401     462 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.9e-09
  Hydrolase_4  30 qGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikaklkappllklll 127
                  + f v+++D  G  +s  +    p +d  v+Dl a+ e+++++ ++ ++ ll+hS G +  ll+++r+p+ +a  + ++ ++++++  +a++ +  ++
   KIR65683.1 221 RHFVVATWDRAGAPKSWSAFPPAPTLDGEVADLVAVAEHLRRRFGRDRVHLLAHSGGTIPGLLAVQRRPELFASYVGVGQVVSLREA-DASQHADTVA 317
                  56899*****************************************************************99999999999998865.4666666555 PP

  Hydrolase_4 128 k 128
                  +
   KIR65683.1 318 W 318
                  5 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0011
  Hydrolase_4 184 eeraakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHelln 236
                  ++++ ++++P+ l+ Ge++     +   + y++l++ +k+  ++pg+ H  l+
   KIR65683.1 408 RAEVRRLDVPTYLVDGEHEVPGRLRLLDQWYAQLQAPRKEHVVIPGAGHRSLF 460
                  56778999*****************************************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3440.51
//
Query:       KIR65684.1  [L=226]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-19   67.9   0.0    2.1e-18   66.8   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    7.4e-16   58.6   0.0    1.4e-15   57.7   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    4.7e-14   52.5   0.0    5.7e-14   52.3   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    2.2e-07   31.5   0.0    6.1e-07   30.1   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
    6.5e-07   29.3   0.0    1.2e-06   28.4   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
     0.0072   15.7   0.0       0.01   15.2   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
       0.12   12.3   0.1       0.34   10.9   0.1    1.8  2  Methyltransf_17  S-adenosyl-L-methionine methyltransferase
       0.13   11.7   0.0       0.21   11.0   0.0    1.3  1  TehB             Tellurite resistance protein TehB
       0.22   11.3   0.0       0.35   10.6   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   1.1e-21   2.1e-18       1      97 []      60     150 ..      60     150 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 1.1e-21
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      v+++GcGtGr+t++l    g  +v g+D+s++m++ are      + ++f ++++++lp++dg     v+++++ hl+++ l+++++e++rvL 
       KIR65684.1  60 VVEVGCGTGRVTAHLRGL-G-LDVAGLDLSPGMVAVARESW----PGLRFAVASMTALPLPDGGLAGLVAWYSIIHLPPAALPAVFAEFHRVLA 147
                      89*************988.5.********************....89**************************9999***************** PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       KIR65684.1 148 PGG 150
                      **9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   6.8e-19   1.4e-15       2      95 ..      62     153 ..      61     154 .. 0.89

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 6.8e-19
                      EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvLkpgGl 93 
                      +vGcGtGr++++l   g +v g+Dls+ m+++a+e  ++     +f va+++ lp++d+     v+  ++ h+  + + ++++e++RvL pgG 
       KIR65684.1  62 EVGCGTGRVTAHLRGLGLDVAGLDLSPGMVAVARESWPGL----RFAVASMTALPLPDGGLAGLVAWYSIIHLppAALPAVFAEFHRVLAPGGE 151
                      89************999****************8888775....68************877777777777777699*****************9 PP

                      EE CS
  Methyltransf_11  94 lv 95 
                      l+
       KIR65684.1 152 LL 153
                      86 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   2.9e-17   5.7e-14      19     164 ..      53     198 ..      21     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 2.9e-17
  Methyltransf_23  19 klraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae....kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpd..ppellrqia 106
                      +  a+g v+++GcGtG+++ +lr  g +v+g Dlsp +v+ a+    + ++a+ +++     + p+g     v+++++ h+p+  +p++++ ++
       KIR65684.1  53 RAAASGPVVEVGCGTGRVTAHLRGLGLDVAGLDLSPGMVAVAReswpGLRFAVASMT---ALPLPDGGLAGLVAWYSIIHLPPaaLPAVFAEFH 143
                      3567779*************************************6666666666666...777799****************666********* PP

  Methyltransf_23 107 tllkpgGylllseplaslkedrllldwlylvpagrhisffsarslkelleeaGlevve 164
                      + l+pgG lll   +    ++ +l++ +y  + +  +++   + ++ +l +aG+ v++
       KIR65684.1 144 RVLAPGGELLLAFKAG--DRRIRLEQ-AYGHTVSYDVHWLPPDRIAAQLAAAGFAVHA 198
                      *********9998854..34444444.333434457899999************9985 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0     3e-10   6.1e-07       1      99 []      61     152 ..      61     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 3e-10
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl.kdirevldnirklL 93 
                      +e+GcGtG+++++l+    ++++ g+D+sp +++ a+e     +   ++   l   d +         lv   + +h   + + +v+++++++L
       KIR65684.1  61 VEVGCGTGRVTAHLRGL--GLDVAGLDLSPGMVAVARESWPGLRFAVASMTALPLPD-GG-----LAGLVAWYSIIHLPpAALPAVFAEFHRVL 146
                      69***************..**************999998888886444444444333.33.....3446666666666688899********** PP

  Methyltransf_12  94 kpgGrl 99 
                      +pgG l
       KIR65684.1 147 APGGEL 152
                      ****76 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   5.8e-10   1.2e-06       6     110 ..      59     155 ..      56     179 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 5.8e-10
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl..naladpdkileei 97 
                      +v+++GCGtG+ t  l  +   + +v G+D s+ ++ +Are         ++F ++++++l+  l d     +++   +     a++++++ e 
       KIR65684.1  59 PVVEVGCGTGRVTAHLRGL---GLDVAGLDLSPGMVAVARES-----WPGLRFAVASMTALP--LPDGGLAGLVAWYSIihLPPAALPAVFAEF 142
                      689**************54...578****************6.....55889**********..999666666666666344457899****** PP

  Methyltransf_31  98 ervlkpggillie 110
                      +rvl pgg+ll++
       KIR65684.1 143 HRVLAPGGELLLA 155
                      *********9975 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   5.1e-06      0.01      50     166 ..      59     169 ..      49     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.1e-06
                      EEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-H..HHHHHHHHH CS
  Ubie_methyltran  50 kvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDk..lkaLkeayr 141
                       v++v +Gtg ++++l        +v +lD+++ m+ v++     e+   ++f +a+  +Lp  d+    +   + +  ++    + ++ e +r
       KIR65684.1  59 PVVEVGCGTGRVTAHLRG---LGLDVAGLDLSPGMVAVAR-----ESWPGLRFAVASMTALPLPDGGLAGLVAWYSIIHLPPAalPAVFAEFHR 144
                      5899******99998864...45699*********99876.....567789********************9*****999864227899***** PP

                      HEEEEEEEEEEEE----SHHHHHHH CS
  Ubie_methyltran 142 vlkpGGrlvvlefskvelpllsqay 166
                      vl pGG+l+    +      l+qay
       KIR65684.1 145 VLAPGGELLLAFKAGDRRIRLEQAY 169
                      *******986555555555566666 PP

>> Methyltransf_17  S-adenosyl-L-methionine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00017      0.34      27      48 ..      55      76 ..      35      81 .. 0.90
   2 ?   -3.1   0.0       3.4   6.8e+03     115     132 ..     179     197 ..     174     203 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
                     T--S-EEEE--TTSHHHHHHHH CS
  Methyltransf_17 27 dieGpvlelGLGnGRtydhlre 48
                       +Gpv+e+G G GR   hlr 
       KIR65684.1 55 AASGPVVEVGCGTGRVTAHLRG 76
                     678*****************95 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.4
                      HHH.HHHGGGEEEEEEEEE CS
  Methyltransf_17 115 rls.dliagllapgGlavs 132
                      +l+ d ia+ la  G+av 
       KIR65684.1 179 WLPpDRIAAQLAAAGFAVH 197
                      5541578888888888885 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0001      0.21      31      61 ..      57      87 ..      40     108 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
                S-EEEEES-TTSHHHHHHHHTT-EEEEEES- CS
        TehB 31 pgkvldlgcgqgrnslylsllgydvtawdkn 61
                 g v+++gcg gr + +l  lg dv  +d  
  KIR65684.1 57 SGPVVEVGCGTGRVTAHLRGLGLDVAGLDLS 87
                57799********************999865 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00018      0.35      76     175 ..      59     158 ..      35     173 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
                 EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC...SEEEEES-GGG.TTGGG-SEEEEEES.SBBSS--HHHHHTEEEEEEE CS
        PCMT  76 rvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle...nvivvvgDGrk.GyeekaPYdaihvg.aaapeiPealidQLkeGGrl 169
                  v+evG+G+G  ta l  l      v +++ ++ +v+ a++    l  +     ++   DG   G    a Y  ih+  aa p +  ++ + L++GG l
  KIR65684.1  59 PVVEVGCGTGRVTAHLRGL---GLDVAGLDLSPGMVAVARESWPGLRFAvasMTALPLPDGGLaG--LVAWYSIIHLPpAALPAVFAEFHRVLAPGGEL 152
                 599*******988877654...445679******9999998765555443337777888975414..4799*****9637889**************** PP

                 EEEESB CS
        PCMT 170 vvPvge 175
                 ++  + 
  KIR65684.1 153 LLAFKA 158
                 987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1609.61
//
Query:       KIR65685.1  [L=80]
Description: hypothetical protein TK50_10025 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-19   69.9   0.3    1.6e-19   69.6   0.3    1.1  1  DUF5522   Family of unknown function (DUF5522)
     0.0091   16.5   0.0      0.012   16.1   0.0    1.1  1  ABA_WDS   ABA/WDS induced protein


Domain annotation for each model (and alignments):
>> DUF5522  Family of unknown function (DUF5522)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.3   1.8e-23   1.6e-19       1      44 [.      34      77 ..      34      80 .] 0.97

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 1.8e-23
     DUF5522  1 aheealeegedyyldpetgymVfTelyhlkRgkCCgngCRHCPY 44
                ah++al++g+  y dpetg++V+T+ ++ +Rg CCg gCRHCPY
  KIR65685.1 34 AHAAALAAGQAGYPDPETGLFVLTAGFLARRGTCCGRGCRHCPY 77
                799***************************************** PP

>> ABA_WDS  ABA/WDS induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.3e-06     0.012      29      61 ..      14      46 ..      12      51 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.3e-06
     ABA_WDS 29 yEkheakkdpeharrHkieeeiaaavAvGsgGy 61
                 E h  +  p+h +r +i +  aaa+A G +Gy
  KIR65685.1 14 TEPHPSRLPPDHPHRGRILAAHAAALAAGQAGY 46
                588999999***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 573.28
//
Query:       KIR65686.1  [L=183]
Description: hypothetical protein TK50_10030 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.045   13.8   0.8      0.048   13.7   0.8    1.2  1  DUF3558   Protein of unknown function (DUF3558)


Domain annotation for each model (and alignments):
>> DUF3558  Protein of unknown function (DUF3558)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.8   2.7e-06     0.048       1     102 [.      13     104 ..      13     170 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.7e-06
     DUF3558   1 lllaGCssttdGtapaasssassssttsssaapavpldtsgvlfdpCglltddqlaelggdkekeeaastgangpgCsWqaads..agygvsvsfswye 97 
                 ll++GC+            ++++++ + +++ap   + +++++   C ll  ++++e +g + + +aas   + ++C  +a++   ++ +++v+ ++ +
  KIR65686.1  13 LLVTGCG------------AEAAEPVAVPRGAPVAVDVPAASSGGACRLLDFAVVEEHTGERFDVAAASARDDTRTCVLRAKRAllPELALTVTDTSID 99 
                 689****............33333333344444444666899***************************************988886666666655555 PP

     DUF3558  98 gspir 102
                 +++++
  KIR65686.1 100 VADFT 104
                 33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1291.97
//
Query:       KIR65687.1  [L=227]
Description: dihydrofolate reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-26   90.0   0.1    2.2e-25   88.5   0.0    1.9  2  Fe_dep_repr_C   Iron dependent repressor, metal binding and d
    1.5e-19   69.9   0.1    3.4e-19   68.8   0.0    1.7  2  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
    6.6e-10   39.1   2.8    7.6e-10   38.9   0.5    2.1  2  FeoA            FeoA domain
    1.1e-05   25.2   0.4    4.4e-05   23.3   0.1    2.1  2  MarR_2          MarR family
    6.5e-05   23.1   0.0     0.0001   22.4   0.0    1.3  1  RepB            RepB plasmid partitioning protein
     0.0013   18.2   0.4     0.0048   16.4   0.0    2.1  2  HTH_24          Winged helix-turn-helix DNA-binding
     0.0014   19.1   0.6      0.019   15.5   0.1    2.8  3  HTH_27          Winged helix DNA-binding domain
     0.0015   18.4   0.6      0.006   16.5   0.1    2.2  3  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0019   18.3   0.1     0.0065   16.5   0.1    2.0  1  HemN_C          HemN C-terminal domain
     0.0054   16.8   0.7      0.034   14.2   0.1    2.5  3  HTH_20          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.031   14.2   0.0    1.7  1  MarR            MarR family
      0.032   14.0   0.0      0.063   13.1   0.0    1.4  1  LexA_DNA_bind   LexA DNA binding domain
      0.049   13.6   0.3       0.15   12.0   0.3    1.9  1  HTH_1           Bacterial regulatory helix-turn-helix protein
       0.98   10.1   7.0       0.12   13.0   1.0    2.3  3  ABATE           Putative stress-induced transcription regulat


Domain annotation for each model (and alignments):
>> Fe_dep_repr_C  Iron dependent repressor, metal binding and dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.3   8.1e+03      18      31 ..       9      22 ..       3      24 .. 0.73
   2 !   88.5   0.0   1.7e-28   2.2e-25       1      69 [.      66     134 ..      66     135 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.3
                   HHHHHHHHCT--CC CS
  Fe_dep_repr_C 18 lerfLvdvlgvdwe 31
                    e +L  +l++++e
     KIR65687.1  9 TEMYLRTILELEEE 22
                   57788888888776 PP

  == domain 2  score: 88.5 bits;  conditional E-value: 1.7e-28
                    -HHHHHHHHHHHHHHHHHHHHHHHHCT--CCCHHHHCCCCGGGS-HHHHHHHHHHCT-.SB-TTS-B-- CS
  Fe_dep_repr_C   1 TekGrelAkrlvrrhrllerfLvdvlgvdweeaheeAerlEhalseelierldellgfpeecPhgdpip 69 
                    T+ Gr  A +++r+hrl+e +Lv+v+g++ eeaheeA+r+Eh++s+ +++r+++ll+ p+++P+g+pip
     KIR65687.1  66 TPLGRASAVSVMRKHRLAELLLVNVIGMPYEEAHEEACRWEHVMSDAVEKRVYDLLNRPTRSPYGNPIP 134
                    899*****************************************************************9 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   2.7e-22   3.4e-19       1      60 []       4      63 ..       4      63 .. 0.98
   2 ?   -3.3   0.0       8.3   1.1e+04      21      34 ..      75      88 ..      73      89 .. 0.76

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 2.7e-22
                    X--HHHHHHHHHHHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTEE CS
  Fe_dep_repress  1 dLvestEdYLetIYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyveyekykgl 60
                    dLv++tE+YL+tI++l+ee++++ ++++aerL +s+++Vs+++ ++e+dG++ +e++++l
      KIR65687.1  4 DLVDTTEMYLRTILELEEEGVPPLRARIAERLRQSGPTVSQTVARMERDGLLTVEGDRHL 63
                    79********************************************************97 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8.3
                    SSB-HHHHHHHHTS CS
  Fe_dep_repress 21 kvvktkdlaerLnv 34
                    +v ++ +lae L v
      KIR65687.1 75 SVMRKHRLAELLLV 88
                    57788899998865 PP

>> FeoA  FeoA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       1.1   1.4e+03      38      43 ..      73      78 ..      27      99 .. 0.60
   2 !   38.9   0.5   5.9e-13   7.6e-10       9      73 ..     161     225 ..     153     226 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.1
                EEEEEE CS
        FeoA 38 rievva 43
                 + v +
  KIR65687.1 73 AVSVMR 78
                344444 PP

  == domain 2  score: 38.9 bits;  conditional E-value: 5.9e-13
                 T-EEEEEEE-T...T.SSHHHHHHHHT--TT-EEEEEEE-TTS-SEEEEETTEEEEE-HHHHTTEEEE CS
        FeoA   9 Gergeiarisd...edpellrrLremGlvpGarievvarapfggplvvrvgdtrvaLgreeAqaIlVe 73 
                   +++++ri +   +d+++lr+L++ G+ pGa+++v +++++   +++   + rv L+re+A++++V 
  KIR65687.1 161 TGTVVVRRICEsvqTDADVLRQLHAAGVDPGATVTVAQERDG---VSIDRSGDRVRLPREVASRVFVA 225
                 57899*********99*********************98665...99999999*************96 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   3.4e-08   4.4e-05      23      55 ..      27      59 ..       7      63 .. 0.80
   2 ?   -1.4   0.0       1.8   2.3e+03       6      18 ..     175     187 ..     174     200 .. 0.69

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 3.4e-08
                EHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2 23 tvgelarrlglsksavsrilkrLvaaGLverrp 55
                  + +a+rl+ s ++vs++++r+++ GL++ + 
  KIR65687.1 27 LRARIAERLRQSGPTVSQTVARMERDGLLTVEG 59
                5578*************************8774 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.8
                 HHHHHHHHHHCTT CS
      MarR_2   6 aqarvLaaLgrrp 18 
                 ++a+vL  L++++
  KIR65687.1 175 TDADVLRQLHAAG 187
                 5678888777664 PP

>> RepB  RepB plasmid partitioning protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   8.1e-08    0.0001      12     112 ..      14     111 ..      11     134 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 8.1e-08
        RepB  12 rfaarleerGvd..reeiasalgldkqtvskmvaraipegicaeevaLLkdvetgiaaiglakkigrarwvelaellaaakavesayfrallsdtrfsq 108
                 r++  lee Gv+  r++ia  l  + +tvs+ var+ ++g+    + +  d    ++++g+a++++ +r + laell  ++++   y +a  +++r + 
  KIR65687.1  14 RTILELEEEGVPplRARIAERLRQSGPTVSQTVARMERDGL----LTVEGDRHLALTPLGRASAVSVMRKHRLAELL-LVNVIGMPYEEAHEEACRWEH 107
                 8999*******9889**************************....66679999************************.899999999999999999988 PP

        RepB 109 Lvki 112
                 +++ 
  KIR65687.1 108 VMSD 111
                 8775 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.9   2.5e+03      38      46 ..      16      24 ..      13      24 .. 0.77
   2 !   16.4   0.0   3.7e-06    0.0048      22      47 ..      30      55 ..      28      56 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.9
      HTH_24 38 lkrLeeeGl 46
                + +LeeeG+
  KIR65687.1 16 ILELEEEGV 24
                668999997 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 3.7e-06
      HTH_24 22 eLAerlglSpstvnrrlkrLeeeGlI 47
                 +Aerl  S +tv++ + r+e++Gl+
  KIR65687.1 30 RIAERLRQSGPTVSQTVARMERDGLL 55
                69**********************97 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.5e-05     0.019       9      68 .]      13      69 ..       9      69 .. 0.80
   2 ?    0.0   0.0      0.96   1.2e+03       5      23 ..      84     102 ..      81     121 .. 0.82
   3 ?   -2.0   0.0       4.1   5.3e+03      37      46 ..     178     187 ..     164     188 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-05
      HTH_27  9 Lhlir..hrrrrkkl.adlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68
                L++i   ++++   l a++++rl  +  ++s  + ++++ GL++ +gd      ++++lT+ G
  KIR65687.1 13 LRTILelEEEGVPPLrARIAERLRQSGPTVSQTVARMERDGLLTVEGD------RHLALTPLG 69
                66666555555556669**************************55544......7*****977 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.96
      HTH_27   5 qalvLhlirhrrrrkklad 23 
                 + l++++i+++++++++++
  KIR65687.1  84 ELLLVNVIGMPYEEAHEEA 102
                 567899999***9999864 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4.1
      HTH_27  37 yslkkLtekG 46 
                  +l++L+++G
  KIR65687.1 178 DVLRQLHAAG 187
                 6888888887 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   4.7e-06     0.006       6      55 ..      15      61 ..      12      68 .. 0.81
   2 ?   -2.3   0.0       3.7   4.7e+03       2       8 ..      81      87 ..      80     101 .. 0.81
   3 ?   -3.1   0.0       6.2   7.9e+03      29      41 ..     210     222 ..     203     223 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.7e-06
                HHHHHHCTTTCEEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET.E CS
   HTH_Crp_2  6 fLlrlaeraggeielpltqeelAsmlGltretvsrilseLkreglis.rg.r 55
                ++l+l+e+  g   +p  ++ +A++l  +  tvs++ ++++r+gl++  g r
  KIR65687.1 15 TILELEEE--G---VPPLRARIAERLRQSGPTVSQTVARMERDGLLTvEGdR 61
                66777553..3...788899**************************965533 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.7
                HHHHHHH CS
   HTH_Crp_2  2 RlArfLl 8 
                RlA +Ll
  KIR65687.1 81 RLAELLL 87
                9999998 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 6.2
                 HHTTSSHHHHHHH CS
   HTH_Crp_2  29 smlGltretvsri 41 
                 +++ l re  sr+
  KIR65687.1 210 DRVRLPREVASRV 222
                 5667778888887 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   5.1e-06    0.0065      26      65 ..      31      70 ..      27      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.1e-06
      HemN_C 26 feqrfgldleellaaaleklqeqGLLeldg.grlrltprGr 65
                +++r  ++  +++ +++++++++GLL+ +g ++l ltp Gr
  KIR65687.1 31 IAERLRQS-GPTVSQTVARMERDGLLTVEGdRHLALTPLGR 70
                56666666.7788999*************999********9 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   2.6e-05     0.034      29      60 ..      30      61 ..      15      62 .. 0.90
   2 ?   -2.8   0.0       5.5     7e+03       7      21 ..     109     123 ..     107     127 .. 0.68
   3 ?   -0.8   0.0       1.3   1.7e+03      13      21 ..     177     188 ..     174     208 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.6e-05
                HHHHHHTS-HHHHHHHHHHHHHCTTEEEECTE CS
      HTH_20 29 elaerldlskntlsyHLrvLeeagLvevvreg 60
                 +aerl+ s  t+s+ ++ +e+ gL++v++ +
  KIR65687.1 30 RIAERLRQSGPTVSQTVARMERDGLLTVEGDR 61
                69**************************9865 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.5
                 HS-HHHHHHHHHHST CS
      HTH_20   7 LahPvRrrilraLar 21 
                 +++ v  r++++L+r
  KIR65687.1 109 MSDAVEKRVYDLLNR 123
                 667777888888833 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.3
                 HHHHHHH...ST CS
      HTH_20  13 rrilraL...ar 21 
                 +++lr L     
  KIR65687.1 177 ADVLRQLhaaGV 188
                 689999955533 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.4e-05     0.031      12      48 ..      19      56 ..       9      60 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.4e-05
                HHHSTTEEHH.HHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR 12 lyeqgplsvs.eLakklgvskstvtrvldrLekkGlie 48
                l+e+g + +   +a++l  s +tv+ ++ r+e++Gl++
  KIR65687.1 19 LEEEGVPPLRaRIAERLRQSGPTVSQTVARMERDGLLT 56
                555565666668************************97 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.9e-05     0.063      18      58 ..      18      57 ..      12      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.9e-05
                   HHHHHSS---HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE- CS
  LexA_DNA_bind 18 sieetgypPsireiaralglkSpsaveehLkaLerKGyier 58
                   ++ee+g pP ++ ia++l+ +S  +v +  +++er G++ +
     KIR65687.1 18 ELEEEGVPPLRARIAERLR-QSGPTVSQTVARMERDGLLTV 57
                   5899**************9.56889************9876 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   0.00012      0.15      20      59 ..      32      69 ..      29      70 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
                HHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1 20 AeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                Ae+L+ s p+vs+ ++r+E+     L +   r+l LT+ G
  KIR65687.1 32 AERLRQSGPTVSQTVARMERD--GLLTVEGDRHLALTPLG 69
                9******************95..33344444567777777 PP

>> ABATE  Putative stress-induced transcription regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.4       1.1   1.4e+03      98     111 ..      50      63 ..      13     114 .. 0.55
   2 ?   -2.9   0.0       8.1     1e+04       6      27 ..     119     144 ..     114     147 .. 0.58
   3 ?   13.0   1.0   9.5e-05      0.12      17      68 ..     168     226 ..     160     227 .] 0.88

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.1
                 -TTS-E........ CS
       ABATE  98 hddgpvdrardwhl 111
                 + dg ++++ d+hl
  KIR65687.1  50 ERDGLLTVEGDRHL 63 
                 22222222223333 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8.1
                 HHHHH....----HHHHHHHTTT-HH CS
       ABATE   6 dlvNT....rargggrraDlLttpad 27 
                 dl+N      +  + ++ ++L+tp++
  KIR65687.1 119 DLLNRptrsPYGNPIPGLEELGTPEQ 144
                 55655444433344466778888876 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 9.5e-05
                 HHHHHTTT-HHHHHH--TTHHHHHH..................HHHHHHHHHHHHHHTHH CS
       ABATE  17 rraDlLttpadLaaWleaagllpagtaaagada........elararaLRealrallaaa 68 
                 r  +  +t+ad+++ l+aag+ p +t + ++++        + +r+r  Re+  +++ aa
  KIR65687.1 168 RICESVQTDADVLRQLHAAGVDPGATVTVAQERdgvsidrsG-DRVRLPREVASRVFVAA 226
                 5568899*******************9999999*******76.9************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1540.78
//
Query:       KIR65688.1  [L=282]
Description: 3-mercaptopyruvate sulfurtransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-29  100.5   0.0    6.3e-15   55.6   0.0    2.1  2  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   3.5e-19   6.3e-15       3     106 ..      12     130 ..      10     131 .. 0.86
   2 !   43.2   0.0   2.6e-15   4.6e-11       6     106 ..     163     272 ..     158     273 .. 0.85

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 3.5e-19
   Rhodanese   3 kelkellekgkva.llDvR.......ppeeYekghIpgAvnv.....skdtlsrakkseapllelpeellel.gidnkktvvvycdgggr.aaaaaall 86 
                 + l++ l++ ++  llDvR        ++++++gh+pgAv v        + + a +++ p+ + ++++l+  g++ + +vvvy+ g g  aa+a+++l
  KIR65688.1  12 DRLAAELDSADPPaLLDVRwrlagppGRDDHAAGHLPGAVFVdldaaLCGPPGAAGRHPLPDPAVLQAALRAaGVRAGHPVVVYDGGDGLgAARAWWTL 110
                 56666774444445*****999987666669*************9997778899999****************************9999989999**** PP

   Rhodanese  87 kklGykn.vsvldGGfkawke 106
                 + +G ++ v+vl GGf aw +
  KIR65688.1 111 RWAG-HQpVRVLHGGFPAWVA 130
                 ****.566***********87 PP

  == domain 2  score: 43.2 bits;  conditional E-value: 2.6e-15
   Rhodanese   6 kellekgkvallDvRppeeY.........ekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvs 95 
                 ++l ++g+  llDvR++++Y          +gh+pgAvn+++  + +++ +  ++ +l e++++ g+ +  +v  yc +g  aa+a  +l  +G ++  
  KIR65688.1 163 AALAATGDGTLLDVRAAARYrgehepvdpVAGHVPGAVNLPAGEYVGPDGRFPSSGALRERFAAAGVADAAPVGAYCGSGVTAAQAVLALHLAGRPDAA 261
                 4444666666**********999999999999********7777777777777777888888888*****************9999888888**899** PP

   Rhodanese  96 vldGGfkawke 106
                 ++ G++++w +
  KIR65688.1 262 LYVGSWSNWVA 272
                 *********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2163.21
//
Query:       KIR65689.1  [L=393]
Description: acetoin utilization protein AcuC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-72  244.4   0.0    2.7e-72  243.8   0.0    1.2  1  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.8   0.0   1.5e-76   2.7e-72       4     305 ..      24     315 ..      21     317 .. 0.89

  Alignments for each domain:
  == domain 1  score: 243.8 bits;  conditional E-value: 1.5e-76
                    GTHHHHHHHHHHHHT.THHHHCCE..EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTTTCCHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl   4 npkRlsaileslaesvglldelel.liqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiasklldddtpvspktlkaallavgav 98 
                    +p R++ ++ +la  +g+l +  + l++p++a+++ l++vH+++Yl++++ +  +          +l  +   l + d+pv++++++ + l++ga+
     KIR65689.1  24 DPVRVE-LTVALAGELGVLGRPGVrLVRPEPADDALLTRVHDPRYLDAVRVAPRD----------PLFAGF-GLGTSDNPVFDGMHESSALVAGAT 107
                    556666.555566655655443334899*********************954322..........222222.367889****************** PP

                    HHHHHHHHTTSSSEEEETTSS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT-TTEEEEEEEE-CCTSTTSS- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl  99 leavdavlsgsvkaafvlvrPpgHHakaseasGFClvNnvaiaikylqakhelkrvailDvDvHhGnGteeafysdpdvltlSiHryegifyPgtg 194
                    ++a++av +g++++a+  v ++ HHa++ +a GFC++N+ a+ai +l +  +++r+a++DvDvHhG+G++++f++dp+vlt+S+H+++  ++Pgtg
     KIR65689.1 108 VAAAEAVWRGEARRAV-NVAGGLHHAMPARAAGFCVYNDPAVAIARLLD-LGAQRIAYVDVDVHHGDGVQAVFWDDPRVLTVSLHETPLALFPGTG 201
                    **********866665.447****************************9.99******************************************** PP

                    -TT---SGGGTTSEEEEEE-TT-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHHHHCCCHGS-.G..EEEEE- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxxx RF
  Hist_deacetyl 195 aledlgegkgkgfnlnvpleegtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltkklaeladkv.k.kvvllle 288
                      +++g   ++g+++nvpl++g++d+ +l++f+ ++ +vl++f+P+l++ ++G+D+++ dpl++l+lsv+g   ++  l++lad+  + ++v++++
     KIR65689.1 202 FPDETGGPGAQGTAVNVPLPPGVDDAGWLRAFHAVVPSVLRAFRPQLLVTQCGADGHRLDPLADLHLSVDGQRATYLALRALADELcEgRWVATGG 297
                    ******889999***************************************************************************99******* PP

                    S---H.HHHHHHHHHHHH CS
                    xxxxx.xxxxxxxxxxxx RF
  Hist_deacetyl 289 GGYnl.ealaravtavls 305
                    GGY l e ++ra+t++l+
     KIR65689.1 298 GGYALvEVVPRAWTHLLA 315
                    *****9********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2843.70
//
Query:       KIR65690.1  [L=852]
Description: CoA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-55  187.3   0.1    4.2e-55  186.6   0.1    1.3  1  ATP-grasp_5      ATP-grasp domain
    1.5e-39  134.9   5.4    6.1e-39  133.0   0.0    3.5  3  Succ_CoA_lig     Succinyl-CoA ligase like flavodoxin domain
    1.5e-20   73.9   1.7    1.5e-20   73.9   1.7    3.1  4  CoA_binding_2    CoA binding domain
    4.7e-12   46.2   1.5      1e-11   45.1   0.1    2.2  2  Acetyltransf_1   Acetyltransferase (GNAT) family
    6.5e-08   33.4   0.0    1.7e-07   32.0   0.0    1.8  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    1.9e-07   31.7   1.1    5.4e-06   27.0   1.1    2.7  2  CoA_binding      CoA binding domain
    2.3e-06   27.9   0.0    3.7e-06   27.2   0.0    1.3  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    1.4e-05   25.4   0.3    0.00021   21.7   0.1    2.6  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00011   22.2   0.7    0.00043   20.2   0.0    2.0  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
    0.00021   21.2   0.2      0.003   17.5   0.0    2.7  3  FR47             FR47-like protein
  ------ inclusion threshold ------
      0.028   14.5   1.8      0.042   14.0   0.1    2.1  2  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.6   0.1   2.6e-58   4.2e-55      16     221 ..     641     837 ..     629     838 .. 0.97

  Alignments for each domain:
  == domain 1  score: 186.6 bits;  conditional E-value: 2.6e-58
  ATP-grasp_5  16 kelleaygipvvetrlassaeeaveaaeeigypvvlKivspdilhKtdvgGvrlnlkdaeevraaaeeilervkekspeariegvlVqemakrggrEl 113
                  + ll aygi+vv++  a sa+eav+aa ++g pv+lK + p++ h+ d+g vrl+l da++vr+a++e+ + + +         vlVq m++  g+ +
   KIR65690.1 641 AGLLGAYGIDVVPSVRAGSADEAVAAAGALGCPVALKAAAPGLRHRLDLGAVRLDLADAAAVRRAYAEMSAVFGA--------DVLVQAMVP-PGVPC 729
                  579*********************************************************************977........7******99.9**** PP

  ATP-grasp_5 114 ivgvteDpvFGpvilfGlGGtavevlkdvavalpplnstlareliertkaskllkgvrgekkadlaaleellvrlsqLvvdlpeIreldinPllveee 211
                  +v + eDp FGpv+ fGlGG+a+e+l+d+a + +pl++++a+el+++ +a++ll+g+rg +++d+aal+ell+r+ +L++++p++r+l +nP+l++++
   KIR65690.1 730 VVELVEDPAFGPVVGFGLGGVATELLGDRAWRAVPLTDADAAELVDAPRAAPLLRGHRGAAPVDRAALAELLLRVGRLADEQPRVRSLTLNPVLARPD 827
                  ************************************************************************************************** PP

  ATP-grasp_5 212 gvvalDarir 221
                  g+ +l a + 
   KIR65690.1 828 GISVLHATVG 837
                  *****99885 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   1.5       4.7   7.7e+03      78     104 ..     275     302 ..     268     314 .. 0.66
   2 !  133.0   0.0   3.7e-42   6.1e-39       1     135 [.     342     471 ..     342     474 .. 0.91
   3 ?    2.7   0.1      0.06        98       4     106 ..     485     598 ..     482     613 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.7
  Succ_CoA_lig  78 aark.kpvvvlksGrseagaraaashtg 104
                   aa+    +vv+ +G  eaga  aa++ +
    KIR65690.1 275 AAAGaHGLVVISAGFAEAGAGGAAAQRA 302
                   4444477889999988888877776643 PP

  == domain 2  score: 133.0 bits;  conditional E-value: 3.7e-42
  Succ_CoA_lig   1 pGkialisqSGalalalldwaasrglgfskvvslGneadvdvadlleylaedpetkvillylEsirdgrkflsaarraarkkpvvvlksGrseagar 97 
                   pG+++++sqSGa+++all+ aa+rglg+s++vs+Gn+adv+ +dll+y+++dp t+vi+lylE+++++rkf+++arr+ r+kpvv+l s   + g  
    KIR65690.1 342 PGRVGIFSQSGAFGVALLAEAARRGLGLSSFVSAGNRADVSGNDLLQYWQDDPGTDVIMLYLETFGNPRKFARLARRIGRDKPVVALASPARPPGLG 438
                   79**************************************************************************************996655543 PP

  Succ_CoA_lig  98 aaashtgalagsdavvdaafrqaGvlrvdsleelfdaa 135
                          a   +  +v a+f+q+Gv+rvd++ el+d+ 
    KIR65690.1 439 G-----DAPGPDAVAVGALFAQSGVIRVDTVAELLDVG 471
                   3.....34455666789******************986 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.06
  Succ_CoA_lig   4 ialisqSGalalalldwaasrglgfs..kvvslGnead.vdvadlleylaedpetkvillylE.....sird.grkflsaarraark.kpvvv.lks 89 
                   +a++  S al    ++++a++gl ++  +   +G +a   ++a  l + a+d+ ++++++++      ++ d  + f++a+  ++ + kpvv+ + +
    KIR65690.1 485 VAVVGNSSALTGLAATACAAQGLTVAagYPSDVGPRAGaAEFAAALGAAAADDGVDALVAVFApplpgQLTDtEADFAAALPGVSDAgKPVVAtFLA 581
                   7777777777777777777776554411445677766414677777777777777777666532222245554688999999999999999983468 PP

  Succ_CoA_lig  90 Grseagaraaashtgal 106
                   Gr +ag  a  s  +a+
    KIR65690.1 582 GRVPAGVPAYPSVEEAV 598
                   99999988887766555 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       7.7   1.3e+04      15      41 ..     150     177 ..     148     186 .. 0.72
   2 !   73.9   1.7   8.9e-24   1.5e-20       3     115 ..     200     324 ..     198     325 .. 0.95
   3 ?   -1.4   0.1         2   3.2e+03       1      11 [.     483     493 ..     483     549 .. 0.57
   4 ?   -3.6   0.0       9.3   1.5e+04      41      52 ..     586     597 ..     571     617 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 7.7
                    HHHHHHHHHHH.HT--EEEESSS-SEET CS
  CoA_binding_2  15 fgykvlrylle.hglpvvpVnpkeeeil 41 
                    fgy+v r++ +   +  +p+ p+e ++ 
     KIR65690.1 150 FGYQVQRQYADgVVHLSFPIAPTEATLA 177
                    8999999999863345678888887765 PP

  == domain 2  score: 73.9 bits;  conditional E-value: 8.9e-24
                    EEEET--S-TTSHHHHHHHHHHH...HT--EEEESSS-SEETTEES----T....T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT....... CS
  CoA_binding_2   3 iaVvGasdnpgkfgykvlrylle...hglpvvpVnpkeeeilgekvyaslaedpepvdlvdvftppeatpeivkealalgakavwlqpg....... 88 
                    +aV Gas++ +  g  +l  l++    g pvvpV+p + ++ g ++y+s  ++ +p+dl++v++ pea+ ++v +a+a+ga ++++ ++       
     KIR65690.1 200 VAVYGASATGQGVGAALLGHLRDggyPG-PVVPVHPGAATVAGLPAYPSAVDAGHPIDLAVVAVAPEAVGAVVADAAAAGAHGLVVISAgfaeaga 294
                    8**********************55555.8*********************879**************************9999999999****** PP

                    ...---HHHHHHHHHTT-EEE.ES-HHHHH CS
  CoA_binding_2  89 ...sedeeaaelaeeagirvvgdrCilveg 115
                       + +++++++a++ag+rvvg++C++v++
     KIR65690.1 295 ggaAAQRALVRAAHAAGMRVVGPNCLGVAN 324
                    ***************************986 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2
                    --EEEET--S- CS
  CoA_binding_2   1 rtiaVvGasdn 11 
                    r++aVvG s+ 
     KIR65690.1 483 RRVAVVGNSSA 493
                    57888886643 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 9.3
                    TTEES----T.. CS
  CoA_binding_2  41 lgekvyaslaed 52 
                     g+++y+s++e+
     KIR65690.1 586 AGVPAYPSVEEA 597
                    578888888853 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.1   6.3e-15     1e-11      11     117 .]      46     152 ..      39     152 .. 0.87
   2 ?   -1.3   0.1       1.5   2.5e+03      72      85 ..     207     220 ..     199     222 .. 0.84

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 6.3e-15
                     HTHHHHHHHHHHHHHHH.HHSTTC.EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEET CS
  Acetyltransf_1  11 sffppnedaseeefees.fsleae.gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlavee 103
                      +f p+++ +e++   + + ++ + + +v++  g++++  ++    +   ++a++  ++V  +++g+G+Gs Lle+l++ ar+ gi + v++v +
      KIR65690.1  46 RYFSPYPRIPERDLNRFvHVDHRDrEAFVVLAAGRIVAVGRYERLGP-QAPEAEV-AFVVEDAHQGRGIGSVLLEHLADAARRAGIVRFVAEVLP 138
                     4678888889999555535556667999**************99999.7889999.99****************************88899**** PP

                     TEHHHHHHHHHTTE CS
  Acetyltransf_1 104 dndaairlYeklGF 117
                      n a+ r++  +G+
      KIR65690.1 139 ANGAMLRVFADFGY 152
                     *********77998 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
                     GTTSSHHHHHHHHH CS
  Acetyltransf_1  72 yrgkGlGsaLleal 85 
                     + g+G+G aLl +l
      KIR65690.1 207 ATGQGVGAALLGHL 220
                     679*******9887 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0     1e-10   1.7e-07       3     137 ..      19     152 ..      17     153 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1e-10
  Acetyltransf_3   3 lLrplteeDlealfelrsdpe.vmry....lpepltleeaeewlerawaeeseeegygwaivlkdtgviGsvglrdleeedeeaelgymlapsfw 92 
                      Lrp++++D+ +++++ ++    +ry     p p+ +e    ++ +     ++++   +++ l +++++ + ++ +l ++  eae+ +++ ++++
      KIR65690.1  19 GLRPIRPDDASGIVAMHARFSeRTRYlryfSPYPRIPERDLNRFVH----VDHRDREAFVV-LAAGRIVAVGRYERLGPQAPEAEVAFVVEDAHQ 108
                     59*******9999776443332555543244335544444444442....23334456999.666657888899999999888************ PP

  Acetyltransf_3  93 gkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     g+G+++  ++ l ++a ++ g+ r+va++ + N a+ rv+   G+
      KIR65690.1 109 GRGIGSVLLEHLADAA-RRAGIVRFVAEVLPANGAMLRVFADFGY 152
                     ****************.8888*******************98886 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   1.1   3.3e-09   5.4e-06       5      96 .]     199     288 ..     196     288 .. 0.93
   2 ?    1.5   0.0      0.31     5e+02      41      61 ..     581     601 ..     554     608 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 3.3e-09
                  EEEEETTTSHHHHHH.HHHHHHHHECEE.EEEEC-TTTTTCEETTEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-SEEEEESST CS
  CoA_binding   5 kviviGagglgiagl.yhfkeklkygik.avfgvnprkvgtevlglpvyksvdeleektevdvavitvPaesaqeavdelveagikgiviiteg 96 
                   v+v+Ga+ +g+ ++     + ++ g +  v++v p+  + +v glp+y+s  ++     +d av++v +e++ ++v ++++ag  g v+i++g
   KIR65690.1 199 GVAVYGASATGQGVGaALLGHLRDGGYPgPVVPVHPG--AATVAGLPAYPSAVDAGHP--IDLAVVAVAPEAVGAVVADAAAAGAHGLVVISAG 288
                  599*******99998888889999999989*******..**********999999988..*******************************976 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.31
                  TTCEETTEEEESCHHHHHHHC CS
  CoA_binding  41 vgtevlglpvyksvdeleekt 61 
                  +g+   g+p+y+sv+e++  +
   KIR65690.1 581 AGRVPAGVPAYPSVEEAVRAL 601
                  455666**********98775 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   2.3e-09   3.7e-06      37     139 ..      59     157 ..      20     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 2.3e-09
  Acetyltransf_4  37 fekflealdsekeyvflvaesdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhka 131
                     +++f +  d   +  f v+ ++riv+  +++ + +  +  +ae+ + +   + + +g+g+ l+++l + +++ +i +++ae+  +n +   +++ 
      KIR65690.1  59 LNRFVHV-DHRDREAFVVLAAGRIVAVGRYERLGP--QAPEAEVAFVVE-DAHQGRGIGSVLLEHLADAARRAGIVRFVAEVLPANGAMLRVFAD 149
                     3455544.5778899********************..***********6.79******************************************* PP

  Acetyltransf_4 132 lGFelvgi 139
                     +G+++ ++
      KIR65690.1 150 FGYQVQRQ 157
                     ****9875 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   1.3e-07   0.00021       4      54 ..      71     130 ..      66     154 .. 0.61
   2 ?    0.6   0.0      0.47   7.7e+02      36      48 ..     207     219 ..     194     240 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.3e-07
                     EEEEEEETTEEEEEEEEEEES....TCTEE..EEE-GGGTTSSHHHHHHHH...TT..SEEE CS
  Acetyltransf_7   4 evfVaeddgkivGfialslld....aeitr..laVdpeyrgkGiGraLlea...ae..kgii 54 
                     e fV+   g+iv   ++++l+    +   +  ++V  +++g+GiG+ Lle+   a+   gi 
      KIR65690.1  71 EAFVVLAAGRIVAVGRYERLGpqapEA--EvaFVVEDAHQGRGIGSVLLEHladAArrAGIV 130
                     456776778888766766666885444..34599****************855511445643 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.47
                     GTTSSHHHHHHHH CS
  Acetyltransf_7  36 yrgkGiGraLlea 48 
                     + g+G+G aLl +
      KIR65690.1 207 ATGQGVGAALLGH 219
                     569*******976 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.6e-07   0.00043      31     118 ..      70     162 ..      51     167 .. 0.76
   2 ?   -0.7   0.1      0.77   1.3e+03      63      77 ..     207     221 ..     204     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.6e-07
  Acetyltransf_10  31 alllvaeeggkivGvielrdgs.....hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkavgeeqeenG 117
                         +v+   g+iv v+++++ +         ++V+++++g+Gig+ Lle++ ++a+++gi     +v  ++ +  +++  +G+++    q+++G
       KIR65690.1  70 REAFVVLAAGRIVAVGRYERLGpqapeAEVAFVVEDAHQGRGIGSVLLEHLADAARRAGIVRfVAEVLPANgAMLRVFADFGYQVQ--RQYADG 161
                      44566666788998887744444677433446788899**********************999888888887999********975..456666 PP

  Acetyltransf_10 118 i 118
                      +
       KIR65690.1 162 V 162
                      5 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.77
  Acetyltransf_10  63 yrgqGigkaLleave 77 
                      + gqG+g+aLl +++
       KIR65690.1 207 ATGQGVGAALLGHLR 221
                      679********9875 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.7   2.7e+03      50      79 ..      65      94 ..      63     100 .. 0.84
   2 !   17.5   0.0   1.8e-06     0.003      27      82 ..     101     157 ..      99     159 .. 0.89
   3 ?   -0.9   0.0         1   1.7e+03      25      40 ..     354     369 ..     348     380 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.7
                HHHS-S-EEEEEETT-HHHHHHHHHHT-EE CS
        FR47 50 iaergktvllvvvasNtpsirlyeklGfek 79
                + +r+ ++++v +a+   +   ye+lG ++
  KIR65690.1 65 VDHRDREAFVVLAAGRIVAVGRYERLGPQA 94
                567889999999999999********9765 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 1.8e-06
                 EEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEE.EETT-HHHHHHHHHHT-EEEEE CS
        FR47  27 lqvlpehrrrGlgsrlvkalakeiaergktvllv.vvasNtpsirlyeklGfekiee 82 
                   v++ h++rG gs+l + la + +++g+  ++  v ++N +  r++   G+++ ++
  KIR65690.1 101 FVVEDAHQGRGIGSVLLEHLADAARRAGIVRFVAeVLPANGAMLRVFADFGYQVQRQ 157
                 67999***********************98876538899**************9866 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1
                 EEEEE-GGG-SSSHHH CS
        FR47  25 galqvlpehrrrGlgs 40 
                 +++ +l e+ rrGlg 
  KIR65690.1 354 FGVALLAEAARRGLGL 369
                 56888999999**996 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   2.6e-05     0.042      31      57 ..     102     128 ..      73     133 .. 0.86
   2 ?   -2.7   0.2         4   6.5e+03      36      47 ..     207     218 ..     205     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.6e-05
  Acetyltransf_CG  31 eVpeelrGkGiAkkLvkaalddareeg 57 
                      +V+++++G+Gi++ L ++  d ar++g
       KIR65690.1 102 VVEDAHQGRGIGSVLLEHLADAARRAG 128
                      799*********************988 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4
  Acetyltransf_CG  36 lrGkGiAkkLvk 47 
                        G+G++++L  
       KIR65690.1 207 ATGQGVGAALLG 218
                      57******9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 5916.78
//
Query:       KIR65691.1  [L=338]
Description: RNA polymerase sigma factor SigB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-23   81.4   0.4    7.2e-23   80.1   0.3    1.8  2  Sigma70_r2    Sigma-70 region 2
    1.2e-19   70.2   0.3    1.4e-17   63.5   0.1    2.5  2  Sigma70_r3    Sigma-70 region 3
    6.4e-18   64.0   8.4    2.5e-17   62.1   2.8    2.9  3  Sigma70_r4    Sigma-70, region 4
    7.9e-15   54.6   0.4    2.1e-14   53.2   0.0    2.0  2  Sigma70_r1_2  Sigma-70 factor, region 1.2
  ------ inclusion threshold ------
      0.037   13.8   0.0        8.2    6.3   0.0    2.9  3  HTH_10        HTH DNA binding domain
      0.065   13.4   0.3        0.8    9.9   0.0    2.7  2  HTH_28        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.3   2.4e-26   7.2e-23       1      70 [.     104     173 ..     104     174 .. 0.97
   2 ?   -3.0   0.0       2.1   6.3e+03      43      53 ..     327     337 ..     320     338 .] 0.78

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 2.4e-26
                 HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2   1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70 
                 l+e++l+lv+++a+r++g+g  + Dl+Qe++l+l+rave+fd ++g++fs+++++++r+a+ +++ +++r
  KIR65691.1 104 LLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQAR 173
                 789**************************************************************99988 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.1
                 TTTCHHHHHHH CS
  Sigma70_r2  43 pergvsfsawl 53 
                 per+++++a++
  KIR65691.1 327 PERAQRLEAYA 337
                 78999999997 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.1   4.7e-21   1.4e-17       1      69 [.     183     251 ..     183     257 .. 0.96
   2 ?    4.2   0.0     0.016        47      18      40 ..     294     316 ..     292     321 .. 0.88

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 4.7e-21
                 XHHHHHHHHHHHHHHHHSSXXXHHHHHHHHTXXHHHHHHHHHHHXXXEETTXBSSSSTTXBSTTTXBXS CS
  Sigma70_r3   1 EklnkikraqreLeqelgrePtpeEiAeeLglseekVrevleaarepvSldlpvgeeedtelgdlledd 69 
                 E+ n+  ra+reL  +lgrePt++E+A +++++e +V e++   repvSld+ vge+++++lgd+++  
  KIR65691.1 183 EQVNRMVRARRELAVTLGREPTVAEVARAMDVPEFQVIELISYDREPVSLDQAVGEDGESALGDFVAAV 251
                 789**************************************************************9975 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.016
                 SSXXXHHHHHHHHTXXHHHHHHH CS
  Sigma70_r3  18 grePtpeEiAeeLglseekVrev 40 
                 gr+ t +E+ +e gls e++r++
  KIR65691.1 294 GRQRTLDEVGKEFGLSRERIRQI 316
                 778899***************98 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.7   5.1e+03      37      45 ..     160     168 ..     159     169 .. 0.86
   2 ?    4.2   0.0     0.011        32      18      34 ..     200     216 ..     187     224 .. 0.78
   3 !   62.1   2.8   8.3e-21   2.5e-17       1      50 []     273     326 ..     273     326 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.7
                 HHHHHHHHH CS
  Sigma70_r4  37 VrqiekrAl 45 
                 +rq ++rA+
  KIR65691.1 160 IRQAITRAM 168
                 899999998 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.011
                 TTT--HHHHHHHHTS-H CS
  Sigma70_r4  18 geglTleEIgerlgiSr 34 
                 g++ T +E+++ +++++
  KIR65691.1 200 GREPTVAEVARAMDVPE 216
                 8888***********97 PP

  == domain 3  score: 62.1 bits;  conditional E-value: 8.3e-21
                 HHHHS-HHHHHHHHHHH....TTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrf....geglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 +La+L++re+ v++lrf    g+ +Tl E+g+++g+Srer+rqiek +l kLR+
  KIR65691.1 273 VLATLSQREQAVIRLRFglddGRQRTLDEVGKEFGLSRERIRQIEKVTLLKLRA 326
                 59**************************************************95 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   6.9e-18   2.1e-14       1      34 []      39      72 ..      39      72 .. 0.97
   2 ?   -2.5   0.1       1.9   5.6e+03       8      16 ..     314     322 ..     313     323 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 6.9e-18
                  HHHHHHHHHHHHSX--THHHHHHHHHHHHCCHHH CS
  Sigma70_r1_2  1 DpvrlYLrEIGriPLLtaeEEveLAkrieaGdea 34
                  D vr+YL+ IGr++LLtae+Ev LAkrieaG++a
    KIR65691.1 39 DLVRAYLNGIGRTKLLTAEQEVVLAKRIEAGLFA 72
                  89*****************************985 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.9
                   HHHHHSX-- CS
  Sigma70_r1_2   8 rEIGriPLL 16 
                   r+I ++ LL
    KIR65691.1 314 RQIEKVTLL 322
                   899999999 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.014        40       1      33 [.      54      86 ..      54      87 .. 0.90
   2 ?   -3.5   0.0       3.1   9.3e+03      23      35 ..     202     214 ..     201     216 .. 0.77
   3 ?    6.3   0.0    0.0027       8.2      19      40 ..     292     313 ..     278     318 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.014
      HTH_10  1 LTdkqlevlklAyemGYFdyPRrvtlkeLAkel 33
                LT  q  vl++ +e+G F + + +t   ++ el
  KIR65691.1 54 LTAEQEVVLAKRIEAGLFAEEKLATCTPVSTEL 86
                8*******************9999988777765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.1
      HTH_10  23 rvtlkeLAkelGI 35 
                 + t++e+A ++++
  KIR65691.1 202 EPTVAEVARAMDV 214
                 5678999999887 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0027
      HTH_10  19 dyPRrvtlkeLAkelGIskstl 40 
                 d  R+ tl+e+ ke+G+s+  +
  KIR65691.1 292 DDGRQRTLDEVGKEFGLSRERI 313
                 6779**************9765 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.31   9.1e+02      13      28 ..     201     218 ..     187     219 .. 0.79
   2 ?    9.9   0.0   0.00027       0.8      11      32 ..     293     316 ..     271     318 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.31
      HTH_28  13 h..svreaArelgisrrt 28 
                 +  +v+e+Ar++ + + +
  KIR65691.1 201 RepTVAEVARAMDVPEFQ 218
                 44699*****99986655 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00027
      HTH_28  11 aGh..svreaArelgisrrtvyrW 32 
                 +G+  + +e+ +e+g+sr+++++ 
  KIR65691.1 293 DGRqrTLDEVGKEFGLSRERIRQI 316
                 55555****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.51
# Mc/sec: 2010.46
//
Query:       KIR65692.1  [L=140]
Description: D-tyrosyl-tRNA(Tyr) deacylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.1e-49  165.9   0.1      9e-49  165.7   0.1    1.0  1  Tyr_Deacylase  D-Tyr-tRNA(Tyr) deacylase


Domain annotation for each model (and alignments):
>> Tyr_Deacylase  D-Tyr-tRNA(Tyr) deacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.7   0.1     5e-53     9e-49       1     144 []       2     139 ..       2     139 .. 0.98

  Alignments for each domain:
  == domain 1  score: 165.7 bits;  conditional E-value: 5e-53
                    EEEEEEEEEEEEEETTEEEEEESSEEEEEEE-BTT--HHHHHHHHHHHHH-EEEEETTSSEEEETTTTT-EEEEEE-GGGGSBTSSSSS-BGTTB- CS
  Tyr_Deacylase   1 raviqrvksAsvtvegevvgsigkGllvlvgvekedteedleklakkilnlrifedeegkmnlsvkdvggevLvVsqftLyadtrkGrrpsfhkaa 96 
                    rav+q v +Asvtv+gevvg+++ Gllvl+gv+++dt e++ ++a+ki++lri++d     ++s++d+g+ +LvVsqftLy+d+rkGrrps+++aa
     KIR65692.1   2 RAVVQTVGRASVTVDGEVVGAVTDGLLVLLGVTHTDTGETACTMARKIHELRILDD-----ERSAADTGAGILVVSQFTLYGDARKGRRPSWTAAA 92 
                    9*******************************************************.....69********************************* PP

                    -HHHHHHHHHHHHHHHHHCTCTTEEE--TTS-EEEEEEEEEEEEEEEE CS
  Tyr_Deacylase  97 kpeeaeelyekfveklrerlgekvetGeFgadmkvslvndGPvtilld 144
                    + e+ae+l+e++v++lrer g++v+tG+F ++m v++vn GP t+lld
     KIR65692.1  93 PAEVAEPLVEAVVAALRER-GAPVQTGRFRTHMLVESVNVGPRTLLLD 139
                    *****************99.66************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 983.72
//
Query:       KIR65693.1  [L=194]
Description: Fe-S cluster assembly protein HesB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-11   43.3   0.0    6.3e-11   42.7   0.0    1.3  1  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   3.5e-15   6.3e-11       2     103 ..      28     192 ..      27     194 .] 0.95

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 3.5e-15
                 HHHHHTTS-HHHHHHHHHHHHHHHS.HCSHHHHHHSHHHHHHHHHTT....STTHHHHHHHHHHHHHHHH............................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxx............................. RF
     HhH-GPD   2 sailsqqtsderanriierlferfg.fptpedladadeekLrelire....lGfyrrKakyikelArilv............................. 66 
                 ++ l+qq+++e a++++  l +r g  p++  la++d++ L++   e    ++f++ +a + +e++r lv                             
  KIR65693.1  28 GMTLDQQIPMEKAFSSPYVLTQRLGhEPDARGLAGYDPDALVAVFAEppalHRFPKAMAARTQEVCRVLVdrydgdaarlwadvadgrellrritelpg 126
                 6789******************************************9**************************************************** PP

                 ...............................S-SS.S--TTSHHHHHHHHHHTTSSSSTTHHHHHHHHH CS
                 ...............................xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 ...............................gkpd.vlivvDvhvrrilkrlrsikekktkkkvekkle 103
                                                g  d + +v+Dv ++ +l+r+r  k++   +k+e+k++
  KIR65693.1 127 fgrqkaqilvallgkrygvtpagwreaaggyGDADaYRSVADVADADSLRRVREYKQR---MKAEAKAA 192
                 *******************************5556699*****************987...77777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.58
# Mc/sec: 1001.51
//
Query:       KIR65694.1  [L=401]
Description: low temperature requirement protein A [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-90  302.9  43.0    3.7e-90  302.7  43.0    1.0  1  LtrA      Bacterial low temperature requirement A protein (Lt
  ------ inclusion threshold ------
      0.029   14.6   3.6       0.84    9.9   0.7    2.7  2  DUF2644   Protein of unknown function (DUF2644)
       0.18   12.0   2.9         13    6.1   1.0    2.6  2  DUF1430   Protein of unknown function (DUF1430)
       0.38   10.2   0.0       0.38   10.2   0.0    1.9  2  DUF1129   Protein of unknown function (DUF1129)
       0.75   10.3  12.9        1.1    9.8   1.7    3.0  2  DUF1211   Protein of unknown function (DUF1211)
        9.6    6.2  12.7        5.9    6.8   0.8    3.7  3  Ycf9      YCF9


Domain annotation for each model (and alignments):
>> LtrA  Bacterial low temperature requirement A protein (LtrA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.7  43.0   1.3e-93   3.7e-90       1     353 []      19     383 ..      19     383 .. 0.95

  Alignments for each domain:
  == domain 1  score: 302.7 bits;  conditional E-value: 1.3e-93
        LtrA   1 rvswlELFFDLvfVvavtqlthalahdltge......gllrflllffavwwaWvgftwlanrfdtddvvvrllllvqmaavlvlalsipeafeerglvf 93 
                 r+s+lELFFDLvfV+a+t++++++ +d++ +      +++++lllf+a+w +W  ++w+++r++++++ ++ +++++m++ +v+a+++p+af+er l+f
  KIR65694.1  19 RASFLELFFDLVFVFALTRVSQRIIDDVASPgrdvwsEVAQTLLLFLALWLVWTLTAWVTSRYEPERGIIQFVVVATMFGSMVMAVALPRAFAERALTF 117
                 79***************************99999999************************************************************** PP

        LtrA  94 alayvvmrlvlvlqylraaradpklsarrlarvyaagllisavlwlagallpgs.arlvlwlvalliel......llvPllarkr.t.tpvhaeHlaER 183
                 a+ay+++++++ l++ +a+r++p   +r+++ + +a+l+++av wlagal+p++ +r v+w+va++ ++      + vP+l+ +r   + v +eHlaER
  KIR65694.1 118 ACAYLAVQIGRPLLITVALRRHP---RRTVTVRILAWLTLGAVPWLAGALVPQQaLRAVFWTVAVAWDYtglalgWPVPRLGPTRvSgWAVMGEHLAER 213
                 ***********************...47777777******************999******************************736*********** PP

        LtrA 184 ygLfvIIaLGEsvvalgaglseqelsvevllaavlglvlaaalwwlYFdv.daaaaehaltsar.rarlarsaygylhllivagiillavglelllahp 280
                 y+++++IaLGE+++ +g ++s +e+s++ + a++l+++++a++w +YF++ ++  ae+  + ar ++ l     +++hl+ivag+ l+avg+el+++hp
  KIR65694.1 214 YQQIFLIALGETILIIGFTFSMSEFSAARFGAFALSFLVTALFWRIYFHRaGHLLAEA-IRVARsPGLLG-ESASWTHLVIVAGVLLTAVGYELVIDHP 310
                 **************************************************66666665.55556266555.666************************* PP

        LtrA 281 eelldlaaalllfggvalfllgllllkrvllgsvslsrlvllllllallalalvlaallalallalvllllaa 353
                  ++ + ++a++++gg+ lfl++++ +++ ++g+vs+srl+++l+l+al++lal +++++ala++a+vl+++a+
  KIR65694.1 311 FARMESTWAVFVMGGPTLFLAARARFEYEIFGRVSRSRLAGVLVLAALAPLALRMSPMVALASAAAVLAAIAV 383
                 *********************************************************************9985 PP

>> DUF2644  Protein of unknown function (DUF2644)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.7   0.00028      0.84      14      45 ..      86     117 ..      85     127 .. 0.85
   2 ?    4.3   0.1     0.015        46      22      55 ..     291     327 ..     286     328 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00028
     DUF2644  14 afiQFfgalllagiLvyavyldrpyveelfmt 45 
                 + iQF+ +  ++g +v av l r+++e  ++ 
  KIR65694.1  86 GIIQFVVVATMFGSMVMAVALPRAFAERALTF 117
                 68************************987654 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.015
     DUF2644  22 lllagiLvyav....yldrpyveelfmtfaifcvGava 55 
                 +++ag+L+ av    ++d+p++  + +t+a+f++G+++
  KIR65694.1 291 VIVAGVLLTAVgyelVIDHPFA-RMESTWAVFVMGGPT 327
                 677888875543222789***8.59999*****99986 PP

>> DUF1430  Protein of unknown function (DUF1430)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.011        33      35      84 ..      52     104 ..      49     114 .. 0.73
   2 ?    6.1   1.0    0.0043        13      31      80 ..     205     256 ..     204     264 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.011
     DUF1430  35 slfkrhkeyliiqlivllillvlifiltk...ekiillvvlvlllielllill 84 
                 ++++   + l++ l+++l+ ++++ + ++   e  i+ +v+v+ ++ ++++ +
  KIR65694.1  52 DVWSEVAQTLLLFLALWLVWTLTAWVTSRyepERGIIQFVVVATMFGSMVMAV 104
                 56666677777777777777777777776666888999999888888877665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0043
     DUF1430  31 ihGyslfkrhkeyliiqlivllillvlifiltk..ekiillvvlvllliell 80 
                 + G  l +r+++ ++i l+  +++++++f +++        ++l+ l++ l+
  KIR65694.1 205 VMGEHLAERYQQIFLIALGETILIIGFTFSMSEfsAARFGAFALSFLVTALF 256
                 67999*************************9994333334455555555554 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00013      0.38      82     130 ..      57     104 ..      35     113 .. 0.81
   2 ?   -3.6   0.5       2.1   6.3e+03     142     166 ..     141     165 ..     130     181 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00013
     DUF1129  82 lDnsLlllalfallfgilalfskkkqtasiGlitlllvalvgGlamvlv 130
                 + ++Lll+  + l+  ++a++++  + +  G+i  ++va ++G + + v
  KIR65694.1  57 VAQTLLLFLALWLVWTLTAWVTSRYEPER-GIIQFVVVATMFGSMVMAV 104
                 446677777788999********999998.*************876654 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.1
     DUF1129 142 krpplwkrllilllllvvwlvlftl 166
                 +r+ ++++l+ l+l  v wl+  ++
  KIR65694.1 141 RRTVTVRILAWLTLGAVPWLAGALV 165
                 6777778888888888888876655 PP

>> DUF1211  Protein of unknown function (DUF1211)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   3.9     0.014        43       3      82 ..      24     100 ..      23     123 .. 0.79
   2 ?    9.8   1.7   0.00036       1.1      15      57 ..     225     261 ..     217     274 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHHS---HHHHHHHHH.HTHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH CS
     DUF1211   3 eafsDavfAIaiTLlvleikvpeeellaall.ellpsllayllsFlvvasfWlnhhrlfrrikkvderllwlnlllllliv 82 
                 e f D vf +a+T +   i     + +a+   + +++++  ll Fl ++ +W+    + +r++   + ++++ ++ ++  +
  KIR65694.1  24 ELFFDLVFVFALTRVSQRI--I--DDVASPGrDVWSEVAQTLLLFLALWLVWTLTAWVTSRYEPERGIIQFVVVATMFGSM 100
                 6677777777777655544..2..1233334378999999*********************99999998888888887655 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00036
                 HHHHHHS---HHHHHHHHH.HTHHHHHHHHHHHHHHHHHHHHHH CS
     DUF1211  15 TLlvleikvpeeellaall.ellpsllayllsFlvvasfWlnhh 57 
                 T+l++ ++         +    + ++ a++lsFlv a fW+   
  KIR65694.1 225 TILIIGFTFS-------MSeFSAARFGAFALSFLVTALFWRIYF 261
                 6666655433.......2212356799*************9754 PP

>> Ycf9  YCF9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.1       0.9   2.7e+03      30      52 ..      54      76 ..      47      79 .. 0.73
   2 ?    6.8   0.8     0.002       5.9       1      25 [.      87     111 ..      87     114 .. 0.94
   3 ?    6.0   0.2    0.0037        11      40      54 ..     283     297 ..     275     301 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.9
                HHHHHHHHHHHHHHHHHHHHHHH CS
        Ycf9 30 wsqsknlifsgsalWvaLVllvg 52
                ws+  + +++  alW++  l  +
  KIR65694.1 54 WSEVAQTLLLFLALWLVWTLTAW 76
                88888888888888987666655 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.002
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
        Ycf9   1 lfqlalaaLvllSfvlVvgVPVaya 25 
                 ++q++++a  + S+v+ v+ P a+a
  KIR65694.1  87 IIQFVVVATMFGSMVMAVALPRAFA 111
                 69*******************9998 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0037
                 HHHHHHHHHHHHHHH CS
        Ycf9  40 gsalWvaLVllvgil 54 
                  sa W++LV++ g+l
  KIR65694.1 283 ESASWTHLVIVAGVL 297
                 5788*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.37s 00:00:01.10 Elapsed: 00:00:00.59
# Mc/sec: 2038.76
//
Query:       KIR65695.1  [L=118]
Description: hypothetical protein TK50_10095 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-25   89.1   0.6    2.1e-25   88.6   0.6    1.2  1  DUF3099        Protein of unknown function (DUF3099)
  ------ inclusion threshold ------
      0.023   13.9   0.3      0.028   13.6   0.3    1.0  1  LtrA           Bacterial low temperature requirement A protei
      0.086   12.7   0.1      0.094   12.5   0.1    1.1  1  FA_desaturase  Fatty acid desaturase
       0.09   12.8   0.0       0.13   12.3   0.0    1.3  1  Adipogenin     Adipogenin


Domain annotation for each model (and alignments):
>> DUF3099  Protein of unknown function (DUF3099)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.6   4.8e-29   2.1e-25       1      71 [.      10      83 ..      10      84 .. 0.93

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 4.8e-29
     DUF3099  1 lITdAarslsedlrrRqrrYlilmgiRvvclilavvlvsv.eng...wlalvllvlavvLPwvAVvlANdrperk 71
                lITdAars++++l++RqrrY+++mg+Rv+c+i+ ++lv + +++   wl l+ l++ v++Pw+AV+lANdrp+++
  KIR65695.1 10 LITDAARSQDDQLTSRQRRYVVMMGVRVACVIVGAILVGAqAPMlwlWLPLCGLGM-VLIPWLAVLLANDRPPKE 83
                7*************************************997655766799999999.****************97 PP

>> LtrA  Bacterial low temperature requirement A protein (LtrA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3   6.3e-06     0.028     111     184 ..      14      91 ..       4      92 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.3e-06
        LtrA 111 aaradpklsarrlarvyaagllisavlwlagallpgsarlvlwlvalliel..llvPllarkr.t..tpvhaeHlaERy 184
                 aar+++++      r+y++++ +  +++++ga+l g+   +lwl + l+ l  +l+P+la    +   p + + la R+
  KIR65695.1  14 AARSQDDQ-LTSRQRRYVVMMGVRVACVIVGAILVGAQAPMLWLWLPLCGLgmVLIPWLAVLLaNdrPPKEKHRLANRF 91 
                 45555543.4677788899**************9999555555555555554466777665443132555555566665 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.1e-05     0.094     115     180 ..       8      71 ..       2     102 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
  FA_desaturase 115 glwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllfllalvl 180
                    ++++++ ar ++++ ++r++++++++ + ++ ++++++++++ ++++  + ++pl+ l+++l  +l
     KIR65695.1   8 PILITDAARSQDDQLTSRQRRYVVMMGVRVACVIVGAILVGAQAPML--WLWLPLCGLGMVLIPWL 71 
                    45788889999999999998777777777774444444444444444..55555555555555544 PP

>> Adipogenin  Adipogenin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.9e-05      0.13      19      45 ..      54      80 ..      48     104 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.9e-05
  Adipogenin 19 fwlclpvalllfllivwlrfllsqdse 45
                +wl lp++ l ++li wl  ll++d  
  KIR65695.1 54 LWLWLPLCGLGMVLIPWLAVLLANDRP 80
                7**********************9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 830.30
//
Query:       KIR65696.1  [L=305]
Description: ribokinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-49  166.8   8.6    8.1e-49  166.5   8.6    1.0  1  PfkB           pfkB family carbohydrate kinase
  ------ inclusion threshold ------
       0.37   11.1   1.7         18    5.8   0.1    3.2  4  Nitro_FeMo-Co  Dinitrogenase iron-molybdenum cofactor


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.5   8.6   9.1e-53   8.1e-49       3     296 ..      12     302 ..      11     305 .] 0.91

  Alignments for each domain:
  == domain 1  score: 166.5 bits;  conditional E-value: 9.1e-53
                 EEEEEEEEEEEEEEECSSH.TTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTT CS
        PfkB   3 kvvviGealidliavsekl.egelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvded 100
                 ++vv+G+++ d++av  ++ +  + + +t++ + GG +aN+A  la +g+ v+++gavGdD++G++  +el+ +gvd+  v++  + rt+ ++iv+++d
  KIR65696.1  12 RIVVVGDLITDVVAVLGGPlATGSDTPATIRVTGGGQAANTAAWLAAQGVPVTMVGAVGDDDAGRDRVAELERAGVDC-AVERHVG-RTTGTVIVLTGD 108
                 69**************999777777*****************************************************.5555555.555556666669 PP

                 SEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEES..EECTTSHHHHHHHHHHHHHHTTE..EEEEECESSSHH....HHHHHHHHHCTESEEEEEH CS
        PfkB 101 gertivfnrgaaadltkeeleededlleeadllyisg..llsselpeavleelaeaaknggt..fdpnlldplgaq....fkeallellaladllkpne 191
                 gert+v+ rga+  l   +++  ++    a +l++s+  ll+ +++ a l++la+a++ g t  +d    +          + a+l++++ +dll +n+
  KIR65696.1 109 GERTMVTERGANLRLGAGHVDAALAGAPDARHLHLSAypLLDVGSRGAGLRALAAARERGLTtsVDAASAA----PlrrvGATAFLTWVRDVDLLLVNA 203
                 9*******************9999999**********************************6554444444....444568999*************** PP

                 HHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH CS
        PfkB 192 eElealtgekledieealaalhklkakgaktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvv 290
                 +E++ l+g    d++  ++al +     a+ vvv++G+ Ga+++++  ++ v + + v v D+tGAGD+f++g+l+a+l+g+  + al +a  ++al+v
  KIR65696.1 204 DEAAVLAGGL--DPAAQARALTA----TARRVVVKRGAAGAVWADRASTVSVAPTRRVAVADVTGAGDAFAAGLLSAWLAGAGPRAALDRAGDLGALAV 296
                 **********..77777777665....689********************************************************************* PP

                 TSSSSS CS
        PfkB 291 qkkgai 296
                 ++ ga+
  KIR65696.1 297 STIGAR 302
                 **9997 PP

>> Nitro_FeMo-Co  Dinitrogenase iron-molybdenum cofactor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.002        18      38      66 ..      44      72 ..      36      92 .. 0.75
   2 ?    3.1   0.0     0.014   1.2e+02       5      36 ..      91     119 ..      87     135 .. 0.79
   3 ?   -2.4   0.0      0.67     6e+03      51      70 ..     201     220 ..     188     238 .. 0.67
   4 ?   -2.1   0.0      0.55   4.9e+03      49      67 ..     284     303 ..     276     305 .] 0.67

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.002
                   TSSCSSTHHHHHHHHTT-SEEEESSSCHH CS
  Nitro_FeMo-Co 38 aegggggklaqllaeegvdvvivgkiGpr 66
                   ++gg+  ++a++la++gv v +vg++G  
     KIR65696.1 44 TGGGQAANTAAWLAAQGVPVTMVGAVGDD 72
                   57899999*****************9653 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.014
                    B-STCCC-SEEEEEEESSSCEEEEEEEE.GCC CS
  Nitro_FeMo-Co   5 vdqhFGrapyFaiyeveegevkivenrveeaa 36 
                    v  h Gr+   +i+ + +ge+++v +r    a
     KIR65696.1  91 VERHVGRTTGTVIVLTGDGERTMVTER---GA 119
                    899********************9999...32 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.67
                    HHTT-SEEEESSSCHHHHHH CS
  Nitro_FeMo-Co  51 aeegvdvvivgkiGpralak 70 
                     +++  +v++g+  p a+a+
     KIR65696.1 201 VNADEAAVLAGGLDPAAQAR 220
                    44566677777777777665 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.55
                    HHHH.TT-SEEEESSSCHHH CS
  Nitro_FeMo-Co  49 llae.egvdvvivgkiGpra 67 
                     l+   +  ++ v+ iG r+
     KIR65696.1 284 ALDRaGDLGALAVSTIGARP 303
                    45555677888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2155.79
//
Query:       KIR65697.1  [L=308]
Description: pseudouridine-5'-phosphate glycosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.7e-113  377.4   2.8   5.3e-113  377.2   2.8    1.0  1  Indigoidine_A  Indigoidine synthase A like protein


Domain annotation for each model (and alignments):
>> Indigoidine_A  Indigoidine synthase A like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  377.2   2.8    3e-117  5.3e-113       1     291 []      11     301 ..      11     301 .. 0.99

  Alignments for each domain:
  == domain 1  score: 377.2 bits;  conditional E-value: 3e-117
                    .EEE---TTS-EEEE-SHHHHTSS-HHHHHHHHHHHHHHHHHHT-EEEEEEEETTEEEES--HHHHHHHHHH-....EE-GGGHHHHHHHT--EEE CS
  Indigoidine_A   1 eVkealaegkpvVALEstiithGlpypenlelaleveaivreegavPAtiaildGkikvGlseeelerlakkakkvaKvsrrdlalvlakkldgat 96 
                    eV++al++++pvVALEsti++hGlp p+nl++a+e+e++vr++gavPAti+++ G+++vGl+++el+rla+  + v K+s rdla+++a ++dgat
     KIR65697.1  11 EVAAALRDRRPVVALESTIVSHGLPRPDNLRVAREIEQAVRAAGAVPATIGMVGGQLVVGLDDAELTRLASV-DGVSKLSVRDLAIAAADGADGAT 105
                    89*********************************************************************7.68********************* PP

                    -HHHHHHHHHHTT--EEE-S-B--B-TT...SS-B-HHHHHHTTS-EEEEESBB-TTS-HHHHHHHHHHTT--EEEES-SB--BTTBS--S-B--. CS
  Indigoidine_A  97 TvaatmilAalagIkvfatggiGGVhrgaeesmDvSaDLteLartpvavvcaGvksiLdiprtleyLetqgvpvvtyktdefpaFytresgvkvpl 192
                    Tvaat ++Aa+agI vfatgg+GGVhr+a++++D SaDL +Lartp+avvcaGvksiLd+++tle+Let gv+vv+y+t++fp+Fy ++ g+++++
     KIR65697.1 106 TVAATSAVAAAAGIGVFATGGLGGVHREAATTFDESADLGTLARTPIAVVCAGVKSILDVGATLERLETLGVAVVGYRTRRFPGFYLTDAGFDLDW 201
                    ************************************************************************************************ PP

                    EE-SHHHHHHHHHHHHHTT--.SEEEEE----GGG---HHHHHHHHHT------.....GGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH CS
  Indigoidine_A 193 rvesaeeaAkllkakeelglk.sgvlvavPipeeaaldkeeiekaieealeeaeekgikGkevTpfllkrikeltkgksleanialvknnarvaak 287
                    +v+s+e++A++l+a+++ g++ +g++va+P p++ +ld + ++++++e l+  e++g++Gk+vTp+ll++++++t+g+sl++n++++ +na +aa+
     KIR65697.1 202 SVDSPEQVADVLAARDAHGVHgGGLIVANPLPADEQLDPALHDRTLAEGLALLERDGVTGKAVTPYLLAHFHSATEGASLAVNVRIILRNADLAAR 297
                    ******************998467999********************************************************************* PP

                    HHHH CS
  Indigoidine_A 288 iAve 291
                    iAv+
     KIR65697.1 298 IAVA 301
                    **85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2064.43
//
Query:       KIR65698.1  [L=72]
Description: hypothetical protein TK50_10110 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-26   91.4   0.4    2.5e-26   91.2   0.4    1.0  1  DUF3039   Protein of unknown function (DUF3039)


Domain annotation for each model (and alignments):
>> DUF3039  Protein of unknown function (DUF3039)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.4   1.4e-30   2.5e-26       2      55 ..      15      69 ..      14      70 .. 0.96

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 1.4e-30
     DUF3039  2 gdaerfaHYvkkdkiaesavtGtpVvALCGkvwvptrdpk.kfPvCpeCkeiyes 55
                +  ++++HYv+kdkiaesav+Gt VvALCG+ +++t+++k ++PvCp+Ckeiyes
  KIR65698.1 15 DTGPEMFHYVRKDKIAESAVMGTFVVALCGEKFPVTKAAKpGSPVCPKCKEIYES 69
                56799************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 541.40
//
Query:       KIR65699.1  [L=216]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-41  140.3  31.8    1.2e-21   76.4   7.0    2.6  3  UPF0126   UPF0126 domain


Domain annotation for each model (and alignments):
>> UPF0126  UPF0126 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   7.0   6.5e-26   1.2e-21       2      77 ..       9      83 ..       8      84 .. 0.95
   2 !   75.3  10.7   1.4e-25   2.5e-21       2      76 ..      95     167 ..      94     169 .. 0.96
   3 ?   -2.3   0.3      0.23   4.2e+03       5      13 ..     175     183 ..     173     191 .. 0.56

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 6.5e-26
                HHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHTTSSSSGHHHSSTCHHHHHHHHHHHHHHHH CS
     UPF0126  2 ildaiGlaafavsGalvAlkkgldllgvvvlGvvTAvgGGvlRDvllgrevPvvllreelyataallgalvvvlla 77
                ++d+ G+a+fa+sGa++A++k+ldl+gvv++G+v A+gGG+lRD++++ evP++++ ++ ya++a+l+a ++++l+
  KIR65699.1  9 LADLTGVAVFAASGASAAVAKRLDLFGVVFVGFVAALGGGILRDLVID-EVPPLAFADWRYAATAALTAGATFWLH 83
                689*********************************************.6999999***************99987 PP

  == domain 2  score: 75.3 bits;  conditional E-value: 1.4e-25
                 HHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHTTSSSSGHHHSSTCHHHHHHHHHHHHHHH CS
     UPF0126   2 ildaiGlaafavsGalvAlkkgldllgvvvlGvvTAvgGGvlRDvllgrevPvvllreelyataallgalvvvll 76 
                 +lda+Gl++f+v+G+l+Al++g+ ++g+++lG++TA+gGG+ RD+l+g e+Pvvl re +ya+aal+ga++v ll
  KIR65699.1  95 VLDAAGLGLFTVTGTLKALDAGVPAVGACLLGMLTAIGGGLGRDLLTG-EIPVVLRRE-IYAVAALAGAVAVALL 167
                 89**********************************************.6*****886.************9987 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.23
                 HHHHHHHHH CS
     UPF0126   5 aiGlaafav 13 
                 a+Gl a av
  KIR65699.1 175 AAGLTAAAV 183
                 555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1667.48
//
Query:       KIR65700.1  [L=577]
Description: hypothetical protein TK50_10120 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-12   46.8   0.0    6.2e-12   45.9   0.0    1.4  1  ResIII          Type III restriction enzyme, res subunit
    2.8e-06   27.2   0.0    2.1e-05   24.3   0.0    2.1  2  DEAD            DEAD/DEAH box helicase
    8.5e-06   25.6   1.1    8.5e-06   25.6   1.1    1.9  2  AAA_30          AAA domain
    0.00032   21.0   0.3    0.00091   19.6   0.3    1.8  1  AAA_19          AAA domain
    0.00042   20.6   0.0    0.00081   19.7   0.0    1.5  1  Helicase_C      Helicase conserved C-terminal domain
      0.001   19.4   0.2      0.014   15.6   0.1    2.8  3  AAA_22          AAA domain
  ------ inclusion threshold ------
      0.012   16.0   0.0      0.075   13.5   0.0    2.2  1  AAA             ATPase family associated with various cellula
      0.012   15.2   0.6      0.012   15.2   0.6    3.8  4  AAA_25          AAA domain
      0.014   14.8   0.2      0.031   13.7   0.2    1.5  1  PhoH            PhoH-like protein
      0.096   11.9   0.0       0.15   11.3   0.0    1.2  1  DUF2075         Uncharacterized conserved protein (DUF2075)
       0.15   11.4   0.0       0.24   10.7   0.0    1.3  1  DnaB_C          DnaB-like helicase C terminal domain
       0.17   11.9   0.0       0.93    9.5   0.0    2.0  1  AAA_14          AAA domain
       0.21   11.7   0.8        3.4    7.9   0.1    2.3  2  Pentapeptide_3  Pentapeptide repeats (9 copies)


Domain annotation for each model (and alignments):
>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   4.5e-15   6.2e-12       4     170 ..      14     166 ..      12     167 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 4.5e-15
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--...... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdst 102
                 lr +Q +a+ + l     +r + +  +++ G+GKT  a++++++ll  g  e + +++p+++l  q+ +  +++  + +     + + d +++      
  KIR65700.1  14 LRAWQRKALVEYLR----RRTEDFTAVATPGAGKTTFALRIAAELLADGTVEAVTVVAPTEHLKTQWAQSAARVGIQLD---AAFRNADLHSS-----A 100
                 67888888877773....567899999***********************************************99974...45555555555.....7 PP

                 .-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHH.HHHT---.SEEEEEESS-S CS
      ResIII 103 nkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswre.ilekfke.avllglTATpe 170
                 + +  v+t+ ++  +     + + +   +r  ++i DE H++g++ +w   ++ +f++   +l lT+Tp 
  KIR65700.1 101 DFHGAVVTYAQVGMAP----QVHRRRTMTRRTLVILDEIHHAGDSRTWGDgVKAAFEPaVRRLMLTGTPF 166
                 8889999999999999....789999999999************99**99999999763779*******7 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.6e-08   2.1e-05       4     137 ..      18     143 ..      15     168 .. 0.79
   2 ?    0.3   0.0      0.37   5.1e+02     136     172 ..     408     443 ..     396     445 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.6e-08
                 HHHHHHHHH..TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   4 Qaeaiplil..gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 Q++a+ + l  + +d+ + a  G+GKT+ +l  + + ++   + t   + +v+Pt+ L  q ++ + +++ ++d    + + + a  +  +++ +g+ +
  KIR65700.1  18 QRKALVEYLrrRTEDFTAVATPGAGKTTFALRIAAELLA---DGTVEAVTVVAPTEHLKTQWAQSAARVGIQLD----AAFRN-ADLHSSADF-HGAVV 107
                 77777777755668**************99999998885...466668889******************99876....33343.333444555.78999 PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT.T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlldq.g 137
                 +++  g+  ++ ++++  + + ++++lDE++   d+  
  KIR65700.1 108 TYAQVGMAPQVHRRRT--MTRRTLVILDEIHHAGDSrT 143
                 9999999999777777..99999********9988744 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.37
                 TTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD 136 qgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kd 172
                 +gf d++ + +++ +q++ +  l++++ +lSAT++ ++
  KIR65700.1 408 EGFDDDLLERAQRDDQASGE--LEKRFAALSATAElDQ 443
                 47777777766676665555..5577*******98555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   1.1   6.2e-09   8.5e-06       2     103 ..      14     142 ..      13     165 .. 0.73
   2 ?   -3.0   0.1       3.7   5.1e+03      56      67 ..     302     313 ..     287     332 .. 0.59

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 6.2e-09
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKtt.alkalreaweaa.ggrviglAptgkaAkvLaeelg...i..eastiakllkrlk............ 81 
                 l+a Q++a+ + l  +    ++++ +G+GKtt al+ ++e++++   + v ++Apt+    + a+++    i  +a+  +      +            
  KIR65700.1  14 LRAWQRKALVEYLRRRTEDFTAVATPGAGKTTfALRIAAELLADGtVEAVTVVAPTEHLKTQWAQSAArvgIqlDAAFRNA-----Dlhssadfhgavv 107
                 67789999999999999999**********9736788888888885699********999998865442112332222222.....2222335777999 PP

      AAA_30  82 ............grarlepgtllivDEagmv.dtk 103
                             +r +++++tl+i DE+  + d++
  KIR65700.1 108 tyaqvgmapqvhRRRTMTRRTLVILDEIHHAgDSR 142
                 9999*******866788888*******98884444 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.7
      AAA_30  56 gkaAkvLaeelg 67 
                 +kaA vL+++ g
  KIR65700.1 302 EKAAVVLSDDQG 313
                 345555555544 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3   6.6e-07   0.00091      13     112 ..      33     136 ..      18     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6.6e-07
      AAA_19  13 llvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae......atTiHrlalldfddlltealelle...eaeeekklqe 102
                 +  +a pG GKT+    i a+l++ g+v  e +++va+t++   + +++ a +g +         +H+    df++ + + +++     + ++++++++
  KIR65700.1  33 FTAVATPGAGKTTFALRIAAELLADGTV--EAVTVVAPTEHLKTQWAQSAARVGIQldaafrNADLHSS--ADFHGAVVTYAQV-GmapQVHRRRTMTR 126
                 456799********************88..9**********9999999998888887777774445555..4555544222222.24456778888888 PP

      AAA_19 103 eellivDEfq 112
                 ++l+i DE+ 
  KIR65700.1 127 RTLVILDEIH 136
                 88*****986 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   5.9e-07   0.00081      57     110 ..     316     369 ..     276     370 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.9e-07
                 HHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSST CS
  Helicase_C  57 eileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRa 110
                 + ++ f + e++ L+a +++++G+dip++ + +      ++  + q+iGR  Ra
  KIR65700.1 316 ARIATFAASEQRWLVAVRMVSEGVDIPRLAVGVYATSASTPLYFAQAIGRFVRA 369
                 557788888999*****************************************8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1     1e-05     0.014      11     104 ..      36     139 ..      33     168 .. 0.69
   2 ?   -1.4   0.0       1.9   2.6e+03      42      70 ..     345     373 ..     322     392 .. 0.82
   3 ?   -1.4   0.0       1.9   2.7e+03      26      73 ..     490     536 ..     480     564 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1e-05
      AAA_22  11 tGesGtGKTtllrrlleqldeeakaeeerpevv.fvtlpsst.sskdllrellralglelka.................erlsseellealeqalrara 90 
                 ++ +G+GKTt + r++ +l          +++v  vt+ ++t  +k+ + + +  +g +l+a                            ++ ++++r+
  KIR65700.1  36 VATPGAGKTTFALRIAAELL--------ADGTVeAVTVVAPTeHLKTQWAQSAARVGIQLDAafrnadlhssadfhgavV----TYAQVGMAPQVHRRR 122
                 678****************7........5555556666666666777777777777777777778887777776533222....222233444444444 PP

      AAA_22  91 v...ielliiDEaqhlr 104
                 +   + l+i+DE++h  
  KIR65700.1 123 TmtrRTLVILDEIHHAG 139
                 47788**********74 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.9
      AAA_22  42 vvfvtlpsstsskdllrellralglelka 70 
                  v v+++s +++  +++++ r++  ++ +
  KIR65700.1 345 AVGVYATSASTPLYFAQAIGRFVRARRPG 373
                 568999999**********9999877766 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.9
      AAA_22  26 leqldeeakaee...erpevvfvtlpsstsskdllrellralglelkaerl 73 
                 + q  ++a   e   e+++ ++  +p+++s ++ + +l r+l+    a r+
  KIR65700.1 490 AAQRRRAA---EraaEPAPAATAAPPQPMSAAQRRVALRRQLNALVAA-RH 536
                 33332222...1455788888888888888888888887777765555.44 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.5e-05     0.075       5      75 ..      37     146 ..      34     177 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.5e-05
                 SSTTSSHHHHHHHHHHHH....THEEEEEETTTCSSS..............................STTHHHHHHHHHHHHHHHTS..TSEEEEEETG CS
         AAA   5 GppGtGKTllakavakel....gvefleisgsellsk..............................yvgesekkirelfkeakeka..kpsilfiDEi 67 
                  +pG GKT++a  +a el     ve +++ +++   k                                  + +++ +  +  ++    + + +++DEi
  KIR65700.1  37 ATPGAGKTTFALRIAAELladgTVEAVTVVAPTEHLKtqwaqsaarvgiqldaafrnadlhssadfhGAVVTYAQVGMAPQVHRRRTmtRRTLVILDEI 135
                 57***************8666536666655555553335555555555555555555666666665544445555555555544444644589999999 PP

                 GGHHHHH...T CS
         AAA  68 dalaksr...s 75 
                 +  + sr   +
  KIR65700.1 136 HHAGDSRtwgD 146
                 99988885433 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.6   8.6e-06     0.012      22     151 ..      19     135 ..      11     146 .. 0.57
   2 ?    1.8   0.1      0.11   1.5e+02      97     146 ..     248     307 ..     157     331 .. 0.80
   3 ?    1.1   0.0      0.19   2.6e+02     113     154 ..     411     452 ..     388     465 .. 0.76
   4 ?   -2.4   0.1       2.1   2.9e+03      83     138 ..     521     572 ..     515     575 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.6e-06
      AAA_25  22 rrwlvkgllpagelallaGapgtGKttlaldlalava.tGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal...........rddarllvldl 108
                 r+ lv+ l+++ e    ++ pg+GKtt+al +a++++  G  +      e + +++  +E    ++++ +++vg +l           ++d + +v+++
  KIR65700.1  19 RKALVEYLRRRTEDFTAVATPGAGKTTFALRIAAELLaDGT-V------EAV-TVVAPTEHLKTQWAQSAARVGIQLdaafrnadlhsSADFHGAVVTY 109
                 677888888888888899******************95433.2......223.3333445555555555555555552111111333222222222222 PP

      AAA_25 109 agveslpLfakdrggtl.ltadvdaleaaieevegvrlvviDpl 151
                 a+              +  +++v++ ++++++     lv++D +
  KIR65700.1 110 AQ--------------VgMAPQVHR-RRTMTR---RTLVILDEI 135
                 22..............122344322.444444...256666655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.11
      AAA_25  97 l............rddarllvldlagv.eslpLfakdrggtlltadvdaleaaieevegvrlv 146
                 l            ++darl+vl  ag+ +   L+ + +++t  ++ +++l+++++  e++++v
  KIR65700.1 248 LdpagdwmpqvlrAADARLTVLRNAGMpDAGGLIIASDQQT--ARSYAKLIERLTG-EKAAVV 307
                 34444444555656689999999999988888887554444..4778888888888.766666 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.19
      AAA_25 113 slpLfakdrggtlltadvdaleaaieevegvrlvviDplsra 154
                 + +L++  +++ ++ +++++  aa+ ++++++ v++D  s+ 
  KIR65700.1 411 DDDLLERAQRDDQASGELEKRFAALSATAELDQVIFDGASFG 452
                 445777777777778999999999999999*******98875 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 2.1
      AAA_25  83 edelrrRlravgealrddarllvldlagveslpLfakdrggtlltadvdaleaaie 138
                 +  lrr l a+ +a+ ++ +l+  +++ +  ++L     g + ++a +++le++i 
  KIR65700.1 521 RVALRRQLNALVAARHHRTGLPHGKIHAE-LRRLCG---GPPSAQATIEQLEERIA 572
                 55677777777777777777777776554.555543...56667777777777765 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   2.2e-05     0.031      10      62 ..      20      73 ..      13     139 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.2e-05
                HHHHHHHH.H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT CS
        PhoH 10 keylealk.kndivfaiGpaGtGKtylavalavealkkkkvkriiltrpaveag 62
                k+++e l+ + +  +a++  G+GKt +a+ +a+e+l +++v+ + ++ p+ + +
  KIR65700.1 20 KALVEYLRrRTEDFTAVATPGAGKTTFALRIAAELLADGTVEAVTVVAPTEHLK 73
                56677777645556788899************************9999976544 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00011      0.15      10     106 ..      39     144 ..      37     160 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
     DUF2075  10 aGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakke.....ekkkkkeafeklssfinnlsef......kkaeekkeepkedvvivDEA 97 
                 +G+GKt  +l+++ael   +++  +++ +v   + l+ + a +  +         ++++++ ++ f  ++ ++       +  ++++  + ++vi DE 
  KIR65700.1  39 PGAGKTTFALRIAAEL--LADGTVEAVTVVAPTEHLKTQWAQSAARvgiqlDAAFRNADLHSSADFHGAVVTYaqvgmaPQVHRRRTMTRRTLVILDEI 135
                 9***************..777777777777666655555554444466776444445555555566655555566667789999999999********* PP

     DUF2075  98 hrlltksdq 106
                 h + +++++
  KIR65700.1 136 HHAGDSRTW 144
                 *99887665 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00018      0.24      26      74 ..      37      83 ..      28     116 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00018
                EXTTSSHHHHHHHHHHHHHHCSTSEEEEEESSSXHHHHHHHHHHHHHTX CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 26 arpsmGktalalniaenaavkeklpvavfslemsaeqlvqRllsseaei 74
                a p+ Gkt++al ia++  ++ +  v  + +  ++e+l ++   s a++
  KIR65700.1 37 ATPGAGKTTFALRIAAELLADGT--VEAVTVVAPTEHLKTQWAQSAARV 83
                68*************99876444..444444455555555555555544 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00067      0.93      14      99 ..      42     163 ..      40     166 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00067
      AAA_14  14 GKTtllkqlikell..........vkkesilyinldderd...............kkladpekllelileklke......................... 62 
                 GKTt++ +++ ell          v + + l  ++ +                                    +                         
  KIR65700.1  42 GKTTFALRIAAELLadgtveavtvVAPTEHLKTQWAQSAArvgiqldaafrnadlH-----------------Ssadfhgavvtyaqvgmapqvhrrrt 123
                 67777777776666655433333322222222222222223333333222221111.................11222222222233334445566666 PP

      AAA_14  63 .ekktylflDEiqev...pewekalkslvdegknldvivtG 99 
                   ++t+++lDEi+++   ++w + +k  ++     ++++tG
  KIR65700.1 124 mTRRTLVILDEIHHAgdsRTWGDGVKAAFEPA-VRRLMLTG 163
                 6799**********966666777777766655.33566665 PP

>> Pentapeptide_3  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0025       3.4      21      38 ..      90     107 ..      87     111 .. 0.78
   2 ?    1.8   0.1      0.19   2.7e+02      31      45 ..     439     452 ..     433     455 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0025
  Pentapeptide_3  21 asFsnadF.gsadFsgarF 38 
                     a F+nad+ +sadF ga  
      KIR65700.1  90 A-FRNADLhSSADFHGAVV 107
                     3.99999999999999865 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.19
  Pentapeptide_3  31 adFsgarFtgdvdFs 45 
                     a ++ ++F+ +++F+
      KIR65700.1 439 AELDQVIFD-GASFG 452
                     445555555.55554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 3729.84
//
Query:       KIR65701.1  [L=271]
Description: inositol-phosphate phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-54  183.5   0.6    6.4e-54  183.3   0.6    1.0  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.3   0.6   3.6e-58   6.4e-54       4     242 ..      10     240 ..       8     265 .. 0.91

  Alignments for each domain:
  == domain 1  score: 183.3 bits;  conditional E-value: 3.6e-58
                 HHHHHHHHHHHHHHHHHHHHTTTSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCCCT.SSSSSEEEEEEEEETHHHHHHT CS
  Inositol_P   4 evtkaavelaakagevlreefsenelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakgekseltedgltwivDPiDGTknFvrg 102
                 e++++av++a++a++   + +  +  v+++ +k++ +d+vtaad+ave+ +l+al++ +p++++lgee +a  +    +++++ wi+DPiDGT+n++ g
  KIR65701.1  10 ELLEIAVDVARAAAATAHRMWA-EG-VSVAATKSTVTDVVTAADRAVERQVLDALRRIRPHDAVLGEEYGAGDA---APAARVRWILDPIDGTVNYLYG 103
                 678999*****99999999998.33.33334446********************************99777776...89999***************** PP

                 -SG-EEEEEEEETTEEEEEEEEETTTTEEECEETTTEEEETCEEEEECTTSEGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCHEEEBESSHHHHHH CS
  Inositol_P 103 ipqvaVsigllvegkpvlGviaqPllgqlysaakgkGaflngeklplsrappiseallvtlfavssrkdtseasllekvesavsaegvrsvgssalkla 201
                  p++aVs++  v+g++v+Gv+ ++++g  ++a++g Ga+  ge+l++s ++++ +al++t f ++  ++ ++a +l+++ ++v++   r++g++ ++l+
  KIR65701.1 104 LPCCAVSLAAEVDGQVVAGVVRNVFTGDEWTATAGGGAYRAGERLRCSAETDLGQALVATGFGYDPARRAHQARVLAGLIGHVRDV--RRQGAASVDLC 200
                 ************************************************************************************99..*********** PP

                 HHHHTSTSEEEEEC.EBHHHHHHHHHHHHHTTEEEEESSSC CS
  Inositol_P 202 avaeGkadaylefgrekkWDhAAGeaileeaGGvvtdakge 242
                 + aeG++day+e g ++ WDhAAG+++ +eaG  v  + g+
  KIR65701.1 201 LAAEGRLDAYYEKG-LNLWDHAAGALVGTEAGLLVGGLGGR 240
                 **************.*****************777666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1967.00
//
Query:       KIR65702.1  [L=176]
Description: hypothetical protein TK50_10140 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-13   50.3   0.3    6.2e-13   49.5   0.3    1.4  1  LytR_C           LytR cell envelope-related transcriptional a
  ------ inclusion threshold ------
      0.031   14.7   0.6      0.056   13.9   0.6    1.4  1  FeoB_associated  FeoB-associated Cys-rich membrane protein


Domain annotation for each model (and alignments):
>> LytR_C  LytR cell envelope-related transcriptional attenuator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.3     7e-17   6.2e-13       1      85 []      57     144 ..      57     144 .. 0.78

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 7e-17
      LytR_C   1 evkVeVlNgtgvsGlAarvadaLeerGftvgevgnagnadee....ttivyreaaaaaakalaaalglgelqedsvkdas..vtvvlGkdf 85 
                 +vk++V+N+t+++GlA++vad +++r f+v + gna +   +     +  y++++  +a+ l+a++  ++  + + k+++  v+vvlG+ f
  KIR65702.1  57 DVKINVYNATDEAGLAKKVADDFRNRKFQVKKEGNAKQ---QldgvAVLQYGPKGVGSAHLLRAYFLNNAEPKFDIKRKDdtVDVVLGNSF 144
                 69******************************555555...4555666667666668*********7666444444444478******987 PP

>> FeoB_associated  FeoB-associated Cys-rich membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.6   6.2e-06     0.056       3      36 ..      10      41 ..       8      45 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.2e-06
  FeoB_associated  3 iIVgliiaaavafvirrlikk.kkkGsCgggCsgC 36
                     ++Vgl+ ++a++fv++ ++++ + kG   g+ +gC
       KIR65702.1 10 VVVGLLAVVALVFVVVAVVRDtQGKG---GAAAGC 41
                     68999999*************85555...333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      652  (0.0363657); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1289.59
//
Query:       KIR65703.1  [L=98]
Description: dUTPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-41  138.4   2.0    9.3e-41  138.3   2.0    1.0  1  DUF4193   Domain of unknown function (DUF4193)


Domain annotation for each model (and alignments):
>> DUF4193  Domain of unknown function (DUF4193)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   2.0   5.2e-45   9.3e-41       1      98 []       1      98 []       1      98 [] 0.99

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 5.2e-45
     DUF4193  1 matDydapRktddeleedsleelkarraekasavvdedetdaaesfelPgadlsgeelsvrvipkqadEFtCtscFlvkhrsrlaeeedgqqiCrdCa 98
                matDydapR+++ +l edsleelkarr +++s++vd+de++ aesfelPgadl++eel+v+v+p q+dEF C++cFlv+hrs+la e++g+ iCr+C+
  KIR65703.1  1 MATDYDAPRRDEVDLGEDSLEELKARRVDSQSGAVDVDEAEVAESFELPGADLADEELTVKVLPMQQDEFRCARCFLVHHRSQLAVERNGELICRECV 98
                9*********99*************************************************************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 667.85
//
Query:       KIR65704.1  [L=167]
Description: alanine rich transmembrane potein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-45  153.0   9.2    6.9e-45  152.7   9.2    1.0  1  DUF3093   Protein of unknown function (DUF3093)


Domain annotation for each model (and alignments):
>> DUF3093  Protein of unknown function (DUF3093)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.7   9.2   3.8e-49   6.9e-45       2     140 .]      16     155 ..      15     155 .. 0.97

  Alignments for each domain:
  == domain 1  score: 152.7 bits;  conditional E-value: 3.8e-49
     DUF3093   2 YrErlwvplwwWllaalvalaaalvaaevglavavlv....aavlvalavvallalsrtrieVtdgeLrvgrarlplavvgrvealdaeakraalgrql 96 
                 Y+Erl+ p+w+Wl++ ++    + +a+e++l++++l+    ++vl++++v+al++l+r+r++V dgeLrv++arlp+++v+++  lda+ +r+ lg ++
  KIR65704.1  16 YTERLSLPWWLWLAGPAL---GGFLALELWLGAGGLRawlpFVVLLPATVAALWWLGRVRVAVADGELRVDDARLPVRFVADAVPLDAAGRREVLGVGA 111
                 ******************...88888888888888888888********************************************************** PP

     DUF3093  97 dpaAfvvlrgwiktavrveltDpeDptPywlvStrrPeeLaaal 140
                 dp Afvv+r+wi  av+v+l+Dp+DptP+w+vStr+P +Laaal
  KIR65704.1 112 DPLAFVVQRPWIAGAVQVVLDDPADPTPFWVVSTRDPVRLAAAL 155
                 ******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1116.76
//
Query:       KIR65705.1  [L=168]
Description: deoxyuridine 5'-triphosphate nucleotidohydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-29  102.7   0.0    1.3e-29  102.4   0.0    1.0  1  dUTPase   dUTPase


Domain annotation for each model (and alignments):
>> dUTPase  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   0.0   7.5e-34   1.3e-29       4     129 .]      17     146 ..      15     146 .. 0.94

  Alignments for each domain:
  == domain 1  score: 102.4 bits;  conditional E-value: 7.5e-34
                 TBEBESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHH.HEEEEE..EEEETTBTSEEEEEEEE-SSS.-EEE-TT-EEEE CS
     dUTPase   4 eiptrkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaak.glivvp..gvidsdyrGevkvvlfnltkk.dvkikkgdRiAq 98 
                 ++p ++ p++Ag Dl aa d+ ++pg++ lvpt+++i+lp+g+ +l+ pRSglaa+ g++v+   g +d+ yrGe+ v l+n+ ++ + ki +gdRiAq
  KIR65705.1  17 PLPAYSHPGDAGADLVAAADVELPPGGRALVPTGLAIALPEGYVGLVHPRSGLAARlGVTVLNapGTVDAGYRGEILVNLINHDREtPAKIARGDRIAQ 115
                 68999************************************************976255555466*******************9999*********** PP

                 EEEEEBECGEEEEESSTTTESSBTTXTTTTX CS
     dUTPase  99 Lifariltaeleevetlkatergeggfgssg 129
                 L+++r+  a + +v +l  ++rg gg gs+g
  KIR65705.1 116 LVVQRVARADFRPVAELPPSRRGVGGHGSTG 146
                 ****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1231.38
//
Query:       KIR65706.1  [L=211]
Description: hypothetical protein TK50_10165 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-61  204.6   2.2    1.1e-60  204.3   2.2    1.1  1  DUF3710   Protein of unknown function (DUF3710)


Domain annotation for each model (and alignments):
>> DUF3710  Protein of unknown function (DUF3710)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.3   2.2   6.2e-65   1.1e-60       1     175 [.      34     203 ..      34     204 .. 0.98

  Alignments for each domain:
  == domain 1  score: 204.3 bits;  conditional E-value: 6.2e-65
     DUF3710   1 GPfDaaeapeederlDLGsllvpvleglelqvevdektgrvvavtvvtgesalqlqafAAPkssglwdevraelaeslekaggeveeeeGpfGtElvae 99 
                 GP+D++eap+  +rlDLGsl +p+++++e++v++d+ +g +++v++v+g+salql +fAAP+s+g+wdevr+e+++sl ++g+ ++e++G++G+El+a+
  KIR65706.1  34 GPYDVSEAPDGVQRLDLGSLHIPAVADVEVRVQADP-EGVIQQVVLVHGQSALQLGVFAAPRSEGIWDEVREEIRQSLFNDGAAAQEVQGEYGPELHAR 131
                 9***********************************.9************************************************************* PP

     DUF3710 100 vpaksedgeaaqlvRfigvdGpRWlLrgvvtgpaasdeeaaelleevlrevvVvRgdepmpprelLplrlPkelae 175
                 v++   dg   + +Rf+g+dGpRW++rgv +g+aa+d++aa  l+e+l  +vV+Rg+e+ p+re+LplrlP+e+a+
  KIR65706.1 132 VRTP--DGL--TDLRFVGIDGPRWMVRGVYQGAAATDPAAAGPLRECLDGLVVDRGQEAKPVREPLPLRLPREVAD 203
                 *985..887..69***********************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1671.88
//
Query:       KIR65707.1  [L=127]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0024   17.8   0.1     0.0082   16.1   0.1    1.9  2  tRNA_anti-codon  OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.015   2.8e+02      47      60 ..      46      59 ..      42      67 .. 0.83
   2 !   16.1   0.1   4.5e-07    0.0082       1      68 [.      51     116 ..      51     125 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.015
                     -TTSEEEEEEEEEE CS
  tRNA_anti-codon 47 keGdvvrvtGrvkr 60
                      +G+vv v Gr+++
       KIR65707.1 46 ARGQVVCVNGRLRT 59
                     68999999999986 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 4.5e-07
                      EEEEEEEEEEE..EEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEECTTSSEEE CS
  tRNA_anti-codon   1 VtvaGrvtsis..drsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrrpggelel 68 
                      V+v Gr++++   +r +   + +dl Dg++ +++v+     ++    +++G ++ ++Grv  r+++   +
       KIR65707.1  51 VCVNGRLRTVVytPRTNLPTLEADLYDGSDVVTLVWLG---RRHIAGIEPGRHLTARGRVAVRDDR-KVI 116
                      7889999999999999999999****************...**********************999.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1069.08
//
Query:       KIR65708.1  [L=229]
Description: potassium transporter TrkA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-25   89.6   0.2    2.6e-25   88.9   0.2    1.3  1  TrkA_N           TrkA-N domain
    5.2e-15   55.0   1.7    2.3e-14   53.0   0.2    2.5  2  TrkA_C           TrkA-C domain
    1.8e-08   34.5   0.4    3.7e-08   33.5   0.3    1.5  1  NAD_binding_10   NAD(P)H-binding
    4.5e-07   30.4   0.1    9.1e-07   29.4   0.1    1.6  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    3.9e-06   27.2   0.5    7.9e-06   26.3   0.3    1.7  1  NAD_binding_7    Putative NAD(P)-binding
     0.0001   21.7   0.1    0.00015   21.1   0.1    1.3  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
     0.0001   22.3   0.1    0.00015   21.7   0.1    1.4  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
    0.00021   21.8   0.0    0.00053   20.5   0.0    1.7  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
    0.00041   20.0   0.0    0.00089   18.9   0.0    1.5  1  ApbA             Ketopantoate reductase PanE/ApbA
    0.00053   20.2   0.0    0.00099   19.3   0.0    1.5  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
    0.00061   19.8   0.0      0.001   19.0   0.0    1.5  1  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
     0.0012   19.3   0.1     0.0048   17.4   0.0    1.9  2  XdhC_C           XdhC Rossmann domain
     0.0016   17.9   0.0     0.0022   17.5   0.0    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0024   18.0   0.1     0.0053   16.8   0.1    1.8  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
     0.0079   16.0   0.1      0.013   15.3   0.1    1.4  1  DFP              DNA / pantothenate metabolism flavoprotein
      0.009   15.3   0.1      0.015   14.6   0.0    1.3  1  FAD_binding_3    FAD binding domain
  ------ inclusion threshold ------
      0.028   14.5   0.2      0.049   13.7   0.2    1.5  1  AdoHcyase_NAD    S-adenosyl-L-homocysteine hydrolase, NAD bin
      0.035   13.7   0.1      0.053   13.1   0.1    1.3  1  NmrA             NmrA-like family
      0.044   13.4   0.2        0.1   12.2   0.1    1.7  2  IlvN             Acetohydroxy acid isomeroreductase, NADPH-bi
      0.054   13.5   0.8       0.31   11.0   0.1    2.5  2  Glyco_transf_4   Glycosyltransferase Family 4
      0.059   13.2   0.8       0.12   12.2   0.8    1.5  1  Rossmann-like    Rossmann-like domain
      0.075   12.1   0.1      0.094   11.7   0.1    1.2  1  Lycopene_cycl    Lycopene cyclase protein
       0.11   12.8   0.2        0.2   11.9   0.2    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.12   11.8   0.0       0.18   11.1   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
       0.14   12.5   1.2       0.58   10.5   0.1    2.3  2  Gp_dh_N          Glyceraldehyde 3-phosphate dehydrogenase, NA


Domain annotation for each model (and alignments):
>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.2   3.7e-28   2.6e-25       1     115 [.       3     118 ..       3     119 .. 0.96

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 3.7e-28
                 EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEESSG CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraqdp 99 
                 i+i+G+G+vGrs+a+eL ++g++v++i+++++ ++  r   +e+v +da + + Leea+++ +d+v+aatgdd++n++++llak+ +  ++++ar++++
  KIR65708.1   3 IAIAGAGNVGRSIAQELIDNGHQVMLIERQPRMLRPDRVPAAEWVLADACELASLEEANVAGCDVVVAATGDDKVNLVVSLLAKTEFAVPRVVARVNRA 101
                 79*****************6668*************99999********************************************************** PP

                 GGHHHH.HHHTTSEEEE CS
      TrkA_N 100 ehaell.kklgadvvis 115
                 e++ l+ ++ g+dv++s
  KIR65708.1 102 ENEWLFtEQWGVDVAVS 118
                 ******777******98 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.74   5.3e+02      12      42 ..      10      39 ..       1      40 [. 0.75
   2 !   53.0   0.2   3.2e-17   2.3e-14       1      69 [.     149     216 ..     149     217 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.74
                GTTSBHHHHTHHHHS-EEEEEE-T-EEES-- CS
      TrkA_C 12 lvGktlkelnlrargvlvvairRggeliips 42
                 vG+++++  l ++g  v+ i R+ +++ p+
  KIR65708.1 10 NVGRSIAQ-ELIDNGHQVMLIERQPRMLRPD 39
                58999999.5555599999999987888775 PP

  == domain 2  score: 53.0 bits;  conditional E-value: 3.2e-17
                 CEEEEEE--GGGTTSBHHHHTHHHHS-EEEEEE-T-EEES--TT-B--TT-EEEEEEEHHHHHHHHHHH CS
      TrkA_C   1 lvevtvpagsplvGktlkelnlrargvlvvairRggeliipsgdtvLeeGDvllvvgspsdlaelrell 69 
                 lve+t+p+ +p+vG+++  + +++ ++ +vai Rg+++++ps+d+ +e+GD+l++v++ +  +++r+++
  KIR65708.1 149 LVEITLPPTAPYVGQPIHAVPIPR-DAALVAILRGKRVLVPSPDDPIEAGDELIFVCTAEVEDDVRAVI 216
                 79**********************.***********************************999999875 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.3   5.2e-11   3.7e-08       3      73 ..       8      77 ..       7     104 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 5.2e-11
                    TSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHH.HTT-SEEEES---TCC CS
  NAD_binding_10  3 tGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaea.lkgadaVvsalggggk 73
                     G+vGr +++el+++ gh+v ++ R+p  l    + +++e v +d+ + ++l+ea ++g+d+Vv+a+g ++ 
      KIR65708.1  8 AGNVGRSIAQELIDN-GHQVMLIERQPRMLRP-DRVPAAEWVLADACELASLEEAnVAGCDVVVAATGDDKV 77
                    7**************.5*************84.4569***************998679*********98775 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1   1.3e-09   9.1e-07       1      85 [.       2      88 ..       2     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.3e-09
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC....-EEECECHHHHHH..H-SEEEE-S-HHHHHHHHHHCGHHH CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg....vkvtavdneeaae..eadvvvlavkpedveevlselakda 85
                   +i+i GaGn+g+++a+ l+ +g   h+++++ +r+p  ++  +  +     +++++ +  e a+   +dvvv a    +v  v+s lak +
     KIR65708.1  2 RIAIAGAGNVGRSIAQELIDNG---HQVMLI-ERQPRMLRPDRVPAAewvlADACELASLEEANvaGCDVVVAATGDDKVNLVVSLLAKTE 88
                   79********************...****99.*****9999885554487755555554444333489*****999999998888886655 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.3   1.1e-08   7.9e-06       9      84 ..       2      87 ..       1     106 [. 0.76

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.1e-08
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvapevkeeleelvklaeeel..........ekdlegadlviaatddrelneriaeaaka 84
                   ++ ++G+G+v+ + ++ l+++g +v ++  +     +++v +ae  l          e++++g d+v+aat d+++n  +  +ak+
     KIR65708.1  2 RIAIAGAGNVGRSIAQELIDNGHQVMLIERQPRMLRPDRVPAAEWVLadacelasleEANVAGCDVVVAATGDDKVNLVVSLLAKT 87
                   688*************************99986666666664432211111223445688*****************998888875 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   2.1e-07   0.00015     144     235 ..       2      98 ..       1     121 [. 0.67

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.1e-07
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.....TTS-HHHH.HHHHHHHHHTTEEEEESCEEEEEEETTE.EEEEEETTSCEEEESEEEE- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrll.....raldkels.aaleealekeGvevklgtsvkeidgnge.klevvledgeeidadlvvva 234
                  ri++ G+G++G  +A++l + g++v l+e+ +r+l     +a +  l+ a+  + le+ +v+     +v++++g+++ +l v l  ++e+++  vv  
   KIR65708.1   2 RIAIAGAGNVGRSIAQELIDNGHQVMLIERQPRMLrpdrvPAAEWVLAdACELASLEEANVAGC--DVVVAATGDDKvNLVVSLLAKTEFAVPRVVAR 97 
                  79*********************************64322222222330333345566566655..55557777777555577777777887777777 PP

                  S CS
                  x RF
  Pyr_redox_2 235 v 235
                  v
   KIR65708.1  98 V 98 
                  6 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   2.1e-07   0.00015       2      57 ..       3      59 ..       2      88 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.1e-07
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH.HHHCCTTTTSS-H CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekiek.sleklvekgklke 57
                +a+ GaG +G++ia+ ++ +g++V l++++++ l+  +  +++  l+ + e  +l+e
  KIR65708.1  3 IAIAGAGNVGRSIAQELIDNGHQVMLIERQPRMLRPDRVPAAEwVLADACELASLEE 59
                89***************************9999986655443335666655555555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   7.4e-07   0.00053       1      36 [.       2      37 ..       2      53 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 7.4e-07
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSST CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkllr 36
                ++++ G+G++g   A++l + g++V ++er++++lr
  KIR65708.1  2 RIAIAGAGNVGRSIAQELIDNGHQVMLIERQPRMLR 37
                699*******************************93 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.2e-06   0.00089       1      32 [.       3      34 ..       3      41 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.2e-06
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsrr 32
                iai+GaG +G+ +a +L  +g++v li r++r
  KIR65708.1  3 IAIAGAGNVGRSIAQELIDNGHQVMLIERQPR 34
                89***************************984 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.4e-06   0.00099       1      65 [.       2      74 ..       2      97 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.4e-06
                   EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH........HHHHHHHHTT......EEE-SSHHHHHHHCSEEEE-SSS CS
  NAD_binding_2  1 kigfiGlGvMGsnmalnllkagykvavynrtk........ekveelvaeg......akaaesieelvasldvvitmvka 65
                   +i++ G G+ G+++a++l+++g++v++++r++               a++      +++a+  e+ va++dvv+    +
     KIR65708.1  2 RIAIAGAGNVGRSIAQELIDNGHQVMLIERQPrmlrpdrvP------AAEwvladaCELASLEEANVAGCDVVVAATGD 74
                   599****************************9444443322......33334433255555555668888988876555 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.5e-06     0.001       2      34 ..       3      35 ..       2      88 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.5e-06
                    EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHH CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrlwvreeel 34
                    ia+ GaG+ G ++A+ l +ngh+v+l+ r++ +
      KIR65708.1  3 IAIAGAGNVGRSIAQELIDNGHQVMLIERQPRM 35
                    9**************************999865 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   6.8e-06    0.0048       2      58 ..       4      79 ..       3      96 .. 0.87
   2 ?   -0.1   0.0       1.7   1.2e+03      19      65 ..     110     154 ..      80     215 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.8e-06
                EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE...................-EEEE--S-HHHHH CS
      XdhC_C  2 vifGaghvaqalarlaaalgfrvtvvdpreefatkerfpeade...................tavvvlthdhklDa 58
                +i Gag+v++++a+ +   g +v++++ ++++ +++r+p+a+                    ++vv++t d k   
  KIR65708.1  4 AIAGAGNVGRSIAQELIDNGHQVMLIERQPRMLRPDRVPAAEWvladacelasleeanvagcDVVVAATGDDKVNL 79
                79*************************************7755999999999999999999988888888877664 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.7
                 HHTEEEEEEES-GGGG-GGG-TT-SE..-EEEE--S-HHHHHHHHHHHS CS
      XdhC_C  19 algfrvtvvdpreefatkerfpeade..tavvvlthdhklDaealeaal 65 
                 + g++v v +pr  +a +e++    +  + v ++t   + +a+++e  l
  KIR65708.1 110 QWGVDVAVSKPRVMAALVEEAV---TvgDLVRLMTFR-QGEANLVEITL 154
                 4555555555555444333333...123444444443.33444444444 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     3e-06    0.0022       3      71 ..       5      71 ..       3     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3e-06
                EETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE- CS
   Epimerase  3 VtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihl 71
                ++Ga G +G+ ++++l ++g++v+ + r+++  +  r + +e+v +d ++ ++le++    ++d+v+ +
  KIR65708.1  5 IAGA-GNVGRSIAQELIDNGHQVMLIERQPRMLRPDRVPAAEWVLADACELASLEEANV-AGCDVVVAA 71
                6665.************************888888888888999999999999999866.499999877 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   7.3e-06    0.0053      14      88 ..       2      77 ..       1     136 [. 0.81

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.3e-06
                  EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHH..HHHHHHHHHT.ET-EEEEGCGHHHH.HHT-SEEEE-SSSSS- CS
  Shikimate_DH 14 kvlliGaGemaelvakhLlakgvkkvvvaNRtle..rakelaeelkgeeiealkleelkel.laeadvvisataseep 88
                  ++ + GaG++++ +a+ L+++g + v+ + R+ +  r +++    + + + a++l +l+e+ +a +dvv++at+  ++
    KIR65708.1  2 RIAIAGAGNVGRSIAQELIDNGHQ-VMLIERQPRmlRPDRV-PAAEWVLADACELASLEEAnVAGCDVVVAATGDDKV 77
                  68999*****************99.8888998762233444.22334556788888887644999********98765 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.9e-05     0.013      28      89 ..       8      71 ..       2      88 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.9e-05
                --HHHHHHHHHHHHTT-EEEEEE-S-SS---TT-EEEE..--SHHHHHHHHHHHHTT-SEEEE- CS
         DFP 28 SGkmGyalAeaaaarGaeVtlvsgpvsletpegvevvk..vesaeemleaveealkeadivima 89
                 G  G ++A+++++ G++V l+  + ++  p++v   +    +a e+++  e++++ +d+v++a
  KIR65708.1  8 AGNVGRSIAQELIDNGHQVMLIERQPRMLRPDRVPAAEwvLADACELASLEEANVAGCDVVVAA 71
                799********************99776677777555422667777777777777778887754 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.1e-05     0.015       4      35 ..       3      34 ..       1      45 [. 0.90

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-05
                   EEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3  4 VlIVGaGpaGlmlallLseaGvrvvlvekrst 35
                   ++I GaG +G + a++L   G +v+l+e++ +
     KIR65708.1  3 IAIAGAGNVGRSIAQELIDNGHQVMLIERQPR 34
                   78***************************876 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   6.8e-05     0.049      26      99 ..       3      85 ..       1     136 [. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.8e-05
                   EEEE--SHHHHHHHHHHHHCT-EEEEE-S-H.......HHHHH.HHCTT-EE--HHHC.TTT-SEEEE-SSSSSSB-HHHHCC CS
  AdoHcyase_NAD 26 avvaGyGdvGkGcaaslkglGarvivtevdP.......icalq.aameGfevvtleev.vkkadivvtttGnkdiitlehlkk 99
                   + +aG G+vG+  a+ l   G +v++ e  P       + a    + +  e++ lee+ v+ +d+vv++tG + +  +  l +
     KIR65708.1  3 IAIAGAGNVGRSIAQELIDNGHQVMLIERQPrmlrpdrVPAAEwVLADACELASLEEAnVAGCDVVVAATGDDKVNLVVSLLA 85
                   5699************************887333222233443156799******99846789********998866655554 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   7.4e-05     0.053       4      79 ..       5      77 ..       3     100 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.4e-05
                SSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHH.HTT-SEEEE---GGS-HH CS
        NmrA  4 iGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvea.lkgvdvvfsvtgfyskei 79
                i ++G+ G+s+++ l+++gh+v  + R+++  + + + +  +e v +d+ + +sl+ea + g dvv ++tg  ++++
  KIR65708.1  5 IAGAGNVGRSIAQELIDNGHQVMLIERQPRMLRPDRVPA--AEWVLADACELASLEEAnVAGCDVVVAATG--DDKV 77
                5678*************************9988888876..688888888899998887899999999998..5555 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00014       0.1       6      73 ..       2      77 ..       1      91 [. 0.73
   2 ?   -2.3   0.0         4   2.9e+03      53      67 ..     126     140 ..     107     156 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00014
                -EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-.......HHHHHHHHTT-EEEEHHHH.HHT-SEEEE-S-HHHH CS
        IlvN  6 kiaviGyGsqGhaqalnlrdsgldvvvglregs.......ksvkkAkeegfevltvaea.vkkadvvmiliPDelq 73
                +ia+ G G+ G++ a++l d+g +v++  r+ +         ++   +++ e ++++ea v+  dvv+  + D   
  KIR65708.1  2 RIAIAGAGNVGRSIAQELIDNGHQVMLIERQPRmlrpdrvPAAEWVLADACELASLEEAnVAGCDVVVAATGDDKV 77
                69***********************998887765555433233344466677777777634567888777777655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4
                 EHHHHHHT-SEEEE- CS
        IlvN  53 tvaeavkkadvvmil 67 
                  v+eav+  d+v ++
  KIR65708.1 126 LVEEAVTVGDLVRLM 140
                 344444444444443 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00043      0.31       3      38 ..       7      45 ..       5     113 .. 0.87
   2 ?   -0.9   0.1       1.9   1.4e+03       7      69 ..     122     181 ..     120     190 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00043
  Glyco_transf_4  3 GverhvleLaraLarrGheVtvvtpgddgpleeev...e 38
                    G++++ + +a++L ++Gh+V ++ ++++   +++v   e
      KIR65708.1  7 GAGNVGRSIAQELIDNGHQVMLIERQPRMLRPDRVpaaE 45
                    999999*****************9999888888754442 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.9
  Glyco_transf_4   7 hvleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllk 69 
                     ++  L+++    G  V++ t++++++   e   ++ +p  p+++ + +   ++   +l ++l+
      KIR65708.1 122 VMAALVEEAVTVGDLVRLMTFRQGEANLVE---ITLPPTAPYVGQPIHAVPIPRDAALVAILR 181
                     566677777777777888888888888777...666666666666666666666666666665 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.8   0.00017      0.12      12     102 ..       2      97 ..       1     104 [. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00017
  Rossmann-like  12 svGiisaGrvGtalgaaleraghvvvgisaisaasr....eraerrlPdvpvle.ved.vaaraellllavPdaelpglvkglaatgavraGtiva 101
                     + i +aG+vG ++++ l   gh+v+ i       r      ae  l d   l  +e+  +a +++++ a  d ++  +v+ la+t+     ++va
     KIR65708.1   2 RIAIAGAGNVGRSIAQELIDNGHQVMLIERQPRMLRpdrvPAAEWVLADACELAsLEEaNVAGCDVVVAATGDDKVNLVVSLLAKTEFA-VPRVVA 96 
                    57899***********************99887765221235778888875554144414678899999*******9999999999644.345555 PP

  Rossmann-like 102 h 102
                     
     KIR65708.1  97 R 97 
                    5 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00013     0.094       2      45 ..       3      45 ..       2      90 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieaspsllfpnny.vWs 45
                   +++ GaG  g s+A++l     g +v+lie  p +l+p +    +
     KIR65708.1  3 IAIAGAGNVGRSIAQEL--IDNGHQVMLIERQPRMLRPDRVpAAE 45
                   6899*************..788999************99865333 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00028       0.2       1     113 [.       3     108 ..       3     125 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00028
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHH.HTTSSEEEE-SSGGGHHHHHHHHHHHT CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaal.lkegdlvvnlsppissldvlkaCietg 93 
                      + i GaG+vG+++a++l ++++   ++++++r+ + l+      + + +e +  da + ++ L+++ +++ d+vv ++++   + v+ + ++t 
       KIR65708.1   3 IAIAGAGNVGRSIAQELIDNGH---QVMLIERQPRMLRPD----RVPAAEWVLADACELAS-LEEAnVAGCDVVVAATGDDKVNLVVSLLAKTE 88 
                      5788****************97...8******99985544....45666666666666666.66665777788888888777777777766666 PP

                      -EEEESS-BCGCCSCHCCSH CS
  Sacchrp_dh_NADP  94 vhyvdtsiskeertnyalre 113
                       ++  ++ + ++ +n +l  
       KIR65708.1  89 FAVPRVVARVNRAENEWLFT 108
                      66655555445555555555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00025      0.18      38      72 ..       2      36 ..       1      76 [. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
                  EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHH CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlkafgmkviaydrskkke 72
                  +++i G+G++G+++a+ l   g +v+ ++r+++  
    KIR65708.1  2 RIAIAGAGNVGRSIAQELIDNGHQVMLIERQPRML 36
                  789**************************998833 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00081      0.58       1      28 [.       1      27 [.       1      36 [. 0.81
   2 ?   -0.4   0.1       2.1   1.5e+03      86      96 ..      63      73 ..      55      77 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00081
                CEEEEESTSHHHHHHHHHHHHHTTCEEE CS
     Gp_dh_N  1 vkvainGfGRIGrlvlralleekelevv 28
                +++ai G G +Gr +++ l+++   +v+
  KIR65708.1  1 MRIAIAGAGNVGRSIAQELIDNG-HQVM 27
                79*****************9664.3444 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 2.1
                HTSSEEEE-SS CS
     Gp_dh_N 86 lgvdlVvestG 96
                +g+d+Vv +tG
  KIR65708.1 63 AGCDVVVAATG 73
                699*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 1698.53
//
Query:       KIR65709.1  [L=221]
Description: potassium transporter TrkA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-25   90.0   0.1    1.8e-25   89.5   0.1    1.2  1  TrkA_N           TrkA-N domain
    3.9e-08   33.0   0.0      1e-07   31.7   0.0    1.8  1  TrkA_C           TrkA-C domain
    0.00019   21.9   0.1    0.00029   21.3   0.1    1.3  1  XdhC_C           XdhC Rossmann domain
    0.00057   19.6   1.0      0.013   15.1   1.0    2.1  1  DAO              FAD dependent oxidoreductase
    0.00088   18.9   0.0     0.0014   18.3   0.0    1.4  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
      0.002   18.1   0.1     0.0038   17.1   0.1    1.6  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.002   17.4   0.1     0.0025   17.1   0.1    1.2  1  FAD_binding_3    FAD binding domain
     0.0027   18.2   0.1      0.019   15.5   0.0    2.2  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
     0.0029   17.3   0.1     0.0046   16.6   0.1    1.4  1  ApbA             Ketopantoate reductase PanE/ApbA
     0.0039   17.4   0.0      0.011   15.9   0.0    1.8  2  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
     0.0042   16.9   1.2     0.0079   16.0   0.2    1.9  3  Rossmann-like    Rossmann-like domain
     0.0044   17.3   0.1     0.0063   16.8   0.1    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
      0.011   16.1   0.1      0.018   15.5   0.1    1.4  1  NAD_binding_7    Putative NAD(P)-binding
      0.017   15.1   0.0       0.03   14.3   0.0    1.4  1  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
      0.026   14.0   0.1      0.038   13.5   0.1    1.3  1  Epimerase        NAD dependent epimerase/dehydratase family
      0.029   14.9   0.1      0.073   13.6   0.1    1.8  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
      0.046   13.1   0.0      0.077   12.3   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.093   12.8   0.0       0.14   12.2   0.0    1.3  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
        0.1   12.6   0.5        1.1    9.2   0.4    2.7  1  Glyco_transf_4   Glycosyltransferase Family 4
       0.11   12.8   0.0       0.34   11.2   0.0    1.9  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
       0.13   11.6   0.1       0.32   10.3   0.1    1.6  2  ThiF             ThiF family


Domain annotation for each model (and alignments):
>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.1   2.1e-28   1.8e-25       1     113 [.       3     116 ..       3     119 .. 0.95

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 2.1e-28
                 EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSE.EEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEESS CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreegle.vvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraqd 98 
                 ++i+G+GrvG++la+ L+++g++v vid+d +++++l+ +++  +v g + d evL++agie+ada+ a+ + d +ni+ + la+e ++  ++ ar+ d
  KIR65709.1   3 VVIMGCGRVGSTLAQSLESRGHSVAVIDQDADAFRRLSPDFAGiTVTGAGFDGEVLRQAGIERADAFAAVSSGDNSNIISARLARETFGVSRVAARIYD 101
                 79*****************5557******************665999**************************************************** PP

                 GGGHHHHHHHTTSEE CS
      TrkA_N  99 pehaellkklgadvv 113
                 + +a+++++lg+ +v
  KIR65709.1 102 QRRAQVYERLGIPTV 116
                 ***********9887 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.2e-10     1e-07       3      68 ..     148     212 ..     146     214 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.2e-10
                 EEEEE--GGGTTSBHHHHTHHHH.S-EEEEEE-T-EEES--TT-B--TT-EEEEEEEHHHHHHHHHH CS
      TrkA_C   3 evtvpagsplvGktlkelnlrar.gvlvvairRggeliipsgdtvLeeGDvllvvgspsdlaelrel 68 
                  v+vp    ++G++l+   l++  g++v+ + R g  ++p+g+t  +eGD+++ +++++ +a ++++
  KIR65709.1 148 IVEVPVHKDWIGRPLRA--LEEAsGARVAYLIRFGIGTLPTGSTAVQEGDQVFMLVTDDIVASATSV 212
                 688888999********..*****************************************9998876 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   3.4e-07   0.00029       1      97 [.       3      94 ..       3     112 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.4e-07
                EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE-EEEE--S-HHHHHHHHHHHSSS--SEEEESS-HHHHHHHCTTS.--...... CS
      XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpreefatkerfpeadetavvvlthdhklDaealeaalrkkaayigllGSrkkaarrlerlraaglseee 97
                +vi+G g v+  la+ +++ g +v v+d++++ a    f + + +++ +   +  +D e+l++a  ++a  ++++ S  +++ + +rl+++ +  ++
  KIR65709.1  3 VVIMGCGRVGSTLAQSLESRGHSVAVIDQDAD-A----FRRLSPDFAGITVTGAGFDGEVLRQAGIERADAFAAVSSGDNSNIISARLARETFGVSR 94
                69****************************96.3....333335999*****************999999******************998765444 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.0   1.6e-05     0.013       1      32 [.       2      69 ..       2     174 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.6e-05
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSS..................................T CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdi..................................a 32
                +vvi G G +G++ A  L  rg  V++++++ +                                  +
  KIR65709.1  2 HVVIMGCGRVGSTLAQSLESRGhsVAVIDQDADafrrlspdfagitvtgagfdgevlrqagieradaF 69
                79****************99999********8844444444444444444444444444444444442 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.6e-06    0.0014       1      40 [.       1      40 [.       1      73 [. 0.89

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.6e-06
                    SEEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHC CS
  UDPG_MGDP_dh_N  1 mkisviGlGYvGlvtaavlaeighevigvDideekvdkln 40
                    m+++++G G vG + a  l ++gh v ++D d+ + + l 
      KIR65709.1  1 MHVVIMGCGRVGSTLAQSLESRGHSVAVIDQDADAFRRLS 40
                    789*****************************98877765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   4.5e-06    0.0038       1      37 [.       2      38 ..       2      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.5e-06
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealek 37
                +v ++G+G +G+ +a+ + s+g++V ++d +++a ++
  KIR65709.1  2 HVVIMGCGRVGSTLAQSLESRGHSVAVIDQDADAFRR 38
                5899***************************999876 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1     3e-06    0.0025       3      78 ..       2      83 ..       1     148 [. 0.63

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3e-06
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS....S--EEEHHHH..HHHHHTT-HHHHHHHSEECCCCEEEEEE CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp....radglnqrtm..ellrqlGledrilaegapnelmgealyn 78
                    V+I G G +G +la+ L ++G +v ++++ +++ +       + +++   +  e+lrq+G+e+  +  ++++  ++ + ++
     KIR65709.1  2 HVVIMGCGRVGSTLAQSLESRGHSVAVIDQDADAFRRLspdfAGITVTGAGFdgEVLRQAGIERADAFAAVSSGDNSNIISA 83
                   69****************************9998765434424444444444447888888887655444444333333333 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.2e-05     0.019       2      48 ..       3      46 ..       2      76 .. 0.86
   2 ?   -0.1   0.0       1.6   1.4e+03      48      71 ..     181     203 ..     165     215 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.2e-05
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.- CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg.v 48
                   + i G+G++g++la+ l ++g   h++ v+ +++ +  + l  ++  +
     KIR65709.1  3 VVIMGCGRVGSTLAQSLESRG---HSVAVI-DQDADAFRRLSPDFAgI 46
                   5688*****************...****99.99999999998776533 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.6
                    -EEECECHHHHHHH-SEEEE-S-H CS
  F420_oxidored  48 vkvtavdneeaaeeadvvvlavkp 71 
                    +++ + + ++a++e d v+  v  
     KIR65709.1 181 IGTLP-TGSTAVQEGDQVFMLVTD 203
                    55555.668999999999998865 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   5.4e-06    0.0046       1      37 [.       3      40 ..       3      81 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.4e-06
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealk 37
                ++i+G+G +Gs+la +L   g+ v +i++++  + +l+
  KIR65709.1  3 VVIMGCGRVGSTLAQSLESRGHSVAVIDQDAdAFRRLS 40
                68***************************996666654 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.3e-05     0.011       3      39 ..       4      40 ..       2      76 .. 0.88
   2 ?   -1.8   0.0       3.6     3e+03      39      66 ..     177     204 ..     167     211 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.3e-05
                   EEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH CS
  NAD_binding_2  3 gfiGlGvMGsnmalnllkagykvavynrtkekveelv 39
                    ++G G  Gs +a+ l+++g++vav++ +++++++l 
     KIR65709.1  4 VIMGCGRVGSTLAQSLESRGHSVAVIDQDADAFRRLS 40
                   578**************************99998876 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.6
                    HHTTEEE-SSHHHHHHHCSEEEE-SSSH CS
  NAD_binding_2  39 vaegakaaesieelvasldvvitmvkag 66 
                    +  g+ ++ + + +v++ d v+++v+++
     KIR65709.1 177 IRFGIGTLPTGSTAVQEGDQVFMLVTDD 204
                    5555666667777888888888888775 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   9.3e-06    0.0079      12      48 ..       2      38 ..       1      49 [. 0.88
   2 ?   -1.2   0.0       1.9   1.7e+03      17      35 ..      50      69 ..      41     111 .. 0.57
   3 ?   -2.0   0.0       3.5     3e+03      16      42 ..      72      98 ..      59     125 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.3e-06
  Rossmann-like 12 svGiisaGrvGtalgaaleraghvvvgisaisaasre 48
                   +v i++ GrvG++l+++le  gh v  i   ++a r+
     KIR65709.1  2 HVVIMGCGRVGSTLAQSLESRGHSVAVIDQDADAFRR 38
                   6889*********************999988887765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.9
  Rossmann-like 17 saGrvGtalgaa.leraghv 35
                   +aG  G +l +a +era+  
     KIR65709.1 50 GAGFDGEVLRQAgIERADAF 69
                   55555666654435555432 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.5
  Rossmann-like 16 isaGrvGtalgaaleraghvvvgisai 42
                   +s+G    +++a l+r    v  ++a 
     KIR65709.1 72 VSSGDNSNIISARLARETFGVSRVAAR 98
                   666666666777777766666666653 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   7.4e-06    0.0063       1      52 [.       3      51 ..       3      89 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.4e-06
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEE CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeai 52
                     v+i G+G+vG+ +a+ l+ +++    ++v+d++ +  ++l  + +g++++ +
       KIR65709.1  3 VVIMGCGRVGSTLAQSLESRGHS---VAVIDQDADAFRRLSPDFAGITVTGA 51
                     89******************986...*********99999877777666655 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.1   2.1e-05     0.018       9      46 ..       2      44 ..       1     108 [. 0.65

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.1e-05
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvapevkeele.....e 46
                   +v++ G G+v+ + +++l + g  v v++++  ++        
     KIR65709.1  2 HVVIMGCGRVGSTLAQSLESRGHSVAVIDQDADAFRRlspdfA 44
                   89****************************9644433445552 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.6e-05      0.03       2      38 ..       3      39 ..       2      44 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.6e-05
                    EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHH CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrlwvreeelieei 38
                    + ++G G  G++lA++l+++gh+v ++ ++++ ++++
      KIR65709.1  3 VVIMGCGRVGSTLAQSLESRGHSVAVIDQDADAFRRL 39
                    89************************99999887765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   4.4e-05     0.038       4      92 ..       6      90 ..       3     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.4e-05
                ETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHT CS
   Epimerase  4 tGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknl 92
                +G  G +Gs l++ l+++g+ v ++d++ +a+++ + +   +  + +t +    +++++ +++    +Aav++ ++s++  a+++++++
  KIR65709.1  6 MGC-GRVGSTLAQSLESRGHSVAVIDQDADAFRRLSPD---FAGITVTGAGFDGEVLRQAGIERADAFAAVSSGDNSNIISARLARETF 90
                555.99**********************8888877665...666666666655666666666666667787777777777677666655 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   8.6e-05     0.073       1      35 [.       2      36 ..       2      53 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.6e-05
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35
                +vv++G G +g  lA+ l   g++V v++      
  KIR65709.1  2 HVVIMGCGRVGSTLAQSLESRGHSVAVIDQDADAF 36
                89**************************9766555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.1e-05     0.077      38      69 ..       2      33 ..       1      48 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.1e-05
                  EEEEES-SHHHHHHHHHHHHTT-EEEEESSSH CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlkafgmkviaydrsk 69
                   v i+G+Gr+G+++a+ l++ g  v ++d+  
    KIR65709.1  2 HVVIMGCGRVGSTLAQSLESRGHSVAVIDQDA 33
                  689***********************999875 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00017      0.14      18     115 ..      14     122 ..      11     128 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00017
                 HHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH................CCHCCCHHHHHHCHCHHHH.......EEEEEEEEESS...-TTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  18 nLaralarrglrVllvDaDpqannlaileglendiep................dlkrllellealgkkkall.....lkiagvvlnrvdgeneetllke 95 
                 +La++l  rg+ V+++D D +a        l++d +                 +++r    ++a++ + + +     l    +++ rv  + ++++  +
  KIR65709.1  14 TLAQSLESRGHSVAVIDQDADAF-----RRLSPDFAGitvtgagfdgevlrqaGIER-ADAFAAVSSGDNSNiisarLARETFGVSRVAARIYDQRRAQ 106
                 69***************999943.....34445555566666668888899999999.67777777776777899999999999999999988888888 PP

                 HHHHHHHHCTS-EEEEEE-- CS
                 xxxxxxxxxxxxxxxxxxxx RF
        CbiA  96 aleelkqrygvpvlgviprd 115
                  +e+l    g+p ++ ++++
  KIR65709.1 107 VYERL----GIPTVATVRWT 122
                 88887....88888888776 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4    0.0013       1.1       5      44 ..       9      49 ..       5     137 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0013
  Glyco_transf_4  5 erhvleLaraLarrGheVtvv...tpgddgpleeev.elvvrvp 44
                    +r+  +La+ L  rGh V v+   +   d   +  +   ++ v+
      KIR65709.1  9 GRVGSTLAQSLESRGHSVAVIdqdA---DAFRRLSPdFAGITVT 49
                    666678***************5553...4433333221223333 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0004      0.34       1      30 [.       5      34 ..       5      41 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0004
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr 30
                   I G G  G+++A+ L  +g++v ++++  +
     KIR65709.1  5 IMGCGRVGSTLAQSLESRGHSVAVIDQDAD 34
                   679999********************9765 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00037      0.32      20      51 ..       2      32 ..       1      35 [. 0.89
   2 ?   -2.7   0.0       3.5     3e+03      76      99 ..     122     145 ..     120     157 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00037
                EEEEE--SHHHHHHHHHHHHHTTTEEEEEESS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 20 kvllvGaGglGsellknLalsGvgkltlvDnD 51
                +v+++G+G +Gs l++ L   G  ++ ++D+D
  KIR65709.1  2 HVVIMGCGRVGSTLAQSLESRG-HSVAVIDQD 32
                89****************9999.468899988 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.5
                 HHHHHHHHT-TTSEEEEEES-CCG CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  76 vaaealqeinpdveveavteritd 99 
                 +a + l+++ p+ +ve ++++ ++
  KIR65709.1 122 TADRMLRHLVPEGNVEIFRDPTST 145
                 788999999999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 1439.63
//
Query:       KIR65710.1  [L=690]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-27   95.4  33.1    4.6e-27   94.9  33.1    1.2  1  AA_permease_2  Amino acid permease
     0.0048   15.5  20.9       0.03   12.8   1.0    2.5  3  K_trans        K+ potassium transporter


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9  33.1   5.1e-31   4.6e-27      27     405 ..      60     459 ..      35     482 .. 0.74

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 5.1e-31
  AA_permease_2  27 sggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaasyllnalgpdlqgntwltylia 122
                    +   ++  w+ +av++++l+v++ y +  +a p+ gG+y ++    g++++  +a +++++yv+++a+++s+++++l +++ p++ +   + +lia
     KIR65710.1  60 ASAFLFSPWIALAVVVVMLTVVASYRQNVHAYPSGGGDYEVATVNLGPRAGLAVASALLVDYVLTVAVSVSSGVANLGSVV-PFVAT---HKVLIA 151
                    3333466799999************7665557***********************************************99.88744...78**** PP

  AA_permease_2 123 iaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.......stetdtffpngwpgv...llgllivlwsfdGfesaa 208
                    +  ++l++++n+rg +es+++  i ++  + +++  +i++gl+     g++          ++ +++++     v   l++++  + +++G+e+++
     KIR65710.1 152 VSAVVLLTAMNLRGLRESGTAFAIPTYGFV-IVIGGMIVTGLVRYFVLGHDLRapsagleIQAEHSVTGF-AL-VfllLRTFSSGCAALTGVEAIS 244
                    ********************9988555544.455555555555443333332233346544444433333.33.2244889999************ PP

  AA_permease_2 209 nvsee..vkk.kdvpkai....figllivlvlyllvniaflgvvpddeianlsn.lgsv....aalffeavggk..vvaiivvilialsllgaint 290
                    n +    ++k +++  ++     i++++ +++ +l  ++ l  v d e++ ls+  g+v    +a + e+v+g+  v+ ++v+ ++al+l++a+nt
     KIR65710.1 245 NGVPAfkAPKsRNAATTLlllgTIAVSMLVGIIWLARLTGLQFVEDPELQILSGpDGYVqktvTAQLGETVFGSgsVLLYVVAGMTALILFLAANT 340
                    *****66555543333332233777777777777777777777788888666653222244447888888885446******************** PP

  AA_permease_2 291 avigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphlkr..... 381
                    a+ g + +   la+d++lPr ++    + + +++i++ a+ +++l++ f     a ++ l  ++ +g+++s++l  +g++ ++ +  + +r     
     KIR65710.1 341 AFNGFPVLGSILAQDRYLPRQLHTRGDRLAFSNGIVFLAVAAIVLIVGF----QAEVTRLIQLYIVGVFVSFTLSQAGMIRHWNRHLRTERdpqar 432
                    *****************************************97666555....679************************9987755444444444 PP

  AA_permease_2 382 ...pgkilvaiigalfllfllvalffp 405
                       ++   ++++g++++  +lv+  + 
     KIR65710.1 433 rrmIRSRAINAFGMVMTAAVLVIVLIT 459
                    454322367777777777766665543 PP

>> K_trans  K+ potassium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.3       0.4   3.6e+03     411     430 ..      66      85 ..      54      90 .. 0.64
   2 !   12.6   7.3   3.9e-06     0.035      95     205 ..     110     221 ..      99     272 .. 0.80
   3 !   12.8   1.0   3.4e-06      0.03     334     439 ..     377     492 ..     373     550 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.4
     K_trans 411 GgwvplllavvlllimltWk 430
                   w++l++ vv+l++++ ++
  KIR65710.1  66 SPWIALAVVVVMLTVVASYR 85 
                 45666666666666666665 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.9e-06
     K_trans  95 aliGaalllgDgvltPaisvlsAveGlevaspsleklvvpislvilvlLFliQkfGtekigklfgpimliWflllavlGilnivkkpsvlkAl.nPlya 192
                 +l  a++ll D vlt a+sv s v  l  ++p + ++ v+i++  +vlL ++  +G ++ g++f+  +  ++++++ + ++ +v+++ + + l  P  +
  KIR65710.1 110 GLAVASALLVDYVLTVAVSVSSGVANLGSVVPFVATHKVLIAVSAVVLLTAMNLRGLRESGTAFAIPTYGFVIVIGGMIVTGLVRYFVLGHDLrAPSAG 208
                 56778999***************************9999999999999*****************9999999999988888888887766655247777 PP

     K_trans 193 iefllrnklagfl 205
                 +e  ++++++gf+
  KIR65710.1 209 LEIQAEHSVTGFA 221
                 7777777776664 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 3.4e-06
     K_trans 334 llliavilvvlvFk.sssnlaaAYGlavtltmlittlllllvlvlvwkl........klilvllv.lllfllidllflsanlkKipeGgwvplllavvl 422
                 +l++a+i+++++F+ + ++l + Y ++v ++++++   ++    +  ++        ++i + ++ ++ +++   ++++  ++K+  G+w++++ ++vl
  KIR65710.1 377 FLAVAAIVLIVGFQaEVTRLIQLYIVGVFVSFTLSQAGMIRHWNRHLRTerdpqarrRMIRSRAInAFGMVMTAAVLVIVLITKFLLGAWIAIAAMAVL 475
                 78999999*****9346899999988888777777665544443333221111111133333333033344556678888999**************** PP

     K_trans 423 llimltWkygrkkllek 439
                 +++ml  ++  ++++++
  KIR65710.1 476 YVLMLAIRRHYDRVAAE 492
                 ****9988877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       874  (0.0487478); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 4484.38
//
Query:       KIR65711.1  [L=387]
Description: anhydro-N-acetylmuramic acid kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-114  383.1   0.1   1.5e-114  383.0   0.1    1.0  1  AnmK      Anhydro-N-acetylmuramic acid kinase


Domain annotation for each model (and alignments):
>> AnmK  Anhydro-N-acetylmuramic acid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.0   0.1  8.2e-119  1.5e-114       1     365 [.       1     367 [.       1     368 [. 0.95

  Alignments for each domain:
  == domain 1  score: 383.0 bits;  conditional E-value: 8.2e-119
                 -EEEEEE--TT-SEEEEEEEEESS....SEEEEEEEEE.E--HHHHHHHHHTSS--BSHHHHHHHHHHHHHHHHHHHHHHHHHHTT--GGGEEEEEE-- CS
        AnmK   1 elyiGlmsGtslDgvdivlvdlee...akvellashlf.pipedlreklldllqggaatlkalgeldqelgllfadavnellqkqelkaeeiraigshG 95 
                 ++ +GlmsGts+Dgvd+v++++     +   + ++h+    +e+lr ++ ++l ++++t++a+ +ld++lg++fada+++ ++   l+   + a++s G
  KIR65711.1   1 MRIVGLMSGTSYDGVDVVAAEFAVdgdDLRLRPLGHVGlDHDEGLRAQIQAVLPPHPTTIEAVCRLDNRLGEVFADAAARGVE---LAGGRVDAVVSPG 96 
                 5789****************99875544455667777559***************************************9997...************* PP

                 EEEEEEGG.G..TEEEEE--HHHHHHHHSS-EEE--HHHHHHTTS-S---HHHHHHHHHS-SSS.-EEEEEESSEEEEEEE-TTS--EEEEEEESSHHH CS
        AnmK  96 qtvrhepe.gevpftlqlgdanliaektgitvvaDfRrrDvaaGGqGaPLvpafheallaaene.aravLniGGianvsvlapnaevlgfDtGPgnaLl 192
                 qtv+h+++ g+v+ tlqlg ++++a++ g+ v++D+R  DvaaGGqGaPLvpaf+ +ll+ ++   ra+Ln+GGian++v+ap+a++lg+D GP+naLl
  KIR65711.1  97 QTVFHWVDgGTVRGTLQLGAPARVAARVGVPVLSDLRAADVAAGGQGAPLVPAFDALLLGGRSGpPRAALNLGGIANLTVVAPGAPTLGYDVGPANALL 195
                 *******9889************************************************87665279******************************** PP

                 HHHHHHHHS-SS-GGGHHHHCS---HHHHHHHHTSCCHH--SS----TTTSSHHHHHHHHTTSTT-H..HHHHHHHHHHHHHHHHHHHHHH-TT--EEE CS
        AnmK 193 DawiekergkayDkdgewaasGkvnkkLLaelladpyfalpaPkstGrelFnlawlekklakapeaalpeDvqatLveltavtiadallkaqadaerll 291
                 Da+ +++ g++ D dg++aa+G+v++ LL+ lla+py+a+p PkstG+elF+  +l+ +la+  e   ++Dv+atL+elta+t+a a+ ++q+   +++
  KIR65711.1 196 DAAARRFLGRPCDLDGARAAAGRVHPGLLELLLAEPYYAAPPPKSTGKELFHAGYLDDRLAALGEPVAADDVLATLTELTARTVAAACDRHQVA--EVV 292
                 **************************************************************9876559***********************96..9** PP

                 EESGGGG-HHHHHHHHHHSTT.SEEEEGGGGTS-GGGHHHHHHHHHHHHHHTT---S-HHHH--SS-----EEE- CS
        AnmK 292 vcGGGaknpvlmarlaallpe.vevestdelgldsdavealaFawLaartlnglPgnlpsvtGakkavlLGaiyp 365
                  +GGG++n  l  rlaal ++ ++++++delg++++a+ea aFa+L++   +glPg++psvtGa++a++LG+ +p
  KIR65711.1 293 AAGGGVRNRTLWGRLAALGAGrWRLRTSDELGVPAQAKEAYAFALLGWLSWHGLPGAVPSVTGAREAAVLGSWTP 367
                 ****************986655*************************************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2904.51
//
Query:       KIR65712.1  [L=644]
Description: 1-deoxy-D-xylulose-5-phosphate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-109  366.0   0.0   1.5e-109  365.4   0.0    1.2  1  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
    2.3e-36  125.1   0.1    5.7e-36  123.8   0.1    1.7  1  Transket_pyr     Transketolase, pyrimidine binding domain
    4.4e-23   81.5   0.4    1.6e-22   79.7   0.4    2.0  1  Transketolase_C  Transketolase, C-terminal domain
    1.1e-08   35.0   1.7    1.4e-06   28.2   0.4    3.6  3  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
    7.5e-06   25.1   0.1    0.00092   18.2   0.0    2.2  2  E1_dh            Dehydrogenase E1 component
    1.1e-05   25.6   0.3    2.7e-05   24.4   0.3    1.6  1  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma
  ------ inclusion threshold ------
       0.12   11.3   1.4        1.7    7.5   0.0    2.9  2  Transketolase_N  Transketolase, thiamine diphosphate binding 


Domain annotation for each model (and alignments):
>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  365.4   0.0  5.9e-113  1.5e-109       1     273 []      14     289 ..      14     289 .. 0.98

  Alignments for each domain:
  == domain 1  score: 365.4 bits;  conditional E-value: 5.9e-113
  DXP_synthase_N   1 LekinspedlkklskeeleelaeelrefliesvsktggHlasnLgvveLtlalhyvfdtpkDklvwDvgHqaYvhKiltgRkdkfktlrqkgGls 95 
                     L +++ p+d+k++++e+l+ la+e+r+fli +vs+tggH+++nLgvveLtla+h+vfd+p+D+l++D+gHqaYvhKiltgR+d f++lrq+gGls
      KIR65712.1  14 LATVRGPQDVKRMTAEQLDILAAEIRDFLIAKVSRTGGHVGPNLGVVELTLAMHRVFDSPRDRLLFDTGHQAYVHKILTGRQDGFDKLRQRGGLS 108
                     678999***************************************************************************************** PP

  DXP_synthase_N  96 gfpkrsEseyDafeagHsstsisaalGlavardlkgekkkvvaviGDgaltgGmafealnnigelkkkllvilNdNemsisknvGalskylskll 190
                     g+p+++Ese+D +e++H+st++s+a Gla+a  l+ge+++vvav+GDgaltgGm++ealnni+++ + l++++NdN +s+++++G+l+++ls+l+
      KIR65712.1 109 GYPSQAESEHDLIENSHASTALSYADGLAKAYALRGESRSVVAVVGDGALTGGMCWEALNNIATSGNPLVIVVNDNGRSYAPTIGGLADHLSSLR 203
                     *********************************************************************************************** PP

  DXP_synthase_N 191 sskayeklkkevkkllk...kigkklaelakklkeslkellvpgtlfeelgfkYlGpidGhdleelikvleevkklkgpvllhvvt 273
                      ++ yek+ ++vk++l     +g++++e+++ +k+ +k++++p+++fe+lg+kY+Gp+dGhdl++++++l+ +k++ gpv++h vt
      KIR65712.1 204 LNPGYEKVLDTVKDALGstpLVGRPMYEVLHAVKKGIKDAVAPQAMFEDLGIKYVGPVDGHDLAAVESALRAAKHFGGPVIVHAVT 289
                     ****************646566*************************************************************997 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8   0.1   2.2e-39   5.7e-36       3     173 ..     326     486 ..     324     490 .. 0.97

  Alignments for each domain:
  == domain 1  score: 123.8 bits;  conditional E-value: 2.2e-39
                   EEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHHGGHHHHHCH CS
  Transket_pyr   3 iawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqiyadqairsg 99 
                   ++w+ ++a+ l +++++ p+vv+i+a++a+ t+ +  + +h++   rv+d+gi+Eq++++ a+G+al g  l++v+a +++F+n    +a++++  +
    KIR65712.1 326 VKWTHVFADELVAIADARPDVVGITAAMAEPTGIAKLARKHPD---RVYDVGIAEQHAATSAAGLALGG--LHPVVAVYATFLN----RAFDQVLLD 413
                   78*****************************************...***********************..*************....********* PP

                   HHHHT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SS CS
  Transket_pyr 100 eakgklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpks 173
                   +a ++l+v+ v++r++i +g dGp+h ++++++++  +pgl++++P d+a +++ lr+ai+ + ++P+v+r+p +
    KIR65712.1 414 VAMHRLPVTfVLDRAGI-TGPDGPSHYGIWDMSVFGVVPGLRIAAPRDAATLREELREAIAVD-DGPTVVRFPTG 486
                   *****************.*******************************************86.6*******976 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.4   6.4e-26   1.6e-22       7     124 .]     507     621 ..     501     621 .. 0.95

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 6.4e-26
                      ETTSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSSEEEEEE CS
  Transketolase_C   7 regkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdgldapvkrvg 100
                       +  dv+lva+Gs  +  +e+a++ +++g++++Vvd+r+v+p+  e+++ +++ ++ +v+ve++v+ gG+g+++a+a+ +   +++ +p +++g
       KIR65712.1 507 ADRADVLLVAVGSFGHLGMEVAARVAEQGYGVTVVDPRWVRPVPAELVE-LAAGHRLVVTVEDGVRVGGVGDALAQAMRD---ADVRVPLRDLG 596
                      5689********************************************7.******************************...*********** PP

                      E-SS.SSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C 101 gpdv.iepgsaeelekafgldaeki 124
                      +p    ++g+++++++ +gl+a+++
       KIR65712.1 597 VPADwHPHGTRAQILADLGLTAQDV 621
                      **767****************9986 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.4   5.4e-10   1.4e-06      27     152 ..     127     286 ..     110     287 .. 0.82
   2 ?    2.3   0.0     0.051   1.3e+02     122     152 ..     449     482 ..     444     483 .. 0.74
   3 ?   -2.3   0.0       1.4   3.5e+03      97     101 ..     537     541 ..     512     586 .. 0.55

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 5.4e-10
                   TS-TTTHHHHHHHHHHHSTTSEEEEEEEHHH..HHHTGGGHHHHHHTT-SEEEEEEE-.SBCCCHHHH.........HHHHTCCTTTTSBB...... CS
  TPP_enzyme_C  27 lgtmGyglpaAiGaklakpdrevvaivGDGg..flmilqelatavrrnlpitvvvlnN.egygmtggq.........qepfggkrksgpagk..... 106
                    +++ y+ + A + +l  ++r vva+vGDG+    m+ ++l +++  + p+++vv +N ++y+ t g           +p ++k   ++++      
    KIR65712.1 127 STALSYADGLAKAYALRGESRSVVAVVGDGAltGGMCWEALNNIATSGNPLVIVVNDNgRSYAPTIGGladhlsslrLNPGYEKVLDTVKDAlgstp 223
                   455555555555555555679*********96557889********************65677665554888888887788887777777669**** PP

                   ................BS----HHHHHHHTTSE.EEEESSH.HHHHHHHHHHHHCSSSEEEEE CS
  TPP_enzyme_C 107 ................dlkpvdfaklaealGak.garvekadveeleealkealekkgpalie 152
                                   +++ v + ++ e lG+k +  v+ +d++ +e al++a + +gp++++
    KIR65712.1 224 lvgrpmyevlhavkkgIKDAVAPQAMFEDLGIKyVGPVDGHDLAAVESALRAAKHFGGPVIVH 286
                   **************98899**************66699***********************98 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.051
                   SE.EE.EESSH.HHHHHHHHHHHH.CSSSEEEEE CS
  TPP_enzyme_C 122 ak.ga.rvekadveeleealkeal.ekkgpalie 152
                   +  g+    ++d + l+e l+ea+   +gp+++ 
    KIR65712.1 449 VVpGLrIAAPRDAATLREELREAIaVDDGPTVVR 482
                   555553334667899*********87889**995 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.4
                   CCTTT CS
  TPP_enzyme_C  97 gkrks 101
                   g + +
    KIR65712.1 537 GVTVV 541
                   22222 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.6e-07   0.00092      96     162 ..     119     185 ..      78     191 .. 0.80
   2 !    4.5   0.0    0.0053        14     192     224 ..     261     289 ..     253     303 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.6e-07
                 BEEE-SSTTTHHHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEES CS
       E1_dh  96 ilggngivgaqvplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpvifvveNNk 162
                  l  n+  ++  + + G+a a   +g+ + +++++GDgA   G  +ealn  a+ + p + vv+ N+
  KIR65712.1 119 DLIENSHASTALSYADGLAKAYALRGESRSVVAVVGDGALTGGMCWEALNNIATSGNPLVIVVNDNG 185
                 3445666666668999***********************999*********9*********999996 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0053
                 EETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE CS
       E1_dh 192 VdgnDplavyeAvkfAaeraregkgpllielvt 224
                 Vdg D  av +A ++A+    ++ gp+++ +vt
  KIR65712.1 261 VDGHDLAAVESALRAAK----HFGGPVIVHAVT 289
                 9*********9999986....567888887776 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.3   1.1e-08   2.7e-05       1      68 [.     510     576 ..     510     592 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.1e-08
                 -SEEEEE-STHHHHHHHHHHHHHHTT--EEEEEES--BS--HHHHHHHSTT-SEEEEEE-S--TT-G- CS
     PFOR_II   1 AevvivamGsvagtaksavdelReegikvGllrlrtlrPFPeeelkellkkvkkvvvldrnisfgseG 68 
                 A+v++va+Gs      +++ ++ e+g+ v ++ +r++rP P+e ++ l+++ + vv+++  + +g  G
  KIR65712.1 510 ADVLLVAVGSFGHLGMEVAARVAEQGYGVTVVDPRWVRPVPAELVE-LAAGHRLVVTVEDGVRVGGVG 576
                 9****************************************98665.56799******9999877664 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.3      0.05   1.3e+02     146     171 ..     148     173 ..      34     189 .. 0.61
   2 ?    7.5   0.0   0.00067       1.7     202     268 ..     249     315 ..     236     367 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.05
                      -EEEEEEHHHHHSHHHHHHHHHHHHT CS
  Transketolase_N 146 ytyvilgDgclmeGvsseasslagtl 171
                       + +++gDg l  G+  ea +  +t 
       KIR65712.1 148 SVVAVVGDGALTGGMCWEALNNIATS 173
                      34566777777777777776655555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00067
                      HHHHTT-EEEEETTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTS.TTTTTSGGGTSS---HHHH CS
  Transketolase_N 202 rfeaygWhvievedgedveaikaaieeakaekdkPsliklrtviGygs.pakagtedvhGapLgedev 268
                       fe  g + +   dg+d++a+++a+++ak+    P +++  t  Gyg  pa+++++d    p g+ +v
       KIR65712.1 249 MFEDLGIKYVGPVDGHDLAAVESALRAAKHF-GGPVIVHAVTRKGYGYrPAEEDEADCLHGPGGAFDV 315
                      5666777777779****************99.99************9537777777764445565555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 5010.83
//
Query:       KIR65713.1  [L=396]
Description: hypothetical protein TK50_10210 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2995.43
//
Query:       KIR65714.1  [L=639]
Description: hypothetical protein TK50_10215 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
        1.1    8.5   3.3       0.99    8.6   0.7    2.1  2  Peptidase_U4  Sporulation factor SpoIIGA


Domain annotation for each model (and alignments):
>> Peptidase_U4  Sporulation factor SpoIIGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2      0.02   3.6e+02      32      71 ..     185     224 ..     140     240 .. 0.48
   2 ?    8.6   0.7   5.5e-05      0.99      21     128 ..     224     377 ..     211     397 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.02
  Peptidase_U4  32 klrlllaAllGalyvvlvlflpklesillsillkilvsll 71 
                    +r  laA++G+ +  +   + + +++  +i++++l++++
    KIR65714.1 185 VVRNPLAAAVGGWFCGFSPAMLSHANWHPNIISQFLLPFI 224
                   2233333333333322222222233344444444444443 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 5.5e-05
  Peptidase_U4  21 ltakllklkikklrlllaAllGalyvvlvlflpklesillsillkilvsllmvliafgpkslkeflkalllfylvsfllgGilfalsyll....... 110
                   ++ ++l ++ +k+ +  +All+ l  ++  f++  e+ill +++ + v l+ vl+  +p  ++  ++ l++ ++v+ +l+G l+a   ++       
    KIR65714.1 224 IVWRVLVITRSKRPVRDGALLALLV-TVQAFIN--EEILLFTAMACGVFLIAVLV-QRPGLWSSAWRPLGVAVAVCTVLAGSLLAYPLYVqfagpma 316
                   5555555555555555556655555.7777884..55888888888888888888.79999********************9998877555555555 PP

  Peptidase_U4 111 ....lkskn..........................................llvlllgalvayl 128
                           +                                          +++ l+++++++ 
    KIR65714.1 317 yhglS---DavrdygndiaaffapgsptlggneranvnlapnyseenaflgWSLALIAVGIVLW 377
                   54440...04444444555555555555555556666667777777777766666555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 4766.10
//
Query:       KIR65715.1  [L=604]
Description: hypothetical protein TK50_10220 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
        0.1   12.3   0.0       0.19   11.4   0.0    1.3  1  IspD          2-C-methyl-D-erythritol 4-phosphate cytidylyltr
        2.4    7.8  19.0       0.12   12.0   3.3    2.8  3  CPP1-like     Protein CHAPERONE-LIKE PROTEIN OF POR1-like


Domain annotation for each model (and alignments):
>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.1e-05      0.19      43      90 ..     539     586 ..     529     596 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.1e-05
                 TEEEEEEEE-GGGHHHHHHHHGGCCEEEEE--SSHHHHHHHHHHTTSS CS
        IspD  43 avdkivvvvseddteefeqllldksiqlvaGGdeRaesVlnglkaleg 90 
                 + +++ vv ++d+++++++l   + ++lv+GG +R e+V ++++al g
  KIR65715.1 539 ETGEVPVVTDADRRQAVADLRHWRAAVLVQGGLHRGEAVRRTVDALVG 586
                 5678999************************************99976 PP

>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   4.8    0.0053        48      85     165 ..      87     172 ..      46     191 .. 0.79
   2 ?   12.0   3.3   1.3e-05      0.12      89     160 ..     191     266 ..     178     277 .. 0.87
   3 ?   -1.9   0.1      0.24   2.1e+03     122     155 ..     328     361 ..     311     364 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0053
   CPP1-like  85 qesldtPssedlliraavflv...lavltlvapaes..vpalllalglgasiyflnrKekklgravlltlvgLvvGlllGsllasl 165
                 +++l++P++ +l+ +++v ++   la +tl++++++   +a++++l+  a+ + +   ++ +g  v+ +++gLv+G++ G + +  
  KIR65715.1  87 SAALNAPDGVNLMANTSVLGLgvpLAPVTLLFGTQAafLVAVVVSLAGTATAWYVLLARRLVGSRVAAAVGGLVCGFAPGMVAQAG 172
                 5679999999999999887654558999999999998888888888777777776667778899999**********999876655 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.3e-05
   CPP1-like  89 dtPssedlliraavflvlavltlvapaesvpalllalglgasiyflnrKek..klgravl..ltlvgLvvGlllGs 160
                  +P ++ + + +++ ++l++  +++++e  + l+la g++a  y l ++    +l  a+l  l++++Lv+G+ll+ 
  KIR65715.1 191 FRPGTDRVRRHGVALGLLVAYQVFVGEELLVFLALAAGVFAVAYALADRAAarRLAPALLgrLGVGALVAGALLAY 266
                 56888888899999999*******************************9865599999976689999999999875 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.24
   CPP1-like 122 llalglgasiyflnrKekklgravlltlvgLvvG 155
                 ll+l++++ +++ +r   + + av+l  +++++G
  KIR65715.1 328 LLVLAVVVVVWLWRRPLVRALAAVGLLAALFSLG 361
                 4667777777777777777777776666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4172.00
//
Query:       KIR65716.1  [L=437]
Description: hypothetical protein TK50_10230 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-08   32.9  18.1    1.5e-05   24.7   3.5    3.5  3  PQQ_2     PQQ-like domain
      0.001   18.9   0.3       0.73    9.9   0.0    4.2  4  PQQ       PQQ enzyme repeat
  ------ inclusion threshold ------
       0.38   11.3   0.1       0.38   11.3   0.1    6.5  6  PQQ_3     PQQ-like domain


Domain annotation for each model (and alignments):
>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   3.5   2.4e-09   1.5e-05      35     147 ..      67     186 ..      43     191 .. 0.73
   2 !   20.6   6.7   4.5e-08   0.00027      76     147 ..     120     186 ..     102     280 .. 0.64
   3 !   14.1   1.2   4.2e-06     0.025      40      99 ..     297     364 ..     275     405 .. 0.65

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.4e-09
       PQQ_2  35 sggtlfva......tgggrlvaldaatG.....kvlWettl..egpvvgaplvaegrvvvva..sdg.qlialdaedGkrlWstqqrseepaelrssas 117
                  gg+++v       +g+++++a  +  G     + lW  ++  +g++vg     +g +++v+  +dg + ia+da++G+r W+ q            ++
  KIR65716.1  67 LGGRVYVLapevgsGGSREVTAHGTPAGagagiRTLWHMAVasTGRLVGV-QERDGVALLVDyqPDGvETIAVDAATGERRWQ-QAGY---------PA 154
                 55555555444444455555555555552222235677777667777777.66777778888888999***************.7777.........56 PP

       PQQ_2 118 pavagdtvvvges..sgklvaldpkdGkvlWe 147
                  a +g+ +++g+   +g+l  +dp++G+v+W+
  KIR65716.1 155 LAAGGGLLLLGDDveRGELRSVDPTSGRVRWS 186
                 667799999999899****************8 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 4.5e-08
       PQQ_2  76 egrvvvva..sdg.qlialdaedGkrlWstqqrseepaelrssaspavagdtvvvges..sgklvaldpkdGkvlWe 147
                 +g +++v+  +dg + ia+da++G+r W+ q            ++ a +g+ +++g+   +g+l  +dp++G+v+W+
  KIR65716.1 120 DGVALLVDyqPDGvETIAVDAATGERRWQ-QAGY---------PALAAGGGLLLLGDDveRGELRSVDPTSGRVRWS 186
                 44445555555666677777777777777.5555.........3444456666666666677777777777777775 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 4.2e-06
       PQQ_2  40 fvatgggrlvaldaatGkvlWettlegpvvgaplvaegrvvvvasdg......qlialdaedGkr.....l 99 
                 +va +g  l++ld+atG v+W++   ++      v ++r+++ a+d+      +l  lda++G++      
  KIR65716.1 297 AVAYRGSGLSGLDPATGGVRWTNPRWQT---VVAVRGDRLLAIADDQaggttsHLGVLDAATGREvadlgR 364
                 4556788888888888888888884444...4456888888888666555555555588888887444444 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00012      0.73      13      25 ..     136     148 ..     134     150 .. 0.89
   2 ?    1.8   0.0     0.044   2.6e+02      10      26 ..     171     187 ..     168     188 .. 0.77
   3 ?   -1.2   0.0      0.38   2.3e+03      12      25 ..     305     318 ..     298     318 .. 0.82
   4 ?    0.9   0.0     0.086   5.2e+02      15      23 ..     351     359 ..     347     359 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00012
                 EEEETTTCCEEEE CS
         PQQ  13 yAlDadTGkvlWr 25 
                  A+Da+TG+ +W+
  KIR65716.1 136 IAVDAATGERRWQ 148
                 69**********9 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.044
                 SEEEEEETTTCCEEEEE CS
         PQQ  10 GylyAlDadTGkvlWrf 26 
                 G l+ +D ++G+v+W++
  KIR65716.1 171 GELRSVDPTSGRVRWSV 187
                 66777887789999987 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.38
                 EEEEETTTCCEEEE CS
         PQQ  12 lyAlDadTGkvlWr 25 
                 l  lD +TG v+W+
  KIR65716.1 305 LSGLDPATGGVRWT 318
                 5668889******5 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.086
                 EETTTCCEE CS
         PQQ  15 lDadTGkvl 23 
                 lDa+TG+++
  KIR65716.1 351 LDAATGREV 359
                 9*****986 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.7      0.01        62       9      28 ..      56      75 ..      53      83 .. 0.86
   2 ?   -1.9   0.1      0.92   5.5e+03      17      26 ..      99     115 ..      85     128 .. 0.58
   3 ?   11.3   0.1   6.4e-05      0.38       1      40 []     143     180 ..     143     180 .. 0.89
   4 ?    0.9   0.1      0.12   6.9e+02       1      10 [.     181     190 ..     181     217 .. 0.72
   5 ?   -0.7   3.6      0.38   2.2e+03       1       1 [.     313     313 ..     275     355 .. 0.49
   6 ?   -2.9   0.2       1.9   1.1e+04      11      26 ..     376     391 ..     371     392 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.01
       PQQ_3  9 lpgpvnsspavdgglvyvgt 28
                l+g+++s+++v gg+vyv +
  KIR65716.1 56 LGGQLGSQVVVLGGRVYVLA 75
                689999***********965 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.92
       PQQ_3  17 p.......avdgglvyv 26 
                         +++ g+++ 
  KIR65716.1  99 IrtlwhmaVASTGRLVG 115
                 35556665555666655 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 6.4e-05
       PQQ_3   1 GevlWsvqlpgpvnsspavdgglvyvgtg..dGtlyAlDaet 40 
                 Ge++W++  ++p+   +a++ggl+  g++   G l+++D+++
  KIR65716.1 143 GERRWQQA-GYPA---LAAGGGLLLLGDDveRGELRSVDPTS 180
                 89999987.5566...8**********************975 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.12
       PQQ_3   1 GevlWsvqlp 10 
                 G+v+Wsv+ +
  KIR65716.1 181 GRVRWSVPGH 190
                 99****9754 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 0.38
       PQQ_3   1 G 1  
                 G
  KIR65716.1 313 G 313
                 2 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 1.9
       PQQ_3  11 gpvnsspavdgglvyv 26 
                  ++++ p  dgg ++v
  KIR65716.1 376 PYYGTRPDRDGGGLVV 391
                 3444666666654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2997.01
//
Query:       KIR65717.1  [L=222]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-24   85.2   0.0      5e-24   84.6   0.0    1.3  1  Response_reg  Response regulator receiver domain
    3.4e-20   71.9   0.0      6e-20   71.1   0.0    1.4  1  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.0   5.6e-28     5e-24       1     112 []       3     113 ..       3     113 .. 0.99

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 5.6e-28
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vl+v+D++ +++++++ l+++g+  v++a dg++  e++   ++d+++lD ++pg++G +++ e+ +    ++v++lta ++ +d+ve+l++gadd+
    KIR65717.1   3 VLVVEDERNLADAIARGLRKRGM-AVDVAYDGDSGHEMAFVTRYDVVVLDRDLPGIHGDQICAELAASGTLTRVLMLTASGTVADRVEGLQLGADDY 98 
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   l Kpf+ +eL+++++
    KIR65717.1  99 LPKPFAFDELVARVQ 113
                   ***********9985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   6.7e-24     6e-20       2      76 ..     146     216 ..     145     217 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 6.7e-24
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYr 76 
                    v+lt+kef +L+ Ll+ +g vvs eeLle+vw+ + d+ +  v+v + +LR+kL+d    p lIetv g GYr
   KIR65717.1 146 AAVDLTNKEFGVLAELLKARGAVVSSEELLERVWDANTDPFTTIVRVTVMTLRRKLGD----PPLIETVVGAGYR 216
                  5799******************************************************....67**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1832.68
//
Query:       KIR65718.1  [L=127]
Description: glyoxalase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-29  101.8   0.5    3.9e-29  101.6   0.5    1.0  1  Glyoxalase_6  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.5   2.2e-33   3.9e-29       2     107 .]       8     117 ..       7     117 .. 0.92

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 2.2e-33
  Glyoxalase_6   2 vvldaadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpe..paknrvHldlavedl..daevarlvalGArvlreprdgthgr 94 
                   + +d+ d  ala+Fwa+++g+ +++++    dpe++ + ++d+ t+lf +vpe  ++knrvHl l+ +d+  daev+rl+alGA++++++r +++ +
    KIR65718.1   8 ISIDCHDTYALAGFWAQVFGTGRQPDD-HPGDPEAMVL-TADGETVLFLQVPEgkTVKNRVHLCLEPADRsrDAEVERLLALGATQVDDQRRPDGTG 102
                   789************************.6777777776.88999*********************99666448*******************99888 PP

  Glyoxalase_6  95 ..vlaDPeGneFcvv 107
                     vlaDPeGneFcv+
    KIR65718.1 103 wvVLADPEGNEFCVL 117
                   9************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 934.99
//
Query:       KIR65719.1  [L=237]
Description: hypothetical protein TK50_10255 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.089   13.0   0.0       0.17   12.1   0.0    1.4  1  DUF5056   Domain of unknown function (DUF5056)
       0.09   12.8   0.7       0.24   11.4   0.0    1.9  2  DUF4366   Domain of unknown function (DUF4366)


Domain annotation for each model (and alignments):
>> DUF5056  Domain of unknown function (DUF5056)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.9e-05      0.17      41      78 ..      51      88 ..      41      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.9e-05
     DUF5056 41 tavcavlavvLFvvldGlelllevlrevftsaiqslas 78
                ++v +vlavvL ++l+G ++++ ++++ + +++  +++
  KIR65719.1 51 KIVLIVLAVVLVLCLGGAAITWFAVKDEVGDVVDATNT 88
                57899**********************99999988774 PP

>> DUF4366  Domain of unknown function (DUF4366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.7e-05      0.24     100     141 ..      32      76 ..      15      80 .. 0.63
   2 ?   -0.9   0.5      0.17   1.5e+03      54      86 ..     102     134 ..     100     223 .. 0.48

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.7e-05
     DUF4366 100 ekeaepee...peeepekksnnglllvvlavaligggaayyfkvl 141
                 ++  ep++   p +++++++   ++l+v++v+ +gg+a+  f v+
  KIR65719.1  32 QPYGEPSAaplPPKKSKAGKIVLIVLAVVLVLCLGGAAITWFAVK 76 
                 444444443323333333334777788888888999999888765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.17
     DUF4366  54 VdeaDLlalleedeeaakeeeevcactekcaag 86 
                 V++  L++l +e  ++ k + ++ + t+    g
  KIR65719.1 102 VTDPELTKLSDELVADMKSTVQNETSTAGAFYG 134
                 555556666654444444333333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1793.85
//
Query:       KIR65720.1  [L=689]
Description: 3-hydroxyacyl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-57  194.7   0.5      2e-57  194.0   0.5    1.3  1  3HCDH_N   3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
    3.7e-22   78.9   0.0    8.6e-22   77.7   0.0    1.5  1  ECH_1     Enoyl-CoA hydratase/isomerase
    1.4e-15   57.6   0.0    2.8e-15   56.7   0.0    1.5  1  ECH_2     Enoyl-CoA hydratase/isomerase
    7.3e-12   45.7   0.0    4.9e-09   36.7   0.0    2.6  2  3HCDH     3-hydroxyacyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.0   0.5   4.4e-61     2e-57       1     179 [.     326     505 ..     326     506 .. 0.99

  Alignments for each domain:
  == domain 1  score: 194.0 bits;  conditional E-value: 4.4e-61
                 EEEEE--SCCHHHHHHHHHHT.T-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHHHHHHH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasa.gleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlviEavvEnlelKrkvfa 98 
                 kv+++GaG+m +++a +fa++  ++Vv++d ++ +++k+   +++++ek+v+kg++++ +++++   +s + d ++++dad+viEav+E+l++K++v+a
  KIR65720.1 326 KVGIVGAGLMASQLALLFARRlQVPVVMTDLDQGRVDKGVGYVHTQIEKAVSKGRMDKGTAAKLYGLVSGSVDKAAFADADFVIEAVFEDLDVKKQVWA 424
                 79*******************9***************************************************************************** PP

                 HHHCCS-TTSEEEE--SSS-HHHHCCCSSSGGGEEEEEE-SSTTT--EEEEEE-TT--HHHHHHHHHHHHHTT-EEEEECS CS
     3HCDH_N  99 elekiakpdailasnTSslsiselaealkrperviglHFfnPpplmkLvEvvrgekTseetvatvvelakkigktpvvvkd 179
                 eleki++p+a+la+nTSsls++++a++l++perv+g+HFfnP+ +++L+E+vrge+T+++t+at++++ k+++k  v v d
  KIR65720.1 425 ELEKIVSPEAVLATNTSSLSVTAMAAELEHPERVVGFHFFNPVAVLPLLEIVRGERTDDATLATAFAVGKQLKKSSVLVSD 505
                 *****************************************************************************9987 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   1.9e-25   8.6e-22      16     195 ..      41     226 ..      28     234 .. 0.83

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 1.9e-25
                 CTTEE-HHHHHHHHHHHHH.HHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHCHHHH.HHHCCHHHHHHHHHHSSSEEEEEE-SEEETHHHHHHHHSSE CS
       ECH_1  16 avNalsaelltEliqalek.leddksvravvLtGgdkaFaaGadlkemaeeekakqa.llkeevlelwtklytvpkpviaavnGaaigGGlelalacDi 112
                 + N++ +  lt l +a+   l  d+++  v +tG + +F+ Gad++ + +   ++qa ++       + +l ++ +p+ a vnGaa+gGGlelal c +
  KIR65720.1  41 KPNSFGPGGLTSLDEAITAaLAADPAF--VAVTGKPYIFCVGADITSLPQLADREQAlEIGRLGHRVFARLKDSTVPTFAFVNGAAMGGGLELALHCHY 137
                 567777777777777775414566655..456******************98855551667778999******************************** PP

                 EEEETTTE.EE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHH.....HT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHHHSCH CS
       ECH_1 113 viaadnas.fglnelklGlipgaggtqilarkvGkskAeeill.....lgkkisaqealkvGlvdkvvpeeqlleealelaeklaeksp 195
                 + ++  as  +l+e+ lGlipg ggtq l+  +G  +A +++l       k ++++ a++ G+ d  +  +++le  l++a+ +++  +
  KIR65720.1 138 RTLSGGASaLALPEVSLGLIPGWGGTQLLPHLIGIPAATQVILqnplmQNKMLKPKQAAELGIADVLLEPADFLERSLQWAAGVVRGEI 226
                 ****99998*****************************99976222114566789*************99**********998886655 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   6.3e-19   2.8e-15      35     176 ..      64     209 ..      43     282 .. 0.78

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 6.3e-19
                 T-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEETHHHHHHTTSSEEEE-T.T-EEE--GGGGT---- CS
       ECH_2  35 evklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivmGgGvGlsvhgsfrvvte.rtvfAmPEtaIGlfPD 132
                 + ++v ++g ++  fC G D+ +l + a+++++   e+ r  +++ +++++ + p+ a+++G +mGgG+ l++h+++r  +   + +A PE+++Gl+P 
  KIR65720.1  64 DPAFVAVTG-KPYIFCVGADITSLPQLADREQAL--EIGRLGHRVFARLKDSTVPTFAFVNGAAMGGGLELALHCHYRTLSGgASALALPEVSLGLIPG 159
                 446889999.559**************9998755..7*****************************************88752679************* PP

                 TTHHHHHHCSST.THHHHHH.....HH---B-HHHHHHTTS--EE--GGG CS
       ECH_2 133 vGgsyfLsrlpg.elGlyla.....lTGarlkgadalaaglathyvpsek 176
                  Gg+ +L++l g   ++ +      +  + lk ++a ++g+a+ +++ ++
  KIR65720.1 160 WGGTQLLPHLIGiPAATQVIlqnplMQNKMLKPKQAAELGIADVLLEPAD 209
                 *********96543444333012224567778888888888888877665 PP

>> 3HCDH  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.1e-12   4.9e-09       2      84 ..     509     588 ..     509     591 .. 0.94
   2 !    6.1   0.0    0.0039        17      10      41 ..     624     656 ..     619     671 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.1e-12
                 TTHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHTTTHGGHH-HHHHHHHHTT CS
       3HCDH   2 FvvnRvlapllneavrlveegvaspediDaamrlglGlpmGpfelldlvgldvakkilevlaeelgerayapsplleklveag 84 
                 FvvnR+l ++l  ++++v++g  +p d+ +a+ + lGlpm p++ll lvg  va+++  +l+ ++++r +a s+ l++++e+g
  KIR65720.1 509 FVVNRLLTRFLGTVFAAVDAG--TPLDVANAALDPLGLPMRPLALLQLVGPAVAYHVGGTLHGAFPDR-FAVSENLRRIAESG 588
                 9********************..********************************************9.55578999988887 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0039
                 HHHHHHHHHHHTTS.S-HHHHHHHHHHHHHHSS CS
       3HCDH  10 pllneavrlveegv.aspediDaamrlglGlpm 41 
                 +l +e+  +++egv a+++diD ++ lg+G+p 
  KIR65720.1 624 ALAQEVRLMLDEGVvAEAQDIDLCLILGAGWPF 656
                 67789999*****6379**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4576.83
//
Query:       KIR65721.1  [L=397]
Description: acetyl-CoA acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-58  198.6   0.1    1.5e-58  198.2   0.1    1.1  1  Thiolase_N     Thiolase, N-terminal domain
    4.3e-36  123.3   2.6    4.4e-36  123.2   0.0    2.2  3  Thiolase_C     Thiolase, C-terminal domain
  ------ inclusion threshold ------
       0.04   13.5   2.8      0.069   12.7   2.4    1.6  1  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.2   0.1   2.5e-62   1.5e-58       1     260 []       8     258 ..       8     258 .. 0.94

  Alignments for each domain:
  == domain 1  score: 198.2 bits;  conditional E-value: 2.5e-62
                 EEEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHT.S-GGGCCEEEEEHSSCT.TSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigkfggslkdlsaeeLlaealkallekag.vdpeevdevivGnvlqa.gegqniarqaalkagipeevpavtvnkvcsSglkavalaaq 97 
                 vv v+++rtp+gk gg++++++a++L  + +++ll +++ ++pe v+ev+++   q   +g +i r aal ag+p++vp  +++++c+ +++av+++a+
  KIR65721.1   8 VVFVDGVRTPFGKAGGMYANTRADDLVIRCIRELLRRNPqLPPERVEEVAIAATTQIgDQGLTIGRTAALLAGLPKTVPGFAIDRMCAGAMTAVTTVAG 106
                 799************************************9***************99789999************************************ PP

                 HHHTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHH.T--HHHHHHHHHHHHHHHHHHHHTTTTTT CS
  Thiolase_N  98 siaageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakky.kisReeqdefAvkshqkaaaaqkagkFkd 195
                  ia+g++dv++agGvE+m++ p+ e +d + ++   +ek++d   p+          mG taenl ++   i++e+ d+fA++s+qk a+a ++gk++ 
  KIR65721.1 107 GIAMGAYDVAIAGGVEHMGRHPMGEGVDPNPRI--VAEKLVD---PS-------ALVMGATAENLHDRVpHITKERTDAFALASQQKTAKAYANGKLQG 193
                 *************************98875554..4444444...44.......457*********99758**************************** PP

                 TBE-EEEEESSSE.EEE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEHH CS
  Thiolase_N 196 eivPvkvkgkkgk.ktvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmses 260
                 + vP+ + + +g     + dea+r  +++ekLa+lk+ F+ +G vtAgna +++DGa a ll++e+
  KIR65721.1 194 DLVPMAIRDDEGGwGLATVDEAPRD-TSLEKLATLKTPFRPHGKVTAGNAAGLNDGATASLLAAED 258
                 *************99********99.************************************9885 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.23   1.4e+03      82     119 ..      64     103 ..      53     106 .. 0.69
   2 ?   -2.8   0.6      0.78   4.7e+03      67      83 ..     113     130 ..      89     132 .. 0.59
   3 !  123.2   0.0   7.3e-40   4.4e-36       4     122 ..     268     389 ..     265     390 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.23
                 TTTHHHHH..HHHHHHHHHHCTTSEEEEEEEETTTEEEEE CS
  Thiolase_C  82 lGasGaRi..vvtllselkkeggklgvaalCigggqgval 119
                 +G  G  i  +++ll  l k    +++  +C+g+ ++v++
  KIR65721.1  64 IGDQGLTIgrTAALLAGLPKTVPGFAIDRMCAGAMTAVTT 103
                 5555555522455777888888899999999998887766 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.78
                 GGBSTT--HHHH-.B-TT CS
  Thiolase_C  67 ekvNvnGGaialG.HPlG 83 
                   v + GG   +G HP+G
  KIR65721.1 113 YDVAIAGGVEHMGrHPMG 130
                 345566666666666666 PP

  == domain 3  score: 123.2 bits;  conditional E-value: 7.3e-40
                 SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--G..GGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHHC CS
  Thiolase_C   4 lakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldl..ekvNvnGGaialGHPlGasGaRivvtllselkke 100
                   +++sy  vgv+pe +g+gP++ ++k+l  agl+++didlfE+nEAFa+q+La + +++++    +vN +GGaia+GHPl  sG+R++++l++++ ++
  KIR65721.1 268 AMRLVSYGFVGVEPEVMGVGPIPSTEKALRIAGLSIDDIDLFELNEAFAVQVLAFLDHFGIADddPRVNPWGGAIAIGHPLASSGVRLMTQLARQFAEH 366
                 56899*******************************************************9763369****************************9886 PP

                 .TTSEEEEEEEETTTEEEEEEEE CS
  Thiolase_C 101 .ggklgvaalCigggqgvalvie 122
                  + ++g++a+Cig g+g +++ e
  KIR65721.1 367 pEVRYGLTAMCIGIGMGGTVIWE 389
                 368**************998865 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.4   1.2e-05     0.069     169     206 ..      88     125 ..      83     149 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.2e-05
                    EEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE--- CS
  ketoacyl-synt 169 vtvdtACsSslvavhaavqslrsgeadvalaGGvelll 206
                    +++d  C+ + +av  +   +  g  dva+aGGve + 
     KIR65721.1  88 FAIDRMCAGAMTAVTTVAGGIAMGAYDVAIAGGVEHMG 125
                    788999*****************************775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2746.39
//
Query:       KIR65722.1  [L=442]
Description: 3'-5' exonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-35  120.0   0.0    1.1e-34  119.6   0.0    1.1  1  DNA_pol_A_exo1  3'-5' exonuclease
    3.8e-28   97.6   1.0    3.8e-28   97.6   1.0    2.2  2  DNA_pol_A_exoN  3' to 5' exonuclease C-terminal domain
    2.8e-15   56.1   1.2    4.4e-15   55.4   0.2    1.9  2  HRDC            HRDC domain


Domain annotation for each model (and alignments):
>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.0   1.9e-38   1.1e-34       2     175 ..      54     218 ..      53     219 .. 0.97

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 1.9e-38
                     EEEHSHHHHHHHHHHHTTSS.EEEEEEEEE-SSSTTSSEEEEEEEEECS.SEEEEEECTTTTTT-HGHHHHHHHT-TTSEEEESSHHHHHHHHHH CS
  DNA_pol_A_exo1   2 eivtdeeeleelieelknlk.vvavDtEttsldlisatlvliliqlgek.eeayiidplelgddvalealkrlledenitkvghnakfDlevlar 94 
                     e vt+e++l+e++++ ++ + +va+D E  s +   ++++ +l+ql++   ++++idpl l+d   l+ l   ++d+  ++v+h+a++Dl +la+
      KIR65722.1  54 EPVTTEAGLAEVVARFAAGTgPVALDAERASGYR--YSQRAYLVQLRRAgAGTALIDPLPLPD---LSSLDLAIADA--EWVLHAASQDLTCLAE 141
                     789*************99999*************..************99*************...9********98..7*************** PP

                     HHTS--SSEEEHHHHHHHTTHSTTSSHHHHHHHHHSB---GHCCTTSSTTTSSS-HHHHHHHHHHHHHTHHHHHHHHHHHH CS
  DNA_pol_A_exo1  95 dfgielenlfdtmlaayvldyershsLdsLaekylgdleldkeeqiakwqkarplleeqllYAaeDadvllrlfkkLtkel 175
                      +g  +++lfdt+laa++ ++er ++L+ L+e++lg + l+k + +a+w+  rpl+e++l YAa+D+++l  l++ L  el
      KIR65722.1 142 -VGLRPRRLFDTELAARLAGFER-VGLAALTEQLLG-FSLEKHHSAADWS-SRPLPESWLTYAALDVEMLTDLRDVLDAEL 218
                     .**********************.************.*************.*************************99887 PP

>> DNA_pol_A_exoN  3' to 5' exonuclease C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.57   3.4e+03      22      74 ..     210     226 ..     191     237 .. 0.51
   2 !   97.6   1.0   6.4e-32   3.8e-28       1      87 []     349     435 ..     349     435 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.57
                     HHHHHHHHHHHHT--HHHHS-HHHHHHHH-SS-G..GG--HHHHHHHHT--HH CS
  DNA_pol_A_exoN  22 vraaleelaeeleipvenlltpdllrrlvWeppetlteeavsaaLaelgaReW 74 
                      r++l                                    +a La +g   W
      KIR65722.1 210 LRDVL------------------------------------DAELARQGKSAW 226
                     33333....................................334444444444 PP

  == domain 2  score: 97.6 bits;  conditional E-value: 6.4e-32
                     --S-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHT--HHHHS-HHHHHHHH-SS-G..GG--HHHHHHHHT--HHHHHHHHHHHHHHH CS
  DNA_pol_A_exoN   1 GlPppraWaekdPeaaerlkavraaleelaeeleipvenlltpdllrrlvWeppetlteeavsaaLaelgaReWQvelvapllaeaL 87 
                     G+Ppp++Wae+dP aa rl+++r+++  +a e+++p+enl+ pd +rrl+W+ppe++te +v+++L++ gaReWQ +l++p l+ aL
      KIR65722.1 349 GPPPPHRWAERDPVAAGRLARCREVVVRIAGEHALPPENLIAPDSIRRLAWTPPEEVTEATVAETLRGFGAREWQLSLLVPDLTAAL 435
                     8***********************************************************************************998 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.2   7.4e-19   4.4e-15       3      68 .]     265     330 ..     263     330 .. 0.97
   2 ?   -2.8   0.0       1.1   6.7e+03       7      37 ..     369     399 ..     359     407 .. 0.68

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 7.4e-19
                 HHHHHHHHHHHHHHHHHTS-HHHHS-HHHHHHHHHH---SHHHHHTSTTT-HHHHHHHHHHHHHHH CS
        HRDC   3 allkaLrewReelAreedvppyvvfpdktLleiAeklPttleeLlqiegvgkrklekygeeileai 68 
                 a+ +aL+ +R+++A ++d +p++v+pd+++++ Ae +P++++ Ll+++g+g r +++ ++++l+a+
  KIR65722.1 265 ARIRALWYARDQIAARRDAAPGRVLPDSAIVAAAELDPKDEKTLLTLPGFGGRSVRRLARTWLAAL 330
                 7889***********************************************************985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHTS-HHHHS-HHHHHHHHH CS
        HRDC   7 aLrewReelAreedvppyvvfpdktLleiAe 37 
                 + re+  ++A e  +pp ++   + ++ +A 
  KIR65722.1 369 RCREVVVRIAGEHALPPENLIAPDSIRRLAW 399
                 4566777788888888877766666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3002.52
//
Query:       KIR65723.1  [L=418]
Description: peptidase S1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-20   73.4   3.7      1e-19   71.9   3.7    1.8  1  Trypsin_2      Trypsin-like peptidase domain
    1.8e-07   31.2   0.2      3e-07   30.5   0.2    1.3  1  Trypsin        Trypsin
  ------ inclusion threshold ------
      0.049   13.4   0.2      0.093   12.6   0.2    1.4  1  Peptidase_S7   Peptidase S7, Flavivirus NS3 serine protease
       0.16   10.6   0.1       0.24   10.0   0.1    1.2  1  Peptidase_S46  Peptidase S46


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   3.7   2.3e-23     1e-19       2     150 .]     254     391 ..     253     391 .. 0.87

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 2.3e-23
   Trypsin_2   2 sGflvgsdg.....lilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplg 95 
                 ++f vg+ +      + Tn+Hvv+s   +       ++ + ++ ++++pa++v++d+  D+A l+      +++  l  +p +a+k+g++++vvG plg
  KIR65723.1 254 TAFAVGKPDtgggtNLFTNFHVVESVWVGGG-----REVFLERTDQRYPATIVKVDEVNDIAQLRT----TSKFTGLVTAP-AAVKPGQQIVVVGAPLG 342
                 5555555433344569*********999999.....89999***************888*******....66666666666.4577899********** PP

   Trypsin_2  96 geksgsvssGivsgvvesesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                  ++  sv++G+vs+ +e    a++ +  ++q da+++pG+SGGp+++ + +vvG+
  KIR65723.1 343 LQD--SVTTGVVSAFRE----AGQGSGPVIQFDAPINPGNSGGPVINGQKQVVGI 391
                 ***..9***********....999999999************************8 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.2   6.8e-11     3e-07      38     215 ..     270     409 ..     265     413 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 6.8e-11
                 EEEGGGTTTGGGEEEEESE.SBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCSTTHTTSTTTEEEEEESSBSSTSSB CS
     Trypsin  38 lTAaHCvsnasdvkvvlge.hnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpvgttclvsGwgrtkekgk 135
                  T+ H+v++     v++g  +++  ++++ q+++   v     +++    nDia l+ +++     ++  +  pa    +++g++++v+G +   ++  
  KIR65723.1 270 FTNFHVVES-----VWVGGgREVFLERTD-QRYPATIVK----VDEV---NDIAQLRTTSK-----FTGLVTAPA---AVKPGQQIVVVGAPLGLQD-- 345
                 689999997.....788887777777775.777776643....3554...6*******999.....777778888...678***********96444.. PP

                 SSBEEEEEEEEEEHH.HHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEESSSSCTTSEEEEEEGG CS
     Trypsin 136 sdtlqevevpvvsre.tcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswgkgcakgnrpgvytkvs 215
                   +++++ v++  ++ +         +   ++ +a      +++G+SGGP++++++++vGi +++   a+g  +g +++++
  KIR65723.1 346 --SVTTGVVSAFREAgQG--------SGPVIQFDA-----PINPGNSGGPVINGQKQVVGIATAKARDAEG--IGLAVPIK 409
                 ..4555555554443222........35679****.....7***********************9887777..56665554 PP

>> Peptidase_S7  Peptidase S7, Flavivirus NS3 serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   2.1e-05     0.093      90     113 ..     369     392 ..     299     400 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
                   XXXXXTT-TTSEEE-TTSXEEEEC CS
  Peptidase_S7  90 dlnlssGsSGSlvlnqnkqivgiY 113
                   d   ++G SG +v+n +kq+vgi 
    KIR65723.1 369 DAPINPGNSGGPVINGQKQVVGIA 392
                   666789****************95 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   5.4e-05      0.24     631     651 ..     372     392 ..     365     399 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 5.4e-05
                    --TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 631 itGGNSGSPvlngkgelvGla 651
                    i  GNSG Pv+ng+ ++vG+a
     KIR65723.1 372 INPGNSGGPVINGQKQVVGIA 392
                    567****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 2669.12
//
Query:       KIR65724.1  [L=339]
Description: hypothetical protein TK50_10280 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0018   17.3   0.2     0.0022   17.0   0.2    1.1  1  LMBR1           LMBR1-like membrane protein
     0.0099   16.2   2.7      0.016   15.6   2.7    1.2  1  OmpH            Outer membrane protein (OmpH-like)
  ------ inclusion threshold ------
      0.018   15.2   1.2      0.026   14.7   1.2    1.2  1  SesA            N-terminal domain on NACHT_NTPase and P-loop 
      0.024   14.7   1.4      0.032   14.2   1.4    1.2  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
      0.077   13.4   4.9        0.1   13.0   4.9    1.1  1  Fez1            Fez1
      0.094   12.8   1.5       0.15   12.1   1.0    1.4  1  DUF1664         Protein of unknown function (DUF1664)
       0.12   12.8   5.5      0.055   13.8   2.4    1.8  2  HrpB7           Bacterial type III secretion protein (HrpB7)
       0.14   11.9   0.7       0.22   11.3   0.7    1.2  1  Nsp1_C          Nsp1-like C-terminal region
       0.17   11.0   1.7       0.22   10.6   1.7    1.1  1  FH2             Formin Homology 2 Domain
       0.18   11.6   2.3       0.24   11.2   2.3    1.1  1  Mer2            Mer2
       0.23   10.3   3.4       0.29    9.9   3.4    1.1  1  Spc7            Spc7 kinetochore protein
       0.35   11.0   1.3       0.49   10.5   1.3    1.1  1  UPF0242         Uncharacterised protein family (UPF0242) N-te
          1   10.0   3.9        1.6    9.4   3.9    1.2  1  Cytochrom_B562  Cytochrome b562
        1.2    8.7   5.3        1.6    8.4   5.3    1.1  1  GrpE            GrpE
        2.3    7.5   8.7        4.2    6.6   8.7    1.4  1  DUF4407         Domain of unknown function (DUF4407)
        2.5    5.9   3.2        3.2    5.5   3.2    1.0  1  V_ATPase_I      V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2     2e-06    0.0022     196     268 ..     248     320 ..     209     337 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2e-06
       LMBR1 196 sdldeelkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilkkvPeeiaeklksnenk 268
                 s++d ++ + ++e++kl+t+++   ++l+++ ++++ +r+   e+++ +k++ ++l+k  + ++  +++n+ +
  KIR65724.1 248 SERDGTIAANKTEIEKLKTDLQAVRDKLSNTEQDLTGTRNDRDEQARQKKVIATCLDKLTSALTAAAANNKAA 320
                 678889****************************************999*********999999888774433 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   2.7   1.4e-05     0.016      13     113 ..     232     321 ..     226     335 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-05
                 HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT- CS
        OmpH  13 espegkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqellkpildkinkaikevakekgy 111
                 +s e  + +++l  + ++++ +++a ++e++kl+++lq         + + +l + eq+l    +++ ++ q++q+++++  ldk++ a+++ a+ +++
  KIR65724.1 232 KSSELDRTEKRLTGQVSERDGTIAANKTEIEKLKTDLQ---------AVRDKLSNTEQDLTG-TRND-RDEQARQKKVIATCLDKLTSALTAAAANNKA 319
                 66777778888888888888888888888888888886.........345668889999988.4433.6777777789999999999999999999987 PP

                 SE CS
        OmpH 112 dl 113
                 ++
  KIR65724.1 320 AY 321
                 65 PP

>> SesA  N-terminal domain on NACHT_NTPase and P-loop NTPases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.2   2.3e-05     0.026      27      78 ..     260     311 ..     246     335 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.3e-05
        SesA  27 aFrevgkrLplvqetLedaksqlesskldedtesaikpvlesckekatklee 78 
                 ++++ +  L+ v++ L+ +++ l + ++d d+++  k+v++ c +k+t+  +
  KIR65724.1 260 EIEKLKTDLQAVRDKLSNTEQDLTGTRNDRDEQARQKKVIATCLDKLTSALT 311
                 67788999**************************************998765 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.4   2.9e-05     0.032      49      88 ..     256     295 ..     233     319 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.9e-05
  CENP-F_leu_zip  49 tskaevetlkeeieelaeelreleldLvalrsekeeLeke 88 
                      +k e+e+lk+ ++  + +l++ e+dL+ +r++++e +++
      KIR65724.1 256 ANKTEIEKLKTDLQAVRDKLSNTEQDLTGTRNDRDEQARQ 295
                     5799******************************986554 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   4.9   9.1e-05       0.1      48     115 ..     234     310 ..     229     337 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.1e-05
        Fez1  48 eekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa.........l 115
                 +e +++ k+l  +++e++  +   + e+++ k++ + +r+k++++e++l+++r++  e++++++  a         l
  KIR65724.1 234 SELDRTEKRLTGQVSERDGTIAANKTEIEKLKTDLQAVRDKLSNTEQDLTGTRNDRDEQARQKKVIAtcldkltsaL 310
                 567888999999******************************************98886655444334444433321 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.0   0.00013      0.15      54     104 ..     233     283 ..     224     288 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
     DUF1664  54 seslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedve 104
                 s++l +t ++L+ ++ + d ++ ++k  ++++k ++++vr++ls++++d++
  KIR65724.1 233 SSELDRTEKRLTGQVSERDGTIAANKTEIEKLKTDLQAVRDKLSNTEQDLT 283
                 68999******************************************9985 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.4   4.9e-05     0.055      87     145 ..     232     290 ..     224     301 .. 0.88
   2 ?    0.1   0.7      0.83   9.3e+02      30      57 ..     291     318 ..     285     336 .. 0.44

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.9e-05
       HrpB7  87 rvraaeaelaaarqaldaaedavaatarkiaRndaqidacrerierlrraaeraredaa 145
                 ++ ++++ ++++++++ ++   +aa +++i +++  ++a+r ++   ++++   r+d  
  KIR65724.1 232 KSSELDRTEKRLTGQVSERDGTIAANKTEIEKLKTDLQAVRDKLSNTEQDLTGTRNDRD 290
                 5678999***************************************9999988887754 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.83
       HrpB7  30 alaaaeaalaaaqaqveaardavrahee 57 
                 ++a  ++ +a + +++  a +a++a+++
  KIR65724.1 291 EQARQKKVIATCLDKLTSALTAAAANNK 318
                 3333333333333333333333333222 PP

>> Nsp1_C  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.7    0.0002      0.22      39      91 ..     241     293 ..     229     319 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
      Nsp1_C  39 eeqakkvneWDrvLvengekIskLysevleaeqeqnkidqeLeyiesqqdeLe 91 
                 ++ + +v+e D ++  n  +I+kL++++ +++ + ++ +q L+   +++de  
  KIR65724.1 241 KRLTGQVSERDGTIAANKTEIEKLKTDLQAVRDKLSNTEQDLTGTRNDRDEQA 293
                 457889************************************99999888855 PP

>> FH2  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.7    0.0002      0.22     272     342 ..     255     325 ..     235     337 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0002
                 HCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         FH2 272 kaakvnleslekevkklekglkklekelessekkeepsdkflevlkeflkeaeeklkkleeelkeakelvk 342
                  a k ++e+l++++++++++l+++e++l+  +++++++ + ++v+ + l++ ++ l    ++ k a ++++
  KIR65724.1 255 AANKTEIEKLKTDLQAVRDKLSNTEQDLTGTRNDRDEQARQKKVIATCLDKLTSALTAAAANNKAAYDKAT 325
                 578999***************************99999999999999998888877777766666655555 PP

>> Mer2  Mer2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.3   0.00021      0.24      57     155 ..     233     326 ..     224     334 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
        Mer2  57 skeLlkvisklnellidlkeeesdnskekeikdlikdLsvkienqlskvskavldklk.vkkhksntdtksnLtellekkeakileeidkkqtkleksv 154
                 s eL +  ++l+ ++ + +       ++   k+ i++L++ ++   +k+s++ +d +   ++++++  +k+++  +l+k ++ ++ +  +++  + k+ 
  KIR65724.1 233 SSELDRTEKRLTGQV-SER-----DGTIAANKTEIEKLKTDLQAVRDKLSNTEQDLTGtRNDRDEQARQKKVIATCLDKLTSALTAAAANNKAAYDKAT 325
                 566666666666666.222.....23444445566666666666666666665554431456788889999999**************99999999887 PP

        Mer2 155 d 155
                 +
  KIR65724.1 326 E 326
                 6 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.4   0.00026      0.29     176     253 ..     236     313 ..     225     334 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00026
        Spc7 176 kaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaea 253
                  ++ e++l+ + ++++   + +k+e+e+l+ +l+++  ++++ +++l+  +++++e++ + + +++  ++l +++ +a
  KIR65724.1 236 LDRTEKRLTGQVSERDGTIAANKTEIEKLKTDLQAVRDKLSNTEQDLTGTRNDRDEQARQKKVIATCLDKLTSALTAA 313
                 333444444444444444557899999999999999999999999999888888888888887777777777776655 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.3   0.00043      0.49      94     150 ..     243     299 ..     228     316 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00043
     UPF0242  94 lqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqel 150
                 l+ +  e+   ++a ++e+e+lk + q ++ kl+++ +d    + + +eq ++k+  
  KIR65724.1 243 LTGQVSERDGTIAANKTEIEKLKTDLQAVRDKLSNTEQDLTGTRNDRDEQARQKKVI 299
                 334444555559999***********************************9999865 PP

>> Cytochrom_B562  Cytochrome b562
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.9    0.0014       1.6      16      93 ..     255     331 ..     244     335 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0014
  Cytochrom_B562  16 vakaddaeelkkalkelraaaedakeatpsklekdseeqkdYqeGldklidqldkaealakagkleeakaalkelkdl 93 
                     +a+ +++e+lk++l++ r   ++ ++      ++d+ eq+  ++ + + +d+l++a ++a+a++ ++  +a++ ++++
      KIR65724.1 255 AANKTEIEKLKTDLQAVRDKLSNTEQDLT-GTRNDRDEQARQKKVIATCLDKLTSALTAAAANNKAAYDKATEGMNKV 331
                     44666666666666666666666666655.4445******************************99999999998875 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.3    0.0014       1.6       7     105 ..     240     338 ..     232     339 .] 0.76

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
                 CTTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC....HHH-HHHHHHHHHHHHHHHH CS
        GrpE   7 eeeeedeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfaiekfakdLLpvlDnleralksak..eneeekslleGvemtlkqll 103
                 e+ ++ +  e +  +++ ++e+++lk +l+  + ++ n ++ +   +++  + a +k  k +   lD+l  al +a   ++++ ++  eG++ + ++ +
  KIR65724.1 240 EKRLTGQVSERDGTIAANKTEIEKLKTDLQAVRDKLSNTEQDLTGTRNDRDEQARQK--KVIATCLDKLTSALTAAAanNKAAYDKATEGMNKVCDEAE 336
                 556666667777778888889999999999999999999999988888888888888..7777888999999888774455555599999988887776 PP

                 HH CS
        GrpE 104 ki 105
                 ++
  KIR65724.1 337 NY 338
                 65 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   8.7    0.0038       4.2     125     217 ..     237     326 ..     224     337 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0038
     DUF4407 125 eqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalra 217
                 +++++ lt +++e +  iaa ++ei++++++l+a r+++ +  +  +gt+ + +  +    k   + ld+++ +l+++ a+  ++a+ +++ +
  KIR65724.1 237 DRTEKRLTGQVSERDGTIAANKTEIEKLKTDLQAVRDKLSNTEQDLTGTR-NDRDEQARQKKVIATCLDKLTSALTAAAAN--NKAAYDKATE 326
                 34455677888888888888888888888888888888875544322222.222222222222344455555555555555..5555555444 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   3.2    0.0029       3.2      48     131 ..     238     322 ..     229     338 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0029
  V_ATPase_I  48 klekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleee.eeeeeeeeseee 131
                 ++ek  + + ++ + + a++++e+++l+++l+ + ++l+++++ l+  ++++ e   +k+v+ ++ + l+++ ++ ++++++  +
  KIR65724.1 238 RTEKRLTGQVSERDGTIAANKTEIEKLKTDLQAVRDKLSNTEQDLTGTRNDRDEQARQKKVIATCLDKLTSAlTAAAANNKAAYD 322
                 444444445555677888999******************************************9999998874444333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1614  (0.0900218); expected 358.6 (0.02)
Passed bias filter:                     1059  (0.0590663); expected 358.6 (0.02)
Passed Vit filter:                       183  (0.0102069); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.73u 0.34s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 2292.64
//
Query:       KIR65725.1  [L=190]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-71  239.9   0.2    1.3e-71  239.7   0.2    1.0  1  DUF3000   Protein of unknown function (DUF3000)


Domain annotation for each model (and alignments):
>> DUF3000  Protein of unknown function (DUF3000)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.7   0.2   7.5e-76   1.3e-71       2     175 ..       8     178 ..       7     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 239.7 bits;  conditional E-value: 7.5e-76
     DUF3000   2 paeFreaveslraarlrpeieleeipapqrlapysvAlgaevteeeeeeelatGrlilLhdpageeaWegtfrlvayiraeldaelaaDpllpevawsW 100
                 p++F++av+ lr+a+ r+ei lee+ apqrlapy++Al+a+v ++++e   atGrlilLhdpag+eaW+gt+rlv+y+ ael+ +laaDpllp v+w+W
  KIR65725.1   8 PETFARAVAGLRSAAPRSEIVLEEVGAPQRLAPYAFALSATVLRDDDE--VATGRLILLHDPAGHEAWQGTLRLVTYVTAELEIDLAADPLLPGVGWTW 104
                 99*******************************************999..************************************************* PP

     DUF3000 101 lteaLeeagaeytalgGtvtrvlserfgelaeeeeaaelElRaSWtpaeedlaahleafadllaaaaGlppeegv 175
                 lt+aL++++a ++a+gGt+t+++s+rfg+la+++ a ++E+RaSWtp  edl+ hl a+++lla++aGlpp  gv
  KIR65725.1 105 LTDALDAQDAPHRAIGGTITQTMSTRFGDLAGPPAAGDIEIRASWTPLGEDLTPHLMAWCTLLASTAGLPPP-GV 178
                 ***********************************************************************8.77 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       182  (0.0101512); expected 358.6 (0.02)
Passed bias filter:                      158  (0.00881254); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1303.68
//
Query:       KIR65726.1  [L=363]
Description: uroporphyrinogen decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     6e-128  426.8   0.0   6.7e-128  426.7   0.0    1.0  1  URO-D     Uroporphyrinogen decarboxylase (URO-D)


Domain annotation for each model (and alignments):
>> URO-D  Uroporphyrinogen decarboxylase (URO-D)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.7   0.0  3.7e-132  6.7e-128       4     345 ..      23     356 ..      20     357 .. 0.97

  Alignments for each domain:
  == domain 1  score: 426.7 bits;  conditional E-value: 3.7e-132
                 -HHHHHHTT---SS--B--TT-SSTTSHHHHHHHTSSSHHHHHH-HHHHHHHHHHHHHHH--S-EE-S--TTGGGGGGT-EEEEETTTEEEEE--S-.. CS
       URO-D   4 erllralrgekvdrvPvwlmRqaGrylpeyraeragvsflelcknpelaaevtlqpvrrfglDaailfsdilveaealGlevefeegegPvvekpvrta 102
                 ++++ra+r+e+ +++Pvw+mRqaGr+lpeyr++r++v +le c+ pel+ae+tlqpvrr+g+Daailfsdi+v+ +a+G+e+++++g+gPvv++pvrt+
  KIR65726.1  23 SPFVRACRREPGPHTPVWFMRQAGRSLPEYREIRKNVGMLESCRRPELVAEITLQPVRRHGVDAAILFSDIVVPVAAAGVELDIVAGTGPVVAEPVRTL 121
                 679************************************************************************************************ PP

                 ..GGGS----GGG.G..HHHHHHHHHHHHH.--SS-EEEEEE-HHHHHHHHHCTT.-SS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SE CS
       URO-D 103 edveklevpddveegrlpyvleaikllkkelggevpligfvgaPftlasylveGg.skgfekllkllykdpeevhklldkltdvvieylkaqieagAda 200
                 +dve++++    +   ++yv ea++ll +elg ++pligf+gaPftlasylveGg s++++k+++l+y +pe++h+l+ +l++v+ ++l+ q+eag++a
  KIR65726.1 122 ADVERIRPITRAD---VSYVDEAVRLLVAELG-DTPLIGFAGAPFTLASYLVEGGpSRTHAKTKALMYGEPELWHALCARLAEVTLAFLRVQVEAGVSA 216
                 *******998754...***************6.****************************************************************** PP

                 EEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHH.H--S-EEEEESSHH.HHHHHHTTS--SEEE--TTS-HHHHHHSS....EEE--B-G.GGGGS-HH CS
       URO-D 201 iqifDswagllspedfeefvlpylkrivdevkaegpkvpvilfikgagaeiledlaelgadvlsldwtvdlkeaarevgdkvalqGnldPialLlgspe 299
                 +q+fDswag+ls++d++++vlp+++++++++ +   +vp i+f+ g++ e+l+++ e+gadv+++dw+++l  a r++g+ +a+qGnldP ++L++++ 
  KIR65726.1 217 VQLFDSWAGALSEADYRRYVLPHSTKVLAGLVDA--GVPRIHFGVGTA-ELLPAMGEAGADVVGVDWRTPLDVASRRIGADKAVQGNLDP-CVLFAPWP 311
                 *********************************8..58*********9.9*********************66666999***********.9******* PP

                 HHHHHHHHHHT.T---SSSEEB-BSS---TTS-HHHHHHHHHHHHT CS
       URO-D 300 eiekevkeilekgaggkkgyilnlGhgippetppenvkalveavke 345
                 ++e+ev++il++g++ ++g+++nlGhg++pet+p+ ++++v +v+e
  KIR65726.1 312 VVEAEVQRILAEGRA-TPGHVFNLGHGVLPETDPDVLTRVVALVHE 356
                 ***********7666.9****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.55
# Mc/sec: 2004.73
//
Query:       KIR65727.1  [L=471]
Description: protoporphyrinogen oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-47  163.5   3.0    1.2e-47  163.3   3.0    1.0  1  Amino_oxidase   Flavin containing amine oxidoreductase
      1e-10   41.7   1.0    2.3e-10   40.5   1.0    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    1.5e-07   31.4  16.2    5.5e-06   26.2  16.2    2.4  1  DAO             FAD dependent oxidoreductase
    1.1e-05   25.5   2.7    0.00036   20.5   0.5    2.4  2  NAD_binding_9   FAD-NAD(P)-binding
    2.2e-05   23.8   0.7      0.005   16.1   1.1    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      0.006   15.4   0.1     0.0084   14.9   0.1    1.1  1  MCRA            MCRA family
     0.0061   15.3   0.6      0.022   13.5   0.9    1.7  2  HI0933_like     HI0933-like protein
     0.0089   15.4   3.3      0.015   14.7   3.3    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
  ------ inclusion threshold ------
       0.03   13.6   0.9      0.051   12.8   0.9    1.3  1  Thi4            Thi4 family
      0.045   12.8  10.9      0.024   13.7   3.3    2.2  2  FAD_binding_2   FAD binding domain
      0.046   14.3   0.8       0.13   12.8   0.8    1.8  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
       0.42    9.4   1.4       0.58    8.9   1.4    1.1  1  Trp_halogenase  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.3   3.0   8.1e-51   1.2e-47       1     452 []      14     464 ..      14     464 .. 0.87

  Alignments for each domain:
  == domain 1  score: 163.3 bits;  conditional E-value: 8.1e-51
                    HHHHHHHHHH...HHTTEEEEEEESSSSSBTTS-EEEETTEEEESS--EEET.....TTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTEECC.. CS
  Amino_oxidase   1 laGLaaArqL...lsaGfdVtvlEardrvGGRirtvrsdGylielGamwftg.....agnpllellkelgledslslpdpgapkrvlskggref.. 86 
                    ++GLaaA +L   + aG +Vtv+E ++ +GG++rt ++ G ++e Ga +f +     +++++ +l+++lgl  + + p+ g   ++l ++g+    
     KIR65727.1  14 ITGLAAAVRLadrAPAGTEVTVYEQSGVLGGKLRTGELAGGPVEFGAESFLMrdpagGESAAVALVRRLGLAGDIVHPSVG--QAALAVDGGLRpi 107
                    79********4444456********************************************************99999988..8888876665545 PP

                    .TTEECHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTSTTT CS
  Amino_oxidase  87 .pgdlspvpaewealleqgalsaellsleeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagdps 181
                      g+l  vp+ +++++           + e    ++  +       ++l  +  + s+ +l r ++gd +v drl++p       +++g++ag  +
     KIR65727.1 108 pGGTLVGVPGDLAKVAA----------VAEPAADADRDEG------RPLLAPGADVSVGALVRARFGD-AVADRLVDP-------MLGGVYAGRAD 179
                    44555555555555555..........5555555555555......9*********************.*********.......*********** PP

                    TCBHHHHTCCCCHHHHHTSCCCEE....................TTHTHHHHHHHHHTTTTEEEETSEEEEEEEEETTCEEEEET...TSTEEEES CS
  Amino_oxidase 182 elsaklalpllwelegfggslllp....................rgGlsqlpealaeelrgldirlntrVkeikregdgvtvtle...dgevveaD 254
                    +ls+  ++p+l +    +  l+ +                     gGls+l+ea a+ ++g +ir  + V+e++r + g ++t+    d e v+aD
     KIR65727.1 180 DLSLATTMPALARAARVEHTLVGAvraaqaaaprapgepvfgtlAGGLSRLVEAAAA-AGGATIRRHAAVRELTRTATGWRLTVGptrDPELVDAD 274
                    ************999999998888*********************************.*********************88887655577777*** PP

                    EEEE-S-HHHHHSSEEES..CCSHHHHHHHHHSEEEEEEEEEEEESSGGSGCSTSECE..CECCCEEETTTEEEEECCECC.CSTTTEEEEEEEEE CS
  Amino_oxidase 255 aVvvTvplgvlkailfsP..plpdekaeairnlgfgsvnkvilefdrkfwednalgqg..vlvseltttlgeafissdfps.rappgkglvllvyv 345
                    aV+++vp + ++  l+     l +e+++ +  l+++sv+ v l+ +r+  + ++   g  v+ +e++ + +++f+ +++ +  +p+g  l + + v
     KIR65727.1 275 AVLLAVPARPAA-RLLAGvaDLAPEAVATVGALDYASVALVTLALPRPELPALS---GflVPATEGLLVKASTFFTTKWGHlTRPDGLAL-VRASV 365
                    ************.444446899779***********************977654...444899999999999999999665156666666.66666 PP

                    C..HHHHHHHTTS-HHHHHHHHHHHHHHHHTGTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCH...HCSTTEEE.SGGGCTTTTTS CS
  Amino_oxidase 346 g..gdaaneleslsdeelvqavlrdLrklfgeevpepkatlvtrWhtdplargsysyvsvgpghedydplakp...egdprlffAGehtsreypgt 436
                    g  g++a    +++d++lv+av r+L+k++g+  p p+a +v rW+  +l+       +++pgh+d+ +  +      +p+l +AG+     y g+
     KIR65727.1 366 GryGEEAS--LQVTDDDLVEAVHRELSKVLGTPLPAPVASHVQRWG-GALP-------QYTPGHLDRVAAVRAalrGAHPTLALAGAG----YDGV 447
                    62222222..456*********************************.9999.......******************************....99** PP

                    .HHHHHHHHHHHHHHHH CS
  Amino_oxidase 437 .vegAilSGlraAaril 452
                     ++ +++SG +aA++i+
     KIR65727.1 448 gIPVCVRSGETAAEEII 464
                    ***************97 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   1.0   1.6e-13   2.3e-10       1      53 [.       9      64 ..       9      82 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 1.6e-13
                   EE--SHHHHHHHHHHHCC...TEEEEEE-SSSSSSGGG-EECETTCEECTS---EE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka...gfdvlllekrdrlGGraasyevpgvrvdygahifh 53
                   IvG+G++Gl+aA +La++   g +v+++e++  lGG++++ e+ g +v+ ga  f 
     KIR65727.1  9 IVGGGITGLAAAVRLADRapaGTEVTVYEQSGVLGGKLRTGELAGGPVEFGAESFL 64
                   9***************97677**********************99999*9998885 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2  16.2   3.7e-09   5.5e-06       1     316 [.       6     420 ..       6     461 .. 0.54

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 3.7e-09
                 EEEEECTSHHHHHHHHHHHHT.T....EEEEESSSSTT..SSGGGSSEEEEESSS.....STHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEE CS
         DAO   1 dvviiGGGiiGlstAyeLarr.g....Vtllekgdiag..sgaSgrnsgllhsgl.....rylpeaselarlslealeelreleeelgididyrrtGll 87 
                 +v+i+GGGi+Gl++A  La r +    Vt++e++  +g    +   ++g +  g      r+++ +        +a+++ r+l    + di ++  G  
  KIR65727.1   6 RVAIVGGGITGLAAAVRLADRaPagteVTVYEQSGVLGgkLRTGELAGGPVEFGAesflmRDPAGG------ESAAVALVRRLGL--AGDIVHPSVGQA 96 
                 59****************9665355*********66663224444444444444444333222222......1222233333332..225666666666 PP

                 EEESS.............................HHHHHHHHHHHHHH.HHTTTTEEEEEHHHHHHHSTT..ST....TTSEEEEETTEEEEEHHHHHH CS
         DAO  88 slaad.............................eeelealdkllall.leagldaelldaeevrelepa..lp....gllgalfypdtgqvdpaklta 150
                  la d                             +      d+  +++ l+ g+d++ +  ++vr+++     +    + lg+++   +  +  a  ++
  KIR65727.1  97 ALAVDgglrpipggtlvgvpgdlakvaavaepaaD-----ADRDEGRPlLAPGADVS-VG-ALVRARFGDavADrlvdPMLGGVYAGRADDLSLATTMP 188
                 66655556666666666666666666655433330.....22322332333333322.22.34555554333113444555666544444444444444 PP

                 H.........................................HHHHHHHTT-EEEESECEEEEEEEETCEEEEE...EECTEEEEEEEEEEE--GGGHH CS
         DAO 151 a.........................................laraaealGveilegtevtgleeedgkvwgve...rttpgendaadavVnaaGawsd 205
                 a                                         + +aa+a+G++i++++ v++l ++   +w++    +  p+ +da dav +a  a   
  KIR65727.1 189 AlaraarvehtlvgavraaqaaaprapgepvfgtlagglsrlVEAAAAAGGATIRRHAAVRELTRT-ATGWRLTvgpTRDPELVDA-DAVLLAVPARPA 285
                 466666777777777777777777777777777777777773555578888************664.4679997875333355555.99****987754 PP

                 ..HHHTTCTTTSEEEEEEEEEEEE.EECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEE.EESSE........................EETTCS CS
         DAO 206 ..llgllkeldlpispvrgqvlvl.kplseklvspaailpvpetdddgrgvyvtprkdgrvlv.Ggtad........................eesgdd 276
                   ll+++ +l     p   + +++   l+ + v+    l++p +  ++ + +++p  +g +lv  +t                          ee++  
  KIR65727.1 286 arLLAGVADL----AP---EAVATvGALDYASVAL-VTLALPRPELPALSGFLVPATEG-LLVkASTFFttkwghltrpdglalvrasvgrygEEASL- 374
                 5233333344....22...2222212222222222.33344446677777777777666.44424444366666666666666666666554333333. PP

                 STSCSHHHHHHHHHHHHHHSGG.....GCGEEEEEEEEEE..ETTSS CS
         DAO 277 dpevdeedidellealrklfPq.....lgdvlrkwaGlrp..lpdgl 316
                  + +d++ ++++ ++l+k++ +     +++ +++w G +p  +p +l
  KIR65727.1 375 -QVTDDDLVEAVHRELSKVLGTplpapVASHVQRWGGALPqyTPGHL 420
                 .346667788899999999955422232333459******6435442 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.5   2.4e-07   0.00036       1      40 [.       8      44 ..       8      51 .. 0.89
   2 ?    4.5   0.1     0.021        32     107     153 ..     230     280 ..     221     282 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.4e-07
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagr 40
                   aivG+G++Gla++ rL++ra  ++ +e+t++++s+   g+
     KIR65727.1  8 AIVGGGITGLAAAVRLADRA--PAGTEVTVYEQSGVL-GG 44
                   8******************8..***********9995.33 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.021
  NAD_binding_9 107 llarl..pegvtvevhraevvdleeradgqavll...adgaslaadaVvLAl 153
                    l++++    g t++  +a v +l+++a+g++++    +d + ++adaV LA+
     KIR65727.1 230 LVEAAaaAGGATIRR-HAAVRELTRTATGWRLTVgptRDPELVDADAVLLAV 280
                    444442123344443.567899*******98776553444567*******97 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.1   3.3e-06     0.005       2      33 ..       6      40 ..       5      61 .. 0.83
   2 !    5.1   0.0    0.0078        12     184     244 ..     226     289 ..     214     300 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.3e-06
                 SEEEE--SHHHHHHHHHHHH...HTS-EEEEETTH CS
                 xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq...agakvtlveleg 33
                 +v+++GgG+ Glaaa +la    ag +vt++e+ g
   KIR65727.1  6 RVAIVGGGITGLAAAVRLADrapAGTEVTVYEQSG 40
                 79******************9988*******6333 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0078
                  HHHHHHHHHHHHTTEEEEESCEEEEEEETTE..EEE.EEETTSCEEEESEEEE-S-EEES-HHC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 184 elsaaleealekeGvevklgtsvkeidgnge..kle.vvledgeeidadlvvvavGvrpstell 244
                   ls+ +e+a  + G +++ ++ v e+++  +  +l+   + d e +dad v++av  rp  +ll
   KIR65727.1 226 GLSRLVEAAAAAGGATIRRHAAVRELTRTATgwRLTvGPTRDPELVDADAVLLAVPARPAARLL 289
                  68899999999999*************999977777667778888**********999998887 PP

>> MCRA  MCRA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   5.6e-06    0.0084       5      46 ..       8      48 ..       5      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.6e-06
                EEE--SHHHHHHHHHHHHTT---GGGEEEE-SS--------- CS
        MCRA  5 ylvGsGiasLaaAvyLirdakvpgenihileelkvaggsldg 46
                 +vG+Gi++LaaAv L   a   g++++++e++ v+gg+l +
  KIR65727.1  8 AIVGGGITGLAAAVRLADRAP-AGTEVTVYEQSGVLGGKLRT 48
                59**************87775.79**************9876 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.9   1.5e-05     0.022       2      41 ..       6      48 ..       5      54 .. 0.89
   2 ?   -2.0   0.0      0.72   1.1e+03     116     165 ..     232     283 ..     224     345 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.5e-05
                 SEEEE--SHHHHHHHHHH...HHTT--EEEE-SSSSS-HHHHH CS
  HI0933_like  2 dviviGgGaAGlmaAisa...akrgkrVlllekakklgrKili 41
                 +v+++GgG  Gl aA+++   a +g +V+++e+   lg K+++
   KIR65727.1  6 RVAIVGGGITGLAAAVRLadrAPAGTEVTVYEQSGVLGGKLRT 48
                 699**************95556689***************974 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.72
                  HHHHHHHT-EEE-S--EEEEECETTE.EEEEE....TTEEEEESEEEE----S CS
  HI0933_like 116 lkelkeagvklrletevksvekeedgkfrvkt...kseeeleadklvlAtGGl 165
                  ++++ + g ++r + +v++++++++g  r+++   ++ e + ad+++lA+   
   KIR65727.1 232 EAAAAAGGATIRRHAAVRELTRTATG-WRLTVgptRDPELVDADAVLLAVPAR 283
                  55667788899999999999888877.66665433467788899999886544 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   3.3   9.8e-06     0.015       2      39 ..       7      47 ..       6      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.8e-06
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAar...aGakvlLveergvlGGllt 39
                  v +vGGg+ G+aAA+  a    aG +v + e++gvlGG l 
    KIR65727.1  7 VAIVGGGITGLAAAVRLADrapAGTEVTVYEQSGVLGGKLR 47
                  89*************97653337***************874 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.9   3.4e-05     0.051      20      60 ..       7      49 ..       5      70 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.4e-05
                EEEE--SHHHHHHHHHHHHC..TTS-EEEEESSSS--TTTTTT CS
        Thi4 20 vvivGaGssGLtaayylakk..pdlkvailersvspGGGawlG 60
                v+ivG+G +GL+aa  la +   + +v++ e+s  +GG    G
  KIR65727.1  7 VAIVGGGITGLAAAVRLADRapAGTEVTVYEQSGVLGGKLRTG 49
                89****************9985599********9999965544 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   3.3   1.6e-05     0.024       2      38 ..       7      46 ..       6      59 .. 0.87
   2 ?    3.7   0.9     0.018        26     111     214 ..     196     296 ..     153     311 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.6e-05
                   EEEE--SHHHHHHHHHHHH...TTT-EEEEESSSGGGSGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaae...aGlkvavvekeqefggat 38
                   v ++G+G+ GLaAA+++a+   aG +v+v e+ ++ gg +
     KIR65727.1  7 VAIVGGGITGLAAAVRLADrapAGTEVTVYEQSGVLGGKL 46
                   89***************99766799*********999954 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.018
                    B-EEE-TT-SSTEEEE-.STT-.......HHHHHHHHHHHHHHTCT.EEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 111 vdvrelGglsatartlhdaadarr.etlvtghallarlvesarkag.vdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgr 204
                    v  + +G+++a    ++ a++a+    ++t  + l rlve+a +ag  +++ +++++eL++    +tG  ++   +   + + a+av+la  + ++
     KIR65727.1 196 VEHTLVGAVRAA---QAAAPRAPGePVFGTLAGGLSRLVEAAAAAGgATIRRHAAVRELTR---TATGWRLTVGPTRDPELVDADAVLLAVPARPA 285
                    555666777777...332344444356788899999******99999************66...77777776555555556678899999988887 PP

                    ........... CS
  FAD_binding_2 205 .allkellgaa 214
                      ll  +++ a
     KIR65727.1 286 aRLLAGVADLA 296
                    54444444444 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.8     9e-05      0.13       1      34 [.       6      42 ..       6      49 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9e-05
                EEEEECSSHHHHHHHHHHHHTT...SEEEEEESSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg...kkVtvversdkl 34
                +v++vGgG +gl +A  la+ +    +Vtv e s  l
  KIR65727.1  6 RVAIVGGGITGLAAAVRLADRApagTEVTVYEQSGVL 42
                79****************66554449****9988766 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.4   0.00039      0.58       1      35 [.       6      40 ..       6      53 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00039
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SS CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlvesee 35
                    ++ ivGGG+ G  aA  la      +evt+ e++ 
      KIR65727.1  6 RVAIVGGGITGLAAAVRLADRAPAGTEVTVYEQSG 40
                    699******************9999****999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 2905.97
//
Query:       KIR65728.1  [L=233]
Description: hypothetical protein TK50_10300 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-75  250.6   0.2    1.1e-74  250.3   0.2    1.1  1  Chlor_dismutase  Chlorite dismutase


Domain annotation for each model (and alignments):
>> Chlor_dismutase  Chlorite dismutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.3   0.2     6e-79   1.1e-74       1     193 [.      35     222 ..      35     223 .. 0.98

  Alignments for each domain:
  == domain 1  score: 250.3 bits;  conditional E-value: 6e-79
                      HHHHHHHHHHHHHHTTSC..EEEEEEEETSTTTT-SEEEEEEESSHHHHHHHHHHHHHSTGGGGEEEEEEEEEEEEEESSSSS-GGGHHHCHHH CS
  Chlor_dismutase   1 reeaveelealleeaeeg..vlralysvlGlradaDlmlwllretleelqeaerelrrtalgkvlepaysyvsvtelseYkeedeenkshvear 92 
                      re+++ e+eal++e + +  ++r++y+v+GlradaDlm+w+++ t ++lq+a+ ++rrt+lg++l+p++s +++++++e+      nksh++a+
       KIR65728.1  35 RENVTGEVEALFAELAGKdvTVRGTYDVAGLRADADLMIWWHAATSDALQDAYLRFRRTTLGRALTPVWSQLALHRPAEF------NKSHIPAF 122
                      789999********7766689***********************************************************......******** PP

                      HS----SSSEEEEEEEEE-EEGGGS-HHHHHHHHHHHHHHHHGCTTEEEEEEE-TTTSSSSEEEEEEESSTHHHHHHHHHHCTSHHHHHHEEE- CS
  Chlor_dismutase  93 lapelpkkkyvcvYPmsksreWYllpeeeRrelmaeHgeigrkYgkVrqiitgsfGldDyEwgvaleaddleefkdlvyelRfdeasakvaeeg 186
                      la+e+ +++y+cvYP+++s+eWYllp++eRrel+aeHg+++r Y++Vr+++++sf+l+DyEw++a+ead+l++++dl+++lR++ a+++v+ee+
       KIR65728.1 123 LAGEE-ARAYLCVYPFVRSYEWYLLPDAERRELLAEHGKMARGYPDVRANTVASFALGDYEWMLAFEADELHRIVDLMRDLRASGARRHVREEV 215
                      *****.9*************************************************************************************** PP

                      S-EEEEE CS
  Chlor_dismutase 187 pfyvGrr 193
                      pfy+Grr
       KIR65728.1 216 PFYTGRR 222
                      *****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1568.15
//
Query:       KIR65729.1  [L=366]
Description: cellulose-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-34  119.3   2.1    3.2e-34  119.3   2.1    1.4  2  LPMO_10   Lytic polysaccharide mono-oxygenase, cellulose-degr
    6.9e-24   84.1  14.0    6.9e-24   84.1  14.0    2.1  2  CBM_2     Cellulose binding domain


Domain annotation for each model (and alignments):
>> LPMO_10  Lytic polysaccharide mono-oxygenase, cellulose-degrading
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   2.1   3.6e-38   3.2e-34       1     194 []      39     229 ..      39     229 .. 0.85
   2 ?   -3.0   0.1       1.1   9.8e+03      94     101 ..     304     311 ..     258     333 .. 0.58

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 3.6e-38
                 -EEEEETTBHHHHHHH.HGTCTTTTTHHHHSHH....H.....HTHGHHHTTTG-EEET...SHHHHSSTT-TTTTTTHHHTT....GGGGTTSTS--. CS
     LPMO_10   1 HGylssPksRqarcde.gkegpetspqspnseavearC.....ggaavqyeensvekek...rlkaappdgglcgagdsrpneaggksgldergawakp 90 
                 HG + +P+sR++ c++ ++ ++ + ++++++++    C        +++++++++++e    +++aa+pdg+lc+ag   ++  g+ + ld+ gaw++ 
  KIR65729.1  39 HGSVVDPASRNYGCWQrWGADHMNPAMATQDPM----CwqafqADPQAMWNWMGLFREGvagNHQAAIPDGQLCSAGH--TQS-GQYNSLDTIGAWKT- 129
                 ****************88888999999999999....999998667899*****99999*******************..555.77788999999**9. PP

                 ..EEEESESEEEEEEEESS-S-EEEEEEEEE-TT--T.TS-HHGGGEE...EBEEEESSCEESCCTCEEEEEEEEETSS--EEEEEEEEEEE.TSTSSS CS
     LPMO_10  91 vqttytegseiefeveltapHktghfefyitkecfdp.tkpLtwadle...pfatvsdpksrapskeatyyrkvklPegrtgehvllqvWqyvtanstq 185
                   t +++  +++++ + +a+H ++++++y+tk++fd  tkpL w+dle   ++ + + ++ +++ +  ++++  + P grtg+h+++++Wq   + + +
  KIR65729.1 130 --TSISN--SFRIQLNDQASHGADYIRVYVTKQGFDAlTKPLGWSDLElagQIGNTPASQWKKEASGVSIQVPANAP-GRTGRHIVYTIWQA--S-HLD 220
                 ..66664..6**************************************55533333333333255556666677777.9*************..8.889 PP

                 EEEEEEEEE CS
     LPMO_10 186 eaFynCaDv 194
                 +++y C+Dv
  KIR65729.1 221 QSYYLCSDV 229
                 ********8 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.1
                 EEESESEE CS
     LPMO_10  94 tytegsei 101
                 t ++g+++
  KIR65729.1 304 TWANGQQV 311
                 23333333 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.65   5.8e+03      49      65 ..     109     125 ..      99     147 .. 0.64
   2 !   84.1  14.0   7.7e-28   6.9e-24       1      92 [.     269     359 ..     269     365 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.65
                 SEEEEEETTEEEEEE-S CS
       CBM_2  49 natvsqsGnsvtatnvs 65 
                 +a ++qsG+  ++ +++
  KIR65729.1 109 SAGHTQSGQYNSLDTIG 125
                 56666666665555554 PP

  == domain 2  score: 84.1 bits;  conditional E-value: 7.7e-28
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsapt 92 
                 ++aty+  s+W++Gf+++++v+  gssai+gWtv+wt+ +gq+v + W++tv++sG++vta+nv +Ng++a+Gg +sfGf +s tg+n+apt
  KIR65729.1 269 CTATYRPVSSWNGGFQGEIEVT-AGSSAIKGWTVTWTWANGQQVSSYWSSTVTTSGSTVTARNVAYNGSLAAGGKTSFGFVASSTGTNTAPT 359
                 89*******************9.589999***********************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2699.51
//
Query:       KIR65730.1  [L=188]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-14   53.1   0.0    4.4e-14   52.5   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.6e-07   31.6   0.1      2e-07   31.3   0.1    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.4e-05   25.3   0.1    1.6e-05   25.1   0.1    1.3  1  Acetyltransf_1   Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
       0.01   15.9   0.0      0.021   14.9   0.0    1.5  2  Acetyltransf_9   Acetyltransferase (GNAT) domain
      0.059   13.5   0.0       0.11   12.7   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   1.2e-17   4.4e-14      40     125 ..      90     175 ..      84     176 .. 0.90

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 1.2e-17
  Acetyltransf_10  40 gkivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavgeeqeenGirfvpMek 125
                      g +v ++++  d +   +i++++V+p +rg G + +L+ ++++++ ++       ++a+++ v+fY ++GF + g+e +e+Gi ++pM++
       KIR65730.1  90 GGVVAYLRIlADPGglaRIGRVVVAPGARGGGHAGRLMTEALAAVGDR----PCVLEAQSHLVGFYARHGFAVSGPEYVEDGIPHTPMRR 175
                      667778888777778999**************************9555....899*********************************96 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.1   5.6e-11     2e-07      12      75 ..      90     157 ..      30     158 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 5.6e-11
                     TEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHH.HTT.....SEEEEE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  12 gkivGfialslld...aeitrlaVdpeyrgkGiGraLle.aae.....kgiile.qlelnaekaikfYeklGFe 75 
                     g++v ++++  +    a i+r++V+p +rg G + +L++ a       + + le q++l     ++fY+++GF 
      KIR65730.1  90 GGVVAYLRILADPgglARIGRVVVAPGARGGGHAGRLMTeA-LaavgdRPCVLEaQSHL-----VGFYARHGFA 157
                     556666665555588888999*****************833.23444344889999999.....99*******6 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   4.3e-09   1.6e-05      42     117 .]      90     156 ..      29     156 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 4.3e-09
                     TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  42 geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     g +++++++l +p    g a i +++V+p +rg G + +L+++++  + ++ +   vl+ ++   + +++Y ++GF
      KIR65730.1  90 GGVVAYLRILADPG---GLARIGRVVVAPGARGGGHAGRLMTEALAAVGDRPC---VLEAQS---HLVGFYARHGF 156
                     55888898888888...*****************************9999977...885555...55****99**9 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         3   1.1e+04       9      25 ..      20      36 ..      15      47 .. 0.74
   2 ?   14.9   0.0   5.9e-06     0.021      74     126 ..     106     157 ..     103     159 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3
                    GHHHHHHHHHHHTT--- CS
  Acetyltransf_9  9 dldevlellkyaFqdee 25
                     l++ l+l   +F +e+
      KIR65730.1 20 TLHDLLRLRIDVFVVEQ 36
                    57788888888888776 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 5.9e-06
                     EEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--SS..HHHHHTTT-E CS
  Acetyltransf_9  74 agvtgVavapehrgrgvlskLlaraleemreegqplsllfPss..ipiYrrfGye 126
                     a ++ V vap  rg g++ +L+++al+ + +   +  +l + s  +++Y r G+ 
      KIR65730.1 106 ARIGRVVVAPGARGGGHAGRLMTEALAAVGD---RPCVLEAQShlVGFYARHGFA 157
                     67999*********************99986...555666633236888888886 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     3e-05      0.11       9      53 ..      90     134 ..      83     144 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3e-05
  Acetyltransf_CG   9 geevafleYevrkegvldfthTeVpeelrGkGiAkkLvkaaldda 53 
                      g  va+l+  ++++g   +  ++V +  rG G A++L+++al  +
       KIR65730.1  90 GGVVAYLRILADPGGLARIGRVVVAPGARGGGHAGRLMTEALAAV 134
                      556777777788999999***********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1230.94
//
Query:       KIR65731.1  [L=86]
Description: Prokaryotic metallothionein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0024   17.8   9.3      0.081   12.9   4.7    2.1  2  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
  ------ inclusion threshold ------
      0.036   14.3   3.1      0.036   14.3   3.1    2.2  2  Metallothio_Pro  Prokaryotic metallothionein
        1.6    9.0  11.9       0.35   11.1   8.1    1.8  1  zf-UBR           Putative zinc finger in N-recognin (UBR box)


Domain annotation for each model (and alignments):
>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.2   0.00061       3.7      20      45 ..       3      34 ..       2      35 .. 0.86
   2 !   12.9   4.7   1.3e-05     0.081      19      46 .]      39      68 ..      34      68 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00061
  Zn_Tnp_IS1595 20 vCPhCgsr..kayrikt....rglfqCkeCrk 45
                   +C  Cg++   a++++t       f C eC +
     KIR65731.1  3 TCEVCGNDywMAFEVRTvsgdVHTFDCFECAA 34
                   7999*****98888888888*999***99976 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.3e-05
  Zn_Tnp_IS1595 19 fvCPhCgsr...kayriktrglfqCkeCrkq 46
                   ++C hC+++   +  ++++ + f+C +C +q
     KIR65731.1 39 PICEHCQVKivgHGVEVSG-RFFCCGHCARQ 68
                   89********99999***9.********998 PP

>> Metallothio_Pro  Prokaryotic metallothionein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   4.3      0.36   2.1e+03      21      47 ..      19      44 ..       3      46 .. 0.76
   2 ?   14.3   3.1   5.9e-06     0.036       9      39 ..      41      70 ..      37      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.36
                     SEESSS-EESSHHHHHTS-SS---SST CS
  Metallothio_Pro 21 aikkdgkaYCseaCAeGhkdgegCghs 47
                      ++ d +++ + +CA  h+    C+h+
       KIR65731.1 19 TVSGDVHTFDCFECAA-HRLAPICEHC 44
                     5677888899999996.5666667665 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 5.9e-06
                     STT----B-TTTSEESSS-EESSHHHHHTS- CS
  Metallothio_Pro  9 cekClCvvdleeaikkdgkaYCseaCAeGhk 39
                     ce+C   +   ++++  g+++C+  CA+  +
       KIR65731.1 41 CEHCQVKIV-GHGVEVSGRFFCCGHCARQEE 70
                     777776654.79***************9754 PP

>> zf-UBR  Putative zinc finger in N-recognin (UBR box)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   8.1   5.9e-05      0.35      10      57 ..      24      67 ..      16      75 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.9e-05
      zf-UBR 10 evvyrCltCsldetsviCeeCfkaskHeghelvelstkrnggvC.dCGd 57
                  ++ C++C+ ++ + iCe+C  +    gh + e+s +   ++C +C  
  KIR65731.1 24 VHTFDCFECAAHRLAPICEHCQVKI--VGHGV-EVSGRF--FCCgHCAR 67
                578*******************998..99998.444332..45535655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 666.34
//
Query:       KIR65732.1  [L=91]
Description: glycoside hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-07   30.5   0.0    3.5e-07   30.3   0.0    1.1  1  AMPK1_CBM  Glycogen recognition site of AMP-activated protein
  ------ inclusion threshold ------
       0.01   16.1   0.0      0.012   15.9   0.0    1.2  1  CBM_48     Carbohydrate-binding module 48 (Isoamylase N-termi


Domain annotation for each model (and alignments):
>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   3.9e-11   3.5e-07      13      73 ..      26      88 ..      14      91 .] 0.88

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 3.9e-11
   AMPK1_CBM 13 kVyvtGsfnnWk.kkipLk.ksekdfsvilkLpeGthqykFiVDgewrvdpdlptatdeeGnl 73
                 V v Gsfn+W+  + +L+ +++++ +v+++L++G ++++++  g +  d++     de+G++
  KIR65732.1 26 PVSVVGSFNDWEpGRHELVaRRDGTRTVTVRLRPGAYRFRYLAAGGIWLDDESADGVDEQGSV 88
                599********734678886888***********************99999999999999987 PP

>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.9   0.0   1.4e-06     0.012      22      71 ..      24      68 ..       9      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-06
                SSEEEEEECGTTTEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEEEE CS
      CBM_48 22 AekVslvldfnnwdaeeiplkrrrtggvWelflpgdlphgslrYkyrvkg 71
                A  Vs+v++fn+w+  +++l   r +g+ +++++   p g   Y++r   
  KIR65732.1 24 AGPVSVVGSFNDWEPGRHELV-ARRDGTRTVTVR-LRP-G--AYRFRYLA 68
                6679*****************.589999999999.666.5..68887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 698.80
//
Query:       KIR65733.1  [L=136]
Description: methionine sulfoxide reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-51  171.0   0.0    1.1e-50  170.8   0.0    1.0  1  SelR             SelR domain
    0.00038   19.4   0.1       0.25   10.1   0.0    2.0  2  HECT_2           HECT-like Ubiquitin-conjugating enzyme (E2)-
     0.0049   17.0   4.1       0.19   11.9   0.2    2.2  2  Ribosomal_L37e   Ribosomal protein L37e
     0.0056   17.5   0.8       0.23   12.3   0.1    2.3  2  Tnp_zf-ribbon_2  DDE_Tnp_1-like zinc-ribbon
     0.0065   16.3   0.9       0.95    9.4   0.0    2.3  2  Zn_ribbon_SprT   SprT-like zinc ribbon domain
  ------ inclusion threshold ------
      0.013   15.5   0.1      0.028   14.4   0.1    1.5  1  HypA             Hydrogenase/urease nickel incorporation, met
      0.038   14.0   2.1        0.3   11.1   0.1    2.4  2  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
      0.038   14.1   0.0         11    6.3   0.0    2.2  2  DUF678           Protein of unknown function (DUF678)
      0.041   14.1   0.2        0.2   11.9   0.0    1.9  2  Yippee-Mis18     Yippee zinc-binding/DNA-binding /Mis18, cent
      0.051   13.3   0.2         12    5.7   0.0    2.3  2  zinc_ribbon_10   Predicted integral membrane zinc-ribbon meta
       0.09   12.7   0.9        2.8    7.9   0.0    2.6  2  zinc_ribbon_4    zinc-ribbon domain
      0.094   12.8   4.0       0.38   10.8   0.3    2.2  2  DZR              Double zinc ribbon
       0.17   11.4   4.8        6.3    6.4   0.1    3.4  4  zf-ribbon_3      zinc-ribbon domain


Domain annotation for each model (and alignments):
>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.8   0.0   7.8e-54   1.1e-50       1     121 []      14     133 ..      14     133 .. 0.98

  Alignments for each domain:
  == domain 1  score: 170.8 bits;  conditional E-value: 7.8e-54
                 HHHCTSHCCHHHHHHHTT-SSTTSSSTSS--SSCEEEETTTS-EEEECCCCE-STTSSSEESS-STTTTEEEEEEECTTSEEEEEEETTCECEEEEEEC CS
        SelR   1 elkkkLtpeqyevlrekgterpftgeyekekekGvyecavcgepLfssetkfdsgcGwpsFaeaikeeavkekkdtslgmertevvcakcdahlGhvFe 99 
                 e++ +L+pe+++vlre+gterp+tgey ++k+ Gvy+c++cg++L+ s+tkfds+cGwpsF +ai++ avke +d+s+gm+rte++ca+cd+hlGhvF+
  KIR65733.1  14 EWRVRLSPEEFRVLREAGTERPWTGEYVDTKTPGVYRCRACGAQLYPSDTKFDSHCGWPSFDDAIPG-AVKEIEDNSHGMRRTEIRCARCDSHLGHVFR 111
                 79*****************************************************************.******************************* PP

                 .TSSSSS.SEEEEE-CCCEEEEE CS
        SelR 100 .dgpkpttgkrycinsvslkfkp 121
                  +g++p+ ++r+c+ns+s++++p
  KIR65733.1 112 gEGFTPK-DTRHCVNSISIRLEP 133
                 9999996.***********9875 PP

>> HECT_2  HECT-like Ubiquitin-conjugating enzyme (E2)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00018      0.25      71     129 ..      12      64 ..       2      75 .. 0.73
   2 !    7.5   0.1    0.0012       1.6     204     225 ..      88     109 ..      77     117 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00018
      HECT_2  71 elsfrlpldeeessegskdeeslessesekevpWsakdlsa.e.tslrCrsCknvllks.rk 129
                 e ++r++l++ee +  ++           +e pW+ + + + +    rCr+C+++l +s +k
  KIR65733.1  12 EDEWRVRLSPEEFRVLREAG---------TERPWTGEYVDTkTpGVYRCRACGAQLYPSdTK 64 
                 77899999886655544333.........378*******99546899*********999444 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0012
      HECT_2 204 etkpkkeeslsCkrCkatlGee 225
                 ++  +++++++C+rC ++lG++
  KIR65733.1  88 NSHGMRRTEIRCARCDSHLGHV 109
                 46678999************86 PP

>> Ribosomal_L37e  Ribosomal protein L37e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.2   0.00013      0.19      17      41 ..      49      73 ..      38      75 .. 0.92
   2 !    6.5   0.6    0.0066       9.1       6      26 ..      89     106 ..      87     122 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
  Ribosomal_L37e 17 ilCrrCgkrsyhvqkktCascGyps 41
                     +Cr Cg + y   +k  ++cG+ps
      KIR65733.1 49 YRCRACGAQLYPSDTKFDSHCGWPS 73
                    58*********************97 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0066
  Ribosomal_L37e   6 sfGkrqkkktHilCrrCgkrs 26 
                     s G r   +t i+C rC+++ 
      KIR65733.1  89 SHGMR---RTEIRCARCDSHL 106
                     66777...578******9975 PP

>> Tnp_zf-ribbon_2  DDE_Tnp_1-like zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1      0.11   1.5e+02      17      23 ..      49      55 ..      43      60 .. 0.74
   2 !   12.3   0.1   0.00017      0.23      10      26 ..      91     106 ..      88     108 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.11
  Tnp_zf-ribbon_2 17 iiCqeCd 23
                     ++C +C+
       KIR65733.1 49 YRCRACG 55
                     6777775 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00017
  Tnp_zf-ribbon_2  10 kikkeTriiCqeCdvpl 26 
                      ++++ T i+C+ Cd +l
       KIR65733.1  91 GMRR-TEIRCARCDSHL 106
                      7899.*********997 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00069      0.95      21      36 ..      42      60 ..      21      62 .. 0.71
   2 ?    5.3   0.3     0.013        18      22      35 ..      94     107 ..      88     109 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00069
  Zn_ribbon_SprT 21 rrhn...YrCrrCkgtLrg 36
                    ++ +   YrCr C+ +L +
      KIR65733.1 42 DTKTpgvYRCRACGAQLYP 60
                    3434888******988876 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.013
  Zn_ribbon_SprT  22 rhnYrCrrCkgtLr 35 
                     r   rC rC ++L+
      KIR65733.1  94 RTEIRCARCDSHLG 107
                     44579****99997 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1     2e-05     0.028      66     106 ..      44     116 ..      29     121 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2e-05
                 EE--EEEETTTS-EEECHHHHH................................S-TTTSSS-EEEEESSSEE CS
        HypA  66 evpvkvrCreCgkefeleekal................................rCpkCgsadveivsGeell 106
                 ++p ++rCr Cg++   +++++                                rC +C+s+  ++ +Ge+++
  KIR65733.1  44 KTPGVYRCRACGAQLYPSDTKFdshcgwpsfddaipgavkeiednshgmrrteiRCARCDSHLGHVFRGEGFT 116
                 67899*******99995543335578*******************************************9986 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00022       0.3      29      46 .]      40      57 ..      36      57 .. 0.87
   2 ?    2.3   0.2      0.12   1.7e+02      19      27 ..      97     105 ..      86     124 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00022
  Zn_Tnp_IS1595 29 ayriktrglfqCkeCrkq 46
                   +  +kt+g+++C++C++q
     KIR65733.1 40 YVDTKTPGVYRCRACGAQ 57
                   567899*********998 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.12
  Zn_Tnp_IS1595  19 fvCPhCgsr 27 
                     +C +C s 
     KIR65733.1  97 IRCARCDSH 105
                    456666665 PP

>> DUF678  Protein of unknown function (DUF678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.011        15      55      69 ..      45      59 ..      36      62 .. 0.80
   2 ?    6.3   0.0    0.0077        11      55      70 ..      93     108 ..      81     111 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.011
      DUF678 55 kgntlrCaACgSsLt 69
                ++ + rC ACg +L 
  KIR65733.1 45 TPGVYRCRACGAQLY 59
                566789******996 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0077
      DUF678  55 kgntlrCaACgSsLtl 70 
                 + + +rCa C S L +
  KIR65733.1  93 RRTEIRCARCDSHLGH 108
                 567899****999966 PP

>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.72   9.9e+02       2      12 ..      48      58 ..      47      70 .. 0.74
   2 ?   11.9   0.0   0.00014       0.2      50      71 ..      91     112 ..      74     132 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.72
                  EEEETTTS-EE CS
  Yippee-Mis18  2 vfqCkkCktil 12
                  v++C+ C ++l
    KIR65733.1 48 VYRCRACGAQL 58
                  56788887776 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00014
                   TEEEEEEEETTT--EEEEEEEE CS
  Yippee-Mis18  50 kctystlsCkgCnsvlGwkYks 71 
                       ++++C+ C+s+lG +++ 
    KIR65733.1  91 GMRRTEIRCARCDSHLGHVFRG 112
                   367789************9985 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.009        12      38      53 ..      42      57 ..      37      58 .. 0.77
   2 ?    5.6   0.0    0.0098        14      13      35 ..      87     109 ..      85     120 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.009
  zinc_ribbon_10 38 eeleevkyrCpkCgal 53
                    +++++  yrC  Cga+
      KIR65733.1 42 DTKTPGVYRCRACGAQ 57
                    5667779*******86 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0098
  zinc_ribbon_10  13 detsaknryalICskChshnGla 35 
                     d+++ + r  + C  C sh G +
      KIR65733.1  87 DNSHGMRRTEIRCARCDSHLGHV 109
                     667778899999*******9987 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2     0.074     1e+02      27      33 ..      50      56 ..      43      58 .. 0.74
   2 ?    7.9   0.0     0.002       2.8      13      32 ..      84     103 ..      80     111 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.074
  zinc_ribbon_4 27 rCskCgh 33
                   rC +Cg+
     KIR65733.1 50 RCRACGA 56
                   8888886 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.002
  zinc_ribbon_4  13 eiddeklpakgvkvrCskCg 32 
                    ei+d+    +++++rC++C 
     KIR65733.1  84 EIEDNSHGMRRTEIRCARCD 103
                    5677777778999******5 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00027      0.38      28      49 .]      48      70 ..      22      70 .. 0.81
   2 ?    8.8   4.5    0.0012       1.7      15      37 ..      51     105 ..      44     125 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00027
         DZR 28 edrCpsCgek.vdpearfCpeCG 49
                 +rC +Cg++  +++++f  +CG
  KIR65733.1 48 VYRCRACGAQlYPSDTKFDSHCG 70
                799******98899999999998 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0012
         DZR  15 CseCgtklkavaa................................edrCpsCgek 37 
                 C +Cg++l +  +                                e+rC +C++ 
  KIR65733.1  51 CRACGAQLYPSDTkfdshcgwpsfddaipgavkeiednshgmrrtEIRCARCDSH 105
                 6666666543333555555555566666677777888888999988899999765 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0046       6.3       3      17 ..      49      63 ..      47      64 .. 0.78
   2 ?    4.0   0.0     0.024        34       6      17 ..      67      77 ..      67      78 .. 0.83
   3 ?    1.4   0.0      0.17   2.3e+02       2      11 ..      96     105 ..      95     107 .. 0.81
   4 ?   -3.2   0.1       4.7   6.4e+03       2       7 ..     120     125 ..     120     125 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0046
  zf-ribbon_3  3 vrCPnCGaplssddn 17
                 +rC +CGa+l ++d+
   KIR65733.1 49 YRCRACGAQLYPSDT 63
                 689999997788776 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.024
  zf-ribbon_3  6 PnCGaplssddn 17
                 ++CG+p s dd 
   KIR65733.1 67 SHCGWP-SFDDA 77
                 68***9.99985 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.17
  zf-ribbon_3   2 tvrCPnCGap 11 
                  ++rC +C+++
   KIR65733.1  96 EIRCARCDSH 105
                  689*999985 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 4.7
  zf-ribbon_3   2 tvrCPn 7  
                  t++C n
   KIR65733.1 120 TRHCVN 125
                  578865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1044.84
//
Query:       KIR65734.1  [L=342]
Description: ATP-dependent DNA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00075   19.6   0.0     0.0017   18.4   0.0    1.6  1  DNA_primase_S  DNA primase small subunit


Domain annotation for each model (and alignments):
>> DNA_primase_S  DNA primase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   9.5e-08    0.0017      25     126 ..     154     217 ..     140     261 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 9.5e-08
                    HHHHHHHHHHH-----GGGEEEEE--SEEEEEEE--TTEEES-HHHHHHHHHH..................................HCHHHHCT- CS
  DNA_primase_S  25 svavkvldellredfgfkdilwvfsgrrGfHcwvsdkdarpltdeeraaivnylnlyrplhpflsrsmlkivkpvveeiileeqdpfeikkllrll 120
                    + a+  l+ ll  ++g    ++ +sg+rG+H++ +    +++t+ +ra i+                                      ++l r+ 
     KIR65734.1 154 VAAAVELRALL-AELGAT-GWPKTSGGRGVHVYLRIAPRWTFTEVRRATIAL------------------------------------ARELERRR 211
                    33444444555.999998.9******************************93....................................44444444 PP

                    ------ CS
  DNA_primase_S 121 pdkslr 126
                    pd + +
     KIR65734.1 212 PDLVTT 217
                    444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2738.82
//
Query:       KIR65735.1  [L=98]
Description: hypothetical protein TK50_10345 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-05   23.5   0.0    7.5e-05   23.0   0.0    1.3  1  Ribosomal_L12  Ribosomal protein L7/L12 C-terminal domain
     0.0079   16.6   0.1     0.0088   16.5   0.1    1.2  1  DUF4733        Domain of unknown function (DUF4733)
  ------ inclusion threshold ------
      0.073   12.8   0.1       0.17   11.6   0.1    1.6  2  Neurensin      Neurensin


Domain annotation for each model (and alignments):
>> Ribosomal_L12  Ribosomal protein L7/L12 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.3e-08   7.5e-05      10      37 ..      66      93 ..      62      98 .] 0.89

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.3e-08
                   T-HHHHHHHHHHHH---HHHHHHHHTTT CS
  Ribosomal_L12 10 akKiaVIKaVreitglgLkeaKdlVeaa 37
                    +Ki+ IKa re+tg  L  aK+ Vea+
     KIR65735.1 66 GQKIQAIKAYREATGADLRTAKEAVEAM 93
                   57************************97 PP

>> DUF4733  Domain of unknown function (DUF4733)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.5e-06    0.0088      17      79 ..      12      68 ..       1      85 [. 0.72

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.5e-06
     DUF4733 17 lslvlaaallqpqplrpqravleelsaplelsqplsgllddyGilPkhPrprvvrpllsraqk 79
                + l+la +l+ p+  r  +a l e+   l+l      ++d  G+  + P p +vr +l+r qk
  KIR65735.1 12 VVLLLAGQLAGPRRDRVTEARLAEIDRRLQL------VMDHLGVVDRRPEPPGVREYLARGQK 68
                2345555556666555555555555555555......************************98 PP

>> Neurensin  Neurensin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   2.8e-05      0.17      47      84 ..       3      39 ..       1      52 [. 0.85
   2 ?   -1.7   0.0      0.36   2.1e+03       3      15 ..      58      78 ..      58      93 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.8e-05
   Neurensin 47 vgtlvlllGvtallvGylvprrlelvksegelvvvDkq 84
                ++++vl++Gv+ ll G l  +r   v  e  l  +D++
  KIR65735.1  3 IALIVLTIGVVLLLAGQLAGPRRDRV-TEARLAEIDRR 39
                789****************9999999.88888777765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.36
   Neurensin  3 GvrsYlhqf........Yedc 15
                Gvr+Yl +         Y + 
  KIR65735.1 58 GVREYLARGqkiqaikaYREA 78
                788888764444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 715.74
//
Query:       KIR65736.1  [L=1063]
Description: hypothetical protein TK50_10350 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-07   30.7  14.0    0.00052   20.4   2.0    3.9  4  FtsX            FtsX-like permease family
  ------ inclusion threshold ------
      0.071   13.4   0.2        6.6    7.1   0.0    2.8  2  DUF4112         Domain of unknown function (DUF4112)


Domain annotation for each model (and alignments):
>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2      0.37   3.3e+03      35      52 ..      16      33 ..       9      54 .. 0.59
   2 !   16.8   0.1     8e-07    0.0072       3      88 ..     324     405 ..     322     411 .. 0.69
   3 ?   -4.0   0.0         2   1.8e+04      30      49 ..     524     540 ..     522     552 .. 0.60
   4 !   20.4   2.0   5.8e-08   0.00052       3      91 ..     956    1048 ..     954    1051 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.37
        FtsX 35 iGlglgllaaqllsdvll 52
                ++ ++++l+a +l ++l 
  KIR65736.1 16 SAALVAALVAVALVTGLA 33
                444444444444333333 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 8e-07
        FtsX   3 eigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsi 88 
                 + ++lra G+ ++q+++l + e++l++l+a+++G     +aa++l   +  +   sel+    +   +++++ +   +l+a++l++
  KIR65736.1 324 QTALLRARGAARGQIAGLAVREAALVVLPAALLG---PPIAAEALRRIGRDQGW-SELTARGGTTLTWAVAAAAAAGCLVAMALPA 405
                 5689******************************...55555554445555433.5555555555555555555555555555555 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 2
        FtsX  30 lvalviGlglgllaaqllsd 49 
                 l+al++G   g+ +a+ l +
  KIR65736.1 524 LLALAVG---GSTLAWSLVT 540
                 4455555...5555555544 PP

  == domain 4  score: 20.4 bits;  conditional E-value: 5.8e-08
        FtsX    3 eigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfs....selkisidlitvliiivlllllallagllsiski 91  
                  e+++l +lG+  + +++ llte  +++ ++  +Gl++g+ +   +  ++    ++    +e+++ +++++v+ +++ lll al+++ + +s +
  KIR65736.1  956 ELAVLHTLGAPVRLLARALLTEQTFLAGIGVGVGLLVGAGVGATMAPLVVLTRSAdrpvPEAAFALPWLPVAGTALGLLLAALAFSTAIASGV 1048
                  89********************************9998887777444443333334688**********************999988877765 PP

>> DUF4112  Domain of unknown function (DUF4112)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00074       6.6      18      53 ..     455     490 ..     445     507 .. 0.85
   2 ?    2.9   0.1     0.014   1.3e+02      31      59 ..    1021    1048 ..    1016    1057 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00074
     DUF4112  18 ipgcglrfGldpiigliPvvGdvisallslylvlea 53 
                 + g g r+G+dp++   P++G +++a+++l+l+  a
  KIR65736.1 455 LAGAGGRLGVDPLLVAAPTLGVLAGAVVALRLLPPA 490
                 5567789**********************9998776 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.014
     DUF4112   31 igliPvvGdvisallslylvleakkaegl 59  
                  + ++Pv+G ++++ll+++ + +a  a g+
  KIR65736.1 1021 LPWLPVAGTALGLLLAALAFSTA-IASGV 1048
                  669*************9999888.55545 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1063 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 7557.38
//
Query:       KIR65737.1  [L=330]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-26   93.6   0.0    2.2e-26   93.0   0.0    1.3  1  ABC_tran        ABC transporter
    7.9e-06   25.6   0.1      0.027   14.1   0.0    2.6  2  AAA_25          AAA domain
    2.5e-05   24.2   0.5     0.0073   16.2   1.5    2.1  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    3.3e-05   23.4   0.0      0.029   13.8   0.0    2.1  2  SMC_N           RecF/RecN/SMC N terminal domain
    6.4e-05   22.7   1.8       0.22   11.2   0.0    2.4  2  AAA_30          AAA domain
    0.00014   22.2   0.4     0.0061   16.8   0.0    2.8  2  AAA_28          AAA domain
    0.00037   20.2   0.1    0.00068   19.3   0.1    1.4  1  AAA_29          P-loop containing region of AAA domain
    0.00041   20.4   0.2     0.0012   18.9   0.2    2.0  1  MMR_HSR1        50S ribosome-binding GTPase
    0.00054   19.9   0.0      0.001   19.0   0.0    1.4  1  RsgA_GTPase     RsgA GTPase
     0.0019   18.6   2.0     0.0048   17.3   2.0    2.0  1  AAA_16          AAA ATPase domain
     0.0021   18.3   3.1       0.03   14.5   0.0    3.0  3  AAA_33          AAA domain
  ------ inclusion threshold ------
      0.016   15.3   0.2      0.031   14.4   0.2    1.4  1  Dynamin_N       Dynamin family
      0.017   15.6   0.0      0.032   14.7   0.0    1.3  1  AAA_23          AAA domain
      0.035   13.5   0.0      0.073   12.4   0.0    1.5  1  FtsK_SpoIIIE    FtsK/SpoIIIE family
      0.043   14.1   0.1       0.13   12.5   0.1    2.0  1  AAA_22          AAA domain
      0.066   12.6   0.0        4.8    6.6   0.0    2.2  2  TniB            Bacterial TniB protein
      0.075   12.9   0.3          3    7.7   0.0    2.2  2  Ploopntkinase3  P-loop Nucleotide Kinase3
       0.11   12.0   0.1       0.64    9.5   0.0    2.0  2  FeoB_N          Ferrous iron transport protein B
       0.14   12.0   0.0       0.26   11.2   0.0    1.4  1  NACHT           NACHT domain
       0.16   12.5   1.7       0.37   11.3   0.2    2.3  3  AAA_18          AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   2.5e-29   2.2e-26       1     136 [.      57     208 ..      57     209 .. 0.91

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 2.5e-29
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH.............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx.............. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren.............. 79 
                 l+ ++l + +ge+vaivG +G+GKStLl++l+gl  pt+G  ++ + dl      ++l+  r+  g++ q+   +l p lt+ en              
  KIR65737.1  57 LQGLDLVIDRGELVAIVGASGSGKSTLLNILSGLDAPTAGIARVAEYDLLAmsarRRLSYRRRMAGFVWQQtgRNLLPYLTALENvelpmrlagrrsrr 155
                 6788999***********************************99999998889877777888888999999999********************98776 PP

                 HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  ++e++ ++l+ +g  +++d++     ++LSgG++qr a+a a++++p++l++DEpt
  KIR65737.1 156 GRRERARELLDLVGVGHCADRRP----AQLSGGEQQRCAVAVAVANDPEVLFADEPT 208
                 66667888999999888888887....*****************************9 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     3e-05     0.027      29      50 ..      63      84 ..      58     168 .. 0.92
   2 !    9.0   0.0    0.0011      0.96     159     188 ..     210     239 ..     198     241 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3e-05
      AAA_25 29 llpagelallaGapgtGKttla 50
                ++ +gel++++Ga+g+GK+tl+
  KIR65737.1 63 VIDRGELVAIVGASGSGKSTLL 84
                799*****************97 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0011
      AAA_25 159 ensnsdvgalvealeriarrtgaavllvhH 188
                 e +++  +++++al++i +++g++v++v H
  KIR65737.1 210 ELDEATGAEVFAALRQINAELGVTVVVVTH 239
                 445555699********************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.5   8.1e-06    0.0073       2      22 ..      70      90 ..      69     105 .. 0.88
   2 ?    5.0   0.0      0.02        18     206     298 ..     142     240 ..     112     244 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8.1e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                 +++G+ gsGKS+LL +l++l
  KIR65737.1 70 VAIVGASGSGKSTLLNILSGL 90
                68****************999 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.02
      AAA_21 206 eeliasvderlrer........gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsr.ngaQvil 294
                 +el+++ + r  +r         + ++  g+  ++ +++lS G ++  a+++a++ ++    +l+ DEp   L+ +  ++++  l  ++ +  g+ v++
  KIR65737.1 142 VELPMRLAGRRSRRgrrerareLLDLVGVGHCADRRPAQLSGGEQQRCAVAVAVANDP---EVLFADEPTGELDEATGAEVFAALrQIN-AeLGVTVVV 236
                 33333333333333444444477777778888889999*****999989999999999...9*******99999966666665554333.358999999 PP

      AAA_21 295 tTHS 298
                 +TH+
  KIR65737.1 237 VTHD 240
                 9997 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0022         2      26      42 ..      69      85 ..      60      91 .. 0.86
   2 !   13.8   0.0   3.3e-05     0.029     136     213 ..     180     255 ..      96     261 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0022
                EEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlld 42
                + aivG+ GSGKs ll+
  KIR65737.1 69 LVAIVGASGSGKSTLLN 85
                679**********9986 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.3e-05
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvgvtk 213
                 +LSgGe++ +a+a+ +A    +p+ l+  De   +LDe+  ++v   l++ + +  + ++v+++++ + ++++++v ++ 
  KIR65737.1 180 QLSGGEQQRCAVAVAVA---NDPEVLFA-DEPTGELDEATGAEVFAALRQINAElgVTVVVVTHDHAVATQVRRTVAIRD 255
                 8**********999866...57888775.********************8887755789999****99999999998875 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00024      0.22      17      43 ..      66      92 ..      58     118 .. 0.77
   2 !   10.1   0.8   0.00054      0.48      34     100 ..     219     290 ..     185     309 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
      AAA_30 17 gdrvavltGpAGtGKttalkalreawe 43
                +  +++++G+ G+GK+t+l+ l  + +
  KIR65737.1 66 RGELVAIVGASGSGKSTLLNILSGLDA 92
                446999*************99876655 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00054
      AAA_30  34 alkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk.....grarlepgtllivDEagmv 100
                 + +alr++ ++ g +v+++++ +++A ++++ + i+  ++a+ ++r++     g ++l +++  + D ag +
  KIR65737.1 219 VFAALRQINAELGVTVVVVTHDHAVATQVRRTVAIRDGRTASEVRRTArigadGSTELVSEEYAVLDRAGRM 290
                 568899999999***********************7777777777777688886677888888888888766 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.8e-06    0.0061       2      30 ..      70     103 ..      69     133 .. 0.83
   2 ?    2.9   0.0      0.13   1.2e+02     105     159 ..     185     240 ..     135     243 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.8e-06
      AAA_28   2 ivitGgestGKTtlleaLa.....argypvvpEa 30 
                 ++i+G++++GK+tll+ L+       g+  v+E+
  KIR65737.1  70 VAIVGASGSGKSTLLNILSgldapTAGIARVAEY 103
                 89*****************664333377777776 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.13
      AAA_28 105 rekrydlvfllppapei.dddgeRre.dleereaiderlrealrelgipviivpsgd 159
                 +++r +  + ++++pe+   d+   e d++  +++ ++lr++  elg+ v++v + d
  KIR65737.1 185 EQQRCAVAVAVANDPEVlFADEPTGElDEATGAEVFAALRQINAELGVTVVVV-THD 240
                 456777777888888777444444443888899999**************999.655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   7.6e-07   0.00068      16      39 ..      61      84 ..      55      95 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 7.6e-07
      AAA_29 16 tieidlkgatlltGpsGsGKSTll 39
                ++ id+ + + ++G+sGsGKSTll
  KIR65737.1 61 DLVIDRGELVAIVGASGSGKSTLL 84
                5667866699*************9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   1.3e-06    0.0012       2      27 ..      70      95 ..      69     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.3e-06
                EEEEESTTSSHHHHHHHHHTSTEEES CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgekaivs 27
                vaivG + +GKStL+n l+g  a ++
  KIR65737.1 70 VAIVGASGSGKSTLLNILSGLDAPTA 95
                89****************99433332 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.2e-06     0.001      95     122 ..      62      90 ..      43     103 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.2e-06
                  HHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  95 ellkd.ktsvlvGqSGvGKStLinallpe 122
                   +++  +++++vG SG GKStL+n l + 
   KIR65737.1  62 LVIDRgELVAIVGASGSGKSTLLNILSGL 90 
                  555555999***************99874 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   2.0   5.4e-06    0.0048      21     107 ..      64     190 ..      53     310 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.4e-06
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekd..........................ggiflrgkcdqlesaipysalaqalareellrqlldeaesae 93 
                  +r+elv ++G+sG+GKs+l++ l   l +                            + f+++++ ++     ++++++al++ el   l+ + + + 
  KIR65737.1  64 IDRGELVAIVGASGSGKSTLLNILS-GLDAPtagiarvaeydllamsarrrlsyrrrMAGFVWQQTGRN-----LLPYLTALENVELPMRLAGRRSRRG 156
                 46779****************8888.4555533444444444444444444444332233333333333.....3334444444444444444433333 PP

      AAA_16  94 leawrekleeala....................a 107
                 +++ +++l++ ++                    a
  KIR65737.1 157 RRERARELLDLVGvghcadrrpaqlsggeqqrcA 190
                 3333333444444666665544444444444440 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1       0.2   1.8e+02     106     122 ..      11      27 ..       9      38 .. 0.84
   2 !   14.5   0.0   3.3e-05      0.03       1      40 [.      69     127 ..      69     166 .. 0.63
   3 ?    0.0   0.1      0.97   8.7e+02      85     117 ..     220     252 ..     199     268 .. 0.60

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.2
      AAA_33 106 tdeetlkeRlakRaang 122
                 +d +tl++R a+Raa++
  KIR65737.1  11 PDLATLQRRAAQRAAER 27 
                 6899**********986 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.3e-05
      AAA_33   1 lvllvGlpGsGKstlaerl..lkklg..avllssdt...........lrrrlfg....t 40 
                 lv +vG++GsGKstl+  l  l + +    ++++ +           +rrr++g    +
  KIR65737.1  69 LVAIVGASGSGKSTLLNILsgLDAPTagIARVAEYDllamsarrrlsYRRRMAGfvwqQ 127
                 7899***********99885533333557777777766666555555555555554432 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.97
      AAA_33  85 rarflklarrlgvpvrivvvetdeetlkeRlak 117
                 +a+++++  +lgv v +v+ +   +t  +R+ +
  KIR65737.1 220 FAALRQINAELGVTVVVVTHDHAVATQVRRTVA 252
                 345555555666555555555555555555444 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   3.4e-05     0.031       1      22 [.      70      91 ..      70      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.4e-05
                EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlged 22
                +a+vG+  sGKS++ln L g d
  KIR65737.1 70 VAIVGASGSGKSTLLNILSGLD 91
                79****************9987 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.6e-05     0.032      20      39 ..      68      87 ..      54      89 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.6e-05
      AAA_23 20 gltlItGpNGaGKTTildAi 39
                 l++I+G  G+GK+T+l+ +
  KIR65737.1 68 ELVAIVGASGSGKSTLLNIL 87
                599**************966 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.1e-05     0.073      42      59 ..      70      87 ..      39      88 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.1e-05
                  EEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE 42 llvaGatgsGKStalntL 59
                  + ++Ga+gsGKSt ln L
    KIR65737.1 70 VAIVGASGSGKSTLLNIL 87
                  68*************965 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00014      0.13       5      26 ..      67      88 ..      64     242 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00014
      AAA_22  5 agilvvtGesGtGKTtllrrll 26
                  +++++G sG+GK+tll+ l 
  KIR65737.1 67 GELVAIVGASGSGKSTLLNILS 88
                56789************98765 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.036        33      36      63 ..      68      95 ..      63     120 .. 0.70
   2 ?    6.6   0.0    0.0053       4.8     117     167 ..     196     244 ..     161     251 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.036
        TniB 36 pnlllvGdsnnGKtmivekFarlhppek 63
                + + +vG s  GK+++++  + l+ p+ 
  KIR65737.1 68 ELVAIVGASGSGKSTLLNILSGLDAPTA 95
                5679************987766665555 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0053
        TniB 117 elkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvGteealr 167
                 + +++vL  DE    l     +  e+++al++++ el +++v+v  ++a++
  KIR65737.1 196 ANDPEVLFADEPTGEL--DEATGAEVFAALRQINAELGVTVVVVTHDHAVA 244
                 5566777777766655..5566789*******************9888875 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0034         3       5      23 ..      69      87 ..      66     109 .. 0.83
   2 ?    3.2   0.1     0.081        72     107     149 ..     226     270 ..     210     300 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0034
  Ploopntkinase3  5 liylvGqPGaGkstlmael 23
                    l+ +vG+ G+Gkstl+  l
      KIR65737.1 69 LVAIVGASGSGKSTLLNIL 87
                    7889***********9766 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.081
  Ploopntkinase3 107 leaGyevtlalldhdqadawrkarskkl..grvqneswvkgrlsa 149
                     ++a   vt++++ hd+a a + +r+ ++  gr+ +e    +r+ a
      KIR65737.1 226 INAELGVTVVVVTHDHAVATQVRRTVAIrdGRTASEVRRTARIGA 270
                     344445566666666655555555555511666666666677665 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00071      0.64       3      25 ..      70      92 ..      68     101 .. 0.88
   2 ?   -0.4   0.0       0.8   7.2e+02     115     143 ..     211     239 ..     209     250 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00071
                EEEEESTTSSHHHHHHHHHTTSE CS
      FeoB_N  3 valvGnpnvGkttlfnaltgakq 25
                va+vG   +Gk+tl+n l+g + 
  KIR65737.1 70 VAIVGASGSGKSTLLNILSGLDA 92
                89*****************9875 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.8
                 HHHHHHTTEEE-HHHHHHHHTS-EEEEBT CS
      FeoB_N 115 ideaekkgieidlkkLsekLgvpvvktsa 143
                 +dea+ +++   l++++++Lgv vv ++ 
  KIR65737.1 211 LDEATGAEVFAALRQINAELGVTVVVVTH 239
                 57777788888889999999999997764 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00029      0.26       2      19 ..      69      86 ..      68      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00029
                CEEEEC-TTTCHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqk 19
                lv++ G++GsGK+tLl  
  KIR65737.1 69 LVAIVGASGSGKSTLLNI 86
                799************975 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00041      0.37       1      19 [.      70      88 ..      70     119 .. 0.89
   2 ?   -2.3   0.1       6.7     6e+03     105     123 ..     143     159 ..      97     166 .. 0.71
   3 ?   -1.9   0.0         5   4.5e+03      47      80 ..     206     237 ..     193     252 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00041
      AAA_18  1 IlltGtpGvGKttlakeLs 19
                +++ G++G+GK+tl + Ls
  KIR65737.1 70 VAIVGASGSGKSTLLNILS 88
                689************9997 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 6.7
      AAA_18 105 elleRlekRgyeeakiken 123
                 el  Rl+ R+ +  ++  +
  KIR65737.1 143 ELPMRLAGRRSRRGRR--E 159
                 5555777777666663..3 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 5
      AAA_18  47 deskrldedkldklldaleenssaleegknlvid 80 
                 +++ +lde   ++++ al+++++  e g ++v+ 
  KIR65737.1 206 EPTGELDEATGAEVFAALRQINA--ELGVTVVVV 237
                 46788888888899999999987..444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 2622.78
//
Query:       KIR65738.1  [L=150]
Description: GNAT family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-17   64.5   0.0    1.2e-17   64.2   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.3e-12   47.2   0.0    3.2e-12   46.7   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.2e-10   41.4   0.0    2.1e-10   40.6   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    5.1e-05   23.2   0.1      8e-05   22.5   0.1    1.2  1  FR47             FR47-like protein
    0.00023   21.3   0.0     0.0004   20.5   0.0    1.3  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    0.00054   20.7   0.0    0.00064   20.4   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
     0.0014   18.7   0.0     0.0022   18.1   0.0    1.5  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.058   13.1   0.0    1.9  1  Acetyltransf_8   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   5.3e-21   1.2e-17      17     117 .]      36     139 ..      19     139 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 5.3e-21
                     HHHHHHHHHHHHHSTTCEEEEEEETTEEEEEEEEEEEET...TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHH CS
  Acetyltransf_1  17 edaseeefeesfsleaegllvaeedgeliGfisllkipd...ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaa 108
                      da e++f+++  ++ ++l+va ++g ++G+++++ ip    +  ++  ie + V++++rg+GlG ++++ ++++ar++g+  + l+++++ + a
      KIR65738.1  36 DDAYERAFADISADPRNHLVVADDGGVVVGCLQITYIPGlgrHGAQRSLIEAVRVRSDRRGQGLGGEMIRWAIDQARQRGCALVQLTTDKSRTEA 130
                     34445558888888888*************************9999***********************************999*********** PP

                     HHHHHHTTE CS
  Acetyltransf_1 109 irlYeklGF 117
                     +r+Y klGF
      KIR65738.1 131 HRFYLKLGF 139
                     ********9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   1.4e-15   3.2e-12       2      75 ..      51     140 ..      50     141 .. 0.77

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 1.4e-15
                     TEEEEEEEETTEEEEEEEEEEES.........TCTEE...EEE-GGGTTSSHHHHHHHHTT.....SEEEEEEEEETHH..HHHHHHHHTTEE CS
  Acetyltransf_7   2 kgevfVaeddgkivGfialslld.........aeitr...laVdpeyrgkGiGraLleaae.....kgiileqlelnae..kaikfYeklGFe 75 
                     ++++ Va+d+g +vG++ ++ +                  + V+ + rg+G+G ++++ a+     +g+ l+ql+++++  +a++fY klGF+
      KIR65738.1  51 RNHLVVADDGGVVVGCLQITYIPglgrhgaqrS---LieaVRVRSDRRGQGLGGEMIRWAIdqarqRGCALVQLTTDKSrtEAHRFYLKLGFV 140
                     6789999999******99999999987665533...144699****************622345668998665555332569**********8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   9.2e-14   2.1e-10      24     110 ..      45     143 ..      31     147 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 9.2e-14
  Acetyltransf_10  24 erieegealllvaeeggkivGviel.rdgs.........hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklG 105
                      +  ++++++l+va++gg +vG++++ +  +          i+ + V+++ rgqG+g +++  ++++a+++g +l +lt ++s+ +a +fY klG
       KIR65738.1  45 DISADPRNHLVVADDGGVVVGCLQItYIPGlgrhgaqrsLIEAVRVRSDRRGQGLGGEMIRWAIDQARQRGCALvQLTTDKSRtEAHRFYLKLG 138
                      33369999************99955433335555567769999***************************************99********** PP

  Acetyltransf_10 106 Fkavg 110
                      F+a  
       KIR65738.1 139 FVASH 143
                      *9974 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   3.6e-08     8e-05      20      79 ..      81     141 ..      76     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.6e-08
                 TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EE.EEEETT-HHHHHHHHHHT-EE CS
        FR47  20 dggelgalqvlpehrrrGlgsrlvkalakeiaergktvl.lvvvasNtpsirlyeklGfek 79 
                 + + + a+ v+ + r++Glg+ +++  + + ++rg  ++ l +  s t++ r+y klGf +
  KIR65738.1  81 QRSLIEAVRVRSDRRGQGLGGEMIRWAIDQARQRGCALVqLTTDKSRTEAHRFYLKLGFVA 141
                 557899*****************************8765266778899***********76 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.8e-07    0.0004       3     125 ..       7     139 ..       6     141 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.8e-07
                     EEE-GGGHHHHHHHHHH.HTT----H....HHHHHHHHHHT......TSEEEEEEETTEEEEEEEEEEEEEEE.TTEEEEEEEEEEEEE-CCGTT CS
  Acetyltransf_9   3 relteedldevlellky.aFqdeespl..eeireyfrklle......esrvlgaedngelvgqlallplelnv.pGktlkaagvtgVavapehrg 87 
                     re+  +dl+++l+ll+  + ++ ++    +    ++++ +       +++ ++a d+g +vg+l+++       +G++     + +V v  + rg
      KIR65738.1   7 REAVRADLPAILALLADdVLGRARDVGevD---DAYERAFAdisadpRNHLVVADDGGVVVGCLQITYIPGLGrHGAQ--RSLIEAVRVRSDRRG 96 
                     777788888888888752555555555442...33333333344455578888888999*****99754433224433..3789*********** PP

                     S-HHHHHHHHHHHHHHHTT--EEEE--.....SSHHHHHTTT- CS
  Acetyltransf_9  88 rgvlskLlaraleemreegqplsllfP.....ssipiYrrfGy 125
                     +g+  ++++ a++++r++g  l+ l+       + ++Y ++G+
      KIR65738.1  97 QGLGGEMIRWAIDQARQRGCALVQLTTdksrtEAHRFYLKLGF 139
                     **************************99876444699999998 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.9e-07   0.00064       2     137 ..       4     139 ..       3     140 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.9e-07
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmrylpepltleeaeewlerawaeeseeegygwaivlkdtgv.iGsvglrdleeedee.....aelgymlaps 90 
                     +++r++  +Dl+a+++l++d  + r     +++ e ++ +era+a+ s++    +++   d+gv +G+  ++++++  +      +    +++++
      KIR65738.1   4 VIFREAVRADLPAILALLADDVLGR----ARDVGEVDDAYERAFADISADPRNHLVV-ADDGGVvVGCLQITYIPGLGRHgaqrsLIEAVRVRSD 93 
                     57899999******99***998888....6788888888888877665555544555.6777777*******88887666878754444778888 PP

  Acetyltransf_3  91 fwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                      +g+G++ e+ r +++ a ++ g   +  ++dk+ +   r + klGf
      KIR65738.1  94 RRGQGLGGEMIRWAIDQA-RQRGCALVQLTTDKSRTEAHRFYLKLGF 139
                     9*****************.7777999********************9 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     1e-06    0.0022      24      60 ..      82     118 ..      54     123 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1e-06
  Acetyltransf_CG  24 vldfthTeVpeelrGkGiAkkLvkaalddareeglkv 60 
                      +  ++ + V    rG+G+++++++ a+d+ar++g   
       KIR65738.1  82 RSLIEAVRVRSDRRGQGLGGEMIRWAIDQARQRGCAL 118
                      5567788999***********************9765 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.6e-05     0.058      88     142 ..      91     144 ..      10     146 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.6e-05
                     SHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEE CS
  Acetyltransf_8  88 eaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekeke 142
                       ++rg+gl+ +++r  ++++ ++ +++ v +  d + ++a+r++ k+Gf+   e
      KIR65738.1  91 RSDRRGQGLGGEMIRWAIDQARQR-GCALVQLTTDKSRTEAHRFYLKLGFVASHE 144
                     567899*********999998877.*************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1126.80
//
Query:       KIR65739.1  [L=158]
Description: ion transport integral membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.7e-15   54.8   3.4    9.4e-15   54.4   3.4    1.2  1  Ion_trans_2  Ion channel
    0.00022   20.5   0.2    0.00033   20.0   0.2    1.3  1  Ion_trans    Ion transport protein


Domain annotation for each model (and alignments):
>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   3.4     1e-18   9.4e-15       3      71 ..      30      94 ..      27     102 .. 0.82

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 1e-18
                 HHHTCHHHHHHHHT....T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  3 lllvlifgaviysleegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalfla 71
                 ll +++++ viys    +e  s +d++++++vt +T+GYGdi+p+t agr+++ ++i + ++l++ +++
   KIR65739.1 30 LL-MIVVAGVIYSH---VEHKSATDSVWWAVVTASTVGYGDISPTTGAGRALAALLISTMVLLVIPLIT 94
                 44.55555555555...5999********************************9999999888876654 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   3.7e-08   0.00033     176     236 ..      45     100 ..      18     102 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.7e-08
                 SSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 176 FdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadn 236
                  ++  ++++w++++++t+g+gdi ++t  ++     ++ +++i  +++l++ l+ a  a++
  KIR65739.1  45 HKSATDSVWWAVVTASTVGYGDISPTTGAGR-----ALAALLISTMVLLVIPLITAHFASQ 100
                 5567789************************.....9999999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1153  (0.0643092); expected 358.6 (0.02)
Passed bias filter:                      760  (0.0423894); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1080.13
//
Query:       KIR65740.1  [L=527]
Description: transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.4e-41  140.1   0.0    1.5e-40  139.5   0.0    1.3  1  Abhydrolase_1  alpha/beta hydrolase fold
    5.3e-24   84.3   0.0    1.8e-23   82.6   0.0    1.9  2  Abhydrolase_4  TAP-like protein
    0.00021   20.7   0.0    0.00042   19.6   0.0    1.5  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.046   13.3   0.0      0.091   12.4   0.0    1.4  1  Abhydrolase_8  Alpha/beta hydrolase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.5   0.0   3.3e-44   1.5e-40       1     253 [.     116     498 ..     116     501 .. 0.87

  Alignments for each domain:
  == domain 1  score: 139.5 bits;  conditional E-value: 3.3e-44
                    SEEEEE-STTTCGGG...........GTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB..................CHH.............. CS
  Abhydrolase_1   1 pvlvilhGlpgssdv...........waerglapaLakdgfdvillDlrGvgySspapacin.................ddy.............. 54 
                    ++lvi++G+pg+s+v           +   gl+p   + +fd++++D+rGv++Ssp ++  +                 + +              
     KIR65740.1 116 GSLVINPGGPGGSGVdtavylsfgptFG--GLPPSVTE-RFDIVGFDPRGVARSSPVKCISDadldasfgydpdprsaaS-Fdgfvalnerigrgc 207
                    589********99998888887775333..47777777.*******************7555888877666666555550.055566666666666 PP

                    ...........SHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHH CS
  Abhydrolase_1  55 ...........gtasvaddldrildalgddkltlvGhSmGGmialayaaeyperVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnp 139
                               gt   a+d+d++++a gd+klt++G+S+G++++++ya++yp+rV+alvl+ga+dp  +l    + qak+f ++fd++  +ca n+
     KIR65740.1 208 gdkygdqlplyGTEQAARDMDAVRAAVGDEKLTYLGYSYGTLLGATYAQLYPQRVRALVLDGAVDPTQDLVAGSEGQAKGFERAFDNFTRWCAANA 303
                    66666666666*********************************************************************************9988 PP

                    H.HHHHHCCSCHHHHHHHHHHHHHH..................................................HCHHHCCHHHHHHHCHHHHHH CS
  Abhydrolase_1 140 a.gplladelaaleqrhrlvdalkf..................................................pdkskrfpssgsdnasslatg 184
                    + +pl+ d  aa+++  +  +a+++                                                  +d +  ++ +g + +  +a  
     KIR65740.1 304 GrCPLAPDARAAVTSAID--KAKVSpvkaadgreatagwvfyavisslytesgwqelahaierldggdpgevfrlADAYAGRDADGKYSNLFDANL 397
                    559*************87..566668999**********************************************999999999888888888888 PP

                    HHHHHHHHHHCCHHHHHHHHHC................................THHHHS.EEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEET CS
  Abhydrolase_1 185 alksieqwpttdsaklllrlre................................lknvla.ptlvisgtsDplvppkaledlaqllpkkrlvvisd 247
                    a+++ ++ ++++s +++++l++                                +k+v a p++v+++t Dp++p+++   la+ l   r+++ ++
     KIR65740.1 398 AVNCTDE-TAKPSVQRIRELQSqwrqtyplfgpalavgmlgcaewpgardpyptGKAVGApPIVVVGTTGDPATPYEQTATLASMLGVGRVLTWEG 492
                    8777776.56777788888888999999999999999*****************9999999**********************9999999****** PP

                    CSSSHH CS
  Abhydrolase_1 248 agHlaf 253
                    +gH+a+
     KIR65740.1 493 EGHTAY 498
                    ***998 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.98   4.4e+03      35      48 ..     262     275 ..     255     321 .. 0.74
   2 !   82.6   0.0   3.9e-27   1.8e-23       1     103 []     424     524 ..     424     524 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.98
  Abhydrolase_4  35 apvLllqnerDpaT 48 
                    +++L+l++  Dp+ 
     KIR65740.1 262 VRALVLDGAVDPTQ 275
                    67899999999864 PP

  == domain 2  score: 82.6 bits;  conditional E-value: 3.9e-27
  Abhydrolase_4   1 spvfgaalaesllsCagwpvspqrprdestakgaapvLllqnerDpaTPyegakklakalggavlvtvegeGHgalaagntCvdkavdaYLltGel 96 
                    +p+fg ala ++l Ca wp ++++ +  +   ga+p+ ++++++DpaTPye++++la+ lg ++++t+egeGH+a+  + +Cv +avdaYL + ++
     KIR65740.1 424 YPLFGPALAVGMLGCAEWPGARDPYPTGKA-VGAPPIVVVGTTGDPATPYEQTATLASMLGVGRVLTWEGEGHTAY-PQTSCVTDAVDAYLISLTV 517
                    5899***************98877766655.599******************************************.79***************** PP

  Abhydrolase_4  97 paddtvC 103
                    p+++  C
     KIR65740.1 518 PREGLRC 524
                    ***9998 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   9.4e-08   0.00042      40     110 ..     205     271 ..     204     322 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 9.4e-08
  Hydrolase_4  40 rGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPa 110
                  rG G   g +  +  +++  +D++a+    ++  ++++l+ lG S G l+ ++y++ yp++v++l+l +++
   KIR65740.1 205 RGCGDKYGDQLPLYGTEQAARDMDAV----RAAVGDEKLTYLGYSYGTLLGATYAQLYPQRVRALVLDGAV 271
                  78888888888888999999999776....66667999*****************************8865 PP

>> Abhydrolase_8  Alpha/beta hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     2e-05     0.091     101     142 ..     230     270 ..     219     282 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2e-05
  Abhydrolase_8 101 lratsvpgqhlallgHSYGSlvaslAlddaaseVsdvvlyGS 142
                    +ra  v +++l+ lg SYG l+ +  ++  +++V   vl G+
     KIR65740.1 230 VRAA-VGDEKLTYLGYSYGTLLGATYAQLYPQRVRALVLDGA 270
                    4444.5899*****************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3535.17
//
Query:       KIR65741.1  [L=370]
Description: ATP-dependent DNA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-36  124.9   0.0    4.3e-36  124.5   0.0    1.1  1  DNA_ligase_A_M   ATP dependent DNA ligase domain
    8.5e-16   58.4   0.0    1.8e-15   57.3   0.0    1.5  1  DNA_ligase_A_C   ATP dependent DNA ligase C terminal region
    0.00054   20.3   0.0    0.00083   19.7   0.0    1.3  1  RNA_ligase       RNA ligase
     0.0015   18.4   0.0         12    5.6   0.0    3.1  3  mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain


Domain annotation for each model (and alignments):
>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   0.0   9.6e-40   4.3e-36       1     204 []      11     205 ..      11     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: 124.5 bits;  conditional E-value: 9.6e-40
                     -EEEEEESCHHHHHHHTTTSEEEEEEEESSEEEEEEEETTEEEEEETTS-B-GGGCHHHHHHHHHHBSTTESEEEEEEEEEEEETTT...TCBEH CS
  DNA_ligase_A_M   1 pmLAeslksiekalkkleekafivEiKyDGeRaqvhkegdkvklfSRrlkditaakpelvkalkeafkkdeksvilDGElvavdket...geilp 92 
                     pmLA+ ++ + +         +++E K+DG R  v ++gd+v+l SR +k++t+++pe+v+++ ++++++   + +DGEl+++ ++    +  l+
      KIR65741.1  11 PMLAKAVSRLPT------DPGTTYEPKWDGFRCIVFRDGDEVELASRGGKTMTRYFPEVVEQALRQLPER---CAVDGELIVIRRDGpdgQPRLD 96 
                     777777775422......456679*************************************999999875...*********7665411145678 PP

                     HHHHCHHH.HCHCCTHHHHHHSEEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BTTTEEE--EEEESSHHHHHHHHHHHHHTTECEEEEEE CS
  DNA_ligase_A_M  93 fqklasrk.kkkkkveeklkeaelclfvFDiLyldgesltdeplkeRrklLeeilkesedrvelaeslevkdveeleelleeaiseglEGlvvKn 186
                     f+ la+r+  ++++v+ +++++++ +++FD+L++d+e lt +p+ +Rr+ Le++l     r  ++ +++++d e+++++++ +  +gl+Gl++K 
      KIR65741.1  97 FELLAQRIhPAASRVKLLAETTPADFVAFDLLAIDDELLTAQPYPQRRARLERAL--AGVRPPVHVTQVTTDPETARRWFDVFEGAGLDGLIAKP 189
                     99999**9888999*****************************************..888899999***************************** PP

                     TT-CC-TTCEEEEEEEEE CS
  DNA_ligase_A_M 187 pdskYepgkrsknwlKvK 204
                     +d +Yepgkr   + KvK
      KIR65741.1 190 ADLPYEPGKR--LMAKVK 205
                     **********..****99 PP

>> DNA_ligase_A_C  ATP dependent DNA ligase C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0     4e-19   1.8e-15       2      99 .]     223     333 ..     222     333 .. 0.79

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 4e-19
                     GGSEEEEEEEEEE.TTEEEEEEEE-SS--HHHHHHHHHHHGGGEEC..TTCE.SS---HHHHTT.....EE..........E-TT-EEEEEESEE CS
  DNA_ligase_A_C   2 gglvgslllgvyd.dgkleyvgkvgtGfsdaeleelrkklkelerk..kppf.aekvpeeekrd.....vW..........vePelvveVkfaei 77 
                     g +vgslllg+yd dg l+++g v++ f++a+++el ++l ++++   ++p+ ++++++ ++       +W          ++Pelv+eV ++ +
      KIR65741.1 223 GPVVGSLLLGLYDdDGVLHHIG-VSSSFTAARRRELLDELAPYREVgpDHPWvHGDHERGQR-IpggvsRWtgtknlewepLRPELVAEVGYDAM 315
                     5689*********9999****9.7777*************9554432266664444333333.2477887788888888*************988 PP

                     ECTSSSTTEECT-E.EEEE-TTS CS
  DNA_ligase_A_C  78 tasgkykaslRfPr.fkrlReDk 99 
                     + +     +lR+++ f+r+R+D+
      KIR65741.1 316 EGD-----RLRHTArFVRWRPDR 333
                     888.....6***988******96 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.9e-07   0.00083       8     161 .]      31     205 ..      27     205 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.9e-07
                 E-SSEEEEEEEETT.EEEEETTCEB.CTTTHHHHHHTHHHHHHHHHHHHH..ECCEEEEEEEES.SS..TTSS.......................... CS
  RNA_ligase   8 KlDGtnfriylvke.vgvasRsqil.pfgeekfkefkrwaaalrkklkeklaneelilyGElighsikygglpk......................... 79 
                 K DG ++ ++ + + v +asR++   +         ++  +  +++  ++l  e+ ++ GEli   i+++g p+                         
  KIR65741.1  31 KWDGFRCIVFRDGDeVELASRGGKTmT---------RYFPEVVEQA-LRQLP-ERCAVDGELIV--IRRDG-PDgqprldfellaqrihpaasrvklla 115
                 889999999998445999***999932.........3333334444.45556.569********..76666.333456777888888888888999999 PP

                 .....EEEEEEEEEEECTTBECE--HHHH.HHHHHCCT..B..EEEEE.SSHHHHHCCC....HHHHTC--EEEEEESSSSBE.TTEBSEEEEE CS
  RNA_ligase  80 .....efyvFdifdirdkeeqrylspdev.ealakglg..tvpvlyegkflaaeellel...llskgnkrEGlVikpeselyk.nkgraifKvk 161
                      +f++Fd+++i+d e  +  ++ ++   l++ l     pv  + ++++ e++++    +  +g    Gl+ kp++  y+  k r ++Kvk
  KIR65741.1 116 ettpaDFVAFDLLAIDD-ELLTAQPYPQRrARLERALAgvRPPVHVTQVTTDPETARRWfdvF--EGAGLDGLIAKPADLPYEpGK-RLMAKVK 205
                 99999**********84.455555555554455554435545555333333433333334433..667888999999998888554.8888876 PP

>> mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0034        15      23      84 ..      31      86 ..      24     105 .. 0.82
   2 !    5.6   0.0    0.0028        12      91     127 ..     120     156 ..     107     173 .. 0.84
   3 !    3.8   0.0    0.0098        44     171     188 ..     182     199 ..     179     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0034
                     EESSEEEEEEEEECTEEEEEEETTS-EEEESSST-BTTSSSSTCTSBGGSEEEEEEEEEEEC CS
  mRNA_cap_enzyme 23 KaDGiRylmllteeeegvylidRenevyrvenlrfprekdkeklekvldetllDgElvidkv 84
                     K DG R++++ + +  +v l  R  +        fp+  + + l+++ +   +DgEl++ + 
       KIR65741.1 31 KWDGFRCIVFRDGD--EVELASRGGKTMTRY---FPEVVE-QALRQLPERCAVDGELIVIRR 86
                     78********9999..799999998876554...888774.55899***********99665 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0028
                      EEEEEEEEEEETTEEGTTSBHHHHHHHHHHHTHHHHH CS
  mRNA_cap_enzyme  91 lryliyDivaingvtvaeeplskRleilkkelikprn 127
                        ++ +D++ai+   ++ +p+ +R + l++ l  +r 
       KIR65741.1 120 ADFVAFDLLAIDDELLTAQPYPQRRARLERALAGVRP 156
                      56999*************************9988775 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.0098
                      EEEEEEEESSSB--SEEE CS
  mRNA_cap_enzyme 171 sDGLIfqpvkepyvagrd 188
                       DGLI +p + py++g+ 
       KIR65741.1 182 LDGLIAKPADLPYEPGKR 199
                      6**************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2409.67
//
Query:       KIR65742.1  [L=70]
Description: hypothetical protein TK50_10390 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 556.39
//
Query:       KIR65743.1  [L=140]
Description: polyketide cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-15   58.1   3.1    1.2e-15   58.0   3.1    1.0  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
    1.8e-07   31.4   0.7      3e-07   30.7   0.7    1.4  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
  ------ inclusion threshold ------
      0.034   14.4   0.1      0.041   14.1   0.1    1.1  1  AHSA1            Activator of Hsp90 ATPase homolog 1-like pro


Domain annotation for each model (and alignments):
>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   3.1     2e-19   1.2e-15       3     141 ..       2     136 ..       1     138 [. 0.81

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 2e-19
                      EEEEEEEESS-HHHHHHHHTTTTGGGGT-TTEEEE.ECSESTSSS.TTTEEEEECCCSSEEEEEEEEEETTTTEEEEEEE.SSS-TSEEEEEEE CS
  Polyketide_cyc2   3 kvtvsvviaappekVwalvsdfenwprWhpevarv.eleggggpa.rgvegtvrvggrgtvreelvevdpegrllsyrivkpvpvanyvatwtv 94 
                      ++++ ++i+a++e+Vw++ sd + wp+W  +v+r+ +le  +gp+ +g+  ++   g++++++++vev++ + ++++     +p+ + ++  ++
       KIR65743.1   2 RFEAVTEIDADAERVWEVQSDVDRWPEWTASVRRAcRLE--PGPLtVGSTARLEQPGLRPAVWRVVEVEA-PYRFAWVS--ALPGVRSRGDHRI 90 
                      578899***************************772555..8998555556666666699*********7.99999999..7************ PP

                      EECCET.EEEEEEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  95 tpdggg.trvtwtgefdagplggpfekpaaakavkgdleagLerLkar 141
                       p +gg  rv+ + +   gpl+ p+       +++++l+   e+L++r
       KIR65743.1  91 VPLPGGgVRVELSLDQS-GPLAVPVGWRY-GGLIRRYLRLEAEGLRRR 136
                      ***966599****9777.46665554443.567777777777777776 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.7     5e-11     3e-07       1     114 [.       9     114 ..       9     127 .. 0.73

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 5e-11
                     ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE...E..EEECSTTSSC.EEEEEEEEEEETTTEEECTTCCCCCEEEEEEEECTECCEEEC CS
  Polyketide_cyc   1 vpapadqvyalvadvesypeflphcssvevleeaesglsa..dlevgfgglt.esftarvtldppeeitfklvegdfkslegkWtieslppnsgg 92 
                     ++a+a+ v+++ +dv+++pe++  +++++ le  +    +  + ++ ++gl+ + +    ++ p++     +   +  + +g ++i++lp    g
      KIR65743.1   9 IDADAERVWEVQSDVDRWPEWTASVRRACRLEPGPLT--VgsTARLEQPGLRpAVWRVVEVEAPYRF--AWVSALPGVRSRGDHRIVPLP----G 95 
                     789********************************53..2445555555553256666666666666..4444455666799********....9 PP

                     EEEEEEEEEEEE-SSCHHHHHH CS
  Polyketide_cyc  93 trtkvalevdfkfaspllgalv 114
                      +++v+l++d   ++pl ++ v
      KIR65743.1  96 GGVRVELSLDQ--SGPLAVP-V 114
                     99******776..3444433.3 PP

>> AHSA1  Activator of Hsp90 ATPase homolog 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   6.9e-06     0.041       1      91 [.      10      99 ..      10     117 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.9e-06
                SS-HHHHHHHHH-HHHHHHH..EEEEEEEE--...STTEEEEEEETTTSEEEEEEEEEEEEETTTEEEEEEEEETSETEEEEEEEEEEEE.ETTEEE CS
       AHSA1  1 dapperVfraltdpellkrW..ftlteaemdl...rpGgkfrlrdspdgkefgnegeylevvpperlvytwrledepeeeestvtielee.egggTr 91
                da +erV+++ +d ++   W    + ++++++    +G++ rl   ++ +  +   ++ ev+ p r+ +   l++     +s+    + +  ggg+r
  KIR65743.1 10 DADAERVWEVQSDVDRWPEWtaSVRRACRLEPgplTVGSTARL---EQPGLRPAVWRVVEVEAPYRFAWVSALPG----VRSRGDHRIVPlPGGGVR 99
                5889****************88778889999855555999999...444555555559*********99977663....344444444443333344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       180  (0.0100396); expected 358.6 (0.02)
Passed bias filter:                      142  (0.00792013); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1103.43
//
Query:       KIR65744.1  [L=165]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-16   59.7   0.0    2.9e-16   59.6   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.2e-11   44.9   0.1    1.6e-11   44.5   0.1    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.2e-11   44.0   0.1    3.4e-11   43.4   0.1    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    5.8e-08   32.9   0.0    7.2e-07   29.3   0.0    2.0  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    0.00021   21.2   0.1    0.00032   20.6   0.1    1.3  1  FR47             FR47-like protein
    0.00059   19.6   0.2    0.00078   19.2   0.2    1.2  1  PanZ             Acetyltransferase (GNAT) domain, PanZ


Domain annotation for each model (and alignments):
>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   9.6e-20   2.9e-16      21     126 ..      44     156 ..      22     157 .. 0.82

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 9.6e-20
  Acetyltransf_10  21 alrerie..egealllvaeeggkivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYeklGFk 107
                      +l+e ++  +g a++lva  g ++vG ++   d+    h+++l+V+p+++g+G+g++Ll +ve+++  + ++   +t  as    ++Y+++G++
       KIR65744.1  44 TLDEILAmlAGPATVLVARAGHRLVGSVRAlVDDAgtaHVGRLAVAPDQQGRGVGARLLAEVEAACAGRASRFaLFTGAASERNLRLYRRHGYE 137
                      444444234999****************664444469*****************************8777777666666777************ PP

  Acetyltransf_10 108 avgeeqeenGirfvpMeke 126
                       vg    +nGi++  +ek+
       KIR65744.1 138 IVGHRPDANGISLAVLEKR 156
                      ***********98877765 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.1   5.2e-15   1.6e-11      14     117 .]      39     136 ..      23     136 .. 0.80

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 5.2e-15
                     HHHHHHHHHHHHHHHHSTTC.EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHH CS
  Acetyltransf_1  14 ppnedaseeefeesfsleae.gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveednda 107
                     pp  ++  e+ +       + + lva+ + +l+G +++l ++    g+a++ +laV+p+ +g+G+G +Ll ++e  +  + + +  l + +  ++
      KIR65744.1  39 PPLAETLDEILAML---AGPaTVLVARAGHRLVGSVRALVDDA---GTAHVGRLAVAPDQQGRGVGARLLAEVEAACAGR-ASRFALFTGAASER 126
                     44444444442222...3343778899999*************...*****************************99988.55668999999999 PP

                     HHHHHHHTTE CS
  Acetyltransf_1 108 airlYeklGF 117
                       rlY+++G+
      KIR65744.1 127 NLRLYRRHGY 136
                     9****88*98 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.1   1.1e-14   3.4e-11       3      75 ..      56     137 ..      54     138 .. 0.75

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 1.1e-14
                     EEEEEEEETTEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHHTT...SEEE.EE.EEEE..THHHHHHHHHHTTEE CS
  Acetyltransf_7   3 gevfVaeddgkivGfialslld...aeitrlaVdpeyrgkGiGraLleaae...kgii.le.qlel..naekaikfYeklGFe 75 
                     ++v+Va+ + + vG +++ ++d   a+ +rlaV+p+ +g+G+G +Ll+ +e    g +     l +  ++e+++++Y+++G+e
      KIR65744.1  56 ATVLVARAGHRLVGSVRALVDDagtAHVGRLAVAPDQQGRGVGARLLAEVEaacAG-RaSRfALFTgaASERNLRLYRRHGYE 137
                     6899*************9999999888888*****************852223444.221122233432237899*******8 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.4e-10   7.2e-07      13     128 .]      18     139 ..       6     139 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2.4e-10
                     HHHHHHHHTT----H...........HHHHHHHHHHTTSEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHH CS
  Acetyltransf_9  13 vlellkyaFqdeespl.........eeireyfrklleesrvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLlara 98 
                     +l ++++a+  e +++         e+++e +  l +++ vl+a+ + +lvg++++l            +a v+  avap+++grgv  +Lla++
      KIR65744.1  18 ILTVQRAAYVTEAQHYgdpflpplaETLDEILAMLAGPATVLVARAGHRLVGSVRALV-------DDAGTAHVGRLAVAPDQQGRGVGARLLAEV 105
                     5555555555555555555556663366777777788889999999999999888874.......2345799*********************** PP

                     HHHHHHTT--EEEE--....SSHHHHHTTT-EE. CS
  Acetyltransf_9  99 leemreegqplsllfP....ssipiYrrfGyeia 128
                      + ++ +  +++l ++    ++ ++Yrr Gyei+
      KIR65744.1 106 EAACAGRASRFALFTGaaseRNLRLYRRHGYEIV 139
                     ************999976444459********85 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   1.1e-07   0.00032      22      79 ..      81     138 ..      60     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.1e-07
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfek 79 
                   +g l v p+ ++rG g rl +++ ++ a r     l ++a+ ++  rly + G+e 
  KIR65744.1  81 AHVGRLAVAPDQQGRGVGARLLAEVEAACAGRASRFALFTGAASERNLRLYRRHGYEI 138
                 567899**************************************************86 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   2.6e-07   0.00078      29      89 ..      47     108 ..      37     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.6e-07
        PanZ  29 aleaalteegalfaarFNdRlLgAvkveledk.eaelsdlcVRevTRrRGVgsyLleearrq 89 
                  + a l+   ++++ar   Rl g+v+  ++d+ +a++  l V      RGVg +Ll e+   
  KIR65744.1  47 EILAMLAGPATVLVARAGHRLVGSVRALVDDAgTAHVGRLAVAPDQQGRGVGARLLAEVEAA 108
                 5556777788999************988877659**********************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1311.33
//
Query:       KIR65745.1  [L=171]
Description: hypothetical protein TK50_10405 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-51  174.4   2.0    1.8e-51  174.2   2.0    1.0  1  DUF1990   Domain of unknown function (DUF1990)


Domain annotation for each model (and alignments):
>> DUF1990  Domain of unknown function (DUF1990)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.2   2.0   9.8e-56   1.8e-51       1     152 [.       5     158 ..       5     159 .. 0.94

  Alignments for each domain:
  == domain 1  score: 174.2 bits;  conditional E-value: 9.8e-56
     DUF1990   1 tyaevgat....lPagyrvdrarvrlGegeevFerAaeallswemhrlagvrvraeapraaegatvvvevrflglgvl...apcrvvyvvdepdrfGFa 92 
                 ty++ gat    lPag+r++r+rv l +g  +F++A +a+l w++hr+ag+r++a+apraa+g+t  v++r lg+g+l   apc+vv++vd+++r+GF+
  KIR65745.1   5 TYPHPGATrageLPAGWRHVRHRVPLPAG--SFDAAGAAVLGWRLHRAAGIRIDATAPRAAPGVT--VVSR-LGVGPLrlaAPCQVVWAVDDDRRAGFG 98 
                 688889999999************99765..9*********************************..7777.887777779****************** PP

     DUF1990  93 YgTLpgHperGeerFlveldedgeVwfevtAfsrpaswlsrlggPvvrllQrrfarrylr 152
                 YgTLpgHp+rGee+F+ve+d++g+Vwfev+Afsrp++w++r++gP+ r++Qr +a+ ++r
  KIR65745.1  99 YGTLPGHPARGEEAFVVERDDSGAVWFEVRAFSRPDRWFMRAAGPAGRAFQRGYAWWLGR 158
                 ******************************************************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       203  (0.0113224); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1303.60
//
Query:       KIR65746.1  [L=305]
Description: DNA-3-methyladenine glycosylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0033   17.8   0.0     0.0053   17.2   0.0    1.3  1  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei
  ------ inclusion threshold ------
       0.12   13.0   0.1       0.29   11.8   0.1    1.6  1  HHH_5     Helix-hairpin-helix domain
       0.16   12.4   1.8       0.32   11.4   0.5    2.1  2  HHH_8     Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.8e-07    0.0053       2      92 ..     127     259 ..     126     273 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.8e-07
                 HHHHHTTS-HHHHHHHHHHHHHHHS............HCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH...................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................... RF
     HhH-GPD   2 sailsqqtsderanriierlferfg............fptpedladadeekLrelirelGfyrrKakyikelArilv...................... 66 
                 +ail q+++   a+r+++  ++ fg             p+p ++a+a+   ++      G+ +++a  ++ +A +                        
  KIR65746.1 127 RAILEQKVTGTEAYRAYAATVRHFGepapgpmqplllPPDPAAVAAAPYWVFHPF----GVEQKRADTLRRAAAEAGrlercadaaeatrrltavpgig 221
                 79**********************************99*****************....**************99999********************* PP

                 ............S-SSS--TTSHHHHHHHHHHTTSSSS CS
                 ............xxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 ............gkpdvlivvDvhvrrilkrlrsikek 92 
                             g pd+++v D hv + + +  + +++
  KIR65746.1 222 awtaaevvriayGDPDAVSVGDYHVPNTVAWSLAGEPR 259
                 ************99***********9988877766665 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   4.8e-05      0.29      11      51 ..     184     228 ..     182     232 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.8e-05
                 -HHHHHHHHTT..T--SHHHHHHS..-HHHHHTSTTS-HHHHHHH CS
       HHH_5  11 GpktAlallsa..Giesvedlaaa..dveeLakipGiGkktAeri 51 
                   k+A +l +a    + +e  a+a  ++ +L+++pGiG+ tA  +
  KIR65746.1 184 EQKRADTLRRAaaEAGRLERCADAaeATRRLTAVPGIGAWTAAEV 228
                 555555555552223567777776225678*********999766 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.67     4e+03      26      33 ..     138     145 ..     121     153 .. 0.52
   2 ?   11.4   0.5   5.3e-05      0.32      25      66 ..     188     231 ..     182     232 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.67
                 HHHHHHHC CS
       HHH_8  26 raYrrAar 33 
                  aYr  a+
  KIR65746.1 138 EAYRAYAA 145
                 34444444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5.3e-05
                 HHHHHHHHCCCCC-SS-HHHHTT..HCTTSTT--HHHHHHHHHH CS
       HHH_8  25 vraYrrAaraiealpeeitslee..eltklpgiGkkiaakieei 66 
                 +   rrAa+   +l++  + +e+  +lt++pgiG+ +aa++  i
  KIR65746.1 188 ADTLRRAAAEAGRLERCADAAEAtrRLTAVPGIGAWTAAEVVRI 231
                 55568999999999986665544557************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2378.41
//
Query:       KIR65747.1  [L=219]
Description: lipoprotein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-31  106.7   7.4    2.5e-16   58.9   2.4    2.5  2  Lipoprotein_15  Secreted repeat of unknown function
  ------ inclusion threshold ------
      0.035   14.6   1.1       0.07   13.7   1.1    1.5  1  LPAM_1          Prokaryotic membrane lipoprotein lipid attach
      0.093   12.8   0.0       0.14   12.2   0.0    1.3  1  MAR_sialic_bdg  Sialic-acid binding micronemal adhesive repea


Domain annotation for each model (and alignments):
>> Lipoprotein_15  Secreted repeat of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.2   2.2e-17   1.3e-13       6      46 ..      85     124 ..      82     125 .. 0.95
   2 !   58.9   2.4   4.2e-20   2.5e-16       1      46 [.     141     183 ..     141     184 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 2.2e-17
  Lipoprotein_15   6 ddGtkqvaykGmPLYtFakDkkpgdktGdgvgaCagvWpvv 46 
                      +G+++++ +G+ LY+F+kD+ ++ + +++v++Ca+vWp++
      KIR65747.1  85 RMGKVVTDEEGWVLYRFDKDSDDPPA-SNCVDKCAEVWPPA 124
                     58************************.************98 PP

  == domain 2  score: 58.9 bits;  conditional E-value: 4.2e-20
  Lipoprotein_15   1 ktvtrddGtkqvaykGmPLYtFakDkkpgdktGdgvgaCagvWpvv 46 
                     +t+tr+dGt q++  G+PLY++ +Dkkpg+++G+gvg   g+W+v+
      KIR65747.1 141 GTITRQDGTRQITLGGWPLYRYIGDKKPGQWKGQGVG---GTWFVA 183
                     59***********************************...****98 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.1   1.2e-05      0.07       2      18 .]       5      21 ..       5      21 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.2e-05
      LPAM_1  2 KKillalgalllLsGCs 18
                K+++++++a+++L++C+
  KIR65747.1  5 KRTVIVASAMVALTACA 21
                9***************6 PP

>> MAR_sialic_bdg  Sialic-acid binding micronemal adhesive repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.4e-05      0.14      25      68 ..      81     122 ..      70     145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.4e-05
  MAR_sialic_bdg  25 kvvARygvgkksqeeeeWrCyaeaeldssekevkCvddcGnlts 68 
                     k vAR+g+     +ee W  y+ ++ + +  +++Cvd+c +  +
      KIR65747.1  81 KKVARMGKVV--TDEEGWVLYRFDKDSDDPPASNCVDKCAEVWP 122
                     6789998887..8999***********************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1625.87
//
Query:       KIR65748.1  [L=261]
Description: RNA polymerase sigma factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-05   23.1   1.9    6.6e-05   23.1   1.9    2.2  3  zf-HC2    Putative zinc-finger


Domain annotation for each model (and alignments):
>> zf-HC2  Putative zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   1.9   3.7e-09   6.6e-05       9      34 ..      10      35 ..       8      36 .. 0.91
   2 ?   -3.8   0.0      0.95   1.7e+04      12      18 ..      52      59 ..      51      62 .. 0.54
   3 ?   -2.6   0.0      0.38   6.9e+03      19      27 ..      72      80 ..      67      80 .. 0.57

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.7e-09
                HHHHCCT-SCCCHCCCHHHHCHTCHH CS
      zf-HC2  9 saYlDGeLspeerarveaHLaeCpdC 34
                 aY+ G L++ + +r+e+HLa+C +C
  KIR65748.1 10 AAYALGVLDEHDTERFEEHLATCWAC 35
                69*********************555 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.95
                HCCT.-SC CS
      zf-HC2 12 lDGe.Lsp 18
                +DGe +++
  KIR65748.1 52 IDGEtMTA 59
                67764444 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.38
                CCHCCCHHH CS
      zf-HC2 19 eerarveaH 27
                ++  +v+aH
  KIR65748.1 72 RTLVAVRAH 80
                344567777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1804.89
//
Query:       KIR65749.1  [L=232]
Description: RNA polymerase sigma factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-15   56.7   0.4    2.8e-15   55.8   0.4    1.5  1  Sigma70_r2    Sigma-70 region 2
    1.1e-11   44.1   0.2    1.9e-11   43.3   0.2    1.4  1  Sigma70_r4    Sigma-70, region 4
    1.8e-08   33.9   0.1      3e-08   33.2   0.1    1.4  1  Sigma70_r4_2  Sigma-70, region 4
    4.7e-05   23.4   1.3    7.2e-05   22.8   1.3    1.3  1  Sigma70_ECF   ECF sigma factor
  ------ inclusion threshold ------
      0.017   15.3   0.1      0.051   13.7   0.1    1.9  1  HTH_28        Helix-turn-helix domain
      0.027   15.0   0.1      0.056   14.0   0.1    1.5  1  ADSL_C        Adenylosuccinate lyase C-terminus


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.4   9.4e-19   2.8e-15       1      69 [.      73     142 ..      73     144 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 9.4e-19
                 HHHHHHHHHHHHHHHC.T-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSS CS
  Sigma70_r2   1 lverylplvkrlarrl.lgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrr 69 
                 l++++   ++++++rl  g+++ aeD+vQe++lr+wr+++r+ +    s++ wl+++ar+ aid++R+++
  KIR65749.1  73 LYAEHAGPLLAFVMRLtGGDRQRAEDIVQETLLRAWRNAHRLGAQGQGSLRPWLVTVARRIAIDEHRSEQ 142
                 79999999********88899*********************9766669******************987 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.2   6.2e-15   1.9e-11       1      49 [.     174     222 ..     174     223 .. 0.98

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 6.2e-15
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLR 49 
                 aL++L++ +re+l+  +++g+T  E +e+lg+++++++++  +Alr LR
  KIR65749.1 174 ALRTLSQSHREILVATYFRGRTVPEAAEELGLPLGTAKSRVYYALRALR 222
                 89**********************************************9 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   9.9e-12     3e-08       4      54 .]     171     221 ..     168     221 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 9.9e-12
                   HHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   4 lrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   + +al++L++  rei++  y+ g +  E+Ae+lg++ gt ksr++ A+++L
    KIR65749.1 171 VADALRTLSQSHREILVATYFRGRTVPEAAEELGLPLGTAKSRVYYALRAL 221
                   6789******************************************99987 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   1.3   2.4e-08   7.2e-05      44     177 ..      91     219 ..      57     227 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.4e-08
  Sigma70_ECF  44 eetledtaLvfeaflrlvdkekfpdlsgrdhlfalaaeamrrilidhaRrrkrqkRGGdvvraeldeeedsvdsdspdelleLdealerllsldpeqa 141
                  +++  +  +v e  lr+ ++ +    +g++ l   ++++ rri id+ R++++  R  ++  ++l   ++   sds+d +l      + l  l++  +
   KIR65749.1  91 GDRQRAEDIVQETLLRAWRNAHRLGAQGQGSLRPWLVTVARRIAIDEHRSEQA--RPAETYDRDLTAFAE---SDSTDRVLRTMTVADALRTLSQSHR 183
                  44445555699999999999999999***********************9875..677777777776664...4666666666666666666677777 PP

  Sigma70_ECF 142 rlvelrkleGlsveEiAeklgvskrtverrlalaRa 177
                  + +   ++ G +v E+Ae+lg+   t++ r  +a  
   KIR65749.1 184 EILVATYFRGRTVPEAAEELGLPLGTAKSRVYYALR 219
                  788899****************99999988777644 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.7e-05     0.051       2      38 ..     183     223 ..     182     225 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
      HTH_28   2 RleiikllaaGhsvreaArelgi....srrtvyrWikryee 38 
                 R   +  + +G++v+eaA+elg+      ++vy  ++++++
  KIR65749.1 183 REILVATYFRGRTVPEAAEELGLplgtAKSRVYYALRALRT 223
                 556677899**************998777999999998886 PP

>> ADSL_C  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.9e-05     0.056      13      36 ..      85     122 ..      73     151 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.9e-05
                 H.H..TH-HHHHHHHHHHHHHHHHHC...........H CS
      ADSL_C  13 v.k..glgReeAyelVqeaamkawee...........l 36 
                 v +  g++R++A ++Vqe   +aw++           l
  KIR65749.1  85 VmRltGGDRQRAEDIVQETLLRAWRNahrlgaqgqgsL 122
                 4333499*****************98777665555552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1766.13
//
Query:       KIR65750.1  [L=285]
Description: spermine synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-05   23.0   0.0    0.00017   22.2   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    0.00059   19.3   0.0    0.00079   18.9   0.0    1.1  1  Spermine_synth   Spermine/spermidine synthase domain
     0.0006   20.5   0.0     0.0013   19.4   0.0    1.6  2  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.097   13.7   0.0       0.28   12.2   0.0    1.8  1  Methyltransf_24  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   3.7e-08   0.00017      18      94 ..      95     178 ..      76     180 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 3.7e-08
                      T..SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCC.T.SS-TT-EEEEEEES-CCC-....CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11  18 g..arvvgvDlskemlklakekaseegl.kvefvvadaek.l.pfednsfDlvvssevlhhv....edpekalkeiaRvLkpgGll 94 
                      g   rv  vD  +++++l++++ + +   +++++vada+  l   +d+s+D+vv+  +            ++ +e+aRvL pgG+ 
       KIR65750.1  95 GstQRVSEVD--AALVELVRRELPWPADpRLRVRVADARAtLgSTRDASYDVVVADVFAGARtpahLTSVEYAAEVARVLTPGGWY 178
                      3445555555..67777788888887778999999999964778**********99855444443336899*************86 PP

>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.8e-07   0.00079      19     131 ..      72     180 ..      53     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.8e-07
                     T-EEEEESSTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHSHHHHTTCGGCTTEEEEESTCHHHHCTCSS.-EEEEEEECCSTTCSSCGCSS CS
  Spermine_synth  19 pkevLiiGGgDGgvlrevvkhntvekitlvdiDqkvidfskkflpslaisafndarvklvlgdgfkflkayek.kfdvvivdsldpvgpaenlFs 112
                     p +vL +GGg   + r v       ++ + ++D   +++ ++ lp  a     d+r+ + + d+ + l  + +  +dvv++d  +   + ++l s
      KIR65750.1  72 PLRVLHLGGGALTLPRYVQATRPGSTQRVSEVDAALVELVRRELPWPA-----DPRLRVRVADARATLGSTRDaSYDVVVADVFAGARTPAHLTS 161
                     568999*****99999999999889999**************999754.....78*****************99***********66666668** PP

                     HHHHHHHHHTEEEEEEEEE CS
  Spermine_synth 113 keffdllkkvlkedGviil 131
                      e+   +++vl+++G + +
      KIR65750.1 162 VEYAAEVARVLTPGGWYLA 180
                     ***************8865 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   1.7e+04      21      41 ..      40      60 ..      30      65 .. 0.62
   2 !   19.4   0.0     3e-07    0.0013       5      97 .]      79     176 ..      75     176 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
                     SSEEEEEESSHHHHHHHHHHH CS
  Methyltransf_25 21 kakvtgvDiseemleaarera 41
                     +++v   D+++   e++r+ a
       KIR65750.1 40 QSHVDLADPTHLEFEYVRRLA 60
                     567777777766666666655 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 3e-07
                      T-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHH.TTTTEEEEESBCCGB..SSSTTTEEEEEEEST.GGGSSHHHH..HHHHHHHHH CS
  Methyltransf_25   5 GcGtGrltlalakrl.gkakvtgvDiseemleaareraee.eglnvefvqgdaedl..pfedgsfDlvvssga.lhhlsdedl..ekalkeiar 91 
                      G G  +l +++++   g ++    +++++++e +r+++   ++++++++++da++   +  d+s+D+vv+  +     ++++l   ++ +e+ar
       KIR65750.1  79 GGGALTLPRYVQATRpG-STQRVSEVDAALVELVRRELPWpADPRLRVRVADARATlgSTRDASYDVVVA-DVfAGARTPAHLtsVEYAAEVAR 170
                      55555555555444333.44445566678999999999655666*********88523589*********.56333344444322679****** PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                      vL+pgG
       KIR65750.1 171 VLTPGG 176
                      *****9 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.1e-05      0.28      47     102 ..     119     179 ..      76     181 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.1e-05
  Methyltransf_24  47 lddrvrlikadseealaslaagsiDllfiDgghaae.....avledleallprlapggvvl 102
                       d r+r+++ad++++l+s ++ s+D+++ D  + a+     +  e+   + ++l+pgg+ l
       KIR65750.1 119 ADPRLRVRVADARATLGSTRDASYDVVVADVFAGARtpahlTSVEYAAEVARVLTPGGWYL 179
                      57799*************************9554431222256666788889999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2247.23
//
Query:       KIR65751.1  [L=323]
Description: hypothetical protein TK50_10435 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2164.81
//
Query:       KIR65752.1  [L=824]
Description: chromosome segregation protein SMC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-18   67.4   0.0    5.5e-18   66.2   0.0    1.6  1  AAA_23    AAA domain
    5.7e-13   48.9   0.7    1.8e-12   47.4   0.7    1.9  1  SbcCD_C   Putative exonuclease SbcCD, C subunit
    3.4e-11   43.0   0.0    1.4e-10   41.0   0.0    1.8  1  SMC_N     RecF/RecN/SMC N terminal domain
    5.5e-08   32.4   0.0    1.2e-07   31.4   0.0    1.5  1  AAA_29    P-loop containing region of AAA domain
    3.3e-05   24.4   0.0     0.0049   17.4   0.0    2.8  2  ABC_tran  ABC transporter
     0.0005   19.7   0.0     0.0005   19.7   0.0    4.7  5  AAA_27    AAA domain
     0.0011   18.9   0.0     0.0019   18.1   0.0    1.4  1  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
  ------ inclusion threshold ------
      0.069   12.9   0.0      0.099   12.3   0.0    1.1  1  AAA_15    AAA ATPase domain
       0.11   12.8   0.0       0.56   10.5   0.0    2.3  1  AAA_22    AAA domain
       0.56    9.9   5.3       0.18   11.5   0.1    2.4  3  DUF4201   Domain of unknown function (DUF4201)
       0.73    9.1   3.2        1.6    8.0   0.3    2.2  2  DUF2353   Uncharacterized coiled-coil protein (DUF2353)


Domain annotation for each model (and alignments):
>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   3.4e-21   5.5e-18       1     154 [.       5     176 ..       5     240 .. 0.73

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 3.4e-21
      AAA_23   1 kLkienfrsfrdqe.idF.skgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgry..trsierere 95 
                 +L + +f  frd++ +dF +  +++++Gp+G+GK+T+ldAi++aLyg +pr ++++g g+  +         ++a v+l fe+ ++ry  tr ++r+  
  KIR65752.1   5 RLDMAGFTVFRDETtVDFtDADFFALVGPTGSGKSTVLDAICFALYGTVPRWGGTRGLGNALAPS------ATEARVRLVFESAGDRYvaTRVVRRDGR 97 
                 678899****87655***888*********************************88755443333......56899**********9876666666555 PP

      AAA_23  96 lskkkgktt...........kkaklellei.................deleqfisellgskkiilnlilflgqerfeefelkdkker 154
                  + k ++             k                          +e ++ + e +g  +++++ ++ l+q++f+ f+ +++  r
  KIR65752.1  98 GNVKTANAGlqlmpagfdvtK--------LdtglspedlgevvagtpAEMDRAVLEAVGLPYEQFTSCVVLPQGQFADFLHARPATR 176
                 555544444333333333221........1334444556666777889999999999999999************998888665553 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.7   1.1e-15   1.8e-12      22      89 ..     715     781 ..     705     782 .. 0.91

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 1.1e-15
     SbcCD_C  22 kekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                  +  l+r ++tlSGGe+ f a+lala+al+ ++   +++  +l++++LDE+F++lD+ +++t+ ++le
  KIR65752.1 715 HDAGLRRGVRTLSGGET-FQASLALALALSEQLAGLSTTAASLESIVLDEGFGTLDAATLDTVAATLE 781
                 455699***********.****************9877899*********************998886 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   8.3e-14   1.4e-10       4     188 ..       5     785 ..       4     816 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 8.3e-14
                 EEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   4 rleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrr 102
                 rl + +F  ++++t++   +  f a+vGp GSGKs +ldAi+F L  +     r   ++ l ++    +s+++a+v ++f+  +++       ++ +r 
  KIR65752.1   5 RLDMAGFTVFRDETTVDFTDADFFALVGPTGSGKSTVLDAICFALYGTV---PRWGGTRGLGNA--LAPSATEARVRLVFESAGDR-------YVATRV 91 
                 678999*****999999999*************************8444...478888888775..8899***********99999.......888888 PP

                 EETTSEEEEEETTEEE-H..HHHHHHHHCTT-STT................................................................ CS
                 xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx................................................................ RF
       SMC_N 103 vkrkgeseykingkevtk..kevsellesagiske................................................................ 135
                 v r+g+ ++k  +   +   +       ++g+s+e                                                                
  KIR65752.1  92 VRRDGRGNVKTANAGLQLmpAGFDVTKLDTGLSPEdlgevvagtpaemdravleavglpyeqftscvvlpqgqfadflharpatrqqilvnllglgvye 190
                 8888886666555544441122222222444555599999*********************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  KIR65752.1 191 evqrrateragraearleavdrvlggladvddaaltgareqigrahelagavaaavperdaaraaardahaalaaldaelavldgvrapggvaevarav 289
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  KIR65752.1 290 adaragvgeaagavalaeereeklrgelagagdesalrlllkahadrdrlagqagsvatavtaaqaehdaavaaleearaaaqraeaeleaafraheea 388
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  KIR65752.1 389 katdqavalrahlvdgaacpvceqvvarvpavpagsavarataagkaaraaaqaaqrvvqerdaaardvervllraraehdqlrdrlaelddqlagaaa 487
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  KIR65752.1 488 paalrhdlaeharlrralddaagavragrdaarrargaldaaeerlrgawrdfdatrdglarfgppaadrddvaaawatltgwaggeaarrradrpgla 586
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  KIR65752.1 587 eavagaeaavaavqdriaeifaaaglaatddpvraatvaveraeaahrrlverreqaaelreqragherqarvaralaghlrannferwllaealdllv 685
                 *************************************************************************************************** PP

                 .......................................CS-HHHHHHHHHHHHHH........HHCCS--SE..EEECTTTTTS-HHHHHHHHHHHHH CS
                 .......................................xxxxxxxxxxxxxxxxx........xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 .......................................lLSgGektLvalaLlfA........iqkvkpapl..yllDeidaaLDeknvkkvaellke 185
                                                        +LSgGe   ++laL +A              a+l   +lDe    LD++    va  l++
  KIR65752.1 686 dgasgilrelsggqydlvhdkgeffvvdhhdaglrrgvrTLSGGETFQASLALALAlseqlaglS--TTAASLesIVLDEGFGTLDAATLDTVAATLES 782
                 ******************************************************99777766542..33333333799999999999999999999987 PP

                 HCT CS
                 xxx RF
       SMC_N 186 ksk 188
                    
  KIR65752.1 783 LAA 785
                 654 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   7.2e-11   1.2e-07      10      49 ..      12      52 ..       4      55 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 7.2e-11
      AAA_29 10 gtfdg.htieidlkgatlltGpsGsGKSTllDAiqalLvpa 49
                  f++ +t++++ ++++ l+Gp+GsGKST+lDAi + L+++
  KIR65752.1 12 TVFRDeTTVDFTDADFFALVGPTGSGKSTVLDAICFALYGT 52
                56888899****999*********************99985 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     3e-06    0.0049       5      32 ..      19      46 ..      16      55 .. 0.85
   2 ?    3.8   0.1     0.047        77      97     129 ..     714     746 ..     623     749 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3e-06
                EEEEETTSEEEEEESTTSSHHHHHHHHT CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  5 slklkegekvaivGenGaGKStLlklla 32
                ++++      a+vG++G+GKSt+l +++
  KIR65752.1 19 TVDFTDADFFALVGPTGSGKSTVLDAIC 46
                5677777889***************997 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.047
                 TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  97 lkdtvvksspssLSgGqkqrvalarallkkpkl 129
                  +d  ++++ ++LSgG+    +la al+   +l
  KIR65752.1 714 HHDAGLRRGVRTLSGGETFQASLALALALSEQL 746
                 45566667779*******999999999877766 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.1e-07    0.0005       1      53 [.       1      52 [.       1     104 [. 0.92
   2 ?   -0.2   0.7      0.38   6.2e+02      72     167 ..     215     308 ..     209     317 .. 0.76
   3 ?   -1.1   2.4      0.73   1.2e+03     168     203 ..     335     370 ..     317     399 .. 0.48
   4 ?    0.7   1.5      0.21   3.4e+02     141     193 ..     454     508 ..     437     521 .. 0.74
   5 ?   -0.8   0.3      0.59   9.6e+02      79      97 ..     631     649 ..     585     694 .. 0.50

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.1e-07
      AAA_27  1 MrlerLdLeryGkftdr.sldfsaeeadlhliyGpNEAGKstalrAisdllfGi 53
                Mr  rLd+  +  f d+ ++df   +ad+  ++Gp  +GKst+l+Ai   l+G 
  KIR65752.1  1 MRPMRLDMAGFTVFRDEtTVDFT--DADFFALVGPTGSGKSTVLDAICFALYGT 52
                8999**********997479**8..89*************************96 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.38
      AAA_27  72 avleeadgeelefaRrk.grkktlldaddqalpeevlaallggldretFealFgLdherLreGGealleaegelgqlLfeasaGlaslrevleaLea 167
                 + l++ d+++l+ aR++ gr ++l++a   a+pe+  a+   ++ r+++ al +Ld+e  +  G +   +  e+++++ +a+aG+ + +  ++  e+
  KIR65752.1 215 GGLADVDDAALTGAREQiGRAHELAGAVAAAVPERDAAR---AAARDAHAALAALDAELAVLDGVRAPGGVAEVARAVADARAGVGEAAGAVALAEE 308
                 555566666777777654778888888888888876665...7889999999999999999999999999999999999999999888776655444 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.73
      AAA_27 168 eadelfkprkskkrainealeeleeakkelreaqvr 203
                 ++d+l  + +s  +a+++a++e+++a ++l+ea   
  KIR65752.1 335 DRDRLAGQAGSVATAVTAAQAEHDAAVAALEEARAA 370
                 444444444444444444444444444444443332 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.21
      AAA_27 141 egelgqlLfeasaGlaslrevleaLeaeadelfkprkskk..rainealeeleea 193
                   ++ ++L+ a+a   +lr+ l++L+++     +p + ++  ++ ++ +++l++a
  KIR65752.1 454 ARDVERVLLRARAEHDQLRDRLAELDDQLAGAAAPAALRHdlAEHARLRRALDDA 508
                 4578899*******************99998888877666333444444555554 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.59
      AAA_27  79 geelefaRrkgrkktllda 97 
                  ++ +++ r+++ ++l+++
  KIR65752.1 631 AAHRRLVERREQAAELREQ 649
                 1112222222222222222 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.1e-06    0.0019       1      22 [.      27      48 ..      27      96 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                + +l+Gp gsGKS++Lda+ ++
  KIR65752.1 27 FFALVGPTGSGKSTVLDAICFA 48
                679****************665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.1e-05     0.099      15      43 ..      15      45 ..       9      50 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.1e-05
      AAA_15 15 kd.veidlsee.ltvliGkNnsGKSsileal 43
                +d +++d+ +  +  l+G+ +sGKS++l+a+
  KIR65752.1 15 RDeTTVDFTDAdFFALVGPTGSGKSTVLDAI 45
                555999999988******************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00034      0.56       5      23 ..      25      43 ..      20      46 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00034
      AAA_22  5 agilvvtGesGtGKTtllr 23
                a + +++G++G+GK+t+l 
  KIR65752.1 25 ADFFALVGPTGSGKSTVLD 43
                67899***********986 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2         4   6.5e+03      93     126 ..     357     390 ..     350     401 .. 0.60
   2 ?   11.5   0.1   0.00011      0.18      89     144 ..     436     491 ..     427     512 .. 0.85
   3 ?    0.0   0.1      0.38   6.2e+02       8      45 ..     636     673 ..     629     675 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4
     DUF4201  93 lselkkelkekeerlaklrkelykvklerdklrk 126
                   ++   l+e  +  ++ ++el+ +   ++ +++
  KIR65752.1 357 HDAAVAALEEARAAAQRAEAELEAAFRAHEEAKA 390
                 4445555666666666666666666666666555 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00011
     DUF4201  89 leselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggllrvPaLl 144
                  ++  ++++   +e+++  +++++ l ++++e+d+lr++ ++l +q++   +Pa l
  KIR65752.1 436 ARAAAQAAQRVVQERDAAARDVERVLLRARAEHDQLRDRLAELDDQLAGAAAPAAL 491
                 6677888899999**********************************999999744 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.38
     DUF4201   8 lsklrlklislkhqlakiqeklekkeelgegLtlidFe 45 
                 l + r + ++l++q a ++++ +  + l+++L+++ Fe
  KIR65752.1 636 LVERREQAAELREQRAGHERQARVARALAGHLRANNFE 673
                 55678888888899999999999999999999999887 PP

>> DUF2353  Uncharacterized coiled-coil protein (DUF2353)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.3   0.00096       1.6      85     161 ..     311     390 ..     301     400 .. 0.84
   2 ?    1.2   0.2      0.12   1.9e+02      50     102 ..     441     492 ..     426     547 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00096
     DUF2353  85 eeLrqklkeaqgDiklLR....eqlarqrlglkdedlletrhssaeereelvkqlEklkekiqqlerdlkavldekeelvt 161
                 e+Lr  l+ a gD  +LR    +++ r rl+ +  +++++ + ++ e+   v++lE++++  q  e +l+a     ee ++
  KIR65752.1 311 EKLRGELAGA-GDESALRlllkAHADRDRLAGQAGSVATAVTAAQAEHDAAVAALEEARAAAQRAEAELEAAFRAHEEAKA 390
                 5677777765.89999999988889999999887777777777799************************99999888765 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.12
     DUF2353  50 kakaadlkeekekekklsqlleesreenkalkleveeLrqklkeaqgDiklLR 102
                 +a ++  +e++   +++ ++l  +r e  +l+  + eL ++l+ a+    +LR
  KIR65752.1 441 QAAQRVVQERDAAARDVERVLLRARAEHDQLRDRLAELDDQLAGAAAP-AALR 492
                 333344445577778888889999999999999999999888877654.3455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (824 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1425  (0.0794802); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.46
# Mc/sec: 5427.78
//
Query:       KIR65753.1  [L=382]
Description: nuclease SbcCD subunit D [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-11   44.3   0.0    3.7e-11   43.9   0.0    1.4  1  Metallophos    Calcineurin-like phosphoesterase
    3.1e-09   37.3   0.1    1.6e-08   34.9   0.1    2.1  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
    8.4e-07   29.2   0.2    2.2e-06   27.8   0.0    1.9  2  SbcD_C         Type 5 capsule protein repressor C-terminal do
     0.0018   17.2   0.0      0.003   16.5   0.0    1.3  1  Epimerase_2    UDP-N-acetylglucosamine 2-epimerase
  ------ inclusion threshold ------
      0.017   15.1   1.7       0.34   10.9   0.6    3.0  2  DUF834         Domain of unknown function (DUF834)


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0     1e-14   3.7e-11       1      76 [.       1      95 [.       1     227 [. 0.81

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 1e-14
                 EEEEEEESBTB.......TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHH....TSEEEEEC-TTS.........C CS
  Metallophos  1 lrilvigDlHl.......algggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvky....pipvylllGNHe.........g 76
                 ++il+++D+H+       ++++++ + l+ +++ +++e +pdlv++aGDl+d+  +  e  +l+++ +      +  v+++ GNH+          
   KIR65753.1  1 MKILHTSDWHVgkvlkgqSRAEEHKQVLAGVIEVARAE-RPDLVIVAGDLYDTAAPTPEATRLVTRALTAlrrtGADVVAIGGNHDngqaldalrP 95
                 89************999999999999999999777777.***************77777888855444444888999*********6544444440 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.1   4.6e-12   1.6e-08       1      63 [.       1     100 [.       1     264 [. 0.71

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 4.6e-12
  Metallophos_2   1 MklaiiSDlH............snldaleavlealkevgvdaiihaGDl.eeeep......evleellela....pvlaVrGNnD........... 62 
                    Mk+++ SD H            ++ + l+ v+e ++++++d++i+aGDl  +++p       v+++l +l+    +v+a+ GN+D           
     KIR65753.1   1 MKILHTSDWHvgkvlkgqsraeEHKQVLAGVIEVARAERPDLVIVAGDLyDTAAPtpeatrLVTRALTALRrtgaDVVAIGGNHDngqaldalrpw 96 
                    *****************977777777777779****************97555554444431333333333777***********65554444444 PP

  Metallophos_2  63 ...e 63 
                        
     KIR65753.1  97 aeaA 100
                    4330 PP

>> SbcD_C  Type 5 capsule protein repressor C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   6.2e-10   2.2e-06       3      93 ..     279     361 ..     277     363 .. 0.87
   2 ?   -3.1   0.2       2.8     1e+04      80      93 ..     366     379 ..     364     380 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 6.2e-10
      SbcD_C   3 rpLrrlkgdleeila...leepsekpawlevevtdedplpdlrerlrellegipvevlrlrrtr.ekasaeleqeaeetlaelspeevFerflae 93 
                 +pLr+++g+l+++ +          + wl+v v+++ p   lre+++ell+      l++ r + e   a  + ++ ++ a +sp e+F+++l++
  KIR65753.1 279 VPLRTVRGTLAQLAEiapP------EGWLRVFVREQ-PRAGLREEVQELLPRA----LEI-RIDpELVPAPGSGARTAQRAGRSPRELFADYLDS 361
                 69*************8655......9*******876.6668************....***.5555555888999999999************975 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.8
      SbcD_C  80 elspeevFerflae 93 
                 + ++ e+F++ ++e
  KIR65753.1 366 DADVRELFDELFEE 379
                 66788999999886 PP

>> Epimerase_2  UDP-N-acetylglucosamine 2-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   8.3e-07     0.003      35      83 ..       5      55 ..       1      64 [. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.3e-07
                 ---SEEE-..--S--HHHHHHHHHHHHHHHHHHH--SEEEEESSSHHHHHH CS
  Epimerase_2 35 ekpdydln..sdsqslakstgrvligleevleeekpDlvlvlGDtnetlag 83
                 ++ d++++   ++qs a+   +vl g+ ev ++e+pDlv+v GD + t a 
   KIR65753.1  5 HTSDWHVGkvLKGQSRAEEHKQVLAGVIEVARAERPDLVIVAGDLYDTAAP 55
                 566666665345599******************************999886 PP

>> DUF834  Domain of unknown function (DUF834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6   9.6e-05      0.34      31      51 ..     179     199 ..     174     199 .. 0.94
   2 ?    1.2   0.0      0.11   3.8e+02      17      33 ..     299     315 ..     298     319 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.6e-05
      DUF834  31 llLglAePtvaaAqsGDdrgg 51 
                 ++L +A++tv+ A++G+++++
  KIR65753.1 179 VHLVTAHLTVVGATTGGGERD 199
                 89****************987 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.11
      DUF834  17 GvpavfggnepaAGllL 33 
                 G  +vf ++ p+AGl+ 
  KIR65753.1 299 GWLRVFVREQPRAGLRE 315
                 66789**********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2984.94
//
Query:       KIR65754.1  [L=514]
Description: peptidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-52  177.2   0.4    4.9e-52  176.2   0.4    1.5  1  Peptidase_M4_C  Thermolysin metallopeptidase, alpha-helical d
    2.6e-50  170.7   7.0    5.9e-50  169.6   7.0    1.6  1  Peptidase_M4    Thermolysin metallopeptidase, catalytic domai
    1.4e-14   53.6   0.1    3.7e-14   52.3   0.1    1.8  1  FTP             Fungalysin/Thermolysin Propeptide Motif
     0.0034   17.9   0.6      0.008   16.7   0.1    1.9  2  PepSY           Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> Peptidase_M4_C  Thermolysin metallopeptidase, alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.2   0.4   1.1e-55   4.9e-52       1     168 []     347     513 ..     347     513 .. 0.97

  Alignments for each domain:
  == domain 1  score: 176.2 bits;  conditional E-value: 1.1e-55
  Peptidase_M4_C   1 anLeYsgesGAlnEslSDifgalveqyakkknadekdwliGeeivtpkskgdalRsmsnPssdgsspdhykkyvateednggvHlnSgilnkafy 95 
                     a+L+YsgesG+lnE++SDifg+lve+ a++ + d+ d+liGe++ +     ++lR+m++Ps+dgss+d++++++       +vH++Sg++n++fy
      KIR65754.1 347 AGLVYSGESGGLNEATSDIFGTLVEFSAANAS-DPGDYLIGEKLRS-----TPLRYMDKPSKDGSSADCWSTTL----RFKDVHYSSGVANHFFY 431
                     89**********************99999998.9**********66.....89********************6....5789************* PP

  Peptidase_M4_C  96 llaegg.........tktevkvtgigiekaakiyyraltkyltsttdFaeartaviqaAkdlygaksaevkavkkAfkavgv 168
                     lla g+         t++++++tgig +ka+ i+yralt+y+ts t++a arta+++aA+dlyga+s e+ +v++A++av+v
      KIR65754.1 432 LLAVGSgasaygnspTCDGSTITGIGNAKAGAIWYRALTTYMTSRTNYAGARTATLSAAADLYGASSVEYRTVAAAWTAVKV 513
                     ********************************************************************************98 PP

>> Peptidase_M4  Thermolysin metallopeptidase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.6   7.0   1.3e-53   5.9e-50       2     146 .]     198     344 ..     197     344 .. 0.97

  Alignments for each domain:
  == domain 1  score: 169.6 bits;  conditional E-value: 1.3e-53
                   CCEEECCTSCEEEE-EEETTCCESEETTS..EEEEE-TTSS.TT.-SS-EE-EECTTEC-HHH....-HHHHHHHHHHHHHHHHHHHHHSS-TTTSS CS
  Peptidase_M4   2 gtgkglyggtvslettqsggtyelkdasr..iktydlnnktssskelagtlvtssnnafsegn....etaavdAhygaakvydyYknkfgrnsidnk 92 
                   gtg++l++gtv+l tt sg+ty+l+d  r  +ktydln++ts  +  +gtlv+s++n+f++g+    +taa dAhygaa+++dyYkn+fgrn+i+n+
    KIR65754.1 198 GTGNTLHSGTVPLGTTASGSTYQLTDGARggHKTYDLNGSTS--G--TGTLVASATNVFGDGTtanrQTAAADAHYGAAVTWDYYKNTFGRNGIRND 290
                   89**************************************95..4..599***********9999******************************** PP

                   -S-EEEEECETTT---EEE-SS..EEEEE---SSSCBSGCGSHHHHHHHHHHHHHH CS
  Peptidase_M4  93 gaklksrVhygknyeNAfwdgs..qmtyGdGdgktftkllvalDVvgHEltHgvte 146
                   g +++srVhy++ny NAfw++s  +mtyGdG   + + +l++lDV+gHE+tHgvt+
    KIR65754.1 291 GVAAYSRVHYSTNYANAFWSDScfCMTYGDGG--SGFAPLTSLDVAGHEMTHGVTS 344
                   *******************************8..778*****************95 PP

>> FTP  Fungalysin/Thermolysin Propeptide Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.1   8.3e-18   3.7e-14       2      47 ..      58     103 ..      57     107 .. 0.93

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 8.3e-18
                 EEEE-TT-EE-TS-EEEEEEEEETTEEEEEEEEEEEE-TTSSEEEE CS
         FTP   2 efkvvkvetdanGttHvryqQtynGipVfggdlvvhvdkdGkvtsv 47 
                 +f++++v tda+Gt Hvr+ ++ +G+pV+ggdlvvh++k G++  +
  KIR65754.1  58 SFTLKNVATDADGTEHVRLHRYLDGLPVLGGDLVVHLGKGGAWRGA 103
                 79***************************************98766 PP

>> PepSY  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.8e-06     0.008      14      63 .]     140     191 ..     124     191 .. 0.79
   2 ?   -2.5   0.1       1.7   7.8e+03      10      35 ..     263     296 ..     261     309 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.8e-06
                 H.STTEEEEEEEEEEETTEEEEEEEEE...EE.TTEEEEEEEETTT--EEEEE CS
       PepSY  14 a.vpgkiieielededdgrlvYevelst..aepegpeyevfiDAkTGkvlkke 63 
                 + v g++++++ +      l+Yev +    a++++ e +v++DA TG v +++
  KIR65754.1 140 RrVDGTQLVYDADGA-RTALAYEVVVGGvyADGTPSELHVLVDAATGGVRSSW 191
                 248888888888887.99*****8866567*****************988776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.7
                 HHHHHSTTEEEEEEEEEEE........TTEEEEE CS
       PepSY  10 iAlaavpgkiieieleded........dgrlvYe 35 
                 +A +a+ g+++++++ ++         dg+++Y 
  KIR65754.1 263 AAADAHYGAAVTWDYYKNTfgrngirnDGVAAYS 296
                 5666777888888888765666777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 3238.86
//
Query:       KIR65755.1  [L=181]
Description: hypothetical protein TK50_10465 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-63  212.9   0.0    2.8e-63  212.8   0.0    1.0  1  PRiA4_ORF3  Plasmid pRiA4b ORF-3-like protein


Domain annotation for each model (and alignments):
>> PRiA4_ORF3  Plasmid pRiA4b ORF-3-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.8   0.0   1.5e-67   2.8e-63       1     172 [.       4     170 ..       4     172 .. 0.98

  Alignments for each domain:
  == domain 1  score: 212.8 bits;  conditional E-value: 1.5e-67
  PRiA4_ORF3   1 kayqlkveLkdvepkiwRrlevpeditlarLhevlqaafgwedyHlheFeieekrygeeeeedeeeeeevldeskvklddvlkekgkkltyeYDfgdsW 99 
                 +++qlkv+L +v+p +wRr++vp+ +tl+rLh+v+q a+gw+d+Hlh+Fei++++y+e    d++ e  v+de +v+ld v+  kg++++y+YDfgd W
  KIR65755.1   4 QIFQLKVSLVGVHPLVWRRVLVPAGYTLDRLHRVVQHAMGWRDCHLHSFEIDGTQYAE---PDPDGELAVRDELDVRLDAVV-GKGSRFHYTYDFGDWW 98 
                 589***************************************************9999...99*******************.**************** PP

  PRiA4_ORF3 100 eheielekvledkeearyprclagegacppEDvgGvgGyeelleiladpeheeyeemrewlgeqefdpeafdl 172
                 eh+i +e+ +++++++ryp+clage+acppEDvgG+ G + ll++l dp h+e+e++r+w+g+  +dp+afd+
  KIR65755.1  99 EHDILVEDAVTADPDERYPTCLAGERACPPEDVGGPAGHQVLLAALVDPAHPEHERLRDWAGDA-YDPDAFDP 170
                 *************************************************************995.******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1423.33
//
Query:       KIR65756.1  [L=204]
Description: hypothetical protein TK50_10470 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1652.08
//
Query:       KIR65757.1  [L=437]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-32  112.7   9.7    4.2e-32  112.1   9.7    1.2  1  SBP_bac_8   Bacterial extracellular solute-binding protein
    2.5e-22   80.3  11.7    2.5e-22   80.3  11.7    1.7  2  SBP_bac_1   Bacterial extracellular solute-binding protein
    1.8e-05   24.6   0.2       0.24   11.1   0.0    2.8  3  SBP_bac_11  Bacterial extracellular solute-binding protein
    6.7e-05   22.4   0.5    0.00041   19.8   0.3    2.1  2  SBP_bac_6   Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   9.7   9.4e-36   4.2e-32       2     277 ..      58     371 ..      57     375 .. 0.84

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 9.4e-36
                 HHHHHHHH-.TEEEEEEE-..-SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH-HHHHHTT......--TS.----EEEE CS
   SBP_bac_8   2 lakefekkt.gvkvnvvta..asndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnlddltdalaav......gydgklygvPyas 91 
                 l k+fe ++ ++k++      + +d+++ l+ ++ ag +   +v++ ++  ++ +a++g++++l+d   ++dl++ + ++      + dg++ g+  ++
  KIR65757.1  58 LYKQFESEHpNIKIEQRGKglGLGDYNTRLTQQITAGAGAGDVVALEEGTIVQFYAQAGKFVNLAD-HGANDLKANFLPWkweqgtTPDGTVLGLGTDV 155
                 789************555547889*************96554567777777999999********8.578888887777788877777*********** PP

                 EEE-EEEEEHHHHHHS...........---BHHHHHHHHHHH...HHH-SEGG---GGGGGGTHH.....ETTEE---H.......HHH.HHHHHHHHH CS
   SBP_bac_8  92 etpyvliynkdlleka..........edpktwdellaaakkl...kgkfglpdpasgwlqaalla.....kdgksldddg.....gkdglkealellkk 167
                 ++ ++l+y+ dl+++a            + twd++ aa +k+    +k  + d+a++++   l++     +++ ++d+ +     +++++  a +l +k
  KIR65757.1 156 GS-MALCYRSDLFKAAglptdreevgALWPTWDQFIAAGQKFaaaDKKHKFVDSATNFYNVVLMQtagngSGYTYYDKSNklvigENPDVRTAYDLSTK 253
                 *8.9**********978888888777799*********99995543555777*****998888888899534344455447789999999999999999 PP

                 HHHTT-..EE-S...--SSTTTTTSBSEEEE-TTHHHHHH.....-TTTSEEEE.--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHH CS
   SBP_bac_8 168 lkdngk..tydtg.adavsefanGevaftingswdiaaaq.....kagkklgai.vpkqgsfaggkglavpknaknedlaAldFlkwltspenqaalae 257
                 + ++g    +++  +++++ f+nG++a++  + w    ++      a  k+ ++ +p +g  +gg++lavpk++k++++ A++++k+lts+ +q + ++
  KIR65757.1 254 MIAAGLsnNLQSFsNEWNAGFKNGTFATIACPAWMTGVIKgqagdSAAGKWDVAkAPGNGGNWGGSFLAVPKSSKHPKE-AAELVKFLTSAKGQIEAFK 351
                 9999974422332379999*********************7555444469999999**********************7.******************* PP

                 HH---BS-S-TTTHHHHHH- CS
   SBP_bac_8 258 ktgyipvnksaalspevkkd 277
                 k g +p+ + a ++p+v++ 
  KIR65757.1 352 KVGNLPSSPQALADPAVADS 371
                 ***************99875 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3  11.7   5.5e-26   2.5e-22      10     314 ..      55     346 ..      49     347 .. 0.73
   2 ?   -2.9   0.2       1.1     5e+03     217     237 ..     402     422 ..     361     434 .. 0.55

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 5.5e-26
                 HHHHHHHHHHHHHTTEEEEEEEE..CHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHT.TSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE. CS
   SBP_bac_1  10 lqalvakafekehpgikVeiesv..gsgslaqkltlaiaaGdgpaDviavdndwiarlaka.glllpldpyvkaylapgvkdaadklsssvlpkilds. 104
                 +++l  k+fe ehp+ik+e      g g++ + lt +i aG+g+ Dv+a + ++i ++  + g +  l +  +++l+             +lp+ ++  
  KIR65757.1  55 YDELY-KQFESEHPNIKIEQRGKglGLGDYNTRLTQQITAGAGAGDVVALEEGTIVQFYAQaGKFVNLADHGANDLKAN-----------FLPWKWEQg 141
                 56666.99***********777777*************************99999966666688888877666664333...........555555544 PP

                 EE....ES.EEEE.EEEEEEEETTTHHCTTGGG........SHBHHHHHHHHHHHHHHCTCT.........HCCHCCEEHHHHHHHHHHHHHHHHTGGG CS
   SBP_bac_1 105 kv....ly.vPly.aargliYNkdlfekagldp........pwtWdelveaakklkekgkkp.........iggarggsasgtayyfalalakslggkv 180
                 +     +  + ++ ++++l Y+ dlf+ agl+         ++tWd++++a++k+ +++kk          + ++ + +a++  +y+           +
  KIR65757.1 142 TTpdgtVLgLGTDvGSMALCYRSDLFKAAGLPTdreevgalWPTWDQFIAAGQKFAAADKKHkfvdsatnfYNVVLMQTAGNGSGYT-----------Y 229
                 445666666888945**********************************************97777777777777777777777776...........4 PP

                 EECCCT...HHCSHHHHSHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBE CS
   SBP_bac_1 181 fdkdgg...gldnpegvtaatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPag 276
                 +dk ++   g +np   ta +  +k++a ++      + ++ +  ++a    f++G+ a +    w++        +v   ++ +++ ++++va  P  
  KIR65757.1 230 YDKSNKlviG-ENPDVRTAYDLSTKMIAAGL----SNNLQSFSNEWNA---GFKNGTFATIACPAWMT--------GVIKGQAGDSAAGKWDVAKAP-- 310
                 6777767754.66666667777777774333....3333333333333...46666666666666663........334455555666666666544.. PP

                 TTTTSEEEEEEEEEEBTTCSTHHHHHHHHHHHTSHHHH CS
   SBP_bac_1 277 kggkpgilgayglaipkgsknpeaAkkFldfllspeaq 314
                   g++g+ g++ la+pk+sk+p++A ++++fl+s+++q
  KIR65757.1 311 --GNGGNWGGSFLAVPKSSKHPKEAAELVKFLTSAKGQ 346
                 ..3333359999************************99 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.1
                 EEECSSHHHHHHHHHTTSCSE CS
   SBP_bac_1 217 gaenkdgaaalalfeaGeaam 237
                 +a  + +++ l+++e+G+ a+
  KIR65757.1 402 QAVRTAVENTLRAVEQGKPAA 422
                 334444455555555555555 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   8.8e-05      0.39      10      69 ..      52     119 ..      43     204 .. 0.85
   2 !   11.1   0.0   5.2e-05      0.24     196     221 ..     321     346 ..     319     355 .. 0.90
   3 ?   -2.1   0.1       0.6   2.7e+03     103     130 ..     391     423 ..     357     434 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.8e-05
                 HHHHHHHHHHH.HHHH---EEEEESSH......HHHHHHHHHH...-SEEEESSH.HHHHHHHHGGGG CS
  SBP_bac_11  10 aaalrelaaaF.eahtgvkvevsaggs......gklarqiadga.rpDvwipassawlellaaaglvq 69 
                  + ++el ++F ++h+++k+e +++g        +l +qi++ga + Dv++++  + ++  a+ag+ +
  KIR65757.1  52 GFGYDELYKQFeSEHPNIKIEQRGKGLglgdynTRLTQQITAGAgAGDVVALEEGTIVQFYAQAGKFV 119
                 56678999***6669***********9777777899*****************999998888887765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 5.2e-05
                 EEEEE-TT--HHHHHHHHHTTSHHHH CS
  SBP_bac_11 196 aavlkkaakreaAraFlafLrspeaq 221
                 +av+k+++++++A+++++fL+s+++q
  KIR65757.1 321 LAVPKSSKHPKEAAELVKFLTSAKGQ 346
                 699**********************9 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.6
                 S--EEEE--T-TTTTHH.HHHHGGG--.....H CS
  SBP_bac_11 103 glklavadPttspsGlaalalleaaga.....q 130
                 +lk ++  P++ ++ +a++++l+a ++     +
  KIR65757.1 391 ELKPVYLGPKNQAVRTAVENTLRAVEQgkpaaE 423
                 444444445555555555555554444334433 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.11   4.8e+02      15      76 ..     109     175 ..      99     187 .. 0.80
   2 !   19.8   0.3   9.2e-08   0.00041     141     222 ..     276     366 ..     252     382 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.11
   SBP_bac_6  15 lekfieeglfqpldpanlpnvnkdfa....eeglkdpdgkyy..pygvgplvlavnkdrlkgrpvPks 76 
                 ++ ++++g f  l +  +++++ +f     e+g++ pdg+    + +vg + l + +d +k+  +P++
  KIR65757.1 109 VQFYAQAGKFVNLADHGANDLKANFLpwkwEQGTT-PDGTVLglGTDVGSMALCYRSDLFKAAGLPTD 175
                 67788889998888888889998888887555555.46777778899999999999999999999976 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 9.2e-08
   SBP_bac_6 141 sgepavsvvpyffadilpekkkgk...nlkvvwPed.Galvspifmlvkkg.kkkelakafidfllspevqailakaggvfPvv....tnp 222
                  g+ a+   p++++ +++ + +     +++v      G+     f++v+k+ k++++a++++ fl+s+++q    k  g++P+     ++p
  KIR65757.1 276 NGTFATIACPAWMTGVIKGQAGDSaagKWDVAKAPGnGGNWGGSFLAVPKSsKHPKEAAELVKFLTSAKGQIEAFKKVGNLPSSpqalADP 366
                 5556666779999999999985559999999975555********************************9965555555699954343333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3407.56
//
Query:       KIR65758.1  [L=328]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-18   65.9  19.0    3.7e-18   65.9  19.0    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        3.6    7.8   7.1        2.1    8.6   0.8    2.3  2  DUF3333       Domain of unknown function (DUF3333)
        5.1    7.6  21.3       0.28   11.7   3.8    3.5  3  FtsX          FtsX-like permease family


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   5.9      0.73   4.4e+03      27      61 ..      42     118 ..      23     131 .. 0.52
   2 !   65.9  19.0   6.3e-22   3.7e-18       2     184 ..     114     325 ..     113     326 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.73
  BPD_transp_1  27 llslPsfvlaillvlvf..........................................vilsilghlilpviilll 61 
                   l+ lP+fv++ ++ +                                              ++i+  +  p ++l+l
    KIR65758.1  42 LYVLPFFVIFAVFSAYPivytvwialtdrsplnatisfvgldnfvelltndpqfwnavvNTFGIFLLSTVPQLMLAL 118
                   55677777555544222344444555555555555555555555555555555444443222333333333333333 PP

  == domain 2  score: 65.9 bits;  conditional E-value: 6.3e-22
  BPD_transp_1   2 illGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvf...................vilsilghlilpviillllsaapyvrlirraalr 77 
                   ++l++++a  lnr+ + + ++r  i ++  + + v+a+++ ++                     +      +++++ +++ + +++y+ li+ aa++
    KIR65758.1 114 LMLALVLAnaLNRKLRAQTFFRMAIAMPIITSTAVVALIFSMIYakefglanwlldmvgmdpiDWRANRFASWFAISTMVDWRWVGYNALIYLAAMQ 210
                   6899999966666666667777777777777777788888877799***************97666666666666999999**************** PP

  BPD_transp_1  78 slpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis............nggvlalv 162
                   s++kd +eaa ++Gasr++ f+ +++P++ p+ii +li++ +g l  ++ +++++s+ G     l+  ++ +++ i+            +g++ a++
    KIR65758.1 211 SISKDMYEAAALDGASRRRQFWSITIPQLRPTIIFTLIVSTIGGLQLFTEPLMFTSGAG----ALSGGSEGQFQTITmylldvmntrfrWGYAGAVA 303
                   *******************************************************5544....3333333333333334666677889*999999** PP

  BPD_transp_1 163 iavlllnlvadilqrlldprvr 184
                   ++++ll++++ +++ ll++r++
    KIR65758.1 304 LVLFLLIALVSLVNYLLARRIS 325
                   *******************986 PP

>> DUF3333  Domain of unknown function (DUF3333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.8   0.00035       2.1       3      39 ..     123     159 ..     121     164 .. 0.93
   2 ?    2.3   0.7     0.029   1.7e+02      11      34 ..     291     314 ..     289     318 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00035
     DUF3333   3 rlkrRyaaErrFrlyGiaAialallfLviLlvsIvsk 39 
                  l+r+ +a + Fr++  + i+++ +++++++++I +k
  KIR65758.1 123 ALNRKLRAQTFFRMAIAMPIITSTAVVALIFSMIYAK 159
                 6899*****************************9876 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.029
     DUF3333  11 ErrFrlyGiaAialallfLviLlv 34 
                  +rFr+    A+al l+ L+ L++
  KIR65758.1 291 NTRFRWGYAGAVALVLFLLIALVS 314
                 589***9999****9999999876 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.16   9.7e+02      68      86 ..      40      57 ..      26      70 .. 0.51
   2 ?   11.7   3.8   4.7e-05      0.28      19      78 ..      96     154 ..      94     158 .. 0.78
   3 ?    3.3   4.8      0.02   1.2e+02      11      94 ..     224     324 ..     216     326 .. 0.54

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.16
        FtsX 68 tvliiivlllllallagll 86
                ++l ++ +++++a+++ ++
  KIR65758.1 40 PYLYVLPFFVIFAVFS-AY 57
                3333333333333333.22 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.7e-05
        FtsX  19 llllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivllll 78 
                 +  ++ ++ i+l+++v  l l+l++a++l+ +l ++ f ++++i +++it  ++++l++ 
  KIR65758.1  96 WNAVVNTFGIFLLSTVPQLMLALVLANALNRKLRAQTF-FRMAIAMPIITSTAVVALIFS 154
                 5567788999**************************99.666666666666666665554 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.02
        FtsX  11 GmkkkqvlllllteillitlvalviG..lgl............gllaaqllsdvllssvfs......selkisidlitvliiivlllllallagllsis 89 
                 G+++++ ++ +++  l  t++ ++i   +g             g   a +ls + + +++       + +   + +    +++++l+ll+ l++l+  +
  KIR65758.1 224 GASRRRQFWSITIPQLRPTIIFTLIVstIGGlqlfteplmftsG---AGALSGGSEGQFQTitmyllDVMNTRFRWGYAGAVALVLFLLIALVSLVNYL 319
                 67777777777777777776666666332223344444432221...1222222222222245534566666666666666666666666666666666 PP

        FtsX  90 kilkk 94 
                  ++++
  KIR65758.1 320 LARRI 324
                 66665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       886  (0.0494171); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2324.20
//
Query:       KIR65759.1  [L=299]
Description: sugar ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-20   73.6  13.6    1.7e-20   73.6  13.6    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.24   11.7   8.7       0.04   14.2   1.9    2.7  2  DUF4064       Protein of unknown function (DUF4064)
        2.4    8.2   5.1        5.7    7.1   5.1    1.5  1  DUF1658       Protein of unknown function (DUF1658)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.6     0.045   2.7e+02      47      77 ..      33      63 ..      25      71 .. 0.56
   2 !   73.6  13.6   2.8e-24   1.7e-20       3     171 ..     110     283 ..     108     291 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.045
  BPD_transp_1 47 silghlilpviillllsaapyvrlirraalr 77
                  +++g  +  ++ l+ +++++++   +++a +
    KIR65759.1 33 TWVGLVFGVILSLFPFYWMIVIASRTNDAAN 63
                  4444444445556666666666555555555 PP

  == domain 2  score: 73.6 bits;  conditional E-value: 2.8e-24
  BPD_transp_1   3 llGilaa...lnrnkkldkllrpliivllslPsfv.laillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasr 94 
                   ++G+la+    + +++++++++ +i + +++P+ + +++l +    ++ +l +l+++  +++ +l  ++ ++++r+ a +++p +l+eaar++G+s+
    KIR65759.1 110 FFGSLAGfafAKLRFRGKNAMLLIILASMMVPIQLgVLPLYI----LMAKLEWLNTMpSVTVPFLIGGFGIFMMRQYAEQAVPNELIEAARVDGCST 202
                   66777776666************************5555555....6699999999956666666666666777788888***************** PP

  BPD_transp_1  95 wqifrkvvlPnalppiitglilafggllggavlleflgswpG.....lgtllleailgydyseisnggvlalviavlllnlv 171
                   w+++++vv+P++ p ++ + +l+f+  +++++++  ++++p+     ++++ l++    d s+i  +g+l++++ ++++ ++
    KIR65759.1 203 WRVYWHVVVPALRPAAAVLGLLTFMEQWNQFFWPFVVLADPAnptvqISLRSLNTAYFADNSQIF-AGTLVATLPLFVVFVL 283
                   *****************************************876644444444444444444444.5555555444444433 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.9   6.7e-06      0.04       8      95 ..      32     135 ..      28     142 .. 0.68
   2 ?    0.7   0.7       0.1   6.2e+02      61      61 ..     234     234 ..     156     293 .. 0.51

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.7e-06
     DUF4064   8 LglIGgilgillglllllflfllssgefsqeltee.................qalsgedasavleflstllivlgvialiaivlgivgalllkknkkvs 89 
                 L+++G ++g++l+l+ ++ ++++ s  ++ +++                   ++ +++ ++  + ++ ++++++   +++ +++g+++a l    +k +
  KIR65759.1  32 LTWVGLVFGVILSLFPFYWMIVIASRTNDAANSWPppflpggklgeniqrvlENGDANIVKGLMNSFLVSGTITVATVFFGSLAGFAFAKLRF-RGKNA 129
                 89*********************999988887666**********999855545555555555555555555555556666666666654444.44433 PP

     DUF4064  90 Gilfii 95 
                  +l+i+
  KIR65759.1 130 MLLIIL 135
                 333333 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.1
     DUF4064  61 l 61 
                 +
  KIR65759.1 234 F 234
                 1 PP

>> DUF1658  Protein of unknown function (DUF1658)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.1   0.00095       5.7       5      19 ..       5      21 ..       4      21 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00095
     DUF1658  5 TrriPARPs..HGrdGr 19
                T+r+PARP   ++rd +
  KIR65759.1  5 TLRPPARPAgrPPRDAH 21
                9*************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2036.13
//
Query:       KIR65760.1  [L=477]
Description: beta-glucosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.5e-164  545.4   0.0   9.3e-164  545.1   0.0    1.0  1  Glyco_hydro_1  Glycosyl hydrolase family 1
  ------ inclusion threshold ------
       0.16   11.9   0.0       0.27   11.2   0.0    1.3  1  Topo_C_assoc   C-terminal topoisomerase domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  545.1   0.0    1e-167  9.3e-164       4     452 ..      20     473 ..      18     474 .. 0.95

  Alignments for each domain:
  == domain 1  score: 545.1 bits;  conditional E-value: 1e-167
                    GS-TT-EEEEE--HHHHH--TTSTT---BHHHHHHHHGGGSTTS---SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHSTTSTT---HHHHHH CS
  Glyco_hydro_1   4 tfpedFlwgaataayqiEGawnedGkgesiwDtftetpgkvlegsngdvacdsYhrykeDvallkelgvkayrfSisWpRilPkGegeinekGlay 99 
                    tfp +FlwgaataayqiEGa +++G+++siwDtf++t+g+++ g++gdvacd++hr++ Dv+l++elg+k+yrfS+sWpR+ P G+g  n +Gl++
     KIR65760.1  20 TFPPGFLWGAATAAYQIEGAATAGGRTPSIWDTFSHTEGRTVGGHTGDVACDHFHRMPDDVRLMAELGLKSYRFSVSWPRVQPGGSGAANAEGLDF 115
                    8*********************************************************************************************** PP

                    HHHHHHHHHHTT-EEEEEEESS--BHHHHHH-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHTSS-STT-S-TTTHHHHHHHH CS
  Glyco_hydro_1 100 YerLidelleagieplvTlyHwdlPqaLqdeGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvvallgyltgefaPgkkdleaayeaaHn 195
                    Y+rL+dell +giep +TlyHwdlPq L+d+Ggw  r++  +f +ya++v + +gd+v++w+T+nEp+++a+lgy++g +aPg +d++ a +a+H+
     KIR65760.1 116 YQRLVDELLGHGIEPWLTLYHWDLPQPLEDAGGWPARDTAGRFADYAQLVADALGDRVRYWTTLNEPWCSAFLGYGSGAHAPGRTDGADAVRAGHH 211
                    ************************************************************************************************ PP

                    HHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHHHHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGGG..S----HHHHHHHTT--SEEE CS
  Glyco_hydro_1 196 lllaharavklykevaqkgkigivlnlslaeplseseedkeaaeraleflngwfldpvvkGdYpeemkellrergalpeiteedkellkgkadflg 291
                    l+l h+ av++ +   +++++gi++nl  ++p+++s++d  aa r + ++n++fldpv++G+Yp++++  l + +   ++ ++d+++++ + d++g
     KIR65760.1 212 LMLGHGLAVQALRASRPDAQLGITVNLYPVTPATDSPADADAARRIDALANRFFLDPVLRGSYPADLQADLASVTDFGHVLDGDLATISTPLDLVG 307
                    ************************************************************************************************ PP

                    EEEEEEEEEEE--......-STT---SSGGGGG-...SBSS-B-SSSS-B-HHHHHHHHHHHHHTS----EEEEE----EE-BSSSHHH--HHHHH CS
  Glyco_hydro_1 292 lnyYtsrlvknke...seeaslskteekkleeev...dpslpktdigwiiepeglrkllellkkeYqklpiyiteNGlgakdeieegkveDdkRid 381
                    +nyY++++v++     +++a  ++ +    +e v    + +p td++w+i++ gl + le+++++Y++lp+y+teNG ++ d++++g+v+D++R+ 
     KIR65760.1 308 INYYSRHVVAAPVegeQPQAYWRAPTCWPGSEDVrfvTRGVPVTDMDWEIDAPGLVETLERVHRDYTDLPLYVTENGSAFVDTVVDGQVDDTDRLA 403
                    *****999987551112233223333223333335668999******************************************************* PP

                    HHHHHHHHHHHHHHTT--EEEEEEE-SB----GGGTTSEE--SEEEETTTTTEEEE-HHHHHHHHHHH-SS CS
  Glyco_hydro_1 382 YlkehlnevkkaiedgvdlkgYvawsllDnfewaegyskrfGlvyvdrnetleRtpkkSakwykeviekng 452
                    Y+ +hl +++ ai  gv l+gY+awsl+Dnfewa+gy+krfG+vyvd ++++ R+pk Sa+wy+evi++ng
     KIR65760.1 404 YFDSHLRAAHAAIGAGVPLRGYFAWSLMDNFEWAWGYTKRFGMVYVD-YDSQVRIPKSSARWYAEVIRRNG 473
                    ***********************************************.9*******************997 PP

>> Topo_C_assoc  C-terminal topoisomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     3e-05      0.27      24      68 ..     399     444 ..     397     446 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3e-05
  Topo_C_assoc  24 tSkinYlDPRitvawck.khdvpiekiFsktlleKfaWAmevdedf 68 
                   t ++ Y D+ + +a +    +vp+   F+ +l++ f+WA   ++ f
    KIR65760.1 399 TDRLAYFDSHLRAAHAAiGAGVPLRGYFAWSLMDNFEWAWGYTKRF 444
                   66789*********9762689******************9876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 3162.81
//
Query:       KIR65761.1  [L=403]
Description: acyl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-35  122.9   3.9      2e-35  122.2   3.9    1.4  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    9.6e-22   77.0   0.0    1.6e-21   76.3   0.0    1.4  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    5.7e-13   49.3   2.1    5.7e-13   49.3   2.1    1.8  2  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
    3.8e-12   46.9   0.6    1.2e-11   45.3   0.1    2.1  2  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
  ------ inclusion threshold ------
       0.12   12.7   0.0       0.23   11.7   0.0    1.5  1  Cyclase        Putative cyclase


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.2   3.9   5.7e-39     2e-35       1     149 [.     248     398 ..     248     399 .. 0.98

  Alignments for each domain:
  == domain 1  score: 122.2 bits;  conditional E-value: 5.7e-39
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------..HHHHHHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd..raeasmaKlf 94 
                    g Gf++a+ +l  +R+ ++++ +g+a+rale + ++a++r afg+pl+++ +vre +ae ++++e+arllv+++a+++d+ +++    e++++K+ 
     KIR65761.1 248 GAGFAIAQARLGPGRIHHCMRLVGMAERALELLCRRANQRIAFGRPLAEQGVVREWIAESRVRIEQARLLVLKTAWLMDTVGNKgaHTEIQAIKIA 343
                    68********************************************************************************999999******** PP

                    HHHHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHHH CS
  Acyl-CoA_dh_1  95 aselaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarrl 149
                    ++ +a++v+d+a+q +GgaG+++++p++ l+ +ar+lr+++G++e++r+ +a+r 
     KIR65761.1 344 TPAMAEWVIDKAIQGYGGAGVSQDTPLAGLWAQARTLRLADGPDEVHRSSLAKRE 398
                    ****************************************************996 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   4.6e-25   1.6e-21       1      90 [.     134     226 ..     134     236 .. 0.90

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 4.6e-25
                    EEE---SS-.SS-GGG---EEEEETT.EEEEEEEEEEEETTTT..-SEEEEEEETS---.----EEEEEEE..GGGEEE-----BSS-TTS-EE CS
  Acyl-CoA_dh_M   1 afalTEpqa.GsdvasvkttaaerdggeyvlnGeKiwitnaai..atlalvlartekpd.rarglslflvprdapgvsvrrieeklGlrglptg 90 
                    af++TEp++  sd+++++t  + rdg++yv++G+K+w+++a++  +++++v+++t+  + r+r+ s++lvprd+pgv+vrr  +  G+ ++p+g
     KIR65761.1 134 AFCMTEPDVaSSDATNIAT-RIVRDGDSYVIDGRKWWSSGAMDprCEIFIVMGKTDPGAdRHRQQSMILVPRDTPGVTVRRGMTVFGYSDAPHG 226
                    79******989********.88888999***************99*********5444479******************9999*****999965 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1         1   3.6e+03      51      86 ..      24      58 ..      14      61 .. 0.71
   2 !   49.3   2.1   1.6e-16   5.7e-13       3     125 ..     265     379 ..     263     382 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1
                   HHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHH CS
  Acyl-CoA_dh_2 51 ldAAralleraaaraealaaagkevtvedraearra 86
                   ++ A+a++++++a+a +   a+++v +e++aearr 
     KIR65761.1 24 VHPAEAVHAEQVAAAGD-PWARSPVLEELKAEARRR 58
                   56677777777777666.455666778888888876 PP

  == domain 2  score: 49.3 bits;  conditional E-value: 1.6e-16
                    HHHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   3 iaavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaav 98 
                    +++  +G+A++al+ +  +a++r+   +g++la++ ++   +ae++ r+++Ar+l++++a+ +  + ++g++      +e+++ ++++  +a  ++
     KIR65761.1 265 HCMRLVGMAERALELLCRRANQRIA--FGRPLAEQGVVREWIAESRVRIEQARLLVLKTAWLMDTVGNKGAH------TEIQAIKIATPAMAEWVI 352
                    67889********************..***********************************8888888888......6***************** PP

                    HHHHHHCGGGGGBTT-HHHHHHHHHHH CS
  Acyl-CoA_dh_2  99 dalfeaaGgsalrkesplqRlwRDaha 125
                    d++++  Gg ++ ++ pl  lw  a++
     KIR65761.1 353 DKAIQGYGGAGVSQDTPLAGLWAQART 379
                    *****************9877766666 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.1   3.4e-15   1.2e-11       4     113 .]       9     130 ..       6     130 .. 0.80
   2 ?   -1.8   0.0       1.4   4.9e+03      39      57 ..     227     246 ..     219     258 .. 0.71

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 3.4e-15
                    HHHHHHHHHHHHHHHTHH....HHHHHHHHTS..........GHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHH..H-HHHHHHHH CS
  Acyl-CoA_dh_N   4 qealrdtvrefaeeelap....haaewdeege..........fprelwkklaelGllgitvpeeygGagldyleaaivaeelar..adaglalllg 83 
                     e+lr+++  f+ee + p    ha+++    +          + +el  ++ + Gl+++ +p+   Gagl++l++a +ae  +r  + a+ a+  +
     KIR65761.1   9 TEKLRARLGTFLEECVHPaeavHAEQV----AaagdpwarspVLEELKAEARRRGLWNLFLPDPRYGAGLTNLQYAPLAELTGRspHLAPEAVNCA 100
                    578999999999999988333222222....2344466665455888999999*********9999******************655556666677 PP

                    HHHHTTHHHHHHHS-HHHHHHHHHHHHTTS CS
  Acyl-CoA_dh_N  84 vhsslvapailrfGteeqkrryLpklasge 113
                    + ++ +++ +++fG+e+q++r+L++l++ge
     KIR65761.1 101 APDTGNMELLAEFGSEAQRDRWLKPLLEGE 130
                    7999999*********************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.4
                    HHHHTTCTSTTS-.GGGTS- CS
  Acyl-CoA_dh_N  39 klaelGllgitvp.eeygGa 57 
                     +ae +++g+ vp e   Ga
     KIR65761.1 227 GHAEIDFTGVRVPaENLVGA 246
                    57999999999994333344 PP

>> Cyclase  Putative cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.5e-05      0.23      72     129 ..     299     361 ..     259     368 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.5e-05
     Cyclase  72 dleaalakqgveikpgdivlirTgwskrl.....edkekyrn....pglseeaaewlaekgvkavGv 129
                  +++++a+++v+i++   ++++T w         + +    +       ++++aew+++k +++ G 
  KIR65761.1 299 VVREWIAESRVRIEQARLLVLKTAWLMDTvgnkgA-HT---EiqaiKIATPAMAEWVIDKAIQGYGG 361
                 5789*********************8776654321.12...133346779************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3163.49
//
Query:       KIR65762.1  [L=378]
Description: acyl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-42  144.2   4.6    8.9e-42  143.7   4.6    1.3  1  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.7   4.6     5e-46   8.9e-42       3     214 ..      47     282 ..      45     310 .. 0.93

  Alignments for each domain:
  == domain 1  score: 143.7 bits;  conditional E-value: 5e-46
                 EEE--.SSCEEEEEEETT-....-EEEEEE-TT...S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS.....HHHHH CS
         APH   3 relsggasnrtylvttpag....ryvlrrnppa...raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr.....klsaa 89 
                 r ++gg sn ty +  ++g    ++vlrr+p +    +a +++re+++  +La + vpvP++l ++ d +++g +f+l+e v+g++++      +l+a 
  KIR65762.1  47 RLIAGGKSNLTYALRVGEGatgrEVVLRRPPLGhvlATAHDMAREHRIISALAPTAVPVPAALLLCPDPAVLGAPFYLMEKVDGEVFRSrsqtdALTAG 145
                 7899********99977755678**********8888999999******************************************************** PP

                 HHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S.SS-EEEE-SS-SGGGEEEC...... CS
         APH  90 qlpellealgeflaalhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallpg.elptvllHgDlhpgNllvd...... 181
                 q+++l+ a+ ++la+lh+vdpaa +ladf+++  +l rq+ +++a+l++s+ ++ l  ++e ++aala  +p  + + +++HgD++++Nll +      
  KIR65762.1 146 QRRDLAMAMMDTLADLHAVDPAAVGLADFGRPEGFLGRQVRRWAAQLDQSRSRP-LPGIDE-LRAALAGSVPEgANAGRIVHGDYRLDNLLATvgadps 242
                 ******************************************************.******.************************************* PP

                 .........TTEEEEE---TT-EEEECCHHHHCCHHHCSC CS
         APH 182 .......pddgrvtGviDfedaglgpplyDlavllrswts 214
                        ++   v++v+D+e+a+lg+pl+Dl+ ll++w+ 
  KIR65762.1 243 adgtggtAGAVSVRAVLDWEMATLGDPLADLGLLLTYWDV 282
                 *999988888888**********************88974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2927.08
//
Query:       KIR65763.1  [L=235]
Description: amino acid-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00035   20.3   0.7    0.00066   19.4   0.1    1.9  2  ACT       ACT domain
    0.00076   20.0   0.0     0.0013   19.3   0.0    1.3  1  ACT_4     ACT domain


Domain annotation for each model (and alignments):
>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   7.4e-08   0.00066       3      38 ..       5      40 ..       3      68 .. 0.84
   2 ?   -3.1   0.1      0.82   7.4e+03      10      16 ..     110     116 ..     106     116 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.4e-08
                EEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEEST CS
         ACT  3 lrvgvpDrPGlLarvfgaladrgiNidsieqrssed 38
                +rv +pDrPG+L++v+++l+  g  i+ + + +   
  KIR65763.1  5 VRVTLPDRPGTLGQVARTLGVSGADIVQVVVLERLG 40
                89******************9999999998877665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.82
                 STTHHHH CS
         ACT  10 rPGlLar 16 
                 +PGlLa+
  KIR65763.1 110 VPGLLAA 116
                 69**995 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.4e-07    0.0013       8      76 ..       4      71 ..       1      72 [. 0.96

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.4e-07
       ACT_4  8 rleveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdvehLsrviakLraipgVi 76
                r++v+  dr+g L+++++++  ++a+iv v + +r   g a  ++tv    ++ ++r++a+L aipgV 
  KIR65763.1  4 RVRVTLPDRPGTLGQVARTLGVSGADIVQVVVLERL-GGRAVDDFTVVWPGASRVERLLAGLAAIPGVR 71
                789*******************************86.9*****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1767.40
//
Query:       KIR65764.1  [L=354]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-08   33.9   0.1    8.9e-08   32.4   0.1    1.8  2  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.6e-06   26.6   0.1    9.6e-06   25.3   0.1    1.8  1  ACT              ACT domain
    4.8e-05   24.1   0.0    9.5e-05   23.1   0.0    1.5  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    0.00011   22.1   0.1    0.00019   21.4   0.1    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0015   18.4   0.4     0.0054   16.7   0.2    2.0  2  FR47             FR47-like protein
     0.0019   18.6   0.0     0.0059   17.0   0.0    1.8  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0052   16.7   0.1      0.025   14.5   0.1    2.2  1  ACT_6            ACT domain
  ------ inclusion threshold ------
      0.055   14.1   0.0       0.15   12.7   0.0    1.7  1  ACT_4            ACT domain
        4.8    7.3  12.0       0.26   11.4   3.2    2.5  2  Acetyltransf_6   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         2   4.1e+03      73      84 ..      88      99 ..      70     144 .. 0.75
   2 !   32.4   0.1   4.5e-11   8.9e-08      44     114 ..     254     319 ..     225     321 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2
                    TTSSHHHHHHHH CS
  Acetyltransf_1 73 rgkGlGsaLlea 84
                    r  Gl+++L+++
      KIR65764.1 88 RVLGLATRLVRD 99
                    556777777653 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 4.5e-11
                     EEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHH CS
  Acetyltransf_1  44 liGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYek 114
                     +++++ ll   d    +a++  l V+ +++++G+G+aLl+ l+++a++ g+  +vl+v++ n+a+ r +++
      KIR65764.1 254 VVAMANLLVEGD----EAEV-ALLVRDDWQRRGVGTALLRRLVRHAERAGLAGLVLHVQAENTAMLRTLRR 319
                     555555555555....5666.99****************************999**********9998865 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   4.8e-09   9.6e-06       3      62 ..       6      64 ..       4      66 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 4.8e-09
                EEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHH CS
         ACT  3 lrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevleal 62
                +r  v DrPG L+ +++ la rg+Ni  ++++++e + a   f+v+ +d+ d + +++a+
  KIR65764.1  6 IRATVDDRPGYLSVLTASLALRGVNILTVQVHTTEVG-AVDDFLVDAPDTLDEAGLIAAV 64
                78899*******************************8.8888888888888888777766 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   4.8e-08   9.5e-05      74     135 ..     260     320 ..     224     321 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4.8e-08
  Acetyltransf_3  74 leeedeeaelgymlapsfwgkGyateavralleyafeelglerlvavidkeNeaSirvlekl 135
                     l  e +eae+ ++++++++++G++t  +r l+++a e+ gl  lv ++++eN+a+ r l++l
      KIR65764.1 260 LLVEGDEAEVALLVRDDWQRRGVGTALLRRLVRHA-ERAGLAGLVLHVQAENTAMLRTLRRL 320
                     3344445***********9****************.8889*****************99986 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   9.6e-08   0.00019      57      97 ..     271     312 ..     250     314 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.6e-08
  Acetyltransf_10  57 lfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspya 97 
                      l V+++++++G+g+aLl ++ ++ae++g++   l+v+a ++a
       KIR65764.1 271 LLVRDDWQRRGVGTALLRRLVRHAERAGLAGlVLHVQAENTA 312
                      78**************************99999999999987 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.2   4.3e+03      34      44 ..      88      98 ..      83      99 .. 0.82
   2 !   16.7   0.2   2.7e-06    0.0054      25      75 ..     269     320 ..     249     327 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.2
                -SSSHHHHHHH CS
        FR47 34 rrrGlgsrlvk 44
                r  Gl++rlv+
  KIR65764.1 88 RVLGLATRLVR 98
                667******97 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.7e-06
                 EEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-.EEEEEETT-HHHHHHHHHH CS
        FR47  25 galqvlpehrrrGlgsrlvkalakeiaergkt.vllvvvasNtpsirlyekl 75 
                  al v+++ +rrG g+ l + l ++  ++g   ++l+v+a+Nt+  r + +l
  KIR65764.1 269 VALLVRDDWQRRGVGTALLRRLVRHAERAGLAgLVLHVQAENTAMLRTLRRL 320
                 5899************************996526778999999877666665 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.8   7.5e+03      12      12 ..      87      87 ..      68     110 .. 0.52
   2 !   17.0   0.0     3e-06    0.0059      25      52 ..     266     298 ..     237     319 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.8
                    T CS
  Acetyltransf_7 12 g 12
                     
      KIR65764.1 87 T 87
                    2 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 3e-06
                     TCTEE..EEE-GGGTTSSHHHHHHH.H...TT.SE CS
  Acetyltransf_7  25 aeitr..laVdpeyrgkGiGraLle.a...ae.kg 52 
                     +   +  l V+ +++++G+G+aLl+ +   ae  g
      KIR65764.1 266 EA--EvaLLVRDDWQRRGVGTALLRrLvrhAErAG 298
                     23..23599***************95344322433 PP

>> ACT_6  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.3e-05     0.025       5      36 ..       6      37 ..       6      66 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
       ACT_6  5 itvtGpdrpGltasLtsvlaefgvnilDieqa 36
                i++t +drpG ++ Lt+ la  gvnil++++ 
  KIR65764.1  6 IRATVDDRPGYLSVLTASLALRGVNILTVQVH 37
                78999***********************9876 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.4e-05      0.15       8      43 ..       5      40 ..       3      50 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.4e-05
       ACT_4  8 rleveaedrkglLaditqviseekanivsvnaktrk 43
                r++ ++ dr+g L+ +t+ ++  ++ni  v+++t++
  KIR65764.1  5 RIRATVDDRPGYLSVLTASLALRGVNILTVQVHTTE 40
                7999*****************************965 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   1.1      0.23   4.7e+02      38      91 ..      73     128 ..      37     168 .. 0.61
   2 ?   11.4   3.2   0.00013      0.26      26     132 ..     192     303 ..     172     312 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.23
  Acetyltransf_6  38 fraqwarrpdvfadp.ltraflrdllaalaargalrlyvlrldgr..pvAvalglrs 91 
                     ++a+ ++r +++  p ++  + ++l+++++a+g +  + l +d+     Av++g ++
      KIR65764.1  73 WVARSEAR-GLADQPtRVLGLATRLVRDPDAAGEALRTLLGADEVtwRPAVVAGGIA 128
                     34555555.555444366679999999998888877666666652223344444444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00013
  Acetyltransf_6  26 tdpedleallelfraqwarr.....pdvfadpltraflrdllaalaargalrlyvlrldgr...pvAvalglrsgdrlyywlggydpelaklspg 112
                     +++ dl  +lel+ a  a++      +++a p++ ++ r l +a   +  l+ ++   +g    +vA+a +l+ gd +   l   d ++ + ++g
      KIR65764.1 192 ATAGDLTGVLELHGACSAGTlhrryLGGAALPAPARLGRLLEPAQ--GLTLVATATGSGGAaepVVAMANLLVEGDEAEVALLVRD-DWQRRGVG 283
                     455555555555544444444435655555566666666553332..444444444455545669*************99998888.9******* PP

  Acetyltransf_6 113 llllweliedaaeeGlrrfd 132
                     + ll++l+++a + Gl+ + 
      KIR65764.1 284 TALLRRLVRHAERAGLAGLV 303
                     ***************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2643.21
//
Query:       KIR65765.1  [L=265]
Description: hypothetical protein TK50_10525 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.018   15.0   1.6      0.035   14.0   1.6    1.5  1  Gram_pos_anchor  LPXTG cell wall anchor motif
       0.18   11.8  14.8      0.061   13.3  11.9    1.7  2  Trypan_PARP      Procyclic acidic repetitive protein (PARP)
        1.1    7.9   2.1        1.6    7.3   2.1    1.3  1  Ndc1_Nup         Nucleoporin protein Ndc1-Nup
        2.4    8.5   4.9        4.1    7.8   4.9    1.3  1  BES1_N           BES1/BZR1 plant transcription factor, N-term


Domain annotation for each model (and alignments):
>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.6   7.9e-06     0.035       7      40 ..     225     258 ..     221     260 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.9e-06
                      -XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX CS
  Gram_pos_anchor   7 kqLPkTGengnifltaaGllallggllL.lvkrRK 40 
                        LP TG  + +++ + G++++ gg++L  ++rR+
       KIR65765.1 225 SDLPLTG-VAVTGMALTGVALVGGGVALmTLRRRR 258
                      67*****.********************8777776 PP

>> Trypan_PARP  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.93   4.2e+03      20      47 ..      19      46 ..       8      63 .. 0.59
   2 ?   13.3  11.9   1.4e-05     0.061      48     113 ..     145     211 ..     124     242 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.93
  Trypan_PARP 20 agvgfaaaaegpedkgltkggkgkekgt 47
                 a + +a+ a  ++  gl    +gk+ g 
   KIR65765.1 19 ACLALATPAWASATIGLKSAHQGKKAGY 46
                 4455666666666777777777765553 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.4e-05
  Trypan_PARP  48 kvsdddtngtdpepepepepepepepe..pepepetepeeepepepepepepepepepepepepepga 113
                  +vs+  ++gt p+p p p p p p p     pep  +p  +  pep   p     p     p p   a
   KIR65765.1 145 NVSH-TCKGTVPKPTPTPTPTPTPTPSvsESPEPSESPSASESPEPSESPSASESPSASESPTPSDSA 211
                  3443.567898888888888888888733445554444444444444444444445544455554444 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   2.1   0.00035       1.6     356     424 ..     155     218 ..     135     257 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00035
    Ndc1_Nup 356 papkaapskapknkasapvkelprlsksplkkkddeifgnsltaeaspkssssskegvekalsslaksp 424
                 p+p+++p   p+ +++++v+e+p+ s+sp+ +++ e      +++as ++s s + +++++ s++++  
  KIR65765.1 155 PKPTPTP--TPTPTPTPSVSESPEPSESPSASESPEPS---ESPSASESPSASESPTPSDSASPTTSPS 218
                 3333333..44455555555555555444444322222...2222333333333333333333333333 PP

>> BES1_N  BES1/BZR1 plant transcription factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.9    0.0009       4.1      55     132 ..     124     214 ..     114     230 .. 0.50

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0009
      BES1_N  55 reAGWvVeeDGTTyr............kgckppa...seasdvvgssasasvesslqaslkssalkspvesynaspassslrspasldsvvla 132
                 + AGW   +   T              kg+ p +   ++ + + + s+s s+e s ++s+++s   +p es  as++ s+ +sp+ +ds++ +
  KIR65765.1 124 TPAGWKLVDGSATISgtgddfnvshtcKGTVPKPtptPTPTPTPTPSVSESPEPSESPSASES--PEPSESPSASESPSASESPTPSDSASPT 214
                 567777666666666677777777777554443310122222333444444554444432222..2333333344444444466666655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 1770.64
//
Query:       KIR65766.1  [L=976]
Description: endoglucanase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     9e-140  466.7  26.1   1.4e-139  466.1  26.1    1.3  1  Glyco_hydro_9  Glycosyl hydrolase family 9
    3.2e-31  107.6  11.1    3.2e-31  107.6  11.1    3.6  4  CBM_2          Cellulose binding domain
    2.4e-24   85.5   7.8    3.6e-12   46.5   0.2    2.8  2  fn3            Fibronectin type III domain
    5.8e-08   33.0   0.0    1.2e-06   28.8   0.0    2.8  2  CBM_3          Cellulose binding domain
    1.2e-05   25.4   0.1     0.0069   16.5   0.0    2.5  2  fn3_2          Fibronectin type III domain
    0.00096   19.5   0.0       0.54   10.7   0.0    2.5  2  DUF2369        Uncharacterised conserved protein (DUF2369)


Domain annotation for each model (and alignments):
>> Glyco_hydro_9  Glycosyl hydrolase family 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  466.1  26.1  4.7e-143  1.4e-139       1     411 []      51     483 ..      51     483 .. 0.92

  Alignments for each domain:
  == domain 1  score: 466.1 bits;  conditional E-value: 4.7e-143
                    HHHHHHHHHHHHHHHB-BTTTTT-SBSS---BSTTTTCCCTS----SB--SSS--EEHHHHHHHHHHHHHHHHHCHHHHHHTT-HHHHHHHHHHHH CS
  Glyco_hydro_9   1 YaealkksllffeaqRsGklpennrvaWrgdshlkdgkdagvdlsGGwyDAGDhvKyvvpmafsvttLlwayeefpeayeaagdleeildeikwgl 96 
                    Yaeal+ksl f+eaq+sGk p++nrv+Wrgds+l+dg+d gvdl+GGwyDAGDhvK+++pmafs+t+L+w++ e++++y a+g+l+++l+++++  
     KIR65766.1  51 YAEALQKSLFFYEAQQSGKKPAWNRVSWRGDSALTDGSDVGVDLTGGWYDAGDHVKFGFPMAFSATMLAWGAVEYRDGYVASGQLTHLLNNLRFVN 146
                    9*********************************************************************************************** PP

                    HHHHHTETCTTEEEEEES-HHHHHT--S-GGG--.---EEEEETTC--HHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHH-.-.T CS
  Glyco_hydro_9  97 dyllkmhtkdgvlyvqvGdgdaDhklWgppedmdtprpvykvdesnpgtdaaaetAAalAaasrvfkksdpayAaklleaAkklyafadkyr.kya 191
                    dy++k+h+ ++vly qvG+gd Dhk+Wgp+e m ++rp+yk+d+s  g+d+a+etAAa+Aa+s+vf+ +d+ayA+kll++Ak+ly+fad+ r +y+
     KIR65766.1 147 DYFVKAHPAPNVLYGQVGKGDDDHKWWGPAEVMPMARPAYKIDSSCGGADLAGETAAAMAASSMVFRPTDAAYADKLLTHAKQLYTFADTVRkSYH 242
                    ********************************9999******************************657***********************8899 PP

                    T--TGTTTTTTS--.SS.HHHHHHHHHHHHHHH--HHHHHHHHHCC.TTSST............BTTB-HHHHHHHHHHHHHHSHHCC....H... CS
  Glyco_hydro_9 192 dsiaeaagggfYns.sd.kDellwAaawlykatkeasylddaksyyskeaas.......ssf..sWdnkvagaqlllagllslalkeekakasiea 276
                    + i++a   +fY+s s+ +Del+w+a+wly+at++a+yl++a+++y+k  ++       +++   Wdnk  ga++lla+l+     ++k  ++ ++
     KIR65766.1 243 ECITDAT--SFYKSwSGwQDELVWGAIWLYRATGDAAYLTKAENEYDKLGTEpqsttrsYKWtiAWDNKQFGAYVLLANLTG----KQKYVDDANR 332
                    9776554..5****999**************************999766544999999833456*************88533....3345667788 PP

                    ..HHH...HHHHHHH...B-TTS-BES-SSSHHHHHHHHHHHHHHHHH....TS.S..HHHHHHHHHHHHHHTTTTTSSBSBTTSSSSB-S--B-H CS
  Glyco_hydro_9 277 aadky...kseaegy...ytpgglaylyewgslryvanaafllllaad....ltgdakeyrdfaksqldyllGrNplgqsYvvGygekspknphhr 362
                    ++d +       +g    y+pgg+a+l++wg lry+ n+af +l+++d      + +++y+dfa +q++y lG+Np++ sY +G+g+++pknphhr
     KIR65766.1 333 WLDYWtvgV---NGAkvnYSPGGMAVLDSWGALRYASNTAFAALVYSDkttdA-TRKTRYHDFAVRQINYALGDNPRKSSYQIGFGANAPKNPHHR 424
                    888885542...33344579***************************955532.55667************************************* PP

                    HHHT-.........S-SS--TT-B-S--.-TTS-----TT-CCCHB--HHHHHHHHHHH CS
  Glyco_hydro_9 363 aasgs.........pnpnvlpGalvgGP.nandsyvDdresystnEvaidynAplvgal 411
                    +a+gs         ++++vl+GalvgGP +and y+D+r++y +nEva+dynA++++al
     KIR65766.1 425 TAHGSwwdsqtvptETRHVLYGALVGGPsSANDAYTDSRSDYVMNEVATDYNAGFTSAL 483
                    **********99888*************556************************9986 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.2       5.6   1.7e+04      26      38 ..     296     308 ..     294     315 .. 0.73
   2 ?   -3.4   0.1       4.1   1.2e+04      29      55 ..     341     366 ..     335     374 .. 0.63
   3 ?   -1.2   0.6      0.87   2.6e+03      22      40 ..     785     803 ..     769     820 .. 0.70
   4 !  107.6  11.1   1.1e-34   3.2e-31       1     101 []     873     973 ..     873     973 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 5.6
                 SS-EES-EEEEE- CS
       CBM_2  26 ssaingWtvewtl 38 
                 ++   +Wt+ w+ 
  KIR65766.1 296 TTRSYKWTIAWDN 308
                 5556689999975 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.1
                 EES-EEEEE--TTEEEEEEESEEEEEE CS
       CBM_2  29 ingWtvewtlpagqrvtqlWnatvsqs 55 
                 +ng +v+++ p g  v ++W a   +s
  KIR65766.1 341 VNGAKVNYS-PGGMAVLDSWGALRYAS 366
                 455555555.45788888887765555 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.87
                 EE-SSS-EES-EEEEE--T CS
       CBM_2  22 kNsgssaingWtvewtlpa 40 
                  N g +  + W+v+w l++
  KIR65766.1 785 DNVGVAGYQVWKVTWPLHS 803
                 5778888888999998863 PP

  == domain 4  score: 107.6 bits;  conditional E-value: 1.1e-34
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE-.-TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETT CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtl.pagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnG 98 
                 +++ y+ ts+W+tGf+a++t++N+g +a+ngW++ +t+ +agq+vtq W+a+++q+G++vta+n+ +N+ +apG+s+++Gf+g++tg n++pt+ft+nG
  KIR65766.1 873 CKVAYT-TSDWSTGFSANITITNTGATALNGWSLAFTFpNAGQKVTQGWSANFTQTGTAVTASNAAYNAALAPGASTTLGFNGTHTGANPKPTAFTLNG 970
                 667776.67*****************************779********************************************************** PP

                 EE- CS
       CBM_2  99 aaC 101
                 +aC
  KIR65766.1 971 SAC 973
                 **9 PP

>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.2   1.2e-15   3.6e-12       3      82 ..     661     738 ..     659     742 .. 0.89
   2 !   41.0   2.6   6.2e-14   1.8e-10       1      80 [.     761     835 ..     761     838 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 1.2e-15
                 ECEEEEEEESSSEEEEEEE-CS.SSSSTEEEEEEEEEETTSTSTEEEEEECSTSS.EEEEESSSTTEEEEEEEEEEETSEEE CS
         fn3   3 PsnlsvsevtstsltvsWeppk.dgggpitgYeveyrekgseeewneftvprttt.svtltgLkpgteYevrVqavngggeg 82 
                 P+ ++vs++++ts+t++W +++ +gg+ + gY v+ ++ gs        + rttt svt+ +L++ ++Y+++V+a+ g+g+ 
  KIR65766.1 661 PGAPTVSAISPTSVTLTWPASTdTGGSGLAGYDVTQETIGSDA----LMLHRTTTnSVTVANLTAARNYRFWVRARDGAGNN 738
                 899*******************************999997665....777777777***********************854 PP

  == domain 2  score: 41.0 bits;  conditional E-value: 6.2e-14
                 TCECEEEEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTSTEEEEEECSTSSEEEEESSSTTEEEEEEEEEEETSE CS
         fn3   1 saPsnlsvsevtstsltvsWeppkdgggpitgYeveyrekgseeewneftvprtttsvtltgLkpgteYevrVqavnggg 80 
                 saP+ +++s++tst +t+sW+p+ + +  + gY+v ++ ++  + ++  tv++t+  +t+tgL+p+t Y + + av ++g
  KIR65766.1 761 SAPGTPTASNITSTGVTLSWSPS-TDNVGVAGYQV-WKVTWPLH-SVVATVTGTS--HTVTGLTPDTSYPFYIVAVDAAG 835
                 79*********************.79*********.77776665.8888888888..*******************9995 PP

>> CBM_3  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0     4e-10   1.2e-06       8      82 .]     516     585 ..     510     585 .. 0.85
   2 ?    0.2   0.0      0.35     1e+03       9      30 ..     880     901 ..     875     907 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 4e-10
                 ECSETTEEEEEEEEEETSSS.-EEGGGEEEEEEEE-SGCCSGEEEEEEEETTSGGGEEEEEEEEEEETTCEEEEEE CS
       CBM_3   8 asestntieikfkitNtgaw.aidlsdlkvRYyftldasekdvtvscdyaqlgssnvsgkfvklddpegadyYvei 82 
                  ++++ ++ +k+ ++N++a  a+ l++ k+RYyf  + ++++v+v+  y q+ + + s   ++l   +g + Yve+
  KIR65766.1 516 MQAEPRATGLKAIVYNKSAFpARALTNGKFRYYFRPE-GSTAVQVTPGYTQG-CPSPS-AAKQL---SGDIWYVEV 585
                 566789999****************************.99**********99.66666.56666...788999886 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.35
                 CSETTEEEEEEEEEETSSS-EE CS
       CBM_3   9 sestntieikfkitNtgawaid 30 
                 s+ ++  + +++itNtga+a +
  KIR65766.1 880 SDWSTGFSANITITNTGATALN 901
                 5556778899*******99876 PP

>> fn3_2  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0034        10       9      79 ..     665     737 ..     656     749 .. 0.78
   2 !   16.5   0.0   2.3e-06    0.0069       9      89 .]     767     848 ..     759     848 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0034
       fn3_2   9 kvknvtqtsvvleWdk.lelataklksLslykngqrlgkip.nplkntstKlsgLsvdteyefqlvlkttaGt 79 
                  v+++  tsv+l W    + + + l   ++ ++   + ++  + ++++s+ ++ L+  ++y+f+++ +  aG+
  KIR65766.1 665 TVSAISPTSVTLTWPAsTDTGGSGLAGYDVTQETIGSDALMlHRTTTNSVTVANLTAARNYRFWVRARDGAGN 737
                 4678999*******8527899999***999999877666543667788999***************9999996 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2.3e-06
       fn3_2   9 kvknvtqtsvvleWdklelataklksLslykngqrlgkipnplkntstKlsgLsvdteyefqlvlkttaGt..yksekikvrt 89 
                   +n+t t v+l W +    +  +   +++k    l ++  +++ ts  ++gL+ dt+y f +v   +aG+    s +i+vrt
  KIR65766.1 767 TASNITSTGVTLSWSPS-TDNVGVAGYQVWKVTWPLHSVVATVTGTSHTVTGLTPDTSYPFYIVAVDAAGNpsVVSPSISVRT 848
                 468***********995.57788999***************************************999996336788888887 PP

>> DUF2369  Uncharacterised conserved protein (DUF2369)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0055        16       5      34 ..     710     739 ..     708     751 .. 0.89
   2 !   10.7   0.0   0.00018      0.54       7      45 ..     811     849 ..     806     865 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0055
     DUF2369   5 kktkvtlseLkpdtqYyfdVFvvdqkrnts 34 
                 ++++vt+ +L+  ++Y+f V ++d + n+s
  KIR65766.1 710 TTNSVTVANLTAARNYRFWVRARDGAGNNS 739
                 679*******************99988876 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00018
     DUF2369   7 tkvtlseLkpdtqYyfdVFvvdqkrntssaytgttaqtr 45 
                 t++t+++L+pdt+Y f + +vd + n s++     ++t 
  KIR65766.1 811 TSHTVTGLTPDTSYPFYIVAVDAAGNPSVVSPSISVRTL 849
                 89************************9999887777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (976 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 6619.19
//
Query:       KIR65767.1  [L=66]
Description: hypothetical protein TK50_10545 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.011   15.5   1.4        2.4    8.1   0.1    2.2  2  C1_1      Phorbol esters/diacylglycerol binding domain (C1 do
       0.07   12.7   1.2          7    6.3   0.1    2.3  2  zf_UBZ    Ubiquitin-Binding Zinc Finger
      0.096   12.7   4.4       0.37   10.8   4.4    1.9  1  DZR       Double zinc ribbon


Domain annotation for each model (and alignments):
>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   0.00041       2.4       9      28 ..       6      25 ..       1      29 [. 0.76
   2 ?    7.2   0.1   0.00075       4.5       6      21 ..      30      45 ..      28      60 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00041
                SS--B-TTT-SB--SSSS-E CS
        C1_1  9 kqptfCkhCgeflwgkekqg 28
                 +  +C+ Cge+  g+++ +
  KIR65767.1  6 TMAVWCDRCGEPADGGGHAA 25
                6889*******996666655 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00075
                E--SS--B-TTT-SB- CS
        C1_1  6 rnfkqptfCkhCgefl 21
                r ++ p fC+ C+  +
  KIR65767.1 30 RELEPPRFCARCRRRM 45
                678899******9988 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1    0.0023        14       5      10 ..      11      16 ..       8      19 .. 0.86
   2 ?    6.3   0.1    0.0012         7       4      14 ..      37      47 ..      35      51 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0023
      zf_UBZ  5 CerCgk 10
                C+rCg+
  KIR65767.1 11 CDRCGE 16
                *****8 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0012
      zf_UBZ  4 lCerCgkeipe 14
                +C+rC +++ +
  KIR65767.1 37 FCARCRRRMKV 47
                8*****99976 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.4   6.3e-05      0.37      12      39 ..       8      46 ..       2      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.3e-05
         DZR 12 arfCseCgtklkavaa...........edrCpsCgekvd 39
                a  C++Cg++ +   +           +++C +C + ++
  KIR65767.1  8 AVWCDRCGEPADGGGHaacraarelepPRFCARCRRRMK 46
                567999999998777788899999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.46
# Mc/sec: 429.43
//
Query:       KIR65768.1  [L=331]
Description: biotin synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-15   57.7   0.1    5.4e-15   56.2   0.1    1.7  2  Radical_SAM   Radical SAM superfamily
    7.6e-12   45.2   0.0    2.2e-11   43.8   0.0    1.7  1  BATS          Biotin and Thiamin Synthesis associated domain
  ------ inclusion threshold ------
      0.075   12.5   0.0       0.14   11.6   0.0    1.4  1  His_biosynth  Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.1     9e-19   5.4e-15       4     165 ..      64     221 ..      62     223 .. 0.84
   2 ?   -1.9   0.0      0.62   3.7e+03     128     156 ..     253     280 ..     230     286 .. 0.71

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 9e-19
                  ESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTT.SEEEEEE...SSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   4 trgCnlrCsfCarpetvrregrgrslsveeileevkelkaekg.vkevilg...ggepllypdfvellerlaklavpgiritvetngtlpdeeklerl 97 
                  t gC+ +C+fC+++   ++ +r+  l++ +++e +k+  a  g ++++i+    g  p+++  +++    +a +  +++ i v ++ ++++ e++++l
   KIR65768.1  64 TGGCPEDCHFCSQSGLFASPVRSVWLDIPSLVEAAKQT-AATGaTEFCIVAavrG--PDARLMKQMREGVAAIR--AEVDIQVAASLGMLSQEQVDEL 156
                  68************999999999999999999999999.7999666666667544..55554444444444444..58******************** PP

                  HHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  98 lelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleelle 165
                  +++gv r++++le+  +  + + +  +h++ee++e+l++ re+g++ v+ + +++ Ge+ e++ e++ 
   KIR65768.1 157 VDMGVHRYNHNLETCRSY-FPNVV-TTHSWEERWETLRMVRESGME-VCCGGILGLGETVEQRAEFAA 221
                  ******************.*****.9********************.777777777899999988875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.62
                  HHHHHHHHHHHHTTSETEEEEEEEBTTTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 128 eevlealeklreagikrvvdrivglpGen 156
                  ++ l+a+ ++r a ++r++ r+ g++  +
   KIR65768.1 253 KDALRAIAAFRLA-MPRTILRYAGGREIT 280
                  5677777777777.777888888877666 PP

>> BATS  Biotin and Thiamin Synthesis associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   3.6e-15   2.2e-11       1      83 [.     232     320 ..     232     322 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 3.6e-15
                 E--B----TCCCC...........HHHHHHHHHHSTTSE.CCCTCHH-HHHHHH..HHHCCT--EEE-C---TTTGGGSESSTT-TCCCCHHHHHHT CS
        BATS   1 siprlrpikdtpl...........lkiiaalRlllPkag.illsgResaefrdq..lllklGansisagsktevggyaflttdgrsleedvkmleel 83 
                 ++++l+p ++tpl           l+ iaa+Rl++P++  + ++gRe    +      l  G+n++++g+        +ltt gr + +d+++l+el
  KIR65768.1 232 PLNFLNPRPGTPLgdrpvvegkdaLRAIAAFRLAMPRTIlRYAGGREITLGDLGtrDGLLGGINAVIVGN--------YLTTLGRPATDDLALLTEL 320
                 89*********************************************9987655443446**********........**************99987 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.4e-05      0.14      30     102 ..      93     167 ..      87     186 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
                   SHHHHHHHHHHHT-SEEEEEE.HHHHC.TTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEES CS
  His_biosynth  30 dpvelakryeeegadelhvvD.ldaak.egreanldlveeiaeevfipvqvGGGIrsledveelleagadkviig 102
                   + ve+ak+ +++ga+e+++v  + +   +  +++ + v++i+ ev+i+v    G  s e+v+el+++g+++   +
    KIR65768.1  93 SLVEAAKQTAATGATEFCIVAaVRGPDaRLMKQMREGVAAIRAEVDIQVAASLGMLSQEQVDELVDMGVHRYNHN 167
                   5689999999999999987741444433556788899********************************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2251.27
//
Query:       KIR65769.1  [L=387]
Description: cytochrome P450 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-19   70.6   0.0    1.4e-16   60.3   0.0    2.3  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0     6e-05       1.1     267     300 ..     221     254 ..     212     257 .. 0.87
   2 !   60.3   0.0   7.7e-21   1.4e-16     326     427 ..     262     353 ..     260     357 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 6e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH CS
        p450 267 vlellfaGvdTtsstlswaLyeLaknPevqeklr 300
                 ++ ll+aG++Tts  l+  L+ L   P v + lr
  KIR65769.1 221 LFFLLVAGQETTSQFLTLLLHRLTAEPAVRAGLR 254
                 56689**********************9988776 PP

  == domain 2  score: 60.3 bits;  conditional E-value: 7.7e-21
                 HHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHH CS
        p450 326 avikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelkl 424
                  v++E LRl p+++ +  R++  d++++g  + +Gt v+++l   +rdp+v   P+eF+p+   ++         ++l+FGaG++ C+G +lAr+e  +
  KIR65769.1 262 DVVEEGLRLEPPIV-TWRRVAAVDTTLGGTPVAAGTSVVLWLARAGRDPQVVAAPDEFRPGQPGSR---------RHLAFGAGAHRCVGAQLARLEAAV 350
                 599***********.999******************************************987666.........58*******************999 PP

                 HHH CS
        p450 425 fla 427
                 ++a
  KIR65769.1 351 VVA 353
                 886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2768.25
//
Query:       KIR65770.1  [L=222]
Description: 50S ribosomal protein L11 methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-09   36.8   3.1    3.6e-09   36.4   3.1    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    4.8e-08   32.7   0.2    6.6e-08   32.3   0.2    1.1  1  MTS              Methyltransferase small domain
      4e-06   27.4   0.9    8.5e-06   26.4   0.9    1.5  1  Methyltransf_25  Methyltransferase domain
    1.6e-05   24.7   0.0    3.1e-05   23.8   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
    0.00047   19.8   0.5    0.00067   19.3   0.5    1.2  1  Cons_hypoth95    Conserved hypothetical protein 95
     0.0017   19.0   0.8     0.0027   18.3   0.8    1.3  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.045   13.6   0.0      0.055   13.3   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
      0.062   13.1   0.0      0.081   12.8   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
       0.14   11.9   0.1       0.17   11.6   0.1    1.2  1  Met_10           Met-10+ like-protein


Domain annotation for each model (and alignments):
>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   3.1   1.8e-12   3.6e-09     160     232 ..      73     144 ..      60     156 .. 0.84

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.8e-12
        PrmA 160 kegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellk..eekadviva 232
                  +g++vlD+  GSG+ aiaaa+ ga+ v a  +De Av + + Nae N+v+    +   +++l+  ++ a+v++a
  KIR65770.1  73 VAGRRVLDLASGSGLVAIAAARAGAAAVRAAEVDERAVAAVALNAEANGVRVDAAL---GDVLDgdAGDAEVVLA 144
                 56889********************************************9987744...4444323466777766 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.2   3.3e-11   6.6e-08      21     101 ..      60     142 ..      56     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 3.3e-11
                 HHHHHHCHCC....TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEE CS
         MTS  21 klLletlpke....lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdli 101
                 + L+++++++    + ++vlDl++G G++++a+a++    +v + +vd rA+++   n+ean+++v++   dvl+  + ++ +++
  KIR65770.1  60 QALARYVTDHpevvAGRRVLDLASGSGLVAIAAARAGAA-AVRAAEVDERAVAAVALNAEANGVRVDAALGDVLDGDA-GDAEVV 142
                 566666666666667889*************99997665.8*******************************998766.555555 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.9   4.3e-09   8.5e-06       1      94 [.      78     166 ..      78     168 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 4.3e-09
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      vLdl+ G+G +++a+a++ g+a v + +++e++++a++ +ae++g++v+   gd+ d +       +v++ g + + s++ ++++l+ + r+ +
       KIR65770.1  78 VLDLASGSGLVAIAAARA-GAAAVRAAEVDERAVAAVALNAEANGVRVDAALGDVLDGDAG--DAEVVLA-GDVFY-SEAMARRMLRFLLRAAR 166
                      9*****************.69*********************************9887755..5888888.66444.55677777777777666 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.5e-08   3.1e-05      22     155 ..      56     173 ..      53     179 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.5e-08
  Methyltransf_16  22 WdaavvlvkylekklakelganelsklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnknalkskvkvevLdWgeeleed 114
                      W  + +l+ y++       + + +++++vl+L sG+Glv +a+a++ + a v  + ++e ++  +  n e+n+      v+v++   g+ l  d
       KIR65770.1  56 WAGGQALARYVTD------HPEVVAGRRVLDLASGSGLVAIAAARA-GAAAVRAAEVDErAVAAVALNAEANG------VRVDA-ALGDVLDGD 135
                      7777777777777......6788999*******************9.99999998888756666666666654......44443.235556445 PP

  Methyltransf_16 115 llekeevDlilaaDcvYledslelLvkvLkellkkeskvlv 155
                             +++la D+ Y e +   +++ L +  ++   vlv
       KIR65770.1 136 A---GDAEVVLAGDVFYSEAMARRMLRFLLRAARSGARVLV 173
                      5...34689***************99999998887777776 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.5   3.4e-07   0.00067      40      89 ..      73     122 ..      61     139 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.4e-07
                    HCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT- CS
  Cons_hypoth95  40 iegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkl 89 
                    + g rvLDl +GsG +++ A+  ga+ + + e d++av+++  n e+ ++
     KIR65770.1  73 VAGRRVLDLASGSGLVAIAAARAGAAAVRAAEVDERAVAAVALNAEANGV 122
                    7899*************************************999988765 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.8   1.3e-06    0.0027       1      95 [.      79     172 ..      79     173 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.3e-06
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGl 93 
                      Ld+++G+G++a a a++g a v + ++++++++++  +a+ +g++v+   +d+ +     +   +v++  v+   +  ++ l+ + R  + g +
       KIR65770.1  79 LDLASGSGLVAIAAARAGaAAVRAAEVDERAVAAVALNAEANGVRVDAALGDVLDGDA--GDAEVVLAGDVFYSEAMARRMLRFLLRAARSGAR 170
                      8******************************************998889999988544..5699***********9999999999999999987 PP

                      EE CS
  Methyltransf_11  94 lv 95 
                      ++
       KIR65770.1 171 VL 172
                      65 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.7e-05     0.055       5     113 ..      76     177 ..      73     212 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.7e-05
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeie 98 
                       rvlDl++G+G  ++++a ++g  a v   + +e+a+     na+ +g+ +v    gd+ + +         ++l+ +v++  a     l+ + 
       KIR65770.1  76 RRVLDLASGSGLVAIAAA-RAGA-AAVRAAEVDERAVAAVALNAEANGV-RVDAALGDVLDGD--A--GDAEVVLAGDVFYSEAMARRMLRFLL 162
                      68****************.7774.8899*********************.6**********88..4..45999999999999999999999999 PP

  Methyltransf_31  99 rvlkpggilliedpr 113
                      r+ ++g ++l+ dp 
       KIR65770.1 163 RAARSGARVLVGDPG 177
                      999999999999887 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.1e-05     0.081      22     135 ..      74     192 ..      45     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-05
  Methyltransf_23  22 aggrvLdiGcGtGillevlrengf.svtgvDlspeaveiae...kakkaqkdqfdeqeaae......pqgkfdlIvlrevlehvpdppellrqi 105
                      ag rvLd++ G+G ++  +++ g+  v + + +++av+ ++   +   a+ + +d+           ++g  +++ + +v+++     + lr +
       KIR65770.1  74 AGRRVLDLASGSGLVAIAAARAGAaAVRAAEVDERAVAAVAlnaE---ANGVRVDAA---LgdvldgDAGDAEVVLAGDVFYSEAMARRMLRFL 161
                      567****************99999667799999999998754332...222222222...1233334778***************99******* PP

  Methyltransf_23 106 atllkpgGylllseplaslkedrllldw.ly 135
                       +  + g+++l+ +p++    ++++++  +y
       KIR65770.1 162 LRAARSGARVLVGDPGRAFLPRERFRELaGY 192
                      ***99*******9999998888888776344 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   8.6e-05      0.17      99     150 ..      73     123 ..      64     171 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.6e-05
                 -TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-T CS
      Met_10  99 eegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkve 150
                   g +V+d+  G G  ai++a+ + a  v a +++ ++v  +  n + N v 
  KIR65770.1  73 VAGRRVLDLASGSGLVAIAAAR-AGAAAVRAAEVDERAVAAVALNAEANGVR 123
                 56899****************9.67777***********9999999999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1589.40
//
Query:       KIR65771.1  [L=386]
Description: alkane 1-monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-31  108.6  25.8    7.6e-30  104.6  11.6    2.9  3  FA_desaturase  Fatty acid desaturase
  ------ inclusion threshold ------
      0.013   15.8   3.3        0.4   11.1   0.5    2.6  2  CPBP           CPBP intramembrane metalloprotease


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   3.8   3.6e-05      0.32     130     215 ..      13      97 ..       3     105 .. 0.67
   2 !  104.6  11.6   8.4e-34   7.6e-30       8     249 ..     122     341 ..     115     346 .. 0.85
   3 ?    0.7   0.0     0.042   3.7e+02     164     202 ..     340     380 ..     328     385 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.6e-05
  FA_desaturase 130 srrrk.wrllawlllllawlglwlalllllglall..lwlvplllllfllalvlnyveHyggdwgerqvetsasirsaswllnlltgnl 215
                     +r + + l+ ++ll++  ++ ++ +l++ g a++  +wl+p+++++++ ++   +v     + +e  v   a+   + ++l++l+++ 
     KIR65771.1  13 AWRDPrRPLWPLALLVP--ALPFASWLAWRGGAGSwaWWLAPVVVFGVIPVVD-LLVGDDRRNPPEEAVPRLARDG-YYRWLTYLYLPA 97 
                    44443456666666676..9999999999999999989999988888765543.6666655444444444444444.777777777665 PP

  == domain 2  score: 104.6 bits;  conditional E-value: 8.4e-34
  FA_desaturase   8 lalllglfllgitgslaHeaaHgalfkkrklnrwlndllgallglplgisysawrisH.lrHHaytngpdeDpdlaplalsrfeglfryllrlllg 102
                    l+ +l+++  gi+++ aHe++H    k++kl rwl+++       ++ ++y +++ +H ++HH ++++p +Dp +     + +e+++++++r + g
     KIR65771.1 122 LVATLAVV-DGIAINTAHELGH----KREKLERWLSKVA------LAPTGYGHFHVEHnRGHHVRVATP-ADPASS----RLGESFYAFWPRTVAG 201
                    33778888.78877********....899******9999......444679**************7777.*****9....**************** PP

  FA_desaturase 103 llvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllfllalvlnyveHyg......gdwge 192
                    +l+ +w+l       + r+++r+++++++r   +l+aw++ l+  l+++la+++ + ++  + l++++++++ll +v ny+eHyg         ++
     KIR65771.1 202 SLRSAWRL------EAGRFRARGRSPWTYRN-EILTAWAMTLV--LFAALAAAYGPQVLP-FLLLQAVFGFSLLEVV-NYLEHYGlarrrnPAGRY 286
                    ******99......99***********9986.99999999998..444444444333332.9999999999999999.************999999 PP

  FA_desaturase 193 rqvetsasirsaswllnlltgnlnyHieHHlfPgvpwyrLpelhrrlrellpehglp 249
                      v  ++s++s+ ++ n +++ l++H++HH+ P  +++ L+       ++lp+ +++
     KIR65771.1 287 EKVDARHSWNSDRTVTNVFLFQLQRHSDHHANPLRRYQTLRSFD--CSPQLPAGYAT 341
                    999999999999**************************999877..67777766665 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.042
  FA_desaturase 164 lwlvplllllfllalvl..nyveHyggdwgerqvetsasir 202
                    + +v+++l+ +++++v+   ++ Hyggd ++ +v++ a++r
     KIR65771.1 340 ATMVVAALVPPVWRRVMdhRVLAHYGGDLELANVHPPARAR 380
                    45566666666666666888899999888888888877766 PP

>> CPBP  CPBP intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1    0.0042        38      30      79 ..      36     114 ..      17     126 .. 0.64
   2 ?   11.1   0.5   4.5e-05       0.4      37      73 ..     223     264 ..     150     271 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0042
                 HHHHH...S-HHHHHHHHHHHHHCSGGG............HHHH.................HHHHHHHHHHHHHHHHTT-H CS
        CPBP  30 llqer..gsstlailissilFglaHlpn............gpsv.................llaalaGlvlgylylktgsl 79 
                 +l++r   +s++ +l+  ++Fg++ ++                                  l+a  aGlvlg + + +g l
  KIR65771.1  36 WLAWRggAGSWAWWLAPVVVFGVIPVVDllvgddrrnppeE--AvprlardgyyrwltylyLPAQYAGLVLGCAVWASGGL 114
                 44455331224666666678888877775555555554440..05555555555555555599999999999999999866 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 4.5e-05
                 -.....HHHHHHHHHHHHHCSGGGHHHHHHHHHHHHHHHHHH CS
        CPBP  37 s.....tlailissilFglaHlpngpsvllaalaGlvlgyly 73 
                       ++a++++ +lF+++ +++gp+vl+ +l+  v+g+  
  KIR65771.1 223 TyrneiLTAWAMTLVLFAALAAAYGPQVLPFLLLQAVFGFSL 264
                 25555799********************99999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2955.06
//
Query:       KIR65772.1  [L=223]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-22   79.3   3.8    2.4e-22   79.3   3.8    2.4  2  TetR_C_6   BetI-type transcriptional repressor, C-terminal
    5.9e-13   48.4   0.2    5.9e-13   48.4   0.2    1.6  2  TetR_N     Bacterial regulatory proteins, tetR family
    7.8e-05   22.7   0.0    0.00019   21.5   0.0    1.6  1  TetR_C_27  Tetracyclin repressor-like, C-terminal domain
     0.0049   17.1   0.4       0.01   16.1   0.0    1.8  2  TetR_C_24  Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
       0.04   14.0   1.1       0.14   12.2   0.1    2.3  2  TetR_C_7   AefR-like transcriptional repressor, C-terminal do


Domain annotation for each model (and alignments):
>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   1.4      0.23   8.3e+02      45      83 ..       9      45 ..       2      46 .. 0.61
   2 !   79.3   3.8   6.8e-26   2.4e-22       4     114 ..      84     192 ..      81     193 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.23
                HHHHHHHHHHHHHHHHHHHTTSCTTSTHHHHHHHHHHHH CS
    TetR_C_6 45 enyarlrsnlrallaelaegglradadaeaaAerlaAli 83
                +++a lr+ +  + +++++    + ad+++aA   +Al+
  KIR65772.1  9 RLDALLRTACDVIAERGLA--NTRTADVAQAAGVSQALV 45
                3445555555555556666..677888888887777775 PP

  == domain 2  score: 79.3 bits;  conditional E-value: 6.8e-26
                 HHHHHHHCCSTHSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSTHHHHHHHHHHHHHHHHHHHHHTCTTCHHHHH CS
    TetR_C_6   4 rlraileallpldqerraelavwlafwaeaardpelaelqrenyarlrsnlrallaelaegglradadaeaaAerlaAlidGLwlraalapeeldaera 102
                 +lr++l+ + p    r++ +++w++ w+e++r pel ++ r+++ r+r+ l+a++a+++++g++++ad++ aA+r++A++dGL+++ a++++++++++ 
  KIR65772.1  84 KLRRMLKLYAP--TGRPTSWSMWIDGWSESLRVPELEKVSRRLDLRWREDLAAVIADGVREGVFECADPAGAAWRINAMMDGLAVQFAVHDRVISRRQF 180
                 68999999999..677778******************************************************************************** PP

                 HHHHHHHHHHHT CS
    TetR_C_6 103 ralvrrhldall 114
                  +++r   +++l
  KIR65772.1 181 AEWIRLAAAREL 192
                 **9998887776 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.2   1.6e-16   5.9e-13       1      46 [.      13      58 ..      13      59 .. 0.96
   2 ?   -3.9   0.3       3.4   1.2e+04       2       8 ..     186     192 ..     186     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 1.6e-16
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLlea 46
                +l +A  ++aerG ++t ++++A++AGvs+++++++F++Ke Ll +
  KIR65772.1 13 LLRTACDVIAERGLANTRTADVAQAAGVSQALVFYHFATKERLLSQ 58
                699****************************************965 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.4
                 HHHHHHH CS
      TetR_N   2 ldaArel 8  
                 l+aArel
  KIR65772.1 186 LAAAREL 192
                 7899987 PP

>> TetR_C_27  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   5.2e-08   0.00019      49      82 ..     129     162 ..     116     175 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5.2e-08
                 HHHHHHHHHHHHHCT-STT--HHHHHHHHHHHSG CS
   TetR_C_27  49 eeqlaeIireGvaaGeFkaadpeaaaravfdata 82 
                 +e la +i++Gv++G F++adp+ aa  +++++ 
  KIR65772.1 129 REDLAAVIADGVREGVFECADPAGAAWRINAMMD 162
                 6789***********************9999976 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.6   9.5e+03       7      22 ..       9      24 ..       4      38 .. 0.65
   2 !   16.1   0.0   2.9e-06      0.01      40      87 ..     117     164 ..      78     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.6
                HHHHHHHHHHHHHHHT CS
   TetR_C_24  7 rLralvrahveviaee 22
                rL al+r+  +viae+
  KIR65772.1  9 RLDALLRTACDVIAER 24
                5666666666666554 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.9e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHTTSB-SS-HHHHHHHHHHHHHCH CS
   TetR_C_24  40 hreeiralrreyerllrdlieeGvaagefedldpklaalailgmlnwv 87 
                   +  r+l  + ++ l+++i++Gv++g+fe++dp+ aa  i  m+ ++
  KIR65772.1 117 LEKVSRRLDLRWREDLAAVIADGVREGVFECADPAGAAWRINAMMDGL 164
                 4455566777889999***********************999999765 PP

>> TetR_C_7  AefR-like transcriptional repressor, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2      0.25   8.9e+02      68     109 ..      32      78 ..       9      84 .. 0.59
   2 ?   12.2   0.1     4e-05      0.14      28      84 ..     109     164 ..      97     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.25
                 S-HHHHHHHHHHHH.....HHHHTHHHHHH------HHHHHHHHHHH CS
    TetR_C_7  68 dDpelAAeqflgll.....kgelfwprlfgveeppseeeiervvesa 109
                 +D+++AA    +l+     ++e +  + f+ + + + +++++vv+sa
  KIR65772.1  32 ADVAQAAGVSQALVfyhfaTKERLLSQAFAYAVEQDLARLDAVVRSA 78 
                 45555555444444100003333344445555566666666666666 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4e-05
                 HHHHT-HHHHCCHHHT.T----HHHHHHHHHHHHTTSB-SS-HHHHHHHHHHHHHHH CS
    TetR_C_7  28 aeaerfPelarafyeagpgrveealaayLeaavaaGrLridDpelAAeqflgllkge 84 
                 +e+ r Pel +   +    r +e+laa++++ v++G  +++Dp+ AA    +++ g 
  KIR65772.1 109 SESLRVPELEKVSRRL-DLRWREDLAAVIADGVREGVFECADPAGAAWRINAMMDGL 164
                 7888999997776665.9*****************************9888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1726.80
//
Query:       KIR65773.1  [L=79]
Description: hypothetical protein TK50_10605 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0075   15.7   0.8     0.0077   15.7   0.8    1.0  1  SfLAP            Sap, sulfolipid-1-addressing protein
  ------ inclusion threshold ------
       0.74   10.3   4.4        1.1    9.8   4.4    1.3  1  DUF202           Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> SfLAP  Sap, sulfolipid-1-addressing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.8   8.6e-07    0.0077      37      91 ..       4      58 ..       2      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.6e-07
       SfLAP 37 gwlvvlvalglivlfvlrsllsgasaapssaikalqivlGvlllllaaveavrr...p 91
                g+ ++l+a+g+i+ f++++++ g+      +++++  + G+l l++  +++ rr    
  KIR65773.1  4 GTSIFLIAVGAILTFAMDATVGGV---DLDVVGWILMAAGALGLVMTTLVWGRRrevV 58
                788999***************999...567***********************95542 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.4   0.00012       1.1      16      65 ..       5      54 ..       3      60 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00012
      DUF202 16 tslalialglallrffltgepsalg.kilglilivlgiltllvglvrylrr 65
                ts+ lia+g+ l+ f  +  +  +   ++g+il+++g+l l++ +  + rr
  KIR65773.1  5 TSIFLIAVGAILT-FAMDATVGGVDlDVVGWILMAAGALGLVMTTLVWGRR 54
                9999****99988.6555555555457888888777777777766655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.57
# Mc/sec: 414.79
//
Query:       KIR65774.1  [L=1096]
Description: hypothetical protein TK50_10630 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-29  102.9   0.0    4.5e-28   98.5   0.0    2.4  2  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    2.6e-28   99.4   0.1    4.4e-28   98.6   0.1    1.4  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    1.2e-15   57.3   1.1    8.8e-15   54.6   0.1    2.8  3  Fn3-like         Fibronectin type III-like domain
    5.2e-08   32.7   8.6      1e-06   28.5   0.8    3.2  2  Big_2            Bacterial Ig-like domain (group 2)


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.039   1.7e+02      84     115 ..      94     125 ..      85     136 .. 0.89
   2 !   98.5   0.0     1e-31   4.5e-28     122     315 ..     151     402 ..     147     406 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.039
                    SS---S-HHHHHHHT-HHHHHHHHHHHHHHHH CS
  Glyco_hydro_3  84 egtlfPsalalaatssldlikelgriiakelr 115
                    + t  P+++++a+t+++   +e++  ia e+r
     KIR65774.1  94 NYTQYPQSTSIASTWNPGITREIAGGIADEAR 125
                    3499********************99999987 PP

  == domain 2  score: 98.5 bits;  conditional E-value: 1e-31
                    E---B-----STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHT................T-EEEEEEETTGTT-SSETTTSEEB----HHHHHHTTH CS
  Glyco_hydro_3 122 dfaPvvdvnrdprngigvrsFsedpelvaalaaamvkGlqga................gvaatvKHFpghGdgavdshkelptvdhseeelrevdl 201
                     ++P  ++nrdpr+g++++s+ edp+l++++a+a+v+Glqg                 + +at KH+ +   +++++++++ t++++e+ ++e  l
     KIR65774.1 151 YWSPNQNLNRDPRWGRADESYTEDPFLAGQVAGAFVTGLQGDtasrpdtvptgaadyiQAVATPKHYLA---NNSEANRDFGTSNITERSMHEYFL 243
                    59********************************************************999********...5*********************** PP

                    HHHHHHH.HTT-SEEEE---B-TTT---............................BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS-.. CS
  Glyco_hydro_3 202 vpfqaai.eagvdsVMtaHvqfpaldgt............................patgskklltdvLRkelGFdGvvvsDalamkeiadrgg.. 266
                     pf a   eag++s M+a   f+ +++                             pa++s++++ ++LR   GFdG+vvsD  a+  +   g+  
     KIR65774.1 244 PPFAASAgEAGARSLMAAYNAFSVVEDYttdypsassyptlwsprdnvtpggtpgtPAAASRYAIETMLRRSYGFDGFVVSDCDAITRVHGTGTsg 339
                    ******************99999999989******************************************************9999998888888 PP

                    ...............HHHHHHHHHHHT-SBEES-S---SGHHHHHHHHHTTSS-HHHHHHHHHH CS
  Glyco_hydro_3 267 ...............keeavvlaLkAGvDilLvpeertseikalkkavkeGeltearidesvrr 315
                                   k    + aLkAG+D+     ++  +  +l +a ++G ++ea +d ++ r
     KIR65774.1 340 hswqpvqlggqtqisKTLGNAWALKAGTDLDCSGGDYP-TASGLPAAQSQGFVSEADVDIALVR 402
                    899999999987776666677899*****999888884.6899999999999999999999888 PP

>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   0.1   9.8e-32   4.4e-28       2     204 .]     456     742 ..     455     742 .. 0.84

  Alignments for each domain:
  == domain 1  score: 98.6 bits;  conditional E-value: 9.8e-32
                      EEEEEGSS--S-..S-STEEEEEESGGGSSS-SS-BSSS----S---HHHHHHHHHHH.................................... CS
                      xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................... RF
  Glyco_hydro_3_C   2 VLLkNennlLPL..kkklkkiaviGpnadetlklGggsgtvtvsylvsplegirerles................................... 58 
                      VLLkN +++LP+  + + k++a+   +  ++ ++G +sg ++v   ++  ++++er++s                                   
       KIR65774.1 456 VLLKNAGGALPFagAASGKTVALGHVDTLNNFQSGSYSGPTAV--DTTFAQALAERTGSapsavtagsttpflsshlavfpdvldangtaitts 547
                      9***********9877777888766555589********9877..7799********99*********************************** PP

                      ..........-HHHHHHHHHHHTSEEEEEEEES...SB-TTSCSGHHSSTTHHHHHHHHH.....HTTSSEEEEEEESSGG--TTT.GTTTEEE CS
                      .........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
  Glyco_hydro_3_C  59 .........eegideaveaakeaDvavvvvgedpeiegEgvDrtdlalpeaqdelikava.....aanknvvvvlqsggpvavepw.keenvkA 137
                                ++ + a+ + ++aD +vvvvg+ ++ +gEg Dr+++ +p  q eli+        + +k++ v +q+ ++v+v+ + + ++v A
       KIR65774.1 548 vcasspcdpVADAATAEYQISQADNVVVVVGHRNNDGGEGTDRSTVVMPRMQAELIRDSIaplaqKYGKKIAVWIQAKTMVDVSAFkDLPSVGA 641
                      *******9977888999999*************999********************987657777889***************9999889**** PP

                      EEE-S--GCCHHHHHHHHHTTSS...........---B--SS-EESSSGGG...................................S-----S. CS
                      xxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxx..xxxxxxxx.....xx.................xxxxxxxx. RF
  Glyco_hydro_3_C 138 ilaawlpGqegGtaiadvLfGdv...........nPsGkLpvtfpksledl..pddyyeek.....dt.................ykfegtpl. 195
                      i+++ ++G  +G+a+a++Lf d+           n+sGkLp+t++ +++    p     ++     ++                 +        
       KIR65774.1 642 IVWSSFNGMYQGKAMAELLFNDAvaledgrtavaNFSGKLPLTWYSDVDAQlgPA--AAPDraiedYRmtraegarcgrtylyyqV------Gp 727
                      **********************************************999442433..22221232211334455556666554332......03 PP

                      ......ETTTT-BCH CS
                      ......xxxxxxxxx RF
  Glyco_hydro_3_C 196 ......YpeGlglsY 204
                            Y +G glsY
       KIR65774.1 728 dcaaphYVFGQGLSY 742
                      334556999999999 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.27   1.2e+03      29      45 ..     757     773 ..     754     775 .. 0.86
   2 !   54.6   0.1     2e-18   8.8e-15       1      71 []     780     852 ..     780     852 .. 0.95
   3 ?   -3.7   0.0       3.1   1.4e+04      38      51 ..     896     909 ..     894     916 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.27
                 E-TT-EEEEEEEEECGG CS
    Fn3-like  29 LapGesktvtftldrkd 45 
                 + p es tv+++++ ++
  KIR65774.1 757 ITPDESVTVSVPVSNRA 773
                 789*********99876 PP

  == domain 2  score: 54.6 bits;  conditional E-value: 2e-18
                 EEEEEEEEESS..-STTSBS-EEEEEEEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEESSS CS
    Fn3-like   1 evvqlYvsdpe..ssverpvkeLkgFekveLapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvgtss 71 
                 +vv +Y+++p+  ++ +rp k+LkgF k  L + ++ktv++t+d+ dl +wd+ k+k v ++G++t+l g ss
  KIR65774.1 780 AVVEVYARAPQgaDGSQRPLKQLKGFVKSGLIAAKTKTVKVTIDAGDLWFWDDVKHKKVFPTGDWTILAGPSS 852
                 59*********44479******************************************************998 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3.1
                 EEEEECGGG-EEET CS
    Fn3-like  38 tftldrkdlsvwde 51 
                 ++++++ d+ +w+ 
  KIR65774.1 896 RLSVTKHDMTFWKL 909
                 68899999999975 PP

>> Big_2  Bacterial Ig-like domain (group 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.8   2.3e-10     1e-06      34      70 ..     914     950 ..     905     959 .. 0.86
   2 !    6.6   1.6    0.0016       7.2      41      70 ..    1023    1052 ..     995    1060 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 2.3e-10
                 --EEEEECC-SSEEEETCCEECCCSSEEEEEEEEETT CS
       Big_2  34 kkvtwtssngsvAtVsatGlVtavaaGkatitatskd 70 
                  kvt+tss++svAtV+a G+V+ v++G++ ita +  
  KIR65774.1 914 LKVTYTSSDPSVATVDARGSVKPVSTGAVLITARATA 950
                 58******************************97766 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0016
                  CC-SSEEEETCCEECCCSSEEEEEEEEETT CS
       Big_2   41 sngsvAtVsatGlVtavaaGkatitatskd 70  
                  +n++ A+V+  G +ta  +G + +t+t+  
  KIR65774.1 1023 TNTAGASVTPAGVLTAARTGHVRVTVTATS 1052
                  588889*******************99977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1096 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.51
# Mc/sec: 6457.68
//
Query:       KIR65775.1  [L=612]
Description: ATP-dependent DNA helicase RecQ [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-35  119.7   0.0    8.7e-35  119.0   0.0    1.4  1  RQC              RQC domain
    7.9e-23   80.2   0.0    1.5e-22   79.3   0.0    1.5  1  HRDC             HRDC domain
    1.5e-18   67.2   0.0    2.8e-15   56.6   0.0    2.4  2  Helicase_C       Helicase conserved C-terminal domain
    7.7e-18   65.0   0.9    1.4e-17   64.1   0.9    1.5  1  RecQ_Zn_bind     RecQ zinc-binding
    1.4e-17   64.1   0.0      2e-17   63.5   0.0    1.3  1  DEAD             DEAD/DEAH box helicase
  ------ inclusion threshold ------
       0.17   11.5   0.4        0.5   10.0   0.3    1.8  2  Glycos_transf_N  3-Deoxy-D-manno-octulosonic-acid transferase


Domain annotation for each model (and alignments):
>> RQC  RQC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0   0.0   2.9e-38   8.7e-35       1     111 [.     406     519 ..     406     522 .. 0.96

  Alignments for each domain:
  == domain 1  score: 119.0 bits;  conditional E-value: 2.9e-38
                 ---EEE-HHHHHHHHHHHHHT....TS-SBHHHHHHHHHT---CCCCCTTGGGSTTTTTTTTS-HHHHHHHHHHHHHTTSEEEE..SSSBEEE-CCGHH CS
         RQC   1 ppetvDvteeaqkilscvyrt....gqrfgaghivdvLrGsktkkirqlghdklstfGigkdlskkewrrlirqLiaegyLeedveeygvlkltekare 95 
                 ppe++D+t +aqk+ls+v r+    +q+fgag+++d+L G +t+k+ q++hd+ls+fGig++ls+ ewr ++rqL+a+g+L+++++ yg+l lt++++e
  KIR65775.1 406 PPESWDGTIAAQKLLSTVLRLhrerNQKFGAGQCIDILLGRRTEKVVQHRHDTLSVFGIGEELSEAEWRGVVRQLLAQGLLAVEGD-YGTLVLTDASAE 503
                 79*******************98877**********************************************************88.************ PP

                 HHTSSS--EEESHHHX CS
         RQC  96 vlkgeekvklreekkk 111
                 vl ++++v +r+e+ +
  KIR65775.1 504 VLGRRRQVPMRRETVR 519
                 ***********99876 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.0   5.2e-26   1.5e-22       3      68 .]     545     610 ..     543     610 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 5.2e-26
                 HHHHHHHHHHHHHHHHHTS-HHHHS-HHHHHHHHHH---SHHHHHTSTTT-HHHHHHHHHHHHHHH CS
        HRDC   3 allkaLrewReelAreedvppyvvfpdktLleiAeklPttleeLlqiegvgkrklekygeeileai 68 
                  ++++Lr+wR ++A+e++vp+yvvf+d+tL++iA+  P tl+eL++++gvg++kl +yge +l+a+
  KIR65775.1 545 PVFERLRAWRAATAKEQGVPAYVVFHDATLRQIAADPPSTLDELARVNGVGEAKLARYGEHLLAAL 610
                 58*************************************************************985 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0     0.001       3.1      13      79 ..      61     128 ..      52     135 .. 0.77
   2 !   56.6   0.0   9.2e-19   2.8e-15       4     110 ..     224     330 ..     221     331 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.001
                 TTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEE.EESGGGTSS CS
  Helicase_C  13 eeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvL.iatdvaerG 79 
                  +++g ++++++ i  +++ v+ l +  g ++  l+++l  + r+ + +qf +ge d+L +a  +++ G
  KIR65775.1  61 LVRDGVAVVVSPLIALMQDqVDAL-TAVGARAGFLNSTLDPDARRLVEAQFLAGELDLLyLAPEALGSG 128
                 467788899999999554436777.3449****************************774666666655 PP

  == domain 2  score: 56.6 bits;  conditional E-value: 9.2e-19
                 HHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHH CS
  Helicase_C   4 eallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiq 102
                 ++ll+l+  e+ g+  ++++ ++ +++k+  +l  +g+ ++++h+ l +  r    ++f +++  v++at + ++Gid p+v++V ++dlpr+v+ y q
  KIR65775.1 224 KQLLDLIRAEHPGDAGIVYCLSRASVDKTAEFLVANGVAALPYHAGLDAATRATNQKRFLREDGLVMVATIAFGMGIDKPDVRFVAHLDLPRSVEGYYQ 322
                 5688898999999***************88888999***********************999999********************************** PP

                 HHTTSSST CS
  Helicase_C 103 riGRtgRa 110
                   GR+gR 
  KIR65775.1 323 ETGRAGRD 330
                 *******6 PP

>> RecQ_Zn_bind  RecQ zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.9   4.8e-21   1.4e-17       2      66 .]     343     404 ..     342     404 .. 0.91

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 4.8e-21
  RecQ_Zn_bind   2 qDvsrlrrlieqseesekekeaelekleamlaycentteCrrkllleyFgeeaaeeeCgnCDnCl 66 
                   qDv+++r++i++se++++++++   +l+amla+ce+ +eCrr+ ll+yFg+  +   CgnCD Cl
    KIR65775.1 343 QDVVQQRKMIDSSEGDAAHRRVLAAHLDAMLALCET-VECRRVRLLSYFGQ-DSG-PCGNCDTCL 404
                   9*********************************55.55***********8.355.5*******6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.0   6.8e-21     2e-17       4     172 ..      29     187 ..      26     191 .. 0.86

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 6.8e-21
                 HHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
        DEAD   4 QaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vdiv 101
                 Q+e+i++++gggd lv ++TG GK+l+++ip+l  v      +   a++v+P+ +L++++++ l+ ++  ++  +++++  +a+r   +++ +g +d++
  KIR65775.1  29 QQEIIDHVVGGGDALVLMPTGGGKSLCYQIPAL--V------RDGVAVVVSPLIALMQDQVDALTAVGARAG-FLNSTLDPDARRLVEAQFLAGeLDLL 118
                 9********************************..3......4569***********************988.4445677777765555544555**** PP

                 EEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD 102 vgtpgrlddllstgklnlsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSATlp.kd 172
                 +  p+ l +  + + l+  ++ ++ +DEa+++ ++  +f++++ + l+ l++   d +     i+l+AT++ ++
  KIR65775.1 119 YLAPEALGSGGTLRLLDRGRIALFAIDEAHCVAQWghDFRPDYLA-LSMLHERWPDVP----RIALTATATaET 187
                 ********977778889999***************999****999.899988888888....999999998555 PP

>> Glycos_transf_N  3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.19   5.6e+02      70     103 ..     139     173 ..     131     176 .. 0.84
   2 ?   10.0   0.3   0.00017       0.5      37      91 ..     170     223 ..     160     233 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.19
  Glycos_transf_N  70 hvylPlDlpaavrrfldavkPdl.lilvetElWpn 103
                      + ++ +D + +v+++   ++Pd  ++ +  E Wp 
       KIR65775.1 139 IALFAIDEAHCVAQWGHDFRPDYlALSMLHERWPD 173
                      458899****************7477899999996 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00017
  Glycos_transf_N  37 alrerkpelkillTttTptGaevakkllaervdhvylPlDlpaavrrfldavkPd 91 
                      ++  + p++ ++ T t +t++e+a++l   ++ h+++ +D p +  r++ + +P+
       KIR65775.1 170 RW-PDVPRIALTATATAETAREIATRLDLTAARHFVASFDRPNIQYRIVAKREPR 223
                      22.334677778889999****9999999*******************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4230.32
//
Query:       KIR65776.1  [L=196]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-08   34.2   0.3    3.5e-08   33.1   0.3    1.6  1  TetR_N     Bacterial regulatory proteins, tetR family
    0.00048   20.4   6.8    0.00048   20.4   6.8    2.3  2  TetR_C_11  Tetracyclin repressor-like, C-terminal domain
     0.0033   17.6   1.1     0.0059   16.7   0.0    2.0  2  TetR_C_21  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.3   5.8e-12   3.5e-08       1      47 []      21      66 ..      21      66 .. 0.96

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 5.8e-12
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                Il++A++  a +G   +++++IA+ AGv+ +++ r+Fp++++Llea+
  KIR65776.1 21 ILAVAEQEVAAHGGG-ASLEQIARTAGVGSATVRRHFPTRRALLEAV 66
                899**********88.88***************************97 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   5.6     0.062   3.7e+02      44      98 ..      58     107 ..       8     114 .. 0.65
   2 !   20.4   6.8     8e-08   0.00048       2     109 ..      82     181 ..      81     185 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.062
   TetR_C_11  44 laealrerlleprraalravlrrAvarGelradadvelvldlllgpllyrllltg 98 
                 +++al e++  +r ++l a+ r  ++rG+ r      ++ld l +++ y +  +g
  KIR65776.1  58 TRRALLEAVSSRRIDTLSARARDLADRGDSRD-----ALLDWLSDVVTYCVTARG 107
                 45555555666666666666666666666663.....555555555555554444 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 8e-08
   TetR_C_11   2 pDtGslrgDLrallralaealaspragallrallaeaqrdpelaealrerlleprraalravlrrAvarGelradadvelvldlllgpllyrllltgep 100
                  D G+ r+ L+ +l ++++ + +   g + +   +++  dp   +     + +  ++a++ +lrrA++ G +++d+ ++ +++l++g+ l    +++ p
  KIR65776.1  82 ADRGDSRDALLDWLSDVVTYCVTA-RGLAATLAYGDVPPDPVHGNT----CAAAIQEAADPLLRRAAQDGAVAPDVTAADLIALVVGIAL---GTEHHP 172
                 699****************99994.555555556888888844444....5568899******************************984...466667 PP

   TetR_C_11 101 lddafaerl 109
                  ++a+a+rl
  KIR65776.1 173 DPAARADRL 181
                 777777766 PP

>> TetR_C_21  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3         1     6e+03      93     105 ..       7      19 ..       3      32 .. 0.54
   2 !   16.7   0.0   9.8e-07    0.0059      52      89 ..     139     176 ..     118     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1
   TetR_C_21  93 adaeerarrraav 105
                 ad++++++rr+ +
  KIR65776.1   7 ADRQRADARRNYA 19 
                 4444444444433 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 9.8e-07
   TetR_C_21  52 iraaQraGtvdaswkpedlltlvlalasawaaaparaa 89 
                 +r+a ++G v ++++++dl++lv+++a    ++p+ aa
  KIR65776.1 139 LRRAAQDGAVAPDVTAADLIALVVGIALGTEHHPDPAA 176
                 688889************************99999332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1386.68
//
Query:       KIR65777.1  [L=307]
Description: NmrA family protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-46  156.9   0.0    8.7e-46  156.3   0.0    1.2  1  NmrA            NmrA-like family
    5.6e-24   85.0   0.5    7.5e-24   84.6   0.5    1.3  1  NAD_binding_10  NAD(P)H-binding
    6.2e-09   35.7   0.0    1.1e-08   34.9   0.0    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
    1.7e-05   24.0   0.0    2.2e-05   23.6   0.0    1.1  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
    0.00068   19.1   0.0    0.00097   18.6   0.0    1.2  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
       0.01   15.3   0.3      0.016   14.7   0.3    1.3  1  adh_short       short chain dehydrogenase


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.3   0.0   2.9e-49   8.7e-46       1     228 [.       8     247 ..       8     270 .. 0.92

  Alignments for each domain:
  == domain 1  score: 156.3 bits;  conditional E-value: 2.9e-49
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG........S-HHHHHHHHHHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy........skeiedgkklvdAake 91 
                 +lv+GaTGrqG++ vral +ag +vralvRd+++++a+++++ Gvelv gdl d++s+ +a +g+ +vfsv              e+ +g++lv+ a +
  KIR65777.1   8 VLVTGATGRQGGATVRALRAAGVPVRALVRDPHTDRATAVEALGVELVTGDLRDRDSVTRAAQGARAVFSVQMPDmstgvpdfAGEVVQGVNLVEGARA 106
                 79********************************************************************998778899999999************** PP

                 HS-SEEEEEE---GG.GT.S......SS.---TTTHHHHHHHHHHHHCTS-E.EEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-H CS
        NmrA  92 aGvkhfiySslgddndrsna......ee.pavphfdsKaeieeyvralgipy.tfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavllda 182
                 aGv++f+  s++ + ++++a      ++    p+  +K ei++ vr++g+p+ t + +gffmenfl+++a l++   a +   v +l+p+     l+ a
  KIR65777.1 107 AGVPQFVHTSVTGAGQHTEApgwaegRWaMMEPVLGAKSEIQDRVREAGFPHwTLLKPGFFMENFLPSMAYLFPRGIAGGL--VSVLRPET-RLSLV-A 201
                 ************9999987621111133134688999**************77******************9999988886..99999998.56666.9 PP

                 HHHHHHHHHHHHHHHHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS- CS
        NmrA 183 eeDiGafvikilkdprklkgkriklagntlsgneivelfekkigkt 228
                 ++DiG++ ++++ dp+ + g+ ++la++ ls++ei++ +++++g +
  KIR65777.1 202 VDDIGRAAAAAIADPERFDGVELELASDHLSMTEIAQTLSRVLGTP 247
                 ******************************************9976 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.5   2.5e-27   7.5e-24       1     149 [.      12     170 ..      12     216 .. 0.80

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 2.5e-27
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTH..HHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC......HHHH....HHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnp..eklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggk......deeg....aknivd 83 
                     GAtG+ G + v+ l a+ g++v+alvR+p  ++++++e + g+e+v+gd+ d +++++a +ga aV+s   ++ +         g     +n+v+
      KIR65777.1  12 GATGRQGGATVRALRAA-GVPVRALVRDPhtDRATAVE-ALGVELVTGDLRDRDSVTRAAQGARAVFSVQMPDMStgvpdfA--GevvqGVNLVE 102
                     9****************.5*********7437889887.79*****************************766655545441..255679***** PP

                     HHHHCT--EEEEEEETTTTS..GCGCH.HHHHHHHCCHHHHHHHHHHHHHHHHSSSE.EEEEEE-CEE-S CS
  NAD_binding_10  84 aakeagvkRfvlvsaigvgd..evpge.fgewnkellkaylaakraaeellrasgld.wTivrpggLtde 149
                      a++agv +fv  s  g+g+  e+pg   g+w   +++++l ak +  + +r+ g+  wT ++pg+++++
      KIR65777.1 103 GARAAGVPQFVHTSVTGAGQhtEAPGWaEGRW--AMMEPVLGAKSEIQDRVREAGFPhWTLLKPGFFMEN 170
                     ******************97222333212233..79******************9988********9886 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   3.6e-12   1.1e-08       1     114 [.       8     116 ..       8     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 3.6e-12
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtln 97 
                 +lVtGatG  G a+v+al ++g+ v +l r++++++  + e l  elv++dl+dr++++r+ +  ++ av+ +      ++ s+   df+   ++  +n
  KIR65777.1   8 VLVTGATGRQGGATVRALRAAGVPVRALVRDPHTDRATAVEALgvELVTGDLRDRDSVTRAAQ--GARAVFSV----QMPDMSTGVPDFAG-EVVQGVN 99 
                 79*****************************88888888777799****************99..9******9....66666666666666.666678* PP

                 HHHHHHHHTCTEEEEEE CS
   Epimerase  98 lleaarkagvkrllfls 114
                 l+e ar+agv ++++ s
  KIR65777.1 100 LVEGARAAGVPQFVHTS 116
                 ***************98 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   7.4e-09   2.2e-05       1     117 [.       9     118 ..       9     126 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 7.4e-09
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrnv 99 
                 +vtG++G  G a v++L  ++    vr+l  + ++     ++ ++v+ +++gD++d d++++a +g+ +v+ +    +++g    d   +  v+G  n+
  KIR65777.1   9 LVTGATGRQGGATVRALRAAG--VPVRALVRDPHTDRATAVEALGVE-LVTGDLRDRDSVTRAAQGARAVFSVQMPDMSTG--VPDFAGE-VVQGV-NL 100
                 69**************99999..477777666666666689999999.*************************87777777..4553344.58885.89 PP

   3Beta_HSD 100 leacvkagvrvlvYtSsa 117
                 +e ++ agv+ +v+tS  
  KIR65777.1 101 VEGARAAGVPQFVHTSVT 118
                 9**************976 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.2e-07   0.00097       1      72 [.       9      70 ..       9      78 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.2e-07
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHH CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerlla 72
                   L+TG +G  G  +++ L + g  v  +vr+  + +++ +e+l           ++l+ gDl+D++s++r+ +
     KIR65777.1  9 LVTGATGRQGGATVRALRAAGVPVRALVRDPHTDRATAVEALG----------VELVTGDLRDRDSVTRAAQ 70
                   9*******************************99999999986..........579************9876 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.3   5.4e-06     0.016       3      73 ..       8      74 ..       6      80 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.4e-06
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHH.HHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrsee.kleevakelkeegakalaiqvDvtdreevealvekavk 73
                vlvtGa++  G a++++l ++G+ v ++ r +  + +++++ l+     +  +++D++dr++v ++ + a++
  KIR65777.1  8 VLVTGATGRQGGATVRALRAAGVPVRALVRDPHtDRATAVEALG-----VELVTGDLRDRDSVTRAAQGARA 74
                89************************966665504445555555.....89***************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2117.55
//
Query:       KIR65778.1  [L=332]
Description: reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-06   26.1   0.0     0.0018   17.8   0.0    2.1  1  Epimerase  NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     1e-07    0.0018       2     220 ..       4     196 ..       3     212 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1e-07
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnlle 100
                 lV+G+tGf+G a+v +  ++g+ v++++r               v + l  ++  ++l    + da   lAa ++ ++      d+++   + +++ + 
  KIR65778.1   4 LVLGGTGFVGGATVAEAVRRGWSVTVFNRG--------------VSGALPAGV--HQLRG--DRDAPGGLAALADGEWDL--VVDTWDGAPRAVRDAAR 82 
                 9****************************9..............333333322..23222..234444444444444432..23555555555555555 PP

                 HHHHHTCTEEEEEEEGGGGTSCSS..SS.BSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHHTT CS
   Epimerase 101 aarkagvkrllflsSsevYGkdae..qp.keettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirkileg 196
                 a+r++    + ++sS +vY ++ +  +  +  t+  +p +    Ya  K+ ge+ + a+   +g +a+  r   + Gp+    e+ + +p ++ ++++g
  KIR65778.1  83 ALRDRAG-WFGYVSSGSVYTRPVPagVGeDAPTVAAEPDAVDGSYAQFKAGGERAAAAV---FGDRALLARAGLILGPG----EDIGRLPWWLHRVARG 173
                 6665544.688888888887766643212445555556688888888888888877765...67778888888888888....7777788888888888 PP

                 SSSEEEETTST-EEEEEEHHHHHH CS
   Epimerase 197 kqevtllgdgtalRdflyveDvae 220
                   +v+  g  +   ++++v+D+a 
  KIR65778.1 174 G-DVLAPGPVDLPLQYVDVRDLAA 196
                 8.8888888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2324.18
//
Query:       KIR65779.1  [L=115]
Description: hypothetical protein TK50_10665 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.33s 00:00:00.88 Elapsed: 00:00:00.55
# Mc/sec: 633.92
//
Query:       KIR65780.1  [L=165]
Description: hypothetical protein TK50_10670 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-44  149.9   1.4    7.9e-44  149.7   1.4    1.0  1  DUF664    Protein of unknown function (DUF664)
      3e-12   47.2   1.6    4.2e-12   46.7   1.6    1.1  1  DinB_2    DinB superfamily


Domain annotation for each model (and alignments):
>> DUF664  Protein of unknown function (DUF664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   1.4   8.8e-48   7.9e-44       2     148 ..      21     162 ..      20     164 .. 0.96

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 8.8e-48
                 HHHHHHHHHHHHHHHHTT--GGGTT--BTTB-S-HHHHHHHHHHHHHHHHHHHTT-S---TTTSHHTTTSSS---SS---HHHHHHHHHHHHHHHHHHH CS
      DUF664   2 LeafLdrqretllakleGLsdeqarrravpsstsllgLvkHvaevErgwfrrvlggeeevpldrsaadpdadfelaedetladllaeyrravaradavv 100
                 +eaf+d++r +l+++l+GL++eqarr++vps t+llgLvkH++ vEr+wf+++++ +++v+l    a ++++f l +++t+a++ +++r+a+++a+++ 
  KIR65780.1  21 FEAFIDEHRSALNHCLDGLTEEQARRTLVPSRTTLLGLVKHATFVERVWFDEAITCRPRVELGLP-AASEDSFLLDDGDTIASVQQAHREACEAARRAT 118
                 689**********************************************************9998.999****************************** PP

                 TT--HHHHTSB-T-......SBHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      DUF664 101 aaeldldetvrvpkapwgeevslrwvlvhlieetarHaGhadilReli 148
                 +  ldld++ r    +++ ++ lrwv++h+++e+a+H+GhadilRe+i
  KIR65780.1 119 S-SLDLDDVLRG---NRRGPLPLRWVYLHVLRELAQHCGHADILREQI 162
                 *.*********5...67778**************************97 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   1.6   4.7e-16   4.2e-12       2     127 ..      25     154 ..      25     155 .. 0.77

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 4.7e-16
      DinB_2   2 lerararllalledlteeelnrqpspgkwsiawllaHlgnveelllerlr........geeaprpgldpltp.....psaaealaylaevrarllalle 87 
                 ++++r++l + l++ltee+++r  +p ++++  l+ H ++ve++++  +         g       l+ + +      + + ++   ++ r+++ a  +
  KIR65780.1  25 IDEHRSALNHCLDGLTEEQARRTLVPSRTTLLGLVKHATFVERVWFDEAItcrprvelG-------LPAASEdsfllDDGDTIASVQQAHREACEAARR 116
                 589*******************************************6666455544333.......222222333424444444445555666666666 PP

      DinB_2  88 altdadldrpltaphpglgkltlgdvllfvlqHeqhHleq 127
                 a++  dld+ l+ +  ++g+l+l++v+l+vl+++++H ++
  KIR65780.1 117 ATSSLDLDDVLRGN--RRGPLPLRWVYLHVLRELAQHCGH 154
                 6777899999999*..*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1147.09
//
Query:       KIR65781.1  [L=332]
Description: hypothetical protein TK50_10680 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.013   15.3   5.2      0.013   15.3   5.2    2.0  2  TAT_signal  TAT (twin-arginine translocation) pathway signal 


Domain annotation for each model (and alignments):
>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   5.2   7.2e-07     0.013       2      25 ..      14      37 ..      13      38 .. 0.93
   2 ?   -1.9   0.0      0.19   3.5e+03       8      14 ..      48      54 ..      48      55 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.2e-07
  TAT_signal  2 lSRRdFLKgsAAaaAAaalggcaa 25
                lSRR FL g +A aAA+++gg+++
  KIR65781.1 14 LSRRGFLGGVGASAAALTVGGVLG 37
                8********************975 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.19
  TAT_signal  8 LKgsAAa 14
                +K++A++
  KIR65781.1 48 MKWGAVV 54
                79***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2339.60
//
Query:       KIR65782.1  [L=212]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-23   81.1   0.0    9.8e-23   80.5   0.0    1.3  1  Response_reg  Response regulator receiver domain
    7.9e-19   67.0   0.4    1.3e-18   66.3   0.4    1.4  1  GerE          Bacterial regulatory proteins, luxR family
    2.2e-07   30.4   0.5      1e-06   28.3   0.2    2.1  2  Sigma70_r4_2  Sigma-70, region 4
     0.0022   17.5   0.1     0.0056   16.2   0.1    1.7  1  Sigma70_r4    Sigma-70, region 4
     0.0025   17.3   0.0     0.0053   16.3   0.0    1.5  1  HTH_24        Winged helix-turn-helix DNA-binding
     0.0031   17.2   0.0     0.0067   16.2   0.0    1.5  1  HTH_38        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.051   13.4   0.0       0.14   12.0   0.0    1.9  1  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   3.8e-26   9.8e-23       1     112 []       4     116 ..       4     116 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 3.8e-26
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   v++ dD+++vr++l++ll+ + ++e+v+e  +++ea + + + ++d+ +lD ++p+ +G+++++ ir+ d++++ +ilt+++++e + +a+ aga++
    KIR65782.1   4 VFLLDDHEVVRRGLADLLTnSGDIEVVGESGSAQEAARRIPALRPDVAILDARLPDGNGIDVCRDIRAVDSSIKGLILTSYEDDEALFAAIMAGASG 100
                   7899***************77889************************************************************************* PP

                   EEESSG-HHHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkale 112
                   ++ K+++ ++L++a++
    KIR65782.1 101 YVLKQIRGTDLVDAVR 116
                   ************9985 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.4   5.1e-22   1.3e-18       2      57 .]     149     204 ..     148     204 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 5.1e-22
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 +L+++Er +L+++aeG++n eIA +++++ekTVk+++s+++ KL+++ r+++++la
  KIR65782.1 149 TLTEQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSVLAKLGLERRTQAAVLA 204
                 8****************************************************987 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.2   3.9e-10     1e-06       8      54 .]     147     192 ..     144     192 .. 0.93
   2 ?    0.6   0.0      0.18   4.7e+02       8      27 ..     191     210 ..     188     212 .] 0.85

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 3.9e-10
                   HTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   8 laeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   l +L+e++r+i++    egl+ +EIA ++ + e+tVk+++s  ++kL
    KIR65782.1 147 LKTLTEQERRILEY-VAEGLTNREIAGKMFLAEKTVKNYVSSVLAKL 192
                   789***********.79***********************9888887 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.18
                   HTTS-HHHHHHHHHHHTS-- CS
  Sigma70_r4_2   8 laeLperqreifllrylegl 27 
                   +  L  r ++++l  +l g+
    KIR65782.1 191 KLGLERRTQAAVLATRLLGK 210
                   667999*********99996 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   2.2e-06    0.0056       2      48 ..     147     192 ..     147     193 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.2e-06
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 L++L+e+er++le++  eglT  EI+ ++ + + +V+   +  l kL
  KIR65782.1 147 LKTLTEQERRILEYV-AEGLTNREIAGKMFLAEKTVKNYVSSVLAKL 192
                 899*********976.6899*****************9999999998 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.1e-06    0.0053       2      39 ..     151     186 ..     150     189 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.1e-06
      HTH_24   2 detdrkILelLqknprisqreLAerlglSpstvnrrlk 39 
                  e +r+ILe++ +  ++++re+A +  l   tv+ ++ 
  KIR65782.1 151 TEQERRILEYVAE--GLTNREIAGKMFLAEKTVKNYVS 186
                 6899*********..*******************9985 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.6e-06    0.0067       4      32 ..     149     176 ..     147     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.6e-06
      HTH_38   4 hLsleeReeIerllaeGlslreIArrLgr 32 
                  L+ +eR +I    aeGl++reIA ++  
  KIR65782.1 149 TLTEQER-RILEYVAEGLTNREIAGKMFL 176
                 69*****.9***************98755 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.5e-05      0.14       9      40 ..     156     187 ..     149     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.5e-05
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTvyrwlkr 40 
                 ril  +aeGl+ reIA ++   + Tv ++++ 
  KIR65782.1 156 RILEYVAEGLTNREIAGKMFLAEKTVKNYVSS 187
                 58999999********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1481.09
//
Query:       KIR65783.1  [L=584]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-28  100.2  13.2    1.5e-16   60.9   0.1    3.7  4  GAF_2         GAF domain
    2.7e-21   76.6   1.3    4.1e-13   50.1   0.0    3.3  3  GAF           GAF domain
    6.2e-20   71.9   0.5    2.5e-08   34.3   0.3    3.1  2  GAF_3         GAF domain
    2.7e-13   50.2   1.5    2.7e-13   50.2   1.5    3.0  3  HisKA_3       Histidine kinase
    1.4e-08   34.7   1.0    3.8e-07   30.1   0.1    2.5  2  HATPase_c_2   Histidine kinase-like ATPase domain
      1e-06   29.2   0.0    1.7e-05   25.3   0.0    2.6  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
     0.0052   17.1   0.2        0.9   10.0   0.2    3.1  3  H-kinase_dim  Signal transducing histidine kinase, homodimeri


Domain annotation for each model (and alignments):
>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.77     2e+03       4      18 ..      25      39 ..      23      48 .. 0.82
   2 !   60.9   0.1   5.9e-20   1.5e-16       2     138 .]      60     199 ..      59     199 .. 0.85
   3 !   43.9   2.5   1.1e-14   2.7e-11       5     138 .]     231     376 ..     228     376 .. 0.77
   4 ?    0.3   0.0      0.31     8e+02       3      33 ..     497     527 ..     496     581 .. 0.52

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.77
                HHHHHHHHHHHHHHS CS
       GAF_2  4 leelldlvldelvel 18
                l+ell+++ld++ e+
  KIR65783.1 25 LDELLQEMLDRVGEV 39
                89********99884 PP

  == domain 2  score: 60.9 bits;  conditional E-value: 5.9e-20
                 HHHHHHHHHHHHHHHHS.S..EEEEEEE-TTS-EEEE...EEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT--EEEE CS
       GAF_2   2 adleelldlvldelvel.gaalgyillvdddgglrla...awgeaeeefgaaldrplgeglvgealrtgrpvilndleedpdkkglpaghaglrsflav 96 
                 +dl+++l++++ +++el ga +g ++++ +d+   l+   + g + e +    d p g+g++g  + + rpv   d+  +p + g p  h++++sfl+v
  KIR65783.1  60 LDLRSTLQRIVAAACELvGAKYGALGVIGPDRL--LHdfiTHGIDAELHAKIGDLPHGRGVLGLLIDEPRPVRMPDITKHPKSYGFPPHHPPMHSFLGV 156
                 699*************88*********998887..4455444444444444443377****************************************** PP

                 EE-TTS---EEEEES........--HHHHHHHHHHHHHHHHHHH CS
       GAF_2  97 PlisegrvvGvlnlyankppa..fdeedlelLeelaeqiaiaie 138
                 P++ +++v+G l l+ +k++a  f+e+d e++ +la+ +++aie
  KIR65783.1 157 PVRIREQVFGNLYLA-EKQGAaeFTEDDEEIVVALAAAAGVAIE 199
                 **99789******94.4444458********************8 PP

  == domain 3  score: 43.9 bits;  conditional E-value: 1.1e-14
                 HHHHHHHHHHHHHS.S..EEEEEEE-.TTS-EEEE.......EEEES-TTSTT-S-B...--...-TTHHHHHHHHTS-EEES-GGG-S-HHHHHHHHH CS
       GAF_2   5 eelldlvldelvel.gaalgyillvd.ddgglrla.......awgeaeeefgaaldr...pl...geglvgealrtgrpvilndleedpdkkglpagha 88 
                 ++ l lv ++++e+  a+l+++ll+d d+g+++++       +++++ ++ g+ ++    ++   ge  ++e++ ++r +++++l+e     ++p   +
  KIR65783.1 231 TDALALVARRAREVaEAELAVVLLYDeDAGQFTVEvvdaadkPARGPADGAGEPVRGlvgAVlpaGETSFAESVTERRHTLVENLAE---AAPWP-TPV 325
                 688999*******956**998888883556677777788888666777777777766554114447777899999999999888666...44555.667 PP

                 TT--EEEEEE-TTS---EEEEE.S......--HHHHHHHHHHHHHHHHHHH CS
       GAF_2  89 glrsflavPlisegrvvGvlnl.yankppafdeedlelLeelaeqiaiaie 138
                   ++ ++ Pl + + ++Gvl++ y  ++++ +++d++lL ++a+q+a+a+e
  KIR65783.1 326 TAGPAVVSPLAAADTLHGVLVIaYPPDRGGATDDDVALLGSFAGQAALAME 376
                 77777*****99668******977888888*******************87 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHHHHHS.S...EEEEEEE-TTS- CS
       GAF_2   3 dleelldlvldelvel.g.aalgyillvdddgg 33 
                 dl+ +l+++l+ +v+    +++++ + v+  gg
  KIR65783.1 497 DLTAVLREALSNAVRHaEaSRVAVGVRVE--GG 527
                 56777777777777743323333222222..22 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   1.6e-16   4.1e-13       1     133 []      61     198 ..      61     198 .. 0.82
   2 !   22.5   0.2   5.3e-08   0.00014       4     132 ..     232     374 ..     229     375 .. 0.69
   3 ?    1.1   0.0      0.23   5.8e+02       1      74 [.     497     560 ..     497     584 .] 0.60

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 1.6e-16
                 SHHHHHHHHHHHHHHHHTESEEEEEE..EEETTE.EECEEEEECC......EEEETTSHHHHHHHHHSSSEEESTGGTSTT...HHTTHHHHHHHHTTE CS
         GAF   1 dleelldtvveelrellgadrvalyl..pdydGl.hydipqasrw......lfmkngrgicgqvlatgqplvipdstpdpr...faqynrrdllenmgi 87 
                 dl  +l+++v+ ++el+ga ++al    p  d l h  i+++ +          + grg+ g  + +++p++ pd+t++p    f +       +++ +
  KIR65783.1  61 DLRSTLQRIVAAACELVGAKYGALGVigP--DRLlHDFITHGIDAelhakiGDLPHGRGVLGLLIDEPRPVRMPDITKHPKsygFPP-------HHPPM 150
                 7899********************54343..3333443555555544446566666*********************9999644444.......68999 PP

                 SEEEEEEEEETTEEEEEEEEEESSS..CSHHHHHHHHHHHHHHHHHHH CS
         GAF  88 rsslvvPlvndgelwGllvlhnpsp..pftreelellqvladqvaval 133
                 +s+l+vP++ +++++G l+l  ++   +ft++++e++ +la+ ++va+
  KIR65783.1 151 HSFLGVPVRIREQVFGNLYLAEKQGaaEFTEDDEEIVVALAAAAGVAI 198
                 9*********************655799******************97 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 5.3e-08
                 HHHHHHHHHHHHHHTESEEEEEE.EEETTEEE.........CEEEEECCEEEETTSHHHHHHHHHSSSEEESTGG..TSTTHHTT..HHHHHHHHTTES CS
         GAF   4 elldtvveelrellgadrvalyl.pdydGlhy.........dipqasrwlfmkngrgicgqvlatgqplvipdst..pdprfaqy..nrrdllenmgir 88 
                 ++l+ v++++re+ +a+ ++++l ++  G  +         +   +++    +++rg++g+vl  g++   + +t  ++    ++  +   + ++    
  KIR65783.1 232 DALALVARRAREVAEAELAVVLLyDEDAGQ-FtvevvdaadKPARGPADGAGEPVRGLVGAVLPAGETSFAESVTerRHTL-VENlaEAAPWPTPVTAG 328
                 6788999999*****999888663344443.23544443333333444477777999999999999999999765333333.22123223333333444 PP

                 EEEEEEEEETTEEEEEEEEEESSS..CSHHHHHHHHHHHHHHHHHH CS
         GAF  89 sslvvPlvndgelwGllvlhnpsp..pftreelellqvladqvava 132
                  ++v Pl + + l G+lv+  p +    t+++++ll ++a q+a+a
  KIR65783.1 329 PAVVSPLAAADTLHGVLVIAYPPDrgGATDDDVALLGSFAGQAALA 374
                 8999*****************7666788****************98 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.23
                 SHHHHHHHHHHHHHHHHTESEEEEEEEEETTEEECEEEEECC...EEEETTSHHHHHHHHHSSSEEESTGGTSTTHH CS
         GAF   1 dleelldtvveelrellgadrvalylpdydGlhydipqasrw...lfmkngrgicgqvlatgqplvipdstpdprfa 74 
                 dl  +l+++++ + ++ +a rva+           +  +  w   +   +g+g c+ ++a g  +++ +  + +r+ 
  KIR65783.1 497 DLTAVLREALSNAVRHAEASRVAVG----------VRVEGGWvtvTVADDGKG-CDPAAARGGLVNLRE--RAERHG 560
                 6788999999999999999999993..........333334432222223444.555555555555554..444444 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0     1e-11   2.6e-08       2     129 .]      62     200 ..      61     200 .. 0.82
   2 !   34.3   0.3   9.9e-12   2.5e-08      10     129 .]     238     377 ..     232     377 .. 0.68

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1e-11
       GAF_3   2 ldellekllkllvkllgaevgalllldedgnklqva.agwdgkpalse.sldedsalarralssgevvsepsfaeedg........lpdraalavPLva 90 
                 l  +l+ ++ ++++l+ga++gal++  +d+     + +g+d++   +   l+ +  +  +++++  +v  p+  + +          p+++ l vP+++
  KIR65783.1  62 LRSTLQRIVAAACELVGAKYGALGVIGPDRLLHDFItHGIDAELHAKIgDLPHGRGVLGLLIDEPRPVRMPDITKHPKsygfpphhPPMHSFLGVPVRI 160
                 66789************************998876625556666654479999999999**999999988777664444455555456788888***** PP

       GAF_3  91 grqviGvlalastkpra.fdaedlelleslArqiataier 129
                 ++qv+G l+la +++ a f+++d+e + +lA+ ++ aie+
  KIR65783.1 161 REQVFGNLYLAEKQGAAeFTEDDEEIVVALAAAAGVAIEN 200
                 99********87765555*********************8 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 9.9e-12
       GAF_3  10 lkllvkllgaevgalllldedgnkl..qvaagwdgkpalse.sld.edsalar...ralssgevvsepsf...........aeedglpd....raalav 86 
                 ++++ ++  ae +++ll+ded  ++   v+   d+++++ +   d +++++     ++l  ge  ++ s+           ae+  +p+    ++a++ 
  KIR65783.1 238 ARRAREVAEAELAVVLLYDEDAGQFtvEVV---DAADKPARgPADgAGEPVRGlvgAVLPAGETSFAESVterrhtlvenlAEAAPWPTpvtaGPAVVS 333
                 567788889999999999998765512444...333333333344333333334448888888877766622222222222334445546677****** PP

       GAF_3  87 PLvagrqviGvlalastkpra.fdaedlelleslArqiataier 129
                 PL+a +++ Gvl++a++++r   +++d++ll s+A+q+a+a+er
  KIR65783.1 334 PLAAADTLHGVLVIAYPPDRGgATDDDVALLGSFAGQAALAMER 377
                 ****99********999988769*******************98 PP

>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       2.9   7.3e+03      37      49 ..      28      40 ..      20      53 .. 0.54
   2 ?   -2.5   0.3         3   7.7e+03      42      59 ..     214     231 ..     188     246 .. 0.73
   3 !   50.2   1.5     1e-16   2.7e-13       2      65 ..     393     454 ..     392     457 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.9
                HHHHHHHHHHHHH CS
     HisKA_3 37 kaaeqlreieela 49
                 ++e+l+++ e +
  KIR65783.1 28 LLQEMLDRVGEVV 40
                3445555554433 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3
                 HHHHHHHHHHHHHHHHHH CS
     HisKA_3  42 lreieelarealqevRrl 59 
                 l++ +e  +  l+evRr+
  KIR65783.1 214 LAATAEITSVLLGEVRRT 231
                 556666667777788774 PP

  == domain 3  score: 50.2 bits;  conditional E-value: 1e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T CS
     HisKA_3   2 RariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLr.p 65 
                 R+riAR+LHD+v q+L+a+ lql+  +++++   +++a+++ ++ + ++ +++++Rr++ +Lr p
  KIR65783.1 393 RERIARDLHDVVIQRLFATGLQLQSGAMNAR---PEVAKRINAAVDDLDATIRDIRRTIFELRtP 454
                 9**************************8884...3799*************************44 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.042   1.1e+02      44      78 ..     238     273 ..     191     306 .. 0.70
   2 !   30.1   0.1   1.5e-10   3.8e-07      24      98 ..     490     560 ..     457     562 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.042
  HATPase_c_2  44 vehayleap.egpvevrlesdeealtvevaDsGpgf 78 
                   + a++ a+ e  v + ++ d++++tvev D +   
   KIR65783.1 238 ARRAREVAEaELAVVLLYDEDAGQFTVEVVDAADKP 273
                  444444444344555668899999******987653 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 1.5e-10
  HATPase_c_2  24 lseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeepkeslkeg 98 
                  ++e ++ ++  ++ Ea++Nav+ha       +v v ++++++++tv+vaD+G+g dp++++ + ++  +  ++ g
   KIR65783.1 490 VPEPVRPDLTAVLREALSNAVRHAEA----SRVAVGVRVEGGWVTVTVADDGKGCDPAAARGGLVNLRERAERHG 560
                  566666788999*************8....6888888889*****************998888877655555554 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   6.6e-09   1.7e-05       5      91 ..     497     562 ..     494     583 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 6.6e-09
                 HHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTE CS
   HATPase_c   5 rLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGe 91 
                  L+ +++++++Nav++ ++a+++ v ++++ ++++++v D+G+G +++                      G Gl   ++ +e++gGe
  KIR65783.1 497 DLTAVLREALSNAVRH-AEASRVAVGVRVEGGWVTVTVADDGKGCDPAAAR-------------------G-GLVNLRERAERHGGE 562
                 6899************.999999999998789*************997655...................3.444444444444444 PP

>> H-kinase_dim  Signal transducing histidine kinase, homodimeric domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.2   0.00035       0.9      11      36 ..      29      54 ..      22      78 .. 0.74
   2 ?    3.3   0.0     0.043   1.1e+02      38      67 ..     376     405 ..     296     407 .. 0.78
   3 ?   -1.2   0.0       1.1   2.8e+03      41      63 ..     430     452 ..     414     455 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00035
  H-kinase_dim 11 lDyLlnlvGElVitkarLnqsleefr 36
                  l ++l+ vGE+V ++ rL+ +l+ + 
    KIR65783.1 29 LQEMLDRVGEVVTSRERLRALLDAVV 54
                  66789**************9998776 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.043
  H-kinase_dim  38 englkasvtelksslqnlgrisgeLQegvm 67 
                   e  + +  +el   l+  +ri+++L++ v 
    KIR65783.1 376 ERARGQEERELLVVLEDRERIARDLHDVVI 405
                   4555677777888888889********997 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.1
  H-kinase_dim  41 lkasvtelksslqnlgrisgeLQ 63 
                     a+v++l ++++ ++r + eL+
    KIR65783.1 430 INAAVDDLDATIRDIRRTIFELR 452
                   34666777777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 3874.01
//
Query:       KIR65784.1  [L=340]
Description: nitroreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-09   37.6   5.1    0.00062   19.8   0.1    3.7  3  Nitroreductase  Nitroreductase family
  ------ inclusion threshold ------
       0.24   10.9   0.0       0.48    9.9   0.0    1.5  2  TM1586_NiRdase  Putative TM nitroreductase


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   4.4e-06      0.04      19      50 ..      15      47 ..       7      57 .. 0.75
   2 !    3.9   0.1    0.0054        48     107     139 ..      56      88 ..      48     104 .. 0.85
   3 !   19.8   0.1     7e-08   0.00062      96     151 ..     229     289 ..     122     305 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.4e-06
                    HHHHHHHHHHTS--GGG---EEEEEE..-CCCH CS
  Nitroreductase 19 elekileaarraPsagnlqpwrfvvv.qdkelr 50
                     l++  ++a +aPs +n+qpwr  v+ +  elr
      KIR65784.1 15 ALAEAAATAGHAPSVHNTQPWRWRVLpDALELR 47
                    46666778899************9996666655 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0054
                     HHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEE CS
  Nitroreductase 107 aaerayryalldagaaaqnllLaAtalGlgscp 139
                     a + + r ++l++gaa++   +a++a+G+++++
      KIR65784.1  56 ATDPEGRLSALSCGAALHHARVALAAEGWAFVV 88 
                     566778899********************9876 PP

  == domain 3  score: 19.8 bits;  conditional E-value: 7e-08
                     E..---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHH...HHH CS
  Nitroreductase  96 i..vatldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaae...evr 151
                         ++++++    ++++++ ++l ag a+   +L+At+lG+ ++p++g+ e+++   ++r
      KIR65784.1 229 GpgHDRAAAYGVLFGDEDEPDSWLRAGEALSAGWLTATRLGVSMVPLSGVVEVEGtrqTLR 289
                     256666777777799***********************************99886555444 PP

>> TM1586_NiRdase  Putative TM nitroreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   5.4e-05      0.48     159     213 ..      15      77 ..       5      79 .. 0.72
   2 ?   -3.3   0.0      0.62   5.5e+03       3      33 ..     119     150 ..     118     172 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 5.4e-05
                     HHHHHHHHHHTS--GGG----EEE.E-SSEE..............EEE-S-HHHHHHHHHHHHH CS
  TM1586_NiRdase 159 wfkeileaarlAPsAlNqqpwrfelkdddeiki.........kasvlgklskiDlGIallHfel 213
                      + e+   a  APs  N+qpwr ++  d  +++           +  g+ls + +G al H  +
      KIR65784.1  15 ALAEAAATAGHAPSVHNTQPWRWRVLPDA-LELrvvrdrqlaATDPEGRLSALSCGAALHHARV 77 
                     55666677889***********9977753.3333466777643355589999999999999876 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.62
                     HHHHHH--B---.B--S---HHHHHHHHH--- CS
  TM1586_NiRdase   3 yeaiekRhsvRk.Ykdealeeelleelkeaie 33 
                     ++ ++ Rh+ R+   de+++ + l ++ +a++
      KIR65784.1 119 VQCMQVRHTDRRpVGDEPVPTAALGDIAAAVA 150
                     56788888865414577777777777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2664.76
//
Query:       KIR65785.1  [L=773]
Description: ATPase P [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-36  124.1   1.3    9.3e-36  124.1   1.3    2.0  2  Hydrolase     haloacid dehalogenase-like hydrolase
    1.5e-33  115.9   0.6    1.5e-33  115.9   0.6    2.8  3  E1-E2_ATPase  E1-E2 ATPase
    1.7e-16   61.0   1.1    1.7e-16   61.0   1.1    2.3  2  Hemerythrin   Hemerythrin HHE cation binding domain
     0.0028   18.1   0.2     0.0028   18.1   0.2    3.3  3  HAD           haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.021   14.6   0.9       0.11   12.2   0.5    2.2  3  Hydrolase_3   haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.1   1.3   2.6e-39   9.3e-36       2     210 .]     318     529 ..     317     529 .. 0.87
   2 ?   -2.6   0.0       1.5   5.6e+03      38      95 ..     580     641 ..     549     675 .. 0.47

  Alignments for each domain:
  == domain 1  score: 124.1 bits;  conditional E-value: 2.6e-39
                 SEEEEESBTTTBCHHHHHHHHHHHH......CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH...HHHHHETTTE.............HHHHTHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx.............xxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsa......alalaaaletgsehpigkalvaaakarsgal...tgfatfigrg.............ayaigkpewlt 78 
                 +t++ Dk+GTLt g+p+  +++v         l laa  e  s+h +++alv++a +r+  l   t++++ +grg             ++    p+w +
  KIR65785.1 318 RTLLVDKTGTLTAGRPRAAETVVAPggdrdeVLRLAASVEQLSPHVLAAALVRQARERGLRLtdpTDVTEEPGRGvtgrvdgrlvrvgQLGGELPQWAA 416
                 699*********************955555555555555555****************55554569**********97777776666666666666666 PP

                 HHHCHHHHHHHHHHHHHHCHHHHHH..TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTE.EEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  79 aldippdlgaaigsaqsqgrtvall..qaralavftiadplkvkpeaaeavasLkaagi.evvlltgdnpetaeraanqlGddyfdaviasdietvakp 174
                 +           + a+ +gr+++++  + + l+ + ++dp  v+p+a+ +v++L++ag+ +++++tgd p ta+ +a+ +G           +++ a  
  KIR65785.1 417 RA---------AERAELAGRSAVWVsdEREPLGAILLEDP--VRPDARRTVRRLREAGLtRLIMVTGDRPGTADQVAQAVG----------VDDVLARC 494
                 66.........**************7777***********..*****************99********************..........6666**** PP

                 SHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 175 spegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                  p+ k a +re   + + ++mVGDgvnDa+ala+A+
  KIR65785.1 495 TPQEKTARVREE-SRRAVTVMVGDGVNDAPALAEAD 529
                 ***********9.77889*****************8 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.5
                 HHCHHHHHHHHHHHHHHHHHHHHHHETTTE....HHHHTHHHHHHHH.......HCHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
   Hydrolase  38 sehpigkalvaaakarsgaltgfatfigrg....ayaigkpewltal.......dippdlgaaigsaqs 95 
                      ++ lvaaa  +++    f +   +g    +   +  +    l       d+ppd ++  g + +
  KIR65785.1 580 MALAVAAMLVAAAGRLPPVAGAFLQ---EGidvvV-ILNALRA---LggglrrrDVPPDTRELLGRYAG 641
                 3344444444444444333333333...2222221.1111111...12223444556666555555544 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.3       1.3   4.5e+03     127     159 ..      30      62 ..      20      72 .. 0.55
   2 !  115.9   0.6   4.1e-37   1.5e-33       4     181 .]     132     301 ..     129     301 .. 0.95
   3 !    4.5   0.3     0.006        22     109     157 ..     562     612 ..     542     614 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.3
                   HHHHHHH.HHS-STTTSSTTHHHHHHHHHHHHHS CS
  E1-E2_ATPase 127 lliallv.flialllgkslaeallralallvaai 159
                   l++a+l+ + ++l  ++++a++l  a + ++a  
    KIR65785.1  30 LTLAVLAgAGLWLAGRRTWADWLWAAAT-VTALA 62 
                   3344443044555555555555555444.34444 PP

  == domain 2  score: 115.9 bits;  conditional E-value: 4.1e-37
                   --EEEEE.-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTST CS
  E1-E2_ATPase   4 pptakvi.rdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkiar 99 
                   p+ta+++  +g +e+++ + + +GD +++ +gd+vp+Dg + e+ a++des++TGEs+ v++ +g++v sG  +    +  ++t+ +  ++++ i+r
    KIR65785.1 132 PRTARRRvPGGGIETVPLDRVAVGDRLVVGPGDVVPVDGTV-EEAATLDESVVTGESRLVQRAAGEQVASGVANAGAGFGLRATKSAAASTYAGIVR 227
                   6777777699*****************************97.55669************************************************** PP

                   TS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHT CS
  E1-E2_ATPase 100 lveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrlakk 181
                   l+eea+++k+p+++++d++++ +vp+ l++a l + +           ++ra+a+lv+a+Pc L la+p+a++ g++r a++
    KIR65785.1 228 LAEEATARKAPMVRMADRYAAAFVPFTLVLAGLGWWLS--------GEFVRAVAVLVVATPCPLLLATPIAIVSGLSRVARR 301
                   ******************************99988887........889******************************986 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.006
                   -HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.HHHHH.HHHHHHH CS
  E1-E2_ATPase 109 tplqkkldklgkvlvpvvlliallvflialllgksla.eallr.alallva 157
                    ++ + +++++ + ++v++++a++++l+a   + +++  a+l+ +++++v+
    KIR65785.1 562 VEIARYARRIATQSAVVGMALAVAAMLVAAAGRLPPVaGAFLQeGIDVVVI 612
                   5678999**********************9999998887777769999997 PP

>> Hemerythrin  Hemerythrin HHE cation binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       3.1   1.1e+04      81      94 ..     122     136 ..     111     147 .. 0.54
   2 !   61.0   1.1   4.7e-20   1.7e-16       6     129 ..     639     770 ..     635     771 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.1
                  HHHHHHHHHHH.HHC CS
  Hemerythrin  81 deirelleelr.ell 94 
                  +++r+lle++  ++ 
   KIR65785.1 122 RDLRALLERAPrTAR 136
                  444444444443333 PP

  == domain 2  score: 61.0 bits;  conditional E-value: 4.7e-20
                  HHHHHHHHHHHHHHHHHHHHH.HHHHCCC...HCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH.CCC.HHHHHHHHHHHHHHHHHHHHHH.HHCHTCG CS
  Hemerythrin   6 ldeeHralrallerlralada.aaevhga...lrklaelldelvdeleaHhaaEEellfPlledrpggravldvlereHdeirelleelr.ellkgle 98 
                  +  eH a+r+ l++lr+ ad  a + +     l +l+++ ++l   +++H+aaEE+ l+P+l++  g ++ ++ ++r H eir+l++++  +l++  +
   KIR65785.1 639 YAGEHAAVRDVLAALRDTADLvATHPD-SpdcLPALRAVHGRLTGRVLPHEAAEERQLYPALAGPLGSDEATSPMSRGHVEIRRLVDRIGgHLAQAGD 735
                  778*****************9544333.369********************************99999999*******************88888888 PP

                  .GSTCHHHHH...HHHHHHHHHHHHHHHHHHTHHH CS
  Hemerythrin  99 .epsaaafae...lleeladllreHiakEesilfp 129
                   +  ++++++   +l++l ++lr H+a+Ee+ +f 
   KIR65785.1 736 gPLRGDQVTDllaALYGLDAVLRLHLAQEEEDYFS 770
                  5455555666667888888**************97 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.38   1.4e+03      33     105 ..      87     159 ..      42     160 .. 0.51
   2 !   18.1   0.2   7.7e-07    0.0028      47     187 ..     409     525 ..     401     526 .. 0.81
   3 ?   -3.6   0.1       3.4   1.2e+04      53     102 ..     568     607 ..     545     613 .. 0.47

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.38
         HAD  33 alreklllalfrellrldraglaelleallagls.eelaaelerfvaevirpklldp.galellaahr.aaGdrvv 105
                 ++ +     +++ + +   +++ ++lea+ ++ +  +l a ler+ ++++r+    p g  e +   r a Gdr+v
  KIR65785.1  87 LAGALVVGEYLAGAVIALMLATGRALEAYAQRRAtRDLRALLERAPRTARRRV---PgGGIETVPLDRvAVGDRLV 159
                 33333333334444444445556666666666665555555555555554433...55666666544446666655 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 7.7e-07
         HAD  47 lrldraglaelleallagls.eelaaelerfvaevirpklldpgalellaahraaGd.rvvvvSgglrplvepllaelgadevlatelevddrltgelg 143
                 ++l + +++++++a lag s   + +e e ++ ++ ++   +p+a++ +++ r+aG  r+++v+g     +  +++++g+d+vla        +t +  
  KIR65785.1 409 GELPQWAARAAERAELAGRSaVWVSDEREPLG-AILLEDPVRPDARRTVRRLREAGLtRLIMVTGDRPGTADQVAQAVGVDDVLAR-------CTPQ-- 497
                 55666788888889999999888888888888.3333333679************************************9999999.......6666.. PP

         HAD 144 legkpvrgegkvaalrewlaaegegidleevvayGDspsDlpll 187
                          +k a++re       + +++ +v +GD+++D p+l
  KIR65785.1 498 ---------EKTARVRE-------ESRRAVTVMVGDGVNDAPAL 525
                 .........45688888.......33345599**********98 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.4
         HAD  53 glaelleallaglseelaaelerfvaevirpklldpgalellaahraaGd 102
                 +++ + +++  g++ ++aa l ++       + l p a ++l+    +G+
  KIR65785.1 568 ARRIATQSAVVGMALAVAAMLVAAA-----GR-LPPVAGAFLQ----EGI 607
                 4445555555555533333333322.....12.3244444444....444 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.94   3.4e+03      32      44 ..     102     114 ..      96     120 .. 0.82
   2 ?   -1.1   0.0      0.35   1.3e+03      18      57 ..     450     490 ..     445     494 .. 0.83
   3 ?   12.2   0.5     3e-05      0.11     206     232 ..     512     538 ..     506     561 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.94
                  SEEEEE-SS-HHH CS
  Hydrolase_3  32 ikvviATGRslra 44 
                  i +++ATGR l+a
   KIR65785.1 102 IALMLATGRALEA 114
                  6789*****9876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.35
                  HHHHHHHHHHHHTTSE.EEEE-SS-HHHHHHHHHHCCCCSE CS
  Hydrolase_3  18 ektkeaikklkekgik.vviATGRslravlpvleelgldlp 57 
                  + +++++++l+e+g + ++  TG  + ++ +v++++g+d  
   KIR65785.1 450 PDARRTVRRLREAGLTrLIMVTGDRPGTADQVAQAVGVDDV 490
                  667899999***99853888*****************9965 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 3e-05
                  EEEEESSGGGHHHHHHSSEEEEETTS- CS
  Hydrolase_3 206 viafGDgeNDieMLeaaglgvAmgnas 232
                  ++ +GDg ND + L  a++gvAmg   
   KIR65785.1 512 TVMVGDGVNDAPALAEADVGVAMGATG 538
                  8999*******************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 5374.10
//
Query:       KIR65786.1  [L=286]
Description: universal stress protein UspA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-57  192.6   8.9    4.3e-29  101.8   3.1    2.1  2  Usp       Universal stress protein family


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.3   4.9e-31   8.8e-27       4     141 .]       5     144 ..       3     144 .. 0.90
   2 !  101.8   3.1   2.4e-33   4.3e-29       4     141 .]     155     284 ..     153     284 .. 0.91

  Alignments for each domain:
  == domain 1  score: 94.3 bits;  conditional E-value: 4.9e-31
                 EEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH..HHHHHHCTTCEEEEEEEESSHHHHHHHHHH CS
         Usp   4 rIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleada..akaaaeaggvkvevvveegdpaeeilevae 100
                  IlV++Dgs +++ Al wAl++a+++g +++l++v +  + + +  +  + +  + + ++++ e++   a+a a+a+ ++v+v+ e+ d+ ++++++++
  KIR65786.1   5 EILVGYDGSADATLALNWALDEAEHSGRPIRLAYVFEWVTVAGWVGPGVAPGIWPDDTARRQVEELVakAAADAAAARPTVTVHGEVFDGPPALVLEER 103
                 59**************************************999988776665555555554444444557999999*********************** PP

                 HTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp 101 eedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                 + +a l+V+Gsrg++g+ +ll GS++ +v +ha+cpV+vVr
  KIR65786.1 104 SAEAGLLVLGSRGHGGFGGLLAGSTAVSVTAHAHCPVVVVR 144
                 ****************************************8 PP

  == domain 2  score: 101.8 bits;  conditional E-value: 2.4e-33
                 EEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHHT CS
         Usp   4 rIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaeee 102
                 r++V+vDgs++s  Al +A+e a++rg +l+++++++p+a+   ++ d +a+e ++ +   +         +++  ++v v+v +  ++++ ++v+ ++
  KIR65786.1 155 RVVVGVDGSDTSLLALGFAVERAAQRGVPLHVVRAWEPSADRDLGADDAAAAERAALDGPLA--------GWRETFPDVAVTVDVVAGRPAGALVEASR 245
                 8***************************************9999999999999999999974........46777777777777777777778888899 PP

                 TSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp 103 dadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                 da+l+VvGsrgr+gl+++llGSv +++l+ha+cpV vVr
  KIR65786.1 246 DAQLVVVGSRGRGGLRGMLLGSVGQQLLHHAHCPVAVVR 284
                 9*************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 2527.46
//
Query:       KIR65787.1  [L=800]
Description: phosphoketolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.8e-178  590.8   0.0     1e-177  590.5   0.0    1.1  1  XFP_N         XFP N-terminal domain
    1.4e-95  318.5   0.0      2e-95  318.0   0.0    1.2  1  XFP_C         XFP C-terminal domain
    7.9e-89  296.0   0.0    1.1e-88  295.5   0.0    1.2  1  XFP           D-xylulose 5-phosphate/D-fructose 6-phosphate p
  ------ inclusion threshold ------
      0.018   14.8   0.1      0.052   13.3   0.1    1.7  1  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b


Domain annotation for each model (and alignments):
>> XFP_N  XFP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  590.5   0.0  2.3e-181    1e-177       2     363 ..      11     372 ..      10     373 .. 0.99

  Alignments for each domain:
  == domain 1  score: 590.5 bits;  conditional E-value: 2.3e-181
       XFP_N   2 iseeelkkldkywraanylavgliylkdnpllreplkeedvkarllGhwGtvpGlsflyahlnriikkydqnmlyvvGPGhGgpalvaasylegsysel 100
                 ++e+el++ld+ywraanyl+vg+iyl dnpllrepl++e+vk rllGhwGt+pGl++lyahlnrii ++++ +++++GPGhGgpalva+++leg+ysel
  KIR65787.1  11 LTEDELRRLDAYWRAANYLTVGQIYLLDNPLLREPLRPEHVKPRLLGHWGTSPGLNLLYAHLNRIIVNRKLPTIFITGPGHGGPALVANTWLEGTYSEL 109
                 6899*********************************************************************************************** PP

       XFP_N 101 ypeiskdeeGlkklfkqfsfPGGipshvaaetPGsiheGGelGyalshayGavldnPdlivacvvGdGeaetGPlatswhsnkflnPaedGavlPilel 199
                 y ++s+de G+++lf+qfsfPGGipshva+e+PGsiheGGelGyalshayGa++dnPdl+vacv+GdGeaetGPla sw sn flnPa+dGavlPil+l
  KIR65787.1 110 YHSVSRDETGMQRLFRQFSFPGGIPSHVAPEVPGSIHEGGELGYALSHAYGAAFDNPDLLVACVIGDGEAETGPLAGSWLSNVFLNPARDGAVLPILHL 208
                 *************************************************************************************************** PP

       XFP_N 200 nGykisnptilarisdeelkklfeGlGyepafvededteslhkllaevldkaveeihdiqkearsneeasrPkwPmiilrtPkGwtgPkyvdGkkvegs 298
                 nGyki+npt+l ri+ ++l ++++G+Gy+p++v+++d++++h++la++ld av+ei +iq++ars    +rP+wPmiilrtPkGwtgP  vdGk+veg+
  KIR65787.1 209 NGYKIANPTVLDRIPTDDLLDMMRGFGYQPYVVAGDDPATVHQTLAATLDRAVDEIAEIQRRARSGGPVERPRWPMIILRTPKGWTGPAVVDGKQVEGT 307
                 *************************************************************************************************** PP

       XFP_N 299 frahqvPlalarentaklellkewlksykpeelfdedgslkeelkelaPkgekrlaanpeanggl 363
                 +rahqvP+a  r+n+++l +l+ wl+sy+peelfd  g++++el +l P g++r++anp++ngg+
  KIR65787.1 308 YRAHQVPIAEVRDNPEHLAELERWLRSYRPEELFDPTGAPVAELAALPPTGDLRMSANPVTNGGR 372
                 ***************************************************************97 PP

>> XFP_C  XFP C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.0   0.0   4.4e-99     2e-95       1     202 []     587     788 ..     587     788 .. 1.00

  Alignments for each domain:
  == domain 1  score: 318.0 bits;  conditional E-value: 4.4e-99
       XFP_C   1 KqpepqylsldeAeehckkGasiwewastdegeepdvvlagiGdeptlEvlaAvellreelpelkvrvvnvvdLmklqeesehphglsdeefdelFtkd 99 
                 Kqp+p++l++deA++hc++G++iw+wastd geepdvvla++Gd+ptlE+laA++llr++lpel+vrvvnvvdLm+lq++sehphgl d+efd++Ft+d
  KIR65787.1 587 KQPAPNWLTMDEAIQHCRRGLGIWDWASTDGGEEPDVVLACAGDVPTLETLAAADLLRQRLPELRVRVVNVVDLMRLQPPSEHPHGLPDNEFDTIFTRD 685
                 9************************************************************************************************** PP

       XFP_C 100 kpvifnfHgYptlikrLlykrknherlhvrgYkeeGtttTpfdmlvlnevdRfhlaidaikrveklkkkaaelaeklkekleehkkyireegeDlpeve 198
                 kpvif++HgYp+li+rL+y+r+nh++lhvrgYkeeGtttTpfdm++ln++dRfhl+id+i+rv+ l+++aa+l++++ ++++++++++re+geD p+v+
  KIR65787.1 686 KPVIFAYHGYPWLIHRLTYRRANHDNLHVRGYKEEGTTTTPFDMVMLNDLDRFHLVIDVIDRVPGLAARAAHLRQEMVDARQACRDHTREYGEDDPRVA 784
                 *************************************************************************************************** PP

       XFP_C 199 dwkw 202
                 +w+w
  KIR65787.1 785 EWRW 788
                 **98 PP

>> XFP  D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.5   0.0   2.5e-92   1.1e-88       2     176 .]     402     576 ..     401     576 .. 0.99

  Alignments for each domain:
  == domain 1  score: 295.5 bits;  conditional E-value: 2.5e-92
         XFP   2 algkylrdvlkknpenfrifgPDetaSnrLnavfevtkrqwqeeieeedeelaaeGrvievlsEhlcegllegYlltGrhglfasyEaflrivdsmvnq 100
                 +lg+++rd++++np++fr+fgPDe+aSnrL a+fevt+r++ ++  + d++l+++Grv+evlsEhlceg+legYlltGrhg+f+syEaf++ivdsmvnq
  KIR65787.1 402 VLGAWVRDIITANPHTFRLFGPDEVASNRLGAAFEVTDRAFVANRVDGDDHLSPDGRVMEVLSEHLCEGWLEGYLLTGRHGIFTSYEAFIHIVDSMVNQ 500
                 589****************************************99999*************************************************** PP

         XFP 101 hakflkkakelewrkdvaslnllltstvwrqdhNgfsHqdpglidavlnkkaevvrvylPpDaNtllsvldhclrs 176
                 hak+lk+++ ++wr+++asln+ll+s+vwrqdhNgfsHqdpg+id+v+nkkaevvrvylPpD Ntlls++dhclrs
  KIR65787.1 501 HAKWLKVTRGIPWREPIASLNYLLSSHVWRQDHNGFSHQDPGFIDHVVNKKAEVVRVYLPPDGNTLLSTMDHCLRS 576
                 **************************************************************************97 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.2e-05     0.052      28      57 ..     149     178 ..     136     181 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
                   S-TTTHHHHHHHHHHHSTTSEEEEEEEHHH CS
  TPP_enzyme_C  28 gtmGyglpaAiGaklakpdrevvaivGDGg 57 
                   g +Gy+l+ A Ga++ +pd  v +++GDG 
    KIR65787.1 149 GELGYALSHAYGAAFDNPDLLVACVIGDGE 178
                   779**************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 5387.53
//
Query:       KIR65788.1  [L=281]
Description: universal stress protein UspA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-29  103.0  14.2      1e-18   68.2   2.8    2.3  2  Usp       Universal stress protein family
  ------ inclusion threshold ------
       0.24   11.1   0.0       0.37   10.5   0.0    1.2  1  DUF2855   Protein of unknown function (DUF2855)


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   3.7   4.7e-14   4.2e-10       5     141 .]       9     139 ..       7     139 .. 0.92
   2 !   68.2   2.8   1.1e-22     1e-18       5     141 .]     148     271 ..     146     271 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 4.7e-14
                 EEEEE-SSHHHH.HHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHHT CS
         Usp   5 IlVavDgseesk.kAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaeee 102
                 ++ a+ gs+es  ++++ A+++a+ +  +l+llh+   +a  +++    + +++e+ le+a+++       a +++++v v  e  ++a++ ++v ++e
  KIR65788.1   9 VVAAL-GSPESAgQVVRLAAREAAGHRRPLRLLHAFNWSAALEAPSVTGPRARAEELLEQAAAA-------AGEAEPAVPVSGEIVEGAPVAALVRRSE 99 
                 56666.9999999***************************999999999999999999999774.......689************************* PP

                 TSSEEEEESCCSSTTTTCS.SBHHHHHHHHHTSSEEEEEE CS
         Usp 103 dadliVvGsrgrsglsrll.lGSvseyvlrhapcpVlvVr 141
                 +a l+V+G  g+s+    +     + +++++a cpVlvVr
  KIR65788.1 100 SAFLVVIGDGGMSRCGACIpADAPAVQLAARAGCPVLVVR 139
                 *****************552777****************8 PP

  == domain 2  score: 68.2 bits;  conditional E-value: 1.1e-22
                 EEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHHTT CS
         Usp   5 IlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaeeed 103
                 +lV+vDgs +s+ Al +A+  a++r a+l +++v++p++ +    +   ae +e + +  +++           +v++e++v++gdp+ +   v+++++
  KIR65788.1 148 VLVGVDGSASSRTALAFAFGCAARRSARLLAVRVVEPPPEDRNVLGTARAELAEVVARCGRRH----------PEVSTECHVVVGDPGAVM--VEQSRS 234
                 8****************************************9999999999999999998765..........899***********9965..567788 PP

                 SSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp 104 adliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                 a+l Vv++rg   l+  +lG vs+++l h+p pV+vVr
  KIR65788.1 235 AQLTVVAARGDEPLR-GMLGAVSQSLLYHSPAPVIVVR 271
                 **********55555.589******************8 PP

>> DUF2855  Protein of unknown function (DUF2855)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.1e-05      0.37     150     172 ..     154     176 ..     148     187 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.1e-05
     DUF2855 150 lsASsKTAlslayllrkrrkaee 172
                  sASs+TAl++a+  + rr+a+ 
  KIR65788.1 154 GSASSRTALAFAFGCAARRSARL 176
                 59****************99863 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2288.32
//
Query:       KIR65789.1  [L=78]
Description: hypothetical protein TK50_10730 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-05   22.9   0.1    0.00014   21.7   0.0    1.6  1  HTH_11         HTH domain
    7.3e-05   22.4   1.1    0.00029   20.5   1.1    1.9  1  HTH_23         Homeodomain-like domain
    0.00031   20.4   0.1     0.0041   16.8   0.0    2.0  2  Sigma70_r4_2   Sigma-70, region 4
      0.001   18.8   4.3      0.017   15.0   0.4    2.6  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain
      0.002   17.6   0.1      0.038   13.5   0.0    2.1  2  Sigma70_r4     Sigma-70, region 4
     0.0054   16.9   0.0     0.0064   16.7   0.0    1.2  1  UPF0122        Putative helix-turn-helix protein, YlxM / p13 
     0.0088   16.1   0.0      0.068   13.2   0.0    2.1  2  HTH_3          Helix-turn-helix
  ------ inclusion threshold ------
      0.013   15.5   0.1      0.014   15.3   0.1    1.1  1  Sigma70_ECF    ECF sigma factor
      0.051   13.5   0.0      0.088   12.7   0.0    1.3  1  Terminase_5    Putative ATPase subunit of terminase (gpP-like
      0.062   13.4   0.0      0.098   12.8   0.0    1.4  1  HTH_7          Helix-turn-helix domain of resolvase
      0.088   12.7   0.0       0.14   12.1   0.0    1.4  1  DUF433         Protein of unknown function (DUF433)
       0.16   12.0   0.3        1.1    9.2   0.3    2.0  1  HTH_15         Helix-turn-helix domain of alkylmercury lyase
       0.52   10.7   7.7        0.5   10.7   5.1    2.1  3  HTH_31         Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0     1e-07   0.00014      11      34 ..      40      64 ..      25      65 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1e-07
      HTH_11 11 eargp.isgeeLAeeLnvSrrtvrr 34
                +ar + +s +e+A+ L+vSr++v++
  KIR65789.1 40 NARRQgWSWQEIADALEVSRQAVHK 64
                566677******************8 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   1.1   2.1e-07   0.00029      13      35 ..      41      63 ..      20      65 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.1e-07
      HTH_23 13 llaeGlsvreIAreLgvsrrTvy 35
                + ++G+s++eIA++L vsr+ v 
  KIR65789.1 41 ARRQGWSWQEIADALEVSRQAVH 63
                3456***************9996 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.13   1.8e+02       2      11 ..      24      33 ..       6      37 .. 0.73
   2 !   16.8   0.0     3e-06    0.0041      24      45 ..      43      64 ..      41      67 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.13
                  HHHHHHHTTS CS
  Sigma70_r4_2  2 qalrealaeL 11
                  +alr++l++L
    KIR65789.1 24 RALRRLLERL 33
                  3566666666 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 3e-06
                  TS---HHHHHHHHT--HHHHHH CS
  Sigma70_r4_2 24 leglsykEIAellgisegtVks 45
                   +g+s +EIA  l++s ++V +
    KIR65789.1 43 RQGWSWQEIADALEVSRQAVHK 64
                  59******************87 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   1.8     0.039        54      21      38 ..       5      22 ..       2      34 .. 0.77
   2 !   15.0   0.4   1.2e-05     0.017      19      36 ..      47      64 ..      27      66 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.039
  HTH_AsnC-type 21 aeLAervGlSestvlrRv 38
                   +eLA++ G + ++v  R 
     KIR65789.1  5 TELAAAAGSTDPRVGLRA 22
                   789998888888887774 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.2e-05
  HTH_AsnC-type 19 syaeLAervGlSestvlr 36
                   s++e+A+++ +S+++v++
     KIR65789.1 47 SWQEIADALEVSRQAVHK 64
                   9***************96 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.075     1e+02      25      48 ..       6      29 ..       4      31 .. 0.82
   2 !   13.5   0.0   2.8e-05     0.038      19      39 ..      44      64 ..      30      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.075
                HHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4 25 EIgerlgiSrerVrqiekrAlrkL 48
                E+++  g +  rV  +  rAlr+L
  KIR65789.1  6 ELAAAAGSTDPRVGLRAVRALRRL 29
                777777888888889999999998 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.8e-05
                TT--HHHHHHHHTS-HHHHHH CS
  Sigma70_r4 19 eglTleEIgerlgiSrerVrq 39
                +g++ +EI++ l +Sr +V+ 
  KIR65789.1 44 QGWSWQEIADALEVSRQAVHK 64
                799***************986 PP

>> UPF0122  Putative helix-turn-helix protein, YlxM / p13 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.6e-06    0.0064      33      52 ..      45      64 ..      25      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.6e-06
     UPF0122 33 DlSlsEiAeefnvsrqavyd 52
                 +S +EiA+  +vsrqav+ 
  KIR65789.1 45 GWSWQEIADALEVSRQAVHK 64
                6899**************97 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.5   6.9e+02      13      24 ..       5      16 ..       1      19 [. 0.77
   2 !   13.2   0.0   4.9e-05     0.068       7      26 ..      43      62 ..      40      64 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.5
                HHHHHHHTSSHH CS
       HTH_3 13 eeLAeklGvsrs 24
                +eLA+++G +  
  KIR65789.1  5 TELAAAAGSTDP 16
                699***997765 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.9e-05
                HTTHHHHHHHHHHTSSHHHH CS
       HTH_3  7 qlglsqeeLAeklGvsrsti 26
                 +g+s +e+A++l vsr+++
  KIR65789.1 43 RQGWSWQEIADALEVSRQAV 62
                48****************98 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.1   9.9e-06     0.014     136     171 ..      30      65 ..       5      69 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.9e-06
  Sigma70_ECF 136 ldpeqarlvelrkleGlsveEiAeklgvskrtverr 171
                  l+     +v+ ++ +G+s +EiA++l+vs+++v+++
   KIR65789.1  30 LERLEVVQVDNARRQGWSWQEIADALEVSRQAVHKK 65 
                  333334457778889******************997 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.3e-05     0.088      12      31 ..      44      63 ..      43      66 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.3e-05
  Terminase_5 12 qGyrvaeIAeelglkeatVy 31
                 qG++ +eIA +l ++++ V+
   KIR65789.1 44 QGWSWQEIADALEVSRQAVH 63
                 9***************9998 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.1e-05     0.098      19      43 ..      43      67 ..      36      69 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.1e-05
                TTT--STTTSSSS---SSSS--SS- CS
       HTH_7 19 eeGisiskIAkevnisRsTvYRyla 43
                ++G s ++IA+++ +sR+ v +++a
  KIR65789.1 43 RQGWSWQEIADALEVSRQAVHKKHA 67
                689999***************9997 PP

>> DUF433  Protein of unknown function (DUF433)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.8e-05      0.14      18      50 ..      32      63 ..      31      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.8e-05
                --BTHHHHHHHHTT--HHHHHHHH.TS-HHHHH CS
      DUF433 18 RipVetilellaaGesieeiledyPdLtlediq 50
                R+ V ++ +  ++G+s +ei+++  ++++++++
  KIR65789.1 32 RLEVVQVDNARRQGWSWQEIADAL-EVSRQAVH 63
                77788888999*************.99999986 PP

>> HTH_15  Helix-turn-helix domain of alkylmercury lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.3   0.00082       1.1      23      58 ..      23      57 ..       4      69 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00082
      HTH_15 23 lrpLlrlLakGepVtveeLAaatgrsveevrqaLaa 58
                +r+L rlL   e V v++ A   g+s  e+++aL+ 
  KIR65789.1 23 VRALRRLLERLEVVQVDN-ARRQGWSWQEIADALEV 57
                799999**999*9*9998.99************985 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.2     3e+03      18      28 ..       5      15 ..       3      20 .. 0.70
   2 ?    0.8   1.4      0.48   6.6e+02      43      55 ..      19      31 ..       9      41 .. 0.56
   3 ?   10.7   5.1   0.00036       0.5       7      43 ..      24      74 ..      20      77 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.2
      HTH_31 18 eevAerlgvse 28
                +e+A+++g + 
  KIR65789.1  5 TELAAAAGSTD 15
                57888888665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.48
      HTH_31 43 spavlealaralg 55
                 +++++al r+l 
  KIR65789.1 19 GLRAVRALRRLLE 31
                4444555444443 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00036
      HTH_31  7 ralRera..............GLsqeevAerlgvsestlsrlEqGrrgrps 43
                ralR+                G+s +e A++l vs+  +++   Gr  +ps
  KIR65789.1 24 RALRRLLerlevvqvdnarrqGWSWQEIADALEVSRQAVHKKHAGRPAVPS 74
                444433355688888888888*******************99999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.42u 0.30s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 548.33
//
Query:       KIR65790.1  [L=194]
Description: Clp protease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-28   98.7  17.1    1.2e-15   57.3   2.2    3.4  3  Clp_N        Clp amino terminal domain, pathogenicity island 
    0.00075   19.6   1.8      0.046   13.9   0.1    2.8  3  DUF3572      Protein of unknown function (DUF3572)
  ------ inclusion threshold ------
       0.15   12.0   0.0        3.5    7.7   0.0    2.4  2  TFIID_30kDa  Transcription initiation factor TFIID 23-30kDa s


Domain annotation for each model (and alignments):
>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   1.1   1.4e-15   8.2e-12       1      50 [.      16      65 ..      16      68 .. 0.94
   2 !    6.1   0.5    0.0021        13      31      51 ..      79      99 ..      72     101 .. 0.86
   3 !   57.3   2.2   2.1e-19   1.2e-15       3      52 ..     141     190 ..     139     191 .. 0.95

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 1.4e-15
                HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHH CS
       Clp_N  1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiek 50
                A  +A+++g   i+tEHLLlA+l+++d+la+r+L +aGv  ++lr+a+ +
  KIR65790.1 16 AAHEARAAGRRPIGTEHLLLAVLADPDNLASRVLSAAGVRTADLRAAVAR 65
                6789*******************************************976 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0021
                HHHHHHTTSSHHHHHHHHHHH CS
       Clp_N 31 arlLkkaGvdldalrkaiekl 51
                a +L++ G+dl+a+ + ie++
  KIR65790.1 79 AAALREIGIDLAAIVARIEES 99
                679***************985 PP

  == domain 3  score: 57.3 bits;  conditional E-value: 2.1e-19
                 HHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHH CS
       Clp_N   3 elAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekll 52 
                 ++A++l+h +i+tEH+Ll+Ll+e++G+aa +L +aG+dld+lr+ +e +l
  KIR65790.1 141 REALRLRHRHIGTEHILLGLLREGGGPAALVLTEAGLDLDDLRRRVELAL 190
                 79********************************************9765 PP

>> DUF3572  Protein of unknown function (DUF3572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   7.8e-06     0.046      12      43 ..      35      66 ..      30      70 .. 0.89
   2 ?   -3.4   0.0       1.9   1.2e+04      32      40 ..     101     109 ..     100     111 .. 0.81
   3 !    4.3   0.1    0.0076        46      25      41 ..     171     187 ..     156     192 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.8e-06
     DUF3572 12 LawlagdpellgrFLaltGlepadLRaaaaep 43
                La la  ++l++r L+++G+  adLRaa+a++
  KIR65790.1 35 LAVLADPDNLASRVLSAAGVRTADLRAAVARH 66
                78888889999*****************9976 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.9
     DUF3572  32 epadLRaaa 40 
                 +p++LRaaa
  KIR65790.1 101 GPDALRAAA 109
                 689999987 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0076
     DUF3572  25 FLaltGlepadLRaaaa 41 
                  L+++Gl+ +dLR++++
  KIR65790.1 171 VLTEAGLDLDDLRRRVE 187
                 6999**********986 PP

>> TFIID_30kDa  Transcription initiation factor TFIID 23-30kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00058       3.5       4      23 ..      41      60 ..      41      68 .. 0.87
   2 ?    1.6   0.0     0.044   2.7e+02      10      23 ..     170     183 ..     168     192 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00058
  TFIID_30kDa  4 PDavtayyLekaGletsDpr 23
                 PD++   +L+ aG++t D r
   KIR65790.1 41 PDNLASRVLSAAGVRTADLR 60
                 9*****************98 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.044
  TFIID_30kDa  10 yyLekaGletsDpr 23 
                   +L++aGl+ +D r
   KIR65790.1 170 LVLTEAGLDLDDLR 183
                  689*******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1500.18
//
Query:       KIR65791.1  [L=333]
Description: ribonuclease BN [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-41  142.5  13.2      2e-41  142.3  13.2    1.0  1  Virul_fac_BrkB  Virulence factor BrkB


Domain annotation for each model (and alignments):
>> Virul_fac_BrkB  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.3  13.2   1.1e-45     2e-41       4     257 ..      47     302 ..      44     303 .. 0.89

  Alignments for each domain:
  == domain 1  score: 142.3 bits;  conditional E-value: 1.1e-45
  Virul_fac_BrkB   4 dlsllAaalayytllSlfPlllvllavlgllglddelqeqlldllaevlpegaaevvedilqrllnqa.slgllglavll...wsasggvsalrr 94 
                     d++  + ala  + l+++P+l++l+++++ lg  de  + ++d +  + p++  +vv ++l++ + +  +++l  +++ll   ++ +  +++++r
      KIR65791.1  47 DGFSHSRALALQLCLAVVPFLIALTGLITDLG-ADEGGRVVADTVLALTPGQSEQVVGELLDSGERTEdAGELALTLGLLtglVALTTTMAQIER 140
                     78999***********************6666.5799999********9*988899999996554444334433333333488************ PP

  Virul_fac_BrkB  95 alnkiygveesrsflrkrllsllllllllvllllslvlsvflqslllasapllglglelsellllqllrwlvallllvlafallYrvlpnv.kvr 188
                     ++n+iygve+ r+ l+k+l++ +l l+++v  l+ ++++v ++s+   + + +++g +++++ ++ ++rw+++l+l+vla+all+r +p++ ++ 
      KIR65791.1 141 GANRIYGVERDRPALWKYLRAAVLALVAGVPALAGFLILVGGGSMGDSVRRNYAWG-DVATF-AWDVVRWPLSLGLTVLAVALLFRHAPRRkQPG 233
                     ********999*********************************887776666655.46677.6**************************97999 PP

  Virul_fac_BrkB 189 lraalpGallaallwllvkilfslylsnfasynaiYGslgaliilllWlylsalilLlGaelnaelqer 257
                     l+++++Ga +a++lw+l+++l++ y++   +++++YG+l+++++lllW +l++++l+ G +++a+l+ +
      KIR65791.1 234 LSWLFLGAGIATALWWLASLLLAAYVRFSDGFGQTYGALTGMMALLLWANLTGMALFGGLAFAAQLEAM 302
                     ****************************99***********************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2423.43
//
Query:       KIR65792.1  [L=496]
Description: phosphoesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-30  105.6  37.6      4e-18   65.5   8.9    3.8  5  PAP2           PAP2 superfamily
    7.2e-09   35.6  36.6      2e-05   24.4  11.0    3.8  3  PAP2_3         PAP2 superfamily
  ------ inclusion threshold ------
      0.011   15.7   2.2      0.073   13.0   0.0    3.2  4  Phage_holin_8  Putative phage holin
       0.13   12.8  11.8       0.87   10.2   0.1    3.3  3  PAP2_C         PAP2 superfamily C-terminal


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.6     7e+03     115     131 ..      29      45 ..      26      50 .. 0.71
   2 !   65.5   8.9   8.9e-22     4e-18       5     131 ..     103     219 ..      99     224 .. 0.86
   3 ?   -3.5   0.1       1.8   8.2e+03      88      98 ..     271     281 ..     264     292 .. 0.53
   4 ?    0.6   0.5     0.098   4.4e+02      63      91 ..     329     353 ..     302     370 .. 0.61
   5 !   52.7  11.3     8e-18   3.6e-14       5     132 ..     351     464 ..     324     468 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.6
        PAP2 115 aGlliGialaalayrlv 131
                 aG+++G++l ++ +r+ 
  KIR65792.1  29 AGVAFGLLLMLVRFRWS 45 
                 57777777777777775 PP

  == domain 2  score: 65.5 bits;  conditional E-value: 8.9e-22
        PAP2   5 lllalalaalltsvl....KdlvgrpRPfflaeetkldtqvstletseskeakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlva 99 
                 l+++l+++++   +l    K+lvgr+RP++  +     ++              sfPSgH++ +f+++ ++ l++ ++ ++++++ +++++++l++l++
  KIR65792.1 103 LAVYLIITGVGGLILdpslKTLVGRLRPVVDVPLASAPGN--------------SFPSGHALGSFVAYGAILLVFLPAMAPRWRKPAIAVAAVLVALIG 187
                 6677777666666644445**********99887777776..............********9999999999999999999999*************** PP

        PAP2 100 lsRlylgvHflsDvlaGlliGialaalayrlv 131
                 l+R++lgvHf+sDvl+G+l+G+a++ ++ + +
  KIR65792.1 188 LTRIALGVHFVSDVLGGWLLGAAWLGVTAYAF 219
                 ************************99887765 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.8
        PAP2  88 alillllavlv 98 
                 +++ +l+a+++
  KIR65792.1 271 LVFGALYAFGM 281
                 33333333333 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.098
        PAP2  63 fafalalllalllrrkrkkiglvllalil 91 
                  + ++++ l+l ++r++++    +l++ l
  KIR65792.1 329 LVSLVFCPLVLAVWRRWRP----VLFVAL 353
                 3344555666666666666....222222 PP

  == domain 5  score: 52.7 bits;  conditional E-value: 8e-18
        PAP2   5 lllalalaalltsvlKdlvgrpRPfflaeetkldtqvstletseskeakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlvalsRl 103
                 ++la++    l  ++  +v+rpRP + +  ++  t+              sfPSgH a++ +l+l++al++ ++  ++++ ++++ ++++ v+va+sR+
  KIR65792.1 351 VALAMFGELTLFLASARAVDRPRPPVENLDGQMPTS--------------SFPSGHIAATICLWLAIALIVFPRTDRWWRWIFVATAVVMPVGVAVSRM 435
                 333333333333334666777777776666665555..............*******99999999999999999999999******************* PP

        PAP2 104 ylgvHflsDvlaGlliGialaalayrlvq 132
                 y g+H+++D ++++l++++++ l+y++  
  KIR65792.1 436 YRGMHHPTDFMGAILLSALWIGLLYWVIR 464
                 *************************9876 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4  13.9   1.3e-06    0.0057     118     187 ..     135     211 ..      48     214 .. 0.65
   2 ?   -3.1   0.1       1.2   5.3e+03      62      80 ..     261     279 ..     256     292 .. 0.64
   3 !   24.4  11.0   4.5e-09     2e-05      65     187 ..     327     455 ..     318     458 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.3e-06
      PAP2_3 118 gtienglaafPSlHvawal......lvalalwrlrrkr.llrvlalllnvlmivatvatgnHYlvDviaGvalalva 187
                    +++  +fPS H+  ++      l++++ +   r+r    ++a++l++l+ ++ +a+g H++ Dv++G++l+++ 
  KIR65792.1 135 PLASAPGNSFPSGHALGSFvaygaiLLVFLPAMAPRWRkPAIAVAAVLVALIGLTRIALGVHFVSDVLGGWLLGAAW 211
                 334456678*****97665111111333332333333346899999**************************99875 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.2
      PAP2_3  62 flttlllatllgllvyalf 80 
                 +++ ll+ ++l++   ++f
  KIR65792.1 261 AVAELLVGWVLVFGALYAF 279
                 5555566666655555555 PP

  == domain 3  score: 24.4 bits;  conditional E-value: 4.5e-09
      PAP2_3  65 tlllatllgllvyalfPaagPrll.eeagfvdtvaaaslag....alrdgasravllrgtienglaafPSlHvawallvalalwrl..rrkr.llrvla 155
                 +ll++++ + lv a++ + +P+l+ + a f ++            a   +  r ++ +   + + ++fPS H+a ++++ la++ +   r+  ++r+++
  KIR65792.1 327 ILLVSLVFCPLVLAVWRRWRPVLFvALAMFGEL------TLflasARAVDRPRPPVENLDGQMPTSSFPSGHIAATICLWLAIALIvfPRTDrWWRWIF 419
                 678888888888999999999888433333333......2233334566677778888888899999*****998865555544432244435889988 PP

      PAP2_3 156 lllnvlm....ivatvatgnHYlvDviaGvalalva 187
                 ++ +v+m    +v+ ++ g H  +D +++++l ++ 
  KIR65792.1 420 VATAVVMpvgvAVSRMYRGMHHPTDFMGAILLSALW 455
                 776666533338999************999887765 PP

>> Phage_holin_8  Putative phage holin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.55   2.5e+03      84     108 ..      17      41 ..       6      48 .. 0.73
   2 ?   -3.2   0.0       1.8     8e+03      53      80 ..     102     129 ..      97     136 .. 0.71
   3 ?   -0.4   0.4      0.24   1.1e+03       9      46 ..     179     216 ..     145     225 .. 0.55
   4 ?   13.0   0.0   1.6e-05     0.073      71     111 ..     427     467 ..     415     472 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.55
  Phage_holin_8  84 drvldalgAlvasalavkvllllie 108
                    +r   +l A+v +++a  +ll+l++
     KIR65792.1  17 ERSIAGLVAVVGAGVAFGLLLMLVR 41 
                    5666677788888888888777765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.8
  Phage_holin_8  53 trlayflvSfiaGvlaaglaaaklatll 80 
                    + ++y+++  + G++  + + +++ +l 
     KIR65792.1 102 RLAVYLIITGVGGLILDPSLKTLVGRLR 129
                    4567888888999888877777766655 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.24
  Phage_holin_8   9 saaaaavtgvglagllpgidadvvlGAfaGavlfVvsa 46 
                    +a+ +a++g + + l  +   dv+ G + Ga+ + v+a
     KIR65792.1 179 AAVLVALIGLTRIALGVHFVSDVLGGWLLGAAWLGVTA 216
                    22233444444444444444455555555665555555 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 1.6e-05
  Phage_holin_8  71 laaaklatllpatdrvldalgAlvasalavkvllllieqaa 111
                    +++ +++++  + ++++d +gA+++sal + +l ++i+ +a
     KIR65792.1 427 PVGVAVSRMYRGMHHPTDFMGAILLSALWIGLLYWVIRPNA 467
                    466677777888899*********************98766 PP

>> PAP2_C  PAP2 superfamily C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00019      0.87       8      66 ..     146     209 ..     141     217 .. 0.70
   2 ?   -2.0   0.2       1.2   5.5e+03      42      42 ..     333     333 ..     307     363 .. 0.54
   3 ?    7.1   3.3    0.0018         8       8      72 ..     390     460 ..     387     462 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00019
      PAP2_C   8 SGHtvvltlav.....lfileyspkklailkvillllallglfliiasrkHYtvDVllglyitt 66 
                 SGH++  ++a+     +f+  ++p++ +    ++++l++l+ +  ia   H+  DVl g+++  
  KIR65792.1 146 SGHALGSFVAYgaillVFLPAMAPRWRKPAIAVAAVLVALIGLTRIALGVHFVSDVLGGWLLGA 209
                 77776665544111115556677888887777777777777778888899*********99865 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.2
      PAP2_C  42 l 42 
                 +
  KIR65792.1 333 V 333
                 1 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0018
      PAP2_C   8 SGHtvvltla....vlfileyspkklailkvillllallglfl.iiasrkHYtvDVllglyittlvf.lly 72 
                 SGH+++++ +    +l+++  + +++ ++ v +++++ +g+++  ++   H+  D + +++++ l   lly
  KIR65792.1 390 SGHIAATICLwlaiALIVFPRTDRWWRWIFVATAVVMPVGVAVsRMYRGMHHPTDFMGAILLSALWIgLLY 460
                 99998887651111445566677777677777777777776551577889*****9988888877655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 2998.80
//
Query:       KIR65793.1  [L=272]
Description: endonuclease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-07   31.6   6.5    1.9e-07   30.9   6.5    1.3  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
      0.052   13.4   0.1       0.16   11.8   0.1    1.8  1  PspC           PspC domain


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   6.5   2.1e-11   1.9e-07       1     233 []       5     260 ..       5     260 .. 0.66

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.1e-11
                    EEEEESTGCHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH.......TTCEEEEECCHECSSSTTSSEEEEEECSTEEEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   1 ltwNvngqaspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllal.......ggflgasstsptgggggggnggavlsrfpltslfrr 89 
                    +twN+  ++++ +  + r dr+a +++a+++D+l+ QE+++ +   ++++ a+                       + g  +avl+r+pl+ +   
     KIR65793.1   5 MTWNIKTGGRD-RTGPGRLDRVARVVAAHRPDLLAAQELRGFDSGGVLAGFAAavgmephL------------ARSCFGQPVAVLVRPPLRVVAAG 87 
                    8*******444.66789*********************99888888888887786654431............3346667789*******666222 PP

                    EEEETSSSSGCEEEEEEEEEEEEEEE.....................CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSC CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  90 tfiefndlvaalrreplaakleqlni.....................ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrv 164
                     +++  +                                         ++++   +r +  ++    + a + +rga +++aGD+N+   ++++ +
     KIR65793.1  88 -PVRRPF------------------HhaavrvtvatdagpltvigahLDPYSGLRRRVEAGWLAGAVGRAPGVGRGALALLAGDLNT--LAPGVDH 162
                    .222222..................12222222233344444444544444445555555555555555666778899999******..3333333 PP

                    GHHHHHHCTTTH........................H................SSCESCETTTTTTTTTTTEB-BEEEEEEC.HHHCCEEEEEEEC CS
                    xxxxxxxxxxxx........................x................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Exo_endo_phos 165 lrtrglalapap........................v................glyllgggptptyvtraggsrlDrilasp.alalfrsgvlppp 219
                    ++         +                                         +  +++  ++     ++ g+rlD+ l +     l rs+v+   
     KIR65793.1 163 TDRV-------ArlpaayrrrhlrrdgrtvetravaRlaaaglvdlyaalapgDDEGPTAPTRHGGGVEFSGMRLDYLLGTAaLAGLARSCVVVRG 251
                    3333.......23333344668887777766666550556667788888999999**************************966666666666666 PP

                    CHHEECTSSCSSSB CS
                    xxxxxxxxxxxxxx RF
  Exo_endo_phos 220 lalvrrealtlSDH 233
                    ++      + +SDH
     KIR65793.1 252 GD-----TEHASDH 260
                    65.....5567999 PP

>> PspC  PspC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   1.8e-05      0.16      13      34 ..      48      69 ..      47      86 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.8e-05
        PspC 13 gGVcaGlAeyfgvdptlvRlif 34
                gGV+aG+A+  g++p l R  f
  KIR65793.1 48 GGVLAGFAAAVGMEPHLARSCF 69
                8******************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      141  (0.00786435); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1881.83
//
Query:       KIR65794.1  [L=320]
Description: 5,10-methylene tetrahydromethanopterin reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-53  179.6   2.4    1.2e-52  179.4   2.4    1.1  1  Bac_luciferase  Luciferase-like monooxygenase
  ------ inclusion threshold ------
       0.14   12.7   0.1        0.4   11.3   0.1    1.7  1  PGM_PMM_II      Phosphoglucomutase/phosphomannomutase, alpha/


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.4   2.4   1.3e-56   1.2e-52      20     314 .]      13     291 ..       2     291 .. 0.91

  Alignments for each domain:
  == domain 1  score: 179.4 bits;  conditional E-value: 1.3e-56
  Bac_luciferase  20 aslrylvelaraaEelGfdavwvaehhggpgga....ldaftllaalaaaTerirlgtavtply.trhPavlAqqaatLdhlsgGRfglglgtgg 109
                     a +++lv++a++aE++Gfd +++++h+ ++  +    + a+++l+a+a aT+r +l++ vt++  ++hPav+Aq a t+  ls+GRf lglg+g+
      KIR65794.1  13 AGPKELVDYAVRAEAAGFDQLVISDHYYPWLDSqghsPYAWSVLGAVAHATSRAELMSFVTCPIrRYHPAVVAQKASTIGALSDGRFTLGLGAGE 107
                     5689**************************999999*99*************************9****************************** PP

  Bac_luciferase 110 paveerrfGv.dhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgpiPvyvaaaspaglelaarhadglllageppeeaaeli 203
                     + +e+   G+ + ++r+++++E+++++r l++ge+ +f+G +f v +a+++ rp+ + +P+ vaa++ +++ laa ++dgl+ +  p +++ +++
      KIR65794.1 108 NLNEHVVGGWpHVQQRHEMFEEALQIIRPLLNGETLTFSGNHFDVPDAYVWDRPERP-VPMAVAASGRQSATLAADYGDGLVATE-PDAHLIQMY 200
                     **********77799***************************************777.**********************99887.777666666 PP

  Bac_luciferase 204 erlragaaeagrdpadirvgisltvivadteeeAraearaliagldfyaldsegagreaeaaeiqeeedanlwagaadavpdelvaatalvG.tp 297
                     ++       ag+    +r+  ++ ++++++e+e+r+ a++ ++++        g+g++     + e   ++++a+a + v++++va+ + +G + 
      KIR65794.1 201 DDAGG----AGQ----PRF-GQVAICYGPDEAECRKIAHDQFRWF--------GMGWK----VNAELPGPESFAAATQYVREDDVAEGISCGpDT 274
                     66664....444....455.5899**************9999554........55555....999***************************777 PP

  Bac_luciferase 298 eqvaerlaayaeagvde 314
                     + ++++++ +++ag+++
      KIR65794.1 275 DRHVAAFKKFVDAGFTH 291
                     7*************997 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   4.5e-05       0.4      65      99 ..     246     280 ..     198     283 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.5e-05
                 --TT-TTTTHHHHGGGGG-SEEEEE-TTS-BEEEE CS
  PGM_PMM_II  65 peekealkllielvkkegadlglafDgDaDRlgvv 99 
                    +e+++++ ++v++++   g+++ +D DR++++
  KIR65794.1 246 LPGPESFAAATQYVREDDVAEGISCGPDTDRHVAA 280
                 334599*************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2799.53
//
Query:       KIR65795.1  [L=461]
Description: beta-mannosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-37  128.3   2.8    4.8e-37  127.9   2.8    1.1  1  Cellulase      Cellulase (glycosyl hydrolase family 5)
    9.1e-26   90.1  12.7    9.1e-26   90.1  12.7    2.3  2  CBM_2          Cellulose binding domain
  ------ inclusion threshold ------
      0.066   12.8   0.0       0.11   12.1   0.0    1.2  1  DeoC           DeoC/LacD family aldolase
        2.2    8.3   3.5        3.5    7.6   3.5    1.2  1  Mito_fiss_reg  Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.9   2.8   1.1e-40   4.8e-37       2     280 ..      41     285 ..      40     286 .. 0.85

  Alignments for each domain:
  == domain 1  score: 127.9 bits;  conditional E-value: 1.1e-40
                 TTTSEEEEGEEECET..TSCGGSHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESSTTTCSSSSTTTTH CS
   Cellulase   2 dasgkpvnlkglsts..wgnpyttkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHseegwltkadgnsse 98 
                 da+g+++ ++g+++   w++  ++++ ++++k+ g ntvR+ ++ g          + +n  ++v +v+ ++k+n+l ++l++H++ g+   +  ++s 
  KIR65795.1  41 DANGNEFIMRGVNHAhtWYQ--QQTSSFANIKALGANTVRVVLASGDR--------WAKNDTADVANVISLCKANKLICVLEVHDTTGY---G--EQSG 124
                 89***********9999*99..68999*****************5333........5678889**********************8444...3..3333 PP

                 HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHHHHTBHHHHHCT.....SGSSSST CS
   Cellulase  99 dtaeeffkklwtqiAerykkndevvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpnrliivegnswsgnldgavln.....dPndsqd 192
                 + + +   ++w  i++ +++++++vi ++ NEP+g n+g       + +++    +aik +Ra+g  ++i+v+ ++w+++ + ++ +     +  d+q+
  KIR65795.1 125 AITLDRAVDYWLSISSALAGQEKYVIVNIGNEPYG-NQG-------YGTWATDSANAIKRLRAAGLAHTIMVDAPNWGQDWSFTMRDnaasvFAADPQK 215
                 3334444566999**********************.444.......4678888999***********************7777666633334225559* PP

                 TEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTSSHHHHHHHHHHHHHHHHTTTEEEEEEESSS CS
   Cellulase 193 nliysvHfYgpsdfaqtefgkdltdktnlaqrledaakylvekgipviigEfGgsnadgdlakeeaekwldylkekgiswiyWslnpk 280
                 n+++s+H+Yg  d               +a +++d+ +++++  +p+++gEfG +++dg   + +++++l+y++++gi++++Ws++ +
  KIR65795.1 216 NTVFSIHMYGVFD---------------TAAEISDYLGRFRTAKLPIVVGEFGFDHSDG---NPDEDTILSYTQANGIGYLGWSWSGN 285
                 **********666...............4789***************************...8999999****************987 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.9       2.2   9.6e+03      62      88 ..     296     322 ..     278     331 .. 0.56
   2 !   90.1  12.7     2e-29   9.1e-26       1      93 [.     365     456 ..     365     461 .] 0.94

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.2
                 EE-STT-EE-TTEEEEEEEEEEE-SS- CS
       CBM_2  62 tnvswNgtiapGgsasfGfqgsktgsn 88 
                 tn + N+    G+ +  G +g k++s+
  KIR65795.1 296 TNFNPNALTTWGQRIFNGANGIKATSK 322
                 444444555557777777777666655 PP

  == domain 2  score: 90.1 bits;  conditional E-value: 2e-29
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S- CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsapts 93 
                 ++aty++  +W++Gf+++v+v+  gs+aingWt +wtl +gq++ q+Wnat+++sG+svtatnvs+Ng++ +G+s+sfGf gs tg+ +apt 
  KIR65795.1 365 CTATYTIIGQWQGGFQGEVKVT-AGSAAINGWTAKWTLGSGQSISQAWNATLTSSGSSVTATNVSYNGKLGAGASTSFGFIGSSTGTPAAPTV 456
                 89*******************9.6999***********************************************************9766664 PP

>> DeoC  DeoC/LacD family aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.4e-05      0.11      82     136 ..      62     113 ..      27     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.4e-05
                 TTCHHHHHHHTT-SEEEEEEEEHTTTTCHHHHHHHHHHHHHHHHHHHTEEEEEEE CS
        DeoC  82 evasveeakalGAdavkvvvyyradgseeeqqklaeikrvkeacheeglplilel 136
                 +  s +++kalGA+ v vv+     g+  +++  a+++ v + c++++l  +le+
  KIR65795.1  62 QTSSFANIKALGANTVRVVLAS---GDRWAKNDTADVANVISLCKANKLICVLEV 113
                 56778899**************...***************************996 PP

>> Mito_fiss_reg  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.5   0.00079       3.5     158     195 ..     323     363 ..     309     379 .. 0.47

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00079
  Mito_fiss_reg 158 pdllepksssaspsl.epssslpp..ppppppppippesps 195
                     +++++  ++++p++ +p++++pp  ppp  ppp++p+++ 
     KIR65795.1 323 EASVYSGVTPTTPPTtAPPTTPPPttPPPTTPPPTTPPATG 363
                    33333333444443334545444411333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.35
# Mc/sec: 3918.10
//
Query:       KIR65796.1  [L=353]
Description: regulatory protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-14   53.5   0.0    3.5e-14   52.6   0.0    1.4  1  MerR_1         MerR HTH family regulatory protein
    1.3e-09   38.0   0.7    3.6e-09   36.6   0.7    1.6  1  PP2C_2         Protein phosphatase 2C
    6.9e-09   35.3   0.2    1.8e-08   34.0   0.2    1.8  1  MerR           MerR family regulatory protein
    8.5e-06   25.6   0.0    2.7e-05   23.9   0.0    1.7  2  PP2C           Protein phosphatase 2C
    0.00015   22.2   0.3    0.00045   20.7   0.3    1.9  1  MerR-DNA-bind  MerR, DNA binding
  ------ inclusion threshold ------
       0.13   12.3   0.1       0.31   11.1   0.1    1.6  1  HTH_35         Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   1.2e-17   3.5e-14       2      66 ..       5      71 ..       4      72 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 1.2e-17
                EHHHHHHHHTS-HHHHHHHHHHTT-S-EE..-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XX CS
      MerR_1  2 sigevakilgvtthtlrywekegllkpkr..teggrryYtdedierLklikyLlkrGltlkgikkll 66
                +ig +a+++ +t++ lr +++ gll+p+    e g+r+Y+++++er +li  L+  G++l++i+ ++
  KIR65796.1  5 TIGGFARAARLTPKALRLYDEVGLLRPAAvdPESGYRLYDPAQLERARLIASLRRIGMPLAEIRAVC 71
                89**************************************************************985 PP

>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.7   1.2e-12   3.6e-09      10     187 ..     133     315 ..     127     320 .. 0.66

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.2e-12
      PP2C_2  10 lpcqDalavwtdsggsllaVaDGaGSakrSerGariaveavvealaelleseeeeeeallraleaailadvlkeeaeaq..daelkdyatTllaavvtp 106
                   ++Da      ++ +llaVaDG++   +     + a  a++  l+ l  ++ +  ++ll  l   +++    ++ + +   +++++  tTl a+++++
  KIR65796.1 133 DSNEDAAY----ADERLLAVADGMRGPGG-----AAASTAAIDVLRALEPADVPA-AELLALLADGVDE----AHRAVRglAVDPHQPVTTLTALLRSG 217
                 45667766....778999*****987655.....445555666666554333333.5555555555552....2233443466**************** PP

      PP2C_2 107 deivalqiGDGaivvrdrdgevqllgepds........geyanq.ttfltsedaeeel....................rirrlkledgdalllmTDGla 176
                  +++++++GD+ + +  r+ge+++l+ +++        g  a + +++                               +r   +++gd+ ll++DGl+
  KIR65796.1 218 SRVALVHVGDSRA-YLLREGELHRLTRDHTyvqslvdaGRLAPEaVAAH--------PqravlvralgaggehveadlALRA--ARAGDRYLLCSDGLS 305
                 *************.679********886665544444444444422222........2334455568888877776423322..5789**********7 PP

      PP2C_2 177 nslrdeerfae 187
                  +++d+++++e
  KIR65796.1 306 -AVVDPAAVRE 315
                 .6667777666 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.2   6.1e-12   1.8e-08       1      38 []       5      43 ..       5      43 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 6.1e-12
                EHHHHHHHHTTTHHHHHHHHHTT.SSTSEEETTTSSEEE CS
        MerR  1 tIgevAeltGvsprtLRyYEreG.LipppeRtegGyRlY 38
                tIg +A+++ ++p++LR Y++ G L p+++++e+GyRlY
  KIR65796.1  5 TIGGFARAARLTPKALRLYDEVGlLRPAAVDPESGYRLY 43
                8999*******************5555999999*****9 PP

>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0     9e-09   2.7e-05      24     141 ..     133     246 ..     110     251 .. 0.79
   2 ?   -1.3   0.0      0.45   1.3e+03     210     258 .]     299     343 ..     290     343 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 9e-09
                 CTCTTCCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCCT-EEEEEEEEEETTEEEEEEESS- CS
        PP2C  24 nlesssgkssvsffavfdghggseaakyarehleeilksqksfeelekleqalrksfladtdeelksskantepsksGstavvalirgtklyvAnvGDS 122
                 ++++  ++ +++++av dg+ g   a      ++ + ++ + + + ++l + l +++ + +   ++   a   p +  +t +  l +g++  + +vGDS
  KIR65796.1 133 DSNEDAAYADERLLAVADGMRGPGGAAASTAAIDVLRALEPADVPAAELLALLADGVDE-AHRAVRG-LAV-DPHQPVTTLTALLRSGSRVALVHVGDS 228
                 35556788899999999999988888888888887777777777777899999999999.4444444.223.589999999999999999********* PP

                 EEEEEETTEEEEECS---S CS
        PP2C 123 ravLcrkgnakkeltedHk 141
                 ra L r g+ + +lt+dH+
  KIR65796.1 229 RAYLLREGELH-RLTRDHT 246
                 **********8.******8 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.45
                 EE-HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCHHCHC CS
        PP2C 210 LacdGlwdvlsdqeavdlvrdelekkkspeevaeelvdeaiargsedni 258
                 L +dGl  v+++  +    r+ l   + p+e+ ++lv  a+a g+ dn+
  KIR65796.1 299 LCSDGLSAVVDPAAV----REALGGAGGPDEAVDRLVALAYAAGAPDNV 343
                 778888888877654....444444445888888999999988888885 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.3   1.5e-07   0.00045       1      39 [.      48      84 ..      48     101 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.5e-07
                   HHHHHHHHHHHHTT--HHHHHHHHHHHHSTTTBHHHHHH CS
  MerR-DNA-bind  1 leRLkfIrrarrlGFsLdeIrelLalyddrappcqdvra 39
                   leR ++I  +rr+G++L+eIr+   l+ +  +++++v+a
     KIR65796.1 48 LERARLIASLRRIGMPLAEIRAVCGLRPE--AAAEAVDA 84
                   68999*******************99444..44444443 PP

>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1    0.0001      0.31       3      42 ..      49      88 ..      47      95 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
      HTH_35  3 hpadIiAaLrkrgttLaalsreaglssstlsnaltrpwpk 42
                ++a  iA+Lr+ g+ La++    gl++++ ++a++  w++
  KIR65796.1 49 ERARLIASLRRIGMPLAEIRAVCGLRPEAAAEAVDAYWRR 88
                67899***************************99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.33
# Mc/sec: 3215.85
//
Query:       KIR65797.1  [L=710]
Description: alpha-galactosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.6e-109  364.9   0.0   4.4e-109  364.6   0.0    1.1  1  Melibiase        Melibiase
    8.6e-48  163.1   0.0    1.1e-47  162.7   0.0    1.2  1  Glyco_hydro_36N  Glycosyl hydrolase family 36 N-terminal doma
    1.2e-08   35.4   0.0    2.3e-08   34.4   0.0    1.5  1  Glyco_hydro_36C  Glycosyl hydrolase family 36 C-terminal doma


Domain annotation for each model (and alignments):
>> Melibiase  Melibiase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.6   0.0  7.4e-113  4.4e-109       1     346 [.     262     599 ..     262     600 .. 0.98

  Alignments for each domain:
  == domain 1  score: 364.6 bits;  conditional E-value: 7.4e-113
   Melibiase   1 sfqtPevvlvysdkGlnelsqkfhelvrerlvkskfaekerPvllnsWeavyfdfnedklkeladeaaklGielfvlDDGWfgkrnddnssLGDWfvne 99 
                 s+ tP + +++s+ Gl++ls + h  +r r   + + ++ rPv ln Weavyfd++ d+l++lad+aa++G+e+fvlDDGWf+ r+ d+++LGDW v+e
  KIR65797.1 262 SYATPLLYAAHSTAGLDGLSDALHAHLRAR---PGHPRTARPVTLNVWEAVYFDHDLDRLRALADHAAAVGVERFVLDDGWFVGRRHDRAGLGDWYVDE 357
                 799*************************99...6777889*********************************************************** PP

   Melibiase 100 eklpdgleelakevhekglkfGlWvePemvsadselyrehPdwvlqvedrsrtesrnqlvLdlsrpdvvdyiievldnllkea.qidyvkWDmnrhlte 197
                 + +p+gl++l+++v+ +g++fGlWvePemv++ds+l+r+ P+wvl v++r +   r+q+vLdl++p + +y++  ld+ll+++ +i y+kWD+nr+lte
  KIR65797.1 358 TVWPGGLQPLIDHVRGHGMQFGLWVEPEMVNPDSDLFRARPEWVLAVPGRLPPPWRHQQVLDLANPGAYAYVLGRLDALLRDHdGIAYLKWDHNRDLTE 456
                 ********************************************************************************87537************** PP

   Melibiase 198 igssaldaerqrevahryvlglydilerlttkfpkvlfesCssGGgrfDlGlleyvpqiWtsDntDaverlkiqygtslvyPisalgahvsavPneqtg 296
                 +g++  +       +h+++ + y++l++l+ ++p +++esCssGG+r+Dl +l  ++++W+sD++Da+erl+iq+ t l+ P+ ++g hv+    + t+
  KIR65797.1 457 AGHAGRP------GVHAQTAAAYRLLDELRARHPGLEIESCSSGGARVDLEILRRTDRVWASDCNDALERLAIQRWTGLLLPPELVGSHVGPDRSHTTH 549
                 *998887......78************************************************************************************ PP

   Melibiase 297 ratslelraavallGslGleldlaklseeekqavkkqvakykkvrelvlk 346
                 r+  l +raa al+G++G+e+d+ + s +++ +++ +va +k++r+l+  
  KIR65797.1 550 RVHDLGFRAATALFGHFGVEWDIGSASAADRVELAAWVALHKRLRPLLHA 599
                 *********************************************99876 PP

>> Glyco_hydro_36N  Glycosyl hydrolase family 36 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.7   0.0   1.9e-51   1.1e-47       1     252 [.      21     257 ..      21     258 .. 0.91

  Alignments for each domain:
  == domain 1  score: 162.7 bits;  conditional E-value: 1.9e-51
                      CCEEEEEEEE--S-----...TTS--S...TTT.-T....T--CCCS-BSS-BTTSS--S--SEEEE-TTS-----EEEEEEEEEES----TTS CS
  Glyco_hydro_36N   1 gllehlYwGkklsdteeredlsfaplsalakasrdr....glsldtlpqeyptsgkgdyrepaleirradGsrstdfrytsheiyegkpelegL 90 
                      gl+++ +wG++l      + l++++l+al++a+ ++    ++   t+   +p+ + g+ ++p+l+++ra   +st+fr++  +++++ p     
       KIR65797.1  21 GLPRVAHWGADL------GPLAADDLTALVAATVPPvvpsSFDAPTVLSLLPEASAGWSGRPGLAGHRAGTAWSTAFRLDALDVTNE-P----- 102
                      6899********......56677777777777777777665666667788******************666************9755.4..... PP

                      -----SGEEEEEEEEEETTTTEEEEEEEEEECCCTEEEEEEEEEE-SSS-EEEEEEEEEEEEESS--EEEEEEEEETTEEEEEEEEE--CEEEE CS
  Glyco_hydro_36N  91 PatyaeeaetleitlkDevagleltlsytvfeesdvitrsarltnegeepleleklasasldlpdadyellsltGaWarErqiqrrplthGkqs 184
                           +++ ++ +t+ D+ a l+lt+++++ ++ +++  + rl+n+g++p+el++l  + l++p+   ell+ltG+W+rEr++qr+p   G ++
       KIR65797.1 103 -----DGTARVAVTASDPDAALTLTVEVEL-DPAGLVLLRHRLRNDGDTPYELRELTGV-LPVPAVATELLDLTGRWCRERSPQRHPWPMGAWV 189
                      .....2479*********************.999**********************999.****7777************************** PP

                      EE--SSSS-SSBESEEEEEETT--SSSB-EEEEEES-SSSEEEEEEE-TTS-EEEEEEE-STT--.EEE CS
  Glyco_hydro_36N 185 iesrrGrsshqanpflalgepgtteesGevygfslvYSGNfraqaerdqfgkvrvlmGinpldfs.wkL 252
                      +e r+Gr++h+a+++l++g++g+++++Gev+++++++SG++++ aer ++g+   l+G+++l ++ ++L
       KIR65797.1 190 REGRHGRTGHDATLLLVAGTAGFGFRHGEVWAVHTAWSGDHVTFAERRPTGE-ATLGGGELLGSGeITL 257
                      ****************************************************.*******998887776 PP

>> Glyco_hydro_36C  Glycosyl hydrolase family 36 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   3.8e-12   2.3e-08       3      66 ..     614     695 ..     611     705 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 3.8e-12
                      EEEEE-TTSSEEEEEEEESS--SS---EEE---S--TTSEEEE.......................EEEHHHHHHT-EEE-- CS
  Glyco_hydro_36C   3 awmyvseDkseavvfyfqvlarpnaalrrlklkGLdpdkkYrv..................eeegktysGdeLmnaGLnlpl 66 
                      a+ +v++D ++av+++++v + +++ +  l+l+GLdp+++Y v                     g t  G+ L ++GL+lp 
       KIR65797.1 614 AHGVVAADHTHAVYAVARVATSVAQVPGALRLPGLDPARRYAVrptagvpepavleltepgWLPGVTLPGAVLASVGLHLPA 695
                      4569********************************************************955689**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5040.08
//
Query:       KIR65798.1  [L=303]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.3e-17   61.5  11.5    8.3e-17   61.5  11.5    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   2.0     0.016   2.9e+02     120     171 ..      30     104 ..      25     114 .. 0.63
   2 !   61.5  11.5   4.6e-21   8.3e-17       4     183 ..     108     296 ..      97     298 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.016
  BPD_transp_1 120 gllggavlleflgswpGlgtllleailgydyseis.............................nggvlalviavlllnlv 171
                   +l+ gav++ +l+   ++   +l+++ +y y++++                             +   +++v avll +++
    KIR65798.1  30 HLFLGAVAVGWLF---PILWAVLTSLRSYEYTAANgyvslggwtldnyvtawrtaefgkhflnsV---YITVPAVLLTLFL 104
                   6788888888888...6888888888888888888777777777777777777777777774442...3333333333333 PP

  == domain 2  score: 61.5 bits;  conditional E-value: 4.6e-21
  BPD_transp_1   4 lGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.........vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralG 91 
                   +++++a ++++kl+ +l++l+ +   lP  +l+i+l+ +f         + +  l+++ +++i++ + ++ ++ +++ ++++++lp++l+eaa ++G
    KIR65798.1 108 VAFVIA-RFSWKLNIVLLGLFTAANLLPQQALLIPLFRLFtevplplfmSDSELLYDSYWGLILVNVAFQCGFCVFVLSNYMKALPHELYEAAMVDG 203
                   455566.9******************************99*******998888899***************************************** PP

  BPD_transp_1  92 asrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..nggvlalviavlllnlvadilqrlldprv 183
                   as w+ +++v++P+  p +++++ l ++++ ++++++  l+   G   ++++++++    + +  n +++  v++ ++ ++++++lq+ + + +
    KIR65798.1 204 ASVWRQYWQVTMPLCRPALAALATLEVTWIYNEFFWATVLMRT-GDKFPVTSSLNNLRGEFFTdnNLVSAGSVLVAIPTLVIFFLLQKQFVRGL 296
                   *****************************************55.66666666665555555446667888899999999999999999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2427.75
//
Query:       KIR65799.1  [L=318]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-12   48.0  23.5    1.3e-11   44.6  23.5    2.2  1  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.026   14.9   0.1      0.026   14.9   0.1    3.5  3  MrpF_PhaF     Multiple resistance and pH regulation protein F
      0.038   13.8   2.1      0.038   13.8   2.1    3.5  4  Oleosin       Oleosin


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6  23.5   2.2e-15   1.3e-11       2     175 ..     116     307 ..      24     315 .. 0.89

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 2.2e-15
  BPD_transp_1   2 illGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvf...............vilsilghlilpviillllsaapyvrlirraalrslpk 81 
                   +++G+++a  l +  +++++ ++  +++  l   +++++++l+                 + ++    i++v++++ +  ++y++l++ a+l+ ++ 
    KIR65799.1 116 TPFGMFLAvlLDKEIRGSRFYQTALYLPVVLSLALIGFVWQLIYsrdqgllnaalgtstDWYGDPDVNIWAVLVAAGWRHVGYIMLLYLAGLKGVDP 212
                   799*****999999999999999999999999999999999888***************************************************** PP

  BPD_transp_1  82 dlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..nggvlalviavlllnlvadil 175
                   +l+eaa ++Gas+ ++f+kvv+P + p  i  l+++++ +l ++ l+  +  +   g+ l++a+  +++   +  +g   al+ ++l+++lv+  +
    KIR65799.1 213 SLREAAAVDGASEATTFFKVVFPVLRPINIIVLVVTVIESLRAFDLVWVVNKGR-NGLELISALVTQNVVGEAsrIGFGSALATLMLVVSLVFITV 307
                   ***********************************************9999444.66666666655555444468444444444444444444333 PP

>> MrpF_PhaF  Multiple resistance and pH regulation protein F (MrpF / PhaF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   2.4       1.8   1.1e+04      30      47 ..      45      64 ..      38      66 .. 0.58
   2 ?   14.9   0.1   4.3e-06     0.026      24      50 ..     135     161 ..     133     161 .. 0.87
   3 ?   -2.6   1.8       1.3   7.5e+03      15      25 ..     294     304 ..     289     313 .. 0.47

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.8
   MrpF_PhaF 30 yldvalvlAllgF..vgtva 47
                ++++ lv++l+ F  v+tva
  KIR65799.1 45 LVPLLLVVGLVWFpaVATVA 64
                55566666666653344444 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 4.3e-06
   MrpF_PhaF  24 ltgrpayldvalvlAllgFvgtvafar 50 
                 ++++++yl+v+l lAl+gFv  ++++r
  KIR65799.1 135 FYQTALYLPVVLSLALIGFVWQLIYSR 161
                 6899***************97777665 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.3
   MrpF_PhaF  15 vallallailt 25 
                 + l++++++++
  KIR65799.1 294 ATLMLVVSLVF 304
                 44444444433 PP

>> Oleosin  Oleosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.1   6.3e-06     0.038      27      55 ..      38      66 ..      36      73 .. 0.93
   2 ?   -1.5   0.3      0.35   2.1e+03      15      34 ..     104     123 ..      96     126 .. 0.71
   3 ?   -1.7   3.1       0.4   2.4e+03      37      59 ..     229     250 ..     196     264 .. 0.76
   4 ?   -3.2   1.4       1.1   6.8e+03      19      33 ..     293     307 ..     287     313 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.3e-06
     Oleosin 27 tvigLavatPllvlfSPvlvPaaiviaLa 55
                 vi+L+v+ Pll+++  v+ Pa+ ++aL 
  KIR65799.1 38 VVITLMVLVPLLLVVGLVWFPAVATVALS 66
                59************************996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.35
     Oleosin  15 ilLlLsGltLagtvigLava 34 
                  lL L++l +++t  g+ +a
  KIR65799.1 104 NLLWLAALFVVATPFGMFLA 123
                 57778888887777776665 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.4
     Oleosin  37 llvlfSPvlvPaaiviaLavagf 59 
                 ++ ++ Pvl P+ i++  +v+ +
  KIR65799.1 229 FFKVVFPVLRPINIIVL-VVTVI 250
                 55566799999998765.45555 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 1.1
     Oleosin  19 LsGltLagtvigLav 33 
                 L+ l+L+ +++ ++v
  KIR65799.1 293 LATLMLVVSLVFITV 307
                 555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2197.32
//
Query:       KIR65800.1  [L=443]
Description: sugar ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-20   72.7  12.3    5.5e-20   72.3  12.3    1.2  1  SBP_bac_8   Bacterial extracellular solute-binding protein
    4.3e-19   69.6  15.9    5.9e-19   69.2  15.9    1.1  1  SBP_bac_1   Bacterial extracellular solute-binding protein
    0.00014   21.4   2.7     0.0036   16.8   2.6    2.5  1  SBP_bac_6   Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
        2.2    8.3   9.3        4.4    7.3   9.3    1.5  1  TAT_signal  TAT (twin-arginine translocation) pathway signal 


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3  12.3   1.2e-23   5.5e-20       2     253 ..      78     357 ..      77     385 .. 0.76

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 1.2e-23
                 HHHHHHHH-TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGS.TTHHH-HHHHHTT..--TS.----EEEEEEE-EE CS
   SBP_bac_8   2 lakefekktgvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdl.dnlddltdalaav..gydgklygvPyasetpyvl 97 
                 +++ f+ + gv+v + t++ n+ ++++++ l+ g+ +d+  +w++++ ++ +a++gl  d+sd+  +l +++da++++  g dgk y vP  ++ p+++
  KIR65800.1  78 VMAGFQTASGVEVAINTVDHNTFQENINNYLQ-GKPDDV-YTWFAGYRMRFFAAKGLAGDVSDVwGKLSGYSDAFKKAstGDDGKQYFVPASYY-PWAM 173
                 56779999*********************995.886665.79**********************999****99777776566********8888.79** PP

                 EEEHHHHHHS...---BHHHHHHHHHHHHHH-..........SEGG---GGG.GGGTHHETTEE---H.........HHH.HHHHHHHHHHHHTT-EE. CS
   SBP_bac_8  98 iynkdlleka..edpktwdellaaakklkgkf..........glpdpasgwl.qaallakdgksldddg.......gkdglkealellkklkdngkty. 175
                 +y+k+++++   ++pkt+del+a+ +++k+            g+p+   g++ +  l + +g+++  d        ++d++k++++ ++ l +  +   
  KIR65800.1 174 FYRKSVWQQRgyQVPKTLDELNALGAQMKKDGlnpiafgdkdGWPA--MGTFdILNLRI-NGYQFHVDLmagkeawTSDKVKKVFDTWAGLLPLHQADs 269
                 ********98899***********9999633345655555555543..33331223333.555553333354444556778***********7777444 PP

                 ..-S..--SSTTTTTSBSEEEE-TTHHHHHH-T.TTSEEEE.--.......S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHH CS
   SBP_bac_8 176 ..dtgadavsefanGevaftingswdiaaaqka.gkklgai.vp.......kqgsfaggkglavpknaknedlaAldFlkwltspenqa 253
                    t+ +a + +++++  +++ g    +++ ++  ++l +  +p       ++++ a ++g+++  + k e+  A+++l++l s+++  
  KIR65800.1 270 lgRTWQEAAQSLQQKKSGMYLLGLFVGQQFSNDeQDDLDFFtFPevdpaigAKALDAPIDGYMMARKPKSEA-NAKKLLEYLGSKDAAD 357
                 556999999************988777777744267888876886555433233334444466666666666.5**********99865 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2  15.9   1.3e-22   5.9e-19      12     314 ..      76     356 ..      65     357 .. 0.82

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 1.3e-22
                 HHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEE.CGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCEEE... CS
   SBP_bac_1  12 alvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviav.dndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkildskv... 106
                 a v++ f+    g++V i++v+ +++++++   +++   + Dv ++ ++++++ +a +gl+ ++++++++  ++   da++k+s           +   
  KIR65800.1  76 AKVMAGFQT-ASGVEVAINTVDHNTFQENINNYLQGKP-D-DVYTWfAGYRMRFFAAKGLAGDVSDVWGKLSGYS--DAFKKAST----------Gddg 159
                 444466744.79****************6666666555.6.*****************************95444..45555432..........2334 PP

                 .ES.EEEEE.EEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT....HHCSHHHHSHHH CS
   SBP_bac_1 107 .ly.vPlya.argliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgg....gldnpegvtaat 198
                  +y vP    +++++Y+k+++ + g ++p+t del +++  +k++g +p  +a+g  +++ a+ ++  l +  +g+ f+ d +    +       ++ +
  KIR65800.1 160 kQYfVPASYyPWAMFYRKSVWQQRGYQVPKTLDELNALGAQMKKDGLNP--IAFGDKDGWPAMGTFDILNLRINGYQFHVDLMagkeA-------WTSD 249
                 7899****66***************************************..999999999999999999999999***9999863331.......3444 PP

                 HHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCST CS
   SBP_bac_1 199 ylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgskn 297
                  ++k ++++     l ++++++ ++++a++ +++ + +m++ gl+  ++  + ++   + ++ +++++ +g+ +l             +g+++  + k 
  KIR65800.1 250 KVKKVFDTWAGLLPLHQADSLGRTWQEAAQSLQQKKSGMYLLGLFVGQQFSNDEQDDLDFFTFPEVDPAIGAKALD---------APIDGYMMARKPKS 339
                 55555555555557999*****************************888888888888888888887777777763.........38899999999999 PP

                 HHHHHHHHHHHTSHHHH CS
   SBP_bac_1 298 peaAkkFldfllspeaq 314
                 ++ Akk+l++l s++a+
  KIR65800.1 340 EANAKKLLEYLGSKDAA 356
                 999**********9985 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   2.6     8e-07    0.0036      31     213 ..     142     363 ..     112     385 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8e-07
   SBP_bac_6  31 nlpnvnkdfaeeglkdp.dgkyypygvgplvlavnkdrlkgrpv..PksWaDL..ldPeykg....kvalpgnng...sdlfealllalyk........ 109
                 +l  +++ f+++ + d+ + +++p ++ p+ + + k+++ +r +  Pk+ ++L  l  + k+     +a+ +++g    ++f +l l ++         
  KIR65800.1 142 KLSGYSDAFKKASTGDDgKQYFVPASYYPWAMFYRKSVWQQRGYqvPKTLDELnaLGAQMKKdglnPIAFGDKDGwpaMGTFDILNLRINGyqfhvdlm 240
                 45678889999999999899999*******************9999*******6546777765666899999999966666666666666599****** PP

   SBP_bac_6 110 ....dfg.edgvkkllrnlkanlhpaq.......mvkaagslesgepavsvvpyffadilpekkkgk....nlkvvwPedGalv...spifmlvkkg.k 188
                         +d+vkk +  ++++l   q        ++aa+sl++++  ++++  f +++  ++++ +     +  v P  Ga +    ++ +++ ++ k
  KIR65800.1 241 agkeA-WtSDKVKKVFDTWAGLLPLHQadslgrtWQEAAQSLQQKKSGMYLLGLFVGQQFSNDEQDDldffTFPEVDPAIGAKAldaPIDGYMMARKpK 338
                 **952.4477777777777777655555579999899**************************988899998888888888754221344444444446 PP

   SBP_bac_6 189 kkelakafidfllspevqailakag 213
                  ++ ak+++++l+s++++ + +k+ 
  KIR65800.1 339 SEANAKKLLEYLGSKDAADVTVKND 363
                 ******************9998886 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   9.3   0.00098       4.4       4      26 .]      24      46 ..      21      46 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00098
  TAT_signal  4 RRdFLKgsAAaaAAaalggcaaa 26
                RR++L g+A+++A++++g +a++
  KIR65800.1 24 RRSLLAGAAGTGALLGTGLLAGC 46
                ******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3059.79
//
Query:       KIR65801.1  [L=678]
Description: beta-galactosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.1e-147  489.8   0.0   7.4e-147  489.6   0.0    1.1  1  Glyco_hydro_42   Beta-galactosidase
      8e-61  205.1   0.1    1.6e-60  204.2   0.1    1.5  1  Glyco_hydro_42M  Beta-galactosidase trimerisation domain
    9.7e-13   47.6   0.0    2.1e-12   46.6   0.0    1.6  1  Glyco_hydro_42C  Beta-galactosidase C-terminal domain
    0.00015   21.5   0.0     0.0013   18.4   0.0    2.1  2  Glyco_hydro_35   Glycosyl hydrolases family 35
    0.00021   20.4   0.1      0.001   18.1   0.0    2.1  3  Glyco_hydro_14   Glycosyl hydrolase family 14
  ------ inclusion threshold ------
      0.021   13.9   0.0      0.045   12.9   0.0    1.4  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom
      0.024   14.6   0.0        5.2    7.1   0.0    2.4  2  DUF4434          Domain of unknown function (DUF4434)
      0.082   13.4   0.1       0.42   11.1   0.1    2.4  1  DUF4350          Domain of unknown function (DUF4350)
      0.095   11.6   0.0       0.14   11.0   0.0    1.1  1  NiFeSe_Hases     Nickel-dependent hydrogenase
       0.57   10.5   8.9        0.2   12.0   0.3    3.8  4  DUF3459          Domain of unknown function (DUF3459)


Domain annotation for each model (and alignments):
>> Glyco_hydro_42  Beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  489.6   0.0  4.1e-150  7.4e-147       1     373 [.      19     388 ..      19     389 .. 0.99

  Alignments for each domain:
  == domain 1  score: 489.6 bits;  conditional E-value: 4.1e-150
                     E--GGGS-CCHHHHHHHHHHHHT--EEEE-TT-HHHH-SBTTB---HHHHHHHHHHHCTT-EEEEE-STTS--HHHHHH-GGGS-B-TTS-B--S CS
  Glyco_hydro_42   1 dYnPeqwpeeaweedirlmkeagvnvvrlgefaWaklePeegkydFewLdevldllekagikviLatptaapPaWlvkkyPeilavdadgskrkf 95 
                     dYnPeqwpe++w ed++lm++agvn+v++g+f+Wa leP+ g+ydF+wLd++ld+l++ gi+v Lat+ta+pP Wl++++Pe+l++ adg++ + 
      KIR65801.1  19 DYNPEQWPEQTWAEDVELMRRAGVNLVSVGIFSWALLEPTPGRYDFGWLDRALDTLHAGGISVDLATATASPPPWLAHAHPETLPRRADGTVLWP 113
                     8********************************************************************************************** PP

                     SSS----TT-HHHHHHHHHHHHHHHHHHTT-TTEEEEE-SSSTTTT..S--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S CS
  Glyco_hydro_42  96 gsrqhiclsspvyrekvakivealaerYkdhpavilwhidnEygch..ecycetceeaFrkwlkekYgtidelneawgtafWsqeysdfeeielP 188
                     g+rq +c+sspv+re   ++vea+a+rY+dhpav++wh++nE+gch  +cyc+  + aFr wl+e+Yg++ +lneawgt fWsq+y d+ ei++P
      KIR65801.1 114 GGRQAYCPSSPVFRERSLALVEAVATRYADHPAVVMWHVSNELGCHnvHCYCDVSAAAFRGWLRERYGDLAALNEAWGTLFWSQRYGDWAEINPP 208
                     *********************************************************************************************** PP

                     -S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT.--SS-HHHHGGGSSSEEEEE-HH---HHHHH-TTHHHHHHHHHH CS
  Glyco_hydro_42 189 selseeenpskildykrFssdqilefvkaeaeilreyspdipvttnfmgsafkdldyvklakeldivswdsYptrskeekeekldelalkhdlyr 283
                     + +++++np+++ld+ rFssd+    ++ae++ l++++ ++pvttnfm  + k++dy+ +a+++d+v  d+Y t     + +++  lal++d +r
      KIR65801.1 209 RAAPTFANPTQQLDFLRFSSDEQRAQLRAERDLLKRLV-AQPVTTNFMVGMSKHMDYHSWAADVDLVATDHYLT---AADPQSHVGLALAADHTR 299
                     **************************************.88*********************************...788889999********* PP

                     HHTTT-.EEEEEE--S--SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-SB--SSSTTTTS--SB-TTS.-B-HHHHHHHHHHHHHHT CS
  Glyco_hydro_42 284 slkkgkpflvmEqqpsavnwapvnkakapGavrlwslqavAhGadavlyFqwrqsrggsEkfhsgvlehvgsektrvfrevkevgeelkk 373
                     +++ g p+l+mE+++savnw+p n+akapG++r++sl++vA+Gad vl+Fqwr sr+g+Ek+hs++++h+g ++t+vfrev+++g +lk+
      KIR65801.1 300 GVAGGAPWLLMEHSTSAVNWQPRNVAKAPGQLRRNSLAHVARGADGVLFFQWRASRAGAEKYHSALVPHAG-ADTKVFREVCRLGADLKA 388
                     ***********************************************************************.**************9997 PP

>> Glyco_hydro_42M  Beta-galactosidase trimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.2   0.1   8.8e-64   1.6e-60       1     206 [.     399     600 ..     399     601 .. 0.98

  Alignments for each domain:
  == domain 1  score: 204.2 bits;  conditional E-value: 8.8e-64
  Glyco_hydro_42M   1 aevAivfdweskwaiesqegpssrdldyrsevrkyYrallelgvpvDvvseeadlsgYklvvaPtlylvseelvkkleafvenGGtlvltylsG 94 
                      a+vAi+fd+e++w +e +++ps  d+ y +++++ + al+++gv++D+v+++ dls+Y+lv++Ptlylv+++ +++l+ +v++GGt ++ty+sG
       KIR65801.1 399 ADVAILFDYEAWWGVELDSHPS-VDVTYADRLAALHGALWRAGVTADLVHPSTDLSRYRLVLVPTLYLVRDADAEALHGWVAAGGTALVTYFSG 491
                      89********************.*********************************************************************** PP

  Glyco_hydro_42M  95 vvdendrihlggvpgpLrellGikveeldtlpeeeevevsaegktyearlwseilepetaevlatyatdfyagtpAvtrnnygkGkaiYvgsrl 188
                      +vde+d++ lgg+pg++rellGi++ee+ +l e+e+v+++ +g++  a+ w+e+l+p +a+v+a ya++   g pA+tr+++g G a+Y g+rl
       KIR65801.1 492 IVDEHDHVRLGGYPGAFRELLGIRTEEFFPLREGERVTLD-DGSA--ADVWTEWLHPAGAQVVAAYADGPLPGVPALTRHAVGAGAAWYAGTRL 582
                      **************************************99.5666..899******************************************** PP

  Glyco_hydro_42M 189 eddlldaLlkklleeael 206
                      +d+  d L+++ll+ea++
       KIR65801.1 583 DDAATDRLVARLLAEAGV 600
                      ***************997 PP

>> Glyco_hydro_42C  Beta-galactosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.2e-15   2.1e-12       1      58 []     609     664 ..     609     664 .. 0.98

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1.2e-15
                      TEEEEE....ETTEEEEEE-SSS-EE----TT-EEEES-......SEE-TTEEEEEE- CS
  Glyco_hydro_42C   1 gvevqrRengegrylFvlNfsneevtvtlpasagdlltgelaeggvtlePygvaVlre 58 
                      gvev rR++++  +lFv+N+++ + ++   a++++ll g +++g++++ P +vaV+re
       KIR65801.1 609 GVEVVRRRGDGRSWLFVVNHTDRPARI--AATGTELLAGARCAGELEVAPGEVAVVRE 664
                      8*************************9..99*************************97 PP

>> Glyco_hydro_35  Glycosyl hydrolases family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   7.4e-07    0.0013      11      59 ..      15      64 ..      11      76 .. 0.89
   2 ?    0.3   0.0      0.24   4.3e+02     156     244 ..     231     324 ..     224     344 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.4e-07
                    EEEEEE-GGGS-GGGHHHHHHHHHHCT-SEEEEE--.HHHH-SCTTB--- CS
  Glyco_hydro_35 11 llsGeihyfRlppelWedvlekvkalGlnaietYve.Wnlhepkegkydf 59
                    +++++  +   p+++W + +e ++ +G+n +++ ++ W+l ep++g+ydf
      KIR65801.1 15 YYGADYNPEQWPEQTWAEDVELMRRAGVNLVSVGIFsWALLEPTPGRYDF 64
                    667777888899*********************8755************9 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.24
                     -HHHHHHHHHHHCCCT-SSCBEEECESTTTCCCTTSSTTT.SCEEEEEECTTS.THHHHHHH......HHH-TTS--EEEEEESS---BTTS--H CS
  Glyco_hydro_35 156 dkaylralakalkeklaekallftadvpseevaekgtlpeedilatvgfgsdakakeafkll......kefspekPlvvsefwtgwfdewgekka 244
                     ++a lra+++ lk  +a++++++ + + s+++  ++ + + d++at+ + + a++++ + l       + ++   P +++e  t++ + w+ +++
      KIR65801.1 231 QRAQLRAERDLLKRLVAQPVTTNFMVGMSKHMDYHSWAADVDLVATDHYLTAADPQSHVGLAlaadhtRGVAGGAPWLLMEHSTSAVN-WQPRNV 324
                     45556789999999999*9999999999999999999999999999999999998555544433333366667779999998887764.655544 PP

>> Glyco_hydro_14  Glycosyl hydrolase family 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.4   2.5e+03      17      61 ..      29      73 ..      23      81 .. 0.72
   2 !   18.1   0.0   5.8e-07     0.001     178     228 ..     160     215 ..     137     271 .. 0.79
   3 ?   -2.4   0.0      0.94   1.7e+03     223     264 ..     468     508 ..     462     516 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.4
  Glyco_hydro_14 17 alekdlralkqnGveaitvdvw.wGlvekdGdqqfdfsyykelaqa 61
                    +  +d++ ++ +Gv+ + v ++ w l+e   + ++df   ++  ++
      KIR65801.1 29 TWAEDVELMRRAGVNLVSVGIFsWALLEP-TPGRYDFGWLDRALDT 73
                    66778899999******999765888875.4666777666666555 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 5.8e-07
  Glyco_hydro_14 178 kfqayteyaksslrayvedkygsldkvnkawGtklisea.....ainlPedgeqfl 228
                     +  +y ++  +++r +++++yg l  +n+awGt   s+      +in+P  + +f 
      KIR65801.1 160 NVHCYCDVSAAAFRGWLRERYGDLAALNEAWGTLFWSQRygdwaEINPPRAAPTFA 215
                     678******************************99887655555789998888775 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.94
  Glyco_hydro_14 223 dgeqflrnGtynseyGkdflewyqgvleehldligeaakkaf 264
                     d++    +G + ++ G   + +++g+++eh ++ +    +af
      KIR65801.1 468 DADAEALHG-WVAAGGTALVTYFSGIVDEHDHVRLGGYPGAF 508
                     666666677.99999***************987665555555 PP

>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.5e-05     0.045     103     137 ..     123     157 ..     109     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
                      SGGGHHHHHHHHHHHHHHHTT-TTEEEEEEEESSC CS
  Glyco_hydro_2_C 103 npewlkavldrieelverdkNHpsviiWSlgNEsg 137
                       p + +  l  +e + +r   Hp+v++W ++NE g
       KIR65801.1 123 SPVFRERSLALVEAVATRYADHPAVVMWHVSNELG 157
                      56667777888999999****************74 PP

>> DUF4434  Domain of unknown function (DUF4434)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0029       5.2      12      37 ..      19      45 ..      12      53 .. 0.83
   2 ?    4.8   0.0     0.014        25     107     137 ..     132     162 ..     122     184 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0029
                SS.-----HHHHHHHHHHHHHTT--EE CS
     DUF4434 12 dl.eqnltdkqWkeklrelkelgmntl 37
                d   ++++++ W+e+++ ++++g+n +
  KIR65801.1 19 DYnPEQWPEQTWAEDVELMRRAGVNLV 45
                443479*****************9976 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.014
                 HHHHHHHHHTTT-TTEEEEEE----SS--TT CS
     DUF4434 107 rvaeelakkYghhkafyGWYiseEidnanke 137
                  ++e +a +Y  h+a   W +s+E++  n +
  KIR65801.1 132 ALVEAVATRYADHPAVVMWHVSNELGCHNVH 162
                 47889999****************9877755 PP

>> DUF4350  Domain of unknown function (DUF4350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00023      0.42      39      67 ..     457     486 ..     423     488 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
     DUF4350  39 lvvapdlrlte.eelaallewvarGntlvl 67 
                 lv+ p+l+l   ++++al  wva+G+t ++
  KIR65801.1 457 LVLVPTLYLVRdADAEALHGWVAAGGTALV 486
                 677788887777***************987 PP

>> NiFeSe_Hases  Nickel-dependent hydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.7e-05      0.14     103     163 ..     228     289 ..     200     304 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.7e-05
                   SB-SHHHHHHHHHHHHHHHHTT--GGGTT-TTT-TT--.S-HHHHHHHHHHHHHHHHHHHHH CS
  NiFeSe_Hases 103 pkssaeelkavqeklkkfvesgqlgifangYwghpayk.lppeanliavahYLeaLelqrka 163
                   +++++++l+a ++ lk++v++  +  f+ g  +h +y+   ++++l+a+ hYL a + q ++
    KIR65801.1 228 SDEQRAQLRAERDLLKRLVAQPVTTNFMVGMSKHMDYHsWAADVDLVATDHYLTAADPQSHV 289
                   46778899999**************************9899**************9988765 PP

>> DUF3459  Domain of unknown function (DUF3459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       9.8   1.7e+04      59      74 ..     187     200 ..     181     211 .. 0.66
   2 ?   -2.4   0.1       3.6   6.4e+03      22      40 ..     336     354 ..     330     360 .. 0.73
   3 ?    1.7   0.0      0.18   3.2e+02       2      39 ..     508     544 ..     507     554 .. 0.75
   4 ?   12.0   0.3   0.00011       0.2      19      88 ..     596     659 ..     589     662 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 9.8
                 -SS---SEEEEECT-- CS
     DUF3459  59 ppegaagkllfsseaa 74 
                 +  +a+g+l +s + +
  KIR65801.1 187 N--EAWGTLFWSQRYG 200
                 4..7788888887654 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.6
                 GEEEEEEECTCEEEEEEEE CS
     DUF3459  22 glevavlgdgallvrwrlg 40 
                  ++va+ +dg l+ +wr+ 
  KIR65801.1 336 LAHVARGADGVLFFQWRAS 354
                 4678888999999999973 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.18
                 HHHHHHHHHHH..CCCTT--CGGEEEEEEECTCEEEEEEE CS
     DUF3459   2 yrdLLaLRree..PaLadarrgglevavlgdgallvrwrl 39 
                  r+LL +R ee  P L++ +r +l+    +++++++ w  
  KIR65801.1 508 FRELLGIRTEEffP-LREGERVTLD--DGSAADVWTEWLH 544
                 59**********99.9999777777..4667777777765 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 0.00011
                 -CGGEEEEEEECTCEEEEEEEETTEEEEEEEE-SSCGCCS-SS---SEEEEECT--S....SSEE-TTEE CS
     DUF3459  19 rrgglevavlgdgallvrwrlgdgrllrllaNLgdepvtlppegaagkllfsseaaraggdagrlppesv 88 
                 +++g++ a++++  + v++r gdgr +++++N  d p++++  +++ +ll  ++ a     + +++p +v
  KIR65801.1 596 AEAGVRPAADAPPGVEVVRRRGDGRSWLFVVNHTDRPARIA--ATGTELLAGARCAG----ELEVAPGEV 659
                 567899999*******************************9..66666666554433....555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4637.71
//
Query:       KIR65802.1  [L=257]
Description: cytochrome C [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-49  167.4   0.1    2.9e-49  167.1   0.1    1.1  1  DeoRC      DeoR C terminal sensor domain
    2.3e-19   68.9   0.3    3.9e-19   68.1   0.3    1.4  1  HTH_DeoR   DeoR-like helix-turn-helix domain
    1.3e-06   28.3   0.1    2.3e-06   27.4   0.1    1.4  1  HTH_11     HTH domain
    1.1e-05   25.2   0.5    5.6e-05   23.0   0.0    2.1  2  MarR       MarR family
    3.5e-05   23.4   0.2    8.8e-05   22.1   0.2    1.7  1  GntR       Bacterial regulatory proteins, gntR family
    7.1e-05   22.6   0.6    0.00026   20.8   0.6    1.9  1  MarR_2     MarR family
     0.0048   17.2   0.1       0.22   11.9   0.0    2.4  2  Rrf2       Transcriptional regulator
  ------ inclusion threshold ------
       0.01   15.9   2.0      0.018   15.1   0.2    2.2  2  HTH_20     Helix-turn-helix domain
      0.016   15.7   0.1      0.037   14.5   0.1    1.6  1  HTH_27     Winged helix DNA-binding domain
      0.029   13.7   0.1      0.046   13.1   0.1    1.5  1  CoA_trans  Coenzyme A transferase
      0.037   13.8   2.2       0.04   13.7   0.2    2.1  2  HTH_IclR   IclR helix-turn-helix domain
      0.062   12.9   0.1       0.37   10.4   0.1    2.2  2  HTH_24     Winged helix-turn-helix DNA-binding
      0.069   13.5   0.0       0.14   12.5   0.0    1.6  1  FaeA       FaeA-like protein
      0.079   12.8   0.0       0.13   12.1   0.0    1.4  1  HTH_5      Bacterial regulatory protein, arsR family
      0.087   12.9   0.0       0.24   11.5   0.0    1.7  1  HemN_C     HemN C-terminal domain
       0.11   12.5   0.0       0.19   11.6   0.0    1.3  1  TrmB       Sugar-specific transcriptional regulator TrmB
       0.17   12.0   0.3        1.2    9.2   0.0    2.2  2  DUF3489    Protein of unknown function (DUF3489)
       0.49   10.3   3.9       0.19   11.5   0.3    2.2  2  HTH_23     Homeodomain-like domain


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.1   0.1   2.9e-52   2.9e-49       2     159 ..      76     234 ..      75     235 .. 0.97

  Alignments for each domain:
  == domain 1  score: 167.1 bits;  conditional E-value: 2.9e-52
       DeoRC   2 naeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLseke..dikvillGGevrkkseslvgplaeealrqfnvdkafl 98 
                 + +eKr+IA++Aa+l+e+g++i+l aGtTt++la  La+ + ltvvTns++va++L + +  d +v+l+GG +r+ s++l+gp+ae a++++nvd++fl
  KIR65802.1  76 QRDEKRAIAERAATLVEPGMAIALSAGTTTAALATLLADVRGLTVVTNSIPVADALYADPraDRTVVLTGG-IRTPSDALTGPVAEAAVSTLNVDVLFL 173
                 679*******************************************************9976778888888.*************************** PP

       DeoRC  99 gangidaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitD 159
                 g++g+++++g+tt+++ ea ++r+l++aarr ++laD++K++  + ++ia+l + d+litD
  KIR65802.1 174 GVHGMSPRTGFTTPNLLEAGINRRLVHAARRLVVLADHTKWETIGIATIAPLADADVLITD 234
                 ************************************************************9 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.3   3.9e-22   3.9e-19       1      53 [.       6      58 ..       6      61 .. 0.97

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 3.9e-22
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavs 53
                R+ +ilel++q+g ++v  lv ++gvS++TiRRDL+ L+e gl+ ++hGGa++
  KIR65802.1  6 RQSAILELIRQRGGVRVSHLVTRFGVSDMTIRRDLEALAERGLIDKVHGGATL 58
                99*************************************************87 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   2.3e-09   2.3e-06       1      49 [.       6      52 ..       6      56 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2.3e-09
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgvpIese 49
                R+++ilel+ ++rg +  + L  +++vS +t+rrd++aL e g  I+++
  KIR65802.1  6 RQSAILELI-RQRGGVRVSHLVTRFGVSDMTIRRDLEALAERG-LIDKV 52
                8999*****.88888************************9999.45444 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   5.6e-08   5.6e-05       4      50 ..       6      52 ..       4      54 .. 0.94
   2 ?   -0.1   0.1      0.92   9.2e+02      25      42 ..      95     112 ..      87     114 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 5.6e-08
                HHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        MarR  4 tqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRs 50
                 q  iL++++++g+ +vs L  ++gvs +t+ r l +L ++Gli++ 
  KIR65802.1  6 RQSAILELIRQRGGVRVSHLVTRFGVSDMTIRRDLEALAERGLIDKV 52
                6889****************************************975 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.92
                 HHHTS-HHHHHHHHHHHH CS
        MarR  25 kklgvskstvtrvldrLe 42 
                 +++ +s +t+t +l +L 
  KIR65802.1  95 MAIALSAGTTTAALATLL 112
                 67789999***9999996 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.2   8.9e-08   8.8e-05      26      62 ..      21      57 ..      11      58 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 8.9e-08
                -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEE CS
        GntR 26 sereLaaefgVsrttvReALrrLeaeglverrqgrGt 62
                ++++L+++fgVs +t+R+ L  L+++gl+   +g++t
  KIR65802.1 21 RVSHLVTRFGVSDMTIRRDLEALAERGLIDKVHGGAT 57
                6899**************************9999988 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.6   2.6e-07   0.00026       7      55 ..       7      53 ..       4      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.6e-07
                HHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2  7 qarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrp 55
                q  +L  ++ r+g  ++v+ l+ r+g+s  ++ r l+ L ++GL+ ++ 
  KIR65802.1  7 QSAILELIRQRGG--VRVSHLVTRFGVSDMTIRRDLEALAERGLIDKVH 53
                7889*********..******************************9875 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00022      0.22      17      68 ..      13      59 ..       7      64 .. 0.80
   2 ?    2.6   0.0      0.17   1.7e+02       4      33 ..     195     224 ..     193     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00022
                HHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEES CS
        Rrf2 17 LakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLa 68
                L ++++   v+++++ +r+++s+  +++ l+ L++ gl+  v G   G++La
  KIR65802.1 13 LIRQRG--GVRVSHLVTRFGVSDMTIRRDLEALAERGLIDKVHG---GATLA 59
                444444..49******************************9865...56666 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.17
                 -HHHHHHHHHHHHHHHSSTCC-B-HHHHHH CS
        Rrf2   4 sskteyalhallyLakeeeeepvsseeiae 33 
                 ++++  a + l++La + + e++ +++ia 
  KIR65802.1 195 NRRLVHAARRLVVLADHTKWETIGIATIAP 224
                 677888999************9**999995 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.2   1.8e-05     0.018      12      57 ..       7      52 ..       2      55 .. 0.91
   2 ?   -1.7   0.1       3.1   3.1e+03      22      35 ..     100     114 ..      96     122 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.8e-05
                HHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 12 RrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevv 57
                + +il ++++++g+ +s l  r+++s+ t+++ L++L+e gL++ v
  KIR65802.1  7 QSAILELIRQRGGVRVSHLVTRFGVSDMTIRRDLEALAERGLIDKV 52
                678999*************************************987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.1
                 CTTB-HHHHHHHH.T CS
      HTH_20  22 aegltaselaerl.d 35 
                  +g t ++la +l d
  KIR65802.1 100 SAGTTTAALATLLaD 114
                 678899999998854 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   3.7e-05     0.037       3      51 ..       5      52 ..       3      57 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.7e-05
      HTH_27  3 rqqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvert 51
                + q+++L+lir +r++++ + l+ r  v+d +i   l++L e+GL+ + 
  KIR65802.1  5 QRQSAILELIR-QRGGVRVSHLVTRFGVSDMTIRRDLEALAERGLIDKV 52
                6799*******.**********************************765 PP

>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   4.6e-05     0.046       3      70 ..      82     142 ..      80     213 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.6e-05
                 HHHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHTTTSEEEEESTTTEECCHHHHHTTTEEEEEE CS
   CoA_trans   3 taaeavakeikdGmtvavGGFgligiPealiaalarsgvkdltviiseagvlglgplllngsvkkvia 70 
                  +ae++a+ ++ Gm +a++    +g+ +a+ a l+ + v++ltv+++   v  +++l ++ + ++ ++
  KIR65802.1  82 AIAERAATLVEPGMAIALS----AGTTTAALATLLAD-VRGLTVVTNSIPV--ADALYADPRADRTVV 142
                 57899999***********....99998888888887.9********9998..788887777777665 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2     4e-05      0.04       7      50 ..       9      51 ..       5      53 .. 0.90
   2 ?   -1.7   0.1       2.6   2.6e+03      28      42 ..      97     111 ..      84     113 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4e-05
                HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                aiL++++++++ +++s l  r+g++  t +R L  L e+G++ +
  KIR65802.1  9 AILELIRQRGG-VRVSHLVTRFGVSDMTIRRDLEALAERGLIDK 51
                79999988888.8****************************875 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.6
                 HTS-HHHHHHHHHHH CS
    HTH_IclR  28 tglpkStvhRlLqtL 42 
                 ++l+  t+   L+tL
  KIR65802.1  97 IALSAGTTTAALATL 111
                 567777777777777 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00037      0.37       7      47 ..       9      49 ..       5      50 .. 0.95
   2 ?   -0.9   0.0       1.2   1.2e+03      27      42 ..      97     112 ..      96     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00037
      HTH_24  7 kILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                +ILel+++ ++   + L  r g+S  t++r l+ L e GlI
  KIR65802.1  9 AILELIRQRGGVRVSHLVTRFGVSDMTIRRDLEALAERGLI 49
                7***************************************9 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.2
      HTH_24  27 lglSpstvnrrlkrLe 42 
                 + lS +t+++ l  L 
  KIR65802.1  97 IALSAGTTTAALATLL 112
                 5699999999988775 PP

>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00014      0.14       3      49 ..       8      53 ..       6      60 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00014
                HHHHHHHHH.S----HHHHHHHHTS-HHHHHHHHHHHHHHSSEEEE- CS
        FaeA  3 eeIleylnsikapckTreiAdalglsaYQaRyYLeqLekegkikrsp 49
                  Ile + + +++++ + +   +g+s+  +R  Le L   g i ++ 
  KIR65802.1  8 SAILELIRQ-RGGVRVSHLVTRFGVSDMTIRRDLEALAERGLIDKVH 53
                579999999.*********************************9985 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.13       4      47 .]       7      51 ..       4      51 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                HHHHHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
       HTH_5  4 RlkILklLae.gelcvcelaeelglsqstvShHLkkLreaGLVek 47
                ++ IL l ++ g   v+ l+  +g+s  t+++ L +L e GL++k
  KIR65802.1  7 QSAILELIRQrGGVRVSHLVTRFGVSDMTIRRDLEALAERGLIDK 51
                67799999998889****************************986 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00024      0.24      10      52 ..       9      50 ..       3      54 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00024
      HemN_C 10 eiilgLRlreGldlaafeqrfgldleellaaaleklqeqGLLe 52
                +i++ +R r G+  +++ +rfg++   + +  le l e+GL+ 
  KIR65802.1  9 AILELIRQRGGVRVSHLVTRFGVS-DMTIRRDLEALAERGLID 50
                688899*****************9.4455888*********95 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00019      0.19      18      58 ..      14      55 ..       8      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
                H.HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 18 l.klgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                + ++g  +++ +  + gv+  ++ + L+ L ++Gl+++++g 
  KIR65802.1 14 IrQRGGVRVSHLVTRFGVSDMTIRRDLEALAERGLIDKVHGG 55
                45789999******************************9875 PP

>> DUF3489  Protein of unknown function (DUF3489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0012       1.2       7      40 ..       5      38 ..       2      52 .. 0.87
   2 ?   -0.1   0.1      0.97   9.6e+02       5      24 ..     101     120 ..      98     125 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0012
     DUF3489  7 tKqarlialLrrpeGatiaeimeatgWqahtvRg 40
                 +q ++++l+r+++G+ + ++++++g    t+R 
  KIR65802.1  5 QRQSAILELIRQRGGVRVSHLVTRFGVSDMTIRR 38
                57999*********************99999995 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.97
     DUF3489   5 agtKqarlialLrrpeGati 24 
                 agt +a+l +lL    G t+
  KIR65802.1 101 AGTTTAALATLLADVRGLTV 120
                 55666777777777777765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   0.00019      0.19       5      45 ..       4      47 ..       2      51 .. 0.80
   2 ?   -2.5   0.3       5.1   5.1e+03      14      25 ..      74      85 ..      70      86 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
      HTH_23  5 reRlrillllae...GlsvreIAreLgvsrrTvyrwlkryreeG 45
                ++R++++l l +   G +v+   +++gvs +T++r l++ +e G
  KIR65802.1  4 QQRQSAILELIRqrgGVRVSHLVTRFGVSDMTIRRDLEALAERG 47
                7888866666655*********************9666666666 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.1
      HTH_23 14 laeGlsvreIAr 25
                 ++++ +r+IA+
  KIR65802.1 74 IRQRDEKRAIAE 85
                567888999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1674.31
//
Query:       KIR65803.1  [L=131]
Description: hypothetical protein TK50_10815 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 919.01
//
Query:       KIR65804.1  [L=208]
Description: GDSL family lipase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-24   85.7   1.4    5.7e-24   85.5   1.4    1.0  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
    7.5e-06   26.0   0.0    1.3e-05   25.2   0.0    1.5  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   1.4   6.4e-28   5.7e-24       1     178 [.      11     196 ..      11     197 .. 0.78

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 6.4e-28
                    EEESHHHH.TCTTB..CCHCHHCCCCCCCHHHTT...-EEEEE.EEHCCH-H..HHHHHHHH.CTGGG-TSEEEEE--CCCCCTT--HHHHHHH.. CS
  Lipase_GDSL_2   1 alGDSiTa.Gygad..gggrsypaylarllaarl...gldvvnnlgvsGattallrllerlr.dllrlkpdlvtiliGtNDlgrgvpaaaaaand. 88 
                    ++GDSiT+ G  +    +g++y +++ + + ar    gl++vn +g++G+t+  ++l+ r++ d+ + +pd++ +++G+ND++rg ++++ a++  
     KIR65804.1  11 FIGDSITDcGRRDHaaPYGDGYMSLVRAFVDARHpqlGLTWVN-RGIGGDTV--RDLAARWEaDAVAERPDWLCVMVGINDIWRGFSPGREAEAVp 103
                    79******87777799777777777666666666777******.********..************************************999999 PP

                    .......HHHHHHHHCCC...GEEECEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHHCT-EEE-H....HHHHHHCCCCCGGBBTTS.SSB-H CS
  Lipase_GDSL_2  89 ......nleelidalraaapgarilvlgplpptpeaaadarelnaviaaynealrevaaeegvpfvDl....hdaladsgerladlladdglHPna 174
                          +l++l++++ +   g+r++ + p+      ++  + ++a +++y++++++va++ +++ v +    +   +  + +++  +add++HP  
     KIR65804.1 104 ideyerTLRALLRRAVTT-TGCRLVLADPFLIEADVDE--P-QRAETDRYAAVVAAVAKDFDAVHVATqaafD---RVLAHSPSSRWADDRVHPGL 192
                    995555555555544444.6778884333333333333..3.478***************8888888864433...334455677899999***** PP

                    HHHH CS
  Lipase_GDSL_2 175 aGyr 178
                     G++
     KIR65804.1 193 PGHA 196
                    **98 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.5e-09   1.3e-05       1     199 [.       9     201 ..       9     202 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.5e-09
                  EEEEESHHHH..........TT.......THHHHHHHCCCCEECCCTTC.GCEEEEEEECTTHHHHHHHCCHECTTTECHHHHHCTTSEEEEE--CTC CS
                  xxxxxxxxxx..........xx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL   1 ivafGDSltd..........Gd.......gaatlntiqlktpknlnefdlaldrianignkgasdnelqqllnkyplkseqlkalhpdlviislGtND 81 
                  iv++GDS+td          Gd       ++  +   ql+ +              n g++g+ ++ l+ +       + ++ a++pd++ +++G ND
   KIR65804.1   9 IVFIGDSITDcgrrdhaapyGDgymslvrAFVDARHPQLGLTW------------VNRGIGGDTVRDLAARW------EADAVAERPDWLCVMVGIND 88 
                  8*********999999988855336666666666666666655............67789999999999999......99****************** PP

                  C.-EECSSCTTTCEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCHCTCCCCHCCHHHHHHHHHHHHHHHHHHHHHCTEEEECHHHHHHHTHCC CS
                  x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  82 s.nlgkkstdaakkeaeeyiknlreaikelkeegapkaivvlvsppglgpqeekdakklgekgnefvgeynqrlndlaekdgfavvDlydelqglsgi 178
                  +   ++   +a   +++ey + lr ++++       ++  vl  p  +          + e  +   + y+ ++ ++a++++ + v     + +    
   KIR65804.1  89 IwRGFSPGREAEAVPIDEYERTLRALLRRAV--TTTGCRLVLADPFLIEA-------DVDEPQRAETDRYAAVVAAVAKDFDAVHVATQAAFDRV--L 175
                  *9777888889999************99444..45677777777777777.......56666666666677777777775555555555544444..1 PP

                  GCHCH.....TSSSB-HHHHHHHHHH CS
                  xxxxx.....xxxxxxxxxxxxxxxx RF
  Lipase_GDSL 179 eqlka.....DglHpsekgyeklael 199
                  +++ +     D +Hp   g++ +a++
   KIR65804.1 176 AHSPSsrwadDRVHPGLPGHAVIADA 201
                  11111344546677777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1515.80
//
Query:       KIR65805.1  [L=607]
Description: hypothetical protein TK50_10835 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-13   50.4  15.7    1.7e-07   31.4   0.8    3.2  3  TPR_12    Tetratricopeptide repeat
    1.1e-05   25.1  14.5    7.5e-05   22.5   0.4    4.8  5  TPR_10    Tetratricopeptide repeat
    2.9e-05   23.6  10.2    4.7e-05   22.9   6.6    2.0  2  TPR_MalT  MalT-like TPR region
     0.0024   18.3   9.9      0.012   16.1   0.7    3.2  3  TPR_19    Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.44   11.5  27.5        1.1   10.3   0.6    5.7  5  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.6   0.00017      0.61      10      65 ..      12      67 ..       8      71 .. 0.91
   2 !   24.2   5.2   8.3e-09     3e-05       2      70 ..      46     114 ..      45     116 .. 0.94
   3 !   31.4   0.8   4.9e-11   1.7e-07       5      77 .]     133     205 ..     129     205 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00017
      TPR_12 10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAl 65
                a+ l  +g+++ A++ll  al  a   +++ +p++a++    +r++ alg++  A+
  KIR65805.1 12 AHQLVSAGDLAGAQQLLSDALSDADPRPDHASPELAEAAGLQARVLVALGEPHSAR 67
                5666779********************99999********************9997 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 8.3e-09
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlellee 70 
                 +a a+   a vl +lg+ + A+ +   a+++a+rl+G d p ++++  +L+ ++++ g y+ A +l+ +
  KIR65805.1  46 LAEAAGLQARVLVALGEPHSARGWAAFAYAAATRLHGRDDPRAVAAAATLAAVLHRVGSYARAARLYSD 114
                 57888889*********************************************************9965 PP

  == domain 3  score: 31.4 bits;  conditional E-value: 4.9e-11
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiaek 77 
                 a+  la+v++++g+++ A+e l+ a e++r+++G+ hp  +  l  Lg ++r  g++++ ++ l+ a +++++
  KIR65805.1 133 AHADLATVEYARGQCEVARERLQDAWELHREVYGDGHPSGIKMLARLGSMQRDCGEFADSHDTLTLARELCRQ 205
                 4436*****************************************************************9986 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.2   7.8e+03      16      30 ..      19      33 ..      17      34 .. 0.80
   2 ?    2.6   0.3     0.037   1.3e+02       9      41 ..      54      86 ..      54      87 .. 0.93
   3 !    6.3   0.1    0.0025       9.1       4      28 ..      91     115 ..      89     117 .. 0.87
   4 !   22.5   0.4   2.1e-08   7.5e-05       7      41 ..     136     170 ..     130     171 .. 0.95
   5 ?    0.5   0.0      0.17   6.2e+02       7      41 ..     178     212 ..     175     213 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.2
      TPR_10 16 grydeAealleeala 30
                g++++A +ll +al+
  KIR65805.1 19 GDLAGAQQLLSDALS 33
                889999999988875 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.037
      TPR_10  9 analrqrgrydeAealleealairrrllGpdHP 41
                a++l ++g+ + A+ ++  a+a+  rl+G+d P
  KIR65805.1 54 ARVLVALGEPHSARGWAAFAYAAATRLHGRDDP 86
                789999***********************9988 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0025
      TPR_10   4 slnNLanalrqrgrydeAealleea 28 
                 +   La++l+++g y++A +l+ ++
  KIR65805.1  91 AAATLAAVLHRVGSYARAARLYSDV 115
                 6678*****************9666 PP

  == domain 4  score: 22.5 bits;  conditional E-value: 2.1e-08
      TPR_10   7 NLanalrqrgrydeAealleealairrrllGpdHP 41 
                 +La + ++rg+ + A++ l++a +++r+++G+ HP
  KIR65805.1 136 DLATVEYARGQCEVARERLQDAWELHREVYGDGHP 170
                 79********************************9 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.17
      TPR_10   7 NLanalrqrgrydeAealleealairrrllGpdHP 41 
                  L+ + r+ g+++++ + l  a +++r+ l +d P
  KIR65805.1 178 RLGSMQRDCGEFADSHDTLTLARELCRQHLAADDP 212
                 69999*******99998888888888888877665 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   2.8    0.0027       9.8      83     170 ..       8      98 ..       2     100 .. 0.66
   2 !   22.9   6.6   1.3e-08   4.7e-05      43     196 ..      50     208 ..      39     248 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0027
    TPR_MalT  83 llqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGielleql...epeaaldayvllari 170
                 l++qa +lv  G+L  A ++  +al  a+    ++ p    +  l+a++l   ++ + A+ ++  + + + +l   +  +a++a ++la +
  KIR65805.1   8 LTGQAHQLVSAGDLAGAQQLLSDALSDADPRPDHASPELAEAAGLQARVLVALGEPHSARGWAAFAYAAATRLhgrDDPRAVAAAATLAAV 98 
                 6677777777777777777777777777777777777665555777777777777777777777777655554333335666666666654 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 1.3e-08
    TPR_MalT  43 tavlGeasllqGdleaAlqalqeaekla...rqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndL 138
                   +++++ +  G+ ++A+ + + a+++a    + d ++ a+ a   +a +l   G+   A+++y + +   t +++++   v  +++ la + y ++++
  KIR65805.1  50 AGLQARVLVALGEPHSARGWAAFAYAAAtrlHGRDDPR-AVAAAATLAAVLHRVGSYARAARLYSDVIIELTASDGPESLRVLAAHADLATVEYARGQC 147
                 45566677778888888888776666552103333444.666666678888888********************************************* PP

    TPR_MalT 139 eeAeqhlqeGielleql...epeaaldayvllarialaqGdleeAetllekaeelaresnf 196
                 e A++ lq ++el +++   +    +++++ l   +  +G+  +++++l  a el r++  
  KIR65805.1 148 EVARERLQDAWELHREVygdGHPSGIKMLARLGSMQRDCGEFADSHDTLTLARELCRQHLA 208
                 ****************9532223445666666677778899************99997655 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.7   3.4e-06     0.012       1      45 [.      15      67 ..      15      71 .. 0.90
   2 ?    1.8   0.3     0.096   3.5e+02      20      48 ..      84     112 ..      69     123 .. 0.67
   3 !    7.2   0.4     0.002       7.3       5      55 ..     103     161 ..      99     167 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.4e-06
      TPR_19  1 llaegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAe 45
                l+ +gd+a A++ll+ al++        +p+ aea+ l A++l+alg++  A+
  KIR65805.1 15 LVSAGDLAGAQQLLSDALSDadprpdhaSPELAEAAGLQARVLVALGEPHSAR 67
                5679**************88888888889999*****99*********99887 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.096
      TPR_19  20 edpknaearllLAeallalgqldeAealL 48 
                 +dp   +a++ LA +l   g ++ A +l 
  KIR65805.1  84 DDPRAVAAAATLAAVLHRVGSYARAARLY 112
                 57777777777777777777777776654 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.002
      TPR_19   5 gdyaeAlalleqal.....qedpk...naearllLAeallalgqldeAealLdalpeed 55 
                 g ya+A++l++ ++     ++ p+    ++a ++LA + +a gq + A++ L++++e  
  KIR65805.1 103 GSYARAARLYSDVIieltaSDGPEslrVLAAHADLATVEYARGQCEVARERLQDAWELH 161
                 88999999999976444445577744455555599******************998866 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.6    0.0003       1.1       8      42 ..      12      47 ..       7      49 .. 0.79
   2 ?    3.2   2.7     0.055     2e+02       5      42 ..      51      93 ..      47      95 .. 0.71
   3 ?    7.6   0.9    0.0022       7.7       2      28 ..      90     116 ..      89     132 .. 0.80
   4 ?    4.7   1.0     0.019        68       2      30 ..     132     160 ..     131     166 .. 0.89
   5 ?    1.9   0.5      0.15   5.4e+02       4      30 ..     176     209 ..     173     229 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0003
      TPR_14  8 aeallalGdpdeAiallrralal.aPddaeawllla 42
                a+ l  +Gd+++A +ll +al++ +P ++ a  +la
  KIR65805.1 12 AHQLVSAGDLAGAQQLLSDALSDaDPRPDHASPELA 47
                78899*****************63677666655555 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.055
      TPR_14  5 lalaeallalGdpde....AiallrralalaP.ddaeawllla 42
                 + a++l alG+p      A+ ++ +a +l+  dd++a  + a
  KIR65805.1 51 GLQARVLVALGEPHSargwAAFAYAAATRLHGrDDPRAVAAAA 93
                5679*********996777777777777766536677776665 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0022
      TPR_14   2 eallalaeallalGdpdeAiallrral 28 
                 +a + la++l + G +++A++l+ +++
  KIR65805.1  90 AAAATLAAVLHRVGSYARAARLYSDVI 116
                 68899*******************974 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.019
      TPR_14   2 eallalaeallalGdpdeAiallrralal 30 
                 +a+++la +++a+G+ + A++ l++a +l
  KIR65805.1 132 AAHADLATVEYARGQCEVARERLQDAWEL 160
                 6999********************99665 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.15
      TPR_14   4 llalaeallalGdpde.......Aiallrralal 30 
                 l++l++  +  G++++       A++l+r+ la+
  KIR65805.1 176 LARLGSMQRDCGEFADshdtltlARELCRQHLAA 209
                 6777778888888877555455566666666553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 4028.59
//
Query:       KIR65806.1  [L=173]
Description: glyoxalase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-16   59.2   0.0    6.6e-16   58.7   0.0    1.2  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    2.4e-06   28.3   0.1    3.7e-06   27.7   0.1    1.3  1  Glyoxalase_6  Glyoxalase-like domain
    9.7e-06   25.8   0.0    1.6e-05   25.1   0.0    1.4  1  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
     0.0002   21.5   0.2     0.0078   16.3   0.2    2.1  1  Glyoxalase_3  Glyoxalase-like domain
  ------ inclusion threshold ------
       0.15   12.0   0.0       0.26   11.2   0.0    1.3  1  Glyoxalase_2  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   1.8e-19   6.6e-16       1     128 []       5     127 ..       5     127 .. 0.83

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 1.8e-19
                 EEEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSC.....TSEEEEEEEEEHCHHHHHHHHH CS
  Glyoxalase   1 gidhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkiee.....tvhhvafialdvedvgkaldrl 94 
                 +++h++l+v+dle+s++FY++vLGf+ +  t+   +  g+ + +   +++ + l l+e    a  +           +  h+a+ +++ ++++ + +rl
  KIR65806.1   5 RLNHAVLYVSDLERSVAFYRDVLGFRAIPMTP--DGFRGAAFLQAPGSTNDHDLGLFEIGRAAGRST----AgratvGLYHLAWEVDTLDELAVTAQRL 97 
                 589*****************************..666777777777888889888888776666666....23457899******************** PP

                 HHTTGEEEEEEECHHCTEEEEEEEEETTSEEEEE CS
  Glyoxalase  95 keagvkvvaepgrhyfgalysfyfrDpdGillei 128
                 ++ag    +  ++  +++ly    +DpdG ++ei
  KIR65806.1  98 AAAG-ALAGSSDHGTTKSLY---GKDPDGLEFEI 127
                 ****.555555555666666...9*********8 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1     1e-09   3.7e-06       3     107 .]      10     128 ..       8     128 .. 0.68

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1e-09
  Glyoxalase_6   3 vldaadpaalaaFwaaalgweveree.......aaledpegvgpaaedaatllfqrvpe.......................paknr...vHldlav 66 
                   vl ++d ++ +aF++++lg+++ +         a                   f ++p                        +        Hl  +v
    KIR65806.1  10 VLYVSDLERSVAFYRDVLGFRAIPMTpdgfrgaA-------------------FLQAPGstndhdlglfeigraagrstagrA---TvglYHLAWEV 84 
                   67789*****************999955555531...................333333333344444444444557654431...13449999999 PP

  Glyoxalase_6  67 ...edldaevarlvalGArvlreprdgthgr.vlaDPeGneFcvv 107
                      ++l+ +++rl a+GA   + +++ t+     +DP+G eF +v
    KIR65806.1  85 dtlDELAVTAQRLAAAGALAGSSDHGTTK-SlYGKDPDGLEFEIV 128
                   44555669999999999988877666554.46**********986 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   4.5e-09   1.6e-05       2      91 ..       8     102 ..       7     115 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 4.5e-09
                   EEEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTT.EEEEEEEETT....EEEEEEEESSTT-THHHTS-EEEEEEEEES-HHH...HHHHHCTTT CS
  Glyoxalase_4   2 QigivVeDleaavarfsallGvgpwqryrdepqevd.lafallgsgs....vqieLieplegpeflaehgeglhhlaywvddlda...avarleeqG 90 
                   +  + V Dle+ va++ ++lG++    ++ +p +++  af+++ ++     + +  i    g+++  +   gl+hla++vd ld+   + +rl+++G
    KIR65806.1   8 HAVLYVSDLERSVAFYRDVLGFR---AIPMTPDGFRgAAFLQAPGSTndhdLGLFEIGRAAGRSTAGRATVGLYHLAWEVDTLDElavTAQRLAAAG 101
                   88999****************75...5555555555234455544435634555556788899*****************96665111566666666 PP

                   E CS
  Glyoxalase_4  91 f 91 
                   +
    KIR65806.1 102 A 102
                   4 PP

>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   2.2e-06    0.0078       1      37 [.       6      42 ..       6     158 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.2e-06
  Glyoxalase_3  1 lDHvvlavpdleeaaarfarrlGftvtpggehpglgt 37
                  l H+vl+v+dle+ +a +++ lGf+++p       g+
    KIR65806.1  6 LNHAVLYVSDLERSVAFYRDVLGFRAIPMTPDGFRGA 42
                  68***********************998766555554 PP

>> Glyoxalase_2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.2e-05      0.26       2      24 ..       7      29 ..       6      33 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.2e-05
                  -----EES-HHHHHHHHHHTT-- CS
  Glyoxalase_2  2 klillvvkdieeskkFYedvlel 24
                  + ++l+v d+e+s  FY+dvl  
    KIR65806.1  7 NHAVLYVSDLERSVAFYRDVLGF 29
                  5789****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1303.62
//
Query:       KIR65807.1  [L=306]
Description: hypothetical protein TK50_10850 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2280.94
//
Query:       KIR65808.1  [L=181]
Description: ion transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-13   50.0   2.7    4.7e-13   48.9   2.7    1.6  1  Ion_trans_2      Ion channel
    0.00023   20.5   0.1    0.00039   19.7   0.1    1.4  2  Ion_trans        Ion transport protein
  ------ inclusion threshold ------
      0.019   14.8   2.5      0.046   13.5   2.5    1.7  1  IRK              Inward rectifier potassium channel transmemb
       0.45   10.9   4.7       0.28   11.5   1.4    2.1  2  Phage_holin_5_2  Phage holin family Hol44, in holin superfami


Domain annotation for each model (and alignments):
>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   2.7     1e-16   4.7e-13      11      77 ..      98     174 ..      88     176 .. 0.83

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1e-16
                  HHHHHT..............T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  11 aviysl..........eegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvl 77 
                   + ++l          +e+++  + +dalYf++ tltT+GYGd+ +++++ r+ ++v +++ ++++++  +++++ l
   KIR65808.1  98 LLAFALadyviarsapGEFVNLTTRIDALYFTLATLTTVGYGDVHAQGQFARVAVCVQMVFTIGVVTTGASIVVRQL 174
                  44444444455777899999999************************8888****************9999999876 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.78   3.5e+03      18      19 ..      35      36 ..      19      74 .. 0.50
   2 !   19.7   0.1   8.7e-08   0.00039     128     225 ..      85     162 ..      81     180 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.78
                HH CS
   Ion_trans 18 fl 19
                ++
  KIR65808.1 35 LV 36
                22 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 8.7e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 128 kdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsfll 225
                 ++ll+++++l+  l++fal+ + +               +++   + n ++ ++al++++ ++tt+g+gd++++ + ++      + v++ +++++ +
  KIR65808.1  85 RSLLQLAVALIGGLLAFALADYVIA--------------RSAPGEFVNLTTRIDALYFTLATLTTVGYGDVHAQGQFAR------VAVCVQMVFTIGV 162
                 6788889999999999999998888..............678899**********************************......4444444444443 PP

>> IRK  Inward rectifier potassium channel transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.5     1e-05     0.046      81     141 ..     118     176 ..      83     177 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1e-05
         IRK  81 nvksftsallfslEtqttigyGsrvvteeCpeailllviqsivgllidavlvgivlaKlar 141
                 n+++ ++al f+l t tt+gyG  +   + + a + +++q+++++ + ++  +iv+ +lar
  KIR65808.1 118 NLTTRIDALYFTLATLTTVGYGDVHA--QGQFARVAVCVQMVFTIGVVTTGASIVVRQLAR 176
                 66777899**************9766..566788999999999998888888888888876 PP

>> Phage_holin_5_2  Phage holin family Hol44, in holin superfamily V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.25   1.1e+03      25      63 ..      90     102 ..      65     117 .. 0.73
   2 ?   11.5   1.4   6.2e-05      0.28      42      74 ..     144     177 ..     125     178 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.25
  Phage_holin_5_2  25 lilgiiGiilgvvivftadfqaedilifgaiiqGilsgg 63 
                      l +++iG++l+                           +
       KIR65808.1  90 LAVALIGGLLA--------------------------FA 102
                      44556666666..........................33 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6.2e-05
  Phage_holin_5_2  42 a.dfqaedilifgaiiqGilsggastglnQliKQ 74 
                      + +f   ++ ++  +++G++++gas+ + Ql +Q
       KIR65808.1 144 QgQFARVAVCVQMVFTIGVVTTGASIVVRQLARQ 177
                      25666667777779******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1422.92
//
Query:       KIR65809.1  [L=59]
Description: hypothetical protein TK50_10860 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-09   38.0   0.4    2.1e-09   37.8   0.4    1.1  1  DUF4236   Protein of unknown function (DUF4236)


Domain annotation for each model (and alignments):
>> DUF4236  Protein of unknown function (DUF4236)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.4   1.2e-13   2.1e-09       2      54 ..       4      52 ..       3      53 .. 0.93

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.2e-13
     DUF4236  2 rFrksikigPgvrlNlSksGi.SvSvGvrgarvtvgkrggtylsvglPGtGLsy 54
                 Frk++k+gP + lN+++ G  S+S+++ +++ + +++     +v+lPG +Ls+
  KIR65809.1  4 MFRKRKKYGP-IILNFTENGFsSWSIKIGRWSWNSRAK---AHRVDLPG-PLSW 52
                6*********.**********999*********99999...679*****.***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 436.91
//
Query:       KIR65810.1  [L=175]
Description: flavin reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-32  112.7   0.3    1.9e-32  112.5   0.3    1.0  1  Flavin_Reduct  Flavin reductase like domain


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5   0.3     1e-36   1.9e-32       5     152 ..      26     173 ..      23     175 .] 0.90

  Alignments for each domain:
  == domain 1  score: 112.5 bits;  conditional E-value: 1e-36
                    -EE-EEEEE.EETTEEE..........EEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBCCGHHHHHHTCS...SCCCCCCCCC. CS
  Flavin_Reduct   5 aqpvavvttsvpptspl..........gatlssftslsldPplvafslrlpsstadalkeagefvinllsesqealadafsqksgprtddksifa. 89 
                    a  vavvtt   p++p+          ++t++sft++sl+Pplv+f+l+++ss++ a+++a++++++ll++ q+ +a+a++ +s+    d+  fa 
     KIR65810.1  26 AATVAVVTT---PGRPArrgrpalppaAFTATSFTAVSLEPPLVSFCLGTASSSWPAVARAEHVAVHLLAAGQQGVARALAVGSP----DR--FAa 112
                    6789*****...6666656566666666******************************************************777....78..888 PP

                    CCEEECTCCCSEEETTCSEEEEEEEEEEECCTTEEEEEEEEEEEEESTTECTTBEECCCCCEE CS
  Flavin_Reduct  90 gltweesptgapallgalasleCqvvgsvelgdhelfigeVvavkvgddadeepLlywrrrya 152
                       w+++p g+p+++gala+l C+v ++v++gdh l+i+   a   g d  ++p +++r+ + 
     KIR65810.1 113 RPGWSPGPFGVPLVDGALAVLLCRVAHRVPAGDHALVIATPIALGAGRD--GAPPVHHRGAFS 173
                    999*****************************************98887..5699****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      166  (0.00925874); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1257.31
//
Query:       KIR65811.1  [L=151]
Description: Rrf2 family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-26   92.3   0.1    2.7e-26   91.7   0.1    1.3  1  Rrf2      Transcriptional regulator
  ------ inclusion threshold ------
      0.066   13.1   0.9       0.26   11.2   0.4    2.1  2  MarR_2    MarR family
       0.13   12.1   0.0       0.22   11.4   0.0    1.3  1  TrmB      Sugar-specific transcriptional regulator TrmB


Domain annotation for each model (and alignments):
>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.1   4.6e-30   2.7e-26       1      83 []       1      82 [.       1      82 [. 0.99

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 4.6e-30
                X---HHHHHHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSHCCCSBHHHHHHHH CS
        Rrf2  1 MklsskteyalhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLakppeeItlldvvrav 83
                M++s++++ya++a l La+ + +  +s+++ia++q++++++le +la Lr+aglv+++rG++GGy+La+pp+eIt++ ++rav
  KIR65811.1  1 MQISARGDYAVRAALSLATAYPSL-LSTQAIAAEQDMPRKFLEAVLADLRRAGLVRAQRGAEGGYTLARPPKEITIGAILRAV 82
                9*********************87.********************************************************97 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   4.3e-05      0.26      22      58 ..      25      61 ..      10      63 .. 0.87
   2 ?   -0.6   0.0      0.22   1.3e+03      15      30 ..      66      81 ..      63      83 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.3e-05
                EEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSS CS
      MarR_2 22 ltvgelarrlglsksavsrilkrLvaaGLverrpgpe 58
                l+ +++a++ ++++  +  +l++L +aGLv+ ++g e
  KIR65811.1 25 LSTQAIAAEQDMPRKFLEAVLADLRRAGLVRAQRGAE 61
                58899**************************999876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.22
                HCTTTSEEEHHHHHHH CS
      MarR_2 15 grrpgrdltvgelarr 30
                 +rp++++t+g++ r+
  KIR65811.1 66 LARPPKEITIGAILRA 81
                57888999*9999885 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.7e-05      0.22      24      59 ..      26      61 ..      17      72 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.7e-05
                HHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTT CS
        TrmB 24 tadeiaeelgvprskvYevLrsLedkGlVerekgrp 59
                +++ ia e + pr     vL  L ++GlV+ ++g  
  KIR65811.1 26 STQAIAAEQDMPRKFLEAVLADLRRAGLVRAQRGAE 61
                5788999*************************9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1119.37
//
Query:       KIR65812.1  [L=258]
Description: 3-oxoacyl-ACP reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-55  188.3   0.4    1.9e-55  188.0   0.4    1.0  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    1.8e-51  174.4   0.0    2.3e-51  174.0   0.0    1.1  1  adh_short      short chain dehydrogenase
    9.9e-09   35.4   0.1    1.4e-08   34.9   0.1    1.3  1  KR             KR domain
  ------ inclusion threshold ------
      0.024   14.5   0.0      0.046   13.6   0.0    1.4  1  TRI9           TRI9 protein
       0.03   14.7   0.6       0.11   12.9   0.3    1.9  2  NAD_binding_7  Putative NAD(P)-binding
      0.036   13.2   0.0      0.069   12.3   0.0    1.4  1  NAD_binding_4  Male sterility protein
      0.056   14.0   0.1       0.15   12.7   0.1    1.6  1  ATPgrasp_N     ATP-grasp N-terminal domain
       0.14   11.5   1.0       0.92    8.8   0.0    2.4  3  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
       0.17   11.3   0.2       0.74    9.2   0.2    1.9  1  Epimerase      NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.0   0.4   9.7e-59   1.9e-55       3     234 .]      18     255 ..      15     255 .. 0.95

  Alignments for each domain:
  == domain 1  score: 188.0 bits;  conditional E-value: 9.7e-59
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdra 98 
                    +gIG  iA+ + ++Ga+vv++ ++ +  ++ ++el +e+  e++++D +++e    l+e+v+e++++lD+lvnnag +    +p++  +++ fd+ 
    KIR65812.1  18 SRGIGLMIARGFVRAGAHVVISSRKADVcEAVAKELSAEGRCEAIPADLSRDEGALGLAEAVRERVDRLDVLVNNAGATWG--APLEAYPESAFDKL 112
                   59**************************9999999999999***************************************9..************** PP

                   HHHHTHHHHHHHHHHHH.HCTSC.....CEEEEEEEGGGTSB.STTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHH CS
  adh_short_C2  99 ldvnlyslfllakaalp.lmkeg.....gsivnlssvgaerv.vpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdel 188
                    +vn++++f+l+ a+lp l ++      ++++n+ s+ + rv + +  ay+a+Kaa++ ltr+lA++l+ + i+vNa++pgp + ++++ + + +e 
    KIR65812.1 113 WAVNVKAVFRLTTALLPeLRAAAsaddpARVINIGSIDGIRVpWLEVYAYSATKAAVHMLTRSLAHQLAGEHITVNAIAPGPFESKMMAFALDDPEA 209
                   *****************733333457899*********9999677777************************************************* PP

                   HHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 189 leelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   ++++e++ plgr+g+p+++a aa++L s + +y tG+++ vDgG+t
    KIR65812.1 210 RSAIEKQVPLGRIGRPDDMAGAAIYLSSRAGAYLTGAVIPVDGGVT 255
                   ********************************************97 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.0   0.0   1.2e-54   2.3e-51       1     189 [.      10     202 ..      10     208 .. 0.97

  Alignments for each domain:
  == domain 1  score: 174.0 bits;  conditional E-value: 1.2e-54
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 k+vlvtG+s+GIG+ ia+ ++++Ga+vv+ +r+++ +e+vakel +e  +  ai++D++  e +  l e++++++++ldvLvnNAG t+ +p + + e+
  KIR65812.1  10 KTVLVTGGSRGIGLMIARGFVRAGAHVVISSRKADVCEAVAKELSAE-GRCEAIPADLSRDEGALGLAEAVRERVDRLDVLVNNAGATWGAPLEAYPES 107
                 79*******************************************96.79************************************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHH....HCTTEEEEEEEEGGG.TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short 100 ewervievNltgvflltravlpaml....kqssGrIvnvsSvag.kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 +++++ +vN+++vf lt a+lp++     +   +r++n++S+ g +vp+ +v aYsA+Kaav++ltrsla++la + i+vna+aPG+++++m++ 
  KIR65812.1 108 AFDKLWAVNVKAVFRLTTALLPELRaaasADDPARVINIGSIDGiRVPWLEVYAYSATKAAVHMLTRSLAHQLAGEHITVNAIAPGPFESKMMAF 202
                 ***********************99888888899**********99*********************************************9875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.1     7e-12   1.4e-08       2     124 ..      11     128 ..      10     179 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 7e-12
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 t+l+tGG  g+Gl +ar  ++ ga h+v+ sR+a   +  +a  +el+a g ++e+++aD+s  +    l e+++++ +++   ++ Ag++  ++le  
  KIR65812.1  11 TVLVTGGSRGIGLMIARGFVRAGA-HVVISSRKA---DVCEAVAKELSAEG-RCEAIPADLSRDEGALGLAEAVRERVDRLDVLVNNAGATWGAPLEAY 104
                 78********************98.89999**94...44455678888866.89********************************************* PP

                 -HHHHHHHHTTTTHHHHHHHHHTT CS
          KR 101 taedleqvlapKvkGawnLhelle 124
                  +++++++ a  vk++  L ++l 
  KIR65812.1 105 PESAFDKLWAVNVKAVFRLTTALL 128
                 ****************99998875 PP

>> TRI9  TRI9 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.3e-05     0.046      17      32 ..     154     169 ..     141     172 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.3e-05
        TRI9  17 vsWLevFaYsGvsaaL 32 
                 v WLev+aYs   aa+
  KIR65812.1 154 VPWLEVYAYSATKAAV 169
                 89*********99995 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   5.6e-05      0.11       4      54 ..       6      65 ..       4      96 .. 0.66
   2 ?   -1.1   0.0       1.3   2.6e+03      63      78 ..     198     213 ..     158     222 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.6e-05
  NAD_binding_7  4 dlkgkkvlvvGgGe.vAarkvrklleagakvtvvapev..keele......elvklaeee 54
                    ++gk+vlv Gg + +++  +r +++aga+v++ + +   +e++       +++++++ +
     KIR65812.1  6 SVEGKTVLVTGGSRgIGLMIARGFVRAGAHVVISSRKAdvCEAVAkelsaeGRCEAIPAD 65
                   689*********9769*****************888854433333222233333333333 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.3
  NAD_binding_7  63 dlviaatddrelneri 78 
                    ++   a dd+e +++i
     KIR65812.1 198 KMMAFALDDPEARSAI 213
                    3444455555555555 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.5e-05     0.069      52     115 ..      47     120 ..      29     127 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.5e-05
                    HHHHH..HHTTTEEEEE--TTSGG..GG--HHHHHHHHHH--EEEE--SS-S.ST.......TSSEEHHHHHHHH CS
  NAD_binding_4  52 sallk..elaerikvveGDlsepr..lGLseedlqelaeevdviihsaAtvnfde.......pykellrvNveGt 115
                    +a+ k  +++ r++++++Dls+++  lGL e+ ++++ +++dv +++a+ +             ++l++vNv+++
     KIR65812.1  47 EAVAKelSAEGRCEAIPADLSRDEgaLGLAEAVRERV-DRLDVLVNNAGATWGAPleaypesAFDKLWAVNVKAV 120
                    33323346899**********9977799987766665.*********9876322111111224455666666665 PP

>> ATPgrasp_N  ATP-grasp N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   7.4e-05      0.15       6      52 ..      31      83 ..      30      90 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.4e-05
                HTT-EEEEEEETTS-....---S-TT.EEEEEEE-TTT-HHHHH..HHHHHHH CS
  ATPgrasp_N  6 aLGikvvlvdeedew....apeelaelvekfipldlaqdpdaal..eavrals 52
                + G +vv+ +++ ++    a+e++ae + ++ip dl+ d++a+   eavr++ 
  KIR65812.1 31 RAGAHVVISSRKADVceavAKELSAEGRCEAIPADLSRDEGALGlaEAVRERV 83
                6799*******9555444466666779************98553337777754 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00046      0.92      33      78 ..       6      51 ..       2      73 .. 0.84
   2 ?    0.8   0.0      0.14   2.8e+02      16      41 ..     162     187 ..     142     204 .. 0.74
   3 ?   -4.2   0.2       4.8   9.6e+03     131     140 ..     245     254 ..     243     255 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00046
                   --TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHC CS
  THF_DHG_CYH_C 33 elegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitr 78
                   ++egk+v+v G s+ +g  +a  + +++a V +  +k++  +++ +
     KIR65812.1  6 SVEGKTVLVTGGSRGIGLMIARGFVRAGAHVVISSRKADVCEAVAK 51
                   789*****************************99999877666655 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.14
                    --HHHHHHHHHHHHCT---TT-EEEE CS
  THF_DHG_CYH_C  16 lpctpkgvvellketgielegkkvvv 41 
                     ++t ++v  l ++   +l+g++++v
     KIR65812.1 162 YSATKAAVHMLTRSLAHQLAGEHITV 187
                    56666666666666666777766665 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 4.8
                    SEE--TTTSC CS
  THF_DHG_CYH_C 131 saitPvpgGV 140
                    +a+ Pv gGV
     KIR65812.1 245 GAVIPVDGGV 254
                    57789***99 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2   0.00037      0.74       1     160 [.      12     180 ..      12     204 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00037
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.............EEEE--TT-HHHHHHHHHHHT-SEEEE--S.---HHHHHHSHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.............elveldltdrsalerlfkeeqpdavihlAa.vggvaassedpa 85 
                 +lVtG++  iG  +++ + ++g +v+  +r+  + ++a  ++l             +  e+ l  ++a+++ ++  + d+ ++ A+   g +    +p+
  KIR65812.1  12 VLVTGGSRGIGLMIARGFVRAGAHVVISSRK-ADVCEAVAKELsaegrceaipadlSRDEGALGLAEAVRERVD--RLDVLVNNAGaTWGAP-LEAYPE 106
                 79********************998888888.555556666667999997666666666666666668888888..8999999977443333.344444 PP

                 ....HHHHHHTHHHHHHHHHHH........HHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH CS
   Epimerase  86 ....dfieknlqgtlnlleaar........kagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy 160
                     +++  n++ + +l  a+         + ++ r+++++S         + +   +   p+    +Y+a+K+a++ l++++a+q 
  KIR65812.1 107 safdKLWAVNVKAVFRLTTALLpelraaasADDPARVINIGS---------I-DGIRV---PWLEVYAYSATKAAVHMLTRSLAHQL 180
                 111134556666666666665544443333223335555555.........1.22223...55566677777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1729.79
//
Query:       KIR65813.1  [L=143]
Description: sporulation protein SsgA [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-36  121.7   0.1    1.4e-35  121.2   0.1    1.3  1  SsgA      Streptomyces sporulation and cell division protein,


Domain annotation for each model (and alignments):
>> SsgA  Streptomyces sporulation and cell division protein, SsgA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.1     8e-40   1.4e-35       1      98 []      27     126 ..      27     126 .. 0.97

  Alignments for each domain:
  == domain 1  score: 121.2 bits;  conditional E-value: 8e-40
                 EEEEEEEETTSTTEEEEEEE..-SS---EEEEEEHHHHHHHTTS-EEETTEEEEEEE.ETTEEEEEEE--TT--EEEEEEHHHHHHHHHHHHHHS-TT- CS
        SsgA   1 vpaelrYdaadPfaVrlafp..tdgdeevewvfaRelLaeGlrapageGdVrvwPaereeedelvlelrspegeallelsaealarFLrrtealvpage 97 
                 v+a+lrYd+adP+aV++ f+  ++g+e v+w+faRelL +Gl++pag GdVrvwP++++++d + l+l+sp+g+al+e+++++l rFLrrt+ +vp+g+
  KIR65813.1  27 VRASLRYDPADPYAVHVLFHaeSAGGEAVSWSFARELLVTGLDEPAGIGDVRVWPWATPRGDFVALALSSPDGNALFEVPRSVLVRFLRRTYVVVPRGR 125
                 799*****************887889*******************************9988*************************************9 PP

                 H CS
        SsgA  98 E 98 
                 E
  KIR65813.1 126 E 126
                 8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       162  (0.00903564); expected 358.6 (0.02)
Passed bias filter:                      146  (0.00814323); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1110.59
//
Query:       KIR65814.1  [L=400]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-10   40.5   4.6    2.6e-10   40.5   4.6    5.9  6  HTH_31    Helix-turn-helix domain
    0.00048   20.1   0.5     0.0056   16.7   0.0    2.6  3  HTH_3     Helix-turn-helix
      0.008   16.4   5.9      0.008   16.4   5.9    4.0  5  TPR_12    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.041   13.9   0.0       0.11   12.5   0.0    1.8  1  HTH_19    Helix-turn-helix domain
       0.44   10.5   2.1       0.87    9.5   0.3    2.2  2  Nre_C     Archaeal Nre, C-terminal


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   4.6   7.2e-14   2.6e-10       1      61 [.      19      78 ..      19      91 .. 0.95
   2 ?    2.5   0.2     0.052   1.9e+02      22      39 ..      99     116 ..      76     131 .. 0.76
   3 ?    1.2   0.1      0.13   4.8e+02      25      47 ..     135     157 ..     127     172 .. 0.85
   4 ?   -3.6   5.7       4.3   1.5e+04      25      35 ..     254     267 ..     161     281 .. 0.64
   5 ?   -1.6   0.3         1   3.6e+03      38      56 ..     324     341 ..     321     350 .. 0.67
   6 ?   -3.0   0.2       2.8     1e+04      11      13 ..     371     373 ..     354     391 .. 0.59

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 7.2e-14
      HTH_31  1 aLGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaer 61
                ++Ga+ ralR+ +GLs+++++++++  +s+l++lE+G+   p+p++ + l ++l++ +a+ 
  KIR65814.1 19 RFGARMRALRADRGLSLRALGQLAHRGKSHLHDLETGAK-APTPETARHLDEVLQAGGALA 78
                69*************************************.5***************99865 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.052
      HTH_31  22 erlgvsestlsrlEqGrr 39 
                 +++ vs+ tl r+E    
  KIR65814.1  99 RASDVSAETLARIEASVD 116
                 455599999999998655 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.13
      HTH_31  25 gvsestlsrlEqGrrgrpspavl 47 
                 +   ++++rl  Gr ++++++ l
  KIR65814.1 135 RRHLAYVGRLLDGRGTLVQRRRL 157
                 567899*********99988765 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 4.3
      HTH_31  25 g...vsestlsrlE 35 
                 g    +++ l rlE
  KIR65814.1 254 GdvrRTRDALDRLE 267
                 02223333344443 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 1
      HTH_31  38 rrgrpspavlealaralgl 56 
                    rp++++ ++l  al l
  KIR65814.1 324 GD-RPRRSASARLDLALAL 341
                 45.6888888887777665 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 2.8
      HTH_31  11 era 13 
                 +r+
  KIR65814.1 371 ARE 373
                 333 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.6e-06    0.0056       2      48 ..      25      71 ..      24      73 .. 0.93
   2 ?    0.4   0.0       0.2   7.2e+02      18      31 ..     100     113 ..      99     117 .. 0.84
   3 ?   -3.7   0.2       3.8   1.4e+04       5      14 ..     219     230 ..     217     232 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.6e-06
                HHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHH CS
       HTH_3  2 kelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaL 48
                ++lR  +gls++ L +++   +s++ ++E G  +P++et+  l ++L
  KIR65814.1 25 RALRADRGLSLRALGQLAHRGKSHLHDLETGAKAPTPETARHLDEVL 71
                89*****************************999*****98777776 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.2
                 HHTSSHHHHHHHHT CS
       HTH_3  18 klGvsrstisriEn 31 
                 +++vs  t++riE 
  KIR65814.1 100 ASDVSAETLARIEA 113
                 6789999*****96 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3.8
                 HHHTTHHH..HH CS
       HTH_3   5 Rkqlglsq..ee 14 
                 R++ +lsq  ++
  KIR65814.1 219 RQAIDLSQqaQQ 230
                 778888885555 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1         2   7.3e+03      45      55 ..      32      42 ..      25      46 .. 0.58
   2 !   16.4   5.9   2.2e-06     0.008       8      76 ..     167     233 ..     163     234 .. 0.92
   3 ?   -0.9   0.1      0.56     2e+03      57      73 ..     255     271 ..     236     274 .. 0.68
   4 !    6.7   0.1    0.0025       8.9      44      73 ..     330     359 ..     321     362 .. 0.88
   5 ?   -2.6   0.1         2   7.1e+03      12      45 ..     374     386 ..     370     396 .. 0.48

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2
      TPR_12 45 attlrnLgrly 55
                  +lr+Lg+l 
  KIR65814.1 32 GLSLRALGQLA 42
                34555555554 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 2.2e-06
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                  +a+v+  l +   A ++l +a ++a+ +  ++ +  a++l + ++  + +g++++A++l ++a ++a+
  KIR65814.1 167 LRATVHIDLRQRSAAGAHLVAAAALAEHA--EHAEIQAWCLETRAWDRLTQGEHRQAIDLSQQAQQLAP 233
                 5899999999999*************877..999******************************88875 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.56
      TPR_12  57 algryeeAlelleeala 73 
                    r+++Al++le+ +a
  KIR65814.1 255 DVRRTRDALDRLERLTA 271
                 45688999999999776 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0025
      TPR_12  44 tattlrnLgrlyralgryeeAlelleeala 73 
                  a+++ +L+ ++ a+++++eA +   ea++
  KIR65814.1 330 SASARLDLALALVAADQPDEASAVAAEAIR 359
                 689999****************99999986 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 2
      TPR_12  12 vlrrlgrydeAlellekaleiarrllGpdhplta 45 
                 vlrr ++ d A+                     a
  KIR65814.1 374 VLRRVEQTDTAE---------------------A 386
                 333333333333.....................2 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.1e-05      0.11       1      51 [.      21      70 ..      21      97 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.1e-05
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaea 51
                G r +++R  +gl++++l + ++  +s ++ +E+g k  p++e+ +++ e 
  KIR65814.1 21 GARMRALRADRGLSLRALGQLAHRGKSHLHDLETGAK-APTPETARHLDEV 70
                8899****************99999**********87.8999998776665 PP

>> Nre_C  Archaeal Nre, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.27   9.5e+02      11      39 ..     179     207 ..     166     215 .. 0.82
   2 ?    9.5   0.3   0.00024      0.87      30      79 ..     346     395 ..     331     399 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.27
       Nre_C  11 eiaGaYyaarlavleaLekikrqakvivl 39 
                 + aGa+  a  a +e+ e+ + qa ++  
  KIR65814.1 179 SAAGAHLVAAAALAEHAEHAEIQAWCLET 207
                 46899999999999999999999988755 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00024
       Nre_C  30 ikrqakvivlreitpeYwaPvGvWqvReavrkalekkpkefesleealee 79 
                 +  +a+++    i+++ +aP   W+ Re +r++ +++++e++ l+e+ e+
  KIR65814.1 346 QPDEASAVAAEAIRSGRVAPSNWWRAREVLRRVEQTDTAEASALREVYEA 395
                 3458999*************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3139.68
//
Query:       KIR65815.1  [L=71]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-17   61.2   0.0    6.1e-17   61.0   0.0    1.0  1  GntR      Bacterial regulatory proteins, gntR family
  ------ inclusion threshold ------
      0.039   14.4   0.0       0.11   12.9   0.0    1.7  2  PP2C_C    Protein serine/threonine phosphatase 2C, C-terminal
       0.12   12.8   0.0       0.17   12.3   0.0    1.2  1  Rrf2      Transcriptional regulator


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0     1e-20   6.1e-17       2      64 .]       7      69 ..       6      69 .. 0.99

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 1e-20
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                yeq+++ L e+I sge+ pG++LPs reL + +gV+ ++v +A++ L  +g+ e  +g+G+fV
  KIR65815.1  7 YEQIADDLAERITSGEFPPGSRLPSRRELIEHYGVTEPVVDRAMQVLRIKGMTETLPGVGVFV 69
                9*************************************************************9 PP

>> PP2C_C  Protein serine/threonine phosphatase 2C, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.9e-05      0.11      46      77 ..       6      38 ..       1      40 [. 0.81
   2 ?   -0.8   0.0      0.36   2.2e+03      48      67 ..      47      66 ..      42      70 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.9e-05
      PP2C_C 46 dlekvlkvLased.ipnlPpGgglasKrsvIek 77
                 +e++   La++    ++PpG  l+s+r++Ie+
  KIR65815.1  6 RYEQIADDLAERItSGEFPPGSRLPSRRELIEH 38
                67888888875543779**************96 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.36
      PP2C_C 48 ekvlkvLasedipnlPpGgg 67
                ++ ++vL+ + +++  pG g
  KIR65815.1 47 DRAMQVLRIKGMTETLPGVG 66
                56688888666555555555 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.8e-05      0.17      27      61 ..      31      65 ..      24      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.8e-05
                -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
        Rrf2 27 sseeiaerqnispsylekilakLrkaglvksvrGk 61
                s +e+ e++++ ++++ + ++ Lr +g+ ++  G+
  KIR65815.1 31 SRRELIEHYGVTEPVVDRAMQVLRIKGMTETLPGV 65
                568999**************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 541.55
//
Query:       KIR65816.1  [L=412]
Description: hypothetical protein TK50_10910 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-13   49.3   5.4    4.7e-13   49.3   5.4    4.1  5  HTH_31      Helix-turn-helix domain
    2.7e-12   46.6   0.4    7.8e-12   45.1   0.4    1.9  1  HTH_3       Helix-turn-helix
    8.7e-10   38.5   0.0    1.8e-09   37.5   0.0    1.5  1  HTH_19      Helix-turn-helix domain
    1.6e-05   25.2   0.0    4.5e-05   23.8   0.0    1.8  1  HTH_26      Cro/C1-type HTH DNA-binding domain
    0.00096   19.0   2.2     0.0042   16.9   2.2    2.2  1  HTH_25      Helix-turn-helix domain
    0.00098   18.6   0.5     0.0044   16.6   0.1    2.3  2  HTH_24      Winged helix-turn-helix DNA-binding
     0.0059   16.5   1.1      0.019   14.9   0.0    2.3  2  HTH_37      Helix-turn-helix domain
  ------ inclusion threshold ------
      0.019   14.7   0.6       0.68    9.8   0.0    3.2  3  MerR        MerR family regulatory protein
      0.026   14.8   1.7      0.026   14.8   1.7    5.0  7  TPR_12      Tetratricopeptide repeat
      0.027   14.0   1.6       0.19   11.3   1.7    2.2  2  Sigma70_r4  Sigma-70, region 4
      0.054   13.1   0.5        2.5    7.8   0.4    2.9  2  GntR        Bacterial regulatory proteins, gntR family
       0.18   12.0   5.4         12    6.3   0.0    4.5  5  TPR_2       Tetratricopeptide repeat
        2.2    8.8   7.2       0.53   10.8   1.1    3.0  3  Usp         Universal stress protein family


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   5.4   3.4e-16   4.7e-13       3      59 ..       7      63 ..       5      69 .. 0.94
   2 ?   -0.4   0.1       1.1   1.6e+03      17      31 ..     222     236 ..     217     255 .. 0.78
   3 ?   -3.2   0.2         8   1.1e+04      18      28 ..     269     279 ..     256     288 .. 0.62
   4 ?   -1.8   0.1       3.1   4.2e+03      17      33 ..     310     343 ..     304     344 .. 0.66
   5 ?   -0.7   0.1       1.4   1.9e+03      28      55 ..     383     409 ..     362     412 .] 0.74

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 3.4e-16
      HTH_31  3 GalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpa 59
                G++L++ R++++L+qe++Aer+gvs+  +++lEqG rg  ++++l alaralg++ +
  KIR65816.1  7 GDRLAEIRRESRLTQEQLAERSGVSVEVIRKLEQGSRGTARLDTLHALARALGVPTS 63
                9*****************************************************854 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.1
      HTH_31  17 qeevAerlgvsestl 31 
                  +e+Ae++ v+++ +
  KIR65816.1 222 IREAAELAVVTADEV 236
                 578888888887754 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 8
      HTH_31  18 eevAerlgvse 28 
                 +e+A+++ v +
  KIR65816.1 269 DEAADLISVAA 279
                 45555554443 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 3.1
      HTH_31  17 qeevAerlg.................vsestlsr 33 
                 ++e+A+ +g                 +s+s ++r
  KIR65816.1 310 RAEAAAVAGdagrvlklsalvppvptISKSAWRR 343
                 5566665555557777777777777777777776 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.4
      HTH_31  28 estlsrlEqGrrgrpspavlealaralg 55 
                 ++ +  + +Grr r   + l+ l+++ g
  KIR65816.1 383 RDIVESIATGRR-RAMTDELTDLVDLMG 409
                 455566778888.677888888887776 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.4   5.6e-15   7.8e-12       1      53 [.      10      63 ..      10      65 .. 0.96

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 5.6e-15
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvsld 53
                l+e+R +  l+qe+LAe++Gvs+  i+++E G +   +l+tl +la+aLgv+++
  KIR65816.1 10 LAEIRRESRLTQEQLAERSGVSVEVIRKLEQGsRGTARLDTLHALARALGVPTS 63
                689************************************************986 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.3e-12   1.8e-09       1      61 [.       7      67 ..       7      70 .. 0.97

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.3e-12
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyllq 61
                G+rL e+R+e  ltqe+laer g+s   i+++E g++ ++  ++l ++a+alg+++ +ll 
  KIR65816.1  7 GDRLAEIRRESRLTQEQLAERSGVSVEVIRKLEQGSRGTARLDTLHALARALGVPTSALLG 67
                89********************************************************995 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   3.3e-08   4.5e-05       1      58 [.       9      66 ..       9      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3.3e-08
      HTH_26  1 kLrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLl 58
                +L e+ ++ ++t+ +La+++g+s   + +l +g   + +ldtL ++++aLg+  + Ll
  KIR65816.1  9 RLAEIRRESRLTQEQLAERSGVSVEVIRKLEQGSRGTARLDTLHALARALGVPTSALL 66
                7899999***************************99***************9877665 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   2.2   3.1e-06    0.0042       1      33 [.       9      41 ..       9      65 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.1e-06
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHCT CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEed 33
                rL + R++ +l+ e++a++  ++++++++lE++
  KIR65816.1  9 RLAEIRRESRLTQEQLAERSGVSVEVIRKLEQG 41
                6999***************************98 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   3.2e-06    0.0044       9      31 ..      10      32 ..      10      37 .. 0.91
   2 ?   -1.6   0.0       1.5     2e+03      22      33 ..      53      64 ..      50      66 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.2e-06
      HTH_24  9 LelLqknprisqreLAerlglSp 31
                L ++++++r++q +LAer+g+S+
  KIR65816.1 10 LAEIRRESRLTQEQLAERSGVSV 32
                789*******************8 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.5
      HTH_24 22 eLAerlglSpst 33
                 LA++lg++ s+
  KIR65816.1 53 ALARALGVPTSA 64
                79*****99987 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.4e-05     0.019      23      72 ..      10      59 ..       3      61 .. 0.95
   2 ?   -1.5   0.2       1.8   2.5e+03      14      45 ..     165     197 ..     155     199 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.4e-05
                HHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTT CS
      HTH_37 23 iaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalG 72
                +ae++++ +l+q+++a++ g++   + +l++g   + +ld+L  l+ alG
  KIR65816.1 10 LAEIRRESRLTQEQLAERSGVSVEVIRKLEQGSRGTARLDTLHALARALG 59
                8999*********************************************9 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.8
                 HHHHHHHHH.HHHHHHHCT--HHHHHHHHT--H CS
      HTH_37  14 kaKaqlala.iaeliekrelsqseaaqllgiaq 45 
                  a+aq ++  +  ++++ +l+q+ + ++l +aq
  KIR65816.1 165 LARAQHLAGgLLIQLRSDDLAQTALSEALDTAQ 197
                 455555444544456678999999999998887 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00049      0.68       4      21 ..      23      40 ..      22      41 .. 0.94
   2 ?    0.8   0.0      0.31   4.3e+02       5      16 ..      54      65 ..      52      66 .. 0.91
   3 ?   -0.7   0.0      0.88   1.2e+03       1      12 [.     221     232 ..     221     234 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00049
                HHHHHHTTTHHHHHHHHH CS
        MerR  4 evAeltGvsprtLRyYEr 21
                ++Ae++Gvs+  +R +E+
  KIR65816.1 23 QLAERSGVSVEVIRKLEQ 40
                89************9996 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.31
                HHHHHTTTHHHH CS
        MerR  5 vAeltGvsprtL 16
                +A+++Gv++++L
  KIR65816.1 54 LARALGVPTSAL 65
                79*******997 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.88
                 EHHHHHHHHTTT CS
        MerR   1 tIgevAeltGvs 12 
                 +I+e+Ael+ v+
  KIR65816.1 221 RIREAAELAVVT 232
                 69*****98777 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.37   5.1e+02      30      55 ..      32      58 ..      31      59 .. 0.84
   2 ?   -3.2   0.0       7.8   1.1e+04      29      51 ..      70      92 ..      66      93 .. 0.69
   3 ?   -3.4   0.1       9.3   1.3e+04      56      65 ..     127     136 ..     119     137 .. 0.67
   4 ?    1.3   0.1      0.31   4.3e+02      37      59 ..     153     173 ..     146     174 .. 0.73
   5 ?   14.8   1.7   1.9e-05     0.026       2      67 ..     165     228 ..     164     229 .. 0.94
   6 ?    0.1   0.2      0.71   9.9e+02      46      67 ..     253     274 ..     247     287 .. 0.78
   7 ?    3.8   0.4     0.052        72      48      70 ..     345     367 ..     342     370 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.37
      TPR_12 30 leiarrl.lGpdhpltattlrnLgrly 55
                +e++r+l +G    + + tl++L+r++
  KIR65816.1 32 VEVIRKLeQGSRGTARLDTLHALARAL 58
                577777779999999*********986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.8
      TPR_12 29 aleiarrllGpdhpltattlrnL 51
                + ++a+  +G+  + +a+++r +
  KIR65816.1 70 SQAAAQGEPGHRQLSLAEIRRVI 92
                55667888888888888777665 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 9.3
      TPR_12  56 ralgryeeAl 65 
                 + +g+y+ Al
  KIR65816.1 127 YSAGDYAVAL 136
                 4677777776 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.31
      TPR_12  37 lGpdhpltattlrnLgrlyralg 59 
                  G+++   a+++  L+r+++++g
  KIR65816.1 153 AGDER--RAEAYDLLARAQHLAG 173
                 45555..8999999999988776 PP

  == domain 5  score: 14.8 bits;  conditional E-value: 1.9e-05
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlel 67 
                 +a+a++  + +l +l   d A++ l +al+ a+r+  +d+  +at+ r++ +l+ ++gr +eA el
  KIR65816.1 165 LARAQHLAGGLLIQLRSDDLAQTALSEALDTAQRS--GDRVVAATVIRTMCWLLMRQGRIREAAEL 228
                 68899899999999999******************..9*************************987 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.71
      TPR_12  46 ttlrnLgrlyralgryeeAlel 67 
                 + l   + + ++ +r++eA +l
  KIR65816.1 253 WLLLSAAAARSRDNRPDEAADL 274
                 5667777777888888888876 PP

  == domain 7  score: 3.8 bits;  conditional E-value: 0.052
      TPR_12  48 lrnLgrlyralgryeeAlellee 70 
                 + +L+++y +l ry +A + l++
  KIR65816.1 345 RLDLAWAYAELRRYGKATAVLTQ 367
                 679**************988876 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.7   0.00014      0.19      16      41 ..      14      39 ..      12      43 .. 0.90
   2 ?   -1.2   0.0       1.1   1.5e+03      22      35 ..      50      63 ..      49      64 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
                HHTTT--HHHHHHHHTS-HHHHHHHH CS
  Sigma70_r4 16 rfgeglTleEIgerlgiSrerVrqie 41
                r++  lT+e+++er g+S e +r +e
  KIR65816.1 14 RRESRLTQEQLAERSGVSVEVIRKLE 39
                667789*****************998 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.1
                -HHHHHHHHTS-HH CS
  Sigma70_r4 22 TleEIgerlgiSre 35
                Tl+ +++ lg++ +
  KIR65816.1 50 TLHALARALGVPTS 63
                8999*******975 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.4    0.0018       2.5      17      43 ..      12      37 ..       9      37 .. 0.91
   2 ?    1.7   0.0      0.14     2e+02      17      31 ..     282     296 ..     277     306 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0018
                SS-TTSB---HHHHHHHHTS-HHHHHH CS
        GntR 17 elrpGdkLPsereLaaefgVsrttvRe 43
                e+r +++L ++++La++ gVs  ++R+
  KIR65816.1 12 EIRRESRL-TQEQLAERSGVSVEVIRK 37
                678899**.****************96 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.14
                 SS-TTSB---HHHHH CS
        GntR  17 elrpGdkLPsereLa 31 
                  +r G++ P+e++L+
  KIR65816.1 282 AVRIGERVPAEKQLM 296
                 5789*********97 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.3   5.9e+03      12      22 ..     127     137 ..     122     138 .. 0.83
   2 ?   -1.2   0.1       2.2   3.1e+03       2      29 ..     167     194 ..     166     196 .. 0.80
   3 ?    4.3   0.0     0.037        51       6      23 ..     211     228 ..     206     229 .. 0.84
   4 ?   -2.2   0.0       4.7   6.5e+03      10      23 ..     261     274 ..     254     279 .. 0.74
   5 ?    6.3   0.0    0.0086        12       7      26 ..     348     367 ..     346     374 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.3
       TPR_2  12 yklgdyeeAle 22 
                 y +gdy+ Al+
  KIR65816.1 127 YSAGDYAVALR 137
                 6789**99986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.2
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                 +a +  G ++++l   + A  a+ +Al 
  KIR65816.1 167 RAQHLAGGLLIQLRSDDLAQTALSEALD 194
                 6677778888888888999999999985 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.037
       TPR_2   6 nlGlayyklgdyeeAlea 23 
                  + ++++++g+  eA+e+
  KIR65816.1 211 TMCWLLMRQGRIREAAEL 228
                 57799**********985 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 4.7
       TPR_2  10 ayyklgdyeeAlea 23 
                 a  + ++++eA+++
  KIR65816.1 261 ARSRDNRPDEAADL 274
                 55567889999875 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.0086
       TPR_2   7 lGlayyklgdyeeAleafek 26 
                 l++ay++l +y +A + + +
  KIR65816.1 348 LAWAYAELRRYGKATAVLTQ 367
                 9*************887765 PP

>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       4.1   5.7e+03      72      91 ..      22      41 ..       5      58 .. 0.58
   2 ?    0.1   0.1      0.79   1.1e+03      29      68 ..     129     168 ..     112     184 .. 0.73
   3 ?   10.8   1.1   0.00038      0.53      13      67 ..     183     237 ..     175     315 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.1
                HHHHHCTTCEEEEEEEESSH CS
         Usp 72 kaaaeaggvkvevvveegdp 91
                +++ae  gv+vev+++  ++
  KIR65816.1 22 EQLAERSGVSVEVIRKLEQG 41
                34555556666655554444 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.79
                 CTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHH CS
         Usp  29 rgaelillhvidprasgavsdadeeaeeeeleleeaelea 68 
                  g+  ++l+v++p  ++++++ d +  e ++e     ++a
  KIR65816.1 129 AGDYAVALRVVPPLLMDMRAAVDLAGDERRAEAYDLLARA 168
                 4445788999999999999988888887777766655554 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00038
                 HHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHH CS
         Usp  13 eeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaele 67 
                 + ++ Al  Al+ a+++g+++++++vi ++      +++  ++ e ++ +++e e
  KIR65816.1 183 DLAQTALSEALDTAQRSGDRVVAATVIRTMCWLLMRQGRIREAAELAVVTADEVE 237
                 6789***********************9987777777777777777666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3081.53
//
Query:       KIR65817.1  [L=400]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-09   36.5   3.0    4.4e-09   36.5   3.0    5.1  4  HTH_31    Helix-turn-helix domain
    0.00063   19.8   0.0       0.01   15.9   0.0    2.5  2  HTH_3     Helix-turn-helix
  ------ inclusion threshold ------
      0.099   12.7   0.0        0.2   11.7   0.0    1.6  1  HTH_19    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   3.0   7.4e-13   4.4e-09       3      59 ..      10      66 ..       8      70 .. 0.94
   2 ?    2.0   0.3     0.044   2.6e+02      39      58 ..     211     231 ..     203     237 .. 0.77
   3 ?   -3.9   4.2         3   1.8e+04      53      53 ..     342     342 ..     292     369 .. 0.55
   4 ?    0.3   0.1      0.15   8.9e+02      42      57 ..     385     400 .]     377     400 .] 0.76

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 7.4e-13
      HTH_31  3 GalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpa 59
                G++++ +R r++Lsq+  A+rlg s+s++ ++E+G r + + ++l  +a +l+ d a
  KIR65817.1 10 GRRVAYWRGRRRLSQQVFADRLGKSKSWVDKVERGVRSLDRVSTLHDVAAVLRIDAA 66
                999999********************************99************99876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.044
      HTH_31  39 rgrpspavlealaralgl.dp 58 
                 +gr++ a  +ala a++  +p
  KIR65817.1 211 CGRVRAALSTALAAAYRIaPP 231
                 668999999999999997344 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 3
      HTH_31  53 a 53 
                 a
  KIR65817.1 342 A 342
                 1 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.15
      HTH_31  42 pspavlealaralgld 57 
                   pa++ +la alg++
  KIR65817.1 385 HAPATIVQLAAALGVT 400
                 6789999999999985 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.7e-06      0.01       4      50 ..      16      63 ..      13      68 .. 0.76
   2 ?    1.1   0.0      0.07   4.2e+02      40      51 ..     389     400 .]     386     400 .] 0.71

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.7e-06
                HHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCS.BHHHHHHHHHHHTS CS
       HTH_3  4 lRkqlglsqeeLAeklGvsrstisriEnGernP.sletlkklakaLgv 50
                +R  + lsq+ +A++lG s+s + + E+G r+  +++tl  +a +L +
  KIR65817.1 16 WRGRRRLSQQVFADRLGKSKSWVDKVERGVRSLdRVSTLHDVAAVLRI 63
                677889***********************6654145666666666655 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.07
                 HHHHHHHHHTSE CS
       HTH_3  40 tlkklakaLgvs 51 
                 t++ la aLgv+
  KIR65817.1 389 TIVQLAAALGVT 400
                 777788888875 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.4e-05       0.2       1      60 [.      10      69 ..      10      74 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.4e-05
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aelllkiaealgidleyll 60
                G+r+   R  + l+q+  a+rlg s+s   + E g +  ++  ++l ++a  l id+  ll
  KIR65817.1 10 GRRVAYWRGRRRLSQQVFADRLGKSKSWVDKVERGVR-SLDrVSTLHDVAAVLRIDAAVLL 69
                8999999****************************99.77768888888888877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2935.30
//
Query:       KIR65818.1  [L=79]
Description: hypothetical protein TK50_10920 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 572.96
//
Query:       KIR65819.1  [L=121]
Description: hypothetical protein TK50_10925 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0015   19.2   1.7     0.0027   18.3   1.7    1.5  1  SnoaL_2   SnoaL-like domain
  ------ inclusion threshold ------
      0.059   13.5   0.0       0.07   13.3   0.0    1.2  1  SnoaL_4   SnoaL-like domain


Domain annotation for each model (and alignments):
>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   1.7     3e-07    0.0027       2      62 ..      21      78 ..      20     117 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3e-07
                HHHHHHHHTTCHHHHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEE CS
     SnoaL_2  2 raflaalnagdldalaalfapdvvwedpggelrGreairaffralfaafpdlrfeihdvva 62
                r fl a +a+  ++ a  fa+d+v++d g ++rG e++r ++       ++++++ + v a
  KIR65819.1 21 RGFLPAHEARETETTAGAFAADAVVTDEGRSYRGAEEVRNWLVNGG---SGYTYTTEFVGA 78
                78999999*********************************99998...566666666522 PP

>> SnoaL_4  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.8e-06      0.07      16      77 ..      23      81 ..      15     102 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.8e-06
                HHHHHHTT-HHHHHTTEEEEEEEEETTS..--EESHHHHHHHHHSHHHHHH-EEEEE---EE CS
     SnoaL_4 16 ygyylDtkdweeladlFtedavvdytgvgegvlegrdairaalrealdgfaltqHllsnpli 77
                +  ++ +++ e +a  F++davv   g     ++g++++r++l++   g+  t+ +++++++
  KIR65819.1 23 FLPAHEARETETTAGAFAADAVVTDEG---RSYRGAEEVRNWLVNGGSGYTYTTEFVGAHRV 81
                566777889999**********97776...59*************98888877777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 894.86
//
Query:       KIR65820.1  [L=279]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-48  164.8   0.0      2e-48  164.4   0.0    1.1  1  adh_short       short chain dehydrogenase
    1.3e-39  136.2   0.0    1.6e-39  135.9   0.0    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    1.4e-13   51.1   0.0      2e-13   50.7   0.0    1.2  1  KR              KR domain
    7.6e-06   25.9   0.1     0.0011   18.9   0.0    2.3  2  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.4   0.0   4.5e-52     2e-48       2     186 ..       3     185 ..       2     193 .. 0.96

  Alignments for each domain:
  == domain 1  score: 164.4 bits;  conditional E-value: 4.5e-52
                 EEEEESTT.SHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   2 vvlvtGas.sGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 + ++tG++ +G+G a+a++ + +G +v+++ r++e+le +a + ++   ++l++++Dvtdr++ve++v++ ++++g++dvLvnNAG  + g+++ + ++
  KIR65820.1   3 TWFITGGTpGGFGMAYAEAALDDGDRVALTTRRPEELEPWARQYGD---RVLILPADVTDRKAVEQAVRATEEHFGSIDVLVNNAGRGWYGSIEGMADA 98 
                 56899998578********************************997...6************************************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdm 186
                 e++r++e+N+++v+ ++ravlp m ++ +G Ivn+sSvag+ +v+g+  YsA+K a+++ t+ l+ e+ap gi+v+av PG+++T  
  KIR65820.1  99 EVRRIFELNFFAVLTVIRAVLPGMRARGGGWIVNMSSVAGLRGVEGFGYYSAAKSALEAVTEVLRAEVAPLGIQVMAVEPGAFRTRA 185
                 ************************************************************************************986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   0.0   3.5e-43   1.6e-39       4     203 ..      12     209 ..       8     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 3.5e-43
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdra 98 
                    g G a A+a+ + G +v+lt ++ e+   +e+ a+++g +v  l++DVtd+++ve++v++++e+fg++D+lvnnag      g+++ + ++e++r+
    KIR65820.1  12 GGFGMAYAEAALDDGDRVALTTRRPEE---LEPWARQYGDRVliLPADVTDRKAVEQAVRATEEHFGSIDVLVNNAGRGWY--GSIEGMADAEVRRI 103
                   599**********************99...9********99667*************************************..************** PP

                   HHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHH CS
  adh_short_C2  99 ldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleele 193
                   ++ n+ +++ +++a+lp + ++g g ivn+ssv++ r+v++   y+aaK alea+t  l +e++p gi+v av pg+ +T+a +g++  ++++e + 
    KIR65820.1 104 FELNFFAVLTVIRAVLPgMRARGgGWIVNMSSVAGLRGVEGFGYYSAAKSALEAVTEVLRAEVAPLGIQVMAVEPGAFRTRAYAGFA-DEAVEETIP 199
                   *****************655555799***********************************************************98.577888777 PP

                   HHSTTSS-B- CS
  adh_short_C2 194 araplgrlgt 203
                      p+ + ++
    KIR65820.1 200 TYLPMLEKVR 209
                   7777766555 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   4.4e-17     2e-13       2     169 ..       3     168 ..       2     182 .. 0.88

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 4.4e-17
                 EEEEETTT.SHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT CS
          KR   2 tylitGGl.GgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkllee 99 
                 t +itGG+ Gg+G++ a+  +++g r ++l++R++      ++l    +++g +v +++aDv+d++ave+++++ ++++++i   ++ Ag    + +e 
  KIR65820.1   3 TWFITGGTpGGFGMAYAEAALDDGDR-VALTTRRP------EELEPWARQYGDRVLILPADVTDRKAVEQAVRATEEHFGSIDVLVNNAGRGWYGSIEG 94 
                 5789**9889**************75.89999992......2333445678************************************************ PP

                 --HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHT CS
          KR 100 mtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglp 169
                 m +++++++++  + ++  + +++ +    +   ++v +SS+agl g  g + Y+aa + l+a+ e  r++ +p
  KIR65820.1  95 MADAEVRRIFELNFFAVLTVIRAVLPgmraRGGGWIVNMSSVAGLRGVEGFGYYSAAKSALEAVTEVLRAEVAP 168
                 ************9999988888776667668889*******************************999987665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.5e-07    0.0011       4     101 ..      12     138 ..       8     198 .. 0.68
   2 !    5.2   0.0    0.0039        18      73     105 ..     222     254 ..     204     272 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.5e-07
                     SHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT..TTCEEEE--TT-CCHHHHHHT.......T-SEEEES---TCC.......HHHH..... CS
  NAD_binding_10   4 GkvGrllvkellargghevtalvRnpeklaeleae..eglevvegdvtdvedlaealk.......gadaVvsalggggk.......deeg..... 77 
                     G+ G + ++ +l++g  +v + +R+pe+l+  +++  +++ ++ +dvtd +++++a++        +d+ v ++g+g+        d+e+     
      KIR65820.1  12 GGFGMAYAEAALDDG-DRVALTTRRPEELEPWARQygDRVLILPADVTDRKAVEQAVRateehfgSIDVLVNNAGRGWYgsiegmaDAEVrrife 105
                     899999********6.8************977655448999999*************97777777778888888777655544444333355566 PP

                     .........HHHHHHHHHHCT--EEEEEEETTT CS
  NAD_binding_10  78 .........aknivdaakeagvkRfvlvsaigv 101
                               ++++  +++ g   +v +s++  
      KIR65820.1 106 lnffavltvIRAVLPGMRARGGGWIVNMSSVAG 138
                     666666666666666677777666666666543 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0039
                     CHHHHHHHHHHHHHHCT--EEEEEEETTTTSGC CS
  NAD_binding_10  73 kdeegaknivdaakeagvkRfvlvsaigvgdev 105
                     + ++ga+++++a+ ++   R ++++++g +  v
      KIR65820.1 222 DPRRGARAVIAAMGQETPPRRLVLGSAGFDAVV 254
                     25667**********999999999999988644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1940.49
//
Query:       KIR65821.1  [L=204]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-17   61.2   0.2      2e-16   59.5   0.0    2.0  2  TetR_N       Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.052   13.7   0.0      0.087   13.0   0.0    1.3  1  HTH_Tnp_1_2  Helix-turn-helix of insertion element transposas


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   2.3e-20     2e-16       1      45 [.      19      63 ..      19      64 .. 0.96
   2 ?   -1.8   0.0      0.32   2.8e+03      31      38 ..      88      95 ..      86      96 .. 0.86

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 2.3e-20
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLle 45
                I daA  lf  rG+d+++v++IA+ A vsk++l+ryFp+Ke+L++
  KIR65821.1 19 IADAAISLFLARGFDQVSVSDIAATAEVSKPTLFRYFPTKEDLVL 63
                679****************************************96 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.32
                HHHHHHTS CS
      TetR_N 31 galYryFp 38
                +al+++F+
  KIR65821.1 88 AALHQHFR 95
                799****7 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.7e-06     0.087      14      52 ..      22      61 ..      10      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.7e-06
                 HHHHHHHHHHH--S-HHHHHHHHTS-HHHHHHHH.H-HHH CS
  HTH_Tnp_1_2 14 kaaellvendyekltldeiaeevgvsrsTlykWk.kkkeF 52
                  a+ l   + ++++++++ia+   vs+ Tl+++   k++ 
   KIR65821.1 22 AAISLFLARGFDQVSVSDIAATAEVSKPTLFRYFpTKEDL 61
                 57889999************************98666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1383.61
//
Query:       KIR65822.1  [L=281]
Description: NmrA family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-24   86.3   1.3    3.4e-24   85.8   1.3    1.2  1  NAD_binding_10  NAD(P)H-binding
    9.3e-23   81.0   0.0    2.4e-22   79.6   0.0    1.6  1  NmrA            NmrA-like family
    2.7e-07   30.3   0.3    1.1e-06   28.3   0.1    2.0  2  Epimerase       NAD dependent epimerase/dehydratase family
     0.0016   17.9   0.0     0.0097   15.3   0.0    1.9  2  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
      0.009   15.5   0.3      0.017   14.6   0.3    1.5  1  adh_short       short chain dehydrogenase
     0.0093   15.1   0.2       0.17   11.0   0.1    2.2  2  RmlD_sub_bind   RmlD substrate binding domain
  ------ inclusion threshold ------
      0.029   13.4   0.0      0.041   12.9   0.0    1.2  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
       0.04   14.2   0.1        0.1   12.8   0.1    1.7  1  TrkA_N          TrkA-N domain
      0.068   13.3   0.1       0.13   12.4   0.1    1.6  1  DapB_N          Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   1.3   1.7e-27   3.4e-24       1     182 [.       5     180 ..       5     182 .. 0.82

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 1.7e-27
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHHHHHHHHHHHHCT--EEEE CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeegaknivdaakeagvkRfvl 95 
                     GAtG++Gr++v+ l  + g++v+alvR++e++a l+  +g+evv+gd+t + +l +al g+ aV+    +  +   +a ++vd + +a+ +R+v+
      KIR65822.1   5 GATGRIGRAVVDLLTGA-GVPVRALVRRAESAATLP--AGVEVVTGDLTAPGSLDAALHGVGAVFLVWTAPPQ---TAPAVVDRL-AAHARRVVY 92 
                     9****************.5**************997..8*****************************98774...799999999.6789***** PP

                     EEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE-ST--SEEEE........ETTSS----EEEHHHHHHHHHHHCT CS
  NAD_binding_10  96 vsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggLtdepttkyrvv........ekgepfkggsisradVAdvlvavld 182
                     +sa + +   p++f +      ++++a ++  e+l+ a+gld Tivrpg++  ++ + + ++          +   +++ +  +dVA+v++++l 
      KIR65822.1  93 LSAPHRT---PHPFFQQ----PNPMAALHAGNERLIAATGLDATIVRPGMFASNALSWWAAAirgdgvvrWPHGAAETAPVDDRDVAEVVARILR 180
                     ***9977...5666554....45667889999*******************88774433333111111113344556789************997 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   1.2e-25   2.4e-22       2     232 ..       2     217 ..       1     218 [. 0.87

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 1.2e-25
                 EESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GGS-HHHHHHHHHHHHHHHS-SEEEEE CS
        NmrA   2 lviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfyskeiedgkklvdAakeaGvkhfiyS 100
                 lv+GaTGr+G++vv+ l+ ag +vralvR  +s   ++l  aGve+v gdl    sl++al+gv +vf+v +   +  +   ++vd   +a  ++++y 
  KIR65822.1   2 LVTGATGRIGRAVVDLLTGAGVPVRALVRRAESA--ATL-PAGVEVVTGDLTAPGSLDAALHGVGAVFLVWT---APPQTAPAVVDR-LAAHARRVVYL 93 
                 8****************************87665..455.58*****************************9...555556666664.456689***** PP

                 E---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHHHHHHHH CS
        NmrA 101 slgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvikilkdprk 199
                 s +    +   ++p  p+ +  a  e+ + a g+ +t+v++g+f++n ls +a     + + ++  v+++  g ++ +++ +++D++++v+ il +   
  KIR65822.1  94 SAPHRTPHPFFQQP-NPMAALHAGNERLIAATGLDATIVRPGMFASNALSWWAA----AIRGDG-VVRWPH-GAAETAPV-DDRDVAEVVARILREGGH 184
                 *9999977766665.5788888999*************************9999....556665.566664.44467777.****************** PP

                 HTTEEEEE-SEEE-HHHHHHHHHHHHTS-EEEE CS
        NmrA 200 lkgkriklagntlsgneivelfekkigktvkYt 232
                 + g ++    + l+  e v++   ++g++ +++
  KIR65822.1 185 VGGDHVLTGPESLTQAEQVRIVGDALGRRLTFE 217
                 ****************************98886 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   5.6e-10   1.1e-06       1      71 [.       1      68 [.       1      91 [. 0.86
   2 ?   -0.4   0.0      0.33   6.6e+02     183     228 ..     138     181 ..     112     192 .. 0.68

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 5.6e-10
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE- CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihl 71
                +lVtGatG iG+a+v+ l  +g+ v +l r+ ++    + + +e+v++dlt + +l+++++  ++ av+++
  KIR65822.1  1 MLVTGATGRIGRAVVDLLTGAGVPVRALVRRAESA-ATLPAGVEVVTGDLTAPGSLDAALH--GVGAVFLV 68
                69*****************************5444.4566777***************999..77777765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.33
                 TSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 183 srvipalirkilegkqevtllgdgtalRdflyveDvaeaillvleh 228
                 s+ ++ +++ i  g   v+ +  g a    ++ +Dvae++ ++l++
  KIR65822.1 138 SNALSWWAAAIR-GD-GVVRWPHGAAETAPVDDRDVAEVVARILRE 181
                 444555555553.44.677788888888888888888888888887 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.9e-06    0.0097       1      36 [.       2      37 ..       2      62 .. 0.88
   2 ?    0.2   0.0      0.19   3.8e+02     227     283 ..     169     227 ..     168     260 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.9e-06
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TT CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfnt 36
                   L+TG +G iG  +++lL   g  v  +vrr++s +t
     KIR65822.1  2 LVTGATGRIGRAVVDLLTGAGVPVRALVRRAESAAT 37
                   9*****************************998764 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.19
                    HHHHHHHHHHHHC..SS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH.......... CS
  GDP_Man_Dehyd 227 kDyveamwlmlqq..dkpedyviatgethsvrefvelaflelgktiewegkgeeevgra 283
                    +D++e++ ++l++      d+v+   e+ +  e v++   +lg+++++e+   +e  +a
     KIR65822.1 169 RDVAEVVARILREggHVGGDHVLTGPESLTQAEQVRIVGDALGRRLTFEEMTPDEFRNA 227
                    68999999999883233589999999999999****99999999999998777775533 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3   8.6e-06     0.017       3      69 ..       1      60 [.       1      66 [. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.6e-06
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealve 69
                +lvtGa++ IGra+++ l  +G+ v ++ r++e ++++ +        + ++++D+t   +++a++ 
  KIR65822.1  1 MLVTGATGRIGRAVVDLLTGAGVPVRALVRRAESAATLPAG-------VEVVTGDLTAPGSLDAALH 60
                59*************************88888877555444.......5567777777777777665 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   8.4e-05      0.17       3      47 ..       1      59 [.       1      89 [. 0.77
   2 ?    2.1   0.0     0.042        84     182     258 ..     164     239 ..     153     258 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.4e-05
                   EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT..............T--TTSHHHHHHHH CS
  RmlD_sub_bind  3 ilvtGanGqlGseLakqlaeeglevlaltre..............eldltdaeavaell 47
                   +lvtGa+G +G++++++l+ +g+ v al r+              + dlt + +++++l
     KIR65822.1  1 MLVTGATGRIGRAVVDLLTGAGVPVRALVRRaesaatlpagvevvTGDLTAPGSLDAAL 59
                   59**************************7765666666666666666666666666555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.042
                    --EEHHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHCHTT..SEEEEE-CCCS--SS---SBE-B CS
  RmlD_sub_bind 182 sPTsardlAevllqllekaaeekelagvyHlanegetswlefArailkeagads..eevkpistaeyptpAkRPanSvL 258
                    +P   rd+Aev++ +l++  +   + g   l++ ++++++e+ r + +++g +   ee++p +  ++  +A RPa  +L
     KIR65822.1 164 APVDDRDVAEVVARILREGGH---VGGDHVLTGPESLTQAEQVRIVGDALGRRLtfEEMTPDEFRNAVPEAARPAVDML 239
                    577889999999999999997...6677778999999**9999999999998778899999999999999999987655 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     2e-05     0.041       1      73 [.       2      68 ..       2      81 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2e-05
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihl 73
                +vtG++G +Gra+v  L  ++    vr+l  r ++     +   +v+ v++gD+t   +l++al+gv +v+ +
  KIR65822.1  2 LVTGATGRIGRAVVDLLTGAG--VPVRALVRRAESA---ATLPAGVE-VVTGDLTAPGSLDAALHGVGAVFLV 68
                69***************9999..5889885555544...47888888.99*****************999876 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   5.2e-05       0.1       6      58 ..       7      58 ..       1      72 [. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.2e-05
                -SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHT CS
      TrkA_N  6 lGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgdatdeevLeea 58
                 Gr+Gr++++ L+ +g +v +  ++ e +++l   g+evv gd t +  L++a
  KIR65822.1  7 TGRIGRAVVDLLTGAGVPVRALVRRAESAATL-PAGVEVVTGDLTAPGSLDAA 58
                69************665699999999999998.59************999987 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   6.3e-05      0.13       4      37 ..       2      34 ..       1      91 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.3e-05
                EEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCS CS
      DapB_N  4 avvGasGrmGkevvkaveeaedlelvaavdrkes 37
                +v+Ga+Gr+G++vv++++  +++ + a v r es
  KIR65822.1  2 LVTGATGRIGRAVVDLLTG-AGVPVRALVRRAES 34
                69**************999.88888888888774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1857.74
//
Query:       KIR65823.1  [L=130]
Description: hypothetical protein TK50_10950 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-10   41.7   0.2    1.8e-10   41.4   0.2    1.1  1  SnoaL_2   SnoaL-like domain
    0.00016   21.4   0.0    0.00045   20.0   0.0    1.6  1  SnoaL     SnoaL-like polyketide cyclase
     0.0002   21.7   0.0    0.00024   21.4   0.0    1.1  1  DUF4440   Domain of unknown function (DUF4440)


Domain annotation for each model (and alignments):
>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.2     3e-14   1.8e-10       9     101 ..      16     114 ..      10     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 3e-14
                 HTTCHHHHHHTEEEEEEEE....ET.TSEEESHHHHHH.HHHHHHHHEEEEEEEEEEEEEETT.EEEEEEEEEEEEETTSSEEEEEEEEEEEEETTEEE CS
     SnoaL_2   9 nagdldalaalfapdvvwe....dp.ggelrGreaira.ffralfaafpdlrfeihdvvadgd.rvavewtvtgtipatgrgvtvrgvdvfrvrdGkiv 100
                 n+g +d +a l++p++v+      p gg ++G e ++  ff  lf+ f+ +r e ++++ad++ +v+v +++++ + ++g +v  r+++v++v++G++v
  KIR65823.1  16 NSGSPDVAAKLMDPNIVVDitpgYPyGGVFHGYESLMGdFFGPLFQLFGSMRAEADEIYADDQgHVFVLGHYHA-VTKEGVEVASRFAHVWTVENGRLV 113
                 8899*************996665556667*****99999*******************77765499999***97.6666666666************99 PP

                 E CS
     SnoaL_2 101 e 101
                 +
  KIR65823.1 114 R 114
                 7 PP

>> SnoaL  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   7.6e-08   0.00045       9     125 ..      12     127 ..       6     128 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 7.6e-08
                 HHH.HTT-HHHHHGTEEEEEEETCCTT....TCECHHHHHH.HHHHHHHHHCTTCEEEEEEEEEETTEEEEEEEEEEEESSEBTTBE-TT-EEEEEEEE CS
       SnoaL   9 evw.nsgdldaldelvaedvvdhnpee....eparGlegfr.afveelfkafPDlkvevedlvaegdkvaarltftGthtgeflGipptGkkvkfeeit 101
                 e++ nsg +d +++l+++++v   ++     ++ +G e+++ +f+  lf+ f  ++ e ++++a++   +  l       g ++ +   G +v+ +  +
  KIR65823.1  12 ELYaNSGSPDVAAKLMDPNIVVDITPGypygGVFHGYESLMgDFFGPLFQLFGSMRAEADEIYADDQGHVFVL-------GHYHAVTKEGVEVASRFAH 103
                 555699*************99887776577888889888764799999999*999999999999995444433.......567888999********** PP

                 EEEEETTEEEEEEEEECHHHHHHH CS
       SnoaL 102 llrvedGkIveewdviDllgllrQ 125
                 + +ve+G+ v ew+ +D + l + 
  KIR65823.1 104 VWTVENGRLVREWQTADTAVLTQA 127
                 *****************9987765 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   4.1e-08   0.00024      12     104 ..      15     111 ..       7     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 4.1e-08
                 HHCT-HHHHHHCEEEEEEEE.-TT...S-EE.EHHHHHHHHHCCHCE.EEEEEEEEEEEEEE.TTEEEEEEEEEEEECCTTEEEEEEEEEEEEEEEETT CS
     DUF4440  12 fvagdaealaallapdavlv.gps...gtvl.dkeellealeagfaa.grslelteeevrvl.gdlAvvtgrytfegrgdgepvegrgrftsvwrkegg 103
                  ++g+++ +a+l++p++v+  +p+   g v+ ++e+l+  ++ + ++ + s++ +  e++    + ++v g+y++ +++ g  ve+  rf  vw  e+g
  KIR65823.1  15 ANSGSPDVAAKLMDPNIVVDiTPGypyGGVFhGYESLMGDFFGPLFQlFGSMRAEADEIYADdQGHVFVLGHYHAVTKE-G--VEVASRFAHVWTVENG 110
                 6899*************885577777766654***********999955889999999999967799*******99864.4..8999*******99988 PP

                 E CS
     DUF4440 104 g 104
                 +
  KIR65823.1 111 R 111
                 3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 983.90
//
Query:       KIR65824.1  [L=167]
Description: hypothetical protein TK50_10960 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-12   46.5   3.1    8.9e-12   44.7   0.3    2.5  3  MarR_2    MarR family
    3.5e-07   30.0   0.0    1.1e-06   28.5   0.0    1.8  3  MarR      MarR family
    5.6e-07   30.0   0.0    1.1e-06   29.0   0.0    1.5  1  HTH_27    Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.2     7e+03      34      44 ..      20      30 ..      15      33 .. 0.61
   2 !   44.7   0.3   1.5e-15   8.9e-12       2      62 .]      37      97 ..      36      97 .. 0.98
   3 ?    1.8   0.0     0.039   2.3e+02       3      16 ..     129     142 ..     127     151 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.2
                SHHHHHHHHHH CS
      MarR_2 34 sksavsrilkr 44
                 ++a++ +l+r
  KIR65824.1 20 LRAALTARLAR 30
                45666666654 PP

  == domain 2  score: 44.7 bits;  conditional E-value: 1.5e-15
                T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2  2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                glt a++ vL ++  +pg++++ ++l+r+l+ ++s++s  ++r++a+G ver p+p+D+R+
  KIR65824.1 37 GLTEADYAVLVNVSEAPGQRIRSRDLCRALDWERSRLSHQIARMQARGTVERAPCPDDARG 97
                8999********************************************************7 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.039
                 --HHHHHHHHHHHC CS
      MarR_2   3 ltpaqarvLaaLgr 16 
                 ltp q++vL+ +++
  KIR65824.1 129 LTPEQLDVLGDIAD 142
                 69*******98875 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.1   1.2e+04      31      41 ..      22      32 ..      19      34 .. 0.58
   2 !   28.5   0.0   1.8e-10   1.1e-06       1      57 [.      38      96 ..      38      98 .. 0.97
   3 ?   -2.4   0.0      0.77   4.6e+03       1      12 [.     129     140 ..     129     142 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.1
                HHHHHHHHHHH CS
        MarR 31 kstvtrvldrL 41
                 + + r++++L
  KIR65824.1 22 AALTARLARQL 32
                45556666666 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 1.8e-10
                --HHHHHHHHHHHHSTTEEHH..HHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTT CS
        MarR  1 ltltqfviLrilyeqgplsvs..eLakklgvskstvtrvldrLekkGlieRskspeDrR 57
                lt++ + +L++++e +++++   +L ++l  ++s ++ ++ r+  +G +eR ++p+D R
  KIR65824.1 38 LTEADYAVLVNVSEAPGQRIRsrDLCRALDWERSRLSHQIARMQARGTVERAPCPDDAR 96
                899**************999999***********************************9 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.77
                 --HHHHHHHHHH CS
        MarR   1 ltltqfviLril 12 
                 lt+ q+++L  +
  KIR65824.1 129 LTPEQLDVLGDI 140
                 8999**999665 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.9e-10   1.1e-06       1      68 []      38     106 ..      38     106 .. 0.96

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.9e-10
      HTH_27   1 ltrqqalvLhlir.hrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                 lt+ + +vL ++   ++ r + +dlc++l+ e s  s  + ++ ++G ver +++ d r   v lT++G
  KIR65824.1  38 LTEADYAVLVNVSeAPGQRIRSRDLCRALDWERSRLSHQIARMQARGTVERAPCPDDARGFDVVLTAAG 106
                 7889999*99999889999999*********************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1178.98
//
Query:       KIR65825.1  [L=198]
Description: hypothetical protein TK50_10970 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-14   53.5   0.3      3e-14   52.5   0.3    1.6  1  TetR_N     Bacterial regulatory proteins, tetR family
      6e-12   45.5   1.0      6e-12   45.5   1.0    1.6  2  TetR_C_14  MftR C-terminal domain
     0.0007   19.9   4.4     0.0007   19.9   4.4    2.0  2  TetR_C_11  Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
        3.2    8.0  13.1       0.43   10.8   7.1    2.2  2  TetR_C_31  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.3   6.8e-18     3e-14       3      45 ..      21      63 ..      19      65 .. 0.93

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 6.8e-18
                HHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHH CS
      TetR_N  3 daArelfaerGydattvreIAkrAGvskgalYryFpsKeeLle 45
                +aA++l +erG++++tv+ I ++AGvs ++++ yFpsKe+ + 
  KIR65825.1 21 EAALRLAGERGFAKVTVEMISAEAGVSTRTFFNYFPSKEAAVI 63
                8**************************************9655 PP

>> TetR_C_14  MftR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.4   6.1e+03       9      24 ..      60      75 ..      59      78 .. 0.82
   2 !   45.5   1.0   1.3e-15     6e-12      13     109 ..      99     194 ..      88     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.4
                HHHHHTT---GGGHHH CS
   TetR_C_14  9 eAvlafnrvdeeeeee 24
                +Av+a+  ++++e+  
  KIR65825.1 60 AAVIAMPPMPPDEDVT 75
                7999999999999875 PP

  == domain 2  score: 45.5 bits;  conditional E-value: 1.3e-15
                 HTT---GGGHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHH CS
   TetR_C_14  13 afnrvdeeeeeehrrRmrLiltvPaLqAhstlryaawrevvAefvAeRtgtdaddlvprtvaaavlaaalaayeqwladedadlaelLdealdllaa 109
                 +++r+++e+ + h + ++L  ++Pa+ A++   ++  ++ +A  vA+Rtg++++d +pr++a +++aa+++ +e + + ed d + ++++a+  l++
  KIR65825.1  99 DMARHPPERGALH-AMFALGQEHPAVLAAMLAGFEGFQRQLAVTVAARTGEQPHDEMPRLIASLAMAAIRTGMENFTSGEDDDPVPYVERAVTTLRT 194
                 4666666665555.4589999***********************************************************************99986 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   1.7      0.56   2.5e+03      40      71 ..       3      31 ..       1      39 [. 0.70
   2 !   19.9   4.4   1.6e-07    0.0007       2      99 ..      83     177 ..      82     192 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.56
   TetR_C_11 40 rdpelaealrerlleprraalravlrrAvarG 71
                r + l+e++r+   + +r+  +a lr A +rG
  KIR65825.1  3 RTEGLRERRRR---QTHREIQEAALRLAGERG 31
                56667777777...666777777777777777 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 1.6e-07
   TetR_C_11   2 pDtGslrgDLrallralaealaspragallrallaeaqrdpelaealrerlleprraalravlrrAvarGelradadvelvldlllgpll..yrllltg 98 
                  D G++  DL+all +  +  ++p+++ +l+a++a  q++p++ +a+ + +   +r+ + +v    ++ Ge + d  ++l+++l++++++  ++ +++g
  KIR65825.1  83 ADPGDVLLDLIALLLR--DMARHPPERGALHAMFALGQEHPAVLAAMLAGFEGFQRQLAVTVA---ARTGEQPHDEMPRLIASLAMAAIRtgMENFTSG 176
                 68899999****9965..77799**************************78888887777775...678******************998444445555 PP

   TetR_C_11  99 e 99 
                 e
  KIR65825.1 177 E 177
                 5 PP

>> TetR_C_31  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2      0.16   7.3e+02      36      65 ..       3      30 ..       1      54 [. 0.59
   2 ?   10.8   7.1   9.7e-05      0.43       6     103 ..      89     191 ..      83     197 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.16
                CSCHHHHHHHHHHHHHHHHHHHHHHHHCSS CS
   TetR_C_31 36 rrPeLraalarlrralrealaallaalGlp 65
                r + Lr+  +r  ++ re  +a+l+ +G  
  KIR65825.1  3 RTEGLRERRRR--QTHREIQEAALRLAGER 30
                55566665444..44555556666666654 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 9.7e-05
                 HHHHHHHHCCCCCTTHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH.HHHHHHHHHCS.S-HHHHHHHHHHHH.HHHH...HHHHHSG.TS-HHHHH CS
   TetR_C_31   6 ladlladlldraladrertlAryelfleaarrPeLraalarlrralre.alaallaalGl.pdpeeaarllvaal.dGll...ldrLagp.aadpraev 97 
                 l dl+a ll+++++++ +  A++++f   + +P++ aa+ ++++++ + +++++ a+ G  p++e  + +l+a l   ++   ++  + + ++dp ++v
  KIR65825.1  89 LLDLIALLLRDMARHPPERGALHAMFALGQEHPAVLAAMLAGFEGFQRqLAVTVAARTGEqPHDE--MPRLIASLaMAAIrtgMENFTSGeDDDPVPYV 185
                 67899999999999*****************************9997736677777888866555..44444443122221113444555667777777 PP

                 HHHHHH CS
   TetR_C_31  98 rellra 103
                 +++++ 
  KIR65825.1 186 ERAVTT 191
                 777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1474.98
//
Query:       KIR65826.1  [L=374]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-20   73.8   5.5      4e-19   69.1   5.5    2.5  1  FAD_binding_3   FAD binding domain
    9.3e-06   25.8   0.3    2.3e-05   24.5   0.3    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00096   18.8   0.3     0.0021   17.7   0.3    1.7  1  DAO             FAD dependent oxidoreductase
     0.0013   18.0   0.2     0.0029   16.9   0.1    1.6  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.014   14.5   0.2      0.024   13.7   0.2    1.4  1  FAD_binding_2   FAD binding domain
      0.072   13.7   0.2       0.18   12.4   0.2    1.7  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      0.081   12.2   0.1       0.13   11.4   0.1    1.3  1  Thi4            Thi4 family
       0.16   11.9   0.0       0.42   10.6   0.0    1.7  2  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   5.5   1.8e-22     4e-19       3     336 ..       2     330 ..       1     341 [. 0.71

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 1.8e-22
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEE..HHH.HHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHHCHHC CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradgln..qrt.mellrqlGledrilaegapnelmgealynelsdtpkaradleless 95 
                     V+IVG+G  Gl+la++L+++G++ v+ e+ ++++  p+++ l+  +++  + l ++Gl+  +++ ++p+   ++    +       r+ ++ + s
     KIR65826.1   2 RVAIVGGGMGGLTLARILHRHGIDAVVYERDASRSARPQGGSLDlhPESgQRALAEAGLAGGFRSAARPEGE-EHRILDP-----AGRTLVHHRPS 91 
                    69************************************998864225443799**************77664.4444444.....45555553455 PP

                    ST-CEE--H..HHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGG.EEEEEEEEEEEEE CS
  FAD_binding_3  96 pervtvypq..teleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgie.fegeetvyeagvl 188
                    p + +  p     ++r+L+ + +  g +v ++++++   ++  +v    +  ++g +    ++ lvGaDG+rS vr  l    ++   tv+e+g+ 
     KIR65826.1  92 PGSFSGRPEidRSVLRDLLLD-SLPGGTVAWQRQLV--AATPRSVGGFELTFADGHR--AGCDVLVGADGARSVVRPLLTDArLSHVATVVELGIS 182
                    555555543113355555555.4556********99..7777888787777777766..89****************998776899999******* PP

                    EEEEEC.-SCCCTTC.CEEEEECCTTEEEEEECCE.TEEEEEEEEECCE-GGGSCCCHHHHHH.......HHHHHHHHTTSSCEEEEEEEEEEEEE CS
  FAD_binding_3 189 dvlfda.dlsdivep.lvlilsaesrgvmviPlen.tlerfyvqvearaekeersekfteeev.......karlreivgektldveieevsawtva 274
                    d+  +  d++++v p +++ +  +       + ++ ++  + v +++ra+++     ++++ +       + rl ++v+ ++ +  ++++++++  
     KIR65826.1 183 DAERRHpDIAELVGPgNFWCIGVNRVL----SAQRlGDGSIRVGISLRADDRPLAHYRSRRALldlfdgwHPRLTALVEASDSPPLPRRIETMPTD 274
                    **************9977776555443....44443444444444444444444444444443000111144555555555556666666666666 PP

                    EEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHH CS
  FAD_binding_3 275 qrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYee 336
                    +r a    +  + l+GDAaH +pP+ G G N a+ Da +La +Laa  +    ++ + +Yee
     KIR65826.1 275 ARWAH---RPGLTLVGDAAHLMPPV-GEGANQAMLDAAELAAALAADPT--DPDAAIRAYEE 330
                    55554...4589************7.89*****************9766..55556666665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.3     1e-08   2.3e-05       1      29 [.       5      33 ..       5      44 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   IvG+G++Gl++A+ L+++g+d +++e+  
     KIR65826.1  5 IVGGGMGGLTLARILHRHGIDAVVYERDA 33
                   9*************************965 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.3   9.5e-07    0.0021       1      30 [.       2      33 ..       2      87 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 9.5e-07
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgd 30
                +v+i+GGG+ Gl+ A+ L r+g   +++e++ 
  KIR65826.1  2 RVAIVGGGMGGLTLARILHRHGidAVVYERDA 33
                59***************************993 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.3e-06    0.0029       2      31 ..       2      31 ..       1      47 [. 0.85
   2 ?   -3.6   0.0       2.3   5.1e+03     202     238 ..     121     158 ..     116     165 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.3e-06
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvel 31
                 +v+++GgG++Gl++a+ l ++g++ +++e+
   KIR65826.1  2 RVAIVGGGMGGLTLARILHRHGIDAVVYER 31
                 89**********************999973 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.3
                  ESCEEEEEEETTE.EEEEEETTSCEEEESEEEE-S-EE CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 202 lgtsvkeidgnge.klevvledgeeidadlvvvavGvr 238
                  ++ + +++++++    e++  dg++  +d +v a G r
   KIR65826.1 121 WQRQLVAATPRSVgGFELTFADGHRAGCDVLVGADGAR 158
                  55556666666666667778888888888888777766 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   1.1e-05     0.024       2      44 ..       3      42 ..       2      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S- CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGg 44
                   v ++G+G++GL+ A  ++++G + +v e   +    +a  qGg
     KIR65826.1  3 VAIVGGGMGGLTLARILHRHGIDAVVYERDAS---RSARPQGG 42
                   89*************************99988...66666555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   8.2e-05      0.18       1      30 [.       2      31 ..       2      36 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.2e-05
                EEEEECSSHHHHHHHHHHHHTTSEEEEEES CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvver 30
                +v++vGgG  gl lA +l+++g +  v er
  KIR65826.1  2 RVAIVGGGMGGLTLARILHRHGIDAVVYER 31
                79********************99888777 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   5.9e-05      0.13      20      52 ..       3      34 ..       1      45 [. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.9e-05
                EEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS CS
        Thi4 20 vvivGaGssGLtaayylakkpdlkvailersvs 52
                v+ivG+G  GLt a++l ++ ++  ++ er  s
  KIR65826.1  3 VAIVGGGMGGLTLARILHRH-GIDAVVYERDAS 34
                89******************.********9876 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00019      0.42       2      32 ..       3      33 ..       2      40 .. 0.90
   2 ?   -3.3   0.0       3.5   7.8e+03     127     146 ..     148     167 ..     143     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
                    EEEE--SHHHHHHHHHHHTTT--EEEE-S-H CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrlwvree 32
                    +a++G+G+ G +lA++l+++g + +++ r++
      KIR65826.1  3 VAIVGGGMGGLTLARILHRHGIDAVVYERDA 33
                    9********************9999999886 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.5
                     EEEEESS--HHHHHTT--EE CS
  NAD_Gly3P_dh_N 127 vavlsGpslAeEvakgkpta 146
                     + vl G+  A+ v++  +t 
      KIR65826.1 148 CDVLVGADGARSVVRPLLTD 167
                     78999*99999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2657.38
//
Query:       KIR65827.1  [L=240]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-13   49.6   0.1    5.6e-13   49.0   0.1    1.2  1  TetR_C_1  Tetracyclin repressor-like, C-terminal domain
    5.9e-06   26.0   0.0    1.3e-05   24.9   0.0    1.6  1  TetR_N    Bacterial regulatory proteins, tetR family
    0.00094   18.9   0.1      0.007   16.1   0.0    2.4  2  HTH_23    Homeodomain-like domain
  ------ inclusion threshold ------
       0.18   11.4   0.0       0.33   10.6   0.0    1.4  1  CENP-B_N  CENP-B N-terminal DNA-binding domain


Domain annotation for each model (and alignments):
>> TetR_C_1  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.1   1.2e-16   5.6e-13       7     142 ..      94     236 ..      90     237 .. 0.93

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 1.2e-16
                 -HHHHHHHHHHHHHHHHHTSTTHHHHHHT-SS--HHHHHHHHHHHHHHHHT.T-.-HHHHHHHHHHHHHHHHHHH........HHHHHHHSTT--STT- CS
    TetR_C_1   7 dWrerlrelarslrrallrhrdlarlfagtprlspnelrgmErlLrllrda.Gl.sdedavyalslisnFvvGav........leeqsgledaeeraeq 95 
                 +Wr+ + + a+++r+a l+h ++  l+ ++p l+p +l++ E   + l +a G  + +d  +al ++  F+vGa         ++++ g +  +++a+ 
  KIR65827.1  94 GWRDTVLAVAHRTRAAALEHEWFVDLLGARPHLGPHALAVGEANAAALSQApGVrGVDDLQRALGVLNAFLVGALrreiterrTARSTGTDVSAWQAAH 192
                 7*******************************************99998876773578999************************************** PP

                 HHHHHHH--TTT-HHHHHHHH...HHT---HHHHHHHHHHHHHHHHH CS
    TetR_C_1  96 eavleealepgeypllaealelaeiltsedsdaaFefGLellldGle 142
                  ++l ++l++g+yp  a+++      + +d++++F + L+ +ldG+ 
  KIR65827.1 193 GPYLTRMLATGRYPTVARLVV---DGAHLDAEETFHRNLAAILDGIT 236
                 ********************9...5556678**************95 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.9e-09   1.3e-05       1      45 [.      32      76 ..      32      78 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 2.9e-09
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLle 45
                I daA +     G d+++vr+IAk++Gv++  lY y  ++ eLl+
  KIR65827.1 32 IADAAIRIADADGLDGLSVRKIAKELGVGPMRLYDYVINRSELLD 76
                669********************************9888888875 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.6e-06     0.007      16      37 ..      42      67 ..      25      73 .. 0.74
   2 ?   -0.7   0.0      0.31   1.4e+03       6      25 ..     154     174 ..     151     175 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.6e-06
      HTH_23 16 e....GlsvreIAreLgvsrrTvyrw 37
                     Glsvr+IA+eLgv ++ +y +
  KIR65827.1 42 AdgldGLSVRKIAKELGVGPMRLYDY 67
                15566******************976 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.31
      HTH_23   6 eRlr.illllaeGlsvreIAr 25 
                 +R++ +l ++++G+ +reI +
  KIR65827.1 154 QRALgVLNAFLVGALRREITE 174
                 566668899999999999966 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.4e-05      0.33      22      50 ..      47      75 ..      43      78 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.4e-05
                TT-HHHHHHHHT--CCHHHHHHHCHHHHC CS
    CENP-B_N 22 geSkaelarrfnvpestlsdilknKkkll 50
                g S++ +a++++v++  l+d + n  +ll
  KIR65827.1 47 GLSVRKIAKELGVGPMRLYDYVINRSELL 75
                669*****************999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1785.88
//
Query:       KIR65828.1  [L=303]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-26   92.4   0.1    1.4e-25   89.9   0.1    1.9  1  adh_short     short chain dehydrogenase
    1.9e-18   66.9   0.1    2.4e-18   66.6   0.1    1.3  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    3.7e-06   27.0   1.6    7.2e-06   26.0   1.6    1.5  1  KR            KR domain
    0.00034   20.2   0.1    0.00046   19.7   0.1    1.2  1  Epimerase     NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.087   12.1   0.1       0.12   11.6   0.1    1.1  1  Pyr_redox_3   Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.1   3.9e-29   1.4e-25       2     191 ..      16     215 ..      15     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 3.9e-29
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 v++vtGa sG+G+ +a ela+ Ga+vv++ r  ++ +e+a  ++ e     + ++D+++ ++v+a+ +k v+++ ++d+LvnNAG    gp  ++s++ 
  KIR65828.1  16 VAVVTGANSGLGLVTATELARHGARVVLAVRDTAAGREAARRIGGE---TEVRELDLASLASVRAFAAKLVADHPRIDLLVNNAGAVLLGP-RRTSADG 110
                 89**************************999999999999999976...9************************************55555.4677778 PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGT............SB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT..EEEEEEEESSBSSH CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvagk............vpvagvaaYsAsKaavagltrslakelaptg..irvnavaPGlvdTd 185
                 +e  +++Nl g f lt ++l+ + +++++r+v  sS + +              + g aaY+ sK a + +  +l + l+  g  +  +  +PGl++T+
  KIR65828.1 111 FELHLATNLLGHFALTGLLLESLAAARQARVVSLSSLTHRtarldfadlmyeRNYRGSAAYGRSKLAATVFGVELDRRLRAAGspVVSVLAHPGLTRTN 209
                 ************************************98651112222222113577899***********************9886667789******9 PP

                 HHHHHC CS
   adh_short 186 makelr 191
                 ++ ++ 
  KIR65828.1 210 LTPRAW 215
                 987665 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.1   6.6e-22   2.4e-18       1     134 [.      21     152 ..      21     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 6.6e-22
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae..vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga sg+G  +A +la++Ga+vvl+ ++ +a    +e+a+++g e  v e+D ++ ++v+a+++++v+++ ++D lvnnag +    gp   ts ++f
    KIR65828.1  21 GANSGLGLVTATELARHGARVVLAVRDTAA---GREAARRIGGEteVRELDLASLASVRAFAAKLVADHPRIDLLVNNAGAVLL--GP-RRTSADGF 111
                   899**************************9...56666666633249************************************9..76.89****** PP

                   HHHHHHHTHHHHHHHHHHHH..HCTSCCEEEEEEEGGGTSB CS
  adh_short_C2  96 draldvnlyslfllakaalp..lmkeggsivnlssvgaerv 134
                   +  l++nl + f+l+  +l+  ++++++++v lss+  + +
    KIR65828.1 112 ELHLATNLLGHFALTGLLLEslAAARQARVVSLSSLTHRTA 152
                   ********************8555677********987655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   1.6     2e-09   7.2e-06       4      92 ..      18      99 ..      16     149 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2e-09
                EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE----- CS
          KR  4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvl 92
                ++tG+  gLGl++a+ la++gar +vl  R+ aa +      ++ ++ g e ev+++D+++ ++v+a  +++ a++p+i   ++ Ag++
  KIR65828.1 18 VVTGANSGLGLVTATELARHGAR-VVLAVRDTAAGR------EAARRIGGETEVRELDLASLASVRAFAAKLVADHPRIDLLVNNAGAV 99
                89*******************98.566667733333......34578899******************************999999976 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   1.3e-07   0.00046       2     150 ..      18     179 ..      17     191 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.3e-07
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC...EEEE--TT-HHHHHHH....HHHH.T-SEEEE-.-S.---HHHHHHSHHHHHH. CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl...elveldltdrsalerl....fkee.qpdavihl.Aa.vggvaassedpadfie. 89 
                 +VtGa+  +G  ++ +l+++g +v+   r++ a+++a+++     e+ eldl   ++++++    ++++ ++d  ++  +a   g++++s d  ++   
  KIR65828.1  18 VVTGANSGLGLVTATELARHGARVVLAVRDTAAGREAARRIGgetEVRELDLASLASVRAFaaklVADHpRIDLLVNNaGAvLLGPRRTSADGFELHLa 116
                 8**********************9999999888877765544999*********998876522226778899998887355778888888888776554 PP

                 HHTHHHHHHHHHHHHH....TCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHH CS
   Epimerase  90 knlqgtlnlleaarka....gvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlage 150
                 +nl g   l   + ++       r++ lsS  +  + a+    + + + +++ + +Y+++Kla+ 
  KIR65828.1 117 TNLLGHFALTGLLLESlaaaRQARVVSLSS--LTHRTARLDFADLMYERNYRGSAAYGRSKLAAT 179
                 999988887766664433215559****99..333334432555555677799999999999875 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   3.4e-05      0.12     163     202 ..      12      53 ..       4      67 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.4e-05
  Pyr_redox_3 163 agqkvvViGgknSavD..aAlelvrkgaeVtvvtrgseieke 202
                  +  +v+V+ g nS+    +A+el+r+ga+V +++r++   +e
   KIR65828.1  12 QRGRVAVVTGANSGLGlvTATELARHGARVVLAVRDTAAGRE 53 
                  5679*********976448****************9976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1967.04
//
Query:       KIR65829.1  [L=288]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-50  169.8   3.0    5.3e-50  169.8   3.0    1.8  2  MLTR_LBD  MmyB-like transcription regulator ligand binding do
    3.2e-17   62.6   7.9    3.2e-17   62.6   7.9    2.3  2  HTH_31    Helix-turn-helix domain
    1.3e-07   31.6   0.0    2.6e-07   30.6   0.0    1.5  1  HTH_3     Helix-turn-helix
  ------ inclusion threshold ------
       0.17   11.9   0.0       0.32   11.1   0.0    1.4  1  HTH_19    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> MLTR_LBD  MmyB-like transcription regulator ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.4      0.36   1.6e+03      72     124 ..      51     102 ..      29     105 .. 0.67
   2 !  169.8   3.0   1.2e-53   5.3e-50       1     168 []     109     275 ..     109     275 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.36
    MLTR_LBD  72 ralvarLraeaarrpddpalaalvaeLsaaspefarlwarhdvaarrsgrkrl 124
                  ++ +r+ +    rp d+ laa+ + L   +++ +r   +   aarr+ + r+
  KIR65829.1  51 TDYYQRMEQGREVRPSDDVLAAIAGALGL-DERERRHLFTLARAARRPVPARV 102
                 55667777777788999999999888877.44444444444444444555555 PP

  == domain 2  score: 169.8 bits;  conditional E-value: 1.2e-53
    MLTR_LBD   1 vrpalrrlLdalepvPAlVldrrwdvlaaNraaraLlgdpaalpeperNllrlvfldpglrpli.edweevaralvarLraeaarrpddpalaalvaeL 98 
                 v++++rrlL+ l ++PA+Vl+r++d+la+N++a+aLlgdp+ +p+++ N+l l+f+d    ++  +dwe+ a ++++ +r ++a++p +p+++a+v+eL
  KIR65829.1 109 VPEGTRRLLRVL-DTPAVVLGRHLDLLAWNPMAQALLGDPDGYPPERLNMLLLMFDDALTGQRScPDWERQALDYIGMMRVAVAADPTHPRATAVVGEL 206
                 7899********.*********************************************6655555********************************** PP

    MLTR_LBD  99 saaspefarlwarhdvaarrsgrkrlrhpevgeltldsetlgtpddptlelvvytaePgdesteaalrlL 168
                 s +s+ef+rlwarhdv++  sg+k++r pevg++ ld++t  +p++p+  l v+taePg++++++ lrlL
  KIR65829.1 207 SIRSAEFRRLWARHDVRESVSGTKTFRVPEVGDIVLDWDTYPLPGNPGPVLLVFTAEPGSADADR-LRLL 275
                 *****************************************************************.**98 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   7.9   7.1e-21   3.2e-17       1      64 []       8      87 ..       8      87 .. 0.99
   2 ?   -0.9   0.1      0.48   2.1e+03      45      58 ..     111     124 ..      92     131 .. 0.76

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 7.1e-21
      HTH_31  1 aLGalLralRera................GLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerael 64
                +LG++Lra+R r                 GL++eevA ++g+s +++ r+EqGr+ rps +vl+a+a algld+ er++l
  KIR65829.1  8 ELGDFLRARRGRLrprdvglepggrrkvtGLRREEVALLAGLSTDYYQRMEQGREVRPSDDVLAAIAGALGLDERERRHL 87
                69****************************************************************************98 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.48
      HTH_31  45 avlealaralgldp 58 
                 +  ++l+r+l+++ 
  KIR65829.1 111 EGTRRLLRVLDTPA 124
                 55689999999874 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   5.8e-11   2.6e-07       9      53 ..      37      82 ..      32      83 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 5.8e-11
                THHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  9 glsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvsld 53
                gl +ee+A ++G+s  +++r+E G e +Ps ++l ++a aLg++ +
  KIR65829.1 37 GLRREEVALLAGLSTDYYQRMEQGrEVRPSDDVLAAIAGALGLDER 82
                899***************************************9876 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.1e-05      0.32      11      57 ..      36      82 ..      33      91 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.1e-05
      HTH_19 11 lgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidle 57
                 gl  ee+a  +g s  ++   E g+   ps ++l +ia alg+d+ 
  KIR65829.1 36 TGLRREEVALLAGLSTDYYQRMEQGREVRPSDDVLAAIAGALGLDER 82
                57889********************999****************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2094.55
//
Query:       KIR65830.1  [L=371]
Description: GDSL family lipase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-30  105.6   6.4    3.1e-30  105.0   6.4    1.2  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    5.7e-25   87.9  14.9    7.7e-13   49.0   0.5    3.7  3  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
      4e-17   63.2   1.4    8.4e-17   62.1   1.4    1.5  1  Lipase_GDSL_2    GDSL-like Lipase/Acylhydrolase family
    4.6e-11   43.1   0.1      9e-11   42.1   0.1    1.5  1  Lipase_GDSL      GDSL-like Lipase/Acylhydrolase
     0.0023   18.1   0.0     0.0033   17.6   0.0    1.2  1  Lipase_GDSL_3    GDSL-like Lipase/Acylhydrolase family
  ------ inclusion threshold ------
       0.16   11.2   0.1       0.24   10.6   0.1    1.2  1  OSK              OSK domain


Domain annotation for each model (and alignments):
>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   6.4     1e-33   3.1e-30       4     127 .]     247     368 ..     244     368 .. 0.96

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 1e-33
                     EEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEETTSEEEETT.TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTTEEEET CS
  Ricin_B_lectin   4 eirnvasgkCLdvegeska.gapvglydChgskgkQlwtltkdgeirskaqselCldvs..staegakvvlakChkgkgnqrWefdkdgtqirhk 95 
                     +++++ sg C+dv+g+ ++ g++v+l+dChg+++ Q+wt+t+ + + +   +++Cld+   +t++g+ v++++Ch g++nq+W+++++gt i   
      KIR65830.1 247 ALVGTLSGRCVDVPGSTTTnGTQVQLWDCHGGAN-QQWTYTSGKALTVY--GNKCLDAAgyGTSPGTLVTIYDCH-GGANQQWNVNSNGT-ITGV 336
                     688889************9*************88.*******9999995..9***********************.999***********.**** PP

                     TTSEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  96 ksgkCLdvkgasksne.klilkkcdsgsdsQkW 127
                     +sg+CLd ++ +++n+ kl+l++c +g+++Q+W
      KIR65830.1 337 QSGLCLDPYNLGTANGtKLVLWTC-TGQTNQQW 368
                     **********************99.******** PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   1.0   2.9e-12   8.8e-09      14      55 ..     245     286 ..     221     294 .. 0.82
   2 !   49.0   0.5   2.6e-16   7.7e-13      22      89 .]     295     358 ..     289     358 .. 0.96
   3 !   26.5   1.0   2.6e-09   7.7e-06      16      53 ..     332     369 ..     332     371 .] 0.96

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 2.9e-12
                      EEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEE CS
  RicinB_lectin_2  14 yytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrle 55 
                         ++   sg+++dv+g+ t+ng++vq w+c+g+anqqW+ +
       KIR65830.1 245 GTALVGTLSGRCVDVPGSTTTNGTQVQLWDCHGGANQQWTYT 286
                      37788899*******************************974 PP

  == domain 2  score: 49.0 bits;  conditional E-value: 2.6e-16
                      SSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  22 sgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                       +k+Ld+ag +t++g+ v  ++c+g+anqqW ++++g    +i+ ++sg++Ld ++ +tanGt++ +w
       KIR65830.1 295 GNKCLDAAGYGTSPGTLVTIYDCHGGANQQWNVNSNG----TITGVQSGLCLDPYNLGTANGTKLVLW 358
                      58*******************************8888....**************99*********99 PP

  == domain 3  score: 26.5 bits;  conditional E-value: 2.6e-09
                      EEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEE CS
  RicinB_lectin_2  16 tiknvasgkvLdvaggstanganvqqwtcsgaanqqWr 53 
                      ti+ v+sg++Ld  + +tang++++ wtc+g++nqqW 
       KIR65830.1 332 TITGVQSGLCLDPYNLGTANGTKLVLWTCTGQTNQQWS 369
                      6999*********************************6 PP

>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   1.4   2.8e-20   8.4e-17       2     178 ..      42     218 ..      42     219 .. 0.73

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 2.8e-20
                    EESHHHHTCTTBCCHCHHCCCCCCCHHHTT-EEEEE..............EEHCCH-H..HHHHHHHH.CTGGG-TSEEEEE--CCCCCTT--HHH CS
  Lipase_GDSL_2   2 lGDSiTaGygadgggrsypaylarllaarlgldvvnn.............lgvsGattallrllerlr.dllrlkpdlvtiliGtNDlgrgvpaaa 83 
                    lGDSiT+G  ++ gg++   + +rl a r+ +d+v                g +G+++  ++++  +   l +++p+ v+++iGtND++++ ++++
     KIR65830.1  42 LGDSITEGTQVP-GGYRIGLW-QRLAAGRYTVDFVGSqfngpaslgdhdhQGHPGWRI--DQIDANIVgWLNTQRPKSVLLHIGTNDILQNYNVST 133
                    8********995.55566666.777777775555553444555555556677888877..333333334667888899****************** PP

                    HHHH..HHHHHHHHCCC...GEEECEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHH.CT-EEE-HHHHHHHCCCCCGGBBTTS.SSB-HHHHH CS
  Lipase_GDSL_2  84 aaandnleelidalraaapgarilvlgplpptpeaaadarelnaviaaynealrevaae.egvpfvDlhdaladsgerladlladdglHPnaaGyr 178
                    a ++  l +lid++ +  p a ++v++++    +++a a++    +aa+  ++++  ++ + v++vD+ +al   +      l d+ +HP+a Gy+
     KIR65830.1 134 APNR--LSSLIDKITNTVPTAEVFVAQIITLSNSNQAAAAR--TFNAAIPGIVQSKVNAgKRVRLVDMQSALTTAD------LIDG-VHPTAGGYD 218
                    **99..******************88888888887777766..5555555555554444699******66665554......5666.********7 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1     3e-14     9e-11       1     198 [.      39     222 ..      39     224 .. 0.69

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 3e-14
                  EEEEESHHHHTT................THHHHHHHCCCCEECCCTTC.GCEEEEEEECTTHHHHHHHCCHECTTTECHHHHHCTTSEEEEE--CTCC CS
                  xxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL   1 ivafGDSltdGd................gaatlntiqlktpknlnefdlaldrianignkgasdnelqqllnkyplkseqlkalhpdlviislGtNDs 82 
                  ++ +GDS+t+G                 g +t++  + +++   +  d    + +  + ++ ++   + +    ++        +p+ v++ +GtND+
   KIR65830.1  39 VMPLGDSITEGTqvpggyriglwqrlaaGRYTVDFVGSQFNGPASLGD---HDHQGHPGWRIDQIDANIVG-WLNT-------QRPKSVLLHIGTNDI 125
                  5779******99666333444444444444444444444333332222...22222222222222222222.1222.......34779********** PP

                  -EECSSCTTTCEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCHCTCCCCHCCHHHHHHHHHHHHHHHHHHHH.....HCTEEEECHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx RF
  Lipase_GDSL  83 nlgkkstdaakkeaeeyiknlreaikelkeegapkaivvlvsppglgpqeekdakklgekgnefvgeynqrlndlae.....kdgfavvDlydelqgl 175
                           ++++++ + ++l ++i+ + +   p a v++  ++ l++           + + +++ +n  +  +++     ++ + +vD+ + l+  
   KIR65830.1 126 --------LQNYNVSTAPNRLSSLIDKITNTV-PTAEVFVAQIITLSN----------SNQAAAARTFNAAIPGIVQskvnaGKRVRLVDMQSALTTA 204
                  ........*********************888.***************..........66667777888888888888888899*******9999998 PP

                  HCCGCHCHTSSSB-HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL 176 sgieqlkaDglHpsekgyeklae 198
                     + +  Dg+Hp+  gy k+a 
   KIR65830.1 205 ---DLI--DGVHPTAGGYDKMAA 222
                  ...222..*************96 PP

>> Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.1e-06    0.0033      66     174 ..     124     225 ..      99     229 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
  Lipase_GDSL_3  66 dllpNasaeeirerleyfvktlrkahPktpillvedlsttkglvdeklekeveaknkaleelvkklkkekekklylisskellgkdeeatvdgiHp 161
                    d+l N +++   +rl  +++++ +  P + +++ + ++    l + + +++ +++n+a+  +v++  +   k + l++ ++    +  + +dg+Hp
     KIR65830.1 124 DILQNYNVSTAPNRLSSLIDKITNTVPTAEVFVAQIIT----LSNSNQAAAARTFNAAIPGIVQSKVN-AGKRVRLVDMQS--ALTTADLIDGVHP 212
                    56666999*************************99333....33445578889999999999988644.456788888888..6677889****** PP

  Lipase_GDSL_3 162 sdlGllryadale 174
                    +  G+ ++a    
     KIR65830.1 213 TAGGYDKMAARWY 225
                    ******9998765 PP

>> OSK  OSK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   8.2e-05      0.24      72     156 ..     114     202 ..     102     207 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.2e-05
                 -EEEEE--HHHHHTT--HHHHHHHHHHHHHHHHHT..T-EEEEE-----GGGTT-HHHHHHHHHHHHHH......HHHT.TTS-EE--SGGGB CS
         OSK  72 srvvvnlGsvDilngktlvelehDlteLlkelrer..nvaiilttlaPlaNlsaekklsdkllkfNnfi......rkeakenykviDlyecfv 156
                 + v++++G+ Dil++ ++    + l +L+ ++ +    +++ ++ +  l+N+     ++ +   fN  i      + +a +  +++D+ + ++
  KIR65830.1 114 KSVLLHIGTNDILQNYNVSTAPNRLSSLIDKITNTvpTAEVFVAQIITLSNSN----QAAAARTFNAAIpgivqsKVNAGKRVRLVDMQSALT 202
                 679*******************************9999999999999999975....455667788888777776445556668888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2701.52
//
Query:       KIR65831.1  [L=432]
Description: hypothetical protein TK50_11020 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-10   41.5   4.6    3.9e-10   40.4   4.6    1.6  1  BTAD          Bacterial transcriptional activator domain
    0.00084   19.4   1.4     0.0028   17.7   0.0    2.6  3  Trans_reg_C   Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
      0.026   14.5   0.2         11    6.1   0.0    2.9  2  HTH_15        Helix-turn-helix domain of alkylmercury lyase
      0.032   13.5   0.1       0.15   11.3   0.0    2.0  2  PNP_UDP_1     Phosphorylase superfamily
        1.5    9.9  11.3        7.5    7.7   3.0    4.4  5  TPR_14        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   4.6   1.1e-13   3.9e-10       1     104 [.     104     202 ..     104     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1.1e-13
                 BHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHH CS
        BTAD   1 vDlarfealvaagraalaagdpeeaaelleaAlalwrGpaladleagewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlh 99 
                 vD+ rf++lv+ + +a    dp++a++ l +Alalw G++l d+e++++++  +e+l+e r +a +al+ a   +G +++a +  ++l+ae P ++++ 
  KIR65831.1 104 VDVFRFRRLVHGSHHA----DPATAIDTLTDALALWSGRPLFDAESFPFARRTIEQLREAREAAERALLHAYRDVGMWDRAFEFGQGLLAERP-DDAAL 197
                 8********6665443....99***********************************************************************.55667 PP

                 HHHHH CS
        BTAD 100 rqlmr 104
                 ++lm 
  KIR65831.1 198 AELMD 202
                 77775 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   7.8e-07    0.0028       5      72 ..      17      90 ..      13      96 .. 0.86
   2 ?   -2.7   0.0       1.9   6.7e+03      41      56 ..     192     207 ..     188     218 .. 0.72
   3 ?   -2.1   0.2       1.2   4.3e+03      52      63 ..     284     295 ..     283     306 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 7.8e-07
                 E-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTS....TSHTHHHHHHHHHHHHHHHTT..TTSSSSEEEETT CS
  Trans_reg_C  5 eltpkefklLelLlenpgrvvsreeLleevwgede....dvddrtvdvhisrLRkkLedd..ekkprlIetvrg 72
                  l p+   +L  Ll  +g++++ +eL++ vw  ++     +    v+  i  LRk L++   ++ ++ ++t rg
   KIR65831.1 17 PLPPTTATVLIRLLLAAGEPLTVDELFRDVWAPRSgpvdRPGKIFVQKRILELRKLLDPLrpGERSEILRTERG 90
                 6889999***************************97666666668************99876556678888887 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.9
                  SHTHHHHHHHHHHHHH CS
  Trans_reg_C  41 vddrtvdvhisrLRkk 56 
                  +dd ++   + r+R+ 
   KIR65831.1 192 PDDAALAELMDRIRRE 207
                  5777888888888875 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.2
                  HHHHHHHTTTTS CS
  Trans_reg_C  52 rLRkkLeddekk 63 
                   LR+ L+d++k 
   KIR65831.1 284 ELRRALADAPKV 295
                  79*****97754 PP

>> HTH_15  Helix-turn-helix domain of alkylmercury lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0061        22      24      41 ..      27      42 ..      15      48 .. 0.77
   2 ?    6.1   0.0     0.003        11       9      42 ..     268     301 ..     262     307 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0061
      HTH_15 24 rpLlrlLakGepVtveeL 41
                +    lLa Gep tv+eL
  KIR65831.1 27 IR--LLLAAGEPLTVDEL 42
                33..3689********98 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.003
      HTH_15   9 slakgeeggssaellrpLlrlLakGepVtveeLA 42 
                 +l + e gg+ a+l r L r La+   V  e+ A
  KIR65831.1 268 QLLRREYGGDRAWLDRELRRALADAPKVDTETRA 301
                 677999******************9888777665 PP

>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.28     1e+03     118     148 ..     191     220 ..     169     225 .. 0.79
   2 ?   11.3   0.0   4.2e-05      0.15      88     173 ..     255     339 ..     250     353 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.28
                 TTSSEE--HHHHHHHHHCHHTTTTTEEEEEE CS
   PNP_UDP_1 118 dsydapadpelrallkeaaealgikvhrGvv 148
                  + da a +el ++++++a+al+++v++ v+
  KIR65831.1 191 RPDDA-ALAELMDRIRREAQALPRNVVQRVF 220
                 45566.77899999999***99999998665 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.2e-05
                 TT-EEEEEEEEESSSCCGCCTHHCC....TCCCCTTSSEE--HHHHHHHHH.........CHHTTT..TTEEEEEEEEESESS-CH..HHHHHHHHHTC CS
   PNP_UDP_1  88 vGDvvipddainfdgrsplygpkee....gqyfpdsydapadpelrallke.........aaealg..ikvhrGvvatadgfyaet..eaelrllrrlg 169
                  GD+vi +d+++ +++++ yg ++     +              lr++l           aa+++g  i++ +G+va+  ++++    +    +++r+g
  KIR65831.1 255 TGDIVINSDSVQGQLLRREYGGDRAwldrE--------------LRRALADapkvdtetrAAKRRGklIRYPVGTVAVLRQPRRRIfgV----AYSRMG 335
                 69**********999999777666633333..............333333333333333356666888*********999998765332....444455 PP

                 -CEE CS
   PNP_UDP_1 170 adav 173
                  d+v
  KIR65831.1 336 NDLV 339
                 5554 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.3   1.2e+04       7      17 ..      26      36 ..      23      46 .. 0.73
   2 ?    2.0   0.0      0.14   5.1e+02      15      31 ..     119     135 ..     111     142 .. 0.86
   3 ?    1.5   0.1      0.21   7.4e+02      15      28 ..     154     167 ..     151     169 .. 0.87
   4 ?    7.7   3.0    0.0021       7.5       3      40 ..     163     200 ..     159     203 .. 0.90
   5 ?    2.2   0.2      0.12   4.4e+02      22      35 ..     283     296 ..     268     308 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.3
      TPR_14  7 laeallalGdp 17
                l ++lla+G+p
  KIR65831.1 26 LIRLLLAAGEP 36
                67888999987 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.14
      TPR_14  15 GdpdeAiallrralala 31 
                  dp++Ai+ l +alal+
  KIR65831.1 119 ADPATAIDTLTDALALW 135
                 689***********986 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.21
      TPR_14  15 GdpdeAiallrral 28 
                 ++++eA+++++ral
  KIR65831.1 154 EQLREAREAAERAL 167
                 58999*******98 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0021
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawll 40 
                 a +al++a++  G +d+A +  + +la  Pdda++  l
  KIR65831.1 163 AERALLHAYRDVGMWDRAFEFGQGLLAERPDDAALAEL 200
                 6789***************************9988655 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.12
      TPR_14  22 allrralalaPdda 35 
                 + lrrala+aP+ +
  KIR65831.1 283 RELRRALADAPKVD 296
                 56999999999743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2897.20
//
Query:       KIR65832.1  [L=132]
Description: hypothetical protein TK50_11025 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.56
# Mc/sec: 711.12
//
Query:       KIR65833.1  [L=524]
Description: hypothetical protein TK50_11030 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.012   15.6   1.2       0.15   12.1   0.1    2.4  2  Lentiviral_Tat  Lentiviral Tat protein


Domain annotation for each model (and alignments):
>> Lentiviral_Tat  Lentiviral Tat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.016   2.9e+02      22      55 ..     219     252 ..     200     264 .. 0.79
   2 ?   12.1   0.1   8.3e-06      0.15      26      54 ..     485     513 ..     479     518 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.016
  Lentiviral_Tat  22 rerdtwdyvsirvPgeilqrwlamlrngrlrrkv 55 
                     ++   w + s r+   +l r+l      r   +v
      KIR65833.1 219 EQLSEWVWSSGRAEPATLTRYLLYAAMARYELRV 252
                     5667899******999****99776666666555 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 8.3e-06
  Lentiviral_Tat  26 twdyvsirvPgeilqrwlamlrngrlrrk 54 
                      w ++++ vPg  l  wla+ +    rr+
      KIR65833.1 485 GWAWAAVLVPGAFLTTWLALTTRRAYRRR 513
                     6*******************999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3679.89
//
Query:       KIR65834.1  [L=557]
Description: molecular chaperone Hsp70 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-90  304.1   0.3    1.1e-67  228.7   0.0    3.0  3  HSP70     Hsp70 protein
    4.1e-14   52.1   0.0    1.5e-13   50.3   0.0    1.9  1  MreB_Mbl  MreB/Mbl protein


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   4.3e-16   3.9e-12       2      74 ..       8      83 ..       7      87 .. 0.88
   2 !  228.7   0.0   1.2e-71   1.1e-67     102     370 ..      85     354 ..      82     362 .. 0.93
   3 !   27.6   0.0     9e-11   8.1e-07     422     513 ..     454     549 ..     432     556 .. 0.80

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 4.3e-16
                EEEEEXSSEEEEEEE.ETTEEEEEXXTTSX.SSEESEEEEXTT.SEEETHHHHHCTTTTGGGEEEXGGGTTTXBTT CS
       HSP70  2 iGiDLGttnsvvavm.eggkievianeegn.rttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvKrliGrkfs 74
                +GiDLGtt+s+++ + e g+++vi +  ++  t Psvv F++  + +vG++A++ a ++p+ +v  vKr +Gr+ +
  KIR65834.1  8 FGIDLGTTYSAISYIdETGRPTVIRDLIAEsDTMPSVVYFESAdNVVVGANARNMARVDPEHVVERVKRQMGRERQ 83
                7***********96626789*****987651688*******99899***************************765 PP

  == domain 2  score: 228.7 bits;  conditional E-value: 1.2e-71
                 EETTEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSSXEEE CS
       HSP70 102 eaagekftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGggtfdv 200
                 e+ ge+ tpe isa +L++l e a++y++++v +avitvPaYf   +R at++Ag +AGL+vl iv ep Aaal Y l +   er+vlvyDlGggtfd 
  KIR65834.1  85 EFFGETHTPESISALILRRLTEYAQEYTQREVRQAVITVPAYFGMLERDATRNAGVLAGLDVLGIVPEPVAAALQYDLMDGAAERTVLVYDLGGGTFDT 183
                 6789*********************************************************************************************** PP

                 EEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSX..XGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEEHHH CS
       HSP70 201 SilelekGvfevkaTagDthlGGedfDealvehlveefkkkegi..dlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlseklsRak 297
                  +++++   +ev  T gD++lGG d+D++l++hl++ef        + ++d + +q l  +ae++K++LS++++ +++l +  + +      ++++R+ 
  KIR65834.1 184 TVIRVGADAVEVICTDGDQELGGADWDDRLAQHLLQEFVAAAAPaeEPAEDAQFMQDLYLTAEQVKRQLSQATSRTVPLRFAGASA-----MITITRQT 277
                 **************************************987654338899*********************999999999999888.....89****** PP

                 HHHHHHHHHHHTHHHHHHHHHHCTEE.....GGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHH CS
       HSP70 298 feelvedllertlepvekalkdaklk.....keeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAv 370
                 fee+++dll++t+  + + l   + k      + +dev+lvGGst++P+v+ ++ e +g  p+   +pD ava+GAA 
  KIR65834.1 278 FEEITRDLLDNTIAITDRTLDKLRDKlggdpRQLVDEVLLVGGSTKMPAVTARLAETYGWRPQL-HDPDLAVAKGAAR 354
                 **************99999876443321233677*************************88865.49*********95 PP

  == domain 3  score: 27.6 bits;  conditional E-value: 9e-11
                 EESSTTSSSEEEEEEES....SSSBGGGSEEE..EEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTCCEEEEEEECCSSSBHHHHHHHHHH CS
       HSP70 422 staadnqtaveievlqg....erelvkdnkll..gsfeldgippaprGvpqieVtfdidanGiltvsakdketgkeeeitieaseglseeeiekmvkd 513
                  t+ dnq++++iev++     e + +  nk++  g  +++g+pp+p+G+p i++++ +d nG+ltv+a + ++gk+ +i ++  + lseeei ++  +
  KIR65834.1 454 GTVVDNQQELKIEVYEQagtvESAELFANKAVdrGAGTITGLPPLPQGSP-INISMTVDDNGLLTVHAVEPTSGKDLTIAVRV-SVLSEEEIPQLRAK 549
                 5899**********985122233333345554338899**********98.9***********************99999976.57999999888766 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   1.7e-17   1.5e-13       4     319 ..       8     356 ..       5     363 .. 0.75

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 1.7e-17
                 EEEEE-SSEEEE.EETTTE..EEEEE........ES-EEEETTT--EEEESHHHHTTTTS-GTTEE..EE-SEET.......TEESSHH.HHHHHHHHH CS
    MreB_Mbl   4 lgiDLGtantlv.yvkgkg..ivlne........psvvAikkktkkvlavGeeAkkmlgktpgnik..avrPlkd.......Gviadle.vaeellkyf 81 
                 +giDLGt+   + y+ ++g   v+++        psvv +++ ++  + vG +A++m    p++++  + r +         G     e + + +l+++
  KIR65834.1   8 FGIDLGTTYSAIsYIDETGrpTVIRDliaesdtmPSVVYFESADN--VVVGANARNMARVDPEHVVerVKRQMGRerqweffGETHTPEsISALILRRL 104
                 799999998877688877644454322222344488888777666..459*******999999985225666643122222222222221333456666 PP

                 HHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT-.-TTSSS-EEEEEE-SS-EEEEEEETTE.....EEEEEEES CS
    MreB_Mbl  82 ikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGagl.pveepsgnmvvdiGggttevavislgg.....ivtsksvr 174
                  + +++ ++ +  + vi+vP     +er A ++a   aG +   ++ ep+aAA+  +l + ++ +  +v d+Gggt + +vi +g      i t     
  KIR65834.1 105 TEYAQEYTQREVRQAVITVPAYFGMLERDATRNAGVLAGLDVLGIVPEPVAAALQYDLmDGAAERTVLVYDLGGGTFDTTVIRVGAdavevICTDGDQE 203
                 666777777788899*****************************************97255666778899************98853333356667889 PP

                 -SHHHHHHHHHHHHHHHHSEE-..-HHHHHHHHHHH-BSS--HHHH..EEEEEEEET...TTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-H CS
    MreB_Mbl 175 vaGdeldeaiikyirkkynlli..Gertaekikieigsavkeeeee..kmeikGrdl...vtglpkevevsseevrealkepvsaiveavkevLektpp 266
                 ++G ++d+ + +++ +++  +    e+ ae+ +       + e+ +    + + r +     g    ++++ ++ +e  ++ + + +    ++L+k   
  KIR65834.1 204 LGGADWDDRLAQHLLQEFVAAAapAEEPAEDAQFMQDLYLTAEQVKrqLSQATSRTVplrFAGASAMITITRQTFEEITRDLLDNTIAITDRTLDKLRD 302
                 ******************87662257779988875554444444443245566666533468999********************************** PP

                 HHHHHHHH..H-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTT CS
    MreB_Mbl 267 eLaadivd..rgivltGGgallkgldkllseetglpvkvaedpltcvakGtgkvl 319
                  L +d  +    ++l+GG++++  +   l e+ g + ++ +dp  +vakG+++++
  KIR65834.1 303 KLGGDPRQlvDEVLLVGGSTKMPAVTARLAETYGWRPQL-HDPDLAVAKGAARYA 356
                 ****954322579999******************99987.67999*****99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 3652.50
//
Query:       KIR65835.1  [L=898]
Description: hypothetical protein TK50_11045 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
          2    9.0   7.3        6.4    7.4   7.3    1.9  1  HSCB_C    HSCB C-terminal oligomerisation domain


Domain annotation for each model (and alignments):
>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   7.3   0.00035       6.4      20      64 ..     341     383 ..     327     403 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00035
                 GGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH CS
      HSCB_C  20 eeaadkeeleelkaeveerieeleaeleeafekkdleaaadllrr 64 
                 e+a d e+l++  a+ e+r++el++++++a+ ++d e+aa++l r
  KIR65835.1 341 EHA-DRETLRREIAAAEQRVAELLDQVDQAL-AADREEAAEQLLR 383
                 455.889999999999**************9.7788888887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (898 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.25s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 5966.52
//
Query:       KIR65836.1  [L=539]
Description: hypothetical protein TK50_11060 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.42   10.5   9.4       0.89    9.5   0.3    2.4  2  DUF3487          Protein of unknown function (DUF3487)
        2.6    8.1  22.6       0.57   10.2   5.6    2.4  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> DUF3487  Protein of unknown function (DUF3487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   9.9e-05      0.89      18      77 ..      15      74 ..      10      95 .. 0.84
   2 ?    3.8   3.9    0.0058        52      30      66 ..     158     194 ..     149     206 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 9.9e-05
     DUF3487 18 rGltadEllvlaglglvvglvlglllallvgslaliptialllvllvvlvggkllarlKR 77
                 G t++ llvla +g+ +++ l ll+++l++  a+ + + +++ + + ++   +l   +R
  KIR65836.1 15 DGETVKWLLVLAAVGVYLFFCLPLLFLALFQFTAVAVPVLMAGGAGWAIIRTIMLLAGRR 74
                6899999************************99988888877777666666666665555 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0058
     DUF3487  30 glglvvglvlglllallvgslaliptialllvllvvl 66 
                  +g+ vg+ lg++la++++ la ++ + l +v +++l
  KIR65836.1 158 AIGIGVGMTLGVVLAVAANLLATMVMLLLGVVTAGLL 194
                 6788889999999988888555444444444444444 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   5.6   6.3e-05      0.57      34      98 ..      19      77 ..      16      91 .. 0.77
   2 ?    3.2   9.0    0.0096        86      33      87 ..     146     194 ..     139     210 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.3e-05
  Phage_holin_3_6 34 gsgagllgaagvlallalllllvalalalaalwlaalivaavllvlagvlalvglkklkkakplp 98
                     ++ +++l+a gv +++ l+ll++al+ +       a+ v ++++  ag +++++++ l++++p+p
       KIR65836.1 19 VKWLLVLAAVGVYLFFCLPLLFLALFQFT------AVAVPVLMAGGAGWAIIRTIMLLAGRRPVP 77
                     5678899999***************8655......555777777777777777777777766644 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0096
  Phage_holin_3_6  33 agsgagllgaagvlallalllllvalalalaalwlaalivaavllvlagvlalvg 87 
                      ++ +  l+++ g++++   ++l v la+      +a l+ + v+l+l++v a + 
       KIR65836.1 146 LLMLWPLFAIFGAIGIGVGMTLGVVLAV------AANLLATMVMLLLGVVTAGLL 194
                      4444445555555554444444444443......334444444444444443222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       992  (0.0553294); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.37
# Mc/sec: 4343.09
//
Query:       KIR65837.1  [L=91]
Description: hypothetical protein TK50_11070 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0013   18.4   7.0     0.0013   18.4   7.0    2.6  3  DUF1232         Protein of unknown function (DUF1232)
  ------ inclusion threshold ------
      0.081   13.0   3.2      0.096   12.7   3.2    1.0  1  G3P_acyltransf  Glycerol-3-phosphate acyltransferase


Domain annotation for each model (and alignments):
>> DUF1232  Protein of unknown function (DUF1232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.5      0.37   3.3e+03       4       9 ..       5      10 ..       2      21 .. 0.66
   2 !   18.4   7.0   1.5e-07    0.0013       2      35 ..      43      72 ..      43      74 .. 0.90
   3 ?    2.1   0.5     0.019   1.7e+02       2      12 ..      69      79 ..      68      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.37
     DUF1232  4 liagal 9 
                l+a+a+
  KIR65837.1  5 LVALAI 10
                445544 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.5e-07
     DUF1232  2 klliagalaYlisPiDlIPDfiPvlGflDDlavl 35
                k++++ +++Y +sP+Dl+PD i    +lDD+++l
  KIR65837.1 43 KIAFWTGVVYALSPLDLLPDPI----YLDDIGLL 72
                6788999*************88....9***9987 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.019
     DUF1232  2 klliagalaYl 12
                ++l++g+l+Y+
  KIR65837.1 69 IGLLVGVLVYV 79
                799*******6 PP

>> G3P_acyltransf  Glycerol-3-phosphate acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.2   1.1e-05     0.096      97     159 ..       3      84 ..       1      87 [. 0.62

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.1e-05
                     HHHHH...HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH....HH..................HH....HHHHHHHHHHHTHHH CS
  G3P_acyltransf  97 llaldllllllallvfllvllltryvslaslvaalllpl...lllll................ll..llllllallvilrhren 159
                     ll ++l+++l++llv+++v l++++v ++sl+   l+p+   + +++                ++   + ll+++lv++rh +n
      KIR65837.1   3 LLLVALAITLITLLVVSIV-LFVKLVRVGSLIRSDLMPVkgkI-AFWtgvvyalspldllpdpIYldDIGLLVGVLVYVRHLAN 84 
                     3334445666776555555.6689*******988777765432.2223555555666655555115556788999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       931  (0.051927); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 672.64
//
Query:       KIR65838.1  [L=149]
Description: Fur family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-21   74.8   0.0    6.8e-21   74.6   0.0    1.1  1  FUR              Ferric uptake regulator family
    0.00046   20.0   0.0     0.0012   18.7   0.0    1.7  1  TrmB             Sugar-specific transcriptional regulator Trm
     0.0006   19.7   1.7     0.0014   18.5   1.7    1.7  1  MarR_2           MarR family
  ------ inclusion threshold ------
      0.016   15.2   0.7      0.055   13.5   0.3    2.1  2  HTH_20           Helix-turn-helix domain
      0.025   14.5   0.1      0.069   13.1   0.1    1.7  2  TOBE_3           TOBE-like domain
      0.052   13.5   1.3      0.052   13.5   1.3    2.6  2  Nudix_N_2        Nudix N-terminal
      0.057   13.8   0.0      0.064   13.6   0.0    1.1  1  Penicillinase_R  Penicillinase repressor
       0.13   12.2   0.0       0.35   10.8   0.0    1.8  1  HTH_5            Bacterial regulatory protein, arsR family
        3.2    7.7   7.4       0.39   10.7   0.4    2.3  2  Zn_ribbon_SprT   SprT-like zinc ribbon domain


Domain annotation for each model (and alignments):
>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.0   3.4e-24   6.8e-21       3     116 ..      13     125 ..      11     129 .. 0.91

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 3.4e-24
                 THCHHHHHHHHHHHHHHHSSSBEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESSSSSEEEEEETTT--EEEE--HHHHHHH CS
         FUR   3 glklTkqRekilevlekseehlsaeevykelkeedpeislaTVYrtLklleeaglvkelefedgesryelakkehhdhlicekCgkviefkddeiekiq 101
                 +l++T++R+++l+ l++++ h++ + v   ++ ++p++s   VY +L+ l++aglv++++ +++++rye + +++h+h++c++Cg + +++    ++  
  KIR65838.1  13 SLRVTRPRLAVLAALRDHP-HVDTDTVIALVRADQPTVSHQAVYDVLRALTDAGLVRRIQPAGATARYECRVGDNHHHVVCRSCGAIADVDCAVGHAPC 110
                 69*************9876.*********************************************************************9988777777 PP

                 HHHHHHTT-EEEEEE CS
         FUR 102 eeiaekegfklvshr 116
                  ++++++gf + + +
  KIR65838.1 111 LTASDDHGFDVDEAE 125
                 777777777777666 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.2e-07    0.0012      34      63 ..      49      80 ..      44      82 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6.2e-07
                SSCHCHHHHHHHHHHCTSEEEESST..TTEEE CS
        TrmB 34 vprskvYevLrsLedkGlVerekgr..pklYr 63
                v+++ vY+vLr L d+GlV+r++    + +Y+
  KIR65838.1 49 VSHQAVYDVLRALTDAGLVRRIQPAgaTARYE 80
                88999****************98433466666 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   1.7   7.1e-07    0.0014       3      55 ..      16      72 ..      14      78 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 7.1e-07
                --HHHHHHHHHHHCTTTSEE.EHHHHHH..HHTSSHHHHHHHHHHHHHTTSEEEE.E CS
      MarR_2  3 ltpaqarvLaaLgrrpgrdl.tvgelar..rlglsksavsrilkrLvaaGLverr.p 55
                +t+  + vLaaL+++p  d  tv +l+r     +s++av  +l+ L +aGLv+r  p
  KIR65838.1 16 VTRPRLAVLAALRDHPHVDTdTVIALVRadQPTVSHQAVYDVLRALTDAGLVRRIqP 72
                688999**********98446*****9966777********************9843 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   2.7e-05     0.055      12      57 ..      20      70 ..      17      73 .. 0.78
   2 ?   -2.3   0.0       2.4   4.7e+03      24      32 ..      92     100 ..      91     102 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.7e-05
                HHHHHHHHSTCTTB-HHHHHHHHT.....S-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 12 RrrilraLaraegltaselaerld.....lskntlsyHLrvLeeagLvevv 57
                R+++l+aL++   +    + ++++     +s + +++ Lr+L +agLv++ 
  KIR65838.1 20 RLAVLAALRDHPHVDTDTVIALVRadqptVSHQAVYDVLRALTDAGLVRRI 70
                778888886666666777777774445569******************985 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.4
                 TB-HHHHHH CS
      HTH_20  24 gltaselae 32 
                 +++++++a+
  KIR65838.1  92 CRSCGAIAD 100
                 689***997 PP

>> TOBE_3  TOBE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.4e-05     0.069       9      35 ..      65      90 ..      64      91 .. 0.88
   2 ?   -2.8   0.0         3     6e+03      15      27 ..      93     105 ..      92     108 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.4e-05
      TOBE_3  9 atvrrirpvGpivRlELerlgdtgeli 35
                + vrri+p+G+++R E+ r+gd+++++
  KIR65838.1 65 GLVRRIQPAGATARYEC-RVGDNHHHV 90
                779**************.777999875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3
      TOBE_3  15 rpvGpivRlELer 27 
                 r  G+i+ ++++ 
  KIR65838.1  93 RSCGAIADVDCAV 105
                 6679999999865 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.3   2.6e-05     0.052       7      31 ..      74      98 ..      66      99 .. 0.90
   2 ?   -0.0   0.4      0.44   8.7e+02       3       8 ..     132     137 ..     131     144 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.6e-05
                --B-EEE--TT-SS-EEEETTTTEE CS
   Nudix_N_2  7 GtpvelripdgDnreRlvCpaCgti 31
                G++ +++   gDn++  vC +Cg+i
  KIR65838.1 74 GATARYECRVGDNHHHVVCRSCGAI 98
                5667788899*************99 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.44
                 -TTT-- CS
   Nudix_N_2   3 CsqCGt 8  
                 C+ C+t
  KIR65838.1 132 CPGCAT 137
                 666665 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.2e-05     0.064       6      69 ..      21      86 ..      16     112 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.2e-05
                     SHHHHHHHHHS-EEHHHHHHT--GG.G---HHHHHHHHHHHHHTTS-EEEEE.TTEEEEE----XX CS
  Penicillinase_R  6 aevmeilwekgeatvkevveeleee.kelaysTVktllrrLvkKgllsreke.grafiYsplvsee 69
                     ++v+ +l+++ ++ ++ v++ + ++  +++ + V  +lr L++ gl++r +  g + +Y ++v  +
       KIR65838.1 21 LAVLAALRDHPHVDTDTVIALVRADqPTVSHQAVYDVLRALTDAGLVRRIQPaGATARYECRVGDN 86
                     57999****************99983456********************99889999**9998765 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00018      0.35       4      46 ..      20      68 ..      19      69 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
                HHHHHHHHTTSSEEHHHH.HHHHTS-HHHHHHH.....HHHHHHTTSEE CS
       HTH_5  4 RlkILklLaegelcvcel.aeelglsqstvShH.....LkkLreaGLVe 46
                Rl +L +L++ ++  ++   + ++  q+tvSh+     L++L +aGLV+
  KIR65838.1 20 RLAVLAALRDHPHVDTDTvIALVRADQPTVSHQavydvLRALTDAGLVR 68
                56666666666644444414667899******999999*********96 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   1.5      0.42   8.3e+02      17      31 ..      80      96 ..      74      97 .. 0.70
   2 ?   10.7   0.4    0.0002      0.39       3      22 ..     128     147 ..     127     149 .] 0.87

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.42
  Zn_ribbon_SprT 17 hlsi.rrhn.YrCrrCk 31
                    + ++ ++h    Cr C+
      KIR65838.1 80 ECRVgDNHHhVVCRSCG 96
                    55666777777899995 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0002
  Zn_ribbon_SprT   3 yvYrCtgCgreythhlsirr 22 
                     y+ +C+gC +  t++ + r+
      KIR65838.1 128 YWGTCPGCATARTAQPTQRT 147
                     9********99999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1051.06
//
Query:       KIR65839.1  [L=758]
Description: hydroperoxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-86  287.9   0.0    4.5e-45  154.1   0.0    2.3  2  peroxidase  Peroxidase


Domain annotation for each model (and alignments):
>> peroxidase  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.1   0.0   2.5e-49   4.5e-45      12     227 ..     116     419 ..     103     421 .. 0.88
   2 !  131.5   0.1     2e-42   3.7e-38       3     228 ..     428     731 ..     426     732 .. 0.88

  Alignments for each domain:
  == domain 1  score: 154.1 bits;  conditional E-value: 2.5e-49
                 TTTHCHHHHHHHHHHHTT.......SSTTSCHHHTCCHHCSGGGTTTHHHHHHHHHHHHHCTT.....S-HHHHHHHHHHHHHHCTT--..--EE---S CS
  peroxidase  12 drdmgpsllrlafhdcfv.......gGcdgsvlllepektapaNaslrkgldvldaikakleaacpgvvScADlialaardavelaggplvpvslGRrD 103
                  +++g+ ++r+ +h +++       gG+  + ++++p +++p+Na+l+k++++l+++k+k++++    +S+ADl++la+++a+e +g +++ + +GR+D
  KIR65839.1 116 FGHYGGLMIRMSWHAAGTyriedgrGGAGDGGQRFAPLNSWPDNANLDKARRLLWPVKQKYGQK----ISWADLLVLAGNVALESMGFKTFGFGFGRED 210
                 578999******************99999999******************************95....*********************99******** PP

                 -SSGGGS-S.....................................-.....-TS-HHHHHHHHHHHT--HHHHHHH.HGGGGC-EESHH......... CS
  peroxidase 104 atessasevsnl..................................P....dptasvdelrdkfarkgltdeelvaL.sGaHtiGkahcssfsrlya.. 161
                  +e++++ + ++                                  P    dp a ++ +r++f+r+ ++dee+vaL +G+Ht+Gk+h++ ++  ++  
  KIR65839.1 211 VWEPEEIFW-GPedtwlgderyasekdmtpgvgatemgliyvnpegPrgnaDPAAAAHFIRETFRRMAMDDEETVALiAGGHTFGKTHGAGVADDHVgp 308
                 ******999.4445799999999999999888888888888885553777688788888*****************************99888444335 PP

                 ........SS-GGGT.....HHS..............EETS-STHHHHHHCC..................................T-EEEHHHHHHHH CS
  peroxidase 162 ....aadpaldaayaaekC.asgnte......lvdldtptkfdnsyfknlle..................................krgllrsDqvlls 215
                     a+ +a++ ++ ++    +g+++      ++ +d+pt+++n +f+ l+                                   k ++l++D++l  
  KIR65839.1 309 epegAPLEAQGLGWLSTHGsGKGGDTitsgleVTWTDRPTEWSNRFFEILFGyewelttspggakqwvakdaeaiipdahdpakkhKPTMLTTDLSLRV 407
                 688877788888888773333333445777766667799************************************************************ PP

                 SCCCHHHHHHCC CS
  peroxidase 216 dsetralvekya 227
                 d+ ++++ +++ 
  KIR65839.1 408 DPAYEKISRRFL 419
                 *******99986 PP

  == domain 2  score: 131.5 bits;  conditional E-value: 2e-42
                 HHHHHCCCC.TTTHCHHH........HHHHHHH.......................................HTT........SSTTSCHHHTCCHHCS CS
  peroxidase   3 afvkaalka.drdmgpsl........lrlafhd.......................................cfv........gGcdgsvlllepekta 45 
                 af+ka++k  +rdmgp          +   ++d                                       + +        gG++g++++lep++++
  KIR65839.1 428 AFAKAWYKLlHRDMGPVSrflgpwvpEAQLWQDpvpavdhdlvgdadvaalkakvlasglttaqlvstawasA-AsfrstdkrGGANGARIRLEPQRSW 525
                 5788888888888988656677888877788888888888888888888888888888877777766655542.146688999**************** PP

                 GGGT..TTHHHHHHHHHHHHHCTT.....S-HHHHHHHHHHHHHHCT....T--...--EE---S-SSGGG.S-S.................-.-TS-H CS
  peroxidase  46 paNa..slrkgldvldaikakleaacpgvvScADlialaardavela....ggp.lvpvslGRrDatessa.sevsnl..............Pdptasv 122
                 + N+  +l+++l +l+ i+++++aa  +++S+ADli+la+ +ave+a    g + +vp+++GR+Da+++++ +e+ +               P ++++ 
  KIR65839.1 526 EVNQpeQLATVLATLEGIQQEFNAAGGAKISLADLIVLAGSAAVEKAardaGVEvTVPFRPGRTDASQEQTdVES-FRvmepradgfrnylrPGEKTQP 623
                 ************************9988******************99997777888**************8888.33569999999999999999999 PP

                 HH.HHHHHHHHT--HHHHHHH.HGGGGC-EESHH...........SS-GGGT....HHS........EETS-STHHHHHHCC................. CS
  peroxidase 123 de.lrdkfarkgltdeelvaL.sGaHtiGkahcssfsrlyaaadpaldaayaaekCasgntelvdldtptkfdnsyfknlle................. 202
                 +  l+d++  + lt++e+++L +G++++G++ +                          +++ v +d+p+ ++n++f+nll+                 
  KIR65839.1 624 EVlLVDRAYMLDLTAPEMTVLvGGLRALGNNVGG-------------------------TAHGVLTDRPGVLTNDFFTNLLSpgtrwkaseseehvyei 697
                 999*****************************54.........................22257789******************************** PP

                 ........T-EEEHHHHHHHHSCCCHHHHHHCCC CS
  peroxidase 203 ........krgllrsDqvllsdsetralvekyae 228
                         k++++++D+ ++s+s++ral+e+ya+
  KIR65839.1 698 rdlatdqvKWTATAVDLIFGSNSQLRALAEVYAS 731
                 ********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 4857.81
//
Query:       KIR65840.1  [L=516]
Description: RNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-13   50.7   0.0    2.1e-13   50.1   0.0    1.2  1  TROVE     TROVE domain
    0.00072   20.2   0.0     0.0018   18.9   0.0    1.7  1  VWA_2     von Willebrand factor type A domain
  ------ inclusion threshold ------
      0.013   16.0   2.4        0.1   13.1   0.0    3.2  3  PQQ_3     PQQ-like domain


Domain annotation for each model (and alignments):
>> TROVE  TROVE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   3.5e-17   2.1e-13     292     357 ..     260     323 ..     246     347 .. 0.92

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 3.5e-17
       TROVE 292 kaeVWeeLidsgklPfmAmlRnLanllrvgisarhhelvlqrLqekksviksrqfPfrfLnAhdsi 357
                  a+ We +i    ++++A+lRnL n+ ++g+ +   e v+++L+++ +v +sr+ P+rfL+A ++ 
  KIR65840.1 260 DAAAWESIIP--TMGYLALLRNLRNFDQAGVGDAVAEAVAAKLTDPGEVARSRVLPMRFLSAYNAA 323
                 5789******..9*************************************************9764 PP

>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     3e-07    0.0018       1      86 [.     350     438 ..     350     451 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3e-07
       VWA_2   1 lvfvlDtSgSmrng..dygptrleaakdaveallkslpgdrvglvtfsdgpevlipltkdkakilnalrnleak....gggtnlaaaLqlar 86 
                 +++++DtSgSm+++    g+ r+  a+      l+++     ++v+fs+ ++v+  +    +++l+a+r+ ++     gggt++++a++   
  KIR65840.1 350 TLILIDTSGSMNSTfsRDGTLRCWDAATVFGLALAAR-ARDATVVSFSHASRVFPAVAG--ESVLAAVRRFREGgyfyGGGTQTEQAIRRHY 438
                 689********99854336777777777777777774.456789****99887766655..6788889999887888899999999998644 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.7e-05       0.1       3      40 .]     326     377 ..     325     377 .. 0.83
   2 ?   -2.3   0.1       1.2     7e+03      18      28 ..     404     414 ..     398     431 .. 0.51
   3 ?    1.0   0.1      0.11   6.5e+02       9      32 ..     476     499 ..     473     503 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.7e-05
       PQQ_3   3 vlWsvqlpg....pvnsspavdgglvyvgtg..........dGtlyAlDaet 40 
                 ++W+++l      ++   pa+dg+++   ++          dGtl++ Da+t
  KIR65840.1 326 LRWAYPLERalqqALANVPALDGRTLILIDTsgsmnstfsrDGTLRCWDAAT 377
                 6899977642333444566*******************************98 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
       PQQ_3  18 avdgglvyvgt 28 
                 av+g  v ++ 
  KIR65840.1 404 AVAGESVLAAV 414
                 55554444433 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.11
       PQQ_3   9 lpgpvnsspavdgglvyvgtgdGt 32 
                 ++++v+ +p+v++++ + g +d  
  KIR65840.1 476 VGYRVGHAPTVGNRHTFGGLSDAA 499
                 5889999**********9988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3540.12
//
Query:       KIR65841.1  [L=321]
Description: carbohydrate kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-07   29.1   0.1      0.045   13.5   0.0    3.1  3  Cupin_2       Cupin domain
     0.0025   17.6   1.6        0.7    9.6   0.4    2.4  2  Cupin_6       Cupin
  ------ inclusion threshold ------
       0.03   14.2   0.0        1.1    9.2   0.0    2.4  2  AraC_binding  AraC-like ligand binding domain


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.07   4.2e+02       5      19 ..      87     101 ..      83     106 .. 0.81
   2 !   13.5   0.0   7.5e-06     0.045      37      57 ..     159     179 ..     145     182 .. 0.89
   3 !   10.6   0.1   5.9e-05      0.35      21      50 ..     266     295 ..     262     298 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.07
                 EETTEEEEEECSSSE CS
     Cupin_2   5 lppGesapshrHpge 19 
                 l+ G+  p h+Hp+ 
  KIR65841.1  87 LDAGQRLPLHVHPDR 101
                 6788999******87 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 7.5e-06
                 EEEEEETTEEEEE-TT-EEEE CS
     Cupin_2  37 eeveleaGdsvyfpagtpHrf 57 
                 +++++ aGd++++pag pH++
  KIR65841.1 159 NRIPVAAGDAILCPAGLPHAI 179
                 7899***************86 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 5.9e-05
                 EEEEEEESEEEEEECTEEEEEETTEEEEE- CS
     Cupin_2  21 effyVleGegeltvdgeeveleaGdsvyfp 50 
                 ++++V+ G g+lt +  +v++++Gd++++p
  KIR65841.1 266 AVLVVVAGAGRLTGERDDVPVRRGDTLLVP 295
                 5789*********9999**********998 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00073       4.4      52      76 ..     158     182 ..     119     213 .. 0.87
   2 !    9.6   0.4   0.00012       0.7       7      68 ..     231     297 ..     229     319 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00073
     Cupin_6  52 gepvrLsagdvvllpggephvlads 76 
                 ++++ ++agd++l+p g ph++ d+
  KIR65841.1 158 TNRIPVAAGDAILCPAGLPHAIGDG 182
                 456889****************886 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00012
     Cupin_6   7 Lagvrlrgalffrsaltapwsl.rfpag......lalhvvlrGscwlidpasgepvrLsagdvvllpgg 68 
                 Lag+r +ga ++  a+ + +++ r+++g       a++vv+ G+ +l+ ++ +  v ++ gd +l+p  
  KIR65841.1 231 LAGLRGDGARLLPEAADEFFAAhRVRGGdrlaqgFAVLVVVAGAGRLT-GE-RDDVPVRRGDTLLVPYA 297
                 66777777777777777777775443334566669*************.55.567************86 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.023   1.4e+02      42      61 ..     160     179 ..     155     182 .. 0.88
   2 ?    9.2   0.0   0.00018       1.1      22      54 ..     263     295 ..     250     296 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.023
                   EEEE-TT-EEEE-TTS-EEE CS
  AraC_binding  42 tydlgpGdlfLlppgepHdy 61 
                   +  + +Gd +L p g pH +
    KIR65841.1 160 RIPVAAGDAILCPAGLPHAI 179
                   67899*************76 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00018
                   -SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE- CS
  AraC_binding  22 deyvihyvteGtgrlrlngrtydlgpGdlfLlp 54 
                   + + + +v++G+grl+ ++  + ++ Gd +L+p
    KIR65841.1 263 QGFAVLVVVAGAGRLTGERDDVPVRRGDTLLVP 295
                   578899*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2271.88
//
Query:       KIR65842.1  [L=401]
Description: hypothetical protein TK50_11095 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-29  100.9   0.0    8.3e-29  100.4   0.0    1.2  1  ADP_PFK_GK  ADP-specific Phosphofructokinase/Glucokinase cons
    1.1e-07   31.4   0.0       0.01   15.1   0.0    2.1  2  PfkB        pfkB family carbohydrate kinase
  ------ inclusion threshold ------
      0.019   15.0   3.7       0.96    9.5   0.1    3.5  3  GST_C_2     Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> ADP_PFK_GK  ADP-specific Phosphofructokinase/Glucokinase conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.0   1.4e-32   8.3e-29       2     419 ..       6     389 ..       5     394 .. 0.79

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 1.4e-32
                 EEEEES--EEEEE.....HHHHHHHHCC-HH.HHHHHHC--SSBSSHHHHHHHHHHHHHHT--EEEEB--HHHHHHHH....CC--SEEEEESHHHHHH CS
  ADP_PFK_GK   2 kvavGynanvDai.....vdavelleklgleevkekseedhdeikskedlletfayffkkGaaaErfvenkelfeelvkaakklkkaelrmGGnagima 95 
                 +v++G + +vD       + +++l+ + g+ +  ++ + +++ ++ ++dl+ +++ ++++G++ E+fv+     e+++    ++++   ++GG     +
  KIR65842.1   6 RVVLGLGGCVDQEltltaDVLERLVTDYGIAA--AELAAPPSAVHGERDLVVSILGYVAQGRGGEHFVAAAPALETFAG---RFPHRT-TLGGTSVRAG 98 
                 799********988778777778888888887..889*******************************99998888887...999886.9********* PP

                 HHHCCTT-.EEEEE----HHHHTTS-SSEEEEEEGGG-S-.---EEEEEEE-TT-EE..TE..EE-SS-EEEEEE--STCGGTS--HHHCTTHHHHH-S CS
  ADP_PFK_GK  96 nrlakega.kvllgaklskklkellsekivvlgkpseaskekdeiHlIlEykkgekw..ge..ieapraNRfIissdpenlrlsileefkealkefkpd 189
                  +l+++g+ + l  ++++++ + ll   +  + + +    ++   HlI +y +g ++  g+  ++ap  NR+I  +dp n+ l    ++ + l   + d
  KIR65842.1  99 ILLSRLGVpSTLHLVSVNDTVRRLLPAGTAYVSSGVA---DTYHPHLIVQYHQGLRIraGDidVTAPFPNRLIYVNDPANSALLLTGDLGDRLG--HAD 192
                 ********6666666***********99875444444...33456*************954459*****************************4..47* PP

                 EEEE--GGG--TB-TTSTCHHHHHHHHHHHHHHHCCT-EEEEE----S-HHHHHHHHHHCGGG-SEEEE-HHHHHHHHHHTT-HHHCCSS...CC--HH CS
  ADP_PFK_GK 190 llvlsGlqmleeqykegkereerlekvkeqlkslknkikiHlElAsfqdeellkeilekilpyvdslGlnEqElanllsvlggeekeltevsdkepria 288
                 ++++sG++++++      e ++rl +++ ++++l+    +++E A ++++ + +++ + +l  +d  GlnE+El+  l       + l     +  ++a
  KIR65842.1 193 VFLISGFNAMRDA----AELDRRLAELRAHMRRLPPAAVTYFEDAAYHEPGFSRRVRDALLDAIDVYGLNEDELQSYLGRS---VDLL-----SADQVA 279
                 ************7....4578****************************************************98665543...3333.....347889 PP

                 HHHHHHHHHHH.....HHTT-SEEEEEETTEEEEEEETTSSS-HHHHHHHHHHHHHHHHHHHHH.-SHHHHHHHH..........HS-B-TTHHHHHHH CS
  ADP_PFK_GK 289 kvlealrkllkllkkskkrkltrihvHtlayqiiltkkesewkneaakkalakaallAarkacn.sdleklelklddsfsvskskkiplnekepvscwe 386
                 ++l a+++l+             + +Ht ++ +++ ++    ++ a  +al  ++llAa++ ++ +d+ ++ +       + ++ + p +     ++++
  KIR65842.1 280 DALTAVHALIP---------APTLVLHTKYWAAAFGTN---ARRYA--DALDTGTLLAATRYAHgDDFTDADVDR-----LRRQPRRPESV-AFAAALH 358
                 99999998888.........358999*99998888843...33444..499999998876544436666666554.....22222222222.2333334 PP

                 HCCEETTEEEEEEE-B--SS-S.--TTHHHHHHH CS
  ADP_PFK_GK 387 eeieleevevclaPvlvckkpk.kTvGlGDtISa 419
                 e     +  v+ +P    + +  +T+GlGDt+  
  KIR65842.1 359 ERL---GDRVHCVPGFALDVASpTTIGLGDTFVG 389
                 444...5666667765554443257888888765 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.8e-06      0.01     102     218 ..     165     291 ..     157     299 .. 0.87
   2 !   14.3   0.1   3.2e-06     0.019     240     273 ..     365     399 ..     352     401 .] 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.8e-06
                 EEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTE....EEEEECESSSHH..HHHHHHHHH.CTESEEEEEHHH CS
        PfkB 102 ertivfnrgaaadltkeeleededlleeadllyisgllsselpeavleelaeaaknggt....fdpnlldplgaq..fkeallell.aladllkpneeE 193
                 +r i++n++a+++l  +      d l++ad++ isg+    +  ++ ++lae++ ++      ++  + d++  +  f  +++++l   +d+  +ne+E
  KIR65842.1 165 NRLIYVNDPANSALLLTGD--LGDRLGHADVFLISGFNAMRDAAELDRRLAELRAHMRRlppaAVTYFEDAAYHEpgFSRRVRDALlDAIDVYGLNEDE 261
                 689999********99875..99*************9999999*************9998888888888888877**7777777777************ PP

                 HHHHHTSCT.....HSHHHHHHHHHHHHHT CS
        PfkB 194 lealtgekl.....edieealaalhklkak 218
                 l+  +g++      +++++al a+h+l+++
  KIR65842.1 262 LQSYLGRSVdllsaDQVADALTAVHALIPA 291
                 ********99*99999*******9998764 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 3.2e-06
                 EEEEEE.SSSS-SB..GTTHHHHHHHHHHHHHHTTH CS
        PfkB 240 elkvpavpkvkvvD..ttGAGDsfvggflaallegk 273
                 +++vp  ++ +v +  t+G GD+fvggflaal++++
  KIR65842.1 365 VHCVPG-FALDVASptTIGLGDTFVGGFLAALVRQE 399
                 445555.455555522779*************9976 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00016      0.96      29      69 .]     184     221 ..     173     226 .. 0.82
   2 ?    4.1   0.3     0.008        48       9      38 ..     307     338 ..     299     339 .. 0.76
   3 ?   -0.9   0.0      0.29   1.8e+03      10      43 ..     349     391 ..     342     396 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00016
                 TTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHHHH CS
     GST_C_2  29 fGdqptlaDialapflvrlraagpgfdireaypnlraWler 69 
                 +Gd++++aD++l+  +  +r a    ++  ++  lra+++r
  KIR65842.1 184 LGDRLGHADVFLISGFNAMRDAA---ELDRRLAELRAHMRR 221
                 9************9999998888...677888888888876 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.008
                 HHCCHCHHHCTT..T---SS.CTTCS--HHHH CS
     GST_C_2   9 eqldaaldalea..hLadspflfGdqptlaDi 38 
                 +++++  dal++  +La  +++ Gd +t aD+
  KIR65842.1 307 TNARRYADALDTgtLLAATRYAHGDDFTDADV 338
                 66777778886554788888***********7 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.29
                 HCCHCHHHCTTT---SS......CTTC.....S--HHHHHHHHH CS
     GST_C_2  10 qldaaldaleahLadsp.....flfGd.....qptlaDialapf 43 
                 + +a+ +al ++L+d++     f++ d     +++l D ++ +f
  KIR65842.1 349 ESVAFAAALHERLGDRVhcvpgFAL-DvasptTIGLGDTFVGGF 391
                 5678889999999999877774333.335444555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2764.15
//
Query:       KIR65843.1  [L=287]
Description: hypothetical protein TK50_11100 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-89  297.8   0.0    9.2e-89  297.6   0.0    1.0  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II
     0.0049   16.2   0.1      0.055   12.8   0.1    2.1  2  Amidohydro_1   Amidohydrolase family
  ------ inclusion threshold ------
      0.087   12.1   0.1        1.9    7.8   0.0    2.1  2  ThiG           Thiazole biosynthesis protein ThiG


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.6   0.0   1.5e-92   9.2e-89       4     280 .]       6     283 ..       3     283 .. 0.92

  Alignments for each domain:
  == domain 1  score: 297.6 bits;  conditional E-value: 1.5e-92
                    HHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-HHHHHHHHHHHHHHHHT...-EEEEEE----GHHHHHHHHHHS CS
  F_bP_aldolase   4 kellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyaggaealaelvraaaeaykkasvpvalhlDHgakleglkkaieag 99 
                    k++l+ A+e+ +av+afn++++ + ++++e  ee+++P+I+ +++ +++++  g    +e++  + e +++++vp+a+h DHga++e++++a + g
     KIR65843.1   6 KAILDVANEHSFAVPAFNISDWAMFRGIVEISEEKNAPLIVGIHPDEVRHI--G----REMITGIIERAHSSTVPIAIHWDHGATYEQMLQAFQYG 95 
                    899*********************************************877..4....466666666666679*********************** PP

                    -SEEEE--TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-----------..TT-TTTS--HHHHHHHHHHHH-EEEE--SS---SS--SS....--T CS
  F_bP_aldolase 100 fsSvMiDgSelpleeNialtkevverahalgvsvEaElGriggeedgv..vaeeklyTdpeeaeefveetgvdalAvaiGnvHGvykpk..pkLdf 191
                    f+SvMiDgS  p++eN+a+tk+v++ ah lgvsvE+ElG+igg+++ +   a+e +yTdp++a++fv++tgvd+lA+aiG+ HG y++   p+L++
     KIR65843.1  96 FTSVMIDGSLKPFDENLAITKKVTDSAHVLGVSVEGELGTIGGNDSYAeaGAAEIIYTDPDDAVTFVKTTGVDSLAIAIGTFHGFYPAHlkPELKL 191
                    ******************************************9995442234445*******************************9988888*** PP

                    HHHHHHHHHH.--SEE-SGTTS-HHHHHHHHHTTEEEEEE-HHHHHHHHHHHHHG.GE-HH.H-HHHHHHHHHHHHHHHHHHHHHHTT-SS- CS
  F_bP_aldolase 192 erlkeiqkav.vplVlHGgsgvpdeeirkaiklGvvKiNidtdlrlaytkavkke.kenkk.ydprkllkeaeeamkevvkekiellgsagk 280
                    ++lkei+++v +plVlHGgsg pd+eir+a++ G++KiNi td++ ay +++++   ++ k  +p+++  +  +amkev+++ki+l+g++gk
     KIR65843.1 192 DLLKEIKSRVgIPLVLHGGSGNPDDEIREAARIGINKINISTDIKVAYHDKMREVlGSDSKvREPNAIQPACLDAMKEVAAHKIDLFGATGK 283
                    ****************************************************9997455666888888888******************997 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   9.2e-06     0.055     119     178 ..      46      99 ..      31     173 .. 0.80
   2 ?    0.8   0.0     0.041   2.4e+02     132     169 ..     188     228 ..     170     273 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.2e-06
                   EEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTS CS
  Amidohydro_1 119 valapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlev 178
                   v++ p e  ++++e++  +++ a+   +p+aiH  ++ +++e++++af+      ++++v
    KIR65843.1  46 VGIHPDEVRHIGREMITGIIERAHSSTVPIAIHW-DHGATYEQMLQAFQ-----YGFTSV 99 
                   7899******************************.55788899***999.....444444 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.041
                   HHHHHHHHHHHHH.TTEEEEEE..TSSCHHHHHHHHHHTTT CS
  Amidohydro_1 132 eelkealkeakkr.dlpvaiHa..letkgevedaeaafget 169
                   e+  ++lke k r ++p++ H   ++ + e+ +a + ++++
    KIR65843.1 188 ELKLDLLKEIKSRvGIPLVLHGgsGNPDDEIREAARIGINK 228
                   44444555555555888888886555555555555555444 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.012        73     164     208 ..      58     106 ..       9     125 .. 0.76
   2 ?    7.8   0.0   0.00031       1.9     165     210 ..     192     238 ..     133     246 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.012
                 HHHHHHHHHH-...SS-BEEES---SH.HHHHHHHHTT-SEEEESHHHH CS
        ThiG 164 kealkiiieea...kvPvivDAGigsp.sdaaqamelGadavllntava 208
                 +e+++ iie+a   +vP+ +    g + ++  qa+++G+++v+++ ++ 
  KIR65843.1  58 REMITGIIERAhssTVPIAIHWDHGATyEQMLQAFQYGFTSVMIDGSLK 106
                 567777777665557999996666654267899**********987765 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00031
                 HHHHHHHHH-SS-BEEES---SHHH.HHHHHHTT-SEEEESHHHHTS CS
        ThiG 165 ealkiiieeakvPvivDAGigspsd.aaqamelGadavllntavaea 210
                   lk i +++ +P+++  G g+p d + +a  +G++ + + t +  a
  KIR65843.1 192 DLLKEIKSRVGIPLVLHGGSGNPDDeIREAARIGINKINISTDIKVA 238
                 468889999**************87367899*******999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2098.67
//
Query:       KIR65844.1  [L=280]
Description: sugar ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-16   58.5  17.8    7.1e-16   58.5  17.8    1.9  2  BPD_transp_1     Binding-protein-dependent transport system i
  ------ inclusion threshold ------
      0.021   14.2   0.5       0.39   10.2   0.1    2.7  2  ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   1.4      0.04   3.5e+02     134     171 ..      40      92 ..       9     103 .. 0.52
   2 !   58.5  17.8   7.9e-20   7.1e-16       4     176 ..      91     266 ..      88     273 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.04
  BPD_transp_1 134 wpG..lgtllleailgydyseis................nggvlalviavlllnlv 171
                   ++G  +g++   ++ g+ +++                  +   +a+++ vl l+++
    KIR65844.1  40 SNGevFGNPPQLITDGFSFDAYReilgngeqlrfflnsyI---VAGAVTVLTLLVA 92 
                   3444466666666666666655566677777777653332...2222222222222 PP

  == domain 2  score: 58.5 bits;  conditional E-value: 7.9e-20
  BPD_transp_1   4 lGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   +++la+    ++ +++++ +  +i  ++++P++ l+i+ +  +v+  +l+++  ++i++ +++++py+++++ a+l++lpk+l e  +++G + w+ 
    KIR65844.1  91 VAVLAGfafSRFTFPFQRTINAVIVSVQAVPPITLVIPYFG-LVVALGLYNTYAGLILTHMVFTLPYAIIMTTAYLNTLPKELDESVKVDGGTGWTA 186
                   5666666666888999999***************9999552.235567777777789999************************************* PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpG.....lgtllleailgydyseisnggvlalviavlllnlvadilq 176
                   ++++++P ++p +i+  +++f++++++++++++l+  +      +g +ll  + +y  ++++ ++++ + i vl+l l++   q
    KIR65844.1 187 LWRILVPISVPGLIAVGVYTFMISWNEYLFALTLTRTNDmrtvpIGIQLLMGQHSYEWNQMM-AMSILGSIPVLVLFLLF---Q 266
                   ***********************************998855555555555555555555555.66666666666655554...4 PP

>> ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   4.4e-05      0.39      16      38 ..      17      39 ..      15      43 .. 0.91
   2 ?    1.0   0.0     0.032   2.9e+02      17      34 ..     144     161 ..     142     164 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 4.4e-05
                     HHHHHHHHHHHHHHHHHHCCHHH CS
  ATP1G1_PLM_MAT8 16 gGLifAglLfivGiliilSkkck 38
                      GL+++gl  ++++l+ lS ++k
       KIR65844.1 17 TGLVLGGLFAALPVLWMLSTSFK 39
                     7*******************999 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.032
                      HHHHHHHHHHHHHHHHHC CS
  ATP1G1_PLM_MAT8  17 GLifAglLfivGiliilS 34 
                      GLi+  + f ++ +ii++
       KIR65844.1 144 GLILTHMVFTLPYAIIMT 161
                      9***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1933.11
//
Query:       KIR65845.1  [L=318]
Description: sugar ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-18   67.4  19.3    1.3e-18   67.4  19.3    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        0.1   12.6   1.0       0.29   11.1   0.3    2.0  2  DUF4357       Domain of unknown function (DUF4357)
       0.29   11.4   2.7        1.1    9.5   0.3    2.3  2  RskA          Anti-sigma-K factor rskA


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   5.8      0.43   2.6e+03      15      44 ..      26     101 ..      18     123 .. 0.53
   2 !   67.4  19.3   2.1e-22   1.3e-18       5     182 ..     112     316 ..     108     318 .] 0.81

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.43
  BPD_transp_1  15 kldkllrpliivllslPsfvlaillvlvf..............................................v 44 
                      +  r+li   +  P++vl+++l  v                                               +
    KIR65845.1  26 ARANPARRLIPYAYLSPTIVLVVVLMIVPivmvvgysfrdnvivqenpvfvgfanyakvltdldflaalkntavfI 101
                   5556666666677777777744443321133334566666666666666666666666666665555444444333 PP

  == domain 2  score: 67.4 bits;  conditional E-value: 2.1e-22
  BPD_transp_1   5 Gilaa.....lnrnkkldkllrpliivllslPsfvlaillvlvf....................vilsilghlilpviillllsaapyvrlirraal 76 
                   G+  a        +++++ ++r+++i+++ + + v+a+++ l++                     +l++ g++ ++v ++ ++s  p++++   aal
    KIR65845.1 112 GLAFAmmlntQLLSGVTKAIFRIVYILPWLFTIAVIAVIWRLLLdpagvvnyvlqtlglvqegvNWLGDPGTALWAVTFANIWSGYPFFMISLLAAL 208
                   55555522244555556666666666666666666777766666999************************************************** PP

  BPD_transp_1  77 rslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..nggvlalviavlllnlv 171
                   + ++ dl+eaa ++Ga++ ++f +v+lP++ p+i++ ++l +++   +++l+ +++++++l+t+ + ++  y  ++    ++++ a++++vlll+ v
    KIR65845.1 209 QGISADLYEAAAVDGAGPLRRFLNVTLPQLRPVIVSMAVLDLIWTSQQFALIWMMTGGGPLNTTEMLSTYTYKQAFSEyeFASASAAAVIVLLLTMV 305
                   ********************************************************88886555444444444333335599999999999999999 PP

  BPD_transp_1 172 adilqrlldpr 182
                   + +++   ++r
    KIR65845.1 306 LAFFYVRQQQR 316
                   99999888777 PP

>> DUF4357  Domain of unknown function (DUF4357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.3   1.8e+03      21      37 ..      96     112 ..      84     114 .. 0.83
   2 ?   11.1   0.3   4.8e-05      0.29      22      36 ..     286     300 ..     281     303 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.3
     DUF4357  21 eDyeFsSPSaAAsvvlG 37 
                     F S S+ A +vlG
  KIR65845.1  96 NTAVFISVSTVAHLVLG 112
                 5567999*******999 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 4.8e-05
     DUF4357  22 DyeFsSPSaAAsvvl 36 
                 +yeF S+SaAA +vl
  KIR65845.1 286 EYEFASASAAAVIVL 300
                 79***********97 PP

>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   0.00019       1.1      13      56 ..       4      53 ..       1     115 [. 0.72
   2 ?    2.3   0.1     0.031   1.9e+02      42      56 ..     282     303 ..     204     318 .] 0.69

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00019
                T-X.................................XXXXXXXXXXXXXX CS
        RskA 13 laatpqaaaaaaaaaaapppaaapaararr......laaaaAaalllvlg 56
                +  +p +a++ a++a++++p +a+a +arr      l ++++++++l++ 
  KIR65845.1  4 AHVEPVTAPQGAPPAERATPGRARANPARRlipyayLSPTIVLVVVLMIV 53
                55667777777777777777777777777799999977777777775554 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.031
                 ........XXXXXXXXXXXXXX CS
        RskA  42 r.......laaaaAaalllvlg 56 
                 +       + a aAa+++l+l 
  KIR65845.1 282 QafseyefASASAAAVIVLLLT 303
                 1556666555666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1079  (0.0601818); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2026.72
//
Query:       KIR65846.1  [L=429]
Description: sugar ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-42  146.0  10.3    2.9e-42  145.4  10.3    1.2  1  SBP_bac_8   Bacterial extracellular solute-binding protein
    7.2e-35  121.4  10.9      1e-34  120.9  10.9    1.2  1  SBP_bac_1   Bacterial extracellular solute-binding protein
    1.4e-05   25.0   0.2    0.00033   20.5   0.2    2.2  1  SBP_bac_11  Bacterial extracellular solute-binding protein
    7.2e-05   22.3   0.8      0.062   12.7   0.0    2.3  2  SBP_bac_6   Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
      0.025   14.0   0.2       0.14   11.6   0.2    2.1  1  SBP_bac_3   Bacterial extracellular solute-binding proteins, 
      0.079   12.5   0.8       0.16   11.5   0.0    1.9  2  DUF4328     Domain of unknown function (DUF4328)


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4  10.3   9.6e-46   2.9e-42       1     281 [.      60     371 ..      60     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: 145.4 bits;  conditional E-value: 9.6e-46
                 HHHHHHHHH-.TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGS.TTHHH-HHHHHTT.--TS.----EEEEEEE-E CS
   SBP_bac_8   1 klakefekkt.gvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdl.dnlddltdalaav.gydgklygvPyasetpyv 96 
                 k++++f++++ ++k+++ +a+++ + q+l +a+a++t+pd  vv  +++++  +a++g++ad+s+l  ++++ +++la++ ++dgk+y +P++    y 
  KIR65846.1  60 KIINDFTAQNpNIKIKLLSAPYASTKQQLVTAAASKTLPD--VVGLDGAWVNDFAKQGAIADMSKLmTDANYDSSQLASQiQLDGKTYMIPVVNF-VYP 155
                 6899***********************************6..789999*****************987888887766666699********9855.6** PP

                 EEEEHHHHHHS....---BHHHHHHHHHHH..HHH-..........SEGG---G.GGGGGTHHETTEE---H.....HHH.HHHHHHHHHHHHTT-EE. CS
   SBP_bac_8  97 liynkdlleka...edpktwdellaaakkl..kgkf..........glpdpasg.wlqaallakdgksldddg...gkdglkealellkklkdngkty. 175
                 l++nkdll ka   ++p+t +e+l+aakk+  +g +          + p+   + ++ + l+a++g  l+d +   +++++k ++e++k+l+d+g++  
  KIR65846.1 156 LFVNKDLLTKAgvaDVPATRSEFLDAAKKIsaTGDNvkgwalpldtAVPNGIQNdVMSW-LWASGGSMLTDGKpnlTSPQVKSTVEFVKSLNDAGVIAp 253
                 **********9999****************65344466333333332233332213333.455355556766688999999**************9555 PP

                 ....-S..--SSTTTTTSBSEEEE-TTHHHHHH-TTT..SEEEE.--.......S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH- CS
   SBP_bac_8 176 ....dtgadavsefanGevaftingswdiaaaqkagk..klgai.vp.......kqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektg 260
                      +  d v++f+nG+v ++i + + i+ ++k+++  +++++ +p       k g ++ + g+ +++++k++++ A +F+++l+s e +a+l++  +
  KIR65846.1 254 gsltMKEQDKVEKFTNGQVGMMIDSLAHINLIKKNKPdlNFEVAaLPaedgytgKRGIPYASWGIGISNSTKHKAE-AFKFVSYLMSQETNAKLSTIAN 351
                 555434456779*********************9987457777755677776665677777778***********7.********************** PP

                 --BS-S-TTTHHHHHH-HHH. CS
   SBP_bac_8 261 yipvnksaalspevkkdpalp 281
                  +p nk+a+ ++++ +dp ++
  KIR65846.1 352 GFPGNKNAE-PDFSNSDPLFK 371
                 *******99.77788888765 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9  10.9   3.5e-38     1e-34      10     314 ..      58     343 ..      51     344 .. 0.85

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 3.5e-38
                 HHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCEEE.E CS
   SBP_bac_1  10 lqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkildskv.l 107
                 +++++ ++f++++p+ik+++ s ++ s +q+l +a a+ + p Dv+  d++w+ ++ak+g+ +++++++ + +++           s+l++ ++  +  
  KIR65846.1  58 FDKII-NDFTAQNPNIKIKLLSAPYASTKQQLVTAAASKTLP-DVVGLDGAWVNDFAKQGAIADMSKLMTDANYDS----------SQLASQIQLDGkT 144
                 78888.9***********************************.*****************************8555..........4666666655579 PP

                 S.EEEEE.EEEEEEETTTHHCTTGGG.SHBHHHHHHHHHHHHHHCTCT..HCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT.HHCSHHHHSHHHHH CS
   SBP_bac_1 108 y.vPlya.argliYNkdlfekagldp.pwtWdelveaakklkekgkkp..iggarggsasgtayyfalalakslggkvfdkdgg.gldnpegvtaatyl 200
                 y +P+   +++l++Nkdl+ kag++  p t +e+++aakk+ + g +    +     +  +  + +   +++ +gg   ++ g+ +l++p  + +++++
  KIR65846.1 145 YmIPVVNfVYPLFVNKDLLTKAGVADvPATRSEFLDAAKKISATGDNVkgWALPLDTAVPNGIQNDVMSWLWASGGSMLTD-GKpNLTSPQVKSTVEFV 242
                 ******99****************************************432222223333333333444444444444433.33688888888899999 PP

                 HHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE.EEEEEEEEBTTCSTH CS
   SBP_bac_1 201 vklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi.lgayglaipkgsknp 298
                 + l+     +++   +g+++ ++++ +  f++G+++m+i++l               +++k+++++e+++ p   g +gk+gi   ++g++i++++k++
  KIR65846.1 243 KSLN-----DAGVIAPGSLTMKEQDKVEKFTNGQVGMMIDSLAH---------INLIKKNKPDLNFEVAALPAEDGYTGKRGIpYASWGIGISNSTKHK 327
                 9999.....8999*******************************.........666688888888888888888888999999999999********** PP

                 HHHHHHHHHHTSHHHH CS
   SBP_bac_1 299 eaAkkFldfllspeaq 314
                 ++A+kF+ +l s e +
  KIR65846.1 328 AEAFKFVSYLMSQETN 343
                 **********998875 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   1.1e-07   0.00033      13     224 ..      58     346 ..      51     353 .. 0.62

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.1e-07
                 HHHHHHHH.HHHH---EEEEESSHHHHHHHH....HHH..-SEEEESSH.HHHHHHHHGGGGG........................GG-EEEEEEEEE CS
  SBP_bac_11  13 lrelaaaF.eahtgvkvevsaggsgklarqi....adgarpDvwipassawlellaaaglvqa........................esavplassplv 82 
                 ++ ++++F ++++++k+++ +++ +   +q+    a+++ pDv+ ++  aw+++ a++g+++                              +      
  KIR65846.1  58 FDKIINDFtAQNPNIKIKLLSAPYASTKQQLvtaaASKTLPDVVGLDG-AWVNDFAKQGAIADmsklmtdanydssqlasqiqldgkT----Y------ 145
                 7899****7779*******99998777777766536666********8.7************99999777755555554444422221....2...... PP

                 EEESTT-.T..............T---SHHHHHHSS--EEEE--T-TTTTHH.HHHHG...GG................--.................. CS
  SBP_bac_11  83 iavpkgn.p..............kkikgwadLlkpglklavadPttspsGlaalalle...aa................ga.................. 129
                       + p               ++ g+ad+ +   ++  a  + s++G+++++ +     a                g+                  
  KIR65846.1 146 ------MiPvvnfvyplfvnkdlLTKAGVADVPATRSEFLDAAKKISATGDNVKGWALpldTAvpngiqndvmswlwasGGsmltdgkpnltspqvkst 238
                 ......131222222233333222344444444444444444444444444444333322200222222222222222233555555577777777777 PP

                 HHHHHHHHHTEEEEESSHHHHHHH.....HHTTT-SEEEEEHHHH...H..HSTTSSEEEE--TTT.--........EEEEEEEE-TT--HHHHHHHHH CS
  SBP_bac_11 130 qellkalekkvvklgessrqllta.....veageadagivyesea...kaaengdkleavylpegl.nld.....pldypaavlkkaakreaAraFlaf 214
                  e++k+l++  v  +++s ++ ++     + +g++ + i  +  +   k +++  ++e+ +lp++  ++      ++  ++++ ++++++++A +F+++
  KIR65846.1 239 VEFVKSLNDAGV-IAPGSLTMKEQdkvekFTNGQVGMMIDSLAHInliKKNKPDLNFEVAALPAEDgYTGkrgipYASWGIGISNSTKHKAEAFKFVSY 336
                 889999999988.77877666666665557888877777665544544666888899999888777433235554778888888899************ PP

                 TTSHHHHHHH CS
  SBP_bac_11 215 Lrspeaqail 224
                 L s+e+ a l
  KIR65846.1 337 LMSQETNAKL 346
                 *****99876 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.1   0.00049       1.5       2      82 ..      96     180 ..      95     205 .. 0.78
   2 !   12.7   0.0   2.1e-05     0.062     174     234 ..     310     369 ..     234     379 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00049
   SBP_bac_6   2 plpdlilsfdkdflekfieeglfqpldpanlpnvnkdfaeeglkdp.dgkyypygvgplv..lavnkdrlkgrpv...PksWaDLld 82 
                  lpd++  +d  ++  f+++g ++++ ++ + + n d ++     + dgk y++ v+ +v  l vnkd l++  v   P + +++ld
  KIR65846.1  96 TLPDVVG-LDGAWVNDFAKQGAIADM-SKLMTDANYDSSQLASQIQlDGKTYMIPVVNFVypLFVNKDLLTKAGVadvPATRSEFLD 180
                 589*995.****************98.6888888888875555555567776666666554499****9999888777877777776 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.1e-05
   SBP_bac_6 174 Galvspifmlvkkg.kkkelakafidfllspevqailakaggvfPvvtnpavlnelpegakl 234
                 G ++    + + ++ k+k++a +f+ +l+s+e+ a l+   + fP   n+++++++ +  +l
  KIR65846.1 310 GIPYASWGIGISNStKHKAEAFKFVSYLMSQETNAKLSTIANGFPG--NKNAEPDFSNSDPL 369
                 5566666666777788************************999**6..66666666555554 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   4.6e-05      0.14      52      96 ..      51     139 ..      36     314 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.6e-05
                 HHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETT............................................S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................x RF
   SBP_bac_3  52 palksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkd............................................a 96 
                 ++l +g +D +i+++t +    +  ++s py s++q+l++ +++                                            +
  KIR65846.1  51 AELPAGDFDKIINDFTAQNPNIKIKLLSAPYASTKQQLVTAAASktlpdvvgldgawvndfakqgaiadmsklmtdanydssqlasqiQ 139
                 46789***********************************9644455555555555555555555555555555555555555555550 PP

>> DUF4328  Domain of unknown function (DUF4328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.4       1.4   4.1e+03      17      32 ..       9      24 ..       3      27 .. 0.46
   2 ?   11.5   0.0   5.3e-05      0.16      65      88 ..     145     168 ..     143     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.4
     DUF4328 17 velagllalllllaaa 32
                 +l+g +++++++a++
  KIR65846.1  9 KRLIGAVTVAATVATV 24
                4444444444444443 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 5.3e-05
     DUF4328  65 wlvPvvnLvlPlqvvadlwrasap 88 
                 +++Pvvn+v+Pl v +dl +++  
  KIR65846.1 145 YMIPVVNFVYPLFVNKDLLTKAGV 168
                 68****************887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3072.91
//
Query:       KIR65847.1  [L=279]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-41  142.4   0.3    1.9e-41  141.7   0.3    1.3  1  DeoRC         DeoR C terminal sensor domain
    2.8e-18   65.4   0.2    6.7e-18   64.2   0.1    1.7  1  HTH_DeoR      DeoR-like helix-turn-helix domain
    7.4e-08   32.2   0.0      2e-07   30.9   0.0    1.8  1  HTH_11        HTH domain
      2e-06   27.4   0.1    4.6e-06   26.2   0.1    1.6  1  GntR          Bacterial regulatory proteins, gntR family
    6.6e-05   22.7   0.4    0.00018   21.3   0.4    1.8  1  MarR_2        MarR family
    0.00056   19.9   0.7      0.003   17.6   0.0    2.6  3  HTH_20        Helix-turn-helix domain
     0.0022   17.9   0.0     0.0055   16.6   0.0    1.7  1  HTH_Crp_2     Crp-like helix-turn-helix domain
     0.0026   17.1   0.2       0.33   10.4   0.0    2.6  2  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
     0.0027   17.8   0.1     0.0057   16.8   0.1    1.6  1  HTH_28        Helix-turn-helix domain
      0.003   17.3   0.0     0.0067   16.2   0.0    1.6  1  MerR          MerR family regulatory protein
     0.0032   17.0   0.0      0.014   14.9   0.0    2.2  3  HTH_24        Winged helix-turn-helix DNA-binding
     0.0051   16.9   0.0      0.012   15.7   0.0    1.5  1  FeoC          FeoC like transcriptional regulator
  ------ inclusion threshold ------
      0.011   16.1   0.1      0.039   14.3   0.0    1.9  2  FaeA          FaeA-like protein
      0.014   15.5   0.0      0.032   14.3   0.0    1.6  1  SpoIIID       Stage III sporulation protein D
      0.017   15.1   0.0      0.057   13.3   0.0    1.9  1  MarR          MarR family
      0.019   14.7   0.1       0.06   13.2   0.1    1.8  1  HTH_IclR      IclR helix-turn-helix domain
      0.023   14.7   0.0      0.047   13.7   0.0    1.5  1  EutK_C        Ethanolamine utilization protein EutK C-terminu
      0.044   13.1   0.0       0.11   11.8   0.0    1.6  1  EAP30         EAP30/Vps36 family
      0.056   13.8   0.0       0.16   12.3   0.0    1.8  1  Rrf2          Transcriptional regulator
      0.071   13.2   0.1        0.2   11.7   0.1    1.8  1  HTH_29        Winged helix-turn helix
      0.094   13.0   0.1       0.19   11.9   0.1    1.5  1  PaaX          PaaX-like protein
      0.098   12.5   0.1         23    4.9   0.0    2.7  2  LacI          Bacterial regulatory proteins, lacI family
       0.11   12.0   0.0       0.54    9.8   0.0    2.2  2  Sigma70_r4    Sigma-70, region 4
       0.13   12.2   0.0       0.32   10.9   0.0    1.6  1  HTH_5         Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.7   0.3   2.5e-44   1.9e-41       3     160 .]      87     248 ..      86     248 .. 0.94

  Alignments for each domain:
  == domain 1  score: 141.7 bits;  conditional E-value: 2.5e-44
       DeoRC   3 aeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealr....qfnvdkaf 97 
                  +eK++IA +Aa l++dg+ti++++GtTtl+lar+L+++++ltv Tn+l v  +L ++   ++++ GG vr+ + ++vgp+  +a       ++ d+a+
  KIR65847.1  87 EREKEKIATLAAGLVQDGSTIMINGGTTTLALARNLRQHRDLTVATNNLLVPGALPATAVRDIYIFGGAVRSLTLATVGPVSFRANTgaelDVSCDLAL 185
                 589*****************************************************************************98777541112567799** PP

       DeoRC  98 lgangidaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitDk 160
                 +g+ ++da++g tts+++ea++ ++++++a+rv +laDssKfg+r f+++ +l   d+l+tD+
  KIR65847.1 186 IGVGAVDADAGYTTSNLAEAAMMQEMLSRATRVAILADSSKFGRRLFAQVSELGVADYLVTDR 248
                 **************************************************************6 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.1     9e-21   6.7e-18       1      55 [.      16      70 ..      16      72 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 9e-21
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsis 55
                R +q+  ++++ g ++v el+e++gvS  T+RRDL++L+++g+l+Rt+GGavs+ 
  KIR65847.1 16 RKAQLAAYVADAGQVTVGELAERFGVSIDTVRRDLDQLSAEGVLVRTYGGAVSLA 70
                899************************************************9975 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   2.6e-10     2e-07      11      46 ..      25      60 ..      16      65 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.6e-10
      HTH_11 11 eargpisgeeLAeeLnvSrrtvrrdIkaLeelgvpI 46
                +  g+++  eLAe+++vS  tvrrd+++L++ gv +
  KIR65847.1 25 ADAGQVTVGELAERFGVSIDTVRRDLDQLSAEGVLV 60
                55678****************************765 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   6.2e-09   4.6e-06      26      61 ..      31      66 ..      24      68 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 6.2e-09
                -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCE CS
        GntR 26 sereLaaefgVsrttvReALrrLeaeglverrqgrG 61
                ++ eLa++fgVs  tvR+ L++L+aeg+++r  g++
  KIR65847.1 31 TVGELAERFGVSIDTVRRDLDQLSAEGVLVRTYGGA 66
                789***************************988765 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.4   2.4e-07   0.00018       7      54 ..      17      62 ..      12      82 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.4e-07
                HHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2  7 qarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54
                 a++ a++++++   +tvgela+r+g+s  +v r l+ L+a G ++r+
  KIR65847.1 17 KAQLAAYVADAGQ--VTVGELAERFGVSIDTVRRDLDQLSAEGVLVRT 62
                5778889999998..****************************99876 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     4e-06     0.003      20      55 ..      25      60 ..      10      65 .. 0.82
   2 ?   -1.5   0.0       3.5   2.6e+03      22      35 ..     110     123 ..      94     135 .. 0.75
   3 ?   -2.5   0.0       7.3   5.5e+03      26      34 ..     198     206 ..     190     222 .. 0.53

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4e-06
                STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
      HTH_20 20 araegltaselaerldlskntlsyHLrvLeeagLve 55
                a+a+ +t++elaer+++s  t+++ L++L+  g + 
  KIR65847.1 25 ADAGQVTVGELAERFGVSIDTVRRDLDQLSAEGVLV 60
                78999************************8877654 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.5
                 CTTB-HHHHHHHHT CS
      HTH_20  22 aegltaselaerld 35 
                 ++g t  +la+ l+
  KIR65847.1 110 NGGTTTLALARNLR 123
                 67889999999884 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 7.3
                 -HHHHHHHH CS
      HTH_20  26 taselaerl 34 
                 t s lae+ 
  KIR65847.1 198 TTSNLAEAA 206
                 555555543 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   7.4e-06    0.0055      22      54 ..      30      62 ..      11      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.4e-06
                HHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrilseLkreglisrg 54
                +t  elA++ G++  tv r l +L+ eg++ r 
  KIR65847.1 30 VTVGELAERFGVSIDTVRRDLDQLSAEGVLVRT 62
                7889*************************9953 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00045      0.33      23      46 ..      27      48 ..      18      54 .. 0.76
   2 ?    4.3   0.0     0.035        26       5      33 ..     190     220 ..     188     220 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00045
  HTH_Tnp_ISL3 23 lllesrsvkavArqlgvSwtTVwr 46
                  +     +v + A+++gvS +TV+r
    KIR65847.1 27 A--GQVTVGELAERFGVSIDTVRR 48
                  4..44688899************9 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.035
  HTH_Tnp_ISL3   5 warrrsriTl..rleayilelllesrsvkav 33 
                    +++ +++T+  ++ea+ ++++l+++++ a+
    KIR65847.1 190 AVDADAGYTTsnLAEAAMMQEMLSRATRVAI 220
                   578889999999***********99998775 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   7.6e-06    0.0057       1      35 [.      16      52 ..      16      62 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.6e-06
      HTH_28  1 qRleiiklla.aGh.svreaArelgisrrtvyrWikr 35
                ++++   ++a aG  +v e+A+++g+s +tv+r + +
  KIR65847.1 16 RKAQLAAYVAdAGQvTVGELAERFGVSIDTVRRDLDQ 52
                588889999955766****************985555 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     9e-06    0.0067       1      18 [.      31      48 ..      31      49 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9e-06
                EHHHHHHHHTTTHHHHHH CS
        MerR  1 tIgevAeltGvsprtLRy 18
                t+ge+Ae++Gvs++t+R+
  KIR65847.1 31 TVGELAERFGVSIDTVRR 48
                89***************5 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.9e-05     0.014      14      47 ..      26      59 ..      20      60 .. 0.86
   2 ?   -3.0   0.0       7.7   5.7e+03      15      26 ..     110     121 ..     108     122 .. 0.86
   3 ?   -3.1   0.0       7.9   5.9e+03      13      25 ..     192     204 ..     190     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.9e-05
      HTH_24 14 knprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                + +  +  eLAer g+S+ tv+r l++L  eG++
  KIR65847.1 26 DAGQVTVGELAERFGVSIDTVRRDLDQLSAEGVL 59
                45669*********************99999986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.7
      HTH_24  15 nprisqreLAer 26 
                 n++++   LA+ 
  KIR65847.1 110 NGGTTTLALARN 121
                 899999999986 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 7.9
      HTH_24  13 qknprisqreLAe 25 
                  ++++ + + LAe
  KIR65847.1 192 DADAGYTTSNLAE 204
                 6799999999998 PP

>> FeoC  FeoC like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.5e-05     0.012       4      45 ..      19      60 ..      18      69 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.5e-05
        FeoC  4 elkeyleergrvslkeLsrhfkaspealeamLeqwvrkGrve 45
                +l +y++  g+v ++eL+ +f +s ++++  L+q+ + G + 
  KIR65847.1 19 QLAAYVADAGQVTVGELAERFGVSIDTVRRDLDQLSAEGVLV 60
                899*******************************99988765 PP

>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.2e-05     0.039       7      48 ..      22      62 ..      16      66 .. 0.86
   2 ?   -1.8   0.0       5.8   4.3e+03      14      25 ..     195     206 ..     189     211 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.2e-05
                HHHHH.S----HHHHHHHHTS-HHHHHHHHHHHHHHSSEEEE CS
        FaeA  7 eylnsikapckTreiAdalglsaYQaRyYLeqLekegkikrs 48
                 y+ +  + ++  e+A+ +g+s+  +R  L qL +eg + r+
  KIR65847.1 22 AYVAD-AGQVTVGELAERFGVSIDTVRRDLDQLSAEGVLVRT 62
                56666.6778899************************99886 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5.8
                 ----HHHHHHHH CS
        FaeA  14 apckTreiAdal 25 
                 a+ +T+++A+a+
  KIR65847.1 195 AGYTTSNLAEAA 206
                 788999***997 PP

>> SpoIIID  Stage III sporulation protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.3e-05     0.032       7      41 ..      16      51 ..      10      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.3e-05
     SpoIIID  7 Rvleiakyives.katvRkaakvfgvskstvhkDvt 41
                R  ++a+y+ +  + tv + a+ fgvs  tv +D+ 
  KIR65847.1 16 RKAQLAAYVADAgQVTVGELAERFGVSIDTVRRDLD 51
                778999***986378*******************85 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.7e-05     0.057      14      49 ..      26      61 ..      23      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.7e-05
                HSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        MarR 14 eqgplsvseLakklgvskstvtrvldrLekkGlieR 49
                + g+ +v eLa+++gvs+ tv r ld+L  +G + R
  KIR65847.1 26 DAGQVTVGELAERFGVSIDTVRRDLDQLSAEGVLVR 61
                68999***********************99998887 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     8e-05      0.06      11      50 ..      23      61 ..      16      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8e-05
                T-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR 11 alaeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                ++a a+q +t+ elA+r+g++  tv+R L  L  +G + +
  KIR65847.1 23 YVADAGQ-VTVGELAERFGVSIDTVRRDLDQLSAEGVLVR 61
                5677777.7***************************9876 PP

>> EutK_C  Ethanolamine utilization protein EutK C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.4e-05     0.047      17      47 ..      29      59 ..      13      63 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.4e-05
      EutK_C 17 GmtaGevaahfaWPLekarqvLeqLfsdGaL 47
                 +t Ge a  f+  ++  r+ L+qL ++G L
  KIR65847.1 29 QVTVGELAERFGVSIDTVRRDLDQLSAEGVL 59
                379*************************998 PP

>> EAP30  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00015      0.11     189     234 ..      19      61 ..       4      62 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00015
       EAP30 189 sllaekssgggvtaselaeeeenlgwsvarakeaLeelereGllwv 234
                 +l+a   ++g vt+ elae+   +g+s++ +++ L++l +eG+l++
  KIR65847.1  19 QLAAYVADAGQVTVGELAER---FGVSIDTVRRDLDQLSAEGVLVR 61 
                 44444444467******888...********************997 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00022      0.16      22      58 ..      26      62 ..      18      75 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00022
                TCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        Rrf2 22 eeepvsseeiaerqnispsylekilakLrkaglvksv 58
                + ++v++ e+aer+++s   +++ l +L+ +g++  +
  KIR65847.1 26 DAGQVTVGELAERFGVSIDTVRRDLDQLSAEGVLVRT 62
                4455****************************75433 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00026       0.2       9      41 ..      26      58 ..      19      77 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00026
      HTH_29  9 aeGvstvsqiAkllglsrrtvyrwlkrfeegGl 41
                + G+ tv ++A++ g+s +tv+r l+   ++G+
  KIR65847.1 26 DAGQVTVGELAERFGVSIDTVRRDLDQLSAEGV 58
                567779*******************99999994 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00026      0.19      19      62 ..      28      68 ..      20      75 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00026
        PaaX 19 gaiwlgsLirllaelGiseslvRaalsRlakaGwlvrekegrrs 62
                g++ +g+L    + +G+s  +vR  l  l+++G lvr+  g+ s
  KIR65847.1 28 GQVTVGEL---AERFGVSIDTVRRDLDQLSAEGVLVRTYGGAVS 68
                55666665...689***********************9998655 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.031        23       3      18 ..      33      48 ..      31      55 .. 0.83
   2 ?    4.8   0.0     0.033        25      11      18 ..      67      74 ..      65      98 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.031
                HHHHHHCTS-HHHHHH CS
        LacI  3 kDVArlAGVSkaTVSr 18
                 ++A++ GVS  TV r
  KIR65847.1 33 GELAERFGVSIDTVRR 48
                589***********77 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.033
                S-HHHHHH CS
        LacI 11 VSkaTVSr 18
                VS aTVSr
  KIR65847.1 67 VSLATVSR 74
                9******9 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00073      0.54      21      39 ..      30      48 ..      20      52 .. 0.90
   2 ?   -3.4   0.0       9.8   7.3e+03      12      27 ..      58      73 ..      58      75 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00073
                --HHHHHHHHTS-HHHHHH CS
  Sigma70_r4 21 lTleEIgerlgiSrerVrq 39
                 T  E++er+g+S  +Vr+
  KIR65847.1 30 VTVGELAERFGVSIDTVRR 48
                6999**************7 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.8
                HHHHHHTTT--HHHHH CS
  Sigma70_r4 12 vlelrfgeglTleEIg 27
                vl+  +g   +l+ ++
  KIR65847.1 58 VLVRTYGGAVSLATVS 73
                5666777776766654 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00043      0.32      11      44 ..      24      58 ..      18      60 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00043
                HTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
       HTH_5 11 Lae.gelcvcelaeelglsqstvShHLkkLreaGL 44
                +a+ g+ +v+elae +g+s  tv++ L +L  +G+
  KIR65847.1 24 VADaGQVTVGELAERFGVSIDTVRRDLDQLSAEGV 58
                5666888***********************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2365.52
//
Query:       KIR65848.1  [L=305]
Description: aldo/keto reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-21   76.4   0.0    1.2e-19   70.6   0.0    2.0  2  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
      0.088   13.1   0.1       0.22   11.8   0.1    1.6  1  HTH_Tnp_1     Transposase
       0.12   12.5   8.3       0.85    9.7   0.2    3.1  3  DUF1707       Domain of unknown function (DUF1707)


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0     2e-23   1.2e-19      16     197 ..      43     234 ..      12     245 .. 0.79
   2 !    4.1   0.0    0.0037        22     246     286 ..     245     285 ..     241     289 .. 0.85

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 2e-23
                   -HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE......--SSSTTSSSS-HH..........HHHHHHHHHHHH CS
  Aldo_ket_red  16 skeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv......dlrdaeiksglske..........niresleeslkr 96 
                    ++ a ell++a+ aGi+++D+A++Y  g++ee+l+++l + r + ++v++ +K+      +     ++++  +e            +++l e++  
    KIR65848.1  43 MRARAHELLDQAYAAGIRYVDVARSY--GRAEEFLAQWLRA-RPDADDVVVGSKWgytytaG-----WRVD--AEvhetkdhgvaTFTRQLGETRAL 129
                   56778899******************..*************.*************7555542.....2222..222244455677888888888888 PP

                   HT-S-EEEEEE-S--TTS-...HHHHHHHHHHHHHTTSEEEEEEES--.HHHHHHH...HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEE CS
  Aldo_ket_red  97 LgtdyvDllllHrpdpslp..sieevldaleelvkeGkiraiGvSnfs.veqleka...kkkkkvkivavqveynllreleeegllelckkkgvpli 187
                   Lg d++Dl+++H ++p++p  + +++ + l++l  +G + ++++S+ + +e +++a   + ++   + +vq+ +nll++ +   l e+    g  ++
    KIR65848.1 130 LG-DRLDLYQIHSVTPDSPalRDADLHRRLADLAAQGTVVGLSTSGPAqAETIRAAlgvRVDGRPLFRSVQATWNLLEPSAGPALGEAHG-AGCLVV 224
                   88.****************88788999******************9999*******9999999999***********4443333333333.366666 PP

                   EBSTTGGGTT CS
  Aldo_ket_red 188 aysplggGll 197
                   + ++l++G l
    KIR65848.1 225 VKEALANGRL 234
                   6666666665 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0037
                   HHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHH CS
  Aldo_ket_red 246 lalryalsqpavgivipgasnieqlednldalelklseeev 286
                   +al+ al qp  ++v+ ga + +ql  nl+a+e + +++ +
    KIR65848.1 245 AALAAALRQPWATVVLSGAATGDQLASNLRAQECTGDPDRW 285
                   57777899999*********************887776665 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   3.7e-05      0.22      15      46 ..      50      81 ..      44      90 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.7e-05
   HTH_Tnp_1 15 iVreslepgksvsevArrhgvspnqLykWrrq 46
                ++ +++ +g ++++vAr++g  ++ L +W r+
  KIR65848.1 50 LLDQAYAAGIRYVDVARSYGRAEEFLAQWLRA 81
                677899***********************875 PP

>> DUF1707  Domain of unknown function (DUF1707)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.3   0.00098       5.9       6      22 ..      42      58 ..      38      59 .. 0.89
   2 ?   -3.6   0.2         2   1.2e+04      43      52 ..     152     161 ..     150     164 .. 0.65
   3 ?    9.7   0.2   0.00014      0.85      14      42 ..     224     252 ..     212     259 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00098
     DUF1707  6 adReravelLrealaeG 22
                a R ra elL++a+a+G
  KIR65848.1 42 AMRARAHELLDQAYAAG 58
                679************99 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2
     DUF1707  43 geLaalvaDL 52 
                 ++L++ +aDL
  KIR65848.1 152 ADLHRRLADL 161
                 4666666666 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00014
     DUF1707  14 lLrealaeGrLtldEfdeRleaalaArtr 42 
                 +++eala+GrL + E+    +aalaA  r
  KIR65848.1 224 VVKEALANGRLAVGEHAPGDAAALAAALR 252
                 689**************999999999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2309.75
//
Query:       KIR65849.1  [L=307]
Description: hypothetical protein TK50_11130 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-24   84.8   0.0    2.2e-23   82.7   0.0    1.7  1  adh_short     short chain dehydrogenase
    3.9e-10   39.7   0.0    5.5e-10   39.2   0.0    1.3  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.5e-05   25.0   0.2    2.4e-05   24.3   0.2    1.3  1  KR            KR domain
    8.1e-05   22.2   0.0    0.00011   21.7   0.0    1.2  1  Epimerase     NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.14   12.0   0.2       0.23   11.3   0.2    1.3  1  YjeF_N        YjeF-related protein N-terminus


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.0   6.2e-27   2.2e-23       2     189 ..      19     220 ..      18     223 .. 0.91

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 6.2e-27
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 +++vtGassG+G ai ++la++Ga+v+++ r   k  +v + l++e  +a++ + ++D+ d + ++++ +  +++  ++d+LvnN Gi   +   +ls 
  KIR65849.1  19 TIVVTGASSGLGVAITRHLAARGARVIMAVRDTGKGDRVRDRLRAEhpKADLDVRHLDLLDLDTARRFADGLRAERVTVDALVNNGGI--GNVPRRLSP 115
                 79********************************************999999************************************..345568999 PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEE............GGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT..EEEEEEEESSBS CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsS............vagkvpvagvaaYsAsKaavagltrslakelaptg..irvnavaPGlvd 183
                 + +e+ +++N  g f lt ++l+ + +++   +v+v+S             a++ ++    aY++sK a + ++ +l + l+     +r    +PG+ +
  KIR65849.1 116 QGVESQLATNHLGHFALTGLLLDRLAEGRDPVVVTVASglyrlgrldlddLAAERRYSRSGAYATSKLANVLFALELDRRLRAADspVRSLLAHPGVAR 214
                 99************************************44444444444447899999********************999888778************ PP

                 SHHHHH CS
   adh_short 184 Tdmake 189
                 Td+ ++
  KIR65849.1 215 TDLDRD 220
                 **9876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   1.5e-13   5.5e-10       1     128 [.      24     153 ..      24     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 1.5e-13
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE...EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae...vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsre 93 
                   Ga sg+G ai ++la++Ga+v+++ ++  + ++  ++l +e++++   v ++D  d ++ +++++ ++++  ++D lvnn gi +        +s +
    KIR65849.1  24 GASSGLGVAITRHLAARGARVIMAVRDTGKgDRVRDRLRAEHPKAdldVRHLDLLDLDTARRFADGLRAERVTVDALVNNGGIGNV----PRRLSPQ 116
                   899************************9996666677888887544557************************************9....4689*** PP

                   HHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEE CS
  adh_short_C2  94 efdraldvnlyslfllakaalplmkeg..gsivnlss 128
                   +++  l++n  + f+l+  +l  ++eg    +v+++s
    KIR65849.1 117 GVESQLATNHLGHFALTGLLLDRLAEGrdPVVVTVAS 153
                   **********************888885555666555 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.2   6.6e-09   2.4e-05       2      90 ..      19     105 ..      18     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 6.6e-09
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAg 90 
                 t ++tG+  gLG +++r+la++gar ++ +  +  + ++ +++++  e+  a+ +v+++D+ d d  ++  + ++ae  ++   ++  g
  KIR65849.1  19 TIVVTGASSGLGVAITRHLAARGARVIMAVRDT-GKGDRVRDRLR-AEHPKADLDVRHLDLLDLDTARRFADGLRAERVTVDALVNNGG 105
                 579*********************988877555.66777776776.577799**********************999988888877655 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   3.2e-08   0.00011       1     148 [.      20     184 ..      20     195 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 3.2e-08
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHH.....HHT-SEEEE--S---HHHHHHSH.. CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfk.....eeqpdavihlAavggvaassedp.. 84 
                 i+VtGa+  +G a++++l+++g +vi   r++ ++ + r++          ++ +ldl+d +  +r+ +     ++ +da ++ +++g+v+++ + +  
  KIR65849.1  20 IVVTGASSGLGVAITRHLAARGARVIMAVRDTGKGDRVRDRLRaehpkadlDVRHLDLLDLDTARRFADglraeRVTVDALVNNGGIGNVPRRLSPQgv 118
                 89*****************************888877766655999*****999********9999976222224477888888888888887655411 PP

                 HHHHHHHTHHHHHHHHHHHHH...TCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHH CS
   Epimerase  85 adfieknlqgtlnlleaarka...gvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKla 148
                 +  + +n  g   l   + ++   g + ++    s +Y  +     ++ + +  +  + +Ya +Kla
  KIR65849.1 119 ESQLATNHLGHFALTGLLLDRlaeGRDPVVVTVASGLYRLGRLD-LDDLAAERRYSRSGAYATSKLA 184
                 45566777777777777665533344455555555566544442.3344444455666666666666 PP

>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   6.6e-05      0.23      35     117 ..      23     108 ..       2     120 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.6e-05
      YjeF_N  35 sgnnGgdglaaArhLaqegakVtvllleeeekldedaeralellkkaggkvveekpeedleekls.....apvdlviDAllGiglrge 117
                  g + g g+a+ rhLa +ga+V++  +++  k+d++  r  ++  ka  +v + +  + ++ +       +   + +DAl+  g  g+
  KIR65849.1  23 TGASSGLGVAITRHLAARGARVIM-AVRDTGKGDRVRDRLRAEHPKADLDVRHLDLLDLDTAR-RfadglRAERVTVDALVNNGGIGN 108
                 4667899***************99.67777788877777777777777777776666554332.257888888888888876665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2453.38
//
Query:       KIR65850.1  [L=510]
Description: cell wall anchor protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-06   27.1   5.2      0.035   14.4   0.1    4.4  3  DUF11           Domain of unknown function DUF11
  ------ inclusion threshold ------
        0.2   11.8   0.2        0.2   11.8   0.2    2.7  3  Keratin_2_head  Keratin type II head


Domain annotation for each model (and alignments):
>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.015   1.3e+02      65      85 ..     122     142 ..      89     147 .. 0.74
   2 !    8.7   0.1   0.00023         2      10      35 ..     165     190 ..     154     235 .. 0.92
   3 !   14.4   0.1   3.9e-06     0.035      16      84 ..     312     430 ..     292     436 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.015
       DUF11  65 eagesatlsftvrvtrtaasg 85 
                 e+g + tl+ftv+++  ++ +
  KIR65850.1 122 EPGRQGTLAFTVTAPGVGTAT 142
                 899999999999999888754 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00023
       DUF11  10 vrpGdtvtytltvtNtgpasangvvv 35 
                  rpG+ v++ l vtN+g+++  g+v+
  KIR65850.1 165 GRPGARVDVPLAVTNRGTKAVRGAVL 190
                 69******************999987 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 3.9e-06
       DUF11  16 vtytltvt..NtgpasangvvvtDtl..................................Paglayvsvsas............qgtasaltsv..gsL 64 
                 +++tltv    +g a+a+g++vt  +                                  P+g+++v+vs s            ++ a++  ++  g++
  KIR65850.1 312 TRVTLTVAgdQRGDAAAQGATVTGAVgatvpmtvgyrnngparvgpngqrglniativtlPEGVTAVTVSKScvdpdedewqpgKPGARVYECSarGTI 410
                 455555531145666667777777777777777777777777777777777777788888**********************99777777777789*** PP

       DUF11  65 eagesatlsftvrvtrtaas 84 
                   ge+ t++f++r  r++++
  KIR65850.1 411 GEGERVTFEFALRIDRAGSR 430
                 *************9999886 PP

>> Keratin_2_head  Keratin type II head
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.41   3.7e+03      65      65 ..     126     126 ..      73     160 .. 0.48
   2 ?   11.8   0.2   2.3e-05       0.2      87     149 ..     323     387 ..     290     394 .. 0.65
   3 ?   -1.4   2.9      0.25   2.2e+03      81     116 ..     463     494 ..     448     501 .. 0.36

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.41
  Keratin_2_head  65 g 65 
                     +
      KIR65850.1 126 Q 126
                     1 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.3e-05
  Keratin_2_head  87 fggGvglgfgagggvG..ggfGgggglvGgggfGg.ggfGggGfGgpvcppgGIqeVtinqsLLqP 149
                      g ++++g ++ g+vG  + + +g +  G + +G  g  G   +   v+ p G+++Vt+ +s   P
      KIR65850.1 323 RGDAAAQGATVTGAVGatVPMTVGYRNNGPARVGPnGQRG-LNIATIVTLPEGVTAVTVSKSCVDP 387
                     3333445555667777224444444447888888844444.55667999************98887 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.25
  Keratin_2_head  81 ggfglGfggGvglgf.gagggvGggfGgggglvGggg 116
                     g    G+ggG  +++  +g  +G+  G gg lv ++g
      KIR65850.1 463 G----GTGGGDEGSLpITGLPTGLIAGLGGLLV-AAG 494
                     1....2222211111012222222222222111.112 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3654.98
//
Query:       KIR65851.1  [L=262]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-14   53.3   0.0    7.9e-14   52.1   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    7.7e-12   45.7   0.0    1.5e-11   44.8   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    2.3e-10   40.5   0.0    4.4e-10   39.6   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
    1.9e-09   37.2   0.0    2.7e-09   36.7   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    6.7e-07   29.3   0.0    3.3e-06   27.1   0.0    1.9  1  Methyltransf_23  Methyltransferase domain
      1e-06   29.4   0.0    1.8e-06   28.6   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    0.00014   21.5   0.1     0.0027   17.3   0.1    2.1  2  MTS              Methyltransferase small domain
     0.0044   16.8   0.0     0.0065   16.2   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
  ------ inclusion threshold ------
      0.015   15.4   0.1      0.025   14.7   0.1    1.3  1  FtsJ             FtsJ-like methyltransferase
      0.039   13.2   0.0       0.06   12.6   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
      0.067   13.2   0.0        0.1   12.6   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
       0.11   12.0   0.0       0.17   11.4   0.0    1.2  1  DOT1             Histone methylation protein DOT1


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   5.3e-17   7.9e-14       1      97 []      40     137 ..      40     137 .. 0.90

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 5.3e-17
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBS.....SSTTTEEEEEEESTGGGSSHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlp.....fedgsfDlvvssgalhhlsdedlekalke 88 
                      v+dlGcGtG+ltl la+r+  + v+gvD+ ++ml+ ar+ a ++g+ n+ ++ g   dlp     + +g++ + +++ a+h+++   ++++++ 
       KIR65851.1  40 VVDLGCGTGQLTLPLAARV--GAVIGVDPEPDMLALARRAALDAGVtNAGWLLGADGDLPtlgrlLGEGTVGALTVAVAIHFMD---RDTLFRS 128
                      89****************9..8*************************9999888878887555656999*****9987788765...679**** PP

                      HHHHEEEEE CS
  Methyltransf_25  89 iarvLkpgG 97 
                      ++ +L+pgG
       KIR65851.1 129 ARPLLRPGG 137
                      ********9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   9.8e-15   1.5e-11       1      94 [.      41     139 ..      41     141 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 9.8e-15
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTS.....S-TT-EEEEEEES-CCC-CCHHHHHHHHHHHE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.kvefvvadaeklp.....fednsfDlvvssevlhhvedpekalkeiaRvL 88 
                      +d+GcGtG+l+ +la r++ v+gvD+ + ml+la+++a ++g+ +  ++ +   +lp     + ++++ + ++  ++h++ d++ +++ ++ +L
       KIR65851.1  41 VDLGCGTGQLTLPLAARVGAVIGVDPEPDMLALARRAALDAGVtNAGWLLGADGDLPtlgrlLGEGTVGALTVAVAIHFM-DRDTLFRSARPLL 133
                      59*************999************************9977777766666666668899*************999.7************ PP

                      EEEEEE CS
  Methyltransf_11  89 kpgGll 94 
                      +pgG +
       KIR65851.1 134 RPGGGV 139
                      ****66 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   2.9e-13   4.4e-10       2     111 ..      35     143 ..      34     184 .. 0.78

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 2.9e-13
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklled....ekfDlilsnevlnaladpd 91 
                      d+g rv+DlGCGtG+lt+ la ++g    v+G+D +++++ lAr  a + g++n+    g   +l++l  +     ++  ++  +v  ++ d d
       KIR65851.1  35 DSGDRVVDLGCGTGQLTLPLAARVGA---VIGVDPEPDMLALARRAALDAGVTNAGWLLGADGDLPTL-GRllgeGTVGALTV-AVAIHFMDRD 123
                      7899*****************99987...*************************99999877777764.43334344444333.5668888888 PP

  Methyltransf_31  92 kileeiervlkpggillied 111
                        ++++  +l+pgg +++ +
       KIR65851.1 124 TLFRSARPLLRPGGGVAVIT 143
                      88888888888888887765 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.8e-12   2.7e-09      46     153 ..      35     143 ..      25     151 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.8e-12
                      --TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TT.....S-T-EEEEEEES-GGG-S-HHH CS
  Ubie_methyltran  46 krgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpf.....eddsfDvvtvsfGlrnvtDklk 134
                       +g +v+D+ +Gtg l++ l+  vg    v+++D +++mL  +++ + + g++n  +l +   +Lp       +++   +tv+  +  + D+++
       KIR65851.1  35 DSGDRVVDLGCGTGQLTLPLAARVG---AVIGVDPEPDMLALARRAALDAGVTNAGWLLGADGDLPTlgrllGEGTVGALTVAVAIH-FMDRDT 124
                      57899***************98875...79***********************************9733332579*********996.89**** PP

                      HHHHHHHHEEEEEEEEEEE CS
  Ubie_methyltran 135 aLkeayrvlkpGGrlvvle 153
                       +++a+  l+pGG + v+ 
       KIR65851.1 125 LFRSARPLLRPGGGVAVIT 143
                      ***************9986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   2.2e-09   3.3e-06       1      62 [.      13      84 ..      13     167 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2.2e-09
  Methyltransf_23  1 ydaqreeelsdklerllpk..lraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae........k 62
                     y+++r+ ++ + l+ +++   l++g rv+d+GcGtG l+  l++++  v+gvD+ p + ++a+        +
       KIR65851.1 13 YARHRRGYPPEVLDAVAGAfgLDSGDRVVDLGCGTGQLTLPLAARVGAVIGVDPEPDMLALARraaldagvT 84
                     67777755555555555444499**********************99***********99997444444440 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.2e-09   1.8e-06       1      98 [.      41     138 ..      41     139 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.2e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg....ssfDlvvasnvlhhlkdirevldnir 90 
                      +++GcGtG+l+ +l+++     ++gvD+ p++++ a++   + +  n+ ++   + dl  l  +    +++ + +++ ++h + d++ +++++r
       KIR65851.1  41 VDLGCGTGQLTLPLAAR--VGAVIGVDPEPDMLALARRAALDAGVTNAGWLLGADGDLPTLG-RllgeGTVGALTVAVAIHFM-DRDTLFRSAR 130
                      59***************..9*************88888888888888888877777776554.25888899988888888887.9********* PP

  Methyltransf_12  91 klLkpgGr 98 
                       lL+pgG 
       KIR65851.1 131 PLLRPGGG 138
                      ******95 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.8e-06    0.0027      32      77 ..      37      80 ..      26      90 .. 0.83
   2 ?    1.8   0.0       0.1   1.5e+02     119     140 ..     123     144 ..     114     162 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.8e-06
                CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHH CS
         MTS 32 sgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenlea 77
                 ++v+DlGcG+G l++ la++     v  vd +   l++a++ + +
  KIR65851.1 37 GDRVVDLGCGTGQLTLPLAARVGA--VIGVDPEPDMLALARRAALD 80
                678*****************9998..78888888888888877655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
                 HHHHHHHHHHEEEEEEEEEEEE CS
         MTS 119 eeliaeAkeaLkegGeLliVan 140
                 ++l+++A+  L++gG   +++n
  KIR65851.1 123 DTLFRSARPLLRPGGGVAVITN 144
                 5799*************99998 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.4e-06    0.0065      69     118 ..      32      78 ..      20      96 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.4e-06
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHH CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnl 118
                   l+ g+rv+++G+G+G lt  la  vg    v++++  +++ + a+r  
  KIR65851.1  32 FGLDSGDRVVDLGCGTGQLTLPLAARVG---AVIGVDPEPDMLALARRAA 78 
                 569*****************99998765...577***9999999988865 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   1.7e-05     0.025      15      57 ..      31      69 ..      25      93 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.7e-05
                HHT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS CS
        FtsJ 15 kfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm 57
                +f+ ++ g++vvDlg+++G+ +  l+ r+ga   v++vD  p 
  KIR65851.1 31 AFG-LDSGDRVVDLGCGTGQLTLPLAARVGA---VIGVDPEPD 69
                577.789*********************975...*****9876 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     4e-05      0.06      52      91 ..      26      64 ..      23      85 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4e-05
                HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEE CS
        CMAS 52 dlileklelkpGmtlLdiGcGWGslvrraverydvkvvgl 91
                d + +  +l+ G++++d+GcG G+l+   ++r ++ v+g+
  KIR65851.1 26 DAVAGAFGLDSGDRVVDLGCGTGQLTLPLAARVGA-VIGV 64
                56667789******************999999664.5665 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.8e-05       0.1      27      72 ..      38      79 ..      24      87 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.8e-05
  Methyltransf_32 27 ltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekrae 72
                      +vvD+G+G g L+  la    +    v+g+d + ++ + a++ a 
       KIR65851.1 38 DRVVDLGCGTGQLTLPLAA---R-VGAVIGVDPEPDMLALARRAAL 79
                     68*****************...4.78999**999988877777665 PP

>> DOT1  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.17      29      71 ..      23      63 ..      20      79 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEE CS
        DOT1 29 eflsevldkvnlkkedvFvDLGSGvGnvvlqaalevgcklsvG 71
                e+l  v     l++ d  vDLG G G+++l  a+ vg    +G
  KIR65851.1 23 EVLDAVAGAFGLDSGDRVVDLGCGTGQLTLPLAARVGAV--IG 63
                667778888899*******************99998865..55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1672.94
//
Query:       KIR65852.1  [L=484]
Description: alpha-L-arabinofuranosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.2e-155  515.3   9.2   9.1e-155  514.7   9.2    1.2  1  ArabFuran-catal  Alpha-L-arabinofuranosidase B, catalytic
    6.1e-34  116.4  11.2    6.1e-34  116.4  11.2    1.9  2  CBM_2            Cellulose binding domain


Domain annotation for each model (and alignments):
>> ArabFuran-catal  Alpha-L-arabinofuranosidase B, catalytic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  514.7   9.2    1e-158  9.1e-155       1     316 [.     170     483 ..     170     484 .] 0.99

  Alignments for each domain:
  == domain 1  score: 514.7 bits;  conditional E-value: 1e-158
  ArabFuran-catal   1 PCDiyaaagtPCvaAhsttRaLyasykGpLyqvqRasdnattdiavlsaggvanaaaqdsFCagttCvitiiYDqsgkgndltqapadgaesgt 94 
                      PCDiyaa+ tPCvaAhsttRaLy +y+GpLyqv+R sdn+t+di++l+ ggvanaaaqdsFCagttC+itiiYDqsg+gn+ltqap++g+ sg+
       KIR65852.1 170 PCDIYAAGSTPCVAAHSTTRALYGAYNGPLYQVRRGSDNTTRDIGPLAPGGVANAAAQDSFCAGTTCLITIIYDQSGRGNKLTQAPPGGF-SGP 262
                      9**************************************************************************************665.*** PP

  ArabFuran-catal  95 aansadklakataapvtlggskaygvlisagtgyrndktkgvatgdeaegiYavldgthyndgCCfdYGnaetsnkddgngemeaiyfgnaavf 188
                      a++++d+la+at ap t+gg+kaygv++++gtgyrn++t+g+a gd++eg+Ya+ldgthyn+gCCfdYGnaet+++d+gng+meaiyfgn++v+
       KIR65852.1 263 APGGYDNLADATLAPTTVGGHKAYGVYVAPGTGYRNNSTNGIAKGDQPEGMYAILDGTHYNGGCCFDYGNAETNSRDNGNGTMEAIYFGNNKVW 356
                      ********************************************************************************************** PP

  ArabFuran-catal 189 gkgdgsgPWveaDlEnglfsggnkkakneenksieskfvtallkgsesnkfaikggdaqsgeLttlydgarpe.egYnpmkkegaiiLgeGGDn 281
                      g+g+g+gPW++aDlEnglfsg n+k  n++++si+++++ta++kg e+n++ai+gg+aqsg+L+t+y+g+rp+  gYnpmkkegaiiLg+GGDn
       KIR65852.1 357 GYGAGNGPWIMADLENGLFSGVNQKY-NANDPSISHRYLTAIVKG-EPNHWAIRGGNAQSGGLSTFYNGVRPNvPGYNPMKKEGAIILGIGGDN 448
                      ************************96.89****************.55*************************99******************* PP

  ArabFuran-catal 282 snaaqgtFyEGavvagapsdatdnavqanivaagY 316
                      s++a+gtFyEG++++g+psdat+navqani+aagY
       KIR65852.1 449 SHGARGTFYEGVMTSGYPSDATENAVQANITAAGY 483
                      **********************************9 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4  11.2   6.8e-38   6.1e-34       1     101 []      40     139 ..      40     139 .. 0.98
   2 ?   -3.5   0.0       1.5   1.3e+04      69      88 ..     406     425 ..     392     429 .. 0.74

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 6.8e-38
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTE CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGa 99 
                 ++++yav s+W +Gf a+vt++N g+++ ++W+++w++ agq+vtqlWn++++qsG +vt+tnvs+Ng+i++Gg++sfGf+g+ +gsn+ p+sf++nG+
  KIR65852.1  40 CQVSYAVSSQWPGGFGANVTITNLGDPV-SNWRLTWDFGAGQTVTQLWNGSYTQSGAQVTVTNVSYNGSIPTGGTTSFGFNGTANGSNPVPASFALNGT 137
                 89***********************987.67******************************************************************** PP

                 E- CS
       CBM_2 100 aC 101
                 +C
  KIR65852.1 138 TC 139
                 *9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.5
                 EE-TTEEEEEEEEEEE-SS- CS
       CBM_2  69 tiapGgsasfGfqgsktgsn 88 
                  i  G+++s G+ + ++g +
  KIR65852.1 406 AIRGGNAQSGGLSTFYNGVR 425
                 46677888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3259.97
//
Query:       KIR65853.1  [L=640]
Description: alpha-L-fucosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-87  293.3   6.2    3.8e-87  293.0   6.2    1.1  1  Alpha_L_fucos  Alpha-L-fucosidase
    3.3e-26   91.5  15.3    1.4e-25   89.5  15.3    2.2  1  CBM_2          Cellulose binding domain
      3e-07   30.9   0.0      1e-06   29.2   0.0    1.9  2  Fucosidase_C   Alpha-L-fucosidase C-terminal domain


Domain annotation for each model (and alignments):
>> Alpha_L_fucos  Alpha-L-fucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.0   6.2   6.3e-91   3.8e-87       9     350 .]      38     392 ..      31     392 .. 0.85

  Alignments for each domain:
  == domain 1  score: 293.0 bits;  conditional E-value: 6.3e-91
                    ----SSS-SSSSS--.SHHHHHHHHH-EEEEE--SGGGTTT..T-GGGHHHHTT--HH.................HHHGGG..............G CS
  Alpha_L_fucos   9 qaeekyeptwesldk.rklpewFrdaKfGifiHWGlysvpaageaseWyarnmkeekekkvvkfhkkkYg..eefeYkdla..............k 87 
                    +  ++y+ptw+s+d+  +++ewF+d KfGi+ HWG+++vpa+g  +eWy rnm+++ +   +++hk+ Yg  + + Y++++              +
     KIR65853.1  38 AGPQSYTPTWASVDQhPPAAEWFQDGKFGIYYHWGAFAVPAFG--NEWYPRNMYNNGS-YENNHHKSVYGdpSAWPYHNFIngardkagnwvqfaP 130
                    55789**********66788*********************66..***********87.9999********999*****66666666666644448 PP

                    G---TT..--HHHHHHHHHHHT-SEEEEEEE-TT--BSS--TT-S-BGGG.ST-S-HHHHHHHHHHHTT-EEEEEEESS-TT-TT--SS--SHHHH CS
  Alpha_L_fucos  88 eFkaek..FdpeewaklfkaaGakYvvltakHHdgfalwdskvsdwnsvdagPkrDivkelakavrkeglkfglyysladwknpdyyedkkkeedr 181
                    ++k++   +dp+ewa+lf +aGak++ ++a+HHdg+++w+s+v++wnsv +gPk D+++  a+a+r++glk+ ++ ++  w+   yy+   +++++
     KIR65853.1 131 KLKSAGgnWDPNEWAQLFVDAGAKFAGPVAEHHDGYSMWNSRVNEWNSVATGPKLDLLRLHADAIRAKGLKLFVSLHHQ-WNFGGYYQYVPQQSST 225
                    88777678********************************************************************995.8777777765555543 PP

                    HHHH..........HHHHHHHHHHHHHHHHSTTEEEEEES--SHH..........HHTTHHHHHHH..HHHHHHHSTT..-EEBGGG-B-TTSSBB CS
  Alpha_L_fucos 182 ktekkek....kskkykektlnqlkelvtkYkpdilwfDgewekke.........eyynedwkseeelaklykelspgdevlvndrlgkkeaedyq 264
                    + +k       ++++ ++ ++++l+e+++ Y+pd++w D  + +           +yyn+++++++ ++ +yk+             g +++ ++ 
     KIR65853.1 226 TLRK--LygqlDNATEQQLWTDKLREVIDGYQPDLIWQDLYLGRIDearrldflaYYYNKAVAWNKDVVVTYKD-------------GFNNRGEVY 306
                    3332..13566666669**********************99999545555666655556666666655555555.............444455556 PP

                    EEBSS---T-GGG-EEEEE-SB.S--S--S-GS-B--HHHHHHHHHHHHHTTEEEEEEE---TTSS--HHHHHHHHHHHHHHHHHGG CS
  Alpha_L_fucos 265 tperglpkelkakpWetcttig.ksWgYkrneeeyksakeliklLvdivskgGnlLLnigptadGsipeeeeerLkeiGkWlkvnge 350
                     +erg p+ +++ +W t+++++ +sW+Y+++   y+s++ +++ L+d vsk+G ++Ln++ptadG+ip  ++++L+ iG++lk+ ge
     KIR65853.1 307 DFERGGPAGIQTPYWLTDDSVSsSSWCYTQG-IGYYSTTAMLHALIDRVSKNGTMVLNVAPTADGVIPSGQQTILRGIGDHLKRFGE 392
                    6*********************9********.****************************************************998 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5  15.3   2.4e-29   1.4e-25       1      96 [.     543     637 ..     543     640 .] 0.95

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 2.4e-29
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EE CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftv 96 
                 a+a+y+vt++W++Gf+a vtv+  g ++ingW+v+w++p+gq + q Wn++++qsG++vt++nv +Ng +a+G+s++fGf+++++g+n+ p+s+t 
  KIR65853.1 543 ATAKYTVTNSWSGGFQADVTVT-AGAAPINGWKVSWSFPNGQVINQIWNGSHTQSGSNVTVSNVAYNGALAAGASTTFGFTATWNGTNNPPASITC 637
                 589******************9.6999*************************************************************99998876 PP

>> Fucosidase_C  Alpha-L-fucosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.6   9.8e+03      14      33 ..      97     115 ..      90     117 .. 0.79
   2 !   29.2   0.0   1.7e-10     1e-06       6      90 .]     423     511 ..     420     511 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
  Fucosidase_C  14 kkkekavYaivlewPkdnel 33 
                   + ++k+vY     wP++n +
    KIR65853.1  97 N-HHKSVYGDPSAWPYHNFI 115
                   3.77899999999**99866 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 1.7e-10
  Fucosidase_C   6 tpnvwYTskkkekavYaivlewPkdn.elelgslvktskssstqvtllGl..geklkwks..sk.kglkielpqlkidklplkwawtlklt 90 
                   ++++ +T++k+++ +Ya+v+ wP ++ +++ ++  + + ++ t v+llG+  g+ ++     ++  gl+i++p  ++++     a+++klt
    KIR65853.1 423 NKDIRFTRNKNNTVLYATVMGWPGSTlTITTMTSSRVNLANLTGVQLLGStaGTYINLPRptQDgGGLHITMP--SASAPYSALAYVVKLT 511
                   789******9999**********99865555555444455689******86557787766764459*******..4555555789999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4283.88
//
Query:       KIR65854.1  [L=459]
Description: sulfurtransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-21   74.5   0.0    5.9e-12   46.1   0.0    2.8  3  Rhodanese      Rhodanese-like domain
    5.8e-09   36.2   6.3    8.4e-08   32.4   6.3    2.6  1  Lactamase_B    Metallo-beta-lactamase superfamily
  ------ inclusion threshold ------
      0.015   14.8   0.5       0.21   11.1   0.2    2.7  2  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         2   1.2e+04      26      36 ..     108     119 ..      80     130 .. 0.62
   2 !   25.4   0.0   2.6e-09   1.5e-05       2      60 ..     261     309 ..     260     343 .. 0.69
   3 !   46.1   0.0   9.8e-16   5.9e-12       1     106 [.     363     454 ..     363     455 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2
   Rhodanese  26 ek.ghIpgAvnv 36 
                 e+ gh p++++v
  KIR65854.1 108 ETpGHTPESISV 119
                 455899999988 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 2.6e-09
   Rhodanese   2 akelkellekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeelle 60 
                 a+e++  +++g+v ++D+R+p+e+++gh+ gA+n+         + +++++e+  ++ +
  KIR65854.1 261 AAEFAGARADGAV-VVDARDPQEFAAGHVAGAINI---------PADGRFAETAGSVVA 309
                 6677777777775.*********************.........555555555555444 PP

  == domain 3  score: 46.1 bits;  conditional E-value: 9.8e-16
   Rhodanese   1 sakelkellekgkva.llDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvld 98 
                 +a+el++ l++ ++  +lDvR+  e e+g I g++++             pl+el  +l e     +++vvv+c+gg r++ aa ll+++G  +vs l 
  KIR65854.1 363 TATELRAALDRAEPPvVLDVRNIGEREQGAIAGSLHI-------------PLAELTRRLDEV--PADRPVVVHCAGGYRSSVAASLLRSAGRRDVSDLL 446
                 6899999997776667*********************.............9*9999999998..***************888899******655***** PP

   Rhodanese  99 GGfkawke 106
                 GG+ aw +
  KIR65854.1 447 GGYGAWRA 454
                 ******87 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   6.3   1.4e-11   8.4e-08       3     197 .]      10     185 ..       8     185 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.4e-11
                  CCSSEEEEEE..ETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHT CS
  Lactamase_B   3 pdpvnsylie..gdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglll 98 
                  ++++ syl+     g+++L+D+  +  + +a     +++  ++ ++ vi+TH+H+D  +g  +++ at++ +g+ + ++ +++ + +           
   KIR65854.1  10 CLSQASYLVAdeRTGRAVLVDPRRDIGEYLA-----DARAHGLTIEGVINTHFHADFLAGHLEVAAATGAWIGYGRRAETEYPIRKL----------- 91 
                  56778999998888*******9988888887.....59*******************************999999888888877777........... PP

                  TCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEE......EETTCCEEEECTTTSSHHCCCCCC....TTCEEE-SHCHHHHHHHHHHHHHH CS
  Lactamase_B  99 agvsadkpdvdeeeldgnaggrralyvtggpghghghgvv......eygggkvlftGDallagetgridl...tlrgaevrdpsdaekyldsllklag 187
                               +++ + +g+++l+++ +pgh++ +++v       ++    ++tGDal++g+ gr dl       + +    +a+ y +  +kl g
   KIR65854.1  92 ------------ADGERISLGDVTLEIMETPGHTPESISVlvyehaADPVPHGVLTGDALFIGDVGRPDLlasL---GVTAEELGAMLYDSVQRKLMG 174
                  ............45566666666666666666666555552222225777899*****************6653...444444444444444477779 PP

                  HCHSEEEE.SS CS
  Lactamase_B 188 lkaevlvp.gH 197
                  l++ev+v+ +H
   KIR65854.1 175 LPDEVRVFpAH 185
                  99999888788 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   3.5e-05      0.21       3     116 ..      27     115 ..      25     166 .. 0.67
   2 ?   -0.8   0.0      0.16   9.3e+02     161     200 ..     379     420 ..     361     421 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.5e-05
                    EEES--TTHHHH..HTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-TTSEE CS
  Lactamase_B_2   3 iLiDagpdlrqq..alralqPvelrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleeepavnvheldwgesf 96 
                    +L+D+  d+ +    +ra        +   i++V+ th H+D lag l +++                   a++ y  + e  + ++++l+ ge++
     KIR65854.1  27 VLVDPRRDIGEYlaDARA--------HGLTIEGVINTHFHADFLAGHLEVAA----------------ATGAWIGYGRRAET-EYPIRKLADGERI 97 
                    788888885544211233........33479999999999999987555555................55566666666666.7788888888888 PP

                    EECSTTEEEEEEEE-EE--C CS
  Lactamase_B_2  97 elgdggleitatparhksgr 116
                    +lgd  +++++++ ++ +++
     KIR65854.1  98 SLGD--VTLEIMETPGHTPE 115
                    8885..55666666666665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.16
                    EEE-S-SSTTHHHH..HHT---STSHHHHCTTSSSSEEEEES CS
  Lactamase_B_2 161 llditayeddemir..hmgHltpeeaveaaadlgakrlvliH 200
                    +ld+    ++e  +  +  H+++ e  + ++++ a r v++H
     KIR65854.1 379 VLDVRNIGEREQGAiaGSLHIPLAELTRRLDEVPADRPVVVH 420
                    4555555566655577899******************99999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3420.50
//
Query:       KIR65855.1  [L=469]
Description: beta-lactamase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-11   44.6   0.0    7.2e-08   32.9   0.0    2.4  2  Rhodanese    Rhodanese-like domain
    1.2e-05   25.5   9.8    3.4e-05   23.9   9.8    1.8  1  Lactamase_B  Metallo-beta-lactamase superfamily
  ------ inclusion threshold ------
      0.081   13.4   3.0        7.2    7.1   0.1    3.5  3  DUF4350      Domain of unknown function (DUF4350)


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00028       1.7       2      36 ..     259     292 ..     258     322 .. 0.88
   2 !   32.9   0.0   1.2e-11   7.2e-08      15      98 ..     383     449 ..     375     454 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00028
   Rhodanese   2 akelkellekgkvallDvRppeeYekghIpgAvnv 36 
                 a+el+++l++g++ ++D R + +Y+++h+ g v +
  KIR65855.1 259 AAELRDRLAAGQW-VVDLRHRKAYAASHLAGTVAL 292
                 7899999988876.***************998877 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 1.2e-11
   Rhodanese  15 allDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvld 98 
                 ++lDvR  +e+ +gh+ gAv++             pl +lp +l++    +  tv v+c +g ra+aaa ll  +G  +v v+d
  KIR65855.1 383 VVLDVRMTNEWTAGHLDGAVHI-------------PLPDLPNRLADV---PAGTVWVHCGSGYRATAAASLLANAG-REVVVID 449
                 29********************.............***********9...**************9999999999**.9998887 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   9.8   5.7e-09   3.4e-05       9     183 ..      18     173 ..      16     185 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 5.7e-09
                  EEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTCHCGCCE CS
  Lactamase_B   9 yliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllagvsadkp 106
                  yl  ++  ++++D+  + ++ + +     +g k+ ++++v+ THlH D ++g  +l++ t++   + a+++  + ++ +                   
   KIR65855.1  18 YLASDGRVAVVVDPQRDVDRILYL-----AGTKGTRITHVVETHLHNDYVSGGLELARLTGARYLVAAADDVRFDRDPV------------------- 91 
                  666677778899999999988876.....9*************************************************................... PP

                  EEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCC.....EEEECTTTSSHHCCCCCC..TTCEEE-SHCHHHHHHHHHH CS
  Lactamase_B 107 dvdeeeldgnaggrralyvtggpghghghgvveygggk.....vlftGDallagetgridl.tlrgaevrdpsdaekyldsll 183
                   vd +  ++ +  r++ ++t+g++ +h+++v++   ++      +ftG  ll g tgr+dl   r a+++ + +++++++ ++
   KIR65855.1  92 -VDGDTVAISDTLRLRAVATPGHTFHHLSYVLDEAAAGrwqpvGVFTGGSLLFGTTGRTDLlGRRHAHDLAHRQHASARRLAD 173
                  .*******************************997765333336999999999999999997777788888888888776655 PP

>> DUF4350  Domain of unknown function (DUF4350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.011        68      19      60 ..       5      43 ..       2      49 .. 0.79
   2 ?   -0.3   0.0      0.25   1.5e+03      47      65 ..     251     272 ..     246     275 .. 0.77
   3 ?    7.1   0.1    0.0012       7.2       9      36 ..     433     461 ..     427     463 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.011
     DUF4350 19 vevrrvrkpfd..alegedgtllvvapdlrlteeelaallewva 60
                v+v ++ ++ d   l++ +++ +vv+p+     ++++++l+++ 
  KIR65855.1  5 VSVVATSSLGDrsYLASDGRVAVVVDPQ-----RDVDRILYLAG 43
                67777777777778899999********.....67899999987 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.25
     DUF4350  47 lte...eelaallewvarGntl 65 
                 lt+   +++a+l++++a+G  +
  KIR65855.1 251 LTPvarADAAELRDRLAAGQWV 272
                 666666999********99655 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0012
     DUF4350   9 alaelLeaqGvevrrvrkpfdal.egedg 36 
                 a+a+lL ++G ev ++++ f++  +++ g
  KIR65855.1 433 AAASLLANAGREVVVIDDRFEQAgTRPTG 461
                 8999****************976355554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2920.54
//
Query:       KIR65856.1  [L=201]
Description: sulfurtransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-17   62.4   0.0    6.7e-17   61.9   0.0    1.2  1  Rhodanese  Rhodanese-like domain
      5e-11   42.5   3.8    1.1e-10   41.4   3.8    1.4  1  DUF2892    Protein of unknown function (DUF2892)


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   7.5e-21   6.7e-17       5     107 .]      17     107 ..      13     107 .. 0.89

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 7.5e-21
   Rhodanese   5 lkellekgkva.llDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvldGGfk 102
                 l+el+++g++  llDvR+p+e+e+ hIpgA nv          + + l e  eel+++    ++ vv++c++g ra++a ++l   G++ ++vldGG+ 
  KIR65856.1  17 LRELIDSGRAPrLLDVRTPAEFETAHIPGAYNV----------PLDLLREHREELRNH---LDEDVVLICRSGARATQAGQTLAGVGLPHLKVLDGGML 102
                 778887777557*********************..........888888888888887...9*************9999888888**999********* PP

   Rhodanese 103 awkea 107
                 aw++a
  KIR65856.1 103 AWQAA 107
                 **985 PP

>> DUF2892  Protein of unknown function (DUF2892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   3.8   1.2e-14   1.1e-10       8      59 ..     120     172 ..     119     181 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1.2e-14
     DUF2892   8 ldRilrivvGlvllllallglsggw..gwllglvGavllltgltgfCplyallg 59 
                 l+R++r+v+G+++l+++l ++   +  +w+++++Ga+l++++lt++C + +llg
  KIR65856.1 120 LERQVRLVAGSIVLVAVLGSVLV-PglKWVAAAIGAGLTFAALTNTCAMGMLLG 172
                 8***************9999954.359**************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1381.48
//
Query:       KIR65857.1  [L=297]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-54  184.8  48.6    1.9e-54  184.8  48.6    1.8  2  TauE      Sulfite exporter TauE/SafE
  ------ inclusion threshold ------
       0.76   10.0   0.1       0.76   10.0   0.1    3.4  4  DUF3784   Domain of unknown function (DUF3784)


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.8  48.6   2.1e-58   1.9e-54       3     235 ..      10     244 ..       7     245 .. 0.93
   2 ?   -0.2   0.3     0.069   6.2e+02     190     209 ..     259     278 ..     246     288 .. 0.56

  Alignments for each domain:
  == domain 1  score: 184.8 bits;  conditional E-value: 2.1e-58
        TauE   3 lagllaGfvagllGiGggliavPlLll.l.lppavavatsllavvatslsgalahrrrgnvdwrlllllllgsliGallGallllllpsellkllfgvl 99 
                 ++++l+G+  gllG+Gg+++avPlL++ + lp+++a+atsll+v+ats++g+l h r ++v+wr++l+++l+++ Ga++G+ l++++p+++l++ f+++
  KIR65857.1  10 GLAVLIGVSLGLLGGGGSILAVPLLVYvAdLPAKEAIATSLLVVGATSAVGVLPHARAHRVRWRTGLVFGLAGMTGAYAGGRLAAYVPAAVLLTGFALM 108
                 6899***********************5599***************************99*************************************** PP

        TauE 100 llllallmllrkkrsrak.grerrptaillvligglvGllsGllGiGgGfllvpllllllglplkkavatslllilvislagalgyalagavdwpllll 197
                 +l++a+ m++ ++  +++ +++++   + ++l g++vGl++Gl+G+GgGfl+vp+l ll glp+ +av+tsl++i++ s+ag++gy+++ ++dw l+++
  KIR65857.1 109 MLATAVAMIRGRRD-TGDrPVPHELPVPRVILDGVVVGLVTGLVGAGGGFLVVPALALLGGLPMPVAVGTSLVVIAMKSFAGLAGYLSTVSIDWGLAAA 206
                 *********97774.444255566666656666777*************************************************************** PP

        TauE 198 llpgallGallGarlarrlsertlrrlfallllvlgvk 235
                 ++++a++G+l G rla r++e++lrr+f+++++v+gv 
  KIR65857.1 207 VTAAAVVGSLAGGRLAGRVPEAVLRRAFGWFVVVMGVF 244
                 ************************************96 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.069
        TauE 190 vdwpllllllpgallGallG 209
                 v w +l++++++a+  +  G
  KIR65857.1 259 VLWIVLGVAVAAAVTATAAG 278
                 33333333444444333333 PP

>> DUF3784  Domain of unknown function (DUF3784)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2      0.52   4.6e+03      47      55 ..      16      30 ..       5      62 .. 0.47
   2 ?    0.0   0.2      0.11     1e+03      60      88 ..      81     117 ..      70     121 .. 0.54
   3 ?   -0.2   0.6      0.13   1.1e+03      45      80 ..     174     211 ..     169     218 .. 0.64
   4 ?   10.0   0.1   8.5e-05      0.76      41      85 ..     229     273 ..     224     279 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.52
     DUF3784 47 givlllig......i 55
                g+ l l+g      +
  KIR65857.1 16 GVSLGLLGgggsilA 30
                344433333322222 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.11
     DUF3784  60 lgll........saiesealliialiviiiiviyliv 88 
                 +g+         +a+  +a+l+ +++++++++ ++++
  KIR65857.1  81 AGMTgayaggrlAAYVPAAVLLTGFALMMLATAVAMI 117
                 4444443333345555666666666666666665555 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.13
     DUF3784  45 fmgivlllig..ilflllgllsaiesealliialivii 80 
                 ++g  l++i+   +  l+g+ls +  ++ l++a+ +  
  KIR65857.1 174 AVGTSLVVIAmkSFAGLAGYLSTVSIDWGLAAAVTAAA 211
                 56666666665577788888877777777776555333 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 8.5e-05
     DUF3784  41 klsrfmgivllligilflllgll.saiesealliialiviiiiviy 85 
                  l r+ g++ +++g +f+l+  l +++ ++ +l+i+l v +++++ 
  KIR65857.1 229 VLRRAFGWFVVVMG-VFVLAQQLpDGLRTNPVLWIVLGVAVAAAVT 273
                 6899**********.5555555559**********99998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2236.72
//
Query:       KIR65858.1  [L=552]
Description: chemotaxis protein CheY [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-32  110.8   0.5    3.7e-31  108.5   0.5    2.0  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.8e-15   57.0   0.2    2.1e-10   40.4   0.0    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    9.3e-12   45.1   0.0    1.7e-11   44.2   0.0    1.4  1  Response_reg   Response regulator receiver domain
    4.6e-08   33.5   0.8    0.00036   21.0   0.0    2.8  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    1.3e-07   31.5  11.4    0.00019   21.2  11.4    3.0  1  DAO            FAD dependent oxidoreductase
    1.8e-07   30.8   4.9    6.4e-07   29.1   1.7    2.2  2  FAD_oxidored   FAD dependent oxidoreductase
    2.7e-05   23.1   0.6     0.0041   15.9   1.1    2.2  2  HI0933_like    HI0933-like protein
    2.7e-05   23.6   3.5    0.00028   20.3   0.9    2.4  2  FAD_binding_3  FAD binding domain
    4.7e-05   22.7   3.3    0.00037   19.8   0.5    2.5  2  Thi4           Thi4 family
    0.00019   20.6   2.5     0.0035   16.5   1.0    2.6  3  GIDA           Glucose inhibited division protein A
    0.00052   20.2   5.6     0.0036   17.5   1.3    2.7  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0007   18.8   4.0     0.0007   18.8   4.0    2.8  3  FAD_binding_2  FAD binding domain
     0.0079   16.2   5.7      0.022   14.7   0.1    3.0  3  NAD_binding_9  FAD-NAD(P)-binding
  ------ inclusion threshold ------
       0.02   14.1   0.1        5.2    6.1   0.0    2.7  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
      0.064   12.3   2.9       0.42    9.6   1.0    2.3  2  Lycopene_cycl  Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.5   3.1e-34   3.7e-31       1     294 []     227     538 ..     227     538 .. 0.87

  Alignments for each domain:
  == domain 1  score: 108.5 bits;  conditional E-value: 3.1e-34
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.........HHHHCHHHHCCCCHCCTCEEEEESC.EEEEET CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias.........evvkklnqgielllgeevvkidpgk.kkvkle 88 
                  +d+vv+GgGpAGl aa + a  g++++lv  e+   +g+   s+ ++++ ++++ +s         +  + l+ g ell ++evv++ ++  +++   
   KIR65858.1 227 YDLVVVGGGPAGLGAAVYGASEGLRTVLV--ERRATGGQAGQSSRIENYLGFPDGVSgaqltdrarR--QALKFGAELLSTREVVGLAEAGsARLLR- 319
                  689**************************..777899**********************99999543..57888899999999****7555233333. PP

                  EEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  89 kkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkels 186
                      +d+ +ia++++vlAtG s r l+ pG+ae +g++   + sa       +++++ +vGg + +   A ++++++++v+++ ++  l      ++s
   KIR65858.1 320 ---FDDGSTIAAHAVVLATGVSYRMLDAPGLAELTGRG-VFYGSAATEAPSCVDQDVYIVGGANSAGQAAVYFSRYAARVHVLIRGADLT----ASMS 409
                  ...48899****************************99.6666666666777778**********************************9....7888 PP

                  HHHHHHHHHT.TEEEEESCEEEEEEETTE....EEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTS.............. CS
                  xxxxxxxxxx.xxxxxxxxxxxxxxxxxx....xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............. RF
  Pyr_redox_2 187 aaleealeke.Gvevklgtsvkeidgnge....kle.vvledgeeidadlvvvavGvrpstelleeklglelderggivvdefl.............. 264
                   +l ++l +   ++v+ +t+v++  g+++     l+ + +++ + +da+ ++v +G +p+te l e   +  derg++v+ + l              
   KIR65858.1 410 SYLIDQLDRIdRITVHPHTEVVAGAGEEHlqrlTLRdTRTGERRDVDASWLFVFIGAEPRTEWL-EG-VVVRDERGYVVTGPDLvaggsrppgwslpr 505
                  888888888769*********999999997744333666677777******************9.54.44569**********999999999999999 PP

                  .....BESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 265 .....rtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                       +++ pg++a+GDv     +++++  Av +G
   KIR65858.1 506 dpyhlESSLPGVFAAGDVR--AASVKRVASAVGEG 538
                  9998889************..89999999998887 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   1.2   2.5e-05      0.03       1      33 [.     230     261 ..     230     267 .. 0.87
   2 !   40.4   0.0   1.7e-13   2.1e-10     120     288 ..     322     486 ..     278     491 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.5e-05
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgnig 33 
                  +++G+GPaGl+aa+     gl + + +E+ + g
   KIR65858.1 230 VVVGGGPAGLGAAVYGASEGL-RTVLVERRATG 261
                  79*******************.57899987654 PP

  == domain 2  score: 40.4 bits;  conditional E-value: 1.7e-13
  Pyr_redox_3 120 ke.tyeAkkviiAtGe....fdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkp 212
                   + t+ A+ v++AtG      d P + +  G    v   s  +e+    +q+v ++Gg nSa  aA+ + r+ a+V+v++rg+          +s++ 
   KIR65858.1 322 DGsTIAAHAVVLATGVsyrmLDAPGLAELTGRG--VFYGSAATEAPSCVDQDVYIVGGANSAGQAAVYFSRYAARVHVLIRGAD-------LTASMSS 410
                  44399**********732224667777777776..33444445666889*********************************85.......5556677 PP

  Pyr_redox_3 213 dienrleelvkeekikvlfnaevkeikekeeeykvk...tedgkkvevkddvvla.tGykpdlsflkkslfeldedgrpv 288
                  +  ++l+++    +i+v+ ++ev +   +e+  +++   t++g++ +v+   +++ +G +p ++ l+  ++ +de g++v
   KIR65858.1 411 YLIDQLDRID---RITVHPHTEVVAGAGEEHLQRLTlrdTRTGERRDVDASWLFVfIGAEPRTEWLE-GVVVRDERGYVV 486
                  7777777763...47788777777666555544444224566666667777777779****999999.777777888766 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   1.5e-14   1.7e-11       1     105 [.       6     118 ..       6     123 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 1.5e-14
                   EEEESSSHHHHHHHHHHHH...HTTEEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHH CS
  Response_reg   1 vlivdDdplvrellrqlle...eegyeevaeaedgkealellkeek.....vdlillDinmpgmdGlellkeireedpelpviiltahseeedavea 89 
                   +l +dDdp+v +++++ ++    + y +v  a +g eal+ l+e k     v +++ D +mp+m+G+e+l+   +  p  + ++lta+++   a++a
    KIR65858.1   6 ILSIDDDPAVSRAVARDFRrryGDRY-RVVRAGSGPEALDTLREIKlrgeqVAVLVADYRMPEMNGIEFLEAAMDLFPAARRVLLTAYADTGAAIDA 101
                   799************99997755888.9999***********665555555********************************************** PP

                   H.HCTESEEEESSG-HH CS
  Response_reg  90 l.kagaddflsKpfdpe 105
                   +  ++ d +l Kp++p 
    KIR65858.1 102 InLVDLDHYLLKPWHPP 118
                   *5579********9876 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.4   0.00099       1.2       2      32 ..     229     259 ..     228     273 .. 0.92
   2 !   21.0   0.0     3e-07   0.00036       2      79 ..     372     445 ..     371     448 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00099
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversd 32 
                 +vvvGgG  gl +A + a  g ++ +ver+ 
  KIR65858.1 229 LVVVGGGPAGLGAAVYGASEGLRTVLVERRA 259
                 79***************************96 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 3e-07
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT.TEEEECSEEEEEEEEETTSEEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekn.gievllntkveeiegsedgvesvklk 79 
                 v +vGg +++  +A ++++++++V+v+ r+  l     + +s++l ++l +   i+v+ +t+v++  g+e  +++++l+
  KIR65858.1 372 VYIVGGANSAGQAAVYFSRYAARVHVLIRGADLT----ASMSSYLIDQLDRIdRITVHPHTEVVAGAGEEH-LQRLTLR 445
                 679*******************************....***********7777***********9988886.6777766 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2  11.4   1.6e-07   0.00019       1     226 [.     228     487 ..     228     510 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.6e-07
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHH....HHHHHHHSSTTSEEEEEEEEEES.S CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeel....releeelgididyrrtGllslaa.d 92 
                 d+v++GGG +Gl++A + a +g  ++l+e++   g g+ g +s++       +p++   a+l+ +a++      +el +++++ +++ + G+  l + d
  KIR65858.1 228 DLVVVGGGPAGLGAAVYGASEGlrTVLVERR-ATG-GQAGQSSRIENYLG--FPDGVSGAQLTDRARRQAlkfgAELLSTREV-VGLAEAGSARLLRfD 321
                 89*****************99**********.777.88888888887633..5555544455555532221334888887554.999999999998733 PP

                 HHHHHHHHHHHHHH.HHTTTTEEEEEHHHHHHHSTTST.TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEES....................... CS
         DAO  93 eeelealdkllall.leagldaelldaeevrelepalp.gllgalfypdtgqvdpakltaalaraaealGveileg....................... 166
                     +++ + ++++ l+ g+ +++lda  ++el    +  + g+  +    +vd   ++ + a+ a +++v + ++                       
  KIR65858.1 322 ----DGSTIAAHAVvLATGVSYRMLDAPGLAELTG--RgVFYGSAATEAPSCVDQDVYIVGGANSAGQAAVYFSRYaarvhvlirgadltasmssylid 414
                 ....45556666667889**99*****98999996..31344555555557778888888877777777776666677777777777777777777777 PP

                 .............ECEEEE..EEEETCEEEEE.EECT.EEEEEEEE....EEE--GGGHHHHHTTCTTTSEEEEEEEEEEE CS
         DAO 167 .............tevtgl..eeedgkvwgve.rttp.gendaada....vVnaaGawsdllgllkeldlpispvrgqvlv 226
                              tev++   ee    ++++  r+t+ ge++ +da    v + a + +  l   + +   ++  rg+v++
  KIR65858.1 415 qldridritvhphTEVVAGagEE---HLQRLTlRDTRtGERRDVDAswlfVFIGAEPRTEWL---EGV--VVRDERGYVVT 487
                 77777777777776666541222...345555666666777444667777777777776644...444..56777777776 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   1.7   5.3e-10   6.4e-07       1      37 [.     228     263 ..     228     278 .. 0.90
   2 ?    2.6   0.1     0.057        68       1      73 [.     371     448 ..     371     482 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 5.3e-10
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGl 37 
                   D+vVvGGgpaG+ AA+  a +G +++Lve+r   GG+
    KIR65858.1 228 DLVVVGGGPAGLGAAVYGASEGLRTVLVERRAT-GGQ 263
                   99***************************9864.666 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.057
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdig...nkaee.....qvvtgiareflerlrqrgga 73 
                   Dv +vGG  +   AA+   r  a+v ++ +   l   ++s l   ++        +     +vv g  +e l+rl+ r++ 
    KIR65858.1 371 DVYIVGGANSAGQAAVYFSRYAARVHVLIRGADLTASMSSYLIDQLDRidrI---TvhphtEVVAGAGEEHLQRLTLRDTR 448
                   999**********************999998888888888887777764440...23445689999999999998775444 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.1   3.5e-06    0.0041       2      34 ..     228     260 ..     227     265 .. 0.91
   2 ?    4.4   0.0      0.01        13     102     163 ..     276     336 ..     273     344 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.5e-06
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakk 34 
                  d++v+GgG+AGl aA+  a++g r++l+e+  +
   KIR65858.1 228 DLVVVGGGPAGLGAAVYGASEGLRTVLVERRAT 260
                  89***************************9765 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.01
                  EETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 102 FpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                  Fp+  + +++ d   +++ + g +l   +ev ++++ ++++  ++ +++++++a+++vlAtG
   KIR65858.1 276 FPDGVSGAQLTDRARRQALKFGAELLSTREVVGLAE-AGSARLLRFDDGSTIAAHAVVLATG 336
                  7788888888888889999999999999*****965.4554778889*************98 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.9   2.3e-07   0.00028       3      45 ..     228     270 ..     227     273 .. 0.90
   2 ?    3.0   0.0      0.04        48     109     158 ..     410     460 ..     405     469 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.3e-07
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EE CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradgl 45 
                    d ++VG+GpaGl +a   ++ G r+vlve+r+t  + ++++ +
     KIR65858.1 228 DLVVVGGGPAGLGAAVYGASEGLRTVLVERRATGGQAGQSSRI 270
                    668*****************************99999888765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.04
                    HHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEE CS
  FAD_binding_3 109 riLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYl 158
                     +L++++ +   ++v+ +tev++   +e   + ++rd +tge+++v+a +l
     KIR65858.1 410 SYLIDQLDRIDrITVHPHTEVVAGAGEEHLQRLTLRDTRTGERRDVDASWL 460
                    678888888888999*******999999999*****************997 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.5   3.1e-07   0.00037      19      56 ..     228     263 ..     223     271 .. 0.88
   2 ?    2.6   0.1     0.054        65      15      46 ..     367     399 ..     358     409 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.1e-07
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TT CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvailersvspGGG 56 
                 D+v+vG+G++GL aa y a + +l+++++er+   GG 
  KIR65858.1 228 DLVVVGGGPAGLGAAVYGASE-GLRTVLVERRA-TGGQ 263
                 99******************9.********995.4554 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.054
                 HTEEEEEEE--SHHHHHHHHHHHHC.TTS-EEE CS
        Thi4  15 yaesDvvivGaGssGLtaayylakk.pdlkvai 46 
                  +++Dv ivG+  s   aa y+++    ++v+i
  KIR65858.1 367 CVDQDVYIVGGANSAGQAAVYFSRYaARVHVLI 399
                 6789**999877777777777777635555554 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.0   2.9e-06    0.0035       1      29 [.     228     256 ..     228     275 .. 0.85
   2 ?    2.4   0.0     0.055        65     116     150 ..     304     337 ..     288     353 .. 0.83
   3 ?   -1.9   0.0       1.1   1.3e+03       1      39 [.     371     409 ..     371     417 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.9e-06
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLit 29 
                 d++V+GgG AG+ AA+  a  G++++L+ 
  KIR65858.1 228 DLVVVGGGPAGLGAAVYGASEGLRTVLVE 256
                 689************************93 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.055
                 S-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 116 eeveeliveekkvkgvvtedgetikakavviatGt 150
                 +ev  l  e ++ + ++ +dg+ti a+avv+atG 
  KIR65858.1 304 REVVGL-AEAGSARLLRFDDGSTIAAHAVVLATGV 337
                 556666.556777888899***************6 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.1
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT--S CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithkldtiaels 39 
                 dv ++Gg  +   AA+  +r  a+v  +    d  a++s
  KIR65858.1 371 DVYIVGGANSAGQAAVYFSRYAARVHVLIRGADLTASMS 409
                 789999988888999********9999877777766665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.3     3e-06    0.0036       1      38 [.     231     267 ..     231     308 .. 0.82
   2 ?    4.1   0.2     0.045        54       1      50 [.     374     427 ..     374     442 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3e-06
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasy 38 
                    +vG+G +Gl aA + a +g++ +l+e+r  +GG+a   
     KIR65858.1 231 VVGGGPAGLGAAVYGASEGLRTVLVERRA-TGGQAGQS 267
                    8**************************95.55555432 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.045
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETT....CEECTS-- CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpg....vrvdygah 50 
                    IvG+  s+  aA + +++ ++v++l ++ +l   ++sy +++     r+ + +h
     KIR65858.1 374 IVGGANSAGQAAVYFSRYAARVHVLIRGADLTASMSSYLIDQldriDRITVHPH 427
                    8999999999999999*99*******************8866644555555555 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   4.0   5.9e-07    0.0007       1      38 [.     228     264 ..     228     269 .. 0.88
   2 ?   -1.0   0.1       0.6   7.2e+02     140     200 ..     282     336 ..     274     355 .. 0.67
   3 ?    1.3   0.0      0.12   1.4e+02     390     410 ..     512     532 ..     507     538 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.9e-07
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGG CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggat 38 
                    D++V+G+G AGL AA+  a +Gl++++ve     gg++
     KIR65858.1 228 DLVVVGGGPAGLGAAVYGASEGLRTVLVERRAT-GGQA 264
                    89***************************9874.6655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.6
                    HHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE--- CS
  FAD_binding_2 140 ghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatg 200
                    g +l  r  ++a+k g +++   e++ L  e g ++   +    +g   +i+a+avvlatg
     KIR65858.1 282 GAQLTDRARRQALKFGAELLSTREVVGL-AEAGSARLLRFD---DG--STIAAHAVVLATG 336
                    6666666777777777777777777777.334444444333...33..3577999999999 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.12
                    ESSBTEEE-STCEESSSSTTS CS
  FAD_binding_2 390 qpipGLYAaGevaaggvhgan 410
                    + +pG +AaG v a++v+ + 
     KIR65858.1 512 SSLPGVFAAGDVRAASVKRVA 532
                    579**********99998765 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.4     0.062        74       1      37 [.     230     261 ..     230     274 .. 0.71
   2 !   14.7   0.1   1.9e-05     0.022     120     155 ..     302     337 ..     282     338 .. 0.83
   3 ?   -3.1   0.0       5.7   6.8e+03     107     142 ..     412     448 ..     407     456 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.062
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepg 37 
                    ++vG+Gp+Gl ++   +++      l+  l++++ +g
     KIR65858.1 230 VVVGGGPAGLGAAVYGASE-----GLRTVLVERRATG 261
                    69********998765544.....4666666666665 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.9e-05
  NAD_binding_9 120 hraevvdleeradgqavlladgaslaadaVvLAlGh 155
                     + evv l+e+++ + ++ +dg+++aa+aVvLA+G 
     KIR65858.1 302 STREVVGLAEAGSARLLRFDDGSTIAAHAVVLATGV 337
                    3679******************************95 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 5.7
  NAD_binding_9 107 llarlpegvtvevh.raevvdleeradgqavlladga 142
                    l+++l +  +++vh ++evv+ + ++  q+++l+d +
     KIR65858.1 412 LIDQLDRIDRITVHpHTEVVAGAGEEHLQRLTLRDTR 448
                    4555555556666645567666666666666666654 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0095        11       2      37 ..     226     259 ..     225     262 .. 0.87
   2 ?    6.1   0.0    0.0044       5.2     142     238 ..     321     414 ..     292     429 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0095
  K_oxygenase   2 ilDligiGiGpsnLsLailleevkkelkalflerqp 37 
                   +Dl+ +G Gp+ L+ a+  ++    l+++ +er+ 
   KIR65858.1 226 FYDLVVVGGGPAGLGAAVYGASEG--LRTVLVERRA 259
                  69*************999988877..9999999886 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0044
  K_oxygenase 142 geeeelearnlvlgvGtepki...PevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrsealeplddspf 236
                  ++ +++ a ++vl++G +  +   P + ++l+g   v+  s ++e    +   +++ +vG+  Sa++ +    r ++   +++++r++ l+++ +s +
   KIR65858.1 321 DDGSTIAAHAVVLATGVSYRMldaPGL-AELTG-RGVFYGSAATEAP--SCVDQDVYIVGGANSAGQAAVYFSRYAA--RVHVLIRGADLTASMSSYL 412
                  4568999*********88766232444.44664.7788877777776..788999***********98877766544..7888888888888777776 PP

  K_oxygenase 237 vn 238
                  + 
   KIR65858.1 413 ID 414
                  65 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.0   0.00036      0.42       1      31 [.     228     256 ..     228     265 .. 0.90
   2 ?    2.2   0.0     0.063        75     115     145 ..     310     341 ..     278     377 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00036
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlie 31 
                    D+vv+G+GpAgl  A     a  gl+ vl+e
     KIR65858.1 228 DLVVVGGGPAGLGAAVYG--ASEGLRTVLVE 256
                    9***********999888..99999999998 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.063
  Lycopene_cycl 115 eea.geslvvleggrkirarlvvdarglaslk 145
                    +ea + +l   ++g +i a +vv a+g+  + 
     KIR65858.1 310 AEAgSARLLRFDDGSTIAAHAVVLATGVSYRM 341
                    33335788999****************54433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 3578.95
//
Query:       KIR65859.1  [L=479]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-21   76.2   0.0    4.5e-21   75.4   0.0    1.3  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    2.7e-10   40.2   0.1    7.3e-10   38.8   0.1    1.7  1  cNMP_binding  Cyclic nucleotide-binding domain
    0.00037   20.5   1.7     0.0028   17.7   0.5    2.4  2  HisKA         His Kinase A (phospho-acceptor) domain
  ------ inclusion threshold ------
       0.02   15.2   0.0       0.33   11.3   0.0    2.6  2  Ish1          Putative stress-responsive nuclear envelope pro
      0.047   13.6   0.0      0.089   12.7   0.0    1.5  1  HATPase_c_5   GHKL domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   1.3e-24   4.5e-21       5     110 ..     363     465 ..     360     467 .. 0.90

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 1.3e-24
                 HHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHH.HHHHTTTEEEEEEETTTEE CS
   HATPase_c   5 rLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkk.lvelmgGeiwvesepgrGt 102
                  L q+  nl+dNa+ + +++g+++v+  + +d+l+++v D+G+Gip + ++++fe+f +   tk  g+gtGlGl i+ + +v++++G+i+v+sep + t
  KIR65859.1 363 ELNQVWTNLIDNALGAMGDEGTLTVRTGRVDDQLTVEVADTGPGIPAAVRPRIFEPFFT---TKPVGEGTGLGLDISYRiVVNKHHGDIRVTSEP-GRT 457
                 689************97788888888776558***************************...9999*************8888************.567 PP

                 EEEEEEES CS
   HATPase_c 103 tftftlpl 110
                  f++ lp 
  KIR65859.1 458 VFRVLLPI 465
                 79988875 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.1     2e-13   7.3e-10       5      86 ..      36     119 ..      32     121 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 2e-13
                   -TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.E.EEEEEE-TTEEESH.HHHHHTS-.-SSEEEESSTEEEEEEEHHHHHHHH CS
  cNMP_binding   5 kagevifrqGdpadslyivlsGevrvyrlsedgke.vvlavlgpGdlfGe.lalltgep.rtatvvAltdsellalprddflell 86 
                    age ++ +G+pa++++++l Gevr++ ++ +g+e  +l++ ++G + G   a l++++ +   + A++d+e ++lp+++f  ++
    KIR65859.1  36 TAGEAVYAEGEPATCFFVLLAGEVRLC-RTIHGEEvEILRTAQRGVYGGAtQAYLDDQQiYRNGMWAVSDAEFFVLPAETFAHAV 119
                   58************************8.899999967999*******8763677766666*********************8876 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.5   7.8e-07    0.0028       2      31 ..     153     195 ..     152     218 .. 0.71
   2 ?    1.3   0.0     0.098   3.5e+02      33      65 ..     284     316 ..     268     318 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 7.8e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC............... CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkre.............g 31 
                 lg + ag+ HEL++P sa   +a+aL+++             g
  KIR65859.1 153 LGALSAGLTHELNNPASAAVRAASALRDRvagmrhklamiadG 195
                 8999**********************99754444444433332 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.098
                 -HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
       HisKA  33 lteelkeyletiesearrldhlvedlLdlsrie 65 
                 +t + + + + i + a r+++lv    ++s+++
  KIR65859.1 284 YTVDTELLMREIADAATRVSKLVGAAKQYSQLD 316
                 67788889999************9888888877 PP

>> Ish1  Putative stress-responsive nuclear envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.23   8.4e+02      11      17 ..      24      30 ..      24      37 .. 0.83
   2 ?   11.3   0.0   9.1e-05      0.33       6      19 ..     231     244 ..     228     246 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.23
        Ish1 11 kWLdshG 17
                +WL++hG
  KIR65859.1 24 AWLAEHG 30
                6****** PP

  == domain 2  score: 11.3 bits;  conditional E-value: 9.1e-05
        Ish1   6 dsdLkkWLdshGip 19 
                 +++L +WLd++Gi+
  KIR65859.1 231 EDELTDWLDDQGIA 244
                 69**********97 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.5e-05     0.089       5     100 ..     363     463 ..     359     464 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.5e-05
  HATPase_c_5   5 dlcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg.......ek.kklesskskkeehGiGlk.sireivkkykgnlsieaedgl 93 
                  +l  +  nl+dNA+ a+ +       +++   + +++l++++  +  g       ++ + ++++k  +e  G+Gl  s r +v+k++g+++++ e g+
   KIR65859.1 363 ELNQVWTNLIDNALGAMGDE----GTLTVRTGRVDDQLTVEVADTGPGipaavrpRIfEPFFTTKPVGEGTGLGLDiSYRIVVNKHHGDIRVTSEPGR 456
                  6778899********99874....57999999999999999999988866554432256677*************75788999***********9998 PP

  HATPase_c_5  94 Ftlsvll 100
                      vll
   KIR65859.1 457 TVFRVLL 463
                  8888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3495.19
//
Query:       KIR65860.1  [L=68]
Description: hypothetical protein TK50_11205 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.17   12.0   0.5       0.18   11.8   0.5    1.1  1  DUF2771   Protein of unknown function (DUF2771)


Domain annotation for each model (and alignments):
>> DUF2771  Protein of unknown function (DUF2771)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5     1e-05      0.18       4      33 ..       2      31 ..       1      45 [. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1e-05
     DUF2771  4 lvavvvvvvaavvavqvwalareeaepedp 33
                +vav+vvvv+avva++ ++ + ++++p +p
  KIR65860.1  2 AVAVAVVVVVAVVAGVAARRSGPGERPAAP 31
                466777777777788777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 510.17
//
Query:       KIR65861.1  [L=340]
Description: aminoglycoside phosphotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-18   65.7  12.1    9.5e-18   65.0  12.1    1.2  1  APH              Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.034   13.4   0.0        3.3    6.8   0.0    2.1  2  Fructosamin_kin  Fructosamine kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0  12.1   1.1e-21   9.5e-18       5     230 ..      36     274 ..      33     286 .. 0.82

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 1.1e-21
                 E--.SSCEEEEEEETT.--EEEEEE-TTS-HHHHH.......HHHHHHHHHHHTT-..B--B-CTTBS-EEETTEEEEEEE----EE-SS.HHHHHHHH CS
         APH   5 lsggasnrtylvttpa.gryvlrrnpparaaeeir.......revallrlLakagv..pvPevlagdtddeeigllfalieyvpgrsllr.klsaaqlp 92 
                 l+gg    +++vt ++ g  +l+++pp+ +a+ +r       +e++++rl+a++ +  pvP+vl+ + d e  +  ++l  ++pgr+l++ + +  +++
  KIR65861.1  36 LGGGGFATVWWVTLDDgGAAALKVAPPP-EARLLRyerglaaAEARYFRLVAAHAPqvPVPRVLHHGRDPERGE--WLLTDRLPGRPLAElTAD-IDAG 130
                 566666679*******88*******999.44444445555569999********999********877777777..9*************5444.4455 PP

                 HHHHHHHHHHCCHHCH.........-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC.. CS
         APH  93 ellealgeflaalhqv.......d.paalpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvd.. 181
                  + +++g++  alh++       d ++a ++++ +a+ + ++ +l++a+ +++a+  ++   +l +++ +++a  l+   ++ llH D   gN+l    
  KIR65861.1 131 PARADFGAATVALHRItgdrygyDgGRAGGPTWSRAFAAIVDDLLADAADWDVAPPGGP---RLIRELVRHHAGALDEVRRPALLHFDGWDGNVLAApd 226
                 555699**********88888884477**********9999999999999*********...6666666777777776779****************76 PP

                 ...TTEEEEE---TT-EEEECCHHHHCCHHHCSCHCCCHCHHHHHHHHCS CS
         APH 182 .pddgrvtGviDfedaglgpplyDlavllrswtseldpeflaallrayeq 230
                   +  r+ G++D e+  +g+pl Dl++ l    +++ +e+++ +lr++  
  KIR65861.1 227 aTGAYRMCGLVDGERYLWGDPLLDLVSPL-L-FRRAEDEPDHPFLRGWRA 274
                 6666677**********************.4.478999999999999972 PP

>> Fructosamin_kin  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0017        15      59     126 ..      78     154 ..      38     165 .. 0.74
   2 ?    6.8   0.0   0.00037       3.3     174     224 ..     196     251 ..     187     301 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0017
  Fructosamin_kin  59 EaesLeala.etqtirvPkvlavGel.kdasfLvleyLelk........lekkesaaelgqqLaklHraseqkefGfd 126
                      Ea   +++a ++ ++ vP+vl++G   ++ ++L+++ L+ +        +++  + a++g +   lHr+++ +++G+d
       KIR65861.1  78 EARYFRLVAaHAPQVPVPRVLHHGRDpERGEWLLTDRLPGRplaeltadIDAGPARADFGAATVALHRITG-DRYGYD 154
                      5666665541466899********9956779*****99754310100123344456788888888888554.678877 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00037
  Fructosamin_kin 174 vervaellskhqpkpsllHGdLWsgNaaltkdge.....pvifdPaay.ygdrEvdl 224
                      v + a  l ++  +p+llH d W gN+ +  d +       ++d   y +gd  +dl
       KIR65861.1 196 VRHHAGAL-DEVRRPALLHFDGWDGNVLAAPDATgayrmCGLVDGERYlWGDPLLDL 251
                      44444444.45679************9887764433444334455444366666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       160  (0.00892409); expected 358.6 (0.02)
Passed bias filter:                      130  (0.00725082); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2506.95
//
Query:       KIR65862.1  [L=329]
Description: dTDP-glucose 4,6-dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-72  244.2   0.0    4.7e-72  243.2   0.0    1.4  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    2.3e-59  200.8   0.0    2.8e-59  200.5   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    5.7e-15   55.1   0.0    7.3e-15   54.7   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    5.9e-14   51.8   0.0    7.1e-14   51.6   0.0    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
    1.2e-13   50.8   0.1    6.6e-12   45.1   0.1    2.4  1  NAD_binding_4    Male sterility protein
      9e-10   38.2   0.0      2e-09   37.0   0.0    1.5  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
    2.4e-05   24.3   0.0    3.7e-05   23.7   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding
     0.0091   15.5   0.3        2.7    7.4   0.0    2.4  2  adh_short        short chain dehydrogenase
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.018   14.6   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
       0.22   11.0   0.0       0.44   10.1   0.0    1.4  2  NmrA             NmrA-like family


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.2   0.0   2.6e-75   4.7e-72       1     322 [.       2     291 ..       2     299 .. 0.88

  Alignments for each domain:
  == domain 1  score: 243.2 bits;  conditional E-value: 2.6e-75
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG+aGf+G++++++ l+       ++ +++++++g+ ++la+     + +++++++gD++D + ++ l++++  d+v+++AA+shVd+s+++P 
     KIR65862.1   2 LVTGGAGFVGANFVRRALAARPGL-RLTVLDALTYAGSRDSLAE-----VADRITFVRGDVCDGDLVDALVSDC--DTVVHFAAESHVDNSLQDPT 89 
                    9*****************997766.56678999999*****985.....5689*******************98..9******************* PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-S...SSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS- CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvq...evpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhesprrg 189
                     ++++nv Gt+ LLea+r++      r++++St+Ev+G++       +tE+ +++P sPY+a+K+++d +v+++ ++yg+ a+++++ n+++p++ 
     KIR65862.1  90 PFLRTNVEGTFVLLEAVRRHD----RRLHHVSTDEVFGSLPlhgGGAFTEQSRYDPSSPYSATKAASDLLVRAWVRSYGVRATTSNCANNYGPYQ- 180
                    *******************86....59*************74335679**********************************************7. PP

                    TTSCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH............ CS
  GDP_Man_Dehyd 190 etfvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiewegkgeeevgrake 285
                       v++ ++r+++++++g++++l +G + ++R w+hv+D+ +a+ l+l ++         get+ +++ +e+++ +l + ++ +            
     KIR65862.1 181 --NVEKFLPRQITNVLRGQRPKL-YGTGANVREWTHVDDHNDAVLLILDAGV-------CGETYLIGSGAEWSNRALLE-LTLT-----------L 254
                    ..799*****************9.8************************997.......45666666666666555543.2221...........1 PP

                    TTGGCCCEECGG--SS--SB--B-THHHHHHH----S CS
  GDP_Man_Dehyd 286 sgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpk 322
                     g+    +d +++rp+++ +++ d sk+++eLgW+p+
     KIR65862.1 255 LGRPADDFDHVPDRPAHDLRYACDSSKIRRELGWRPR 291
                    23455578999*************************8 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.5   0.0   1.6e-62   2.8e-59       1     241 []       1     237 [.       1     237 [. 0.97

  Alignments for each domain:
  == domain 1  score: 200.5 bits;  conditional E-value: 1.6e-62
                 EEEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC....EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg..yevigldrlssasntarledl....elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlq 93 
                 +lVtG++Gf+G+++v++ l++    ++++ld l++a+ + +l+++    ++v++d++d++ +++l++  ++d+v+h+Aa+++v++s +dp+ f+++n++
  KIR65862.1   1 MLVTGGAGFVGANFVRRALAARpgLRLTVLDALTYAGSRDSLAEVadriTFVRGDVCDGDLVDALVS--DCDTVVHFAAESHVDNSLQDPTPFLRTNVE 97 
                 69**************9998877799******************9**********************..8***************************** PP

                 HHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHH CS
   Epimerase  94 gtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirk 192
                 gt  llea+r+++  rl+++s++ev+G  +       t+++ + p+spY+a+K+a++ lv+a+ ++yg++a++ ++ n+yGp+   ++v++++p+ i++
  KIR65862.1  98 GTFVLLEAVRRHDR-RLHHVSTDEVFGSLPLHGGGAFTEQSRYDPSSPYSATKAASDLLVRAWVRSYGVRATTSNCANNYGPY---QNVEKFLPRQITN 192
                 *************9.************98886688899999******************************************...99*********** PP

                 HHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 193 ilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 +l+g+   +l+g+g ++R++ +v+D+ +a+ll+l++   g  ge+y iG
  KIR65862.1 193 VLRGQ-RPKLYGTGANVREWTHVDDHNDAVLLILDA---GVCGETYLIG 237
                 ****9.******************************...99999**998 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   4.1e-18   7.3e-15       1     220 [.       2     216 ..       2     230 .. 0.73

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 4.1e-18
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskv.nvkkviegDvtdkdkleealegvdvvihlaslvdvag.kltedeimkvnvkGTr 97 
                 +vtGgaGF+G++ v++ + + +   + vlD  +    +++l +v ++++++ gDv+d d +++ + + d v+h a+ + v +  +    + + nv+GT 
  KIR65862.1   2 LVTGGAGFVGANFVRRALAARPGLRLTVLDALTYAGSRDSLAEVaDRITFVRGDVCDGDLVDALVSDCDTVVHFAAESHVDNsLQDPTPFLRTNVEGTF 100
                 69********************999*****8888888888777615667*******************************9945566779********* PP

   3Beta_HSD  98 nvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyesl.hqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegd...kllvpl 192
                  +lea ++++ r+l ++S+ ev g      +++ g   +e     ++++y+ +Ka ++ lv +      + g r  T     a  yG+++   k+l ++
  KIR65862.1 101 VLLEAVRRHD-RRLHHVSTDEVFGS----LPLHGGGAFTEQSRYdPSSPYSATKAASDLLVRAWVR---SYGVRATTSN--CANNYGPYQnveKFLPRQ 189
                 *****99998.88999999998887....777766554444443489*******998887764322...2333444432..233455544110444444 PP

   3Beta_HSD 193 lkqlaklglalfkigdeevlsdrvYvgN 220
                 + ++++ +     +g   ++ +++ v+ 
  KIR65862.1 190 ITNVLRGQ-RPKLYGTGANVREWTHVDD 216
                 55555443.4445566666677777665 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0     4e-17   7.1e-14       3     141 ..       1     161 [.       1     227 [. 0.91

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 4e-17
                    EEEESTTSHHHHHHHHHC..TTTSEEEEEE-TT...................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHH CS
  RmlD_sub_bind   3 ilvtGanGqlGseLakql..aeeglevlaltre...................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayav 77 
                    +lvtG+ G +G + ++++  a+ gl ++ l+                     + d+ d + v++l+++  +d vv+ AA   vD+  +++    + 
     KIR65862.1   1 MLVTGGAGFVGANFVRRAlaARPGLRLTVLDALtyagsrdslaevadritfvRGDVCDGDLVDALVSD--CDTVVHFAAESHVDNSLQDPTPFLRT 94 
                    599**********987641145788888886667889999***************************9..999*********************** PP

                    HTHHHHHHHHHHHHCT-EEEEEEEGGGS-S-...TTS-B-TTS----SSHHHHHHHHHHHHHHHH-S CS
  RmlD_sub_bind  78 naeavealAeaaaavgalLihvStDyVFdGe...kkrpYeeddetsPlnvYGrtKlaGEqavlaagk 141
                    n+e++  l ea ++++  L hvStD VF         +++e+++ +P + Y +tK+a    v+a + 
     KIR65862.1  95 NVEGTFVLLEAVRRHDRRLHHVSTDEVFGSLplhGGGAFTEQSRYDPSSPYSATKAASDLLVRAWVR 161
                    ****************************9878878999********************999997544 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.1   3.7e-15   6.6e-12       1     198 [.       3     167 ..       3     174 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 3.7e-15
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--S CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsaA 96 
                    +TG+ GF+G+ ++++ L  +p +++++l              ++l+  +  + l +e+a+ri++v GD+++ +l      ++ l++ +d ++h aA
     KIR65862.1   3 VTGGAGFVGANFVRRALAARPGLRLTVL--------------DALTYAGSRDSL-AEVADRITFVRGDVCDGDL------VDALVSDCDTVVHFAA 77 
                    7999999999999999999886444443..............444555555555.46789**********9986......899************* PP

                    S-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHH CS
  NAD_binding_4  97 tvnfdepyke...llrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvr 188
                      ++d+++++   +lr+NveGt  +le  ++  +   l+hvST  ++     +                   ++++  + +  Y+ +Ka+++ lvr
     KIR65862.1  78 ESHVDNSLQDptpFLRTNVEGTFVLLEAVRRHDR--RLHHVSTdEVFGSLPLHG--------------GGAFTEQSRYDPSSPYSATKAASDLLVR 157
                    ********9988899************9886655..5******66666655544..............5678889999999*************** PP

                    HHHHHH---E CS
  NAD_binding_4 189 earrrsglpv 198
                    ++ r+ g+++
     KIR65862.1 158 AWVRSYGVRA 167
                    **99888776 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   1.1e-12     2e-09       2     131 ..       2     121 ..       1     132 [. 0.82
   2 ?   -2.8   0.0       1.5   2.7e+03     134     156 ..     141     163 ..     139     177 .. 0.72

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1.1e-12
                      EEETTTSHHHHHHHHHHHHHB-S.EEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpk.kiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      lvtG++G +G ++vr+ l+ +p  ++ +l+   ++    +++l +e+++ ++    + v gdv d + ++ +++  ++d+v+h AA  hV    
       KIR65862.1   2 LVTGGAGFVGANFVRRALAARPGlRLTVLDALTYA--GSRDSL-AEVAD-RI----TFVRGDVCDGDLVDALVS--DCDTVVHFAAESHVDNSL 85 
                      9******************9886367777664443..334444.44554.44....4569**************..****************** PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGG CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieagvkkvvliStDKA 131
                      + p+  ++tNv gt  ++ea  +++ +++  +StD  
       KIR65862.1  86 QDPTPFLRTNVEGTFVLLEAVRRHD-RRLHHVSTDEV 121
                      **************99999887766.77888999975 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.5
                      --SHHHHHHHHHHHHHHHGGG-- CS
  Polysacc_synt_2 134 PtnvmGatKrlaekllqalakes 156
                      P + + atK+++++l+ a  ++ 
       KIR65862.1 141 PSSPYSATKAASDLLVRAWVRSY 163
                      7888999******9998876655 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.1e-08   3.7e-05       1     104 [.       5     124 ..       5     165 .. 0.66

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.1e-08
                     TTTSHHHHHHHHHHHHC-.T-EEEEE.....ETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHH............ CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.ghevtal.....vRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeeg............ 77 
                     G+ G vG   v+++la++ g+++t+l     + + ++lae++  ++++ v gdv d + + + ++++d+Vv  ++ ++ d+              
      KIR65862.1   5 GGAGFVGANFVRRALAARpGLRLTVLdaltyAGSRDSLAEVA--DRITFVRGDVCDGDLVDALVSDCDTVVHFAAESHVDNSLqdptpflrtnve 97 
                     999**************9877776653222234467777765..8***********************876555544443333344455555556 PP

                     .HHHHHHHHHHCT--EEEEEEETTTTSG CS
  NAD_binding_10  78 .aknivdaakeagvkRfvlvsaigvgde 104
                      +  +++a+++++ +R+  vs+  v  +
      KIR65862.1  98 gTFVLLEAVRRHD-RRLHHVSTDEVFGS 124
                     6888888887765.57777776555544 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0015       2.7       3      71 ..       1      69 [.       1     112 [. 0.78
   2 !    5.9   0.0    0.0043       7.7     145     169 ..     141     165 ..     133     176 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0015
                EEEESTTSHHHHHHHHHHHHT..T-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelake..GakvvvvdrseekleevakelkeegakalaiqvDvtdreevealveka 71
                +lvtG+++ +G +++++ +++  G +++v+d    + +   ++l e +++++++++Dv d + v+alv+++
  KIR65862.1  1 MLVTGGAGFVGANFVRRALAArpGLRLTVLDAL--TYAGSRDSLAEVADRITFVRGDVCDGDLVDALVSDC 69
                59*************998765226777776655..555588888888999*****************9987 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0043
                 TBHHHHHHHHHHHHHHHHHHHHHGG CS
   adh_short 145 gvaaYsAsKaavagltrslakelap 169
                   ++YsA+Kaa + l+r++ + +  
  KIR65862.1 141 PSSPYSATKAASDLLVRAWVRSYGV 165
                 5689*************99887765 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   9.9e-06     0.018      46     125 ..      44     190 ..      33     215 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.9e-06
  Methyltransf_15  46 gvsdkitlvlgdvfe................................................llaklklekikvdlvflSpP.wGGpsYkkqe 90 
                      +v+d+it+v gdv +                                                  +  +l+++++d vf S P  GG  +++q 
       KIR65862.1  44 EVADRITFVRGDVCDgdlvdalvsdcdtvvhfaaeshvdnslqdptpflrtnvegtfvlleavRRHDRRLHHVSTDEVFGSLPlHGGGAFTEQS 137
                      699*******************************************************99965333456777799********559******** PP

  Methyltransf_15  91 kfdlkk..klkplkleqllke................slklskniilfLPrns 125
                       +d  +  +  +++ + l+++                     +n+  fLPr+ 
       KIR65862.1 138 RYDPSSpySATKAASDLLVRAwvrsygvrattsncanNYGPYQNVEKFLPRQI 190
                      ***96643444455555555588888888888887776777788888888875 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00025      0.44       2      73 ..       2      77 ..       1      88 [. 0.85
   2 ?   -3.6   0.0       3.7   6.6e+03     124     140 ..     155     171 ..     140     183 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00025
                EESSTTSHHHHHHHHHHHHHT-EEEEEES-S.....-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE--- CS
        NmrA  2 lviGaTGrqGksvvrallkaghkvralvRdt.....kselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtg 73
                lv+G++G  G+ +vr +l+a    r  v d      +++ +++++++  ++v gd+ d +++++++++ d+v    +
  KIR65862.1  2 LVTGGAGFVGANFVRRALAARPGLRLTVLDAltyagSRDSLAEVADR-ITFVRGDVCDGDLVDALVSDCDTVVHFAA 77
                8*****************98888888888877777799999999887.89********************9976655 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.7
                 HHHHHHHHCTS-EEEEE CS
        NmrA 124 eieeyvralgipytfvy 140
                  ++  vr+ g+++t   
  KIR65862.1 155 LVRAWVRSYGVRATTSN 171
                 57777777777777554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2359.17
//
Query:       KIR65863.1  [L=323]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-24   86.7   0.0    2.7e-24   86.2   0.0    1.2  1  ABC_tran      ABC transporter
    3.7e-13   49.9   0.0    9.8e-08   32.2   0.0    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    7.4e-09   36.2   0.0    1.4e-08   35.3   0.0    1.5  1  DUF4162       Domain of unknown function (DUF4162)
     0.0014   18.2   0.0     0.0082   15.6   0.0    1.9  2  KdpD          Osmosensitive K+ channel His kinase sensor doma
     0.0026   18.3   0.7      0.012   16.2   0.1    2.3  2  AAA_18        AAA domain
     0.0087   16.5   2.8      0.014   15.8   0.3    2.1  2  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.024   14.4   1.4      0.041   13.6   0.1    2.1  3  AAA_30        AAA domain
      0.024   15.1   0.0      0.034   14.7   0.0    1.1  1  AAA_23        AAA domain
      0.027   14.4   0.0      0.088   12.8   0.0    2.0  1  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 
      0.031   14.6   0.0       0.23   11.7   0.0    2.1  1  AAA_22        AAA domain
      0.035   13.7   0.0      0.053   13.1   0.0    1.3  1  SRP54         SRP54-type protein, GTPase domain
      0.057   13.1   0.0        1.9    8.1   0.0    2.0  2  AAA_15        AAA ATPase domain
      0.069   13.6   0.0       0.46   10.9   0.0    2.3  1  AAA           ATPase family associated with various cellular 
      0.072   12.9   0.1       0.26   11.1   0.1    1.9  2  ACT           ACT domain
      0.077   13.2   0.0       0.98    9.7   0.0    2.5  2  SbcCD_C       Putative exonuclease SbcCD, C subunit
       0.15   11.8   0.0       0.28   10.9   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
       0.17   11.8   0.0       0.24   11.3   0.0    1.2  1  Rad17         Rad17 P-loop domain
       0.17   12.0   0.0       0.22   11.6   0.0    1.4  1  CbiA          CobQ/CobB/MinD/ParA nucleotide binding domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.0   2.7e-27   2.7e-24       1     136 [.      23     166 ..      23     167 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 2.7e-27
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 l+  +l +++g++ +++G+nGaGK+t +++l+ ll+ ++G+ ++ g d+ + +  ++r++ig + q + +++ l+ +en              ++++++
  KIR65863.1  23 LDGFDLRVRPGTVCGLLGPNGAGKTTAVRILSTLLRHDSGRAEVAGFDVAR-QPDQVRHRIGLVGQRAAVDEVLSGHENlvvfgrlchlgakRARQRAS 120
                 678899*********************************************.88899*********************************9888888** PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++l+++gl +   ++v    + +SgG+++r+ la+ ++ +p +l+lDEpt
  KIR65863.1 121 ELLDRFGLADAGGRPV----RAYSGGMRRRLDLAAGMILAPAVLFLDEPT 166
                 ****************....*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   8.4e-06    0.0083       3      24 ..      37      58 ..      35      89 .. 0.81
   2 !   32.2   0.0   9.8e-11   9.8e-08     228     297 ..     130     196 ..      90     199 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.4e-06
      AAA_21  3 vliGpNgsGKSnLLdaldllar 24
                +l GpNg+GK++  ++l+ l r
  KIR65863.1 37 GLLGPNGAGKTTAVRILSTLLR 58
                699**************99965 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 9.8e-11
      AAA_21 228 dgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 d + +p+r  S G++r l l++ ++ a+   ++l++DEp +gL+P+   +++e ++el r g+ v+ltT+
  KIR65863.1 130 DAGGRPVRAYSGGMRRRLDLAAGMILAP---AVLFLDEPTTGLDPRSRNEVWEAVRELVRAGTTVLLTTQ 196
                 5567899999****************99...**************************************6 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.4e-11   1.4e-08       1      80 [.     220     310 ..     220     311 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.4e-11
                 E-HHHHHTTS-SSEEEEE........-------..--.-EEEE-TTS-EEEEE--.-----------.----EEEEEEEE---HHHHHHHH CS
     DUF4162   1 GtleeiKrsygknrieve........adaeelleepg.veeveeeggelelkled.eeaanellkal.tsgveirsFeeeePsLndIFiek 80 
                 Gt++++K+++g++ri +         a  ++l ++ g   ev+ + + ++ ++e+   a  e+l+al ++gv ++ +++++P+L+++F+++
  KIR65863.1 220 GTPDDLKARLGGDRIDLVvrdaadlaAAGAQLGRVAGgEPEVDPDRRLVSARVEHrAGALTEVLRALdAAGVAVEDVALRRPTLDEVFLHL 310
                 9***************66655533322244444446667777777788******999**********77*******************987 PP

>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.39   3.9e+02      59     102 ..      75     118 ..      43     132 .. 0.73
   2 !   15.6   0.0   8.2e-06    0.0082      64     148 ..     138     223 ..     113     247 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.39
        KdpD  59 prkeveykgkeleeldldailarkpevvlvDelahtnapgsrhe 102
                 p +  +  g   ++  +d++l+ + ++v+   l h  a+ +r++
  KIR65863.1  75 PDQVRHRIGLVGQRAAVDEVLSGHENLVVFGRLCHLGAKRARQR 118
                 4444444466778889999*********9999999988887764 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 8.2e-06
        KdpD  64 eykgkeleeldldailarkpevvlvDelahtnapgsrhekryqdveelLeagidVi.ttvnvqhleslndvvekitgvrv.retvPd 148
                 +y+g   ++ldl a +   p+v+++De      p sr+ + ++ v+el++ag  V+ tt  + + + l+d ++ + g rv  e  Pd
  KIR65863.1 138 AYSGGMRRRLDLAAGMILAPAVLFLDEPTTGLDPRSRN-EVWEAVRELVRAGTTVLlTTQYLDEADRLADRISVLDGGRViAEGTPD 223
                 67888999*******************99888888876.57*************973666677777788777766654431455555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.2e-05     0.012       3      94 ..      38     118 ..      37     129 .. 0.84
   2 ?   -2.0   0.1       5.1   5.1e+03      96     113 ..     186     207 ..     172     212 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.2e-05
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaakdi 94 
                 l G+ G+GKtt  + Ls +l   ++ +  a   g    ++p+  +  +r+    + +++d++         ++nlv+ g+l++l   +a+++
  KIR65863.1  38 LLGPNGAGKTTAVRILSTLL---RHDSGRAEVAGFDVARQPD--QVRHRIGLVGQRAAVDEVLSG------HENLVVFGRLCHLGAKRARQR 118
                 78***************996...8888888888888888898..778888887777777777774......799**********99999876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 5.1
      AAA_18  96 k....vvLtaspeelleRlekR 113
                 +    v Lt+ +   ++Rl++R
  KIR65863.1 186 RagttVLLTTQYLDEADRLADR 207
                 2335688999998889999988 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   1.4e-05     0.014      22     128 ..      33     186 ..      22     206 .. 0.63
   2 ?    0.9   0.3      0.52   5.2e+02      57     129 ..     219     285 ..     177     296 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.4e-05
      AAA_16  22 grpelvllsGesGvGKsslvrellralekd.....ggif.lrgkcdql.esa.......ipysalaqalareellrqlldeaesaeleawrekleeala 106
                 g   ++ l G+ G GK++ vr l + l+ d      + f ++ + dq  +         ++ + +++  ++  ++  l+   ++  +++ + +l+++++
  KIR65863.1  33 G--TVCGLLGPNGAGKTTAVRILSTLLRHDsgraeVAGFdVARQPDQVrH-RiglvgqrAAVDEVLSGHENLVVFGRLCHLGAK-RARQRASELLDRFG 127
                 3..577899***********999977777777664366677777777731.224444435556688888888899999888555.44444444677777 PP

      AAA_16 107 .....................................avpelagaeasrllellkrlla 128
                                                      ++  l++ +++ ++e++++l++
  KIR65863.1 128 ladaggrpvraysggmrrrldlaagmilapavlfldePTTGLDPRSRNEVWEAVRELVR 186
                 77777776666666666666666556666666655555555555555666666666553 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.52
      AAA_16  57 rgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea......srllellkrllal 129
                 +g+ d+l            l   + +  + ++  +a+l+a+ ++l ++++  pe++++ +      ++ + +l++ l+ 
  KIR65863.1 219 EGTPDDL---------KARL-GGDRIDLVVRD--AADLAAAGAQLGRVAGGEPEVDPDRRlvsarvEHRAGALTEVLRA 285
                 3333333.........3333.32555555555..557888888888888888888888777776666666666666644 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   4.1e-05     0.041      19      51 ..      34      68 ..      27     130 .. 0.74
   2 ?   -2.3   0.0       3.1   3.1e+03      46      67 ..     188     209 ..     176     258 .. 0.62
   3 ?   -3.0   0.0       5.1   5.1e+03     145     158 ..     273     286 ..     248     300 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.1e-05
      AAA_30 19 rvavltGpAGtGKttalkalreaweaa.g.grvig 51
                 v+ l Gp G+GKtta++ l  +++++ g  +v+g
  KIR65863.1 34 TVCGLLGPNGAGKTTAVRILSTLLRHDsGrAEVAG 68
                578899*****************999955333333 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.1
      AAA_30  46 ggrviglAptgkaAkvLaeelg 67 
                 g +v++ +     A++La+ + 
  KIR65863.1 188 GTTVLLTTQYLDEADRLADRIS 209
                 4455555555555555554443 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.1
      AAA_30 145 gigtaeLtevvRqk 158
                 ++++  Ltev R  
  KIR65863.1 273 EHRAGALTEVLRAL 286
                 55555666666653 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.4e-05     0.034      24      51 ..      38      65 ..      24     100 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.4e-05
      AAA_23 24 ItGpNGaGKTTildAiklaLygetprls 51
                + GpNGaGKTT ++ +   L ++++r +
  KIR65863.1 38 LLGPNGAGKTTAVRILSTLLRHDSGRAE 65
                78************99999988877765 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.9e-05     0.088       1      11 [.     215     225 ..     215     227 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.9e-05
  BCA_ABC_TP_C   1 rvIAeGtPaEv 11 
                   rvIAeGtP++ 
    KIR65863.1 215 RVIAEGTPDDL 225
                   8********86 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00023      0.23      10     102 ..      38     203 ..      30     219 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00023
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee................................erpevvfvtlpsst..sskdllrellralglelka.... 70 
                 + G+ G+GKTt +r l   l  ++  +e                                ++  vvf  l +++    ++ ++ell  +gl   +    
  KIR65863.1  38 LLGPNGAGKTTAVRILSTLLRHDSGRAEvagfdvarqpdqvrhriglvgqraavdevlsgHENLVVFGRLCHLGakRARQRASELLDRFGLADAGgrpv 136
                 77************9999997777666688899999999999888888888888888888777777666666666567777888888888877775555 PP

      AAA_22  71 .................................erlsseellealeqalrarav..ielliiDEaqh 102
                                                   + s+ e++ea+++ +ra  +       +DEa++
  KIR65863.1 137 raysggmrrrldlaagmilapavlfldepttglDPRSRNEVWEAVRELVRAGTTvlLTTQYLDEADR 203
                 5555555555555555555555555555555555555555555555555555553333334555555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.3e-05     0.053       4      42 ..      36      74 ..      33      99 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.3e-05
                EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSST CS
       SRP54  4 illvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRa 42
                + l+G++GaGKTt++  L+ ll+++  ++ ++  D+ R 
  KIR65863.1 36 CGLLGPNGAGKTTAVRILSTLLRHDSGRAEVAGFDVARQ 74
                5689*********************99999999999885 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0019       1.9      28      50 ..      38      60 ..      27      85 .. 0.88
   2 ?    2.9   0.0     0.073        73     324     363 ..     157     195 ..     148     195 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0019
      AAA_15 28 liGkNnsGKSsilealdlFlnnk 50
                l G+N++GK++++++l  +l  +
  KIR65863.1 38 LLGPNGAGKTTAVRILSTLLRHD 60
                67**************9999855 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.073
      AAA_15 324 nvilliEEPEahLHpqaqkvlikllkelandnktQviitT 363
                 +++l+++EP + L p   ++++++ +el++ +   v++tT
  KIR65863.1 157 PAVLFLDEPTTGLDPRSRNEVWEAVRELVRAGT-TVLLTT 195
                 5799*************************9996.788877 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00046      0.46       3      23 ..      38      58 ..      36     213 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00046
                EESSTTSSHHHHHHHHHHHHT CS
         AAA  3 lyGppGtGKTllakavakelg 23
                l Gp G GKT++++ + + l 
  KIR65863.1 38 LLGPNGAGKTTAVRILSTLLR 58
                78*************998874 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.6   2.6e+03      35      64 ..     222     253 ..     218     256 .. 0.72
   2 ?   11.1   0.1   0.00026      0.26       3      50 ..     268     312 ..     266     322 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.6
                 EESTT..ECEEEEEEEEEEHHHHHHHHHHHHT CS
         ACT  35 ssedk..vagivfvvivvdeedleevlealkk 64 
                 +++ k  ++g  +  +v d++dl+++ ++l +
  KIR65863.1 222 PDDLKarLGGDRIDLVVRDAADLAAAGAQLGR 253
                 55555667777888899999999998777765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00026
                 EEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEE CS
         ACT   3 lrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivv 50 
                 ++ +v+ r G+L +v++al  +g+ ++ +  r+      ++vf+ +++
  KIR65863.1 268 VSARVEHRAGALTEVLRALDAAGVAVEDVALRRPTL---DEVFLHLTG 312
                 6678999*********************99999976...666665554 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00098      0.98      62      89 ..     155     182 ..     137     183 .. 0.83
   2 ?    0.4   0.0      0.79   7.8e+02      62      84 ..     296     318 ..     278     321 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00098
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllelle 89 
                  a++++fLDE   +lD++s++++ e+++
  KIR65863.1 155 LAPAVLFLDEPTTGLDPRSRNEVWEAVR 182
                 57899*****************999876 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.79
     SbcCD_C  62 palrlvfLDEAFsklDeesiatl 84 
                  alr   LDE F  l +++++t+
  KIR65863.1 296 VALRRPTLDEVFLHLTGRRTETA 318
                 5566678*****99999999886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00029      0.28      16      46 ..      27      57 ..      22      64 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
      AAA_29 16 tieidlkgatlltGpsGsGKSTllDAiqalL 46
                ++++++  ++ l Gp+G+GK+T +  +++lL
  KIR65863.1 27 DLRVRPGTVCGLLGPNGAGKTTAVRILSTLL 57
                566776668889**********987777776 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00024      0.24      43      69 ..      31      57 ..      20      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00024
       Rad17 43 rkkriLLisGPsGCgkstvvkvLskel 69
                r+  +  + GP G gk+t+v++Ls  l
  KIR65863.1 31 RPGTVCGLLGPNGAGKTTAVRILSTLL 57
                555566688**************9876 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00022      0.22       9      55 ..      43     127 ..      40     310 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00022
                 TSSHHHHHHHHHHHHHH..TT--EEEEEEEESSCCCCHHTTEB-HHHH....................................C CS
                 xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................x RF
        CbiA   9 GvGKTtlaanLaralar..rglrVllvDaDpqannlaileglendiep....................................d 55 
                 G+GKTt +  L ++l    ++ +V+ +D+  q    ++  gl+++++                                     +
  KIR65863.1  43 GAGKTTAVRILSTLLRHdsGRAEVAGFDVARQPDQVRHRIGLVGQRAAvdevlsghenlvvfgrlchlgakrarqraselldrfG 127
                 99*************9965699********9999999977777777777779999999999999999966664444444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2203.67
//
Query:       KIR65864.1  [L=929]
Description: helicase SNF2 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-48  164.7   0.0    4.1e-48  163.9   0.0    1.4  1  SNF2_N      SNF2 family N-terminal domain
    1.1e-22   80.4   2.9    1.1e-22   80.4   2.9    2.2  2  DUF3670     SNF2 Helicase protein
    2.3e-19   69.8   0.0    4.1e-19   69.0   0.0    1.4  1  Helicase_C  Helicase conserved C-terminal domain
     0.0098   15.9   0.0      0.016   15.2   0.0    1.3  1  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.9   0.0   9.2e-52   4.1e-48      56     348 ..     483     742 ..     476     744 .. 0.89

  Alignments for each domain:
  == domain 1  score: 163.9 bits;  conditional E-value: 9.2e-52
                 --EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------EEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  56 rGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydvvi 154
                  GG LaD+mGLGKTv+v++l l     ++ ++        ag+tL+v+Pas+l +We+ei+r++++ ++r ++++ ++  +            + + v+
  KIR65864.1 483 FGGCLADDMGLGKTVTVISLHL----RRQAEP------ATAGATLVVCPASVLGNWEREIRRFAPGATVRRFHGTARS-LD----------GLTGGFVL 560
                 59******************99....223333......458****************************999988863.22..........3589**** PP

                 E-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTHHHHH.HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
      SNF2_N 155 ttYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllqrpie.aq 252
                 t+Y +++ +a       +l    w  vv DE++ +kn  s +a+a++ + ++ r+ ltGTP+ n+l++l+++l+   ++ +++   f+    rpie   
  KIR65864.1 561 TSYGTMRVDA------GHLAGHGWGLVVADEAQYVKNRLSGTAKALRAIPARARVALTGTPVENNLSELWAILDWTTPGLLDSVGAFRATWARPIEvDR 653
                 *******888......9*******************************************************************************555 PP

                 HHHHHHHHHTT-STTEE---GGGT..--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHHHHHHHHHH--- CS
                 xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 253 aekgrsrLlqllqrlmlrrakkdv..eknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilelllelrqacnhpq 348
                 +   ++rL  l ++++lrr+k+d     +lPpkt+  ++++l+++++ +Y+r+  +   +++a+++++++            +l+ll  l+q+cnhp 
  KIR65864.1 654 DGPAVARLSRLARPFLLRRRKSDPgiAPELPPKTVTDHLVSLTAEQAALYQRVVADVLAEIRASTTTIARRG----L-----VLKLLVGLKQVCNHPA 742
                 566799*****************976789**********************888777777777777665443....3.....7999**********95 PP

>> DUF3670  SNF2 Helicase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   2.9   2.4e-26   1.1e-22       2     136 ..     290     417 ..     289     418 .. 0.87
   2 ?   -1.4   0.2      0.44     2e+03      25      54 ..     841     870 ..     836     927 .. 0.43

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 2.4e-26
     DUF3670   2 vpdalelddeeaaefLkeaaeaLeaaGvgVllPrwlkkrarprltlklavkgp..asaakesklgldalldfdwelalGdeeLseeEldrLaeakrpLv 98 
                 +p +lel de+++++L+ a ++L+aaG++V +P ++    +++l +++ v++p  + a+ ++++   a +  +w+l+l ++ L+ +E+d L+++ rp+v
  KIR65864.1 290 APVELELLDEDLVDLLGGAEARLAAAGIDVEWPPGI----SRELAARVLVSSPpeRPAEVAEFFRSAAPMPLSWQLTLAGDALTDAEMD-LVAKSRPIV 383
                 6889********************************....6666666666666442355569**************************7.9999***** PP

     DUF3670  99 rlrgqWvevdpeelrraleflkrreekkltladaLraa 136
                 rlr++Wv+v+pe +r+a+e++ +    + ++ daL+a+
  KIR65864.1 384 RLRDRWVAVEPELARKARERQLK----PRRAYDALAAT 417
                 *********************99....56777777765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.44
     DUF3670  25 eaaGvgVllPrwlkkrarprltlklavkgp 54 
                 + a   V+  rw++  ++++ t ++   g+
  KIR65864.1 841 TRADHVVHYDRWWNPAVEEQATDRAYRIGQ 870
                 556666677777733333333333333333 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   9.2e-23   4.1e-19       2     111 .]     758     869 ..     757     869 .. 0.89

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 9.2e-23
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHH...HHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSS.EEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlekvkll...lekkgikvavlhgelpqnereeileqfnkgesd.vLiatdvaerGidipkvnlVinfdlpr 95 
                 kl+ l +ll +  +e+g +l+f+++++++   +ll   l ++g+ +  lhg +p  +ree +++f++ge+  +L++ ++a++G++++++++V+++d ++
  KIR65864.1 758 KLQLLDDLLdTILAEDGAALVFTQYVQMA---RLLqrhLAERGVPAQLLHGGTPVPQREELVRRFQAGEVPvFLLSLKAAGTGLNLTRADHVVHYDRWW 853
                 6677777777667999***********99...55522244559******************************************************** PP

                 SHHHHHHHHTTSSSTT CS
  Helicase_C  96 nvtsyiqriGRtgRag 111
                 n++   q+ +R++R+g
  KIR65864.1 854 NPAVEEQATDRAYRIG 869
                 **************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.6e-06     0.016       4     169 ..     464     615 ..     461     617 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.6e-06
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--...... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdst 102
                 lreyQ + ++ l+  ++      g+++   G GKT++ ++l  r + +     + ++v   s+l  +++e+++f++ a+      ++g  ++    d  
  KIR65864.1 464 LREYQLRGLRWLE-RMT-SLGFGGCLADDMGLGKTVTVISLHLRRQAEPATAGATLVVCPASVLGNWEREIRRFAPGAT---VRRFHGTARSL---DGL 554
                 7888888876554.555.688899**************9999998888777766666666789999***********94...56666666666...668 PP

                 .-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS..TTTHHHHHT---SEEEEEESS- CS
      ResIII 103 nkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.kswreilekfkeavllglTATp 169
                 +  +++t++ ++  d         +l  +   +++ DEa  ++   +   ++l+++++  +++lT+Tp
  KIR65864.1 555 TGGFVLTSYGTMRVDA-------GHLAGHGWGLVVADEAQYVKNRlSGTAKALRAIPARARVALTGTP 615
                 8899**********99.......889999999*******9999975577789***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (929 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 6136.16
//
Query:       KIR65865.1  [L=387]
Description: hypothetical protein TK50_11240 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-10   41.2   0.3    1.6e-10   41.2   0.3    4.5  5  HTH_31    Helix-turn-helix domain
    0.00016   21.6   0.0    0.00053   20.0   0.0    1.9  2  HTH_3     Helix-turn-helix
     0.0097   15.9   0.0      0.021   14.8   0.0    1.5  1  HTH_19    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.096   12.4   0.0    1.5  1  DEAD      DEAD/DEAH box helicase
       0.16   12.0   0.0        0.5   10.4   0.0    1.9  2  KorB      KorB domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.3   4.4e-14   1.6e-10       7      61 ..       2      56 ..       1      58 [. 0.95
   2 ?   -2.6   0.0       2.1   7.4e+03      45      59 ..      75      89 ..      64      91 .. 0.75
   3 ?   -2.4   0.1       1.8   6.5e+03       2       9 ..     190     197 ..     182     204 .. 0.76
   4 ?   -0.7   0.5      0.52   1.9e+03      46      63 ..     284     301 ..     276     321 .. 0.55
   5 !    4.8   0.2    0.0098        35      38      57 ..     368     386 ..     359     387 .] 0.84

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 4.4e-14
      HTH_31  7 ralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaer 61
                ++lR r+ ++q+ +A+rlg s+s++ ++E+G r++ + +v++ +a++l +dp ++
  KIR65865.1  2 ARLRSRRHMTQQMLADRLGKSKSWVDKVERGVRTLDRFSVIAEVATVLCVDPTLL 56
                68*************************************************9875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.1
      HTH_31 45 avlealaralgldpa 59
                ++++a++  +++dp+
  KIR65865.1 75 DAVRAALARYDTDPD 89
                578888888888876 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.8
      HTH_31   2 LGalLral 9  
                 LG+ Lral
  KIR65865.1 190 LGQALRAL 197
                 67777765 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.52
      HTH_31  46 vlealaralgldpaerae 63 
                  ++a+a++ ++ +a +++
  KIR65865.1 284 RVTAAADLGDAHGAVTRH 301
                 555555555544444444 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.0098
      HTH_31  38 rrgrpspavlealaralgld 57 
                 r g p pa++++la+algl+
  KIR65865.1 368 RGG-PLPADVASLATALGLP 386
                 444.668***********97 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.5e-07   0.00053       3      36 ..       3      36 ..       1      54 [. 0.84
   2 ?   -2.9   0.0       2.1   7.4e+03      31      50 ..     368     385 ..     360     386 .. 0.62

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.5e-07
                HHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCS CS
       HTH_3  3 elRkqlglsqeeLAeklGvsrstisriEnGernP 36
                +lR  + ++q++LA++lG s+s + + E+G r  
  KIR65865.1  3 RLRSRRHMTQQMLADRLGKSKSWVDKVERGVRTL 36
                4566899***********************8844 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.1
                 TTSSCSBHHHHHHHHHHHTS CS
       HTH_3  31 nGernPsletlkklakaLgv 50 
                 +G   P +  +  la aLg+
  KIR65865.1 368 RG-G-PLPADVASLATALGL 385
                 55.4.666677778888876 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.9e-06     0.021       6      41 ..       3      37 ..       2      57 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.9e-06
      HTH_19  6 eaReelgltqeelaerlgisrskisaiEngkkdvps 41
                ++R+ + +tq++la+rlg s+s   + E g + +++
  KIR65865.1  3 RLRSRRHMTQQMLADRLGKSKSWVDKVERGVR-TLD 37
                79**************************9987.775 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.7e-05     0.096       8      39 ..     122     152 ..     119     213 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.7e-05
                 HHHHHTTCEEEEEESTTSSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   8 iplilgggdvlvaaeTGsGKTlaflipvlqiv 39 
                 +p +l g+  l++a+TGsGKT+  l+ v++i 
  KIR65865.1 122 LPGLL-GDTQLAHAATGSGKTASLLVQVYRIA 152
                 56666.678899***********999998766 PP

>> KorB  KorB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00014       0.5       4      20 ..      10      26 ..       7      45 .. 0.92
   2 ?   -3.5   0.0         3   1.1e+04      10      34 ..     288     312 ..     283     313 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
        KorB  4 vkqadIAkaLGksksfv 20
                ++q+  A++LGksks+v
  KIR65865.1 10 MTQQMLADRLGKSKSWV 26
                78999***********9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3
        KorB  10 AkaLGksksfvslylklldvpdylr 34 
                 A+ LG     v++++ +  + ++lr
  KIR65865.1 288 AADLGDAHGAVTRHAEVIALGQWLR 312
                 6677777788899998888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2630.76
//
Query:       KIR65866.1  [L=65]
Description: hypothetical protein TK50_11245 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.2   11.4   3.0       0.25   11.1   2.7    1.4  1  Bim_N     Bim protein N-terminus


Domain annotation for each model (and alignments):
>> Bim_N  Bim protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.7   1.4e-05      0.25       4      28 ..      12      37 ..       9      41 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.4e-05
       Bim_N  4 dlsseCdr.EGGQLQpteRpaqprqL 28
                d+ s+ ++  G QLQ +eR a  ++L
  KIR65866.1 12 DMDSDQEQsRGEQLQEAEREAARQRL 37
                7888888879**********998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 482.85
//
Query:       KIR65867.1  [L=74]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-15   57.1   0.0    1.2e-15   56.9   0.0    1.0  1  GntR            Bacterial regulatory proteins, gntR family
    0.00017   21.4   0.0    0.00024   21.0   0.0    1.2  1  HTH_11          HTH domain
    0.00097   19.4   0.0     0.0012   19.1   0.0    1.1  1  Rrf2            Transcriptional regulator
     0.0053   16.6   0.0     0.0074   16.2   0.0    1.2  1  MarR_2          MarR family
     0.0087   16.0   0.0     0.0087   16.0   0.0    1.2  1  HTH_Crp_2       Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.013   15.7   0.0      0.016   15.4   0.0    1.1  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.024   14.2   0.0      0.032   13.8   0.0    1.2  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.027   14.4   0.0      0.035   14.0   0.0    1.2  1  TrmB            Sugar-specific transcriptional regulator TrmB
       0.04   13.6   0.0      0.053   13.2   0.0    1.2  1  HTH_41          Helix-turn-helix domain
      0.045   13.7   0.0      0.062   13.2   0.0    1.2  1  MarR            MarR family
      0.092   12.2   0.0        0.1   12.1   0.0    1.1  1  RepL            Firmicute plasmid replication protein (RepL)


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   7.1e-19   1.2e-15       2      64 .]       8      70 ..       7      70 .. 0.99

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 7.1e-19
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                y+++++ ++ +I+sgel++++kLPs  eLa++ +Vs  tv++A   L  +glv  +qg+G+fV
  KIR65867.1  8 YRRIADGITGQIRSGELKAHEKLPSTAELAEKHHVSLATVNRAFGLLHDRGLVYGKQGKGVFV 70
                89************************************************************9 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.5e-07   0.00024       9      54 ..      24      68 ..      22      69 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.5e-07
      HTH_11  9 LleargpisgeeLAeeLnvSrrtvrrdIkaLeelgvpIesepgrGY 54
                L+++++  s +eLAe+ +vS +tv r    L + g  +++++g+G 
  KIR65867.1 24 LKAHEKLPSTAELAEKHHVSLATVNRAFGLLHDRG-LVYGKQGKGV 68
                5444444899*************************.********96 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   7.5e-07    0.0012      22      62 ..      27      67 ..      22      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 7.5e-07
                TCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT- CS
        Rrf2 22 eeepvsseeiaerqnispsylekilakLrkaglvksvrGkg 62
                +e+  s++e+ae++ +s   + + +  L   glv  ++Gkg
  KIR65867.1 27 HEKLPSTAELAEKHHVSLATVNRAFGLLHDRGLVYGKQGKG 67
                3445799********************************94 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.5e-06    0.0074      13      52 ..      23      61 ..      22      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.5e-06
                HHHCTTTSEE.EHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2 13 aLgrrpgrdl.tvgelarrlglsksavsrilkrLvaaGLve 52
                +L +++   l + +ela++ ++s ++v+r+   L ++GLv 
  KIR65867.1 23 ELKAHEK--LpSTAELAEKHHVSLATVNRAFGLLHDRGLVY 61
                5667776..6699**************************96 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.3e-06    0.0087      23      57 ..      32      68 ..       9      74 .] 0.81

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.3e-06
                HHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.E.TEEE CS
   HTH_Crp_2 23 tqeelAsmlGltretvsrilseLkreglis.r.grri 57
                + +elA+   ++  tv+r+++ L ++gl+  + g+++
  KIR65867.1 32 STAELAEKHHVSLATVNRAFGLLHDRGLVYgKqGKGV 68
                6789*************************96424435 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   9.6e-06     0.016      19      60 .]      27      68 ..      23      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.6e-06
                    HHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTEE CS
  Fe_dep_repress 19 ekkvvktkdlaerLnvspssVsemlkkLekdGyveyekykgl 60
                     +k ++t++lae   vs ++V      L++ G+v  ++ kg+
      KIR65867.1 27 HEKLPSTAELAEKHHVSLATVNRAFGLLHDRGLVYGKQGKGV 68
                    57899*****************************98888876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     2e-05     0.032      19      47 ..      32      60 ..      24      61 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
      HTH_24 19 sqreLAerlglSpstvnrrlkrLeeeGlI 47
                s +eLAe+ ++S++tvnr    L + Gl+
  KIR65867.1 32 STAELAEKHHVSLATVNRAFGLLHDRGLV 60
                679********************999998 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.1e-05     0.035      25      58 ..      33      66 ..      25      73 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.1e-05
                HCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 25 adeiaeelgvprskvYevLrsLedkGlVerekgr 58
                + e+ae+  v+ ++v+++   L d+GlV+ ++g+
  KIR65867.1 33 TAELAEKHHVSLATVNRAFGLLHDRGLVYGKQGK 66
                579*************************998886 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.2e-05     0.053       4      37 ..      28      61 ..      25      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-05
      HTH_41  4 dRlktIeelakeleLSvGlvQkALklLeddkais 37
                ++l++  ela++  +S  +v  A  lL d + ++
  KIR65867.1 28 EKLPSTAELAEKHHVSLATVNRAFGLLHDRGLVY 61
                89*****************************997 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.8e-05     0.062      15      48 ..      27      61 ..      23      66 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.8e-05
                STT.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR 15 qgp.lsvseLakklgvskstvtrvldrLekkGlie 48
                ++  +s +eLa+k +vs +tv r+   L ++Gl++
  KIR65867.1 27 HEKlPSTAELAEKHHVSLATVNRAFGLLHDRGLVY 61
                55524556***********************9997 PP

>> RepL  Firmicute plasmid replication protein (RepL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.1e-05       0.1      78     114 ..      33      70 ..      22      74 .] 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.1e-05
        RepL  78 nRelaeetgislktvsetlkileeanilk.kkanGvlv 114
                 + elae+  +sl+tv++ +  l++ +++  k+ +Gv+v
  KIR65867.1  33 TAELAEKHHVSLATVNRAFGLLHDRGLVYgKQGKGVFV 70 
                 569*********************99885377889987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 548.16
//
Query:       KIR65868.1  [L=75]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-16   57.9   0.1    6.3e-16   57.8   0.1    1.0  1  GntR       Bacterial regulatory proteins, gntR family
      8e-05   22.3   0.0    0.00011   21.8   0.0    1.3  1  HTH_41     Helix-turn-helix domain
     0.0066   16.2   0.0     0.0094   15.7   0.0    1.3  1  HTH_psq    helix-turn-helix, Psq domain
     0.0076   16.2   0.2      0.048   13.6   0.1    1.9  2  HTH_Crp_2  Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.014   15.3   0.0    1.2  1  HTH_36     Helix-turn-helix domain
      0.023   14.5   0.1      0.064   13.1   0.0    1.7  2  HTH_23     Homeodomain-like domain
      0.027   14.4   0.1      0.055   13.4   0.1    1.6  2  HTH_11     HTH domain


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.1   2.5e-19   6.3e-16       2      64 .]       7      69 ..       6      69 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 2.5e-19
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                ++q+++ L+++I++ e++pG+kLPs reLa+ + Vs +t+++AL     +gl + r g+G++V
  KIR65868.1  7 SRQIADDLTARINAREYQPGTKLPSLRELADLYSVSVSTIQRALELTRDRGLTVGRAGSGVYV 69
                589**********************************************************98 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   4.3e-08   0.00011       3      34 ..      26      57 ..      24      66 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.3e-08
      HTH_41  3 GdRlktIeelakeleLSvGlvQkALklLeddk 34
                G +l++  ela  +++Sv ++Q AL+l  d +
  KIR65868.1 26 GTKLPSLRELADLYSVSVSTIQRALELTRDRG 57
                99************************988876 PP

>> HTH_psq  helix-turn-helix, Psq domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.7e-06    0.0094      18      38 ..      31      51 ..      21      57 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.7e-06
     HTH_psq 18 SirkAArkYgiPrsTLwrrkr 38
                S+r++A++Y ++ sT++r+++
  KIR65868.1 31 SLRELADLYSVSVSTIQRALE 51
                99***************9987 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.15   3.8e+02      20      31 ..       3      14 ..       1      20 [. 0.82
   2 !   13.6   0.1   1.9e-05     0.048      23      61 ..      31      71 ..      16      73 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.15
                EEHHHHHHHHHT CS
   HTH_Crp_2 20 lpltqeelAsml 31
                +p++ +++A+ l
  KIR65868.1  3 IPMSSRQIADDL 14
                89*******966 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.9e-05
                HHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.E.TEEEEES- CS
   HTH_Crp_2 23 tqeelAsmlGltretvsrilseLkreglis.r.grririld 61
                + +elA++  ++ +t+ r+l   +++gl   r g ++ + d
  KIR65868.1 31 SLRELADLYSVSVSTIQRALELTRDRGLTVgRaGSGVYVAD 71
                668*************************9955333377766 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   5.5e-06     0.014      25      48 ..      29      52 ..      20      58 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.5e-06
      HTH_36 25 fpsqetlakrlglsknTvsraike 48
                 ps + la ++ +s++T++ra+ +
  KIR65868.1 29 LPSLRELADLYSVSVSTIQRALEL 52
                69*******************987 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.97   2.5e+03      19      27 ..       6      14 ..       5      14 .. 0.76
   2 ?   13.1   0.0   2.5e-05     0.064      19      45 ..      31      57 ..      31      60 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.97
      HTH_23 19 svreIAreL 27
                s r+IA+ L
  KIR65868.1  6 SSRQIADDL 14
                679999965 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.5e-05
      HTH_23 19 svreIAreLgvsrrTvyrwlkryreeG 45
                s re A+++ vs +T++r l+  r  G
  KIR65868.1 31 SLRELADLYSVSVSTIQRALELTRDRG 57
                679***************998765555 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.8   4.7e+03      16      25 ..       5      14 ..       4      15 .. 0.75
   2 ?   13.4   0.1   2.1e-05     0.055      17      41 ..      31      55 ..      27      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.8
      HTH_11 16 isgeeLAeeL 25
                +s+ ++A+ L
  KIR65868.1  5 MSSRQIADDL 14
                6888899876 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.1e-05
      HTH_11 17 sgeeLAeeLnvSrrtvrrdIkaLee 41
                s  eLA+  +vS +t++r ++  ++
  KIR65868.1 31 SLRELADLYSVSVSTIQRALELTRD 55
                678***************9987555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.48
# Mc/sec: 466.76
//
Query:       KIR65869.1  [L=255]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-21   75.0   0.0    6.8e-21   74.6   0.0    1.2  1  TetR_C_1  Tetracyclin repressor-like, C-terminal domain
    1.7e-07   30.9   0.0    5.4e-07   29.3   0.0    1.9  1  TetR_N    Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> TetR_C_1  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.0   7.6e-25   6.8e-21       6     144 ..     100     248 ..      94     249 .. 0.92

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 7.6e-25
                 S-HHHHHHHHHHHHHHHHHTSTTHHHHHHT-SS--HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHH........HHHHHHHSTT--STT-H CS
    TetR_C_1   6 edWrerlrelarslrrallrhrdlarlfagtprlspnelrgmErlLrllrdaGlsdedavyalslisnFvvGav........leeqsgledaeeraeqe 96 
                  +Wr+rl++ ar+  r++++h++l+r   ++p+l+pn l+ ++  L  ++d Gl+d +   +l+l++  v  a+        le++ g +d++++++ +
  KIR65869.1 100 GGWRARLEQIARENLRLYRAHPWLLRAETSRPVLGPNLLAKYDYELGAVADIGLDDVEMDAVLTLVLGHVRSAAraeldvvnLERETGMTDGQWWQSHA 198
                 38********************************************************************9999************************* PP

                 HHHHHH--TTT-HHHHHHHH...HH..T---HHHHHHHHHHHHHHHHHHH CS
    TetR_C_1  97 avleealepgeypllaealelaeil..tsedsdaaFefGLellldGleal 144
                 + le+ +++g+yp  a++  +a  +  ++ + + aFefGL+++ldG+ ++
  KIR65869.1 199 PWLERFMKSGSYPTAARVGTAAGEAhgAAYGPEHAFEFGLQRVLDGISVV 248
                 **************9999986654411345889**************875 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0     6e-11   5.4e-07       1      45 [.      38      82 ..      38      84 .. 0.97

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 6e-11
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLle 45
                I+ aA e    +G+da+t+r++ +++G +  ++Y y p+K+eLl+
  KIR65869.1 38 IVRAAIEIADAEGIDALTMRRVSEALGAGTMSVYTYVPGKAELLD 82
                899****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1667.82
//
Query:       KIR65870.1  [L=284]
Description: streptogrisin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-07   28.8   7.2    3.1e-06   27.1   7.2    1.8  1  Trypsin          Trypsin
    0.00016   22.6  10.1     0.0022   18.9  10.1    2.1  1  Trypsin_2        Trypsin-like peptidase domain
     0.0044   17.0   6.6     0.0044   17.0   6.6    2.6  2  Pro_Al_protease  Alpha-lytic protease prodomain
  ------ inclusion threshold ------
        5.8    4.5   5.5          9    3.9   5.5    1.2  1  Herpes_UL32      Herpesvirus large structural phosphoprotein 


Domain annotation for each model (and alignments):
>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   7.2     7e-10   3.1e-06      34     215 ..     119     273 ..      97     278 .. 0.66

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 7e-10
                 TTEEEEEGGGTTT.GGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSS.STSBSSBHCCBBCS..TTHTT.STTTEEEEEES CS
     Trypsin  34 enwvlTAaHCvsn.asdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkep.vklgdtvrpiclpa..asssl.pvgttclvsGw 127
                 +++ +TA+HC +  ++ +   +g++ l ++ g+   ++                nD+++++ ++  v   ++v+++      ++  +  vg  ++ sG 
  KIR65870.1 119 TYYFVTAGHCTTTaTTWYADSAGTSVLGSRAGS--SFP---------------GNDYGIVRYTSTtVAHPSAVHTYPGTLtvTGTAApVVGMAVCRSGA 200
                 56899*****99833333333333333333332..222...............3566666666663222222222222112233322268888999999 PP

                 SBSSTSSBSSBEEEEEEEEEEHH.HHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTT.EEEEEEEEE.SSSSCTTSEEEEEEGG CS
     Trypsin 128 grtkekgksdtlqevevpvvsre.tcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdg.elvGivswg.kgcakgnrpgvytkvs 215
                 ++  ++g   +++ ++ +v   + +++      + ++ +ca+          GDSGGPl +  +  +vGi+s+g  +c++g++ + y+++ 
  KIR65870.1 201 TTGVRCG---SITGLNATVNYAQgSVSG-----LIRTNICAEP---------GDSGGPLYVAATgRIVGILSGGsGNCTTGGT-SYYQPIG 273
                 9988888...555555555433325555.....88999*****.........*******9999999********999999987.8888875 PP

>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9  10.1   4.9e-07    0.0022       6     150 .]     116     253 ..      20     253 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.9e-07
   Trypsin_2   6 vgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadp.elDlAllkvssderaglpplplgpsealkggepvyvvGyplggeksg.sv 102
                  gs+++ +T+ H+ + a++  +           + g+ v ++  +++  + D+ +++ +s++ a   ++   p + +++g+ + vvG   ++ + +  v
  KIR65870.1 116 SGSTYYFVTAGHCTTTATTWYA----------DSAGTSVLGSRAGSSFpGNDYGIVRYTSTTVAHPSAVHTYPGTLTVTGTAAPVVGMAVCRSGATtGV 204
                 4566799999999999999888..........8888888888888886355*******66666666666666666777777999999964444444589 PP

   Trypsin_2 103 ssGivsgvvesesaasgegesflqtdaatspGsSGGplfd.sdGrvvGl 150
                   G+++g++ + ++a+g+ +++++t++   pG SGGpl   ++Gr+vG+
  KIR65870.1 205 RCGSITGLNATVNYAQGSVSGLIRTNICAEPGDSGGPLYVaATGRIVGI 253
                 99********999**************************88*******8 PP

>> Pro_Al_protease  Alpha-lytic protease prodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   6.6   9.8e-07    0.0044      18      54 ..      39      75 ..      23      81 .. 0.87
   2 ?    0.7   0.1      0.12   5.4e+02      22      32 ..     130     140 ..     124     145 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.8e-07
  Pro_Al_protease 18 araaaavtaWyVDvatNkVVVtadsgvtaa.aealaaa 54
                     a+a +a+taW VD+ t + +V ad++v+++  +al a+
       KIR65870.1 39 ADA-PAGTAWTVDPVTGRTTVAADDTVSDRqLAALRAR 75
                     444.69************************98888765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.12
  Pro_Al_protease  22 aavtaWyVDva 32 
                      +++t Wy D a
       KIR65870.1 130 TTATTWYADSA 140
                      5789*****86 PP

>> Herpes_UL32  Herpesvirus large structural phosphoprotein UL32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   5.5     0.002         9     922     991 ..     150     216 ..     137     239 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.002
  Herpes_UL32 922 sgsapgrlsgssraasttptypavttvyppsstakssvsnappvaspsilkpgasaalqsrrstgiaavg 991
                    s pg   g  r +stt ++p+    yp + t       a pv   ++ + ga++ +++   tg+ a  
   KIR65870.1 150 GSSFPGNDYGIVRYTSTTVAHPSAVHTYPGTLTVT---GTAAPVVGMAVCRSGATTGVRCGSITGLNATV 216
                  45789************************998875...56899*****************9999997643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2156.44
//
Query:       KIR65871.1  [L=320]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-24   86.1   0.0    3.5e-23   82.2   0.0    2.3  2  MEDS         MEDS: MEthanogen/methylotroph, DcmR Sensory doma
    9.7e-14   51.4   0.0    1.6e-13   50.7   0.0    1.3  1  HATPase_c_2  Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> MEDS  MEDS: MEthanogen/methylotroph, DcmR Sensory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.0   3.9e-27   3.5e-23       2     161 .]      14     157 ..      13     157 .. 0.93
   2 ?    1.3   0.0      0.03   2.7e+02       8      52 ..     222     266 ..     219     279 .. 0.82

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 3.9e-27
        MEDS   2 Hvclfyedeeellealvpfikaglargekvlyvasastldelrealrkagldvdaalesgqleildaeetylrgggfdpermlealrralakaladgya 100
                 H ++ y ++eell+++vpf+  g+a+ge+ ++ ++a++ +++r al  +g  v         ++l+ +++y      +p+++++ +r+ la ++adg +
  KIR65871.1  14 HEAVCYASDEELLTVAVPFLLGGVAAGEPTVVSLGAHNAALVRGAL-PGGCGV---------TFLPGDDVY-----ARPAAAIRSYREMLAGHVADGAR 97 
                 999*******************************************.557744.........445556677.....78999****************** PP

        MEDS 101 glrvigemtwalrspaereelleyEallneliadepvtalClYdrrrfsaevladvlrtHp 161
                 ++r++ge          ++ +++yE+  n+ +++ p++ +C+Yd+r  +a+vl+dv+rtHp
  KIR65871.1  98 QIRIVGELPPSALGV-TWDWWARYESATNHAYDEFPLWSMCAYDTRSTPASVLRDVARTHP 157
                 *********888887.9*******************************************8 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.03
        MEDS   8 edeeellealvpfikaglargekvlyvasastldelrealrkagl 52 
                 +d e+l+ a+++ ++++l++g++ +++  +   d+l + ++++g+
  KIR65871.1 222 DDVEDLVVAVSETVTNALRHGQPPVCLRLWVGPDRLVATVSDGGD 266
                 678999****************88887777777777777777766 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   1.8e-17   1.6e-13       9     124 ..     205     312 ..     198     313 .. 0.91

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 1.8e-17
  HATPase_c_2   9 rtvrevaeavlrraglseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpg.fdpetlpdpteeepkeslkegGrGlali 105
                  +++r +++av    +l+ ++++++ +av+E +tNa +h+++     pv +rl++++++l+++v+D G g  dp ++  p+     +++ egG+Gl + 
   KIR65871.1 205 AQARAAVHAV-DGGRLPVDDVEDLVVAVSETVTNALRHGQP-----PVCLRLWVGPDRLVATVSDGGDGpKDPFAGLLPA-----GDGTEGGLGLWIA 291
                  5688888888.679**************************8.....9**********************99999887773.....99*********** PP

  HATPase_c_2 106 kglvDevey..dgegnvvtms 124
                  ++ +++v+   +++g +++++
   KIR65871.1 292 HQSCNHVSAhrGPGGYTLRLT 312
                  *******99889999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2394.00
//
Query:       KIR65872.1  [L=186]
Description: NADPH-dependent FMN reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-37  127.4   0.1    5.3e-37  127.0   0.1    1.2  1  FMN_red       NADPH-dependent FMN reductase
    7.6e-11   42.1   0.0    1.2e-10   41.5   0.0    1.3  1  Flavodoxin_2  Flavodoxin-like fold


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.0   0.1   5.9e-41   5.3e-37       2     151 ..       3     145 ..       2     149 .. 0.93

  Alignments for each domain:
  == domain 1  score: 127.0 bits;  conditional E-value: 5.9e-41
                 EEEEEES--STT-HHHHHHHHHHCCT-T..T-CEEEEETTTS.--..---HCHGHT..CGGSHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHC CS
     FMN_red   2 kilvisGSlrkgsntrklaewaaealkea.gaevelidladlilpcalcdkdlese..gqtsddvaellekiaaadaliivtPeYngsysgllKnalDr 97 
                 +i v++GS+r+g++ +++a w+ + ++++ +a+++l+dlad++lp   ++  l+ +   + +++v+++ ++iaa da ++vtPeYn+s++g+lK a+D+
  KIR65872.1   3 RIGVVVGSTRPGRKAEAVAAWVRDIAAQRgDATADLVDLADHALP--HLNTPLPPSmaPSGDPAVRRWAARIAAFDAYVFVTPEYNHSVPGVLKDAIDY 99 
                 89************************99956**************..777777766788999************************************* PP

                 HT-.SSCHCCTT-EEEEEEE-SSTTTTHHHHHHHHHHHHHTT-EEEECSEEEET CS
     FMN_red  98 lsrtrgkkelrgKpvalvavgggrrgglraeeqlrqvlaelgaivvpraavavg 151
                 l     ++e+r+K+++lv++g  ++gg ra+e+lr vl+ +++  v++ +v+++
  KIR65872.1 100 L-----YREWRNKAAGLVSYG--VHGGTRAAEHLRLVLSQVEVADVRS-QVSLS 145
                 *.....9***********887..79**************999999999.77765 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   1.3e-14   1.2e-10       3     106 ..       4     103 ..       3     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1.3e-14
                   EEEEE--TTGGCCHHHCHHHHHHHHHCCCTT.TEEEEEEHHCCT-----CCCCHCCHHHHTTCHHHHHHHHHHHHCSSEEEEEEE-BTTB--HHHHH CS
  Flavodoxin_2   3 iLiinahprpeksfssalaqafvealekagp.hevtvrdLyadflpvlttrdlaaklayeekpadveseqiekllaadaivlqfPlwwfgvPailKg 98 
                   i +++++ rp   ++ ++ +a+v+ ++++   ++ + +dL++  lp+l+t      + ++ + + v++ + ++++a da+v+++P ++ +vP +lK 
    KIR65872.1   4 IGVVVGSTRP--GRKAEAVAAWVRDIAAQRGdATADLVDLADHALPHLNTPLPP--SMAPSGDPAVRRWA-ARIAAFDAYVFVTPEYNHSVPGVLKD 95 
                   568999***9..56678888888888888888*****************95554..22223257888888.************************** PP

                   HHHHHS-T CS
  Flavodoxin_2  99 wiDrvlta 106
                    iD+ ++ 
    KIR65872.1  96 AIDYLYRE 103
                   ***99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1305.54
//
Query:       KIR65873.1  [L=325]
Description: kanamycin kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-36  126.3   0.0    1.1e-35  123.5   0.0    1.9  1  ROK        ROK family
  ------ inclusion threshold ------
       0.28   11.3   3.1         20    5.4   0.2    2.7  2  Attacin_N  Attacin, N-terminal region


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.0   1.3e-39   1.1e-35      38     293 ..      70     320 ..      12     321 .. 0.86

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 1.3e-39
                 HHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCCCCTTHHHHHHHHH.TS-EEEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEE CS
         ROK  38 tlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitwenfdlvekleerl.nvpvevenDvnaaalaEavfgaskdvenviyvtvgtGvG 135
                 +l da+++l +e       ++avg+++pG   ++ + +v + ++ w+  +++e+l   + +  + ++ D   aalaEa    + ++++v+y+ vgtGvG
  KIR65873.1  70 ALADAVGALRAESGL---RFAAVGVAMPGTTGPTGRVVVWPGRPSWAGLPFDETLRGLFpGSRTAWADDGDLAALAEAR---HVGAQDVVYLGVGTGVG 162
                 344444444444433...456**********99999999999****************967899*************99...89999************ PP

                 EEEEETTEEE-..-TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHHCHTC.CGTTS-HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHH CS
         ROK 136 aGviingklit..GrnGvagelGHiqldpegekcgCGnqgClEtlasgralekraqq.kgekleakeiiklaekgdevaeevverlaeylakaiadlin 231
                 +Gv+++g+++   Gr+  ++e+GH+ +d +g++c CG++gCl ++asg+a  +ra+  +g ++  +e+    e+  + a ++v+  + +la+a++ l  
  KIR65873.1 163 GGVVLGGRPLPapGRG--SPEVGHLVVDVDGPRCDCGRHGCLQAVASGPATLRRAGAaRGGEVGFAELRDGLEQDRPWAHDAVRPAGTALAAAVVSLGE 259
                 ********87522666..********************************999999879999************************************* PP

                 HH--SEEEEEHCCCT.STTHHHHHHHHHHHCCTTTTCCCT-EEEE-S-STTHHHHHHHHHHCC CS
         ROK 232 lfdpqaivlgGgvse.adklleairklvkkylnkklevpvveivaaklgdkagllGaaaLake 293
                 l+dp + vlgGg  +  +++++ + ++v ++++ + ++p   ++aa lg  ++l Ga+aLa++
  KIR65873.1 260 LLDPAVAVLGGGFAAgLPGFVDLVGREVIRLARPGRPAPA--VRAAALGGLSSLHGAVALARD 320
                 ************987357788**************99999..9*****************986 PP

>> Attacin_N  Attacin, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2    0.0023        21      17      46 ..      13      47 ..       3      54 .. 0.81
   2 ?    5.4   0.2    0.0022        20       7      36 ..     243     275 ..     240     277 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0023
   Attacin_N 17 lkltlgtpdhnvlaqvFAagntq.....agpvtsG 46
                l++ +g+ +  ++a  FAag+++     +  v++G
  KIR65873.1 13 LGVDIGGTKVALRAEEFAAGPAEgahagEVRVATG 47
                57889*****************9877665555555 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0022
   Attacin_N   7 snPtGgAdarlklt...lgtpdhnvlaqvFAag 36 
                 + P+G+A a++ ++   l +p   vl++ FAag
  KIR65873.1 243 VRPAGTALAAAVVSlgeLLDPAVAVLGGGFAAG 275
                 569******99999445558***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2339.59
//
Query:       KIR65874.1  [L=117]
Description: DoxX family protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-20   72.0  14.9    4.3e-20   71.7  14.9    1.1  1  DoxX_2    DoxX-like family
    3.7e-06   27.4   9.3    3.7e-06   27.4   9.3    1.9  2  DoxX      DoxX
  ------ inclusion threshold ------
      0.059   13.5   3.3      0.097   12.8   3.0    1.5  1  DUF3742   Protein of unknown function (DUF3742)


Domain annotation for each model (and alignments):
>> DoxX_2  DoxX-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7  14.9   7.2e-24   4.3e-20       2     102 ..       8     108 ..       7     111 .. 0.93

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 7.2e-24
      DoxX_2   2 ltvllalffllsGvakllraeevvakfaqlgfpssfvrllGvvellgalgLllplvtaprltplAavglallmvgAiathlrrgdp.kavalpavllal 99 
                 l+++la++f++ +v kl+  ++  + +++lg+++++ r++Gv+el++++gLl++l++ p  +++Aavgl+ lm+gA+  hlr++dp + +++p+++ + 
  KIR65874.1   8 LSIILAAVFMATAVQKLVGERKTRERMDHLGVSAGLTRVIGVLELAAVVGLLVGLFW-PLAGLAAAVGLVPLMIGAAGYHLRARDPfAVTVMPIAFGLA 105
                 899***************************************************855.889*************************7678899988887 PP

      DoxX_2 100 ala 102
                 a+a
  KIR65874.1 106 AAA 108
                 765 PP

>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   9.3   6.1e-10   3.7e-06       7      80 ..      10      79 ..       6      85 .. 0.93
   2 ?   -0.2   0.4      0.27   1.6e+03      67      74 ..     104     111 ..      89     115 .. 0.57

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 6.1e-10
        DoxX  7 lllgvlfiahGlqkltgfglegtaaslaalglpppellaylaalvElvgglllllGlltRlaAlalavtllvat 80
                ++l+++f+a+ +qkl   g   t + + +lg+   + l ++++++El++ ++ll+Gl+ +la la av l++++
  KIR65874.1 10 IILAAVFMATAVQKLV--GERKTRERMDHLGV--SAGLTRVIGVLELAAVVGLLVGLFWPLAGLAAAVGLVPLM 79
                89**************..999*******9999..9*******************************99998876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.27
        DoxX  67 laAlalav 74 
                 laA+alav
  KIR65874.1 104 LAAAALAV 111
                 34444444 PP

>> DUF3742  Protein of unknown function (DUF3742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   1.6e-05     0.097      25      75 ..      24      73 ..      13      91 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.6e-05
     DUF3742 25 lrlerraaswlvakGvpaavatavlwvvklavlGvllyvafWlalllvvvv 75
                l  er+  ++++  Gv+a+  +++ ++  +av+G+l+   fW +  l+++v
  KIR65874.1 24 LVGERKTRERMDHLGVSAGLTRVIGVLELAAVVGLLV-GLFWPLAGLAAAV 73
                5689****************99999999999**9765.899*999776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1030.72
//
Query:       KIR65875.1  [L=143]
Description: 3-dehydroquinate dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-44  150.9   0.0    1.8e-44  150.8   0.0    1.0  1  DHquinase_II  Dehydroquinase class II
  ------ inclusion threshold ------
       0.25   11.4   0.0       0.38   10.8   0.0    1.2  1  DUF727        Protein of unknown function (DUF727)


Domain annotation for each model (and alignments):
>> DHquinase_II  Dehydroquinase class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.8   0.0     2e-48   1.8e-44       2     137 ..       4     138 ..       3     139 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.8 bits;  conditional E-value: 2e-48
                   EEEEE-TTGGGTTTSTCCCC-SS-HHHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHHCTTT.TEEEEE-GGGGGT-HHHHHHHHTSSS-EEEEE CS
  DHquinase_II   2 ilvlnGpNlnllgkrepeiygsetledieeelkekaeelgvelevfqsnhEgelidriqeakekvdgiviNpgaythtSvalrdalaaveipvvEvh 98 
                   +l+lnGpNl +lg+r+peiyg++tl+die+++ e++++ g+++ ++q ++Eg+l+ ++qe   ++ g ++Npga+    ++lrdala++  p++Evh
    KIR65875.1   4 VLLLNGPNLGILGRRQPEIYGTDTLADIERAVGEEVAARGWNVVAVQHDCEGALVRTVQEH-YDTVGAIVNPGALMIAGWSLRDALANYPRPWMEVH 99 
                   89*********************************************************95.56679999*************************** PP

                   SS-GGGS-GGGG--SSGGGSSEEEESSTTHHHHHHHHHH CS
  DHquinase_II  99 lsnvhaReefrhksvlsdvakgviaGlglegYelaleal 137
                   lsnv+aRe+frh svl++ a+gvi+Glg  gY+la +al
    KIR65875.1 100 LSNVWARESFRHDSVLAPLASGVIVGLGPLGYRLAARAL 138
                   ***********************************9987 PP

>> DUF727  Protein of unknown function (DUF727)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.2e-05      0.38      47      84 ..      38      73 ..      29      75 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.2e-05
      DUF727 47 elsakGfrvvsskydeveeeeekedeekyfetlyaLLd 84
                e++a+G++vv  ++d+    +  +  +++++t+ a+++
  KIR65875.1 38 EVAARGWNVVAVQHDCE--GALVRTVQEHYDTVGAIVN 73
                6789************9..7777888899***998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1082.03
//
Query:       KIR65876.1  [L=387]
Description: 3-amino-5-hydroxybenzoic acid synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.3e-114  382.5   0.0   2.8e-114  382.2   0.0    1.0  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    1.9e-08   33.9   0.0    2.7e-08   33.4   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
      0.011   14.3   0.0      0.017   13.7   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.2   0.0  4.6e-118  2.8e-114       4     355 ..      20     375 ..      16     381 .. 0.95

  Alignments for each domain:
  == domain 1  score: 382.2 bits;  conditional E-value: 4.6e-118
                      HHHHHHHHHHHTSS-SSS.SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTT CS
  DegT_DnrJ_EryC1   4 eeeleaveevlksgwlts.gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdt 96 
                      ee+   ++++ +++w+++ g+ev+ FE++f ay+g+ ha+av++Gt+Al++aL++lgvgpg+eVIvp++tF+++  a+++lga++v+vDvd dt
       KIR65876.1  20 EERAGLIRALEQGQWWRMgGSEVDTFEAEFGAYHGTPHALAVTNGTHALEVALEVLGVGPGTEVIVPAFTFISSSLAAQRLGAVAVPVDVDLDT 113
                      455555666667779999**************************************************************************** PP

                      SSB-GGGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS-SSS-EEEEESTHHH CS
  DegT_DnrJ_EryC1  97 ynidpaaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnlttGeGGavvtndeel 190
                      y++dpaa++aa+t rtk I+pVh++Gq+admdal++iaa+ g+ +++DaAhA+Ga+++g+kvG+lg++a+fSF++ K +t+GeGGav++ dee+
       KIR65876.1 114 YCVDPAAVAAAVTDRTKVIMPVHMAGQFADMDALDKIAADAGVALLQDAAHAHGAQWQGRKVGELGSIAAFSFQNGKLMTAGEGGAVLFPDEET 207
                      ********************************************************************************************** PP

                      HHHHHHHHBTTCECCTCSSCECCSS---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSS...S.EEESCEEE CS
  DegT_DnrJ_EryC1 191 aekarvlrnhGlkrkaekryvgevelGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttpketk...k.hawhlyav 280
                       e+a + +++G+  + ++ y +++  G+nyr+ e+ AA+++aqL+rl  +++ R++ + l+  +Lae++g++++t +++t+   + +a+++++ 
       KIR65876.1 208 RERAFLVHSCGRP-RTDRDYLHRT-TGSNYRMGEFTAAVLRAQLARLAGQIDVREQRWPLLAGLLAEIPGVVPQTIDPRTDrnpHyMAMFRIPG 299
                      ***********99.69999*****.******************************************************999985699****** PP

                      EEHCCHHHCHHHHHHHHHHCCEE-B-SG.SCHGGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHHHHHH CS
  DegT_DnrJ_EryC1 281 lveeeaevkrdelvealkeegigtrvhy.pnplhrqpvyaerkeeasgdlpnaerlaervlsLplypelteedvdr 355
                      +++e++ + +d+l+++   +++++r++y  + +++  +++e++e+ ++++pn e++++++++L+++  l +e++ +
       KIR65876.1 300 ITPERRRAVVDALIARGVPAFVAFRAIYrCEGFWKAGAPDETVEQIAARCPNVEQIHSDCVWLHHRTLLGTEQQMH 375
                      *****9999*******************989***************************************998765 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   4.6e-12   2.7e-08      31     194 ..      28     168 ..       2     183 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 4.6e-12
                    HHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETT CS
  Aminotran_1_2  31 alaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplysee 126
                    al++g++ + g ++  +++e +   ++g       ++  a+ v++G++al +al+ l  + pg+e++vp+ t+ s + +++  g+  v++   + +
     KIR65876.1  28 ALEQGQWWRMGGSE-VDTFEAEFGAYHG-------TPH-ALAVTNGTHALEVALEVLG-VGPGTEVIVPAFTFISSSLAAQRLGAVAVPVD-VDLD 112
                    77788888888888.8999999999***.......566.*******************.9*******************************.559* PP

                    TTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCB CS
  Aminotran_1_2 127 dfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfv 194
                    ++ +d  a+ +a+++      +tkvi    p ++ G+ a+ + l k+   a   ++ l+ D a+a+++
     KIR65876.1 113 TYCVDPAAVAAAVTD------RTKVIM---PVHMAGQFADMDALDKI---AADAGVALLQDAAHAHGA 168
                    ***************......9***97...9****************...9999************97 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.9e-06     0.017      46     180 ..      34     168 ..      17     177 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.9e-06
                      BTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTT.S-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST......TSHHHHHH CS
  Cys_Met_Meta_PP  46 YsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailal.lkaGdeivvsddlYggtqrllkkvlkklgievkfvdt......sdleelek 132
                      + R+g   ++++e++  a +g+ +alav+ G+ A+++a+  l +  G+e++v    + +++   ++ l  + + v+   +       d++++++
       KIR65876.1  34 WWRMGGSEVDTFEAEFGAYHGTPHALAVTNGTHALEVALEVLgVGPGTEVIVPAFTFISSSLAAQR-LGAVAVPVD---VdldtycVDPAAVAA 123
                      669999999**************************99988875678*******9999876544333.333333332...2112234699***** PP

                      HCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTT CS
  Cys_Met_Meta_PP 133 aikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspl 180
                      a++++tk++    p     + +D+ ++ k+a +agv ++ D++ a ++
       KIR65876.1 124 AVTDRTKVIM---PVHMAGQFADMDALDKIAADAGVALLQDAAHAHGA 168
                      ********96...88888899999999999999999999998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3001.36
//
Query:       KIR65877.1  [L=395]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-23   81.7   0.1    1.3e-22   80.8   0.1    1.5  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
    1.6e-06   28.1   0.0      3e-06   27.2   0.0    1.4  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 
    8.1e-06   26.3   0.0    2.2e-05   24.9   0.0    1.7  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
  ------ inclusion threshold ------
      0.028   15.1   0.0       0.19   12.4   0.0    2.3  3  CoA_binding     CoA binding domain


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.1     3e-26   1.3e-22       1     116 [.      19     134 ..      19     138 .. 0.95

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 3e-26
                   EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE.EESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS- CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve.aysdleelladpeidavivatpngtheelakaaleagkhvllEKPla 96 
                   +rva++G+G++g++ + p  ++++  ev+al+dp+++  ea++++  v+ ay+d+++l+a  ++d+v+va+pn++h+++a ++l++g+ v+lEKP++
    KIR65877.1  19 IRVAVVGLGWAGREIWLPRLAAHPAFEVTALVDPQPAVREAARDTHAVPfAYADVDDLPA-GAADLVVVAVPNHLHAAVAARLLRRGVPVFLEKPVC 114
                   69*************99999999*************************************.67********************************** PP

                   SSHHHHHHHHHHHHHHTS-E CS
  GFO_IDH_MocA  97 ttveeakelvelaekkgklv 116
                   ++ +ea  l+++++  g ++
    KIR65877.1 115 LSSAEAALLADAERAGGAVL 134
                   *********99999888766 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   6.7e-10     3e-06       8      69 ..     155     216 ..     152     249 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 6.7e-10
                     TTSSEEEEEEEEECBEEECHHHHCCGGSH.HCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE CS
  GFO_IDH_MocA_C   8 klGevvsvdvwtldtragaeakkrwkrrk.kksgGvlgdlgiHdiDllqwLfGqppsvvaalg 69 
                     +lG++++vdv +++ r  ++a  +  r +   +gG+l+dlg H +D +  L+G+  + + a g
      KIR65877.1 155 ELGPIRHVDVAWVRARGVPDAGGWFTR-RdLSGGGALVDLGWHLLDTVLPLLGPATRITHAVG 216
                     69******9977777666666655555.55************************988777775 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   4.9e-09   2.2e-05       1      94 [.      20     108 ..      20     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 4.9e-09
                     EEEEETTTSHHHHHH.HHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTSEEE CS
  Semialdhyde_dh   1 kvaivGatGyvGqel.lrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapklaeagvkvi 94 
                     +va+vG  G  G+e+ l +L+ hp +e+++l+  +  a ++ a+     ++   + + dvd+    ++d+v+ a+p+  ++++a++l+ +gv v+
      KIR65877.1  20 RVAVVG-LGWAGREIwLPRLAAHPAFEVTALVDPQP-AVREAARD----THAVPFAYADVDDLPAGAADLVVVAVPNHLHAAVAARLLRRGVPVF 108
                     79****.9*******99*************999999.44444444....3457777777777888***************************986 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.2e-05      0.19       4      90 ..      19     108 ..      17     110 .. 0.90
   2 ?   -3.3   0.0       3.3   1.5e+04      63      83 ..     211     231 ..     205     232 .. 0.73
   3 ?   -1.1   0.0      0.69   3.1e+03       3      18 ..     288     301 ..     287     313 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.2e-05
                  EEEEEETTTSHHHHHH.HHHHHHHHECEEEEEEC-TT..TTTCEETTEE.EESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-SEE CS
  CoA_binding   4 tkviviGagglgiagl.yhfkeklkygikavfgvnpr..kvgtevlglp.vyksvdeleektevdvavitvPaesaqeavdelveagikgi 90 
                   +v+v+G g  g+++   + + +  ++++a+++ +p    ++++ + +p +y +vd+l++   +d  v++vP+   ++++ +l++ g+++ 
   KIR65877.1  19 IRVAVVGLGWAGREIWlPRLAAHPAFEVTALVDPQPAvrEAARDTHAVPfAYADVDDLPAG-AADLVVVAVPNHLHAAVAARLLRRGVPVF 108
                  589*************99*****************986677777777775899******99.9**********************999875 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.3
                  TTEEEEES-HHHHHHHHHHHH CS
  CoA_binding  63 vdvavitvPaesaqeavdelv 83 
                  ++ av  v+a+++ +++  +v
   KIR65877.1 211 ITHAVGSVSADFVNDTAAHAV 231
                  566777888888888887665 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.69
                  TEEEEEETTTSHHHHH CS
  CoA_binding   3 dtkviviGagglgiag 18 
                  +t + v+Ga g+  a 
   KIR65877.1 288 RTTITVQGAAGT--AT 301
                  58999****999..44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3158.81
//
Query:       KIR65878.1  [L=232]
Description: phosphoglycolate phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-31  108.9   0.0    3.5e-31  108.6   0.0    1.1  1  HAD_2           Haloacid dehalogenase-like hydrolase
    1.2e-20   74.8   0.0    6.5e-20   72.3   0.0    1.9  1  Hydrolase       haloacid dehalogenase-like hydrolase
    4.2e-08   33.8   0.1      1e-07   32.6   0.0    1.6  2  HAD             haloacid dehalogenase-like hydrolase
    6.6e-08   32.5   0.4    1.2e-07   31.6   0.4    1.5  1  Hydrolase_like  HAD-hyrolase-like
    0.00088   19.4   0.0      0.073   13.2   0.0    2.9  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.053   13.3   0.0        1.1    9.0   0.0    2.5  3  Hydrolase_3     haloacid dehalogenase-like hydrolase
       0.13   12.1   0.0       0.55   10.1   0.0    1.9  1  Acid_PPase      Acid Phosphatase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   0.0   1.4e-34   3.5e-31       1     177 [.      24     196 ..      24     197 .. 0.93

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 1.4e-34
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeygls.elseeelrkliglslrellrklgeseeeeekieellrkyneekkkkevkpydgvkelLeeLkeagykl 98 
                 ++FDlDg+ +d++ ++ +af  +++e   +   + ee+++++g    +++r +g   e   + e ++r+ +   +   v +++gv+++LeeL+ +g+++
  KIR65878.1  24 VVFDLDGVVVDSSAVMREAFSIAYAEVVGDgPAPFEEYNRHMGRYFPDIMRLMGLPLE---MEEPFVRESYRMAH--LVPLFPGVRQTLEELHGRGVRM 117
                 79**********************9997777999*********************988...45555555444444..59******************** PP

       HAD_2  99 givTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvia 177
                 +i+T ks   +++ l+ lg+ ++Fd++++s++v ++KP+p+++++al +l++ +e++++vGD   D+ +++ ag++++a
  KIR65878.1 118 AIATGKSGPRARSLLDTLGVLDLFDQVIGSDEVARPKPAPDIVLAALGHLDVPPEQAMMVGDAVIDLLSGRDAGVTTVA 196
                 ****************************************************************************987 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   2.5e-23   6.5e-20       1     210 []      21     191 ..      21     191 .. 0.89

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 2.5e-23
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH...HHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakar...sgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsq 96 
                 i++vvfD+dG++++++ + ++++  a                      +a+ +   + + +++ +     +  +  p+ ++ +            +  +
  KIR65878.1  21 IRAVVFDLDGVVVDSSAVMREAFSIA----------------------YAEVVgdgPAPFEEYNR-----HMGRYFPDIMRLM-----------GLPLE 81 
                 79**************6666666666......................666666556666*****.....*************...........77777 PP

                 CHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  97 grtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeeva 194
                  ++ ++      + + +a+  +++p++++++++L+ +g++++++tg +   a+++++ lG  d fd vi+sd+++  kp p++++aa+  L ++pe+ +
  KIR65878.1  82 MEEPFVR-----ESYRMAHLVPLFPGVRQTLEELHGRGVRMAIATGKSGPRARSLLDTLGvLDLFDQVIGSDEVARPKPAPDIVLAALGHLDVPPEQAM 175
                 7777777.....5566666666***************************************************************************** PP

                 EEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxx RF
   Hydrolase 195 mVGDgvnDaaalaaAg 210
                 mVGD v D+  ++ Ag
  KIR65878.1 176 MVGDAVIDLLSGRDAG 191
                 ***********99998 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0     4e-11     1e-07       1     131 [.      24     149 ..      24     185 .. 0.75
   2 ?   -1.4   0.0         1   2.7e+03      97     117 ..     199     218 ..     162     226 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 4e-11
         HAD   1 alfDfDgTLldgdsle......lllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalel 93 
                 ++fD+Dg  +d++  +      +            +     +++++ ++r+++r+   ++++l+   l+   e++ +e  r+   +  p l+ pg+++ 
  KIR65878.1  24 VVFDLDGVVVDSSAVMreafsiA----------YAEVVGDGPAPFEEYNRHMGRY-FPDIMRLMGLPLEME-EPFVRESYRMA--HLVP-LF-PGVRQT 106
                 79**********65554422111..........2224555666888888888888.666666666555544.45666666666..3334.57.9***** PP

         HAD  94 laahraaGdrvvvvSgglrplvepllaelg....adevlat.e 131
                 l++ + +G+r ++ +g   p ++ ll+ lg    +d+v+++ e
  KIR65878.1 107 LEELHGRGVRMAIATGKSGPRARSLLDTLGvldlFDQVIGSdE 149
                 ****************************************943 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1
         HAD  97 hraaGdrvvvvSgglrplvep 117
                 + + Gd  v++ +g++ +v++
  KIR65878.1 199 W-HGGDVAVLLAAGPDVVVHA 218
                 3.6788999999999998876 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.4   4.9e-11   1.2e-07       4      69 ..     154     216 ..     151     222 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 4.9e-11
                     TTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT--- CS
  Hydrolase_like   4 KPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyva 69 
                     KP+p ++ +al +l+++pe+ +m+GD    D++++++aG+++v+++    + + l   +++p++v+
      KIR65878.1 154 KPAPDIVLAALGHLDVPPEQAMMVGDA-VIDLLSGRDAGVTTVATTWHGGDVAVL--LAAGPDVVV 216
                     ***************************.***************998755555443..356666665 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.9e-05     0.073       1      62 [.      24     143 ..      24     154 .. 0.84
   2 ?    0.7   0.0      0.22   5.7e+02      53      95 ..     163     207 ..     158     213 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.9e-05
                  EEEESTTTSE.............................................................ETTEE-TTHHHHHHHHHHTT-EEEEEE CS
  Hydrolase_6   1 flfDidGvLw.............................................................rgdkaipgaaealnalraagkpvvllT 37 
                  ++fD+dGv++                                                             +   ++pg+ ++l+ l+ +g+++++ T
   KIR65878.1  24 VVFDLDGVVVdssavmreafsiayaevvgdgpapfeeynrhmgryfpdimrlmglplemeepfvresyrmaHLVPLFPGVRQTLEELHGRGVRMAIAT 121
                  6899999999999999999999999999999999999999999999999999999999999999999988888889********************** PP

                  ---SS-HHHHHHHHHHTT----GGG CS
  Hydrolase_6  38 Nnsskseeeyakkleklgvditeeq 62 
                   +s+   +++++    lgv    +q
   KIR65878.1 122 GKSGPRARSLLDT---LGVLDLFDQ 143
                  9999886666554...444444455 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.22
                  HTT.----GGGEEEHHHHHHHHHHHHSX.XXEEEEESXHHHHHHH CS
  Hydrolase_6  53 klg.vditeeqvvtsataaaeylkkrka.dkkvlvigeeglreel 95 
                  +lg +d+ +eq ++ ++a+ ++l+ r+a   +v  +   g+ ++l
   KIR65878.1 163 ALGhLDVPPEQAMMVGDAVIDLLSGRDAgVTTVATTWHGGDVAVL 207
                  5652469999*************9985524444444455555555 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.39     1e+03       1      18 [.      24      41 ..      24      52 .. 0.77
   2 ?    9.0   0.0   0.00041       1.1      20      54 ..     103     137 ..      99     147 .. 0.88
   3 ?    0.3   0.0      0.18   4.7e+02     196     216 ..     164     184 ..     160     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.39
                 EEEEIIIIIS-TTS---H CS
  Hydrolase_3  1 ialDlDGTLlnsdkkise 18
                 +++DlDG +++s   + e
   KIR65878.1 24 VVFDLDGVVVDSSAVMRE 41
                 69*****99998876665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00041
                  HHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCC CS
  Hydrolase_3  20 tkeaikklkekgikvviATGRslravlpvleelgl 54 
                   ++++++l+ +g+  +iATG s   ++++l+ lg+
   KIR65878.1 103 VRQTLEELHGRGVRMAIATGKSGPRARSLLDTLGV 137
                  5799***********************99999985 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.18
                  HHHCT--GGGEEEEESSGGGH CS
  Hydrolase_3 196 akelnisleeviafGDgeNDi 216
                  + +l++++e+ + +GD+  D+
   KIR65878.1 164 LGHLDVPPEQAMMVGDAVIDL 184
                  5699************98875 PP

>> Acid_PPase  Acid Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00022      0.55      30      86 ..      83     138 ..      21     162 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00022
                 -TTS.-EEETT--EE---TTHHHHHHHHHHTT--EEEEE--S-HHHHHHHHHHTT-G CS
  Acid_PPase  30 eskksevvDrrgeelklypdveeileelkskevklavaSrtdepdlarelLkllein 86 
                 e+   +   r  + + l+p v++ leel+ ++v++a+a   + p  ar+lL++l + 
  KIR65878.1  83 EEPFVRESYRMAHLVPLFPGVRQTLEELHGRGVRMAIATGKSGP-RARSLLDTLGVL 138
                 55554444466777899*********************765555.699999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1699.03
//
Query:       KIR65879.1  [L=244]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-12   47.9   0.0    3.7e-12   46.8   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    3.5e-11   43.6   0.3    8.2e-11   42.4   0.0    1.7  2  Methyltransf_11  Methyltransferase domain
    1.7e-09   37.7   0.0    3.3e-09   36.8   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
    1.8e-05   25.4   0.0    4.4e-05   24.2   0.0    1.7  2  Methyltransf_12  Methyltransferase domain
     0.0056   16.5   0.0      0.011   15.5   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
       0.18   10.8   0.0       0.24   10.4   0.0    1.1  1  RrnaAD           Ribosomal RNA adenine dimethylase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   1.2e-15   3.7e-12       2      97 .]      45     137 ..      44     137 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 1.2e-15
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEEST.GGG.SSHHHHHHHHHHHHHHE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssga.lhh.lsdedlekalkeiarvL 93 
                      L+++ GtGr++  la+r+    vtg+++s +m+++ r++++  ++ + +v+gd+ +   + g + lv+++++ +   l+++++ ++++++ar+L
       KIR65879.1  45 LEFAVGTGRVAVPLAERG--VPVTGIELSTAMVDRLRTKVD--EAALPVVVGDMATTV-APGAYTLVYLVFNtIANlLTQAEQVACFRNAARHL 133
                      899**************5..9*******************5..46899*****98876.557999999988877776999************** PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       KIR65879.1 134 GPGG 137
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   2.8e-14   8.2e-11       1      96 []      45     141 ..      45     141 .. 0.88
   2 ?   -2.5   0.0       2.8   8.3e+03      62      83 ..     172     197 ..     169     204 .. 0.65

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 2.8e-14
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES.-CCC-...CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvsse.vlhhv...edpekalkeiaRvLkp 90 
                      L++++GtGr+a +la+rg  v+g++ls++m+++ ++k+ e+   + +vv+d+ ++ ++ + + lv++ + ++ ++   +++ ++++++aR L p
       KIR65879.1  45 LEFAVGTGRVAVPLAERGVPVTGIELSTAMVDRLRTKVDEAA--LPVVVGDMATT-VAPGAYTLVYLVFnTIANLltqAEQVACFRNAARHLGP 135
                      7899*************************************9..899******85.55556666655444777778889*************** PP

                      EEEEEE CS
  Methyltransf_11  91 gGllvi 96 
                      gG++vi
       KIR65879.1 136 GGRFVI 141
                      ***996 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.8
                      EEEEEEES-CCC-....CCHHHHHHH CS
  Methyltransf_11  62 fDlvvssevlhhv....edpekalke 83 
                      +D+   + v hh+    +  +++++ 
       KIR65879.1 172 YDVLRQHVVSHHFrfgeDTEAQVFRT 197
                      67777778888886665555566655 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.1e-12   3.3e-09       7     163 ..      26     219 ..      20     221 .. 0.81

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.1e-12
  Methyltransf_23   7 eelsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae..kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdp 98 
                      e l+  ++rl++ l  gg  L+++ GtG+++  l+e+g+ vtg++ls ++v++++   +  a ++ +  +  ++  g + l++l   ++++ ++
       KIR65879.1  26 EVLRPTVDRLAA-LAGGGAALEFAVGTGRVAVPLAERGVPVTGIELSTAMVDRLRtkVDEAALPVVVGDMATTVAPGAYTLVYLV--FNTIANL 116
                      678888999998.999**************************************99877777777777788999999*****984..4555554 PP

  Methyltransf_23  99 p......ellrqiatllkpgGylllseplasl.................................kedrllldwlylvpagrhisffsarslke 153
                             + +r++a++l pgG+++++ +  +l                                 ++ r  +d +++v +  h++ +   +l  
       KIR65879.1 117 LtqaeqvACFRNAARHLGPGGRFVIELWVPELrqlppgrqatvwhcepgyigldtydvlrqhvvsHHFRFGEDTEAQVFRTPHRYIWP-AELDL 209
                      34445559*******************9877777888888888888888888887777777776444444555678899989999999.89999 PP

  Methyltransf_23 154 lleeaGlevv 163
                      +++ aG+e+ 
       KIR65879.1 210 MAQLAGFELE 219
                      9999999975 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.5e-08   4.4e-05       1      99 []      45     139 ..      45     139 .. 0.79
   2 ?   -2.8   0.0       3.6   1.1e+04      65      80 ..     170     188 ..     150     197 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.5e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvas.nvlhhl...kdirevldnir 90 
                      Le+  GtG+++ +l+e+  ++ +tg+++s++++     +l+ + ++ +  v + +        ++++ lv++  n++ +l   ++  + ++n++
       KIR65879.1  45 LEFAVGTGRVAVPLAER--GVPVTGIELSTAMV----DRLRTKVDEAALPVVVGDMATT--VAPGAYTLVYLVfNTIANLltqAEQVACFRNAA 130
                      89***************..**************....4444444434445555544433..3334999999766******9999999******* PP

  Methyltransf_12  91 klLkpgGrl 99 
                      ++L pgGr+
       KIR65879.1 131 RHLGPGGRF 139
                      *******96 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.6
  Methyltransf_12  65 ssfDlvvasnvlhhl...k 80 
                      +++D+   + v hh+   +
       KIR65879.1 170 DTYDVLRQHVVSHHFrfgE 188
                      5777777777777775554 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.7e-06     0.011       7     113 ..      44     145 ..      39     180 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.7e-06
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.ledekfDlilsnevlnaladpdkileeie 98 
                       l+ + GtG+ +  lae+  p   v+Gi+ s  ++ + r++ ++  l    + +gd+ +      ++   + + ++ + l ++a++ ++++++ 
       KIR65879.1  44 ALEFAVGTGRVAVPLAERGVP---VTGIELSTAMVDRLRTKVDEAALP---VVVGDMATtVAPGaYT-LVYLVFNTIANLLTQAEQVACFRNAA 130
                      578888**********88555...****************98877775...8999999964433344.23323333344699************ PP

  Methyltransf_31  99 rvlkpggilliedpr 113
                      r l pgg+++ie   
       KIR65879.1 131 RHLGPGGRFVIELWV 145
                      **********98655 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   8.1e-05      0.24      35      90 ..      45      99 ..      35     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.1e-05
                EEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHH CS
      RrnaAD 35 leigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvhqDflkfet 90
                le + G+G   ++La+r   v+ +El ++++ +l++k+  +  l vv  D+ ++  
  KIR65879.1 45 LEFAVGTGRVAVPLAERGVPVTGIELSTAMVDRLRTKVD-EAALPVVVGDMATTVA 99
                8999********************************998.8888888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1724.20
//
Query:       KIR65880.1  [L=199]
Description: hypothetical protein TK50_11325 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1457.81
//
Query:       KIR65881.1  [L=337]
Description: aminodehydroquinate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-80  268.4   0.2    3.6e-79  265.6   0.2    1.9  1  DHQ_synthase  3-dehydroquinate synthase
    2.2e-07   30.9   0.1    6.3e-06   26.1   0.1    2.6  1  Fe-ADH_2      Iron-containing alcohol dehydrogenase
    2.5e-05   23.2   5.4    0.00042   19.2   5.4    2.8  1  Fe-ADH        Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.6   0.2     6e-83   3.6e-79       4     261 ..      66     307 ..      63     308 .. 0.98

  Alignments for each domain:
  == domain 1  score: 265.6 bits;  conditional E-value: 6e-83
                   E-SSGGGCCHHHHHHHHHHHHHTT--TT-EEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE---SEEEE CS
  DHQ_synthase   4 vpdgeksKsletlekildalleakleRksllialGGGvvgDlaGfvAatylRGvrfvqvPttllaqvDssvGgKtainlplgKNliGafaqPkavli 100
                    +dge+ K+l+t+e++++a++e +l+R+++++++GGG+ +D++G++A++y+RG++++++Pt+llaqvD+svGgKta+nlp+gKNl+G+++qP+avl+
    KIR65881.1  66 ARDGEHDKTLATVEQLCRAFAEFGLTRTDAVVSCGGGTTTDVVGLAAGLYHRGIAVIHLPTSLLAQVDASVGGKTAVNLPEGKNLVGVYWQPRAVLC 162
                   679********************************************************************************************** PP

                   EGGGGGGS-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHCCTTTTGGGGGGTTHHHHHHHHHHHTTTT CS
  DHQ_synthase 101 dlevLktLperelraGlaEviKyalikdeelfelleenaeallkeeeeealeeliarsievkaevveeDekekglralLnlGHtigHaiEallgyek 197
                   d+e L+tLpere r+G++E+ +  +i   +l               + + ++e ia+++++ka+vv++De+++glr++Ln+GHt+gHa+E ++g+ +
    KIR65881.1 163 DTEHLTTLPERERRNGYGEIARAHFIGAGDL---------------RGRPVAEQIAACVALKARVVAADERDSGLRHILNYGHTLGHALEVATGF-R 243
                   ***************************9999...............45678899*****************************************.* PP

                   S-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTTT.-HHHHHHHHTTCTTX CS
  DHQ_synthase 198 llHGeaVaiGmvlaaelseklgllkkeeverllkllkklglpvslkelleveellealkkDkkv 261
                   l+HGeaV +G v+a +l+  lg + +e+v+++ ++++ +gl+++l+++++ +el++++++Dkk+
    KIR65881.1 244 LRHGEAVGVGTVFAGRLAGVLGRIGPERVAEHHEVVAGYGLDTELPSDVDHDELVALMRRDKKA 307
                   **************************************************************97 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   1.1e-09   6.3e-06      54     162 ..      68     183 ..      22     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.1e-09
    Fe-ADH_2  54 eveeeadleeveklvealre...ketdlvvavGgGtiiDiakyvs..aklnvpyvsvpTaaSvDGfaspgaslvvd..gkkrtvakaaaPlaviaDldv 145
                 + e++++l +ve+l +a++e   ++td+vv+ GgGt  D++ +++  +++++ ++ +pT++     as+g    v+  + k  v     P av+ D++ 
  KIR65881.1  68 DGEHDKTLATVEQLCRAFAEfglTRTDAVVSCGGGTTTDVVGLAAglYHRGIAVIHLPTSLLAQVDASVGGKTAVNlpEGKNLVGVYWQPRAVLCDTEH 166
                 355677788888888777655559********************966788999999****98888888887777766555555555678********** PP

    Fe-ADH_2 146 laeAPrrllasGvGDll 162
                 l++ P+r  + G+G++ 
  KIR65881.1 167 LTTLPERERRNGYGEIA 183
                 **************985 PP

>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   5.4     7e-08   0.00042       4     185 ..      21     179 ..      20     303 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 7e-08
                 EEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT....--EEEEEESHHHHHHHHH CS
      Fe-ADH   4 ivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareeg...advviavGGGsviDtAKa 99 
                 +++g+g+ ++l++ ++++ga+r+++v  +       + d  +        +v+   + e++ tl++ve++++++ e+g    d+v++ GGG++ D+  +
  KIR65881.1  21 VLIGPGVRHRLPAAVARIGARRVVVVSARPPE---WTPDPGVP------HRVVPARDGEHDKTLATVEQLCRAFAEFGltrTDAVVSCGGGTTTDVVGL 110
                 6899***************9999999977633...12222222......3466667889999************99965558***************** PP

                 HHHHTT..................--EEEEES..S-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHH CS
      Fe-ADH 100 ialllanpevedylgegkakkkkalpliaiPT..taGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatg 185
                 +a l+++                ++ +i  PT  +a  ++ v +   +  +e +  ++++     P+++++D+e + tlP r   ++ 
  KIR65881.1 111 AAGLYHR----------------GIAVIHLPTslLAQVDASVGGKTAVNLPEGKNLVGVY---WQPRAVLCDTEHLTTLPERERRNGY 179
                 *****95................4889999994445667777777667756664444555...8999999999999999988655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 2889.32
//
Query:       KIR65882.1  [L=4993]
Description: AMP-dependent synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-175  582.0  15.3    5.4e-89  298.1   0.5    3.8  4  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
   8.1e-151  502.0   7.2    3.2e-94  316.0   1.0    2.5  2  Acyl_transf_1    Acyl transferase domain
   4.6e-114  378.6  29.0      4e-54  183.3   0.3    5.7  4  KR               KR domain
   5.3e-101  338.3   0.0     1e-100  337.3   0.0    1.6  1  AMP-binding      AMP-binding enzyme
    6.2e-88  290.7   5.9    3.7e-43  146.3   0.5    3.3  2  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
      5e-68  229.5  39.4      8e-52  176.3   6.9    5.2  5  PS-DH            Polyketide synthase dehydratase
    2.1e-36  124.1   0.0    5.9e-12   45.8   0.0    3.8  3  PP-binding       Phosphopantetheine attachment site
    2.4e-28   98.8   0.0    2.9e-13   50.3   0.0    3.1  2  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    1.2e-20   73.8  16.2    1.8e-12   47.2   0.8    4.7  5  adh_short        short chain dehydrogenase
    5.2e-20   72.9   1.9    1.7e-19   71.2   0.1    3.0  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
    8.8e-18   64.6   1.5    8.4e-08   31.9   0.1    3.1  3  Thiolase_N       Thiolase, N-terminal domain
    1.9e-16   60.8   0.1    1.9e-16   60.8   0.1    4.8  2  AMP-binding_C    AMP-binding enzyme C-terminal domain
    8.8e-15   54.8   0.4      1e-12   48.2   0.0    4.4  3  ADH_zinc_N       Zinc-binding dehydrogenase
    6.2e-11   42.2   7.4    2.7e-07   30.3   0.7    3.2  3  Epimerase        NAD dependent epimerase/dehydratase family
    4.4e-08   32.9   0.2    0.00011   21.7   0.1    2.7  3  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.8e-06   27.3   0.0    9.3e-05   21.7   0.0    2.2  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
      2e-05   24.4   0.1      7e-05   22.7   0.0    1.9  2  ADH_N            Alcohol dehydrogenase GroES-like domain
    0.00069   19.9   7.9     0.0012   19.1   0.5    3.9  3  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    0.00089   18.3   0.0     0.0031   16.6   0.0    1.8  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
     0.0052   16.7   0.4      0.035   14.0   0.4    2.6  1  Erythro-docking  Erythronolide synthase, docking
  ------ inclusion threshold ------
       0.03   13.9   8.9       0.29   10.7   1.9    2.9  3  NmrA             NmrA-like family
       0.14   12.0   8.5       0.88    9.5   0.3    4.2  3  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
       0.29   10.8  11.0       0.43   10.3   2.9    3.5  3  SAT              Starter unit:ACP transacylase in aflatoxin b
        2.3    7.3   6.7        6.2    5.9   1.2    2.7  2  NAD_binding_4    Male sterility protein


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.1   0.5   7.2e-92   5.4e-89       2     253 .]    1089    1339 ..    1088    1339 .. 0.98
   2 ?   -2.0   0.3       2.9   2.2e+03      95     167 ..    1708    1788 ..    1677    1845 .. 0.60
   3 !  293.1   0.7   2.4e-90   1.8e-87       2     253 .]    2840    3095 ..    2839    3095 .. 0.93
   4 ?   -3.0   0.1       5.8   4.3e+03      82     124 ..    3434    3476 ..    3430    3513 .. 0.67

  Alignments for each domain:
  == domain 1  score: 298.1 bits;  conditional E-value: 7.2e-92
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     +pv+iv+m++r+Pgg++ ++e+w+l+ egr++ + +p+dr wd  +l+ ++++a+g++++++ggfl+ ++dfd+++f+isprea amdpqqrll
     KIR65882.1 1089 DPVVIVAMACRLPGGVGsPQELWDLVAEGREGLTGFPTDRgWDLAHLFSDDPDAPGTSYVRVGGFLPdAADFDATLFSISPREALAMDPQQRLL 1182
                     69******************************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     le++we +e+ag++p++l+gs++gvf+Gv+++dyaa   + ++g   +++   vg+ + +v++gr++yalgl+Gp+vtvdtACsSslv +h+a 
     KIR65882.1 1183 LETSWELFERAGIDPTSLRGSATGVFTGVMHHDYAANLRQAPPG--TEGYL-GVGT-AGSVVSGRVAYALGLEGPAVTVDTACSSSLVSLHLAA 1272
                     **********************************9988888888..79999.***9.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     q+lr+g++d+a+aGGv ++ tp+a++ fs+++ l+pdgrckaf+++adG+ ++EGv++++L+r++ a
     KIR65882.1 1273 QALRAGDCDLAVAGGVAVMGTPQAFVEFSRQRGLAPDGRCKAFADAADGTGWSEGVAVLLLERRSAA 1339
                     ***************************************************************9875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.9
                     HHHHHHHHHTS-HHTCTTGGEEEEEEESST...HH.......HHHHHHHHHTT...GGGSCTTHHHHHSTTHHHHHHHHHHT--SS CS
  ketoacyl-synt   95 aawealedagltpeeldgsrvgvfiGvgag...dy.......aalaaldedgs...evkaspkavgavlanviagrisyalglrGp 167 
                     a ++ le+ g+ p++l g +vg ++++  +   +        aa a l        +  + + av+a + + +a++++ ++gl ++
     KIR65882.1 1708 ALHRLLESWGVRPDALLGHSVGELAAAHVAgvfSLadaaalvAARARL----MqqlPDGGAMVAVEA-DEAEVAAHLTDRVGLAAV 1788
                     556677777777777777776666666655333112233332111111....011122222234554.555566666655555443 PP

  == domain 3  score: 293.1 bits;  conditional E-value: 2.4e-90
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadrwdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrlll 93  
                     epva+v+m++rfPgg + +e++w+lL +g+d i++lp+dr ++d + dp + ++g+++++ ggfl+ ++dfd++ffgisprea amdpq+rlll
     KIR65882.1 2840 EPVAVVAMACRFPGGIGsPEQLWRLLDDGGDVIGDLPTDRGWPDLY-DPVPGTPGRTYVRSGGFLAgIADFDAAFFGISPREALAMDPQHRLLL 2932
                     89**************************************888888.8********************************************** PP

                     HHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHH....HHHHHHHHHTT.GGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHH CS
  ketoacyl-synt   94 eaawealedagltpeeldgsrvgvfiGvgagdy....aalaaldedgs.evkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvav 182 
                     e++weale+ag++p +l+gsr+gvf+G+  +dy    a   + ++dg+   +     +g+ + +v++gr++yalgl+Gp+vtvdtACs+slva+
     KIR65882.1 2933 ETSWEALERAGIDPGTLRGSRTGVFAGTHGQDYadqiAP-GVASDDGEtTADEGHLLTGT-AGSVLSGRVAYALGLEGPAVTVDTACSASLVAL 3024
                     *******************************99655422.23333444333333347777.********************************* PP

                     HHHHHHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  183 haavqslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     h+a q+lr+g++d+alaGGv++l +p ++ gfs+++ l++dgrckaf+++adGf ++EGvG++v++rl+da
     KIR65882.1 3025 HLAAQALRAGDCDLALAGGVSVLSSPAGLTGFSRQRGLAADGRCKAFAEDADGFGMSEGVGVLVVERLSDA 3095
                     *********************************************************************98 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 5.8
                     HCTS-HHHHHHHHHHHHHHHHHTS-HHTCTTGGEEEEEEESST CS
  ketoacyl-synt   82 aeamdpqqrllleaawealedagltpeeldgsrvgvfiGvgag 124 
                     ++ + p+    ++  +e ++++g+ p+++ g + g +++++ +
     KIR65882.1 3434 VDVVQPALFATMVSLAELWRSYGVRPAAVVGHSQGEIAAACVA 3476
                     55666777778899999*********99988886666665555 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.0   0.7   1.9e-58   1.4e-55       3     318 ..    1631    1953 ..    1630    1954 .. 0.93
   2 !  316.0   1.0   4.3e-97   3.2e-94       1     318 [.    3375    3693 ..    3375    3694 .. 0.98

  Alignments for each domain:
  == domain 1  score: 189.0 bits;  conditional E-value: 1.9e-58
                     EE--TT---TTTTCCHHHC-HHHHHHHH....HHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEE CS
  Acyl_transf_1    3 vfsGqGsQwaGMGmeLlktskafaavia....radeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavv 88  
                     +f GqG Q  GMG+eL +  ++fa++ +    ++d+ ++ ++   v+dv+++++       ld++  +qpaL+a ++al  ll+s Gvrp+a++
     KIR65882.1 1631 LFGGQGGQRPGMGRELRAAYPVFAETFDaacaELDRCLAGHAPHPVADVVAAADGtdlaARLDDTLYTQPALFAFEVALHRLLESWGVRPDALL 1724
                     699******************9987654111178********************9888899********************************* PP

                     E-TTHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS.HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCE CS
  Acyl_transf_1   89 GHSlGElAaavvagalsseeallavvlrsrlmmqlagpgdmaavelaeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgal 182 
                     GHS+GElAaa+vag  s+++a+  v+ r rlm+ql   g+m ave +e e ++  +d+v +a++n+pr+vv+sg ++a+ ++ + ++++g++ +
     KIR65882.1 1725 GHSVGELAAAHVAGVFSLADAAALVAARARLMQQLPDGGAMVAVEADEAEVAAHLTDRVGLAAVNGPRSVVLSGDTDAVLAVAATLRAAGRRTS 1818
                     **********************************************9*********************************************** PP

                     EECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHH.HHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCC CS
  Acyl_transf_1  183 venvnvavhspqvdaiadalasaladiaprkpkvakisstsldes.serelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaal 275 
                     + +v+ a+hsp ++++ da ++  a ++ r+p+++  s ++ ++   +r +s e+wv+ +r +vrf + +++++  +  +f+e+ p  +l+a  
     KIR65882.1 1819 RLRVSHAFHSPRMEPMLDAFRAVAAGLTYRTPHLPVVSNVTGRPVdPARLCSPEHWVEHVRGTVRFLDGMRALRGLGVTTFLEVGPGGVLTAMA 1912
                     ********************************************95568899****************************************** PP

                     CCCCHHGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT-H CS
  Acyl_transf_1  276 ektlksaedvksatlvGklkrdltdflvtflyllakahltgse 318 
                     ++ l + + + + + v+ ++  +++   ++ ++ a++h+ g++
     KIR65882.1 1913 QDCLAD-DTADELAFVPAVRT-VDGEPDALVAAVARLHVRGVA 1953
                     *****4.77888899995554.444488888888888888876 PP

  == domain 2  score: 316.0 bits;  conditional E-value: 4.3e-97
                     EEEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T.TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTH CS
  Acyl_transf_1    1 vfvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe.glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlG 93  
                     vfvf+GqGsQw GMG++Ll++ ++fa+ +a++d a++++ gfsvldvlr++p  + ld++++vqpaL+a +++lael++s+GvrpaavvGHS+G
     KIR65882.1 3375 VFVFPGQGSQWPGMGLDLLDQAPVFAERMAACDAALRPHLGFSVLDVLRQAPDaPSLDRVDVVQPALFATMVSLAELWRSYGVRPAAVVGHSQG 3468
                     8*************************************************986589************************************** PP

                     HHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH...TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEE CS
  Acyl_transf_1   94 ElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklr.cqddvvgavansprrvvisgsqealrelvervskegvgalve 184 
                     E+Aaa vag ls+ +a+++v+lrsr ++ lag g+ma+v+l  + ++ +++   d v +a++n+p  vv+sg+++a++e+ ++++++g +++++
     KIR65882.1 3469 EIAAACVAGVLSLPDAAKVVALRSRAIRALAGHGAMASVALpaDVVRDRIArHGDAVAVAAVNGPAAVVVSGEEAAVEEVLAELAADGARVRRI 3562
                     *****************************************987788888779***************************************** PP

                     CCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCC CS
  Acyl_transf_1  185 nvnvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalekt 278 
                     +v++a+hs+qv++i+ +la+ala i p ++ v+  s+t l+  + +el  +yw++nlr+pv  + av+++a+ ++++ ve spH++l+ ++ +t
     KIR65882.1 3563 AVDYASHSAQVERIRADLAEALAGISPGPAAVPLFSTTDLRWLDGPELGPDYWYRNLRQPVELHRAVAELAALGHDTYVECSPHPVLTVGITET 3656
                     ********************************************************************************************** PP

                     CHHGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT-H CS
  Acyl_transf_1  279 lksaedvksatlvGklkrdltdflvtflyllakahltgse 318 
                     l   e   +  +vG+l+rd++d   +fl ++a++h+ g++
     KIR65882.1 3657 LA--EHDTPHVVVGSLQRDQGD-RARFLLSAAQLHVRGVA 3693
                     **..6778899***********.*************9997 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   3.0   2.7e-06     0.002       4     172 ..     730     886 ..     727     890 .. 0.81
   2 !  182.4   6.5   9.7e-57   7.2e-54       1     180 []    2472    2645 ..    2472    2645 .. 0.97
   3 ?    4.3   0.3     0.044        33      36      78 ..    3540    3583 ..    3508    3589 .. 0.72
   4 !  183.3   0.3   5.3e-57     4e-54       1     179 [.    4558    4736 ..    4558    4737 .. 0.98

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.7e-06
                 EEETTTSHHHHHHHHHHHH.HHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   4 litGGlGgLGlelarwlae.kgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 ++tG  G  G +lar+l++ +gar+l l    ++ d++ ++l+a l++ ga+v+ ++aD     a + +++     ++p+  v+ +  +++       +
  KIR65882.1 730 VVTGVDGPTGAALARHLVAaHGARRLRLAHAGPPDDAALRRLVADLTDAGATVTPLDADADTDGAPAGAVA----ADGPLGAVLLCPSAAD-----LAD 819
                 799**************85389******999999999999*******************544444444443....3468877776654432.....223 PP

                 HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEE CS
          KR 102 aedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavs 172
                 ++    ++a+ ++ a  L+  +++     f++   +a llg+ag+   aaa a l+al++ rr+ glpa  
  KIR65882.1 820 DA----AVAALLTLAGALDARTRHAAATAFTVAVPAALLLGAAGRERAAAAVAALHALVARRRAAGLPARL 886
                 33....344555667789*************************************************9965 PP

  == domain 2  score: 182.4 bits;  conditional E-value: 9.7e-57
                  SEEEEETTTSHHHHHHHHHHHH.HHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR    1 gtylitGGlGgLGlelarwlae.kgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96  
                  gt+l+tGG+Gg+G+++a++la+ +g ++lvl+sR++    ++++++++l+a g++v+vvaaDv+d++a+ a+l+ +    ++++ v+haAg+++d+l
  KIR65882.1 2472 GTVLVTGGTGGIGRHVATHLAAaHGVAELVLVSRTG----RHADWMDALTAAGTTVRVVAADVADRAALDAVLAPLA---GRLTAVVHAAGATDDAL 2561
                  89******************95389**********3....466799******************************8...899************** PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BTT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwae 180 
                  l+ ++a+++e++l++Kv+Gaw+Lhel++  +l  fvlfSS+++++gs+gq+nYaa+NaflDala++rr++glpa++++wglwae
  KIR65882.1 2562 LTGLDAARWERALRSKVHGAWHLHELTAGLDLAAFVLFSSASAVFGSPGQGNYAAGNAFLDALAAHRRAHGLPATALAWGLWAE 2645
                  **********************************************************************************86 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.044
                  .--HHHHHHHHHHHHTT-EEEE----TT.-HHHHHHHHHHHHHH CS
          KR   36 aadedskaliaelealgaevevvaaDvs.dkdavealleeikae 78  
                   ++++ ++ +ael+a ga+v+ +a+D + ++++ve++ +++ + 
  KIR65882.1 3540 GEEAAVEEVLAELAADGARVRRIAVDYAsHSAQVERIRADLAEA 3583
                  44677889******************651567788888777643 PP

  == domain 4  score: 183.3 bits;  conditional E-value: 5.3e-57
                  SEEEEETTTSHHHHHHHHHHHH.HHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR    1 gtylitGGlGgLGlelarwlae.kgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96  
                  gt+l+tGG+G LG  +ar l+  +g rhl+l sR ++  +  ++l+ael+alga+v+v+aaDv+d++av++l++++ ae  p++ v+h Agvl+d+ 
  KIR65882.1 4558 GTVLLTGGTGLLGGLVARRLVTgHGVRHLLLASRGGPDAPGVADLTAELTALGATVTVAAADVADRAAVARLVAAVPAER-PLTAVVHLAGVLDDGV 4653
                  89******************96599***************************************************9776.**************** PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  ++ +t ++l++v+apKv++a++Lhe++++ +l  fvlfSS ag++g +gq+nYaaaNa+lDala+ rr  glpa s +wglw+
  KIR65882.1 4654 VTALTPDRLDTVFAPKVDAARHLHEVTRHLDLAGFVLFSSGAGVFGVPGQGNYAAANAYLDALATRRRGAGLPAQSYAWGLWE 4736
                  **********************************************************************************8 PP

>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.3   0.0  1.4e-103    1e-100       2     422 ..      15     417 ..      14     418 .. 0.90

  Alignments for each domain:
  == domain 1  score: 337.3 bits;  conditional E-value: 1.4e-103
                  HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE CS
  AMP-binding   2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli 99 
                  +++a+++ d+va+ d  + + + Y+el +r+ rlA +L ++Gv++g+rVa++l n++e v ++la+ +a av vplnp+ t +ela++l+ds+a +++
   KIR65882.1  15 KAHAEEFGDRVAFRD--DRRAVRYAELAARTARLAGHLAAAGVGRGERVAFCLGNRVETVETWLAVTRAAAVGVPLNPRCTDAELAHLLDDSGAVLVV 110
                  67899********88..9*********************99********************************************************* PP

                  ETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCS CS
  AMP-binding 100 atvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrf 197
                    +d e l++ll+ +a+++a +  + +  d+++  + + + e  +++ +  +  + l  d++a ++YTSGTTG+PKGV  ++r  +++vas++++   
   KIR65882.1 111 --TDPEHLDQLLRLRADRPALR--LWVTGDGVAPDDVAAWGELVDAEPG-VPARDDLGLDEVAWMLYTSGTTGRPKGVLSTQRTCLWSVASCYVP-IP 202
                  ..99999999999999765555..5555566665555555554444443.335557899********************************9644.46 PP

                  CCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT-SEEEEESS- CS
  AMP-binding 198 klkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sgalkaakkakdlsslrlvllggep 294
                  +l+ dd+v++ lpl+h++++i ++l + ++Ga+  l+++++a d   +l+++++ ++tv+agvP+++++l+  +++  +     + + lr++l+gg+ 
   KIR65882.1 203 GLTGDDRVVWPLPLFHSLSHIGCVLSVTAVGASARLVDGFSADD---VLAAVAEDSATVLAGVPAMYHHLVTaARSTGF-----RAPDLRVCLVGGAI 292
                  7889************************************9955...689********************994544433.....6788********** PP

                  EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEET CS
  AMP-binding 295 lspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafdse 392
                     +l r+f+++f  ++l++YG TEt+g ++ ++++++ ++ gs+G+p+pgvev++v ++tg  vp g+eGe++vrgp+vm gY++ pe ta a+   
   KIR65882.1 293 TTGALRRAFEEVFDAPLLDAYGSTETCGSIA-ITRPDRPRVEGSCGQPVPGVEVRLVSPQTGVDVPAGVEGEVWVRGPSVMLGYHGLPEVTAAALR-- 387
                  *************99***************9.6668888999*****************************************************8.. PP

                  CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 393 grwlrTGDlgrldedGyleivgRkkdlikl 422
                  ++w+rTGDl+r+d+dG+l+++gR  +li++
   KIR65882.1 388 DGWYRTGDLARRDADGNLFVTGRHQELIIR 417
                  57*************************986 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.5   0.6   8.7e-46   6.5e-43       1     117 [.    1347    1464 ..    1347    1465 .. 0.98
   2 !  146.3   0.5   4.9e-46   3.7e-43       1     117 [.    3103    3220 ..    3103    3221 .. 0.98

  Alignments for each domain:
  == domain 1  score: 145.5 bits;  conditional E-value: 8.7e-46
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       +av++gsavnsdga+n+ltapng aq+r+i++ala+ag++ +dvd+veahgtgt+lgDpiE++al +++g+++   +pl +gS Ksn+GH++
       KIR65882.1 1347 LAVLRGSAVNSDGASNGLTAPNGPAQERVIRRALANAGLTGADVDVVEAHGTGTRLGDPIEAQALLATYGAGRGdAEPLRLGSLKSNLGHTQ 1438
                       69*********************************************************************999989*************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaG+a++ik+vlal+hg++p+tl++
       KIR65882.1 1439 AAAGAAGVIKMVLALRHGTLPATLHV 1464
                       *************************8 PP

  == domain 2  score: 146.3 bits;  conditional E-value: 4.9e-46
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       +a i+g+avn+dga+n+ltapng +q+r+i++ala ag++p+dvd veahgtgtplgDpiE+ea+ +++g++     pl +gSvKsn+GH++
       KIR65882.1 3103 LALIRGTAVNQDGASNGLTAPNGPSQERVIRAALAAAGLTPADVDAVEAHGTGTPLGDPIEAEAILATYGQRPAdAPPLLLGSVKSNLGHTQ 3194
                       689********************************************************************9998779************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaGva+++k+vla++hgv+p tl+ 
       KIR65882.1 3195 AAAGVAGVLKMVLAMRHGVLPRTLHA 3220
                       ************************96 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.4   1.8e+03     113     128 ..    1872    1887 ..    1853    1894 .. 0.81
   2 !   57.9  15.4   1.3e-18   9.4e-16       1     295 [.    2001    2269 ..    2001    2272 .. 0.84
   3 ?   -2.1   0.0       2.3   1.7e+03      81     139 ..    3232    3288 ..    3227    3302 .. 0.80
   4 ?    4.4   0.7     0.026        19      61     162 ..    3517    3620 ..    3489    3632 .. 0.73
   5 !  176.3   6.9   1.1e-54     8e-52       1     295 [.    3739    4023 ..    3739    4026 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.4
                  TT.EEEEEEEEEE--- CS
       PS-DH  113 eewtehatGtvrlaeg 128 
                  e+w+eh++Gtvr+  g
  KIR65882.1 1872 EHWVEHVRGTVRFLDG 1887
                  23**********8765 PP

  == domain 2  score: 57.9 bits;  conditional E-value: 1.3e-18
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hpllG+ ++ a   +vv+  r+ +a +pwL     dg ++lP+++ l +++  +  l       +++ +++++++ lp + +v+vq+++ + +++  
  KIR65882.1 2001 HPLLGAVLPVAGTGQVVCTGRVAAATHPWLVAPDADGPALLPATALLDVFAHLGVLLD----LPTVERLRVPAPVPLPAGLSVDVQVTVDAPDEHP- 2092
                  9**************************************************9999999....889*************999***********5544. PP

                  ....EEEEEEE-SS-TT.EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE---GG CS
       PS-DH   98 rawvefeifSregggeewtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealaelrlpee 194 
                  r+++++++++ +g+   w+e a++ ++ a ++a      +a  a+ ++p+ +r+v+ ++  +r     l  G      ra+w+  ++    +rlpe+
  KIR65882.1 2093 RRVARCHVRAADGQP--WREVAEAVLAPADHQA-----GPAAAAAVWPPTGARPVDLDTPQRRA----L-AG---DLARAAWVAGDRLCVDVRLPED 2174
                  799*********999..**********888777.....34444555778888888885555555....2.23...23578999999999******88 PP

                  GSSTTTT.-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEESEEEEE CS
       PS-DH  195 laggesa.yvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieglrlrr 290 
                  +++ +++ y++hP +lDaal+ll +a    a +a+aa+ P+a +   v+  ++++ + l+v+   ++++    ++ l++vd++G +v+++e + lr+
  KIR65882.1 2175 ARDADADrYAVHPLVLDAALRLLPLA--GFAPAAGAAARPTATDWAGVR-VHATGAHALRVVLAPAGAD----AVTLSAVDDAGAPVLDVERVVLRA 2264
                  87666557*************76333..456799999999987765555.3457788888888888777....6899999***************** PP

                  --XXX CS
       PS-DH  291 verea 295 
                  v + a
  KIR65882.1 2265 VAAPA 2269
                  99876 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.3
                  S-EEEEEEEEE-TTS-E....EEEEEEE-SS-TT.EEEEEEEEEE-----..--B--HHHH CS
       PS-DH   81 epvevqlslepeedgadrawvefeifSregggeewtehatGtvrlaegaa..aaavdleal 139 
                  ++ve+ ++++p  + ad + +++ i+S++ +g+  + h+  +++++e ++  a+++d++al
  KIR65882.1 3232 GSVELLTEARPWPR-AD-RPARAGISSFGISGT--NAHVVVEAVADEPQPdpAPPTDPAAL 3288
                  58999*******55.44.578***********8..79999999998888877666666665 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.026
                  -......-EEEEEEEE----.B--SS..-EEEEEEEEE-TTS-E....EEEEEEE-SS-TT..EEEEEEEEEE-------B--HHHHHHHS-SEE.. CS
       PS-DH   61 s.....kavelrdvsilkalvlpede..pvevqlslepeedgadrawvefeifSregggee.wtehatGtvrlaegaaaaavdlealqarcaepasl 149 
                        +av++  v+ ++a+v++ +e    ev  +l ++  ga  +++++  +S++++ e+  ++ a++ + + +g+a    +++ + +++ ++ ++
  KIR65882.1 3517 RiarhgDAVAVAAVNGPAAVVVSGEEaaVEEVLAELAAD--GARVRRIAVDYASHSAQVERiRADLAEALAGISPGPA----AVPLFSTTDLRWLDG 3607
                  13333489***************9887555666666666..3333566666666666666667999******999988....777777889999999 PP

                  ..E-HHHHHHHHH CS
       PS-DH  150 rsvssaefYerla 162 
                   ++ ++ +Y+ l+
  KIR65882.1 3608 PELGPDYWYRNLR 3620
                  9*********995 PP

  == domain 5  score: 176.3 bits;  conditional E-value: 1.1e-54
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--S.......S..-EEEEEE CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlped.......e..pvevqls 88  
                  hpllG+ v+ a+++ ++f  r+ +  + wL+DHrv+++v++Pg+g +e+ l A+ ++     + +l +++i+++l lp d       +  +++vql+
  KIR65882.1 3739 HPLLGASVALAEARGHLFTGRIAAGAPAWLADHRVGETVLVPGTGLVELCLRAGDEVG----CPVLDELVIEAPLALPADaagspgaGraATQVQLT 3831
                  9********************************************************9....9**************98733333221235788888 PP

                  EEE-TTS-E....EEEEEEE-SS-TT....EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEET CS
       PS-DH   89 lepeedgadrawvefeifSregggee...wtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgd 182 
                  + +++ ++   +  + ++Sr +++     wt+ha++t+++a+ a+  ++ l+a+++++a+pa+   +++  fY  laa g+ yGp+Fqglra+w+gd
  KIR65882.1 3832 VGAAD-DTG--RRPVAVHSRPADAPPgtpWTRHASATLSAAQPAP--PAGLAAWPPPHARPAD---LTG--FYAGLAADGYAYGPAFQGLRAVWTGD 3918
                  88884.444..458899999988888899**********998777..9999999999999976...666..************************** PP

                  TEEEEEE---GGGSSTTTT-SB-HHHHHHHHH.HG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-B CS
       PS-DH  183 gealaelrlpeelaggesayvlhPallDaalQ.llaaalsaeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGr 278 
                  +e++ae++lp+  ++++++y+lhPallDaal+ + ++  +  + + d++ lP+a++ ++++    a+ + l+v+ ++ +      ++ lt+ d++G 
  KIR65882.1 3919 DEVYAEVELPAGQRADADRYHLHPALLDAALHaAHFG--GVGDAGPDRLLLPFAWNGVALHA---AGASALRVRLTRVAP----HAIALTVADATGA 4006
                  ********************************55544..34479*****************6...455556666655443....5799********* PP

                  EEEEEESEEEEE--XXX CS
       PS-DH  279 vvaeieglrlrrverea 295 
                  +vae+  l +r+++r++
  KIR65882.1 4007 PVAEVASLAMRPIPRAE 4023
                  *************9987 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   8.8e-12   6.6e-09       2      67 .]     998    1064 ..     997    1064 .. 0.94
   2 !   45.8   0.0   7.8e-15   5.9e-12       3      67 .]    2753    2818 ..    2751    2818 .. 0.90
   3 !   38.0   0.0   2.1e-12   1.6e-09       2      67 .]    4842    4908 ..    4841    4908 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 8.8e-12
  PP-binding    2 klrelvaevlgvplee.idpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   +r++ a+v g+p  + + p   + +lG+ S+ av+l  +l ++ gv+++ +  f+hp++ +la+++
  KIR65882.1  998 LVRAATADVAGLPGPAaVRPGRAFKELGFTSVGAVALRDRLARATGVRLSATAAFDHPSPDALARHV 1064
                  689999******8888346**********************************************97 PP

  == domain 2  score: 45.8 bits;  conditional E-value: 7.8e-15
  PP-binding    3 lrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +r+  a+v g    e+i+p  ++ dlG+DSl+avel ++l+++ gv++ +  +f+hpt++ laa+l
  KIR65882.1 2753 VRARCATVVGHtGGEQIEPRRPFKDLGFDSLMAVELSNRLSAATGVRLAPHAVFNHPTPELLAAHL 2818
                  67777888886456679***********************************************97 PP

  == domain 3  score: 38.0 bits;  conditional E-value: 2.1e-12
  PP-binding    2 klrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   +r+ +a+vlg  ++++++p + + + G+DSl+avel ++l e+ g ++p + +f++p + +la +l
  KIR65882.1 4842 LVRAEAATVLGHaSPDAVKPAQAFNEIGFDSLTAVELRNRLTEATGHRLPATAIFDYPDPTALAGFL 4908
                  68999******86777789********************************************9876 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   1.5e-14   1.1e-11       1     111 [.    1467    1591 ..    1467    1592 .. 0.84
   2 !   50.3   0.0   3.8e-16   2.9e-13       4     111 ..    3226    3339 ..    3224    3340 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 1.5e-14
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk........eeslprLlvlsgrteeaveallekl 81  
                      P +e + ++ g +++ te+ pwp       ++v+sfG++G+n+Hvi+++++ ++++e++         +++ p  ++ls+ t ea+++++++l
      KIR65882.1 1467 PTSEAD-WAGGAVELLTEARPWPAVDrprrAAVSSFGISGTNAHVIIEAPPAADDEETAAdlaapgttRRRPPVPWPLSAATGEALRDQAARL 1558
                      677888.99*************99888999*********************998888888899999987888999****************** PP

  KAsynt_C_assoc   82 eehlld.aellsllneilseeisr..lpyRGya 111 
                       ++l+   ++ + ++  ++ +++r  l++R+ +
      KIR65882.1 1559 LAWLDGpGADADPADVGHALATTRaaLEHRAVV 1591
                      ***665234455666666666666669999865 PP

  == domain 2  score: 50.3 bits;  conditional E-value: 3.8e-16
  KAsynt_C_assoc    4 eipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk.eeslprLlvlsgrteeaveallekleehlldaell 91  
                      +++ ++ g++++ te+ pwp+      +g++sfG++G+n+Hv++++   e +++ ++ +++    ++ls+rt+ a+  ++ +l++hl+d+++ 
      KIR65882.1 3226 RVD-WAAGSVELLTEARPWPRADrparAGISSFGISGTNAHVVVEAVADEPQPDPAPpTDPAALPWLLSARTPGALAGQARRLRDHLADHPDQ 3317
                      678.999*************9988999*******************9977666666636677777899***********************99 PP

  KAsynt_C_assoc   92 sllneilseeisr..lpyRGya 111 
                         + + s +++r  ++ R+ +
      KIR65882.1 3318 PPRDAAWSLATTRaaFDARAVV 3339
                      9999999999888777777766 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.1   3.1e+03       3      30 ..     729     757 ..     728     793 .. 0.66
   2 !   47.2   0.8   2.4e-15   1.8e-12       2     161 ..    2473    2626 ..    2472    2636 .. 0.89
   3 ?    4.8   0.6     0.023        17      16      75 ..    3525    3584 ..    3522    3588 .. 0.76
   4 ?    0.2   0.1      0.56   4.2e+02       3      31 ..    4373    4401 ..    4371    4409 .. 0.90
   5 !   29.2   0.0   7.5e-10   5.6e-07       2     160 ..    4559    4717 ..    4558    4722 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.1
                 EEEESTTSHHHHHHHHHHHHT.T-EEEEE CS
   adh_short   3 vlvtGassGIGraiakelake.Gakvvvv 30 
                 ++vtG ++  G a+a++l+++ Ga+ + +
  KIR65882.1 729 AVVTGVDGPTGAALARHLVAAhGARRLRL 757
                 79***************976416655444 PP

  == domain 2  score: 47.2 bits;  conditional E-value: 2.4e-15
                  EEEEESTTSHHHHHHHHHHHHT.T-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGC CS
   adh_short    2 vvlvtGassGIGraiakelake.Gakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsel 96  
                  +vlvtG+++GIGr +a +la++ G+  +v v+r+  + + +++ l ++g+++ ++++Dv+dr++++a+++      g+l ++v+ AG t ++    l
  KIR65882.1 2473 TVLVTGGTGGIGRHVATHLAAAhGVAELVlVSRT-GRHADWMDALTAAGTTVRVVAADVADRAALDAVLAPL---AGRLTAVVHAAGATDDALLTGL 2565
                  79****************9875265555526666.6666******************************999...899******************* PP

                  SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHH CS
   adh_short   97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltr 161 
                  ++++wer +   ++g+ +l ++ +        ++ v  sS  +  +++g+  Y+A  a++++l+ 
  KIR65882.1 2566 DAARWERALRSKVHGAWHLHELTAGL----DLAAFVLFSSASAVFGSPGQGNYAAGNAFLDALAA 2626
                  *****************999987777....57999********************9999988875 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.023
                  HHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTT.SHHHHHHHHHHHHHHH CS
   adh_short   16 iakelakeGakvvvvdrseekleevakelkeegakalaiqvDvt.dreevealvekavkkl 75  
                  +a + + +G   vvv+ +e+++eev++el ++ga++  i+vD + ++++ve++ ++ ++ l
  KIR65882.1 3525 VAVAAV-NGPAAVVVSGEEAAVEEVLAELAADGARVRRIAVDYAsHSAQVERIRADLAEAL 3584
                  454444.45555666888899**********************967788888877776666 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.56
                  EEEESTTSHHHHHHHHHHHHTT-EEEEEE CS
   adh_short    3 vlvtGassGIGraiakelakeGakvvvvd 31  
                  vlv  a++G+G a ++     Ga+v++++
  KIR65882.1 4373 VLVHAAAGGVGMAAVQLARHLGAHVYATA 4401
                  89***********************9976 PP

  == domain 5  score: 29.2 bits;  conditional E-value: 7.5e-10
                  EEEEESTTSHHHHHHHHHHHH.TT-EEEEEESCHHH....HHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    2 vvlvtGassGIGraiakelak.eGakvvvvdrseek....leevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                  +vl tG+++ +G  +a++l++  G+++++++++  +    ++ + +el ++ga+++++++Dv+dr++v +lv+++ ++  +l ++v+ AG+  +g +
  KIR65882.1 4559 TVLLTGGTGLLGGLVARRLVTgHGVRHLLLASRGGPdapgVADLTAELTALGATVTVAAADVADRAAVARLVAAVPAE-RPLTAVVHLAGVLDDGVV 4654
                  69*****************97579999996665444111256666777777***********************9777.89**************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavaglt 160 
                    l+ ++ + v++  + ++ +l ++v+++++    +  v  sS ag  +v+g+  Y+A+ a +++l+
  KIR65882.1 4655 TALTPDRLDTVFAPKVDAARHL-HEVTRHLD---LAGFVLFSSGAGVFGVPGQGNYAAANAYLDALA 4717
                  ******************9887.67899977...5556778*****************988777765 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.1   2.3e-22   1.7e-19       6     133 .]    4419    4548 ..    4417    4548 .. 0.87

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 2.3e-22
                    EEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-..-HHHHHHHHH CS
  ADH_zinc_N_2    6 vidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas.aqadileelaa 95  
                       +rt dfe    a  gg+gvDvvld+++ e +++asl++lp gGr+v++g++   ++  ++a++  g + ++  l+++ ++ +q++ l el+ 
    KIR65882.1 4419 LASSRTLDFEphflATSGGRGVDVVLDSLARE-FVDASLRLLPRGGRFVEMGKT-DLRDPDRVAADHPGVAYQAYDLTTVDPDeVQRM-LVELMG 4510
                    5677889999999877789***********77.77*******888*******65.455566666668888888999999999966666.****** PP

                    HHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2   96 lieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133 
                    l+++Gkl+p + r ++  +a++A+r+++++r++GK+Vl
    KIR65882.1 4511 LFAAGKLTPLPVRAWDVRQAPDAFRHVQQARHVGKVVL 4548
                    *************************************8 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1   1.1e-10   8.4e-08      58     118 ..    1236    1294 ..    1229    1311 .. 0.89
   2 ?   -3.4   0.0       6.5   4.8e+03      23      51 ..    2927    2955 ..    2920    2970 .. 0.74
   3 !   30.1   0.2   4.1e-10     3e-07      51     117 ..    2985    3049 ..    2981    3065 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 1.1e-10
                  STSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS CS
  Thiolase_N   58 egqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsna 118 
                  +g+ ++  +a ++g+  e pavtv+ +csS+l +++laaq+++ag++d +vagGv  m++ 
  KIR65882.1 1236 AGSVVSGRVAYALGL--EGPAVTVDTACSSSLVSLHLAAQALRAGDCDLAVAGGVAVMGTP 1294
                  677788889999999..99************************************999865 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.5
                  HHHHHHHHHHHHHHHHTS-GGGCCEEEEE CS
  Thiolase_N   23 aeeLlaealkallekagvdpeevdevivG 51  
                   + Ll e+ +++le+ag+dp ++     G
  KIR65882.1 2927 QHRLLLETSWEALERAGIDPGTLRGSRTG 2955
                  5789999999**********998765555 PP

  == domain 3  score: 30.1 bits;  conditional E-value: 4.1e-10
                  EHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N   51 GnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117 
                  G  l++ +g+ ++  +a ++g+  e pavtv+ +cs +l a++laaq+++ag++d ++agGv  +s 
  KIR65882.1 2985 GHLLTGTAGSVLSGRVAYALGL--EGPAVTVDTACSASLVALHLAAQALRAGDCDLALAGGVSVLSS 3049
                  67788999999999********..99***********************************988875 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.1   2.6e-19   1.9e-16       1      76 []     426     500 ..     426     500 .. 0.93
   2 ?    0.2   1.5         2   1.5e+03       9      64 ..    3454    3514 ..    3449    3522 .. 0.63

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 2.6e-19
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE-.-----HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlk.dgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    evE al s+p+Va++aV G p+ev Ge++vaf v+  dg    +++  a +r++l  y+vp++++ +d++p+t+sGK
     KIR65882.1 426 EVEDALRSVPGVADVAVTGRPHEVLGEVPVAFLVPGpDGF--DPAAAYAACRERLSYYKVPDALYEIDRVPRTASGK 500
                    8**********************************31342..46********************************9 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 2
                     STTEEEEEEE-----TTS---EEEEE....E---..---...HHHHHHHHHHH.HT-TTTS-SEEE CS
  AMP-binding_C    9 hpaVaeaaVvGvpdevkGealvafVv....lkdg..sea...leeeLkahvrk.elgpyavpkkvv 64  
                     + +V+ aaVvG +     e+++a+V     l  +  +       ++++a + + +++++a p +vv
     KIR65882.1 3454 SYGVRPAAVVGHSQG---EIAAACVAgvlsLP-DaaK-VvalRSRAIRALAGHgAMASVALPADVV 3514
                     568999****98887...77766666542332.2221.1333566666666444778888887776 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.74   5.6e+02      29      94 ..    2491    2558 ..    2482    2586 .. 0.73
   2 ?   -2.9   0.0       8.3   6.2e+03      30      74 ..    2775    2816 ..    2751    2820 .. 0.80
   3 !   48.2   0.0   1.3e-15     1e-12       1      90 [.    4381    4470 ..    4381    4491 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.74
                  HHHHTTESEEEETTTC.HHHHHHHHHTT.TSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSE CS
  ADH_zinc_N   29 lakklGadevinykea.dlverikeltg.gegvdvvfecvGsgatleaalkllkpgGrlvvvGggkge 94  
                  la+  G+ e++  +++ +  +++ +lt  g  v vv   v++ a+l+a l+ l+ + + vv ++g  +
  KIR65882.1 2491 LAAAHGVAELVLVSRTgRHADWMDALTAaGTTVRVVAADVADRAALDAVLAPLAGRLTAVVHAAGATD 2558
                  66777855555556777888888888877888899988888899999888888888888877775444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8.3
                  HHHTTESEEEETTTCHHHHHHHHHTT.TSSEEEEEESSCSHHHHHH CS
  ADH_zinc_N   30 akklGadevinykeadlverikeltg.gegvdvvfecvGsgatlea 74  
                   k+lG d +      +l+ r+ ++tg    +++vf+++  ++ l a
  KIR65882.1 2775 FKDLGFDSLMAV---ELSNRLSAATGvRLAPHAVFNHPT-PELLAA 2816
                  688999999999...7999******98889999***999.887765 PP

  == domain 3  score: 48.2 bits;  conditional E-value: 1.3e-15
                  HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT.ESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC CS
  ADH_zinc_N    1 gvGlaavqlAkalGaeviavdsseeklelakklG.adevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg 90  
                  gvG+aavqlA++lGa+v+a++s   k   ++ +G  d  + ++++ d++ +  +  gg+gvdvv++ ++  + ++a+l+ll +gGr+v +G 
  KIR65882.1 4381 GVGMAAVQLARHLGAHVYATASP-GKWPALRAMGiPDSHLASSRTlDFEPHFLATSGGRGVDVVLDSLA-REFVDASLRLLPRGGRFVEMGK 4470
                  9******************8765.579*******99*********************************.*******************996 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.32   2.4e+02       2      56 ..     730     781 ..     729     792 .. 0.70
   2 !   30.3   0.7   3.6e-10   2.7e-07       1     123 [.    2474    2610 ..    2474    2623 .. 0.80
   3 !   13.1   0.2   6.5e-05     0.049       1     120 [.    4560    4699 ..    4560    4712 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.32
                 EEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHCEEEE--TT-HHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekg.yevigldrlssasntarledlelveldltdrsal 56 
                 +VtG+ G  G+al+++l +++  + + l++    +  a    l+   +dltd+ a+
  KIR65882.1 730 VVTGVDGPTGAALARHLVAAHgARRLRLAHAGPPDDAA----LRRLVADLTDAGAT 781
                 8****************887645566666663333333....35577888887765 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 3.6e-10
                  EEEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHH..T-SEEEE--S.---...HHHHHH CS
   Epimerase    1 ilVtGatGfiGsalvkallekg..yevigldrlssasntarledl.......elveldltdrsalerlfkee..qpdavihlAa.vgg...vaasse 82  
                  +lVtG+tG iG++++ +l++++   e++ ++r  +   +   + l       ++v +d+ dr+al+++++    + +av+h+A+   +    +  + 
  KIR65882.1 2474 VLVTGGTGGIGRHVATHLAAAHgvAELVLVSRTGRHADWM--DALtaagttvRVVAADVADRAALDAVLAPLagRLTAVVHAAGaTDDallTGLDAA 2568
                  79****************9988766677777774433333..333579**********************98889*******984443122244566 PP

                  SHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEE.GGGGTSCS CS
   Epimerase   83 dpadfieknlqgtlnlleaarkagvkrllflsS.sevYGkda 123 
                  + ++ +++ ++g+++l e     ++  ++ +sS s+v+G + 
  KIR65882.1 2569 RWERALRSKVHGAWHLHELTAGLDLAAFVLFSSaSAVFGSPG 2610
                  77788999*************999998888888689999765 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 6.5e-05
                  EEEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHHHH....T-SEEEE--S.---HHHHH CS
   Epimerase    1 ilVtGatGfiGsalvkallekg.yevigldrlssasntarledl..........elveldltdrsalerlfkee....qpdavihlAa.vggvaass 81  
                  +l+tG+tG++G  ++++l + + ++ + l+++   ++ +  + +          ++  +d+ dr+a++rl++ +      +av+hlA+   +  +++
  KIR65882.1 4560 VLLTGGTGLLGGLVARRLVTGHgVRHLLLASRGGPDAPGVADLTaeltalgatvTVAAADVADRAAVARLVAAVpaerPLTAVVHLAGvLDDGVVTA 4656
                  699**************987555776666666555555544444789******************9999887542112678******9654444444 PP

                  HSH..H.HHHHHHTHHHHHHHHHHHHHTCTEEEEEEE.GGGGT CS
   Epimerase   82 edp..a.dfieknlqgtlnlleaarkagvkrllflsS.sevYG 120 
                   +p     ++   +  +++l e+ r  ++  ++ +sS + v+G
  KIR65882.1 4657 LTPdrLdTVFAPKVDAARHLHEVTRHLDLAGFVLFSSgAGVFG 4699
                  3331131345567777777777777777777777666456666 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.4   1.8e+03       2      20 ..     731     749 ..     730     754 .. 0.90
   2 !   21.7   0.1   1.5e-07   0.00011       1     138 [.    2475    2611 ..    2475    2620 .. 0.75
   3 !    8.1   0.0     0.002       1.5       1      84 [.    4561    4647 ..    4561    4662 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.4
                    EETTTSHHHHHHHHHHHHC CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlek 20 
                    +TG+ G  G+ la++L++ 
     KIR65882.1 731 VTGVDGPTGAALARHLVAA 749
                    9***************976 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 1.5e-07
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH..T-SEEEE--S---....H CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev..qpdevynLAAqsh....V 88  
                     L+TG++G iG ++a +L +     hg+ ++    +tgr + +++   + + ++++++ +D+ D+++l+ +la    + ++v++ A+        
     KIR65882.1 2475 LVTGGTGGIGRHVATHLAAA----HGVAELVLVSRTGRHADWMDAL-TAAGTTVRVVAADVADRAALDAVLAPLagRLTAVVHAAGATDdallT 2563
                     9****************987....3333333334444444444332.345679*******************886799*****99875423224 PP

                     HHHTTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SS CS
  GDP_Man_Dehyd   89 dvsfekPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqe 138 
                     +      e+ ++ +v G+ +L e+   l l+  + ++++S s v+G++ +
     KIR65882.1 2564 GLDAARWERALRSKVHGAWHLHELTAGLDLA--AFVLFSSASAVFGSPGQ 2611
                     555566689999999******9999877764..66778999999999875 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.002
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH....T-SEEEE--S CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev....qpdevynLAA 84  
                     L TG++G  G  +a++L++ +   h +       ++  ++ l+ +  + l  ++++  +D+ D++++ rl+a v      ++v++LA+
     KIR65882.1 4561 LLTGGTGLLGGLVARRLVTGHGVRHLLLASRGGPDAPGVADLTAEL-TALGATVTVAAADVADRAAVARLVAAVpaerPLTAVVHLAG 4647
                     78****************9877778888888888999999998755.57899*******************98855535689999996 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.2e-07   9.3e-05       1     132 [.    2474    2605 ..    2474    2612 .. 0.81
   2 ?    3.3   0.0     0.049        36       1      76 [.    4560    4633 ..    4560    4651 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.2e-07
                       EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT....T-SEEEE------ CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel..kvdvvfhaAAlKh 89  
                       vlvtG++G iG+++ +++++   +++++l++r+  + + ++  +    + +++     +v +dv+d++ l+ +l  l  +  +v+haA    
       KIR65882.1 2474 VLVTGGTGGIGRHVATHLAAAhGVAELVLVSRTGRHADWMDALTA---AGTTV----RVVAADVADRAALDAVLAPLagRLTAVVHAAGATD 2558
                       89***************998769**************99998652...33233....35699***********9965337899****97665 PP

                       HHHH....HHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGGS CS
  Polysacc_synt_2   90 VPlv....eenpleaiktNvlgtenvieaaieagvkkvvliStDKAv 132 
                         l+       +  a++  v+g+ ++ e +   +  ++vl S+  Av
       KIR65882.1 2559 DALLtgldAARWERALRSKVHGAWHLHELTAGLDLAAFVLFSSASAV 2605
                       4443122135677899***********************99998877 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.049
                       EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT.. CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel 76  
                       vl+tG++G +G  + r++++   +++++l +r       +++ + +el++  l +++++  +dv+d++ +++++ ++
       KIR65882.1 4560 VLLTGGTGLLGGLVARRLVTGhGVRHLLLASRGGPDAPGVADLT-AELTA--LGATVTVAAADVADRAAVARLVAAV 4633
                       89***************9987699********998888887754.34443..5566778899999999999887644 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       7.6   5.7e+03      33      64 ..    3750    3782 ..    3743    3796 .. 0.77
   2 !   22.7   0.0   9.4e-08     7e-05       3      61 ..    4263    4318 ..    4261    4326 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.6
                  EE---EEEEEEEEESTT.-CS--TT-EEEE-SE CS
       ADH_N   33 lilGHEivGeveevgpe.vkklkvGdrVvvepl 64  
                   + GH ++G +++  p+ + + +vG+ V+v+ +
  KIR65882.1 3750 EARGHLFTGRIAAGAPAwLADHRVGETVLVPGT 3782
                  5789********98877246699****999765 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 9.4e-08
                  EEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE CS
       ADH_N    3 evlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvv 61  
                  +v+++v+aag++  D+  + g   l    p  +G E++G+v evg +v++l+ GdrV+ 
  KIR65882.1 4263 DVRVRVRAAGLNFRDVLNALG---LYPGDPGPPGGEAAGVVTEVGADVTDLRPGDRVLG 4318
                  79*****************99...566666679************************86 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.5   1.7e-06    0.0012       1      83 [.    2474    2560 ..    2474    2579 .. 0.83
   2 ?   -2.2   0.0       6.3   4.7e+03      68     101 ..    4369    4402 ..    4361    4411 .. 0.83
   3 ?    2.9   0.3      0.17   1.3e+02       2      79 ..    4561    4648 ..    4560    4658 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.7e-06
                       EEEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.TTTCEEEEE--TTTHHHHHHHHHTTS....SEEEE-SSGGGHH CS
  Sacchrp_dh_NADP    1 vliiGa.GsvGqavaellarhfdvdaeitvadrskeklealaaka.lgvrfeaialdaenyeavLaallkeg....dlvvnlsppissl 83  
                       vl+ G+ G++G+ va  la+ + v ae+++++r+ ++++ + a + +g+++  +a d+++++a L+a+l+      ++vv++++ + ++
       KIR65882.1 2474 VLVTGGtGGIGRHVATHLAAAHGV-AELVLVSRTGRHADWMDALTaAGTTVRVVAADVADRAA-LDAVLAPLagrlTAVVHAAGATDDA 2560
                       6788888*************9999.5******9999987664433599999999999999999.88887766667899***99998654 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.3
                       TTSSEEEE-SSGGGHHHHHHHHHHHT-EEEESS- CS
  Sacchrp_dh_NADP   68 kegdlvvnlsppissldvlkaCietgvhyvdtsi 101 
                       ++  ++v+++    +++ +++++  g+h+  t+ 
       KIR65882.1 4369 AGESVLVHAAAGGVGMAAVQLARHLGAHVYATAS 4402
                       4458999999999***************988776 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.17
                       EEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.....TTTCEEEEE--TTTHHHHHHHHHTTS......SEEEE-SSG CS
  Sacchrp_dh_NADP    2 liiGa.GsvGqavaellarhfdvdaeitvadrskeklealaaka.....lgvrfeaialdaenyeavLaallkeg......dlvvnlspp 79  
                       l+ G+ G  G  va+ l+  + v+ ++ +a+r    +  +a+ +     lg +++ +a d+++++a +a+l++        ++vv+l++ 
       KIR65882.1 4561 LLTGGtGLLGGLVARRLVTGHGVR-HLLLASRGGPDAPGVADLTaeltaLGATVTVAAADVADRAA-VARLVAAVpaerplTAVVHLAGV 4648
                       566777****************95.******999998888776688899****************9.88888877666788888888765 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.2e-06    0.0031       1     123 [.    2475    2608 ..    2475    2629 .. 0.81
   2 ?   -1.8   0.0       1.7   1.3e+03       2      78 ..    4562    4650 ..    4561    4701 .. 0.56

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.2e-06
   3Beta_HSD    1 vvtGgaGFlGralvkeLvrleelkevrvlD.lrespelleelskvnvkk.viegDvtdkdkleeale....gvdvvihlaslvd...vag..klted 86  
                  +vtGg+G +Gr++  +L  ++ + e+  +     +  + + l+  +++  v+ +Dv d + l+++l        +v+h a+++d   ++g    + +
  KIR65882.1 2475 LVTGGTGGIGRHVATHLAAAHGVAELVLVSrTGRHADWMDALTAAGTTVrVVAADVADRAALDAVLAplagRLTAVVHAAGATDdalLTGldAARWE 2571
                  69******************997776555435556666687777776656**************99733224689*******995544554466789 PP

   3Beta_HSD   87 eimkvnvkGTrnvleacvkagvrvlvYtSsaevvgpn 123 
                  +  +  v+G   + e     ++ ++v  Ssa++v++ 
  KIR65882.1 2572 RALRSKVHGAWHLHELTAGLDLAAFVLFSSASAVFGS 2608
                  999********************************94 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.7
   3Beta_HSD    2 vtGgaGFlGralvkeLvrleelkevrvlD........lrespelleelskvnvkk.viegDvtdkdkleealegv......dvvihlaslvd 78  
                  +tGg+G lG  + ++Lv  + ++++  +         +     l  el+ ++ +  v  +Dv d + + + +  v       +v+hla++ d
  KIR65882.1 4562 LTGGTGLLGGLVARRLVTGHGVRHLLLASrggpdapgV---ADLTAELTALGATVtVAAADVADRAAVARLVAAVpaerplTAVVHLAGVLD 4650
                  79999999999999999988766665554443332221...222222333332223677777777777665544311112256777777665 PP

>> Erythro-docking  Erythronolide synthase, docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.4   4.7e-05     0.035       8      47 ..    4923    4963 ..    4918    4970 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.7e-05
                       THHHHHHHHHHH.HHHTTSS-THHHHHHHHHHHHHHHHHHH CS
  Erythro-docking    8 vGdRLDeLekaL.eaLsdedGhdDvGaRLeaLLRRWnsRRa 47  
                       + + L++Le+ L e + +++ h  v aRLe L+ +W+  R 
       KIR65882.1 4923 ILAELENLERSLaETVVEAELHTQVAARLEVLVAKWRTMRG 4963
                       55789******978999*******************98774 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.9   0.00038      0.29       1      62 [.    2474    2540 ..    2474    2553 .. 0.86
   2 ?   -3.4   0.0       7.8   5.8e+03     177     220 ..    2820    2864 ..    2813    2867 .. 0.85
   3 ?    6.0   0.8     0.011       7.9       1      65 [.    4560    4633 ..    4560    4636 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00038
                  EEESSTTSHHHHHHHHHHHH.HT-EEEEEES-S..-SHHHHHHHHSTTE..EEES-TT-HHHHHHHH CS
        NmrA    1 IlviGaTGrqGksvvrallk.aghkvralvRdt..kselakslkeaGve..lvkgdlddkeslveal 62  
                  +lv+G+TG +G++v+ +l++ +g    +lv  t  + + +++l +aG +  +v++d+ d++ l+++l
  KIR65882.1 2474 VLVTGGTGGIGRHVATHLAAaHGVAELVLVSRTgrHADWMDALTAAGTTvrVVAADVADRAALDAVL 2540
                  79*************99988688888889988888889999999999662268*********99876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.8
                  S-EE.-HHHHHHHHHHHHHHHHHHHTTEEEEE-SEEE-HHHHHHH CS
        NmrA  177 avll.daeeDiGafvikilkdprklkgkriklagntlsgneivel 220 
                  a+ll ++ ++++ ++  ++++p ++ + + +++g + s++++ +l
  KIR65882.1 2820 ARLLgTTAAEVADATTVAADEPVAVVAMACRFPGGIGSPEQLWRL 2864
                  666667899*****************************9999776 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.011
                  EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S........-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHTT- CS
        NmrA    1 IlviGaTGrqGksvvrallkaghkvralvRdt........kselakslkeaGvelv..kgdlddkeslvealkgv 65  
                  +l +G+TG +G+ v+r l+  gh vr l+  +          +l ++l + G+++   ++d+ d++ +++++  v
  KIR65882.1 4560 VLLTGGTGLLGGLVARRLV-TGHGVRHLLLASrggpdapgVADLTAELTALGATVTvaAADVADRAAVARLVAAV 4633
                  6889**********99987.69****999988899*9999999999******986447999*****999998766 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2     0.025        19       3      28 ..    1257    1282 ..    1255    1319 .. 0.88
   2 ?   -2.2   0.2       5.3     4e+03      50      74 ..    2233    2257 ..    2225    2259 .. 0.86
   3 ?    9.5   0.3    0.0012      0.88       3      38 ..    3013    3048 ..    3011    3066 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.025
                   EE-GGGHHHHHHHHHHHHHHTTS-SE CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakr 28  
                   + +aCs+ ++ l++A++++++g +  
   KIR65882.1 1257 VDTACSSSLVSLHLAAQALRAGDCDL 1282
                   5689******************8764 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.3
                   TTB-EEEEEEEEEEESSSSCEEEEE CS
  ACP_syn_III   50 vlfGDGAgAvvleaseeegarilds 74  
                   vl   GA Av l+a ++ ga++ld+
   KIR65882.1 2233 VLAPAGADAVTLSAVDDAGAPVLDV 2257
                   666779*********9999999987 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0012
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGG CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetls 38  
                   + +aCs+ ++al++A++++++g +  +L  g  +ls
   KIR65882.1 3013 VDTACSASLVALHLAAQALRAGDCDLALAGGVSVLS 3048
                   5689********************999988877777 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.7      0.58   4.4e+02     106     130 ..    1722    1746 ..    1708    1759 .. 0.81
   2 ?    2.4   0.0      0.15   1.1e+02     185     240 .]    1772    1827 ..    1750    1827 .. 0.85
   3 ?   10.3   2.9   0.00058      0.43      81     197 ..    3444    3563 ..    3401    3573 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.58
         SAT  106 ylvGlCtGllaAaavacskslseLv 130 
                   l+G++ G laAa va   sl++  
  KIR65882.1 1722 ALLGHSVGELAAAHVAGVFSLADAA 1746
                  79*************9988887654 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.15
         SAT  185 neekglppasrvyisavssss.vtisGpPstleallksskakkkkkksklpiyapyH 240 
                   +e +   + rv  +av++++ v++sG  +++ a+ ++ +a+ +++  +l+++ ++H
  KIR65882.1 1772 EAEVAAHLTDRVGLAAVNGPRsVVLSGDTDAVLAVAATLRAAGRRTS-RLRVSHAFH 1827
                  4555556679999*****9999**********************987.9****9999 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00058
         SAT   81 ciaqlaqfivyleenpeeypspestylvGlCtGllaAaavacsksl...seLvplaveavrvafrlGlevar......vaarle.....egssssse 163 
                  +++ la++ + +      + +  +  +vG+++G +aAa+va   sl   +++v+l   a+r++   G+ ++       v++r++        ++ ++
  KIR65882.1 3444 TMVSLAELWRSY------GVR--PAAVVGHSQGEIAAACVAGVLSLpdaAKVVALRSRAIRALAGHGAMASValpadvVRDRIArhgdaVAVAAVNG 3532
                  455555555554......332..458**************766665111568899999999999888888878888888888888777544444455 PP

         SAT  164 sWslavtglseeelekalaefneekglppasrvy 197 
                  + +++v+g +e+++e++lae+ ++ +  + +r+ 
  KIR65882.1 3533 PAAVVVSG-EEAAVEEVLAELAADGA--RVRRIA 3563
                  55555555.99*******99988766..555555 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   1.2    0.0083       6.2       1     137 [.    2476    2604 ..    2476    2618 .. 0.71
   2 ?    3.5   0.4     0.044        33       1      36 [.    4562    4597 ..    4562    4627 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0083
                     EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviih 93  
                     +TG+TG +G+++   L   +  v +++l+ R+ + ++ ++ l+++                 ++vv++D+++    L+ + l  la ++++++h
     KIR65882.1 2476 VTGGTGGIGRHVATHLAAAHG-VaELVLVSRTGRHADWMDALTAA--------------GTTVRVVAADVADRA-ALD-AVLAPLAGRLTAVVH 2552
                     7****************9998.55999999999998888888333..............344678888887654.565.456778888888888 PP

                     --SS-S.ST.......TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE..G CS
  NAD_binding_4   94 saAtvnfde.......pykellrvNveGtrevlelakklkklkvllhvST..a 137 
                      a+ ++          + +++lr  v+G+ ++ el ++l    +++ +S+  a
     KIR65882.1 2553 AAGATDDALltgldaaRWERALRSKVHGAWHLHELTAGLDLA-AFVLFSSasA 2604
                     887776332222333477778888888888888888877777.7777776544 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.044
                     EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHHH CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaksges 36  
                     lTG+TG LG  + ++L++ +  v ++ l  R   ++ 
     KIR65882.1 4562 LTGGTGLLGGLVARRLVTGHG-VrHLLLASRGGPDAP 4597
                     8****************9997.657777777665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4993 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 1.77u 0.29s 00:00:02.06 Elapsed: 00:00:00.51
# Mc/sec: 29521.90
//
Query:       KIR65883.1  [L=526]
Description: 3-(3-hydroxyphenyl)propionate hydroxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-60  202.8   0.0    1.2e-59  202.3   0.0    1.2  1  FAD_binding_3   FAD binding domain
    0.00058   19.5   0.5       0.22   11.1   0.1    2.7  2  DAO             FAD dependent oxidoreductase
      0.004   16.4   0.1       0.21   10.8   0.1    2.4  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0041   16.4   0.0      0.093   12.0   0.0    2.5  2  Thi4            Thi4 family
     0.0062   15.7   0.0       0.05   12.7   0.0    2.1  2  FAD_binding_2   FAD binding domain
  ------ inclusion threshold ------
      0.013   14.3   0.3       0.87    8.4   0.1    2.1  2  Trp_halogenase  Tryptophan halogenase
       0.02   15.1   0.0      0.059   13.6   0.0    1.8  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      0.065   12.6   0.0       0.18   11.1   0.1    1.6  2  FAD_oxidored    FAD dependent oxidoreductase
      0.089   11.5   0.0       0.13   11.0   0.0    1.2  1  HI0933_like     HI0933-like protein
        0.2   11.2   0.1       0.38   10.3   0.1    1.4  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.3   0.0   6.9e-63   1.2e-59       2     348 ..       2     341 ..       1     342 [. 0.90

  Alignments for each domain:
  == domain 1  score: 202.3 bits;  conditional E-value: 6.9e-63
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEE.EEEEECCCCCEEEEEHH..CHH CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmge.alynelsdtpkaradle..les 94 
                    tdVlIVG Gp+G ++a lL+++G  v +vek++t +  pra   + +  ++l    l d++       el+ge +++n +++t   ++++     +
     KIR65883.1   2 TDVLIVGYGPVGQVAAILLAQRGFTVQVVEKWATPYSMPRAVSYDGEASRILAACDLGDTLDPVC---ELSGEyTWKNGFGRT-LLHVKVAedGPT 93 
                    89***********************************************************9999...555550556668888.333333313459 PP

                    CST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEE CS
  FAD_binding_3  95 spervtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvld 189
                    ++++   + q+ le +L+++ ++ + ++v ++ ev+ l +++++v+  + d  +g+ +t++a+++ G+DG++S vr+ lg +++  +  y++ v d
     KIR65883.1  94 GWPDSISFYQPGLEAALAARGAALPgVRVLRGVEVTDLADHGDHVEVAAVDA-DGTPRTFTADWVLGCDGANSFVRRWLGATVTDLGFGYDWLVCD 188
                    *******************9999999********************999998.79999************************9999999******* PP

                    EEEEC-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEEEEEEEEEEEEESSSEETT CS
  FAD_binding_3 190 vlfdadlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivgektldveieevsawtvaqrvaekyrkgr 285
                    v+ +++++   +p+ l ++++ r  + ++    +    + +e+++  +e+ e+f++e  + rl  ++++  ++++++++ ++t ++ +a+++r+gr
     KIR65883.1 189 VVLNEPVE--FKPNNLQICDPARPRTAVSAGP-D---HRRWEFMRVPGETLEEFQTEASVWRLLGLFDITPATARLDRYGVYTTQACYADTWRSGR 278
                    *******9..5554455555544445555555.2...3579999999************************************************* PP

                    EEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 286 vflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvdf 348
                    vflaGDAaH++pP  GqG+ ++ +D++nLawkL +v +G A+ +lLdtYe er+a++q +++ 
     KIR65883.1 279 VFLAGDAAHVMPPFLGQGMSSGFRDVINLAWKLDLVRRGLADATLLDTYEVERKAHVQHAIRM 341
                    **********************************************************99875 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00012      0.22       1      29 [.       3      33 ..       3      38 .. 0.94
   2 !    5.8   0.0    0.0051       9.1     151     204 ..     109     165 ..      91     178 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                EEEEECTSHHHHHHHHHHHHTT..EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekg 29
                dv+i+G G +G  +A  La+rg  V ++ek 
  KIR65883.1  3 DVLIVGYGPVGQVAAILLAQRGftVQVVEKW 33
                8****************************95 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0051
                 HHHHH.HHHTT-EEEESECEEEEEEEETCEEEEE...EECTEEEE..EEEEEEE--GGGH CS
         DAO 151 alara.aealGveilegtevtgleeedgkvwgve...rttpgend..aadavVnaaGaws 204
                 ala++ a+  Gv++l+g evt+l ++   + +ve   ++++g+ +  +ad v  + Ga s
  KIR65883.1 109 ALAARgAALPGVRVLRGVEVTDLADH---GDHVEvaaVDADGTPRtfTADWVLGCDGANS 165
                 4555548888*************665...3444444533335442235577888888875 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00012      0.21       2      35 ..       3      35 ..       2      74 .. 0.86
   2 ?    3.0   0.0     0.028        50     182     236 ..     103     162 ..      95     168 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtc 35
                 dv+++G Gp G  aa+ laq g+ v +ve + ++
   KIR65883.1  3 DVLIVGYGPVGQVAAILLAQRGFTVQVVE-KWAT 35
                 89**************************5.4333 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.028
                  -HHHHHHHHHHHHHT.TEEEEESCEEEEEEETTEEEE..EEETTSCE..EEESEEEE-S- CS
                  xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx..xxxxxxxx..xxxxxxxxxxx RF
  Pyr_redox_2 182 dkelsaaleealeke.Gvevklgtsvkeidgngekle..vvledgee..idadlvvvavG 236
                  ++ l+aal+++  +  Gv+v  g +v+++ ++g+++e   v+ dg+   + ad v+ + G
   KIR65883.1 103 QPGLEAALAARGAALpGVRVLRGVEVTDLADHGDHVEvaAVDADGTPrtFTADWVLGCDG 162
                  5666777777777777*****************955544788777766699999988877 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   5.2e-05     0.093      18      49 ..       2      32 ..       1      37 [. 0.93
   2 ?    1.4   0.0     0.086   1.5e+02     101     134 ..     108     142 ..     104     148 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.2e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailer 49
                +Dv+ivG G+ G  aa  la++ ++ v ++e+
  KIR65883.1  2 TDVLIVGYGPVGQVAAILLAQR-GFTVQVVEK 32
                7*********************.******997 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.086
                 HHHHHHHHTSTTEEEEESEEEEEEEEETB.TEEEE CS
        Thi4 101 stllskvlqlanvkllnavaveDlivreg.egvaG 134
                 + l+++  +l++v++l +v v Dl  + + ++va 
  KIR65883.1 108 AALAARGAALPGVRVLRGVEVTDLADHGDhVEVAA 142
                 67899999***************988876566665 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.8e-05      0.05       1      30 [.       3      32 ..       3      36 .. 0.97
   2 ?    0.3   0.0      0.16   2.8e+02     146     200 ..     109     162 ..      81     233 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.8e-05
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEES CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvek 30
                   Dv+++G G  G +AA+ +a++G +v vvek
     KIR65883.1  3 DVLIVGYGPVGQVAAILLAQRGFTVQVVEK 32
                   9****************************9 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.16
                    HHHHHHHTCT.EEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE--- CS
  FAD_binding_2 146 rlvesarkag.vdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatg 200
                    +l+++  +++ v+++   e+++L  ++++v  a v   ++g+ ++++a+ v+   g
     KIR65883.1 109 ALAARGAALPgVRVLRGVEVTDLADHGDHVEVAAVD--ADGTPRTFTADWVLGCDG 162
                    333333344469999999999999999999999999..888888888887765554 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   0.00049      0.87       1      37 [.       3      36 ..       3      39 .. 0.90
   2 ?    3.9   0.0     0.011        20     163     253 ..     114     216 ..     102     225 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00049
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeig 37
                    +++ivG G+ G +aA++la+ +   ++v++ve+ +++
      KIR65883.1  3 DVLIVGYGPVGQVAAILLAQRG---FTVQVVEKWATP 36
                    699****************999...899999987665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.011
                     HHHHCT-EEEE--EEEEEE-TTS-EEEEEETT...S-EEE-SEEEE-SGGG-IIIIIIT---EEE-...TTT----EEEEEEEE--H.......- CS
  Trp_halogenase 163 vaearGvtrvegkvvevqldedgrveslrled...greveadlfiDcsGfrgllieqaLktgfedw...sdvLltdrAlavqvesee.......l 244
                      a   Gv++++g  v+   d+ ++ve   ++     r++ ad ++ c G ++ +  + L ++++d     d+L++d  l  +ve+++       +
      KIR65883.1 114 GAALPGVRVLRGVEVTDLADHGDHVEVAAVDAdgtPRTFTADWVLGCDGANSFV-RRWLGATVTDLgfgYDWLVCDVVLNEPVEFKPnnlqicdP 207
                     45556999999988877777777776555443335689***********99875.5558999999744469********9999998877886666 PP

                     --SSEEEEE CS
  Trp_halogenase 245 vepytrata 253
                     ++p+t + a
      KIR65883.1 208 ARPRTAVSA 216
                     667776655 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.3e-05     0.059       1      27 [.       6      32 ..       6      36 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.3e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-S CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllek 27
                   IvG G  G vaA lLa++gf v+++ek
     KIR65883.1  6 IVGYGPVGQVAAILLAQRGFTVQVVEK 32
                   99************************8 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1    0.0001      0.18       1      30 [.       3      32 ..       3      36 .. 0.96
   2 ?   -2.2   0.0       1.1   1.9e+03      83     141 ..     101     159 ..      61     162 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLvee 30
                  Dv++vG gp G +AAi  a++G +v +ve+
    KIR65883.1  3 DVLIVGYGPVGQVAAILLAQRGFTVQVVEK 32
                  9***************************97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
  FAD_oxidored  83 tfepevakavleemlaeagvtvllntrlvevekegkriesvtveskeg.rktirAkvfiD 141
                   +++p   +a++    a +gv+vl + ++++    g+ +e   v + +g  +t++A+ ++ 
    KIR65883.1 101 FYQPGLEAALAARGAALPGVRVLRGVEVTDLADHGDHVEVAAV-DADGtPRTFTADWVLG 159
                   5555555666666667789999999999999998866655555.5565599999987765 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     7e-05      0.13       2      32 ..       3      33 ..       2      38 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 dv+++G G+ G  aAi +a+rg  V ++ek 
   KIR65883.1  3 DVLIVGYGPVGQVAAILLAQRGFTVQVVEKW 33
                 89***************************96 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00021      0.38       3      30 ..       4      31 ..       2      35 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00021
                    EEEE--STTHHHHHHHHHHCTSEEEEE- CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvD 30
                    + ++G G vG v a++la++g++v +v 
      KIR65883.1  4 VLIVGYGPVGQVAAILLAQRGFTVQVVE 31
                    789*********************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 3210.48
//
Query:       KIR65884.1  [L=295]
Description: methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-19   69.6   0.0    6.7e-19   68.4   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
    5.4e-19   68.6   0.0    1.1e-18   67.6   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    7.7e-16   58.2   0.0    1.1e-15   57.8   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    2.4e-13   50.0   0.0      3e-13   49.7   0.0    1.1  1  CMAS             Mycolic acid cyclopropane synthetase
    7.2e-13   48.4   0.0    1.4e-12   47.5   0.0    1.4  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    1.4e-07   32.2   0.0    2.9e-07   31.1   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
    8.7e-07   28.9   0.0    1.4e-06   28.3   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    9.5e-05   22.0   0.0    0.00021   20.9   0.0    1.4  1  MTS              Methyltransferase small domain
    0.00085   19.1   0.0     0.0026   17.4   0.0    1.7  1  UPF0020          Putative RNA methylase family UPF0020
     0.0012   18.8   0.0      0.002   18.0   0.0    1.4  1  Methyltransf_18  Methyltransferase domain
  ------ inclusion threshold ------
      0.076   13.0   0.0       0.12   12.3   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
      0.082   12.5   0.0       0.14   11.7   0.0    1.3  1  MetW             Methionine biosynthesis protein MetW
       0.16   11.8   0.0       0.38   10.6   0.0    1.6  2  Methyltransf_8   Hypothetical methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   4.8e-22   6.7e-19       1      97 []      80     176 ..      80     176 .. 0.95

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 4.8e-22
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEEST.GGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssga.lhhlsdedlekalkeiar 91 
                      vLd+G G G+  +a++++   akv+g+ ++++ +e+a++ra++egl  ++ef+ g+a +lpf+dg+fD vv+  + +h+++   + ++++e++r
       KIR65884.1  80 VLDVGFGYGDQDFAWLRERRVAKVHGINVTPRHVEHAQQRARREGLaeQAEFQLGNALALPFADGTFDRVVALESaFHFYP---RSAFFAEAFR 170
                      9*********99999888668***************************************************999888877...679******* PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                      vLkpgG
       KIR65884.1 171 VLKPGG 176
                      *****9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   8.1e-22   1.1e-18       1      95 [.      81     179 ..      81     180 .. 0.93

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 8.1e-22
                      EEET-TTSHHHHHHH..HTTSEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaeala..krgarvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkp 90 
                      LdvG G G    a+   +r+a+v g++++++ ++ a+++a++egl  + ef+ ++a  lpf+d++fD vv+ e+ +h+  ++++++e+ RvLkp
       KIR65884.1  81 LDVGFGYGDQDFAWLreRRVAKVHGINVTPRHVEHAQQRARREGLaeQAEFQLGNALALPFADGTFDRVVALESAFHFYPRSAFFAEAFRVLKP 174
                      8*****88877777644444***************************99*****************************9*************** PP

                      EEEEE CS
  Methyltransf_11  91 gGllv 95 
                      gG+l+
       KIR65884.1 175 GGTLA 179
                      **986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   7.9e-19   1.1e-15       4     112 ..      77     183 ..      74     245 .. 0.92

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 7.9e-19
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkilee 96 
                      + +vlD+G G G+  f++  + +  a+v+Gi  +++ +e+A+++a++ gl   +eF+ g++ +l+  ++d +fD +++ e   +++   +++ e
       KIR65884.1  77 DDTVLDVGFGYGDQDFAWL-RERRVAKVHGINVTPRHVEHAQQRARREGLAeQAEFQLGNALALP--FADGTFDRVVALESAFHFYPRSAFFAE 167
                      679****************.77889*************************99*************..*************************** PP

  Methyltransf_31  97 iervlkpggilliedp 112
                      ++rvlkpgg l+++d+
       KIR65884.1 168 AFRVLKPGGTLATADI 183
                      ***********99987 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   2.2e-16     3e-13      31     229 ..      45     243 ..      17     262 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 2.2e-16
                 -S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHH.HH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG---.. CS
        CMAS  31 YsCAyferddmtLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrrave.rydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedlde.. 126
                     y+e+  ++L+ A +a    + + ++ kp +t+Ld+G G+G       + r  +kv g+ +   + ++a++r  +++l++++e +l +   l+   
  KIR65884.1  45 MNVGYWEDGVTSLDVAGEALAMKLADAAGFKPDDTVLDVGFGYGDQDFAWLReRRVAKVHGINVTPRHVEHAQQRARREGLAEQAEFQLGNALALPFad 143
                 45679***************************************98776665145679*******************************9988775334 PP

                 .--SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EEEEEEEEE--HHHHH..CTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE-HHHH CS
        CMAS 127 .kvdrvvsvgafehvgkenydtffkklkkllkedGllllhtitslhkkela..erglklkfidkeiFPgGelpsieeieeeiseagftvvdveslrahY 222
                   +drvv+++   h+  +   +ff++++++lk++G+l+   i+ l+++++    +  +l+f++ +i P+ +       +e+ ++agf   dv+s++   
  KIR65884.1 144 gTFDRVVALESAFHFYPR--SAFFAEAFRVLKPGGTLATADIIPLSNDTARmsINSGPLSFVKFSI-PDENWHDRAVYAEQLTAAGFANADVQSIQD-- 237
                 6*********99998776..59*******************9988777655004455669999888.888888888888899999999999999985.. PP

                 HHHHHHH CS
        CMAS 223 akTLkaW 229
                  +T + W
  KIR65884.1 238 -RTWEGW 243
                 .455555 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   9.8e-16   1.4e-12      38     151 ..      67     180 ..      52     196 .. 0.89
   2 ?   -3.9   0.0       5.2   7.2e+03     198     219 ..     212     233 ..     207     235 .. 0.78

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 9.8e-16
                      HHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT-TTS-T-EEEEEEES-GGG-S CS
  Ubie_methyltran  38 fveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLpfeddsfDvvtvsfGlrnvt 130
                      ++ +  + k+  +vlDv  G gD  f+ +++ ++  kv+++++ +  ++ +++++++eg   + ef  +na +Lpf d++fD v        + 
       KIR65884.1  67 KLADAAGFKPDDTVLDVGFGYGDQDFAWLRE-RRVAKVHGINVTPRHVEHAQQRARREGLAeQAEFQLGNALALPFADGTFDRVVALESAFHFY 159
                      566778889999***************9987.5568***********************9989*******************998877888899 PP

                      -HHHHHHHHHHHEEEEEEEEE CS
  Ubie_methyltran 131 DklkaLkeayrvlkpGGrlvv 151
                       ++  + ea+rvlkpGG+l  
       KIR65884.1 160 PRSAFFAEAFRVLKPGGTLAT 180
                      9999*************9975 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 5.2
                      S--HHHHHHHHHHTTEEEEEEE CS
  Ubie_methyltran 198 fPdqetlkeliedaGfksveye 219
                      + d+  ++e +  aGf +++ +
       KIR65884.1 212 WHDRAVYAEQLTAAGFANADVQ 233
                      5677788888999999998866 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   2.1e-10   2.9e-07       1      99 []      81     178 ..      81     178 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 2.1e-10
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhlkdirevldnirklL 93 
                      L++G G G+  +a+l++ + ++++g+ + p+ +e+a+++ ++++    ++++l +     l+   ++fD vva++   h+ ++ ++++++ ++L
       KIR65884.1  81 LDVGFGYGDQDFAWLRERRVAKVHGINVTPRHVEHAQQRARREGLAEQAEFQLGNAL--ALPFAdGTFDRVVALESAFHFYPRSAFFAEAFRVL 172
                      89*************************************999998666666665555..4444457********7777777889********** PP

  Methyltransf_12  94 kpgGrl 99 
                      kpgG l
       KIR65884.1 173 KPGGTL 178
                      ****86 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   9.9e-10   1.4e-06      12     162 ..      67     229 ..      55     232 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 9.9e-10
  Methyltransf_23  12 klerllpklraggrvLdiGcGtG.illevlrengf.svtgvDlspeaveiae.......kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvp 96 
                      kl+ +++  +++  vLd+G G+G      lre+++ +v g+   p+ ve a+        a +a+++  ++   ++ +g+fd +v+ e+  h+ 
       KIR65884.1  67 KLADAAG-FKPDDTVLDVGFGYGdQDFAWLRERRVaKVHGINVTPRHVEHAQqrarregLAEQAEFQLGNALALPFADGTFDRVVALESAFHFY 159
                      4444444.68889**********8899999888766*********9999985444444433444444443445555777*************** PP

  Methyltransf_23  97 dppellrqiatllkpgGylllse..plaslkedrllldwlylvpagrhi..sffsarslkelleeaGlev 162
                      +  + ++ +++ lkpgG l   +  pl+++ +++++ + ++ + +      +++++  ++e+l +aG+ +
       KIR65884.1 160 PRSAFFAEAFRVLKPGGTLATADiiPLSNDTARMSINSGPLSFVKFSIPdeNWHDRAVYAEQLTAAGFAN 229
                      *******************999977788888888888877666664444668888888888888888875 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.5e-07   0.00021      15     136 ..      56     179 ..      53     182 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.5e-07
                 S--HHHHHHHHHCHCC....TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTT.TSTTS-EEEEEE--- CS
         MTS  15 klDkGsklLletlpke....lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvle.eveekkfdlivsNPP 106
                 +lD + + L+ +l ++     +++vlD+G G+G    a ++e   a+v+ ++v  r +e a++ +++++l+  +e+   ++l+  ++++ fd +v    
  KIR65884.1  56 SLDVAGEALAMKLADAagfkPDDTVLDVGFGYGDQDFAWLRERRVAKVHGINVTPRHVEHAQQRARREGLAeqAEFQLGNALAlPFADGTFDRVVA--- 151
                 689999999999999888888889*********************************************9999999999998835679****9996... PP

                 STTTCHCHHHHHHHHHHHHHHHEEEEEEEE CS
         MTS 107 fhagkatelavaeeliaeAkeaLkegGeLl 136
                    ++a +     +++aeA ++Lk+gG+L 
  KIR65884.1 152 --LESAFHFYPRSAFFAEAFRVLKPGGTLA 179
                 ..445555667799*************996 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.9e-06    0.0026      72     126 ..      96     150 ..      62     151 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.9e-06
                 HHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEE CS
     UPF0020  72 earaelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdviv 126
                 ++r+ +k+ g++  +r+v+ a++ a++ g++++ ef+  +a +L+ ++g +d +v
  KIR65884.1  96 RERRVAKVHGINVTPRHVEHAQQRARREGLAEQAEFQLGNALALPFADGTFDRVV 150
                 5667889**************************************99999**998 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.5e-06     0.002      10      77 ..      73     139 ..      64     151 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.5e-06
  Methyltransf_18  10 slvekgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGlek 77 
                       + +++++v+D+G   g  +++ ++e+++ kv+ +++ +  +e+a++ ++++gl ++ e+ l++ l+ 
       KIR65884.1  73 GF-KPDDTVLDVGFGYGDQDFAWLRERRVAKVHGINVTPRHVEHAQQRARREGLAEQAEFQLGNALAL 139
                      44.45899********************************************************9975 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     9e-05      0.12      24      85 ..      75     132 ..      62     139 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9e-05
  Methyltransf_32  24 sgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfa 85 
                      +++ tv+DvG G g   f+    e +   kv+gi++  ++ve+a++ra++ g  ++++ +f+
       KIR65884.1  75 KPDDTVLDVGFGYGDQDFAWLR-E-RRVAKVHGINVTPRHVEHAQQRARREG--LAEQAEFQ 132
                      56789*******9999999888.2.3579********************999..76666665 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0001      0.14      12      80 ..      75     150 ..      70     172 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
        MetW  12 kpgsrvldlGcGdGel.lellkeekqvdgrGleldeegvaecvak....Glsv.iqgdldkdlen.fedksfdyvv 80 
                 kp  +vld+G G G+  + +l+e++  + +G+++  + v ++ ++    Gl+   + +l + l+  f+d +fd vv
  KIR65884.1  75 KPDDTVLDVGFGYGDQdFAWLRERRVAKVHGINVTPRHVEHAQQRarreGLAEqAEFQLGNALALpFADGTFDRVV 150
                 68899*******9975489******99************9998872222443202334444454358888888776 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.7   6.4e+03      78     102 ..      84     109 ..      74     114 .. 0.66
   2 ?   10.6   0.0   0.00028      0.38     116     159 ..     139     183 ..     127     206 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.7
                     EES-TT-HHH.HH--S-..EEEEESS CS
  Methyltransf_8  78 dlGcGeakia.eavrekekvrsfdlv 102
                      +G G+   a  + r+  kv+ ++++
      KIR65884.1  84 GFGYGDQDFAwLRERRVAKVHGINVT 109
                     35677888886677888888877665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00028
                     -S--TT-EEEEEEES---S.S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Methyltransf_8 116 vPledesvdvavfclslmg.tnladflkeanrvlkvGGllkvaev 159
                     +P +d++ d +v   s         f  ea rvlk+GG l  a++
      KIR65884.1 139 LPFADGTFDRVVALESAFHfYPRSAFFAEAFRVLKPGGTLATADI 183
                     79999999988888776651456689***************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1887.95
//
Query:       KIR65885.1  [L=252]
Description: oleoyl-ACP hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-53  181.8   0.0    2.4e-53  181.6   0.0    1.0  1  Thioesterase   Thioesterase domain
      2e-09   38.4   6.9    2.8e-09   37.9   6.9    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
      3e-05   23.8   0.0       0.11   12.1   0.0    2.2  2  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.074   12.3   0.0    1.9  2  Hydrolase_4    Serine aminopeptidase, S33
       0.07   12.7   0.0       0.88    9.1   0.0    2.0  2  DLH            Dienelactone hydrolase family
       0.11   12.2   0.0       0.22   11.2   0.0    1.4  1  FSH1           Serine hydrolase (FSH1)


Domain annotation for each model (and alignments):
>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.6   0.0   8.1e-57   2.4e-53       1     230 [.      21     245 ..      21     246 .. 0.96

  Alignments for each domain:
  == domain 1  score: 181.6 bits;  conditional E-value: 8.1e-57
                   EEEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST..SHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHC.T-SE CS
  Thioesterase   1 rpLflfppagGsasvfrslasklsdpvvevlavqlpgre..rdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesq.Glav 94 
                   r+L+++p+agGsas++   +++ls+ +vevla+q+pgr+  r+ep+++++ ela +++  lr+  ++ P+a+fGhS+G++l fevAr  e++ G   
    KIR65885.1  21 RRLVCLPHAGGSASFYFPVSRALSP-AVEVLAIQYPGRQdrRQEPCVDNLPELARQVFGVLRPWLDQ-PLAIFGHSMGATLGFEVARLIEAEtGASA 115
                   68***********************.5****************************************.***************************** PP

                   EEEEEESCCCCCCHHCHHCCCHTTHHTHHHHHCCTTHHHCCTTTHCCHHHHHHHHHHHHHHHHHTCCS-TTSCSEHHCEEEEEEGSS-CTCCCCCCC CS
  Thioesterase  95 kslflidssapseteaqeasrraedeefveeltdlggtepeelledeellsellpalradyraleqyslrpeaaqklratlfngsddklkdldtlel 191
                   ++lf ++  aps   ++e  +  +de ++++ ++l gt + ++l d+e+l+  lpa+r dyra e+y+  p  +  +++t+f g+ d+++++d   +
    KIR65885.1 116 AHLFPSGRRAPSC-PRHETVHLLDDEGLLADVRRLSGT-NSAVLGDPEMLRAALPAIRNDYRAAETYEYTPGPKLGCPVTVFTGDADPKTTVD---E 207
                   *************.999999*999999***********.*****************************7777777799***************...5 PP

                   HCHCHCTCESCEEEEEESSHCCHHHSHHHHHHHHHHHHH CS
  Thioesterase 192 aerweqktsgevsvhvlegdhfylledrleavleiiekk 230
                   a  we++t+g+++++v++g+hf+l + +++a+l++i+++
    KIR65885.1 208 ARAWERHTTGAFDLQVFPGGHFFLAQ-HQPAILRTISAA 245
                   555**********************8.*********986 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   6.9   9.3e-13   2.8e-09       2     212 ..      24     233 ..      23     240 .. 0.58

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 9.3e-13
                    EEE.--GC.....GCHHHHHHHHCCTCEEEEE--TTS..TS-GGCS--HHHCHHH..HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC..EEEE CS
  Abhydrolase_6   2 lll.HGagssassWlvapLaallaagvhvlapDlpGh..Grsdpppldledladl..aalldelaagggpvvlvGHSlGGalalaaaplalvvgvl 92 
                    ++l H++g sas ++  p+ ++l+  v+vla+++pG    r++p  ++l++la++    l   l   + p  ++GHS+G++l+ +   +a     l
     KIR65885.1  24 VCLpHAGG-SASFYF--PVSRALSPAVEVLAIQYPGRqdRRQEPCVDNLPELARQvfGVLRPWL---DQPLAIFGHSMGATLGFE---VA----RL 106
                    67756644.455567..**999999************422334444555443222255555555...6888**************...88....88 PP

                    ES-..----TTTS----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHH.......C....CCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEE. CS
  Abhydrolase_6  93 ldppptalpagllaaalelllallallrllawlsreplprlfladed.......a....daawrarlarlaallaglgllpaaawadlpvpllvl. 176
                    +++    ++a+ ++ +++  +a+  +++  + + +  +++++lad+        a     +  ra+l + +    + +++ +++ + l +p+ v+ 
     KIR65885.1 107 IEA---ETGASAAHLFPSGRRAPSCPRHE-TVHLL--DDEGLLADVRrlsgtnsAvlgdPEMLRAALPAIRNDYRAAETYEYTPGPKLGCPVTVFt 196
                    888...44444433333333333333333.33331..33344444443322222233323444444444444444555667888888888886655 PP

                    CTT-C....HHHHCHHCCCHSTTEEETCE...SSS-HHHH CS
  Abhydrolase_6 177 ggeDp....lvprllerllaqagarlpvvlpgaGHlphle 212
                    g++Dp      +r +er+ +   ++l +v+p +GH+++ +
     KIR65885.1 197 GDADPkttvDEARAWERHTT-GAFDL-QVFP-GGHFFLAQ 233
                    67777777766677777777.88888.7777.99976653 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00015      0.44      67      92 ..      80     105 ..      23     110 .. 0.78
   2 !   12.1   0.0   3.8e-05      0.11     209     255 ..     187     233 ..     123     235 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00015
                    HHHCTTSSEEEEEETHHHHHHHHHHH CS
  Abhydrolase_1  67 ldalgddkltlvGhSmGGmialayaa 92 
                    l +  d++l++ GhSmG ++++++a 
     KIR65885.1  80 LRPWLDQPLAIFGHSMGATLGFEVAR 105
                    6777789999************9985 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.8e-05
                    HHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 209 nvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafle 255
                    +  +p+ v+ g+ Dp ++ ++ + +++++ +++ ++++++gH+ + +
     KIR65885.1 187 KLGCPVTVFTGDADPKTTVDEARAWERHTTGAFDLQVFPGGHFFLAQ 233
                    4568**************************************98766 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.5e-05     0.074      71      95 ..      81     105 ..      60     121 .. 0.80
   2 ?   -0.0   0.0      0.14   4.3e+02     187     218 ..     185     216 ..     155     228 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.5e-05
  Hydrolase_4  71 eehpelplfllGhSmGGliallyll 95 
                  +++ ++pl ++GhSmG+++ ++++ 
   KIR65885.1  81 RPWLDQPLAIFGHSMGATLGFEVAR 105
                  467789************9998874 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.14
  Hydrolase_4 187 aakitlPllllhGeaDkvvdpeasrelyerlg 218
                   +k+  P+ ++ G+aD+ +  +++r+  ++ +
   KIR65885.1 185 GPKLGCPVTVFTGDADPKTTVDEARAWERHTT 216
                  567779**********9888777766555544 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.068     2e+02      99     121 ..      87     109 ..      76     128 .. 0.80
   2 ?    9.1   0.0    0.0003      0.88     141     195 ..     186     236 ..     174     249 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.068
         DLH  99 kvgvvGfCmGGalalllaaevpe 121
                  +++ G  mG++l +++a+  ++
  KIR65885.1  87 PLAIFGHSMGATLGFEVARLIEA 109
                 57999*************98832 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0003
         DLH 141 akikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsre 195
                 +k+ +p+ ++ g++D+  + de+   e  +     +++l+v+p  gH F++++++
  KIR65885.1 186 PKLGCPVTVFTGDADPKTTVDEARAWERHT---TGAFDLQVFP-GGHFFLAQHQP 236
                 6889*****************999888887...6789******.79***999876 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.3e-05      0.22     106     202 ..      90     230 ..      84     236 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.3e-05
        FSH1 106 iiGFSqGaalaallaslleellkeashpslkfailvsGfkleepk..............................................yeeyy... 155
                 i G S Ga+l+  +a l+e     +        ++ sG ++++                                                 +e+y   
  KIR65885.1  90 IFGHSMGATLGFEVARLIEAETGAS-----AAHLFPSGRRAPSCPrhetvhllddeglladvrrlsgtnsavlgdpemlraalpairndyrAAETYeyt 183
                 7888999999999988888766533.....455667776664443566667777777777777777777777777777888888877775533344346 PP

        FSH1 156 eedkiqtptLhvlGelDtvvdeerseaLaeafknsskvlkHpggHfv 202
                   +k+ +p+  + G++D   + ++++a  ++++   ++  +pggHf+
  KIR65885.1 184 PGPKLGCPVTVFTGDADPKTTVDEARAWERHTTGAFDLQVFPGGHFF 230
                 89999**************9999***********9**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1987.31
//
Query:       KIR65886.1  [L=1851]
Description: beta-ketoacyl synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-87  291.2   2.4    8.1e-87  291.0   0.6    2.0  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
      2e-58  197.3   0.7      1e-57  195.0   0.9    2.2  2  KR               KR domain
    3.6e-58  197.6   0.2    5.8e-58  196.9   0.2    1.3  1  Acyl_transf_1    Acyl transferase domain
    1.7e-54  185.1   9.2      4e-54  183.9   9.2    1.7  1  PS-DH            Polyketide synthase dehydratase
    7.4e-45  151.8   0.6    1.8e-44  150.6   0.6    1.7  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    8.7e-16   58.4   0.0    1.6e-15   57.5   0.0    1.5  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    7.6e-14   51.8   0.0    2.9e-13   50.0   0.0    2.1  1  PP-binding       Phosphopantetheine attachment site
    5.1e-11   42.0  12.5    5.1e-11   42.0  12.5    2.5  2  Docking          Erythronolide synthase docking
    5.3e-11   42.3   0.1    1.3e-10   41.0   0.0    1.8  2  adh_short        short chain dehydrogenase
    1.5e-08   34.3   0.1    6.2e-08   32.3   0.1    2.0  2  Thiolase_N       Thiolase, N-terminal domain
    5.8e-07   29.3   0.0    1.6e-06   27.9   0.0    1.7  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    0.00029   20.4   0.1    0.00049   19.6   0.1    1.3  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0041   16.9   0.8      0.016   15.0   0.8    2.1  1  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
  ------ inclusion threshold ------
       0.03   13.7   0.0      0.047   13.1   0.0    1.2  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
       0.04   13.0   0.0      0.061   12.5   0.0    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.0   0.6   6.8e-90   8.1e-87       2     253 .]      35     285 ..      34     285 .. 0.98
   2 ?   -1.7   0.0       1.5   1.7e+03      95     136 ..     321     362 ..     319     424 .. 0.61

  Alignments for each domain:
  == domain 1  score: 291.0 bits;  conditional E-value: 6.8e-90
                    --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllle 94 
                    +p+aivGm++rfPgg + ++++w+l+ +++da++++padr wd ++l+dp+++ +g++ +  ggf++ + dfdp+ffgisprea amdpqqrllle
     KIR65886.1  35 QPIAIVGMACRFPGGITsPDALWDLVAASGDAVGPFPADRgWDLTDLHDPTRERPGTSCVAEGGFVHdAGDFDPRFFGISPREALAMDPQQRLLLE 130
                    59**************99****************************************************************************** PP

                    HHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt  95 aawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslr 190
                    ++wea+e+ag++p+ l+g rvgvf+G+++gdyaa a+  +dg  v ++   +g+ + ++ +gr++yalg++Gp+vtvdtACsSslva+h+a qslr
     KIR65886.1 131 VSWEAFESAGIDPTGLRGGRVGVFAGLTHGDYAAGATDVPDG--VVDYL-GLGN-AGSISSGRVAYALGFEGPAVTVDTACSSSLVALHLAAQSLR 222
                    ********************************9988988888..68888.9999.***************************************** PP

                    TTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    sge+d+alaGGv+++ tp  ++ f ++g ls + rckaf+++adG+ l+EGvG+++++rl+da
     KIR65886.1 223 SGESDLALAGGVTVMPTPAVFVDFTRQGNLSMSARCKAFADGADGTALAEGVGILLVERLDDA 285
                    ****************************99999***************************997 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.5
                    HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHT CS
  ketoacyl-synt  95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedg 136
                    + ++al++a l+p+++d  +   +g ++G  ++ +a   +l  +g
     KIR65886.1 321 VIRQALASARLSPADVDVVEahgTGTTLGDPIEAQA---LLATYG 362
                    67899********99944444459999888888552...233233 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       9.4   1.1e+04     126     155 ..     602     631 ..     600     636 .. 0.83
   2 !  195.0   0.9   8.5e-61     1e-57       1     179 [.    1409    1587 ..    1409    1588 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 9.4
                 S--SEEEEEEEHHHHH--TT-HHHHHHHHH CS
          KR 126 esldffvlfSSiagllgsagqanYaaaNaf 155
                 ++l  +v+ S  + l g   q+ Y+ a  f
  KIR65886.1 602 RPLREVVFASPGSDLAGLLDQTVYTQAGLF 631
                 67777888888999**********999776 PP

  == domain 2  score: 195.0 bits;  conditional E-value: 8.5e-61
                  SEEEEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR    1 gtylitGGlGgLGlelarwlaekg.arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96  
                  gt+l+tG++G LG  lar+l+  +  rhl+l +R++   + +++l+ael++lga+ ++va+Dv+d+d+v+all+++ ae+ p++Gv+haAgvl+d++
  KIR65886.1 1409 GTVLVTGATGTLGGLLARHLVTAHkVRHLLLAGRRGGDAPGAADLLAELTRLGAHARFVACDVADRDQVAALLATVAAEH-PLTGVVHAAGVLDDAT 1504
                  89*******************87769**************************************************8666.**************** PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  ++ +t e+++++l+pK ++aw+Lh l+++ +l +fvlfSSiag lg +gq+nYaaaNaflD+la++rr+ gl+a+s++wglw+
  KIR65886.1 1505 VTALTPERIAAALRPKADAAWHLHDLTRHLDLPMFVLFSSIAGPLGGPGQGNYAAANAFLDGLAQHRRAAGLAATSLAWGLWE 1587
                  **********************************************************************************7 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.9   0.2   4.8e-61   5.8e-58       3     317 ..     563     877 ..     561     879 .. 0.97

  Alignments for each domain:
  == domain 1  score: 196.9 bits;  conditional E-value: 4.8e-61
                    EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHH CS
  Acyl_transf_1   3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGE 94 
                    +f+GqG+Q  GMG+eL++  +++a++ +r    f+   +  + +v+ + p     glld+++ +q +L+a+++al ell s+Gv+ + +vGHS+GE
     KIR65886.1 563 LFTGQGAQRSGMGRELYDRFPVYAEAFDRVCALFAGRLDRPLREVVFASPGsdlaGLLDQTVYTQAGLFALEVALHELLASFGVTADYLVGHSIGE 658
                    7*************************************************99999***************************************** PP

                    HHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS.HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECCCEEC CS
  Acyl_transf_1  95 lAaavvagalsseeallavvlrsrlmmqlagpgdmaavelaeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalvenvnvav 190
                    + aa+vag ls+e+a   v+ r+ lm+ l   g+m+av+ ae e ++   d v +a++n+pr vv+sg+ + l+ + +r++++g +a++  v+ a+
     KIR65886.1 659 VTAAHVAGVLSLEDACALVAARGSLMQALPAGGGMLAVGAAEAEVRALAGDGVDVAAVNGPRAVVLSGPVADLDVIAQRCAERGWRAKRLSVSHAF 754
                    ************************************************************************************************ PP

                    TTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCH.HHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCHHGGG- CS
  Acyl_transf_1 191 hspqvdaiadalasaladiaprkpkvakisstsldesserel.saeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlksaedv 285
                    hs+ ++++  + +  la +  ++p+++  s ++ + ++++e+ s +ywv+ +r++vrf + ++ +   +   fve+ p ++l+a   +t  +    
     KIR65886.1 755 HSRLMEPMLAEFRTVLAGLDWQTPRLPIVSNLTGRVAEAGEItSPDYWVRHVREAVRFGDSITTLHGLGVTSFVEVGPDATLTAMAADTPVD---- 846
                    ***********************************99877752789*************************************999888774.... PP

                    TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT- CS
  Acyl_transf_1 286 ksatlvGklkrdltdflvtflyllakahltgs 317
                     +  lv  l+rd+ + +     +la++h+tg 
     KIR65886.1 847 RPVHLVAALRRDQSE-ATGIVNALARLHVTGT 877
                    88899999*******.**************96 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.9   9.2   3.4e-57     4e-54       1     296 [.     928    1200 ..     928    1202 .. 0.88

  Alignments for each domain:
  == domain 1  score: 183.9 bits;  conditional E-value: 3.4e-57
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hpll +++ sa+d+ +++  rl+++ +pwL+DH+v g+vv+Pg++ +e+al A++q++    + +l ++++ ++lvlpe++++ vqlsl + +++  
  KIR65886.1  928 HPLLTAELVSADDDTRLYGGRLSVRTQPWLADHVVWGSVVVPGTALVELALHAGAQAA----CDTLAELTLAAPLVLPEQGARAVQLSLAAPDEHG- 1019
                  9*********************************************************....666************************9995544. PP

                  ....EEEEEEE-SS-TT...EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE--- CS
       PS-DH   98 rawvefeifSregggee..wtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealaelrlp 192 
                    + +  i+Sr +++ +  wt+ha G ++ + +a+   ++l+++     +pa++++v+++ +Y +l++ g+++Gp+F+glra+wr+++++lae++lp
  KIR65886.1 1020 --RRRLAIHSRPADDPHgdWTRHADGLLAPGGDAP---EALTEW-----PPADATAVPVEPIYAQLHRLGVDHGPTFRGLRAAWRTPDAVLAEVALP 1106
                  ..369******99999999**********776666...566666.....455555577777************************************ PP

                  GGGSSTTTT-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEESEEEE CS
       PS-DH  193 eelaggesayvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieglrlr 289 
                  + +a++   + lhPallDaal++++++  ++a+++  a+lP+a++ +++      +  +l+v+++++++     ++ ltl d +G +va+++ l  r
  KIR65886.1 1107 DGVAADG--FGLHPALLDAALHVVGLTDADDADETAGARLPFAWSGVALAA---VGATHLRVRVTRAGS-----AVTLTLADGTGAPVARVDSLVSR 1193
                  ****765..*************776666578999***************97...344446666666544.....799******************** PP

                  E--XXXX CS
       PS-DH  290 rvereal 296 
                  +v++++l
  KIR65886.1 1194 PVGADQL 1200
                  **99876 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6   0.6   1.5e-47   1.8e-44       1     117 [.     293     408 ..     293     409 .. 0.98

  Alignments for each domain:
  == domain 1  score: 150.6 bits;  conditional E-value: 1.5e-47
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      +av++gsavn+dga+n+ltapng +q+r+i++ala+a+++p+dvd+veahgtgt+lgDpiE++al +++g+++ + pl +gS+Ksn+GH +aAa
       KIR65886.1 293 LAVVRGSAVNQDGASNGLTAPNGPSQQRVIRQALASARLSPADVDVVEAHGTGTTLGDPIEAQALLATYGQGR-ETPLLLGSIKSNLGHPQAAA 385
                      69*********************************************************************99.88****************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      Gva++ik+v+a++hg +p+tl++
       KIR65886.1 386 GVAGVIKMVQAMRHGLVPATLHV 408
                      **********************8 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   1.4e-18   1.6e-15       1     110 [.     411     525 ..     411     527 .. 0.92

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 1.4e-18
  KAsynt_C_assoc   1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeeskeeslprL.lvlsgrteeaveallekleehlldael 90 
                     P+++++ +++g + + teptpwp       ++v+sfG++G+n+Hvi+++++ ++++++++  +lp + +++s+rt++a+  ++ +l+ h ++++ 
      KIR65886.1 411 PSSKVD-WSSGAVALATEPTPWPAADrprrAAVSSFGISGTNAHVIVEQAEPANAEPTAP-VRLPVVpWLVSARTADALAGQAGRLAGHVRERSG 503
                     8999**.***************99888999**********************99999999.5555443899************************ PP

  KAsynt_C_assoc  91 lsllneilseeisr..lpyRGy 110
                     ls ++   s ++sr  l++R+ 
      KIR65886.1 504 LSPVDVGWSLATSRaaLEHRAV 525
                     *********9999999999976 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   2.4e-16   2.9e-13       3      67 .]    1697    1762 ..    1695    1762 .. 0.92

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 2.4e-16
  PP-binding    3 lrelvaevlgvplee.idpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  ++  vaevlg ++ + ++p +++ +lG+DSl+av+l ++l ++ g+++p + +f+hpt+++l+ +l
  KIR65886.1 1697 VTGQVAEVLGYATAAaVAPGQSFTELGFDSLTAVDLRNRLTARTGLTLPATLVFDHPTPEALTGHL 1762
                  66779******7777478********************************************9997 PP

>> Docking  Erythronolide synthase docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0  12.5   4.2e-14   5.1e-11       2      26 .]       4      28 ..       3      28 .. 0.96
   2 ?   -1.7   0.1       1.9   2.3e+03      17      26 .]    1284    1293 ..    1284    1293 .. 0.83

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 4.2e-14
     Docking  2 nEeKLRdYLKRvTaDLrqtRrRLrE 26
                +EeKLR+YLKRvT+DLr+tR+RLr+
  KIR65886.1  4 TEEKLREYLKRVTTDLRRTRQRLRD 28
                8***********************7 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.9
     Docking   17 LrqtRrRLrE 26  
                  L  tR RL++
  KIR65886.1 1284 LDATRARLAD 1293
                  668*****86 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   1.1e-13   1.3e-10       2     162 ..    1410    1570 ..    1409    1594 .. 0.85
   2 ?   -4.1   0.1       7.3   8.7e+03      22      71 ..    1788    1835 ..    1785    1837 .. 0.77

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 1.1e-13
                  EEEEESTTSHHHHHHHHHHHHTT.-EEEE.EESCHHH...HHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    2 vvlvtGassGIGraiakelakeG.akvvv.vdrseek...leevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                  +vlvtGa++ +G  +a++l+++  +++++ ++r+  +   ++ +++el ++ga+a ++++Dv+dr++v al++++++++ +l  +v+ AG+  ++++
  KIR65886.1 1410 TVLVTGATGTLGGLLARHLVTAHkVRHLLlAGRRGGDapgAADLLAELTRLGAHARFVACDVADRDQVAALLATVAAEH-PLTGVVHAAGVLDDATV 1505
                  79*****************98752455554778766511256677777777************************8875.8**************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrs 162 
                    l+ e++ + +     ++ +l  + +++++       v  sS+ag  + +g+  Y+A+ a+++gl++ 
  KIR65886.1 1506 TALTPERIAAALRPKADAAWHLHDL-TRHLD---LPMFVLFSSIAGPLGGPGQGNYAAANAFLDGLAQH 1570
                  ******************9998766.77765...7789*********************9999999875 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 7.3
                  HTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHH CS
   adh_short   22 keGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealveka 71  
                  +  a+ ++ ++  ee+ ++va+ l+++   ++ + +D  d + v +++++a
  KIR65886.1 1788 ATPAEALAeLAADEETRAAVAARLRAL---LTRWDGDSGDTAGVAQVIDDA 1835
                  555666666788888899999999987...888889998888888888776 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.1   5.2e-11   6.2e-08      58     116 ..     182     238 ..     164     259 .. 0.85
   2 ?   -3.6   0.0       4.6   5.5e+03     111     162 ..    1723    1775 ..    1719    1805 .. 0.69

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 5.2e-11
                 STSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEEST CS
  Thiolase_N  58 egqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsms 116
                 +g++ +  +a ++g+  e pavtv+ +csS+l a++laaqs+++ge+d ++agGv  m 
  KIR65886.1 182 AGSISSGRVAYALGF--EGPAVTVDTACSSSLVALHLAAQSLRSGESDLALAGGVTVMP 238
                 566666678888898..99************************************8885 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.6
                  EEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEE.TTTTSEHHHHHHHH CS
  Thiolase_N  111 GvEsmsnaptaestdvrsglklgdekakdllipdglad.afneehmGltaenl 162 
                  G  s+++++ +++ ++r+gl+l+++ + d+  p++l+   +++   G +a +l
  KIR65886.1 1723 GFDSLTAVDLRNRLTARTGLTLPATLVFDHPTPEALTGhLMTQLGPGRSAPTL 1775
                  77788888888888888888888888888888887764134444444444444 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.3e-09   1.6e-06      34     152 ..    1454    1568 ..    1443    1579 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.3e-09
                    HHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEE CS
  adh_short_C2   34 veelaeelgae..vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalplmkeggsivnl 126 
                    ++el++ lga+  +++cDV+d++qv+al ++v++++  l ++v++ag+ ++  + ++ ++ e ++ al  ++ ++++l    ++l       v  
    KIR65886.1 1454 LAELTR-LGAHarFVACDVADRDQVAALLATVAAEH-PLTGVVHAAGVLDD--ATVTALTPERIAAALRPKADAAWHLHDLTRHLDL--PMFVLF 1542
                    455554.5655246*******************997.8*************..************************9998887644..5799** PP

                    EEGGGTSBSTTTTHHHHHHHHHHHHH CS
  adh_short_C2  127 ssvgaervvpnynaygaaKaalealt 152 
                    ss+++  + p++  y+aa a l +l+
    KIR65886.1 1543 SSIAGPLGGPGQGNYAAANAFLDGLA 1568
                    *******************9999986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   4.1e-07   0.00049       1      87 [.    1411    1513 ..    1411    1559 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.1e-07
                  EEEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTTTCHHCHHC...........EEEE--TT-HHHHHHHHH....HHT-SEEEE--S.---HHH CS
   Epimerase    1 ilVtGatGfiGsalvkallekg.ye.vigldrlssasntarledl...........elveldltdrsalerlfk....eeqpdavihlAa.vggvaa 79  
                  +lVtGatG +G  l+++l +++ ++ ++   r+  +++ ++ + l           ++v +d+ dr+++++l++    e+  + v+h+A+   +  +
  KIR65886.1 1411 VLVTGATGTLGGLLARHLVTAHkVRhLLLAGRR-GGDAPGAAD-LlaeltrlgahaRFVACDVADRDQVAALLAtvaaEHPLTGVVHAAGvLDDATV 1505
                  79****************999974424444444.333333333.33678******************77776651111556778****997766666 PP

                  HHHSHHHH CS
   Epimerase   80 ssedpadf 87  
                  ++ +p+++
  KIR65886.1 1506 TALTPERI 1513
                  66666554 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.8   1.4e-05     0.016       3      63 ..     203     272 ..     201     281 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.4e-05
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGG...CS-TTT......HHHHTTB-EEEEEEEEEE CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlsk...ilDwkd......rstavlfGDGAgAvvlea 63 
                  + +aCs+ ++al++A++ ++sg+   +L  g  ++     ++D+++      ++ +  f+DGA ++ l +
   KIR65886.1 203 VDTACSSSLVALHLAAQSLRSGESDLALAGGVTVMPTpavFVDFTRqgnlsmSARCKAFADGADGTALAE 272
                  5689************************98888876555599*98433455588899******9888765 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.9e-05     0.047       1      75 [.    1412    1485 ..    1412    1498 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.9e-05
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevq 75  
                     L+TG +G  G  la++L++ +   h +       ++   + l  +  ++l  + +++ +D+ D++++  lla v 
     KIR65886.1 1412 LVTGATGTLGGLLARHLVTAHKVRHLLLAGRRGGDAPGAADLLAE-LTRLGAHARFVACDVADRDQVAALLATVA 1485
                     9*******************9999998887777776666665543.3467899****************999875 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.1e-05     0.061       1      85 [.    1411    1497 ..    1411    1506 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.1e-05
                       EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT......T-SEEEE-- CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekalee....lkvdvvfhaA 85  
                       vlvtGa+G++G  l r++++  k+++++l  r        ++ l +el+  +l ++   v +dv+d+++++ +l +    +    v+haA
       KIR65886.1 1411 VLVTGATGTLGGLLARHLVTAhKVRHLLLAGRRGGDAPGAADLL-AELT--RLGAHARFVACDVADRDQVAALLATvaaeHPLTGVVHAA 1497
                       89***************99877999****999988877766655.3333..45556667899*****99988776511114455688888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1851 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.92u 0.28s 00:00:01.20 Elapsed: 00:00:00.45
# Mc/sec: 12283.28
//
Query:       KIR65887.1  [L=4637]
Description: hypothetical protein TK50_11365 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.9e-264  872.4  23.1    1.2e-89  300.2   1.1    5.1  5  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
   8.7e-177  587.3   6.7    4.5e-59  200.5   0.1    3.4  3  Acyl_transf_1    Acyl transferase domain
   1.1e-168  556.6  21.2      1e-56  191.7   1.4    4.6  4  KR               KR domain
   3.4e-137  449.6  14.4    4.1e-45  152.6   1.1    4.5  3  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    5.5e-46  155.6   0.0    6.1e-15   55.6   0.0    3.5  3  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    1.7e-40  138.5   7.9    9.4e-14   51.3   0.8    3.8  3  adh_short        short chain dehydrogenase
    6.4e-40  135.4   0.4    5.7e-12   45.8   0.0    4.1  3  PP-binding       Phosphopantetheine attachment site
    4.7e-27   95.0   3.9    3.8e-08   33.0   0.2    4.6  4  Thiolase_N       Thiolase, N-terminal domain
    1.3e-21   76.9  22.0    8.1e-13   48.7   6.3    8.3  4  PKS_DE           Polyketide synthase dimerisation element dom
    2.8e-21   76.2  17.1    2.1e-07   30.8   1.9    4.2  4  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    9.8e-15   54.7   8.0    6.9e-07   29.0   0.1    3.4  3  Epimerase        NAD dependent epimerase/dehydratase family
      2e-14   53.4   0.0     0.0021   17.3   0.0    3.2  3  Polysacc_synt_2  Polysaccharide biosynthesis protein
    5.9e-12   45.6   0.0       0.01   15.3   0.0    3.2  3  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    3.4e-09   36.2   2.6    9.9e-09   34.7   2.6    1.9  1  Docking          Erythronolide synthase docking
    2.1e-06   27.5  13.8      0.017   14.7   0.5    3.6  3  NmrA             NmrA-like family
    5.8e-06   26.1   7.5       0.95    9.4   0.2    4.1  3  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    4.2e-05   23.0   4.0          1    8.7   0.1    3.7  3  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
  ------ inclusion threshold ------
       0.01   15.0  14.0       0.13   11.3   1.5    3.4  3  RmlD_sub_bind    RmlD substrate binding domain
       0.34   10.6   9.9         63    3.2   0.0    6.1  7  SAT              Starter unit:ACP transacylase in aflatoxin b
       0.69   10.5   7.2        4.4    8.0   0.1    3.9  3  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.8   0.2   3.1e-91   2.8e-88       2     253 .]      34     284 ..      33     284 .. 0.96
   2 !  300.2   1.1   1.3e-92   1.2e-89       2     253 .]    1521    1771 ..    1520    1771 .. 0.97
   3 ?   -3.4   0.3       6.4   5.7e+03      95     137 ..    2811    2852 ..    2805    2872 .. 0.73
   4 !  288.8   2.0   4.1e-89   3.7e-86       2     253 .]    3037    3283 ..    3036    3283 .. 0.95
   5 ?   -0.0   0.0      0.59   5.3e+02      95     148 ..    3319    3373 ..    3317    3398 .. 0.63

  Alignments for each domain:
  == domain 1  score: 295.8 bits;  conditional E-value: 3.1e-91
                    --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllle 94 
                    ep+aivGm++r+Pgg+  +e++wel+ +g d+i+ +p+dr wd+d+ ydp+ +  g ++++ ggfl+ + dfdpe+f++sp ea amdpqqrl+le
     KIR65887.1  34 EPIAIVGMSCRYPGGVRsPEQLWELVATGTDGITGFPTDRgWDTDAAYDPTGQRRGSTYAREGGFLHdAGDFDPELFKVSPYEALAMDPQQRLMLE 129
                    89*************999****************************************************************************** PP

                    HHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt  95 aawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslr 190
                    a+wea+eda ++p +l+gsrvgvf+G+++++yaa  a  +++   +a+    g ++++v++gr++y++g++Gp++tvdtACsSslva+h+avqslr
     KIR65887.1 130 ASWEAIEDARIDPLSLRGSRVGVFAGMMYHNYAAGLAEVPET--LDAFI-GGG-TASSVLSGRVAYTFGFEGPALTVDTACSSSLVALHLAVQSLR 221
                    ********************************7755555443..56666.555.5***************************************** PP

                    TTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    sge+ +alaGGv++++t e+++ fs+++ l+pdgrck+f+++adG+ ++EGvG+++++rl+da
     KIR65887.1 222 SGECTLALAGGVTVMTTLETFVDFSRQRGLAPDGRCKSFAEGADGTGWSEGVGMLLVERLSDA 284
                    *************************************************************98 PP

  == domain 2  score: 300.2 bits;  conditional E-value: 1.3e-92
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     +p++ivGmg+rfP g + +eefw+lL +g da+s++p+dr wd ++l++p++  +g +++ +g+fl+ + +fd+ ffgisprea amdpqqrll
     KIR65887.1 1521 DPIVIVGMGCRFPAGAGsPEEFWRLLADGVDAMSDFPTDRhWDLTALHHPDPGHPGASYVTQGAFLAdAGAFDAGFFGISPREAVAMDPQQRLL 1614
                     69**************99**************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     le++w a+eda ++p +l+g rvgvf+G++ +d ++l     +  +  ++  a+ga +a+v++gr++y++g++Gp+vtvdtACsSslva+h+a 
     KIR65887.1 1615 LEVSWAAIEDARIDPLTLRGGRVGVFAGTNGQDFDNLIRNGGE--QLAGYG-ATGA-SASVLSGRVAYSFGFEGPAVTVDTACSSSLVALHLAA 1704
                     ********************************99775555544..488999.***9.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     qslrsge+d+alaGGv+++ tp+a++ fs+++ ls+dgrc++f+++adG+ +GEGvG+++++rl+da
     KIR65887.1 1705 QSLRSGECDLALAGGVTVMATPGAFVEFSRQRGLSADGRCRSFAESADGTGWGEGVGVLLVQRLSDA 1771
                     *****************************************************************98 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 6.4
                     HHHHHHHHHTS-HHTCTTGG.EEEEEEESSTHHHHHHHHHHHTT CS
  ketoacyl-synt   95 aawealedagltpeeldgsr.vgvfiGvgagdyaalaaldedgs 137 
                     aa++a+ da +  ++ +g++ ++v  G  ag  a++a++ e+++
     KIR65887.1 2811 AAANAFVDALVARRRARGTAaTAVAWGPWAG--AGMAVQGEAQE 2852
                     8999***********9999999999998888..55556665554 PP

  == domain 4  score: 288.8 bits;  conditional E-value: 4.1e-89
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     +p++ivGm++r+Pgg+d ++++w++L +grd+is++p dr w  + l   + r+ +++  ++ggf+  + +fd+effgisprea amdpqqrll
     KIR65887.1 3037 DPIVIVGMACRLPGGVDtADQLWDMLTAGRDGISDFPLDRgW-DSFL---DGRLSDTSFPRQGGFVYdAGAFDAEFFGISPREAVAMDPQQRLL 3126
                     69***************9*******************99944.4444...688888888899****99************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     le++wea+e+ag++p +l+g+rvgvf+G++ + ya +a+ + d+ ev ++   +g+ +++v++gr++y++g++Gp+vtvdtACsSslva+h+a 
     KIR65887.1 3127 LEVSWEAVESAGVDPSRLKGERVGVFAGASFQGYASTAMGR-DQ-EVGGHL-LTGN-ATSVLSGRVAYSFGFEGPAVTVDTACSSSLVALHLAA 3216
                     **********************************7755555.44.488888.99*9.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     qslrsge+d+alaGGv+++ +p +++ f+++g ls+dgrc++f+++adG+ +GEGvG+++++rl+da
     KIR65887.1 3217 QSLRSGECDLALAGGVTVMASPATFVEFAKQGGLSADGRCRSFAESADGTGWGEGVGVLLVERLSDA 3283
                     *****************************************************************98 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.59
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTT.GGGSCTTHHHH CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgs.evkaspkavga 148 
                     + ++al++agl+p+++d  +   +g ++G  ++ +a    l  +g+ + +a p  +g+
     KIR65887.1 3319 VIRQALASAGLSPADVDVVEahgTGTTLGDPIEAQAL---LATYGQgRGDAAPLLLGS 3373
                     6789*********999544444599999988886633...333333234554444444 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.7   0.3   5.9e-60   5.3e-57       3     317 ..     564     878 ..     562     880 .. 0.97
   2 !  195.4   0.2   1.8e-60   1.6e-57       3     317 ..    2049    2363 ..    2047    2365 .. 0.97
   3 !  200.5   0.1     5e-62   4.5e-59       3     317 ..    3564    3878 ..    3562    3880 .. 0.97

  Alignments for each domain:
  == domain 1  score: 193.7 bits;  conditional E-value: 5.9e-60
                    EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHH CS
  Acyl_transf_1   3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGE 94 
                    +f+GqG+Q  GMG+eL+   +++a++ +r    f+   +  + +v+ ++       lld++ f+q +L+a+++al+ell s+Gv+ + +vGHS+GE
     KIR65887.1 564 LFTGQGAQRSGMGRELYVRFPVYAEAFDRVCGLFAGRLDRPLREVVFAESGsdlaALLDQTAFTQAGLFALEVALYELLASFGVTADYLVGHSIGE 659
                    7**********************************************9999888899*************************************** PP

                    HHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS.HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECCCEEC CS
  Acyl_transf_1  95 lAaavvagalsseeallavvlrsrlmmqlagpgdmaavelaeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalvenvnvav 190
                    + aa+vag ls+e+a   v+ r+ lm+ l   g+m+av+ ae e ++   d v +a++n+pr vv+sg  + l+ + +r++++g +a++  v+ a+
     KIR65887.1 660 VTAAHVAGVLSLEDACALVAARGSLMQALPAGGGMLAVGAAEAEVRALAGDGVDVAAVNGPRAVVLSGLVADLDVIAQRCAEKGWRAKRLPVSHAF 755
                    ************************************************************************************************ PP

                    TTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHH.HHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCHHGGG- CS
  Acyl_transf_1 191 hspqvdaiadalasaladiaprkpkvakisstsldes.serelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlksaedv 285
                    hs+ ++++  + +s l  +  ++p+++  s ++ + + +++  s +ywv+ +r++vrf + ++ +   + + fve+ p ++l+a   +t  +    
     KIR65887.1 756 HSRLMEPMLAEFRSVLEGLDWQTPRLPIVSNVTGRIAeTAEITSPDYWVRHVREAVRFGDSITTLHGLGVKSFVEVGPDATLTAMAADTPAE---- 847
                    **********************************99846666789*******************************************9996.... PP

                    TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT- CS
  Acyl_transf_1 286 ksatlvGklkrdltdflvtflyllakahltgs 317
                     +a lv  l+rd++d   ++ ++la++h+tg 
     KIR65887.1 848 RPAHLVAALRRDQDD-TTALVTALARLHVTGT 878
                    9**************.999***********96 PP

  == domain 2  score: 195.4 bits;  conditional E-value: 1.8e-60
                     EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TT CS
  Acyl_transf_1    3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSl 92  
                     +f+GqG+Q  GMG+eL++  +++a++ +r    f+     s+ +v+ + p     glld+++ +q +L+a+++al ell s+Gv+ + +vGHS+
     KIR65887.1 2049 LFTGQGAQRSGMGRELYDRFPVYADAFDRVCALFAGRLERSLREVVFASPGsdlaGLLDQTVYTQAGLFALEVALHELLASFGVTADYLVGHSI 2142
                     7*************************************************99999*************************************** PP

                     HHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS.HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECC CS
  Acyl_transf_1   93 GElAaavvagalsseeallavvlrsrlmmqlagpgdmaavelaeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalvenv 186 
                     GE+ aa+vag ls+e+a   v+ r+ lm+ l   g+m+av+ ae e ++     v +a++n+p++vv+sg+ + l+++  ++  +g ++++  v
     KIR65887.1 2143 GEVTAAHVAGVLSLEDACALVAARGSLMQALPTGGGMLAVGAAEAEVRALAGGGVDVAAVNGPQSVVLSGPVADLDRIAGECVDRGWRVKRLPV 2236
                     ********************************************************************************************** PP

                     CEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCH.HHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCC CS
  Acyl_transf_1  187 nvavhspqvdaiadalasaladiaprkpkvakisstsldesserel.saeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektl 279 
                     + a+hs+ ++++  + +  l+ +  r p+++  s ++ + ++++e+ + eywv+ +r++vrf +av+ + + +   fve+ p ++l+a   +t 
     KIR65887.1 2237 SHAFHSRLMEPMLAEFRTVLQGLDWRAPRLPIVSNVTGRVAEAGEItDPEYWVRHVREAVRFGDAVATLHDLGVSSFVEVGPDATLTAMAADTP 2330
                     ***************************************9988775277*****************************************9999 PP

                     HHGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT- CS
  Acyl_transf_1  280 ksaedvksatlvGklkrdltdflvtflyllakahltgs 317 
                          + +  lv  l+rd+ + +     +la++h+tg 
     KIR65887.1 2331 V----GRPVHLVAALRRDQSE-ATGIVNALARLHVTGT 2363
                     9....7999************.**************96 PP

  == domain 3  score: 200.5 bits;  conditional E-value: 5e-62
                     EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TT CS
  Acyl_transf_1    3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSl 92  
                     +f+GqG+Q  GMG+eL++  +++a++ +r    f+  ++ s+ +v+ + p     glld++  +q +L+a+++al ell ++Gv+ + +vGHS+
     KIR65887.1 3564 LFTGQGAQRSGMGRELYDRFPVYADAFDRVCARFEGWFDRSLREVVFASPGsdlaGLLDQTAYTQAGLFALEVALHELLAAFGVTGDYLVGHSI 3657
                     7*************************************************99999*************************************** PP

                     HHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS.HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECC CS
  Acyl_transf_1   93 GElAaavvagalsseeallavvlrsrlmmqlagpgdmaavelaeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalvenv 186 
                     GE+ aa+vag ls+e+a   v+ r+rlm+ l   g+m+av+ ae e +    d v +a++n+pr vv++g+  +l+++  +++++g ++++  v
     KIR65887.1 3658 GEVTAAYVAGVLSLEDACALVAARGRLMQALPSGGGMLAVGVAEGEARGLAGDGVDVAAVNGPRAVVLAGEVVELDRIAGECAERGWRVKRLPV 3751
                     ******************************************99999999******************************************** PP

                     CEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCH.HHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCC CS
  Acyl_transf_1  187 nvavhspqvdaiadalasaladiaprkpkvakisstsldesserel.saeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektl 279 
                     + a+hs+ ++++  + +  la +  r p+++  s ++ + ++++e+ + eywv+ +r++vrfa+ +  ++e +  +fve+ p ++l+a   +t 
     KIR65887.1 3752 SHAFHSRLMEPMLAEFRTVLAGLEWRAPRLPVVSNLTGRVAEAGEItDPEYWVRHVREAVRFADSIVTLRELGVSTFVEVGPDATLTAMAADTP 3845
                     ***************************************9988775277*****************************************9999 PP

                     HHGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT- CS
  Acyl_transf_1  280 ksaedvksatlvGklkrdltdflvtflyllakahltgs 317 
                      +     +a lv  l+rd+ +    + ++la++h+tgs
     KIR65887.1 3846 AD----RPAHLVAALRRDQPE-TTSLVAALARLHVTGS 3878
                     95....99*************.99999*********98 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.7   1.4   1.1e-59     1e-56       1     180 []    1148    1326 ..    1148    1326 .. 0.99
   2 ?   -3.4   0.0       8.8   7.9e+03      43      86 ..    2493    2538 ..    2481    2540 .. 0.70
   3 !  187.9   2.3   1.7e-58   1.5e-55       1     179 [.    2664    2840 ..    2664    2841 .. 0.98
   4 !  184.8   4.1   1.5e-57   1.4e-54       1     179 [.    4179    4355 ..    4179    4356 .. 0.99

  Alignments for each domain:
  == domain 1  score: 191.7 bits;  conditional E-value: 1.1e-59
                  SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------T CS
          KR    1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkll 97  
                  gt l+tGG+G+LG ++ar la+ ga hl+l+sR+++  + ++al +el+alg++v+v+a+D +d+da++ ll++i a+  p++ v+h+A +l+d+ +
  KIR65887.1 1148 GTTLVTGGTGALGGHVARALAAAGADHLLLVSRRGPDAPGAAALAEELTALGTRVTVAACDAADRDALRDLLAAIPADL-PLTAVVHTAAALDDTVV 1243
                  899*************************************************************************888.***************** PP

                  TT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BTT CS
          KR   98 eemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwae 180 
                  + +ta++++++l++Kv++a+nL+el++d++l  fvlfSS+ag++g +gqanYa +Na+lDala+ rr++glpa++i+wglwa+
  KIR65887.1 1244 DALTADRMATALRAKVDAARNLDELTRDHELSAFVLFSSLAGTMGGPGQANYAPGNAWLDALARRRRAEGLPATAIAWGLWAD 1326
                  *********************************************************************************86 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.8
                  HHHHHHHHTT-EEEE----TT..-HHHHHHHHHHHHHHSS---EEE CS
          KR   43 aliaelealgaevevvaaDvs..dkdavealleeikaeeppikGvi 86  
                   l + l+a+gaev +v++D +  ++d+ ++ l+++  + ++i+Gv+
  KIR65887.1 2493 PLAEGLAAHGAEVLTVSLDPAgtNRDDAAERLRAALPSPGEIAGVL 2538
                  4677899999999999999642256666666666666677888886 PP

  == domain 3  score: 187.9 bits;  conditional E-value: 1.7e-58
                  SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------T CS
          KR    1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkll 97  
                  gt+l+tGG+G+LG  +arw +  ga+hlvl+sR+++    + +l ++l+a+ga+v+v+a+Dv+d++a+ all+ + + ++p++ v+haAg+ + ++l
  KIR65887.1 2664 GTVLVTGGTGALGSRVARWAVGVGAEHLVLTSRRGERAVGAVELAERLRASGARVTVAACDVADRSALGALLDGLADAGDPVRAVVHAAGAPQFTPL 2760
                  89********************************999999999****************************************************** PP

                  TT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   98 eemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  +++t ++l++vl++Kv+Ga +L+ ll+  +ld fv+fSSiag++gsa qa YaaaNaf+Dal++ rr++g++a++++wg+wa
  KIR65887.1 2761 ADVTPDELREVLRAKVDGAAHLDALLP--ELDAFVVFSSIAGVWGSARQAGYAAANAFVDALVARRRARGTAATAVAWGPWA 2840
                  **************************9..6***************************************************8 PP

  == domain 4  score: 184.8 bits;  conditional E-value: 1.5e-57
                  SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------T CS
          KR    1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkll 97  
                  gt+litGG+G+LG  +a+w +  ga h+vl+sR+++    + +l ++l+a+g++v+v+a+Dv+d++a+ all+ + a+++p++ v+haAg+++ ++l
  KIR65887.1 4179 GTVLITGGTGALGSRVAEWAVGAGAGHVVLVSRRGERAVGAVELAERLRASGVRVTVAACDVADRSALGALLDGLAADGDPVRAVVHAAGAAHSTPL 4275
                  89********************************999999999****************************************************** PP

                  TT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   98 eemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                   e+ta++l++vl++Kv+Ga +L+ ll+  +ld fv+fSSiag++gsagqa YaaaNa+lD+l++ rr++g+++++++wg+wa
  KIR65887.1 4276 GELTADELREVLRAKVDGAAHLDALLP--ELDAFVVFSSIAGVWGSAGQAGYAAANAYLDGLVARRRARGAAGTAVAWGPWA 4355
                  **************************9..6***************************************************8 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.1   0.8   6.8e-48   6.1e-45       1     117 [.     292     407 ..     292     408 .. 0.98
   2 !  151.6   0.5   9.6e-48   8.6e-45       1     117 [.    1779    1894 ..    1779    1895 .. 0.98
   3 !  152.6   1.1   4.6e-48   4.1e-45       1     117 [.    3291    3408 ..    3291    3409 .. 0.98

  Alignments for each domain:
  == domain 1  score: 152.1 bits;  conditional E-value: 6.8e-48
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      +av++gsavn+dga+n+ltapng +q+r+i++ala+a+++p dvd+veahgtgt+lgDpiE++al +++g+++ + pl +gSvKsn+GH++aAa
       KIR65887.1 292 LAVVRGSAVNQDGASNGLTAPNGPSQQRVIRQALASARLSPLDVDVVEAHGTGTTLGDPIEAQALLATYGQGR-ETPLLLGSVKSNLGHTQAAA 384
                      69*********************************************************************99.88****************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      Gva++ik+v+a++hgv+p+tl++
       KIR65887.1 385 GVAGVIKMVQAMRHGVVPATLHV 407
                      **********************8 PP

  == domain 2  score: 151.6 bits;  conditional E-value: 9.6e-48
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GG CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHlea 92  
                       +av++gsavn+dga+n+ltapng +q+r+i++ala+a+++p dvd+veahgtgt+lgDpiE++al +++g+++ + pl +gSvKsn+GH++a
       KIR65887.1 1779 LAVVRGSAVNQDGASNGLTAPNGPSQQRVIRQALASARLSPLDVDVVEAHGTGTTLGDPIEAQALLATYGQGR-ETPLLLGSVKSNLGHTQA 1869
                       69*********************************************************************99.88**************** PP

                       GHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   93 AaGvaelikvvlalkhgvipptlnl 117 
                       AaGva++ik+vlal+hgv+p+tl++
       KIR65887.1 1870 AAGVAGIIKMVLALRHGVVPATLHV 1894
                       ************************8 PP

  == domain 3  score: 152.6 bits;  conditional E-value: 4.6e-48
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       +av++gsavn+dga+n+ltapng +q+r+i++ala+ag++p+dvd+veahgtgt+lgDpiE++al +++g+++   +pl +gS+KsniGH++
       KIR65887.1 3291 LAVVRGSAVNQDGASNGLTAPNGPSQQRVIRQALASAGLSPADVDVVEAHGTGTTLGDPIEAQALLATYGQGRGdAAPLLLGSIKSNIGHTQ 3382
                       69*********************************************************************999999*************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaGva++ik+vlal+hgv+p+tl++
       KIR65887.1 3383 AAAGVAGVIKLVLALRHGVVPATLHV 3408
                       *************************8 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   2.9e-15   2.6e-12       1     110 [.     410     526 ..     410     528 .. 0.89
   2 !   48.9   0.0   8.3e-16   7.4e-13       1     111 [.    1897    2012 ..    1897    2013 .. 0.91
   3 !   55.6   0.0   6.8e-18   6.1e-15       1     111 [.    3411    3527 ..    3411    3528 .. 0.91

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 2.9e-15
  KAsynt_C_assoc   1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk.eeslprL.lvlsgrteeaveallekleehlldae 89 
                     P+ +++ +++g +++vtep +wp       ++v+sfG++G+n+Hvi+++++  +++  s  +  lp + +++s+r++ea+  ++ +l++  ++++
      KIR65887.1 410 PSTKVD-WSSGAVELVTEPREWPVVGrprrAAVSSFGISGTNAHVIVEQADPVEAEVGSAgSVGLPVVpWLVSARSAEALGGQAVRLADFVREHP 503
                     8999**.***************98766888*********************888888888444555443689*********************** PP

  KAsynt_C_assoc  90 llsllneilseeisr..lpyRGy 110
                      ls ++   s ++sr  l++R+ 
      KIR65887.1 504 GLSPVDVGWSLATSRaaLEHRAV 526
                     **********9999999999976 PP

  == domain 2  score: 48.9 bits;  conditional E-value: 8.3e-16
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeeskeeslprLlvlsgrteeaveallekleehlldae 89  
                      P+++++ +++g +++vtep +wp       ++v+sfG++G+n+Hvi++++   ++++    e     +++s+r++ea+  ++++l++  ++++
      KIR65887.1 1897 PSSKVD-WSSGAVELVTEPREWPVVGrprrAAVSSFGISGTNAHVIVEQAGPVDAEPPVLVELPVVPWLVSARSAEALGGQAARLADFVREHP 1988
                      899***.***************98766888*********************9999999984455556899*********************** PP

  KAsynt_C_assoc   90 llsllneilseeisr..lpyRGya 111 
                       ls ++   s ++sr  l++R+ +
      KIR65887.1 1989 GLSPVDVGWSLATSRsaLEHRAVV 2012
                      *********99999999***9876 PP

  == domain 3  score: 55.6 bits;  conditional E-value: 6.8e-18
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi.....vgvNsfGfGGsnvHviLksnkkekrkeeskeeslprLlvlsgrteeaveallekleehllda 88  
                      P+ +++ +++g +++vte  +wp        ++v+sfG++G+n+HviL++++  ++++ ++ +     +++s+rt+ea+ a++++l+ehl ++
      KIR65887.1 3411 PSTKVD-WTSGAVTLVTEGREWPAVVdrprrAAVSSFGISGTNAHVILEQAEPVEAEPPRPVDLPVVPWLVSARTPEALAAQATRLAEHLGSD 3502
                      8999**.****************99999999*********************999998888444455699*******************9999 PP

  KAsynt_C_assoc   89 ellsllneilseeisr..lpyRGya 111 
                      +  + ++ + s +++r  l++R+ +
      KIR65887.1 3503 AGPTAADVAWSLATARaaLEHRAVV 3527
                      9999999999998888889999876 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   8.2e-13   7.3e-10       3     165 ..    1150    1311 ..    1148    1330 .. 0.82
   2 !   50.6   0.3   1.7e-16   1.6e-13       2     161 ..    2665    2822 ..    2664    2835 .. 0.91
   3 !   51.3   0.8     1e-16   9.4e-14       2     161 ..    4180    4337 ..    4179    4349 .. 0.90

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 8.2e-13
                  EEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHH...HHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGG CS
   adh_short    3 vlvtGassGIGraiakelakeGakvvv.vdrseek...leevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfse 95  
                   lvtG+++ +G  +a++la++Ga++++ v+r+  +   ++++a+el ++g++++++++D +dr+++++l++++ ++l    v+ + A++        
  KIR65887.1 1150 TLVTGGTGALGGHVARALAAAGADHLLlVSRRGPDapgAAALAEELTALGTRVTVAACDAADRDALRDLLAAIPADLPLTAVVHTAAAL-----DDT 1241
                  69**********************9998888754422268899999999***************************9766666666666.....333 PP

                  CSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHH CS
   adh_short   96 lseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslak 165 
                  + ++ + + +++ l + + ++r + +   +++  + v  sS ag ++ +g+a Y+   a +++l+r  + 
  KIR65887.1 1242 VVDALTADRMATALRAKVDAARNLDELTRDHELSAFVLFSSLAGTMGGPGQANYAPGNAWLDALARRRRA 1311
                  4444477779999999999999966666689999********************9877777777776655 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 1.7e-16
                  EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHH...HHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGG CS
   adh_short    2 vvlvtGassGIGraiakelakeGakvvv.vdrseekle...evakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfs 94  
                  +vlvtG+++ +G  +a+  +  Ga+++v ++r+ e++    e+a+ l++ ga+++++++Dv+dr+++ al++  ++  +++ ++v+ AG  +++p +
  KIR65887.1 2665 TVLVTGGTGALGSRVARWAVGVGAEHLVlTSRRGERAVgavELAERLRASGARVTVAACDVADRSALGALLDGLADAGDPVRAVVHAAGAPQFTPLA 2761
                  79***********************9998999988875111556666666*********************************************** PP

                  GCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHH CS
   adh_short   95 elseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltr 161 
                  +++ +e ++v+   + g+ +l  a+lp+++     + v  sS+ag  ++a +a Y+A+ a+v++l+ 
  KIR65887.1 2762 DVTPDELREVLRAKVDGAAHL-DALLPELD-----AFVVFSSIAGVWGSARQAGYAAANAFVDALVA 2822
                  ******************998.56799999.....88999**********************99975 PP

  == domain 3  score: 51.3 bits;  conditional E-value: 1e-16
                  EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHH...HHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGG CS
   adh_short    2 vvlvtGassGIGraiakelakeGakvvv.vdrseekle...evakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfs 94  
                  +vl+tG+++ +G  +a+  + +Ga +vv v+r+ e++    e+a+ l++ g +++++++Dv+dr+++ al++  +++ +++ ++v+ AG ++s+p  
  KIR65887.1 4180 TVLITGGTGALGSRVAEWAVGAGAGHVVlVSRRGERAVgavELAERLRASGVRVTVAACDVADRSALGALLDGLAADGDPVRAVVHAAGAAHSTPLG 4276
                  69*********************9777769*9999976111556666666*********************************************** PP

                  GCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHH CS
   adh_short   95 elseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltr 161 
                  el+++e ++v+   + g+ +l  a+lp+++     + v  sS+ag  ++ag+a Y+A+ a ++gl+ 
  KIR65887.1 4277 ELTADELREVLRAKVDGAAHL-DALLPELD-----AFVVFSSIAGVWGSAGQAGYAAANAYLDGLVA 4337
                  ******************998.56799999.....88999******************999999875 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   1.3e-13   1.2e-10       2      67 .]    1432    1498 ..    1431    1498 .. 0.95
   2 !   43.5   0.0   3.5e-14   3.1e-11       2      67 .]    2948    3014 ..    2947    3014 .. 0.92
   3 !   45.8   0.0   6.3e-15   5.7e-12       2      67 .]    4463    4529 ..    4462    4529 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 1.3e-13
  PP-binding    2 klrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   +r+ va vlg  +++++ ++  ++dlG+ Sl+avel ++l ++ g+++p +  f+hp++ +laa++
  KIR65887.1 1432 LVRAEVAAVLGHgSADRVPAERAFRDLGFTSLTAVELRNRLDAATGLTLPATLAFDHPNPTALAAHI 1498
                  699*********88888889999*******************************************8 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 3.5e-14
  PP-binding    2 klrelvaevlgvplee.idpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   +r+ va vlg ++ + + +d+ +   G+DSl+avel ++l +e g+++p++ +f+hpt+ +l+a+l
  KIR65887.1 2948 LVRAQVAAVLGHATPDaVPADQAFQRQGFDSLTAVELRNRLTAETGLALPSTLVFDHPTPLALVAHL 3014
                  68999******97777255999999****************************************97 PP

  == domain 3  score: 45.8 bits;  conditional E-value: 6.3e-15
  PP-binding    2 klrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   +r  +a+vlg   + +i +   + +lG+DSl+avel ++l +e g+++p++ +f++pt+a+la++l
  KIR65887.1 4463 LVRGTAATVLGHrTPAAIRAARGFLELGFDSLTAVELRNRLTAETGLALPSTLVFDYPTPAALAEHL 4529
                  589999*****746666999*********************************************97 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   5.9e-10   5.3e-07      69     122 ..     192     243 ..     124     258 .. 0.90
   2 !   30.0   0.2   3.4e-10   3.1e-07      67     116 ..    1677    1724 ..    1660    1740 .. 0.86
   3 ?   -4.3   0.0        10   8.9e+03      24      54 ..    3123    3153 ..    3121    3161 .. 0.79
   4 !   33.0   0.2   4.2e-11   3.8e-08      51     119 ..    3173    3239 ..    3168    3256 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 5.9e-10
                 HTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS-EEE CS
  Thiolase_N  69 kagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsnaptae 122
                   g+  e pa tv+ +csS+l a++la+qs+++ge+  ++agGv  m++ +t +
  KIR65887.1 192 TFGF--EGPALTVDTACSSSLVALHLAVQSLRSGECTLALAGGVTVMTTLETFV 243
                 5555..779***************************************988765 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 3.4e-10
                  HHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEEST CS
  Thiolase_N   67 alkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsms 116 
                  a   g+  e pavtv+ +csS+l a++laaqs+++ge+d ++agGv  m 
  KIR65887.1 1677 AYSFGF--EGPAVTVDTACSSSLVALHLAAQSLRSGECDLALAGGVTVMA 1724
                  455555..789***********************************9986 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 10
                  HHHHHHHHHHHHHHHTS-GGGCCEEEEEHSS CS
  Thiolase_N   24 eeLlaealkallekagvdpeevdevivGnvl 54  
                  + Ll e+ ++++e+agvdp+ ++   vG  +
  KIR65887.1 3123 QRLLLEVSWEAVESAGVDPSRLKGERVGVFA 3153
                  56889999************99877777655 PP

  == domain 4  score: 33.0 bits;  conditional E-value: 4.2e-11
                  EHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS- CS
  Thiolase_N   51 GnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsnap 119 
                  G  l++++++ ++  +a   g+  e pavtv+ +csS+l a++laaqs+++ge+d ++agGv  m    
  KIR65887.1 3173 GHLLTGNATSVLSGRVAYSFGF--EGPAVTVDTACSSSLVALHLAAQSLRSGECDLALAGGVTVMASPA 3239
                  6777888888888899999999..99************************************9998655 PP

>> PKS_DE  Polyketide synthase dimerisation element domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   7.7   9.5e-15   8.5e-12       1      45 []    2412    2454 ..    2412    2454 .. 0.95
   2 ?    1.6   0.3      0.48   4.3e+02      14      37 ..    2766    2791 ..    2763    2792 .. 0.80
   3 !   48.7   6.3   9.1e-16   8.1e-13       1      45 []    3928    3970 ..    3928    3970 .. 0.96
   4 ?    1.6   0.3      0.47   4.2e+02      14      37 ..    4281    4306 ..    4279    4307 .. 0.80

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 9.5e-15
      PKS_DE    1 DaaFWaaVereDlaaLaatLgldadasLsavLPaLsaWRrrrreR 45  
                  D++FWaaVereDl++L a+L+++ +  L+++LP+L++WRr  + R
  KIR65887.1 2412 DERFWAAVEREDLTGLGAELAAE-QP-LRDLLPKLARWRRAGQRR 2454
                  99********************6.55.**************9998 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.48
      PKS_DE   14 aaLaatLgl..dadasLsavLPaLsa 37  
                  ++L + L++  d++a+L+a+LP L a
  KIR65887.1 2766 DELREVLRAkvDGAAHLDALLPELDA 2791
                  6778888877677779*******976 PP

  == domain 3  score: 48.7 bits;  conditional E-value: 9.1e-16
      PKS_DE    1 DaaFWaaVereDlaaLaatLgldadasLsavLPaLsaWRrrrreR 45  
                  D++FWaaVereDl++L a+L+++ ++ Ls++LP+L++WRr  ++R
  KIR65887.1 3928 DERFWAAVEREDLTGLGAELAAE-QS-LSDLLPKLARWRRAGQQR 3970
                  99********************6.55.****************99 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.47
      PKS_DE   14 aaLaatLgl..dadasLsavLPaLsa 37  
                  ++L + L++  d++a+L+a+LP L a
  KIR65887.1 4281 DELREVLRAkvDGAAHLDALLPELDA 4306
                  6788888887677779*******976 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.5   8.2e-09   7.3e-06       6     153 ..    1159    1307 ..    1154    1314 .. 0.79
   2 ?   -2.1   0.0       2.6   2.3e+03      11      40 ..    2495    2523 ..    2493    2533 .. 0.74
   3 !   27.9   0.8   1.7e-09   1.5e-06       6     152 ..    2675    2821 ..    2670    2839 .. 0.86
   4 !   30.8   1.9   2.3e-10   2.1e-07       6     152 ..    4190    4336 ..    4185    4347 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 8.2e-09
                    HHHHHHHHHHHTT-E.EEEEESSGGHHHHHHHHHHHTT...SEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2    6 IGraiAkalaeeGae.vvltdlneeakkrveelaeelg...aev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94  
                    +G ++A+ala++Ga+ ++l+ ++  ++  +++laeel    ++v   +cD++d++++++l +++ +++  l  +v+ a+  ++  + +  ++   
    KIR65887.1 1159 LGGHVARALAAAGADhLLLVSRRGPDAPGAAALAEELTalgTRVtvAACDAADRDALRDLLAAIPADL-PLTAVVHTAAALDD--TVVDALT--- 1247
                    6889**********86444444444455566666655422266455*********************9.79999999999999..3333344... PP

                    HHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHH CS
  adh_short_C2   95 fdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtr 153 
                     ++ +++ l++ +  a+ + +l +++  ++ v  ss++++++ p+++ y+   a l al+r
    KIR65887.1 1248 -ADRMATALRAKVDAARNLDELTRDHelSAFVLFSSLAGTMGGPGQANYAPGNAWLDALAR 1307
                    .445677778888899999999998889**********************99999999987 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.6
                    HHHHHHTT-EEEEEESSGGHHHHHHHHHHH CS
  adh_short_C2   11 AkalaeeGaevvltdlneeakkrveelaee 40  
                    A+ la++Gaev+ + l+ ++  + +++ae+
    KIR65887.1 2495 AEGLAAHGAEVLTVSLDPAG-TNRDDAAER 2523
                    999***********999998.333444443 PP

  == domain 3  score: 27.9 bits;  conditional E-value: 1.7e-09
                    HHHHHHHHHHHTT-E.EEEEESSGGHHHHHHHHHHHTTSE...E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2    6 IGraiAkalaeeGae.vvltdlneeakkrveelaeelgae...v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94  
                    +G  +A+ +   Gae +vlt ++ e++  + elae+l a+   v   +cDV+d++++ al + +++  + +  +v++ag  +   +p+++++ +e
    KIR65887.1 2675 LGSRVARWAVGVGAEhLVLTSRRGERAVGAVELAERLRASgarVtvAACDVADRSALGALLDGLADAGDPVRAVVHAAGAPQF--TPLADVTPDE 2767
                    6888999999999987888888888877777777777644433356*********************************9999..********** PP

                    HHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHH CS
  adh_short_C2   95 fdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealt 152 
                    ++++l  ++ ++++    +  l+ e  + v  ss+++  + + ++ y+aa a + al+
    KIR65887.1 2768 LREVLRAKVDGAAH----LDALLPELDAFVVFSSIAGVWGSARQAGYAAANAFVDALV 2821
                    *******9999865....4667888899************************999987 PP

  == domain 4  score: 30.8 bits;  conditional E-value: 2.3e-10
                    HHHHHHHHHHHTT-.EEEEEESSGGHHHHHHHHHHHTTSE.E....EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2    6 IGraiAkalaeeGa.evvltdlneeakkrveelaeelgae.v....lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94  
                    +G  +A+ +  +Ga +vvl+ ++ e++  + elae+l a+ v     +cDV+d++++ al + ++++ + +  +v++ag a++  +p+ e++ +e
    KIR65887.1 4190 LGSRVAEWAVGAGAgHVVLVSRRGERAVGAVELAERLRASgVrvtvAACDVADRSALGALLDGLAADGDPVRAVVHAAGAAHS--TPLGELTADE 4282
                    68888999999998447777777777777778888887555333669************************************..********** PP

                    HHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHH CS
  adh_short_C2   95 fdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealt 152 
                    ++++l  ++ ++++    +  l+ e  + v  ss+++  + ++++ y+aa a l +l+
    KIR65887.1 4283 LREVLRAKVDGAAH----LDALLPELDAFVVFSSIAGVWGSAGQAGYAAANAYLDGLV 4336
                    *******9999865....4667888899*************************99987 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   7.7e-10   6.9e-07       2     115 ..    1151    1282 ..    1150    1299 .. 0.76
   2 !   13.8   0.2   3.3e-05      0.03       1      73 [.    2666    2753 ..    2666    2851 .. 0.80
   3 !   15.2   0.4   1.3e-05     0.011       1      76 [.    4181    4271 ..    4181    4315 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 7.7e-10
                  EEETTTSHHHHHHHHHHHHCTSE.EEEEES-STT.TTCHHCHHC........EEEE--TT-HHHHHHHHHHH....T-SEEEE--S.---.H..HHH CS
   Epimerase    2 lVtGatGfiGsalvkallekgye.vigldrlssa.sntarledl........elveldltdrsalerlfkee....qpdavihlAa.vgg.v..aas 80  
                  lVtG+tG +G ++++al+++g + ++ ++r+  +    a+l++         ++  +d  dr+al++l++        +av+h Aa   + v  a +
  KIR65887.1 1151 LVTGGTGALGGHVARALAAAGADhLLLVSRRGPDaPGAAALAEEltalgtrvTVAACDAADRDALRDLLAAIpadlPLTAVVHTAAaLDDtVvdALT 1247
                  8********************886766666644303333333338******************99998875511115679****7755441311345 PP

                  HHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEE CS
   Epimerase   81 sedpadfieknlqgtlnlleaarkagvkrllflsS 115 
                  +++ a  +++ +  ++nl e  r++++  ++ +sS
  KIR65887.1 1248 ADRMATALRAKVDAARNLDELTRDHELSAFVLFSS 1282
                  667788899*************************9 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.3e-05
                  EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHH...HH..T-SEEEE--S CS
   Epimerase    1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrsalerlfk...ee..qpdavihlAa 73  
                  +lVtG+tG +Gs +++     g e ++l++++ +++ ++ e +          ++  +d+ drsal +l++   +    + av+h+A+
  KIR65887.1 2666 VLVTGGTGALGSRVARWAVGVGAEHLVLTSRRGERAVGAVELAerlrasgarvTVAACDVADRSALGALLDglaDAgdPVRAVVHAAG 2753
                  79********************997777777444444443333789******************887776511122236788888876 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 1.3e-05
                  EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-.STTTTCHHCHHC...........EEEE--TT-HHHHHHHHHHHT-S.....EEEE--S--- CS
   Epimerase    1 ilVtGatGfiGsalvkallekgye.vigldrl.ssasntarledl...........elveldltdrsalerlfkeeqpd.....avihlAavgg 76  
                  +l+tG+tG +Gs +++    +g   v+ ++r+ ++a    +   l           ++  +d+ drsal +l++  ++d     av+h+A+ ++
  KIR65887.1 4181 VLITGGTGALGSRVAEWAVGAGAGhVVLVSRRgERAVGAVE---LaerlrasgvrvTVAACDVADRSALGALLDGLAADgdpvrAVVHAAGAAH 4271
                  79********************4436666666033333333...13458******************888877755444333339999998766 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.6e-06    0.0051       2     128 ..    1151    1282 ..    1150    1283 .. 0.77
   2 !   16.5   0.0   4.1e-06    0.0037       1      98 [.    2666    2766 ..    2666    2797 .. 0.73
   3 !   17.3   0.0   2.3e-06    0.0021       1      96 [.    4181    4279 ..    4181    4312 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.6e-06
                       EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-S....EEEE------ CS
  Polysacc_synt_2    2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvd....vvfhaAAlKh 89  
                       lvtG++G++G ++ r +++  + +++l++r        +    eel++  l +++++  +d +d++ l+++l ++  d    +v+h+AA   
       KIR65887.1 1151 LVTGGTGALGGHVARALAAAGADHLLLVSRRGPDAPGAAAL-AEELTA--LGTRVTVAACDAADRDALRDLLAAIPADlpltAVVHTAAALD 1239
                       8*****************************98877665553.344444..445566789*********999987665422227999877654 PP

                       ...HHHH.HHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE CS
  Polysacc_synt_2   90 ...VPlv.eenpleaiktNvlgtenvieaaieagvkkvvliSt 128 
                          V ++    ++ a++  v +++n+ e + +++ +++vl S+
       KIR65887.1 1240 dtvVDALtADRMATALRAKVDAARNLDELTRDHELSAFVLFSS 1282
                       122544414567789999*********************9985 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 4.1e-06
                       EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-.HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T.....-SEEEE--. CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkkkpkkiillerd.Elklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelk.....vdvvfhaA. 85  
                       vlvtG++G++Gs++ r  +   +++++l +r  E ++ ++e   +  l+++  +v+  +  +dv+d++ l  +l+ l      v +v+haA 
       KIR65887.1 2666 VLVTGGTGALGSRVARWAVGVGAEHLVLTSRRgERAVGAVELAER--LRASGARVT--VAACDVADRSALGALLDGLAdagdpVRAVVHAAg 2753
                       89**************************99752777777766554..444444334..6699*******99998765323334889999994 PP

                       ----HHHHHHSHH CS
  Polysacc_synt_2   86 AlKhVPlveenpl 98  
                       A    Pl++  p 
       KIR65887.1 2754 APQFTPLADVTPD 2766
                       4455677776654 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 2.3e-06
                       EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-.HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T.....-SEEEE--. CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkkkpkkiillerd.Elklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelk.....vdvvfhaA. 85  
                       vl+tG++G++Gs++ +  +   + +++l++r  E ++ ++e    e+l+++ ++v+  +  +dv+d++ l  +l+ l      v +v+haA 
       KIR65887.1 4181 VLITGGTGALGSRVAEWAVGAGAGHVVLVSRRgERAVGAVELA--ERLRASGVRVT--VAACDVADRSALGALLDGLAadgdpVRAVVHAAg 4268
                       89*******************9999999987527777776655..45666667555..7799********99998765222236799**994 PP

                       ----HHHHHHS CS
  Polysacc_synt_2   86 AlKhVPlveen 96  
                       A    Pl e  
       KIR65887.1 4269 AAHSTPLGELT 4279
                       44557877754 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.1e-05      0.01       1      84 [.    1151    1236 ..    1151    1276 .. 0.82
   2 !   11.8   0.0   0.00013      0.12       1      72 [.    2667    2736 ..    2667    2752 .. 0.89
   3 !   14.8   0.0   1.6e-05     0.014       1      74 [.    4182    4253 ..    4182    4272 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH....T-SEEEE--S CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev....qpdevynLAA 84  
                     L+TG++G  G ++a+ L + g +   +v r    +    ++la++  + l +++++  +D  D+++l++lla +      ++v++ AA
     KIR65887.1 1151 LVTGGTGALGGHVARALAAAGADHLLLVSRRGPDA-PGAAALAEEL-TALGTRVTVAACDAADRDALRDLLAAIpadlPLTAVVHTAA 1236
                     9**********************999998877655.4455666544.56889*******************98833223456666666 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00013
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHH CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerlla 72  
                     L+TG++G  Gs +a++ +  g e  +++ r  + ++g +e  ++  ++    ++++  +D+ D+s+l  ll+
     KIR65887.1 2667 LVTGGTGALGSRVARWAVGVGAEHLVLTSRRGERAVGAVELAER-LRA-SGARVTVAACDVADRSALGALLD 2736
                     9********************************99999986554.443.467**************998876 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 1.6e-05
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev 74  
                     LiTG++G  Gs +ae+ +  g   +++v r  + ++g +e  ++ + +    ++++  +D+ D+s+l  ll+  
     KIR65887.1 4182 LITGGTGALGSRVAEWAVGAGAGHVVLVSRRGERAVGAVELAERLR-A-SGVRVTVAACDVADRSALGALLDGL 4253
                     9**********************99999999999999998665543.3.3569**************9998765 PP

>> Docking  Erythronolide synthase docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   2.6   1.1e-11   9.9e-09       1      24 [.       2      25 ..       2      27 .. 0.96

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.1e-11
     Docking  1 anEeKLRdYLKRvTaDLrqtRrRL 24
                anE KLR+YLKRvTaDL +t +RL
  KIR65887.1  2 ANEAKLREYLKRVTADLAETSERL 25
                8**********************9 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.5   1.9e-05     0.017       2      63 ..    1151    1220 ..    1150    1248 .. 0.80
   2 !   10.1   0.6   0.00048      0.43       1      64 [.    2666    2737 ..    2666    2763 .. 0.88
   3 !   10.0   1.2   0.00051      0.46       1      64 [.    4181    4252 ..    4181    4256 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.9e-05
                  EESSTTSHHHHHHHHHHHHHT-EEEEEES-S......-SHHHHHHHHST..TEEEES-TT-HHHHHHHHT CS
        NmrA    2 lviGaTGrqGksvvrallkaghkvralvRdt......kselakslkeaG..velvkgdlddkeslvealk 63  
                  lv+G+TG++G++v+ral++ag +   lv            la++l + G  v++ + d+ d++ l+ +l 
  KIR65887.1 1151 LVTGGTGALGGHVARALAAAGADHLLLVSRRgpdapgAAALAEELTALGtrVTVAACDAADRDALRDLLA 1220
                  79*****************998888888655569999999999999999433444999999999998876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00048
                  EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S......-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHTT CS
        NmrA    1 IlviGaTGrqGksvvrallkaghkvralvRdt......kselakslkeaGvelv..kgdlddkeslvealkg 64  
                  +lv+G+TG++G+ v+r ++ +g +  +l+           ela+ l ++G+ +   + d+ d++ l ++l+g
  KIR65887.1 2666 VLVTGGTGALGSRVARWAVGVGAEHLVLTSRRgeravgAVELAERLRASGARVTvaACDVADRSALGALLDG 2737
                  79******************9999888886666799999999********8653358899999999888876 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00051
                  EEESSTTSHHHHHHHHHHHH..HT-EEEEEES-S....-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHTT CS
        NmrA    1 IlviGaTGrqGksvvrallk..aghkvralvRdt....kselakslkeaGvelv..kgdlddkeslvealkg 64  
                  +l++G+TG++G+ v++ ++   agh v +  R +      ela+ l ++Gv +   + d+ d++ l ++l+g
  KIR65887.1 4181 VLITGGTGALGSRVAEWAVGagAGHVVLVSRRGEravgAVELAERLRASGVRVTvaACDVADRSALGALLDG 4252
                  79**************99995566666666666689988999********9754368899999999988876 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1    0.0012       1.1       3      44 ..     202     246 ..     200     266 .. 0.76
   2 !    9.2   0.3    0.0012         1       3      31 ..    1689    1717 ..    1687    1729 .. 0.87
   3 !    9.4   0.2    0.0011      0.95       3      32 ..    3201    3230 ..    3199    3243 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0012
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGG...CS-TT CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlsk...ilDwk 44 
                  + +aCs+ ++al++A + ++sg++  +L  g  +++    ++D++
   KIR65887.1 202 VDTACSSSLVALHLAVQSLRSGECTLALAGGVTVMTTletFVDFS 246
                  5689*******************9999976666555422256655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0012
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEE CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLv 31  
                   + +aCs+ ++al++A++ ++sg++  +L 
   KIR65887.1 1689 VDTACSSSLVALHLAAQSLRSGECDLALA 1717
                   5689******************9998886 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0011
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEEE CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLvi 32  
                   + +aCs+ ++al++A++ ++sg++  +L  
   KIR65887.1 3201 VDTACSSSLVALHLAAQSLRSGECDLALAG 3230
                   5689******************99988865 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0046       4.2      26      72 ..    1138    1185 ..    1119    1208 .. 0.70
   2 !    8.7   0.1    0.0012         1      26      87 ..    2654    2709 ..    2637    2725 .. 0.75
   3 !    6.4   0.2    0.0057       5.2      27      87 ..    4170    4224 ..    4152    4241 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0046
                    TCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHH CS
  2-Hacid_dh_C   26 ekallgkelsgktvGiiGlGrIGqavakrlkafgm.kviaydrskkke 72  
                     +  +  + +g t+   G+G++G +va+ l+a g+ +++ ++r+  + 
    KIR65887.1 1138 ATPARAWTPRGTTLVTGGTGALGGHVARALAAAGAdHLLLVSRRGPDA 1185
                    44556667899************************6666677665544 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0012
                    TCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHH CS
  2-Hacid_dh_C   26 ekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvslee 87  
                    e+a +  +lsg  +   G+G++G++va+ + ++g++ ++   ++ ++    ++    v+l e
    KIR65887.1 2654 ESARREFRLSGTVLVTGGTGALGSRVARWAVGVGAEHLVLTSRRGER----AV--GAVELAE 2709
                    467788899**************************888887765522....22..2345554 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0057
                    CCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHHHTCEECSHHH CS
  2-Hacid_dh_C   27 kallgkelsgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeeelgvelvslee 87  
                    +a +  +lsg  +   G+G++G++va+ + + g+ +v+ ++r+ ++           v+l e
    KIR65887.1 4170 AARREFRLSGTVLITGGTGALGSRVAEWAVGAGAgHVVLVSRRGERAV-------GAVELAE 4224
                    5667778999999999*****************999999999976443.......2244444 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.5   0.00015      0.13       3      93 ..    1150    1273 ..    1148    1283 .. 0.85
   2 ?    6.6   0.3     0.004       3.5       2     114 ..    2665    2811 ..    2664    2816 .. 0.79
   3 ?    4.6   0.6     0.017        15       2     107 ..    4180    4319 ..    4179    4331 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
                     EEEESTTSHHHHHHHHHCTTTSEEEEEE.-TT........................T--TTSHHHHHHHHHHH--S....EEEE----...--H CS
  RmlD_sub_bind    3 ilvtGanGqlGseLakqlaeeglevlal.tre........................eldltdaeavaellkeakpd....vvvnaAAy...tav 64  
                      lvtG++G+lG ++a++la++g++ l l +r+                        ++d +d++a+++ll+++  d    +vv++AA    t v
     KIR65887.1 1150 TLVTGGTGALGGHVARALAAAGADHLLLvSRRgpdapgaaalaeeltalgtrvtvaACDAADRDALRDLLAAIPADlpltAVVHTAAAlddTVV 1243
                     79********************99888835559*************************************87776655558***9996444779 PP

                     HHHHHS.HHHHHHHHTHHHHHHHHHHHHCT CS
  RmlD_sub_bind   65 DkaEse.eeaayavnaeavealAeaaaavg 93  
                     D+   +  + a ++ ++a+++l e+++ ++
     KIR65887.1 1244 DALTADrMATALRAKVDAARNLDELTRDHE 1273
                     987777467899999999999999988876 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.004
                     EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.........................T--TTSHHHHHHHH.....HHH--SEEEE---...-- CS
  RmlD_sub_bind    2 kilvtGanGqlGseLakqlaeeglevlaltre.........................eldltdaeavaell.....keakpdvvvnaAA...yt 62  
                     ++lvtG++G+lGs +a+ +   g+e l lt++                         ++d++d++a+ +ll     +    ++vv+aA    +t
     KIR65887.1 2665 TVLVTGGTGALGSRVARWAVGVGAEHLVLTSRrgeravgavelaerlrasgarvtvaACDVADRSALGALLdgladAGDPVRAVVHAAGapqFT 2758
                     58*********************9999997777999****************9999999****9999999944442222345999999522244 PP

                     -.HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S-TTS-B- CS
  RmlD_sub_bind   63 a.vDkaEseeeaayavnaeavealAeaaaavgalLihvStDyVFdGekkrpYe 114 
                        D   +e ++  ++ ++++++l ++  + +a++++ S   V   +++  Y+
     KIR65887.1 2759 PlADVTPDELREVLRAKVDGAAHLDALLPELDAFVVFSSIAGVWGSARQAGYA 2811
                     42466677777888888888888888888888888888877777777666665 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.017
                     EEEEESTTSHHHHHHHHHCTTTSEEEEEE.-TT........................T--TTSHHHHHHHHHHH--S.....EEEE--.----H CS
  RmlD_sub_bind    2 kilvtGanGqlGseLakqlaeeglevlal.tre........................eldltdaeavaellkeakpd.....vvvnaA.Aytav 64  
                     ++l+tG++G+lGs +a+ +  +g+  + l +r+                        ++d++d++a+ +ll+    d     +vv+aA A +  
     KIR65887.1 4180 TVLITGGTGALGSRVAEWAVGAGAGHVVLvSRRgeravgavelaerlrasgvrvtvaACDVADRSALGALLDGLAADgdpvrAVVHAAgAAHST 4273
                     589*************999988876666635558999999999999999999999999999999999999965554444445899986333444 PP

                     HHHH...HSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S CS
  RmlD_sub_bind   65 DkaE...seeeaayavnaeavealAeaaaavgalLihvStDyVFdG 107 
                        E   +e ++  ++ ++++++l ++  + +a++++ S   V   
     KIR65887.1 4274 PLGEltaDELREVLRAKVDGAAHLDALLPELDAFVVFSSIAGVWGS 4319
                     3444111233344555666677776666666666666666555555 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.8   4.3e+03      23      52 ..       4      33 ..       2      37 .. 0.85
   2 ?    1.2   0.8      0.28   2.5e+02     104     128 ..     649     673 ..     617     681 .. 0.75
   3 ?    1.1   0.0      0.31   2.7e+02     196     240 .]     712     756 ..     699     756 .. 0.91
   4 ?    1.5   0.7      0.24   2.1e+02     103     128 ..    2133    2158 ..    2108    2168 .. 0.72
   5 ?    3.2   0.0     0.071        63     196     240 .]    2197    2241 ..    2185    2241 .. 0.91
   6 ?    1.3   0.6      0.26   2.4e+02     104     128 ..    3649    3673 ..    3624    3684 .. 0.77
   7 ?   -1.8   0.0       2.4   2.2e+03     196     240 .]    3712    3756 ..    3708    3756 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.8
         SAT 23 nplLrsFLekasealraeisrlpaaerksl 52
                ++ Lr++L+++++ l +  +rl+aa+ k++
  KIR65887.1  4 EAKLREYLKRVTADLAETSERLKAADAKNH 33
                67799*****************99988765 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.28
         SAT 104 stylvGlCtGllaAaavacskslse 128
                   ylvG+++G + Aa va   sl++
  KIR65887.1 649 ADYLVGHSIGEVTAAHVAGVLSLED 673
                 669***************9988887 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.31
         SAT 196 vyisavssss.vtisGpPstleallksskakkkkkksklpiyapyH 240
                 v ++av++++ v++sG    l+ + ++++ k  + k +lp++ ++H
  KIR65887.1 712 VDVAAVNGPRaVVLSGLVADLDVIAQRCAEKGWRAK-RLPVSHAFH 756
                 7799***9999*****************99999999.9******99 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.24
         SAT  103 estylvGlCtGllaAaavacskslse 128 
                  +  ylvG+++G + Aa va   sl++
  KIR65887.1 2133 TADYLVGHSIGEVTAAHVAGVLSLED 2158
                  3679***************9998887 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.071
         SAT  196 vyisavssss.vtisGpPstleallksskakkkkkksklpiyapyH 240 
                  v ++av++++ v++sGp   l+++  ++     + k +lp++ ++H
  KIR65887.1 2197 VDVAAVNGPQsVVLSGPVADLDRIAGECVDRGWRVK-RLPVSHAFH 2241
                  67999999888*****************99999988.9*****999 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.26
         SAT  104 stylvGlCtGllaAaavacskslse 128 
                    ylvG+++G + Aa va   sl++
  KIR65887.1 3649 GDYLVGHSIGEVTAAYVAGVLSLED 3673
                  469***************9999887 PP

  == domain 7  score: -1.8 bits;  conditional E-value: 2.4
         SAT  196 vyisavssss.vtisGpPstleallksskakkkkkksklpiyapyH 240 
                  v ++av++++ v+++G    l+++  +++    + k +lp++ ++H
  KIR65887.1 3712 VDVAAVNGPRaVVLAGEVVELDRIAGECAERGWRVK-RLPVSHAFH 3756
                  6699***9999*****************99999988.9*****999 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1    0.0049       4.4       6      60 ..    1155    1211 ..    1151    1245 .. 0.76
   2 ?    0.1   0.2       1.4   1.2e+03       6      48 ..    2671    2716 ..    2667    2730 .. 0.66
   3 ?    3.4   0.3      0.13   1.2e+02       6      58 ..    4186    4240 ..    4180    4246 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0049
                     TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCC..CHHHHHHHHC...-EEECECHHHHHH CS
  F420_oxidored    6 GaGnmgealasgllaagaqpheivvansrnpe..kaeelaeelg...vkvtavdneeaae 60  
                     G+G +g  +a+ l+aag  + +++++++r p+   a++laeel     +vt  ++ +aa+
     KIR65887.1 1155 GTGALGGHVARALAAAG--ADHLLLVSRRGPDapGAAALAEELTalgTRVTV-AACDAAD 1211
                     9****************..666666779999844588888888755444444.5555555 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.4
                     TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC......- CS
  F420_oxidored    6 GaGnmgealasgllaagaqpheivvansrnpekaeelaeelg......v 48  
                     G+G +g+ +a+ ++  g  ++++v  +sr  e+a  + e ++      +
     KIR65887.1 2671 GTGALGSRVARWAVGVG--AEHLV-LTSRRGERAVGAVELAErlrasgA 2716
                     99*********999999..66666.458888887665555543223332 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.13
                     TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC......-EEECECHHHH CS
  F420_oxidored    6 GaGnmgealasgllaagaqpheivvansrnpekaeelaeelg......vkvtavdneea 58  
                     G+G +g+ +a+ ++ ag  + ++v++ sr  e+a  + e ++      v+vt  ++ ++
     KIR65887.1 4186 GTGALGSRVAEWAVGAG--AGHVVLV-SRRGERAVGAVELAErlrasgVRVTV-AACDV 4240
                     9****************..8888878.77777765554444433355555555.45554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.57u 0.33s 00:00:01.90 Elapsed: 00:00:00.52
# Mc/sec: 26870.55
//
Query:       KIR65888.1  [L=285]
Description: metallophosphoesterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-16   60.8   0.2    3.3e-16   60.4   0.2    1.2  1  Metallophos    Calcineurin-like phosphoesterase
    1.2e-05   25.5   0.0     0.0076   16.5   0.0    2.1  2  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
  ------ inclusion threshold ------
       0.16   11.6   0.0       0.25   10.9   0.0    1.2  1  Plant_tran     Plant transposon protein


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.2   5.6e-20   3.3e-16       3     204 .]       9     242 ..       7     242 .. 0.66

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 5.6e-20
                  EEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHHTSEEEEEC-TTS......................CHH CS
  Metallophos   3 ilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvkypipvylllGNHe......................gfe 78 
                  +l i+DlH       +++ +++++ l+++++ d++++aGD+ +     ++ l ll+  ++   +v++++GNHe                         
   KIR65888.1   9 LLAISDLH-----VVYAENKAIVEALRPDNDDDWLIVAGDVGEFAKDIEWALGLLRDRFA---RVIWAPGNHElwtprddtvqlrgeeryrhlvaL-- 96 
                  689*****.....***************************66666444546666899999...9*********87555554444333322222220.. PP

                  HHHHHHHHHHHHHHHHHEHH.....HCEEETSEEEEEETTE..........EEEEEEESECEEE........THHHHHHHHHHHSCHHHHCC...... CS
  Metallophos  79 eellnkygylgifsepwrsd.....aevfnnlplaslgsgs..........lkvlllhGgspel........lvsldklgslnleleapepg...... 147
                                     +     ++  + +p+++  +++          ++++  +G + ++        +                  g      
   KIR65888.1  97 -------------------CrslgvVTPEDPYPVWDPDGDPvliaplfvgyDYTWRPPGTYTREqalaraheT------------------Gvvctde 157
                  ...................222222222234444442222222111111123444444442222343432221..................0222223 PP

                  ...........HHHHHH........HHHHTTCSEEEEEESSESS.........CSSSCSCCHHHHHHHHHHTTESEEEEESSSSE CS
  Metallophos 148 ...........dewlkd........lekrekadwvivlgHsply.........rgsgylfgdealedllkkygvdlvisGHtHvy 204
                             d w +         l++++++ ++i+++H pl              ++ g + ++d+  +y+  + ++GH H +
   KIR65888.1 158 illhpdpypsrDAWCRArviqterrLDAERGGLPTILVNHYPLVreptrvlryPEFAQWCGTDLTADWHLRYDTRVAVYGHLHIP 242
                  33333333554666666999999999*********************************************************85 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.3e-06    0.0076       3      63 ..       9      79 ..       8     105 .. 0.67
   2 !    7.2   0.0   0.00091       5.4     117     140 ..     229     252 ..     172     268 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-06
  Metallophos_2  3 laiiSDlHsnldaleavlealke.vgvdaiihaGDleeeepe.vleellela.....pvlaVrGNnD.....e 63
                   l++iSDlH  +++ +a++eal+   + d +i+aGD+  +e+   +e++l l+     +v+  +GN++     +
     KIR65888.1  9 LLAISDLHVVYAENKAIVEALRPdNDDDWLIVAGDV--GEFAkDIEWALGLLrdrfaRVIWAPGNHElwtprD 79
                   799*****66666666666666533449*******9..3332266666665566669999999***9555431 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00091
  Metallophos_2 117 egsdvvvcGHtHvpevekeggvlv 140
                    ++ +v+v+GH H+p+ +  +gv++
     KIR65888.1 229 YDTRVAVYGHLHIPRTTWYDGVRF 252
                    4567**********9998888765 PP

>> Plant_tran  Plant transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.1e-05      0.25     124     171 ..      18      65 ..      11      80 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.1e-05
  Plant_tran 124 iypkwatlvksirlpqlekkklfaq.kqeaarkdverafGvlqarfkiv 171
                 +y +  ++v+++r p ++ + l +  +     kd+e a+G+l+ rf+ v
  KIR65888.1  18 VYAENKAIVEALR-PDNDDDWLIVAgDVGEFAKDIEWALGLLRDRFARV 65 
                 7999999999998.566666666550555679**************744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2112.10
//
Query:       KIR65889.1  [L=7862]
Description: acyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
          0 1189.0  31.3    5.2e-92  308.0   1.0    7.2  8  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
   7.9e-247  817.4   9.9    6.2e-83  278.9   0.0    4.6  4  Acyl_transf_1    Acyl transferase domain
   1.8e-225  741.5  38.7      3e-58  196.7   4.5    5.3  4  KR               KR domain
   7.9e-184  600.1  19.2    1.4e-45  154.1   0.8    5.2  5  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   4.9e-164  544.7  36.0    1.2e-55  188.8   6.4    4.0  3  PS-DH            Polyketide synthase dehydratase
    2.8e-62  208.1   0.0    1.3e-15   57.8   0.0    4.6  4  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    2.8e-60  203.2  13.7    2.3e-19   70.8   0.1    6.1  4  ADH_zinc_N_2     Zinc-binding dehydrogenase
      5e-49  164.5   0.0    1.4e-11   44.6   0.0    5.0  4  PP-binding       Phosphopantetheine attachment site
    5.1e-39  133.2  13.3    5.5e-12   45.8   0.2    6.1  4  ADH_zinc_N       Zinc-binding dehydrogenase
    1.5e-37  128.9  29.1    1.7e-10   40.6   0.1    5.3  5  adh_short        short chain dehydrogenase
    4.1e-33  114.9  10.1    1.4e-08   34.5   0.2    5.6  5  Thiolase_N       Thiolase, N-terminal domain
    2.4e-26   91.8   4.6    1.1e-07   31.7   0.0    4.5  3  ADH_N            Alcohol dehydrogenase GroES-like domain
    6.4e-13   49.0   7.3    6.4e-13   49.0   7.3    7.3  3  PKS_DE           Polyketide synthase dimerisation element dom
    3.7e-10   39.2   5.6    1.3e-09   37.5   5.6    2.1  1  Docking          Erythronolide synthase docking
    2.6e-08   33.6  18.2    0.00015   21.3   0.3    4.6  4  Epimerase        NAD dependent epimerase/dehydratase family
    9.7e-05   21.6   2.0      0.005   16.0   0.0    3.4  4  Polysacc_synt_2  Polysaccharide biosynthesis protein
    0.00013   21.5   0.1     0.0093   15.4   0.0    3.2  4  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
     0.0082   15.8   0.0        6.6    6.4   0.0    4.9  5  Thiolase_C       Thiolase, C-terminal domain
  ------ inclusion threshold ------
      0.017   14.7  26.3      0.053   13.1   0.2    4.7  4  NmrA             NmrA-like family
      0.082   12.2  12.6        6.3    6.0   0.4    4.1  3  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
       0.23   11.3   7.7        8.2    6.2   0.2    3.4  3  FA_desaturase    Fatty acid desaturase
       0.37   10.9  31.2       0.83    9.8   4.2    5.9  3  DUF4232          Protein of unknown function (DUF4232)
       0.45    9.6  13.2       0.13   11.3   0.3    4.0  4  RmlD_sub_bind    RmlD substrate binding domain
        3.2    7.7  11.1         32    4.5   0.2    3.7  3  Rhomboid         Rhomboid family
        3.5    7.6  34.2       0.88    9.5   0.4    6.6  6  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.3   0.3     2e-93   1.4e-90       2     253 .]      34     284 ..      33     284 .. 0.97
   2 ?   -1.9   0.0       2.8     2e+03      95     128 ..     320     356 ..     318     396 .. 0.64
   3 !  306.5   2.2   2.1e-94   1.5e-91       2     253 .]    2106    2356 ..    2105    2356 .. 0.97
   4 ?   -0.7   0.0       1.2   8.5e+02      95     148 ..    2392    2446 ..    2390    2483 .. 0.60
   5 !  287.1   0.4   1.7e-88   1.3e-85       2     253 .]    4196    4444 ..    4195    4444 .. 0.94
   6 ?   -2.2   0.0       3.5   2.5e+03      95     146 ..    4480    4532 ..    4479    4554 .. 0.64
   7 !  308.0   1.0   7.2e-95   5.2e-92       2     253 .]    6265    6513 ..    6264    6513 .. 0.96
   8 ?   -0.1   0.1       0.8   5.8e+02      95     148 ..    6549    6601 ..    6547    6630 .. 0.62

  Alignments for each domain:
  == domain 1  score: 303.3 bits;  conditional E-value: 2e-93
                    --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllle 94 
                    ep+a+v+m++rfPgg++ +e++w+l+ +g da++++p+dr wd  +lydp+++ +g++++++ggfld + +fdp++fgisprea amdpqqrllle
     KIR65889.1  34 EPIAVVAMACRFPGGVGsPEDLWDLVAAGTDATGPFPTDRgWDLARLYDPDPDHPGTSYSDRGGFLDdAGHFDPTLFGISPREALAMDPQQRLLLE 129
                    79********************************************************************************************** PP

                    HHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt  95 aawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslr 190
                    ++we +e+ag+++ +l+gsr+gvf+G++ +dya      ++g   ++++  +g+ +a+vi+gr++y++gl+Gp+vt+dtACsSslva+h+a q+lr
     KIR65889.1 130 TTWEVFERAGIDAGSLRGSRTGVFVGTAGQDYASVLRRLPEG--AEGYV-LTGT-AASVISGRLAYSFGLEGPAVTIDTACSSSLVALHLAGQALR 221
                    ********************************7655555555..799**.9999.***************************************** PP

                    TTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    +ge+ +a+aGGv+++ tp++++ fs+++ l++dgrckaf+++adG+ ++EGvG+v+++rl+da
     KIR65889.1 222 DGECTLAVAGGVSVMATPGGFVEFSRQRGLAADGRCKAFSADADGTGWAEGVGMVLVERLSDA 284
                    *************************************************************98 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.8
                    HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHH CS
  ketoacyl-synt  95 aawealedagltpeeldgsr...vgvfiGvgagdyaa 128
                    + ++al +agltp+++d  +   +g  +G  ++ +a 
     KIR65889.1 320 VIRQALDNAGLTPADVDVVEahgTGTRLGDPIEAQAL 356
                    6789*********999544433477777766664433 PP

  == domain 3  score: 306.5 bits;  conditional E-value: 2.1e-94
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     ep+aivGm++rfPgg++ +e++w+l+ +g+dai+ +p dr wd d+lydp+a+ ag+++t++ggfl  +++fdp ffgisprea amdpqqrll
     KIR65889.1 2106 EPIAIVGMSCRFPGGVSsPEQLWDLVASGGDAIGGFPGDRgWDLDALYDPDADRAGTSTTRQGGFLYdAAEFDPGFFGISPREALAMDPQQRLL 2199
                     89******************************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     le++wea+e+ag++p++ +g+ +gvfiG++++ yaa+ +   +g   +++   +g+ + +v++gr++y++g++Gp+vtvdtACsSslva+h+a 
     KIR65889.1 2200 LETSWEAFEHAGIDPATGHGTVTGVFIGAASSGYAATGSDGLEG--LEGHL-LTGT-AGSVASGRVAYTFGFEGPAVTVDTACSSSLVALHLAA 2289
                     *****************9**99************8866666555..67777.8998.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     q+lrsge+d+alaGGv l+ +p+ +  fs++g l+pdgrckaf+++adG+ +GEGvG+++++rl+da
     KIR65889.1 2290 QALRSGECDMALAGGVALMAQPGMFSEFSRQGGLAPDGRCKAFAAAADGTGWGEGVGILLVERLSDA 2356
                     *****************************************************************98 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.2
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHH CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgsevkaspkavga 148 
                     + ++al++a ltp+++d  +   +g ++G  ++ +a la++ +d     ++p  +g+
     KIR65889.1 2392 VIRQALANARLTPADVDAVEahgTGTTLGDPIEAQALLATYGQDR--PADRPLLLGS 2446
                     6789************77776779999999998664333333222..2223333333 PP

  == domain 5  score: 287.1 bits;  conditional E-value: 1.7e-88
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     ep+aivGm++rfPg +  +e++w+l+ +g d i+++p+dr wd ++l+       ++++ ++ggfl  ++dfd++ffgisprea amdpqqrll
     KIR65889.1 4196 EPIAIVGMACRFPGDVRtPEQLWDLVTAGADVIAPFPTDRgWDLTDLR--GDAGDDTATPQRGGFLYdAADFDAAFFGISPREALAMDPQQRLL 4287
                     89************9988*****************************6..4444444455789***99************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     le++wea+e+ag++p + +gs++gv++G+ ++dya+ a+ ++d+   ++++  +g+ + +v++grisy +gl+Gp+vtvdtACsSslva+h+a 
     KIR65889.1 4288 LETSWEAFERAGIDPLTARGSSTGVYVGLIYHDYAGKALGTSDE--LDGYV-GNGS-AGSVASGRISYLFGLEGPAVTVDTACSSSLVALHLAA 4377
                     **********************************7755555444..99***.9998.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     q+lr++e+ +alaGGv+++ tp+ +a fs+++ lspdgrc+af ++a+G+ ++EGvG+++L+rl+da
     KIR65889.1 4378 QALRQNECGLALAGGVSVMSTPGMLAEFSRQRGLSPDGRCRAFGAGANGTGFAEGVGMLLLERLSDA 4444
                     *****************************************************************98 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 3.5
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTT.GGGSCTTHH CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgs.evkaspkav 146 
                     + ++al++a ltp+++d  +   +g  +G  ++ +a    l  +g+ +  ++p  +
     KIR65889.1 4480 VIRQALANARLTPADVDAVEahgTGTALGDPIEAQAL---LATYGQdRPADRPLLL 4532
                     5789***********9777766688888887775543...3333332233444444 PP

  == domain 7  score: 308.0 bits;  conditional E-value: 7.2e-95
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     +p+ai+Gm++rfPgg++ +e++w+l+ +g+dai+ +p dr wd d+lydp+a+ ag+++t++ggfl  +++fdp ffgisprea amdpqqrll
     KIR65889.1 6265 DPIAIIGMSCRFPGGVSsPEQLWDLVASGGDAIGGFPGDRgWDLDALYDPDADRAGTSTTRQGGFLYeAAEFDPGFFGISPREALAMDPQQRLL 6358
                     69******************************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     le++wea+e+ag++p++  +  +gvf+G+ ++dya+  a +  + e +++  ++g+ + +v++gr++y +gl+Gp+vtvdtACsSslva+h+a 
     KIR65889.1 6359 LETSWEAFEHAGIDPRD-TKATTGVFAGLIHHDYAGRLAAS--E-ELEGYL-VNGT-AGSVASGRVAYVFGLEGPAVTVDTACSSSLVALHLAA 6446
                     ***************77.4457************7744444..3.368899.8887.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     q+lrsge+d+alaGGv+++ tp+a++gfs+++ ls+dgrck+f+++adG+ ++EGvG+++++rl+da
     KIR65889.1 6447 QALRSGECDLALAGGVTVMATPSAFVGFSRQRGLSADGRCKSFAASADGTGWSEGVGMLLVERLSDA 6513
                     *****************************************************************98 PP

  == domain 8  score: -0.1 bits;  conditional E-value: 0.8
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTT....GGGSCTTHHHH CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgs....evkaspkavga 148 
                     + ++al++a ltp+++d  +   +g ++G  ++ +a la++ +d +             g+
     KIR65889.1 6549 VIRQALANARLTPADVDAVEahgTGTTLGDPIEAQALLATYGQDREtpllL--------GS 6601
                     6789************77776679999999999665444444333344331........22 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.1   0.8   2.1e-55   1.5e-52       3     318 ..     569     888 ..     568     889 .. 0.93
   2 !  278.9   0.0   8.7e-86   6.2e-83       1     317 [.    2640    2960 ..    2640    2962 .. 0.96
   3 !  178.4   0.0   3.4e-55   2.5e-52       3     317 ..    4730    5052 ..    4729    5054 .. 0.96
   4 !  183.6   0.6     9e-57   6.5e-54       3     317 ..    6794    7111 ..    6793    7113 .. 0.95

  Alignments for each domain:
  == domain 1  score: 179.1 bits;  conditional E-value: 2.1e-55
                    EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHH CS
  Acyl_transf_1   3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGE 94 
                    +fsGqG+Q aGMG+eL+++ ++fa v+++   ++       +  vl ++       ll +++f+q +L+av++al+ l +s+Gv p+ v GHS+GE
     KIR65889.1 569 LFSGQGAQRAGMGRELYASFPVFASVLDEVCGHLDRGLPQPLRPVLFAEAGtpeaELLGQTVFTQAGLFAVEVALFRLVESFGVVPDFVGGHSVGE 664
                    6***********************************88889****9887666667899************************************** PP

                    HHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH...TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECCC CS
  Acyl_transf_1  95 lAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklr.cqddvvgavansprrvvisgsqealrelvervskegvgalvenvn 187
                    + aa+vag ls+e a   vv r+rlm+ l   g+m+av+   + +   l    d+v  a++n+p +vv+sg  +al+ l + ++ +gv+ ++ +v+
     KIR65889.1 665 IVAAHVAGVLSLEHACALVVARGRLMQALPAGGGMLAVNAaeSDVLASLDgLSDRVGIAAVNGPASVVVSGAVDALDVLEQAWRGRGVRTRRLAVS 760
                    ***************************************94434444555789******************************************* PP

                    EECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCH.HHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCHHG CS
  Acyl_transf_1 188 vavhspqvdaiadalasaladiaprkpkvakisstsldesserel.saeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlksa 282
                     a+hsp ++++ ++ ++ +  ++   p ++  s ++   +++ e+ s +ywv+ +r++vrfa+ v++++  + ++f+e+ p s+l+a   ++l   
     KIR65889.1 761 HAFHSPLMEPMLEKFRALVSRLTFSAPVLPLVSNVTGALADPDEVrSVDYWVRHVREAVRFADGVAALRSAGVDTFLEVGPQSVLTALTAEALP-- 854
                    ************************************9999776652789*********************************************.. PP

                    GG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT-H CS
  Acyl_transf_1 283 edvksatlvGklkrdltdflvtflyllakahltgse 318
                    +++ + +++   +rd  + +  +l++la++h+ g+ 
     KIR65889.1 855 DGGDVVAVAA-QRRDRPE-VAGLLAALAELHVHGVS 888
                    5666666665.999***9.*************9986 PP

  == domain 2  score: 278.9 bits;  conditional E-value: 8.7e-86
                     EEEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T.TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTH CS
  Acyl_transf_1    1 vfvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe.glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlG 93  
                     vfvf+GqGsQwaGM+++Ll++s++f++ +++++  +    ++   dvlr +p  + +d++++vqp L+ v+++lae++ks Gvrp+av+GHS+G
     KIR65889.1 2640 VFVFPGQGSQWAGMALDLLESSPVFRDRMDQCAAELSRLVDWNPEDVLRGAPDaPPMDRVDVVQPLLFSVMVSLAEVWKSCGVRPDAVIGHSQG 2733
                     8************************************************8876489************************************** PP

                     HHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH...TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEE CS
  Acyl_transf_1   94 ElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklr.cqddvvgavansprrvvisgsqealrelvervskegvgalve 184 
                     E+Aaa + gal++ +a++ vv rsr    ++g g+m +v l  a +e+ ++ +   +++a++n+   +v+sg  ++++el + +++++++a+++
     KIR65889.1 2734 EIAAACAVGALTLPDAMRLVVARSRGLLAISGLGGMVSVPLsaADTEQLIApWAGALSVAAVNGAAVTVVSGDAGPVDELLATCAERDIRARRI 2827
                     *****************************************96566666669****************************************** PP

                     CCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCC CS
  Acyl_transf_1  185 nvnvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalekt 278 
                     +v++a+h   v+a++++la+al +i  ++ +va++s+++ ++ ++ el+a+yw++nlr+pvr a+ v ++++ ++++fve+spH++l  +++++
     KIR65889.1 2828 AVDYASHCGHVEAVREDLAAALGTIEAHPTEVAFHSTVTGEPIDTVELDADYWYRNLREPVRLAPVVDALIAAGYRTFVEVSPHPVLKVVVQDA 2921
                     ********************************************************************************************** PP

                     CHHGGG-TC.CCCCCTEETTSS-HHHCHHHHHHHHHHCT- CS
  Acyl_transf_1  279 lksaedvks.atlvGklkrdltdflvtflyllakahltgs 317 
                     l+ a+d+++   +vG+l+rd ++  +++l++l+ +h++g+
     KIR65889.1 2922 LDRAADGQPgGVVVGSLRRDEHG-PRQLLAALGGLHTAGV 2960
                     ***88877626889*********.*************997 PP

  == domain 3  score: 178.4 bits;  conditional E-value: 3.4e-55
                     EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TT CS
  Acyl_transf_1    3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSl 92  
                     +fsGqG+Q  GMG+e +   ++faa++++a  ++ +     + dvl +++      lld+++f+q +L+av++al+ l +s+G  p++v GHS+
     KIR65889.1 4730 LFSGQGAQRPGMGREAYGAFPVFAAALDEACGHLDPLLPRPLRDVLFATEGspdaDLLDQTVFTQAGLFAVEVALYRLVESFGIVPDLVGGHSV 4823
                     6**********************************************999988889************************************** PP

                     HHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH...TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEE CS
  Acyl_transf_1   93 GElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklr.cqddvvgavansprrvvisgsqealrelvervskegvgalv 183 
                     GE+ aa+vag ls+++a   v+ r+rlm+ l   g+m+av+   a ++  +   +d++  a++n+p  vv+sg  +al+++ + ++ +gv+ ++
     KIR65889.1 4824 GEITAAHVAGVLSLADACALVAARGRLMQALPAGGGMLAVAAgeADVRASIEgLTDRLGIAAVNGPAAVVVSGAADALDAVEAGWRDRGVRTRR 4917
                     *****************************************9888889999999**************************************** PP

                     ECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHH.HHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCC CS
  Acyl_transf_1  184 envnvavhspqvdaiadalasaladiaprkpkvakisstsldes.serelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaale 276 
                      +v+ a+hsp ++++  + ++ l  ++ ++p+++  s ++  ++  e  ++  ywv+ +r++vrfa+ ++ +++    + +e+ p  +l+  + 
     KIR65889.1 4918 LRVSHAFHSPLMEPMLAEFRAVLDGLTFQPPTLPVVSNLTGVAAdPEDLCDPGYWVRHVREAVRFADGIAYLRQRHVGTYLEVGPDGVLAGMIS 5011
                     ***********************99************9999888345568999***************************************** PP

                     CCCHH.GGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT- CS
  Acyl_transf_1  277 ktlks.aedvksatlvGklkrdltdflvtflyllakahltgs 317 
                     + l + ae+++   +v++l+r+ t+ ++++l++la+a   g+
     KIR65889.1 5012 DCLADtAEPAAGPVVVPTLRRGRTE-ASALLAALAEAYAGGV 5052
                     ***9878999999************.9999999988877765 PP

  == domain 4  score: 183.6 bits;  conditional E-value: 9e-57
                     EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TT CS
  Acyl_transf_1    3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSl 92  
                     +fsGqG+Q aGMG+eL +  ++faa++++    + +     +  vl + +     glld+++f+q +L+av++al+ l +s+Gv p+ v GHS+
     KIR65889.1 6794 LFSGQGAQRAGMGRELAEAFPVFAAALDEVCAGLDPLLPQPLRPVLFASEGspeaGLLDQTVFTQAGLFAVEVALFRLVESFGVVPDFVGGHSV 6887
                     6*********************************************999988888*************************************** PP

                     HHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEE CS
  Acyl_transf_1   93 GElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalve 184 
                     GE+ aa+vag ls+++a   v+ r+rlm+ l   g+m+av+   +++ e ++   dv  a++n+p+ vv+sg  eal+e+ + ++ +gv++++ 
     KIR65889.1 6888 GEITAAYVAGVLSLADACALVAARGRLMQALPAGGGMLAVAApeEAVAESIAGRADVGIAAVNGPSAVVVSGAVEALDEVEQTWRDRGVRVRRL 6981
                     ******************************************8777888888****************************************** PP

                     CCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCH.HHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCC CS
  Acyl_transf_1  185 nvnvavhspqvdaiadalasaladiaprkpkvakisstsldesserel.saeywvanlrspvrfaeavlsaaetiplvfveispHslllaalek 277 
                     +v+ a+hsp ++++  + ++ la++    p ++  s ++   +++ e+  a+ywv+ +r++vrfa+ v+ +++ +  +f+e+ p s+l+a   +
     KIR65889.1 6982 TVSHAFHSPLMEPMLAEFRAVLATLSFAAPLLPVVSNLTGALADADEIrTADYWVRHVREAVRFADGVTVLRKAGVGTFLEVGPQSVLTALAAD 7075
                     ************************9999***********9999887763699*****************************************9 PP

                     CCHHGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT- CS
  Acyl_transf_1  278 tlksaedvksatlvGklkrdltdflvtflyllakahltgs 317 
                      l    d  + t++   +rd  + + ++l++l+++h+ g+
     KIR65889.1 7076 VLP--GDEGVLTVAA-QRRDRPE-ATALLAALGELHVNGV 7111
                     999..5666677776.7899999.9999999999999887 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.7   4.5   4.1e-61     3e-58       1     179 [.    1731    1910 ..    1731    1911 .. 0.96
   2 !  183.2   4.2   5.7e-57   4.1e-54       1     179 [.    3823    4002 ..    3823    4003 .. 0.96
   3 !  184.8   5.9   1.8e-57   1.3e-54       1     179 [.    5893    6072 ..    5893    6073 .. 0.96
   4 !  193.2   1.2   4.8e-60   3.5e-57       1     180 []    7431    7610 ..    7431    7610 .. 0.99

  Alignments for each domain:
  == domain 1  score: 196.7 bits;  conditional E-value: 4.1e-61
                  SEEEEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS...--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE-------- CS
          KR    1 gtylitGGlGgLGlelarwlaekg.arhlvllsRsa.aadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdk 95  
                  gt l+tG+ G L+ ++ar+l++ g ar+lvl sR+   + +d +al+ael++ ga+v++v++Dv+d+++v+al++ i+  ++p++ v+h+Agvl+d+
  KIR65889.1 1731 GTTLVTGASGTLAGVVARHLVATGqARRLVLASRRLpVEGSDYAALVAELAEAGAQVSAVSVDVADPAQVAALVAGID-PAHPLTAVVHCAGVLADS 1826
                  899********************************6245667789********************************9.556*************** PP

                  -TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   96 lleemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                   ++++ta+d+++vl+pKv+Gaw Lhe+++  +l  fv+fSSia++lgs+gq+nYaaaNaflDala++rr+qglpa+si wg+wa
  KIR65889.1 1827 VVTSLTADDVATVLRPKVDGAWALHEATAGLDLSAFVVFSSIAATLGSPGQGNYAAANAFLDALAQHRRAQGLPATSIGWGMWA 1910
                  ***********************************************************************************7 PP

  == domain 2  score: 183.2 bits;  conditional E-value: 5.7e-57
                  SEEEEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS...--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE-------- CS
          KR    1 gtylitGGlGgLGlelarwlaekg.arhlvllsRsa.aadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdk 95  
                  gt l+tG+ G L+ ++ar+l++ g  r+lvl sR+   + +d +al+ael+  ga+v++v++Dv+d+ +v+ l++ i+   +p++ v+h+Agv++d+
  KIR65889.1 3823 GTTLVTGASGTLAGVVARHLVATGqSRRLVLASRRLpVEGSDYAALVAELTGAGAQVTAVSVDVADPVQVAGLVAGID-PVHPLTAVVHTAGVIADA 3918
                  899*********************99*********6245567789********************************8.557*************** PP

                  -TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   96 lleemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  ++ +++ + +++v++pKv+Gaw Lhe+++  +l  fv+fSSia++lgs+gq+nYaaaNaflDala++rr+qglpa+s++wglwa
  KIR65889.1 3919 TIGSLSVDGVAAVMRPKVDGAWALHEATAGLDLSAFVVFSSIAATLGSPGQGNYAAANAFLDALAQHRRAQGLPATSLAWGLWA 4002
                  ***********************************************************************************7 PP

  == domain 3  score: 184.8 bits;  conditional E-value: 1.8e-57
                  SEEEEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS...--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE-------- CS
          KR    1 gtylitGGlGgLGlelarwlaekg.arhlvllsRsa.aadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdk 95  
                  gt l+tG+ G L+ ++ar+l++ g ar+lvl sR+   + +d +al+ael+  ga+v++v++Dv+d+ +v+al++ ++  ++p++ v+h+Agv++d+
  KIR65889.1 5893 GTTLVTGASGTLAGVVARHLVATGqARRLVLASRRLpVEGSDYAALVAELTGAGAQVTAVSVDVADAGQVAALVAGVD-PAHPLTAVVHTAGVIADA 5988
                  899********************************6245567789********************************8.556*************** PP

                  -TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   96 lleemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  ++ +++ + +++vl+pKv+Gaw Lhe+++  +l  fv+fSSia++lgs+gq+nYaaaNaflDala++rr+qglpa+si wg+wa
  KIR65889.1 5989 TIGSLSVDGVAAVLRPKVDGAWALHEATAGLDLSAFVVFSSIAATLGSPGQGNYAAANAFLDALAQHRRAQGLPATSIGWGMWA 6072
                  ***********************************************************************************7 PP

  == domain 4  score: 193.2 bits;  conditional E-value: 4.8e-60
                  SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------T CS
          KR    1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkll 97  
                  gt+l+tGG+G+LG ++arw a +ga+hlvl+sR+++  + +++l +el+alg++v+v+a+Dv+d+dav+all++++a+ +p++ v+haAg+ + ++l
  KIR65889.1 7431 GTVLVTGGTGALGAHVARWAAGSGAEHLVLTSRRGEDAPGAAELRDELTALGVRVTVAACDVADRDAVAALLARVDADPAPLTAVVHAAGLNDVAPL 7527
                  89*********************************************************************************************** PP

                  TT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BTT CS
          KR   98 eemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwae 180 
                   +++  +l+ vl  K++Ga +L+ell d++ld fvlf+Siag++gs gqa Yaa+Na+lDa+ae rr++gl+a+s++wg+wa+
  KIR65889.1 7528 VDTDLGRLAGVLTGKIAGAVHLDELLGDRPLDAFVLFASIAGIWGSGGQAGYAAGNAYLDAIAERRRARGLAATSVAWGPWAD 7610
                  *********************************************************************************86 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.1   0.1   8.2e-48   5.9e-45       1     117 [.     292     409 ..     292     410 .. 0.99
   2 !  153.3   0.2   3.4e-48   2.4e-45       1     117 [.    2364    2481 ..    2364    2482 .. 0.99
   3 !  151.2   0.9   1.6e-47   1.2e-44       1     117 [.    4452    4569 ..    4452    4570 .. 0.99
   4 !  154.1   0.8   1.9e-48   1.4e-45       1     117 [.    6521    6636 ..    6521    6637 .. 0.98
   5 ?   -2.4   0.0       6.4   4.6e+03      11      60 ..    7290    7338 ..    7281    7349 .. 0.78

  Alignments for each domain:
  == domain 1  score: 152.1 bits;  conditional E-value: 8.2e-48
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-GGG CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHleaA 93 
                      +avi+gsavnsdga+ +ltapng aq+r+i++al++ag++p+dvd+veahgtgt+lgDpiE++al +++g+++  ++pl++gS Ksn+GH++aA
       KIR65889.1 292 LAVIRGSAVNSDGASSGLTAPNGPAQQRVIRQALDNAGLTPADVDVVEAHGTGTRLGDPIEAQALLATYGRDRPaDRPLWLGSLKSNLGHTQAA 385
                      69**********************************************************************99*9****************** PP

                      HHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  94 aGvaelikvvlalkhgvipptlnl 117
                      aGva++ik+vla++hg +p+tl+ 
       KIR65889.1 386 AGVAGVIKMVLAMRHGLLPATLHA 409
                      **********************96 PP

  == domain 2  score: 153.3 bits;  conditional E-value: 3.4e-48
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       +av++gsavnsdga+n+ltapng +q+r+i++ala+a+++p+dvd veahgtgt+lgDpiE++al +++g+++  ++pl +gS+KsniGH++
       KIR65889.1 2364 LAVVRGSAVNSDGASNGLTAPNGPSQQRVIRQALANARLTPADVDAVEAHGTGTTLGDPIEAQALLATYGQDRPaDRPLLLGSIKSNIGHTQ 2455
                       69**********************************************************************99*9**************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaGva++ik+vlal+hg +pptl++
       KIR65889.1 2456 AAAGVAGVIKMVLALRHGLVPPTLHV 2481
                       *************************8 PP

  == domain 3  score: 151.2 bits;  conditional E-value: 1.6e-47
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       +av++gsa+n+dga+ +ltapng +q+r+i++ala+a+++p+dvd veahgtgt+lgDpiE++al +++g+++  ++pl +gS+KsniGH++
       KIR65889.1 4452 LAVVRGSAINQDGASSGLTAPNGPSQQRVIRQALANARLTPADVDAVEAHGTGTALGDPIEAQALLATYGQDRPaDRPLLLGSIKSNIGHAQ 4543
                       69**********************************************************************99*9**************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaGva++ik+v+a++hg++p+tl++
       KIR65889.1 4544 AAAGVAGVIKMVMAMRHGQLPATLHV 4569
                       *************************8 PP

  == domain 4  score: 154.1 bits;  conditional E-value: 1.9e-48
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GG CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHlea 92  
                       +av++g+avn+dga+n+ltapng +q+r+i++ala+a+++p+dvd veahgtgt+lgDpiE++al +++g+++ + pl +gS+Ksn+GH++a
       KIR65889.1 6521 LAVVRGTAVNQDGASNGLTAPNGPSQQRVIRQALANARLTPADVDAVEAHGTGTTLGDPIEAQALLATYGQDR-ETPLLLGSIKSNMGHTQA 6611
                       69*********************************************************************99.88**************** PP

                       GHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   93 AaGvaelikvvlalkhgvipptlnl 117 
                       AaGva++ik+++a++hgv+pptl++
       KIR65889.1 6612 AAGVAGIIKMIMAMRHGVVPPTLHV 6636
                       ************************8 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 6.4
                       E--.STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHH CS
  Ketoacyl-synt_C   11 sdg.ahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpi 60  
                         + + ++   p g a+  a+++al +ag + ++   v   + gt  gD++
       KIR65889.1 7290 D-DpHPQHPAVPVGTAATLALAQALHDAGAS-ATLWCVTRGAVGTGDGDAV 7338
                       4.43667777899999999**********98.7888888888888888876 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.4   8.2   3.3e-56   2.3e-53       1     291 [.     937    1204 ..     937    1209 .. 0.89
   2 !  188.8   6.4   1.7e-58   1.2e-55       1     295 [.    3010    3284 ..    3010    3287 .. 0.92
   3 !  185.7   5.5   1.5e-57   1.1e-54       1     295 [.    5103    5370 ..    5103    5373 .. 0.92

  Alignments for each domain:
  == domain 1  score: 181.4 bits;  conditional E-value: 3.3e-56
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hpllG+ vr a d+e v   rl+++ +pwL+DH+v g vv+Pga+ +e+++ A+ ++     a ++r+++i ++l+lp  e+v+vq+++ +++d+ +
  KIR65889.1  937 HPLLGAAVRLAGDDEAVLTGRLSVSTHPWLADHVVSGAVVVPGAALVELVVRAGDEVG----ASRVRELTIAAPLTLPAAEAVRVQVRVGAADDSGA 1029
                  9********************************************************9....677***************************77766 PP

                  ....EEEEEEE-SS-TT...EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEE.TTEEEEEE-- CS
       PS-DH   98 rawvefeifSregggee..wtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrg.dgealaelrl 191 
                      e++++++ +++ +  w +ha+G ++ a++++      +++   +++pa +++++ a +Y ++a+ gl yGp Fqglr++w++ dg+++ae++l
  KIR65889.1 1030 ---REVTVHAQPDDEPDaeWIRHAEGVLEPAAAEE------PTV--GAWPPAGATEAELAGWYPAFAEHGLAYGPVFQGLRRVWTNpDGDVYAEVAL 1115
                  ...6999999999998899**********777666......344..666777777788888*************************999******** PP

                  -GGGSSTTTT-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEESEEE CS
       PS-DH  192 peelaggesayvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieglrl 288 
                  p+e+a+++  + +hPallDaal+ +++    +a   + +++P+a+  ++v+    a+ +    ++rl+++g   + ++l++vde+G +v++++ l l
  KIR65889.1 1116 PDEAAADATGFGVHPALLDAALHPIGL---LDAGTGTGPRVPFAFTGVQVHA---AGAR--ALRVRLSRAG---AGVRLVAVDESGSPVVSVDSLVL 1201
                  ********99*************6654...56789****************6...4444..4555555554...4699*****************99 PP

                  EE- CS
       PS-DH  289 rrv 291 
                  r  
  KIR65889.1 1202 REM 1204
                  976 PP

  == domain 2  score: 188.8 bits;  conditional E-value: 1.7e-58
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hpllG+ vr a d+evv   rl+++ +pwL+DH+v g vv+Pga+ +e+++ A+ ++     a ++r+++i ++l+lp  e+v+vq+++ +++d+ +
  KIR65889.1 3010 HPLLGAAVRLAGDDEVVLTGRLSVSTHPWLADHVVSGAVVVPGAALVELVVRAGDEAG----ASRVRELTIAAPLTLPAAEAVRVQVRVGAADDSGA 3102
                  9********************************************************9....777***************************77776 PP

                  ....EEEEEEE-SS-TT.......EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEE CS
       PS-DH   98 rawvefeifSregggee......wtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealae 188 
                      e++++++ +g+++      w++ha G ++ a +++      +++    ++p+ +++v+ + +Y++l   gl yGp Fqglr++w+gdg+++ae
  KIR65889.1 3103 ---REVTVHAQPDGDGDgdgdaeWVRHADGVLEPAVAEE------PTV--GVWPPVGVSEVDLSGWYDALVGHGLAYGPVFQGLRRVWAGDGDVYAE 3188
                  ...699999999888888999************887777......444..789999999************************************** PP

                  E---GGGSSTTTT-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEES CS
       PS-DH  189 lrlpeelaggesayvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieg 285 
                  ++lp+++a++++++ lhPallDaal+ +++     ae+a  +++P+a+  ++++    a+ + l+v+  ++++g     ++l++vd++G +v++++ 
  KIR65889.1 3189 VALPDDVAESAGRFGLHPALLDAALHPIGL---LSAEEASGPRVPFAFAGVQMHA---AGASVLRVRLSRAGSG-----VRLVAVDDSGSPVVSVDS 3274
                  **************************6654...4579*****************6...6677888888887776.....89**************** PP

                  EEEEE--XXX CS
       PS-DH  286 lrlrrverea 295 
                  l lr ++  a
  KIR65889.1 3275 LVLRELTGVA 3284
                  ****998766 PP

  == domain 3  score: 185.7 bits;  conditional E-value: 1.5e-57
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hpllG+ vr a d+e+v   rl+++ +pwL+DH++ g vv+Pga+ +e+++ A+ ++     a ++r+++i ++l+lp +++v+vq+++  ++d+ +
  KIR65889.1 5103 HPLLGAAVRLAGDDEIVLTGRLSVSTHPWLADHVISGAVVVPGAALVELVVRAGDEVG----ASRVRELTIAAPLTLPVSGGVRVQVRVGSADDSGA 5195
                  9********************************************************9....677***************************77666 PP

                  ....EEEEEEE-SS-TT...EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE--- CS
       PS-DH   98 rawvefeifSregggee..wtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealaelrlp 192 
                      e++++++ +++++  w++ha G ++ a +++      +     +++p+ +++v+ + +Y++l   gl yGp Fqglr++w+gdge  ae++lp
  KIR65889.1 5196 ---REVTVHAQPDEDADaeWVRHAVGVLESAVAEE------PV--VGQWPPVGMSEVDLSGWYDALVGHGLAYGPVFQGLRRVWTGDGELCAEVALP 5281
                  ...6999999999998899**********777666......34..5999************************************************ PP

                  GGGSSTTTT-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEESEEEE CS
       PS-DH  193 eelaggesayvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieglrlr 289 
                  e++a ++sa+ +hPallDaal+ ++       ++ + +++P+a++ ++v+    a+ + l+v++ ++++g     ++l++vd++G +v++++ l lr
  KIR65889.1 5282 ESAA-DASAFGVHPALLDAALHPIG-----LLDAGTGPRVPFAFSGVQVHA---AGASVLRVRMSRAGSG-----VRLVAVDDSGSPVVSVDSLVLR 5364
                  **99.6678*************773.....34799***************7...7788999999998887.....89******************** PP

                  E--XXX CS
       PS-DH  290 rverea 295 
                   ++  a
  KIR65889.1 5365 ELTGVA 5370
                  998765 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   1.8e-15   1.3e-12       1     111 [.     412     531 ..     412     532 .. 0.88
   2 !   57.8   0.0   1.9e-18   1.3e-15       1     112 []    2484    2609 ..    2484    2609 .. 0.92
   3 !   53.5   0.0   3.9e-17   2.8e-14       1     110 [.    4572    4692 ..    4572    4694 .. 0.93
   4 !   43.3   0.0   5.9e-14   4.2e-11       1     112 []    6639    6757 ..    6639    6757 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 1.8e-15
  KAsynt_C_assoc   1 PnpeipaleegrlkVvteptpwpggi.....vgvNsfGfGGsnvHviLksnkkekrkeesk..eeslprL.lvlsgrteeaveallekleehlld 87 
                     P p+++ ++ g + + t++ pw+g++     ++v+sfG++G+n+H++L++++ ++++ +++   ++lp + ++ls+ +++a+ a++ + +++l+ 
      KIR65889.1 412 PTPHVD-WTGGAVALLTQARPWTGDAgrprrAAVSSFGMSGTNAHLVLEQAPPPEPAAATEapARELPAVpVLLSAAHPAALAAQAGRWAAWLDA 505
                     99****.*****************9999***********************97777776665556666544999********************* PP

  KAsynt_C_assoc  88 aellsllneilseeisr..lpyRGya 111
                     +++ + ++ + s+ ++r  l+ R+ +
      KIR65889.1 506 DADARPVDVAWSSVTARaaLDSRAVV 531
                     99999999999888877677777766 PP

  == domain 2  score: 57.8 bits;  conditional E-value: 1.9e-18
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk.........eeslprLlvlsgrteeaveallek 80  
                      P+++i+ +++g +++ t++ pwp       ++v+sfG++G+n+H+i+++++  +++++++          +     l++s+r++ a+++++++
      KIR65889.1 2484 PSEHID-WTSGAVTLTTTAAPWPAVDrprrAAVSSFGISGTNAHAIIEQAPADTPTPRPErpavpspglVAADAAPLLVSARSARALRDQAAR 2575
                      899***.***************99888999*********************8888777777789999997777778899************** PP

  KAsynt_C_assoc   81 leehlldaellsllneilseeisr..lpyRGyav 112 
                      l++hl+d + ++l++ ++s ++ r  +pyR  +v
      KIR65889.1 2576 LRTHLADGPAHDLVDLAYSLATGRahHPYRQVTV 2609
                      *************9999999988888****9887 PP

  == domain 3  score: 53.5 bits;  conditional E-value: 3.9e-17
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk......eeslprLlvlsgrteeavealleklee 83  
                      P+++i+ ++ g + +  ep pwp+      ++v+sfG++G+nvH iL+++++++++++ +      + +l +  vls+rt +a+ +++ +l++
      KIR65889.1 4572 PSEHID-WSAGAVSLLAEPRPWPEVDrprrAAVSSFGISGTNVHTILEQAPEATPAPTVTvpaaitTGDLTTPCVLSARTGDALAEQARRLRD 4663
                      899***.****************9988999*********************999999999999999999************************ PP

  KAsynt_C_assoc   84 hlldaellsllneilseeisr..lpyRGy 110 
                      +l +++ + l +  ++ ++ r  +++R+ 
      KIR65889.1 4664 WLGENPSVGLPDLGHALATGRsaFEHRAV 4692
                      *********98888887777766999975 PP

  == domain 4  score: 43.3 bits;  conditional E-value: 5.9e-14
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeeskeeslprL..lvlsgrteeaveallekleehlld 87  
                      P+p+i+ ++ g + + te+tpwp       ++v+sfG++G+n+Hvi+++++ e  +    e+  p +  ++ls+rt+ a+  ++ + + +l+ 
      KIR65889.1 6639 PSPHID-WAAGAVALATEATPWPVVDrprrAAVSSFGISGTNAHVIIEQPPVEVVEGVVVERVVPPVvpVLLSARTDGALAGQAGRWARWLAG 6730
                      99****.***************98877889*********************877777666555555512678*******************99 PP

  KAsynt_C_assoc   88 aellsllneilseeisr..lpyRGyav 112 
                      +  l+ ++ + s+ ++r  l+ R+ +v
      KIR65889.1 6731 DGSLAAVDVAWSSVTTRpaLEQRAVVV 6757
                      999999999999988888888888776 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1         1   7.2e+02      14      54 ..     821     865 ..     808     892 .. 0.72
   2 !   67.4   0.2   3.6e-21   2.6e-18       4     133 .]    1589    1721 ..    1587    1721 .. 0.78
   3 !   70.8   0.1   3.2e-22   2.3e-19       9     133 .]    3687    3813 ..    3680    3813 .. 0.79
   4 !   68.3   0.2   1.9e-21   1.3e-18       9     133 .]    5757    5883 ..    5750    5883 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 1
                   HH...HHH-TT-EEEEEES-H.HHHH.HHHHHHEEEEEEEEE--.- CS
  ADH_zinc_N_2  14 fe...aatggegvDvvldtvg.gealleaslkvlpggGrlvsig.g 54 
                   f+   aa++++gvD  l+  g +  l + + ++lp+gG++v ++ +
    KIR65889.1 821 FAdgvAALRSAGVDTFLEV-GpQSVLTALTAEALPDGGDVVAVAaQ 865
                   345557888999******7.53666657777999999****99944 PP

  == domain 2  score: 67.4 bits;  conditional E-value: 3.6e-21
                    SEEE.ETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.....-HHH CS
  ADH_zinc_N_2    4 devi.dyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas....aqadi 89  
                    +e i  +r+++fe    +a gg+gvDvvld+++ge +++asl++lp gGr++++g++ +++a++  ++     +  +   f++++     ++++ 
    KIR65889.1 1589 QERIgSSRSTEFEavfaSASGGAGVDVVLDALAGE-FVDASLRLLPRGGRFIEMGKTDIRDADAVAQL-H---PGVAYRAFDLNEAgserIGQM- 1677
                    5666566789999999877789***********99.66*******888*******7543333333333.3...333333333333456655666. PP

                    HHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2   90 leelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133 
                    l el+al+e+G+l p + rv++  +a++A+r+l +++++GK+Vl
    KIR65889.1 1678 LGELLALFESGALSPLPVRVWDVRQARQALRHLSQAKHVGKVVL 1721
                    *******************************************8 PP

  == domain 3  score: 70.8 bits;  conditional E-value: 3.2e-22
                    TTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.....-HHHHHHHHH CS
  ADH_zinc_N_2    9 yrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas....aqadileelaa 95  
                    +r+++fe    +a gg+gvDvvld+++ge +++asl++lp gGr+v++g++   ++   +a+    ++v+y+ +  ++a     ++++ l el+a
    KIR65889.1 3687 SRSTEFEavfaSASGGAGVDVVLDALAGE-FVDASLRLLPRGGRFVEMGKT-DVRDPELVAR--QHPGVTYQAFE-LNAAggerIGQM-LGELLA 3775
                    5678888888777789***********99.66*******888*******62.2333333333..34555555544.666678966666.****** PP

                    HHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2   96 lieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133 
                    l+e+G+lrp + rv++  +a++A+r+l +++++GK+Vl
    KIR65889.1 3776 LFESGALRPLPVRVWDVRQARQALRHLSQAKHVGKVVL 3813
                    *************************************8 PP

  == domain 4  score: 68.3 bits;  conditional E-value: 1.9e-21
                    TTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.....-HHHHHHHHH CS
  ADH_zinc_N_2    9 yrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas....aqadileelaa 95  
                    +r+++fe    +a gg+gvDvvld+++ge +++asl++lp gGr+v++g++    ++++  + +  ++  +   f++++     ++++ l el+a
    KIR65889.1 5757 SRSTEFEavfaSASGGAGVDVVLDALAGE-FVDASLRLLPRGGRFVEMGKT----DVRDADAVAQLHPGVVYRAFDLNEAggerIGQM-LGELLA 5845
                    5678888888777789***********99.66*******888*******73....344444444455555666666555579956666.****** PP

                    HHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2   96 lieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133 
                    l+e+G+lrp + rv++  +a++A+r+l +++++GK+Vl
    KIR65889.1 5846 LFESGALRPLPVRVWDVRQARQALRHLSQAKHVGKVVL 5883
                    *************************************8 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   1.6e-11   1.1e-08       4      67 .]    2017    2081 ..    2014    2081 .. 0.87
   2 !   43.2   0.0     5e-14   3.6e-11       3      67 .]    4107    4172 ..    4105    4172 .. 0.93
   3 !   35.2   0.0   1.6e-11   1.1e-08       4      67 .]    6178    6242 ..    6175    6242 .. 0.87
   4 !   44.6   0.0   1.9e-14   1.4e-11       2      67 .]    7717    7783 ..    7716    7783 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.6e-11
  PP-binding    4 relvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +  +a vlg  ++++++    + +lG+DSl++vel ++l  + g++++ + +f++pt+++la++l
  KIR65889.1 2017 CGQAAAVLGHaSAQAVAGGRAFKELGFDSLTSVELRNRLASATGLRLTATLVFDYPTPERLAEHL 2081
                  56667777764555667788899****************************************97 PP

  == domain 2  score: 43.2 bits;  conditional E-value: 5e-14
  PP-binding    3 lrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +  +va vlg  +++ +dp+ ++ +lG+DSl++vel ++l  + g+++p ++ f++pt+a la++l
  KIR65889.1 4107 VAGAVAAVLGHrSADTVDPQRPFKELGFDSLTSVELRNRLATATGLRLPATVAFDYPTPAVLADFL 4172
                  77899*****75777899*********************************************986 PP

  == domain 3  score: 35.2 bits;  conditional E-value: 1.6e-11
  PP-binding    4 relvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +  +a vlg  ++++++    + +lG+DSl++vel ++l  + g++++ + +f++pt+++la++l
  KIR65889.1 6178 CGQAAAVLGHaSAQAVAGGRAFKELGFDSLTSVELRNRLASATGLRLTATLVFDYPTPERLAEHL 6242
                  56667777764555667788899****************************************97 PP

  == domain 4  score: 44.6 bits;  conditional E-value: 1.9e-14
  PP-binding    2 klrelvaevlgvplee.idpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   +r+ +a vlg p  e ++p   + dlG+DSl+avel ++l ++ g+++p + +f+hp +a++a++l
  KIR65889.1 7717 LVRAEAAAVLGHPGPErVKPRRAFKDLGFDSLTAVELRNRLTRATGLPLPTTLVFDHPDPAAVADHL 7783
                  68999*******7777478**********************************************97 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       1.1   8.2e+02      42     115 ..     816     890 ..     805     898 .. 0.67
   2 !   44.9   0.6   1.4e-14     1e-11       1      90 [.    1554    1643 ..    1554    1662 .. 0.92
   3 !   45.8   0.2   7.7e-15   5.5e-12       1      90 [.    3646    3735 ..    3646    3754 .. 0.91
   4 !   45.3   0.6   1.1e-14     8e-12       1      90 [.    5716    5805 ..    5716    5824 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.1
                 TTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHH..HCEEEEEEEEECSCTSSEEE.EEHHHHHHTT-EEEEE-SS CS
  ADH_zinc_N  42 kea.dlverikeltggegvdvvfecvGsgatleaal..kllkpgGrlvvvGggkgeee.fdlrnlllkeksilGsllg 115
                 +ea ++ + +++l    gvd  +e+ G ++++ +al  ++l  gG +v v++   + + +     +l e+++ G+ +g
  KIR65889.1 816 REAvRFADGVAALR-SAGVDTFLEV-G-PQSVLTALtaEALPDGGDVVAVAAQRRDRPeVAGLLAALAELHVHGVSVG 890
                 56667888888888.7799*99996.5.5555555422689999*******944444424444445777887777765 PP

  == domain 2  score: 44.9 bits;  conditional E-value: 1.4e-14
                  HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT.ESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC CS
  ADH_zinc_N    1 gvGlaavqlAkalGaeviavdsseeklelakklG.adevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg 90  
                  gvG+aa+qlA+++Ga+v+a++s   k   ++ lG a e i +++  ++++  +++ gg gvdvv+++++ g+ ++a+l+ll +gGr+  +G 
  KIR65889.1 1554 GVGMAAIQLAHHFGATVYATASP-GKWGTLRGLGvAQERIGSSRStEFEAVFASASGGAGVDVVLDALA-GEFVDASLRLLPRGGRFIEMGK 1643
                  9******************8765.579***************9999***********************.*****************99995 PP

  == domain 3  score: 45.8 bits;  conditional E-value: 7.7e-15
                  HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT.ESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC CS
  ADH_zinc_N    1 gvGlaavqlAkalGaeviavdsseeklelakklG.adevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg 90  
                  gvG+aa+qlA ++Ga+v+a++s   k   ++ lG a e i +++  ++++  +++ gg gvdvv+++++ g+ ++a+l+ll +gGr+v +G 
  KIR65889.1 3646 GVGMAAIQLAQHFGATVYATASP-GKWGTLRGLGvAPERIGSSRStEFEAVFASASGGAGVDVVLDALA-GEFVDASLRLLPRGGRFVEMGK 3735
                  9******************8765.579*******9999**999999***********************.*******************996 PP

  == domain 4  score: 45.3 bits;  conditional E-value: 1.1e-14
                  HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT.ESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC CS
  ADH_zinc_N    1 gvGlaavqlAkalGaeviavdsseeklelakklG.adevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg 90  
                  gvG+aa+qlA ++Ga+v+a++s   k   ++ lG a e i +++  ++++  +++ gg gvdvv+++++ g+ ++a+l+ll +gGr+v +G 
  KIR65889.1 5716 GVGMAAIQLAQHFGATVYATASP-GKWGTLRGLGvAPERIGSSRStEFEAVFASASGGAGVDVVLDALA-GEFVDASLRLLPRGGRFVEMGK 5805
                  9******************8765.579*******9999**999999***********************.*******************996 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   1.5   7.8e-13   5.6e-10       3     165 ..    1733    1896 ..    1731    1921 .. 0.84
   2 ?   -2.4   0.1       3.8   2.7e+03      22      78 ..    2795    2852 ..    2792    2854 .. 0.82
   3 !   32.0   1.9   1.1e-10   7.6e-08       3     164 ..    3825    3987 ..    3823    4011 .. 0.86
   4 !   32.9   2.6   5.8e-11   4.1e-08       3     188 ..    5895    6082 ..    5893    6088 .. 0.82
   5 !   40.6   0.1   2.4e-13   1.7e-10       2     159 ..    7432    7589 ..    7431    7623 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 7.8e-13
                  EEEESTTSHHHHHHHHHHHHTT-EEEE..EES....CHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    3 vlvtGassGIGraiakelakeGakvvv..vdr....seekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                   lvtGas+ +   +a++l++ G    +  ++r    + ++ +++++el e+ga++ a++vDv+d ++v alv+ + +   +l ++v++AG+  ++ +
  KIR65889.1 1733 TLVTGASGTLAGVVARHLVATGQARRLvlASRrlpvEGSDYAALVAELAEAGAQVSAVSVDVADPAQVAALVAGI-DPAHPLTAVVHCAGVLADSVV 1828
                  69******************99654332133312223578899********************************.78899**************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslak 165 
                   +l+++++  v+   + g+  l +a +         + v  sS+a+  +++g+  Y+A+ a++++l++  + 
  KIR65889.1 1829 TSLTADDVATVLRPKVDGAWALHEATAGL----DLSAFVVFSSIAATLGSPGQGNYAAANAFLDALAQHRRA 1896
                  ******************99988887777....45677888*****************99888888776544 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.8
                  HTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTT.SHHHHHHHHHHHHHHHSSE CS
   adh_short   22 keGakvvvvdrseekleevakelkeegakalaiqvDvt.dreevealvekavkklgkl 78  
                   +Ga v+vv+  + ++ e+++ + e   +a  i+vD + +   vea+ e+ ++ lg++
  KIR65889.1 2795 VNGAAVTVVSGDAGPVDELLATCAERDIRARRIAVDYAsHCGHVEAVREDLAAALGTI 2852
                  589***********************99********9945556666666777777766 PP

  == domain 3  score: 32.0 bits;  conditional E-value: 1.1e-10
                  EEEESTTSHHHHHHHHHHHHTT-EEEE..EES....CHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    3 vlvtGassGIGraiakelakeGakvvv..vdr....seekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                   lvtGas+ +   +a++l++ G +  +  ++r    + ++ +++++el  +ga+++a++vDv+d  +v  lv+ + + + +l ++v+ AG+  ++++
  KIR65889.1 3825 TLVTGASGTLAGVVARHLVATGQSRRLvlASRrlpvEGSDYAALVAELTGAGAQVTAVSVDVADPVQVAGLVAGI-DPVHPLTAVVHTAGVIADATI 3920
                  69********************875542133312223567889999***99***********************9.999****************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrsla 164 
                   +ls + + +v+   + g+  l +a +         + v  sS+a+  +++g+  Y+A+ a++++l++  +
  KIR65889.1 3921 GSLSVDGVAAVMRPKVDGAWALHEATAGL----DLSAFVVFSSIAATLGSPGQGNYAAANAFLDALAQHRR 3987
                  ******************99998887777....45677888******************999998887655 PP

  == domain 4  score: 32.9 bits;  conditional E-value: 5.8e-11
                  EEEESTTSHHHHHHHHHHHHTT-EEEE..EES....CHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    3 vlvtGassGIGraiakelakeGakvvv..vdr....seekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                   lvtGas+ +   +a++l++ G    +  ++r    + ++ +++++el  +ga+++a++vDv+d+ +v alv+ + +   +l ++v+ AG+  ++++
  KIR65889.1 5895 TLVTGASGTLAGVVARHLVATGQARRLvlASRrlpvEGSDYAALVAELTGAGAQVTAVSVDVADAGQVAALVAGV-DPAHPLTAVVHTAGVIADATI 5990
                  69******************9965433213331222356788999****99***********************9.78899**************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHH.HGGGTEEEEEEEESSBSSHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslake.laptgirvnavaPGlvdTdmak 188 
                   +ls + + +v+   + g+  l +a +         + v  sS+a+  +++g+  Y+A+ a++++l++  + + l  t+i   + a+G+++ ++ +
  KIR65889.1 5991 GSLSVDGVAAVLRPKVDGAWALHEATAGL----DLSAFVVFSSIAATLGSPGQGNYAAANAFLDALAQHRRAQgLPATSIGWGMWATGGMAAQLSA 6082
                  ******************99998887777....45677888*******************999999987765513444466666666666666655 PP

  == domain 5  score: 40.6 bits;  conditional E-value: 2.4e-13
                  EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHH...HHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGG CS
   adh_short    2 vvlvtGassGIGraiakelakeGakvvv.vdrseek...leevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfs 94  
                  +vlvtG+++ +G  +a+  a +Ga+++v ++r+ e+   ++e+ +el ++g +++++++Dv+dr++v al++++ ++  +l ++v+ AG++ ++p  
  KIR65889.1 7432 TVLVTGGTGALGAHVARWAAGSGAEHLVlTSRRGEDapgAAELRDELTALGVRVTVAACDVADRDAVAALLARVDADPAPLTAVVHAAGLNDVAPLV 7528
                  79***********************9997778777622246777788888****************************************9999999 PP

                  GCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHH CS
   adh_short   95 elseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagl 159 
                  +++  +   v+   + g+++l +++     ++   + v  +S+ag  ++ g+a Y+A  a ++++
  KIR65889.1 7529 DTDLGRLAGVLTGKIAGAVHLDELLG----DRPLDAFVLFASIAGIWGSGGQAGYAAGNAYLDAI 7589
                  99999988888888888888765543....45666788888888888888888888876655555 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   1.4e-08   9.8e-06      51     116 ..     174     237 ..     167     249 .. 0.92
   2 !   34.5   0.2   1.9e-11   1.4e-08      51     118 ..    2246    2311 ..    2243    2329 .. 0.89
   3 !   24.9   0.1   1.6e-08   1.1e-05      55     120 ..    4338    4401 ..    4332    4416 .. 0.83
   4 ?   -0.3   0.0      0.76   5.4e+02      82     178 ..    6175    6269 ..    6162    6271 .. 0.79
   5 !   31.1   0.2   2.1e-10   1.5e-07      54     117 ..    6406    6467 ..    6398    6487 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.4e-08
                 EHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEEST CS
  Thiolase_N  51 GnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsms 116
                 G vl++ + + i+  +a   g+  e pavt++ +csS+l a++la q+++ ge+  +vagGv  m 
  KIR65889.1 174 GYVLTGTAASVISGRLAYSFGL--EGPAVTIDTACSSSLVALHLAGQALRDGECTLAVAGGVSVMA 237
                 7788888999999999999999..99************************************9986 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 1.9e-11
                  EHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS CS
  Thiolase_N   51 GnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsna 118 
                  G  l++ +g+  +  +a   g+  e pavtv+ +csS+l a++laaq++++ge+d+++agGv  m + 
  KIR65889.1 2246 GHLLTGTAGSVASGRVAYTFGF--EGPAVTVDTACSSSLVALHLAAQALRSGECDMALAGGVALMAQP 2311
                  6677888888888899999999..99************************************999875 PP

  == domain 3  score: 24.9 bits;  conditional E-value: 1.6e-08
                  CTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS-E CS
  Thiolase_N   55 qagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsnapt 120 
                  ++ +g+  +  ++   g+  e pavtv+ +csS+l a++laaq+++  e+  ++agGv  ms+  +
  KIR65889.1 4338 NGSAGSVASGRISYLFGL--EGPAVTVDTACSSSLVALHLAAQALRQNECGLALAGGVSVMSTPGM 4401
                  556666666666667777..889***************************************8655 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.76
                  EHGGGHHHHHH.HHHHHHHHTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHH CS
  Thiolase_N   82 nkvcsSglkav.alaaqsiaageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefA 177 
                  + vc+ +++ + ++ aq++a g+a  +   G  s++ ++ +++ ++ +gl+l ++ + d   p+ la+  +e ++G++a   a + ++ R++ d  A
  KIR65889.1 6175 ELVCGQAAAVLgHASAQAVAGGRA--FKELGFDSLTSVELRNRLASATGLRLTATLVFDYPTPERLAEHLHE-QLGHSAAPAATTRAVARDDDDPIA 6268
                  555655544442333555555554..445799********************************88887765.68******************9998 PP

                  H CS
  Thiolase_N  178 v 178 
                  +
  KIR65889.1 6269 I 6269
                  7 PP

  == domain 5  score: 31.1 bits;  conditional E-value: 2.1e-10
                  SCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N   54 lqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117 
                  +++ +g+  +  +a   g+  e pavtv+ +csS+l a++laaq++++ge+d ++agGv  m +
  KIR65889.1 6406 VNGTAGSVASGRVAYVFGL--EGPAVTVDTACSSSLVALHLAAQALRSGECDLALAGGVTVMAT 6467
                  5667777777788888888..89************************************99976 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.4e-09   1.7e-06       2      61 ..    1435    1491 ..    1434    1498 .. 0.92
   2 !   30.8   0.0     3e-10   2.1e-07       1      60 [.    3526    3582 ..    3526    3587 .. 0.94
   3 !   31.7   0.0   1.5e-10   1.1e-07       1      60 [.    5596    5652 ..    5596    5658 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.4e-09
                  TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE CS
       ADH_N    2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvv 61  
                  g+v+i v+a+g++  D+ i+ g   +   +   +G E +G+v evgp+v++l+ GdrV+ 
  KIR65889.1 1435 GQVRIAVRATGVNFRDVLIALG---MYPDAAARMGSEGAGVVLEVGPGVDGLAPGDRVFG 1491
                  79********************...67777788*************************75 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 3e-10
                  TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEE CS
       ADH_N    1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVv 60  
                  pgev+i v+aag++  D+ i+ g   +   +  ++G E +G+v evgp+v++l+ GdrV+
  KIR65889.1 3526 PGEVRIAVRAAGVNFRDVLIALG---MYPDPSAVMGSEGAGVVLEVGPGVDDLSPGDRVF 3582
                  689********************...6888889*************************97 PP

  == domain 3  score: 31.7 bits;  conditional E-value: 1.5e-10
                  TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEE CS
       ADH_N    1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVv 60  
                  pgev+i+v+aag++  D+ i+ g   +   +  ++G E +G+v evgp+v++l+ GdrV+
  KIR65889.1 5596 PGEVRIEVRAAGVNFRDVLIALG---MYPDPSAVMGSEGAGVVLEVGPGVDDLSPGDRVF 5652
                  689********************...6888889*************************97 PP

>> PKS_DE  Polyketide synthase dimerisation element domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2       5.4   3.9e+03       8      31 ..    1768    1790 ..    1767    1790 .. 0.83
   2 !   49.0   7.3   8.9e-16   6.4e-13       1      43 [.    7155    7198 ..    7155    7199 .. 0.92
   3 ?   -1.5   0.1       5.6     4e+03      10      28 ..    7382    7401 ..    7381    7419 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 5.4
      PKS_DE    8 VereDlaaLaatLgldadasLsav 31  
                  Ve  D aaL a+L+ ++++ +sav
  KIR65889.1 1768 VEGSDYAALVAELAEAGAQ-VSAV 1790
                  9************997555.7765 PP

  == domain 2  score: 49.0 bits;  conditional E-value: 8.9e-16
      PKS_DE    1 DaaFWaaVereDlaaLaatLgldada..sLsavLPaLsaWRrrrr 43  
                  Da+FWaaVer+Dl+aLaa+Lg d +a  +L+++LPaL++WRr r 
  KIR65889.1 7155 DAEFWAAVERGDLTALAAQLGDD-TAldALAPALPALTTWRRART 7198
                  9*********************7.44578*************996 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 5.6
      PKS_DE   10 reDlaaLaatLgldada.sL 28  
                  r D+a Laa+L +++d+ +L
  KIR65889.1 7382 RVDPARLAAALTAAGDEdQL 7401
                  5699********95554333 PP

>> Docking  Erythronolide synthase docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   5.6   1.8e-12   1.3e-09       1      26 []       2      27 ..       2      27 .. 0.98

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.8e-12
     Docking  1 anEeKLRdYLKRvTaDLrqtRrRLrE 26
                a+EeKL++ LK+vT++Lrq+ rRLrE
  KIR65889.1  2 ADEEKLLEHLKWVTTELRQAHRRLRE 27
                8************************9 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.4   0.00083      0.59       2     118 ..    1734    1871 ..    1733    1886 .. 0.75
   2 !    6.9   0.4    0.0053       3.8       2     117 ..    3826    3962 ..    3825    3982 .. 0.76
   3 !    6.2   0.8    0.0088       6.3       2     117 ..    5896    6032 ..    5895    6048 .. 0.76
   4 !   21.3   0.3   2.2e-07   0.00015       1      76 [.    7433    7523 ..    7433    7535 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00083
                  EEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC...........EEEE--TT-HHHHHHHHHHHT-....SEEEE--S.---HHHH CS
   Epimerase    2 lVtGatGfiGsalvkallekg..yevigldrlssasntarledl...........elveldltdrsalerlfkeeqp....davihlAa.vggvaas 80  
                  lVtGa+G +   ++++l + g   +++  +r+    + +  + l           + v +d+ d++++++l++  +p    +av+h+A+  ++  ++
  KIR65889.1 1734 LVTGASGTLAGVVARHLVATGqaRRLVLASRR-LPVEGSDYAALvaelaeagaqvSAVSVDVADPAQVAALVAGIDPahplTAVVHCAGvLADSVVT 1829
                  8********************74334444444.333322223336899******************99999986444222389******88877666 PP

                  HHSHHH...HHHHHTHHHHHHHHHHHHHTCTEEEEEEE.GGG CS
   Epimerase   81 sedpad...fieknlqgtlnlleaarkagvkrllflsS.sev 118 
                  s ++ d   +++  + g++ l ea    ++  ++ +sS +++
  KIR65889.1 1830 SLTADDvatVLRPKVDGAWALHEATAGLDLSAFVVFSSiAAT 1871
                  65555511156789************9999999999995555 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0053
                  EEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC...........EEEE--TT-HHHHHHHHHHHT-....SEEEE--S.---H... CS
   Epimerase    2 lVtGatGfiGsalvkallekg..yevigldrlssasntarledl...........elveldltdrsalerlfkeeqp....davihlAa.vggv... 77  
                  lVtGa+G +   ++++l + g     ++l++++   + +  + l           + v +d+ d+++++ l++  +p    +av+h A+ +++    
  KIR65889.1 3826 LVTGASGTLAGVVARHLVATGqsR-RLVLASRRLPVEGSDYAALvaeltgagaqvTAVSVDVADPVQVAGLVAGIDPvhplTAVVHTAGvIADAtig 3921
                  8********************633.44444443333333333336899*********************9998644333338999999965543122 PP

                  HHHHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEE.GG CS
   Epimerase   78 aassedpadfieknlqgtlnlleaarkagvkrllflsS.se 117 
                  + s++  a++++  + g++ l ea    ++  ++ +sS ++
  KIR65889.1 3922 SLSVDGVAAVMRPKVDGAWALHEATAGLDLSAFVVFSSiAA 3962
                  46888889999999999999999999999999999999555 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0088
                  EEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC...........EEEE--TT-HHHHHHHHHHHT-....SEEEE--S.---H... CS
   Epimerase    2 lVtGatGfiGsalvkallekg..yevigldrlssasntarledl...........elveldltdrsalerlfkeeqp....davihlAa.vggv... 77  
                  lVtGa+G +   ++++l + g   +++  +r+    + +  + l           + v +d+ d+ ++++l++ ++p    +av+h A+ +++    
  KIR65889.1 5896 LVTGASGTLAGVVARHLVATGqaRRLVLASRR-LPVEGSDYAALvaeltgagaqvTAVSVDVADAGQVAALVAGVDPahplTAVVHTAGvIADAtig 5991
                  8********************74334444444.333322223336899*******************9999997765333479****9965543122 PP

                  HHHHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEE.GG CS
   Epimerase   78 aassedpadfieknlqgtlnlleaarkagvkrllflsS.se 117 
                  + s++  a++++  + g++ l ea    ++  ++ +sS ++
  KIR65889.1 5992 SLSVDGVAAVLRPKVDGAWALHEATAGLDLSAFVVFSSiAA 6032
                  46888889999999999999999999999999999999444 PP

  == domain 4  score: 21.3 bits;  conditional E-value: 2.2e-07
                  EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHHHHT-S.....EEEE--S--- CS
   Epimerase    1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrsalerlfkeeqpd.....avihlAavgg 76  
                  +lVtG+tG +G+++++  +  g e ++l++++ +++ ++ e            ++  +d+ dr+a+++l++++++d     av+h+A+  +
  KIR65889.1 7433 VLVTGGTGALGAHVARWAAGSGAEHLVLTSRRGEDAPGAAELRdeltalgvrvTVAACDVADRDAVAALLARVDADpapltAVVHAAGLND 7523
                  79********************885555555444443333322569*************************98776445558888887655 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.11        82       2     127 ..    1734    1866 ..    1733    1873 .. 0.68
   2 ?   -2.2   0.0       2.5   1.8e+03       2      32 ..    3826    3857 ..    3825    3956 .. 0.77
   3 ?    0.1   0.1       0.5   3.6e+02       2      85 ..    5896    5982 ..    5895    6032 .. 0.67
   4 !   16.0   0.0     7e-06     0.005       1      94 [.    7433    7529 ..    7433    7552 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
                       EEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-....SEEEE----. CS
  Polysacc_synt_2    2 lvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkv....dvvfhaAAl. 87  
                       lvtGa+G++   + r+++++ ++++++l +r      +    l +el++     ++ +v  dv+d ++++ ++  +++     +v+h+A + 
       KIR65889.1 1734 LVTGASGTLAGVVARHLVATgQARRLVLASRRLPVEGSDYAALVAELAEAGA--QVSAVSVDVADPAQVAALVAGIDPahplTAVVHCAGVl 1823
                       8***************999979999999998755555444555566666555..44578889999999999887544411116799988541 PP

                       ..--HHH.HHHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEE CS
  Polysacc_synt_2   88 ..KhVPl.veenpleaiktNvlgtenvieaaieagvkkvvliS 127 
                           V       ++ +++  v g+  + ea+   + +++v+ S
       KIR65889.1 1824 adSVVTSlTADDVATVLRPKVDGAWALHEATAGLDLSAFVVFS 1866
                       1133433033455566677777777777777777777777777 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.5
                       EEETTTSHHHHHHHHHHHHH.B-SEEEEEES- CS
  Polysacc_synt_2    2 lvtGagGsiGselvrqilkk.kpkkiillerd 32  
                       lvtGa+G++   + r+++++ + ++++l +r 
       KIR65889.1 3826 LVTGASGTLAGVVARHLVATgQSRRLVLASRR 3857
                       8**************99998788888888875 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.5
                       EEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-....SEEEE-- CS
  Polysacc_synt_2    2 lvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkv....dvvfhaA 85  
                       lvtGa+G++   + r+++++ ++++++l +r      +    l +el+      ++++v  dv+d+ +++ ++  +++     +v+h+A
       KIR65889.1 5896 LVTGASGTLAGVVARHLVATgQARRLVLASRRLPVEGSDYAALVAELTGAGA--QVTAVSVDVADAGQVAALVAGVDPahplTAVVHTA 5982
                       8***************999879999999998754444444445555555444..44577778888888877776443311114566666 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 7e-06
                       EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-S.....EEEE---- CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvd.....vvfhaAAl 87  
                       vlvtG++G++G ++ r  + + +++++l +r        + el++el++  l v++++  +dv+d++ ++ +l +++ d     +v+haA l
       KIR65889.1 7433 VLVTGGTGALGAHVARWAAGSGAEHLVLTSRRGEDAPGAA-ELRDELTA--LGVRVTVAACDVADRDAVAALLARVDADpapltAVVHAAGL 7521
                       89***************************99877665544.35556666..455666889*************9887654444489****99 PP

                       --H.HHHH CS
  Polysacc_synt_2   88 KhV.Plve 94  
                         V Plv+
       KIR65889.1 7522 NDVaPLVD 7529
                       98856665 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.28     2e+02       1      77 [.    1734    1810 ..    1734    1869 .. 0.77
   2 ?   -2.8   0.0       4.4   3.1e+03       1      76 [.    3826    3901 ..    3826    3918 .. 0.72
   3 ?   -0.2   0.0       0.7     5e+02       1      77 [.    5896    5972 ..    5896    6000 .. 0.77
   4 !   15.4   0.0   1.3e-05    0.0093       1      77 [.    7434    7508 ..    7434    7530 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.28
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEE.EESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-S CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivr.rsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpd 77  
                     L+TG +G     +a++L++ g+    +   r   ++ +  ++l  +  +e+  +++ +++D+ D +++  l+a ++p 
     KIR65889.1 1734 LVTGASGTLAGVVARHLVATGQARRLVLAsRRLPVEGSDYAALVAE-LAEAGAQVSAVSVDVADPAQVAALVAGIDPA 1810
                     8******************998665544314444444555555543.4566789*******************99884 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.4
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEE.EESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT- CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivr.rsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqp 76  
                     L+TG +G     +a++L++ g+    +   r   ++ +  ++l  +  + +  +++ +++D+ D  ++  l+a ++p
     KIR65889.1 3826 LVTGASGTLAGVVARHLVATGQSRRLVLAsRRLPVEGSDYAALVAEL-TGAGAQVTAVSVDVADPVQVAGLVAGIDP 3901
                     89*****************9987655443144444444555555433.34567999*********999999999866 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.7
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEE.EESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-S CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivr.rsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpd 77  
                     L+TG +G     +a++L++ g+    +   r   ++ +  ++l  +  + +  +++ +++D+ D+ ++  l+a v+p 
     KIR65889.1 5896 LVTGASGTLAGVVARHLVATGQARRLVLAsRRLPVEGSDYAALVAEL-TGAGAQVTAVSVDVADAGQVAALVAGVDPA 5972
                     89*****************9986655443144444444555555433.445679*******************99884 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 1.3e-05
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-S CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpd 77  
                     L+TG++G  G+++a++    g e  +++ r  + + g  ++l++ + + l  ++++  +D+ D++++  lla+v+ d
     KIR65889.1 7434 LVTGGTGALGAHVARWAAGSGAEHLVLTSRRGEDAPGA-AELRD-ELTALGVRVTVAACDVADRDAVAALLARVDAD 7508
                     9**********************999998888766555.55654.5567889*********************9765 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0091       6.6      26      48 ..     319     341 ..     291     346 .. 0.83
   2 ?   -0.3   0.0       1.1   7.8e+02      27      48 ..    2392    2413 ..    2371    2425 .. 0.83
   3 ?    0.4   0.0      0.67   4.8e+02      28      78 ..    4481    4507 ..    4472    4520 .. 0.63
   4 ?   -2.5   0.0       5.5   3.9e+03      40      77 ..    5510    5544 ..    5476    5551 .. 0.74
   5 ?   -0.3   0.0       1.1     8e+02      27      48 ..    6549    6570 ..    6530    6582 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0091
                 HHHHHHHHHHT--GGGESEEEE- CS
  Thiolase_C  26 yaikkvlkkagltvedidlfEin 48 
                  +i+++l++aglt +d+d++E++
  KIR65889.1 319 RVIRQALDNAGLTPADVDVVEAH 341
                 5899*****************98 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.1
                  HHHHHHHHHT--GGGESEEEE- CS
  Thiolase_C   27 aikkvlkkagltvedidlfEin 48  
                  +i+++l +a lt +d+d++E++
  KIR65889.1 2392 VIRQALANARLTPADVDAVEAH 2413
                  6888999999999999999887 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.67
                  HHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH CS
  Thiolase_C   28 ikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaial 78  
                  i+++l +a lt +d+d++E                         +G   al
  KIR65889.1 4481 IRQALANARLTPADVDAVE------------------------AHGTGTAL 4507
                  4555555555555555555........................55555555 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 5.5
                  GGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHH CS
  Thiolase_C   40 edidlfEinEAFaaqaLavakaldldlekvNvnGGaia 77  
                  + i l + +EA   qaLav+ ++  dl+ v   GG +a
  KIR65889.1 5510 DRIVLADTDEAIGPQALAVLATVAADLSTV---GGQLA 5544
                  55788899*************999998765...55555 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 1.1
                  HHHHHHHHHT--GGGESEEEE- CS
  Thiolase_C   27 aikkvlkkagltvedidlfEin 48  
                  +i+++l +a lt +d+d++E++
  KIR65889.1 6549 VIRQALANARLTPADVDAVEAH 6570
                  6888999999999999999887 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   1.2    0.0063       4.5       2      67 ..    1734    1809 ..    1733    1822 .. 0.86
   2 ?    3.2   1.9     0.079        57       2      72 ..    3826    3906 ..    3825    3925 .. 0.81
   3 ?    5.4   3.1     0.016        12       2      72 ..    5896    5976 ..    5895    5992 .. 0.85
   4 ?   13.1   0.2   7.5e-05     0.053       1      66 [.    7433    7506 ..    7433    7511 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0063
                  EESSTTSHHHHHHHHHHHHHT-EEEEEES-S........-SHHHHHHHHSTTEE..EES-TT-HHHHHHHHTT-SE CS
        NmrA    2 lviGaTGrqGksvvrallkaghkvralvRdt........kselakslkeaGvel..vkgdlddkeslvealkgvdv 67  
                  lv+Ga+G +++ v+r+l++ g   r ++              l+++l+eaG+++  v+ d+ d + +++++ g d 
  KIR65889.1 1734 LVTGASGTLAGVVARHLVATGQARRLVLASRrlpvegsdYAALVAELAEAGAQVsaVSVDVADPAQVAALVAGIDP 1809
                  79*****************998888777666778*99998999********99844689999***99999999875 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.079
                  EESSTTSHHHHHHHHHHHHHT-EEEEEES-S........-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHTT-SEEEE-- CS
        NmrA    2 lviGaTGrqGksvvrallkaghkvralvRdt........kselakslkeaGvelv..kgdlddkeslvealkgvdvvfsvt 72  
                  lv+Ga+G +++ v+r+l++ g + r ++              l+++l  aG+++   + d+ d   ++ ++ g d v   t
  KIR65889.1 3826 LVTGASGTLAGVVARHLVATGQSRRLVLASRrlpvegsdYAALVAELTGAGAQVTavSVDVADPVQVAGLVAGIDPVHPLT 3906
                  79*****************99998887766677899998889999999999877533777888888888888877776555 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.016
                  EESSTTSHHHHHHHHHHHHHT-EEEEEES-S........-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHTT-SEEEE-- CS
        NmrA    2 lviGaTGrqGksvvrallkaghkvralvRdt........kselakslkeaGvelv..kgdlddkeslvealkgvdvvfsvt 72  
                  lv+Ga+G +++ v+r+l++ g   r ++              l+++l  aG+++   + d+ d   +++++ gvd +   t
  KIR65889.1 5896 LVTGASGTLAGVVARHLVATGQARRLVLASRrlpvegsdYAALVAELTGAGAQVTavSVDVADAGQVAALVAGVDPAHPLT 5976
                  79*****************998888777666778*999989999*******88753389999************9776555 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 7.5e-05
                  EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S......-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHTT-S CS
        NmrA    1 IlviGaTGrqGksvvrallkaghkvralvRdt......kselakslkeaGvelv..kgdlddkeslvealkgvd 66  
                  +lv+G+TG++G++v+r ++ +g +  +l+           el ++l + Gv +   + d+ d++ ++++l  vd
  KIR65889.1 7433 VLVTGGTGALGAHVARWAAGSGAEHLVLTSRRgedapgAAELRDELTALGVRVTvaACDVADRDAVAALLARVD 7506
                  79******************9988888886666788998999999999**965436899**********99998 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.4    0.0088       6.3      32      57 ..    1546    1573 ..    1521    1577 .. 0.81
   2 ?    5.7   0.6     0.011       7.9      32      57 ..    3638    3665 ..    3612    3668 .. 0.81
   3 ?    5.8   0.6     0.011       7.6      29      57 ..    5705    5735 ..    5682    5738 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0088
                   EEE..STSHHHHHHHHHHHHTT-EEEEE CS
  AlaDh_PNT_C   32 lvi..GgGvaGlqAiatakglgakVtvl 57  
                   + i  G+G +G++Ai+ a+ +ga+V+++
   KIR65889.1 1546 VLIhsGAGGVGMAAIQLAHHFGATVYAT 1573
                   44445********************986 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.011
                   EEE..STSHHHHHHHHHHHHTT-EEEEE CS
  AlaDh_PNT_C   32 lvi..GgGvaGlqAiatakglgakVtvl 57  
                   + i  G+G +G++Ai+ a+ +ga+V+++
   KIR65889.1 3638 VLIhsGAGGVGMAAIQLAQHFGATVYAT 3665
                   44445********************985 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.011
                   -EEEEE..STSHHHHHHHHHHHHTT-EEEEE CS
  AlaDh_PNT_C   29 akvlvi..GgGvaGlqAiatakglgakVtvl 57  
                   ++ + i  G+G +G++Ai+ a+ +ga+V+++
   KIR65889.1 5705 GESVLIhsGAGGVGMAAIQLAQHFGATVYAT 5735
                   54444445********************985 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2     0.049        35     120     195 ..    1500    1584 ..    1483    1596 .. 0.76
   2 ?    3.5   0.2     0.077        55     113     193 ..    3585    3674 ..    3575    3683 .. 0.77
   3 ?    6.2   0.2     0.011       8.2     114     193 ..    5656    5744 ..    5645    5753 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.049
  FA_desaturase  120 rlarrrapsksrrrkwrllawlllllawlglwlalllllglall.lwlvplllllfllalvlnyveHyg.........gdwgerqv 195 
                     ++ + r++++++++ w + +++ + l++l +++al  l+gl     +l+   ++++ +a + ++++H+g         g wg+ ++
     KIR65889.1 1500 QVVAERQRVARIPAGWSYAEAASVPLVFLTAYYALHDLAGLRSGeSVLIHSGAGGVGMAAI-QLAHHFGatvyataspGKWGTLRG 1584
                     55556666666666688888888887777777777777777766*****************.*******87777777777776665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.077
  FA_desaturase  113 vlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglall.lwlvplllllfllalvlnyveHyg.........gdwger 193 
                     +++ +  r+ ++r ++++ +  w +++++ + +++l +++al  l+gl     +l+   ++++ +a + ++++H+g         g wg+ 
     KIR65889.1 3585 FEPGFGPRVVAQRLRVARVPSGWSFVEAASVPVVFLTAYYALRDLAGLRSGeSVLIHSGAGGVGMAAI-QLAQHFGatvyataspGKWGTL 3674
                     444467777777777777777799999999998777777777777777766*****************.*******777777766666665 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.011
  FA_desaturase  114 lglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglall.lwlvplllllfllalvlnyveHyg.........gdwger 193 
                     ++ +  ++ ++r ++++ +r w +++++ + +++l +++al  l+gl     +l+   ++++ +a + ++++H+g         g wg+ 
     KIR65889.1 5656 EPGFGPQVVAQRLRVARVPRGWSFVEAASVPVVFLTAYYALHDLAGLRSGeSVLIHSGAGGVGMAAI-QLAQHFGatvyataspGKWGTL 5744
                     444666777777778888888******99999888888888888888888*****************.*******777777766666665 PP

>> DUF4232  Protein of unknown function (DUF4232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.2    0.0012      0.83      33     128 ..     975    1067 ..     972    1068 .. 0.76
   2 ?    7.4   3.2    0.0063       4.5      33      92 ..    3048    3107 ..    3045    3144 .. 0.87
   3 ?    6.8   2.5    0.0096       6.9      33      98 ..    5141    5201 ..    5138    5233 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
     DUF4232   33 CtldGyPgVslldadgqqvgaaaeregpaavpvtLapGesAyaglrwtnaggdgdgectaaglrvt.ppdgtksvtvp..dlgatgtdvdvgkltvt 126 
                   ++ G + V+l+  +g++vga ++re + a+p+tL   e++++++r+ +a+++g++e t     v  +pd+++ +++   + g   + +  ++ tv+
  KIR65889.1  975 VVVPGAALVELVVRAGDEVGASRVRELTIAAPLTLPAAEAVRVQVRVGAADDSGAREVT-----VHaQPDDEPDAEWIrhAEGVL-EPAAAEEPTVG 1065
                  6789999*****999*************7777*********************998765.....454666666666665522222.22333666666 PP

     DUF4232  127 pw 128 
                  +w
  KIR65889.1 1066 AW 1067
                  66 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0063
     DUF4232   33 CtldGyPgVslldadgqqvgaaaeregpaavpvtLapGesAyaglrwtnaggdgdgecta 92  
                   ++ G + V+l+  +g+++ga ++re + a+p+tL   e++++++r+ +a+++g++e t+
  KIR65889.1 3048 VVVPGAALVELVVRAGDEAGASRVRELTIAAPLTLPAAEAVRVQVRVGAADDSGAREVTV 3107
                  6789999*****999*************7777**********************998775 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0096
     DUF4232   33 CtldGyPgVslldadgqqvgaaaeregpaavpvtLapGesAyaglrwtnaggdgdgectaaglrvt 98  
                   ++ G + V+l+  +g++vga ++re + a+p+tL   + +++++r+ +a+++g++e t+      
  KIR65889.1 5141 VVVPGAALVELVVRAGDEVGASRVRELTIAAPLTLPVSGGVRVQVRVGSADDSGAREVTV-----H 5201
                  6789999*****999*************7777*********************9988764.....3 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.3     0.021        15      15      59 ..    1775    1820 ..    1732    1828 .. 0.79
   2 ?   -1.3   0.1       1.3   9.5e+02      15      59 ..    3867    3912 ..    3825    3916 .. 0.74
   3 ?   -0.3   0.2      0.64   4.6e+02      15      59 ..    5937    5982 ..    5895    5986 .. 0.77
   4 ?   11.3   0.3   0.00018      0.13       2      64 ..    7432    7524 ..    7431    7527 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.021
                     HHHHHCTTTSEEEEEE-TTT--TTSHHHHHHHHHHH--S....EEEE-- CS
  RmlD_sub_bind   15 eLakqlaeeglevlaltreeldltdaeavaellkeakpd....vvvnaA 59  
                     +L+++lae+g++v a+   ++d++d+++va+l++ ++p+    +vv++A
     KIR65889.1 1775 ALVAELAEAGAQVSAV---SVDVADPAQVAALVAGIDPAhpltAVVHCA 1820
                     5677777777777777...99************99988766679****9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
                     HHHHHCTTTSEEEEEE-TTT--TTSHHHHHHHHHHH--S....EEEE-- CS
  RmlD_sub_bind   15 eLakqlaeeglevlaltreeldltdaeavaellkeakpd....vvvnaA 59  
                     +L+++l+ +g++v+a+   ++d++d+ +va l++ ++p     +vv++A
     KIR65889.1 3867 ALVAELTGAGAQVTAV---SVDVADPVQVAGLVAGIDPVhpltAVVHTA 3912
                     5677777777777777...899999999999998887743444777776 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.64
                     HHHHHCTTTSEEEEEE-TTT--TTSHHHHHHHHHHH--S....EEEE-- CS
  RmlD_sub_bind   15 eLakqlaeeglevlaltreeldltdaeavaellkeakpd....vvvnaA 59  
                     +L+++l+ +g++v+a+   ++d++da +va+l++ ++p+    +vv++A
     KIR65889.1 5937 ALVAELTGAGAQVTAV---SVDVADAGQVAALVAGVDPAhpltAVVHTA 5982
                     5777788888888888...889999999999988777764555788887 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.00018
                     EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.........................T--TTSHHHHHHHHHHH--S.....EEEE------H CS
  RmlD_sub_bind    2 kilvtGanGqlGseLakqlaeeglevlaltre.........................eldltdaeavaellkeakpd.....vvvnaAAytav 64  
                     ++lvtG++G+lG ++a+ +a +g+e l lt++                         ++d++d++ava+ll+ ++ d     +vv+aA   +v
     KIR65889.1 7432 TVLVTGGTGALGAHVARWAAGSGAEHLVLTSRrgedapgaaelrdeltalgvrvtvaACDVADRDAVAALLARVDADpapltAVVHAAGLNDV 7524
                     58***********************999987779*************************************7665554466699999977665 PP

>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.2     0.045        32      62      97 ..    1725    1760 ..    1715    1806 .. 0.88
   2 ?    4.3   0.2     0.052        38      62      97 ..    3817    3852 ..    3807    3898 .. 0.87
   3 ?    3.5   1.0      0.09        65      62      98 ..    5887    5923 ..    5875    5969 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.045
                  HHHH-S...-EESSHHHHHHHHHHHHHHHHCCCCGS CS
    Rhomboid   62 llfsaesesplvGaSGaifgllgallvlvprnrkll 97  
                  +++++++++++ GaSG ++g+++ +lv   ++r+l+
  KIR65889.1 1725 AAVDPDGTTLVTGASGTLAGVVARHLVATGQARRLV 1760
                  678999999******************999998876 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.052
                  HHHH-S...-EESSHHHHHHHHHHHHHHHHCCCCGS CS
    Rhomboid   62 llfsaesesplvGaSGaifgllgallvlvprnrkll 97  
                  +++++++++++ GaSG ++g+++ +lv   ++r+l+
  KIR65889.1 3817 AAVDPDGTTLVTGASGTLAGVVARHLVATGQSRRLV 3852
                  678999999*****************9998888776 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.09
                  HHHH-S...-EESSHHHHHHHHHHHHHHHHCCCCGS- CS
    Rhomboid   62 llfsaesesplvGaSGaifgllgallvlvprnrkllr 98  
                  ++++ae+++++ GaSG ++g+++ +lv   ++r+l+ 
  KIR65889.1 5887 VAADAEGTTLVTGASGTLAGVVARHLVATGQARRLVL 5923
                  4566777779*****************9999998775 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.4     0.047        34       3      30 ..     202     227 ..     200     238 .. 0.81
   2 ?   -3.0   0.0       9.5   6.8e+03      12      31 ..    1742    1761 ..    1737    1767 .. 0.78
   3 ?    9.3   0.7    0.0014      0.97       3      31 ..    2274    2302 ..    2272    2310 .. 0.88
   4 ?    7.2   0.2    0.0064       4.6       3      39 ..    4362    4398 ..    4360    4427 .. 0.83
   5 ?   -2.4   1.6       6.3   4.5e+03      12      64 ..    5904    5955 ..    5898    5970 .. 0.65
   6 ?    9.5   0.4    0.0012      0.88       3      31 ..    6431    6459 ..    6429    6470 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.047
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEE CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvL 30 
                  + +aCs+ ++al++A ++++ g++   L
   KIR65889.1 202 IDTACSSSLVALHLAGQALRDGECT--L 227
                  678******************9554..3 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 9.5
                   HHHHHHHHHHHTTS-SEEEE CS
  ACP_syn_III   12 yalsvAdaliesgaakrvLv 31  
                    a  vA++l+++g+a+r ++
   KIR65889.1 1742 LAGVVARHLVATGQARRLVL 1761
                   45569*********999765 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0014
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEE CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLv 31  
                   + +aCs+ ++al++A+++++sg++  +L 
   KIR65889.1 2274 VDTACSSSLVALHLAAQALRSGECDMALA 2302
                   5689*******************998885 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0064
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGG CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlsk 39  
                   + +aCs+ ++al++A+++++++++  +L  g  ++s 
   KIR65889.1 4362 VDTACSSSLVALHLAAQALRQNECGLALAGGVSVMST 4398
                   5689******************999999888887775 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 6.3
                   HHHHHHHHHHHTTS-SEEEEEEEEEGGGCS-TTTHHHHTTB-EEEEEEEEEEE CS
  ACP_syn_III   12 yalsvAdaliesgaakrvLvigaetlskilDwkdrstavlfGDGAgAvvleas 64  
                    a  vA++l+++g+a+r ++ +     +  D++    a l G GA  + ++ +
   KIR65889.1 5904 LAGVVARHLVATGQARRLVLASRRLPVEGSDYA-ALVAELTGAGAQVTAVSVD 5955
                   45569********99997766555545566663.4444466666666666655 PP

  == domain 6  score: 9.5 bits;  conditional E-value: 0.0012
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEE CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLv 31  
                   + +aCs+ ++al++A+++++sg++  +L 
   KIR65889.1 6431 VDTACSSSLVALHLAAQALRSGECDLALA 6459
                   5689******************9998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (7862 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 2.23u 0.31s 00:00:02.54 Elapsed: 00:00:00.57
# Mc/sec: 41452.20
//
Query:       KIR65890.1  [L=10006]
Description: beta-ketoacyl synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
          0 1833.9  50.3    1.7e-94  316.1   0.5    9.8 12  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
          0 1131.1  44.4    2.6e-71  240.8   2.1    6.5  6  Acyl_transf_1    Acyl transferase domain
   6.1e-295  967.9  62.4    3.4e-61  206.3   2.3    8.1  7  KR               KR domain
   4.3e-273  888.0  36.6    7.6e-46  155.0   0.8    7.0  6  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   7.9e-154  511.2  30.0    9.4e-55  185.9   2.8    3.9  3  PS-DH            Polyketide synthase dehydratase
    1.4e-86  286.3   0.0    1.5e-15   57.6   0.0    6.6  6  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    3.7e-80  264.2   0.7    9.1e-12   45.2   0.0    6.9  6  PP-binding       Phosphopantetheine attachment site
    3.8e-60  202.7  33.8      3e-14   52.9   1.8    6.2  6  adh_short        short chain dehydrogenase
    7.9e-54  182.7  17.6    6.6e-08   32.2   0.1    8.1  7  Thiolase_N       Thiolase, N-terminal domain
    9.2e-41  139.9  37.5    1.6e-09   37.7   0.1    6.2  6  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    7.3e-28   96.9  58.8    5.6e-13   49.2   6.3    9.4  3  PKS_DE           Polyketide synthase dimerisation element dom
    6.2e-24   84.8  27.6    8.9e-11   41.7   0.6    6.2  6  Epimerase        NAD dependent epimerase/dehydratase family
    4.4e-22   78.9   5.6    1.3e-05   24.8   0.0    6.2  6  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    3.9e-16   59.0   3.4    0.00027   20.2   0.0    5.2  5  Polysacc_synt_2  Polysaccharide biosynthesis protein
    1.2e-12   47.2   3.6    1.2e-12   47.2   3.6    4.5  3  PikAIV_N         Narbonolide/10-deoxymethynolide synthase Pik
    1.1e-09   38.0  25.4       0.41   10.5   0.2    7.6  6  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    2.9e-07   30.5   2.1        1.7    8.3   0.0    7.3  7  SAT              Starter unit:ACP transacylase in aflatoxin b
     0.0016   18.1   0.0         27    4.5   0.0    5.8  6  Thiolase_C       Thiolase, C-terminal domain
  ------ inclusion threshold ------
      0.022   14.6   0.0         44    3.9   0.0    4.9  5  RVT_3            Reverse transcriptase-like
      0.026   14.1  35.9     0.0075   15.8   1.9    5.6  5  NmrA             NmrA-like family
      0.047   12.8  15.1        6.8    5.8   0.2    4.8  5  NAD_binding_4    Male sterility protein


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.4   2.7   1.5e-93   1.3e-90       2     253 .]      35     286 ..      34     286 .. 0.97
   2 ?   -3.8   0.0         9   7.7e+03      95     142 ..     322     369 ..     321     398 .. 0.63
   3 !  310.5   0.1     1e-95   8.8e-93       2     253 .]    1592    1840 ..    1591    1840 .. 0.97
   4 ?   -3.3   0.1       6.2   5.3e+03      95     137 ..    1876    1918 ..    1875    1946 .. 0.65
   5 !  314.6   0.3   5.9e-97   5.1e-94       2     253 .]    3364    3614 ..    3363    3614 .. 0.97
   6 ?   -1.2   0.1       1.4   1.2e+03      95     148 ..    3650    3702 ..    3648    3727 .. 0.63
   7 !  316.1   0.5     2e-97   1.7e-94       2     253 .]    5120    5370 ..    5119    5370 .. 0.97
   8 ?   -3.5   0.0       7.2   6.2e+03      95     137 ..    5406    5448 ..    5405    5477 .. 0.68
   9 !  310.1   0.3   1.4e-95   1.2e-92       2     253 .]    6877    7127 ..    6876    7127 .. 0.97
  10 ?   -1.2   0.1       1.5   1.3e+03      95     148 ..    7163    7215 ..    7161    7240 .. 0.64
  11 !  309.5   0.6   2.1e-95   1.8e-92       2     253 .]    8400    8650 ..    8399    8650 .. 0.97
  12 ?   -0.0   0.0      0.62   5.3e+02      95     133 ..    8686    8727 ..    8683    8761 .. 0.68

  Alignments for each domain:
  == domain 1  score: 303.4 bits;  conditional E-value: 1.5e-93
                    --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllle 94 
                    ep+aiv+m++r+Pgg++ ++e+w+l+ +g+dai+ +padr wd d+lydp+a   g+++t++ggfl  +++fd+ ffgisprea amdpqqrllle
     KIR65890.1  35 EPIAIVAMSCRYPGGVSsPDELWDLVAAGGDAIGGFPADRgWDLDNLYDPEAGRVGRSTTQQGGFLYeAAEFDADFFGISPREALAMDPQQRLLLE 130
                    89********************************************************************************************** PP

                    HHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt  95 aawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslr 190
                    ++wea+e+ag+ p +++g++vgvf+G++a+ y+  +    dg   +++   +g+ +++v++gri+yalgl+Gp+vtvdtACsSslva+h+a+q+lr
     KIR65890.1 131 TSWEAFESAGIAPSSVRGQKVGVFVGTAANGYGVGQDGGADG-ADEGYL-LTGT-ATSVVSGRIAYALGLEGPAVTVDTACSSSLVALHLACQALR 223
                    ********************************7655555555.678888.9999.***************************************** PP

                    TTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    sge d+alaGGv+++ tp+a++gfs+++ l++dgrck+f+++adG+ ++EGvG+++++rl+da
     KIR65890.1 224 SGEFDLALAGGVTVMATPSAFVGFSRQRGLASDGRCKSFAAAADGTGWAEGVGLLLVERLSDA 286
                    *************************************************************98 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 9
                    HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTTGGGSC CS
  ketoacyl-synt  95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgsevkas 142
                    + ++al +a l p+++d  +   +g ++G  ++ +a la+   +g++++++
     KIR65890.1 322 VIRQALSNARLAPADVDAVEahgTGTTLGDPIEAQALLAT---YGRDRDGH 369
                    5689**********99777766799999988886643333...33333333 PP

  == domain 3  score: 310.5 bits;  conditional E-value: 1e-95
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     ep+aivGm++r+Pgg++ ++ +w+l+ +grd+i+e+  dr wd d+l + +++a+g+++t++ggfld + dfdp ffgisprea amdpqqrll
     KIR65890.1 1592 EPIAIVGMSCRYPGGVSdPDGLWDLVASGRDGITEFAPDRhWDLDRLLAADPDAPGRSYTRHGGFLDgATDFDPVFFGISPREALAMDPQQRLL 1685
                     89**************99****************9988988***************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     lea+wea+e+ag+tp++l+g+ +gvf+G++ + y++    de+  + ++++  +g  +++vi+gr+sy++gl+Gp+vtvdtACsSslva+h+av
     KIR65890.1 1686 LEATWEAFEQAGVTPDSLHGTPTGVFVGASPSGYGT---GDETP-DLDGYR-LTGG-AHSVISGRVSYTFGLEGPAVTVDTACSSSLVALHLAV 1773
                     ********************************9965...34344.578999.9999.9************************************ PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     qslr+ge+d+a+aGGv++++tp+a++ f ++g l++dgrc++f+++adG+ +GEGvG+++++rl+da
     KIR65890.1 1774 QSLRQGECDLAVAGGVTVMVTPGAFVEFTRQGGLAADGRCRSFAAAADGTGWGEGVGVLLVERLSDA 1840
                     *****************************************************************98 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 6.2
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTT CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgs 137 
                     + ++al++aglt +++d  +   ++ ++G  ++ +a la+   +g+
     KIR65890.1 1876 VIRQALANAGLTTADVDAVEahgTATTLGDPIEAQALLAT---YGQ 1918
                     5789*********999777665688888877775533333...332 PP

  == domain 5  score: 314.6 bits;  conditional E-value: 5.9e-97
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     ep+aivGm++r+Pgg+  ++++w lL +g+d+ise+padr wd + l++p+++ +g++++++ggfl+ +++fdp+ffgisprea amdpqqrll
     KIR65890.1 3364 EPIAIVGMACRYPGGVAsPDDLWALLADGGDGISEFPADRgWDLESLFHPDPDHPGTSYARHGGFLAgAAEFDPAFFGISPREAIAMDPQQRLL 3457
                     89**************99**************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     lea+we++e+ag++p++++gsr+gvf+G++++dya +++  ++g   +++   +g+ + +v++gr++y++gl+Gp+vtvdtACsSslva+h+a 
     KIR65890.1 3458 LEASWETFESAGVDPARVRGSRTGVFAGLMYHDYASQVQELPEG--LEGYI-GTGN-SGSVVSGRVAYTFGLEGPAVTVDTACSSSLVALHLAA 3547
                     **********************************6655555455..899*9.****.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     q+lrsge+d+alaGGv+++ tp++++ fs+++ ls+dgrck+f+++adG+ ++EGvG+++++rl+da
     KIR65890.1 3548 QALRSGECDLALAGGVTVMATPGTFVEFSRQRGLSADGRCKSFAASADGTGWSEGVGMLLVQRLSDA 3614
                     *****************************************************************98 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 1.4
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHH CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgsevkaspkavga 148 
                     + ++al++a ltp+++d  +   +g ++G  ++ +a   +l  +g+  +a p  +g+
     KIR65890.1 3650 VIRQALANARLTPADVDAVEahgTGTTLGDPIEAQA---LLATYGQ-DRATPLLLGS 3702
                     6789************77776679999998888664...3444443.3333333333 PP

  == domain 7  score: 316.1 bits;  conditional E-value: 2e-97
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     ep+aivGm++r+Pgg+  ++++w lL +g+d+ise+padr wd d+l+dp+++  g+++t++ggfl+ ++dfdp+ffgisprea amdpqqrll
     KIR65890.1 5120 EPIAIVGMACRYPGGVAsPDDLWALLADGGDGISEFPADRgWDLDTLFDPDPDRSGTSYTRHGGFLAgAADFDPAFFGISPREAIAMDPQQRLL 5213
                     89**************99**************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHH.HHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdy.aalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaa 185 
                     lea+we++e+ag++p+ ++gsr+gvf+Gv+++dy + la l +d    ++++  +g+ + +v++gr++y++gl+Gp+vtvdtACsSslva+h+a
     KIR65890.1 5214 LEASWETFESAGVDPAGVRGSRTGVFAGVMYHDYaSRLADLPPD---TEGYV-GTGT-SGSVLSGRVAYTFGLEGPAVTVDTACSSSLVALHLA 5302
                     **********************************4444444444...58999.9999.************************************ PP

                     HHHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  186 vqslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                      q+lrsge+d+alaGGv+++ tp++++ fs+++ ls+dgrck+f+++adG+ ++EGvG+++++rl+da
     KIR65890.1 5303 AQALRSGECDLALAGGVTVMATPGTFVEFSRQRGLSADGRCKSFAASADGTGWSEGVGMLLVQRLSDA 5370
                     ******************************************************************98 PP

  == domain 8  score: -3.5 bits;  conditional E-value: 7.2
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTT CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgs 137 
                     + ++al++a l p+++d  +   +g ++G  ++ +a la++   g+
     KIR65890.1 5406 VIRQALANARLAPADVDAVEahgTGTTLGDPIEAQALLATY---GQ 5448
                     5689***********97777667999999888866433333...33 PP

  == domain 9  score: 310.1 bits;  conditional E-value: 1.4e-95
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     ep+aivGm++r+Pgg+  ++++w lL  g+d+ise+padr wd   l+dp+++  g+++t+ ggfl  +++fdp ffgisprea amdpqqrll
     KIR65890.1 6877 EPIAIVGMACRYPGGVAsPDDLWALLAVGGDGISEFPADRgWDLASLFDPDPNNSGTSYTRNGGFLYgAAEFDPGFFGISPREALAMDPQQRLL 6970
                     89**************99**************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     lea+we++e+ag++p +l+gsr+gvf+Gv+++d+a+ +++d +  ev++++  +g+ + +v++gr++y++gl+Gp+vtvdtACsSslva+h+a 
     KIR65890.1 6971 LEASWETFESAGVDPVRLRGSRTGVFAGVMYHDWAT-RLMDLPA-EVEGYV-GTGT-SGSVLSGRVAYTFGLEGPAVTVDTACSSSLVALHLAA 7060
                     **********************************65.5555555.59****.9999.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     q+lrsge+d+alaGGv+++ tp++++ fs+++ ls+dgrck+f+++adG+ ++EGvG+++++rl+da
     KIR65890.1 7061 QALRSGECDLALAGGVTVMATPGTFIEFSRQRGLSQDGRCKSFAAAADGTGWSEGVGMLLVERLSDA 7127
                     *****************************************************************98 PP

  == domain 10  score: -1.2 bits;  conditional E-value: 1.5
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHH CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgsevkaspkavga 148 
                     + ++al++a ltp+++d  +   +g ++G  ++ +a   +l  +g+  +a p  +g+
     KIR65890.1 7163 VIRQALANARLTPADVDAVEahgTGTTLGDPIEAQA---LLATYGQ-DRATPLLLGS 7215
                     6789************77776679999998888654...4444443.3344433333 PP

  == domain 11  score: 309.5 bits;  conditional E-value: 2.1e-95
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     ep+aiv m++rfPgg++ ++e+welLl+g+dai+++p+dr wd  +l+d++++  g+++++ ggfld v+dfd++ffgi+prea amdpqqrll
     KIR65890.1 8400 EPIAIVSMACRFPGGVSsPQELWELLLDGGDAIGPMPTDRgWDLAALFDSDPDRVGTSYARSGGFLDgVADFDAAFFGINPREALAMDPQQRLL 8493
                     89******************************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     l ++we++e+ag++p++++gs++gvf+G++ +dya+  +l  + sev+++  a+g+  a+v++gr++y++gl+Gp+vtvdtACsSslva+h+a 
     KIR65890.1 8494 LHTTWETFERAGIDPHRVRGSATGVFMGTNGQDYAT-LLLG-ARSEVEGYQ-ATGN-GASVVSGRLAYSFGLHGPAVTVDTACSSSLVALHLAA 8583
                     **********************************65.4444.44469****.****.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     q+lrsge+d+alaGGv+++ tp+a+  fs+++ l++dgr+kaf ++adG+ +GEGvG+++L+rl+da
     KIR65890.1 8584 QALRSGECDLALAGGVTVMSTPGAFLEFSRQRGLAADGRVKAFGADADGTGWGEGVGVLLLQRLSDA 8650
                     *****************************************************************98 PP

  == domain 12  score: -0.0 bits;  conditional E-value: 0.62
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHH CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaald 133 
                     + ++al++agltp+++d  +   +g ++G  ++ +a +aa+ 
     KIR65890.1 8686 VIRQALANAGLTPADVDAIEahgTGTTLGDPIEAQALTAAYG 8727
                     6789***********955555559999998888664333333 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.8   2.1     3e-74   2.6e-71       1     317 [.     572     885 ..     572     887 .. 0.98
   2 !  192.9   2.3   1.1e-59   9.6e-57       3     317 ..    2150    2466 ..    2148    2468 .. 0.95
   3 !  185.6   1.2   1.8e-57   1.6e-54       3     317 ..    3907    4224 ..    3906    4226 .. 0.95
   4 !  182.3   1.3   1.9e-56   1.6e-53       3     317 ..    5653    5970 ..    5651    5972 .. 0.95
   5 !  183.8   1.3   6.7e-57   5.8e-54       3     317 ..    7408    7725 ..    7407    7727 .. 0.95
   6 !  172.6   0.7   1.7e-53   1.5e-50       3     279 ..    8966    9249 ..    8965    9280 .. 0.93

  Alignments for each domain:
  == domain 1  score: 240.8 bits;  conditional E-value: 3e-74
                    EEEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHHHH CS
  Acyl_transf_1   1 vfvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpeglldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGElA 96 
                    v+vf+GqG+Q   M++ L+ t ++f +++a++   f    +  +  vl+ ++e+ l+++++vqpaL+av ++la +++ +G++p avvGHS+GE+ 
     KIR65890.1 572 VWVFPGQGAQYVSMAAGLIGTCPVFDEALAECQAEFDRWLDVDLVAVLTGADESWLTRTEVVQPALFAVGVGLARVWRHAGLTPRAVVGHSQGEIV 667
                    7*********************************************************************************************** PP

                    HHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS.HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECCCEECTT CS
  Acyl_transf_1  97 aavvagalsseeallavvlrsrlmmqlagpgdmaavelaeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalvenvnvavhs 192
                    aa+vagals+++a++ ++lr r  + +ag g+m av l + e + r +d ++++v+n+p  +v+sg+++a+++l +  ++egv+a+ +++++a+hs
     KIR65890.1 668 AAHVAGALSLADAVKILALRARALAGIAGTGAMVAVDLPAAEVAGRLPDGLSVSVVNGPTATVVSGPPQAVADLAAAYAAEGVRARIIDIDYASHS 763
                    **************************************999******************************************************* PP

                    CCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCHHGGG-TCC CS
  Acyl_transf_1 193 pqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlksaedvksa 288
                    p+v+++ad ++++la ++p  + v   s+++    +   l+a+yw++nlr pv+f+ av+ a++ ++  fve+spH++l + l   l+  + + + 
     KIR65890.1 764 PAVQPVADRMRADLAGVVPGDADVRILSTVTGTWIDGAALDADYWAENLRRPVLFDTAVRTAVDAGHTDFVEVSPHPVLSMSLTAILD--DTGTTG 857
                    ****************************************************************************************..799999 PP

                    CCCCTEETTSS-HHHCHHHHHHHHHHCT- CS
  Acyl_transf_1 289 tlvGklkrdltdflvtflyllakahltgs 317
                    + + +l+r+ ++ + ++l++la ah  g 
     KIR65890.1 858 RALATLRRGEDA-AARLLTSLAAAHAHGL 885
                    99999*******.999****999998886 PP

  == domain 2  score: 192.9 bits;  conditional E-value: 1.1e-59
                     EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TT CS
  Acyl_transf_1    3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSl 92  
                     +fsGqG+Q aGMG+eL ++ ++fa ++++   ++ +     + +vl +++      lld+++f+q +L+av++al+ l +s+Gv p+ v GHS+
     KIR65890.1 2150 LFSGQGAQRAGMGRELAESFPVFASALNEVCGHLDPLLPQPLKEVLFAAEGsadaALLDQTVFTQAGLFAVEVALFRLVESFGVVPDFVGGHSV 2243
                     7**********************************************999888889************************************** PP

                     HHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEE CS
  Acyl_transf_1   93 GElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalve 184 
                     GE+ aa+vag ls+++a   v+ r+rlm+ l   g+m+av+   a + e ++   dv  a++n+p +vv+sg  eal+e+ + ++ +gv+ ++ 
     KIR65890.1 2244 GEITAAHVAGVLSLADACQLVAARGRLMQALPAGGGMLAVNAaeADVIESIAGRADVGIAAVNGPTSVVVSGAVEALDEVEQTWQGRGVRTRRL 2337
                     ****************************************997677778888****************************************** PP

                     CCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCH.HHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCC CS
  Acyl_transf_1  185 nvnvavhspqvdaiadalasaladiaprkpkvakisstsldesserel.saeywvanlrspvrfaeavlsaaetiplvfveispHslllaalek 277 
                     +v+ a+hsp ++++  + +++l +++   p v+  s ++   +++  l  a+ywv+ +r++vrfa+ v+++++ + ++fvei p ++l+a +++
     KIR65890.1 2338 AVSHAFHSPLMEPMLAEFQATLETLTFAAPLVPVVSNLTGALADADDLrTADYWVRHVREAVRFADGVAALRAAGADTFVEIGPGAVLTALVRE 2431
                     *****************************************99888773699****************************************** PP

                     CCHHGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT- CS
  Acyl_transf_1  278 tlksaedvksatlvGklkrdltdflvtflyllakahltgs 317 
                     tl     + +   v+  +rd  +  +++l++la++  +gs
     KIR65890.1 2432 TLT----GDELLAVPAQRRDRAE-PRALLAALAELYAAGS 2466
                     **9....7888889988888888.8888888888777776 PP

  == domain 3  score: 185.6 bits;  conditional E-value: 1.8e-57
                     EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TT CS
  Acyl_transf_1    3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSl 92  
                     +fsGqG+Q aGMG+eL +  ++fa ++++   ++ ++    +  vl + +     glld+++f+q +L+av++al+ l +s+Gv p+ v GHS+
     KIR65890.1 3907 LFSGQGAQRAGMGRELSAAFPVFASALDEVCGHLDPVLPQPLRPVLFADEGsaeaGLLDQTVFTQAGLFAVEVALFRLVESFGVVPDFVGGHSV 4000
                     6*********************************************998888888*************************************** PP

                     HHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEE CS
  Acyl_transf_1   93 GElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalve 184 
                     GE+ aa+vag ls+++a   v+ r+rlm+ l   g+m+av+   a + e ++   dv  a++n+p+ vv+sg  eal+e+ + ++ +gv+ ++ 
     KIR65890.1 4001 GEITAAHVAGVLSLADACALVAARGRLMQALPAGGGMLAVNAaeADVIESIAGRADVGIAAVNGPSAVVVSGAVEALDEVEQLWQGRGVRTRRL 4094
                     ****************************************997677778888****************************************** PP

                     CCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCH.HHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCC CS
  Acyl_transf_1  185 nvnvavhspqvdaiadalasaladiaprkpkvakisstsldesserel.saeywvanlrspvrfaeavlsaaetiplvfveispHslllaalek 277 
                     +v+ a+hsp ++++  + ++ l  +  r+p v+  s ++   ++++el  a+ywv+ +r++vrfa+ v+++++ +  +f+e+ p s+l+a   +
     KIR65890.1 4095 AVSHAFHSPLMEPMLAEFRAVLDGLSFRTPLVPVVSNLTGALAEPQELtRADYWVRHVREAVRFADGVAALRAAGVGTFLEVGPQSVLTALAAD 4188
                     ***********************9*******************988873699****************************************** PP

                     CCHHGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT- CS
  Acyl_transf_1  278 tlksaedvksatlvGklkrdltdflvtflyllakahltgs 317 
                      l    d  + t++   +rd  + ++++l++l+++h+ g+
     KIR65890.1 4189 VLP--GDEGVLTVAA-QRRDRPA-ARALLAALGELHVHGV 4224
                     999..5666777776.8999999.9999999999999987 PP

  == domain 4  score: 182.3 bits;  conditional E-value: 1.9e-56
                     EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TT CS
  Acyl_transf_1    3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSl 92  
                     +fsGqG+Q aGMG+eL++  ++fa ++++   ++ +     +  vl + +      lld++ f+q +L+av++al+ l +s+Gv p+ v GHS+
     KIR65890.1 5653 LFSGQGAQRAGMGRELYAAFPVFASALDEVCGHLDPLLPQPLRPVLFADEGsadaALLDQTMFTQAGLFAVEVALVRLVESFGVVPDFVGGHSV 5746
                     7*********************************************9988878889************************************** PP

                     HHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEE CS
  Acyl_transf_1   93 GElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalve 184 
                     GE+ aa+vag ls+++a   v+ r+rlm+ l   g+m+av+   a + e +    dv  a++n+p+ vv+sg  eal+el + ++ +gv+ ++ 
     KIR65890.1 5747 GEITAAHVAGVLSLADACALVAARGRLMQALPAGGGMLAVNAaeADVAESITGRADVGIAAVNGPSAVVVSGAVEALDELEQTWRDRGVRTRRL 5840
                     ****************************************997777788888****************************************** PP

                     CCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHH.HHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCC CS
  Acyl_transf_1  185 nvnvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsa.eywvanlrspvrfaeavlsaaetiplvfveispHslllaalek 277 
                     +v+ a+hsp ++++  + ++ l +++   p ++  s ++   ++   l   +ywv+ +r++vrfa+ v+++++ +  +f+e+ p s+l+a   +
     KIR65890.1 5841 TVSHAFHSPLMEPMLAEFRAVLETLTFAAPLLPVVSNLTGALATGDDLRTvDYWVRHVREAVRFADGVAALRAAGVGTFLEVGPQSVLTAMAAD 5934
                     ************************9999***********9999888876438****************************************** PP

                     CCHHGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT- CS
  Acyl_transf_1  278 tlksaedvksatlvGklkrdltdflvtflyllakahltgs 317 
                      l    d  + t++   +rd  + + ++l++la++h+ g+
     KIR65890.1 5935 VLP--GDEGVLTVAA-QRRDRPE-ATALLAALAELHVNGV 5970
                     999..5666777776.7999999.9999999999999987 PP

  == domain 5  score: 183.8 bits;  conditional E-value: 6.7e-57
                     EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TT CS
  Acyl_transf_1    3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSl 92  
                     +fsGqG+Q aGMG+eL +  ++fa ++++   ++ +     +  vl +++     glld+++f+q +L+av++al+ l +s+Gv p+ v GHS+
     KIR65890.1 7408 LFSGQGAQRAGMGRELSAAFPVFASALDEVCGHLDPLLPQPLKGVLFAAEGsadaGLLDQTVFTQAGLFAVEVALFRLVESFGVVPDFVGGHSV 7501
                     6**********************************************99988888*************************************** PP

                     HHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEE CS
  Acyl_transf_1   93 GElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalve 184 
                     GE+ aa+vag ls+++a   v+ r+rlm+ l   g+m+av+   +++ e ++   dv  a++n+p+ vv+sg  eal+el + ++ +gv+ ++ 
     KIR65890.1 7502 GEITAAHVAGVLSLADACQLVAARGRLMQALPAGGGMLAVAApeEAVAESIAGRADVGIAAVNGPSAVVVSGAVEALDELEQVWRDRGVRTRRL 7595
                     ******************************************8777888888****************************************** PP

                     CCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCH.HHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCC CS
  Acyl_transf_1  185 nvnvavhspqvdaiadalasaladiaprkpkvakisstsldesserel.saeywvanlrspvrfaeavlsaaetiplvfveispHslllaalek 277 
                     +v+ a+hsp ++++  + ++ l  +    p v+  s ++   ++++e+  a+ywv+ +r++vrfa+ v+++++ +  +f+e+ p s+l+a   +
     KIR65890.1 7596 TVSHAFHSPLMEPMLAEFRAVLDGLDFAAPLVPVVSNLTGALADAEEIrTADYWVRHVREAVRFADGVAALRAAGVGTFLEVGPQSVLTALAAD 7689
                     *******************999999999********999999977776379******************************************* PP

                     CCHHGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT- CS
  Acyl_transf_1  278 tlksaedvksatlvGklkrdltdflvtflyllakahltgs 317 
                      l    d  + t++   +rd  + + ++l++la++h+ g+
     KIR65890.1 7690 VLP--GDEGVLTVAA-QRRDWPE-ATALLTALAELHVNGV 7725
                     999..5666777776.8999999.9999999999999987 PP

  == domain 6  score: 172.6 bits;  conditional E-value: 1.7e-53
                     EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TT CS
  Acyl_transf_1    3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSl 92  
                     +fsGqG+Q aGMG+eL++  ++faa++++   ++ +     +  vl +        lld+++f+q +L+av++al+ l +s+Gv p+ v GHS+
     KIR65890.1 8966 LFSGQGAQRAGMGRELYAAFPVFAAALDEVCAHLDPLLPQPLRPVLFADAGsteaDLLDQTVFTQAGLFAVEVALFRLVESFGVVPDFVGGHSV 9059
                     6*********************************************87655555589************************************* PP

                     HHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEE CS
  Acyl_transf_1   93 GElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalve 184 
                     GE+ aa+vag ls+++a   v+ r+rlm+ l   g+m+av+   a +   ++   dv  a++n+p +vv+sg  +al+e+ + ++ +gv+ ++ 
     KIR65890.1 9060 GEITAAHVAGVLSLADACALVAARGRLMQALPAGGGMLAVNAaeADVFASIAGRADVGIAAVNGPTSVVVSGAVGALDEIERAWRDRGVRTRRL 9153
                     *****************************************965555566669***************************************** PP

                     CCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCH.HHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCC CS
  Acyl_transf_1  185 nvnvavhspqvdaiadalasaladiaprkpkvakisstsldesserel.saeywvanlrspvrfaeavlsaaetiplvfveispHslllaalek 277 
                     +v+ a+hsp ++++  + ++ l +++   p v+  s ++   ++   l  a+ywv+ +r++vr a+ +++++  + ++ +ei p ++l+a   +
     KIR65890.1 9154 TVSHAFHSPLMEPMLAEFRAVLETLTFAAPLVPVVSNLTGALADGDDLrTADYWVRHVREAVRYADGIAALRGAGVDTYLEIGPAAVLTAMNAE 9247
                     **************************9**************99888773699************************************997766 PP

                     CC CS
  Acyl_transf_1  278 tl 279 
                      l
     KIR65890.1 9248 LL 9249
                     55 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.5   7.2   5.6e-59   4.8e-56       1     180 []    1213    1391 ..    1213    1391 .. 0.98
   2 !  206.3   2.3     4e-64   3.4e-61       1     179 [.    2989    3168 ..    2989    3169 .. 0.99
   3 !  200.9   3.7   1.8e-62   1.5e-59       1     179 [.    4745    4924 ..    4745    4925 .. 0.98
   4 !  202.6   2.6   5.3e-63   4.5e-60       1     179 [.    6500    6679 ..    6500    6680 .. 0.98
   5 !  156.9   5.5   5.6e-49   4.7e-46       1     179 [.    8030    8202 ..    8030    8203 .. 0.96
   6 ?    4.7   2.0     0.029        25       1      27 [.    9592    9618 ..    9592    9621 .. 0.93
   7 !   35.0   0.0   1.5e-11   1.3e-08      68     180 .]    9629    9741 ..    9618    9741 .. 0.93

  Alignments for each domain:
  == domain 1  score: 189.5 bits;  conditional E-value: 5.6e-59
                  SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------T CS
          KR    1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkll 97  
                  gt l+tGG+G++G + arwla++ga+hlvl+sR++ a + +++l +el+a+g++v+v+a+D +d+++v+al++ ++ + +p++ v+haAg+++ ++l
  KIR65890.1 1213 GTILVTGGTGAIGAQAARWLAANGAEHLVLTSRRGLAAAGAAELADELTATGVRVTVAACDMADREQVAALVAGLD-DVAPLTAVLHAAGITQLTAL 1308
                  899********************************999*************************************8.667***************** PP

                  TT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BTT CS
          KR   98 eemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwae 180 
                   +++ + l++v+a Kv+Ga +L+ell d++ld fv+f+Si+g++gs gq++YaaaNa+lDalae+rr++gl+a+s+ wg+wae
  KIR65890.1 1309 VDTDLDVLDHVMAGKVAGAVHLDELLGDRPLDAFVTFASISGVWGSGGQGAYAAANAYLDALAEQRRARGLAATSVSWGAWAE 1391
                  *********************************************************************************86 PP

  == domain 2  score: 206.3 bits;  conditional E-value: 4e-64
                  SEEEEETTTSHHHHHHHHHHH.HHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR    1 gtylitGGlGgLGlelarwla.ekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96  
                  gt+l+tGG+G+LG  lar+l+ ++g  +l+l+sR+++a + +++l ael+ lga+v+v+a+Dv+d+dav+al+ +++a++++++Gv+h+Agvl+d+ 
  KIR65890.1 2989 GTVLVTGGTGALGALLARHLVtDRGVDSLALVSRRGPAADGAADLAAELTGLGARVDVLACDVTDPDAVRALVGRLTADGGRLAGVVHTAGVLDDAV 3085
                  89******************95699************************************************************************ PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  ++  +a++l++vlapKv++aw+Lhe+++  +ld+fv+fSSiag+lgs+gq++YaaaN+flDala++rr++gl a s++wg+w+
  KIR65890.1 3086 VTGIDADRLARVLAPKVDAAWHLHEATAGLDLDLFVMFSSIAGVLGSPGQGAYAAANHFLDALAAHRRARGLTAHSLAWGMWD 3168
                  **********************************************************************************6 PP

  == domain 3  score: 200.9 bits;  conditional E-value: 1.8e-62
                  SEEEEETTTSHHHHHHHHHHHH.HHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR    1 gtylitGGlGgLGlelarwlae.kgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96  
                  g++l+tGG+G+LG  +a++l++ +g r+lvl+sR+++a + ++a +++l+ lga+vev a+Dv+d++av+al+ +++a++++++Gv+h+Agvl+d+ 
  KIR65890.1 4745 GAVLLTGGTGALGALVAEHLVSaHGVRSLVLVSRRGRAAAGADAVVERLAGLGASVEVSACDVTDAEAVRALVGRLTADGGRLAGVVHTAGVLDDAV 4841
                  789*****************96488************************************************************************ PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  ++  +a++l++vlapKv++aw+Lhe+++  +ld+fv+fSSiag+lgs+gq++Yaa+NaflD+la+ rr+ glpavs++wg+w+
  KIR65890.1 4842 VTGIDADRLARVLAPKVDAAWHLHEATAGLDLDLFVVFSSIAGVLGSPGQGAYAAGNAFLDGLAAFRRRAGLPAVSLAWGMWD 4924
                  **********************************************************************************6 PP

  == domain 4  score: 202.6 bits;  conditional E-value: 5.3e-63
                  SEEEEETTTSHHHHHHHHHHHH.HHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR    1 gtylitGGlGgLGlelarwlae.kgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96  
                  g++l+tGG+G+LG  +a++l++ +g r+lvl+sR++aa + +++l+ +l+ lga+vev+a+Dv+d++av++l+ +++a++++++Gv+h+Agvl+d+l
  KIR65890.1 6500 GAVLVTGGTGALGALVAEHLVSvHGVRSLVLVSRRGAAADGADELTGRLSGLGASVEVAACDVTDAEAVQSLVGRLTADGRRLAGVVHTAGVLDDGL 6596
                  789******************8699************9*********************************************************** PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  +e +t e+l++vlapKv++aw+Lhe+++  +ld+fv+fSSiag+lgs+gq++Yaa+NaflD+la+ rr+ glpavs++wg+w+
  KIR65890.1 6597 VEGLTGERLAAVLAPKVDAAWHLHEATAGLDLDLFVVFSSIAGVLGSPGQGAYAAGNAFLDGLAAFRRRAGLPAVSLAWGMWD 6679
                  **********************************************************************************6 PP

  == domain 5  score: 156.9 bits;  conditional E-value: 5.6e-49
                  SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------.--- CS
          KR    1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr.dkl 96  
                  gt+l+tGG+G+LG+++arwl+++ga+++vl sR++a  + +++li+el+     v+vva+Dv+d++av al++ +    p+++ v+h+Ag++  + +
  KIR65890.1 8030 GTVLVTGGTGALGRHTARWLLANGAAEVVLASRRGADAPGAAELIEELAG---AVRVVACDVTDAAAVDALVAGL----PALTAVVHTAGASGgTVP 8119
                  89********************************9999999999998887...8*******************99....69*********9985778 PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                    e ta+dl + la Kv Ga +L+ ++++++ld fv+fSS+ag++g  gqa Yaa+Na lDal++ rr++glpa++++ g+wa
  KIR65890.1 8120 AHEATAADLSATLAGKVLGALHLDAACRSRDLDAFVVFSSVAGVWGGGGQAGYAAGNALLDALVAARRAEGLPATALAYGPWA 8202
                  999*******************************************************************************7 PP

  == domain 6  score: 4.7 bits;  conditional E-value: 0.029
                  SEEEEETTTSHHHHHHHHHHHHHHS-E CS
          KR    1 gtylitGGlGgLGlelarwlaekgarh 27  
                  gt+l+tGG+G ++ + + wl ++ga+ 
  KIR65890.1 9592 GTVLVTGGAGTVAGHATAWLGRQGAAV 9618
                  89**********************975 PP

  == domain 7  score: 35.0 bits;  conditional E-value: 1.5e-11
                  HHHHHHHHHHHSS---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHH CS
          KR   68 vealleeikaeeppikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrr 164 
                  ++  +e++ a+++p++  +h    + + +l+e+t + l++ l + v  +      le   l  +vl+SS +g++gs g++  aa+ a l  lae rr
  KIR65890.1 9629 LTDRMEQLAADGRPVTALLHVPADTGTVPLAELTLAGLAADLVATVGDIPRYADELEGAALGALVLCSSTSGVWGSGGRSGQAAGDALLQVLAENRR 9725
                  5566788999999999999999999999********9999999999999999999999*************************************** PP

                  HHHHTEEEEEE--BTT CS
          KR  165 sqglpavsinwglwae 180 
                  + glp+ s+++g+wa+
  KIR65890.1 9726 RAGLPVASVAFGPWAD 9741
                  **************86 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2   0.3   2.7e-47   2.3e-44       1     117 [.     294     411 ..     294     412 .. 0.99
   2 !  148.0   1.0   1.3e-46   1.1e-43       1     117 [.    1848    1965 ..    1848    1966 .. 0.99
   3 !  149.7   1.3   3.9e-47   3.3e-44       1     117 [.    3622    3737 ..    3622    3738 .. 0.98
   4 !  153.8   0.5     2e-48   1.7e-45       1     117 [.    5378    5495 ..    5378    5496 .. 0.99
   5 !  154.0   1.1   1.8e-48   1.5e-45       1     117 [.    7135    7250 ..    7135    7251 .. 0.98
   6 !  155.0   0.8     9e-49   7.6e-46       1     117 [.    8658    8775 ..    8658    8776 .. 0.99

  Alignments for each domain:
  == domain 1  score: 150.2 bits;  conditional E-value: 2.7e-47
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-GGG CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHleaA 93 
                      +av++gsa+n+dga+n+ltapng aq+r+i++al++a+++p+dvd veahgtgt+lgDpiE++al +++g++++ ++pl++gS+KsniGH+++A
       KIR65890.1 294 LAVVRGSAINQDGASNGLTAPNGPAQQRVIRQALSNARLAPADVDAVEAHGTGTTLGDPIEAQALLATYGRDRDgHDPLWLGSIKSNIGHSQSA 387
                      69*************************************************************************99***************** PP

                      HHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  94 aGvaelikvvlalkhgvipptlnl 117
                      aG+a++ik+v+a++hg +p+tl++
       KIR65890.1 388 AGIAGIIKMVMAMRHGLLPATLHV 411
                      ***********************8 PP

  == domain 2  score: 148.0 bits;  conditional E-value: 1.3e-46
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       +a+++gsavn+dga+n+ltapng +q+r+i++ala+ag++ +dvd veahgt+t+lgDpiE++al +++g+++  +qpl++gS+KsniGH++
       KIR65890.1 1848 LAIVRGSAVNQDGASNGLTAPNGPSQQRVIRQALANAGLTTADVDAVEAHGTATTLGDPIEAQALLATYGQDRPaDQPLWLGSIKSNIGHTQ 1939
                       699*********************************************************************99****************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaGva++ik+v+al+hg++p+tl++
       KIR65890.1 1940 AAAGVAGVIKMVQALRHGTLPATLHI 1965
                       *************************8 PP

  == domain 3  score: 149.7 bits;  conditional E-value: 3.9e-47
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GG CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHlea 92  
                       +av++g+avn+dga+n+ltapng +q+r+i++ala+a+++p+dvd veahgtgt+lgDpiE++al +++g+++   pl +gS+KsniGH++a
       KIR65890.1 3622 LAVVRGTAVNQDGASNGLTAPNGPSQQRVIRQALANARLTPADVDAVEAHGTGTTLGDPIEAQALLATYGQDR-ATPLLLGSIKSNIGHTQA 3712
                       69*********************************************************************99.77**************** PP

                       GHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   93 AaGvaelikvvlalkhgvipptlnl 117 
                       AaG+a++ik+++a++hgv+p tl++
       KIR65890.1 3713 AAGAAGIIKMIMAMRHGVVPRTLHV 3737
                       ************************8 PP

  == domain 4  score: 153.8 bits;  conditional E-value: 2e-48
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       +av++g+avn+dga+n+ltapng +q+r+i++ala+a+++p+dvd veahgtgt+lgDpiE++al +++g+++  ++pl++gSvKsniGH++
       KIR65890.1 5378 LAVVRGTAVNQDGASNGLTAPNGPSQQRVIRQALANARLAPADVDAVEAHGTGTTLGDPIEAQALLATYGQDRPvDRPLWLGSVKSNIGHTQ 5469
                       69***********************************************************************9****************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaGva++ik+++a++hgv+p++l++
       KIR65890.1 5470 AAAGVAGVIKMIMAMRHGVVPASLHV 5495
                       *************************8 PP

  == domain 5  score: 154.0 bits;  conditional E-value: 1.8e-48
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GG CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHlea 92  
                       +av++g+avn+dga+n+ltapng +q+r+i++ala+a+++p+dvd veahgtgt+lgDpiE++al +++g+++   pl +gS+KsniGH++a
       KIR65890.1 7135 LAVVRGTAVNQDGASNGLTAPNGPSQQRVIRQALANARLTPADVDAVEAHGTGTTLGDPIEAQALLATYGQDR-ATPLLLGSIKSNIGHTQA 7225
                       69*********************************************************************99.77**************** PP

                       GHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   93 AaGvaelikvvlalkhgvipptlnl 117 
                       AaGva++ik+v+a++hgv+pptl++
       KIR65890.1 7226 AAGVAGVIKMVMAMRHGVVPPTLHV 7250
                       ************************8 PP

  == domain 6  score: 155.0 bits;  conditional E-value: 9e-49
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       +av++gsavn+dga+n+ltapng aq+r+i++ala+ag++p+dvd +eahgtgt+lgDpiE++al++++g ++  ++pl++gSvKsniGH++
       KIR65890.1 8658 LAVVAGSAVNQDGASNGLTAPNGPAQQRVIRQALANAGLTPADVDAIEAHGTGTTLGDPIEAQALTAAYGPDRPaDRPLWLGSVKSNIGHTQ 8749
                       69**********************************************************************99*9**************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaG+a+lik+vlal+hg++p+tl+ 
       KIR65890.1 8750 AAAGAASLIKMVLALRHGTLPATLHA 8775
                       ************************96 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.1   6.9     4e-50   3.4e-47       1     294 [.    2515    2786 ..    2515    2790 .. 0.89
   2 !  175.2   4.6   2.1e-54   1.8e-51       1     292 [.    4274    4539 ..    4274    4544 .. 0.90
   3 !  185.9   2.8   1.1e-57   9.4e-55       1     292 [.    6020    6284 ..    6020    6289 .. 0.91

  Alignments for each domain:
  == domain 1  score: 161.1 bits;  conditional E-value: 4e-50
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hpll + vr a  +  v   rl++a +pwL+DH+v g vv+Pg++ +e+al A+ +      ++++ +++i ++lvlp +++v+vq+++ p++    
  KIR65890.1 2515 HPLLAAAVRLAGEDAAVLTGRLSVAAQPWLADHVVAGAVVVPGTALVELALRAGDEFG----PCRVGELTIATPLVLPAQGAVRVQVRVGPRDGLGG 2607
                  9********************************************************9....9*****************************77666 PP

                  ....EEEEEEE-SS-TT...EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEE.TTEEEEEE-- CS
       PS-DH   98 rawvefeifSregggee..wtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrg.dgealaelrl 191 
                      +++++S+ +++ +  w++ha+G +++ e +a  ++ l a+++++a +     ++ a +Y++la  g++yGp Fqglr++w+  d+ ++ae++l
  KIR65890.1 2608 ---RAVTVHSQPDHDPDgdWVRHAEGLLTAVEPTA--DAGLGAWPPAAAVE-----ADLAGWYDALAGHGMTYGPVFQGLRRAWTAgDDTVYAEVTL 2694
                  ...69**********99************876655..77888886666666.....66777************************98999******* PP

                  -GGGSSTTTT-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEESEEE CS
       PS-DH  192 peelaggesayvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieglrl 288 
                  p+++a+g++ + +hPallDaal+  a+ l    ++++ +  P+a+  ++v+     + ++l+v+ ++++      +++l +vd+++r+v++++ l l
  KIR65890.1 2695 PAATADGSAGFGVHPALLDAALHPTAL-L--PGDGTTGPKAPFAFAGVQVHA---VGADTLRVRLTRAG-----TAVRLLAVDDTDRPVVTVDSLVL 2780
                  *****99999*************6532.3..3689****************7...45556666666544.....479999***************** PP

                  EE--XX CS
       PS-DH  289 rrvere 294 
                  r  + +
  KIR65890.1 2781 REMTGG 2786
                  998765 PP

  == domain 2  score: 175.2 bits;  conditional E-value: 2.1e-54
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hpllG+ v+ a  + vv   rl++a +pwL++H v ++vv+Pg++ +e+a+ A+ ++     + +lr+++i ++lvlp +++v+vq+++ + +   +
  KIR65890.1 4274 HPLLGAAVTVAGEDMVVLTGRLSVATHPWLAEHTVSDTVVVPGTALVELAVRAGDEAG----VSRLRELTIAAPLVLPATGGVRVQVRVGAPDPTGA 4366
                  9********************************************************9....899************************99955444 PP

                  ....EEEEEEE-SS-TT.EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE---GG CS
       PS-DH   98 rawvefeifSregggeewtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealaelrlpee 194 
                       + ++++++g+++w++ha+G ++  ++++      +     +++p+ l +v+ + +Y  la  gl yGp F+glr++w+gdge++ae++lp+e
  KIR65890.1 4367 ---RPVAVHAETDGDSGWVRHAEGVLEPVAAEE------P--VVGAWPPVGLPEVDLSGWYAGLAGLGLVYGPVFRGLRRVWAGDGEVFAEVALPDE 4452
                  ...58999999999999**********665555......3..3588999999********************************************* PP

                  GSSTTTT-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEESEEEEE- CS
       PS-DH  195 laggesayvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieglrlrrv 291 
                  ++ g++a+ +hPallDaal+ +++ l  ++e+   a++P+ ++ ++v+    +  +    ++rl+++g    +++l++vde+G +v++++ + lr +
  KIR65890.1 4453 VE-GAAAFGVHPALLDAALHPIGLLL--ADEGPAGARVPFVFSGVQVHA---S--GARLLRVRLTRSGS---EIRLVAVDESGAPVVSVDSIVLREL 4538
                  99.5668*************776655..479*****************6...2..34566777777764...79*******************9988 PP

                  - CS
       PS-DH  292 e 292 
                  +
  KIR65890.1 4539 T 4539
                  6 PP

  == domain 3  score: 185.9 bits;  conditional E-value: 1.1e-57
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hpllG+ v+ a ++evv   rl+la  pwL+DH+v g +++Pg++ +e+a+ A+ ++       +lr++++ ++lv+p+ ++v++q+++   +d   
  KIR65890.1 6020 HPLLGASVDLAGNDEVVLTGRLSLAAYPWLADHAVSGATLVPGTALVELAVRAGDEAG----LPRLRELTMAAPLVVPDAGSVRIQVRVDGPADAPE 6112
                  9********************************************************9....888************************99966554 PP

                  ....EEEEEEE-SS-TT.EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE---GG CS
       PS-DH   98 rawvefeifSregggeewtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealaelrlpee 194 
                       ++i+Sr++g+++w++ha+G ++ a +++      +    + ++p+ +++v+++ +Y  la  gl yGp F+gl+++w+gdge++ae++lp+e
  KIR65890.1 6113 ---RPVTIYSRRDGDAGWVRHAEGVLEGASAEE------PV--VAVWPPVGVSEVDVSGWYAGLAGLGLAYGPVFRGLHRVWAGDGEVFAEVALPDE 6198
                  ...69**********9***********766655......23..4779999999******************************************99 PP

                  GSSTTTT-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEESEEEEE- CS
       PS-DH  195 laggesayvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieglrlrrv 291 
                  + + ++ + +hPallDaal+ +++ l+   e+a aa++P+ ++ ++v+    ++ + l+v+ ++ ++g     ++l++vde+G +v++++ l+lr +
  KIR65890.1 6199 AGS-SDGFGVHPALLDAALHPIGLLLG---EEASAARVPFVFSGVQVHA---SGARVLRVRLTRVGSG-----VRLVAVDESGAPVVSVDSLTLREL 6283
                  884.557*************8887775...9*****************6...4566677666666665.....89********************98 PP

                  - CS
       PS-DH  292 e 292 
                  +
  KIR65890.1 6284 T 6284
                  7 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   1.8e-18   1.5e-15       1     112 []     414     536 ..     414     536 .. 0.90
   2 !   38.0   0.0   2.2e-12   1.9e-09       1      80 [.    1968    2075 ..    1968    2109 .. 0.76
   3 !   54.2   0.0     2e-17   1.7e-14       1     109 [.    3740    3866 ..    3740    3868 .. 0.90
   4 !   43.8   0.0   3.5e-14     3e-11       1     110 [.    5498    5614 ..    5498    5616 .. 0.85
   5 !   46.4   0.0   5.5e-15   4.7e-12       1     110 [.    7253    7369 ..    7253    7371 .. 0.87
   6 !   37.6   0.0   2.9e-12   2.4e-09       1      82 [.    8778    8879 ..    8778    8888 .. 0.74

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 1.8e-18
  KAsynt_C_assoc   1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk......eeslprLlvlsgrteeaveallekleehl 85 
                     P+p+i+ ++ g + + tep pwp+      ++v+sfG++G+n+HviL++++ + ++  ++       ++  ++++ls+r+ +a++a++++l+ + 
      KIR65890.1 414 PSPHID-WSAGAVSLLTEPRPWPEVDrprrAAVSSFGISGTNAHVILEQADAAPAPGVPEdrpgllAAPAATVWALSARSTAALRAQAARLARYV 507
                     99****.****************9988999********************966666555556688899*************************** PP

  KAsynt_C_assoc  86 ldaellsllneilseeisr..lpyRGyav 112
                     + ++ l+ +  + s + +r  +++R+ +v
      KIR65890.1 508 RARAGLDPARLAWSLAATRseFEHRAAVV 536
                     *******9998888877777799999876 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 2.2e-12
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk.......................eeslprL..l 64  
                      P p+++ ++ g +++ te+ pwp+      ++v+sfG++G+n+Hvi+++++++ +++++                         ++ p L  +
      KIR65890.1 1968 PTPHVD-WTAGAVELLTEARPWPQVDrprrAAVSSFGVSGTNAHVIIEQPPTPVADDATAeqppgatvqrqdgvtadrphgdaGHPAPPLvpV 2059
                      99****.****************9888999*********************776666655444555566666666666666664444444113 PP

  KAsynt_C_assoc   65 vlsgrteeaveallek 80  
                      +ls+r e ++++++++
      KIR65890.1 2060 LLSARGEGGLSRQATR 2075
                      4566666666666665 PP

  == domain 3  score: 54.2 bits;  conditional E-value: 2e-17
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk.............eeslprLlvlsgrteeavea 76  
                      P+p+i+ ++ g +++ te+ pwp++     ++++sfG++G+n+Hv++++++   r+ ++               + +p  ++lsgrt++a+ a
      KIR65890.1 3740 PSPHID-WTAGAVELATEARPWPETGrprrAAISSFGVSGTNAHVVIEQPPADPRPARPGeaavrsgdasahtGDAHPAAVLLSGRTQAALAA 3831
                      99****.***************99888999*********************77777777778899999999999******************* PP

  KAsynt_C_assoc   77 llekleehlldaellsllneilseeisr..lpyRG 109 
                      ++++ + +l+ ++  + ++   s+ ++r  l++R+
      KIR65890.1 3832 QADRWARWLAADPTPRPADVGWSSVVTRatLEHRA 3866
                      ********999998888888887777776777775 PP

  == domain 4  score: 43.8 bits;  conditional E-value: 3.5e-14
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeeskeeslp..rLlvlsgrteeaveallekleehlld 87  
                      P+p+++ ++ g + + te+tpwp       ++v+sfG++G+n+Hvi+++++ e ++    e+ +p    ++ls+rt+ a+  ++ + + +l+ 
      KIR65890.1 5498 PSPHVD-WAAGAVALATEATPWPVVDrprrAAVSSFGISGTNAHVIIEQPPVEVAEGVVVERVTPpvVPVLLSARTDTALAGQAGRWARWLAG 5589
                      99****.***************98877889*********************666665555444440055789********************9 PP

  KAsynt_C_assoc   88 aellsllneilseeisr..lpyRGy 110 
                      +  l+ l+ + s+ ++r  l+ R+ 
      KIR65890.1 5590 DGSLAALDVAWSSVTTRpaLEQRAV 5614
                      9999999999998888877777765 PP

  == domain 5  score: 46.4 bits;  conditional E-value: 5.5e-15
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeeskeeslprL..lvlsgrteeaveallekleehlld 87  
                      P+p+++ ++ g + + te+tpwp       ++v+sfG++G+n+Hvi+++++ e  +    e+ +p +  ++ls+rt+ a+  ++ + + +l+d
      KIR65890.1 7253 PSPHVD-WAAGAVALATEATPWPAVDrprrAAVSSFGISGTNAHVIVEQPPAEVVEGVVVERVTPPVvpVLLSARTDGALAGQAGRWARWLAD 7344
                      99****.***************99888999*********************888777666555554411679********************* PP

  KAsynt_C_assoc   88 aellsllneilseeisr..lpyRGy 110 
                      +  l+ l+ + s+ ++r  l+ R+ 
      KIR65890.1 7345 DGSLAALDVAWSSVTTRpaLEQRAV 7369
                      *********9999888877877765 PP

  == domain 6  score: 37.6 bits;  conditional E-value: 2.9e-12
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk.................eeslprLlvlsgrtee 72  
                      P+p+++ ++   l + te+ pw+ +     +gv+sfG++G+n+HviL++++ e+  e  +                        +++s+ t++
      KIR65890.1 8778 PSPHVD-WAASPLALLTEARPWDADGrprrAGVSSFGISGTNAHVILEQAPAEDLVEPIEplglagsgsaglaersaAGGAALPWPVSAATAA 8869
                      99****.***************88777899********************9776655544455555555555555543334444666666666 PP

  KAsynt_C_assoc   73 aveallekle 82  
                      ++++++++l+
      KIR65890.1 8870 GLRDQADRLA 8879
                      6666666665 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   4.3e-13   3.6e-10       3      67 .]    1500    1565 ..    1498    1565 .. 0.90
   2 !   45.2   0.0   1.1e-14   9.1e-12       3      67 .]    3276    3341 ..    3274    3341 .. 0.92
   3 !   43.7   0.0   3.1e-14   2.7e-11       3      67 .]    5032    5097 ..    5030    5097 .. 0.92
   4 !   42.3   0.0   8.6e-14   7.3e-11       3      67 .]    6788    6853 ..    6787    6853 .. 0.92
   5 !   42.3   0.1   8.1e-14   6.9e-11       2      67 .]    8308    8374 ..    8307    8374 .. 0.92
   6 !   42.4   0.0   7.8e-14   6.7e-11       3      67 .]    9848    9913 ..    9846    9913 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 4.3e-13
  PP-binding    3 lrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +r  +a +lg   +++++p   + +lG+DSl+avel ++l ++ g+++p + +f++p++a+la +l
  KIR65890.1 1500 VRGHAAAILGHtGTDAVKPKRAFKELGFDSLTAVELRNQLTAATGLALPTTLIFDYPNPAALAGHL 1565
                  778888999974555688*********************************************997 PP

  == domain 2  score: 45.2 bits;  conditional E-value: 1.1e-14
  PP-binding    3 lrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +r lva+vlg   +e++ +d  +++lG+DSl+av+l ++++++ g+++ ++ +f++pt+ +laa++
  KIR65890.1 3276 VRGLVAQVLGHgGAEAVPADRAFRELGFDSLTAVDLRNRVNAATGLRLASTLVFDYPTPTALAAHV 3341
                  899********54444669999******************************************97 PP

  == domain 3  score: 43.7 bits;  conditional E-value: 3.1e-14
  PP-binding    3 lrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +r lva+vlg   +e++ +d  +++lG+DSl+av+l ++++++ g+++ ++ +f++pt+a la++l
  KIR65890.1 5032 VRGLVAQVLGHgGAEAVPADRAFRELGFDSLTAVDLRNRVNAATGLRLASTLVFDYPTPAVLAEHL 5097
                  899********54444669999******************************************97 PP

  == domain 4  score: 42.3 bits;  conditional E-value: 8.6e-14
  PP-binding    3 lrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +r lva+vlg   +e++ +d  +++lG+DSl+av+l ++++++ g+++ ++ +f++pt+a la++l
  KIR65890.1 6788 VRGLVAQVLGHgGAEAVPADRAFRELGFDSLTAVDLRNRVNAATGLRLGSTLVFDYPTPAVLAEHL 6853
                  899********54444669999******************************************97 PP

  == domain 5  score: 42.3 bits;  conditional E-value: 8.1e-14
  PP-binding    2 klrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   +r+ +a vlg  +++++ +   +++lG+DSl+av+l  +l ++ g+++p++++f+hp+ aela++l
  KIR65890.1 8308 LVRAEAAAVLGHdSTDQVPAGRAFRELGFDSLAAVQLRDRLGRATGLTLPSTVVFDHPSAAELARFL 8374
                  689999*****955555779999*****************************************986 PP

  == domain 6  score: 42.4 bits;  conditional E-value: 7.8e-14
  PP-binding    3 lrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  + + +a vlg+ ++ +++p   +++ G+DS++avel ++l+ + g ++p s++f++pt+ +la++l
  KIR65890.1 9848 VAAQAAAVLGLpDAGDLGPGRAFREVGFDSMTAVELRNRLRSATGATLPASVVFDYPTPLALARHL 9913
                  6677899****777779***********************************************97 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.8   3.5e-17     3e-14       2     185 ..    1214    1397 ..    1213    1407 .. 0.86
   2 !   47.8   0.1   1.3e-15   1.1e-12       2     188 ..    2990    3173 ..    2989    3180 .. 0.86
   3 !   40.1   0.8     3e-13   2.6e-10       2     161 ..    4746    4906 ..    4745    4930 .. 0.87
   4 !   37.0   0.4   2.7e-12   2.3e-09       2     161 ..    6501    6661 ..    6500    6685 .. 0.88
   5 !   44.2   2.6   1.7e-14   1.4e-11       2     166 ..    8031    8189 ..    8030    8194 .. 0.89
   6 ?   -1.7   0.2         2   1.7e+03       2      33 ..    9593    9624 ..    9593    9647 .. 0.75

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 3.5e-17
                  EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESC...HHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGG CS
   adh_short    2 vvlvtGassGIGraiakelakeGakvvv.vdrs...eekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfs 94  
                  ++lvtG+++ IG + a+ la++Ga+++v ++r+   ++ ++e+a+el ++g +++++++D++dre+v alv+   +++ +l ++ + AGit+ ++  
  KIR65890.1 1214 TILVTGGTGAIGAQAARWLAANGAEHLVlTSRRglaAAGAAELADELTATGVRVTVAACDMADREQVAALVAGL-DDVAPLTAVLHAAGITQLTALV 1309
                  69*************************94444322245566777777777***********************9.99******************** PP

                  GCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHH.HHHHGGGTEEEEEEEESSBSSH CS
   adh_short   95 elseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrsl.akelaptgirvnavaPGlvdTd 185 
                  +++ +  + v++  + g+++l +++     ++   + v+ +S+ g  ++ g+ aY+A+ a +++l+++  a+ la t+++  a a G+++T 
  KIR65890.1 1310 DTDLDVLDHVMAGKVAGAVHLDELLG----DRPLDAFVTFASISGVWGSGGQGAYAAANAYLDALAEQRrARGLAATSVSWGAWAEGGMATT 1397
                  *******************9877744....5677899***************************9987515678888888888888888753 PP

  == domain 2  score: 47.8 bits;  conditional E-value: 1.3e-15
                  EEEEESTTSHHHHHHHHHHHHT.T-EEEE.EESC...HHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    2 vvlvtGassGIGraiakelake.Gakvvv.vdrs...eekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                  +vlvtG+++ +G  +a++l+++ G++ ++ v+r+   ++ ++ +a+el  +ga++ ++++Dvtd ++v+alv +  ++ g+l  +v+ AG+  ++ +
  KIR65890.1 2990 TVLVTGGTGALGALLARHLVTDrGVDSLAlVSRRgpaADGAADLAAELTGLGARVDVLACDVTDPDAVRALVGRLTADGGRLAGVVHTAGVLDDAVV 3086
                  69*****************97538888885666522245566677777777********************************************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188 
                    +++++  rv++  + ++ +l +a +           v  sS+ag  +++g+ aY+A+    +++ ++la   + +g + +++a G+ dTd ++
  KIR65890.1 3087 TGIDADRLARVLAPKVDAAWHLHEATAGL----DLDLFVMFSSIAGVLGSPGQGAYAAA----NHFLDALAAHRRARGLTAHSLAWGMWDTDGMA 3173
                  **********************9998877....45689******************986....67778888888889999999999999998655 PP

  == domain 3  score: 40.1 bits;  conditional E-value: 3e-13
                  EEEEESTTSHHHHHHHHHHHHT.T-EEEE.EESCHHH...HHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    2 vvlvtGassGIGraiakelake.Gakvvv.vdrseek...leevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                  +vl tG+++ +G  +a++l+++ G++ +v v+r+ ++   + +v++ l  +ga++ + ++Dvtd+e+v+alv +  ++ g+l  +v+ AG+  ++ +
  KIR65890.1 4746 AVLLTGGTGALGALVAEHLVSAhGVRSLVlVSRRGRAaagADAVVERLAGLGASVEVSACDVTDAEAVRALVGRLTADGGRLAGVVHTAGVLDDAVV 4842
                  599****************97438888876766554401145667777777********************************************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltr 161 
                    +++++  rv++  + ++ +l +a +           v  sS+ag  +++g+ aY+A  a+++gl+ 
  KIR65890.1 4843 TGIDADRLARVLAPKVDAAWHLHEATAGL----DLDLFVVFSSIAGVLGSPGQGAYAAGNAFLDGLAA 4906
                  **********************9998877....34589999******************999999875 PP

  == domain 4  score: 37.0 bits;  conditional E-value: 2.7e-12
                  EEEEESTTSHHHHHHHHHHHH.TT-EEEE.EESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SS CS
   adh_short    2 vvlvtGassGIGraiakelak.eGakvvv.vdrseekleevakelkee....gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgp 92  
                  +vlvtG+++ +G  +a++l++  G++ +v v+r+ + ++  a+el       ga++ ++++Dvtd+e+v+ lv +  ++  +l  +v+ AG+  +g 
  KIR65890.1 6501 AVLVTGGTGALGALVAEHLVSvHGVRSLVlVSRRGA-AADGADELTGRlsglGASVEVAACDVTDAEAVQSLVGRLTADGRRLAGVVHTAGVLDDGL 6596
                  59*****************98579999995666655.55666666555577799******************************************* PP

                  GGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHH CS
   adh_short   93 fselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltr 161 
                  ++ l+ e+  +v++  + ++ +l +a +           v  sS+ag  +++g+ aY+A  a+++gl+ 
  KIR65890.1 6597 VEGLTGERLAAVLAPKVDAAWHLHEATAGL----DLDLFVVFSSIAGVLGSPGQGAYAAGNAFLDGLAA 6661
                  ********************9999998877....34588999******************999999875 PP

  == domain 5  score: 44.2 bits;  conditional E-value: 1.7e-14
                  EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGC CS
   adh_short    2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfsel 96  
                  +vlvtG+++ +Gr +a+ l+++Ga  vv ++r+ +++  +a+ ++e++  + ++++Dvtd+++v+alv+        l ++v+ AG   g++p++e 
  KIR65890.1 8031 TVLVTGGTGALGRHTARWLLANGAAEVVlASRRGADAPGAAELIEELAGAVRVVACDVTDAAAVDALVAGL----PALTAVVHTAGAsGGTVPAHEA 8123
                  69*********************8766648999999988888889889**************999999887....999*********8899****** PP

                  SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHH CS
   adh_short   97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslake 166 
                  ++++  ++++  + g+++l +a+          + v  sSvag  +  g+a Y+A  a +++l+ + + e
  KIR65890.1 8124 TAADLSATLAGKVLGALHLDAACRSR----DLDAFVVFSSVAGVWGGGGQAGYAAGNALLDALVAARRAE 8189
                  ******************99886544....45577888*****************999888888776655 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 2
                  EEEEESTTSHHHHHHHHHHHHTT-EEEEEESC CS
   adh_short    2 vvlvtGassGIGraiakelakeGakvvvvdrs 33  
                  +vlvtG+++ +       l ++Ga vv +d+ 
  KIR65890.1 9593 TVLVTGGAGTVAGHATAWLGRQGAAVVPLDQP 9624
                  69*********9999999********987653 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.1   3.5e-10     3e-07      54     117 ..     179     240 ..     175     257 .. 0.88
   2 !   27.1   0.1   2.7e-09   2.3e-06      65     115 ..    1744    1792 ..    1730    1801 .. 0.85
   3 ?    1.1   0.0      0.25   2.1e+02     111     161 ..    3302    3352 ..    3298    3358 .. 0.95
   4 !   32.2   0.1   7.8e-11   6.6e-08      51     117 ..    3504    3568 ..    3493    3589 .. 0.87
   5 !   32.1   0.2   8.3e-11   7.1e-08      51     117 ..    5260    5324 ..    5258    5345 .. 0.88
   6 !   32.2   0.1   7.9e-11   6.7e-08      51     117 ..    7017    7081 ..    7011    7101 .. 0.90
   7 !   31.9   0.1     1e-10   8.6e-08      62     117 ..    8551    8604 ..    8540    8621 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 3.5e-10
                 SCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N  54 lqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117
                 l++ +++ ++  +a ++g+  e pavtv+ +csS+l a++la+q++++ge+d ++agGv  m +
  KIR65890.1 179 LTGTATSVVSGRIAYALGL--EGPAVTVDTACSSSLVALHLACQALRSGEFDLALAGGVTVMAT 240
                 6667777788888999999..99************************************99976 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 2.7e-09
                  HHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEES CS
  Thiolase_N   65 qaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsm 115 
                   ++   g+  e pavtv+ +csS+l a++la+qs++ ge+d +vagGv  m
  KIR65890.1 1744 RVSYTFGL--EGPAVTVDTACSSSLVALHLAVQSLRQGECDLAVAGGVTVM 1792
                  55566666..889**********************************9887 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.25
                  EEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHH CS
  Thiolase_N  111 GvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaen 161 
                  G  s+++++ ++++++ +gl+l ++ + d   p++la  ++e+  G+ta++
  KIR65890.1 3302 GFDSLTAVDLRNRVNAATGLRLASTLVFDYPTPTALAAHVHEQLTGVTADR 3352
                  899**********************************************97 PP

  == domain 4  score: 32.2 bits;  conditional E-value: 7.8e-11
                  EHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N   51 GnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117 
                  G + ++++g+ ++  +a   g+  e pavtv+ +csS+l a++laaq++++ge+d ++agGv  m +
  KIR65890.1 3504 GYIGTGNSGSVVSGRVAYTFGL--EGPAVTVDTACSSSLVALHLAAQALRSGECDLALAGGVTVMAT 3568
                  5566778899999999999999..99************************************99976 PP

  == domain 5  score: 32.1 bits;  conditional E-value: 8.3e-11
                  EHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N   51 GnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117 
                  G v ++ +g+ ++  +a   g+  e pavtv+ +csS+l a++laaq++++ge+d ++agGv  m +
  KIR65890.1 5260 GYVGTGTSGSVLSGRVAYTFGL--EGPAVTVDTACSSSLVALHLAAQALRSGECDLALAGGVTVMAT 5324
                  5677788899999999999999..99************************************99976 PP

  == domain 6  score: 32.2 bits;  conditional E-value: 7.9e-11
                  EHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N   51 GnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117 
                  G v ++ +g+ ++  +a   g+  e pavtv+ +csS+l a++laaq++++ge+d ++agGv  m +
  KIR65890.1 7017 GYVGTGTSGSVLSGRVAYTFGL--EGPAVTVDTACSSSLVALHLAAQALRSGECDLALAGGVTVMAT 7081
                  6778888999999999999999..99************************************99975 PP

  == domain 7  score: 31.9 bits;  conditional E-value: 1e-10
                  HHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N   62 iarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117 
                  ++  +a   g+  + pavtv+ +csS+l a++laaq++++ge+d ++agGv  ms+
  KIR65890.1 8551 VSGRLAYSFGL--HGPAVTVDTACSSSLVALHLAAQALRSGECDLALAGGVTVMST 8604
                  55666677777..88***************************************96 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       7.7   6.6e+03      10      49 ..     741     784 ..     740     787 .. 0.84
   2 !   36.6   4.5   4.1e-12   3.5e-09       5     164 ..    1223    1384 ..    1219    1436 .. 0.80
   3 !   37.7   0.1   1.9e-12   1.6e-09      23     180 ..    3019    3173 ..    3000    3199 .. 0.82
   4 !   30.9   0.7   2.1e-10   1.8e-07      21     151 ..    4773    4904 ..    4754    4953 .. 0.79
   5 !   27.1   0.1   3.3e-09   2.8e-06      22     151 ..    6529    6659 ..    6510    6708 .. 0.81
   6 !   26.2   4.4   6.1e-09   5.2e-06       6     152 ..    8041    8183 ..    8036    8189 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 7.7
                   HHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E..EE-- CS
  adh_short_C2  10 iAkalaeeGaevvltdlneea.kkrveelaeelgae.v..lecD 49 
                   +A a+a+eG +  + d++ ++   +v+++a+++ a+ +  ++ D
    KIR65890.1 741 LAAAYAAEGVRARIIDIDYAShSPAVQPVADRMRADlAgvVPGD 784
                   58999*************9999999******9998852447766 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 4.1e-12
                    SHHHHHHHHHHHTT-E.EEEEESSGGHHHHHHHHHHHTTSE.E....EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2    5 gIGraiAkalaeeGae.vvltdlneeakkrveelaeelgae.v....lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsre 93  
                     IG+++A+ la++Gae +vlt ++  a++ ++ela+el a+ v     +cD +d+eqv+alv+ + + +  l  ++++agi++   + +++t+ +
    KIR65890.1 1223 AIGAQAARWLAANGAEhLVLTSRRGLAAAGAAELADELTATgVrvtvAACDMADREQVAALVAGLDD-VAPLTAVLHAAGITQL--TALVDTDLD 1314
                    59*************968888888777999999**9999766344679****************875.679*************..********* PP

                    HHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHH.HHHHGGGTE CS
  adh_short_C2   94 efdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtryl.Avelgpkgi 164 
                     +d++++ ++ ++++l     +l+ ++   + v+ +s+++  +  ++ ay+aa a l al+ +  A+ l++  +
    KIR65890.1 1315 VLDHVMAGKVAGAVHL----DELLGDRplDAFVTFASISGVWGSGGQGAYAAANAYLDALAEQRrARGLAATSV 1384
                    ******9888888766....55566555689**************************99975422555555555 PP

  == domain 3  score: 37.7 bits;  conditional E-value: 1.9e-12
                    EEESSGGHHHHHHHHHHHTT...SEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHH CS
  adh_short_C2   23 ltdlneeakkrveelaeelg...aev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllaka 112 
                    l+ ++  a++ +++la+el    a+v  l+cDVtd+++v+alv +++++ g+l ++v+ ag+ ++  + ++ ++ + ++r+l+ ++ ++++l +a
    KIR65890.1 3019 LVSRRGPAADGAADLAAELTglgARVdvLACDVTDPDAVRALVGRLTADGGRLAGVVHTAGVLDD--AVVTGIDADRLARVLAPKVDAAWHLHEA 3111
                    5555555555566666664433366455*************************************..99999********************999 PP

                    HHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGG CS
  adh_short_C2  113 alplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaas 180 
                     + l       v  ss+++  + p++ ay+aa + l a    lA++  ++g + ++ + g+ +T+ ++
    KIR65890.1 3112 TAGLDL--DLFVMFSSIAGVLGSPGQGAYAAANHFLDA----LAAHRRARGLTAHSLAWGMWDTDGMA 3173
                    987644..679*******************99988876....57777777888888888888887544 PP

  == domain 4  score: 30.9 bits;  conditional E-value: 2.1e-10
                    EEEEESSGGH...HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHH CS
  adh_short_C2   21 vvltdlneea...kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslflla 110 
                    +vl+ ++ +a   +++v e  + lga+v   +cDVtd e+v+alv +++++ g+l ++v+ ag+ ++  + ++ ++ + ++r+l+ ++ ++++l 
    KIR65890.1 4773 LVLVSRRGRAaagADAVVERLAGLGASVevSACDVTDAEAVRALVGRLTADGGRLAGVVHTAGVLDD--AVVTGIDADRLARVLAPKVDAAWHLH 4865
                    444444444413333333333446666444*************************************..99999********************9 PP

                    HHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHH CS
  adh_short_C2  111 kaalplmkeggsivnlssvgaervvpnynaygaaKaaleal 151 
                    +a + l       v  ss+++  + p++ ay+a  a l +l
    KIR65890.1 4866 EATAGLDL--DLFVVFSSIAGVLGSPGQGAYAAGNAFLDGL 4904
                    99887644..579999***************9988877775 PP

  == domain 5  score: 27.1 bits;  conditional E-value: 3.3e-09
                    EEEESSGGHHHHHHHHHHHTT...SEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHH CS
  adh_short_C2   22 vltdlneeakkrveelaeelg...aev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllak 111 
                    vl+ ++ +a++ ++el+ +l+   a+v   +cDVtd e+v++lv +++++  +l ++v+ ag+ ++  g ++ ++ e ++ +l+ ++ ++++l +
    KIR65890.1 6529 VLVSRRGAAADGADELTGRLSglgASVevAACDVTDAEAVQSLVGRLTADGRRLAGVVHTAGVLDD--GLVEGLTGERLAAVLAPKVDAAWHLHE 6621
                    55555555555556665554433355444*************************************..999**********************99 PP

                    HHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHH CS
  adh_short_C2  112 aalplmkeggsivnlssvgaervvpnynaygaaKaaleal 151 
                    a + l       v  ss+++  + p++ ay+a  a l +l
    KIR65890.1 6622 ATAGLDL--DLFVVFSSIAGVLGSPGQGAYAAGNAFLDGL 6659
                    9887644..5799999**************9988877775 PP

  == domain 6  score: 26.2 bits;  conditional E-value: 6.1e-09
                    HHHHHHHHHHHTT-.EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2    6 IGraiAkalaeeGa.evvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97  
                    +Gr++A+ l ++Ga evvl+ ++ +++  ++el eel  +v  ++cDVtd ++v+alv+     +  l  +v+ ag +   + p++e++ +++  
    KIR65890.1 8041 LGRHTARWLLANGAaEVVLASRRGADAPGAAELIEELAGAVrvVACDVTDAAAVDALVAG----LPALTAVVHTAGASGG-TVPAHEATAADLSA 8130
                    79***********736999999999999999999999977444********999999987....56789**********9.9************* PP

                    HHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHH CS
  adh_short_C2   98 aldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealt 152 
                    +l+ ++ ++++l  a++   ++  + v  ssv++  +  +++ y+a  a l al+
    KIR65890.1 8131 TLAGKVLGALHLDAACRS--RDLDAFVVFSSVAGVWGGGGQAGYAAGNALLDALV 8183
                    ******999998777754..45589999999999999999999999988888876 PP

>> PKS_DE  Polyketide synthase dimerisation element domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   6.1   2.2e-14   1.9e-11       1      45 []     932     978 ..     932     978 .. 0.91
   2 !   49.2   6.3   6.5e-16   5.6e-13       1      43 [.    7769    7812 ..    7769    7813 .. 0.90
   3 !   32.9   2.9   8.4e-11   7.2e-08       1      44 [.    9331    9370 ..    9331    9370 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 2.2e-14
      PKS_DE   1 DaaFWaaVereDlaaLaatLgldada..sLsavLPaLsaWRrrrreR 45 
                 D +FW+aVer+D+aaLaa+L+ ++++   L+++LP+Ls+WR+ r +R
  KIR65890.1 932 DVEFWSAVERADVAALAAQLDGAPADleVLAPALPVLSSWRKARLQR 978
                 789*******************5555678***************998 PP

  == domain 2  score: 49.2 bits;  conditional E-value: 6.5e-16
      PKS_DE    1 DaaFWaaVereDlaaLaatLgl..dada.sLsavLPaLsaWRrrrr 43  
                  Da+FWaaVer+Dl+aLaa+Lg   d    +Ls++LPaLs WR+ r 
  KIR65890.1 7769 DAEFWAAVERGDLTALAAQLGDsaD--LdALSSALPALSHWRQART 7812
                  9*********************544..356************9985 PP

  == domain 3  score: 32.9 bits;  conditional E-value: 8.4e-11
      PKS_DE    1 DaaFWaaVereDlaaLaatLgldadasLsavLPaLsaWRrrrre 44  
                  DaaFW aV ++Dl+ L    g+d  ++L+++LP L +WRrr++e
  KIR65890.1 9331 DAAFWRAVTDGDLDRL----GIDTSQPLRDLLPELESWRRRQHE 9370
                  9*************88....6776778**************987 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.6   1.2e-07   0.00011       1      93 [.    1215    1321 ..    1215    1358 .. 0.76
   2 !   14.1   0.2   2.8e-05     0.024       1      66 [.    2991    3067 ..    2991    3137 .. 0.72
   3 !   11.7   0.5   0.00015      0.13       1      66 [.    4747    4823 ..    4747    4891 .. 0.73
   4 !   11.4   0.3   0.00018      0.16       1      66 [.    6502    6578 ..    6502    6644 .. 0.78
   5 !   41.7   0.6     1e-13   8.9e-11       1     117 [.    8032    8161 ..    8032    8174 .. 0.80
   6 ?    0.0   0.1      0.57   4.9e+02       1      32 [.    9594    9625 ..    9594    9662 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.2e-07
                  EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC...........EEEE--TT-HHHHHHHH...HHH.T-SEEEE--S---HHHHHH CS
   Epimerase    1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl...........elveldltdrsalerlf...kee.qpdavihlAavggvaasse 82  
                  ilVtG+tG iG++ ++ l+++g e ++l++++   + ++ e l           ++  +d+ dr+++++l+   +++   +av+h+A++    a ++
  KIR65890.1 1215 ILVTGGTGAIGAQAARWLAANGAEHLVLTSRRGLAAAGAAE-LadeltatgvrvTVAACDMADREQVAALVaglDDVaPLTAVLHAAGITQLTALVD 1310
                  8*********************9966666664333333322.24668******************77777611156657799999999988888888 PP

                  SHHHHHHHHTH CS
   Epimerase   83 dpadfieknlq 93  
                  +  d++++ ++
  KIR65890.1 1311 TDLDVLDHVMA 1321
                  88887775444 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.8e-05
                  EEEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTTTCHHCHHC...........EEEE--TT-HHHHHHHHHHHT-S CS
   Epimerase    1 ilVtGatGfiGsalvkallekg.ye.vigldrlssasntarledl...........elveldltdrsalerlfkeeqpd 66  
                  +lVtG+tG +G+ l+++l +   ++ +  ++r+  a   a  +dl           ++  +d+td++a+++l+ +  +d
  KIR65890.1 2991 VLVTGGTGALGALLARHLVTDRgVDsLALVSRRGPAADGA--ADLaaeltglgarvDVLACDVTDPDAVRALVGRLTAD 3067
                  79***************97655499566666664433333..3335689********************9998766555 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00015
                  EEEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHHHHT-S CS
   Epimerase    1 ilVtGatGfiGsalvkallekg.ye.vigldrlssasntarledl..........elveldltdrsalerlfkeeqpd 66  
                  +l+tG+tG +G+ ++++l +++ ++ ++ ++r+ +a + a ++ +          e+  +d+td++a+++l+ +  +d
  KIR65890.1 4747 VLLTGGTGALGALVAEHLVSAHgVRsLVLVSRRGRAAAGA-DAVVerlaglgasvEVSACDVTDAEAVRALVGRLTAD 4823
                  699***************9887777577777775444433.3333799********************9998766555 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.00018
                  EEEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTTTCHHCHHC...........EEEE--TT-HHHHHHHHHHHT-S CS
   Epimerase    1 ilVtGatGfiGsalvkallekg.ye.vigldrlssasntarledl...........elveldltdrsalerlfkeeqpd 66  
                  +lVtG+tG +G+ ++++l + + ++ ++ ++r+  a   +++e l           e+  +d+td++a++ l+ +  +d
  KIR65890.1 6502 VLVTGGTGALGALVAEHLVSVHgVRsLVLVSRRGAAAD-GADE-LtgrlsglgasvEVAACDVTDAEAVQSLVGRLTAD 6578
                  79****************99766775777777733333.3222.25799******************999988665544 PP

  == domain 5  score: 41.7 bits;  conditional E-value: 1e-13
                  EEEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHH.T-SEEEE--S..---HHHHHHSHHH CS
   Epimerase    1 ilVtGatGfiGsalvkallekg.yevigldrlssasntarledl.......elveldltdrsalerlfkee.qpdavihlAa..vggvaassedpad 86  
                  +lVtG+tG +G+++++ ll++g  ev+  +r+  + + ++ e +       ++v +d+td++a+++l++   + +av+h A+   g+v+a   ++ad
  KIR65890.1 8032 VLVTGGTGALGRHTARWLLANGaAEVVLASRRGADAP-GAAELIeelagavRVVACDVTDAAAVDALVAGLpALTAVVHTAGasGGTVPAHEATAAD 8127
                  79********************666777777744333.333323567************************9********77555566666665555 PP

                  ...HHHHHTHHHHHHHHHHHHHTCTEEEEEEEGG CS
   Epimerase   87 ...fieknlqgtlnlleaarkagvkrllflsSse 117 
                     ++   + g+l+l  a+r ++++ ++ +sS++
  KIR65890.1 8128 lsaTLAGKVLGALHLDAACRSRDLDAFVVFSSVA 8161
                  111677899***********************53 PP

  == domain 6  score: 0.0 bits;  conditional E-value: 0.57
                  EEEETTTSHHHHHHHHHHHHCTSEEEEEES-S CS
   Epimerase    1 ilVtGatGfiGsalvkallekgyevigldrls 32  
                  +lVtG++G +  + +  l ++g  v+ ld+  
  KIR65890.1 9594 VLVTGGAGTVAGHATAWLGRQGAAVVPLDQPA 9625
                  79*********************999999874 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   4.9e-07   0.00042       1      80 [.    1216    1291 ..    1216    1338 .. 0.83
   2 !    9.4   0.0   0.00071      0.61       1      74 [.    2992    3064 ..    2992    3078 .. 0.82
   3 !    8.7   0.0    0.0012         1       1      74 [.    4748    4820 ..    4748    4834 .. 0.80
   4 !   11.1   0.0   0.00022      0.19       1      74 [.    6503    6575 ..    6503    6587 .. 0.83
   5 !   24.8   0.0   1.6e-08   1.3e-05       1     119 [.    8033    8152 ..    8033    8171 .. 0.74
   6 ?    1.7   0.0      0.17   1.4e+02       1      45 [.    9595    9639 ..    9595    9648 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.9e-07
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEE CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevy 80  
                     L+TG++G iG+  a++L ++g e  +++ r  + ++g  e la++  + +  ++++  +D+ D++++  l+a    d v 
     KIR65890.1 1216 LVTGGTGAIGAQAARWLAANGAEHLVLTSRRGLAAAGAAE-LADEL-TATGVRVTVAACDMADREQVAALVAGL--DDVA 1291
                     9***********************9999999988877665.65443.45677*****************99876..4444 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00071
                     EEETTTSHHHHHHHHHHHH.CT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLle.kgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev 74  
                     L+TG++G  G+ la++L++ +g +   +v r    + g    la +  + l  ++ +  +D+tD ++++ l+ + 
     KIR65890.1 2992 LVTGGTGALGALLARHLVTdRGVDSLALVSRRGPAADGAA-DLAAE-LTGLGARVDVLACDVTDPDAVRALVGRL 3064
                     9****************96269999999999887665555.45543.346789***************9998765 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0012
                     EEETTTSHHHHHHHHHHHHC.T-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlek.gyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev 74  
                     L TG++G  G+ +ae+L++  g +  ++v r    ++g  + +++   + l  ++++  +D+tD+++++ l+ + 
     KIR65890.1 4748 LLTGGTGALGALVAEHLVSAhGVRSLVLVSRRGRAAAGADAVVER--LAGLGASVEVSACDVTDAEAVRALVGRL 4820
                     78****************874778777777777766554444333..3467889***************998766 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 0.00022
                     EEETTTSHHHHHHHHHHHHC.T-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlek.gyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev 74  
                     L+TG++G  G+ +ae+L++  g +  ++v r  + +++  ++l+ +  + l  ++++  +D+tD++++++l+ + 
     KIR65890.1 6503 LVTGGTGALGALVAEHLVSVhGVRSLVLVSRRGA-AADGADELTGRL-SGLGASVEVAACDVTDAEAVQSLVGRL 6575
                     9*****************9636777777666655.567888888765.56889*****************99776 PP

  == domain 5  score: 24.8 bits;  conditional E-value: 1.6e-08
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH.T-SEEEE--S---HHHHTT CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev.qpdevynLAAqshVdvsfe 93  
                     L+TG++G  G ++a++Ll++g   +++  r  + + g  e ++     el + ++++ +D+tD+++++ l+a     ++v++ A+ s   v  +
     KIR65890.1 8033 LVTGGTGALGRHTARWLLANGAAEVVLASRRGADAPGAAELIE-----ELAGAVRVVACDVTDAAAVDALVAGLpALTAVVHTAGASGGTVPAH 8121
                     9********************9888888777776666665554.....456789******************99789********997444443 PP

                     SH.....HHHHHHHTHHHHHHHHHHHHCT.. CS
  GDP_Man_Dehyd   94 kP.....eytaevnvlGtlrLLeairalgle 119 
                     ++      +t+  +vlG+l+L  a+r+  l+
     KIR65890.1 8122 EAtaadlSATLAGKVLGALHLDAACRSRDLD 8152
                     3311111356677788888888888877664 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.17
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakd 45  
                     L+TG+aG +  + + +L ++g  v+ +++ +    t+r+e+la d
     KIR65890.1 9595 LVTGGAGTVAGHATAWLGRQGAAVVPLDQPAGGKLTDRMEQLAAD 9639
                     9****************************9999999999999876 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   6.6e-06    0.0056       1      90 [.    1215    1305 ..    1215    1324 .. 0.80
   2 !    6.0   0.0    0.0064       5.5       1      73 [.    2991    3061 ..    2991    3079 .. 0.75
   3 ?    4.8   0.0     0.016        13       1      75 [.    4747    4819 ..    4747    4836 .. 0.78
   4 !    8.4   0.0    0.0012         1       1      76 [.    6502    6575 ..    6502    6599 .. 0.80
   5 !   20.2   0.0   3.1e-07   0.00027       1     128 [.    8032    8159 ..    8032    8163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.6e-06
                       EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T....-SEEEE----- CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelk....vdvvfhaAAlK 88  
                       +lvtG++G+iG +  r ++++ +++++l +r  l+    ++ l +el+++ ++v+  +  +d++d+e+++ ++  l+      +v+haA + 
       KIR65890.1 1215 ILVTGGTGAIGAQAARWLAANGAEHLVLTSRRGLAAAGAAE-LADELTATGVRVT--VAACDMADREQVAALVAGLDdvapLTAVLHAAGIT 1303
                       89******************************999887665.5577777777665..7889******9999887432211256788998776 PP

                       -H CS
  Polysacc_synt_2   89 hV 90  
                       ++
       KIR65890.1 1304 QL 1305
                       65 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0064
                       EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHT CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekal 73  
                       vlvtG++G++G  l r++++   + ++ l++r   + +  ++   +el+   l +++ ++ +dv+d + ++ ++
       KIR65890.1 2991 VLVTGGTGALGALLARHLVTDrGVDSLALVSRRGPAADGAADL-AAELTG--LGARVDVLACDVTDPDAVRALV 3061
                       89***************988769999***99998877665553.344444..3334446677888887777766 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.016
                       EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT. CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekalee 75  
                       vl+tG++G++G  + +++++   +++++l++r   +    +  + e+l+   l +++ +  +dv+d+e ++ ++ +
       KIR65890.1 4747 VLLTGGTGALGALVAEHLVSAhGVRSLVLVSRRGRAAAGADAVV-ERLAG--LGASVEVSACDVTDAEAVRALVGR 4819
                       89***************9988799********999888877766.34444..444555678899999888877665 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.0012
                       EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT.. CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel 76  
                       vlvtG++G++G  + +++++   +++++l++r   + +  ++ l+ +l+   l +++ +  +dv+d+e +++++ +l
       KIR65890.1 6502 VLVTGGTGALGALVAEHLVSVhGVRSLVLVSRRGAAADGADE-LTGRLSG--LGASVEVAACDVTDAEAVQSLVGRL 6575
                       89****************9987899******99988877766.4455555..5556668899999999999887655 PP

  == domain 5  score: 20.2 bits;  conditional E-value: 3.1e-07
                       EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT...T-SEEEE----..-- CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel.kvdvvfhaAAl..Kh 89  
                       vlvtG++G++G++  r +l++ +++++l +r        ++ + eel+       + +v +dv+d++ ++ ++  l    +v+h+A      
       KIR65890.1 8032 VLVTGGTGALGRHTARWLLANGAAEVVLASRRGADAPGAAELI-EELAG-----AVRVVACDVTDAAAVDALVAGLpALTAVVHTAGAsgGT 8117
                       89******************************99988877765.33333.....4456799*********9998763678999998652268 PP

                       HHHHHHSHHH...HHHHHHHHHHHHHHHHHHTT-SEEEEEEE CS
  Polysacc_synt_2   90 VPlveenple...aiktNvlgtenvieaaieagvkkvvliSt 128 
                       VP+ e  +++   ++   vlg+ ++  a+ + + +++v+ S+
       KIR65890.1 8118 VPAHEATAADlsaTLAGKVLGALHLDAACRSRDLDAFVVFSS 8159
                       *****9776411167789*********************996 PP

>> PikAIV_N  Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   3.6   1.4e-15   1.2e-12       1      30 []       3      32 ..       3      32 .. 0.98
   2 ?   -1.0   0.2       1.6   1.4e+03       3      12 ..    1097    1106 ..    1096    1107 .. 0.83
   3 ?   -3.1   0.1       7.5   6.4e+03       5      12 ..    9254    9261 ..    9251    9262 .. 0.82

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 1.4e-15
    PikAIV_N  1 tsdeklVeALRaSLkEnERLRqqNrrLtAA 30
                ts +k+VeALRaSLkE+ RL+q N++LtAA
  KIR65890.1  3 TSADKVVEALRASLKETSRLKQLNQQLTAA 32
                89***************************9 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
    PikAIV_N    3 deklVeALRa 12  
                  + +lV+ALR 
  KIR65890.1 1097 TTRLVQALRD 1106
                  579******6 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 7.5
    PikAIV_N    5 klVeALRa 12  
                    V+ALRa
  KIR65890.1 9254 TAVAALRA 9261
                  57*****8 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.2    0.0014       1.2       3      31 ..     204     232 ..     202     247 .. 0.87
   2 ?    3.9   0.3     0.058        50       3      27 ..    1758    1782 ..    1756    1793 .. 0.85
   3 !    9.2   0.3    0.0012       1.1       3      31 ..    3532    3560 ..    3530    3573 .. 0.87
   4 !    9.2   0.3    0.0012       1.1       3      31 ..    5288    5316 ..    5286    5329 .. 0.87
   5 !    9.2   0.3    0.0012       1.1       3      31 ..    7045    7073 ..    7043    7084 .. 0.86
   6 !   10.5   0.2   0.00048      0.41       3      38 ..    8568    8603 ..    8566    8620 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0014
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEE CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLv 31 
                  + +aCs+ ++al++A ++++sg++  +L 
   KIR65890.1 204 VDTACSSSLVALHLACQALRSGEFDLALA 232
                  5689*******************998886 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.058
                   EE-GGGHHHHHHHHHHHHHHTTS-S CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaak 27  
                   + +aCs+ ++al++A + +++g++ 
   KIR65890.1 1758 VDTACSSSLVALHLAVQSLRQGECD 1782
                   5689******************775 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0012
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEE CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLv 31  
                   + +aCs+ ++al++A+++++sg++  +L 
   KIR65890.1 3532 VDTACSSSLVALHLAAQALRSGECDLALA 3560
                   5689******************9998886 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0012
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEE CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLv 31  
                   + +aCs+ ++al++A+++++sg++  +L 
   KIR65890.1 5288 VDTACSSSLVALHLAAQALRSGECDLALA 5316
                   5689******************9998886 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.0012
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEE CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLv 31  
                   + +aCs+ ++al++A+++++sg++  +L 
   KIR65890.1 7045 VDTACSSSLVALHLAAQALRSGECDLALA 7073
                   5689******************9998886 PP

  == domain 6  score: 10.5 bits;  conditional E-value: 0.00048
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGG CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetls 38  
                   + +aCs+ ++al++A+++++sg++  +L  g  ++s
   KIR65890.1 8568 VDTACSSSLVALHLAAQALRSGECDLALAGGVTVMS 8603
                   5689********************999988877777 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   1.0     0.099        84     104     132 ..     655     683 ..     632     699 .. 0.85
   2 !    8.3   0.0     0.002       1.7     196     236 ..     718     758 ..     709     762 .. 0.82
   3 ?    2.1   0.0      0.16   1.4e+02     194     240 .]    2298    2344 ..    2283    2344 .. 0.87
   4 ?    0.2   0.0      0.61   5.2e+02     194     240 .]    4055    4101 ..    4039    4101 .. 0.78
   5 ?    4.0   0.0     0.041        35     191     240 .]    5798    5847 ..    5783    5847 .. 0.86
   6 ?    1.8   0.0       0.2   1.7e+02     193     240 .]    7555    7602 ..    7537    7602 .. 0.84
   7 ?   -1.4   0.0       1.8   1.6e+03     194     240 .]    9114    9160 ..    9104    9160 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.099
         SAT 104 stylvGlCtGllaAaavacskslseLvpl 132
                 +  +vG+++G ++Aa va + sl++ v++
  KIR65890.1 655 PRAVVGHSQGEIVAAHVAGALSLADAVKI 683
                 4579*******************998876 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.002
         SAT 196 vyisavssss.vtisGpPstleallksskakkkkkksklpiy 236
                 + +s+v++++ +++sGpP+++++l +  +a+  + +  ++i 
  KIR65890.1 718 LSVSVVNGPTaTVVSGPPQAVADLAAAYAAEGVRAR-IIDID 758
                 789*****999*************999988887766.56665 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.16
         SAT  194 srvyisavssss.vtisGpPstleallksskakkkkkksklpiyapyH 240 
                  + v i+av++++ v++sG  ++l+++ ++ +    +++ +l ++ ++H
  KIR65890.1 2298 ADVGIAAVNGPTsVVVSGAVEALDEVEQTWQGRGVRTR-RLAVSHAFH 2344
                  6788*****9999************9999999999987.999999998 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.61
         SAT  194 srvyisavssss.vtisGpPstleallksskakkkkkksklpiyapyH 240 
                  + v i+av+++s v++sG  ++l+++ +  +    +++ +l ++ ++H
  KIR65890.1 4055 ADVGIAAVNGPSaVVVSGAVEALDEVEQLWQGRGVRTR-RLAVSHAFH 4101
                  6788*****9999**********887766666666665.777777777 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.041
         SAT  191 ppasrvyisavssss.vtisGpPstleallksskakkkkkksklpiyapyH 240 
                  +  + v i+av+++s v++sG  ++l++l ++ +    +++ +l ++ ++H
  KIR65890.1 5798 TGRADVGIAAVNGPSaVVVSGAVEALDELEQTWRDRGVRTR-RLTVSHAFH 5847
                  4557889*****9999***************9999999987.999999999 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.2
         SAT  193 asrvyisavssss.vtisGpPstleallksskakkkkkksklpiyapyH 240 
                   + v i+av+++s v++sG  ++l++l +  +    +++ +l ++ ++H
  KIR65890.1 7555 RADVGIAAVNGPSaVVVSGAVEALDELEQVWRDRGVRTR-RLTVSHAFH 7602
                  46788*****9999**********999888888888876.899998888 PP

  == domain 7  score: -1.4 bits;  conditional E-value: 1.8
         SAT  194 srvyisavssss.vtisGpPstleallksskakkkkkksklpiyapyH 240 
                  + v i+av++++ v++sG   +l+++ +  +    +++ +l ++ ++H
  KIR65890.1 9114 ADVGIAAVNGPTsVVVSGAVGALDEIERAWRDRGVRTR-RLTVSHAFH 9160
                  67889****9998**********999888888888876.888888888 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.8   2.4e+03      26      48 ..     321     343 ..     312     352 .. 0.86
   2 ?    4.5   0.0     0.031        27      26      49 ..    1875    1898 ..    1854    1957 .. 0.83
   3 ?   -0.6   0.0       1.2     1e+03      27      48 ..    3650    3671 ..    3632    3684 .. 0.82
   4 ?   -2.1   0.0       3.3   2.8e+03      27      48 ..    5406    5427 ..    5398    5439 .. 0.70
   5 ?   -0.7   0.0       1.2     1e+03      27      48 ..    7163    7184 ..    7145    7196 .. 0.83
   6 ?    3.8   0.0     0.051        43      26      48 ..    8685    8707 ..    8664    8766 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.8
                 HHHHHHHHHHT--GGGESEEEE- CS
  Thiolase_C  26 yaikkvlkkagltvedidlfEin 48 
                  +i+++l++a l  +d+d++E++
  KIR65890.1 321 RVIRQALSNARLAPADVDAVEAH 343
                 57999***************998 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.031
                  HHHHHHHHHHT--GGGESEEEE-- CS
  Thiolase_C   26 yaikkvlkkagltvedidlfEinE 49  
                   +i+++l +aglt++d+d++E++ 
  KIR65890.1 1875 RVIRQALANAGLTTADVDAVEAHG 1898
                  57999****************985 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.2
                  HHHHHHHHHT--GGGESEEEE- CS
  Thiolase_C   27 aikkvlkkagltvedidlfEin 48  
                  +i+++l +a lt +d+d++E++
  KIR65890.1 3650 VIRQALANARLTPADVDAVEAH 3671
                  6788888888888888888877 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 3.3
                  HHHHHHHHHT--GGGESEEEE- CS
  Thiolase_C   27 aikkvlkkagltvedidlfEin 48  
                  +i+++l +a l  +d+d++E++
  KIR65890.1 5406 VIRQALANARLAPADVDAVEAH 5427
                  5667777777777777777765 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.2
                  HHHHHHHHHT--GGGESEEEE- CS
  Thiolase_C   27 aikkvlkkagltvedidlfEin 48  
                  +i+++l +a lt +d+d++E++
  KIR65890.1 7163 VIRQALANARLTPADVDAVEAH 7184
                  6888999999999999999887 PP

  == domain 6  score: 3.8 bits;  conditional E-value: 0.051
                  HHHHHHHHHHT--GGGESEEEE- CS
  Thiolase_C   26 yaikkvlkkagltvedidlfEin 48  
                   +i+++l +aglt +d+d++E++
  KIR65890.1 8685 RVIRQALANAGLTPADVDAIEAH 8707
                  5799*****************98 PP

>> RVT_3  Reverse transcriptase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.5   2.1e+03      25      56 ..    2335    2366 ..    2330    2368 .. 0.84
   2 ?    0.5   0.0      0.59     5e+02      25      53 ..    4092    4120 ..    4087    4123 .. 0.84
   3 ?    0.6   0.0      0.54   4.6e+02      25      56 ..    5838    5869 ..    5831    5872 .. 0.86
   4 ?    3.9   0.0     0.052        44      23      56 ..    7591    7624 ..    7583    7627 .. 0.85
   5 ?    0.8   0.0      0.48   4.1e+02      24      56 ..    9150    9182 ..    9142    9185 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.5
       RVT_3   25 evllagaeklqgkasveeAElqALlrGLqlal 56  
                  ++l+++++  ++ ++++ AE+qA l+ L++a+
  KIR65890.1 2335 RRLAVSHAFHSPLMEPMLAEFQATLETLTFAA 2366
                  5667777778999***************9996 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.59
       RVT_3   25 evllagaeklqgkasveeAElqALlrGLq 53  
                  ++l+++++  ++ ++++ AE++A+l GL 
  KIR65890.1 4092 RRLAVSHAFHSPLMEPMLAEFRAVLDGLS 4120
                  5667777778999***************7 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.54
       RVT_3   25 evllagaeklqgkasveeAElqALlrGLqlal 56  
                  ++l+++++  ++ ++++ AE++A+l+ L++a+
  KIR65890.1 5838 RRLTVSHAFHSPLMEPMLAEFRAVLETLTFAA 5869
                  677888888899*****************996 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.052
       RVT_3   23 nGevllagaeklqgkasveeAElqALlrGLqlal 56  
                  + ++l+++++  ++ ++++ AE++A+l GL +a+
  KIR65890.1 7591 RTRRLTVSHAFHSPLMEPMLAEFRAVLDGLDFAA 7624
                  55778888888999*****************996 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.48
       RVT_3   24 GevllagaeklqgkasveeAElqALlrGLqlal 56  
                   ++l+++++  ++ ++++ AE++A+l+ L++a+
  KIR65890.1 9150 TRRLTVSHAFHSPLMEPMLAEFRAVLETLTFAA 9182
                  5678888888999*****************996 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   1.9   8.8e-06    0.0075       1      87 [.    1215    1310 ..    1215    1313 .. 0.85
   2 ?    5.9   0.2    0.0093         8       1      61 [.    2991    3060 ..    2991    3065 .. 0.81
   3 ?    1.0   3.0       0.3   2.5e+02       1      73 [.    4747    4818 ..    4747    4838 .. 0.61
   4 ?    4.0   1.9     0.036        31       1      62 [.    6502    6572 ..    6502    6591 .. 0.71
   5 ?    7.0   1.4    0.0043       3.7       1      68 [.    8032    8104 ..    8032    8118 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.8e-06
                  EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S......-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHTT-SEEEE---GG.S-HHHHHHHHHH CS
        NmrA    1 IlviGaTGrqGksvvrallkaghkvralvRdt......kselakslkeaGvelv..kgdlddkeslvealkgvdvvfsvtgfy.skeiedgkklvd 87  
                  Ilv+G+TG++G++ +r l+++g +  +l+           ela++l + Gv +   + d+ d+e +++++ g d v   t++   + i + ++lvd
  KIR65890.1 1215 ILVTGGTGAIGAQAARWLAANGAEHLVLTSRRglaaagAAELADELTATGVRVTvaACDMADREQVAALVAGLDDVAPLTAVLhAAGITQLTALVD 1310
                  9*******************99888888866667**999***********96543699**************999988777665666666666666 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0093
                  EEESSTTSHHHHHHHHHHHH.HT-EEEEEES-S......-SHHHHHHHHSTTEE..EES-TT-HHHHHHH CS
        NmrA    1 IlviGaTGrqGksvvrallk.aghkvralvRdt......kselakslkeaGvel..vkgdlddkeslvea 61  
                  +lv+G+TG++G+ ++r+l+  +g +  alv           +la++l   G+ +  ++ d+ d + ++++
  KIR65890.1 2991 VLVTGGTGALGALLARHLVTdRGVDSLALVSRRgpaadgAADLAAELTGLGARVdvLACDVTDPDAVRAL 3060
                  79**************998779*******97666788888999999999997543158888887776665 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.3
                  EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE--- CS
        NmrA    1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtg 73  
                  +l +G+TG++G+ v+++l++a h vr lv  +++ +a++ ++a ve ++g   + e+ +  + ++++v + +g
  KIR65890.1 4747 VLLTGGTGALGALVAEHLVSA-HGVRSLVLVSRRGRAAAGADAVVERLAGLGASVEVSACDVTDAEAVRALVG 4818
                  6889************99974.777777766655555555555555555555555555555555555555444 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.036
                  EEESSTTSHHHHHHHHHHHH.HT-EEEEEES-S......-SHHHHHHHHST..TEEEES-TT-HHHHHHHH CS
        NmrA    1 IlviGaTGrqGksvvrallk.aghkvralvRdt......kselakslkeaG..velvkgdlddkeslveal 62  
                  +lv+G+TG++G+ v+++l++ +g +  +lv           el   l+  G  ve+ + d+ d e +++++
  KIR65890.1 6502 VLVTGGTGALGALVAEHLVSvHGVRSLVLVSRRgaaadgADELTGRLSGLGasVEVAACDVTDAEAVQSLV 6572
                  79****************99555555555543366666666666667766622344477777777776665 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0043
                  EEESSTTSHHHHHHHHHHHHHT-E..EEEEES-S....-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEE CS
        NmrA    1 IlviGaTGrqGksvvrallkaghk..vralvRdt....kselakslkeaGvelvkgdlddkeslvealkgvdvv 68  
                  +lv+G+TG++G++ +r ll++g    v a  R        el+++l+   v +v+ d+ d + +++++ g  + 
  KIR65890.1 8032 VLVTGGTGALGRHTARWLLANGAAevVLASRRGAdapgAAELIEELAG-AVRVVACDVTDAAAVDALVAGLPAL 8104
                  79******************7775225555666655555555555544.36777*********99999886555 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       3.1   2.6e+03       1      51 [.    1217    1266 ..    1217    1281 .. 0.79
   2 ?    5.4   0.1      0.01       8.8       1      48 [.    2993    3040 ..    2993    3067 .. 0.81
   3 ?    5.8   0.2     0.008       6.8       1      45 [.    4749    4793 ..    4749    4823 .. 0.76
   4 ?    5.4   0.2     0.011         9       1      42 [.    6504    6545 ..    6504    6574 .. 0.83
   5 ?    4.3   0.1     0.023        20       1      45 [.    8034    8077 ..    8034    8082 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.1
                     EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HH CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelf 51  
                     +TG+TG +G+   + L  + +e +++l  R    +++++ l +el+ +++ 
     KIR65890.1 1217 VTGGTGAIGAQAARWLAANGAE-HLVLTSRRGLAAAGAAELADELTATGVR 1266
                     7*********988777777766.8999999998889999998988888775 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.01
                     EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHHHHHHHHHHHT-SS CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaksgesaeeRleeelekk 48  
                     +TG+TG LG+ L + L++++  v  ++l+ R    +++++ l +el+  
     KIR65890.1 2993 VTGGTGALGALLARHLVTDRG-VdSLALVSRRGPAADGAADLAAELTGL 3040
                     7****************9986.779999999888888888887777655 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.008
                     EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHHHHHHHHHHHT CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaksgesaeeRleeel 45  
                     lTG+TG LG+ + e L++ +  v  ++l+ R  + +++++ + e l
     KIR65890.1 4749 LTGGTGALGALVAEHLVSAHG-VrSLVLVSRRGRAAAGADAVVERL 4793
                     8****************9997.757777778777777666665555 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.011
                     EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHHHHHHHHH CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaksgesaeeRle 42  
                     +TG+TG LG+ + e L++ +  v  ++l+ R    +++++ l+
     KIR65890.1 6504 VTGGTGALGALVAEHLVSVHG-VrSLVLVSRRGAAADGADELT 6545
                     7******************97.758888888887777777765 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.023
                     EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeel 45  
                     +TG+TG LG++  + LL + ++ +++l  R   ++ +++ l eel
     KIR65890.1 8034 VTGGTGALGRHTARWLLANGAA-EVVLASRRGADAPGAAELIEEL 8077
                     7****************99986.9999988877776666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (10006 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 2.59u 0.32s 00:00:02.90 Elapsed: 00:00:00.62
# Mc/sec: 48597.36
//
Query:       KIR65891.1  [L=132]
Description: hypothetical protein TK50_11385 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1007.57
//
Query:       KIR65892.1  [L=101]
Description: hypothetical protein TK50_11405 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 770.61
//
Query:       KIR65893.1  [L=403]
Description: hypothetical protein TK50_11410 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-11   44.7   4.5    1.3e-11   44.7   4.5    4.3  4  HTH_31    Helix-turn-helix domain
    8.4e-06   25.8   0.0    2.6e-05   24.2   0.0    1.9  1  HTH_3     Helix-turn-helix
    1.5e-05   24.9   0.0    2.4e-05   24.2   0.0    1.4  1  HTH_19    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   4.5   2.2e-15   1.3e-11       2      59 ..       8      65 ..       7      70 .. 0.95
   2 ?   -0.7   0.5      0.32   1.9e+03      36      60 ..     209     232 ..     203     235 .. 0.57
   3 ?   -2.9   0.1       1.5   8.9e+03      17      34 ..     301     330 ..     295     332 .. 0.57
   4 !    4.9   0.4    0.0057        34      38      56 ..     385     402 ..     377     403 .] 0.89

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 2.2e-15
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpa 59
                +G+++++lR r++++q+ +A+rlg s+s++ ++E+G r + +  v+  la +l++dp 
  KIR65893.1  8 IGRRVARLRVRRRMTQQMLADRLGKSKSWVDKVERGVRALDRYTVIQDLAAVLRVDPV 65
                79*****************************************************985 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.32
      HTH_31  36 qGrrgrpspavlealaralgldpae 60 
                 ++ + rp+pa    +a a++  p+ 
  KIR65893.1 209 RALH-RPRPALAVTIAAAHRIAPEA 232
                 4445.56666666666666665554 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.5
      HTH_31  17 qeevAerlg............vsestlsrl 34 
                 + ++A  lg            v +++++rl
  KIR65893.1 301 RVAAAVELGnggeavflhervVGADHWRRL 330
                 344444444666666666666677777765 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0057
      HTH_31  38 rrgrpspavlealaralgl 56 
                 rrg p pa++++la algl
  KIR65893.1 385 RRG-PVPADVARLAAALGL 402
                 777.88***********98 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   4.3e-09   2.6e-05       2      52 ..      13      64 ..      12      67 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 4.3e-09
                HHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSB.HHHHHHHHHHHTSEH CS
       HTH_3  2 kelRkqlglsqeeLAeklGvsrstisriEnGernPs.letlkklakaLgvsl 52
                ++lR  + ++q++LA++lG s+s + + E+G r+ +  ++++ la +L v++
  KIR65893.1 13 ARLRVRRRMTQQMLADRLGKSKSWVDKVERGVRALDrYTVIQDLAAVLRVDP 64
                57999**************************666652788889999999987 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   4.1e-09   2.4e-05       1      61 [.       9      69 ..       9      73 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 4.1e-09
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aelllkiaealgidleyllq 61
                G+r+ ++R  + +tq++la+rlg s+s   + E g +  ++ + +++++a  l +d+ +ll 
  KIR65893.1  9 GRRVARLRVRRRMTQQMLADRLGKSKSWVDKVERGVR-ALDrYTVIQDLAAVLRVDPVALLG 69
                9**********************************99.788566679999999999888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2674.16
//
Query:       KIR65894.1  [L=3473]
Description: beta-ketoacyl synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.4e-175  581.0  13.8    6.8e-91  304.3   0.2    3.8  5  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
     5e-138  460.0   6.0    8.4e-80  268.6   0.7    2.8  2  Acyl_transf_1    Acyl transferase domain
   7.5e-109  361.6   6.2    2.8e-58  196.8   0.2    3.5  2  KR               KR domain
      1e-88  293.3  11.8    1.7e-44  150.6   0.6    3.3  2  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    8.1e-44  150.0   5.5    1.9e-43  148.8   5.5    1.7  1  PS-DH            Polyketide synthase dehydratase
    8.7e-33  113.1   0.0    2.5e-17   63.3   0.0    2.6  2  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    3.9e-26   91.2   0.1    5.8e-12   45.8   0.0    3.3  2  PP-binding       Phosphopantetheine attachment site
    1.5e-19   70.2   0.0    2.6e-08   33.5   0.0    3.4  3  adh_short        short chain dehydrogenase
    2.3e-15   56.7   0.6    8.9e-09   35.2   0.1    2.4  2  Epimerase        NAD dependent epimerase/dehydratase family
    3.1e-12   46.4   8.5      3e-06   26.8   0.1    3.6  3  Thiolase_N       Thiolase, N-terminal domain
    8.4e-12   45.5   6.9    8.4e-12   45.5   6.9    5.2  1  PKS_DE           Polyketide synthase dimerisation element dom
    3.9e-11   42.4   1.3    3.9e-11   42.4   1.3    2.2  1  Docking          Erythronolide synthase docking
    5.1e-08   32.4   0.0    0.00062   19.0   0.0    2.2  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
    9.1e-08   31.9   0.0      2e-05   24.2   0.0    2.2  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    6.4e-05   22.6   4.0      0.027   14.0   0.5    2.4  2  NmrA             NmrA-like family
     0.0013   18.6   3.0       0.33   10.8   0.3    3.4  2  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
     0.0038   17.1   1.4     0.0038   17.1   1.4    6.9  8  NAD_binding_10   NAD(P)H-binding
  ------ inclusion threshold ------
      0.023   14.8   0.0        2.1    8.4   0.0    2.3  2  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
       0.05   12.6   0.1       0.28   10.2   0.0    2.0  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
       0.19   11.4  11.0       0.77    9.4   2.1    3.7  2  SAT              Starter unit:ACP transacylase in aflatoxin b
       0.22   10.6   6.4       0.32   10.0   0.1    2.7  3  RmlD_sub_bind    RmlD substrate binding domain
       0.48    9.6   3.7        8.2    5.5   0.1    2.4  2  NAD_binding_4    Male sterility protein


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.3   0.2   8.3e-94   6.8e-91       2     253 .]      34     284 ..      33     284 .. 0.99
   2 ?   -3.6   0.0       8.1   6.6e+03      95     137 ..     320     362 ..     319     398 .. 0.56
   3 ?   -2.6   0.2         4   3.3e+03     172     172 ..     766     766 ..     685     838 .. 0.53
   4 !  285.2   0.3   5.7e-88   4.7e-85       2     253 .]    1622    1864 ..    1621    1864 .. 0.94
   5 ?   -2.6   0.0       4.1   3.3e+03      96     122 ..    2221    2252 ..    2206    2283 .. 0.63

  Alignments for each domain:
  == domain 1  score: 304.3 bits;  conditional E-value: 8.3e-94
                    --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllle 94 
                    ep+aivG+g+rfPgg+  +e++w+l+ egrdais++padr wd+d+l +p+++ +g++++ +ggfld + +fd+ ffgisprea  mdpqqrllle
     KIR65894.1  34 EPIAIVGIGCRFPGGVRsPEDLWRLVAEGRDAISDFPADRgWDVDRLVHPDPDHPGTSYVGQGGFLDsATEFDAGFFGISPREALGMDPQQRLLLE 129
                    89*************999****************************************************************************** PP

                    HHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt  95 aawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslr 190
                    ++wea+e+ag++p++l+g +vgvf+ ++ +dyaal ++ ++g  v++++  +g+ +a+v++grisy lg++Gp+v+vdtACsSslva+h+a+++lr
     KIR65894.1 130 TSWEAFEHAGIDPATLRGHQVGVFASTTGQDYAALLQSPPPG--VEGYV-LTGT-AASVVSGRISYVLGVEGPAVSVDTACSSSLVALHLACHALR 221
                    *********************************999999888..8****.99*9.***************************************** PP

                    TTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    +ge+ +alaGG++++ tp a++gfs+++ l+ dgr+kaf+ +adG+ +GEGvG+++++rl+da
     KIR65894.1 222 QGECTLALAGGATVMSTPAAFIGFSRQRGLAFDGRVKAFAGAADGTAWGEGVGVLLVERLSDA 284
                    *************************************************************98 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 8.1
                    HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTT CS
  ketoacyl-synt  95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgs 137
                    ++ +al+ a ltp+++d  +   +g  +G  ++ +   a+l  +g+
     KIR65894.1 320 VVLQALAGARLTPADVDAVEahgTGTSLGDPIEAT---ALLATYGQ 362
                    5678999******9997776556777777777744...23333333 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4
                    E CS
  ketoacyl-synt 172 d 172
                     
     KIR65894.1 766 G 766
                    1 PP

  == domain 4  score: 285.2 bits;  conditional E-value: 5.7e-88
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     epvaivGm++r+Pg    +ee+w+l+ +g dai+++p+dr wd+ +         +  +++ ggfl  v +fdp+ffgisprea amdpqqrl 
     KIR65894.1 1622 EPVAIVGMACRYPGDARsPEELWRLVTDGVDAIGDFPTDRgWDTPTP--------DSGYAPAGGFLYdVPAFDPAFFGISPREALAMDPQQRLT 1707
                     89***********98777*******************8665554444........5555666999999************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     lea+we le+agl+p +l+gsr+gvf+G++ + y++  +  ++g   +++  ++ga ++++i+gr++y+lgl+Gp+vtvdtACsSslva+h+a 
     KIR65894.1 1708 LEASWEVLERAGLDPGSLKGSRTGVFVGASTSGYGTGLTEVPEG--TEGYL-MTGA-AHSIISGRVAYTLGLEGPAVTVDTACSSSLVALHLAG 1797
                     **********************************8877777666..79999.9**9.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     ++lr+ge+d+alaGGv+++ tp+++a fs+++ l++dgrck+f+++adG+ ++EGvG+++++rl+da
     KIR65894.1 1798 EALRRGECDLALAGGVTVMATPGTFAEFSRQQGLAADGRCKSFAASADGTGWSEGVGMLLVERLSDA 1864
                     *****************************************************************98 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 4.1
                     HHHHHHHHTS-HHTCTTGG.....EEEEEEES CS
  ketoacyl-synt   96 awealedagltpeeldgsr.....vgvfiGvg 122 
                      +  +e+ag++p+++ g +     +++++G+ 
     KIR65894.1 2221 LAAVWEHAGVSPQAVVGHSqgeigAACVAGIL 2252
                     567899******99977774554444444433 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.2   0.4   9.2e-60   7.5e-57       2     317 ..     613     933 ..     612     935 .. 0.96
   2 !  268.6   0.7     1e-82   8.4e-80       1     316 [.    2149    2463 ..    2149    2466 .. 0.98

  Alignments for each domain:
  == domain 1  score: 193.2 bits;  conditional E-value: 9.2e-60
                    EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTH CS
  Acyl_transf_1   2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlG 93 
                    f+fsGqG+Q aGMG+eL +  ++faa++++   ++ +     +  vl ++       lld+++f+q +L+av++al  ll+s Gv+p++++GHS+G
     KIR65894.1 613 FLFSGQGAQRAGMGRELAAAFPVFAAALDEVCAHLDPRLPKPLKTVLFAEAGtpeaALLDQTVFTQAGLFAVEVALHRLLESWGVTPDVLIGHSIG 708
                    9**********************************************9876667779*************************************** PP

                    HHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH...TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECC CS
  Acyl_transf_1  94 ElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklr.cqddvvgavansprrvvisgsqealrelvervskegvgalvenv 186
                    E+ aa+vag  ++++a+  v+ r+rlm+ l   g+m+av+   a + e l   +  v  a++n+p  vv+sg ++a++el   + ++gv+ ++ +v
     KIR65894.1 709 EVTAAHVAGVFTLADAAALVAARGRLMQALPAGGAMLAVAAdeASVAESLDgLTGTVGIAAVNGPAAVVVSGAEAAIDELADLWTARGVQTSRLKV 804
                    ***************************************99777777778878889999************************************* PP

                    CEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCH.HHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCHH CS
  Acyl_transf_1 187 nvavhspqvdaiadalasaladiaprkpkvakisstsldesserel.saeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlks 281
                    + a+hsp ++++    a+ +a + +r p ++  s ++ d ++++ l s +ywv+ +r++vrfa+ v ++++ +  + +e+ p  +l+a  ++ l  
     KIR65894.1 805 SHAFHSPLMEPMLAGFAAVVAGLDLRAPALPIVSNLTGDLADPEALrSTDYWVRHVREAVRFADGVERLRAHGVGTYLEVGPSGVLTALTREILG- 899
                    *****************************************988874789********************************************9. PP

                    GGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT- CS
  Acyl_transf_1 282 aedvksatlvGklkrdltdflvtflyllakahltgs 317
                      d+ + + v  l+rd  +    +l++la++h++g+
     KIR65894.1 900 -PDADPTAAVALLRRDRPE-PASLLTALAELHVAGV 933
                    .89****************.**************98 PP

  == domain 2  score: 268.6 bits;  conditional E-value: 1e-82
                     EEEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHH CS
  Acyl_transf_1    1 vfvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpeglldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGE 94  
                     vfvf+GqG+Q a M++ L    ++f a +a++ +a+++  +  +  vl+  +e+ l+++++vqp+L av iala++++ +Gv p avvGHS+GE
     KIR65894.1 2149 VFVFPGQGAQSARMAAGLVGRAPVFDARLAECQRALAPFLDVDLVSVLTGDDESWLERVEVVQPVLWAVGIALAAVWEHAGVSPQAVVGHSQGE 2242
                     8********************************************************************************************* PP

                     HHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECC CS
  Acyl_transf_1   95 lAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalvenv 186 
                     + aa vag ls+e+a++ v+lrsr  + l g g+ma+v l  ++++e+l  ++ v +a++n+p++vv+sg+++++++lve ++++g++a+ + v
     KIR65894.1 2243 IGAACVAGILSLEDAAKTVALRSRALAVLRGTGAMASVDLsaDAVTERLHAFPGVGVAAVNGPSTVVVSGPPQPVADLVEACQADGIRARLIPV 2336
                     ****************************************99999************************************************* PP

                     CEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCH CS
  Acyl_transf_1  187 nvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlk 280 
                     ++a+hsp v+++a+ l+++lad+ap++ +v   s+++    +++ + a+yw++nlr++v+f++av+ a++ ++ +fveispH++l++ +   l+
     KIR65894.1 2337 DYASHSPSVQDVAERLRADLADVAPQPGRVRLVSTLTGGWVEPESMTADYWYDNLRQTVQFDAAVRVAVAAGHSTFVEISPHPVLTMPVTAILD 2430
                     ********************************************************************************************** PP

                     HGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT CS
  Acyl_transf_1  281 saedvksatlvGklkrdltdflvtflyllakahltg 316 
                       + + +   +G+l+r+ +d   ++l++la+ah +g
     KIR65894.1 2431 --DAGVTGHTLGSLRRGDDD-PTRLLTNLATAHAIG 2463
                     ..678888899*********.************988 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.9   0.9   1.1e-51   8.7e-49       1     179 [.    1253    1423 ..    1253    1424 .. 0.95
   2 !  196.8   0.2   3.5e-61   2.8e-58       1     179 [.    3034    3212 ..    3034    3213 .. 0.98

  Alignments for each domain:
  == domain 1  score: 165.9 bits;  conditional E-value: 1.1e-51
                  SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------T CS
          KR    1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkll 97  
                  gt+l+tGG+G+LG +++rwl++kgar++vl++R++aa+     l++  ++ g +v+++a+Dv+d+dav+all+++    p ++ v+haAg+ + ++l
  KIR65894.1 1253 GTVLVTGGTGALGGHVTRWLLDKGARRVVLVGRRGAAT---PGLLDGYADDG-RVTAAACDVTDRDAVAALLDTL----PDLTAVVHAAGTDQLTPL 1341
                  89********************************5544...44788877755.9*******************99....599*************** PP

                  TT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   98 eemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  + +t +++ +v+a Kv Ga +Lh +l+d++l  f+lfSSi+g++gsagq++Y a+N+ lDala +rr++gl+a+++ w++w 
  KIR65894.1 1342 TGTTLDEFSHVVAGKVLGALHLHDCLADRPLTAFLLFSSISGVWGSAGQCAYGAGNSLLDALAVHRRDRGLAATAVSWTAWG 1423
                  *********************************************************************************6 PP

  == domain 2  score: 196.8 bits;  conditional E-value: 3.5e-61
                  SEEEEETTTSHHHHHHHHHHH.HHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR    1 gtylitGGlGgLGlelarwla.ekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96  
                  gt+l+tG++G+LG+ +ar+la ++g r+l+l+sRs++  + +++l+ael+ lg+  ++vaaDv+d+da++ ll+e+ a+  p+ Gv+haAgvl+d+ 
  KIR65894.1 3034 GTVLVTGATGALGRLVARHLAtRHGVRRLLLVSRSGPDAPGAADLVAELAGLGVVAQIVAADVTDRDALAVLLDEVPADR-PLVGVVHAAGVLDDGV 3129
                  89******************94578***************************************************9776.**************** PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  l  +t +++++vl pKv++aw+Lhel+e+ +l  fvlfSS++gl+g +gqan+aaaNaflDala++rrs+gl ++s++wg+wa
  KIR65894.1 3130 LPALTPARFDAVLGPKVDAAWHLHELTEKLDLAAFVLFSSASGLFGGPGQANHAAANAFLDALAQHRRSRGLTVTSMAWGPWA 3212
                  **********************************************************************************8 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.5   0.7   4.8e-47   3.9e-44       1     117 [.     292     409 ..     292     410 .. 0.99
   2 !  150.6   0.6   2.1e-47   1.7e-44       1     117 [.    1872    1989 ..    1872    1990 .. 0.99

  Alignments for each domain:
  == domain 1  score: 149.5 bits;  conditional E-value: 4.8e-47
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-GGG CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHleaA 93 
                      +av++gsavn+dga+n+ltapng aq+r++ +ala a+++p+dvd veahgtgt+lgDpiE++al +++g+++  ++pl +gSvKsniGH++aA
       KIR65894.1 292 LAVVRGSAVNQDGASNGLTAPNGPAQQRVVLQALAGARLTPADVDAVEAHGTGTSLGDPIEATALLATYGQGRPaDRPLRLGSVKSNIGHTQAA 385
                      69**********************************************************************99*9****************** PP

                      HHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  94 aGvaelikvvlalkhgvipptlnl 117
                      aGva++ik+vlal+hg++p+tl++
       KIR65894.1 386 AGVAGVIKMVLALRHGQLPATLHV 409
                      ***********************8 PP

  == domain 2  score: 150.6 bits;  conditional E-value: 2.1e-47
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       +av++gsavn+dga+n+ltapng +q+r+i++ala+a+++ +dvd+veahgtgt+lgDpiE++al +++g+++  ++pl +gS+KsniGH++
       KIR65894.1 1872 LAVVRGSAVNQDGASNGLTAPNGPSQQRVIRQALANARLSTSDVDVVEAHGTGTTLGDPIEAQALLATYGQDRPgDRPLLLGSIKSNIGHAQ 1963
                       69***********************************************************************9*9**************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaGva++ikvv+a++hg +p++l++
       KIR65894.1 1964 AAAGVAGVIKVVQAMRHGLVPASLHV 1989
                       *************************8 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.8   5.5   2.4e-46   1.9e-43       1     297 [.    2512    2825 ..    2512    2826 .. 0.90

  Alignments for each domain:
  == domain 1  score: 148.8 bits;  conditional E-value: 2.4e-46
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hpll +  + + d+ ++   r++la +pwL+DH+v g+v+lPg++ +e+a   +r+l     a ++++++++++l +pe+++v++++++ +++++  
  KIR65894.1 2512 HPLLSAVADLPGDEGLLLTGRISLATHPWLADHAVLGTVLLPGTALVELASFSGRHLD----AAHVTELVLEAPLAVPEEGNVDLRVRVGAAGEDGL 2604
                  9***8888999**********************************************9....888***************************88887 PP

                  ....EEEEEEE-SS-TT................EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEE CS
       PS-DH   98 rawvefeifSregggee...............wtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralw 179 
                       ++++S  g+++                w++ha+G ++ ++  +     ++  +a++++p+ +++++ +++Y +la++g++yGp F++lra+w
  KIR65894.1 2605 ---RPVSVHSSVGEAHPsmgdggdqpgaavrqWQRHAHGLLAPTR--P-----VAVAPAAAWPPPGAEPIDLDALYPHLAEQGYHYGPVFRALRAAW 2691
                  ...45666666666665666677779****************553..3.....4466778899999999**************************** PP

                  EETTEEEEEE---GGGSSTTTT-SB-HHHHHHHHHHG..GG........................----------EEEEEEEEEEE-S...-BTS-- CS
       PS-DH  180 rgdgealaelrlpeelaggesayvlhPallDaalQllaaal........................saeaekadaaylPvaierlrvyrpssaageel 252 
                  r  ++ lae++l++++ g+++++ +hPallDaal++++a +                        s++ ++  ++ lP+++  +++ + +    +  
  KIR65894.1 2692 RHGDDLLAEVSLDADAPGDAAPFTVHPALLDAALHAIGASAlgragtdgetaagtdadsternagSDVGSRGAQPGLPFSWTGVAIAP-T----RAR 2783
                  ***********************************7777777**********************988999****************96.2....235 PP

                  EEEEEE----SS-EEEEEEEE-SS-BEEEEEESEEEEE--XXXXX CS
       PS-DH  253 wvharleeegarsivadltlvdedGrvvaeieglrlrrvereals 297 
                  + ++rl+++g    ++ +t++d  G +va+++ l lr++++++ls
  KIR65894.1 2784 ELRVRLTAAG---GSVAATVTDTGGVPVASLDALVLRPITADQLS 2825
                  6666666665...4799999*******************999875 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   3.3e-15   2.7e-12       1      89 [.     412     524 ..     412     532 .. 0.90
   2 !   63.3   0.0   3.1e-20   2.5e-17       1     111 [.    1992    2112 ..    1992    2113 .. 0.93

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 3.3e-15
  KAsynt_C_assoc   1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk.....................eeslprLlvlsgrt 70 
                     P p+++ ++ g + + te+ pwp g     +gv+sfG++G+n+Hvi+++++ e+++ ++                       +     ++ls+r+
      KIR65894.1 412 PTPHVD-WTAGAVSLLTEAQPWPAGErprrAGVSSFGMSGTNAHVIIEEAPAETPDAAPAapgtppaeaapatrpagpapvATAGLVPVLLSARD 505
                     99****.****************99999***********************777777777778888999999999999999899999999***** PP

  KAsynt_C_assoc  71 eeaveallekleehlldae 89 
                     ++a++a++++ +++l+ ++
      KIR65894.1 506 AAALTAQAARWADWLDADA 524
                     **********999976654 PP

  == domain 2  score: 63.3 bits;  conditional E-value: 3.1e-20
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk.....eeslprLlvlsgrteeaveallekleeh 84  
                      P+p+i+ ++ g + +vte+ pwp       ++v+sfG++G+n+Hvi+++++++ ++++++      +    ++++s+r+++a+++++++l++h
      KIR65894.1 1992 PSPHID-WSAGAVDLVTEARPWPAVDrprrAAVSSFGMSGTNAHVIVEQPEEPADAPAEDpapglVDADVLVWPVSARSAAALRDQAARLANH 2083
                      99****.***************99888999*********************9999999998999888888999******************** PP

  KAsynt_C_assoc   85 lldaellsllneilseeisr..lpyRGya 111 
                       +d++ l+ ++ + s +++r  +++R+ +
      KIR65894.1 2084 VRDRDALDPAALAWSLATTRatFDHRASV 2112
                      ********999999999998889999765 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   7.1e-15   5.8e-12       8      67 .]    1540    1599 ..    1533    1599 .. 0.92
   2 !   41.8   0.0   1.3e-13     1e-10       2      67 .]    3321    3387 ..    3320    3387 .. 0.95

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 7.1e-15
  PP-binding    8 aevlgvpleeid.pdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  a+vlg ++ + d    ++ dlG+DSl+av+l  +l+e  g+++p++ +f+hpt+a+la++l
  KIR65894.1 1540 ARVLGHATAD-DlRGRPFADLGFDSLTAVDLRTRLNEVTGLRLPSTLVFDHPTPADLARHL 1599
                  7899998888.557999******************************************97 PP

  == domain 2  score: 41.8 bits;  conditional E-value: 1.3e-13
  PP-binding    2 klrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   +r+ +a vlg  +l +id+d  + +lG+DSl+ave+ ++l ++ g+++p++ +++ pt  +l+ yl
  KIR65894.1 3321 LVRTHAAAVLGYaSLRDIDADKGFVELGFDSLTAVEFRNRLTAATGLRLPSTLVYDRPTTTALVGYL 3387
                  689999*****9778889**********************************************996 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   3.2e-11   2.6e-08       2     152 ..    1254    1396 ..    1253    1419 .. 0.89
   2 ?    0.3   0.0      0.49     4e+02      23      76 ..    2303    2357 ..    2298    2360 .. 0.86
   3 !   31.5   0.0   1.4e-10   1.1e-07       2     180 ..    3035    3209 ..    3034    3214 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 3.2e-11
                  EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCS CS
   adh_short    2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsels 97  
                  +vlvtG+++ +G  + + l+ +Ga+ vv v+r+ ++   +++   +   +++a+++Dvtdr++v al+++       l ++v+ AG  + +p   ++
  KIR65894.1 1254 TVLVTGGTGALGGHVTRWLLDKGARRVVlVGRRGAATPGLLDGYAD-DGRVTAAACDVTDRDAVAALLDTL----PDLTAVVHAAGTDQLTPLTGTT 1345
                  79**********************9877799*99999999999887.589************999999887....99******************** PP

                  HHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHH CS
   adh_short   98 eeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAs 152 
                   +e+  v++  + g+++l   ++    ++   +    sS+ g  ++ag++aY+A 
  KIR65894.1 1346 LDEFSHVVAGKVLGALHLHDCLA----DRPLTAFLLFSSISGVWGSAGQCAYGAG 1396
                  ********999999999877655....5578899999***************995 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.49
                  TT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTT.SHHHHHHHHHHHHHHHS CS
   adh_short   23 eGakvvvvdrseekleevakelkeegakalaiqvDvt.dreevealvekavkklg 76  
                  +G ++vvv+  +++++ +++ ++++g +a  i+vD + ++ +v+++ e+ +++l 
  KIR65894.1 2303 NGPSTVVVSGPPQPVADLVEACQADGIRARLIPVDYAsHSPSVQDVAERLRADLA 2357
                  688889999999************************9667789999988887765 PP

  == domain 3  score: 31.5 bits;  conditional E-value: 1.4e-10
                  EEEEESTTSHHHHHHHHHHHH.TT-EEEE.EESCHHH...HHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    2 vvlvtGassGIGraiakelak.eGakvvv.vdrseek...leevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                  +vlvtGa++ +Gr +a++la+  G++ ++ v+rs  +   ++ +++el  +g  a ++++Dvtdr+++  l++++ ++  +l  +v+ AG+  +g  
  KIR65894.1 3035 TVLVTGATGALGRLVARHLATrHGVRRLLlVSRSGPDapgAADLVAELAGLGVVAQIVAADVTDRDALAVLLDEVPAD-RPLVGVVHAAGVLDDGVL 3130
                  79*****************962688887779998766112566777777779***********************877.6788899*********** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEES CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPG 180 
                    l+ +++++v+   + ++ +l ++  +++     ++ v  sS  g+ + +g+a  +A+    +++ ++la+  +++g +v+++a G
  KIR65894.1 3131 PALTPARFDAVLGPKVDAAWHLHELT-EKL---DLAAFVLFSSASGLFGGPGQANHAAA----NAFLDALAQHRRSRGLTVTSMAWG 3209
                  ******************99987764.443...58999***************998876....556666677777777777777665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.1   1.1e-11   8.9e-09       1     119 [.    1255    1385 ..    1255    1397 .. 0.81
   2 !   19.6   0.1   6.2e-07    0.0005       1      74 [.    3036    3124 ..    3036    3184 .. 0.71

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.1e-11
                  EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC.....EEEE--TT-HHHHHHHHHHH.T-SEEEE--S.---HHHHHHSHHHHHH CS
   Epimerase    1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledl.....elveldltdrsalerlfkee.qpdavihlAa.vggvaassedpadfie 89  
                  +lVtG+tG +G ++++ ll+kg + v+ + r+  a +  ++  +     +   +d+tdr+a+++l+++  + +av+h+A+  +  + + ++  +f +
  KIR65894.1 1255 VLVTGGTGALGGHVTRWLLDKGARrVVLVGRRGAATPGLLDGYAddgrvTAAACDVTDRDAVAALLDTLpDLTAVVHAAGtDQLTPLTGTTLDEFSH 1351
                  79********************777999999966666555554499*99******************************987777666666666555 PP

                  ...HHTHHHHHHHHHHHHHTCTEEEEEEE.GGGG CS
   Epimerase   90 ...knlqgtlnlleaarkagvkrllflsS.sevY 119 
                       + g+l+l +++ ++ +  +l +sS s v 
  KIR65894.1 1352 vvaGKVLGALHLHDCLADRPLTAFLLFSSiSGVW 1385
                  2226788888888888899888888888855555 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 6.2e-07
                  EEEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTTTCHHCHHC...........EEEE--TT-HHHHHHHHHHHT-S....EEEE--S- CS
   Epimerase    1 ilVtGatGfiGsalvkallekg.ye.vigldrlssasntarledl...........elveldltdrsalerlfkeeqpd....avihlAav 74  
                  +lVtGatG +G+ ++++l++++ ++ ++ ++r   + + a++  l           ++v +d+tdr+al+ l++e+ +d     v+h+A+v
  KIR65894.1 3036 VLVTGATGALGRLVARHLATRHgVRrLLLVSRSGPDAPGAAD--LvaelaglgvvaQIVAADVTDRDALAVLLDEVPADrplvGVVHAAGV 3124
                  79****************999886647777776444443333..23689******************999999998887444458888873 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.5   6.3e-08   5.1e-05      51     117 ..     174     238 ..     172     249 .. 0.88
   2 !   26.8   0.1   3.7e-09     3e-06      53     118 ..    1756    1819 ..    1745    1841 .. 0.85
   3 ?   -2.7   0.2       3.7     3e+03      81     122 ..    2243    2284 ..    2235    2292 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 6.3e-08
                 EHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N  51 GnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117
                 G vl++ + + ++  ++  +g+  e pav v+ +csS+l a++la+ +++ ge+  ++agG+  ms+
  KIR65894.1 174 GYVLTGTAASVVSGRISYVLGV--EGPAVSVDTACSSSLVALHLACHALRQGECTLALAGGATVMST 238
                 5677777777777777778888..89***************************************96 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 3.7e-09
                  SSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS CS
  Thiolase_N   53 vlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsna 118 
                   +++++ ++i+  +a  +g+  e pavtv+ +csS+l a++la ++++ ge+d ++agGv  m + 
  KIR65894.1 1756 LMTGAAHSIISGRVAYTLGL--EGPAVTVDTACSSSLVALHLAGEALRRGECDLALAGGVTVMATP 1819
                  55666777788888999999..99************************************999865 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.7
                  EEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS-EEE CS
  Thiolase_N   81 vnkvcsSglkavalaaqsiaageadvvvagGvEsmsnaptae 122 
                  +  +c  g+ ++ +aa+ +a  +   +v+ G+  m  ++ ++
  KIR65894.1 2243 IGAACVAGILSLEDAAKTVALRSRALAVLRGTGAMASVDLSA 2284
                  6789*****************************999887665 PP

>> PKS_DE  Polyketide synthase dimerisation element domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   6.9     1e-14   8.4e-12       1      44 [.     979    1028 ..     979    1028 .. 0.89

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 1e-14
      PKS_DE    1 DaaFWaaVereDlaaLaatLgl....dada....sLsavLPaLsaWRrrrre 44  
                  DaaFWaaVer+D++aL ++Lg+    d  a    +L ++LP+L+aWRr+r++
  KIR65894.1  979 DAAFWAAVERADVDALRDQLGTapagD--AdpvdTLLPALPVLAAWRRDRHD 1028
                  9*********************87542..256889**************985 PP

>> Docking  Erythronolide synthase docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   1.3   4.8e-14   3.9e-11       1      26 []       2      27 ..       2      27 .. 0.96

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 4.8e-14
     Docking  1 anEeKLRdYLKRvTaDLrqtRrRLrE 26
                a+E+ LR+YLK+vTaDL+qt+r L E
  KIR65894.1  2 ATEDTLREYLKWVTADLHQTKRKLGE 27
                79*********************977 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   7.6e-07   0.00062       1     127 [.    1255    1379 ..    1255    1418 .. 0.80
   2 !   11.3   0.0   0.00017      0.14       1      85 [.    3036    3122 ..    3036    3168 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7.6e-07
                       EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT...T-SEEEE------H. CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel.kvdvvfhaAAlKhV. 90  
                       vlvtG++G++G +++r +l+k +++++l+ r   +   + + +    ++ ++    ++  +dv+d++ ++ +l++l +  +v+haA + ++ 
       KIR65894.1 1255 VLVTGGTGALGGHVTRWLLDKGARRVVLVGRRGAATPGLLDGYA---DDGRV----TAAACDVTDRDAVAALLDTLpDLTAVVHAAGTDQLt 1339
                       89*********************************999998873...34334....4669*************97647889*****998864 PP

                       HHHHH...SHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEE CS
  Polysacc_synt_2   91 Plvee...npleaiktNvlgtenvieaaieagvkkvvliS 127 
                       Pl  +   +  +++   vlg+ ++ ++  +   ++++l S
       KIR65894.1 1340 PLTGTtldEFSHVVAGKVLGALHLHDCLADRPLTAFLLFS 1379
                       6665511134456777788888777777777777776666 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00017
                       EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SE....EEE-- CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdv....vfhaA 85  
                       vlvtGa+G++G+ + r+++++  +++++l++r+       ++ + +el+   l v    v +dv+d++ l+ +l+e+  d     v+haA
       KIR65894.1 3036 VLVTGATGALGRLVARHLATRhGVRRLLLVSRSGPDAPGAADLV-AELAG--LGVVAQIVAADVTDRDALAVLLDEVPADRplvgVVHAA 3122
                       89***************998879*********999888777655.45555..44555678899999999998888766553223366666 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   2.5e-08     2e-05       1     135 [.    1256    1387 ..    1256    1393 .. 0.75
   2 ?    5.5   0.0     0.012       9.4       1      76 [.    3037    3111 ..    3037    3120 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.5e-08
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH.T-SEEEE--S---....HH CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev.qpdevynLAAqsh....Vd 89  
                     L+TG++G  G +++++Ll+kg + +++v r  + + g ++  a+      +++++   +D+tD++++  ll+   + ++v++ A+        +
     KIR65894.1 1256 LVTGGTGALGGHVTRWLLDKGARRVVLVGRRGAATPGLLDGYAD------DGRVTAAACDVTDRDAVAALLDTLpDLTAVVHAAGTDQltplTG 1343
                     9**********************999999999999999998765......46899*****************9878999**9998765111134 PP

                     HHTTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S CS
  GDP_Man_Dehyd   90 vsfekPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGk 135 
                     + +++   ++  +vlG+l+L ++  +  l+  + ++++S s v+G+
     KIR65894.1 1344 TTLDEFSHVVAGKVLGALHLHDCLADRPLT--AFLLFSSISGVWGS 1387
                     455555555666666666666666554442..33444555666665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.012
                     EEETTTSHHHHHHHHHHHHC.T-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT- CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlek.gyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqp 76  
                     L+TG +G  G  +a++L ++ g +   +v rs   + g  + +a+     l    +++ +D+tD+++l  ll+ev  
     KIR65894.1 3037 LVTGATGALGRLVARHLATRhGVRRLLLVSRSGPDAPGAADLVAELA--GLGVVAQIVAADVTDRDALAVLLDEVPA 3111
                     9****************987578888888888777777777766554..4667899*************99999855 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.2   0.00091      0.75       1      29 [.    1255    1283 ..    1255    1333 .. 0.73
   2 !   14.0   0.5   3.3e-05     0.027       1      65 [.    3036    3109 ..    3036    3111 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00091
                  EEESSTTSHHHHHHHHHHHHHT-EEEEEE CS
        NmrA    1 IlviGaTGrqGksvvrallkaghkvralv 29  
                  +lv+G+TG++G++v+r ll++g +  +lv
  KIR65894.1 1255 VLVTGGTGALGGHVTRWLLDKGARRVVLV 1283
                  79********************9988887 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 3.3e-05
                  EEESSTTSHHHHHHHHHHHH.HT-EEEEEES-S......-SHHHHHHHHSTT..EEEES-TT-HHHHHHHHTT- CS
        NmrA    1 IlviGaTGrqGksvvrallk.aghkvralvRdt......kselakslkeaGv..elvkgdlddkeslvealkgv 65  
                  +lv+GaTG++G+ v+r+l+  +g +   lv  +        +l+++l+  Gv  ++v++d+ d++ l+ +l++v
  KIR65894.1 3036 VLVTGATGALGRLVARHLATrHGVRRLLLVSRSgpdapgAADLVAELAGLGVvaQIVAADVTDRDALAVLLDEV 3109
                  79**************9987466666666655589****************844589**********9999876 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.3   0.00041      0.33       3      39 ..     202     238 ..     200     251 .. 0.93
   2 ?    6.2   0.1     0.012       9.4       3      31 ..    1782    1810 ..    1780    1823 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00041
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGG CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlsk 39 
                  + +aCs+ ++al++A +++++g++  +L  ga ++s 
   KIR65894.1 202 VDTACSSSLVALHLACHALRQGECTLALAGGATVMST 238
                  578*************************999999985 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.012
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEE CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLv 31  
                   + +aCs+ ++al++A ++++ g++  +L 
   KIR65894.1 1782 VDTACSSSLVALHLAGEALRRGECDLALA 1810
                   5689******************9998886 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.2      0.83   6.8e+02       6      46 ..     273     314 ..     271     346 .. 0.75
   2 ?   -3.3   0.2       8.9   7.2e+03      23      92 ..    1087    1152 ..    1075    1173 .. 0.68
   3 !   17.1   1.4   4.7e-06    0.0038       1      72 [.    1259    1337 ..    1259    1366 .. 0.83
   4 ?    1.8   0.2      0.23   1.9e+02       5      59 ..    1852    1906 ..    1848    1978 .. 0.75
   5 ?    0.5   1.0      0.58   4.7e+02       4     105 ..    2241    2345 ..    2239    2359 .. 0.63
   6 ?   -2.8   0.1       6.2   5.1e+03      53      83 ..    2885    2916 ..    2876    2947 .. 0.67
   7 !    7.2   2.0    0.0053       4.4       1      59 [.    3040    3107 ..    3040    3127 .. 0.70
   8 ?    0.5   0.0      0.61     5e+02      54     102 ..    3155    3209 ..    3133    3225 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.83
                     HHHHHHHHHHHC-..T-EEEEEETTHHHCHHHHCTTTCEEEE- CS
  NAD_binding_10   6 vGrllvkellarg..ghevtalvRnpeklaeleaeeglevveg 46 
                     vG llv++l +++  gh+v a+vR ++  ++  a++gl++  g
      KIR65894.1 273 VGVLLVERLSDARrnGHPVLAVVRGSAVNQDG-ASNGLTAPNG 314
                     899999999999889*********87766654.3456665555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8.9
                      EEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHHHHHHHHHHHHCT--E CS
  NAD_binding_10   23 talvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeegaknivdaakeagvkR 92  
                      ++ + + +++a l  +++l++  gd+  v+ + + ++g+da + a+ g++  + ++  +++a+   +v  
      KIR65894.1 1087 RVGADDLDRAA-L--ADRLRAAIGDAP-VAGVLHLVAGQDALLPAHPGTSVAAATTLVLLQALTDLDVAA 1152
                      44455555655.4..468888889887.889999999***999998777666666666666666666555 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 4.7e-06
                      TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH....HHHCTTTCEEEE--TT-CCHHHHHHT...T-SEEEES---TC CS
  NAD_binding_10    1 GAtGkvGrllvkellargghevtalvRnpekla....eleaeeglevvegdvtdvedlaealk...gadaVvsalgggg 72  
                      G+tG  G ++++ ll++g  +v+++ R+ + ++     ++++ ++++   dvtd +++a+ l+   +  aVv a+g+++
      KIR65894.1 1259 GGTGALGGHVTRWLLDKGARRVVLVGRRGAATPglldGYADDGRVTAAACDVTDRDAVAALLDtlpDLTAVVHAAGTDQ 1337
                      9*****************999****9*988877333245689**************99999986667889999998765 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.23
                      HHHHHHHHHHHHC-..T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHT CS
  NAD_binding_10    5 kvGrllvkellarg..ghevtalvRnpeklaeleaeeglevvegdvtdvedlaealk 59  
                      +vG llv++l +++  gh+v a+vR ++  ++  a++gl++  g  +++  +++al+
      KIR65894.1 1852 GVGMLLVERLSDARrnGHRVLAVVRGSAVNQDG-ASNGLTAPNG-PSQQRVIRQALA 1906
                      699*******999999*********88877764.4577777776.344555666665 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.58
                      SHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEE.EES---TCC.....HHHHHHHHHHHHHHCT- CS
  NAD_binding_10    4 GkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaV.vsalggggk.....deegaknivdaakeagv 90  
                      G +G + v+ +l+ ++ + t+  R +  la l+ + ++  v+++   +++++e l     V v+a++g ++       + ++ +v+a+++ g+
      KIR65894.1 2241 GEIGAACVAGILSLEDAAKTVALR-SRALAVLRGTGAMASVDLS---ADAVTERLHAFPGVgVAAVNGPSTvvvsgPPQPVADLVEACQADGI 2329
                      788888888888886444444444.4444557765665566554...566666666666663444444444544444444************9 PP

                      -.EEEEEEETTTTSGC CS
  NAD_binding_10   91 k.Rfvlvsaigvgdev 105 
                      + R++ v ++    +v
      KIR65894.1 2330 RaRLIPVDYASHSPSV 2345
                      5499999887766554 PP

  == domain 6  score: -2.8 bits;  conditional E-value: 6.2
                      HHHHHHTT-SEEEES---TCCHHHH.HHHHHH CS
  NAD_binding_10   53 dlaealkgadaVvsalggggkdeeg.aknivd 83  
                      ++a   +  daV++a+ g++ de g a+++  
      KIR65894.1 2885 AVAGGAARPDAVLAAVTGQRADEPGpARAAHL 2916
                      23333334589999998888887776333333 PP

  == domain 7  score: 7.2 bits;  conditional E-value: 0.0053
                      TTTSHHHHHHHHHHHHC-T-EEEEEE.TT....HHHCH...HHHCT.TTCEEEE--TT-CCHHHHHHT CS
  NAD_binding_10    1 GAtGkvGrllvkellargghevtalv.Rn....pekla...eleae.eglevvegdvtdvedlaealk 59  
                      GAtG  Grl++++l+ r+g++  +lv R+    p  ++   el+     +++v +dvtd ++la  l+
      KIR65894.1 3040 GATGALGRLVARHLATRHGVRRLLLVsRSgpdaPGAADlvaELAGLgVVAQIVAADVTDRDALAVLLD 3107
                      9****************977655555155544322222222343221355788899999999987765 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 0.61
                      HHHHHTT-SEEEES-......--TCCHHHHHHHHHHHHHHCT--EEEEEEETTTT CS
  NAD_binding_10   54 laealkgadaVvsal......ggggkdeegaknivdaakeagvkRfvlvsaigvg 102 
                      l+e l+ a  V+++       g+g+ ++ +a++ +da+ ++  +R ++v+++  g
      KIR65894.1 3155 LTEKLDLAAFVLFSSasglfgGPGQANHAAANAFLDALAQHRRSRGLTVTSMAWG 3209
                      5555555565644444777744444467779999*****************9876 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.072        58      13      46 ..    1253    1287 ..    1246    1312 .. 0.84
   2 ?    8.4   0.0    0.0026       2.1       3      47 ..    3024    3070 ..    3023    3091 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.072
                    -EEEEE.S-SHHHHHHHHHHHCCT-CEEEEEESSH CS
  Shikimate_DH   13 kkvlli.GaGemaelvakhLlakgvkkvvvaNRtl 46  
                     +vl+  G+G ++  v++ Ll+kg+++vv ++R  
    KIR65894.1 1253 GTVLVTgGTGALGGHVTRWLLDKGARRVVLVGRRG 1287
                    566666369***********************975 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0026
                    HHHHHS..TT-EEEEES-.SHHHHHHHHHHHCC.T-CEEEEEESSHH CS
  Shikimate_DH    3 akkkleslkekkvlliGa.GemaelvakhLlak.gvkkvvvaNRtle 47  
                    a+  +++l+  +vl+ Ga G +++lva+hL+++ gv++++ + R+  
    KIR65894.1 3024 AEAAAPDLSAGTVLVTGAtGALGRLVARHLATRhGVRRLLLVSRSGP 3070
                    5667789999*******88***********98769*******99854 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00034      0.28       1      80 [.    1256    1339 ..    1256    1395 .. 0.76
   2 ?   -0.5   0.0      0.59   4.8e+02       1      68 [.    3037    3110 ..    3037    3130 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00034
   3Beta_HSD    1 vvtGgaGFlGralvkeLvrleelkevrvlD..lrespelleelskvnvkkviegDvtdkdkleeale...gvdvvihlaslvdva 80  
                  +vtGg+G lG ++ + L++ +  + v  +    +  p ll+     ++ +   +Dvtd d + + l+   +  +v+h a+  +++
  KIR65894.1 1256 LVTGGTGALGGHVTRWLLDKGA-RRVVLVGrrGAATPGLLDGYADDGRVTAAACDVTDRDAVAALLDtlpDLTAVVHAAGTDQLT 1339
                  69*******************6.55555552345778899********************9988766333789999999876554 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.59
   3Beta_HSD    1 vvtGgaGFlGralvkeLvrleelkevrvlD.....lrespelleelskvnvkk.viegDvtdkdkleealegvd 68  
                  +vtG++G lGr + ++L  ++ ++ +  +            l  el  ++v   ++ +Dvtd d l   l++v 
  KIR65894.1 3037 LVTGATGALGRLVARHLATRHGVRRLLLVSrsgpdAPGAADLVAELAGLGVVAqIVAADVTDRDALAVLLDEVP 3110
                  69*********999999998877666554323222445555556666666665688889999888888877765 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   1.8       0.2   1.6e+02     104     219 ..     699     789 ..     673     810 .. 0.39
   2 ?    9.4   2.1   0.00094      0.77     194     239 ..    2295    2340 ..    2219    2341 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.2
         SAT 104 stylvGlCtGllaAaavacskslseLvplaveavrvafrlGlevarvaarleegsssssesWslavtglseeelekalaefneekglppasrvyisavs 202
                 + +l+G+++G + Aa va   +l++               +++va++ + ++   ++  +  +lav+ ++e+++++ l+ ++ + g        i+av+
  KIR65894.1 699 PDVLIGHSIGEVTAAHVAGVFTLADA--------------AALVAARGRLMQ-ALPA--GGAMLAVA-ADEASVAESLDGLTGTVG--------IAAVN 771
                 55677777777777777655444432..............222222222222.1111..11222222.233333333333333333........33333 PP

         SAT 203 sss.vtisGpPstleall 219
                 +++ v++sG   ++++l 
  KIR65894.1 772 GPAaVVVSGAEAAIDELA 789
                 333333333333333333 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00094
         SAT  194 srvyisavssss.vtisGpPstleallksskakkkkkksklpiyapy 239 
                    v ++av+++s v++sGpP+ +++l++ ++a+  + +  +p+  + 
  KIR65894.1 2295 PGVGVAAVNGPStVVVSGPPQPVADLVEACQADGIRAR-LIPVDYAS 2340
                  557799***9998*******************999987.68876555 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00039      0.32       2      59 ..    1254    1333 ..    1253    1338 .. 0.87
   2 ?   -3.4   0.2       4.8   3.9e+03      66      90 ..    1524    1548 ..    1520    1549 .. 0.88
   3 ?    3.6   0.1     0.038        31       2      53 ..    3035    3112 ..    3034    3125 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00039
                     EEEEESTTSHHHHHHHHHCTTTSEEEEEE.-TT....................T--TTSHHHHHHHHHHH--S..EEEE-- CS
  RmlD_sub_bind    2 kilvtGanGqlGseLakqlaeeglevlal.tre....................eldltdaeavaellkeakpd..vvvnaA 59  
                     ++lvtG++G+lG ++++ l  +g+  + l +r+                    ++d+td++ava+ll+   pd  +vv+aA
     KIR65894.1 1254 TVLVTGGTGALGGHVTRWLLDKGARRVVLvGRRgaatpglldgyaddgrvtaaACDVTDRDAVAALLDTL-PDltAVVHAA 1333
                     58***************99999987666647779********************************9985.4434899998 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.8
                     HHHHSHHHHHHHHTHHHHHHHHHHH CS
  RmlD_sub_bind   66 kaEseeeaayavnaeavealAeaaa 90  
                     +aE+e+e+ + vna+ ++ l +a+a
     KIR65894.1 1524 EAEQERELLAIVNAQTARVLGHATA 1548
                     79***************99998875 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.038
                     EEEEESTTSHHHHHHHHHCTTTS.EEEEEE.-TT........................T--TTSHHHHHHHHHHH--S CS
  RmlD_sub_bind    2 kilvtGanGqlGseLakqlaeeg.levlal.tre........................eldltdaeavaellkeakpd 53  
                     ++lvtGa+G+lG+ +a+ la ++ +  l l +r+                        ++d+td++a+a ll+e+  d
     KIR65894.1 3035 TVLVTGATGALGRLVARHLATRHgVRRLLLvSRSgpdapgaadlvaelaglgvvaqivAADVTDRDALAVLLDEVPAD 3112
                     58*************999988651443333255578888888888888888888888888888888888877776555 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.6     0.022        18       1      30 [.    1257    1285 ..    1257    1291 .. 0.84
   2 ?    5.5   0.1      0.01       8.2       1      41 [.    3038    3078 ..    3038    3099 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.022
                     EE-TTSHHHHHHHHHHHHHS-.TEEEEEE- CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpevkiyllvR 30  
                     +TG+TG LG ++ + LL++ ++ +++l+ R
     KIR65894.1 1257 VTGGTGALGGHVTRWLLDKGAR-RVVLVGR 1285
                     7****************99886.7766555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.01
                     EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHHHHHHHH CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaksgesaeeRl 41  
                     +TGaTG LG+ + + L +++  v ++ l+ R+  ++ +++ l
     KIR65894.1 3038 VTGATGALGRLVARHLATRHG-VrRLLLVSRSGPDAPGAADL 3078
                     7********998888888886.76888888877666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 1.40u 0.32s 00:00:01.72 Elapsed: 00:00:00.52
# Mc/sec: 20242.66
//
Query:       KIR65895.1  [L=4998]
Description: acyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.2e-279  919.8  13.2    1.3e-95  319.8   0.1    5.7  7  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
   7.8e-194  643.3   8.1    6.4e-87  292.0   0.1    3.7  3  Acyl_transf_1    Acyl transferase domain
   1.2e-161  533.5  25.4    2.5e-57  193.7   2.4    4.8  4  KR               KR domain
   2.7e-135  443.5  10.1    1.6e-45  153.9   0.2    4.1  3  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    5.1e-56  190.1   9.3    5.1e-56  190.1   9.3    2.6  2  PS-DH            Polyketide synthase dehydratase
    1.8e-50  170.1   0.0    5.7e-17   62.2   0.0    3.6  3  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    8.2e-38  128.6   0.0    5.4e-12   45.9   0.0    4.1  3  PP-binding       Phosphopantetheine attachment site
    3.7e-34  117.9  15.9    2.7e-13   49.8   0.7    4.0  4  adh_short        short chain dehydrogenase
    2.3e-24   86.2   4.2    6.4e-08   32.3   0.1    3.8  3  Thiolase_N       Thiolase, N-terminal domain
    1.4e-22   80.5  17.8      8e-10   38.7   2.7    3.9  3  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    3.3e-20   72.4  19.1    1.9e-12   47.5   7.7    8.7  5  PKS_DE           Polyketide synthase dimerisation element dom
    1.4e-16   60.7  10.3    1.5e-05   24.6   0.7    3.4  3  Epimerase        NAD dependent epimerase/dehydratase family
    6.5e-15   55.4   0.0    0.00022   20.8   0.0    3.2  3  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.2e-13   50.8   0.0    5.6e-05   22.4   0.0    3.2  3  Polysacc_synt_2  Polysaccharide biosynthesis protein
    1.3e-08   34.3   4.2    1.3e-08   34.3   4.2    2.3  1  Docking          Erythronolide synthase docking
    0.00012   22.4   8.5      0.097   12.9   0.2    3.8  3  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.003   17.3  14.4        2.5    7.7   0.5    5.8  4  SAT              Starter unit:ACP transacylase in aflatoxin b
  ------ inclusion threshold ------
      0.026   14.1  13.5        2.2    7.8   1.1    3.7  3  NmrA             NmrA-like family
       0.26   11.2  16.7       0.47   10.3   0.2    5.4  4  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
       0.73    9.5   3.6         87    2.9   0.1    3.6  3  GBP_PSP          Paralytic/GBP/PSP peptide
        2.8    7.0  11.5        2.8    7.0   2.3    3.7  4  RmlD_sub_bind    RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.6   0.0   2.3e-92   1.9e-89       2     253 .]      34     284 ..      33     284 .. 0.98
   2 ?   -2.1   0.1       2.6   2.3e+03      95     145 ..     320     371 ..     319     394 .. 0.66
   3 !  319.8   0.1   1.5e-98   1.3e-95       2     253 .]    1810    2060 ..    1809    2060 .. 0.97
   4 ?   -0.4   0.0       0.8   6.8e+02      95     143 ..    2096    2145 ..    2094    2177 .. 0.62
   5 !  304.5   0.8   7.3e-94   6.2e-91       2     253 .]    3352    3602 ..    3351    3602 .. 0.98
   6 ?   -3.9   0.0       9.8   8.3e+03      95     137 ..    3638    3680 ..    3637    3705 .. 0.64
   7 ?   -3.2   0.0       5.9     5e+03      55      93 ..    4487    4526 ..    4480    4548 .. 0.90

  Alignments for each domain:
  == domain 1  score: 299.6 bits;  conditional E-value: 2.3e-92
                    --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllle 94 
                    ep a+vGm++rfPgg+  ++++w+l+ +gr++ +++p+dr wd ++l++ +++ +g+++t++ggfl  + +fdp+ffgisprea amdpqqrllle
     KIR65895.1  34 EPMAVVGMACRFPGGVRgPDDLWDLVDAGREGLGDFPTDRgWDLERLFHVDPDNPGTSYTDQGGFLYdATEFDPAFFGISPREALAMDPQQRLLLE 129
                    789************999****************************************************************************** PP

                    HHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt  95 aawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslr 190
                     awea+e+a l+p++l+gsr+gvf+Gv+++dya  ++ld +++ v+++   +g+ + + ++gr++y++gl+Gp+vtvdtACsSslvavh+avq+lr
     KIR65895.1 130 SAWEAFESADLDPQRLRGSRTGVFAGVMYHDYA-SRVLDLPEG-VEGYL-GTGN-SGSLVSGRVAYTYGLEGPAVTVDTACSSSLVAVHLAVQALR 221
                    ********************************6.578888886.9****.****.***************************************** PP

                    TTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    ++++d+alaGGv++l tp+ +a fs+++ l+pdgrck+f+++adG+ ++EGvG+++L+rl+da
     KIR65895.1 222 QRDCDLALAGGVTVLSTPGVFAEFSRQRGLAPDGRCKSFADAADGTGWAEGVGVLLLQRLSDA 284
                    *************************************************************98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.6
                    HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTT.GGGSCTTH CS
  ketoacyl-synt  95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgs.evkaspka 145
                    + ++al++a l p+++d  +   +g ++G  ++ +a la+   +g+ +  a p +
     KIR65895.1 320 VIRQALANARLAPADVDAVEahgTGTTLGDPIEAQALLAT---YGQdRAGAEPLW 371
                    5689***********9777766799999988886643333...333123344444 PP

  == domain 3  score: 319.8 bits;  conditional E-value: 1.5e-98
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     +p+aivG+++rfPgg d ++++welL +g+d+ise+padr wd d+l+dp++   g+++t++ggfl  +++fdp ffgisprea amdpqqrll
     KIR65895.1 1810 DPIAIVGLACRFPGGADnPDQLWELLATGGDGISEFPADRgWDLDTLFDPDPANSGTSYTRHGGFLYgAAEFDPGFFGISPREALAMDPQQRLL 1903
                     69************9999**************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     le+awe++e+agl+p++l+gsr+gvf+Gv+++dya  +++d +  ev+++   +g+ + +v++gr++y++gl+Gp+vtvdtACsSslva+h+a 
     KIR65895.1 1904 LETAWETFESAGLDPHRLRGSRTGVFAGVMYHDYAS-RLMDLPA-EVEGYI-GTGT-SGSVLSGRVAYTFGLEGPAVTVDTACSSSLVALHLAA 1993
                     **********************************66.4444455.499***.9999.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     q+lrsge+d+alaGGv+++ tp++++ fs+++ ls+dgrck+f+++adG+ +GEGvG+++++rl+da
     KIR65895.1 1994 QALRSGECDLALAGGVTVMATPGTFVEFSRQRGLSADGRCKSFAAAADGTGWGEGVGMLLVQRLADA 2060
                     ****************************************************************997 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.8
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTTGGGSCT CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgsevkasp 143 
                     + ++al++a ltp+++d  +   +g ++G  ++ +a la++ +d     ++p
     KIR65895.1 2096 VIRQALANARLTPADVDAVEahgTGTTLGDPIEAQALLATYGQDR--PADRP 2145
                     6789************77776679999999888664333333222..23333 PP

  == domain 5  score: 304.5 bits;  conditional E-value: 7.3e-94
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     ep+aiv+m++r+Pgg+  +e++w+l+ +grdai+ +padr wd d+ ydp+++++g+++++ ggf++ v+ fd+++fgisprea  mdpqqrll
     KIR65895.1 3352 EPIAIVAMSCRYPGGVAsPEDLWRLVADGRDAIAGFPADRgWDLDAIYDPDPDTPGTSYVREGGFVAdVAGFDAALFGISPREALVMDPQQRLL 3445
                     89**************99**************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     le+ we +e+ag+ p++l++s++gvf+G++ +dya+l +  +++   +++  a+g+ +a+v++gr+sy++gl+Gpsv+vdtACsSslva+h+av
     KIR65895.1 3446 LETGWELFERAGIAPADLRESNTGVFVGTNGQDYATLLMAARAE--TEGYQ-ATGN-VAAVVSGRLSYTFGLQGPSVSVDTACSSSLVALHLAV 3535
                     **********************************9877777666..79999.****.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     qslr+ge+d+a+aGGv+++ tp+ +  f++++ l++dgrck+f+ +adG+ +GEG+G+++L+rl+da
     KIR65895.1 3536 QSLRAGECDTAVAGGVTVMATPGPFLEFARQRGLAADGRCKSFAGAADGTGWGEGAGLLLLQRLSDA 3602
                     *****************************************************************98 PP

  == domain 6  score: -3.9 bits;  conditional E-value: 9.8
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTT CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgs 137 
                     + ++al++a lt++++d  +   +g  +G  ++ +   a+l  +g+
     KIR65895.1 3638 VIQQALANARLTAADVDAVDghgTGTRLGDPIEAQ---ALLATYGQ 3680
                     6789*********9996665333777666666644...34444444 PP

  == domain 7  score: -3.2 bits;  conditional E-value: 5.9
                     E-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHH CS
  ketoacyl-synt   55 gkiktklggfld.vddfdpeffgispreaeamdpqqrlll 93  
                      ++++ +gg+ld  +++dp++     r ++++d   +l++
     KIR65895.1 4487 LEHPAHWGGLLDlPAELDPAAGDHLLRALTNTDAEDQLAV 4526
                     577899******************9999999999999886 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.8   0.4   1.3e-56   1.1e-53       2     316 ..     565     882 ..     564     885 .. 0.95
   2 !  292.0   0.1   7.5e-90   6.4e-87       1     318 [.    2343    2661 ..    2343    2662 .. 0.97
   3 !  171.4   0.2   3.8e-53   3.3e-50       3     318 ..    3899    4218 ..    3898    4219 .. 0.95

  Alignments for each domain:
  == domain 1  score: 182.8 bits;  conditional E-value: 1.3e-56
                    EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTH CS
  Acyl_transf_1   2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlG 93 
                    f+fsGqG+Q  GMG+eL +  ++faa++++   a+ ++    + +vl ++       ll +++f+q +L+av++a + l  s+G++p+++vGHS+G
     KIR65895.1 565 FLFSGQGAQRPGMGRELAEAFPVFAAALDEVCAALDAHLPRPLREVLFAAAGtpeaDLLHQTVFTQAGLFAVEVASFRLAGSFGLAPDLLVGHSIG 660
                    9**********************************************98876677799************************************** PP

                    HHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH...TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECC CS
  Acyl_transf_1  94 ElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklr.cqddvvgavansprrvvisgsqealrelvervskegvgalvenv 186
                    ElAaa+vag l++++a+  v+ r+rlm+ l   g+m+av+   a + e l+  + ++  a++n+p  vv+sg  +a++e+ ++++++g   ++ +v
     KIR65895.1 661 ELAAAHVAGVLTLADAATLVAARGRLMQALPAGGAMLAVAAdeASVVESLAgVTGRIGIAAVNGPAAVVVSGDAAAVEEVAAHWAERGTPIHRLRV 756
                    ***************************************998867777777799****************************************** PP

                    CEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHH.HHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCHH CS
  Acyl_transf_1 187 nvavhspqvdaiadalasaladiaprkpkvakisstsldes.serelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlks 281
                    + a+hs+ +d++  + a+  a ++  +p+v+  s ++ + +  e  +s +ywv+ +r++vrfa+av ++ae +  + ve+ p  +l+a  +  l +
     KIR65895.1 757 SHAFHSELMDPMLAEFAAVAAGLTFSPPTVPIVSNLTGRVAgPELLCSPDYWVRHVREAVRFADAVDRLAEAGVGTYVELGPNGVLTAMAQSCLTD 852
                    ******************9999*************9999996667899***********************************************6 PP

                    GGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT CS
  Acyl_transf_1 282 aedvksatlvGklkrdltdflvtflyllakahltg 316
                        ++a lv+  ++d  +  +++l +la++h  g
     KIR65895.1 853 ----PTAVLVPLSRKDRPE-PRALLEALARLHADG 882
                    ....9*************9.999999999999766 PP

  == domain 2  score: 292.0 bits;  conditional E-value: 7.5e-90
                     EEEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T.TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTH CS
  Acyl_transf_1    1 vfvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe.glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlG 93  
                     vfvfsG GsQw GM+++Ll++s++faa+ia+++ ++ +  ++s++ vlr ++  + l a  +vqpaL av+++la l++s Gvrp++vvGHS+G
     KIR65895.1 2343 VFVFSGHGSQWPGMAVDLLDSSPVFAASIAECEAVLTPWVDWSLTGVLRGAEGaPPLVASGVVQPALWAVMVSLARLWRSLGVRPGGVVGHSQG 2436
                     8************************************************9996578999*********************************** PP

                     HHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS....HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEE CS
  Acyl_transf_1   94 ElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel...aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalve 184 
                     E+Aaa vagal++e+a++ v+lrs++   +ag g+m +v+l    + ++  r+  ++++av+n+p++vv++g  + l++lv+ + ++gv+ + +
     KIR65895.1 2437 EIAAACVAGALTLEDAAKIVALRSQVLVDIAGRGGMVSVALpadRARDLLKRWAGRLSVAVVNGPGSVVVAGDVDDLADLVAACTADGVRTRPI 2530
                     *****************************************98444445556****************************************** PP

                     CCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCC CS
  Acyl_transf_1  185 nvnvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalekt 278 
                     +v++a+hspqv+a+a  l++ l  i+pr+++++++s+++ ++ +++ l+a yw++nlr++v f++av+++++++++vf+e+ pH++l  ++++t
     KIR65895.1 2531 DVEYASHSPQVEAVAGRLLASLDGITPRPAELPFYSALTGEQTDTTSLDAGYWYRNLRETVNFEQAVRNLLADGHQVFLEVGPHPVLSFGMQET 2624
                     ********************************************************************************************** PP

                     CHHGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT-H CS
  Acyl_transf_1  279 lksaedvksatlvGklkrdltdflvtflyllakahltgse 318 
                     ++     ++a++v +l+r+ ++   + l++la++h+ g+e
     KIR65895.1 2625 ID--TAEHEAAVVNTLRRGDGG-WARILTALAELHVRGVE 2661
                     **..5678999***********.999**********9997 PP

  == domain 3  score: 171.4 bits;  conditional E-value: 3.8e-53
                     EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TT CS
  Acyl_transf_1    3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSl 92  
                     +fsGqG+Q aGMG+eL++  +afa+++++  +++ ++    +  vl +++      l+ +++f+q +L+av++al  ll   G  p++v+GHS+
     KIR65895.1 3899 LFSGQGAQHAGMGRELYRAFPAFAEALDEVCQHLDAHLPRPLKAVLFAADGsaeaDLIHQTVFTQAGLFAVEVALHRLLAGWGIVPDLVAGHSV 3992
                     6**********************************************9998888899************************************* PP

                     HHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH...TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEE CS
  Acyl_transf_1   93 GElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklr.cqddvvgavansprrvvisgsqealrelvervskegvgalv 183 
                     GE+ aa+vag ls+ +a   v  r+rlm+ l   g+m+av+   a +e  l     +v +a++n+p  vv+sg  +al +l  +  + gv+ ++
     KIR65895.1 3993 GEITAAHVAGVLSLPDACALVGNRGRLMQALPAGGGMLAVAApeADVEATLVpYAGRVAVAAVNGPAAVVVSGDGDALTDLADHFTALGVRTKR 4086
                     ******************************************999999999999**************************************** PP

                     ECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHH.CHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCC CS
  Acyl_transf_1  184 envnvavhspqvdaiadalasaladiaprkpkvakisstsldesser.elsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaale 276 
                      +v+ a+hsp ++++  + a+  a +   +p+v+  s ++ ++++++  +  +ywv+ +r +vrfa++v ++   + ++ +e+ p  +l+a   
     KIR65895.1 4087 LTVSHAFHSPLMEPMLAEFAAVAAGLDYAPPTVPLVSNLTGRAADPElICTPDYWVRHVRDAVRFADTVDHLHSLGVATLLEVGPDTVLTALAA 4180
                     ********************999999999*************9976526889****************************************** PP

                     CCCHHGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT-H CS
  Acyl_transf_1  277 ktlksaedvksatlvGklkrdltdflvtflyllakahltgse 318 
                     ++l    d+ +  + G  +++ ++ ++++l +la++h  g++
     KIR65895.1 4181 DALP---DAGRTLVTGVQRPGRGE-AEALLGALARLHCHGVR 4218
                     ***9...67777777755566655.************99987 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.7   2.4   2.9e-60   2.5e-57       1     179 [.    1439    1615 ..    1439    1616 .. 0.98
   2 ?   -0.7   0.0       1.3   1.1e+03      41      86 ..    2794    2837 ..    2777    2841 .. 0.79
   3 !  176.5   5.6   5.4e-55   4.6e-52       1     179 [.    2976    3153 ..    2976    3154 .. 0.99
   4 !  173.4   0.8   4.9e-54   4.2e-51       2     179 ..    4555    4732 ..    4554    4733 .. 0.99

  Alignments for each domain:
  == domain 1  score: 193.7 bits;  conditional E-value: 2.9e-60
                  SEEEEETTTSHHHHHHHHHHHH.HHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR    1 gtylitGGlGgLGlelarwlae.kgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96  
                  gt+l+tGG+G+LG  +a++l+   gar+l+l+sR+++a + ++al ++l+ lga+vevvaaDv+d+d v+al++ +    ++++Gv+h+Agvl+d+ 
  KIR65895.1 1439 GTVLVTGGTGALGALVAEHLVTaYGARSLLLVSRQGPAAPGADALAERLTGLGARVEVVAADVTDPDRVTALVAGVG---GRLAGVVHTAGVLDDGV 1532
                  89******************96379***************************************************7...899************** PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  ++  + e+l+ vlapK ++aw+Lhe+++ ++ld+fv++SS+ag+lgs+gqa+YaaaN+flDala+yrr+ glpa s++wg+w+
  KIR65895.1 1533 VTAISPERLAGVLAPKAAAAWHLHEATAGRDLDLFVVYSSVAGVLGSPGQAAYAAANTFLDALAAYRRQAGLPAASLAWGMWD 1615
                  **********************************************************************************6 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.3
                  HHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEE CS
          KR   41 skaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvi 86  
                    + +++l + ga+v+ +a+  +d++a++a l+e++  +++++Gv+
  KIR65895.1 2794 VGQVVQALGEAGADVTPLAVADADRAALAARLAEVD--AAAVTGVL 2837
                  5678999*********99988888888888888887..55688886 PP

  == domain 3  score: 176.5 bits;  conditional E-value: 5.4e-55
                  SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------T CS
          KR    1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkll 97  
                  gt l+tGGlG+LG ++arwla++g +hlvl+sR+++a + +++l ael+ lga+v+v+a+Dv+d+d+++al++++ a++ ++  v+haAgv++ ++l
  KIR65895.1 2976 GTALVTGGLGSLGAHVARWLAREGTAHLVLTSRQGPAAAGAAELEAELTGLGARVTVAACDVADADSLRALVDRLAADGVTVDAVFHAAGVAHAGPL 3072
                  799********************************************************************************************** PP

                  TT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   98 eemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  + ++ ++l+  l++Kv+Ga nL+e+l   ++  fvlfSS ag++g   q+ Yaa+NaflDalae rr++gl+a++++wg+w+
  KIR65895.1 3073 AGTDVAELADGLHAKVAGAVNLDEVLG-GDVSAFVLFSSGAGVWGGGLQGGYAAGNAFLDALAEDRRRRGLAATAVAWGAWD 3153
                  **************************8.7****************************************************7 PP

  == domain 4  score: 173.4 bits;  conditional E-value: 4.9e-54
                  EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TT CS
          KR    2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklle 98  
                  t+litGG+G++G   a wla++gar+l+l+sR+++  +  +a++ael++lga+ ++va+D++d+dav+al++ +++++++++ v+haAgv r ++++
  KIR65895.1 4555 TVLITGGTGAIGSYAAAWLARHGARRLILVSRRGPDAPGVAATLAELADLGAHARAVACDLADRDAVAALVAGLRRDGETVRAVVHAAGVGRLNPVS 4651
                  78*********************************************************************************************** PP

                  T--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   99 emtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                   + +++l+ v+a K +Ga++L+e+l +++l+++v+fSSia+ +g   +++Yaa+NaflDa+a++r +  +++vs+nwg+wa
  KIR65895.1 4652 VVGTDELADVVAGKTAGARHLDEFLDPDDLELVVYFSSIAAAWGVGDHGAYAAGNAFLDAWAQSRPAGRARVVSVNWGPWA 4732
                  ********************************************************************************8 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.1   0.4   5.8e-47   4.9e-44       1     117 [.     292     409 ..     292     410 .. 0.99
   2 !  153.9   0.2   1.8e-48   1.6e-45       1     117 [.    2068    2185 ..    2068    2186 .. 0.99
   3 !  144.8   0.4   1.3e-45   1.1e-42       1     117 [.    3610    3727 ..    3610    3728 .. 0.99

  Alignments for each domain:
  == domain 1  score: 149.1 bits;  conditional E-value: 5.8e-47
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-GGG CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHleaA 93 
                      yavi+gsavn+dga+ +lt+png +q+r+i++ala+a+++p+dvd veahgtgt+lgDpiE++al +++g+++   +pl++gSvKsn+GH++aA
       KIR65895.1 292 YAVIRGSAVNQDGASSGLTTPNGPSQERVIRQALANARLAPADVDAVEAHGTGTTLGDPIEAQALLATYGQDRAgAEPLWLGSVKSNLGHTQAA 385
                      9************************************************************************9999***************** PP

                      HHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  94 aGvaelikvvlalkhgvipptlnl 117
                      aGva+lik+v+al+hg +p+tl++
       KIR65895.1 386 AGVAGLIKMVQALRHGRLPATLHV 409
                      ***********************8 PP

  == domain 2  score: 153.9 bits;  conditional E-value: 1.8e-48
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       ya+++g+avn+dga+n+ltapng +q+r+i++ala+a+++p+dvd veahgtgt+lgDpiE++al +++g+++  ++pl +gS+KsniGH++
       KIR65895.1 2068 YAIVRGTAVNQDGASNGLTAPNGPSQQRVIRQALANARLTPADVDAVEAHGTGTTLGDPIEAQALLATYGQDRPaDRPLLLGSIKSNIGHTQ 2159
                       89**********************************************************************99*9**************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaGva++ik+vlal+hg +pptl++
       KIR65895.1 2160 AAAGVAGVIKMVLALRHGLVPPTLHV 2185
                       *************************8 PP

  == domain 3  score: 144.8 bits;  conditional E-value: 1.3e-45
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       +av++gsa+nsdga+n+ltapng aq+r+i++ala+a+++++dvd v  hgtgt+lgDpiE++al +++g+++  ++pl +gS+KsniGH++
       KIR65895.1 3610 LAVVRGSATNSDGASNGLTAPNGPAQQRVIQQALANARLTAADVDAVDGHGTGTRLGDPIEAQALLATYGQDRPaNRPLLLGSIKSNIGHTQ 3701
                       69**********************************************************************99999*************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaGv ++ik+v+al+h+ +pptl++
       KIR65895.1 3702 AAAGVSGVIKMVMALQHDLLPPTLHV 3727
                       *************************8 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.1   9.3     6e-59   5.1e-56       1     292 [.     932    1199 ..     932    1203 .. 0.90
   2 ?   -3.0   0.1       3.8   3.3e+03     237     296 ..    2904    2963 ..    2893    2964 .. 0.79

  Alignments for each domain:
  == domain 1  score: 190.1 bits;  conditional E-value: 6e-59
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hpllG+ v+ a  + v+   rl+la + wL+DH+v g vv+Pga+ +e+++ A+ ++     a ++r++++ ++l lpe ++v+vq+++ +++d  +
  KIR65895.1  932 HPLLGAAVSVAGEDMVLLTGRLSLATHGWLADHAVSGVVVVPGAALVELVVRAGDEVG----ASRVRELTVATPLALPEAGGVRVQVRVGAADDTGA 1024
                  9********************************************************9....677***************************66555 PP

                  ....EEEEEEE-SS-TT.EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE---GG CS
       PS-DH   98 rawvefeifSregggeewtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealaelrlpee 194 
                   + v+++  S+e+ +++w++ha+G ++ a++++      + l    ++p+++++v+ a++Y++la rgl yGp+F+glr+lw+gdge++ae++lpee
  KIR65895.1 1025 -RAVTVHAQSEEDPEGGWVRHAEGVLEPAAADE------PVL--GVWPPVAATEVDLAQWYDALAGRGLAYGPAFRGLRRLWTGDGEVYAEVALPEE 1112
                  .7677777777777766**********665544......555..7789999999******************************************* PP

                  GSSTTTT-SB-HHHHHHHHHHG..GG----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEESEEEEE- CS
       PS-DH  195 laggesayvlhPallDaalQllaaalsaeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieglrlrrv 291 
                  +ag ++a+ +hPallDaal+ ++a l   a++++ +++P+a++ ++v+    +  +    ++rl+++g    +++l+++d +G +v++++ l lr  
  KIR65895.1 1113 AAGPAAAFGVHPALLDAALHPVGALL---ADADGGPRVPFAFSGVQVHA---S--GATALRVRLTRDG---SAVRLVATDGAGAPVVSVDALALREM 1198
                  ********************887766...489****************6...2..3456666776665...489*******************9986 PP

                  - CS
       PS-DH  292 e 292 
                  +
  KIR65895.1 1199 T 1199
                  5 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.8
                  EEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEESEEEEE--XXXX CS
       PS-DH  237 erlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieglrlrrvereal 296 
                  +r++  +++++ g+ +   a+l+++   +++a l  v ++++v ++ +gl  rr+ r+a+
  KIR65895.1 2904 GRVAALEHADRWGGLVDLPAKLDRRARGRLAAVLAGVGHEDQVAVRTSGLFARRLARAAA 2963
                  55555555555666677778888888889999999999*****************99975 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   2.8e-18   2.4e-15       1     110 [.     412     527 ..     412     529 .. 0.85
   2 !   62.2   0.0   6.7e-20   5.7e-17       1     111 [.    2188    2307 ..    2188    2308 .. 0.92
   3 !   46.9   0.0   3.7e-15   3.2e-12       1      88 [.    3730    3826 ..    3730    3857 .. 0.87

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 2.8e-18
  KAsynt_C_assoc   1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeeskeeslprL..lvlsgrteeaveallekleehlldae 89 
                     P+++i+ ++ g + + tep pwp       ++v+sfG++G+n+HviL++++ +++++ +  +  p L  ++ls+r++e++ al+ + ++hl+ ++
      KIR65895.1 412 PSEHID-WSAGAVSLLTEPRPWPAVDrprrAAVSSFGISGTNAHVILEQAPAAEEPDPAAPAVVPPLspVLLSARSPESLAALARRWADHLDADP 505
                     899***.***************99888999*********************888888777566665533899******************99999 PP

  KAsynt_C_assoc  90 llsllneilse.eisrlpyRGy 110
                     + + ++ ++s+ ++++lp R+ 
      KIR65895.1 506 DARPVDVAASSlARAGLPRRAV 527
                     9999988765405555888876 PP

  == domain 2  score: 62.2 bits;  conditional E-value: 6.7e-20
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk....eeslprLlvlsgrteeaveallekleehl 85  
                      P+p+i+ ++ g +++ te+tpwp       ++v+sfG++G+n+Hv+L++++++  + es+    ++     +vls+ + +a+++++++l++hl
      KIR65895.1 2188 PSPHID-WTAGAVTLATEATPWPAVDrprrAAVSSFGISGTNAHVVLEQAPEPVVAAESRpgaaTDAGLVPFVLSATDRAALREQAARLRAHL 2279
                      99****.***************99888999*********************887777777777789999999********************* PP

  KAsynt_C_assoc   86 ldaellsllneilseeisr..lpyRGya 111 
                      + +++++ ++  ++ +++r  +p+R+ +
      KIR65895.1 2280 AAHPEVEPAEVGYALATTRaaFPHRAVV 2307
                      *******999999888888889**9876 PP

  == domain 3  score: 46.9 bits;  conditional E-value: 3.7e-15
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk....eeslprLl..vlsgrteeavealleklee 83  
                      P p+++ ++ g + +  eptpwp       ++v++fG++G+n+HviL++++ ++++++++    e++ p Ll  v+sg +++++ a++++l++
      KIR65895.1 3730 PTPHVD-WAAGAVALLAEPTPWPAVDrprrAAVSAFGVSGTNAHVILEQAPPADDRPQPQagdaEPPAPPLLpwVVSGDDADGLAAQATRLAD 3821
                      99****.***************99888999*********************8888887777888888888863368***************** PP

  KAsynt_C_assoc   84 hllda 88  
                      + + a
      KIR65895.1 3822 WAEAA 3826
                      96554 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   2.6e-13   2.2e-10       3      65 ..    1720    1783 ..    1718    1785 .. 0.89
   2 !   37.2   0.0   3.2e-12   2.7e-09       3      67 .]    3264    3329 ..    3262    3329 .. 0.90
   3 !   45.9   0.0   6.3e-15   5.4e-12       2      67 .]    4842    4908 ..    4841    4908 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 2.6e-13
  PP-binding    3 lrelvaevlgvplee.idpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65  
                  +r lva+vlg    + + +d  +++lG+DSl+av+l ++++++ g+++ ++ +f++pt++ la 
  KIR65895.1 1720 VRGLVAQVLGHGGADaVPADRAFRELGFDSLTAVDLRNRVNAATGLRLASTLVFDYPTPRILAG 1783
                  899********55552569999*************************************97775 PP

  == domain 2  score: 37.2 bits;  conditional E-value: 3.2e-12
  PP-binding    3 lrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +r  +a vlg  ++e+i++d ++++ G+DSl+ave+ ++l e+ g+++p + +f+ pt+  la +l
  KIR65895.1 3264 VRVHAAAVLGHaSAEAIGADRPFREIGFDSLSAVEMRNRLGEAVGLRLPATLVFDRPTPTLLAGWL 3329
                  5666788999768888*******************************************9998875 PP

  == domain 3  score: 45.9 bits;  conditional E-value: 6.3e-15
  PP-binding    2 klrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   +r+++a v+g  ++ ++++d +++dlG+DSl+avel ++l +e g++  +s++f++pt+++la++l
  KIR65895.1 4842 LIRTAAAAVIGHdSPYALEADRPFRDLGFDSLTAVELRGRLARETGLSPASSVVFDYPTPQALAEHL 4908
                  58899999999844444899*********************************************97 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   1.0   2.4e-12   2.1e-09       2     160 ..    1440    1596 ..    1439    1625 .. 0.74
   2 ?   -3.5   0.1       7.1     6e+03      15      47 ..    2796    2828 ..    2790    2836 .. 0.80
   3 !   49.8   0.7   3.2e-16   2.7e-13       2     182 ..    2977    3152 ..    2976    3165 .. 0.89
   4 !   40.2   0.1   2.9e-13   2.4e-10       2     161 ..    4555    4714 ..    4554    4728 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 2.4e-12
                  EEEEESTTSHHHHHHHHHHHH.TT-EEEE.EESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SS CS
   adh_short    2 vvlvtGassGIGraiakelak.eGakvvv.vdrseekleevakelkee....gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgp 92  
                  +vlvtG+++ +G  +a++l++  Ga+ ++ v+r+  +++  a+ l e     ga++ ++++Dvtd ++v alv+ +    g+l  +v+ AG+  +g 
  KIR65895.1 1440 TVLVTGGTGALGALVAEHLVTaYGARSLLlVSRQ-GPAAPGADALAERltglGARVEVVAADVTDPDRVTALVAGV---GGRLAGVVHTAGVLDDGV 1532
                  79****************98626***99955555.55444444444433444************************...6999999******66666 PP

                  GGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEE....EEEEEEGGGTSB-TTBHHHHHHHHHHHHHH CS
   adh_short   93 fselseeewervievNltgvflltravlpamlkqssGr....IvnvsSvagkvpvagvaaYsAsKaavaglt 160 
                  +  +s e+   v++    ++ +l +a         +Gr     v  sSvag  +++g+aaY+A+  ++++l+
  KIR65895.1 1533 VTAISPERLAGVLAPKAAAAWHLHEA--------TAGRdldlFVVYSSVAGVLGSPGQAAYAAANTFLDALA 1596
                  66666666655555555555555554........44443333899****************99876666654 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 7.1
                  HHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT CS
   adh_short   15 aiakelakeGakvvvvdrseekleevakelkee 47  
                  +++++l ++Ga+v+ ++  +++ +++a+ l e 
  KIR65895.1 2796 QVVQALGEAGADVTPLAVADADRAALAARLAEV 2828
                  689999999999999999999999999988876 PP

  == domain 3  score: 49.8 bits;  conditional E-value: 3.2e-16
                  EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGG CS
   adh_short    2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee....gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfs 94  
                  ++lvtG+ + +G  +a+ la+eG  ++v+ +++ ++++ a+el++e    ga+++++++Dv+d+++++alv++ +++  ++d++ + AG+++ gp +
  KIR65895.1 2977 TALVTGGLGSLGAHVARWLAREGTAHLVLTSRQGPAAAGAAELEAEltglGARVTVAACDVADADSLRALVDRLAADGVTVDAVFHAAGVAHAGPLA 3073
                  69**************************99999999999999999999999********************************************** PP

                  GCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB CS
   adh_short   95 elseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlv 182 
                   ++ +e  + ++  + g+++l     ++ l +   + v  sS ag  +   +  Y+A     +++ ++la++ +++g   +ava G+ 
  KIR65895.1 3074 GTDVAELADGLHAKVAGAVNL-----DEVLGGDVSAFVLFSSGAGVWGGGLQGGYAAG----NAFLDALAEDRRRRGLAATAVAWGAW 3152
                  *******************96.....5557788999*******************876....56666667777777777777776655 PP

  == domain 4  score: 40.2 bits;  conditional E-value: 2.9e-13
                  EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT...TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGG CS
   adh_short    2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee...gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfs 94  
                  +vl+tG+++ IG   a  la+ Ga+ ++ v+r+  ++  va+ l e+   ga+a a+++D++dr++v alv+  + + +++ ++v+ AG+ + +p+s
  KIR65895.1 4555 TVLITGGTGAIGSYAAAWLARHGARRLIlVSRRGPDAPGVAATLAELadlGAHARAVACDLADRDAVAALVAGLRRDGETVRAVVHAAGVGRLNPVS 4651
                  79**********************99888999887776666655555555****************************************9999999 PP

                  GCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHH CS
   adh_short   95 elseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltr 161 
                   +  +e  +v++    g+ +l + +           +v  sS+a+  +v    aY+A  a+++++++
  KIR65895.1 4652 VVGTDELADVVAGKTAGARHLDEFLD----PDDLELVVYFSSIAAAWGVGDHGAYAAGNAFLDAWAQ 4714
                  99999999988877766655543333....3455678888888888888888888887777776665 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   2.4e-09     2e-06      56     116 ..     179     237 ..     169     251 .. 0.88
   2 !   32.3   0.1   7.5e-11   6.4e-08      55     117 ..    1954    2014 ..    1947    2035 .. 0.86
   3 !   25.4   0.1   9.5e-09   8.1e-06      75     116 ..    3514    3555 ..    3491    3563 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 2.4e-09
                 TTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEEST CS
  Thiolase_N  56 agegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsms 116
                 +++g+ ++  +a   g+  e pavtv+ +csS+l av+la+q+++  ++d ++agGv  +s
  KIR65895.1 179 GNSGSLVSGRVAYTYGL--EGPAVTVDTACSSSLVAVHLAVQALRQRDCDLALAGGVTVLS 237
                 56777788888889999..89***********************************98777 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 7.5e-11
                  CTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N   55 qagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117 
                  ++ +g+ ++  +a   g+  e pavtv+ +csS+l a++laaq++++ge+d ++agGv  m +
  KIR65895.1 1954 TGTSGSVLSGRVAYTFGL--EGPAVTVDTACSSSLVALHLAAQALRSGECDLALAGGVTVMAT 2014
                  566788888888889999..99************************************99976 PP

  == domain 3  score: 25.4 bits;  conditional E-value: 9.5e-09
                  TSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEEST CS
  Thiolase_N   75 evpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsms 116 
                  + p+v v+ +csS+l a++la+qs++age+d +vagGv  m 
  KIR65895.1 3514 QGPSVSVDTACSSSLVALHLAVQSLRAGECDTAVAGGVTVMA 3555
                  678999********************************9886 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.7   6.8e-08   5.8e-05      17     152 ..    1462    1596 ..    1448    1639 .. 0.80
   2 !   38.7   2.7   9.3e-13     8e-10       4     108 ..    2985    3093 ..    2980    3100 .. 0.88
   3 !   27.3   1.1   2.7e-09   2.3e-06       5     151 ..    4564    4712 ..    4560    4727 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 6.8e-08
                    TT-E.EEEEESSGGHHHHHHHHHHHTT...SEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHH CS
  adh_short_C2   17 eGae.vvltdlneeakkrveelaeelg...aev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlys 105 
                     Ga+ ++l+ ++  a+  +++lae+l    a+v  +++DVtd++ v+alv+ v    g+l ++v+ ag+ ++  g ++ +s e ++ +l+ ++ +
    KIR65895.1 1462 YGARsLLLVSRQGPAAPGADALAERLTglgARVevVAADVTDPDRVTALVAGVG---GRLAGVVHTAGVLDD--GVVTAISPERLAGVLAPKAAA 1551
                    46654444444444444455555554323277455****************987...89*************..********************* PP

                    HHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHH CS
  adh_short_C2  106 lfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealt 152 
                    +++l +a +   ++    v  ssv++  + p+++ay+aa   l al+
    KIR65895.1 1552 AWHLHEATAG--RDLDLFVVYSSVAGVLGSPGQAAYAAANTFLDALA 1596
                    *999888743..445899********************998888775 PP

  == domain 2  score: 38.7 bits;  conditional E-value: 9.3e-13
                    TSHHHHHHHHHHHTT.-EEEEEESSGGHHHHHHHHHHHTT...SEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2    4 sgIGraiAkalaeeG.aevvltdlneeakkrveelaeelg...aev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsr 92  
                     ++G+++A+ la+eG a++vlt ++  a++ ++el++el    a+v   +cDV+d ++++alv++++++  ++D ++++ag+a++  gp++ t+ 
    KIR65895.1 2985 GSLGAHVARWLAREGtAHLVLTSRQGPAAAGAAELEAELTglgARVtvAACDVADADSLRALVDRLAADGVTVDAVFHAAGVAHA--GPLAGTDV 3077
                    599************678*******99988888888876545466455*************************************..******** PP

                    HHHHHHHHHHTHHHHH CS
  adh_short_C2   93 eefdraldvnlyslfl 108 
                    +e+++ l+ ++ ++++
    KIR65895.1 3078 AELADGLHAKVAGAVN 3093
                    **99999999999876 PP

  == domain 3  score: 27.3 bits;  conditional E-value: 2.7e-09
                    SHHHHHHHHHHHTT-E.EEEEES.SGGH...HHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2    5 gIGraiAkalaeeGae.vvltdl.neea...kkrveelaeelgae..vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsr 92  
                     IG  +A  la++Ga+ ++l+ + + +a   +++++ela+ lga+  +++cD +d+++v+alv+ ++++ +++  +v++ag+ +   +p+  +  
    KIR65895.1 4564 AIGSYAAAWLARHGARrLILVSRrGPDApgvAATLAELAD-LGAHarAVACDLADRDAVAALVAGLRRDGETVRAVVHAAGVGRL--NPVSVVGT 4655
                    59999**********8755555504444334445555554.5555246*************************************..99888888 PP

                    HHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHH CS
  adh_short_C2   93 eefdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaaleal 151 
                    +e++++++    + ++ a+++ + + +     +v  ss++a  +v ++ ay+a  a l a 
    KIR65895.1 4656 DELADVVA----GKTAGARHLDEFLDPDdlELVVYFSSIAAAWGVGDHGAYAAGNAFLDAW 4712
                    88777765....7778889999977766688899999999999999999999988877765 PP

>> PKS_DE  Polyketide synthase dimerisation element domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.95   8.1e+02      16      41 ..    1573    1601 ..    1570    1603 .. 0.74
   2 !   47.5   7.7   2.2e-15   1.9e-12       1      44 [.    2707    2752 ..    2707    2752 .. 0.92
   3 ?   -1.2   6.3       3.7   3.2e+03       7      36 ..    2812    2841 ..    2811    2842 .. 0.85
   4 ?   -1.5   0.4       4.7     4e+03      11      32 ..    3075    3098 ..    3073    3099 .. 0.79
   5 !   42.1   3.6   1.1e-13   9.3e-11       1      43 [.    4266    4308 ..    4266    4309 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.95
      PKS_DE   16 LaatLgldada...sLsavLPaLsaWRrr 41  
                  +a+ Lg +++a   +  + L aL+a+Rr+
  KIR65895.1 1573 VAGVLGSPGQAayaAANTFLDALAAYRRQ 1601
                  6667777444446678899*********8 PP

  == domain 2  score: 47.5 bits;  conditional E-value: 2.2e-15
      PKS_DE    1 DaaFWaaVereDlaaLaatLgldada..sLsavLPaLsaWRrrrre 44  
                  D +FW+aVer+D++aLaa++++d ++  +L+++LP Ls+WR+rrr+
  KIR65895.1 2707 DRQFWDAVERADADALAAAMRIDTADarALGEALPLLSSWRQRRRD 2752
                  899*******************6444679***************96 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.7
      PKS_DE    7 aVereDlaaLaatLgl.dadasLsavLPaLs 36  
                  aV ++D aaLaa+L+  d +a+++ vL  L+
  KIR65895.1 2812 AVADADRAALAARLAEvD-AAAVTGVLSLLA 2841
                  89************9845.666999998886 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 4.7
      PKS_DE   11 eDlaaLaatLgl..dadasLsavL 32  
                   D+a+La+ L++  +++  L++vL
  KIR65895.1 3075 TDVAELADGLHAkvAGAVNLDEVL 3098
                  69*********9654344899998 PP

  == domain 5  score: 42.1 bits;  conditional E-value: 1.1e-13
      PKS_DE    1 DaaFWaaVereDlaaLaatLgldadasLsavLPaLsaWRrrrr 43  
                  D+aFW+aV ++D +aLa++ g+d+d +L++ LP L+ W+r+r+
  KIR65895.1 4266 DEAFWQAVADADGDALATRFGVDPDRPLRDQLPTLAHWHRQRQ 4308
                  89*********************999****************8 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   3.2e-06    0.0028       1     115 [.    1441    1572 ..    1441    1609 .. 0.79
   2 !   24.6   0.7   1.7e-08   1.5e-05       1     115 [.    2978    3110 ..    2978    3119 .. 0.68
   3 !   24.0   0.3   2.6e-08   2.2e-05       1      76 [.    4556    4646 ..    4556    4699 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.2e-06
                  EEEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTTTCHHCHHC............EEEE--TT-HHHHHHHHHHH..T-SEEEE--S.---HHHH CS
   Epimerase    1 ilVtGatGfiGsalvkallekg.ye.vigldrlssasntarledl............elveldltdrsalerlfkee..qpdavihlAa.vggvaas 80  
                  +lVtG+tG +G+ ++++l ++   + ++ ++r+  a + a    +            e+v +d+td++++++l++ +  +   v+h A+   +  ++
  KIR65895.1 1441 VLVTGGTGALGALVAEHLVTAYgARsLLLVSRQGPAAPGAD---AlaerltglgarvEVVAADVTDPDRVTALVAGVggRLAGVVHTAGvLDDGVVT 1534
                  79****************99987555888888855554433...224579*************************99889999******88887788 PP

                  HHSHHHHHH...HHTHHHHHHHHHHHHHTCTEEEEEEE CS
   Epimerase   81 sedpadfie...knlqgtlnlleaarkagvkrllflsS 115 
                  +++p++++      ++ +++l ea   ++++ ++  sS
  KIR65895.1 1535 AISPERLAGvlaPKAAAAWHLHEATAGRDLDLFVVYSS 1572
                  88887755422267888888888888888888888887 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 1.7e-08
                  EEEETTTSHHHHHHHHHHHHCTSEEEEEES-.STTTTCHHCHHC...........EEEE--TT-HHHHHHHHHH....H.T-SEEEE--S---HH.. CS
   Epimerase    1 ilVtGatGfiGsalvkallekgyevigldrl.ssasntarledl...........elveldltdrsalerlfke....e.qpdavihlAavggva.. 78  
                  +lVtG+ G +G+++++ l+++g   ++l+++   a + a+  +l           ++  +d+ d+++l++l+++       +dav+h+A+v++ +  
  KIR65895.1 2978 ALVTGGLGSLGAHVARWLAREGTAHLVLTSRqGPAAAGAA--ELeaeltglgarvTVAACDVADADSLRALVDRlaadGvTVDAVFHAAGVAHAGpl 3072
                  59********************775555555033333222..234588******************88887765222233789******98875311 PP

                  ..HHHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEE CS
   Epimerase   79 ..assedpadfieknlqgtlnlleaarkagvkrllflsS 115 
                    + + + ad +++ ++g++nl e++   +v  ++ +sS
  KIR65895.1 3073 agTDVAELADGLHAKVAGAVNLDEVLG-GDVSAFVLFSS 3110
                  114555556666677777777666554.34445555555 PP

  == domain 3  score: 24.0 bits;  conditional E-value: 2.6e-08
                  EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHH.....HHT-SEEEE--S--- CS
   Epimerase    1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledl..........elveldltdrsalerlfk.....eeqpdavihlAavgg 76  
                  +l+tG+tG iGs+ +  l+++g + +i ++r+   ++ +  ++l          + v +dl dr+a+++l++      e + av+h+A+vg 
  KIR65895.1 4556 VLITGGTGAIGSYAAAWLARHGARrLILVSRRGP-DAPGVAATLaeladlgahaRAVACDLADRDAVAALVAglrrdGETVRAVVHAAGVGR 4646
                  79********************776888888844.444444555788999******************999722221346889999999664 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   6.6e-05     0.057       1      74 [.    1442    1514 ..    1442    1528 .. 0.78
   2 !   18.0   0.0   1.8e-06    0.0015       1      84 [.    2979    3065 ..    2979    3072 .. 0.78
   3 !   20.8   0.0   2.5e-07   0.00022       1      75 [.    4557    4629 ..    4557    4644 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.6e-05
                     EEETTTSHHHHHHHHHHHHC.T-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlek.gyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev 74  
                     L+TG++G  G+ +ae+L++  g +   +v r+   ++   ++la++  + l  +++++ +D+tD ++++ l+a v
     KIR65895.1 1442 LVTGGTGALGALVAEHLVTAyGARSLLLVSRQ-GPAAPGADALAERL-TGLGARVEVVAADVTDPDRVTALVAGV 1514
                     9*****************98455555555554.45667788888755.57899******************9977 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.8e-06
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH.....T-SEEEE--S CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev.....qpdevynLAA 84  
                     L+TG+ G  G+++a++L ++g    +++ r+   ++g  e l+  + + l  ++++  +D+ D++sl+ l+++       +d+v++ A+
     KIR65895.1 2979 LVTGGLGSLGAHVARWLAREGTAHLVLTSRQGPAAAGAAE-LEA-ELTGLGARVTVAACDVADADSLRALVDRLaadgvTVDAVFHAAG 3065
                     9********************9999998888877766655.554.3456889*******************987222225566666555 PP

  == domain 3  score: 20.8 bits;  conditional E-value: 2.5e-07
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevq 75  
                     LiTG++G iGsy a +L + g +  ++v r    + g  ++la+    +l  + + + +Dl D++++  l+a  +
     KIR65895.1 4557 LITGGTGAIGSYAAAWLARHGARRLILVSRRGPDAPGVAATLAELA--DLGAHARAVACDLADRDAVAALVAGLR 4629
                     9**************************9999888888888887654..567899**************9998765 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00058       0.5       1      76 [.    1441    1514 ..    1441    1528 .. 0.77
   2 !   22.4   0.0   6.5e-08   5.6e-05       2     128 ..    2979    3110 ..    2978    3117 .. 0.78
   3 !   15.1   0.0   1.1e-05    0.0095       1      87 [.    4556    4644 ..    4556    4689 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00058
                       EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT.. CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel 76  
                       vlvtG++G++G  + +++++   +++++l++r+  +    +    e+l+   l +++ +v +dv+d +r++ ++  +
       KIR65895.1 1441 VLVTGGTGALGALVAEHLVTAyGARSLLLVSRQGPAAPGADAL-AERLTG--LGARVEVVAADVTDPDRVTALVAGV 1514
                       89**************99988799********99988777664.456665..4445558899*******99998755 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 6.5e-08
                       EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT.......T-SEEEE----- CS
  Polysacc_synt_2    2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekalee.....lkvdvvfhaAAlK 88  
                       lvtG+ Gs+G ++ r ++++  ++++l +r+  +    ++ le+el+   l +++++  +dv+d+++l+ ++++     ++vd+vfhaA + 
       KIR65895.1 2979 LVTGGLGSLGAHVARWLAREGTAHLVLTSRQGPAAAGAAE-LEAELTG--LGARVTVAACDVADADSLRALVDRlaadgVTVDAVFHAAGVA 3067
                       8*****************************9998776554.5555555..555666889*********999876222225799*******99 PP

                       -H.HHHHHSHHH...HHHHHHHHHHHHHHHHHHTT-SEEEEEEE CS
  Polysacc_synt_2   89 hV.Plveenple...aiktNvlgtenvieaaieagvkkvvliSt 128 
                       h  Pl+ + ++e   +++  v g+ n+ e  +  +v+++vl S+
       KIR65895.1 3068 HAgPLAGTDVAEladGLHAKVAGAVNLDE-VLGGDVSAFVLFSS 3110
                       97688887665422278899999988644.56778888888876 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 1.1e-05
                       EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT.......T-SEEEE---- CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel.....kvdvvfhaAAl 87  
                       vl+tG++G+iGs     ++++ ++++il++r       ++ +l  el++  l ++  +v +d++d++ ++ ++  l     +v +v+haA +
       KIR65895.1 4556 VLITGGTGAIGSYAAAWLARHGARRLILVSRRGPDAPGVAATLA-ELAD--LGAHARAVACDLADRDAVAALVAGLrrdgeTVRAVVHAAGV 4644
                       89***************************************994.4555..556667999********999987541112267889999975 PP

>> Docking  Erythronolide synthase docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   4.2   1.5e-11   1.3e-08       2      26 .]       3      27 ..       2      27 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.5e-11
     Docking  2 nEeKLRdYLKRvTaDLrqtRrRLrE 26
                +E   +dYL+R+TaDLr++RrR+rE
  KIR65895.1  3 TEAEFLDYLRRATADLREARRRVRE 27
                79999*******************9 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2       0.9   7.7e+02       1      70 [.    1441    1514 ..    1441    1533 .. 0.76
   2 !   11.7   0.3   0.00028      0.24       3      75 ..    2980    3058 ..    2978    3068 .. 0.81
   3 !   12.9   0.2   0.00011     0.097       1      69 [.    4556    4627 ..    4556    4643 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.9
                       EEEE--.SHHHHHHHHHHHCTCCT-GEEEEEESS...HHHHHHHHCHH..TTTCEEEEE--TTTHHHHHHHHHTTS CS
  Sacchrp_dh_NADP    1 vliiGa.GsvGqavaellarhfdvdaeitvadrs...keklealaaka..lgvrfeaialdaenyeavLaallkeg 70  
                       vl+ G+ G+ G  vae l+     +  + +++r+     +++ala+ +  lg r+e +a d+ +++  ++al+++ 
       KIR65895.1 1441 VLVTGGtGALGALVAEHLVTAYGAR-SLLLVSRQgpaAPGADALAERLtgLGARVEVVAADVTDPDR-VTALVAGV 1514
                       5777777999999999999987764.67777665111455666666669999*************99.88887765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00028
                       EE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.....TTTCEEEEE--TTTHHHHHHHHHTTS...SEEEE CS
  Sacchrp_dh_NADP    3 iiGa.GsvGqavaellarhfdvdaeitvadrskeklealaaka.....lgvrfeaialdaenyeavLaallkeg...dlvvn 75  
                       + G+ Gs G  va+ lar++    ++++ +r+   ++ +a+ +     lg r++ +a+d+++ ++ L al+      ++ v+
       KIR65895.1 2980 VTGGlGSLGAHVARWLAREGTA--HLVLTSRQGPAAAGAAELEaeltgLGARVTVAACDVADADS-LRALVDRLaadGVTVD 3058
                       55666***************98..9***999988866665544788*******************.9999865444455555 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 0.00011
                       EEEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.....TTTCEEEEE--TTTHHHHHHHHHTT CS
  Sacchrp_dh_NADP    1 vliiGa.GsvGqavaellarhfdvdaeitvadrskeklealaaka.....lgvrfeaialdaenyeavLaallke 69  
                       vli G+ G++G+ +a  larh+    ++++++r    +  +aa++     lg  + a+a+d ++++a +aal+++
       KIR65895.1 4556 VLITGGtGAIGSYAAAWLARHGAR--RLILVSRRGPDAPGVAATLaeladLGAHARAVACDLADRDA-VAALVAG 4627
                       6888999***************98..9******999999999988999******************9.8888765 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   2.2      0.05        43     106     238 ..     653     759 ..     622     761 .. 0.46
   2 !    7.7   0.5     0.003       2.5     105     132 ..    2428    2455 ..    2402    2537 .. 0.72
   3 ?   -2.0   0.2       2.8   2.4e+03     104     128 ..    3984    4008 ..    3959    4016 .. 0.72
   4 !    6.4   0.0    0.0079       6.8     190     240 .]    4044    4094 ..    4032    4094 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.05
         SAT 106 ylvGlCtGllaAaavacskslseLvplaveavrvafrlGlevarvaarleegsssssesWslavtglseeelekalaefneekglppasrvyisavsss 204
                  lvG+++G laAa va               v+++   + +va++ + ++   ++  +  +lav+ ++e+++ + la ++ +        + i+av+++
  KIR65895.1 653 LLVGHSIGELAAAHVAG--------------VLTLADAATLVAARGRLMQ-ALPA--GGAMLAVA-ADEASVVESLAGVTGR--------IGIAAVNGP 725
                 56666666666666543..............3333333333333333333.1111..12233333.3444444444433333........335555555 PP

         SAT 205 s.vtisGpPstleallksskakkkkkksklpiyap 238
                 + v++sG   ++e++ ++  a++ ++ ++l+++ +
  KIR65895.1 726 AaVVVSGDAAAVEEVAAHW-AERGTPIHRLRVSHA 759
                 5555555555555554444.333333445555555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.003
         SAT  105 tylvGlCtGllaAaavacskslseLvpl 132 
                   ++vG+++G +aAa+va + +l++  ++
  KIR65895.1 2428 GGVVGHSQGEIAAACVAGALTLEDAAKI 2455
                  579*************999998876554 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.8
         SAT  104 stylvGlCtGllaAaavacskslse 128 
                  +  ++G++ G + Aa va   sl++
  KIR65895.1 3984 PDLVAGHSVGEITAAHVAGVLSLPD 4008
                  5689*************99888876 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0079
         SAT  190 lppasrvyisavssss.vtisGpPstleallksskakkkkkksklpiyapyH 240 
                  +p a rv ++av++++ v++sG  ++l +l ++  a   ++k +l ++ ++H
  KIR65895.1 4044 VPYAGRVAVAAVNGPAaVVVSGDGDALTDLADHFTALGVRTK-RLTVSHAFH 4094
                  467789********999**********************999.9**999999 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.1    0.0026       2.2       1      66 [.    1441    1515 ..    1441    1531 .. 0.88
   2 ?    6.1   0.9    0.0081       6.9       2      64 ..    2979    3049 ..    2978    3083 .. 0.82
   3 ?    6.8   0.2     0.005       4.3       1      64 [.    4556    4627 ..    4556    4638 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0026
                  EEESSTTSHHHHHHHHHHHH.HT-EEEEEES-S......-SHHHHHHHHST..TEEEES-TT-HHHHHHHHTT-S CS
        NmrA    1 IlviGaTGrqGksvvrallk.aghkvralvRdt......kselakslkeaG..velvkgdlddkeslvealkgvd 66  
                  +lv+G+TG++G+ v+++l+   g +   lv  +         la+ l   G  ve+v++d+ d + + +++ gv 
  KIR65895.1 1441 VLVTGGTGALGALVAEHLVTaYGARSLLLVSRQgpaapgADALAERLTGLGarVEVVAADVTDPDRVTALVAGVG 1515
                  79**************99886788888888777899999999999999999555889***********9999985 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0081
                  EESSTTSHHHHHHHHHHHHHT-EEEEEES-S......-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHTT CS
        NmrA    2 lviGaTGrqGksvvrallkaghkvralvRdt......kselakslkeaGvelv..kgdlddkeslvealkg 64  
                  lv+G+ G++G++v+r l+++g    +l+  +        el ++l   G+ +   + d+ d +sl+++++ 
  KIR65895.1 2979 LVTGGLGSLGAHVARWLAREGTAHLVLTSRQgpaaagAAELEAELTGLGARVTvaACDVADADSLRALVDR 3049
                  79*******************9999999887899999999999999999865335999********99974 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.005
                  EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S......-SHHHHHHHHSTTE..EEES-TT-HHHHHHHHTT CS
        NmrA    1 IlviGaTGrqGksvvrallkaghkvralvRdt......kselakslkeaGve..lvkgdlddkeslvealkg 64  
                  +l++G+TG++G++ ++ l+++g +  +lv            ++++l++ G+    v+ dl d++ +++++ g
  KIR65895.1 4556 VLITGGTGAIGSYAAAWLARHGARRLILVSRRgpdapgVAATLAELADLGAHarAVACDLADRDAVAALVAG 4627
                  79**************************97666799888889999***998622689999999999998876 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1      0.12     1e+02       3      38 ..     202     237 ..     200     265 .. 0.84
   2 ?   -2.1   0.1       4.2   3.5e+03      50      63 ..    1177    1190 ..    1167    1197 .. 0.79
   3 ?   10.3   0.2   0.00055      0.47       3      31 ..    1978    2006 ..    1976    2022 .. 0.87
   4 ?    6.3   0.6      0.01       8.6       3      30 ..    3520    3547 ..    3518    3556 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.12
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGG CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetls 38 
                  + +aCs+ ++a+++A +++++  +  +L  g  +ls
   KIR65895.1 202 VDTACSSSLVAVHLAVQALRQRDCDLALAGGVTVLS 237
                  5689****************9999888877776666 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.2
                   TTB-EEEEEEEEEE CS
  ACP_syn_III   50 vlfGDGAgAvvlea 63  
                   ++  DGAgA v++ 
   KIR65895.1 1177 LVATDGAGAPVVSV 1190
                   5678*****99986 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00055
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEE CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLv 31  
                   + +aCs+ ++al++A+++++sg++  +L 
   KIR65895.1 1978 VDTACSSSLVALHLAAQALRSGECDLALA 2006
                   5689******************9998886 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.01
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEE CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvL 30  
                   + +aCs+ ++al++A + +++g++ +++
   KIR65895.1 3520 VDTACSSSLVALHLAVQSLRAGECDTAV 3547
                   578*******************999886 PP

>> GBP_PSP  Paralytic/GBP/PSP peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1       0.1        87      15      20 ..     253     258 ..     251     259 .. 0.91
   2 ?    2.5   0.1      0.13   1.1e+02      15      20 ..    2029    2034 ..    2027    2035 .. 0.91
   3 ?    2.5   0.1      0.13   1.1e+02      15      20 ..    3571    3576 ..    3569    3577 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.1
                 TTS-EE CS
     GBP_PSP  15 aDGRCK 20 
                 +DGRCK
  KIR65895.1 253 PDGRCK 258
                 9****9 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.13
                  TTS-EE CS
     GBP_PSP   15 aDGRCK 20  
                  aDGRCK
  KIR65895.1 2029 ADGRCK 2034
                  9****9 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.13
                  TTS-EE CS
     GBP_PSP   15 aDGRCK 20  
                  aDGRCK
  KIR65895.1 3571 ADGRCK 3576
                  9****9 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.39   3.3e+02       2      59 ..    1440    1525 ..    1439    1571 .. 0.79
   2 ?   -2.1   0.0       1.8   1.6e+03     246     282 ..    2556    2591 ..    2550    2594 .. 0.86
   3 ?    7.0   2.3    0.0033       2.8       3      90 ..    2978    3090 ..    2976    3097 .. 0.87
   4 ?    3.1   0.2     0.048        41       2      59 ..    4555    4642 ..    4554    4647 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.39
                     EEEEESTTSHHHHHHHHHCTT.TSEEEEEE.-TT........................T--TTSHHHHHHHHHHH--S..EEEE-- CS
  RmlD_sub_bind    2 kilvtGanGqlGseLakqlae.eglevlal.tre........................eldltdaeavaellkeakpd..vvvnaA 59  
                     ++lvtG++G+lG  +a+ l    g+  l l +r+                        ++d+td+++v++l++ +  +   vv++A
     KIR65895.1 1440 TVLVTGGTGALGALVAEHLVTaYGARSLLLvSRQgpaapgadalaerltglgarvevvAADVTDPDRVTALVAGVGGRlaGVVHTA 1525
                     589*********99887765424544444325557888888888888888888888888888888888888876644311466665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.8
                     S--SS---SBE-B--HHHHHCCT----BHHHHHHHHH CS
  RmlD_sub_bind  246 yptpAkRPanSvLdtekleatfgiklrewrealkevl 282 
                      p+pA+ P +S+L  e++ +t  + +  w  +l+e++
     KIR65895.1 2556 TPRPAELPFYSALTGEQTDTT-SLDAGYWYRNLRETV 2591
                     599***************999.777778888887776 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0033
                     EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.........................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSH CS
  RmlD_sub_bind    3 ilvtGanGqlGseLakqlaeeglevlaltre.........................eldltdaeavaellkeakpdvvvnaAAytavDkaEsee 71  
                      lvtG+ G lG ++a+ la+eg++ l lt++                         ++d++da+++++l++    d v   A ++a   a   +
     KIR65895.1 2978 ALVTGGLGSLGAHVARWLAREGTAHLVLTSRqgpaaagaaeleaeltglgarvtvaACDVADADSLRALVDRLAADGVTVDAVFHAAGVAHAGP 3071
                     69********************9999997777****************************************9999999999999988887777 PP

                     HHHHHHHTHHHHHHHHHHH CS
  RmlD_sub_bind   72 eaayavnaeavealAeaaa 90  
                      a   v + a +  A++a 
     KIR65895.1 3072 LAGTDVAELADGLHAKVAG 3090
                     7777776666666666665 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.048
                     EEEEESTTSHHHHHHHHHCTTTSEEEEEE.-TT........................T--TTSHHHHHHHHHHH--S.....EEEE-- CS
  RmlD_sub_bind    2 kilvtGanGqlGseLakqlaeeglevlal.tre........................eldltdaeavaellkeakpd.....vvvnaA 59  
                     ++l+tG++G++Gs  a+ la++g+  l l +r+                        ++dl+d++ava+l++  + d     +vv+aA
     KIR65895.1 4555 TVLITGGTGAIGSYAAAWLARHGARRLILvSRRgpdapgvaatlaeladlgaharavACDLADRDAVAALVAGLRRDgetvrAVVHAA 4642
                     589*****************99988777635559*************************************55554433333899988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4998 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.63u 0.29s 00:00:01.92 Elapsed: 00:00:00.53
# Mc/sec: 28378.43
//
Query:       KIR65896.1  [L=3753]
Description: acyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.6e-181  599.0  15.6    1.6e-93  313.0   3.2    3.5  3  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
   3.7e-140  467.0  10.3    2.6e-79  267.0   0.4    2.7  2  Acyl_transf_1    Acyl transferase domain
   3.6e-117  388.7  11.8    1.4e-59  201.1   2.9    3.2  2  KR               KR domain
    2.1e-86  285.8  14.3    4.2e-44  149.3   1.7    3.4  2  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    1.6e-56  191.8   3.8    3.5e-56  190.6   3.8    1.7  1  PS-DH            Polyketide synthase dehydratase
    8.6e-33  113.1   0.0    3.1e-16   59.8   0.0    2.8  2  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    7.9e-27   93.4   0.1    1.3e-12   47.9   0.0    2.9  2  PP-binding       Phosphopantetheine attachment site
    4.6e-23   81.7  10.8    2.1e-15   56.7   0.5    3.8  3  adh_short        short chain dehydrogenase
    7.2e-20   72.4   3.9    9.9e-19   68.7   0.1    4.2  3  ADH_zinc_N_2     Zinc-binding dehydrogenase
    9.7e-18   64.4   3.0    4.5e-17   62.2   0.1    3.7  2  ADH_zinc_N       Zinc-binding dehydrogenase
    1.3e-14   54.4   7.9    1.3e-14   54.4   7.9    7.9  6  PKS_DE           Polyketide synthase dimerisation element dom
    7.8e-14   51.8   5.3    1.1e-09   38.2   1.9    2.9  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    4.4e-11   42.2   7.4    1.5e-10   40.5   7.4    2.1  1  Docking          Erythronolide synthase docking
    9.6e-11   41.5  13.7    3.2e-07   30.0   0.2    3.8  4  Thiolase_N       Thiolase, N-terminal domain
    5.3e-09   35.9  11.4    2.1e-05   24.1   0.3    3.0  4  Epimerase        NAD dependent epimerase/dehydratase family
    1.2e-08   34.4   0.0     0.0045   16.2   0.0    2.2  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
    1.6e-07   31.0   0.0    0.00072   19.0   0.0    2.3  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    7.5e-06   25.8   2.6    2.7e-05   24.0   0.1    2.5  2  ADH_N            Alcohol dehydrogenase GroES-like domain
     0.0033   17.0   1.5        1.1    8.8   0.1    2.6  2  NmrA             NmrA-like family
     0.0099   14.9   0.0      0.097   11.7   0.0    2.2  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
  ------ inclusion threshold ------
      0.025   14.3   8.9       0.23   11.1   0.0    3.8  3  SAT              Starter unit:ACP transacylase in aflatoxin b
       0.22   11.4   3.3        1.8    8.5   0.4    3.1  2  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
       0.29   11.5   0.6        4.2    7.8   0.1    2.5  2  DUF3864          Domain of Unknown Function with PDB structur
        4.8    7.2  13.8          8    6.5   0.1    5.7  4  YAcAr            YspA, cpYpsA-related SLOG family


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.1   0.3   1.2e-90   8.7e-88       2     253 .]      34     283 ..      33     283 .. 0.97
   2 !  313.0   3.2   2.1e-96   1.6e-93       2     253 .]    1576    1826 ..    1575    1826 .. 0.97
   3 ?   -2.9   0.1       5.6   4.2e+03      96     121 ..    2182    2212 ..    2168    2249 .. 0.64

  Alignments for each domain:
  == domain 1  score: 294.1 bits;  conditional E-value: 1.2e-90
                    --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllle 94 
                    epvaiv+m++r+Pgg + +e++w+ + +g+dai+e+p+dr wd d+l++p+++ +g+++t  ggfl  + +fd+++fgisprea amdpqqrllle
     KIR65896.1  34 EPVAIVAMSCRYPGGITsPEALWDFVSTGGDAIGEFPTDRgWDLDRLHHPDPDNPGTSYTAAGGFLYdAGRFDAALFGISPREALAMDPQQRLLLE 129
                    89**************99****************************************************************************** PP

                    HHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt  95 aawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslr 190
                    ++we +e+ag+ p +l+gsr+g f+G++ +dyaa ++++ +g  v++++  +g+ +a+v++gr++y++gl+Gp+vtvdtACsSs vavh+a+q+lr
     KIR65896.1 130 VTWELFERAGIAPLSLRGSRTGAFVGTSGQDYAA-VLHRAPG--VEGYV-LTGS-AASVVSGRLAYTFGLEGPTVTVDTACSSSSVAVHLACQALR 220
                    ********************************76.4444455..9****.9999.***************************************** PP

                    TTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    ++e+ +alaGG+++l tp+ ++ fs+++ l++dgrck+f+++adG+ ++EGvG+++L+rl+da
     KIR65896.1 221 QRECGLALAGGATVLATPGPFVEFSRQRGLAADGRCKSFAAAADGTGWSEGVGMLLLERLSDA 283
                    *************************************************************98 PP

  == domain 2  score: 313.0 bits;  conditional E-value: 2.1e-96
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     +pvaivGm++r+Pgg   ++++w+l+ +g dai+++p++r wd d+l+dp++ ++g++++++ggfl+ ++dfd++ffgisprea amdpqqrll
     KIR65896.1 1576 DPVAIVGMACRYPGGIAdPDQLWRLVADGADAIGDFPTNRgWDLDRLFDPDPATPGTSYADQGGFLHdAADFDAAFFGISPREALAMDPQQRLL 1669
                     69*************988**************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     lea+wea+e+ag++p+ l+gsr+gvf+G++ +dy+al +++ d    +++   +g+ +a+v++gr++yalgl+Gp+v+vdtACsSslva+h+av
     KIR65896.1 1670 LEASWEAVERAGVDPAGLRGSRTGVFVGTNGQDYGALLMMSADA--AEGFA-GTGN-AASVVSGRVAYALGLEGPAVSVDTACSSSLVALHLAV 1759
                     **********************************9977777665..67777.99*9.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     q+lr+ge+d+alaGGv++++tp ++a fs++++l++dgrckaf+++adG+ +GEGvG+++++rl+da
     KIR65896.1 1760 QALRRGECDLALAGGVTVMTTPATFAEFSRQRALAADGRCKAFAEAADGTGWGEGVGVLLVERLSDA 1826
                     *****************************************************************98 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 5.6
                     HHHHHHHHTS-HHTCTTGG.....EEEEEEE CS
  ketoacyl-synt   96 awealedagltpeeldgsr.....vgvfiGv 121 
                      +  +e+ag++p+++ g +     +++++G+
     KIR65896.1 2182 LAAVWEHAGVSPQAVVGHSqgeigAACVAGI 2212
                     5567999999999997776445333334443 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.0   4.1   1.1e-62   8.1e-60       2     318 ..     562     888 ..     561     889 .. 0.96
   2 !  267.0   0.4   3.4e-82   2.6e-79       1     316 [.    2110    2424 ..    2110    2427 .. 0.98

  Alignments for each domain:
  == domain 1  score: 203.0 bits;  conditional E-value: 1.1e-62
                    EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTH CS
  Acyl_transf_1   2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlG 93 
                    f++sGqG+Q aGMG+eL +  ++fa+++++   a+ ++    + +vl ++       lld+++f+q +L+av++al  ll s+G +p++v+GHS+G
     KIR65896.1 562 FLYSGQGAQRAGMGRELAAAFPVFAQALDEVCAALDPHLPRPLREVLFAAAGtpeaALLDQTVFTQAGLFAVEVALHRLLGSFGIAPDLVAGHSIG 657
                    9**********************************************9987667779*************************************** PP

                    HHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH...TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECC CS
  Acyl_transf_1  94 ElAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklr.cqddvvgavansprrvvisgsqealrelvervskegvgalvenv 186
                    E+ aa+vag  ++++a   v+ r+rlm+ l + g+m+av+   ae+ e l+  +  v  a++n+p +vv+sg   a++e+   ++++gv  ++ +v
     KIR65896.1 658 EVVAAHVAGVFTLADACALVAARGRLMQALPPGGAMLAVAAseAEVVESLAgVTGPVGIAAVNGPTSVVVSGAASAVDEVAGLWAARGVKTRRLKV 753
                    ****************************************9777777888879999**************************************** PP

                    CEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHH.HHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCHH CS
  Acyl_transf_1 187 nvavhspqvdaiadalasaladiaprkpkvakisstsldesserels.aeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlks 281
                    + a+hsp ++++    a+ +a + +r p ++  s ++ d ++++ +   +ywv+ +r++vrfa+ v+++++ +  +fve+ p ++l+aa e+t+  
     KIR65896.1 754 SHAFHSPLMEPMLAGFAAVVAGLDLRAPALPIVSNLTGDLADPEAIRtPDYWVRHVREAVRFADGVRALRAHGVGTFVEVGPDAVLAAAAEETVAT 849
                    *****************************************988875169********************************************99 PP

                    ...GGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT-H CS
  Acyl_transf_1 282 ...aedvksatlvGklkrdltdflvtflyllakahltgse 318
                       a dv++a++v+ l+rd  +  +++l++la++h++g +
     KIR65896.1 850 vaaAPDVATAAVVPALRRDRPE-RRALLAALAHLHVAGTA 888
                    88899*****************.9************9986 PP

  == domain 2  score: 267.0 bits;  conditional E-value: 3.4e-82
                     EEEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHH CS
  Acyl_transf_1    1 vfvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpeglldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGE 94  
                     vfvf+GqG+Q a M++ L    ++f a +a++ +a++++ +  +  vl+  +e+ l+++++vqp+L av iala++++ +Gv p avvGHS+GE
     KIR65896.1 2110 VFVFPGQGAQSARMAAGLVGRAPVFDARLAECQRALAPHLDVDLVSVLTGDDESWLERVEVVQPVLWAVGIALAAVWEHAGVSPQAVVGHSQGE 2203
                     8********************************************************************************************* PP

                     HHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECC CS
  Acyl_transf_1   95 lAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalvenv 186 
                     + aa vag ls+e+a++ v+lrsr  + l g g+ma+v l  ++++ +l  ++ v +a++n+p++vv+sg+++++++lv  ++++g++a+ + v
     KIR65896.1 2204 IGAACVAGILSLEDAARTVALRSRALAVLRGTGAMASVDLsaDAVTARLPAFPGVGVAAVNGPSTVVVSGPPQPVADLVDACQADGIRARLIPV 2297
                     ****************************************8777788888******************************************** PP

                     CEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCH CS
  Acyl_transf_1  187 nvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlk 280 
                     ++a+hsp v+++a+ l+++lad++p++ ++   s+++ d  +++ + a+yw++nlr++v+f++av+ a++ ++ +fveispH++l++ +   l+
     KIR65896.1 2298 DYASHSPSVQDVAERLRADLADVTPQPGRIRLVSTLTGDWVEPESMTADYWYDNLRQTVQFDAAVRVAIAAGHTTFVEISPHPVLTMPVTAILD 2391
                     ********************************************************************************************** PP

                     HGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT CS
  Acyl_transf_1  281 saedvksatlvGklkrdltdflvtflyllakahltg 316 
                       + + +   +G+l+r+ +d   ++l++la+ah +g
     KIR65896.1 2392 --DAGVTGHTLGSLRRGDDD-PTRLLTNLATAHAIG 2424
                     ..678888899*********.************988 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.1   2.9   1.8e-62   1.4e-59       1     180 []    1197    1376 ..    1197    1376 .. 0.99
   2 !  192.3   0.6   9.2e-60   6.9e-57       1     179 [.    3311    3489 ..    3311    3490 .. 0.98

  Alignments for each domain:
  == domain 1  score: 201.1 bits;  conditional E-value: 1.8e-62
                  SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------T CS
          KR    1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkll 97  
                  gt litGG+GgLG   arwla+ ga+h+vl+sR+++a + +++l ael+alg++v+v+a+D++d++a++ ll++++a++pp++ v+h+Agv+++++l
  KIR65896.1 1197 GTALITGGTGGLGARAARWLAAAGAEHVVLVSRRGPAAPGAADLEAELTALGTRVTVAACDITDRAALADLLRRVEADGPPVRTVVHTAGVAQTTPL 1293
                  799********************************************************************************************** PP

                  TT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BTT CS
          KR   98 eemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwae 180 
                  +e+ta++l++v+  K +Ga +Lh ll+d++ld fv++SSia+++gsagqa Yaa+Na+lDal+++rr+ g+++++++wg+wa+
  KIR65896.1 1294 AEVTAAELAEVTGGKTTGATHLHDLLADRDLDAFVVYSSIAATWGSAGQAGYAAGNAYLDALVQQRRADGHAGTALAWGPWAD 1376
                  *********************************************************************************86 PP

  == domain 2  score: 192.3 bits;  conditional E-value: 9.2e-60
                  SEEEEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR    1 gtylitGGlGgLGlelarwlaekg.arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96  
                  gt+l+ G++G LG  l+r+l+  + ar+l+l+sR+++  e ++al+a l+alga+v++vaaD++d+dav+ +l+ ++a++ p++ v+haAgvl+d+ 
  KIR65896.1 3311 GTVLVSGATGTLGALLCRHLVTAHdARQLLLVSRRGPDAEGADALLADLKALGADVSIVAADLADPDAVADVLSMVDARH-PLRAVVHAAGVLDDGV 3406
                  89*******************9888***************************************************9766.**************** PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  le+mt ++l++vl+pKv++awnLh+++  ++l  fvlfS +ag++g +gq+nYaa+NaflDalae+rr++glpavs+ wg wa
  KIR65896.1 3407 LESMTPDRLAAVLRPKVDAAWNLHRATVGHELTAFVLFSAAAGVFGGPGQGNYAAGNAFLDALAEHRRALGLPAVSLTWGRWA 3489
                  **********************************************************************************7 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5   0.8   1.8e-45   1.4e-42       2     117 ..     292     408 ..     291     409 .. 0.98
   2 !  149.3   1.7   5.6e-47   4.2e-44       1     117 [.    1834    1951 ..    1834    1952 .. 0.98

  Alignments for each domain:
  == domain 1  score: 144.5 bits;  conditional E-value: 1.8e-45
                      EEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   2 avikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHleaAa 94 
                      ++i+ savnsdga+n+ltapng aq+r+i++ala a+++p+ vd+veahgtgt+lgDpiE++al +++g+++   +pl +gS+Ksn+GH++aAa
       KIR65896.1 292 GIIRSSAVNSDGASNGLTAPNGPAQQRVIRQALAGAKLTPDLVDVVEAHGTGTTLGDPIEAQALLATYGQDRGdAAPLLLGSIKSNLGHSQAAA 385
                      789*******************************************************************999999****************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      G+a++ik+v+a++hg++p+tl++
       KIR65896.1 386 GIAGIIKMVMAMRHGTVPATLHV 408
                      **********************8 PP

  == domain 2  score: 149.3 bits;  conditional E-value: 5.6e-47
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       +av++gsavn+dga+n+ltapng +q+r+i++ala+ag++  dvd+veahgtgt+lgDpiE++al +++g+++   +pl +gS+KsniGH++
       KIR65896.1 1834 LAVVRGSAVNQDGASNGLTAPNGPSQQRVIRQALASAGLSTVDVDVVEAHGTGTTLGDPIEAQALLATYGQDRGdAAPLLLGSIKSNIGHTQ 1925
                       69*********************************************************************999999*************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaGva++ik+vla++hg++p+tl++
       KIR65896.1 1926 AAAGVAGIIKMVLAMRHGTVPATLHV 1951
                       *************************8 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.6   3.8   4.7e-59   3.5e-56       1     295 [.    2473    2755 ..    2473    2758 .. 0.90

  Alignments for each domain:
  == domain 1  score: 190.6 bits;  conditional E-value: 4.7e-59
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hpll + ++ a+d+ vv   rl+++ +pwL+DH v+g+vv+Pg+g + m++ A+ ++  ++    + d+++ ++lv+p+ ++v+vq+++ +  d   
  KIR65896.1 2473 HPLLSAAIPVADDQTVVLTGRLSVRTHPWLADHGVGGTVVVPGTGIVDMVVRAGDEVDAGQ----VGDLTLISPLVVPPAGAVQVQVRVGAPSDTGE 2565
                  9*********************************************************888....*************************9955444 PP

                  ....EEEEEEE-SS-TT...EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE--- CS
       PS-DH   98 rawvefeifSregggee..wtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealaelrlp 192 
                      +++++Sr++g+++  wt+ha+G +  +   +a+ v + ++++++a +++   ++ +++Y  +a  gl yGp+F+glr++wrg +ea+ae++lp
  KIR65896.1 2566 ---RTVTVHSRTEGDGDgeWTRHAEGLLLPQ--LPAPLVVPGEWPPADAVEVD---ADLDAWYADMAGGGLGYGPAFRGLRRVWRGVDEAYAEVALP 2654
                  ...5899999998888888**********55..45557888888999999998...99999************************************ PP

                  GGGSSTTTT-SB-HHHHHHHHHHG..GG.....----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEE CS
       PS-DH  193 eelaggesayvlhPallDaalQllaaal.....saeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeie 284 
                  +++a+++ ++ lhPal DaalQ+ +++      +a+ + a+++ +P+a+  + ++     +  +l+v+ r  +++    +  +tl d +G++va++e
  KIR65896.1 2655 DAVAADAPRFGLHPALFDAALQASGLTGllgdgNADGDTAGTGWMPFAFRAVGLHA---HGATRLRVRLRPLGTD----TLAVTLADTAGQPVATVE 2744
                  **********************66655579**98899******************6...3344555555554444....7899************** PP

                  SEEEEE--XXX CS
       PS-DH  285 glrlrrverea 295 
                   l++r+v ++ 
  KIR65896.1 2745 SLTFRPVAAGR 2755
                  ******99875 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   4.1e-19   3.1e-16       1     111 [.     411     525 ..     411     526 .. 0.87
   2 !   50.5   0.0   3.2e-16   2.4e-13       1     111 [.    1954    2073 ..    1954    2074 .. 0.91

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 4.1e-19
  KAsynt_C_assoc   1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeeskeeslprLlvlsgrteeaveallekleehlldaell 91 
                     P p+++ ++ g +++vteptpwp       ++v+sfG++G+n+H+iL++++ +++++++++++ p  ++l grt +a+++++e+ + + +da+ +
      KIR65896.1 411 PTPHVD-WAAGAVTLVTEPTPWPAVDrprrAAVSSFGMSGTNTHLILEQPEAADAATDADRPEPPAPVLLTGRTRAALRRQAEQWSRYVADAAPH 504
                     99****.***************99888999****************************9999**************************8876663 PP

  KAsynt_C_assoc  92 sllneilseeisr..lpyRGya 111
                       ++ + s+ +sr  l++R+ +
      KIR65896.1 505 -PADVAWSSVTSRspLEHRAVV 525
                     .444444444444458888765 PP

  == domain 2  score: 50.5 bits;  conditional E-value: 3.2e-16
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk....eeslprLlvlsgrteeaveallekleehl 85  
                      P+ +i+ ++ g +++vte+tpwpg+      +v+sfG++G+n+Hvi+++ +++ ++  +      +   +++ +s+r++ a+  ++e+l+++ 
      KIR65896.1 1954 PSGHID-WTAGAVELVTEATPWPGTGrprrSAVSSFGMSGTNAHVIVEQGDEPAAPAVTGvpglVDADVTVWSVSARSKVALAGQAERLAAYV 2045
                      7889**.****************9988999*********************99999888888999999************************* PP

  KAsynt_C_assoc   86 ldaellsllneilseeisr..lpyRGya 111 
                      +++  l+ ++   s +++r  ++ R+ +
      KIR65896.1 2046 REHGVLDTAAVGWSLATTRstFDQRAAV 2073
                      *****99999988888877667777766 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   7.7e-14   5.8e-11       2      67 .]    1485    1552 ..    1484    1552 .. 0.92
   2 !   47.9   0.0   1.7e-15   1.3e-12       3      67 .]    3596    3661 ..    3594    3661 .. 0.93

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 7.7e-14
  PP-binding    2 klrelvaevlgvplee..idpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   +r+ +a+vlg +  +  i+++t ++dlG+DSl+avel ++l ++ g ++p + +f+hp++  la++l
  KIR65896.1 1485 LIRDHAADVLGHDGGPaaIGATTAFRDLGFDSLTAVELRNRLAAATGQALPTTLVFDHPSPIVLARFL 1552
                  68999*******66665599*****************************************9999875 PP

  == domain 2  score: 47.9 bits;  conditional E-value: 1.7e-15
  PP-binding    3 lrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +++ va vlg  ++  i+p+  +++lG+DSl+avel ++l ++ g+++p + +f++pt+a+laa+l
  KIR65896.1 3596 VLSNVAVVLGHgDPAGIEPTRAFRELGFDSLTAVELRNRLGAATGLRLPATLVFDNPTPAALAAHL 3661
                  67778999999777779***********************************************97 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.5   2.8e-18   2.1e-15       2     164 ..    1198    1360 ..    1197    1365 .. 0.87
   2 ?   -0.3   0.0      0.81     6e+02      23      76 ..    2264    2318 ..    2259    2321 .. 0.86
   3 !   29.6   0.0   5.5e-10   4.1e-07       2     161 ..    3312    3471 ..    3311    3476 .. 0.88

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 2.8e-18
                  EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee....gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                  ++l+tG+++G+G   a+ la++Ga++vv v+r+  +++  a+ l++e    g++++++++D+tdr+++ +l+++++++  ++  +v+ AG+++++p 
  KIR65896.1 1198 TALITGGTGGLGARAARWLAAAGAEHVVlVSRR-GPAAPGAADLEAEltalGTRVTVAACDITDRAALADLLRRVEADGPPVRTVVHTAGVAQTTPL 1293
                  69**********************999955555.44444444444444444********************************************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrsla 164 
                  +e++++e  +v     tg+ +l  ++++        + v  sS+a+  ++ag+a Y+A  a +++l+++ +
  KIR65896.1 1294 AEVTAAELAEVTGGKTTGATHLHDLLADR----DLDAFVVYSSIAATWGSAGQAGYAAGNAYLDALVQQRR 1360
                  *************9999999998887666....56688999*****************9999988887755 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.81
                  TT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTT.SHHHHHHHHHHHHHHHS CS
   adh_short   23 eGakvvvvdrseekleevakelkeegakalaiqvDvt.dreevealvekavkklg 76  
                  +G ++vvv+  +++++ +++ ++++g +a  i+vD + ++ +v+++ e+ +++l 
  KIR65896.1 2264 NGPSTVVVSGPPQPVADLVDACQADGIRARLIPVDYAsHSPSVQDVAERLRADLA 2318
                  688889999999************************9667789999988887765 PP

  == domain 3  score: 29.6 bits;  conditional E-value: 5.5e-10
                  EEEEESTTSHHHHHHHHHHHHT.T-EEEE.EESC...HHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    2 vvlvtGassGIGraiakelake.Gakvvv.vdrs...eekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                  +vlv Ga++ +G  ++++l+++ +a+ ++ v+r+   +e + ++++ lk++ga++ ++++D++d ++v ++++ + ++  +l ++v+ AG+  +g  
  KIR65896.1 3312 TVLVSGATGTLGALLCRHLVTAhDARQLLlVSRRgpdAEGADALLADLKALGADVSIVAADLADPDAVADVLSMVDAR-HPLRAVVHAAGVLDDGVL 3407
                  69*****************97526666666887622256677899999999**********************99666.68**************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltr 161 
                  ++++ ++  +v+   + ++ +l ra + +    +  + v  s  ag  + +g+  Y+A  a++++l++
  KIR65896.1 3408 ESMTPDRLAAVLRPKVDAAWNLHRATVGH----ELTAFVLFSAAAGVFGGPGQGNYAAGNAFLDALAE 3471
                  *************************9888....67899999*****************9999998876 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       2.7     2e+03      24      96 ..     803     882 ..     785     891 .. 0.55
   2 ?    0.7   0.0       1.3     1e+03      13     107 ..    2336    2428 ..    2329    2437 .. 0.68
   3 !   68.7   0.1   1.3e-21   9.9e-19       5     133 .]    3171    3301 ..    3167    3301 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 2.7
                   EEEEES-HHHHH.HHHHHHE.EEE.EEEEE----......S-EEE-CHHHCTTT-EEEE--GGG...-....-HHHHHHHHHH CS
  ADH_zinc_N_2  24 Dvvldtvggealleaslkvl.pgg.Grlvsiggpp.....lsaallkpakkrkgrsvkyeflfsmkas...aqadileelaal 96 
                   D+ +  v  +  +++ +++l ++g G++v++g +      +      +a  +  + v +  ++++ ++   +++ +l++la+l
    KIR65896.1 803 DYWVRHVREAVRFADGVRALrAHGvGTFVEVGPDAvlaaaA---EETVATVAAAPDVATAAVVPALRRdrpERRALLAALAHL 882
                   55566666444556777777755559*****9444474432...333333333344444444442222345444445555555 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.3
                    THHHHH-TT-EEEEEES-HHHHH.HHHHHHE..EEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH--- CS
  ADH_zinc_N_2   13 dfeaatggegvDvvldtvggealleaslkvl..pggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGklrp 104 
                    d+++  ++   D+ +d++ ++  ++a+++v   +g+ ++v+i+     +  ++++++    ++v+ ++l s++++   d  + l++l  ++++  
    KIR65896.1 2336 DWVEP-ESMTADYWYDNLRQTVQFDAAVRVAiaAGHTTFVEISpH---PVLTMPVTAILDDAGVTGHTLGSLRRG-DDDPTRLLTNLATAHAIGL 2425
                    55522.345689999999977777999999997777889999944...344555555566778888888877777.6666666666666666666 PP

                    -EE CS
  ADH_zinc_N_2  105 vvd 107 
                    +vd
    KIR65896.1 2426 PVD 2428
                    666 PP

  == domain 3  score: 68.7 bits;  conditional E-value: 1.3e-21
                    EEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-....-HHHHHH CS
  ADH_zinc_N_2    5 evidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas...aqadilee 92  
                    +v  +r+ df+    + tgg+gvDvvl+++ ge +++asl++l++gGr+v++g++  +++  ++a++  g s ++  l++  a+   ++++ l+e
    KIR65896.1 3171 HVASSRSLDFVdafrDRTGGRGVDVVLNALSGE-FVDASLRLLAPGGRFVEMGKT-DKRDPQRVAADHPGVSYQVFDLIE--AGqdkIGEM-LAE 3260
                    78888899999999999**************99.67*******888*******63.566666666666555555555554..335677777.*** PP

                    HHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2   93 laalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133 
                    l+al++ G+lrp + r ++  +a+eA+r l ++r++GK+ l
    KIR65896.1 3261 LVALFATGALRPLPRRDWDVRRAPEAFRFLSQARHVGKLAL 3301
                    **************************************976 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4       2.1   1.5e+03       1      28 [.    1207    1235 ..    1207    1300 .. 0.63
   2 !   62.2   0.1   6.1e-20   4.5e-17       1      94 [.    3134    3227 ..    3134    3256 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.1
                  HHHHHHHHHHHHTT-.EEEEEESSHHHHH CS
  ADH_zinc_N    1 gvGlaavqlAkalGa.eviavdsseekle 28  
                  g+G  a  +++a+Ga +v+ v++    + 
  KIR65896.1 1207 GLGARAARWLAAAGAeHVVLVSRRGPAAP 1235
                  7899999999999**88888887665553 PP

  == domain 2  score: 62.2 bits;  conditional E-value: 6.1e-20
                  HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT.ESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSE CS
  ADH_zinc_N    1 gvGlaavqlAkalGaeviavdsseeklelakklG.adevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkge 94  
                  gvG+aavq+A++lGaev++++s   k   ++  G  d+ + +++  d+v++ ++ tgg+gvdvv++++  g+ ++a+l+ll+pgGr+v +G   + 
  KIR65896.1 3134 GVGMAAVQIARHLGAEVYGTASPG-KWPALRATGfDDAHVASSRSlDFVDAFRDRTGGRGVDVVLNALS-GEFVDASLRLLAPGGRFVEMGKTDKR 3227
                  9******************87654.789999999555667778999***********************.*********************74443 PP

>> PKS_DE  Polyketide synthase dimerisation element domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   2.3       2.1   1.6e+03      18      42 ..     848     872 ..     836     874 .. 0.63
   2 !   54.4   7.9   1.8e-17   1.3e-14       1      44 [.     933     978 ..     933     978 .. 0.93
   3 ?    0.1   0.1       1.7   1.3e+03       5      14 ..    1674    1683 ..    1671    1689 .. 0.84
   4 ?   -2.2   0.8       8.6   6.4e+03      11      35 ..    2813    2838 ..    2810    2840 .. 0.61
   5 ?    0.2   0.4       1.6   1.2e+03      10      25 ..    2832    2847 ..    2829    2855 .. 0.81
   6 ?   -1.0   0.7       3.7   2.8e+03      11      32 ..    3374    3396 ..    3357    3398 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 2.1
      PKS_DE  18 atLgldadasLsavLPaLsaWRrrr 42 
                 at+++++d + +av+PaL + R +r
  KIR65896.1 848 ATVAAAPDVATAAVVPALRRDRPER 872
                 344444455689******7666555 PP

  == domain 2  score: 54.4 bits;  conditional E-value: 1.8e-17
      PKS_DE   1 DaaFWaaVereDlaaLaatLgldada..sLsavLPaLsaWRrrrre 44 
                 D +FW+aVer+Dl+aL +tL++d+++  sL+a+LPaL++WRr+r+e
  KIR65896.1 933 DHRFWDAVERADLDALRDTLHIDDATadSLRALLPALADWRRQRQE 978
                 89********************745479****************98 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.7
      PKS_DE    5 WaaVereDla 14  
                  W+aVer+ ++
  KIR65896.1 1674 WEAVERAGVD 1683
                  ******9765 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 8.6
      PKS_DE   11 eDlaaLaatLgldada.sLsavLPaL 35  
                   D+a+Laa+L++++   +  a L aL
  KIR65896.1 2813 DDPAGLAAALAAAGHPvTAHADLAAL 2838
                  58899999998853333334444444 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 1.6
      PKS_DE   10 reDlaaLaatLgldad 25  
                  ++DlaaLaa+++ ++d
  KIR65896.1 2832 HADLAALAAEVERGGD 2847
                  68********998644 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 3.7
      PKS_DE   11 eDlaaLaatLgl.dadasLsavL 32  
                  +D++a+a+ L + da  +L+av+
  KIR65896.1 3374 ADPDAVADVLSMvDARHPLRAVV 3396
                  68888888888854444888876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   1.9   1.5e-12   1.1e-09       4     153 ..    1206    1357 ..    1202    1361 .. 0.84
   2 !   13.4   0.1   5.6e-05     0.042      34     151 ..    3355    3469 ..    3330    3472 .. 0.80

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 1.5e-12
                    TSHHHHHHHHHHHTT-E.EEEEESSGGH...HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2    4 sgIGraiAkalaeeGae.vvltdlneea...kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsr 92  
                     g+G+ +A+ la++Gae vvl+ ++  a   ++++e+  ++lg++v   +cD+td++++++l ++v+++   +  +v+ ag+a++  +p++e++ 
    KIR65896.1 1206 GGLGARAARWLAAAGAEhVVLVSRRGPAapgAADLEAELTALGTRVtvAACDITDRAALADLLRRVEADGPPVRTVVHTAGVAQT--TPLAEVTA 1298
                    599*************97777766666624445555555566677455*************************************..******** PP

                    HHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHH CS
  adh_short_C2   93 eefdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtr 153 
                    +e++++   +++++++l   +    +++   + v  ss++a+ + ++++ y+a  a l al++
    KIR65896.1 1299 AELAEVTGGKTTGATHLHDLL----ADRdlDAFVVYSSIAATWGSAGQAGYAAGNAYLDALVQ 1357
                    *******99999988776654....4444699*********************9999999986 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 5.6e-05
                    HHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEE CS
  adh_short_C2   34 veelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalplmkeggsivnl 126 
                    + +  ++lga+v  +++D +d+++v+++ + v +++  l  +v++ag+ ++  g +++++ + ++ +l  ++ ++++l +a +   +e  + v  
    KIR65896.1 3355 LLADLKALGADVsiVAADLADPDAVADVLSMVDARH-PLRAVVHAAGVLDD--GVLESMTPDRLAAVLRPKVDAAWNLHRATVG--HELTAFVLF 3444
                    33334457788566*****************99996.8*************..99999********************999854..444788888 PP

                    EEGGGTSBSTTTTHHHHHHHHHHHH CS
  adh_short_C2  127 ssvgaervvpnynaygaaKaaleal 151 
                    s  ++  + p++  y+a  a l al
    KIR65896.1 3445 SAAAGVFGGPGQGNYAAGNAFLDAL 3469
                    8888888888888888877766665 PP

>> Docking  Erythronolide synthase docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   7.4   2.1e-13   1.5e-10       1      26 []       2      27 ..       2      27 .. 0.98

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 2.1e-13
     Docking  1 anEeKLRdYLKRvTaDLrqtRrRLrE 26
                a+Ee+LR+YL Rv a+L+qtR+RLrE
  KIR65896.1  2 ADEERLREYLTRVIAELHQTRQRLRE 27
                8************************9 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.6     8e-07   0.00059      51     112 ..     173     232 ..     170     238 .. 0.91
   2 ?   -2.3   0.1         3   2.2e+03      29      66 ..     635     674 ..     632     679 .. 0.81
   3 !   30.0   0.2   4.3e-10   3.2e-07      62     122 ..    1727    1785 ..    1714    1803 .. 0.84
   4 ?   -3.4   0.2       6.4   4.8e+03      81     121 ..    2204    2244 ..    2199    2251 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8e-07
                 EHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEE CS
  Thiolase_N  51 GnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGv 112
                 G vl++ + + ++  +a   g+  e p+vtv+ +csS+  av+la+q+++  e+  ++agG+
  KIR65896.1 173 GYVLTGSAASVVSGRLAYTFGL--EGPTVTVDTACSSSSVAVHLACQALRQRECGLALAGGA 232
                 6788888888889999999999..999**********************************7 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3
                 HHHHHHHHHHTS-GGGCCEEEEEHSSCT.TSTSC.HHHHH CS
  Thiolase_N  29 ealkallekagvdpeevdevivGnvlqa.gegqn.iarqa 66 
                  al++ll + g++p+ v    +G+v++a ++g   +a + 
  KIR65896.1 635 VALHRLLGSFGIAPDLVAGHSIGEVVAAhVAGVFtLADAC 674
                 68999********************999788876344444 PP

  == domain 3  score: 30.0 bits;  conditional E-value: 4.3e-10
                  HHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS-EEE CS
  Thiolase_N   62 iarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsnaptae 122 
                  ++  +a ++g+  e pav v+ +csS+l a++la+q+++ ge+d ++agGv  m++  t +
  KIR65896.1 1727 VSGRVAYALGL--EGPAVSVDTACSSSLVALHLAVQALRRGECDLALAGGVTVMTTPATFA 1785
                  55667888888..89***************************************9876655 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 6.4
                  EEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS-EE CS
  Thiolase_N   81 vnkvcsSglkavalaaqsiaageadvvvagGvEsmsnapta 121 
                  +  +c  g+ ++ +aa+ +a  +   +v+ G+  m  ++ +
  KIR65896.1 2204 IGAACVAGILSLEDAARTVALRSRALAVLRGTGAMASVDLS 2244
                  6789****************************999988765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       7.9   5.9e+03      60      79 ..     830     849 ..     825     856 .. 0.80
   2 ?   -3.7   0.1       8.6   6.4e+03     205     222 ..     944     961 ..     938     966 .. 0.80
   3 !   24.1   0.3   2.8e-08   2.1e-05       1     115 [.    1199    1332 ..    1199    1346 .. 0.81
   4 !   19.3   0.1   8.3e-07   0.00062       1     119 [.    3313    3451 ..    3313    3462 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 7.9
                 HHHHT-SEEEE--S---HHH CS
   Epimerase  60 fkeeqpdavihlAavggvaa 79 
                 f e++pdav+ +Aa+ +va+
  KIR65896.1 830 FVEVGPDAVLAAAAEETVAT 849
                 56789*********988876 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8.6
                 TST-EEEEEEHHHHHHHH CS
   Epimerase 205 dgtalRdflyveDvaeai 222
                 d++alRd l+++D+   +
  KIR65896.1 944 DLDALRDTLHIDDATADS 961
                 7899*********87655 PP

  == domain 3  score: 24.1 bits;  conditional E-value: 2.8e-08
                  EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHHT-S.....EEEE--S.---HHHHH CS
   Epimerase    1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledl.........elveldltdrsalerlfkeeqpd.....avihlAa.vggvaass 81  
                  +l+tG+tG +G+  ++ l+++g e v+ ++r+  a + a++ ++         ++  +d+tdr+al++l++++++d     +v+h A+  ++ +   
  KIR65896.1 1199 ALITGGTGGLGARAARWLAAAGAEhVVLVSRRGPAAPGAADLEAeltalgtrvTVAACDITDRAALADLLRRVEADgppvrTVVHTAGvAQTTPLAE 1295
                  59********************888999999977777666555589*******************99999998877555558****99877888777 PP

                  HSHHHHHHH...HTHHHHHHHHHHHHHTCTEEEEEEE CS
   Epimerase   82 edpadfiek...nlqgtlnlleaarkagvkrllflsS 115 
                   ++a+++e     + g+++l + + +++++ ++  sS
  KIR65896.1 1296 VTAAELAEVtggKTTGATHLHDLLADRDLDAFVVYSS 1332
                  7777777751115678888888888888888888888 PP

  == domain 4  score: 19.3 bits;  conditional E-value: 8.3e-07
                  EEEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC............EEEE--TT-HHHHHHHHH....HHT-SEEEE--S..---H CS
   Epimerase    1 ilVtGatGfiGsalvkallekg..yevigldrlssasntarledl............elveldltdrsalerlfk....eeqpdavihlAa..vggv 77  
                  +lV GatG +G+ l+++l +++   +++ ++r+      a+ +d+            ++v +dl d++a++++++    ++   av+h+A+    gv
  KIR65896.1 3313 VLVSGATGTLGALLCRHLVTAHdaRQLLLVSRRGP---DAEGADAlladlkalgadvSIVAADLADPDAVADVLSmvdaRHPLRAVVHAAGvlDDGV 3406
                  79*****************9998545888888832...222233335788********************999972211345679****99644566 PP

                  HHHHH..SHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEE.GGGG CS
   Epimerase   78 aasse..dpadfieknlqgtlnlleaarkagvkrllflsS.sevY 119 
                   +s++  + a++++  +  ++nl  a   +++  ++ +s  + v+
  KIR65896.1 3407 LESMTpdRLAAVLRPKVDAAWNLHRATVGHELTAFVLFSAaAGVF 3451
                  676652244677788888888888888888888887777634455 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.7e-06     0.005       2     128 ..    1200    1332 ..    1199    1337 .. 0.76
   2 !   16.2   0.0     6e-06    0.0045       1     127 [.    3313    3445 ..    3313    3450 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.7e-06
                       EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T.....-SEEEE----- CS
  Polysacc_synt_2    2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelk.....vdvvfhaAAlK 88  
                       l+tG++G +G +  r +++  +++++l++r   +    ++ le+el++  l +++++  +d++d++ l+++l++++     v +v+h+A + 
       KIR65896.1 1200 LITGGTGGLGARAARWLAAAGAEHVVLVSRRGPAAPGAAD-LEAELTA--LGTRVTVAACDITDRAALADLLRRVEadgppVRTVVHTAGVA 1288
                       8*****************************9988765544.4344444..555666889*************998733333569***99876 PP

                       -.HHHHHHSHHHHHH...HHHHHHHHHHHHHHHTT-SEEEEEEE CS
  Polysacc_synt_2   89 h.VPlveenpleaik...tNvlgtenvieaaieagvkkvvliSt 128 
                       +  Pl+e  ++e  +      +g++++ +   + + +++v+ S+
       KIR65896.1 1289 QtTPLAEVTAAELAEvtgGKTTGATHLHDLLADRDLDAFVVYSS 1332
                       52799998776654411156778888888888888888887775 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 6e-06
                       EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT......T-SEEEE---- CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekale....elkvdvvfhaAAl 87  
                       vlv+Ga+G++G  l+r++++  ++++++l++r        +  l ++lk+  l +++  v +d++d + ++++l+    ++   +v+haA +
       KIR65896.1 3313 VLVSGATGTLGALLCRHLVTAhDARQLLLVSRRGPDAEGADALL-ADLKA--LGADVSIVAADLADPDAVADVLSmvdaRHPLRAVVHAAGV 3401
                       89***************998779**********99999888876.44444..666777889999999999998872222355689*****98 PP

                       --HHHHHH....SHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEE CS
  Polysacc_synt_2   88 KhVPlvee....npleaiktNvlgtenvieaaieagvkkvvliS 127 
                           ++e+      + +++  v ++ n+ +a++ ++ +++vl S
       KIR65896.1 3402 LDDGVLESmtpdRLAAVLRPKVDAAWNLHRATVGHELTAFVLFS 3445
                       87777776211134556677788888888888888888888777 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   9.7e-07   0.00072       1      77 [.    1200    1274 ..    1200    1289 .. 0.86
   2 !    9.6   0.0    0.0007      0.52       1      75 [.    3314    3387 ..    3314    3401 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.7e-07
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-S CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpd 77  
                     LiTG++G  G+  a++L + g e +++v r    + g  + l+  + + l +++++  +D+tD+++l +ll++v+ d
     KIR65896.1 1200 LITGGTGGLGARAARWLAAAGAEHVVLVSRRGPAAPGAAD-LEA-ELTALGTRVTVAACDITDRAALADLLRRVEAD 1274
                     9**********************99999998876666554.544.3456889********************99876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0007
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevq 75  
                     L+ G +G  G+ l+++L++ +     +       +++  ++l  d k  l  +++++ +Dl D +++ ++l+ v+
     KIR65896.1 3314 LVSGATGTLGALLCRHLVTAHDARQLLLVSRRGPDAEGADALLADLK-ALGADVSIVAADLADPDAVADVLSMVD 3387
                     89*****************99888888777788899999**999876.5789******************99875 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3      0.59   4.4e+02      33      64 ..    2512    2543 ..    2489    2550 .. 0.86
   2 !   24.0   0.1   3.6e-08   2.7e-05       2      61 ..    3016    3071 ..    3015    3080 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.59
                  EE---EEEEEEEEESTT-CS--TT-EEEE-SE CS
       ADH_N   33 lilGHEivGeveevgpevkklkvGdrVvvepl 64  
                  +++G  iv +v+ +g+ev+  +vGd  +++pl
  KIR65896.1 2512 VVPGTGIVDMVVRAGDEVDAGQVGDLTLISPL 2543
                  68899999999*************99998876 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 3.6e-08
                  TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE CS
       ADH_N    2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvv 61  
                  g+v++ ++a+g++  D+ +  g     v+   +lG E +G+v +vgp+v++++ GdrV+ 
  KIR65896.1 3016 GQVRVAMRASGLNFRDVVLTLG----MVPDQEVLGNEGAGVVLDVGPGVTGVAPGDRVMG 3071
                  79******************99....588888**************************86 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0061       4.6       2      66 ..    1200    1272 ..    1199    1276 .. 0.82
   2 !    8.8   0.1    0.0015       1.1       1      67 [.    3313    3388 ..    3313    3391 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0061
                  EESSTTSHHHHHHHHHHHHHT-EEEEEES-S......-SHHHHHHHHST..TEEEES-TT-HHHHHHHHTT-S CS
        NmrA    2 lviGaTGrqGksvvrallkaghkvralvRdt......kselakslkeaG..velvkgdlddkeslvealkgvd 66  
                  l++G+TG +G+  +r l++ag +  +lv           +l ++l + G  v++ + d+ d++ l+ +l+ v+
  KIR65896.1 1200 LITGGTGGLGARAARWLAAAGAEHVVLVSRRgpaapgAADLEAELTALGtrVTVAACDITDRAALADLLRRVE 1272
                  799****************887777776554569999888888999999434455999**********99986 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0015
                  EEESSTTSHHHHHHHHHHHH.HT-EEEEEES-S......-SHHHHHHHHSTTE..EEES-TT-HHHHHHHHTT-SE CS
        NmrA    1 IlviGaTGrqGksvvrallk.aghkvralvRdt......kselakslkeaGve..lvkgdlddkeslvealkgvdv 67  
                  +lv GaTG +G+ + r+l+  ++ +   lv            l++ lk+ G+   +v++dl d + ++ +l+ vd+
  KIR65896.1 3313 VLVSGATGTLGALLCRHLVTaHDARQLLLVSRRgpdaegADALLADLKALGADvsIVAADLADPDAVADVLSMVDA 3388
                  79***************998556666666644467888878888999**99751168************9999985 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.36   2.7e+02       1      81 [.    1200    1292 ..    1200    1343 .. 0.65
   2 !   11.7   0.0   0.00013     0.097       1     122 [.    3314    3452 ..    3314    3473 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.36
   3Beta_HSD    1 vvtGgaGFlGralvkeLvrleelkevrvlD.....lrespelleelskvnvkk.viegDvtdkdkleealegvdv.......vihlaslvdvag 81  
                  ++tGg+G lG++  + L  ++  ++v  +            l  el+ ++++  v  +D+td + l + l+ v++       v+h+a++ + + 
  KIR65896.1 1200 LITGGTGGLGARAARWLAAAGA-EHVVLVSrrgpaAPGAADLEAELTALGTRVtVAACDITDRAALADLLRRVEAdgppvrtVVHTAGVAQTTP 1292
                  5899999999999999999986.4444444255542233344445555655545999******9999888865432222222888888877654 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00013
   3Beta_HSD    1 vvtGgaGFlGralvkeLvrleelkev.....rvlDlrespelleelskvnvkk.viegDvtdkdkleealegvd......vvihlaslvd..vagkl 83  
                  +v G++G lG+ l+++Lv +++++++     r  D +  + ll +l+ ++ +  ++ +D+ d d + ++l  vd      +v+h a++ d  v   +
  KIR65896.1 3314 LVSGATGTLGALLCRHLVTAHDARQLllvsrRGPDAEGADALLADLKALGADVsIVAADLADPDAVADVLSMVDarhplrAVVHAAGVLDdgVLESM 3410
                  699*******************9998333434457999999999***999987799*********99999887633333369999999885555678 PP

   3Beta_HSD   84 tedeimkv...nvkGTrnvleacvkagvrvlvYtSsaevvgp 122 
                  t d++  v    v    n+  a v ++++++v  S+a  v++
  KIR65896.1 3411 TPDRLAAVlrpKVDAAWNLHRATVGHELTAFVLFSAAAGVFG 3452
                  888877774446999999999999999999999998888876 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   1.0     0.059        44     124     240 .]     654     758 ..     623     758 .. 0.82
   2 ?    1.2   0.8      0.33   2.5e+02     104     128 ..    2193    2217 ..    2183    2239 .. 0.84
   3 ?   11.1   0.0   0.00031      0.23     191     239 ..    2253    2301 ..    2246    2302 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.059
         SAT 124 kslseLvplaveavrvafrlGlevarvaarleegsssssesWslavtglseeelekalaefneekglppasrvyisavssss.vtisGpPstleallks 221
                 +s+ e+v++ v  v ++   +++va++ + ++   +  ++  +lav+ +se+e+ + la ++   g        i+av++++ v++sG  s+++++   
  KIR65896.1 654 HSIGEVVAAHVAGVFTLADACALVAARGRLMQ---ALPPGGAMLAVA-ASEAEVVESLAGVTGPVG--------IAAVNGPTsVVVSGAASAVDEVAGL 740
                 78888888888888889999999999888888...222345677777.688888888888888777........999999888********99998888 PP

         SAT 222 skakkkkkksklpiyapyH 240
                  +a   k++ +l+++ ++H
  KIR65896.1 741 WAARGVKTR-RLKVSHAFH 758
                 877777766.898888888 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.33
         SAT  104 stylvGlCtGllaAaavacskslse 128 
                  +  +vG+++G + Aa+va   sl++
  KIR65896.1 2193 PQAVVGHSQGEIGAACVAGILSLED 2217
                  4679*************98877765 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00031
         SAT  191 ppasrvyisavssss.vtisGpPstleallksskakkkkkksklpiyapy 239 
                  p+   v ++av+++s v++sGpP+ +++l++ ++a+  + +  +p+  + 
  KIR65896.1 2253 PAFPGVGVAAVNGPStVVVSGPPQPVADLVDACQADGIRAR-LIPVDYAS 2301
                  555667899***9999*******************999987.68876655 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1       0.3   2.2e+02       3      35 ..     201     233 ..     199     247 .. 0.85
   2 ?    8.5   0.4    0.0024       1.8       3      40 ..    1744    1781 ..    1742    1812 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.3
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEE CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigae 35 
                  + +aCs+  +a+++A +++++ ++  +L  ga 
   KIR65896.1 201 VDTACSSSSVAVHLACQALRQRECGLALAGGAT 233
                  5689****************9888777766665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0024
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGC CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlski 40  
                   + +aCs+ ++al++A ++++ g++  +L  g  +++  
   KIR65896.1 1744 VDTACSSSLVALHLAVQALRRGECDLALAGGVTVMTTP 1781
                   578*********************99998777777664 PP

>> DUF3864  Domain of Unknown Function with PDB structure (DUF3864)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.73   5.5e+02      14      54 ..     906     949 ..     902     955 .. 0.78
   2 ?    7.8   0.1    0.0056       4.2       4      44 ..     968    1008 ..     964    1010 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.73
                 --EEEEEEESSS--------BTTB---B...----SSB-TT--S CS
     DUF3864  14 payvidftrydlkakepadpspekpakd...wsllnkinqkglr 54 
                 p+y  +   y ++a+ p+dp+ +  a d   w+ +++ +  +lr
  KIR65896.1 906 PTYPFERQHYWVPAEAPTDPATGTGALDhrfWDAVERADLDALR 949
                 555566678999**********9999775557777777777777 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0056
                  EEEETTSTT---EEEEEEESSS--------BTTB---B--- CS
     DUF3864    4 llrdwhqknapayvidftrydlkakepadpspekpakdwsl 44  
                   l dw ++     v+d  ry  + +  a+p+p++ a  w l
  KIR65896.1  968 ALADWRRQRQEHTVLDGWRYRAEWQVTAEPAPGRLAGAWLL 1008
                  589**********************************9976 PP

>> YAcAr  YspA, cpYpsA-related SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.021        16      29      57 ..     722     748 ..     717     754 .. 0.82
   2 ?    6.5   0.1     0.011         8      25      59 ..    1191    1225 ..    1166    1229 .. 0.76
   3 ?   -1.9   0.4       4.5   3.3e+03      29      56 ..    3123    3149 ..    3116    3152 .. 0.84
   4 ?   -0.7   0.1       1.9   1.4e+03       9      36 ..    3371    3397 ..    3366    3400 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.021
       YAcAr  29 pidmvlvhGgakGaDrlAarWAaergvel 57 
                 p   v+v+G+a+ +D  A  WAa rgv++
  KIR65896.1 722 P-TSVVVSGAASAVDEVAGLWAA-RGVKT 748
                 6.589*****************7.56665 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.011
       YAcAr   25 haeapidmvlvhGgakGaDrlAarWAaergvelvr 59  
                  ++  p+  +l++Gg+ G  + AarW a+ g e+v+
  KIR65896.1 1191 RRYTPTGTALITGGTGGLGARAARWLAAAGAEHVV 1225
                  444566899******************99998875 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4.5
       YAcAr   29 pidmvlvhGgakGaDrlAarWAaergve 56  
                  + + vlvh +a G+   A + A++ g e
  KIR65896.1 3123 G-ESVLVHAAAGGVGMAAVQIARHLGAE 3149
                  5.689*************9999987765 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.9
       YAcAr    9 rdfadleliwatLdklhaeapidmvlvh 36  
                  +d ad +++ + L  + a++p   ++vh
  KIR65896.1 3371 ADLADPDAVADVLSMVDARHPL-RAVVH 3397
                  5678999**************7.88887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 1.42u 0.35s 00:00:01.77 Elapsed: 00:00:00.53
# Mc/sec: 21454.10
//
Query:       KIR65897.1  [L=4820]
Description: beta-ketoacyl synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.9e-271  895.8  29.4    1.6e-92  309.6   2.3    6.6  6  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
   1.7e-225  747.4  14.7    1.1e-91  307.7   1.7    3.6  3  Acyl_transf_1    Acyl transferase domain
   9.3e-175  576.3  32.6    1.8e-61  207.2   2.3    4.9  5  KR               KR domain
   4.6e-137  449.2  14.2    7.8e-46  154.9   0.4    4.2  3  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    1.3e-47  160.9   0.0    5.5e-16   59.0   0.0    3.6  3  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    4.6e-44  148.6   0.0    2.6e-14   53.3   0.0    3.8  3  PP-binding       Phosphopantetheine attachment site
    1.1e-35  122.9  13.9    1.5e-11   44.1   0.2    5.1  5  adh_short        short chain dehydrogenase
      2e-33  114.7  34.1    1.2e-13   51.4   5.5    8.6  5  PKS_DE           Polyketide synthase dimerisation element dom
    6.2e-23   81.5  10.7    1.2e-07   31.5   0.6    3.6  3  Epimerase        NAD dependent epimerase/dehydratase family
    2.2e-22   79.7  13.0    1.3e-07   31.3   0.1    4.4  3  Thiolase_N       Thiolase, N-terminal domain
    1.3e-18   67.6   0.0    2.7e-05   23.7   0.1    3.3  3  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.7e-14   53.7   0.0    0.00027   20.2   0.0    3.2  3  Polysacc_synt_2  Polysaccharide biosynthesis protein
    1.7e-08   33.9   9.3    6.1e-08   32.1   9.3    2.1  1  Docking          Erythronolide synthase docking
    4.5e-07   29.7  10.1      0.035   13.6   0.4    3.4  3  NmrA             NmrA-like family
    9.2e-07   28.1   0.0     0.0021   17.1   0.0    3.2  3  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    2.7e-06   27.3  13.1       0.35   10.6   0.0    5.3  3  SAT              Starter unit:ACP transacylase in aflatoxin b
    0.00065   18.9  11.0       0.21   10.6   0.3    3.4  3  RmlD_sub_bind    RmlD substrate binding domain
     0.0013   18.7   5.9     0.0013   18.7   5.9    6.0  5  NAD_binding_10   NAD(P)H-binding
     0.0054   15.9   3.5        1.6    7.8   0.1    3.3  3  NAD_binding_4    Male sterility protein
  ------ inclusion threshold ------
      0.031   14.1  16.1       0.68    9.8   0.7    5.0  4  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
       0.06   13.9   7.4        5.8    7.6   0.2    4.3  3  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
       0.14   11.8   5.8        4.8    6.9   0.1    3.7  3  GBP_PSP          Paralytic/GBP/PSP peptide
       0.87   10.0   4.6        8.3    6.9   0.2    3.4  3  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.1   0.6   1.1e-90   8.8e-88       2     253 .]      35     284 ..      34     284 .. 0.98
   2 !  305.6   0.4   3.5e-94   2.8e-91       2     253 .]    1635    1885 ..    1634    1885 .. 0.97
   3 ?    1.7   0.1       0.2   1.6e+02      95     148 ..    1921    1975 ..    1918    2000 .. 0.64
   4 !  309.6   2.3   2.1e-95   1.6e-92       2     253 .]    3206    3456 ..    3205    3456 .. 0.98
   5 ?    0.8   0.1      0.38     3e+02      95     138 ..    3492    3542 ..    3490    3569 .. 0.56
   6 ?   -2.3   0.1       3.5   2.7e+03      96     134 ..    3819    3863 ..    3804    3897 .. 0.61

  Alignments for each domain:
  == domain 1  score: 294.1 bits;  conditional E-value: 1.1e-90
                    --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllle 94 
                    ep+aiv+m++r+Pgg+  +e++w+l+++g+d+i+++padr wd d+l++p+++ +g+++++ ggf+  ++dfd+ +fgisprea amdpqqrllle
     KIR65897.1  35 EPIAIVAMSCRYPGGVAsPEQLWDLVRDGGDGIGPFPADRgWDLDRLFHPDPDHPGTSYVSEGGFVYdAADFDADLFGISPREALAMDPQQRLLLE 130
                    79**************99****************************************************************************** PP

                    HHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt  95 aawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslr 190
                    +awe +e+agl+ ++++gsr+gvf+G++++ y+++ a+ e+g   +++   +g+ +++vi+gr++y+lgl+Gp+vtvdtACsSslva+h+a q lr
     KIR65897.1 131 TAWESFERAGLPVATMRGSRTGVFVGAASHGYDGIMAQAENG---EGHL-LTGN-ATSVISGRVAYTLGLEGPAVTVDTACSSSLVAIHLAAQGLR 221
                    ********************************8877777665...6777.9999.***************************************** PP

                    TTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    +g++++alaGGv+++ tp  ++gfs+++ l++dgrckaf+++adG+ ++EGvG+++L rl+da
     KIR65897.1 222 NGDCELALAGGVTVMPTPAVFVGFSRQRGLAADGRCKAFAAAADGTSWSEGVGMLLLARLSDA 284
                    *************************************************************98 PP

  == domain 2  score: 305.6 bits;  conditional E-value: 3.5e-94
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     epvaiv m++rfPgg++ +e++w+lL +g da++ +p +r w+  +ly+p+++  g+++++ ggf++ + +fdp+ffgisprea amdpqqrll
     KIR65897.1 1635 EPVAIVSMSCRFPGGVSsPEQLWDLLADGTDAMTLMPGERgWNIAELYHPDPEHLGTSYVREGGFVAgAGEFDPAFFGISPREALAMDPQQRLL 1728
                     89******************************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     lea+wea+e+a ++p++l+gsr+gv++G++ +dy+ l +     ++v+ +  a+g+ +a+vi+gr+sy++gl+Gp+vtvdtACsSslva+h+a 
     KIR65897.1 1729 LEATWEAFERARIDPTALRGSRTGVYVGTNGQDYGSLLMAA---GDVDENYLATGT-SASVISGRLSYTFGLHGPAVTVDTACSSSLVALHLAA 1818
                     **********************************7644444...457777779**9.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     q+l++ge+d+alaGG++++ tp+ ++gfs+++ l++dgrck+f+ +adG+ +GEGvG++vL+rl+da
     KIR65897.1 1819 QALQAGECDLALAGGATVMATPGIFVGFSRQRGLAADGRCKPFAGAADGTGWGEGVGLLVLQRLSDA 1885
                     *****************************************************************98 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.2
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTT.GGGSCTTHHHH CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgs.evkaspkavga 148 
                     + ++al++aglt++++d  +   +g ++G  ++ +a la++    + +  ++p ++g+
     KIR65897.1 1921 VIRQALANAGLTADQVDAVEahgTGTTLGDPIEAQALLATYG---QdRPADRPLWLGS 1975
                     6789************77776679999999998664333333...3223444444444 PP

  == domain 4  score: 309.6 bits;  conditional E-value: 2.1e-95
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     epvaiv+m++rfPgg   +e fw++L +grda+s+lp dr wd d+lydp++   g+++++ g+fl  ++dfd++ffgisprea amdpqqrll
     KIR65897.1 3206 EPVAIVAMSCRFPGGAVdPERFWQMLHAGRDAVSDLPGDRgWDIDRLYDPDPYSSGTSYVRSGAFLYeAADFDAAFFGISPREAMAMDPQQRLL 3299
                     89***********98766**************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     lea+wea+e+ag++p+ l+gsr+gvf+G++ +dy+al +   d+  v+++   +g+ +a+v++gr++yalgl+Gp+v+vdtACsSslva+h+av
     KIR65897.1 3300 LEASWEAVERAGVDPAGLRGSRTGVFVGTNGQDYGALLMVAVDE--VEGFA-GTGN-AASVVSGRVAYALGLEGPAVSVDTACSSSLVALHLAV 3389
                     **********************************9998888777..79999.9**9.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     q+lr+ge+d+alaGGv+++ tp+ ++ fs+++ l++dgrckaf+++adG+ +GEGvG+++++rl+da
     KIR65897.1 3390 QALRRGECDLALAGGVTVMATPGLFVEFSRQRGLAADGRCKAFAAGADGTGWGEGVGVLLVERLSDA 3456
                     *****************************************************************98 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.38
                     HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTT.......G CS
  ketoacyl-synt   95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgs.......e 138 
                     + ++al++agl+p+e+d  +   +g ++G  ++ +a   +l  +g+        
     KIR65897.1 3492 VIRQALASAGLSPAEVDVVEahgTGTTLGDPIEAQA---LLATYGQgretpllL 3542
                     6789***********954444459999998888663...333333212344321 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 3.5
                     HHHHHHHHTS-HHTCTTGG.....EEEEEEESSTHH.HHHHHHHH CS
  ketoacyl-synt   96 awealedagltpeeldgsr.....vgvfiGvgagdy.aalaalde 134 
                      +  +e+ag++p+++ g +     +++++G+ + d  a+++al++
     KIR65897.1 3819 LAAVWEHAGVSPQAVVGHSqgeigAACVAGILSLDDaAKTVALRS 3863
                     567899******999777745544444445444433244444443 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.4   0.9   1.5e-55   1.2e-52       3     317 ..     566     889 ..     565     891 .. 0.94
   2 !  307.7   1.7   1.4e-94   1.1e-91       2     316 ..    2165    2483 ..    2164    2486 .. 0.96
   3 !  267.9   0.3   1.8e-82   1.4e-79       1     316 [.    3747    4061 ..    3747    4064 .. 0.98

  Alignments for each domain:
  == domain 1  score: 179.4 bits;  conditional E-value: 1.5e-55
                    EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHH CS
  Acyl_transf_1   3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGE 94 
                    +fsGqG+Q aGMG+eL+++ ++fa v+++   ++       +  vl + p     +lld+++f+q +L+av++al+ l +s+Gv p+ v GHS+GE
     KIR65897.1 566 LFSGQGAQRAGMGRELYASFPVFASVLDEVCGHLDRALPQPLKPVLFAGPGsaeaSLLDSTVFTQAGLFAVEVALFRLVESFGVVPDFVGGHSVGE 661
                    6**********************************************999988889**************************************** PP

                    HHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS........HHHHHHH....TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CC CS
  Acyl_transf_1  95 lAaavvagalsseeallavvlrsrlmmqlagpgdmaavel.......aeeeeklr..cqddvvgavansprrvvisgsqealrelvervskegvga 181
                    + aa+vag ls+e a   v+ r+rlm+ l   g+m+av+        +   ++ r    d+v  a++n+p +vv+sg  +al+ + + ++ +gv+ 
     KIR65897.1 662 IVAAHVAGVLSLEHACALVAARGRLMQALPAGGGMLAVNAaesdvlaSLDGLASRdgLSDRVGIAAVNGPASVVVSGAVDALDVVEQAWRGRGVRT 757
                    **************************************996655554223344454579************************************* PP

                    EEECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHH.HHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCC CS
  Acyl_transf_1 182 lvenvnvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsa.eywvanlrspvrfaeavlsaaetiplvfveispHslllaale 276
                    ++ +v+ a+hsp ++++  + ++ l  ++   p+++  s ++   +++ e+ + +ywv+ +r++vrfa+ v++++  + ++f+e+ p s+l+a   
     KIR65897.1 758 RRLAVSHAFHSPLMEPMLAKFRAVLSRLTFAAPELPVVSNVTGALADPDEIRGvDYWVRHVREAVRFADGVAALRSAGVDTFLEVGPQSVLTALTA 853
                    ************************************************9998758***************************************** PP

                    CCCHHGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT- CS
  Acyl_transf_1 277 ktlksaedvksatlvGklkrdltdflvtflyllakahltgs 317
                    ++l    ++++ +++   +rd  + ++ +l++la++h+ g+
     KIR65897.1 854 EALP---EASVLAVAA-QRRDRPE-VSGLLAALAELHVNGV 889
                    ****...577777777.8999999.************9997 PP

  == domain 2  score: 307.7 bits;  conditional E-value: 1.4e-94
                     EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T.TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHH CS
  Acyl_transf_1    2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe.glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGE 94  
                     fvf+GqGsQw GM++eLl+t ++fa++ a+++ea+++  ++s  dv+r +p  + l+++++vqp L+av ++la+l++s+GvrpaavvGHS+GE
     KIR65897.1 2165 FVFPGQGSQWVGMAAELLDTAPVFADTFAACAEALRPYVDWSPVDVVRGAPDaPSLERVDVVQPTLFAVGVSLAALWQSYGVRPAAVVGHSQGE 2258
                     9***********************************************8876489*************************************** PP

                     HHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH...TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEEC CS
  Acyl_transf_1   95 lAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklr.cqddvvgavansprrvvisgsqealrelvervskegvgalven 185 
                     +Aaa+vagal++ +a+ +v+lrsr+++ +ag+g+m +v+   +e +  ++ ++ +v +a++n+p +vv+sg ++al+elv++ ++++ +++++ 
     KIR65897.1 2259 IAAAYVAGALTLDDAAAVVALRSRIIAGIAGDGGMVSVATtaDEATATIArWDGRVALAAVNGPTSVVVSGDSAALDELVAHYEARETRVRRVP 2352
                     ***************************************976444444445******************************************* PP

                     CCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCC CS
  Acyl_transf_1  186 vnvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektl 279 
                     v++a+hs+ v++++++l   la +apr+ ++ ++s+++ d  ++  l+a+yw++nlr++vrf+eav+s+++ ++++fve+s+H++l++a+++ +
     KIR65897.1 2353 VDYASHSAHVEPLREQLVDLLAGLAPRTGEIRFWSTVTGDWLDTAGLDADYWYRNLRQTVRFDEAVRSLVAAGYQTFVEVSAHPVLTMAVQESV 2446
                     ********************************************************************************************** PP

                     HH.GGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT CS
  Acyl_transf_1  280 ks.aedvksatlvGklkrdltdflvtflyllakahltg 316 
                     +  a+d    t+ G+l+r+ +d l +f ++ a++++ g
     KIR65897.1 2447 ELaAADPGAVTVTGTLRRNEGD-LGRFHRAVAEVFTGG 2483
                     98677888899***********.999999999888877 PP

  == domain 3  score: 267.9 bits;  conditional E-value: 1.8e-82
                     EEEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHH CS
  Acyl_transf_1    1 vfvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpeglldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGE 94  
                     vfvf+GqG+Q a M++ L    ++f a++a++ +a+++  +  +  vl+  +e+ l+++++vqp+L av iala++++ +Gv p avvGHS+GE
     KIR65897.1 3747 VFVFPGQGAQSARMAAGLVGRTPVFDAKLAECQRALAPFLDVDLISVLTGDDESWLERVEVVQPVLWAVGIALAAVWEHAGVSPQAVVGHSQGE 3840
                     8********************************************************************************************* PP

                     HHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECC CS
  Acyl_transf_1   95 lAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalvenv 186 
                     + aa vag ls+ +a++ v+lrsr  + l g g+ma+v l  ++++ +l+ ++ v +a++n+p++vv+sg+++++++lv+ ++ eg++a+ + v
     KIR65897.1 3841 IGAACVAGILSLDDAAKTVALRSRALAVLRGTGAMASVDLsaDAVTARLAAFPGVGVAAVNGPGTVVVSGPPQPVADLVQACQDEGIRARLIPV 3934
                     ****************************************9889999999******************************************** PP

                     CEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCH CS
  Acyl_transf_1  187 nvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlk 280 
                     ++a+hsp v+++a+ l+++lad+ap++ +v   s+++ d  ++ ++ a+yw++nlr++v+f++av+ a++ ++ +fveispH++l++ +   l+
     KIR65897.1 3935 DYASHSPSVQDVAERLRADLADVAPQPGRVRLVSTLTGDWVDPATMTADYWYDNLRQTVQFDAAVRVAIAAGHSTFVEISPHPVLTMPVTAILD 4028
                     ********************************************************************************************** PP

                     HGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT CS
  Acyl_transf_1  281 saedvksatlvGklkrdltdflvtflyllakahltg 316 
                       + +++   +G+l+r+ +d   ++l++la+ah +g
     KIR65897.1 4029 --DAGATGYTLGSLRRGDDD-PTRLLTNLATAHAIG 4061
                     ..788999999*********.************988 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.9   5.8     2e-58   1.5e-55       1     179 [.    1279    1452 ..    1279    1453 .. 0.98
   2 ?   -1.9   0.1       3.4   2.7e+03      46      86 ..    2651    2692 ..    2635    2694 .. 0.73
   3 !  197.1   2.2   2.9e-61   2.3e-58       1     179 [.    2831    3008 ..    2831    3009 .. 0.98
   4 ?   -3.0   0.0       7.6   5.9e+03      40      76 ..    4191    4229 ..    4184    4236 .. 0.75
   5 !  207.2   2.3   2.3e-64   1.8e-61       1     179 [.    4381    4558 ..    4381    4559 .. 0.99

  Alignments for each domain:
  == domain 1  score: 187.9 bits;  conditional E-value: 2e-58
                  SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------T CS
          KR    1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkll 97  
                  gt+l+tGG+G+LG+++arwl+++ga+++vl sR++++ + +++li+el+ +ga v+vva+Dv+d++av al++ +    p+++ v+h+Ag+++d+ l
  KIR65897.1 1279 GTVLVTGGTGALGRHTARWLLANGAAEVVLASRRGPEAPGAAELIEELRGTGA-VRVVACDVTDAAAVDALVAGL----PALTAVVHTAGIVDDGVL 1370
                  89************************************************996.9******************99....69**************** PP

                  TT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   98 eemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  + ++ +++++vla K ++a++Lh +++ ++ld fvlfSS+ag++gsagq+nYaaaNa+lDa+a++r++qglpa++++wg+wa
  KIR65897.1 1371 DGLDVDRMQAVLAGKATAARVLHDATAGRDLDAFVLFSSLAGVVGSAGQGNYAAANAYLDAFAAWRHAQGLPATAVAWGAWA 1452
                  *********************************************************************************7 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.4
                  HHHHHTT-EEE..E----TT-HHHHHHHHHHHHHHSS---EEE CS
          KR   46 aelealgaeve..vvaaDvsdkdavealleeikaeeppikGvi 86  
                  ++l+++ga+v   ++aaD +d+da++a l+++ a++ p +G++
  KIR65897.1 2651 DALARRGATVVpvALAADRTDRDALAARLRDLAATH-PAAGIV 2692
                  578889999972255789999999999999998665.667776 PP

  == domain 3  score: 197.1 bits;  conditional E-value: 2.9e-61
                  SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------T CS
          KR    1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkll 97  
                  gt l+tGG+G+LG ++arwla++ga+hlvllsR++++ +  ++l ael+ lga+v+v+a+D +d+da++a+++++ ae+ p++ v+h+A vl+d+ +
  KIR65897.1 2831 GTALVTGGTGALGGHMARWLAANGASHLVLLSRRGRQADGIAELEAELTGLGARVTVAACDAADRDALAAVIADLPAEH-PLTAVVHTAAVLDDSVI 2926
                  799*******************************999999999********************************9777.***************** PP

                  TT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   98 eemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  +++t ++++ +l++Kv++a nLhel++d++ld fvlfSS+ag++gs g +nYa +Nafl+alae+rr +glpa+si wg+w 
  KIR65897.1 2927 SSLTLDQVDYALSAKVTAALNLHELTRDHDLDAFVLFSSMAGTVGSSGVGNYAPGNAFLNALAEHRRGLGLPATSIGWGAWG 3008
                  *********************************************************************************6 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 7.6
                  HHHHHHHHHHHTT-EEEE-..---TT-HHHHHHHHHHHH CS
          KR   40 dskaliaelealgaevevv..aaDvsdkdavealleeik 76  
                  + +a +ael+++ga+v++v  + +++d++av+a l++++
  KIR65897.1 4191 EGEAAVAELTRRGADVRLVllPEELTDRAAVAAHLASAT 4229
                  44678999***9998776511679999999998887765 PP

  == domain 5  score: 207.2 bits;  conditional E-value: 2.3e-64
                  SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------T CS
          KR    1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkll 97  
                  gt l+tGG+G+LG e+arwla++ga+hl+l+sR++a  + +++l++el+  g++v+v+a+Dv+d++a+++ll+e+ a++ p++ v+haAgvl+d+ l
  KIR65897.1 4381 GTTLVTGGTGALGAEVARWLAARGAEHLLLVSRRGADAPGAAELVRELTGAGTRVTVAACDVADRAALAKLLAEVPADA-PLTAVVHAAGVLDDGVL 4476
                  899************************************************************************9777.***************** PP

                  TT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   98 eemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  + +ta+++++vl+pKv Ga +Lhel+  ++l  fvlfS +ag lg+agq++YaaaNa+lDalae+r++qglpa+si+wg+wa
  KIR65897.1 4477 DGLTADRIATVLRPKVLGALHLHELTVGRELRAFVLFSAMAGQLGAAGQGSYAAANAYLDALAEQRHRQGLPATSIAWGPWA 4558
                  *********************************************************************************7 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.2   0.6   1.2e-46   9.6e-44       1     117 [.     292     407 ..     292     408 .. 0.98
   2 !  154.9   0.4     1e-48   7.8e-46       1     117 [.    1893    2010 ..    1893    2011 .. 0.99
   3 !  152.9   1.4   4.1e-48   3.2e-45       1     117 [.    3464    3579 ..    3464    3580 .. 0.98

  Alignments for each domain:
  == domain 1  score: 148.2 bits;  conditional E-value: 1.2e-46
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      +av++gsavnsdga+n+l ap+g +q r+i++ala+a+++p dvd+veahgtgt+lgDpiE++al +++g+++ + pl +gSvKsniGH++aAa
       KIR65897.1 292 LAVVRGSAVNSDGASNGLSAPHGPSQVRVIRHALASARLSPVDVDVVEAHGTGTRLGDPIEAQALLATYGQGR-DTPLLLGSVKSNIGHTQAAA 384
                      69*********************************************************************99.88****************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      Gva++ik+v+a++hgv+pptl++
       KIR65897.1 385 GVAGVIKMVQAIRHGVVPPTLHV 407
                      **********************8 PP

  == domain 2  score: 154.9 bits;  conditional E-value: 1e-48
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       +a+++gsavn+dga+n+ltapng aq+r+i++ala+ag+++++vd veahgtgt+lgDpiE++al +++g+++  ++pl++gS+Ksn+GH++
       KIR65897.1 1893 LAIVRGSAVNQDGASNGLTAPNGPAQQRVIRQALANAGLTADQVDAVEAHGTGTTLGDPIEAQALLATYGQDRPaDRPLWLGSIKSNVGHTQ 1984
                       699*********************************************************************99*9**************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaGva++ik+vla++hgv+pptl++
       KIR65897.1 1985 AAAGVAGVIKMVLAMRHGVLPPTLHV 2010
                       *************************8 PP

  == domain 3  score: 152.9 bits;  conditional E-value: 4.1e-48
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GG CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHlea 92  
                       +av++gsavn+dga+n+ltapng +q+r+i++ala+ag++p++vd+veahgtgt+lgDpiE++al +++g+++ + pl +gSvKsniGH++a
       KIR65897.1 3464 LAVVRGSAVNQDGASNGLTAPNGPSQQRVIRQALASAGLSPAEVDVVEAHGTGTTLGDPIEAQALLATYGQGR-ETPLLLGSVKSNIGHTQA 3554
                       69*********************************************************************99.88**************** PP

                       GHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   93 AaGvaelikvvlalkhgvipptlnl 117 
                       AaGva++ik+vla+++gv+p+tl++
       KIR65897.1 3555 AAGVAGIIKMVLAMQEGVVPATLHV 3579
                       ************************8 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   4.5e-15   3.5e-12       1     104 [.     410     519 ..     410     528 .. 0.86
   2 !   59.0   0.0     7e-19   5.5e-16       1     111 [.    2013    2129 ..    2013    2130 .. 0.88
   3 !   51.1   0.0   2.1e-16   1.6e-13       1     111 [.    3582    3710 ..    3582    3711 .. 0.91

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 4.5e-15
  KAsynt_C_assoc   1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk..eeslprL.lvlsgrteeaveallekleehllda 88 
                     P+++i+ ++ g +++ te+ pwp       ++v+sfG++G+n+H i++++++++++ e+    + lp + ++ls+rt++a+ a++ + +++l+ +
      KIR65897.1 410 PSQHID-WSAGAVELATEARPWPAVDrprrAAVSSFGVSGTNAHTIIEQAPEPEATVETVapGRALPAVpVLLSARTDAALAAQAGRWAARLDAD 503
                     99****.***************99888999*********************9988888776655666544999******************9999 PP

  KAsynt_C_assoc  89 ellsllneilseeisr 104
                     ++ + ++ + s+ ++r
      KIR65897.1 504 ADARPVDVAWSSVTAR 519
                     9999988888777666 PP

  == domain 2  score: 59.0 bits;  conditional E-value: 7e-19
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk.eeslprLlvlsgrteeaveallekleehllda 88  
                      P p+++ ++ g + + te+ pw+       +gv+sfG++G+nvH iL+++++e+++ee+   + +   +vlsgrt++a+ a + +l++hl++ 
      KIR65897.1 2013 PTPHVD-WSAGHVALLTEARPWEPADgvrrAGVSSFGISGTNVHTILEQAPEEEAPEEQAaAPARELPWVLSGRTADALAARARDLADHLDTV 2104
                      99****.***************87767789*********************9999999884556666699*******************9999 PP

  KAsynt_C_assoc   89 ellsllneilseeisr..lpyRGya 111 
                      ++ +l++   s   +r  +++R+ +
      KIR65897.1 2105 ADDALADVGWSLVDTRaaHDHRAVV 2129
                      9999988888776666669999876 PP

  == domain 3  score: 51.1 bits;  conditional E-value: 2.1e-16
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk.............eeslprLlvlsgrteeavea 76  
                      P+p+i+ ++ g +++ te+tpwp++      +v+sfG++G+n+HviL+ ++   ++e+++              +   +++++s+r+++a+  
      KIR65897.1 3582 PSPHID-WSAGAVELATEATPWPQTGrarrSAVSSFGISGTNAHVILELPDDLPAAEATDtgpgsdgaggpglVAAGVTVWPVSARSKAALAG 3673
                      99****.***************99888999*********************877777777788999****999999***************** PP

  KAsynt_C_assoc   77 llekleehlldaellsllneilseeisr..lpyRGya 111 
                      ++++l+ hl+++ +++ ++   s +++r  ++ R+ +
      KIR65897.1 3674 QAARLAWHLREHGDVEPAAVGWSLATTRstFDQRAAV 3710
                      *************999999888888877667777665 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   3.3e-17   2.6e-14       2      67 .]    1545    1610 ..    1544    1610 .. 0.96
   2 !   43.8   0.0   3.1e-14   2.4e-11       3      67 .]    3118    3183 ..    3116    3183 .. 0.92
   3 !   47.1   0.0   2.9e-15   2.2e-12       3      67 .]    4668    4733 ..    4666    4733 .. 0.91

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 3.3e-17
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   +r+ +a vlg p+ +  p+ +++dlG+DSl+avel ++l +e g ++p + +f+hpt+aelaa+l
  KIR65897.1 1545 LVRTQAAVVLGYPAGRPLPERTFRDLGFDSLTAVELRNRLTAETGMTLPATLVFDHPTVAELAAHL 1610
                  58899999********88**********************************************97 PP

  == domain 2  score: 43.8 bits;  conditional E-value: 3.1e-14
  PP-binding    3 lrelvaevlgvplee.idpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +r  +a+vl+ +  + +dp++ ++dlG+DS++avel ++l  + g+++p++ +f++pt+  la++l
  KIR65897.1 3118 VRGQAATVLKYAGGDaVDPHHAFRDLGFDSVTAVELRNRLATATGLRLPVTLVFDYPTPTVLARHL 3183
                  7888999***96666489*********************************************997 PP

  == domain 3  score: 47.1 bits;  conditional E-value: 2.9e-15
  PP-binding    3 lrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +r  +a vlg  + ++++pd  +++lG+DSl+avel ++l ++ gv++p +++f++pt a la+y+
  KIR65897.1 4668 VRGQAAAVLGHaSMDAVEPDRAFRELGFDSLTAVELRNRLTAATGVRLPATVVFDYPTAAGLAEYV 4733
                  677788899976677789**********************************************97 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   1.9   1.2e-13   9.3e-11       2     160 ..    1280    1433 ..    1279    1446 .. 0.82
   2 ?   -2.6   0.0       4.1   3.2e+03      23      69 ..    2320    2367 ..    2315    2376 .. 0.77
   3 !   41.3   0.2   1.4e-13   1.1e-10       2     161 ..    2832    2990 ..    2831    2994 .. 0.86
   4 ?   -0.5   0.0      0.94   7.3e+02      24      76 ..    3902    3955 ..    3897    3958 .. 0.83
   5 !   44.1   0.2   1.9e-14   1.5e-11       3     164 ..    4383    4543 ..    4381    4565 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1.2e-13
                  EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGG CS
   adh_short    2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfse 95  
                  +vlvtG+++ +Gr +a+ l+++Ga  vv ++r+  ++  +a+ ++e+     + ++++Dvtd+++v+alv+        l ++v+ AGi  +g    
  KIR65897.1 1280 TVLVTGGTGALGRHTARWLLANGAAEVVlASRRGPEAPGAAELIEELrgTGAVRVVACDVTDAAAVDALVAGL----PALTAVVHTAGIVDDGVLDG 1372
                  79*********************987773666665555555555555756789***********999999887....99**********98898888 PP

                  CSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHH CS
   adh_short   96 lseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavaglt 160 
                  l+ +++++v++   t++  l  a       +   + v  sS ag v++ag+  Y+A+ a +++++
  KIR65897.1 1373 LDVDRMQAVLAGKATAARVLHDAT----AGRDLDAFVLFSSLAGVVGSAGQGNYAAANAYLDAFA 1433
                  888888888777776665555554....345666899********************99888886 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.1
                  TT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHH.HHHHHHH CS
   adh_short   23 eGakvvvvdrseekleevakelkeegakalaiqvDvtdre.evealve 69  
                  +G + vvv+  +++l e++++ ++ ++++  ++vD ++++  ve l e
  KIR65897.1 2320 NGPTSVVVSGDSAALDELVAHYEARETRVRRVPVDYASHSaHVEPLRE 2367
                  67778888999999*********************9955504454544 PP

  == domain 3  score: 41.3 bits;  conditional E-value: 1.4e-13
                  EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGG CS
   adh_short    2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee....gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfs 94  
                  ++lvtG+++ +G  +a+ la++Ga+++v+ ++  + +  ++el++e    ga+++++++D +dr+++ a++++  +++ +l ++v+ A++  ++ +s
  KIR65897.1 2832 TALVTGGTGALGGHMARWLAANGASHLVLLSRRGRQADGIAELEAEltglGARVTVAACDAADRDALAAVIADLPAEH-PLTAVVHTAAVLDDSVIS 2927
                  69***********************9995444444445555555544555************************9886.7999************** PP

                  GCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHH CS
   adh_short   95 elseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltr 161 
                  +l+ ++++  ++  +t++++l ++  ++       + v  sS+ag v++ gv  Y+   a++++l++
  KIR65897.1 2928 SLTLDQVDYALSAKVTAALNLHELTRDH----DLDAFVLFSSMAGTVGSSGVGNYAPGNAFLNALAE 2990
                  *********************9998888....45678999***************998888888775 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.94
                  T-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTT.SHHHHHHHHHHHHHHHS CS
   adh_short   24 GakvvvvdrseekleevakelkeegakalaiqvDvt.dreevealvekavkklg 76  
                  G  +vvv+  +++++ +++ +++eg +a  i+vD + ++ +v+++ e+ +++l 
  KIR65897.1 3902 GPGTVVVSGPPQPVADLVQACQDEGIRARLIPVDYAsHSPSVQDVAERLRADLA 3955
                  55677888889999*********************9667789999988887765 PP

  == domain 5  score: 44.1 bits;  conditional E-value: 1.9e-14
                  EEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHH...HHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGG CS
   adh_short    3 vlvtGassGIGraiakelakeGakvvv.vdrseekl...eevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfse 95  
                   lvtG+++ +G ++a+ la++Ga++++ v+r+ +++   +e++ el  +g++++++++Dv+dr+++ +l++++ ++  +l ++v+ AG+  +g    
  KIR65897.1 4383 TLVTGGTGALGAEVARWLAARGAEHLLlVSRRGADApgaAELVRELTGAGTRVTVAACDVADRAALAKLLAEVPAD-APLTAVVHAAGVLDDGVLDG 4478
                  69***********************999999988762226666666666************************877.68****************** PP

                  CSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHH CS
   adh_short   96 lseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrsla 164 
                  l+++++  v+   + g+++l ++ +      +  + v  s +ag+ + ag+ +Y+A+ a +++l+++ +
  KIR65897.1 4479 LTADRIATVLRPKVLGALHLHELTVGR----ELRAFVLFSAMAGQLGAAGQGSYAAANAYLDALAEQRH 4543
                  *******************99986544....44578999*****************9998888887655 PP

>> PKS_DE  Polyketide synthase dimerisation element domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   3.4     4e-15   3.1e-12       1      43 [.     936     982 ..     936     983 .. 0.90
   2 !   51.4   5.5   1.5e-16   1.2e-13       1      44 [.    2533    2582 ..    2533    2582 .. 0.88
   3 ?   -0.4   0.1       2.3   1.8e+03       5      14 ..    3304    3313 ..    3301    3318 .. 0.85
   4 !   50.9   9.3   2.1e-16   1.6e-13       1      45 []    4106    4153 ..    4106    4153 .. 0.93
   5 ?   -1.7   1.2       5.7   4.4e+03       9      32 ..    4441    4465 ..    4438    4467 .. 0.79

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 4e-15
      PKS_DE   1 DaaFWaaVereDlaaLaatLgldada....sLsavLPaLsaWRrrrr 43 
                 + +FWaaVer+Dl+++a+ L++++d     +L++++P+Ls+WRr r+
  KIR65897.1 936 EGDFWAAVERGDLTEVASHLAVQDDPaaieALAPAVPVLSSWRRARQ 982
                 568*******************54446799***************98 PP

  == domain 2  score: 51.4 bits;  conditional E-value: 1.5e-16
      PKS_DE    1 DaaFWaaVereDlaaLaatLgl..dada......sLsavLPaLsaWRrrrre 44  
                  Da+FWaaVe++DlaaL+a+L+   d         ++++vLPaL+aWRrr+r+
  KIR65897.1 2533 DARFWAAVENGDLAALTAELADatD--GgtvpeaAFADVLPALTAWRRRHRD 2582
                  9********************9552..34577779***************96 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 2.3
      PKS_DE    5 WaaVereDla 14  
                  W+aVer+ ++
  KIR65897.1 3304 WEAVERAGVD 3313
                  ******9765 PP

  == domain 4  score: 50.9 bits;  conditional E-value: 2.1e-16
      PKS_DE    1 DaaFWaaVereDlaaLaatLgldada...sLsavLPaLsaWRrrrreR 45  
                  D+aFWaaVereDlaaLa+  + da++   +L+a+LP+L++WRr++reR
  KIR65897.1 4106 DSAFWAAVEREDLAALAELTAQDATDsleRLGAALPVLASWRRQQRER 4153
                  89***************999997666899******************9 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 5.7
      PKS_DE    9 ereDlaaLaatLgl.dadasLsavL 32  
                  + +D aaLa+ L+  +ada+L+av+
  KIR65897.1 4441 DVADRAALAKLLAEvPADAPLTAVV 4465
                  56899999999977677889*9997 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.6   1.5e-10   1.2e-07       1     115 [.    1281    1409 ..    1281    1429 .. 0.70
   2 !   30.9   0.3   2.3e-10   1.8e-07       1     116 [.    2833    2966 ..    2833    2980 .. 0.76
   3 !   24.3   0.2   2.3e-08   1.8e-05       2     114 ..    4384    4514 ..    4383    4551 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 1.5e-10
                  EEEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHHHH.T-SEEEE--S---HHHHHHSHH CS
   Epimerase    1 ilVtGatGfiGsalvkallekg.yevigldrlssasntarledl..........elveldltdrsalerlfkee.qpdavihlAavggvaassedpa 85  
                  +lVtG+tG +G+++++ ll++g  ev+  +r+  + + a  e l          ++v +d+td++a+++l++   + +av+h A++ + ++      
  KIR65897.1 1281 VLVTGGTGALGRHTARWLLANGaAEVVLASRRGPEAPGA-AE-LieelrgtgavRVVACDVTDAAAVDALVAGLpALTAVVHTAGIVDDGVLDGLDV 1375
                  79********************76677777774433322.22.23567**************************9********99655544444444 PP

                  HHHHHHTHHHHHHHHHHHHH....TCTEEEEEEE CS
   Epimerase   86 dfieknlqgtlnlleaarka....gvkrllflsS 115 
                  d +++ l+g  + + ++++a    +++ ++ +sS
  KIR65897.1 1376 DRMQAVLAGKATAARVLHDAtagrDLDAFVLFSS 1409
                  4444444444444444443311115556776666 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 2.3e-10
                  EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC...........EEEE--TT-HHHHHHHHH....HHT-SEEEE--S---HHH.. CS
   Epimerase    1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledl...........elveldltdrsalerlfk....eeqpdavihlAavggvaa.. 79  
                  +lVtG+tG +G ++++ l+++g   ++ l+r+ ++     +++l           ++  +d  dr+al+++++    e+  +av+h Aav + ++  
  KIR65897.1 2833 ALVTGGTGALGGHMARWLAANGAShLVLLSRRGRQADG--IAELeaeltglgarvTVAACDAADRDALAAVIAdlpaEHPLTAVVHTAAVLDDSVis 2927
                  59********************6658888877444333..33334478******************9888776222157889*******55544311 PP

                  ..HHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEG CS
   Epimerase   80 ..ssedpadfieknlqgtlnlleaarkagvkrllflsSs 116 
                    + ++  + + + +  +lnl e  r+++++ ++ +sS 
  KIR65897.1 2928 slTLDQVDYALSAKVTAALNLHELTRDHDLDAFVLFSSM 2966
                  1134455666779************************93 PP

  == domain 3  score: 24.3 bits;  conditional E-value: 2.3e-08
                  EEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHHHHT-S....EEEE--S---H....HH CS
   Epimerase    2 lVtGatGfiGsalvkallekgye.vigldrlssasntarledl..........elveldltdrsalerlfkeeqpd....avihlAavggv....aa 79  
                  lVtG+tG +G+ +++ l+++g e ++ ++r+  + + a+ e +          ++  +d+ dr+al++l++e+ +d    av+h+A+v +     + 
  KIR65897.1 4384 LVTGGTGALGAEVARWLAARGAEhLLLVSRRGADAPGAA-ELVreltgagtrvTVAACDVADRAALAKLLAEVPADapltAVVHAAGVLDDgvldGL 4479
                  8********************886777777754444433.333589********************9999998776333369999995433011133 PP

                  HHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEE CS
   Epimerase   80 ssedpadfieknlqgtlnlleaarkagvkrllfls 114 
                  ++++ a +++  + g+l+l e    ++++ ++ +s
  KIR65897.1 4480 TADRIATVLRPKVLGALHLHELTVGRELRAFVLFS 4514
                  55666666677777777777777777776666666 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.1   1.7e-10   1.3e-07      51     115 ..     174     236 ..     170     249 .. 0.93
   2 !   28.1   0.2   1.5e-09   1.2e-06      67     116 ..    1791    1838 ..    1768    1849 .. 0.85
   3 !   26.8   0.2   3.9e-09   3.1e-06      62     116 ..    3357    3409 ..    3340    3421 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.7e-10
                 EHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEES CS
  Thiolase_N  51 GnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsm 115
                 G  l++++++ i+  +a  +g+  e pavtv+ +csS+l a++laaq ++ g+++ ++agGv  m
  KIR65897.1 174 GHLLTGNATSVISGRVAYTLGL--EGPAVTVDTACSSSLVAIHLAAQGLRNGDCELALAGGVTVM 236
                 67788899999999999****9..99***********************************9888 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 1.5e-09
                  HHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEEST CS
  Thiolase_N   67 alkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsms 116 
                  +   g+  + pavtv+ +csS+l a++laaq+++age+d ++agG+  m 
  KIR65897.1 1791 SYTFGL--HGPAVTVDTACSSSLVALHLAAQALQAGECDLALAGGATVMA 1838
                  555555..789**********************************98886 PP

  == domain 3  score: 26.8 bits;  conditional E-value: 3.9e-09
                  HHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEEST CS
  Thiolase_N   62 iarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsms 116 
                  ++  +a ++g+  e pav v+ +csS+l a++la+q+++ ge+d ++agGv  m 
  KIR65897.1 3357 VSGRVAYALGL--EGPAVSVDTACSSSLVALHLAVQALRRGECDLALAGGVTVMA 3409
                  66677888888..99************************************9886 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.3e-07   0.00018       1      83 [.    1282    1362 ..    1282    1366 .. 0.80
   2 !   23.7   0.1   3.5e-08   2.7e-05       1     120 [.    2834    2959 ..    2834    2973 .. 0.82
   3 !   18.9   0.0     1e-06   0.00081       1      77 [.    4384    4458 ..    4384    4470 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.3e-07
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH.T-SEEEE-- CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev.qpdevynLA 83  
                     L+TG++G  G ++a++Ll++g   +++  r    + g  e +++    + ++ ++++ +D+tD+++++ l+a     ++v++ A
     KIR65897.1 1282 LVTGGTGALGRHTARWLLANGAAEVVLASRRGPEAPGAAELIEE---LRGTGAVRVVACDVTDAAAVDALVAGLpALTAVVHTA 1362
                     9*******************998888777766655555554443...234679******************9876778888866 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 3.5e-08
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHH....HHT-SEEEE--S-..--H CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerlla....evqpdevynLAAq..shV 88  
                     L+TG++G  G ++a++L ++g    ++  r    +++ i++l+ +  + l  ++++  +D  D+++l  ++a    e+  ++v++ AA     V
     KIR65897.1 2834 LVTGGTGALGGHMARWLAANGASHLVLLSRRGR-QADGIAELEAEL-TGLGARVTVAACDAADRDALAAVIAdlpaEHPLTAVVHTAAVldDSV 2925
                     9********************999888877766.679999998654.67899*****************997222256889*******855456 PP

                     HHHT..TSHHHHHHHHTHHHHHHHHHHHHCT..T CS
  GDP_Man_Dehyd   89 dvsf..ekPeytaevnvlGtlrLLeairalglek 120 
                       s+  ++ +y + ++v+++l+L e+ r++ l+ 
     KIR65897.1 2926 ISSLtlDQVDYALSAKVTAALNLHELTRDHDLDA 2959
                     5554338999******************998863 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 1e-06
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-S CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpd 77  
                     L+TG++G  G+ +a++L ++g e   +v r  + + g  e +++     + +++++  +D+ D+++l +llaev  d
     KIR65897.1 4384 LVTGGTGALGAEVARWLAARGAEHLLLVSRRGADAPGAAELVRELT--GAGTRVTVAACDVADRAALAKLLAEVPAD 4458
                     9**************************9999988888877776554..4578********************99655 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   6.9e-05     0.054       1      86 [.    1281    1363 ..    1281    1409 .. 0.79
   2 !   20.2   0.0   3.4e-07   0.00027       2     128 ..    2834    2965 ..    2833    2969 .. 0.81
   3 !   17.1   0.0     3e-06    0.0023       2     127 ..    4384    4514 ..    4383    4517 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.9e-05
                       EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT...T-SEEEE--- CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel.kvdvvfhaAA 86  
                       vlvtG++G++G++  r +l++ +++++l +r   +    ++ + eel+ +     + +v +dv+d++ ++ ++  l    +v+h+A 
       KIR65897.1 1281 VLVTGGTGALGRHTARWLLANGAAEVVLASRRGPEAPGAAELI-EELRGTGA---VRVVACDVTDAAAVDALVAGLpALTAVVHTAG 1363
                       89*****************************999888776655.44554333...45679999999999999886525678888886 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 3.4e-07
                       EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT......T-SEEEE------ CS
  Polysacc_synt_2    2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekale....elkvdvvfhaAAlKh 89  
                       lvtG++G++G ++ r ++++ +++++ll+r   + + i++ le+el+   l +++++  +d +d++ l+ ++     e+   +v+h+AA+  
       KIR65897.1 2834 LVTGGTGALGGHMARWLAANGASHLVLLSRRGRQADGIAE-LEAELTG--LGARVTVAACDAADRDALAAVIAdlpaEHPLTAVVHTAAVLD 2922
                       8********************************9999987.4455655..566667899*********999972222567889******987 PP

                       HHHHHH....SHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE CS
  Polysacc_synt_2   90 VPlvee....npleaiktNvlgtenvieaaieagvkkvvliSt 128 
                         ++ +    ++  a++  v+++ n+ e + +++ +++vl S+
       KIR65897.1 2923 DSVISSltldQVDYALSAKVTAALNLHELTRDHDLDAFVLFSS 2965
                       6665551111444577899999999999999999999999985 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 3e-06
                       EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-S....EEEE------ CS
  Polysacc_synt_2    2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvd....vvfhaAAlKh 89  
                       lvtG++G++G e+ r ++++ +++++l++r        ++ + +el+   ++v+  +  +dv+d++ l+k+l e+  d    +v+haA +  
       KIR65897.1 4384 LVTGGTGALGAEVARWLAARGAEHLLLVSRRGADAPGAAELV-RELTGAGTRVT--VAACDVADRAALAKLLAEVPADapltAVVHAAGVLD 4472
                       8*****************************999888776655.45556556444..7799*********9999876552222799**98876 PP

                       HHHHH....HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEE CS
  Polysacc_synt_2   90 VPlve....enpleaiktNvlgtenvieaaieagvkkvvliS 127 
                         +++      ++ +++  vlg+ ++ e ++  + +++vl S
       KIR65897.1 4473 DGVLDgltaDRIATVLRPKVLGALHLHELTVGRELRAFVLFS 4514
                       555541111344455556777777777777777777777776 PP

>> Docking  Erythronolide synthase docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   9.3   7.9e-11   6.1e-08       2      26 .]       4      28 ..       3      28 .. 0.96

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 7.9e-11
     Docking  2 nEeKLRdYLKRvTaDLrqtRrRLrE 26
                ++eK ++YLKR+T++Lr+tRrRLrE
  KIR65897.1  4 EDEKYVEYLKRTTSELRRTRRRLRE 28
                59**********************9 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.4   4.5e-05     0.035       1      73 [.    1281    1360 ..    1281    1377 .. 0.80
   2 !    7.7   0.2    0.0029       2.3       2      63 ..    2834    2903 ..    2833    2914 .. 0.73
   3 !   13.2   0.5   6.3e-05     0.049       2      65 ..    4384    4455 ..    4383    4467 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.5e-05
                  EEESSTTSHHHHHHHHHHHHHT-E..EEEEES-S....-SHHHHHHHHSTTEEE.ES-TT-HHHHHHHHTT-SEEEE--- CS
        NmrA    1 IlviGaTGrqGksvvrallkaghk..vralvRdt....kselakslkeaGvelv.kgdlddkeslvealkgvdvvfsvtg 73  
                  +lv+G+TG++G++ +r ll++g    v a  R +      el+++l   G++ v + d+ d + +++++ g  +  +v+ 
  KIR65897.1 1281 VLVTGGTGALGRHTARWLLANGAAevVLASRRGPeapgAAELIEELRGTGAVRVvACDVTDAAAVDALVAGLPALTAVVH 1360
                  79******************877522555556669999999*********88666*************999776666655 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0029
                  EESSTTSHHHHHHHHHHHHHT-EEEEEES-S......-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHT CS
        NmrA    2 lviGaTGrqGksvvrallkaghkvralvRdt......kselakslkeaGvelv..kgdlddkeslvealk 63  
                  lv+G+TG++G++++r l+++g +  +l+           el ++l   G+ +   + d+ d++ l++++ 
  KIR65897.1 2834 LVTGGTGALGGHMARWLAANGASHLVLLSRRgrqadgIAELEAELTGLGARVTvaACDAADRDALAAVIA 2903
                  79*****************777666655333354444445555666677644324888999999988875 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 6.3e-05
                  EESSTTSHHHHHHHHHHHHHT-EEEEEES-S......-SHHHHHHHHST..TEEEES-TT-HHHHHHHHTT- CS
        NmrA    2 lviGaTGrqGksvvrallkaghkvralvRdt......kselakslkeaG..velvkgdlddkeslvealkgv 65  
                  lv+G+TG++G+ v+r l+++g +   lv           el+++l  aG  v++ + d+ d++ l+++l +v
  KIR65897.1 4384 LVTGGTGALGAEVARWLAARGAEHLLLVSRRgadapgAAELVRELTGAGtrVTVAACDVADRAALAKLLAEV 4455
                  79*****************9999999997777899999***********43444499***********9987 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.7e-06    0.0021       1     122 [.    1282    1416 ..    1282    1439 .. 0.69
   2 ?    2.5   0.0     0.078        60       1     118 [.    2834    2967 ..    2834    2987 .. 0.68
   3 ?    4.6   0.0     0.018        14       1      91 [.    4384    4487 ..    4384    4525 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.7e-06
   3Beta_HSD    1 vvtGgaGFlGralvkeLvrleelkevrvlD.....lrespelleelskvnvkkviegDvtdkdkleealeg...vdvvihlaslvd..vagkltede 87  
                  +vtGg+G lGr+  + L+  +   ev  +           el eel+ ++   v+ +Dvtd++ +++ + g     +v+h+a++vd  v   l  d+
  KIR65897.1 1282 LVTGGTGALGRHTARWLLANGA-AEVVLASrrgpeAPGAAELIEELRGTGAVRVVACDVTDAAAVDALVAGlpaLTAVVHTAGIVDdgVLDGLDVDR 1377
                  69*****************995.777666534444556678889999999999*********999998877222578*******9944333455554 PP

   3Beta_HSD   88 imkvnvkG....TrnvleacvkagvrvlvYtSs.aevvgp 122 
                  ++ v + G     r + +a    ++ ++v  Ss a+vvg 
  KIR65897.1 1378 MQAV-LAGkataARVLHDATAGRDLDAFVLFSSlAGVVGS 1416
                  4444.33312113445577778888888766662456665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.078
   3Beta_HSD    1 vvtGgaGFlGralvkeLvrleelkevrvlD.....lrespelleelskvnvkk.viegDvtdkdkleealegv......dvvihlaslvd..vagkl 83  
                  +vtGg+G lG ++ + L   +   ++  l       +   el  el+ ++ +  v  +D  d d l +++ +        +v+h+a++ d  v + l
  KIR65897.1 2834 LVTGGTGALGGHMARWLAANGA-SHLVLLSrrgrqADGIAELEAELTGLGARVtVAACDAADRDALAAVIADLpaehplTAVVHTAAVLDdsVISSL 2929
                  69***********999998886.444444423222333334444555555554599************99885323333789***999874455555 PP

   3Beta_HSD   84 tedeim...kvnvkGTrnvleacvkagvrvlvYtSsae 118 
                  t d+++   ++ v    n+ e  +++++ ++v  Ss+ 
  KIR65897.1 2930 TLDQVDyalSAKVTAALNLHELTRDHDLDAFVLFSSMA 2967
                  55554311167788888999999999999999888874 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.018
   3Beta_HSD    1 vvtGgaGFlGralvkeLvrlee....lkevrvlDlrespelleelskvnvkk.viegDvtdkdkleealegv......dvvihlaslvd..vagklt 84  
                  +vtGg+G lG+++ + L  ++     l   r +D     el  el+  +++  v  +Dv d + l + l +v       +v+h a++ d  v   lt
  KIR65897.1 4384 LVTGGTGALGAEVARWLAARGAehllLVSRRGADAPGAAELVRELTGAGTRVtVAACDVADRAALAKLLAEVpadaplTAVVHAAGVLDdgVLDGLT 4480
                  69***************99986332223347788888888877777777665599************999983322334577777776633333455 PP

   3Beta_HSD   85 edeimkv 91  
                   d+i +v
  KIR65897.1 4481 ADRIATV 4487
                  5655555 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00045      0.35     124     240 .]     657     767 ..     654     767 .. 0.81
   2 !    6.3   1.7    0.0089         7     106     236 ..    2250    2354 ..    2235    2358 .. 0.55
   3 !    7.5   1.5    0.0038         3     195     238 ..    3894    3937 ..    3817    3939 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00045
         SAT 124 kslseLvplaveavrvafrlGlevarvaarleegsssssesWslavtglseeelekalaefneekglppasrvyisavssss.vtisGpPstleallks 221
                 +s+ e+v++ v  v+ + + +++va++ + ++    + ++  +++ +++ e+++ + l+ + ++ gl+   rv i+av++++ v++sG  ++l+ + + 
  KIR65897.1 657 HSVGEIVAAHVAGVLSLEHACALVAARGRLMQ----ALPAGGGMLAVNAAESDVLASLDGLASRDGLS--DRVGIAAVNGPAsVVVSGAVDALDVVEQA 749
                 78999999999999999999999999999999....33344555555589****************55..*********9999*********9666555 PP

         SAT 222 skakkkkkksklpiyapyH 240
                  +    +++ +l ++ ++H
  KIR65897.1 750 WRGRGVRTR-RLAVSHAFH 767
                 555555554.788888777 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0089
         SAT  106 ylvGlCtGllaAaavacskslseLvplaveavrvafrlGlevarvaarleegsssssesWslavtglseeelekalaefneekglppasrvyisavs 202 
                   +vG+++G +aAa va + +l++  ++av a+r  +  G++                   +++v+ ++ +e+++++a+           rv  +av+
  KIR65897.1 2250 AVVGHSQGEIAAAYVAGALTLDD--AAAVVALRSRIIAGIAGDG---------------GMVSVA-TTADEATATIARWDG--------RVALAAVN 2320
                  57777777777777777777776..3444444433333333222...............133333.233333333333333........44455666 PP

         SAT  203 sss.vtisGpPstleallksskakkkkkksklpiy 236 
                  +++ v++sG   +l++l+++ +a +++ + ++p+ 
  KIR65897.1 2321 GPTsVVVSGDSAALDELVAHYEARETRVR-RVPVD 2354
                  65557777777777666666666666654.66665 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0038
         SAT  195 rvyisavssss.vtisGpPstleallksskakkkkkksklpiyap 238 
                   v ++av++++ v++sGpP+ +++l++ ++ +  + +  +p+  +
  KIR65897.1 3894 GVGVAAVNGPGtVVVSGPPQPVADLVQACQDEGIRAR-LIPVDYA 3937
                  567999**9999*****************99999877.6777655 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.5    0.0046       3.6       2      59 ..    1280    1362 ..    1279    1397 .. 0.88
   2 !    7.3   0.4    0.0029       2.2       3      61 ..    2833    2920 ..    2831    2956 .. 0.86
   3 !   10.6   0.3   0.00027      0.21       3      59 ..    4383    4468 ..    4381    4472 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0046
                     EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT........................T--TTSHHHHHHHHHHH--.SEEEE-- CS
  RmlD_sub_bind    2 kilvtGanGqlGseLakqlaeeglevlaltre........................eldltdaeavaellkeakp.dvvvnaA 59  
                     ++lvtG++G+lG++ a+ l ++g++ + l ++                        ++d+tda+av++l++      +vv++A
     KIR65897.1 1280 TVLVTGGTGALGRHTARWLLANGAAEVVLASRrgpeapgaaelieelrgtgavrvvACDVTDAAAVDALVAGLPAlTAVVHTA 1362
                     58***************99999887666644448************************************9865425899988 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0029
                     EEEESTTSHHHHHHHHHCTTTSEEEEEE.-TT........................T--TTSHHHHHHHH....HHH--SEEEE---- CS
  RmlD_sub_bind    3 ilvtGanGqlGseLakqlaeeglevlal.tre........................eldltdaeavaell....keakpdvvvnaAAy 61  
                      lvtG++G+lG ++a+ la++g++ l l +r+                        ++d +d++a+a+++    +e+   +vv++AA 
     KIR65897.1 2833 ALVTGGTGALGGHMARWLAANGASHLVLlSRRgrqadgiaeleaeltglgarvtvaACDAADRDALAAVIadlpAEHPLTAVVHTAAV 2920
                     69********************9988884555999*********************9**********99944333444559****996 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00027
                     EEEESTTSHHHHHHHHHCTTTSEEEEEE.-TT........................T--TTSHHHHHHHHHHH--S....EEEE-- CS
  RmlD_sub_bind    3 ilvtGanGqlGseLakqlaeeglevlal.tre........................eldltdaeavaellkeakpd....vvvnaA 59  
                      lvtG++G+lG e+a+ la++g+e l l +r+                        ++d++d++a+a+ll+e+  d    +vv+aA
     KIR65897.1 4383 TLVTGGTGALGAEVARWLAARGAEHLLLvSRRgadapgaaelvreltgagtrvtvaACDVADRAALAKLLAEVPADapltAVVHAA 4468
                     79********************99888835559999*****************99999*******999997766654444899988 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   5.9   1.6e-06    0.0013       1     123 [.    1285    1431 ..    1285    1454 .. 0.72
   2 !    9.1   1.5    0.0014       1.1       1      99 [.    2837    2966 ..    2837    2994 .. 0.62
   3 ?   -0.7   0.1       1.5   1.1e+03       6      34 ..    3445    3475 ..    3442    3524 .. 0.79
   4 ?   -0.9   1.2       1.6   1.3e+03       4     105 ..    3839    3943 ..    3837    3957 .. 0.65
   5 ?    5.8   3.5     0.014        11       1      62 [.    4387    4458 ..    4387    4543 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.6e-06
                      TTTSHHHHHHHHHHHHC-T-EEEEEETT.......HHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-S...EEEES---TCC........HH CS
  NAD_binding_10    1 GAtGkvGrllvkellargghevtalvRn.......peklaeleaeeglevvegdvtdvedlaealkgad...aVvsalggggk........de 75  
                      G+tG  Gr+ ++ lla+g  ev++  R+       +e ++el+ + +++vv  dvtd++++ + ++g     aVv ++g  ++        d 
      KIR65897.1 1285 GGTGALGRHTARWLLANGAAEVVLASRRgpeapgaAELIEELRGTGAVRVVACDVTDAAAVDALVAGLPaltAVVHTAGIVDDgvldgldvD- 1376
                      9*****************99*****99965554433444689999*********************98622266666655444555555441. PP

                      HH...........HHHHHHHHHHCT--EEEEEEET.TTTSGCGCHHHHHHHHCCHHHHHH CS
  NAD_binding_10   76 eg...........aknivdaakeagvkRfvlvsai.gvgdevpgefgewnkellkaylaa 123 
                                   a+ + da    +   fvl s++ gv     g+ g+ n+ + +ayl+a
      KIR65897.1 1377 -RmqavlagkataARVLHDATAGRDLDAFVLFSSLaGVV----GSAGQGNYAAANAYLDA 1431
                      .13456666666577778888899999999999851444....55566665555566554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0014
                      TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH...HHHCT.....TTCEEEE--TT-CCHHHHHHT......T-SEEEES---TCC...... CS
  NAD_binding_10    1 GAtGkvGrllvkellargghevtalvRnpekla...eleae.....eglevvegdvtdvedlaealk......gadaVvsalggggk...... 73  
                      G+tG  G + ++ l+a+g  ++++l R+  +++   eleae     ++++v   d+ d ++la++++         aVv +++  ++      
      KIR65897.1 2837 GGTGALGGHMARWLAANGASHLVLLSRRGRQADgiaELEAEltglgARVTVAACDAADRDALAAVIAdlpaehPLTAVVHTAAVLDDsvissl 2929
                      9*****************88999999997777533355532222236999****************944443322455555533222233333 PP

                      ...HHHH..........HHHHHHHHHHCT--EEEEEEET CS
  NAD_binding_10   74 ...deeg..........aknivdaakeagvkRfvlvsai 99  
                         +  +          a n+ +  + ++   fvl s++
      KIR65897.1 2930 tldQ--VdyalsakvtaALNLHELTRDHDLDAFVLFSSM 2966
                      2220..133333333335555555555555556666555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.5
                      HHHHHHHHHHHC-..T-EEEEEETTHHHCHH CS
  NAD_binding_10    6 vGrllvkellarg..ghevtalvRnpeklae 34  
                      vG llv++l +++  gh+v a+vR ++  ++
      KIR65897.1 3445 VGVLLVERLSDARrnGHRVLAVVRGSAVNQD 3475
                      89999****999899*********8765554 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.6
                      SHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEE.EES---TCC.....HHHHHHHHHHHHHHCT- CS
  NAD_binding_10    4 GkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaV.vsalggggk.....deegaknivdaakeagv 90  
                      G +G + v+ +l+ ++ + + ++ ++  la l+ + ++  v++   +++++++ l+    V v+a++g g+       + ++ +v+a++ +g+
      KIR65897.1 3839 GEIGAACVAGILSLDD-AAKTVALRSRALAVLRGTGAMASVDL---SADAVTARLAAFPGVgVAAVNGPGTvvvsgPPQPVADLVQACQDEGI 3927
                      7788888888888854.44444444445555765555555554...3667777777777774555566666555544444************9 PP

                      -.EEEEEEETTTTSGC CS
  NAD_binding_10   91 k.Rfvlvsaigvgdev 105 
                      + R++ v ++    +v
      KIR65897.1 3928 RaRLIPVDYASHSPSV 3943
                      5499999887766554 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.014
                      TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH.......HHH.CTTTCEEEE--TT-CCHHHHHHTT-..S CS
  NAD_binding_10    1 GAtGkvGrllvkellargghevtalvRnpekla.......ele.aeeglevvegdvtdvedlaealkga..d 62  
                      G+tG  G ++++ l+arg  ++ ++ R+ ++++       el  a  +++v   dv d ++la+ l+ +  d
      KIR65897.1 4387 GGTGALGAEVARWLAARGAEHLLLVSRRGADAPgaaelvrELTgAGTRVTVAACDVADRAALAKLLAEVpaD 4458
                      9****************9767888889977776555555566545589******************965223 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0062       4.8       1      50 [.    1283    1331 ..    1283    1344 .. 0.87
   2 !    7.8   0.1    0.0021       1.6       1      51 [.    2835    2884 ..    2835    2921 .. 0.82
   3 ?    0.6   0.1      0.32   2.5e+02       1      48 [.    4385    4431 ..    4385    4517 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0062
                     EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-H CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkel 50  
                     +TG+TG LG++  + LL + ++ +++l  R   ++ +++ l eel+ +++
     KIR65897.1 1283 VTGGTGALGRHTARWLLANGAA-EVVLASRRGPEAPGAAELIEELRGTGA 1331
                     7****************99986.9*9999999998888888888887765 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0021
                     EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HH CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelf 51  
                     +TG+TG LG ++ + L  + +  +++ll R  +++++ + le+el+  ++ 
     KIR65897.1 2835 VTGGTGALGGHMARWLAANGAS-HLVLLSRRGRQADGIAELEAELTGLGAR 2884
                     7**********98877777664.******************9999876654 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.32
                     EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekk 48  
                     +TG+TG LG+ + + L  + +e ++ l+ R   ++ +++ l +el+  
     KIR65897.1 4385 VTGGTGALGAEVARWLAARGAE-HLLLVSRRGADAPGAAELVRELTGA 4431
                     7*********988877777766.7777777777767777776777665 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2     0.021        16       3      31 ..     202     230 ..     200     238 .. 0.87
   2 ?   -2.3   0.9       5.3   4.2e+03      42      65 ..    1374    1396 ..    1343    1409 .. 0.72
   3 ?    9.8   0.7   0.00087      0.68       3      37 ..    1803    1837 ..    1801    1842 .. 0.89
   4 ?    7.3   0.1    0.0054       4.2       3      33 ..    3374    3404 ..    3372    3427 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.021
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEE CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLv 31 
                  + +aCs+ ++a+++A++ +++g ++ +L 
   KIR65897.1 202 VDTACSSSLVAIHLAAQGLRNGDCELALA 230
                  5689******************9998885 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.3
                   -TTTHHHHTTB-EEEEEEEEEEES CS
  ACP_syn_III   42 DwkdrstavlfGDGAgAvvlease 65  
                   D  dr++avl G + +A vl   +
   KIR65897.1 1374 DV-DRMQAVLAGKATAARVLHDAT 1396
                   22.7***************98863 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00087
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEG CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetl 37  
                   + +aCs+ ++al++A++++++g++  +L  ga ++
   KIR65897.1 1803 VDTACSSSLVALHLAAQALQAGECDLALAGGATVM 1837
                   5689********************99998888766 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0054
                   EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEE CS
  ACP_syn_III    3 lnaaCsgfvyalsvAdaliesgaakrvLvig 33  
                   + +aCs+ ++al++A ++++ g++  +L  g
   KIR65897.1 3374 VDTACSSSLVALHLAVQALRRGECDLALAGG 3404
                   578*******************999888655 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.2    0.0074       5.8       6      65 ..    1286    1348 ..    1281    1359 .. 0.79
   2 ?    5.3   0.2     0.038        29       6      60 ..    2838    2894 ..    2833    2927 .. 0.73
   3 ?    1.9   0.2      0.43   3.4e+02       6      48 ..    4388    4433 ..    4385    4458 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0074
                     TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCC..HHHHHHHHC....-EEECECHHHHHHH-SEE CS
  F420_oxidored    6 GaGnmgealasgllaagaqpheivvansrnpek..aeelaeelg....vkvtavdneeaaeeadvv 65  
                     G+G +g+  a+ lla+g  + e+v+a++r pe   a+el eel     v+v a d  +aa+  d +
     KIR65897.1 1286 GTGALGRHTARWLLANG--AAEVVLASRRGPEApgAAELIEELRgtgaVRVVACDVTDAAA-VDAL 1348
                     9****************..99***9*99999843356666666677778888878888876.5555 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.038
                     TTSHHHHHHHHHHHHTTS-GGCEEEEEE..SSCCCHHHHHHHHC...-EEECECHHHHHH CS
  F420_oxidored    6 GaGnmgealasgllaagaqpheivvans..rnpekaeelaeelg...vkvtavdneeaae 60  
                     G+G +g  +a+ l+a+g  ++++v+ ++  r+ + ++el++el    ++vt  ++ +aa+
     KIR65897.1 2838 GTGALGGHMARWLAANG--ASHLVLLSRrgRQADGIAELEAELTglgARVTV-AACDAAD 2894
                     9****************..555554433114566777777777677766666.7777776 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.43
                     TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCC..CHHHHHHHHC...- CS
  F420_oxidored    6 GaGnmgealasgllaagaqpheivvansrnpe..kaeelaeelg...v 48  
                     G+G +g+ +a+ l+a+g  +++++++++r  +   a+el +el     
     KIR65897.1 4388 GTGALGAEVARWLAARG--AEHLLLVSRRGADapGAAELVRELTgagT 4433
                     9****************..77777785665552234555555444432 PP

>> GBP_PSP  Paralytic/GBP/PSP peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2      0.12        93      15      20 ..     253     258 ..     244     259 .. 0.87
   2 ?    6.9   0.1    0.0061       4.8      15      21 ..    1854    1860 ..    1845    1861 .. 0.88
   3 ?    2.5   0.1      0.14   1.1e+02      15      20 ..    3425    3430 ..    3423    3431 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.12
                 TTS-EE CS
     GBP_PSP  15 aDGRCK 20 
                 aDGRCK
  KIR65897.1 253 ADGRCK 258
                 9****9 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0061
                  TTS-EEE CS
     GBP_PSP   15 aDGRCKP 21  
                  aDGRCKP
  KIR65897.1 1854 ADGRCKP 1860
                  9****** PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.14
                  TTS-EE CS
     GBP_PSP   15 aDGRCK 20  
                  aDGRCK
  KIR65897.1 3425 ADGRCK 3430
                  9****9 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2     0.011       8.3       2      90 ..    1281    1368 ..    1280    1373 .. 0.84
   2 ?    2.7   0.1       0.2   1.6e+02       4      76 ..    2835    2907 ..    2832    2926 .. 0.78
   3 ?   -0.7   0.1       2.4   1.8e+03       4      33 ..    4385    4413 ..    4383    4448 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.011
                      EEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTT CS
  Semialdhyde_dh    2 vaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapklaeag 90  
                      v + G+tG+ G+  +r L  +  +e+v ++ +   +    ae+ ++l+++  ++v ++d  + ++vd ++  lpa ++  +++ +++ g
      KIR65897.1 1281 VLVTGGTGALGRHTARWLLANGAAEVVLASRRGP-EAPGAAELIEELRGTGAVRVVACDVTDAAAVDALVAGLPALTAVVHTAGIVDDG 1368
                      7899****************99998887555444.66667777779****************************988887777777666 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.2
                      EETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCH CS
  Semialdhyde_dh    4 ivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpa 76  
                      + G+tG+ G  ++r L+ +    lv l+ + r+a    +  ++ +  g+ ++v ++d+++ +++  v+  lpa
      KIR65897.1 2835 VTGGTGALGGHMARWLAANGASHLVLLSRRGRQADGIAELEAELTGLGARVTVAACDAADRDALAAVIADLPA 2907
                      67****************9999999988888866555555555566677777777888888887777777776 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.4
                      EETTTSHHHHHHHHHHHCTSSEEEEEEEES CS
  Semialdhyde_dh    4 ivGatGyvGqellrlLeehpevelvvllss 33  
                      + G+tG+ G+e++r L+    +e + l+s+
      KIR65897.1 4385 VTGGTGALGAEVARWLAAR-GAEHLLLVSR 4413
                      679*************983.3444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 1.76u 0.32s 00:00:02.08 Elapsed: 00:00:00.54
# Mc/sec: 26742.79
//
Query:       KIR65898.1  [L=3646]
Description: polyketide synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.3e-176  584.4  15.9    1.2e-90  303.5   0.2    3.5  4  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
   2.4e-136  454.4   7.5    3.7e-79  266.5   0.3    2.5  2  Acyl_transf_1    Acyl transferase domain
     5e-114  378.4  19.3    6.9e-58  195.5   2.8    3.8  4  KR               KR domain
   2.8e-105  351.8   5.7    4.4e-52  177.2   0.3    2.7  2  PS-DH            Polyketide synthase dehydratase
    3.2e-88  291.7  13.7    2.3e-44  150.2   0.6    3.2  2  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    1.5e-32  112.4   0.0    1.4e-15   57.7   0.0    2.5  2  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    2.5e-27   95.0   0.0      1e-13   51.4   0.0    3.0  2  PP-binding       Phosphopantetheine attachment site
    2.2e-23   82.8   5.4    2.6e-12   46.6   0.1    3.9  4  adh_short        short chain dehydrogenase
    6.1e-13   48.1   6.2    1.5e-12   46.9   6.2    1.8  1  Docking          Erythronolide synthase docking
      3e-10   39.9   8.5    1.8e-05   24.2   0.2    3.2  3  Thiolase_N       Thiolase, N-terminal domain
    1.5e-07   30.9   0.0    0.00062   19.0   0.0    2.2  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
    6.3e-07   29.1   7.4    0.00078   19.0   0.3    2.8  3  Epimerase        NAD dependent epimerase/dehydratase family
    0.00018   21.0   0.0       0.51    9.7   0.0    2.2  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
     0.0041   16.3   2.2       0.96    8.6   0.2    2.4  2  NAD_binding_4    Male sterility protein
     0.0041   16.7   6.0       0.62    9.6   0.5    2.5  2  NmrA             NmrA-like family
  ------ inclusion threshold ------
       0.03   14.2   3.0        7.4    6.5   0.4    3.5  2  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
      0.079   12.7   6.6       0.72    9.5   1.2    3.5  2  SAT              Starter unit:ACP transacylase in aflatoxin b
       0.15   12.5   1.4        8.5    6.8   0.1    2.7  2  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
       0.15   11.1   3.6        4.2    6.4   0.5    2.6  2  RmlD_sub_bind    RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.1   1.3   7.8e-90   7.4e-87       2     253 .]      34     284 ..      33     284 .. 0.97
   2 ?   -3.0   0.5       4.6   4.3e+03     194     241 ..    1389    1440 ..    1388    1443 .. 0.78
   3 !  303.5   0.2   1.3e-93   1.2e-90       2     253 .]    1808    2058 ..    1807    2058 .. 0.98
   4 ?   -2.8   0.0       3.8   3.6e+03      96     122 ..    2414    2445 ..    2399    2474 .. 0.63

  Alignments for each domain:
  == domain 1  score: 291.1 bits;  conditional E-value: 7.8e-90
                    --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllle 94 
                    ep+aiv m++rfPg +  +e++w+++ +grd ++++padr wd   lyd + +  g+++t++ggf++  +dfdp ff isprea amdpqqr+lle
     KIR65898.1  34 EPIAIVSMSCRFPGDVRsPEDLWDVVASGRDVVGDFPADRgWDLGSLYDADGEQSGTSYTRQGGFVHdLADFDPGFFAISPREALAMDPQQRWLLE 129
                    89************9999****************************************************************************** PP

                    HHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt  95 aawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslr 190
                    ++we +e+ag++p++l+gsr+gvf+G++ +dy++  +   ++   +++  ++g+ + +v++grisy++gl+Gp+vt+dtACsSslva+h+a q+lr
     KIR65898.1 130 TSWEVFERAGIDPHSLRGSRTGVFAGSTGQDYGGVLMGA-AQ-GLEGHL-MTGN-AGSVVSGRISYTFGLEGPAVTIDTACSSSLVALHLAGQALR 221
                    ********************************8744444.34.388888.9***.***************************************** PP

                    TTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    ++e+ +a++ Gv++++tp a++ fs+++ l++dgrckaf+++adG+ ++EGvG+++L+rl+da
     KIR65898.1 222 QRECTLAVVAGVTAMCTPAAFVEFSRQRGLAADGRCKAFAAAADGTGWSEGVGVLLLERLSDA 284
                    *************************************************************98 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.6
                     -SEEEEEEEE---SHHHHHHHHHTT.BB-TT.SG.GGTTBTTB.-SB-BB-E CS
  ketoacyl-synt  194 advalaGGvellltpeavagfsaag.llspd.gr.ckafdpka.dGfvlGEG 241 
                     + +al+ +v+++  +  +++  aag  l++   + + + +p++ dG+vl  G
     KIR65898.1 1389 CAAALVAAVDTDEPQVVIRAGVAAGaRLTRVpAPaEPPAAPFDgDGTVLVTG 1440
                     789*****************99999778887633255566666899998655 PP

  == domain 3  score: 303.5 bits;  conditional E-value: 1.3e-93
                     --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHH CS
  ketoacyl-synt    2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrll 92  
                     ep aivGm++r+Pgg+  ++++w+l+ +g dai++lp+dr wd d ly p+++a g+ +++ ggfl  vd+fdp ffgisprea amdpqqrll
     KIR65898.1 1808 EPLAIVGMACRLPGGVWsPDDLWRLVADGVDAITDLPTDRgWDLDSLYSPDPDASGTFYARGGGFLRgVDRFDPGFFGISPREALAMDPQQRLL 1901
                     799*************99**************************************************************************** PP

                     HHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt   93 leaawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186 
                     le++we++e+ag++p++l+gs++gvf+G++ +dy+ l a++++    ++++  +g+ +++vi+gr++y++gl+Gp+v++dtACsSslva+h a 
     KIR65898.1 1902 LETTWETFESAGIDPATLRGSSTGVFVGTSGQDYGSLLAYSPEA--AEGYM-LTGM-TSSVISGRVAYTFGLEGPAVSLDTACSSSLVALHWAG 1991
                     **********************************9888887665..79999.9997.************************************* PP

                     HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  187 qslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253 
                     q+lr+ge+d+alaGGv ++ tp a++ fs+++ l++dgrck+f+++adG+ ++EGvG+++++rl+da
     KIR65898.1 1992 QALRAGECDLALAGGVMVMATPTAFVEFSRQRGLAADGRCKSFAASADGTGWSEGVGMLLVQRLSDA 2058
                     *****************************************************************98 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 3.8
                     HHHHHHHHTS-HHTCTTGG.....EEEEEEES CS
  ketoacyl-synt   96 awealedagltpeeldgsr.....vgvfiGvg 122 
                      +  +e+ag++p+++ g +     +++++G+ 
     KIR65898.1 2414 LAAVWEHAGVSPQAVVGHSqgeigAACVAGIL 2445
                     567899******99977774554444444433 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.7   1.9   4.8e-59   4.6e-56       3     317 ..     567     884 ..     566     886 .. 0.95
   2 !  266.5   0.3   3.9e-82   3.7e-79       1     316 [.    2342    2656 ..    2342    2659 .. 0.98

  Alignments for each domain:
  == domain 1  score: 190.7 bits;  conditional E-value: 4.8e-59
                    EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHH CS
  Acyl_transf_1   3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGE 94 
                    +fsGqG+Q aGMG+eL++  ++fa ++++   ++ +     + +vl + +      lld+++f+q +L+av++al+ l +s+Gv p+ v GHS+GE
     KIR65898.1 567 LFSGQGAQRAGMGRELYAAFPVFASALDEVCGHLDPLLPQPLREVLFAPEGsaeaALLDQTVFTQAGLFAVEVALFRLVESFGVVPDFVGGHSVGE 662
                    6**********************************************998888889**************************************** PP

                    HHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECCCE CS
  Acyl_transf_1  95 lAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalvenvnv 188
                    + aa+vag ls+++a   v+ r+rlm+ l   g+m+av+   ae+ e ++   dv  a++n+p +vv+sg  eal+e+ + ++ +gv+ ++ +v+ 
     KIR65898.1 663 ITAAHVAGVLSLADACQLVAARGRLMQALPAGGGMLAVNAaeAEVVESIAGRADVGIAAVNGPTSVVVSGAVEALDEVEQLWQGRGVRTRRLTVSH 758
                    ***************************************97666677888********************************************** PP

                    ECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCH.HHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCHHGG CS
  Acyl_transf_1 189 avhspqvdaiadalasaladiaprkpkvakisstsldesserel.saeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlksae 283
                    a+hsp ++++  + ++ la+++   p ++  s ++   +++  l  a+ywv+ +r++vr a+ ++++++ +  +f+ei p s+l+a   + l + +
     KIR65898.1 759 AFHSPLMEPMLAEFRAVLATLTFAAPVLPVVSNLTGALADADDLrTADYWVRHVREAVRYADGIAALRAAGAGTFLEIGPSSVLTALTAEILPD-A 853
                    ************************************999888773699********************************************95.5 PP

                    G-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT- CS
  Acyl_transf_1 284 dvksatlvGklkrdltdflvtflyllakahltgs 317
                    ++  a  +G  ++d  + ++++l++la++h+ g 
     KIR65898.1 854 EGVLAVAAG--RKDRPE-AEALLAALAELHVHGT 884
                    666677777..899999.9999999999999886 PP

  == domain 2  score: 266.5 bits;  conditional E-value: 3.9e-82
                     EEEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHH CS
  Acyl_transf_1    1 vfvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpeglldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGE 94  
                     vfvf+GqG+Q a M++ L    ++f a +a++ +a+++  +  +  vl+  +e+ l+++++vqp+L av iala++++ +Gv p avvGHS+GE
     KIR65898.1 2342 VFVFPGQGAQSARMAAGLVGRTPVFDARLAECQRALAPFLDVDLVSVLTGDDESWLERVEVVQPVLWAVGIALAAVWEHAGVSPQAVVGHSQGE 2435
                     8********************************************************************************************* PP

                     HHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECC CS
  Acyl_transf_1   95 lAaavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalvenv 186 
                     + aa vag ls+e+a++ v+lrsr  + l g g+ma+v l  +++ e+l  ++ v +a++n+p++vv+sg+++++++lv  +++eg++a+ + v
     KIR65898.1 2436 IGAACVAGILSLEDAAKTVALRSRALAVLRGTGAMASVDLsaDAVAERLPAFPGVGVAAVNGPGTVVVSGPPQPVADLVDACQAEGIRARLIPV 2529
                     ****************************************8778888888******************************************** PP

                     CEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCH CS
  Acyl_transf_1  187 nvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlk 280 
                     ++a+hsp v+++a+ l+++lad+ap++ +v   s+++ d  ++  + a+yw++nlr++v+f++av+ a++ ++ +fveispH++l++ +   l+
     KIR65898.1 2530 DYASHSPSVQDVAERLRADLADVAPQPGRVRLVSTLTGDWVDPASMTADYWYDNLRQTVQFDAAVRVAIAAGHSTFVEISPHPVLTMPVTAILD 2623
                     ********************************************************************************************** PP

                     HGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT CS
  Acyl_transf_1  281 saedvksatlvGklkrdltdflvtflyllakahltg 316 
                       + + +   +G+l+r+ +d   ++l++la+ah +g
     KIR65898.1 2624 --DAGVTGHTLGSLRRGDDD-PTRLLTNLATAHAIG 2656
                     ..678888899*********.************988 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.5   2.4   6.3e-60   5.9e-57       1     180 []    1434    1613 ..    1434    1613 .. 0.98
   2 ?   -3.7   0.0       9.9   9.4e+03      41      78 ..    2510    2548 ..    2496    2552 .. 0.75
   3 !  195.5   2.8   7.4e-61   6.9e-58       1     179 [.    3207    3385 ..    3207    3386 .. 0.98
   4 ?   -3.0   0.3       6.2   5.9e+03       7      29 ..    3389    3411 ..    3388    3414 .. 0.90

  Alignments for each domain:
  == domain 1  score: 192.5 bits;  conditional E-value: 6.3e-60
                  SEEEEETTTSHHHHHHHHHHHH.HHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR    1 gtylitGGlGgLGlelarwlae.kgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96  
                  gt+l+tG++G LG+ +ar+l+  +g rhlvl sR+++a +   +l ael++lga+v+++a+Dv+d+dav++ll++i a + p++ v+haAgv +d+ 
  KIR65898.1 1434 GTVLVTGATGTLGQLMARHLVTvHGVRHLVLASRRGRAAAGIPELCAELAELGATVTAAACDVADRDAVAELLAAIPAAH-PLTAVVHAAGVRDDGV 1529
                  89*******************7699***************************************************9665.**************** PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BTT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwae 180 
                  ++++t e+++ vl+pKv++aw+Lhel+++ +l+ fv +SS+a++ g +gq+nYaaaNaflD+la++rr++gl+a++++wglwa+
  KIR65898.1 1530 VSSLTPERMDGVLRPKVDAAWHLHELTAHLDLKAFVSYSSLAATAGGPGQGNYAAANAFLDGLAQHRRARGLAALTLAWGLWAD 1613
                  **********************************************************************************86 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 9.9
                  HHHHHHHHHHTT-EEEE----TT-HH.HHHHHHHHHHHH CS
          KR   41 skaliaelealgaevevvaaDvsdkd.avealleeikae 78  
                   ++l+++++a g++ +++++D ++++ +v+ + e+++a+
  KIR65898.1 2510 VADLVDACQAEGIRARLIPVDYASHSpSVQDVAERLRAD 2548
                  4569999**************776542677777777665 PP

  == domain 3  score: 195.5 bits;  conditional E-value: 7.4e-61
                  SEEEEETTTSHHHHHHHHHHHH.HHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR    1 gtylitGGlGgLGlelarwlae.kgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96  
                  gt+litGG+G LG+ lar+la  +g rhl+l +R++aa +   +l+ael++ g++v+v+a+D +d+da++all+ + a + p++ v+haAgvl+d+ 
  KIR65898.1 3207 GTVLITGGTGVLGRILARHLATtHGVRHLLLAGRRGAAADGIGDLVAELAEAGTRVTVAACDAADPDALAALLAGVPAAH-PLTAVVHAAGVLDDGV 3302
                  89*******************6489***********99999***********************************9665.**************** PP

                  TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  le++t e++++v  pK+++aw+Lh+l++  +l  fvlfSS+a++lgsagqanYaaaNaflDala++rr++glp++s++wglw+
  KIR65898.1 3303 LESLTPERVDAVAVPKIDAAWHLHRLTAGLDLAAFVLFSSAAATLGSAGQANYAAANAFLDALAAHRRARGLPGISLAWGLWE 3385
                  **********************************************************************************8 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 6.2
                  TTTSHHHHHHHHHHHHHHS-EEE CS
          KR    7 GGlGgLGlelarwlaekgarhlv 29  
                  G +G+LG + +r +ae+ga+ l+
  KIR65898.1 3389 GMTGHLGDADVRRIAEQGAAGLA 3411
                  789***************98775 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.2   0.3   4.6e-55   4.4e-52       1     296 [.     934    1224 ..     934    1226 .. 0.89
   2 !  176.3   0.9   8.4e-55   7.9e-52       1     294 [.    2705    2990 ..    2705    2994 .. 0.87

  Alignments for each domain:
  == domain 1  score: 177.2 bits;  conditional E-value: 4.6e-55
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hpllG+ v  a ++  +f  rl  + +pw+ DH+v+++v+lPg+g++e+al+A++++  ++    +r+++++++l+lpe+++v++ql + p++d   
  KIR65898.1  934 HPLLGAAVGVAHAEGFLFTGRLARRTHPWISDHVVFDTVLLPGTGFVELALQAGAHVGADH----VRELTLEAPLILPETGGVDIQLWIGPADDTGC 1026
                  9*********************************************************777....***************************55554 PP

                  .....EEEEEEE-SS-TT...EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE-- CS
       PS-DH   98 .rawvefeifSregggee..wtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealaelrl 191 
                   + ++   + S+ ++g+e  wt++a+G ++ +++a+a +  +++l  ++++p+ +++v+ +++Y  laa+g++yGpsF +lr++wr+ ++ +ael+l
  KIR65898.1 1027 rSVSLHSAVDSEPAEGGErgWTRNASGVLAGGPAAPAGPPGWSDL--TAWPPPGATEVPTDDLYLNLAAQGYDYGPSFIALRNAWRRGDDLFAELAL 1121
                  666666666666666666**************9999999999999..888888899***************************************** PP

                  -GGGSSTTTT-SB-HHHHHHHHHHG..GG.....----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEE CS
       PS-DH  192 peelaggesayvlhPallDaalQllaaal.....saeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaei 283 
                  pe+ a++++ y lhPallDaal++l+++      s ++   + ++lP++++ ++++    a  + + +++r++ +g  + +++l l d dG +++++
  KIR65898.1 1122 PETPAAEAGGYGLHPALLDAALHTLGLTTpagepSGADVPPGYGRLPFSWNDVALHA---A--GAAAARVRVSHTG--TDSVSLLLADVDGAPIISV 1211
                  ********9**************9888888888866677888899999999999995...2..3345555554444..457899999********** PP

                  ESEEEEE--XXXX CS
       PS-DH  284 eglrlrrvereal 296 
                    l lr+v++++l
  KIR65898.1 1212 GSLVLRPVSADQL 1224
                  *********9876 PP

  == domain 2  score: 176.3 bits;  conditional E-value: 8.4e-55
                  BTTB.-EE--.-SS-EEEEEEE-S-SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E CS
       PS-DH    1 hpllGsrvrsasdkevvfrnrlrlaelpwLrDHrvdgkvvlPgagylemaleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgad 97  
                  hpll + ++ ++++++vf  rl+++ +pwL +Hrv ++++lPg++++e+a  A++q+     + ++ ++++l++lvlp  ++++vql++ +++d+  
  KIR65898.1 2705 HPLLSATLTFPDSERMVFTGRLSVRTHPWLGEHRVMDNILLPGTAFVELATYAGEQAG----CPRVDELTLLAPLVLPALGSLQVQLTVAERDDDGR 2797
                  9********************************************************9....99************************999965554 PP

                  ....EEEEEEE-SS-TT.........EEEEEEEEEE-------B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEE CS
       PS-DH   98 rawvefeifSregggee........wtehatGtvrlaegaaaaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgeal 186 
                   +  +++++Sr   ++         wt hatG ++ a++++ +a dl  +     +p+ +++v+ ++fY  ++a+ + yGp+F+glra+w++ +e++
  KIR65898.1 2798 -R--AVQLHSRPYRDGSdeiladvaWTCHATGLLAPAPADP-PAFDLGVW-----PPPGATPVENDDFYSGIEATVFGYGPAFRGLRAAWTRGDEVF 2885
                  .4..7777776544444459***************887777.56666666.....55555569999******9999********************* PP

                  EEE---GGGSSTTTT-SB-HHHHHHHHHHG..GG....----------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BE CS
       PS-DH  187 aelrlpeelaggesayvlhPallDaalQllaaal....saeaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrv 279 
                  ae++lp++++++++++ +hPallD alQ++++        +  +a+ ++lP+a+  +++     a+   l+v++  ++    ++ +  ++ d++G +
  KIR65898.1 2886 AEVELPADHHAEAGRFGVHPALLDGALQAMSIGGflgrMGDGGDATVPRLPFAWTGVSLLA---AGATALRVRVSAAG----EVGVAFQVADATGAP 2975
                  ****************************7655446999667899****************6...44445555555543....678999********* PP

                  EEEEESEEEEE--XX CS
       PS-DH  280 vaeieglrlrrvere 294 
                  v++ e l +rrv+ +
  KIR65898.1 2976 VLHAESLIMRRVSGD 2990
                  ************976 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.4   1.8   4.4e-47   4.2e-44       1     117 [.     292     409 ..     292     410 .. 0.98
   2 !  150.2   0.6   2.5e-47   2.3e-44       1     117 [.    2066    2183 ..    2066    2184 .. 0.99

  Alignments for each domain:
  == domain 1  score: 149.4 bits;  conditional E-value: 4.4e-47
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-GGG CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHleaA 93 
                      +av++gsavn+dga+n+l apng +q+r+i++ala+ag+++  vd+veahgtgt+lgDpiE++al +++g+++   +pl +gS+KsniGH++aA
       KIR65898.1 292 LAVVRGSAVNQDGASNGLSAPNGPSQQRVIQQALANAGLAAGGVDVVEAHGTGTRLGDPIEAQALLATYGQDRGdAAPLLLGSIKSNIGHAQAA 385
                      69*********************************************************************999999***************** PP

                      HHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  94 aGvaelikvvlalkhgvipptlnl 117
                      aGva++ik+vla++hgv+pptl++
       KIR65898.1 386 AGVAGVIKMVLAMQHGVVPPTLHV 409
                      ***********************8 PP

  == domain 2  score: 150.2 bits;  conditional E-value: 2.5e-47
                       SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C    1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHle 91  
                       +av++g+a+nsdga+n+ltapng +q+r+i++ala+a+++ +dvd+veahgtgt+lgDpiE++al +++g+++  ++pl +gS+KsniGH++
       KIR65898.1 2066 LAVVRGTAINSDGASNGLTAPNGPSQQRVIRQALANARLSTSDVDVVEAHGTGTTLGDPIEAQALLATYGRDRPgDRPLLLGSIKSNIGHAQ 2157
                       69**********************************************************************99*9**************** PP

                       GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   92 aAaGvaelikvvlalkhgvipptlnl 117 
                       aAaGva++ikvv+a++hgv+p++l++
       KIR65898.1 2158 AAAGVAGVIKVVQAMRHGVVPASLHV 2183
                       *************************8 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   1.5e-18   1.4e-15       1     110 [.     412     529 ..     412     530 .. 0.90
   2 !   52.3   0.0   7.3e-17   6.9e-14       1     111 [.    2186    2305 ..    2186    2306 .. 0.91

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 1.5e-18
  KAsynt_C_assoc   1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk...eeslprLlvlsgrteeaveallekleehllda 88 
                     P p+++ ++ g +++vte+t+wp  +     +v+sfG++G+n+Hvi+++++++++++++     ++    +v+s+r+++a+ a++ + +++l+ +
      KIR65898.1 412 PTPQVD-WDAGAVELVTEATEWPSVArprrSAVSSFGVSGTNAHVIVEQAPTAEPAPADAappADRPVVPVVVSARDAAALAAQAGRWADRLDAD 505
                     99****.****************9999999*********************888888777664444555699*********************** PP

  KAsynt_C_assoc  89 ellsllneilseeisr..lpyRGy 110
                     ++l+ l+ ++s+  +r  l++R+ 
      KIR65898.1 506 ADLRPLDVAFSSVATRstLDHRAV 529
                     ********9988777767999975 PP

  == domain 2  score: 52.3 bits;  conditional E-value: 7.3e-17
  KAsynt_C_assoc    1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk....eeslprLlvlsgrteeaveallekleehl 85  
                      P+p+i+ ++ g + +vte+ pwp       ++v+sfG++G+n+Hvi+++ +++ ++  +      +   +++++s+r+++a+  ++e+l+++ 
      KIR65898.1 2186 PSPHID-WSAGAVDLVTEARPWPAVDrprrAAVSSFGISGTNAHVIVEQGDEPVAPAVTGvpglLAADVTVWPVSARSKAALAGQAERLAAYV 2277
                      99****.***************99888999*********************98888887788888999************************* PP

  KAsynt_C_assoc   86 ldaellsllneilseeisr..lpyRGya 111 
                      +++  l+ ++   s +++r  ++ R+ +
      KIR65898.1 2278 REHGVLDTAAVGWSLATTRstFDQRAAV 2305
                      *****99999988888877667777766 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   1.1e-16     1e-13       3      67 .]    1719    1784 ..    1717    1784 .. 0.92
   2 !   40.4   0.0   2.9e-13   2.7e-10       2      67 .]    3495    3561 ..    3494    3561 .. 0.91

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 1.1e-16
  PP-binding    3 lrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +r  +a vlg  ++ +i+p   ++++G+DSl+ave+ ++l+ +fg ++p + +f++pt+a+laa+l
  KIR65898.1 1719 VRGQAAAVLGYpDPAAIEPRRAFSEFGFDSLTAVEMRNRLNNAFGMRLPATLVFDYPTPADLAAHL 1784
                  6778899****555559***********************************************97 PP

  == domain 2  score: 40.4 bits;  conditional E-value: 2.9e-13
  PP-binding    2 klrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   +r+ +a vlg  +++++dp   + dlG+DSl+av+l ++l++  g+++p + +f++pt+a+la++l
  KIR65898.1 3495 VVRANIAAVLGHaSADAVDPGRLFTDLGFDSLTAVDLRNRLNALSGLRLPATLVFDYPTPAALAERL 3561
                  68999******85666688888899***************************************975 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.1   2.7e-15   2.6e-12       2     162 ..    1435    1595 ..    1434    1600 .. 0.87
   2 ?   -2.3   0.0       2.8   2.6e+03     152     172 ..    2262    2282 ..    2253    2327 .. 0.61
   3 ?   -0.6   0.0      0.83   7.9e+02      24      76 ..    2497    2550 ..    2492    2553 .. 0.83
   4 !   35.4   0.5   7.5e-12   7.1e-09       2     161 ..    3208    3367 ..    3207    3373 .. 0.88

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 2.7e-15
                  EEEEESTTSHHHHHHHHHHHH.TT-EEEEEESCHHHHH....HHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    2 vvlvtGassGIGraiakelak.eGakvvvvdrseekle....evakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                  +vlvtGa++ +G+ +a++l++  G++++v++++  +++    e+++el e+ga+++a+++Dv+dr++v +l++++ +   +l ++v+ AG+  +g +
  KIR65898.1 1435 TVLVTGATGTLGQLMARHLVTvHGVRHLVLASRRGRAAagipELCAELAELGATVTAAACDVADRDAVAELLAAIPA-AHPLTAVVHAAGVRDDGVV 1530
                  79*****************98579999997666665551222566666767**********************9955.679**************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrs 162 
                  s+l+ e+++ v+   + ++ +l ++ +   +     + v  sS a+  + +g+  Y+A+ a+++gl++ 
  KIR65898.1 1531 SSLTPERMDGVLRPKVDAAWHLHELTAHL-D---LKAFVSYSSLAATAGGPGQGNYAAANAFLDGLAQH 1595
                  *******************9998886666.4...3368***************************9875 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.8
                  HHHHHHHHHHHHHHHHGGGTE CS
   adh_short  152 sKaavagltrslakelaptgi 172 
                  sKaa+ag ++ la  ++++g+
  KIR65898.1 2262 SKAALAGQAERLAAYVREHGV 2282
                  666666666666666666665 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.83
                  T-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTT.SHHHHHHHHHHHHHHHS CS
   adh_short   24 GakvvvvdrseekleevakelkeegakalaiqvDvt.dreevealvekavkklg 76  
                  G  +vvv+  +++++ +++ +++eg +a  i+vD + ++ +v+++ e+ +++l 
  KIR65898.1 2497 GPGTVVVSGPPQPVADLVDACQAEGIRARLIPVDYAsHSPSVQDVAERLRADLA 2550
                  55667888889999*********************9667789999988887765 PP

  == domain 4  score: 35.4 bits;  conditional E-value: 7.5e-12
                  EEEEESTTSHHHHHHHHHHHH.TT-EEEE.EESCHHHHH...HHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    2 vvlvtGassGIGraiakelak.eGakvvv.vdrseekle...evakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                  +vl+tG+++ +Gr +a++la+  G+++++ ++r+ +++     +++el e+g++++++++D +d +++ al++ + +   +l ++v+ AG+  +g  
  KIR65898.1 3208 TVLITGGTGVLGRILARHLATtHGVRHLLlAGRRGAAADgigDLVAELAEAGTRVTVAACDAADPDALAALLAGVPA-AHPLTAVVHAAGVLDDGVL 3303
                  69*****************96379999995666655543222678999999************************65.579**************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltr 161 
                  ++l+ e++++v    + ++ +l r+ +        ++ v  sS a+  ++ag+a Y+A+ a++++l+ 
  KIR65898.1 3304 ESLTPERVDAVAVPKIDAAWHLHRLTAGL----DLAAFVLFSSAAATLGSAGQANYAAANAFLDALAA 3367
                  **********************9998887....67999*********************999998875 PP

>> Docking  Erythronolide synthase docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   6.2   1.6e-15   1.5e-12       1      26 []       2      27 ..       2      27 .. 0.98

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.6e-15
     Docking  1 anEeKLRdYLKRvTaDLrqtRrRLrE 26
                a+E KL+dYLKRvTaDL+q+R+RLrE
  KIR65898.1  2 ADEAKLLDYLKRVTADLHQVRQRLRE 27
                89***********************9 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.3   4.6e-07   0.00044      52     117 ..     175     238 ..     172     256 .. 0.88
   2 !   24.2   0.2   1.9e-08   1.8e-05      51     117 ..    1948    2012 ..    1944    2034 .. 0.88
   3 ?   -3.0   0.3       4.1   3.8e+03      81     121 ..    2436    2476 ..    2430    2483 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4.6e-07
                 HSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N  52 nvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117
                   +++++g+ ++  ++   g+  e pavt++ +csS+l a++la q+++  e+  +v+ Gv  m +
  KIR65898.1 175 HLMTGNAGSVVSGRISYTFGL--EGPAVTIDTACSSSLVALHLAGQALRQRECTLAVVAGVTAMCT 238
                 566777888888888888888..89************************************99975 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 1.9e-08
                  EHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N   51 GnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117 
                  G +l+++  + i+  +a   g+  e pav ++ +csS+l a++ a q+++age+d ++agGv  m +
  KIR65898.1 1948 GYMLTGMTSSVISGRVAYTFGL--EGPAVSLDTACSSSLVALHWAGQALRAGECDLALAGGVMVMAT 2012
                  7788888888899999999999..99************************************98876 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.1
                  EEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS-EE CS
  Thiolase_N   81 vnkvcsSglkavalaaqsiaageadvvvagGvEsmsnapta 121 
                  +  +c  g+ ++ +aa+ +a  +   +v+ G+  m  ++ +
  KIR65898.1 2436 IGAACVAGILSLEDAAKTVALRSRALAVLRGTGAMASVDLS 2476
                  6789****************************999988765 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   6.6e-07   0.00062       1      88 [.    1436    1525 ..    1436    1572 .. 0.79
   2 !    9.7   0.0   0.00046      0.43       1      86 [.    3209    3296 ..    3209    3341 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6.6e-07
                       EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT......T-SEEEE---- CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekalee....lkvdvvfhaAAl 87  
                       vlvtGa+G++G+ + r++++   +++++l +r   +   i + + +el++  l +++++  +dv+d++ ++++l +    +   +v+haA +
       KIR65898.1 1436 VLVTGATGTLGQLMARHLVTVhGVRHLVLASRRGRAAAGIPELC-AELAE--LGATVTAAACDVADRDAVAELLAAipaaHPLTAVVHAAGV 1524
                       89***************999879*****************9976.45544..67788899********999988642222677899***987 PP

                       - CS
  Polysacc_synt_2   88 K 88  
                       +
       KIR65898.1 1525 R 1525
                       6 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00046
                       EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT......T-SEEEE--- CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekale....elkvdvvfhaAA 86  
                       vl+tG++G +G+ l r+++++  +++++l  r   + + i + + +el++  ++v+  +  +d +d + l+ +l     ++   +v+haA 
       KIR65898.1 3209 VLITGGTGVLGRILARHLATThGVRHLLLAGRRGAAADGIGDLV-AELAEAGTRVT--VAACDAADPDALAALLAgvpaAHPLTAVVHAAG 3296
                       89****************998799************99999876.55666566444..778999999999888752222566778889886 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.5   3.3e+03      22      73 ..    1360    1410 ..    1353    1417 .. 0.79
   2 !   19.0   0.3   8.3e-07   0.00078       1     115 [.    1436    1569 ..    1436    1586 .. 0.71
   3 !   13.5   0.5   3.8e-05     0.036       1      74 [.    3209    3297 ..    3209    3344 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.5
                  TSEEEEEES-STTTTCHHCHHCEEEE--TT-HH....HHHHHHHHHT-SEEEE--S CS
   Epimerase   22 gyevigldrlssasntarledlelveldltdrs....alerlfkeeqpdavihlAa 73  
                  g  vigl r  +++n       ++  +d+ d++    al +++++ +p++vi ++ 
  KIR65898.1 1360 GAAVIGLVRSAQSENPD-----RFLLVDVDDPAgcaaALVAAVDTDEPQVVIRAGV 1410
                  56789999996666655.....7999999999988889999999999999999854 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 8.3e-07
                  EEEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC...............EEEE--TT-HHHHHHHHH....HHT-SEEEE--S.--- CS
   Epimerase    1 ilVtGatGfiGsalvkallekg.yevigldrlssasntarledl...............elveldltdrsalerlfk....eeqpdavihlAa.vgg 76  
                  +lVtGatG +G+ ++++l + + ++ ++l+++     ++r +                 +   +d+ dr+a+++l++     +  +av+h+A+   +
  KIR65898.1 1436 VLVTGATGTLGQLMARHLVTVHgVRHLVLASR-----RGRAAAGipelcaelaelgatvTAAACDVADRDAVAELLAaipaAHPLTAVVHAAGvRDD 1527
                  79****************97443553333333.....333333344448999******************9998876222156889*******6555 PP

                  HHHHHHSHHH...HHHHHTHHHHHHHHHHHHHTCTEEEEEEE CS
   Epimerase   77 vaassedpad...fieknlqgtlnlleaarkagvkrllflsS 115 
                    +ss +p++   +++  +  +++l e     ++k ++  sS
  KIR65898.1 1528 GVVSSLTPERmdgVLRPKVDAAWHLHELTAHLDLKAFVSYSS 1569
                  555665555422267888888888888888888888888888 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 3.8e-05
                  EEEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTTTCHHCHHC...........EEEE--TT-HHHHHHHHH....HHT-SEEEE--S- CS
   Epimerase    1 ilVtGatGfiGsalvkallekg.ye.vigldrlssasntarledl...........elveldltdrsalerlfk....eeqpdavihlAav 74  
                  +l+tG+tG +G+ l+++l++ + ++ ++   r+  + +   + dl           ++  +d  d++al++l++     +  +av+h+A+v
  KIR65898.1 3209 VLITGGTGVLGRILARHLATTHgVRhLLLAGRR--GAAADGIGDLvaelaeagtrvTVAACDAADPDALAALLAgvpaAHPLTAVVHAAGV 3297
                  79****************987655534444444..33333333336889******************888877622215678999999984 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00079      0.74       1      74 [.    1437    1509 ..    1437    1525 .. 0.80
   2 !    9.7   0.0   0.00054      0.51       1      74 [.    3210    3282 ..    3210    3297 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00079
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev 74  
                     L+TG +G  G+ +a++L++ +   h +       +++ i +l  +  +el  +++   +D+ D++++ +lla +
     KIR65898.1 1437 LVTGATGTLGQLMARHLVTVHGVRHLVLASRRGRAAAGIPELCAE-LAELGATVTAAACDVADRDAVAELLAAI 1509
                     9*****************986666666665556667778888765.468899******************9876 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00054
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev 74  
                     LiTG++G  G  la++L + +   h +       +++ i  l  +  +e+ +++++  +D  D ++l  lla v
     KIR65898.1 3210 LITGGTGVLGRILARHLATTHGVRHLLLAGRRGAAADGIGDLVAEL-AEAGTRVTVAACDAADPDALAALLAGV 3282
                     9******************988888888888888999999998755.57789****************999865 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.2    0.0029       2.7       1      38 [.    1438    1475 ..    1438    1502 .. 0.81
   2 !    8.6   0.2     0.001      0.96       1      39 [.    3211    3249 ..    3211    3297 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0029
                     EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHHHHH CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaksgesae 38  
                     +TGaTG LG+ + + L++ +  v +++l  R  + +++ 
     KIR65898.1 1438 VTGATGTLGQLMARHLVTVHG-VrHLVLASRRGRAAAGI 1475
                     7******************97.65888888877766655 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.001
                     EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHHHHHH CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaksgesaee 39  
                     +TG+TG LG++L + L +t+  v ++ l  R    +++  
     KIR65898.1 3211 ITGGTGVLGRILARHLATTHG-VrHLLLAGRRGAAADGIG 3249
                     8***************99997.657777767666655555 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.6   0.00084      0.79       1      63 [.    1436    1507 ..    1436    1525 .. 0.79
   2 !    9.6   0.5   0.00065      0.62       1      70 [.    3209    3287 ..    3209    3301 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00084
                  EEESSTTSHHHHHHHHHHHH...HT-EEEEEES-S....-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHT CS
        NmrA    1 IlviGaTGrqGksvvrallk...aghkvralvRdt....kselakslkeaGvelv..kgdlddkeslvealk 63  
                  +lv+GaTG +G+ ++r+l+    + h v a  R        el ++l+e G+++   + d+ d++ ++e+l 
  KIR65898.1 1436 VLVTGATGTLGQLMARHLVTvhgVRHLVLASRRGRaaagIPELCAELAELGATVTaaACDVADRDAVAELLA 1507
                  79****************995444455555555558888789999*******99855668889999988876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00065
                  EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S........-SHHHHHHHHST..TEEEES-TT-HHHHHHHHTT-SEEEE CS
        NmrA    1 IlviGaTGrqGksvvrallkaghkvralvRdt........kselakslkeaG..velvkgdlddkeslvealkgvdvvfs 70  
                  +l++G+TG +G+ ++r+l+   h vr l+            ++l+++l+eaG  v++ + d+ d + l+++l gv ++  
  KIR65898.1 3209 VLITGGTGVLGRILARHLAT-THGVRHLLLAGrrgaaadgIGDLVAELAEAGtrVTVAACDAADPDALAALLAGVPAAHP 3287
                  79**************9887.455555554334456998899**********43344499**************987765 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.4    0.0079       7.4       3      37 ..     202     236 ..     200     260 .. 0.88
   2 ?    6.0   0.1     0.011        11       4      31 ..    1977    2004 ..    1974    2026 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0079
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEG CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetl 37 
                  + +aCs+ ++al++A +++++ ++  ++v g  ++
   KIR65898.1 202 IDTACSSSLVALHLAGQALRQRECTLAVVAGVTAM 236
                  678*******************9999999987765 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.011
                   E-GGGHHHHHHHHHHHHHHTTS-SEEEE CS
  ACP_syn_III    4 naaCsgfvyalsvAdaliesgaakrvLv 31  
                    +aCs+ ++al+ A +++++g++  +L 
   KIR65898.1 1977 DTACSSSLVALHWAGQALRAGECDLALA 2004
                   689******************9988885 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.21     2e+02     193     240 .]     714     761 ..     699     761 .. 0.76
   2 ?    9.5   1.2   0.00076      0.72     190     239 ..    2484    2533 ..    2416    2534 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.21
         SAT 193 asrvyisavssss.vtisGpPstleallksskakkkkkksklpiyapyH 240
                  + v i+av++++ v++sG  ++l+++ +  +    +++ +l ++ ++H
  KIR65898.1 714 RADVGIAAVNGPTsVVVSGAVEALDEVEQLWQGRGVRTR-RLTVSHAFH 761
                 46788*****9998**********877666666666665.777777777 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00076
         SAT  190 lppasrvyisavssss.vtisGpPstleallksskakkkkkksklpiyapy 239 
                  lp+   v ++av++++ v++sGpP+ +++l++ ++a+  + +  +p+  + 
  KIR65898.1 2484 LPAFPGVGVAAVNGPGtVVVSGPPQPVADLVDACQAEGIRAR-LIPVDYAS 2533
                  556677889****9999*******************999987.68876655 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1     0.009       8.5       2      76 ..    1436    1511 ..    1435    1546 .. 0.76
   2 ?    4.0   0.2     0.071        67       2      71 ..    3209    3279 ..    3208    3297 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.009
                      EEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEE.GGGGGCTT-SEEEE-SCH CS
  Semialdhyde_dh    2 vaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkved.vdeeelkevdivflalpa 76  
                      v + GatG  Gq ++r L +   v  +vl+s++  a   + e++ +l+e    +  + +d ++ ++v  ++ a pa
      KIR65898.1 1436 VLVTGATGTLGQLMARHLVTVHGVRHLVLASRRGRAAAGIPELCAELAELGATVTAAaCDVADRDAVAELLAAIPA 1511
                      7899****************99999999999998899999999885554443333333666666666666666654 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.071
                      EEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSG.GGTTTECEBEEEGGGGGCTT-SEEE CS
  Semialdhyde_dh    2 vaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavk.aleegkdlkvedvdeeelkevdivf 71  
                      v i G+tG  G+ l+r L++   v  + l++++  a   + ++v    e g+ ++v ++d+++ +++  ++
      KIR65898.1 3209 VLITGGTGVLGRILARHLATTHGVRHLLLAGRRGAAADGIGDLVAeLAEAGTRVTVAACDAADPDALAALL 3279
                      8899****************999999999999998888888887744445556666666666665555555 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.5    0.0044       4.2       2      60 ..    1435    1523 ..    1434    1530 .. 0.81
   2 ?    4.7   0.1     0.015        14       2      59 ..    3208    3295 ..    3207    3319 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0044
                     EEEEESTTSHHHHHHHHHCTT.TSEEEEEE-TT.........................T--TTSHHHHHHHHHHH--S....EEEE--- CS
  RmlD_sub_bind    2 kilvtGanGqlGseLakqlae.eglevlaltre.........................eldltdaeavaellkeakpd....vvvnaAA 60  
                     ++lvtGa+G lG+ +a+ l   +g+  l l ++                         ++d++d++avaell+++  +    +vv+aA 
     KIR65898.1 1435 TVLVTGATGTLGQLMARHLVTvHGVRHLVLASRrgraaagipelcaelaelgatvtaaACDVADRDAVAELLAAIPAAhpltAVVHAAG 1523
                     589**********999887664777766664445799********************9*************966543333349999985 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.015
                     EEEEESTTSHHHHHHHHHCTT.TSEEEEEE.-TT........................T--TTSHHHHHHHH....HHH--SEEEE-- CS
  RmlD_sub_bind    2 kilvtGanGqlGseLakqlae.eglevlal.tre........................eldltdaeavaell....keakpdvvvnaA 59  
                     ++l+tG++G lG+ La+ la  +g+  l l +r+                        ++d +d++a+a+ll    +++   +vv+aA
     KIR65898.1 3208 TVLITGGTGVLGRILARHLATtHGVRHLLLaGRRgaaadgigdlvaelaeagtrvtvaACDAADPDALAALLagvpAAHPLTAVVHAA 3295
                     5899***********9998873444443333444688888888888888888888888899999999998885554444556888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 1.39u 0.32s 00:00:01.71 Elapsed: 00:00:00.52
# Mc/sec: 21268.91
//
Query:       KIR65899.1  [L=1662]
Description: acyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-92  307.9   0.1    1.8e-91  306.2   0.1    2.0  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    5.6e-80  269.2   1.1      1e-79  268.4   1.1    1.5  1  Acyl_transf_1    Acyl transferase domain
    2.9e-54  183.7   5.2    5.1e-54  182.9   1.8    2.9  3  KR               KR domain
    3.4e-44  149.6   0.3    9.6e-44  148.2   0.3    1.9  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    4.1e-14   53.0   0.0    9.1e-14   51.9   0.0    1.6  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    4.3e-13   49.6   4.4    4.3e-13   49.6   4.4    5.5  5  PKS_DE           Polyketide synthase dimerisation element dom
    4.7e-13   49.0   1.0    1.7e-11   44.0   0.1    2.7  3  adh_short        short chain dehydrogenase
    1.2e-12   48.0   0.0    3.3e-12   46.6   0.0    1.8  1  PP-binding       Phosphopantetheine attachment site
    7.9e-09   35.0   1.7    2.2e-08   33.6   1.7    1.8  1  Docking          Erythronolide synthase docking
    1.2e-06   28.2   0.1    2.2e-06   27.4   0.1    1.4  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.4e-06   27.9   2.8    1.8e-06   27.5   0.2    2.3  2  Thiolase_N       Thiolase, N-terminal domain
    0.00057   19.4   0.0    0.00091   18.7   0.0    1.3  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
     0.0051   16.0   0.0     0.0081   15.3   0.0    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0072   16.1   1.8       0.13   12.0   0.0    2.8  2  SAT              Starter unit:ACP transacylase in aflatoxin b
  ------ inclusion threshold ------
       0.11   12.1   0.2       0.27   10.7   0.2    1.7  1  NmrA             NmrA-like family


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.2   0.1   1.5e-94   1.8e-91       2     253 .]      33     283 ..      32     283 .. 0.97

  Alignments for each domain:
  == domain 1  score: 306.2 bits;  conditional E-value: 1.5e-94
                    --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllle 94 
                    ep aiv m++rfPgg+  +e++we + +grda +e+padr wd ++lydp+++ +gk++t++ggfld + +fdp++fgisprea amdpqqrllle
     KIR65899.1  33 EPLAIVSMSCRFPGGVRsPEDLWEIVADGRDALTEFPADRgWDLEALYDPDPNKPGKSYTRVGGFLDdAGAFDPTLFGISPREALAMDPQQRLLLE 128
                    799************999****************************************************************************** PP

                    HHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt  95 aawealedagltpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslr 190
                    ++wea+e+ag++p +l+gs++gvf+Gv+ ++y+   + + +++ v+ +   +g+ +++v++gris +lgl Gp+vtvdtACsSslva+h+av++lr
     KIR65899.1 129 TSWEAVERAGIDPLSLRGSSTGVFVGVSTSNYGM-GLPNVPEG-VDMYL-GTGN-TTSVASGRISFTLGLNGPAVTVDTACSSSLVALHLAVNALR 220
                    ********************************65.45555554.89999.***9.***************************************** PP

                    TTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    +ge+d+a+aGGv+++ tp+ +++fs+++ +s dgrckaf+++adG+ +GEG G++v++rl+da
     KIR65899.1 221 RGECDLAIAGGVTVMATPGVFVVFSRQRGMSVDGRCKAFAEGADGTGWGEGGGVLVVERLADA 283
                    ****************************99999***************************997 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.4   1.1   8.6e-83     1e-79       1     316 [.     580     894 ..     580     897 .. 0.98

  Alignments for each domain:
  == domain 1  score: 268.4 bits;  conditional E-value: 8.6e-83
                    EEEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHHHH CS
  Acyl_transf_1   1 vfvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpeglldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGElA 96 
                    vfvf+GqG+Q a M++ L    ++f a++a++ +a++++ +  +  vl+  +e+ l+++++vqp+L av +ala++++++Gv p+avvGHS+GE+ 
     KIR65899.1 580 VFVFPGQGAQSARMAAGLVGRTPVFDAKLAECQRALAPHLDVDLVSVLTGDDESWLERVEVVQPVLWAVGVALAAVWRAAGVVPDAVVGHSQGEIG 675
                    8*********************************************************************************************** PP

                    HHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS...HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECCCEEC CS
  Acyl_transf_1  97 aavvagalsseeallavvlrsrlmmqlagpgdmaavel..aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalvenvnvav 190
                    aa vag ls+ +a++ v+lrsr  + l g g ma+v l  ++++e+l+ ++ v +a++n+p++vv+sg+++++++lv  ++++g++a+ + v++a+
     KIR65899.1 676 AACVAGILSLDDAAKTVALRSRALAVLRGTGTMASVDLsaDAVTERLAAFPGVGVAAVNGPSTVVVSGPPQPVADLVDACQADGIRARLIPVDYAS 771
                    **************************************99999***************************************************** PP

                    TTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCHHGGG-T CS
  Acyl_transf_1 191 hspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlksaedvk 286
                    hs++v+++a+ l+++lad++p++ +    s+++ d  ++  + a+yw++nlr++v+f++av+ a++ ++ +fveispH++l++ +   l+  + + 
     KIR65899.1 772 HSAAVQDVAERLRADLADVTPQPGHTRLVSTLTGDWVDPASMTADYWYDNLRQTVQFDAAVRVAVAAGHSTFVEISPHPVLTMPVTAILD--DAGV 865
                    ********************9999999999999999******************************************************..6788 PP

                    CCCCCCTEETTSS-HHHCHHHHHHHHHHCT CS
  Acyl_transf_1 287 satlvGklkrdltdflvtflyllakahltg 316
                    +   +G+l+r+ +d   ++l++la+ah +g
     KIR65899.1 866 TGHTLGSLRRGDDD-PTRLLTNLATAHAIG 894
                    88899*********.************988 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.45   5.3e+02      39      79 ..     746     787 ..     670     792 .. 0.77
   2 ?   -2.8   0.0       4.3   5.1e+03      37      66 ..    1030    1059 ..    1017    1071 .. 0.73
   3 !  182.9   1.8   4.2e-57   5.1e-54       1     179 [.    1227    1404 ..    1227    1405 .. 0.99

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHTT-EEEE----TT.-HHHHHHHHHHHHHHS CS
          KR  39 edskaliaelealgaevevvaaDvs.dkdavealleeikaee 79 
                 +  ++l+++++a g++ +++++D + +++av+ + e+++a+ 
  KIR65899.1 746 QPVADLVDACQADGIRARLIPVDYAsHSAAVQDVAERLRADL 787
                 345569999**************6615667888888887765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.3
                  --HHHHHHHHHHHHTT-EEEE----TT-HH CS
          KR   37 adedskaliaelealgaevevvaaDvsdkd 66  
                  +++ ++a +++++a ga+v +v++  +d+d
  KIR65899.1 1030 VEPWQDACVEAVTAAGATVVAVPVSTTDAD 1059
                  566778889999999999998887666655 PP

  == domain 3  score: 182.9 bits;  conditional E-value: 4.2e-57
                  SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------T CS
          KR    1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkll 97  
                  gt l+tGG+G+LG + arwla++g +++v+ sR++ + + +++l++ l+alga+ +vv++D +d+da++al+e+i ae  p++ v+ha  vl+d+++
  KIR65899.1 1227 GTALVTGGTGALGGHAARWLARSGVQNIVVASRRGMNAPGAQQLVDDLTALGAQASVVECDAADRDALAALIESIPAEY-PLTTVVHASAVLDDAMI 1322
                  799*************************************************************************777.***************** PP

                  TT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--BT CS
          KR   98 eemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglwa 179 
                  ++   +++e+vl++Kv+ a +Lhel+ d +l  fv+fSS ag + s g +nYa  NaflDala++rr +glpa+si+wg+wa
  KIR65899.1 1323 NDIRLDQIERVLQAKVDVAYHLHELTLDLDLSAFVMFSSFAGSVASSGVGNYAPSNAFLDALAQHRRGLGLPATSIAWGAWA 1404
                  *********************************************************************************8 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.2   0.3     8e-47   9.6e-44       1     117 [.     291     408 ..     291     409 .. 0.99

  Alignments for each domain:
  == domain 1  score: 148.2 bits;  conditional E-value: 8e-47
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-GGG CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHleaA 93 
                      +avi+gsa+n+dga+n+ltapng +q+r+i++ala+a++  +dvd+veahgtgt+lgDpiE++al +++g+++  ++pl++gSvKsniGH+++A
       KIR65899.1 291 LAVIRGSALNQDGASNGLTAPNGPSQQRVIRAALANARLGTADVDMVEAHGTGTTLGDPIEAQALIATYGQDRPaDRPLWLGSVKSNIGHTQSA 384
                      69**********************************************************************99*9****************** PP

                      HHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  94 aGvaelikvvlalkhgvipptlnl 117
                      aGva+++k+v+al++gv+p tl++
       KIR65899.1 385 AGVAGMVKMVMALRNGVMPETLHI 408
                      ***********************8 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   7.6e-17   9.1e-14       1     112 []     411     544 ..     411     544 .. 0.90

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 7.6e-17
  KAsynt_C_assoc   1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk.................eeslprLlvlsgrteeav 74 
                     P+++++ ++ g + + te  pwp+       gv+sfG++G+n+HviL++++ + +++++                   +s  +++++s+r+++a+
      KIR65899.1 411 PSKHVD-WSAGAVSLLTERKPWPELDrprrGGVSSFGVSGTNAHVILEEYRPQAAAPDAGeavdteaaeaetaaaalVDSDVTVWPVSARSKAAL 504
                     899***.***************99777888********************966666666667888888888899999999*************** PP

  KAsynt_C_assoc  75 eallekleehlldaellsllneilseeisr..lpyRGyav 112
                       ++++l++h +++ +l+ ++   s +++r  +++R+ +v
      KIR65899.1 505 AGQAARLAAHVRQHGDLAPAAVGWSLATTRstFDHRAAVV 544
                     ******************9999999888888899999876 PP

>> PKS_DE  Polyketide synthase dimerisation element domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.43   5.1e+02       5      16 ..     131     142 ..     130     146 .. 0.86
   2 !   49.6   4.4   3.6e-16   4.3e-13       1      43 [.     943     991 ..     943     992 .. 0.93
   3 ?   -1.2   0.2       2.7   3.2e+03      10      22 ..    1288    1300 ..    1272    1312 .. 0.55
   4 ?   -2.8   0.4       8.1   9.7e+03       8      31 ..    1486    1511 ..    1484    1523 .. 0.52
   5 ?   -0.3   0.5       1.4   1.6e+03      11      27 ..    1597    1622 ..    1593    1631 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.43
      PKS_DE   5 WaaVereDlaaL 16 
                 W+aVer+  + L
  KIR65899.1 131 WEAVERAGIDPL 142
                 ******988766 PP

  == domain 2  score: 49.6 bits;  conditional E-value: 3.6e-16
      PKS_DE   1 DaaFWaaVereDlaaLaatLgldada......sLsavLPaLsaWRrrrr 43 
                 Da+FWaaVer+Dl+aLa+++++d++       +L+++LP L++WRr+rr
  KIR65899.1 943 DAGFWAAVERGDLTALAEAVATDDTPayealdALGPALPLLTSWRRKRR 991
                 9*********************8555899999****************9 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.7
      PKS_DE   10 reDlaaLaatLgl 22  
                   +D +aLaa  + 
  KIR65899.1 1288 AADRDALAALIES 1300
                  4555566655555 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 8.1
      PKS_DE    8 VereD.laaLaatLgl.dadasLsav 31  
                  Ve +D +++L ++L+  +a+++L+ +
  KIR65899.1 1486 VETGDgPDSLQERLAGlPAADRLAVL 1511
                  56665445666665543333334433 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 1.4
      PKS_DE   11 eDlaaLaatLgl...dada......s 27  
                   Dl+  a+ L++   d++a      +
  KIR65899.1 1597 DDLDRIADSLDVvarDEAArvratvR 1622
                  6999*******986433334444444 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.5   6.5e+03     149     171 ..     497     519 ..     490     522 .. 0.83
   2 ?    2.7   0.0     0.062        74      23      75 ..     734     787 ..     728     791 .. 0.84
   3 !   44.0   0.1   1.4e-14   1.7e-11       2     161 ..    1228    1386 ..    1227    1394 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.5
                 HHHHHHHHHHHHHHHHHHHGGGT CS
   adh_short 149 YsAsKaavagltrslakelaptg 171
                  + sKaa+ag +  la  ++++g
  KIR65899.1 497 SARSKAALAGQAARLAAHVRQHG 519
                 5669********99999999986 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.062
                 TT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTT.SHHHHHHHHHHHHHHH CS
   adh_short  23 eGakvvvvdrseekleevakelkeegakalaiqvDvt.dreevealvekavkkl 75 
                 +G ++vvv+  +++++ +++ ++++g +a  i+vD + ++++v+++ e+ +++l
  KIR65899.1 734 NGPSTVVVSGPPQPVADLVDACQADGIRARLIPVDYAsHSAAVQDVAERLRADL 787
                 688899999999************************966777888888877766 PP

  == domain 3  score: 44.0 bits;  conditional E-value: 1.4e-14
                  EEEEESTTSHHHHHHHHHHHHTT-EEEEEES....CHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGG CS
   adh_short    2 vvlvtGassGIGraiakelakeGakvvvvdr....seekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfs 94  
                  ++lvtG+++ +G   a+ la++G++ +vv++    ++  ++++++ l ++ga+a ++++D +dr+++ al+e + +++  l  +v+  ++  +++++
  KIR65899.1 1228 TALVTGGTGALGGHAARWLARSGVQNIVVASrrgmNAPGAQQLVDDLTALGAQASVVECDAADRDALAALIESIPAEYP-LTTVVHASAVLDDAMIN 1323
                  69***********************9996651222455678999999999***************************96.555555555669***** PP

                  GCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHH CS
   adh_short   95 elseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltr 161 
                  ++  +++erv++  +  +++l ++ l+        + v  sS ag v++ gv  Y+ s a++++l++
  KIR65899.1 1324 DIRLDQIERVLQAKVDVAYHLHELTLDL----DLSAFVMFSSFAGSVASSGVGNYAPSNAFLDALAQ 1386
                  ************************9999....56889**********************99999986 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   2.8e-15   3.3e-12       3      67 .]    1515    1580 ..    1514    1580 .. 0.91

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 2.8e-15
  PP-binding    3 lrelvaevlgvplee.idpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +r  va vl+ p  e +d +  +++lG+DS++avel ++l  + gv++p++ +f++pt+  la+yl
  KIR65899.1 1515 VRGQVAAVLNYPSAEsVDEHRAFRELGFDSVTAVELRNRLGSATGVALPVTLVFDYPTPTTLAEYL 1580
                  6788999****66663777888******************************************97 PP

>> Docking  Erythronolide synthase docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   1.7   1.8e-11   2.2e-08       3      25 ..       3      25 ..       2      25 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.8e-11
     Docking  3 EeKLRdYLKRvTaDLrqtRrRLr 25
                ++KLR  LKRvTaDL++t+r L+
  KIR65899.1  3 DDKLRYFLKRVTADLHDTKRKLQ 25
                8********************97 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   1.8e-09   2.2e-06       1     115 [.    1229    1361 ..    1229    1377 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.8e-09
                  EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC...........EEEE--TT-HHHHHHHHH....HHT-SEEEE--S---HHHHH CS
   Epimerase    1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledl...........elveldltdrsalerlfk....eeqpdavihlAavggvaass 81  
                  +lVtG+tG +G + ++ l++ g++ +++ +r+  + + ++++ l           ++ve+d  dr+al++l++    e+  ++v+h+ av + a  +
  KIR65899.1 1229 ALVTGGTGALGGHAARWLARSGVQnIVVASRRGMNAP-GAQQ-LvddltalgaqaSVVECDAADRDALAALIEsipaEYPLTTVVHASAVLDDAMIN 1323
                  59********************774666666533333.3222.23679******************88888761111456778****9988888888 PP

                  HSHHHHHHHHTHHHHHHHHHHHHHTCT....EEEEEEE CS
   Epimerase   82 edpadfieknlqgtlnlleaarkagvk....rllflsS 115 
                  + + d ie+ lq  ++++  +++  ++     ++ +sS
  KIR65899.1 1324 DIRLDQIERVLQAKVDVAYHLHELTLDldlsAFVMFSS 1361
                  88888888888888888777776644433448888887 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.2   1.5e-09   1.8e-06      70     116 ..     192     236 ..     175     247 .. 0.88
   2 ?   -1.1   0.2      0.83     1e+03      80     122 ..     673     715 ..     654     724 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.5e-09
                 TTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEEST CS
  Thiolase_N  70 agipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsms 116
                 +g+  + pavtv+ +csS+l a++la+++++ ge+d ++agGv  m 
  KIR65899.1 192 LGL--NGPAVTVDTACSSSLVALHLAVNALRRGECDLAIAGGVTVMA 236
                 555..779***********************************9886 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.83
                 EEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS-EEE CS
  Thiolase_N  80 tvnkvcsSglkavalaaqsiaageadvvvagGvEsmsnaptae 122
                  +  +c  g+ ++ +aa+ +a  +   +v+ G+ +m  ++ ++
  KIR65899.1 673 EIGAACVAGILSLDDAAKTVALRSRALAVLRGTGTMASVDLSA 715
                 57789*******************************9987765 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   7.6e-07   0.00091       1      74 [.    1230    1301 ..    1230    1315 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 7.6e-07
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev 74  
                     L+TG++G  G + a++L + g + +++  r   +n+   ++l +d  + l  + +++++D  D+++l  l++++
     KIR65899.1 1230 LVTGGTGALGGHAARWLARSGVQNIVVASRR-GMNAPGAQQLVDDL-TALGAQASVVECDAADRDALAALIESI 1301
                     9*********************998876665.56888889998776.56899*****************99876 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.8e-06    0.0081       2     127 ..    1230    1360 ..    1229    1365 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.8e-06
                       EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT......T-SEEEE------ CS
  Polysacc_synt_2    2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekale....elkvdvvfhaAAlKh 89  
                       lvtG++G++G +  r ++++ +++i++ +r  ++    ++ + ++l++  l ++  +v +d +d++ l+ ++e    e+   +v+ha A+  
       KIR65899.1 1230 LVTGGTGALGGHAARWLARSGVQNIVVASRRGMNAPGAQQLV-DDLTA--LGAQASVVECDAADRDALAALIEsipaEYPLTTVVHASAVLD 1318
                       8*********************************99998876.44544..5566668889******99998872222467789****99876 PP

                       HHHHHH....SHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEE CS
  Polysacc_synt_2   90 VPlvee....npleaiktNvlgtenvieaaieagvkkvvliS 127 
                         +++     ++  +++  v  + ++ e +++ + +++v+ S
       KIR65899.1 1319 DAMINDirldQIERVLQAKVDVAYHLHELTLDLDLSAFVMFS 1360
                       666655111123334445555555666666666666666655 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.1      0.19   2.2e+02     106     128 ..     665     687 ..     656     711 .. 0.83
   2 !   12.0   0.0   0.00011      0.13     195     239 ..     727     771 ..     705     772 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.19
         SAT 106 ylvGlCtGllaAaavacskslse 128
                  +vG+++G + Aa+va   sl++
  KIR65899.1 665 AVVGHSQGEIGAACVAGILSLDD 687
                 69*************98777765 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00011
         SAT 195 rvyisavssss.vtisGpPstleallksskakkkkkksklpiyapy 239
                  v ++av+++s v++sGpP+ +++l++ ++a+  + +  +p+  + 
  KIR65899.1 727 GVGVAAVNGPStVVVSGPPQPVADLVDACQADGIRAR-LIPVDYAS 771
                 56799***9998*******************999987.68876655 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00023      0.27       2      67 ..    1230    1303 ..    1229    1333 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
                  EESSTTSHHHHHHHHHHHHHT-E..EEEEES-S....-SHHHHHHHHSTTE..EEES-TT-HHHHHHHHTT-SE CS
        NmrA    2 lviGaTGrqGksvvrallkaghk..vralvRdt....kselakslkeaGve..lvkgdlddkeslvealkgvdv 67  
                  lv+G+TG++G++ +r l+++g +  v a  R       ++l++ l + G++  +v+ d+ d++ l+++++   +
  KIR65899.1 1230 LVTGGTGALGGHAARWLARSGVQniVVASRRGMnapgAQQLVDDLTALGAQasVVECDAADRDALAALIESIPA 1303
                  79*****************665422667777768888888888899999764488************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.00u 0.29s 00:00:01.29 Elapsed: 00:00:00.48
# Mc/sec: 10480.84
//
Query:       KIR65900.1  [L=1327]
Description: hypothetical protein TK50_11455 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-90  301.8   5.9    8.3e-90  300.8   2.1    2.4  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
      1e-53  182.9   0.4      1e-53  182.9   0.4    1.7  2  Acyl_transf_1    Acyl transferase domain
    2.6e-46  156.5   0.9    2.6e-46  156.5   0.9    2.3  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
      8e-21   75.2   0.4    3.5e-17   63.3   0.0    3.6  2  Thioesterase     Thioesterase domain
      1e-15   57.8   0.2    2.2e-15   56.7   0.2    1.6  1  PP-binding       Phosphopantetheine attachment site
      1e-15   58.1   0.0    2.5e-15   56.9   0.0    1.7  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    1.8e-10   40.2   3.3    5.4e-10   38.7   3.3    1.9  1  PikAIV_N         Narbonolide/10-deoxymethynolide synthase Pik
    2.7e-07   30.2   0.3    1.3e-06   28.0   0.2    2.2  3  Thiolase_N       Thiolase, N-terminal domain
    1.8e-06   28.8  14.8    1.8e-06   28.8  14.8    6.3  1  Abhydrolase_6    Alpha/beta hydrolase family
     0.0054   16.0   0.9        1.7    7.9   0.2    2.9  3  Hydrolase_4      Serine aminopeptidase, S33
     0.0064   16.3   0.0       0.27   11.0   0.0    2.5  2  Abhydrolase_5    Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.021   14.5   0.3       0.78    9.3   0.1    2.3  2  Abhydrolase_1    alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.8   2.1   5.6e-93   8.3e-90       2     253 .]      35     286 ..      34     286 .. 0.97
   2 ?    2.1   0.1     0.081   1.2e+02      95     148 ..     322     376 ..     319     404 .. 0.62

  Alignments for each domain:
  == domain 1  score: 300.8 bits;  conditional E-value: 5.6e-93
                    --EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTS.SCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggnd.veefwelLlegrdaiselpadr.wdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllle 94 
                    epvai+Gm++rfPgg+d +e +w+l+ +g da++++p dr w+ d+lyd ++   g+++++ ggfl  + dfd++ffgisprea amdpqqrllle
     KIR65900.1  35 EPVAIIGMSCRFPGGVDsPERLWDLVAAGTDAMAPFPGDRgWNMDALYDADPASRGTSYVRDGGFLYdAGDFDAAFFGISPREALAMDPQQRLLLE 130
                    79********************************************************************************************** PP

                    HHHHHHHHHTS-HHTCTTGGEEEEEEESST.HHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHH CS
  ketoacyl-synt  95 aawealedagltpeeldgsrvgvfiGvgag.dyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqsl 189
                    aawe++e+ag++p++l+g  +gv+++++++ dyaa  +l+  g+ v+++   +g+ +a+v++grisyalgl+Gp++tvdtACsSslva+h+a+q+l
     KIR65900.1 131 AAWETFERAGIDPTTLRGAPTGVYAATSSQgDYAA--LLSGVGGGVEGYL-GTGS-AAAVASGRISYALGLEGPAITVDTACSSSLVALHLACQAL 222
                    *****************************978866..45545556999*9.9999.**************************************** PP

                    HTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 190 rsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    r ge+ +alaGGv+++ tp  ++ fs+++ ls+dgrck+f+++adG+ ++EGvG+++++rl+da
     KIR65900.1 223 RLGECTLALAGGVSVMATPTVFVEFSRQRGLSTDGRCKSFAAAADGTGWSEGVGMLLVERLSDA 286
                    **************************************************************98 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.081
                    HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHH CS
  ketoacyl-synt  95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgsevkaspkavga 148
                    + ++al++aglt++++d  +   +g ++G  ++ +a la++ +d +  +a p  +g+
     KIR65900.1 322 VIRQALANAGLTAADVDVVEahgTGTTLGDPIEAQALLATYGKDRG--DAAPLLLGS 376
                    6789*********999444444599999999997755555554443..333333333 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.9   0.4   6.8e-57     1e-53       2     316 ..     568     883 ..     567     886 .. 0.94
   2 ?   -2.9   0.1       2.5   3.7e+03      76      99 ..    1168    1191 ..    1162    1197 .. 0.81

  Alignments for each domain:
  == domain 1  score: 182.9 bits;  conditional E-value: 6.8e-57
                    EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTH CS
  Acyl_transf_1   2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe....glldaiqfvqpaLaavqialaellkskGvrpaavvGHSlG 93 
                    f+f+GqG+Q  GMG+eL +  ++faa+ ++ +  +  +    + +v+ ++p      lld+++f+qpaL+a ++a++ l  + G+rp  ++GHS+G
     KIR65900.1 568 FLFTGQGAQRPGMGAELHRRFPVFAAAFDEVAAELDRHLPRPLREVVFAAPGtpeaALLDRTEFTQPALFAYEVAAYRLVTAWGLRPQQLLGHSVG 663
                    9******************************9999999999*********9989999*************************************** PP

                    HHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS.HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECCCEE CS
  Acyl_transf_1  94 ElAaavvagalsseeallavvlrsrlmmqlagpgdmaavelaeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalvenvnva 189
                     lAaa+vag ls+++a+  v+ r+rlm+ l   g+m+av  +e e +   + +v +a++n+p +vv+sg  +a+++  er++++g + +  +v+ a
     KIR65900.1 664 GLAAAHVAGVLSLADAAALVAARGRLMQALPDGGAMLAVRASEAEVAPLLDGRVALAAVNGPASVVLSGDADAVAAAGERLAAQGHRTRPLRVSHA 759
                    *****************************************99999999*********************************************** PP

                    CTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHH.HHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCHHGGG CS
  Acyl_transf_1 190 vhspqvdaiadalasaladiaprkpkvakisstsldes.serelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlksaed 284
                    +hs+ +da+  + +    +++ ++p v+  s ++  +   ++  +  ywv+ +r +vrf++ ++ +a+ +  +f+e+ p   l+a +++ l    d
     KIR65900.1 760 FHSARMDAMLADFRVVAEKVTWHPPAVPLVSDRTGAPLsAAEATDPGYWVDHVRDTVRFHAGLATLAAAGAGTFLELGPDGALTALGRECLP---D 852
                    *********9999988888888889999888777665527888999**********************************************...7 PP

                    -TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT CS
  Acyl_transf_1 285 vksatlvGklkrdltdflvtflyllakahltg 316
                    +  a+ ++  +rd+ + + t+l++la ++l g
     KIR65900.1 853 ADAAAFAPVGRRDQPE-AATLLAALAAVDLRG 883
                    8888888888******.999999998888876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.5
                     HHHHTT-TTSEEEE-TTHHHHHHH CS
  Acyl_transf_1   76 llkskGvrpaavvGHSlGElAaav 99  
                     +l++ G  p +++GHS G + a v
     KIR65900.1 1168 VLRTVGGGPFVLAGHSGGAMVANV 1191
                     5899999999******99877655 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   0.9   1.7e-49   2.6e-46       1     117 [.     294     411 ..     294     412 .. 0.98

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 1.7e-49
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-GGG CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHleaA 93 
                      +avi+gsavn+dga+ +ltapng +q+r+i++ala+ag++++dvd+veahgtgt+lgDpiE++al +++g+++   +pl +gSvKsniGH++aA
       KIR65900.1 294 LAVIRGSAVNQDGASSGLTAPNGPSQRRVIRQALANAGLTAADVDVVEAHGTGTTLGDPIEAQALLATYGKDRGdAAPLLLGSVKSNIGHTQAA 387
                      69*********************************************************************999999***************** PP

                      HHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  94 aGvaelikvvlalkhgvipptlnl 117
                      aGva++ik+vla++hgv+pptl++
       KIR65900.1 388 AGVAGVIKMVLAMRHGVLPPTLHV 411
                      ***********************8 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.088   1.3e+02      67      84 ..     654     671 ..     600     679 .. 0.83
   2 !   63.3   0.0   2.4e-20   3.5e-17       3     228 ..    1112    1319 ..    1110    1322 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.088
                   SEEEEEETHHHHHHHHHH CS
  Thioesterase  67 PyalfGhSlGgllAfevA 84 
                   P +l GhS Ggl A  vA
    KIR65900.1 654 PQQLLGHSVGGLAAAHVA 671
                   7799********998888 PP

  == domain 2  score: 63.3 bits;  conditional E-value: 2.4e-20
                    EEEE--TTC.CSGGGHHHHHHCTTCEEEEEEECSTTSTSHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEE CS
  Thioesterase    3 LflfppagG.sasvfrslasklsdpvvevlavqlpgrerdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavks 96  
                    +f++  +   + + +++ a+ +++   +v a++ pg+  +e+++ ++++l   +a++++++   gP++l+GhS G+++A  +Ar+Le+qG+++++
    KIR65900.1 1112 VFCCTMSLLsGPHEYARVAAGFRGH-RDVWALPNPGFAVGEELPADLDALLRVHADTVLRTVGGGPFVLAGHSGGAMVANVLARELERQGRPPAA 1205
                    66666666548899**********7.********************************************************************* PP

                    EEEESCCCCCCHHCHHCCCHTTHHTHHHHHCCTTHHHCCTTTHCCHHHHHHHHHHHHHHHHHTCCS-TTSCSEHHCEEEEEEGSS-CTCCCCCCC CS
  Thioesterase   97 lflidssapseteaqeasrraedeefveeltdlggtepeelledeellsellpalradyraleqyslrpeaaqklratlfngsddklkdldtlel 191 
                    ++l d+++  + e       ++ + +++ + +      +   +d+      ++a + +  +  +++  p + +    tl++    +l+++   e 
    KIR65900.1 1206 VVLMDTYPADS-E---VLGGWTGQ-LLDGMVERDS---AYTPMDD----YRTTAWAGYLPLFLTWQPAPMDSA----TLLVRATRPLGQWHG-EP 1283
                    *****888766.3...33344444.4444443332...2334455....556666666666666755555555....888999999999983.44 PP

                    HCHCHCTCESCEEEEEESSHCCHHHSHHHHHHHHHHH CS
  Thioesterase  192 aerweqktsgevsvhvlegdhfylledrleavleiie 228 
                    +  w+++++ ++     +gdhf+++ +r + ++ +++
    KIR65900.1 1284 DG-WRSRWPYPHEAVDADGDHFTMVGERGPDLAATVQ 1319
                    44.9999999999999999999999866666666665 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.2   1.5e-18   2.2e-15       2      67 .]     965    1031 ..     964    1031 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 1.5e-18
  PP-binding    2 klrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   +r+ va+vlg  ++ +i++d d+ +lG+DSl+a+el  al++e g e++ + lf+hpt+ +la++l
  KIR65900.1  965 LVRAHVATVLGHaSPGAIEADRDFLELGFDSLTALELRDALRQETGAELSATLLFDHPTPTALARHL 1031
                  699********8788889***********************************************97 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   1.6e-18   2.5e-15       1     110 [.     414     530 ..     414     532 .. 0.93

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 1.6e-18
  KAsynt_C_assoc   1 PnpeipaleegrlkVvteptpwpggi....vgvNsfGfGGsnvHviLksnkkekrkeesk..eeslprLlvlsgrteeaveallekleehlldae 89 
                     P p+++ ++ g +++ te+tpwp++     +gv++fG++G+n+H i+++++ ++++++++   +  p  +++s+r++ a+  ++ +l +hl+ ++
      KIR65900.1 414 PTPHVD-WSAGAVTLLTETTPWPDTGrprrAGVSAFGVSGTNAHTIVEQADPADAEPTRPagPPAPPVPWIVSARSAPALAGQARRLLDHLAAHP 507
                     99****.***************99888999*********************777777777666788999************************** PP

  KAsynt_C_assoc  90 llsllneilseeisr..lpyRGy 110
                     +l+ ++ ++s  ++r  lp+R+ 
      KIR65900.1 508 DLAPADVAYSLVTTRaaLPHRAA 530
                     **********9999999999975 PP

>> PikAIV_N  Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   3.3   3.6e-13   5.4e-10       4      29 ..       6      31 ..       3      32 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 3.6e-13
    PikAIV_N  4 eklVeALRaSLkEnERLRqqNrrLtA 29
                +++V ALRaSL++n+ LRqqN++L+A
  KIR65900.1  6 DEVVSALRASLLDNQKLRQQNQQLAA 31
                89***********************9 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       5.4   8.1e+03      24      48 ..     125     149 ..     119     161 .. 0.79
   2 !   28.0   0.2   8.9e-10   1.3e-06      69     119 ..     194     242 ..     176     263 .. 0.84
   3 ?   -2.3   0.0       1.5   2.3e+03      89     123 ..     719     752 ..     718     772 .. 0.72

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 5.4
                 HHHHHHHHHHHHHHHTS-GGGCCEE CS
  Thiolase_N  24 eeLlaealkallekagvdpeevdev 48 
                 + Ll ea+++  e+ag+dp ++   
  KIR65900.1 125 QRLLLEAAWETFERAGIDPTTLRGA 149
                 678999999*********9988765 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 8.9e-10
                 HTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS- CS
  Thiolase_N  69 kagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsnap 119
                 ++g+  e pa+tv+ +csS+l a++la+q+++ ge+  ++agGv  m + +
  KIR65900.1 194 ALGL--EGPAITVDTACSSSLVALHLACQALRLGECTLALAGGVSVMATPT 242
                 4555..889***********************************9998755 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHTTSHSEEEEEEEEESTTS-EEET CS
  Thiolase_N  89 lkavalaaqsiaageadvvvagGvEsmsnaptaes 123
                 l+av+  a  + +g+ad+v a G E++ ++ ++++
  KIR65900.1 719 LAAVNGPASVVLSGDADAVAAAG-ERLAAQGHRTR 752
                 6899999999*******998888.77777777665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8  14.8   1.2e-09   1.8e-06      16     192 ..    1126    1323 ..    1104    1327 .] 0.64

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.2e-09
                     HHHHHHHHCCTCEEEEE--TTS..TS-GGCS--HHHCHHH..HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC........EE.EEES-... CS
  Abhydrolase_6   16 vapLaallaagvhvlapDlpGh..Grsdpppldledladl..aalldelaagggpvvlvGHSlGGalalaaapla......lvvg.vlldppp. 97  
                     +a++aa ++++  v+a+  pG+  G  +  p dl++l+++  + +l+ +  gggp+vl GHS G+++a  +a+ +      + ++ vl+d++p 
     KIR65900.1 1126 YARVAAGFRGHRDVWALPNPGFavG--EELPADLDALLRVhaDTVLRTV--GGGPFVLAGHSGGAMVANVLARELerqgrpP-AAvVLMDTYPa 1214
                     44665555555466*********99..9999999999888745577777..59999**********8888555557777844.446*****887 PP

                     .....----TTT.S----TTHHHHHH.....TT-CCCCHCCHS-HSCCCCHHHC..........CCCHCHCCCGHHHHCCHHCHTTCCHHTT-T CS
  Abhydrolase_6   98 .....talpagl.laaalelllalla.....llrllawlsreplprlfladeda..........daawrarlarlaallaglgllpaaawadlp 170 
                          +    g+ ++ +  ++++  a      +r+ aw    +lp lfl   +a           ++    + + ++ + +++++p++a+ +  
     KIR65900.1 1215 dsevlG----GWtGQLLDGMVERDSAytpmdDYRTTAWAG--YLP-LFLTWQPApmdsatllvrATRPLGQWHGEPDGWRSRWPYPHEAVDADG 1301
                     644331....223222222222222211122555567775..244.777744422222222222333333333444666677788888999999 PP

                     TGCEEECTT-CHHHHCHHCCCH CS
  Abhydrolase_6  171 vpllvlggeDplvprllerlla 192 
                      ++ ++g++ p ++++++r+la
     KIR65900.1 1302 DHFTMVGERGPDLAATVQRWLA 1323
                     9988889999999999999998 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.2    0.0011       1.7      70     107 ..     647     683 ..     639     713 .. 0.75
   2 ?   -1.8   0.0         1   1.5e+03      47      77 ..     757     787 ..     728     789 .. 0.77
   3 !    5.2   0.0    0.0071        11      64      96 ..    1163    1198 ..    1150    1213 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0011
  Hydrolase_4  70 keehpelplfllGhSmGGliallyllrypdkvaglils 107
                  ++ ++ +p  llGhS+GGl a++++   +   +++ l+
   KIR65900.1 647 VTAWGLRPQQLLGHSVGGLAAAHVAGVLSL-ADAAALV 683
                  5667778999************99933333.2344444 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1
  Hydrolase_4  47 gkrghvpsfddyvdDlaafvekvkeehpelp 77 
                   +  h +++d +++D++ + ekv  + p  p
   KIR65900.1 757 SHAFHSARMDAMLADFRVVAEKVTWHPPAVP 787
                  5777899999999999999999987666666 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0071
  Hydrolase_4   64 afvekvkeehpelplfllGhSmGGliallyl...lr 96  
                    + ++v ++ ++ p++l GhS G+++a  ++   +r
   KIR65900.1 1163 VHADTVLRTVGGGPFVLAGHSGGAMVANVLArelER 1198
                   3346666677777********888877777655333 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.079   1.2e+02      61     111 ..     657     707 ..     635     717 .. 0.74
   2 !   11.0   0.0   0.00018      0.27      33      95 ..    1152    1217 ..    1141    1244 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.079
  Abhydrolase_5  61 vgGhslGGvvasrfaaeeekiegvvflasYPekdelselskkvlsivgteD 111
                    + Ghs+GG +a+++a   +  +++ ++a+     +    +  +l++ ++e 
     KIR65900.1 657 LLGHSVGGLAAAHVAGVLSLADAAALVAARGRLMQALPDGGAMLAVRASEA 707
                    56************9888777777777776654444444555666666555 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00018
  Abhydrolase_5   33 klPlnlavlgknkaeeiikeapklekfvvgGhslGGvvasrfaaee.e....kiegvvflasYPekde 95  
                     +lP +l  l + +a+ +++   + + fv++Ghs GG++++++ a+e e       +vv++ +YP++ e
     KIR65900.1 1152 ELPADLDALLRVHADTVLRTVGGGP-FVLAGHS-GGAMVANVLARElErqgrPPAAVVLMDTYPADSE 1217
                     6788888888889999999888755.*******.777777766654231111235699999***8544 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.06        90      65      92 ..     645     672 ..     617     686 .. 0.84
   2 ?    9.3   0.1   0.00052      0.78      26     106 ..    1134    1211 ..    1104    1232 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.06
                    HHHHHCTTSSEEEEEETHHHHHHHHHHH CS
  Abhydrolase_1  65 rildalgddkltlvGhSmGGmialayaa 92 
                    r++ a g+++  l+GhS GG+ a+++a 
     KIR65900.1 645 RLVTAWGLRPQQLLGHSVGGLAAAHVAG 672
                    6677888888899********9999885 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00052
                     HHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH.HHHHHCTTSSEEEEEETHHHHHHHHHHHHH...GGGEEEEEEESE CS
  Abhydrolase_1   26 akdgfdvillDlrGvgySspapacinddygtasvaddld.rildalgddkltlvGhSmGGmialayaaey...perVkalvllga 106 
                        + dv++l  +G++ ++  pa       ++++ ++    +l   g ++++l GhS G m+a  +a e      + +a+vl+++
     KIR65900.1 1134 RG-HRDVWALPNPGFAVGEELPAD------LDALLRVHAdTVLRTVGGGPFVLAGHSGGAMVANVLARELerqGRPPAAVVLMDT 1211
                     33.899****************95......556777766699***************9999999999887777555677777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.83u 0.27s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 9192.35
//
Query:       KIR65901.1  [L=345]
Description: daunorubicin ABC transporter ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-28   99.3   0.0    4.8e-28   98.4   0.0    1.5  1  ABC_tran       ABC transporter
      1e-07   32.1   0.4    0.00044   20.2   0.0    2.1  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    1.3e-06   28.2   0.0    2.1e-06   27.5   0.0    1.3  1  SRP54          SRP54-type protein, GTPase domain
     0.0019   18.0   1.8      0.005   16.6   0.7    2.1  2  AAA_30         AAA domain
     0.0052   17.5   0.0      0.033   14.9   0.0    2.3  2  DUF4162        Domain of unknown function (DUF4162)
     0.0061   16.0   0.2      0.051   13.0   0.2    2.0  1  SMC_N          RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.019   15.4   0.1      0.032   14.6   0.1    1.4  1  AAA_16         AAA ATPase domain
      0.065   12.1   0.1       0.29   10.0   0.1    1.8  2  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
       0.14   12.6   1.9        7.4    7.0   1.9    3.0  1  AAA            ATPase family associated with various cellular
       0.16   12.5   0.8       0.26   11.8   0.8    1.2  1  AAA_23         AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.0   2.7e-31   4.8e-28       2     136 ..      23     165 ..      22     166 .. 0.96

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 2.7e-31
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 + +s+++ +ge+ +++G+nGaGK+t + +l+  ++ t+G+  + g+d+ + +   +r+ ++v+pq  +l++ ltvr+n              +++++++
  KIR65901.1  23 DGLSFSVAAGEVFGLLGPNGAGKTTTIGVLTTRVRATSGRAVVCGADVVR-SPAAARQLLAVVPQRVNLDRALTVRQNllfhsayhrvsrsVRTKRADE 120
                 789***********************************************.88999*****************************99988777788*** PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +l+++glk++++ +       LSgG  qr ++aral+ +pk+l+lDEp+
  KIR65901.1 121 LLEQMGLKDFANART----DFLSGGLAQRTMIARALMHAPKVLFLDEPS 165
                 ***********9999....9****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.2   0.00032      0.57       2      19 ..      35      52 ..      34      60 .. 0.87
   2 !   20.2   0.0   2.4e-07   0.00044     258     298 ..     156     196 ..     137     199 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00032
      AAA_21  2 nvliGpNgsGKSnLLdal 19
                 +l GpNg+GK++ +  l
  KIR65901.1 35 FGLLGPNGAGKTTTIGVL 52
                689**********88666 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 2.4e-07
      AAA_21 258 gsllliDEpEngLHPkllrrll..ellkelsrngaQviltTHS 298
                 +++l++DEp  gL+P  ++rl+  + + el++ g+ v++tTH+
  KIR65901.1 156 PKVLFLDEPSGGLDP--QSRLFvhDRIAELKQAGVTVVVTTHD 196
                 29*************..888888*999888888*********8 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.2e-09   2.1e-06       5      56 ..      36      89 ..      33     122 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.2e-09
                EEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSS.TTHHHHHHH.HHHHTT CS
       SRP54  5 llvGlqGaGKTttlaKLaallkkegkkvllvaaDtfR.aaAveQLkt.laeklg 56
                 l+G++GaGKTtt++ L  ++++   +++++ aD+ R +aA+ QL + + ++++
  KIR65901.1 36 GLLGPNGAGKTTTIGVLTTRVRATSGRAVVCGADVVRsPAAARQLLAvVPQRVN 89
                589**********************************65778887540445555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.7   2.8e-06     0.005      20      63 ..      34      81 ..      27     169 .. 0.66
   2 ?   -0.3   0.0      0.42   7.5e+02      43      68 ..     184     209 ..     175     256 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.8e-06
      AAA_30 20 vavltGpAGtGKttalkalreaweaa.ggrviglA...ptgkaAkvLa 63
                v  l Gp G+GKtt++++l+  ++a  g+ v+  A    + +aA++L 
  KIR65901.1 34 VFGLLGPNGAGKTTTIGVLTTRVRATsGRAVVCGAdvvRSPAAARQLL 81
                77899**************88887777999998772223555666654 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.42
      AAA_30  43 eaaggrviglAptgkaAkvLaeelgi 68 
                 ++ag +v++ ++    A++L + +gi
  KIR65901.1 184 KQAGVTVVVTTHDMDEAEKLCDRVGI 209
                 67799999999999999999998887 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.4   2.6e+03      38      57 ..     232     251 ..     171     264 .. 0.55
   2 !   14.9   0.0   1.9e-05     0.033      54      80 ..     312     339 ..     297     340 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.4
                 S-EEEEE------------- CS
     DUF4162  38 gelelkledeeaanellkal 57 
                 ++l+l +  ++ a+++ +al
  KIR65901.1 232 STLTLVVAAGAPAEDVQAAL 251
                 33455555555555555555 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.9e-05
                 ----.----EEEEEEEE---HHHHHHHH CS
     DUF4162  54 lkal.tsgveirsFeeeePsLndIFiek 80 
                 lk l + ++e+r ++  +PsL+d+Fi++
  KIR65901.1 312 LKILtDLRCEVRDLSIGQPSLEDVFIHL 339
                 555533599*****************97 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   2.8e-05     0.051      29     211 ..      37     209 ..      28     215 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.8e-05
                 EEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  29 ivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsell 127
                 ++GpNG+GK+  +  +         + +r+++ ++++   +  +s   a+ +++   +++     +  +++++++    +s y+   ++v+ k   ell
  KIR65901.1  37 LLGPNGAGKTTTIGVL----T----TRVRATSGRAVVCGADVVRSPAAAR-QLLAVVPQRV--NLDRALTVRQNLL--FHSAYHRVSRSVRTKRADELL 122
                 6788888888766544....3....3678888888888733333333333.3322222222..1222233333333..345688888999999999999 PP

                 HCTT-STT......CS-HH..HHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxx......xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 128 esagiske......lLSgG..ektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgv 211
                 e++g++         LSgG  ++t++a aL+       p+ l +lDe    LD + +  v +++ e ++  + ++v++++ +  ek    vg+
  KIR65901.1 123 EQMGLKDFanartdFLSGGlaQRTMIARALM-----HAPKVL-FLDEPSGGLDPQSRLFVHDRIAELKQAgVTVVVTTHDMDEAEKLCDRVGI 209
                 999997544455559****888888888888.....446655.58********************9997757788888887777776555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   1.8e-05     0.032      26     142 ..      34     162 ..      25     201 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-05
      AAA_16  26 lvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala...avpelagaea.... 116
                 +  l G+ G GK++ +  l ++++++     +g+++ +++++ +s+  a++l    ++ q  + +++  +++   +  +  +   +v+  +++e     
  KIR65901.1  34 VFGLLGPNGAGKTTTIGVLTTRVRAT-----SGRAVVCGADVVRSPaAARQL-L-AVVPQRVNLDRALTVRQNLLFHSAYHRvsrSVRTKRADELleqm 125
                 55689***************977776.....788888877766777666666.4.56666666644433333333222222233322222222224444 PP

      AAA_16 117 ..srllellkrll.allsrder.........plvlvlD 142
                   ++++++ +++l   l++ +          p vl+lD
  KIR65901.1 126 glKDFANARTDFLsGGLAQ-RTmiaralmhaPKVLFLD 162
                 5566666666666443333.224555555555666666 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00016      0.29      18      49 ..      35      66 ..      21      70 .. 0.87
   2 ?   -1.1   0.0      0.38   6.9e+02     262     284 ..     177     199 ..     159     203 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00016
  TrwB_AAD_bind 18 ilivGttGsGKtqalekllrairargdraivl 49
                   + ++G  G+GKt+++  l + +ra   ra+v 
     KIR65901.1 35 FGLLGPNGAGKTTTIGVLTTRVRATSGRAVVC 66
                   6789**************************96 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.38
  TrwB_AAD_bind 262 ksllaegRkfGgavvlglqsiaq 284
                    ++ +ae+++ G+ vv++ +++  
     KIR65901.1 177 HDRIAELKQAGVTVVVTTHDMDE 199
                    678999***********999865 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   1.9    0.0041       7.4       3      25 ..      37      59 ..      35     213 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0041
                EESSTTSSHHHHHHHHHHHHTHE CS
         AAA  3 lyGppGtGKTllakavakelgve 25
                l Gp G GKT+++  + + + ++
  KIR65901.1 37 LLGPNGAGKTTTIGVLTTRVRAT 59
                78*********999998886433 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.8   0.00014      0.26      21      36 ..      34      49 ..      25      54 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
      AAA_23 21 ltlItGpNGaGKTTil 36
                ++ + GpNGaGKTT +
  KIR65901.1 34 VFGLLGPNGAGKTTTI 49
                78899*********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2638.19
//
Query:       KIR65902.1  [L=277]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-19   68.4  19.4    8.9e-19   67.7  19.4    1.2  1  ABC2_membrane    ABC-2 type transporter
    5.7e-07   29.0  17.4    5.7e-07   29.0  17.4    1.5  1  ABC2_membrane_3  ABC-2 family transporter protein
  ------ inclusion threshold ------
      0.012   15.4   1.8      0.012   15.4   1.8    2.2  2  Gly-zipper_OmpA  Glycine-zipper domain
        1.2    9.0   5.1       0.42   10.4   2.2    1.7  2  DUF2427          Domain of unknown function (DUF2427)
        1.4    9.1   7.8        6.6    6.9   0.7    2.6  2  Bacteriocin_IIc  Bacteriocin class II with double-glycine lea


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7  19.4   2.5e-22   8.9e-19       3     207 ..      28     237 ..      26     239 .. 0.89

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 2.5e-22
  ABC2_membrane   3 ikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnr..pgllffsvlflafsaltsvapvferergvlerelvsplyslsa 95 
                    ++a+l+r++    r    +++  ++qpl+++l+fg v  +lg  s+d++n   pg+++  ++ +++ +++  +++ ++  + +e  l sp+   + 
     KIR65902.1  28 FRAVLWRDMFVTSRELGAFFAQVFLQPLFMLLIFGKVLTSLGyASNDFANVllPGVIALNAFLIGLENTALPMVMDFSFTREIEDRLLSPM-AIPL 122
                    899***************************************87777776688***********955555445555566666788888999.9*** PP

  ABC2_membrane  96 yvlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm...p 186
                    +++ k+++ ++++++++++++ i  +++g+++     + +l +l + a+++ ++gl +++l+p  + ++++ ++ ++pl++++   +p+ ++   p
     KIR65902.1 123 VAFEKIVFGAIRGVIAGVVLIPIGMLMLGVTWPlsTLLPVLGVLTAGAMVGAAMGLTFGTLVPP-HRIQIMFTVTMTPLMFTGATQFPLRALdqlP 217
                    ********************************9855599999999999**************97.6678899999**************9999656 PP

  ABC2_membrane 187 kwlqwiaylnPltyavealrs 207
                     w+q i+ lnPlty+ ea rs
     KIR65902.1 218 -WFQVICALNPLTYVSEATRS 237
                    .*****************998 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0  17.4   1.6e-10   5.7e-07     152     344 ..      68     268 ..      60     269 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.6e-10
  ABC2_membrane_3 152 leeelsnvasflvg.liliilifitasfiavsiveE.kesrikelqlvsgvsplqywlskilgdflvyllqlllil.l..lafglgipfgnlgl 240
                      l   ++++a+ l++ +i++ +++i++ ++a  +v +   +r +e  l+s++      + ki++ ++ +++  ++++ +  l++g+ +p + l+ 
       KIR65902.1  68 LGYASNDFANVLLPgVIALNAFLIGLENTALPMVMDfSFTREIEDRLLSPMAIPLVAFEKIVFGAIRGVIAGVVLIpIgmLMLGVTWPLSTLLP 161
                      556778899998888999999999999998877665244788888899999999999999999999999998776632445999899999**** PP

  ABC2_membrane_3 241 llllfllfglayialgyllsslfknsetaqilifivilllsgffggl.fpledlp..salkwifsiiPffapglgllrli..tgdplweillsl 329
                      +l ++  ++++ +a+g+ +++l+  ++   +++f v++++++f g++ fpl +l+   ++++i  ++P+++++++  +l+   g++ ++++l+l
       KIR65902.1 162 VLGVLTAGAMVGAAMGLTFGTLVPPHRI--QIMFTVTMTPLMFTGATqFPLRALDqlPWFQVICALNPLTYVSEATRSLVapPGVQSVPLWLDL 253
                      ************************8876..55666666677777777699999999999********************9896666789***** PP

  ABC2_membrane_3 330 iilalfavvylllal 344
                      i+la+ +v++ ++++
       KIR65902.1 254 IVLAGVFVLFSAIGI 268
                      **********99986 PP

>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.5       0.2   7.1e+02      32      41 ..     131     140 ..     129     142 .. 0.64
   2 ?   15.4   1.8   3.3e-06     0.012      26      43 ..     167     184 ..     162     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.2
  Gly-zipper_OmpA  32 GAasGavaGl 41 
                      GA+ G++aG 
       KIR65902.1 131 GAIRGVIAGV 140
                      6667777664 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 3.3e-06
  Gly-zipper_OmpA  26 GtGAaiGAasGavaGllr 43 
                       +GA++GAa+G+++G+l+
       KIR65902.1 167 TAGAMVGAAMGLTFGTLV 184
                      68*************985 PP

>> DUF2427  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.1   7.6e+03      62      70 ..      55      63 ..      45      81 .. 0.54
   2 ?   10.4   2.2   0.00012      0.42      25      89 ..     135     201 ..     126     211 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.1
     DUF2427 62 lllghiykg 70
                l++++i+++
  KIR65902.1 55 LFMLLIFGK 63
                344444443 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00012
     DUF2427  25 mtlalvvvyPval.vLslak.srwylpvqivnlvlavlglllghiykgstPelypnniyaklswill 89 
                  ++a vv+ P+++ +L+++   ++ lpv+ v ++ a++g+++g+++++  P    + +++ + + l+
  KIR65902.1 135 GVIAGVVLIPIGMlMLGVTWpLSTLLPVLGVLTAGAMVGAAMGLTFGTLVPPHRIQIMFTVTMTPLM 201
                 689999******8355665578999**********************99986544444555555555 PP

>> Bacteriocin_IIc  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   1.3     0.006        21      27      53 ..     127     152 ..     124     155 .. 0.83
   2 ?    6.9   0.7    0.0019       6.6      26      42 ..     164     182 ..     157     206 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.006
  Bacteriocin_IIc  27 givggalaGaatGaatlgilgaavGav 53 
                       iv ga  G+++G++ l+++g+   +v
       KIR65902.1 127 KIVFGAIRGVIAGVV-LIPIGMLMLGV 152
                      6899***********.88888776665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0019
  Bacteriocin_IIc  26 ggivggalaGaatGaa..t 42 
                      g++ +ga+ Gaa+G +  t
       KIR65902.1 164 GVLTAGAMVGAAMGLTfgT 182
                      4566777777777777331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1979.19
//
Query:       KIR65903.1  [L=467]
Description: AMP-dependent synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-52  177.0   0.1    6.8e-52  176.5   0.1    1.2  1  AMP-binding    AMP-binding enzyme
    1.3e-16   61.3   0.3    1.3e-16   61.3   0.3    2.2  2  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.5   0.1   7.5e-56   6.8e-52       9     416 ..      15     368 ..       7     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: 176.5 bits;  conditional E-value: 7.5e-56
                  TTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCC CS
  AMP-binding   9 pdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdsel 106
                  pd+v +     g+ l+ + l  +vn++A  +r         Va+ + +s+e vva++++++aG+ +vpl p+  a+e   il++s+a+vl+       
   KIR65903.1  15 PDAVRV----AGRMLSSEALLGCVNAVADRIRG-----AAAVAVDATPSLETVVAMVGAVQAGVPLVPLPPRADARERGRILRESGATVLL-G----- 97 
                  555544....45666666677777777777764.....578**************************************************.2..... PP

                  HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSCCTTT-E CS
  AMP-binding 107 leklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfklkeddv 204
                    ++ +aa++ +av++ + +   +++    l  +++ +     + ++ e++pd  a+i+YT+G  G P GV +s r+++a +  l   + ++ + +dv
   KIR65903.1  98 --RAPSAAPA-PAVAAGLATV--PVD----LSRRSS-A-----H-QP-EPHPDADAVILYTGGASGPPRGVRVSRRAIAADLDLL--ADAWRWNGEDV 176
                  ..23333333.2222222222..111....222221.1.....2.22.4789999**************************9886..456666789** PP

                  EEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT-SEEEEESS-EBHHHHH CS
  AMP-binding 205 vlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sgalkaakkakdlsslrlvllggeplspellr 301
                  v++ +pl+ ++gl+++ll+al  G++ v l++daa      ++ +     t+  +vP  + ++ + ++  +      +ls+ r+++++ +pl p++++
   KIR65903.1 177 VVQGAPLFRAYGLVVGLLGALRTGSRFVHLDRDAA------AGPVG----TMYLAVPGQWARISRdHPWAR------SLSGARILVSADAPLAPAVTE 258
                  *****************************998877......34566....99***********99787666......9******************** PP

                  HHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEE.TTSE.EEEEEEETTS-SEBTT-HHHHHHHEEETCCEEE CS
  AMP-binding 302 ffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvp.dgee.GellvrgpgvmkgYlkkpeataeafdsegrwlr 397
                  ++r l+ +++++gYG TEt+++vt  + + +   +g++G+plpgv+ +i+D +  +pvp dge+ Gel +rgp++ +gY     + a+a     +w  
   KIR65903.1 259 RLRLLTSHSLIQGYGTTETLIAVT-GRVDAP-CAAGTAGTPLPGVQTRILDRD-DRPVPaDGESvGELSIRGPTLSSGYVDGRGRCADAA----GWHA 349
                  ******99***************9.664444.5789****************9.88888577779***************9989999986....5*** PP

                  EEEEEEEETTSEEEEEEEC CS
  AMP-binding 398 TGDlgrldedGyleivgRk 416
                  TGDl+++ +dG+ +i+gR 
   KIR65903.1 350 TGDLATVAADGSHRIIGRR 368
                  ******************7 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.7      0.22   1.9e+03      17      32 ..      34      49 ..      32      74 .. 0.59
   2 !   61.3   0.3   1.4e-20   1.3e-16       2      75 ..     385     456 ..     384     457 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.22
                   EE-----TTS---EEE CS
  AMP-binding_C 17 VvGvpdevkGealvaf 32
                   V +v d ++G a+va+
     KIR65903.1 34 VNAVADRIRGAAAVAV 49
                   5566666666666654 PP

  == domain 2  score: 61.3 bits;  conditional E-value: 1.4e-20
                    HHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsG 75 
                    vE++l+s p+V++aaVvG p++ +Ge + a+Vv ++g   +++ L++hv ++l +  +p++v+fvdelp+ + G
     KIR65903.1 385 VEEVLLSYPGVRDAAVVGTPHAGQGEQVTAYVVAAEGL--TAQVLIDHVGRHLSAGQRPRRVHFVDELPRSAQG 456
                    9********************************98784..47****************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3546.43
//
Query:       KIR65904.1  [L=220]
Description: 4'-phosphopantetheinyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-27   95.7   0.4    3.3e-27   94.4   0.4    1.7  1  4PPT_N    4'-phosphopantetheinyl transferase N-terminal domai
    2.6e-11   43.7   0.0    6.7e-11   42.3   0.0    1.6  2  ACPS      4'-phosphopantetheinyl transferase superfamily


Domain annotation for each model (and alignments):
>> 4PPT_N  4'-phosphopantetheinyl transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.4   3.7e-31   3.3e-27       1      67 [.      27      93 ..      27      94 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 3.7e-31
      4PPT_N  1 eeeelirkavakRkaeFlaGRicAraalarlgleavpllsgerraPlwpaglvgSIsHtdglaaAav 67
                eee+l+++av+kR++eF++ R+cAr+al++lg++++p++sg+r+aP+wpag+vgS++H++g+ aA+ 
  KIR65904.1 27 EEERLVANAVDKRRREFTTVRHCARRALRELGIAETPIVSGARGAPVWPAGVVGSMTHCEGYRAAVL 93
                799**************************************************************96 PP

>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.39   3.5e+03      30      55 ..      26      51 ..      10      54 .. 0.69
   2 !   42.3   0.0   7.5e-15   6.7e-11       2      88 ..     102     182 ..     101     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.39
                HHHHHHHTT--HHHHHHHHHHHHHHH CS
        ACPS 30 eeErkllkssdeearaelfarlWaaK 55
                +eE +l++++ +++r e+ +++ +a 
  KIR65904.1 26 PEEERLVANAVDKRRREFTTVRHCAR 51
                56666666666666657778777775 PP

  == domain 2  score: 42.3 bits;  conditional E-value: 7.5e-15
                 EEEEEEEHHHHH.HHH-----HHHHHS-HHHHHHHTT--HHHH.HHHHHHHHHHHHHHHHHTTS-SSSS--GGG-EEEE-TTS-EEEE CS
        ACPS   2 vGiDieklsrlrkrvkrrgakilkrifteeErkllkssdeear.aelfarlWaaKEAllKalgpglrklldfksievledstgrptle 88 
                 +GiD e          + ++++l+ i  ++Er + ++  ++ + + +  +l++aKE+++Ka++p  +++ldf +++++ d+ g++ ++
  KIR65904.1 102 LGIDAE---P----HAPLPEGVLDAIALPAERTRTAALAAAHPtVCWDRLLFCAKESVYKAWFPLTGRWLDFAEADIVVDAGGTFVAH 182
                 7*****...3....334899*****************77777779999******************************9999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1664.30
//
Query:       KIR65905.1  [L=469]
Description: acyl-CoA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-71  238.7   0.1      3e-70  237.0   0.1    1.7  1  AMP-binding    AMP-binding enzyme
    8.6e-19   68.3   0.3    8.6e-19   68.3   0.3    2.0  2  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.0   0.1   3.3e-74     3e-70       3     421 ..       9     378 ..       7     380 .. 0.85

  Alignments for each domain:
  == domain 1  score: 237.0 bits;  conditional E-value: 3.3e-74
                  HHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEE CS
  AMP-binding   3 eqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvlia 100
                  e+a+ +pd+v +    +++ +++ el++ ++++A  L        drVa+ + +++e vv ++++l aGa+vvp+ p+ ++ e ++il+ds+a++l+ 
   KIR65905.1   9 ESADDRPDAVRV----DDRAVSWVELRRLATAVADDLGG-----VDRVAVEATPTLETVVGVVGALLAGAAVVPVPPDAGPMEREHILRDSGATALL- 96 
                  788899999988....5799*******999999998854.....699**************************************************. PP

                  TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSC CS
  AMP-binding 101 tvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfk 198
                  +          +a        +    d +++    +l  ++  +      + ++e++p  +a+i+YTSGTTG PKG+++  r+++a +  l   + + 
   KIR65905.1  97 A----------PAG------GTGPAGDGGPPVIPVDLARRS--D------TVHPEPDPAATALILYTSGTTGAPKGAVIGRRAVAACLDGL--ADAWA 168
                  2..........111......222233333333332233333..2......1344689*****************************99997..56677 PP

                  CTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EB CS
  AMP-binding 199 lkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggepls 296
                   +++d +++ lpl+h+ gl+l++l++l  G++++ + +  +       e  ++ + tv +gvP+v+ +++++++ +     + l   rl+++g ++l+
   KIR65905.1 169 WTPEDLLVHGLPLFHVHGLVLGVLGPLRLGSRLHHVGRPRP-------ERYAAAGGTVYFGVPTVWSRIAADPDSA-----RALRPARLLVSGSAALP 254
                  789*******************************9985544.......4567789**************9976555.....36777************ PP

                  HHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSE.EEEEEEETTS-SEBTT-HHHHHHHEEETC CS
  AMP-binding 297 pellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgee.GellvrgpgvmkgYlkkpeataeafdseg 393
                  +++   + al+g+ev+e YG+TEt++ v+ ++ +++ +++g+vG plpgv+ ++vDe++  + +dge  Gel v gp++++gYl++p+a a +   ++
   KIR65905.1 255 AAVFADLAALTGHEVVERYGMTETLITVS-ARADGP-RRPGTVGVPLPGVRTRLVDEHGAALPADGEAmGELQVAGPTLFEGYLGRPDADAATRA-PD 349
                  ****************************9.775566.789******************7777779999*************************98.76 PP

                  CEEEEEEEEEEETTSEEEEEEECC.CEEE CS
  AMP-binding 394 rwlrTGDlgrldedGyleivgRkk.dlik 421
                  +w+rTGD++++ +dG  +ivgR+  dlik
   KIR65905.1 350 GWFRTGDVATIGPDGWHRIVGRAAtDLIK 378
                  7*********************7425665 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       1.6   1.4e+04      30      33 ..      59      62 ..      40      84 .. 0.57
   2 !   68.3   0.3   9.6e-23   8.6e-19       1      76 []     388     460 ..     388     460 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.6
                   EEEE CS
  AMP-binding_C 30 vafV 33
                   v++V
     KIR65905.1 59 VGVV 62
                   3333 PP

  == domain 2  score: 68.3 bits;  conditional E-value: 9.6e-23
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE----.--HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgs.ealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    evE al++hp+V+eaaVvG p++  G+ + a+Vv  dg+      eL+++v+++l ++++p++v++v++lp+++ GK
     KIR65905.1 388 EVEDALLAHPGVREAAVVGTPHPDLGQQVTAYVVG-DGVdG---PELIDFVARQLSAHKRPREVRLVEALPRNALGK 460
                    8*********************************8.46422...7*****************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 3076.24
//
Query:       KIR65906.1  [L=313]
Description: sulfate ABC transporter ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-29  101.0   0.0    1.1e-28  100.5   0.0    1.3  1  ABC_tran       ABC transporter
    2.8e-10   40.5   0.0    4.7e-05   23.3   0.0    2.2  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    4.2e-05   24.2   0.0    0.00018   22.2   0.0    2.1  1  DUF4162        Domain of unknown function (DUF4162)
    4.3e-05   23.0   0.0      0.024   14.1   0.0    2.2  2  SMC_N          RecF/RecN/SMC N terminal domain
    0.00016   21.4   0.8     0.0015   18.3   0.8    2.1  1  AAA_30         AAA domain
    0.00093   18.7   0.0     0.0022   17.5   0.0    1.6  1  KdpD           Osmosensitive K+ channel His kinase sensor dom
     0.0013   18.5   0.0     0.0024   17.7   0.0    1.4  1  ATP_bind_1     Conserved hypothetical ATP binding protein
     0.0043   17.6   0.1     0.0072   16.9   0.1    1.3  1  AAA_23         AAA domain
  ------ inclusion threshold ------
      0.012   14.6   0.1      0.021   13.8   0.1    1.4  1  MeaB           Methylmalonyl Co-A mutase-associated GTPase Me
      0.033   14.6   1.4      0.071   13.5   1.4    1.9  1  AAA_16         AAA ATPase domain
      0.039   13.5   0.0      0.093   12.3   0.0    1.5  1  AAA_27         AAA domain
       0.04   14.2   0.1        2.6    8.3   0.0    3.0  2  SbcCD_C        Putative exonuclease SbcCD, C subunit
      0.042   14.1   0.2       0.17   12.2   0.1    2.1  2  AAA_22         AAA domain
      0.061   13.0   0.1         19    4.9   0.0    3.1  3  IstB_IS21      IstB-like ATP binding protein
       0.14   11.9   0.0       0.33   10.7   0.0    1.5  1  AAA_29         P-loop containing region of AAA domain
       0.16   11.8   0.1       0.29   10.9   0.1    1.3  1  Lantibiotic_a  Lantibiotic alpha


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.0   9.7e-32   1.1e-28       2     136 ..      20     157 ..      19     158 .. 0.96

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 9.7e-32
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........HHHTCHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren........esdeeiekalskl 92 
                 ++vs+++++ge+ +++G+nGaGK+t ++++ gl + + G++++ g d  + +++++r+++g   qe+ql ++l+vre           +++i+++l+ l
  KIR65906.1  20 DDVSFTVEQGEIFGVLGPNGAGKTTTVECVQGLRRADGGTVRVLGLDPVR-DRTEVRQRVGAQLQESQLPDKLRVREAldlyrsfyRNRADIDELLDDL 117
                 89******************************************988888.8*******************************99888888******** PP

                 TTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  93 glkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 gl+  +dt      ++LSgGqkqr+++a al+ +p++ +lDE t
  KIR65906.1 118 GLTAQRDTAF----HKLSGGQKQRLSVALALVGRPEIAILDELT 157
                 *********9....****************************87 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.5e-05     0.016       2      26 ..      32      59 ..      31      86 .. 0.76
   2 !   23.3   0.0   4.2e-08   4.7e-05     228     297 ..     121     187 ..      82     188 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.5e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl...d 26
                 ++ GpNg+GK++  ++ ++l+r+    
  KIR65906.1 32 FGVLGPNGAGKTTTVECVQGLRRAdggT 59
                6799*****************9865551 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 4.2e-08
      AAA_21 228 dgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                   +++ +++lS G+k+ l +++al  ++    + ++DE+ +gL+P+  r  ++l+++ +++g+ v+l+TH
  KIR65906.1 121 AQRDTAFHKLSGGQKQRLSVALALVGRP---EIAILDELTTGLDPQGRRDTWDLVERIRDRGVTVVLVTH 187
                 4567899******************999...99************************************* PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.6e-07   0.00018      18      80 ..     229     295 ..     219     296 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.6e-07
                 E....-------..---EEEE-TTS-EEEEE-------------.----EEEEEEEE---HHHHHHHH CS
     DUF4162  18 e....adaeelleepgveeveeeggelelkledeeaanellkal.tsgveirsFeeeePsLndIFiek 80 
                 +     d++ l+++p+v+ v++ g+e++++ ++ ++ +++l+al +++v+   +++e+P+L+d F+ +
  KIR65906.1 229 RpldpVDDALLAALPEVTGVRRSGDEVTVTGPE-QVLQTVLSALaEQKVRYAGLRVEQPTLDDAFVSL 295
                 4543455666778899********988888775.9*********78*******************976 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0036         4      26      44 ..      31      49 ..      10      56 .. 0.83
   2 !   14.1   0.0   2.1e-05     0.024     120     207 ..     107     194 ..      92     205 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0036
                EEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldAi 44
                +  ++GpNG+GK+  ++ +
  KIR65906.1 31 IFGVLGPNGAGKTTTVECV 49
                55699********998876 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SC CS
                 xxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
       SMC_N 120 kkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadk 207
                 ++++ ell + g++ +       LSgG+k+ +++aL +    v +  + +lDe+   LD + ++   +l+++ +++ + ++   l ++++e+a++
  KIR65906.1 107 RADIDELLDDLGLTAQrdtafhKLSGGQKQRLSVALAL----VGRPEIAILDELTTGLDPQGRRDTWDLVERIRDRgVTVV---LVTHFMEEAER 194
                 57889999999998888888889*******98888764....5666799**************999999987775532222...22334444443 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.8   1.3e-06    0.0015      17     122 ..      28     185 ..      22     188 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.3e-06
      AAA_30  17 gdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkv.La.......................................eelgieastiak 75 
                 +  +  + Gp G+GKtt+++ ++ + +a+gg+v +l       ++ ++                                       ++lg++a+    
  KIR65906.1  28 QGEIFGVLGPNGAGKTTTVECVQGLRRADGGTVRVLGLDPVRDRTeVRqrvgaqlqesqlpdklrvrealdlyrsfyrnradidellDDLGLTAQ---- 122
                 44577899*********************966666554433322224413334444444444444444444444444333333333335555554.... PP

      AAA_30  76 llkrlk.................grarlepgtllivDEagmv....dtkqlaallkaaekagakvilv 122
                      +                 + a + + ++ i DE        + +++ +l+++++++g++v+lv
  KIR65906.1 123 -----RdtafhklsggqkqrlsvALALVGRPEIAILDELTTGldpqGRRDTWDLVERIRDRGVTVVLV 185
                 .....044444455588899997545566679999999988667779999999999999999999998 PP

>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.9e-06    0.0022      44     120 ..     106     184 ..      98     221 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.9e-06
        KdpD  44 grketeallegleviprkev...eykgkeleeldldailarkpevvlvDelahtnapgsrhekryqdveelLeagidVit 120
                 +r+++++ll++l +  ++ +   + +g + ++l++  +l  +pe++++Del     p+  ++  ++ ve++ ++g+ V+ 
  KIR65906.1 106 NRADIDELLDDLGLTAQRDTafhKLSGGQKQRLSVALALVGRPEIAILDELTTGLDPQG-RRDTWDLVERIRDRGVTVVL 184
                 6889999999999988777611145678899********************98765554.5678************9863 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.1e-06    0.0024       1      38 [.      34      71 ..      34      98 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.1e-06
  ATP_bind_1  1 vvGpaGsGKttfvgalseilelrgrsvavvNLDPAaee 38
                v+Gp G+GKtt v+ ++ ++++ g +v+v+ LDP  ++
  KIR65906.1 34 VLGPNGAGKTTTVECVQGLRRADGGTVRVLGLDPVRDR 71
                89********************************8775 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   6.4e-06    0.0072      20      39 ..      30      49 ..      16      52 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.4e-06
      AAA_23 20 gltlItGpNGaGKTTildAi 39
                 ++ + GpNGaGKTT ++++
  KIR65906.1 30 EIFGVLGPNGAGKTTTVECV 49
                68999*************97 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.9e-05     0.021      29      72 ..      29      72 ..      15      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.9e-05
                SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE------- CS
        MeaB 29 aqvvGltGvPGaGkstlvealglelrrrGkrvavlavDPsspft 72
                 +  G+ G  GaGk t+ve +    r+ G  v vl +DP   +t
  KIR65906.1 29 GEIFGVLGPNGAGKTTTVECVQGLRRADGGTVRVLGLDPVRDRT 72
                5678*****************999999************87665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.4   6.4e-05     0.071      25      93 ..      30      89 ..      18     277 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.4e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekd.ggif..lrgkcdqlesaipysalaqalareellrqlldeaesae 93
                e+  + G+ G GK++ v++++  l+++ gg +  l  + ++              + ++ + + l+e++  +
  KIR65906.1 30 EIFGVLGPNGAGKTTTVECVQG-LRRAdGGTVrvLGLDPVRD-----------RTEVRQRVGAQLQESQLPD 89
                77889****************5.6665234443222222222...........2222233333333332222 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.3e-05     0.093      10      49 ..      12      52 ..       6      54 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.3e-05
      AAA_27 10 ryG.kftdrsldfsaeeadlhliyGpNEAGKstalrAisdl 49
                ryG k++   ++f  e+ ++  ++GpN AGK+t+++ ++ l
  KIR65906.1 12 RYGdKIAVDDVSFTVEQGEIFGVLGPNGAGKTTTVECVQGL 52
                6774466678889989999999*************998876 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0023       2.6      17      82 ..     111     166 ..      94     174 .. 0.59
   2 ?    0.8   0.0      0.51   5.7e+02      60      82 ..     279     301 ..     259     304 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0023
     SbcCD_C  17 r...dedgkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesia 82 
                     d+ g + + ++ + +lSGG+kq  +++ala+     ++       ++++ +LDE   +lD++ ++
  KIR65906.1 111 DellDDLGLTAQRDTAFHKLSGGQKQ-RLSVALAL-----VG-------RPEIAILDELTTGLDPQGRR 166
                 333455566677889999*******5.55666662.....22.......24555555555555555555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.51
     SbcCD_C  60 repalrlvfLDEAFsklDeesia 82 
                    +++   LD+AF +l ++ ++
  KIR65906.1 279 AGLRVEQPTLDDAFVSLTGRAAR 301
                 455677778*****999887766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00015      0.17       9     133 ..      33     150 ..      26     187 .. 0.76
   2 ?   -2.8   0.0       6.3   7.1e+03      52      70 ..     259     277 ..     254     296 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdllrellralglelkaerlsseellealeqalraravielliiDEaqh.lr. 104
                  v G+ G+GKTt+++ ++           ++ ++v+v    +  +++++++++  +l++++    l+ +e l++ +   r+ra+     iDE    l  
  KIR65906.1  33 GVLGPNGAGKTTTVECVQGLRR-------ADGGTVRVLGLDPVrDRTEVRQRVGAQLQESQLPDKLRVREALDLYRSFYRNRAD-----IDELLDdLGl 119
                 588**************99874.......3778887777776679999999999999998888677777777777777777777.....6765333544 PP

      AAA_22 105 ...seealeeLrsllnlsrkgvqliLvGtpel 133
                    +++a+ +L+  ++ +r +v+l LvG pe+
  KIR65906.1 120 taqRDTAFHKLSGGQK-QRLSVALALVGRPEI 150
                 3333666666655555.677777777777776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.3
      AAA_22  52 sskdllrellralglelka 70 
                 +++++l+ +l+al +++ +
  KIR65906.1 259 GPEQVLQTVLSALAEQKVR 277
                 5677788888888777665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.049        55      44      62 ..      26      44 ..       6      60 .. 0.81
   2 ?    4.9   0.0     0.017        19      95     145 ..     134     183 ..     124     200 .. 0.83
   3 ?    0.2   0.0      0.48   5.3e+02      29      90 ..     233     295 ..     217     304 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.049
   IstB_IS21 44 iekkenivllGpsGvGKsh 62
                +e+ e + +lGp G+GK+ 
  KIR65906.1 26 VEQGEIFGVLGPNGAGKTT 44
                57778889*********95 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.017
   IstB_IS21  95 rdgklaralkrllkvdllilDdlgllpldqaeaellfeviekryerrsiii 145
                 ++++l+ al+ + ++++ ilD+l +  ld + +++ ++++e+  +r  +++
  KIR65906.1 134 QKQRLSVALALVGRPEIAILDELTT-GLDPQGRRDTWDLVERIRDRGVTVV 183
                 467888999999**********975.7999999999999999988887776 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.48
   IstB_IS21  29 sldkrkvkeLatlsfiek.kenivllGpsGvGKshlaialgveavr.aglsvlfvrvedLveel 90 
                  +d + +++L +   +++  + + ++Gp  v  + l+ al+ + vr agl+v   +++d + +l
  KIR65906.1 233 PVDDALLAALPEVTGVRRsGDEVTVTGPEQVLQTVLS-ALAEQKVRyAGLRVEQPTLDDAFVSL 295
                 5666666666555555541578899999999999885.89999999899999988888877666 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00029      0.33      14      43 ..      21      50 ..      17      55 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00029
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTllDAiq 43
                + ++++++ +++ + Gp+G+GK+T +  +q
  KIR65906.1 21 DVSFTVEQGEIFGVLGPNGAGKTTTVECVQ 50
                56677775559999**********987665 PP

>> Lantibiotic_a  Lantibiotic alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00025      0.29      10      24 ..      34      48 ..      30      50 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00025
  Lantibiotic_a 10 rLGNkGylCTvTkEC 24
                   +LG +G++ T T+EC
     KIR65906.1 34 VLGPNGAGKTTTVEC 48
                   8************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2248.79
//
Query:       KIR65907.1  [L=245]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-25   88.8   8.9    4.8e-25   88.2   8.9    1.2  1  ABC2_membrane    ABC-2 type transporter
    5.7e-16   58.6   6.5    5.7e-16   58.6   6.5    1.7  2  ABC2_membrane_3  ABC-2 family transporter protein
    0.00014   21.3  15.8    0.00036   19.9  15.8    1.7  1  ABC2_membrane_2  ABC-2 family transporter protein
  ------ inclusion threshold ------
       0.01   15.8   4.7      0.018   15.0   4.7    1.4  1  ABC2_membrane_4  ABC-2 family transporter protein
      0.054   12.9   3.0      0.082   12.3   3.0    1.3  1  DUF373           Domain of unknown function (DUF373)
       0.48    8.6   8.8       0.69    8.1   8.8    1.4  1  DUF2070          Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   8.9   1.6e-28   4.8e-25       6     205 ..       7     210 ..       3     213 .. 0.89

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 1.6e-28
  ABC2_membrane   6 llkreflqrwrdpslgllwrliqplllalvfgtvfgnlg....nsedglnr.pgllffsvlflafsaltsvapvferergvlerelvsplyslsay 96 
                    l+  e ++++r p+++ ++ ++ pl l+lvfg+   ++      + ++l++ p l   +++ +  +++  +a+ + rer+vl r+ ++p+  ++  
     KIR65907.1   7 LIAVEAKLFLREPVSL-FFVFALPLGLMLVFGLPQRGASgadaGQHGELTFlPALALALTIGMLALFTLPMALGIYRERRVLRRLATTPV-NPALL 100
                    56678899*****888.99*****************966554446666633766666666666669999999******************.***** PP

  ABC2_membrane  97 vlakvlvelpvsllqalifllivyflvgldls.rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwlqw 191
                    ++a+v+v+l+++++ a++  + v fl++ +   ++  f+l++ll + ++ ++glli+alaps++ a+ +++++++pll+l+G+  p+d+mp +l  
     KIR65907.1 101 LVAQVVVNLVMGVAGAVVTAIGVRFLLDQPAPaNVPAFVLAFLLGVACLFAVGLLIAALAPSARAAQSIGPALFFPLLFLAGAWLPRDQMPTVLAR 196
                    **************************9999988789999999999**********************************************99999 PP

  ABC2_membrane 192 iaylnPltyaveal 205
                    i  ++Pl  +v+ l
     KIR65907.1 197 IGDYSPLGATVDTL 210
                    ******98888776 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2      0.13   3.9e+02       3      24 ..      21      42 ..      19      52 .. 0.74
   2 !   58.6   6.5   1.9e-19   5.7e-16     166     343 ..      60     238 ..      53     240 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.13
  ABC2_membrane_3  3 fliitlllPiilvlllglifsn 24
                     +l++++ lP+ l+l++gl    
       KIR65907.1 21 SLFFVFALPLGLMLVFGLPQRG 42
                     6788888999999888887654 PP

  == domain 2  score: 58.6 bits;  conditional E-value: 1.9e-19
  ABC2_membrane_3 166 liliilifitasf.iavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllill...lafglgipfg.nlglllllfllfglayia 254
                      l+l++ i + a+f + +++   +e+r++ ++ +++v+p+ ++++ ++  +++++  ++++ +   ++++   p   n+ +++l fll+  ++ a
       KIR65907.1  60 LALALTIGMLALFtLPMALGIYRERRVLRRLATTPVNPALLLVAQVVVNLVMGVAGAVVTAIgvrFLLD--QPAPaNVPAFVLAFLLGVACLFA 151
                      444444433333314556778899**********************************99887677999..66667999999************ PP

  ABC2_membrane_3 255 lgyllsslfknsetaqilifivilllsgffgglfp.ledlpsalkwifsiiPffapglgllrlitgdplweillsliilalfavvyllla 343
                      +g+l+ +l  ++++aq++ +++++ +++f++g ++  +++p+ l+ i+ + P+ a  + l     gd  ++ ++ l++la++avv  +la
       KIR65907.1 152 VGLLIAALAPSARAAQSIGPALFF-PLLFLAGAWLpRDQMPTVLARIGDYSPLGATVDTLAAAWAGD--SPAWPQLLALAVTAVVGSVLA 238
                      ************************.66666666554999****************************..99**************98887 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9  15.8   1.2e-07   0.00036      12     283 ..      16     242 ..       6     245 .] 0.71

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.2e-07
  ABC2_membrane_2  12 vrsrrfllltvllplidvalaylkdlgsslqseakaikeatlaleyveaasasdeaedtdqdlkvvstimavlipviaalfgadaiagEkergT 105
                      +r ++ l +++ lpl+ ++l + + + + ++++a++ +e+t                          +++a+ i+++a+ +   a+   +er+ 
       KIR65907.1  16 LREPVSLFFVFALPLG-LMLVFGLPQRGASGADAGQHGELTFLP----------------------ALALALTIGMLALFTLPMALGIYRERRV 86 
                      5555555555555555.555555555555555555555554442......................13556666666666666666667999** PP

  ABC2_membrane_2 106 lkllLskPvsRdeillgKfigglaiglaiavallatvllalaiilalgivlaledllllvvasvlllllvvflalglllSsvarssreaaalal 199
                      l++l ++Pv  + +l++ ++ +l++g+a+av + ++v +       l +++a +++  +v+a++l ++  +++a+gll++++a s+r a  +  
       KIR65907.1  87 LRRLATTPVNPALLLVAQVVVNLVMGVAGAVVTAIGVRF-------LLDQPAPANVPAFVLAFLLGVA--CLFAVGLLIAALAPSARAAQSIGP 171
                      *************************99988888888444.......8899999999999999999899..99************9999999999 PP

  ABC2_membrane_2 200 glfvvlailvpivlygvaellagpavpqeindflsllsptsayntllneilagsdlnalgstatnllilllllavllvlgyvlF 283
                      +lf+ l++l +  l +     ++p+v   +  + ++ + ++  +tl ++    s      +++  ll+l + ++v  vl++ +F
       KIR65907.1 172 ALFFPLLFLAGAWL-P---RDQMPTV---LARIGDYSPLGATVDTLAAAWAGDS------PAWPQLLALAVTAVVGSVLATRFF 242
                      99999966666555.3...2333333...5556666666666666666666666......788888888888888888888777 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   4.7   5.9e-06     0.018       8     162 ..      13     163 ..       7     182 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.9e-06
  ABC2_membrane_4   8 Klkrskivwllvlaallvpllallyfnllgktgldpaefysls...vfgftlllllplilgiiasylifrEeqndtlknLltiPvsrtklllaK 98 
                      Kl  +  v l+++ al + l++++   + g++g+d+ ++  l+   ++ + l++ + +++++  +  i+rE+    l+ L t Pv+ + ll+a 
       KIR65907.1  13 KLFLREPVSLFFVFALPLGLMLVFGLPQRGASGADAGQHGELTflpALALALTIGMLALFTLPMALGIYRERR--VLRRLATTPVNPALLLVAQ 104
                      5555555666666666555666677677888999999999976444777777788888888888999999986..8****************** PP

  ABC2_membrane_4  99 livllllsvllmlvtflitvlfallsgfvgfsvklvlellkkclelgllvffavlpiialvllk 162
                      ++v l++ v+  +vt++  v f  l+  ++   + v  ++  +l+ ++++f++ l i al+   
       KIR65907.1 105 VVVNLVMGVAGAVVTAI-GVRF--LLDQPAP--ANVPAFVLAFLLGVACLFAVGLLIAALAPSA 163
                      ****9999988877553.3333..4444322..2344455555555555555555566676543 PP

>> DUF373  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.0   2.7e-05     0.082     148     279 ..      16     160 ..       6     184 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.7e-05
      DUF373 148 lkdpelrktiLvplGlllliyallll.............lglpelalaiillllGlylllrGfgldelleelleklkesleegritfvtyv.valllll 232
                 l++p    +++ ++  l+l+++l                + lp+lala+ +++l l+ l  ++g+++  +++l++l +   +  + +v+ v v l++ +
  KIR65907.1  16 LREPVSLFFVFALPLGLMLVFGLPQRgasgadagqhgelTFLPALALALTIGMLALFTLPMALGIYR-ERRVLRRLATTPVNPALLLVAQVvVNLVMGV 113
                 55555555555555555666666666677777777777766899**********************9.5567777777777777666665525566677 PP

      DUF373 233 igiisgyislesvssasvssglltlilafiygavewlalailtaslg 279
                  g++ + i +  + ++++ +++   +laf+ g+  ++a+++l+a+l+
  KIR65907.1 114 AGAVVTAIGVRFLLDQPAPANVPAFVLAFLLGVACLFAVGLLIAALA 160
                 77777777777777799***********************9999876 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   8.8   0.00023      0.69      38     149 ..      66     216 ..      13     244 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00023
     DUF2070  38 lfgillfglpalvaflltlpvlrilggrltykrslflalltelivviisllaillsall.............qalvllalvlslalvfalrllvlvavs 123
                 +  + lf+lp+ + +    +vlr l    t+  +  l l+++++v +++ +a ++++ +                ++la++l++a  fa+ ll+  +  
  KIR65907.1  66 IGMLALFTLPMALGIYRERRVLRRL---ATTPVNPALLLVAQVVVNLVMGVAGAVVTAIgvrflldqpapanVPAFVLAFLLGVACLFAVGLLIAALAP 161
                 2223344445444444444444444...6677777888888888888777777766666778899999988877778899999**************** PP

     DUF2070 124 desllkavlpaliqpllailllvly.............................f 149
                 +++  +++ pal  pll+++ + l                               
  KIR65907.1 162 SARAAQSIGPALFFPLLFLAGAWLPrdqmptvlarigdysplgatvdtlaaawaG 216
                 *****************99988888666666666666665555555555555542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 1746.64
//
Query:       KIR65908.1  [L=762]
Description: helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-44  151.7   0.3    1.9e-44  151.7   0.3    1.9  2  AAA_30           AAA domain
    1.2e-37  127.8   0.0    2.6e-32  110.6   0.0    2.4  2  HHH_4            Helix-hairpin-helix containing domain
    1.5e-33  116.2   0.1      4e-33  114.8   0.1    1.8  1  AAA_19           AAA domain
    7.4e-20   70.5   0.0    1.3e-19   69.7   0.0    1.4  1  SH3_13           ATP-dependent RecD-like DNA helicase SH3 dom
    1.6e-19   69.4   1.0    4.8e-19   67.9   1.0    1.9  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    6.2e-10   39.2   0.0    0.00081   19.2   0.0    2.5  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    1.3e-06   29.0   5.4    7.7e-06   26.4   0.2    3.5  3  HHH_5            Helix-hairpin-helix domain
    3.6e-06   27.0   1.4     0.0022   17.9   0.1    2.2  2  AAA_11           AAA domain
    1.7e-05   24.7   3.5    0.00051   19.9   3.5    2.4  1  Helicase_RecD    Helicase
     0.0025   17.0   0.8      0.013   14.7   0.0    2.2  2  PIF1             PIF1-like helicase
     0.0076   15.7   0.1      0.014   14.8   0.1    1.4  1  UvrD_C           UvrD-like helicase C-terminal domain
  ------ inclusion threshold ------
      0.018   15.3   0.0      0.042   14.1   0.0    1.6  1  AAA_22           AAA domain
      0.021   14.2   0.6      0.056   12.9   0.1    1.9  2  PhoH             PhoH-like protein
      0.045   13.8   0.0       0.08   13.0   0.0    1.4  1  DUF87            Helicase HerA, central domain
      0.052   13.9   0.3         25    5.5   0.0    3.3  3  IMS_HHH          IMS family HHH motif
      0.069   13.1   0.9        0.6   10.1   0.3    2.9  2  HHH              Helix-hairpin-helix motif
       0.11   12.3   0.1         22    5.0   0.0    2.9  2  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
       0.11   12.8   0.2       0.37   11.2   0.2    2.0  1  AAA_16           AAA ATPase domain
       0.17   11.8   0.2       0.56   10.1   0.1    2.0  2  NACHT            NACHT domain
       0.18   10.7   0.0       0.28   10.0   0.0    1.2  1  AAA_10           AAA-like domain
       0.18   12.3   0.0       0.67   10.5   0.0    1.9  1  ABC_tran         ABC transporter


Domain annotation for each model (and alignments):
>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.7   0.3   2.2e-47   1.9e-44       2     175 ..     363     540 ..     362     547 .. 0.94
   2 ?   -3.7   0.1       9.5   8.1e+03      13      30 ..     730     747 ..     717     749 .. 0.75

  Alignments for each domain:
  == domain 1  score: 151.7 bits;  conditional E-value: 2.2e-47
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk......grarlepgtlliv 94 
                 l++eQ++av+ +lts+  vavltG++G GK+++++++ e+++a++ +++++Aptg+aAk+L+e +g +a t+++ll+         +r +  +++l++v
  KIR65908.1 363 LAPEQEQAVRLALTSK--VAVLTGGPGCGKSFTVRSIIELAAAKKAKIVLAAPTGRAAKRLTELTGHPATTVHRLLQLRPggdatfDRDNPVDADLMVV 459
                 899*************..9*********************************************************5555***99966677788***** PP

      AAA_30  95 DEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlveaagigtaeLtevvRqke.seeraaalalregdae 175
                 DEa+m+d   +++l+ka+   ga+++lvGD +Ql+sV+aG+vlrd+++a++ + ++Lt ++Rq++ s     a++++ g+a+
  KIR65908.1 460 DEASMLDLILANKLVKAVPP-GAHLLLVGDVDQLPSVGAGEVLRDVLAAETVPRVRLTRIFRQAQeSGVVVNAHRINAGQAP 540
                 ********************.******************************************7768999999999999876 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 9.5
      AAA_30  13 lltsgdrvavltGpAGtG 30 
                 l++s++ +a+++  AGtG
  KIR65908.1 730 LAGSRKALAIAVRTAGTG 747
                 567777788888888888 PP

>> HHH_4  Helix-hairpin-helix containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.8e-05     0.024      16      58 ..     122     163 ..     119     168 .. 0.89
   2 !  110.6   0.0   3.1e-35   2.6e-32       1      92 []     170     260 ..     170     260 .. 0.98

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.8e-05
       HHH_4  16 gisaklaekiykkygeealeilkenPYrliedvegigFktaDk 58 
                 gi++k+a +i+  +g ++l+i++e+P rl+e v g+g k+  +
  KIR65908.1 122 GIGPKMAARIVAAFGVDTLRIIEEEPGRLVE-VHGLGRKRTAA 163
                 89***************************97.99998777655 PP

  == domain 2  score: 110.6 bits;  conditional E-value: 3.1e-35
       HHH_4   1 eqeelreimeflqeygisaklaekiykkygeealeilkenPYrliedvegigFktaDkiakklgieedsprRikagilyvlkeaaneeGhty 92 
                 eq++++e+m flq +g+s+++a++i+k+yg+e++++++++PYrl++dv+gigF+taD+iak +gi++dsp+R++agi y+l+eaa + Gh+y
  KIR65908.1 170 EQKAIKEVMVFLQGVGVSTSHAVRIFKQYGDESIAVVRDDPYRLAADVWGIGFRTADSIAKAVGIPHDSPQRVRAGIRYTLSEAA-DGGHCY 260
                 6899*********************************************************************************.7****8 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   0.1   4.6e-36     4e-33       1     145 [.     367     496 ..     367     497 .. 0.94

  Alignments for each domain:
  == domain 1  score: 114.8 bits;  conditional E-value: 4.6e-36
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelleeaeeek 98 
                 q++av+ al++kv ++t+GpG+GK+ +++ i++l+ + +    ++i+l+a+tgrAak+l+e +   g++atT+Hrl  l++ +     +++    ++++
  KIR65908.1 367 QEQAVRlALTSKVAVLTGGPGCGKSFTVRSIIELAAAKK----AKIVLAAPTGRAAKRLTELT---GHPATTVHRL--LQLRPGG--DATF----DRDN 450
                 89***99***************************99999....89******************...**********..9999999..4445....6899 PP

      AAA_19  99 klqeeellivDEfqdvd.elqyrLlkallgekkklllvGDpdQliyvf 145
                 ++ +++l++vDE++++d  l+++L+ka++ ++++lllvGD dQl++v+
  KIR65908.1 451 PV-DADLMVVDEASMLDlILANKLVKAVP-PGAHLLLVGDVDQLPSVG 496
                 **.999***********************.7766************98 PP

>> SH3_13  ATP-dependent RecD-like DNA helicase SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   1.5e-22   1.3e-19       1      64 [.     598     664 ..     598     664 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 1.5e-22
      SH3_13   1 LNkelqealnpkskkkkevkvggrvfrvgDkVmqlkNnydk...gvfNGDiGiikeidkeekkltVd 64 
                 LN+ lq+a+ p++++ +e ++ggrvfrvgDkV+q++Nnydk   gvfNG +G+++++d++e++ltV+
  KIR65908.1 598 LNTLLQQAIAPHRENAPERRHGGRVFRVGDKVIQVRNNYDKgaaGVFNGTVGVVTALDPDEQTLTVR 664
                 9****************************************************************95 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   1.0   5.7e-22   4.8e-19       1      51 [.     683     730 ..     683     731 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 5.7e-22
    UvrD_C_2   1 hayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRAreklil 51 
                 haya+t+h++QGse+paV++  p+++ a+  +l+r+lLYtavTRAr+ ++l
  KIR65908.1 683 HAYAITVHRSQGSEYPAVVM--PVTMGAY-TMLQRNLLYTAVTRARKLVVL 730
                 89******************..**99999.789****************98 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   9.4e-07   0.00081       2     112 ..     381     503 ..     380     534 .. 0.71
   2 !   17.5   0.0   3.1e-06    0.0027     177     231 ..     678     729 ..     642     732 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 9.4e-07
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts....liltvnrptaelltegk.............pklpnlsvrtvdsflmalvkstkgkililDEylllhaGy 78 
                      v  G pGcGKS  +r++++       +++   pt  ++   k             ++l +l+  +  +f   +  +  ++++++DE+ +l+  +
       KIR65908.1 381 VLTGGPGCGKSFTVRSIIELAaakkAKIVLAAPTGRAA---KrlteltghpattvHRLLQLRPGGDATFDRDNPVD--ADLMVVDEASMLDLIL 469
                      6789**************99776553333333323332...14446677888877777777777777777776654..*************655 PP

  Viral_helicase1  79 ill.laalskaklvilfGDplQipfhsrnasflla 112
                       +  + a +    ++l+GD  Q p+   ++++l+ 
       KIR65908.1 470 ANKlVKAVPPGAHLLLVGDVDQLPSVG-AGEVLRD 503
                      5555666677778999******99874.5555555 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 3.1e-06
  Viral_helicase1 177 kealgvrevttvhevqGltfdkVtlvllketdlelisesrenllvAlTRhrkslv 231
                      + +l++  + tvh  qG++++ V+  ++       +  +r+ l++A TR+rk +v
       KIR65908.1 678 LDELQHAYAITVHRSQGSEYPAVVMPVTMGAY-T-M-LQRNLLYTAVTRARKLVV 729
                      4455555689***************9995543.2.2.369***********9887 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.2     9e-09   7.7e-06       7      51 ..     120     164 ..     113     170 .. 0.88
   2 ?    2.9   0.0       0.2   1.7e+02       9      52 ..     185     229 ..     180     239 .. 0.72
   3 ?   -1.4   0.0       4.5   3.8e+03      32      51 ..     412     435 ..     390     437 .. 0.60

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 9e-09
                 STT--HHHHHHHHTT.T--SHHHHHHS-HHHHHTSTTS-HHHHHHH CS
       HHH_5   7 vsGiGpktAlallsa.GiesvedlaaadveeLakipGiGkktAeri 51 
                 ++GiGpk+A +++ a G++++  ++++++ +L +++G+G k+   i
  KIR65908.1 120 IKGIGPKMAARIVAAfGVDTL-RIIEEEPGRLVEVHGLGRKRTAAI 164
                 89*************999999.678889*************86665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.2
                 T--HHHHHHHHTTT--.SHHHHHHS-HHHHHT.STTS-HHHHHHHH CS
       HHH_5   9 GiGpktAlallsaGie.svedlaaadveeLak.ipGiGkktAerii 52 
                 G+  + A+++ ++ ++    ++++ d+ +La+ + GiG +tA++i 
  KIR65908.1 185 GVSTSHAVRIFKQ-YGdESIAVVRDDPYRLAAdVWGIGFRTADSIA 229
                 4444567778888.44223367777888888889999999999985 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 4.5
                 S....-HHHHHTSTTS-HHHHHHH CS
       HHH_5  32 a....dveeLakipGiGkktAeri 51 
                 a    ++++L++++G  + t+ r+
  KIR65908.1 412 AptgrAAKRLTELTGHPATTVHRL 435
                 144446788888888777777776 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   2.5e-06    0.0022       4      71 ..     365     422 ..     362     436 .. 0.87
   2 !    8.0   0.2    0.0026       2.2     218     257 ..     454     495 ..     443     497 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.5e-06
      AAA_11   4 dsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDell 71 
                  +q++a++ al+++  +++ G PG+gK++t+ ++++ +         +++k++i ++ap+  A   l+
  KIR65908.1 365 PEQEQAVRLALTSKV-AVLTGGPGCGKSFTVRSIIELA---------AAKKAKIVLAAPTGRAAKRLT 422
                 68**********996.9******************999.........789999999999888766655 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0026
      AAA_11 218 fdvviIDEAaqavEpstliPlrlga...kkvvLvGDpkQLpat 257
                  d++++DEA++ + +     l +++   ++++LvGD  QLp++
  KIR65908.1 454 ADLMVVDEASM-LDLILANKLVKAVppgAHLLLVGDVDQLPSV 495
                 68899999998.44444444555555669************86 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   3.5     6e-07   0.00051       1     113 [.     381     476 ..     381     482 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 6e-07
  Helicase_RecD   1 vltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglkeeekkkkaekaelrvr.kqrieyiapdellklkeqadllv 95 
                    vlt+++G GKS ++  +++ ++a+ k++i+++ap+ +++k+l+e   +  ++++              l+ r +   ++ + + + +     dl+v
     KIR65908.1 381 VLTGGPGCGKSFTVRSIIELAAAK-KAKIVLAAPTGRAAKRLTELTGHPATTVH------------RLLQLRpGGDATFDRDNPVDA-----DLMV 458
                    79************9888877777.66******************965554332............223333377777766666554.....9*** PP

  Helicase_RecD  96 vDEAAaiplpllkkllek 113
                    vDEA++++l l +kl+++
     KIR65908.1 459 VDEASMLDLILANKLVKA 476
                    *********999999875 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.5e-05     0.013       8     122 ..     369     473 ..     362     498 .. 0.76
   2 ?   -0.1   0.1      0.47     4e+02     335     364 .]     623     654 ..     619     654 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-05
                 HHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEESSHHHHHCC.TSEECHHHHT-TTSSS-HHHHHHHTS...CCCHHHHHC- CS
        PIF1   8 kvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrsegkivlavAssGvAalllegGrtahsrfkiplekdeestckikrg...sklaellkkt 103
                 ++++ +        +k+  +tG  G gK+f  + +++   +++ +++  A +G Aa  l    t h    +         +++++g   +  ++   ++
  KIR65908.1 369 QAVRLA------LTSKVAVLTGGPGCGKSFTVRSIIELAAAKKAKIVLAAPTGRAAKRL-TELTGHPATTVHR------LLQLRPGgdaTFDRDNPVDA 454
                 555444......56788889***********************9999************.6677777666543......22333330003345666789 PP

                 SEEEEECGGGSBHHHHHHH CS
        PIF1 104 sliiwDEapmverecfeal 122
                 +l+++DEa+m++  + ++l
  KIR65908.1 455 DLMVVDEASMLDLILANKL 473
                 9999999999987666655 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.47
                 E-TT-EEEE-S--.CT.T-SC-TCEEEEEEEE CS
        PIF1 335 LkvGvpvmllrNl.dq.saGLcNGtrlivtql 364
                  +vG +v+ +rN  d+ +aG  NGt ++vt l
  KIR65908.1 623 FRVGDKVIQVRNNyDKgAAGVFNGTVGVVTAL 654
                 58999*****985244358**********976 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.7e-05     0.014     285     346 ..     682     732 ..     672     735 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.7e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 285 ekipiiTiHqAKGlEFdvVflagleegtfPsyrskkekrleEEkRlfYVaiTRAkkrLfisy 346
                 +  + iT+H++ G+E++ V++      t+  y+          ++l+Y a+TRA+k ++++ 
  KIR65908.1 682 QHAYAITVHRSQGSEYPAVVMPV----TMGAYTML-------QRNLLYTAVTRARKLVVLAG 732
                 556679*************9998....55545433.......479***********998875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     5e-05     0.042       6     103 ..     378     465 ..     374     488 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav......ielliiD 98 
                 ++ v+tG +G+GK++++r + e +          ++ +++ l+++t     +++l + +g+++ +  +++ +l+       +a+++        l+++D
  KIR65908.1 378 KVAVLTGGPGCGKSFTVRSIIELA---------AAKKAKIVLAAPT--GRAAKRLTELTGHPATT-VHRLLQLR----PGGDATFDrdnpvdADLMVVD 460
                 6899*******************9.........6777777777777..33456677777755555.33333333....333333333334777788888 PP

      AAA_22  99 Eaqhl 103
                 Ea  l
  KIR65908.1 461 EASML 465
                 87766 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   6.5e-05     0.056       7      76 ..     365     432 ..     361     439 .. 0.85
   2 ?   -2.1   0.0       2.6   2.2e+03      18      38 ..     734     754 ..     720     757 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.5e-05
                 HHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------- CS
        PhoH   7 keQkeylealkkndivfaiGpaGtGKtylavalavealkkkkvkriiltrpaveageelGflpgdleekv 76 
                  eQ+++++   ++++ + +G  G+GK++   +  +  l + k  +i+l+ p+  a ++l+ l g  ++ v
  KIR65908.1 365 PEQEQAVRLALTSKVAVLTGGPGCGKSFT--VRSIIELAAAKKAKIVLAAPTGRAAKRLTELTGHPATTV 432
                 69******999****************95..55666777777889***************9999766655 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.6
                 H-SEEEEE--TTSSTTHHHHH CS
        PhoH  18 kndivfaiGpaGtGKtylava 38 
                 ++ + +a+  aGtG+ + a++
  KIR65908.1 734 RKALAIAVRTAGTGRRHTALT 754
                 6778999999****9888875 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.4e-05      0.08      22      57 ..     375     410 ..     362     415 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.4e-05
       DUF87  22 vtrHlAil.gsTGsGKSntvavLleellekkgatili 57 
                 +t  +A+l g  G GKS+tv++++e ++  k+a+i++
  KIR65908.1 375 LTSKVAVLtGGPGCGKSFTVRSIIELAA-AKKAKIVL 410
                 477888886889*************999.99999986 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.029        25      16      32 .]     120     137 ..     120     137 .. 0.83
   2 ?    0.1   0.0       1.5   1.3e+03      15      24 ..     152     161 ..     149     164 .. 0.81
   3 ?    3.8   0.0     0.097        83      15      32 .]     216     234 ..     215     234 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.029
     IMS_HHH  16 ipGiGgklgek.LeklGi 32 
                 i GiG+k++++  +++G+
  KIR65908.1 120 IKGIGPKMAARiVAAFGV 137
                 68*********7776775 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.5
     IMS_HHH  15 kipGiGgklg 24 
                 +++G+G+k  
  KIR65908.1 152 EVHGLGRKRT 161
                 89*****975 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.097
     IMS_HHH  15 kipGiGgklgek.LeklGi 32 
                 +++GiG ++++   ++ Gi
  KIR65908.1 216 DVWGIGFRTADSiAKAVGI 234
                 89*******9996666665 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00071       0.6      16      29 ..     120     133 ..     119     134 .. 0.89
   2 ?   -1.3   0.0       2.9   2.4e+03      13      24 ..     150     161 ..     150     164 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00071
                 STT-SHHHHHHHHH CS
         HHH  16 lPGVGpktAeaIls 29 
                 ++G+Gpk+A +I +
  KIR65908.1 120 IKGIGPKMAARIVA 133
                 79*********976 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.9
                 HHTSTT-SHHHH CS
         HHH  13 LlalPGVGpktA 24 
                 L+++ G G+k+ 
  KIR65908.1 150 LVEVHGLGRKRT 161
                 7899*****985 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.026        22       6      30 ..     120     145 ..     119     160 .. 0.84
   2 ?    4.1   0.1      0.05        42       5      18 ..     216     229 ..     213     235 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.026
  DNA_pol_lambd_f   6 vyGVGpktAkkwyak.Girtledlra 30 
                      + G+Gpk A + +a+ G+ tl  + +
       KIR65908.1 120 IKGIGPKMAARIVAAfGVDTLRIIEE 145
                      66******************988777 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.05
  DNA_pol_lambd_f   5 kvyGVGpktAkkwy 18 
                       v+G+G +tA    
       KIR65908.1 216 DVWGIGFRTADSIA 229
                      69********8765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00043      0.37      25      53 ..     378     406 ..     361     506 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00043
      AAA_16  25 elvllsGesGvGKsslvrellralekdgg 53 
                  + +l+G +G+GKs  vr++ + + ++++
  KIR65908.1 378 KVAVLTGGPGCGKSFTVRSIIELAAAKKA 406
                 5789****************986665543 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00066      0.56       2      29 ..     379     406 ..     378     436 .. 0.88
   2 ?   -2.6   0.0       5.1   4.4e+03     110     126 ..     470     486 ..     445     523 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00066
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-S CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegkl 29 
                 + +l+G +G+GK+  ++++++++a++k 
  KIR65908.1 379 VAVLTGGPGCGKSFTVRSIIELAAAKKA 406
                 5689*****************9999874 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.1
                 HHHHCTTTTT--EEEEE CS
       NACHT 110 selirkkllpeaslllt 126
                 ++ + k+++p+a+lll 
  KIR65908.1 470 ANKLVKAVPPGAHLLLV 486
                 44455555555555543 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00033      0.28      21      60 ..     377     416 ..     363     443 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00033
      AAA_10  21 asasliiGdlGnGKSvlakllvlyisllggkaliiDpkke 60 
                 +  ++++G++G GKS++++ ++  +++ + k+++  p+  
  KIR65908.1 377 SKVAVLTGGPGCGKSFTVRSIIELAAAKKAKIVLAAPTGR 416
                 444789***************************9988876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00078      0.67      11      44 ..     377     410 ..     370     442 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00078
                 TSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  11 gekvaivGenGaGKStLlkllagllkpteGeill 44 
                 +++ +++G  G+GKS  ++ +++l   ++ +i l
  KIR65908.1 377 SKVAVLTGGPGCGKSFTVRSIIELAAAKKAKIVL 410
                 567899******************9999988854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.52
# Mc/sec: 4447.10
//
Query:       KIR65909.1  [L=170]
Description: chorismate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-18   67.7   0.9    4.5e-18   66.1   0.9    1.6  1  DUF664    Protein of unknown function (DUF664)
    2.5e-16   60.4   2.3    3.1e-16   60.0   2.3    1.1  1  DinB_2    DinB superfamily
  ------ inclusion threshold ------
      0.025   14.5   0.0      0.071   13.0   0.0    1.6  1  DinB      DinB family


Domain annotation for each model (and alignments):
>> DUF664  Protein of unknown function (DUF664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.9   7.5e-22   4.5e-18      12     147 ..      17     165 ..       6     167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 7.5e-22
                 HHHHHHTT--GGGTT--BTTB-S-HHHHHHHHHHHHHHHHHHHTT-S---.TTTSHH.............TTTSSS---SS---HHHHHHHHHHHHHHH CS
      DUF664  12 tllakleGLsdeqarrravpsstsllgLvkHvaevErgwfrrvlggeeev.pldrsa.............adpdadfelaedetladllaeyrravara 96 
                  ++a+++GLs+eq+rr++ p ++ +++Lv H+++v+ + + + l+  +   + d++a             a   +++++   e++  l++ ++++++r+
  KIR65909.1  17 LVRAAVDGLSPEQLRRAPAPGANPVGWLVWHLTRVQDHHVADLLDTGQLWaTGDWAArfglsadpddtgyAHTPDQVAAVAPESPRVLVDYHDAVAERT 115
                 5899*********************************999999876644303344446888877777877777777888888999999999999999** PP

                 HHHHTT--HHHHTSB-T-......SBHHHHHHHHHHHHHHHHHHHHHHHHH CS
      DUF664  97 davvaaeldldetvrvpkapwgeevslrwvlvhlieetarHaGhadilRel 147
                 +  +a+  ++d  + v ++ w ++v+l  +lv++ e+  +H G+a+++R+l
  KIR65909.1 116 RGFLAGLRPADLDRVV-DEAWDPPVTLGVRLVSIAEDDLQHVGQAAYVRGL 165
                 *****77777776665.899*****************************87 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   2.3   5.2e-20   3.1e-16       7     128 .]      16     159 ..      10     159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 5.2e-20
      DinB_2   7 arllalledlteeelnrqpspgkwsiawllaHlgnveelllerlr........................geeaprpgldpltppsaaealaylaevrar 81 
                 a ++a++++l++e+l+r p+pg ++++wl++Hl+ v++  ++ l+                        g ++ +++   ++p s++ +++y ++v +r
  KIR65909.1  16 ALVRAAVDGLSPEQLRRAPAPGANPVGWLVWHLTRVQDHHVADLLdtgqlwatgdwaarfglsadpddtGYAHTPDQVAAVAPESPRVLVDYHDAVAER 114
                 67899*********************************7777777587676665554444333322222223335555666669*************** PP

      DinB_2  82 llallealtdadldrpltaphpglgkltlgdvllfvlqHeqhHleqi 128
                 ++ +l++l +adldr +  +    +++tlg  l  +++   +H +q+
  KIR65909.1 115 TRGFLAGLRPADLDRVVDEA--WDPPVTLGVRLVSIAEDDLQHVGQA 159
                 ********************..999*************999999995 PP

>> DinB  DinB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.2e-05     0.071      23     141 ..      20     160 ..      16     165 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
                 HHHCT--CCCTT--SSTTS--HHHHHHHHHHHHHHHHHHHHH.......................SSSGGGT----...-----HHHHHHHHHHHHHHH CS
        DinB  23 daiaaLpdeelkaengegfqsvkqtlnHvldveelwlsrleg.....................eegapavddqter...keleeldalrealderliaf 97 
                  a+  L++e+l +  + g   v+ +++H++ v+ + ++ l                       + g++   dq+ +   ++   l +++ a+ er++ f
  KIR65909.1  20 AAVDGLSPEQLRRAPAPGANPVGWLVWHLTRVQDHHVADLLDtgqlwatgdwaarfglsadpdDTGYAHTPDQVAAvapESPRVLVDYHDAVAERTRGF 118
                 5788899*****9999999*************999988887789*******************77777777777661114555677899********** PP

                 HCT--HHHHHSEE------SS-EEHHHHHHHHHHHHHHHHHHHH CS
        DinB  98 ldqltdleretlldradagtvkmtlaelLaHvinHethHrGqit 141
                 l++l     +   + ++a++ ++tl+  L  + +++  H Gq++
  KIR65909.1 119 LAGLRP--ADLDRVVDEAWDPPVTLGVRLVSIAEDDLQHVGQAA 160
                 ***999..788889999*************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 1146.82
//
Query:       KIR65910.1  [L=349]
Description: alcohol dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.9e-27   93.0   0.3    2.6e-26   91.6   0.3    1.7  2  ADH_N         Alcohol dehydrogenase GroES-like domain
    3.6e-21   75.5   0.4    8.1e-21   74.4   0.2    1.7  2  ADH_zinc_N    Zinc-binding dehydrogenase
    5.4e-10   40.4   0.1    1.4e-09   39.1   0.0    1.7  2  ADH_zinc_N_2  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.087   12.6   0.0       0.14   11.9   0.0    1.2  1  Met_10        Met-10+ like-protein
       0.15   11.6   0.1        1.1    8.8   0.1    2.1  2  MTS           Methyltransferase small domain
       0.17   11.2   0.0       0.28   10.5   0.0    1.2  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
       0.65    9.3   4.0       0.16   11.3   0.7    1.6  2  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.3     1e-29   2.6e-26       1     108 [.      25     142 ..      25     143 .. 0.90
   2 ?   -2.2   0.0       1.4   3.7e+03      14      32 ..     219     240 ..     214     257 .. 0.68

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 1e-29
                 TTEEEEEEEEEEE-HHHHHHHTTS..TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTS....... CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkgg..kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvs....... 90 
                 pg+v++++  ag C+sDlh++++     ++ ++p++lGHE +G v+++g +v++l+vG+ V+v+ ++ cg+C++C+ g + +Ce+ +   v        
  KIR65910.1  25 PGQVVVRIGGAGACHSDLHLMHDFeaGAVPWNPPFTLGHENAGWVHDLGAGVTGLEVGQPVAVYGAWGCGTCDRCRVGVDPYCENPAAAPVPggggglg 123
                 589******************99766788999***************************************************7666666555666777 PP

                 S-SSSBSEEEEC.GGGEEE CS
       ADH_N  91 ldGgfaeyvvvp.ekklvk 108
                 ldGg+aey +vp ++++v+
  KIR65910.1 124 LDGGMAEYELVPdARHIVP 142
                 ********99997888887 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
                 -HHHHHHHTTS...TTTTSSSS CS
       ADH_N  14 CgsDlhilkgg...kelevklp 32 
                 Cg Dl + +g+   +e+++++p
  KIR65910.1 219 CGADLTLRSGEgtaQEIRAATP 240
                 9999999888754444444444 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.6     4e+03      72      90 ..     166     184 ..     164     185 .. 0.83
   2 !   74.4   0.2   3.2e-24   8.1e-21       1     127 [.     186     311 ..     186     314 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.6
                 HHHHHHCEEEEEEEEECSC CS
  ADH_zinc_N  72 leaalkllkpgGrlvvvGg 90 
                 ++++   l+pg + vv+G+
  KIR65910.1 166 IRRSWHKLAPGSTAVVIGV 184
                 677888899*******996 PP

  == domain 2  score: 74.4 bits;  conditional E-value: 3.2e-24
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHT.TTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykeadlverikelt.ggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeef 97 
                 g+G+ +vq++ka  a +viavd  +e l+la++ Gad ++ + e    ++i+++t gg+g+dvv+++vG+ atl+   ++++  G l++vG+ +g  ++
  KIR65910.1 186 GLGHVGVQILKATTAaRVIAVDTRPEALKLAEECGADLTLRSGE-GTAQEIRAATpGGRGADVVLDFVGADATLRLGAAAARTLGDLTIVGIAGGTLPV 283
                 89****************************************88.9*********66**********************************98888888 PP

                 EHHHHHHTT-EEEEE-SSCHHHHHHHHHHH CS
  ADH_zinc_N  98 dlrnlllkeksilGsllgslreefkealdl 127
                 +++ +   e+si+ + +gs r e+ e+ldl
  KIR65910.1 284 SFFSV-PYEVSIQTTYWGS-RPELIEVLDL 311
                 87775.889**********.9999888887 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.2   8.3e+03      36      55 ..     166     186 ..     160     214 .. 0.64
   2 !   39.1   0.0   5.5e-13   1.4e-09      11     133 .]     232     347 ..     219     347 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.2
                   .HHHHHHEEEEEEEEE--.-- CS
  ADH_zinc_N_2  36 leaslkvlpggGrlvsig.gp 55 
                   +++s++ l++g + v+ig g 
    KIR65910.1 166 IRRSWHKLAPGSTAVVIGvGG 186
                   577777776656667776553 PP

  == domain 2  score: 39.1 bits;  conditional E-value: 5.5e-13
                   STTHH.HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEE..EE----.S-EEE-CHHHCTTT-EEEE--GGG...-...-HHHHHHHHHHHHHHH- CS
  ADH_zinc_N_2  11 tedfe.aatggegvDvvldtvggealleaslkvlpggGrl..vsiggpplsaallkpakkrkgrsvkyeflfsmkas..aqadileelaalieeGkl 102
                   +++++ a  gg+g Dvvld vg +a+l+   ++ +  G+l  v i+      ++l+++++     v ye  +  +++   + + l e+++l + G +
    KIR65910.1 232 AQEIRaATPGGRGADVVLDFVGADATLRLGAAAARTLGDLtiVGIA-----GGTLPVSFFS----VPYEVSI-QTTYwgSRPE-LIEVLDLGARGLV 317
                   33333566678***********888878777777777998334444.....4677777755....4444444.3444544677.************* PP

                   ---EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2 103 rpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   rp  + +fpl++a++A+r+l+ g++ G+ V+
    KIR65910.1 318 RPKTT-TFPLDRAVDAYRRLQDGSVEGRAVI 347
                   ****8.9********************9996 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.4e-05      0.14     103     141 ..     179     217 ..     164     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.4e-05
                 EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHH CS
      Met_10 103 vVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylk 141
                  Vv  + G G+  + i k + a rv+a+d  Pe+ k+ +
  KIR65910.1 179 AVVIGVGGLGHVGVQILKATTAARVIAVDTRPEALKLAE 217
                 4566679****************************9866 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.21   5.4e+02      97     113 ..      49      65 ..      35      77 .. 0.73
   2 ?    8.8   0.1   0.00042       1.1      40      82 ..     185     228 ..     172     249 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.21
                 -EEEEEE---STTTCHC CS
         MTS  97 kfdlivsNPPfhagkat 113
                 +  ++  NPPf  g++ 
  KIR65910.1  49 EAGAVPWNPPFTLGHEN 65 
                 56677789999988873 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00042
                 -TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.E CS
         MTS  40 cGaGvlgaalakespeaevtlvdvdarAlesakenleankle.v 82 
                  G G +g++++k++  a+v +vd   +Al++a+e  ++  l+ +
  KIR65910.1 185 GGLGHVGVQILKATTAARVIAVDTRPEALKLAEECGADLTLRsG 228
                 389*****************************997776666555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00011      0.28      35      73 ..     175     214 ..     164     227 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
                   TTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHH CS
  2-Hacid_dh_C  35 sgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkee 73 
                    g+t  +iG+G +G+   ++lka  + +via+d+++++ +
    KIR65910.1 175 PGSTAVVIGVGGLGHVGVQILKATTAaRVIAVDTRPEALK 214
                   58999999******9999999976655*******988655 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.4   3.5e+03      34      42 ..      72      80 ..      63      83 .. 0.78
   2 ?   11.3   0.7   6.1e-05      0.16      30      77 ..     178     225 ..     171     250 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.4
                 ESTSHHHHH CS
  AlaDh_PNT_C 34 iGgGvaGlq 42
                 +G+Gv Gl+
   KIR65910.1 72 LGAGVTGLE 80
                 899999986 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 6.1e-05
                  EEEEESTSHHHHHHHHHHHHT.T-EEEEEESSHHHHHHHHHTTTCECEE CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakgl.gakVtvlDvrparleqleslgakfvev 77 
                  + +viG+G  G   +++ k+   a+V ++D+rp++l+  e++ga  +++
   KIR65910.1 178 TAVVIGVGGLGHVGVQILKATtAARVIAVDTRPEALKLAEECGAD-LTL 225
                  6799********9999998761679******************99.665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2352.81
//
Query:       KIR65911.1  [L=136]
Description: sterol-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-09   37.0   0.0    4.5e-09   36.7   0.0    1.1  1  SCP2          SCP-2 sterol transfer family
     0.0026   18.0   0.0      0.003   17.8   0.0    1.1  1  Alkyl_sulf_C  Alkyl sulfatase C-terminal


Domain annotation for each model (and alignments):
>> SCP2  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   5.1e-13   4.5e-09      16     100 ..      20     105 ..      10     106 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 5.1e-13
                 HHCCH-EEEEEEECTC.T..EEEEEETTSTEEESSCTTBS-SEEEEEEHHHHHHHHCTSS-HHHHHHTTSSEEEC-HHHHHHHHHHH CS
        SCP2  16 alkklagvlrfdltdlkg..sltldlkegqldvaakdegkadvtlslsledllelaegklnpqkafmqgkLkieGDielaqkleall 100
                 + ++++g++r+d++d +   +++l++ ++q+ v+ ++e +ad +++++ e + +++   ++  +a++   ++ +GD+ l++ l +l+
  KIR65911.1  20 LPENVSGTVRLDIRDDGStdHWFLTIGDQQVGVSRSAE-EADLVVAGDREVFDRIVAEGTHIGAALVRNDVTAQGDLRLLMLLRRLF 105
                 557899*********9779**************77655.*******************************************99997 PP

>> Alkyl_sulf_C  Alkyl sulfatase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.3e-07     0.003      31     114 ..      23     105 ..       2     111 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.3e-07
                   T-EEEEEEEETTTT..EEEEEEEETTEEEE.ECT---TTSSEEEEE-HHHHHHHHTTSS-HHHHHHTTTEEEEE-TCHHHHHHCTB CS
  Alkyl_sulf_C  31 dkdltinlvvtDvd..ekyllrlsngvLthtrkaaqaddadltvtltreqLvalllgkatlgkevaagklkieGdaealakllsll 114
                   + + t+ l + D +  +++ l++ +  +   +  ++a++adl v  +re + +++++ + +g+++   +++ +Gd   l  l  l+
    KIR65911.1  23 NVSGTVRLDIRDDGstDHWFLTIGDQQVGV-S--RSAEEADLVVAGDREVFDRIVAEGTHIGAALVRNDVTAQGDLRLLMLLRRLF 105
                   456667777777643358888888888777.3..35689************************************99998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1049.74
//
Query:       KIR65912.1  [L=688]
Description: amylo-alpha-1,6-glucosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-38  130.3   0.0    1.1e-37  129.5   0.0    1.4  1  GDE_N_bis  N-terminal domain of (some) glycogen debranching e
    8.5e-06   24.9   0.0      5e-05   22.4   0.0    1.9  2  GDE_C      Amylo-alpha-1,6-glucosidase


Domain annotation for each model (and alignments):
>> GDE_N_bis  N-terminal domain of (some) glycogen debranching enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   0.0   1.2e-41   1.1e-37       4     192 ..      11     190 ..       8     191 .. 0.90

  Alignments for each domain:
  == domain 1  score: 129.5 bits;  conditional E-value: 1.2e-41
   GDE_N_bis   4 gdlflvtdtdGdiaeegegsqGlFcrDtRfLsrlelqingespvllsssaekgnsalsvlltnpeledeeggipaetigirrervvngglfeeleltNy 102
                 g++f+v+d++Gd++ + +++ GlF  DtRfLsr+ l+i+g+++  l s +e ++ + +++l  ++  +    + +  +++ r+r +++++ e+l + N+
  KIR65912.1  11 GNSFAVSDAQGDMTPDPRAPIGLFSFDTRFLSRWVLTIDGKRLKAL-SRDEMTYFETRFVLVPGAASH----YVDADVSVIRHRSLDDSFNERLVVLNH 104
                 899*******************************************.666666669999999999666....9************************** PP

   GDE_N_bis 103 nttpvefelslsfdaDFaDlfevrgfr.rekrgkllrleaedeelrlayrgldgvvretriqfsaqpdtvkggtatwrlkLaphetwklgl 192
                 +++p+ef++++++++DFaD  e+++ r r+      ++   ++elrl+y++ + + ret+++   +p +v+ g +t+r++++p+++w++ l
  KIR65912.1 105 SAEPAEFTVRMEIASDFADTAEIKEPRaRRI---AATPMPAEGELRLSYQR-ERFARETVVSS-TAPVEVDPGGMTFRIRVPPNGSWTTDL 190
                 ************************9953433...34566789*******99.99999995544.688899*****************9876 PP

>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.044     4e+02      26      41 ..     268     284 ..     261     295 .. 0.86
   2 !   22.4   0.0   5.6e-09     5e-05      79     290 ..     339     548 ..     330     562 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.044
       GDE_C  26 AGlpwFsd.WGRDtfIa 41 
                  Glpw    +GRD++I+
  KIR65912.1 268 GGLPWAMAlYGRDALIT 284
                 69***9988******96 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 5.6e-09
       GDE_C  79 qealyntvdaslwlieaiekYleyagdaeil.......rriypvlqeilqkyvqG.tkykigldeedglisagerlnqlTWmDakvkgepvtPRdGkav 169
                 ++  y ++d++  ++  +++Y + +gda+++       r +++ + e  + +  G ++y+   ++ +gli++  ++ ++   Da  + ep  PR+   +
  KIR65912.1 339 TYLHYSAADTTPLFVILLDEYERWSGDADLVrelrhpaRMALDWIDEYGDILGDGyVRYQR-RNTRTGLINQCWKNSPDAIVDADGR-EPGLPRA--TC 433
                 45679**************************655555444555777777777777334554.4569*****************9865.6999**5..79 PP

       GDE_C 170 einaLwyaaLkileelaekalge.akkssykelaekikesfekkFwdeaaaavakreilaDvlksseekdlslRpNflialslapellseekakkvlek 267
                 e+++ +y+a + +++la++  ++ a + + ++ a+++ke f++ Fw       ++r+++a  l+++ e    l  N+     l   +++e++a++v ++
  KIR65912.1 434 EVQGYAYDAKRRAARLAREFWDDpAYADRLEREAAELKERFNRDFWL------SHRDYYALALGPDGEPVDALASNMGH--LLWSGIVDEKRAEAVAQH 524
                 ******************88887677888888999999999999998......88999999999999877788888654..344444444444444433 PP

       GDE_C 268 .aeeeLltplGlktLdpedpeYkg 290
                     ++   +G++tL+  +  Y++
  KIR65912.1 525 lLGPRMFSGWGVRTLADGQRVYNP 548
                 145677788999999988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4921.81
//
Query:       KIR65913.1  [L=167]
Description: hypothetical protein TK50_11565 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-45  154.8   3.7    2.5e-45  154.6   3.7    1.0  1  DUF664      Protein of unknown function (DUF664)
    1.7e-11   44.7  13.9      6e-11   43.0   7.2    1.9  2  DinB_2      DinB superfamily
    0.00045   20.9  15.1     0.0041   17.8   9.5    2.3  2  MDMPI_N     Mycothiol maleylpyruvate isomerase N-terminal dom
     0.0018   18.2   0.1       0.02   14.8   0.1    2.1  1  DinB        DinB family
     0.0033   16.8   0.1     0.0046   16.3   0.1    1.2  1  GSK-3_bind  Glycogen synthase kinase-3 binding
  ------ inclusion threshold ------
      0.046   13.8   0.3        1.4    9.0   0.0    2.3  2  TetR_C_34   Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> DUF664  Protein of unknown function (DUF664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.6   3.7   8.2e-49   2.5e-45       2     150 .]      15     162 ..      14     162 .. 0.95

  Alignments for each domain:
  == domain 1  score: 154.6 bits;  conditional E-value: 8.2e-49
                 HHHHHHHHHHHHHHHHTT--GGGTT--BTTB-S-HHHHHHHHHHHHHHHHHHHTT-S---TTTSHHTTTSSS---SS---HHHHHHHHHHHHHHHHHHH CS
      DUF664   2 LeafLdrqretllakleGLsdeqarrravpsstsllgLvkHvaevErgwfrrvlggeeevpldrsaadpdadfelaedetladllaeyrravaradavv 100
                 L+++L++qr++l+++++GL+deqa+ r++ s  +l+gL+kHva  E++w+r+++ g+e+++  +  +d+ + f++ + ++la+ll++y+r++ ++d++v
  KIR65913.1  15 LLQALRQQRAFLRRTVDGLTDEQAALRSTVSELCLGGLIKHVALTEQTWLRFAVHGAEAMRAGQ--DDWADGFRMGD-DSLATLLDRYARVASATDELV 110
                 899*************************66666***************************8766..8*******876.589****************** PP

                 TT--HHHHTSB-T-.........SBHHHHHHHHHHHHHHHHHHHHHHHHHH-X CS
      DUF664 101 aaeldldetvrvpkapwgee...vslrwvlvhlieetarHaGhadilRelidG 150
                 a +ldld+++++p+apw+e+   +s+r+vl+h+i+et +HaGhadilRe+idG
  KIR65913.1 111 A-TLDLDAAHPLPAAPWFEPgasWSVRRVLLHVIAETSQHAGHADILREAIDG 162
                 *.**************************************************9 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.5   5.3e-05      0.16      65      99 ..       9      43 ..       3      50 .. 0.87
   2 !   43.0   7.2     2e-14     6e-11       1     127 [.      18     152 ..      18     153 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.3e-05
      DinB_2 65 ppsaaealaylaevrarllallealtdadldrplt 99
                 +++a++l++l+++ra l+ ++++ltd++++ + t
  KIR65913.1  9 TGERADLLQALRQQRAFLRRTVDGLTDEQAALRST 43
                5789***********************99887665 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 2e-14
      DinB_2   1 qlerararllalledlteeelnrqpspgkwsiawllaHlgnveelllerlr.geeaprpgldpltp......psaaealaylaevrarllallealtda 92 
                 +l+++ra l+  +++lt+e++  +    +  ++ l+ H++++e+ +l+ +  g+ea r+g d+ ++       s+a +l+++a+v  ++ +l+++l+  
  KIR65913.1  18 ALRQQRAFLRRTVDGLTDEQAALRSTVSELCLGGLIKHVALTEQTWLRFAVhGAEAMRAGQDDWADgfrmgdDSLATLLDRYARVASATDELVATLDL- 115
                 6899*******************************************99998999998888877776777777************************9. PP

      DinB_2  93 dldrpltap..hpglgkltlgdvllfvlqHeqhHleq 127
                 d++ pl+a+  +++ + +++++vll+v++++ +H ++
  KIR65913.1 116 DAAHPLPAApwFEPGASWSVRRVLLHVIAETSQHAGH 152
                 8888888888999*********************986 PP

>> MDMPI_N  Mycothiol maleylpyruvate isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   9.5   1.4e-06    0.0041       1     108 [.      19     117 ..      19     126 .. 0.75
   2 ?    3.9   4.4     0.027        81      14      45 ..     120     149 ..      99     163 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.4e-06
     MDMPI_N   1 lreewaalaalvagLtdeqwaapspcpGWtvadlvaHlarsaralaaalaaegaesalardaaaalvtaadaeavdlaaslapeallaafraavtrlaa 99 
                 lr+++a+l+++v+gLtdeq a +s   +  ++ l+ H+a +++++++++  + ae+ +a +        +d ++  +   ++ + ll++ ++ + ++++
  KIR65913.1  19 LRQQRAFLRRTVDGLTDEQAALRSTVSELCLGGLIKHVALTEQTWLRFAVHG-AEAMRAGQ--------DDWADGFRMGDDSLATLLDRYARVASATDE 108
                 799**************************************99999997553.33332211........124555566677777777777777777766 PP

     MDMPI_N 100 alaalppda 108
                  +a l+ da
  KIR65913.1 109 LVATLDLDA 117
                 666666655 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.027
     MDMPI_N  14 gLtdeqwaapspcpGWtvadlvaHlarsaral 45 
                  L+ + w +p   + W+v+ +++H++ + +  
  KIR65913.1 120 PLPAAPWFEPG--ASWSVRRVLLHVIAETSQH 149
                 23333344444..67*********98876655 PP

>> DinB  DinB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   6.7e-06      0.02       9     138 ..      14     151 ..       1     156 [. 0.64

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.7e-06
                 HHHHHHHHHHHHHHHHHCT--CCCTT--SSTTS--HHHHHHHHHHHHHHHHHHHHH........SSSGGGT---------HHHHHHHHHHHHHHHHCT- CS
        DinB   9 ellqynqwardrtldaiaaLpdeelkaengegfqsvkqtlnHvldveelwlsrleg......eegapavddqterkeleeldalrealderliafldql 101
                  llq ++++r  +++ +  L+de+ + + + +   ++++++Hv+ +e+ wl++                 + + ++ +   d+  ++l +r++ ++++ 
  KIR65913.1  14 DLLQALRQQRAFLRRTVDGLTDEQAALRSTVSELCLGGLIKHVALTEQTWLRFAVHgaeamrA------GQDDWADGFRMGDDSLATLLDRYARVASAT 106
                 689999*********************************************996664555543......333333333333333333333333333333 PP

                 -H........HHHHSEE------SS-EEHHHHHHHHHHHHHHHHH CS
        DinB 102 td........leretlldradagtvkmtlaelLaHvinHethHrG 138
                  +         + +  + +  + + + + + +L Hvi     H G
  KIR65913.1 107 DElvatldldAAHPLPAAPWFEPGASWSVRRVLLHVIAETSQHAG 151
                 332222111122333334444556667777788888888888877 PP

>> GSK-3_bind  Glycogen synthase kinase-3 binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.5e-06    0.0046      35      93 ..      97     155 ..      67     166 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.5e-06
  GSK-3_bind  35 gssgevdrlvaqiGetlqldaaqdsPaspcaapGaplraprvlaavradkarsparqll 93 
                 +  + v      +  tl+ldaa+  Pa+p   pGa  +  rvl  v a++++ ++++ +
  KIR65913.1  97 DRYARVASATDELVATLDLDAAHPLPAAPWFEPGASWSVRRVLLHVIAETSQHAGHADI 155
                 3334444444444569***************************9999999887765433 PP

>> TetR_C_34  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00047       1.4      42      89 ..      14      61 ..       3      74 .. 0.90
   2 ?    2.9   0.0     0.037   1.1e+02      57      94 ..     123     160 ..      93     166 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00047
   TetR_C_34 42 allerlerlaalleralPelseeqaaallaaalalvaglwplahpsea 89
                +ll++l + +a+l+r++  l++eqaa   ++   +++gl ++ + +e+
  KIR65913.1 14 DLLQALRQQRAFLRRTVDGLTDEQAALRSTVSELCLGGLIKHVALTEQ 61
                689************************999999999999999887775 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.037
   TetR_C_34  57 alPelseeqaaallaaalalvaglwplahpsealreay 94 
                 a P+ ++++ + +  ++l+++a   ++a +++ lrea+
  KIR65913.1 123 AAPWFEPGASWSVRRVLLHVIAETSQHAGHADILREAI 160
                 67999999999999999999999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1137.23
//
Query:       KIR65914.1  [L=302]
Description: hypothetical protein TK50_11570 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-57  192.9   0.0    8.7e-57  192.7   0.0    1.0  1  DUF72     Protein of unknown function DUF72


Domain annotation for each model (and alignments):
>> DUF72  Protein of unknown function DUF72
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.7   0.0   4.8e-61   8.7e-57       1     217 [.      22     286 ..      22     287 .. 0.89

  Alignments for each domain:
  == domain 1  score: 192.7 bits;  conditional E-value: 4.8e-61
                 B.TT..CCC.HHHHHCCT-SEEEE-HHCCSSS-HHHHHHHHCTS-TT-EEEEE--CCCCCS.........................G-.SCHHHHHHHH CS
       DUF72   1 Ypeglkkke.rLeyYarhfntVEinstFYalpspetvakwaaqtpedFrFavKapraithe....................r....ne.daeealerfl 73 
                 Yp+ +++   rL +Ya++f +VE+++++Ya+p pet a w+a+tp++F+F vKa++ +t +                    r         +e+++rf 
  KIR65914.1  22 YPRAVNTPAgRLGFYAERFGLVEVDTSYYAVPVPETTAGWVAATPPGFTFDVKAFSLFTGHptpvsvlprdlrpaggpsrvRrrdlPAgAYDELWSRFR 120
                 9999999999**************************************************8777778777777776666551454423358999****9 PP

                 HH.CHHH..CT-EEEEEEE--TT--S..HHHHHHHHHH..TTTS-SEEEE--BGGGH.......HHHHHHHHTT-E.EEEE--..SSC--------SST CS
       DUF72  74 esalepL..geklgpllfQlppsfkfd.eenlerLeaf..laalpllavEvRhrswf.......ellellrehgva.vvldep..kkpklpledvttad 157
                 ++ lep+  +++lg++l+Q+pp+++++ +++++ +e+   l+ ++ + vE+Rh swf       ++l llreh++  v++d+p   ++++p+  v+ta+
  KIR65914.1 121 AA-LEPIaaADRLGAVLLQFPPWLARSaAAERRIVETAgrLRPWR-VSVELRHGSWFadeatalRTLTLLREHDLSfVCVDMPqgFASSVPPILVATAN 217
                 96.****766**************998565555555556666665.**********999999888***********88889889999************ PP

                 EEEEEE--S.........HHTTB----HHHHHHHHHHHHHHHTCSSEEEEEE-SBCCCHHHHHHHHHHH CS
       DUF72 158 fvyvRlhgr.........eeryayrYseeelaewaerikawaaegrevyvffnndaegqaplnaraLae 217
                  ++vR+hg+         +++++y+Y e+el+ wae +  +a++ +e++v+fnn+ ++qa ++a++Lae
  KIR65914.1 218 PAVVRFHGHsaawesgdkQDKFRYAYGERELRTWAELLTGLADGVDELHVLFNNCCGDQAQRDAARLAE 286
                 *****************659***********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2103.01
//
Query:       KIR65915.1  [L=209]
Description: hypothetical protein TK50_11580 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.018   15.4   3.4      0.037   14.4   3.4    1.6  1  CopD            Copper resistance protein D
        1.8    8.9   6.3         22    5.4   0.0    3.3  3  Transgly_assoc  Transglycosylase associated protein


Domain annotation for each model (and alignments):
>> CopD  Copper resistance protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   3.4   4.1e-06     0.037      20     103 ..      66     162 ..      46     164 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.1e-06
        CopD  20 vtGvvnallrvg.lagllttayGrlllaKlalllvllalaalnrfrlvprleaa..............tgaggqalrhrlrrsaalelvlalvvlllaa 103
                 + G+v   l ++ +  l++++ Gr+  +K+al + +la+ ++ r +l  rl++a              t+a+ ++ ++++r +  +  +l  + ++++a
  KIR65915.1  66 LAGAVG-ELATEsPRMLAQSGVGRMSAVKTALTVGALAVTGYSR-LLGMRLQRAggpsvegitepnpqTPADVASYQRQMRLLQWTIPALTGALVVVTA 162
                 555555.555564678888*************************.566667777788999998888887777777777777666666666666666555 PP

>> Transgly_assoc  Transglycosylase associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   1.3    0.0081        73       8      20 ..      18      30 ..      15      38 .. 0.83
   2 ?   -0.5   0.2      0.17   1.6e+03       6      16 ..      62      72 ..      59      76 .. 0.75
   3 ?    5.4   0.0    0.0025        22      27      44 ..     145     163 ..     137     164 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0081
  Transgly_assoc  8 AfvGgfllgllgi 20
                    A+ Gg l+g+lg+
      KIR65915.1 18 AWFGGSLMGALGV 30
                    9***********9 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.17
  Transgly_assoc  6 vGAfvGgfllg 16
                    +GA ++g+++ 
      KIR65915.1 62 IGAHLAGAVGE 72
                    68888887765 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0025
  Transgly_assoc  27 lasl.ivaiiGAiILLfiv 44 
                     l ++ i+a+ GA +++  +
      KIR65915.1 145 LLQWtIPALTGALVVVTAY 163
                     55677**********9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1624.07
//
Query:       KIR65916.1  [L=287]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-16   59.8   0.9    1.2e-15   57.5   0.9    1.9  1  Hydrolase_4    Serine aminopeptidase, S33
    1.8e-14   54.0   0.1    2.1e-11   43.9   0.3    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
    1.4e-08   35.7  25.7    1.4e-08   35.7  25.7    1.6  2  Abhydrolase_6  Alpha/beta hydrolase family
    0.00026   21.2   0.2    0.00041   20.5   0.2    1.3  1  Thioesterase   Thioesterase domain
     0.0051   16.3   0.0     0.0083   15.6   0.0    1.3  1  Peptidase_S9   Prolyl oligopeptidase family
     0.0073   16.2   0.0       0.14   12.0   0.0    2.1  2  Ser_hydrolase  Serine hydrolase
  ------ inclusion threshold ------
       0.11   12.1   0.1       0.15   11.7   0.1    1.4  1  Esterase       Putative esterase
       0.18   11.3   0.0       0.34   10.4   0.0    1.4  2  LIDHydrolase   Lipid-droplet associated hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.9   5.1e-19   1.2e-15       6     157 ..      35     196 ..      30     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 5.1e-19
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse..gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypd.k 100
                  vvv+ + ++  ++ y  +a++L a+G av+  D rG G+s   + r+    + ++ +D+ a++ ++k +  ++p +llGhS+GG  all+l+ +    
   KIR65916.1  35 VVVIWPAMGVRARYYRPFAAHLRAAGLAVVVADLRGSGESTpaPSRACRYGYAELAADVGAVLAALKPRLDGRPTILLGHSLGGQAALLHLALHGTgA 132
                  8999*************************************999999999***************************************996665548 PP

  Hydrolase_4 101 vaglilsaPalkikaklk.appllkl........llkllgkllpklqvsnnlkadslsrdpevvaa 157
                  v+gl l+a  + ++  ++ ++++  l        +++llg ++p + + ++ +a+ + rd ++ a+
   KIR65916.1 133 VDGLALVAVGVPYWRTYPgPRRFGVLpytqgiaaTARLLG-VWPGWGF-GGRQARGVIRDWAHTAR 196
                  99*********99999854444444443333331444444.4677777.55666666666655555 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.3   9.6e-15   2.1e-11       1     106 [.      34     141 ..      34     166 .. 0.88
   2 !    8.0   0.0   0.00086       1.9     189     244 ..     188     249 ..     179     255 .. 0.75

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 9.6e-15
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCT...TSSEE.EEEETHHHHHHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalg...ddklt.lvGhSmGGmialayaa 92 
                    pv+vi ++++  + +++   +a +L  +g  v++ DlrG+g+S+pap+    +yg a +a+d+ ++l+al+   d+++t l+GhS+GG+ al  +a
     KIR65916.1  34 PVVVIWPAMGVRARYYRP--FAAHLRAAGLAVVVADLRGSGESTPAPSRA-CRYGYAELAADVGAVLAALKprlDGRPTiLLGHSLGGQAALLHLA 126
                    688999999998999999..999**999*******************987.69***********8877776333456666**************** PP

                    HH.GGGEEEEEEESE CS
  Abhydrolase_1  93 ey.perVkalvllga 106
                    ++    V++l+l++ 
     KIR65916.1 127 LHgTGAVDGLALVAV 141
                    **999*****99987 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00086
                    HHHHHHCCHHHHHHHHHC......THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEE CS
  Abhydrolase_1 189 ieqwpttdsaklllrlre......lknvlaptlvisgtsDplvppkaledlaqllpkkrlvv 244
                    i  w+ t++  ++  l++      l+   +p+l +s ++D+++p++  + l+++l  +++v+
     KIR65916.1 188 IRDWAHTARTGRFPALDGvdveaaLRTLDVPVLAVSVDDDQYTPHGTVDHLCGKLTAATVVR 249
                    556777777777777777665666556666*******************9999988866555 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7  25.7   6.1e-12   1.4e-08       2     192 ..      37     244 ..      35     271 .. 0.58
   2 ?   -1.0   0.2      0.99   2.2e+03       6      36 ..     258     286 ..     255     286 .. 0.65

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 6.1e-12
                    EEE--GC.....GCHHHH.HHHHCCTCEEEEE--TTSTS-GGCS.....--HHH.CHHHHHHHCCTT....TTSEEEEEETCHHHHHHHHHHCC.. CS
  Abhydrolase_6   2 lllHGagssassWlvapL.aallaagvhvlapDlpGhGrsdppp.....ldled.ladlaalldelaa..gggpvvlvGHSlGGalalaaapla.. 86 
                    +  ++ g  a+ ++  p+ a l+aag +v++ Dl+G G+s+p+p     +++++ +ad+ a+l++l+   +g+p +l+GHSlGG  al+   ++  
     KIR65916.1  37 VIWPAMGVRARYYR--PFaAHLRAAGLAVVVADLRGSGESTPAPsracrYGYAElAADVGAVLAALKPrlDGRPTILLGHSLGGQAALL---HLal 127
                    56677676677775..77566677778889********8888887777888877557778888888889999999**********9999...4433 PP

                    ......EEEEES-......----TTTS----TTHHHHHHTT-C.CCCHCCHS-HSCCCCHHHCCCCHCHCCCGHHHHCCHHC...HTTCCHHTT-T CS
  Abhydrolase_6  87 ....lvvgvlldp..pp..talpagllaaalelllallallrl.lawlsreplprlfladedadaawrarlarlaallaglg...llpaaawadlp 170
                         v g++l +   p   ++p + +  +l++ ++  a +rl   w+       +f +  +  + + + +a+ a++  ++        aa+++l 
     KIR65916.1 128 hgtgAVDGLALVAvgVPywRTYPGPRRFGVLPYTQGIAATARLlGVWPG-----WGFGGRQA--RGVIRDWAHTARTGRFPAldgVDVEAALRTLD 216
                    3457556633333221244566666666666666666665554434442.....35555444..22222222222222222211244477999999 PP

                    TGCEEEC.TT-C.....HHHHCHHCCCH CS
  Abhydrolase_6 171 vpllvlg.geDp.....lvprllerlla 192
                    vp+l +  ++D+     +v +l  +l a
     KIR65916.1 217 VPVLAVSvDDDQytphgTVDHLCGKLTA 244
                    9998776355555444422233222222 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.99
                    -GC.....G.C.HHHHHHHHCCTCEEEEE--TT CS
  Abhydrolase_6   6 GagssassW.l.vapLaallaagvhvlapDlpG 36 
                    Ga++++  W +  +p+    a +v+ +a DlpG
     KIR65916.1 258 GAPLDHFTWvRaSGPV----AVRVAAWAADLPG 286
                    5666666664234455....5568999999998 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   1.8e-07   0.00041       4      80 ..      36     121 ..      33     126 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.8e-07
                   EEE--TTC.CSGGGHHHHHHCTTCEEEEEEECSTTST.....SHHHCTTCHHHHHHHH...HHHHHHH-SSSSEEEEEETHHHHHH CS
  Thioesterase   4 flfppagG.sasvfrslasklsdpvvevlavqlpgre.....rdepplesieelaaey...aealrqiqpegPyalfGhSlGgllA 80 
                   ++  pa G  a+++r +a++l++   +v++  l+g +      + ++  + +elaa +   ++al+++ +  P+ l GhSlGg+ A
    KIR65916.1  36 VVIWPAMGvRARYYRPFAAHLRAAGLAVVVADLRGSGestpaPSRACRYGYAELAADVgavLAALKPRLDGRPTILLGHSLGGQAA 121
                   5555777779*************988888999999985444333344457899*997511166677777777***********977 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.7e-06    0.0083       9      83 ..      55     126 ..      48     158 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.7e-06
                   HHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHH CS
  Peptidase_S9   9 lladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaaln 83 
                    l+++G +vvva++rGsg+   a  +a+++ + +  ++D+ a++ al  +   d +  ++ G+S GG+ ++  l+
    KIR65916.1  55 HLRAAGLAVVVADLRGSGESTPAPSRACRYGYAE-LAADVGAVLAAL--KPRLDGRPTILLGHSLGGQAALLHLA 126
                   4679************************998865.578999999999..568999*************9987766 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   6.3e-05      0.14      55      90 ..     107     142 ..      87     163 .. 0.83
   2 ?    1.9   0.0     0.078   1.7e+02     111     146 ..     213     248 ..     195     255 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.3e-05
                    TTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET-- CS
  Ser_hydrolase  55 ekvvlvAHSlgclavlhaaelqlakkvagalLVapa 90 
                    ++++l+ HSlg  a+l  ++l+   +v+g  LVa+ 
     KIR65916.1 107 RPTILLGHSLGGQAALLHLALHGTGAVDGLALVAVG 142
                    5799*******998877777**************75 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.078
                    SHHCCHCEEEEETTBTTC-HHHHHHHHHHCT-EEEE CS
  Ser_hydrolase 111 eklpfpslvvaSenDpyvsfeeaeelaeawgaelvd 146
                    ++l +p l v+ ++D+y +    ++l  ++ a++v+
     KIR65916.1 213 RTLDVPVLAVSVDDDQYTPHGTVDHLCGKLTAATVV 248
                    67899999************9999999988887765 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   6.7e-05      0.15      61     135 ..      64     128 ..      16     178 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.7e-05
                 ECCCSS-TTTTTSBTTSBB.TTEEETTCCCCCCHCHHHHTHHHHHHHHHCSEECCC.EEEEEETHHHHHHHH.HHHC CS
    Esterase  61 vvvprggessfysdwdlgarfyenategpgaeayetfltqeLlplldanfrtapdg.ravaGqSmGGlgALi.lalk 135
                 vv +  g              +++a++  +++ y + l++ +  +l+a ++  + + + ++G+S+GG +AL+ lal+
  KIR65916.1  64 VVADLRGSG-----------ESTPAPSRACRYGYAE-LAADVGAVLAALKPRLDGRpTILLGHSLGGQAALLhLALH 128
                 555544444...........3467777777777765.677778888888888877789************8615554 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00015      0.34      16      98 ..      47     120 ..      43     140 .. 0.88
   2 ?   -3.6   0.0       2.9   6.6e+03     231     250 ..     224     243 ..     215     250 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
  LIDHydrolase  16 eFYetFlsllseklnpelevlgishaGfeleeeekeakenekvfsLedQiehkedflkellekaksekdvklilvGHSvGaYi 98 
                   ++Y++F+++l       l v++  ++G  +++ +++++ +  + +L   +  + + lk  l+      ++  il+GHS G   
    KIR65916.1  47 RYYRPFAAHLRAA---GLAVVVADLRGSGESTPAPSRACRYGYAELAADVGAVLAALKPRLD------GRPTILLGHSLGGQA 120
                   7**********99...8*************99999999999999999999999999999995......9999********755 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.9
  LIDHydrolase 231 gkkDhWvpeetrdelkellg 250
                   +++D+++p+ t d+l  +l 
    KIR65916.1 224 VDDDQYTPHGTVDHLCGKLT 243
                   57899999999998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2038.47
//
Query:       KIR65917.1  [L=421]
Description: glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-32  110.0   0.0    1.5e-31  109.2   0.0    1.3  1  Glycos_transf_1  Glycosyl transferases group 1
    1.3e-29  103.3   0.7      3e-29  102.1   0.2    1.8  2  Glyco_trans_1_4  Glycosyl transferases group 1
    5.3e-29  101.7  21.3    5.3e-29  101.7  21.3    2.4  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    1.6e-28   99.8   6.7    1.6e-28   99.8   6.7    1.7  2  Glyco_transf_4   Glycosyltransferase Family 4
    1.2e-10   41.6   0.0    2.3e-10   40.7   0.0    1.5  1  Glyco_trans_1_2  Glycosyl transferases group 1
    8.4e-05   22.4   0.1      0.059   13.1   0.0    2.4  2  Glyco_transf_5   Starch synthase catalytic domain
    0.00026   21.0   0.0    0.00074   19.6   0.0    1.7  1  Glyco_trans_4_2  Glycosyl transferase 4-like
  ------ inclusion threshold ------
       0.12   10.9   0.3        0.2   10.2   0.0    1.6  2  Glycogen_syn     Glycogen synthase


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   0.0   6.8e-35   1.5e-31      13     164 ..     227     379 ..     221     387 .. 0.94

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 6.8e-35
                      TT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.........STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEE CS
  Glycos_transf_1  13 ekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG........ngeeekelkklaeelelsdnviflgevsredleellknadifvl 98 
                        ++ +l+vgrl ++ g++ +++a++       p++ +vi+G              +l +lae++++ d+v+++g v+r +l +++++ad++v+
       KIR65917.1 227 PARPRVLTVGRLAERMGLQEVVRAMPA-----VPDAECVIVGgppvgllpADGFARRLTALAESCGVADRVRLVGAVPRAELAAWYRSADVLVA 315
                      567899********************6.....6999**************88999*************************************** PP

                      EESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHH CS
  Glycos_transf_1  99 psisEgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrer 164
                          E+fG+++lE ma+g+pv+ +++gg+a++v+dg tG lv+p ++ al  air+ll d+   +r
       KIR65917.1 316 APWHEPFGLTPLEGMACGVPVVGTDVGGIADTVVDGLTGDLVPPRDPRALGVAIRRLLADN--VRR 379
                      ************************************************************8..444 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.2   4.9e+03      93     104 ..     139     151 ..     132     161 .. 0.76
   2 !  102.1   0.2   1.3e-32     3e-29       1     134 []     229     375 ..     229     375 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.2
                      TT-EEEE-TGG.G CS
  Glyco_trans_1_4  93 aglpvVatdvg.g 104
                      ag+pvV t  + g
       KIR65917.1 139 AGVPVVLTYHAlG 151
                      89****9976434 PP

  == domain 2  score: 102.1 bits;  conditional E-value: 1.3e-32
                      SEEEEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---...........HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--. CS
  Glyco_trans_1_4   1 rpvilfvGrleenvkgvdllleavpllrkkdvrlvivGdgp.rp........eeleelaa..gleerveftGfv..edlaellaaadvfvaPs. 80 
                      rp++l+vGrl +++ g++ +++a+p++   d+++vivG gp           ++l +la+  g+++rv+++G v  ++la+++++adv+va   
       KIR65917.1 229 RPRVLTVGRL-AERMGLQEVVRAMPAVP--DAECVIVG-GPpVGllpadgfaRRLTALAEscGVADRVRLVGAVprAELAAWYRSADVLVAAPw 318
                      689*******.566**************..67******.64322455777878888877679************8888************9888 PP

                      .---SHHHHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  81 .egfglkllEamaaglpvVatdvggiaevv..gengllvppgdpealaeailrLled 134
                       e fgl+ lE ma+g+pvV tdvggia++v  g +g lvpp+dp al  ai rLl+d
       KIR65917.1 319 hEPFGLTPLEGMACGVPVVGTDVGGIADTVvdGLTGDLVPPRDPRALGVAIRRLLAD 375
                      **************************99999************************97 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7  21.3   2.3e-32   5.3e-29       1     160 []      37     210 ..      37     210 .. 0.82
   2 ?   -4.0   8.6       7.7   1.7e+04      48     138 ..     282     385 ..     218     403 .. 0.48

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 2.3e-32
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgape..leedgvrvhrlpvprrps.plad.laalralrrll....rqrrerpdvvhahsptagl 86 
                      gG+ ++vaela++L+ +Gh+V+v+t+++ p+ p+   ++dg +v+++p++++++ p a  l +l  + r+l    r   + pdv hah +t+gl
       KIR65917.1  37 GGQHVHVAELAAELVGQGHDVRVYTRRDSPALPDavPTGDGYQVWHVPAGPARRlPSAElLPHLGEFGRWLagqwRDGGWLPDVAHAHFWTSGL 130
                      8******************************888456699********999985222222558888888888776889**************** PP

  Glyco_trans_4_4  87 aarlarrrrgiplvvtlh....glllrrg....sgavrrlyralerrllrradavlvvseaeaeelralgvpadrvvvvpng 160
                      a ++a rr+g+p+v+t+h    ++++r++    +g+ +r     er+l r +d+v+v s++e+ el++lgvp++r+++vp g
       KIR65917.1 131 ATVHAGRRAGVPVVLTYHalgaAAARRQRdprhAGPPGR--LGYERALGRAVDRVVVQSQEEVGELVRLGVPRSRMALVPAG 210
                      ******99**********443212233333322333333..447************************************87 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 7.7
  Glyco_trans_4_4  48 prrpspladlaal..........ralrrll.rqrrerpdvvhahspt.aglaarlarrrrgiplvvtlh.........glllrrg.....sgav 115
                       ++         +           a+ r+  ++  +  dv++a  ++   ++  l  ++ g+p+v t           g            +++
       KIR65917.1 282 LAE---------ScgvadrvrlvGAVPRAElAAWYRSADVLVAAPWHePFGLTPLEGMACGVPVVGTDVggiadtvvdG-----LtgdlvPPRD 361
                      222.........1222222111222222221223455788888888644444445556779999888764444333321.....1223334445 PP

  Glyco_trans_4_4 116 rrly.ralerrllrradavlvvse 138
                      +r++  a+ r+l+ +++++ + ++
       KIR65917.1 362 PRALgVAIRRLLADNVRRFAYATA 385
                      555523344444444444444444 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   6.7   7.3e-32   1.6e-28       1     167 [.      36     212 ..      36     214 .. 0.95
   2 ?   -1.9   0.0       1.3   2.8e+03      95     102 ..     332     339 ..     282     394 .. 0.64

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 7.3e-32
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeev........elvvrvprvplpllkrllrslaflrrlrrllkre..kpDvvHahspaalg 85 
                     +GG+ +hv eLa +L  +Gh+V+v+t++d+++l+++v        ++v ++p+++lp+ + l++   f r l+ +++ +   pDv Hah++ +++
      KIR65917.1  36 AGGQHVHVAELAAELVGQGHDVRVYTRRDSPALPDAVptgdgyqvWHVPAGPARRLPSAELLPHLGEFGRWLAGQWRDGgwLPDVAHAHFWTSGL 130
                     59******************************************999999***************************99999************* PP

  Glyco_transf_4  86 aallalrrrlgiplVltvHglye..krllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvD 167
                     a ++a rr  g+p+Vlt+H l +   r+ +  +  + + +  +er l r++drv++ S+++  el++ +gvp+++++ +p Gv+
      KIR65917.1 131 ATVHAGRR-AGVPVVLTYHALGAaaARRQRDPRHAGPPGRLGYERALGRAVDRVVVQSQEEVGELVR-LGVPRSRMALVPAGVN 212
                     ****9998.*************998777777777888899999************************.***************8 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.3
  Glyco_transf_4  95 lgiplVlt 102
                      g+p+V t
      KIR65917.1 332 CGVPVVGT 339
                     45555554 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0     1e-13   2.3e-10       9      90 ..     320     403 ..     301     405 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1e-13
  Glyco_trans_1_2   9 espnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydhraeql 90 
                      e + l  +E +acG++++ +d  g+++ + +g ++ l+   d+  l  +ir+lla+  +r a a+aa  r+++++++++ aeql
       KIR65917.1 320 EPFGLTPLEGMACGVPVVGTDVGGIADTVVDGLTGDLVPprDPRALGVAIRRLLADNVRRFAYATAALDRIRSRYSWRRCAEQL 403
                      55778899******************************9*******************************************98 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1     0.002       4.5      17      43 ..      38      64 ..      35      87 .. 0.81
   2 !   13.1   0.0   2.6e-05     0.059     128     175 ..     113     153 ..      95     190 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.002
  Glyco_transf_5 17 GLadvvgaLpkaLaklghdvrvilPry 43
                    G   +v++L+ +L  +ghdvrv + r 
      KIR65917.1 38 GQHVHVAELAAELVGQGHDVRVYTRRD 64
                    555689****************99876 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.6e-05
  Glyco_transf_5 128 klgwkpdvihahDWhtalvpallkelykerglfkkiktvftiHNlayq 175
                       gw pdv hah W ++l+ + +            +++v+t H l   
      KIR65917.1 113 DGGWLPDVAHAHFWTSGLATVHAGRRA-------GVPVVLTYHALGAA 153
                     33899**************88777663.......4********98755 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.3e-07   0.00074      10     111 ..      40     152 ..      36     187 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.3e-07
  Glyco_trans_4_2  10 svhtlrlakeLakrgyeVhvitp.kkga..kdeleaegihvhrlkvd..rkg.pleylk.a....fklkklikkik..PDvvhahyakpygllg 90 
                       vh+ +la eL  +g++V v t+ + +a  + +   +g++v  ++ +  r+  ++e+l  +    ++l+  +++ +  PDv hah  ++ gl+ 
       KIR65917.1  40 HVHVAELAAELVGQGHDVRVYTRrDSPAlpDAVPTGDGYQVWHVPAGpaRRLpSAELLPhLgefgRWLAGQWRDGGwlPDVAHAHFWTS-GLAT 132
                      689********************5555577888889999999997777766655555532344446888888887666********887.8988 PP

  Glyco_trans_4_2  91 slaarlsgvipvvlsvwGldv 111
                        a r++g +pvvl+ + l+ 
       KIR65917.1 133 VHAGRRAG-VPVVLTYHALGA 152
                      89999999.********9987 PP

>> Glycogen_syn  Glycogen synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.3      0.86   1.9e+03     145     175 ..     120     149 ..     119     151 .. 0.79
   2 ?   10.2   0.0   8.9e-05       0.2     467     504 ..     308     345 ..     301     409 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.86
                   EEEEETGGGHHHHHHHHHTT-SEEEEEEESS CS
  Glycogen_syn 145 vahfhewlaGvgliltrkrkldvatvfttha 175
                   vah h w +G + +    r+  v  v t ha
    KIR65917.1 120 VAHAHFWTSGLATV-HAGRRAGVPVVLTYHA 149
                   79********9965.5567778888888887 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 8.9e-05
                   HH-SEEE---SSBSS-HHHHHHHHTT--EEEETTBHHH CS
  Glycogen_syn 467 rGchlGvfpsyyepwGytpaectvmGipsvttnlsGfG 504
                   r + + v + ++ep+G tp e    G+p v t++ G  
    KIR65917.1 308 RSADVLVAAPWHEPFGLTPLEGMACGVPVVGTDVGGIA 345
                   66677788999***********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3038.85
//
Query:       KIR65918.1  [L=407]
Description: hemin transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-10   41.5   0.0    2.5e-10   40.9   0.0    1.3  1  Globin         Globin
    3.4e-10   40.5   0.0    6.3e-10   39.7   0.0    1.5  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    1.2e-08   35.2   0.0    2.5e-08   34.1   0.0    1.5  1  FAD_binding_6  Oxidoreductase FAD-binding domain
    0.00014   21.8   0.0    0.00021   21.2   0.0    1.2  1  Protoglobin    Protoglobin
  ------ inclusion threshold ------
      0.038   14.1   0.0      0.083   13.0   0.0    1.5  1  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> Globin  Globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0     7e-14   2.5e-10       3     109 ..       8     104 ..       6     105 .. 0.92

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 7e-14
                 HHHHHHHHHHHTHHHHHHHHHHHHHHHHSGGGGGGSTTTTTTT-HHHHCTSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHCSTT--HHH CS
      Globin   3 alvkaswekvkanaeelgaeilkrlFkaypdtkklFkkfgdlssaedlksspkfkahakkvlaalgeavknldndealkaalkklaarHaergkvdpan 101
                 a v+a+ + v+a+ ++++ ++++r+F+a+p++ +lF+  g+       +  ++ +a a++v+a+  ++v     d    + l+ +a++Ha+ g ++pa+
  KIR65918.1   8 AVVRATLPAVQAHGAAITGRFYQRMFAAHPELLDLFN-RGN-Q-----ATGAQQAALAAAVVAYAEHLVGLS--DVPWGPILDRIAHKHASLG-ITPAQ 96 
                 789**********************************.534.5.....899********************8..667****************.***** PP

                 HHHHHHHH CS
      Globin 102 Fklfgeal 109
                 + ++g +l
  KIR65918.1  97 YTIVGRHL 104
                 ***99887 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.7e-13   6.3e-10       1     108 [.     272     380 ..     272     381 .. 0.84

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1.7e-13
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTT.EEEEEEE.ESSCTTTSSSEESSHHH.HHHHHHHHHSSTTE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpg.rlkvvav.vsreeagweggkgrvqd.alleellslkkeet 93 
                    ++++G G++P +s l++++    ++++v+lv++ r    +++r+el +l  +lp+ r  +++   +  +   ++  +rv+  ++  el++   +++
     KIR65918.1 272 LVSAGIGLTPAMSALEHLAVT-APQRPVTLVHADRAGTAHALRDELPRLHHALPNlRTALWYEdPDGADGLLTELPVRVTPgRVDPELIP-LAADA 365
                    799*****************8.899******************************87777777444444455677777775144447777.699** PP

                    EEEEECSHHHHHHHH CS
  NAD_binding_1  94 hvyvCGppgMikavr 108
                    hv +CGp ++++ vr
     KIR65918.1 366 HVHLCGPLPFMNQVR 380
                    ***********9986 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   7.1e-12   2.5e-08       3      97 ..     159     261 ..     157     262 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 7.1e-12
                    EEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEEC..ETTCCEEEEEE.BSSTTECCEEEEEEE--......TT-HHHHHH.HCS-TT-EEE CS
  FAD_binding_6   3 kltekeevsedtrifrfklpsekqklglpvGqhvflrlk..ikgeaviRsYtpissenekGelellvkvy......pgGkmsqaL.delkigdtle 89 
                    +++e+ + + d+  f ++  +  ++ g+++Gq+v + ++    + + iR+Y+ +s      ++ + vk++      p+G +s  L d++++gdtl+
     KIR65918.1 159 RVVERIRETADVVSFGLAPADGGDVPGFVPGQYVSVAVDldGGRGQQIRQYS-LSGRPGAARWRITVKRVrgvagaPDGMVSTFLhDRVAVGDTLR 253
                    577888889999999999999999************99954446689*****.88888999************************999******** PP

                    EEEEE-SE CS
  FAD_binding_6  90 ikGPlGkf 97 
                    ++ P+G++
     KIR65918.1 254 LSPPFGEV 261
                    ******86 PP

>> Protoglobin  Protoglobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.9e-08   0.00021      14     106 ..       2      99 ..       1     120 [. 0.89

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5.9e-08
                  -SHHHHHHHHHHHHHHHHCHHHHHHHHHHHHC.TSHHHHHHHCH.....HCHHHHHHHHHHHHHHHCCCSSCCHHHHHHHHHHHHHHCHCT--HHHHH CS
  Protoglobin  14 lteedlaaLralapliealipavvdafYekll.sfpetarifet.....ssqierlkdflksyllklfsgpfdsayveyldkvGkmhtrlgleprwyi 105
                  lte+ +a++ra  p ++a+  a++ +fY+++   +pe+ + f++      +q + l +   +y + l  g +d  +   ld++++ h+ lg+ p +y 
   KIR65918.1   2 LTESSAAVVRATLPAVQAHGAAITGRFYQRMFaAHPELLDLFNRgnqatGAQQAALAAAVVAYAEHL-VGLSDVPWGPILDRIAHKHASLGITPAQYT 98 
                  899**************************986167**************888889999999999888.5789**********************9987 PP

                  H CS
  Protoglobin 106 a 106
                   
   KIR65918.1  99 I 99 
                  5 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.3e-05     0.083       4      27 ..     270     293 ..     269     317 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-05
                    xxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   4 vllvagGiGitpfisilkdllkks 27 
                    ++lv++GiG+tp++s l +l  + 
     KIR65918.1 270 LVLVSAGIGLTPAMSALEHLAVTA 293
                    89*****************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2799.94
//
Query:       KIR65919.1  [L=151]
Description: Rrf2 family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-17   61.9   0.6    9.3e-17   61.2   0.6    1.4  1  Rrf2            Transcriptional regulator
    1.5e-05   24.8   0.0    2.4e-05   24.1   0.0    1.3  1  TrmB            Sugar-specific transcriptional regulator TrmB
    3.3e-05   23.6   2.0    0.00016   21.4   0.5    2.4  2  HTH_IclR        IclR helix-turn-helix domain
    0.00014   21.7   1.0    0.00014   21.7   1.0    2.4  3  MarR_2          MarR family
    0.00052   19.5   0.1    0.00087   18.8   0.1    1.3  1  HTH_24          Winged helix-turn-helix DNA-binding
    0.00072   19.5   0.9      0.001   19.0   0.2    1.7  2  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0017   18.2   0.1     0.0029   17.5   0.1    1.3  1  HTH_11          HTH domain
     0.0031   17.6   0.1     0.0031   17.6   0.1    2.2  3  HTH_28          Helix-turn-helix domain
     0.0052   17.3   0.1      0.013   15.9   0.1    1.8  2  HTH_27          Winged helix DNA-binding domain
     0.0057   16.4   0.0     0.0085   15.8   0.0    1.3  1  DUF4423         Domain of unknown function (DUF4423)
     0.0098   16.0   4.1       0.01   15.9   0.4    2.4  2  DprA_WH         DprA winged helix domain
     0.0099   15.9   1.6     0.0099   15.9   1.6    2.1  2  HTH_20          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.017   13.9   0.2       0.02   13.6   0.2    1.1  1  EPSP_synthase   EPSP synthase (3-phosphoshikimate 1-carboxyvi
      0.024   14.4   0.7       0.06   13.2   0.7    1.7  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
      0.035   14.1   0.5      0.073   13.1   0.2    1.8  2  HTH_29          Winged helix-turn helix
      0.035   13.8   2.6      0.047   13.4   1.0    1.9  2  GntR            Bacterial regulatory proteins, gntR family
      0.052   13.5   0.0        0.1   12.6   0.0    1.4  1  MarR            MarR family
      0.075   12.9   0.9       0.21   11.4   0.1    2.0  2  HTH_23          Homeodomain-like domain
       0.13   12.5   0.0       0.18   12.0   0.0    1.3  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.18   10.7   0.0       0.24   10.3   0.0    1.2  1  MukE            MukE-like family
       0.21   11.4   0.0       0.38   10.6   0.0    1.4  1  IF2_N           Translation initiation factor IF-2, N-termina


Domain annotation for each model (and alignments):
>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.6   1.1e-19   9.3e-17       1      82 [.       1      80 [.       1      81 [. 0.96

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 1.1e-19
                X---HHHHHHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSHCCCSBHHHHHHH CS
        Rrf2  1 MklsskteyalhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLakppeeItlldvvra 82
                Mkl+++t++al++ +  a  + +   +++e+aer ++++s+++k++++L++ g++ ++rG++GG+++a+++ + t++ vvra
  KIR65919.1  1 MKLNRSTDMALRIAMLAAVTPAR--TTVDELAERLELPRSHVAKVVQRLQRLGVLVTIRGRSGGVAIAEAAGQLTVGAVVRA 80
                9************9888888886..6*******************************************************9 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   2.8e-08   2.4e-05      21      58 ..      22      59 ..      14      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 2.8e-08
                CCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 21 gpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                 + t+de+ae+l++prs v +v+++L + G+  +++gr
  KIR65919.1 22 ARTTVDELAERLELPRSHVAKVVQRLQRLGVLVTIRGR 59
                6789**************************98877765 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.5   1.9e-07   0.00016      13      49 ..      20      54 ..       8      56 .. 0.84
   2 ?    1.0   0.0      0.44   3.7e+02      11      27 ..      64      80 ..      63      82 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.9e-07
                CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR 13 aeapqeltlselArrtglpkStvhRlLqtLvelGyve 49
                + a+   t+ elA+r+ lp+S v   +q L++lG + 
  KIR65919.1 20 TPAR--TTVDELAERLELPRSHVAKVVQRLQRLGVLV 54
                3444..479*************************985 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.44
                T-CTTBSS-BHHHHHHH CS
    HTH_IclR 11 alaeapqeltlselArr 27
                a+aea++ lt+  + r+
  KIR65919.1 64 AIAEAAGQLTVGAVVRA 80
                7999******9999987 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   1.0   1.6e-07   0.00014      18      56 ..      20      58 ..      10      62 .. 0.83
   2 ?   -0.3   0.0       1.2   9.9e+02      17      30 ..      59      80 ..      52      84 .. 0.56
   3 ?   -2.5   0.0       5.8   4.9e+03       9      20 ..     133     144 ..     124     148 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.6e-07
                TTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 18 pgrdltvgelarrlglsksavsrilkrLvaaGLverrpg 56
                 + + tv ela+rl l++s v ++++rL++ G +++ +g
  KIR65919.1 20 TPARTTVDELAERLELPRSHVAKVVQRLQRLGVLVTIRG 58
                44467***************************9988765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.2
                TTTS........EEEHHHHHHH CS
      MarR_2 17 rpgr........dltvgelarr 30
                r g+         ltvg+++r+
  KIR65919.1 59 RSGGvaiaeaagQLTVGAVVRA 80
                5554444444445777777765 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 5.8
                 HHHHHHHCTTTS CS
      MarR_2   9 rvLaaLgrrpgr 20 
                  +L+ Lg rp +
  KIR65919.1 133 PLLLTLGPRPTP 144
                 578899998865 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1     1e-06   0.00087      16      47 ..      22      53 ..      22      54 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1e-06
      HTH_24 16 prisqreLAerlglSpstvnrrlkrLeeeGlI 47
                +r++  eLAerl l++s v + ++rL++ G++
  KIR65919.1 22 ARTTVDELAERLELPRSHVAKVVQRLQRLGVL 53
                699***************************96 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2   1.2e-06     0.001      21      55 ..      23      59 ..       7      70 .. 0.82
   2 ?   -2.5   0.0         6   5.1e+03      57      67 ..     115     125 ..     104     126 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.2e-06
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE..ETE CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglis..rgr 55
                + t +elA++l l r++v ++ ++L+r g++   rgr
  KIR65919.1 23 RTTVDELAERLELPRSHVAKVVQRLQRLGVLVtiRGR 59
                67889*************************9964444 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6
                 EEES-HHHHHH CS
   HTH_Crp_2  57 irildleaLra 67 
                 + +ld  +L++
  KIR65919.1 115 LAVLDETRLAD 125
                 45677777765 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   3.4e-06    0.0029      13      51 ..      20      61 ..      12      63 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.4e-06
      HTH_11 13 rgp.isgeeLAeeLnvSrrtvrrdIkaLeelg..vpIesepg 51
                ++   + +eLAe+L++ r+ v + +++L+ lg  v I +++g
  KIR65919.1 20 TPArTTVDELAERLELPRSHVAKVVQRLQRLGvlVTIRGRSG 61
                566689**************************6666666665 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   3.7e-06    0.0031      10      50 ..      20      59 ..      11      62 .. 0.81
   2 ?   -2.0   0.0       4.9   4.2e+03       6      22 ..      65      81 ..      63      82 .. 0.63
   3 ?   -1.9   0.0       4.5   3.8e+03      37      47 ..     119     129 ..     103     133 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.7e-06
      HTH_28 10 a.aGhsvreaArelgisrrtvyrWikryeegGiagLvprrrr 50
                  a  +v+e+A++l + r++v + ++r++  G+  Lv+ r+r
  KIR65919.1 20 TpARTTVDELAERLELPRSHVAKVVQRLQRLGV--LVTIRGR 59
                356679**************************9..9998887 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.9
      HTH_28  6 ikllaaGhsvreaArel 22
                i ++a + +v ++ r++
  KIR65919.1 65 IAEAAGQLTVGAVVRAF 81
                55555555888877776 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4.5
      HTH_28  37 eegGiagLvpr 47 
                 +e  +a+Lv+ 
  KIR65919.1 119 DETRLADLVDG 129
                 34455666665 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.6e-05     0.013       7      53 ..       9      58 ..       3      70 .. 0.78
   2 ?   -1.8   0.0       5.6   4.8e+03      26      48 ..     105     127 ..     102     130 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.6e-05
      HTH_27  7 lvLhlir...hrrrrkkladlcgrlnvedshisyslkkLtekGLvertgd 53
                + L+ ++    + +r +  +l++rl +  sh+++++ +L + G++++ + 
  KIR65919.1  9 MALRIAMlaaVTPARTTVDELAERLELPRSHVAKVVQRLQRLGVLVTIRG 58
                5555555554456778889**************************87665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5.6
      HTH_27  26 grlnvedshisyslkkLtekGLv 48 
                 g l + ++++  +l++   ++Lv
  KIR65919.1 105 GQLRRAQAAFLAVLDETRLADLV 127
                 55555555555555555555555 PP

>> DUF4423  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.9e-06    0.0085      22      69 ..       9      54 ..       5      73 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.9e-06
     DUF4423 22 yypvirellplkdfkadpeelakrlrpkisaeevekalefLlklgllk 69
                 ++ i  l+++ +++ +++ela+rl   ++ + v+k +++L++lg+l 
  KIR65919.1  9 MALRIAMLAAVTPARTTVDELAERLE--LPRSHVAKVVQRLQRLGVLV 54
                56789999******************..*****************996 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.4   1.2e-05      0.01      11      44 ..       9      42 ..       3      47 .. 0.86
   2 ?    0.9   0.2      0.59     5e+02      11      27 ..     128     144 ..     109     147 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-05
     DprA_WH 11 ddlerrvLaaLgpePvhvDqLvrrtglpaaevsa 44
                 +l+ + Laa+ p+ ++vD+L++r+ lp + v+ 
  KIR65919.1  9 MALRIAMLAAVTPARTTVDELAERLELPRSHVAK 42
                5789999********************9888875 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.59
     DprA_WH  11 ddlerrvLaaLgpePvh 27 
                 d++++ +L  Lgp P++
  KIR65919.1 128 DGPAGPLLLTLGPRPTP 144
                 78888999999999997 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.6   1.2e-05    0.0099      11      59 ..      11      58 ..       5      60 .. 0.91
   2 ?   -0.3   0.1       1.4   1.2e+03      23      23 ..     111     111 ..      65     130 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-05
                HHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECT CS
      HTH_20 11 vRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvre 59
                 R ++l+a  +++  t+ elaerl+l+++ + + ++ L++ g + + r 
  KIR65919.1 11 LRIAMLAAV-TPARTTVDELAERLELPRSHVAKVVQRLQRLGVLVTIRG 58
                69999****.******************************999887774 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.4
                 T CS
      HTH_20  23 e 23 
                 +
  KIR65919.1 111 Q 111
                 2 PP

>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   2.4e-05      0.02     302     373 ..       2      75 ..       1      82 [. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.4e-05
                    EEEBGSTTSBHGGGHHHHHHHHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEET..TEEEEEEEEE.EB-E CS
  EPSP_synthase 302 dietlpdeaptlavlaafaegttviegiaelrvketdrlaamateLrklGaeveeee..dgliiipaekqlkga 373
                    ++++ +d a+ +a+laa++  +t++++ ae  +    ++a +++ L++lG+ v+++    g++i +a+ ql  +
     KIR65919.1   2 KLNRSTDMALRIAMLAAVTPARTTVDELAERLELPRSHVAKVVQRLQRLGVLVTIRGrsGGVAIAEAAGQLTVG 75 
                    688999********************************************999887433677777766666543 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.7     7e-05      0.06      16      42 .]      22      48 ..      10      48 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7e-05
  HTH_AsnC-type 16 aRisyaeLAervGlSestvlrRvrrLe 42
                   aR+++ eLAer+ l +s v++ v+rL+
     KIR65919.1 22 ARTTVDELAERLELPRSHVAKVVQRLQ 48
                   8***********************996 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   8.6e-05     0.073      13      51 ..      24      61 ..      12      71 .. 0.78
   2 ?   -3.0   0.0       9.2   7.9e+03      39      51 ..     128     143 ..     120     146 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.6e-05
      HTH_29 13 stvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsg 51
                 tv ++A++l l r++v +++ r +  G+  +++  rsg
  KIR65919.1 24 TTVDELAERLELPRSHVAKVVQRLQRLGVLVTIR-GRSG 61
                499*************************855555.4555 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 9.2
      HTH_29  39 gGlaa..lld.rrrsg 51 
                 +G+a+  ll  ++r+ 
  KIR65919.1 128 DGPAGplLLTlGPRPT 143
                 4555555666666655 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.0   5.4e-05     0.047      26      61 ..      25      60 ..      22      63 .. 0.90
   2 ?   -1.5   0.0       2.4   2.1e+03       5      32 ..      99     125 ..      97     129 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.4e-05
                -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCE CS
        GntR 26 sereLaaefgVsrttvReALrrLeaeglverrqgrG 61
                ++ eLa++++  r+ v ++ +rL++ g+++  +gr+
  KIR65919.1 25 TVDELAERLELPRSHVAKVVQRLQRLGVLVTIRGRS 60
                578************************998888875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.4
                 HHHHHHHHHHTTSS-TTSB---HHHHHH CS
        GntR   5 vyerLredIlsgelrpGdkLPsereLaa 32 
                 v +rLr ++++ + +  + L  e  La+
  KIR65919.1  99 VDCRLRGQLRRAQAAFLAVL-DETRLAD 125
                 66788888888888888888.7877776 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00012       0.1      18      45 ..      24      51 ..      14      54 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
                EEHHHHHHHHTS-HHHHHHHHHHHHHTT CS
        MarR 18 lsvseLakklgvskstvtrvldrLekkG 45
                 +v eLa++l++ +s+v +v+ rL + G
  KIR65919.1 24 TTVDELAERLELPRSHVAKVVQRLQRLG 51
                5788********************9877 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00025      0.21       8      43 ..      11      49 ..       5      54 .. 0.81
   2 ?   -1.0   0.1         2   1.7e+03      17      27 ..     105     115 ..      97     121 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00025
      HTH_23  8 lrillllae...GlsvreIAreLgvsrrTvyrwlkryre 43
                lri+ l+a+   + +v e A++L  +r++v ++++r ++
  KIR65919.1 11 LRIAMLAAVtpaRTTVDELAERLELPRSHVAKVVQRLQR 49
                55666666566799**********************765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2
      HTH_23  17 GlsvreIAreL 27 
                 G+ +r+ A+ L
  KIR65919.1 105 GQLRRAQAAFL 115
                 55555555444 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00021      0.18      24      53 ..      25      54 ..       3      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00021
                    -HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 24 ktkdlaerLnvspssVsemlkkLekdGyve 53
                    ++ +laerL+   s V + +++L++ G ++
      KIR65919.1 25 TVDELAERLELPRSHVAKVVQRLQRLGVLV 54
                    6789*********************99665 PP

>> MukE  MukE-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00028      0.24     144     186 ..      38      82 ..       9      90 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00028
        MukE 144 ekvrtslrrlrrlGmvtaleedsekfrisesv..frfgadvrsgd 186
                  +v   ++rl+rlG+++++ + s+   i+e+   +  ga vr+ +
  KIR65919.1  38 SHVAKVVQRLQRLGVLVTIRGRSGGVAIAEAAgqLTVGAVVRAFE 82 
                 5678889**********************9973355688888644 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00045      0.38       2      33 ..      22      54 ..      21      57 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00045
       IF2_N  2 skirVyeLAkeLgvk...skevikkLfkelGievk 33
                + ++V eLA++L ++   +++v+++L + lG+  +
  KIR65919.1 22 ARTTVDELAERLELPrshVAKVVQRL-QRLGVL-V 54
                679**********7644478999999.779997.5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1132.96
//
Query:       KIR65920.1  [L=212]
Description: methyltransferase type 11 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-19   67.9   0.0    1.8e-18   67.0   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    7.6e-15   55.4   0.5    4.6e-14   52.9   0.0    2.0  2  Methyltransf_25  Methyltransferase domain
    4.5e-12   46.1   0.0    5.5e-12   45.8   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    5.5e-09   36.7   0.0    5.7e-08   33.4   0.0    2.1  2  Methyltransf_12  Methyltransferase domain
    2.2e-08   33.7   0.0    2.7e-08   33.4   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    7.1e-08   32.4   0.0    1.4e-07   31.4   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
    9.4e-05   22.4   0.0    0.00014   21.8   0.0    1.2  1  Methyltransf_8   Hypothetical methyltransferase
     0.0098   15.9   0.0      0.018   15.1   0.0    1.4  1  Methyltransf_17  S-adenosyl-L-methionine methyltransferase
  ------ inclusion threshold ------
      0.067   13.1   0.0      0.096   12.6   0.0    1.2  1  DUF412           Protein of unknown function, DUF412


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   9.1e-22   1.8e-18       2      94 ..      42     134 ..      41     136 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 9.1e-22
                      EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                      +vG+G+Gr ++++  ++a v++v++ ++++++a+++a ++++ v++  + a  lp++d+  D+vv s vl+ v+d+++al+e++RvL+pgG l
       KIR65920.1  42 EVGAGNGRAFAHYPPTVAAVLAVEPEPRLRRAARDAATTAPVPVTVAAGLADALPVADGHADAVVFSLVLCSVPDQAAALREAHRVLRPGGQL 134
                      89***************************************99999999******************************************98 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   2.3e-17   4.6e-14       1      97 []      40     132 ..      40     132 .. 0.94
   2 ?    0.5   0.2      0.52     1e+03       5      28 ..     166     186 ..     164     191 .. 0.79

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 2.3e-17
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      v+++G+G+Gr  ++    +  a v++v++ +++ +aar  a  + + v++  g a++lp +dg+ D+vv s  l ++s +d+++al+e++rvL+
       KIR65920.1  40 VVEVGAGNGRAFAHYPPTV--AAVLAVEPEPRLRRAARDAATTAPVPVTVAAGLADALPVADGHADAVVFS--LVLCSVPDQAAALREAHRVLR 129
                      89****************8..********************99999************************8..5556677999*********** PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       KIR65920.1 130 PGG 132
                      **9 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.52
                      T-TTSHHHHHHHCTSTSSEEEEEE CS
  Methyltransf_25   5 GcGtGrltlalakrlgkakvtgvD 28 
                      Gc tGr+t a+ ++     +t +D
       KIR65920.1 166 GCHTGRDTVAAIEAA---GFTLTD 186
                      9*******9999884...466666 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   2.8e-15   5.5e-12      21     123 ..      35     142 ..       9     186 .. 0.74

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 2.8e-15
  Methyltransf_23  21 raggrvLdiGcGtGillevlrengfsvtgvDlspeaveiaekakkaqkdqfdeq.....eaaepqgkfdlIvlrevlehvpdppellrqiatll 109
                         grv+++G+G G+   ++ + ++ v +v++ p++   a+ a +  ++++          ++ +g+ d +v + vl++vpd +++lr +++ l
       KIR65920.1  35 GLHGRVVEVGAGNGRAFAHYPPTVAAVLAVEPEPRLRRAARDAATTAPVPVTVAagladALPVADGHADAVVFSLVLCSVPDQAAALREAHRVL 128
                      4567******************************99999984444444444222222224445888**************************** PP

  Methyltransf_23 110 kpgGylllseplas 123
                      +pgG l + e+ + 
       KIR65920.1 129 RPGGQLRFFEHVRA 142
                      *****999888654 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   2.9e-11   5.7e-08       1      99 []      41     134 ..      41     134 .. 0.90
   2 ?    0.9   0.1      0.39   7.8e+02       4      30 ..     166     189 ..     164     195 .. 0.75

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 2.9e-11
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      +e+G+G+G+  ++  +    + +++v++ p+   +a++  a   +  +++    a+ l   dg  + D+vv s vl+ ++d +++l++++++L+
       KIR65920.1  41 VEVGAGNGRAFAHYPPT--VAAVLAVEPEPRLR-RAARDAATTAPVPVTVAAGLADALPVADG--HADAVVFSLVLCSVPDQAAALREAHRVLR 129
                      69***************..9************9.88888888888787777777777776666..***************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG+l
       KIR65920.1 130 PGGQL 134
                      ***97 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.39
  Methyltransf_12   4 GcGtGsllralleklpdieytgvDisp 30 
                      Gc tG+ + a  e+   + +t +D+++
       KIR65920.1 166 GCHTGRDTVAAIEA---AGFTLTDLHR 189
                      78888887777777...8888888865 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   1.4e-11   2.7e-08      90     160 ..      75     145 ..      39     163 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.4e-11
                      HHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE----SH CS
  Ubie_methyltran  90 kklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelp 160
                      + +  ++ + +    + a +Lp  d+  D v  s  l  v+D+  aL+ea+rvl+pGG+l  +e  + e p
       KIR65920.1  75 RDAATTAPVPVTVAAGLADALPVADGHADAVVFSLVLCSVPDQAAALREAHRVLRPGGQLRFFEHVRAERP 145
                      444455555778888999*********************************************99888765 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   7.2e-11   1.4e-07       6     138 ..      39     166 ..      37     181 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 7.2e-11
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeier 99 
                      rv+++G+G+G+          + a v  ++ +++ +++A   a+      v++ +g + +l+  ++d   D ++   vl+ ++d++++l+e++r
       KIR65920.1  39 RVVEVGAGNGRAFAHYP---PTVAAVLAVEPEPR-LRRAARDAATTAPVPVTVAAGLADALP--VADGHADAVVFSLVLCSVPDQAAALREAHR 126
                      57777777765433333...33456777777776.45555556666666899999999****..99**************************** PP

  Methyltransf_31 100 vlkpggilliedprllaelpakveeeskay..evvegakig 138
                      vl+pgg l   ++   ae p+ +++ +++   +++   ++g
       KIR65920.1 127 VLRPGGQLRFFEHV-RAERPGPLRRAQRLVdaTCWPLVCGG 166
                      ************99.89999999999987777776555544 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   6.9e-08   0.00014     114     157 ..      93     137 ..      77     145 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6.9e-08
                     TS-S--TT-EEEEEEES---.SS-HHHHHHHHHHHEEEEEEEEEE CS
  Methyltransf_8 114 akvPledesvdvavfclslm.gtnladflkeanrvlkvGGllkva 157
                       +P++d+ +d +vf l l  + + a  l+ea+rvl++GG l   
      KIR65920.1  93 DALPVADGHADAVVFSLVLCsVPDQAAALREAHRVLRPGGQLRFF 137
                     679***************973569999*************99765 PP

>> Methyltransf_17  S-adenosyl-L-methionine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.9e-06     0.018      23      46 ..      31      54 ..      12      61 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.9e-06
                     HHTTT--S-EEEE--TTSHHHHHH CS
  Methyltransf_17 23 aevadieGpvlelGLGnGRtydhl 46
                     ++ a+++G v+e+G GnGR + h 
       KIR65920.1 31 RTAAGLHGRVVEVGAGNGRAFAHY 54
                     567899****************95 PP

>> DUF412  Protein of unknown function, DUF412
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.8e-05     0.096       7      78 ..      47     118 ..      45     138 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.8e-05
      DUF412   7 dGqkYlktwPlekeLaalfpenrvikatrfaikvmpalavltlvlqlylagsealpqailtalfllsLPlQG 78 
                 +G+ +++  P+   + a+ pe r+ +a+r a ++ p+ +++++ l  +l   +  + a++++l+l+s+P Q+
  KIR65920.1  47 NGRAFAHYPPTVAAVLAVEPEPRLRRAARDAATTAPVPVTVAAGLADALPVADGHADAVVFSLVLCSVPDQA 118
                 5778888889999999999**************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1574.22
//
Query:       KIR65921.1  [L=418]
Description: hypothetical protein TK50_11610 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-07   30.3   2.2    7.7e-06   26.4   2.2    2.4  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
    0.00013   22.0   0.0      0.058   13.4   0.0    2.2  2  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   2.2   8.5e-10   7.7e-06       1     166 [.      40     292 ..      40     389 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 8.5e-10
                    EEESHHHHTCTTB..........................CCHCHHCCCCCCCHHHTT.-EEEEE.EEHCCH-H................HHHHHHH CS
  Lipase_GDSL_2   1 alGDSiTaGygad..........................gggrsypaylarllaarl.gldvvnnlgvsGatt..............allrllerl 55 
                    alGDS+  G ga                               + ++  a+l++a l g + + nl++sG  +              + +  l+  
     KIR65921.1  40 ALGDSFISGEGAGsyspvvdvngvsqgfpgwdapnsnayF---CHRSPNASLFQADLpGITDRFNLACSGGQPydiagasvnrakgrSVASQLD-- 130
                    79******9999999*******999998886665553321...222222334444446555666699999988788776555553332233333.. PP

                    HCTGGG-T.......SEEEEE--CCC..............CCTT--HHHHHHH........................................... CS
  Lipase_GDSL_2  56 rdllrlkp.......dlvtiliGtND..............lgrgvpaaaaaand.......................................... 88 
                        +l++       dlv++ +G N+                                                                      
     KIR65921.1 131 ----QLRAvarthdiDLVLVGLGSNNssftfgsvaekcanR------------Fiadawtgwwefwaylggpvpqepcsdadlatsaqfsaataet 210
                    ....33334456669***********775555444444440............15555666666666666666666666666*********99999 PP

                    ...HHHHHHHHCCC.....GEEECEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHHCT-EEE-HHHHHHHCCCCCGGBBT CS
  Lipase_GDSL_2  89 ..nleelidalraa..apgarilvlgplpptpeaaadarelnaviaaynealrevaaeegvpfvDlhdaladsgerladlla 166
                      ++++l+++l +    ++ r++   + +p p++ a++ + ++ +++ ++  r++ ae  ++ +++h+a  ++g r++++l+
     KIR65921.1 211 taAVRQLLATLDQVdaDGQHRVVFQDYTNPLPFDLASNYWEEDGREDDRDKFRDLGAERYAAGCPIHRASLAPGHRFSTGLG 292
                    99777777777777544555888899999999999999999*****************999999999888888888877765 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   6.4e-06     0.058       2      83 ..      39     159 ..      38     229 .. 0.76
   2 !    6.9   0.0   0.00062       5.6     163     200 .]     360     394 ..     298     394 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.4e-06
                  EEEESHHHH.....................TTTHHHHHHHCCCCEECCCTTC.................GCEEEEEEECTTHHHHHHHCCH..ECTTT CS
                  xxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxx..xxxxx RF
  Lipase_GDSL   2 vafGDSltd.....................Gdgaatlntiqlktpknlnefdl................aldrianignkgasdnelqqll..nkypl 60 
                  va+GDS++                      G+ a+++n++  ++ +n + f++                       + + gas+n  +++    +  +
   KIR65921.1  39 VALGDSFISgegagsyspvvdvngvsqgfpGWDAPNSNAYFCHRSPNASLFQAdlpgitdrfnlacsggQ-----PYDIAGASVNRAKGRSvaSQLDQ 131
                  89*******9988888888888888888888888888888888888888888888999999999655551.....44444444444444442222223 PP

                  ECHHHHHCTTSEEEEE--CTCC.....- CS
                  xxxxxxxxxxxxxxxxxxxxxx.....x RF
  Lipase_GDSL  61 kseqlkalhpdlviislGtNDs.....n 83 
                   + +++    dlv++ lG+N s      
   KIR65921.1 132 LRAVARTHDIDLVLVGLGSNNSsftfgS 159
                  35667777777*********99443331 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00062
                  EEEECHHHHHHHTHCCGCHCHTSSSB-HHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL 163 favvDlydelqglsgieqlkaDglHpsekgyeklaell 200
                  +    + +++ +  +++q   + +Hp+ +g+++l+++l
   KIR65921.1 360 IDIQRIANTCVSYFQTCQ---ESWHPNVAGHKALGRCL 394
                  444444444444444444...889**********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2813.47
//
Query:       KIR65922.1  [L=829]
Description: DNA topoisomerase IV subunit A [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.5e-141  472.2   0.0   1.7e-141  472.0   0.0    1.0  1  DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
      1e-14   53.7   0.5    9.3e-05   21.8   0.0    5.6  5  DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller
  ------ inclusion threshold ------
      0.051   13.9   0.6      0.096   13.0   0.6    1.4  1  Lzipper-MIP1   Leucine-zipper of ternary complex factor MIP1


Domain annotation for each model (and alignments):
>> DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  472.0   0.0  2.9e-145  1.7e-141       1     424 [.      47     488 ..      47     490 .. 0.97

  Alignments for each domain:
  == domain 1  score: 472.0 bits;  conditional E-value: 2.9e-145
  DNA_topoisoIV   1 RaiPsvrDGlKPvqRriLyamfkl.lnldkkekKvaqlvGevlgkYhPHGdaslydaivrlaqdfvgniplldpqGnfGsildgdkdAaaRYietr 95 
                    Ra+P++rDGlKPv+RriLy+m++  +++d+ ++K+a++vG+v+g YhPHGd+++yda+vrlaqdf++n+pl+d++GnfGs   +d +AaaRY+e+r
     KIR65922.1  47 RALPDARDGLKPVHRRILYSMHEAgHRPDRAHVKSARVVGDVMGRYHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSP--DDGPAAARYTEAR 140
                    9********************************************************************************..8999********* PP

  DNA_topoisoIV  96 LskiarellkeidketvdyqenyDgsekEPevlppiiPnlLvnGaeGIavGmatkipphnlkeiidaliallkgeea...ellelvlgPdfptggg 188
                    +s+ a  l+ e+ ++tvd ++nyDgs ++P+vlp+++PnlLvnGa+GIavGmat++ phnl+e+++a++ l+++++a   +l+e+v+gPd ptgg+
     KIR65922.1 141 MSHEAMLLVGELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHNLAEVVSAARWLINHPDAdldKLMEFVPGPDLPTGGV 236
                    ****************************************************************************99999*************** PP

  DNA_topoisoIV 189 iigkeeikeayetgrGkikvrakveie......e.ktivitElPigvntskliekieelv.kkkkik.isdirdesdr..gvrivielkrgaseek 273
                     +g +e+++ayetgrG +++r++vei       + ++i++ ElP+gv  +k+i  i++ v k+k+++ i+d++d +dr  g+r+vie+k g++++ 
     KIR65922.1 237 LLGLDEVRRAYETGRGVVRMRGRVEIGplegsrGrQAITVVELPYGVGAEKVIAAITNEVnKTKRLTgIADVKDLTDRenGTRLVIECKVGVNPQA 332
                    ************************9999****945***********************997888999********99889**************** PP

  DNA_topoisoIV 274 vleklykktkLessisvnnlvlfdkkpkylslkeilkeflevrlevyerrkeyllekleerleilegllkalnkidevievirkskkekkakkeLi 369
                     l +ly+ t Le+s+ vnnlvl+d++p++l+lk++l+ fl++r +v++rr+ y+ +k +erl++++gll+al +id+v+ +ir+s+++++ak+ L+
     KIR65922.1 333 LLADLYRLTPLEQSFGVNNLVLVDGQPQTLGLKALLEVFLRHRYDVVTRRSAYRRRKRQERLHLVDGLLIALLDIDKVVRLIRGSDDAQAAKDGLM 428
                    ************************************************************************************************ PP

  DNA_topoisoIV 370 ee..lseeqaeyllemrlrrLtkeeveklekeieelekeikelekllak...lkklikee 424
                    ++  ls+ qa y+l+ +lrrLtk+++ +le+e+e+l+kei++l+++l++   l+k++ +e
     KIR65922.1 429 RQfkLSDIQASYILDTPLRRLTKFDRIELEAEQEQLRKEIAQLSTILDDekvLRKVVSDE 488
                    **99*******************************************9966666666666 PP

>> DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0043        25       3      17 ..     576     590 ..     574     597 .. 0.89
   2 ?   -0.4   0.0      0.14   8.2e+02      33      47 ..     615     629 ..     603     630 .. 0.79
   3 ?    2.4   0.0     0.019   1.1e+02      33      44 ..     665     676 ..     663     679 .. 0.87
   4 !   21.8   0.0   1.5e-08   9.3e-05       3      44 ..     686     727 ..     684     731 .. 0.92
   5 !   17.3   0.0     4e-07    0.0024       5      42 ..     743     782 ..     740     785 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0043
                    EEEEETTSEEEEEEG CS
  DNA_gyraseA_C   3 llliTsnGyvkrfpl 17 
                    +ll+Ts+G+++++++
     KIR65922.1 576 VLLVTSAGRAFKIDV 590
                    8**********9976 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.14
                    SETTTTSSEEEEEEE CS
  DNA_gyraseA_C  33 iklkegdklvsvlvv 47 
                    + l++g+++v+++++
     KIR65922.1 615 VPLEPGESVVGLAPL 629
                    3899*******9875 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.019
                    SETTTTSSEEEE CS
  DNA_gyraseA_C  33 iklkegdklvsv 44 
                    i l+egd++v++
     KIR65922.1 665 IGLREGDEVVGA 676
                    78********98 PP

  == domain 4  score: 21.8 bits;  conditional E-value: 1.5e-08
                    EEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEE CS
  DNA_gyraseA_C   3 llliTsnGyvkrfplselpeqgRgakGvkgiklkegdklvsv 44 
                    l +++s    +rfp+s +++qg ++ G  gi+l  g ++v  
     KIR65922.1 686 LAFVSSEASLLRFPASAVRPQGTKGGGMAGINLPAGARVVFF 727
                    7799***********************************986 PP

  == domain 5  score: 17.3 bits;  conditional E-value: 4e-07
                    EEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTT..SSEE CS
  DNA_gyraseA_C   5 liTsnGyvkrfplselpeqgRgakGvkgiklkeg..dklv 42 
                    + +    vk +p   +p++gR++ Gv++ ++ +g  d +v
     KIR65922.1 743 VTSTGATVKVTPFGAYPAKGRATGGVRAQRFLKGetDLVV 782
                    6678889**********************99888566665 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.6   1.6e-05     0.096       4      37 ..     459     492 ..     456     515 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
  Lzipper-MIP1   4 ekrssLeqeveqLqerLqeeeklrraLekalsss 37 
                    ++ +L +e++qL + L++e+ lr++  + l++ 
    KIR65922.1 459 AEQEQLRKEIAQLSTILDDEKVLRKVVSDELAAV 492
                   57899*********************99999333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (829 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 5466.54
//
Query:       KIR65923.1  [L=440]
Description: nitrate reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-84  284.5  36.1    1.2e-84  284.3  36.1    1.0  1  Xan_ur_permease  Permease family


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.3  36.1   6.8e-89   1.2e-84       4     386 ..      42     403 ..      39     406 .. 0.95

  Alignments for each domain:
  == domain 1  score: 284.3 bits;  conditional E-value: 6.8e-89
                      HHHHHHHHHHHHHHHHHHHHTTTS-.........H.HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHH.HHHGGG-....HHHHHHHHHHHH CS
  Xan_ur_permease   4 lllglQhllamfaalvvvPllvgdalglaeelrqlisatllasGiatllqllifgirlpillgssfafvt.almialGsaedieialagllgal 96 
                      l  g+Qh++amf+a+ +vPl++g            +++tl++sG++tll+l+i+g rlp++lgssfaf++ +l   +G   di+ al+g+++a+
       KIR65923.1  42 LGIGVQHVVAMFGATFTVPLITGFP----------PATTLFFSGVGTLLFLVITGNRLPSYLGSSFAFIApVLAAKAGG--DIGPALGGIVVAG 123
                      5689********************9..........9**********************************855444454..8************ PP

                      HHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-..BTT.B---HHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHH CS
  Xan_ur_permease  97 lvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaavegltvvslkllllavvvllvilllsvflkglfsqlpiLig 190
                       + + + ++++l+g r ++  l+pPvvtg++v liGl+la++a ++ g g         ++    l+av +l++ill +v ++g+ ++l+iL+g
       KIR65923.1 124 AALAAVGLVVQLAGAR-WIDALMPPVVTGAIVALIGLNLAPVAWDGGGSGT--------GVKAQPLIAVFTLVAILLATVAFRGFAARLSILLG 208
                      ***************8.****************************988885........45556789*************************** PP

                      HHHHHHHHHHHHHTTSSHH..HHS-SS-----------HH..H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TIIIIIHHHHHHHHHHHHHH CS
  Xan_ur_permease 191 iiagwllalfmgivnlspe..vseapwfqlpsplkfgtplfnlgliltvlavalvavvesvGdiravakvvgrslkpkpdlrralladGlatll 282
                      ++agwl+a+++g ++ + +  +++a+w+ lp   +f +p+f+l++ ++v++v+lv+++e+ G+++ava ++gr+l+   d++ra+l+dGlat+l
       KIR65923.1 209 VVAGWLFAAALGGLDPKAVdgLRKAAWVGLP---EFHAPSFSLRATVLVIPVILVLIAENAGHVKAVAAMTGRNLD--RDMGRAFLGDGLATML 297
                      ************666665577*********9...9****************************************9..9*************** PP

                      HHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-..SHHHHHHHH CS
  Xan_ur_permease 283 sgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdld..sarnlliva 374
                      +g  G++++ttyaeniGv+a+t+v+s+    +ag+ ++llgl+pk++al+ ++P+ vlgG++++++g+ia+ g ++++++++d  +  nl+  a
       KIR65923.1 298 AGSGGGSGTTTYAENIGVMAATRVYSTAAYWMAGLAAVLLGLSPKFGALILTVPAGVLGGATTALYGLIAVLGARIWIENRVDfhDPVNLMTAA 391
                      ********************************************************************************999999******** PP

                      HHHHHHHH---- CS
  Xan_ur_permease 375 vslvlGlgvatv 386
                      v+l++G+   t+
       KIR65923.1 392 VALIVGAANYTL 403
                      ******987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3026.95
//
Query:       KIR65924.1  [L=210]
Description: DNA repair protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.8e-14   52.0   0.0    1.2e-13   51.7   0.0    1.2  1  2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   6.6e-18   1.2e-13      71     176 ..      85     195 ..      50     205 .. 0.83

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 6.6e-18
  2OG-FeII_Oxy_2  71 spfpeallrlverlvkaag.....pegwspnaalvnfYrdga.riglHqDke..esaleapivSlSLGasatfrfgkesreeeiiailLesGdll 157
                     +++p+ +l +++++  a +      ++ ++  +l   Yrdg+ ++++H D    ++ ++ +++ +S+Ga++ +++++ +   +  +++L +Gdl+
      KIR65924.1  85 RELPHPVLTRARAALTAHYapelgEPFVTAGMCL---YRDGRdSVAWHGDTLgrSAHTDTMVAIVSFGAPRPLLLRP-RGGGPGLRFPLGHGDLV 175
                     5556655555555554444566666777778888...*************99644499******************9.6888************* PP

  2OG-FeII_Oxy_2 158 vmggesrkay.Hgvprikkd 176
                     vmgg  ++++ H++p+  + 
      KIR65924.1 176 VMGGSCQRTWeHAIPKTARP 195
                     **************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 1311.33
//
Query:       KIR65925.1  [L=659]
Description: hypothetical protein TK50_11635 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.033   13.6   1.1      0.099   12.0   1.1    1.8  1  DUF1616   Protein of unknown function (DUF1616)


Domain annotation for each model (and alignments):
>> DUF1616  Protein of unknown function (DUF1616)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.1   5.5e-06     0.099      52     111 ..      70     128 ..      48     144 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.5e-06
     DUF1616  52 gieRlaLSfglSiaivpliglvlnvtpwgirlepilvslslftlllalvAivrRsrlpee 111
                  ++Rl+L+ +l    + ++gl+++  pwg++++p++ + +l +ll +++A+ rR rlp++
  KIR65925.1  70 LLDRLVLAGALLAGATCAAGLLFSAWPWGLHPVPVAGT-ALTVLLGIAAATGRRPRLPRP 128
                 567888888888889999****************9875.6777888899999*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 4852.99
//
Query:       KIR65926.1  [L=243]
Description: acylneuraminate cytidylyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-24   87.0   0.0    2.1e-24   86.7   0.0    1.1  1  CTP_transf_3  Cytidylyltransferase
    1.2e-07   32.3   9.1    5.5e-07   30.1   9.1    2.0  1  NTP_transf_3  MobA-like NTP transferase domain
  ------ inclusion threshold ------
       0.13   12.3   0.1       0.25   11.4   0.1    1.5  2  LolB          Outer membrane lipoprotein LolB


Domain annotation for each model (and alignments):
>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.0   3.5e-28   2.1e-24       2     177 ..       6     179 ..       5     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 3.5e-28
                   EEEEE-SSSSSSTTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES-HHHHHHHHHTT..SEEEE--TTCSSHHHHHHHHHHHHTTT.TTSEEEEE CS
  CTP_transf_3   2 aIipARsgSkRlpgKnlldlggkpliayvleaalkskafekvivaTDseeiknvakefg..asvlvtrsslesdterflevvkaflmseneeiivnl 96 
                    I++AR+gS+RlpgK+l++l+g+  + +v++aa + +++ +++vaT+ e  ++++++ +   +v + r++  ++++rf+ ++ a+  +     +++ 
    KIR65926.1   6 GIVQARMGSSRLPGKVLRPLAGRSVLGRVVRAAADGGVLADLVVATSTEAADDAVVAECarLGVACHRGPVDDVLDRFVGALDAHPGD----AVMRF 98 
                   7*******************************************************999999**************************....***** PP

                   -TT-TT--HHHHHHHHHHHHHSTTS.SEEEE...EEETTSHHHHTSTTSTEEEETTTSBEEEEESSESSEEHHHHHCTSTTTSEE CS
  CTP_transf_3  97 qGdnPllqeevikkaietlkenqed.ylstl...vkkvgkeeevlnandlkvllddagkalyfeesvipyireeplelsrrlyls 177
                   ++d Pll++e ++ +++ ++  +   y st      + g   e+ +a+ l +l++ a   +  + +v+ y++ +p  ++  +  +
    KIR65926.1  99 TADCPLLDPEIVRLVADVYRAVPGLdYASTSiarTLPRGLDVEIIRADTLRTLHRIA--TDHHRVHVTSYAYTHPELFR--VLGV 179
                   **********9999999998875444333331113466888****************..9999************9987..3333 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   9.1   9.2e-11   5.5e-07      11     115 ..      11     121 ..      10     240 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 9.2e-11
                   TTTT....THHHHCCCCCCHHHHHHHHHCTT.-.CEEEEECSH....CHHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHHHH.SSSCEEEEETT-TT CS
  NTP_transf_3  11 Rmgg....dKallplggkpllervldalraagv.devvvvggd....eevlaalarlgvrvvededpgkgplaslaaalraaadadavlvlacDmPl 98 
                   Rmg+     K l pl+g+++l rv++a+++ gv +++vv++      ++v a++arlgv + + +      l  +  al+a    dav+ +++D+Pl
    KIR65926.1  11 RMGSsrlpGKVLRPLAGRSVLGRVVRAAADGGVlADLVVATSTeaadDAVVAECARLGVACHRGP--VDDVLDRFVGALDAH-PGDAVMRFTADCPL 104
                   899766767**********************9769999998773333477778899999998887..5889999999**998.8************* PP

                   --HHHHHHHHHCHHHHT CS
  NTP_transf_3  99 ltpelverllaaaaasg 115
                   l+pe+v+ +++ ++a +
    KIR65926.1 105 LDPEIVRLVADVYRAVP 121
                   *******9999876444 PP

>> LolB  Outer membrane lipoprotein LolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.41   2.4e+03     101     150 ..     144     192 ..     134     194 .. 0.59
   2 ?   11.4   0.1   4.2e-05      0.25      49     102 ..     182     235 ..     170     243 .] 0.65

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.41
        LolB 101 eldeqgrlekleqdgwevrYqnyqdvegvplPkrlelereelqqrikLvi 150
                 + d  ++l+++  d+ +v+ ++y+  + ++l + l ++  +++  ++L++
  KIR65926.1 144 RADTLRTLHRIATDHHRVHVTSYAY-THPELFRVLGVTLTPDRSALRLTL 192
                 5566667888888888888888877.444444433333233334666655 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 4.2e-05
        LolB  49 dpegatledsdgqaytaadaeeLleellgwelPvsgLrqWvlglpapaaeelel 102
                 +p++  l+   ++++  a + +++ +   +++P+++L++W+ g+pa +a ++++
  KIR65926.1 182 TPDRSALRLTLDTEQDWALVRAVTDHFGDVSVPLAKLADWLAGQPALRALNASV 235
                 455544444444444444566777788889***************975544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1659.24
//
Query:       KIR65927.1  [L=636]
Description: hypothetical protein TK50_11650 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0093   15.8   0.0       0.02   14.7   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.022   15.4   0.0      0.064   13.9   0.0    1.8  1  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.3e-06      0.02      79     130 ..      97     154 ..      50     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.3e-06
  Methyltransf_23  79 pqgkfdlIvlrevlehvpdpp.......ellrqiatllkpgGylllseplaslkedrll 130
                       +++fd++++  +l  v++++        llr++a+ l+pgG lll+  + +   +r++
       KIR65927.1  97 ADETFDVVIAAAGLDAVESVEgtpvgwdGLLRRLAAVLAPGGTLLLRLDN-PVGLTRMV 154
                      3459**************9888889999******************9876.34455554 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   7.2e-06     0.064      45      95 ..      85     141 ..      67     142 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.2e-06
                      EEETTEECCCTSS-TT-EEEEEEES-CCC-C.......CHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  45 vefvvadaeklpfednsfDlvvssevlhhve.......dpekalkeiaRvLkpgGllv 95 
                      v++vv+    lp +d++fD+v++   l+ ve        ++ +l+ +a vL pgG+l+
       KIR65927.1  85 VRVVVGGPGGLP-ADETFDVVIAAAGLDAVEsvegtpvGWDGLLRRLAAVLAPGGTLL 141
                      566677777777.689*********88888545566779****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 3838.26
//
Query:       KIR65928.1  [L=280]
Description: hypothetical protein TK50_11655 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1911.11
//
Query:       KIR65929.1  [L=385]
Description: aminotransferase DegT [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.4e-113  378.6   0.0   3.9e-113  378.4   0.0    1.0  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
      8e-05   22.0   0.0    0.00019   20.7   0.0    1.6  1  Aminotran_1_2    Aminotransferase class I and II
    0.00078   18.1   0.1     0.0011   17.6   0.1    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
     0.0021   17.5   2.8     0.0029   17.1   2.8    1.3  1  PALP             Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.4   0.0  8.7e-117  3.9e-113       3     360 ..      13     372 ..      11     373 .. 0.96

  Alignments for each domain:
  == domain 1  score: 378.4 bits;  conditional E-value: 8.7e-117
                      HHHHHHHHHHHHTSS-SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTT CS
  DegT_DnrJ_EryC1   3 keeeleaveevlksgwltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdt 96 
                      +e++ +av +vl+s+wlt+gp+v++FE+++a  +g   + avs+GtaAlh+a+ a gvgpgdeV+vp++tF+ata++++ lga++vf+Dv+p+t
       KIR65929.1  13 TEDDVAAVVAVLRSDWLTTGPQVDAFEADLAGWTGGVGCAAVSNGTAALHVAYAAAGVGPGDEVVVPPMTFAATASTAVALGARVVFADVEPET 106
                      688999**************************************************************************************** PP

                      SSB-GGGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS-SSS-EEEEESTHHH CS
  DegT_DnrJ_EryC1  97 ynidpaaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnlttGeGGavvtndeel 190
                      y++dpaa+ aa+t rtk + +V+++G++ad dal+a+    g  ++ DaAh++Ga y+g++vG+l+d+++fSF+ptKnltt+eGGav   +++l
       KIR65929.1 107 YTLDPAAVGAALTARTKVVAAVDYAGHPADYDALRAVLGGGGPLLLADAAHSIGAAYHGRPVGSLADLTTFSFFPTKNLTTAEGGAVAAVSPAL 200
                      ********************************************************************************************** PP

                      HHHHHHHHBTTCEC.CTCSSCECCS.......S---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSSSEEES CS
  DegT_DnrJ_EryC1 191 aekarvlrnhGlkr.kaekryvgev.......elGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttpketkkhawh 276
                       e+ar++rnhGl+r +a +r+  e        e+G nyrl ++ +A+g++qL+rl +++arR e++++y+ +La+l+g++++    +++  awh
       KIR65929.1 201 LERARRFRNHGLVRdRAAQRWPDEGgwhqeihEFGLNYRLPDVLCALGRSQLRRLPRFLARRAELVARYDAALADLPGVSTPGRRSWAE-PAWH 293
                      **************55555555555999999***********************************************98888888887.8*** PP

                      CEEEEEHCCHHHCHHHHHHHHHHCCEE-B-SGSCHGGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHHHHHHHHHHH CS
  DegT_DnrJ_EryC1 277 lyavlveeeaevkrdelvealkeegigtrvhypnplhrqpvyaerkeeasgdlpnaerlaervlsLplypelteedvdrVveal 360
                      ly+++v+e+    r+++  a++++gig++v y +p+h +p++ae   + +g++p+ae ++++ lsLpl p+lt++d+drVv+al
       KIR65929.1 294 LYPIRVHEG---RRRAVYDAMRAAGIGVQVNY-VPVHWHPAFAELG-YRRGSCPVAEGFYAEQLSLPLFPDLTDADQDRVVDAL 372
                      *******99...99******************.8***********6.6689******************************997 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.2e-08   0.00019      47     154 ..      36     127 ..      22     221 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.2e-08
                    HHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTH CS
  Aminotran_1_2  47 peleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkea 142
                    +++e +la + g          +   v++G+ al +a +++  + pgde++vp  t+a     + + g+ vv   ++ +e+++ld  a+ +al+  
     KIR65929.1  36 DAFEADLAGWTG--------GVGCAAVSNGTAALHVAYAAAG-VGPGDEVVVPPMTFAATASTAVALGARVVFADVE-PETYTLDPAAVGAALTA- 120
                    566666666666........55567899**************.9*******************************66.9***************9. PP

                    HCTTETEEEEEE CS
  Aminotran_1_2 143 pegnkktkvilv 154
                         +tkv++ 
     KIR65929.1 121 -----RTKVVAA 127
                    .....9999864 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   2.5e-07    0.0011      51     141 ..      32     125 ..      29     128 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.5e-07
                      -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHH.TTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST......TSHHHHHHHCCTT CS
  Cys_Met_Meta_PP  51 nptrsvleeriaaLeggeaalavssGmaAiaaail.allkaGdeivvsddlYggtqrllkkvlkklgievkfvdt......sdleelekaiken 137
                       p ++++e+ +a   gg  + avs G+aA+++a   a +  Gde+vv    +  t +    +  ++     f d+       d++++ +a++ +
       KIR65929.1  32 GPQVDAFEADLAGWTGGVGCAAVSNGTAALHVAYAaAGVGPGDEVVVPPMTFAATASTAVALGARVV----FADVepetytLDPAAVGAALTAR 121
                      6999**************************88765156899*********99999887666655543....22221222336788888888888 PP

                      EEEE CS
  Cys_Met_Meta_PP 138 tklv 141
                      tk+v
       KIR65929.1 122 TKVV 125
                      8887 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   2.8   6.5e-07    0.0029      52     136 ..      40     133 ..      16     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.5e-07
                 T.....TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-EEEEE....CCHHHHHHHHHHHHHHHSTTCEE--TTT.S CS
        PALP  52 g.....tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGaevvev....ggdydeavaaaaelaaegegaylvsqfd.n 136
                 +     tg+ + ++ s+G +++ +A+aaa  G   ++vvp  + ++ +    +lGa+vv+     ++ + + +a+ a+l+a+ ++++ + ++  +
  KIR65929.1  40 AdlagwTGGVGCAAVSNGTAALHVAYAAAGVGPGDEVVVPPMTFAATASTAVALGARVVFAdvepETYTLDPAAVGAALTAR-TKVVAAVDYAgH 133
                 145567899999*************************************************887545466666668888888.888877777663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2527.53
//
Query:       KIR65930.1  [L=327]
Description: UDP-4-dehydro-6-deoxy-2-acetamido-D-glucose 4-reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-98  327.6   0.0    6.9e-98  327.4   0.0    1.0  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      5e-25   88.4   0.2      3e-24   85.8   0.2    1.9  1  Epimerase        NAD dependent epimerase/dehydratase family
    5.3e-16   58.5   0.0    1.6e-14   53.7   0.0    2.0  1  RmlD_sub_bind    RmlD substrate binding domain
    6.1e-16   58.7   0.0    1.1e-14   54.6   0.0    2.0  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    9.4e-15   54.3   0.0    1.9e-14   53.3   0.0    1.3  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    1.2e-12   48.1   0.2    1.6e-12   47.7   0.2    1.2  1  NAD_binding_10   NAD(P)H-binding
    1.7e-07   31.1   0.1    2.9e-07   30.3   0.1    1.4  1  NmrA             NmrA-like family
      2e-07   30.4   1.0    0.00017   20.8   0.9    3.0  2  NAD_binding_4    Male sterility protein
    3.5e-06   26.6   0.0    5.7e-06   25.9   0.0    1.3  1  adh_short        short chain dehydrogenase
    3.3e-05   23.9   0.0    6.2e-05   23.0   0.0    1.5  1  KR               KR domain


Domain annotation for each model (and alignments):
>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.4   0.0  3.8e-101   6.9e-98       1     293 [.       9     282 ..       9     283 .. 0.98

  Alignments for each domain:
  == domain 1  score: 327.4 bits;  conditional E-value: 3.8e-101
                      EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlv 93 
                      +l+tG++Gs+G++++r++l++ +p+++++++rdElk+ye++++l    ++ +l+ +    igd+rd++rl++a++  +vd v+haAAlK+V ++
       KIR65930.1   9 ILITGGTGSFGRTFLRHVLAEaDPARVVVFSRDELKQYELRQQL---GDDPRLRWF----IGDIRDRHRLTRAMH--GVDHVVHAAALKQVDTA 93 
                      89****************9988*********************9...578889888....***************..***************** PP

                      HHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGGSS--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETTGTTSSHHHHHHHHH CS
  Polysacc_synt_2  94 eenpleaiktNvlgtenvieaaieagvkkvvliStDKAvnPtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlgSrGSviplFkkqik 187
                      e+np e i tN++g+++v++aaieagvkkv+++StDKA +P+n++GatK++ +kl+++++++++++ t+f+vvR+GNV+gSrGSv+plF++  +
       KIR65930.1  94 EYNPSEFIATNITGSQHVVDAAIEAGVKKVIALSTDKASSPINLYGATKLVGDKLFVSANHYAAHHPTRFAVVRYGNVVGSRGSVVPLFRRLAA 187
                      ********************************************************************************************** PP

                      TTSSEEES-TT-EEEEE-HHHHHHHHHHHHHH--SS-EEEE--.-EEEHHHHHHHH..........SSSS-EEE----TT--SS-EEE-GGGGG CS
  Polysacc_synt_2 188 eggpvtvTdpemtRyfmtieeavqLvlqalalakggeifvldmGepvkivdlakalielsgleekkeedieikitGlRpGEklyEeLlieeesv 281
                      eg++++vTd++mtR+++t+++avq+v+ ++ +++gge+fv  + ++++i+dl++a+          ++d +++ +G+RpGEkl+Ee++  ++s+
       KIR65930.1 188 EGKSLPVTDKRMTRFWITLDQAVQFVMDSFDQMQGGELFVPRI-PSMRILDLVEAV----------APDATTHEIGIRPGEKLHEEMIAPDDSR 270
                      *******************************************.************..........6899************************ PP

                      GEEE-SSEEEE- CS
  Polysacc_synt_2 282 eetelekilrak 293
                      ++ ++++ ++++
       KIR65930.1 271 RTLRTPDRFIVQ 282
                      **9999988775 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.2   1.6e-27     3e-24       1     220 [.       9     211 ..       9     226 .. 0.85

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 1.6e-27
                 EEEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg..yevigldrlssasntarledl......elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfiekn 91 
                 il+tG+tG  G+ +++++l++    +v++++r+ + ++ +++++l      ++  +d++dr +l+r+++  ++d+v+h+Aa + v++   +p++fi +n
  KIR65930.1   9 ILITGGTGSFGRTFLRHVLAEAdpARVVVFSRD-ELKQYELRQQLgddprlRWFIGDIRDRHRLTRAMH--GVDHVVHAAALKQVDTAEYNPSEFIATN 104
                 8***************99999888789999988.445555555558999*******************9..9*************************** PP

                 THHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHH...HHHT-EEEEEEESEEESTTS-TTSTTSHHH CS
   Epimerase  92 lqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveaya...aqyglnaiilrlfnlyGprngegevsrvip 187
                 + g++++++aa +agvk+++ ls+     ++a+             p + Y+a+Kl g+kl  +++   a + +++ ++r+ n++G r       +v+p
  KIR65930.1 105 ITGSQHVVDAAIEAGVKKVIALST-----DKAS------------SPINLYGATKLVGDKLFVSANhyaAHHPTRFAVVRYGNVVGSR------GSVVP 180
                 ************************.....3333............478*************887551105556**************9......***** PP

                 HHHHHHHTTSSSEEEETTST-EEEEEEHHHHHH CS
   Epimerase 188 alirkilegkqevtllgdgtalRdflyveDvae 220
                  + r ++egk ++ +  d +  R ++  + +++
  KIR65930.1 181 LFRRLAAEGK-SLPVT-DKRMTRFWITLDQAVQ 211
                 **99999999.66664.5666677776665554 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   8.8e-18   1.6e-14       3     180 ..       9     199 ..       7     213 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 8.8e-18
                    EEEESTTSHHHHH.HHHHCTTTS.EEEEEE-TT....................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHH CS
  RmlD_sub_bind   3 ilvtGanGqlGse.Lakqlaeeg.levlaltre....................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaaya 76 
                    il+tG++G  G+  L++ lae++ + v+ ++r+                      d++d+++++++++    d vv+aAA ++vD aE ++ +  a
     KIR65930.1   9 ILITGGTGSFGRTfLRHVLAEADpARVVVFSRDelkqyelrqqlgddprlrwfIGDIRDRHRLTRAMHG--VDHVVHAAALKQVDTAEYNPSEFIA 102
                    9**********98355566665525667777779****************99999***********999..778********************** PP

                    HHTHHHHHHHHHHHHCT-E.EEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHH.......H-SSEEEEEE-SEESSSSS-HHHHHH CS
  RmlD_sub_bind  77 vnaeavealAeaaaavgal.LihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavla.......agkkalivRtswvygekgknfvktml 164
                     n ++++++ +aa ++g++ +i +StD               + sP+n+YG+tKl G +   +       +  ++++vR + v g++g + v  + 
     KIR65930.1 103 TNITGSQHVVDAAIEAGVKkVIALSTD--------------KASSPINLYGATKLVGDKLFVSanhyaahHPTRFAVVRYGNVVGSRG-SVVPLFR 183
                    *****************9549999*98..............3679*************987663544432334778888888888855.79999** PP

                    HHHHH-SEEEEESS-E CS
  RmlD_sub_bind 165 rlakereelkvvaDql 180
                    rla+e ++l v + ++
     KIR65930.1 184 RLAAEGKSLPVTDKRM 199
                    **********998776 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   6.2e-18   1.1e-14       1     131 [.      10     130 ..      10     263 .. 0.84

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 6.2e-18
                    EEETTTSHHHHHHHHHHHHC.T-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlek.gyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekP 95 
                    LiTG++G  G  ++++ l++ +   +++  r+++ + +  ++l +dp      +l+++ gD++D+++l+r+++ v  d v++ AA + Vd+   +P
     KIR65930.1  10 LITGGTGSFGRTFLRHVLAEaDPARVVVFSRDELKQYELRQQLGDDP------RLRWFIGDIRDRHRLTRAMHGV--DHVVHAAALKQVDTAEYNP 97 
                    9*********9888777766145555566777777777777777655......789****************998..9****************** PP

                    HHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGG CS
  GDP_Man_Dehyd  96 eytaevnvlGtlrLLeairalglekkvrfyqaStsE 131
                     +++ +n++G +++++a+ ++g++   +++  St+ 
     KIR65930.1  98 SEFIATNITGSQHVVDAAIEAGVK---KVIALSTDK 130
                    **********************96...677788874 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   1.1e-17   1.9e-14       1     119 [.      10     131 ..      10     146 .. 0.88

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1.1e-17
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkk...viegDvtdkdkleealegvdvvihlaslvdvag.kltedeimkvnvkG 95 
                 ++tGg+G  Gr+  ++++ + +   v v+  +e ++  e  ++++ +       gD++d ++l++a++gvd v+h a+l +v   +++  e+   n+ G
  KIR65930.1  10 LITGGTGSFGRTFLRHVLAEADPARVVVFSRDELKQY-ELRQQLGDDPrlrWFIGDIRDRHRLTRAMHGVDHVVHAAALKQVDTaEYNPSEFIATNITG 107
                 69****************9999899999987777666.555555555456699*****************************9879999********** PP

   3Beta_HSD  96 TrnvleacvkagvrvlvYtSsaev 119
                  + v++a+++agv++++  S+ ++
  KIR65930.1 108 SQHVVDAAIEAGVKKVIALSTDKA 131
                 *****************9999766 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.2     9e-16   1.6e-12       1     103 [.      13     133 ..      13     168 .. 0.79

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 9e-16
                     TTTSHHHHHHHHHHHHC-.T-EEEEEETTHHHC....HHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHH............. CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.ghevtalvRnpekl....aeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeeg............. 77 
                     G+tG+ Gr  +++ la+    +v+++ R++ k     ++l ++++l+ + gd+ d   l++a+ g+d Vv a++ ++ d+               
      KIR65930.1  13 GGTGSFGRTFLRHVLAEAdPARVVVFSRDELKQyelrQQLGDDPRLRWFIGDIRDRHRLTRAMHGVDHVVHAAALKQVDTAEynpsefiatnitg 107
                     9****************98889999999976662223456699************************9999996655532223455566667777 PP

                     HHHHHHHHHHCT--EEEEEEETTTTS CS
  NAD_binding_10  78 aknivdaakeagvkRfvlvsaigvgd 103
                      +++vdaa eagvk+++ +s+ ++  
      KIR65930.1 108 SQHVVDAAIEAGVKKVIALSTDKASS 133
                     ********************988875 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   1.6e-10   2.9e-07       1      98 [.       9     124 ..       9     135 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.6e-10
                 EEESSTTSHHHHHHHHHHHH..HT-EEEEEES-S..-SHHHHHHHHSTTEEE.ES-TT-HHHHHHHHTT-SEEEE---GG.............S-HHHH CS
        NmrA   1 IlviGaTGrqGksvvrallk..aghkvralvRdt..kselakslkeaGvelv.kgdlddkeslvealkgvdvvfsvtgfy.............skeied 81 
                 Il++G+TG+ G+ + r++l+  +  +v +  Rd+  + el ++l + +      gd+ d+  l +a++gvd v  + +++              ++i  
  KIR65930.1   9 ILITGGTGSFGRTFLRHVLAeaDPARVVVFSRDElkQYELRQQLGDDPRLRWfIGDIRDRHRLTRAMHGVDHVVHAAALKqvdtaeynpsefiATNITG 107
                 89****************99545566666668888888999*******88777*****99999999999999988888777888899998889999999 PP

                 HHHHHHHHHHHS-SEEE CS
        NmrA  82 gkklvdAakeaGvkhfi 98 
                  +++vdAa eaGvk++i
  KIR65930.1 108 SQHVVDAAIEAGVKKVI 124
                 **************998 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.9   9.7e-08   0.00017       1     136 [.      11     128 ..      11     135 .. 0.83
   2 !    5.7   0.0     0.004       7.2     167     212 ..     129     177 ..     125     214 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 9.7e-08
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--S CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsaA 96 
                    +TG+TG  G+ +l+  L + +  ++++  R +            l+++el ++l      r++   GD+ + +      +l + ++ vd+++h aA
     KIR65930.1  11 ITGGTGSFGRTFLRHVLAEADPARVVVFSRDE------------LKQYELRQQLG--DDPRLRWFIGDIRDRH------RLTRAMHGVDHVVHAAA 86 
                    8****************999877999988866............56677777774..789*********9765......899999*********** PP

                    S-S.ST...TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE CS
  NAD_binding_4  97 tvnfde...pykellrvNveGtrevlelakklkklkvllhvST 136
                      ++d    + +e++++N++G ++v++ a +   +  ++  ST
     KIR65930.1  87 LKQVDTaeyNPSEFIATNITGSQHVVDAAIEAGVK-KVIALST 128
                    9877654236678****************988877.8899999 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.004
                    EETTTCCCHHHHHHHHHHHHHHHHH...HHH---EEEEEE-EEE--SSS CS
  NAD_binding_4 167 aklkglpntYeqsKalaEklvrear...rrsglpvvivRpsiitgeskt 212
                    +k  +  n Y  +K +++kl  +a+    ++  ++++vR ++++g+  +
     KIR65930.1 129 DKASSPINLYGATKLVGDKLFVSANhyaAHHPTRFAVVRYGNVVGSRGS 177
                    566777899**********9755541114566678*********96544 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   3.2e-09   5.7e-06       3     179 ..       9     168 ..       7     175 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3.2e-09
                 EEEESTTSHHHHHHHHHHHHT..T-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   3 vlvtGassGIGraiakelake..GakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 +l+tG+++ +Gr + +++++e   a+vvv++r e k  e+ ++l+++  ++  + +D++dr+++ +++         +d +v+ A++ ++++++e++ +
  KIR65930.1   9 ILITGGTGSFGRTFLRHVLAEadPARVVVFSRDELKQYELRQQLGDD-PRLRWFIGDIRDRHRLTRAMHG-------VDHVVHAAAL-KQVDTAEYNPS 98 
                 89*************99886533699*******************95.8899999*******99988765.......5*********.45555566655 PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaP 179
                    + i++N+tg  +++ a+++a       +++  s   +   +     Y+A+K   ++l+ s+ +  a +  r  +v  
  KIR65930.1  99 ---EFIATNITGSQHVVDAAIEA----GVKKVIALSTDKA---SSPINLYGATKLVGDKLFVSANHYAAHHPTRFAVVRY 168
                 ...5699******9999999998....3345666655554...5666789999998888888888877777666666655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.5e-08   6.2e-05       2      93 ..       8      89 ..       7     128 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 3.5e-08
                EEEEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------ CS
          KR  2 tylitGGlGgLGlelarwlaekg.arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr 93
                + litGG+G++G+++ r+ ++++  +++v++sR+    e ++ ++++    + + +++  D+ d++ ++++++ ++        v+haA + +
  KIR65930.1  8 SILITGGTGSFGRTFLRHVLAEAdPARVVVFSRD----ELKQYELRQQLGDDPRLRWFIGDIRDRHRLTRAMHGVD-------HVVHAAALKQ 89
                679*************9988777699********....3334345555555889*************999998876.......7788776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 2126.56
//
Query:       KIR65931.1  [L=349]
Description: N-acetylneuraminate synthase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-80  267.5   0.0    1.2e-79  267.2   0.0    1.0  1  NeuB             NeuB family
    9.9e-08   32.5   0.1    1.9e-07   31.6   0.1    1.5  1  SAF              SAF domain
  ------ inclusion threshold ------
       0.16   12.1   0.0       0.24   11.6   0.0    1.5  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> NeuB  NeuB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.2   0.0     2e-83   1.2e-79       1     238 [.      37     276 ..      37     278 .. 0.98

  Alignments for each domain:
  == domain 1  score: 267.2 bits;  conditional E-value: 2e-83
                 HHHHHHHHT-SEEEEEE--HHHH--GGGGG--.........TT-S-HHHHHHHH---HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-S-EEE- CS
        NeuB   1 lieaAaeagadavKfQtfkaeelvskeakkaeyqkkek...ekeesqlellkklelseeehkelkeyceekgieflstpfdlesvdlleslgveayKia 96 
                 +++a a++ga+a K+Qt+++++l+ + +++ e+ ++     +++e +++l++++++++e+h  ++e+++++g++++s+pfd+++v+lle+l+ +ayKia
  KIR65931.1  37 IVDAVAASGAHALKLQTYTPDTLTID-VDAPEFRISGGhelWGGERLYQLFERAHTPYEWHGPIFERARRHGLTVFSSPFDATAVELLEELDAPAYKIA 134
                 5899999*******************.8899**99987889********************************************************** PP

                 GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHH.HHHT--EEEEE----SS--GGG--THHHHHHHHH-TSEEEEE--SSSSHHHHHHHHHT- CS
        NeuB  97 SgeltnlpllekiaktgkpvilStGmatleeieeavevlreagaeklvllhCtseYPapledvnLkaietlkeafgvpvGySDHtlgiavaiaAvalGA 195
                 S el++lpl++ +a+tgkp+++StGmat++ei++av+++re ga  +vll Ct++YPap +d nL+ ++ l+++fgvpvG SDHt gi v++aAvalGA
  KIR65931.1 135 SSELVDLPLIRLVAATGKPMVISTGMATVGEIDAAVTAAREGGAGGIVLLACTASYPAPPQDSNLRRLPVLADTFGVPVGISDHTPGIGVPVAAVALGA 233
                 *************************************************************************************************** PP

                 -EEEEEB-S-TT--STTGGG-B-HHHHHHHHHHHHHHHHHSS- CS
        NeuB 196 kviEkHftldrnlegpDhkaSlepeelkelveairnvekalge 238
                 ++iEkH+tl r+  g D+ +Slep+el++l  + +++++alg 
  KIR65931.1 234 CLIEKHVTLRRADGGVDSDFSLEPTELADLRVESERAWAALGV 276
                 ****************************************995 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1   3.2e-11   1.9e-07       2      60 ..     293     347 ..     292     349 .] 0.94

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 3.2e-11
                 EEEEESSTB-TT-BEBTTTEEEECECGGCCTSCCCGGHHHHTTEEESS-B-TT-B-BGG CS
         SAF   2 nVvvAardikaGeviteddltlkrpiashkigllpiaygeviGkratrdikaGepvhah 60 
                 +++++++d++aGe +t d+++ +rp      gl+p ++++v+G++ +rd+++G+ + ++
  KIR65931.1 293 RSLYVVADVRAGEPVTRDNVRSIRPA----GGLPPADLDRVLGRTFRRDVPRGTALGWD 347
                 799**********************5....************************99887 PP

>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     4e-05      0.24     103     163 ..     142     202 ..      30     215 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4e-05
  Isochorismatase 103 dldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrl 163
                      +l  +++++g   ++ +G+at   ++a +++a++ G   +v+  ++a++ +  +d  l+rl
       KIR65931.1 142 PLIRLVAATGKPMVISTGMATVGEIDAAVTAAREGGAGGIVLLACTASYPAPPQDSNLRRL 202
                      66777888888899*******************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2404.90
//
Query:       KIR65932.1  [L=440]
Description: hypothetical protein TK50_11685 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-21   78.0   0.0    1.8e-21   77.3   0.0    1.3  1  PS_pyruv_trans  Polysaccharide pyruvyl transferase


Domain annotation for each model (and alignments):
>> PS_pyruv_trans  Polysaccharide pyruvyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   9.9e-26   1.8e-21       1     286 []      31     303 ..      31     303 .. 0.80

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 9.9e-26
                     -HHHHHHHHHHHHHHHHTT-EEEEEESSTTT--HHHHHHHHHTS-GGGEE................EEE--E....EEEETT-HHHHHHHHHHHH CS
  PS_pyruv_trans   1 NyGDelilealvklLrelgpdaeiivltpdpsetkkllkvktpilkklskvllkrlrkkdiddaddviivGgdgtlgndgdlsrlpdalrllfla 95 
                     N+G++++++a+ klLr    +++   ++ +p+e+++                            d +++  +  + + + ++    +  +  +l 
      KIR65932.1  31 NAGNLVFSHAAHKLLRTSTAEVTSSEFRVNPREADEINERF-----------------------DVFVVPLA--NAFRRSYAH---RLVAMTRLI 97 
                     77888888888888887777777777777777777776655.......................33777777..223333333...45999999* PP

                     HS-SSEEEE-SEEE............-S-HHHHHHHHHHHHHTTEEEESSHHHHH.HHHHHHTT-EEE---GGGGG---HHHHHHS--------- CS
  PS_pyruv_trans  96 kkagkpviilgqgi..........GpflnealrkllkkilakadlisvRdelSaelleslglkrnveltpDpaflleqlapseiletdkrkylrv 180
                     +++++pv+++g+g+            ++++a++ ++  +l +++ i+vR+e++  +l++lg++  v + ++p ++l+ +  ++++    +  l v
      KIR65932.1  98 ERLKIPVVVFGVGAqtnvdadreyLRPIDDAVKAFVSAVLDRSHTIGVRGEITEGYLRTLGFS-AVDVIGCPSMFLHGDSLRVDK---RKTTLTV 188
                     **************99999999966699***********************************.*************99999999...5666666 PP

                     ----SS--EE---SSS---HH........................................HH-TTS-HHHHHHHHHHHHHHHHHTSSEEEE--H CS
  PS_pyruv_trans 181 akssekdledleellakvydlllekgarllllpivkkdglelddlyllllra.........aakkekvtildrfaspeellsliaradfvitsRl 266
                     +++ + ++  + +++akv+     ++ +l  lp   k    l    + ++r           +     + +  f +p+ ++++++r+df  ++R 
      KIR65932.1 189 EDRVALTVSPYVKSMAKVIASHHRRYPNLRYLPQDLKTLGTLLFGDAPEDRGkkaaipihtSHPLFTEDKVRMFVDPWTWMDYLSRFDFNFGTRI 283
                     6666666666677777777776666666666555555555555555555555777788888888889999999********************** PP

                     HHHHHHHHHT--EEEE--SS CS
  PS_pyruv_trans 267 HglifalsfgvPvigisyds 286
                     Hg+i al +g+P   +++ds
      KIR65932.1 284 HGTITALVAGTPGYLFAHDS 303
                     *****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2997.80
//
Query:       KIR65933.1  [L=142]
Description: hypothetical protein TK50_11695 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1039.22
//
Query:       KIR65934.1  [L=255]
Description: hypothetical protein TK50_11700 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0052   16.5   8.3     0.0052   16.5   8.3    2.2  2  GARP          Glutamic acid/alanine-rich protein of Trypanoso
  ------ inclusion threshold ------
      0.094   12.8   0.0       0.26   11.3   0.0    1.8  1  Sigma70_r1_2  Sigma-70 factor, region 1.2
       0.22   11.1   0.1       0.36   10.4   0.1    1.2  1  M64_N         Peptidase M64 N-terminus


Domain annotation for each model (and alignments):
>> GARP  Glutamic acid/alanine-rich protein of Trypanosoma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   8.3   8.7e-07    0.0052      20      89 ..      44     113 ..      34     122 .. 0.86
   2 ?   -0.3  14.6      0.12   7.3e+02      45      85 ..     194     229 ..     172     238 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.7e-07
        GARP  20 tvssleeeaaaaaskaskAkarseeaverAesaaendteakelvkrakeaaaeateAaeaAetaaseveg 89 
                 +v+  +  aa  a  a++ ++ +ee +  A+ aa+n +   ++ + a++aa++a +A+++Aetaa+++++
  KIR65934.1  44 AVEPPVRPAAPPAPAAADLRRYAEEVAVAAAGAAQNARRRRAAWTAAQDAAERAWQAYDEAETAARRFRD 113
                 566666667777778999999999999999999********************************99876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.12
        GARP  45 averAesaaendteakelvkrakeaaaeateAaeaAetaas 85 
                 a    e+aa++  +a+ +++ a++ aaea++Aae+A  a+ 
  KIR65934.1 194 AR---ERAAWG--DAELAAEAARALAAEAYAAAERARPAHA 229
                 22...234455..78999******************98775 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.4e-05      0.26      14      32 ..     166     185 ..     166     187 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.4e-05
                   X--TH.HHHHHHHHHHHCCH CS
  Sigma70_r1_2  14 PLLta.eEEveLAkrieaGd 32 
                   P L++ e+Ev LA+ +++G 
    KIR65934.1 166 PRLHPvEQEVVLARAVRDGR 185
                   567788*************7 PP

>> M64_N  Peptidase M64 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1     6e-05      0.36      78     103 ..      98     123 ..      89     131 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6e-05
                 HTTSGGGGT--EEEEEEEEEEEESS- CS
       M64_N  78 wqtteeakkvkksfensflvPfPkkk 103
                 wq+++ea+++++ f+++  +P+P+++
  KIR65934.1  98 WQAYDEAETAARRFRDAGALPTPHTP 123
                 ***********************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1131  (0.0630822); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1843.52
//
Query:       KIR65935.1  [L=290]
Description: hypothetical protein TK50_11705 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-18   66.8   0.0    4.5e-18   66.2   0.0    1.3  1  Peptidase_C39_2  Peptidase_C39 like family
    5.1e-05   22.6   0.1    0.00084   18.6   0.1    2.1  1  Phytochelatin    Phytochelatin synthase
  ------ inclusion threshold ------
      0.088   13.1   0.2       0.38   11.0   0.1    2.1  2  BtrH_N           Butirosin biosynthesis protein H, N-terminal
        0.1   13.4   2.6       0.13   13.1   2.6    1.2  1  PRCC             Mitotic checkpoint regulator, MAD2B-interact
       0.35   11.5  10.9      0.046   14.3   6.8    1.6  2  HoxA13_N         Hox protein A13 N terminal


Domain annotation for each model (and alignments):
>> Peptidase_C39_2  Peptidase_C39 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   1.3e-21   4.5e-18       1     144 []     127     265 ..     127     265 .. 0.86

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 1.3e-21
  Peptidase_C39_2   1 ldvplynQldelpngCeptslamvlsylgkkvtqnelakelktns...sgdpntgfvgnitdksglgvynepivklaekyglkvsdtrgssiee 91 
                      ld+ +++Q   + ++C+p++++++ls  g + tq++la  l+t++   +++       ++t   +  v  ep+ +     g++    +++  ++
       KIR65935.1 127 LDYDYEAQ--STYYYCGPAAVRNALSATGVDGTQDDLAARLGTTEmgtNSAY------DTTRVLNEMVKGEPYRTRLIPGGAATPAETERLRAD 212
                      68899***..9*********************************94443333......444334456777888887777777788889999*** PP

  Peptidase_C39_2  92 vkkeidagkPvvvsvtt.fkplndgeikftssgHlvvitGYdekgkrvyvnDPa 144
                      v+k+++ag+ vvv+++  ++++ dg ++++++gH+++++GY ++g++v ++D+a
       KIR65935.1 213 VVKAVSAGRGVVVNIAGdATDV-DGGWHSFPGGHYIAVVGYRDSGRTVRIADSA 265
                      ***************9988888.899**************************86 PP

>> Phytochelatin  Phytochelatin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   2.3e-07   0.00084      39     194 ..     129     280 ..     124     287 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.3e-07
                    HH----SSCCGHHHHHHHHHHHHHT-----TTTTT-----TTTCCGSHS-HHHHHHH---HHHHHHHHHTTT-EEEEEEG...GGS-HHHHHHHHH CS
  Phytochelatin  39 eqfetqsepayCGlaslvmvLnaLevdpkrkwkgpwrwfteellldcciklekvkkeGitleelaelakcnglkvevvra...selsleefrklvk 131
                      +e+qs+  yCG+a++ ++L a +vd +++     r  t e+ ++  +++++          l+e++k ++ +++++     + ++ e++r +v 
     KIR65935.1 129 YDYEAQSTYYYCGPAAVRNALSATGVD-GTQDDLAARLGTTEMGTNSAYDTTR---------VLNEMVKGEPYRTRLIPGgaaTPAETERLRADVV 214
                    57999**********************.6677778888888888666665444.........4567777777777777664445678889999999 PP

                    HHCTSTT..EEEEEEEEGGGGTSSS......SEEEEEEEEEETTTTEEEE--S-TTT---EEEEHHHHH CS
  Phytochelatin 132 evlkseeedkfvvvnysRkalgqtg......eGHfSPigaYdeesdsvLiLDvarfkYppvWvkleeLy 194
                    ++++     + vvvn    a + +g      +GH+  + +Y ++   v i D a    p +W++++ L 
     KIR65935.1 215 KAVSAG---RGVVVNIAGDATDVDGgwhsfpGGHYIAVVGYRDSGRTVRIADSADPAVPAYWISTAALA 280
                    999884...68999999999988774455556*********************************9985 PP

>> BtrH_N  Butirosin biosynthesis protein H, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.93   3.3e+03       2      27 ..     140     166 ..     139     169 .. 0.80
   2 ?   11.0   0.1   0.00011      0.38      75     133 ..     206     263 ..     200     264 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.93
      BtrH_N   2 Cesgaladllahagle.lsEplvFglG 27 
                 C+ +a++++l++ g++  ++ l+  lG
  KIR65935.1 140 CGPAAVRNALSATGVDgTQDDLAARLG 166
                 889999*****9999966777766665 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00011
      BtrH_N  75 peeawkalkeeLdaGrpvivqvdvyyLpYlpkesrlhfnaHnvvvyGyddeegealvsD 133
                 +e++ +++ +++ aGr v+v +     +     +++  ++H+++v+Gy+d ++++ ++D
  KIR65935.1 206 TERLRADVVKAVSAGRGVVVNIAGDATDVDGGWHSFP-GGHYIAVVGYRDSGRTVRIAD 263
                 5666666666666666666644333343334335565.89*****************99 PP

>> PRCC  Mitotic checkpoint regulator, MAD2B-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   2.6   3.6e-05      0.13      31     100 ..      73     159 ..      42     218 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.6e-05
        PRCC  31 sapeaeeseeedppetepepasqpeaenadleakkaakssea..mvpepteqdp.vkensknypgyyllpsg..............s 100
                  a+   +++ ++p   +p+p+ +++a+n+dl+a+ ++k+++a    p+p  +++ + +++++ + yy+ p +               
  KIR65935.1  73 RAQARIAAPLAAPSSAAPSPSATSAAPNPDLTASATPKKTTAkpAAPKPPSSKVlDYDYEAQSTYYYCGPAAvrnalsatgvdgtqD 159
                 33334445567778889999999999********99999999654444444444899999999999999988665555444444440 PP

>> HoxA13_N  Hox protein A13 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.8   1.4e+04      59      71 ..      48      60 ..      20      61 .. 0.69
   2 ?   14.3   6.8   1.3e-05     0.046      13      83 ..      70     140 ..      65     159 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.8
    HoxA13_N 59 pcsavqssssasl 71
                 ++a+q +++a++
  KIR65935.1 48 DAPAPQRTTNAAV 60
                3567777777765 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.3e-05
    HoxA13_N  13 aasqcrnllahsalgahpsslaasssvyssvdvsesasaepgkqcspcsavqssssaslpygyf.GngYYpC 83 
                 aas+++  +a  +l+a +s++ ++s++ ++ +   +asa p k ++ ++a++ +ss  l y y   ++YY C
  KIR65935.1  70 AASRAQARIAA-PLAAPSSAAPSPSATSAAPNPDLTASATPKKTTAKPAAPKPPSSKVLDYDYEaQSTYYYC 140
                 66666666773.66666665555544444444444555666688877888899999********999***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2429.69
//
Query:       KIR65936.1  [L=566]
Description: CDP-glycerol glycerophosphotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-07   28.5   0.0    1.6e-06   27.4   0.0    1.5  1  Glyphos_transf  CDP-Glycerol:Poly(glycerophosphate) glyceroph
  ------ inclusion threshold ------
       0.96    9.7   9.0        6.1    7.1   9.0    2.0  1  EI24            Etoposide-induced protein 2.4 (EI24)


Domain annotation for each model (and alignments):
>> Glyphos_transf  CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.8e-10   1.6e-06     194     289 ..     356     468 ..     335     473 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.8e-10
                     EEEEE----GGG--GSS----TT-HHHHHHHHTTTEEEEE--SHHHHTT---...TT-TTTEEE-TT-S.................-HHHHHHT- CS
  Glyphos_transf 194 vilyaPTwRddevgesyrfelkldlerlakalgedyvillklHpliqekiki...keksdyvvdvsdee.................dvedlllas 268
                      +ly+PTw + ++  + +  l + +  ++  l   ++++l++Hp+  ++ +           +++++++                 ++ d ++ s
      KIR65936.1 356 TVLYTPTWTGHHAD-ANYCSLPVGETIVRGLLARGATVILRAHPYTGQNPASarqL--ARLTELLAADRartgrqhvfgaaasrelSLVDCVNRS 447
                     69***********9.78899999999999******************999886441..222222222224577888888888888899999**** PP

                     SEEEESS-THHHHHGGGT--E CS
  Glyphos_transf 269 DiLiTDYSSvmFDyavldrPi 289
                     D+L++D S v+ Dy++  +P 
      KIR65936.1 448 DALVSDVSGVISDYLYSGKPY 468
                     *******************96 PP

>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   9.0   0.00068       6.1      22      71 ..      83     165 ..       4     216 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00068
                 HHHHHHHHHHHHHHHHH....................-.............TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EI24  22 plllnlllfllllvlll....................w.............vllasllvllllllplwlfplvalllaapfyg 71 
                 p l + +l+ll+lvll+                    w             vlla++++ ++l+lp+w+  lval+++a    
  KIR65936.1  83 PALAATALVLLGLVLLVgplrqagdleiraanlpvrsWtpliaarlgdallVLLAVVALAAALVLPAWVALLVALAVGAGAGA 165
                 4455555555555555579999999999999988888688888889999999999******************9999886533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4084.82
//
Query:       KIR65937.1  [L=499]
Description: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-49  167.2   0.9    7.6e-49  166.4   0.9    1.3  1  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly
    3.6e-33  114.7   0.1    1.1e-30  106.6   0.1    2.3  1  adh_short        short chain dehydrogenase
      1e-28  100.5   0.1    4.2e-28   98.5   0.1    1.7  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    8.9e-12   45.7   0.5    2.5e-11   44.2   0.2    2.0  2  NTP_transf_3     MobA-like NTP transferase domain
    9.2e-08   32.2   0.3    1.8e-06   28.0   0.1    2.3  2  KR               KR domain
      3e-05   23.7   0.0    6.9e-05   22.5   0.0    1.6  2  NTP_transferase  Nucleotidyl transferase
    0.00048   19.3   0.1    0.00076   18.7   0.1    1.3  1  RmlD_sub_bind    RmlD substrate binding domain
  ------ inclusion threshold ------
      0.041   13.3   0.2       0.14   11.6   0.2    1.8  1  Epimerase        NAD dependent epimerase/dehydratase family
      0.066   13.1   0.0       0.11   12.4   0.0    1.4  1  CTP_transf_3     Cytidylyltransferase
      0.098   12.0   0.0       0.28   10.5   0.0    1.7  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
       0.25    9.9   0.0       0.41    9.2   0.0    1.2  1  UDPGP            UTP--glucose-1-phosphate uridylyltransferase


Domain annotation for each model (and alignments):
>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   0.9   4.6e-52   7.6e-49       2     217 ..      25     246 ..      24     249 .. 0.95

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 4.6e-52
                 EEEEECTTSSCTT-SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGGHHHHHHHHGG....CCEEEEE--SSHHHHHHHHHHTTSSTTSEEE CS
        IspD   2 vvvipAAGsGkRmkaglpKqflelkgqtllehtvdallaskavdkivvvvseddteefeqllld....ksiqlvaGGdeRaesVlnglkalegeakfVL 96 
                 v+v+ A G+G+R++ g pKq+l+++g++++eht++++ a +++d+i+v++ + +++ ++q+  +    k  +++aGGd+R+ +   +l+a+ + +  +L
  KIR65937.1  25 VAVVLAGGTGTRLGLGIPKQLLKIAGKPIIEHTLAVFEAAPEIDEIIVLMADGHVPDAQQIVDKagfrKVSKVIAGGDTRNATTRIALDAVGEGDVNIL 123
                 689***********************************************************9999955558*************************** PP

                 E--TT-TT--HHHHHHHHHHHHTTCSEEEEEEE-SSEEEEEETTTBEEEEETGTTEEEEEEEEEEEHHHHHHHHHHH.HHCT---SSHHHHHHHT..T- CS
        IspD  97 vHDaARpllkaadiaellaaaeqstqgailalpvkDtikrveadglvaetedRegLwaaqtPqgFrvdlllaahakg.eqegaeitDdaslveki..Gl 192
                  HDa Rpll+   + e ++a+ + ++++ +a+p  Dti +v+ + ++++ + R+ L++ qtPq+Fr   +++a++ +   + + +tDd  +v +   G+
  KIR65937.1 124 FHDAVRPLLSGRIVRECVNALWT-YSAVDVAIPSADTIIQVDDNDCITDIPVRSTLRRGQTPQAFRSGTIREAYRIAaGDPDFAATDDCGVVLRYlpGT 221
                 *********************98.9*************************************************98757889******998755449** PP

                 -EEEEE--TTG----SHHHHHHHHH CS
        IspD 193 svkvVeGeednlKittpeDlalAea 217
                  +kv++G+++n+K+t+p D+ lA+ 
  KIR65937.1 222 PIKVIDGSDENIKVTHPVDVHLADK 246
                 *********************9986 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.1   6.7e-34   1.1e-30       2     191 ..     271     440 ..     270     444 .. 0.92

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 6.7e-34
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 +++v G+s GIG+++ +   + Ga+v+ ++rs                      + v+ +e+vea++++a + +g++d +v  AGi ++g+ +e+++e+
  KIR65937.1 271 TIVVFGGSYGIGHELTELARRHGAQVFPFSRSTT-------------------GTHVERAEDVEAALKTAFEATGRIDHVVVTAGILEKGELAEMDQET 350
                 6889999999999999999999999988888844...................34578899************************************** PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 ++rv++vN++g++ ++r+ lp+ l+q +G+    +S     + a +a YsA+Kaa++ lt++l++e+a+ g+rvn+++P  ++T+m++++ 
  KIR65937.1 351 MDRVLHVNFVGPVTIARQSLPY-LQQTKGQLLLYTSSSYTRGRARYALYSATKAALVNLTQALSDEWAEFGVRVNCINPERTATPMRTKAF 440
                 **********************.66*******99999999**********************************************99875 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.25   4.1e+02       4      22 ..     279     297 ..     274     307 .. 0.87
   2 !   98.5   0.1   2.6e-31   4.2e-28      36     185 ..     287     442 ..     281     461 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.25
                   TSHHHHHHHHHHHTT-EEE CS
  adh_short_C2   4 sgIGraiAkalaeeGaevv 22 
                    gIG+++ +++ ++Ga+v 
    KIR65937.1 279 YGIGHELTELARRHGAQVF 297
                   59***************97 PP

  == domain 2  score: 98.5 bits;  conditional E-value: 2.6e-31
                   HHHHHTTSEE.......EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.CEEE CS
  adh_short_C2  36 elaeelgaev.......lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalplmkeg.gsiv 124
                   ela+++ga+v         + V++ e+vea+ +++ e +g++D +v  agi +k  g+++e+++e +dr+l+vn+ + + +a++ lp+++++ g+++
    KIR65937.1 287 ELARRHGAQVfpfsrstTGTHVERAEDVEAALKTAFEATGRIDHVVVTAGILEK--GELAEMDQETMDRVLHVNFVGPVTIARQSLPYLQQTkGQLL 381
                   5555555553344444466789********************************..*******************************777766**** PP

                   EEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTH CS
  adh_short_C2 125 nlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgf 185
                     +s + +r+ + y+ y+a+Kaal++lt++l  e+++ g+RvN++ p  ++T++ +++ g+
    KIR65937.1 382 LYTSSSYTRGRARYALYSATKAALVNLTQALSDEWAEFGVRVNCINPERTATPMRTKAFGE 442
                   ******************************************************5554433 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.2   1.5e-14   2.5e-11       1     121 [.      26     155 ..      26     255 .. 0.80
   2 ?   -1.8   0.0       2.1   3.4e+03      43      92 ..     273     334 ..     240     336 .. 0.53

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 1.5e-14
                   EEEEEESS-TTTT.T.THHHHCCCCCCHHHHHHHHHCTT..-CEEEEECSH...CHHHHHHTTCTS-EEE-TTSS.-SHHHHHHHHHHHH..SSSCE CS
  NTP_transf_3   1 aviLAGGrSsRmg.g.dKallplggkpllervldalraa.gvdevvvvggd...eevlaalarlgvrvvededpg.kgplaslaaalraaa.dadav 89 
                   av+LAGG ++R+g g +K+ll+++gkp++e++l+ ++aa ++de++v   d   ++ ++ +++ g r v+   +g     a+ + al+a++ ++  +
    KIR65937.1  26 AVVLAGGTGTRLGlGiPKQLLKIAGKPIIEHTLAVFEAApEIDEIIVLMADghvPDAQQIVDKAGFRKVSKVIAGgDTRNATTRIALDAVGeGDVNI 122
                   79***********669***********************55*******8774466777788888988888877752555677888888874233344 PP

                   EEEETT-TT--HHHHHHHHHCH.HHHTSSEEEE CS
  NTP_transf_3  90 lvlacDmPlltpelverllaaa.aasgadvvvp 121
                   l+  +  Pll+  +v++ ++a+ + s  dv++p
    KIR65937.1 123 LFHDAVRPLLSGRIVRECVNALwTYSAVDVAIP 155
                   555555688888888888877732333355555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.1
                   EEECSH....CHHHHHHTTCTS-EEE-TTSS-SHH........HHHHHHHHHH.SSSCEEEE CS
  NTP_transf_3  43 vvvggd....eevlaalarlgvrvvededpgkgpl........aslaaalraaadadavlvl 92 
                   vv gg+    +e+++ ++r+g++v++ + + +g+         a+l++a +a ++ d+v+v+
    KIR65937.1 273 VVFGGSygigHELTELARRHGAQVFPFSRSTTGTHveraedveAALKTAFEATGRIDHVVVT 334
                   44444444444555555555555544433333322222222224555555555556666665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0       0.1   1.7e+02       2      34 ..     271     302 ..     270     309 .. 0.76
   2 !   28.0   0.1   1.1e-09   1.8e-06      62     161 ..     308     410 ..     302     427 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.1
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRs 34 
                 t ++ GG  g+G el++ la+++ +++  +sRs
  KIR65937.1 271 TIVVFGGSYGIGHELTE-LARRHGAQVFPFSRS 302
                 56899*********987.566666677788888 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 1.1e-09
                 TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH--TT-HHHHHHHHHHH CS
          KR  62 vsdkdavealleeikaeeppikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelled...esldffvlfSSiagllgsagqanYaaaNaflD 157
                 v  +++vea+l+++ + +++i  v+ +Ag+l+++ l+em++e++++vl+  + G   + + + +   ++   ++l++S + + g a  a Y+a+ a l 
  KIR65937.1 308 VERAEDVEAALKTAFEATGRIDHVVVTAGILEKGELAEMDQETMDRVLHVNFVGPVTIARQSLPylqQTKGQLLLYTSSSYTRGRARYALYSATKAALV 406
                 78899**********99*****************************************999877776788899999*****************998876 PP

                 HHHH CS
          KR 158 alae 161
                  l +
  KIR65937.1 407 NLTQ 410
                 5555 PP

>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.2e-08   6.9e-05       2      67 ..      26      88 ..      25     119 .. 0.80
   2 ?   -3.4   0.0       3.6   5.9e+03     104     128 ..     270     294 ..     251     310 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.2e-08
                     EEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHH.TT-SEEEEEEETTTHHHHHHHHTT CS
  NTP_transferase  2 avILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlan.sgieeiivvltqehsflveeqlke 67
                     av+LaGG+GtRL      ++k+l+ ++gk ++i++tl    +  +i+eiiv + + h + +++ + +
       KIR65937.1 26 AVVLAGGTGTRL---GLGIPKQLLKIAGK-PIIEHTLAVFEAaPEIDEIIVLMADGHVPDAQQIVDK 88
                     8**********7...6899**********.********9987689***7777777666655554444 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.6
                      .EEEEETTEEEESTTHHHHHHHHHT CS
  NTP_transferase 104 elvlvLggDhlikdayeeavkkaie 128
                       +++v+gg   i+++++e+ +++ +
       KIR65937.1 270 RTIVVFGGSYGIGHELTELARRHGA 294
                      4677777777777777777777654 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   4.7e-07   0.00076       2     103 ..     271     388 ..     270     404 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.7e-07
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT..T--TTSHHHHHHHH......HHH--SEEEE------HHHHHHS...HHHHHHHHTHHHHHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre..eldltdaeavaell......keakpdvvvnaAAytavDkaEse...eeaayavnaeavealA 86 
                    +i+v+G++  +G eL+++++++g++v +++r+   + +++ae v+++l           +vvv a+   +   aE +    ++  +vn  ++ ++A
     KIR65937.1 271 TIVVFGGSYGIGHELTELARRHGAQVFPFSRSttGTHVERAEDVEAALktafeaTGRIDHVVVTAGILEKGELAEMDqetMDRVLHVNFVGPVTIA 366
                    699**************************9996645667777777777333332222345999999*********882233567899********* PP

                    HHH.....HHCT-EEEEEEEGG CS
  RmlD_sub_bind  87 eaa.....aavgalLihvStDy 103
                    ++      +  g lL++ S+ y
     KIR65937.1 367 RQSlpylqQTKGQLLLYTSSSY 388
                    9864444367899999999988 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   8.4e-05      0.14       1     156 [.     272     412 ..     272     452 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.4e-05
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHH.T-SEEEE--S..---HHHHH..HSHHHHHHHHTHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkee.qpdavihlAa..vggvaass..edpadfieknlqg 94 
                 i+V G++  iG  l++   ++g +v  ++r +++ + +r ed          ++al+ +f+ + ++d+v+  A+  ++g  a++  e+  ++++ n++g
  KIR65937.1 272 IVVFGGSYGIGHELTELARRHGAQVFPFSRSTTGTHVERAED---------VEAALKTAFEATgRIDHVVVTAGilEKGELAEMdqETMDRVLHVNFVG 361
                 789999999**********************99999888773.........456777778777799999999995333333333113345667789999 PP

                 HHHHHHHHH....HHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHH CS
   Epimerase  95 tlnlleaar....kagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveay 156
                  ++++  +     +++ + ll+ sSs + G+                    Y+a+K+a  +l++a+
  KIR65937.1 362 PVTIARQSLpylqQTKGQLLLYTSSSYTRGRARY---------------ALYSATKAALVNLTQAL 412
                 9999888774443334448888888877775443...............23555555555555555 PP

>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.8e-05      0.11      15      45 ..      42      72 ..      25     111 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.8e-05
                  TGGGSEETTEEHHHHHHHHHHHTTTTSEEEE CS
  CTP_transf_3 15 gKnlldlggkpliayvleaalkskafekviv 45
                   K ll+++gkp+i+++l +   +++++++iv
    KIR65937.1 42 PKQLLKIAGKPIIEHTLAVFEAAPEIDEIIV 72
                  599*************************998 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00017      0.28      29     115 ..     262     344 ..     242     351 .. 0.69
   2 ?   -2.9   0.0       2.3   3.8e+03      50      75 ..     411     435 ..     407     461 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
                   GSBS-GTTSEEEEES-S.HHHHHHHHHHHHTT-EEEEESSSHHHHH..CHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTSBSHHHHH CS
  2-Hacid_dh_C  29 llgkelsgktvGiiGlG.rIGqavakrlkafgmkviaydrskkkee..eeeelgvelvsleellaesDivslhlpltpetrhlinaeela 115
                      +el+g+t+ ++G    IG+++ ++++  g++v+ ++rs + ++  +        +++e++l+++   +  +     t +++++ ela
    KIR65937.1 262 GYTEELTGRTIVVFGGSyGIGHELTELARRHGAQVFPFSRSTTGTHveR-------AEDVEAALKTAFEATGRIDHVVVTAGILEKGELA 344
                   56679********986536**********************88666322.......3344444444444444444444455555555555 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.3
                   HHHHHHHHTT-EEEEESSSHHHHHCH CS
  2-Hacid_dh_C  50 avakrlkafgmkviaydrskkkeeee 75 
                   a+ +  ++fg++v ++++ ++++  +
    KIR65937.1 411 ALSDEWAEFGVRVNCINPERTATP-M 435
                   566667889999999999887665.2 PP

>> UDPGP  UTP--glucose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00025      0.41      53      79 ..      23      49 ..      12      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00025
       UDPGP 53 klavlkLnGglGtsmGckgpKslieVr 79
                +++ + L+Gg Gt++G+  pK l+++ 
  KIR65937.1 23 RTVAVVLAGGTGTRLGLGIPKQLLKIA 49
                677888*****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3732.10
//
Query:       KIR65938.1  [L=298]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-15   56.1  16.4    3.3e-15   56.1  16.4    1.4  2  ABC2_membrane  ABC-2 type transporter
  ------ inclusion threshold ------
        4.1    7.9   7.5        3.6    8.1   0.3    2.9  2  DUF202         Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1  16.4   3.7e-19   3.3e-15      13     209 ..      57     255 ..      46     256 .. 0.91
   2 ?   -3.1   0.3      0.46   4.2e+03      87     108 ..     263     284 ..     261     288 .. 0.56

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 3.7e-19
  ABC2_membrane  13 qrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnr.pgllffsvlflafsaltsvapvferergvlerelvsplyslsayvlakvlvelp 106
                      + +  lg lw++++pl  a v+ ++fg    +++++ n+ ++l +++++f++++++ + ++ +++++  l r l +p   l+  v+   + +l+
     KIR65938.1  57 ASFSNARLGQLWQVLTPLTNAAVYYLIFGL-VlKQNSIPNFiAYLTAGLFIFNFTQTAVQNGTQSITGNLGLIRALHFPRACLPLAVMLTQFQQLM 151
                    5577888999*******************4.43666667556**************************************9999999999999999 PP

  ABC2_membrane 107 vsllqalifllivyflvgldlsrfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm....pkwlqwiaylnPl 198
                     sl++ + ++l++  ++ +++   +l+++++ll+al+  +l ++++ + +++ d  q++++++  +++ sG+++++       p+w   i ++nP+
     KIR65938.1 152 ASLVVLMGIVLVTGEPLTVEW---LLLVPVVLLQALFNAGLTMAVARMGSKVADLKQVMPFLVRTWMYGSGVLYNVALFeenlPGWATRIVEANPM 244
                    999999999999999888888...9***************************************************887777799*********** PP

  ABC2_membrane 199 tyavealrsnl 209
                      ++e+ r++l
     KIR65938.1 245 LVYIELARHAL 255
                    ********987 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.46
  ABC2_membrane  87 vsplyslsayvlakvlvelpvs 108
                    +s +  +++y++a ++v+ + +
     KIR65938.1 263 NSSMVQAWTYAVAWAVVMGVGG 284
                    5556666666666665555544 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   2.0     0.031   2.7e+02      18      44 ..      97     123 ..      95     196 .. 0.65
   2 ?    8.1   0.3    0.0004       3.6      39      65 ..     264     290 ..     209     293 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.031
      DUF202  18 lalialglallrffltgepsalgkilg 44 
                 +a +++gl++++f +t  ++ +++i g
  KIR65938.1  97 IAYLTAGLFIFNFTQTAVQNGTQSITG 123
                 789999999999988444444333333 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0004
      DUF202  39 lgkilglilivlgiltllvglvrylrr 65 
                 ++++ +++++v+++++++vg + y++r
  KIR65938.1 264 SSMVQAWTYAVAWAVVMGVGGFIYFWR 290
                 357779*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2247.08
//
Query:       KIR65939.1  [L=211]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-30  103.3   8.6    8.7e-30  103.3   8.6    2.2  2  TetR_C_11      Tetracyclin repressor-like, C-terminal domain
    5.6e-13   48.5   0.1    1.3e-12   47.2   0.1    1.7  1  TetR_N         Bacterial regulatory proteins, tetR family
    0.00042   20.1   0.7     0.0013   18.5   0.7    1.8  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
     0.0025   17.6   0.9     0.0062   16.3   0.9    1.6  1  HTH_23         Homeodomain-like domain
     0.0027   17.7   0.8     0.0027   17.7   0.8    1.6  2  TetR_C_7       AefR-like transcriptional repressor, C-termina
  ------ inclusion threshold ------
      0.024   14.7   2.1        3.5    7.8   0.0    2.6  2  HTH_20         Helix-turn-helix domain
      0.084   13.0   0.2       0.14   12.2   0.2    1.3  1  HTH_7          Helix-turn-helix domain of resolvase
      0.091   12.9   0.9        0.3   11.2   0.9    1.9  1  HTH_28         Helix-turn-helix domain
        5.5    7.4  12.8       0.08   13.3   1.1    3.0  3  HTH_31         Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.4      0.16   3.1e+02      66      82 ..      12      28 ..       2      57 .. 0.52
   2 !  103.3   8.6   4.4e-33   8.7e-30       3     113 .]      82     192 ..      81     192 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.16
   TetR_C_11 66 rAvarGelradadvelv 82
                 Av rGe+   +  +l+
  KIR65939.1 12 AAVLRGEITTAIRRALM 28
                34444444443222222 PP

  == domain 2  score: 103.3 bits;  conditional E-value: 4.4e-33
   TetR_C_11   3 DtGslrgDLrallralaealaspragallrallaeaqrdpelaealrerlleprraalravlrrAvarGelradadvelvldlllgpllyrllltgepl 101
                 DtGslrgDL  llr +a al++p a++++++llaea+r+pe+ + l+++l +++++    +++rAvarGel+ad+d+ +++dl++gpl++rl +t++ +
  KIR65939.1  82 DTGSLRGDLGLLLRVVAHALSHPLAAQIVPDLLAEAARNPEIDATLQAALRAQQQEVGGSLVARAVARGELAADTDPGAAVDLIVGPLYWRLAITRTMP 180
                 9************************************************************************************************** PP

   TetR_C_11 102 ddafaerlvdav 113
                 ++a++++lv+av
  KIR65939.1 181 TEAYLDALVEAV 192
                 *********987 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.1   6.8e-16   1.3e-12       3      47 .]      25      69 ..      23      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 6.8e-16
                HHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  3 daArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                 a ++ +a  Gy +++++++A+rAGvsk a+Yr+++sK eL+ ++
  KIR65939.1 25 RALMQELAAVGYGRLSIEAVARRAGVSKTAIYRRWSSKLELVVEV 69
                6778999**********************************9986 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.7   6.4e-07    0.0013       6      38 ..      25      59 ..      22      61 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.4e-07
  HTH_AsnC-type  6 rkILeaLqed..aRisyaeLAervGlSestvlrRv 38
                   r+++++L +   +R+s +++A+r G+S +++ rR+
     KIR65939.1 25 RALMQELAAVgyGRLSIEAVARRAGVSKTAIYRRW 59
                   4555566655889*********************7 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.9   3.1e-06    0.0062       3      37 ..      21      59 ..      20      68 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.1e-06
      HTH_23  3 sereRlrillllae...GlsvreIAreLgvsrrTvy.rw 37
                ++++R+++  l+a+   +ls++++Ar+ gvs+  +y rw
  KIR65939.1 21 TAIRRALMQELAAVgygRLSIEAVARRAGVSKTAIYrRW 59
                6889********************************777 PP

>> TetR_C_7  AefR-like transcriptional repressor, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.2   6.5e+03      58      58 ..      29      29 ..       9      48 .. 0.53
   2 !   17.7   0.8   1.3e-06    0.0027       8     107 ..      95     190 ..      89     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.2
                H CS
    TetR_C_7 58 a 58
                +
  KIR65939.1 29 Q 29
                2 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.3e-06
                 HHHHHHHT-HHHHHHHHHHHHHHHT-HHHHCCHHHT.T----HHHHHHHHHHHHTTSB-SS.-HHHHHHHHHHHHHHHHTHHHHHH------HHHHHHH CS
    TetR_C_7   8 rallalllspevlalaRlviaeaerfPelarafyeagpgrveealaayLeaavaaGrLrid.DpelAAeqflgllkgelfwprlfgveeppseeeierv 105
                 r +++ l++p +++++  ++aea r+Pe+  +  +a  ++ +e   +++++ava+G+L++d Dp  A      l+ g l w++ +   + p+e+ +++ 
  KIR65939.1  95 RVVAHALSHPLAAQIVPDLLAEAARNPEIDATLQAALRAQQQEVGGSLVARAVARGELAADtDPGAAV----DLIVGPLYWRLAITR-TMPTEAYLDAL 188
                 55667777778888888899****************999999999**************997887774....566677777766664.44666666666 PP

                 HH CS
    TetR_C_7 106 ve 107
                 ve
  KIR65939.1 189 VE 190
                 55 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0018       3.5      11      49 ..      23      64 ..      18      70 .. 0.88
   2 ?    5.8   0.5    0.0074        15       3      35 ..      97     128 ..      95     139 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0018
                HHHHHHHHH..STCTTB-HHHHHHHHTS-HHHHHHHH.HHHH CS
      HTH_20 11 vRrrilraL..araegltaselaerldlskntlsyHL.rvLe 49
                 Rr+++++L   + + l+ +++a+r ++sk+ +++++  +Le
  KIR65939.1 23 IRRALMQELaaVGYGRLSIEAVARRAGVSKTAIYRRWsSKLE 64
                5999999999999999******************99866665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0074
                 HHHHHS-HHHHHHHHHHSTCTTB-HHHHHHHHT CS
      HTH_20   3 iaeALahPvRrrilraLaraegltaselaerld 35 
                 +a+AL+hP  + i   L  ae++  +e++++l+
  KIR65939.1  97 VAHALSHPLAAQIVPDL-LAEAARNPEIDATLQ 128
                 799*************9.999999999999994 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   7.3e-05      0.14      22      43 ..      39      60 ..      34      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.3e-05
                --STTTSSSS---SSSS--SS- CS
       HTH_7 22 isiskIAkevnisRsTvYRyla 43
                 si ++A++ ++s++ +YR ++
  KIR65939.1 39 LSIEAVARRAGVSKTAIYRRWS 60
                589****************886 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.9   0.00015       0.3       2      32 ..      24      58 ..      23      64 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
      HTH_28  2 Rleiikllaa...Gh.svreaArelgisrrtvyrW 32
                R+  +++laa   G+ s+ ++Ar+ g+s + +yr 
  KIR65939.1 24 RRALMQELAAvgyGRlSIEAVARRAGVSKTAIYRR 58
                566778888888899*****************764 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.1     4e-05      0.08      13      33 ..      27      57 ..       6      74 .. 0.83
   2 ?   -3.0   0.1         5     1e+04      10      22 ..      87      99 ..      85     102 .. 0.56
   3 ?    1.4   1.3      0.22   4.3e+02      37      56 ..     176     194 ..     125     208 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4e-05
      HTH_31 13 a..........GLsqeevAerlgvsestlsr 33
                           +Ls e+vA+r+gvs++ + r
  KIR65939.1 27 LmqelaavgygRLSIEAVARRAGVSKTAIYR 57
                244447777778***************9987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5
      HTH_31 10 ReraGLsqeevAe 22
                R   GL ++ vA 
  KIR65939.1 87 RGDLGLLLRVVAH 99
                5555665555555 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.22
      HTH_31  37 Grrgrpspavlealaralgl 56 
                  r   p++a l+al++a+ +
  KIR65939.1 176 TRT-MPTEAYLDALVEAVAT 194
                 455.4777766666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1516.47
//
Query:       KIR65940.1  [L=398]
Description: hydroxyglutarate oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-64  218.7   9.9      2e-64  218.4   9.9    1.1  1  DAO            FAD dependent oxidoreductase
    1.9e-05   24.0   3.3      0.094   11.9   0.1    3.0  3  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00023   21.3   1.6     0.0005   20.2   0.7    2.0  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00053   19.4   0.6     0.0063   15.8   0.1    2.1  2  Amino_oxidase  Flavin containing amine oxidoreductase
     0.0015   17.7   1.8     0.0053   15.8   0.1    2.2  2  Lycopene_cycl  Lycopene cyclase protein
     0.0015   17.2   0.2          6    5.3   0.0    3.0  3  Mqo            Malate:quinone oxidoreductase (Mqo)
     0.0026   18.3   0.4       0.12   13.0   0.4    2.5  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0095   15.9   2.8       0.59   10.1   0.3    2.4  2  NAD_binding_9  FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.011   15.1   0.2        3.4    6.8   0.1    2.3  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
       0.02   14.0   4.5       0.95    8.5   4.5    2.2  1  FAD_binding_2  FAD binding domain
      0.028   14.7   0.6        0.1   12.9   0.1    2.2  2  TrkA_N         TrkA-N domain
      0.031   13.6   0.2      0.072   12.4   0.0    1.6  2  GMC_oxred_N    GMC oxidoreductase
      0.083   13.2   0.0       0.16   12.3   0.0    1.4  1  PTH2           Peptidyl-tRNA hydrolase PTH2


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.4   9.9   1.4e-67     2e-64       2     351 ..       4     390 ..       3     391 .. 0.85

  Alignments for each domain:
  == domain 1  score: 218.4 bits;  conditional E-value: 1.4e-67
                 EEEECTSHHHHHHHHHHHHT..T..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHH CS
         DAO   2 vviiGGGiiGlstAyeLarr..g..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeel 96 
                  v++GGGi+Gl++A+ L +   g  Vt+lek+   + +++g+nsg++h+g++ ++++s +a l++++ + + e+++ +g  ++y+ +G+l++a+d++el
  KIR65940.1   4 FVVVGGGIVGLAVAHRLVTDrpGdsVTVLEKEAGWAAHQTGHNSGVIHAGVY-YKPGSLKATLCKAGSASMVEFCAAHG--LPYEVCGKLIVATDAAEL 99 
                 79***************7543449********99999**************9.55577999****************99..99**************** PP

                 HHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEE CS
         DAO  97 ealdkllallleagldaelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gendaad 194
                 ++l++l ++++++gl+++l+ a+e++e ep++   ++al++ +tg+vd+ ++++ la+ ++a+G+++++++evtg+ ++ g+ + v  tt  ge++ ad
  KIR65940.1 100 PRLRALHERAEANGLPVRLIGAAEAAEHEPHV-AAVAALHVASTGIVDYGAVCRKLAELLAAAGADLRTRAEVTGVTDRPGG-VVV--TTTaGEVV-AD 193
                 ***999999999******************75.45899*************************************9554333.333..44448875.5* PP

                 EEEE--GGGHHHH.HTT.CTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSE..................EET CS
         DAO 195 avVnaaGawsdll.gll.keldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtad..................ees 273
                  ++n+aG+++d + +l+  + +++i+p+rg+++ l p  + lv+  +i+pvp++  ++ gv++t + dg+v +G++a+                  +  
  KIR65940.1 194 VLINCAGLHADRVaRLAgVPTPVRIVPFRGEYYELTPQRRGLVRG-LIYPVPDPQFPFLGVHLTKMIDGSVHAGPNAVlataregyswgrfsprdvW-- 289
                 ***********775666755578************9988877655.***********************************9966655555544440.. PP

                 TCSSTSCSHH..........................HHHHHHHHHHHHSGGG..CGEEEEEEEEEE...ETTS....SEEEEEEETEEEEEEEEECTTT CS
         DAO 274 gdddpevdee..........................didellealrklfPql..gdvlrkwaGlrp...lpdg....lpligetpgvkglylatGhsgh 337
                          +                            +++  +l++l+P+l  +d++r+ aG+r+   lpdg    ++li e    ++ +++ ++ ++
  KIR65940.1 290 ---------DeltyrglwalgrrhfrygltevarslSKARFAASLARLVPELtpADIVRAGAGVRAqaiLPDGglvdDFLIVE---ADRQVHVLNAPSP 376
                 .........2455555666666666666666666668888***********98899**********76559998999999988...48999******** PP

                 HHHHHHHHHHHHHH CS
         DAO 338 GltlapatGkllae 351
                 + t+++ ++++++ 
  KIR65940.1 377 AATSSLEIARHIVS 390
                 ***********986 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.3   0.00015      0.21       2      36 ..       3      39 ..       2      62 .. 0.70
   2 !   11.9   0.1   6.8e-05     0.094     188     251 ..     153     213 ..     107     219 .. 0.84
   3 ?   -0.1   0.0      0.32   4.4e+02     106     152 ..     299     344 ..     295     347 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
                 SEEEE--SHHHHHHHHHHHH..HTS-EEEEETTHCHH CS
                 xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq..agakvtlvelegtcl 36
                 + vv+GgG+ Gla+a++l +   g  vt++e+e  + 
   KIR65940.1  3 RFVVVGGGIVGLAVAHRLVTdrPGDSVTVLEKEAGWA 39
                 5688888888888888888854588888887554444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 6.8e-05
                  HHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 188 aleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklgle 251
                   l+e l + G +++++++v+ +++++  + vv+++  e+ ad ++ ++G+ +++    + +g++
   KIR65940.1 153 KLAELLAAAGADLRTRAEVTGVTDRPGGV-VVTTTAGEVVADVLINCAGLHADRVA--RLAGVP 213
                  467888999*****************944.788888889************99866..456665 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.32
                  ---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 106 AtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGy 152
                  A G + ++ g+  va    k  r  +s  +l  +l+p++iv+ G+G+
   KIR65940.1 299 ALGRRHFRYGLTEVARSLSKA-RFAASLARLVPELTPADIVRAGAGV 344
                  777788888888886666555.99999999****************8 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.7   3.7e-07    0.0005       1      29 [.       6      36 ..       6      54 .. 0.86
   2 ?   -2.5   0.0       4.5   6.2e+03      22      46 ..     169     193 ..     154     198 .. 0.60

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3.7e-07
                   EE--SHHHHHHHHHHHCC..TEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka..gfdvlllekrd 29
                   +vG+G+ Gl+ A++L  +  g +v++lek  
     KIR65940.1  6 VVGGGIVGLAVAHRLVTDrpGDSVTVLEKEA 36
                   8**************9875788******985 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.5
                    EEEE-SSSSSSGGG-EECETTCEEC CS
  NAD_binding_8  22 vlllekrdrlGGraasyevpgvrvd 46 
                     ++    dr+GG + + + ++v++d
     KIR65940.1 169 AEVTGVTDRPGGVVVTTTAGEVVAD 193
                    4444456788887777777666655 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.075     1e+02       3      22 ..      13      34 ..      11      37 .. 0.83
   2 !   15.8   0.1   4.6e-06    0.0063     209     261 ..     147     200 ..      88     216 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.075
                   HHHHHHHH..HHTTEEEEEEES CS
  Amino_oxidase  3 GLaaArqL..lsaGfdVtvlEa 22
                   GLa+A++L   + G++VtvlE 
     KIR65940.1 13 GLAVAHRLvtDRPGDSVTVLEK 34
                   9*******755555*******7 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 4.6e-06
                    THHHHHHHHH..TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S- CS
  Amino_oxidase 209 lsqlpealae..elrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvp 261
                    ++++ + lae   + g d+r++++V+ ++  ++gv vt++ gev  aD  + ++ 
     KIR65940.1 147 YGAVCRKLAEllAAAGADLRTRAEVTGVTDRPGGVVVTTTAGEV-VADVLINCAG 200
                    78899999999999*****************************9.6666555444 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   3.9e-06    0.0053       3      34 ..       5      36 ..       4      45 .. 0.89
   2 ?    0.8   0.1      0.14   1.9e+02      92     140 ..     153     200 ..      76     214 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.9e-06
  Lycopene_cycl  3 vviGaGpAglslAarlteakpglkvvlieasp 34
                   vv+G+G  gl++A+rl+  +pg +v+++e  +
     KIR65940.1  5 VVVGGGIVGLAVAHRLVTDRPGDSVTVLEKEA 36
                   8***************************8655 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.14
  Lycopene_cycl  92 ellerlveng.vklleakvesveeeeageslvvleggrkirarlvvdarg 140
                    +l+e l+ +g   +++a v+ v++ +   ++v++ +g+ + a + +   g
     KIR65940.1 153 KLAELLAAAGaDLRTRAEVTGVTDRPG-GVVVTTTAGE-VVADVLINCAG 200
                    344444433304567788888888887.4555555554.44556666555 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.1    0.0073        10       5      56 ..       4      53 ..       1      57 [. 0.85
   2 !    5.3   0.0    0.0044         6     164     210 ..     132     177 ..     123     191 .. 0.84
   3 ?    3.8   0.0     0.013        18     356     443 ..     307     391 ..     301     397 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0073
         Mqo  5 vvliGaGimsatlgvllkelepelsievlerldkvaeessnawnnaGtGHsa 56
                 v++G+Gi+  +++  l + +p  s++vle+    a+    + +n+G  H++
  KIR65940.1  4 FVVVGGGIVGLAVAHRLVTDRPGDSVTVLEKEAGWAAHQ--TGHNSGVIHAG 53
                699***************************988877764..45678877775 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0044
         Mqo 164 ekvaatrieeGtdvnfgaltrqllkalekkkgvelklkhevkdlkre 210
                   vaa ++++   v++ga+ r+l++ l++ +g++l+++ ev+ ++ +
  KIR65940.1 132 AAVAALHVASTGIVDYGAVCRKLAELLAA-AGADLRTRAEVTGVTDR 177
                 5688888888889************9955.9**********998765 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.013
         Mqo 356 Ylieqvlks..kedrlealreflpeakkedWelvvaGqRvqvikkdeekggvlefGtevvasadgslaalLGasPGAstavsimlevlek 443
                 Y +++v++s  k++  ++l + +pe +  d   + aG R q i  d   gg +     ++ +ad+ +  l   sP A  + +i+ +++++
  KIR65940.1 307 YGLTEVARSlsKARFAASLARLVPELTPADIVRAGAGVRAQAILPD---GGLV--DDFLIVEADRQVHVLNAPSPAATSSLEIARHIVSR 391
                 666666654214444578*************************993...4544..45688899**************9999998888766 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.4   8.5e-05      0.12       1      30 [.       3      34 ..       3      40 .. 0.88
   2 ?   -3.3   0.0       9.9   1.4e+04      46      68 ..     105     127 ..     103     135 .. 0.69
   3 ?    2.3   0.0      0.19   2.6e+02      44      77 ..     152     184 ..     148     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.5e-05
                EEEEECSSHHHHHHHHHH..HHTTSEEEEEES CS
   Pyr_redox  1 kvvvvGgGyiglElAgal..aelgkkVtvver 30
                + vvvGgG +gl +A  l   + g++Vtv+e 
  KIR65940.1  3 RFVVVGGGIVGLAVAHRLvtDRPGDSVTVLEK 34
                579***************866699*****997 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.9
                 HHHHHHHTTEEEECSEEEEEEEE CS
   Pyr_redox  46 lqeklekngievllntkveeieg 68 
                 l+e+ e+ng  v+l   +e+ e+
  KIR65940.1 105 LHERAEANGLPVRLIGAAEAAEH 127
                 77889999988887666655555 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.19
                 HHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEE CS
   Pyr_redox  44 kilqeklekngievllntkveeiegsedgvesvk 77 
                 + l+e l + g ++++ ++v+ ++  + gv  v+
  KIR65940.1 152 RKLAELLAAAGADLRTRAEVTGVTDRPGGVV-VT 184
                 5678889999**************9999943.33 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.3   0.00043      0.59       1      34 [.       5      35 ..       5      50 .. 0.79
   2 !    5.7   0.1    0.0095        13     117     154 ..     165     200 ..     146     202 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00043
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdps 34
                   ++vG+G+ Glav+ rL+  +      ++t+ +++
     KIR65940.1  5 VVVGGGIVGLAVAHRLVTDR---PGDSVTVLEKE 35
                   69****************95...55566777765 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0095
  NAD_binding_9 117 vevhraevvdleeradgqavlladgaslaadaVvLAlG 154
                    +   raev+ +++r++g+ v+++   ++ ad ++ + G
     KIR65940.1 165 L-RTRAEVTGVTDRPGGVVVTTTA-GEVVADVLINCAG 200
                    3.3699***********8665555.5566677666665 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0025       3.4       1     198 [.       5      37 ..       1      50 [. 0.56
   2 ?    6.0   0.0    0.0045       6.1      91     134 ..     158     201 ..     147     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0025
  Pyr_redox_3   1 iIiGaGPaGlaaaielk.kagledylilEkgnignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfelp 97 
                  +++G+G  Gla+a+ l  +   +++++lEk                                                                    
   KIR65940.1   5 VVVGGGIVGLAVAHRLVtDRPGDSVTVLEK-------------------------------------------------------------------- 34 
                  456666666666655531233345555555.................................................................... PP

  Pyr_redox_3  98 iklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtr 195
                                                                                                                    
   KIR65940.1   - --------------------------------------------------------------------------------------------------   -
                  .................................................................................................. PP

  Pyr_redox_3 196 gse 198
                  ++ 
   KIR65940.1  35 EAG 37 
                  444 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0045
  Pyr_redox_3  91 aksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGe 134
                   +    + ++  eV+ v+   +g +v+t+ +++ A+ +i  +G 
   KIR65940.1 158 LAAAGADLRTRAEVTGVTDRPGGVVVTTTAGEVVADVLINCAGL 201
                  555566778999*************************9988885 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.5   0.00069      0.95       3     168 ..       5     175 ..       3     213 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00069
                    EEE--SHHHHHHHHHHHH..TTT-EEEEESSSGGGS.GGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHT.....TT-S.-HHHH.HHHHHT CS
  FAD_binding_2   3 iViGsGlAGLaAAleaae..aGlkvavvekeqefgg.atawsqGgidavlspeqkkagikdspelhrtdtlkal.....dela.dqplv.eafvea 88 
                    +V+G+G+ GLa A+++     G +v+v+eke      +t   +G i a  + +        s+++ +  + +a+     + ++ + +++ +++v++
     KIR65940.1   5 VVVGGGIVGLAVAHRLVTdrPGDSVTVLEKEAGWAAhQTGHNSGVIHAGVYYKP------GSLKATLCKAGSASmvefcAAHGlPYEVCgKLIVAT 94 
                    9*************986554788*******998666555555555554331111......112222222222222222211111222211222222 PP

                    HHHHHHHHHHT.......T----BCCTSSB-EEE-TT-SSTEEEE-.STT-.......HHHHHHHHHHHHHHTCTEEEEESEEEEEEE CS
  FAD_binding_2  89 apeavdeLeel.......gvpfsrtedgpvdvrelGglsatartlhdaadarr.etlvtghallarlvesarkagvdfqerteadeLi 168
                     ++++  L++l       g+p+       ++++e  ++ ++   +  aa +   + +v+  a++  l+e + +ag d+++r+e++ ++
     KIR65940.1  95 DAAELPRLRALheraeanGLPVRL-----IGAAEAAEHEPH-VAAV-AALHVAsTGIVDYGAVCRKLAELLAAAGADLRTRAEVTGVT 175
                    222222222221113444444444.....666666666666.3333.33333336666777777777777777777777777777764 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   7.4e-05       0.1       1      67 [.       4      77 ..       4     136 .. 0.82
   2 ?   -0.8   0.1       1.2   1.7e+03       3      31 ..     144     178 ..     143     195 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.4e-05
                EEEES-SHHHHHHHHHHHHTT..EEEEEEESSHHHHHHHHHTT...SE..EEES-TTSHHHHHHTTGGGESEEE CS
      TrkA_N  1 iiiiGlGrvGrslaeeLsegg..kdvvvidkdeerveelreeg...le..vvvgdatdeevLeeagiekadavi 67
                ++++G G vG ++a++L ++   ++v+v +k+   +++ + ++   ++  v++  ++ +++L +ag +++  + 
  KIR65940.1  4 FVVVGGGIVGLAVAHRLVTDRpgDSVTVLEKEAGWAAHQTGHNsgvIHagVYYKPGSLKATLCKAGSASMVEFC 77
                79*****************666877******9855554444443354466777777778888888777766555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.2
                 EES-SHHHHHHHHHHHHTT......EEEEEEESSH CS
      TrkA_N   3 iiGlGrvGrslaeeLsegg......kdvvvidkde 31 
                 i+ +G v r+lae L ++g       +v+++ +++
  KIR65940.1 144 IVDYGAVCRKLAELLAAAGadlrtrAEVTGVTDRP 178
                 56689999999999999554777774477776655 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.3e-05     0.072       3      35 ..       4      37 ..       2      57 .. 0.85
   2 ?   -2.0   0.1       1.3   1.8e+03     149     235 ..      98     185 ..      86     201 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.3e-05
  GMC_oxred_N  3 elveggGsagsvvAaRL.sedpstsvlvleaggr 35
                 ++v+ggG++g +vA RL ++ p  sv+vle +++
   KIR65940.1  4 FVVVGGGIVGLAVAHRLvTDRPGDSVTVLEKEAG 37
                 79**************9455699******98875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
  GMC_oxred_N 149 esplnkallkaaeelGlp.....vprdlngk..hqcGvcllgvtcrtga.rqstarawLrpalerpnleiltgakaekiilegrkkravGVeasd 235
                  e p+ +al++ ae  Glp        ++ ++  h  +v  l  +  tg+  +++    L + l++ ++++ t+a+++ +     ++r  GV +++
   KIR65940.1  98 ELPRLRALHERAEANGLPvrligA-AEAAEHepHVAAVAALH-VASTGIvDYGAVCRKLAELLAAAGADLRTRAEVTGV-----TDRPGGVVVTT 185
                  556666777777777777555432.22222213444444444.333333144555555666666667777777776666.....45555555555 PP

>> PTH2  Peptidyl-tRNA hydrolase PTH2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011      0.16      15     108 ..      58     146 ..      49     155 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHHHHHHH.CHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSSSSSSTTCEEEEEEEEEEHHHHH CS
        PTH2  15 kGkiaaqcahAavalvkkllkesnekellkeWeeegqkkivlkveseeeLlelaakakalglpaalirDagrtqiepgtkTvlaigPapksivd 108
                  G++ a  ++A  a + ++    +       +e  g+  ++  + +   L  l+++a+a+glp++li  a  ++ ep+ + v a+  a+  ivd
  KIR65940.1  58 PGSLKATLCKAGSASMVEFCAA-HG----LPYEVCGKLIVATDAAELPRLRALHERAEANGLPVRLIGAAEAAEHEPHVAAVAALHVASTGIVD 146
                 5666666666666666666554.22....24666777788888888999***********************************9988888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2751.79
//
Query:       KIR65941.1  [L=380]
Description: pyridoxal phosphate-dependent aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.1e-106  354.4   0.0   9.2e-106  354.2   0.0    1.0  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
      2e-08   33.9   0.0    2.9e-08   33.3   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
      5e-08   32.5   0.0    8.3e-08   31.8   0.0    1.3  1  Aminotran_1_2    Aminotransferase class I and II
    0.00012   20.7   0.0    0.00019   20.1   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
     0.0077   16.1   0.0       0.34   10.9   0.0    2.4  2  DUF1967          Domain of unknown function (DUF1967)
  ------ inclusion threshold ------
      0.091   11.3   0.0       0.14   10.7   0.0    1.2  1  SHMT             Serine hydroxymethyltransferase


Domain annotation for each model (and alignments):
>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.2   0.0  3.1e-109  9.2e-106       3     360 ..      14     369 ..      12     370 .. 0.96

  Alignments for each domain:
  == domain 1  score: 354.2 bits;  conditional E-value: 3.1e-109
                      HHHHHHHHHHHHTSS-SSS.SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TT CS
  DegT_DnrJ_EryC1   3 keeeleaveevlksgwlts.gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpd 95 
                      +e el+a+ ev  sgwl   gp+ ++FE++faa +g++ha++++++ +AlhlaL  lgv pgdeV+v  +tF at +av+++gakpvf+Dv pd
       KIR65941.1  14 GEAELAAIAEVFASGWLAGaGPTCRRFEERFAAATGTRHALTTANCGSALHLALLTLGVRPGDEVVVGDYTFPATGHAVMWAGAKPVFADVRPD 107
                      688999************99************************************************************************** PP

                      TSSB-GGGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS-SSS-EEEEESTHH CS
  DegT_DnrJ_EryC1  96 tynidpaaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnlttGeGGavvtndee 189
                       +++dpaa+eaait+rt +I++V+++Gq+ad d+l+aia++hgl ++eDaA A Gatykg+++G+l+d+a+fSF++ K +t+GeGGa vt+ ++
       KIR65941.1 108 IWTVDPAAVEAAITPRTVGIIAVDAFGQPADYDELRAIADRHGLFLVEDAACAAGATYKGRPAGSLADVATFSFHGRKGITAGEGGAYVTDRDD 201
                      ********************************************************************************************** PP

                      HHHHHHHHHBTTCECCTCSSCECCS......S---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSSSEEESC CS
  DegT_DnrJ_EryC1 190 laekarvlrnhGlkrkaekryvgev......elGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttpketkkhawhl 277
                      la +ar+l+ +G++ + ++   +++      elGynyrl++++AAi laqL+rl +l+a +r+ a++y e+L++ e +++++++++++ h w  
       KIR65941.1 202 LAAHARKLHTYGVEGALTRAELSDLpipaftELGYNYRLSDVAAAIMLAQLDRLPDLLAAKRRTAARYGELLKDHELITTPHEAPDRE-HPWQS 294
                      **************866666666669**************************************************999999999988.***** PP

                      EEEEEHCCHHHCHHHHHHHHHHCCEE-B-SGSCHGGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHHHHHHHHHHH CS
  DegT_DnrJ_EryC1 278 yavlveeeaevkrdelvealkeegigtrvhypnplhrqpvyaerkeeasgdlpnaerlaervlsLplypelteedvdrVveal 360
                      y+v+++ +  ++r +++  l+++g++++     + h qp+y +++   +  +p++ +l++r+l++p++ +lt+++v++Vv++l
       KIR65941.1 295 YVVTLDPS--IDRGAVALGLRRRGVQCTFGT-YASHVQPLYGQSA---P--CPVSADLFARHLAIPMHANLTDAQVETVVATL 369
                      ******98..99***************9888.69*******9994...4..9****************************986 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   9.7e-12   2.9e-08      27     238 ..      30     278 ..      11     329 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 9.7e-12
                      CCT--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH-.-TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTT.TBE-HHHHHHHS CS
  Beta_elim_lyase  27 sYgedktvnrLedavaelfgkeaalfvpqGtaAnsillkill.qrgeevivtepahihfdetgaiaelagvklrdlknkea.Gkmdlekleaai 118
                        g  +t +r+e+++a+++g+ +al +++   A +++l +l  ++g+ev+v++   + f  tg ++  ag+k++ ++ + +  ++d++++eaai
       KIR65941.1  30 LAGAGPTCRRFEERFAAATGTRHALTTANCGSALHLALLTLGvRPGDEVVVGD---YTFPATGHAVMWAGAKPVFADVRPDiWTVDPAAVEAAI 120
                      567889**********************9777777777666559*****9986...567788888777******999988879*********** PP

                      --S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--SS-EEEEE-H CS
  Beta_elim_lyase 119 kevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllanvGgvlafrd 212
                      ++  +    +++i +      a Gq+   +elr   aia+++g+ l+ D+A  a a    +  ++  ++ v ++++ + K+++a  Gg  ++++
       KIR65941.1 121 TP--R---TVGIIAVD-----AFGQPADYDELR---AIADRHGLFLVEDAACAAGAT--YKGRPAGSLADVATFSFHGRKGITAGEGGAYVTDR 199
                      **..3...56766654.....348998888776...679************888877..56666666666678888899*********999999 PP

                      H.........................................................HHHHHHHHHHHHT---SSTHH CS
  Beta_elim_lyase 213 del.....................................................edylaerveqrkylggglrqagv 238
                      d+l                                                      d la  ++++ ++g+ l+++++
       KIR65941.1 200 DDLaaharklhtygvegaltraelsdlpipaftelgynyrlsdvaaaimlaqldrlPDLLAAKRRTAARYGELLKDHEL 278
                      9666777777777777777777777777777777777777777777777777777766777666666666666666655 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   2.8e-11   8.3e-08      49     194 ..      40     163 ..      11     179 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 2.8e-11
                    HHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHC CS
  Aminotran_1_2  49 leealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeape 144
                    +ee+ a   g       +r  a+++ ++ +al  al +l  + pgde++v d t++   +++ ++g++ v   ++ ++ +++d  a+e+a++    
     KIR65941.1  40 FEERFAAATG-------TRH-ALTTANCGSALHLALLTLG-VRPGDEVVVGDYTFPATGHAVMWAGAKPVFADVR-PDIWTVDPAAVEAAITP--- 122
                    5666666666.......455.9******************.9*******************************77.9***************9... PP

                    TTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCB CS
  Aminotran_1_2 145 gnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfv 194
                       +t +i+   ++   G+ a+ +el+++   a++++l+l+ D a a+++
     KIR65941.1 123 ---RTVGIIAVDAF---GQPADYDELRAI---ADRHGLFLVEDAACAAGA 163
                    ...88888887766...999*********...*********999877666 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   6.2e-08   0.00019      52     193 ..      35     178 ..      32     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.2e-08
                      HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTT.S-TTEEEEEESTSSHHHHHHHHHTHHH.TTCEEEE.ESTTSHHHHHHHCCTTE.EEE CS
  Cys_Met_Meta_PP  52 ptrsvleeriaaLeggeaalavssGmaAiaaailal.lkaGdeivvsddlYggtqrllkkvlkk.lgievkf.vdtsdleelekaikent.klv 141
                      pt + +eer aa  g+ +al ++   +A+++a+l+l ++ Gde+vv d+ +  t + +     k +  +v+  + t d++++e+ai+++t  ++
       KIR65941.1  35 PTCRRFEERFAAATGTRHALTTANCGSALHLALLTLgVRPGDEVVVGDYTFPATGHAVMWAGAKpVFADVRPdIWTVDPAAVEAAITPRTvGII 128
                      999*****************99877777778877775889************998776665555244443321445799*********772588 PP

                      EEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-GGGGT..-SEEE CS
  Cys_Met_Meta_PP 142 ylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqrplklg..aDivv 193
                       +++ + p    +D  ++ ++a  +g+ +v D++ a+++  +    g  aD+ +
       KIR65941.1 129 AVDAFGQP----ADYDELRAIADRHGLFLVEDAACAAGATYKGRPAGslADVAT 178
                      89999988....599999999999999999999999997766554444477766 PP

>> DUF1967  Domain of unknown function (DUF1967)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00011      0.34      49      68 ..      66      85 ..      62      86 .. 0.92
   2 ?    2.7   0.0     0.042   1.2e+02      30      54 ..     198     222 ..     194     225 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
                HHHTTT--TT-EEEETTEEE CS
     DUF1967 49 aLrkaGakeGdtVrIgdveF 68
                aL  +G+++Gd+V++gd++F
  KIR65941.1 66 ALLTLGVRPGDEVVVGDYTF 85
                78899*************99 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.042
                 TGGGHHHHHHHHHHTTHHHHHHTTT CS
     DUF1967  30 neeavrrfarrLkklGvedaLrkaG 54 
                 + + +   ar+L+ +Gve aL +a 
  KIR65941.1 198 DRDDLAAHARKLHTYGVEGALTRAE 222
                 666777779************9986 PP

>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.6e-05      0.14     174     211 ..     127     164 ..     103     204 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.6e-05
                 EEE-SST-S---HHHHHHHHHHTT-EEEEE-GGGHHHH CS
        SHMT 174 vaGtsaysrlidyarlreiadevgayllvdmahiaGlv 211
                 +    a+ +  dy+ lr iad+ g +l+ d a  aG  
  KIR65941.1 127 IIAVDAFGQPADYDELRAIADRHGLFLVEDAACAAGAT 164
                 566889**************************999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2889.85
//
Query:       KIR65942.1  [L=310]
Description: UDP-glucose 4-epimerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-53  182.0   0.0    1.5e-53  181.8   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.4e-51  175.9   0.0    1.8e-50  172.2   0.0    1.9  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    8.6e-26   90.6   0.0    1.1e-25   90.2   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    2.2e-20   73.3   0.0    7.3e-20   71.6   0.0    1.8  1  NAD_binding_10   NAD(P)H-binding
      4e-13   49.1   0.0    7.5e-13   48.2   0.0    1.4  1  RmlD_sub_bind    RmlD substrate binding domain
    6.3e-13   48.5   0.0    3.1e-12   46.2   0.0    1.9  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    3.8e-10   39.4   0.0    1.4e-06   27.6   0.0    2.2  2  NAD_binding_4    Male sterility protein
    5.9e-08   32.5   0.4    8.7e-07   28.7   0.1    2.0  2  NmrA             NmrA-like family
     0.0001   21.8   0.2     0.0002   20.9   0.2    1.4  1  adh_short        short chain dehydrogenase
  ------ inclusion threshold ------
      0.011   15.7   0.4      0.035   14.0   0.4    1.9  1  KR               KR domain
       0.12   12.7   0.1       0.25   11.6   0.1    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.15   12.5   0.0       0.29   11.6   0.0    1.5  1  UDPG_MGDP_dh_C   UDP-glucose/GDP-mannose dehydrogenase family


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.8   0.0   9.8e-57   1.5e-53       1     241 []       6     242 ..       6     242 .. 0.92

  Alignments for each domain:
  == domain 1  score: 181.8 bits;  conditional E-value: 9.8e-57
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlq 93 
                 +++tG++GfiG ++v  ll+kgy+v  +d+  ++++  + ++l      elv+ d++ + a+++++k  ++d v+hlAav+ ++ s  dp + i++n++
  KIR65942.1   6 VFITGGAGFIGLHVVPLLLDKGYRVRIFDNMFRGDRD-QVAKLaatgdvELVDQDVRYGGAVHAAMK--GCDLVVHLAAVS-INKSQADPYESIDINMV 100
                 68***************************98433333.33333678999******************..********9965.888899*********** PP

                 HHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTS.TTSHHHHHHH CS
   Epimerase  94 gtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngege.vsrvipalir 191
                 g+ n++ aa ++gvkrl+f+sS++vYG++++ p +e+     l p +pY ++K+age l+  y+++ gln i+lr fn+yGp++ ++   ++vi ++++
  KIR65942.1 101 GNHNVFAAAADHGVKRLVFASSASVYGDPKKLPMHEDD---RLDPLTPYCISKRAGEDLLAFYQRSKGLNWIALRFFNVYGPGQKPTAyYTSVINHFVK 196
                 *********************************99999...99****************************************666666********** PP

                 HHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTE.EEEES CS
   Epimerase 192 kilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkge.iyniG 241
                 ++++g+ + ++ g g++ +df++v D+a+ ++++le+    ++g+  +niG
  KIR65942.1 197 RLKTGQ-PPIIDGRGEQSMDFIHVHDIARSVVAALEA----EQGNvPVNIG 242
                 *****9.*****************************9....3444478887 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.2   0.0   1.2e-53   1.8e-50       1     331 [.       7     303 ..       7     304 .. 0.89

  Alignments for each domain:
  == domain 1  score: 172.2 bits;  conditional E-value: 1.2e-53
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    +iTG+aGfiG +++ lLl+kgy+v ++++     + +++++la      ++++++l+  D++   +++ +++ +  d v++LAA s +++s  +P 
     KIR65942.1   7 FITGGAGFIGLHVVPLLLDKGYRVRIFDNMFRG-DRDQVAKLA------ATGDVELVDQDVRYGGAVHAAMKGC--DLVVHLAAVS-INKSQADPY 92 
                    69**********************988766554.556666665......35789******************98..9*******98.7899999** PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS-TT. CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhesprrget. 191
                    + +++n++G ++++ a+ ++g++   r+++aS++ vYG++++ p++E+ +++P  PY ++K + + +   y+++ gl  +  ++fn ++p +++t 
     KIR65942.1  93 ESIDINMVGNHNVFAAAADHGVK---RLVFASSASVYGDPKKLPMHEDDRLDPLTPYCISKRAGEDLLAFYQRSKGLNWIALRFFNVYGPGQKPTa 185
                    *********************85...9*****************************************************************9986 PP

                    SCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS--.-EEE-TT-EEECHHCHHCCHHCCCHHHHHH............T CS
  GDP_Man_Dehyd 192 fvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpe.dyviatgethsvrefvelaflelgktiewegkgeeevgrakes 286
                    + t  i ++v r + g+ + ++ G +++  d+ hv+D+++ ++++l++++ +  ++i+tg  +sv +++e+ ++++g ++e               
     KIR65942.1 186 YYTSVINHFVKRLKTGQ-PPIIDGRGEQSMDFIHVHDIARSVVAALEAEQGNvPVNIGTGIDTSVATLAEILIKAVGVDVEP-------------- 266
                    89999999****99998.55668************************98864157899999999999999999999875432.............. PP

                    TGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHHH CS
  GDP_Man_Dehyd 287 gkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvre 331
                         +++p   r+  v ++++d+++a+e LgW+p++ +e+++++
     KIR65942.1 267 -----QFNP---REVLVSRRAADITRAREVLGWEPTIAVEDGMTD 303
                    .....3333...344578999********************9976 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.0   7.6e-29   1.1e-25       2     231 ..       8     232 ..       7     241 .. 0.82

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 7.6e-29
   3Beta_HSD   2 vtGgaGFlGralvkeLvrleelkevrvlDlrespel..leelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrn 98 
                 +tGgaGF+G ++v  L++ +    vr++D  ++       +l  ++  +++  Dv+    +++a++g d+v+hla+++  +++    e  ++n+ G +n
  KIR65942.1   8 ITGGAGFIGLHVVPLLLDKG--YRVRIFDNMFRGDRdqVAKLAATGDVELVDQDVRYGGAVHAAMKGCDLVVHLAAVSINKSQADPYESIDINMVGNHN 104
                 8*****************99..59*****66554440034444445555****************************999999999999********** PP

   3Beta_HSD  99 vleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdk......llvp 191
                 v +a+ ++gv++lv+ Ssa+v g+  ++ ++   +E+ +++  +  +y  sK+  E+l+        + g  l+ +aLR   +yG+g+k       + +
  KIR65942.1 105 VFAAAADHGVKRLVFASSASVYGD-PKKLPM---HEDDRLD--PLTPYCISKRAGEDLLAFYQR---SKG--LNWIALRFFNVYGPGQKptayytSVIN 192
                 ************************.444444...5777766..5579**********9876655...455..9**************972222113445 PP

   3Beta_HSD 192 llkqlaklglalfkigdeevlsdrvYvgNvawahilAara 231
                  +++ +k+g+  +  g  e+ +d++ v  +a   + A  a
  KIR65942.1 193 HFVKRLKTGQPPIIDGRGEQSMDFIHVHDIARSVVAALEA 232
                 566777888888999999999**********999988765 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   4.9e-23   7.3e-20       1     148 [.      10     178 ..      10     233 .. 0.74

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 4.9e-23
                     TTTSHHHHHHHHHHHHC-T-EEEEE...ET.THHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHH............HH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtal...vR.npeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeeg............ak 79 
                     G+ G +G ++v  ll++g ++v+++    R + +++a+l+a+  +e+v+ dv    ++ +a+kg+d Vv  ++ + +++++              
      KIR65942.1  10 GGAGFIGLHVVPLLLDKG-YRVRIFdnmFRgDRDQVAKLAATGDVELVDQDVRYGGAVHAAMKGCDLVVHLAAVSINKSQAdpyesidinmvgNH 103
                     99***************5.***98644344379*********************************887777555554444455667778888** PP

                     HHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHH...HCCHHHHHHHHHHHHHH....HHSSSEEEEEEE-CEE- CS
  NAD_binding_10  80 nivdaakeagvkRfvlvsaigvgdevpgefgewnk...ellkaylaakraaeell....rasgldwTivrpggLtd 148
                     n+ +aa  +gvkR+v+ s++ v+ + p++++   +   + l +y + kra e+ll    r++gl+w  +r      
      KIR65942.1 104 NVFAAAADHGVKRLVFASSASVYGD-PKKLPMHEDdrlDPLTPYCISKRAGEDLLafyqRSKGLNWIALRFFNVYG 178
                     **********************964.444433332113689*************97776678********877644 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0     5e-16   7.5e-13       2     156 ..       5     181 ..       4     236 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 5e-16
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT....................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre....................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayav 77 
                    ++ +tG+ G +G +++ +l  +g+ v  +++                     + d++   av++++k   +d+vv++AA   + k   ++ ++  +
     KIR65942.1   5 TVFITGGAGFIGLHVVPLLLDKGYRVRIFDNMfrgdrdqvaklaatgdvelvDQDVRYGGAVHAAMKG--CDLVVHLAAV-SINKSQADPYESIDI 97 
                    588**********************9999888899999999999999998888899999999999988..9********7.699************ PP

                    HTHHHHHHHHHHHHCT-E.EEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHH....H-SSEEEEEE-SEESSSS CS
  RmlD_sub_bind  78 naeavealAeaaaavgal.LihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavla....agkkalivRtswvygekg 156
                    n+ + +++ +aaa +g++ L++ S+  V+   kk p +edd+ +Pl+ Y  +K aGE   +     +g +++ +R+  vyg  +
     KIR65942.1  98 NMVGNHNVFAAAADHGVKrLVFASSASVYGDPKKLPMHEDDRLDPLTPYCISKRAGEDLLAFyqrsKGLNWIALRFFNVYGPGQ 181
                    ****************955**********999*************************9885433337789999*******8744 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   2.1e-15   3.1e-12       1     252 [.       6     265 ..       6     279 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 2.1e-15
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      v++tG++G iG ++v  +l+k   +++++++      +   +l + + + +       v  dvr    ++ a++  ++d+v+h AA+  +   +
       KIR65942.1   6 VFITGGAGFIGLHVVPLLLDKG-YRVRIFDNMFRGDRDQVAKLAA-TGDVE------LVDQDVRYGGAVHAAMK--GCDLVVHLAAV-SINKSQ 88 
                      79*************9888865.6899999876555444444432.22223......3458*************..**********9.68999* PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE..............GGGSS--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETTG CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieagvkkvvliSt..............DKAvnPtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlgS 174
                        p+e i+ N++g +nv  aa ++gvk++v+ S+              D   +P   + ++Kr+ e ll  +++++     + ++ Rf NV g 
       KIR65942.1  89 ADPYESIDINMVGNHNVFAAAADHGVKRLVFASSasvygdpkklpmheDDRLDPLTPYCISKRAGEDLLAFYQRSK---GLNWIALRFFNVYGP 179
                      *******************************9975666655555555577899****************9999998...89**********985 PP

                      .......TTSSHHHHHHHHHTTSSEEES.-TT-EEEEE-HHHHHHHHHHHHHH--SS-EEE.E--.-EEEHHHHHHHH......... CS
  Polysacc_synt_2 175 .......rGSviplFkkqikeggpvtvT.dpemtRyfmtieeavqLvlqalalakggeifv.ldmGepvkivdlakalielsgleek 252
                               Svi  F k++k+g+p  +    e    f+ +++ ++ v+ al+  + g++ v    G  ++++ la+ li+ +g++++
       KIR65942.1 180 gqkptayYTSVINHFVKRLKTGQPPIIDgRGEQSMDFIHVHDIARSVVAALEAEQ-GNVPVnIGTGIDTSVATLAEILIKAVGVDVE 265
                      222222247*************8855531334555699*********99987655.55555267899999**********9998765 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   0.00027      0.41       1      26 [.       8      33 ..       8      55 .. 0.87
   2 !   27.6   0.0   9.7e-10   1.4e-06      84     254 ..      69     223 ..      48     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00027
                   EE-TTSHHHHHHHHHHHHHS-.TEEE CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiy 26
                   +TG+ GF+G +++  LL++  +v+i+
     KIR65942.1  8 ITGGAGFIGLHVVPLLLDKGYRVRIF 33
                   8*****************99988886 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 9.7e-10
                    HHHH--EEEE--SS-S.ST..TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHH CS
  NAD_binding_4  84 laeevdviihsaAtvnfde..pykellrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYe 177
                     ++ +d+++h aA    ++  +  e +++N+ G ++v+  a+    +  l++ S+a v+g+ ++                  + +++  +  + Y 
     KIR65942.1  69 AMKGCDLVVHLAAVSINKSqaDPYESIDINMVGNHNVFAAAADHGVK-RLVFASSASVYGDPKK----------------LPMHEDDRLDPLTPYC 147
                    56889*******965433312444689***************98888.9***********9994................34666777778899** PP

                    HHHHHHHHHHHHHHHHH---EEEEEE-EEE--SSST---TTSHHHHHHHHHHHH-EEES-SB---TT--EEEHHHHH CS
  NAD_binding_4 178 qsKalaEklvrearrrsglpvvivRpsiitgesktGwingsdlgirgllgliakgvlpeilgdkeavldlvpvDyva 254
                     sK ++E+l+  ++r++gl+++ +R  +++g  ++  +  ++ +i+ ++   ++g+ p i g+ e+ +d++ v  +a
     KIR65942.1 148 ISKRAGEDLLAFYQRSKGLNWIALRFFNVYGPGQKPTAYYTS-VINHFVKRLKTGQPPIIDGRGEQSMDFIHVHDIA 223
                    *******************************55554555555.6778888889999999999999999998886555 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   5.8e-10   8.7e-07       1     102 [.       6     122 ..       6     135 .. 0.83
   2 ?    1.8   0.0     0.097   1.5e+02     148     199 ..     187     235 ..     183     266 .. 0.64

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 5.8e-10
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S..-SHHHHHHHHST.TEEEES-TT-HHHHHHHHTT-SEEEE---GG............S-HHHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdt..kselakslkeaG.velvkgdlddkeslvealkgvdvvfsvtgfy............skeiedgkk 84 
                 + ++G++G +G +vv  ll++g++vr+       +++++++l++ G velv +d+     +++a+kg d+v    ++             + ++    +
  KIR65942.1   6 VFITGGAGFIGLHVVPLLLDKGYRVRIFDNMFrgDRDQVAKLAATGdVELVDQDVRYGGAVHAAMKGCDLVVHLAAVSinksqadpyesiDINMVGNHN 104
                 5799**********************97433366777888888888699*********************99877766778899997655445555678 PP

                 HHHHHHHHS-SEEEEEE- CS
        NmrA  85 lvdAakeaGvkhfiySsl 102
                 + +Aa+  Gvk+++++s 
  KIR65942.1 105 VFAAAADHGVKRLVFASS 122
                 999************985 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.097
                 -BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHHHHHHHH CS
        NmrA 148 flsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvikilkdprk 199
                 ++s++   +v+ +++++   ++ g g+ ++ ++ +++Di++ v+++l+ ++ 
  KIR65942.1 187 YTSVINH-FVKRLKTGQ-PPIIDGRGEQSMDFI-HVHDIARSVVAALEAEQG 235
                 4443333.444555554.557888999899999.***********9987654 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.2   1.3e-07    0.0002       1     122 [.       4     112 ..       4     126 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.3e-07
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 ++v++tG+++ IG+ ++  l+ +G++v ++d+  +  +  +++l +        ++Dv+  ++  ++  ++ + +++ d++v+ A+++      + s++
  KIR65942.1   4 QTVFITGGAGFIGLHVVPLLLDKGYRVRIFDNMFRGDRDQVAKLAA--------TGDVELVDQDVRYGGAVHAAMKGCDLVVHLAAVS-----INKSQA 89 
                 589****************************998888777777665........567776666667777777777778*********4.....445667 PP

                 HHHHHHHHHTHHHHHHHHHHHHH CS
   adh_short 100 ewervievNltgvflltravlpa 122
                 +  ++i++N++g  ++ +a++++
  KIR65942.1  90 DPYESIDINMVGNHNVFAAAADH 112
                 78889999999999999999887 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4   2.3e-05     0.035       2     136 ..       5     122 ..       4     133 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.3e-05
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 t++itGG+G +Gl+++  l++kg r  ++        + +++++a+l+a+g +ve+v+ Dv    av+a+++ ++        v+h A v+ +     +
  KIR65942.1   5 TVFITGGAGFIGLHVVPLLLDKGYRVRIFDNMF----RGDRDQVAKLAATG-DVELVDQDVRYGGAVHAAMKGCD-------LVVHLAAVSIN-----K 86 
                 679********************7655543333....33455788898877.79999999999999999998886.......47777777543.....2 PP

                 -HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEE CS
          KR 101 taedleqvlapKvkGawnLhelledesldffvlfSS 136
                 +++d  + +   + G +n+  + +d+ ++ +v+ SS
  KIR65942.1  87 SQADPYESIDINMVGNHNVFAAAADHGVKRLVFASS 122
                 333444445555666666666666666666655444 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00017      0.25       5      77 ..      11      80 ..       6      89 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
                     --SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.TTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-S CS
  Sacchrp_dh_NADP  5 GaGsvGqavaellarhfdvdaeitvadrskeklealaaka.lgvrfeaialdaenyeavLaallkegdlvvnls 77
                     GaG++G  v++ll++++ +  ++ + d   ++ +  +ak+ +  ++e +  d+    a + a++k+ dlvv+l+
       KIR65942.1 11 GAGFIGLHVVPLLLDKG-Y--RVRIFDNMFRGDRDQVAKLaATGDVELVDQDVRYGGA-VHAAMKGCDLVVHLA 80
                     67*************97.6..899999875554444444448999*********99*9.99999********98 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0002      0.29      20      75 ..      17      81 ..      16     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0002
                    HHHHHHHHHCTSEEEEE-SSTHHCCCCHHGG.........BTCCEEES-CHHHHTT-SEEEE-S- CS
  UDPG_MGDP_dh_C 20 ldiieeLleegaevkiyDPkvkeeaveaele.........ekgvevvdsleealkgadaivilte 75
                    l+++  Ll++g++v+i+D +++ ++ +  +          +++v++   +  a+kg+d++v l +
      KIR65942.1 17 LHVVPLLLDKGYRVRIFDNMFRGDRDQVAKLaatgdvelvDQDVRYGGAVHAAMKGCDLVVHLAA 81
                    578999*************998888776444789******999****999**********98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 2015.24
//
Query:       KIR65943.1  [L=396]
Description: glucosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-20   71.0   0.0    1.3e-19   70.4   0.0    1.1  1  Glycos_transf_1  Glycosyl transferases group 1
      1e-19   71.5   5.4      1e-19   71.5   5.4    2.3  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    2.6e-18   66.7   0.2    4.5e-18   66.0   0.2    1.4  1  Glyco_trans_1_4  Glycosyl transferases group 1
    1.1e-17   64.5   0.7    1.1e-17   64.5   0.7    2.5  2  Glyco_transf_4   Glycosyltransferase Family 4
      2e-08   34.4   0.0    5.7e-08   32.9   0.0    1.7  2  Glyco_trans_4_2  Glycosyl transferase 4-like
    4.3e-06   27.0   0.0      1e-05   25.8   0.0    1.6  1  Glyco_trans_1_2  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.095   12.4   0.3          1    9.0   0.1    2.3  2  Glyco_transf_5   Starch synthase catalytic domain
      0.099   12.7   0.0       0.23   11.5   0.0    1.6  1  RPN1_C           26S proteasome non-ATPase regulatory subunit


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.0   5.8e-23   1.3e-19      10     168 ..     209     366 ..     202     369 .. 0.91

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 5.8e-23
                      TTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSB CS
  Glycos_transf_1  10 gknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisE 103
                      g+ ++ ++i+s+g + +  +   l++a++++ ++ +p+++++i+G   + + + k+a+el++ + vi +g v+  ++++++ +ad++++  +  
       KIR65943.1 209 GI-GDAPLIVSLGHVIPLRDRIALVEALPTILAK-HPDTRVLIIG-RVYYDAYAKRAAELGVAHAVISTGVVPSAEVPAYFAAADVVAHDLQGG 299
                      55.6889999**********************99.**********.77889999999************************************* PP

                      SS-HHHHHHHHTT--EEEET..TTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHH CS
  Glycos_transf_1 104 gfGivllEAmaaglpviasn..aggpaevvkdgetGllvkpnnaealaeairklledeelrerlgen 168
                      gfG++ lEAmaag ++i +   +  pa  ++++e+ +l  p ++++la+a+++l +d+++re + ++
       KIR65943.1 300 GFGTASLEAMAAGRATIGTVteTNFPAVHLRNWENFVLARPDDPADLADAVIRLFDDPQEREWIAKR 366
                      *****************776568999999*****98888888****************998877666 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   5.4   4.6e-23     1e-19       1     158 [.      15     188 ..      15     190 .. 0.78
   2 ?    1.3   2.8      0.19   4.3e+02       5      90 ..     253     340 ..     251     392 .. 0.73

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 4.6e-23
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgapeleedgvrvhrlpvprrps...........pladlaalralrrllrqrrerpdvvhahs.p 82 
                      gG++   a+la+++aa+GheV vlt+a++++++e+e+dg rv+rlp+ + p+            la++  lr++ rll   ++ pdv+h h+ +
       KIR65943.1  15 GGSSHLSAALAERYAAAGHEVLVLTAAYQGAPDEEERDGYRVVRLPAMPMPKlglsidfdmafALARPGNLRRVSRLL--TEFAPDVIHQHGqF 106
                      68888889**************************************99998433334344444555566779999999..***********954 PP

  Glyco_trans_4_4  83 t..aglaarlarrrrgiplvvtlhgll..lrrgsgavrrly.ralerrllrradavlvvseaeaeelra..lgvpadrvvvvp 158
                         +++ +  ar r+++p+++++h++l  +++  +a+ rl+ r l r l+rr+    v+ +++a++++a  +g+  ++++++p
       KIR65943.1 107 FdlSWISGQYAR-RHRTPVLLSIHTRLesPDPKYAALFRLLdRFLVRPLIRRFHPRYVIMDELAARYCAqrYGATTADFEYIP 188
                      36799999****.***********97633334455666666566688999998888888877777666534666666666666 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.19
  Glyco_trans_4_4   5 ryvaelaraLaarGheVtvlt....papapgapeleedgvrvhrlpvprrpspladlaalralrrll.rqrrerpdvvhahsptaglaarl 90 
                      +y  + a++ a++G+   v+     p  a+++    ++ v  h l  +    ++a+l+a++a r+++  + + ++  vh+ ++    +ar 
       KIR65943.1 253 VYYDAYAKRAAELGVAHAVIStgvvP-SAEVPAYFAAADVVAHDLQGGGF--GTASLEAMAAGRATIgTVTETNFPAVHLRNWENFVLARP 340
                      56667788888888888888756533.33334447888888888888777..478999999999999888999999999999988777764 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.2     2e-21   4.5e-18       3     134 .]     215     356 ..     213     356 .. 0.81

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 2e-21
                      EEEEES---GG.GTHHHHHHHHHHHH.H.H.EEEEEES---..HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--..---SHHHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkk.d.vrlvivGdgprpeeleelaa..gleerveftGfv..edlaellaaadvfvaPs..egfglkll 88 
                       i+ +G + +       l+ea+p +++k +  r++i+G+   + ++ ++aa  g+++ v+ tG v  +++++++aaadv+   +   gfg + l
       KIR65943.1 215 LIVSLGHVIP-LRDRIALVEALPTILAKhPdTRVLIIGRVYYD-AYAKRAAelGVAHAVISTGVVpsAEVPAYFAAADVVAHDLqgGGFGTASL 306
                      5666666644.33444699******988536*******55444.45555544999999*******8778***************6559****** PP

                      HHHHTT-EEEE-TGG.GTTT--..T.TSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  89 EamaaglpvVatdvg.giaevv..g.engllvppgdpealaeailrLled 134
                      Eamaag++++ t ++  +++v   + en +l+ p+dp++la+a++rL++d
       KIR65943.1 307 EAMAAGRATIGTVTEtNFPAVHlrNwENFVLARPDDPADLADAVIRLFDD 356
                      ************88646888778634777999***************987 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.7     5e-21   1.1e-17       2     170 .]      15     195 ..      14     195 .. 0.77
   2 ?    0.5   0.3      0.24   5.4e+02      46      46 ..     341     341 ..     252     388 .. 0.57

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 5e-21
  Glyco_transf_4   2 GGverhvleLaraLarrGheVtvvtpgddgpleeev...elvvrvprvplpllk........rllrslaflrrlrrllkrekpDvv..Hahspaa 83 
                     GG       La++ a++GheV v+t +++g+++ee+   ++vvr+p+ p+p+l+         +l ++ +lrr+ rll ++ pDv+  H +++  
      KIR65943.1  15 GGSSHLSAALAERYAAAGHEVLVLTAAYQGAPDEEErdgYRVVRLPAMPMPKLGlsidfdmaFALARPGNLRRVSRLLTEFAPDVIhqHGQFFDL 109
                     777777889***************************55555555555555444422211111233466668999************666667777 PP

  Glyco_transf_4  84 lgaallalrrrlgiplVltvHglyekrllkarlkplsrllralerrllrrad.rviavSeatadelrerygvppekitVipnGvDler 170
                      + ++ ++rr ++ p+ l++H+  e ++ +++  +++ l r l r l+rr + r +   e +a++ ++ryg   ++ + ip +v ++r
      KIR65943.1 110 SWISGQYARR-HRTPVLLSIHTRLE-SPDPKYAALFRLLDRFLVRPLIRRFHpRYVIMDELAARYCAQRYGATTADFEYIPVAVEPSR 195
                     8999999998.*************6.55555666666666666666666666699999***********************9998875 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.24
  Glyco_transf_4  46 v 46 
                      
      KIR65943.1 341 D 341
                     1 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   2.6e-11   5.7e-08      16     126 ..      24     148 ..       8     158 .. 0.73
   2 ?   -3.0   0.0       3.1   6.9e+03      70      91 ..     363     384 ..     361     392 .. 0.61

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.6e-11
  Glyco_trans_4_2  16 lakeLakrgyeVhvitp.kkgakdeleaegihvhrl......kvd..rkg..pleyl...kafklkklikkikPDvvhahya.kpy.gllgsla 93 
                      la+  a++g+eV v+t   +ga de+e++g++v rl      k++  + +  ++ ++   +++++ +l++++ PDv+h+h    ++ ++ g+  
       KIR65943.1  24 LAERYAAAGHEVLVLTAaYQGAPDEEERDGYRVVRLpampmpKLGlsIDFdmAFALArpgNLRRVSRLLTEFAPDVIHQHGQfFDLsWISGQY- 116
                      46666778*********888889999**********666555222543333233333333469*****************9766775777777. PP

  Glyco_trans_4_2  94 arlsgvipvvlsvwGldvlkfpkksk..lkklllk 126
                      ar+++  pv+ls++    l++p+++   l++ll +
       KIR65943.1 117 ARRHR-TPVLLSIH--TRLESPDPKYaaLFRLLDR 148
                      69999.********..4488888885556665554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.1
  Glyco_trans_4_2  70 ikkikPDvvhahyakpygllgs 91 
                      i+k++ D+v+ h + ++++   
       KIR65943.1 363 IAKRQRDLVYSHFTLDVVTRQH 384
                      5667777777777766654333 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   4.6e-09     1e-05      13      90 ..     303     384 ..     288     386 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 4.6e-09
  Glyco_trans_1_2  13 lrlfEaaacGafaltdda.eglee.lftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydhraeql 90 
                      +  +Ea+a+G+  + + + + ++  ++++ + ++l++  d+++la+++ +l ++p+er+ ia++ r  v +++t+d   +q 
       KIR65943.1 303 TASLEAMAAGRATIGTVTeTNFPAvHLRNWENFVLARpdDPADLADAVIRLFDDPQEREWIAKRQRDLVYSHFTLDVVTRQH 384
                      5669***********9888555543688888899999*************************************99888775 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00045         1      16      55 ..      15      55 ..       9      78 .. 0.78
   2 ?    0.5   0.0      0.18     4e+02     129     170 ..      91     129 ..      71     133 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00045
  Glyco_transf_5 16 GGLadvvgaLpkaLaklghdvrvilPry.gaikeekkelee 55
                    GG +  ++aL++  a++gh+v v++ +y ga +ee+++  +
      KIR65943.1 15 GGSSHLSAALAERYAAAGHEVLVLTAAYqGAPDEEERDGYR 55
                    666677899*******************5555555444444 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.18
  Glyco_transf_5 129 l..gwkpdvihahDWhtalvpallkelykerglfkkiktvftiH 170
                     l  ++ pdvih h     l   ++  +y+     ++++++++iH
      KIR65943.1  91 LltEFAPDVIHQHGQFFDLS--WISGQYA---RRHRTPVLLSIH 129
                     244568*****998665555..2222232...234477777777 PP

>> RPN1_C  26S proteasome non-ATPase regulatory subunit RPN1 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0001      0.23      16      46 ..     120     150 ..     111     152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
      RPN1_C  16 httPVlLaageRAELateeYiplssvLEgiv 46 
                 h tPVlL+   R E  + +Y +l ++L+ + 
  KIR65943.1 120 HRTPVLLSIHTRLESPDPKYAALFRLLDRFL 150
                 9**********************99999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3115.18
//
Query:       KIR65944.1  [L=208]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-10   40.0   9.6    8.6e-09   35.0   2.1    3.0  2  Hexapep_2  Hexapeptide repeat of succinyl-transferase
    2.2e-09   36.7   7.4    5.9e-06   25.8   2.3    3.1  2  Hexapep    Bacterial transferase hexapeptide (six repeats)


Domain annotation for each model (and alignments):
>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   1.0   0.00052       4.6       5      22 ..      56      77 ..      52      87 .. 0.51
   2 !   35.0   2.1   9.6e-13   8.6e-09       1      33 [.     112     146 ..     112     147 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00052
                -TT-EE-TT-EE....SEEE-T CS
   Hexapep_2  5 GdnCliGanagi....GvslGd 22
                G+ C iG n +     G ++Gd
  KIR65944.1 56 GEHCWIGENTVLdasgGLEIGD 77
                6666666666644455455554 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 9.6e-13
                 .EEE-TT-EE-TT-EE..SEEE-TT-EE-TT-EE- CS
   Hexapep_2   1 pviIGdnCliGanagi..GvslGdncvvgaGvvit 33 
                 pv+IG+ C+iG n++i  Gv++Gd ++v + +v+t
  KIR65944.1 112 PVRIGKGCFIGGNSVImmGVTIGDCATVNPLSVVT 146
                 8**************889******99998877777 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.2     2e-05      0.18       1      29 [.      52      82 ..      52      88 .. 0.79
   2 !   25.8   2.3   6.6e-10   5.9e-06       2      36 .]     113     147 ..     112     147 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2e-05
                TEEEETTEEE-TTEEE..ETTEEE-TTEEEE CS
     Hexapep  1 stvIGsnvlIgpfavi..ggnVkIGdnvkIg 29
                ++v G++++Ig ++v+   g+ +IGd++ Ig
  KIR65944.1 52 NLVMGEHCWIGENTVLdaSGGLEIGDHTSIG 82
                5799*********999445788888888887 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 6.6e-10
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 ++IG++++Ig ++vi+ +V+IGd +++ + +v+++
  KIR65944.1 113 VRIGKGCFIGGNSVIMMGVTIGDCATVNPLSVVTK 147
                 78***************************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1397.99
//
Query:       KIR65945.1  [L=79]
Description: acyl carrier protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-05   23.7   0.4      7e-05   23.1   0.4    1.4  1  PP-binding     Phosphopantetheine attachment site
     0.0033   17.6   0.0     0.0044   17.2   0.0    1.3  1  LytR_cpsA_psr  Cell envelope-related transcriptional attenuat
  ------ inclusion threshold ------
      0.025   14.8   0.1      0.028   14.6   0.1    1.1  1  PP-binding_2   Acyl-carrier


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.4   1.2e-08     7e-05       2      59 ..       6      64 ..       5      72 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.2e-08
  PP-binding  2 klrelvaevlgvpleeidpdtdlfdlG.lDSllavellaaleeefgveiplsdlfehpt 59
                +lr ++ ++l++p+     + + +     DSl  ++l+aa+e+ef+v+++ +++ + ++
  KIR65945.1  6 RLRGVFVDALELPEGTDVENLTYRGIEqWDSLGHMTLVAAIEDEFDVQLDTEQVIDMSS 64
                67888888888876664466667775558************************999877 PP

>> LytR_cpsA_psr  Cell envelope-related transcriptional attenuator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   7.4e-07    0.0044      40      91 ..      28      78 ..       7      79 .] 0.83

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 7.4e-07
                   --EES-TTTTT-HHHHHHHHHHHHTS---EEEEE-HHHHHHHHHHHT---B- CS
  LytR_cpsA_psr 40 ekkinsayalggaellvktvekllginidyYvevdfegfaklvdalgGvevd 91
                   ++ i++  +lg   +lv ++e+ ++++ d   ++d+++f+ + d l G+ vd
     KIR65945.1 28 YRGIEQWDSLG-HMTLVAAIEDEFDVQLDTEQVIDMSSFKVALDMLRGLSVD 78
                   55566666666.88999********************************997 PP

>> PP-binding_2  Acyl-carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   4.7e-06     0.028      32      75 ..      20      63 ..       8      75 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.7e-06
  PP-binding_2 32 sskleelrtredrlwdgldtvefvedveelfdvivsdevadnfe 75
                   + +e+l  r    wd+l  + +v  +e+ fdv +  e + ++ 
    KIR65945.1 20 GTDVENLTYRGIEQWDSLGHMTLVAAIEDEFDVQLDTEQVIDMS 63
                  5778999999999*********************9988765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.29s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 557.20
//
Query:       KIR65946.1  [L=251]
Description: 3-oxoacyl-ACP reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-60  203.7  14.3    3.9e-60  203.3  14.3    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    6.2e-51  172.6   7.5    8.1e-51  172.3   7.5    1.1  1  adh_short        short chain dehydrogenase
      5e-13   49.4  11.9    2.5e-12   47.1  11.9    1.9  1  KR               KR domain
    3.2e-05   23.5   3.6      9e-05   22.0   3.5    1.8  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0021   18.1   0.2     0.0046   17.0   0.2    1.6  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
     0.0086   16.6   0.7      0.018   15.6   0.5    1.8  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.014   15.4   4.7      0.014   15.4   4.7    2.0  2  ADH_zinc_N       Zinc-binding dehydrogenase
      0.041   14.1   0.3      0.085   13.1   0.3    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.073   13.8   0.3      0.073   13.8   0.3    3.7  3  HEAT_PBS         PBS lyase HEAT-like repeat
       0.61   10.5   7.0       0.25   11.8   2.9    2.5  2  HEAT_2           HEAT repeats
        4.9    7.0  12.1        6.5    6.6   0.9    3.3  3  Robl_LC7         Roadblock/LC7 domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.3  14.3   2.4e-63   3.9e-60       3     233 ..      15     249 ..      11     250 .. 0.97

  Alignments for each domain:
  == domain 1  score: 203.3 bits;  conditional E-value: 2.4e-63
                   TTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdral 99 
                    +gIG a+A+ala++Ga+vv+t ++ ++   +e++a+e+g + l +DV+d ++v a+v++v++ +g+lD+lv nagi+++  g +  +  ++++r+l
    KIR65946.1  15 TRGIGLATARALAQAGATVVVTGRDADR---AEAVAKEFGGHGLGLDVADFDAVGATVKQVTAAHGGLDVLVANAGIMES--GLLGMLRADDVRRTL 106
                   59*********************99998...9************************************************..999999********* PP

                   HHHTHHHHHHHHHHHHHCTSC...........CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTH CS
  adh_short_C2 100 dvnlyslfllakaalplmkeg...........gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgf 185
                   dvn+ ++++ ++aa ++m+++           gsiv l+sv ++ + +++++y+a+Kaa+ al+r++A+elg +giRvNav+pg+i+T+++++++  
    KIR65946.1 107 DVNVAGAVAAVQAAGRAMARKrrsadgterrgGSIVLLASVVGTYGAAGQSVYAASKAAVAALARSAARELGGRGIRVNAVAPGVIRTDLTASLP-- 201
                   ****************8877668899999999**************************************************************9.. PP

                   HHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 186 delleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                    e+l++ +a a lgrlg+p+eva+++ fLa d+a+y+tGq+l vDgGl
    KIR65946.1 202 AEVLDRQAAAAALGRLGDPDEVADVIRFLAGDAARYVTGQVLGVDGGL 249
                   99*********************************************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.3   7.5     5e-54   8.1e-51       2     191 ..       8     201 ..       7     204 .. 0.98

  Alignments for each domain:
  == domain 1  score: 172.3 bits;  conditional E-value: 5e-54
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 v+lvtG+++GIG+a+a++la++Ga+vvv++r ++++e+vake++      + + +Dv+d ++v a+v+++ + +g+ldvLv+NAGi +sg    l +++
  KIR65946.1   8 VALVTGGTRGIGLATARALAQAGATVVVTGRDADRAEAVAKEFGG-----HGLGLDVADFDAVGATVKQVTAAHGGLDVLVANAGIMESGLLGMLRADD 101
                 89******************************************6.....89*********************************************** PP

                 HHHHHHHHTHHHHHHHHHHHHHHH.........HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short 101 wervievNltgvflltravlpaml.........kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                 ++r+++vN+ g++ +++a+ +am          ++++G+Iv  +Sv+g ++ ag+++Y+AsKaava+l+rs+a+el  +girvnavaPG+++Td++++l
  KIR65946.1 102 VRRTLDVNVAGAVAAVQAAGRAMArkrrsadgtERRGGSIVLLASVVGTYGAAGQSVYAASKAAVAALARSAARELGGRGIRVNAVAPGVIRTDLTASL 200
                 *******************************999*************************************************************9987 PP

                 C CS
   adh_short 191 r 191
                  
  KIR65946.1 201 P 201
                 5 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1  11.9   1.5e-15   2.5e-12       3     165 ..       9     175 ..       8     188 .. 0.85

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 1.5e-15
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                  l+tGG+ g+Gl++ar la+ ga+ +v+++R+a   ++++a  +e+  +g     + +Dv+d dav a++++++a ++ +   +  Ag+++ +ll  + 
  KIR65946.1   9 ALVTGGTRGIGLATARALAQAGAT-VVVTGRDA---DRAEAVAKEFGGHG-----LGLDVADFDAVGATVKQVTAAHGGLDVLVANAGIMESGLLGMLR 98 
                 59********************85.889****3...34444566666655.....679***************************************** PP

                 HHHHHHHHTTTTHHHHHHHHHTTT.............S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGawnLhelled.............esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrs 165
                 a+d+++ l   v+Ga    ++  +             ++   +vl++S+ g++g+agq+ Yaa  a + ala++ ++
  KIR65946.1  99 ADDVRRTLDVNVAGAVAAVQAAGRamarkrrsadgteRRGGSIVLLASVVGTYGAAGQSVYAASKAAVAALARSAAR 175
                 **************9988877665566678666666666779******************************97654 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   3.5   5.5e-08     9e-05       1     165 [.       9     182 ..       9     222 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 5.5e-08
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC...EEEE--TT-HHHHHHHHHHH.....T-SEEEE--S..---H..HHHHHSHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl...elveldltdrsalerlfkee.....qpdavihlAa..vggv..aassedpadf 87 
                 +lVtG+t  iG a+++al+++g +v++  r+ ++ +    +     +   ld+ d +a+ + +k++     + d+ +  A+  ++g   + +++d  ++
  KIR65946.1   9 ALVTGGTRGIGLATARALAQAGATVVVTGRDADRAEAV-AK-EfggHGLGLDVADFDAVGATVKQVtaahgGLDVLVANAGimESGLlgMLRADDVRRT 105
                 59********************9999988884333322.22.246899999999999666666655300045565555555444442225567888889 PP

                 HHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEE CS
   Epimerase  88 ieknlqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnai 165
                 ++ n++g++  ++aa +a +++   +  +e  G +      +++ t   + +s Yaa+K+a+  l++++a++ g + i
  KIR65946.1 106 LDVNVAGAVAAVQAAGRAMARKRRSADGTERRGGSIVL-LASVVGTYGAAGQSVYAASKAAVAALARSAARELGGRGI 182
                 99**************9999988888887888855553.6777766666999*****************999875544 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   2.8e-06    0.0046      23      59 ..      18      53 ..       2      90 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.8e-06
                  HHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.E CS
  Shikimate_DH 23 maelvakhLlakgvkkvvvaNRtlerakelaeelkge 59
                  ++  +a++L+++g++ vvv++R+ +ra+++a+e++g+
    KIR65946.1 18 IGLATARALAQAGAT-VVVTGRDADRAEAVAKEFGGH 53
                  45667999*****99.******************887 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.5   1.1e-05     0.018       6      58 ..      14      74 ..       7     111 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.1e-05
                   TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.............-EEECECHHHH CS
  F420_oxidored  6 GaGnmgealasgllaagaqpheivvansrnpekaeelaeelg.............vkvtavdneea 58
                   G+  +g a a+ l++ag     +vv+  r+ ++ae+ a+e+g             v++t  ++ +a
     KIR65946.1 14 GTRGIGLATARALAQAG---ATVVVT-GRDADRAEAVAKEFGghglgldvadfdaVGATV-KQVTA 74
                   44457888899******...999955.**************9888777777766655555.44444 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   4.7   8.6e-06     0.014       1      67 [.      17      87 ..      17      93 .. 0.82
   2 ?   -1.7   0.1       1.6   2.6e+03      16      21 ..     183     188 ..     152     237 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.6e-06
                HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TT.ESEEEETTTC.HHHHHHHHHTT.TSSEEEEEESSC CS
  ADH_zinc_N  1 gvGlaavqlAkalGaeviavdsseeklelakk.lG.adevinykea.dlverikeltg.gegvdvvfecvG 67
                g+Gla+  +++ +Ga+v+++ ++++++e ++k +G     ++  +   + + +k+ t  ++g+dv +  +G
  KIR65946.1 17 GIGLATARALAQAGATVVVTGRDADRAEAVAKeFGgHGLGLDVADFdAVGATVKQVTAaHGGLDVLVANAG 87
                8**************************76655599666677777776788889999976779999887777 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.6
                 EEEEEE CS
  ADH_zinc_N  16 eviavd 21 
                 +v av+
  KIR65946.1 183 RVNAVA 188
                 333333 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   5.2e-05     0.085       8      74 ..      17      83 ..      10     130 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.2e-05
                     HHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS...SEEE CS
  Sacchrp_dh_NADP  8 svGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg...dlvv 74
                     ++G a+a+ la+ +     ++v +r+ +++ea+a++  g  +     d + + a+++++ + +   d++v
       KIR65946.1 17 GIGLATARALAQAGAT---VVVTGRDADRAEAVAKEFGGHGLGLDVADFDAVGATVKQVTAAHgglDVLV 83
                     7999*********986...***************998777777777777777776666655445565555 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.4       0.9   1.5e+03       5      14 ..      22      31 ..      20      47 .. 0.69
   2 ?   -0.6   1.0         2   3.2e+03       4      11 ..     164     171 ..     161     188 .. 0.69
   3 ?   13.8   0.3   4.5e-05     0.073       2      24 ..     207     230 ..     206     233 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.9
                HHHHHHHCTS CS
    HEAT_PBS  5 AakaLgqlgd 14
                 a+aL+q g+
  KIR65946.1 22 TARALAQAGA 31
                699***9988 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2
                 HHHHHHHH CS
    HEAT_PBS   4 aAakaLgq 11 
                 aA+ aL++
  KIR65946.1 164 AAVAALAR 171
                 45555554 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 4.5e-05
                 HHHHHHHHHHCTS.GGGHHHHHHH CS
    HEAT_PBS   2 RraAakaLgqlgd.eeaipaLlea 24 
                 R aAa aLg+lgd +e++++++ +
  KIR65946.1 207 RQAAAAALGRLGDpDEVADVIRFL 230
                 89***********88888887765 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       8.3   1.4e+04      50      59 ..      21      30 ..      16      36 .. 0.63
   2 ?   11.8   2.9   0.00015      0.25      48      80 ..     207     239 ..     159     243 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 8.3
      HEAT_2 50 aaaeaLgaig 59
                a a+aL++ g
  KIR65946.1 21 ATARALAQAG 30
                5555655544 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00015
      HEAT_2  48 RraaaeaLgaigdpealpaLkellddddddvvR 80 
                 R+aaa aLg++gdp+ ++   + l+ d  ++v 
  KIR65946.1 207 RQAAAAALGRLGDPDEVADVIRFLAGDAARYVT 239
                 899999999999999999999988888888775 PP

>> Robl_LC7  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.9   3.1e+03      34      55 ..      58      79 ..      53      91 .. 0.72
   2 ?    6.6   0.9     0.004       6.5      31      62 ..     100     132 ..      82     136 .. 0.84
   3 ?    6.5   1.0    0.0043         7      31      63 ..     149     181 ..     142     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.9
                SSS-HHHHHHHHHHHHHHHHHH CS
    Robl_LC7 34 dnddadqlAalasgllsaakaa 55
                d  d d ++a+++++++a  ++
  KIR65946.1 58 DVADFDAVGATVKQVTAAHGGL 79
                5566677888888888776554 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.004
                 CCSSSS-HHHHHHHHHHHHHHHHHHHHHCT.SS CS
    Robl_LC7  31 stldnddadqlAalasgllsaakaaarelg.eg 62 
                  +++++  + +A +++++++a++a+ar+ + ++
  KIR65946.1 100 DDVRRTLDVNVAGAVAAVQAAGRAMARKRRsAD 132
                 578899999******************998433 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0043
                 CCSSSS-HHHHHHHHHHHHHHHHHHHHHCTSSS CS
    Robl_LC7  31 stldnddadqlAalasgllsaakaaarelgege 63 
                  t++   + ++Aa  ++++++a++aarelg+ +
  KIR65946.1 149 GTYGAAGQSVYAASKAAVAALARSAARELGGRG 181
                 5667777789*******************9544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1733.45
//
Query:       KIR65947.1  [L=473]
Description: AMP-dependent acyl-CoA synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-47  162.0   0.0    2.4e-47  161.5   0.0    1.2  1  AMP-binding  AMP-binding enzyme
  ------ inclusion threshold ------
      0.019   15.2   0.9       0.31   11.3   0.0    2.6  2  GGDEF_2      GGDEF-like domain
      0.047   13.7   0.0       0.18   11.8   0.0    2.0  1  CbiG_N       Cobalamin synthesis G N-terminal


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   0.0     4e-51   2.4e-47      56     418 ..      49     385 ..      23     389 .. 0.80

  Alignments for each domain:
  == domain 1  score: 161.5 bits;  conditional E-value: 4e-51
                  SSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCC CS
  AMP-binding  56 nspewvvallailkaGavvvplnptltaeelayiledseakvliatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeee 153
                  +s+  v+ + ++l+a   v+ l+p+l ++ la  ++   + v++       l++  + a+  e++     +d de+l   ++ e++ ++        +
   KIR65947.1  49 TSVPAVLRYAGALRAQRPVALLDPALDPAVLADFVRRFSPAVVV-G-----LAEGGAGADPGERPGDYRAVD-DEVLGPVWVRERA-CA--------D 130
                  56666666778888888888888888888888888888888888.2.....122222222234555555555.3333332333322.22........1 PP

                  CS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHH CS
  AMP-binding 154 eelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpkllleliek 251
                    +   dla+++ TSG+TG PK V ls +++ +n+a+++  +   +++d+v  + lpl+ +fg+ + l+ +l++Gatv ++++     ++ ++++++ 
   KIR65947.1 131 --QPHPDLAVLLATSGSTGDPKFVRLSRAAVESNAAAIA--RVLAIGPDEVAPTSLPLYYSFGM-SVLNSHLAAGATVLVVDGGVL--AREFWQAVSM 221
                  ..22359***************************99974..44667899**************8.*****************9999..34577***** PP

                  HT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC...EEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TT CS
  AMP-binding 252 lkvtviagvPrvlealle.sgalkaakkakdlsslrlvllggeplspellrffralfge...evlegYGlTEttgvvtvlpleedkkklgsvGkplpg 345
                  +++t +agvP  +e+l +   +++      + + lr++  +g++l+ e++ +f+a+  e   +++ ++G+TE+++ +++lp +    ++gsvG++lpg
   KIR65947.1 222 YGATSLAGVPHNYEMLHRiRWSPA------KYPTLRTLTQAGGKLRDETILAFHARIAEtggRFHVMWGCTEAAPRMSTLPADALPDRVGSVGPALPG 313
                  ****************66443344......5689***888****************9999*****************88776777778********** PP

                  EEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEET.CCEEEEEEEEEEETTSEEEEEEECCC CS
  AMP-binding 346 vevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafdse.grwlrTGDlgrldedGyleivgRkkd 418
                      ++ +++ e  ++g++Gel+ rgp+vm+gY    +a   + d e g+ lrTGDlg ld+dG +++ gR+k 
   KIR65947.1 314 GSFTVLGPDGAETDRPGVVGELVYRGPNVMMGYAES-AADLARGD-EqGGVLRTGDLGCLDADGFVWLRGRLKR 385
                  **********************************76.44444444.4477*********************996 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.061   3.6e+02      38      93 ..      25      94 ..       9     104 .. 0.67
   2 ?   11.3   0.0   5.3e-05      0.31      41      86 ..     399     443 ..     392     452 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.061
     GGDEF_2 38 lraleealral..gpdalvavrgd.rlvlllpaedeedae............allerlarrlgglsvriGi 93
                ++++ ++++a+   p+ +v+ r++ ++ ++l+ +++  a+            a+l+++ rr+++  v++G+
  KIR65947.1 25 AAEVGRHAAAYagFPPGVVFARSGtSVPAVLRYAGALRAQrpvalldpaldpAVLADFVRRFSP-AVVVGL 94
                5556555555545444555444443888999877765555556677777778899999999998.888876 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 5.3e-05
     GGDEF_2  41 leealralgpdalvavrgdrlvlllpaedeedaeallerlarrlgg 86 
                 +ee++r++  ++++++  dr+v+++ + +++ a+al+ rla+rl+ 
  KIR65947.1 399 IEELARDQ-GPVVAVSGPDRVVVFVEGGTDDGARALAGRLAERLRL 443
                 55555554.688889999****************999999999876 PP

>> CbiG_N  Cobalamin synthesis G N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.1e-05      0.18      37      72 ..     407     442 ..     392     445 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.1e-05
                 -EEEEE-TT--EEEEEE-TT.TTHHHHHHHHHHHTT CS
      CbiG_N  37 paVvvvdeagrfvisllsGhlggAnelAeeiaallg 72 
                  +Vv+v+   r+v+ + +G   gA +lA ++a+ l+
  KIR65947.1 407 GPVVAVSGPDRVVVFVEGGTDDGARALAGRLAERLR 442
                 46*******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3393.46
//
Query:       KIR65948.1  [L=349]
Description: acyl-protein synthetase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-44  151.0   0.0    5.1e-44  150.8   0.0    1.0  1  LuxE         Acyl-protein synthetase, LuxE
  ------ inclusion threshold ------
      0.057   12.0   0.2       0.13   10.9   0.2    1.7  1  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> LuxE  Acyl-protein synthetase, LuxE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.8   0.0   5.7e-48   5.1e-44      37     373 ..      24     347 ..       4     349 .] 0.86

  Alignments for each domain:
  == domain 1  score: 150.8 bits;  conditional E-value: 5.7e-48
        LuxE  37 vnhykhneeyrky.cqknkvddlvtegevddiPviPvsvfkaigtkllsvsedeikaklqssatsGlkstvlldklsierllravarvmkevlspkdrq 134
                  +h  h+ ey +       +    ++  v+d+P +Pv +fk   + l s+ +de+   l+ss+t+G  s++ ld+ ++  + + ++ ++  v + k+ +
  KIR65948.1  24 EHHRAHSPEYARLlASLGHLPGRRYD-RVADLPWLPVRLFKH--HVLKSIGDDEVFKVLTSSGTTGDVSRIYLDREAAGVQQKMLSATLSAVIGTKRLP 119
                 35666777775541445555566667.9**************..******************************************************* PP

        LuxE 135 ielvdldPdrfnatnlgakivavkvellyastskytvdeerpsapleflekklvellrikasekdliliGfiyllyqtvyktlkdknisfqldknlqvi 233
                 + lvd      n t + a+ + v++ +++     +++de++   p +  ++ +      +  +++++++Gf+++ +  +y+    ++  f l  +  +i
  KIR65948.1 120 MLLVDTKALFKNRTSFSARGAGVLGLMNFGRDHTFVLDEQERPDP-DA-VRDFL----GRHGDQPFLIFGFTFMTWLYLYELA--REHRFDLSNG-ILI 209
                 *******************************99999998763333.33.34333....345789**********999888544..5567888765.689 PP

        LuxE 234 tiGGWkklekekldkidfnrdladvlnlsiddvvdiygfteqvelntpdfkdel.krkrvysdviirdeetlkvvgdGkvGlleyvdalstsyPafvvl 331
                 + GGWkkl    +d  +f r +    +l    + + yg++eq++  + +  d+       ++dvi+rd++t   v+ G +G+++ v+++++syP++++l
  KIR65948.1 210 HSGGWKKLVDRAVDNAEFRRRFTADTGL--RRIHNFYGMVEQIGTTFLEGPDGGgLYCPEFADVIVRDPHTWAEVPVGTPGVVQVVSTMPRSYPGHLLL 306
                 ********************99887776..57999*********998888776514667899************************************* PP

        LuxE 332 tddlGvieeslcegqkaGklvkvlrrvkkaevkGcadvlsek 373
                 t+d Gv++    +g  +Gk++ +l+r  +ae +Gc+d+++e+
  KIR65948.1 307 TEDRGVVHGVD-DGAWPGKRFSILGRLPRAEARGCSDTFAEA 347
                 ********966.*************************99886 PP

>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   1.4e-05      0.13     296     369 ..     224     292 ..      21     300 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.4e-05
                  BHHHHHHHHHHHTC.EEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-T.TEEEEEE-TTTSCBEETTSEEEEEE CS
  AMP-binding 296 spellrffralfge.evlegYGlTEttgvvtvlpleedkkklgsvGkplp.gvevkivDeetgepvpdgeeGellv 369
                  ++e  r+f a +g  ++++ YG+ E  g ++ l+ ++     g  G   p  ++v + D++t  +vp g++G + v
   KIR65948.1 224 NAEFRRRFTADTGLrRIHNFYGMVEQIGTTF-LEGPDG----G--GLYCPeFADVIVRDPHTWAEVPVGTPGVVQV 292
                  4555566666655589************998.664333....5..8999989********************8755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2402.14
//
Query:       KIR65949.1  [L=412]
Description: gamma-glutamyl phosphate reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-35  121.9   0.0    1.6e-34  119.7   0.0    1.8  1  LuxC      Acyl-CoA reductase (LuxC)


Domain annotation for each model (and alignments):
>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.0   8.7e-39   1.6e-34      87     404 ..      90     405 ..      81     406 .. 0.82

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 8.7e-39
        LuxC  87 aqprglvlhvlsgNvpllpvmsilqglLvknvnllkvSssdpflaaallksladvdenh.tladslsvvyfksgdtkleeeivqnaDvvvawGgeeaik 184
                 ++prglv+hv ++Nv ++ v+s + ++L++n+n++++Ss + ++a a+l  l d  ++  +++++   +   + d+++   ++++aD +v+wGg+ ++ 
  KIR65949.1  90 RFPRGLVFHVPPANVDTIFVYSWALSALAGNANVVRISSRSAGAADAVLDALDDTLADAdDVVRQTQRMVTYGRDDAVTAALSAAADLRVIWGGDRSVG 188
                 79***********************************************9998875554455555544445588999********************** PP

        LuxC 185 aise.klkpgkqlikfGakvSfavvdke...aleeealdkaaeraAkDiivfdQqAClspqvvfvekddkieidefaeaLaaaLekrarilpkaklded 279
                  i+  +l+p+++++ f  + Sf v++ +   a +e + d+aa  + +D+  fdQ AC+sp++v+   +d ++ + +   L   L++  ++l    ++ d
  KIR65949.1 189 EIRRhPLAPHARDLTFPDRSSFTVIGAAgwlAAAEAERDAAALGLYNDSYWFDQAACASPRTVYWV-GDPATTEAARADL---LARLRTVLDGKRPEVD 283
                 ****9*********************97322334777777888889******************99.5588888888888...999999********** PP

        LuxC 280 eaakisskraelklkylladekkvvsskdqkwtvllseeq....eelnePl.nrtvnvkavdsledvvryvtenrtlQtvgl.avnesrleelarklal 372
                 +a +++++ a     y la e +v +  + ++  l   e      +  + l   t    + dsl d++++v  + + Qtv      + +l  +ar l  
  KIR65949.1 284 AAMAVEKRVAT----YGLAVE-GVATAIHFDGNDLATVELagpgDIPRRWLgVGTFPQARLDSLADLAPVVVRR-D-QTVTHfGFAADELVAFARALGG 375
                 ******99999....777777.4444444433333333311122333333445556667889999999999887.5.99987245677899******** PP

        LuxC 373 aGvsrivklGemnlaksGephDGvyaLkrlvr 404
                 +Gv+riv++G +  +     +DG   + +++r
  KIR65949.1 376 RGVDRIVPVGDALSFAA--TWDGYDLMREFTR 405
                 ****************9..******9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:00.58
# Mc/sec: 2130.56
//
Query:       KIR65950.1  [L=357]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-23   81.8  47.6    7.9e-23   81.4  47.6    1.1  1  LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region


Domain annotation for each model (and alignments):
>> LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4  47.6   4.4e-27   7.9e-23       3     300 ..      41     331 ..      37     332 .. 0.88

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 4.4e-27
  LPG_synthase_TM   3 lglalsalllalllrgvdlaalaaalrsldpwwlllalllallsvllralrWrlllrslgarislrrllrayliglfvnnvtPgalgGevvray 96 
                      + +a++a+ ++ ++ +  + ++++++  l +  ++l++l al  +++++++Wr+ +r l++r+s++++lr+ l+g  ++ ++Pg++   v+++ 
       KIR65950.1  41 VVVAIAAGMVWSVVDQ--WPQVRSTWLGLAWQSVVLSVLAALAGMVANTMAWRAAVRDLEHRVSVPAALRICLVG-QLGKYIPGSVWAYVLQVE 131
                      5567778888888555..*********************************************************.999******99******* PP

  LPG_synthase_TM  97 llkrkegvslskalasvvverlldllalvllgllallllggllaegaa.....vllllalallllavlalllllllrrrlarlarvlkrlarll 185
                      l +r  g+++++a+ +++v   l++ a + lgll+l++l    + g       v ++l+++ +l++v ++ +++++  +l+ la ++ r  +l 
       KIR65950.1 132 LSRR-AGLPRARAFLATLVSLGLGVTAALGLGLLSLPALRDAAGGGDStyadsVRVALWIVAVLFPVALVCAVPRVLTALVQLALRVLRRPPLE 224
                      ****.************************************99998889999877777788888888888999999999999999999998885 PP

  LPG_synthase_TM 186 arfarklasakrklvlasprrlllafllslliwllealtlylllralgvd...vslalll.lillaltlvgalpplPgGlGvrEaalalllall 275
                       r                +  +++++++s+l ++l++++l+ll+ a  ++     l + +    +a+t+++ ++++P+GlGvrEa+l+++la++
       KIR65950.1 225 HR--------------LTWPGVSRVVGWSALGYALFGVHLWLLANAQATPgmeGLLRS-VgSFAIAMTVGMFAFLSPSGLGVREAVLVAALAPF 303
                      43..............346669**********************66544422044444.3599999999999********************** PP

  LPG_synthase_TM 276 ...Gvsaaealaaallyrlitlylllll 300
                           + ++a+ +al+ rli +++ +l+
       KIR65950.1 304 legNGGVGAAMGIALASRLIFTIADVLA 331
                      *98447889999********99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.50
# Mc/sec: 2160.84
//
Query:       KIR65951.1  [L=366]
Description: aminotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.6e-121  403.8   0.0   8.5e-121  403.6   0.0    1.0  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    3.9e-06   26.3   0.3    1.4e-05   24.5   0.3    1.8  1  Beta_elim_lyase  Beta-eliminating lyase
    7.6e-06   25.1   0.0    5.6e-05   22.3   0.0    1.9  2  Aminotran_5      Aminotransferase class-V
    3.2e-05   22.6   0.0    4.6e-05   22.1   0.0    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  403.6   0.0  1.9e-124  8.5e-121       3     361 .]      10     361 ..       8     361 .. 0.98

  Alignments for each domain:
  == domain 1  score: 403.6 bits;  conditional E-value: 1.9e-124
                      HHHHHHHHHHHHTSS-SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTT CS
  DegT_DnrJ_EryC1   3 keeeleaveevlksgwltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdt 96 
                      +e++ + + ev++sg l +gp v+++E++fa+ +gv+ha+av++Gt+Al  aL++l++ pgdeV++ ++tFvat na+le+ga++ f+D+ +d+
       KIR65951.1  10 DEKAEQLAVEVIRSGVLAQGPMVARLEREFADLVGVEHAVAVNNGTTALVAALEVLDLRPGDEVVTSPFTFVATLNAILEAGATARFADIREDD 103
                      677888999************************************************************************************* PP

                      SSB-GGGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS-SSS-EEEEESTHHH CS
  DegT_DnrJ_EryC1  97 ynidpaaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnlttGeGGavvtndeel 190
                      +++dpaa++aai +rt+ ++pVhlyGq+adm a+  + ++hgl ++eD+A++lGat+ g+ +G++g +++fS+y+tKnlttGeGG+++t+d+ l
       KIR65951.1 104 FCLDPAALAAAIGPRTRVVMPVHLYGQPADMGAIVPLVERHGLGLVEDTAQSLGATVGGRGAGSFG-LGTFSLYATKNLTTGEGGMITTDDAVL 196
                      ******************************************************************.9************************** PP

                      HHHHHHHHBTTCECCTCSSCECCSS---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSSSEEESCEEEEEHC CS
  DegT_DnrJ_EryC1 191 aekarvlrnhGlkrkaekryvgevelGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttpketkkhawhlyavlvee 284
                      a+++rvlrn+G++    +ry+ ev  G+nyrlt++qAA+g+ qL+   ++varRr++a++++ +La+++g   +++ + ++ h+wh+y+vlv +
       KIR65951.1 197 ADRLRVLRNQGMR----QRYQYEV-AGHNYRLTDLQAALGIPQLAGYADTVARRRANAARLHAGLADVPGLRLPAELPGRT-HVWHQYTVLVTD 284
                      *************....8******.*********************************************98888888887.9*********** PP

                      CHHHCHHHHHHHHHHCCEE-B-SGSCHGGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHHHHHHHHHHHH CS
  DegT_DnrJ_EryC1 285 eaevkrdelvealkeegigtrvhypnplhrqpvyaerkeeasgdlpnaerlaervlsLplypelteedvdrVvealr 361
                       a v+rde++++l e+g+g+ ++yp++++ +  y+e  ++ ++  p++er+a+++lsLp++++l++ dvdrVvea+r
       KIR65951.1 285 AAPVSRDEVAARLGEQGVGCGIYYPKAVYDYDCYREHPQVVADPAPVTERVARQCLSLPVHHHLADGDVDRVVEAVR 361
                      *99***********************************************************************996 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.3   3.2e-09   1.4e-05      27     275 ..      25     261 ..      12     275 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 3.2e-09
                      CCT--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH-.-TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTT.TBE-HHHHHHHS CS
  Beta_elim_lyase  27 sYgedktvnrLedavaelfgkeaalfvpqGtaAnsillkill.qrgeevivtepahihfdetgaiaelagvklrdlknkea.Gkmdlekleaai 118
                      + ++ + v rLe ++a+l+g e+a+ v +Gt A   +l++l  ++g+ev+    + + f  t ++   ag+++r ++++e+   +d+++l+aai
       KIR65951.1  25 VLAQGPMVARLEREFADLVGVEHAVAVNNGTTALVAALEVLDlRPGDEVVT---SPFTFVATLNAILEAGATARFADIREDdFCLDPAALAAAI 115
                      5678899********************************998688888853...4455555555555566666666665543899********* PP

                      --S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--SS-EEEEE-H CS
  Beta_elim_lyase 119 kevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllanvGgvlafrd 212
                       ++ +       +++ v   +  Gq+     + ++  +++++g+ l+ D A  + a +      +  f +  ++++ ++K+l++  Gg++ ++d
       KIR65951.1 116 GPRTR-------VVMPVHL-Y--GQPAD---MGAIVPLVERHGLGLVEDTAQSLGATVG--GRGAGSF-GLGTFSLYATKNLTTGEGGMITTDD 193
                      99544.......4444444.4..88865...56788999************99999833..2233333.466899999**************** PP

                      H....HHHHHHHHHHHHT---S.STHHHHH..........HHHHHHHHSSTTHHHHHHHHHHHHHHHHHCT- CS
  Beta_elim_lyase 213 deledylaerveqrkylggglr.qagvlaa........leagiraleeglaslerdhktaeqlaeklelvrl 275
                      +     la r ++ +  g + r q++v +            gi  l   + +++r  ++a++l+++l++v++
       KIR65951.1 194 A----VLADRLRVLRNQGMRQRyQYEVAGHnyrltdlqAALGIPQLAGYADTVARRRANAARLHAGLADVPG 261
                      *....9999999977777766668888888777777554556666666688888888888888888888887 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.3e-08   5.6e-05      46     182 ..      33     158 ..      16     160 .. 0.86
   2 ?    0.5   0.0     0.052   2.3e+02     261     316 ..     226     276 ..     214     304 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.3e-08
                  HHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBET.TSCBEGGGHHHH--TTEEE CS
  Aminotran_5  46 eearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkviplde.egeldldelekllnektkl 142
                     + ++a+l+++e     + + ++t+a+ +++  l   l+pgde+v++     a+l+++ e+    ga+ +++ + e +  ld+ +l++++ ++t++
   KIR65951.1  33 ARLEREFADLVGVEH---AVAVNNGTTALVAALEVL--DLRPGDEVVTSPFTFVATLNAILEA----GATARFADIREdDFCLDPAALAAAIGPRTRV 121
                  556778899999996...667777777999999999..5******************777777....57777777765155799************** PP

                  EEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTT CS
  Aminotran_5 143 vaithvsnvtGtiqpveeigklakkkgalvlvDaaqavgh 182
                  v+  h     G   ++ +i+ l+ ++g  ++ D aq++g 
   KIR65951.1 122 VMPVHL---YGQPADMGAIVPLVERHGLGLVEDTAQSLGA 158
                  **9995...8**************************9975 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.052
                  HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEE CS
  Aminotran_5 261 lgaaleyleeigleaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnf 316
                  l+aal + +  g++   ++ ++ a++l+++l+++pg+rl  p    + ++ + + +
   KIR65951.1 226 LQAALGIPQLAGYADTVARRRANAARLHAGLADVPGLRL--P---AELPGRTHVWH 276
                  78889999999999999*********************9..6...45555555544 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0     1e-08   4.6e-05      51     142 ..      29     123 ..      25     159 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1e-08
                      -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTT.S-TTEEEEEESTSSHHHHHHHHHT.HHHTTCEEEEEST.TSHHHHHHHCCTTEEEE CS
  Cys_Met_Meta_PP  51 nptrsvleeriaaLeggeaalavssGmaAiaaailal.lkaGdeivvsddlYggtqrllkkv.lkklgievkfvdt.sdleelekaikentklv 141
                       p++  le++ a+L g+e+a+av+ G++A+ aa+  l l+ Gde+v+s   +  t + + +  ++    +++  d   d+++l++ai ++t++v
       KIR65951.1  29 GPMVARLEREFADLVGVEHAVAVNNGTTALVAALEVLdLRPGDEVVTSPFTFVATLNAILEAgATARFADIREDDFcLDPAALAAAIGPRTRVV 122
                      69999*************************88887775678**************8766554144455666666645899************99 PP

                      E CS
  Cys_Met_Meta_PP 142 y 142
                       
       KIR65951.1 123 M 123
                      5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2462.77
//
Query:       KIR65952.1  [L=585]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-07   30.7   0.0    2.8e-07   29.8   0.0    1.3  1  Glyphos_transf  CDP-Glycerol:Poly(glycerophosphate) glyceroph


Domain annotation for each model (and alignments):
>> Glyphos_transf  CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.6e-11   2.8e-07     194     293 ..     385     510 ..     373     514 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.6e-11
                     EEEEE----GGG--GSS----TT-HHHHH...HHHTTTEEEEE--SHHHHTT---.TT-TTTEEE-TT-S......................-HH CS
  Glyphos_transf 194 vilyaPTwRddevgesyrfelkldlerla...kalgedyvillklHpliqekiki.keksdyvvdvsdee......................dve 262
                      +lyaPTw ++     y   l l  er+     a      +++k+Hpl  ++ k+ k  +++vv +  ++                       + 
      KIR65952.1 385 TVLYAPTWEGWLDDDPYHTSLVLMGERIVrglLAARPSLRLIYKPHPLTGTRSKEaKAVHERVVELIGAAggdvdassldgprhrvvtgrvpALF 479
                     69*******999998888888888888883333567899**************9997778877766666668999999***************** PP

                     HHHHT-SEEEESS-THHHHHGGGT--EEEE- CS
  Glyphos_transf 263 dlllasDiLiTDYSSvmFDyavldrPiifya 293
                     d ++ +D+Li+D SSv+ D+   +rP +++ 
      KIR65952.1 480 DCFNQTDLLISDISSVVSDFVQSQRPYVVAN 510
                     **************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3941.74
//
Query:       KIR65953.1  [L=180]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-21   75.3  12.4    6.4e-07   28.9   1.5    3.9  4  Hexapep    Bacterial transferase hexapeptide (six repeats)
    7.3e-15   54.4  12.7    1.3e-06   28.0   2.4    4.0  4  Hexapep_2  Hexapeptide repeat of succinyl-transferase
  ------ inclusion threshold ------
       0.11   11.8   0.1       0.19   11.1   0.1    1.4  1  GatD_N     GatD N-terminal domain


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   2.9e-05      0.17       8      35 ..      11      38 ..       9      39 .. 0.89
   2 !   28.9   1.5   1.1e-10   6.4e-07       2      34 ..      23      55 ..      22      57 .. 0.94
   3 !   24.8   0.6     2e-09   1.2e-05       1      35 [.      58      92 ..      58      93 .. 0.94
   4 !   26.6   0.2   5.7e-10   3.4e-06       4      36 .]     111     143 ..     108     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.9e-05
                EEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep  8 vlIgpfaviggnVkIGdnvkIgagvvig 35
                ++++p a + +++ +Gd++k+++ + i+
  KIR65953.1 11 TFVHPSADVEEGARVGDGTKVWHLAHIR 38
                7899*****************9977775 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 1.1e-10
                EEEETTEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep  2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvi 34
                +++G+++++++ a+i++ + +G +++Ig++v++
  KIR65953.1 23 ARVGDGTKVWHLAHIRSSARVGAGCVIGRNVYV 55
                789****************************98 PP

  == domain 3  score: 24.8 bits;  conditional E-value: 2e-09
                TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep  1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35
                ++++G+ v+I +++ ++ +V+I d v +g+++v +
  KIR65953.1 58 GVTVGDLVKIQNNVSVYQGVTIEDEVFVGPCAVFT 92
                5789****************************987 PP

  == domain 4  score: 26.6 bits;  conditional E-value: 5.7e-10
                 EETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   4 IGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 +  ++ Ig++a++  +V+IG+++ ++ag+v+++
  KIR65953.1 111 VRRGASIGANATLVCGVEIGEYAMVAAGSVVTR 143
                 667999*************************85 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.043   2.6e+02       9      24 ..      12      29 ..      10      31 .. 0.76
   2 !   28.0   2.4   2.2e-10   1.3e-06       3      33 ..      42      74 ..      40      75 .. 0.94
   3 !    5.9   0.0    0.0018        11       2      14 ..      77      89 ..      76      92 .. 0.84
   4 !   23.2   1.0   7.2e-09   4.3e-05      10      34 .]     117     143 ..     113     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.043
                EE-TT-EE..SEEE-TT- CS
   Hexapep_2  9 liGanagi..GvslGdnc 24
                +++++a +  G  +Gd+ 
  KIR65953.1 12 FVHPSADVeeGARVGDGT 29
                788888766799999985 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 2.2e-10
                EE-TT-EE-TT-EE..SEEE-TT-EE-TT-EE- CS
   Hexapep_2  3 iIGdnCliGanagi..GvslGdncvvgaGvvit 33
                ++G+ C+iG n ++  Gv++Gd ++++++v ++
  KIR65953.1 42 RVGAGCVIGRNVYVdaGVTVGDLVKIQNNVSVY 74
                79***********999***************98 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0018
                EEE-TT-EE-TT- CS
   Hexapep_2  2 viIGdnCliGana 14
                v+I+d +++G+ a
  KIR65953.1 77 VTIEDEVFVGPCA 89
                89*******9865 PP

  == domain 4  score: 23.2 bits;  conditional E-value: 7.2e-09
                 E-TT-E.E.SEEE-TT-EE-TT-EE-S CS
   Hexapep_2  10 iGanag.i.GvslGdncvvgaGvvita 34 
                 iGana+ + Gv++G+ + v+aG+v+t+
  KIR65953.1 117 IGANATlVcGVEIGEYAMVAAGSVVTR 143
                 9*****846****************96 PP

>> GatD_N  GatD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   3.2e-05      0.19       2      23 ..      60      81 ..      59      87 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.2e-05
                -TT-EEEEE-SS-EEEEEE--- CS
      GatD_N  2 evGDlikvekkgreyeGilmPr 23
                 vGDl+k++++ ++y+G+ ++ 
  KIR65953.1 60 TVGDLVKIQNNVSVYQGVTIED 81
                69***************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1257.01
//
Query:       KIR65954.1  [L=112]
Description: dihydroorotate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-32  109.8   0.0    5.5e-32  109.6   0.0    1.1  1  DUF952    Protein of unknown function (DUF952)
  ------ inclusion threshold ------
       0.18   11.5   0.0       0.22   11.2   0.0    1.1  1  DUF569    Domain of unknown function (DUF569)


Domain annotation for each model (and alignments):
>> DUF952  Protein of unknown function (DUF952)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.0   6.2e-36   5.5e-32       3      89 ..       7      93 ..       5      94 .. 0.97

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 6.2e-36
                EHHHHHHHHHHSEE---HHHHHHTSEE-EEHHHHHHHHHHHSTT--SEEEEEEESGGGTTTEEEEEGGGGSEEEEESS-EEGGGEEE CS
      DUF952  3 plpeweaakaegeyagssldakdGFIHlStaeqvpetaarffagqedlvllkidasklaaavkweaseggelfPHlYgplplkaVvs 89
                + +ew+aa+a+g++ags +d++dGFIHlS a q+ eta+r+fag++ l ll++d+++l+aa++we+s+ggelfPHlY+ lp++aVv+
  KIR65954.1  7 TGTEWDAARAAGHFAGSAVDRQDGFIHLSAAGQLVETARRHFAGATGLTLLAVDPAALGAALRWEPSRGGELFPHLYAALPVAAVVE 93
                5689****************************************999**************************************97 PP

>> DUF569  Domain of unknown function (DUF569)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.5e-05      0.22      46     100 ..      24      76 ..       8      82 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.5e-05
      DUF569  46 vvekkaelirlkscyGkyltasnkplllGmtGkkvvqtkparldsstewepvreg 100
                  v ++  +i l s+ G+ +  + ++ + G+tG  ++   pa l   + wep r g
  KIR65954.1  24 AVDRQDGFIHL-SAAGQLV-ETARRHFAGATGLTLLAVDPAALGAALRWEPSRGG 76 
                 66777777877.5557654.45567789***********************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 909.73
//
Query:       KIR65955.1  [L=218]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-23   83.0   0.0    2.2e-23   82.5   0.0    1.2  1  Response_reg  Response regulator receiver domain
      3e-21   75.3   0.2    5.8e-21   74.4   0.2    1.5  1  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   0.0   2.5e-27   2.2e-23       1     112 []       3     110 ..       3     110 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 2.5e-27
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +l+v+Dd+ v+++l+++l+++gy ev+ a++ ++al   ++  +dl+llD+ +p+ dG +l++ +r+++ +l +i++ta++ee d+v +l++gadd+
    KIR65955.1   3 ILLVEDDRRVAAALSSALTRRGY-EVEHAATVAAAL---RAAPCDLVLLDLTLPDGDGTDLCRALRRRSAQLGIIAVTARGEERDRVLGLRLGADDY 95 
                   89*********************.777776666665...66789***************************************************** PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   ++Kpf++ eL +++e
    KIR65955.1  96 VVKPFSMVELQARIE 110
                   **********99985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.2   6.5e-25   5.8e-21       1      77 []     144     215 ..     144     215 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 6.5e-25
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  g+ev+lt+kef++L  L+++ g  vsr+++l  vwg ++  d +tv+vh+  LR kL+d    prl+etvrgvGYrl
   KIR65955.1 144 GREVTLTRKEFDILVSLARQLGVAVSRDRILLDVWGTTW-ADRHTVEVHVGSLRGKLGD----PRLVETVRGVGYRL 215
                  689************************************.*******************....8***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1607.14
//
Query:       KIR65956.1  [L=472]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.5e-16   58.3   0.0    1.9e-15   57.4   0.0    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
      6e-10   39.4   0.1    2.3e-09   37.5   0.1    2.1  1  HAMP         HAMP domain
    1.6e-09   37.7   3.5    1.6e-09   37.7   3.5    2.3  3  HisKA        His Kinase A (phospho-acceptor) domain
    0.00055   19.9   0.3     0.0014   18.6   0.1    1.8  2  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.077   12.8   0.0       0.14   12.0   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
      0.096   12.5   0.0       0.21   11.4   0.0    1.4  1  dCache_1     Cache domain
       0.29   11.1   6.6        5.6    6.9   0.5    2.5  2  SLATT_1      SMODS and SLOG-associating 2TM effector domain 1


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   7.2e-19   1.9e-15       3     102 ..     348     446 ..     346     456 .. 0.89

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 7.2e-19
                 HHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTE CS
   HATPase_c   3 ekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrG 101
                 ++ + q+++ l+dNavkf++++ge++v++ + +d + ++v+D+G+G++ ++l++  e+f + + + ++  g GlGl+iv  lv+  +G+++++  + rG
  KIR65956.1 348 PTAVDQALDALIDNAVKFSGTGGEVTVSVGRADDGVALEVRDTGPGMTLDQLDRATERFWR-APEVQNVDGAGLGLTIVAVLVDASDGRLTMRPGQPRG 445
                 567889************99*********97668***************************.999999****************999*99997666666 PP

                 E CS
   HATPase_c 102 t 102
                  
  KIR65956.1 446 L 446
                 5 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.1   8.9e-13   2.3e-09       2      49 ..     181     229 ..     180     233 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 8.9e-13
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCT.TSSSHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpv.sgrDEiGeLarafNaMld 49 
                 la+++lrP+ +L +++ +ia+Gd  +r+    g+ E+++La++fN+M+d
  KIR65956.1 181 LAGWVLRPVTELDAVTHEIAEGDRGARVQHrLGPPELRRLAASFNNMAD 229
                 799***************************99***************98 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         2   5.2e+03      14      27 ..      21      35 ..      20      46 .. 0.70
   2 ?   -0.9   0.0      0.66   1.7e+03      41      63 ..     217     239 ..     194     240 .. 0.80
   3 !   37.7   3.5   6.1e-13   1.6e-09       2      66 ..     238     301 ..     237     302 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2
                HHHHHHHHHHHHH.H CS
       HisKA 14 rtPLsailgnaea.L 27
                 tPL+a l++ e+ L
  KIR65956.1 21 ETPLAATLATRETdL 35
                599999998877644 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.66
                 HHHHHHHHHHHHHHHHHHHHHCC CS
       HisKA  41 letiesearrldhlvedlLdlsr 63 
                 l+++  + + + ++v+d++d  r
  KIR65956.1 217 LRRLAASFNNMADVVSDVMDRQR 239
                 78888888999999999988665 PP

  == domain 3  score: 37.7 bits;  conditional E-value: 6.1e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 ++ f+a+ +H+Lr+PL+a+++ +e L  +  ++++ ++  + + +e++rl  l++ lL+l+r e 
  KIR65956.1 238 QRAFVAHASHQLRNPLTALRLRVEELGPS-LTDPQGRAEHRLALEETDRLALLLDALLTLARAER 301
                 678***********************884.56678888************************985 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.5   6.5e+03      17      38 ..     255     282 ..     242     283 .. 0.52
   2 !   18.6   0.1   5.3e-07    0.0014      40     111 ..     359     431 ..     297     438 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.5
  HATPase_c_2  17 av.lrraglseelld.....eirlaveE 38 
                  a+ lr  +l ++l+d     e rla+eE
   KIR65956.1 255 ALrLRVEELGPSLTDpqgraEHRLALEE 282
                  4433334444444444444477777776 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 5.3e-07
  HATPase_c_2  40 ctNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep......keslkegGrGlalikglvDe 111
                  + Nav+        g+v+v++ ++++ + +ev+D Gpg ++ +l++ te          ++ +  G+Gl +++ lvD 
   KIR65956.1 359 IDNAVKFSGT---GGEVTVSVGRADDGVALEVRDTGPGMTLDQLDRATE--RfwrapeVQNVDGAGLGLTIVAVLVDA 431
                  5577777666...577*************************99887755..447999999****************96 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.3e-05      0.14       5      54 ..     353     403 ..     349     422 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.3e-05
  HATPase_c_3   5 kAlaelvdNsld..AdaenvkievnknrgktgeivieDdGkGmseeelknal 54 
                  +Al  l+dN++   +   +v+++v + + +   + ++D G Gm+ ++l++a 
   KIR65956.1 353 QALDALIDNAVKfsGTGGEVTVSVGRAD-DGVALEVRDTGPGMTLDQLDRAT 403
                  688889****986566777999999876.789****************9975 PP

>> dCache_1  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     8e-05      0.21      70     167 ..      69     156 ..      57     158 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8e-05
    dCache_1  70 snpdisgv..ylvdadGqviassdpssppnlegtddpadrdwykealaggg...gkpvisdpyvdqtggkpvitiavpiyddsgkfiGvlaadldldnl 163
                 s++ ++g+  ++vd+d + +++s+ +          +  ++ +++alag+         + ++  ++g+   +++avpi d  g+++G++++  ++  l
  KIR65956.1  69 SYDELYGIgaAVVDRDRRTVVASRSWRS-------GAGTESALDNALAGQQfsaP----GSVWPWADGP---VVVAVPIND-GGEVLGAVVITTPAGAL 152
                 4455554444999999999998888874.......34556668888998854331....2233212223...77899***9.5************9999 PP

    dCache_1 164 qdll 167
                 ++++
  KIR65956.1 153 RRTV 156
                 9876 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.9    0.0027       6.8      19      52 ..     151     184 ..     146     197 .. 0.85
   2 ?    6.9   0.5    0.0022       5.6      29      79 ..     285     333 ..     273     339 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0027
     SLATT_1  19 eneraakrwrlllillellalllaalrafgelsv 52 
                 + +r+ ++w lll++ +++a+l+ +l afg +++
  KIR65956.1 151 ALRRTVTAWWLLLAATGIVAVLACVLTAFGLAGW 184
                 679999***********************98877 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0022
     SLATT_1  29 lllillellalllaalrafgelsvdlvgvlaavaaallaWlelkqyeelaa 79 
                 +l +ll +l +l+ a r  +++ v  v+++a++a+ ++aW+ l ++++++ 
  KIR65956.1 285 RLALLLDALLTLARAER-EENQRV-TVDAAAVAASRVAAWQPLARHRSVTL 333
                 55556666555555555.455555.89999999999**********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3523.91
//
Query:       KIR65957.1  [L=271]
Description: hypothetical protein TK50_11840 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-36  123.5   0.0    1.1e-35  123.2   0.0    1.0  1  H2O2_YaaD  Peroxide stress protein YaaA


Domain annotation for each model (and alignments):
>> H2O2_YaaD  Peroxide stress protein YaaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.0   6.2e-40   1.1e-35       1     228 [.       1     250 [.       1     254 [. 0.87

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 6.2e-40
   H2O2_YaaD   1 MlillSpAktldedsleak...tee.tqpefleeaeellealkkl..........seeelkkllkisdklaelnveryqefeealkkkpAilaynGvvY 85 
                 Mlill+p++ ++ + +  +     + + p++++  +++l+al  l          +e+ + + l++   la  +++r++++e+a +++ A  +y+Gv+Y
  KIR65957.1   1 MLILLPPSEGKADAGTGRRldlA-RlSLPALTDARARVLAALVGLcagpagagapDEAAALEALGLTPGLA-GELRRNARLERA-ATAEAGRLYTGVLY 96 
                 9**********444444443323.259******************9*******777777788899******.778999998774.7899********** PP

   H2O2_YaaD  86 kaldaeslseedleyaqehlrIlSglYGlLrpldliqpYRLemgtklanekdLyefWgekltealne...eevlvnLaSkeyskavkp.kklkakvitv 180
                 +ald+++l +++++ a+++++I Sgl+G +r +d+i+pYR+ +g++l+  + L ++W+ +l  al++   +  +++L+S++y++ ++p  +l+++++tv
  KIR65957.1  97 EALDLATLPAAAQRAARRSVLISSGLWGAVRLTDRIPPYRCPIGARLPGVGALSAYWRRELGPALEAaagRGPVLDLRSGAYAATWTPrGELAERTVTV 195
                 **********************************************************************88****************888889***** PP

   H2O2_YaaD 181 vFkeek...ng.klkvvsvyaKkaRGlmvryiaenrie..sveeLkef.deegYr 228
                 ++++e+   +g  ++vvs+++K+++G++vr ++++ ++  +++ L +  +e++Y+
  KIR65957.1 196 RVLHERdtpSGpVRSVVSHFNKATKGRLVRDLLTAGARprTADGLVAAlREAKYT 250
                 ****985555567899****************99888765777776655666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2008.78
//
Query:       KIR65958.1  [L=1473]
Description: hypothetical protein TK50_11855 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-28   98.6   6.2    3.8e-28   98.6   6.2    3.9  3  Laminin_G_3      Concanavalin A-like lectin/glucanases superf
    2.2e-08   34.5  57.3     0.0044   17.6   0.7    7.8  8  VCBS             Repeat domain in Vibrio, Colwellia, Bradyrhi
    1.7e-07   31.2  26.7      0.013   15.6   0.0    6.6  6  FG-GAP           FG-GAP repeat
  ------ inclusion threshold ------
      0.012   14.9   8.2        1.2    8.5   0.1    4.4  6  TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal reg
       0.46   10.7   4.0       0.62   10.3   0.1    2.8  2  W_rich_C         Tryptophan-rich Synechocystis species C-term


Domain annotation for each model (and alignments):
>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   2.2       2.9     1e+04      57      89 ..     907     940 ..     877     980 .. 0.49
   2 !   98.6   6.2   1.1e-31   3.8e-28       2     151 ..    1060    1216 ..    1059    1217 .. 0.86
   3 ?   -2.4   0.0       1.3   4.6e+03      17      38 ..    1349    1370 ..    1342    1397 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.9
  Laminin_G_3  57 lrfsvnagngaeesvtsga.svpageWtHvavty 89 
                   +f +n ++ga   +t+ a +  +g+ t+ a t+
   KIR65958.1 907 AMFLWNRTTGALHLWTGLAfNQDTGQLTYTARTL 940
                  3333333333333333221122223333333332 PP

  == domain 2  score: 98.6 bits;  conditional E-value: 1.1e-31
  Laminin_G_3    2 ggsdyvtlpdaslp.tssfTvsaWvkpdslpsaaqiiissssdg.rgfelgl.dgsgrlrfsvnagngaee..svtsgasvpageWtHvavtydgg 92  
                   +g++ +t+++++++ t+sf++s+W kp+++++   +i s+++++ ++f l+  ++++++rf +++++++++  +v ++a  ++g+WtH+++t++++
   KIR65958.1 1060 SGDGALTVNSPLIDtTKSFSISVWAKPTAAGG---VIASEDGANaSRFLLWNnTSDNTWRFGMGNADSGWSytQVVTPAGTALGVWTHLVATFNAK 1152
                   57999*****99977****************9...5554555557788888734667******99999998556667777788***********65 PP

  Laminin_G_3   93 t..lrlYvNGvevgsatltggllsatsgplviGrdp...ggddpfdGlidevriynralsaaeI 151 
                   t  ++lYvNGv++gsa+ t++++++++g +v+Gr     + + +++G i ++++++ral+++++
   KIR65958.1 1153 TrtISLYVNGVLKGSAQFTATPTWPSGGKFVVGRYLyqgQPTAYYAGMISNLQVWKRALTPTQV 1216
                   445*******************************97753349********************98 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.3
  Laminin_G_3   17 ssfTvsaWvkpdslpsaaqiii 38  
                   ++ T  +Wv+p +l + + + +
   KIR65958.1 1349 AGSTNDLWVYPGDLAGGTSARV 1370
                   5667889****99988776655 PP

>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   3.7   0.00011       0.4       1      53 [.     709     767 ..     709     767 .. 0.64
   2 ?   -1.1   0.6      0.86   3.1e+03       5      26 ..     845     872 ..     844     907 .. 0.48
   3 !   17.0   1.6   1.9e-06    0.0068      20      59 ..     924     966 ..     897     968 .. 0.62
   4 ?   -3.4   0.2       4.5   1.6e+04      21      39 ..    1007    1025 ..     998    1034 .. 0.55
   5 ?   -1.8   0.2       1.4   4.9e+03      15      32 ..    1101    1118 ..    1092    1138 .. 0.63
   6 !   17.6   0.7   1.2e-06    0.0044       8      61 .]    1246    1298 ..    1241    1298 .. 0.74
   7 !    9.6   6.6   0.00037       1.3       1      60 [.    1337    1397 ..    1337    1398 .. 0.71
   8 !   12.6   1.9   4.3e-05      0.16       1      60 [.    1387    1443 ..    1387    1444 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
        VCBS   1 DldgDGrlDlvvan.dgg....lrvyrnngdGtft.dvtktslggsgggtgvavgDlDg 53 
                 Dl gDGr+Dl+ ++  ++    +++++nng    + +++++   g+g + +  ++D+Dg
  KIR65958.1 709 DLTGDGRADLLNVGsANNlaagIWLAENNGAAGVNpNISNIGARGNGVSGTNSPADFDG 767
                 99*********885234355559999999864444133333333344444578*****8 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.86
        VCBS   5 DGrlDlvvan.dgg....lrvyrnng.d 26 
                  G++Dl+ ++ d +    l+ y n g +
  KIR65958.1 845 SGYPDLIGTSgDATngyfLTYYPNFGiT 872
                 5999999996464422232223333332 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 1.9e-06
        VCBS  20 vyrnngdGtftdvtktslgg....sgggtgvavgDlDgDGdlDl 59 
                 +++n+ +G++t  + t l++    +g++ ++++gD++gDG +Dl
  KIR65958.1 924 LAFNQDTGQLTYTART-LAAsgwnTGASLSLRAGDVNGDGTADL 966
                 3445556666655444.44413335555569************8 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 4.5
        VCBS   21 yrnngdGtftdvtktslgg 39  
                  +  +gdG  t +t++++g+
  KIR65958.1 1007 FDDSGDGAVTTATDVTGGS 1025
                  4445666666665555444 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 1.4
        VCBS   15 dgglrvyrnngdGtftdv 32  
                   +++ ++ n+ d+t+++ 
  KIR65958.1 1101 ASRFLLWNNTSDNTWRFG 1118
                  345667777789998864 PP

  == domain 6  score: 17.6 bits;  conditional E-value: 1.2e-06
        VCBS    8 lDlvvan.dgglrvyrnngdGtftdvtktslggsgggtgva.vgDlDgDGdlDllv 61  
                   D+++a+  g+l+ yr +   + + +t+  +++++++++v  ++D+D+DG  D++v
  KIR65958.1 1246 TDIYAADtGGNLWRYRKQ---NAQVATPRLMSTGWNQFTVFgIADWDHDGNQDIVV 1298
                  688888834444444444...346677788999999998765************98 PP

  == domain 7  score: 9.6 bits;  conditional E-value: 0.00037
        VCBS    1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60  
                  D++ DG++D++ a+  + l+vy ++  G +t+++  +++g s ++t   ++D+ gD  +D++
  KIR65958.1 1337 DWNRDGFQDVITAGsTNDLWVYPGDLAG-GTSARVDIGDGwSTDYTPYGIADVVGDPTPDVY 1397
                  9************934767777766433.344444444445666667779999999999997 PP

  == domain 8  score: 12.6 bits;  conditional E-value: 4.3e-05
        VCBS    1 DldgDGrlDlvva..ndgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60  
                  D+ gD  +D++    ++g+lr+y   + G       t +g   gg+t+  + D+++DG++D++
  KIR65958.1 1387 DVVGDPTPDVYTRvvSNGTLRLYDFPAVG------ITQVGVgWGGYTSFGLTDFNRDGKPDVV 1443
                  66677778888544377777777776555......333333133456899***********98 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.8    0.0012       4.2       8      19 ..     708     719 ..     705     734 .. 0.84
   2 ?   -3.3   0.1       3.1   1.1e+04      14      21 ..     846     853 ..     846     860 .. 0.78
   3 !   12.7   1.0     3e-05      0.11       4      18 ..     952     966 ..     951     974 .. 0.92
   4 ?    2.7   0.1     0.039   1.4e+02       6      21 ..    1284    1299 ..    1281    1307 .. 0.82
   5 !    6.6   1.5    0.0023       8.4       6      30 ..    1334    1353 ..    1334    1366 .. 0.80
   6 !   15.6   0.0   3.7e-06     0.013       2      21 ..    1426    1445 ..    1425    1450 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0012
                 ESTSSSSS-EEE CS
      FG-GAP   8 gDvNGDGyaDLa 19 
                 gD+ GDG aDL+
  KIR65958.1 708 GDLTGDGRADLL 719
                 8**********8 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.1
                 SS-EEEEE CS
      FG-GAP  14 GyaDLavG 21 
                 Gy+DL+ +
  KIR65958.1 846 GYPDLIGT 853
                 9****966 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 3e-05
                 SEEEESTSSSSS-EE CS
      FG-GAP   4 slavgDvNGDGyaDL 18 
                 sl +gDvNGDG aDL
  KIR65958.1 952 SLRAGDVNGDGTADL 966
                 6779**********9 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.039
                  EEESTSSSSS-EEEEE CS
      FG-GAP    6 avgDvNGDGyaDLavG 21  
                  + +D ++DG +D++v 
  KIR65958.1 1284 GIADWDHDGNQDIVVR 1299
                  67888*********98 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.0023
                  EEESTSSSSS-EEEEEETT-ETCST CS
      FG-GAP    6 avgDvNGDGyaDLavGApeskggay 30  
                  +v+D N DG++D++++     g+++
  KIR65958.1 1334 GVADWNRDGFQDVITA-----GSTN 1353
                  58999**********9.....4444 PP

  == domain 6  score: 15.6 bits;  conditional E-value: 3.7e-06
                  TSSEEEESTSSSSS-EEEEE CS
      FG-GAP    2 GyslavgDvNGDGyaDLavG 21  
                   +s +++D+N DG++D++  
  KIR65958.1 1426 YTSFGLTDFNRDGKPDVVAR 1445
                  6899*************987 PP

>> TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0006       2.1       5      52 ..     681     726 ..     677     747 .. 0.83
   2 ?    8.5   0.1   0.00033       1.2      27      53 ..     949     975 ..     930     997 .. 0.76
   3 ?   -2.9   0.0         1   3.7e+03      25      47 ..    1277    1299 ..    1269    1308 .. 0.82
   4 ?   -3.1   0.0       1.2   4.4e+03      33      52 ..    1335    1354 ..    1332    1359 .. 0.85
   5 ?   -2.4   0.0      0.71   2.5e+03      32      53 ..    1384    1405 ..    1375    1414 .. 0.81
   6 ?   -0.3   0.0      0.16   5.8e+02      29      52 ..    1427    1450 ..    1401    1465 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0006
  TcdB_toxin_midN   5 eaaapvdfkkpetirvgtstsvedtnlslaDldGdGladlvltipsag 52 
                       +aa+ +f    t+  ++   ++ t  s +Dl GdG adl++ ++  +
       KIR65958.1 681 VTAAGQNFGETDTLTFNA--VPPATPASDGDLTGDGRADLLNVGSANN 726
                      578899999999999988..9999999***************999888 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00033
  TcdB_toxin_midN  27 edtnlslaDldGdGladlvltipsagt 53 
                      +   l+++D++GdG+adl + +  a+t
       KIR65958.1 949 ASLSLRAGDVNGDGTADLWTVGADAAT 975
                      456799***********7777776664 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1
  TcdB_toxin_midN   25 svedtnlslaDldGdGladlvlt 47  
                         ++t + +aD d dG  d+v++
       KIR65958.1 1277 WNQFTVFGIADWDHDGNQDIVVR 1299
                       46788899***********9986 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 1.2
  TcdB_toxin_midN   33 laDldGdGladlvltipsag 52  
                       +aD + dG+ d++++++  +
       KIR65958.1 1335 VADWNRDGFQDVITAGSTND 1354
                       7999*******999999876 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 0.71
  TcdB_toxin_midN   32 slaDldGdGladlvltipsagt 53  
                        +aD+ Gd ++d+ +++ s gt
       KIR65958.1 1384 GIADVVGDPTPDVYTRVVSNGT 1405
                       689*********9999877764 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.16
  TcdB_toxin_midN   29 tnlslaDldGdGladlvltipsag 52  
                       t + l D++ dG++d+v +  s+g
       KIR65958.1 1427 TSFGLTDFNRDGKPDVVARENSTG 1450
                       677899*********999887776 PP

>> W_rich_C  Tryptophan-rich Synechocystis species C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00017      0.62      34      66 ..     891     922 ..     872     942 .. 0.88
   2 ?   -0.5   0.7      0.38   1.4e+03      50      75 ..    1103    1130 ..    1091    1142 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00017
    W_rich_C  34 eyggwqalaaEtvnginqvlwkntstnelevWs 66 
                  + +w ++ aE  +g   +lw n +t++l++W+
  KIR65958.1 891 DWNNWRIATAEASDGTAMFLW-NRTTGALHLWT 922
                 5689*****************.78899*****6 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.38
    W_rich_C   50 nqvlwkntstne..levWstDsnwnwis 75  
                    +lw+nts n   +++ ++Ds w + +
  KIR65958.1 1103 RFLLWNNTSDNTwrFGMGNADSGWSYTQ 1130
                  4478999988642277889999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.24s 00:00:01.05 Elapsed: 00:00:00.41
# Mc/sec: 10812.79
//
Query:       KIR65959.1  [L=67]
Description: hypothetical protein TK50_11865 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       181  (0.0100954); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 499.71
//
Query:       KIR65960.1  [L=158]
Description: hypothetical protein TK50_11870 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.039   13.8   0.0       0.16   11.8   0.0    1.9  2  NifZ      NifZ domain


Domain annotation for each model (and alignments):
>> NifZ  NifZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.081   1.4e+03      51      66 ..      10      25 ..       3      28 .. 0.80
   2 ?   11.8   0.0   8.9e-06      0.16      20      59 ..     118     157 ..     106     158 .] 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.081
        NifZ 51 eiYlVeFleeglvVGc 66
                 i +V  l+ g vVG 
  KIR65960.1 10 SIMSVACLAVGAVVGA 25
                6888999999999996 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 8.9e-06
        NifZ  20 GtfpgkeigelLvkkGdvGvvvsvGtflqnqeiYlVeFle 59 
                 G++ + + gel+v++ d+G+v  +G   +  e Y+V+Fl+
  KIR65960.1 118 GSSVSPPSGELVVRRTDEGEVGLFGYESDPDEGYTVRFLK 157
                 8888999*******************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1242.06
//
Query:       KIR65961.1  [L=61]
Description: hypothetical protein TK50_11875 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 431.33
//
Query:       KIR65962.1  [L=85]
Description: hypothetical protein TK50_11880 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 641.15
//
Query:       KIR65963.1  [L=305]
Description: hypothetical protein TK50_11885 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.27   11.3  10.1      0.025   14.6   3.6    2.2  2  Sensor    Putative sensor


Domain annotation for each model (and alignments):
>> Sensor  Putative sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.5     0.042   7.5e+02     127     152 ..      15      40 ..       9      54 .. 0.67
   2 ?   14.6   3.6   1.4e-06     0.025       9      76 ..     136     204 ..     128     238 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.042
      Sensor 127 peallvavlGlllllvllwvvrglar 152
                 ++ +++av+ +++++v++ v+  +++
  KIR65963.1  15 LAKFGAAVACAVAIVVSWLVFDTMTG 40 
                 55566666666666666666666655 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.4e-06
      Sensor   9 gvaafvllvtglslglgllvllvGlplLalalllarglaaveRrrarlllglpvprph.rapep.pglla 76 
                 ++a+ +l ++ + l+++l +l vG+ l+ +++ + r +a  +Rr ar+   +p+p    ++p p pg+++
  KIR65963.1 136 ALAVTILGMARIGLTIVL-ILAVGVYLITALVGVPRYFAWANRREARRNRVVPLPVIVtNRPDPyPGPTR 204
                 444444444444444444.7889************************99999999777666666855544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2193.38
//
Query:       KIR65964.1  [L=605]
Description: hypothetical protein TK50_11890 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-45  155.2   0.1    1.1e-44  153.6   0.0    1.8  2  Asn_synthase  Asparagine synthase
    1.7e-34  118.9   0.0    2.9e-34  118.1   0.0    1.4  1  GATase_6      Glutamine amidotransferase domain
    7.8e-34  116.2   0.0    1.3e-33  115.5   0.0    1.3  1  GATase_7      Glutamine amidotransferase domain
    1.6e-07   31.0   0.0    3.7e-07   29.8   0.0    1.5  1  DUF3700       Aluminium induced protein


Domain annotation for each model (and alignments):
>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.52   2.3e+03      57     114 ..     123     184 ..     117     189 .. 0.77
   2 !  153.6   0.0   2.5e-48   1.1e-44       1     355 []     231     585 ..     231     585 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.52
  Asn_synthase  57 sdeakyakevaeh.lgtehtelvlteeelld...alpdviyhleepfadrsaiplyllsrla 114
                   +d++++a  +a++ +g++     +t++ +++   + + +i  + +p +dr+a+  yl++  +
    KIR65964.1 123 YDDREHALTLARDpFGIKPLYWTVTADGAIAfasECRPLIGLVPRPAVDRAALTHYLMFGSM 184
                   7888888888865488888888888888777543589999999999***********99877 PP

  == domain 2  score: 153.6 bits;  conditional E-value: 2.5e-48
  Asn_synthase   1 elrelLedaVkrrlradvpvGalLSGGlDSSliaalaarqsksplktFsigfeekgsdeakyakevaehlgtehtelvlteeelldalpdviyhlee 97 
                   elr+ + ++V  +l +dvpv++lLS GlDS+++a   ++  + +l +++++    ++ e + a+ +a+++g +h  +  +++e+   +++++ ++ +
    KIR65964.1 231 ELRAEFLRSVSLHLLSDVPVALLLSSGLDSGALAWACRELGQ-SLICVTVDQ-GTEMGEGSNAAVIARRFGHRHEIVTSSPDEA--DVRHYLAAMQR 323
                   68999*****************************99999886.9*******9.899*****************98888888774..69********* PP

  Asn_synthase  98 pfadrsaiplyllsrlakrkgvkvvLsGeGaDElfgGYpyfykaalsrsrefeklp....larslrasllarklrklaellelaeardleelaelyr 190
                   p +d   +  + + r++ + g+kv+LsG G+DE+ +GYp+f +         + ++    lar l+++ ++ ++rk a+l++ +  rd++   e+ r
    KIR65964.1 324 PSIDG--LNVFVVNRAIASLGLKVALSGTGGDEVLAGYPWFRQLRRLG--LLR-VTdrlgLARPLERA-VRLRHRKVAQLVGPTGPRDAAGFGEVAR 414
                   *6655..5778999999**********************888855333..222.22466455555544.8888999999999999999999999977 PP

  Asn_synthase 191 lkasdsae............aelegedelhrelyldlktllpgdllrk.DrasmahglEaRvPflDhrlvevalrlppelklrggieKyiLRealeg 274
                   ++  d +             +++ g++  +  l +d++++l g ll   D  sma ++E+RvPf+D  +++ al+++p+     g +K+ +   l +
    KIR65964.1 415 RLLLDPDVralapwyeprpgRASTGDRTCQALLRFDIEHYLGGMLLADtDTFSMASSVEVRVPFVDVPFARRALAVDPAR----GVGKRRFADWLGD 507
                   7777766688899999999999********************************************************86....4455555555555 PP

  Asn_synthase 275 ylPeeileRpKegfsapvgewklk.gelrelaeellsdsrlakeglldreaveelleeheagkrnesrqlwslllsleawle 355
                       + ++RpK gf  p++ w ++ g+l+ ++++  + + ++ ++ll+++av++ll  +++  + +++++w +  +l+ wl+
    KIR65964.1 508 EELIRSTRRPKWGFGLPMDRW-MReGPLAPWVRAAGAPD-APVRELLRPAAVDTLLAGWRE-GQLRWERAWIVV-ALDGWLR 585
                   4334467899***********.777**********9998.89999***********99999.666666677776.8999986 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.1   0.0   6.5e-38   2.9e-34       3     134 .]      32     157 ..      30     157 .. 0.95

  Alignments for each domain:
  == domain 1  score: 118.1 bits;  conditional E-value: 6.5e-38
    GATase_6   3 asglaslvedevalaHvRlaivglaeeegaqPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevllalleelGeevlerlrGmfafaiw 101
                 a++   + +++v l+ +Rlaiv+l+ ++g qPf+s+dg++++v+NGeiyn++elr++++  ++ a   r+D ++l  l+++lG++++++lrGmfa+a++
  KIR65964.1  32 AADR--WGGKRVTLGQTRLAIVDLS-DAGRQPFVSPDGQVSVVFNGEIYNHEELRRRFRL-HTTA---RCDGAILPELWTRLGTAMFRELRGMFAIAVY 123
                 5555..9999**************9.9999*****************************9.5555...9****************************** PP

    GATase_6 102 dkrentlilardrlgvkplyyavd.esglafase 134
                 d re+ l+lard +g+kply++v+ ++++afase
  KIR65964.1 124 DDREHALTLARDPFGIKPLYWTVTaDGAIAFASE 157
                 ************************99*******8 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.0     3e-37   1.3e-33       2     121 ..      46     161 ..      45     162 .. 0.94

  Alignments for each domain:
  == domain 1  score: 115.5 bits;  conditional E-value: 3e-37
    GATase_7   2 rrlsi.idseagaQPmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllalleaewgeealerlnGmfAfaiwdeeekrlllaRDrlGi 99 
                 +rl+i ++s+ag+QP+v s dg++ +vfnGeiyN++elr++++   ++ + ++D  +l +l+++  g++++++l+GmfA+a++d++e+ l+laRD++Gi
  KIR65964.1  46 TRLAIvDLSDAGRQPFV-SPDGQVSVVFNGEIYNHEELRRRFR---LHTTARCDGAILPELWTR-LGTAMFRELRGMFAIAVYDDREHALTLARDPFGI 139
                 799998899********.7**********************95...56799***********98.********************************** PP

    GATase_7 100 kPLyygedkgdallfaSelkal 121
                 kPLy++ ++++a++faSe + l
  KIR65964.1 140 KPLYWTVTADGAIAFASECRPL 161
                 *********88*******8765 PP

>> DUF3700  Aluminium induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   8.3e-11   3.7e-07      77     172 ..      68     157 ..      41     163 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 8.3e-11
     DUF3700  77 ifClfqGslenlasLkkqyGLsktan.evllvieayrtLrdrgPypadqvvkdleGkfafvlydskaktvfvaldadgsvplyWGiaadgsvvisdd 172
                 +  +f+G++ n  +L++++ L  ta  +  ++ e +  L          + ++l+G fa  +yd +++++ +a+d  g  plyW ++adg ++++ +
  KIR65964.1  68 VSVVFNGEIYNHEELRRRFRLHTTARcDGAILPELWTRL-------GTAMFRELRGMFAIAVYDDREHALTLARDPFGIKPLYWTVTADGAIAFASE 157
                 567888888888888888888655541556666666655.......45799*****************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4322.58
//
Query:       KIR65965.1  [L=700]
Description: glycogen branching protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-23   83.3   0.1    4.2e-19   68.7   0.0    3.1  3  CBM_48           Carbohydrate-binding module 48 (Isoamylase N
    3.8e-20   72.2   0.0    1.1e-19   70.6   0.0    1.9  1  Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
    2.3e-14   53.7   0.0    2.6e-09   37.1   0.0    2.2  2  Alpha-amylase    Alpha amylase, catalytic domain
     0.0028   17.8   0.0       0.15   12.3   0.0    2.6  2  AMPK1_CBM        Glycogen recognition site of AMP-activated p
  ------ inclusion threshold ------
      0.031   14.6   0.1       0.16   12.3   0.1    2.3  1  DUF3459          Domain of unknown function (DUF3459)
      0.052   11.7   0.0      0.082   11.1   0.0    1.2  1  Glyco_hydro_70   Glycosyl hydrolase family 70


Domain annotation for each model (and alignments):
>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00014      0.41       2      83 ..      16      81 ..      15      82 .. 0.72
   2 !   68.7   0.0   1.4e-22   4.2e-19       2      84 .]     107     186 ..     106     186 .. 0.93
   3 ?   -2.2   0.0       1.8   5.5e+03      11      38 ..     416     443 ..     410     460 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
                SEEEEESSCEEEEEEEE-TTSSEEEEEECGTTTEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEEEETTSCEEEE--TT CS
      CBM_48  2 lGahvsedekgvnfrvwapnAekVslvldfnnwdaeeiplkrrrtggvWelflpgdlphgslrYkyrvkgpsgekklllDPy 83
                lGah+ +  +++++r   + A++Vs v+      ++++p++r ++ gv+e++lpg+      +  yrv++ +    l+ DPy
  KIR65965.1 16 LGAHPAD--GRTTIRTLRRGARRVSAVVG-----GQRYPMTRVHDAGVFEVVLPGT------VLDYRVDVDG---ALRDDPY 81
                7778754..47888888888888876663.....6788****99**********54......5556666665...4555665 PP

  == domain 2  score: 68.7 bits;  conditional E-value: 1.4e-22
                 SEEEEESSCEEEEEEEE-TTSSEEEEEECGTT.TEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEEEETTSCEEEE--TT- CS
      CBM_48   2 lGahvsedekgvnfrvwapnAekVslvldfnn.wdaeeiplkrrrtggvWelflpgdlphgslrYkyrvkgpsgekklllDPya 84 
                 lGa+v +   gv f+vwapnA++V++v+df + ++    p+++  ++gvWe+ +p d+p g+ +Ykyrv g +g +++++DP a
  KIR65965.1 107 LGARVLDA--GVAFAVWAPNARGVRVVGDFTGwNPDDGWPMRSLGSSGVWEILVP-DVPAGA-KYKYRVLGADGRWRDKADPLA 186
                 9****988..**********************5556789****************.***995.*******************76 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.8
                 EEEEEEEE-TTSSEEEEEECGTTTEEEC CS
      CBM_48  11 kgvnfrvwapnAekVslvldfnnwdaee 38 
                 ++vn +v+  +A  V ++  +  w++ +
  KIR65965.1 416 QEVNATVYKHHAGVVMVAEESTAWPGVT 443
                 4789999999999888887777777665 PP

>> Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   3.8e-23   1.1e-19       1      95 [.     602     699 ..     602     700 .] 0.95

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 3.8e-23
                      EEEEEETTSSEEEEEECT.TT.EEEEEEE-SSSSEEECEEESSSSSEEEEETTCTTSGCCTTT-SSTSS-EEEECT..TCBSEEEEEEESTTEE CS
  Alpha-amylase_C   1 wvsakdeenkviaFeRgd.ge.kllvvfNfhpsnsrqdyrvgvpaagkyrdvlntdaeeyggsglgntgkvvtvdd..dgransltltlpprsa 90 
                      w+  +d  ++ ++F+R + ++  l++v Nf+   + +dyrvg+paag++++vlntda +yggsg+gn g+v++++   +g+++s+ l +pp+++
       KIR65965.1 602 WIAGDDVAHNTVSFVRIApDGaTLVCVANFSA-LPLEDYRVGLPAAGTWTEVLNTDAHHYGGSGVGNLGEVHAQGVpwHGLPASVALRVPPLGV 694
                      999*************8886668******999.888************************************999999**************** PP

                      EEEEE CS
  Alpha-amylase_C  91 lvlkv 95 
                      l+l++
       KIR65965.1 695 LWLRR 699
                      **986 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   8.7e-13   2.6e-09       8      79 ..     246     319 ..     243     335 .. 0.90
   2 !   14.3   0.0   7.5e-06     0.022     148     218 ..     355     439 ..     346     450 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 8.7e-13
                    CTCC.CCCCCT-SCEEE-B-CE-S-.TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--T CS
  Alpha-amylase   8 ekLd.YlkeLGvtaiwlsPifkspq.adhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsd 79 
                    e+L  Y++eLG+t +   P+++ p     gY ++ y++ + +fG+ +d+ +L++ +h+ g+ vilD V+ H  +
     KIR65965.1 246 EQLTaYVTELGFTHVEFLPVMEHPFgGSWGYQVTGYYAPTSRFGDPDDFRHLVDTLHNAGVGVILDWVPAHFPK 319
                    56656*****************9962689******************************************755 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 7.5e-06
                    TCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTTTCCCC.............HCCHCCHHHHHHHHHHHTC.CGTT-EEEEE-TT-S CS
  Alpha-amylase 148 neevrkelkdvvkfwlekg.idGfRlDvvkhvskveal.............esngeflheftqalnetva.srkevmtvgEvssda 218
                    + evr+ l   + +w +++ +dG+R+D+v  +   +               ++n e +  f+q++n+tv  ++  v++v+E s + 
     KIR65965.1 355 RREVRNFLVANALYWCDEFhVDGLRVDAVASMLYLDYSrpegqwapnvhggRENLEAI-AFMQEVNATVYkHHAGVVMVAEESTAW 439
                    5677777777888****************99988666689999999998866666555.799999999887888999999977665 PP

>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.058   1.7e+02      25      62 ..      44      81 ..      43      87 .. 0.87
   2 !   12.3   0.0   5.1e-05      0.15       6      59 ..     120     180 ..     117     190 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.058
   AMPK1_CBM 25 kkipLkksekdfsvilkLpeGthqykFiVDgewrvdpd 62
                +++p+++ ++  +  + Lp  +  y+  VDg +r dp 
  KIR65965.1 44 QRYPMTRVHDAGVFEVVLPGTVLDYRVDVDGALRDDPY 81
                57899999999999999***************998875 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 5.1e-05
   AMPK1_CBM   6 kWkggGkkVyvtGsfnnW..kkkipLk..ksekdfsvilkLpeGthqykFiV...Dgewrv 59 
                  W  +++ V v G f++W     +p++   s++++++++   +   +yk+ V   Dg+wr 
  KIR65965.1 120 VWAPNARGVRVVGDFTGWnpDDGWPMRslGSSGVWEILVPDVPAGAKYKYRVlgaDGRWRD 180
                 6999**************444679**98878889988875444555777776556888885 PP

>> DUF3459  Domain of unknown function (DUF3459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   5.3e-05      0.16      31      83 ..     611     668 ..     585     695 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.3e-05
                 TCEEEEEEEETTEEEEEEEE-SSCGCCS-....SS---SEEEEECT--S.....SSEE CS
     DUF3459  31 gallvrwrlgdgrllrllaNLgdepvtlp....pegaagkllfsseaaragg.dagrl 83 
                 +++  ++ + dg++l+++aN+++ p +      p++  ++ +++++a+++gg + g+l
  KIR65965.1 611 NTVSFVRIAPDGATLVCVANFSALPLEDYrvglPAAGTWTEVLNTDAHHYGGsGVGNL 668
                 44555555689************66666666687888888888899999998644444 PP

>> Glyco_hydro_70  Glycosyl hydrolase family 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.7e-05     0.082     633     665 ..     284     316 ..     275     327 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.7e-05
  Glyco_hydro_70 633 kpnkyGtaddlvdaikalhksGikviadwvpdq 665
                      ++++G  dd+++ + +lh+ G+ vi dwvp  
      KIR65965.1 284 PTSRFGDPDDFRHLVDTLHNAGVGVILDWVPAH 316
                     45789**************************74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5009.01
//
Query:       KIR65966.1  [L=678]
Description: alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-50  172.0   1.4    2.4e-50  171.3   1.4    1.4  1  DUF3416        Domain of unknown function (DUF3416)
    8.1e-05   22.3   0.0      0.003   17.2   0.0    2.3  2  Alpha-amylase  Alpha amylase, catalytic domain
    0.00027   21.1   0.0     0.0008   19.6   0.0    1.7  2  GHL6           Hypothetical glycosyl hydrolase 6


Domain annotation for each model (and alignments):
>> DUF3416  Domain of unknown function (DUF3416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.3   1.4   4.1e-54   2.4e-50       1     179 []       3     190 ..       3     190 .. 0.91

  Alignments for each domain:
  == domain 1  score: 171.3 bits;  conditional E-value: 4.1e-54
     DUF3416   1 griaIedvsPevdgGrfpaKavvGetvpVeAdvfrdGhdalaAtlvlrragekewqevpMt..pggndrweasftpdelGryeftveAWvDpfatWrhd 97 
                 gr++IedvsP+v++Gr+paKavvGe vpV+A  +r+Ghdal++++v+   + +++  ++M+  + g drw+a+++pd++G+++ftveA++Dp+ tW+++
  KIR65966.1   3 GRFPIEDVSPAVSCGRYPAKAVVGEAVPVSARAYREGHDALGCNVVWLGPDGRARPFTRMRpgEPGHDRWHATIRPDAVGEWTFTVEAFQDPYLTWQNA 101
                 699*********************************************8888*********99666********************************* PP

     DUF3416  98 lekkveagqdvele...leeGarlleraaeraea.....aalraaaaalrdd...peerlaaalseevaallaryplrelatrseklpveVdR 179
                 ++kk++agq +++    l+eG r+l++a+    +     a+++aa+aal+dd     +r+a al  ++a+ll ++p rel+t++++++++VdR
  KIR65966.1 102 VTKKIAAGQGAAELandLAEGVRVLTAALPV--VpagdvARVKAAVAALDDDgreLPARVAPAL--DLADLLWAHPVRELVTTGDEHRLWVDR 190
                 ********988776667**********9944..24699999********877633444555555..899***********************9 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     5e-07     0.003       7      89 ..     226     327 ..     220     361 .. 0.81
   2 !    3.2   0.0     0.009        54     144     215 ..     353     415 ..     344     423 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5e-07
                    HCTCCCCCCCT-SCEEE-B-CE.....................-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTS CS
  Alpha-amylase   7 iekLdYlkeLGvtaiwlsPifk.....................spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdeh 81 
                     ++L+ +  +G+++++l Pi                       sp    g       +i+p  Gt ed+   +++a e+g+ v lDl    ++ +h
     KIR65966.1 226 MDRLPGVAAMGFDVLYLPPIHPigrvnrkgrnnaltagpddvgSP-WAIGAAEGGHDAIHPDLGTPEDFRDFVAAAAEQGLEVALDLALQ-CAPDH 319
                    688999999**********999999***********999999888.78888888999******************************985.99999 PP

                    CCCHCCHH CS
  Alpha-amylase  82 ewfkeslk 89 
                     w +e+ +
     KIR65966.1 320 PWVTEHPE 327
                    99555433 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.009
                    B-TTTCC..CCCCCCCCCCCCCTTT-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHTCCGTT-EEEEE-T CS
  Alpha-amylase 144 Lntenee..vrkelkdvvkfwlekgidGfRlDvvkhvskvealesngeflheftqalnetvasrkevmtvgEvs 215
                    Ln +n+   +r e+ +vv +w+ +gi  fR+D  +  +         +f+h   ++++++     +v  ++E +
     KIR65966.1 353 LNFDNDPegIRAEILRVVLHWVGEGIRIFRVDNPHTKPF--------DFWHWLIAEVKKVD---PDVLFLAEAF 415
                    555554334999********************9888777........99998888888665...7777777765 PP

>> GHL6  Hypothetical glycosyl hydrolase 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.3e-07    0.0008      40     102 ..     284     348 ..     273     361 .. 0.82
   2 ?   -3.3   0.0       1.5     9e+03      72      92 ..     519     540 ..     517     551 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.3e-07
        GHL6  40 hpklk..rdllkelvkachregikvvvrvdfska.deriyeqhpeWaavkenGeviiiegervgep 102
                 hp l   +d+ ++ v a+ ++g+ v   +  ++a d+  + +hpeW+  +++G++ + e+ + +++
  KIR65966.1 284 HPDLGtpEDF-RDFVAAAAEQGLEVALDLALQCApDHPWVTEHPEWFTTRADGSIAYAENPPKKYQ 348
                 5555323566.99*******************9868889***************987777666664 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.5
        GHL6  72 deriyeqhp.eWaavkenGevi 92 
                 d++ ye +p +Wa  +++G+  
  KIR65966.1 519 DNEKYELRPrDWAGAQAQGRSL 540
                 67788888879**999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 5056.55
//
Query:       KIR65967.1  [L=375]
Description: hypothetical protein TK50_11905 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-12   47.9   0.0    1.7e-08   35.1   0.0    3.3  1  Sulfotransfer_3  Sulfotransferase family
  ------ inclusion threshold ------
      0.024   14.5   0.0      0.062   13.1   0.0    1.8  1  Sulfotransfer_4  Sulfotransferase domain
      0.038   14.5   3.2       0.73   10.4   0.1    3.3  4  TPR_19           Tetratricopeptide repeat
      0.075   12.6   0.1        3.1    7.3   0.0    2.4  2  Sulphotransf     Stf0 sulphotransferase


Domain annotation for each model (and alignments):
>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   3.8e-12   1.7e-08       3     217 .]     103     306 ..     102     306 .. 0.70

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 3.8e-12
                      EEE--TTSSHHHHHHHHHTSTTEE--S--.--TT.-SBHHHHHHHHTT-S...TTTHHHHHHHHHHT--HHHHHHHHHHHHHTT-BHHHHHHHH CS
  Sulfotransfer_3   3 fivGlpRSGTTlLhrlLaahpdvripeetlfvaprllalleawskdgrelrrlldagltqeeaelphledaeepeedlqllraalasvileala 96 
                       + ++ R G+TlL+r L++   vr+  e  +v+ +++ l++  ++ g    r  da++++              ++++++l            a
       KIR65967.1 103 LVYSVGRCGSTLLSRALGEVAGVRSYSEP-DVFTEIALLRH--EDPG----R--DAEYARL------------IRSCVRVL------------A 163
                      56778899999999999999999998888.66665655555..1111....1..2211111............22333333............3 PP

                      HHHTT.TSEEEEEESSGGG-HHHH.HHHBSSEEEEEEE--H.HHHHHHHHHTT--------.......................--..-HHHHH CS
  Sulfotransfer_3  97 rvpsy.arwlvdKsPshlfrldll.lelfPdAkfihlvRdpvdtvlssyvslfgkkresys.......................edsldeleda 165
                      +++s+ +++l  K  +   +l+ l +e+fPdA+ ++l+Rd  +  l+s+ + f+ + ++ +                       e + +++e  
       KIR65967.1 164 NTGSGsTETLAVKFRASGIQLGDLfHEVFPDARGVFLHRDA-RPWLESMHQGFTPHLPDPGaqlaflkyvlaqaplimpfvarhERQPTTTEAY 256
                      333330345555666666666555168*************7.7788888777766665555667777888888888888888654445577799 PP

                      HHHHHHHHHHHHHHHHH.S-TTSEEEEEHHHHHH-HHHHHHHHHHHHT----G CS
  Sulfotransfer_3 166 leewarayerllaarar.lppdrfldvrYedLvadpegtlrriyeflglpwdd 217
                      + +w   ++r++a r+  +    +l v Ye+L adp++tl ++++++glp dd
       KIR65967.1 257 VLTWLSVLDRYRALRRAgV---PLLPVAYEALDADPKATLAAVLAHCGLPADD 306
                      9***********9998734...49**************************886 PP

>> Sulfotransfer_4  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.4e-05     0.062      79     117 ..     183     221 ..     101     276 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.4e-05
  Sulfotransfer_4  79 lfaeelleayPdakvIlteRdpekWlksmkktllalrse 117
                       + + ++e++Pda+ +  +Rd + Wl+sm++ + +   +
       KIR65967.1 183 QLGDLFHEVFPDARGVFLHRDARPWLESMHQGFTPHLPD 221
                      3445567788********************988877655 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.4   6.2e+03      53      65 ..     142     155 ..     137     158 .. 0.69
   2 ?   -2.3   0.0       1.4   6.5e+03      10      27 ..     204     227 ..     201     237 .. 0.42
   3 ?    2.9   0.2     0.035   1.6e+02      16      49 ..     283     315 ..     271     320 .. 0.85
   4 ?   10.4   0.1   0.00016      0.73      34      64 ..     335     365 ..     334     367 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.4
      TPR_19  53 eedpd.daryasLl 65 
                  edp  da+ya+L+
  KIR65967.1 142 HEDPGrDAEYARLI 155
                 56666569999997 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.4
      TPR_19  10 Alalleqalqe......dpknaea 27 
                 A + le++ q       dp+ + a
  KIR65967.1 204 ARPWLESMHQGftphlpDPGAQLA 227
                 555666665554333222222222 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.035
      TPR_19  16 qalqedpknaearllLAeallalgqldeAealLd 49 
                 +al++dpk   a+  LA + l + ++d+A a+ +
  KIR65967.1 283 EALDADPKATLAAV-LAHCGLPADDVDAAYATFS 315
                 68999999888888.9***999999999988765 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00016
      TPR_19  34 allalgqldeAealLdalpeedpddaryasL 64 
                 a la+ ++++A+a+L++ p   pdd+ +++L
  KIR65967.1 335 AALAAEDYAQARAVLAEHPVVGPDDPLVRGL 365
                 67999**********************9988 PP

>> Sulphotransf  Stf0 sulphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.019        83       3      22 ..     103     122 ..     102     225 .. 0.80
   2 ?    7.3   0.0   0.00069       3.1     186     220 ..     274     308 ..     267     322 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.019
  Sulphotransf   3 lvcasqRsGstLLvelLrat 22 
                   lv +  R GstLL + L + 
    KIR65967.1 103 LVYSVGRCGSTLLSRALGEV 122
                   567788********999653 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00069
  Sulphotransf 186 giepldisyealvaapvavvaavlealgldpelak 220
                   g+  l ++yeal a+p+a++aavl++ gl ++ + 
    KIR65967.1 274 GVPLLPVAYEALDADPKATLAAVLAHCGLPADDVD 308
                   666789********************999776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2343.37
//
Query:       KIR65968.1  [L=75]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-20   70.7   0.0    6.5e-20   70.5   0.0    1.0  1  GntR           Bacterial regulatory proteins, gntR family
    0.00033   20.3   0.0    0.00042   19.9   0.0    1.2  1  HTH_41         Helix-turn-helix domain
  ------ inclusion threshold ------
      0.027   15.0   0.0      0.028   14.9   0.0    1.1  1  HTH_27         Winged helix DNA-binding domain
      0.037   14.4   0.0      0.047   14.0   0.0    1.2  1  Rrf2           Transcriptional regulator
       0.12   12.2   0.0       0.17   11.7   0.0    1.2  1  LexA_DNA_bind  LexA DNA binding domain


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   1.8e-23   6.5e-20       2      64 .]       7      69 ..       6      69 .. 0.99

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 1.8e-23
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                yeqv + +++ I+ g+l+pGdkLPs  eL++++  s+t++R ALr L ++g++e++qg+G fV
  KIR65968.1  7 YEQVIDDVTASIRGGTLKPGDKLPSITELCEQYRASATPIRLALRILDERGWIEVHQGKGSFV 69
                9************************************************************99 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.2e-07   0.00042       1      39 [.      24      62 ..      24      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.2e-07
      HTH_41  1 kvGdRlktIeelakeleLSvGlvQkALklLeddkaisle 39
                k Gd+l++I+el++++  S   +  AL  L + + i++ 
  KIR65968.1 24 KPGDKLPSITELCEQYRASATPIRLALRILDERGWIEVH 62
                56**********************************986 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   7.9e-06     0.028      20      51 ..      31      63 ..      14      73 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.9e-06
      HTH_27 20 kladlcgrlnvedshisyslkkLtekGLv.ert 51
                ++++lc+ +  ++++i  +l+ L e+G++ +++
  KIR65968.1 31 SITELCEQYRASATPIRLALRILDERGWIeVHQ 63
                56***************************3333 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.3e-05     0.047      20      66 ..      24      69 ..      21      75 .] 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-05
                SSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEE CS
        Rrf2 20 eeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyr 66
                +++++  s++e+ e++  s++ ++  l+ L + g++++ +Gk G ++
  KIR65968.1 24 KPGDKLPSITELCEQYRASATPIRLALRILDERGWIEVHQGK-GSFV 69
                57778889*********************************9.5554 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.8e-05      0.17      26      62 ..      30      65 ..      22      66 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.8e-05
                   --HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GGG- CS
  LexA_DNA_bind 26 PsireiaralglkSpsaveehLkaLerKGyierdpgk 62
                   Psi e+ ++ + +S+ ++   L+ L  +G ie+ +gk
     KIR65968.1 30 PSITELCEQYR-ASATPIRLALRILDERGWIEVHQGK 65
                   99999999999.57*******************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 590.35
//
Query:       KIR65969.1  [L=65]
Description: hypothetical protein TK50_11915 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 470.80
//
Query:       KIR65970.1  [L=399]
Description: hypothetical protein TK50_11920 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-10   39.9   3.5    3.9e-10   39.9   3.5    4.2  4  HTH_31    Helix-turn-helix domain
    1.4e-06   28.3   0.2    4.2e-06   26.7   0.0    1.9  2  HTH_3     Helix-turn-helix
    6.6e-06   26.1   0.0    1.1e-05   25.4   0.0    1.3  1  HTH_19    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.026   14.5   0.1      0.057   13.4   0.1    1.5  1  HTH_37    Helix-turn-helix domain
      0.038   14.0   0.0       0.11   12.5   0.0    1.8  1  KorB      KorB domain
       0.17   11.7   3.8       0.22   11.4   0.2    3.0  3  HTH_23    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   3.5   1.3e-13   3.9e-10       2      60 ..       6      64 ..       5      68 .. 0.92
   2 ?   -2.4   0.4       2.1   6.4e+03       5      61 ..     134     142 ..     109     157 .. 0.56
   3 ?   -0.8   0.3      0.69   2.1e+03      50      61 ..     201     212 ..     167     218 .. 0.81
   4 ?    0.7   0.5      0.23     7e+02      42      57 ..     384     399 .]     360     399 .] 0.85

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.3e-13
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpae 60
                 G++++++R r++++q++ A+rlg s+s++ ++E+G r + + + l+ +a+al+ d + 
  KIR65970.1  6 VGRRVAHWRVRRNMTQQQFADRLGKSKSWVDKVERGVRRLERVSSLREVAEALRIDLEM 64
                59************************************6669************99765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.1
      HTH_31   5 lLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaer 61 
                 l                                                l++ ++ r
  KIR65970.1 134 L------------------------------------------------LDAAREAR 142
                 2................................................44443333 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.69
      HTH_31  50 laralgldpaer 61 
                 l++al++++ +r
  KIR65970.1 201 LCQALRASGRLR 212
                 788888887666 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.23
      HTH_31  42 pspavlealaralgld 57 
                   pa+l++la  lg++
  KIR65970.1 384 AAPAALTRLAATLGVT 399
                 46899*****999985 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.4e-09   4.2e-06       4      53 ..      13      63 ..      10      65 .. 0.92
   2 ?   -1.8   0.0       1.1   3.4e+03      40      51 ..     388     399 .]     381     399 .] 0.71

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.4e-09
                HHHHTTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  4 lRkqlglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvsld 53
                +R  ++++q+++A++lG s+s + + E+G +r  +++ l ++a+aL ++l+
  KIR65970.1 13 WRVRRNMTQQQFADRLGKSKSWVDKVERGvRRLERVSSLREVAEALRIDLE 63
                6999*************************988889999*******999987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
                 HHHHHHHHHTSE CS
       HTH_3  40 tlkklakaLgvs 51 
                  l +la +Lgv+
  KIR65970.1 388 ALTRLAATLGVT 399
                 567788888875 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.6e-09   1.1e-05       1      61 [.       7      67 ..       7      70 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 3.6e-09
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aelllkiaealgidleyllq 61
                G+r+   R  +++tq++ a+rlg s+s   + E g +  ++  + l+ +aeal idle+ll 
  KIR65970.1  7 GRRVAHWRVRRNMTQQQFADRLGKSKSWVDKVERGVR-RLErVSSLREVAEALRIDLEMLLA 67
                89*********************************88.777799****************97 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.9e-05     0.057      24      77 ..      11      64 ..       6      66 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
                HHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTTEEEEE CS
      HTH_37 24 aeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalGqkvei 77
                a  + +r+ +q++ a +lg +++ v++++rg  +  ++++L+++++al  ++e+
  KIR65970.1 11 AHWRVRRNMTQQQFADRLGKSKSWVDKVERGVRRLERVSSLREVAEALRIDLEM 64
                55666899**********************9999999***********999886 PP

>> KorB  KorB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.7e-05      0.11       3      20 ..      18      35 ..      16      43 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.7e-05
        KorB  3 gvkqadIAkaLGksksfv 20
                +++q++ A++LGksks+v
  KIR65970.1 18 NMTQQQFADRLGKSKSWV 35
                899**************9 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   7.3e-05      0.22      14      47 ..      15      49 ..       9      52 .. 0.76
   2 ?   -0.1   0.1       0.3   9.1e+02      15      29 ..      46      60 ..      42      62 .. 0.77
   3 ?   -1.8   0.2      0.99   2.9e+03       9      27 ..     247     264 ..     245     267 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.3e-05
      HTH_23 14 laeGlsvreIAreLgvsrrTvyrwlkryre.eGle 47
                +++ +++++ A++Lg s+++v+++ +  r+ e ++
  KIR65970.1 15 VRRNMTQQQFADRLGKSKSWVDKVERGVRRlERVS 49
                34489******************977655545555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.3
      HTH_23 15 aeGlsvreIAreLgv 29
                 +  s re+A++L +
  KIR65970.1 46 ERVSSLREVAEALRI 60
                446799******987 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.99
      HTH_23   9 rillllaeGlsvreIAreL 27 
                 +++l++a G   +++A+eL
  KIR65970.1 247 QAALAAA-GRGDERAADEL 264
                 5666666.99999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3317.01
//
Query:       KIR65971.1  [L=404]
Description: glycosyl transferase family 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-32  112.4   4.2    3.3e-32  111.8   1.8    2.3  2  Glyco_transf_4   Glycosyltransferase Family 4
    1.1e-28  100.0   0.0    1.5e-27   96.2   0.0    2.2  1  Glycos_transf_1  Glycosyl transferases group 1
    7.7e-25   87.9   3.6    1.6e-24   86.8   0.6    2.6  3  Glyco_trans_1_4  Glycosyl transferases group 1
    6.2e-22   78.7   9.5    6.2e-22   78.7   9.5    3.3  3  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    1.9e-09   37.8   0.8    2.4e-08   34.3   0.2    2.6  2  Glyco_trans_1_2  Glycosyl transferases group 1
    1.9e-05   24.5   0.7      0.002   17.9   0.3    2.4  2  Glyco_transf_5   Starch synthase catalytic domain
     0.0026   17.8   0.0     0.0051   16.8   0.0    1.6  1  Glyco_trans_4_2  Glycosyl transferase 4-like
  ------ inclusion threshold ------
      0.073   12.8   2.1        3.2    7.4   1.5    2.2  2  DUF3492          Domain of unknown function (DUF3492)


Domain annotation for each model (and alignments):
>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   1.8   1.5e-35   3.3e-32       1     169 [.      25     188 ..      25     189 .. 0.84
   2 ?   -0.4   0.0      0.46     1e+03     147     165 ..     197     215 ..     192     219 .. 0.85

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 1.5e-35
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrl 95 
                     +GG+++hv++Lar+L+r+  +V+v ++g ++ ++          + p  l + +    ++  +l  ++   + DvvH+h+++a +a++ a ++ +
      KIR65971.1  25 YGGAGVHVEYLARELRRL-ADVRVHCFGAPRSEPGV-----TAYAEPAGLAGANAALRTMGVDLEMAAACAGTDVVHSHTWYANLAGHTAKLL-H 112
                     7****************9.9******9999999888.....3334444444444444455555555555559************999998888.* PP

  Glyco_transf_4  96 giplVltvHglyekrllkarl.kplsrllralerrllrradrviavSeatadelreryg.vppekitVipnGvDle 169
                     g+p+V+t+H+l++ r++ka + + +++l  ++er ++ +ad++iavS  +++++++ y+ v+p+++ V++nG+D++
      KIR65971.1 113 GVPHVVTAHSLEPLRPWKAEQlGGGYALSSWCERTAYEAADAIIAVSAGMRADVLAAYPaVDPDRVKVVYNGIDTA 188
                     *************8888876626778899999******************************************97 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.46
  Glyco_transf_4 147 elrerygvppekitVipnG 165
                     ++++r+g++p++  V++ G
      KIR65971.1 197 DVVDRLGIDPARPSVVYVG 215
                     67889***********966 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.0   6.9e-31   1.5e-27       9     146 ..     202     341 ..     197     381 .. 0.77

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 6.9e-31
                      TTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES....STTHHHHHHHHHHHCTT.CGGGEEECCH.SSSHHHHHHCESEEE CS
  Glycos_transf_1   9 lgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG...ngeeekelkklaeelels.dnviflgevs.redleellknadifv 97 
                      lg++  ++ +++vgr++k+Kg+ +l++a+++l+   ++   +++aG     e  +e++ l+ el  +   v ++ e+  +++++++l++a +fv
       KIR65971.1 202 LGIDPARPSVVYVGRITKQKGLPYLLRAARELP---EDTQLVLLAGapdTAEIAAEVEGLVTELRAKrSGVVWVAEMLpKHEVIQVLTHATVFV 292
                      567788999***********************8...578888899*998556666777777776654145677777666*************** PP

                      EEESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HH CS
  Glycos_transf_1  98 lpsisEgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnae 146
                      +ps +E++Giv lEAma+ ++v+a+++gg++evv+dgetGllv+ ++a+
       KIR65971.1 293 CPSVYEPMGIVNLEAMACETAVVATATGGIPEVVADGETGLLVPIEQAA 341
                      **************************************77777766543 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.35   7.7e+02      17      75 ..      32      93 ..      28     124 .. 0.64
   2 ?   -2.0   0.0         2   4.5e+03      68      90 ..     147     169 ..     142     171 .. 0.84
   3 !   86.8   0.6   7.2e-28   1.6e-24       1     134 []     208     367 ..     208     367 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.35
                     HHHHHHHHHHHH.HHEEEEEES---...HHHHHHHT.....T-T.TEEEE---.THHHHHHHH-SE CS
  Glyco_trans_1_4 17 vdllleavpllrkkdvrlvivGdgp.rpeeleelaa.....gleerveftGfv.edlaellaaadv 75
                     v++l++++ +l+  dvr++  G  p  ++ + ++a+     g ++  + +G v  ++a++ a  dv
       KIR65971.1 32 VEYLARELRRLA--DVRVHCFG-APrSEPGVTAYAEpaglaGANAALRTMG-VdLEMAAACAGTDV 93
                     678888888888..78999999.5543346665555552333334455555.42346666665555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2
                      HHHHH-SEEEE-----SHHHHHH CS
  Glyco_trans_1_4  68 ellaaadvfvaPsegfglkllEa 90 
                       +++aad  +a s g++  +l a
       KIR65971.1 147 TAYEAADAIIAVSAGMRADVLAA 169
                      67999999999999998888766 PP

  == domain 3  score: 86.8 bits;  conditional E-value: 7.2e-28
                      SEEEEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---..HHHHHHHTT-.......T.TEEEE---...THHHHHHHH-SEEEE--..-- CS
  Glyco_trans_1_4   1 rpvilfvGrleenvkgvdllleavpllrkkdvrlvivGdgprpeeleelaagl.......eerveftGfv...edlaellaaadvfvaPs..eg 82 
                      rp +++vGr+  ++kg+ +ll+a+ +l  +d +lv+  + p+ +e+ ++++gl       +++v+++ ++   +++ ++l +a+vfv+Ps  e 
       KIR65971.1 208 RPSVVYVGRI-TKQKGLPYLLRAARELP-EDTQLVLLAGAPDTAEIAAEVEGLvtelrakRSGVVWVAEMlpkHEVIQVLTHATVFVCPSvyEP 299
                      6899******.567**************.4567666554664446666665443333433477999999998777******************* PP

                      -SHHHHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT..........-HH....HHHHHHHHHHH- CS
  Glyco_trans_1_4  83 fglkllEamaaglpvVatdvggiaevv..gengllvppg..........dpe....alaeailrLled 134
                      +g++ lEama++++vVat++ggi+evv  ge+gllvp +          dp+    +la+ai r+l+d
       KIR65971.1 300 MGIVNLEAMACETAVVATATGGIPEVVadGETGLLVPIEqaadgsgtplDPQrfvaDLAAAINRVLAD 367
                      ************************************98845555555553334444667777777765 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   9.5   2.8e-25   6.2e-22       1     160 []      26     184 ..      26     184 .. 0.79
   2 ?    1.5   0.1      0.16   3.5e+02      96     137 ..     236     295 ..     195     299 .. 0.44
   3 ?    2.6   0.4     0.076   1.7e+02      14      68 ..     305     363 ..     301     398 .. 0.60

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 2.8e-25
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgapeleedgvrvhrlpvprrpspladlaal....ralrrllrqrrerpdvvhahsptaglaarl 90 
                      gG+g++v+ lar+L+++ ++V+v + ++++++p     gv+ +  p++ ++   + + ++      +++++     + dvvh+h+++a+la+  
       KIR65971.1  26 GGAGVHVEYLARELRRL-ADVRVHCFGAPRSEP-----GVTAYAEPAGLAG--ANAALRTmgvdLEMAAAC----AGTDVVHSHTWYANLAGHT 107
                      8****************.********8877777.....8887665544333..222222212113445555....9****************** PP

  Glyco_trans_4_4  91 arrrrgiplvvtlhglllrrg.....sgavrrlyralerrllrradavlvvseaeaeelralg..vpadrvvvvpng 160
                      a++ +g+p+vvt+h+l++ r+      g  ++l  ++er+++  ada+++vs+++++++ a +  v++drv vv ng
       KIR65971.1 108 AKLLHGVPHVVTAHSLEPLRPwkaeqLGGGYALSSWCERTAYEAADAIIAVSAGMRADVLAAYpaVDPDRVKVVYNG 184
                      **************86644333344477778888**********************999995549***********8 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.16
  Glyco_trans_4_4  96 giplvvtlh............g..lllrrgsgavrrlyral....errllrradavlvvs 137
                      ++ lv+ +             g  ++lr   + v +++ +l       +l++a +++++s
       KIR65971.1 236 DTQLVLLAGapdtaeiaaeveGlvTELRAKRSGVVWVAEMLpkheVIQVLTHATVFVCPS 295
                      222222221222222222221211223333444555555554333336666666666665 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.076
  Glyco_trans_4_4  14 LaarGheVtvltpapapgapeleedgvrvhrlpvprrps...pladla.alralrrll.r 68 
                      L+a  +e  v+++a  +  pe+++dg +   +p+  + +   ++ d++ ++++l++++ r
       KIR65971.1 305 LEAMACETAVVATATGGI-PEVVADGETGLLVPIEQAADgsgTPLDPQrFVADLAAAInR 363
                      777778888888865555.55999999999999777765222333332255555555432 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.2   1.4e+04      70      83 ..      86      99 ..      72     103 .. 0.78
   2 !   34.3   0.2   1.1e-11   2.4e-08       2      89 ..     291     394 ..     289     397 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.2
  Glyco_trans_1_2 70 aeaarervlaehty 83
                     a+ a  +v   ht+
       KIR65971.1 86 AACAGTDVVHSHTW 99
                     67778888888888 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1.1e-11
  Glyco_trans_1_2   2 vLnpsrsespnlrlfEaaacGafaltddaegleelftpgk..................evilfe.dleelaekiryllanpeerraiaeaarer 76 
                      ++ ps +e +  +++Ea+ac + ++++++ g++e + +g+                  +    +  +++la++i+++la+p+++ ++++a+r r
       KIR65971.1 291 FVCPSVYEPMGIVNLEAMACETAVVATATGGIPEVVADGEtgllvpieqaadgsgtplD---PQrFVADLAAAINRVLADPAKAGELGRAGRVR 381
                      556889999999***************************************99885442...3345789************************* PP

  Glyco_trans_1_2  77 vlaehtydhraeq 89 
                      + +++++d  a++
       KIR65971.1 382 AVEHFSWDAIAAR 394
                      ********99876 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.013        29       4      38 ..      15      47 ..      12      59 .. 0.88
   2 !   17.9   0.3   8.9e-07     0.002     125     231 ..      84     168 ..      60     173 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.013
  Glyco_transf_5  4 fvasEvaplaktGGLadvvgaLpkaLaklghdvrv 38
                     ++ E++p    GG + +v+ L+++L++l  dvrv
      KIR65971.1 15 LLTREYPP-EVYGGAGVHVEYLARELRRLA-DVRV 47
                    6899**99.99***************9986.9988 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 8.9e-07
  Glyco_transf_5 125 lleklgwkpdvihahDWhtalvpallkelykerglfkkiktvftiHNlayqgrfpkdel.aalglpaedfekldglefygkvnflk.agivyada 217
                     ++     + dv+h h W++ l++  +k l+        ++ v+t H+l+  + +++++l     l                 ++ + ++  +ada
      KIR65971.1  84 MAAA-CAGTDVVHSHTWYANLAGHTAKLLH-------GVPHVVTAHSLEPLRPWKAEQLgGGYALS----------------SWCErTAYEAADA 154
                     2222.4469*************99999985.......4*************999999985555555................4555488899999 PP

  Glyco_transf_5 218 vttVSptyakEilt 231
                     +++VS  +  ++l 
      KIR65971.1 155 IIAVSAGMRADVLA 168
                     99999888887765 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.3e-06    0.0051      74     138 ..      90     158 ..      27     159 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.3e-06
  Glyco_trans_4_2  74 kPDvvhahyakpygllgslaarlsgvipvvlsvwGldvlkfpkksk......lkklllklalkkatkvist 138
                      + Dvvh h+ +  +l+g  a++l+g +p v++++ l  l+  k+ +      l  +++++a++ a+++i+ 
       KIR65971.1  90 GTDVVHSHT-WYANLAGHTAKLLHG-VPHVVTAHSLEPLRPWKAEQlgggyaLSSWCERTAYEAADAIIAV 158
                      66*******.7679***99999999.888999998998766666666667878888************986 PP

>> DUF3492  Domain of unknown function (DUF3492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.5    0.0014       3.2     166     205 ..      84     122 ..      59     124 .. 0.83
   2 ?    3.8   0.0     0.019        41     235     257 ..     141     163 ..     132     168 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0014
     DUF3492 166 laeelpkadvyHavstGyAgllgallkerkgtpllltEHG 205
                 +a+    +dv+H++ t yA l g  +k  +g+p ++t H 
  KIR65971.1  84 MAAACAGTDVVHSH-TWYANLAGHTAKLLHGVPHVVTAHS 122
                 68888899****97.78********************995 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.019
     DUF3492 235 feslgrlvYeaadkiitlyeknr 257
                   +  r++Yeaad+ii+++ + r
  KIR65971.1 141 SSWCERTAYEAADAIIAVSAGMR 163
                 678899***********998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3095.21
//
Query:       KIR65972.1  [L=410]
Description: glucose-1-phosphate adenylyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-67  228.3   0.0    1.3e-67  228.0   0.0    1.1  1  NTP_transferase  Nucleotidyl transferase
      2e-08   34.7   0.0    3.2e-08   34.1   0.0    1.3  1  NTP_transf_3     MobA-like NTP transferase domain
  ------ inclusion threshold ------
      0.012   14.5   0.0        3.1    6.7   0.1    2.4  2  Fucokinase       L-fucokinase
      0.054   13.2   0.1      0.054   13.2   0.1    3.3  4  Hexapep          Bacterial transferase hexapeptide (six repea


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.0   0.0   2.8e-71   1.3e-67       2     245 ..       7     275 ..       6     278 .. 0.97

  Alignments for each domain:
  == domain 1  score: 228.0 bits;  conditional E-value: 2.8e-71
                      EEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGT......SEEEEEEESS--....B CS
  NTP_transferase   2 avILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfg......vevlialepegk....g 85 
                      a++LaGG+G+RL+PLt ++ak++vp++g +r+++++ls+lan+g+ + ivvltq++s++++++++ +++++      v+  +a+++ g     g
       KIR65972.1   7 AIVLAGGEGKRLMPLTADRAKPAVPFGGMYRMVDFVLSNLANAGFIK-IVVLTQYKSHSLDRHITMTWRMStllgnyVTPVPAQQRRGPwwfaG 99 
                      8**********************************************.*********************99*********************** PP

                      GGHHHHHTHHHHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEEC.TTSBEEEEECS-SSHSH......C CS
  NTP_transferase  86 tAdAvalaaelledeksdelvlvLggDhlikdayeeavkkaiekaakgtvtfgivpveeateyGviead.eegrverfvEKPkeaka......s 172
                      +AdA++++ +l++de+ +++v+v+g+Dh+++++ +++v+++i+++a +tv+ + +p + a ++Gvie++ +++r++ f EKP  a        +
       KIR65972.1 100 SADAIYQSFNLIHDEQ-PDYVIVFGADHIYRMDPRQMVDDHIASGAGVTVAGIRQPLSMADQFGVIEVGpDGRRIRAFREKPTDAVGlpdapdQ 192
                      ****************.6****************************88*********************6666***********9999999*99 PP

                      SEECCSEEEEETTHHHHHHH.CCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE..........-EEEXSSHHHHHHHHHHH CS
  NTP_transferase 173 elassGiYvfnsevllflak.dleelkrgedeitdilpkaleegkvalaflfkdae..........yWsDvGtldslleanekl 245
                       +as+G+Yvf++++ll++++ d+e+ ++++d++++i+p ++e+g+++++ +f+d+e          yW+DvGtlds+++a+++l
       KIR65972.1 193 IYASMGNYVFTTKALLEAVEqDAEDKTSKHDMGGSIIPMLVERGEANVY-DFRDNEvpgstdrdrgYWRDVGTLDSFYDAHMDL 275
                      9**********************************************97.999999*************************987 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   7.1e-12   3.2e-08       1     148 [.       7     218 ..       7     226 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 7.1e-12
                   EEEEEESS-TTT.....TTTHHHHCCCCC.CHHHHHHHHHCTT.-CEEEEECSH..CHHHH..............HHTTCTS-EEE-TTSS-SHHHH CS
  NTP_transf_3   1 aviLAGGrSsRm.....ggdKallplggk.pllervldalraagvdevvvvggd..eevla..............alarlgvrvvededpgkgplas 75 
                   a++LAGG+++R+      + K+ +p+gg  ++++ vl +l+ ag+ ++vv +++  +++ +              ++ + +++  + + + +g + +
    KIR65972.1   7 AIVLAGGEGKRLmpltaDRAKPAVPFGGMyRMVDFVLSNLANAGFIKIVVLTQYksHSLDRhitmtwrmstllgnYVTPVPAQQRRGPWWFAGSADA 103
                   79**********6666557*******88658*********************994333333666677666655556666788888889999999999 PP

                   HHHHHHH..H.SSSCEEEEETT-TT--HHHHHHHHHCHHHHTSSEEEEESSSEE..........................................E CS
  NTP_transf_3  76 laaalra..aadadavlvlacDmPlltpelverllaaaaasgadvvvptyeger..........................................g 128
                   ++   +    ++ d+v+v+ +D+++  +   +++++ + asga v+v+  ++                                            g
    KIR65972.1 104 IYQSFNLihDEQPDYVIVFGADHIY--RMDPRQMVDDHIASGAGVTVAGIRQPLsmadqfgvievgpdgrrirafrekptdavglpdapdqiyasmG 198
                   9999876325599**********88..8889999999999999999988875447777777788888888888888888888888888888888887 PP

                   ECCEEEGGGHHHHHHHCTHT CS
  NTP_transf_3 129 hpllfrarllsalaallgdq 148
                   ++++  ++ll+a+++ ++d+
    KIR65972.1 199 NYVFTTKALLEAVEQDAEDK 218
                   77777888888877776665 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0018       8.1      19      98 ..      84     169 ..      75     184 .. 0.75
   2 ?    6.7   0.1   0.00068       3.1     275     316 ..     329     370 ..     310     401 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0018
  Fucokinase  19 tslPleepgepveql..ldlllaiyidfpkrmkpGvlvtssDvlllfdseeisfdka....gvtalavpstldigtnHGVfvlddq 98 
                 t++P ++  +p +     d + + +  +  + +  v+v  +D +  +d  ++  d+     gvt+  ++++l+++ + GV+ + ++
  KIR65972.1  84 TPVPAQQRRGPWWFAgsADAIYQSFNLIHDEQPDYVIVFGADHIYRMDPRQMVDDHIasgaGVTVAGIRQPLSMADQFGVIEVGPD 169
                 6667666666655556666777777556667788899*******99999999888877888*******************988777 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00068
  Fucokinase 275 vvinSvlessvsvgegsviehsslkgnvsigsnsivsglele 316
                 +v nS+++++v+v   + +  s l ++v+ig + +v    l+
  KIR65972.1 329 LVENSIVSPKVKVHSWAHVDGSVLMEGVDIGRHAVVRRAILD 370
                 334444444444444444444444444444444444333333 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       2.5   1.1e+04      29      35 ..     143     149 ..     143     150 .. 0.64
   2 ?   -1.6   0.0      0.56   2.5e+03      26      35 ..     317     326 ..     316     327 .. 0.67
   3 ?   13.2   0.1   1.2e-05     0.054       3      35 ..     334     365 ..     332     366 .. 0.76
   4 ?    1.1   0.0     0.082   3.7e+02       9      23 ..     368     382 ..     365     382 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.5
                 ETTEEEE CS
     Hexapep  29 gagvvig 35 
                 gagv+++
  KIR65972.1 143 GAGVTVA 149
                 6777776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.56
                 EEEETTEEEE CS
     Hexapep  26 vkIgagvvig 35 
                 + + +g+vi 
  KIR65972.1 317 SMVSPGAVIS 326
                 5677888886 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 1.2e-05
                 EEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   3 vIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 ++  +v+++++a++ ++ ++ ++v Ig+++v++
  KIR65972.1 334 IVSPKVKVHSWAHV-DGSVLMEGVDIGRHAVVR 365
                 66789999998888.777788888888888886 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.082
                 EE-TTEEEETTEEE- CS
     Hexapep   9 lIgpfaviggnVkIG 23 
                 ++++++++ ++++IG
  KIR65972.1 368 ILDKNVIVPEGAEIG 382
                 456666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3193.27
//
Query:       KIR65973.1  [L=547]
Description: phosphoglucomutase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-37  126.7   0.0    1.2e-36  125.4   0.0    1.6  2  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
    4.5e-29  101.0   0.0      1e-28   99.8   0.0    1.6  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
      1e-11   45.4   0.1    2.6e-11   44.1   0.1    1.7  1  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
    3.7e-10   39.8   0.1    1.6e-09   37.8   0.0    2.0  2  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0   2.8e-40   1.2e-36       2     134 ..      39     180 ..      38     183 .. 0.97
   2 ?   -3.2   0.0       1.4   6.5e+03     107     133 ..     494     521 ..     486     524 .. 0.74

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 2.8e-40
                 GGBBTTCEEEECCHCTBSCCHHHHHHHHHHHHCHHCSTS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEE...EB-HHHHHHHHHHCC......E CS
   PGM_PMM_I   2 qkfgtsGlRgkvgegeltpelveklgqaiaeylkaeakkkkvvvGrDtRvssrelaealaaglaanGvevillg...llptPavsfairklk......a 91 
                 ++fgtsG+Rg+  ++ ++ +++++++qa+++y ++++ ++++++GrDt++ s  +a  ++++laanGv+v+l +   ++ptPavs+ai +++      +
  KIR65973.1  39 VSFGTSGHRGSSLRHAFNSDHILAVTQALCDYRRQQGLDGPLFLGRDTHALSAPAAVDALEVLAANGVTVLLDSrdgYTPTPAVSHAILTHNrgrtsgL 137
                 58**********************************************************************99999*************999****** PP

                 CEEEEE--TTS-TTCCCEEEEETTTCE--CHHHHHHHHHHCCT CS
   PGM_PMM_I  92 dagimitaSHnppeyngiKvylsnGgpispeveekIeaiieke 134
                 ++gi+it+SHnpp++ g+K+++ +Ggp++++v+++I+++++++
  KIR65973.1 138 ADGIVITPSHNPPDDGGFKYNPTHGGPADSDVTRWIQDRANAI 180
                 ***************************************9987 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.4
                 CCEEEEETTTCE--CHH.HHHHHHHHCC CS
   PGM_PMM_I 107 ngiKvylsnGgpispev.eekIeaiiek 133
                  g+Kv +++G  + ++  +e +++i+++
  KIR65973.1 494 GGLKVTTESGWFAARPSgTEDVYKIYAE 521
                 6899999999877766668888888765 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.0   2.2e-32     1e-28       1     112 [.     321     439 ..     321     441 .. 0.95

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 2.2e-32
                  HHHHHHHHHHHHHHCH..CSTTTCEEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHTTECEEEETTCEEEETTT.....BSS--HHHHHHH CS
  PGM_PMM_III   1 dgdqllallakyllee..klkpgagvvktvmtslalervakklgiklvetkvGdkyvleemkeegavlGgEeSghiiflde.....attkDGilaall 91 
                  +++++la+++ +l+++  ++ p+a+v kt+++s++++rva++lg++l+e++vG+k+++  + ++++ +GgEeS++++fl++     +t+kDGil +ll
   KIR65973.1 321 NPNHYLAVAIGHLFRTrpEWGPDAAVGKTLVSSSMIDRVAADLGRPLLEVPVGFKWFVPGLLDGSVGFGGEESAGASFLRRdgstwTTDKDGILLCLL 418
                  689**********8888**************************************************************9999998889********* PP

                  HHHHHHHHTS-HHHHHHHHHH CS
  PGM_PMM_III  92 vleilaetgkslselleellk 112
                  ++ei+a+tgk++se  +el  
   KIR65973.1 419 AAEIIATTGKTPSEHWAELAG 439
                  **************9988765 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.1   5.7e-15   2.6e-11       2     103 .]     210     317 ..     209     317 .. 0.95

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 5.7e-15
                 HHHHHGGGTS-HHHHHHHT-EEEEE-TT-TTHHHHHHHHHHTT-EEEES-----TT-TT......SS----TT-TTTTHHHHGGGGG-SEEEEE-TTS- CS
  PGM_PMM_II   2 aYiealkekvdseaikksglkvvidplhGaggeilkellkelgvdvvelnaepdpdfpt......kapnpeekealkllielvkkegadlglafDgDaD 94 
                  Y+++l +++d +a + +g+++ +dpl+Ga+  +++e+ ++  +d++ +n + dp++        + +++++++  ++++ ++ + ++++   +D DaD
  KIR65973.1 210 HYVDDLPAALDLDAVRAAGVRIGADPLGGASVAYWGEIAQRHRLDLTVINPTVDPTWRFmtldgdGKIRMDCSSPNAMASLIAARADYQVSTGNDADAD 308
                 6******************************************************988888999999*****9989999999***************** PP

                 BEEEEETTE CS
  PGM_PMM_II  95 RlgvvderG 103
                 R+g+v+++G
  KIR65973.1 309 RHGIVTPDG 317
                 *****9987 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.1   4.7e+03      20      39 ..      93     108 ..      85     109 .. 0.75
   2 !   37.8   0.0   3.6e-13   1.6e-09      18      72 ..     485     539 ..     454     541 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
                 CTTHHCCCCCCCCGCCEEEE CS
  PGM_PMM_IV  20 lkvasikeglkilledGrrl 39 
                 ++v    ++l++l+++G+++
  KIR65973.1  93 AAV----DALEVLAANGVTV 108
                 444....9999999999876 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 3.6e-13
                 CCCTTHHCCCCCCCCGCCEEEE.EEEETTCCEEEEEEEES.SHHHHHHHHHHHHHH CS
  PGM_PMM_IV  18 allkvasikeglkilledGrrlavRpSGTepllrvyvEak.sdeelarlaeevael 72 
                 a+ +++  ++glk+++e G+++  RpSGTe++ ++y+E+    e+lar++ee  el
  KIR65973.1 485 AAPGNGAAIGGLKVTTESGWFA-ARPSGTEDVYKIYAESFqGPEHLARIQEEAKEL 539
                 3333334799************.****************************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3566.38
//
Query:       KIR65974.1  [L=314]
Description: GDP-D-mannose dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-51  175.5   0.0    1.4e-51  175.3   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    3.3e-44  151.6   0.0    3.9e-44  151.4   0.0    1.0  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
      5e-20   71.7   0.0    6.7e-20   71.2   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
      5e-12   45.6   0.0    4.2e-11   42.5   0.0    2.1  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    1.4e-10   40.8   0.0    1.6e-10   40.5   0.0    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
    5.8e-08   32.8   0.0    9.3e-08   32.2   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding
    5.2e-05   22.5   0.6      0.052   12.7   0.0    2.6  2  NAD_binding_4    Male sterility protein
    0.00085   18.9   0.1     0.0021   17.6   0.1    1.6  2  NmrA             NmrA-like family
     0.0067   16.5   0.4      0.018   15.1   0.3    1.7  2  Ldh_1_N          lactate/malate dehydrogenase, NAD binding do


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.3   0.0   7.1e-55   1.4e-51       1     240 [.       3     238 ..       3     239 .. 0.93

  Alignments for each domain:
  == domain 1  score: 175.3 bits;  conditional E-value: 7.1e-55
                 EEEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg..yevigldrlssasntarledl..elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgt 95 
                 i+VtG++GfiGs+l+++l+  g  ++++++d ls++s   +l dl  +l  + ++dr+ l+++++  ++ +v+hl+a g+v++s+ dp +  ++n+ gt
  KIR65974.1   3 IVVTGGAGFIGSNLLHELAVLGeaHDLVAVDDLSTGS-LDNLGDLpvRLLVGSVLDRELLDEAMA--GAAVVVHLGALGSVPRSIADPLRSHHANATGT 98 
                 89******************999999*******5554.555666689******************..9******************************* PP

                 HHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT.S-TTSTTSHHHHHHHHH CS
   Epimerase  96 lnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGpr.ngegevsrvipalirki 193
                 l++leaar++ v + + +sSs+vYG+++  p+ et+      p spYa++Kla e ++ aya  ygl+++ +r fn++Gpr   ++  + v+p++++ +
  KIR65974.1  99 LTVLEAARRHAVPQTILASSSSVYGANPVLPRRETL---RPMPMSPYAVSKLATEAYANAYASCYGLSVLPFRFFNVFGPRqAADHAYAAVVPRFVSAA 194
                 *************************99999******...788***************************************666666************ PP

                 HTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEE CS
   Epimerase 194 legkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyni 240
                 l+g+ ++ ++gdg + Rdf yv  v  +i+ ++++  +  +++++n+
  KIR65974.1 195 LAGR-PLEIFGDGLQTRDFTYVGSVTAVIVDAIRR--RVCTPDTVNL 238
                 ****.************************999998..5556777776 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.4   0.0     2e-47   3.9e-44       2     271 ..       5     262 ..       4     287 .. 0.90

  Alignments for each domain:
  == domain 1  score: 151.4 bits;  conditional E-value: 2e-47
                    EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHHH CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPey 97 
                    +TG+aGfiGs+l++ L   g   h +v  +++ +tg++++l + p       ++l  g + D++ l++++a +    v++L+A   V++s+ +P +
     KIR65974.1   5 VTGGAGFIGSNLLHELAVLGE-AHDLVAVDDL-STGSLDNLGDLP-------VRLLVGSVLDRELLDEAMAGA--AVVVHLGALGSVPRSIADPLR 89 
                    9***************99975.6778777765.89******9765.......68******************9..68******************* PP

                    HHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS-TT.S CS
  GDP_Man_Dehyd  98 taevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhesprrget.f 192
                       +n++Gtl++Lea+r++ +    + + aS+s vYG     p +Et +  P sPYa++Kl+ +  + +y   ygl ++  ++fn  +pr+ ++  
     KIR65974.1  90 SHHANATGTLTVLEAARRHAVP---QTILASSSSVYGANPVLPRRETLRPMPMSPYAVSKLATEAYANAYASCYGLSVLPFRFFNVFGPRQAADhA 182
                    *******************985...5678**************************************************************98537 PP

                    CCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHC..SS---EEE-TT-EEECHHCHHCCHHCCCHHHH CS
  GDP_Man_Dehyd 193 vtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqq..dkpedyviatgethsvrefvelaflelgktie 271
                        ++r+v+ +++g+ +  ++G++ ++Rd+++v  +  +++ ++++   +p+++++a ge  s+ ++v    + lg+++e
     KIR65974.1 183 YAAVVPRFVSAALAGR-PLEIFGDGLQTRDFTYVGSVTAVIVDAIRRrvCTPDTVNLAFGERISLLDLVAELEAVLGRRLE 262
                    8899**********98.55568******************999998755689************99999877777777665 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   3.4e-23   6.7e-20       1     230 [.       4     227 ..       4     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 3.4e-23
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvag.kltedeimkvnvkGTrn 98 
                 vvtGgaGF+G++l +eL  l+e++++ ++D     +l ++l  + v+ ++ g v+d + l+ea+ g+ vv+hl +l  v        +  ++n  GT +
  KIR65974.1   4 VVTGGAGFIGSNLLHELAVLGEAHDLVAVDDLSTGSL-DNLGDLPVR-LLVGSVLDRELLDEAMAGAAVVVHLGALGSVPRsIADPLRSHHANATGTLT 100
                 8*********************999999986555555.9********.******************************9883556678999******** PP

   3Beta_HSD  99 vleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdk......llvp 191
                 vlea++++ v+  +  Ss +v g     +++l   E+  + ++++++y+ sK   E++   aN         l     R   ++G+++        +vp
  KIR65974.1 101 VLEAARRHAVPQTILASSSSVYGA----NPVLPRRET--LRPMPMSPYAVSKLATEAY---ANAYASCY--GLSVLPFRFFNVFGPRQAadhayaAVVP 188
                 *********************999....899966555..56899************97...77733344..59999**********9852222225788 PP

   3Beta_HSD 192 llkqlaklglalfkigdeevlsdrvYvgNvawahilAar 230
                 +++ +a  g  l   gd  ++ d++Yvg v+ +++ A r
  KIR65974.1 189 RFVSAALAGRPLEIFGDGLQTRDFTYVGSVTAVIVDAIR 227
                 9999999999**********************9999887 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   2.1e-14   4.2e-11       1     248 [.       3     258 ..       3     268 .. 0.73

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 2.1e-14
                      EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlv 93 
                      ++vtG++G iGs+l+++++   +++ ++ ++   l+  ++++       +  l   +  ++g+v d+e l++a+   +  vv+h  Al  VP  
       KIR65974.1   3 IVVTGGAGFIGSNLLHELAVLgEAHDLVAVDD--LSTGSLDNL-----GD--L--PVRLLVGSVLDRELLDEAMA--GAAVVVHLGALGSVPRS 83 
                      79***************998867777766654..444444432.....23..2..233569**************..***************** PP

                      HHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGG..S..........S..--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETT CS
  Polysacc_synt_2  94 eenpleaiktNvlgtenvieaaieagvkkvvliStDKA..v..........n..PtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlg 173
                         pl   + N +gt +v+eaa ++ v + +l S+     +          +  P++ + ++K+++e ++ a+a+        ++  Rf NV+g
       KIR65974.1  84 IADPLRSHHANATGTLTVLEAARRHAVPQTILASSSSVygAnpvlprretlRpmPMSPYAVSKLATEAYANAYASCY---GLSVLPFRFFNVFG 174
                      ********************************998764222111222222222245667777777777777777766...68888899999999 PP

                      GT.......TSSHHHHHHHHHTTSSEEES.-TT-EEEEE-HHHHHHHHHHHHHH.--SS-EEEE--.-EEEHHHHHHHH..... CS
  Polysacc_synt_2 174 Sr.......GSviplFkkqikeggpvtvT.dpemtRyfmtieeavqLvlqalal.akggeifvldmGepvkivdlakalielsg 248
                       r         v+p F +   +g p+ +  d   tR f  +   + +++ a+ +   + +   l  Ge ++++dl+ +l ++ g
       KIR65974.1 175 PRqaadhayAAVVPRFVSAALAGRPLEIFgDGLQTRDFTYVGSVTAVIVDAIRRrVCTPDTVNLAFGERISLLDLVAELEAVLG 258
                      773333333579999999999999999861445588888888888888888755144567777888888888888888876666 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   8.2e-14   1.6e-10       1     205 [.       1     234 [.       1     303 [. 0.84

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 8.2e-14
                    EEEEEESTTSHHHHHHHHHCTT..TSEEEEEE-TT................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlae..eglevlaltre................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavn 78 
                    mki+vtG+ G +Gs+L ++la   e ++++a++                     + d+e ++e+++    +vvv+++A   v +   ++ +++++n
     KIR65974.1   1 MKIVVTGGAGFIGSNLLHELAVlgEAHDLVAVDDLstgsldnlgdlpvrllVGSVLDRELLDEAMAG--AAVVVHLGALGSVPRSIADPLRSHHAN 94 
                    89*****************997335567888855568888887777555555555555555555555..679************************ PP

                    THHHHHHHHHHHHCT-E.EEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHH....H-SSEEEEEE-SEESS......SSS-HHHHH CS
  RmlD_sub_bind  79 aeavealAeaaaavgal.LihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavla....agkkalivRtswvyge......kgknfvktm 163
                    a+++ ++ eaa+++ ++  i  S+  V+ ++   p +e+ ++ P++ Y+ +Kla E   +a    +g  +l +R+  v+g            v ++
     KIR65974.1  95 ATGTLTVLEAARRHAVPqTILASSSSVYGANPVLPRRETLRPMPMSPYAVSKLATEAYANAyascYGLSVLPFRFFNVFGPrqaadhAYAAVVPRF 190
                    ***************9747999***********************************9998654444566778******98555333334456677 PP

                    HHHHHH-SEEEEESS..-EE--EEHHHHHHHHHHHHHHCHH.GG CS
  RmlD_sub_bind 164 lrlakereelkvvaD..qlgsPTsardlAevllqllekaaeeke 205
                    ++ a    +l+++ D  q++  T++ ++ +v+++++++++++++
     KIR65974.1 191 VSAALAGRPLEIFGDglQTRDFTYVGSVTAVIVDAIRRRVCTPD 234
                    8888999999999998888999***********99999998654 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   4.7e-11   9.3e-08       1     132 [.       7     154 ..       7     165 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 4.7e-11
                     TTTSHHHHHHHHHHHHC-.T-EEEEEETT..HHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-.....--TCC...........HHH CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.ghevtalvRn..peklaeleaeeglevvegdvtdvedlaealkgadaVvsal.....ggggk...........dee 76 
                     G+ G +G+ l++el+  g  h+++a+  +  + +l++l  +  +++++g+v+d e l ea++ga +Vv  +         +           +++
      KIR65974.1   7 GGAGFIGSNLLHELAVLGeAHDLVAV-DDlsTGSLDNLG-DLPVRLLVGSVLDRELLDEAMAGAAVVVHLGalgsvP---RsiadplrshhaNAT 96 
                     999*************9988888876.442256777776.5789********************9998877555440...144444444444667 PP

                     HHHHHHHHHHHCT--EEEEEEETTTTSGCG..CHHHHHHHHCCHHHHHHHHHHHHHHH CS
  NAD_binding_10  77 gaknivdaakeagvkRfvlvsaigvgdevp..gefgewnkellkaylaakraaeellr 132
                     g+ ++++aa+++ v + +l s+  v+   p   + +++    +++y+  k a e++ +
      KIR65974.1  97 GTLTVLEAARRHAVPQTILASSSSVYGANPvlPRRETLRPMPMSPYAVSKLATEAYAN 154
                     7***********************9964331133444445578999999999888765 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.2    0.0011       2.1       1      17 [.       5      21 ..       5      32 .. 0.87
   2 !   12.7   0.0   2.6e-05     0.052      76     202 ..      56     168 ..      53     222 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0011
                   EE-TTSHHHHHHHHHHH CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLL 17
                   +TG+ GF+G+ Ll++L 
     KIR65974.1  5 VTGGAGFIGSNLLHELA 21
                   7*************995 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.6e-05
                    --HHHHHHHHHH--EEEE--SS-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEE CS
  NAD_binding_4  76 LseedlqelaeevdviihsaAtvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederak 168
                    L+ e l+e ++   v++h +A  ++ +++ +      +N +Gt  vle a++ +  +++   S++ v+g++                      r++
     KIR65974.1  56 LDRELLDEAMAGAAVVVHLGALGSVPRSIADplrSHHANATGTLTVLEAARRHAVPQTI-LASSSSVYGANPVL-----------------PRRET 133
                    67788888899999***********9999994334569*************99999555.55555555555522.................23344 PP

                    TTTCCC.HHHHHHHHHHHHHHHHHHHH---EEEEE CS
  NAD_binding_4 169 lkglpn.tYeqsKalaEklvrearrrsglpvvivR 202
                    l+ +p   Y  sK + E   +++++  gl v+ +R
     KIR65974.1 134 LRPMPMsPYAVSKLATEAYANAYASCYGLSVLPFR 168
                    44444336666666666666666666666665555 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.1e-06    0.0021       1      70 [.       3      73 ..       3      86 .. 0.90
   2 ?   -2.9   0.0         2     4e+03     186     228 ..     215     260 ..     204     262 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
                EEESSTTSHHHHHHHHHHHH.HT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE CS
        NmrA  1 IlviGaTGrqGksvvrallk.aghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfs 70
                I+v+G++G +G+ + + l+   + +  + v d+++  +++l + +v l+ g++ d+e+l+ea+ g+ vv  
  KIR65974.1  3 IVVTGGAGFIGSNLLHELAVlGEAHDLVAVDDLSTGSLDNLGDLPVRLLVGSVLDRELLDEAMAGAAVVVH 73
                89***********999888855566667799************************************9975 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2
                 HHHHHHHHHHH.HHHH.TTEEEEE-.SEEE-HHHHHHHHHHHHTS- CS
        NmrA 186 iGafvikilkd.prkl.kgkrikla.gntlsgneivelfekkigkt 228
                 +G++++ i++  +r +     ++la g+ +s+ ++v+ +e ++g++
  KIR65974.1 215 VGSVTAVIVDAiRRRVcTPDTVNLAfGERISLLDLVAELEAVLGRR 260
                 7888888888765566666666666356788888888888888875 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.3   9.1e-06     0.018       1      77 [.       1      75 [.       1      83 [. 0.82
   2 ?   -2.2   0.0         2     4e+03      24      52 ..     239     269 ..     235     281 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.1e-06
                EEEEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS-EEEEE.SSGGGGTTESEEEE-- CS
     Ldh_1_N  1 vkvavvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistflsvkvkvse.keeealkdadvvvita 77
                +k++v+G aG+iG++l++ la  + a++l+ +D       G   +l +  + l+v +   +    ea+++a vvv  +
  KIR65974.1  1 MKIVVTGGAGFIGSNLLHELAVLGEAHDLVAVDDL---STGSLDNLGDLPVRLLVGSVLDReLLDEAMAGAAVVVHLG 75
                69******************998777777666654...6899999999999999988887767888999999998655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2
                 TSSSEEEEE-SSHH..HHHHHHHHHHHCHCC CS
     Ldh_1_N  24 kladelaLlDiake..kleGvaldlshistf 52 
                  +++++ LlD++ e  ++ G  l++ h+   
  KIR65974.1 239 AFGERISLLDLVAEleAVLGRRLETVHGPPR 269
                 5788899999998777888888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2332.53
//
Query:       KIR65975.1  [L=346]
Description: UDP-glucose 4-epimerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-92  308.9   0.0    3.4e-92  308.7   0.0    1.0  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    4.7e-22   78.6   0.2    7.2e-21   74.7   0.2    2.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    3.6e-17   62.3   0.0    4.8e-17   61.9   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    6.1e-14   52.2   0.0    4.5e-12   46.0   0.0    2.0  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.3e-13   50.4   0.0    2.3e-13   49.6   0.0    1.4  1  Polysacc_syn_2C  Polysaccharide biosynthesis protein C-termin
    8.1e-13   48.7   0.5    1.3e-12   48.0   0.5    1.3  1  NAD_binding_10   NAD(P)H-binding
      3e-08   33.1   0.0    1.8e-07   30.5   0.0    2.0  1  RmlD_sub_bind    RmlD substrate binding domain
    5.1e-07   29.8   0.0      1e-06   28.8   0.0    1.4  1  KR               KR domain
    6.8e-07   29.1   0.0    8.6e-07   28.7   0.0    1.2  1  NmrA             NmrA-like family
    1.1e-06   28.3   0.3    2.7e-06   27.0   0.3    1.6  1  adh_short        short chain dehydrogenase
    1.7e-06   27.4   2.8    0.00024   20.4   2.8    2.9  1  NAD_binding_4    Male sterility protein
    3.6e-05   23.5   0.9    0.00012   21.7   0.9    1.8  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
     0.0082   16.7   0.0      0.035   14.7   0.0    2.1  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.025   14.7   0.0       0.05   13.7   0.0    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
      0.061   13.6   0.1       0.15   12.3   0.1    1.7  1  TrkA_N           TrkA-N domain
       0.11   13.0   0.0       0.21   12.0   0.0    1.5  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma


Domain annotation for each model (and alignments):
>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.7   0.0   3.1e-95   3.4e-92       1     292 [.      10     284 ..      10     286 .. 0.97

  Alignments for each domain:
  == domain 1  score: 308.7 bits;  conditional E-value: 3.1e-95
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      vl+tG++Gs+G ++vr++l++ + ++++++rdE k++ +++ l     + +++++    +gdvrd +++e+a +  +vd+vfhaAAlK+VP +e
       KIR65975.1  10 VLITGGTGSFGLTMVRRLLDRGVGEVRVFSRDEAKQDLMRRAL----GDGRVRYY----VGDVRDFDSVERAAR--GVDFVFHAAALKQVPSCE 93 
                      89***************************************99....46678777....***************..****************** PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGGSS--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETTGTTSSHHHHHHHHHT CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieagvkkvvliStDKAvnPtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlgSrGSviplFkkqike 188
                      ++plea++tNvlg+ n ieaa+++gv +vv++StDKAv+P+n+mG++K+++ek++qa+a+++ +  t +++vR+GNV+ SrGSviplF +qik+
       KIR65975.1  94 FFPLEAVRTNVLGSANAIEAAVRNGVGSVVVLSTDKAVYPINAMGMSKAMMEKVAQAYARNHPHCGTVVSCVRYGNVMYSRGSVIPLFIDQIKA 187
                      **************************************************************99****************************** PP

                      TSSEEES-TT-EEEEE-HHHHHHHHHHHHHH--SS-EEEE--.-EEEHHHHHHHH..........SSSS-EEE----TT--SS-EEE-GGGGGG CS
  Polysacc_synt_2 189 ggpvtvTdpemtRyfmtieeavqLvlqalalakggeifvldmGepvkivdlakalielsgleekkeedieikitGlRpGEklyEeLlieeesve 282
                      g   tvTdp mtR++m+++++v+Lv +a+a+a+ g++fv ++  +++i dl+ al++l+++       ++ +++GlR+GEk  E++ ++ee ++
       KIR65975.1 188 GVVPTVTDPGMTRFLMSLADSVELVEHAFAHARPGDVFVRKA-AACTIGDLVAALCQLFEV------PVKYDVIGLRHGEKRTETMASSEELAR 274
                      ******************************************.***************964......6788*********************** PP

                      EEE-SSEEEE CS
  Polysacc_synt_2 283 etelekilra 292
                      ++++ +++r+
       KIR65975.1 275 AEDFGEFYRV 284
                      ****999986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.2   6.4e-24   7.2e-21       1     229 [.      10     219 ..      10     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 6.4e-24
                 EEEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC.....EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg.yevigldrlssasntarledl.....elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlq 93 
                 +l+tG+tG  G  +v++ll++g  ev +++r++ ++   r++ l     + + +d++d +++er+ +  ++d v+h+Aa + v+     p + +++n+ 
  KIR65975.1  10 VLITGGTGSFGLTMVRRLLDRGvGEVRVFSRDEAKQDLMRRA-LgdgrvRYYVGDVRDFDSVERAAR--GVDFVFHAAALKQVPSCEFFPLEAVRTNVL 105
                 79********************65699999996655555544.369999****************99..9***************************** PP

                 HHHHHHHHHHHHTCTEEEEEEE.GGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH...T-EEEEEEESEEESTTS-TTSTTSHHHH CS
   Epimerase  94 gtlnlleaarkagvkrllflsS.sevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy...glnaiilrlfnlyGprngegevsrvipa 188
                 g+ n +eaa ++gv  ++ ls+                     ++p ++ +++K+++ek+++aya+ +   g+ + ++r+ n++        + +vip 
  KIR65975.1 106 GSANAIEAAVRNGVGSVVVLSTdK------------------AVYPINAMGMSKAMMEKVAQAYARNHphcGTVVSCVRYGNVMYS------RGSVIPL 180
                 **********************22..................24788889****************99444566667777776544......48***** PP

                 HHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHH CS
   Epimerase 189 lirkilegkqevtllgdgtalRdflyveDvaeaillvlehv 229
                 +i +i++g   v  + d    R ++   D +e++ ++ +h 
  KIR65975.1 181 FIDQIKAGV--VPTVTDPGMTRFLMSLADSVELVEHAFAHA 219
                 *******98..555555556688888888888888888883 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   4.3e-20   4.8e-17       1     124 [.      11     134 ..      11     160 .. 0.84

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 4.3e-20
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespe.lleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvag.kltedeimkvnvkGTr 97 
                 ++tGg+G  G ++v++L++++ + evrv+  +e ++ l  ++   ++  +  gDv+d d++e+a +gvd v+h a+l +v + ++   e  + nv G  
  KIR65975.1  11 LITGGTGSFGLTMVRRLLDRG-VGEVRVFSRDEAKQdLMRRALGDGRVRYYVGDVRDFDSVERAARGVDFVFHAAALKQVPScEFFPLEAVRTNVLGSA 108
                 69*******************.8******86665441444555555556*******************************9978888899********* PP

   3Beta_HSD  98 nvleacvkagvrvlvYtSsaevvgpns 124
                 n +ea+v++gv  +v  S+ ++v+p  
  KIR65975.1 109 NAIEAAVRNGVGSVVVLSTDKAVYP-I 134
                 ***********************99.3 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0     4e-15   4.5e-12       1     261 [.      11     240 ..      11     277 .. 0.84

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 4e-15
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    LiTG++G  G  ++++Ll++g   + +  r+++ +      l+++     +++++ + gD++D +s+er+ + v  d v++ AA + V+     P 
     KIR65975.1  11 LITGGTGSFGLTMVRRLLDRGVGEVRVFSRDEAKQ-----DLMRRA--LGDGRVRYYVGDVRDFDSVERAARGV--DFVFHAAALKQVPSCEFFPL 97 
                    9********************98888888877644.....333322..235799*****************999..89************999*** PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS-TTS CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhesprrgetf 192
                    + +++nvlG ++ +ea+ + g+               G+v  v  + ++ +yP +  +++K++ + ++++y +++    ++  +   ++  +  + 
     KIR65975.1  98 EAVRTNVLGSANAIEAAVRNGV---------------GSV--VVLSTDKAVYPINAMGMSKAMMEKVAQAYARNHPHCGTVVSCV-RYGNVMYSR- 174
                    *****************99887...............333..344556789********************99877666655554.567776555. PP

                    CCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHC CS
  GDP_Man_Dehyd 193 vtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvel 261
                        i++++ +i++g   v+++ +   +R      D ve +  ++ + +p d+ + +    +++++v +
     KIR65975.1 175 -GSVIPLFIDQIKAGV--VPTVTDPGMTRFLMSLADSVELVEHAFAHARPGDVFVRKAAACTIGDLVAA 240
                    .679***********9..566689999************************************999875 PP

>> Polysacc_syn_2C  Polysaccharide biosynthesis protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0     2e-16   2.3e-13       1      48 []     287     334 ..     287     334 .. 0.99

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 2e-16
  Polysacc_syn_2C   1 DnRdLNYdkYfseGeekiseledYnShNTerLdveeikelLlkldyiq 48 
                      D+RdLNY+ Y++eG+     ++d++S N++rL+v ei +lL+ l++++
       KIR65975.1 287 DARDLNYALYVTEGDLGGRPVKDFTSANARRLSVPEIIALLRALPEVR 334
                      99*******************************************997 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.5   1.1e-15   1.3e-12       1     121 [.      14     152 ..      14     166 .. 0.78

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 1.1e-15
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH...CTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC.........HHHH...... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele...aeeglevvegdvtdvedlaealkgadaVvsalggggk.........deeg...... 77 
                     G+tG+ G   v++ll+rg  ev+++ R+++k + ++    + +++  +gdv d +++++a +g+d V+ a++ ++             +      
      KIR65975.1  14 GGTGSFGLTMVRRLLDRGVGEVRVFSRDEAKQDLMRralGDGRVRYYVGDVRDFDSVERAARGVDFVFHAAALKQVpsceffpleA--Vrtnvlg 106
                     9*****************77***********98544334569*****************************766666566665441..1445577 PP

                     HHHHHHHHHHCT--EEEEEEETTTTS..GCGCHHHHHHHHCCHHHH CS
  NAD_binding_10  78 aknivdaakeagvkRfvlvsaigvgd..evpgefgewnkellkayl 121
                      +n+++aa ++gv  +v++s+ ++    +++g  + + +++ +ay+
      KIR65975.1 107 SANAIEAAVRNGVGSVVVLSTDKAVYpiNAMGMSKAMMEKVAQAYA 152
                     ********************98775412344444444444444444 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.6e-10   1.8e-07       2     103 ..       9     129 ..       8     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.6e-10
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT....................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre....................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayav 77 
                    ++l+tG++G  G  ++++l  +g+  + + ++                      d++d ++v+++ +    d+v +aAA ++v  +E  + +a + 
     KIR65975.1   9 RVLITGGTGSFGLTMVRRLLDRGVGEVRVFSRdeakqdlmrralgdgrvryyVGDVRDFDSVERAARG--VDFVFHAAALKQVPSCEFFPLEAVRT 102
                    89********************9977777555599**************99999**********9998..789*********************** PP

                    HTHHHHHHHHHHHHCT-.EEEEEEEGG CS
  RmlD_sub_bind  78 naeavealAeaaaavga.lLihvStDy 103
                    n+ ++++  eaa + g+  ++ +StD 
     KIR65975.1 103 NVLGSANAIEAAVRNGVgSVVVLSTDK 129
                    ***************98568999**94 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   9.1e-10     1e-06       3      76 ..      10      78 ..       9      93 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 9.1e-10
                EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHH CS
          KR  3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeik 76
                +litGG+G++Gl+++r l+++g  ++ ++sR+    e++++l+++    + +v+++  Dv d d+ve++ + ++
  KIR65975.1 10 VLITGGTGSFGLTMVRRLLDRGVGEVRVFSRD----EAKQDLMRRALG-DGRVRYYVGDVRDFDSVERAARGVD 78
                69******************************....344445553333.469***************9988765 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   7.7e-10   8.6e-07       1     197 [.      10     219 ..      10     252 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 7.7e-10
                 EEESSTTSHHHHHHHHHHHHHT-.EEEEEES-S.-SHHHH.HHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG.............S-HHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallkagh.kvralvRdt.kselak.slkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy.............skeiedgk 83 
                 +l++G+TG+ G  +vr ll++g  +vr+  Rd+ k++l++ +l +  v    gd+ d +s+++a +gvd vf + +++             ++++    
  KIR65975.1  10 VLITGGTGSFGLTMVRRLLDRGVgEVRVFSRDEaKQDLMRrALGDGRVRYYVGDVRDFDSVERAARGVDFVFHAAALKqvpsceffpleavRTNVLGSA 108
                 79******************99758*******9755666515666666677***********************998899999**99888888888888 PP

                 HHHHHHHHHS-SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHC....TS-EEEEEE-EEGGG-BS..SS-SS-BEEE-TTS.-EEEEESS-TT CS
        NmrA  84 klvdAakeaGvkhfiySslgddndrsnaeepavphfdsKaeieeyvral....gipytfvyagffmenfls..llaqlkvgdtappedkvtllgpgnpk 176
                 + ++Aa++ Gv  ++  s  +++      +p   +  sKa  e++ +a         t v ++ + +++ s  ++ +l++++ + +    t+  pg   
  KIR65975.1 109 NAIEAAVRNGVGSVVVLSTDKAV------YPINAMGMSKAMMEKVAQAYarnhPHCGTVVSCVRYGNVMYSrgSVIPLFIDQIKAGV-VPTVTDPGM-- 198
                 88999999888877765555555......5666666666666665554444337777888898888866542256676666555554.666666666.. PP

                 S-EE-HHHHHHHHHHHHHHHH CS
        NmrA 177 avlldaeeDiGafvikilkdp 197
                  ++l++ +D  + v +++ + 
  KIR65975.1 199 TRFLMSLADSVELVEHAFAHA 219
                 344457777777777777665 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.3   2.4e-09   2.7e-06       2     180 ..       9     168 ..       8     173 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.4e-09
                 EEEEESTTSHHHHHHHHHHHHTT-.EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGa.kvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                  vl+tG+++ +G+ ++++l+ +G+ +v v++r e+k   +   l++   ++ ++ +Dv+d ++ve++ + +       d + + A+++++ + + +  e
  KIR65975.1   9 RVLITGGTGSFGLTMVRRLLDRGVgEVRVFSRDEAKQDLMRRALGD--GRVRYYVGDVRDFDSVERAARGV-------DFVFHAAALKQVPSCEFFPLE 98 
                 59*********************84677799999999888888886..79**************9998765.......*********766666666665 PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEES CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPG 180
                 +    + +N+ g  ++++a++++      G++v  s   + +p + +     sKa +++ +++ a+ +   g  v++v  G
  KIR65975.1  99 A----VRTNVLGSANAIEAAVRN----GVGSVVVLSTDKAVYPINAMG---MSKAMMEKVAQAYARNHPHCGTVVSCVRYG 168
                 4....679****99999999988....88*****99999999888775...599999999999999888888777777666 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   2.8   2.1e-07   0.00024       1     153 [.      12     145 ..      12     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.1e-07
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--S CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsaA 96 
                    +TG+TG  G  ++++LL++    ++ +  R + +++ ++R             l      r++ ++GD+ + +      ++++ a+ vd ++h aA
     KIR65975.1  12 ITGGTGSFGLTMVRRLLDRGVG-EVRVFSRDEAKQDLMRRA------------L---GDGRVRYYVGDVRDFD------SVERAARGVDFVFHAAA 85 
                    8****************99754.999999999998888888............3...3789********9876......9999************9 PP

                    S-S.ST...TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H CS
  NAD_binding_4  97 tvnfde...pykellrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvye 153
                      ++ +      e++r+Nv+G  + +e a +     +++  ST  +v++ +   +++ ++e
     KIR65975.1  86 LKQVPScefFPLEAVRTNVLGSANAIEAAVRNGVG-SVVVLSTdKAVYPINAMGMSKAMME 145
                    877665333234799**************988777.9******977776666666665555 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.9   1.1e-07   0.00012       5     177 ..      18     173 ..      14     189 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.1e-07
                   SHHHHHHHHHHHTT-.EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHH CS
  adh_short_C2   5 gIGraiAkalaeeGa.evvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdrald 100
                   + G  ++++l ++G  ev +  ++e++++ ++++  ++  +++  DV+d ++ve++++       ++D+++++a+  +    +++ ++ e    a+ 
    KIR65975.1  18 SFGLTMVRRLLDRGVgEVRVFSRDEAKQDLMRRALGDGRVRYYVGDVRDFDSVERAAR-------GVDFVFHAAALKQV--PSCEFFPLE----AVR 101
                   788899999999997468888888888999999999988999*******999988865.......69*********999..555555555....667 PP

                   HHTHHHHHHHHHHHHHCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCT CS
  adh_short_C2 101 vnlyslfllakaalplmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTl 177
                   +n+ + ++ ++aa+   ++g gs+v ls     ++v   na+g++Ka +e+++++ A++  + g  v +v  g +   
    KIR65975.1 102 TNVLGSANAIEAAV---RNGvGSVVVLSTD---KAVYPINAMGMSKAMMEKVAQAYARNHPHCGTVVSCVRYGNVMYS 173
                   89999988888885...4666*******99...4577779*******************9999999999988877655 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.1e-05     0.035       6      75 ..      15      90 ..       9      92 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.1e-05
                   TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC..........-EEECECHHHHHHH-SEEEE-S-HHHHH CS
  F420_oxidored  6 GaGnmgealasgllaagaqpheivvansrnpekaeelaeelg..........vkvtavdneeaaeeadvvvlavkpedve 75
                   G+G++g +++++ll +g    e++v  sr++ k + ++++lg          v+ +  + e aa+  d+v+ a   ++v+
     KIR65975.1 15 GTGSFGLTMVRRLLDRG--VGEVRVF-SRDEAKQDLMRRALGdgrvryyvgdVRDFD-SVERAARGVDFVFHAAALKQVP 90
                   9****************..9****77.**********************97766666.7889999******998887776 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.4e-05      0.05      11      85 ..       6      86 ..       2      90 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.4e-05
                  TT-EEEEE.S-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EE.....EEGCGHHHHHHT-SEEEE-SSS CS
  Shikimate_DH 11 kekkvlli.GaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiea.....lkleelkellaeadvvisatas 85
                  ++++vl+  G+G  +  +++ Ll++gv +v v+ R+ ++ + +++ l++ ++++     +++++++++ + +d v+ a a 
    KIR65975.1  6 AGRRVLITgGTGSFGLTMVRRLLDRGVGEVRVFSRDEAKQDLMRRALGDGRVRYyvgdvRDFDSVERAARGVDFVFHAAAL 86
                  56788888358******************************9999997776654222226899999999999999998765 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00013      0.15       5      58 ..      15      73 ..      10      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00013
                S-SHHHHHHHHHHHHTT.EEEEEEESSHHHHHHHHHTT....SEEEES-TTSHHHHHHT CS
      TrkA_N  5 GlGrvGrslaeeLsegg.kdvvvidkdeerveelreeg....levvvgdatdeevLeea 58
                G G +G +++++L ++g  +v v  +de++ + +r+      ++++vgd+ d + +e+a
  KIR65975.1 15 GTGSFGLTMVRRLLDRGvGEVRVFSRDEAKQDLMRRALgdgrVRYYVGDVRDFDSVERA 73
                89*************66645********8855555444344899********9999987 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00019      0.21       1      75 [.       9      85 ..       9      96 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00019
                    EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSG..GGTTTECEBEEE..GGGGGCTT-SEEEE-SC CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavk..aleegkdlkved..vdeeelkevdivflalp 75
                    +v i G+tG  G  ++r+L +   v +v+++s+++ a + l +++       +    v+d    e + ++vd+vf a+ 
      KIR65975.1  9 RVLITGGTGSFGLTMVRRLLD-RGVGEVRVFSRDE-AKQDLMRRALgdGRVRYYVGDVRDfdSVERAARGVDFVFHAAA 85
                    6899***************98.5688889999999.5555544443365555666666663234455599*****9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2559.57
//
Query:       KIR65976.1  [L=371]
Description: capsular biosynthesis protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-06   25.3   0.1    0.00043   19.8   0.1    2.4  1  Epimerase  NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.21   10.9   0.0       0.38   10.0   0.0    1.3  1  GPI        Glucose-6-phosphate isomerase (GPI)


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   4.8e-08   0.00043       3     223 ..       5     180 ..       3     183 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.8e-08
                 EETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHHH CS
   Epimerase   3 VtGatGfiGsalvkallekg.yevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnlle 100
                 +tGa Gf+G ++   + + g  e i l r                  dl +++al++ ++  ++d  +hlA+     ++  +pa+++  n++++  l+ 
  KIR65976.1   5 ITGAFGFLGWHTRVLVRALGwPEPILLGRA-----------------DLAEPAALADRLA--GVDRLVHLAG-----VNRGEPAEIAAGNIAVAEALAR 79 
                 677777777777666666663336666666.................9999999999999..8999999955.....5557888999999999999999 PP

                 HHHHH..TCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHHTTS CS
   Epimerase 101 aarka..gvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirkilegk 197
                  +r++   +k l+f+ S+      +                +pY+ +K+a+  ++ ++  + g++ +  rl +lyG++ g ++ ++v + + r +++g 
  KIR65976.1  80 SLRRCaqPPKTLVFANSV------QA------------GNGTPYGDSKAAAAAILADA--AAGCQLVDHRLPHLYGEH-GRPFYNSVTATFCRVLADGG 157
                 999886666699999992......22............45679************975..77889*************.****************9999 PP

                 SSEEEETTST-EEEEEEHHHHHHHHH CS
   Epimerase 198 qevtllgdgtalRdflyveDvaeail 223
                     + +  +    ++++ D+a a+l
  KIR65976.1 158 -HPEVRD--DRELHLVHATDAAAALL 180
                 .666666..44457889999888875 PP

>> GPI  Glucose-6-phosphate isomerase (GPI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   4.2e-05      0.38      85     144 ..     289     347 ..     276     353 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 4.2e-05
         GPI  85 EvYevlkGealmlLek.Peglkvddviv..vevkartvvivPPnygHvsinigeedLvmanlv 144
                 E + vl+G+a + L +  +g    +v+   v +++   v +P  ++H   n g+++L+++++ 
  KIR65976.1 289 ERFVVLRGRAEIRLRRvGHG----EVVCfpVSGNEPVLVDMPTMWVHDITNTGDDELLTLFWT 347
                 55667777777777775555....55551144455556667********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2588.35
//
Query:       KIR65977.1  [L=506]
Description: hypothetical protein TK50_11975 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.3    9.4   3.5        3.4    8.0   0.0    3.0  3  2TM       2TM domain


Domain annotation for each model (and alignments):
>> 2TM  2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00019       3.4      23      57 ..      38      72 ..      14      82 .. 0.71
   2 ?    0.1   0.8     0.057     1e+03      10      44 ..     225     266 ..     218     306 .. 0.64
   3 ?   -3.1   0.0      0.59   1.1e+04      42      57 ..     423     438 ..     416     444 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00019
         2TM 23 vniflilinl....gsswflwpilfWgiglllhalkvFg 57
                 ++++    +      +wf++p+++ gi +  +a++ F 
  KIR65977.1 38 SIALV----VcvpvLRHWFMVPTTLAGILIGTEAVRWFR 72
                22233....23456899*******************996 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.057
         2TM  10 ikgFyrhlvvYlivniflilinl.......gsswflwpilfW 44 
                 ++++++h ++ ++ +  + l ++       + s +lwp+l+ 
  KIR65977.1 225 RRALRKHTALLVLLICAMTLTQFfigglkgSRSSTLWPVLLA 266
                 666777777777777766666556677777555667766543 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.59
         2TM  42 lfWgiglllhalkvFg 57 
                  f  +gl++ al+ + 
  KIR65977.1 423 SFVAFGLVIRALQSYY 438
                 5677899998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3752.14
//
Query:       KIR65978.1  [L=399]
Description: glycosyl transferase family 1 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-27   94.6   0.1      1e-26   94.0   0.1    1.3  1  Glyco_trans_1_4  Glycosyl transferases group 1
    4.5e-25   88.1   0.0    6.5e-25   87.6   0.0    1.1  1  Glycos_transf_1  Glycosyl transferases group 1
    0.00045   20.5   0.0     0.0037   17.6   0.0    2.2  2  Glyco_trans_1_2  Glycosyl transferases group 1
  ------ inclusion threshold ------
       0.11   12.4   0.0       0.32   10.9   0.0    1.6  1  LpxI_N           LpxI N-terminal domain


Domain annotation for each model (and alignments):
>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.1   2.3e-30     1e-26       3     133 ..     213     351 ..     211     352 .. 0.91

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 2.3e-30
                      EEEEES---GG.GTHHHHHHHHHHHH.H..HEEEEEES---...HHHHHHHT..T-T.TEEEE---...THHHHHHHH-SEEEE--..---SHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkk..dvrlvivGdgp.rpeeleelaa..gleerveftGfv...edlaellaaadvfvaPs..egfglk 86 
                      v++  G +e+ +kg+d l+ea+++lr++  dvrlv  G g  + ++le+l+a  g+ +rv+f+G++   + l++ l++ad+fv+Ps  eg++ +
       KIR65978.1 213 VLMSAGTMEQLYKGIDTLIEALARLRAAglDVRLVHLGTGRlQ-HQLEKLVAdrGVIDRVTFAGWIqpgAPLRAKLDEADLFVMPSrtEGLPRA 305
                      78999***8877**************99766********9955.69*9988779999*********76666***************999***** PP

                      HHHHHHTT-EEEE-TGGGTTT--.TTSSEE--TT-HHHHHHHHHHHHH CS
  Glyco_trans_1_4  87 llEamaaglpvVatdvggiaevv.gengllvppgdpealaeailrLle 133
                      ll+ama +lp + t+vggi+e++  e+  lv+p+dp+ala ai+++l+
       KIR65978.1 306 LLDAMARALPAIGTNVGGIPELLpAED--LVDPDDPAALASAIAAMLA 351
                      *********************998887..9*************99885 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   1.5e-28   6.5e-25      16     165 ..     212     359 ..     202     366 .. 0.89

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 1.5e-28
                      EEEEEESS-TTT.TTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHC.ESEEEEEESSBSS-H CS
  Glycos_transf_1  16 kiilsvgrleke.KgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellkn.adifvlpsisEgfGi 107
                       ++ s g +e   Kg+d+li+a+a+l+++   +v+lv  G g  +++l+kl++ +++ d+v+f g + + +    +   ad+fv+ps++Eg++ 
       KIR65978.1 212 AVLMSAGTMEQLyKGIDTLIEALARLRAA-GLDVRLVHLGTGRLQHQLEKLVADRGVIDRVTFAGWIQPGAPLRAKLDeADLFVMPSRTEGLPR 304
                      5666777776644*************998.**************************************66655555555*************** PP

                      HHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHH CS
  Glycos_transf_1 108 vllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerl 165
                      +ll Ama  lp+i +n+gg++e++  ++   lv+p +++ala ai+ +l  +e+ ++ 
       KIR65978.1 305 ALLDAMARALPAIGTNVGGIPELLPAED---LVDPDDPAALASAIAAMLAAPERMAAA 359
                      ****************************...*******************99766554 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.26   1.2e+03      27      65 ..     194     236 ..     180     263 .. 0.73
   2 !   17.6   0.0   8.3e-07    0.0037       3      79 ..     294     369 ..     292     374 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.26
  Glyco_trans_1_2  27 tdda..egleelftpgkevilfe..dleelaekiryllanpee 65 
                      +dda  ++++ +++   e++l++  ++e+l + i+ l++  ++
       KIR65978.1 194 VDDAfvPAPRSIVRQPAEAVLMSagTMEQLYKGIDTLIEALAR 236
                      4455566777777777888888889999999999998764444 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 8.3e-07
  Glyco_trans_1_2   3 LnpsrsespnlrlfEaaacGafaltddaegleelftpgkevilfedleelaekiryllanpeerraiaeaarervla 79 
                      + psr e++   l++a+a   +a+ +   g++el+  + +++  +d++ la +i+++la pe+ +a ++++  r+++
       KIR65978.1 294 VMPSRTEGLPRALLDAMARALPAIGTNVGGIPELLPAE-DLVDPDDPAALASAIAAMLAAPERMAAASARNLSRARQ 369
                      558999999999***********************887.99999**********************99999988765 PP

>> LpxI_N  LpxI N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     7e-05      0.32      51     127 ..     251     329 ..     239     330 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7e-05
      LpxI_N  51 vgqlgklikaLk..regvtevvmaGkvekpklldlrpDlralkllaklkdrgddalLravveelekeGikvlgateilp 127
                  g+l++ ++ L   r  +++v++aG ++    l+ + D   l +++++++    alL a ++ l + G +v g  e+lp
  KIR65978.1 251 TGRLQHQLEKLVadRGVIDRVTFAGWIQPGAPLRAKLDEADLFVMPSRTEGLPRALLDAMARALPAIGTNVGGIPELLP 329
                 5666666655541133489**************************************************9999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3014.16
//
Query:       KIR65979.1  [L=346]
Description: UDP-glucose 4-epimerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-91  306.2   0.0    2.3e-91  306.0   0.0    1.0  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    2.6e-23   82.7   0.2    3.7e-22   79.0   0.1    2.3  2  Epimerase        NAD dependent epimerase/dehydratase family
    3.7e-16   59.0   0.1    5.4e-16   58.4   0.1    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    3.8e-14   52.8   0.0    2.7e-12   46.8   0.0    2.1  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    7.1e-13   48.8   0.7    1.1e-12   48.2   0.7    1.3  1  NAD_binding_10   NAD(P)H-binding
    6.5e-10   38.6   0.0    5.4e-09   35.6   0.0    2.0  1  RmlD_sub_bind    RmlD substrate binding domain
    2.8e-08   33.3   0.0    5.2e-08   32.5   0.0    1.5  1  Polysacc_syn_2C  Polysaccharide biosynthesis protein C-termin
    3.3e-08   33.4   0.1    4.1e-08   33.1   0.1    1.2  1  NmrA             NmrA-like family
    2.2e-07   30.9   0.1    3.9e-07   30.2   0.1    1.5  1  KR               KR domain
    5.8e-07   28.9   2.1      0.071   12.3   0.0    3.1  3  NAD_binding_4    Male sterility protein
    1.9e-05   24.2   0.3    4.8e-05   22.9   0.3    1.7  1  adh_short        short chain dehydrogenase
      4e-05   23.3   0.8      4e-05   23.3   0.8    1.8  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
       0.02   14.9   0.0      0.047   13.7   0.0    1.5  1  GPP34            Golgi phosphoprotein 3 (GPP34)
      0.023   14.7   0.0      0.051   13.6   0.0    1.6  1  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
      0.026   15.1   0.0      0.077   13.6   0.0    1.8  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
      0.063   13.4   0.1       0.77    9.9   0.0    2.3  2  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
       0.08   13.0   0.0       0.15   12.1   0.0    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.0   0.0   2.2e-94   2.3e-91       1     292 [.      10     284 ..      10     286 .. 0.97

  Alignments for each domain:
  == domain 1  score: 306.0 bits;  conditional E-value: 2.2e-94
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      vl+tG++Gs+G+++ r +l++ + ++++++rdE k++ ++++l    ++ ++ ++    igdvrd +++e+a +  +vd+vfhaAAlK+VP +e
       KIR65979.1  10 VLITGGTGSFGRAMARCLLDRGVGEVRVFSRDEAKQDVMRRTL----ADGRVGYY----IGDVRDYDSVERATR--GVDFVFHAAALKQVPSCE 93 
                      89***************************************98....35566556....***************..****************** PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGGSS--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETTGTTSSHHHHHHHHHT CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieagvkkvvliStDKAvnPtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlgSrGSviplFkkqike 188
                      ++pleai+tNvlg+ nvieaa ++gv +vv++StDKAv+P+n+mG++K+++ek++qa a+++ ++ t ++ vR+GNV+ SrGSviplF +qik+
       KIR65979.1  94 FFPLEAIRTNVLGSANVIEAADRNGVGSVVVLSTDKAVHPINAMGLSKAMMEKVAQAHARNRPRSGTVVSSVRYGNVMYSRGSVIPLFIEQIKA 187
                      **************************************************************9******************************* PP

                      TSSEEES-TT-EEEEE-HHHHHHHHHHHHHH--SS-EEEE--.-EEEHHHHHHHH..........SSSS-EEE----TT--SS-EEE-GGGGGG CS
  Polysacc_synt_2 189 ggpvtvTdpemtRyfmtieeavqLvlqalalakggeifvldmGepvkivdlakalielsgleekkeedieikitGlRpGEklyEeLlieeesve 282
                      g   tvTdp mtR++++++++v+Lv +a+++a+ g++fv ++  +++i dl+ al++++++       ++ +++GlR+GEk  E++ + ee ++
       KIR65979.1 188 GVVPTVTDPGMTRFLISLADSVELVEHAFQHARAGDVFVRKA-AACTIGDLVAALCQVFEV------PVKYDVIGLRHGEKRDETMASGEELAR 274
                      ******************************************.************999964......6788*********************** PP

                      EEE-SSEEEE CS
  Polysacc_synt_2 283 etelekilra 292
                      ++++ +++r+
       KIR65979.1 275 AEDFGDFYRV 284
                      *****99987 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.1   3.5e-25   3.7e-22       1     233 [.      10     223 ..      10     228 .. 0.86
   2 ?   -2.9   0.0       3.5   3.7e+03      23      44 ..     251     282 ..     239     307 .. 0.60

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 3.5e-25
                 EEEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC.....EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg.yevigldrlssasntarledl.....elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlq 93 
                 +l+tG+tG  G+a+++ ll++g  ev +++r++ ++   r+  l       + +d++d +++er+ +  ++d v+h+Aa + v+     p + i++n+ 
  KIR65979.1  10 VLITGGTGSFGRAMARCLLDRGvGEVRVFSRDEAKQDVMRRT-LadgrvGYYIGDVRDYDSVERATR--GVDFVFHAAALKQVPSCEFFPLEAIRTNVL 105
                 79********************65599998885555544444.35889999**************99..9***************************** PP

                 HHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH...T-EEEEEEESEEESTTS-TTSTTSHHHHH CS
   Epimerase  94 gtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy...glnaiilrlfnlyGprngegevsrvipal 189
                 g+ n++eaa ++gv  ++ ls+      d+            ++p ++ +++K+++ek+++a+a+     g+ + ++r+ n++  r       +vip +
  KIR65979.1 106 GSANVIEAADRNGVGSVVVLST------DK-----------AVHPINAMGLSKAMMEKVAQAHARNRprsGTVVSSVRYGNVMYSR------GSVIPLF 181
                 **********************......22...........24789999*************998764346777788888876555......8****** PP

                 HHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-S CS
   Epimerase 190 irkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagd 233
                 i++i++g   v  + d    R ++   D +e++ ++ +h +agd
  KIR65979.1 182 IEQIKAGV--VPTVTDPGMTRFLISLADSVELVEHAFQHARAGD 223
                 *******8..666666667799*****************76654 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.5
                 SEEEEEES-STTTTCHHCHHC..........E CS
   Epimerase  23 yevigldrlssasntarledl..........e 44 
                 y+vigl + +++++t +  +            
  KIR65979.1 251 YDVIGLRHGEKRDETMASGEElaraedfgdfY 282
                 88999998876666655544455556556553 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.1   5.1e-19   5.4e-16       1     122 [.      11     133 ..      11     152 .. 0.87

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 5.1e-19
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespe.lleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvag.kltedeimkvnvkGTr 97 
                 ++tGg+G  Gra+ + L++++ + evrv+  +e ++ +  ++   ++  +  gDv+d d++e+a++gvd v+h a+l +v + ++   e  + nv G  
  KIR65979.1  11 LITGGTGSFGRAMARCLLDRG-VGEVRVFSRDEAKQdVMRRTLADGRVGYYIGDVRDYDSVERATRGVDFVFHAAALKQVPScEFFPLEAIRTNVLGSA 108
                 69*******************.8******76654431444444445555*******************************99788888999******** PP

   3Beta_HSD  98 nvleacvkagvrvlvYtSsaevvgp 122
                 nv+ea+ ++gv  +v  S+ ++v p
  KIR65979.1 109 NVIEAADRNGVGSVVVLSTDKAVHP 133
                 ********************99988 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   2.5e-15   2.7e-12       1     261 [.      11     240 ..      11     277 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 2.5e-15
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    LiTG++G  G  +a+ Ll++g   + +  r+++ +    ++l       +++++  + gD++D +s+er+ + v  d v++ AA + V+     P 
     KIR65979.1  11 LITGGTGSFGRAMARCLLDRGVGEVRVFSRDEAKQDVMRRTL-------ADGRVGYYIGDVRDYDSVERATRGV--DFVFHAAALKQVPSCEFFPL 97 
                    9********************988888888776442222233.......3578999****************99..89************999*** PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS-TTS CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhesprrgetf 192
                    + +++nvlG ++++ea+ + g+     ++  S               ++ ++P +  + +K++ + ++++  ++     +  + +  ++  +  + 
     KIR65979.1  98 EAIRTNVLGSANVIEAADRNGVG---SVVVLS--------------TDKAVHPINAMGLSKAMMEKVAQAHARNRPRSGT-VVSSVRYGNVMYSR- 174
                    ******************99973...344445..............557899**************99998776544333.33444666665444. PP

                    CCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHC CS
  GDP_Man_Dehyd 193 vtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvel 261
                        i++++ +i++g   v+++ +   +R      D ve +  ++q+ ++ d+ + +    +++++v +
     KIR65979.1 175 -GSVIPLFIEQIKAGV--VPTVTDPGMTRFLISLADSVELVEHAFQHARAGDVFVRKAAACTIGDLVAA 240
                    .579**********98..5566888899*************************9999999999999875 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.7   1.1e-15   1.1e-12       1     126 [.      14     153 ..      14     168 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 1.1e-15
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH...CTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC.........HHHH...... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele...aeeglevvegdvtdvedlaealkgadaVvsalggggk.........deeg...... 77 
                     G+tG+ Gr+ ++ ll+rg  ev+++ R+++k + ++   a+ ++    gdv d +++++a +g+d V+ a++ ++             +      
      KIR65979.1  14 GGTGSFGRAMARCLLDRGVGEVRVFSRDEAKQDVMRrtlADGRVGYYIGDVRDYDSVERATRGVDFVFHAAALKQVpsceffpleA--Irtnvlg 106
                     9*****************77***********98655444679*****************************766666666665440..1455577 PP

                     HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHH CS
  NAD_binding_10  78 aknivdaakeagvkRfvlvsaigvgdevpgefgewnkellkaylaakra 126
                      +n+++aa+++gv  +v++s+ ++ +  p +   + k +++++++a+++
      KIR65979.1 107 SANVIEAADRNGVGSVVVLSTDKAVH--PINAMGLSKAMMEKVAQAHAR 153
                     *********************99885..444445566777777777765 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   5.1e-12   5.4e-09       2     102 ..       9     128 ..       8     170 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 5.1e-12
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT....................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre....................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayav 77 
                    ++l+tG++G  G+++a+ l  +g+  + + ++                      d++d ++v+++ +    d+v +aAA ++v  +E  + +a + 
     KIR65979.1   9 RVLITGGTGSFGRAMARCLLDRGVGEVRVFSRdeakqdvmrrtladgrvgyyIGDVRDYDSVERATRG--VDFVFHAAALKQVPSCEFFPLEAIRT 102
                    89********************9977777555599***************9999***********999..789*********************** PP

                    HTHHHHHHHHHHHHCT-.EEEEEEEG CS
  RmlD_sub_bind  78 naeavealAeaaaavga.lLihvStD 102
                    n+ +++++ eaa + g+  ++ +StD
     KIR65979.1 103 NVLGSANVIEAADRNGVgSVVVLSTD 128
                    ****************9568999999 PP

>> Polysacc_syn_2C  Polysaccharide biosynthesis protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   4.9e-11   5.2e-08       1      48 []     287     334 ..     287     334 .. 0.98

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 4.9e-11
  Polysacc_syn_2C   1 DnRdLNYdkYfseGeekiseledYnShNTerLdveeikelLlkldyiq 48 
                      D R LNY+  + e  ++   l+d+nS  ++rLdv ++ +lL+++++i+
       KIR65979.1 287 DLRELNYASRVAEERVDCRYLSDFNSSTARRLDVPQLVALLRTIPEIR 334
                      89********************************************97 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.1   3.9e-11   4.1e-08       1     231 [.      10     251 ..      10     253 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 3.9e-11
                 EEESSTTSHHHHHHHHHHHHHT-.EEEEEES-S..-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG.............S-HHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallkagh.kvralvRdt..kselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy.............skeiedgk 83 
                 +l++G+TG+ G++++r ll++g  +vr+  Rd+  +    ++l++  v    gd+ d++s+++a +gvd vf + +++             ++++    
  KIR65979.1  10 VLITGGTGSFGRAMARCLLDRGVgEVRVFSRDEakQDVMRRTLADGRVGYYIGDVRDYDSVERATRGVDFVFHAAALKqvpsceffpleaiRTNVLGSA 108
                 79******************99758*******9744444567777777777***********************99889999*****99999999999* PP

                 HHHHHHHHHS-SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BS..SS-SS-BEEE-TTS.-EEEEESS-TTS-EE CS
        NmrA  84 klvdAakeaGvkhfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmenfls..llaqlkvgdtappedkvtllgpgnpkavll 180
                 ++++Aa + Gv  ++  s  +++   na  +++ + ++ a+   + r+     t v ++ + +++ s  ++ +l++++ + +    t+  pg    ++l
  KIR65979.1 109 NVIEAADRNGVGSVVVLSTDKAVHPINAMGLSKAMMEKVAQ--AHARNRPRSGTVVSSVRYGNVMYSrgSVIPLFIEQIKAGV-VPTVTDPGM--TRFL 202
                 ************99988888888777666666666555443..3445556667777777777655441157776666666664.667777777..4566 PP

                 -HHHHHHHHHHHHHHHHHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS-EEE CS
        NmrA 181 daeeDiGafvikilkdprklkgkriklagntlsgneivelfekkigktvkY 231
                 ++ +D  + v +++++ r+  + + k     ++  ++v+++ ++ + +vkY
  KIR65979.1 203 ISLADSVELVEHAFQHARAGDVFVRKA--AACTIGDLVAALCQVFEVPVKY 251
                 688888888888888887754444443..3577777777777777777777 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.1   3.7e-10   3.9e-07       3      76 ..      10      78 ..       9     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 3.7e-10
                EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHH CS
          KR  3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeik 76
                +litGG+G++G+++ar l+++g  ++ ++sR++a+    ++ +++    + +v ++  Dv d d+ve++ + ++
  KIR65979.1 10 VLITGGTGSFGRAMARCLLDRGVGEVRVFSRDEAK----QDVMRRTL-ADGRVGYYIGDVRDYDSVERATRGVD 78
                69******************************433....32333332.35699**************9988765 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00034      0.36       1      41 [.      12      51 ..      12      60 .. 0.91
   2 !   12.3   0.0   6.8e-05     0.071      80     139 ..      69     131 ..      65     139 .. 0.78
   3 !    5.2   0.1    0.0095        10     177     238 ..     138     194 ..     133     210 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00034
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHH CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRl 41
                   +TG+TG  G+ + + LL++    ++ +  R + ++++++R 
     KIR65979.1 12 ITGGTGSFGRAMARCLLDRGVG-EVRVFSRDEAKQDVMRRT 51
                   8****************99754.*************99996 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 6.8e-05
                    HHHHHHHH--EEEE--SS-S.ST...TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGG CS
  NAD_binding_4  80 dlqelaeevdviihsaAtvnfde...pykellrvNveGtrevlelakklkklkvllhvST.ayv 139
                    ++++ ++ vd ++h aA  ++ +      e++r+Nv+G  +v+e a +     +++  ST  +v
     KIR65979.1  69 SVERATRGVDFVFHAAALKQVPScefFPLEAIRTNVLGSANVIEAADRNGVG-SVVVLSTdKAV 131
                    56778899*******99877665333234799**************987777.99999997544 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0095
                    HHHHHHHHHHHHHHHHHH---EEEEEE-EEE--SSST---TTS.HHHHHHHHHHHH-EEES-S CS
  NAD_binding_4 177 eqsKalaEklvrearrrsglpvvivRpsiitgesktGwingsd.lgirgllgliakgvlpeil 238
                      sKa+ Ek+ ++++   ++p    R ++++++   G +  s+  +i +++  i+ gv+p+++
     KIR65979.1 138 GLSKAMMEKVAQAHA--RNRP----RSGTVVSSVRYGNVMYSRgSVIPLFIEQIKAGVVPTVT 194
                    579***********9..5899....99999999999955544413566677777777777544 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.3   4.6e-08   4.8e-05       2     146 ..       9     137 ..       8     171 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.6e-08
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                  vl+tG+++ +Gra+a+ l+ +G+  v  ++r e+k   v+    +   ++ ++ +Dv+d+++ve++ + +       d + + A+++++ + + +  e
  KIR65979.1   9 RVLITGGTGSFGRAMARCLLDRGVGEVRvFSRDEAKQ-DVMRRTLA-DGRVGYYIGDVRDYDSVERATRGV-------DFVFHAAALKQVPSCEFFPLE 98 
                 59*********************96555166666666.55555554.379**************9998765.......788888887555555555444 PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTB CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagv 146
                      i +N+ g  ++++a+ ++      G++v  s   +  p + +
  KIR65979.1  99 ----AIRTNVLGSANVIEAADRN----GVGSVVVLSTDKAVHPINAM 137
                 ....3567777766666664443....66777777766666655554 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.8   3.8e-08     4e-05       4     179 ..      17     175 ..      14     189 .. 0.84
   2 ?   -3.5   0.1       5.9   6.2e+03      58      81 ..     210     233 ..     205     242 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 3.8e-08
                   TSHHHHHHHHHHHTT-.EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGa.evvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdral 99 
                    + Gra+A+ l ++G  ev +  ++e++++ +++  +++   ++  DV+d ++ve++ +       ++D+++++a+  +    +++ ++     +a+
    KIR65979.1  17 GSFGRAMARCLLDRGVgEVRVFSRDEAKQDVMRRTLADGRVGYYIGDVRDYDSVERATR-------GVDFVFHAAALKQV--PSCEFFPL----EAI 100
                   589************8468899999999999999999988889**********999865.......69********9998..44444444....578 PP

                   HHHTHHHHHHHHHHHHHCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGG CS
  adh_short_C2 100 dvnlyslfllakaalplmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaa 179
                    +n+ + +++++aa +   +g gs+v ls     ++v   na+g +Ka +e+++++ A++  + g  v +v  g +     
    KIR65979.1 101 RTNVLGSANVIEAADR---NGvGSVVVLSTD---KAVHPINAMGLSKAMMEKVAQAHARNRPRSGTVVSSVRYGNVMYSRG 175
                   99*********99975...556*******99...669999********************999999999998887765555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.9
                   HHHHHHHHHHSSEEEEEE-----E CS
  adh_short_C2  58 alveevvekfgklDilvnnagiap 81 
                   +lve++ ++    D++v  a+ ++
    KIR65979.1 210 ELVEHAFQHARAGDVFVRKAAACT 233
                   577777777778888888777654 PP

>> GPP34  Golgi phosphoprotein 3 (GPP34)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.4e-05     0.047     112     182 ..     124     232 ..     102     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.4e-05
       GPP34 112 flglfdmtthpvadtaakeavrrrvraaltsgepadp......................................rtaaLvallaaagllenllpdlea 172
                 +l ++d++ hp + +  ++a++++v++a ++++p +                                        t  L++l+ +++l+e+++++  a
  KIR65979.1 124 VL-STDKAVHPINAMGLSKAMMEKVAQAHARNRPRSGtvvssvrygnvmysrgsviplfieqikagvvptvtdpgMTRFLISLADSVELVEHAFQHARA 221
                 44.7899999******************98888875567788999999999999999****************9*889*****************9877 PP

       GPP34 173 reaa.arakel 182
                  ++  ++a++ 
  KIR65979.1 222 GDVFvRKAAAC 232
                 77776666665 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.8e-05     0.051       6      42 ..      15      52 ..      10      92 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.8e-05
                    --SHHHHHHHHHHHTTT.--EEEE-S-HHHHHHHHHHS CS
  NAD_Gly3P_dh_N  6 GaGswGtalAkvlaeng.hevrlwvreeelieeineeh 42
                    G+Gs+G a+A+ l ++g  evr+++r+e+  ++++++ 
      KIR65979.1 15 GTGSFGRAMARCLLDRGvGEVRVFSRDEAKQDVMRRTL 52
                    89***********999978*********9999988765 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.3e-05     0.077       6      74 ..      15      89 ..       9      92 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.3e-05
                   TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC..........-EEECECHHHHHHH-SEEEE-S-HHHH CS
  F420_oxidored  6 GaGnmgealasgllaagaqpheivvansrnpekaeelaeelg..........vkvtavdneeaaeeadvvvlavkpedv 74
                   G+G++g+a+a+ ll +g    e++v  sr++ k + ++++l           v+    + e a +  d+v+ a   ++v
     KIR65979.1 15 GTGSFGRAMARCLLDRG--VGEVRVF-SRDEAKQDVMRRTLAdgrvgyyigdVRDYD-SVERATRGVDFVFHAAALKQV 89
                   9****************..9****77.********9999998888888885533333.466677788888887766666 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00073      0.77       6      60 ..      15      81 ..      12      91 .. 0.81
   2 ?    1.0   0.1       0.4   4.2e+02      11      78 ..     120     187 ..     118     230 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00073
                   --SHHHHHHHHHHHHTT-.EEEEE-SSHHHHHHHHHTT...........EEE-SSHHHHHHHCSEEE CS
  NAD_binding_2  6 GlGvMGsnmalnllkagy.kvavynrtkekveelvaeg...........akaaesieelvasldvvi 60
                   G+G  G+ ma+ ll++g  +v v+ r+++k + +  +            ++ ++s+e +++++d+v+
     KIR65979.1 15 GTGSFGRAMARCLLDRGVgEVRVFSRDEAKQDVMRRTLadgrvgyyigdVRDYDSVERATRGVDFVF 81
                   99************999758******98776655444345588888888888889999888888887 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.4
                    HHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCC CS
  NAD_binding_2  11 Gsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieglle 78 
                    Gs  +l   ka + + ++ ++k+ +e++++++a+       +v+s++   +m + g+ +  +ie++++
     KIR65979.1 120 GSVVVLSTDKAVHPINAMGLSKAMMEKVAQAHARNRPRSGTVVSSVRYGNVMYSRGSVIPLFIEQIKA 187
                    56666677788889999999999999999999999999999999988877777777777777666544 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00015      0.15      13      84 ..       8      85 ..       2      91 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
                  -EEEEE.S-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-.....EEEEGCGHHHHHHT-SEEEE-SS CS
  Shikimate_DH 13 kkvlli.GaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeei.....ealkleelkellaeadvvisata 84
                  ++vl+  G+G  ++ +a+ Ll++gv +v v+ R+ ++ + +++ l + ++      ++++++++++ + +d v+ a a
    KIR65979.1  8 RRVLITgGTGSFGRAMARCLLDRGVGEVRVFSRDEAKQDVMRRTLADGRVgyyigDVRDYDSVERATRGVDFVFHAAA 85
                  677777369****************************99998888555441111234567777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2374.42
//
Query:       KIR65980.1  [L=253]
Description: hypothetical protein TK50_11995 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-12   46.2   0.0    8.3e-12   45.4   0.0    1.5  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.4e-06   27.4   0.0    6.9e-06   25.9   0.0    1.7  2  FR47             FR47-like protein
    9.2e-06   25.6   0.0    1.7e-05   24.8   0.0    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    5.3e-05   23.6   0.0    0.00012   22.4   0.0    1.6  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00061   20.0   0.3    0.00061   20.0   0.3    1.7  2  Acetyltransf_6   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.018   15.1   0.0      0.058   13.5   0.0    1.7  2  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   2.8e-15   8.3e-12      38     117 .]      70     145 ..      34     145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 2.8e-15
                     EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  38 aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     +  dg+l++ +  + +p+      +++++aV+p+ rg GlG +Ll + +  are g+++  l+v+ dn +a+rlY   GF
      KIR65980.1  70 VHVDGRLVAVADWRLVPP----ALHLNGIAVDPATRGVGLGGTLLADGLALARELGCDRALLDVSRDNPGARRLYLHAGF 145
                     556799999998888888....8**********************************99889*************88998 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   2.3e-09   6.9e-06       6      85 ..      73     153 ..      69     154 .. 0.88
   2 ?   -2.2   0.0       1.4   4.3e+03      10      27 ..     196     213 ..     192     235 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 2.3e-09
                 ETTT--EEEEEEE-TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-.S-EEEEEETT-HHHHHHHHHHT-EEEEEEEE CS
        FR47   6 rkelgelaawilrkdggelgalqvlpehrrrGlgsrlvkalakeiaerg.ktvllvvvasNtpsirlyeklGfekieetew 85 
                 +++l+++a+w+l ++   l ++ v+p  r+ Glg+ l +   +  +e g + +ll v  +N  ++rly   Gf    +t w
  KIR65980.1  73 DGRLVAVADWRLVPPALHLNGIAVDPATRGVGLGGTLLADGLALARELGcDRALLDVSRDNPGARRLYLHAGFADVSHTTW 153
                 57899*****************************99988877777886625677889999999*************99999 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
                 --EEEEEEE-TTSSEEEE CS
        FR47  10 gelaawilrkdggelgal 27 
                  ++++ +lr + g lg++
  KIR65980.1 196 LRVVGTVLRAPAGPLGGI 213
                 566777777777777766 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   5.6e-09   1.7e-05      35     110 ..      69     149 ..      63     155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 5.6e-09
  Acetyltransf_10  35 vaeeggkivGvi..el.rdgshisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkavg 110
                      ++ ++g++v v+  +l     h+  ++Vdp+ rg G+g  Ll + ++ a++ g     l v  ++  a+++Y + GF +v+
       KIR65980.1  69 GVHVDGRLVAVAdwRLvPPALHLNGIAVDPATRGVGLGGTLLADGLALARELGCDRaLLDVSRDNpGARRLYLHAGFADVS 149
                      677888999999555544555*********************************999******999***********9986 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   4.2e-08   0.00012      20      74 ..      84     145 ..      61     147 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 4.2e-08
                     EEEES..TCTEEEEE-GGGTTSSHHHHHHH...HTT...SEEEEEEEEE....THHHHHHHHHHTTE CS
  Acetyltransf_7  20 lslld..aeitrlaVdpeyrgkGiGraLle...aae...kgiileqlel....naekaikfYeklGF 74 
                     l+      +++++aVdp+ rg G+G  Ll+   a      g+      l    +++ a+++Y + GF
      KIR65980.1  84 LV--PpaLHLNGIAVDPATRGVGLGGTLLAdglA-LareLGCDRA--LLdvsrDNPGARRLYLHAGF 145
                     33..24467777*****************85642.1335777522..2233434459********** PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.3     2e-07   0.00061      17     130 ..       8     124 ..       4     134 .. 0.80
   2 ?   -2.4   0.1       1.6   4.7e+03      79     101 ..     211     233 ..     192     244 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2e-07
  Acetyltransf_6  17 lgevrfrvatdpedleallelfraqwarr...pdvfadpltraflrdllaalaargalrlyvlrldgrpvAvalglrsgdrlyywlggydpelak 108
                     +g+v   va +++dl+a+ +l++++       +  ++   +rafl+++l  +     + l  +++dgr+vAva +      l++  +++dp+ ++
      KIR65980.1   8 AGPVVGLVAPTDADLDAAARLLASSVPVGcngTVAYHANGFRAFLAAALTPPPGLRTVLLRGVHVDGRLVAVADWRLVPPALHLNGIAVDPATRG 102
                     55555556778999999999988875555554244445788888888888884444566778889****************************** PP

  Acetyltransf_6 109 lspgllllweliedaaeeGlrr 130
                     +++g  ll++ ++ a+e G++r
      KIR65980.1 103 VGLGGTLLADGLALARELGCDR 124
                     *******************875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.6
  Acetyltransf_6  79 dgrpvAvalglrsgdrlyywlgg 101
                     +g ++++++gl    r+y+   g
      KIR65980.1 211 GGILAGGLAGLLGTSRAYAIEEG 233
                     67777788888877777776555 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     2e-05     0.058       5      56 ..      71     120 ..      68     123 .. 0.88
   2 ?   -2.2   0.0       1.6   4.6e+03      27      41 ..     151     165 ..     143     166 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2e-05
  Acetyltransf_CG   5 tldegeevafleYevrkegvldfthTeVpeelrGkGiAkkLvkaalddaree 56 
                      ++d g  va+++++  +   l+++ + V+++ rG G+++ L    l  are 
       KIR65980.1  71 HVD-GRLVAVADWRLVPP-ALHLNGIAVDPATRGVGLGGTLLADGLALAREL 120
                      566.8899*****96665.9************************99999985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.6
  Acetyltransf_CG  27 fthTeVpeelrGkGi 41 
                       t TeV ++ +G G+
       KIR65980.1 151 TTWTEVTPAPGGGGV 165
                      566999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2077.98
//
Query:       KIR65981.1  [L=381]
Description: Zn-dependent hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-53  179.0   2.1      1e-52  178.6   2.1    1.2  1  Lactamase_B_2  Beta-lactamase superfamily domain
    3.6e-20   72.5   0.0    4.6e-20   72.2   0.0    1.1  1  Lactamase_B_3  Beta-lactamase superfamily domain
  ------ inclusion threshold ------
       0.09   12.8   6.6       0.58   10.1   6.6    2.5  1  Lactamase_B    Metallo-beta-lactamase superfamily
       0.17   11.3   0.0       0.47    9.9   0.0    1.7  2  Lactamase_B_6  Metallo-beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.6   2.1   2.3e-56     1e-52       1     201 []     132     328 ..     132     328 .. 0.95

  Alignments for each domain:
  == domain 1  score: 178.6 bits;  conditional E-value: 2.3e-56
                    SEEEES--TT.......HHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCC.C--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEE CS
  Lactamase_B_2   1 rriLiDagpd.......lrqqalralqPvelrdelppidaVllthaHyDHlaglltlre.lrpkklplyapkgvlavleanfvylaleeepavnvh 88 
                    rr+L+D++++       l+++ +r+++P   ++elp++da+ ++h+HyDHl ++ t+r+ ++++++p+++p+gv+a+le+++v++        +++
     KIR65981.1 132 RRVLVDPVWSdrcspsaLVGP-RRLHEPPVGLHELPAVDAIMISHDHYDHL-DMATVRAlTAGQSAPFVVPLGVGAHLERWGVPED-------RIV 218
                    8***************99999.9999665579*******************.*******766666****************98544.......666 PP

                    EE-TTSEEEECSTTEEEEEEEE-EE--CTCCE-TTTSEEEEEECTTEEEEEESS-S---..HHHHHHHCT-SEEEEE-S-SSTTHHHHHHT---ST CS
  Lactamase_B_2  89 eldwgesfelgdggleitatparhksgrrldrnagdtlGlriegggkrvyyigDtgyip..eeigerlggadllllditayeddemirhmgHltpe 182
                    eldw es+++g  gl+itat+a+h+sgr+l+r+ +++ +++++g+++rv+y+gD+gy++  +eig+++g++d++l++i+ay+  +     +H+ pe
     KIR65981.1 219 ELDWAESHRVG--GLTITATAAQHFSGRGLRRDGTLWSSWVVAGAHRRVFYTGDSGYFDgyAEIGTEHGPFDVTLMQIGAYDRAW---PSIHMFPE 309
                    7*********9..89********************************************999***********************...67****** PP

                    SHHHHCTTSSSSEEEEESB CS
  Lactamase_B_2 183 eaveaaadlgakrlvliHi 201
                    eav+a+ dl+ + l+++H+
     KIR65981.1 310 EAVAAHLDLRGGLLLPVHW 328
                    ******************9 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.0     1e-23   4.6e-20       2     163 .]     117     327 ..     116     327 .. 0.85

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 1e-23
  Lactamase_B_3   2 ltwlghnsflletagarilvDPf.............kanlgyeppa...........eeaDlvlisqaledHahletlkql............... 58 
                    + w+gh+s l+e++g r+lvDP+             +        +           + +D+++is+++ dH +++t+++l               
     KIR65981.1 117 VVWYGHASALIEIEGRRVLVDPVwsdrcspsalvgpR--------RlheppvglhelPAVDAIMISHDHYDHLDMATVRALtagqsapfvvplgvg 204
                    56********************977766544433320........266666788889**************************9887777777777 PP

  Lactamase_B_3  59 .........aenvkvleegeslevggleiravatshdavggserge..nngflleqdgltiyhlGhlahelsseel.kelgrvDvvltPvgg.... 138
                             ++++  l+  es +vggl i+a+a++h ++ g +r++   + +++  ++ ++++ G+ ++    +e+  e+g+ Dv l+ +g     
     KIR65981.1 205 ahlerwgvpEDRIVELDWAESHRVGGLTITATAAQHFSGRGLRRDGtlWSSWVVAGAHRRVFYTGDSGYFDGYAEIgTEHGPFDVTLMQIGAydra 300
                    7777777665555556668999***************99999998746677888889************9888887699***************** PP

  Lactamase_B_3 139 ..pltlgqeealelakrLkpklvlPmh 163
                      ++ + +eea+ +   L+  l lP+h
     KIR65981.1 301 wpSIHMFPEEAVAAHLDLRGGLLLPVH 327
                    *9999**********9**999999998 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   6.6   0.00013      0.58       6      58 ..     122     181 ..     117     359 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00013
                  SEEEEEEETTCEEEES--SCHHHHHHHH.......HHHHHTSGGGGEEEEE-SBSSHHHH CS
  Lactamase_B   6 vnsyliegdggviLiDtGtsteaaraal.......elaalglkpkdvdavilTHlHlDHi 58 
                  + s lie +g+ +L+D+ +s + +  al       e+     ++  vda+ ++H H+DH 
   KIR65981.1 122 HASALIEIEGRRVLVDPVWSDRCSPSALvgprrlhEPPVGLHELPAVDAIMISHDHYDHL 181
                  56889************************88877655555556678*************5 PP

>> Lactamase_B_6  Metallo-beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0001      0.47       1      50 [.     126     182 ..     126     198 .. 0.75
   2 ?   -2.0   0.0      0.46   2.1e+03     127     143 ..     227     243 ..     215     254 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0001
  Lactamase_B_6   1 lLeldnvkiLlDvGwdeskvslesalkelek........viptvdliLLshatlehlG 50 
                    l+e+++ ++L+D+ w++  +s +  + + +          +p vd+i++sh   +hl 
     KIR65981.1 126 LIEIEGRRVLVDPVWSDR-CSPSALVGPRRLheppvglhELPAVDAIMISHDHYDHLD 182
                    799*************96.6655555443332244444336***********999985 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.46
  Lactamase_B_6 127 kldgltitaynaGhtlG 143
                    ++ gltita +a h  G
     KIR65981.1 227 RVGGLTITATAAQHFSG 243
                    456999*9999988777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2859.23
//
Query:       KIR65982.1  [L=394]
Description: molecular chaperone GroES [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-27   94.7   0.1    4.9e-27   94.0   0.1    1.3  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    4.2e-15   55.4   0.4    9.3e-15   54.2   0.4    1.6  1  ADH_N_assoc   Alcohol dehydrogenase GroES-associated
    1.2e-13   51.2   1.7      7e-10   39.0   0.1    2.5  3  ADH_zinc_N    Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.057   12.8   0.0      0.092   12.1   0.0    1.2  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.1   1.1e-30   4.9e-27       2     105 ..      26     142 ..      25     146 .. 0.91

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 1.1e-30
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-.........TTBEETTTS. CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlC.........eeakllgvs. 90 
                 +++++++++++iCgsDlh+++    +  k++ +lGHE +G+veevg +v++lk GdrVvv+++i+cg C  C ++ +  C         + a+l+g++ 
  KIR65982.1  26 TDAIVRITSTAICGSDLHLYEV-LGPYLKPGDVLGHEPMGIVEEVGTGVTRLKPGDRVVVPFNIACGACWMCDRQLYAQCettqvtaegKGAALFGYTs 123
                 6899*****************9.899******************************************************8888888776666666669 PP

                 ....S-SSSBSEEEECGGG CS
       ADH_N  91 ....ldGgfaeyvvvpekk 105
                     ++Gg+aey+ vp+++
  KIR65982.1 124 lygsVPGGQAEYLRVPHAQ 142
                 99999***********876 PP

>> ADH_N_assoc  Alcohol dehydrogenase GroES-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.4   2.1e-18   9.3e-15       1      23 []       1      23 [.       1      23 [. 0.99

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 2.1e-18
  ADH_N_assoc  1 MKAVTyqGpkdVrVeeVPDPkIe 23
                 MKA+T+qG++dVrVe+VPDP+Ie
   KIR65982.1  1 MKALTWQGRRDVRVEDVPDPRIE 23
                 **********************8 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       2.6   1.2e+04      81      90 ..     178     187 ..     176     188 .. 0.86
   2 !   39.0   0.1   1.6e-13     7e-10       1      75 [.     189     264 ..     189     275 .. 0.89
   3 !   11.7   0.0   4.2e-05      0.19      53     107 ..     274     331 ..     261     351 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.6
                 EEEEEEECSC CS
  ADH_zinc_N  81 pgGrlvvvGg 90 
                 pgG+l+v+G+
  KIR65982.1 178 PGGTLAVFGL 187
                 89******96 PP

  == domain 2  score: 39.0 bits;  conditional E-value: 1.6e-13
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHH CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvGsgatleaa 75 
                 +vG++   + ++lGa +vi+ d  +e+le+a++ G++ +++ ++  d+  ++ +l +g+g+d+v+++vG +a  +++
  KIR65982.1 189 PVGQFCARIGRHLGAgRVIGLDLVPERLEMARRHGVE-TLDVSRLdDVPGALIDLVDGRGPDAVIDAVGMEAHGSTS 264
                 79*********************************65.67777899***********************77765555 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 4.2e-05
                 HTTTSSEEEEEESSC..SHHHHHHHHHCEEEEEEEEECSC.TSSEEEEEHHHHHHTT- CS
  ADH_zinc_N  53 ltggegvdvvfecvG..sgatleaalkllkpgGrlvvvGg.gkgeeefdlrnlllkek 107
                 l  ++ +d+ ++ +G    ++l+aalk++++gG++ + G+ g++ ++++l+ ++ +  
  KIR65982.1 274 LLPDRLADAMIDRAGvdRLTVLKAALKAVRRGGTVSISGVyGGEVDPLPLMEMFDRGA 331
                 5556778888999993333579*****************8444444477777665544 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.1e-05     0.092      34      84 ..     177     228 ..     161     234 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.1e-05
                   GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHHHTCEECS CS
  2-Hacid_dh_C  34 lsgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeeelgvelvs 84 
                     g t++++GlG +Gq  a++ + +g+ +vi+ d  +++ e ++++gve  +
    KIR65982.1 177 PPGGTLAVFGLGPVGQFCARIGRHLGAgRVIGLDLVPERLEMARRHGVETLD 228
                   56889**********************9*******99988877777776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2671.81
//
Query:       KIR65983.1  [L=253]
Description: succinate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-25   88.2   0.4    2.1e-24   85.7   0.0    2.0  2  Fer2_3    2Fe-2S iron-sulfur cluster binding domain
      1e-10   41.9   1.5      1e-10   41.9   1.5    1.8  2  Fer4_8    4Fe-4S dicluster domain
    1.3e-09   38.5   4.0    1.3e-09   38.5   4.0    2.0  1  Fer4_7    4Fe-4S dicluster domain
    3.3e-09   37.1   8.5    5.5e-08   33.2   1.0    2.1  3  Fer4_17   4Fe-4S dicluster domain
    3.2e-07   30.3   6.2    3.2e-07   30.3   6.2    2.3  2  Fer4_10   4Fe-4S dicluster domain
    3.9e-07   30.1   7.3    5.3e-05   23.3   0.1    2.8  3  Fer4_9    4Fe-4S dicluster domain
    2.1e-06   27.9   0.6      0.074   13.3   0.1    2.3  2  Fer4_18   4Fe-4S dicluster domain
      6e-06   25.9   3.8      6e-06   25.9   3.8    3.0  3  Fer4      4Fe-4S binding domain
    6.5e-06   26.0   1.1    6.5e-06   26.0   1.1    2.9  2  Fer4_6    4Fe-4S binding domain
    4.3e-05   24.3   1.5      0.022   15.6   0.3    2.4  2  Fer4_22   4Fe-4S dicluster domain
    6.6e-05   23.1   1.0    6.6e-05   23.1   1.0    2.7  2  Fer4_4    4Fe-4S binding domain
     0.0001   22.1   3.0     0.0001   22.1   3.0    3.4  3  Fer4_2    4Fe-4S binding domain
    0.00074   20.3  22.2     0.0035   18.2   6.3    3.1  3  Fer4_3    4Fe-4S binding domain
    0.00078   19.3   4.0     0.0012   18.8   0.2    2.4  2  Fer2      2Fe-2S iron-sulfur cluster binding domain
     0.0024   18.0   8.4      0.048   13.8   8.4    2.5  1  Fer4_21   4Fe-4S dicluster domain
     0.0064   17.4  10.1      0.014   16.3   0.4    2.6  2  Fer4_16   4Fe-4S double cluster binding domain
     0.0094   16.7   3.6        0.1   13.3   0.9    2.6  2  Fer4_15   4Fe-4S single cluster domain
  ------ inclusion threshold ------
       0.69   10.5  12.3       0.63   10.6   4.9    2.5  2  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I


Domain annotation for each model (and alignments):
>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.0   2.1e-27   2.1e-24       1     107 [.       4     120 ..       4     122 .. 0.95
   2 ?    0.4   0.3      0.65   6.5e+02      56      79 ..     161     185 ..     146     195 .. 0.73

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 2.1e-27
      Fer2_3   1 tlkvkRfdprrdrgkqkvqeyeveae.eedtvldaLlkikeev....dptlafrasCregiCGscavainGkp......tlaCtatikdlakqkseiel 88 
                 tl+++R++   +++k ++ +y+v+   +++++l++L+ ++e++    ++++af+++CregiCG+c+++inG        t+aC+ +++++ + + +i +
  KIR65983.1   4 TLRIWRQSG--PTDKGRMVTYQVDDVsPDMSFLEMLDVLNERLilsgEEPVAFDHDCREGICGMCGLMINGDAhgpqrgTTACQLHMRQFSDGD-TIDI 99 
                 699******..8899********9887****************9****************************9999999************987.7*** PP

      Fer2_3  89 epl..pkfpvirDLvvDidem 107
                 ep+  ++fpvi+DLvv+++++
  KIR65983.1 100 EPWraRAFPVIKDLVVNRSAF 120
                 ***8889**********9987 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.65
      Fer2_3  56 iCGscavai.nGkptlaCtatikdl 79 
                  CG+c +a+ nG  +l   a++++l
  KIR65983.1 161 GCGACVAACpNGSGMLFTAAKVTQL 185
                 39***66654999999888888765 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.5       8.2   8.2e+03       8      11 ..      63      66 ..      58      90 .. 0.69
   2 !   41.9   1.5     1e-13     1e-10       3      65 .]     157     228 ..     155     228 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 8.2
      Fer4_8  8 CgaC 11
                Cg+C
  KIR65983.1 63 CGMC 66
                3333 PP

  == domain 2  score: 41.9 bits;  conditional E-value: 1e-13
      Fer4_8   3 ekCieCgaCqsaCp.......vlrrtkkhlldargeaae..dvqeeqvlee..eealwsCttcgaCtevCpvgi 65 
                  +Ci+CgaC +aCp       ++ +  + +l ++g+ +   +v+      +  e +++ Ct++g+Ct vCp+gi
  KIR65983.1 157 AACIGCGACVAACPngsgmlfTAAKVTQLSLLPQGQPERytRVVGMVD--AhdEAGFGGCTNTGECTAVCPKGI 228
                 58************8888865333333666677777666442223333..244889****************97 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   4.0   1.3e-12   1.3e-09       1      52 []     158     228 ..     158     228 .. 0.62

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.3e-12
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenek...........gtekv...........eidpekClgCgaCvavCPtga 52 
                 +CigCgaCvaaCp++  +l  +++             +   +           e     C+++g+C avCP+g+
  KIR65983.1 158 ACIGCGACVAACPNGSGMLFTAAKVTqlsllpqgqpeR---YtrvvgmvdahdEAGFGGCTNTGECTAVCPKGI 228
                 5************8887776543333344444433331...122234333233344456************996 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.3         7     7e+03       5       8 ..      63      66 ..      57      94 .. 0.68
   2 !   15.3   1.2   2.3e-05     0.023      44      59 ..     157     172 ..     145     175 .. 0.79
   3 !   33.2   1.0   5.6e-11   5.5e-08       1      60 [.     158     228 ..     158     229 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 7
     Fer4_17  5 CgyC 8 
                Cg+C
  KIR65983.1 63 CGMC 66
                4444 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.3e-05
     Fer4_17  44 slCieCgeCerkCPqg 59 
                   Ci+Cg C+++CP+g
  KIR65983.1 157 AACIGCGACVAACPNG 172
                 6799999999999986 PP

  == domain 3  score: 33.2 bits;  conditional E-value: 5.6e-11
     Fer4_17   1 rCiqCgyClpeCpsyeaydnepkkllraakl............glleeaekeekaslCieCgeCerkCPqgl 60 
                 +Ci+Cg+C+++Cp +  + +  +k+ +   l            g++++ ++e  ++ C++ geC+++CP+g+
  KIR65983.1 158 ACIGCGACVAACPNGSGMLFTAAKVTQLSLLpqgqperytrvvGMVDA-HDEAGFGGCTNTGECTAVCPKGI 228
                 6************97776664443333322233222333322444444.6779*****************98 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.3       5.8   5.7e+03      47      51 ..      60      66 ..      48      68 .. 0.64
   2 !   30.3   6.2   3.2e-10   3.2e-07       6      56 .]     156     225 ..     151     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.8
     Fer4_10 47 g..cgaC 51
                +  cg+C
  KIR65983.1 60 EgiCGMC 66
                4445555 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 3.2e-10
     Fer4_10   6 ddtCirCgkCvkaCPadl...................tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 +  Ci+Cg+Cv+aCP                       +  ++   + +++++ + + Ct+ g+C+++CP
  KIR65983.1 156 SAACIGCGACVAACPNGSgmlftaakvtqlsllpqgqPERYTRVVGMVDAHDEAGFGGCTNTGECTAVCP 225
                 678*************88****************88644455667788999999***************9 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   1.3         7     7e+03      39      42 ..      63      66 ..      43      88 .. 0.70
   2 !   23.3   0.1   5.3e-08   5.3e-05      33      49 ..     151     172 ..     109     174 .. 0.79
   3 !   10.7   0.0   0.00046      0.46      33      49 ..     208     227 ..     179     228 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 7
      Fer4_9 39 CgaC 42
                Cg C
  KIR65983.1 63 CGMC 66
                3333 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 5.3e-08
      Fer4_9  33 e.....eaCigCgaCveaCpkg 49 
                 +      aCigCgaCv+aCp+g
  KIR65983.1 151 DaafssAACIGCGACVAACPNG 172
                 03344479************87 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00046
      Fer4_9  33 e...eaCigCgaCveaCpkg 49 
                 e     C+  g+C+++Cpkg
  KIR65983.1 208 EagfGGCTNTGECTAVCPKG 227
                 144567999999*****998 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   7.4e-05     0.074      48      74 ..     146     172 ..     129     176 .. 0.81
   2 !   12.7   0.0   0.00011      0.11      46      76 ..     199     229 ..     190     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.4e-05
     Fer4_18  48 kekeerkekgagdcidcescvkvcPtg 74 
                 ++ +  ++ +++ ci c++cv+ cP g
  KIR65983.1 146 AKADADAAFSSAACIGCGACVAACPNG 172
                 5666777788999************86 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00011
     Fer4_18  46 alkekeerkekgagdcidcescvkvcPtgid 76 
                 ++  ++ + e+g g c++ + c +vcP gi 
  KIR65983.1 199 VVGMVDAHDEAGFGGCTNTGECTAVCPKGIP 229
                 55567889999*****************996 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   1.3       3.3   3.3e+03      11      14 ..      63      66 ..      60      68 .. 0.63
   2 !   25.9   3.8     6e-09     6e-06       6      21 ..     157     172 ..     153     173 .. 0.89
   3 ?    4.7   2.4     0.029        29      12      21 ..     218     227 ..     213     229 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.3
                -THH CS
        Fer4 11 CGaC 14
                CG C
  KIR65983.1 63 CGMC 66
                5555 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 6e-09
                 TTSSS-THHHHHSTTT CS
        Fer4   6 ekCigCGaCvevCPvg 21 
                   CigCGaCv +CP+g
  KIR65983.1 157 AACIGCGACVAACPNG 172
                 57************98 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.029
                 THHHHHSTTT CS
        Fer4  12 GaCvevCPvg 21 
                 G+C  vCP g
  KIR65983.1 218 GECTAVCPKG 227
                 99******98 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   1.1   6.5e-09   6.5e-06       3      21 ..     153     171 ..     152     177 .. 0.86
   2 !    7.1   1.6    0.0062       6.2      10      23 ..     215     228 ..     213     229 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 6.5e-09
      Fer4_6   3 eidpdkCigCgdCvrvCPe 21 
                 ++   +CigCg+Cv++CP 
  KIR65983.1 153 AFSSAACIGCGACVAACPN 171
                 68889*************5 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0062
      Fer4_6  10 igCgdCvrvCPega 23 
                 +  g+C++vCP g+
  KIR65983.1 215 TNTGECTAVCPKGI 228
                 55589******875 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   2.2e-05     0.022      73      94 ..     150     171 ..     137     173 .. 0.85
   2 !    7.3   0.0    0.0085       8.5      72      96 .]     204     228 ..     183     231 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.2e-05
     Fer4_22  73 fkekfgesgCvGCgRCieacpv 94 
                   + f++ +C+GCg C++acp+
  KIR65983.1 150 ADAAFSSAACIGCGACVAACPN 171
                 55678999************97 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0085
     Fer4_22  72 efkekfgesgCvGCgRCieacpvki 96 
                 + +++ g  gC+  g C+++cp++i
  KIR65983.1 204 DAHDEAGFGGCTNTGECTAVCPKGI 228
                 5566677778888888888888765 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   1.0   6.6e-08   6.6e-05       3      16 ..     158     171 ..     156     183 .. 0.90
   2 !   10.3   0.3   0.00086      0.85       4      16 ..     214     226 ..     208     231 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 6.6e-08
      Fer4_4   3 rCigCgsCvaaCPq 16 
                  CigCg+CvaaCP 
  KIR65983.1 158 ACIGCGACVAACPN 171
                 7************5 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00086
      Fer4_4   4 CigCgsCvaaCPq 16 
                 C++ g C+a+CP 
  KIR65983.1 214 CTNTGECTAVCPK 226
                 999*********6 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.7      0.48   4.8e+02       2      16 ..      51      66 ..      50      68 .. 0.76
   2 !   22.1   3.0     1e-07    0.0001       4      22 .]     153     171 ..     146     171 .. 0.87
   3 ?    5.4   0.9     0.022        22      10      21 ..     214     225 ..     207     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.48
      Fer4_2  2 pvvvdtdrCig..CgaC 16
                pv++d d C +  Cg C
  KIR65983.1 51 PVAFDHD-CREgiCGMC 66
                6788888.887688888 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 1e-07
      Fer4_2   4 vvdtdrCigCgaCvsaCPa 22 
                 ++ +++CigCgaCv aCP+
  KIR65983.1 153 AFSSAACIGCGACVAACPN 171
                 566789************5 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.022
      Fer4_2  10 CigCgaCvsaCP 21 
                 C++ g C+ +CP
  KIR65983.1 214 CTNTGECTAVCP 225
                 555589*****9 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.7       5.9   5.9e+03       1       5 [.      63      67 ..      63      85 .. 0.62
   2 !   18.2   6.3   3.5e-06    0.0035       1      14 [.     159     172 ..     159     173 .. 0.95
   3 !   12.7   1.4    0.0002       0.2       1      15 []     214     228 ..     214     228 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 5.9
      Fer4_3  1 CtgCg 5 
                C +Cg
  KIR65983.1 63 CGMCG 67
                66787 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 3.5e-06
      Fer4_3   1 CtgCgaCvevCPvg 14 
                 C+gCgaCv +CP+g
  KIR65983.1 159 CIGCGACVAACPNG 172
                 ************98 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 0.0002
      Fer4_3   1 CtgCgaCvevCPvgA 15 
                 Ct+ g C  vCP+g+
  KIR65983.1 214 CTNTGECTAVCPKGI 228
                 999**********95 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   1.2e-06    0.0012      28      77 ..      51      88 ..      35      89 .. 0.75
   2 ?    1.2   0.4      0.37   3.7e+02      39      48 ..     161     170 ..     145     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.2e-06
                TTTSTTSSSSSSSSTTEEEEEESCECTTSSSSTHHHHHTTEEEEGGGSEE CS
        Fer2 28 gidipysCggggCgtClvevlegevqsdetelegeeldegklrlaCqtiv 77
                 +++ ++C++g Cg+C  +++            g+    +   +aCq  +
  KIR65983.1 51 PVAFDHDCREGICGMCGLMIN------------GDAHGPQRGTTACQLHM 88
                78999*************999............33333334569999876 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.37
                 SSSTTEEEEE CS
        Fer2  39 gCgtClvevl 48 
                 gCg+C++ + 
  KIR65983.1 161 GCGACVAACP 170
                 6****98765 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   8.4   4.9e-05     0.048       2      52 ..     153     225 ..     152     230 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.9e-05
     Fer4_21   2 ridedkCigCgkCliaCedtshqai............eidaktvl.......kvvede.....CvGCnlCssvCP 52 
                  + ++ CigCg C+ aC+++s                ++++++++       +  +de     C+    C++vCP
  KIR65983.1 153 AFSSAACIGCGACVAACPNGSGMLFtaakvtqlsllpQGQPERYTrvvgmvdA--HDEagfggCTNTGECTAVCP 225
                 567899************98876665555555555554555554444443221..22223333777778999998 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.4   1.4e-05     0.014       2      14 ..     159     171 ..     135     184 .. 0.74
   2 !    7.6   0.1    0.0071       7.1       2      15 ..     214     227 ..     204     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.4e-05
     Fer4_16   2 CgtCgkCaevCPt 14 
                 C++Cg+C+ +CP 
  KIR65983.1 159 CIGCGACVAACPN 171
                 5555555555554 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0071
     Fer4_16   2 CgtCgkCaevCPtn 15 
                 C++ g+C+ vCP +
  KIR65983.1 214 CTNTGECTAVCPKG 227
                 77778888888875 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.9    0.0001       0.1       6      20 ..     157     171 ..     153     178 .. 0.90
   2 ?    3.1   0.1      0.16   1.6e+02       8      25 ..     214     231 ..     212     242 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.0001
     Fer4_15   6 daCigcglCvaeape 20 
                  aCigcg+Cva++p+
  KIR65983.1 157 AACIGCGACVAACPN 171
                 58***********96 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.16
     Fer4_15   8 CigcglCvaeapevfeld 25 
                 C+  g C a++p+ + l+
  KIR65983.1 214 CTNTGECTAVCPKGIPLN 231
                 9***********988766 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   4.9   0.00064      0.63       5      18 ..     158     171 ..     156     172 .. 0.92
   2 ?    3.8   0.8     0.084        83       5      18 ..     213     226 ..     212     227 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00064
     Fer4_13   5 tCiacgaCvelaPd 18 
                  Ci+cgaCv+++P+
  KIR65983.1 158 ACIGCGACVAACPN 171
                 6************6 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.084
     Fer4_13   5 tCiacgaCvelaPd 18 
                  C++ g C +++P+
  KIR65983.1 213 GCTNTGECTAVCPK 226
                 6************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1696.11
//
Query:       KIR65984.1  [L=645]
Description: succinate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-57  194.8   1.1    2.5e-57  194.8   1.1    1.5  2  FAD_binding_2   FAD binding domain
    5.3e-38  129.9   0.0    9.6e-38  129.1   0.0    1.4  1  Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
    6.3e-05   22.3   1.2     0.0091   15.3   0.6    2.9  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    9.6e-05   22.1   2.9     0.0021   17.7   2.9    2.3  1  DAO             FAD dependent oxidoreductase
      0.002   18.3   0.7       0.01   16.1   0.1    2.5  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0033   16.6   1.6      0.007   15.5   0.5    1.9  2  GIDA            Glucose inhibited division protein A
  ------ inclusion threshold ------
      0.026   13.8   0.4      0.044   13.0   0.4    1.3  1  FAD_binding_3   FAD binding domain
      0.092   11.4   0.2       0.33    9.6   0.0    1.9  2  HI0933_like     HI0933-like protein
       0.16   11.9   0.0       0.32   10.9   0.0    1.4  1  YjeF_N          YjeF-related protein N-terminus


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.8   1.1   1.3e-60   2.5e-57       2     417 .]      44     449 ..      43     449 .. 0.93
   2 ?   -2.6   0.0       1.1   2.2e+03      72     105 ..     515     549 ..     499     594 .. 0.67

  Alignments for each domain:
  == domain 1  score: 194.8 bits;  conditional E-value: 1.3e-60
                    EEEE--SHHHHHHHHHHHHTTT-EE.EEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkva.vvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    viV+G+GlAG +AA+++ae+G +v     + ++++ ++ ++qGgi+a+ +  +    ++ds+   ++dt+k++d ++ +  v+ ++e +   +d+ 
     KIR65984.1  44 VIVVGTGLAGGSAAATLAEQGYRVRsYCYQDSPRRAHSIAAQGGINAAKNYRN----DGDSVHRLFYDTVKGGDFRSRESNVHRLAEVSVNIIDQC 135
                    9*********************99624566777799*************4444....569************************************ PP

                    HHTT----BCCTSSB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCT.....EEEEESEEEEEEEECTTEEEEEEEEETTTTCE CS
  FAD_binding_2  97 eelgvpfsrtedgpvdvrelGglsatartlhdaadarretlvtghallarlvesarkag.....vdfqerteadeLivedgrvtGavvenpesgre 187
                     ++gvpf r+ +g +d r +Gg + + rt + +++       tg++ll   ++++++ +     v++ +r+e++eLiv dgr++G+vv+++ +g++
     KIR65984.1 136 VAQGVPFAREYGGLLDTRSFGGAQVQ-RTFYARGQ-------TGQQLLLGAYQALER-QiglgnVEMNARHEMLELIVVDGRARGIVVRDLVTGEI 222
                    *********9999*************.****7777.......9**********9944.34799********************************* PP

                    EEEEESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTB..B--THHHHTT-EEE-.T CS
  FAD_binding_2 188 vrirakavvlatgGfgrallkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgi..LitealrgeGgilvd.k 280
                    +   a+avvla+gG+g+          ++  +tna+++  +++  a r ga  ++  +   q+hPt+++  +d++    L++e lr++G ++v  +
     KIR65984.1 223 TSEFADAVVLASGGYGN----------VFYLSTNAKGCNVTATWRAHRRGAYFAN--PCYTQIHPTCIPVSGDHQSKltLMSESLRNDGRVWVPkA 306
                    *****************..........*************************999..***********97777766689***************99 PP

                    TSSBTH....................GGGS-HHHHHHHHH.HHHHTTTS....CCBEEEE-TT....SSHHHHHHHSHHHHHHHHHCCT......S CS
  FAD_binding_2 281 dGrrFm....................nelasrdvvsrailekeiaeggs....eanvyldash...gldaegleatleaineeaangldkdfgrgi 349
                    +G +                      ++l +rd+ sra   +  + g++    +  vyld+++   +l+++++ea+  +  e  ++  +       
     KIR65984.1 307 KGDDRRpkdigederdyyleriypsfGNLVPRDIASRAAK-NVCDAGRGvgpgGLGVYLDFADaidRLGRKAIEAKYGNLFEMYERITG------E 395
                    9*88458*******************************99.555555555899889******99999*****************99777......8 PP

                    -TTTSEEE.......EEEEEEEES-EEEBETTSBESTTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 350 dpadrpipgpfyavkvvpaqhytmgGvetdengrvldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                    dp++ p+        ++pa+hytmgG+ +d++++       +ipGL+ +Ge+   + hganrlg++ l
     KIR65984.1 396 DPYEVPMR-------IYPAVHYTMGGLWVDYDLQS------TIPGLFVIGEAN-FSDHGANRLGASAL 449
                    9****888.......********************......************.999*******9765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.1
                    HTTT-S.-HHHHHHHHHTHHHHHHHHHHTT----B CS
  FAD_binding_2  72 aldela.dqplveafveaapeavdeLeelgvpfsr 105
                    +  +++   +++ea++++a ++++ L+e + +  r
     KIR65984.1 515 QIMWEHcGMERSEAGLRKAIDEIRALREEFWKRVR 549
                    45555557788888888888888888887433333 PP

>> Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   0.0   4.8e-41   9.6e-38       1     128 []     510     644 ..     510     644 .. 0.98

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 4.8e-41
                     .HHHHHHHHHHSSSSB-HHHHHHHHHHHHHHHHH.HTTB--S---SSS-HHHHHHHHHHHHHHHHHHHHHHHHH--S-BTTBEBTTS-S...... CS
  Succ_DH_flav_C   1 rkeLgkimqkkvgvfRteegLkealkelkelrer.lknvkvtdkskvaNqelvealelanllelAeaiaksAlaRkESrGaHaredfpe...... 88 
                     ++eLg+im++++g++R+e+gL++a++e+++lre+ +k+v+v+++++ +Nq+l++a ++a+++elAe+++++Al+R+ES+G+H+r ++++      
      KIR65984.1 510 HRELGQIMWEHCGMERSEAGLRKAIDEIRALREEfWKRVRVPGDGDGLNQSLEKAGRVADFFELAELMCVDALHREESCGGHFRAEHQTpdgeaq 604
                     89************************************************************************************998889999 PP

                     EETTT-SEEEEE...TT-SS-EEEEEE--GGG--S---SS CS
  Succ_DH_flav_C  89 rdDenwlkhtlasldaakeeveleyepveletlkpkeRsY 128
                     rdD+++++++++ ++  +e   l+ e++++e ++p++RsY
      KIR65984.1 605 RDDDRFAYVAAWEYTGGDEPAVLHKEDLKFEYVHPTQRSY 644
                     *************9999999999****************9 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.6   4.6e-06    0.0091       3      58 ..      44     142 ..      42     261 .. 0.57
   2 ?    3.7   0.0     0.015        29     256     278 ..     413     435 ..     407     452 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.6e-06
                  EEEE--SHHHHHHHHHHHHHTS-EEEE...E.TTHCHHHCSHHHHCHHHHHHHHHHHHH....................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx...x.xxxxxxxxxxxxxxxxxxxxxxxxxxx....................................... RF
  Pyr_redox_2   3 vvviGgGpAGlaaaltlaqagakvtlv...e.legtclnggcllskallgvaedaeias....................................... 57 
                  v+v+G G AG +aa tla++g++v  +   +  ++++        +a+ +++ d++ ++                                       
   KIR65984.1  44 VIVVGTGLAGGSAAATLAEQGYRVRSYcyqDsPRRAHSIAAQGGINAAKNYRNDGDSVHrlfydtvkggdfrsresnvhrlaevsvniidqcvaqgvp 141
                  9******************9999987744414333333333333345555555555444566666666544445555555555555555555555555 PP

                  H CS
                  x RF
  Pyr_redox_2  58 e 58 
                   
   KIR65984.1 142 F 142
                  0 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.015
                  TEEE--TTSBESSTTEEE-GGGC CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 256 ggivvdeflrtnvpgiyaiGDva 278
                  gg+ vd  l++++pg+++iG   
   KIR65984.1 413 GGLWVDYDLQSTIPGLFVIGEAN 435
                  8899****************976 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   2.9   1.1e-06    0.0021       2     303 ..      44     336 ..      43     368 .. 0.57

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.1e-06
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHH CS
         DAO   2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeelea 98 
                 v+++G G +G s+A  La++g  V  ++ +d + ++ S +++g + ++  y  ++  ++rl +++++  +  ++e         + +  la+ +   + 
  KIR65984.1  44 VIVVGTGLAGGSAAATLAEQGyrVRSYCYQDSPRRAHSIAAQGGINAAKNYRNDGDSVHRLFYDTVKGGDFRSRE---------SNVHRLAEVS--VNI 131
                 99*********************************************7765555645556666665555555555.........5555555322..333 PP

                 HHHHHHHH....HHTTT..TEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHT....T-EEEESECEEEEEEEETCEEEEE...E CS
         DAO  99 ldkllall....leagl..daelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaeal....Gveilegtevtgleeedgkvwgve...r 184
                 +d+ +a++    +e+g   d++ + +++v++            fy   gq   ++l+ + ++a+e++     ve+  ++e  +l   dg++ g+     
  KIR65984.1 132 IDQCVAQGvpfaREYGGllDTRSFGGAQVQR-----------TFYAR-GQ-TGQQLLLGAYQALERQiglgNVEMNARHEMLELIVVDGRARGIVvrdL 217
                 4444444333434444422333344433333...........34444.34.233444444444444444426888888888887777777777777653 PP

                 ECTEEE..EEEEEEEE--GGGHH...HHHTTCTTTSEEEE.....EEEEEEEEEECCTHSTGSGCSEEEEE...EEETTTTEEEEE..ETTSEEEE.EE CS
         DAO 185 ttpgen..daadavVnaaGawsd...llgllkeldlpisp.....vrgqvlvlkplseklvspaailpvpe...tdddgrgvyvtp..rkdgrvlv.Gg 267
                 +t ge+  + adavV+a G + +   l+ ++k   + +++     +rg +++  p         +i p+ +    d++++ + +    r dgrv+v  +
  KIR65984.1 218 VT-GEItsEFADAVVLASGGYGNvfyLSTNAK--GCNVTAtwrahRRGAYFAN-PCYT------QIHPTCIpvsGDHQSKLTLMSEslRNDGRVWVpKA 306
                 33.44434467**********88532222222..2333333444467777777.5544......33333333213333433333334448999999443 PP

                 SSEEETTCSS..TSCSHHHHHHHHHHHHHHSGGGCGEE CS
         DAO 268 tadeesgddd..pevdeedidellealrklfPqlgdvl 303
                      +gdd+   ++ e+++d++le++   f +l   +
  KIR65984.1 307 -----KGDDRrpKDIGEDERDYYLERIYPSFGNL---V 336
                 .....34444235677777777666665555443...3 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   5.1e-06      0.01       1      23 [.      46      68 ..      46      77 .. 0.93
   2 ?   -1.7   0.0       1.8   3.5e+03      25      59 ..     582     624 ..     577     628 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.1e-06
                   EE--SHHHHHHHHHHHCCTEEEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvl 23
                   +vG+Gl+G +aA++La++g++v 
     KIR65984.1 46 VVGTGLAGGSAAATLAEQGYRVR 68
                   8*******************985 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.8
                    E-SSSSSSGGG-EECE..TT......CEECTS---EEETTHHH CS
  NAD_binding_8  25 lekrdrlGGraasyev..pg......vrvdygahifhgsgyyp 59 
                    l + +++GG+ + ++   +g       r+ y a +  ++g+ p
     KIR65984.1 582 LHREESCGGHFRAEHQtpDGeaqrddDRFAYVAAWEYTGGDEP 624
                    5667889999888877652344445588888888876666555 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.5   3.5e-06     0.007       1      27 [.      43      69 ..      43      94 .. 0.86
   2 ?   -0.8   0.0       0.3     6e+02     117     154 ..     198     240 ..     185     250 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.5e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlL 27
                +viV+G G+AG  AA+++a+ G++v  
  KIR65984.1 43 TVIVVGTGLAGGSAAATLAEQGYRVRS 69
                59**********************975 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.3
                 -EEEEEECTTEEEEEEETT...S-EEEEC...EEEE--TT-BT- CS
        GIDA 117 eveeliveekkvkgvvted...getikak...avviatGtflkg 154
                 e+ eliv +++ +g+v +d   ge+ + +   avv+a+G + + 
  KIR65984.1 198 EMLELIVVDGRARGIVVRDlvtGEITS-EfadAVVLASGGYGNV 240
                 455555667777776655422133322.2344*******98765 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   2.2e-05     0.044       2      28 ..      42      68 ..      41      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.2e-05
                   EEEEEE--SHHHHHHHHHHHHTTHHEE CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvv 28
                    +V++VG+G+aG ++a  L+e+G rv+
     KIR65984.1 42 LTVIVVGTGLAGGSAAATLAEQGYRVR 68
                   68*********************9986 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00017      0.33       2      52 ..      43      93 ..      42     105 .. 0.88
   2 ?   -1.6   0.0      0.42   8.3e+02     113     164 ..     180     236 ..     178     240 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00017
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEET CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKilisGgGrcNvTnl 52
                 +viv+G G AG  aA+++a++g rV  +  ++++ r   i+ +G++N   +
   KIR65984.1 43 TVIVVGTGLAGGSAAATLAEQGYRVRSYCYQDSPRRAHSIAAQGGINAAKN 93
                 69************************9999999999999999999998764 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.42
                  HHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE......TTEEEEESEEEE---- CS
  HI0933_like 113 dallkelkeagvklrletevksvekeedgkfrvkt.k....seeeleadklvlAtGG 164
                  +al++++   +v+++ ++e+ ++   ++++  + + +    + ++  ad++vlA+GG
   KIR65984.1 180 QALERQIGLGNVEMNARHEMLELIVVDGRARGIVVrDlvtgEITSEFADAVVLASGG 236
                  57788888889999999999998776666555544223322344456899******9 PP

>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00016      0.32      23      72 ..      37      83 ..      22     102 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
      YjeF_N 23 spaekkvlvlvGsgnnGgdglaaArhLaqegakVtvllleeeekldedae 72
                ++ +k  +++vG g  Gg    aA+ La++g++V+ +++++++ + + ++
  KIR65984.1 37 ANRRKLTVIVVGTGLAGGS---AAATLAEQGYRVRSYCYQDSPRRAHSIA 83
                5778899**********97...6899**********99988776655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 4204.81
//
Query:       KIR65985.1  [L=311]
Description: LysR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-45  154.2  10.5    4.1e-45  153.7  10.5    1.2  1  LysR_substrate  LysR substrate binding domain
    8.2e-23   80.1   4.0      1e-22   79.8   0.8    2.7  2  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0095   15.7   0.0       0.02   14.7   0.0    1.6  1  SBP_bac_11      Bacterial extracellular solute-binding protei
  ------ inclusion threshold ------
       0.16   11.6   0.0       0.22   11.1   0.0    1.2  1  PBP_like_2      PBP superfamily domain
       0.34   10.5   0.0       0.46   10.1   0.0    1.1  1  RE_TdeIII       Type II restriction endonuclease, TdeIII


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.7  10.5   1.1e-48   4.1e-45       4     207 ..      91     294 ..      89     296 .. 0.98

  Alignments for each domain:
  == domain 1  score: 153.7 bits;  conditional E-value: 1.1e-48
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGG.SSS CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLar.gep 95 
                      rgr+r+ga+p+la++l pp+l+rfr ++P v+l+++eg s++l++ l++g+lDla++  p   +d+gl+a+++++e lv++  ++ p      +
      KIR65985.1  91 RRGRVRLGATPSLATSLAPPVLRRFRDAHPAVDLRVEEGGSQDLVRDLLRGDLDLALIIMPAqgADPGLHAEEILRESLVVASLAEVPGTSaAGE 185
                     79************************************************************************************999989889 PP

                     ECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETT CS
  LysR_substrate  96 vsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkg 190
                     ++  dL+++pl++++eg+ lrd+ ++a+reag++p+ ++   +++a+l++v+aGlG+al+p ++v++   ++++++  l++p ++r++++++r++
      KIR65985.1 186 LRVTDLRGQPLVMFREGYDLRDATLQACREAGFEPTLSVDGGEMDAVLSFVEAGLGVALVPGMVVAR---RPGVRVTRLAPPGVRRTIAVARRRD 277
                     9****************************************************************99...************************* PP

                     CCCHHHHHHHHHHHHHH CS
  LysR_substrate 191 relspavrafidflrea 207
                      e++ a r ++++l+e 
      KIR65985.1 278 VEPTHAGRELRRILLEY 294
                     ************99986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.8   2.9e-26     1e-22       1      60 []       5      64 ..       5      64 .. 0.98
   2 ?   -0.2   0.1      0.27   9.9e+02      48      60 .]     274     285 ..     267     285 .. 0.77

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 2.9e-26
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l+qlr+fvavae ++ft+AA+ +g++qp++s+qi +LE  lg+pLfeR  +++ LT+aGe
  KIR65985.1  5 LHQLRYFVAVAELRHFTQAADLVGITQPSLSKQIHALETSLGAPLFERVRGRIALTAAGE 64
                689*********************************************9999*******7 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.27
                 ESSSEEEE-HHHH CS
       HTH_1  48 RtgrglrLTeaGe 60 
                 R  r +++T aG+
  KIR65985.1 274 R-RRDVEPTHAGR 285
                 4.356******97 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.5e-06      0.02       3      52 ..      97     149 ..      95     197 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.5e-06
                 EEE-SSTHHHHH.HHHHHH.HHHH---EEEEESSHHHHHHHHHHH...-SEEE CS
  SBP_bac_11   3 vaaagslaaalr.elaaaF.eahtgvkvevsaggsgklarqiadga.rpDvwi 52 
                 + a +sla+ l+  +  +F  ah+ v+++v++ggs++l+r +++g  +  ++i
  KIR65985.1  97 LGATPSLATSLApPVLRRFrDAHPAVDLRVEEGGSQDLVRDLLRGDlDLALII 149
                 6678888888886799***889*********************9966444444 PP

>> PBP_like_2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.2e-05      0.22      19      70 ..     103     154 ..      82     172 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.2e-05
  PBP_like_2  19 tpapalrkladafekaapgakvnyastGSgagikalrngdvdfagsdrplte 70 
                    ++   ++  f +a+p ++++++ +GS++  ++l+ gd d+a++  p+++
  KIR65985.1 103 LATSLAPPVLRRFRDAHPAVDLRVEEGGSQDLVRDLLRGDLDLALIIMPAQG 154
                 444444456666********************************98766665 PP

>> RE_TdeIII  Type II restriction endonuclease, TdeIII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00013      0.46      38      75 ..      26      63 ..      15      84 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00013
   RE_TdeIII 38 llpkevlklssferslnTslGktifEkvAkiiAkeefk 75
                l++    +ls+ ++ l+TslG  +fE+v   iA +   
  KIR65985.1 26 LVGITQPSLSKQIHALETSLGAPLFERVRGRIALTAAG 63
                677777789*******************9988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2261.95
//
Query:       KIR65986.1  [L=1347]
Description: ATP-dependent helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.1e-241  801.4   2.2   8.7e-241  800.7   2.2    1.4  1  DUF3418      Domain of unknown function (DUF3418)
    4.7e-19   68.7   0.0    1.4e-18   67.1   0.0    1.8  1  HA2          Helicase associated domain (HA2)
    2.6e-18   66.1   0.0    5.3e-18   65.2   0.0    1.5  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
      1e-09   38.7   0.0    2.4e-09   37.5   0.0    1.6  1  Helicase_C   Helicase conserved C-terminal domain
    1.9e-06   27.8   0.2    7.6e-06   25.8   0.2    1.9  1  DEAD         DEAD/DEAH box helicase
     0.0001   22.6   0.1    0.00039   20.7   0.1    2.1  1  AAA_22       AAA domain
    0.00026   20.1   0.0    0.00054   19.1   0.0    1.5  1  T2SSE        Type II/IV secretion system protein
    0.00035   20.9   0.0     0.0012   19.2   0.0    1.9  1  AAA_19       AAA domain
     0.0013   18.7   0.2      0.004   17.1   0.2    1.8  1  NACHT        NACHT domain
     0.0062   16.3   3.3       0.02   14.6   0.1    2.7  2  AAA_30       AAA domain
     0.0073   15.6   0.0      0.012   14.9   0.0    1.3  1  DUF2075      Uncharacterized conserved protein (DUF2075)
  ------ inclusion threshold ------
      0.089   12.2   0.0       0.19   11.2   0.0    1.5  1  PhoH         PhoH-like protein
        0.2   11.3   0.1        2.1    7.9   0.0    2.4  2  SRP54        SRP54-type protein, GTPase domain
       0.77    9.3   5.4        1.3    8.6   0.0    2.9  2  AAA_25       AAA domain


Domain annotation for each model (and alignments):
>> DUF3418  Domain of unknown function (DUF3418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  800.7   2.2  6.8e-244  8.7e-241       1     582 [.     759    1342 ..     759    1343 .. 0.98

  Alignments for each domain:
  == domain 1  score: 800.7 bits;  conditional E-value: 6.8e-244
     DUF3418    1 krgavvatervtLyGlpivakRrvnygkidpeeaRelFIReALVegewetkhaFfahNrklleeveeleakaRRrDilvddetlfaFYdariPadvv 97  
                  k++av+a+e+vtLyG+p+v+ R+vn+g+idp+++RelFIR+ALVeg+w+t+h+F+++N+kll e+eele++aRRrDilvddet+faFYd+riPadvv
  KIR65986.1  759 KQAAVLAYEKVTLYGVPLVTARKVNFGRIDPALSRELFIRHALVEGDWSTHHQFWRDNQKLLTEIEELENRARRRDILVDDETIFAFYDERIPADVV 855 
                  79*********************************************************************************************** PP

     DUF3418   98 sarhfdkWwkkarkedpklLdltredLlreeaaevteedFPdslglgglelplsYqFePgseaDGVtvtvplalLnqvsaerfeWlVpGlleekvta 194 
                  s+rhfd+Wwkk+r++ p+lL++tre L++++  +++e+d+Pd+++++g++lpl+Y+F+Pg+++DGVtv++pl+lLnqv+ae f+W+VpGl+ee+v+a
  KIR65986.1  856 SGRHFDAWWKKERRQRPDLLTFTRELLVNAGRGGLDEADYPDEWRADGVTLPLTYTFDPGTPTDGVTVDIPLPLLNQVPAESFDWQVPGLREELVIA 952 
                  ********************************************99*************************************************** PP

     DUF3418  195 liksLPKalRrnlvPapdvaaavlerleekkpaegpLleaLaralrrltgveveeddfdlekLpahlrmnfrvvdekgkvlaegrdlaaLkarlaek 291 
                  li+sLPKa+Rrn+vP+pd+a+a+l+++   +p ++pLl+aL+r+lrr+tgv+v++d++++ kLpahlr+ frv+de++k +aeg+dl aL+++l+++
  KIR65986.1  953 LIRSLPKAVRRNFVPVPDYARAALAAI---TPGQEPLLDALTRQLRRMTGVTVPRDAWEPGKLPAHLRVSFRVLDEENKPVAEGKDLPALQRQLRQE 1046
                  ************************999...9****************************************************************** PP

     DUF3418  292 araavaaaakaaerkgltswdfgelpetveikrggqevkgypaLvdegdsvalrvfdteaeaaaahraGlrrLlllalkeqlkqlekqlpnkqklal 388 
                  +r+ vaaaa +  r+glt+wdfg+lp+t+e+ r+g  v++ypaLvdeg++v ++vfd+eae+ aah+aG+rrLl+l++++++k l+ +l+n++klal
  KIR65986.1 1047 VRQVVAAAAPDVARTGLTQWDFGTLPRTIEQVRAGYAVTAYPALVDEGSTVGVKVFDSEAEQSAAHWAGTRRLLRLTVPSPAKFLQGRLSNEAKLAL 1143
                  ************************************************************************************************* PP

     DUF3418  389 aaaplgsveaLlddliaaaldrlla..eelp.rdeaeFealleevraelaeeaqevvrlveeilaaaaevekklkkaks...laaladireqleeLv 479 
                  + +p+g v++L++d+  aa+d+l+a     p +d++ F+al+++vra+l++++ +v+ +v+++laaa +ve++l k+++   +aaladir+ql+ Lv
  KIR65986.1 1144 SRNPHGGVQELIADAAGAAIDKLVAdaGG-PaWDADGFAALRDRVRADLVDTVVDVMGRVRQVLAAAYAVEQRLGKTQNlavVAALADIRAQLSGLV 1239
                  ************************97532.35******************************************88888876557************ PP

     DUF3418  480 ypgfvaatpaerLqhlprYlkAielRleklkadparDaeklaeveeleqayaellaklpeeradseeleeirwlieElrVslFAqeLgTavpVSekR 576 
                  ++gfv++t+++rL++l rYl+Aie+Rl++l+ +p+rD++++++v++++++ya+lla+lp++r+ s+++++irw+ieElrV++FAq LgT++pVSe+R
  KIR65986.1 1240 HKGFVTETGYARLPDLLRYLTAIERRLDRLPGNPQRDRQQQDRVAAVQKEYADLLAALPPGRRGSAAVRQIRWMIEELRVNVFAQALGTPYPVSEQR 1336
                  ************************************************************************************************* PP

     DUF3418  577 lekala 582 
                  +++a++
  KIR65986.1 1337 IYRAMD 1342
                  ***997 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   1.1e-21   1.4e-18       2      78 ..     505     596 ..     504     626 .. 0.76

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 1.1e-21
         HA2   2 lelLvalgAL.....deegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeee............e 78 
                 ++lL++lgAL     d+ ++lT+lGr++a+lP++prla+m + +    +gc+ ev+ i+Aals +++  +++e++++ +++             
  KIR65986.1 505 VNLLHELGALdptetDPAKRLTPLGRRLAQLPVDPRLARMVIEG--ERNGCATEVVVIAAALSIQDPRERPAEKQAQADQAharfadsesdfvA 596
                 689*******9998888899************************..556*******************99998877666555555554443330 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   4.2e-21   5.3e-18       1      82 [.     669     745 ..     669     746 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 4.2e-21
                  HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHSTT CS
  OB_NTP_bind   1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfagq 82 
                  ++++ll Gl+++i+ kdp+k++y +ar + +++++p S+l+k    k+p+wv+ +elvet++l+ r   +++p+w++++a++
   KIR65986.1 669 VHQSLLPGLLSHIGLKDPQKHEYLGAR-GAKFALFPGSALFK----KPPRWVMAAELVETSRLWGRVAGRVEPEWVEPLAQH 745
                  69************************9.*************9....**********************************97 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.8e-12   2.4e-09      12     110 ..     320     442 ..     309     443 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.8e-12
                 HTTTTSEEEEEESSHHHHHH.....HHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH..... CS
  Helicase_C  12 leeeggkilifvntidrlek.....vklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv..... 97 
                   e  g+il+f+   +++ +      kl+++k+   g ++++l+++l++ e+ ++++   +  ++v++at+vae+++++p++++V++ +  r       
  KIR65986.1 320 AAEGPGDILVFLSGEREIRDtadalGKLVQSKRsllGTEILPLYARLSAAEQHRVFAPHTA--RRVVLATNVAETSLTVPGIKYVVDPGTARISryssr 416
                 4677899*******9977656555555555555789********************99955..67*********************9999944334567 PP

                 .............HHHHHHHTTSSST CS
  Helicase_C  98 .............tsyiqriGRtgRa 110
                              +s++qr+GR+gR 
  KIR65986.1 417 lkvqrlpiepvsqASANQRKGRCGRT 442
                 7888999999999************6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.2     6e-09   7.6e-06      11     171 ..     110     254 ..     104     258 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 6e-09
                 HHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEE..EESSHHHHHHHHHHHHHHTTTSTSEEEEEET.TSSHHHHHHHHHTTCSEEEEEHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  11 ilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkali..vePtreLaeqtlnnlkkfkkyidlrvlliig.gvaardqlskldngvdivvgtpg 106
                 i + + v+va+eTGsGKT+     +l    e    +g   li    P r  a+ +++++ + + +   ++  ++g +v+ +dq+s+      + ++t g
  KIR65986.1 110 IRDHQVVIVAGETGSGKTTQLPKICL----E--LGRGVHGLIghTQPRRLAARTVADRIAEELGT---ELGDVVGyKVRFTDQVSDR---SLVKLMTDG 196
                 5567789***********98555555....3..34444444433889999999999998777773...3334555456667777776...778899*** PP

                 HHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
        DEAD 107 rlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlpk 171
                  l+  l+t +  l+q  +l++DEa++ + +   df+   l+ql     + + l+  v++ SAT+++
  KIR65986.1 197 ILLAELQTDR-MLRQYDTLIIDEAHERSLN--IDFVLGYLRQL---LPRRPdLK--VVITSATIET 254
                 ****998887.6*************99887..77777777777...45555344..*******984 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   3.1e-07   0.00039       4     117 ..     112     238 ..     109     257 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.1e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevv.fvtlpsst..sskdllrellralglelka..................erlsseell.e 80 
                 ++++++v Ge+G+GKTt l ++  +l         +++v  ++  +++     ++++ +++++lg el +                  +  +   ll e
  KIR65986.1 112 DHQVVIVAGETGSGKTTQLPKICLEL---------GRGVHgLIGHTQPRrlAARTVADRIAEELGTELGDvvgykvrftdqvsdrslvKLMTDGILLaE 201
                 67899*********************.........666665333333334479************99999*********88877666666666666644 PP

      AAA_22  81 aleqalraravielliiDEaqhlrs...eealeeLrslln 117
                 + ++ + ++++   liiDEa+   s   + +l +Lr+ll 
  KIR65986.1 202 LQTDRMLRQYD--TLIIDEAHER-SlniDFVLGYLRQLLP 238
                 44555555555..9*******96.4447999999988865 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.2e-07   0.00054     117     150 ..     101     134 ..      52     142 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.2e-07
       T2SSE 117 kiaevlrkavrerglilvsGgTgsGKttllyall 150
                 + ++ l++a+r +++++v+G TgsGKtt l  + 
  KIR65986.1 101 ERKDDLAAAIRDHQVVIVAGETGSGKTTQLPKIC 134
                 55667999********************996554 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0     9e-07    0.0012       7     114 ..     110     222 ..     105     246 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 9e-07
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallve.....lggvkpeeillvaftgrAakelrerlaalgae.atTiHrlalldfddlltealelleeaeeekk 99 
                    ++v++v +  G+GKT+ l +i+ +l +     +g+ +p+++++ +++ r a+el ++l  + +   +   +++   + +l+t    ll e ++++ 
  KIR65986.1 110 IRDHQVVIVAGETGSGKTTQLPKICLELGRgvhglIGHTQPRRLAARTVADRIAEELGTELGDVVGYkVRFTDQVSDRSLVKLMT-DGILLAELQTDRM 207
                 567899999999************9998773333356778899999999999999999888554444233333443322222221.2223447788899 PP

      AAA_19 100 lqeee.llivDEfqdv 114
                 l+ ++ +li+DE+ + 
  KIR65986.1 208 LR-QYdTLIIDEAHER 222
                 95.555******9764 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   3.1e-06     0.004       2     142 ..     115     264 ..     114     280 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.1e-06
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C....................CHHHHCCSC CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvse....................vwavllelp 80 
                 +vi+ Ge GsGKTt l k++l++ +g      + l+ + + r+l  ++    +ad ++++l  + ++v                      ++       
  KIR65986.1 115 VVIVAGETGSGKTTQLPKICLELGRGV-----HGLIGHTQPRRLAART----VADRIAEELGTELGDVVGykvrftdqvsdrslvklmtdGI------- 197
                 89***********************99.....3455566666666654....4444444444444444333222444454445555444333....... PP

                 CCEE...............EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE CS
       NACHT  81 erlL...............lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeqleea 142
                    L               li+D + e +   ++     v   L++l+++   p  ++++t+ +    + ++ +++a
  KIR65986.1 198 ---LlaelqtdrmlrqydtLIIDEAHERSLNIDF-----VLGYLRQLLPR--RPDLKVVITSATIETDRFARHFADA 264
                 ...1444444444599999999999999988888.....99999999999..9999999998887777777766665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.7       0.3   3.9e+02     144     184 ..      44      84 ..      36      89 .. 0.81
   2 !   14.6   0.1   1.6e-05      0.02      15      97 ..     110     219 ..     101     225 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.3
      AAA_30 144 agigtaeLtevvRqkeseeraaalalregdaeealealadr 184
                 ++  + +L+ v+R ++++ r+aala  + d+++a ++ladr
  KIR65986.1  44 QRRLQRRLDGVRRLRDPQRREAALAEITADVARAEQRLADR 84 
                 5556679*********9999999999999999888888887 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.6e-05
      AAA_30  15 tsgdrvavltGpAGtGKttalkal.reaweaa.g.......grviglAptgkaAkvLaeelg....ieastiakllkrlk.................gr 83 
                   +++v+++ G  G+GKtt l ++  e+ +   g       +r+++ +   + A++L++elg     + + ++++                      ++
  KIR65986.1 110 IRDHQVVIVAGETGSGKTTQLPKIcLELGRGVhGlightqpRRLAARTVADRIAEELGTELGdvvgYKVRFTDQV----SdrslvklmtdgillaelQT 204
                 34556****************998555555443488888888888888889999999998884333233333333....23344666678888888844 PP

      AAA_30  84 arlepg.tllivDEa 97 
                  r+ ++ + li+DEa
  KIR65986.1 205 DRMLRQyDTLIIDEA 219
                 5555555*******9 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.2e-06     0.012       2      98 ..     114     220 ..     113     226 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.2e-06
     DUF2075   2 avvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvl....vlrealakkeekkkkkeafeklssfinnlsef............kkaeekk 84 
                 +vv+V G++G+GKt  l ++  el     +r ++ l++  + ++    ++  ++a++  +++ ++++ +   f  ++s               + + ++
  KIR65986.1 114 QVVIVAGETGSGKTTQLPKICLEL-----GRGVHGLIGHTQPRRlaarTVADRIAEEL-GTELGDVVGYKVRFTDQVSDRslvklmtdgillAELQTDR 206
                 79**********************.....33333344433333311223333343333.77777777777777777776667777777799999***** PP

     DUF2075  85 eepkedvvivDEAh 98 
                 + ++ d +i+DEAh
  KIR65986.1 207 MLRQYDTLIIDEAH 220
                 ************** PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015      0.19       6      34 ..     100     128 ..      97     220 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                 SHHHHHHHHHHHH-SEEEEE--TTSSTTH CS
        PhoH   6 tkeQkeylealkkndivfaiGpaGtGKty 34 
                 +++ ++++ a++++++v+++G++G+GKt 
  KIR65986.1 100 SERKDDLAAAIRDHQVVIVAGETGSGKTT 128
                 566778899******************95 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0017       2.1       2      23 ..     114     135 ..     113     221 .. 0.88
   2 ?    0.3   0.0      0.37   4.7e+02      42      71 ..    1304    1332 ..    1285    1344 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0017
                 EEEEEEESTTSSHHHHHHHHHH CS
       SRP54   2 nvillvGlqGaGKTttlaKLaa 23 
                 +v++++G +G+GKTt l K+  
  KIR65986.1 114 QVVIVAGETGSGKTTQLPKICL 135
                 6899**************9875 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.37
                  TTHHHHHHHHHHHTTEEEEESSTTSCHHHH CS
       SRP54   42 aaAveQLktlaeklgvpvikkkeeadpaav 71  
                   aAv Q++++ e+l+v+v+++  ++ p  v
  KIR65986.1 1304 SAAVRQIRWMIEELRVNVFAQALGT-PYPV 1332
                  58*****************987665.5444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   3.9       1.1   1.4e+03      84     139 ..      30      83 ..      25      88 .. 0.66
   2 ?    8.6   0.0   0.00098       1.3      30      62 ..     110     142 ..      98     219 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.1
      AAA_25  84 delrrRlravg.eal.rddarllvldlagveslpLfakdrggtl...ltadvdaleaaiee 139
                  el+rRl a++ +++ r+++rl+ +       ++L++++r++++   +tadv++ e+++ +
  KIR65986.1  30 RELHRRLPALMfRDQrRLQRRLDGV-------RRLRDPQRREAAlaeITADVARAEQRLAD 83 
                 4899999996655552444555444.......57888888777755677777777777665 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00098
      AAA_25  30 lpagelallaGapgtGKttlaldlalavatGkp 62 
                 ++ + ++++aG +g+GKtt +  ++l++ +G +
  KIR65986.1 110 IRDHQVVIVAGETGSGKTTQLPKICLELGRGVH 142
                 56799**************99999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      606  (0.0338); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.48
# Mc/sec: 8407.37
//
Query:       KIR65987.1  [L=124]
Description: biotin transporter BioY [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-08   31.8   0.1    1.2e-07   31.6   0.1    1.1  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
  ------ inclusion threshold ------
      0.011   15.4   1.4          1    9.0   0.2    2.1  2  LmjF365940-deam  A distinct subfamily of CDD/CDA-like deamina


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1   1.3e-11   1.2e-07       3      91 ..       6      97 ..       4     107 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.3e-11
                     HHHHHHHHHHHHHHHHHTTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHHTSSCETTEEEEE......EE--BHHHHHHHHH CS
  dCMP_cyt_deam_1  3 kdekllelalkaakeaqkcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaaknggsklegatlyv......tlePCsmCakaiiq 91
                     +d+ l++ a ++ak     ++ +V+a+  +   +++tg+n         ++AEv+ i +aa++g+++l +++++v       l+PC+ C +++  
       KIR65987.1  6 TDRALVQAATAVAKLRCRSDRHTVAAAARTAAGRVFTGVNVHHVT--GGPCAEVVVIGAAATQGETEL-ETIVAVgdrgrdVLTPCGPCQQVLRD 97
                     57789999999999887999999*****9999*********9755..559***********9965566.6777779***************9976 PP

>> LmjF365940-deam  A distinct subfamily of CDD/CDA-like deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2   0.00011         1      53      88 ..      33      66 ..       3      77 .. 0.68
   2 ?    6.4   0.1   0.00067         6     149     165 ..      80      96 ..      64     108 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00011
  LmjF365940-deam 53 ggdgreelvrgvNlEvSmPtGSlCsErnaigkalas 88
                     +  +  +++ gvN+     tG  C+E  +ig a + 
       KIR65987.1 33 ARTAAGRVFTGVNV--HHVTGGPCAEVVVIGAAATQ 66
                     22344559999995..6789***********98765 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00067
  LmjF365940-deam 149 rksnPLkPCGaCeewLk 165
                      r +  L+PCG C++ L+
       KIR65987.1  80 RGRDVLTPCGPCQQVLR 96 
                      555779********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 849.05
//
Query:       KIR65988.1  [L=650]
Description: bilirubin oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-23   80.8   0.1    1.5e-22   79.8   0.1    1.5  1  Cu-oxidase_2  Multicopper oxidase
    1.1e-06   28.7   0.3       0.15   12.1   0.0    3.8  4  Cu-oxidase_3  Multicopper oxidase
  ------ inclusion threshold ------
       0.03   14.5   0.0       0.15   12.1   0.0    2.1  2  Cu-oxidase    Multicopper oxidase
       0.55   10.2   8.0        1.2    9.1   7.1    2.2  1  TAT_signal    TAT (twin-arginine translocation) pathway signa


Domain annotation for each model (and alignments):
>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.1   3.3e-26   1.5e-22      36     134 ..     537     631 ..     514     634 .. 0.87

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 3.3e-26
                   EEET.TEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES.S-EEEEEEESSHHHHHTT-EEEE CS
  Cu-oxidase_2  36 tlpk.gevveiviqnntklpHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkadnpGvwllHCHilwHldqGmalqf 131
                   ++p  g ++e+++ n t+  HP+H H ++fqvlgrg++  +++ p++      +  dtv  +pg+ ++i ++ d pG++++HCH+l+H+d++m++ +
    KIR65988.1 537 ETPAlGVTEEWELRNCTEDAHPIHVHQVQFQVLGRGHDGRTPPGPAE-----RGFHDTVVAYPGQLTRIKVRFDLPGRYVWHCHLLEHEDNEMMRPI 628
                   44445899*******************************55555555.....5669**************************************998 PP

                   EEE CS
  Cu-oxidase_2 132 vvr 134
                    v 
    KIR65988.1 629 EVL 631
                   876 PP

>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00094       4.2      23      46 ..     101     125 ..      94     129 .. 0.91
   2 !    4.4   0.1    0.0083        37      48      69 ..     171     190 ..     167     199 .. 0.84
   3 !   12.1   0.0   3.3e-05      0.15      81     113 ..     231     267 ..     219     272 .. 0.79
   4 ?   -3.2   0.0       1.9   8.4e+03      81     103 ..     598     619 ..     590     628 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00094
                   SSBS-EEEEETT-EEEEEEEE-S.S CS
  Cu-oxidase_3  23 qfpgptievregdtvvvnvtNkl.d 46 
                   ++pgpti ++ g+ v+v+  N+l d
    KIR65988.1 101 AYPGPTIAATVGRPVRVTWCNQLvD 125
                   59********************954 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0083
                   -B-EEEET--S-GG.....GSC CS
  Cu-oxidase_3  48 ntsihwhGlqqrktswmDGvpg 69 
                   +t +h+hG + r++  +DG p 
    KIR65988.1 171 PTVMHVHGGHNRQE--SDGHPE 190
                   799***********..9*9886 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 3.3e-05
                   EEEEEE--S-SEEEEEEE--TT....HHH.TT-EEEEE CS
  Cu-oxidase_3  81 ftyrftvkqqagtlwYhshlsl....qqa.aGlaGaii 113
                    + ++  +q+  tlwYh+h+ +    +   aGlaG++ 
    KIR65988.1 231 TSMEYANDQRPTTLWYHDHTLGmtrvN-LyAGLAGFYR 267
                   46788899999*********9987633.3589999875 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 1.9
                   EEEEEE--S-SEEEEEEE--TTH CS
  Cu-oxidase_3  81 ftyrftvkqqagtlwYhshlslq 103
                    + +++ +   g + +h hl  +
    KIR65988.1 598 TRIKVRFDL-PGRYVWHCHLLEH 619
                   455555555.6788999887664 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.15      55     127 ..     344     428 ..     308     443 .. 0.83
   2 ?   -2.2   0.0      0.88   3.9e+03     109     142 ..     589     622 ..     587     627 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
                 TTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEE...............TCETTS.EEEESCEEE-TTEEEEEEEEE-S.S CS
  Cu-oxidase  55 dgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvev...............Dgvyve.pvevdsldIavGqrysvlvtanq.a 127
                 ++ +++ +   ++ +yr+r+ n+ +   l +s+ +H      +               Dg +   pv   ++ +a Gqr +v+v++++ +
  KIR65988.1 344 VNGATWPVLRVQRRRYRFRLLNGCNARFLMLSVTDH-----PTrrpgrpalplwqvgsDGGFLPePVAAPRILLANGQRADVVVDFTDvP 428
                 45667777788899**********************.....45778888888888888***9988*******************997644 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.88
                 CEEE-TTEEEEEEEEE-SSSEEEEEEEE.GSSSCH CS
  Cu-oxidase 109 sldIavGqrysvlvtanqapgnYwivas.grsnli 142
                 ++  ++Gq + + v ++  pg Y+ +++  +++ +
  KIR65988.1 589 TVVAYPGQLTRIKVRFDL-PGRYVWHCHlLEHEDN 622
                 566689**********98.****999955444444 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   7.1   0.00027       1.2       1      21 [.       1      21 [.       1      27 [. 0.90

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00027
  TAT_signal  1 klSRRdFLKgsAAaaAAaalg 21
                +++RR ++ ++AA++AA++l+
  KIR65988.1  1 MVTRRRLIAAGAAGGAALLLP 21
                68*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 4290.44
//
Query:       KIR65989.1  [L=348]
Description: iron ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-85  285.1  32.1    6.4e-85  284.9  32.1    1.0  1  FecCD     FecCD transport family


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.9  32.1   3.6e-89   6.4e-85       2     312 .]      33     342 ..      32     342 .. 0.99

  Alignments for each domain:
  == domain 1  score: 284.9 bits;  conditional E-value: 3.6e-89
       FecCD   2 lllllllslllgavkispsevfeallgkadsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllgslsl 100
                 l+l++l+s++lg+ ++ p  v++al++ +   + +iv elrlpr++++llvG aLavaG+l+Q++trNpLa+P ilGis+ga++g+vla++++ g  +l
  KIR65989.1  33 LALAVLASFALGSRPLAPGAVWHALVAPDGGDATTIVRELRLPRTALGLLVGLALAVAGVLFQALTRNPLAEPRILGISAGASFGVVLAIAVF-GVGTL 130
                 7899****************************************************************************************9.9**** PP

       FecCD 101 falplaaflgallalllvllla.rkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllllllar 198
                 ++++++ ++galla l v+++a r r gasp++l L+G a+ a l+al+ +ll + +++++e+++fw +G l g+    +  +l+++l++lll++l+ar
  KIR65989.1 131 AGYVWFGIAGALLAGLAVFAVAnRARDGASPVTLALTGAALDASLGALVYALLSI-DARTFEEYRFWVVGGLTGRGVGVAGQVLPFVLAGLLLAVLVAR 228
                 **********************999****************************99.******************************************* PP

       FecCD 199 kldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptelpvgiv 297
                  ld+lalgd++A+ lG +v  vrl   ++ +llt++ava++Gpi+FvGL+vPh+ar+lvgadhr++l ++allG +lll ad+++rl++ p e+p+g+v
  KIR65989.1 229 GLDALALGDDVARGLGHRVGLVRLGGGAAGVLLTGAAVAAAGPIAFVGLAVPHLARALVGADHRWTLAVAALLGPALLLGADVAGRLVAPPGEVPAGVV 327
                 *************************************************************************************************** PP

       FecCD 298 taliGapffiylllr 312
                 tal+Gap++++l++r
  KIR65989.1 328 TALVGAPLLAFLVRR 342
                 ************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2658.10
//
Query:       KIR65990.1  [L=288]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-30  105.4   0.0    4.1e-30  105.1   0.0    1.1  1  ABC_tran      ABC transporter
    8.2e-09   35.7   0.0    1.4e-05   25.1   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    4.1e-06   26.4   0.0      0.026   14.0   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
      4e-05   23.3   0.1    8.4e-05   22.2   0.1    1.5  1  AAA_29        P-loop containing region of AAA domain
    4.9e-05   23.8   0.9    0.00012   22.5   0.9    1.6  1  AAA_16        AAA ATPase domain
    0.00034   19.5   0.1      0.019   13.8   0.0    2.3  2  ABC_ATPase    Predicted ATPase of the ABC class
    0.00043   20.1   0.0     0.0007   19.4   0.0    1.2  1  AAA_15        AAA ATPase domain
    0.00093   19.0   0.3     0.0022   17.8   0.0    1.6  2  AAA_30        AAA domain
      0.001   19.6   0.0     0.0014   19.2   0.0    1.1  1  AAA_23        AAA domain
     0.0014   18.2   0.0     0.0026   17.4   0.0    1.3  1  AAA_27        AAA domain
     0.0082   16.4   0.1      0.024   14.9   0.1    1.9  1  AAA_22        AAA domain
     0.0085   16.3   0.1      0.031   14.5   0.0    1.9  2  AAA_33        AAA domain
  ------ inclusion threshold ------
      0.012   15.4   0.0        1.3    8.7   0.0    2.2  2  PRK           Phosphoribulokinase / Uridine kinase family
      0.017   14.7   2.8      0.045   13.3   2.7    2.0  1  AAA_25        AAA domain
      0.019   15.0   0.0       0.04   13.9   0.0    1.5  1  AAA_14        AAA domain
      0.042   12.6   0.1      0.076   11.8   0.0    1.4  2  Adeno_IVa2    Adenovirus IVa2 protein
      0.049   12.9   0.0      0.083   12.2   0.0    1.2  1  Zeta_toxin    Zeta toxin
      0.051   13.8   0.0      0.072   13.3   0.0    1.5  1  AAA_28        AAA domain
      0.064   12.6   0.0       0.12   11.7   0.0    1.4  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.065   13.3   0.0       0.23   11.5   0.0    2.0  1  MMR_HSR1      50S ribosome-binding GTPase
      0.072   13.0   0.0       0.12   12.3   0.0    1.2  1  ATPase_2      ATPase domain predominantly from Archaea
       0.14   12.0   0.0       0.21   11.5   0.0    1.2  1  Rad17         Rad17 P-loop domain
       0.15   12.0   0.1       0.31   11.0   0.1    1.5  1  MutS_V        MutS domain V
       0.23   11.8   0.0       0.59   10.5   0.0    1.8  1  RNA_helicase  RNA helicase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   0.0   5.5e-33   4.1e-30       1     136 [.      17     165 ..      17     166 .. 0.96

  Alignments for each domain:
  == domain 1  score: 105.1 bits;  conditional E-value: 5.5e-33
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................esd 82 
                 l+ ++++l +g  ++ivG+n +GKStLl+++a+ll+p +G++lldg+ +++ +++++ +++gvlpq p + +++tv++                  +++
  KIR65990.1  17 LDGLDVTLPAGAFTVIVGPNACGKSTLLRTMARLLTPRSGTVLLDGTAIRDLPTREVARRLGVLPQSPLVPEGVTVADLvgrgrqpyqrwwrqwsaADS 115
                 68899*************************************************************************9*******9999999877777 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + +++a++  +  +l+d++v     +LSgGq+qrv +a++l+++ + lllDEpt
  KIR65990.1 116 AAVDEAMALADVAGLADRPV----DTLSGGQRQRVWIAMTLAQDTEALLLDEPT 165
                 779*****************....*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.9e-08   1.4e-05       1      24 [.      29      52 ..      29      85 .. 0.80
   2 !    8.9   0.0    0.0016       1.2     231     294 ..     132     193 ..     105     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.9e-08
      AAA_21  1 lnvliGpNgsGKSnLLdaldllar 24
                ++v++GpN++GKS+LL+++  l  
  KIR65990.1 29 FTVIVGPNACGKSTLLRTMARLLT 52
                8******************99853 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0016
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQvil 294
                 ++p++ lS G+++    +++ l+++     ll+DEp ++L+ + + ++l+ll +l++ +g  v++
  KIR65990.1 132 DRPVDTLSGGQRQR-VWIAMTLAQDT--EALLLDEPTTFLDLAHQVEVLDLLHRLRAeRGRTVVA 193
                 57888889999998.77888888777..78************99999999984444335666665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.5e-05     0.026      25      51 ..      28      54 ..      19      68 .. 0.83
   2 !   10.1   0.0   0.00051      0.38     136     204 ..     137     201 ..     115     215 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.5e-05
                SEEEEEESTTSSHHHHHHHHHHHCTT. CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAilFvLGer 51
                 ft+ivGpN +GKs ll  +  +L  r
  KIR65990.1 28 AFTVIVGPNACGKSTLLRTMARLLTPR 54
                69**************99987777655 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00051
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlek 204
                 +LSgG+++ v +a+ +A      +   llDe    LD ++  +v +ll++ + +    v+++ +++ + 
  KIR65990.1 137 TLSGGQRQRVWIAMTLAQ----DTEALLLDEPTTFLDLAHQVEVLDLLHRLRAERGRTVVAVLHDLNQA 201
                 7***********999984....444579*********************99887666666665555444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   1.1e-07   8.4e-05      16      50 ..      21      55 ..      14      59 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.1e-07
      AAA_29 16 tieidlkg.atlltGpsGsGKSTllDAiqalLvpak 50
                ++++  +g +t+++Gp+  GKSTll  ++ lL+p++
  KIR65990.1 21 DVTLP-AGaFTVIVGPNACGKSTLLRTMARLLTPRS 55
                55554.6669************************87 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.9   1.6e-07   0.00012      25     154 ..      28     190 ..      14     215 .. 0.57

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.6e-07
      AAA_16  25 elvllsGesGvGKsslvrellralekdggif.lrgkcdql..esaipysalaqalareellrqllde...............aesaeleawrekleeal 105
                   ++++G+ ++GKs+l+r+ +r l+ + g + l g++ +   +++        ++ r ++l q                   + ++ +++w+++  +a+
  KIR65990.1  28 AFTVIVGPNACGKSTLLRTMARLLTPRSGTVlLDGTAIRDlpTRE--------VARRLGVLPQSPLVpegvtvadlvgrgrqPYQRWWRQWSAADSAAV 118
                 5789*****************999999655559999988844333........2222244444444422222222222233333333444444333333 PP

      AAA_16 106 a............................avpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslql 154
                                              ++  la + +  ll++ + +l+l+++     v vlD l++++++    
  KIR65990.1 119 DeamaladvagladrpvdtlsggqrqrvwIAMTLAQDTEALLLDEPTTFLDLAHQ-----VEVLDLLHRLRAERGRT 190
                 3666667777777884444445555555544444444447777777777777766.....55677777776644333 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.6e-05     0.019     241     265 ..      23      48 ..      10      51 .. 0.87
   2 ?    3.3   0.0     0.038        28     324     358 ..     139     173 ..     134     218 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.6e-05
                 EE-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAle 265
                  +p G  t+IvG+++ GKsTLL+ ++
  KIR65990.1  23 TLPAGaFTVIVGPNACGKSTLLRTMA 48 
                 5789989***************9876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.038
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH-- CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmir 358
                 SG   q ++i+  l  ++++lL+DE t+   l ++
  KIR65990.1 139 SGGQRQRVWIAMTLAQDTEALLLDEPTTFLDLAHQ 173
                 899999999****************9886666554 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   9.3e-07    0.0007      20      48 ..      25      52 ..      20      74 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 9.3e-07
      AAA_15 20 dlseeltvliGkNnsGKSsilealdlFln 48
                +    +tv++G+N++GKS++l+ +  +l+
  KIR65990.1 25 PAGA-FTVIVGPNACGKSTLLRTMARLLT 52
                5555.9***************99988887 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.9e-06    0.0022      19      99 ..      28     123 ..      21     134 .. 0.81
   2 ?   -2.3   0.1       4.1   3.1e+03     154     167 ..     180     193 ..     151     215 .. 0.54

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.9e-06
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrvi..glAptgkaAkvLaeelgi........eastiakllkrlk.....grarlepgtllivDEagm 99 
                  ++v++Gp   GK+t+l++++++++ + g+v+  g A      +++a+ lg+        e+ t+a l+ r +     ++ ++++++   vDEa  
  KIR65990.1  28 AFTVIVGPNACGKSTLLRTMARLLTPRSGTVLldGTAIRDLPTREVARRLGVlpqsplvpEGVTVADLVGRGRqpyqrWWRQWSAADSAAVDEAMA 123
                 4899*********************99767765678866666666666666555556678*********9999****977999999*******954 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.1
      AAA_30 154 vvRqkeseeraaal 167
                 ++R + ++ r+++ 
  KIR65990.1 180 LHRLRAERGRTVVA 193
                 22222222222222 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.9e-06    0.0014      21      44 ..      29      52 ..      18      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.9e-06
      AAA_23 21 ltlItGpNGaGKTTildAiklaLy 44
                +t+I+GpN +GK+T+l+ +   L+
  KIR65990.1 29 FTVIVGPNACGKSTLLRTMARLLT 52
                79**************98887776 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.5e-06    0.0026      24      50 ..      25      51 ..      17      53 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.5e-06
      AAA_27 24 eeadlhliyGpNEAGKstalrAisdll 50
                 +  +++i+GpN  GKst+lr + +ll
  KIR65990.1 25 PAGAFTVIVGPNACGKSTLLRTMARLL 51
                46789******************9997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   3.2e-05     0.024       6      65 ..      28      78 ..      26     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.2e-05
      AAA_22  6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl.lrellralg 65
                 ++v++G+  +GK+tllr++++ l+        r+++v+ + ++    +dl  re++r lg
  KIR65990.1 28 AFTVIVGPNACGKSTLLRTMARLLTP-------RSGTVLLDGTA---IRDLpTREVARRLG 78
                589*******************9953.......44444433322...44444555555555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.1e-05     0.031       3      34 ..      31      65 ..      29     128 .. 0.78
   2 ?   -0.8   0.1       2.1   1.5e+03      19      38 ..     152     184 ..     142     227 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.1e-05
      AAA_33  3 llvGlpGsGKstlaerllkklg....avllssdtlr 34
                ++vG++++GKstl++ +++ l+    +vll+  + +
  KIR65990.1 31 VIVGPNACGKSTLLRTMARLLTprsgTVLLDGTA-I 65
                78***************99998888555555443.3 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.1
      AAA_33  19 llkklgavllssdt.............lrrrlf 38 
                 l++ + a ll+++t             l+ rl+
  KIR65990.1 152 LAQDTEALLLDEPTtfldlahqvevldLLHRLR 184
                 555555666666664444333333333222222 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.031        23       4      24 ..      32      52 ..      29      74 .. 0.84
   2 ?    8.7   0.0    0.0018       1.3     135     169 ..     167     201 ..     155     214 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.031
         PRK  4 vagsSGaGkttvarklekifg 24
                + g+ ++Gk+t+ r++  ++ 
  KIR65990.1 32 IVGPNACGKSTLLRTMARLLT 52
                78999***********99887 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0018
         PRK 135 yvdisidlelarklqRDiaeRGrsleavldsilrr 169
                 ++d  +++e+   l+R +aeRGr++ avl+ ++  
  KIR65990.1 167 FLDLAHQVEVLDLLHRLRAERGRTVVAVLHDLNQA 201
                 89999***********************9988854 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.7   6.1e-05     0.045      29      59 ..      23      55 ..      13     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.1e-05
      AAA_25 29 llpagelallaGapgtGKttlaldlalava..t 59
                 lpag++++++G+ ++GK+tl+  +a  ++  +
  KIR65990.1 23 TLPAGAFTVIVGPNACGKSTLLRTMARLLTprS 55
                58*******************998887666554 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.4e-05      0.04       4      36 ..      29      60 ..      26      78 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.4e-05
      AAA_14  4 ilvitGaRrvGKTtllkqlikellvkkesilyi 36
                  vi+G+  +GK+tll+++++ l  +++ ++ +
  KIR65990.1 29 FTVIVGPNACGKSTLLRTMARLLT-PRSGTVLL 60
                579***************996555.55555555 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0001     0.076      90     122 ..      30      60 ..      20      75 .. 0.85
   2 ?   -3.8   0.0       5.7   4.3e+03     235     254 ..     188     207 ..     180     213 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0001
  Adeno_IVa2  90 GviyGPtGsGksqllrnlissklisPiPetvif 122
                  vi GP  +Gks llr++  ++l+ P   tv++
  KIR65990.1  30 TVIVGPNACGKSTLLRTM--ARLLTPRSGTVLL 60 
                 69**************97..7999999999986 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.7
  Adeno_IVa2 235 gfsvlvvlhnlnPrsdiagn 254
                 g +v+ vlh+ln  +  a+ 
  KIR65990.1 188 GRTVVAVLHDLNQAARYADH 207
                 56788999999987776655 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011     0.083      20      57 ..      31      68 ..      26      76 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
  Zeta_toxin 20 llgGqpGAGKselaellkdelerqgnvvrldpDdlRel 57
                +++G  ++GKs+l++ +++ l+++++ v ld++ +R l
  KIR65990.1 31 VIVGPNACGKSTLLRTMARLLTPRSGTVLLDGTAIRDL 68
                78999****************************99975 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   9.7e-05     0.072       3      48 ..      31      82 ..      29     200 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.7e-05
      AAA_28  3 vitGgestGKTtlleaLaar.....gypvv.pEaareileeklakgedalpw 48
                vi+G+  +GK+tll+ +a+      g++ +   a r++ + + a++ + lp+
  KIR65990.1 31 VIVGPNACGKSTLLRTMARLltprsGTVLLdGTAIRDLPTREVARRLGVLPQ 82
                9****************96545556887777777777777777777776665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00017      0.12      25      95 ..      30     100 ..      12     104 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllpplseeealevakiasvagkkeeek..llkrrpfraphhsaskaalvGggs 95 
                    ++vGp  +GK+ l + ++ ll+p s +  l+ ++i+ + +++ +++  +l + p++   + ++ a lvG g+
    KIR65990.1  30 TVIVGPNACGKSTLLRTMARLLTPRSGTVLLDGTAIRDLPTREVARRlgVLPQSPLV--PEGVTVADLVGRGR 100
                   4679*******************************9998775544430034444443..34455556666665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00031      0.23       3      22 ..      31      54 ..      29     206 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00031
                EEEESTTSSHHHHHHHHHT....S CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg....e 22
                +ivG    GKStL++++ +    +
  KIR65990.1 31 VIVGPNACGKSTLLRTMARlltpR 54
                79**************99744331 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00016      0.12      22      44 ..      29      51 ..      24      59 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00016
    ATPase_2 22 iyfiYGpegsGKtaLlkeiienl 44
                + +i Gp  +GK++Ll+ ++  l
  KIR65990.1 29 FTVIVGPNACGKSTLLRTMARLL 51
                789**************998766 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00029      0.21      49      73 ..      31      55 ..      21      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00029
       Rad17 49 LisGPsGCgkstvvkvLskelgikl 73
                +i GP  Cgkst ++ +++ l+++ 
  KIR65990.1 31 VIVGPNACGKSTLLRTMARLLTPRS 55
                799***************9998765 PP

>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00041      0.31       2      19 ..      31      48 ..      30      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00041
                EEE-STTSSHHHHHHHHH CS
      MutS_V  2 litGpnmaGkstylrqva 19
                +i Gpn  Gkst+lr +a
  KIR65990.1 31 VIVGPNACGKSTLLRTMA 48
                89*************987 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00079      0.59       2      25 ..      31      54 ..      30     132 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00079
  RNA_helicase  2 wlyGpsgeGKStlakeLakallkk 25
                  +++Gp+ +GKStl +++a+ l+ +
    KIR65990.1 31 VIVGPNACGKSTLLRTMARLLTPR 54
                  689*************99887744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.48
# Mc/sec: 1801.71
//
Query:       KIR65991.1  [L=315]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-28   98.3   0.3    6.9e-28   97.8   0.3    1.2  1  Peripla_BP_2  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.3   3.8e-32   6.9e-28       1     230 [.      54     283 ..      54     290 .. 0.92

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 3.8e-32
                   EEE-SHHHHHHHHHTT-GGGEEEB-GGG--GGGGGGT....TS-BSBESSSB-HHHHHHH--SEEEE-GGG...GGGHHHHHHHS-EEE----TTSH CS
  Peripla_BP_2   1 iaslspsvteillalGatdkvvgvdtttsdpldadklee..aivevgadgeidvEklaalkPDlvilskglgltdedeellksgiptvivessntge 95 
                   +++l+++  ++ l lG+t+  +++++ ++ +  + ++e+   i+evg  +e+d+E++ alkPDl+++sk+   +++ +++l++++ptv+ e      
    KIR65991.1  54 VVVLDTDKIDTALSLGVTPVGAATAGEARSWPTYFGEEKlaGIKEVGVLTEPDLEAINALKPDLILGSKFR--QEKFYDELAAIAPTVFTEKVG--I 146
                   89*****************9999999999998887766687******************************..*******************99..7 PP

                   HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT.-EEEEEEEETTE..EEEE-TTSTTTHHHHTS--EES.TTT--....STT-EEE-HH CS
  Peripla_BP_2  96 slkeqiralgellgledeaeklvaeidsklaaaksaidsekpkpvlvfggadeggyvvagsnsyigdlldalgieni.aaesk....kseyeeisaE 187
                    +ke++   g++lg+e++a++l a ++++  ++++++  + +++v ++    +g++ v g +s+ g ++ + g+     ++       + ++ +saE
    KIR65991.1 147 TWKENFLLDGQALGKEQQAKDLLAAYEKRAKDFGAKLGDAADRTVSIVR-FIPGAIRVYGPDSFSGIVVGDTGLGRPeRQQ-LagkeDKRFDLVSAE 241
                   ****************************************666666666.56668899999**********9998883333.258899********* PP

                   HHHHH--SEEEEEEHHHHT-S--HHHHT-SHHHHTSHHHHTT- CS
  Peripla_BP_2 188 qilasdpdvifvsgraeadnktgleflkenpllaelpAvkngr 230
                   ++++ d+dvifv+    +++ + ++ +   +l+++l Avk gr
    KIR65991.1 242 RVNEVDADVIFVTAY-GEKAAAEQATVTGGTLWKGLSAVKAGR 283
                   ***************.*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2197.47
//
Query:       KIR65992.1  [L=354]
Description: hypothetical protein TK50_12090 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   18.9   0.0     0.0025   17.9   0.0    1.5  1  MTES_1575  REase_MTES_1575
     0.0057   16.5   0.0     0.0096   15.8   0.0    1.3  1  DUF559     Protein of unknown function (DUF559)


Domain annotation for each model (and alignments):
>> MTES_1575  REase_MTES_1575
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.8e-07    0.0025      26      94 ..     280     344 ..     260     345 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.8e-07
   MTES_1575  26 riDlvvedpgkyllaIecdgdkyhsskeardrdierqevLerlGWkilRiwssdwyrnpeeeleklvea 94 
                 r+Dl++    ++++a+e dg  +h ++e+ +rd++r + L    W +l+++ +   ++ +  l+++++a
  KIR65992.1 280 RLDLAWP---EFRVAVEYDGF-WHDDPEQFHRDRRRLNRLLGGDWLVLHVTARRLREDFDGFLAEVRAA 344
                 5566554...57********9.9999*************************999999888888887776 PP

>> DUF559  Protein of unknown function (DUF559)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.1e-06    0.0096      47     108 ..     282     345 ..     259     346 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.1e-06
                 EEEETTTTEEEEEE-------..----HHHHHHHHHTT-EEEEEEHHHHHH-HHHHHHHHHHHH CS
      DUF559  47 DfvclkaklivelDGaqhdee..eeyDaeRtelLeslGftvlRfkndevlknieevleeilkal 108
                 D +  + ++ ve DG  hd+    ++D +R + L    + vl     +++++ ++ l+e+ +al
  KIR65992.1 282 DLAWPEFRVAVEYDGFWHDDPeqFHRDRRRLNRLLGGDWLVLHVTARRLREDFDGFLAEVRAAL 345
                 67777899***********88324689999999999*********************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2662.92
//
Query:       KIR65993.1  [L=215]
Description: hypothetical protein TK50_12095 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1696.75
//
Query:       KIR65994.1  [L=837]
Description: DEAD/DEAH box helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-219  730.1   1.1   1.5e-219  729.7   1.1    1.1  1  DUF3516     Domain of unknown function (DUF3516)
      3e-12   46.7   0.0    8.8e-12   45.1   0.0    1.8  2  DEAD        DEAD/DEAH box helicase
    2.2e-06   28.0   0.0    4.1e-06   27.1   0.0    1.5  1  Helicase_C  Helicase conserved C-terminal domain
    0.00031   20.8   0.0      0.001   19.1   0.0    1.9  1  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.034   14.1   0.0    1.6  1  RecO_N      Recombination protein O N terminal
      0.042   13.6   0.0      0.085   12.6   0.0    1.4  1  IstB_IS21   IstB-like ATP binding protein
       0.12   11.7   0.0       0.32   10.3   0.0    1.6  1  DUF3638     Protein of unknown function (DUF3638)


Domain annotation for each model (and alignments):
>> DUF3516  Domain of unknown function (DUF3516)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  729.7   1.1    6e-223  1.5e-219       1     457 []     374     834 ..     374     834 .. 0.97

  Alignments for each domain:
  == domain 1  score: 729.7 bits;  conditional E-value: 6e-223
     DUF3516   1 APeheienaralakagddpkklkkvkkkkapegfvswsektferLieaepEpLtsrfkvshamllnvlaregdavaalrrLlednhesrakqrklirra 99 
                 APeh+ien++alakagddpkk++kv++kk+peg + w + tf+rL+eaepEpLts+f+vsh+mllnv+ r+gda+aa+r+Ll+dnhe+ra+qr++irra
  KIR65994.1 374 APEHVIENEKALAKAGDDPKKRRKVVRKKPPEGSIGWGQPTFDRLVEAEPEPLTSSFQVSHSMLLNVIGRPGDAFAAMRHLLTDNHEDRAAQRRHIRRA 472
                 9************************************************************************************************** PP

     DUF3516 100 ieifrsLleagvverleeedeegrkvrltvdlqedFaLnqpLspfalaalelLdpesetyaldvvsviEavledPrqvlsaqqkkargeavaelKaeGv 198
                 i+i+r+L++ gvve+l+e+de+gr+vrltvdlq dFaLnqpLsp alaa+elLd es++yaldv+sviE++l+dPrqvlsaqq kargeava++KaeG+
  KIR65994.1 473 IAIYRALRAGGVVEELPEPDETGRRVRLTVDLQLDFALNQPLSPLALAAIELLDAESPSYALDVLSVIESILDDPRQVLSAQQFKARGEAVAAMKAEGI 571
                 *************************************************************************************************** PP

     DUF3516 199 eYeeRmelleevtyPkPleelleaafetyakshPwvadeelspKsvvRdmleramtFseyvseyglaRsEGvlLRYLsdayraLrqtvpeearteeled 297
                 eYe R+ell++vt+PkPl+ell+aa+e+y+++hPwvad++lspKsvvRdm+eramtF+eyv++y+l+RsEG++LRYL+day++Lrqtvpe+a+teel d
  KIR65994.1 572 EYEARLELLDDVTWPKPLAELLDAAYEMYRRGHPWVADHQLSPKSVVRDMYERAMTFTEYVQFYSLTRSEGLVLRYLADAYKTLRQTVPEDAKTEELID 670
                 *************************************************************************************************** PP

     DUF3516 298 liewLgelvrqvDsSLldeWealadpaaeeeeeaa...eeeaaeavtanerafrvlvRnalfrrvellarekeeelaeldee...daeeweealdayfd 390
                 liewL elvrqvDsSL+deWe+l++p++ +e+++a    +++++avt+n+rafrvlvRnalfrrvel+a ++++ l+eld++   da++w++al++yf+
  KIR65994.1 671 LIEWLHELVRQVDSSLIDEWERLKNPSDVAEAAEAhaaLDDRPPAVTRNARAFRVLVRNALFRRVELAALRRWDLLGELDAAdgwDADAWADALEPYFE 769
                 ************************99666555554445788899*************************************8899************** PP

     DUF3516 391 ehdeigtgaeaRspellsideeeeervwevrQilddpegdhdwaieaevdldasdeagevvlrvvev 457
                  +d+igtg++aR+p+ll+i+  +++ +w+vrQilddp+gdhdw+i+aevdl+asde g++v+r+++v
  KIR65994.1 770 AYDSIGTGPDARGPALLMIE--QGRDRWTVRQILDDPDGDHDWRISAEVDLAASDEVGAAVVRITDV 834
                 *******************5..4678************************************99876 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   3.4e-15   8.8e-12       2     170 ..      33     178 ..      32     183 .. 0.85
   2 ?   -3.1   0.0       2.2   5.6e+03     106     136 ..     666     696 ..     617     714 .. 0.64

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 3.4e-15
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 + Q+ea+ +i++g +v+++ +TGsGK+l+++ + +++++     +   +++ +P ++L+ + +  l +++   d +v  +++g+a       +++++ i
  KIR65994.1  33 PHQEEAVIEIVSGANVIMNTPTGSGKSLVAIAAHFAALA-----DDRTTFYTAPIKALVSEKFFALCEVFGA-D-NV-GMLTGDAS------VNADAPI 117
                 79*********************************9994.....45579************99999999994.3.34.34555555......44789** PP

                 EEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 +  t + l++l  ++g     +v  +++DE + + + +++  ++  + +l         q q++++SATl 
  KIR65994.1 118 ICCTAEVLANLAlREGA--RADVGQVIMDEFHFYAEPDRGWAWQVPIIEL--------PQAQFVLMSATLG 178
                 **********7746666..999******************9999999999........3567*******97 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.2
                 HHHHHHHHCTSSHCTTEEEEEEETHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 106 grlddllstgklnlsqvrflVlDEadrlldq 136
                 + l+dl++  +  ++qv    +DE  rl + 
  KIR65994.1 666 EELIDLIEWLHELVRQVDSSLIDEWERLKNP 696
                 4555555333323677777777887777665 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.6e-09   4.1e-06      39     111 .]     282     363 ..     228     363 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.6e-09
                 T.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS...SSH.......HHHHHHHTTSSSTT CS
  Helicase_C  39 k.gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp...rnv.......tsyiqriGRtgRag 111
                      + v+h+ +  + r+ + +  ++g  +v+  td ++ Gi++p +++V + +l      v       ++++q +GR+gRag
  KIR65994.1 282 LvRHGIGVHHAGMLPKYRRLVETLAQAGLLKVICGTDTLGVGINVP-IRTVLFTGLSkydG-VrtrllkaREFHQIAGRAGRAG 363
                 156778889************************************9.9****999997640.24455666************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     4e-07     0.001       3     169 ..      30     177 ..      28     179 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4e-07
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekds 101
                 +l+++Qeea+ ++++        +++++ +TG+GK+lva+++  + l     + ++  +p k+l++    ++ +++  +   + + ++gd   +     
  KIR65994.1  30 DLYPHQEEAVIEIVSG------ANVIMNTPTGSGKSLVAIAAHFAALAD--DRTTFYTAPIKALVSEKFFALCEVFGAD---NVGMLTGDASVN----- 112
                 6899*****9999855......57***************6666666554..3489999*******99888888888877...688899998888..... PP

                 ..-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T...TTHH.HHHT---SEEEEEESS- CS
      ResIII 102 tnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk...swre.ilekfkeavllglTATp 169
                  ++ i+  t + l +          e  r     +i+DE H +++ +   +w+  i+e  +++++l ++AT+
  KIR65994.1 113 ADAPIICCTAEVLANLA------LREGARADVGQVIMDEFHFYAEPDrgwAWQVpIIELPQAQFVL-MSATL 177
                 78999999999998888......55555566669********999757889999889997766665.69996 PP

>> RecO_N  Recombination protein O N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.3e-05     0.034       9      43 ..     170     204 ..     165     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.3e-05
                 EEEEEEEETTSEEEEEEEETT.EEEEEEEET-..T CS
      RecO_N   9 iVLksrkygEsdlivtlfTrehGkvsalargarks 43 
                 +VL s  +g++++ v+ +Tr  G+ +a++r+a ++
  KIR65994.1 170 FVLMSATLGDTSRFVDDLTRRTGRPTAVVRSAERP 204
                 7999****************************887 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.3e-05     0.085      46      82 ..      44      80 ..       4      89 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.3e-05
   IstB_IS21 46 kkenivllGpsGvGKshlaialgveavraglsvlfvr 82
                + +n+++  p+G GKs +aia   +a +++  ++++ 
  KIR65994.1 44 SGANVIMNTPTGSGKSLVAIAAHFAALADDRTTFYTA 80
                578************************9999999975 PP

>> DUF3638  Protein of unknown function (DUF3638)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00012      0.32      33      91 ..      38      96 ..      26     102 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00012
     DUF3638 33 emispssgensvlQLnmGeGKssvIvPivaaaladgkkLvrvivlkpllkqmaqlLvsk 91
                ++i+  sg n ++    G GKs v +   +aalad+++   +   k+l+++ + +L + 
  KIR65994.1 38 AVIEIVSGANVIMNTPTGSGKSLVAIAAHFAALADDRTTFYTAPIKALVSEKFFALCEV 96
                45666689*****************************9999999999999988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.50
# Mc/sec: 5058.92
//
Query:       KIR65995.1  [L=238]
Description: tRNA (guanine-N7)-methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-49  166.8   0.0    3.5e-49  166.6   0.0    1.0  1  Methyltransf_4   Putative methyltransferase
    5.7e-05   23.7   0.0     0.0001   22.9   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
     0.0016   18.3   0.0     0.0023   17.7   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
     0.0027   18.3   0.0     0.0062   17.2   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
     0.0033   18.1   0.0      0.021   15.6   0.0    2.0  2  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
      0.024   15.7   0.1      0.086   13.9   0.0    1.9  1  Methyltransf_24  Methyltransferase domain
       0.15   11.9   0.0       0.39   10.6   0.0    1.6  1  NIR_SIR_ferr     Nitrite/Sulfite reductase ferredoxin-like ha


Domain annotation for each model (and alignments):
>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.6   0.0   1.4e-52   3.5e-49       2     173 .]      67     233 ..      66     233 .. 0.97

  Alignments for each domain:
  == domain 1  score: 166.6 bits;  conditional E-value: 1.4e-52
                     -EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHCS-TTSEEEEEEES-----SGGGGGGSTTS CS
  Methyltransf_4   2 apvvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllelledgslekifilFPDPwfKkrhhKrRllq 96 
                     ap+vleiG+G+G+++ a+A ++P  ++l++E++++++a++l  +e+l+l N+r+ rgdal+++ ++l+dgsl+ ++++FPDPw+K rhhKrR+++
      KIR65995.1  67 APIVLEIGSGMGDATAAMAAADPGRDYLAVEVHTPGIANLLGLVERLGLGNVRVARGDALDLV-RALPDGSLDAVHVFFPDPWPKSRHHKRRIIS 160
                     79*********************************************************8877.99***************************** PP

                     HHHHHHHHHHEEEEEEEEEEESHHHHHHHHHHHHHCSTTEEESSCCCSCCTCHCHHCCCSSTTCCCCCCTTSS-EEE CS
  Methyltransf_4  97 pellkelarvLkkgGvlelaTDveeyaeemlkvleeeplferlskeeeleeeplsvlriatkyeqkvqskgkeiyel 173
                     p+ ++ l ++L +gG l+ aTD+ eyae m + l + p ++ ++    ++++p+  +r++tk+e+++ ++g+++++l
      KIR65995.1 161 PTHVALLRSRLTPGGTLHCATDWAEYAESMRETLTADPGLVDVHGG--YAPRPA--HRPVTKFERRALTAGRPVFDL 233
                     ****************************************988776..888888..9****************9985 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0     4e-08    0.0001       1      72 [.      70     144 ..      70     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBS..SSTTTEEEEEEES CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlp..fedgsfDlvvssg 72 
                      vL++G G G+ t+a+a++ +  ++++v++    +++    +e+ gl nv++ +gda dl   ++dgs D+v++++
       KIR65995.1  70 VLEIGSGMGDATAAMAAADPGRDYLAVEVHTPGIANLLGLVERLGLgNVRVARGDALDLVraLPDGSLDAVHVFF 144
                      9***************99746*********************9999************95347********9964 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   8.9e-07    0.0023       7     125 ..      70     193 ..      65     212 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 8.9e-07
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsn................... 81 
                      vl++G+G G+ t ++a  + p+ ++  ++     i       ++lgl nv++ +gd+ +l  +l d + D ++ +                   
       KIR65995.1  70 VLEIGSGMGDATAAMA-AADPGRDYLAVEVHTPGIANLLGLVERLGLGNVRVARGDALDLVRALPDGSLDAVHVFfpdpwpksrhhkrriispt 162
                      9***************.8889999***********************************99789*******99885555544444444444444 PP

  Methyltransf_31  82 ..evlnaladpdkileeiervlkpggilliedprllaelpakveee 125
                        +              + + l+pgg l +++ +  ae++++++e+
       KIR65995.1 163 hvA-------------LLRSRLTPGGTLHCATDW--AEYAESMRET 193
                      440.............444444555554444444..4444444444 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.4e-06    0.0062       1      67 [.      71     142 ..      71     154 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.4e-06
                      EEET-TTSHHHHHHH..HTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCT..SS-TT-EEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaeala..krgarvvgvDlskemlklakekaseegl.kvefvvadaekl..pfednsfDlvvs 67 
                      L++G+G G  ++a+a  + g+++++v++ +  ++     +++ gl +v++ ++da +l   ++d+s D+v +
       KIR65995.1  71 LEIGSGMGDATAAMAaaDPGRDYLAVEVHTPGIANLLGLVERLGLgNVRVARGDALDLvrALPDGSLDAVHV 142
                      89*************76777*************888888888888************8767********976 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   8.1e-06     0.021       1      73 [.      71     143 ..      71     145 .. 0.92
   2 ?   -0.2   0.0      0.67   1.7e+03      74      94 ..     175     195 ..     167     198 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8.1e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvas 73 
                      LeiG+G G+ ++a++++ p+ +y++v++++  i++      + +  n+ + + +aldl    + +s D+v+++
       KIR65995.1  71 LEIGSGMGDATAAMAAADPGRDYLAVEVHTPGIANLLGLVERLGLGNVRVARGDALDLVRALPDGSLDAVHVF 143
                      8********************************9999999999999999999999999888888999999875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.67
  Methyltransf_12  74 nvlhhlkdirevldnirklLk 94 
                      ++lh+  d++e+ +++r+ L+
       KIR65995.1 175 GTLHCATDWAEYAESMRETLT 195
                      578888899999888888887 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.4e-05     0.086       1     103 [.      71     179 ..      71     180 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.4e-05
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdh.dpgaeeaaalareaglddrvrlikadseealaslaagsiDllfiDgghaa...eavledl.. 88 
                      +EiG+  G  t+++  a+ + g+  ++av+   pg ++   l++++gl + vr+ ++d+ ++++ l +gs D +++ ++      ++ ++ +  
       KIR65995.1  71 LEIGSGMGDATAAM--AAADPGR-DYLAVEVhTPGIANLLGLVERLGLGN-VRVARGDALDLVRALPDGSLDAVHVFFPDPWpksRHHKRRIis 160
                      7***5555555555..5566666.57788762565667777777888776.****************999998887553222222222222112 PP

  Methyltransf_24  89 ....eallprlapggvvlf 103
                           +l+ rl+pgg++++
       KIR65995.1 161 pthvALLRSRLTPGGTLHC 179
                      2222666677888887776 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00015      0.39      13      37 ..      21      45 ..      14      49 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
  NIR_SIR_ferr 13 rlrvpnGritaeqlraladiaekyg 37
                  ++++  Gr+t  ql+al +++ +yg
    KIR65995.1 21 TFHPRRGRMTGRQLDALDRLWSAYG 45
                  677789******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1713.72
//
Query:       KIR65996.1  [L=237]
Description: glyoxalase/bleomycin resistance protein/dioxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-39  135.3   7.5      1e-20   74.5   0.4    2.0  2  Glyoxalase_6  Glyoxalase-like domain
    0.00095   19.4   0.0        0.5   10.6   0.0    2.4  2  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge


Domain annotation for each model (and alignments):
>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.4   1.2e-24     1e-20       2     107 .]       9     115 ..       8     115 .. 0.89
   2 !   64.4   1.7   1.6e-21   1.4e-17       4     106 ..     131     232 ..     130     233 .. 0.85

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 1.2e-24
  Glyoxalase_6   2 vvldaadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpe..paknrvHldlavedld...aevarlvalGArvlreprdgthg 93 
                   v++da d+ +la+Fwa +lg ev+ ++       +  p ++++++l f + p+  ++ nr+Hl+l+ +d++   + v  ++ lG+ +l+  + +++g
    KIR65996.1   9 VTFDAHDAVRLARFWAGMLGREVTGDA-----RGALLPGDDTQPSLRFVPSPTekAGANRLHLHLTSTDPAdqqRLVTTALGLGGGHLDVGQRPEEG 100
                   89*************************.....4556677788899*******9999999******88555333399*******************99 PP

  Glyoxalase_6  94 r.vlaDPeGneFcvv 107
                     vlaDPeGneFcv+
    KIR65996.1 101 HiVLADPEGNEFCVI 115
                   9************96 PP

  == domain 2  score: 64.4 bits;  conditional E-value: 1.6e-21
  Glyoxalase_6   4 ldaadpaalaaFwaaalgweveree...aaledpegvgpaaedaatllfqrvpepaknrvHldlav..edldaevarlvalGArvlreprdgthgrv 95 
                   l+++  +++  Fw++al+w++++++   +a+++p+g+++ a+++++++ +    +a+nr ++dla    d +aev+rlvalGA++l++  dg+   v
    KIR65996.1 131 LACDGTREVGLFWSRALDWPLVWDQdqeTAIQSPHGGTKVAWGGPPVAPK----TARNRQRFDLAPpaGDQQAEVDRLVALGATRLETGADGAV--V 221
                   68999********************7777778888877777777777655....5556899***77669999****************999863..* PP

  Glyoxalase_6  96 laDPeGneFcv 106
                   laDP+GneF++
    KIR65996.1 222 LADPDGNEFTL 232
                   *********97 PP

>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0011        10      14     127 ..      18     113 ..       8     114 .. 0.73
   2 !   10.6   0.0   5.5e-05       0.5      18     127 ..     142     231 ..     140     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSE..EEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGEEEEEEECHHC CS
  Glyoxalase  14 ksldFYtkvLGfklvkktdnteeteglriaffhagggh..ielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvkvvaepgrhyf 110
                 + ++F+++ LG +++ +           +a +  ++++  + +v  ++++ +a++         h++++ +d  d+ + +  +   g+   ++ +r   
  KIR65996.1  18 RLARFWAGMLGREVTGDAR---------GALLPGDDTQpsLRFVPSPTEKAGANR--------LHLHLTSTDPADQQRLVTTALGLGGGHLDVGQRPEE 99 
                 5567777777766666666.........444444444400444444444555555........59****************************999999 PP

                 TEEEEEEEEETTSEEEE CS
  Glyoxalase 111 galysfyfrDpdGille 127
                 g+++     Dp G+++ 
  KIR65996.1 100 GHIV---LADPEGNEFC 113
                 ***9...9******996 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 5.5e-05
                 HHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGEEEEEEECHHCTEEEEE CS
  Glyoxalase  18 FYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvkvvaepgrhyfgalysf 116
                 F+ ++L++ lv++ d        ++++   gg+++++ + +++++ a               +a    d+ + +drl + g    + +++   ga++  
  KIR65996.1 142 FWSRALDWPLVWDQD------QETAIQSPHGGTKVAWGGPPVAPKTARNR--------QRFDLAPPAGDQQAEVDRLVALG---ATRLETGADGAVV-- 221
                 99*************......77777888888888888777655555544........256688889999***********...8888889999999.. PP

                 EEEETTSEEEE CS
  Glyoxalase 117 yfrDpdGille 127
                    DpdG+++ 
  KIR65996.1 222 -LADPDGNEFT 231
                 .99*****985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1668.65
//
Query:       KIR65997.1  [L=237]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-10   41.2   0.1    2.6e-10   40.3   0.1    1.4  1  TetR_C_1  Tetracyclin repressor-like, C-terminal domain
    2.6e-08   33.5   0.0    2.6e-08   33.5   0.0    2.1  3  TetR_N    Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> TetR_C_1  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.1   2.9e-14   2.6e-10       2     143 ..      74     223 ..      73     225 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 2.9e-14
                 -STTS-HHHHHHHHHHHHHHHHHTSTTHHHHHHT-SS--HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHSTT--STT-HHHHH CS
    TetR_C_1   2 PdegedWrerlrelarslrrallrhrdlarlfagtprlspnelrgmErlLrllrdaGlsdedavyalslisnFvvGavleeqsgledaeeraeqeavle 100
                 Pd+g  W+ ++r+   + rr++lrh++  +   ++    p  l+ +++l   + ++G+s++ + +++ ++ n v G+  e  +  +++++ + ++++++
  KIR65997.1  74 PDPGLHWKGAVRQRVLAARRVVLRHPWARQAIESRTSRTPTVLAHLDSLAGAFLAGGFSADLTHHVMHALGNRVWGFSPELFN-APEPAAPRPPAPDEQ 171
                 99*****************************999999*****************************************76665.555556666666655 PP

                 HH--TT...T-HH.HHHHHH.......HHT--.-HHHHHHHHHHHHHHHHHH CS
    TetR_C_1 101 ealepg...eypl.laealelae....iltse.dsdaaFefGLellldGlea 143
                 ea+++    ++p+ la a +++     +++ + d++  Fef+L+llldG e+
  KIR65997.1 172 EATAREfarRFPHiLAIATAATGgdlaAVGQGcDEQFEFEFALDLLLDGAER 223
                 55555333569985333333221111123322255556899********887 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   2.9e-12   2.6e-08       2      45 ..      18      61 ..      17      63 .. 0.96
   2 ?   -3.3   0.3      0.94   8.4e+03       3      12 ..     172     181 ..     172     181 .. 0.81
   3 ?   -2.9   0.0       0.7   6.3e+03       1       9 [.     217     225 ..     217     227 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 2.9e-12
                HHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHH CS
      TetR_N  2 ldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLle 45
                l aA+ l  e G++a+++r++A+ +Gv + alY++ ++KeeLl+
  KIR65997.1 18 LRAAVSLADEAGIAAVSMRRLAQDLGVVPMALYKHVADKEELLD 61
                89****************************************97 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.94
                 HHHHHHHHHH CS
      TetR_N   3 daArelfaer 12 
                 +a+++ fa+r
  KIR65997.1 172 EATAREFARR 181
                 6899999976 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.7
                 HHHHHHHHH CS
      TetR_N   1 IldaArelf 9  
                 +ld+A++l 
  KIR65997.1 217 LLDGAERLH 225
                 7999*9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1895.72
//
Query:       KIR65998.1  [L=110]
Description: monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-19   68.0   0.1    7.8e-19   67.6   0.1    1.2  1  ABM       Antibiotic biosynthesis monooxygenase


Domain annotation for each model (and alignments):
>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.1   4.4e-23   7.8e-19       2      72 ..       3      72 ..       2      77 .. 0.94

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 4.4e-23
                EEEEEEEEESTTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEETSTTEEEEEEEESSHHHHHHHHTSHHH CS
         ABM  2 viviaeirvkpgqaeafldafaeavesllaeepGclgyellrstedpdevvvieeWeseaaleahlksphf 72
                v+ i+ i v++g+ e+++++fa++++++ +  pG+lg+ellr+  ++++++v+++Wese+a++++ + p+ 
  KIR65998.1  3 VVKINAIDVPEGAGEELERRFAARAGAV-EGSPGFLGFELLRPVGGETRYFVYTRWESEEAYQNWAAGPAR 72
                6789**********************99.9************************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       171  (0.00953762); expected 358.6 (0.02)
Passed bias filter:                      142  (0.00792013); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 926.42
//
Query:       KIR65999.1  [L=265]
Description: exodeoxyribonuclease III [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-22   78.7   1.0    5.4e-22   78.5   1.0    1.1  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
      0.066   13.1   0.0       0.47   10.3   0.0    2.1  1  Exo_endo_phos_2  Endonuclease-reverse transcriptase


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   1.0     6e-26   5.4e-22       1     233 []       4     249 ..       4     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 6e-26
                    EEEEESTGCHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEETSS CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   1 ltwNvngqaspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllalggflgasstsptgggggggnggavlsrfpltslfrrtfiefnd 96 
                    +twNvn+         +r  rl+d+l+++ +Dv++LQE+++ +++++ +   + g+  as++       g+ ng+a+lsr  l  + +  + e ++
     KIR65999.1   4 ATWNVNSV-------KARLPRLLDWLATTAPDVVCLQETKCPDGAFPVAEVGELGYTVASHS------DGRWNGVAILSRVGLADVTVGFPGEPGF 86 
                    7******5.......456778**************************999988666666554......7**************8886665555555 PP

                    SSGCEEEEEEEEEEEEEEE......CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH.......... CS
                    xxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......... RF
  Exo_endo_phos  97 lvaalrreplaakleqlni......ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap.......... 176
                    +  + r    + +++ ++       + + d++++ +l   a l+++++  +  g p+ v+GDfN++p+d d+ +++    +++ +p          
     KIR65999.1  87 PEPEARAVSATCDGLRVWSvyvpngRAPDDPHYAYKLAWFAALRDALEQELTGGLPLAVCGDFNVAPTDADVWDPALFVTSTHVTPaeraalaalr 182
                    555555555555555555599*****************************************************9999999999998877776665 PP

                    ..H...........SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    ..x...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 177 ..v...........glyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrrealtlSDH 233
                      +            +  + + +++    ++ g+r+D ++as  +a+ ++  + + +a+    +  +SDH
     KIR65999.1 183 dlGladvvptpmkgPHPFTYWDYRAGMFHQNKGMRIDLVYASAPFARAVRAAYVDREAR---KGKGPSDH 249
                    55166677889999****************************86666655544333333...56788888 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   5.2e-05      0.47       2     118 ..     102     252 ..     101     253 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.2e-05
  Exo_endo_phos_2   2 liisvYippsd............elenlestlekllselkspkiiilGDfNakhpl...Wgs....edtdssargeeLiefleehslsll.... 72 
                      ++ svY+p+ +            ++  l ++le+ l+     ++ ++GDfN+  ++   W+     ++t+++  ++  + +l + +l  +    
       KIR65999.1 102 RVWSVYVPNGRapddphyayklaWFAALRDALEQELTGGL--PLAVCGDFNVAPTDadvWDPalfvTSTHVTPAERAALAALRDLGLADVvptp 193
                      6789999999999999777666666666666666666555..9********8654322266655554444455555555555555555333332 PP

  Exo_endo_phos_2  73 nllksgptfkssng.......sstiDltltsdnlals......kleleeedlgSDHrpi 118
                       + + + t+++ ++          iDl+ +s++ a+         e  + +  SDH pi
       KIR65999.1 194 MKGPHPFTYWDYRAgmfhqnkGMRIDLVYASAPFARAvraayvDREARKGKGPSDHAPI 252
                      33334577777777777776567788888888888877777765666667777888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2088.55
//
Query:       KIR66000.1  [L=306]
Description: proteasome protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-47  161.0   0.0    5.3e-47  160.6   0.0    1.1  1  PAC2      PAC2 family


Domain annotation for each model (and alignments):
>> PAC2  PAC2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.6   0.0     3e-51   5.3e-47       2     212 ..      26     242 ..      25     243 .. 0.95

  Alignments for each domain:
  == domain 1  score: 160.6 bits;  conditional E-value: 3e-51
                 EEESSCGGGHHHHHHHHHHHHTTEEEEEEEEHCCHSBCCCC.SEEEEETT..EEE-SEEE...EEETTT.SEEEEEEEE-HSCHHHHHHHHHHHHHHHT CS
        PAC2   2 ilGfpgiGnVgqlavdlLiesleaekvgeidsdyllpfvgprpvvlveeg..relepprl...yakdsgsrdllvlqgrepilqyeefakalldwaeel 95 
                 ++Gf+++G++  la + L +sl+a++v+++d d+l++++++rp +++ e+  ++++ p+l   +++d++++++l+l g+ep+lq+e+f+ a+  +a +l
  KIR66000.1  26 LTGFVDAGSATRLAREQLFSSLDARPVASFDVDQLYDYRSRRPPMTFVEDhwEDYDAPKLevhLLHDDDETPFLLLSGPEPDLQWERFVAAVGGLAARL 124
                 79***************************************9999999999*********765444778****************************** PP

                 TESEEEEEEEEEESS-ES..TTS-.EEEEEESSHHHHHHHH..CT-CEEEEHHHHHHHHHHHHTT-EEEEEEEEEECCC...--HHHHHHHHHHHHHHH CS
        PAC2  96 gvkevvvLggldageradvphtrpekvtgaatdeelleele..eseyggivgitglLlsaakergipavgllaevphyl...pdPkaaaalleflskll 189
                 +v+ +v L++++    + vphtrp++vt++at++el++++e   ++ ++++++ +lL+ +++e+g +a+g++a+vphy+   ++P+aa +ll  +s+ +
  KIR66000.1 125 DVRLTVGLNSIP----MAVPHTRPTGVTAHATRRELISGYEpwLQRVQVPGSVGHLLEFRLGEQGRDALGFAAHVPHYVaqaEYPAAAEVLLASVSRST 219
                 ************....**********************99756559*********************************9878**************** PP

                 T---HCHHHHHHHHHHHHHHHHH CS
        PAC2 190 glevdtedLeedaeeleeqleel 212
                 gl ++ + L++ ae ++ +++++
  KIR66000.1 220 GLLLPRDGLRSAAEVVRVEIDRQ 242
                 ***************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 2045.38
//
Query:       KIR66001.1  [L=333]
Description: peptidase M23 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2281.28
//
Query:       KIR66002.1  [L=272]
Description: hypothetical protein TK50_12165 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-12   46.3   0.6    8.7e-12   45.2   0.6    1.4  1  EcsC      EcsC protein family
    0.00057   19.6   2.6     0.0012   18.6   2.6    1.6  1  DUF697    Domain of unknown function (DUF697)


Domain annotation for each model (and alignments):
>> EcsC  EcsC protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.6   9.8e-16   8.7e-12      84     241 ..     102     260 ..      89     261 .. 0.84

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 9.8e-16
        EcsC  84 delaaklakkrklaaaaeGagtGagGlllllaDiPlllglklkvlqeiAliYGydlkekeerlfiLkvlqlasa.ddeerkalleelskadeeseqeqv 181
                 +ela++  ++  + a ++Ga+ Ga Gl   ++D+ +l   + +++ +iA+  G d+ +   r+  L vlq  +   +  r al  +  +   +     +
  KIR66002.1 102 EELAEQAVRRFVNRARLSGAVSGAAGLPGAVIDVGVLAWTQARMVLHIAAAHGIDP-THPDRATDLLVLQKVHKvAETARLALGVAAGRE--RAG---A 194
                 6778888888889999****************************************.566788899999988884555555554444444..222...1 PP

        EcsC 182 ......esqesgwleelikeiakelrdqvdkkkllqliPviGavvGalaNysfikdvaeaAkmlyr 241
                       ++   +++ +l   +a+  ++  +k+ +++ iP++ +++G +aN s +kd+ae  ++lyr
  KIR66002.1 195 lfgsggQAALGKVMLRLGVRLAQMAGVRAAKRIFAKVIPGAAIILGTWANSSATKDLAERSRQLYR 260
                 34444588888999999999*********************************************9 PP

>> DUF697  Domain of unknown function (DUF697)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   2.6   1.3e-07    0.0012      19      78 ..     106     167 ..      94     257 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.3e-07
      DUF697  19 dqeakkliekyawekAlvvav.sPlalvDllavaavnlrlirelaelYgielgyega.qrLa 78 
                 +q  ++ ++++    A+  a+  P a++D+ + a++++r++ ++a  +gi ++   +  +L+
  KIR66002.1 106 EQAVRRFVNRARLSGAVSGAAgLPGAVIDVGVLAWTQARMVLHIAAAHGIDPTHPDRaTDLL 167
                 56667778877777777655426****************************99765413432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1868.05
//
Query:       KIR66003.1  [L=282]
Description: GDSL family lipase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.8e-19   68.6   0.2    1.5e-18   67.8   0.2    1.4  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
    1.1e-12   48.3   0.0    1.9e-12   47.6   0.0    1.3  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.2   1.6e-22   1.5e-18       1     177 [.      45     268 ..      45     270 .. 0.80

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 1.6e-22
                    EEESHHHHTCTTB..............CCHCHHCCCCCCCHHHTT..-EEEEE.EEHCCH-H..HHHHHHHHCTGGG-TSEEEEE--CCCCCTT-- CS
  Lipase_GDSL_2   1 alGDSiTaGygad..............gggrsypaylarllaarl..gldvvnnlgvsGattallrllerlrdllrlkpdlvtiliGtNDlgrgvp 80 
                    alGDSi+ G+g++              +g r +++y +rll ++   + + +n  + +Ga+   ++l+++ +++ r ++d+vt+liG+ND++r++ 
     KIR66003.1  45 ALGDSISTGFGSClmlsscernswstgDGLRVDSHY-QRLLDRNPklRGAAHN-HAKPGARA--AALAGQAEAAVRDRADYVTVLIGANDACRDDV 136
                    79************************9999999999.9999999976667777.********..**************************777777 PP

                    HHHHHHH.....HHHHHHHHCCC...GEEE...............................CEEEEE-TTT-TTSTCC.HHHHHHHHHHHHHHHHH CS
  Lipase_GDSL_2  81 aaaaaand...nleelidalraaapgaril...............................vlgplpptpeaaadare.lnaviaaynealrevaa 141
                    aa + a++   +++e ++ lr+  p+ar+l                                l++  +t +a+  +r   +++i+ayn+ l+++++
     KIR66003.1 137 AAMTPAATfrkQVDEGLRVLRTGRPKARVLvvsvpdlyrlwevghtdsravrawghgvcpaLLANATSTAPADVTRRAkVRDRIDAYNAQLKSACR 232
                    77777776555588888899999***********************************99944555555555555555589*************** PP

                    HCT-EE.E-HHHHHHHCCCCCGGBBTTS.SSB-HHHH CS
  Lipase_GDSL_2 142 eegvpf.vDlhdaladsgerladlladdglHPnaaGy 177
                    ++g ++  D   + + +      +  d  +HPn aG+
     KIR66003.1 233 AYGSRCrYDGGAVHRVRFTLDLVNALDW-FHPNVAGQ 268
                    *766541344222222222222222222.******97 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   2.1e-16   1.9e-12       2     197 ..      44     272 ..      43     274 .. 0.73

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 2.1e-16
                  EEEESHHHHTT....................THHHHHHHCCCCEECCCTTC.GCEEEEEEECTTHHHHHHHCCHECTTTECHHHHHCTTSEEEEE--C CS
                  xxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL   2 vafGDSltdGd....................gaatlntiqlktpknlnefdlaldrianignkgasdnelqqllnkyplkseqlkalhpdlviislGt 79 
                  +a+GDS++ G+                     + +     l+++++l++   a  + a+ g+++a +  +++     +         ++d+v++ +G+
   KIR66003.1  44 AALGDSISTGFgsclmlsscernswstgdglRVDSHYQRLLDRNPKLRG---AAHNHAKPGARAAALAGQAEAA---V-------RDRADYVTVLIGA 128
                  58*******8877777777444433333333444444444444444444...4556666666666666666666...2.......44589******** PP

                  TCC-EECSSCTTTCEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCH............................CTCCCCHCCHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................xxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  80 NDsnlgkkstdaakkeaeeyiknlreaikelkeegapkaivvlvsppglgp............................qeekdakklgekgnefvge 149
                  ND    +++  aa+++a+ ++k+++e ++ l+  g pka v++vs+p+l++                            +      + + k++++++ 
   KIR66003.1 129 NDA---CRDDVAAMTPAATFRKQVDEGLRVLR-TGRPKARVLVVSVPDLYRlwevghtdsravrawghgvcpallanatSTAPADVTRRAKVRDRIDA 222
                  ***...99999*********************.788****************************************9986666667778899999999 PP

                  HHHHHHHHHH..........HCTEEEECHHHHHHHTHCCGCHCHTSSSB-HHHHHHHH CS
                  xxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL 150 ynqrlndlae..........kdgfavvDlydelqglsgieqlkaDglHpsekgyekla 197
                  yn +l+++++          ++   v    d    l        D +Hp+ +g+  la
   KIR66003.1 223 YNAQLKSACRaygsrcrydgGAVHRVRFTLDLVNAL--------DWFHPNVAGQGRLA 272
                  999999999977777775442222222223333334........77788888876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2000.23
//
Query:       KIR66004.1  [L=87]
Description: hypothetical protein TK50_12175 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00023   21.1   5.8    0.00025   21.1   5.8    1.1  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
     0.0065   16.5  10.1     0.0081   16.2  10.1    1.1  1  Sensor           Putative sensor
  ------ inclusion threshold ------
      0.016   14.5   1.1      0.018   14.4   1.1    1.2  1  DUF4191          Domain of unknown function (DUF4191)
      0.053   12.3   1.1      0.054   12.3   1.1    1.0  1  DUF2207          Predicted membrane protein (DUF2207)
      0.058   13.6   3.4      0.078   13.2   3.4    1.2  1  VirB3            Type IV secretory pathway, VirB3-like protei
       0.16   11.8   2.9       0.16   11.8   2.9    1.1  1  FA_desaturase    Fatty acid desaturase


Domain annotation for each model (and alignments):
>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   5.8   8.3e-08   0.00025      42      94 ..      22      75 ..       5      85 .. 0.63

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 8.3e-08
  Phage_holin_3_6 42 aagvlallalllllvalalalaa.lwlaalivaavllvlagvlalvglk.klkka 94
                     + +vla ++l++++++++la+ +   ++  +v+av++v+a+v ++v+ + +++++
       KIR66004.1 22 LRLVLAGFGLVTMVIFAVLAV-WaGVVWLGVVCAVFAVVAAVDLVVIQRrRAARR 75
                     557888888888888888777.445555566777777777775555444144443 PP

>> Sensor  Putative sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2  10.1   2.7e-06    0.0081       4      58 ..      22      76 ..      19      84 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.7e-06
      Sensor  4 lglplgvaafvllvtglslglgllvllvGlplLalalllarglaaveRrrarlll 58
                l l+l+ + +v +v+ ++l +   v+++G++  + a+++a+ l  ++Rrra++  
  KIR66004.1 22 LRLVLAGFGLVTMVIFAVLAVWAGVVWLGVVCAVFAVVAAVDLVVIQRRRAARRR 76
                67899999*******************************************9754 PP

>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.1     6e-06     0.018      25      73 ..      22      71 ..       4      84 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6e-06
     DUF4191 25 llwlllaaflvvvvvfvvlglllgslilllilgillgllva.livltrra 73
                l  +l+++ lv++v+f vl +++g ++l ++ ++++ + ++ l+v++rr 
  KIR66004.1 22 LRLVLAGFGLVTMVIFAVLAVWAGVVWLGVVCAVFAVVAAVdLVVIQRRR 71
                55677888899999999999998778888888887554443155555553 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.1   1.8e-05     0.054     384     433 ..      18      70 ..       7      82 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.8e-05
     DUF2207 384 salglgliilglilillallllvll...lvfllilllillliaiivlllfsrl 433
                 sal+l l+++g+ l++++++++ ++   +v+l++++ +++++a++ l++++r+
  KIR66004.1  18 SALNLRLVLAGFGLVTMVIFAVLAVwagVVWLGVVCAVFAVVAAVDLVVIQRR 70 
                 55555566666666655555554433336666666666666666666665544 PP

>> VirB3  Type IV secretory pathway, VirB3-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   3.4   2.6e-05     0.078      20      60 ..      22      63 ..      18      80 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.6e-05
       VirB3 20 lelvllnllvsvilflvglslwillllv.plhlvlrliakrD 60
                l lvl+ +++++++++++l++w+ ++++ ++ +v+ ++a+ D
  KIR66004.1 22 LRLVLAGFGLVTMVIFAVLAVWAGVVWLgVVCAVFAVVAAVD 63
                6789999999999999999**999999977777777777665 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.9   5.4e-05      0.16     135     179 ..      17      62 ..       1      78 [. 0.55

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.4e-05
  FA_desaturase 135 wrllawlllllaw.lglwlalllllglalllwlvplllllfllalv 179
                    +  l ++l+l+++ l++ + +++l+ +a+++wl +++++++++a v
     KIR66004.1  17 YSALNLRLVLAGFgLVTMVIFAVLAVWAGVVWLGVVCAVFAVVAAV 62 
                    3333333333333333333333333333338888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1091  (0.0608511); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 609.51
//
Query:       KIR66005.1  [L=470]
Description: succinate-semialdehyde dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.4e-142  475.5   0.1   1.5e-142  475.4   0.1    1.0  1  Aldedh    Aldehyde dehydrogenase family
     0.0035   16.4   0.2      0.013   14.6   0.2    1.7  1  LuxC      Acyl-CoA reductase (LuxC)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  475.4   0.1  1.7e-146  1.5e-142       9     462 .]       3     454 ..       1     454 [. 0.98

  Alignments for each domain:
  == domain 1  score: 475.4 bits;  conditional E-value: 1.7e-146
                 EEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH. CS
      Aldedh   9 ievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelaek. 106
                 i+++nPatg+v++++  ++ +++daa+++A  af+  +++++++R++ L +aadll ++++e a+l+t+e+Gk++a a+aev+++++ +r+ya++ae+ 
  KIR66005.1   3 IATTNPATGQVLTSYDPMSDAQLDAAIERADLAFRDLRRTTVAQRGRWLTAAADLLDAERDETARLMTTEMGKTYAAAQAEVTKCASACRFYAAHAERm 101
                 7899**********************************************************************************************6 PP

                 HSEEEEEEC..TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH- CS
      Aldedh 107 legevlpss..egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealveh 203
                 l++e +  +  + ++a+vr++P+G v+a++PWNfPl  +++ +apal+aGNt +lK a+++p +al+l  lf++ag+ +g+++ +   gs++ + ++++
  KIR66005.1 102 LADEPADARavKAARAFVRYQPIGPVLAVMPWNFPLWQVMRFAAPALMAGNTGLLKHASNVPQTALYLEDLFRRAGFGEGAFTTLLV-GSDAVDRILSD 199
                 666766663589*************************************************************************99.9********** PP

                 TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TT CS
      Aldedh 204 pevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpl 302
                 p+v++ ++tGs   gr ia+ a+++lk+++lElGG +p++v+++aDld+a+e + ++ + n+GQ Ciaa+r++v+ +++d+f +++++ +++l+vgdp+
  KIR66005.1 200 PRVRAATLTGSEGAGRSIAQIAGRELKKTVLELGGSDPFVVMPSADLDRAAEVATTARCQNNGQSCIAAKRFIVHTDVFDAFAQRFAANMAALRVGDPM 298
                 *************************************************************************************************** PP

                 STT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEE CS
      Aldedh 303 dedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagv 401
                 d++tdvGPl+se+ +++++++v +a+e+ga++l+Gg   e+    g+f+ Ptv+++++p+mr++ eE+FGPV+ ++++++ +ea+e+aN t +GL+a  
  KIR66005.1 299 DPATDVGPLASERGRDEIDAQVRDAVEQGATVLCGG---EKPAGPGWFYPPTVVTDLRPEMRMWSEEVFGPVAGLFRVSSYAEAVEVANGTAFGLGANA 394
                 ************************************...67789******************************************************* PP

                 E-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 402 ftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 +t+d+++ er+a +l+aGnv +N +tt+ +e  pfgGvk+Sg+Gre ++ g++e++++ktv
  KIR66005.1 395 WTTDPQEQERFATDLDAGNVFVNGMTTSFPEL-PFGGVKNSGYGRELSALGMREFCNTKTV 454
                 *************************9999999.**************************98 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.2   1.5e-06     0.013      81     265 ..     115     290 ..      98     301 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.5e-06
        LuxC  81 eksyekaqprglvlhvlsgNvpllpvmsil.qglLvknvnllkvSssdpflaaallksladvdenhtladslsvvyfksgdtkleeeiv.qnaDvvvaw 177
                 ++ + ++qp g vl v++ N pl  vm  +  +l+++n  llk  s+ p++a  l   + +   +     +l       g++++ + ++   + +    
  KIR66005.1 115 ARAFVRYQPIGPVLAVMPWNFPLWQVMRFAaPALMAGNTGLLKHASNVPQTALYLEDLFRRAGFGEGAFTTLL-----VGSDAVDRILSdPRVRAATLT 208
                 3689***********************875169999****************999999999888754444443.....367777777753345555667 PP

        LuxC 178 Ggeeaikaise..klkpgkqlikfGakvSfavvdkealeeealdkaaeraAkDiivfdQqAClspqvvfvekddkieidefaeaLaaaLe 265
                 G+e a ++i++    + +k +++ G    f v+ + a    +ld aae a +  +  + q+C++++   v +d     d fa++ aa+++
  KIR66005.1 209 GSEGAGRSIAQiaGRELKKTVLELGGSDPFVVMPS-A----DLDRAAEVATTARCQNNGQSCIAAKRFIVHTD---VFDAFAQRFAANMA 290
                 88888888877433455677888999888877654.4....58888888888899999999999999999977...88889998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3069.96
//
Query:       KIR66006.1  [L=320]
Description: 5,10-methylene tetrahydromethanopterin reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-44  151.9  10.1    3.1e-44  151.7  10.1    1.1  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.7  10.1   1.7e-48   3.1e-44      15     314 .]       8     292 ..       1     292 [. 0.91

  Alignments for each domain:
  == domain 1  score: 151.7 bits;  conditional E-value: 1.7e-48
  Bac_luciferase  15 lgaasaslrylvelaraaEelGfdavwvaehhggpgga....ldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhlsgGRfglgl 105
                     ++ +++ +++l+e + +aE++Gfda++ ++h ++++ +      a+++l+a+++aT ++ +g+   p+ ++hPa++Aq++ tL  +++GRf+  l
      KIR66006.1   8 ASHEQIHPARLLEAVIHAERAGFDAAMSSDHFSPWSARqgesGFAWSWLGAALQAT-NLPFGVVNAPGQRYHPAIIAQAIGTLGAMYPGRFWAAL 101
                     344457999****************************9****88***********9.6************************************* PP

  Bac_luciferase 106 gtggpaveerrfGv...dhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgpiP.vyvaaaspaglelaarhadglllagepp 196
                     gtg++ +e+   G+   ++d r arlrE v+v+r+l++geev+++G   +v++a l+ rp+q+  P ++ aa+s a++++ a++adgl+++++p 
      KIR66006.1 102 GTGEASNEHIT-GDpwpRKDVRNARLRECVDVIRALLAGEEVSHDGLV-TVDRAKLWTRPEQP--PaLIGAAVSVATARWCAQWADGLITVNAPT 192
                     ********655.8888999***************************99.***********877..889999************************ PP

  Bac_luciferase 197 eeaaelierlragaaeagrdpadirvgisltvivadteeeAraearaliagldfyaldsegagreaeaaeiqeeedanlwagaadavpdelvaat 291
                      +++e+i+ +r    + gr+p    + ++++v++a+ ++eA+a a + +              +  +    ++ e+a++++ + + vp + va+t
      KIR66006.1 193 GHLREMIDAYRD---AGGRGP----LHLQVHVSWAPEQAEAEAIAYDQW------------RSNVFAPPVCWDLETAEHFDVVSADVPMAKVAST 268
                     ***********8...888865....6899***************98888............2222234466999********************* PP

  Bac_luciferase 292 alvG.tpeqvaerlaayaeagvde 314
                     + v  + + ++ +l++y+e+g+d+
      KIR66006.1 269 VNVSaDLGRHVGWLQEYVELGFDQ 292
                     **887999*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2202.05
//
Query:       KIR66007.1  [L=524]
Description: sodium:proton antiporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-50  171.4  45.4    3.1e-50  171.1  45.4    1.0  1  Na_H_Exchanger  Sodium/hydrogen exchanger family


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1  45.4   1.7e-54   3.1e-50       2     379 ..       8     401 ..       7     403 .. 0.91

  Alignments for each domain:
  == domain 1  score: 171.1 bits;  conditional E-value: 1.7e-54
                     HHHHHHHHHHHHHHHHTTSXHHHHHHHHHHHHTTTTTS.....HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   2 vllillallvgllarrlklpeivgliiaGlllGpsglgliepseedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvliGl 96 
                     v+ +++a+l+ +lar+l+l  +++l+++Gl l  + +g+ +   +d+++++   l++ll+ a+le++   +r nl++illla+++v++t++++Gl
      KIR66007.1   8 VVFLAIATLGAALARKLGLLAPILLVVVGLALSFV-PGFPQVR-LDPDLVLVGILPPLLYVAALETSVPAFRLNLRPILLLAVGLVIFTAFAVGL 100
                     5566667777779*******************876.6645555.*************************************************** PP

                     HHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXHHHHHHHHHHHHH CS
  Na_H_Exchanger  97 llylllilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeaggetslllllliflvvavggl 191
                     +++l l++ +p++ +l++ga++++ d+v+++a+  ++  +p+r+ t+l+ges++nDa+a+vll v+  +    +g+ ++++ +++++lv+ +gg+
      KIR66007.1 101 VVHL-LLPAVPFAVCLALGAVVAPPDAVAATAVA-RRIGLPRRVVTILEGESLINDATALVLLRVATMAT---IGTSVGVGDVAWEVLVATGGGI 190
                     ***7.79***************************.******************************99998...********************** PP

                     HHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTTHHHH....HHHHHH...HHHHHHHHHHHHH CS
  Na_H_Exchanger 192 llglvigwllrlitrftdddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnklsek....lesfre...glfnplfFvlvGl 279
                     ++gl+  +++ ++ +++  d+ l  +++l+++++++++ae ++ sg++++++ Gl +++  +  + s+     + +f+    +l+++l+F+lvGl
      KIR66007.1 191 VMGLLGVVVFGFLHKRI-TDPLLDNAVSLIVPFAVVFAAEEIHASGVVAVVVTGLGIGHKMPLLM-SAAsrlqIGAFWRlvrFLLEGLVFLLVGL 283
                     ****************8.****************************************9999985.4444789999999**************** PP

                     HSX..HHHHHX....XHHHHHHHHHHHHHHHTHHHHHHHHHTTTX..........SSXH.HHHHHCCCCSS.BHHHHHHHHHHHHHH....XHHH CS
  Na_H_Exchanger 280 sld..lkvlnn....hlsvlilvllilvaillgrilavflllrll..........glsl.realiigfgglqrgavalalaalgpal....glla 353
                     +l   +           ++ ++  ++lv+++l+r+++ f++++l             +l +  ++ig++g  rg v+la+a+++p++      ++
      KIR66007.1 284 QLRevVR---DldepLGFLAAITGAVLVTVFLTRFVWLFPATYLArlvprvrqrdPAPLaKFPIVIGWAGM-RGVVTLAAALALPLTlaqdRPYP 374
                     ***4444...3555656666666777888899**********999999*999998444448999*******.***************88888888 PP

                     HTT.SSTTTCSTSXHHHHHHHHHHHHH CS
  Na_H_Exchanger 354 rel.yallivvvlftvlvqGlslkpll 379
                     r+l + l+++v+++t++ qG +l+++ 
      KIR66007.1 375 RQLfIWLAFAVIVVTLVGQGATLPAVA 401
                     8**********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1021  (0.0569468); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 4040.99
//
Query:       KIR66008.1  [L=85]
Description: zinc finger, UBP-type [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-11   45.0   5.8    1.5e-11   44.5   5.8    1.2  1  zf-UBP    Zn-finger in ubiquitin-hydrolases and other protein


Domain annotation for each model (and alignments):
>> zf-UBP  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   5.8   8.1e-16   1.5e-11       1      56 [.      20      82 ..      20      84 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 8.1e-16
                -TTTH--.SSEEE....ETTT--EEE-TTTT.-HHHHHHHHH---EEEETTT--..EEETTTT CS
      zf-UBP  1 CseCnsenknlWl....CLkCghvgCgrksn.ghalkHyeetrHplavdlstls..vycyscd 56
                C +C +  +  W+    CL+CghvgC+++s  +ha kH+ +++Hp++ +++ ++   +c+ ++
  KIR66008.1 20 CPDCVAVGNADWVhlrsCLTCGHVGCCDSSPyQHASKHFAASGHPVMRSIQPGEawRWCFVDE 82
                77888556677777799***********9988**********************655998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      158  (0.00881254); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 678.35
//
Query:       KIR66009.1  [L=873]
Description: glycosyl hydrolase family 5 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     8e-100  335.1   7.3    1.3e-99  334.5   7.3    1.3  1  Glyco_hydro_9  Glycosyl hydrolase family 9
    2.8e-29  101.8   1.5    1.2e-28   99.8   0.1    2.7  3  CelD_N         Cellulase N-terminal ig-like domain
    1.7e-25   89.3   8.1    6.4e-25   87.4   8.1    2.1  1  CBM_2          Cellulose binding domain
    1.1e-15   58.1   0.2    6.1e-15   55.7   0.0    2.3  3  CBM_4_9        Carbohydrate binding domain
  ------ inclusion threshold ------
      0.043   13.1   0.0        0.1   11.9   0.0    1.5  1  Pec_lyase      Pectic acid lyase
       0.17   12.2   0.5       0.73   10.1   0.3    2.2  2  CARDB          CARDB


Domain annotation for each model (and alignments):
>> Glyco_hydro_9  Glycosyl hydrolase family 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.5   7.3  4.3e-103   1.3e-99       1     410 [.     281     749 ..     281     750 .. 0.85

  Alignments for each domain:
  == domain 1  score: 334.5 bits;  conditional E-value: 4.3e-103
                    HHHHHHHHHHHHHHHB-BTTT.TT....-SBSS---BSTTT...............TCCCTS----SB--SSS--EEHHHHHHHHHHHHHHHHHCH CS
  Glyco_hydro_9   1 YaealkksllffeaqRsGklp.en....nrvaWrgdshlkd...............gkdagvdlsGGwyDAGDhvKyvvpmafsvttLlwayeefp 76 
                    Y+++ +++l+ff+ qRsG ++ +     +++a r+++h+                 + d ++d+ GGwyDAGDh+Kyvv++++++++Ll+++e+ +
     KIR66009.1 281 YDKLRSDALQFFYIQRSG-IAiDGdlvgEEYA-RAAGHVGVapnqgdtsvpcqpgvC-DYSLDVRGGWYDAGDHGKYVVNGGIATYQLLNTFERTK 373
                    999***************.76433567789**.********8887666666555422.358*********************************** PP

                    HHHHHT................T-HHHHHHHHHHHHHHHHHTE.....TCTTEEEEEES-HHHHHT--.....S-GGG--.---EEEEETTC--HH CS
  Glyco_hydro_9  77 eayeaa................gdleeildeikwgldyllkmh.....tkdgvlyvqvGdgdaDhklW.....gppedmdtprpvykvdesnpgtd 146
                    +a +a                 +   +ilde++w+l++ll+m+     + +g+++      ++  k+W      p+ d  +pr ++      p+t+
     KIR66009.1 374 TAATADagagladstlrvpergNAVPDILDEARWELEFLLRMQvpagkPLAGMAH-----HKIHDKNWtglplDPAAD-PQPRELH-----PPSTA 458
                    997544777777777777766568888***************6322223356666.....444445888665444333.3689999.....46*** PP

                    HHHHHHHHHHHHHHHHTT.T-HHHHHHHHHHHHHHHHHHHHH-.-.TT--TGTTTTTTS--SS.HHHHHHHHHHHHHHH--HHHHHHHHHCC.TTS CS
  Glyco_hydro_9 147 aaaetAAalAaasrvfkk.sdpayAaklleaAkklyafadkyr.kyadsiaeaagggfYnssd.kDellwAaawlykatkeasylddaksyyskea 239
                    a++++AA++A+++r+f + +d+a+A+++ +aAk++ya+a++++  ya++ ++  ggg Y+++d +De++wAaa+l+++t+ea+yl+d++++++++ 
     KIR66009.1 459 ATLNLAAVAAQCARLF-ApYDAAFATRCGTAAKTAYAAAKAHPaIYASP-TDGTGGGTYDDTDvSDEFYWAAAELFLTTGEAAYLTDLTASKHHT- 551
                    ****************.548********************999766554.4577889***8779************************9765443. PP

                    ST........BTTB-HHHHHHHHHHHHHHSHHCC............H.....HHH..HHHHHHHB-TTS-BE.....S-SSSHHHHHHHHHHHHHH CS
  Glyco_hydro_9 240 as.....ssfsWdnkvagaqlllagllslalkee........kakasieaaadky..kseaegyytpgglay.....lyewgslryvanaafllll 315
                     +     + f+W+  va+     +g l+la++++        +++as++aaad+y   ++ ++y    gl++      y wg + +++n+a++l +
     KIR66009.1 552 -GavfgdQGFGWQG-VAA-----LGRLDLATVPSglpavertRVRASVTAAADRYleIAAGQAY----GLPMpgdanSYFWGANGNITNNAVVLGT 636
                    .347998778****.888.....78888877777788888889************866888888....999999999******************* PP

                    HHHTS.S..HHHHHHHHHHHHHHTTTTTSSBSBTTSSSSB-S--B-HHHHT-...S-SS--TT-B-S---.................TTS-----T CS
  Glyco_hydro_9 316 aadltgdakeyrdfaksqldyllGrNplgqsYvvGygekspknphhraasgs...pnpnvlpGalvgGPn.................andsyvDdr 391
                    a dlt dak yrd+a ++ dyllGrN+l++sYv+G+ge++++n h+r+++++   + pn++ G l+gG n                 +  +yvDd+
     KIR66009.1 637 AFDLTRDAK-YRDGAVQAADYLLGRNALNISYVTGWGEHTARNQHSRMYANQfdpTSPNPPAGSLAGGANaglqdpfssnllagckpM-FCYVDDI 730
                    ****99999.****************************************999977*************9999999999999988755.9****** PP

                    T-CCCHB--HHHHHHHHHH CS
  Glyco_hydro_9 392 esystnEvaidynAplvga 410
                    +systnE+ai++n++l+++
     KIR66009.1 731 NSYSTNEIAINWNSALTWL 749
                    ******************8 PP

>> CelD_N  Cellulase N-terminal ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.1   3.4e+03      42      70 ..      18      49 ..      12      52 .. 0.80
   2 !   99.8   0.1   4.1e-32   1.2e-28       2      85 ..     188     270 ..     187     271 .. 0.97
   3 ?   -2.4   0.1         3     9e+03      40      56 ..     791     807 ..     783     832 .. 0.55

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.1
                XXXXXXXXX...XXXXXXXXXXXXXXXXXXXX CS
      CelD_N 42 gkvvytgtl...kkagsdessgenvhiiDFSd 70
                 + ++tgt+   + a++ +++ e+    DFS+
  KIR66009.1 18 TTLALTGTTagvAHAEVPPDAPEQLKNGDFSE 49
                5667889997666777777***********96 PP

  == domain 2  score: 99.8 bits;  conditional E-value: 4.1e-32
                 ---S--TTTTSS--XXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS
      CelD_N   2 aesnirvNQvGYlpqseKvAvlvsteassplqfelvdaktgkvvytgtlkkagsdessgenvhiiDFSdfttpGt.Ytikvdglg 85 
                 +++++rvNQvGYlp ++K+A++v tea++p +++l+ +++g+vv++g+ k++g+de+sg+nv++iDFS+f+tpGt Yt+ +dg++
  KIR66009.1 188 TGPRVRVNQVGYLPGGPKNATVV-TEATTPFAWQLR-SAAGAVVASGQSKPRGVDEASGQNVQTIDFSSFRTPGTgYTLVADGET 270
                 689********************.************.67*******************************************987 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3
                 XXXXXXXXXXXXXXXXX CS
      CelD_N  40 ktgkvvytgtlkkagsd 56 
                 +tg+ v++g ++k++  
  KIR66009.1 791 NTGTAVVNGWTAKFAFT 807
                 45666666666544432 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   8.1   2.2e-28   6.4e-25       1     101 []     767     870 ..     767     870 .. 0.92

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 2.2e-28
                 EEEEEEEEEE-..SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-.SS----S--EE CS
       CBM_2   1 aeatyavtseW..etGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgskt.gsnsaptsftv 96 
                 ++++y    +W  +tGfta+vt++N+g++++ngWt +++++  q+v ++W a+v+qsG +vta+n s+N+ i pGg+++fGf++++  g n+ap  +tv
  KIR66009.1 767 CSVSYDNYGTWhgGTGFTAQVTIRNTGTAVVNGWTAKFAFTGDQKVREAWMAKVTQSGATVTAKNESYNARIDPGGATTFGFNATTGgGANPAPGLVTV 865
                 6788888899943478*******************************************************************987615788999**** PP

                 TTEE- CS
       CBM_2  97 nGaaC 101
                 nGa C
  KIR66009.1 866 NGAPC 870
                 ***99 PP

>> CBM_4_9  Carbohydrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0     2e-18   6.1e-15       3     134 ..      41     161 ..      39     165 .. 0.96
   2 ?   -2.8   0.0       2.4   7.1e+03      48      88 ..     245     283 ..     213     289 .. 0.67
   3 ?   -2.4   0.2       1.8   5.3e+03      17      45 ..     816     842 ..     774     850 .. 0.56

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 2e-18
                 CCCECTSTTSTTTTSEECSSTCEEEEECGCSSSSEEEEEESCSS.TTCEEEEEEECCS-TT-EEEEEEEEEESSTSEEEEEEEEEESSTTSCTCEEEEE CS
     CBM_4_9   3 llkngtFedgglegWkargkssgkasvdvsyngtyslkvsgrge.twdgqaiditirlekgktYtvsfwvkassgksrtikvkigdtdadganydevad 100
                  lkng+F + g+++W+ +g+    + ++v+ +g+++ +v g+ + +wd  + ++   l+ g++Y++sf++ a+ g  +++k+ ++  +a   +y+++a 
  KIR66009.1  41 QLKNGDFSE-GVSPWFSYGT----GPLGVT-DGRLCATVAGGLAnPWDAGIGQDAVPLTAGSEYELSFDITATPG--ANVKAVLQLGAA---PYTQYAS 128
                 799******.**********....5*****.********************************************..**********99...******* PP

                 EEEEESTSEEEEEEEEE-SSCSCCEEEEEEEEC- CS
     CBM_4_9 101 ekvelkgewktlegtFtipkstdenvelyvelgk 134
                    + +g+   +  tFt + ++  ++++ +++g+
  KIR66009.1 129 VDAAATGTSAHFAKTFTAS-EDNPSAQIIFQVGG 161
                 899999*************.***********985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.4
                 TCEEEEEEECCS-TT-EEEEEEEEEESSTSEEEEEEEEEES CS
     CBM_4_9  48 wdgqaiditirlekgktYtvsfwvkassgksrtikvkigdt 88 
                 +++q id  +  ++g+ Yt+ ++   s++   +i+ +++d+
  KIR66009.1 245 QNVQTIDFSSFRTPGTGYTLVADGETSHP--FDISGTLYDK 283
                 46666666666678888888888777777..8888777776 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.8
                 SEECSSTCEEEEECGCSSSSEEEEEESCS CS
     CBM_4_9  17 Wkargkssgkasvdvsyngtyslkvsgrg 45 
                 W a  +    a+v+ + n +y+ ++  +g
  KIR66009.1 816 WMAKVTQ-SGATVTAK-NESYNARIDPGG 842
                 3333332.23344444.555555555555 PP

>> Pec_lyase  Pectic acid lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.4e-05       0.1      38      73 ..     624     659 ..     622     676 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.4e-05
   Pec_lyase  38 ndatvtellflaevykatkdekykdavrkglefllk 73 
                 n+  +++ ++l +++  t+d+ky+d++ ++ ++ll 
  KIR66009.1 624 NGNITNNAVVLGTAFDLTRDAKYRDGAVQAADYLLG 659
                 5666778899************************95 PP

>> CARDB  CARDB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.8   8.4e+03      56      72 ..      91     107 ..      87     120 .. 0.77
   2 ?   10.1   0.3   0.00024      0.73      17      71 ..     779     852 ..     766     865 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.8
                 EE-CTEEEEEEEEEE-S CS
       CARDB  56 sLaagesttvsftwtte 72 
                 +L ag++++ sf +t++
  KIR66009.1  91 PLTAGSEYELSFDITAT 107
                 69999999999998876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00024
                 TTSEEEEEEEEEE-SSS-EEEEEEEEEETTEEE.....EEEEE.................SEE-CTEEEEEEEEEE- CS
       CARDB  17 vgeentitvtvkNqGtaasgatkvalyldgelv.....gtvtv.................psLaagesttvsftwtt 71 
                  g+ +t +vt++N+Gta    +++++   g+++                           + +++g+ tt  f+ tt
  KIR66009.1 779 GGTGFTAQVTIRNTGTAVVNGWTAKFAFTGDQKvreawM---AkvtqsgatvtaknesynARIDPGGATTFGFNATT 852
                 5677899*******************9999997764430...23344444456677777777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 6446.46
//
Query:       KIR66010.1  [L=242]
Description: protein phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-13   49.5   2.1    7.9e-13   48.5   2.1    1.4  1  PP2C_2    Protein phosphatase 2C
    2.2e-10   40.6   0.0    1.6e-06   27.9   0.0    2.1  2  PP2C      Protein phosphatase 2C
      0.001   19.0   2.2     0.0025   17.8   2.2    1.7  1  SpoIIE    Stage II sporulation protein E (SpoIIE)


Domain annotation for each model (and alignments):
>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   2.1   1.3e-16   7.9e-13      12     187 ..      20     203 ..      16     218 .. 0.68

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 1.3e-16
      PP2C_2  12 cqDalavwtdsggsllaVaDGaGSakrSerGariaveavvealaelleseeeeeeallraleaailadvlke.eaeaqdaelkdyatTllaav..vtpd 107
                 +qDal+    sg +l+aVaDG+G  + ++ ++ria +av+     l+++e    +al+ al++ i++++ +  ea  +d e + ++tTl a++  +t+ 
  KIR66010.1  20 NQDALH----SGTWLVAVADGMGGMAAGDLASRIAIDAVGPLD--LATPE----DALVAALQSGIEQATARIaEAVREDPERQGMGTTLTALLfaRTGS 108
                 9****8....999999***********************9752..33333....345555555555444333044344669999********9766677 PP

      PP2C_2 108 eivalqiGDGaivvrdrdgevqllgepds.............geyanqttfltsedaeeel..............rirrlkledgdalllmTDGlansl 179
                  ++++++GD+ ++++ r+g +++++ +d+                  q ++ ++      +               + ++  ++gd+ ll++DGl+n +
  KIR66010.1 109 CLALAHVGDSRAYLY-REGVLKQITRDDTfvqmlvdqglitpD----QAASHPR------RavvtqalqggevspAYATMVPRAGDRWLLCSDGLSNVV 196
                 799*********665.788888887766655444433222221....2333333......133334466666666555555589***********9766 PP

      PP2C_2 180 rdeerfae 187
                 r ++ +ae
  KIR66010.1 197 R-PDTLAE 203
                 5.555554 PP

>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.7e-10   1.6e-06      34     139 ..      28     134 ..       6     139 .. 0.74
   2 !   10.8   0.0   4.6e-05      0.28     209     258 .]     186     231 ..     177     231 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.7e-10
                 CEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTH....HHHHHHHHHHHHHHHHHHHHHHHHCHCCT-EEEEEEEEEETTE..EEEEEESS-EEEE CS
        PP2C  34 vsffavfdghggseaakyarehleeilksqksfeele....kleqalrksfladtdeelksskantepsksGstavvalirgtk..lyvAnvGDSravL 126
                   ++av dg+gg  a ++a+    + +   +  ++ +     l+  + +++++ ++e ++ + +    +  G+t +  l+  t   l +A+vGDSra L
  KIR66010.1  28 TWLVAVADGMGGMAAGDLASRIAIDAVGPLDLATPEDalvaALQSGIEQATAR-IAEAVREDPE---RQGMGTTLTALLFARTGscLALAHVGDSRAYL 122
                 55899*************99998855555555554442223555666666666.6666666444...5899999888888887788************* PP

                 EETTEEEEECS-- CS
        PP2C 127 crkgnakkelted 139
                  r g  k ++t+d
  KIR66010.1 123 YREGVLK-QITRD 134
                 ****998.99988 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 4.6e-05
                 EEE-HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCHHCHC CS
        PP2C 209 iLacdGlwdvlsdqeavdlvrdelekkkspeevaeelvdeaiargsedni 258
                 +L +dGl +v+ +++++++   + +     +e+a++l+d a++ g  dn+
  KIR66010.1 186 LLCSDGLSNVVRPDTLAEVLAGHPD----RDECARRLIDLALRAGGPDNV 231
                 699****************999999....69************9988885 PP

>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   2.2   4.2e-07    0.0025       3     192 ..      27     238 ..      25     239 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.2e-07
                 TEEEEEEEECSSSSHHHHHHHHHHHHHHHHHHHTTTS..........HHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEESSSSEEEEET CS
      SpoIIE   3 grlalvvgDvvGhGleAalimgllrsalrelatagle..........paevlkrlnralardleeeerfaTavlavydpstgkleyanaGhpppllvrp 91 
                 g+++++v+D++G   +  l ++ ++ a+  l  a+ e           +++ +r+ +a+ +d e + +++T++ + +      l +a +G++  +l+r+
  KIR66010.1  27 GTWLVAVADGMGGMAAGDLASRIAIDAVGPLDLATPEdalvaalqsgIEQATARIAEAVREDPERQGMGTTLTALLFARTGSCLALAHVGDSRAYLYRE 125
                 78999*******444445555555566655555555566788877777777777777776666666899999999999999999*************** PP

                 TSTEEEEE--SS--TTTSSS..........................T-EEEEEEE--TTEEEEEESCCCCSSSHHHHHHCCCHHCHHHHCT.....HCC CS
      SpoIIE  92 dggtklllastglplGilpe..........................adyetaelelepgdtlllyTDGvtEardsdgelfgkerllallasaegeslee 164
                   g+ ++++     + +l +                            +  a++  ++gd+ ll++DG+     +       + l+++la +   + +e
  KIR66010.1 126 --GVLKQITRDDTFVQMLVDqglitpdqaashprravvtqalqggeVSPAYATMVPRAGDRWLLCSDGLSNVVRP-------DTLAEVLAGH--PDRDE 213
                 ..7777777777776666666788889*****************99888888899999***********977633.......4556777744..35899 PP

                 HHHHHHHHHHHHTTSSSSS-EEEEEEEE CS
      SpoIIE 165 lldalveellelgsgeleDDitllvlrv 192
                 ++++l++ +l++   +  D +t+++++v
  KIR66010.1 214 CARRLIDLALRA---GGPDNVTVVIADV 238
                 999999999995...4899999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1723.25
//
Query:       KIR66011.1  [L=837]
Description: ATP-dependent helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-53  180.9   0.0    2.3e-53  180.1   0.0    1.4  1  HrpB_C      ATP-dependent helicase C-terminal
      2e-10   41.0   0.0      3e-10   40.4   0.0    1.3  1  Helicase_C  Helicase conserved C-terminal domain
    1.8e-07   31.4   0.0    3.5e-07   30.5   0.0    1.5  1  HA2         Helicase associated domain (HA2)
     0.0033   17.1   1.2     0.0091   15.7   1.2    1.8  1  AAA_30      AAA domain
     0.0042   16.9   0.0     0.0071   16.1   0.0    1.2  1  DEAD        DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.052   13.9   2.3       0.17   12.2   1.0    2.2  2  AAA_19      AAA domain
       0.23   11.9   0.1        0.4   11.1   0.1    1.4  1  AAA         ATPase family associated with various cellular ac


Domain annotation for each model (and alignments):
>> HrpB_C  ATP-dependent helicase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.1   0.0   9.1e-57   2.3e-53       1     133 []     691     823 ..     691     823 .. 1.00

  Alignments for each domain:
  == domain 1  score: 180.1 bits;  conditional E-value: 9.1e-57
      HrpB_C   1 WlapllegvkslkelkkldlaealkallsweqqqeldelaPerlevpsgsriridYeeeeepvlsvrlqelfglketpkvaegrvpvlleLlsPaqrpl 99 
                 Wl p l+ ++++++l+++d+ +al++ll+w+ +++ld+laPer+ vpsgsr+r+dY++ ++pvl+v+lqe+fg+++ p+va+grvpvll+LlsPa+rp+
  KIR66011.1 691 WLGPELAAARRRADLARVDVVAALRRLLPWSLAARLDDLAPERIAVPSGSRVRVDYADPAAPVLAVKLQETFGWADAPRVAGGRVPVLLHLLSPAGRPV 789
                 *************************************************************************************************** PP

      HrpB_C 100 qvtkdLasFwkgsYaevrkelrgrYpkHpWPedP 133
                 +vt+dLasFw++ Y++vr+elrgrYp+HpWPedP
  KIR66011.1 790 AVTADLASFWRTGYPQVRAELRGRYPRHPWPEDP 823
                 *********************************9 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   1.2e-13     3e-10      11     109 ..     224     340 ..     212     342 .. 0.86

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1.2e-13
                 HHTTTTSEEEEEESSHHHHHH..HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH.......... CS
  Helicase_C  11 kleeeggkilifvntidrlek..vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv.......... 97 
                  l +++g++l f++ + ++     +l   +  +  ++lhg+l + e++++l+    g+++v++at vae ++++p+v++V++ +l r +          
  KIR66011.1 224 ALAQHDGDVLAFLPGVGEIAAvtGRLAALRGTVDLLPLHGRLRAAEQDAALRPA--GRRRVVLATAVAESSLTVPGVRVVVDAGLARVPrvdlsrglga 320
                 45788999999999999886664233333568********************98..99****************************8877889999999 PP

                 ........HHHHHHHTTSSS CS
  Helicase_C  98 ........tsyiqriGRtgR 109
                         + + qr+GR+gR
  KIR66011.1 321 lvtvpvsrAAATQRAGRAGR 340
                 99999999***********9 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.4e-10   3.5e-07       2      62 ..     404     462 ..     403     499 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.4e-10
         HA2   2 lelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsvee 62 
                   +L+ lgALd  g++T+ Gr++a    +prla+ Ll +a      +d ++++vA+l+ + 
  KIR66011.1 404 RDTLTTLGALDAAGRITDRGRAIAGAGTHPRLARALLDGAPV--VGADRAAAVVALLADDT 462
                 678************************************777..899*********99444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.2   3.6e-06    0.0091      16      68 ..      25      81 ..      16     149 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.6e-06
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaag......grviglAptgkaAkvLaeelgi 68
                 g   avl++p+GtGKtt+   +++ + a        +rv++ A  +++A+ L+e +g 
  KIR66011.1 25 AG--GAVLVAPPGTGKTTLAPLAVAGAVAGRvvlaqpRRVAARAAAHRMAALLGERVGD 81
                44..389***********87666554443335677779999999999999999998773 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.8e-06    0.0071      14     169 ..      25     162 ..      13     167 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.8e-06
                 TCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldngvdivvgtpgrlddl 111
                  g  ++ a+ G+GKT+ + ++v  +v       + ++++  P r  a+  ++++  ++ + ++ rv       a r ++++  + +++ v t+g l++ 
  KIR66011.1  25 AGGAVLVAPPGTGKTTLAPLAVAGAV-------AGRVVLAQPRRVAARAAAHRMAALLGErVGDRVG-----YAVRGERRVS-AATRVEVVTTGLLVRR 110
                 45667889***************666.......67**********************9974554554.....4444455555.6688889999****97 PP

                 HHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 112 lstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATl 169
                 l++   +l  v  + lDE+++ + +    ++   +++ ++ t +   +  ++++SAT+
  KIR66011.1 111 LHRDP-ELPGVGAVLLDECHERQLD---ADLALAFTAQARETLR--PDLWLLAMSATP 162
                 75444.6*************86554...2222222222222222..223388888887 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.0   6.8e-05      0.17      12      62 ..      27      79 ..      19     130 .. 0.76
   2 ?   -0.1   0.0      0.41     1e+03      35      66 ..     126     157 ..     119     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.8e-05
      AAA_19 12 vllvtaGpGtGKTrvlkhivallvelggv..kpeeillvaftgrAakelrerl 62
                  +++a+pGtGKT++   +va +v+ + v  +p+++++ a ++r a  l er+
  KIR66011.1 27 GAVLVAPPGTGKTTLAPLAVAGAVAGRVVlaQPRRVAARAAAHRMAALLGERV 79
                56899*********988888877776654115577777777777666666665 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.41
      AAA_19  35 velggvkpeeillvaftgrAakelrerlaalg 66 
                  e ++++++  l++aft +A + lr  l  l 
  KIR66011.1 126 DECHERQLDADLALAFTAQARETLRPDLWLLA 157
                 556677778889**********9998774444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00016       0.4       2      17 ..      29      44 ..      28      81 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
                EEESSTTSSHHHHHHH CS
         AAA  2 llyGppGtGKTllaka 17
                +l+ ppGtGKT+la  
  KIR66011.1 29 VLVAPPGTGKTTLAPL 44
                6899*********964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 5998.33
//
Query:       KIR66012.1  [L=66]
Description: hypothetical protein TK50_12220 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-23   82.9   1.2    1.3e-23   82.7   1.2    1.1  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   1.2   7.5e-28   1.3e-23       1      53 [.       9      60 ..       9      61 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 7.5e-28
      DUF397  1 atWrKSsySgggggnCVEvaalpdavavRDSkdpdgpvLtftpaewaaFlagv 53
                a+Wr Ss+S+g+g nCVEva+++++vavRDSkd++gp+L+f p++w+aF+ag+
  KIR66012.1  9 AAWRTSSRSSGNG-NCVEVATADGRVAVRDSKDREGPALVFAPGAWDAFVAGL 60
                58********998.7****98888678************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 551.84
//
Query:       KIR66013.1  [L=280]
Description: DNA-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-14   54.0   1.7    1.6e-14   54.0   1.7    2.7  3  HTH_31    Helix-turn-helix domain
    2.5e-06   27.4   0.1    4.5e-06   26.6   0.1    1.4  1  HTH_19    Helix-turn-helix domain
    4.1e-06   26.7   0.1    9.2e-06   25.6   0.1    1.6  1  HTH_3     Helix-turn-helix
    0.00064   19.5   1.5     0.0011   18.8   0.3    2.1  2  HTH_25    Helix-turn-helix domain
     0.0031   17.4   1.5       0.02   14.8   0.2    2.4  2  HTH_37    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.017   15.0   0.4       0.16   11.9   0.2    2.4  2  MarR_2    MarR family
      0.025   14.6   0.6      0.025   14.6   0.6    2.3  2  HTH_20    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   1.7   6.2e-18   1.6e-14       1      64 []      11      73 ..      11      73 .. 0.96
   2 ?   -1.9   0.9       1.8   4.5e+03      35      35 ..     142     142 ..     109     156 .. 0.61
   3 ?   -2.9   0.0       3.5   8.9e+03      28      39 ..     266     277 ..     258     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 6.2e-18
      HTH_31  1 aLGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerael 64
                +++++Lr+lRer+G++++ +A++l +s+s lsr+E++++g  +p++++a++ ++++++a+ ++l
  KIR66013.1 11 RIARELRHLRERSGMTLDVAARQLDMSKSNLSRIENAQIG-IKPRDVRAALALYQVTGADAEAL 73
                5799***********************************9.****************9998876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.8
      HTH_31  35 E 35 
                 E
  KIR66013.1 142 E 142
                 1 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.5
      HTH_31  28 estlsrlEqGrr 39 
                 ++ l+rlE + r
  KIR66013.1 266 ADSLTRLEEASR 277
                 577889987655 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.1   1.8e-09   4.5e-06       4      60 ..      16      74 ..      13      76 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.8e-09
      HTH_19  4 LkeaReelgltqeelaerlgisrskisaiEngkkdvpsaell...lkiaealgidleyll 60
                L+ +Re  g+t++  a++l++s+s +s iEn ++  ++++++   l++++  g d+e+l+
  KIR66013.1 16 LRHLRERSGMTLDVAARQLDMSKSNLSRIENAQI-GIKPRDVraaLALYQVTGADAEALI 74
                899*******************************.***9999888888888888888875 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   3.6e-09   9.2e-06       1      51 [.      16      66 ..      16      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.6e-09
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSE CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvs 51
                l+ lR+  g+++  +A+ l++s+s +sriEn +  + ++ + + +  ++v+
  KIR66013.1 16 LRHLRERSGMTLDVAARQLDMSKSNLSRIENAQIGIKPRDVRAALALYQVT 66
                7889****************************999***9999999999987 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.3   4.3e-07    0.0011       2      39 ..      16      53 ..      15      63 .. 0.88
   2 ?   -3.1   0.0       2.9   7.6e+03      38      49 ..     122     133 ..     119     136 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4.3e-07
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT--TTSS CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEeddfdalp 39
                Lr  Re+ g++l+ +a+++ ++k+ l ++E+ ++   p
  KIR66013.1 16 LRHLRERSGMTLDVAARQLDMSKSNLSRIENAQIGIKP 53
                999****************************9986666 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.9
                 SS-HHHHHHHHH CS
      HTH_25  38 lpepvylrgylr 49 
                 l  ++y+r++ r
  KIR66013.1 122 LQTEAYARAIYR 133
                 666778887765 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   7.9e-06      0.02      15      56 ..       8      49 ..       3      50 .. 0.94
   2 ?    0.7   0.1       0.2   5.1e+02      18      41 ..     126     149 ..     113     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.9e-06
                HHHHHHHHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT-- CS
      HTH_37 15 aKaqlalaiaeliekrelsqseaaqllgiaqPkvsrllrgkl 56
                 ++++a++++ l+e+ + +   aa+ l ++++++sr++++++
  KIR66013.1  8 RRRRIARELRHLRERSGMTLDVAARQLDMSKSNLSRIENAQI 49
                5899**********************************9886 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHCT--HHHHHHHH CS
      HTH_37  18 qlalaiaeliekrelsqseaaqll 41 
                 ++a+ai++l +++e   +++a++l
  KIR66013.1 126 AYARAIYRLTAGEERIERKVAARL 149
                 68999*******999999999987 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   6.1e-05      0.16       8      41 ..      13      44 ..       7      46 .. 0.91
   2 ?   -0.2   0.0      0.37   9.4e+02       3      18 ..      65      80 ..      56     101 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.1e-05
                HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHH CS
      MarR_2  8 arvLaaLgrrpgrdltvgelarrlglsksavsri 41
                ar L +L+ r g  +t    ar l++sks++sri
  KIR66013.1 13 ARELRHLRERSG--MTLDVAARQLDMSKSNLSRI 44
                6669999****9..*******************8 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.37
                --HHHHHHHHHHHCTT CS
      MarR_2  3 ltpaqarvLaaLgrrp 18
                +t+a+a +L +++r+ 
  KIR66013.1 65 VTGADAEALIEIARGA 80
                7899999999999876 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.6   9.9e-06     0.025      12      43 ..       9      43 ..       2      43 .. 0.88
   2 ?   -1.9   0.1       1.4   3.7e+03      13      34 ..     129     149 ..     125     158 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.9e-06
                HHHHHHHH...STCTTB-HHHHHHHHTS-HHHHHH CS
      HTH_20 12 RrrilraL...araegltaselaerldlskntlsy 43
                Rrri r+L   +++ g+t+   a++ld+sk++ls+
  KIR66013.1  9 RRRIARELrhlRERSGMTLDVAARQLDMSKSNLSR 43
                77777777777**********************96 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.4
                 HHHHHHHSTCTTB-HHHHHHHH CS
      HTH_20  13 rrilraLaraegltaselaerl 34 
                 r+i+r+   +e++    +a+rl
  KIR66013.1 129 RAIYRLT-AGEERIERKVAARL 149
                 7788888.77777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1872.05
//
Query:       KIR66014.1  [L=208]
Description: hypothetical protein TK50_12230 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-39  135.1   6.7    3.8e-39  134.8   6.7    1.0  1  GPP34      Golgi phosphoprotein 3 (GPP34)


Domain annotation for each model (and alignments):
>> GPP34  Golgi phosphoprotein 3 (GPP34)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.8   6.7   2.1e-43   3.8e-39       2     200 ..       4     192 ..       3     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: 134.8 bits;  conditional E-value: 2.1e-43
       GPP34   2 aeellLLalddekgrlsfandnlsyaLaGAiLiELalrgriavdkeggrvvvidsrptgdplldealklikaserprsvktwvdllsksvrervakgLv 100
                 a+e++L+a++d +g++ ++ ++ + +La+A+L+EL+l g ++v   +g v+v+d rp+ d+l + +l+++ ++++++sv+tw+  l +s++++va++L+
  KIR66014.1   4 ADEFYLIAHNDSRGKPKLHPSAAGIGLAAALLGELVLFGQVTV--AAGNVTVVDRRPPADALAHTVLDQLVGESQHQSVRTWLSFLGQSAATSVAERLA 100
                 68*****************************************..89*********************9999*************************** PP

       GPP34 101 dkGilrtekrrflglfdmtthpvadtaakeavrrrvraaltsgepadprtaaLvallaaagllenllpdleareaaarakelleefaegelvaeavrea 199
                 ++G+lr++++r+l l  + ++ + d +a++++ +r+ra+l ++ep++  +a L++l+aaagl++++l++   r a++r+  l +   +   ++++++e+
  KIR66014.1 101 RAGVLRRQENRRL-LRTTVSYVPIDLNAVAWPATRLRALLDRPEPPTVPDALLLGLVAAAGLTREVLWSAGPR-AHHRLSVLIP---A---LPPPLKEL 191
                 ********99988.7777799999****************9999996666******************97666.5677777744...2...55555555 PP

       GPP34 200 v 200
                 v
  KIR66014.1 192 V 192
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1606.69
//
Query:       KIR66015.1  [L=508]
Description: amino acid permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-25   89.6  35.8    2.1e-25   89.3  35.8    1.1  1  AA_permease    Amino acid permease
    1.9e-25   89.6  38.8    2.4e-25   89.3  38.8    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3  35.8   2.3e-29   2.1e-25       3     465 ..      28     472 ..      26     479 .. 0.83

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 2.3e-29
  AA_permease   3 lvialggviGtglfvglgvvlsqaGplga.llayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGln....ylfswitvlalelt 95 
                  +++ l  + ++++  g   +  ++ ++++  la+l++g+v++l+ +   ++a  + ++g+fy+y+sr lg+ +G+  ++     y  +++  +++  +
   KIR66015.1  28 IFFVLSAAAPLTVVAGVVTTGYAVTGVTGmPLAFLVVGAVLALFSVGYVAMARRVENAGAFYAYVSRGLGRPAGVGAAWVallaYNALQVGLYGAVGA 125
                  5666666677777777766666654444449*************999999999999************************988888888888888889 PP

  AA_permease  96 aasiliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfake 193
                  aa ++++ +  + + p  wv+++v ++++ ++ l+ v v g     ++ ++++a ia+i+v+  l   g+p+ g        ++s   + l+p+    
   KIR66015.1 126 AATPVLERL--FGASPAWWVVALVAWALVAVLGLLRVDVNGM----VLAVLLVAEIAVILVFD-LGQLGHPAGG--------SVS--LAALSPD---- 202
                  9999*****..*****99999********************9....88888888888888882.3333444444........222..3345555.... PP

  AA_permease 194 eegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlapl 291
                   +  + +  +++v ++ +f G+e+ ++ ++E++dP++++P a+   v +i+ +Y ls+ ++++ v+ +  +  ++  s+  +f++++ ++g  ++ ++
   KIR66015.1 203 -SLLVPGAGALLVLAMTGFVGFESSVVFSEESRDPKRTVPMATYLSVAIIAGLYALSSWAMTVAVGPDQISAQAGEQSVELIFNLAGAHLGDTAV-TI 298
                  .5666778999*********************************************************988877776666699999999998876.67 PP

  AA_permease 292 inaviltaalssansslysasRvlyslakdglaP.kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsyl 388
                    a+  t++l +++s+  ++ R  ++l +++++P ++++ + + g+P +a l+ ++++ll+++l ++n   p+   f+ a s+  g+ v+lli+++++
   KIR66015.1 299 GQALFMTSVLAAMISFHNTTARYAFALGRERVLPaAFGQTSPRTGSPRVASLAQSALGLLVIVLYAVNGWDPVLQLFYYAGSG-GGFGVLLLIATTSI 395
                  788999****************************9999************************999999996666666666666.67777777777777 PP

  AA_permease 389 rfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwg..aasfaaaylivllfliilvg 465
                      a+++++r ++e   +   +p ++ ++l+a+i++++ ++ +++  ++++   w   aa+ +aa ++vl+ l++ + 
   KIR66015.1 396 -AVMAYFARTR-AQENLWRRLIAPGLAAVALVAIITVAVDNFAILLGVAPDSALRWAvpAAYPVAALVGVLWALVLRNS 472
                  .5778888888.5577789999999999********9999999999887777777763357888888899888888765 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3  38.8   2.6e-29   2.4e-25       1     397 [.      22     435 ..      22     464 .. 0.75

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 2.6e-29
  AA_permease_2   1 lsllsafalvigsv........igsgifvknlaasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfay 88 
                    l+  s++++v++++        + ++++++  ++ +g+ l++ v++avl++ ++v+  y+ ++ + ++ g  y y++++ g++++  +aw +++ay
     KIR66015.1  22 LGVPSVIFFVLSAAapltvvagVVTTGYAV--TGVTGMPLAFLVVGAVLAL-FSVG--YVAMARRVENAGAFYAYVSRGLGRPAGVGAAWVALLAY 112
                    577899999999998987443333444544..8889999999999999988.5666..5567999******************************* PP

  AA_permease_2  89 vpvlasilsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffp 184
                     + l+++l+ a+++ ++ + + l+g   ++ ++a +  +lva++ ++ +   +++  +l ++ i  +++++ +  l    gg  s          p
     KIR66015.1 113 NA-LQVGLYGAVGAAATPVLERLFGASPAWWVVALVAWALVAVLGLLRVDVNGMVLAVLLVAEIA-VILVFDLGQLGHPAGGSVS-----LAALSP 201
                    *9.99*****9999999999999998767777666666666666666666666666666666663.4444444444444444433.....334445 PP

  AA_permease_2 185 n..gwpgvllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavg...gkvva 273
                    +    pg  + l  ++  f+Gfes++++see  ++k++vp+a+ ++++i+++ly l + a++ +v++d+i+  ++  + ++l f+ +g   g+++ 
     KIR66015.1 202 DslLVPGAGALLVLAMTGFVGFESSVVFSEEsrDPKRTVPMATYLSVAIIAGLYALSSWAMTVAVGPDQISAQAG-EQSVELIFNLAGahlGDTAV 296
                    55577788999999*****************888889*********************************98887.77899999999944344555 PP

  AA_permease_2 274 iivvilialsllgaintavigssrvlealardgvlPrffakvn.kfgspiraiiltaivslillllfllas....saaynfllsvsslgliisyll 364
                    +i ++l++ s+l a++++  +++r+++al+r++vlP  f +++ ++gsp +a   +  + l++++l++++        +++  s + +g+++ ++ 
     KIR66015.1 297 TIGQALFMTSVLAAMISFHNTTARYAFALGRERVLPAAFGQTSpRTGSPRVASLAQSALGLLVIVLYAVNGwdpvLQLFYYAGSGGGFGVLLLIAT 392
                    555556666**********************************9****************988888875446555567889999999999999999 PP

  AA_permease_2 365 liigalilrkk.rphlkrpgk.........ilvaiigalfllf 397
                    ++i+++ +  + r +++ +++         +lvaii + +  f
     KIR66015.1 393 TSIAVMAYFARtRAQENLWRRliapglaavALVAIITVAVDNF 435
                    9999886665514455444444322222223333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       861  (0.0480228); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 3266.96
//
Query:       KIR66016.1  [L=198]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-09   37.7   0.7    5.4e-09   36.3   0.7    1.8  1  Acetyltransf_1   Acetyltransferase (GNAT) family
      1e-08   35.5   0.0    1.7e-08   34.8   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    3.3e-08   33.5   0.0    5.7e-08   32.8   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0003   20.9   0.0     0.0027   17.8   0.0    2.0  2  Acetyltransf_9   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.7   1.2e-12   5.4e-09      39     117 .]      87     173 ..       7     173 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.2e-12
                     EETTEEEEEEEEEEEET...........TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  39 eedgeliGfisllkipd...........ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                      +d +l++ ++++ + +           ++ g+ ++ +laV p+++g+G+GsaLl++   ++  +g+   +l  e++ +  + lY ++G+
      KIR66016.1  87 DYDARLAAACGAWVDRFrhlddlfaashPHDGHHHLAFLAVTPDRQGRGIGSALLRHHHAWLDANGVPG-YL--EASSEIGRDLYARHGY 173
                     4455555555555555566677888888999************************************88.88..4467788****99998 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   3.8e-12   1.7e-08      24      76 .]     117     175 ..      90     175 .. 0.68

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 3.8e-12
                     S..TCTEEEEE-GGGTTSSHHHHHHHHTT.....SEEEEEEEEETHH..HHHHHHHHTTEEE CS
  Acetyltransf_7  24 d..aeitrlaVdpeyrgkGiGraLleaae.....kgiileqlelnae..kaikfYeklGFee 76 
                     d  +++ +laV p+ +g+GiG+aLl++ +     +g+     +l+a+    +++Y+++G+++
      KIR66016.1 117 DghHHLAFLAVTPDRQGRGIGSALLRHHHawldaNGVP-G--YLEASseIGRDLYARHGYRP 175
                     24334455******************722344445532.2..34222124566*******85 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.3e-11   5.7e-08      51     124 ..     119     191 ..     109     193 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 1.3e-11
  Acetyltransf_10  51 gshisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnasp.yavpfYeklGFkavgeeqeenGirfvpMe 124
                      ++h++ l+V p+ +g+Gig+aLl +  + ++ + +     ++as+   +++Y ++G+++ +  +  +G  f pM 
       KIR66016.1 119 HHHLAFLAVTPDRQGRGIGSALLRHHHAWLDAN-GV-PGYLEASSeIGRDLYARHGYRPREVFRLPDGTPFFPMW 191
                      34*************************999544.33.79999999899**************************5 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.099   4.4e+02       3      60 ..       7      59 ..       5      72 .. 0.76
   2 !   17.8   0.0   6.1e-07    0.0027      77     127 ..     123     175 ..     120     176 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.099
                    EEE-GGGHHHHHHHHHHHTT----H..HHHHHHHHHHTTSEEEEEEETTEEEEEEEEE CS
  Acetyltransf_9  3 relteedldevlellkyaFqdeespleeireyfrklleesrvlgaedngelvgqlall 60
                     +l +++   v+e  ++aF + +        ++ +   + r+++a + + lvg+++++
      KIR66016.1  7 ERLGPAETRLVAERIAEAFLVLPAT-----HWLVPDATRRRAVLADNFEILVGHAMAH 59
                    5566666667777777777777776.....4788889999999999999999999886 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 6.1e-07
                     EEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--SSH..HHHHTTT-EE CS
  Acetyltransf_9  77 tgVavapehrgrgvlskLlaraleemreegqplsllfPssi..piYrrfGyei 127
                     +  av p+ +grg+ s+Ll+++++ ++++g+p  l   s+i  ++Y r Gy++
      KIR66016.1 123 AFLAVTPDRQGRGIGSALLRHHHAWLDANGVPGYLEASSEIgrDLYARHGYRP 175
                     6689****************************888887775559******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 1353.60
//
Query:       KIR66017.1  [L=274]
Description: RNA polymerase sigma factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-20   71.0   2.1    1.7e-18   65.9   0.9    2.6  2  Sigma70_r4       Sigma-70, region 4
    4.3e-17   61.6   0.0    7.8e-17   60.8   0.0    1.5  1  Sigma70_r2       Sigma-70 region 2
    1.4e-13   50.7   0.2    1.3e-12   47.7   0.1    2.1  2  Sigma70_r3       Sigma-70 region 3
    4.5e-11   42.2   0.2    4.5e-11   42.2   0.2    2.4  3  Sigma70_r4_2     Sigma-70, region 4
    2.1e-05   24.3   3.7      0.013   15.4   0.2    3.0  3  MarR_2           MarR family
    9.3e-05   22.3   1.3     0.0029   17.5   0.1    2.6  2  HTH_Crp_2        Crp-like helix-turn-helix domain
    0.00032   20.4   0.1     0.0016   18.2   0.0    2.2  2  HTH_23           Homeodomain-like domain
    0.00035   20.4   0.2     0.0016   18.3   0.1    2.0  2  MarR             MarR family
     0.0011   18.5   0.1     0.0046   16.5   0.1    1.9  2  GerE             Bacterial regulatory proteins, luxR family
      0.005   16.9   0.1       0.02   14.9   0.1    2.0  1  HTH_3            Helix-turn-helix
     0.0077   16.1   0.1      0.018   15.0   0.0    1.6  2  Sigma70_ECF      ECF sigma factor
     0.0082   16.0   0.1        6.5    6.7   0.0    3.1  2  HTH_AsnC-type    AsnC-type helix-turn-helix domain
  ------ inclusion threshold ------
       0.01   15.4   0.3      0.054   13.1   0.2    2.3  2  HTH_24           Winged helix-turn-helix DNA-binding
      0.013   14.9   0.0        2.8    7.5   0.0    2.4  2  HTH_Tnp_ISL3     Helix-turn-helix domain of transposase famil
      0.014   15.9   0.0      0.028   15.0   0.0    1.4  1  DUF134           Protein of unknown function  DUF134
      0.015   15.1   0.3      0.089   12.6   0.1    2.3  2  HTH_10           HTH DNA binding domain
      0.025   14.5   0.1        4.3    7.3   0.0    2.5  2  HTH_5            Bacterial regulatory protein, arsR family
      0.029   14.1   0.6       0.15   11.9   0.1    2.3  2  HTH_38           Helix-turn-helix domain
      0.029   14.3   0.0       0.11   12.4   0.0    1.9  2  Phage_antitermQ  Phage antitermination protein Q
      0.033   14.5   0.5      0.033   14.5   0.5    2.6  2  HTH_31           Helix-turn-helix domain
      0.035   14.0   0.1      0.083   12.8   0.1    1.5  1  YdaS_antitoxin   Putative antitoxin of bacterial toxin-antito
      0.036   14.0   0.4       0.16   12.0   0.2    2.2  2  HTH_37           Helix-turn-helix domain
      0.058   13.5   0.0        1.5    9.0   0.0    2.5  2  HTH_AraC         Bacterial regulatory helix-turn-helix protei
        2.2    8.1   5.3        2.9    7.8   0.1    3.1  3  HTH_IclR         IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.068        51      21      37 ..     152     168 ..     143     168 .. 0.86
   2 !   65.9   0.9   2.2e-21   1.7e-18       1      49 [.     219     267 ..     219     268 .. 0.99

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.068
                 --HHHHHHHHTS-HHHH CS
  Sigma70_r4  21 lTleEIgerlgiSrerV 37 
                  T ++I+++l +++e V
  KIR66017.1 152 PTVADIAAHLKLTEEEV 168
                 599***********977 PP

  == domain 2  score: 65.9 bits;  conditional E-value: 2.2e-21
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLR 49 
                 aLa+L+ere+++l+lrf+ +lT+++I+e+ g+S+++V+++++rAl kLR
  KIR66017.1 219 ALATLDEREQKILTLRFYGNLTQSQIAEQIGVSQMHVSRLLARALTKLR 267
                 8***********************************************9 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0     1e-19   7.8e-17       2      70 ..      54     122 ..      53     123 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 1e-19
                 HHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2   2 verylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70 
                 +e+ lpl  +la+r+ g+g+  +Dl+Q a ++l++a+++fdp+rgv+f  +++ ++ +++++++R+r +
  KIR66017.1  54 IEAWLPLANHLAHRYSGRGEPTDDLAQTAAVGLIKAIDKFDPSRGVDFAGYAIPTIIGELKRHFRDRTW 122
                 7899**************************************************************987 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.1   1.7e-15   1.3e-12       2      69 ..     133     203 ..     132     208 .. 0.85
   2 ?    0.5   0.0      0.86   6.5e+02      23      43 ..     241     261 ..     239     264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 1.7e-15
                 HHHHHHHHHHHHHHHHSSXXXHHHHHHHHTXXHHHHHHHHHHHXXX..EETTXBSSSSTT.XBSTTTXBXS CS
  Sigma70_r3   2 klnkikraqreLeqelgrePtpeEiAeeLglseekVrevleaarep..vSldlpvgeeed.telgdlledd 69 
                 ++  i+ a   L q+lgr+Pt+++iA++L+l+ee+V+e le ar +  vSl++p g+ +  telgd+l  +
  KIR66017.1 133 LRLAISDANSSLLQTLGRSPTVADIAAHLKLTEEEVLEGLEGARAYnaVSLSTPTGDGDRaTELGDMLGGE 203
                 5667999**********************************999763389999*99875437899887655 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.86
                 HHHHHHHHTXXHHHHHHHHHH CS
  Sigma70_r3  23 peEiAeeLglseekVrevlea 43 
                    iAe+ g+s+  V ++l  
  KIR66017.1 241 QSQIAEQIGVSQMHVSRLLAR 261
                 678**********99999876 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       9.4     7e+03       4      12 ..      32      40 ..      30      41 .. 0.82
   2 ?   -0.4   0.0       1.3   9.5e+02      29      41 ..     154     166 ..     153     168 .. 0.82
   3 !   42.2   0.2   6.1e-14   4.5e-11       4      54 .]     216     266 ..     213     266 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 9.4
                  HHHHHTTS- CS
  Sigma70_r4_2  4 lrealaeLp 12
                  l++a+a+Lp
    KIR66017.1 32 LLNAMAALP 40
                  789999999 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.3
                   HHHHHHHHT--HH CS
  Sigma70_r4_2  29 ykEIAellgiseg 41 
                    ++IA+ l+++e 
    KIR66017.1 154 VADIAAHLKLTEE 166
                   799*****99985 PP

  == domain 3  score: 42.2 bits;  conditional E-value: 6.1e-14
                   HHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   4 lrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   l  ala+L er+++i++lr++ +l++ +IAe++g+s   V + l+RA+ kL
    KIR66017.1 216 LGPALATLDEREQKILTLRFYGNLTQSQIAEQIGVSQMHVSRLLARALTKL 266
                   5569********************************************998 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.4   2.5e+03       2      19 ..      24      41 ..      23      51 .. 0.76
   2 !    8.9   0.1    0.0019       1.4       6      34 ..     140     164 ..     135     169 .. 0.85
   3 !   15.4   0.2   1.7e-05     0.013      11      45 ..     220     262 ..     209     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.4
                T--HHHHHHHHHHHCTTT CS
      MarR_2  2 gltpaqarvLaaLgrrpg 19
                +lt + a++L+a ++ p 
  KIR66017.1 24 ALTDSAADLLNAMAALPA 41
                578899999999988775 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHCTTTSEEEHHHHHHHHTSS CS
      MarR_2   6 aqarvLaaLgrrpgrdltvgelarrlgls 34 
                 a   +L  Lgr+p    tv+++a++l+l+
  KIR66017.1 140 ANSSLLQTLGRSP----TVADIAAHLKLT 164
                 56679999****9....*********997 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 1.7e-05
                 HHHHHCTTTS........EEEHHHHHHHHTSSHHHHHHHHHHH CS
      MarR_2  11 LaaLgrrpgr........dltvgelarrlglsksavsrilkrL 45 
                 La L  r+ +        +lt++++a+  g+s+  vsr+l+r+
  KIR66017.1 220 LATLDEREQKiltlrfygNLTQSQIAEQIGVSQMHVSRLLARA 262
                 66666666668888788889*********************98 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1      0.12        92      17      38 ..     147     168 ..     124     176 .. 0.68
   2 !   17.5   0.1   3.9e-06    0.0029       9      44 ..     222     261 ..     214     265 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.12
                 EEEEEHHHHHHHHHTTSSHHHH CS
   HTH_Crp_2  17 eielpltqeelAsmlGltretv 38 
                 ++  + t +++A++l lt e v
  KIR66017.1 147 TLGRSPTVADIAAHLKLTEEEV 168
                 455578999*********9988 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 3.9e-06
                 HHHCTTTC..EEEE..EHHHHHHHHHTTSSHHHHHHHHHH CS
   HTH_Crp_2   9 rlaeragg..eiel..pltqeelAsmlGltretvsrilse 44 
                  l+er+++  ++++  +ltq ++A+ +G+++ +vsr+l++
  KIR66017.1 222 TLDEREQKilTLRFygNLTQSQIAEQIGVSQMHVSRLLAR 261
                 55555444443333459********************975 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.5   1.8e+03      19      30 ..     153     164 ..     153     166 .. 0.83
   2 !   18.2   0.0   2.1e-06    0.0016      11      41 ..     233     262 ..     221     274 .] 0.74

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.5
      HTH_23  19 svreIAreLgvs 30 
                 +v++IA++L  +
  KIR66017.1 153 TVADIAAHLKLT 164
                 6899****9877 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 2.1e-06
      HTH_23  11 llllaeGlsvreIAreLgvsrrTvyrwlkry 41 
                 l+ +   l++++IA++ gvs+++v+r l r 
  KIR66017.1 233 LRFYG-NLTQSQIAEQIGVSQMHVSRLLARA 262
                 44444.689*******************995 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       3.1   2.3e+03      17      30 ..     151     164 ..     143     165 .. 0.74
   2 !   18.3   0.1   2.1e-06    0.0016      11      40 ..     232     261 ..     229     264 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3.1
                 TEEHHHHHHHHTS- CS
        MarR  17 plsvseLakklgvs 30 
                 +++v+++a +l+++
  KIR66017.1 151 SPTVADIAAHLKLT 164
                 37899999999875 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 2.1e-06
                 HHHHSTTEEHHHHHHHHTS-HHHHHHHHHH CS
        MarR  11 ilyeqgplsvseLakklgvskstvtrvldr 40 
                 +l+  g+l++s++a+++gvs+++v+r+l r
  KIR66017.1 232 TLRFYGNLTQSQIAEQIGVSQMHVSRLLAR 261
                 677789********************9976 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.9   1.4e+03      19      32 ..     153     166 ..     143     169 .. 0.83
   2 !   16.5   0.1   6.2e-06    0.0046       2      45 ..     222     266 ..     221     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.9
                 -HHHHHHHHTS-HH CS
        GerE  19 snkeIAeelniSek 32 
                 ++ +IA+ l + e+
  KIR66017.1 153 TVADIAAHLKLTEE 166
                 67899*99999886 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 6.2e-06
                 SS-HHHHHHHHHHCTTS.-HHHHHHHHTS-HHHHHHHHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGk.snkeIAeelniSekTVkvhksnimkKL 45 
                 +L++RE+++L+l   G+ +  +IAe+ ++S+  V+  ++++++KL
  KIR66017.1 222 TLDEREQKILTLRFYGNlTQSQIAEQIGVSQMHVSRLLARALTKL 266
                 79**********9999626679**********************9 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   2.7e-05      0.02       9      29 ..     238     258 ..     237     262 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.7e-05
                 THHHHHHHHHHTSSHHHHHHH CS
       HTH_3   9 glsqeeLAeklGvsrstisri 29 
                 +l+q ++Ae +Gvs+ ++sr+
  KIR66017.1 238 NLTQSQIAEQIGVSQMHVSRL 258
                 89*****************98 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.5   4.1e+03     154     180 ..     154     180 ..     152     185 .. 0.77
   2 !   15.0   0.0   2.4e-05     0.018     118     183 ..     204     270 ..     186     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.5
  Sigma70_ECF 154 veEiAeklgvskrtverrlalaRawle 180
                  v++iA++l++ +  v   l+ aRa  +
   KIR66017.1 154 VADIAAHLKLTEEEVLEGLEGARAYNA 180
                  778999999999888888888887655 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.4e-05
  Sigma70_ECF 118 dspdelleLdeale.rllsldpeqarlvelrkleGlsveEiAeklgvskrtverrlalaRawlerel 183
                  d++ el eL  al   l+ ld++  + + lr+   l+   iAe++gvs+  v r la a ++l+ +l
   KIR66017.1 204 DNEFELAELRVALGpALATLDEREQKILTLRFYGNLTQSQIAEQIGVSQMHVSRLLARALTKLRGQL 270
                  5556666666666524566999*********************************999999988776 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.016        12      19      36 ..     153     170 ..     143     171 .. 0.79
   2 !    6.7   0.0    0.0087       6.5      17      36 ..     238     257 ..     228     261 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.016
  HTH_AsnC-type  19 syaeLAervGlSestvlr 36 
                    ++a++A+ + l+e++vl+
     KIR66017.1 153 TVADIAAHLKLTEEEVLE 170
                    479************985 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0087
  HTH_AsnC-type  17 RisyaeLAervGlSestvlr 36 
                     ++ +++Ae++G+S+  v r
     KIR66017.1 238 NLTQSQIAEQIGVSQMHVSR 257
                    57889*********988876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.1   2.4e+03      19      30 ..     153     164 ..     149     168 .. 0.85
   2 ?   13.1   0.2   7.2e-05     0.054      16      40 ..     237     261 ..     223     264 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.1
      HTH_24  19 sqreLAerlglS 30 
                 + +++A +l l+
  KIR66017.1 153 TVADIAAHLKLT 164
                 778999999987 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 7.2e-05
      HTH_24  16 prisqreLAerlglSpstvnrrlkr 40 
                 ++++q+++Ae++g+S+  v+r l r
  KIR66017.1 237 GNLTQSQIAEQIGVSQMHVSRLLAR 261
                 689***************9998876 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0037       2.8      20      44 ..     144     168 ..     139     169 .. 0.87
   2 ?    5.2   0.0     0.018        14      28      50 ..     239     261 ..     227     263 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0037
  HTH_Tnp_ISL3  20 ilelllesrsvkavArqlgvSwtTV 44 
                    l+ l +s +v+++A++l +++  V
    KIR66017.1 144 LLQTLGRSPTVADIAAHLKLTEEEV 168
                   578899999***********99877 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.018
  HTH_Tnp_ISL3  28 rsvkavArqlgvSwtTVwrildr 50 
                    + +++A+q gvS   V r l r
    KIR66017.1 239 LTQSQIAEQIGVSQMHVSRLLAR 261
                   599**********9888888776 PP

>> DUF134  Protein of unknown function  DUF134
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   3.8e-05     0.028      37      78 ..     223     266 ..     213     271 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.8e-05
      DUF134  37 ldele..airlvdyedlkqeeaaklmGiskatlwrlltearkki 78 
                 lde e   + l+ y +l+q + a+ +G+s+  + rll+ a  k+
  KIR66017.1 223 LDEREqkILTLRFYGNLTQSQIAEQIGVSQMHVSRLLARALTKL 266
                 55554226999**************************9998886 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.8   1.3e+03      23      45 ..     151     173 ..     149     177 .. 0.78
   2 ?   12.6   0.1   0.00012     0.089      26      51 ..     241     266 ..     238     268 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.8
      HTH_10  23 rvtlkeLAkelGIskstlsehLr 45 
                   t++++A  l +++  ++e L+
  KIR66017.1 151 SPTVADIAAHLKLTEEEVLEGLE 173
                 56889999999999988888776 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00012
      HTH_10  26 lkeLAkelGIskstlsehLrkaeskl 51 
                  +++A+++G+s++ +s  L +a  kl
  KIR66017.1 241 QSQIAEQIGVSQMHVSRLLARALTKL 266
                 579*******************9998 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.041        31      14      29 ..     150     165 ..     142     169 .. 0.79
   2 ?    7.3   0.0    0.0057       4.3      14      36 ..     237     259 ..     228     262 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.041
                 SSEEHHHHHHHHTS-H CS
       HTH_5  14 gelcvcelaeelglsq 29 
                 ++ +v ++a++l+l++
  KIR66017.1 150 RSPTVADIAAHLKLTE 165
                 6679*********985 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0057
                 SSEEHHHHHHHHTS-HHHHHHHH CS
       HTH_5  14 gelcvcelaeelglsqstvShHL 36 
                 g+l+ +++ae++g+sq  vS+ L
  KIR66017.1 237 GNLTQSQIAEQIGVSQMHVSRLL 259
                 88999***********9999855 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.5   1.9e+03      22      30 ..     153     161 ..     148     165 .. 0.67
   2 ?   11.9   0.1   0.00019      0.15       6      43 ..     222     261 ..     222     262 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.5
      HTH_38  22 slreIArrL 30 
                 ++++IA +L
  KIR66017.1 153 TVADIAAHL 161
                 566777766 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00019
      HTH_38   6 sleeRee.Ierll.aeGlslreIArrLgrspsTIsRElkR 43 
                 +l+eRe+ I +l+   +l++++IA ++g+s   +sR l R
  KIR66017.1 222 TLDEREQkILTLRfYGNLTQSQIAEQIGVSQMHVSRLLAR 261
                 68888755999983555*******************9998 PP

>> Phage_antitermQ  Phage antitermination protein Q
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.7   2.8e+03      81     105 ..     154     178 ..     133     184 .. 0.80
   2 ?   12.4   0.0   0.00015      0.11      60     109 ..     220     269 ..     218     273 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.7
  Phage_antitermQ  81 kraiarklkisekevrkklqkaegf 105
                         ia +lk+ e+ev + l+ a+ +
       KIR66017.1 154 VADIAAHLKLTEEEVLEGLEGARAY 178
                      5678889999999988888877765 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00015
  Phage_antitermQ  60 LkkkrpeelellvdyYvfgvskraiarklkisekevrkklqkaegfiegc 109
                      L + +++e ++l+ ++  ++++ +ia+++++s+++v++ l+ a   + g 
       KIR66017.1 220 LATLDEREQKILTLRFYGNLTQSQIAEQIGVSQMHVSRLLARALTKLRGQ 269
                      667789999*****************************999987666665 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       2.1   1.5e+03      45      61 ..     152     168 ..     126     171 .. 0.72
   2 ?   14.5   0.5   4.5e-05     0.033       1      36 [.     215     260 ..     208     269 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 2.1
      HTH_31  45 avlealaralgldpaer 61 
                  +++ +a  l l+++e+
  KIR66017.1 152 PTVADIAAHLKLTEEEV 168
                 35667777777777776 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 4.5e-05
      HTH_31   1 aLGalLralRera..........GLsqeevAerlgvsestlsrlEq 36 
                 aLG+ L++l er+          +L+q + Ae++gvs+ ++srl  
  KIR66017.1 215 ALGPALATLDEREqkiltlrfygNLTQSQIAEQIGVSQMHVSRLLA 260
                 477777777777788999999988*******************986 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   0.00011     0.083      10      30 ..     240     260 ..     239     264 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
  YdaS_antitoxin  10 gqkaLAealgvsqqaVsqWlk 30 
                     +q++ Ae++gvsq++Vs++l+
      KIR66017.1 240 TQSQIAEQIGVSQMHVSRLLA 260
                     5999**************986 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       4.9   3.7e+03      23      37 ..     154     168 ..     143     176 .. 0.73
   2 ?   12.0   0.2   0.00021      0.16      31      58 ..     238     265 ..     203     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 4.9
                 HHHHHHHCT--HHHH CS
      HTH_37  23 iaeliekrelsqsea 37 
                 +a++ ++++l+ +e+
  KIR66017.1 154 VADIAAHLKLTEEEV 168
                 566777777777766 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00021
                 T--HHHHHHHHT--HHHHHHHHTT--TT CS
      HTH_37  31 elsqseaaqllgiaqPkvsrllrgklsr 58 
                 +l+qs++a+  g++q +vsrll   l++
  KIR66017.1 238 NLTQSQIAEQIGVSQMHVSRLLARALTK 265
                 79*******************9877766 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.42   3.1e+02      10      19 ..     153     162 ..     145     166 .. 0.85
   2 ?    9.0   0.0     0.002       1.5      12      31 ..     242     261 ..     237     263 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.42
                 -HHHHHHHTT CS
    HTH_AraC  10 tiediAdelg 19 
                 t++diA++l 
  KIR66017.1 153 TVADIAAHLK 162
                 89*****986 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.002
                 HHHHHHTTSSHHHHHHHHHH CS
    HTH_AraC  12 ediAdelgfSrsyFsrlFkk 31 
                  +iA++ g+S+++ srl+ +
  KIR66017.1 242 SQIAEQIGVSQMHVSRLLAR 261
                 69**************9765 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.8   3.6e+03       5      16 ..      29      40 ..      27      46 .. 0.82
   2 ?    1.5   0.1      0.36   2.7e+02      12      31 ..     145     164 ..     143     165 .. 0.75
   3 ?    7.8   0.1    0.0039       2.9      18      40 ..     229     260 ..     218     264 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.8
                HHHHHCT-CTTB CS
    HTH_IclR  5 alaiLdalaeap 16
                a+++L+a a+ p
  KIR66017.1 29 AADLLNAMAALP 40
                789999999876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.36
                 -CTTBSS-BHHHHHHHHTS- CS
    HTH_IclR  12 laeapqeltlselArrtglp 31 
                 l + ++  t++++A+++ l+
  KIR66017.1 145 LQTLGRSPTVADIAAHLKLT 164
                 5566666789*****99875 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0039
                 S.........-BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR  18 e.........ltlselArrtglpkStvhRlLq 40 
                           lt s++A+++g++   v+RlL+
  KIR66017.1 229 KiltlrfygnLTQSQIAEQIGVSQMHVSRLLA 260
                 2555555555999*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1965.90
//
Query:       KIR66018.1  [L=236]
Description: hypothetical protein TK50_12250 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-07   29.4   0.5      8e-07   28.9   0.5    1.3  1  ADC       Acetoacetate decarboxylase (ADC)


Domain annotation for each model (and alignments):
>> ADC  Acetoacetate decarboxylase (ADC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.5   4.4e-11     8e-07      27     143 ..      22     139 ..       4     177 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 4.4e-11
                 EE-HHHHHTTSBTTEEECSTSEEEEEEEEEEEECTTTC..EEEEEEEEEEEEETTEE.EEEEEEEEES.SHHHHHHHHHHTT--EEE-EEEEEEETTEE CS
         ADC  27 rtdpeaaaallPepLelaerplvavyfaeypdssfggg..qYneagivvpvryggke.gayilvlwvd.keaalaaGRElwGfPKklAditltregdtl 121
                 +  p+a+ allP++L+  + p v++  + + d + + g   Y+ + +++ v  +g++ g+++++l  +    + aa R   G P   ++ +l+r gdtl
  KIR66018.1  22 PAAPDAVVALLPAGLRAGADPHVFMNQYVVDDETQTSGlgAYSLTYLGICVAGQGAPgGWWTHYLCSSpRMRGYAAAR---GAPVGAGHTWLERRGDTL 117
                 5679***************898888666666665555555****************988999999988889999999*...****************** PP

                 EEEEEETTEEEEEEEEEEEEEE CS
         ADC 122 ggtverggkrlaeltvelkera 143
                 +++ e +g  l++ +v +++  
  KIR66018.1 118 VAQTEVDGMPLIRTRVHVGHTG 139
                 ****************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1802.31
//
Query:       KIR66019.1  [L=529]
Description: phospholipase D [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-11   42.9   0.0    3.4e-06   27.0   0.0    2.3  2  PLDc_2    PLD-like domain
    2.6e-05   24.2   3.5      0.095   12.9   0.6    2.8  2  PLDc      Phospholipase D Active site motif


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   4.8e-06     0.043      24      98 ..      73     156 ..      66     162 .. 0.78
   2 !   27.0   0.0   3.8e-10   3.4e-06      80     118 ..     372     410 ..     285     417 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.8e-06
      PLDc_2  24 eildal.lkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfetll...gslHaKlylid......gktvivGS 98 
                  ++++l  +aa+rgv v+ ll ++  da +  ea+++ l+e +++ag ev + ++     gs H+Kl++ +      +++++ G+
  KIR66019.1  73 PTVAQLfSQAAQRGVVVKGLLWRSHLDALSFSEAENRSLSETICAAGGEVLLDQR-VrrgGSHHQKLVVLRhpedpeRDVAFAGG 156
                 455566366*********99999888999999*****************888554.1346999*****99755555444666665 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 3.8e-10
      PLDc_2  80 gslHaKlylidgktvivGSsNltkrgldlnlElnvvied 118
                   +HaK++++d+ ++ vGS N+++r+++++ El   + d
  KIR66019.1 372 VYVHAKVCVVDDVWASVGSDNFNRRSWTHDSELSCAVLD 410
                 568*****************************9887765 PP

>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1     4e-05      0.36       2      26 ..     131     161 ..     130     163 .. 0.89
   2 !   12.9   0.6   1.1e-05     0.095       5      28 .]     374     397 ..     372     397 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4e-05
                 TBEE---EEEETTT......EEEEE---SSH CS
        PLDc   2 mgthHqKivivDdr......vafvGgaNLcd 26 
                 +g+hHqK v++ +       vaf Gg +Lc 
  KIR66019.1 131 GGSHHQKLVVLRHPedperdVAFAGGIDLCH 161
                 69********9888999999*********95 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.1e-05
                 E---EEEETTTEEEEE---SSHHH CS
        PLDc   5 hHqKivivDdrvafvGgaNLcdgr 28 
                 +H+K  +vDd +a vG+ N+++++
  KIR66019.1 374 VHAKVCVVDDVWASVGSDNFNRRS 397
                 7********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3883.74
//
Query:       KIR66020.1  [L=328]
Description: pirin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-30  103.8   0.0    1.8e-29  102.1   0.0    1.8  2  Pirin_C   Pirin C-terminal cupin domain
    1.8e-29  101.9   0.8    3.9e-29  100.8   0.5    1.8  2  Pirin     Pirin
      9e-05   22.1   2.4       0.11   12.2   0.0    2.9  3  Cupin_2   Cupin domain
  ------ inclusion threshold ------
       0.07   12.7   0.2       0.15   11.7   0.2    1.7  1  Cupin_1   Cupin
       0.12   12.3   0.0       0.22   11.4   0.0    1.4  1  DR2241    DR2241 stabilising domain


Domain annotation for each model (and alignments):
>> Pirin_C  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.2   4.3e+03      18      51 ..      84     121 ..      75     139 .. 0.58
   2 !  102.1   0.0   5.1e-33   1.8e-29       2     103 ..     203     310 ..     202     311 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.2
                 TT-EEEEEEEES-EEESSTT...EEE-TTEEEEE-.SS CS
     Pirin_C  18 egleaavyvleGelevgger...seieeeqlavlg.dg 51 
                  g+e++ y+++G +  +++     +i+++++ +++  +
  KIR66020.1  84 RGFETVTYMIDGIMDHQDTLgggGTITDGDTQWMTaGS 121
                 56778888888877433333444566666666666333 PP

  == domain 2  score: 102.1 bits;  conditional E-value: 5.1e-33
                 EEEEE-TT-EEEEE--TT-EEEEEEEES-EEESSTTEEE-TTEEEEE-SSSEEEEE--S...S-EE.....EEEEEE----S--EEETTEEESSHHHHH CS
     Pirin_C   2 ldltleagaelelplpegleaavyvleGelevggerseieeeqlavlgdgdslvvkaee...kgar.....vlLlaGePlgepvvqyGpfVmntkeeie 92 
                 +++t+++gael+lp++ +++a+vyvl+G+++vg+er++++++qlav g+gd l v+a++   +        + +++G+P++epv++yGpfVmnt++e+ 
  KIR66020.1 203 AHVTVQPGAELSLPWRADFNALVYVLAGRGTVGTERRPFHTGQLAVHGPGDALRVTADAtqdS--NapaleLYIMGGQPIREPVAHYGPFVMNTRDELI 299
                 799****************************************************99986441..244444999************************* PP

                 HHHHHHHTT-T CS
     Pirin_C  93 qafedyregrf 103
                 qafed+++gr+
  KIR66020.1 300 QAFEDFQAGRL 310
                 *********97 PP

>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.5   1.1e-32   3.9e-29       3     108 .]      43     147 ..      41     147 .. 0.94
   2 ?   -2.2   0.0       1.1   4.1e+03      67      84 ..     242     259 ..     218     261 .. 0.55

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 1.1e-32
                 EECCGTCC.TTCCEECTCEECCEEESS.S.ETTEEEET-EEEEEEEBSEEEEEEEECSEEEEEETTS-EEEEETT-EEEEE-TT-EEEEEEE-SS.... CS
       Pirin   3 rvrralgkaaelqsvdpFlfldefdpaelevgeedvigagfpphphrgletvtylleGevehrDslGnkgvirpGdvqwmtAgsGivhsEmneee.... 97 
                  vrra+++   ++++dpF+ ld++++ ++++ge     +g+p+hphrg+etvty+++G ++h+D+lG  g+i+ Gd qwmtAgsG++h E ++e+    
  KIR66020.1  43 PVRRAFAG-VPMHELDPFIHLDQMGEVDYAPGE----PKGTPWHPHRGFETVTYMIDGIMDHQDTLGGGGTITDGDTQWMTAGSGLLHIEAPPEHlvvs 136
                 56777777.567799******************....9************************************************************9 PP

                 SS-EEEEEEEE CS
       Pirin  98 eesleglqlWv 108
                 ++ ++glqlWv
  KIR66020.1 137 GGLFHGLQLWV 147
                 99********8 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
                 TTS-EEEEETT-EEEEE- CS
       Pirin  67 slGnkgvirpGdvqwmtA 84 
                 ++G+ +v  pGd+ ++tA
  KIR66020.1 242 HTGQLAVHGPGDALRVTA 259
                 355666666666666665 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.3   0.00037       1.3       2      33 ..      67     100 ..      66     126 .. 0.76
   2 ?   -2.6   0.0       1.3   4.7e+03      20      30 ..     177     187 ..     165     192 .. 0.76
   3 !   12.2   0.0     3e-05      0.11       2      52 ..     204     252 ..     203     267 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00037
                 EEEEETTE..EEEEECSSSEEEEEEEEESEEEEE CS
     Cupin_2   2 lvelppGe..sapshrHpgedeffyVleGegelt 33 
                  v ++pGe   +p+h H+g + + y ++G +  +
  KIR66020.1  67 EVDYAPGEpkGTPWHPHRGFETVTYMIDGIMDHQ 100
                 68899***95566******99********87665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
                 EEEEEEEESEE CS
     Cupin_2  20 deffyVleGeg 30 
                  +++ V+ Ge+
  KIR66020.1 177 GALIRVIAGEV 187
                 37889999987 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 3e-05
                 EEEEETTEEEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT CS
     Cupin_2   2 lvelppGesapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpag 52 
                 +v+++pG++    +  +  +++yVl G+g++    e+ + ++G++++  +g
  KIR66020.1 204 HVTVQPGAELSLPWRADFNALVYVLAGRGTVG--TERRPFHTGQLAVHGPG 252
                 689*****77777766656**********976..55666666665544443 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   4.2e-05      0.15      26      69 ..     193     236 ..     182     320 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.2e-05
                 TTTHSSTEEEEEEEE.TTEEEEEEEESSS-EEEEEEESEEEEEE CS
     Cupin_1  26 pglntlgisaarvdlepgglllPhyhpnateiayvlqGegrvgf 69 
                 pg  +  i++a v ++pg+ l++ +    + ++yvl G+g+vg+
  KIR66020.1 193 PGSTHTPITIAHVTVQPGAELSLPWRADFNALVYVLAGRGTVGT 236
                 777788899999*****************************885 PP

>> DR2241  DR2241 stabilising domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.1e-05      0.22      51      83 ..       6      38 ..       3      51 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.1e-05
                E-SHHHHHHHTSB-TTS-B-SSTTBS---SSEE CS
      DR2241 51 yddpedaRelvrldeegryRPlktaptlprGWr 83
                +dd + + +l rlde+ ryRP++ + t p+G++
  KIR66020.1  6 VDDVLVLPRLPRLDESTRYRPVRKLTTAPSGYE 38
                566677778889*******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2423.68
//
Query:       KIR66021.1  [L=159]
Description: MarR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-14   51.6   0.6    2.6e-12   46.5   0.1    2.3  2  MarR_2    MarR family
    2.9e-10   39.9   0.0    5.4e-10   39.0   0.0    1.5  1  MarR      MarR family
    5.1e-05   23.7   0.0    9.4e-05   22.8   0.0    1.5  1  HTH_27    Winged helix DNA-binding domain
  ------ inclusion threshold ------
      0.015   15.6   0.0      0.028   14.8   0.0    1.5  1  Rrf2      Transcriptional regulator


Domain annotation for each model (and alignments):
>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.1   5.7e-16   2.6e-12       3      62 .]      37      96 ..      35      96 .. 0.97
   2 ?    3.4   0.0     0.016        72      44      62 .]     100     119 ..      99     119 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 5.7e-16
                --HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2  3 ltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                l+ a+++vL  L  +pg++l++gela rl  s+s++++ +  ++++GLv r+++ eD+R+
  KIR66021.1 37 LSFADYHVLVLLSEAPGQRLRMGELAGRLVFSPSRLTYQITTMQKRGLVARQSCAEDGRG 96
                8899*******************************************************7 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.016
                 HHHHTTSEEEE.ESSSSSSS CS
      MarR_2  44 rLvaaGLverr.pgpeDkRa 62 
                  L aaGL+  r ++p+++R+
  KIR66021.1 100 VLTAAGLLALReAAPHHLRS 119
                 5899****888799999995 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   1.2e-13   5.4e-10       4      57 ..      40      95 ..      37      97 .. 0.94

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 1.2e-13
                HHHHHHHHHHHSTTEEHH..HHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTT CS
        MarR  4 tqfviLrilyeqgplsvs..eLakklgvskstvtrvldrLekkGlieRskspeDrR 57
                + +++L++l+e +++++   eLa +l  s+s +t +++++ k+Gl+ R+ + eD R
  KIR66021.1 40 ADYHVLVLLSEAPGQRLRmgELAGRLVFSPSRLTYQITTMQKRGLVARQSCAEDGR 95
                679***********998888***********************************9 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.1e-08   9.4e-05       7      68 .]      43     105 ..      37     105 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.1e-08
      HTH_27   7 lvLhlir.hrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                  vL l+   ++ r +  +l+grl ++ s   y +  + ++GLv r+ +++d+r +   lT++G
  KIR66021.1  43 HVLVLLSeAPGQRLRMGELAGRLVFSPSRLTYQITTMQKRGLVARQSCAEDGRGSEAVLTAAG 105
                 45555555688999999*******************************************998 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   6.2e-06     0.028      11      58 ..      42      88 ..      31     103 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.2e-06
                HHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        Rrf2 11 lhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksv 58
                 h+l+ L++ ++++ +++ e+a r   sps l   +++++k glv  +
  KIR66021.1 42 YHVLVLLSEAPGQR-LRMGELAGRLVFSPSRLTYQITTMQKRGLVARQ 88
                59999999999998.******************************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1222.06
//
Query:       KIR66022.1  [L=175]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-26   91.7   0.0    8.3e-26   91.3   0.0    1.1  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
    1.5e-09   38.1   0.0    1.9e-09   37.8   0.0    1.1  1  Acetyltransf_1  Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
       0.15   11.8   3.5        1.5    8.5   3.5    2.1  1  Acetyltransf_8  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.0   1.4e-29   8.3e-26       2     137 ..      11     145 ..      11     146 .. 0.92

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 1.4e-29
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmrylpe.pltleeaeewlera..waeeseeegygwaivlkdtgv.iGsvglrdleeedeeaelgymlapsfw 92 
                     +lLrp++++D++a+++ + dp+v+++ p+ + +++ a+ew++r+  w +   ++   +a+ ++++ + +Gsv+l  + + +  a++gy+  p+++
      KIR66022.1  11 VLLRPWRAADAPAVLAALRDPAVTTWNPQgDMDEARAREWVRRRadWSA---GDHASLAVADPGDTAlLGSVSLSGIGGGH--ANIGYWTVPAAR 100
                     58************989*********7777************8877765...477889**88555566*********9997..9*********** PP

  Acetyltransf_3  93 gkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     g+G+at avr l+ + f+ lgl+r++  ++  N+aS rv+e++G+
      KIR66022.1 101 GRGVATAAVRRLTGWGFAMLGLHRVELFHAVANPASCRVAERAGY 145
                     *******************************************96 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   3.2e-13   1.9e-09      16     117 .]      46     145 ..      25     145 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 3.2e-13
                     HHHHHHHHHHHHHHSTTC.EEEEEEETTE.EEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHH CS
  Acetyltransf_1  16 nedaseeefeesfsleae.gllvaeedge.liGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveednda 107
                     + ++++++++++ s  +  +l va  +++ l+G +sl+ i     g+a i +++  p++rg+G+++a ++ l  + +   g+++++l + + n a
      KIR66022.1  46 RAREWVRRRADW-SAGDHaSLAVADPGDTaLLGSVSLSGIGG---GHANI-GYWTVPAARGRGVATAAVRRLTGWGFAMlGLHRVELFHAVANPA 135
                     333444445555.33333356666666666**********99...88888.9******************************************* PP

                     HHHHHHHTTE CS
  Acetyltransf_1 108 airlYeklGF 117
                     ++r+ e+ G+
      KIR66022.1 136 SCRVAERAGY 145
                     ********98 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.5   0.00025       1.5      81     141 ..      86     149 ..      17     152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00025
                     EEEEEES...SHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEE CS
  Acetyltransf_8  81 GiHllig...eaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekek 141
                     G H  ig    ++arg+g++ta +r+l+ + fa  +  rv +   v N ++ r+ e+aG+  e+
      KIR66022.1  86 GGHANIGywtVPAARGRGVATAAVRRLTGWGFAMLGLHRVELFHAVANPASCRVAERAGYPLEG 149
                     55666665555789*********************************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1251.34
//
Query:       KIR66023.1  [L=82]
Description: flavin reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 576.10
//
Query:       KIR66024.1  [L=256]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-06   26.4   0.0    8.9e-06   25.7   0.0    1.4  1  HTH_3           Helix-turn-helix
    4.7e-05   23.4   0.1    0.00011   22.2   0.1    1.6  1  HTH_28          Helix-turn-helix domain
    7.7e-05   22.6   0.1    0.00016   21.6   0.1    1.5  1  HTH_29          Winged helix-turn helix
    8.4e-05   22.3   0.5     0.0002   21.1   0.1    1.8  2  HTH_23          Homeodomain-like domain
    0.00032   20.8   0.2      0.001   19.2   0.0    2.0  2  HTH_17          Helix-turn-helix domain
     0.0013   18.8   0.5     0.0044   17.0   0.5    1.9  1  HTH_35          Winged helix-turn-helix DNA-binding
     0.0025   17.7   0.0     0.0048   16.8   0.0    1.4  1  HTH_36          Helix-turn-helix domain
     0.0026   18.1   1.4     0.0026   18.1   1.4    2.9  3  HTH_31          Helix-turn-helix domain
     0.0072   16.3   0.0      0.012   15.6   0.0    1.3  1  HTH_19          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.027   14.6   0.0      0.053   13.6   0.0    1.4  1  Phage_CI_repr   Bacteriophage CI repressor helix-turn-helix d
      0.027   14.3   0.0      0.056   13.3   0.0    1.5  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
      0.038   14.4   0.0      0.069   13.6   0.0    1.5  1  HTH_26          Cro/C1-type HTH DNA-binding domain
      0.058   13.2   0.1       0.12   12.2   0.1    1.4  1  HTH_38          Helix-turn-helix domain
       0.11   12.3   0.6       0.68    9.8   0.1    2.2  2  HTH_8           Bacterial regulatory protein, Fis family
       0.15   11.6   0.0       0.28   10.8   0.0    1.4  1  HTH_24          Winged helix-turn-helix DNA-binding
       0.19   11.8   0.6        1.7    8.6   0.0    2.6  3  HTH_Crp_2       Crp-like helix-turn-helix domain
       0.21   11.7   0.0       0.34   11.0   0.0    1.3  1  HTH_Tnp_1_2     Helix-turn-helix of insertion element transpo


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   8.5e-09   8.9e-06       2      53 ..       6      57 ..       5      59 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 8.5e-09
                HHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  2 kelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsld 53
                + ++   g s+e LA++lGv r t++r+ n +r+P  +  ++ a+aLg +++
  KIR66024.1  6 RLALRDSGHSIESLAARLGVDRKTVARWLNEDRIPHARHRVAAAEALGQPIR 57
                56666789******************************99999999998776 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1     1e-07   0.00011       5      34 ..       4      35 ..       3      36 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1e-07
      HTH_28  5 iiklla..aGhsvreaArelgisrrtvyrWik 34
                +++l++  +Ghs+  +A++lg++r tv rW++
  KIR66024.1  4 ALRLALrdSGHSIESLAARLGVDRKTVARWLN 35
                567777445*********************97 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   1.5e-07   0.00016       5      34 ..       7      35 ..       4      36 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.5e-07
      HTH_29  5 llllaeGvstvsqiAkllglsrrtvyrwlk 34
                l+l + G+s +  +A++lg++r+tv rwl+
  KIR66024.1  7 LALRDSGHS-IESLAARLGVDRKTVARWLN 35
                67889***8.******************97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   1.9e-07    0.0002      11      39 ..       5      35 ..       3      38 .. 0.87
   2 ?   -2.6   0.0       5.1   5.4e+03      14      23 ..      48      59 ..      43      59 .. 0.57

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.9e-07
      HTH_23 11 llllae..GlsvreIAreLgvsrrTvyrwlk 39
                l+l+++  G+s++  A++Lgv r Tv rwl+
  KIR66024.1  5 LRLALRdsGHSIESLAARLGVDRKTVARWLN 35
                56666557*********************97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.1
      HTH_23 14 lae..GlsvreI 23
                +ae  G+++r+I
  KIR66024.1 48 AAEalGQPIRDI 59
                222348888776 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   9.8e-07     0.001       4      32 ..      16      44 ..      15      52 .. 0.90
   2 ?   -2.5   0.0       5.6   5.9e+03       4      11 ..     221     228 ..     220     230 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 9.8e-07
      HTH_17  4 veEaAelLgvsrstvyrlirrgelpaaki 32
                +e +A+ Lgv r+tv r++++ ++p+a++
  KIR66024.1 16 IESLAARLGVDRKTVARWLNEDRIPHARH 44
                67789********************9986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.6
      HTH_17   4 veEaAelL 11 
                 +e++A+lL
  KIR66024.1 221 PEDVAALL 228
                 799**999 PP

>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.5   4.2e-06    0.0044      10      61 ..       8      62 ..       4      80 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.2e-06
      HTH_35 10 aLrkrgttLaalsreaglssstlsnaltrp.wpkgEalI..AeaLgvppeeiwPs 61
                aLr  g ++ +l+ ++g  ++t+++ l+    p++  ++  AeaLg p + iwP+
  KIR66024.1  8 ALRDSGHSIESLAARLGVDRKTVARWLNEDrIPHARHRVaaAEALGQPIRDIWPD 62
                899************************98655666555522799**********8 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   4.6e-06    0.0048      27      48 ..      15      36 ..       7      36 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.6e-06
      HTH_36 27 sqetlakrlglsknTvsraike 48
                s e la+rlg++++Tv r+++e
  KIR66024.1 15 SIESLAARLGVDRKTVARWLNE 36
                7899****************96 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.4   2.5e-06    0.0026       6      57 ..       5      55 ..       3      60 .. 0.87
   2 ?    1.4   0.1      0.39   4.1e+02      41      59 ..     158     176 ..     148     181 .. 0.80
   3 ?   -1.6   0.0       3.5   3.7e+03      37      52 ..     215     229 ..     202     237 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.5e-06
      HTH_31  6 LralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                Lr + + +G s e +A+rlgv + t+ r+ +  r +p  +   a+a+alg +
  KIR66024.1  5 LRLALRDSGHSIESLAARLGVDRKTVARWLNEDR-IPHARHRVAAAEALGQP 55
                454445779*************************.7************9965 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.39
      HTH_31  41 rpspavlealaralgldpa 59 
                 ++ +++leal+ a+ ++  
  KIR66024.1 158 EVMRGQLEALVAACAAPHV 176
                 456889********99864 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3.5
      HTH_31  37 Grrgrpspavlealar 52 
                 G+  +  p++++al++
  KIR66024.1 215 GQL-VTDPEDVAALLT 229
                 555.467788888775 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.2e-05     0.012       3      56 ..       4      56 ..       2      60 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
      HTH_19  3 rLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidl 56
                 L+ a +  g ++e la rlg++r+  + + n+ +  p a+   ++aealg+++
  KIR66024.1  4 ALRLALRDSGHSIESLAARLGVDRKTVARWLNEDR-IPHARHRVAAAEALGQPI 56
                7899999999***********************99.999***9********996 PP

>> Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     5e-05     0.053      17      53 ..      18      55 ..      13      60 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5e-05
                   HHHCCTT--HHHHHHHHHSSS--.HHHHHHHHHHH--- CS
  Phage_CI_repr 17 eLAdlLgiakssvstwvrRdffP.gdvvvtcaletdts 53
                    LA++Lg+ +++v+ w   d++P +   v+ a++++ +
     KIR66024.1 18 SLAARLGVDRKTVARWLNEDRIPhARHRVAAAEALGQP 55
                   7**********************555556666666655 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.3e-05     0.056      12      37 ..      17      41 ..      12      53 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.3e-05
  YdaS_antitoxin 12 kaLAealgvsqqaVsqWlkgkkqvpa 37
                      LA +lgv +++V +Wl+   ++p 
      KIR66024.1 17 ESLAARLGVDRKTVARWLNE-DRIPH 41
                    67****************94.66664 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.5e-05     0.069       2      34 ..       5      37 ..       4      60 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.5e-05
      HTH_26  2 LrelmadrgitkseLargtgisaatlsrlvkgk 34
                Lr +++d g ++ +La ++g+++ t++r++++ 
  KIR66024.1  5 LRLALRDSGHSIESLAARLGVDRKTVARWLNED 37
                8999***************************86 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00011      0.12      15      39 ..       8      32 ..       6      35 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
      HTH_38 15 rllaeGlslreIArrLgrspsTIsR 39
                +l++ G+s+   A rLg+++ T++R
  KIR66024.1  8 ALRDSGHSIESLAARLGVDRKTVAR 32
                58899*******************9 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00064      0.68      10      37 ..       5      32 ..       3      36 .. 0.89
   2 ?   -0.1   0.0      0.77   8.1e+02      20      29 ..      44      53 ..      41      60 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00064
                HHHHHHHTTT-HHHHHHHHTS-HHHHHH CS
       HTH_8 10 IeaALertgGnkskAArlLGisRrtLyr 37
                +  AL+ +g  +   A +LG+ R+t+ r
  KIR66024.1  5 LRLALRDSGHSIESLAARLGVDRKTVAR 32
                6779*********************987 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.77
                -HHHHHHHHT CS
       HTH_8 20 nkskAArlLG 29
                ++ +AA+ LG
  KIR66024.1 44 HRVAAAEALG 53
                7889*****9 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00026      0.28       9      36 ..       5      32 ..       3      36 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
      HTH_24  9 LelLqknprisqreLAerlglSpstvnr 36
                L+l  ++++ s+  LA rlg+ + tv r
  KIR66024.1  5 LRLALRDSGHSIESLAARLGVDRKTVAR 32
                788899********************98 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0017       1.7      24      44 ..      16      36 ..       5      36 .. 0.89
   2 ?   -0.4   0.1       1.1   1.1e+03      43      67 ..     125     152 ..     122     152 .. 0.73
   3 ?   -2.7   0.0       5.9   6.2e+03      44      63 ..     202     222 ..     197     228 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0017
                HHHHHHHTTSSHHHHHHHHHH CS
   HTH_Crp_2 24 qeelAsmlGltretvsrilse 44
                 e lA++lG+ r tv r l+e
  KIR66024.1 16 IESLAARLGVDRKTVARWLNE 36
                589**************9986 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.1
                 HHHHHTTSEEE.T.EE.EEES-HHHHHH CS
   HTH_Crp_2  43 seLkreglisr.g.rr.irildleaLra 67 
                 ++L r+ +++r    r   + d  aLr+
  KIR66024.1 125 NRLARQDILRRdDpPRlTAVIDEGALRR 152
                 7899999999633446566889888885 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.9
                 HHHHTTSEEET..EEEEES-HH CS
   HTH_Crp_2  44 eLkreglisrg..rririldle 63 
                 eL+ +g+++++  +   ++d+e
  KIR66024.1 202 ELRTAGYVDTQldG-QLVTDPE 222
                 68888888843213.5667766 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00033      0.34      27      50 ..      14      37 ..       3      49 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00033
                 S-HHHHHHHHTS-HHHHHHHHH-H CS
  HTH_Tnp_1_2 27 ltldeiaeevgvsrsTlykWkkkk 50
                  +++ +a+ +gv+r+T  +W+++ 
   KIR66024.1 14 HSIESLAARLGVDRKTVARWLNED 37
                 6899*****************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1877.14
//
Query:       KIR66025.1  [L=69]
Description: regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-21   75.2   0.7      4e-21   74.8   0.7    1.1  1  DUF397    Domain of unknown function (DUF397)


Domain annotation for each model (and alignments):
>> DUF397  Domain of unknown function (DUF397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.7   2.2e-25     4e-21       1      52 [.       6      58 ..       6      59 .. 0.90

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 2.2e-25
      DUF397  1 atWrKSsySgggggnCVEvaalpda......vavRDSkdpdgpvLtftpaewaaFlag 52
                a+Wr S++S+g+gg+CVEv     a      v vRDSkd++g++Ltf pa+w++F+a 
  KIR66025.1  6 ARWRTSTRSSGNGGDCVEV-----AdnlpgvVLVRDSKDRAGATLTFAPAAWRGFVAR 58
                69*****************.....444455689***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       174  (0.00970495); expected 358.6 (0.02)
Passed bias filter:                      139  (0.0077528); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 554.51
//
Query:       KIR66026.1  [L=195]
Description: hypothetical protein TK50_12295 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-05   23.4  11.7    0.00013   21.6  11.6    2.1  1  Gly-zipper_YMGG  YMGG-like Gly-zipper
  ------ inclusion threshold ------
      0.091   13.1   0.9      0.091   13.1   0.9    2.4  2  Romo1            Reactive mitochondrial oxygen species modula
       0.22   11.3   2.3       0.27   11.0   2.3    1.1  1  FA_desaturase    Fatty acid desaturase
       0.41   10.5  21.1       0.22   11.3   2.8    3.1  3  Gly-zipper_OmpA  Glycine-zipper domain
          3    7.9  20.6        2.2    8.4   4.6    2.7  2  Gly-zipper_Omp   Glycine zipper
        6.5    5.4   4.7        8.5    5.0   4.7    1.1  1  DUF2207          Predicted membrane protein (DUF2207)
        7.3    6.9  12.2        9.5    6.5  11.2    1.7  2  DUF2530          Protein of unknown function (DUF2530)
        8.8    6.4  12.8         12    6.0  12.8    1.2  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6  11.6   5.8e-08   0.00013       2      45 ..      96     147 ..      92     148 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 5.8e-08
                      ...XXXXXXXXXXXXXXXXXX.XXXXX.......XXXXXXXXXXXXXXXXX- CS
  Gly-zipper_YMGG   2 gavrGAaiGAaaGAvvGaliG.sgggk.......GAaiGAaaGalaGgaiGa 45 
                      +a+ GA++GA+ G  +G l+G   +g        G +iGA +Ga++G++++a
       KIR66026.1  96 AALIGAGTGAWFGLFIGLLFGiFTAGSwiavilvGLVIGAIWGAVFGAVAHA 147
                      578899999************944432244444569************9986 PP

>> Romo1  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   4.1     0.024        55       8      29 ..      99     120 ..      93     123 .. 0.75
   2 ?   13.1   0.9   4.1e-05     0.091      11      50 ..     128     166 ..     122     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.024
       Romo1   8 mGalmGaaVGlaiGllfGtfsa 29 
                  Ga  Ga  Gl iGllfG f+a
  KIR66026.1  99 IGAGTGAWFGLFIGLLFGIFTA 120
                 4677777888888888887765 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.1e-05
       Romo1  11 lmGaaVGlaiGllfGtfsalryglrgrgllrtlgksmlgs 50 
                 l+G ++G++ G++fG ++  ++g ++r++ +  +  +++ 
  KIR66026.1 128 LVGLVIGAIWGAVFGAVAHAMSG-GQRDFTSASSLRAAQY 166
                 79***************999999.8888877666555555 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.3   0.00012      0.27     147     199 ..     102     159 ..      56     172 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
  FA_desaturase 147 wlglwlalllllglall......lwlvplllllfllalvlnyveHyggdwgerqvetsa 199
                    ++g+w++l+  l ++ +      +++++ l++++++  v+  v H+ ++ g+r++    
     KIR66026.1 102 GTGAWFGLFIGLLFGIFtagswiAVILVGLVIGAIWGAVFGAVAHA-MSGGQRDFTSAS 159
                    2444444444333333344525544444444445555555999998.566666665554 PP

>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.8         2   4.4e+03      26      33 ..      36      43 ..      30      49 .. 0.69
   2 ?   10.5   3.1   0.00018      0.41      25      43 ..      93     111 ..      86     112 .. 0.83
   3 ?   11.3   2.8   9.7e-05      0.22       6      28 ..     129     151 ..     128     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2
  Gly-zipper_OmpA 26 GtGAaiGA 33
                     G G  +GA
       KIR66026.1 36 GHGPQVGA 43
                     66777887 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00018
  Gly-zipper_OmpA  25 aGtGAaiGAasGavaGllr 43 
                      +G+ A iGA++Ga +Gl+ 
       KIR66026.1  93 TGRAALIGAGTGAWFGLFI 111
                      7888************986 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 9.7e-05
  Gly-zipper_OmpA   6 vGAalGAaaGAavGaitGsaGtG 28 
                      vG ++GA+ GA++Ga++++ + G
       KIR66026.1 129 VGLVIGAIWGAVFGAVAHAMSGG 151
                      68889999999999998776665 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.6   0.00097       2.2      14      39 ..      89     112 ..      75     113 .. 0.69
   2 ?    8.0  11.6    0.0012       2.7       2      38 ..     104     145 ..     103     153 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00097
  Gly-zipper_Omp  14 GgavggrgtGaliGAavGaavGgliG 39 
                     G    ++g+ aliGA+ Ga  G  iG
      KIR66026.1  89 GRL--TTGRAALIGAGTGAWFGLFIG 112
                     333..3479**********9998887 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0012
  Gly-zipper_Omp   2 GaaiGAaaGaliGgavggr.....gtGaliGAavGaavGgli 38 
                     Ga+ G ++G l+G  + g+      +G +iGA+ Ga+ G++ 
      KIR66026.1 104 GAWFGLFIGLLFGIFTAGSwiaviLVGLVIGAIWGAVFGAVA 145
                     9*************9988776666566666666666666654 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   4.7    0.0038       8.5     381     430 ..      96     144 ..      90     165 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0038
     DUF2207 381 kklsalglgliilglilillallllvlllvfllilllillliaiivlllf 430
                 + l+ +g+g+++ ++i++l++++++++ ++   +++l+++ i  +v+   
  KIR66026.1  96 AALIGAGTGAWFGLFIGLLFGIFTAGS-WIAVILVGLVIGAIWGAVFGAV 144
                 557788888999999999999988876.4444444444444444444333 PP

>> DUF2530  Protein of unknown function (DUF2530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   1.8      0.26   5.9e+02      14      54 ..      72     114 ..      67     120 .. 0.63
   2 ?    6.5  11.2    0.0042       9.5       8      71 ..      90     153 ..      84     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.26
     DUF2530  14 rpvivvgtllWlvalvvllvvgdales..wlpvclaGlvvGll 54 
                 ++ ++vgt l lv +v+  +++++ +   +   +  Gl +Gll
  KIR66026.1  72 EHTAIVGTNLTLVETVLGRLTTGRAALigAGTGAWFGLFIGLL 114
                 6788899999999888876665544432244445556666655 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0042
     DUF2530   8 rrLtdprpvivvgtllWlvalvvllvvgdaleswlpvclaGlvvGllGlaiflwQRrAaRrGsr 71 
                 r +t     i +gt +W+  ++ ll+ + +  sw+ v l+Glv+G++  a+f    +A   G+r
  KIR66026.1  90 RLTTGRAALIGAGTGAWFGLFIGLLFGIFTAGSWIAVILVGLVIGAIWGAVFGAVAHAMSGGQR 153
                 55666677899************************************99999988888777776 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  12.8    0.0053        12      31      96 ..      89     153 ..      81     169 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0053
  Phage_holin_3_6  31 kragsgagllgaagvlallalllllval.alalaalwlaalivaavllvlagvlalvglkklkkakp 96 
                       r+ +g ++l++ag  a ++l++ l++  + a   +w+a ++v++v  ++ g++  +  +++++ ++
       KIR66026.1  89 GRLTTGRAALIGAGTGAWFGLFIGLLFGiFTAG--SWIAVILVGLVIGAIWGAVFGAVAHAMSGGQR 153
                      577888888888888888888876666624444..89999999988877776666665566666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 1525.25
//
Query:       KIR66027.1  [L=259]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-64  215.2   0.1    1.1e-63  214.9   0.1    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    7.1e-49  165.9   0.0    8.3e-49  165.7   0.0    1.1  1  adh_short     short chain dehydrogenase
      1e-10   41.8   0.2    2.2e-10   40.8   0.2    1.5  1  KR            KR domain
  ------ inclusion threshold ------
      0.012   15.0   0.1      0.018   14.5   0.1    1.4  1  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.9   0.1   2.5e-67   1.1e-63       3     233 ..      16     251 ..      13     252 .. 0.96

  Alignments for each domain:
  == domain 1  score: 214.9 bits;  conditional E-value: 2.5e-67
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                    sgIG+a A ++a+eGa+vv+++l++++ ++++++ +e+ g++ v ++cD+tde++vea+++++ ++fg+lD+l+n ag+  +   p+++++ e +d
    KIR66027.1  16 DSGIGQASAIEFAREGADVVVHYLHDRQgAEHTRDRVERAGRRaVvMRCDITDEQDVEAMFDAAIAEFGSLDVLINDAGVDAS-GVPVADLDTETWD 111
                   49***************************99999999999977546************************************9.************* PP

                   HHHHHHTHHHHHHHHHHHHHCTSC...CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHH CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeg...gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelle 190
                   ra+ +n+y++f ++++++++ +++   g+i+n++s+++e++ ++ + y ++K+al  ++++lA e++p    vN + pg++ T+ ++++ + ++ le
    KIR66027.1 112 RAIRTNVYGAFFCSRRFVQHRRDQgghGKIINITSIHQEVARAGGSDYDTSKGALLEFAKSLALEVAPMHLNVNNIGPGMVLTPFNQKAIDDPAYLE 208
                   *******************88887799**********************************************************9999999***** PP

                   HHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 191 elearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   e  +++p +r+++pee++++a+fLasd+a y+tG+t ++DgGl
    KIR66027.1 209 EQVQSIPWKRAAEPEEIGRLAVFLASDDADYVTGSTYFMDGGL 251
                   ******************************************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.7   0.0   1.9e-52   8.3e-49       2     192 ..       9     202 ..       8     205 .. 0.96

  Alignments for each domain:
  == domain 1  score: 165.7 bits;  conditional E-value: 1.9e-52
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCSH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfselse 98 
                 ++l+tG +sGIG+a a e+a+eGa+vvv +    + +e++ + ++++g++a+++++D+td+++vea++++a++++g+ldvL+n AG+ +  +p+++l+ 
  KIR66027.1   9 TALITGSDSGIGQASAIEFAREGADVVVhYLHDRQGAEHTRDRVERAGRRAVVMRCDITDEQDVEAMFDAAIAEFGSLDVLINDAGVdASGVPVADLDT 107
                 89**************************9999999999*************************************************98899******* PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCT CS
   adh_short  99 eewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelre 192
                 e+w+r i +N+ g+f ++r ++++   ++  G+I+n++S++ +v+ ag++ Y +sK+a+  +++sla e+ap   +vn++ PG+v T++++++ +
  KIR66027.1 108 ETWDRAIRTNVYGAFFCSRRFVQHRRdQGGHGKIINITSIHQEVARAGGSDYDTSKGALLEFAKSLALEVAPMHLNVNNIGPGMVLTPFNQKAID 202
                 ************************6668899***********************************************************99765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.2   4.9e-14   2.2e-10       2     125 ..       9     130 ..       8     176 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 4.9e-14
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------.-TTT CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdk.llee 99 
                 t litG   g+G++ a   a++ga  +v    +   ++ ++++ +++e+ g +  v+++D++d+++vea+++++ ae++++   i+ Agv + + ++++
  KIR66027.1   9 TALITGSDSGIGQASAIEFAREGADVVVHYLHD---RQGAEHTRDRVERAGRRAVVMRCDITDEQDVEAMFDAAIAEFGSLDVLINDAGVDASGvPVAD 104
                 579**********************99988777...445556678999******************************************876438*** PP

                 --HHHHHHHHTTTTHHHHHHHHHTTT CS
          KR 100 mtaedleqvlapKvkGawnLhelled 125
                 +++e+++++++  v Ga    + + +
  KIR66027.1 105 LDTETWDRAIRTNVYGAFFCSRRFVQ 130
                 ****************9877666655 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1     4e-06     0.018       1      62 [.      10      78 ..      10     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4e-06
                EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledl......elveldltdrsalerlfke 62
                +l+tG    iG+a + +++++g + v+   +++++ ++ r++         ++++d+td++++e++f+ 
  KIR66027.1 10 ALITGSDSGIGQASAIEFAREGADvVVHYLHDRQGAEHTRDRVEragrraVVMRCDITDEQDVEAMFDA 78
                59********************885333334434444443333369***99***********9999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2070.35
//
Query:       KIR66028.1  [L=466]
Description: endoglucanase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-65  222.4   2.4    1.5e-65  222.0   2.4    1.1  1  Glyco_hydro_6  Glycosyl hydrolases family 6
    7.5e-23   80.8   6.2    2.1e-22   79.3   6.2    1.8  1  CBM_2          Cellulose binding domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_6  Glycosyl hydrolases family 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.0   2.4   1.6e-69   1.5e-65       4     298 ..      46     303 ..      42     308 .. 0.90

  Alignments for each domain:
  == domain 1  score: 222.0 bits;  conditional E-value: 1.6e-69
  Glyco_hydro_6   4 kaakqaaaklda.alaakaakvakvptavWldriakieelrkaldeavaqakaegavvvlVvYnlPgRDCaaqaSaGelasaaalekYkeyidaia 98 
                    +aa+++aa+  + ++a    ++a+vp+  W+++ ++++++r+++d++v +a+a+g+++ lVvYn+P+RDC + aS G++++++a   Y++++d++a
     KIR66028.1  46 SAARWVAANPGDsRAAVIRDRIASVPQGRWFTT-TNTSTVRSEVDQFVGAAAAAGKIPILVVYNIPNRDC-SGASTGGAPNHTA---YRQWVDQVA 136
                    556655544433377788899***********6.56799*******************************.************9...********* PP

  Glyco_hydro_6  99 agigkysdlravvvlEpDslanlvtnlsvekCaeaaaaaerlaglayAvkkLkal.pnvavYlDaghsgwlgWeknleeaaellakvvkaaagvak 193
                    ag++    + a++vlEpD l+ ++      +C++++++ae +a +ayA kkLk   ++ +vY Daghs+wl+    ++e+a++l+     a  +++
     KIR66028.1 137 AGLAG---RPATIVLEPDVLPIMT------SCQNSSQQAETRASMAYAGKKLKSGsSQAKVYFDAGHSAWLA----PAEIASRLNG----ADIANS 215
                    *****...***************7......9*********************9853899*********6655....69999***99....666789 PP

  Glyco_hydro_6 194 vdGfalnvsnynateeateanksvdekkYakalskalvaaglpalahfviDtsRnGkqgkerkdageWCNppgrglGerpttstgdplvdaylWvK 289
                    +dG++lnvsny++t+         ++++Yak++ +a    g++   ++viDtsRnG++++     +eWC ppgr++G+++tt+tgd+++da+lWvK
     KIR66028.1 216 ADGISLNVSNYRTTA---------ESVSYAKQVIAAT---GVSR-LKAVIDTSRNGNGPA----GSEWCDPPGRAIGTPSTTATGDSAIDAFLWVK 294
                    ***************.........9*****9998766...7766.689*********976....689***************************** PP

  Glyco_hydro_6 290 ppGeSDGtc 298
                     pGe+DG  
     KIR66028.1 295 LPGEADGCI 303
                    *******65 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   6.2   2.4e-26   2.1e-22       1     101 []     364     465 ..     364     465 .. 0.89

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 2.4e-26
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE-..-TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS-.---S--EE CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtl..pagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsn.saptsftv 96 
                 +++t++  ++W +Gfta+++++N g + +n W++++ +  +ag r+ + Wn+++sqsG+++ ++nv wNg++++ g++s+Gfqg+ +gs+ +ap+ ft+
  KIR66028.1 364 CTVTFTP-NTWAGGFTAELRITNGGGA-LNAWSLSFGFpaSAGVRLSSGWNGEWSQSGDTLLVRNVAWNGSLPANGTVSVGFQGTFSGSSlPAPSGFTL 460
                 5666665.59*************8876.69********444678999**************************************998643899***** PP

                 TTEE- CS
       CBM_2  97 nGaaC 101
                 nG+ C
  KIR66028.1 461 NGSRC 465
                 ***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3397.94
//
Query:       KIR66029.1  [L=193]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-14   53.9   0.2    2.3e-14   53.2   0.2    1.4  1  HTH_3          Helix-turn-helix
    6.3e-14   52.1   5.7    1.4e-13   50.9   5.7    1.6  1  HTH_31         Helix-turn-helix domain
    1.3e-12   47.2   0.0      2e-12   46.7   0.0    1.3  1  Cupin_2        Cupin domain
    1.6e-09   38.0   0.2    2.9e-09   37.2   0.0    1.5  2  HTH_26         Cro/C1-type HTH DNA-binding domain
    1.2e-06   28.5   0.0    1.8e-06   27.9   0.0    1.2  1  HTH_19         Helix-turn-helix domain
    0.00031   20.5   1.8    0.00055   19.8   1.8    1.4  1  HTH_25         Helix-turn-helix domain
     0.0007   19.3   1.8      0.002   17.9   1.8    1.7  1  HTH_IclR       IclR helix-turn-helix domain
     0.0022   17.8   0.1     0.0038   17.1   0.1    1.4  1  HTH_5          Bacterial regulatory protein, arsR family
     0.0025   17.3   0.5      0.004   16.7   0.5    1.3  1  HTH_24         Winged helix-turn-helix DNA-binding
     0.0026   17.4   0.0     0.0038   16.9   0.0    1.2  1  Cupin_1        Cupin
     0.0043   17.0   0.0     0.0073   16.2   0.0    1.3  1  AraC_binding   AraC-like ligand binding domain
  ------ inclusion threshold ------
      0.025   14.1   2.1      0.086   12.4   1.1    2.1  2  Sigma70_r4     Sigma-70, region 4
      0.032   14.2   0.0      0.053   13.5   0.0    1.3  1  HTH_37         Helix-turn-helix domain
      0.069   13.2   0.2       0.11   12.5   0.2    1.4  1  HTH_35         Winged helix-turn-helix DNA-binding
       0.14   12.0   0.7       0.63    9.9   0.1    2.5  2  MerR           MerR family regulatory protein
       0.15   11.9   0.1       0.32   10.8   0.1    1.5  1  HTH_10         HTH DNA binding domain
       0.31   10.9   3.4       0.84    9.5   3.0    2.0  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.2   2.2e-17   2.3e-14       1      55 []      16      70 ..      16      70 .. 0.98

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 2.2e-17
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsldel 55
                l++lR q+  +++eL++++G+s+st+sr+E+G r+P+le l+ la+a gv+ld+l
  KIR66029.1 16 LRALRRQRETTLAELSAATGISVSTLSRLESGARRPTLEQLLPLARAHGVTLDDL 70
                89***************************************************87 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   5.7   1.4e-16   1.4e-13       3      61 ..      13      70 ..      12      73 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 1.4e-16
      HTH_31  3 GalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaer 61
                G++LralR+++  +++e+ +++g+s+stlsrlE+G+r rp++++l  lara+g++ +++
  KIR66029.1 13 GPRLRALRRQRETTLAELSAATGISVSTLSRLESGAR-RPTLEQLLPLARAHGVTLDDL 70
                99***********************************.9***************97654 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   1.9e-15     2e-12       8      70 ..     114     177 ..     107     178 .. 0.88

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 1.9e-15
                 TE.EEE.EECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEE CS
     Cupin_2   8 Ge.sap.shrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllvv 70 
                 G+  +p + +H+g  e++yVl G++++ +++++ +l++G+++ f++ +pH+f+ +  + +++l++
  KIR66029.1 114 GGrREPdPQTHEGY-EWLYVLNGRLRMVLGERDLVLSPGEAAEFDTRVPHWFGAADAGSVEFLSL 177
                 3444454777****.*****************************************99****987 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   2.8e-12   2.9e-09       1      59 [.      15      72 ..      15      76 .. 0.95
   2 ?   -3.0   0.1        10     1e+04       1      10 [.     136     145 ..     136     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 2.8e-12
      HTH_26  1 kLrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLle 59
                +Lr l ++r+ t +eL+ +tgis +tlsrl +g ++r++l+ L  +++a g+t++DL+ 
  KIR66029.1 15 RLRALRRQRETTLAELSAATGISVSTLSRLESG-ARRPTLEQLLPLARAHGVTLDDLVG 72
                799******************************.59*********************86 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 10
      HTH_26   1 kLrelmadrg 10 
                 +Lr+++ +r+
  KIR66029.1 136 RLRMVLGERD 145
                 79****9997 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.7e-09   1.8e-06       2      59 ..      14      70 ..      13      74 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.7e-09
      HTH_19  2 erLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyl 59
                 rL+++R+++  t++el+  +gis s +s +E+g +  p+ e ll +a+a g++l+ l
  KIR66029.1 14 PRLRALRRQRETTLAELSAATGISVSTLSRLESGAR-RPTLEQLLPLARAHGVTLDDL 70
                59********************************99.9****************9987 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   1.8   5.2e-07   0.00055       1      33 [.      15      47 ..      15      50 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.2e-07
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHCT CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEed 33
                rLra R++r  +l e+++ t I++++l +lE++
  KIR66029.1 15 RLRALRRQRETTLAELSAATGISVSTLSRLESG 47
                7******************************98 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   1.8   1.9e-06     0.002       9      38 ..      16      44 ..      16      45 .. 0.96

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.9e-06
                HCT-CTTBSS-BHHHHHHHHTS-HHHHHHH CS
    HTH_IclR  9 LdalaeapqeltlselArrtglpkStvhRl 38
                L+al+++++  tl+el+++tg++ St +Rl
  KIR66029.1 16 LRALRRQRET-TLAELSAATGISVSTLSRL 44
                899******8.*****************98 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   3.6e-06    0.0038       8      34 ..      16      43 ..      16      43 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.6e-06
                HHHHTT.SSEEHHHHHHHHTS-HHHHHH CS
       HTH_5  8 LklLae.gelcvcelaeelglsqstvSh 34
                L++L++ +e++  el++++g+s st+S+
  KIR66029.1 16 LRALRRqRETTLAELSAATGISVSTLSR 43
                78999999******************97 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.5   3.8e-06     0.004       9      36 ..      16      43 ..      16      44 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.8e-06
      HTH_24  9 LelLqknprisqreLAerlglSpstvnr 36
                L++L+++  ++ +eL+ ++g+S+st++r
  KIR66029.1 16 LRALRRQRETTLAELSAATGISVSTLSR 43
                899**********************997 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.6e-06    0.0038      32     116 ..     102     181 ..      94     189 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.6e-06
                 TEEEEEEEE..TTEEEE..EEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSSSEEEE.EEEESS CS
     Cupin_1  32 gisaarvdl.epgglll..PhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgdepavai.vvfdtn 116
                 gi a+++++ + gg ++  P++h    e++yvl+G++r  +v  ++     + +l++G++  +   ++h++ + + +  v++ ++f+++
  KIR66029.1 102 GIQAYKLVIpAGGGRREpdPQTH-EGYEWLYVLNGRLR--MVLGER-----DLVLSPGEAAEFDTRVPHWFGAAD-AGSVEFlSLFGSQ 181
                 56677777766666665226899.99************..666664.....799*******************97.5555551555555 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.9e-06    0.0073      17      66 ..     120     169 ..     112     187 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.9e-06
                   EEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TT CS
  AraC_binding  17 pphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdse 66 
                   +p +h+ y++ yv+ G+ r  l++r   l+pG+   +   +pH + +++ 
    KIR66029.1 120 DPQTHEGYEWLYVLNGRLRMVLGERDLVLSPGEAAEFDTRVPHWFGAADA 169
                   5789*****************************99999999988877765 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.1   8.2e-05     0.086      15      45 ..      19      49 ..      16      50 .. 0.92
   2 ?   -0.0   0.0      0.62   6.5e+02       1      16 [.     129     144 ..     129     154 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.2e-05
                HHHTTT--HHHHHHHHTS-HHHHHHHHHHHH CS
  Sigma70_r4 15 lrfgeglTleEIgerlgiSrerVrqiekrAl 45
                lr+ ++ Tl+E+++  giS ++ +++e+ A+
  KIR66029.1 19 LRRQRETTLAELSAATGISVSTLSRLESGAR 49
                788899*********************9886 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.62
                 HHHHS-HHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelr 16 
                 +L +L+ r r+vl  r
  KIR66029.1 129 WLYVLNGRLRMVLGER 144
                 67789*******9877 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     5e-05     0.053      22      75 ..      15      67 ..       6      68 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5e-05
                HHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTTEEE CS
      HTH_37 22 aiaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalGqkv 75
                ++++l+++re + +e+ +++gi+ + +srl+    +r +l++Ll l+ a G ++
  KIR66029.1 15 RLRALRRQRETTLAELSAATGISVSTLSRLES-GARRPTLEQLLPLARAHGVTL 67
                48899**************************6.78999*****99999999776 PP

>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   0.00011      0.11      12      35 ..      21      44 ..      16      68 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
      HTH_35 12 rkrgttLaalsreaglssstlsna 35
                r+r+ttLa+ls + g+s stls+ 
  KIR66029.1 21 RQRETTLAELSAATGISVSTLSRL 44
                689*****************9875 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00059      0.63       3      20 ..      28      45 ..      26      47 .. 0.86
   2 ?   -1.7   0.0       2.5   2.7e+03       1       8 [.     149     156 ..     149     161 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00059
                HHHHHHHTTTHHHHHHHH CS
        MerR  3 gevAeltGvsprtLRyYE 20
                 e++ +tG+s++tL ++E
  KIR66029.1 28 AELSAATGISVSTLSRLE 45
                79************7776 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.5
                 EHHHHHHH CS
        MerR   1 tIgevAel 8  
                 + ge+Ae+
  KIR66029.1 149 SPGEAAEF 156
                 579***98 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1    0.0003      0.32      21      41 ..      22      42 ..      20      46 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0003
      HTH_10 21 PRrvtlkeLAkelGIskstls 41
                 R++tl+eL+ + GIs stls
  KIR66029.1 22 QRETTLAELSAATGISVSTLS 42
                599****************97 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.0    0.0008      0.84       9      35 ..      16      42 ..       1      45 [. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0008
  HTH_AsnC-type  9 LeaLqedaRisyaeLAervGlSestvl 35
                   L+aL+++  ++ aeL++++G+S st  
     KIR66029.1 16 LRALRRQRETTLAELSAATGISVSTLS 42
                   9**********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1261.30
//
Query:       KIR66030.1  [L=320]
Description: NAD/FAD-dependent oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-18   66.6   2.9    3.1e-10   40.0   0.2    2.1  2  Amino_oxidase  Flavin containing amine oxidoreductase
    4.9e-15   55.5   0.5      1e-14   54.5   0.5    1.5  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    2.2e-05   23.9   0.2    3.4e-05   23.2   0.2    1.3  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    5.6e-05   22.7   1.3    7.5e-05   22.2   1.3    1.2  1  FAD_oxidored   FAD dependent oxidoreductase
    7.3e-05   22.5   5.3    7.3e-05   22.5   5.3    2.0  2  DAO            FAD dependent oxidoreductase
     0.0003   20.0   2.5     0.0003   20.0   2.5    1.6  2  FAD_binding_2  FAD binding domain
     0.0016   19.0   0.2     0.0029   18.1   0.2    1.4  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0023   17.1   1.9     0.0031   16.7   1.9    1.1  1  GIDA           Glucose inhibited division protein A
     0.0031   16.8   1.3      0.005   16.1   1.3    1.3  1  FAD_binding_3  FAD binding domain
     0.0042   15.8   1.0      0.006   15.3   1.0    1.1  1  HI0933_like    HI0933-like protein
     0.0087   15.4   1.9      0.014   14.7   1.9    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.017   14.4   1.7      0.023   13.9   1.7    1.1  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
       0.02   14.2   0.3      0.032   13.5   0.3    1.2  1  Thi4           Thi4 family
       0.17   10.9   1.0       0.27   10.3   1.0    1.3  1  Lycopene_cycl  Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.2   2.4e-13   3.1e-10       1      57 [.      15      71 ..      15      75 .. 0.93
   2 !   27.1   0.3   1.9e-09   2.4e-06     204     389 ..     105     268 ..      71     309 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 2.4e-13
                   HHHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEETTEEEESS--EEETTTHHHHHH CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlEardrvGGRirtvrsdGylielGamwftgagnpllel 57
                   +aG a+A +L++aG  V+v E    +GGR++++r+dG +++lGa  ft +++ + e+
     KIR66030.1 15 IAGVACAAELHRAGIPVQVRERGRVPGGRMASKRFDGRPADLGAAYFTVSDPGFAEV 71
                   8**********************************************9988776665 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 1.9e-09
                    EE.TTHTHHHHHHHHHTTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S-HHHHHSSEEESCCSHHHHHHHHHSEEEEEEEEEEEES CS
  Amino_oxidase 204 lp.rgGlsqlpealaeelrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvplgvlkailfsPplpdekaeairnlgfgsvnkvilefd 298
                     +  +Gl++l+e+la+   +l + +++ V  ++    g tv   dge  ++ aV ++vp + ++  l++P l +++++a++     ++   +l+f+
     KIR66030.1 105 WAaPRGLRSLVEHLAA---DLPVVVDRLVLGVEP---GPTV---DGE--PCAAVALAVPGPQAA-LLLDPAL-EAATAAVQAQRWSPTLSGVLRFP 187
                    33489***********...**************9...7777...888..7**************.*******.79********************* PP

                    SGGSGCSTSECECECCCEEETTTEEEEECCECCCSTTTEEEEEEEEEC.HHHHHHHTTS-HHHHHHHHHHHHHHHHTGTSSTCSEEEEEECC CS
  Amino_oxidase 299 rkfwednalgqgvlvseltttlgeafissdfpsrappgkglvllvyvg.gdaaneleslsdeelvqavlrdLrklfgeevpepkatlvtrWh 389
                    ++ w d        ++   ++ +   +  d  +r+ +  + vl++++  + aa +l  +++   ++a+ + +r l+g   +  + ++v+rW+
     KIR66030.1 188 TRSWAD-------FRGAFVNDHPLLNLVCDDGDRRGDRAP-VLVAHTTpEFAAGHL--AQPTGAARAIEEAVRDLLG-LPDRAEHVHVHRWT 268
                    ******.......777777777777777665555555555.588888879999998..6999***************.9999999******7 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.5   7.8e-18     1e-14       1      56 [.      10      65 ..      10      76 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 7.8e-18
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEECTS---EEETT CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpgvrvdygahifhgsg 56
                   +vGaG++G ++A++L++ag+ v++ e+++ +GGr+as++++g+++d+ga +f+ s+
     KIR66030.1 10 VVGAGIAGVACAAELHRAGIPVQVRERGRVPGGRMASKRFDGRPADLGAAYFTVSD 65
                   8***************************************************9864 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.2   2.6e-08   3.4e-05       2      40 ..       7      44 ..       6      66 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.6e-08
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggc 40
                 +vvv+G+G+AG+a+a +l +ag+ v +  ++g +++g++
   KIR66030.1  7 RVVVVGAGIAGVACAAELHRAGIPVQVR-ERGRVPGGRM 44
                 8*************************99.7777777765 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   1.3   5.9e-08   7.5e-05       2      67 ..       8      88 ..       7     142 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 5.9e-08
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsg...lvatdig...nkaee............qvvtgiareflerl 67
                  vvVvG+g+aGva+A    raG  v + e+ +v GG ++s+   ++++d+g   +   +            +++ g+are+++  
    KIR66030.1  8 VVVVGAGIAGVACAAELHRAGIPVQVRERGRVPGGRMASKrfdGRPADLGaayF---TvsdpgfaevvrgWAAAGLAREWTDTF 88
                  9***********************************998622244555553331...233355555555566666666666665 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   5.3   5.7e-08   7.3e-05       1      42 [.       7      51 ..       7     193 .. 0.74
   2 ?    0.4   0.1       0.3   3.9e+02     263     298 ..     221     257 ..     122     308 .. 0.54

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 5.7e-08
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS.SGGGSSEE CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiags.gaSgrnsg 42
                +vv++G+Gi+G+++A eL r+g  V + e+g+ +g   aS r  g
  KIR66030.1  7 RVVVVGAGIAGVACAAELHRAGipVQVRERGRVPGGrMASKRFDG 51
                59****************9999************95467766655 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.3
                 EEE.EESSEEETTCSSTSCSHHHHHHHHHHHHHHS..GG CS
         DAO 263 vlv.Ggtadeesgdddpevdeedidellealrklf..Pq 298
                 vlv  +t  +e++ ++++ +  +++++ ea+r+l+  P+
  KIR66030.1 221 VLVaHTT--PEFAAGHLAQPTGAARAIEEAVRDLLglPD 257
                 2221222..344444444444455555555555555555 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   2.5   2.3e-07    0.0003       2      36 ..       8      42 ..       7      47 .. 0.89
   2 ?   -2.1   0.0       1.2   1.6e+03     263     284 ..     271     289 ..     190     315 .. 0.60

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.3e-07
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36
                   v+V+G+G+AG a+A+e+++aG  v v e + + gg
     KIR66030.1  8 VVVVGAGIAGVACAAELHRAGIPVQVRERGRVPGG 42
                   9***********************99999887666 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                    TBB--THHHHTT-EEE-TTSSB CS
  FAD_binding_2 263 giLitealrgeGgilvdkdGrr 284
                    +     +++g+G + +d+dG  
     KIR66030.1 271 KP---VDRAGDGTYHLDADGIG 289
                    22...24555555555555554 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.2   2.2e-06    0.0029       1      40 [.       7      43 ..       7      58 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.2e-06
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSH CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDe 40
                +vvvvG+G  g+ +A++l++ g  V+v er+  +    ++
  KIR66030.1  7 RVVVVGAGIAGVACAAELHRAGIPVQVRERGRVPG---GR 43
                79*************************99998777...44 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.9   2.4e-06    0.0031       2      26 ..       8      32 ..       7      47 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.4e-06
                EEEE-SSHHHHHHHHHHHHTT--EE CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvl 26
                v+V+G+G AG+++A+++ r+G++v 
  KIR66030.1  8 VVVVGAGIAGVACAAELHRAGIPVQ 32
                9*********************997 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.3   3.9e-06     0.005       2      32 ..       6      36 ..       5      43 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.9e-06
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   t V++VGaG aG+  a +L++aG+ v + e+
     KIR66030.1  6 TRVVVVGAGIAGVACAAELHRAGIPVQVRER 36
                   89**********************9988666 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.0   4.7e-06     0.006       2      37 ..       7      42 ..       6      46 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.7e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgr 37
                 +v+v+G+G AG+ +A++++++g  V + e+++ +g 
   KIR66030.1  7 RVVVVGAGIAGVACAAELHRAGIPVQVRERGRVPGG 42
                 79***************************9988875 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   1.9   1.1e-05     0.014      25      57 ..       2      34 ..       1      40 [. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-05
                 CB---EEEEESTSHHHHHHHHHHHHTT-EEEEE CS
  AlaDh_PNT_C 25 gvepakvlviGgGvaGlqAiatakglgakVtvl 57
                 gve+ +v+v+G+G+aG++ +a  ++ g  V+v 
   KIR66030.1  2 GVERTRVVVVGAGIAGVACAAELHRAGIPVQVR 34
                 899******************999999988875 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.7   1.8e-05     0.023       1      32 [.       9      39 ..       9      42 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgni 32
                 +++GaG aG+a+a el +ag+  + + E+g++
   KIR66030.1  9 VVVGAGIAGVACAAELHRAGI-PVQVRERGRV 39
                 79*******************.7999999975 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   2.5e-05     0.032      18      57 ..       6      44 ..       3      47 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspGGGa 57
                + vv+vGaG +G+++a  l ++ ++ v + er   pGG +
  KIR66030.1  6 TRVVVVGAGIAGVACAAELHRA-GIPVQVRERGRVPGGRM 44
                569******************9.*********99999965 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.0   0.00021      0.27       2      29 ..       8      33 ..       7      46 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00021
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvl 29
                   vvv+GaG Ag++ Aa+l   ++g+ v +
     KIR66030.1  8 VVVVGAGIAGVACAAEL--HRAGIPVQV 33
                   8****************..788877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2262.88
//
Query:       KIR66031.1  [L=426]
Description: cation transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-37  129.5  28.2    1.5e-37  129.3  28.2    1.0  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
  ------ inclusion threshold ------
       0.06   12.6   1.2       0.14   11.4   1.2    1.6  1  Ion_trans       Ion transport protein
       0.49    8.6   2.4        0.8    7.9   2.4    1.3  1  DUF2070         Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.3  28.2   2.5e-41   1.5e-37       3     380 ..      10     403 ..       8     404 .. 0.92

  Alignments for each domain:
  == domain 1  score: 129.3 bits;  conditional E-value: 2.5e-41
                     HHHHHHHHHHH...HHHHTTSXHHHHHHHHHHHHTTTTTS.........HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   3 llillallvgl...larrlklpeivgliiaGlllGpsglglieps....eedlevlselglilllFlaGleldlrelrknlksilllallgvlit 90 
                     +++l all+g+   +++r  l+++++++ +G+l+     gl  p+     e+ ++l e+g+i+ l  aGl++d+   ++ + s+  l+ + + ++
      KIR66031.1  10 VVGLGALLAGIlprVLERRPLSMPIAFLGLGMLIFILPTGLPGPDplehPEIATHLTEIGVIVALMGAGLKIDRPLSWARWSSTWRLLAIAMPLC 104
                     56677999999785588888******************995444467777***********************9988888888888888889999 PP

                     HHHHHHHHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.....CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTX.XXXXTSSSTSXHH CS
  Na_H_Exchanger  91 vvliGlllylllilgiplleallfgailsatdpvvvlailk....eegrvperlgtlllgesvlnDavavvllavllalak.eeaggetslllll 180
                     +++++ll ++  + g+  ++all+ga+l++tdpv+++ +      +    + +++  l +e++lnD++a+++++ ++a+a+ + a +e+ ++++ 
      KIR66031.1 105 IAAVALLGWW--WAGLVPAAALLLGAALAPTDPVLASDVQVgeptDVEDSEDEVRFALTSEAGLNDGLAFPFVYAAVAIATaGLAPREWFVDWFT 197
                     9999999998..8999***********************9999988888888999999**********************99999********** PP

                     HHHHHHHHHHHHHHHHHHHHHHHHHHHS....CTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH...HH CS
  Na_H_Exchanger 181 liflvvavgglllglvigwllrlitrft....dddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnklseklesfre...gl 268
                     + +l+ +++g+ +gl++gwll ++  ++    +  r+ e +l+l+  +la++l e++g  g l++f+a  ++   e+ ++ +  l+ f+e    l
      KIR66031.1 198 VDVLYKLAVGVGGGLAVGWLLGKLFFRApsqlRLARHAEGFLALAATFLAYGLVEVVGGYGFLAVFVAARAIRAAERTHEFHSVLHDFAEqveRL 292
                     **********************9999999********************************************9999999888899999999999 PP

                     HHHHHHHHHHHHSXHHHHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTXSSXHHHHHHCCCCSS.BHHHHHH.HHHHHHHHXHHHHTT.SSTTT CS
  Na_H_Exchanger 269 fnplfFvlvGlsldlkvlnnhlsvlilvllilvaillgrilavflllrllglslrealiigfgglqrgavala.laalgpalgllarel.yalli 361
                     + +l+ +l+G  +   +l   +  ++++l+ l++++++r+l+++l lr       e ++i++ g+ rg  +++ la + +++ ++++el +a++ 
      KIR66031.1 293 LTVLLLLLFGGAVVGGLLA--PLTWPAALVGLALVFVVRPLVAWLSLRGAPGRPAEHWVISLFGI-RGVGSFYyLAYATTKADFPQAELlWATVG 384
                     9999999999999988886..99999999999******************9999*******9999.99999872555555669************ PP

                     CSTSXHHHHHHHHHHHHHH CS
  Na_H_Exchanger 362 vvvlftvlvqGlslkpllk 380
                     +vv+++v+v+G+  +p+++
      KIR66031.1 385 LVVVVSVVVHGVAATPVMQ 403
                     ****************986 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.2   2.3e-05      0.14      63     143 ..     189     305 ..     170     313 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.3e-05
                 HHHCHSHHHHHHHHHHHHHHHHH..............HHHH.........................HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHH CS
   Ion_trans  63 krYlrdpwnilDflvvlpsllsl..............vlse.........................esllllsvlrlfrvlrllklisrleglrtlvta 122
                 ++++ d w+ +D+l+ l + +                                             e++++  +l +f  +r++++ +r+  +  +++ 
  KIR66031.1 189 REWFVD-WFTVDVLYKLAVGVGGglavgwllgklffrA--PsqlrlarhaegflalaatflayglvEVVGGYGFLAVFVAARAIRAAERTHEFHSVLHD 284
                 555555.5555555555555522222222333333330..02233333444555555555666666789****************************** PP

                 HHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 123 lirsvkdllnvlllllvvlfi 143
                 +++ v  ll vlllll+ + +
  KIR66031.1 285 FAEQVERLLTVLLLLLFGGAV 305
                 ****************98876 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.4   0.00013       0.8      22     173 ..     237     392 ..     218     418 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00013
     DUF2070  22 illalligllaflssklfgillfglpalvaflltlpvlrilggr..ltykrslflalltelivviisll..aillsall.qalvllalvlslalvfalr 115
                  +lal++++la+   +     ++g   ++a+++  +++r ++++  +++  + f   +  l+ v+++ll  ++++   l + l+  a +++lalvf++r
  KIR66031.1 237 GFLALAATFLAYGLVE-----VVGGYGFLAVFVAARAIRAAERTheFHSVLHDFAEQVERLLTVLLLLLfgGAVVGG-LlAPLTWPAALVGLALVFVVR 329
                 4556666666654444.....44444566666666666666555554444443333333333333222200222222.24677778999********** PP

     DUF2070 116 llvlvavsdesllkav....lpaliqpllailllvly............fspesfllllllslifalavylfiv 173
                  lv ++  +  +++ +    +  + +  ++ +++++y            +            ++++l+v++ +v
  KIR66031.1 330 PLVAWLSLRGAPGRPAehwvISLFGIRGVGSFYYLAYattkadfpqaelL-----------WATVGLVVVVSVV 392
                 *****999999888775433333344444444444448555554444432...........4444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 2765.56
//
Query:       KIR66032.1  [L=225]
Description: HAD family hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-22   80.9   0.0    1.4e-22   80.6   0.0    1.1  1  HAD_2           Haloacid dehalogenase-like hydrolase
    2.1e-19   70.7   0.2    2.8e-19   70.2   0.2    1.2  1  Hydrolase       haloacid dehalogenase-like hydrolase
    1.2e-12   48.7   2.2    1.7e-12   48.2   2.2    1.2  1  HAD             haloacid dehalogenase-like hydrolase
    3.9e-08   33.3   0.1    8.2e-08   32.2   0.1    1.5  1  Hydrolase_like  HAD-hyrolase-like
    0.00055   20.0   0.0       0.26   11.4   0.0    2.6  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.27   10.9   0.0         26    4.4   0.0    2.6  3  Hydrolase_3     haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   4.7e-26   1.4e-22       1     177 [.       9     186 ..       9     187 .. 0.90

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 4.7e-26
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee...kieellrkyneekkk...kevkpydgvkelLeeLke 93 
                 ++FD+DgTl+dt+ l+  ++ e+l++ +   ++   +++ ig+ +++ll++l   e+      k    lr+ +++++    + + p++ + +l+   ++
  KIR66032.1   9 VLFDVDGTLVDTTYLHTVSWWEALRQADQ-PVPMATIHRAIGMGSDKLLDHLLGPERDRTadgK----LRDAHDSLYGeywERLVPLPRAADLVRACAA 102
                 79**********************99865.9**********************98776654442....344444444435558**************** PP

       HAD_2  94 agyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvia 177
                 +g+++ ++Ts  + +v    ++l+ ++ ++++ ++ d+e++KP+p+++ +ale+ +l++++v++vGDs  D+ aa k+ i +++
  KIR66032.1 103 RGLRVVLATSAAAHEVGALRRALDADDAITTVTCAADAEQSKPAPDILVAALEQSGLDASRVVFVGDSVWDVAAAGKLDIPCVG 186
                 *****************************************************************************9998876 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.2   9.5e-23   2.8e-19       3     207 ..       8     178 ..       6     181 .. 0.86

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 9.5e-23
                 EEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtva 101
                  v+fD+dGTL++++  ++  + +a                         + + + + +++     a+ +g+ ++l++l     lg + +   +     a
  KIR66032.1   8 GVLFDVDGTLVDTTYLHTVSWWEA---------------------LRQADQPVPMATIHR-----AIGMGSDKLLDHL-----LGPERDRTADGKLRDA 75 
                 599***********9999999999.....................777777899999***.....*************.....4444444444444444 PP

                 HHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 102 llqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDg 199
                  +   ++++++    l + p aa++v++  a+g++vvl+t+   + + ++ + l+ dd++  v ++ + + +kp p+++vaa+++ + + ++v++VGD+
  KIR66032.1  76 HD--SLYGEYWER--LVPLPRAADLVRACAARGLRVVLATSAAAHEVGALRRALDaDDAITTVTCAADAEQSKPAPDILVAALEQSGLDASRVVFVGDS 170
                 44..566666665..55*****************************9999999998888899999999999**************************** PP

                 HHHHHHHH CS
                 xxxxxxxx RF
   Hydrolase 200 vnDaaala 207
                 v+D+aa+ 
  KIR66032.1 171 VWDVAAAG 178
                 ******85 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   2.2   5.6e-16   1.7e-12       1     187 [.       9     177 ..       9     178 .. 0.73

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 5.6e-16
         HAD   1 alfDfDgTLldgdsle..lllrfllrrgaprlwralreklllal....frellrldraglaelleallaglseelaaelerfvaevirpklldpgalel 93 
                 +lfD+DgTL+d+  l+   ++++l++ ++p   +++++++ +         l+  +++ ++  l+ ++ +l++   ++ er+v          p a +l
  KIR66032.1   9 VLFDVDGTLVDTTYLHtvSWWEALRQADQPVPMATIHRAIGMGSdkllDHLLGPERDRTADGKLRDAHDSLYG---EYWERLV--------PLPRAADL 96 
                 79**********7777999999999999999999999995555522224445555555555555555555554...5556666........448***** PP

         HAD  94 laahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpll 187
                 ++a++a+G rvv+ +++  + v +l ++l+ad+ + t       +t  +  e++  + +  vaal++       g+d ++vv++GDs++D++++
  KIR66032.1  97 VRACAARGLRVVLATSAAAHEVGALRRALDADDAITT-------VTCAADAEQSKPAPDILVAALEQ------SGLDASRVVFVGDSVWDVAAA 177
                 **999*************************9*99999.......22221122222222222345555......99999*************987 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.1   2.7e-11   8.2e-08       3      71 ..     143     208 ..     142     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 2.7e-11
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SE CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvadd 71 
                     +KP+p ++ +ale+ g+d ++v+++GD+   D+a+A +  + +v  + G t++++l+   +++ +v dd
      KIR66032.1 143 SKPAPDILVAALEQSGLDASRVVFVGDS-VWDVAAAGKLDIPCVGLTCGGTSRGELA--GAGAVAVYDD 208
                     6***************************.99**********************9977..4456666665 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0043        13       1      14 [.       9      22 ..       9      50 .. 0.74
   2 !   11.4   0.0   8.6e-05      0.26      10      76 ..      84     143 ..      78     176 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0043
                 EEEESTTTSEETTE CS
  Hydrolase_6  1 flfDidGvLwrgdk 14
                 +lfD+dG+L++ + 
   KIR66032.1  9 VLFDVDGTLVDTTY 22
                 69********7554 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 8.6e-05
                  EETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHHHHTT----GGGEEEHHHHHHHHHHH CS
  Hydrolase_6  10 wrgdkaipgaaealnalraagkpvvllTNnsskseeeyakkleklgvditeeqvvtsataaaeylkk 76 
                  w+   ++p aa++++a+ a+g +vvl T  +          + +l   +++++ +t+ t+aa+  ++
   KIR66032.1  84 WERLVPLPRAADLVRACAARGLRVVLATSAAAHE-------VGALRRALDADDAITTVTCAADAEQS 143
                  777789**********************876544.......55556666667777777777766666 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0087        26       1      18 [.       9      26 ..       9      38 .. 0.69
   2 ?    3.4   0.0     0.018        54      18      57 ..      91     130 ..      85     137 .. 0.83
   3 ?   -1.5   0.0      0.57   1.7e+03     196     216 ..     154     174 ..     150     176 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0087
                 EEEEIIIIIS-TTS---H CS
  Hydrolase_3  1 ialDlDGTLlnsdkkise 18
                 + +D+DGTL++ +   + 
   KIR66032.1  9 VLFDVDGTLVDTTYLHTV 26
                 579*******97655444 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.018
                  HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSE CS
  Hydrolase_3  18 ektkeaikklkekgikvviATGRslravlpvleelgldlp 57 
                  +++++ ++ + ++g  vv+AT     +v  + ++l+ d +
   KIR66032.1  91 PRAADLVRACAARGLRVVLATSAAAHEVGALRRALDADDA 130
                  567889999*************999999999999887744 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.57
                  HHHCT--GGGEEEEESSGGGH CS
  Hydrolase_3 196 akelnisleeviafGDgeNDi 216
                  +++ +++ ++v+ +GD+  D+
   KIR66032.1 154 LEQSGLDASRVVFVGDSVWDV 174
                  6788999*********98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1519.73
//
Query:       KIR66033.1  [L=714]
Description: histidine kinase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-40  138.2   1.7    6.7e-40  137.1   1.7    1.6  1  SpoIIE       Stage II sporulation protein E (SpoIIE)
    1.2e-10   41.5   0.0    2.8e-10   40.2   0.0    1.7  1  HATPase_c_2  Histidine kinase-like ATPase domain
    3.3e-05   24.1   0.2    0.00014   22.1   0.2    2.2  1  PAS_4        PAS fold
     0.0049   17.5   0.3       0.26   11.9   0.1    2.6  2  GAF          GAF domain
     0.0057   16.9   0.0      0.011   16.0   0.0    1.4  1  PAS_9        PAS domain
  ------ inclusion threshold ------
      0.021   15.3   0.0      0.054   14.0   0.0    1.6  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
      0.032   14.2   0.0        0.1   12.6   0.0    1.8  1  PAS_8        PAS domain
       0.12   12.8   0.0       0.24   11.8   0.0    1.4  1  sCache_3_3   Single cache domain 3


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   1.7     3e-43   6.7e-40       2     191 ..     386     575 ..     385     577 .. 0.93

  Alignments for each domain:
  == domain 1  score: 137.1 bits;  conditional E-value: 3e-43
                 TTEEEEEEEECSSSSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHCHCTTSTT.....TTCEEEEEEEETTTTEEEEEEESSSSEEEEETTS... CS
      SpoIIE   2 dgrlalvvgDvvGhGleAalimgllrsalrelataglepaevlkrlnralardleee....erfaTavlavydpstgkleyanaGhpppllvrpdg... 93 
                  g l++v+gDv Gh+++Aa+ mg++r alr+la ++ +p+ vl+ l+r++  +l+ e    e f+T+v++v+d ++++l++a+aGhp pl++r+ g   
  KIR66033.1 386 SGELGVVLGDVAGHDVQAAARMGQVRAALRALALSDPRPDAVLAGLDRLV-GSLGAEtgsqELFVTVVFGVVDAQRERLTLASAGHPAPLVRRG-Gpgg 482
                 68899*********************************************.7777777999*********************************.6699 PP

                 ..TEEEEE--SS--TTTSSST-EEEEEEE--TTEEEEEESCCCCSSSHHHHHHCCCHHCHHHHCT.....HCCHHHHHHHHHHHHTTSSSSS-EEEEEE CS
      SpoIIE  94 ..gtklllastglplGilpeadyetaelelepgdtlllyTDGvtEardsdgelfgkerllallasaegesleelldalveellelgsgeleDDitllvl 190
                    +++l++++g+plG+  +  + t++++++pgdtlll++DGv+E+r  +    g++ l+a++a a++ ++ +l+    +++        eDD+++l++
  KIR66033.1 483 epVAEYLDVPPGAPLGL--GCAPCTTTVRFAPGDTLLLFSDGVVERR-RQSLVAGLDSLAAAVAGAASGDPRALCAVATAAVAG----ATEDDVAVLAV 574
                 999**************..889999**********************.666667889999999999889999999999999999....67********9 PP

                 E CS
      SpoIIE 191 r 191
                 +
  KIR66033.1 575 E 575
                 7 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   1.3e-13   2.8e-10       2     121 ..     589     698 ..     588     702 .. 0.85

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.3e-13
  HATPase_c_2   2 sadpehvrtvrevaeavlrraglseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeepkeslkegG 99 
                  +a+p+  + vr++++a l  ++++e+++    l+ +E+ tNa  ha      ++ve+    ++e+l v+vaDsG   +++ ++        + l ++G
   KIR66033.1 589 PAEPTAPSRVRHWMTAQLTDWQVPEAVVGAAVLCTSELTTNALLHAGTA---ARVEID--LSPERLLVSVADSGTRGTVTRART-------DTLSSRG 674
                  899999999**************************************85...446666..79**************99987655.......56789** PP

  HATPase_c_2 100 rGlalikglvDevey..dgegnvv 121
                  rGl li++l+D      + +g +v
   KIR66033.1 675 RGLGLIEQLSDAWGTdpTVRGSTV 698
                  ***********9766334445555 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.2   6.3e-08   0.00014      17     108 ..      70     169 ..      56     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 6.3e-08
       PAS_4  17 vlyaNaaaaelfgappeellGktlaellpee.daarleralrrvlegeepiefleelll......pgeerhyelrl.lPlrdesGevigvlvisrDiTe 107
                  l++N a+a l+g +  ++ G++  e++ +    +++ +a +r+ +++e+  + e +l+      + +++ + +r  +P+rd+ G+++gvl ++ ++++
  KIR66033.1  70 LLFYNDAYATLIGDRHPDAAGRPAGEVFADVwGEPGVGDAFERAYRQGESSLEREAVLPydrqhpDARGQAVFTRGhSPVRDSAGRIVGVLTVTAETSQ 168
                 6789*********************9999999777777777777777776666666666688888555555555556*****************99987 PP

       PAS_4 108 r 108
                  
  KIR66033.1 169 V 169
                 5 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.064   1.4e+02      94     130 ..     148     184 ..      91     187 .. 0.85
   2 !   11.9   0.1   0.00011      0.26       2     132 ..     189     327 ..     188     328 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.064
                 EEEE.TTEEEEEEEEEESSSCSHHHHHHHHHHHHHHHH CS
         GAF  94 Plvn.dgelwGllvlhnpsppftreelellqvladqva 130
                 P+++  g+++G+l+++ ++    +e+l+ l  +a+ +a
  KIR66033.1 148 PVRDsAGRIVGVLTVTAETS-QVTEQLQSLSDVAAALA 184
                 889779***********555.36777777777776665 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHTESEEEEEEEEETTEEE.....................CEEEEECCEEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTTHHH CS
         GAF   2 leelldtvveelrellgadrvalylpdydGlhy.....................dipqasrwlfmkngrgicgqvlatgqplvipdstpdprfaqynrr 79 
                 l+++++  ++ l  +++ drv++  +d  G ++                     + p+ s+ + ++  r+ ++q ++ gqpl+     + +r+ q    
  KIR66033.1 189 LDDVARVSLRYLLTAFDTDRVTFGVDDGAGWRTvrrvrgelldeaderlpplwrRSPADSTGPLIVAARSGVAQFVSDGQPLRDI---AVDRHDQ---- 280
                 67788888888999999999999552333321133444444445555556666567777777888888887889***********...*******.... PP

                 HHHHHTTESEEEEEEEEETTEEEEEEEEEE.SSSCSHHHHHHHHHHHHHHHHHH CS
         GAF  80 dllenmgirsslvvPlvndgelwGllvlhn.psppftreelellqvladqvava 132
                        +r++++ Pl+      Gl v ++  +  ++ +e++ll + a+++++a
  KIR66033.1 281 ------KVRALAAQPLRTSALRGGLTVGYHaAR-AWSAAERALLAASAELIGQA 327
                 ......9**********8555557777777444.6***************9987 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.8e-06     0.011       3      96 ..      60     160 ..      58     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.8e-06
       PAS_9   3 gili.dnpdgrilyaNeaalrllGyspeevlgksitdlf...vtdpeanerlraaleqgrk.....kerevevvlirkngetfwvlltaspvkdddgel 92 
                 ++++   +d  +l++N+a ++l+G  + +  g++  ++f    ++p   + +++a++qg++      +  ++ ++ +  g+ ++++ +  pv+d+ g++
  KIR66033.1  60 PMALaLGDDL-LLFYNDAYATLIGDRHPDAAGRPAGEVFadvWGEPGVGDAFERAYRQGESslereAVLPYDRQHPDARGQAVFTRGHS-PVRDSAGRI 156
                 5666556777.88***********999999******************************98887777777777777777888776665.999999999 PP

       PAS_9  93 vgii 96 
                 vg++
  KIR66033.1 157 VGVL 160
                 8843 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.4e-05     0.054      10     108 ..     623     702 ..     617     706 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEE CS
   HATPase_c  10 isnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttftftl 108
                  s+l +Na+ +a++a ++e+ ++   ++l +sv D+G   ++       +  +       + + +G Gl + ++l++ +g + +v     rG+t++f++
  KIR66033.1 623 TSELTTNALLHAGTAARVEIDLS--PERLLVSVADSGTRGTVTRAR---T--D-------TLSSRGRGLGLIEQLSDAWGTDPTV-----RGSTVWFEI 702
                 689********889999999999..55**********777775555...2..2.......3556888888999999999999999.....899999976 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.6e-05       0.1       9      51 ..      56      99 ..      50     116 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.6e-05
       PAS_8  9 sspdgiavvdlgdrivdvNqaalellGys.adlkgellgqllpv 51
                +sp+++a++ ++d+++++N+a++ l G + +d  g + g+++ +
  KIR66033.1 56 ASPVPMALALGDDLLLFYNDAYATLIGDRhPDAAGRPAGEVFAD 99
                79*****9876678*************66777777777655544 PP

>> sCache_3_3  Single cache domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011      0.24      77     105 ..     146     174 ..     133     176 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
  sCache_3_3  77 YePlkdadgkviGmlfvGlpeeevqalik 105
                   P++d++g+++G+l v  ++++v+++++
  KIR66033.1 146 HSPVRDSAGRIVGVLTVTAETSQVTEQLQ 174
                 68**********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5020.65
//
Query:       KIR66034.1  [L=291]
Description: TM helix repeat-containing protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-17   63.6  13.6    6.9e-15   54.8   2.9    4.7  5  TM_helix   Conserved TM helix
  ------ inclusion threshold ------
       0.31   11.0  22.6       0.22   11.5   0.4    3.2  3  Colicin_V  Colicin V production protein
        7.6    4.7  11.4         13    3.9  11.4    1.3  1  DUF2070    Predicted membrane protein (DUF2070)
        8.9    6.6  19.0       0.14   12.4   0.8    3.3  3  HemY_N     HemY protein N-terminus


Domain annotation for each model (and alignments):
>> TM_helix  Conserved TM helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   2.9   1.5e-18   6.9e-15       2      49 ..      15      62 ..      14      63 .. 0.97
   2 ?   -0.0   0.0       0.2   8.8e+02      35      48 ..      66      79 ..      66      80 .. 0.87
   3 !   21.7   3.1   3.1e-08   0.00014       3      42 ..     109     148 ..     107     153 .. 0.91
   4 ?   -2.5   4.8       1.2   5.3e+03      18      31 ..     160     173 ..     160     174 .. 0.90
   5 ?   -1.0   0.4       0.4   1.8e+03      18      27 ..     195     204 ..     187     221 .. 0.68

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 1.5e-18
                XXXSXXHHHHTTHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-H CS
    TM_helix  2 plnnllnellsflPnLvgAilILlvGwiiAkfvsrlvtkllaktgidd 49
                 l++++ ++l f+P+ +++i+IL+vGw+iAk v ++v+  l+++g+d+
  KIR66034.1 15 ALTDMWRSVLLFVPRAIAFIVILVVGWLIAKAVLKIVDAALERVGFDR 62
                699********************************************8 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.2
                HHHHHHHHHHHTS- CS
    TM_helix 35 srlvtkllaktgid 48
                + +v++ l++t+ d
  KIR66034.1 66 RGGVRRALERTKYD 79
                579********988 PP

  == domain 3  score: 21.7 bits;  conditional E-value: 3.1e-08
                 XXSXXHHHHTTHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    TM_helix   3 lnnllnellsflPnLvgAilILlvGwiiAkfvsrlvtkll 42 
                 +++l+  ++s lP+ ++Ai+I +v+  iA+ v++lvt  l
  KIR66034.1 109 ISDLIRGVVSWLPRAFIAIVIVVVAAAIANAVRDLVTGFL 148
                 57888899****************************9988 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHH CS
    TM_helix  18 vgAilILlvGwiiA 31 
                 v Ai IL++G i A
  KIR66034.1 160 VTAIFILALGVIAA 173
                 68********9987 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.4
                 HHHHHHHHHH CS
    TM_helix  18 vgAilILlvG 27 
                 v+ ilI  vG
  KIR66034.1 195 VAGILIVGVG 204
                 3445555555 PP

>> Colicin_V  Colicin V production protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4     5e-05      0.22      60      90 ..      29      59 ..      13      68 .. 0.86
   2 ?   -1.1   0.1      0.38   1.7e+03      58      84 ..      84     111 ..      73     124 .. 0.53
   3 ?    4.0  13.6      0.01        46      21     105 ..     120     203 ..     107     223 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5e-05
   Colicin_V 60 aiiaflllfllvllivsllgallsklvsktg 90
                ++iaf++++++++li++ + ++++ +++++g
  KIR66034.1 29 RAIAFIVILVVGWLIAKAVLKIVDAALERVG 59
                799*******************999887765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.38
   Colicin_V  58 laaiiaf.lllfllvllivsllgallsk 84 
                 la+++ + +llf+l ++++ +  + +s+
  KIR66034.1  84 LAKLAYYaVLLFTLQFAFGVWGPNAISD 111
                 4444444344444444444444444444 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.01
   Colicin_V  21 fvrevlsllgwvvafvvasllypslaellaelilspalaaiiaflllfllvllivsllgallsklvsktglglldrllGaifGll 105
                 + r +++++ +vva+++a    + ++ +l+ l+  ++la + a+++l l+v++++  +g   +  ++++ +  l  ++G ++  +
  KIR66034.1 120 LPRAFIAIVIVVVAAAIANAVRDLVTGFLGGLSYGRVLADVTAIFILALGVIAALNQVGIATTV-TTPVLIAVLATVAGILIVGV 203
                 557899*************************999******************999999988776.88888888888888765444 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  11.4     0.003        13      18     148 ..      33     200 ..      19     214 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.003
     DUF2070  18 llliillalligllaflssk....................................lfgillfglpalvaflltlpvlrilggrltykrslflalltel 80 
                 +++i++++ li+ ++  +                                      + ++llf+l + + +   + + ++++g + +   +f+a+++ +
  KIR66034.1  33 FIVILVVGWLIAKAVLKIVDaalervgfdraverggvrralertkydasdilaklaYYAVLLFTLQFAFGVWGPNAISDLIRGVVSWLPRAFIAIVIVV 131
                 44444444444444444433567777777777777777777777777777888888999**************************99999999999998 PP

     DUF2070  81 ivviis.llaillsallqalvllalvlslalvfalrllvlvavsdesllkavlpaliqpllailllvly 148
                 ++++i   +  l++ +l  l++  ++ +++++f+l l v+ a+ +  + + v   +++ +la ++ +l+
  KIR66034.1 132 VAAAIAnAVRDLVTGFLGGLSYGRVLADVTAIFILALGVIAALNQVGIATTVTTPVLIAVLATVAGILI 200
                 8876541455566666699999999999********************999988777777777777776 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   2.8    0.0073        33      10      48 ..      17      55 ..       8      93 .. 0.58
   2 ?   -0.4   1.0      0.28   1.3e+03      18      38 ..     125     145 ..     119     153 .. 0.60
   3 ?   12.4   0.8   3.1e-05      0.14       7      94 ..     174     260 ..     161     270 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0073
      HemY_N 10 yrietslvvavlllvllfvllylllrllrlllrlparvr 48
                +++  s++++v  +++++v+l++ + + +++l++  ++ 
  KIR66034.1 17 TDMWRSVLLFVPRAIAFIVILVVGWLIAKAVLKIVDAAL 55
                555556666666666666666666666666666633332 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.28
      HemY_N  18 vavlllvllfvllylllrllr 38 
                  a++++v++++++ ++  l++
  KIR66034.1 125 IAIVIVVVAAAIANAVRDLVT 145
                 455555555555555555555 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 3.1e-05
      HemY_N   7 wggyrietslvvavlllvllfvllylllrllrlllrl.parvrrwrrrrrerkarealseGlialaeGdfarAekaaakaaklsea.pll 94 
                 +++  i t++++ vl++vl+ v+ +l++ + ++l+r   +r+  w +r       +al+e   a a G+    +++a + a++++a p  
  KIR66034.1 174 LNQVGIATTVTTPVLIAVLATVAGILIVGVGGGLVRPmQNRWEGWLDRAA--EESRALREHRQAQATGRGDVERRMADRGAERARAmP-E 260
                 6677899999999**********999999999999953889999966555..456788888888888998888999999888887754.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       996  (0.0555525); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 2268.47
//
Query:       KIR66035.1  [L=124]
Description: hypothetical protein TK50_12345 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.037   14.2   0.0      0.044   14.0   0.0    1.2  1  DUF3333   Domain of unknown function (DUF3333)


Domain annotation for each model (and alignments):
>> DUF3333  Domain of unknown function (DUF3333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.4e-06     0.044      15      87 ..       7      82 ..       6     114 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-06
     DUF3333 15 rlyGiaAialallfLviLlvsIvskGltAFtq.teitleveldaeeidpkg.k.aeeskklatanyeklirdalka 87
                r+ G +A+  a ++L++L vsI + Gl A  +   +  ev+  a+ +  +     +  +  a a+y + +rda ++
  KIR66035.1  7 RATGRSAVDSASSALAVLTVSIGTAGLAAAATcPGLLAEVDQHAAAVRDALgGdRRPLTPAALAGYAEGVRDAARE 82
                899***********************98865414677777777774444332325555666777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 875.40
//
Query:       KIR66036.1  [L=147]
Description: hypothetical protein TK50_12350 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0011   19.0   0.5     0.0022   18.0   0.1    1.6  2  DUF1110   Protein of unknown function (DUF1110)


Domain annotation for each model (and alignments):
>> DUF1110  Protein of unknown function (DUF1110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.2e-07    0.0022     116     179 ..      23      85 ..       8      91 .. 0.90
   2 ?   -1.4   0.0      0.11     2e+03      22      40 ..     110     129 ..     105     137 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.2e-07
     DUF1110 116 eakedaeeAyasvdrCrghLdavllLLdhpelPgVddfieeEraaAvgdleaAigkaeegtela 179
                 ea  +  eA ++v+r rghL +   L  h +l   dd +e+ raa ++++ + i++  +g++++
  KIR66036.1  23 EALGKLSEALETVERARGHLYTLHQLVGHADL-MLDDAVEKFRAAGHDVIADRIATDLLGRNVI 85 
                 56677889************************.79****************9999988888776 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.11
     DUF1110  22 esvrekLaaaear.leapmr 40 
                 +++r++L+a  ++  ea m+
  KIR66036.1 110 REARDELVAGRRHlYEAEMK 129
                 67888888888886666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1138.09
//
Query:       KIR66037.1  [L=70]
Description: hypothetical protein TK50_12355 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.08   12.3   3.1      0.094   12.1   3.1    1.0  1  DUF4407   Domain of unknown function (DUF4407)
       0.12   12.3   0.0       0.16   12.0   0.0    1.2  1  ODC_AZ    Ornithine decarboxylase antizyme


Domain annotation for each model (and alignments):
>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.1     1e-05     0.094      24      59 ..      20      55 ..      17      59 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1e-05
     DUF4407 24 allAalsgayAlytvlksplllallvGllwgllIfn 59
                +llAa+ + +A++++++ ++l++l+v+l+++++I++
  KIR66037.1 20 FLLAAVQAPVAAKFATDDSWLFSLCVALMVATVIIA 55
                799*******************************97 PP

>> ODC_AZ  Ornithine decarboxylase antizyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.8e-05      0.16      79     109 ..      13      41 ..       8      47 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.8e-05
      ODC_AZ  79 raLqwvGfelvtldawavneeldvtsekwlf 109
                 r L w+Gf l++++a++       t+++wlf
  KIR66037.1  13 RRLAWLGFLLAAVQAPV--AAKFATDDSWLF 41 
                 78***************..567778888998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 471.04
//
Query:       KIR66038.1  [L=87]
Description: hypothetical protein TK50_12365 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       177  (0.00987227); expected 358.6 (0.02)
Passed bias filter:                      124  (0.00691617); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 732.96
//
Query:       KIR66039.1  [L=153]
Description: cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-17   64.5   0.6    1.4e-17   64.2   0.6    1.2  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
    4.7e-08   33.4   2.9    5.9e-08   33.1   2.9    1.1  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra


Domain annotation for each model (and alignments):
>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.6   1.5e-21   1.4e-17       1     121 [.      10     123 ..      10     134 .. 0.87

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 1.5e-21
                     ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE...EEEECSTTSSCEEEEEEEEEEETTTEEECTTCCCCCEEEEEEEECTECCEEE.... CS
  Polyketide_cyc   1 vpapadqvyalvadvesypeflphcssvevleeaesglsadlevgfggltesftarvtldppeeitfklvegdfkslegkWtieslppnsg.... 91 
                     v++p+ ++y++++++e +p+f+ ++++v++l ++ +    +++v  +g++++f+a++t++ p+e             + +W+++ + +++g    
      KIR66039.1  10 VSVPIRTAYDQWTQFEEFPHFMEGVQEVRQLTDTKT----HWTVEIAGVKREFDAEITEQLPDE-------------RVAWRSTGGTQQAGvvtf 87 
                     689********************************7....9***********************.............**********96667777 PP

                     ......CEEEEEEEEEEEE-SSCHHHHHHHHHHHHH CS
  Polyketide_cyc  92 ......gtrtkvalevdfkfaspllgalvgqvaerv 121
                            tr++++le+++ + ++  g+ +g v +r+
      KIR66039.1  88 hrldeaNTRVTLQLEFEPHGVVEQAGDKLGVVDRRA 123
                     888977888888888888777777777777666665 PP

>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   2.9   6.6e-12   5.9e-08       4     139 ..       4     131 ..       1     135 [. 0.80

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 6.6e-12
                      EEEEEEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSESTSSSTTTEEEEECCCS.SEEEEEEEEEETTTTEEEEEEE.SSS-TSEEEEEEEEE CS
  Polyketide_cyc2   4 vtvsvviaappekVwalvsdfenwprWhpevarveleggggpargvegtvrvggr.gtvreelvevdpegrllsyrivkpvpvanyvatwtvtp 96 
                      vt+ v++ +p  ++++  ++fe++p  +++v++v+  + + +   +++tv  +g  +    e++e  p   ++++r     ++++  + +t++ 
       KIR66039.1   4 VTEHVDVSVPIRTAYDQWTQFEEFPHFMEGVQEVRQLT-DTK---THWTVEIAGVkREFDAEITEQLP-DERVAWRS---TGGTQQAGVVTFHR 89 
                      8999****************************885443.444...4599999998888*******99*.9999****...688999999***** PP

                      CCET.EEEEEEEEEEE.E--TT--HHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  97 dggg.trvtwtgefda.gplggpfekpaaakavkgdleagLerLk 139
                       ++  trvt + ef++ g + + + + +    v ++ +  Ler+k
       KIR66039.1  90 LDEAnTRVTLQLEFEPhGVVEQAG-DKL--GVVDRRAKGDLERFK 131
                      88665**********955554444.333..455666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1166.18
//
Query:       KIR66040.1  [L=138]
Description: hypothetical protein TK50_12375 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-09   36.4   0.2    6.8e-09   35.8   0.2    1.3  1  DUF2795   Protein of unknown function (DUF2795)


Domain annotation for each model (and alignments):
>> DUF2795  Protein of unknown function (DUF2795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.2   3.8e-13   6.8e-09       7      44 .]      87     125 ..      84     125 .. 0.97

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3.8e-13
     DUF2795   7 PatKdeLveyArrngApdevleaLeaLP.dreYespaeV 44 
                 P +++ Lv  Ar+n Apd+++ aLe+LP   +Y+++ eV
  KIR66040.1  87 PGDREALVANARDNDAPDDLVAALEGLPpGTRYQTVSEV 125
                 889***********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1013.90
//
Query:       KIR66041.1  [L=134]
Description: cation transport regulator ChaB [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-20   72.4   0.8    5.6e-20   71.7   0.8    1.4  1  ChaB      ChaB
    2.5e-06   27.3   0.0    4.1e-06   26.6   0.0    1.3  1  Rho_N     Rho termination factor, N-terminal domain
  ------ inclusion threshold ------
      0.023   15.1   0.0      0.042   14.2   0.0    1.4  1  Mso1_C    Membrane-polarising domain of Mso1


Domain annotation for each model (and alignments):
>> ChaB  ChaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.8   9.3e-24   5.6e-20       1      60 []       7      61 ..       7      61 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 9.3e-24
        ChaB  1 LPesvresLpehAqeifveafnsaleeYddesdeerAhrvAwaavkekYekdedgkWekk 60
                LP+++r+s pe+Aq+++ ++++sa+e+Y+   ++erAhr+A+aavk+++ek+ +++We+k
  KIR66041.1  7 LPSTLRRS-PEKAQRTWEKTHDSAVETYG---EGERAHRTAFAAVKHEFEKV-GDHWEPK 61
                8*******.*******************9...9*******************.*****98 PP

>> Rho_N  Rho termination factor, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   6.9e-10   4.1e-06      10      38 ..      95     123 ..      91     127 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 6.9e-10
                 HHHHHHHTT-TTGGGS-HHHHHHHHHHGG CS
       Rho_N  10 LraiAkelgienysrlRKqdLIfaIlkaq 38 
                 L+a+A++l+++++sr++K +L+ aI ka 
  KIR66041.1  95 LMAVARKLDVPGRSRMTKPELVKAIEKAN 123
                 99*************************96 PP

>> Mso1_C  Membrane-polarising domain of Mso1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   7.1e-06     0.042      14      44 ..      10      40 ..       5      46 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.1e-06
      Mso1_C 14 tYtRSssRlqdmynssrdqsipgaGynsqSY 44
                t  RS+ ++q +++++ d++++  G   + +
  KIR66041.1 10 TLRRSPEKAQRTWEKTHDSAVETYGEGERAH 40
                456*******************999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1054.72
//
Query:       KIR66042.1  [L=477]
Description: succinate-semialdehyde dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-125  419.8   1.5   1.2e-125  419.6   1.5    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.012   14.7   0.0      0.017   14.2   0.0    1.2  1  LuxC      Acyl-CoA reductase (LuxC)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  419.6   1.5  1.4e-129  1.2e-125       7     462 .]      19     467 ..      12     467 .. 0.98

  Alignments for each domain:
  == domain 1  score: 419.6 bits;  conditional E-value: 1.4e-129
                 SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH CS
      Aldedh   7 etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelae 105
                 +++ v +Pa+g+++ +vp ata++v +av+aA+   ++wa+++++eRa+ L++aad++++ ++ela++ t+e+Gkpla+ar+ ve  + +lr yaela 
  KIR66042.1  19 GELVVRDPADGHPVSTVPVATADEVGKAVEAARGVAPGWAATDPAERAAALHRAADAVQAAAQELAAAVTAEMGKPLADARGGVEAGVGTLRQYAELAP 117
                 567899********************************************************************************************* PP

                 HHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH-T CS
      Aldedh 106 klegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealvehp 204
                    g++l   +++  ++  +P Gvv+aItPWN P++++++ l +al++GN+v++KP+e+tp++ +lla++++e  lP+gvl+++tg g+evg+al+   
  KIR66042.1 118 VRGGRTLLGGAESIDFMAPQPRGVVAAITPWNDPVAVSCGLLGAALVTGNAVLYKPSERTPATGWLLARALDE-VLPPGVLSLLTG-GAEVGAALAG-G 213
                 ****99888789*************************************************************.7***********.*********9.6 PP

                 TESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TTS CS
      Aldedh 205 evdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpld 303
                 +vd+v+ +G t++gr+ia+aaa++  +v+lE GG +pl+v + +D   a+e+++ gaf naGQ+C+a++r++v+++++++fv++lv +a++l+vg ++d
  KIR66042.1 214 DVDVVAHVGATATGRQIAAAAARTGAKVLLENGGSDPLVVDAGVDPVWAAEQAALGAFANAGQICVAVERIYVHRDVAEDFVDALVRRAEALRVGPGRD 312
                 9************************************************************************************************** PP

                 TT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEEE CS
      Aldedh 304 edtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagvf 402
                 ++t++GPl++++++++v+++v  a++ ga+l  Gg      +  g+f+  tv+ +++++m++++eE+FGPV++v+ ++++ ea++ a d++yGLaa+v 
  KIR66042.1 313 PATELGPLVDRRHRDHVHGQVTAAVAGGARLRAGG---VLPDGPGAFYPATVVVDCRHEMTLVREETFGPVAPVVVVDSFSEALRCAADSPYGLAATVL 408
                 ***********************************...67899******************************************************** PP

                 -SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 403 tkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 t ++++a+r+ ++l +G+v +N    ga+   +    + Sg G   g+e l+e+t +k+v
  KIR66042.1 409 TGSMSHAQRAWRELPVGTVKVNAVFGGAPGG-AAQPRRGSGQGFGYGPELLDEFTATKAV 467
                 ************************9999999.9999**********************87 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.9e-06     0.017      83     196 ..     132     241 ..     128     301 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.9e-06
        LuxC  83 syekaqprglvlhvlsgNvpllpvmsilqglL.vknvnllkvSssdpflaaallksladvdenhtladslsvvyfksgdtkleeeiv.qnaDvvvawGg 179
                  +++ qprg+v  +++ N p+     +l ++L ++n+ l k+S   p +   l++ l +v +       ls +    g  ++   +   ++Dvv + G 
  KIR66042.1 132 DFMAPQPRGVVAAITPWNDPVAVSCGLLGAALvTGNAVLYKPSERTPATGWLLARALDEVLPP----GVLSLL---TGGAEVGAALAgGDVDVVAHVGA 223
                 58999***************998888886655179**********************999985....777887...44445544444488888888888 PP

        LuxC 180 eeaikaise.klkpgkql 196
                  ++ + i++  +++g+++
  KIR66042.1 224 TATGRQIAAaAARTGAKV 241
                 888888887666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3392.93
//
Query:       KIR66043.1  [L=255]
Description: glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-30  104.5   0.0    6.9e-30  104.1   0.0    1.1  1  Glycos_transf_2  Glycosyl transferase family 2
    1.4e-14   54.5   0.0    1.7e-14   54.3   0.0    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
  ------ inclusion threshold ------
       0.07   12.6   0.0       0.14   11.6   0.0    1.4  1  Glyco_transf_21  Glycosyl transferase family 21


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.0   1.2e-33   6.9e-30       1     144 [.      17     167 ..      17     190 .. 0.87

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 1.2e-33
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCH.C-TTEEEEEESSS-HHHHHHHHHHHH--SS...EEEEEESSE CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelak.edprvrvirreenvGkagalnaglraatgd...yilflDaDd 90 
                      +vv+ptyNe+ +l+ ++e+lla  p p ++++v+DD+S+D+t e++++la   ++rv v++r  ++G+++a+  g+ +a      y++ +DaD+
       KIR66043.1  17 TVVVPTYNEAGNLPVLVERLLAL-PLPGLKVLVADDNSPDGTGEVADKLAIeHPDRVQVVHRAGKEGLGRAYVDGIGRALDGgaeYVAQMDADL 109
                      69*********************.******************************************************9988899********* PP

                      EE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS....EEEECCHCCCCH CS
  Glycos_transf_2  91 epdpdwleklvealekdgadvvlgqrprifgetdeiernkrv....generlyfkerk 144
                       ++p+ l+ +++al  ++a+vv+g+r++ +g  de ++ +r     + n  + +  r 
       KIR66043.1 110 SHPPEALPGMLGALLSTQAGVVIGSRYVPGGQLDEAWPLYRRalsgWANLYVHTLLRV 167
                      *************************************999876654333333333333 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   2.8e-18   1.7e-14       3     175 ..      15     187 ..      13     250 .. 0.80

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 2.8e-18
  Glyco_tranf_2_3   3 dlavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravk...sdlvll 93 
                      +l+v+Vpt+ne+  l  ++e lla + p ++v v +d+s ++t eva+ la ++pd rv+vv++a    + g  ra+++++ ++     ++v+ 
       KIR66043.1  15 RLTVVVPTYNEAGNLPVLVERLLALPLPGLKVLVADDNSPDGTGEVADKLAIEHPD-RVQVVHRAG---KEGLGRAYVDGIGRALdggAEYVAQ 104
                      59******************************************************.9****7765...556677888888776657678**** PP

  Glyco_tranf_2_3  94 vDdDtvvePdtlkrllqffltpkvgavgtpvfl..lnrstlvsalgalefaerhlrflaarralgvltlnGsgslirrevlkel 175
                      +D+D    P++l+ +l ++l+ ++g+v +++++   + + +++ l++  +  +      + +++++  l+  +  +r++ l+++
       KIR66043.1 105 MDADLSHPPEALPGMLGALLSTQAGVVIGSRYVpgGQLDEAWP-LYRRALSGWANLYVHTLLRVRIRDLTAGFKIWRADALRDI 187
                      *******************9*********99995425555555.3333444444434444444444444444445555555555 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.3e-05      0.14      32     117 ..     100     188 ..      95     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.3e-05
  Glyco_transf_21  32 dllvisDsdvrvkpdyLeellaaledpkvglVtslpvgsdak..glaaaleaafl...ntlagvlqaklsglgfavGksmalrreaLeaiG 117
                      +++ + D+d   +p++L  +l+al ++++g+V +  ++ + +   ++    +a+    n +  +l +   +++  +  + ++r +aL++iG
       KIR66043.1 100 EYVAQMDADLSHPPEALPGMLGALLSTQAGVVIGSRYVPGGQldEAWPLYRRALSgwaNLYVHTLLR--VRIRDLTAGFKIWRADALRDIG 188
                      7999****************************99888554443367776666665332333333333..3555566667778888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1745.23
//
Query:       KIR66044.1  [L=148]
Description: polyketide cyclase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-13   48.9   2.1      1e-12   48.5   2.1    1.0  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
    2.5e-09   37.4   0.1    2.6e-09   37.3   0.1    1.1  1  AHSA1            Activator of Hsp90 ATPase homolog 1-like pro
     0.0039   17.4   0.4     0.0048   17.1   0.4    1.3  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra


Domain annotation for each model (and alignments):
>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   2.1   1.7e-16     1e-12       7     138 ..       5     137 ..       2     141 .. 0.86

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 1.7e-16
                      EEEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSESTSSSTTTEEEEE.CCCS....SEEEEEEEEEETTTTEEEEEEE.SSS-TSEEEEEEEE CS
  Polyketide_cyc2   7 svviaappekVwalvsdfenwprWhpevarveleggggpargvegtvr.vggr....gtvreelvevdpegrllsyrivkpvpvanyvatwtvt 95 
                      ++vi+app++V+++++d  +++ W  + + v+ ++  +p  +v+ +++ ++g      +   ++++ +p +++l  +++  +p++  ++ +t++
       KIR66044.1   5 EKVIQAPPQQVFDVLADGWTYSDWVVGTVHVRDVDDAWP--RVGTRLHhKAGPwpfsLQDASTVLACEP-PHRLVLKAG-LWPAGEATVVFTLE 94 
                      678*********************999998876666999..66667776888645442267899999**.9******95.9************* PP

                      ECCET.EEEEEEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  96 pdggg.trvtwtgefdagplggpfekpaaakavkgdleagLerL 138
                      p+g+g trv++  ef+a ++ +++++ + +  +  + +++L+rL
       KIR66044.1  95 PVGDGvTRVRIGEEFAA-GPLRWVRTKLNDLVLHQRNKETLRRL 137
                      *****9**********7.6779**99999999999999999998 PP

>> AHSA1  Activator of Hsp90 ATPase homolog 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   4.4e-13   2.6e-09       2      97 ..      10     110 ..       9     142 .. 0.75

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 4.4e-13
                 S-HHHHHHHHH-HHHHHHH..EEEEEEEE--...STTEEEEEEETTTSEEEEEEEEEEEEETTTEEEEEEEEETSETEEEEEEEEEEEE.ETTEEEEEE CS
       AHSA1   2 apperVfraltdpellkrW..ftlteaemdl...rpGgkfrlrdspdgkefgnegeylevvpperlvytwrledepeeeestvtielee.egggTrltl 94 
                 app++Vf++l d      W   t+ + ++d    r+G + + +++p   + +   ++l+++pp+rlv++ +   +p+ +e+tv+++le+  +g Tr+++
  KIR66044.1  10 APPQQVFDVLADGWTYSDWvvGTVHVRDVDDawpRVGTRLHHKAGPWPFSLQDASTVLACEPPHRLVLKAG--LWPA-GEATVVFTLEPvGDGVTRVRI 105
                 9******************66444444444477899*****988899999999999*************54..5565.5**********55555**998 PP

                 EE..E CS
       AHSA1  95 th..t 97 
                  +  +
  KIR66044.1 106 GEefA 110
                 77552 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.4   8.1e-07    0.0048       1      52 [.       8      59 ..       8     121 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.1e-07
                    ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE...EEEECSTTSSCEE CS
  Polyketide_cyc  1 vpapadqvyalvadvesypeflphcssvevleeaesglsadlevgfggltes 52
                    ++ap++qv++++ad   y++++ + + v+ +++a  ++  +l+++ g+ + s
      KIR66044.1  8 IQAPPQQVFDVLADGWTYSDWVVGTVHVRDVDDAWPRVGTRLHHKAGPWPFS 59
                    78************************99999988653333444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1048.93
//
Query:       KIR66045.1  [L=324]
Description: glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-08   32.2   0.0      1e-07   31.7   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    0.00028   21.3   0.1    0.00069   20.0   0.0    1.7  2  Glyco_trans_1_4  Glycosyl transferases group 1
     0.0011   19.3   0.0     0.0028   18.0   0.0    1.7  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.7e-11     1e-07      74     171 ..     203     297 ..     191     298 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.7e-11
                      GGGEEECCHSSSHHHHHHCESEEEEEESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHH CS
  Glycos_transf_1  74 nviflgevsredleellknadifvlpsisEgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlge 167
                      +v  +  v++e++++ l +  ++++ +++ ++G++l+EAm++g+pv+a ++  +   v ++  G+l   +  ++l  a r++l+d+e + r g 
       KIR66045.1 203 RVASHDDVPQERMHAELGRRRAYLHLCRWTSLGLSLIEAMTIGMPVVALATTEAVVAVPPEA-GALSTRV--DDLLGAARRFLDDPEAAGRAGA 293
                      555666789999*************************************9877666666555.***9999..******************9999 PP

                      HHHH CS
  Glycos_transf_1 168 nark 171
                      +ark
       KIR66045.1 294 AARK 297
                      9997 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.6   9.7e+03      53      67 ..     142     156 ..     129     162 .. 0.66
   2 !   20.0   0.0   1.2e-07   0.00069      55     134 .]     202     284 ..     164     284 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.6
                      -T.TEEEE---THHH CS
  Glyco_trans_1_4  53 leerveftGfvedla 67 
                      +++ ve+tG+++ la
       KIR66045.1 142 VAPAVEWTGELDRLA 156
                      457788888885555 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 1.2e-07
                      .TEEEE---..THHHHHHHH-SEEEE--..---SHHHHHHHHTT-EEEE-TGGGTTT--...TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  55 erveftGfv..edlaellaaadvfvaPs..egfglkllEamaaglpvVatdvggiaevv...gengllvppgdpealaeailrLled 134
                      +rv  +  v  e + + l + + ++      ++gl+l+Eam  g+pvVa ++    +vv    e+g l     +++l  a  r l+d
       KIR66045.1 202 DRVASHDDVpqERMHAELGRRRAYLHLCrwTSLGLSLIEAMTIGMPVVALATTE--AVVavpPEAGALST--RVDDLLGAARRFLDD 284
                      66888888875559999999999999886669******************9843..33334668898887..688888888877765 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.7e-07    0.0028       3      89 ..     226     311 ..     224     314 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.7e-07
  Glyco_trans_1_2   3 LnpsrsespnlrlfEaaacGafaltddaegleelftpgkevilfedleelaekiryllanpeerraiaeaarervlaehtydhraeq 89 
                      L++ r  s+ l l Ea+  G ++++ ++++    + p+  + l   +++l+ + r++l++pe + + ++aar+ ++ ++ +++ +++
       KIR66045.1 226 LHLCRWTSLGLSLIEAMTIGMPVVALATTEAVVAVPPE-AGALSTRVDDLLGAARRFLDDPEAAGRAGAAARKAARDRYGLERFLAD 311
                      6777778899999*************776655555555.8888889*********************************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2276.91
//
Query:       KIR66046.1  [L=242]
Description: phosphoheptose isomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-21   75.6   0.1    5.1e-21   75.1   0.1    1.2  1  SIS_2     SIS domain
    0.00056   19.8   0.1      0.002   18.0   0.0    1.9  2  SIS       SIS domain


Domain annotation for each model (and alignments):
>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.1   5.7e-25   5.1e-21      25     138 .]      39     152 ..      21     152 .. 0.88

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 5.7e-25
                 HHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-BTTEEEE--GGGSSSSST..THHHHHTT-TTHHHHHHHHTT-..-TT-EEEEE-SS--SHHHHH CS
       SIS_2  25 aeliadslenggkvlvfGsGhSaalaeelaaragglaeferialpalalhtdaeatkssalerdegyakqilrlvrl..kpgDvLlviSnsGnnavvve 121
                    +a+ l++gg++lv G+G+Saa a++l a+++g    +r  l a+alh+++  ++ +a+ +d gy++ ++r+vr+  +p D+Ll +S+sG + ++v+
  KIR66046.1  39 GGELAHRLAAGGRLLVAGNGGSAAEAQHLTAELVGKLRDDREPLSAIALHAET--SALTAIGNDYGYDEVFARQVRAhgRPDDILLLMSTSGASVNLVA 135
                 5668999********************************************87..777777777777777777766555******************** PP

                 HHHHHHHHT-EEEEEE- CS
       SIS_2 122 aaeaakergmkviAlts 138
                 aa a+++ g++  A+t+
  KIR66046.1 136 AAHAGRDAGLRCWAFTG 152
                 ***********999997 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.24   2.1e+03       6      24 ..      50      68 ..      46      72 .. 0.78
   2 !   18.0   0.0   2.2e-07     0.002      43     110 ..     107     174 ..      93     188 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.24
                SEEEEEESHHHHHHHHHHH CS
         SIS  6 kriyvlGaGtsyaiakela 24
                 r++v G G s+a a+ l 
  KIR66046.1 50 GRLLVAGNGGSAAEAQHLT 68
                599999***9999888765 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 2.2e-07
                 HHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEEEECHC CS
         SIS  43 lkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadlalyinaepet 110
                 +  +v a+ ++dd+++l s+sg + +lvaaa   +  g ++ a+T+ + +pla  ++++l+i++++  
  KIR66046.1 107 FARQVRAHGRPDDILLLMSTSGASVNLVAAAHAGRDAGLRCWAFTGPTPNPLADACHETLAIASPDSQ 174
                 5566778889***************************************************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1571.17
//
Query:       KIR66047.1  [L=494]
Description: D-beta-D-heptose 1-phosphate adenosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-26   91.2   1.2    1.2e-25   90.5   1.2    1.3  1  PfkB             pfkB family carbohydrate kinase
      3e-13   50.2   0.0    4.6e-13   49.6   0.0    1.2  1  CTP_transf_like  Cytidylyltransferase-like
    4.1e-05   23.1   0.2    4.1e-05   23.1   0.2    1.6  2  Phos_pyr_kin     Phosphomethylpyrimidine kinase
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.25   11.2   0.0    1.4  1  FAD_syn          FAD synthetase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   1.2   2.6e-29   1.2e-25       4     301 ..       5     297 ..       3     298 .. 0.89

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 2.6e-29
                 EEEEEEEE..EEEEEECSSH...TTSEE.EESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEE CS
        PfkB   4 vvviGeal..idliavsekl...egelv.evktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglaliv 96 
                 vvv+G++l  +d+++v+++l    + +v  ++t + ++GGag+  Av +a +ga+va+++a+ dD  G++l+e+l+++gv++  +    +  t+ ++ +
  KIR66047.1   5 VVVVGDILldRDVEGVVNRLcpdSPVPVlDESTAVDRPGGAGL-AAVFAAAQGAEVALVTALADDAGGARLAELLAAAGVQVYALP-LRG-ATCEKIRL 100
                 79999999999**********99888888*************5.78888889******************************7777.333.57888777 PP

                 ETTTSEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHHCTESEEEEEHHHHH CS
        PfkB  97 vdedgertivfnrgaaadltkeeleededlleeadllyisgllsselpeavleelaeaaknggtfdpnlldplgaqfkeallellaladllkpneeEle 195
                   + g+  +  +rg aa +  e++e ++ ll+ a+ + +s     + +  + + +  aa +g+   p++ dp +     +  +++++++l++pne+E +
  KIR66047.1 101 HAR-GRVLLRHDRGGAAGEPGEPSEAVLRLLATASAVLVSD----YGRGVARQPALRAALAGT-RAPVVWDPHP-----RGPAAVPGVHLATPNESEVR 188
                 776.58999999**999999999999999999999999998....777777777777777777.7999******.....46899*************** PP

                 HHHTSCT..HSHHHHHHHHHHHHHTTS.SEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHT CS
        PfkB 196 altgekl..edieealaalhklkakga.ktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvq 291
                 +l++++      + a + +++l  +     v vtlG +Gal+++ + +  v ++p+    Dt GAGD f++  + al++g+ + ea+++a++ A+  v 
  KIR66047.1 189 ELVKAAPgaSRLATASRGAQELRRRWRaGAVTVTLGGDGALLCHAGSTPLVVPAPASAEGDTCGAGDRFAATAAIALSRGALVSEAVQAAVTEASGYVA 287
                 *****998888888888899998888789***************7777777777*****************************************9999 PP

                 SSSSSTCSCC CS
        PfkB 292 kkgaiaslpt 301
                   g++a+lp+
  KIR66047.1 288 AGGVAAALPA 297
                 9999988775 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0     1e-16   4.6e-13       2      93 ..     336     426 ..     335     439 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 1e-16
                      EEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-...SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHHHHHHHTTTTEEEEEEEHH CS
  CTP_transf_like   2 agGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkk...kplasaeeRlemlelakevdevisvdpweltrevlkklkpdklylvigad 92 
                      +gG+FD++H GH + le a++l++  l+v+v+sd ++   k   +p+++  +R + l ++ +vd v+++d+ +++   l+ l+pd  ++v g+d
       KIR66047.1 336 TGGCFDLLHAGHVATLEAARQLGDC-LVVCVNSDASVAGLKgpdRPVVPQGDRSRLLAALGCVDAVLVFDEPTPEA-ALTWLRPD--VWVKGGD 425
                      79***********************.***********999669********************************7.9*******..******9 PP

                      H CS
  CTP_transf_like  93 v 93 
                       
       KIR66047.1 426 Y 426
                      6 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.5       1.5   6.8e+03       1      18 [.      40      57 ..      40      66 .. 0.55
   2 !   23.1   0.2   9.2e-09   4.1e-05     117     225 ..     174     279 ..     171     289 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.5
                  ETTSSSHHHHHHHHHHHT CS
  Phos_pyr_kin  1 DssGGAGiqADlktfsal 18
                  D  GGAG+ A   +++  
    KIR66047.1 40 DRPGGAGLAAVFAAAQGA 57
                  566899988844444433 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 9.2e-09
                   GGG-SEEE-BHHHHHHHHT..---SSHHHHHHHHHHHHH.TT-SEEEEEEGGS-SSSEEEEEEEE.TSSEEEEEEEE----S--BTHHHHHHHHHHH CS
  Phos_pyr_kin 117 lplatvitPNlpEaeaLlg..ekikteedmkeaakkllk.lgakaVlikGghlegeeavvtdvly.dgeeveeleaerietknthGtGCtlssaiaa 209
                   +p +++ tPN  E+++L++    ++ ++++ + a++l++   a aV ++ g    + a    +l+ +g++   ++a+  ++ +t G+G+ +++  a 
    KIR66047.1 174 VPGVHLATPNESEVRELVKaaPGASRLATASRGAQELRRrWRAGAVTVTLGG---DGA----LLChAGSTPLVVPAPASAEGDTCGAGDRFAATAAI 263
                   67899**************766677999**********98899999998664...233....5776899999************************* PP

                   HHHCTSSHHHHHHHHH CS
  Phos_pyr_kin 210 elakgesleeAvkkAk 225
                    l++g  + eAv+ A 
    KIR66047.1 264 ALSRGALVSEAVQAAV 279
                   ******9999999885 PP

>> FAD_syn  FAD synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.6e-05      0.25       8      83 ..     333     403 ..     327     408 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.6e-05
     FAD_syn   8 avvtlGnFDGvHlGHqallkkaveaakekglpsvvvtFephPrevlakekaparLttleeklelleelg.vdavlvv 83 
                  v t G FD +H GH a l+ a+++      ++vv + +   ++v   + ++  + ++ ++ +ll++lg vdavlv+
  KIR66047.1 333 VVATGGCFDLLHAGHVATLEAARQLG----DCLVVCVNSD--ASVAGLKGPDRPVVPQGDRSRLLAALGcVDAVLVF 403
                 4566689*********9988777665....4555555444..33333334455588999999999999888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3264.99
//
Query:       KIR66048.1  [L=233]
Description: short-chain dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-36  123.8   2.3    2.2e-35  121.9   2.3    1.7  1  adh_short        short chain dehydrogenase
    1.1e-27   97.1   0.8    1.8e-27   96.4   0.8    1.3  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    2.5e-06   27.5   3.7     0.0003   20.8   3.7    2.2  1  KR               KR domain
    2.1e-05   24.1   0.1    3.5e-05   23.4   0.1    1.4  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.28   11.0   1.4          1    9.1   0.8    2.0  2  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   2.3   6.2e-39   2.2e-35       2     193 ..      11     188 ..      10     190 .. 0.95

  Alignments for each domain:
  == domain 1  score: 121.9 bits;  conditional E-value: 6.2e-39
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 +vlvtG+ssG+G a++ ++ak+G + vv+dr++  +    +        +  +++D++d +++ea+ ++ +++ g+ld++v+ AGi  +g  +++  ++
  KIR66048.1  11 TVLVTGGSSGLGAAVVAAVAKAGGRPVVLDRQAP-A----D-------GVPWVECDLADTRAAEAATRHLAERSGGLDAVVTAAGIDVPGRLADVPGDT 97 
                 79*****************************943.3....2.......37789********************************************** PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTH CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelrek 193
                 w+r++ v l ++  ++ra+lp  l++ +G++v+v+S+ g ++v   +aY+A+K++v+g+tr+la ela + + v+ ++PG+++T++  e+ ++
  KIR66048.1  98 WDRIVTVDLLATAAVVRAALPW-LEAARGNVVTVASTLGVKAVSDATAYCAAKFGVVGFTRALAAELAGS-VGVTLLVPGGMRTAFFDERDAQ 188
                 *********************9.77********************************************8.*************999887665 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.8     5e-31   1.8e-27       4     182 ..      19     185 ..      16     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: 96.4 bits;  conditional E-value: 5e-31
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdrald 100
                   sg+G+a++ a+a++G + v+ d++  a           g   +ecD +d+ + ea+ ++++e+ g+lD +v +agi  +  g++++++ + +dr++ 
    KIR66048.1  19 SGLGAAVVAAVAKAGGRPVVLDRQAPA----------DGVPWVECDLADTRAAEAATRHLAERSGGLDAVVTAAGIDVP--GRLADVPGDTWDRIVT 103
                   566666666666666666666666665..........47778*************************************..**************** PP

                   HHTHHHHHHHHHHHH.HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGS CS
  adh_short_C2 101 vnlyslfllakaalp.lmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgi 182
                   v+l +++++++aalp l +++g++v+++s+ + ++v++ +ay+aaK +++++tr+lA+el+   + v    pg ++T   ++ 
    KIR66048.1 104 VDLLATAAVVRAALPwLEAARGNVVTVASTLGVKAVSDATAYCAAKFGVVGFTRALAAELAG-SVGVTLLVPGGMRTAFFDER 185
                   ***************555566*****************************************.9************9775543 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   3.7   8.4e-08    0.0003       2     153 ..      11     149 ..      10     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 8.4e-08
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 t+l+tGG  gLG +++   a+ g r +vl  R+a+   +              v +v++D++d  a ea+ +++ ++ + +  v+ aAg+   + l+++
  KIR66048.1  11 TVLVTGGSSGLGAAVVAAVAKAGGRPVVL-DRQAP---A------------DGVPWVECDLADTRAAEAATRHLAERSGGLDAVVTAAGIDVPGRLADV 93 
                 789********************999887.45522...1............25899******************************************* PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH--TT-HHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled...esldffvlfSSiagllgsagqanYaaaN 153
                   +++++++   + ++  + ++  +        +v+++S  g+      ++Y aa 
  KIR66048.1  94 PGDTWDRIVTVDLLATAAVVRAALPwleAARGNVVTVASTLGVKAVSDATAYCAAK 149
                 **********9999998888887766656677889999999999999999999885 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   9.7e-09   3.5e-05       1      95 [.      12     105 ..      12     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 9.7e-09
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HH....HHHHHHHHH.T-SEEEE--S---HHHHHHSHHHHHHHHTHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrs....alerlfkee.qpdavihlAavggvaassedpadfieknlqg 94 
                 +lVtG++  +G+a+v a++++g + ++ldr+      a  + + +ve+dl d      a++ l ++  + dav+ +A++  +++ ++ p d++++ + +
  KIR66048.1  12 VLVTGGSSGLGAAVVAAVAKAGGRPVVLDRQ------APADGVPWVECDLADTRaaeaATRHLAERSgGLDAVVTAAGIDVPGRLADVPGDTWDRIVTV 104
                 79*****************************......33445699*******98666566777777799***********************9954443 PP

                 H CS
   Epimerase  95 t 95 
                  
  KIR66048.1 105 D 105
                 3 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.8   0.00029         1      40      62 ..       9      31 ..       2      43 .. 0.72
   2 ?   -0.5   0.0       0.3   1.1e+03       6      33 ..     123     149 ..     121     160 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00029
                     -SEEEEESTSSHHHHHHHHHHHH CS
  Eno-Rase_NADH_b 40 pkkvLviGaStGYGLAsriaaaf 62
                      ++vLv G+S+G G A   a+a 
       KIR66048.1  9 GPTVLVTGGSSGLGAAVVAAVAK 31
                     479*********99775554443 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.3
                      EETTEESS--HHHHHHHHHHHHHHHHHS CS
  Eno-Rase_NADH_b   6 irgficltahPaGcaknveeqieyvksq 33 
                       rg++++ a   G++ +v++ ++y+ ++
       KIR66048.1 123 ARGNVVTVASTLGVK-AVSDATAYCAAK 149
                      578888888888875.577777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1487.11
//
Query:       KIR66049.1  [L=324]
Description: glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-28   98.4   0.0    6.5e-28   97.7   0.0    1.3  1  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0   3.6e-32   6.5e-28     108     221 ..     149     261 ..     109     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 3.6e-32
                     -EEEEE---TTGGGS--HHHHHHHHHHHHHTT-EEEE---GGGH.HHHHHTTS-HHHHTTEEE-TTTS-HHHHHHHHHTSSEEEEESSHHHHHHH CS
  Glyco_transf_9 108 pyivflpgaskdaKrWpeekyaelaealqekgyqvvLfgsaeae.eeeiaeriaagleekavnllgktsLeelaallakadlvvgnDSGlmHlAa 201
                      + v+ pg++ +aKrWp+ ++a++a+al  +g++vv++gsa+++  + ++ r a gl  +++ l+g+t+L  laal+a+a+lvv+ D+G++HlA+
      KIR66049.1 149 GVSVVHPGSKIPAKRWPAGRFAAVARALAGRGHRVVVTGSADERaLAGRVARRA-GLA-PDAVLAGRTDLGGLAALVAHARLVVSGDTGVAHLAT 241
                     45688999999******************************9963233333333.333.59********************************** PP

                     HTT--EEEEESSS-TTSS-- CS
  Glyco_transf_9 202 AldrpviaLYgptdpkrtgp 221
                       ++p++ L+gp +p+++gp
      KIR66049.1 242 GYGTPSVVLFGPVPPTEWGP 261
                     ******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2356.61
//
Query:       KIR66050.1  [L=327]
Description: DNA topoisomerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-28   98.0   0.0    5.8e-28   97.7   0.0    1.0  1  Topoisom_I      Eukaryotic DNA topoisomerase I, catalytic cor
  ------ inclusion threshold ------
      0.014   15.3   0.0       0.02   14.7   0.0    1.2  1  Glyco_hydro_19  Chitinase class I


Domain annotation for each model (and alignments):
>> Topoisom_I  Eukaryotic DNA topoisomerase I, catalytic core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0   6.5e-32   5.8e-28       4     206 ..      82     288 ..      79     296 .. 0.93

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 6.5e-32
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S.-HHHHHHHHHHHHHHHH--------.-TTS-----GGG-BGGGEEE-TT.SEEEEEEE-GGG-E CS
  Topoisom_I   4 lkgekdfkKYekarkLkkvvekiredykkklksk.eilekqlatavylidklaLrvGnek.eeeeadtvGccsLrvehvklsekektitldFlGKdsir 100
                 +++++d +K++++ + ++ +  +re++ ++l+ +   ++++lat+++l+d  ++rvG+++     + t G+ +Lr eh + s++   + + F  K  ++
  KIR66050.1  82 WRQQRDEAKFDHVLEVAQRLPVLRERVGHDLTGRgLNRDRVLATVTRLLDMGMFRVGSDQyAVGDDATFGVATLRPEHAR-SRG-GCVVFAFPAKGGVE 178
                 689*****************************998999**********************55566679************.555.5899********** PP

                 EEEEEE--HHHHHHHHHHHTT--TTSBTTT........T--HHHHHHHHTTTS.TT--TTHHHHHHHHHHHHHHHHH..--------TTHHHHHHHHHH CS
  Topoisom_I 101 yfntvkvdkqvyknlkifckkkkkgeevFd........kintsklNkyLkelm.egLsAKvFRTYnASitlqeqLkklekievdesnvaekikayneAn 190
                 +  +++ d+q  ++l+ + +++++ +++F         +++++++N+yL++    +++AK+FRT+ A++   ++L         + +v++  +a+ + +
  KIR66050.1 179 QVRRIE-DPQLCRVLSNLRRRRRAADRLFGywdgrgwrDVRSDEVNEYLRDASgGEMTAKDFRTWHATVLAATELAGH----APARSVTARRRAVAAVM 272
                 *99876.89*********************9*********************9889*******************995....67889************ PP

                 HHHHHHHT-EE-XXXX CS
  Topoisom_I 191 reVAilcnhqrsvpkq 206
                 r+VA l++++ +v ++
  KIR66050.1 273 RQVAELLGNTATVART 288
                 ***********99765 PP

>> Glyco_hydro_19  Chitinase class I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.3e-06      0.02       8      73 ..     223     287 ..     217     293 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.3e-06
  Glyco_hydro_19   8 eqllkhrnddacpakgfytydafiaaaksfpgfgttGdddtrkkeiaaflaqtshettGgsataed 73 
                     ++ l+       +ak+f t++a + aa   +g + +   ++r++ +aa + q + e  G+ at + 
      KIR66050.1 223 NEYLRDASGGEMTAKDFRTWHATVLAATELAGHAPARSVTARRRAVAAVMRQVA-ELLGNTATVAR 287
                     5566666667789*************************************9986.55566555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2394.22
//
Query:       KIR66051.1  [L=147]
Description: HxlR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   79.7   0.0    2.3e-19   69.0   0.0    2.1  2  HxlR          HxlR-like helix-turn-helix
     0.0054   16.8   0.1       0.01   15.9   0.1    1.5  1  HTH_20        Helix-turn-helix domain
     0.0074   16.2   0.1      0.012   15.6   0.1    1.4  1  PadR          Transcriptional regulator PadR-like family
  ------ inclusion threshold ------
      0.012   15.5   0.1      0.023   14.6   0.1    1.4  1  MarR          MarR family
      0.014   15.2   0.4      0.031   14.1   0.4    1.6  1  MarR_2        MarR family
       0.03   14.3   0.0      0.043   13.8   0.0    1.4  1  HTH_Crp_2     Crp-like helix-turn-helix domain
      0.032   14.3   0.1      0.045   13.8   0.1    1.3  1  Replic_Relax  Replication-relaxation
       0.11   12.2   0.2        0.2   11.3   0.2    1.4  1  GntR          Bacterial regulatory proteins, gntR family
       0.14   12.0   0.1        2.1    8.2   0.1    2.2  1  MerR          MerR family regulatory protein
       0.14   12.5   0.0       0.22   11.8   0.0    1.3  1  DUF2513       Hypothetical protein (DUF2513)


Domain annotation for each model (and alignments):
>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00086       1.5       2      22 ..      33      54 ..      32      55 .. 0.91
   2 !   69.0   0.0   1.3e-22   2.3e-19      18      88 ..      63     133 ..      60     136 .. 0.96

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00086
                HHSTTHHHHHHHHTT.S-EEHH CS
        HxlR  2 iggkWkllilvellk.gkkRfs 22
                i +kW +l+l +l + g++Rf+
  KIR66051.1 33 IADKWVTLVLAALGSdGSHRFG 54
                789**********988****96 PP

  == domain 2  score: 69.0 bits;  conditional E-value: 1.3e-22
                 -EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHHHHHHHHHH CS
        HxlR  18 kkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelkkwgeeyle 88 
                 + R+sel+r l ++sqkmL+q+Lr Le+dgl+ r v p+vP+ v Y+lt+ G+sl++ +  +k w+e++++
  KIR66051.1  63 PLRYSELSRLLAGVSQKMLTQTLRSLERDGLVTRAVTPTVPVTVTYELTALGHSLHQTMRGVKGWAEAHMD 133
                 57*****************************************************************9987 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   5.7e-06      0.01      21      56 ..      60      96 ..      40     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.7e-06
                TCTTB-HHHHHHHH.TS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 21 raegltaselaerl.dlskntlsyHLrvLeeagLvev 56
                ++++l  sel ++l ++s++ l + Lr Le+ gLv++
  KIR66051.1 60 DPRPLRYSELSRLLaGVSQKMLTQTLRSLERDGLVTR 96
                5678889*******99*******************97 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   6.4e-06     0.012      34      71 ..      81     116 ..      66     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.4e-06
                 HHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCH CS
        PadR  34 lYpaLkrLekeglveseweesgegpprkyYrlTdaGrr 71 
                 l ++L++Le++glv++  +++   p + +Y+lT+ G++
  KIR66051.1  81 LTQTLRSLERDGLVTRAVTPT--VPVTVTYELTALGHS 116
                 5579*************9985..8************86 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   1.3e-05     0.023      27      49 ..      74      96 ..      62     100 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-05
                HTS-HHHHHHHHHHHHHTTSEEE CS
        MarR 27 lgvskstvtrvldrLekkGlieR 49
                 gvs+ ++t +l+ Le++Gl++R
  KIR66051.1 74 AGVSQKMLTQTLRSLERDGLVTR 96
                489*******************9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   1.8e-05     0.031      20      54 ..      58      97 ..      38     101 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-05
                S....EEEHHHHHH.HHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2 20 r....dltvgelar.rlglsksavsrilkrLvaaGLverr 54
                +    +l+ +el r   g+s+  ++++l+ L++ GLv+r 
  KIR66051.1 58 GgdprPLRYSELSRlLAGVSQKMLTQTLRSLERDGLVTRA 97
                044458999*****777********************996 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.4e-05     0.043      21      53 ..      63      96 ..      32     113 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.4e-05
                EHHHHHHHHHTT.SSHHHHHHHHHHHHHTTSEEE CS
   HTH_Crp_2 21 pltqeelAsmlG.ltretvsrilseLkreglisr 53
                pl   el+++l  +++  ++++l+ L+r+gl++r
  KIR66051.1 63 PLRYSELSRLLAgVSQKMLTQTLRSLERDGLVTR 96
                7888899988755*******************95 PP

>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   2.5e-05     0.045      25      80 ..      79     129 ..      61     145 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.5e-05
  Replic_Relax  25 atarrrLarLrelgllsr.lrkrvggarggsepyvYaLtpkGarllaaqraepeprs 80 
                   + + + L+ L++ gl++r +++    +        Y Lt +G+ l++++r+ + ++ 
    KIR66051.1  79 KMLTQTLRSLERDGLVTRaVTPT---VPV---TVTYELTALGHSLHQTMRGVKGWAE 129
                   357889************99999...444...557***********99998555433 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00011       0.2      35      57 ..      75      97 ..      63      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
                TS-HHHHHHHHHHHHHTTSEEEE CS
        GntR 35 gVsrttvReALrrLeaeglverr 57
                gVs   + + Lr Le++glv+r 
  KIR66051.1 75 GVSQKMLTQTLRSLERDGLVTRA 97
                8********************95 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0012       2.1      13      28 ..      82      96 ..      67     101 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0012
                HHHHHHHHHTTSSTSE CS
        MerR 13 prtLRyYEreGLippp 28
                ++tLR +Er GL+ + 
  KIR66051.1 82 TQTLRSLERDGLV-TR 96
                4799********9.43 PP

>> DUF2513  Hypothetical protein (DUF2513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.22      33      94 ..      72     130 ..      58     134 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
     DUF2513  33 aidgyskeeiiyhlkllaeagLieaekkkakssiislvvkrLtweGhdFLdsiRddtvWkkv 94 
                  ++g+s++ + ++l+ l+ +gL+  + + +      +v ++Lt  Gh + +++R  + W+++
  KIR66051.1  72 LLAGVSQKMLTQTLRSLERDGLVTRAVTPTVPV---TVTYELTALGHSLHQTMRGVKGWAEA 130
                 788999999**************9988877766...999*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 989.73
//
Query:       KIR66052.1  [L=288]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-46  157.2   0.0    4.9e-44  150.7   0.0    2.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
      0.023   15.0   0.1      0.054   13.8   0.1    1.6  1  RsdA_SigD_bd  Anti-sigma-D factor RsdA to sigma factor bindin


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.7   0.0   5.5e-48   4.9e-44       3     292 ..      22     286 ..      20     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 150.7 bits;  conditional E-value: 5.5e-48
                   EEE-SSS-ST.....TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE...--SSSTTSSSS-HHHHHHHHHH CS
  Aldo_ket_red   3 glGtwqlgsk....eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv...dlrdaeiksglskenireslee 92 
                   g+G++ql ++     + +   al++lr a+  Gi+++Dt+++Yg++   +l+ eal       +++ i+tKv   ++  + +++   +e++r+s++e
    KIR66052.1  22 GYGAMQLAGPwvmgPPADHHGALAVLREAVALGITHIDTSDAYGPHVTNRLIREALHP---YPDSLHIVTKVganRDQRGGWPPARDPESLRRSVHE 115
                   899*****999986677778899***********************************...************9999999***************** PP

                   HHHHHT-S-EEEEEE-S--TTS-....HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EE CS
  Aldo_ket_red  93 slkrLgtdyvDllllHrpdpslp...sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpl 186
                    l +Lg+d +Dl+ l   d + p    ++e++++l+el+++G+ir++G+Sn + eq+ +a  ++  +iv+vq+ ynl  ++++  l+++++++gv+ 
    KIR66052.1 116 NLDNLGLDVLDLVNLRLGDAEGPrpgPVAEAFETLVELQQQGLIRHLGLSNATPEQVAEA--QAIAPIVCVQNMYNLA-HRQDDALIDALAEQGVAY 209
                   **************9999999888899*******************************99..****************.****************** PP

                   EEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----H CS
  Aldo_ket_red 187 iaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklse 283
                   +++ plg G+                              ++ ++l ++a+  g  ++ +al+++l +++++ +ipg+s++++l++n++   l ls+
    KIR66052.1 210 VPFFPLG-GFTP----------------------------LQSSALAAVAARLGAAPMSVALAWLLRRSPNILLIPGTSSVAHLRENVAGAGLALSA 277
                   ******9.8877............................8899***************************************************** PP

                   HHHHHHHHH CS
  Aldo_ket_red 284 eevaeldel 292
                   +++aeld++
    KIR66052.1 278 DDLAELDKV 286
                   ******986 PP

>> RsdA_SigD_bd  Anti-sigma-D factor RsdA to sigma factor binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1     6e-06     0.054       6      20 ..     193     207 ..     190     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6e-06
                   HHHHHHHHHHHTT-- CS
  RsdA_SigD_bd   6 ardDaLLDALAgrgp 20 
                   + dDaL+DALA++g 
    KIR66052.1 193 RQDDALIDALAEQGV 207
                   78*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2105.34
//
Query:       KIR66053.1  [L=167]
Description: hypothetical protein TK50_12465 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   14.2   4.5      0.027   14.7   2.8    1.7  2  TetR_C_31  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_C_31  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   2.8   1.5e-06     0.027      43     104 ..      31     103 ..      25     116 .. 0.74
   2 ?   -3.3   0.0      0.59   1.1e+04      44      59 ..     150     165 ..     148     166 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHHHHHHHHHHHHHCS.S-HHHHHHHHHHHHHHHHHHHHHSG..........TS-HHHHHHHHHHHH CS
   TetR_C_31  43 alarlrralrealaallaalGl.pdpeeaarllvaaldGllldrLagp..........aadpraevrellral 104
                 a a+  +  r+ +a+  a l + +  +e++  lvaa+ G +++r+ +p           adpra+++++l ++
  KIR66053.1  31 ASAAEHDSARRTMAENAAGLESiATGRESGSPLVAAVAGEIVSRVGDPeageelpviaPADPRAVIEDVLNRA 103
                 4444445555555555555666656667*******************98887777776667788888888776 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.59
                 HHHHHHHHHHHHHHHH CS
   TetR_C_31  44 larlrralrealaall 59 
                 ++++ r++r++l ++l
  KIR66053.1 150 VSDSERRFRDRLSQVL 165
                 5666777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1116.08
//
Query:       KIR66054.1  [L=543]
Description: ATP-dependent DNA helicase RecQ [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-20   71.7   0.0    1.3e-17   64.1   0.0    2.4  2  Helicase_C    Helicase conserved C-terminal domain
    8.8e-15   54.9   0.0    2.7e-14   53.3   0.0    1.7  2  DEAD          DEAD/DEAH box helicase
    3.6e-12   46.8   0.4      7e-12   45.9   0.4    1.4  1  RecQ_Zn_bind  RecQ zinc-binding
    2.2e-06   27.3   0.0    4.6e-06   26.2   0.0    1.5  1  DUF3553       Protein of unknown function (DUF3553)
    0.00021   21.3   0.0    0.00037   20.5   0.0    1.2  1  ResIII        Type III restriction enzyme, res subunit
     0.0034   17.4   1.6      0.009   16.0   0.1    2.4  2  HRDC          HRDC domain
  ------ inclusion threshold ------
      0.018   14.4   0.0        0.1   11.9   0.0    2.1  2  HEM4          Uroporphyrinogen-III synthase HemD
      0.043   13.7   0.0      0.082   12.8   0.0    1.4  1  TrmB          Sugar-specific transcriptional regulator TrmB
      0.081   12.6   0.0       0.43   10.3   0.0    2.2  2  AAA_30        AAA domain


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.014        28      18      73 ..      64     122 ..      50     128 .. 0.77
   2 !   64.1   0.0   6.6e-21   1.3e-17       3     110 ..     227     332 ..     225     333 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.014
                 EEEEEESSHH.HHHHHHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  18 kilifvntid.rlekvklllekk..gikvavlhgelpqnereeileqfnkgesdvLiat 73 
                  ++++++    + +++  l+e++  +++++++ ++ +  ++ e++e+ ++g+  +L  t
  KIR66054.1  64 PTVVISPLLAlQQDQIAALNERRrpELRAVRISSDETPAQQAEAIEEVRAGRAEFLFIT 122
                 55666666663333356776666789**************************9998766 PP

  == domain 2  score: 64.1 bits;  conditional E-value: 6.6e-21
                 HHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHH CS
  Helicase_C   3 leallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsy 100
                 +++ll+ll  +e+++  +i+v+t++ +e+ +   l+  g+ +  +hg +p+  r e  e+f ++++ +++at++ ++Gid p++  V+++ lp++++sy
  KIR66054.1 227 WRRLLALL--REDRRPGIIYVPTRRAAEElAAR-LTDAGFPAEFYHGGMPAGARGELHEAFLADRVPIMVATSAFGMGIDKPNIAWVVHMALPDSPDSY 322
                 67788887..9999999********99864222.3477************************************************************* PP

                 HHHHTTSSST CS
  Helicase_C 101 iqriGRtgRa 110
                  q iGR+gR 
  KIR66054.1 323 FQEIGRAGRD 332
                 *********6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   1.3e-17   2.7e-14       2     173 ..      25     188 ..      24     191 .. 0.82
   2 ?   -1.7   0.0       1.1   2.2e+03      49      75 ..     240     266 ..     229     297 .. 0.64

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1.3e-17
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH...TT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld...ng 97 
                 + Q +a+ ++++ +d lv  +TG+GK+++++ip+   +      +g  +++++P+ +L ++++  l+++  + +lr++ i ++++  +q ++++   +g
  KIR66054.1  25 PNQLAAMRAVMKRRDALVVLPTGAGKSAIYQIPAS--L-----IPG-PTVVISPLLALQQDQIAALNERRRP-ELRAVRISSDETPAQQAEAIEevrAG 114
                 6799******************************9..3.....344.6899******************996.79999998888888888888433344 PP

                 .CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 .vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                  +++++ tp++l++  +  +++  +  ++ +DEa++++ +  +f++++ ++ + ++     g+    v++l+AT++  v
  KIR66054.1 115 rAEFLFITPEQLANPDRMAEVRSLKPALVAIDEAHCISAWghDFRPDYLALGHLIE---GIGRPP--VVALTATASPPV 188
                 7************966555655666689************999*****99666663...333323..*******98555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.1
                 EEEEEESSHHHHHHHHHHHHHHTTTST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  49 kalivePtreLaeqtlnnlkkfkkyid 75 
                   +i +Ptr  ae+ + +l+  + +++
  KIR66054.1 240 PGIIYVPTRRAAEELAARLTDAGFPAE 266
                 568899***999999999988776544 PP

>> RecQ_Zn_bind  RecQ zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.4   3.5e-15     7e-12      15      66 .]     430     479 ..     416     479 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 3.5e-15
  RecQ_Zn_bind  15 eesekekeaelekleamlaycentteCrrkllleyFgeeaaeeeCgnCDnCl 66 
                    e+e+++ + +++ + m a++e+t  Cr ++ll yFge+ ++  Cg+CDnCl
    KIR66054.1 430 AEAERQQTVTRSRTDMMRAFAETTG-CRGQALLAYFGEQMTKV-CGHCDNCL 479
                   4578888999999********8777.************88887.*******6 PP

>> DUF3553  Protein of unknown function (DUF3553)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   2.3e-09   4.6e-06      11      45 ..     500     534 ..     495     536 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2.3e-09
     DUF3553  11 kqpdWGlGqVqSaiagrvtvnFenaGkkvidaavi 45 
                  +p+WG G V S  ++r+tv Fe++G k+++ +v+
  KIR66054.1 500 RHPEWGPGMVLSYEEDRMTVLFEEVGYKTLSVRVV 534
                 479**************************999988 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.9e-07   0.00037       4     168 ..      23     183 ..      21     185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.9e-07
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--.. CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke....igkkvsgdkkka.. 96 
                 lr+ Q  a+++++      +++ +l++++TG+GK+ ++ ++ ++l        ++++ p ++l +  + ++++   ++  +           d+  a  
  KIR66054.1  23 LRPNQLAAMRAVM------KRRDALVVLPTGAGKSAIY-QIPASLIPG----PTVVISPLLALQQDQIAALNERRRPELRAvrisS------DETPAqq 104
                 7899999999997......5678************986.677777775....89*****************999999886544321......2222223 PP

                 ...........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS...T......TTHHHHHT---SEEEEEESS CS
      ResIII  97 ....kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak..k......swreilekfkeavllglTAT 168
                     +e ++  +++l++t ++l ++         e ++ +  ++ iDEaH ++a   +      +  +++e + +  +++lTAT
  KIR66054.1 105 aeaiEEVRAGRAEFLFITPEQLANPD-----RMAEVRSLKPALVAIDEAHCISAWghDfrpdylALGHLIEGIGRPPVVALTAT 183
                 446789999*****************.....667778888889*******9999754144545566667888888888888888 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2         1     2e+03      10      26 ..     226     243 ..     225     244 .. 0.88
   2 !   16.0   0.1   4.5e-06     0.009      32      63 ..     366     397 ..     363     401 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1
                 HHHHHHH.HHHTS-HHHH CS
        HRDC  10 ewReelA.reedvppyvv 26 
                  wR+ lA  +ed +p+++
  KIR66054.1 226 RWRRLLAlLREDRRPGII 243
                 7******99999999988 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 4.5e-06
                 HHHHHHH---SHHHHHTSTTT-HHHHHHHHHH CS
        HRDC  32 LleiAeklPttleeLlqiegvgkrklekygee 63 
                 L ++ +++P+t++eL++ +g+g+rkl +y + 
  KIR66054.1 366 LAALLRRKPATKKELREATGLGPRKLGQYLAL 397
                 88999************************885 PP

>> HEM4  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.71   1.4e+03     122     144 ..     180     204 ..     163     206 .. 0.68
   2 ?   11.9   0.0   5.1e-05       0.1      92     178 ..     215     297 ..     212     300 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.71
                 E..-SS.S--HHHHHHHHHTTEEEE CS
        HEM4 122 l..lrgeiarddlaegLeergaevd 144
                 l   +++ +rdd+++ L+ r aev+
  KIR66054.1 180 LtaTASPPVRDDIVARLRLRDAEVV 204
                 2346677789*******99999996 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 5.1e-05
                 ---SEE-..SSSHHHHGGGS-.---EEEEEE-SS.S--HHHHHHHHHTTEEEEEE-SEEEEE-HHHHHHHHHHHHTT--SEEEESSH CS
        HEM4  92 lrvdlvpseegtaegLaeelaeslagkrvlllrgeiarddlaegLeergaevdevevYetvpaeeepeelkealkagevdavvftSp 178
                 l+v++ p e++ ++ L+++l+e+ +++ + ++    a ++la+ L  +g+    +e Y+   + +++ el ea+ a++v + v+tS+
  KIR66054.1 215 LEVAHCPTEDYRWRRLLALLREDRRPGIIYVPTR-RAAEELAARLTDAGFP---AEFYHGGMPAGARGELHEAFLADRVPIMVATSA 297
                 678899***************8777766666655.8*************75...89******************************8 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.1e-05     0.082       9      67 ..     361     422 ..     359     423 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-05
                 HCCCHCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST...TTEEEE--H CS
        TrmB   9 yEakvYlaLlklgpatadeiaeelgvprskvYevLrsLedkGlVerekgr...pklYravdp 67 
                 +E +  +aLl+++pat +e+ e++g+   k  ++L  Le+ G  e + ++     +Y+++++
  KIR66054.1 361 TELRDLAALLRRKPATKKELREATGLGPRKLGQYLALLEQVGAAEPRSRQrigAPRYSPTPV 422
                 5777789**************************************99877677668888876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00022      0.43       2     102 ..      23     153 ..      22     157 .. 0.62
   2 ?   -1.5   0.0      0.88   1.8e+03      49      70 ..     241     265 ..     229     271 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00022
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrvi...glAptgkaAkvLae.......elgieastiakllkrlk......... 81 
                 l+++Q aa++a+++ +d  a+++ p G+GK+ + +  + ++   g +v+   +lA ++ + ++L+e       +      +i +  +  +         
  KIR66054.1  23 LRPNQLAAMRAVMKRRD--ALVVLPTGAGKSAIYQIPASLIP--GPTVVispLLALQQDQIAALNErrrpelrA-----VRISSDETPAQqaeaieevr 112
                 7899************9..666669999***99998888888..545554567788888888888633332221.....22222222222222333344 PP

      AAA_30  82 ....................grarlepgtllivDEagmvdt 102
                                     +++r  +  l+ +DEa  +++
  KIR66054.1 113 agraeflfitpeqlanpdrmAEVRSLKPALVAIDEAHCISA 153
                 45567777777777777766334444457777777776665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.88
      AAA_30  49 viglAptgkaAkvLa...eelgiea 70 
                  i++ pt +aA++La   +++g++a
  KIR66054.1 241 GIIYVPTRRAAEELAarlTDAGFPA 265
                 577889*******993333556666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 3356.52
//
Query:       KIR66055.1  [L=316]
Description: luciferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-50  172.2   6.3    3.8e-50  171.1   6.3    1.5  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1   6.3   2.1e-54   3.8e-50       1     314 []       1     290 [.       1     290 [. 0.88

  Alignments for each domain:
  == domain 1  score: 171.1 bits;  conditional E-value: 2.1e-54
  Bac_luciferase   1 mefgvflptrqggalgaasaslrylvelaraaEelGfdavwvaehhggpgga....ldaftllaalaaaTerirlgtavtply.trhPavlAqqa 90 
                     m++g+fl+ +          ++++l+ +ar aE++Gf+a+w+++h++++  a    +  +++++al+++ + + ++tavt+++ + hPavlAq+a
      KIR66055.1   1 MRIGYFLSSEE--------LTPAQLLGQARGAERAGFEALWISDHYHPWTDAqgqsPFVWSMIGALSQVCS-LPVTTAVTCPTvRIHPAVLAQAA 86 
                     88889999988........89*****************************99**9999999******9986.***********9*********** PP

  Bac_luciferase  91 atLdhlsgGRfglglgtggpaveerrfGv...dhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgpiPvyvaaaspaglela 182
                     at   l +GRf+lg+g+g++ +e   fG+     d r+++l+E+vev+r+lwrg+ v+++G++++v++a+l   p+ + +Pvyv + +p++++la
      KIR66055.1  87 ATSAVLHQGRFVLGVGSGEALNE-HIFGDawpQADVRLEMLEEAVEVMRELWRGGFVNHHGRHYTVEHARLYTLPDAP-PPVYVSGFGPKAVDLA 179
                     ***********************.888999*999********************************777776666544.89************** PP

  Bac_luciferase 183 arhadglllageppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraearaliagldfyaldsegagreaeaaeiqeeedanlwa 277
                     ar++dg+++++ +    a+l++r+ra     g +  d    +++  ++ad+e++  a a +            + ++++ +++ +q   ++++++
      KIR66055.1 180 ARIGDGYVSTSPD----ADLVRRFRA----GGGG--DKPCQAGFKAAYADSEDAGAAIAYE------------RWPNAGVPGELSQVLPSPRHFE 252
                     ***********33....567788887....4442..3334445555555555555555544............44899999999*********** PP

  Bac_luciferase 278 gaadavpdelvaatalvG.tpeqvaerlaayaeagvde 314
                     +a+++v++e++++  ++G +++ + e +++ya+ag+de
      KIR66055.1 253 QAGQLVRPEMMKESFVCGdSADAHLEMIDRYAQAGFDE 290
                     ******************8888*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2116.68
//
Query:       KIR66056.1  [L=95]
Description: acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-24   85.3   0.0    2.6e-24   85.1   0.0    1.0  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
    4.8e-07   30.0   0.0    5.6e-07   29.8   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
     0.0053   16.9   0.0     0.0075   16.4   0.0    1.2  1  Acetyltransf_6   Acetyltransferase (GNAT) domain
     0.0056   17.1   0.0      0.006   17.0   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.013   15.4   0.0      0.015   15.2   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
      0.044   13.8   0.0      0.066   13.3   0.0    1.3  1  Acetyltransf_9   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.0   8.8e-28   2.6e-24       1      80 []      13      90 ..      13      90 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 8.8e-28
  Acetyltransf_CG  1 rfeltldegeevafleYevrkegvldfthTeVpeelrGkGiAkkLvkaalddareeglkvvptCsyvaaylekhpeyadl 80
                     rfe+ +d ++ ++f  Y   +++vl+fthTeV+ +++  G++++L++a ld++re+g +vvp C+++aa++e+hpeyadl
       KIR66056.1 13 RFEILVD-DALAGFTAYL-PRGEVLIFTHTEVDAKFQNMGVGAALMRATLDQVRERGGRVVPRCPFMAAFIERHPEYADL 90
                     8*****9.88*******7.6777*******************************************************97 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.9e-10   5.6e-07      31      97 ..       9      71 ..       2      83 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.9e-10
                    TTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE CS
  Acetyltransf_1 31 eaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikki 97
                    +a + + ++ d+ l+Gf  +l++ +    v +     V+ +++++G+G aL++a ++++re+g++ +
      KIR66056.1  9 PARHRFEILVDDALAGFTAYLPRGE----VLIFTHTEVDAKFQNMGVGAALMRATLDQVRERGGRVV 71
                    4448888999*************99....899999***************************99765 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.5e-06    0.0075      74     130 ..      14      70 ..       5      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.5e-06
  Acetyltransf_6  74 yvlrldgrpvAvalglrsgdrlyywlggydpelaklspgllllweliedaaeeGlrr 130
                     +++ +d+ ++++ + l  g++l++  + +d+ +  +++g  l++ ++++ +e+G r+
      KIR66056.1  14 FEILVDDALAGFTAYLPRGEVLIFTHTEVDAKFQNMGVGAALMRATLDQVRERGGRV 70 
                     67778************************************************9765 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     2e-06     0.006      11      49 ..      19      62 ..       2      88 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2e-06
                    TTEEEEEEEEEEESTCTEEEE....E-GGGTTSSHHHHHHHH...T CS
  Acetyltransf_7 11 dgkivGfialslldaeitrla....VdpeyrgkGiGraLlea...a 49
                    d+   Gf a+ +++  +  ++    Vd ++++ G+G aL++a   +
      KIR66056.1 19 DDALAGFTAYLPRG--EVLIFthteVDAKFQNMGVGAALMRAtldQ 62
                    26667888888874..444664555888*************84430 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   5.2e-06     0.015      38      86 ..      18      69 ..       5      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.2e-06
  Acetyltransf_10 38 eggkivGviel.rdgs..hisllfVdpeyrgqGigkaLleaveeeaekdgik 86
                     +++ ++G+ ++  +g+    ++  Vd +++  G+g+aL+ a +++++++g++
       KIR66056.1 18 VDDALAGFTAYlPRGEvlIFTHTEVDAKFQNMGVGAALMRATLDQVRERGGR 69
                     567899999887777777778999*********************9888765 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.2e-05     0.066      81     122 ..      42      83 ..      31      87 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.2e-05
                     E-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--SSHHHHHT CS
  Acetyltransf_9  81 vapehrgrgvlskLlaraleemreegqplsllfPssipiYrr 122
                     v+++ ++ gv  +L++++l+++re+g +++   P+ +++ +r
      KIR66056.1  42 VDAKFQNMGVGAALMRATLDQVRERGGRVVPRCPFMAAFIER 83 
                     77788999****************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 756.72
//
Query:       KIR66057.1  [L=121]
Description: hypothetical protein TK50_12490 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 839.52
//
Query:       KIR66058.1  [L=274]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-56  186.3  36.5    2.2e-22   78.9   8.9    3.2  3  DUF1206          Domain of Unknown Function (DUF1206)
  ------ inclusion threshold ------
        0.1   12.7   2.9       0.25   11.4   0.8    2.6  2  COX4_pro_2       Bacterial aa3 type cytochrome c oxidase subu
       0.14   10.9   1.4          2    7.1   0.1    2.4  3  DUF2207          Predicted membrane protein (DUF2207)
       0.21   11.5   0.1       0.21   11.5   0.1    3.6  4  DctQ             Tripartite ATP-independent periplasmic trans
       0.67    9.9  11.0       0.36   10.8   4.0    2.9  2  Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus


Domain annotation for each model (and alignments):
>> DUF1206  Domain of Unknown Function (DUF1206)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   8.9   6.1e-26   2.2e-22       1      69 [.      26      94 ..      26      95 .. 0.97
   2 !   44.2   9.0   4.1e-15   1.5e-11       3      69 ..     111     177 ..     109     178 .. 0.96
   3 !   75.5   2.8     7e-25   2.5e-21       1      70 []     203     272 ..     203     272 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 6.1e-26
     DUF1206  1 vGyaarGvvylllgllalqaalggggssasgsdgalatlleqpfGrvllglvglgllgyglwqlveAvt 69
                +G++++Gvv+ll+++lalq+a+g +g++ ++++gal tl+eqp+G++l +++++g+l++++wq++eA+ 
  KIR66058.1 26 AGFIGYGVVHLLFAWLALQIAFGDSGGKDGDQTGALSTLAEQPMGKFLCVAIAVGMLAMAIWQALEAAV 94
                69*********************9999999*************************************85 PP

  == domain 2  score: 44.2 bits;  conditional E-value: 4.1e-15
     DUF1206   3 yaarGvvylllgllalqaalggggssasgsdgalatlleqpfGrvllglvglgllgyglwqlveAvt 69 
                  aar +vyl ++++a+++  ++g+s+a+++++ + +l+e+ +Gr l+gl+gl+l+++g+  ++ +++
  KIR66058.1 111 SAARTLVYLYFAWTAWKVFSNAGSSGADQQEALTGKLMESGGGRLLVGLAGLVLAAIGVGLVIYGWK 177
                 58***************************************************************98 PP

  == domain 3  score: 75.5 bits;  conditional E-value: 7e-25
     DUF1206   1 vGyaarGvvylllgllalqaalggggssasgsdgalatlleqpfGrvllglvglgllgyglwqlveAvtr 70 
                 +Gy+a+Gv+y++ gll++ aa+++++++a+g d+al+tl +q +G++ll+lv+lg++++g++++++ ++r
  KIR66058.1 203 AGYIAKGVAYGIAGLLVVVAAVNYDPEKARGLDAALRTLRDQSYGPFLLALVALGIACFGVYCFLQSRYR 272
                 6*****************************************************************9996 PP

>> COX4_pro_2  Bacterial aa3 type cytochrome c oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.8   7.1e-05      0.25      27      45 ..      69      87 ..      68      88 .. 0.94
   2 ?   -0.8   0.0      0.46   1.7e+03       3      17 ..     186     194 ..     184     195 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.1e-05
  COX4_pro_2 27 ltkwgtlavavllvlmaif 45
                ++k  ++a+av +++mai+
  KIR66058.1 69 MGKFLCVAIAVGMLAMAIW 87
                7899**************8 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.46
  COX4_pro_2   3 egpyetAdeMDyaeH 17 
                 +g      eMD +++
  KIR66058.1 186 TG------EMDAHTQ 194
                 66......9**9988 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.019        68     389     445 ..      26     105 ..       5     109 .. 0.69
   2 ?    0.1   0.0     0.073   2.6e+02     209     239 ..     154     182 ..     135     195 .. 0.61
   3 ?    7.1   0.1   0.00055         2     360     435 ..     176     272 ..     171     274 .] 0.65

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.019
     DUF2207 389 gliilglilillallllvll.......................lvfllilllillliaiivlllfsrllgrrteeGaell 445
                 +++i + ++ ll+++l+  +                       +  +l ++++++++a++++  + + +g+r e G+e l
  KIR66058.1  26 AGFIGYGVVHLLFAWLALQIafgdsggkdgdqtgalstlaeqpMGKFLCVAIAVGMLAMAIWQALEAAVGHRAERGRERL 105
                 22222222222222222222366788999999999999999998888888999999999999999999999999999875 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.073
     DUF2207 209 lillilllilllllllllliklllwkkygre 239
                  +l++l++++l+++ + l+i+   wkk+ r+
  KIR66058.1 154 RLLVGLAGLVLAAIGVGLVIY--GWKKKFRK 182
                 455666666666666666665..35554443 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.00055
     DUF2207 360 wksavkk.kergyfdkkgkkklkklsalglgliilglilillallllvll......................lvfllilllillliaiivlllfsrllg 435
                 wk++ +k  + g +d+  ++ + +l+++g ++   g++ ++++ll++v++                        ++l+ l++l++++++v+++++++ +
  KIR66058.1 176 WKKKFRKhLKTGEMDAHTQTLALRLGTAGYIA--KGVAYGIAGLLVVVAAvnydpekargldaalrtlrdqsYGPFLLALVALGIACFGVYCFLQSRYR 272
                 44444444344777777666666655554443..3333333333333333445899***************9888899999999999999999877665 PP

>> DctQ  Tripartite ATP-independent periplasmic transporters, DctQ component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   4.9      0.49   1.7e+03      63     123 ..      18      86 ..      13      95 .. 0.40
   2 ?    7.5   3.8   0.00098       3.5      25      92 ..      69     132 ..      59     142 .. 0.80
   3 ?   11.5   0.1   5.7e-05      0.21      53     124 ..     143     224 ..     139     226 .. 0.80
   4 ?   -3.1   0.2       1.9   6.8e+03      75      77 ..     256     258 ..     246     270 .. 0.41

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.49
        DctQ  63 rlleliadllallfaavliwagw.......levaaalfeettpvlg....lplwwvy.lvlpigaallalval 123
                 r+lel+a + ++ +++v + ++w       +  +  + + +t++l+     p++ +  +++ +g++++a   +
  KIR66058.1  18 RWLELLARAGFIGYGVVHLLFAWlalqiafG-DSGGKDGDQTGALStlaeQPMGKFLcVAIAVGMLAMA---I 86 
                 6777777776666666544444443454431.2222222333333332222222222112222222222...2 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00098
        DctQ  25 larylfvwlvflgaalalrrgshirvdllverlpprvrrlleliadllallfaavliwagwlevaaal 92 
                 + ++l+v+++  ++a+a+ +    +v    +r  ++  rl+e ia ++  l+ ++++w++w +v++  
  KIR66058.1  69 MGKFLCVAIAVGMLAMAIWQALEAAVG---HRAERGRERLFERIASAARTLVYLYFAWTAW-KVFSNA 132
                 678899999999999999996666665...6789999************************.665544 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 5.7e-05
        DctQ  53 lverl.pprvrrlleliadllallfaavliwagw.......levaaalfeettpvlg..lplwwvylvlpigaallalvala 124
                 l+ +l   ++ rll  +a l+++++++ l+ +gw       l++ +++ +++t +l+     ++   v+   a+ll++va++
  KIR66058.1 143 LTGKLmESGGGRLLVGLAGLVLAAIGVGLVIYGWkkkfrkhLKTGEMDAHTQTLALRlgTAGYIAKGVAYGIAGLLVVVAAV 224
                 5666668888899999999999999**************9988888888888888887667777777777777777777765 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 1.9
        DctQ  75 lfa 77 
                 l +
  KIR66058.1 256 LGI 258
                 111 PP

>> Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.0    0.0001      0.36      94     151 ..      71     127 ..       6     152 .. 0.83
   2 ?    2.4   0.6     0.039   1.4e+02      58     105 ..     160     207 ..     151     263 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
  Abhydrolase_9_N  94 lvllvallvfalllllgrllralvrllarllgrvlprrvaavlgvlvvvvlvvllvdg 151
                      + l+va++v +l ++++++l+a+v   a++ + +l +r+a ++++lv +  ++++  +
       KIR66058.1  71 KFLCVAIAVGMLAMAIWQALEAAVGHRAERGRERLFERIASAARTLVYLYFAWTAW-K 127
                      6789999************************************9999988888754.4 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.039
  Abhydrolase_9_N  58 vvalvvllvalvlaarwQrelralmgaeplgaaeyllvllvallvfal 105
                      + ++++++ + ++   w+++ r+ +++ + +a   +l+l ++++ +++
       KIR66058.1 160 AGLVLAAIGVGLVIYGWKKKFRKHLKTGEMDAHTQTLALRLGTAGYIA 207
                      344455566666667777777777766666666666666666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2055.92
//
Query:       KIR66059.1  [L=144]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-34  116.3  15.0    7.9e-34  116.1  15.0    1.0  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
  ------ inclusion threshold ------
      0.017   13.9   0.1       0.02   13.7   0.1    1.1  1  DUF2207          Predicted membrane protein (DUF2207)
      0.047   13.4   0.2      0.055   13.2   0.2    1.1  1  Tetraspanin      Tetraspanin family
        1.2    8.8   5.7        1.6    8.4   5.7    1.3  1  DUF4131          Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1  15.0   1.8e-37   7.9e-34       2     112 ..      20     134 ..      19     135 .. 0.97

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 1.8e-37
  Phage_holin_3_6   2 elvrrltaqlssLvrteleLakaElkeeakragsgagllgaagvlallalllllvalalala.a..lwlaalivaavllvlagvlalvglkklk 92 
                      elv+r+t+q+s+Lvr+el+La+aEl++++k+ag+g+gl+g++g+lal++l++l++a++l+la +  +w+aaliva+vl+++ag+lalvg+k++ 
       KIR66059.1  20 ELVQRATEQVSRLVRDELALARAELTQKGKHAGIGIGLFGGGGALALYGLGALIAAAILLLAlVvpAWAAALIVAVVLFLAAGILALVGKKQVG 113
                      8********************************************************99998889***************************** PP

  Phage_holin_3_6  93 kakp.lpertieelkedvaal 112
                      +a p +p+++++++++dv+++
       KIR66059.1 114 QAVPpVPAAAVRSVRADVDTV 134
                      *8888*************987 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   4.5e-06      0.02     350     434 ..      19     104 ..       5     116 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.5e-06
     DUF2207 350 akkfkkalkkwksavkk...kergyfdkkgkkklkklsalglgliilglilillallllvlllvfllilllillliaiivlllfsrll 434
                 a+ +++a +++ + v++    +r  +++kgk     ++++g g++++++ l+ l+++++   l  l++++++ +li+++vl+l++++l
  KIR66059.1  19 AELVQRATEQVSRLVRDelaLARAELTQKGKHAGIGIGLFGGGGALALYGLGALIAAAIL--LLALVVPAWAAALIVAVVLFLAAGIL 104
                 555666666666666667776666666776666666666666665555555544444443..77777777777777777777776654 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   1.2e-05     0.055      31     106 ..      35     111 ..      24     140 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.2e-05
                  X.....................XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin  31 aeaalacllsesaedpailaillivvGvllfllgflGcig.alkenkcllltfsllllvlfllelaagilgfvfsdk 106
                  +e ala+++ ++  + a + i+l+  G +l+l g+  +i+ a+     +    +  l+v ++l+laagil++v +++
   KIR66059.1  35 DELALARAELTQKGKHAGIGIGLFGGGGALALYGLGALIAaAILLLALVVPAWAAALIVAVVLFLAAGILALVGKKQ 111
                  5667777778888888888888889899999998777776344445555566789*******************999 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.7   0.00036       1.6       6      49 ..      65     106 ..      58     137 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00036
     DUF4131   6 alvllalllllllllllllrrrprrrvllllllllllallgfal 49 
                 al  l++l+++++lll+l    p +  +l+++++l+la++ +al
  KIR66059.1  65 ALYGLGALIAAAILLLALV--VPAWAAALIVAVVLFLAAGILAL 106
                 4555555555555555555..89999999999999988887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1134  (0.0632495); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1051.98
//
Query:       KIR66060.1  [L=118]
Description: hypothetical protein TK50_12510 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-12   47.7   7.7    1.3e-12   47.7   7.7    2.5  3  DUF3618         Protein of unknown function (DUF3618)
     0.0053   16.5   2.8     0.0058   16.4   1.3    1.6  2  DotU            Type VI secretion system protein DotU
     0.0064   17.1  13.3       0.02   15.5  13.3    1.8  1  DUF883          Bacterial protein of unknown function (DUF883
  ------ inclusion threshold ------
      0.015   15.2   6.7      0.023   14.6   6.7    1.3  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
       0.15   12.1   0.1       0.19   11.8   0.1    1.1  1  CagE_TrbE_VirB  CagE, TrbE, VirB family, component of type IV


Domain annotation for each model (and alignments):
>> DUF3618  Protein of unknown function (DUF3618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   7.7   3.7e-16   1.3e-12       2      46 ..      13      57 ..      12      58 .. 0.96
   2 ?    2.5   0.5     0.049   1.7e+02      33      46 ..      59      72 ..      55      73 .. 0.67
   3 ?    1.1   4.5      0.13   4.7e+02      29      46 ..      66      83 ..      59      84 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 3.7e-16
     DUF3618  2 rdpeeIerdIertRaeLaeTvdeLaaradPkrladrakarvkarv 46
                 d+e+++++I rtR eL+eT+++Laa+ad+k++ +  ++++++r+
  KIR66060.1 13 GDTEALREEIRRTRVELGETMEALAAKADVKARLRSSAEQARGRM 57
                59****************************************997 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.049
     DUF3618 33 rladrakarvkarv 46
                ++a +++arv++++
  KIR66060.1 59 EQAAQTVARVRGQA 72
                56777777777765 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.13
     DUF3618 29 adPkrladrakarvkarv 46
                a+++ +a ++++++++r+
  KIR66060.1 66 ARVRGQAAQGAEAARERA 83
                688999999999999998 PP

>> DotU  Type VI secretion system protein DotU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.34   1.2e+03      26     155 ..      16      25 ..       6      44 .. 0.49
   2 !   16.4   1.3   1.6e-06    0.0058     132     200 ..      45     112 ..      43     115 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.34
        DotU  26 ealrerlveelrafeqrlkaagysaediedaryalcaliDEavlntpwgerseWarepLqvrffnetqgGekfferlerlledpaenldlLevyylcLa 124
                 ealre++++                                                                                          
  KIR66060.1  16 EALREEIRR------------------------------------------------------------------------------------------ 24 
                 344443333.......................................................................................... PP

        DotU 125 LGFeGryrleadgeeelealrqrlyeeirrl 155
                                                
  KIR66060.1  25 ------------------------------T 25 
                 ..............................2 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.6e-06
        DotU 132 rleadgeeelealrqrlyeeirrlrgeaeealsphwqagdeaarrllrrelplwvilalallvllllfl 200
                 rl++  e+ + ++r++ +++++r+rg+a++  +++++  ++++ +l r+++p+ +++a a++ +++l++
  KIR66060.1  45 RLRSSAEQARGRMREQAAQTVARVRGQAAQ-GAEAARERAASGAELGRSPVPWAAVAAGAVATMIVLLI 112
                 566678889****************99995.56666646666666667788887777777666666554 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5  13.3   5.6e-06      0.02       3      93 ..      18     114 ..      16     117 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.6e-06
      DUF883   3 leaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddy......VrenPwqavGiAag.vGlllGlLlar 93 
                 l++e++  + +l e +++ a++a+ +a +lR+ +e++  r+re+++++  +v+ +a + aeaa++         ++P+  +++Aag v+ ++ lL+ r
  KIR66060.1  18 LREEIRRTRVELGETMEALAAKADVKA-RLRSSAEQARGRMREQAAQTVARVRGQAAQGAEAARERaasgaeLGRSPVPWAAVAAGaVATMIVLLIVR 114
                 677888888888888888888777775.6999999999999999999999999999999999999888888877777777777777677788888765 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   6.7   6.3e-06     0.023      80     144 ..      16      86 ..      10      94 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.3e-06
                     HHHHHHHHHCHHCCHHCHCCHCHH......HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH----- CS
  Apolipoprotein  80 eelrerlaadaeelqeqlavyaee......lrerlerhvealkarlapyveelrqklaerleelkeslaph 144
                     e+lre +++   el e++++ a++      lr+++e++ ++++++ a  v ++r + a+ +e+ +e++a  
      KIR66060.1  16 EALREEIRRTRVELGETMEALAAKadvkarLRSSAEQARGRMREQAAQTVARVRGQAAQGAEAARERAASG 86 
                     44444333333333333333333333333377777777777777777777777777777777777776654 PP

>> CagE_TrbE_VirB  CagE, TrbE, VirB family, component of type IV transporter system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   5.3e-05      0.19     130     184 ..      12      66 ..       6      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.3e-05
  CagE_TrbE_VirB 130 iteledlidevasgdvalGayhlslvlfaedkekLdkavseatkllnakGivavk 184
                     + ++e+l +e+++  v+lG+    l+  a+ k++L++++++a+ ++ +++ + v+
      KIR66060.1  12 TGDTEALREEIRRTRVELGETMEALAAKADVKARLRSSAEQARGRMREQAAQTVA 66 
                     67889999*************************************9999887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1310  (0.073066); expected 358.6 (0.02)
Passed bias filter:                      606  (0.0338); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 952.76
//
Query:       KIR66061.1  [L=90]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-27   93.2   6.6    8.6e-27   93.0   6.6    1.0  1  DUF4235   Protein of unknown function (DUF4235)


Domain annotation for each model (and alignments):
>> DUF4235  Protein of unknown function (DUF4235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   6.6   4.8e-31   8.6e-27       1      77 []      10      86 ..      10      86 .. 0.99

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 4.8e-31
     DUF4235  1 ykllglvlglvaGavagkafaavWkkvtge.daPkdpkdedvslrevllfAaisGavlavvrvaadRgtargverltg 77
                yk++g+++gl+aGavag +f++vWk ++g+ +aP  ++ded++++e+l++Aa++Ga+++vvr+a+dRg+a+gv+rltg
  KIR66061.1 10 YKPVGVLMGLAAGAVAGVIFRQVWKVTAGDgEAP-SATDEDRGWGEILAAAALQGAIFSVVRAAVDRGGAVGVRRLTG 86
                8*********************************.*****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 648.79
//
Query:       KIR66062.1  [L=67]
Description: cold-shock protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-31  108.1   0.7    1.5e-31  108.0   0.7    1.0  1  CSD       'Cold-shock' DNA-binding domain
    0.00045   19.9   0.2    0.00067   19.3   0.2    1.4  1  OB_RNB    Ribonuclease B OB domain
  ------ inclusion threshold ------
       0.01   16.1   0.0      0.012   16.0   0.0    1.1  1  S1        S1 RNA binding domain


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.7   2.5e-35   1.5e-31       2      65 ..       3      66 ..       2      67 .] 0.97

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 2.5e-35
                EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEEE CS
         CSD  2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVtk 65
                +GtVkwfna+kgfGFIt + g++dvFvH+saiq++g+r+L+e+q+VeFe+ +g+kgp+A++V+ 
  KIR66062.1  3 QGTVKWFNADKGFGFITVDGGGADVFVHFSAIQTSGYRTLEENQRVEFEIAQGQKGPQAEQVRP 66
                8*************************************************************86 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   1.1e-07   0.00067       7      30 ..      12      35 ..       4      37 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.1e-07
                SSS-EEEEECT.TEEEEE-HHHHT CS
      OB_RNB  7 kkGFGFlipdegkeDifippeqmk 30
                +kGFGF+ +d+g+ D+f++ + ++
  KIR66062.1 12 DKGFGFITVDGGGADVFVHFSAIQ 35
                69****************987665 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.0   0.0   1.9e-06     0.012      19      62 ..      17      54 ..       2      59 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.9e-06
                EEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEE CS
          S1 19 GafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlk 62
                 + V+  +g+++fv+ s +        ++++l ++++v++++ +
  KIR66062.1 17 FITVDG-GGADVFVHFSAIQTS-----GYRTLEENQRVEFEIAQ 54
                344555.5************98.....************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 485.33
//
Query:       KIR66063.1  [L=65]
Description: hypothetical protein TK50_12525 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.026   14.9   5.1      0.036   14.5   5.1    1.2  1  DUF202           Domain of unknown function (DUF202)
      0.028   14.5   2.0       0.44   10.7   1.9    2.0  1  YtpI             YtpI-like protein
      0.048   14.1   0.4      0.051   14.0   0.4    1.0  1  DUF4199          Protein of unknown function (DUF4199)
      0.052   13.1   3.9        1.2    8.8   0.0    2.0  2  PIRT             Phosphoinositide-interacting protein family
      0.064   13.7   2.2       0.19   12.2   1.1    1.8  2  MerC             MerC mercury resistance protein
      0.076   12.8   3.3       0.11   12.2   3.3    1.3  1  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l
        1.2    8.9   7.8        2.2    8.2   2.0    2.0  2  DUF4307          Domain of unknown function (DUF4307)
          2    8.2   8.2       0.97    9.2   2.4    2.0  2  Trp_oprn_chp     Tryptophan-associated transmembrane protein 
        3.3    7.3   6.5        6.1    6.5   6.5    1.5  1  DUF4131          Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   5.1   1.8e-05     0.036      13      65 ..       4      64 ..       3      65 .] 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.8e-05
      DUF202 13 WlRtslalialglallrffl..........tgepsalgkilglilivlgiltllvglvrylrr 65
                WlR +l+l+a+ ++ +   +          t ++ +  ++lg +l+++g++tl++gl+  +rr
  KIR66063.1  4 WLRLTLGLLAVVVGAVWTVQglgyvggsmmTDQRIW--ALLGPVLVLIGLATLWYGLRARRRR 64
                ******999999998855557888888876555555..999***************9988876 PP

>> YtpI  YtpI-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.9   0.00022      0.44      53      81 ..      34      62 ..       6      64 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00022
        YtpI 53 lestvalvvgavflvlGlanlfaGirayk 81
                +++ + +  g v++++Gla l++G+ra +
  KIR66063.1 34 TDQRIWALLGPVLVLIGLATLWYGLRARR 62
                55666777899***************986 PP

>> DUF4199  Protein of unknown function (DUF4199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4   2.6e-05     0.051       3      57 ..      10      63 ..       8      65 .] 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.6e-05
     DUF4199  3 Glilglvwilifll.ilyllglhqilstgpllgllallllllvpflvylalkkyrk 57
                Gl++ +v++++++  + y+ g    ++ + +++ll+ +l+l+  ++++++l++ r+
  KIR66063.1 10 GLLAVVVGAVWTVQgLGYVGGSM--MTDQRIWALLGPVLVLIGLATLWYGLRARRR 63
                99***********9888888886..333478888886666666889******8776 PP

>> PIRT  Phosphoinositide-interacting protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.3    0.0054        11      86     105 ..       2      21 ..       1      24 [. 0.87
   2 ?    8.8   0.0   0.00058       1.2      71     102 ..      27      58 ..      21      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0054
        PIRT  86 sGpaflslGlmllvcGlvwv 105
                  G   l+lGl+ +v+G vw 
  KIR66063.1   2 KGWLRLTLGLLAVVVGAVWT 21 
                 677789*************5 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00058
        PIRT  71 rnstlknkdkevfklsGpaflslGlmllvcGl 102
                 +   +  +d++++ l Gp+++ +Gl  l +Gl
  KIR66063.1  27 YVGGSMMTDQRIWALLGPVLVLIGLATLWYGL 58 
                 5556778999******************9998 PP

>> MerC  MerC mercury resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.6      0.12   2.5e+02      71      99 ..       8      24 ..       2      34 .. 0.50
   2 ?   12.2   1.1   9.4e-05      0.19      26      63 ..      26      63 ..      12      65 .] 0.82

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
        MerC 71 alGllillvalflgteaeetllfgslwqv 99
                 lGll+++v++++             +q 
  KIR66063.1  8 TLGLLAVVVGAVWT------------VQG 24
                44555555555444............344 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 9.4e-05
        MerC 26 pllglsflasellhqvllilvvaigllalvvgyrrhrk 63
                  +g s+++++ ++ +l ++ v+igl++l++g r  r+
  KIR66063.1 26 GYVGGSMMTDQRIWALLGPVLVLIGLATLWYGLRARRR 63
                456677777888999999***************98887 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.3   5.6e-05      0.11      16      60 ..      20      64 ..       6      65 .] 0.69

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.6e-05
  Phage_holin_2_4 16 atggGavvsfaGflasseli.alvGlavAliGlLvnWyYkreanRR 60
                      t+ G  + + G + + + i al+G ++ liGl   Wy  r+  RR
       KIR66063.1 20 WTVQG-LGYVGGSMMTDQRIwALLGPVLVLIGLATLWYGLRARRRR 64
                     33333.455667776666544*****************99999998 PP

>> DUF4307  Domain of unknown function (DUF4307)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.0    0.0011       2.2       3      33 ..       3      34 ..       1      38 [. 0.83
   2 ?    5.8   0.3    0.0061        12       3      27 ..      36      60 ..      34      65 .] 0.70

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0011
     DUF4307  3 rllvillvvlvvvalalvawigysq.gsadvs 33
                 +l++ l++l+vv++a+++++g+ + g + ++
  KIR66063.1  3 GWLRLTLGLLAVVVGAVWTVQGLGYvGGSMMT 34
                6999******************9997666555 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0061
     DUF4307  3 rllvillvvlvvvalalvawigysq 27
                +++++ll+ ++v+++++  w+g++ 
  KIR66063.1 36 QRIWALLGPVLVLIGLATLWYGLRA 60
                5667777778888888888888876 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.4   0.00049      0.97      63      92 ..       2      31 ..       1      38 [. 0.86
   2 ?    3.7   0.4     0.024        48      65      88 ..      37      60 ..      28      65 .] 0.73

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00049
  Trp_oprn_chp 63 rglgrrvvgvllalagagaavaalslltdp 92
                  +g++r  +g+l++++ga+ +v++l  + ++
    KIR66063.1  2 KGWLRLTLGLLAVVVGAVWTVQGLGYVGGS 31
                  79*******************999887665 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.024
  Trp_oprn_chp 65 lgrrvvgvllalagagaavaalsl 88
                   +  ++g +l+l+g+++++ +l++
    KIR66063.1 37 RIWALLGPVLVLIGLATLWYGLRA 60
                  555678889999999999988876 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.5    0.0031       6.1       6      56 ..       4      62 ..       1      65 [] 0.67

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0031
     DUF4131  6 alvllalllllllllllllrr..........rprrrvllllllllllallgfalrapqpna 56
                +l l + ll++ + +++               + +r+++ll+ +l+l++l  +++ +++ +
  KIR66063.1  4 WLRLTLGLLAVVVGAVWT--VqglgyvggsmMTDQRIWALLGPVLVLIGLATLWYGLRARR 62
                334444444444444444..33488889999899999999999999999888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 519.26
//
Query:       KIR66064.1  [L=327]
Description: aldo/keto reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-56  190.7   0.0    3.7e-56  190.5   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.5   0.0   2.1e-60   3.7e-56       2     291 ..      16     313 ..      15     316 .. 0.93

  Alignments for each domain:
  == domain 1  score: 190.5 bits;  conditional E-value: 2.1e-60
                   EEEE-SSS-ST..TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgsk.eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrL 97 
                   +glG+wqlg + +++++++a ++l +a++ G++f+DtA+vYg+g+se+++G++l +   +   + +atK++ r ++ ++ +++en r+  ++s+ +L
    KIR66064.1  16 VGLGAWQLGADwGRVDEADAMAVLAAAVDSGVTFVDTADVYGDGRSEQFIGRFLRS--RPDAGLTVATKMGRRVEQRPEAYTAENFRAWTDRSRANL 110
                   79******************************************************..999************************************ PP

                   T-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGG CS
  Aldo_ket_red  98 gtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliaysplgg 194
                   g+d++Dl++lH+p  ++     v+dal+ lv  G i a+GvS ++ +q   a   +   +++vq+  n lr      +l+++ + gv++ia  pl++
    KIR66064.1 111 GVDTLDLVQLHCPPTAVFADDRVFDALDALVADGRIAAYGVSVETCDQALTA--IARPGVASVQIILNALRLKPLDRVLPAASAAGVGIIARVPLAS 205
                   ******************9***********************9997776655..69999***********9999999******************** PP

                   GTTGTTTSS---SSSCCC-------........TS-HHHHHHHHHHHHHHHH..TT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG-.- CS
  Aldo_ket_red 195 Glltgkyqseedkedkeprkdlkrd........ertsknldaaeelselake..hgvslaqlalryalsqpavgivipgasnieqlednldalel.k 280
                   Gll+g+y++ + + ++++r  +++         +  + + + + ++++la     g ++aq alr++l qp+v++vipga+ +eq++ n++   l +
    KIR66064.1 206 GLLSGRYDEHTTFAPDDHRTYNRHGesfdvgetFSGVDFGTGLAAVRRLAPLvgTGRTMAQFALRWVLDQPGVTVVIPGARDAEQARRNAATAGLaP 302
                   *************9999998877779*****99666666777777777776644788************************************999* PP

                   --HHHHHHHHH CS
  Aldo_ket_red 281 lseeevaelde 291
                   l+++e+a+++ 
    KIR66064.1 303 LTPDELAAVRD 313
                   ******99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2438.77
//
Query:       KIR66065.1  [L=268]
Description: trans-aconitate methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-14   52.9   0.0      8e-14   52.1   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    1.7e-12   47.4   0.0    2.4e-12   47.0   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    6.1e-11   42.8   0.0    9.6e-11   42.2   0.0    1.3  1  Methyltransf_11  Methyltransferase domain
    9.4e-09   35.2   0.0    1.2e-08   34.9   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    2.5e-07   31.3   0.0    4.4e-07   30.6   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    3.3e-07   30.0   0.0    5.1e-07   29.4   0.0    1.2  1  MTS              Methyltransferase small domain
    0.00027   20.9   0.0    0.00041   20.4   0.0    1.1  1  Methyltransf_32  Methyltransferase domain
     0.0048   17.0   0.0     0.0059   16.7   0.0    1.2  1  FtsJ             FtsJ-like methyltransferase
     0.0057   16.0   0.0     0.0087   15.4   0.0    1.2  1  Methyltransf_2   O-methyltransferase domain
     0.0063   16.0   0.0     0.0094   15.4   0.0    1.2  1  Methyltransf_4   Putative methyltransferase
  ------ inclusion threshold ------
        0.2   11.2   0.0       0.26   10.9   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   4.9e-17     8e-14       1      88 [.      33     113 ..      33     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 4.9e-17
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalke 88 
                      v+dlGcG+G+lt+ la+r+++a+v g+D s++m+++a + a    + v+f +gd++d+  +   +D+vvs+  l++++   ++++l +
       KIR66065.1  33 VVDLGCGPGTLTAGLAARWPHARVAGLDASADMIDRAVALA----APVDFAVGDVRDWRPAP-DVDVVVSNALLQWVP--GHRELLTR 113
                      89*****************89********************....69***********8554.7******65599876..44555554 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   1.5e-15   2.4e-12       4     162 ..      13     179 ..       7     181 .. 0.77

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.5e-15
  Methyltransf_23   4 qreeelsdklerllpklraggrvLdiGcGtGillevl.rengf.svtgvDlspeaveiae....kakkaqkdqfdeqeaaepqgkfdlIvlrev 91 
                      +r + + d+l+r++   +++  v+d+GcG G+l+  l +++++  v+g D+s  ++++a          ++  +    ++ p+   d++v++ +
       KIR66065.1  13 ERGRPFHDLLARVP--AERPRAVVDLGCGPGTLTAGLaARWPHaRVAGLDASADMIDRAValaaP----VDFAVGDVRDWRPAPDVDVVVSNAL 100
                      33355667777777..6999***********98888846666689*************9844443....333333345888************* PP

  Methyltransf_23  92 lehvpdppellrqiatllkpgGylllseplaslkedrllld.......w.lylvpagrhisffsarslkelleeaGlev 162
                      l +vp + ell++ a+ l  g++l + +p++ ++  +++l+       w ++l+pa r   + +a  +++ll +aG+ v
       KIR66065.1 101 LQWVPGHRELLTRWAAELPAGAWLAFAVPGNFAAPSHRALHavarggpWaAALAPALRDDPVDDAVGYATLLTRAGCAV 179
                      *****************************99886444444447777776466777766668888888888888888876 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   5.9e-14   9.6e-11       1      92 [.      34     122 ..      34     126 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 5.9e-14
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      +d+GcG G l++ la r   arv g+D s+ m+++a + a +    v+f v+d+++  p +d  +D+vvs+  l++v+ ++++l  +a  L  g
       KIR66065.1  34 VDLGCGPGTLTAGLAARWphARVAGLDASADMIDRAVALAAP----VDFAVGDVRDWrPAPD--VDVVVSNALLQWVPGHRELLTRWAAELPAG 121
                      59*************88889*************999666665....789*******889999..*************99999998877666555 PP

                      E CS
  Methyltransf_11  92 G 92 
                       
       KIR66065.1 122 A 122
                      5 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   7.4e-12   1.2e-08       6      88 ..      32     105 ..      28     156 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 7.4e-12
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnala 88 
                       v+DlGCG G+lt  la    p+a+v G+D s+++i +A + a+      v F +gd+ +  +    d  +D+++sn++l+ ++
       KIR66065.1  32 AVVDLGCGPGTLTAGLA-ARWPHARVAGLDASADMIDRAVALAA-----PVDFAVGDVRDwRP--APD--VDVVVSNALLQWVP 105
                      599**************.6689*******************988.....999********777..565..*******9996555 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   2.7e-10   4.4e-07       1      97 [.      34     122 ..      34     124 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 2.7e-10
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      +++GcG G+l++ l+++ p++++ g+D s+++i++a +  a  +    ++ +++            +D+vv++ +l++++  re+l + ++ L 
       KIR66065.1  34 VDLGCGPGTLTAGLAARWPHARVAGLDASADMIDRAVALAAPVDFAVGDVRDWRPA--------PDVDVVVSNALLQWVPGHRELLTRWAAELP 119
                      59*******************************44444444444433333334333........49*************999999998887766 PP

  Methyltransf_12  95 pgG 97 
                       g+
       KIR66065.1 120 AGA 122
                      665 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   3.1e-10   5.1e-07      23     104 ..      21      98 ..      19     101 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 3.1e-10
                 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEEE- CS
         MTS  23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdlivsN 104
                 Ll  +p+e+ + v+DlGcG G l+a la+++p+a+v  +d++a  ++ a +     ++ v++   dv +  +  ++d++vsN
  KIR66065.1  21 LLARVPAERPRAVVDLGCGPGTLTAGLAARWPHARVAGLDASADMIDRAVA----LAAPVDFAVGDVRDWRPAPDVDVVVSN 98 
                 677788888899*******************************99987644....344577888899888888899999988 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.5e-07   0.00041      23      75 ..      27      77 ..      18      87 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.5e-07
  Methyltransf_32 23 esgaltvvDvGaGkgYLsfvlalkeke.yklkvvgidakeelvekaekraeklg 75
                     ++++  vvD+G+G g L+  la    +  + +v g+da+++++++a ++a+ + 
       KIR66065.1 27 AERPRAVVDLGCGPGTLTAGLAA---RwPHARVAGLDASADMIDRAVALAAPVD 77
                     567899*****************...65899***************99998765 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.6e-06    0.0059      22      80 ..      30      93 ..      12     168 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.6e-06
                T-EEEECT-TTSHHHHHHCCT.T.-SEEEEEES.SSS.....HHHTTEEEECS-CCCSSHHHHHC CS
        FtsJ 22 gktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm.....aplpgvttiqgditdpetiekik 80
                 ++vvDlg++PG  +  l+ r  + ++v ++D    m     a+   v +  gd++d + ++ + 
  KIR66065.1 30 PRAVVDLGCGPGTLTAGLAARWPH-ARVAGLDAsADMidravALAAPVDFAVGDVRDWRPAPDVD 93
                478******************976.********44558765545589999999999988877655 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.4e-06    0.0087      55     158 ..      22     120 ..      17     139 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.4e-06
                     HHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-.HHHHHHHHHHS-----TTEEEEES-TTTS-----SE.EEEESSGGGS-HHHHHH CS
  Methyltransf_2  55 leafdleglkslvDvGGGtGalakaivsayPtikvivfDl.peVveaAkehlsageeervefvgGdffkdslPeaDa.illkrvlhDwsdekcvk 147
                     l+ +  e+ + +vD+G G G l +  ++ +P+ +v  +D  ++ + +A        +  v+f  Gd++ d  P  D+ +++++ l  w  ++ ++
      KIR66065.1  22 LARVPAERPRAVVDLGCGPGTLTAGLAARWPHARVAGLDAsADMIDRAVAL-----AAPVDFAVGDVR-DWRPAPDVdVVVSNALLQWVPGH-RE 109
                     555666677899***************************835788888777.....899********9.55555444245566777888776.56 PP

                     HHHHHHHH--T CS
  Methyltransf_2 148 lLkrvkkalpa 158
                     lL r    lpa
      KIR66065.1 110 LLTRWAAELPA 120
                     66666666665 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.8e-06    0.0094       4      43 ..      32      71 ..      29      79 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.8e-06
                    EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHH CS
  Methyltransf_4  4 vvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlk 43
                     v+++GcG G+++  lA + P+  + G++ + ++++++++
      KIR66065.1 32 AVVDLGCGPGTLTAGLAARWPHARVAGLDASADMIDRAVA 71
                    589********************************99986 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00016      0.26      16      59 ..      32      76 ..      16     116 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
        MetW 16 rvldlGcGdGellellkee.kqvdgrGleldeegvaecvakGlsv 59
                 v+dlGcG G+l   l+ +  + +  Gl+ +++ + ++va    v
  KIR66065.1 32 AVVDLGCGPGTLTAGLAARwPHARVAGLDASADMIDRAVALAAPV 76
                599**********9987652578889*********9999865444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1932.12
//
Query:       KIR66066.1  [L=341]
Description: adenosine deaminase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-84  284.0   0.0    1.9e-84  283.8   0.0    1.0  1  A_deaminase  Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.8   0.0     1e-88   1.9e-84       2     328 .]      11     331 ..      10     331 .. 0.98

  Alignments for each domain:
  == domain 1  score: 283.8 bits;  conditional E-value: 1e-88
                  S-EEEEEEECCCSS-HHHHHHHHHHHCHT..SS-SCCCCCCCCHCHCCHHHHCCHCCCHHCCCHHHTCCCCCCHHHHHHCCCCCHCTTCCCCCCCCSH CS
  A_deaminase   2 lpKvdlHvHldgclnpktllrlakkkgikeldekvveedeklltlqekfesLkeflydlsvdvlvlhwlievvrllavekakdlakdfvkylevifsP 99 
                  lpKv+lHvH+ g+++p+++ +la+++  +    + v++d  +l ++  f+++++f++ +   v+ ++  +e+v +l+ e+a++la+++v+y+e++++P
   KIR66066.1  11 LPKVELHVHHVGSASPRIVAELAARHEGA----SPVPADPDALADYFAFRDFAHFIEVYLSVVDLVR-DPEDVWILTHEVARELARQQVRYAELTVTP 103
                  8************************9965....889999****************************.****************************** PP

                  HHHHHH-GCSTCCHHHHCCCCCCCCCCHCCT-EEEEEECCETT..TCCGHCCCHHHHHHCCCCCCCCCCCCC-TTSTTGGG.HHHHHCCCCHTT-EEE CS
  A_deaminase 100 lfeatagpqlpelevvlkvvdgfdsvedeskvkerlilvksrk..peewseeinelasyyrdytvvnldllndekiepasl.flklraeagkstlllt 194
                   +++++g  +p  ++ ++++d+ + +e++++  + +++++++   +  ++ee+ + + + +  ++ +++l + ++i+++++ f  ++++a++++l+++
   KIR66066.1 104 YSHVRRG--IPAPAFCEAIEDARKRAEADFG-IALRWCFDIPGeaGLPAAEETLRICLDEQPAGLISFGLGG-PEIGVPRPqFAPYFDQARAAGLRSV 197
                  *******..**********************.8999*******88888999*********************.888888888**************** PP

                  EEESSSS-CHHHHHHHHCS--SCECE-GGGGGSHHHHHHHHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-EEEE--BSCCCCT-SHHHHHHH CS
  A_deaminase 195 pHaGEagglehvveAllllkaerigHGvrlrkdpvLqyllalaqiplevcPlSNvalgafleyaenPlkeflerglnvslntDDPlqfgttLieeYai 292
                  pHaGE++g+++v++Al++l+aerigHG+++++dp+L+++la+++i levcP+SNv ++a+++++++Pl++++e+g+ v++n+DDP +fgttL++eYa+
   KIR66066.1 198 PHAGETTGPQTVWDALRDLGAERIGHGISAADDPELLAHLAQHRIALEVCPTSNVRTRAVASLDAHPLPRLVEAGVLVTINSDDPPMFGTTLNDEYAV 295
                  ************************************************************************************************** PP

                  HHHHHT--HHHHHHHHHHHHHCSSS-HHHHHHHCHC CS
  A_deaminase 293 aaqvfklseedlaelarNsvkqsflsadekkklldk 328
                  aa+ ++l+ + la la ++v +sfls  ek++l+++
   KIR66066.1 296 AARLLGLGPQGLAALATDAVTASFLSPGEKARLAGE 331
                  ********************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2314.82
//
Query:       KIR66067.1  [L=229]
Description: response regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-26   91.5   0.1    5.6e-26   90.4   0.1    1.6  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
      7e-24   84.2   0.1    9.3e-24   83.8   0.1    1.2  1  Response_reg  Response regulator receiver domain
  ------ inclusion threshold ------
      0.029   14.3   0.8      0.081   12.8   0.1    2.2  2  MarR_2        MarR family
      0.032   14.5   0.1      0.063   13.5   0.1    1.5  1  TrkA_N        TrkA-N domain


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.1   1.3e-29   5.6e-26       3      77 .]     151     225 ..     149     225 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 1.3e-29
                  EEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   3 eveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  +++lt+kef+lL++L+++pgrvvsr eLleevw++ + ++d+t+dvh + LR+k++++++kpr+++tvrgvG+rl
   KIR66067.1 151 PLALTRKEFDLLAYLAARPGRVVSRRELLEEVWRQPSVGEDQTIDVHLYWLRRKMGESAAKPRYLRTVRGVGFRL 225
                  789**********************************************************************97 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.1   2.1e-27   9.3e-24       1     111 [.       4     112 ..       4     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 2.1e-27
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vl+v+Dd++vr ++ + l ++g   v+++ ++ +al+ + ++++dl++lD+ +p++dG ++l+++r    ++p+ii ta+++e+ +v+ l+agadd+
    KIR66067.1   4 VLLVEDDHVVRGAMLRSLADRGH-AVHAVGTALDALRRVAAQTPDLVVLDLGLPDLDGSDALRMLRGIT-DVPIIIATARDDEQSVVRLLRAGADDY 98 
                   89*********************.*******************************************99.*************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   ++Kpf+ ++L +++
    KIR66067.1  99 MVKPFTGAHLDARI 112
                   ******99998887 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.4   6.1e+03      42      54 ..      18      30 ..      16      41 .. 0.54
   2 ?   12.8   0.1   1.8e-05     0.081       2      30 ..     153     181 ..     152     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.4
                HHHHHHTTSEEEE CS
      MarR_2 42 lkrLvaaGLverr 54
                l+ L ++G+ +  
  KIR66067.1 18 LRSLADRGHAVHA 30
                6666666666544 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.8e-05
                 T--HHHHHHHHHHHCTTTSEEEHHHHHHH CS
      MarR_2   2 gltpaqarvLaaLgrrpgrdltvgelarr 30 
                 +lt+ ++++La+L++rpgr ++ +el ++
  KIR66067.1 153 ALTRKEFDLLAYLAARPGRVVSRRELLEE 181
                 79****************97788887765 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.4e-05     0.063      24     112 ..       4      97 ..       2     102 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
                 EEEEESSHHH....HHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSH.HHHHHHHHHHHHHTSSSEEEEEESSGGG.HHHHHHHTTSE CS
      TrkA_N  24 vvvidkdeer....veelreeglevvvgdatdeevLeeagiekadaviaatgdd.eanilavllakelnpkkkiiaraqdpeh.aellkklgadv 112
                 v+++++d+ +    +++l+++g ++v++ +t  ++L++  +++ d+v+  +g    +   a+ +++ + + + iia a+d+e+ +  l ++gad 
  KIR66067.1   4 VLLVEDDHVVrgamLRSLADRG-HAVHAVGTALDALRRVAAQTPDLVVLDLGLPdLDGSDALRMLRGITDVPIIIATARDDEQsVVRLLRAGADD 97 
                 6777777744333366777666.8**************************99662344445566799999999********99656678899965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1602.47
//
Query:       KIR66068.1  [L=305]
Description: crystallin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-45  155.5  12.1    3.1e-45  155.1  12.1    1.1  1  ADP_ribosyl_GH  ADP-ribosylglycohydrolase


Domain annotation for each model (and alignments):
>> ADP_ribosyl_GH  ADP-ribosylglycohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.1  12.1   1.7e-49   3.1e-45       3     286 ..      18     284 ..      17     292 .. 0.87

  Alignments for each domain:
  == domain 1  score: 155.1 bits;  conditional E-value: 1.7e-49
                     HHHHHHHHHHHGGGTT--HHHHHHHTSS--S-----STTTTTS-TT---HHHHHHHHHHHTEET.TEE-HHHHHHHHHH.HHT....T--SS--H CS
  ADP_ribosyl_GH   3 llGaavGDAlGlpvefwsydeirrrygelgetpdktgfghfglkpgewtddtqmalllleslleaggldpedlarrflaeWleepgdteprgign 97 
                     l G+ vGDAlG ++ f +  +   ++            g+f   p++wtddt+ma+ ++  l+e g++d + la +f+ +       ++ rg+g+
      KIR66068.1  18 LHGLSVGDALGSQF-FVPGRRPA-DLA----------AGRFPPSPWQWTDDTEMACSVVAELTEVGEIDRDRLALAFAHR-C-----EPYRGYGP 94 
                     7799*******988.45444444.343..........5689***********************************8885.3.....489***** PP

                     HHHHHHHHTTTT-...-S-B......---BTTTGGG-HHHHHHTSS-HHHHHHHHHHHHHTTB--HHHHHHHHHHHHHHHHHHTT-.....-STH CS
  ADP_ribosyl_GH  98 ttrealrnlksgepppeagana...ngsagngalmRaaplgllyagdpeeaaelaeeaarlTHnhpeavagaaayaaliaaalrgk.....slee 184
                        + lr +++g+p+p a+a+a   +gs+gnga+mR+ plg+++a+++ +aa++a+++a +TH+hpe++aga+a+a ++a a r +     ++  
      KIR66068.1  95 GAVTILRLIRTGTPWPVAAASAfdgQGSCGNGAAMRVGPLGAWFADSTRQAAAQARASAEVTHAHPEGIAGAVAVAVAAALATRARldgdrPPPS 189
                     *****************************************************************************999996666545443334 PP

                     HHHHH..HHHHTTT-HHHHHHHGGGGG---HHH........HHHHH--SSBHHHHHHHHHHHHHH.-SSHHHHHHHHHTS-SSHHHHHHHHHHHH CS
  ADP_ribosyl_GH 185 aldaaeeelavapaeeelaaalrkalaladsdkdvdvdaeeavdelgsggyavealaaalyallhaaddfeeallaavnlGgDtdttgaiaGall 279
                      l a   + a+a ++ e+++ +r+a+ l  +       ++      gs + a+++++  l+a+ ++ dd+  a++a+v  GgD dtt+ai+Ga++
      KIR66068.1 190 RLLA---AVAAALDPGEVHQGVRRAAGLLGRPL----AVAVDALGNGSRVTAQDTVPFTLWAAATHLDDYPAAIRACVEAGGDVDTTAAIVGAVV 277
                     4444...48999999*************99999....3333333446778999****************************************** PP

                     HHHH-GG CS
  ADP_ribosyl_GH 280 GalyGle 286
                     +a+ G++
      KIR66068.1 278 AAHTGVG 284
                     *****86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2093.39
//
Query:       KIR66069.1  [L=670]
Description: threonine--tRNA ligase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-32  112.7   0.0    3.6e-32  111.8   0.0    1.4  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
      3e-19   69.0   0.1    5.9e-19   68.0   0.1    1.5  1  HGTP_anticodon  Anticodon binding domain
    1.1e-13   51.0   0.0    2.5e-13   49.9   0.0    1.6  1  tRNA_SAD        Threonyl and Alanyl tRNA synthetase second ad


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.0   6.1e-36   3.6e-32       8     179 .]     346     555 ..     342     555 .. 0.96

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 6.1e-36
                   SEEEEE-SSSHHHHHHHHHHHEEEBGG.SSEEEEEEEEEEBTTTS.TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.SCEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   8 dreyiLkPtneetfvelirdevlrskr.LPlklyqiqtkyRdEks.dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlglefraii 102
                   + +y+Lk++n++ +  ++r +  rs+r LP++l++++++yR+Eks   +GL+Rvr+++q+d +++++ ++++ +++ l++ +  +++++g+  + ++
    KIR66069.1 346 GADYYLKAMNCPMHNLIYRSR-GRSYReLPMRLFEFGSVYRYEKSgVVHGLTRVRGLTQDDSHSYCTREQAPGEIKHLLNFVLSLLKDFGIDDFYLE 441
                   579****************99.999777****************98899******************************************999899 PP

                   EEGTTSC.....................................BTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEE CS
                   xxxxxxx.....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 103 elmsaks.....................................adykdkkefeavsesltkgieigtiqklgtrlserlgatvldennreksvimi 162
                   ++++++                                      a+y++k  ++a +  ++++++++tiq + +++++ +g+++  +++ +++++mi
    KIR66069.1 442 LSTRDEAkldkfvgsdedwatatavlercaretgldlvpdpggaAFYGPKISVQAKDA-IGRTWQLSTIQYD-FNQPKGFGLEYQASDGTRQQPVMI 536
                   99887768999**********************************************9.*************.************************ PP

                   EEE.EE.HHHHHHHHHHHH CS
                   xxx.xx.xxxxxxxxxxxx RF
  tRNA-synt_2b 163 caa.ig.veRllsaileqn 179
                   + a +g +eR++++++e++
    KIR66069.1 537 HCAkFGsIERFIGVLTEHY 555
                   ****************986 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.1   9.8e-23   5.9e-19       1      91 [.     567     654 ..     567     656 .. 0.97

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 9.8e-23
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHH CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelvekl 91 
                     qvv ip+ e   ++++y ++    Lr++g+r+e+d  +++++kkir+a++++ipf+v+ G++++  gtv+ r rd  +++ v++de+v+ +
      KIR66069.1 567 QVVGIPIRE---DHTDYLQDFVTTLRRQGVRAEVDAGDDRMQKKIRNAQQQKIPFMVIAGDDDVAAGTVSFRYRDGSQRNGVPVDEAVAHV 654
                     89*******...9*************************************************************************99866 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   4.2e-17   2.5e-13       9      44 .]     197     239 ..     175     239 .. 0.88

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 4.2e-17
                 .EEEEESS---SBGGGC-SEEEE.......CCECCCTCEEEEE CS
    tRNA_SAD   9 isvelCgGtHvpnTgeIgafkil.......seesiakglrRIy 44 
                  + +lC+G+H+p+T+ Igafk++       ++++++++l+R+y
  KIR66069.1 197 CWSDLCRGPHLPSTRLIGAFKLMrsaaaywRGSEKNPQLQRVY 239
                 689***************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 4931.10
//
Query:       KIR66070.1  [L=181]
Description: HIT family hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-14   53.8   0.0    3.4e-14   53.4   0.0    1.1  1  HIT       HIT domain
    2.8e-07   30.5   0.0    3.7e-07   30.0   0.0    1.2  1  CwfJ_C_1  Protein similar to CwfJ C-terminus 1
    6.9e-05   23.3   0.0    9.4e-05   22.9   0.0    1.1  1  DcpS_C    Scavenger mRNA decapping enzyme C-term binding


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   5.6e-18   3.4e-14       5      95 ..      56     147 ..      53     149 .. 0.92

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 5.6e-18
                 -CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSS.S-EEEEEEC CS
         HIT   5 pstvvyeddlvlafldidpkapghlLvipkkhlselhdlteeelakllsavkkvakalqkkfknkglrvvinngahagqsva.hlHiHvipr 95 
                 +s vv + ++v+a+l+  p  pghlL++p +h+++++dl+ +e a+l + ++  +++++++ ++ g+++ +n+g  ag  +a hlH Hv+pr
  KIR66070.1  56 ESLVVARGERVFAVLNLYPYNPGHLLICPYRHVPDYTDLDLAETAELAAFTQTAMRVVRRVSNAHGFNLGMNQGGVAGAGIAeHLHQHVVPR 147
                 67799999********************************99999999999999999999999************99997744*******98 PP

>> CwfJ_C_1  Protein similar to CwfJ C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   6.2e-11   3.7e-07      10      83 ..      40     114 ..      35     146 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 6.2e-11
                 HHHH-S----S.S---SS--S-B-SSEEEE---S-SSTT-EEEEESS--SSTTSS-HHHHHHHHHHHHHHHHHHH CS
    CwfJ_C_1  10 sldsClfClsn.pklekhlivsignkvYlalpkgpLssgHvliipieHisallsldeevldeirkfrkalvkmyk 83 
                 +++ C fCl     +e+ l+v+ g++v++ l   p + gH+li p  H++  + ld  ++ e+ +f ++ +++  
  KIR66070.1  40 KPGGCPFCLAPgLPAEESLVVARGERVFAVLNLYPYNPGHLLICPYRHVPDYTDLDLAETAELAAFTQTAMRVVR 114
                 5788*****862568999************************************************998777655 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.6e-08   9.4e-05      12     100 ..      55     145 ..      44     148 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.6e-08
                 S-B-EEEE-SSEEEEE-SS-SSSEEEEEEESS---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T..-EEEEE--SCCCT--S-S--EEEE CS
      DcpS_C  12 epervvyedekfvvlkDikpkaklhllvipkrdikslrdLtkehlpllkemrekakkvieekyne..vdaeelrvgvhyqPsvyhlHlHvi 100
                 e++ vv + e++ ++  ++p ++ hll+ p+r++++ +dL+ ++   l+++ ++a  v+++  n+   +    + gv  +   +hlH Hv+
  KIR66070.1  55 EESLVVARGERVFAVLNLYPYNPGHLLICPYRHVPDYTDLDLAETAELAAFTQTAMRVVRRVSNAhgFNLGMNQGGVAGAGIAEHLHQHVV 145
                 44556667799*****************************9999999999999999999887755544444445556666699******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1449.03
//
Query:       KIR66071.1  [L=352]
Description: aldo/keto reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-54  184.1   0.0    3.7e-54  183.9   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.9   0.0   2.1e-58   3.7e-54       5     291 ..      32     324 ..      17     327 .. 0.87

  Alignments for each domain:
  == domain 1  score: 183.9 bits;  conditional E-value: 2.1e-58
                   E-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.....--SSSTTSSSS-HHHHHHHHHHHHHH CS
  Aldo_ket_red   5 GtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv.....dlrdaeiksglskeniresleeslkr 96 
                   Gt  lg+ ++++++e+++++rral+ G+++fDtA+ Yg g+ e++lG+al+    +r+e +iatK+     +   ++  ++ s++++r+++ +sl+r
    KIR66071.1  32 GTQPLGW-GAVDDAESIRAVRRALDLGVTLFDTADTYGAGHGEQVLGRALAG---RRDEAVIATKWgytfdPPTRQATGQDASPAHLRRAVVDSLRR 124
                   5555555.6*******************************************...***********9999988888899999*************** PP

                   HT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--.EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTT CS
  Aldo_ket_red  97 LgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvk.ivavqveynllreleeegllelckkkgvpliayspl 192
                   Lgtd++Dl++lH  d  +p+   +++a+++lv eG+ira+G S   v++ +++   ++ +  +avq   ++l  ++   +l +c k++++ i+ +pl
    KIR66071.1 125 LGTDRIDLYQLHLGDLPVPRAQALFAACDDLVAEGLIRAYGWSTDRVDRADAL--GQGARlGTAVQHDLSVL--RDTPDMLAVCDKYDLASINRGPL 217
                   *******************999*********************999*****99..5555524899*******..*********************** PP

                   GGGTTGTTTSS---SSSCCC-------..........TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG- CS
  Aldo_ket_red 193 ggGlltgkyqseedkedkeprkdlkrd..........ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalel 279
                   g+Glltgky   +  ++++ r     +             ++ l ++ ++++     g +laq al ++ +++ + i+ipg+++++q+e+n++a++l
    KIR66071.1 218 GMGLLTGKYAAGSTLPRDDVRGA---TatwlewfrsgRPAPEWLRRVGAVRAALTADGRTLAQGALGWLWARSDRAIPIPGCRTVAQVEENAAAMAL 311
                   **********9999886544443...244895555554455555555555555667899************************************** PP

                   .---HHHHHHHHH CS
  Aldo_ket_red 280 .klseeevaelde 291
                    +l ++ +ae+++
    KIR66071.1 312 gPLAPDHFAEVER 324
                   *********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2552.37
//
Query:       KIR66072.1  [L=707]
Description: elongation factor G [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.9e-41  138.3   0.0    1.6e-40  137.6   0.0    1.3  1  EFG_IV       Elongation factor G, domain IV
    1.3e-35  122.7   0.0    1.9e-35  122.2   0.0    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    3.6e-21   75.0   0.0    6.4e-21   74.2   0.0    1.4  1  EFG_C        Elongation factor G C-terminus
      8e-21   73.9   0.0    1.3e-20   73.2   0.0    1.4  1  EFG_II       Elongation Factor G, domain II
    6.5e-10   39.3   0.1    2.7e-09   37.3   0.1    2.2  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    5.9e-08   32.8   0.0    7.7e-07   29.2   0.0    2.3  2  MMR_HSR1     50S ribosome-binding GTPase
    7.3e-05   22.2   0.0    0.00011   21.6   0.0    1.1  1  Septin       Septin
    9.5e-05   22.8   0.1    0.00025   21.5   0.1    1.7  1  AAA_16       AAA ATPase domain
     0.0006   20.3   0.0     0.0012   19.3   0.0    1.4  1  ABC_tran     ABC transporter
     0.0014   18.8   0.2     0.0028   17.8   0.2    1.5  1  AAA_33       AAA domain
     0.0019   18.7   0.0      0.003   18.1   0.0    1.2  1  AAA_23       AAA domain
     0.0037   17.2   0.3     0.0079   16.1   0.3    1.6  1  RsgA_GTPase  RsgA GTPase
     0.0038   16.9   0.2     0.0082   15.9   0.2    1.5  1  AAA_29       P-loop containing region of AAA domain
  ------ inclusion threshold ------
       0.01   15.2   0.0      0.019   14.4   0.0    1.3  1  SRPRB        Signal recognition particle receptor beta subuni
      0.026   14.1   0.0      0.056   13.0   0.0    1.5  1  cobW         CobW/HypB/UreG, nucleotide-binding domain
      0.029   14.3   0.1      0.054   13.5   0.1    1.4  1  AAA_5        AAA domain (dynein-related subfamily)
      0.056   13.4   0.3        0.1   12.6   0.3    1.3  1  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
      0.062   13.5   0.0       0.13   12.5   0.0    1.6  1  Roc          Ras of Complex, Roc, domain of DAPkinase
      0.062   13.3   0.1        1.3    9.1   0.1    2.2  2  Dynamin_N    Dynamin family
      0.065   13.5   0.1       0.14   12.4   0.1    1.5  1  AAA_22       AAA domain
      0.086   12.7   0.1       0.16   11.9   0.1    1.4  1  MobB         Molybdopterin guanine dinucleotide synthesis pro
       0.11   12.8   1.1       0.24   11.6   1.1    1.6  1  AAA_28       AAA domain
       0.14   11.7   1.1        2.7    7.5   0.1    2.5  2  FeoB_N       Ferrous iron transport protein B
       0.14   11.9   0.1       0.24   11.1   0.1    1.3  1  IstB_IS21    IstB-like ATP binding protein
       0.19   11.4   0.1       0.38   10.5   0.1    1.4  1  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
       0.25   11.3   0.2       0.47   10.4   0.2    1.4  1  NACHT        NACHT domain
       0.25   11.5   0.0         33    4.7   0.0    2.2  2  TetR_C_17    Tetracyclin repressor-like, C-terminal domain
       0.28   10.3   0.1       0.46    9.6   0.1    1.2  1  DUF815       Protein of unknown function (DUF815)


Domain annotation for each model (and alignments):
>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6   0.0   2.6e-43   1.6e-40       2     120 ..     502     619 ..     501     620 .. 0.98

  Alignments for each domain:
  == domain 1  score: 137.6 bits;  conditional E-value: 2.6e-43
                 CCESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTTTTSSEEEEE--STCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE--TTTC CS
      EFG_IV   2 qVayrEtirkpvkereeklkkqsggdgqyakvileiePleegsgnefvdetkggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgslhevds 100
                 +V+ rEt+++p+k  +++++kqsgg+gqya + +e+ePl++g+g+efvd ++gg+vp++y+++vekG++ +l++G++ag+pv+d++vtL+dg+ h+vds
  KIR66072.1 502 RVPLRETLATPAK-GHGRHVKQSGGHGQYAVCDIEVEPLPRGAGFEFVDRVVGGAVPHQYVPSVEKGVRAQLERGLVAGHPVVDLRVTLVDGKAHSVDS 599
                 6999*********.************************************************************************************* PP

                 -HHHHHHHHCHHHHHHHHCC CS
      EFG_IV 101 seaafkpaarralkeallkA 120
                 s+aaf++a+  al++a++k+
  KIR66072.1 600 SDAAFQTAGALALRDAAEKG 619
                 ****************9986 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.2   0.0     3e-38   1.9e-35       3     193 ..      23     294 ..      22     295 .. 0.97

  Alignments for each domain:
  == domain 1  score: 122.2 bits;  conditional E-value: 3e-38
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEE CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvv 101
                 +rn++++gh  +GKtTL+++Ll++tg+i ++g++a++++v+D  ++  +++ +++ a + l    +  +inl+DtPG +dF+ e  +glr++D a++vv
  KIR66072.1  23 VRNVVLVGHSGAGKTTLVEALLAATGTIGRAGSVADGTTVCDHDPAAVRQQRSVSLACAPLV--HQGVKINLLDTPGYADFVGELRAGLRAADAALFVV 119
                 69*********************************99*************************..*********************************** PP

                 ETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH............................................... CS
    GTP_EFTU 102 daveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk............................................... 153
                 +av+G+ + t  +++ + ++g+p+ v+++ +D+++a+++e v   ++ + ++                                               
  KIR66072.1 120 SAVDGMDATTAALWEECAAVGMPRAVAVTRLDHPRADFDEAVALCQRVFGDNvlplhltmlgddgesvagllglvtrrvfdytaglpaqvrepdpehlp 218
                 *************************************************999*********************************************** PP

                 .....................................HHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 154 .....................................eeklekygekgekevpvvfgSalkgegvktllealvellp 193
                                                       ++lek++++g ++ pv++++a +g g++ ll+ lv+ +p
  KIR66072.1 219 aiaesrneliegiiaesedeslmdrylageeidtavlVADLEKAVARG-HFHPVLPVCAATGVGLDVLLDGLVSAFP 294
                 *******************99999999999999999999999999999.5*********************999887 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.0     1e-23   6.4e-21       1      83 [.     622     706 ..     622     707 .] 0.97

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 1e-23
                 EEEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE...TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--H CS
       EFG_C   1 vllEPivkveievpeeyvgkvisdlssrrGeiedmeqd..asgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpg 83 
                 vllEPi +v ++vp   vg+v++dl+ rrG+++++e+d  a+g++ ++ae+P+ el+ +a eLrslT+G+g+f  +f++Y+++p 
  KIR66072.1 622 VLLEPIDEVVVRVPGHAVGAVLGDLAGRRGRVLGTEPDpdAEGQTLVRAEVPAVELLRYAVELRSLTSGTGTFRRRFARYDPAPP 706
                 59************************************999*****************************************986 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   2.1e-23   1.3e-20       1      72 [.     427     497 ..     427     500 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 2.1e-23
      EFG_II   1 fPePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykveve 72 
                 +PeP++ +a+ ++s+aded l++ Larl++ Dptlr+er++eT++++l++mGe+H ++v++rl+   +ve++
  KIR66072.1 427 MPEPLLPVAVVARSRADEDALARNLARLVAGDPTLRLERNPETHQLVLWCMGEAHADVVLDRLRGG-GVELD 497
                 6**************************************************************864.66665 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   4.1e-12   2.7e-09       1      73 [.     337     413 ..     337     414 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 4.1e-12
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEE.....EEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskke.....ivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  G+v+l+rv+sGtl++  +v++ g     +++       +r++ ++t+ +    +v  ++aG+i+a+ +  +a ++Gdt+
   KIR66072.1 337 GRVSLVRVFSGTLRPELTVHVAGhGMA-ERGhpdhdADERVGHIYTPLGASLREVGACVAGDICAVTKSGSA-ETGDTI 413
                  89*******************885443.33369**************************************8.*****9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.2e-09   7.7e-07       1      92 [.      25     127 ..      25     149 .. 0.59
   2 ?    0.7   0.0      0.83   5.3e+02      55      86 ..     230     260 ..     202     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.2e-09
                 EEEEEESTTSSHHHHHHHHHTS...TEEESSST.TSSSSEEEEEEE...............ETTEEEEEEECGGCSSHHHHHHHHHHHHHH.HHCTSEE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge...kaivsdkp.gtTrdinegrvk...............lkgkeielvDtpGliegaseekglgkafla.leeadli 79 
                 +v++vG++ +GK+tL+ al+ +     ++++ + gtT    +   +               ++g +i+l+DtpG +       ++  +++a l+ ad++
  KIR66072.1  25 NVVLVGHSGAGKTTLVEALLAAtgtIGRAGSVAdGTT-VCDHDPAAvrqqrsvslacaplvHQGVKINLLDTPG-YA------DFVGELRAgLRAADAA 115
                 599****************975332445544442333.3333322211223333334444444577********.87......3444444413458*** PP

                 EEEEETTTTCSHH CS
    MMR_HSR1  80 llvvdaseeklkp 92 
                 l+vv+a  +++++
  KIR66072.1 116 LFVVSAV-DGMDA 127
                 ****977.33333 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.83
                 GCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  55 Gliegaseekglgkaflaleeadlillvvdas 86 
                 G+i  +se+++l +++la ee d ++lv d++
  KIR66072.1 230 GIIA-ESEDESLMDRYLAGEEIDTAVLVADLE 260
                 5443.678889******************966 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.7e-07   0.00011       6      76 ..      25     102 ..      21     107 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.7e-07
                 EEEEEEBTTSSCCCCCCTTSSSS----.........--------------S-EEEEEEEEETTCEEEEEEEE---BSSSS CS
      Septin   6 tlmvvGesglGkttlintlfetdliee.........ekleeasekkkktveikkkkvvieedgvklnltviDtpgfGdav 76 
                 ++++vG+sg Gkttl+++l++ + +           +  ++     +++ +++ + + +  +gvk+  +++Dtpg+ d+v
  KIR66072.1  25 NVVLVGHSGAGKTTLVEALLAATGTIGragsvadgtTVCDHDPAAVRQQRSVSLACAPLVHQGVKI--NLLDTPGYADFV 102
                 899****************98765544467777775444455556666667776777777777766..679*******98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   3.9e-07   0.00025      22      51 ..      21      49 ..      15     134 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.9e-07
      AAA_16 22 grpelvllsGesGvGKsslvrellralekd 51
                g+ ++v+l+G+sG GK++lv++ll a++++
  KIR66072.1 21 GGVRNVVLVGHSGAGKTTLVEALL-AATGT 49
                4449********************.55555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.9e-06    0.0012      13      51 ..      25      64 ..      22      96 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.9e-06
                EEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGG CS
                xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkp..teGeilldgkdlke 51
                 v++vG++GaGK+tL+++l+  +     +G++  dg+ + +
  KIR66072.1 25 NVVLVGHSGAGKTTLVEALLAATGTigRAGSV-ADGTTVCD 64
                689****************9877655577777.66666555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   4.4e-06    0.0028       2      24 ..      26      48 ..      26      66 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.4e-06
      AAA_33  2 vllvGlpGsGKstlaerllkklg 24
                v+lvG++G+GK+tl+e ll+++g
  KIR66072.1 26 VVLVGHSGAGKTTLVEALLAATG 48
                789****************9887 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   4.6e-06     0.003      23      45 ..      27      49 ..      24      79 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4.6e-06
      AAA_23 23 lItGpNGaGKTTildAiklaLyg 45
                +++G+ GaGKTT+++A+  a++ 
  KIR66072.1 27 VLVGHSGAGKTTLVEALLAATGT 49
                89***************999865 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   1.2e-05    0.0079     100     122 ..      24      46 ..       9     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-05
                  SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpe 122
                  + +vlvG+SG+GK+tL++all  
   KIR66072.1  24 RNVVLVGHSGAGKTTLVEALLAA 46 
                  5689***************9875 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   1.3e-05    0.0082      23      44 ..      22      45 ..       9      48 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.3e-05
      AAA_29 23 g..atlltGpsGsGKSTllDAiqa 44
                g  +++l+G+sG+GK+Tl+ A+ a
  KIR66072.1 22 GvrNVVLVGHSGAGKTTLVEALLA 45
                555799*************99875 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     3e-05     0.019       4      93 ..      24     128 ..      22     137 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3e-05
                 -EEEEE-STTSSHHHHHHHHHHS.................S---B---SS-EEETTG.....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEE CS
       SRPRB   4 pavllvGlsdsGKTslftrLttd.................svkktvtSqessaalkv..ksekgskltliDfPGheklrqklleklkaksslkglvfvv 83 
                 ++v+lvG s +GKT+l + L+                      ++ + q+ s++l +    ++g k++l+D PG   +  +l   l+a   + + +fvv
  KIR66072.1  24 RNVVLVGHSGAGKTTLVEALLAAtgtigragsvadgttvcDHDPAAVRQQRSVSLACapLVHQGVKINLLDTPGYADFVGELRAGLRA---ADAALFVV 119
                 689****************9987789999998866555553333344443333333355679********************999554...55556666 PP

                 ETTS-HHHHH CS
       SRPRB  84 DStidpkevk 93 
                  S++d  +++
  KIR66072.1 120 -SAVDGMDAT 128
                 .566655555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.7e-05     0.056       3      24 ..      26      47 ..      24      83 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.7e-05
                EEEEESTTCCHHHHHHHHHCT- CS
        cobW  3 tvltGflGsGKTtLlnhllenr 24
                +vl+G  G+GKTtL+++ll+ +
  KIR66072.1 26 VVLVGHSGAGKTTLVEALLAAT 47
                699***************9554 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   8.5e-05     0.054       1      24 [.      25      48 ..      25      62 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.5e-05
                EEEEE--SSSSHHHHHHHGGGGBS CS
       AAA_5  1 dvlLvGppGtgKselaerlaaaln 24
                +v+LvG +G gK++l+e l+aa++
  KIR66072.1 25 NVVLVGHSGAGKTTLVEALLAATG 48
                69*******************984 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   0.00016       0.1      21      45 ..      25      49 ..       4      57 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00016
                EEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE 21 vilLeGdLGaGKTtlvrglakalgv 45
                 ++L G  GaGKTtlv +l++a g 
  KIR66072.1 25 NVVLVGHSGAGKTTLVEALLAATGT 49
                499****************999875 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0    0.0002      0.13       2      24 ..      26      48 ..      25     137 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0002
                EEEESSTTSSHHHHHHCHCT-CC CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkf 24
                vvlvG sg+GKt+l++ ++  + 
  KIR66072.1 26 VVLVGHSGAGKTTLVEALLAATG 48
                89**************9987654 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1     0.002       1.3       1      20 [.      26      45 ..      26      63 .. 0.92
   2 ?    1.9   0.0      0.32   2.1e+02     101     140 ..      88     123 ..      64     137 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.002
                EEEEEBTTTTHHHHHHHHHT CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlg 20
                +++vG+  +GK+++++aLl 
  KIR66072.1 26 VVLVGHSGAGKTTLVEALLA 45
                799***************96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.32
                 -SEEEEE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS CS
   Dynamin_N 101 kgltlvDlPGldsvnkrdqelvkeyikkadiilavtsanh 140
                  +++l+D+PG+ +   +     +  ++ ad+ l+v+sa  
  KIR66072.1  88 VKINLLDTPGYADFVGEL----RAGLRAADAALFVVSAVD 123
                 4789******99855554....677778888888877755 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00022      0.14       8      28 ..      26      46 ..      21      82 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00022
      AAA_22  8 lvvtGesGtGKTtllrrlleq 28
                +v++G+sG+GKTtl++ ll  
  KIR66072.1 26 VVLVGHSGAGKTTLVEALLAA 46
                79**************99875 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00025      0.16       2      22 ..      26      46 ..      25      56 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00025
        MobB  2 lgivgksgsGKTtLleklipe 22
                + +vg+sg+GKTtL+e l+++
  KIR66072.1 26 VVLVGHSGAGKTTLVEALLAA 46
                579**************9976 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.1   0.00037      0.24       1      23 [.      25      48 ..      25      63 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00037
      AAA_28  1 kivitGgestGKTtlleaLaar.g 23
                ++v++G +++GKTtl+eaL a  g
  KIR66072.1 25 NVVLVGHSGAGKTTLVEALLAAtG 48
                59***************9975435 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0042       2.7       2      29 ..      25      52 ..      24      99 .. 0.83
   2 ?    2.3   0.1      0.17   1.1e+02      62      88 ..     233     259 ..     229     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0042
                EEEEEESTTSSHHHHHHHHHTTSEEEEE CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgakqkvgN 29
                +v+lvG   +Gkttl++al  a+ ++g 
  KIR66072.1 25 NVVLVGHSGAGKTTLVEALLAATGTIGR 52
                699****************998888874 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.17
                 SSSHHHHHHHHHHHCTSSSEEEEEEEG CS
      FeoB_N  62 ayseeekvardflleeepdvvvnvvda 88 
                 a se+e++  ++l+ ee+d+ v v+d 
  KIR66072.1 233 AESEDESLMDRYLAGEEIDTAVLVADL 259
                 579*********************995 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00038      0.24      48      69 ..      24      45 ..      21      93 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00038
   IstB_IS21 48 enivllGpsGvGKshlaialgv 69
                 n+vl+G+sG+GK+ l  al  
  KIR66072.1 24 RNVVLVGHSGAGKTTLVEALLA 45
                59***************99854 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00059      0.38       2      21 ..      24      43 ..      23      49 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00059
   PduV-EutP  2 kkilliGkvgsGKttLtqal 21
                ++++l+G++g+GKttL +al
  KIR66072.1 24 RNVVLVGHSGAGKTTLVEAL 43
                689*************9998 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00074      0.47       2      22 ..      25      45 ..      24      53 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00074
                CEEEEC-TTTCHHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqklal 22
                 v+l G +G GKTtL++ l  
  KIR66072.1 25 NVVLVGHSGAGKTTLVEALLA 45
                699*************98865 PP

>> TetR_C_17  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.051        33      63      97 ..     103     137 ..     100     140 .. 0.87
   2 ?    4.4   0.0     0.063        40      50      85 ..     253     289 ..     218     294 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.051
                 TS---SS-HHHHHHHHHHHHHHHHHHHHHS-HHHH CS
   TetR_C_17  63 gEfkPqlplesiakylisfldGliletlalgeekt 97 
                 gE++  l +++ a +++s +dG+   t+al ee +
  KIR66072.1 103 GELRAGLRAADAALFVVSAVDGMDATTAALWEECA 137
                 78888899999************999999887765 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.063
                 HHHHHHHHHHHHTTS---SS-HHHHHHHHHHH.HHHH CS
   TetR_C_17  50 ealkellqeGvergEfkPqlplesiakylisf.ldGl 85 
                 ++l++ l++ v+rg f+P+lp+ + + + + + ldGl
  KIR66072.1 253 AVLVADLEKAVARGHFHPVLPVCAATGVGLDVlLDGL 289
                 45666689*************9888776555325776 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00072      0.46      54      77 ..      24      47 ..      18      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00072
      DUF815 54 nnvLLwGarGtGKSslvkallney 77
                +nv+L+G+ G+GK +lv all+++
  KIR66072.1 24 RNVVLVGHSGAGKTTLVEALLAAT 47
                69******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 4858.08
//
Query:       KIR66073.1  [L=210]
Description: CDP-alcohol phosphatidyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-11   42.9   2.7    6.1e-11   42.9   2.7    2.3  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   2.7   3.4e-15   6.1e-11       1      66 []      29      94 ..      29      94 .. 0.88
   2 ?    0.6   0.2     0.054   9.7e+02      21      21 ..     131     131 ..      99     190 .. 0.46

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 3.4e-15
                     S-HHHHHHHHHHHHHHHHHGGGS-H..HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf  1 nlPnaiTllrlllsvlailllltyyplvlailllliasltDalDGklARrlnqvstlGkllDslaD 66
                     ++Pna+T+++ l +++ +l l +  +lv+++l++ + +ltD+lDG +AR  + ++++G++lDs +D
       KIR66073.1 29 VTPNAVTVTGTLGVLVGALGLGARGHLVAGALVVTFFALTDLLDGTMARMSGGSTRFGAFLDSSMD 94
                     58**********9888888777777788888888899**************99777*******988 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.054
                      G CS
  CDP-OH_P_transf  21 l 21 
                      +
       KIR66073.1 131 V 131
                      1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1501.88
//
Query:       KIR66074.1  [L=315]
Description: lipid A biosynthesis lauroyl acyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-54  184.2   0.0    3.7e-54  183.9   0.0    1.0  1  Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransfera


Domain annotation for each model (and alignments):
>> Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.9   0.0   2.1e-58   3.7e-54      19     294 ..       8     293 ..       3     294 .. 0.94

  Alignments for each domain:
  == domain 1  score: 183.9 bits;  conditional E-value: 2.1e-58
  Lip_A_acyltrans  19 giavllllallPesvlrkilkglgrlaakflkrrrkiarkNLalvfp.ekseaerekiidksfesvgraivetirvafisdeeiakrve..vig 109
                      ++a+++l ++lP+sv+  ++ +++  a + + ++ +++r+NL +v + e +eae + +++  ++s++r+++e++r++  s e+i   +     g
       KIR66074.1   8 YVAGWRLARALPRSVVAVAFRAGADRAHRAGGGGTARLRANLRRVVGpELPEAELDDLVRRGLRSYARYWMEAFRLPSLSREQILTGFRlaPDG 101
                      799*******************************************99************************************998875589* PP

  Lip_A_acyltrans 110 lehikealaeeegvilllpHfanwelaglvlakqypglavvaenkknpllnqliislRerfggkllprkna....ikelikalrkgevvvllpD 199
                       +++ +  a+++g++++lpH +nw++ag + a  +  +++vae+ k++ ++q++   R+ +g+++lp  ++    +  l+ +lr+g vv ll+D
       KIR66074.1 102 VDRLAADVAAGRGAVVALPHAGNWDAAGAWVAATGWPITTVAERLKPEAVYQRFLAFRRGLGMEILPTHGGdrpaFDVLVDRLRSGAVVPLLAD 195
                      ********************************************************************************************** PP

  Lip_A_acyltrans 200 qdlgrkdsvfvpfFgepaatttspaklalktkaavipvaiirkkdgskytvsvhPaldlsste......DveqiaqalneilekeitaaPeqyl 287
                      +dl ++ +++v+fFg  ++++++pa+la++t+a++    +++++d     +s+  +l l + +       v  ++q +++ l   i+++Pe+++
       KIR66074.1 196 RDLSAR-GIEVDFFGARTRMPAGPALLAIRTGAPLYVASMWYEPDA--ACASIAGPLPLPDADsgpldqRVRVLTQHIADGLSAGIARHPEDWH 286
                      ******.***************************************..55666666666655555664668899******************** PP

  Lip_A_acyltrans 288 wlhrrfk 294
                      +l+r ++
       KIR66074.1 287 MLQRMWL 293
                      *****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2201.21
//
Query:       KIR66075.1  [L=386]
Description: GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-26   91.9   0.2    1.1e-24   87.4   0.0    2.4  2  Glyco_trans_1_4  Glycosyl transferases group 1
    1.2e-25   90.5   1.1    1.9e-25   89.8   1.1    1.3  1  Glyco_transf_4   Glycosyltransferase Family 4
    3.8e-19   68.8   0.0    6.1e-19   68.2   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    1.6e-16   61.2   6.5    1.6e-16   61.2   6.5    2.2  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    6.3e-08   32.9   0.0    1.3e-07   31.9   0.0    1.5  1  Glyco_trans_1_2  Glycosyl transferases group 1
    1.3e-05   25.3   0.0    2.2e-05   24.5   0.0    1.3  1  Glyco_trans_4_2  Glycosyl transferase 4-like
  ------ inclusion threshold ------
      0.016   15.2   0.6      0.061   13.4   0.6    2.0  1  EutK_C           Ethanolamine utilization protein EutK C-term
       0.13   12.6   0.0        1.3    9.3   0.2    2.4  2  Nif11            Nif11 domain
       0.16   11.6   0.1       0.71    9.5   0.0    1.8  2  Glyco_transf_5   Starch synthase catalytic domain


Domain annotation for each model (and alignments):
>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2      0.13   2.6e+02      62     104 ..      73     120 ..      64     154 .. 0.76
   2 !   87.4   0.0   5.3e-28   1.1e-24       3     134 .]     195     335 ..     193     335 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.13
                      --..THHHHHHHH-SEEEE--.-..--SHHHHHHHHTT-EEEE-TGGG CS
  Glyco_trans_1_4  62 fv..edlaellaaadvfvaPs.e..gfglkllEamaaglpvVatdvgg 104
                       v  + +++++a+    v+   e  +++l++l  ++a+ pvVat   +
       KIR66075.1  73 PVssARVRRWIARGEFDVLHVhEplTLSLSMLAVLSAKGPVVATFHTA 120
                      55444588888888888888876557999**************96544 PP

  == domain 2  score: 87.4 bits;  conditional E-value: 5.3e-28
                      EEEEES---GG.GTHHHHHHHHHHHH.H.H.EEEEEES---..HHHHHHHT.T-T.TEEEE---..THHHHHHHH-SEEEE--...---SHHHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkk.d.vrlvivGdgprpeeleelaa.gleerveftGfv..edlaellaaadvfvaPs...egfglkll 88 
                      +++f+Gr++e +kg+ +l +a+ +l+   + +rl+++G g +p++l ++    l++rv+f+G v  +d+a++l++++++vaP+   e+fg+ l 
       KIR66075.1 195 TLGFLGRFTEARKGFPILRDAFVELAGTrPgLRLLVAGPG-DPDDLFDRFPaPLRDRVTFLGLVseADKARMLRSVHLYVAPNtggESFGMILT 287
                      689*****8888**********888855358*******88.55678878855999*********9888***************9999******* PP

                      HHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  89 EamaaglpvVatdvggiaevv..gengllvppgdpealaeailrLled 134
                      Ea+aag+ vVa+d+ ++++v+  g++g l+p gd++al ea+++Ll+d
       KIR66075.1 288 EALAAGTTVVASDLDAFRRVLdgGRAGQLFPTGDAAALREALAALLDD 335
                      *******************99*99**********************97 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   1.1   9.8e-29   1.9e-25       1     168 [.      14     172 ..      14     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 9.8e-29
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeev..elvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrr 93 
                     +GGv++hv +La+aL  +GheV+v++p+d++ +      + +++vp ++  + +r  + + ++ r+rr++ r+++Dv+H+h p +l +++la + 
      KIR66075.1  14 PGGVQNHVMDLAEALLGLGHEVSVLAPADEDSPLPPYvvPAGRAVPLPYNGSVARIAFGPVSSARVRRWIARGEFDVLHVHEPLTLSLSMLAVLS 108
                     59***********************99888776666445777777777777778888899999*******************************9 PP

  Glyco_transf_4  94 rlgiplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDl 168
                       + p+V+t+H+ +        +++  ++++ +++ +l r  + iavS  +++  +e  +++    + ipnGv +
      KIR66075.1 109 -AKGPVVATFHTAM-------TRSRVLAAAQGVLQIVLERITARIAVSALARKVQVE--HMD-GGAVEIPNGVTV 172
                     .999**********.......688888999999999*****************9999..555.567899***976 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   3.1e-22   6.1e-19      18     165 ..     196     342 ..     190     348 .. 0.92

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 3.1e-22
                      EEEESS-TTT.TTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESS.BSS-HHH CS
  Glycos_transf_1  18 ilsvgrleke.KgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsis.EgfGivl 109
                      + ++gr+++  Kg+  l +af +l  + +p ++l++aG   + + l ++   + l+d+v+flg vs+ d+  +l++ +++v+p +  E+fG+ l
       KIR66075.1 196 LGFLGRFTEArKGFPILRDAFVELAGT-RPGLRLLVAG-PGDPDDLFDR-FPAPLRDRVTFLGLVSEADKARMLRSVHLYVAPNTGgESFGMIL 286
                      77999998877*************987.**********.7777888888.578999***************************777******** PP

                      HHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHH CS
  Glycos_transf_1 110 lEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerl 165
                      +EA+aag+ v+as+   ++ v+  g  G l+++++a+al ea++ ll+d+ +r++l
       KIR66075.1 287 TEALAAGTTVVASDLDAFRRVLDGGRAGQLFPTGDAAALREALAALLDDPARRAEL 342
                      **************************************************888776 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   6.5   7.9e-20   1.6e-16       1     139 [.      15     150 ..      15     169 .. 0.75
   2 ?   -0.7   1.2      0.85   1.7e+03      46      67 ..     309     332 ..     218     358 .. 0.60

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 7.9e-20
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgape.leedgvrvhrlpvprrpspladla....alralrrllrqrrerpdvvhahsptaglaar 89 
                      gG++ +v +la+aL  +GheV vl+pa+  ++ + ++ +  r   +p+p+++s +a+ a    +++++rr++  +r  +dv+h+h+p++ ++ +
       KIR66075.1  15 GGVQNHVMDLAEALLGLGHEVSVLAPADEDSPLPpYVVPAGRA--VPLPYNGS-VARIAfgpvSSARVRRWI--ARGEFDVLHVHEPLTLSLSM 103
                      8************************987766443244444443..68888874.55544223377*******..*************9999999 PP

  Glyco_trans_4_4  90 larrrrgiplvvtlhglllrrgsgavrrlyralerrllrradavlvvsea 139
                      la + ++ p+v t+h++ +r++   v ++++ + + +l r  a ++vs+ 
       KIR66075.1 104 LAVLSAKGPVVATFHTAMTRSR---VLAAAQGVLQIVLERITARIAVSAL 150
                      999999**********887755...3334444444555555555555554 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.85
  Glyco_trans_4_4  46 pvprrps..pladlaalralrrll 67 
                      + +r+++  p++d+aalr + ++l
       KIR66075.1 309 DGGRAGQlfPTGDAAALREALAAL 332
                      222222234444455554333333 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   6.3e-11   1.3e-07       8      91 ..     278     363 ..     258     364 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 6.3e-11
  Glyco_trans_1_2   8 s.espnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydhraeqll 91 
                        es+ + l Ea+a+G++++++d +++++ ++ g+ + lf   d + l e++++ll++p++r+++ + + +   a++++   a+++l
       KIR66075.1 278 GgESFGMILTEALAAGTTVVASDLDAFRRVLDGGRAGQLFPtgDAAALREALAALLDDPARRAELTACGDQV-VAHFDWPVVARRVL 363
                      35789999********************************************************99988776.78999999888876 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.1e-08   2.2e-05      12     118 ..      20     128 ..      12     152 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.1e-08
  Glyco_trans_4_2  12 htlrlakeLakrgyeVhvitp.kkga.kdeleaegihvhrlkvd...rkgpleylkafklkklikkikPDvvhahyakpygllgslaarlsgvi 100
                      h++ la++L   g+eV+v+ p ++++     + +  +  +l+ +    +++++ ++ +++++ i++ ++Dv+h+h++    l  s++a ls + 
       KIR66075.1  20 HVMDLAEALLGLGHEVSVLAPaDEDSpLPPYVVPAGRAVPLPYNgsvARIAFGPVSSARVRRWIARGEFDVLHVHEPLT--LSLSMLAVLSAKG 111
                      9999*****************655555344445566677777674444448888999*******************655..666888999999* PP

  Glyco_trans_4_2 101 pvvlsvwGldvlkfpkks 118
                      pvv++++ + ++++   +
       KIR66075.1 112 PVVATFH-TAMTRSRVLA 128
                      *******.7776665554 PP

>> EutK_C  Ethanolamine utilization protein EutK C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.6   3.1e-05     0.061       4      39 ..     326     364 ..     323     369 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.1e-05
      EutK_C   4 aeaLLaLLa..svrqGmta.G.evaahfaWPLekarqvLe 39 
                  eaL aLL   + r  +ta G  v ahf WP+  ar+vLe
  KIR66075.1 326 REALAALLDdpARRAELTAcGdQVVAHFDWPV-VARRVLE 364
                 68999999632568889984347********9.6999999 PP

>> Nif11  Nif11 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.62   1.2e+03       8      31 ..     215     238 ..     214     241 .. 0.86
   2 ?    9.3   0.2   0.00067       1.3       6      33 ..     325     350 ..     321     352 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.62
       Nif11   8 aFlekvkqDpalreqlkacsdhee 31 
                 aF+e + + p lr  ++   d+++
  KIR66075.1 215 AFVELAGTRPGLRLLVAGPGDPDD 238
                 899999999999999999999887 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00067
       Nif11   6 lkaFlekvkqDpalreqlkacsdheevv 33 
                 l++ l+++  Dpa+r++l+ac d  +vv
  KIR66075.1 325 LREALAALLDDPARRAELTACGD--QVV 350
                 5556888889***********77..555 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00035      0.71      16      42 ..      15      41 ..       7      48 .. 0.91
   2 ?   -0.6   0.0      0.45     9e+02     128     171 ..      85     119 ..      61     171 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00035
  Glyco_transf_5 16 GGLadvvgaLpkaLaklghdvrvilPr 42
                    GG+  +v +L++aL  lgh+v+v+ P+
      KIR66075.1 15 GGVQNHVMDLAEALLGLGHEVSVLAPA 41
                    9999********************996 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.45
  Glyco_transf_5 128 klgwkpdvihahDWhtalvpallkelykerglfkkiktvftiHN 171
                     +   ++dv+h+h   t  + +l+  l +      k ++v t H 
      KIR66075.1  85 R--GEFDVLHVHEPLTLSLSMLAV-LSA------KGPVVATFHT 119
                     2..259999999988877744443.332......2566666663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3085.58
//
Query:       KIR66076.1  [L=163]
Description: hypothetical protein TK50_12605 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.021   14.7   1.0      0.032   14.2   1.0    1.3  1  Wzy_C_2   Virulence factor membrane-bound polymerase, C-termi
      0.039   14.2   1.4      0.039   14.2   1.4    2.6  2  Tad       Putative Flp pilus-assembly TadE/G-like


Domain annotation for each model (and alignments):
>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.0   3.5e-06     0.032      27     103 ..       9      88 ..       3     116 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.5e-06
     Wzy_C_2  27 laaflvl.glldsksrsrrlrlrpklvlrvvalvlallglalllsilhdyq..rleqlyltsepneaalrevtnpkvwkd 103
                 l+++lv  +l+++++r +rlr+r ++++r++ + l+  ++a+ + +++ y      +++++ + +++ +++ +n+++++ 
  KIR66076.1   9 LVVGLVAaYLIWTAGRVERLRVRAESAARALDAHLLRRAAAAAVLAERRYGveLYAAARIALDAEPQEREAAENDLTRQL 88 
                 678888889****************************************9976677788888888888888876665553 PP

>> Tad  Putative Flp pilus-assembly TadE/G-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.4   4.4e-06     0.039       7      38 ..       5      36 ..       3      36 .. 0.93
   2 ?    1.7   2.5     0.036   3.2e+02      34      44 ..      44      54 ..      38      60 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.4e-06
         Tad  7 falallpllllvglavDvgravlartrlQnAA 38
                + + l++ l+++ l + +gr+ + r r+ +AA
  KIR66076.1  5 VGASLVVGLVAAYLIWTAGRVERLRVRAESAA 36
                6788999999*********************8 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.036
         Tad 34 lQnAADaAALA 44
                l +AA aA+LA
  KIR66076.1 44 LRRAAAAAVLA 54
                889*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 1485.12
//
Query:       KIR66077.1  [L=305]
Description: pyridoxal biosynthesis lyase PdxS [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.4e-106  354.9   3.3   1.8e-106  354.5   3.3    1.1  1  SOR_SNZ       SOR/SNZ family
    7.3e-10   38.6   6.4    7.3e-07   28.7   0.4    2.3  2  ThiG          Thiazole biosynthesis protein ThiG
    2.7e-05   23.4   0.1     0.0091   15.1   0.0    2.3  2  Dus           Dihydrouridine synthase (Dus)
    0.00016   21.0   2.2     0.0065   15.7   0.1    2.9  3  NanE          Putative N-acetylmannosamine-6-phosphate epimer
    0.00031   20.3   0.2     0.0038   16.7   0.0    2.5  3  His_biosynth  Histidine biosynthesis protein
     0.0017   17.9   7.0      0.003   17.0   1.1    2.3  2  NMO           Nitronate monooxygenase
     0.0021   17.3   0.0      0.045   12.9   0.0    2.2  2  IGPS          Indole-3-glycerol phosphate synthase
  ------ inclusion threshold ------
      0.018   14.3   0.1      0.039   13.2   0.1    1.5  1  DHO_dh        Dihydroorotate dehydrogenase
       0.02   14.0   0.1      0.035   13.2   0.1    1.3  1  Glu_synthase  Conserved region in glutamate synthase
      0.059   12.4   0.1      0.059   12.4   0.1    1.9  2  FMN_dh        FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> SOR_SNZ  SOR/SNZ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.5   3.3    1e-109  1.8e-106       2     207 .]      18     223 ..      17     223 .. 0.99

  Alignments for each domain:
  == domain 1  score: 354.5 bits;  conditional E-value: 1e-109
                 THHHHHHHHTTTSSEEEEESSHHHHHHHHHHT-SEEEE-SS-HHHHHHH-S------HHHHHHHHHH-SS-EEEEEETT-HHHHHHHHHTT-SEEEEET CS
     SOR_SNZ   2 lkvkaglaemlkgGvimdvvnaeqakiaeeaGavavmalervpadirkeggvarmsdpklikeikeavsipvmakvriGhfveaqilealgvdyiDese 100
                 ++vk+g+aemlkgGvimdvv++eqakiae+aGavavmalervpadir++ggv+rmsdp++i+ i++avsipvmak+riGhfveaq+l+algvdy+Dese
  KIR66077.1  18 ARVKRGMAEMLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPADIRAQGGVSRMSDPDMIDGIIDAVSIPVMAKARIGHFVEAQVLQALGVDYVDESE 116
                 689************************************************************************************************ PP

                 TS--S-SS----GGG-SS-EEEEESSHHHHHHHHHHT-SEEEEES-TTS--THHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHGGGHHHHHHHHHTT CS
     SOR_SNZ 101 vltpadeeahidkkkfkvpfvcGarnlgealrriaeGaamirtkGeagtGdvveavrhvrkikeeirklkslseeelvalakelkaplelvkevaelgr 199
                 vltpad ++hidk++f+vpfvcGa+nlgealrri+eGaamir+kGeagtGdv++a  h+r+i++ei++l+sl  +el+ +akel+ap+elv+evae+g+
  KIR66077.1 117 VLTPADYANHIDKWAFTVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSNATMHMRRIRQEIARLSSLPADELFVAAKELQAPYELVREVAETGK 215
                 *************************************************************************************************** PP

                 S-S---T. CS
     SOR_SNZ 200 lpvvnfaa 207
                 lpvv f+a
  KIR66077.1 216 LPVVLFTA 223
                 ******97 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   1.1   2.8e-05     0.051     136     201 ..      41     112 ..      14     148 .. 0.85
   2 !   28.7   0.4   4.1e-10   7.3e-07     166     224 ..     206     266 ..     164     270 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.8e-05
                 HHHHHHHTT-SEBEEB...SSSTTS----...S-HHHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEE CS
        ThiG 136 larrleevGcaavmPl...aapiGsglGl...lnkealkiiieeakvPvivDAGigspsdaaqamelGadav 201
                  a+  e++G+ avm l    a i +  G+   +++ ++  ii+ +++Pv+  A ig+  +a     lG+d v
  KIR66077.1  41 QAKIAEDAGAVAVMALervPADIRAQGGVsrmSDPDMIDGIIDAVSIPVMAKARIGHFVEAQVLQALGVDYV 112
                 577789********97333588988877621156889**********************9999999999976 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 4.1e-10
                 HHHHHHHH-SS-BEE..ES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHH CS
        ThiG 166 alkiiieeakvPviv..DAGigspsdaaqamelGadavllntavaeakdpvamArafklav 224
                  ++ + e+ k+Pv++    Gi +p daa+ m+lGa++v++ + + ++ +p++ A+a+ +a+
  KIR66077.1 206 LVREVAETGKLPVVLftAGGIATPADAAMMMQLGAEGVFVGSGIFKSGNPAQRAAAIVKAT 266
                 3466677779**99743458************************************99986 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0025       4.5      96     195 ..      64      98 ..      36     112 .. 0.50
   2 !   15.1   0.0   5.1e-06    0.0091     169     238 ..     201     272 ..     168     286 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0025
                 TEEEGGGGGGSHHHHHHHHHHHHCCSSS-EEEEEESESSTTTC.HHHHHHHHHHCT-SEEEEESSECCCTT-CG--CHHHHHHHHH-SS-EEEESS--S CS
         Dus  96 rggaGaaLlrkpdlvaqivkavvkaveiPvtvkirigiddeeenalelakiveaaGaqaltvHgRtraqnyegtadweaIkevkqavsipviaNGdIkd 194
                 r ++G +                                                                    d + I  + +avsipv+a   I +
  KIR66077.1  64 RAQGGVSR-----------------------------------------------------------------MSDPDMIDGIIDAVSIPVMAKARIGH 97 
                 33344444.................................................................44555555555555555555554444 PP

                 H CS
         Dus 195 a 195
                 +
  KIR66077.1  98 F 98 
                 4 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 5.1e-06
                 G--CHHHHHHHHH-S..S-EEEESS--SHHHHHHHHHHH--SEEEESCHHC..CSTTHHHHHHHHHHSC----- CS
         Dus 169 tadweaIkevkqavs..ipviaNGdIkdaedaqaileetGadgvmigrgal..gnPwlfaestavktgeaepap 238
                 +a +e ++ev +  +  ++++  G+I ++ da  +++  Ga+gv +g g    gnP+  a  + vk   ++ +p
  KIR66077.1 201 QAPYELVREVAETGKlpVVLFTAGGIATPADAAMMMQL-GAEGVFVGSGIFksGNPAQRA-AAIVKATTFHDDP 272
                 7889999999987664488999**********998888.*********986125666555.4445555555544 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.065   1.2e+02     154     171 ..      37      54 ..      20      59 .. 0.84
   2 ?    2.9   0.3      0.03        54     159     171 ..      42      54 ..      32     130 .. 0.52
   3 !   15.7   0.1   3.6e-06    0.0065     132     184 ..     202     257 ..     194     265 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.065
                 -SHHHHHHHHTT--SEEE CS
        NanE 154 ntPekakkaieiGvdavv 171
                  tPe+ak a + G++av+
  KIR66077.1  37 VTPEQAKIAEDAGAVAVM 54 
                 599999999999999985 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.03
                 HHHHHTT--SEEE CS
        NanE 159 akkaieiGvdavv 171
                 ak a + G++av+
  KIR66077.1  42 AKIAEDAGAVAVM 54 
                 4444444444432 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 3.6e-06
                 --HHHHHHHHHTT--...EEEES---SHHHHHHHHTT--SEEEE-HHHH-HHHHHH CS
        NanE 132 pDfalvkalseaglk...viaeGrintPekakkaieiGvdavvvGsaitrleeiak 184
                   ++lv+++ e+g     + + G i tP+ a+ ++++G++ v vGs i +  + a+
  KIR66077.1 202 APYELVREVAETGKLpvvLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGNPAQ 257
                 5689999999987433336789************************9987665555 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.24   4.4e+02      60      92 ..      73     105 ..      45     118 .. 0.56
   2 !   16.7   0.0   2.1e-06    0.0038      57     117 ..     199     261 ..     161     268 .. 0.81
   3 ?   -0.2   0.0      0.32   5.7e+02      97     141 ..     260     305 .]     256     305 .] 0.71

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.24
                   HHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHH CS
  His_biosynth  60 anldlveeiaeevfipvqvGGGIrsledveell 92 
                    + d++  i+++v+ipv+    I ++ +++ l 
    KIR66077.1  73 SDPDMIDGIIDAVSIPVMAKARIGHFVEAQVLQ 105
                   233444444444444444444444444444444 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.1e-06
                   THHHHHHHHHHHHHH-SSEE..EEESSSSSHHHHHHHHHCT-SEEEESHHHHH-THHHHHHHH CS
  His_biosynth  57 greanldlveeiaeevfipv..qvGGGIrsledveelleagadkviigtaavknpelikelae 117
                   + +a ++lv+e+ae+ ++pv     GGI +  d++ ++++ga+ v +g+  +k+ +  +++a 
    KIR66077.1 199 ELQAPYELVREVAETGKLPVvlFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGNPAQRAAA 261
                   556678999999999997762256999******************999999988776666665 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.32
                   SEEEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEE..C.EEEEETTT CS
  His_biosynth  97 dkviigtaavknpelikelaekfgsqkivvaiDarr..g.ykvaikgw 141
                     ++ +t   ++p+++ ++++  g+   +v+i + +  + +++a +gw
    KIR66077.1 260 AAIVKATTFHDDPDVLAKVSRGLGE--AMVGINVDEipQpHRLAERGW 305
                   56777899999**********9999..666666555332456666665 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.5     0.015        27     181     198 ..      74      91 ..      28     107 .. 0.77
   2 !   17.0   1.1   1.6e-06     0.003     182     226 ..     204     250 ..     195     287 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.015
         NMO 181 lfaLvpqvldavdiPviA 198
                    +++ + dav+iPv+A
  KIR66077.1  74 DPDMIDGIIDAVSIPVMA 91 
                 5578999**********9 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.6e-06
         NMO 182 faLvpqvldavdiPvi..AaGGiidrrgvaaaLalGAsgvqigtrfL 226
                  +Lv +v++  ++Pv+   aGGi +  + a ++ lGA+gv +g+   
  KIR66077.1 204 YELVREVAETGKLPVVlfTAGGIATPADAAMMMQLGAEGVFVGSGIF 250
                 5788999999999997668************************9754 PP

>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.046        83      61      86 ..      29      54 ..      17     107 .. 0.90
   2 !   12.9   0.0   2.5e-05     0.045     199     250 ..     207     258 ..     197     262 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.046
                TEESBSS--HHHHHHHHTTT.-SEEE CS
        IGPS 61 kgliredfdpaeiAkkyeeagAsaiS 86
                kg + +d++ +e+Ak  e+agA a+ 
  KIR66077.1 29 KGGVIMDVVTPEQAKIAEDAGAVAVM 54
                7889999***************9985 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.5e-05
                 HHHHCHCC-TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC-TTHHHH CS
        IGPS 199 teeLaklvpkdvllvaeSGiktredveklkeegvnafLvGeslmrqedveka 250
                 ++e+a++ +  v+l +  Gi+t++d+ ++ + g++++ vG+ + ++ + ++ 
  KIR66077.1 207 VREVAETGKLPVVLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGNPAQR 258
                 455666666679999****************************999888776 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   2.2e-05     0.039     232     281 ..     205     254 ..     199     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGT CS
      DHO_dh 232 kvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegp 281
                 +++re++++ k  + +   GGi +  Da  +++ GA  v v++++ ++g 
  KIR66077.1 205 ELVREVAETGKLPVVLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGN 254
                 68999999999889999***************************977775 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     2e-05     0.035     274     305 ..     217     248 ..     205     254 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2e-05
                   G-EEEEESS--SHHHHHHHHHHT-SEEE-SHH CS
  Glu_synthase 274 rvsliadGglktgadvvkalalGAdavgigta 305
                    v+l+++Gg+ t+ad ++ + lGA+ v +g++
    KIR66077.1 217 PVVLFTAGGIATPADAAMMMQLGAEGVFVGSG 248
                   589************************99986 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3       0.5     9e+02     223     242 ..      35      54 ..      23      55 .. 0.83
   2 ?   12.4   0.1   3.3e-05     0.059     256     301 ..     202     247 ..     174     264 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.5
                 EE-SHHHHHHHHHTTESEEE CS
      FMN_dh 223 GvltaedakraveaGvdgiv 242
                  v+t+e ak a +aG+ +++
  KIR66077.1  35 DVVTPEQAKIAEDAGAVAVM 54 
                 589************99885 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 3.3e-05
                 -HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESH CS
      FMN_dh 256 atidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGR 301
                 a+ +   e++e  +  + ++  gGi + +D++  + lGA++v++G 
  KIR66077.1 202 APYELVREVAETGKLPVVLFTAGGIATPADAAMMMQLGAEGVFVGS 247
                 5566666666666667888889999999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2176.02
//
Query:       KIR66078.1  [L=201]
Description: glutamine amidotransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-55  188.4   0.0    1.3e-55  188.2   0.0    1.0  1  SNO            SNO glutamine amidotransferase family
    2.2e-09   37.2   0.0    5.4e-09   35.9   0.0    1.7  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
     0.0016   18.1   0.0     0.0025   17.5   0.0    1.2  1  Peptidase_S51  Peptidase family S51
     0.0051   16.6   0.0      0.014   15.2   0.0    1.7  1  GATase         Glutamine amidotransferase class-I
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.25   11.1   0.0    1.6  1  DJ-1_PfpI      DJ-1/PfpI family


Domain annotation for each model (and alignments):
>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.2   0.0   3.6e-59   1.3e-55       1     185 [.       9     197 ..       9     200 .. 0.93

  Alignments for each domain:
  == domain 1  score: 188.2 bits;  conditional E-value: 3.6e-59
                 EESSSSSHHHHHHHHHHTTSEEEEE-SGGGGCC-SEEEE-SS-HHHHHHHHHHTT-HHHHHHHHHTT.--EEEETHHHHHHCCEETTB..SS-SS--CC CS
         SNO   1 vlalqGaveehveaikkclaenktvkrkedlaevdaliiPGGestamskliertglyedllefvknsekvvlGtCaGlillskelene..lvktlellk 97 
                 vlalqG+v+ehv a+  ++a ++ v+r+++l+ vd+l+iPGGest++skl++ +++ e++ + ++ +  +v+G CaG+i+l+ e+     + + +  ++
  KIR66078.1   9 VLALQGDVREHVAALTGAGAHARPVRRPQELDAVDGLVIPGGESTTISKLADIFDMREPIDKRIAAG-MPVYGSCAGMIMLATEVLDGrpDQRGFAGIE 106
                 8****************************************************************99.9**************98776578888999** PP

                 EEEETTTT-SCCGEEEEEEEETTTC.SEEEEEESS--EEEEE-.TTTCEEEEECT.....TEEEEEEETTEEEESS-GGGSTTHCHHHHHHHHH CS
         SNO  98 vkvkrnafGrqvdsfekeldfknli.ekftavfiraPvieeilddeavkvlyeld.....geivvakqkkilatsfhPelaeddirvhdyfvee 185
                 ++v+rnafGrqvdsfe+ +++ +++ e+f avfiraP +e+++    v+vl e       g+iv+++q+++latsfhPel+ d  r+h yfv+ 
  KIR66078.1 107 MTVRRNAFGRQVDSFEAPVTIAGVEgEPFHAVFIRAPWVERVG--AGVDVLGEVTegpaaGRIVAVRQGNLLATSFHPELTGD-LRLHRYFVDL 197
                 ************************99*****************..5666666655555888********************99.*******975 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.5e-12   5.4e-09      30      97 ..      33      97 ..      20     187 .. 0.75

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.5e-12
    GATase_3 30 vplkdeslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeeiedpeg 97
                v+ + ++l++ +d +++pGg++t+ + +l++  +++e i + ++ag+pv+g C+G++mL +e+ d   
  KIR66078.1 33 VR-RPQELDA-VDGLVIPGGESTTIS-KLADIFDMREPIDKRIAAGMPVYGSCAGMIMLATEVLDGRP 97
                55.6788966.**********99865.5556669****************************998543 PP

>> Peptidase_S51  Peptidase family S51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     7e-07    0.0025      79     132 ..      38      91 ..      17     100 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7e-07
                    HHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTT-EEEEETHHHHTTSSB CS
  Peptidase_S51  79 klleadviyvgGGntfrLlkllketgldkllreavqqglvyiGvSAGaivages 132
                     l + d++++ GG+   + kl    ++ +++ +++++g+++ G+ AG i+ +++
     KIR66078.1  38 ELDAVDGLVIPGGESTTISKLADIFDMREPIDKRIAAGMPVYGSCAGMIMLATE 91 
                    4777*******************************************9987765 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.9e-06     0.014      39     181 ..      38     192 ..      18     200 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.9e-06
                 THHSTSEEEEEEESSCTT.....TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEEEEEEEEEEETTT............CGGTTTTS CS
      GATase  39 llknpdgilvsgGpgspg.....vegkieaikearenkiPiLGICLGmQllaiefgrkvvkekekehhggtmrlgddet............allyglkn 120
                 +l+ +dg++++gG  +       +  + e i + + +++P+ G C Gm +la e+       + ++  g +m ++ + +             ++  +++
  KIR66078.1  38 ELDAVDGLVIPGGESTTIskladIFDMREPIDKRIAAGMPVYGSCAGMIMLATEVLDGRPD-Q-RGFAGIEMTVRRN-AfgrqvdsfeapvTIAGVEGE 133
                 46789********988878899977788877777778***********9999887663322.2.4666666666652.245444444444444444445 PP

                 EEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETT.TEEEESSBTTSTTSTTHHH CS
      GATase 121 evierhrHryevnpkelepaglevtakseddeelmeiiekkn.pfvgvQFHPEststpegpe 181
                 ++++ +     v++   + ag++v+++ +++     i+  ++ ++ ++ FHPE t   + ++
  KIR66078.1 134 PFHAVFIRAPWVER---VGAGVDVLGEVTEGPAAGRIVAVRQgNLLATSFHPELTGDLRLHR 192
                 66666666666666...99*********99987778888888559********998776554 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     7e-05      0.25      60     116 ..      40      96 ..      27     113 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7e-05
                 CG-SEEEE--BHHHH.HHHHTSHHHHHHHHHHHHTT-EEEEETTTHHHHHHTTTTTTS CS
   DJ-1_PfpI  60 aeyDalvlpGGragp.erlrenekvvelvkefaekgklvaaICagpqlLaaagvlkgr 116
                 ++ D lv+pGG++    +l++   ++e + +   +g +v   Cag  +++a++vl+gr
  KIR66078.1  40 DAVDGLVIPGGESTTiSKLADIFDMREPIDKRIAAGMPVYGSCAGM-IMLATEVLDGR 96 
                 678********98432667777789999999999***********5.55567788876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1402.26
//
Query:       KIR66079.1  [L=249]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.4e-91  303.5   0.1    1.1e-90  303.3   0.1    1.0  1  Transcrip_reg  Transcriptional regulator


Domain annotation for each model (and alignments):
>> Transcrip_reg  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.3   0.1   5.9e-95   1.1e-90       1     240 []       5     238 ..       5     238 .. 0.97

  Alignments for each domain:
  == domain 1  score: 303.3 bits;  conditional E-value: 5.9e-95
                    .XCHHCCCCCCHCCCCHHHHHHHHHHHHHHHHHTHH-S-GGG-HHHHHHHHHHHHTT--HHHHHHHHHHCCSTS.TS.--EEEEEEEEETTTEEEE CS
  Transcrip_reg   1 skWsnikhkKaandakkgklftklakeItvaakeeggpDpesNprLraaiekakkanvpkdnIeraIkkgagekseganyeevtyegygpggvavi 96 
                    skW+++khkKa  dak+gk+f+kl+k+++vaa++ gg+Dp++Np+L +ai+kakk++vp+dnI+ra+k+g+g +++ga+ ++++yegygp+gva++
     KIR66079.1   5 SKWATTKHKKAVIDAKRGKMFAKLIKNVEVAART-GGGDPAGNPTLYDAIQKAKKNSVPNDNIDRAVKRGSGLEAGGADWQTIMYEGYGPNGVAML 99 
                    8********************************7.999**********************************87777******************* PP

                    EEEEES-HHHHHHHHHHHHHHTT-EEE-TTSSGGGEEEEEEEEEECCHCT-HHHHHHHHHHHHTESEEEEETTTC.EEEEEEGGGHHHHHHHHHHT CS
  Transcrip_reg  97 vealTdnknrtaaevrsifsknggnlgesgsvsflFerkgvivveekeeevdedelleaaieaGaeDveedeeeevievitepedlaavkkaLeea 192
                    +e+lTdn+nr+a+evr+++++ngg+l+++gsvs++F+rkgv++v +k+ +++ed++++a+++aGae+v++    e +ev+ ep+dl av++aL++a
     KIR66079.1 100 IECLTDNRNRAATEVRTALTRNGGSLADAGSVSYMFSRKGVVIV-PKA-GTSEDDVMMAVLDAGAEEVND--LGEAYEVVSEPSDLIAVRTALQDA 191
                    ********************************************.664.9*******************6..3578******************** PP

                    TT---SEEEEEEEESS-EE--HHHHHHHHHHHHHHHTSTTEEEEEESE CS
  Transcrip_reg 193 gglevesaeleyipkeeveldeeeaekleklidaLeeldDVqnvytNi 240
                     g+e+esae ++ip+ +v+lde+ a+k+ klid Le++dDVqnv++N+
     KIR66079.1 192 -GIEYESAESSLIPSVNVQLDEDGARKVFKLIDVLEDCDDVQNVFANF 238
                    .568******************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1969.31
//
Query:       KIR66080.1  [L=317]
Description: hypothetical protein TK50_12630 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.04   14.3   0.1       0.04   14.3   0.1    2.8  3  DUF2628   Protein of unknown function (DUF2628)


Domain annotation for each model (and alignments):
>> DUF2628  Protein of unknown function (DUF2628)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   2.2e-06      0.04      27      83 ..      72     140 ..      39     150 .. 0.75
   2 ?   -1.3   2.2      0.16     3e+03      40      62 ..     214     237 ..     211     265 .. 0.50
   3 ?   -3.2   0.3      0.64   1.1e+04      54      60 ..     293     299 ..     283     312 .. 0.47

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.2e-06
     DUF2628  27 wAfffgfiwLlyrklwlkalvllviavavsvvlavl..............gfsdavrlllalliaillgle 83 
                 + ++ + ++L++r+l + +l+ + ia+ + v  avl              g+  ++ +++++++++ l+++
  KIR66080.1  72 LQLIGPAYYLAWRRLLRLLLATVPIAIGALV--AVLdavdgdsvgsaigvGVTTGIEVVVQVAFWVTLTFA 140
                 55778899*******9988777777665444..34444699988888877777888888888888877766 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.16
     DUF2628  40 klwlkal.vllviavavsvvlavl 62 
                 + wl+al +llv +++++v+ + +
  KIR66080.1 214 RFWLPALiALLVAEIVLQVARHRA 237
                 567766514555556666654444 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.64
     DUF2628  54 avsvvla 60 
                 a+++v+a
  KIR66080.1 293 ALVAVVA 299
                 2222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2285.13
//
Query:       KIR66081.1  [L=113]
Description: PadR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-18   65.9   0.0    3.5e-18   65.3   0.0    1.3  1  PadR      Transcriptional regulator PadR-like family
     0.0032   17.3   0.2      0.092   12.6   0.0    2.1  2  HxlR      HxlR-like helix-turn-helix
  ------ inclusion threshold ------
      0.022   15.3   0.0      0.079   13.5   0.0    1.9  2  HTH_27    Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   5.9e-22   3.5e-18       6      74 ..      27      91 ..      21      92 .. 0.93

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 5.9e-22
                CCS-EEHHHHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHH CS
        PadR  6 eeqpsyGyeiikeleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrela 74
                 ++p yGy++ ++l+++  g + + + +lYp+L+rLe++gl++sew+++ e++prk+Yr  d+G++ l+
  KIR66081.1 27 LRRPDYGYALLQRLTDH--G-FPVDANTLYPLLRRLEEQGLLTSEWNTE-ESRPRKFYRTSDEGESVLR 91
                36899************..9.9*************************96.9*************99886 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.011        67      31      63 ..       2      34 ..       1      48 [. 0.77
   2 !   12.6   0.0   1.5e-05     0.092      33      76 ..      49      93 ..      35     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.011
                S-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEE CS
        HxlR 31 isqkmLaqrLreLeqdglierevypevPpkveY 63
                +s  +L ++L+eL +  ++ ++ +    p   Y
  KIR66081.1  2 VSDDILRTHLQELRRGTVVVASLVALRRPDYGY 34
                78999*********9999988776655555555 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.5e-05
                HHHHHHHHHHHHHTTSEEEEEE.SSSS-EEEEEE-TCGGGGHHHH CS
        HxlR 33 qkmLaqrLreLeqdglierevy.pevPpkveYsltekGrslepvl 76
                 ++L   Lr+Le++gl+  e   +e  p+  Y+ +++G+s+  +l
  KIR66081.1 49 ANTLYPLLRRLEEQGLLTSEWNtEESRPRKFYRTSDEGESVLRLL 93
                5678889**********99865156678999********997766 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.56   3.3e+03      37      47 ..      22      32 ..      15      45 .. 0.68
   2 ?   13.5   0.0   1.3e-05     0.079      38      68 .]      55      86 ..      46      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.56
      HTH_27 37 yslkkLtekGL 47
                 sl +L ++++
  KIR66081.1 22 ASLVALRRPDY 32
                66667776665 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.3e-05
      HTH_27 38 slkkLtekGLvertgdeadrre.krvrlTdkG 68
                 l++L+e+GL++++   ++ r+ k++r +d+G
  KIR66081.1 55 LLRRLEEQGLLTSEWNTEESRPrKFYRTSDEG 86
                79*********777666666666*******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 890.52
//
Query:       KIR66082.1  [L=297]
Description: hypothetical protein TK50_12640 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        1.9    8.2   7.1        3.4    7.5   7.1    1.4  1  MCPVI           Minor capsid protein VI
        4.2    5.7  14.4        5.5    5.3  14.4    1.1  1  Neisseria_TspB  Neisseria meningitidis TspB protein


Domain annotation for each model (and alignments):
>> MCPVI  Minor capsid protein VI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   7.1   0.00038       3.4     128     184 ..     191     247 ..     177     279 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00038
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       MCPVI 128 pkdeeavkqgeptvePiaPeaksvlvPvtldlpesvdevkkPvlssesavvvsrPsr 184
                 ++ e  ++ + pt+ P +P a+++ +P+  +  +s++    P+ s +++ + + P+ 
  KIR66082.1 191 ANCERPLAPTSPTATPTQPSASPTETPTASPTQPSASPTVTPTASPSPTQPTQSPTA 247
                 66788899999**************************99999999889999999854 PP

>> Neisseria_TspB  Neisseria meningitidis TspB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  14.4   0.00062       5.5     300     398 ..     154     253 ..     125     258 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.00062
  Neisseria_TspB 300 ngnpvqvvatfgrdaqgnttvdvqviprpdltpasaeapnaqplpevspaenpan.npdpdenpgtrp.npepdpdlnpdanpdtdgqpgtrpds 392
                       +    va +       + v  qvi  p  t   aea   +pl   sp+  p++    p e p ++p +p   p + p a p    qp  +p +
      KIR66082.1 154 TADTAAAVAVLATVRLTGSVVGGQVIDIPVGTVILAEANCERPLAPTSPTATPTQpSASPTETPTASPtQPSASPTVTPTASPS-PTQPTQSPTA 247
                     44444445555555556677889*****************************9973578********955999*********96.5799999998 PP

  Neisseria_TspB 393 pavpdr 398
                        p r
      KIR66082.1 248 SPYPTR 253
                     877777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2272.93
//
Query:       KIR66083.1  [L=398]
Description: hypothetical protein TK50_12650 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-23   80.6   0.2    1.7e-22   79.3   0.1    1.8  2  DUF1205          Protein of unknown function (DUF1205)
    1.6e-07   30.5   0.0    8.5e-07   28.1   0.0    1.8  2  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
    0.00053   20.0   0.0    0.00086   19.3   0.0    1.3  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
  ------ inclusion threshold ------
       0.27   11.2   3.2        0.5   10.4   0.2    2.7  2  Glyco_transf_4   Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> DUF1205  Protein of unknown function (DUF1205)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.7   7.6e+03      54      72 ..      65      83 ..      53      85 .. 0.79
   2 !   79.3   0.1   3.9e-26   1.7e-22       1      95 []     192     286 ..     192     286 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.7
                ------STTTTHHHHHTSS CS
     DUF1205 54 dladadlleavldqvaelD 72
                + ++a+ +++ ld+++ +D
  KIR66083.1 65 NRQQAQRYKESLDSAVPVD 83
                6778889999999999998 PP

  == domain 2  score: 79.3 bits;  conditional E-value: 3.9e-26
                 EE-S-GGGS------EEE-------SS----GGGSS--SS-EEEEE-------------STTTTHHHHHTSSSEEEE---TTTTSS-SS--SSEE CS
     DUF1205   1 idvaPpslrlddgketvsmryvpyNgasvveeWlkkksarkRvcvtlGtskaedladadlleavldqvaelDaEivvaldeearselrelpdnvR 95 
                 +d+ P sl+l d +  ++ r+vp Nga+  ++Wl + + r+Rvcvt Gt++++  ad  +l++v++++a+ D E+v+a+   +r+ l++lpdnvR
  KIR66083.1 192 VDPWPGSLQLPDVVGRIPTRFVPHNGAAAAPDWLLEPPSRPRVCVTWGTTTTMLGADDTVLARVVGALAAGDVEVVLAVVRADRERLGALPDNVR 286
                 7999*************************************************999999***********************************9 PP

>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.07   3.1e+02     105     146 ..     102     143 ..      43     147 .. 0.77
   2 !   28.1   0.0   1.9e-10   8.5e-07     315     414 ..     276     373 ..     251     381 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.07
       UDPGT 105 vsnkkllkklqeskfdvvladpvlpcgellAellkiptvyll 146
                 v+  +ll+ +   + d v++dp++ ++ ll + l +p+v  l
  KIR66083.1 102 VMAPDLLRFARRWEPDLVITDPLMLAAPLLSQTLGVPLVRHL 143
                 44556777777888899********************98765 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 1.9e-10
       UDPGT 315 kkPstLakntllvkWlPqndlLgHPktkAFvtHaGangvyEaisnGvPmvglPlFgdqrdNikrmeakgaavtlnvkemtsedllnAlkevindksyke 413
                 ++ + L  n ++ + +P n  L   + +A v  +Ga +v+ a ++GvP v+lP  +d +  + + +a ga+  l+ ++  ++ +++A+++ + d   ++
  KIR66083.1 276 ERLGALPDNVRVADNVPINLYLE--SCGAVVNAGGAGSVLTAACHGVPQVMLPQASDTPAVAFNFSASGAGTMLDATTADTATIASAVDAALTDGKIRD 372
                 56667888888889999887775..789*************************************************************9999876666 PP

       UDPGT 414 n 414
                  
  KIR66083.1 373 A 373
                 5 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.9e-07   0.00086      55     147 ..     283     370 ..     265     391 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.9e-07
                      CEEEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS--- CS
  Glyco_tran_28_C  55 lkvevfefidkmaeaikaadLvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaeklr 147
                      ++v+v + ++ ++ ++++   v+  +Gag+++ ++ +g+p ++ p  +    +    a  ++  ga+++l+ +++++ ++++a+++ +++++ 
       KIR66083.1 283 DNVRVADNVP-INLYLESCGAVVNAGGAGSVLTAACHGVPQVMLPQAS----DTPAVAFNFSASGAGTMLDATTADTATIASAVDAALTDGKI 370
                      6777777777.88899999999999***********************....88999****************************99998864 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00011       0.5      50     107 ..      93     147 ..      20     169 .. 0.67
   2 ?   -0.5   0.1      0.24   1.1e+03       7      38 ..     251     282 ..     245     299 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
  Glyco_transf_4  50 llkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrlgiplVltvHgly 107
                     l++       ++++l r ++r++pD+v   +p  l a ll   + lg+plV ++ g++
      KIR66083.1  93 LRPLVETVTVMAPDLLRFARRWEPDLVI-TDPLMLAAPLL--SQTLGVPLVRHLTGPD 147
                     344444455678899************5.55444444444..4459*****8875555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.24
  Glyco_transf_4   7 hvleLaraLarrGheVtvvtpgddgpleeeve 38 
                     ++ +++ aLa+  +eV++ + + d++   + +
      KIR66083.1 251 VLARVVGALAAGDVEVVLAVVRADRERLGALP 282
                     56677788888888888885555544444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2883.13
//
Query:       KIR66084.1  [L=433]
Description: lipopolysaccharide biosynthesis protein RfbH [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-95  320.3   0.0    2.1e-95  320.1   0.0    1.0  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
     0.0003   20.1   0.0    0.00047   19.5   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
     0.0062   15.1   0.0     0.0087   14.6   0.0    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
      0.012   14.6   0.0      0.031   13.2   0.0    1.5  2  Aminotran_5      Aminotransferase class-V
       0.06   13.9   0.0       0.17   12.5   0.0    1.8  2  ATPgrasp_N       ATP-grasp N-terminal domain


Domain annotation for each model (and alignments):
>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.1   0.0     6e-99   2.1e-95       6     360 ..      43     425 ..      38     426 .. 0.92

  Alignments for each domain:
  == domain 1  score: 320.1 bits;  conditional E-value: 6e-99
                      HHHHHHHHHTSS-SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHH...TTTT.....TT-EEEEESSS-THHHHHHHHTT-EEEEE- CS
  DegT_DnrJ_EryC1   6 eleaveevlksgwltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLra...lgvg.....pgdeVIvpsltFvatanavlelgakpvfvD 91 
                      + + ve++l+   +  gp  ++FE++f++y g + a  ++sG++A++laL+a    ++g     pgdeVI+++++F +t+n+vl++g+kpvfvD
       KIR66084.1  43 RVALVEAALEM-RIAAGPSARRFEREFSRYFGLRKAHLTNSGSSANLLALSAltsPQLGdarlrPGDEVITAAAGFPTTVNPVLQNGLKPVFVD 135
                      55566666666.7888************************************877444466677****************************** PP

                      B-TTTSSB-GGGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS-SSS-EEEEE CS
  DegT_DnrJ_EryC1  92 vdpdtynidpaaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnlttGeGGavvt 185
                      v+  tyn++p++i++ai +rt+aI+++h++G+++ ++++ a+a++h+l++ieD ++A+G+ y+g+ +G++g +a++SFyp++++t GeGG v+t
       KIR66084.1 136 VELGTYNPTPERIAEAIGPRTRAIMTAHALGNPFAVAEVAALAREHDLYLIEDNCDAVGSLYQGRLTGTFGHFATVSFYPAHHITFGEGGCVLT 229
                      ********************************************************************************************** PP

                      STHHHHHHHHHHHBTTCEC....CTCSSCECCS..................S---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHT CS
  DegT_DnrJ_EryC1 186 ndeelaekarvlrnhGlkr....kaekryvgev..................elGynyrlteiqAAiglaqLerldelvarRreiaelykeeLae 257
                      nd +la+ ++ +r  G++      +++r  +++                  ++Gyn++ t+++A+igl+qL+r+de+ + Rr+++ l++++L +
       KIR66084.1 230 NDLALARLVESIRDWGRDCwcepGEDDRCLKRFdqqlgslprgydhkyifsHVGYNLKSTDLHASIGLSQLQRIDEFGEARRRNWRLLRDGLDG 323
                      **********777777765555444444444445555777****************************************************** PP

                      CCCCEESCGGTTSSSEEESCEEEEEHCCHHHCHHHHHHHHHHCCEE-B-SGSCHGGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHH CS
  DegT_DnrJ_EryC1 258 legtaelttpketkkhawhlyavlveeeaevkrdelvealkeegigtrvhypnplhrqpvyaerkeeasgdlpnaerlaervlsLplypeltee 351
                      l+g + ++ ++ ++  +w+ ++++v+ +a  +r+elv++l+ + i+tr ++   l r+p+ya+++++ +gdl +++ +++ ++++ +yp++t e
       KIR66084.1 324 LDGLLLPEPTPGSD-PSWFGFVLTVQPDAPYTRQELVAFLEGRRIATRRFFGGNLTRHPAYADVEYRIAGDLSVSDIITQHTFWIGVYPGITGE 416
                      ***98877777777.8************99*********************999**************************************** PP

                      HHHHHHHHH CS
  DegT_DnrJ_EryC1 352 dvdrVveal 360
                       +++Vv+++
       KIR66084.1 417 MIQYVVDSI 425
                      ******987 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.3e-07   0.00047      30     168 ..      57     189 ..      42     193 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.3e-07
                      --HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT......-HHHHSSTTHHHHCC--EEEEE-EBTT.TBE-HHHHHH CS
  Beta_elim_lyase  30 edktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtep......ahihfdetgaiaelagvklrdlknkea.Gkmdleklea 116
                        ++ +r+e ++ ++fg  +a  + +G  An ++l++l+ ++ +    +p      a   f +t +++  +g k++ ++ +    + ++e++++
       KIR66084.1  57 AGPSARRFEREFSRYFGLRKAHLTNSGSSANLLALSALTSPQLGDARLRPgdevitAAAGFPTTVNPVLQNGLKPVFVDVELGtYNPTPERIAE 150
                      568999*****************************9999877666666667788889999*******************999334567889999 PP

                      HS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEE CS
  Beta_elim_lyase 117 aikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDg 168
                      ai +      ++++i+++ +      ++     ++evaa+a+++++ l+ D 
       KIR66084.1 151 AIGP------RTRAIMTAHALG----NPF---AVAEVAALAREHDLYLIEDN 189
                      9988......588999876665....555...56789999****99998775 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.4e-06    0.0087      52     181 ..      59     196 ..      31     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.4e-06
                      HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTT.........S-TTEEEEEESTSSHHHHH.HHHHTHHHTTCEEEEEST.TSHHHHHHHC CS
  Cys_Met_Meta_PP  52 ptrsvleeriaaLeggeaalavssGmaAiaaailal.........lkaGdeivvsddlYggtqr.llkkvlkklgievkfvdt.sdleelekai 134
                      p  + +e++ +   g  +a +++sG +A  +a+ al         l+ Gde+++    +  t + +l++ lk + ++v+       +e++++ai
       KIR66084.1  59 PSARRFEREFSRYFGLRKAHLTNSGSSANLLALSALtspqlgdarLRPGDEVITAAAGFPTTVNpVLQNGLKPVFVDVELGTYnPTPERIAEAI 152
                      778888899999999999***********9999998333333333456777999999999997646778888877766654432489******* PP

                      CTTEEEEEE.ESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTT CS
  Cys_Met_Meta_PP 135 kentklvyl.EtptnpllkvvDiekiaklakkagvlvvvDntfaspll 181
                       ++t+++ +  +++np+     ++++a+la+++++ ++ Dn+ a + l
       KIR66084.1 153 GPRTRAIMTaHALGNPFA----VAEVAALAREHDLYLIEDNCDAVGSL 196
                      *****9985278999986....899****************9777755 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.7e-06     0.031      71     182 ..      83     195 ..      78     198 .. 0.77
   2 ?   -1.9   0.0      0.34   1.2e+03     263     368 ..     293     418 ..     290     421 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.7e-06
                  HHHHHHHHHHCCCC.......-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBE.TTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHH CS
  Aminotran_5  71 teainlvalslars.......lkpgdeivvteaehhanlvpwqelakrtgakvkvipld.eegeldldelekllnektklvaithvsnvtGtiqpvee 160
                  +++ nl als++ s       l+pgde+++ +a+   +++p  +     g+k +++ ++  + + +++++++++ ++t++++ +h   ++G+ + v+e
   KIR66084.1  83 GSSANLLALSALTSpqlgdarLRPGDEVITAAAGFPTTVNPVLQN----GLKPVFVDVElGTYNPTPERIAEAIGPRTRAIMTAH---ALGNPFAVAE 173
                  4455555555443334444589*****************887655....555555555213445679**************9999...59******** PP

                  HHHHHHHTT-EEEEE-TTTTTT CS
  Aminotran_5 161 igklakkkgalvlvDaaqavgh 182
                  +++la++++ +++ D + avg+
   KIR66084.1 174 VAALAREHDLYLIEDNCDAVGS 195
                  *************999999886 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.34
                  HHHHHHHCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSH......HHHHHHHHHTTEEEEE...E-TTTHHHHHHTT. CS
  Aminotran_5 263 aaleyleeigleaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnfkgvha......edvatlLdeegIavrs...Ghhcaqplmkrlal 351
                  a + + + + +++  +  ++    l+++l+ l+g+ l +p +   ++s + f+++   +      ++++ +L+ + Ia r    G+ + +p+++ ++ 
   KIR66084.1 293 ASIGLSQLQRIDEFGEARRRNWRLLRDGLDGLDGLLLPEP-TPGSDPSWFGFVLTVQ-PdapytrQELVAFLEGRRIATRRffgGNLTRHPAYADVEY 388
                  5666666667777777777777888888888888888664.5577777777776421.1124444889999999999999888677777888777776 PP

                  S.............-EEEEE--TTS-HHHH CS
  Aminotran_5 352 e.............gtvRaSlyiynteeev 368
                  +             +t++++ y   t e +
   KIR66084.1 389 RiagdlsvsdiitqHTFWIGVYPGITGEMI 418
                  666666666666666666666666666655 PP

>> ATPgrasp_N  ATP-grasp N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.6e-05      0.17      38      64 ..       2      28 ..       1      41 [. 0.81
   2 ?   -2.6   0.0       2.3   8.4e+03      41      41 ..     167     167 ..     128     183 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.6e-05
                TT-HHHHHHHHHHHHHHS--SEEE--- CS
  ATPgrasp_N 38 aqdpdaaleavralsrerpvdGivtft 64
                 +d+da+le vr+++r+++vdG+v  t
  KIR66084.1  2 GEDKDAILELVRKYHRDQRVDGFVPGT 28
                5799******************98655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.3
                 H CS
  ATPgrasp_N  41 p 41 
                 +
  KIR66084.1 167 N 167
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3121.97
//
Query:       KIR66085.1  [L=305]
Description: hypothetical protein TK50_12660 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-44  150.0   0.0    8.6e-44  149.8   0.0    1.0  1  RmlD_sub_bind    RmlD substrate binding domain
      5e-15   55.6   0.0    7.9e-15   55.0   0.0    1.3  1  Epimerase        NAD dependent epimerase/dehydratase family
    3.7e-12   45.8   0.0    5.5e-12   45.3   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
      1e-10   41.5   0.0    1.5e-10   41.0   0.0    1.1  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    4.4e-09   35.9   0.0    8.2e-09   35.0   0.0    1.4  1  NAD_binding_4    Male sterility protein
    7.8e-06   25.9   0.0    2.4e-05   24.3   0.0    1.6  2  KR               KR domain
    1.3e-05   25.2   0.0    2.1e-05   24.5   0.0    1.2  1  NAD_binding_10   NAD(P)H-binding
    1.7e-05   24.1   0.1    2.5e-05   23.5   0.1    1.1  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0015   18.2   0.0     0.0024   17.5   0.0    1.2  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.8   0.0   4.3e-47   8.6e-44       6     285 ..      12     291 ..      10     293 .. 0.91

  Alignments for each domain:
  == domain 1  score: 149.8 bits;  conditional E-value: 4.3e-47
                    ESTTSHHHHHHHHHCTTTSEEEEEE-TTT--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHH....HHHHTHHHHHHHHHHHHCT-EEE CS
  RmlD_sub_bind   6 tGanGqlGseLakqlaeeglevlaltreeldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaa....yavnaeavealAeaaaavgalLi 97 
                    tG +G++G   +++ + +g+ +l +     d+tda+av+++++++  +vvv+ AA+t+  +a  +  ++    y+vn++++++lA+a+++ +  Li
     KIR66085.1  12 TGLRGMVGDRAVELGEPHGWRALDC-----DVTDAAAVRRAVAQTPAEVVVHFAAFTDLAAAHAQTGERggscYRVNVDGTRNLAQACRENDKYLI 102
                    7889999999999999999776655.....******************************99988544323339********************** PP

                    EEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHHH-SSEEEEEE-SEESS...SSS-HHHHHHHHHHH-SEEEEESS-EE--EEHHHHH CS
  RmlD_sub_bind  98 hvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavlaagkkalivRtswvyge...kgknfvktmlrlakereelkvvaDqlgsPTsardlA 190
                    hvStDyVF G++++pY+e+d ++P+  Y rtK+  E  v+ +g ++ i+R s  + +   ++ + v++m++ ++   +  ++ D l sP  +++  
     KIR66085.1 103 HVSTDYVFSGAEQEPYRESDMPAPQDWYSRTKYWAEGEVRGSGCRFSILRPSFPFRAryaRRGDIVRKMISGLTAGRTPPMFCDTLVSPVFVDEFV 198
                    *******************************************************66566889*****************************9998 PP

                    HHHHHHHHHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHCHTTSEEEEE-CCCS--SS---..SBE-B--HHHHHCCT----BHHHHHHHHHHH CS
  RmlD_sub_bind 191 evllqllekaaeekelagvyHlanegetswlefArailkeagadseevkpistaeyptpAkRP..anSvLdtekleatfgiklrewrealkevlke 284
                    +++  ++e +       g++H+a+  ++s +++   +++ ++ ds++v+p + a+y++ A RP  ++  +++e+++++ gi+  + ++al+++ ++
     KIR66085.1 199 AAIDRVAELRPP----EGLFHCAGGTSLSPYDLVVLVARVFDLDSSQVSPGHYADYARTAGRPypRYLNISNERAAQVLGIRFSPIEAALETMRDQ 290
                    888888877665....9*********************************************6337888899999999********9999999777 PP

                    H CS
  RmlD_sub_bind 285 l 285
                    l
     KIR66085.1 291 L 291
                    5 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0     4e-18   7.9e-15      44     226 ..      32     205 ..      12     217 .. 0.77

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 4e-18
                 EEEE--TT-HHHHHHHHHHHT-SEEEE--S.-...--HHHHHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS---- CS
   Epimerase  44 elveldltdrsalerlfkeeqpdavihlAa.v...ggvaassedpadfieknlqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkp 138
                 +  ++d+td++a++r+++++ +++v+h+Aa     +  a++ e+   +++ n+ gt+nl++a+r+++   l+++s++ v+   ++ p  e+      +p
  KIR66085.1  32 RALDCDVTDAAAVRRAVAQTPAEVVVHFAAfTdlaAAHAQTGERGGSCYRVNVDGTRNLAQACRENDK-YLIHVSTDYVFSGAEQEPYRESD---MPAP 126
                 6789*************************9652223344455677789*******************9.***********977776855555...578* PP

                 SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHH CS
   Epimerase 139 nspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvl 226
                 +  Y+++K+ +e  v+      g+++ ilr++  + +r    ++  ++ ++i+ + +g+    ++   + l   ++v++ + ai +v+
  KIR66085.1 127 QDWYSRTKYWAEGEVRG----SGCRFSILRPSFPFRAR--YARRGDIVRKMISGLTAGR-TPPMFC--DTLVSPVFVDEFVAAIDRVA 205
                 ***********999996....48999999999999888..5556777777777777777.444433..34445666666666666665 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   2.8e-15   5.5e-12      49     157 ..      33     141 ..      20     147 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 2.8e-15
   3Beta_HSD  49 viegDvtdkdkleealeg..vdvvihlaslvdvag.klte....deimkvnvkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyes 140
                  + +Dvtd++ +++a+ +  ++vv+h a+ +d+a  + ++    +++++vnv GTrn+ +ac++++ ++l+++S+ + v+   ++e+ ++        +
  KIR66085.1  33 ALDCDVTDAAAVRRAVAQtpAEVVVHFAAFTDLAAaHAQTgergGSCYRVNVDGTRNLAQACREND-KYLIHVST-DYVFSGAEQEPYRE-----SDMP 124
                 578***********99764479**********98743332222268*****************998.9*****98.56677455566552.....2345 PP

   3Beta_HSD 141 lhqdaypesKalaEklv 157
                  +qd y+++K  aE  v
  KIR66085.1 125 APQDWYSRTKYWAEGEV 141
                 699**********9877 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   7.7e-14   1.5e-10      57     161 ..      34     138 ..      22     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 7.7e-14
                    EE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSH....HHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS--- CS
  GDP_Man_Dehyd  57 hkgDltDssslerllaevqpdevynLAAqshVdvsfekP....eytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfy 148
                      +D+tD+++++r++a++  + v+++AA    +    +        ++vnv Gt +L +a+r+     ++ ++++St+ v+  +++ p++E+    
     KIR66085.1  34 LDCDVTDAAAVRRAVAQTPAEVVVHFAAFTDLAAAHAQTgergGSCYRVNVDGTRNLAQACREN----DKYLIHVSTDYVFSGAEQEPYRESDMPA 125
                    679*************************9988877655411116799***************95....46799*********************** PP

                    --SHHHHHHHHHH CS
  GDP_Man_Dehyd 149 PrsPYaaaKlyad 161
                    P+  Y+ +K  a+
     KIR66085.1 126 PQDWYSRTKYWAE 138
                    *********9886 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   4.1e-12   8.2e-09      88     240 ..      53     186 ..      41     201 .. 0.68

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 4.1e-12
                    --EEEE--SS-S.STTSSE.......EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHH CS
  NAD_binding_4  88 vdviihsaAtvnfdepyke.......llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntY 176
                     +v++h aA +++ +   +       ++rvNv+Gtr++ + +++    k l+hvST yv    e+e     y             ++++   ++ Y
     KIR66085.1  53 AEVVVHFAAFTDLAAAHAQtgerggsCYRVNVDGTRNLAQACREN--DKYLIHVSTDYVFSGAEQEP----Y------------RESDMPAPQDWY 130
                    578899988888877444334445559***********9999954..447******77777666432....3............34555566778* PP

                    HHHHHHHHHHHHHHHHHH---EEEEEE-EEE--SSST---TTSHHHHHHHHHHHH-EEES-SB- CS
  NAD_binding_4 177 eqsKalaEklvrearrrsglpvvivRpsiitgesktGwingsdlgirgllgliakgvlpeilgd 240
                    +++K+ aE  vr  +     +++i+Rps         ++ + d ++r ++++   g+ p +++d
     KIR66085.1 131 SRTKYWAEGEVRGSG----CRFSILRPSFPFRAR---YARRGD-IVRKMISGLTAGRTPPMFCD 186
                    *********999877....5568****9855433...234444.56666666666666666666 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.2e-08   2.4e-05      57     147 ..      33     116 ..      29     121 .. 0.83
   2 ?   -2.1   0.0       1.5     3e+03      74      91 ..     203     219 ..     193     225 .. 0.66

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.2e-08
                 E----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-H CS
          KR  57 vvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqa 147
                 ++++Dv+d++av++++++  ae      v+h A +++ ++   +t e+  ++++  v+G++nL +++++   d  ++  S   ++  a+q 
  KIR66085.1  33 ALDCDVTDAAAVRRAVAQTPAEV-----VVHFAAFTDLAAAHAQTGERGGSCYRVNVDGTRNLAQACRE--NDKYLIHVSTDYVFSGAEQE 116
                 689***************98766.....***************************************95..44444444555555555555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.5
                 HHHHHSS---EEEE---- CS
          KR  74 eikaeeppikGvihaAgv 91 
                 ++  e +p +G +h+Ag 
  KIR66085.1 203 RVA-ELRPPEGLFHCAGG 219
                 332.3467799****986 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     1e-08   2.1e-05      34     145 ..      24     155 ..      15     170 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1e-08
                     HHHCTTTCEEEE--TT-CCHHHHHHTT-SE.EEES-.............--TCCHHHH............HHHHHHHHHHCT--EEEEEEETTTT CS
  NAD_binding_10  34 eleaeeglevvegdvtdvedlaealkgada.Vvsal.............ggggkdeeg............aknivdaakeagvkRfvlvsaigvg 102
                     el +  g ++++ dvtd++++++a++++ a Vv+ +             g                    ++n+++a++e++ k ++ vs+  v 
      KIR66085.1  24 ELGEPHGWRALDCDVTDAAAVRRAVAQTPAeVVVHFaaftdlaaahaqtG-------ErggscyrvnvdgTRNLAQACREND-KYLIHVSTDYVF 110
                     56677788999***************987655555534677664433321.......0334555555666********9865.788999986554 PP

                     S.GCGCHHHHHHHHCCHHHH.HHHHHHHHHHHHSSSEEEEEEE-C CS
  NAD_binding_10 103 d.evpgefgewnkellkayl.aakraaeellrasgldwTivrpgg 145
                         +++  e ++ + ++++ + k+ ae ++r sg  + i+rp++
      KIR66085.1 111 SgAEQEPYRESDMPAPQDWYsRTKYWAEGEVRGSGCRFSILRPSF 155
                     31233444444455566666478999*****************86 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   1.3e-08   2.5e-05      61     130 ..      36     108 ..      31     113 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.3e-08
                      --TT-HHHHHHHTT..T-SEEEE------HHHHHHSHHH....HHHHHHHHHHHHHHHHHHTT-SEEEEEEEGG CS
  Polysacc_synt_2  61 gdvrdkerlekaleelkvdvvfhaAAlKhVPlveenple....aiktNvlgtenvieaaieagvkkvvliStDK 130
                      +dv+d++ +++a+ ++  +vv+h AA+  + ++  ++ e    + + Nv gt+n+++a+ e++ k ++ +StD 
       KIR66085.1  36 CDVTDAAAVRRAVAQTPAEVVVHFAAFTDLAAAHAQTGErggsCYRVNVDGTRNLAQACREND-KYLIHVSTDY 108
                      79****************************99998876544449***************9987.89******95 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.2e-06    0.0024      33     115 ..      21      96 ..      11     105 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.2e-06
                   HHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHH CS
  adh_short_C2  33 rveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalp 115
                   r+ el e +g ++l cDVtd ++v+++v+++ ++     ++v+ a++++   + ++  + e       vn+ ++ +la+a+++
    KIR66085.1  21 RAVELGEPHGWRALDCDVTDAAAVRRAVAQTPAE-----VVVHFAAFTDL--AAAHAQTGERGGSCYRVNVDGTRNLAQACRE 96 
                   5566777778889*****************9887.....7**********..9999999********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2422.66
//
Query:       KIR66086.1  [L=387]
Description: hypothetical protein TK50_12675 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-29  103.3   0.6    3.5e-25   88.7   1.5    3.0  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00011         2      43     127 ..      28     110 ..      23     113 .. 0.79
   2 !   88.7   1.5   1.9e-29   3.5e-25     207     434 ..     169     359 ..     164     368 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00011
                 TEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHH CS
        p450  43 skpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleelveeeaedlve 127
                 +++  ++ ++ +v++v+ + + ++s+    +l+  +    +  ++  ++++++++lR+++ +++t +     +++++ e++ +l++
  KIR66086.1  28 EHNRYFVFRYADVQAVFSDPARFSSNI--GRLMPVFGAEKLSANLPWQDPPDHRRLRQLVSQAFTPK-TVaGMRPRIGEVVGQLLA 110
                 566678888999999999998555553..44444455689999999*******************99.5569*****999988875 PP

  == domain 2  score: 88.7 bits;  conditional E-value: 1.9e-29
                 HHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH CS
        p450 207 rklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEide 305
                 + + ea+k+l+++l + +++rr++ +++     d l al  a+   +ge  l+d ++a+ +  ll  G+ Tt+  l  +L++L +nP++++++r +   
  KIR66086.1 169 EAIAEATKELDEYLLAEVRQRRAKGSTD-----DVLGALAAAE--LNGE-RLTDLQVATFAALLLNTGHITTTLLLGNTLLCLDDNPDAEARIRAD--- 256
                 6678899999******999999999999.....9999999995..8887.9*******************************************98... PP

                 HCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--T CS
        p450 306 vlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflP 404
                                  ++ a+++E+ R +p+ p +  R +t+dv+i g +ip++  v++++ + ++d+ +f++Pe+Fd++R  d        + ++++
  KIR66086.1 257 ---------------RSLVPAALEEVVRRRPPFP-RACRIATTDVEIAGEVIPADAFVMPSILSANHDERQFEKPEQFDIQR--D--------PNRHFG 329
                 ...............369****************.999******************************************98..3........33589* PP

                 TEEGGGS-TTHHHHHHHHHHHHHHHHHHEE CS
        p450 405 FGaGpRnCiGerlArmelklflatlLqnFe 434
                 FG G + C+G +lAr+e +++l +l+ +F+
  KIR66086.1 330 FGHGIHFCLGAPLARLETEIALNRLMTEFT 359
                 **************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2466.72
//
Query:       KIR66087.1  [L=394]
Description: hypothetical protein TK50_12680 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-16   60.4   0.0    2.3e-16   59.7   0.0    1.4  1  DUF1205          Protein of unknown function (DUF1205)
    4.5e-05   22.4   0.0    6.1e-05   22.0   0.0    1.1  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
    0.00011   22.3   0.0    0.00016   21.7   0.0    1.2  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
    0.00087   19.7   0.4     0.0048   17.3   0.3    2.0  2  Glyco_trans_1_4  Glycosyl transferases group 1
  ------ inclusion threshold ------
       0.11   12.5   5.2       0.17   11.9   0.5    2.8  3  Glyco_transf_4   Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> DUF1205  Protein of unknown function (DUF1205)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   6.4e-20   2.3e-16       1      95 []     188     283 ..     188     283 .. 0.97

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 6.4e-20
                 EE-S-GGGS------EEE-------SS----GGGSS--SS-EEEEE-------.------STTTTHHHHHTSSSEEEE---TTTTSS-SS--SSEE CS
     DUF1205   1 idvaPpslrlddgketvsmryvpyNgasvveeWlkkksarkRvcvtlGtskae.dladadlleavldqvaelDaEivvaldeearselrelpdnvR 95 
                 id+ P s+++ d+ + +++r++py ga+  +eW   ++ r+Rvc++ G       +a+ + l ++ld++a+ D E+vv+ ++ +r+ l++lp+ vR
  KIR66087.1 188 IDPWPGSIQVPDAHARIPVRHIPYHGAAPSPEWAWGRAGRPRVCLSWGEPGDAaRAAQSPALPRILDALARRDVEVVVTGSGIDRDRLGALPETVR 283
                 899*********************************************9877768999*************************************9 PP

>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.7e-08   6.1e-05     336     411 ..     294     366 ..     250     376 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.7e-08
       UDPGT 336 LgHPktkAFvtHaGangvyEaisnGvPmvglPlFgdqrdNikrmeakgaavtlnvkemtsedllnAlkevindksy 411
                 L  P   A v+ +G+++++ a   GvP v +Pl  + + N++     ga++tl+      + +  A+++v+ d+  
  KIR66087.1 294 L--PTCDAVVSEGGTHTILTAAALGVPQVLVPLV-ERPPNAATFCESGAGITLDAGGADPAAVGRAVDAVLGDERI 366
                 4..9999*************************96.8999********************************99865 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.6e-08   0.00016      73     142 ..     297     361 ..     289     383 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 4.6e-08
                      H-EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHC CS
  Glyco_tran_28_C  73 adLvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallela 142
                       d v+s +G+ ti+ ++alg+p +lvpl e        Na+ + + ga++ l+   ++p  +  a+++++
       KIR66087.1 297 CDAVVSEGGTHTILTAAALGVPQVLVPLVER-----PPNAATFCESGAGITLDAGGADPAAVGRAVDAVL 361
                      588**************************94.....5999999999999999998888888877777765 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.34   1.2e+03      84     106 ..     112     133 ..      69     143 .. 0.84
   2 !   17.3   0.3   1.3e-06    0.0048      25     132 ..     250     361 ..     237     363 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.34
                      SHHHHHHHHTT-EEEE-TGGGTT CS
  Glyco_trans_1_4  84 glkllEamaaglpvVatdvggia 106
                      ++++ +++a++ p V+ ++ gi+
       KIR66087.1 112 QIVVADSLAFAAPLVSAAL-GIP 133
                      6888899999999998888.654 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.3e-06
                      HHHH.....HHEEEEEES---...HHHHHHHTT-T.TEEEE---THHHHHHHH-SEEEE-----SHHHHHHHHTT-EEEE-TGG.GTTT--... CS
  Glyco_trans_1_4  25 pllr....kkdvrlvivGdgp.rpeeleelaagleerveftGfvedlaellaaadvfvaPsegfglkllEamaaglpvVatdvg.giaevv... 109
                      p+++    ++dv++v+ G+g  r ++l      l e+v+++G v   + +l  +d +v  seg   ++l a+a+g+p V  ++   ++++    
       KIR66087.1 250 PRILdalaRRDVEVVVTGSGIdR-DRLG----ALPETVRVAGDV-PADVVLPTCDAVV--SEGGTHTILTAAALGVPQVLVPLVeRPPNAAtfc 335
                      45552221456*******99744.4775....35589*******.99999*****999..5999***************998732333333334 PP

                      .TTSSEE--TT..-HHHHHHHHHHHH CS
  Glyco_trans_1_4 110 .gengllvppg..dpealaeailrLl 132
                         +g+ +++g  dp+a  +a+ ++l
       KIR66087.1 336 eSGAGITLDAGgaDPAAVGRAVDAVL 361
                      43455666555456777777766665 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   4.6e-05      0.17      11     102 ..      20     137 ..      16     155 .. 0.68
   2 ?    0.9   0.7      0.11   4.1e+02      11      28 ..     252     269 ..     137     285 .. 0.78
   3 ?    1.2   0.1     0.088   3.2e+02      11      35 ..     252     276 ..     248     297 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.6e-05
  Glyco_transf_4  11 LaraLarrGheVtvv.......tpgddgpleeev......................elvvrvprvplpllkrllrslaflrrlrrllkrekpDvv 76 
                     La a +++GheV+v        t  + g ++ ev                          r++   +++ +   +   +++ l r ++r++p +v
      KIR66087.1  20 LAWACRAAGHEVRVAghphlteTTLRTGLSPVEVggdgagrrrhgpavtqaglartSGDERHRLLDRRFAPMVDLAGEMAPGLVRFADRWQPQIV 114
                     77888999*******877777744445555555589999999999777777755532222233333444444445555568899*********** PP

  Glyco_transf_4  77 HahspaalgaallalrrrlgiplVlt 102
                      a s  a+ a l+ ++  lgipl  +
      KIR66087.1 115 VADS-LAFAAPLVSAA--LGIPLLRH 137
                     6666.55556666666..7***9866 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.11
  Glyco_transf_4  11 LaraLarrGheVtvvtpg 28 
                     +  aLarr +eV+v  +g
      KIR66087.1 252 ILDALARRDVEVVVTGSG 269
                     445677776666665444 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.088
  Glyco_transf_4  11 LaraLarrGheVtvvtpgddgplee 35 
                     +  aLarr +eV+v  +g d++   
      KIR66087.1 252 ILDALARRDVEVVVTGSGIDRDRLG 276
                     5679****99999987766655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3059.69
//
Query:       KIR66088.1  [L=289]
Description: 3-hydroxyisobutyrate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-36  126.2   1.4    1.9e-36  125.6   1.4    1.2  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    5.9e-15   55.6   0.2    1.3e-14   54.5   0.2    1.6  1  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
      4e-08   33.7   0.2      1e-07   32.4   0.2    1.7  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    8.4e-07   28.5   0.2    1.1e-06   28.1   0.2    1.2  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    2.9e-05   23.7   0.1    5.1e-05   22.9   0.1    1.4  1  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
    0.00011   22.1   0.7    0.00021   21.2   0.7    1.5  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
    0.00071   19.6   1.6     0.0044   17.0   0.5    2.3  2  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
      0.003   17.6   0.1     0.0053   16.8   0.1    1.4  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.016   14.9   0.2      0.027   14.1   0.2    1.4  1  ApbA            Ketopantoate reductase PanE/ApbA
      0.027   14.5   0.0      0.047   13.8   0.0    1.3  1  DpaA_N          Dipicolinate synthase subunit A N-terminal do
      0.066   13.5   0.3       0.22   11.8   0.3    2.0  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
       0.25   11.8   2.7         15    6.1   0.2    2.6  3  XdhC_C          XdhC Rossmann domain


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   1.4   1.2e-39   1.9e-36       2     158 .]       7     159 ..       6     159 .. 0.97

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 1.2e-39
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE-S---HHHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdeviegllealkkgdilidgstsspedt 97 
                    + ++G+G+MG+ ma+nl+ ag+ v v+nr+++k   ++ +ga++aes++++v+++dv+itm+ +g  v++vi + ++ lk+g+++++++t+s  d 
     KIR66088.1   7 VSVLGTGIMGAAMARNLVGAGHAVRVWNRSPQK---AAGTGATVAESPADAVRDADVIITMLYDGGTVRDVIGQAAPGLKAGALWLQTTTASLGDV 99 
                    789***************************765...67889******************************************************* PP

                    HHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEEEEEEE-E CS
  NAD_binding_2  98 relakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaigakvthviG 158
                      la+ ++e+ + f daPV G+ + Ae+G+L+++++G+ +  er++pvl+ai+a+v+ ++G
     KIR66088.1 100 AALAATAAEHSVAFYDAPVLGTRQPAEAGQLTVLAAGPHAGQERLAPVLDAIAARVV-WLG 159
                    *******************************************************99.877 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.2   8.6e-18   1.3e-14       1     117 [.     165     281 ..     165     285 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 8.6e-18
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnalenklpqrvl.srdfdpgFaldlmlKDlglalelareagaplpl 94 
                     G G+  Klv n  + +    a+E+l+la ++G+dp++++evi ++      l+ k    v   r  +  Fa+++  KD +l++++++++g++l +
      KIR66088.1 165 GDGTRLKLVANSWVLTVTHGAAEMLALAGALGVDPDRFFEVIGGGPLDMGYLHAKAD-LVRqGRLSPASFAVETAEKDARLIVAAGEDHGVRLDV 258
                     89********************************************99999999987.55515556678************************** PP

  NAD_binding_11  95 lalaeqlyaaaaaegggdaDhsa 117
                     +a+ ++ +++aaa+g+g++D+ a
      KIR66088.1 259 VAAGAERFRRAAAQGHGGKDMGA 281
                     ********************876 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.2   6.9e-11     1e-07       2      67 ..       7      63 ..       6      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 6.9e-11
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvl 67
                   + ++G+G mg+a+a++l+ ag   h ++v  +r+p+ka+ + ++    v + + ++a+++adv++ 
     KIR66088.1  7 VSVLGTGIMGAAMARNLVGAG---HAVRVW-NRSPQKAAGTGAT----VAE-SPADAVRDADVIIT 63
                   789******************...****76.******9887555....667.89**********95 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.2   7.6e-10   1.1e-06      35     159 ..       3     124 ..       1     140 [. 0.84

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 7.6e-10
                   TTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC.SHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GG CS
  2-Hacid_dh_C  35 sgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelv.sleellaesDivslhlpltpetrhlinaeelakmkkgailiNtaRGg 130
                   ++ tv ++G+G +G a+a+ l + g  v +++rs++k +    +g++++ s  ++++++D+++ +l      r++i++++   +k ga+ + t  ++
    KIR66088.1   3 EELTVSVLGTGIMGAAMARNLVGAGHAVRVWNRSPQKAA---GTGATVAeSPADAVRDADVIITMLYDGGTVRDVIGQAA-PGLKAGALWLQTTTAS 95 
                   5689******************************99554...556655449****************9999999999887.7789999999999999 PP

                   GB-HHHHHHHHHTTSCCEEEES--SSSSS CS
  2-Hacid_dh_C 131 lvdeeaLleaLksgkiagaalDvfeeepl 159
                   l d +aL++   ++ +a +   v+ + ++
    KIR66088.1  96 LGDVAALAATAAEHSVAFYDAPVLGTRQP 124
                   99999999999999988877666666555 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   3.4e-08   5.1e-05       4      88 ..       4      85 ..       1      92 [. 0.78

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3.4e-08
                TS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEE.HHHHHHT-SEEEE-S-HH.HHHHHHHHHTGGG--TT CS
        IlvN  4 gkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevlt.vaeavkkadvvmiliPDe.lqkevyeeeiepnlkeg 88
                + +++v+G G  G a a+nl  +g  v v +r+     +kA  +g +v++  a+av++adv+++++ D  + ++v+  + +p lk+g
  KIR66088.1  4 ELTVSVLGTGIMGAAMARNLVGAGHAVRVWNRSP----QKAAGTGATVAEsPADAVRDADVIITMLYDGgTVRDVI-GQAAPGLKAG 85
                679**********************999877655....589999999875269*********99998861344454.5556666665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.7   1.4e-07   0.00021       1      49 [.       6      54 ..       6      75 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.4e-07
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCC CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalekiekslekl 49
                +v v+G+G+mGa +a  ++ ag+ V++ ++s+++++   +++++s + +
  KIR66088.1  6 TVSVLGTGIMGAAMARNLVGAGHAVRVWNRSPQKAAGTGATVAESPADA 54
                699*****************************99998888887765555 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.5   2.9e-06    0.0044       2      35 ..       7      40 ..       6      49 .. 0.92
   2 ?    0.8   0.0      0.29   4.4e+02     128     153 ..     226     251 ..     216     254 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.9e-06
                    EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHH CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrlwvreeeli 35
                    ++vlG+G  G a+A+ l  +gh vr+w r+++ +
      KIR66088.1  7 VSVLGTGIMGAAMARNLVGAGHAVRVWNRSPQKA 40
                    89***************************99765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.29
                     EEEESS--HHHHHTT--EEEEEEES- CS
  NAD_Gly3P_dh_N 128 avlsGpslAeEvakgkptavviaskd 153
                     + ls +s+A E a+++   +v+a +d
      KIR66088.1 226 GRLSPASFAVETAEKDARLIVAAGED 251
                     56899**********99999998876 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   3.6e-06    0.0053      12      52 ..       4      43 ..       1      66 [. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.6e-06
                  T-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHH CS
  Shikimate_DH 12 ekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakel 52
                  e +v ++G+G m+  +a++L+ +g   v v NR+ ++a+  
    KIR66088.1  4 ELTVSVLGTGIMGAAMARNLVGAGHA-VRVWNRSPQKAAGT 43
                  56899******************998.**********9765 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   1.8e-05     0.027       2      32 ..       8      39 ..       7      63 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-05
                EEES-SHHHHHHHHHHHHHTHCEEEE-SCH.H CS
        ApbA  2 ailGaGaiGsllaakLakagadvtlilrsr.r 32
                 +lG+G +G  +a +L  ag+ v +++rs+ +
  KIR66088.1  8 SVLGTGIMGAAMARNLVGAGHAVRVWNRSPqK 39
                69**************99***********922 PP

>> DpaA_N  Dipicolinate synthase subunit A N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.1e-05     0.047      13      57 ..      18      63 ..      16      83 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.1e-05
                HHHHHHHHTT-EEEEES-.TSSS-BTTEEEE-GGGS-GGG-SEEE- CS
      DpaA_N 13 ylarkLaekgakvslygl.eleekiegvekaesleealedadviil 57
                ++ar L   g+ v+++   +++   +g++ aes ++a++dadvii 
  KIR66088.1 18 AMARNLVGAGHAVRVWNRsPQKAAGTGATVAESPADAVRDADVIIT 63
                699*************999999999*******************96 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   0.00015      0.22       1      38 [.       9      47 ..       9      70 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00015
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS.SSGGG-EE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr.lGGraasy 38
                   ++G+G+ G+++A+ L  ag+ v ++ ++++   G  a++
     KIR66088.1  9 VLGTGIMGAAMARNLVGAGHAVRVWNRSPQkAAGTGATV 47
                   89***********************99876455666555 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2      0.01        15       3      53 ..       9      67 ..       7     126 .. 0.71
   2 ?    5.7   0.0     0.013        20       8      65 ..     139     195 ..     130     209 .. 0.76
   3 ?   -2.7   0.1       5.2   7.7e+03       6      31 ..     238     263 ..     234     275 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.01
                EE--STTHHHHHHHHHHHTEEEEEEES-GGGG.....-GGG-TT-SE........-EEEE--S- CS
      XdhC_C  3 ifGaghvaqalarlaaalgfrvtvvdpreefa.....tkerfpeade........tavvvlthd 53
                ++G g +++a+ar +  +g  v v +  ++ a     t+++     +        ++++ +  d
  KIR66088.1  9 VLGTGIMGAAMARNLVGAGHAVRVWNRSPQKAagtgaTVAE-----SpadavrdaDVIITMLYD 67
                89*************************99766465553333.....233446755444444443 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.013
                 TTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE-EEEE--S-HHHHHHHHHHHS CS
      XdhC_C   8 hvaqalarlaaalgfrvtvvdpreefatkerfpeadetavvvlthdhklDaealeaal 65 
                    + la+++ a+  rv+++ ++ +  + +r++ +++++v+ +th+   +  al+ al
  KIR66088.1 139 AGQERLAPVLDAIAARVVWLGDDGARGDGTRLKLVANSWVLTVTHGA-AEMLALAGAL 195
                 445789******************9999999999989********95.4555566555 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.2
                 -STTHHHHHHHHHHHTEEEEEEES-G CS
      XdhC_C   6 aghvaqalarlaaalgfrvtvvdpre 31 
                 a+++a+ +++ ++  g+r+ vv + +
  KIR66088.1 238 AEKDARLIVAAGEDHGVRLDVVAAGA 263
                 55667777777777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1940.29
//
Query:       KIR66089.1  [L=114]
Description: UBP-type zinc finger protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-12   45.8   5.7    7.2e-12   45.5   5.7    1.1  1  zf-UBP    Zn-finger in ubiquitin-hydrolases and other protein


Domain annotation for each model (and alignments):
>> zf-UBP  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   5.7     4e-16   7.2e-12       1      58 [.      16      79 ..      16      83 .. 0.94

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 4e-16
                -TTTH--.SSEEE....ETTT--EEE-TTTT.-HHHHHHHHH---EEEETTT--..EEETTTTEE CS
      zf-UBP  1 CseCnsenknlWl....CLkCghvgCgrksn.ghalkHyeetrHplavdlstls..vycyscdde 58
                C eC s+ + +W+    C  CghvgC+++s  +ha++H+ +t+Hp++ +++ ++  +++ys+d++
  KIR66089.1 16 CVECASS-GGWWFhlrrCAACGHVGCCDSSPsQHATAHAAATGHPVVRSFEPGEswFWDYSEDQF 79
                99***98.999999**************9988**********************989****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.31s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 744.91
//
Query:       KIR66090.1  [L=241]
Description: alpha/beta hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-17   65.2  14.3    1.5e-17   64.9  14.3    1.0  1  Abhydrolase_6  Alpha/beta hydrolase family
      2e-08   33.8   0.1    3.7e-06   26.4   0.0    2.1  2  Hydrolase_4    Serine aminopeptidase, S33
    5.2e-06   26.3   0.4    7.6e-06   25.8   0.4    1.2  1  Abhydrolase_5  Alpha/beta hydrolase family
    7.8e-06   25.7   1.1     0.0026   17.4   0.2    2.9  2  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
       0.01   15.7   0.0      0.014   15.3   0.0    1.4  1  Ser_hydrolase  Serine hydrolase
       0.12   12.5   0.1       0.23   11.5   0.1    1.6  1  Thioesterase   Thioesterase domain
       0.17   11.6   0.3       0.34   10.6   0.3    1.4  1  PGAP1          PGAP1-like protein


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9  14.3   5.9e-21   1.5e-17       1     219 [.      13     232 ..      13     233 .. 0.70

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 5.9e-21
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC...EE.EEES CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldledladlaalldelaagggpvvlvGHSlGGalalaaapla.lvvg.vlld 94 
                    v+l+HGa++ + sW  + +a+ll +g+  +a+  p  G        +++ ++l+a+l+++   +gpvvlvGHS+GG++ + + ++a +v + v++ 
     KIR66090.1  13 VVLVHGAFAESASW-DGVIAELLDGGYPAVAVANPLRG------VRHDA-DHLRAVLTGI---DGPVVLVGHSYGGMVISNVPAGAaDVTAlVYVG 97 
                    8*************.4688999****999******888......55544.88999*****...6*****************66666344448**** PP

                    -..----TTT..S----TTHHHHHH.........TT-C.....CCCHCCHS-HSCCCCHHHC.CCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGC CS
  Abhydrolase_6  95 ppptalpagl..laaalelllalla.........llrl.....lawlsreplprlfladeda.daawrarlarlaallaglgllpaaawadlpvpl 173
                    +   ++pa+   +  a    + +++         +  l     + + + + + ++f ad +a +aa+ a  +r+   +a +++   +aw  lp+++
     KIR66090.1  98 A---FAPASGesA--ADLAGRFPGSslgetlaavP--LpdggtDLYIRQDRYHHQFAADSPAqRAAVMAVTQRPITEAALNEPSGEPAWQSLPSWF 186
                    *...777777452..33333322221122222221..02233333333223334777766655777777777777777777777788********* PP

                    EEECTT-CHHHHCHHCCCH..STTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 174 lvlggeDplvprllerlla..qagarlpvvlpgaGHlphleepdevae 219
                    l  g+eD  +p  + r++a  + ++++ v+lpg++H + + e++++++
     KIR66090.1 187 LF-GSEDLNIPVAAHRFMAerAGSRQT-VELPGGSHTVAIPEAAALVD 232
                    66.999995554455777776677888.********999988888876 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0032       8.3       4      36 ..      10      42 ..       7      49 .. 0.89
   2 !   26.4   0.0   1.4e-09   3.7e-06      74     234 ..      64     222 ..      45     224 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0032
  Hydrolase_4  4 kavvvlvHGlaehsgryaelaeaLaaqGfavya 36
                 + +vvlvHG    s   + ++++L + G+  +a
   KIR66090.1 10 RPTVVLVHGAFAESASWDGVIAELLDGGYPAVA 42
                 789************************997766 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 1.4e-09
  Hydrolase_4  74 pelplfllGhSmGGliallyllrypdkvaglilsaPalkikaklk.appllklllkllgkllpklqvsnnlkadslsrdpevvaayeadplv.hgkit 169
                   + p++l+GhS GG++  ++ +  +d v++l+ ++++     + + a  + ++    lg++l  +++++   +d   r+ +   +++ad+   + ++ 
   KIR66090.1  64 IDGPVVLVGHSYGGMVISNVPAGAAD-VTALVYVGAFAPASGE-SaADLAGRFPGSSLGETLAAVPLPD-GGTDLYIRQDRYHHQFAADSPAqRAAVM 158
                  4569************9999999888.********98655544.3366666667777777777777755.55555555555555566665555999** PP

  Hydrolase_4 170 vrlllelldamkrleeraakit.lPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHel 234
                  + + + +++a+ +  +  ++++ lP ++l G++D  ++ +a+r ++er+gs   +    pg+ H +
   KIR66090.1 159 AVTQRPITEAALNEPSGEPAWQsLPSWFLFGSEDLNIPVAAHRFMAERAGS--RQTVELPGGSHTV 222
                  *********************99***************************7..7778889999875 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.4     3e-09   7.6e-06       2      93 ..      13     103 ..      12     113 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 3e-09
  Abhydrolase_5   2 lifYpGakveaesYaelaeklaksGyevvlvklPlnlavlgknkaeeiikeapklekfvvgGhslGGvvasrfaaeeekiegvvflasY.Pek 93 
                    +++  Ga+ e++s+  + ++l + Gy  v v  Pl       ++ + ++   ++    v+ Ghs GG+v+s++ a    + ++v+++++ P+ 
     KIR66090.1  13 VVLVHGAFAESASWDGVIAELLDGGYPAVAVANPLRGVRHDADHLRAVLTGIDG--PVVLVGHSYGGMVISNVPAGAADVTALVYVGAFaPAS 103
                    78999*******************************99999*******998886..5899**************************9983444 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0038       9.8       1      29 [.      11      37 ..      11      46 .. 0.86
   2 !   17.4   0.2     1e-06    0.0026      65     120 ..      58     112 ..      46     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0038
                   SEEEEE-STTTCGGGGTTGHHHHHHHHTT CS
  Abhydrolase_1  1 pvlvilhGlpgssdvwaerglapaLakdg 29
                   p++v++hG  ++s +w +  ++  L + g
     KIR66090.1 11 PTVVLVHGAFAESASWDG--VIAELLDGG 37
                   78****************..998887755 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1e-06
                    HHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHHHHHH CS
  Abhydrolase_1  65 rildalgddkltlvGhSmGGmialayaaeyperVkalvllgaidpaaslieaqrqq 120
                    r++    d++++lvGhS+GGm+ +++ a + + V alv +ga +pa+  + a++  
     KIR66090.1  58 RAVLTGIDGPVVLVGHSYGGMVISNVPAGAAD-VTALVYVGAFAPASGESAADLAG 112
                    555555677788****************9888.99999999988888777777655 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   5.4e-06     0.014      43     101 ..      54     109 ..      14     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.4e-06
                    HHHHHHHHHC-STTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--SGGS..TT.GG CS
  Ser_hydrolase  43 vaaleaaveaaeekvvlvAHSlgclavlhaaelqlakkvagalLVapadveeeaaklae 101
                    +++l+a ++ + ++vvlv HS g +++ ++   + a+ v + + V  ++++ + + +a 
     KIR66090.1  54 ADHLRAVLTGIDGPVVLVGHSYGGMVISNVP--AGAADVTALVYVGAFAPA-SGESAAD 109
                    589999*********************9987..899999999999998884.4444443 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     9e-05      0.23      65      79 ..      65      79 ..      11      81 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9e-05
                  SSSEEEEEETHHHHH CS
  Thioesterase 65 egPyalfGhSlGgll 79
                  +gP++l+GhS+Gg++
    KIR66090.1 65 DGPVVLVGHSYGGMV 79
                  79************8 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   0.00013      0.34      93     104 ..      68      79 ..      64      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
       PGAP1  93 viliGHSmGGiv 104
                 v+l+GHS+GG+v
  KIR66090.1  68 VVLVGHSYGGMV 79 
                 9**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 1901.26
//
Query:       KIR66091.1  [L=314]
Description: hypothetical protein TK50_12715 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-14   54.1   0.0    4.2e-14   52.7   0.0    1.7  2  Acetyltransf_9  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
        1.8    8.7   8.9        0.5   10.5   1.0    3.1  3  Acetyltransf_6  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   4.7e-18   4.2e-14       2     127 ..       7     129 ..       6     130 .. 0.93
   2 ?   -1.9   0.0      0.38   3.4e+03      41      60 ..     197     216 ..     165     223 .. 0.65

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 4.7e-18
                     EEEE-GGGHHHHHHHHHHHTT----H..HHHHHHHHHHTTSEEEEEEETTEEEEEEEEEEEEEEE.TTEEEEEEEEEEEEE-CCGTTS-HHHHHH CS
  Acetyltransf_9   2 irelteedldevlellkyaFqdeespleeireyfrklleesrvlgaedngelvgqlallplelnv.pGktlkaagvtgVavapehrgrgvlskLl 95 
                     +r++t +d++  ++ +++aF d +  +  ++    ++    r+++a + g++v+ + +lp++++   G    ++gv+ Va+    rgrg++++Ll
      KIR66091.1   7 YRPATAADVPSLHATWAEAFDDAHVVR--LWSG--DPGRLPRTFVAVQAGTVVAAVYYLPRRIRDaAGGVDLVGGVANVATRVRARGRGHVRRLL 97 
                     8***********************994..6655..5555567**********************98889999*********************** PP

                     HHHHHHHHHTT--EEEE--SSHHHHHTTT-EE CS
  Acetyltransf_9  96 araleemreegqplsllfPssipiYrrfGyei 127
                     + a++ m+++g   sllf   +++Y + Gy++
      KIR66091.1  98 DLAVTAMAADGCAWSLLFTGTPGVYASSGYRP 129
                     *******************99*********86 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.38
                     TSEEEEEEETTEEEEEEEEE CS
  Acetyltransf_9  41 esrvlgaedngelvgqlall 60 
                     + + l+a+  g+++g la++
      KIR66091.1 197 PTELLVARHRGRVAGYLAAH 216
                     35678888888888888776 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   1.4      0.05   4.5e+02      68      89 ..      40      61 ..       6     118 .. 0.66
   2 ?    0.0   0.1     0.096   8.6e+02      52      69 ..      91     108 ..      63     145 .. 0.63
   3 ?   10.5   1.0   5.6e-05       0.5      72     130 ..     199     255 ..     161     259 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.05
  Acetyltransf_6 68 rgalrlyvlrldgrpvAvalgl 89
                    +   r +v+   g++vA+++ l
      KIR66091.1 40 GRLPRTFVAVQAGTVVAAVYYL 61
                    3334455555677777777654 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.096
  Acetyltransf_6  52 pltraflrdllaalaarg 69 
                      ++r++l  ++ a+aa+g
      KIR66091.1  91 GHVRRLLDLAVTAMAADG 108
                     344444444444444433 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 5.6e-05
  Acetyltransf_6  72 rlyvlrldgrpvAvalglrsgdrlyywlggydpelaklspgllllweliedaaeeGlrr 130
                     +l+v+r+ gr++++++++++ +r+    ++  p+ ++  p   l++ ++++aa++++r+
      KIR66091.1 199 ELLVARHRGRVAGYLAAHWAPGRVRVVETAALPDRPDALP--ALFRAVARAAAARDVRH 255
                     799********************************99888..9*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2210.62
//
Query:       KIR66092.1  [L=279]
Description: membrane protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-71  240.0   0.0    2.7e-71  239.7   0.0    1.1  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.7   0.0   1.5e-75   2.7e-71       2     216 ..      71     275 ..      70     277 .. 0.96

  Alignments for each domain:
  == domain 1  score: 239.7 bits;  conditional E-value: 1.5e-75
                    EEEEEEE--SHHHHHTTT.-SS-EEEEEEGGGE.EETTE..EE-TTSSSS-EE......EEEEEEEESS-B--T--HHHHHTTEEEEEEEEEEE-S CS
  FAA_hydrolase   2 ivcdglnyaehvreagkaaeeppdrhiplepvfflkrasslvgpgdpirrPagsekldyEvELavvigkplrevlsveeAedaiaGytllnDvsaR 97 
                    ++c+g+nya+h++e g    +pp+     +p++f+k+++++vgp d++++P+gs++ d+EvELavvig+p+r + s+++A  ++aGy+++nDvs R
     KIR66092.1  71 VLCIGQNYAAHAAESG---VAPPE-----RPILFHKSPNTVVGPYDRVLIPRGSTRTDWEVELAVVIGRPARYLDSPADALAHVAGYAVANDVSER 158
                    78************98...67888.....778******************************************889******************* PP

                    BGGG---.HHHHHHTGGGEEEEEE-B--B-.STT---SS-EEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHH-B-TT-EEEEEES.......S- CS
  FAA_hydrolase  98 dlqaeekaplgwflgksfdtftpiGpwivtpdeledpedlelrlrvngeevqdsntkdmifspaeliahlsagltLepGdliltGTpsgvgaeees 193
                    d q+++    +w++gks++tf p+Gpw+vtpde++dp++l+lr +vng+++qds+t+dmif++a+li hls+++ LepGdl+ tGTp+gv   + +
     KIR66092.1 159 DYQFADP-GGQWAKGKSCETFNPLGPWLVTPDEVADPQALRLRSWVNGAPRQDSRTADMIFDVAYLIWHLSQFTVLEPGDLVNTGTPQGVA-LSGR 252
                    ******9.77*******************************************************************************96.4678 PP

                    -EE--TT-EEEEEETTTEEEEEE CS
  FAA_hydrolase 194 lkflkdgDeveveieglGelrnr 216
                     ++l++gD++e+ei+glG++r+ 
     KIR66092.1 253 FPYLAAGDVMEMEIDGLGRQRTA 275
                    9******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       154  (0.00858944); expected 358.6 (0.02)
Passed bias filter:                      146  (0.00814323); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2062.28
//
Query:       KIR66093.1  [L=341]
Description: 3-phosphoglycerate dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-45  155.2   0.0    1.9e-45  154.4   0.0    1.4  2  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
      7e-11   41.9   0.0    9.2e-11   41.5   0.0    1.1  1  2-Hacid_dh    D-isomer specific 2-hydroxyacid dehydrogenase, 


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0      0.82   7.4e+03      79      96 ..      47      64 ..      37      66 .. 0.72
   2 !  154.4   0.0   2.1e-49   1.9e-45       2     178 .]     125     301 ..     124     301 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.82
                  TCEECSHHHHHHH-SEEE CS
  2-Hacid_dh_C 79 gvelvsleellaesDivs 96
                   ++ v+l  +la++++++
    KIR66093.1 47 ALTGVDLASVLARAEVLV 64
                  456678889999998887 PP

  == domain 2  score: 154.4 bits;  conditional E-value: 2.1e-49
                   HHHHHHHTTHHHHHHHHHTT.CC.HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEE CS
  2-Hacid_dh_C   2 alllallrrlaeadeevreg.ew.ksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivs 96 
                   ++ lall +++++d+++++g ew ++e+a + +e+ g  +G++G+ r G+a  ++++a+g++v + d++ ++ + +++lg++lv l+ella s iv 
    KIR66093.1 125 TFTLALLHQTPRFDHALHAGtEWhRAEQAPPRHEILGCPIGVVGASRTGRAYLELVRALGAEVSVCDPTLTPAD-AARLGARLVGLDELLAGSRIVA 220
                   6789*************9997888889999999**************************************998.999******************* PP

                   E-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  97 lhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   lh+p  petrhl++a+ela++++ga l+NtaR  lvde+aL++ L +g+i  aalDvf+eeplp+ +pl+ lpnv+ltPH a
    KIR66093.1 221 LHAPTLPETRHLLGARELALLPDGAGLVNTARSWLVDEAALVAELTRGRID-AALDVFDEEPLPTGHPLRALPNVLLTPHQA 301
                   **************************************************9.99**************************87 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0     1e-14   9.2e-11      27     133 ..      47     332 ..      26     333 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1e-14
                 CSSHHHCHHHHTTESEEEE-TTS.-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH...................... CS
                 xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................... RF
  2-Hacid_dh  27 ellteellekakdadalivrsnt.kvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt...................... 102
                 +l+  +l++ +++a++l++     +++a++l+++p L+++a+ g+ v  +  + + +rG++Vt++ +  ++svAE++                      
  KIR66093.1  47 ALTGVDLASVLARAEVLVTSWGVpRLDAALLDRAPALRLVAHTGASVKPFVTAELFARGVTVTQAGQGMARSVAEVAltftlallhqtprfdhalhagt 145
                 6677789999999999998655449************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  KIR66093.1 146 ewhraeqapprheilgcpigvvgasrtgraylelvralgaevsvcdptltpadaarlgarlvgldellagsrivalhaptlpetrhllgarelallpdg 244
                 *************************************************************************************************** PP

                 .........................................................T-BHHHHHHHHHHHHHHHHHHHTTCCGTTBC CS
                 .........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 .........................................................aaTeeaqeniaeeaaenlvaflkgespanav 133
                                                                          a T + +++ +e++++++v++++g+++a+av
  KIR66093.1 245 aglvntarswlvdeaalvaeltrgridaaldvfdeeplptghplralpnvlltphqaAGTVQGRRRQGEIVVDEIVRYASGRPLAHAV 332
                 ********************************************************999*************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      166  (0.00925874); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2577.54
//
Query:       KIR66094.1  [L=343]
Description: epimerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00027   20.5   0.0    0.00041   19.9   0.0    1.2  1  Epimerase       NAD dependent epimerase/dehydratase family
    0.00058   19.5   0.0    0.00089   18.9   0.0    1.3  1  NmrA            NmrA-like family
  ------ inclusion threshold ------
      0.014   15.3   0.1       0.02   14.8   0.1    1.3  1  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   6.8e-08   0.00041       2     169 ..      34     201 ..      33     205 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 6.8e-08
                 EEETTTSHHHHHHHHHHHHCT........SEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekg........yevigldrlssasntarledl..elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfiek 90 
                 +V+Ga G +G  l++    +g         +v +++r s+++  a+l+    e v  dl+ + +l+ l +  ++d+v+ ++a  g   +++ p   +  
  KIR66094.1  34 VVLGAGGKMGPSLCRLAR-RGldaagrtgDRVYAVSRWSDRESAAALAADgvEPVAFDLLGDGDLAGLPD--AADVVFMVGAKFG---TASAPYLAWVV 126
                 799999999999997544.451222244333555555544444444444488******************..9*******77444...44468888999 PP

                 HTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
   Epimerase  91 nlqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrl 169
                 n+++   +   ar++ + r+  +s+  vY+ ++   +   ++t+p+ p   Ya++ l  e++   +aa+ g+++ +lrl
  KIR66094.1 127 NAVLPAAV---ARRYPAARIAAFSTGNVYPMVPVG-TGGCVETDPTGPLGDYAMSCLGREQVFAHAAATRGTPVAVLRL 201
                 99999765...788889999**********99994.5666667899*********999999999999999******997 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.5e-07   0.00089       2      75 ..      34     114 ..      33     156 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.5e-07
                 EESSTTSHHHHHHHHHHHH.......HT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG CS
        NmrA   2 lviGaTGrqGksvvrallk.......aghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy 75 
                 +v+Ga G++G s+ r + +        g +v a+ R +++e a++l++ Gve v+ dl  +  l+ + + +dvvf+v + +
  KIR66094.1  34 VVLGAGGKMGPSLCRLARRgldaagrTGDRVYAVSRWSDRESAAALAADGVEPVAFDLLGDGDLAGLPDAADVVFMVGAKF 114
                 79*************9988888989899***********************************************998755 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   3.3e-06      0.02       1     105 [.      37     155 ..      37     192 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.3e-06
                     TTTSHHHHHHHHHHHHC-.......T-EEEEEET..THHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHH.....HHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.......ghevtalvR..npeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeeg.....akni 81 
                     GA Gk G  l++ + +rg       g +v a+ R  + e++a+l+ ++g+e v  d++   dla   + ad+V++ +++ g+ +       ++++
      KIR66094.1  37 GAGGKMGPSLCRLA-RRGldaagrtGDRVYAVSRwsDRESAAALA-ADGVEPVAFDLLGDGDLAGLPDAADVVFMVGAKFGTASAPylawvVNAV 129
                     56666666655533.222222235578999999944456666675.79*****************************998884433556654444 PP

                     H..HHHHHCT--EEEEEEETTTTSGC CS
  NAD_binding_10  82 v..daakeagvkRfvlvsaigvgdev 105
                     +  ++a++    R+   s+ +v+  v
      KIR66094.1 130 LpaAVARRYPAARIAAFSTGNVYPMV 155
                     41133444456677777766666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2361.85
//
Query:       KIR66095.1  [L=297]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-20   71.4  11.0    7.8e-20   71.4  11.0    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.067   13.1   0.1      0.067   13.1   0.1    3.0  3  DUF4389       Domain of unknown function (DUF4389)
        9.8    6.3   8.1        1.1    9.4   1.9    2.2  2  Popeye        Popeye protein conserved region


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   4.6     0.041   2.5e+02      99     179 ..      36     120 ..      20     124 .. 0.62
   2 !   71.4  11.0   1.3e-23   7.8e-20       7     182 ..     114     289 ..     108     292 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.041
  BPD_transp_1  99 rkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlvadilqrll 179
                   r+v+l  a  +++  +   ++++l+ a+++ef g      +ll  +i+   y+  +          n++++ +v +v++l+l+a++ +++ 
    KIR66095.1  36 RYVLLAVASVVTLFPFYAMVVLSLKPAAAVEFPG------SLLPWPIEFDAYATVLdsrdilrwllNTTIYSVVSVVAVLLLAAMAGYAFA 120
                   3344444444444444445555577777777777......677777777777766677777777776666666666666666666666555 PP

  == domain 2  score: 71.4 bits;  conditional E-value: 1.3e-23
  BPD_transp_1   7 laa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrk 100
                   +a+    ++++++++ + + + ++ ++P+ v +i+ +   +++ ++g   +++ ++l + a + +++++r++++ lp++l eaa+++Gas+w++f++
    KIR66095.1 114 MAGyafAKKRFPGRETMFWSFLAMVMVPYHVTLIPTF---ILIAKVGGVDTYWGLILPTLANAQAVFLMRQFIQGLPDELFEAAKIDGASEWRMFVR 207
                   4444444999999999999999999******777755...46799**************************************************** PP

  BPD_transp_1 101 vvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldpr 182
                   +vlP+ +p ++t+ +++f + +++ ++++++g+++ + tl++ + + +  +  +n++++  v+a++++ +++ + qr++   
    KIR66095.1 208 IVLPLCKPILATLGVFVFLWHWNDLLWPLIIGQSGDMRTLTVGIASLQKEQVPLNVMLAGSVVAFVPIFAAYLVGQRYFTEG 289
                   ********************************88776666666655555555557788888888888888888888887655 PP

>> DUF4389  Domain of unknown function (DUF4389)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.1e-05     0.067      16      67 ..      34      85 ..      31      89 .. 0.92
   2 ?    0.2   0.4      0.12   7.3e+02      11      32 ..      93     114 ..      90     126 .. 0.59
   3 ?   -3.0   0.7       1.2     7e+03      16      35 ..     208     227 ..     203     229 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
     DUF4389 16 ivlslaslvlwvvvvvqflivLvtgrpnepLrdfgksllrYiarilrfltln 67
                ++ +++  v+ vv+++ f +++v+  ++++ ++f  sll +  ++ +++t +
  KIR66095.1 34 VLRYVLLAVASVVTLFPFYAMVVLSLKPAAAVEFPGSLLPWPIEFDAYATVL 85
                566789999****************************************986 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.12
     DUF4389  11 mllfaivlslaslvlwvvvvvq 32 
                 +ll   ++s++s+v+++++   
  KIR66095.1  93 WLLNTTIYSVVSVVAVLLLAAM 114
                 4555556666666666665544 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.2
     DUF4389  16 ivlslaslvlwvvvvvqfli 35 
                 ivl l + +l+ + v++fl+
  KIR66095.1 208 IVLPLCKPILATLGVFVFLW 227
                 66666666777777777765 PP

>> Popeye  Popeye protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.9   0.00019       1.1      18      71 ..      94     147 ..      89     154 .. 0.90
   2 ?   -0.4   0.5       0.2   1.2e+03      32      53 ..     217     237 ..     205     240 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00019
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Popeye  18 lapsgvlgllvlrsllvlGflllalwawlvvCaldiflWnlllvlinlaqllyl 71 
                 l  +++++++ + ++l+l+ +   ++a   ++  ++++W++l +++   +++ +
  KIR66095.1  94 LLNTTIYSVVSVVAVLLLAAMAGYAFAKKRFPGRETMFWSFLAMVMVPYHVTLI 147
                 66778899**************************************99998765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.2
                 xxxxxxxxxxxxxxxxxxxxxx RF
      Popeye  32 llvlGflllalwawlvvCaldi 53 
                 l +lG++ + lw+w+++ ++ i
  KIR66095.1 217 LATLGVF-VFLWHWNDLLWPLI 237
                 4556655.569***99887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2217.00
//
Query:       KIR66096.1  [L=300]
Description: sugar ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-18   67.2  14.6    1.5e-18   67.2  14.6    1.9  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.41   10.7   0.2       0.41   10.7   0.2    3.8  4  DUF997        Protein of unknown function (DUF997)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   2.2      0.13   1.1e+03     102     126 ..      28      52 ..      17     108 .. 0.54
   2 !   67.2  14.6   1.6e-22   1.5e-18       6     178 ..     100     294 ..      93     296 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.13
  BPD_transp_1 102 vlPnalppiitglilafggllggav 126
                   vlP+ l  ++  ++ a++gl+ g++
    KIR66096.1  28 VLPAFLLFLAFRFGPAIAGLVLGFM 52 
                   5566666666666666666655554 PP

  == domain 2  score: 67.2 bits;  conditional E-value: 1.6e-22
  BPD_transp_1   6 ilaa..lnrnkkldkllrpliivllslPsfvlaillvlvf..................vilsilghlilp.viillllsaapyvrlirraalrslpk 81 
                   + +a  ++r++++  l+r +++++  +  +++a ++ +vf                  ++l +  +l+lp +++++++s ++y +li+ a l+ lp+
    KIR66096.1 100 VGLAllVRRGFRGVGLFRSVFFLPVVTSLVLVATIFSWVFssdgpwsrilgwvglpddSWLAS-STLVLPaLALVGVWSHFGYGMLIVLARLQDLPR 195
                   44446688***********************************************88666644.45666669************************* PP

  BPD_transp_1  82 dlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG..lgtllleailgydyseisnggvlalviavlllnlvadilq 176
                   +++eaa+++Ga++wq+fr +vlP+++p+++ +l++  ++++  + l++ ++++++   +++l+ a+  + + +   g++ a+++a+++++lv+ ++q
    KIR66096.1 196 EQEEAALTDGAGPWQRFRWIVLPQLKPVLFFLLVIETTASFQVFDLVYAMTGGGParASYTLVMALYDQGFKYFDLGYASAIGVALFVMTLVVALIQ 292
                   ***********************************************999977778988888888888888877799*****************999 PP

  BPD_transp_1 177 rl 178
                   rl
    KIR66096.1 293 RL 294
                   86 PP

>> DUF997  Protein of unknown function (DUF997)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   4.6e-05      0.41       2      28 ..      17      43 ..      16      52 .. 0.90
   2 ?   -1.8   0.0      0.36   3.2e+03      52      70 ..      95     113 ..      85     115 .. 0.71
   3 ?    5.6   3.8    0.0017        16      11      60 ..     128     176 ..     116     182 .. 0.70
   4 ?   -1.4   0.4      0.28   2.5e+03      47      64 ..     275     292 ..     273     294 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.6e-05
      DUF997  2 ankEalltllltllyflwwllfaYglg 28
                a++Ea+++ll +l  fl++l+f +g++
  KIR66096.1 17 ARREARWGLLFVLPAFLLFLAFRFGPA 43
                89**********************986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.36
      DUF997  52 pilfivlvillvkfvFkdi 70 
                 ++ + v + llv+  F+ +
  KIR66096.1  95 TVAASVGLALLVRRGFRGV 113
                 4667778888899888765 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0017
      DUF997  11 lltllyflwwllfaYglgskeveey.yilglP..lWfflscillpilfivlvi 60 
                 l+++++++ w++    +++++ + + + +glP   W+  s+++lp l++v v+
  KIR66096.1 128 LVLVATIFSWVF----SSDGPWSRIlGWVGLPddSWLASSTLVLPALALVGVW 176
                 233333333332....3335556667******777***************999 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.28
      DUF997  47 scillpilfivlvillvk 64 
                 s i++ +++++lv++l++
  KIR66096.1 275 SAIGVALFVMTLVVALIQ 292
                 677777777888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2074.80
//
Query:       KIR66097.1  [L=411]
Description: hypothetical protein TK50_12750 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-33  117.6  13.1    1.5e-33  117.1  13.1    1.1  1  SBP_bac_1  Bacterial extracellular solute-binding protein
    1.3e-28  100.7   9.2    1.7e-28  100.3   9.2    1.1  1  SBP_bac_8  Bacterial extracellular solute-binding protein
     0.0025   17.3   0.1       0.18   11.1   0.1    2.3  2  SBP_bac_6  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1  13.1   2.4e-37   1.5e-33       3     313 ..      48     329 ..      46     331 .. 0.87

  Alignments for each domain:
  == domain 1  score: 117.1 bits;  conditional E-value: 2.4e-37
                 SHHHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHH CS
   SBP_bac_1   3 sltegaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpki 101
                 +++    +++ v +af+++hp+++V++e  ++    + lt+aia+G+gp Dv++  +d+++++  ++  +p+d+y+ a+++             + +++
  KIR66097.1  48 THKG--FWDKQV-AAFKADHPDVDVKVEIFPWAKREESLTAAIAGGKGP-DVVYLIPDQLGKF--QKMIEPVDDYLPADAKAD-----------YRENV 129
                 5667..788888.************************************.*****999**999..678***********8766...........44444 PP

                 HCE.EE...ES.EEEEE.EEEEEEETTTHHCTTGGG.SHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT..HHCSH CS
   SBP_bac_1 102 lds.kv...ly.vPlya.argliYNkdlfekagldp.pwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgg..gldnp 191
                 +++ +        Pl + +++l+ N ++f+ agl++ p+tW +l+++a klk+kg       ++++ s t+++ +++l++++gg+vf++dg   +++ p
  KIR66097.1 130 RTAvTLdgkMLgAPLLTsSNPLMCNAKVFAAAGLTEyPKTWADLLALAPKLKAKGFDA--TNYYADPSATLNQSFYPLLWQAGGDVFTADGTsvAFAGP 226
                 444333556777****77************************************9988..9999*********************************** PP

                 HHHSHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECE.EBETTTTSEEEEEEE. CS
   SBP_bac_1 192 egvtaatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvapl.Pagkggkpgilgayg. 288
                 egv+a+t+l+ l++ ++++k+l    ++ ++ + a++ ++          +w+          v++++ +   ke++ ++p+   +k  ++   g+ g 
  KIR66097.1 227 EGVKALTFLKQLVDGGYVQKDLITSIPAFEQTNVAKNKVA---------CTWQ---------HVPADVEQFWGKENIKIFPPlSDVKSVGY---GTVGs 304
                 *************999999999999999999999988887.........6777.........67777777777777777775244444444...55555 PP

                 EEEBTTCSTHHHHHHHHHHHTSHHH CS
   SBP_bac_1 289 laipkgsknpeaAkkFldfllspea 313
                 l i+kgsk ++aA ++++f+++p+ 
  KIR66097.1 305 LSILKGSKAKKAAGEWITFVTAPAV 329
                 **********************997 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   9.2   2.8e-32   1.7e-28       3     269 ..      57     347 ..      55     359 .. 0.83

  Alignments for each domain:
  == domain 1  score: 100.3 bits;  conditional E-value: 2.8e-32
                 HHHHHHH-.TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH...-.HHHHHTT--TS.----EEEEEEE-E CS
   SBP_bac_8   3 akefekkt.gvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnldd...l.tdalaavgydgklygvPyasetpyv 96 
                 +++f++++ +v+v+v+ +++++ e+ l+aa+a g++pd+  v+   d+l+++   +++++++d+  +d    + +++ +av++dgk  g P+ +++   
  KIR66097.1  57 VAAFKADHpDVDVKVEIFPWAKREESLTAAIAGGKGPDV--VYLIPDQLGKFQ--KMIEPVDDYLPADAkadYrENVRTAVTLDGKMLGAPLLTSS-NP 150
                 89***********************************85..555579*99887..59****96644444222325599999**************8.9* PP

                 EEEEHHHHHHS....---BHHHHHHHHHHHHHH-.....SEGG---G...GGGGGTHHETTEE---H.......HHH.HHHHHHHHHHHHTT-EE.... CS
   SBP_bac_8  97 liynkdlleka...edpktwdellaaakklkgkf.....glpdpasg...wlqaallakdgksldddg.....gkdglkealellkklkdngkty.... 175
                 l+ n++++ +a   e pktw++lla+a+klk k       ++dp++    +++ +l++++g+ +++dg       ++ ++al++lk+l+d g++     
  KIR66097.1 151 LMCNAKVFAAAgltEYPKTWADLLALAPKLKAKGfdatnYYADPSATlnqSFYPLLWQAGGDVFTADGtsvafAGPEGVKALTFLKQLVDGGYVQkdli 249
                 *********98*******************977778877777766434468899999977777799999999977777***********9997334444 PP

                 -S..--SS.TTTTTSBSEEEE.-TTHHHHHH-TTTSEEEE--....S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---BS-S-T CS
   SBP_bac_8 176 dtgadavs.efanGevaftin.gswdiaaaqkagkklgaivp....kqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektgyipvnksa 268
                  + +++++ ++a+ +va+t +  ++d+ +++  ++++++ +p    k+     + +l ++k++k+++ aA ++++++t p+   a+  ++gy+++ +sa
  KIR66097.1 250 TSIPAFEQtNVAKNKVACTWQhVPADVEQFWG-KENIKIFPPlsdvKSVGYGTVGSLSILKGSKAKK-AAGEWITFVTAPAVASAYDVAGGYFSAKTSA 346
                 3335555558********997799*******7.689999999887665555555679**********.6*************************99998 PP

                 T CS
   SBP_bac_8 269 a 269
                  
  KIR66097.1 347 G 347
                 5 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   3.1e-05      0.18       4      81 ..      93     174 ..      91     184 .. 0.77
   2 !    3.6   0.0     0.006        36     184     221 ..     307     345 ..     300     362 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.1e-05
   SBP_bac_6   4 pdlilsfdkdflekfieeglfqpldpanlpnvnkdfa...eeglkdpdgkyy..pygvgplvlavnkdrlkgrpv...PksWaDLl 81 
                 pd+++ + +d l+kf  +++++p+d+  +++ + d++   ++ ++  dgk    p+ ++   l++n++++++  +   Pk+WaDLl
  KIR66097.1  93 PDVVY-LIPDQLGKF--QKMIEPVDDYLPADAKADYRenvRTAVTL-DGKMLgaPLLTSSNPLMCNAKVFAAAGLteyPKTWADLL 174
                 89999.999999999..999*****666666666666653344444.444444799999999**********999999*******9 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.006
   SBP_bac_6 184 vkkg.kkkelakafidfllspevqailakaggvfPvvtn 221
                 + kg k k+ a ++i f + p v++++  agg f ++t 
  KIR66097.1 307 ILKGsKAKKAAGEWITFVTAPAVASAYDVAGGYFSAKTS 345
                 4455569*******************9999887777644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3193.32
//
Query:       KIR66098.1  [L=420]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-21   76.9   0.2    3.7e-21   76.2   0.2    1.4  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
    6.4e-07   29.4   0.0    1.4e-06   28.2   0.0    1.6  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.2   4.1e-25   3.7e-21       1     118 [.       8     127 ..       8     129 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 4.1e-25
                   EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH.HHHTTHEEESSHHHHHTCT.TESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeav.aesfgveaysdleelladp.eidavivatpngtheelakaaleagkhvllEKPl 95 
                   +rva+ GaG+ g+ ++r + ++  ++++va+ dp++++   + a++ g++ ++d+++lla + ++dav+vat  + h e a a+++ag h+l+EKPl
    KIR66098.1   8 VRVALAGAGNRGQTYARWVAANPTRARLVAVADPRPHQRGLItAAHPGAAEFADWRDLLAADlAADAVVVATQDRMHVEPAVAFARAGRHLLVEKPL 104
                   599*************8888888888*********98766666*****************999********************************** PP

                   -SSHHHHHHHHHHHHHHTS-EEE CS
  GFO_IDH_MocA  96 attveeakelvelaekkgklvsv 118
                   a t ++++e+v++++ +g+l++v
    KIR66098.1 105 APTADQCREIVDAVRATGVLFAV 127
                   ******************99987 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.6e-10   1.4e-06       1      84 [.     141     226 ..     141     246 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.6e-10
                     HHHHHTTTTSSEEEEEE.EEECBEEECHHHHCCGGSH.HCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEE CS
  GFO_IDH_MocA_C   1 KelIengklGevvsvdv.wtldtragaeakkrwkrrk.kksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaa 84 
                     K  +++g+lGe+vsv+  + ++ +++a + +r+ +r+ +   ++l  +++Hd+D l + +G  +++va  g++r  +++++  +aa
      KIR66098.1 141 KRVVDSGVLGEIVSVQHlEPVGWWHYAHSYVRGPWRReELATPMLLAKSSHDLDWLGYVTGRRIERVASFGGLRHFRPDQAPAGAA 226
                     66799***********99*******************99999*****************************999999998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3186.46
//
Query:       KIR66099.1  [L=271]
Description: IclR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-28   96.7   0.0    1.5e-27   95.9   0.0    1.4  1  IclR           Bacterial transcriptional regulator
    1.2e-12   47.4   5.7    4.6e-12   45.5   0.3    3.4  3  HTH_IclR       IclR helix-turn-helix domain
    3.2e-05   23.7   0.9    0.00014   21.6   0.1    2.5  2  MarR_2         MarR family
  ------ inclusion threshold ------
      0.013   15.6   3.1      0.046   13.8   0.2    2.9  3  HTH_20         Helix-turn-helix domain
      0.015   15.4   1.7       0.45   10.7   0.0    3.3  3  DUF2802        Protein of unknown function (DUF2802)
      0.022   14.6   3.0      0.048   13.5   0.0    3.0  4  HTH_23         Homeodomain-like domain
      0.023   14.5   1.4         13    5.7   0.0    3.7  4  HTH_38         Helix-turn-helix domain
      0.041   13.9   0.7       0.23   11.5   0.0    2.5  3  HTH_29         Winged helix-turn helix
        0.1   12.0   0.1        0.4   10.1   0.1    2.1  1  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
       0.19   11.7   0.0        2.9    7.8   0.0    2.5  2  TrmB           Sugar-specific transcriptional regulator TrmB
       0.19   11.9   0.0        1.6    9.0   0.0    2.4  2  HTH_AraC       Bacterial regulatory helix-turn-helix proteins
       0.29   11.3   3.4        3.1    8.0   0.3    3.3  3  DprA_WH        DprA winged helix domain
       0.41   10.9   1.8        0.9    9.9   0.0    2.3  2  HTH_18         Helix-turn-helix domain
        1.2    9.0   5.0        1.5    8.7   0.1    3.3  4  HTH_AsnC-type  AsnC-type helix-turn-helix domain
        8.7    6.8  11.4        1.8    9.0   0.4    4.0  4  HTH_31         Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0   1.3e-30   1.5e-27       2     128 ..     135     260 ..     134     261 .. 0.97

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 1.3e-30
                 SEEETTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEE CS
        IclR   2 rlravsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvs 100
                 r+++++++Gtr   ++t++GKalLa ++++++ +l+ r++l r t++Titd ++L + L  vR+ Gya+d+eE+ egv ci+  ++d+sg   +A+sv+
  KIR66099.1 135 RIQIELRMGTRELPHCTGLGKALLAEMTPAQVAELIGRVGLPRRTDHTITDLDSLVAHLHDVRKAGYALDDEEDAEGVFCIGSALRDHSGGCCGAISVT 233
                 56788999***999************************************************************************************* PP

                 EETTTSHHHHHHHHHHHHHHHHHHHHHH CS
        IclR 101 gptarlteeelkeellalvreaArkisr 128
                 g +  l   + +e l  +vr+aA++is 
  KIR66099.1 234 GLKLGLPSWRYQE-LGRQVRQAAEAISV 260
                 *************.************96 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.3   3.9e-15   4.6e-12       1      51 [.      16      68 ..      16      69 .. 0.94
   2 ?    0.5   0.1      0.45   5.4e+02      15      26 ..      89     100 ..      81     114 .. 0.75
   3 ?    2.0   0.1      0.16   1.9e+02      11      32 ..     157     177 ..     156     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 3.9e-15
                HHHHHHHHHCT-CTTBSS..-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR  1 sldRalaiLdalaeapqe..ltlselArrtglpkStvhRlLqtLvelGyveqd 51
                s++Ra+++L+al++++++  l+++++Ar++gl+kS+++  L+tL ++G+   d
  KIR66099.1 16 SVSRAAEVLEALSATAPGegLSVTDVARACGLSKSAAFATLHTLCHHGLAADD 68
                89***********99999889***************************98766 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.45
                 TBSS-BHHHHHH CS
    HTH_IclR  15 apqeltlselAr 26 
                 a++ l+l+++Ar
  KIR66099.1  89 AQEQLSLRDIAR 100
                 555678888887 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.16
                 T-CTTBSS-BHHHHHHHHTS-H CS
    HTH_IclR  11 alaeapqeltlselArrtglpk 32 
                 +lae +++  ++el  r glp+
  KIR66099.1 157 LLAEMTPA-QVAELIGRVGLPR 177
                 57777886.8999999999998 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   1.2e-07   0.00014      10      51 ..      23      65 ..      17      76 .. 0.84
   2 ?   -1.0   0.1       1.4   1.7e+03      10      29 ..      81     100 ..      79     113 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.2e-07
                HHHHHHCTTTS.EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSE CS
      MarR_2 10 vLaaLgrrpgr.dltvgelarrlglsksavsrilkrLvaaGLv 51
                vL aL +  ++  l+v+++ar++glsksa+  +l  L  +GL 
  KIR66099.1 23 VLEALSATAPGeGLSVTDVARACGLSKSAAFATLHTLCHHGLA 65
                6666666555556************************999996 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
                 HHHHHHCTTTSEEEHHHHHH CS
      MarR_2  10 vLaaLgrrpgrdltvgelar 29 
                 +La Lg r  + l+ +++ar
  KIR66099.1  81 ALARLGVRAQEQLSLRDIAR 100
                 56777777777789999997 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   3.8e-05     0.046      14      58 ..      22      69 ..      18      71 .. 0.88
   2 ?   -1.6   0.1       2.4   2.9e+03      13      42 ..     100     113 ..      82     118 .. 0.55
   3 ?    0.7   0.0      0.46   5.5e+02      22      38 ..     158     177 ..     145     201 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.8e-05
                HHHHHH...STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEEC CS
      HTH_20 14 rilraL...araegltaselaerldlskntlsyHLrvLeeagLvevvr 58
                ++l aL   a++egl+++++a++++lsk+ +   L++L  +gL    +
  KIR66099.1 22 EVLEALsatAPGEGLSVTDVARACGLSKSAAFATLHTLCHHGLAADDG 69
                688888888**************************9999999976655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.4
                 HHHHHHHSTCTTB-HHHHHHHHTS-HHHHH CS
      HTH_20  13 rrilraLaraegltaselaerldlskntls 42 
                 r +l aL+r+ gl                s
  KIR66099.1 100 RPVLTALTRDTGL----------------S 113
                 3344444444444................4 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.46
                 CTTB-HHHHHHHHT...S-H CS
      HTH_20  22 aegltaselaerld...lsk 38 
                  +++t++++ae+++   l++
  KIR66099.1 158 LAEMTPAQVAELIGrvgLPR 177
                 48899999999994333444 PP

>> DUF2802  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00037      0.45      42      58 ..      34      50 ..      31      52 .. 0.92
   2 ?    1.1   0.0      0.36   4.3e+02      29      48 ..      72      91 ..      56      99 .. 0.86
   3 ?    0.0   0.0      0.79   9.5e+02      44      57 ..     164     177 ..     156     178 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00037
     DUF2802 42 qGasveelaeecgLsra 58
                +G+sv ++a++cgLs++
  KIR66099.1 34 EGLSVTDVARACGLSKS 50
                7**************96 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.36
     DUF2802 29 qsklYsqAiklvrqGasvee 48
                 +++Y+  + l+r+G+ ++e
  KIR66099.1 72 MNRRYRLGMALARLGVRAQE 91
                578999*********98876 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.79
     DUF2802  44 asveelaeecgLsr 57 
                 a v el+ ++gL+r
  KIR66099.1 164 AQVAELIGRVGLPR 177
                 7899********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     4e-05     0.048       5      46 ..      21      64 ..      16      66 .. 0.73
   2 ?   -1.5   0.1         2   2.4e+03      15      25 ..      90     100 ..      74     100 .. 0.67
   3 ?   -1.4   0.0       1.9   2.3e+03      14      28 ..     158     171 ..     155     173 .. 0.75
   4 ?   -1.5   0.1         2   2.4e+03      14      26 ..     244     257 ..     242     260 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4e-05
      HTH_23  5 reRlrilllla..eGlsvreIAreLgvsrrTvyrwlkryre.eGl 46
                 e l++l + a  eGlsv+++Ar++g s++     l++  + +Gl
  KIR66099.1 21 AEVLEALSATApgEGLSVTDVARACGLSKSAAFATLHTL-ChHGL 64
                44455666666667***************9887777765.55555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2
      HTH_23  15 aeGlsvreIAr 25 
                 +e ls r+IAr
  KIR66099.1  90 QEQLSLRDIAR 100
                 24889999996 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.9
      HTH_23  14 laeGlsvreIAreLg 28 
                 la  ++++++A++ g
  KIR66099.1 158 LA-EMTPAQVAELIG 171
                 34.5999****9988 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 2
      HTH_23  14 lae.GlsvreIAre 26 
                 ++e G  vr++A++
  KIR66099.1 244 YQElGRQVRQAAEA 257
                 56678889999987 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.011        13      19      35 ..      34      50 ..      33      51 .. 0.94
   2 ?    3.7   0.0     0.044        52      18      28 ..      90     100 ..      83     102 .. 0.85
   3 ?   -2.7   0.1       4.3   5.1e+03       6      14 ..     131     139 ..     129     141 .. 0.78
   4 ?    1.4   0.0      0.24   2.8e+02      19      32 ..     159     172 ..     154     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.011
      HTH_38 19 eGlslreIArrLgrsps 35
                eGls+ ++Ar +g s+s
  KIR66099.1 34 EGLSVTDVARACGLSKS 50
                8************9987 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.044
      HTH_38  18 aeGlslreIAr 28 
                 +e lslr+IAr
  KIR66099.1  90 QEQLSLRDIAR 100
                 788*******9 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4.3
      HTH_38   6 sleeReeIe 14 
                 s  eR +Ie
  KIR66099.1 131 SNGERIQIE 139
                 778999998 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.24
      HTH_38  19 eGlslreIArrLgr 32 
                 + ++ +++A ++gr
  KIR66099.1 159 AEMTPAQVAELIGR 172
                 679**********9 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00019      0.23      10      46 ..      34      73 ..      30      81 .. 0.84
   2 ?   -1.8   0.0       2.7   3.3e+03      10      23 ..     159     171 ..     151     172 .. 0.73
   3 ?   -3.1   0.0       6.8   8.2e+03      11      21 ..     248     257 ..     246     262 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
      HTH_29 10 eGvstvsqiAkllglsrrtvyrwlkrfeegGlaa....lld 46
                eG+s v ++A+++gls++  + +l+    +Glaa     ++
  KIR66099.1 34 EGLS-VTDVARACGLSKSAAFATLHTLCHHGLAAddgeGMN 73
                8997.**********************99999875555444 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.7
      HTH_29  10 eGvstvsqiAkllg 23 
                  ++ t++q+A+l g
  KIR66099.1 159 AEM-TPAQVAELIG 171
                 345.9999999877 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 6.8
      HTH_29  11 GvstvsqiAkl 21 
                 G  +v+q+A++
  KIR66099.1 248 GR-QVRQAAEA 257
                 56.48999986 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00034       0.4      26      42 ..      34      50 ..      17      57 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00034
  HTH_Tnp_ISL3 26 esrsvkavArqlgvSwt 42
                  e+ sv++vAr +g+S +
    KIR66099.1 34 EGLSVTDVARACGLSKS 50
                  567************76 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0024       2.9      21      58 ..      34      71 ..      18      78 .. 0.83
   2 ?    0.6   0.0      0.43   5.2e+02      16      37 ..     156     178 ..     155     179 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0024
                CCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 21 gpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                + ++++++a++ g+++s +  +L  L   Gl     + 
  KIR66099.1 34 EGLSVTDVARACGLSKSAAFATLHTLCHHGLAADDGEG 71
                56789*************************98876544 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.43
                 HHH.HHCCCHHCHHCCCTTSSCH CS
        TrmB  16 aLl.klgpatadeiaeelgvprs 37 
                 aLl +  pa++ e+  ++g+pr 
  KIR66099.1 156 ALLaEMTPAQVAELIGRVGLPRR 178
                 56668899999999999999996 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0013       1.6       8      23 ..      35      50 ..      32      52 .. 0.89
   2 ?   -0.9   0.0       1.6   1.9e+03       6      15 ..      90      99 ..      88     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0013
                T--HHHHHHHTTSSHH CS
    HTH_AraC  8 nltiediAdelgfSrs 23
                +l+++d+A ++g+S s
  KIR66099.1 35 GLSVTDVARACGLSKS 50
                79***********987 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.6
                SCT--HHHHH CS
    HTH_AraC  6 stnltiediA 15
                ++ l+++diA
  KIR66099.1 90 QEQLSLRDIA 99
                6789*****9 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.3    0.0026       3.1      14      47 ..      20      57 ..      16      59 .. 0.84
   2 ?   -0.0   0.1      0.83     1e+03       9      23 ..      94     108 ..      88     132 .. 0.65
   3 ?    1.2   0.0      0.35   4.1e+02      24      38 ..     162     176 ..     150     179 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0026
     DprA_WH 14 errvLaaLgpe....PvhvDqLvrrtglpaaevsaaLl 47
                ++ vL+aL+++     ++v +++r++gl+ ++  a+L 
  KIR66099.1 20 AAEVLEALSATapgeGLSVTDVARACGLSKSAAFATLH 57
                578999**987655578**************9999996 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.83
     DprA_WH   9 plddlerrvLaaLgp 23 
                 +l d +r vL+aL  
  KIR66099.1  94 SLRDIARPVLTALTR 108
                 556778888888843 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.35
     DprA_WH  24 ePvhvDqLvrrtglp 38 
                 +P +v +L+ r+glp
  KIR66099.1 162 TPAQVAELIGRVGLP 176
                 7899999**999998 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00075       0.9      33      65 ..      20      55 ..      10      60 .. 0.74
   2 ?   -1.2   0.1       2.1   2.5e+03      29      52 ..      74      99 ..      72     102 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00075
                HHHHHHHHHS...SS---HHHHHHHTT-S-HHHHHH CS
      HTH_18 33 lerArrlLle...ntglsvaeiAlalGFsdlsrFsr 65
                  ++ ++L      +glsv+++A a+G s  ++F++
  KIR66099.1 20 AAEVLEALSAtapGEGLSVTDVARACGLSKSAAFAT 55
                44455555432113589****************986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.1
                HHHHHHHHHHHHHS..SS---HHHHH CS
      HTH_18 29 rrlRlerArrlLle..ntglsvaeiA 52
                rr+Rl  A ++L    +++ls+ +iA
  KIR66099.1 74 RRYRLGMALARLGVraQEQLSLRDIA 99
                78999999998843335677888887 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1    0.0013       1.5      18      34 ..      36      52 ..      24      59 .. 0.87
   2 ?   -1.6   0.0         2   2.4e+03      19      26 ..      94     101 ..      89     114 .. 0.66
   3 ?   -2.3   0.0       3.4   4.1e+03      19      29 ..     162     175 ..     157     179 .. 0.54
   4 ?    0.3   0.1      0.55   6.5e+02      20      37 ..     244     261 ..     242     263 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0013
  HTH_AsnC-type 18 isyaeLAervGlSestv 34
                   +s++++A+++GlS s++
     KIR66099.1 36 LSVTDVARACGLSKSAA 52
                   599***********997 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2
  HTH_AsnC-type  19 syaeLAer 26 
                    s +++A+ 
     KIR66099.1  94 SLRDIARP 101
                    67777773 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.4
  HTH_AsnC-type  19 syaeLAe...rvGl 29 
                    + a++Ae   rvGl
     KIR66099.1 162 TPAQVAEligRVGL 175
                    44555553336666 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.55
  HTH_AsnC-type  20 yaeLAervGlSestvlrR 37 
                    y+eL+++v  +++++  R
     KIR66099.1 244 YQELGRQVRQAAEAISVR 261
                    789999998777777766 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.4    0.0015       1.8      13      29 ..      31      50 ..      14      52 .. 0.76
   2 ?   -0.4   1.4       1.3   1.5e+03       1      22 [.      77     100 ..      77     112 .. 0.83
   3 ?    1.7   0.0      0.28   3.4e+02      14      26 ..     160     178 ..     139     199 .. 0.80
   4 ?   -0.4   0.0       1.3   1.5e+03       1      13 [.     246     258 ..     227     266 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0015
      HTH_31 13 a...GLsqeevAerlgvses 29
                a   GLs ++vA+++g+s+s
  KIR66099.1 31 ApgeGLSVTDVARACGLSKS 50
                2666**************98 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.3
      HTH_31   1 aLGalLra..lReraGLsqeevAe 22 
                 +LG+ L++   R+++ Ls+++ A+
  KIR66099.1  77 RLGMALARlgVRAQEQLSLRDIAR 100
                 689999995558888999999997 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.28
      HTH_31  14 GLsqeevAerlg......v 26 
                  ++ ++vAe++g       
  KIR66099.1 160 EMTPAQVAELIGrvglprR 178
                 6899999999995555544 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.3
      HTH_31   1 aLGalLralRera 13 
                 +LG+++r++ e+ 
  KIR66099.1 246 ELGRQVRQAAEAI 258
                 4566666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1874.66
//
Query:       KIR66100.1  [L=459]
Description: aminotransferase class III [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-55  187.2   0.0    4.6e-55  186.9   0.0    1.1  1  Aminotran_3    Aminotransferase class-III
     0.0057   15.9   0.0      0.023   13.9   0.0    1.9  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.9   0.0   5.2e-59   4.6e-55      11     351 ..      37     366 ..      28     431 .. 0.84

  Alignments for each domain:
  == domain 1  score: 186.9 bits;  conditional E-value: 5.2e-59
                  EEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHHH CS
  Aminotran_3  11 lvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKlar 108
                  +vi +a G++ +d+dg++y D  +++ + +lGh++P+v++av+e+   + ++   +  ++  ++lae l++l+p  ++kv+l  +GseA+  Al++ar
   KIR66100.1  37 MVIARASGARFWDADGRQYTDYHAAFGPPLLGHNDPDVNAAVAEAGTRVDLCG--VAVTHGEIQLAETLAELVPS-IEKVLLTSTGSEATFHALRVAR 131
                  799**********************************************8887..4444455789*********9.********************** PP

                  HHHHHTSHCTT-EEEEETTT---SS.HHHHHHSS--TTTTTTCT.TB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCETT CS
  Aminotran_3 109 kyarekkatektkiiafkgafHGrt.lgalsvtgskkkyktlfg.pflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiqge 204
                  +      at +  +++f+g++HG     +l v +   + + +++ p++ ++    ++ + vl +n+        +++a  +++ d++aAvivEp++ +
   KIR66100.1 132 A------ATGRRLVVKFQGCYHGWHdSVSLNVISA--PDRVGVPdPISTGILPEVLDATLVLRFND------VAAVRAAFAAHGDDIAAVIVEPVPHN 215
                  *......****************541345555444..33333331444455444455566678888......5567777799**************** PP

                  TTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTT.TTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTS.....B--TTTT-HH CS
  Aminotran_3 205 gGvvvaspeflaklrelckkhdvllivDEvqtGf.GrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgs.....hgsTfgGnpl 296
                   G   +++efl++lr+ c++ + +l++DEv tGf    G +  +   gv+pDl+tl+Ka+++G+p+ a  ++a++m+ +++        ++T+ G p 
   KIR66100.1 216 VGCLLPDQEFLQALRDECTRAGSVLVFDEVITGFrHDLGGWQRI--SGVTPDLTTLGKAIANGYPIGALGGRADLMDLFSTRPgapafFAGTYNGHPA 311
                  **********************************5445634333..4********************************877688999********** PP

                  HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEE CS
  Aminotran_3 297 acavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaie 351
                    a+ala+l  +  e + e++ +lg++ ++g  e+ ++  v + v g G +++  
   KIR66100.1 312 VVAAALATLGKLRAEPVHEHVYRLGERARAGIAEALADLGVPAVVTGHGSVFVTY 366
                  *******************************999998888999999999988764 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.5e-06     0.023      43     361 ..      93     425 ..      66     426 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.5e-06
                    TTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-E.EEEEESS-THHHHHHHHTTSE.EEEEEBEET........... CS
  Aminotran_1_2  43 idglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgde.ilvpdptyasyknilrlsgge.vvryplyse........... 125
                    ++g  +l e+la+++             v+++s  +++   + +++++ +g++ ++ ++  y   ++ + l+ +    r+ + ++           
     KIR66100.1  93 THGEIQLAETLAELVP--------SIEKVLLTSTGSEATFHALRVARAATGRRlVVKFQGCYHGWHDSVSLNVISaPDRVGVPDPistgilpevld 180
                    5666666666666666........444566666666666666666666555552333455555555555555555566666555566666666665 PP

                    ...TTTEE-HHHHHHHHTTHHCTTETEEEEEEE.SS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEE CS
  Aminotran_1_2 126 ...edfhldlealeealkeapegnkktkvilve.sphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivg 217
                         + +d+ a+ +a +  + +++    ++ve  phN    +++ e l++l d +++ + +l++De+  gf  + l+ ++ +++v ++       
     KIR66100.1 181 atlVLRFNDVAAVRAAFAA-HGDDI--AAVIVEpVPHNVGCLLPDQEFLQALRDECTRAGSVLVFDEVITGFRHD-LGGWQRISGVTPDLT----- 267
                    4443345677777777764.45555..555555155666667778899********************9999997.767777999999755..... PP

                    ESSSTTSSGGG-EEEEEEEHHHHHHHHH..HHHHHTS.SHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHH.HHHHHHHHSTEEEECCS.CSS CS
  Aminotran_1_2 218 slsKafGlaGeRvGyilgnaavvsqlrk..lsrpfls.ssllqaavaaalsdallkqs..eleemrqrlqkrrk.elrdeLaelglkvlasq.sgm 306
                    +l+Ka +  G  +G++ g a++ +       + +f   +  + +av+aa+ ++l k +   ++e + rl +r++  + ++La+lg++ +    + +
     KIR66100.1 268 TLGKAIA-NGYPIGALGGRADLMDLFSTrpGAPAFFAgTYNGHPAVVAAALATLGKLRaePVHEHVYRLGERARaGIAEALADLGVPAVVTGhGSV 362
                    *****95.68889*****997777654300333333377777777777777766655557999999999988652689999999887655551444 PP

                    EEEEEETHHCHHHHHHH.HHHTCTEEEEEGGGGTS.........TTEEEEECTTS-HHHHHHHHH CS
  Aminotran_1_2 307 flltdlsaetakelskk.Lleevgvyvtpgtsftv.........pgrlRitvAglteeeleelve 361
                    f+   ++   a   ++  L++  g  +   + +            +r  i++ ++t++++++lve
     KIR66100.1 363 FVTYFMPGP-APRSYDDlLRNDAGMFIGYRRRMPEhgifelplnLKRNHISY-AHTDADIDHLVE 425
                    444444444.344444445555555443322222224455555544456777.777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3265.48
//
Query:       KIR66101.1  [L=395]
Description: galactonate dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-60  201.8   0.8    1.5e-59  201.3   0.8    1.2  1  MR_MLE_C  Enolase C-terminal domain-like
    2.5e-12   47.0   0.0    8.3e-12   45.4   0.0    1.8  2  MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.3   0.8   1.6e-63   1.5e-59       2     219 ..     148     370 ..     147     371 .. 0.95

  Alignments for each domain:
  == domain 1  score: 201.3 bits;  conditional E-value: 1.6e-63
                 HHHHHHHHHHHHT-SEEEEETSSS........HHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGGGTESEEESSSSTTTHHHHHHH CS
    MR_MLE_C   2 laeearelvaeqgfravKlkvggd........dvaedvervravreavgpgddvdlmvDanqawdlatAirvareleeldllwlEEPvppeddleglae 92 
                 +ae+ar+ va +g++a+K++++g         ++++ ++ v+avr+avgp  +++l+v+ ++++   tA r++rele++dl w+EEP+p+ + +e +ae
  KIR66101.1 148 FAERARATVA-KGYTALKFDPFGAglgelsraELRRSIDIVAAVRAAVGP--EIELYVEGHARFAMHTAARLVRELEPFDLGWFEEPLPWTH-IERYAE 242
                 5788977666.5**********99************************77..56**********************99************65.****** PP

                 HHHHHSSEEEESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCSSHHHHHHHHHHHHTTTTBEEEEEEGGGGH.TSG CS
    MR_MLE_C  93 lrarasipiaagEslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgsgglglaaslhlaaaipnllileyfldael.lee 190
                 lrara++pi +gE+ ++r+++++l++++avdi+qpd+s +gG+te+rk+aa+a+++ + vapH+ +++l + as+h    +pn++ile f +  +    
  KIR66101.1 243 LRARATMPISGGEHFHNRYEYARLFATDAVDIIQPDLSMAGGFTEVRKLAAIADQHAMVVAPHNSNSPLCTTASVHAVLGMPNFKILETFDGLLEdYVF 341
                 **7669**********************************************************779*************************9998999 PP

                 CSBSSSSEEETTEEECTSSSBTSSEB-HH CS
    MR_MLE_C 191 elleeplevedGrvtvpdgpGlGveldee 219
                 + + ++l+v dG++++p++pGlG+el +e
  KIR66101.1 342 DAVRGALPVVDGHIDLPTAPGLGIELVDE 370
                 99***********************9876 PP

>> MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   9.3e-16   8.3e-12      27     117 .]      30     124 ..      16     124 .. 0.90
   2 ?   -2.0   0.0      0.43   3.9e+03      73      99 ..     249     275 ..     241     280 .. 0.80

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 9.3e-16
                 EEEEEEEEECTTEEEEEEEE-STTGHHHHHHHHHHHHHHHHTTSBTTHHHHHHHHHHHHCSS.....CHHHHHHHHHHHHHHHHHHTTSBHHHHTT CS
    MR_MLE_N  27 slvlvkietseGvvGigeatsvggraetikaelddhlapllvgkdaanisdlaqllkravlg.....nmsAkaaidmAlwDlkakalnlpladLlG 117
                  +  v+++t++G++G+ge t    ra++  +  ++    +l+g d+  +++++  +++  +           +++d+Al+Dl +kal++p + L G
  KIR66101.1  30 DFSYVRVHTDAGLTGVGEITHPY-RARETCQLAEAMAGRHLIGADPFDVEEIWLRMYQGDFLrggdvGGIVVSGVDQALYDLMGKALGVPAYRLTG 124
                 56789**************9988.899988888888889*******************99988899889999******************999977 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.43
                 THHHHHHHHHHHHCSSCHHHHHHHHHH CS
    MR_MLE_N  73 anisdlaqllkravlgnmsAkaaidmA 99 
                  +is+  ++ +r  ++  +A  a+d+ 
  KIR66101.1 249 MPISGGEHFHNRYEYARLFATDAVDII 275
                 578888899999999999******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 3033.94
//
Query:       KIR66102.1  [L=280]
Description: amidohydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-32  111.4   7.9    7.4e-32  111.3   7.9    1.0  1  Amidohydro_2  Amidohydrolase


Domain annotation for each model (and alignments):
>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.3   7.9   4.2e-36   7.4e-32       1     282 [.       3     270 ..       3     279 .. 0.82

  Alignments for each domain:
  == domain 1  score: 111.3 bits;  conditional E-value: 4.2e-36
                   EEEEEEE..SHHHCCCCCCGGCTSCCCHHHHHCHHTSSECCCEHCHHHHHHHHTSHHCHHHHHHHHHHHHHH.....HHHHHHHHCTTCBECEEECT CS
  Amidohydro_2   1 iDvHaHllppeaairddgepngfdpeerlafmkragvdpqlaspeallvlnaaagiaravivaalcrgannr.....vlaeaakrpdrfvggaavvp 92 
                   +DvH Hl++         ++   dp    a+++ra+    +++++ ++++  a +++r v+v + +r+   +     v+a +a+rpdr+vg  a++p
    KIR66102.1   3 VDVHSHLFD--------CPDHVGDPF--AAEAARAHGGEVDLTVRWSQYAATAPADTRTVVVGGKARRSGLWvddaaVAAYVAARPDRLVGYLALDP 89 
                   688888876........222222222..344555555555566666666666666666666666666655554444489*************99999 PP

                   SSHCHHHHHHHHHHHHTTECEEEEESSTTTCCTTTCGGHHHHHHHHHHHT-EEEEE....CHHHCHHHHHHHHHHHHHHHCCHHHHCTTSEEEESGG CS
  Amidohydro_2  93 ldpedaaaeleraveelgfkGvrlnphvggddllgdrldrpifealeelglpvdihtGpspewlfggpqettraiqplllsgvarkfPnlkivlaHg 189
                      +   +ele+   +lg++G++l p + g d+ ++++d  +++ +e++glp+ +htG     +   +++++r+ +p++l++va ++P+l++vlaH+
    KIR66102.1  90 -TQPGWRDELEHGHRDLGLRGIKLMPMYAGFDPADPAYD-DLYAYAERHGLPLLVHTG-----TTFVSTAPLRYALPVHLDEVAIRHPELRMVLAHL 179
                   .77889*********************************.****************99.....8899999*************************** PP

                   GTTTTCHHHHHHHHHHHHHCCEEECCGHHHSSEEECCHHCHHHHHHHHHHH-GGGEEEE--BTSTTSTSCTTHHHHCHHHHH......SSHHHHHHH CS
  Amidohydro_2 190 GgpserlraalellarrpnvyvklsglytellyfdspladppalarlieavgpdrilfGsDyPhptleaepealalldlval......lsdeereki 280
                   G p  +  + ++ +++++ vy+++s+l         p   +++l+++ +   + +++fGsDyP++t +a+ e l ++ +v        l+ ++ e++
    KIR66102.1 180 GHP--YEGECIAVVRKHRHVYADVSAL------HYRPFQLWHSLRLVQDYGVWHKLMFGSDYPFTTVDASIEGLRAVGRVPGipgldpLDTDQIERL 268
                   ***..999******************8......4579999999***************************999999888777778777777777766 PP

                   HT CS
  Amidohydro_2 281 lg 282
                    +
    KIR66102.1 269 IH 270
                   65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2129.89
//
Query:       KIR66103.1  [L=275]
Description: gluconate 5-dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-59  200.4   1.9    3.6e-59  200.2   1.9    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.5e-55  187.7   0.1    1.8e-55  187.5   0.1    1.1  1  adh_short     short chain dehydrogenase
      3e-15   56.6   0.7    4.1e-15   56.2   0.7    1.1  1  KR            KR domain
  ------ inclusion threshold ------
      0.013   15.0   0.3        0.1   12.0   0.3    2.3  1  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.2   1.9     8e-63   3.6e-59       1     233 [.      20     257 ..      20     258 .. 0.95

  Alignments for each domain:
  == domain 1  score: 200.2 bits;  conditional E-value: 8e-63
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Gaa+g+G+a A  la++Ga+vv++d+   + +  v++++e++ a   ++ D +d+e+++a+++ v+++ g +++lvnnag+a+   ++f e++ + +
    KIR66103.1  20 GAARGLGAAFAAGLASAGADVVVVDRPGVDlDPVVAAVTEQGRACHpYPFDLADTEAIAAWFDGVRRDRGPVHVLVNNAGVARL--EHFNEITVAAW 114
                   9***************************9977788888877666546*************************************..*********** PP

                   HHHHHHHTHHHHHHHHHHHH.HCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT.HHHH CS
  adh_short_C2  96 draldvnlyslfllakaalp.lmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg.fdel 188
                   ++++ vn+ ++f la++a++ ++++g  g+ivn+ss  + ++ ++ ++y+a+Kaa+e ltr+lA+elgp+gi+ N+++pg+i+T++  +++   +++
    KIR66103.1 115 REVMRVNVDAVFFLAQRAAEhMIADGvaGRIVNVSSKNGLMAEAGLAHYNASKAAVELLTRSLAAELGPHGITANTIAPGMIATPIDGEFPLdRQAF 211
                   *******************9677788************************************************************87777637789 PP

                   HHHHHHHSTTSS.-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 189 leelearaplgr.lgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   ++++++r+pl+   gtp ++  a l Las + +yi+G++lvvDgG+
    KIR66103.1 212 EAAWAERIPLRGgYGTPADCVGALLLLASAAGRYINGTHLVVDGGV 257
                   **********98799******************************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.5   0.1     4e-59   1.8e-55       2     189 ..      15     203 ..      14     209 .. 0.98

  Alignments for each domain:
  == domain 1  score: 187.5 bits;  conditional E-value: 4e-59
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                  ++vtGa++G+G a+a  la++Ga+vvvvdr   +l  v++ + e+g+  +++++D++d e++ a ++ ++ + g+++vLvnNAG+++ + f+e++ ++
  KIR66103.1  15 LAVVTGAARGLGAAFAAGLASAGADVVVVDRPGVDLDPVVAAVTEQGRACHPYPFDLADTEAIAAWFDGVRRDRGPVHVLVNNAGVARLEHFNEITVAA 113
                 589************************************************************************************************ PP

                 HHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short 101 wervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 w++v+ vN+ +vf l++ ++++m+ ++ +GrIvnvsS +g+++ ag+a Y AsKaav+ ltrsla el p+gi+ n++aPG+++T++  e
  KIR66103.1 114 WREVMRVNVDAVFFLAQRAAEHMIaDGVAGRIVNVSSKNGLMAEAGLAHYNASKAAVELLTRSLAAELGPHGITANTIAPGMIATPIDGE 203
                 ************************99***********************************************************99876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.7   9.1e-19   4.1e-15       4     164 ..      17     178 ..      15     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 9.1e-19
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 ++tG++ gLG ++a  la+ ga  + ++ R      d +  +a+++++g  ++ ++ D++d +a++a+++ ++++ +p++  ++ Agv+r + ++e t 
  KIR66103.1  17 VVTGAARGLGAAFAAGLASAGADVV-VVDRP---GVDLDPVVAAVTEQGRACHPYPFDLADTEAIAAWFDGVRRDRGPVHVLVNNAGVARLEHFNEITV 111
                 79*******************9755.55666...345556799******************************************************** PP

                 HHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHH CS
          KR 103 edleqvlapKvkGawnLhelled.....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrr 164
                 +++++v++  v+++  L +  ++          +v +SS  gl+ +ag a+Y a  a ++ l ++ +
  KIR66103.1 112 AAWREVMRVNVDAVFFLAQRAAEhmiadGVAGRIVNVSSKNGLMAEAGLAHYNASKAAVELLTRSLA 178
                 ***************9988666545444778899********************9999887776654 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   2.3e-05       0.1       2      91 ..      17     117 ..      16     194 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.3e-05
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHHHT-S.....EEEE--S---HHHHHHSHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrsalerlfkeeqpd.....avihlAavggvaassedpadfie 89 
                 +VtGa+  +G+a++  l+++g +v+++dr   +      + +      + +  dl d +a+++ f+ ++ d     + ++ A+v+  ++ +e   + ++
  KIR66103.1  17 VVTGAARGLGAAFAAGLASAGADVVVVDRPGVDLDPVVAAVTeqgracHPYPFDLADTEAIAAWFDGVRRDrgpvhVLVNNAGVARLEHFNEITVAAWR 115
                 8****************************9666555555555999999999999999999999988654331111134444555555555555544444 PP

                 HH CS
   Epimerase  90 kn 91 
                 + 
  KIR66103.1 116 EV 117
                 43 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2003.25
//
Query:       KIR66104.1  [L=218]
Description: hypothetical protein TK50_12795 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-14   53.3   0.0    4.2e-14   52.6   0.0    1.4  2  FMN_red       NADPH-dependent FMN reductase
    6.8e-05   22.7   0.0    8.9e-05   22.3   0.0    1.1  1  Flavodoxin_2  Flavodoxin-like fold


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   4.7e-18   4.2e-14       1     117 [.       1     125 [.       1     162 [. 0.80
   2 ?   -3.1   0.0      0.66   5.9e+03      94     116 ..     169     200 ..     167     204 .. 0.71

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 4.7e-18
                 -EEEEE.ES--STT-HHHHHHHHHHCCT-T...T-CEEEEETTTS..--.....---HCHGHTCGGSHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHH CS
     FMN_red   1 mkilvi.sGSlrkgsntrklaewaaealkea..gaevelidladl.ilpc...alcdkdlesegqtsddvaellekiaaadaliivtPeYngsysgllK 92 
                 mki+++ +  +r +s t++l+e+a   + ++  +a+++ i+l d+ i+ c   + c++ +  ++  +dd+a++++  + a a++++ P+Y g+++++lK
  KIR66104.1   1 MKIVALsCTQKRLPSVTDALLEAAITGVVREvgDAQIQRIRLIDHrIAMCegeDTCLDPEVGRCTLDDDFAHVVDLAEGAQAMLLAMPVYAGNVPAVLK 99 
                 9*****66777899**************999978***********888888876677555566************************************ PP

                 HHHHCHT-...SSCHCCTT-EEEEEEE CS
     FMN_red  93 nalDrlsr..trgkkelrgKpvalvav 117
                  + +rl    +++++++ +  v+ + v
  KIR66104.1 100 IFQERLKSfmNARHRPFGNLLVGTI-V 125
                 ******8655555555555555555.2 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.66
                 HHHCHT-..........SSCHCCTT-EEEEEE CS
     FMN_red  94 alDrlsr.........trgkkelrgKpvalva 116
                 a+D++++         ++++ +++++ +++v+
  KIR66104.1 169 AIDLCVAvgrqlgmtlDNSRSPASDRTALPVV 200
                 77777777777777777777788888888774 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   9.9e-09   8.9e-05       1     103 [.       1     105 [.       1     129 [. 0.83

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 9.9e-09
                   -EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTT.TEEEEEEHHCCT-----CCCCHCCHHHHTT.C.HHHHHHH.HHHHHCSSEEEEEEE-BTTB-- CS
  Flavodoxin_2   1 mkiLiinahprpeksfssalaqafvealekagp.hevtvrdLyadflpvlttrdlaaklayeek.p.adveseq.iekllaadaivlqfPlwwfgvP 93 
                   mki+ + + ++   s + al++a+++++  +   ++++ + L +  ++ ++ +d    l++e + +  d +  + ++  + a+a +l++P++  +vP
    KIR66104.1   1 MKIVALSCTQKRLPSVTDALLEAAITGVVREVGdAQIQRIRLIDHRIAMCEGEDTC--LDPEVGrCtLDDDFAHvVDLAEGAQAMLLAMPVYAGNVP 95 
                   89999999999989*********9999988888899*******9977888777666..444444866999999999********************* PP

                   HHHHHHHHHH CS
  Flavodoxin_2  94 ailKgwiDrv 103
                   a+lK + +r 
    KIR66104.1  96 AVLKIFQERL 105
                   ******9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1596.78
//
Query:       KIR66105.1  [L=179]
Description: hypothetical protein TK50_12800 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.18   11.9   0.2       0.33   11.0   0.2    1.4  1  Thioredoxin_3  Thioredoxin domain
       0.19   10.7   0.0       0.24   10.3   0.0    1.2  1  Omp_AT         Solitary outer membrane autotransporter beta-b


Domain annotation for each model (and alignments):
>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   3.7e-05      0.33       6      36 ..     119     149 ..     114     153 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.7e-05
                    ESSSSTTCHHHHHHHHHHCHCCTCECEEECC CS
  Thioredoxin_3   6 lgpgCakCpklekavkeaaaekgikaevekv 36 
                    +++ Ca+C++l++a+++   e++++++++++
     KIR66105.1 119 FSSPCAYCQELNTAIAARYVEPDVTVTCDQA 149
                    6899*******************99999887 PP

>> Omp_AT  Solitary outer membrane autotransporter beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.7e-05      0.24     185     231 ..     129     175 ..     116     179 .] 0.91

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.7e-05
      Omp_AT 185 vNtsanAliiepnvklkYeeekdwgkWefisslryaiGqglleadss 231
                 +Nt   A  +ep+v+++ ++  d+  W++ ss +   G + ++ +++
  KIR66105.1 129 LNTAIAARYVEPDVTVTCDQAGDGCTWRAESSPHAPAGDAAGSPQRG 175
                 79********************************9999988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1329.34
//
Query:       KIR66106.1  [L=130]
Description: hypothetical protein TK50_12805 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-20   73.3   0.1    1.6e-20   72.9   0.1    1.2  1  CMD       Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.1     9e-25   1.6e-20       1      85 []      29     113 ..      29     113 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 9e-25
                 HHHHHHHHHHHHHHCC.GSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHHHHH CS
         CMD   1 pellraltalrealla.reggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaaraAlaaaee 85 
                 pe+lr ++++ +++++ r ++L+  ereL+al++ a+ + +++++ H+ aAl+ G+++e+i ev+ q a y+gwp+a++ l++a+e
  KIR66106.1  29 PEFLRITVDHLFGEIWtR-PHLSVEERELVALTAVALARTDWELRGHIGAALHLGMSREKIVEVIIQLAYYGGWPVANNGLRVAQE 113
                 99**************66.66*********************99****************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1044.51
//
Query:       KIR66107.1  [L=388]
Description: glycosyl transferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-13   49.5   0.0    4.5e-13   48.8   0.0    1.2  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
    7.6e-08   32.5   0.0    1.3e-07   31.8   0.0    1.3  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
     0.0027   17.0   0.0     0.0047   16.2   0.0    1.3  1  Glyco_trans_1_3  Glycosyl transferase family 1


Domain annotation for each model (and alignments):
>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   7.5e-17   4.5e-13     274     407 ..     217     348 ..     211     357 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 7.5e-17
       UDPGT 274 ehGvvvfSlGsmvseipeekanaiAsaLakipqkvlWrfdgkkPs.tLakntllvkWlPqndlLgHPktkAFvtHaGangvyEaisnGvPmvglPlFgd 371
                 e+ vv++S+G++   +p+  ++++  + a  +++v+    +   +  L  + l  ++lPq ++L    +  FvtH+G n+v E++    Pm ++Pl  d
  KIR66107.1 217 ERPVVYVSFGTIFYRRPDL-LRTVILGAAATGAQVIAAVGDLAAElALPDDVLTAPYLPQREVLER--ADVFVTHGGYNSVAESVRAATPMLVIPLAVD 312
                 788***************9.88888899999999*99998876652678888999*********85..677**************************** PP

       UDPGT 372 qrdNikrmeakgaavtlnvkemtsedllnAlkevin 407
                 q+  ++ + + g + +l+   +t + ++ A+  +++
  KIR66107.1 313 QPIQAHFVGSAGFGTALQPADVTGQAVAAAVADLLD 348
                 *******************************99986 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   2.1e-11   1.3e-07      56     154 ..     266     359 ..     244     375 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 2.1e-11
                      EEEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS---S- CS
  Glyco_tran_28_C  56 kvevfefidkmaeaikaadLvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaeklrla 149
                      +v + ++ +   e++++ad+ ++++G +++aE++++  p++++pl      +q   a  + +ag ++ l+ +++t++ +++a+ +l++++ +  
       KIR66107.1 266 DVLTAPYLP-QREVLERADVFVTHGGYNSVAESVRAATPMLVIPLAV----DQPIQAHFVGSAGFGTALQPADVTGQAVAAAVADLLDPARDYR 354
                      556678888.899**********************************....************************************9998866 PP

                      --SSC CS
  Glyco_tran_28_C 150 ekska 154
                      ++ +a
       KIR66107.1 355 ARLRA 359
                      66555 PP

>> Glyco_trans_1_3  Glycosyl transferase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   7.8e-07    0.0047     251     315 ..     279     341 ..     276     346 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.8e-07
  Glyco_trans_1_3 251 LataraviagagftLmtealyLkkPlLavPvarqFeqvlnalyLerlgyGaavdakdldkedvkd 315
                      L +a   ++ +g+  ++e++    P+L++P+a   +q + a ++   g+G+a++  d+  ++v+ 
       KIR66107.1 279 LERADVFVTHGGYNSVAESVRAATPMLVIPLA--VDQPIQAHFVGSAGFGTALQPADVTGQAVAA 341
                      6677788999********************98..68****************9999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2991.54
//
Query:       KIR66108.1  [L=463]
Description: alpha-L-arabinofuranosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-47  160.8   2.2    4.2e-44  149.9   1.7    2.4  2  AbfB      Alpha-L-arabinofuranosidase B (ABFB) domain
  ------ inclusion threshold ------
       0.01   16.0   0.1       0.22   11.7   0.0    2.5  2  YpM       Yersinia pseudo-tuberculosis mitogen


Domain annotation for each model (and alignments):
>> AbfB  Alpha-L-arabinofuranosidase B (ABFB) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.9e-07    0.0035      83     124 ..     309     351 ..     290     356 .. 0.82
   2 !  149.9   1.7   4.7e-48   4.2e-44       1     140 []     327     461 ..     327     461 .. 0.98

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.9e-07
                 HHCT-EEEEE-T.S.TTCEEEEESSSTTEEEEEETTEEEEEES CS
        AbfB  83 keDATFcpqaGl.adsgsvsleSynypgrylRhynnelyiasn 124
                   DA + +  +  ++ ++v+l+S n p+ ++Rh n +++i+++
  KIR66108.1 309 ITDAEYNAAVSRwGAPNWVRLKSSNLPDYFVRHSNGAVRIDPY 351
                 56888888877778899***********************986 PP

  == domain 2  score: 149.9 bits;  conditional E-value: 4.7e-48
                 EEEECTTSTTEEEEEETTCEEEECE--TTSSHCCHHHC-EEEEE-SS-TTCEEEEESSSTTEEEEEETTEEEEEE--SSHHHHHCT-EEEEE-TS.TTC CS
        AbfB   1 lrltsanytdrYlrhsnksavltevvsssssaalkqdatftvvaGLadsscvSfesvntpgsyLRhsnfrlrleandgsklFkeDATFcpqaGladsgs 99 
                 +rl+s+n++d ++rhsn  +++++     ++  + qd+++++v+GLadss+vSfesvn pg+yLRhs +  rl+and++++F++DATF ++aGlads++
  KIR66108.1 327 VRLKSSNLPDYFVRHSNGAVRIDP-----YPFDPYQDQMWRMVPGLADSSAVSFESVNRPGNYLRHSGYVARLAANDNTSTFRADATFYRTAGLADSSW 420
                 589**************9999999.....9****************************************************************99*** PP

                 EEEEESSSTTEEEEEETTEEEEEESS-G-SCCHHHHT-EEE CS
        AbfB 100 vsleSynypgrylRhynnelyiasnggdatasfraDatfvv 140
                 +s++Syn+p+rylRh n++l+i++ +  +++++r+ atf+v
  KIR66108.1 421 SSFRSYNFPDRYLRHSNYVLRIDPLSAGSSEADRQSATFRV 461
                 **************************999**********96 PP

>> YpM  Yersinia pseudo-tuberculosis mitogen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.041   3.6e+02      30      48 ..     156     174 ..     152     180 .. 0.84
   2 ?   11.7   0.0   2.5e-05      0.22      40      74 ..     269     303 ..     231     312 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.041
         YpM  30 gelyavlystnvnadmtli 48 
                    ya++ys+n  +d+ l+
  KIR66108.1 156 RGQYAIVYSANTSTDLFLV 174
                 457************9887 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.5e-05
         YpM  40 nvnadmtlillrnvggngwgeikrndidkplkyed 74 
                  vn dm +    nvggn w  +++ d   pl+ + 
  KIR66108.1 269 PVNNDMYMWSTSNVGGNSWSVMNQRDYTPPLNCKH 303
                 69************************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 2924.80
//
Query:       KIR66109.1  [L=693]
Description: glycoside hydrolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-40  138.7   6.8    3.8e-40  138.0   6.8    1.3  1  Glyco_hydro_43   Glycosyl hydrolases family 43
    4.5e-32  110.6  27.4    7.3e-22   77.9   5.5    4.4  5  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    1.9e-28   99.6   2.8      2e-28   99.5   0.1    2.4  3  GH43_C2          Beta xylosidase C-terminal Concanavalin A-li
    7.4e-14   52.1   2.6    1.5e-13   51.1   2.2    1.8  2  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
     0.0006   20.0   0.0        1.7    8.8   0.0    3.3  3  PAS_7            PAS fold


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0   6.8     1e-43   3.8e-40       1     288 []     199     466 ..     199     466 .. 0.86

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 1e-43
                     EESESBCSSEESEEEEEETTCEEEEEEEBTEESEEEEEEESSSSSCEEEEECEESTTTCSTTTEECT.........EEEEEEEE..TTEEEEEEE CS
  Glyco_hydro_43   1 yrnPvlsgfypDpsilrvgedyYlvtstfewfpglrifhSkdLvnWkqvgrvlerrsqlsmkgknas.........WAPeiskh..dgkyylyyt 84 
                     y+nPvl ++ +D +i+rvg+ yYl  st  + pg ++ +S dLvnW+ +g+++ r +  s  + + s         WA +++++  +g++y + +
      KIR66109.1 199 YTNPVLWQDFADVDIIRVGDAYYLSSSTMHYSPGAPVLRSYDLVNWEFAGHSVPRLDFGSKYDLPSStsrayvngiWASTLNYRasNGTFYWIGC 293
                     89*************************************************9987654333333333344678999*****975449******** PP

                     EEETTCCCSEEEEEEESSTTS--EECEESSCSTSSECEEEEEEETTSEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEEEEEEEEECGCCTCTTB CS
  Glyco_hydro_43  85 atkkgeakqgifvvtadspeGpwsdpiklktsgssgiDpslfedddGkkYlvwgqwdkreghseiylaeldddtlklkgektklikagtelkglk 179
                           + ++ +v t++s+ G+w++  ++   ++ + D++l++dd+ + Y+++g+       s++ +a+l++d+l+++ ++ ++ ++ +   ++ 
      KIR66109.1 294 -----IDFNKSYVYTSTSVSGTWQKRSEI---NNCYYDAGLLVDDNDTMYVAYGN-------STLHVAQLSADGLSQVRTQ-QVYTTPS---NIG 369
                     .....466789******************...9**********************.......6788***************.7777777...8** PP

                     BEEEEEEEEETTEEEEEEEESTSSTTEEEEEEEESSTTSGGEEECTCCSEE.TBTTSTSEEEEEEEEEE-TTSSEEEEEEEESCCTTCCGTTSSE CS
  Glyco_hydro_43 180 vtEGPhlykrdgyyYLlaaeggtgseyavvvarsksllgPyewkkknpiltsrspeepiqgpGHaslvetpdgewyivyhagrpegrglytlgRe 274
                     + EG  +ykr+gyyY+++   + g    + + rs+s++gPye++  + +l    p  +   p++++lv+t++g+wy++    ++      + gR 
      KIR66109.1 370 TLEGSRFYKRNGYYYIFVTKPANG----QYILRSTSPWGPYETR--QVLLNMPGPISGGGVPHQGGLVQTQNGQWYYMAFVDAY------PGGRV 452
                     *****************9665555....568**********999..555555577777777899**********8765544444......7**** PP

                     EEEEEEEEETTSEE CS
  Glyco_hydro_43 275 tllqrvewkaDGwp 288
                     ++l +++w+aDGwp
      KIR66109.1 453 PALAPITWTADGWP 466
                     *************8 PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   5.5     2e-25   7.3e-22      12      89 .]      49     126 ..      42     126 .. 0.95
   2 !   46.2   1.7   1.6e-15   5.7e-12       1      59 [.     132     190 ..     132     194 .. 0.95
   3 ?   -1.9   0.0       1.7   5.9e+03      10      17 ..     378     385 ..     338     404 .. 0.62
   4 ?   -1.2   0.3      0.99   3.6e+03      41      54 ..     505     519 ..     493     553 .. 0.61
   5 ?   -1.2   0.9         1   3.6e+03      48      86 ..     574     611 ..     513     613 .. 0.63

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 2e-25
                      TTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  12 dgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      +  y+++n++sgk+Ld  +++t++ga++ qwt +++a qqW+++d g+g+yr+++++sgkvLdv+g s+a+G++v qw
       KIR66109.1  49 TASYVLVNRNSGKALDLYNQATNDGARITQWTRNDGAWQQWQFVDSGGGYYRLKSRHSGKVLDVSGVSAADGAAVVQW 126
                      457********************************************99****************9999********9 PP

  == domain 2  score: 46.2 bits;  conditional E-value: 1.6e-15
                      CCGEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCES CS
  RicinB_lectin_2   1 anQqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgd 59 
                      +nQq++l +++dgy+++ +++s+k+++++++sta+g nv+q+++ g++nqqW+l++ gd
       KIR66109.1 132 TNQQFRLADSADGYVRLIARHSNKAVEIQNASTADGGNVVQYADWGGNNQQWQLVRVGD 190
                      69*****8899*******************************************99886 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.7
                      TTTTEEEE CS
  RicinB_lectin_2  10 ggdgyyti 17 
                      + +gyy i
       KIR66109.1 378 KRNGYYYI 385
                      33444444 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.99
                      EE-TT.T-GGCEEEE CS
  RicinB_lectin_2  41 qwtcs.gaanqqWrl 54 
                       w+++ + +n++W  
       KIR66109.1 505 HWEWNhNPDNTKWSA 519
                      566665667888874 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 1
                      GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEE CS
  RicinB_lectin_2  48 anqqWrledtgdgtyrivnkasgkvLdvaggstanGtnv 86 
                      ++  W+ ++ ++g  r+v   +g+ +d +   t+ Gt +
       KIR66109.1 574 DSSAWIGVRRDNGATRVVM-TNGLTMDSSWRTTSTGTEI 611
                      5566777777777666665.4556777774444777765 PP

>> GH43_C2  Beta xylosidase C-terminal Concanavalin A-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.2   4.4e+03      12      41 ..      78     106 ..      77     112 .. 0.76
   2 ?   -1.6   0.0       0.5   1.8e+03      82     104 ..     376     398 ..     374     401 .. 0.80
   3 !   99.5   0.1   5.6e-32     2e-28       2     200 ..     495     689 ..     494     691 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.2
     GH43_C2  12 qWqwlrnPkdedwyslterpgyLrLkgres 41 
                 qW  +     ++w  + +  gy rLk r+s
  KIR66109.1  78 QWTRNDGAW-QQWQFVDSGGGYYRLKSRHS 106
                 677777766.88888888999999998864 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.5
     GH43_C2  82 yqneyhyyslevtkdekgkrvlr 104
                 +++ + yy++ vtk  +g+++lr
  KIR66109.1 376 FYKRNGYYYIFVTKPANGQYILR 398
                 78999********9866666655 PP

  == domain 3  score: 99.5 bits;  conditional E-value: 5.6e-32
     GH43_C2   2 ddFdsdkLglqWqwlrnPkdedwyslterpgyLrLkgre.slsskeapsllarRqqafsftattklefepekegeeAGLvvyqneyhyyslevtkdekg 99 
                 d F s++L+++W w++nP++ +w s     + LrL+++  + + + a+++ +rR+q++  tat++l+++ + +g+  GL+++ +++++  ++v++d++ 
  KIR66109.1 495 DTFTSTTLSPHWEWNHNPDNTKW-SA---GSGLRLQTATvTNDLYSARNTATRRIQGPTSTATIELDYSTMRDGDRSGLAMLRDSSAW--IGVRRDNGA 587
                 99*****************9999.77...899******855555899*****************************************..567777556 PP

     GH43_C2 100 krvlrlvkadngeakeelkeekvplqtev...kevyLrleve.....edkakfsysydgkeweeigeeldgtllsdefaeggFtGafvGlfatgngkes 190
                  rv+     +  + +  ++++  ++ + +    +++Lr++++     + +a+fsys+dg ++ ++g+   + +l++ ++   F+G ++++f++++ ++ 
  KIR66109.1 588 TRVVMTNGLT-MDSSWRTTSTGTEIASAAvsgGRIWLRAKADirpgsGRQASFSYSTDGVNFVPLGN---ALTLNNAWQ--FFMGYRFAIFNYAT-QAL 679
                 6666444433.33344444444444333235568******994443235667777777777777776...777888886..**************.*** PP

     GH43_C2 191 sgyAdFdwfe 200
                 +g +++  f+
  KIR66109.1 680 GGAVTVRRFD 689
                 ****999997 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   2.2   4.1e-17   1.5e-13       2     127 .]      51     183 ..      50     183 .. 0.92
   2 ?   -3.5   0.0       3.4   1.2e+04      79      94 ..     598     613 ..     583     619 .. 0.60

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 4.1e-17
                     EEEEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEE..TTSEEEETT..TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTT CS
  Ricin_B_lectin   2 sgeirnvasgkCLdvegeska.gapvglydChgskgkQlwtlt..kdgeirska.qselCldvs..staegakvvlakChkgkgnqrWefdkdgt 90 
                     s+ ++n++sgk Ld  +++++ ga++++++ ++++  Q+w++   + g +r+k+ +s++ ldvs  s a+ga vv+++   +++nq++++ ++++
      KIR66109.1  51 SYVLVNRNSGKALDLYNQATNdGARITQWTRNDGAW-QQWQFVdsGGGYYRLKSrHSGKVLDVSgvSAADGAAVVQWSDV-NGTNQQFRLADSAD 143
                     56799****************************966.****996666899999899**********************88.777*****998888 PP

                     E...EEETTTSEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  91 q...irhkksgkCLdvkgasksne.klilkkcdsgsdsQkW 127
                     +   ++ ++s+k +++++as++++ +++++  d g ++Q+W
      KIR66109.1 144 GyvrLIARHSNKAVEIQNASTADGgNVVQY-ADWGGNNQQW 183
                     888899999***************999999.78******** PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.4
                     GGGCEEEETTTTEEEE CS
  Ricin_B_lectin  79 gnqrWefdkdgtqirh 94 
                      +  W+ ++ gt+i +
      KIR66109.1 598 MDSSWRTTSTGTEIAS 613
                     3566777777776655 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.13   4.5e+02      68     104 ..      43      79 ..      28      81 .. 0.77
   2 !    8.8   0.0   0.00047       1.7      67     107 ..      89     129 ..      43     135 .. 0.83
   3 !    6.3   0.0    0.0029        10      75     106 ..     144     175 ..     131     179 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.13
       PAS_7  68 aaaragkphsfererpdgrvievrgnplpdgGfVtty 104
                 aa  + +++++ ++r++g+ +++ ++++ dg  +t +
  KIR66109.1  43 AATVDTTASYVLVNRNSGKALDLYNQATNDGARITQW 79 
                 4555667788888899999999999999998888765 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00047
       PAS_7  67 laaaragkphsfererpdgrvievrgnplpdgGfVttytDi 107
                  + + +g  ++  ++r++g+v++v g   +dg  V+ ++D+
  KIR66109.1  89 WQFVDSGGGYYRLKSRHSGKVLDVSGVSAADGAAVVQWSDV 129
                 34778889999999**************************9 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0029
       PAS_7  75 phsfererpdgrvievrgnplpdgGfVttytD 106
                  +     r++++ +e+++  ++dgG V+ y D
  KIR66109.1 144 GYVRLIARHSNKAVEIQNASTADGGNVVQYAD 175
                 55566789999*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 4557.30
//
Query:       KIR66110.1  [L=253]
Description: 2-deoxy-D-gluconate 3-dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-60  202.5   0.3    8.7e-60  202.2   0.3    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.7e-54  184.3   0.0      2e-54  184.0   0.0    1.1  1  adh_short     short chain dehydrogenase
    1.8e-12   47.5   0.2    2.5e-12   47.1   0.2    1.2  1  KR            KR domain
     0.0025   17.3   0.3     0.0094   15.4   0.3    1.9  1  Epimerase     NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.22   10.8   0.0       0.29   10.5   0.0    1.1  1  DUF1776       Fungal family of unknown function (DUF1776)


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.2   0.3   2.4e-63   8.7e-60       1     233 [.      15     250 ..      15     251 .. 0.94

  Alignments for each domain:
  == domain 1  score: 202.2 bits;  conditional E-value: 2.4e-63
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                   G  +gIG a+A+ala++Ga++v + +  e+   +  +++a+++ +  ++++D +d+ +v+al+e++ +    +Dilvnnag  ++  +p++e s+ +
    KIR66110.1  15 GCRRGIGLAMAEALAAAGADIVGVSAALEEsgSEVGRRVAAQGRSFeAYRTDLSDRVAVRALAERLGQLPRPVDILVNNAGTIRR--APAAEHSEHD 109
                   6679*****************998877777645555666666554357*************************************..********** PP

                   HHHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHH CS
  adh_short_C2  95 fdraldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdell 189
                   +d++l+vnl + flla+++ + ++++g g+i+ ++s+ + ++      y+aaK a+ +ltr+lA+e++p+g+ vNa++pg+i+T+ ++++++++e  
    KIR66110.1 110 WDHVLEVNLSAPFLLAREVGReMVRRGtGKIIFTASMLSFQGGVTVPGYAAAKSAIAGLTRALANEWAPHGVNVNAIAPGYIDTDNTRALREQPERN 206
                   *********************7777779********************************************************************* PP

                   HHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 190 eelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   +++ +r+p gr+g+p++ a a++fLasd+a+y++G+++ vDgG+
    KIR66110.1 207 RAILERIPAGRWGRPDDLAGATVFLASDAAAYVNGAVIPVDGGW 250
                   *******************************************6 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.0   0.0   5.6e-58     2e-54       2     193 ..      10     202 ..       9     204 .. 0.97

  Alignments for each domain:
  == domain 1  score: 184.0 bits;  conditional E-value: 5.6e-58
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                  ++vtG+ +GIG+a+a++la++Ga++v   +  ee   ev   + ++g+++ a+++D++dr +v+al e+  +   ++d+LvnNAG  +++p++e+se 
  KIR66110.1  10 LAVVTGCRRGIGLAMAEALAAAGADIVGvSAALEESGSEVGRRVAAQGRSFEAYRTDLSDRVAVRALAERLGQLPRPVDILVNNAGTIRRAPAAEHSEH 108
                 589***********************996788899999************************************************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelrek 193
                 +w+ v+evNl ++fll+r+v ++m+++  G+I++++S+ ++++   v+ Y+A+K a+agltr+la+e+ap+g++vna+aPG++dTd +++lre+
  KIR66110.1 109 DWDHVLEVNLSAPFLLAREVGREMVRRGTGKIIFTASMLSFQGGVTVPGYAAAKSAIAGLTRALANEWAPHGVNVNAIAPGYIDTDNTRALREQ 202
                 *****************************************************************************************99987 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.2     7e-16   2.5e-12       4     166 ..      12     175 ..      10     193 .. 0.85

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 7e-16
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 ++tG+  g+Gl++a+ la+ ga  +v +s     +e+ ++  ++++a+g + e+++ D+sd+ av+al e++ +  +p+   ++ Ag++r ++ +e+++
  KIR66110.1  12 VVTGCRRGIGLAMAEALAAAGAD-IVGVSAA--LEESGSEVGRRVAAQGRSFEAYRTDLSDRVAVRALAERLGQLPRPVDILVNNAGTIRRAPAAEHSE 107
                 79*******************96.5555555..677788899********************************************************* PP

                 HHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHH CS
          KR 103 edleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsq 166
                  d+++vl+  +++   L + + +    +    +++++S+ ++ g  +   Yaaa + + +l +  +++
  KIR66110.1 108 HDWDHVLEVNLSAPFLLAREVGRemvrRGTGKIIFTASMLSFQGGVTVPGYAAAKSAIAGLTRALANE 175
                 **************9999877774565677899*********************99887655444433 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   2.6e-06    0.0094       2      62 ..      12      79 ..      11     199 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.6e-06
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHH CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfke 62
                +VtG +  iG a+++al+++g +++g++   ++s ++  +++       e ++ dl dr+a+++l ++
  KIR66110.1 12 VVTGCRRGIGLAMAEALAAAGADIVGVSAALEESGSEVGRRVaaqgrsfEAYRTDLSDRVAVRALAER 79
                8****************************999999888888899******************998875 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     8e-05      0.29     112     207 ..     106     198 ..      88     218 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8e-05
     DUF1776 112 plsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLGnldlangsq 207
                 +++ w  +l+ +l++p+l+  +    +     + +  i++++s++s    +  +  a   sa+  l+++L++e +ph+++v  i  G +d  n  +
  KIR66110.1 106 SEHDWDHVLEVNLSAPFLLAREVGREMVR---RGTGKIIFTASMLSFQGGVTVPGYAAAKSAIAGLTRALANEWAPHGVNVNAIAPGYIDTDNTRA 198
                 56667777777777777777777777775...4455677888888888888888889999*****************************9987333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1954.78
//
Query:       KIR66111.1  [L=341]
Description: molecular chaperone GroES [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-32  111.6   0.6    3.6e-32  110.5   0.6    1.6  1  ADH_N          Alcohol dehydrogenase GroES-like domain
    6.7e-26   90.8   0.4    8.1e-25   87.3   0.2    2.3  2  ADH_zinc_N     Zinc-binding dehydrogenase
    8.6e-09   35.2   2.4    1.2e-08   34.7   2.4    1.1  1  Glu_dehyd_C    Glucose dehydrogenase C-terminus
    2.1e-06   28.8   0.3    4.7e-06   27.7   0.3    1.5  1  ADH_zinc_N_2   Zinc-binding dehydrogenase
    0.00051   19.4   1.2      0.001   18.4   1.2    1.5  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0027   17.0   2.3     0.0048   16.2   2.3    1.4  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.005   16.9   0.5     0.0095   16.0   0.2    1.6  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
     0.0091   16.5   0.4     0.0091   16.5   0.4    2.6  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.027   13.7   0.2      0.039   13.2   0.2    1.2  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.035   12.8   0.1      0.051   12.3   0.1    1.2  1  HI0933_like    HI0933-like protein
       0.04   14.2   0.1       0.12   12.7   0.1    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      0.083   12.2   0.0       0.17   11.2   0.0    1.5  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.6   2.4e-35   3.6e-32       1     109 []      25     133 ..      25     133 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 2.4e-35
                 TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSEE CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvsldGgfaeyv 99 
                 pgev+i+v+++giCg+Dlh+++g  + +v+ p ++GHE++G ++evg +v++ +vGd V+v pl  cgeC+aC+ g++++C++ +++g++ +G++++  
  KIR66111.1  25 PGEVRIDVAYTGICGTDLHVAHGAMDRRVRVPAVIGHEMAGRIAEVGAGVEGHRVGDPVTVMPLDWCGECPACRAGHSHICHRLNFVGIDSPGSMQRSW 123
                 689************************************************************************************************ PP

                 EECGGGEEEE CS
       ADH_N 100 vvpekklvkl 109
                 +vp++ lv+l
  KIR66111.1 124 TVPARLLVPL 133
                 ****999875 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.2   5.4e-28   8.1e-25       1     128 [.     173     298 ..     173     300 .. 0.96
   2 ?    1.2   0.0      0.22   3.3e+02      45      67 ..     317     339 ..     305     341 .] 0.81

  Alignments for each domain:
  == domain 1  score: 87.3 bits;  conditional E-value: 5.4e-28
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeefd 98 
                 +vGl+   +A+a Gaev++   +++++ela++lG   ++++  a d+v +++e tgg g+ vvfe++Gs a +++a++ll+ +Grlvvv++  ++  +d
  KIR66111.1 173 PVGLLIGTVARAVGAEVTVLELDPHRRELAAELG-LSTLDP-AAvDVVRHVHEVTGGAGAAVVFEVSGSAAGVRTATDLLAVRGRLVVVAIHPNPPAVD 269
                 79********************************.789999.677**********************************************889888** PP

                 HHHHHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  99 lrnlllkeksilGsllgslreefkealdll 128
                 l +++ +e+ ++G+ ++  r++++ea++l+
  KIR66111.1 270 LHRVFWRELELIGVRVYE-RDDYAEAVRLV 298
                 ******************.********997 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.22
                 HHHHHHHHHTTTSSEEEEEESSC CS
  ADH_zinc_N  45 dlverikeltggegvdvvfecvG 67 
                 ++ e+ ++l  g+ v+v ++c G
  KIR66111.1 317 EVAEAFRALAAGGEVKVLVDCGG 339
                 5889999999999********88 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   2.4   8.1e-12   1.2e-08       4     211 ..     142     336 ..     140     337 .. 0.74

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 8.1e-12
  Glu_dehyd_C   4 gvLvEPisiveKaielaeasrsafewepesalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYvdsre.tpvdeipeas.. 98 
                  + LvEP++++   +  +++sr a     e a+v+GaG++GLL  ++ +a   g e v+vl+    p  + +l +elG    d +  + v ++ e++  
   KIR66111.1 142 AALVEPTAVA---VHDVRRSRLA---AGEHAVVIGAGPVGLLIGTVARA--VGAE-VTVLELD--P-HRRELAAELGLSTLDPAAvDVVRHVHEVTgg 227
                  5688888774...4445555544...5689*************777775..5665.8888852..2.3456888888777775431344555555411 PP

  Glu_dehyd_C  99 eemdlvvEaTGsakhafeaiealapnGvaaLlGvpedsevevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpeslldelvtkvvdldele 196
                      +v+E  Gsa+ +  a++ la  G  + + +  +      + +lhr ++ e   l+G    +r+ +++av+ ++   +   ++l+t+ v+l+e++
   KIR66111.1 228 AGAAVVFEVSGSAAGVRTATDLLAVRGRLVVVAIHPNP----PAVDLHRVFWRE-LELIGVRVYERDDYAEAVRLVH-GGQVPAERLITRIVPLTEVA 319
                  4678**************************99998765....455688887776.5689*999**********8665.5666799************* PP

  Glu_dehyd_C 197 eAfe..dddetiKtvve 211
                  eAf+      ++K+ v+
   KIR66111.1 320 EAFRalAAGGEVKVLVD 336
                  ***83344578888775 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.3   3.1e-09   4.7e-06      13     126 ..     216     329 ..     206     331 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 3.1e-09
                   THH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH..- CS
  ADH_zinc_N_2  13 dfe....aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGk..l 102
                   d++    ++tgg+g  vv++  g++a ++ + ++l+ +Grlv+++         ++pa +  +   +   l+ ++ +  +d  +e ++l+  G+   
    KIR66111.1 216 DVVrhvhEVTGGAGAAVVFEVSGSAAGVRTATDLLAVRGRLVVVAiH------PNPPAVDLHRVFWRELELIGVRVY-ERDDYAEAVRLVHGGQvpA 305
                   555566699******************9*******999***999944......444444444444455555556667.5555************433 PP

                   ---EEEEEEGGGHHHHHHHHHSS- CS
  ADH_zinc_N_2 103 rpvvdrvfpleeaaeAhrylesgr 126
                   +  ++r  pl+e+aeA+r+l++g 
    KIR66111.1 306 ERLITRIVPLTEVAEAFRALAAGG 329
                   57899***************9996 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.2   6.7e-07     0.001     131     177 ..     153     198 ..     125     265 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.7e-07
                  HHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 131 dsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrl 177
                  +++++ +l+   +++vv+G+G++G+ +  +++ +g+evt++e  ++ 
   KIR66111.1 153 HDVRRSRLAAG-EHAVVIGAGPVGLLIGTVARAVGAEVTVLELDPHR 198
                  44455555555.5****************************987765 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.3   3.2e-06    0.0048      30      75 ..     165     210 ..     150     244 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.2e-06
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCEC CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfv 75 
                  + +viG+G +Gl    +a+++ga+Vtvl+++p+r+e   +lg +++
   KIR66111.1 165 HAVVIGAGPVGLLIGTVARAVGAEVTVLELDPHRRELAAELGLSTL 210
                  579********************************99988887654 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   6.4e-06    0.0095      20      59 ..     160     199 ..     151     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.4e-06
                    --TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHH CS
  AdoHcyase_NAD  20 llaGkvavvaGyGdvGkGcaaslkglGarvivtevdPica 59 
                    l aG  avv+G G vG    +  +++Ga v+v e+dP   
     KIR66111.1 160 LAAGEHAVVIGAGPVGLLIGTVARAVGAEVTVLELDPHRR 199
                    679**********************************754 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.7   4.1e+03      10      25 ..      59      74 ..      58      84 .. 0.81
   2 !   16.5   0.4   6.1e-06    0.0091       1      33 [.     165     197 ..     165     218 .. 0.91
   3 ?   -1.6   0.1       2.8   4.2e+03      13      27 ..     317     333 ..     316     336 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.7
                HHHHHHHHHHHTTSEE CS
   Pyr_redox 10 iglElAgalaelgkkV 25
                ig E+Ag +ae g+ V
  KIR66111.1 59 IGHEMAGRIAEVGAGV 74
                8889999888887665 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 6.1e-06
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdk 33 
                 ++vv+G+G +gl  ++++++ g++Vtv+e  ++
  KIR66111.1 165 HAVVIGAGPVGLLIGTVARAVGAEVTVLELDPH 197
                 78**************************97765 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.8
                 HHHHHHHHTT..SEEEE CS
   Pyr_redox  13 ElAgalaelg..kkVtv 27 
                 E+A+a+++l+   +V+v
  KIR66111.1 317 EVAEAFRALAagGEVKV 333
                 99****99873346666 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   2.6e-05     0.039       1      29 [.     167     194 ..     167     201 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.6e-05
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEk 29 
                  ++iGaGP Gl +++ ++ +g  ++++lE 
   KIR66111.1 167 VVIGAGPVGLLIGTVARAVGA-EVTVLEL 194
                  79*******************.699**95 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.4e-05     0.051       2      31 ..     165     194 ..     164     200 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.4e-05
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-S CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllek 31 
                  + +viG+G+ Gl+    a++ g++V++le 
   KIR66111.1 165 HAVVIGAGPVGLLIGTVARAVGAEVTVLEL 194
                  579*************************95 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   7.7e-05      0.12       1      30 [.     168     197 ..     168     198 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.7e-05
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdr 30 
                    ++GaG  Gl++   ++  g++v++le  ++
     KIR66111.1 168 VIGAGPVGLLIGTVARAVGAEVTVLELDPH 197
                    8*************************8776 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011      0.17      30      80 ..     157     207 ..     140     219 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
                   SBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTC CS
  2-Hacid_dh_C  30 lgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgv 80 
                   +++  +g+   +iG+G +G  +  +++a+g++v++ +  ++++e ++elg+
    KIR66111.1 157 RSRLAAGEHAVVIGAGPVGLLIGTVARAVGAEVTVLELDPHRRELAAELGL 207
                   5566789999**********************9999888887775555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2551.18
//
Query:       KIR66112.1  [L=111]
Description: L-rhamnose 1-epimerase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-34  117.4   0.3    3.2e-34  117.2   0.3    1.0  1  rhaM      L-rhamnose mutarotase


Domain annotation for each model (and alignments):
>> rhaM  L-rhamnose mutarotase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.3   1.8e-38   3.2e-34       1     108 []       3     106 ..       3     106 .. 0.95

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 1.8e-38
        rhaM   1 RyaqvlklkpeaieeYkklHaevwpevlealkeagirnysIyldeegntLfailev.gddeeadaaaaaadpkvqeWwalmaklqeaapsaspakeeek 98 
                 Ry++v++l+p++ + Y +lHa+vwp v+++l+ea+irnysI+l  ++++Lf+++e+ g+d +ad++++a+dp+++eWw+l++++qe+  +  p+ ++++
  KIR66112.1   3 RYGWVIRLRPDHRDTYLRLHAAVWPGVEQTLREANIRNYSIFL--HRDLLFGYYEYvGEDHDADQRRIAEDPQTREWWKLTDPCQESLAE--PG-SGHW 96 
                 9*****************************************6..69***************************************8887..66.447* PP

        rhaM  99 wteleevFhl 108
                 w++++ev+hl
  KIR66112.1  97 WAPMHEVWHL 106
                 ********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 755.18
//
Query:       KIR66113.1  [L=441]
Description: fuconate dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-60  203.2   2.4    6.1e-60  202.5   2.4    1.3  1  MR_MLE_C  Enolase C-terminal domain-like
    2.9e-10   40.4   0.0    6.2e-10   39.3   0.0    1.5  1  MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N
  ------ inclusion threshold ------
      0.085   12.7   0.0       0.14   12.0   0.0    1.2  1  DUF3025   Protein of unknown function (DUF3025)


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.5   2.4     1e-63   6.1e-60       2     217 ..     201     414 ..     200     417 .. 0.92

  Alignments for each domain:
  == domain 1  score: 202.5 bits;  conditional E-value: 1e-63
                 HHHHHHHHHHHHT-SEEEEETSSSHHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGGGTESEEESSSSTTTHHHHHHHHHHHH..S CS
    MR_MLE_C   2 laeearelvaeqgfravKlkvggddvaedvervravreavgpgddvdlmvDanqawdlatAirvareleeldllwlEEPvppeddleglaelrara..s 98 
                 la+ ++e+v++ g+  +Klkvgg+ +a+dv+r+  +r+avgp++  +++vDanq w +++Air++rel+++d++w+EEP++p dd+ g+a++r+ a  +
  KIR66113.1 201 LARLCAEAVRD-GYGLIKLKVGGN-LADDVRRMGIARQAVGPDV--RIAVDANQIWGVPDAIRWMRELAAFDPYWIEEPTSP-DDVLGHAAVRK-AlaP 293
                 67888888887.********9997.***************8855..**********************99************.78********5.557* PP

                 SEEEESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCS.SHHHHHHHHHH..HHTTTTBEEEEEEGGGGHTSGCSBS CS
    MR_MLE_C  99 ipiaagEslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgs.gglglaaslhl..aaaipnllileyfldaelleeelle 194
                 +++a+gE+++++  f++ll+a+avd+vq+d++rv G++e ++++ la++fgvpv+pH+g+ g ++l+++l +   +a+++++  ++ ++ + + +e++ 
  KIR66113.1 294 VKVATGEHVHNAVMFKQLLQADAVDVVQIDACRVAGVNENLAILLLAAKFGVPVCPHAGGvGLCELVQHLAMfdFVALSGSTDDRSIEYVD-HLHEHFV 391
                 **********************************************************876899999999888877777777777777665.99***** PP

                 SSSEEETTEEECTSSSBTSSEB- CS
    MR_MLE_C 195 eplevedGrvtvpdgpGlGveld 217
                 +p++++ Gr+ +p++pG++ e+ 
  KIR66113.1 392 DPVRISGGRYLAPTAPGMSAEIV 414
                 *******************9986 PP

>> MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0     1e-13   6.2e-10      29     116 ..      36     135 ..      19     136 .. 0.93

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 1e-13
                 EEEEEEECTTEEEEEEEE-STTGHHHHHHHHHHHHHHHHTTSBTTHHHHHHHHHHHHCSS.............CHHHHHHHHHHHHHHHHHHTTSBHHH CS
    MR_MLE_N  29 vlvkietseGvvGigeatsvggraetikaelddhlapllvgkdaanisdlaqllkravlg.............nmsAkaaidmAlwDlkakalnlplad 114
                 + v ++ts G +G g  ++vg r  +i+++  ++lap++vg+  +++ +    l+r  +g               +A+ ++  A+wDl+a++++ pl++
  KIR66113.1  36 AYVILRTSSGATGYGLVFTVG-RGTEIQVAAVQSLAPMVVGQSVDELTADPGALARRLVGdsqirwlgpekgvVHMAAGGLVNAVWDLAARRAGKPLWK 133
                 44556789*************.9999**9999****************9999999999999************9************************* PP

                 HT CS
    MR_MLE_N 115 Ll 116
                 Ll
  KIR66113.1 134 LL 135
                 *8 PP

>> DUF3025  Protein of unknown function (DUF3025)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.3e-05      0.14      88     168 ..     248     330 ..     241     349 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.3e-05
     DUF3025  88 dealaealrafdWkelfveeReaweeeiev..vvfGHallekllqpykaltakalvveveeevfalsaaeqaaevdallaeel 168
                  ++++ + +a +W + + +    w ee +    v+GHa + k+l+p k  t++ ++ +v  + + +++a    ++da+ ++ +
  KIR66113.1 248 ANQIWGVPDAIRWMRELAAFDPYWIEEPTSpdDVLGHAAVRKALAPVKVATGEHVHNAVMFKQLLQADAVDVVQIDACRVAGV 330
                 5566667777788888888888885443331269*********************9999877777777788888998876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3197.67
//
Query:       KIR66114.1  [L=346]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-42  143.0  45.6    9.5e-42  143.0  45.6    1.4  2  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.3      0.21   3.8e+03      57     224 ..      39      48 ..      25      53 .. 0.48
   2 !  143.0  45.6   5.3e-46   9.5e-42       1     268 []      59     334 ..      59     334 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.21
  BPD_transp_2  57 lallvallvgaavglllgllvlrlkvdeliitllllsvlvgltlllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtr 153
                   +                                                                                                
    KIR66114.1  39 A------------------------------------------------------------------------------------------------ 39 
                   2................................................................................................ PP

  BPD_transp_2 154 fGralravgeneeaaralGinvkrvklltfvisgalAglaGallalllgsippnigvglgfnaiaavvlGg 224
                                                                                 +ia++++G 
    KIR66114.1  40 --------------------------------------------------------------IIAVAIVGS 48 
                   ..............................................................233333333 PP

  == domain 2  score: 143.0 bits;  conditional E-value: 5.3e-46
  BPD_transp_2   1 gilnlltlaailaiaAlGlalvfgiaGvinlghggfmalG.ayvaalllalllsl........lllallvallvgaavglllgllvlrlkvdeliit 88 
                   +i+n+l + + +ai++l++++v  i+G ++l+ ++ ++l+ +++a+l++   l            +a++v llvga+vg+++gll++r++++ +i+t
    KIR66114.1  59 NIINVLQSMSEIAILVLAQTIVL-ITGKMDLSLESTFGLApGIAAWLIVDPALTRglglgvlpDGWAIPVVLLVGALVGAFNGLLIVRFGLNGFIVT 154
                   689********************.****************9999999999988889*****99899******************************* PP

  BPD_transp_2  89 llllsvlvgltlllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvi 185
                   l++l++l+gl+      ++sg ++    +e ++  g  ++f++ +  ++ lll +a +++l +tr Gral+a+g+ne+aara+Gi+++rv +++ ++
    KIR66114.1 155 LGMLIILRGLLT-----GISGGQTFFALPESMTYLGSASWFGVPASIWVSLLLFAAGVVVLGHTRAGRALYAIGGNEDAARAAGIRTDRVLWIALIV 246
                   ***********9.....88888888899999999999999999999999************************************************ PP

  BPD_transp_2 186 sgalAglaGallalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   +++lA+laG+l++ +l+++p   g g++f+++aa+v+Gg+      gs++g++ G l++ ++ +  ltl g+p +++++l ga+++++l
    KIR66114.1 247 ASVLAALAGLLISGRLAAVPSAQGSGAIFQVFAAAVIGGVslnggrGSVFGAFTGVLLLFMIIN-VLTLAGVPAQWTNFLNGAVILVAL 334
                   **********************************************************999999.9999999**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2397.04
//
Query:       KIR66115.1  [L=513]
Description: multidrug ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-42  145.9   0.0    3.5e-25   89.1   0.0    2.2  2  ABC_tran     ABC transporter
    1.2e-06   28.6   0.2     0.0015   18.4   0.0    2.5  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
      7e-05   22.4   1.2        1.1    8.7   0.0    3.2  3  SMC_N        RecF/RecN/SMC N terminal domain
     0.0006   19.5   1.9     0.0079   15.9   0.1    2.5  2  AAA_29       P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.011   15.7   0.1      0.033   14.1   0.1    1.8  1  RsgA_GTPase  RsgA GTPase
      0.011   15.8   0.1      0.062   13.4   0.1    2.3  2  MMR_HSR1     50S ribosome-binding GTPase
      0.024   14.4   6.4       0.08   12.7   0.1    3.1  3  AAA_30       AAA domain
       0.11   12.3   0.0        1.2    9.0   0.0    2.5  2  HTH_39       Helix-turn-helix domain
       0.15   11.7   0.2        4.2    7.0   0.0    2.2  2  STAS         STAS domain
       0.25   10.6   4.7        4.6    6.5   0.3    2.8  3  Zeta_toxin   Zeta toxin
       0.91    9.1  11.8      0.079   12.5   1.8    3.5  3  AAA_25       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0   2.2e-28   3.5e-25       8     137 .]      42     185 ..      35     185 .. 0.94
   2 !   54.8   0.0   8.2e-18   1.3e-14       4     136 ..     288     439 ..     286     440 .. 0.85

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 2.2e-28
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHHTCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren.................esdeeieka 88 
                 +++ge++a+vG+nGaGKStL+++l+gl   ++G + +dg++     ++  +r++++++ q++++ p+ltv+en                   ++e+e++
  KIR66115.1  42 VRRGETHALVGRNGAGKSTLVSILTGLQAADAGAVAFDGRPAPPlGDRDAWRQRVACVYQKSTIIPTLTVAENlflnrhargrsglirwsSLRREAEQL 140
                 789**************************************99999********************************999999999987777889999 PP

                 HHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  89 lsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 l++ + + +  +++    s+L   q+q v++aral   +++++lDEpta
  KIR66115.1 141 LATWSVDVDVRQPA----STLTVEQRQFVEIARALSFGARFIILDEPTA 185
                 99999888777777....*****************************97 PP

  == domain 2  score: 54.8 bits;  conditional E-value: 8.2e-18
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH...............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx...............xxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren...............esde 83 
                  sl+ ++ge+v+i G  G+GK  +++++ gl +p+ G++ l ++ l+       l++ +g +pq+   + l p ++++en                s +
  KIR66115.1 288 FSLEARAGEVVGIAGGGGSGKVEVAEAIVGLARPAGGTVALGDRVLRPgSVPDALDAGVGLVPQDrhrEGLVPSMSIAENvtmtvphrvgrygliSSAR 386
                 689999*********************************9999988887788899**********99999****************9999999974444 PP

                 C...HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 x...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 e...iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +   + + ++ l +k    +  +  ++ LSgG +q+v++ ral+++p++l+l  pt
  KIR66115.1 387 RdalARDTIAGLAIKA---SGPHVPAADLSGGNQQKVVMGRALASDPRVLVLITPT 439
                 4222555555555544...5555567************************996665 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   9.2e-07    0.0015       3      25 ..      49      71 ..      48      95 .. 0.78
   2 !    7.4   0.1     0.002       3.3     258     298 ..     174     215 ..     162     219 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 9.2e-07
      AAA_21  3 vliGpNgsGKSnLLdaldllarl 25
                +l+G+Ng+GKS+L  +l +l+ +
  KIR66115.1 49 ALVGRNGAGKSTLVSILTGLQAA 71
                79******************975 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.002
      AAA_21 258 g.sllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 g +++++DEp + L+ + + rl+  +++l+++g+ +++ +H 
  KIR66115.1 174 GaRFIILDEPTAQLDAAGINRLFARIRDLRAHGVTFLFISHH 215
                 4489*************************************6 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0011       1.8      26      41 ..      47      62 ..      36      70 .. 0.85
   2 !    8.7   0.0   0.00065       1.1     160     208 ..     176     226 ..     168     237 .. 0.79
   3 ?    2.7   0.1     0.044        72      26      44 ..     297     315 ..     285     320 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0011
                EEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnll 41
                  a+vG+NG+GKs l+
  KIR66115.1 47 THALVGRNGAGKSTLV 62
                6799*********997 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00065
                 SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SS.HHHCCC-SCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxx RF
       SMC_N 160 plyllDeidaaLDeknvkkvaellkekskn.aQfivislr.eemlekadkl 208
                  + +lDe  a+LD++ ++++  +++  + + + f+ is++ +e++e +d++
  KIR66115.1 176 RFIILDEPTAQLDAAGINRLFARIRDLRAHgVTFLFISHHlQEIYELCDRV 226
                 599**********************98877788998888725566666655 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.044
                 EEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAi 44 
                 +  i G  GSGK  + +Ai
  KIR66115.1 297 VVGIAGGGGSGKVEVAEAI 315
                 66799*************9 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   4.8e-06    0.0079      22      39 ..      44      62 ..      36      77 .. 0.80
   2 ?    2.1   0.2     0.098   1.6e+02      23      46 ..     295     319 ..     282     326 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.8e-06
      AAA_29 22 kg.atlltGpsGsGKSTll 39
                +g ++ l+G++G+GKSTl+
  KIR66115.1 44 RGeTHALVGRNGAGKSTLV 62
                455899************9 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.098
      AAA_29  23 g.atlltGpsGsGKSTllDAiqalL 46 
                 g ++ ++G  GsGK  +  Ai  l 
  KIR66115.1 295 GeVVGIAGGGGSGKVEVAEAIVGLA 319
                 457889********87777776665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1     2e-05     0.033      98     129 ..      44      75 ..      34      80 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2e-05
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktge 129
                  +++t +lvG  G+GKStL+  l++ + +  g+
   KIR66115.1  44 RGETHALVGRNGAGKSTLVSILTGLQAADAGA 75 
                  46899*****************9977666665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.8e-05     0.062       3      26 ..      49      73 ..      47      81 .. 0.79
   2 ?   -1.5   0.0       1.6   2.7e+03      50      83 ..     186     211 ..     145     252 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.8e-05
                EEEESTTSSHHHHHHHHHTS.TEEE CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge.kaiv 26
                a+vGr  +GKStL++ ltg  +a +
  KIR66115.1 49 ALVGRNGAGKSTLVSILTGLqAADA 73
                89****************9534454 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.6
                 EEECGGCSSHHHHHHHHHHHHHHHHC..TSEEEEEE CS
    MMR_HSR1  50 lvDtpGliegaseekglgkaflalee..adlillvv 83 
                  +D +          g+++ f+++++  a+ + +++
  KIR66115.1 186 QLDAA----------GINRLFARIRDlrAHGVTFLF 211
                 23333..........344444433332233333333 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   4.9e-05      0.08      18     114 ..      45     201 ..      38     246 .. 0.73
   2 ?    3.3   0.7     0.035        58      19      50 ..     296     327 ..     288     334 .. 0.88
   3 ?   -1.4   0.1      0.97   1.6e+03      12     120 ..     425     465 ..     394     470 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.9e-05
      AAA_30  18 drvavltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvLa..............eelgieastiakllkrlk.................... 81 
                   +++l+G+ G+GK+t+++ l+ + +a+ g    ++A  g+ A  L+              +++ i++ t+a+ l  ++                    
  KIR66115.1  45 GETHALVGRNGAGKSTLVSILTGLQAADaG----AVAFDGRPAPPLGdrdawrqrvacvyqKSTIIPTLTVAENLFLNRhargrsglirwsslrreaeq 139
                 45789****************999999955....66777777777774444444444444457778888888877777777888888888777777777 PP

      AAA_30  82 ............................grarlepg.tllivDE.agmvdtkqlaallkaaek 114
                                             +  +l+ g + +i DE ++ +d++ +++l++++++
  KIR66115.1 140 llatwsvdvdvrqpastltveqrqfveiA-RALSFGaRFIILDEpTAQLDAAGINRLFARIRD 201
                 77777777777777777777777777653.233444477777774445577777777777766 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.035
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrvi 50 
                  v+ + G+ G+GK  + +a++ +++ agg+v+
  KIR66115.1 296 EVVGIAGGGGSGKVEVAEAIVGLARPAGGTVA 327
                 488999*******************9999986 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.97
      AAA_30  12 alltsgdrvavltGpAGt...GKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvdtkqlaa 107
                 al+++++ ++++t  AG     K t+l++++                                                                    
  KIR66115.1 425 ALASDPRVLVLITPTAGVdvrSKQTLLGVVE-------------------------------------------------------------------- 455
                 4444444455555555542223444443333.................................................................... PP

      AAA_30 108 llkaaekagakvi 120
                     ++++g++v+
  KIR66115.1 456 ---DVRSRGTTVL 465
                 ...3333344444 PP

>> HTH_39  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00072       1.2      24      43 ..     189     208 ..     184     229 .. 0.86
   2 ?    0.1   0.0      0.42   6.8e+02      56      69 ..     371     383 ..     362     384 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00072
      HTH_39  24 elditrlaaRIkeLrekGye 43 
                   +i rl aRI++Lr++G  
  KIR66115.1 189 AAGINRLFARIRDLRAHGVT 208
                 5799**************75 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.42
      HTH_39  56 GrthrrVarYsLae 69 
                 +++h rV+rY L++
  KIR66115.1 371 TVPH-RVGRYGLIS 383
                 5678.*****9976 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0026       4.2      48      89 ..     175     215 ..     113     240 .. 0.80
   2 ?    2.4   0.1     0.068   1.1e+02      60      87 ..     441     468 ..     427     480 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0026
                 -SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES-- CS
        STAS  48 lkslildlsavsfiDssGvraLkeilkelkrigvevvlvnik 89 
                  +++ild +    +D +G+  L   +++l+++gv++++ + +
  KIR66115.1 175 ARFIILD-EPTAQLDAAGINRLFARIRDLRAHGVTFLFISHH 215
                 4677777.666789*********************9998765 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.068
                 EE-HHHHHHHHHHHHHHHHTT-EEEEES CS
        STAS  60 fiDssGvraLkeilkelkrigvevvlvn 87 
                  +D+ + ++L  ++++++++g +v++v+
  KIR66115.1 441 GVDVRSKQTLLGVVEDVRSRGTTVLVVS 468
                 6899999*****************9997 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2    0.0083        13      21      48 ..      50      77 ..      43      80 .. 0.77
   2 ?   -2.2   0.0       1.3   2.1e+03     151     190 ..     197     234 ..     173     242 .. 0.78
   3 ?    6.5   0.3    0.0028       4.6      18      50 ..     297     329 ..     287     337 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0083
  Zeta_toxin 21 lgGqpGAGKselaellkdelerqgnvvr 48
                l+G  GAGKs+l + l+   +++ ++v 
  KIR66115.1 50 LVGRNGAGKSTLVSILTGLQAADAGAVA 77
                89**********9998766555555555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.3
  Zeta_toxin 151 gRlvpkeehdeafeglresvealeeekqldrvkikdrdgk 190
                 +R+ + + h  +f  ++  ++++ e  ++drv++++ +++
  KIR66115.1 197 ARIRDLRAHGVTFLFISHHLQEIYE--LCDRVTVFRDARH 234
                 6888888888888889999999888..7799999988774 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0028
  Zeta_toxin  18 lillgGqpGAGKselaellkdelerqgnvvrld 50 
                 ++ ++G+ G+GK e+ae++    +++g+ v l 
  KIR66115.1 297 VVGIAGGGGSGKVEVAEAIVGLARPAGGTVALG 329
                 5679**************999888888888775 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.8   4.8e-05     0.079      30     188 ..      42     214 ..      38     217 .. 0.65
   2 ?   -3.4   0.6       3.8   6.2e+03      32      46 ..     294     308 ..     292     312 .. 0.88
   3 ?    0.5   0.1      0.24   3.9e+02      59      97 ..     446     487 ..     437     511 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.8e-05
      AAA_25  30 lpagelallaGapgtGKttlaldlalava..tGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal............................. 97 
                 +++ge+++l+G+ g+GK+tl++ l    a   G      va   ++   +   +++d +r+R+++v ++                              
  KIR66115.1  42 VRRGETHALVGRNGAGKSTLVSILTGLQAadAGA-----VAFDGRPAPPL---GDRDAWRQRVACVYQKStiiptltvaenlflnrhargrsglirwss 132
                 689****************986554333313222.....22233333333...4666777777777777667777755555566666666666666666 PP

      AAA_25  98 ..rddarllvldlagveslpLfakdrggtlltadvdaleaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188
                   r+ ++ll+++  +v +++++++ +  t+ ++++ ++++a+    g+r++++D  ++ l     +++ +++l+++++++ r++g+++l++ H
  KIR66115.1 133 lrREAEQLLATW--SV-DVDVRQPASTLTVEQRQFVEIARALSF--GARFIILDEPTAQL-----DAAGINRLFARIRDL-RAHGVTFLFISH 214
                 543344444443..33.667777777777777778888877766..69999999766644.....556667899999998.688888888877 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.8
      AAA_25  32 agelallaGapgtGK 46 
                 age++ +aG +g+GK
  KIR66115.1 294 AGEVVGIAGGGGSGK 308
                 799999********9 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.24
      AAA_25  59 tGkpwlg...pvapeqgkVlyvsaEdsedelrrRlravgeal 97 
                 + + +lg   +v+++  +Vl+vs E +  ++  R+  +++ +
  KIR66115.1 446 SKQTLLGvveDVRSRGTTVLVVSDELDDLRICDRVLVMFQGR 487
                 556667777788899999****99999989999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3537.51
//
Query:       KIR66116.1  [L=356]
Description: ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-51  174.1   0.4    4.8e-51  173.8   0.4    1.1  1  Peripla_BP_4  Periplasmic binding protein domain
    1.6e-09   37.6   0.0    2.1e-09   37.3   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    9.4e-05   22.2   0.7    0.00025   20.8   0.4    1.8  2  Peripla_BP_6  Periplasmic binding protein
    0.00088   19.6   0.0     0.0025   18.2   0.0    1.7  2  Peripla_BP_3  Periplasmic binding protein-like domain
  ------ inclusion threshold ------
       0.52   10.4   2.1        1.1    9.3   2.1    1.6  1  CytB6-F_Fe-S  Cytochrome B6-F complex Fe-S subunit


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8   0.4   1.3e-54   4.8e-51       2     257 ..      43     301 ..      42     302 .. 0.95

  Alignments for each domain:
  == domain 1  score: 173.8 bits;  conditional E-value: 1.3e-54
                   EEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEE CS
  Peripla_BP_4   2 gvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerla 98 
                   gv ++ ++ +f+++  + + + a+elg+ev+ + +++nd+a  +++ +++ ++gv+g+++ap d++a+ap+l+++++++IpVv++d+   ++g++  
    KIR66116.1  43 GVDYPRSDTDFWNSYIKYVPKSAEELGVEVKTT-NSQNDVANLISNAQTFMSQGVKGVVMAPQDTAAIAPTLAQLENRKIPVVTIDTR-PDTGKVFM 137
                   6667888999*********************96.******************************************************.******** PP

                   EEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH.-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSCC CS
  Peripla_BP_4  99 yvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke.ypgikivaevaganwdaekaqqalealltanp.ldgilaandg 193
                   +v +dn a+G+ + + l+ klggk gkvv+l+G +++ n ++r+e+f++ + + +pgik+ +e  +++w+a+ a ++l++ ++ +p ++gi+  ++ 
    KIR66116.1 138 VVRADNRAYGTKACQFLGTKLGGK-GKVVMLQGGLDSINGRDRTEAFNECMGKeFPGIKVFGE--ATDWKADVAASKLQTRFASDPdIKGIYMQSSF 231
                   ************************.**************************999********6..88****************9855********** PP

                   HHHCHHHHHHHTTT.....TSTEE...EEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT- CS
  Peripla_BP_4 194 maegalealeaagl.....agkvv...vtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkGk 257
                   +  g l+ l++ gl     +  ++   v+ +D+ pe l+ i dG idatv+q++  ++++++e a+a+++Gk
    KIR66116.1 232 ALSGTLQILKQRGLqvpptD--PKhvfVVSNDGIPEELKNIGDGLIDATVSQPADLYARYGLEYAKAAIEGK 301
                   **************776432..33678*******************************************99 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   5.7e-13   2.1e-09       4     208 ..      42     248 ..      39     290 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 5.7e-13
                   EEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GG..HHHHHHHHHHT-EEEEESS--B-TTTS-E CS
  Peripla_BP_1   4 lglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdts..fdditakaesgipvialedaidapdgvPc 97 
                   +g+ +p +d+ f+ + +k + k a+e+gv+v+  + +++   + + ++   ++g++g+++a +dt    + + + ++  ipv+ ++   d    v +
    KIR66116.1  42 VGVDYPRSDTDFWNSYIKYVPKSAEELGVEVKTTNSQNDVANLiSNAQTFMSQGVKGVVMAPQDTAaiAPTLAQLENRKIPVVTIDTRPDTG-KVFM 137
                   7888****************************988776666557999**************88887777999999988**********9999.7777 PP

                   EEE-HHHHHH.HHHHHHHHHHHHHT.GEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHH..HHHHHHHHHTT-TT-SEEE-SSHH CS
  Peripla_BP_1  98 vipddtqage.estqkLiaeghkrp.iallegpesaltakervqGflaalaeaGlevkdvhvalgsndied..aaealnelleshPeidaivainde 190
                   v+ +d++a+  ++ q L  +  +++ +++l+g   +   + r++ f + +   G e+   +v     d ++  aa+ l+  + s P+i+ i+ ++  
    KIR66116.1 138 VVRADNRAYGtKACQFLGTKLGGKGkVVMLQGGLDSINGRDRTEAFNECM---GKEFPGIKVFGEATDWKAdvAASKLQTRFASDPDIKGIYMQSSF 231
                   77666666544******999888888988888888888888996666555...5556666666555555442278889999**************** PP

                   HHHHHHHHHHHTT.--GG CS
  Peripla_BP_1 191 aalGavlalkkeGrlkik 208
                   a  G  + lk++G l+ +
    KIR66116.1 232 ALSGTLQILKQRG-LQVP 248
                   *************.6554 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.4   0.00013      0.46     143     210 ..      49     113 ..      17     114 .. 0.80
   2 !   20.8   0.4     7e-08   0.00025      43     236 ..      70     271 ..      57     299 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00013
                   ESSHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHH CS
  Peripla_BP_6 143 adyafgregiaalkaaakaaGgevvgeepvplgttdfsaqvlqikaagadavllagtgadlaallkaa 210
                   +d+ f +++i+ + ++a+++G+ev  ++  + + +++ + ++ ++++g++ v++a  ++d+aa++ ++
    KIR66116.1  49 SDTDFWNSYIKYVPKSAEELGVEV-KTTNSQNDVANLISNAQTFMSQGVKGVVMA--PQDTAAIAPTL 113
                   6889999****************8.688888888999999***********9985..88888877665 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 7e-08
                   EEEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHH...HT-EEEESS-HHCCTTSTTEEESS--HHHHHHHHHHHHHHHTTSC CS
  Peripla_BP_6  43 ielverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlak...dgvpvigpagltgekcspyvfslgpsysaqasalveylakelggk 136
                   +e+ +   ++d++  +++a+ +++ +gv+++v +    ++aa+a++la+   +++pv+++  +t  ++   + +++++++a+++ + ++l ++lggk
    KIR66116.1  70 VEVKTTNSQNDVANLISNAQTFMS-QGVKGVVMAP--QDTAAIAPTLAQlenRKIPVVTI--DTRPDTGKVFMVVRADNRAYGTKACQFLGTKLGGK 161
                   677788899***************.******9984..778999998888888******98..44444555555889*******************76 PP

                   .EEEEE..EESSHHHHHHHHHHHHHHHCC..TEEEEEEEEE-TTHHHHHHHHHHHHTTT-SE..EEEESSHHHHHHHHHHHHHTT-S.....SSCEE CS
  Peripla_BP_6 137 .kvalv..yadyafgregiaalkaaakaa..Ggevvgeepvplgttdfsaqvlqikaagada..vllagtgadlaallkaaaeaGld.....akril 221
                    kv+++  + d+  gr+  +a+ + + ++  G++v ge  ++  ++  ++ ++   a+ +d+  +++++ +a l   l+ +++ Gl+     +k++ 
    KIR66116.1 162 gKVVMLqgGLDSINGRDRTEAFNECMGKEfpGIKVFGE-ATDWKADVAASKLQTRFASDPDIkgIYMQSSFA-LSGTLQILKQRGLQvpptdPKHVF 256
                   67777633377777777777766666555445555543.333333333333333335566655555444444.444444444444332222256666 PP

                   EECCC-CHHHHHHHH CS
  Peripla_BP_6 222 lvswsgseedlkalg 236
                   +vs +g +e+lk +g
    KIR66116.1 257 VVSNDGIPEELKNIG 271
                   666666666666665 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.2   4.2e+03      38      98 ..      66     119 ..      57     123 .. 0.52
   2 !   18.2   0.0     7e-07    0.0025      23     155 ..     173     309 ..     159     319 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.2
                   TTSSS-EEEEE-S-SS-SSHHHHH......HHHHHCC-SEEEEESSCCHHHHHHHHHCCTT- CS
  Peripla_BP_3  38 eelglplnetvvaaddpaaaaaaraalll.qalklaalPtAviaasDelAlgvlqalreagl 98 
                   eelg+++++t  ++d +++ + a+   ++ q +      ++v+ a   +A+ + + ++ ++ 
    KIR66116.1  66 EELGVEVKTTNSQNDVANLISNAQT--FMsQGV------KGVVMAPQDTAAIAPTLAQLENR 119
                   6666776666666665555444444..333333......55555544444444444444444 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 7e-07
                   -HHHHHHHHHHHHHH.TT.SSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SE..EEEESSCCHHHHHHHHHCCTT--TT....TTEEEEBSS- CS
  Peripla_BP_3  23 asasderergfrqal.ee.lglplnetvvaaddpaaaaaaraalllqalklaalPt..AviaasDelAlgvlqalreaglrvP....edlsvigfdd 111
                   + + ++r+++f++++ +e  g+++    ++++ + aa+ ++ +        a+ P+  +++ +s  +  g lq l+++gl+vP    + + v++ d+
    KIR66116.1 173 SINGRDRTEAFNECMgKEfPGIKVFGEATDWKADVAASKLQTRF-------ASDPDikGIYMQSSFALSGTLQILKQRGLQVPptdpKHVFVVSNDG 262
                   567899*********64413555555555444444444444433.......3377566************************765447799999999 PP

                   -SCC.CSSSS--..EEEE--HHHHHHHHHHHHHHHHTT---S--EEE CS
  Peripla_BP_3 112 sela.alssPpl..TtvrqpleelGraaaellldllegekappeqvl 155
                   +++  +     l   tv+qp++  +r  +e   + +eg+  +p +++
    KIR66116.1 263 IPEElKNIGDGLidATVSQPADLYARYGLEYAKAAIEGKTFQPGPTE 309
                   98877766666789999999999999999999999999888887776 PP

>> CytB6-F_Fe-S  Cytochrome B6-F complex Fe-S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.1   0.00031       1.1       6      25 ..       1      24 [.       1      26 [. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00031
  CytB6-F_Fe-S  6 msrRqllN....lllvGaialtaa 25
                  m+rR+ll+    lll++++alta+
    KIR66116.1  1 MNRRNLLGtgltLLLGATAALTAG 24
                  9*****8766669*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2609.14
//
Query:       KIR66117.1  [L=751]
Description: alpha-L-fucosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-89  298.3   1.6    1.3e-88  297.8   1.6    1.2  1  Alpha_L_fucos    Alpha-L-fucosidase
    2.3e-24   86.0  29.0    8.3e-11   42.5   3.0    4.0  5  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    3.3e-09   37.1   3.8    9.6e-09   35.6   2.6    2.4  2  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    3.2e-05   24.4   0.0    7.9e-05   23.2   0.0    1.7  1  Fucosidase_C     Alpha-L-fucosidase C-terminal domain
    5.1e-05   23.4   0.0    9.7e-05   22.5   0.0    1.5  1  Crystall         Beta/Gamma crystallin
    6.8e-05   22.5   3.9    0.00016   21.3   3.9    1.7  1  TAT_signal       TAT (twin-arginine translocation) pathway si
  ------ inclusion threshold ------
      0.042   13.0   0.0       0.07   12.3   0.0    1.2  1  DUF1464          Protein of unknown function (DUF1464)
       0.35   10.9   1.6       0.75    9.9   0.9    2.0  2  CytB6-F_Fe-S     Cytochrome B6-F complex Fe-S subunit


Domain annotation for each model (and alignments):
>> Alpha_L_fucos  Alpha-L-fucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.8   1.6   5.9e-92   1.3e-88      12     350 .]      41     392 ..      32     392 .. 0.88

  Alignments for each domain:
  == domain 1  score: 297.8 bits;  conditional E-value: 5.9e-92
                    -SSS-SSSSS--SHHH.HHHHHH-EEEEE--SGGGTTT..T-GGGHHHHTT--HH.................HHHGGG..............GG-- CS
  Alpha_L_fucos  12 ekyeptwesldkrklp.ewFrdaKfGifiHWGlysvpaageaseWyarnmkeekekkvvkfhkkkYg..eefeYkdla..............keFk 90 
                    ++y+++w+s+ +++++ ewF+daKfGi+ HWG++svpa  +a+eWy rnm+++ +   +++hk+ Yg  + + Y++++              ++++
     KIR66117.1  41 TSYSESWASVGQHPAAaEWFQDAKFGIYYHWGVFSVPA--FANEWYPRNMYNNGS-GENNHHKSVYGdpSVWPYHNFIngandkagrfvqfaPKLR 133
                    68**********76554*********************..66***********88.99*********9999*****77777777777744446666 PP

                    -TT..--HHHHHHHHHHHT-SEEEEEEE-TT--BSS--TT-S-BGGG.ST-S-HHHHHHHHHHHTT-EEEEEEESS-TT-TT--SS--SHHHHHHH CS
  Alpha_L_fucos  91 aek..FdpeewaklfkaaGakYvvltakHHdgfalwdskvsdwnsvdagPkrDivkelakavrkeglkfglyysladwknpdyyedkkkeedrkte 184
                    ++   Fdp+ewa+lf +aGak++ ++a+HHdgf++w+s+v++wnsv +gP+ D++k  ++a+r++glk+ +++++a  ++  y++  +++ ++  +
     KIR66117.1 134 SAGgnFDPNEWAQLFVDAGAKFAGPVAEHHDGFSMWNSQVNEWNSVAKGPRLDLLKLHTDAIRARGLKVLVAMHHAFNFTGFYQWAPQQSDASLRK 229
                    55478***********************************************************************66666666554443333222 PP

                    H.........HHHHHHHHHHHHHHHHSTTEEEEEES--SHH..........HHTTHHHHHHH..HHHHHHHSTT..-EEBGGG-B-TTSSBBEEBS CS
  Alpha_L_fucos 185 kkek...kskkykektlnqlkelvtkYkpdilwfDgewekke.........eyynedwkseeelaklykelspgdevlvndrlgkkeaedyqtper 268
                            ++  ++ ++++l+e++++ +pdi+w D+++++ +         +yyn+++++++e++++yk+  +    +v d            +er
     KIR66117.1 230 L--YgqlGTAAEEQLWYDKLREIIDQSQPDIIWQDFDLRRISeaqrlkflaYYYNRAVAWDKEVVATYKDGLES-GGAVFD------------YER 310
                    2..13353344489*************************98899999999999999****99999999995444.799999............9** PP

                    S---T-GGG-EEEEE-SB.S--S--S-GS-B--HHHHHHHHHHHHHTTEEEEEEE---TTSS--HHHHHHHHHHHHHHHHHGG CS
  Alpha_L_fucos 269 glpkelkakpWetcttig.ksWgYkrneeeyksakeliklLvdivskgGnlLLnigptadGsipeeeeerLkeiGkWlkvnge 350
                    g p++l++ +W t+++i+ +sW+Y+++   y++ ++++++L+d vsk+Gn++Lni+p adG+ip  ++++L+ iG++l++ ge
     KIR66117.1 311 GGPADLRTPYWLTDDSISsSSWCYTTG-IGYYTLNQMLHSLIDRVSKNGNMVLNIAPMADGTIPSGQQTILRGIGDYLRRFGE 392
                    ***************************.***************************************************9998 PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.3   1.2e+04      57      67 ..     336     346 ..     303     370 .. 0.63
   2 ?   -2.3   0.0       3.4   7.7e+03      35      65 ..     570     597 ..     548     611 .. 0.66
   3 !   42.5   3.0   3.7e-14   8.3e-11      12      88 ..     615     689 ..     607     690 .. 0.91
   4 !   39.0   5.7   4.5e-13     1e-09      33      89 .]     681     736 ..     678     736 .. 0.93
   5 !   33.6   4.6   2.2e-11     5e-08       2      56 ..     697     750 ..     696     751 .] 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.3
                      CESSEEEEEET CS
  RicinB_lectin_2  57 tgdgtyrivnk 67 
                      tg g+y++  +
       KIR66117.1 336 TGIGYYTLNQM 346
                      33344444433 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.4
                      TTEEEEEE-TTT-GGCEEEEECCESSEEEEE CS
  RicinB_lectin_2  35 nganvqqwtcsgaanqqWrledtgdgtyriv 65 
                      +g +++ +++++   + W+++  g ++  ++
       KIR66117.1 570 AGHQLVGYANDNFSGTSWTFT--G-DNADLR 597
                      566667777677777777763..2.233344 PP

  == domain 3  score: 42.5 bits;  conditional E-value: 3.7e-14
                      TTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEE CS
  RicinB_lectin_2  12 dgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqq 88 
                        y +i+nv +g++Ld  g+ ++ g  + qwt++++an qW+l+d+g+g+ rivn+ +g+v+d   g t+nG++ qq
       KIR66117.1 615 ATYQRIVNVTNGLALDSGGNVAS-GSPLKQWTWDSSANLQWQLVDLGTGYHRIVNRTNGMVVDGF-GLTTNGAAAQQ 689
                      56889***********9877776.9**************************************99.999****9998 PP

  == domain 4  score: 39.0 bits;  conditional E-value: 4.5e-13
                      BCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  33 tanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      t+nga++qq +++g+++qqW+++d+g+  yri n+a+g+vLd   g+ a+G++v qw
       KIR66117.1 681 TTNGAAAQQAAWNGGNSQQWQVTDQGNRRYRIANRATGLVLDGG-GQVASGSTVKQW 736
                      6799**********************99**************87.666********9 PP

  == domain 5  score: 33.6 bits;  conditional E-value: 2.2e-11
                      CGEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEEC CS
  RicinB_lectin_2   2 nQqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrled 56 
                      +QqW+++++g+  y+i n+a+g+vLd  g+ ++ g +v qw+++g++n +W++++
       KIR66117.1 697 SQQWQVTDQGNRRYRIANRATGLVLDGGGQVAS-GSTVKQWSWDGSTNLLWTITT 750
                      8*****8788889*************9888876.9*****************965 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.2     5e+03      80      96 ..     584     600 ..     566     607 .. 0.61
   2 !   35.6   2.6   4.3e-12   9.6e-09       2     127 .]     617     746 ..     616     746 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.2
                     GGCEEEETTTTEEEETT CS
  Ricin_B_lectin  80 nqrWefdkdgtqirhkk 96 
                        W+f+ d+  +r++ 
      KIR66117.1 584 GTSWTFTGDNADLRNTG 600
                     44566665555555554 PP

  == domain 2  score: 35.6 bits;  conditional E-value: 4.3e-12
                     EEEEEETTTGEEEEETTCTTSTEBEEEEE-TSCCGGGEEEEE..TTSEEEETT..TTEEEEES...SSSTTSBEEEEETTTTSGGGCEEEETTTT CS
  Ricin_B_lectin   2 sgeirnvasgkCLdvegeskagapvglydChgskgkQlwtlt..kdgeirska.qselCldvs...staegakvvlakChkgkgnqrWefdkdgt 90 
                     + +i+nv++g+ Ld+ g+ + g+p+++++ ++s++  +w+l   ++g  r+++ +    + v     t++ga  ++a ++ g+++q+W+++++g+
      KIR66117.1 617 YQRIVNVTNGLALDSGGNVASGSPLKQWTWDSSAN-LQWQLVdlGTGYHRIVNrT--NGMVVDgfgLTTNGAAAQQAAWN-GGNSQQWQVTDQGN 707
                     568**************9988************88.8899886777888887753..44444445667799999999999.999******99999 PP

                     E...EEETTTSEEEEESTTSSTTTBEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  91 q...irhkksgkCLdvkgasksneklilkkcdsgsdsQkW 127
                     +   i ++ +g++Ld  g+  s + + ++  ++gs++  W
      KIR66117.1 708 RryrIANRATGLVLDGGGQVASGSTVKQW-SWDGSTNLLW 746
                     9999************9998877799999.6799988777 PP

>> Fucosidase_C  Alpha-L-fucosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   3.5e-08   7.9e-05       7      90 .]     424     511 ..     421     511 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.5e-08
  Fucosidase_C   7 pnvwYTskkkekavYaivlewPkdn..elelgslvktskssstqvtllGl..geklkwks..sk.kglkielpqlkidklplkwawtlklt 90 
                   +++ +T++k++  +Ya++l wP ++  + +l+s  + + ss + v+ll++  g+ ++  +  ++ +gl+i+lp+  +++     a+++klt
    KIR66117.1 424 QDIRFTRSKDNRVLYATILGWPGSSvnITTLSSS-RINLSSLAGVQLLDTtaGSYVNLPTrtQDaNGLRITLPS--ASAPFSAPAYVVKLT 511
                   6899**999999**********975423334444.334455799****87544545443344445********5..444444579999987 PP

>> Crystall  Beta/Gamma crystallin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.3e-08   9.7e-05       3      81 ..     530     610 ..     528     611 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.3e-08
                 EEEEECCCEEEEEEESSTB..STHHHHTSTTC.-SEEEEEESEE.EEEEETTTEEEEEEE-SEEESSCCCCTGSSSBS-EEEE CS
    Crystall   3 vlfekenfqGksvelsedc..pslqergfesk.vsSikVlsGaW.vlYekpnfrGrqylleegeypdlsdwgasndrisSlrp 81 
                  ++ +++++G      +++  ++lq+ g+  + +sS++V  G+  v+Y ++nf+G  + +  g+  dl++ g +nd i Slr+
  KIR66117.1 530 SVYANTGYDGGANLSVGSYtaAQLQSAGIGLRtISSVRVTAGHQlVGYANDNFSGTSWTFT-GDNADLRNTG-NNDAIASLRV 610
                 567777777544444433334889999988878*********998***************9.9999999977.8*******96 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   3.9   7.3e-08   0.00016       1      23 [.       5      27 ..       5      30 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 7.3e-08
  TAT_signal  1 klSRRdFLKgsAAaaAAaalggc 23
                ++SRR++L + ++++AAaa+gg+
  KIR66117.1  5 SISRRSLLAALGVTGAAAATGGL 27
                59*******************97 PP

>> DUF1464  Protein of unknown function (DUF1464)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.1e-05      0.07     148     179 ..     651     682 ..     641     695 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.1e-05
     DUF1464 148 elsFilvEvGsgfnaviaVknGkivDGlGgti 179
                 +l++ lv++G+g+  ++  +nG +vDG+G t+
  KIR66117.1 651 NLQWQLVDLGTGYHRIVNRTNGMVVDGFGLTT 682
                 567889***********************986 PP

>> CytB6-F_Fe-S  Cytochrome B6-F complex Fe-S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.9   0.00034      0.75       4      30 ..       4      30 ..       3      33 .. 0.93
   2 ?   -3.6   0.0       5.4   1.2e+04      21      33 ..     567     579 ..     561     579 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00034
  CytB6-F_Fe-S  4 PDmsrRqllNlllvGaialtaaaaLyP 30
                  P+ srR+ll  l v ++a+ +++++ P
    KIR66117.1  4 PSISRRSLLAALGVTGAAAATGGLIRP 30
                  99***********99999999999988 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5.4
  CytB6-F_Fe-S  21 altaaaaLyPvvk 33 
                    +ta+  L+++++
    KIR66117.1 567 RVTAGHQLVGYAN 579
                   5899999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 5516.59
//
Query:       KIR66118.1  [L=237]
Description: hypothetical protein TK50_12895 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1677.50
//
Query:       KIR66119.1  [L=456]
Description: alpha-L-arabinofuranosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-44  151.7   1.4    1.1e-39  135.6   0.3    2.5  2  AbfB            Alpha-L-arabinofuranosidase B (ABFB) domain
    2.7e-07   30.2   1.6    6.4e-07   29.0   1.0    1.9  2  Glyco_hydro_43  Glycosyl hydrolases family 43


Domain annotation for each model (and alignments):
>> AbfB  Alpha-L-arabinofuranosidase B (ABFB) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.1e-06     0.019      93     123 ..     317     346 ..     308     352 .. 0.85
   2 !  135.6   0.3   1.2e-43   1.1e-39      34     140 .]     351     454 ..     345     454 .. 0.97

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.1e-06
                 -TS.TTCEEEEESSSTTEEEEEETTEEEEEE CS
        AbfB  93 GladsgsvsleSynypgrylRhynnelyias 123
                 G +++++ +++S+  pg+y+Rh n + ++++
  KIR66119.1 317 G-GTTQWNRIKSWTNPGSYVRHANGVGRVDA 346
                 5.457888******************99997 PP

  == domain 2  score: 135.6 bits;  conditional E-value: 1.2e-43
                 CHHHC-EEEEE-SS-TTCEEEEESSSTTEEEEEETTEEEEEE--SSHHHHHCT-EEEEE-TS.TTCEEEEESSSTTEEEEEETTEEEEEESS-G-SCCH CS
        AbfB  34 lkqdatftvvaGLadsscvSfesvntpgsyLRhsnfrlrleandgsklFkeDATFcpqaGladsgsvsleSynypgrylRhynnelyiasnggdatasf 132
                 + qd+++++v+GLad+++vSfesvn+pg+yLRhsn+ ++l+and+++ F++DATF ++aGla+sg++s++Syn+p+rylR + n+lyi +++   ta+ 
  KIR66119.1 351 PYQDSQWRIVPGLADPAGVSFESVNQPGRYLRHSNYSMVLAANDNTAIFRADATFYRVAGLANSGWSSFRSYNFPTRYLRQQGNQLYIHEIT---TATE 446
                 689**********************************************************99****************************9...89** PP

                 HHHT-EEE CS
        AbfB 133 raDatfvv 140
                 r++atf+v
  KIR66119.1 447 RENATFRV 454
                 ******86 PP

>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.018   1.6e+02      77     137 ..      27      94 ..      20     104 .. 0.63
   2 !   29.0   1.0   7.2e-11   6.4e-07      10     188 ..      77     250 ..      67     261 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.018
                     TEEEEEEE..EEETTCCCSEEEEEEESSTTS--EECEESSCS.....TSSEC.EEEEEEETTSEEEEEE CS
  Glyco_hydro_43  77 gkyylyyt..atkkgeakqgifvvtadspeGpwsdpiklkts.....gssgi.DpslfedddGkkYlvw 137
                       y + y   +++++ + ++++++++ ++  +w+ +++  +      g+ gi Dp+lf  +dG++ l+ 
      KIR66119.1  27 SAYVMAYFkeSVSGAGNVNSVHLAVSSDA-LEWTPLNNNEAIltptvGTRGIrDPFLFRLNDGTWVLAA 94 
                     56666666343444444445555555544.46776666543355678888888********99987665 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 7.2e-11
                     EESEEEEEETTCEEEEEEEBTEE........SEEEEEEESSSSSCEEEEECEESTTTCSTTTEECT.EEEEEE..EETTEEEEEEEEEETTCCCS CS
  Glyco_hydro_43  10 ypDpsilrvgedyYlvtstfewf........pglrifhSkdLvnWkqvgrvlerrsqlsmkgknas.WAPeis..khdgkyylyytatkkgeakq 93 
                      +Dp++ r +++  + + t+  +        p++ i++S dLvnW+  +       + ++++ n   WAP+i+     ++y + y++   +  + 
      KIR66119.1  77 IRDPFLFRLNDGTWVLAATDIPVggnfwapnPNIHIWTSPDLVNWSSDR-----LLNINWPNPNSFtWAPSIYwdASRNQYAITYST-VPAGYTY 165
                     5799999999985555555444458889999**************9876.....3444443333334*****987888999999994.4445555 PP

                     EEEEEEESSTTS--EECEESSCS.TSSECEEEEEEETTSEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEEEEEEEEECGCCTCTTBBEEEEEEE CS
  Glyco_hydro_43  94 gifvvtadspeGpwsdpiklkts.gssgiDpslfedddGkkYlvwgqwdkreghseiylaeldddtlklkgektklikagtelkglkvtEGPhly 187
                     ++ +v+ +s   + + p+ l+    s+ iD  +++  +G  Yl++++  +    s++y+a+     ++l     ++ ++gt   g+ + E+P ++
      KIR66119.1 166 SVIMVVYTSNFTTVTSPVVLFDGgPSGVIDSHVVTGVNGLNYLYYKSNSP----STLYGAR----STSLNPGSFVRYTNGT---GGGCIEAPTVV 249
                     55555555556667888888766899*********************666....5777776....5666666667777777...88888888888 PP

                     E CS
  Glyco_hydro_43 188 k 188
                     k
      KIR66119.1 250 K 250
                     7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3396.89
//
Query:       KIR66120.1  [L=398]
Description: hypothetical protein TK50_12910 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-15   57.8   7.1    5.5e-15   55.6   7.1    2.2  1  HisKA_3   Histidine kinase


Domain annotation for each model (and alignments):
>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   7.1   3.1e-19   5.5e-15       1      65 [.     191     255 ..     191     258 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 3.1e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLrp 65 
                 ER riAR+LHD+v++++++i+++++la+++++++p++aa+ ++ ++++ar+ l+e+  +l+ Lr+
  KIR66120.1 191 ERVRIARDLHDVVAHHIAVINVHAGLAEHSVRTRPDQAAASVAHVRQAARTVLDELATILALLRQ 255
                 9************************************************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1016  (0.056668); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 2672.78
//
Query:       KIR66121.1  [L=225]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-25   89.0   0.0    3.5e-25   88.3   0.0    1.3  1  Response_reg  Response regulator receiver domain
    7.1e-18   63.9   0.0    1.2e-17   63.2   0.0    1.4  1  GerE          Bacterial regulatory proteins, luxR family
    1.5e-09   37.4   0.0    2.5e-09   36.7   0.0    1.4  1  Sigma70_r4_2  Sigma-70, region 4
    7.7e-06   25.3   0.0    1.7e-05   24.2   0.0    1.6  1  Sigma70_r4    Sigma-70, region 4
      0.001   18.5   0.0      0.002   17.6   0.0    1.6  1  HTH_24        Winged helix-turn-helix DNA-binding
     0.0051   16.6   1.3       0.16   11.8   0.0    2.6  3  HTH_10        HTH DNA binding domain
     0.0057   16.5   0.4      0.022   14.7   0.1    2.1  2  MarR_2        MarR family
  ------ inclusion threshold ------
      0.015   15.0   0.0      0.031   14.0   0.0    1.5  1  HTH_38        Helix-turn-helix domain
      0.048   13.5   0.0       0.15   11.9   0.0    1.9  1  HTH_23        Homeodomain-like domain
      0.052   13.2   1.5      0.097   12.4   0.3    2.2  2  TadZ_N        Pilus assembly protein TadZ N-terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0     2e-28   3.5e-25       1     112 []       5     119 ..       5     119 .. 0.96

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 2e-28
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealkaga 94 
                   vl++dD+ l+r++lr ++e   ++e+vaea++g+ea++l+++ + d++l+Di+mp++dGl++++ i +++    ++v+ilt+ + +e++  al+aga
    KIR66121.1   5 VLLADDQALIRTGLRGIIEsVPDLEVVAEAASGREAVRLARSARADVVLMDIRMPEVDGLQATQLITADEdlAGVRVLILTTFELDEYVLGALRAGA 101
                   89*****************779********************************************77776899*********************** PP

                   SEEEESSG-HHHHHHHHH CS
  Response_reg  95 ddflsKpfdpeeLlkale 112
                   ++fl K  +p+eL++a++
    KIR66121.1 102 SGFLGKGATPTELIEAIR 119
                   ***************985 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   6.6e-21   1.2e-17       1      57 []     156     212 ..     156     212 .. 0.98

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 6.6e-21
                 CSS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   1 ssLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 ++L++RErevL+l+a G+sn +IA +l++++ T k+h+ ++m KL++++r++lv++a
  KIR66121.1 156 DVLTDREREVLALVALGLSNDDIATRLHLAPSTAKTHVNRAMAKLGARDRAQLVVVA 212
                 58****************************************************987 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.4e-12   2.5e-09       7      54 .]     154     200 ..     152     200 .. 0.95

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.4e-12
                   HHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   7 alaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                    l+ L+ r+re++ l    gls ++IA +l++ ++t k+++ RA++kL
    KIR66121.1 154 VLDVLTDREREVLAL-VALGLSNDDIATRLHLAPSTAKTHVNRAMAKL 200
                   6889***********.78****************************98 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   9.6e-09   1.7e-05       1      48 [.     154     200 ..     154     202 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 9.6e-09
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 +L++L++rerevl l+ +  l+  +I+ rl++  ++++ + +rA+ kL
  KIR66121.1 154 VLDVLTDREREVLALVALG-LSNDDIATRLHLAPSTAKTHVNRAMAKL 200
                 59**************985.599************************9 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.1e-06     0.002      17      42 ..     172     197 ..     158     199 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
      HTH_24  17 risqreLAerlglSpstvnrrlkrLe 42 
                 ++s+ ++A rl+l pst +++++r +
  KIR66121.1 172 GLSNDDIATRLHLAPSTAKTHVNRAM 197
                 79*********************965 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.043        76       1      10 [.     158     167 ..     158     171 .. 0.90
   2 !   11.8   0.0   8.7e-05      0.16      27      51 ..     176     200 ..     172     202 .. 0.93
   3 ?   -3.4   0.0       4.8   8.7e+03       8      16 ..     208     216 ..     206     217 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.043
      HTH_10   1 LTdkqlevlk 10 
                 LTd+++evl+
  KIR66121.1 158 LTDREREVLA 167
                 9*******97 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 8.7e-05
      HTH_10  27 keLAkelGIskstlsehLrkaeskl 51 
                 +++A +l +++st++ h+++a+ kl
  KIR66121.1 176 DDIATRLHLAPSTAKTHVNRAMAKL 200
                 79*********************98 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.8
      HTH_10   8 vlklAyemG 16 
                  + +Ay++G
  KIR66121.1 208 LVVVAYQSG 216
                 678999999 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.5   4.5e+03      10      29 ..      93     116 ..      92     119 .. 0.66
   2 !   14.7   0.1   1.2e-05     0.022       5      47 ..     149     198 ..     147     199 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.5
                 HHHHHHCTTTS....EEEHHHHHH CS
      MarR_2  10 vLaaLgrrpgr....dltvgelar 29 
                 vL+aL+++  +      t++el +
  KIR66121.1  93 VLGALRAGASGflgkGATPTELIE 116
                 788888777665555457777765 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHCTTTS.......EEEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2   5 paqarvLaaLgrrpgr.......dltvgelarrlglsksavsrilkrLva 47 
                 p +  vL +L +r+++        l+  ++a rl+l +s++  +++r+ a
  KIR66121.1 149 PPDTTVLDVLTDREREvlalvalGLSNDDIATRLHLAPSTAKTHVNRAMA 198
                 5667788888888877888887778999*******************987 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.7e-05     0.031       5      37 ..     158     189 ..     157     196 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-05
      HTH_38   5 LsleeReeIerllaeGlslreIArrLgrspsTI 37 
                 L+  eR e  +l a Gls+ +IA rL+ +psT 
  KIR66121.1 158 LTDRER-EVLALVALGLSNDDIATRLHLAPSTA 189
                 778888.667899*******************5 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.4e-05      0.15       9      40 ..     164     195 ..     159     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.4e-05
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTvyrwlkr 40 
                 ++l l+a Gls  +IA++L+  ++T    ++r
  KIR66121.1 164 EVLALVALGLSNDDIATRLHLAPSTAKTHVNR 195
                 57888888*****************8766655 PP

>> TadZ_N  Pilus assembly protein TadZ N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   5.4e-05     0.097      88     120 ..      90     122 ..      30     135 .. 0.83
   2 ?   -1.8   0.0       1.3   2.4e+03      93      93 ..     185     185 ..     155     217 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.4e-05
                 HHHHHHHHHHT-SEEEETT-BHHHHHHHHHHHH CS
      TadZ_N  88 nqlvlaamragardfitygaraseltglirrlg 120
                 ++ vl a+raga  f+  ga  +el   ir + 
  KIR66121.1  90 DEYVLGALRAGASGFLGKGATPTELIEAIRTVA 122
                 4679************************99864 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
                 H CS
      TadZ_N  93 a 93 
                 a
  KIR66121.1 185 A 185
                 3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1641.56
//
Query:       KIR66122.1  [L=1069]
Description: hydrogenase expression protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.6e-215  715.6  30.7   1.5e-166  555.9  20.4    2.0  2  ACR_tran   AcrB/AcrD/AcrF family
    1.2e-12   47.4  59.5    1.5e-08   34.0  12.2    3.7  3  MMPL       MMPL family
      1e-05   25.0  41.2    0.00079   18.9  16.1    2.9  3  SecD_SecF  Protein export membrane protein
    0.00072   20.0   8.7        4.2    7.9   0.1    5.2  5  HMA        Heavy-metal-associated domain


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.5   2.6   2.8e-52   1.3e-48       3     246 ..       6     245 ..       4     252 .. 0.95
   2 !  555.9  20.4  3.4e-170  1.5e-166     248    1020 ..     275    1041 ..     272    1042 .. 0.94

  Alignments for each domain:
  == domain 1  score: 165.5 bits;  conditional E-value: 2.8e-52
                 HHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEETTSEEEEEEEESTTS-HHH CS
    ACR_tran   3 kffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqSseglssitltFedgtdidi 101
                 +++++ + ++++l+ +++ lGi+ i sl  + lP++++p+v+v + ypGa+pevve++vt p+E+a++gldg+++++S+S++g++++ ++F  + did+
  KIR66122.1   6 RVSLANRRLVALLTALLVALGIYVIPSLKQQLLPDLSFPAVTVVAAYPGAAPEVVEEQVTGPIEKAVEGLDGVESTTSTSQQGSVQVMVSFSFDSDIDQ 104
                 56777777777888888999******************************************************************************* PP

                 HHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHHHCTT--H CS
    ACR_tran 102 ArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqklaklgltl 200
                 A+ +v+++++++ + LP +v  p++   +t++ +++vla ts     ++  l+  +++++ + L+ v+GV dv ++G +++ v +++d ++l ++glt 
  KIR66122.1 105 AASDVEQAVSKISSALPAGV-DPQVLTGSTADLPTMVLAATSG---GDQHALAAALDEKVVPALRAVDGVNDVAISGVRDRIVTVTPDTAALTRSGLTT 199
                 ********************.788888899999********99...899************************************************** PP

                 HHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEE CS
    ACR_tran 201 tdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivk 246
                 + +v+al +    ++aGq+  ++++l++ + + ++s  +i+++ + 
  KIR66122.1 200 QSIVTALGALGGTSSAGQITSDGRNLSLAVGQPVTSLSQIQNLWLS 245
                 ******************************************9875 PP

  == domain 2  score: 555.9 bits;  conditional E-value: 3.4e-170
                  TTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEEEEEETTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  248 qdgskvrlrDvAkVelgaeeerlaatfngkpavllevkklpganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLv 344 
                  + g++v+l+ vA+V+l  +  + + +++gkp  +++  +  g  + ++++ v+++l++L++ l  ++ +vvv d  + v+++++  v++  ++++++
  KIR66122.1  275 AAGKPVQLKQVATVALTDAPVTSITRTDGKPSLGISLTMDHGGSSPNISDDVRDQLPQLQAALGDDARLVVVSDSGPGVKEAVNGLVEEGALGLLMA 371 
                  679********************************************************************************************** PP

                  HHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  345 vlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNlltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialv 441 
                  +lv+ lFL++ rat+++a+++Plsll++++++   ++slN ltL++L++A+G vvDd+iVv+Eni+r+l+  ge++  a+l +++e++ a+ +++l+
  KIR66122.1  372 ILVIVLFLRSARATVVTAVSIPLSLLVALIAVWQRDYSLNILTLGALTIAVGRVVDDSIVVLENIKRHLGY-GEERATAVLSAVREVATAVTSSTLT 467 
                  ***********************************************************************.************************* PP

                  HHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHS---STT-CT.....SHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHH CS
    ACR_tran  442 llavflPilflgGveGklfrqfaltivlaillsvlvaltltPalcallLkerkeekek.....kffrefnrlfealeraYakllekvlrhravvllv 533 
                   +avflPi+++gG++G+lf +f++t++ a+l+s+lv+lt++P+l+ ++Lk+            +   e  +    l r Y +++++ + hr+ vl+ 
  KIR66122.1  468 TVAVFLPIALVGGFVGELFGSFSITVSAAMLASLLVSLTVVPVLAYWFLKAPADAVGVpadeyRARVEEHERRGLLPRVYLPVIRWAVGHRKTVLAG 564 
                  **************************************************9887554366655333334444567899******************* PP

                  HHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB-HHHHHHHHHHHHHHHHTTTTEEEEEEEECECS.SE..ECCCEEEEEEEES-GCGS-SG CS
    ACR_tran  534 alvllvlsvllfvripkeflPeedegvlvtsvqlppgvsleqtqkvlkqvekilkekpevesvfavtGfae.sgdtagpnsakvfisLkpekerkee 629 
                  al ll+++v+l+ ++ ++f+ +  e ++ ++   p+g+ l+ t ++ k+ve +l   + ves + v G++      + +n+ + + +L   +     
  KIR66122.1  565 ALALLAATVVLAGSLKTTFIGDSGEDSIGVTQTPPAGTDLATTDAAAKKVEGALASVDGVESYQVVIGSSGgFFGSRTANNVSYTLNLAHDA----- 656 
                  ********************************************************************854322234555555555555544..... PP

                  GGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSSSCEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHH CS
    ACR_tran  630 eksvealierlrkelkkipganvellapiqlreletlsgvrselqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaa 726 
                    +++ + +++r+ l++i +a    l++      +   g +s + v + +dd +aLs+a++q+++al  + +++dv+s+ +e+ pq+ v +d ++aa
  KIR66122.1  657 --DSATVSDAVRDRLAAITDAG--ELKLGGGGPGGGGPGGDSTISVSIRADDDQALSQATRQVQEALGGVSQVTDVESDLSESAPQISVVPDGQAAA 749 
                  ..66888899999999999998..44444444467999*********************************************************** PP

                  HCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEE-GGGSSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTT CS
    ACR_tran  727 rlGvsisdindtletalggsyvndfieegrrvkvvvrleedlrsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaeg 823 
                  r+G+++++i ++l + ++g+ v+++  +g   +v vr  ++   s+ ++k+l ++  +   v+l++va++++ +gp + ++ +g r+ +++++++ g
  KIR66122.1  750 RYGLTTNAIVSALRQSVEGTTVTQVTLDGAPRDVLVRTTDAGPDSLAKVKALVLPAGT-ATVRLDQVATVSRVDGPVQRTHVDGERTNTVTATPV-G 844 
                  ***************************************************9888655.579******************************987.6 PP

                  S-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHH CS
    ACR_tran  824 dslseaeeavekiakkvklpegvtiewtgqaeqeqeasnsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqv 920 
                  d ++ a+ av +  ++++lp+g+++e +g ++ + ea ++l + +a+a+ lvfl+L   + s++++l+ l+++P+a+vGa+  ll+++++l v+a++
  KIR66122.1  845 DDTGAASSAVTDKLETLTLPAGASYEIGGVTADQSEAFSQLILAMAAAIALVFLILVGVFRSIRQTLILLVSIPFAFVGAFALLLVTDTPLGVAALI 941 
                  67899999999999999******************************************************************************** PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCT.-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  921 GlilliGlavkNaillvefakelrekegksleeaileaakeRLrPiLMTalaailGvlPLals.tgaGselqqplgivvlgGlvtstvLtLllvPvl 1016
                  G+++liG++v Nai+l++++++ re  g+s++ea++e++++RLrPiLMTala+i+ +lP+al+ tgaG+ +  pl++vv+gGlvtst+LtL l+Pvl
  KIR66122.1  942 GILMLIGIVVTNAIVLMDLVNQYRE-RGMSVAEAVVEGGQRRLRPILMTALATIFALLPMALGiTGAGAFISTPLAVVVIGGLVTSTLLTLVLIPVL 1037
                  *************************.9999********************************968******************************** PP

                  HHHH CS
    ACR_tran 1017 Yvlv 1020
                  Y +v
  KIR66122.1 1038 YTMV 1041
                  *997 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.5      0.79   3.5e+03      82     124 ..      85     125 ..      68     155 .. 0.69
   2 !   34.0  12.2   3.3e-12   1.5e-08     150     300 ..     365     513 ..     318     554 .. 0.84
   3 !   22.5  32.5     1e-08   4.7e-05      98     310 ..     842    1050 ..     689    1056 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.79
        MMPL  82 SkDgkaaralvtlegdpgsteadesvaairaaveearpleglk 124
                 S+ g +++++v++  d++ ++a++ v++  + +++a  ++g++
  KIR66122.1  85 SQQG-SVQVMVSFSFDSDIDQAASDVEQAVSKISSAL-PAGVD 125
                 4444.45888888877777777777777777777666.44444 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 3.3e-12
        MMPL 150 vvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavG..tDYallLvsRyreelaagedreeaviravas 246
                 +++l++++++ ++ +rS  a ++  +++ +sll+al    +++    l++    l+ l +l+iavG  +D  + ++  ++  l+ ge+r++av  av+ 
  KIR66122.1 365 ALGLLMAILVIVLFLRSARATVVTAVSIPLSLLVALIA--VWQRDYSLNI----LT-LGALTIAVGrvVDDSIVVLENIKRHLGYGEERATAVLSAVRE 456
                 667788888888899*******************9866..9998743333....33.345555555449****************************** PP

        MMPL 247 tgkvvtaaGltvaiamlgLvvar...lpvlaqvGvaialGvlvdvlivlTllPAllv 300
                 ++ +vt ++lt ++ +l  +++     + ++++ ++++ ++l ++l++lT++P l+ 
  KIR66122.1 457 VATAVTSSTLTTVAVFLPIALVGgfvGELFGSFSITVSAAMLASLLVSLTVVPVLAY 513
                 *************9999988876222578999*********************9986 PP

  == domain 3  score: 22.5 bits;  conditional E-value: 1e-08
        MMPL   98 pgsteadesvaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilall 194 
                  p  +++ ++  a+++ +e ++ ++g+  e++G   ++ad+++a++ +l l+ +++++++++iL+ v+rS+   l++l+++ + ++ a++l+l++   
  KIR66122.1  842 PVGDDTGAASSAVTDKLETLTLPAGASYEIGG---VTADQSEAFS-QLILAMAAAIALVFLILVGVFRSIRQTLILLVSIPFAFVGAFALLLVTDTP 934 
                  455566677789999999999***********...7888777775.799999**************************************6666665 PP

        MMPL  195 lglelstfvlgllvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvv..arlpvl..aqvGvaialGvlvd 287 
                  lg+  +     + +++li++ +  a+ L+    +++++g + +eav +  ++  + +++ +l  ++a+l +++  +  +++  + ++v++  G++ +
  KIR66122.1  935 LGV--AAL---IGILMLIGIVVTNAIVLMDLVNQYRERGMSVAEAVVEGGQRRLRPILMTALATIFALLPMALgiTGAGAFisTPLAVVVIGGLVTS 1026
                  544..333...44556777777788999999999999*************************999999986652244444411459999999***** PP

        MMPL  288 vlivlTllPAllvll.Graalakp 310 
                  +l++l l+P l +++ Gr+   ++
  KIR66122.1 1027 TLLTLVLIPVLYTMVeGRRERRQA 1050
                  ***********9986477733333 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.31   1.4e+03     134     162 ..      12      43 ..       7      51 .. 0.68
   2 !   15.8  11.7   1.5e-06    0.0069      42     185 ..     368     514 ..     351     518 .. 0.79
   3 !   18.9  16.1   1.8e-07   0.00079      27     182 ..     879    1033 ..     862    1041 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.31
                 HHHHTTHHHHHHHHHHHHHHT...TTTHHHHH CS
   SecD_SecF 134 rtiltslttllvvvallllgg...dslkdfal 162
                 r +++ lt+llv++ ++++++   + l d+++
  KIR66122.1  12 RRLVALLTALLVALGIYVIPSlkqQLLPDLSF 43 
                 56677788888888888877655555666655 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTT..----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH.--SS-HHHHHHHHHHHHHHHHHH CS
   SecD_SecF  42 vliliyvalrFewrvalaaiialvhDviitvgvlsllg..ievdlatvaalLtiiGYSvndtvvvfdrvrenlrk.kkratlkeiinlslnqtLtrtil 137
                 +l++i v + F ++    +++a+   + ++v+++++ +    ++  t++al   +G  v+d++vv + ++ +l   ++rat+   + + + + +t + l
  KIR66122.1 368 LLMAILVIVLFLRSARATVVTAVSIPLSLLVALIAVWQrdYSLNILTLGALTIAVGRVVDDSIVVLENIKRHLGYgEERATAVLSAVREVATAVTSSTL 466
                 5677888888888888888999999999999*99999955667888999*9999******************765134445555555667777888888 PP

                 TTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHHHHH CS
   SecD_SecF 138 tslttllvvvallllggdslkdfalallvGlivgtyssifiaspllll 185
                 t++ ++l+++ +  ++g+   +f++++  ++++  + s+ +   l+++
  KIR66122.1 467 TTVAVFLPIALVGGFVGELFGSFSITVSAAMLASLLVSLTVVPVLAYW 514
                 888888888888888889999999999999999998888777766666 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 1.8e-07
                  HHHHHHHHHHHHHHHHHHHHHHHHHT-HHH.HHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHH CS
   SecD_SecF   27 kelaekavlallialvliliyvalrFewrv.alaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlke 122 
                  +e + + +la+++a++l+++ ++  F+     l  ++++ +  + + ++l ++  ++ +a+++++L++iG  v + +v++d v +   +++ ++++e
  KIR66122.1  879 SEAFSQLILAMAAAIALVFLILVGVFRSIRqTLILLVSIPFAFVGAFALLLVTDTPLGVAALIGILMLIGIVVTNAIVLMDLVNQY--RERGMSVAE 973 
                  46788999********9999999999875404445555666666666677777799***************************998..5579***** PP

                  HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHH CS
   SecD_SecF  123 iinlslnqtLtrtiltslttllvvvallllggdslkdfalallvGlivgtyssifiaspl 182 
                  ++ ++ +  L   ++t l t+++++ + l   ++ + +++ l v +i g ++s ++   l
  KIR66122.1  974 AVVEGGQRRLRPILMTALATIFALLPMALGITGAGAFISTPLAVVVIGGLVTSTLLTLVL 1033
                  ************************999998888889999999999999998888776554 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1   0.00094       4.2      16      58 ..      68     115 ..      66     119 .. 0.83
   2 ?    3.4   0.1     0.024   1.1e+02      19      46 ..     163     191 ..     158     210 .. 0.86
   3 !    7.5   0.1    0.0013       5.6      13      33 ..     611     631 ..     608     635 .. 0.88
   4 ?    2.0   0.0     0.063   2.8e+02      15      41 ..     714     740 ..     712     770 .. 0.79
   5 ?   -1.9   0.0       1.1   4.8e+03      25      56 ..     770     802 ..     750     807 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00094
         HMA  16 vekvLselpgVesvkvdlatktvtVeg......daes.tklrkiieaiek 58 
                 +ek++++l+gVes +     ++v+V++      d+++ +  +++ +a++k
  KIR66122.1  68 IEKAVEGLDGVESTTSTSQQGSVQVMVsfsfdsDIDQaA--SDVEQAVSK 115
                 9**************************998877666533..778887777 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.024
         HMA  19 vLselpgVesvkvdlat.ktvtVegdaes 46 
                 +L +++gV++v ++ +  + vtV+ d+++
  KIR66122.1 163 ALRAVDGVNDVAISGVRdRIVTVTPDTAA 191
                 78899***********9999****99987 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0013
         HMA  13 aakvekvLselpgVesvkvdl 33 
                 a+kve +L++++gVes+ v  
  KIR66122.1 611 AKKVEGALASVDGVESYQVVI 631
                 89***************9865 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.063
         HMA  15 kvekvLselpgVesvkvdlatktvtVe 41 
                  v+++L +++ V++v+ dl ++  +++
  KIR66122.1 714 QVQEALGGVSQVTDVESDLSESAPQIS 740
                 699***************998755555 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 1.1
         HMA  25 gVesvkvdlatktvtVegdaes.tklrkiieai 56 
                  V++v++d a + v V+++++  ++l k+++ +
  KIR66122.1 770 TVTQVTLDGAPRDVLVRTTDAGpDSLAKVKALV 802
                 578888888888888888544447777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1069 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1232  (0.0687155); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.46
# Mc/sec: 6931.65
//
Query:       KIR66123.1  [L=665]
Description: alpha-L-fucosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-87  292.1   6.4    9.6e-87  291.7   6.4    1.1  1  Alpha_L_fucos    Alpha-L-fucosidase
    2.4e-26   92.3  17.4    1.1e-16   61.3   3.5    3.2  3  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    8.8e-11   42.2   0.4    1.7e-10   41.2   0.4    1.5  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    2.8e-05   24.6   0.0    7.4e-05   23.2   0.0    1.7  1  Fucosidase_C     Alpha-L-fucosidase C-terminal domain


Domain annotation for each model (and alignments):
>> Alpha_L_fucos  Alpha-L-fucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.7   6.4   2.1e-90   9.6e-87       9     350 .]      41     395 ..      35     395 .. 0.88

  Alignments for each domain:
  == domain 1  score: 291.7 bits;  conditional E-value: 2.1e-90
                    ----SSS-SSSSS--.SHHHHHHHHH-EEEEE--SGGGTTT..T-GGGHHHHTT--HH.................HHHGGG..............G CS
  Alpha_L_fucos   9 qaeekyeptwesldk.rklpewFrdaKfGifiHWGlysvpaageaseWyarnmkeekekkvvkfhkkkYg..eefeYkdla..............k 87 
                    +  ++y+ptw+s+d+  ++pewF+daKfGi+ HWG+ysvpa  +a+eWy rnm+++ +   +++hk+ Yg  + + Y++++              +
     KIR66123.1  41 EGPQSYTPTWASVDQhPPAPEWFQDAKFGIYYHWGVYSVPA--FANEWYPRNMYNNGS-GENNHHKSVYGdpSVWPYHNFIngandkagnwvqfaP 133
                    55789**********6789**********************..66***********88.99*********9999*****66666666666644448 PP

                    G---TT..--HHHHHHHHHHHT-SEEEEEEE-TT--BSS--TT-S-BGGG.ST-S-HHHHHHHHHHHTT-EEEEEEESS-TT-TT--SS--SHHHH CS
  Alpha_L_fucos  88 eFkaek..FdpeewaklfkaaGakYvvltakHHdgfalwdskvsdwnsvdagPkrDivkelakavrkeglkfglyysladwknpdyyedkkkeedr 181
                    ++k++   +dp+ewa+lf +aGak++ ++a+HHdgf++w+s+v++wnsv +gP+ D+++  a+a+r +glk+ ++ ++a  ++  +++  +++ ++
     KIR66123.1 134 KLKSAGgnWDPNEWAQLFVDAGAKFAGPVAEHHDGFSMWNSQVNEWNSVAKGPRLDLLRLQADAIRGKGLKLWASLHHAFNFTGYFQWAPAQSDAS 229
                    88777678***********************************************************************77777777765555443 PP

                    HHHH........HHHHHHHHHHHHHHHHSTTEEEEEES--SHH..........HHTTHHHHHHH..HHHHHHHSTT..-EEBGGG-B-TTSSBBEE CS
  Alpha_L_fucos 182 ktekkek..kskkykektlnqlkelvtkYkpdilwfDgewekke.........eyynedwkseeelaklykelspgdevlvndrlgkkeaedyqtp 266
                     ++   +  ++ +y + ++++l+e+++ Y+pdi++ D+++ k           +yyn+++ +++ ++++yk+   +++  v d            +
     KIR66123.1 230 LKKLYGQlgSTPEY-QLWYDKLREVIDGYQPDIIYQDFDLSKIPesyrlnflsYYYNKAVSWNKDVVATYKD-GFNNRGEVYD------------F 311
                    33333336555665.89***********************99778999999999999999999999888988.3333555555............9 PP

                    BSS---T-GGG-EEEEE-SB.S--S--S-GS-B--HHHHHHHHHHHHHTTEEEEEEE---TTSS--HHHHHHHHHHHHHHHHHGG CS
  Alpha_L_fucos 267 erglpkelkakpWetcttig.ksWgYkrneeeyksakeliklLvdivskgGnlLLnigptadGsipeeeeerLkeiGkWlkvnge 350
                    erg p+ +++ +W t+++++ +sW+Y+++   y+s+k+l++ L+d +sk+G ++Lni+p adG+ip  ++++L+  G++l++ ge
     KIR66123.1 312 ERGGPAVIQTPYWLTDDSVSsSSWCYTQG-IGYYSTKSLLHALIDRISKNGTMVLNIAPMADGTIPSGQRTILQGFGDHLRRFGE 395
                    ********************9********.***************************************************9998 PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.7   1.2e+04      68      84 ..     476     491 ..     465     495 .. 0.68
   2 !   61.3   3.5   2.5e-20   1.1e-16       9      88 ..     526     603 ..     517     604 .. 0.90
   3 !   37.8   3.3   5.2e-13   2.3e-09       1      55 [.     610     663 ..     610     665 .] 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.7
                      TTTEEEEECGCS-STTE CS
  RicinB_lectin_2  68 asgkvLdvaggstanGt 84 
                       +g+++d++ + t++G+
       KIR66123.1 476 TAGTYIDLT-NRTQDGS 491
                      556777777.6667765 PP

  == domain 2  score: 61.3 bits;  conditional E-value: 2.5e-20
                      ETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEE CS
  RicinB_lectin_2   9 sggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqq 88 
                      ++++gy++i n a+g+vLd  g+ ++ ga v qw++++++n qW+l+d g+g+yrivn+a+g+v+d + g+tanG++  q
       KIR66123.1 526 PTPTGYVKIANGATGLVLDSGGSVAS-GAVVKQWSDVSSTNLQWQLVDVGGGYYRIVNRANGMVVDSW-GNTANGASALQ 603
                      5678***************8776665.***********************99****************.999***99876 PP

  == domain 3  score: 37.8 bits;  conditional E-value: 5.2e-13
                      CCGEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEE CS
  RicinB_lectin_2   1 anQqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrle 55 
                      +nQqW+l+s+g+g y+i+n+++g++Ld  g+ t+ g +v  w+ +g++n qW ++
       KIR66123.1 610 NNQQWRLNSVGNGRYQIVNRGTGTALDGLGSTTS-GSTVAMWAPNGSTNNQWSIT 663
                      69*****8899*****************998887.9****************996 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.4   3.9e-14   1.7e-10       2     127 .]     531     660 ..     530     663 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 3.9e-14
                     EEEEEETTTGEEEEETTCTTSTEBEEEEE-TSCCGGGEEEEE..TTSEEEETT..TTEEEEES.SSSTTSBEEEEETTTTSGGGCEEEETTTTE. CS
  Ricin_B_lectin   2 sgeirnvasgkCLdvegeskagapvglydChgskgkQlwtlt..kdgeirska.qselCldvs.staegakvvlakChkgkgnqrWefdkdgtq. 91 
                     +++i n a+g+ Ld+ g+ + ga v++++  +s++  +w+l   + g +r+++  +++ +d+  +ta+ga+  +a+++ g++nq+W++++ g++ 
      KIR66123.1 531 YVKIANGATGLVLDSGGSVASGAVVKQWSDVSSTN-LQWQLVdvGGGYYRIVNrANGMVVDSWgNTANGASALQAPWN-GGNNQQWRLNSVGNGr 623
                     6899*************9988************77.8899886778999999967777777669*************9.999*******999988 PP

                     ..EEETTTSEEEEESTTSSTTTBEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  92 ..irhkksgkCLdvkgasksneklilkkcdsgsdsQkW 127
                       i+++ +g+ Ld  g+++s + + +++  +gs++ +W
      KIR66123.1 624 yqIVNRGTGTALDGLGSTTSGSTVAMWAP-NGSTNNQW 660
                     88***************99988*****76.99999999 PP

>> Fucosidase_C  Alpha-L-fucosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.6e-08   7.4e-05       7      90 .]     427     514 ..     423     514 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.6e-08
  Fucosidase_C   7 pnvwYTskkkekavYaivlewPkdnelelgslvkt..skssstqvtllGl..geklkwks..sk.kglkielpqlkidklplkwawtlklt 90 
                   +++ +T+ k+++ +Ya+vl wP  + l++++l+++  + s+ t+  llG+  g+ ++ ++  ++ +gl+ ++p+ ++       a+++klt
    KIR66123.1 427 QDIRFTRTKDNTVLYATVLGWPGAT-LNITTLGSNriNLSTLTSARLLGTtaGTYIDLTNrtQDgSGLHLTMPSATAP--FSALAYVVKLT 514
                   6899**998999**********864.555555443103445799*****97668888887764459*******54433..34589999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4457.03
//
Query:       KIR66124.1  [L=290]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-45  153.2   6.3    6.6e-45  153.2   6.3    1.6  2  MLTR_LBD  MmyB-like transcription regulator ligand binding do
    3.6e-16   59.3   7.2    3.6e-16   59.3   7.2    2.5  2  HTH_31    Helix-turn-helix domain
    3.2e-09   36.7   0.1    5.9e-09   35.9   0.1    1.4  1  HTH_3     Helix-turn-helix
    0.00052   20.0   0.0    0.00088   19.3   0.0    1.3  1  HTH_19    Helix-turn-helix domain
     0.0073   16.7   0.0      0.015   15.7   0.0    1.5  1  HTH_26    Cro/C1-type HTH DNA-binding domain


Domain annotation for each model (and alignments):
>> MLTR_LBD  MmyB-like transcription regulator ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.4       1.3   4.5e+03      74     108 ..      52      86 ..      39     103 .. 0.59
   2 !  153.2   6.3   1.8e-48   6.6e-45       1     168 []     108     277 ..     108     277 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
    MLTR_LBD  74 lvarLraeaarrpddpalaalvaeLsaaspefarl 108
                 + arL +  + ++  + l+a+ + L+  ++e + l
  KIR66124.1  52 YYARLEQGQSSNASAEVLDAIATALRLDDAERRHL 86 
                 55666666666666666666666666555554443 PP

  == domain 2  score: 153.2 bits;  conditional E-value: 1.8e-48
    MLTR_LBD   1 vrpalrrlLdalepvPAlVldrrwdvlaaNraaraLlgd.....paalpeperNllrlvfldpglrpliedweevaralvarLraeaarrpddpalaal 94 
                 v++a+r+l++al++vPA+Vl+rr dvla+Nr + aL+++      +++pe ++N+  lvfldp++r+l++dw + ara+v++Lr +a+++pdd+ala l
  KIR66124.1 108 VSAAVRQLMAALGEVPAMVLGRRGDVLAWNRTGNALFAGhvdfaAPQRPENRPNMPLLVFLDPHVRELYADWPAKARAVVGTLRLAAGEHPDDAALATL 206
                 899***************************************9999999************************************************** PP

    MLTR_LBD  95 vaeLsaaspefarlwarhdvaarrsgrkrlrhpevgeltldsetlgtpddptlelvvytaePgdesteaalrlL 168
                 ++ Ls +sp+fa+lwa+h v+   + + ++rhp vg ++++ ++l+t++ ++  +v+ t+e g++s++a + lL
  KIR66124.1 207 IGHLSLGSPHFAALWADHRVKSGAEPVYEMRHPLVGAISVTQQSLRTERGQQ--VVLATTEVGSPSHAA-MTLL 277
                 **************************************************99..5*************9.7665 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   7.2     1e-19   3.6e-16       1      64 []       6      86 ..       6      86 .. 0.99
   2 ?   -0.3   0.2      0.39   1.4e+03      34      55 ..      97     120 ..      91     127 .. 0.60

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 1e-19
      HTH_31  1 aLGalLralRera.................GLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerael 64
                +LG++L+a+R +                  GL++ee+A ++gvs+s++ rlEqG+  + s +vl+a+a+al+ld+aer++l
  KIR66124.1  6 QLGEFLQARRSQLrpedvdlatyggrrrvsGLRREELALLAGVSPSYYARLEQGQSSNASAEVLDAIATALRLDDAERRHL 86
                79*********99******************************************************************98 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.39
      HTH_31  34 lEqGrrgrpspa...vlealaralg 55 
                   +Grr  p +    ++++l  alg
  KIR66124.1  97 RATGRRSAP-ETvsaAVRQLMAALG 120
                 557777533.222337777777776 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   1.6e-12   5.9e-09       9      51 ..      36      79 ..      31      82 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.6e-12
                THHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSE CS
       HTH_3  9 glsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvs 51
                gl +eeLA ++Gvs+s+++r+E G  +n s e+l ++a aL ++
  KIR66124.1 36 GLRREELALLAGVSPSYYARLEQGqSSNASAEVLDAIATALRLD 79
                899*************************************9875 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.4e-07   0.00088      12      52 ..      36      76 ..      32      83 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.4e-07
      HTH_19 12 gltqeelaerlgisrskisaiEngkkdvpsaelllkiaeal 52
                gl  eela  +g+s+s+++ +E g++ ++sae+l +ia al
  KIR66124.1 36 GLRREELALLAGVSPSYYARLEQGQSSNASAEVLDAIATAL 76
                67789*******************999**********9876 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.3e-06     0.015      12      52 ..      38      78 ..      34      81 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.3e-06
      HTH_26 12 tkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgc 52
                 + eLa  +g+s +  +rl +g+ ++ s+++Ld+i++aL  
  KIR66124.1 38 RREELALLAGVSPSYYARLEQGQSSNASAEVLDAIATALRL 78
                6789999*******************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2200.02
//
Query:       KIR66125.1  [L=315]
Description: hypothetical protein TK50_12940 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-09   35.7   0.0     0.0018   17.9   0.0    3.2  3  SGL       SMP-30/Gluconolactonase/LRE-like region
     0.0014   18.7   1.1     0.0069   16.6   0.1    2.6  2  He_PIG    Putative Ig domain
     0.0035   17.3   0.1       0.15   12.1   0.0    3.2  3  NHL       NHL repeat


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0031        18     173     226 ..      35      92 ..      27     104 .. 0.72
   2 !   17.9   0.0     3e-07    0.0018      94     182 ..     109     195 ..     105     239 .. 0.70
   3 !    9.3   0.1   0.00013      0.79     196     245 ..     249     297 ..     246     298 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0031
         SGL 173 rrvfadlkkge.gepDGlavDaeGnvwvAvwgggkvvrfdpdGkl..ieeiklpak.r 226
                 +r f +++ ++ + p  +a+  +G  +v+  ++ +v+ +d dG++  +++ + pa+  
  KIR66125.1  35 ARIFRHFDLAQgQLPENIALAPDGTAYVTFAAARQVASIDRDGTVrvLATLAAPADgG 92 
                 566755555552359999************************9861145555555555 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 3e-07
         SGL  94 dpdGrlwfGtmgdeeakgeevgalyrldpdgk.ler.vlddltipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkg 182
                 +pdG ++f   + + a+    ++lyrl  +g  +++  l   + pNGla+++ + t+Y++Ds+ ++i+a++       +s++  +a +   
  KIR66125.1 109 QPDGTIYFLYASGDAAT----TGLYRLPRGGVpCRVaALPAAGLPNGLALDERTGTFYVTDSVLGTISAVKPGGRAVVWSSAPELAATGFL 195
                 56666666555444444....4599998884424440446789*************************99887777777777766555544 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00013
         SGL 196 nvwvAvwgggkvvrfdpdGklieeiklp..akrvtscaFgGpdlrtLyitsa 245
                  v++A++g+++vvr+d +G+ ++  +     +++t++a      +t y+tsa
  KIR66125.1 249 DVIAALVGANRVVRVDAAGRSTTLLTAAdgLQNPTAVAV---RANTAYVTSA 297
                 5899****************9998888853447777775...889******9 PP

>> He_PIG  Putative Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.2e-06    0.0069       9      29 ..     145     167 ..     140     179 .. 0.79
   2 ?   -1.7   0.1       0.6   3.6e+03      34      47 ..     265     278 ..     260     279 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.2e-06
      He_PIG   9 sngLPsGLtLdsstGtitGt..p 29 
                 + gLP GL Ld  tGt+++t  +
  KIR66125.1 145 AAGLPNGLALDERTGTFYVTdsV 167
                 579****************9651 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.6
      He_PIG  34 apGsytftVtatdg 47 
                 a+G+ t  +ta dg
  KIR66125.1 265 AAGRSTTLLTAADG 278
                 55999999999987 PP

>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.14   8.2e+02       4      18 ..      49      63 ..      47      63 .. 0.87
   2 !   12.1   0.0   2.5e-05      0.15       4      20 ..     149     166 ..     147     167 .. 0.94
   3 ?   -0.3   0.0      0.23   1.4e+03       1      18 [.     279     295 ..     279     295 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.14
                EEEEEEETTTEEEEE CS
         NHL  4 PhGvavdsnGdiyVa 18
                P+ +a+ ++G  yV+
  KIR66125.1 49 PENIALAPDGTAYVT 63
                78899******9997 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.5e-05
                 EEEEEEE.TTTEEEEEEC CS
         NHL   4 PhGvavd.snGdiyVaDs 20 
                 P+G+a+d  +G +yV+Ds
  KIR66125.1 149 PNGLALDeRTGTFYVTDS 166
                 9****************7 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.23
                 BSSEEEEEEETTTEEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVa 18 
                 +++P+ vav   +  yV+
  KIR66125.1 279 LQNPTAVAV-RANTAYVT 295
                 689******.88888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2215.95
//
Query:       KIR66126.1  [L=284]
Description: gluconolactonase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-69  234.6   0.0    1.5e-69  234.3   0.0    1.1  1  SGL       SMP-30/Gluconolactonase/LRE-like region


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.3   0.0   8.3e-74   1.5e-69       2     245 ..      15     252 ..      14     253 .. 0.97

  Alignments for each domain:
  == domain 1  score: 234.3 bits;  conditional E-value: 8.3e-74
         SGL   2 gEGpvwdeeegaLlwvDilgqrihrldpatgketvldtpesvGaiaprkdgrlvvasksglall.dlasgeletladeeedekpllrfNDgvvdpdGrl 99 
                 gEGpvw++++++L wvD+l + i +ldpatg     ++   v a+ pr +g+lvva+++g+all d    ++e l + + ++ p++r+NDg++dp Gr+
  KIR66126.1  15 GEGPVWCPADRRLRWVDMLVGDILALDPATGVVARRHVAPVVAALRPRSAGGLVVAVERGFALLgD---DSVELLPEVW-SD-PSIRMNDGACDPLGRF 108
                 9**********************************************888**************54...5799999986.55.8*************** PP

         SGL 100 wfGtmgdeeakgeevgalyrldpdgklervlddltipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkgegepDGlavDaeGnvw 198
                 ++G+m+++ a+g+  ++l rld+dg++e vl++lt++NGlaw+++g+   ++Ds+t+++ ++ +d  +g+l +rr+ +d++++ g+pDGl++D+eG+ w
  KIR66126.1 109 YCGSMAYDAAPGR--ASLHRLDADGAVETVLTGLTVSNGLAWTRQGDAAWYVDSATQRLDVFAFDLATGELRDRRPAVDVPPAVGTPDGLCLDSEGGAW 205
                 *************..************************************************************************************ PP

         SGL 199 vAvwgggkvvrfdpdGklieeiklpakrvtscaFgGpdlrtLyitsa 245
                 vA+w+gg ++r++pdG+l++ ++lp++r+t+caFgGpd  +Ly+ts+
  KIR66126.1 206 VALWDGGALHRYAPDGRLTAVVELPVRRPTACAFGGPDHADLYVTSS 252
                 *********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       194  (0.0108205); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2344.15
//
Query:       KIR66127.1  [L=159]
Description: GCN5 family acetyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-14   52.6   0.0    5.6e-14   52.4   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    4.4e-10   39.6   0.0    5.5e-10   39.3   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
      7e-10   39.2   0.0    9.3e-10   38.8   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
      0.005   16.6   0.0     0.0071   16.1   0.0    1.3  1  PanZ             Acetyltransferase (GNAT) domain, PanZ
     0.0051   16.7   0.0     0.0091   16.0   0.0    1.3  1  FR47             FR47-like protein
  ------ inclusion threshold ------
      0.023   14.8   0.0      0.038   14.1   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
      0.065   13.9   0.0      0.086   13.5   0.0    1.2  1  Acetyltransf_3   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   2.2e-17   5.6e-14      29     117 .]      49     140 ..      21     140 .. 0.81

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 2.2e-17
                     HSTTCEEEEEEETTE.EEEEEEEEEEET..TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  29 sleaegllvaeedge.liGfisllkipd..ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     +l a+++++++ +ge  +G + l+ +p     g+va +++l+V+pe rg+ +G aLlea+ + a e+g+  +++ v+  ++ a+r+Ye +GF
      KIR66127.1  49 RLLAGEHFLVLLGGEpAVGVAVLSFRPSlwYTGPVATLDELYVRPETRGRRYGHALLEAACRLAGERGAGSLEINVDGEDVDARRFYEAHGF 140
                     33566666667777769*************889************************************999***************99**9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   2.1e-13   5.5e-10      21     111 ..      46     145 ..      25     149 .. 0.83

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 2.1e-13
  Acetyltransf_10  21 alrerieegealllvaeeggkivGvielrdgs.........hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYek 103
                      +lr+ + +ge+ +lv+  g+  vGv+ l+ +           +  l+V+pe rg+ +g+aLlea+++ a ++g +  e++v+  +  a++fYe 
       KIR66127.1  46 RLRRLL-AGEH-FLVLLGGEPAVGVAVLSFRPslwytgpvaTLDELYVRPETRGRRYGHALLEAACRLAGERGAGSlEINVDGEDvDARRFYEA 137
                      555555.6666.555556789999996633333677777999***************************9**99999****99999******** PP

  Acetyltransf_10 104 lGFkavge 111
                      +GF++v++
       KIR66127.1 138 HGFTNVEP 145
                      ****9965 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   3.6e-13   9.3e-10       3      75 ..      54     141 ..      52     142 .. 0.67

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 3.6e-13
                     EEEEEEEETTEEEEEEEEEEES........TCTEEEEE-GGGTTSSHHHHHHHHTT.....SEEE..EEEEEE..THHHHHHHHHHTTEE CS
  Acetyltransf_7   3 gevfVaeddgkivGfialslld........aeitrlaVdpeyrgkGiGraLleaae.....kgii..leqlel..naekaikfYeklGFe 75 
                     ++++V+  ++  vG ++ls +         a + +l+V+pe rg+ +G+aLleaa+     +g    le  ++  ++  a++fYe +GF+
      KIR66127.1  54 EHFLVLLGGEPAVGVAVLSFRPslwytgpvATLDELYVRPETRGRRYGHALLEAACrlageRG-AgsLE-INVdgEDVDARRFYEAHGFT 141
                     67777666666678777777768777766556666******************8334434433.12223.2232233389*********7 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.8e-06    0.0071      60      91 ..      82     113 ..      76     147 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.8e-06
        PanZ  60 keaelsdlcVRevTRrRGVgsyLleearrqaP 91 
                  +a+l++l VR +TR R  g+ Lle a r a 
  KIR66127.1  82 PVATLDELYVRPETRGRRYGHALLEAACRLAG 113
                 6799*********************9988774 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.5e-06    0.0091      20      79 ..      82     142 ..      78     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.5e-06
                 TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EE.EEEETT-HHHHHHHHHHT-EE CS
        FR47  20 dggelgalqvlpehrrrGlgsrlvkalakeiaergktvl.lvvvasNtpsirlyeklGfek 79 
                 ++  l  l+v+pe r+r +g  l +a  +   erg  +l + v  ++  ++r+ye+ Gf+ 
  KIR66127.1  82 PVATLDELYVRPETRGRRYGHALLEAACRLAGERGAGSLeINVDGEDVDARRFYEAHGFTN 142
                 5678899**********************9999**9877366778899***********86 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.5e-05     0.038      12      57 ..      68     116 ..      58     118 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
  Acetyltransf_CG  12 vafleYe...vrkegvldfthTeVpeelrGkGiAkkLvkaalddareeg 57 
                      va+l+++   +  + v +++  +V +e rG+ ++ +L +aa   a e+g
       KIR66127.1  68 VAVLSFRpslWYTGPVATLDELYVRPETRGRRYGHALLEAACRLAGERG 116
                      57777777776667799************************99998876 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.4e-05     0.086       5     138 .]      12     141 ..      10     141 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.4e-05
  Acetyltransf_3   5 rplteeDlealfelrsdpevmry.lpepltleeaeewlerawaeeseeegygwaivlkdtgviGsv..glrdleeedee.aelg.ymlapsfwgk 94 
                     rp+t +D++ ++e + d   +++ +p+ + +    ++l+r +       g  +++ l ++ ++G++  ++r+  + ++  a l+ ++++p+ +g+
      KIR66127.1  12 RPATVSDADLVAE-MLDAFNREFdTPT-PGPRVLAARLRRLL------AGEHFLVLLGGEPAVGVAvlSFRPSLWYTGPvATLDeLYVRPETRGR 98 
                     7888888777777.4444445564333.33444444444333......34557775544433555532777777777668777668999****** PP

  Acetyltransf_3  95 GyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                      y++  ++a++++a  e g+  l++++d e    +r +e  Gf+
      KIR66127.1  99 RYGHALLEAACRLA-GERGAGSLEINVDGEDVDARRFYEAHGFT 141
                     **************.6777***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1143.66
//
Query:       KIR66128.1  [L=506]
Description: endo-1,4-beta-xylanase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-65  220.6   0.0    3.8e-65  220.1   0.0    1.2  1  Glyco_hydro_10  Glycosyl hydrolase family 10
    2.9e-20   72.5   9.1    8.3e-20   71.0   9.1    1.8  1  CBM_2           Cellulose binding domain
  ------ inclusion threshold ------
      0.015   15.3   7.6      0.024   14.7   7.6    1.3  1  MSA-2c          Merozoite surface antigen 2c


Domain annotation for each model (and alignments):
>> Glyco_hydro_10  Glycosyl hydrolase family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.1   0.0   6.4e-69   3.8e-65       2     315 ..      43     362 ..      42     363 .. 0.87

  Alignments for each domain:
  == domain 1  score: 220.1 bits;  conditional E-value: 6.4e-69
                     HHHHHHHTT.EEEEEESCHGHHCTTHHHHHHHHH-SEEEESSTTSHHHHCSBTTBEE.-HHHHHHHHHHHHTT-EEEEEEEEESSS--HHHHTSC CS
  Glyco_hydro_10   2 lkelakakf.kvgtavsaselegeskekellkkefnsltaeNemKwealepsegnft.fekadklvdfakennmkvrGHtLvWhsqlPdwvkken 94 
                     l+++a++++  +g+a+s+++l        ++ +efn+lt+eN+mK++ + +s+g ++    ad+lv++a++nnm vrGHtLvWhsq  +  +   
      KIR66128.1  43 LRAAAAKAGlFFGVAASPNRLYP------IVGQEFNQLTPENDMKPDRIATSSGGLQnTGGADTLVNHAQSNNMLVRGHTLVWHSQAGAL-QG-- 128
                     56677777778899999886655......8*********************99977615689************************9843.22.. PP

                     CCHHHHHHHHHHHHHHHHHHHHTTTTESEEEEEES-B-TTSCSBE-..............SHHHHHHTTHHHHHHHHHHHHH-T....TSEEEEE CS
  Glyco_hydro_10  95 gskaeeallkrlenhiktvverykgkiyawDVVNEavddnggslre..............svwyqilGedyiekAFeaAreadp....dakLyyN 171
                        a+   ++ l+++i + ++r+  ki+ wDVVNEa++dn+++ r+                + ++  +d i+ +F  A+++      ++kL++N
      KIR66128.1 129 ---AS---QATLNTFIGNAINRWGSKIAYWDVVNEALEDNNTGRRRnqwphtmnrdangdGDFFDAGDTDVIRDSFIRAKQVVQaggySTKLCIN 217
                     ...23...578******************************5555547888888888877666666669************99889999****** PP

                     ESSTTST.......SHHHHHHHHHHHHHHHTT----EEEE--EEETTSC..HHHHHHHHHHHHHTTTSEEEEEEEEEECETTSSHHHHHHHHHHH CS
  Glyco_hydro_10 172 DYnieea.......nakrkavvelvkelkekgvpidgvGiQsHlsvdsp..siseieaalkklaalglevaitELDirvkkssseeealeaqakr 257
                     DY++e         n+k++a++++v++ ++    id+vG+QsH++ + +   +++++a+++++a+lg+ev+++E+Di+++ s+  +   + qa++
      KIR66128.1 218 DYDVEGLtvqgggpNRKANALYDIVRTYRQ--Y-IDCVGFQSHFNDNPNsiITNDLQANIQRFADLGVEVHLSEVDIDDDLSN--NDIGAGQAEN 307
                     ***9964444556689*********99865..3.8*********98888445689************************7766..79999***** PP

                     HHHHHHHHHHCTTTEEEEEESSSBGGGSTTHHHSTTEC--SSB...-TTS-B-HHHHHHHH CS
  Glyco_hydro_10 258 ykelvkallevkekitgvtvWgvtDkysWlsglkkkeeapllf...dsnyqpkpayeavvd 315
                     y+++v+a+l+v+ k+tg+tvWg++D++sW+s+     e+ llf   + +yq+k+ay+av+d
      KIR66128.1 308 YRKVVRACLNVS-KCTGITVWGISDSESWRSS-----ERGLLFtggNGSYQKKAAYHAVLD 362
                     ************.******************9.....99****666789*********987 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   9.1   1.4e-23   8.3e-20       2      90 ..     414     500 ..     413     505 .. 0.90

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 1.4e-23
                 EEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS--- CS
       CBM_2   2 eatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsa 90 
                 +at++++ +W +Gf a+v+v+  g+s+i gWtv +tlpag++vt++W+at+s+s  +v+++nvs+Ng +++G+ ++fGfqg+++++  +
  KIR66128.1 414 SATVSLN-SWTGGFVATVRVT-AGTSPIRGWTVALTLPAGTTVTNAWSATASGSSGTVQFSNVSYNGAVNAGQYTEFGFQGTGSATGVT 500
                 5666655.9***********9.58999******************************************************99887544 PP

>> MSA-2c  Merozoite surface antigen 2c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   7.6     4e-06     0.024     135     199 ..     354     417 ..     306     430 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4e-06
      MSA-2c 135 iaalkdvteeLlkelqekkPsrtssaetPaPsdaesaaaqPPeskpaqaPaPtspsqseesssnl 199
                  aa + v +eL k  +   P++t  + tP P++    ++ PP + p+ +P Pt+p+++   s+ +
  KIR66128.1 354 KAAYHAVLDELNKGRTGTPPTTTPPPTTPPPTTP-PPTTPPPTTPPPTTPPPTTPPPATGCSATV 417
                 5788999************************999.6677788889999*******9998777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 3775.45
//
Query:       KIR66129.1  [L=1319]
Description: secretion protein EccC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-87  290.4   0.0      6e-47  160.0   0.0    5.2  5  FtsK_SpoIIIE     FtsK/SpoIIIE family
    8.8e-08   32.7   6.6      0.019   15.4   0.2    4.4  5  AAA_16           AAA ATPase domain
    9.4e-07   29.2   0.2     0.0048   17.2   0.0    3.5  3  AAA_22           AAA domain
    0.00016   21.6   0.1       0.25   11.3   0.1    3.8  4  NACHT            NACHT domain
    0.00023   21.3   5.2        0.2   11.7   0.3    3.1  3  DUF87            Helicase HerA, central domain
     0.0012   18.9   0.5       0.93    9.6   0.0    2.9  3  MMR_HSR1         50S ribosome-binding GTPase
     0.0017   17.2   0.4        0.6    8.8   0.1    2.2  2  Adeno_IVa2       Adenovirus IVa2 protein
     0.0018   18.0   3.1       0.84    9.4   0.3    3.1  3  AAA_29           P-loop containing region of AAA domain
     0.0018   18.6   0.0         21    5.5   0.0    3.4  3  RNA_helicase     RNA helicase
     0.0043   17.6   2.8        2.2    8.8   0.1    3.2  3  ABC_tran         ABC transporter
      0.006   16.2   0.4        4.2    6.9   0.3    3.2  3  AAA_25           AAA domain
      0.006   16.3   0.1        4.5    6.9   0.1    3.1  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0061   16.8   0.1        3.2    8.0   0.0    3.0  3  Roc              Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
      0.013   16.0   0.9         29    5.2   0.0    3.5  3  AAA_18           AAA domain
      0.015   15.6   0.2        3.5    8.0   0.0    3.4  3  AAA_19           AAA domain
      0.027   13.4   1.0       0.67    8.8   0.1    2.8  3  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
       0.03   14.1   0.2       0.82    9.4   0.1    2.8  3  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      0.053   13.7   0.0        3.5    7.8   0.0    3.5  4  AAA_33           AAA domain
      0.058   12.4   0.6        4.9    6.1   0.0    2.3  2  T2SSE            Type II/IV secretion system protein
        0.1   11.5   0.4        4.7    6.0   0.0    2.4  3  AAA_10           AAA-like domain
       0.11   13.0   0.1         27    5.2   0.1    2.7  3  AAA_23           AAA domain
       0.26   11.2   0.7         56    3.6   0.1    3.1  3  MobB             Molybdopterin guanine dinucleotide synthesis
       0.27   11.0   0.1         11    5.7   0.0    2.8  3  AAA_24           AAA domain


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.04        31      56     108 ..     228     281 ..     226     297 .. 0.83
   2 !   84.6   0.0   8.3e-27   6.5e-24      14     127 ..     444     565 ..     434     579 .. 0.94
   3 !   19.3   0.0   7.5e-07   0.00058     188     241 ..     583     631 ..     576     633 .. 0.89
   4 !  160.0   0.0   7.7e-50     6e-47      21     241 ..     811    1040 ..     794    1041 .. 0.89
   5 !   15.1   0.0   1.4e-05     0.011      22      82 ..    1095    1155 ..    1082    1184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.04
                   HHHHHHHHHTT--TTTEEE.EEE-TTSS.SCGGGTT-TTBSS.S-B-SHHHHHHH CS
  FtsK_SpoIIIE  56 lntLilSlatthtPeeVql.iliDykgv.elsalediphllsvavatdperalra 108
                   l++L++ l t h+PeeV+  +++++ g+ + +  + +ph  + +  +d+   lr+
    KIR66129.1 228 LRSLLAQLGTLHAPEEVRVaFCVGPDGLaAWEWAKWLPHAQH-PAEQDAAGGLRL 281
                   899***************879******988899999999999.666666666665 PP

  == domain 2  score: 84.6 bits;  conditional E-value: 8.3e-27
                   ---TTEEEEEEETTS-EEEEEGGGS-......SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS.SCGGGTT-TTBSS...S-B-SH CS
  FtsK_SpoIIIE  14 essqlpvalgkeisgnplvldlkkma.....shllvaGatgsGKStalntLilSlatthtPeeVqliliDykgv.elsalediphlls..vavatdp 102
                    +++l v +g++ +g p++ld+k++a     +h++++GatgsGKS+ l+tL+l+la+th+ e ++l+l+D+kg+ ++  l+++ph+ +  ++ a+++
    KIR66129.1 444 PDARLRVPIGVDATGAPVELDIKESAlggmgPHGMLIGATGSGKSELLRTLVLALAVTHSSETLNLVLVDFKGGaTFLGLDRLPHTSAviTNLADEA 540
                   56789999******************************************************************************99889****** PP

                   HHHHHHHHHHHHHHHHHHHHHHHTT CS
  FtsK_SpoIIIE 103 eralraleeLvkemeeryalfreag 127
                     + r+ ++L  e+ +r++l+r+ag
    KIR66129.1 541 SLVGRMRDALHGELVRRQELLRAAG 565
                   **********************987 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 7.5e-07
                   -----EEEEEEC-HHHHHHHHHHH....HHHHHHHHHHHCGGGTEEEEEEES-- CS
  FtsK_SpoIIIE 188 lekrpslvvivderieLrlaapkdssvlvedaivRlarkgraaglHlllatqrl 241
                   l ++p+l+v+vde+ eL  a+++      +d++v ++r gr+ ++Hllla qr+
    KIR66129.1 583 LDPLPTLFVVVDEFSELLAAHRDF-----IDLFVMIGRLGRSLAVHLLLASQRV 631
                   5689*************8777777.....***********************96 PP

  == domain 4  score: 160.0 bits;  conditional E-value: 7.7e-50
                    EEEEETTS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSSCGGGTT-TTBSS.S-B-SHHHHHHHHHHHHHH CS
  FtsK_SpoIIIE   21 algkeisgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgvelsalediphllsvavatdperalraleeLvke 115 
                    + + e+ ++ l++dl+++ +h+ vaG+t sGKSt ++tLi++la+th P +Vq++++D++g++l+++ ++ph++sva++ d +r+ r++ e++ +
    KIR66129.1  811 DKPYEQLRDLLTVDLSGVGGHIGVAGGTRSGKSTLIRTLICALALTHRPTDVQFYCLDFGGGTLGTVAGLPHVGSVAGRLDTDRVGRTVTEVTGL 905 
                    556677889999*********************************************************************************** PP

                    HHHHHHHHHHTT-SSHHHHHHHHHH..HHHTT---B-TT-..........................-----------B-----EEEEEEC-HHHH CS
  FtsK_SpoIIIE  116 meeryalfreagvrsiaaydgeiae..dpldifgdvflvlDnyddlaaene....ritsLsnqgpsygvhvlvtagrelekrpslvvivderieL 204 
                    + +r++ f+e+g++si+ y+   ae   ++d  gdvflv+D++ +l++e+e    +  +++++g+++gvh++v+a+r++e   s++++++  +eL
    KIR66129.1  906 ITRRERRFAEQGIDSIQTYRRLRAEgrIADDPYGDVFLVVDGWFTLRQEFEplevSLREIAARGLNFGVHLIVSAARWSEVHHSMRDQLGIKLEL 1000
                    ******************5554443114556667*******************99999************************************* PP

                    HHHHHHH.......HHHHHHHHHHHCGGGTEEEEEEES-- CS
  FtsK_SpoIIIE  205 rlaapkds...svlvedaivRlarkgraaglHlllatqrl 241 
                    rl ++ ds    +l+ ++++ ++ +   + lH+l a +r+
    KIR66129.1 1001 RLGDAVDSaidLRLAATVPRAPGHGLTPEKLHFLGALPRI 1040
                    *******866555666666666666778889988888875 PP

  == domain 5  score: 15.1 bits;  conditional E-value: 1.4e-05
                    EEEET.TS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS CS
  FtsK_SpoIIIE   22 lgkei.sgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgv 82  
                    lg +    +p+ +d ++ + hl  +G ++sGK++ l+ L   ++ + tP e + +++Dy   
    KIR66129.1 1095 LGLDEtDLQPYWHDFAELP-HLTGLGDSQSGKTNLLRHLARMIVGRFTPAEARILVVDYRRQ 1155
                    555553447999*******.**************************************9865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       1.4   1.1e+03     119     158 ..     186     227 ..     101     248 .. 0.69
   2 ?   -1.8   0.1       4.5   3.5e+03      72      89 ..     223     250 ..     206     301 .. 0.56
   3 !   15.4   0.2   2.4e-05     0.019      19     164 ..     469     616 ..     463     625 .. 0.77
   4 !    8.7   0.2    0.0028       2.2       9      45 ..     814     850 ..     811     913 .. 0.88
   5 !    8.0   0.0    0.0044       3.4      31     115 ..    1119    1199 ..    1113    1247 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.4
      AAA_16 119 llellkrll.allsrderplvlvlDdlqwadeaslql.laaL 158
                  + +l+r++ a+++ +++p+ l+l  +  ++ +   +  +aL
  KIR66129.1 186 AAKALRRFIrAYSTLPDQPVALFLPGFAEIRVTGERAlARAL 227
                 456788888777777888888888777766664444422333 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.5
      AAA_16  72 laqalareellrqllde...........a 89 
                 la+al r +ll+ql++             
  KIR66129.1 223 LARALLR-SLLAQLGTLhapeevrvafcV 250
                 5666644.666666666333333333330 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 2.4e-05
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekdg.giflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea 116
                 +  g ++  +l+G+ G+GKs l+r+l  al  ++   +l+   ++++ +++++ l ++  ++ +++ l+de  ++++++ r++l+++l   +el +a+ 
  KIR66129.1 469 ALGGMGPHGMLIGATGSGKSELLRTLVLALAVTHsSETLNLVLVDFKGGATFLGLDRLPHTSAVITNLADE--ASLVGRMRDALHGELVRRQELLRAAG 565
                 5567778999*************888766666643666888888888889999999999999999999999..778************97777777777 PP

      AAA_16 117 ..srllellkrllallsrderp.lvlvlDdlqwadeaslqllaaLlrlles 164
                   s++l+  k+ +  ++ d  p l +v+D++  + +a ++++++++  +  
  KIR66129.1 566 gySSVLDYEKARAGGAPLDPLPtLFVVVDEFSELLAAHRDFIDLFVMIGRL 616
                 78444444444444444444455********99999999999988766555 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0028
      AAA_16   9 leqLlsalervrsgrpelvllsGesGvGKsslvrell 45 
                  eqL+++l    sg ++ + + G   +GKs+l+r+l 
  KIR66129.1 814 YEQLRDLLTVDLSGVGGHIGVAGGTRSGKSTLIRTLI 850
                 799******9999999*****************9986 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.0044
      AAA_16   31 GesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde...aesaeleawrekleeala......avpelagae 115 
                  G+s +GK+ l+r+l+r + ++   f+ ++++ l        ++++   ++l+  + d+     s +++a re++ +a+a      +++++++++
  KIR66129.1 1119 GDSQSGKTNLLRHLARMIVGR---FTPAEARIL--------VVDYR--RQLFDTIPDDyrlGYSVSADATRETIADAVAglkgrlPGKDISPEQ 1199
                  999************988877...777777777........55555..4888888888666444444444555555444444444333333333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.2e-06    0.0048       7     104 ..     476     600 ..     473     631 .. 0.70
   2 ?    3.6   0.3     0.096        75       6      29 ..     830     853 ..     826     908 .. 0.85
   3 ?    3.8   0.0     0.084        65      12      65 ..    1119    1188 ..    1114    1248 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6.2e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee....................erpevvfvtlpsstsskdllrellralglelka..erlsseelleale 83 
                 +++++G +G+GK+ llr+l+  l    + e+                    ++ +     ++++ + ++l  ++  al+ el +  e l+    ++ + 
  KIR66129.1 476 HGMLIGATGSGKSELLRTLVLALAVTHSSETlnlvlvdfkggatflgldrlPHTS---AVITNLADEASLVGRMRDALHGELVRrqELLRAAGGYSSVL 571
                 799*******************966655555999999999888888885444444...44444444456666666666666666555677777778888 PP

      AAA_22  84 qalrarav........ielliiDEaqhlr 104
                 ++ +ara         + ++++DE+  l 
  KIR66129.1 572 DYEKARAGgapldplpTLFVVVDEFSELL 600
                 88888877889999999999999998863 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.096
      AAA_22   6 gilvvtGesGtGKTtllrrlleql 29 
                 g++ v G + +GK+tl+r+l   l
  KIR66129.1 830 GHIGVAGGTRSGKSTLIRTLICAL 853
                 77889999**********997665 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.084
      AAA_22   12 GesGtGKTtllrrlleqldeeakaee................erpevvfvtlpsstsskdllrellralg 65  
                  G s +GKT llr l++  + +  ++e                +++  + + ++++ ++++++ +++   g
  KIR66129.1 1119 GDSQSGKTNLLRHLARMIVGRFTPAEarilvvdyrrqlfdtiPDDYRLGYSVSADATRETIADAVAGLKG 1188
                  8999************999988888877777765554444444444445555555555555555555444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00032      0.25       5      37 ..     479     510 ..     477     516 .. 0.84
   2 ?    3.3   0.0     0.087        68       7      36 ..     836     862 ..     832     869 .. 0.77
   3 ?   -2.6   0.0       5.7   4.4e+03      83     127 ..     941     980 ..     894    1001 .. 0.68
   4 ?    1.5   0.0      0.31   2.5e+02       7      24 ..    1119    1136 ..    1117    1154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00032
                 EEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEE CS
       NACHT   5 lqGeaGsGKTtLlqklalawaegklpqgafklv 37 
                 l G+ GsGK+ Ll+ l+la+a  +  +    lv
  KIR66129.1 479 LIGATGSGKSELLRTLVLALAVTHSSET-LNLV 510
                 78*******************9997664.3554 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.087
                 C-TTTCHHHHHHHHHHHHCTS-SCCCC-SE CS
       NACHT   7 GeaGsGKTtLlqklalawaegklpqgafkl 36 
                 G   sGK+tL++ l+ a+a  + p +   +
  KIR66129.1 836 GGTRSGKSTLIRTLICALALTHRPTD---V 862
                 44459**************9998885...3 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 5.7
                 EEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEE CS
       NACHT  83 lLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltv 127
                 + l++Dg   l++++++     +++ L+e+  + l  +++l++++
  KIR66129.1 941 VFLVVDGWFTLRQEFEP-----LEVSLREIAARGLNFGVHLIVSA 980
                 33888888888876666.....88888888888888888887765 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.31
                  C-TTTCHHHHHHHHHHHH CS
       NACHT    7 GeaGsGKTtLlqklalaw 24  
                  G++ sGKT Ll++la+ +
  KIR66129.1 1119 GDSQSGKTNLLRHLARMI 1136
                  77779*********9876 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.3   0.00026       0.2       8      61 ..     455     515 ..     450     521 .. 0.75
   2 !    8.4   0.9    0.0027       2.1      22      48 ..     828     854 ..     820     860 .. 0.85
   3 ?    0.8   0.0      0.55   4.3e+02      32      60 ..    1121    1152 ..    1113    1154 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00026
       DUF87   8 sgsevpvyldlnkl....vtrHlAilgsTGsGKSntvavLleelle...kkgatililDpH 61 
                 ++++ pv ld+++        H   +g TGsGKS + + L+  l+    +  ++++++D  
  KIR66129.1 455 DATGAPVELDIKESalggMGPHGMLIGATGSGKSELLRTLVLALAVthsSETLNLVLVDFK 515
                 7788888888865422223689999***************999988565555577777765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0027
       DUF87  22 vtrHlAilgsTGsGKSntvavLleell 48 
                 v  H+++ g T sGKS++++ L+  l+
  KIR66129.1 828 VGGHIGVAGGTRSGKSTLIRTLICALA 854
                 678*******************99876 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.55
       DUF87   32 TGsGKSntvavLleelle...kkgatililDp 60  
                  + sGK+n+ + L + ++       a+il++D 
  KIR66129.1 1121 SQSGKTNLLRHLARMIVGrftPAEARILVVDY 1152
                  559**************99876778****995 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.013       9.8       3      24 ..     478     499 ..     476     522 .. 0.83
   2 !    9.6   0.0    0.0012      0.93       2      24 ..     832     854 ..     831     880 .. 0.84
   3 ?   -2.3   0.0         6   4.7e+03       6      21 ..    1119    1134 ..    1118    1147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.013
                 EEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgeka 24 
                 +++G + +GKS L+++l+ + a
  KIR66129.1 478 MLIGATGSGKSELLRTLVLALA 499
                 69***************97644 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0012
                 EEEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgeka 24 
                 ++++G + +GKStLi++l+ + a
  KIR66129.1 832 IGVAGGTRSGKSTLIRTLICALA 854
                 89****************97644 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 6
                  ESTTSSHHHHHHHHHT CS
    MMR_HSR1    6 GrpNvGKStLinaltg 21  
                  G + +GK+ L++ l +
  KIR66129.1 1119 GDSQSGKTNLLRHLAR 1134
                  88899*******9986 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1   0.00077       0.6      90     119 ..     477     506 ..     471     512 .. 0.85
   2 !    6.1   0.0    0.0051         4      89     122 ..     832     864 ..     821     868 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00077
  Adeno_IVa2  90 GviyGPtGsGksqllrnlissklisPiPet 119
                 G++ G tGsGks+llr+l+ +  +    et
  KIR66129.1 477 GMLIGATGSGKSELLRTLVLALAVTHSSET 506
                 8999**************988777777776 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0051
  Adeno_IVa2  89 iGviyGPtGsGksqllrnlissklisPiPetvif 122
                 iGv  G t sGks l+r+li +  +   P  v f
  KIR66129.1 832 IGV-AGGTRSGKSTLIRTLICALALTHRPTDVQF 864
                 665.6889************99999988888877 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.3    0.0011      0.84      24      43 ..     476     495 ..     466     508 .. 0.77
   2 !    6.8   0.1    0.0072       5.6      24      42 ..     831     849 ..     817     859 .. 0.75
   3 ?   -0.4   0.0       1.3     1e+03      28      39 ..    1118    1129 ..    1108    1139 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0011
      AAA_29  24 atlltGpsGsGKSTllDAiq 43 
                   +l+G++GsGKS ll  + 
  KIR66129.1 476 HGMLIGATGSGKSELLRTLV 495
                 4599*********9985544 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0072
      AAA_29  24 atlltGpsGsGKSTllDAi 42 
                  + ++G + sGKSTl+  +
  KIR66129.1 831 HIGVAGGTRSGKSTLIRTL 849
                 56689**********9554 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.3
      AAA_29   28 tGpsGsGKSTll 39  
                   G+s sGK+ ll
  KIR66129.1 1118 LGDSQSGKTNLL 1129
                  59******9998 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.027        21       3      25 ..     479     501 ..     478     519 .. 0.82
   2 ?    4.2   0.0     0.071        55       3      25 ..     834     856 ..     832     868 .. 0.77
   3 ?    4.5   0.0     0.058        45       5      34 ..    1119    1147 ..    1116    1164 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.027
  RNA_helicase   3 lyGpsgeGKStlakeLakallkk 25 
                   l G++g GKS l ++L+ al+ +
    KIR66129.1 479 LIGATGSGKSELLRTLVLALAVT 501
                   78*************99999844 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.071
  RNA_helicase   3 lyGpsgeGKStlakeLakallkk 25 
                   + G ++ GKStl+++L+ al+ +
    KIR66129.1 834 VAGGTRSGKSTLIRTLICALALT 856
                   67999***********9999844 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.058
  RNA_helicase    5 GpsgeGKStlakeLakallkklklkkkdsv 34  
                    G+s+ GK++l ++La+ + +++ ++ + ++
    KIR66129.1 1119 GDSQSGKTNLLRHLARMIVGRF-TPAEARI 1147
                    999***************9988.5555555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1    0.0028       2.2      15      32 ..     478     495 ..     472     514 .. 0.85
   2 ?    5.3   0.6     0.034        27      11      32 ..     829     850 ..     822     857 .. 0.87
   3 ?    1.0   0.0      0.74   5.7e+02      17      34 ..    1118    1135 ..    1114    1159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0028
                 EEEESTTSSHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlklla 32 
                  ++G +G+GKS Ll++l 
  KIR66129.1 478 MLIGATGSGKSELLRTLV 495
                 69*************986 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.034
                 TSEEEEEESTTSSHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  11 gekvaivGenGaGKStLlklla 32 
                 g  +++ G + +GKStL+++l+
  KIR66129.1 829 GGHIGVAGGTRSGKSTLIRTLI 850
                 5678999************986 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.74
                  EESTTSSHHHHHHHHTTS CS
                  xxxxxxxxxxxxxxxxxx RF
    ABC_tran   17 vGenGaGKStLlkllagl 34  
                  +G++ +GK+ Ll+ la++
  KIR66129.1 1118 LGDSQSGKTNLLRHLARM 1135
                  69999******9988875 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.3    0.0054       4.2      35      59 ..     476     501 ..     453     521 .. 0.78
   2 ?    5.3   0.0     0.016        13      10      61 ..     805     858 ..     800     866 .. 0.87
   3 ?   -2.2   0.0       3.4   2.6e+03      40      60 ..    1119    1138 ..    1106    1152 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0054
      AAA_25  35 lallaGapgtGKttlaldlalava.t 59 
                  ++l+Ga+g+GK+ l+  l+la+a t
  KIR66129.1 476 HGMLIGATGSGKSELLRTLVLALAvT 501
                 579************98888888732 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.016
      AAA_25  10 vsvadlaapppprrwlvk.gllpagelallaGapgtGKttlaldlalava.tGk 61 
                 v+ +++++p +++r+l+  +l   g+ + +aG + +GK+tl   l +a+a t +
  KIR66129.1 805 VPLGFIDKPYEQLRDLLTvDLSGVGGHIGVAGGTRSGKSTLIRTLICALAlTHR 858
                 567889999999999999999999***********************9995544 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.4
      AAA_25   40 GapgtGKttlaldlalavatG 60  
                  G++ +GKt l+ +la  ++ G
  KIR66129.1 1119 GDSQSGKTNLLRHLARMIV-G 1138
                  8899*******99998777.3 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0058       4.5       5      34 ..     481     509 ..     477     523 .. 0.85
   2 ?    4.5   0.0     0.032        25       5      29 ..     833     858 ..     832     865 .. 0.72
   3 ?    0.6   0.0      0.49   3.9e+02       9      36 ..    1123    1147 ..    1123    1169 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0058
  Viral_helicase1   5 GvpGcGKStlirkllrtsliltvnrptael 34 
                      G+ G+GKS l+r+l+   l +t +++t +l
       KIR66129.1 481 GATGSGKSELLRTLVLA-LAVTHSSETLNL 509
                      99*************98.777777777666 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.032
  Viral_helicase1   5 GvpG...cGKStlirkllrtsliltvnr 29 
                      Gv+G   +GKStlir+l++      ++r
       KIR66129.1 833 GVAGgtrSGKSTLIRTLICA--LALTHR 858
                      55555559**********98..444444 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.49
  Viral_helicase1    9 cGKStlirkllrtsliltvnrptaellt 36  
                       +GK+ l+r+l+r+  i+   +p ae++ 
       KIR66129.1 1123 SGKTNLLRHLARM--IVGRFTP-AEARI 1147
                       8************..7777777.66665 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.061        47       3      31 ..     478     506 ..     477     516 .. 0.80
   2 ?    0.2   0.0       1.1   8.4e+02       4      20 ..     834     850 ..     831     864 .. 0.85
   3 !    8.0   0.0    0.0041       3.2       5      39 ..    1118    1155 ..    1114    1165 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.061
                 EEESSTTSSHHHHHHCHCT-CCC-EEETT CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekst 31 
                 +l+G +g+GK+ ll+ +v     +++++t
  KIR66129.1 478 MLIGATGSGKSELLRTLVLALAVTHSSET 506
                 79*************99876665555555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.1
                 EESSTTSSHHHHHHCHC CS
         Roc   4 lvGdsgvGKtsllkrfv 20 
                 + G +++GK++l++ ++
  KIR66129.1 834 VAGGTRSGKSTLIRTLI 850
                 67999********9886 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0041
                  ESSTTSSHHHHHHCHCT...-CCC-EEETTTTEEEEEE CS
         Roc    5 vGdsgvGKtsllkrfve...dkfsekekstigvdfltk 39  
                  +Gds++GKt ll+++ +   ++f++ e  ++ vd+ ++
  KIR66129.1 1118 LGDSQSGKTNLLRHLARmivGRFTPAEARILVVDYRRQ 1155
                  9**********987655333888888888888888765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.037        29       2      20 ..     478     496 ..     478     558 .. 0.79
   2 ?    4.0   0.3     0.089        69       1      18 [.     832     849 ..     832     907 .. 0.82
   3 ?    3.0   0.0      0.18   1.4e+02       5      25 ..    1119    1146 ..    1118    1192 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.037
      AAA_18   2 lltGtpGvGKttlakeLsk 20 
                 +l G+ G+GK++l + L  
  KIR66129.1 478 MLIGATGSGKSELLRTLVL 496
                 589************9943 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.089
      AAA_18   1 IlltGtpGvGKttlakeL 18 
                 I+++G  ++GK+tl + L
  KIR66129.1 832 IGVAGGTRSGKSTLIRTL 849
                 899************998 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.18
      AAA_18    5 GtpGvGKttlakeLskrl.gf......g 25  
                  G + +GKt l ++L+++  g        
  KIR66129.1 1119 GDSQSGKTNLLRHLARMIvGRftpaeaR 1146
                  7788************965446666662 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0045       3.5      12      62 ..     476     526 ..     467     611 .. 0.58
   2 ?    1.8   0.1      0.35   2.7e+02      11      45 ..     830     864 ..     823     874 .. 0.79
   3 ?    0.7   0.0      0.77     6e+02      21      60 ..    1123    1162 ..    1115    1229 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0045
      AAA_19  12 vllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerl 62 
                 + ++++  G+GK+++l++ v  l  +++ +  +++lv f g A+    +rl
  KIR66129.1 476 HGMLIGATGSGKSELLRTLVLALAVTHSSETLNLVLVDFKGGATFLGLDRL 526
                 6789*******************9999999999999988888875555555 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.35
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeei 45 
                 +++ v +G  +GK++++++ +  l  +++    ++
  KIR66129.1 830 GHIGVAGGTRSGKSTLIRTLICALALTHRPTDVQF 864
                 578899*************9988887775544555 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.77
      AAA_19   21 tGKTrvlkhivallvelggvkpeeillvaftgrAakelre 60  
                  +GKT +l+h  +++v + + + ++il+v + ++  + + +
  KIR66129.1 1123 SGKTNLLRHLARMIVGRFTPAEARILVVDYRRQLFDTIPD 1162
                  8********9999998887777888888877776666655 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00085      0.67      17      54 ..     476     517 ..     473     533 .. 0.77
   2 ?    1.0   0.2       0.2   1.6e+02      16      38 ..     830     852 ..     823     859 .. 0.90
   3 ?   -0.8   0.0      0.69   5.3e+02      17      52 ..    1114    1153 ..    1106    1164 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00085
  TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairarg....draivlDltGa 54 
                    h +++G+tGsGK++ l+ l+ a+           + +D++G 
     KIR66129.1 476 HGMLIGATGSGKSELLRTLVLALAVTHssetLNLVLVDFKGG 517
                    889***************987665443222245666677665 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.2
  TrwB_AAD_bind  16 qhilivGttGsGKtqalekllra 38 
                     hi ++G+t sGK++ ++ l+ a
     KIR66129.1 830 GHIGVAGGTRSGKSTLIRTLICA 852
                    59*****************9865 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.69
  TrwB_AAD_bind   17 hilivGttGsGKtqalekllrairarg....draivlDlt 52  
                     h+  +G   sGKt+ l++l r i  r      r++v+D  
     KIR66129.1 1114 HLTGLGDSQSGKTNLLRHLARMIVGRFtpaeARILVVDYR 1153
                     6667788889*********999988755555888888876 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1    0.0011      0.82       3      25 ..     478     500 ..     477     537 .. 0.78
   2 ?   -0.3   0.0      0.95   7.4e+02      10      23 ..     840     853 ..     840     878 .. 0.80
   3 ?    0.0   0.0      0.77     6e+02      10      22 ..    1123    1135 ..    1119    1168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0011
      AAA_21   3 vliGpNgsGKSnLLdaldllarl 25 
                 +liG+ gsGKS LL++l l+  +
  KIR66129.1 478 MLIGATGSGKSELLRTLVLALAV 500
                 69***************998765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.95
      AAA_21  10 sGKSnLLdaldlla 23 
                 sGKS+L+++l ++ 
  KIR66129.1 840 SGKSTLIRTLICAL 853
                 9********97664 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.77
      AAA_21   10 sGKSnLLdaldll 22  
                  sGK+nLL+ l  +
  KIR66129.1 1123 SGKTNLLRHLARM 1135
                  9******988655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0045       3.5       3      26 ..     478     501 ..     477     558 .. 0.87
   2 ?    0.2   0.0      0.97   7.5e+02      10      24 ..     840     854 ..     832     929 .. 0.86
   3 ?   -1.9   0.0       4.3   3.4e+03       8      21 ..    1121    1134 ..    1118    1175 .. 0.83
   4 ?   -0.8   0.0       1.9   1.5e+03      73     118 ..    1246    1292 ..    1239    1312 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0045
      AAA_33   3 llvGlpGsGKstlaerllkklgav 26 
                 +l+G+ GsGKs l++ l+ +l+++
  KIR66129.1 478 MLIGATGSGKSELLRTLVLALAVT 501
                 79***************9666644 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.97
      AAA_33  10 sGKstlaerllkklg 24 
                 sGKstl++ l+ +l+
  KIR66129.1 840 SGKSTLIRTLICALA 854
                 9*******9976665 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4.3
      AAA_33    8 pGsGKstlaerllk 21  
                  + sGK+ l+++l++
  KIR66129.1 1121 SQSGKTNLLRHLAR 1134
                  5699**99999986 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.9
      AAA_33   73 vildat.nlsrrerarflklarrlgvpvrivvvetdeetlkeRlakR 118 
                  v+++ t nl+r  ++ +l+ ++++++p++++ + + e  l   ++ R
  KIR66129.1 1246 VVVRGTaNLMRMSMDPLLRRLQEANSPDLALSCPPTEGPLLGGVKGR 1292
                  444555699999********************999887666666665 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.024        19     134     154 ..     479     499 ..     473     513 .. 0.76
   2 ?    6.1   0.0    0.0063       4.9     131     153 ..     831     853 ..     811     859 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.024
       T2SSE 134 vsGgTgsGKttllyallkein 154
                 + G+TgsGK+ ll +l+  ++
  KIR66129.1 479 LIGATGSGKSELLRTLVLALA 499
                 45***********99887665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0063
       T2SSE 131 lilvsGgTgsGKttllyallkei 153
                  i v+GgT sGK+tl+ +l+  +
  KIR66129.1 831 HIGVAGGTRSGKSTLIRTLICAL 853
                 6779***********99987655 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.006       4.7      22      56 ..     475     513 ..     467     534 .. 0.82
   2 ?    2.9   0.0     0.052        41     265     312 ..     613     660 ..     591     663 .. 0.86
   3 ?   -3.3   0.0       4.1   3.2e+03      26      47 ..     834     855 ..     830     858 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.006
      AAA_10  22 sasliiGdlGnGKSvlakllvlyisllg....gkaliiD 56 
                 ++ ++iG +G GKS l ++lvl +++        ++++D
  KIR66129.1 475 PHGMLIGATGSGKSELLRTLVLALAVTHssetLNLVLVD 513
                 6889*****************998877644444555566 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.052
      AAA_10 265 lvRiGRsynaavylvtqsadDvlkeelknniglklaFretdkeeikkv 312
                 + R GRs    ++l++q +dD    +l+  +++++  r     e ++v
  KIR66129.1 613 IGRLGRSLAVHLLLASQRVDDGRIGQLESHLSYRIGLRTFSAMESRSV 660
                 569*******************************99997777776665 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 4.1
      AAA_10  26 iiGdlGnGKSvlakllvlyisl 47 
                 + G++  GKS l+++l+  ++l
  KIR66129.1 834 VAGGTRSGKSTLIRTLICALAL 855
                 789999*********9987766 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.074        58      24      43 ..     479     498 ..     476     508 .. 0.87
   2 ?    5.2   0.1     0.034        27      20      45 ..     830     857 ..     813     878 .. 0.74
   3 ?   -1.4   0.0       3.5   2.7e+03      26      50 ..    1119    1143 ..    1118    1161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.074
      AAA_23  24 ItGpNGaGKTTildAiklaL 43 
                 ++G +G+GK+ +l+ + laL
  KIR66129.1 479 LIGATGSGKSELLRTLVLAL 498
                 68************999998 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.034
      AAA_23  20 gltlItGpNGaGKTTildAik..laLyg 45 
                 g   + G + +GK+T+++ +   laL++
  KIR66129.1 830 GHIGVAGGTRSGKSTLIRTLIcaLALTH 857
                 677789***********87762244555 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 3.5
      AAA_23   26 GpNGaGKTTildAiklaLygetprl 50  
                  G+  +GKT +l+ +  +  g++++ 
  KIR66129.1 1119 GDSQSGKTNLLRHLARMIVGRFTPA 1143
                  8899********9998888876554 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.67   5.2e+02       4      24 ..     479     499 ..     478     504 .. 0.87
   2 ?    3.6   0.1     0.072        56       2      24 ..     832     854 ..     831     860 .. 0.89
   3 ?    3.0   0.0      0.11        86       6      24 ..    1119    1137 ..    1115    1158 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.67
        MobB   4 ivgksgsGKTtLleklipelk 24 
                 ++g  gsGK  Ll  l+ +l+
  KIR66129.1 479 LIGATGSGKSELLRTLVLALA 499
                 7899************98875 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.072
        MobB   2 lgivgksgsGKTtLleklipelk 24 
                 +g++g   sGK tL+  li +l+
  KIR66129.1 832 IGVAGGTRSGKSTLIRTLICALA 854
                 78999**************8875 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.11
        MobB    6 gksgsGKTtLleklipelk 24  
                  g s+sGKT Ll +l +++ 
  KIR66129.1 1119 GDSQSGKTNLLRHLARMIV 1137
                  889*********9987765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.014        11       4      47 ..     476     530 ..     473     570 .. 0.83
   2 ?    0.8   0.1      0.45   3.5e+02       5      33 ..     832     871 ..     830     879 .. 0.70
   3 ?   -0.5   0.0       1.1   8.5e+02       9      27 ..    1119    1136 ..    1115    1154 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.014
      AAA_24   4 kiliyGpsgiGKTtlakel...........gpkplfidtekGlksldadkfpdie 47 
                   +++G  g+GK+ l+++l           + + +++d+ +G+  l  d++p  +
  KIR66129.1 476 HGMLIGATGSGKSELLRTLvlalavthsseTLNLVLVDFKGGATFLGLDRLPHTS 530
                 6799***************888888888777778888999999888888888665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.45
      AAA_24   5 iliyGpsgiGKTtlakel...........gpkplfidtek 33 
                 i + G   +GK+tl+++l             ++ ++d+ +
  KIR66129.1 832 IGVAGGTRSGKSTLIRTLicalalthrptDVQFYCLDFGG 871
                 6789999*********996666665554444445555555 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.1
      AAA_24    9 GpsgiGKTtlakelgpkpl 27  
                  G+s +GKT l+++l  + +
  KIR66129.1 1119 GDSQSGKTNLLRHL-ARMI 1136
                  99**********99.5544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.51
# Mc/sec: 7762.58
//
Query:       KIR66130.1  [L=462]
Description: hypothetical protein TK50_12985 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-17   62.4   0.9    1.9e-16   60.5   0.9    2.1  1  YukD      WXG100 protein secretion system (Wss), protein YukD


Domain annotation for each model (and alignments):
>> YukD  WXG100 protein secretion system (Wss), protein YukD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.9   1.1e-20   1.9e-16       2      76 .]      10      85 ..       9      85 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 1.1e-20
                EEEEEE-TTTEEEEEEETTSBTTHHHHHHHHHS-....--S---TT-EEEEGGGEEEETTSBCGGGT--TT-EEEE CS
        YukD  2 vrVtvlagnrrvDlaLPadvpvaellpalvrllg.epddeagrpggwsLarvggapLsgdrtLaeagVrDGdlLvL 76
                +r+ v ++ r++++a+Pa v va+llpal+ +lg + +d++ ++ggw+L+r+g apL+++ + a+++ +DGdl +L
  KIR66130.1 10 CRLVVRGPSRQIEVAVPAGVVVADLLPALLHHLGdGLADTGLGHGGWVLQRAGAAPLDEESSVAALDLHDGDLVYL 85
                999*******************************9999**********************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3045.10
//
Query:       KIR66131.1  [L=464]
Description: hypothetical protein TK50_12990 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-84  282.4   7.3    6.6e-84  282.2   7.3    1.0  1  T7SS_ESX1_EccB  Type VII secretion system ESX-1, transport TM


Domain annotation for each model (and alignments):
>> T7SS_ESX1_EccB  Type VII secretion system ESX-1, transport TM domain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.2   7.3   3.7e-88   6.6e-84       4     462 ..       3     459 ..       1     463 [. 0.88

  Alignments for each domain:
  == domain 1  score: 282.2 bits;  conditional E-value: 3.7e-88
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.SS..SEEEETTT--EEEEETTEEEEES- CS
  T7SS_ESX1_EccB   4 ttrdqvsgyrFllrRlehAlvrrdvrmlddplrsqsrallvGvvlavvvlagaavlallkPqgkvg.ds..kivadkesgalYvvvdgtLhPvlN 95 
                     ++rdqv++   ll Rl +Alv  d++ l+ p r+++ +ll+G+++a++v++g+ +++++ P g++  +   ++v++ke+g++Y+++dg+L+PvlN
      KIR66131.1   3 SRRDQVQAQSHLLGRLSAALVAGDPDGLETPHRRTTVGLLAGILVAALVAGGFTLYGFFAPGGATAwRRagALVVEKETGSRYLFLDGRLRPVLN 97 
                     68**************************************************************9964468************************ PP

                     HHHHHHHCTS-B--EEE-HHHHHTS-B--EBS-TTS-S---B-SS.SSCEEEEEEEECSTTSS-EEEEEEEES----BTTEEE--TTEEEEEEE. CS
  T7SS_ESX1_EccB  96 laSArLilgkaakpttvkdseLdklprGplvGIpgAPealpqsadldeskWtvCDtvssaasasavettviagklalgaraaelaadqavLvsa. 189
                     +aSArL+lg++ +++tv+ ++L+ + +G++vGI+gAP+ lp+ +  + ++Wt C  ++++   + +ett++    a++a++++l+ad+a+L++  
      KIR66131.1  98 YASARLLLGEDLAVVTVSAKSLRGVAHGQPVGIVGAPDVLPAGGL-AGAHWTACAPAATD--LAGTETTALTLAVAATADGTALPADRALLARPa 189
                     *****************************************9776.********876554..56777777777789****************997 PP

                     ..TTEEEEEETTEEEEE-TTSHHHHHCCT--TS--EE--HHHHHHS-EEEESS----TTTTSB-TTSS-TTSBTT-EEEEEET.TEEEEEEEETT CS
  T7SS_ESX1_EccB 190 ..dgktyLvydgkraeidladravtrAlglegakprpvsagllnalpevpplkaPaipgaGkpaglelggkarvGsvvkvsdadgeeeyYvvlsd 282
                        ++ +L+++g+r ++  + + + + lg +g++ ++v a++l+ lp++p+l + a+pg+G++ ++  g+++rvG+++++++a+g+e++Y++++d
      KIR66131.1 190 gdPAAGHLIWNGRRFRL--TAPWLPAVLGHDGPA-VTVPAAWLDLLPAGPDLGPVAVPGRGEAGPVVDGQPTRVGQLFTARTAEGSERHYLLRRD 281
                     766789*********87..699999999999875.59*************************99999999************************* PP

                     EEEEE-HHHHHHHHHH.....T-TT-SS.--EE-CCHCCCS-E-----....--SS--EEE-TTTS-EEEEEEEE-STTSS-EEEEEEESS-SS- CS
  T7SS_ESX1_EccB 283 glqrvtevvadllrna.....nsqglte.pptvepdvlaklpvveelpvda.yPekppkivdvkeapvlCaswekgagdarakvallagaalPvp 370
                     gl r+t+++++ll ++      + g +  p+ ++p +la+lpv+++ p  + +Pe +p++ +++     C+++  +      + +++a +a+ ++
      KIR66131.1 282 GLVRLTPLAYALLAADpatvaGYDGRAVvPTPLSPAALARLPVAARPPLADeLPEVAPTAASRGPGLAWCLRFGADG-----RPRVVAARAVTAS 371
                     ****************9999844444444999**********9999888777********************96653.....3344445554222 PP

                     GCCGEEE-TTSSEE......EEESSBE...EEEEEECSTT..CEEEEEEEETTSEEEEE-SHHHHHHCT--S..-EE--HHHHTTSEEEEEE-C CS
  T7SS_ESX1_EccB 371 ekaktvelvsadgsgatvdavylppgtg.alvqatgaepaseargslfyvsdtGvRYgipdeetakaLGlkee.pepaPwsilkllpaGPtLsr 462
                        +    v  +++++t+dav+++pg g  lv   g ep+       ++v+d Gv+Y ++  ++a++LG+  + ++ +   +++llp+GPtL++
      KIR66131.1 372 GTVRG--GVGVTRTARTADAVAVAPGLGgLLVAGRGGEPG----TGYYLVTDAGVKYPLAGGAVAERLGYPPAnATVVSPDLIDLLPTGPTLDP 459
                     22222..3334456789*********75267888888887....799***********************98878889999***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3587.02
//
Query:       KIR66132.1  [L=98]
Description: hypothetical protein TK50_12995 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-07   31.9   5.4    1.6e-07   31.4   5.4    1.2  1  WXG100    Proteins of 100 residues with WXG
  ------ inclusion threshold ------
       0.02   15.3   0.6       0.15   12.5   0.0    2.1  2  HiaBD2    HiaBD2_N domain of Trimeric autotransporter adhesin


Domain annotation for each model (and alignments):
>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   5.4   1.8e-11   1.6e-07       4      85 ..       7      88 ..       6      89 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.8e-11
                SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  4 vdpeelrqaaarfqkqaeeledelqrlkaevdalqsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaanafedaD 85
                vd + +r+++++++++ ++  +++++++++ + l  +W+G+a++ f + +++w +++ k++++L +++ a+++  ++ ++++
  KIR66132.1  7 VDEQTIRSTISAMNQTDAQCDAAQRAVDNTASFLDTQWRGEAKTVFTNSIQQWLEGLSKVKQGLLDLNVAMTSHYQTSAQVE 88
                78899*************************************************************9999888777766666 PP

>> HiaBD2  HiaBD2_N domain of Trimeric autotransporter adhesin (GIN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.3     0.044   3.9e+02      11      27 ..      22      38 ..      11      49 .. 0.81
   2 ?   12.5   0.0   1.7e-05      0.15      15      43 ..      49      77 ..      38      88 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.044
      HiaBD2 11 gdTnfnaannsaadlak 27
                +d++ +aa+ +++++a 
  KIR66132.1 22 TDAQCDAAQRAVDNTAS 38
                58888888888888876 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.7e-05
      HiaBD2 15 fnaannsaadlakqvdgAknGLvnLnekg 43
                + + +ns+++    +  +k+GL++Ln   
  KIR66132.1 49 KTVFTNSIQQWLEGLSKVKQGLLDLNVAM 77
                335589********************665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       907  (0.0505884); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 762.99
//
Query:       KIR66133.1  [L=98]
Description: hypothetical protein TK50_13000 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-12   46.9   0.7    2.6e-12   46.8   0.7    1.0  1  WXG100          Proteins of 100 residues with WXG
     0.0057   17.1   1.0     0.0069   16.8   1.0    1.1  1  T7SS_ESX_EspC   Excreted virulence factor EspC, type VII ESX 
  ------ inclusion threshold ------
      0.018   15.0   0.2      0.022   14.7   0.2    1.1  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
      0.037   14.6   0.0      0.048   14.3   0.0    1.2  1  QIL1            MICOS complex subunit MIC13, QIL1
      0.054   13.5   0.1      0.068   13.2   0.1    1.1  1  DUF1640         Protein of unknown function (DUF1640)
      0.059   13.8   2.2      0.076   13.5   2.2    1.2  1  HsbA            Hydrophobic surface binding protein A
      0.063   13.1   0.4        2.8    7.8   0.1    2.1  2  DASH_Duo1       DASH complex subunit Duo1
       0.11   12.7   0.3       0.23   11.7   0.3    1.7  1  CBP             Fungal calcium binding protein


Domain annotation for each model (and alignments):
>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.7   1.2e-15   2.6e-12       5      82 ..       7      84 ..       3      88 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 1.2e-15
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  5 dpeelrqaaarfqkqaeeledelqrlkaevdalqsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaanafe 82
                +p+ l +++a++q+  +++++++++l+  v+   ++ sG++++af a++++w+ +++++ +aL+  s+ l+q++++++
  KIR66133.1  7 NPNGLLDSSAELQGVTNSIQNAIDELNTVVQTYVNANSGDTREAFTAAQAKWNTGINEMRQALAAASSRLDQIHDNYR 84
                89999************************************************************************8 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.0   3.1e-06    0.0069       9      95 ..       8      91 ..       4      96 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.1e-06
  T7SS_ESX_EspC  9 pdhlrelaakhdevaaeiasavaaaagasaavldshGpicaatndavaaaeaarraagealaaasteLadkLraAAaaYeatDeeaa 95
                   p  l   +a++++v   i++a +      + v++   + + +t+ a++aa+a  ++ ++++++a++  + +L++  ++Y   D + a
     KIR66133.1  8 PNGLLDSSAELQGVTNSIQNAIDEL---NTVVQTYVNANSGDTREAFTAAQAKWNTGINEMRQALAAASSRLDQIHDNYRLGDARGA 91
                   6667777888888888888888888...5666666667899**************************************99998877 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   9.6e-06     0.022     125     182 ..      20      77 ..      13      84 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.6e-06
                     HHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS--XXXXXXX CS
  Apolipoprotein 125 elrqklaerleelkeslaphaeeveerlssrveelrekleeqaeelrerleanleelk 182
                      + ++++  ++el+  +++++ +     ++  +++++k+++ ++e+r+ l a++++l 
      KIR66133.1  20 GVTNSIQNAIDELNTVVQTYVNANSGDTREAFTAAQAKWNTGINEMRQALAAASSRLD 77 
                     4567888889999999999999888899999999999999999999999988888775 PP

>> QIL1  MICOS complex subunit MIC13, QIL1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.1e-05     0.048       4      73 ..       9      75 ..       7      79 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.1e-05
        QIL1  4 qGlWgsseeteelykkakeyipPyvdevkkklclevpklpsveevkfslveyWNkgVkkvfsflselPty 73
                +Gl++ss+e + + + ++++i +    v+ ++     +   ++e    ++ +WN g+++  ++l+ + ++
  KIR66133.1  9 NGLLDSSAELQGVTNSIQNAIDELNTVVQTYV---NANSGDTREAFTAAQAKWNTGINEMRQALAAASSR 75
                79********************9999999999...4456667777778************9999988766 PP

>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     3e-05     0.068      86     148 ..      16      78 ..      12      82 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3e-05
     DUF1640  86 releklkqkLreeidklkadirldlnleKgrireelakleakiqelnnkidrevsalrteiEs 148
                  el+ +++++++ id+l+  ++  +n   g++re +++ +ak +   n + + ++a ++ +++
  KIR66133.1  16 AELQGVTNSIQNAIDELNTVVQTYVNANSGDTREAFTAAQAKWNTGINEMRQALAAASSRLDQ 78 
                 6999*************************************9999999999999888887776 PP

>> HsbA  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.2   3.4e-05     0.076       3      53 ..      17      66 ..      15      82 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.4e-05
                HHHHHHHHHHHHHHHHHHHHHH--SH..HHHHHHHHHHHHHHHHHHHHHHH CS
        HsbA  3 tvisdittistavtaldtavnafnGgasalpilsasnalvsaikkattdaq 53
                +++ + ++i++a++ l+t v+++ + a+     +a++a +++ +++++  +
  KIR66133.1 17 ELQGVTNSIQNAIDELNTVVQTYVN-ANSGDTREAFTAAQAKWNTGINEMR 66
                56778899***************55.2345666666666666666665433 PP

>> DASH_Duo1  DASH complex subunit Duo1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0012       2.8      16      41 ..      18      43 ..      11      44 .. 0.80
   2 ?    3.5   0.0     0.027        60      12      35 ..      58      81 ..      54      84 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
   DASH_Duo1 16 ienviesLkkaksniervketvestn 41
                +++v++s+++a +++++v +t  ++n
  KIR66133.1 18 LQGVTNSIQNAIDELNTVVQTYVNAN 43
                67888888888888888888888777 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.027
   DASH_Duo1 12 inevienviesLkkaksniervke 35
                 n+ i+ ++++L +a+s +++++ 
  KIR66133.1 58 WNTGINEMRQALAAASSRLDQIHD 81
                58889999*********9999986 PP

>> CBP  Fungal calcium binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3    0.0001      0.23       3      27 ..      23      47 ..      21      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
         CBP  3 pavtsAldelkeavetftkakeaag 27
                 ++++A+del+  v+t+ +a++ + 
  KIR66133.1 23 NSIQNAIDELNTVVQTYVNANSGDT 47
                68******************99764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1126  (0.0628033); expected 358.6 (0.02)
Passed bias filter:                      833  (0.046461); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 771.26
//
Query:       KIR66134.1  [L=129]
Description: hypothetical protein TK50_13005 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.011   15.8   0.4      0.016   15.2   0.4    1.2  1  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
       0.13   12.1   0.1       0.17   11.8   0.1    1.2  1  DUF240        Domain of unknown function (DUF240)


Domain annotation for each model (and alignments):
>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.4   1.8e-06     0.016      31     106 ..      12      91 ..       8     114 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.8e-06
  Baculo_PEP_C  31 qilaqlatlldaietqLnalsedlksllaeldt....rldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNins 106
                   qi+a+l++l da++t  +   + +++ l +l+        +  +++ d++n+  dtl +++t+  + +++L+  +t + +
    KIR66134.1  12 QIIAKLNSLRDAVDTATSGQGQYVSQTLRDLTVsagtSNFEPGKTIRDQVNKTGDTLLTRMTGYRTTMNSLAVGLTELLA 91 
                   66777777777777777666666666666665533222223346677777777777777777777777777777776644 PP

>> DUF240  Domain of unknown function (DUF240)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   1.9e-05      0.17      16      64 ..      40      89 ..      24     105 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.9e-05
      DUF240 16 ldfalqlsTnNFsnleelqesfnkkgndlntqlF.skvkvkkLvsdenDl 64
                 d+++ + T NF   +++++  nk+g++l t++  ++ +++ L ++ ++l
  KIR66134.1 40 RDLTVSAGTSNFEPGKTIRDQVNKTGDTLLTRMTgYRTTMNSLAVGLTEL 89
                4899***********************99887744999999998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 930.66
//
Query:       KIR66135.1  [L=144]
Description: hypothetical protein TK50_13020 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-07   30.9   0.0    3.2e-07   30.5   0.0    1.2  1  YbaB_DNA_bd  YbaB/EbfC DNA-binding family


Domain annotation for each model (and alignments):
>> YbaB_DNA_bd  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.8e-11   3.2e-07       4      86 ..      12      94 ..       9     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.8e-11
                 HHHHHHHHHHHHHHHTTSEEEEEETTTTEEEEEETT--EEEEEE-GGG.G....GS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  YbaB_DNA_bd  4 aqkmqkkmeeaqeelaekevegssggglVkVtvngkgevksikIdpsl.ld...pedkemLedlivaAvndAlkkaeeeaeeemskl 86
                 +++ ++ ++e+q +l ++  ++++++ +V Vtv+ +g+v++ik+  s+ ++   pe    L +l+v ++  A+++a + + +++++l
   KIR66135.1 12 LERQKAAIDEIQGDLHTAYSTVTAKNRAVAVTVDSRGTVTAIKFPTSAyRSmagPE----LGELLVDTIGSARDEALARTVAAFESL 94
                 6788999*****************************************55577777....666666666666666666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1119.10
//
Query:       KIR66136.1  [L=110]
Description: hypothetical protein TK50_13025 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 877.78
//
Query:       KIR66137.1  [L=8358]
Description: hypothetical protein TK50_13030 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-10   41.3   0.6    4.3e-05   24.5   0.3    4.1  2  Gln_amidase  Papain fold toxin 1, glutamine deamidase


Domain annotation for each model (and alignments):
>> Gln_amidase  Papain fold toxin 1, glutamine deamidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.3   2.4e-09   4.3e-05       3     109 ..     621     716 ..     618     718 .. 0.85
   2 !   12.0   0.0   1.8e-05      0.33      41      94 ..    6265    6327 ..    6208    6341 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2.4e-09
  Gln_amidase   3 CvdcslavadtlgGepqvAaplsrdeakgsiepllgergglervedplggklqellgaydklaqelrnagpgsraivivkwegkdvsgHafnavrndn 100
                  Cv    av d + + p+ A+     + + +++p++ er    +  ++lg ++q + +++++++ ++ +agp+++a v v+ +++    Haf +v nd 
   KIR66137.1 621 CVVRLAAVVDEFSAAPRAARV---TRDDATLDPARPER----ELAARLGVDWQPV-ADWAQVVGRVGEAGPNAVAAVLVEPPNAP--RHAFALV-NDG 707
                  444456888999999998888...55566677777777....677889****999.9***************************4..6******.*** PP

  Gln_amidase 101 GavvwlDpQ 109
                  G+++w++ Q
   KIR66137.1 708 GELFWVETQ 716
                  *******99 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.8e-05
  Gln_amidase   41 gglervedplggklqell..........gaydklaqelrnagpgsraivivkwegkdvsgHafn 94  
                    g +r  +++g ++++ +          ++++++ ++l+ a pgs+a+v  +++g+++ gHaf 
   KIR66137.1 6265 VGRTRDDSTIGVRFAGGFagdrsdwavvDSWAQVERALEGAAPGSAAFVLLERPGGAP-GHAFA 6327
                   5566677788888888888999999999******************************.***96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (8358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.32u 0.30s 00:00:02.61 Elapsed: 00:00:00.58
# Mc/sec: 43752.11
//
Query:       KIR66138.1  [L=360]
Description: hypothetical protein TK50_13035 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2455.69
//
Query:       KIR66139.1  [L=849]
Description: hypothetical protein TK50_13045 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 5522.26
//
Query:       KIR66140.1  [L=316]
Description: hypothetical protein TK50_13060 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2483.03
//
Query:       KIR66141.1  [L=235]
Description: hypothetical protein TK50_13070 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-38  133.6   0.1    1.2e-38  133.4   0.1    1.0  1  ThuA      Trehalose utilisation


Domain annotation for each model (and alignments):
>> ThuA  Trehalose utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.4   0.1     7e-43   1.2e-38       1     210 []       5     229 ..       5     229 .. 0.87

  Alignments for each domain:
  == domain 1  score: 133.4 bits;  conditional E-value: 7e-43
                 EEEEEE-..-..SHHHH-...HHHHHH-HHHT-EEEEETTS.G--H.HHHHT-SEEEEE-G..GS-HHHHHH.HHHHHHTT-EEEEEGGG.GS.....H CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
        ThuA   1 rVLvfsgtage.rhdsieaaieaieklgkengfevdatedaavfte.enLaqydvvvflstegevldaaqeaalqryveaGgGfvglhsA.adaeersk 96 
                 r+Lv++g  g+ +h++++ a+e++  +++++g++v+ +e  +v+++ +++a +d+vv++ t    ++++q a l ++v aG+Gf g+h++ +d ++r++
  KIR66141.1   5 RALVVRG--GWeGHEPVR-ATELFLPFLERSGYAVRIEESTDVYADaAEMAGTDLVVQCVTM-SQITPEQVAGLCAAVVAGTGFTGWHGGiVD-SFRMS 98 
                 789****..999******.77****************9988899999*************95.7889999999*****************888.55433 PP

                 ..HHH.HH-SEEEEET...........................TSGGGTT--.SEEEEEEEEE-S---SE..EEEEE...................ETE CS
                 ..xxxxxxxxxxxxxxx.............xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x..xxxxxxxxxxx RF
        ThuA  97 ..wfsgLiGarfvghpp.............vqeatvkvedr..shpateglpeewertdewYnfkpnprgvhvlatvdestyd..p..ngadhPiaWcr 174
                   + + L+G++f++hp              + ++tv+v+d   +hp+t+g+p ++e+ +e+Y++  +++ ++vlat+++      p    ++ P++W+r
  KIR66141.1  99 sdYLH-LVGGQFATHPGkepcerrggaednFLPHTVRVTDLgrQHPITAGIP-DIELVTEQYWV-LHDDLIEVLATTTHPAQPwqPwhRPVTSPAIWTR 194
                 35999.*********7556777777777774458888877555********9.9*********6.4567799*****777666652645599******* PP

                 ...TTEEEEEE----TTSGGG-HHHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThuA 175 eydgkGrvFytalGhteesyeepefrkhllgglkWa 210
                 ++ g+Grv++t++Gh+ + +e+p++r+++ +g+ Wa
  KIR66141.1 195 QW-GAGRVVVTTPGHSLDVLEHPSIRTVIERGMVWA 229
                 **.99******************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1946.40
//
Query:       KIR66142.1  [L=369]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-16   60.3   0.2      5e-16   59.6   0.2    1.3  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
    1.3e-05   25.8   1.0      4e-05   24.3   0.7    1.8  2  NAD_binding_3    Homoserine dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
      0.028   14.7   0.2      0.077   13.3   0.2    1.8  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.19   12.1   0.0       0.32   11.3   0.0    1.4  1  Gp_dh_N          Glyceraldehyde 3-phosphate dehydrogenase, NA


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.2   1.1e-19     5e-16       2     117 ..       6     120 ..       5     122 .. 0.95

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 1.1e-19
                   EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-SS CS
  GFO_IDH_MocA   2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPlatt 98 
                   rv+++G+G i + +l  l ++ +  ++va+ d da+r+ a a+ +  +   ++e+ll+ p+++ v+  t +  h+e+ + a+ agkhv +EKPla+t
    KIR66142.1   6 RVGVVGLGVISRAYLDTLANH-PAVDIVAVADLDASRSAATAAGLPGAEAVSVERLLDRPDVQTVLNLTIPAAHAEISLGAIDAGKHVYVEKPLAAT 101
                   89*************888888.*****************9988877779999********************************************* PP

                   HHHHHHHHHHHHHHTS-EE CS
  GFO_IDH_MocA  99 veeakelvelaekkgklvs 117
                   + + ++ ve+a+ +g++v+
    KIR66142.1 102 LPDGRATVERAAAAGVRVG 120
                   ***************9986 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.7   8.9e-09     4e-05       1     112 [.      11     117 ..      11     121 .. 0.82
   2 ?   -1.2   0.0       0.7   3.1e+03      39      78 ..     201     240 ..     193     251 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 8.9e-09
                    --SHHHHHHHHHHHH---SSEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-S--HHHHTTHHHHHHTTEEEE-S--CGGG- CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqseielelvavadrdsllskdrkallasealtldlddliahldpdvvVEcasseavaelvlkaLkagkdvvtankgalad 96 
                    GlG+i +a l+ l+++++   +++vavad d   s++++a l+ ++   ++++l++++d++ v+ ++ ++a ae+ l a+ agk+v +    a + 
     KIR66142.1  11 GLGVISRAYLDTLANHPA---VDIVAVADLDASRSAATAAGLPGAE-AVSVERLLDRPDVQTVLNLTIPAAHAEISLGAIDAGKHVYVEKPLAAT- 101
                    9****************6...8*******99666666777777665.5689*****99****************************987777776. PP

                    HHHHHHHTSSSTTS-- CS
  NAD_binding_3  97 ealyeeLreaaeanga 112
                    +  +++ +e a a+g+
     KIR66142.1 102 LPDGRATVERAAAAGV 117
                    4555555555555555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.7
                    HHHHT--CB---HHHHHHHHS-EEEEE-..S--HHHHTTHHH CS
  NAD_binding_3  39 kallasealtldlddliahldpdvvVEc..asseavaelvlk 78 
                    ++ l++e++  + ++l +  +++v+V+   +++   a+ +l+
     KIR66142.1 201 ASRLRPERVIGSGPRLGQ--RVPVLVDThvTGVLEHADGALS 240
                    566777888888888888..9999999655665555555555 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   1.7e-05     0.077       1      95 [.       7      91 ..       7     118 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.7e-05
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-E CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaCietgvh 95
                     v ++G G +++a ++ la+h  vd  ++vad + ++ +a+aa + g ++      +e   +   +   + + v+nl+ p  ++++   +i++g h
       KIR66142.1  7 VGVVGLGVISRAYLDTLANHPAVD-IVAVADLDASRSAATAAGLPGAEAV----SVERLLD---R--PDVQTVLNLTIPAAHAEISLGAIDAGKH 91
                     679********************7.8899999999977777654443333....3322222...2..2446777777777777777777777776 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.2e-05      0.32       2      38 ..       6      42 ..       5      49 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.2e-05
                EEEEESTSHHHHHHHHHHHHHTTCEEEEEE-TS-HHH CS
     Gp_dh_N  2 kvainGfGRIGrlvlralleekelevvaindltdlet 38
                +v++ G+G I r  l +l++++ +++va+ dl   ++
  KIR66142.1  6 RVGVVGLGVISRAYLDTLANHPAVDIVAVADLDASRS 42
                89****************************9755444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2449.65
//
Query:       KIR66143.1  [L=394]
Description: monooxygenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-16   59.8   0.5    1.1e-15   57.8   0.5    1.9  1  FAD_binding_3  FAD binding domain
    2.3e-09   36.9   0.3    0.00046   19.5   0.2    2.3  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.4e-07   31.4   6.9    9.9e-06   25.4   1.8    2.2  2  DAO            FAD dependent oxidoreductase
    2.2e-06   27.8   0.8    7.1e-06   26.2   0.2    2.2  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    4.9e-05   22.8   0.1        0.1   11.9   0.0    2.2  2  Amino_oxidase  Flavin containing amine oxidoreductase
    7.4e-05   22.1   0.0      0.059   12.6   0.0    2.1  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0011   18.1   3.3     0.0016   17.6   0.4    2.2  2  FAD_binding_2  FAD binding domain
     0.0065   15.6   0.4      0.027   13.5   0.4    1.9  1  Lycopene_cycl  Lycopene cyclase protein
  ------ inclusion threshold ------
      0.024   13.4   0.2       0.35    9.5   0.1    2.0  2  HI0933_like    HI0933-like protein
      0.045   13.8   0.7       0.28   11.2   0.1    2.3  2  NAD_binding_9  FAD-NAD(P)-binding
      0.065   12.5   0.1        0.1   11.8   0.1    1.2  1  Thi4           Thi4 family
       0.15   12.3   0.0       0.33   11.2   0.0    1.5  1  TrkA_N         TrkA-N domain
       0.41    9.9   1.6        0.9    8.8   1.6    1.6  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.5     8e-19   1.1e-15       4     318 ..      13     322 ..      11     335 .. 0.74

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 8e-19
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCC..CEEEEEHHCHHCST CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdt..pkaradlelesspe 97 
                     +IVGaG aGl +a+ L++ G   ++ve+   +   +    l     +  + lGl   + +++    l++++l    +++    ++  + + + ++
     KIR66143.1  13 AVIVGAGIAGLATARRLAQDGWHPLVVERAPARRSGGYLVNLLGAGYDAAERLGLVPALSDRA--LGLFTTVLVRA-DGRpkLTVPSAVAAAALGP 105
                    57****************************99999998888999999***************9..55556655555.3444423333333455666 PP

                    -CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEEEEEE CS
  FAD_binding_3  98 rvtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvldvlfd 193
                    r+ ++   +le++L+e+ ++  +++rf+t + +++qd   v+  + d +t      +a+ lvGaDG++S++r +l     g+++   +++  v+++
     KIR66143.1 106 RTMTVFRGDLENALYEA-VRDHAEIRFGTTIATINQDAGRVKISFSDGTT-----ENADLLVGADGVHSATRTALF----GPDHR--VDLPYVVAA 189
                    666677889*******9.9999******************9999999863.....368**************9997....44433..444444444 PP

                    C-SCCCTTC.......CEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEEEEEE..EEEEEEESS CS
  FAD_binding_3 194 adlsdivep.......lvlilsaesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivgektldveieevsaw..tvaqrvaek 280
                     +l+++ ++        ++ + +   +v ++P ++     y+ ++ ++e ++ + +   + +  +l   v e+  +ve +  sa+  +v+q  a +
     KIR66143.1 190 FPLPQPPAEvpessatTFIGPGRTAAIVNLGPHRSSAFFTYRCADPGRELTRGPVDA-LRAAFGDLAGGVPEAIRHVETDPSSAYfdRVSQVDAPR 284
                    455544444344555233333444455588888883333344444444444444443.34556667777777777778888888733556677889 PP

                    SEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 281 yrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkL 318
                    ++ grv l GDAa +++  +G G  +a+  a +L+ +L
     KIR66143.1 285 WSIGRVALLGDAAWCVTLFAGHGAALALAGADQLGAAL 322
                    ***************************99999999887 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.2   3.4e-07   0.00046       2      31 ..      12      44 ..      11      73 .. 0.83
   2 !   15.3   0.0   6.3e-06    0.0087     174     243 ..     104     172 ..      93     179 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.4e-07
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE...T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...x RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve...l 31
                 + v++G+G+AGla+a++laq g   ++ve   +
   KIR66143.1 12 RAVIVGAGIAGLATARRLAQDGWHPLVVErapA 44
                 679********************9999975441 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 6.3e-06
                  SSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 174 rdrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstel 243
                  ++r +  +  +l++al ea++++  e+++gt++ +i+++  +++   +dg++++adl+v a Gv   t++
   KIR66143.1 104 GPRTMTVFRGDLENALYEAVRDH-AEIRFGTTIATINQDAGRVKISFSDGTTENADLLVGADGVHSATRT 172
                  57788888889999999999997.799999**********************************988876 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   1.8   7.2e-09   9.9e-06       2      49 ..      13      60 ..      12      84 .. 0.77
   2 !    8.9   0.3   0.00071      0.98     134     219 ..     101     184 ..      75     316 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 7.2e-09
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSS CS
         DAO  2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglr 49
                 vi+G+Gi+Gl+tA+ La+ g   +++e++  +++ + g    ll +g++
  KIR66143.1 13 AVIVGAGIAGLATARRLAQDGwhPLVVERA--PARRSGGYLVNLLGAGYD 60
                69***************************9..554666666666666664 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00071
                 EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECTEEEEEEEEEEE--GGGHH.HHHTT.CTTTSEE.EE CS
         DAO 134 alfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve.rttpgendaadavVnaaGawsd.llgll.keldlpi.sp 219
                 a + p t +v    l +al++a++++ +ei++gt++  ++++ g+v+  + +   g+++ ad +V a G++s   ++l+ +  d+++  p
  KIR66143.1 101 AALGPRTMTVFRGDLENALYEAVRDH-AEIRFGTTIATINQDAGRVKISFsD---GTTENADLLVGADGVHSAtRTALFgP--DHRVdLP 184
                 55555666666666667777777655.************7665775555463...44434799********9764433332..2333244 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.2   5.2e-09   7.1e-06       1      29 [.      15      43 ..      15      51 .. 0.89
   2 ?   -3.1   0.0       6.9   9.5e+03      13      22 ..     320     329 ..     318     329 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 5.2e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   IvGaG++Gl++A++La++g + l++e+++
     KIR66143.1 15 IVGAGIAGLATARRLAQDGWHPLVVERAP 43
                   9*************************975 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.9
                    HHHHCCTEEE CS
  NAD_binding_8  13 ylLakagfdv 22 
                    ++L+++g+dv
     KIR66143.1 320 AALRRHGHDV 329
                    789****998 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00066      0.91       1      22 [.      20      41 ..      20      46 .. 0.93
   2 !   11.9   0.0   7.4e-05       0.1     212     258 ..     115     162 ..     106     190 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00066
                   HHHHHHHHHHHHTTEEEEEEES CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlEa 22
                   +aGLa+Ar+L++ G   +v+E 
     KIR66143.1 20 IAGLATARRLAQDGWHPLVVER 41
                   8*************99999996 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 7.4e-05
                    HHHHHHH.TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE CS
  Amino_oxidase 212 lpealae.elrgldirlntrVkeikregdgvtvtledgevveaDaVvv 258
                    l +al e  +   +ir++t    i+++++ v++ ++dg++ +aD  v 
     KIR66143.1 115 LENALYEaVRDHAEIRFGTTIATINQDAGRVKISFSDGTTENADLLVG 162
                    6677777777799*******************************9875 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   4.3e-05     0.059       1      30 [.      14      42 ..      14      47 .. 0.91
   2 !    7.5   0.0    0.0016       2.1     211     270 ..     112     169 ..      86     176 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.3e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 +I+GaG aGla+a  l + g  + l++E++
   KIR66143.1 14 VIVGAGIAGLATARRLAQDGW-HPLVVERA 42
                 7********************.689***97 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0016
  Pyr_redox_3 211 kpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpd 270
                  + d en l e+v+  + ++ f +++  i+++  ++k++++dg++ e+ d  v a G ++ 
   KIR66143.1 112 RGDLENALYEAVRD-HAEIRFGTTIATINQDAGRVKISFSDGTT-ENADLLVGADGVHSA 169
                  67889999999985.489***********************965.666777777787765 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.4   1.1e-06    0.0016       2      36 ..      13      47 ..      12      56 .. 0.93
   2 ?    0.6   0.1      0.17   2.3e+02     197     276 ..     310     382 ..     294     391 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36
                   ++++G+G+AGLa A ++a+ G   +vve ++++++
     KIR66143.1 13 AVIVGAGIAGLATARRLAQDGWHPLVVERAPARRS 47
                   69***************************999876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.17
                    E-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTBB--THHHHTT-E CS
  FAD_binding_2 197 latgGfgrallkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGgi 276
                    la  G+  +l   l++++++  +  a++ tG   +++ r+++a +     ++q++P+s + ++ +    i +a+  +G  
     KIR66143.1 310 LALAGAD-QLGAALRRHGHDVPSALAEWETGLRPEIVKRQALARR----GMYQYAPPSRFHVWMNDVT-I-RAITLPGIH 382
                    5555666.4666778888999999999999999999999999844....5999999999999988877.3.666666655 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.4   1.9e-05     0.027       3     145 ..      14     170 ..      13     181 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.9e-05
  Lycopene_cycl   3 vviGaGpAglslAarlteakpglkvvlieaspsllfpnnyvWsdefedlga.........leecvehsWsgtivylddgkkillg.........ra 80 
                    v++GaG Agl+ A rl  a+ g + +++e +p   +++ y     +++ +a         l +        + v++d+  k ++           +
     KIR66143.1  14 VIVGAGIAGLATARRL--AQDGWHPLVVERAPAR-RSGGYLVNLLGAGYDAaerlglvpaLSDRALGLFTTVLVRADGRPKLTVPsavaaaalgPR 106
                    8***************..9999999999999988.8888866666766666667776666555555567777777777766665566666665445 PP

  Lycopene_cycl  81 Ygrvsskrlkeellerlvengvklleakvesveeeeageslvvleggrkirarlvvdarglaslk 145
                      +v + +l++ l e + +++ ++   +++ ++++   ++ +  ++g + +a l v a g+ s++
     KIR66143.1 107 TMTVFRGDLENALYEAVRDHAEIRFGTTIATINQDAG-RVKISFSDGTTENADLLVGADGVHSAT 170
                    5678888888888888888888888888888887776.888888898888888888888866655 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00025      0.35       2      33 ..      12      43 ..      11      48 .. 0.91
   2 ?    1.6   0.0     0.064        89     119     170 ..     122     172 ..     115     176 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00025
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 + +++G+G AGl +A ++a+ g + l++e+a+
   KIR66143.1 12 RAVIVGAGIAGLATARRLAQDGWHPLVVERAP 43
                 579***********************999875 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.064
                  HHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-GGG CS
  HI0933_like 119 lkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSiPkl 170
                  + + + ++r  t++++++++++ +++++ +++++ +ad lv A G  S+ ++
   KIR66143.1 122 AVRDHAEIRFGTTIATINQDAG-RVKISFSDGTTENADLLVGADGVHSATRT 172
                  5567899**********77555.59999999999999999999999998775 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1    0.0002      0.28       1      24 [.      14      35 ..      14      48 .. 0.85
   2 ?    0.1   0.0      0.52   7.2e+02     112     154 ..     124     165 ..     112     167 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
  NAD_binding_9  1 aivGaGprGlavlerLlarakkks 24
                   +ivGaG++Gla+++rL++     +
     KIR66143.1 14 VIVGAGIAGLATARRLAQDG--WH 35
                   7****************985..44 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.52
  NAD_binding_9 112 pegvtvevhraevvdleeradgqavlladgaslaadaVvLAlG 154
                    +++ ++++  +++  ++++a+++++  +dg++  ad +v A G
     KIR66143.1 124 RDHAEIRF-GTTIATINQDAGRVKISFSDGTTENADLLVGADG 165
                    55555554.67888899999999*************9997765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   7.4e-05       0.1      20      52 ..      13      44 ..       8      56 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.4e-05
                EEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS CS
        Thi4 20 vvivGaGssGLtaayylakkpdlkvailersvs 52
                 vivGaG +GL++a+ la++ + + +++er  +
  KIR66143.1 13 AVIVGAGIAGLATARRLAQD-GWHPLVVERAPA 44
                59*****************9.999999998755 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00024      0.33       2      33 ..      14      45 ..      13      48 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
                EEES-SHHHHHHHHHHHHTTEEEEEEESSHHH CS
      TrkA_N  2 iiiGlGrvGrslaeeLseggkdvvvidkdeer 33
                +i+G+G  G + a++L ++g++ +v+++ ++r
  KIR66143.1 14 VIVGAGIAGLATARRLAQDGWHPLVVERAPAR 45
                8*****************8888*****99876 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.6   0.00065       0.9      24      49 ..       6      31 ..       2     102 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00065
                 TCB---EEEEESTSHHHHHHHHHHHH CS
  AlaDh_PNT_C 24 pgvepakvlviGgGvaGlqAiatakg 49
                 +gv+  + +++G+G+aGl+ ++  ++
   KIR66143.1  6 SGVRMKRAVIVGAGIAGLATARRLAQ 31
                 588899************99886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 2460.21
//
Query:       KIR66144.1  [L=198]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-08   31.7   0.5    2.3e-07   30.5   0.5    1.7  1  TetR_N     Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
       0.21   11.9  11.1       0.06   13.7   7.6    1.8  2  TetR_C_11  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.5   2.6e-11   2.3e-07       2      39 ..      15      52 ..      14      58 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 2.6e-11
                HHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSS CS
      TetR_N  2 ldaArelfaerGydattvreIAkrAGvskgalYryFps 39
                 +aA++++a  G  ++t r++ ++AGv+ g+l+ +F++
  KIR66144.1 15 FAAAERVIAASGPGELTSRAVTREAGVATGLLFAHFAN 52
                68**********************************98 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.61   5.4e+03      66      76 ..      23      33 ..       8      50 .. 0.52
   2 ?   13.7   7.6   6.6e-06      0.06      39     111 ..     115     187 ..      97     189 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.61
   TetR_C_11 66 rAvarGelrad 76
                 A   Gel   
  KIR66144.1 23 AASGPGELTSR 33
                34444444443 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 6.6e-06
   TetR_C_11  39 qrdpelaealrerlleprraalravlrrAvarGelradadvelvldlllgpllyrllltge.plddafaerlvd 111
                 +r +++  a  +  l+p ++a+ + l+  ++ G ++a+ad+e++  +++g+l++ +l++g+ p+ + +++r+++
  KIR66144.1 115 ARTEAVLGAGTA-ALRPLHRAVVEYLAAERRLGRIPAGADAEALTLAVVGVLHHVALTDGTdPAAESRIRRAMT 187
                 334444444444.599999999999*99999*****************************98899999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1432.78
//
Query:       KIR66145.1  [L=249]
Description: SAM-dependent methyltransferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-12   47.8   0.2    3.2e-12   47.0   0.2    1.4  1  Methyltransf_25  Methyltransferase domain
      5e-12   45.9   0.0    6.5e-12   45.5   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
      2e-09   38.1   0.1    3.7e-09   37.2   0.1    1.4  1  Methyltransf_12  Methyltransferase domain
    5.7e-09   36.0   0.0      7e-09   35.7   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      1e-08   34.9   0.0    1.4e-08   34.4   0.0    1.2  1  MTS              Methyltransferase small domain
    1.6e-07   31.9   0.1    2.7e-07   31.2   0.1    1.4  1  Methyltransf_11  Methyltransferase domain
    0.00015   22.7   1.1    0.00028   21.8   1.1    1.5  1  Methyltransf_24  Methyltransferase domain
     0.0026   17.1   0.0     0.0037   16.6   0.0    1.1  1  CMAS             Mycolic acid cyclopropane synthetase
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.015   14.9   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
      0.014   15.3   0.0      0.021   14.8   0.0    1.1  1  Methyltransf_18  Methyltransferase domain
      0.015   14.6   0.0      0.021   14.2   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.058   12.8   0.0      0.082   12.3   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.2   2.2e-15   3.2e-12       1      97 []      40     135 ..      40     135 .. 0.90

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 2.2e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      vLdlGcG+  ++l+++++ ++++  gvD+s+ +le+a+  ae++gl  ++++++ da+++  +dg +Dlv+++g+ h +     + +l+ + r+
       KIR66145.1  40 VLDLGCGEAAWALQALAHHPDGHADGVDVSAYALERAAGAAEARGLadRLTLHRRDARTYV-PDGDYDLVLCVGSTHAFG--GFDGTLELAGRH 130
                      9***********999988789************************************9984.899*******99999988..455778888888 PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      ++ gG
       KIR66145.1 131 VNAGG 135
                      87777 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   4.4e-15   6.5e-12       4     111 ..      37     141 ..      34     182 .. 0.93

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 4.4e-15
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdiee.leklledekfDlilsnevlnaladpdkile 95 
                      + rvlDlGCG+ + ++++     p+++  G+D s+ a+e+A   a+  gl  ++++++ d+ +  +    d  +Dl+l+ +  +a+   d +le
       KIR66145.1  37 TARVLDLGCGEAAWALQAL-AHHPDGHADGVDVSAYALERAAGAAEARGLAdRLTLHRRDARTyVP----DGDYDLVLCVGSTHAFGGFDGTLE 125
                      579*************999.7899**************************99***********888....799********************* PP

  Methyltransf_31  96 eiervlkpggillied 111
                       + r ++ gg+ll+ +
       KIR66145.1 126 LAGRHVNAGGVLLVGE 141
                      ************9976 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.1   2.5e-12   3.7e-09       1      99 []      41     137 ..      41     137 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 2.5e-12
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++GcG ++ +   l+++pd +  gvD+s+ a+e+a+    +r+   +++++l  +d+    + + +Dlv++ +  h++   + +l+ + ++++
       KIR66145.1  41 LDLGCGEAAWALQALAHHPDGHADGVDVSAYALERAAGAAEARGL--ADRLTLHRRDARTYVPDGDYDLVLCVGSTHAFGGFDGTLELAGRHVN 132
                      8********************************999999999887..779999999999999999***************************** PP

  Methyltransf_12  95 pgGrl 99 
                       gG+l
       KIR66145.1 133 AGGVL 137
                      ***87 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   4.7e-12     7e-09      13     117 ..      25     139 ..      17     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 4.7e-12
  Methyltransf_23  13 lerllpk..lraggrvLdiGcGtGillevl.rengf.svtgvDlspeaveiae............kakkaqkdqfdeqeaaepqgkfdlIvlre 90 
                      ++rll +  +++ +rvLd+GcG+  ++  + + ++  + +gvD s  a e+a+            + +             +p+g +dl+ +  
       KIR66145.1  25 VNRLLRRagRQPTARVLDLGCGEAAWALQAlAHHPDgHADGVDVSAYALERAAgaaeargladrlTLHRRDA------RTYVPDGDYDLVLCVG 112
                      6667755558999***********88665526666699*************998887666654432222222......334699********** PP

  Methyltransf_23  91 vlehvpdppellrqiatllkpgGylll 117
                      +++ +  +  +l  ++++++ gG+ll+
       KIR66145.1 113 STHAFGGFDGTLELAGRHVNAGGVLLV 139
                      *************************98 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   9.6e-12   1.4e-08      30     103 ..      35     110 ..      25     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 9.6e-12
                 CTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS-EEEEEE CS
         MTS  30 elsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeveekkfdlivs 103
                 + + +vlDlGcG  + ++++++++p+ + + vdv+a+Ale a   +ea +l+  ++++ +d+   v+++++dl+++
  KIR66145.1  35 QPTARVLDLGCGEAAWALQALAHHPDGHADGVDVSAYALERAAGAAEARGLAdrLTLHRRDARTYVPDGDYDLVLC 110
                 46778**********************************************999********************98 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.1   1.8e-10   2.7e-07       1      95 [.      41     138 ..      41     139 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.8e-10
                      EEET-T.TSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcG.tGrlaealakrg.arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkp 90 
                      Ld+GcG +   ++ala++  ++  gvD+s+++l++a  +a+ +gl  ++++++ da++  ++d+ +Dlv++  + h +   + +l+ + R +  
       KIR66145.1  41 LDLGCGeAAWALQALAHHPdGHADGVDVSAYALERAAGAAEARGLadRLTLHRRDART-YVPDGDYDLVLCVGSTHAFGGFDGTLELAGRHVNA 133
                      8*****44455556665559**********************99999999******97.79*****************99************** PP

                      EEEEE CS
  Methyltransf_11  91 gGllv 95 
                      gG+l+
       KIR66145.1 134 GGVLL 138
                      **997 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   1.1   1.9e-07   0.00028       3     103 ..      43     139 ..      41     141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.9e-07
  Methyltransf_24   3 iGvysGvstlwllralrrngagrlvavdhdpgaeeaaalare.aglddrvrlikadseealaslaagsiDllfiDg.ghaaeavledleallpr 94 
                      +G  +G  ++w l+al ++ +g+   vd  + a e aa a+e  gl+dr++l++ d++ ++++   g++Dl+++ g  ha       le++ ++
       KIR66145.1  43 LG--CGE-AAWALQALAHHPDGHADGVDVSAYALERAAGAAEaRGLADRLTLHRRDARTYVPD---GDYDLVLCVGsTHAFGGFDGTLELAGRH 130
                      67..777.89*******************998444444444459****************886...55**98887747888999999******* PP

  Methyltransf_24  95 lapggvvlf 103
                      ++ ggv+l+
       KIR66145.1 131 VNAGGVLLV 139
                      ******986 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.5e-06    0.0037      52     163 ..      26     138 ..      23     145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.5e-06
                 HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-.--.--SEEEEES-GGGTSGGGHHH CS
        CMAS  52 dlileklelkpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakkrvdeldlerkvevklldyedl.de.kvdrvvsvgafehvgkenydt 147
                 +++l++++ +p  ++Ld+GcG  + + +a +++ d +  g+ +S+   ++a  + ++++l+++ +++  d +   ++  +d v  vg + ++g   +d 
  KIR66145.1  26 NRLLRRAGRQPTARVLDLGCGEAAWALQALAHHpDGHADGVDVSAYALERAAGAAEARGLADRLTLHRRDARTYvPDgDYDLVLCVGSTHAFGG--FDG 122
                 678889999**************9999997765599********************************9998862336*************994..677 PP

                 HHHHHHHHS-TT-EEE CS
        CMAS 148 ffkklkkllkedGlll 163
                   + + + ++++G+ll
  KIR66145.1 123 TLELAGRHVNAGGVLL 138
                 7777777777777776 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   9.8e-06     0.015      12      53 ..      35      77 ..      27     116 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
        MetW 12 kpgsrvldlGcGdGe.llellkeekqvdgrGleldeegvaecv 53
                +p +rvldlGcG+    l+ l+++ + ++ G+++++ ++ ++ 
  KIR66145.1 35 QPTARVLDLGCGEAAwALQALAHHPDGHADGVDVSAYALERAA 77
                5789*********87369***************9998776543 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.4e-05     0.021      14      90 ..      36     112 ..      26     115 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.4e-05
  Methyltransf_18  14 kgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklkeeevdtvviaG 90 
                      +++rv+D G+  +  ++ ++ ++   ++  +D+++ +le+a   +e  gl d+++++  d  + + ++++d v++ G
       KIR66145.1  36 PTARVLDLGCGEAAWALQALAHHPDGHADGVDVSAYALERAAGAAEARGLADRLTLHRRDARTYVPDGDYDLVLCVG 112
                      4689******************************************************9999999888899888776 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.4e-05     0.021      41     151 ..      30     139 ..      23     149 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
                      HH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHH CS
  Ubie_methyltran  41 klvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklk 134
                      ++ + ++ a+vlD+ +G + +a++ + + +  g+ +++D+++  L+ +   ++ +g  +   l+    +    d+ +D+v        +   + 
       KIR66145.1  30 RRAGRQPTARVLDLGCGEAAWALQALAH-HPDGHADGVDVSAYALERAAGAAEARGLADRLTLHRRDARTYVPDGDYDLVLCVGSTHAFGGFDG 122
                      4566777889************998766.6899***********************99877788888888899999999877777888888888 PP

                      HHHHHHHHEEEEEEEEE CS
  Ubie_methyltran 135 aLkeayrvlkpGGrlvv 151
                      +L+ a r + +GG l+v
       KIR66145.1 123 TLELAGRHVNAGGVLLV 139
                      88888888888888877 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.5e-05     0.082     160     232 ..      35     110 ..      27     111 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.5e-05
        PrmA 160 kegeevlDvGtGSGiLaiaaakLg.akkvvavDiDevAvkvakeNaelNkveaklevalseellk...eekadviva 232
                 +++++vlD+G+G +  a+ a+      ++ +vD+   A++ a+  ae  +++++l+++  +   +   ++ +d++++
  KIR66145.1  35 QPTARVLDLGCGEAAWALQALAHHpDGHADGVDVSAYALERAAGAAEARGLADRLTLHRRDAR-TyvpDGDYDLVLC 110
                 56789************9887655156899***********************9988743222.1123688888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1848.24
//
Query:       KIR66146.1  [L=225]
Description: XRE family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-26   93.1   0.1    1.8e-26   92.5   0.1    1.3  1  Response_reg  Response regulator receiver domain
    2.9e-21   75.3   0.4    7.7e-21   74.0   0.0    1.9  2  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.1     2e-30   1.8e-26       2     112 .]       2     110 ..       1     110 [. 0.98

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 2e-30
                   EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEEE CS
  Response_reg   2 livdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddfl 98 
                   ++++Dd+ ++e+lr++l  eg  e +++ dg++al++++++ +dl++lD+++pg+dG+++++ +r+e+ ++  ++lta+s+e+d+ ++l++gadd++
    KIR66146.1   2 MLAEDDRRQAEALRRYLAAEGH-EATVVYDGEAALRQARQQPFDLLVLDVMLPGLDGMQVCRILRQES-DVLMLMLTARSSEDDLLRGLDLGADDYM 96 
                   689*******************.*******************************************98.9*************************** PP

                   ESSG-HHHHHHHHH CS
  Response_reg  99 sKpfdpeeLlkale 112
                   +Kpf+p+eL+++++
    KIR66146.1  97 TKPFSPRELVARIR 110
                   **********9985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.88   7.9e+03      50      59 ..     106     115 ..     102     123 .. 0.67
   2 !   74.0   0.0   8.6e-25   7.7e-21       3      77 .]     146     220 ..     144     220 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.88
                  HHHHHHHHHT CS
  Trans_reg_C  50 isrLRkkLed 59 
                  ++r+R  L+ 
   KIR66146.1 106 VARIRTLLRR 115
                  6667766665 PP

  == domain 2  score: 74.0 bits;  conditional E-value: 8.6e-25
                  EEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   3 eveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  +v+ t+ ef++L+++ ++pgrv++r +Lle+  g + ++++rt+dvh+ +LR+k+e +++ p+ + tv+gvGY+l
   KIR66146.1 146 PVDCTAGEFAILAAMTRQPGRVFTRGQLLEHTRGVERESTERTIDVHVMNLRRKIELNPRRPQQLLTVYGVGYKL 220
                  7999*********************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1633.78
//
Query:       KIR66147.1  [L=226]
Description: ABC transporter ATP-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.6e-32  110.7   0.0      1e-31  110.3   0.0    1.2  1  ABC_tran     ABC transporter
    1.2e-05   24.9   0.0      0.034   13.6   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
    7.1e-05   22.8   0.0      0.064   13.1   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00024   20.8   0.1    0.00049   19.8   0.1    1.5  1  AAA_29       P-loop containing region of AAA domain
     0.0012   19.2   1.1     0.0023   18.3   1.0    1.7  1  AAA_16       AAA ATPase domain
     0.0059   16.9   0.2      0.012   15.9   0.2    1.9  1  AAA_22       AAA domain
     0.0087   15.8   1.0      0.096   12.4   1.4    2.1  2  AAA_30       AAA domain
  ------ inclusion threshold ------
      0.015   15.2   0.0      0.024   14.6   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
      0.017   15.0   0.3        4.7    7.1   0.0    2.2  2  MobB         Molybdopterin guanine dinucleotide synthesis pro
      0.026   14.1   0.6      0.079   12.5   0.0    2.0  2  AAA_25       AAA domain
      0.033   14.3   1.5      0.083   13.1   1.5    1.9  1  AAA_33       AAA domain
      0.033   14.7   0.1      0.051   14.1   0.1    1.2  1  AAA_23       AAA domain
       0.12   12.2   0.0       0.19   11.6   0.0    1.2  1  Rad17        Rad17 P-loop domain
       0.14   12.1   0.0       0.28   11.1   0.0    1.5  1  NACHT        NACHT domain
        0.2   11.4   0.2       0.68    9.6   0.1    1.7  2  AAA_24       AAA domain
       0.21   11.2   0.4        1.2    8.7   0.1    2.0  2  cobW         CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.0   8.9e-35     1e-31       2     136 ..      22     169 ..      21     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 110.3 bits;  conditional E-value: 8.9e-35
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHC.EEEE-SS--S-TTSBHHHH..........HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxx.xxxxxxxxxxxxxxxxxxx..........xxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrke.igvlpqepqlfpeltvren..........esdeeie 86 
                 + + l++ ege++aivG++G+GKStLl l+  l +pt+G+i++ g+d+     ++l+ lr + +g+++q+ +l ++lt++en           ++++ +
  KIR66147.1  22 RGICLDIAEGELLAIVGPSGSGKSTLLHLMGTLDRPTSGTIRIAGQDVAAlsdRQLSALRGRwLGFVFQQFHLAEGLTAAENvatgllyagvPRRRRRA 120
                 678899******************************************9998866666665538***************************95566655 PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  al+ l+ ++l++ +v+++p++LSgG++qrva+ara+++ p l+l+DEpt
  KIR66147.1 121 LALDALDRVGLAH-RVGHRPAQLSGGERQRVAIARAIVNGPALVLADEPT 169
                 5566666666333.557889*****************************9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00059      0.66      26      41 ..      33      48 ..      26      56 .. 0.86
   2 !   13.6   0.0     3e-05     0.034     131     205 ..     136     207 ..      87     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00059
                EEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnll 41
                + aivGp GSGKs ll
  KIR66147.1 33 LLAIVGPSGSGKSTLL 48
                679**********987 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3e-05
                 T-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
       SMC_N 131 giskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemleka 205
                 g  + +LSgGe++ va+a       v+  +l+l De   aLD    ++v +ll++ +++ + + vi++++e+ +  
  KIR66147.1 136 GHRPAQLSGGERQRVAIAR----AIVNGPALVLADEPTGALDTGTGHAVLRLLRRLNEEgTTIAVITHDNEIAASL 207
                 555669*******998874....3578889************************9988868888*****9987765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   5.7e-05     0.064       2      20 ..      34      52 ..      33      79 .. 0.81
   2 !    8.0   0.0     0.002       2.2     235     301 ..     140     203 ..     114     205 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.7e-05
      AAA_21  2 nvliGpNgsGKSnLLdald 20
                 +++Gp gsGKS+LL ++ 
  KIR66147.1 34 LAIVGPSGSGKSTLLHLMG 52
                58*************8775 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.002
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpll 301
                 ++lS G ++  a++ a+   +   +l+l DEp   L+    + +l+ll++l+++g+ + + TH++++
  KIR66147.1 140 AQLSGGERQRVAIARAIVNGP---ALVLADEPTGALDTGTGHAVLRLLRRLNEEGTTIAVITHDNEI 203
                 566777776656666666544...99999*******************999999**********987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   4.3e-07   0.00049      17      39 ..      26      48 ..      19      61 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.3e-07
      AAA_29 17 ieidlkgatlltGpsGsGKSTll 39
                ++i + +   ++GpsGsGKSTll
  KIR66147.1 26 LDIAEGELLAIVGPSGSGKSTLL 48
                5566455899************9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   1.0   2.1e-06    0.0023      21      63 ..      30      69 ..      18     201 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.1e-06
      AAA_16 21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                +g  el+ ++G+sG+GKs+l+      l +    ++r   ++ 
  KIR66147.1 30 EG--ELLAIVGPSGSGKSTLLHLMG-TLDRPTSGTIRIAGQDV 69
                34..89***************6666.67777444444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   1.1e-05     0.012       6      27 ..      32      53 ..      28     203 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.1e-05
      AAA_22  6 gilvvtGesGtGKTtllrrlle 27
                 +l+++G+sG+GK+tll  +  
  KIR66147.1 32 ELLAIVGPSGSGKSTLLHLMGT 53
                6799************987765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   1.4   8.5e-05     0.096      19      53 ..      32      66 ..      22     205 .. 0.57
   2 ?    2.2   0.1      0.11   1.2e+02       5      68 ..     147     213 ..     141     222 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.5e-05
      AAA_30 19 rvavltGpAGtGKttalkalreaweaaggrviglA 53
                 + +++Gp G+GK+t+l  +  + +   g++ ++ 
  KIR66147.1 32 ELLAIVGPSGSGKSTLLHLMGTLDRPTSGTIRIAG 66
                3889*************999998888854444332 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.11
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKttalkal...reaweaaggrviglAptgkaAkvLaeelgi 68 
                  Q+ a+++++ +g  ++++  p G+  t +  a+    + ++++g +++++++ ++ A+ L + ++i
  KIR66147.1 147 RQRVAIARAIVNGPALVLADEPTGALDTGTGHAVlrlLRRLNEEGTTIAVITHDNEIAASLPRRVEI 213
                 5666666666666667776666665444433333000333444678888888888888888776665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.1e-05     0.024      98     119 ..      30      51 ..      15      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-05
                  TTSEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinal 119
                  ++++ ++vG+SG GKStL+  +
   KIR66147.1  30 EGELLAIVGPSGSGKSTLLHLM 51 
                  558999************9765 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0042       4.7       2      17 ..      34      49 ..      33      65 .. 0.87
   2 ?    6.0   0.0    0.0094        11       9      38 ..     173     202 ..     169     207 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0042
        MobB  2 lgivgksgsGKTtLle 17
                l+ivg sgsGK tLl+
  KIR66147.1 34 LAIVGPSGSGKSTLLH 49
                89************96 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0094
        MobB   9 gsGKTtLleklipelkarglrvgtiKhahh 38 
                 ++G    + +l++ l+++g ++++i h+++
  KIR66147.1 173 DTGTGHAVLRLLRRLNEEGTTIAVITHDNE 202
                 667777788******************975 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     7e-05     0.079      30      50 ..      28      48 ..      10      53 .. 0.88
   2 ?   -0.9   0.1      0.91     1e+03      57      90 ..     104     135 ..      98     201 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7e-05
      AAA_25 30 lpagelallaGapgtGKttla 50
                +++gel +++G++g+GK+tl+
  KIR66147.1 28 IAEGELLAIVGPSGSGKSTLL 48
                579****************98 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.91
      AAA_25  57 vatGkpwlgpvapeqgkVlyvsaEdsedelrrRl 90 
                 vatG   +g v+ ++++ l ++a d+  +l+ R+
  KIR66147.1 104 VATGLLYAG-VPRRRRRALALDALDRV-GLAHRV 135
                 666776666.44466666666665555.555554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.5   7.4e-05     0.083       1      19 [.      33      51 ..      33     225 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.4e-05
      AAA_33  1 lvllvGlpGsGKstlaerl 19
                l+ +vG++GsGKstl++ +
  KIR66147.1 33 LLAIVGPSGSGKSTLLHLM 51
                5678***********9854 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   4.6e-05     0.051      21      36 ..      33      48 ..      23      52 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.6e-05
      AAA_23 21 ltlItGpNGaGKTTil 36
                l +I+Gp G+GK+T+l
  KIR66147.1 33 LLAIVGPSGSGKSTLL 48
                779************9 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00017      0.19      35      65 ..      21      51 ..      18      57 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
       Rad17 35 lkadvLesrkkriLLisGPsGCgkstvvkvL 65
                l+   L+ ++ ++L i GPsG gkst ++ +
  KIR66147.1 21 LRGICLDIAEGELLAIVGPSGSGKSTLLHLM 51
                666678888889**************99765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00025      0.28       2      18 ..      33      49 ..      32      59 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
                CEEEEC-TTTCHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlq 18
                l+++ G++GsGK+tLl+
  KIR66147.1 33 LLAIVGPSGSGKSTLLH 49
                689************97 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00061      0.68       5      22 ..      34      51 ..      31      61 .. 0.85
   2 ?   -1.0   0.0       1.1   1.3e+03     110     133 ..     179     202 ..     175     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00061
      AAA_24  5 iliyGpsgiGKTtlakel 22
                ++i+Gpsg+GK+tl+  +
  KIR66147.1 34 LAIVGPSGSGKSTLLHLM 51
                589***********9877 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
      AAA_24 110 efrrllkklqelrknvifiahekt 133
                  + rll++l+e + ++ +i h  +
  KIR66147.1 179 AVLRLLRRLNEEGTTIAVITHDNE 202
                 57899999999999**99999776 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1    0.0011       1.2       3      18 ..      34      49 ..      32      70 .. 0.86
   2 ?    0.3   0.0      0.39   4.4e+02      15      36 ..     178     201 ..     169     209 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0011
                EEEEESTTCCHHHHHH CS
        cobW  3 tvltGflGsGKTtLln 18
                + ++G+ GsGK+tLl 
  KIR66147.1 34 LAIVGPSGSGKSTLLH 49
                5799**********96 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.39
                 HHHHHHH..CT--SS-EEEEESS- CS
        cobW  15 tLlnhll..enraglklavivNef 36 
                   + +ll   n++g  +avi+ + 
  KIR66147.1 178 HAVLRLLrrLNEEGTTIAVITHDN 201
                 45556666678899******9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 1542.67
//
Query:       KIR66148.1  [L=399]
Description: ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-13   51.8   2.6    1.2e-13   51.8   2.6    1.9  2  MacB_PCD  MacB-like periplasmic core domain
    1.4e-11   44.7   1.5    1.4e-11   44.7   1.5    3.7  4  FtsX      FtsX-like permease family


Domain annotation for each model (and alignments):
>> MacB_PCD  MacB-like periplasmic core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   2.6   1.4e-17   1.2e-13       2     190 ..      28     240 ..      27     245 .. 0.69
   2 ?   -3.2   1.5         1     9e+03       7      20 ..     275     288 ..     272     301 .. 0.75

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 1.4e-17
    MacB_PCD   2 lltvLGiaiGvaaviaivslgeglqasvlsqisdlg.nlvtvtpgk..gsgeslsdpdvealrrevp.veavapvv.....tvrgggsg...eeevtvv 88 
                 +++ LGiaiG+a  ++++++ +++qa++l+++s+lg n ++v+ ++  +s+++l+++ v a+ ++++ v+ +++v      ++r+++++   + + tv 
  KIR66148.1  28 AFSALGIAIGIATTVLVTGVPAASQAALLRELSALGtNSLQVMAQPntDSPPQLPEESV-AMVQRIGpVTVASAVAnthalVRRNDRTDardGSGLTVL 125
                 6789*****************************99714456655556677777888878.543333344433333233574223333223332235566 PP

    MacB_PCD  89 gvdpdyfkvfglklaeGrffteadlrggpnvvvigeelaerlf.....pvGdtirl.....kpftVvGvledppgsgsalg.ddavylplttlqrrs.. 174
                 ++  d++++ + ++ +Gr++++  ++++ + vv+g+ +a+rl      + G    +     + ftVvG+l ++p s    + d +v++ +++++++   
  KIR66148.1 126 AARLDLPRAINATVRSGRWLDP--VTERFPTVVLGSVAATRLGfadlpATGGPAPMviigdRWFTVVGILAATPLSP---DiDRSVLVGWEAARSQLrf 219
                 6555788876666788****77..5666778**********8899998677766555678788******96654323...45899***98887433366 PP

    MacB_PCD 175 ......itvrlkdgadleaaaa 190
                       i+v+ +++a +e+++a
  KIR66148.1 220 dghptvIYVQCRESA-IETVRA 240
                 788888**9999865.466655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1
    MacB_PCD   7 GiaiGvaaviaivs 20 
                 ++ +G aav ++v+
  KIR66148.1 275 ALLLGLAAVALLVG 288
                 78899999998883 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.034     3e+02      10      49 ..      18      57 ..      16     100 .. 0.70
   2 ?   -2.0   0.0      0.56     5e+03      37      47 ..     188     198 ..     149     226 .. 0.66
   3 ?   -1.6   1.6      0.44   3.9e+03      28      50 ..     280     289 ..     268     301 .. 0.47
   4 !   44.7   1.5   1.5e-15   1.4e-11       1      96 []     304     392 ..     304     392 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.034
        FtsX 10 lGmkkkqvlllllteillitlvalviGlglgllaaqllsd 49
                lG ++++++  +   +++i++  +v+ +g+ ++   +l  
  KIR66148.1 18 LGIRTRRMRAAFSALGIAIGIATTVLVTGVPAASQAALLR 57
                6777777777777777777777777777774444444443 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.56
        FtsX  37 lglgllaaqll 47 
                 +++g+laa +l
  KIR66148.1 188 TVVGILAATPL 198
                 34455555544 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.44
        FtsX  28 itlvalviGlglgllaaqllsdv 50 
                 +++val++G             +
  KIR66148.1 280 LAAVALLVG-------------G 289
                 233333333.............2 PP

  == domain 4  score: 44.7 bits;  conditional E-value: 1.5e-15
        FtsX   1 kreigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiskilkkep 96 
                 + eig++ralG++++q++ ++lte++++++++ v+G+++gl+a+ + ++v       +  ++ ++l + l++++ ++++ ++ag+++++++++ +p
  KIR66148.1 304 RTEIGLRRALGAHRGQIRAQFLTESAALAALGGVAGTLVGLAATAA-YAV------HQGWPVVVPLPATLAGLGGAVVVGVVAGVYPSIRAARLTP 392
                 57**********************************9999999887.222......26678999***************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2958.37
//
Query:       KIR66149.1  [L=438]
Description: allantoicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-25   89.3   0.0    1.1e-12   48.0   0.0    2.0  2  Amidohydro_1  Amidohydrolase family
    9.1e-13   48.5   4.0    1.2e-08   34.9   0.1    3.0  3  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   4.2e-14   3.8e-10       2      86 ..      53     130 ..      52     192 .. 0.81
   2 !   48.0   0.0   1.2e-16   1.1e-12     171     344 .]     224     423 ..     196     423 .. 0.76

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 4.2e-14
                   EEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH......HHHHHHHHHHT.SSSEEEEEEESSEG CS
  Amidohydro_1   2 vlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst......giealleaaee.lplglrilggkvsl 86 
                   +lPGl+D+HvH++             +p++t +e+++s++++a  +G+tt  dm+ + ++      ++e  + aa+  + ++++++gg v++
    KIR66149.1  53 LLPGLVDTHVHVN-------------EPGRTEWEGFASATRAAAAGGVTTLVDMPLNSVPptvtvaALETKRAAARGrCHVDVGFWGG-VVP 130
                   79**********8.............*******************************999999997777777788889889*****99.333 PP

  == domain 2  score: 48.0 bits;  conditional E-value: 1.2e-16
                   EEETTTTSTCCHHTTTHCCEEEHCTCEEE....HHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECT........TSSCCG CS
  Amidohydro_1 171 ehgthlevaeslglldeiklilahgvhlt....pteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvkvglgtDga........asgnsl 255
                    +  h+  + s+g+l e+ +++a+gv lt    p+ ++l +e++ +      +++  + r++ ++l+ al +G+   +++D+         a  +++
    KIR66149.1 224 GSRVHVLHLSSVGALPELVAARADGVRLTvetcPHYLALAAEQVPDGATEFKCCPPIRDRDNQDRLWAALADGTVDCVVSDHSpclpelkrA--DTG 318
                   33334444456777777799999999999533333555555554333333556666668999999****************88899999663..333 PP

                   GHHHH..HHHHHHHHHHCCTT.TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC......CT........CGGGTTTCTSEEEE CS
  Amidohydro_1 256 nllee..lrlalklqrgllye.deegglslkealrmaTingAkalglddkvGsievGkdADlvvvdl......di........laafvglkkdgnvk 335
                   ++     ++  + l+ ++ ++   + g  l++++r++ +++A+ +gl+  +G+i+vG dADlv++d        +         ++++g+   g v+
    KIR66149.1 319 DFAAAwgGIASVQLSLPVVWTqARRRGHGLSDVIRWMATGPADLVGLP-GKGRIAVGADADLVAFDAdagfrvEPgllrhrhpVTPYAGQRLTGVVR 414
                   333334488888899999999977999********************7.******************7666551166777777************** PP

                   EEEETTEEE CS
  Amidohydro_1 336 kvivkGklv 344
                    ++++G+ v
    KIR66149.1 415 ATWLRGEPV 423
                   ******865 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.2   4.4e-06     0.039       4      48 ..      47      91 ..      46     107 .. 0.79
   2 ?   -1.3   0.0      0.13   1.2e+03     154     277 ..     205     225 ..     193     297 .. 0.70
   3 !   34.9   0.1   1.3e-12   1.2e-08     406     472 ..     344     423 ..     337     424 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.4e-06
  Amidohydro_3  4 DakGrlvlPGFvDsHtHlaggg.vnlrllrlpdarvtslegvltav 48
                  D+    +lPG+vD H H+ + g  ++ ++ +   r+ ++ gv+t v
    KIR66149.1 47 DLGDVALLPGLVDTHVHVNEPGrTEWEGFASAT-RAAAAGGVTTLV 91
                  899999*************99966665555555.566666666665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.13
  Amidohydro_3 154 areaeaaavaaalaalasyGitsveagggnvsslddleplfeltaeeklplrviikelldaaerlglplspgseeltigavklfadgvlgsrtallt 250
                   ++eae+ ava+++aa+++ G                                                                             
    KIR66149.1 205 PPEAERSAVATVVAAARRTG----------------------------------------------------------------------------- 224
                   55555555555555555554............................................................................. PP

  Amidohydro_3 251 epyftgwpdfedealaelvaaadergl 277
                                              
    KIR66149.1 225 --------------------------S 225
                   ..........................3 PP

  == domain 3  score: 34.9 bits;  conditional E-value: 1.3e-12
  Amidohydro_3 406 eelsleealalyTrgpAkalgledrkGtLevGadADlvvld.adpldvdppelaear.............vrltvvdGrvv 472
                   + + l ++++ + +gpA ++gl+ + G+++vGadADlv +d ++ ++v+p  l++               vr+t+ +G++v
    KIR66149.1 344 RGHGLSDVIRWMATGPADLVGLPGK-GRIAVGADADLVAFDaDAGFRVEPGLLRHRHpvtpyagqrltgvVRATWLRGEPV 423
                   556688999***************8.***************7778999987666666999*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2766.10
//
Query:       KIR66150.1  [L=284]
Description: urate oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-56  190.5   0.0    3.9e-30  104.8   0.0    2.0  2  Uricase   Uricase
     0.0062   16.7   0.7      0.067   13.4   0.1    2.3  2  DUF2379   Protein of unknown function (DUF2379)


Domain annotation for each model (and alignments):
>> Uricase  Uricase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8   0.0   4.4e-34   3.9e-30       2     128 ..       9     124 ..       8     132 .. 0.90
   2 !   83.9   0.0   1.2e-27   1.1e-23       2     131 .]     136     269 ..     135     269 .. 0.93

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 4.4e-34
                 EEEEEEEEEEEE.EETTCBEBECEEEECCEEEEEESSEEECCHHH-STTT---CCHHHHHHHHHHHHH--SSHH.HHHHHHHHHHHC-TTEEEEEEEEE CS
     Uricase   2 kyGkddvrvlkv.rkstgsafhgfvedevttllegkdrilstyfagdnsdvvasdSvkntvYkmakkhgvespe.Falllakhflekyphveevsvslp 98 
                 +yGk++vrv++v r++++   h+  +++v+t+l g d + +t+++gdns+v+++dS+kntvY++a+khgv+spe Fallla+hf+++ p v++++v + 
  KIR66150.1   9 RYGKAQVRVVHVvRDGDR---HTLRDLDVRTALAG-D-LAATHLTGDNSQVLPTDSQKNTVYAFARKHGVASPEaFALLLARHFVHSQPAVRRAEVAVR 102
                 8**************998...**************.*.************************************************************* PP

                 EEEEEEEEECCSSEEEEEECEEEECCCCEE CS
     Uricase  99 nkhwervdlwgtgkphahafvftpsekptg 128
                 +  w+r+          h+f + + e++t+
  KIR66150.1 103 EFGWQRLGQ--------HSFQRGGAETRTA 124
                 ******995........3444444444443 PP

  == domain 2  score: 83.9 bits;  conditional E-value: 1.2e-27
                 EEEEEEEEEEEEEETTCBEBECEEEECCEEEEEESSEEECC............................HHH-STTT---CCHHHHHHHHHHHHH--SS CS
     Uricase   2 kyGkddvrvlkvrkstgsafhgfvedevttllegkdrilst............................yfagdnsdvvasdSvkntvYkmakkhgves 72 
                  +G++d+ +l    +t+s+fhgfv+de+ttl+e++dril+t                             f +       s S ++t+Y+m+++     
  KIR66150.1 136 VSGLTDLVLLN---TTNSEFHGFVRDEYTTLPETTDRILATavdarwrhldadadwdaayrqvrealvaAFVETY-----SRSLQQTLYAMGRR----- 221
                 59*********...*********************************************8888888866555666.....**************..... PP

                 HHHHHHHHHHHHHC-TTEEEEEEEEEEEEEEEEEE.CCSSEEEEEECEEEECCCCEEEEE CS
     Uricase  73 peFalllakhflekyphveevsvslpnkhwervdl.wgtgkphahafvftpsekptglie 131
                           +le+ p+v e+++slpn+h+++vdl  +     + + vf  +++p+g ie
  KIR66150.1 222 ----------VLEARPEVAEIKLSLPNRHHIPVDLsPF--GLDNPNAVFVATDQPYGVIE 269
                 ..........*************************999..5789999**********985 PP

>> DUF2379  Protein of unknown function (DUF2379)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.05   4.5e+02      40      69 ..      28      57 ..      20      71 .. 0.79
   2 !   13.4   0.1   7.5e-06     0.067      67     120 .]     163     218 ..     146     218 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.05
     DUF2379 40 aiseadaeeaLateesAlaLlreiarRire 69
                ++++ d+ +aLa + +A++L  + ++ +  
  KIR66150.1 28 TLRDLDVRTALAGDLAATHLTGDNSQVLPT 57
                5778899**********9998887766555 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 7.5e-06
     DUF2379  67 iregskrLv.dallrmlrlrda.gDldgArqelrevLavEvVPlYRelaeeqLeel 120
                 + e ++r+  +a+   +r+ da  D+d+A +++re L    V +Y ++ +++L ++
  KIR66150.1 163 LPETTDRILaTAVDARWRHLDAdADWDAAYRQVREALVAAFVETYSRSLQQTLYAM 218
                 556667755155555567776527************************99999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2198.91
//
Query:       KIR66151.1  [L=117]
Description: hypothetical protein TK50_13150 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-30  105.0   0.0    3.8e-30  104.8   0.0    1.0  1  Transthyretin  HIUase/Transthyretin family


Domain annotation for each model (and alignments):
>> Transthyretin  HIUase/Transthyretin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8   0.0   2.1e-34   3.8e-30       1     110 []      12     116 ..      12     116 .. 0.97

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 2.1e-34
                    EEEEEEETTTTEE-TS-EEEEEEECTTSSEEEEEEEEE--TTSCESSSSEEGCGB-SEEEEEEEEHHHHHHHTTS..SESCEEEEEEES.TTSEEE CS
  Transthyretin   1 itthvLdttaGkpaagvevelekleeseeeaellaesttdadGrvkellaekeeleagtyklrfeteeYfekegtesffpevevvfevk.eeehyh 95 
                    ++thvLdt+ G pa g+ v+l +l+ ++  ++++a ++tdadGr++++++ +++ + g+y+l+f  + ++     + ffpev ++f+v  +++h h
     KIR66151.1  12 LSTHVLDTVVGAPAPGIGVRLDRLDGTR--WRQVAAGRTDADGRLRDWVP-AAQWRVGRYRLVFGLDGHLGP---DPFFPEVVLTFTVGdPTAHLH 101
                    79**********************9987..*******************9.999****************98...78************778**** PP

                    EEEEEETTEEEEE-B CS
  Transthyretin  96 vPlllspfgYstYrG 110
                    +PlllspfgY+tYrG
     KIR66151.1 102 LPLLLSPFGYTTYRG 116
                    **************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       184  (0.0102627); expected 358.6 (0.02)
Passed bias filter:                      159  (0.00886831); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1037.50
//
Query:       KIR66152.1  [L=168]
Description: OHCU decarboxylase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-37  127.1   1.2    9.3e-37  126.9   1.2    1.0  1  OHCU_decarbox  OHCU decarboxylase


Domain annotation for each model (and alignments):
>> OHCU_decarbox  OHCU decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.9   1.2   5.2e-41   9.3e-37       1     154 [.       8     160 ..       8     161 .. 0.98

  Alignments for each domain:
  == domain 1  score: 126.9 bits;  conditional E-value: 5.2e-41
                    HCS-HHHHHHHHCCCSTTHHHHHHHHHCGS-SSHHHHHHHHHHHCCCS-HHHHHHHHCTS--TTSCCCHHTHCHHHHHHHCCCTTTTCHHHHHHHH CS
  OHCU_decarbox   1 nalseeeltavldtlfepspwlaelalarpfssyeaLiaavaealealseeelleilsaHPrLGekaakkkklsalsrkEqaglglaaseeeleeL 96 
                    nal ++++ + l +++   +w++e+a+ rp+ +++aL+a++++a ++l++ e+ ++l+aHPr+G++ a ++++  +sr+Eq+gl  aas+ +++++
     KIR66152.1   8 NALAPQRAEDDLLACCAVPRWAREVAAGRPYPDLAALLATAQAASARLTWPEVARALTAHPRIGQRPAGQRREDGWSRAEQSGLD-AASARTRAAI 102
                    6788999999*****************99*************************************99899**************.********** PP

                    HHHHHHHHHHHSS-----GCC--HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHH CS
  OHCU_decarbox  97 aelnaeYeekFGlrfvvfvngrsrkeIlaelerRlendpekElrealqemckIardRl 154
                    ae+n++Ye++FG+ f+v+++grs+ e+la+ ++Rl++d ++E++ +  e++kIa++R+
     KIR66152.1 103 AEANEAYERRFGHLFLVCAAGRSDTELLATARDRLAHDEATEREVVRGELAKIAALRI 160
                    *********************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1416.58
//
Query:       KIR66153.1  [L=369]
Description: XshC-Cox1 family protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-39  134.1   0.3    5.8e-39  133.4   0.3    1.3  1  XdhC_C     XdhC Rossmann domain
    1.2e-32  111.9  16.7    5.6e-22   77.7   3.8    2.9  2  XdhC_CoxI  XdhC and CoxI family
  ------ inclusion threshold ------
       0.16   11.9   0.0        0.3   11.0   0.0    1.3  1  DUF5348    Domain of unknown function (DUF5348)


Domain annotation for each model (and alignments):
>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.4   0.3   9.7e-43   5.8e-39       1     125 []     202     348 ..     202     348 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.4 bits;  conditional E-value: 9.7e-43
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE......................-EEEE--S-HHHHHHHHHHHSSS--SEEEESS- CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefatkerfpeade......................tavvvlthdhklDaealeaalrkkaayigllGS 77 
                 l+++Ga +va++lar++  lg+rvtv+d+r+ fat++rfp+a+e                      tav+vlthd+++D ++l+ al+ +++++g+lGS
  KIR66153.1 202 LIVCGAIDVAAELARVGVVLGYRVTVCDARPVFATARRFPQAREvvvdwphrylaaeaeagrldgrTAVCVLTHDPRFDVPVLRLALDLPLGFVGALGS 300
                 79****************************************99*******************************************77799******* PP

                 HHHHHHHCTTS.--.......TTEESS-S--S---SHHHHHHHHHHHH CS
      XdhC_C  78 rkkaarrlerlraaglseeelarlhaPiGldigaktpeeIAvsilAei 125
                 r++++ rl rlr+ag++e++larl++P+Gld+g++  +e+Avsi+Ae+
  KIR66153.1 301 RRTHHDRLGRLREAGVTEAALARLSSPVGLDVGGRDAAEVAVSIAAEL 348
                 ***********************************************7 PP

>> XdhC_CoxI  XdhC and CoxI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   3.8   9.4e-26   5.6e-22       3      68 .]      13      78 ..      11      78 .. 0.98
   2 !   38.8   5.0   1.3e-13   7.7e-10       1      64 [.     116     175 ..     116     178 .. 0.93

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 9.4e-26
                HCT..EEEEEEEEEECSSSSGTT-EEEEETTS-EEE-SSSSCHHHHHHHHHHHHHHCT--EEEEEE CS
   XdhC_CoxI  3 aagrpvalaTVvdteGsaprplGakmlvrpdgrviGsvgggclEaavideArallaagrtalvryg 68
                a+g +v laTVv+t+ sap p+G++mlv pdg+v+Gsv+ggc+Eaa+ + +r+++++gr+al+r+g
  KIR66153.1 13 ADGDAVGLATVVETWRSAPHPAGTAMLVGPDGAVTGSVSGGCVEAALHESCRQAVRTGRPALLRFG 78
                899*************************************************************97 PP

  == domain 2  score: 38.8 bits;  conditional E-value: 1.3e-13
                 HHHCT..EEEEEEEEEECSSSS.GTT-EEEEETTS-EEE-SSSSCHHHHHHHHHHHHHHCT--EE CS
   XdhC_CoxI   1 alaagrpvalaTVvdteGsapr.plGakmlvrpdgrviGsvgggclEaavideArallaagrtal 64 
                 a++ag +va+ T v+    +p+ +lG++m+  pdg  +Gs+g  +l++a++++ r lla+gr++ 
  KIR66153.1 116 AVRAGTAVAVLTCVQ----GPPgRLGRRMVAGPDG-HHGSLGDPRLDEAALAAGRRLLAEGRSGP 175
                 5799***********....8888************.89************************984 PP

>> DUF5348  Domain of unknown function (DUF5348)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     5e-05       0.3      11      35 ..      76     100 ..      71     109 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5e-05
     DUF5348  11 ryvvrfgdgeey..gLhcGeslevlve 35 
                 r+ v+  + + +  gL+cG ++ev+ve
  KIR66153.1  76 RFGVT--GADAFaaGLTCGGTIEVYVE 100
                 56665..4456779***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2988.32
//
Query:       KIR66154.1  [L=277]
Description: hypothetical protein TK50_13170 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-13   50.4   0.0    3.4e-13   49.7   0.0    1.3  1  FAD_binding_5  FAD binding domain in molybdopterin dehydrogen


Domain annotation for each model (and alignments):
>> FAD_binding_5  FAD binding domain in molybdopterin dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   1.9e-17   3.4e-13      12     170 ..       7     172 ..       4     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 1.9e-17
                    HHHHHHHHH..CTTSEEESS-TTHHHHHHHTT---SEEEEGTTSGGGS-E.EEESSEEEEETTSBHHHHHHHHHHHHHHHHSH....HHHHT.SS- CS
  FAD_binding_5  12 eealallaa..epdaklvaGgtdlgvlmkekvarpehliditgipelkei.eeteggleiGAavtlselaaealvrerypals....ealek.iAs 99 
                    ++++a+ a+  +++ + ++Ggt l  + + +v+r+++l  ++   +l+   + +e gl + A++t++el    +    +p+l       +++ +As
     KIR66154.1   7 QDVIAADADawREGDRWLGGGTHLFAQPQPQVRRLRDLTALGWP-PLRVSpDPDEPGLDVAATCTVAELS-RYAPPPCWPSLGplirGCCDAfLAS 100
                    55555555556778899*********************999987.6665537779**************5.55556667777766654444426** PP

                    HHHHHH-BHHHHHHHT-TT-SSHHHHHHTTEEEEEEESSE.EEEEECHHHEEETTEESS-TT-EEEEEEEE- CS
  FAD_binding_5 100 pqiRnvaTiGGNlataspisDlapaLlaldAevelrsaeg.erevpleeflkgpgktalepgelitaveiPa 170
                     ++ nvaT+GGNl+ a p++ ++ +  a+  +  +r+ +g +r+vp++ ++++ g t+l+p+e + ++++Pa
     KIR66154.1 101 FKVWNVATVGGNLCAALPAGPMISLVTAAAGSCLIRDLAGrRRRVPATGLVRDVGVTVLRPDEYLHTIRLPA 172
                    *************************************99999*****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       209  (0.0116571); expected 358.6 (0.02)
Passed bias filter:                      148  (0.00825478); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2121.67
//
Query:       KIR66155.1  [L=911]
Description: aldehyde oxidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.4e-151  503.8   6.9   7.6e-151  503.3   6.9    1.2  1  Ald_Xan_dh_C2  Molybdopterin-binding domain of aldehyde dehyd
      1e-28   99.9   0.1    2.2e-28   98.8   0.1    1.6  1  Ald_Xan_dh_C   Aldehyde oxidase and xanthine dehydrogenase, a
    4.2e-23   81.2   0.7    9.2e-23   80.1   0.7    1.6  1  Fer2_2         [2Fe-2S] binding domain
      0.001   19.0   3.7     0.0014   18.5   2.2    2.1  2  Fer2           2Fe-2S iron-sulfur cluster binding domain
     0.0036   17.3   0.1      0.027   14.5   0.2    2.1  2  Fer2_3         2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> Ald_Xan_dh_C2  Molybdopterin-binding domain of aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  503.3   6.9  2.1e-154  7.6e-151       8     550 .]     311     842 ..     306     842 .. 0.94

  Alignments for each domain:
  == domain 1  score: 503.3 bits;  conditional E-value: 2.1e-154
                    TEEE..EEEEE-HHHHHHH-S.EEEEEEEEEEBE---SS--EEEEEEETCTTEEEEEES-SSHHHHHHHHHHHHT--GGGEEEE-SB-S--TTTTS CS
  Ald_Xan_dh_C2   8 nvla..kiekGdveaafaeadhvvegefrtgrqehfylEtqaalavpddedgeltvysstqaphevrrlvaevlglpenkvrvivprvGGGFGgKt 101
                    nv+a  +   Gdv+a+fa+ad+v e++frt+r++h++lEt++a++ + d dg+++v sstq+p+ +rr++a++++lp++++rv++ rvGGGFGgK 
     KIR66155.1 311 NVAAelHGGCGDVAAGFAAADVVYEETFRTQRVQHAHLETHCAIVSF-DPDGRIVVRSSTQTPFLTRRALARIFDLPAERIRVVAGRVGGGFGGK- 404
                    56663333469************************************.66*********************************************. PP

                    S--HHHHHHHHHHHHHTS-EEEE--HHHHHHHS-EEEEEEEEEEEEE-TTS-EEEEEEEEEEEESSTHHHCHCCHCCTTGGGTTTB--SEEEEEEE CS
  Ald_Xan_dh_C2 102 qsvplevlaalaAkktgrpVklvldReedmlatgkrhpfkikykvgadkdGkitaldvdlladaGayadlspavleralshldgpYkipnvrvegr 197
                    q++++e +a laA++tgrpVkl ++R e+++a+++rhpf+++++vg ++dG++tal++++++d+Gay +++p+vl ++++++ ++Y++p+ r+++ 
     KIR66155.1 405 QEMLVEDVALLAALRTGRPVKLEFTRAEQFTAATTRHPFTVRVRVGGRRDGTLTALRLRVVSDTGAYGNHGPGVLFHGCAESVAVYRCPATRIDAF 500
                    ************************************************************************************************ PP

                    EEE-SSS-EE-SSTTTHHHHHHHHHHHHHHHHHHHT--HHHHHHHHBCECGCC...SEEET...EESSS-HHHHHHHHHHHHTHHHHHHSCCHHCC CS
  Ald_Xan_dh_C2 198 vvytNtppntafRGfGgpqamfalErlmdelAeelgldplelRrrNlikpgel..tpygqp...vydsgdlpelldklkessdyeerraeqaefna 288
                    +vytNt+p++afRG+G  q+ fa+E+++delA++lg+ p e+R rN++++g+   tp g++      s++l+++ld +++++   +r    a + a
     KIR66155.1 501 AVYTNTVPAGAFRGYGLGQVSFAVESAVDELARRLGVAPEEFRARNVVRDGDDlvTPAGHAadlAIRSYGLDQCLDVVRSAA---ARPGTGAGAPA 593
                    *************************************************9987567877767886799*********99987...66667777778 PP

                    TECEEEEEEEEEEEEBS--S.EETTEEEEEEEEE-TTS-EEEEESS--SSS-HHHHHHHHHHHHHT--GGGEEEE-SBTTSSS----S-TT-HHHH CS
  Ald_Xan_dh_C2 289 gwkkrGiglapvvegiglgftakflnqegalvrvntdGsvtvstggtemGqGletklaqiaaeeLgvpledvrvvegdtdkvpngsgtaaSrstdl 384
                    g + +G g a+++ ++  g+     +++ a++++++ G  ++ +g++e+G+G+ t++ qiaa++Lg +++++rv+++dt+ v +++g++aS++t++
     KIR66155.1 594 G-WLVGEGSAVAMIAT--GP--PGGHHGRARLSLTPAGGYQLDVGTAEFGNGSTTVHRQIAADVLGATVDRIRVRQSDTALVGHDTGAFASTATTV 684
                    8.67999999999999..44..2356778******************************************************************* PP

                    HHHHHHHHHHHHHHHHHHHHH.HHCTS-CCCEEEETTEEEETEEEECHHHHHHHHHHTTSSEEEEEEE...EEEETHCHCSBBEEEEEEEEEEEEE CS
  Ald_Xan_dh_C2 385 ngnAvkkAaeklrerllkiaa.ellevspedleledgkvvvkeksvslaelaaaaylervslsatgfyktldeetgkgppfayfaygaavaeVevD 479
                    +g+Av++Aa +lr+ ll++aa +  +++p+ l+l  + v+  ++ ++la+l + a  ++v+ +a g+          + + +++a+ ++   V+vD
     KIR66155.1 685 AGTAVLRAATALRALLLDLAAgARPGADPAGLRLGPDAVHGGGAPLPLADLHRLAAARGVPPTAAGHA---------DGAERSVAFNVHWFRVAVD 771
                    *********************8899*********888888888888*******998999999999997.........666789************* PP

                    TTT--EEEEEEEEEEE-BS-S-HHHHHHHHHHHHHHHHHHHHT---EEETTTEESS-STTTS----GGGS- CS
  Ald_Xan_dh_C2 480 tetgevkvlrvvivhDvGksiNpaivegQieGGfvqGiGlalmEelvydedGqlltasladYkiPtaadiP 550
                    +etge++vlr v + D+G+++Np+ ++ Q+eGG++q++G++l E++++d+ G+++t++++dY++Pt+ad+P
     KIR66155.1 772 PETGEIRVLRSVHAADAGTVLNPMQCRAQVEGGVAQALGATLAEHVRLDAGGRVTTTGFRDYHLPTFADVP 842
                    **********************************************************************9 PP

>> Ald_Xan_dh_C  Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.1     6e-32   2.2e-28       1     110 []     167     279 ..     167     279 .. 0.93

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 6e-32
                   TT-SCCGGGCC-TTTEEEEEEE-SSSSEEEEEEE-HHHHCSTTEEEEEEHHHHCCGTECCT..TSSS-EE.EESS-SSEESSTT-EEEEEEESSHHH CS
  Ald_Xan_dh_C   1 tGeavYvdDipapgalylafvrStkahAkivsidvsaalalpGVvavitakdlpkenkaig..siledee.dallaedkvrsvgqavaavvAedeet 94 
                   tG a+++ D+++pg +++++vrS+ +hA+iv id+saala+pGV+av+t+ d p++  +++  ++++d++ d+  ++d vr+vgq vaavvAe+e++
    KIR66155.1 167 TGAARFTADVSVPGLAHVRLVRSPLPHARIVDIDASAALAVPGVLAVLTHRDAPATLFSTAqhENPDDDPaDTRVLDDVVRHVGQRVAAVVAETEAA 263
                   899*****************************************************999986555555547899*********************** PP

                   HHHHHHT-EEEEEE-- CS
  Ald_Xan_dh_C  95 ArkAaklvkveYeelp 110
                   A++ + lv+v+Y++lp
    KIR66155.1 264 AEQGCALVRVDYRPLP 279
                   *************986 PP

>> Fer2_2  [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.7   2.6e-26   9.2e-23       1      75 [.      70     138 ..      70     139 .. 0.89

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 2.6e-26
      Fer2_2   1 TveglgeeleelhpvqeafveegasqCGyCtpGfvmsaaalleenepkpteeeirealsgnlCRCtgYrpivdAv 75 
                 T+eg+++ +    + q++f++++++qCG+Ct+Gf+m+a+al e +     ++++  al+gnlCRCtgYr+i+dA+
  KIR66155.1  70 TIEGVAAVPG-GAETQRRFLDAQGFQCGFCTAGFIMTAVALDEAQ-----RADLPAALKGNLCRCTGYRSIADAL 138
                 8999996633.579***************************6444.....689********************97 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   2.2   3.9e-07    0.0014       2      49 ..       4      50 ..       3      67 .. 0.85
   2 ?   -3.2   0.0       2.5   8.8e+03      39      46 ..      94     101 ..      91     122 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.9e-07
                ETTTEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEE CS
        Fer2  2 tidgkevevevadgettlldaaeenggidipysCggggCgtClvevle 49
                 ++g++  v +++g++ l  +++e+g  +++ +C  g Cg+C+v+v+ 
  KIR66155.1  4 RVNGQPCAV-APTGGQCLRGYLREQGWFGVKKGCDTGDCGACTVHVDG 50
                688998888.7899999***************************9984 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.5
                 SSSTTEEE CS
        Fer2  39 gCgtClve 46 
                 +Cg C++ 
  KIR66155.1  94 QCGFCTAG 101
                 59999864 PP

>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   7.5e-06     0.027      49      78 ..      33      62 ..      26      79 .. 0.79
   2 ?   -0.7   0.0      0.38   1.4e+03      18      62 ..     763     807 ..     753     813 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.5e-06
      Fer2_3 49 rasCregiCGscavainGkptlaCtatikd 78
                ++ C  g CG+c+v ++G p   C     +
  KIR66155.1 33 KKGCDTGDCGACTVHVDGVPVHSCLYPAVR 62
                578*********************876544 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.38
      Fer2_3  18 vqeyeveaeeedtvldaLlkikeevdptlafrasCregiCGscav 62 
                 v+ ++v +++e+  +++L  ++     t+   ++Cr+++ G  a 
  KIR66155.1 763 VHWFRVAVDPETGEIRVLRSVHAADAGTVLNPMQCRAQVEGGVAQ 807
                 567899999999999**********9***999****999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 6050.38
//
Query:       KIR66156.1  [L=214]
Description: hypothetical protein TK50_13185 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 1389.14
//
Query:       KIR66157.1  [L=169]
Description: RNA polymerase sigma24 factor [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-15   56.9   0.2      2e-15   56.2   0.2    1.4  1  Sigma70_r4_2     Sigma-70, region 4
    1.5e-09   37.5   4.9      2e-09   37.1   4.0    1.8  1  Sigma70_r2       Sigma-70 region 2
      7e-07   28.7   0.3      7e-07   28.7   0.3    1.7  2  Sigma70_r4       Sigma-70, region 4
      7e-05   22.7   0.3    0.00012   22.0   0.3    1.4  1  Phage_antitermQ  Phage antitermination protein Q
    7.3e-05   22.7   4.4    0.00027   20.9   4.4    1.9  1  Sigma70_ECF      ECF sigma factor
    9.5e-05   22.1   0.2    9.5e-05   22.1   0.2    2.2  2  HTH_23           Homeodomain-like domain
     0.0001   22.1   0.0    0.00031   20.6   0.0    1.9  1  Terminase_5      Putative ATPase subunit of terminase (gpP-li
     0.0012   18.3   0.1     0.0049   16.2   0.1    2.1  1  HTH_Tnp_ISL3     Helix-turn-helix domain of transposase famil
     0.0014   18.7   0.3     0.0065   16.6   0.2    2.3  1  HTH_28           Helix-turn-helix domain
     0.0022   17.8   0.6     0.0048   16.7   0.6    1.6  1  HTH_30           PucR C-terminal helix-turn-helix domain
     0.0022   17.5   0.0     0.0052   16.3   0.0    1.6  1  GerE             Bacterial regulatory proteins, luxR family
      0.004   16.9   0.1      0.016   15.0   0.1    2.0  1  HTH_AsnC-type    AsnC-type helix-turn-helix domain
     0.0076   16.0   0.1      0.015   15.1   0.1    1.5  1  HTH_38           Helix-turn-helix domain
  ------ inclusion threshold ------
      0.024   15.3   0.1      0.056   14.1   0.1    1.6  1  Methyltransf_25  Methyltransferase domain
      0.028   14.7   1.2      0.028   14.7   1.2    2.4  2  TPR_12           Tetratricopeptide repeat
      0.094   12.9   1.2       0.31   11.2   1.2    2.0  1  TPR_2            Tetratricopeptide repeat
       0.12   13.0   8.6        0.1   13.2   5.3    2.6  2  TPR_16           Tetratricopeptide repeat
       0.12   11.9   0.0        0.2   11.2   0.0    1.3  1  HTH_24           Winged helix-turn-helix DNA-binding
       0.15   12.5   0.0       0.29   11.6   0.0    1.5  1  HTH_40           Helix-turn-helix domain
        1.4   10.0   7.9        0.6   11.1   3.3    2.7  2  TPR_14           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.2   2.2e-18     2e-15       2      54 .]      99     151 ..      98     151 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 2.2e-18
                   HHHHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   2 qalrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                    a+ +al++ p +qr++++l++l gls +EIA++ g++e+tVk+rl+R+r++L
    KIR66157.1  99 VAIVAALRHIPAEQRRAVVLYHLVGLSVAEIAAEVGTNENTVKTRLARGRRAL 151
                   5899**********************************************997 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   4.0   2.2e-12     2e-09       2      68 ..      11      75 ..      10      85 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 2.2e-12
                HHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTS CS
  Sigma70_r2  2 verylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkr 68
                +++   +v++ ++ ++g++a+aeD v ea+ r+w++++  + +   s++aw+ r+a + a  ++Rk 
  KIR66157.1 11 YSASAHRVLGQLYAMVGNRAEAEDAVAEAYARAWDRWAAVR-GCD-SPEAWVRRVAYRVAVSAWRKT 75
                77788899******************************999.888.9******************95 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       5.7   5.1e+03      33      42 ..      77      86 ..      76      87 .. 0.78
   2 !   28.7   0.3   7.8e-10     7e-07       1      48 [.     104     151 ..     104     153 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.7
                -HHHHHHHHH CS
  Sigma70_r4 33 SrerVrqiek 42
                 r+r++++e+
  KIR66157.1 77 NRMRAHRREA 86
                6899999985 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 7.8e-10
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 aL++ p+++r+ ++l+ + gl+ +EI+++ g  + +V+ +++r++r L
  KIR66157.1 104 ALRHIPAEQRRAVVLYHLVGLSVAEIAAEVGTNENTVKTRLARGRRAL 151
                 7999*****************************************998 PP

>> Phage_antitermQ  Phage antitermination protein Q
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.3   1.3e-07   0.00012      38     107 ..      83     152 ..      42     159 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.3e-07
  Phage_antitermQ  38 ssksrpsCsDedgliid..gcvarLkkkrpeelellvdyYvfgvskraiarklkisekevrkklqkaegfie 107
                      +++  ++    d+  +d  ++va L++  +e+ + +v y+++g+s  +ia +++++e++v+++l+ ++  ++
       KIR66157.1  83 RREATEQRV--DAASVDhvAIVAALRHIPAEQRRAVVLYHLVGLSVAEIAAEVGTNENTVKTRLARGRRALA 152
                      333333333..44444422689******************************************99987665 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   4.4     3e-07   0.00027     129     183 ..     101     155 ..      14     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3e-07
  Sigma70_ECF 129 alerllsldpeqarlvelrkleGlsveEiAeklgvskrtverrlalaRawlerel 183
                   +  l + + eq+r v l  l Glsv+EiA+++g  + tv+ rla  R  l+++l
   KIR66157.1 101 IVAALRHIPAEQRRAVVLYHLVGLSVAEIAAEVGTNENTVKTRLARGRRALAAHL 155
                  456788899***********************************99998888776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.5       5.1   4.6e+03      38      39 ..      73      74 ..      59      87 .. 0.63
   2 !   22.1   0.2   1.1e-07   9.5e-05       4      39 ..     111     145 ..     109     156 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.1
      HTH_23 38 lk 39
                +k
  KIR66157.1 73 RK 74
                33 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 1.1e-07
      HTH_23   4 ereRlrillllaeGlsvreIAreLgvsrrTvyrwlk 39 
                 e++R+ +l++l  Glsv+eIA+e g +++Tv   l 
  KIR66157.1 111 EQRRAVVLYHLV-GLSVAEIAAEVGTNENTVKTRLA 145
                 789999999999.******************86554 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.4e-07   0.00031       3      31 ..     112     141 ..     110     159 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.4e-07
  Terminase_5   3 RrqArlLYw.qGyrvaeIAeelglkeatVy 31 
                   r+A+ LY+  G +vaeIA+e+g +e+tV 
   KIR66157.1 112 QRRAVVLYHlVGLSVAEIAAEVGTNENTVK 141
                  699*****747******************7 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   5.5e-06    0.0049      18      50 ..     114     146 ..     112     147 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.5e-06
  HTH_Tnp_ISL3  18 ayilelllesrsvkavArqlgvSwtTVwrildr 50 
                   ++++  +l + sv+++A+++g++++TV+ +l r
    KIR66157.1 114 RAVVLYHLVGLSVAEIAAEVGTNENTVKTRLAR 146
                   55666666666*****************99876 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   7.3e-06    0.0065       1      35 [.     112     146 ..     112     158 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.3e-06
      HTH_28   1 qRleiikllaaGhsvreaArelgisrrtvyrWikr 35 
                 qR+ ++++ + G sv+e+A+e+g+++ tv+  + r
  KIR66157.1 112 QRRAVVLYHLVGLSVAEIAAEVGTNENTVKTRLAR 146
                 899**************************988766 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.6   5.3e-06    0.0048       8      49 ..     119     160 ..     113     161 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.3e-06
                 HHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHH CS
      HTH_30   8 ylenggnisatAkaLhvHrnTlryRLrrieellgldlddpdd 49 
                 y   g ++++ A++ +   nT++ RL r ++ l   l++p++
  KIR66157.1 119 YHLVGLSVAEIAAEVGTNENTVKTRLARGRRALAAHLTEPEH 160
                 555689*******************************99985 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.8e-06    0.0052      10      40 ..     116     146 ..     111     154 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.8e-06
                 HHHHHCTTS-HHHHHHHHTS-HHHHHHHHHH CS
        GerE  10 vLrllaeGksnkeIAeelniSekTVkvhksn 40 
                 v  +   G+s+ eIA+e +  e+TVk+ +++
  KIR66157.1 116 VVLYHLVGLSVAEIAAEVGTNENTVKTRLAR 146
                 5567789********************9987 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.8e-05     0.016      18      40 ..     124     146 ..     123     146 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.8e-05
  HTH_AsnC-type  18 isyaeLAervGlSestvlrRvrr 40 
                    +s+ae+A++vG  e+tv  R++r
     KIR66157.1 124 LSVAEIAAEVGTNENTVKTRLAR 146
                    599*****************998 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.7e-05     0.015       8      43 ..     111     146 ..     106     147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.7e-05
      HTH_38   8 eeReeIerllaeGlslreIArrLgrspsTIsRElkR 43 
                 e+R+     +  Gls++eIA ++g + +T+   l R
  KIR66157.1 111 EQRRAVVLYHLVGLSVAEIAAEVGTNENTVKTRLAR 146
                 666666667789******************888877 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   6.3e-05     0.056      16      85 ..      41     116 ..      33     120 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.3e-05
                      HCTS.TSSEEEEEESSHHHHHHHHHHHHHTTT.....TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHH CS
  Methyltransf_25  16 akrl.gkakvtgvDiseemleaareraeeegl.....nvefvqgdaedlpfedgsfDlvvssgalhhlsdedleka 85 
                      a+++   a v g+D  e+ +++++ r++ + +     +++ ++ +a++   +++s+D v ++ al h++ e+++++
       KIR66157.1  41 ARAWdRWAAVRGCDSPEAWVRRVAYRVAVSAWrktvnRMRAHRREATEQRVDAASVDHVAIVAALRHIPAEQRRAV 116
                      44443248899999999999999888866433445689999********************988*****9998876 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.2   3.1e-05     0.028      44      75 ..      12      43 ..       4      45 .. 0.91
   2 ?   -0.8   0.1       2.2   1.9e+03      30      54 ..     127     149 ..     125     157 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.1e-05
      TPR_12 44 tattlrnLgrlyralgryeeAlelleealaia 75
                 a++ r Lg+ly + g+ +eA+++  ea+a+a
  KIR66157.1 12 SASAHRVLGQLYAMVGNRAEAEDAVAEAYARA 43
                7999*************************975 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.2
      TPR_12  30 leiarrllGpdhpltattlrnLgrl 54 
                  eia ++  +++++t+ t+ + gr 
  KIR66157.1 127 AEIAAEV--GTNENTVKTRLARGRR 149
                 5788888..7778888888887765 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.2   0.00035      0.31       1      29 [.      13      41 ..      13      43 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00035
       TPR_2  1 aealynlGlayyklgdyeeAleafekAle 29
                a a+  lG++y+  g+ +eA++a  +A +
  KIR66157.1 13 ASAHRVLGQLYAMVGNRAEAEDAVAEAYA 41
                569999*****************999976 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   5.3   0.00012       0.1      33      65 ..      12      44 ..       4      46 .. 0.85
   2 ?   -0.8   0.1       2.8   2.5e+03      21      28 ..     148     155 ..     141     161 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00012
      TPR_16 33 aaeAllllgdaalrqgrlaeAaalyraalraap 65
                 a A+  lg++++  g+ aeA++++++a++ a+
  KIR66157.1 12 SASAHRVLGQLYAMVGNRAEAEDAVAEAYARAW 44
                589*******************88877776665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.8
      TPR_16  21 eaalkrdp 28 
                 ++al+++ 
  KIR66157.1 148 RRALAAHL 155
                 34444444 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00022       0.2      17      40 ..     123     146 ..     122     146 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
      HTH_24  17 risqreLAerlglSpstvnrrlkr 40 
                 ++s +e+A ++g   +tv++rl r
  KIR66157.1 123 GLSVAEIAAEVGTNENTVKTRLAR 146
                 699******************976 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00032      0.29      10      38 ..     121     149 ..     111     162 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00032
      HTH_40  10 eeglsieeIAkerglkesTIegHLaelie 38 
                   gls++eIA+e g +e+T+ + La+  +
  KIR66157.1 121 LVGLSVAEIAAEVGTNENTVKTRLARGRR 149
                 669******************99998655 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.3   0.00067       0.6       3      38 ..      15      50 ..      13      52 .. 0.92
   2 ?   -1.4   0.0       6.8   6.1e+03      25      30 ..     148     153 ..     140     162 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00067
      TPR_14  3 allalaeallalGdpdeAiallrralalaPddaeaw 38
                a++ l+++++  G+ +eA+++  +a a+a+d ++a 
  KIR66157.1 15 AHRVLGQLYAMVGNRAEAEDAVAEAYARAWDRWAAV 50
                7889****************************9986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 6.8
      TPR_14  25 rralal 30 
                 rrala+
  KIR66157.1 148 RRALAA 153
                 333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.49
# Mc/sec: 1026.89
//
Query:       KIR66158.1  [L=280]
Description: hypothetical protein TK50_13195 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0026   17.3  15.7     0.0037   16.8  15.7    1.1  1  FAP       Fibronectin-attachment protein (FAP)
  ------ inclusion threshold ------
       0.14   12.0   0.4       0.26   11.1   0.1    1.5  2  VirB8     VirB8 protein
       0.95    9.8   3.9       0.28   11.5   0.6    1.8  2  DUF3040   Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> FAP  Fibronectin-attachment protein (FAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8  15.7   6.2e-07    0.0037       8     125 ..      35     161 ..      29     171 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.2e-07
         FAP   8 skrrkglsktlaiaavagasa.valalPavanadpePaPppPstaeaapaeaaaapaPaapa...paPap....adpnapeaaPap...adPnapappp 95 
                 ++rr+++++++++aa+a a++ + +al a +   p+P P+ P+  ++ap++ ++ p+P++p    ++Pap    + p+ +++ P+    a+P +++ pp
  KIR66158.1  35 ARRRRRRAASVSLAALAVAALgAGVAL-AGSGGRPHPVPIGPAGPTSAPVA-SPWPDPTSPGpdrTSPAPertsSGPERTSSGPTGgtsAPPTGSSGPP 131
                 567888888888888888877344555.66778899999999887777773.33445555542224444433333333334444323347778888888 PP

         FAP  96 adPnapappavdPnapepgrvdnavGGfsy 125
                 a P    p       +  +rv  ++GG+s 
  KIR66158.1 132 AGPPGGDPVLSGQRQVTVVRVAASAGGVSL 161
                 888888887777788899*********996 PP

>> VirB8  VirB8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   4.4e-05      0.26       8      41 ..      30      64 ..      25      79 .. 0.82
   2 ?   -3.6   0.0       1.4   8.1e+03     105     119 ..     237     251 ..     234     256 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.4e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX CS
       VirB8  8 erigsarvqarnwrlvafvslliavlavg.avvll 41
                 r g ar+ +r++  v++++l++a+l +g a++  
  KIR66158.1 30 RRRGDARRRRRRAASVSLAALAVAALGAGvALAGS 64
                57899******************999998777654 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.4
                 HHHHTB-HHHHHHHH CS
       VirB8 105 kvyllstgsaakeln 119
                 ++y+ s++sa+ +++
  KIR66158.1 237 SAYAISSQSAYLQFS 251
                 689999999999886 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   4.7e-05      0.28      33      67 ..      30      63 ..       1      82 [. 0.59
   2 ?   -2.2   0.1      0.88   5.3e+03      42      62 ..     145     165 ..     137     170 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.7e-05
     DUF3040 33 aararrrslrrlavlavllfvaGllllvlGvaaaa 67
                ++r  +r +rr++ ++v l+++++++l +Gva+a 
  KIR66158.1 30 RRRGDAR-RRRRRAASVSLAALAVAALGAGVALAG 63
                2222222.233366667777777777777777654 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.88
     DUF3040  42 rrlavlavllfvaGllllvlG 62 
                 r+++v+ v++ + G+ ll +G
  KIR66158.1 145 RQVTVVRVAASAGGVSLLDGG 165
                 455566666666677777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2248.71
//
Query:       KIR66159.1  [L=337]
Description: 4-hyroxy-2-oxovalerate aldolase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-61  206.9   4.1    4.7e-61  206.7   4.1    1.1  1  HMGL-like  HMGL-like
    1.4e-32  111.0   0.3    3.2e-32  109.8   0.3    1.7  1  DmpG_comm  DmpG-like communication domain


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.7   4.1   5.2e-65   4.7e-61       2     264 .]       5     263 ..       4     263 .. 0.98

  Alignments for each domain:
  == domain 1  score: 206.7 bits;  conditional E-value: 5.2e-65
                 -EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--.............TSGGGT.THHHHHHHS---TT-B.....--EE-SSHHHHHHHHH. CS
   HMGL-like   2 vkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEv.............gfpaaseddfevvraiakavkkar...ilalvrarekdikaavea 84 
                 +++ d+tLRDG +a+++++++++++a+a+aLd+agv++iEv             g +a++  d+e+++a+a++v  a+   +l++ + + + +++a + 
  KIR66159.1   5 IYVQDVTLRDGMHAIRHRYTLDQVRAVAAALDAAGVAAIEVshgdglagssinyGPGAHT--DWEWIEAAAEVVRRATltgLLLPGIGTVRELRKAWD- 100
                 7889**********************************************9988888888..***************988999999************. PP

                 ...TT-SEEEEEEES-HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-ETTT-BTTTBS--HHHHHHHHHHHHHHT-SEEEEEETTS---HHHHHHHHHH CS
   HMGL-like  85 lkgagakrvhvfiatselhlkaklkkdreevakkaeeavkaarslgkdvelsledasrtdleflaevveaaeeaGatriniaDtvGvltPneaaelisa 183
                     g+++++++++++e              a++a+++++aar+lg+dv+ +l+++++++++ lae++  +e+aGa ++++ D+ G lt++ ++e+++a
  KIR66159.1 101 ---HGVRSIRIATHCTE--------------ADIANQHIAAARELGMDVSGFLMMSHMAPPKLLAEQARIMEAAGAHCVYVTDSGGRLTMDGVRERVRA 182
                 ...**************..............******************************************************************** PP

                 HHHHS-.GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT-B----HHHHHHHHHHH CS
   HMGL-like 184 lkervkdkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealgvdtgldlqklrsiaalv 264
                  ++++ +++++ +H+H++lGl+van++aAve+G+ rvd++++G G++aGn+++e++va +  +g+++g dl  l+++a+++
  KIR66159.1 183 YRDVLAPETQIGIHAHHNLGLGVANSVAAVEEGVYRVDASLAGQGAGAGNCPIEAFVAVADLTGWEHGCDLFALMDAADDI 263
                 *****************************************************************************9976 PP

>> DmpG_comm  DmpG-like communication domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.3   3.6e-36   3.2e-32       1      62 [.     272     333 ..     272     334 .. 0.97

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 3.6e-36
   DmpG_comm   1 pridreslvlGyaGVYSsFllhaeraaerygvdardilvelGrrklvgGQEDliidvAleLa 62 
                 +r+dre+l+lGyaGVYSsFl+hae+aa++yg+d+r+ilve+GrrklvgGQED+i+d+Al+L+
  KIR66159.1 272 VRVDRETLTLGYAGVYSSFLRHAEAAAAEYGLDTRSILVEVGRRKLVGGQEDMIVDIALDLR 333
                 589*********************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2459.97
//
Query:       KIR66160.1  [L=311]
Description: acetaldehyde dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-63  210.7   0.2    1.2e-62  210.2   0.2    1.2  1  AcetDehyd-dimer  Prokaryotic acetaldehyde dehydrogenase, dime
    5.4e-12   46.2   0.1    2.1e-11   44.3   0.0    2.0  2  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
     0.0006   20.6   0.0     0.0015   19.4   0.0    1.7  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
     0.0031   18.2   0.2       0.01   16.5   0.0    2.0  2  NAD_binding_3    Homoserine dehydrogenase, NAD binding domain
     0.0092   16.7   0.1      0.035   14.8   0.0    2.1  2  CoA_binding      CoA binding domain
  ------ inclusion threshold ------
      0.044   14.0   0.2      0.093   12.9   0.2    1.5  1  Flagellin_IN     Flagellin hook IN motif


Domain annotation for each model (and alignments):
>> AcetDehyd-dimer  Prokaryotic acetaldehyde dehydrogenase, dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.2   0.2   3.9e-66   1.2e-62       1     138 []     129     284 ..     129     284 .. 0.99

  Alignments for each domain:
  == domain 1  score: 210.2 bits;  conditional E-value: 3.9e-66
  AcetDehyd-dimer   1 CgGQAtiPivaavsrvaeveyaeivasiasksaGpgtranideftetTakaieevggakkgkaiiilnpaepplimrdtvyalveeeadeeaie 94 
                      CgGQAtiP+vaa+s+ a+++yaeivasi+s+saGpgtranideftetT++aie+vgg+++gkaii+lnpaepplimrdtv+++v+ + d++a++
       KIR66160.1 129 CGGQATIPMVAAISSAATTHYAEIVASISSRSAGPGTRANIDEFTETTSRAIEQVGGVRRGKAIIVLNPAEPPLIMRDTVFCVVD-DCDRDAVT 221
                      *************************************************************************************.99****** PP

  AcetDehyd-dimer  95 esveemveevqeyvPGYrlkqevqfd...................eekvsvllevegagdylP 138
                      ++v +m+e+v++yvPGYrlkq+vqf+                   +  vsv+levegag+ylP
       KIR66160.1 222 AAVLAMAEKVRAYVPGYRLKQDVQFRritasspeadlvphapprdRWVVSVFLEVEGAGHYLP 284
                      **************************9******999999999988899**************9 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   7.1e-15   2.1e-11       1     118 [.       5     118 ..       5     121 .. 0.88
   2 ?   -1.0   0.0      0.78   2.3e+03      36      48 ..     160     172 ..     135     244 .. 0.65

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 7.1e-15
                     EEEEETTTSHHHHHH.HHHHHCTSSEEEEEEEESTT.TTTSBHHHHSG..GGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTS CS
  Semialdhyde_dh   1 kvaivGatGyvGqel.lrlLeehpevelvvllsssr.saGkklaeavk..aleegkdlkvedvdeeelkevdivflalpagvskelapklaeagv 91 
                     kvai+G +G++G++l +++L+ +  +e+++l++ +  s+G + a++ +   + +g        d  ++ +v ivf a++a+++ +  ++l+ a++
      KIR66160.1   5 KVAIIG-SGNIGTDLmIKILRGSETMEVAALVGIDPrSDGLARAARLGvpVVPTGVRGL---LDHPDFGDVRIVFDATSAQAHIANDAALRGADL 95 
                     7*****.*******98999999***********9888********99933333333333...5669***************************** PP

                     EEEESSSTTTTSTTSEBE-HHHHGGGG CS
  Semialdhyde_dh  92 kviDlssdfRlkddavyvlpevnreai 118
                     +++Dl+++       +yv+p+vn +++
      KIR66160.1  96 TLVDLTPAA----IGPYVVPPVNLDEH 118
                     *********....9*********7765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.78
                     TTTSBHHHHSGGG CS
  Semialdhyde_dh  36 saGkklaeavkal 48 
                     saG   +++  + 
      KIR66160.1 160 SAGPGTRANIDEF 172
                     3665555444433 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   4.9e-07    0.0015       2      75 ..       5      83 ..       4      95 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.9e-07
                  EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH.HHHTTHEEESS.HHHHHTCT...TESEEEE-S-GGGH CS
  GFO_IDH_MocA  2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeav.aesfgveaysd.leelladp...eidavivatpngth 75
                  +vaiiG+G+ig++ + ++ + +++ ev+al+ +d+ +   + a+++gv+++   ++ ll++p   ++++v+ at ++ h
    KIR66160.1  5 KVAIIGSGNIGTDLMIKILRGSETMEVAALVGIDPRSDGLArAARLGVPVVPTgVRGLLDHPdfgDVRIVFDATSAQAH 83
                  79************99*****9***********996655557999****666659999999966667777766666655 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.4e-06      0.01       1      71 [.      10      82 ..      10      96 .. 0.88
   2 ?   -3.2   0.0       4.4   1.3e+04      85      98 ..     218     231 ..     215     234 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.4e-06
                   --SHHHHHHHHHHHH---SSEEEEEEEEESS.EEE-TTHHHHHT--CB---HHHHHHHH...S-EEEEE-S--HH CS
  NAD_binding_3  1 GlGaiGsavleqlkrqqseielelvavadrd.sllskdrkallasealtldlddliahl...dpdvvVEcassea 71
                   G G+iG++++ +++r+ +  ++e++a++  d      +r+a l+   +++ +  l++h+   d+++v +++s +a
     KIR66160.1 10 GSGNIGTDLMIKILRGSE--TMEVAALVGIDpRSDGLARAARLGVPVVPTGVRGLLDHPdfgDVRIVFDATSAQA 82
                   89***************9..699999999994445555999********************99********9986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.4
                    EEE-S--CGGG-HH CS
  NAD_binding_3  85 dvvtankgaladea 98 
                    d vta + a+a+++
     KIR66160.1 218 DAVTAAVLAMAEKV 231
                    67899999999765 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.2e-05     0.035       3      52 ..       3      56 ..       1      98 [. 0.75
   2 ?   -2.4   0.0       2.8   8.3e+03      21      40 ..     171     190 ..     162     198 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.2e-05
                 TEEEEEETTTSHHHHHH.HHHHHHHHECEEEEEEC-TTTTTCEET...TEEEES CS
  CoA_binding  3 dtkviviGagglgiagl.yhfkeklkygikavfgvnprkvgtevl...glpvyk 52
                 +tkv++iG g+ g+ ++    +    +++ a++g++pr  g       g+pv +
   KIR66160.1  3 KTKVAIIGSGNIGTDLMiKILRGSETMEVAALVGIDPRSDGLARAarlGVPVVP 56
                 79************************************4432222245777764 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.8
                  HHHHHHHECEEEEEEC-TTT CS
  CoA_binding  21 hfkeklkygikavfgvnprk 40 
                   f e  ++ i++v+gv  +k
   KIR66160.1 171 EFTETTSRAIEQVGGVRRGK 190
                  56677778888899988776 PP

>> Flagellin_IN  Flagellin hook IN motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   3.1e-05     0.093      14      47 ..     140     173 ..     128     180 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.1e-05
                   EEEECTTTBCHHHHHHHHHHCCTTTEEEEEEEEC CS
  Flagellin_IN  14 tisvkagdtlddiadaINavssktGVsAsidadg 47 
                    is +a++  ++i+++I + s++ G +A+id+ +
    KIR66160.1 140 AISSAATTHYAEIVASISSRSAGPGTRANIDEFT 173
                   69999*************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2166.49
//
Query:       KIR66161.1  [L=237]
Description: hypothetical protein TK50_13215 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1771.55
//
Query:       KIR66162.1  [L=550]
Description: ABC transporter [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-41  142.4   0.0    9.1e-20   71.6   0.0    3.3  3  ABC_tran        ABC transporter
    2.3e-17   63.8   4.9     0.0028   17.5   0.0    4.1  4  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    3.2e-11   43.1   0.1      0.016   14.6   0.0    4.1  4  SMC_N           RecF/RecN/SMC N terminal domain
    2.8e-07   30.7   0.1     0.0057   16.9   0.0    2.9  2  SbcCD_C         Putative exonuclease SbcCD, C subunit
    4.4e-07   30.6   0.1      0.054   14.0   0.0    2.9  3  AAA_23          AAA domain
    1.2e-06   28.2   0.1       0.01   15.5   0.0    2.4  2  AAA_29          P-loop containing region of AAA domain
    4.9e-05   23.3   0.0      0.068   13.1   0.0    2.5  2  RsgA_GTPase     RsgA GTPase
    5.1e-05   23.1   4.1      0.016   14.9   0.0    3.2  2  AAA_30          AAA domain
    0.00018   21.9  15.6      0.041   14.3   0.3    3.4  2  AAA_16          AAA ATPase domain
    0.00019   21.7   1.0       0.16   12.3   0.0    3.2  3  AAA_22          AAA domain
    0.00023   21.1   5.1    0.00048   20.1   5.1    1.5  1  ABC_tran_Xtn    ABC transporter
     0.0016   18.9   0.4        4.4    7.7   0.0    3.3  3  AAA             ATPase family associated with various cellula
     0.0061   16.6   0.5        0.4   10.8   0.0    2.6  2  MMR_HSR1        50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.012   15.7   9.7       0.92    9.7   0.1    3.7  3  AAA_33          AAA domain
      0.042   13.1   5.7       0.88    8.8   0.1    2.6  3  Zeta_toxin      Zeta toxin
      0.074   13.0   1.0         14    5.6   0.2    2.7  2  NTPase_1        NTPase
      0.074   12.8   0.0        2.5    7.8   0.0    2.5  3  AAA_24          AAA domain
      0.075   12.6   1.9        4.6    6.8   0.0    2.7  3  cobW            CobW/HypB/UreG, nucleotide-binding domain
      0.094   13.3   0.7        5.6    7.5   0.0    2.9  3  AAA_18          AAA domain
      0.097   12.6   0.2          3    7.7   0.0    2.4  2  NACHT           NACHT domain
       0.11   12.0   4.9        4.7    6.7   0.0    3.6  3  AAA_25          AAA domain
       0.12   12.4   0.3       0.27   11.3   0.3    1.5  1  MCU             Mitochondrial calcium uniporter
       0.16   12.0   0.5        6.1    6.9   0.0    2.8  3  Dynamin_N       Dynamin family
       0.42   10.8   0.0       0.42   10.8   0.0    3.5  4  AAA_28          AAA domain
       0.49    9.9   7.1        1.7    8.2   0.0    3.3  3  AAA_27          AAA domain
       0.51   10.0   7.1        4.3    7.0   0.0    3.3  3  Cytidylate_kin  Cytidylate kinase
       0.58    9.8   3.7       0.95    9.1   3.7    1.2  1  GrpE            GrpE
       0.85    8.6   4.7        1.2    8.1   4.7    1.1  1  Atg14           Vacuolar sorting 38 and autophagy-related sub
        4.1    4.8  23.5       0.24    8.9   0.1    3.0  3  DUF3584         Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   1.5e-22   9.1e-20       2     137 .]      23     171 ..      22     171 .. 0.82
   2 ?    4.4   0.3     0.083        51      37     117 ..     211     300 ..     200     318 .. 0.60
   3 !   62.3   0.0     1e-19   6.4e-17       4     137 .]     361     489 ..     359     489 .. 0.84

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 1.5e-22
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..................... 79 
                 +++s+++ +g ++++v +nGaGKStLl+l+ag+l+pt G+i              +   +g+lpq+  + ++ tv++                      
  KIR66162.1  23 QDLSFSV-PGGRTGLVAPNGAGKSTLLRLVAGELRPTGGSI-------------TVAGTLGYLPQHLPFTRHQTVARVlgvdhvvaalhaieagdaaee 107
                 5677777.57789****************************.............566788888888777777777777888888888888888888888 PP

                 ......HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ......esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                       ++ +  e+a+++l+  +l+d  ++++  +LSgG+ + + la+ llk+p++lllDEpt+
  KIR66162.1 108 hfttvgDDWDVEERARAELDRLGLTDVALDRRLGTLSGGEVVSLGLAAQLLKRPDVLLLDEPTN 171
                 888887333335556666666666667777777******************************8 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.083
                 -SEEEEEETTCEGGG......B-HHHCCHCEEEE-SS.--S-TTSBHHHHHHHTCHHHHHHHSTTGGTTCBGESTTS..GGS-HHHHHHH CS
                 xxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
    ABC_tran  37 pteGeilldgkdlke......qeleslrkeigvlpqe.pqlfpeltvrenesdeeiekalsklglkelkdtvvkssp..ssLSgGqkqrv 117
                  + Gei++ g + +e       e+e+++++++  +q+ ++ ++el+ +++ + +++++a ++l + +l+  v+++ +  +++S      v
  KIR66162.1 211 LDHGEIRWYGGNHTEyeqavrAEREVAERQVRQAEQDvKRQKRELQQARERAARRASTASRNLADAGLARIVAGNLKrdAQVSAARSNDV 300
                 567888777444444477777899999999999999966666666533334555555555555555544433333323355555555555 PP

  == domain 3  score: 62.3 bits;  conditional E-value: 1e-19
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH.......HHHTCHHHHHHHSTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren.......esdeeiekalsklgl 94 
                 v l+++  e+va+vG+nGaGKStLl+l+ g+ +p +G +            ++++ ++++l+q  + l+ + tv++n        s+++  ++l+++  
  KIR66162.1 361 VGLDIRGPERVALVGPNGAGKSTLLRLVGGHQEPVSGAV------------TRAEGRVAYLSQRlDLLDADRTVADNlavfapsRSEADRMNLLARFLF 447
                 67889999*******************************............7899*********888888999********755444445555555554 PP

                 GGTTCBGESTTSGGS-HHHHHHHHHHHHHHHT..SSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
    ABC_tran  95 kelkdtvvksspssLSgGqkqrvalarallkk..pkllllDEpta 137
                    +  +++     LSgG+  r  la++l  +  p+llllDEpt+
  KIR66162.1 448 ---RGARAHLPVGVLSGGELLRATLACVLNAEpaPQLLLLDEPTN 489
                 ...555555568*****************9863369********8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00015     0.095       2      26 ..      34      52 ..      33      76 .. 0.81
   2 !   17.5   0.0   4.5e-06    0.0028     232     303 .]     138     203 ..      99     203 .. 0.86
   3 !   17.5   0.1   4.7e-06    0.0029       3      21 ..     372     390 ..     371     405 .. 0.84
   4 !   15.7   0.1   1.6e-05    0.0099     216     300 ..     432     518 ..     405     521 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00015
      AAA_21  2 nvliGpNgsGKSnLLdaldllarld 26
                ++l+ pNg+GKS+LL++       +
  KIR66162.1 34 TGLVAPNGAGKSTLLRLV------A 52
                789*************98......3 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 4.5e-06
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpllld 303
                 + +  lS G    l+l++ ll ++   ++ll+DEp n+L+ ++ +rl  +l   +++ + +++++H+  lld
  KIR66162.1 138 RRLGTLSGGEVVSLGLAAQLLKRP---DVLLLDEPTNNLDGEARARLTAVL---RSWTGCLLVVSHDRALLD 203
                 5667899999999*********99...9******************99555...667778999999988876 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 4.7e-06
      AAA_21   3 vliGpNgsGKSnLLdaldl 21 
                 +l+GpNg+GKS+LL++  +
  KIR66162.1 372 ALVGPNGAGKSTLLRLVGG 390
                 79*************9855 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 1.6e-05
      AAA_21 216 lrer......gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpl 300
                 +r +        +fl +g +  lp+  lS G +   a l+ +l a + + lll+DEp n+L+    +++++l ++l + ++ +++++H+  
  KIR66162.1 432 SRSEadrmnlLARFLFRGARAHLPVGVLSGGELLR-ATLACVLNAEPAPQLLLLDEPTNNLDL---ASVAQLESALLAYRGAFVVVSHDDR 518
                 3333566666789999***************9999.8888888888888*************9...5555444444445577888888765 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.069        42      25      41 ..      32      48 ..      22      52 .. 0.81
   2 !   14.6   0.0   2.6e-05     0.016     136     211 ..     142     211 ..      93     216 .. 0.90
   3 !    8.6   0.0    0.0019       1.2      26      41 ..     370     385 ..     356     388 .. 0.85
   4 !   11.0   0.0   0.00034      0.21     136     203 ..     458     521 ..     420     532 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.069
                SEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnll 41
                + t +v pNG+GKs ll
  KIR66162.1 32 GRTGLVAPNGAGKSTLL 48
                5688999*******987 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.6e-05
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                 +LSgGe     ++L +A q  k+  + llDe   +LD + ++++  +l++ +    ++v+s+++ +l ++d++  +
  KIR66162.1 142 TLSGGE----VVSLGLAAQLLKRPDVLLLDEPTNNLDGEARARLTAVLRSWT--GCLLVVSHDRALLDEMDRIAAL 211
                 689998....478888999999999************************999..889**************98765 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0019
                 EEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnll 41 
                   a+vGpNG+GKs ll
  KIR66162.1 370 RVALVGPNGAGKSTLL 385
                 5789*********986 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00034
                 CS-HHHHHHHHHHHHHHHHCCS--S.EEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpap.lyllDeidaaLDeknvkkvaellkeksknaQfivislreemle 203
                 +LSgGe   + la +    +++pap l llDe   +LD + v+++ + l + +    f+v+s+++++l+
  KIR66162.1 458 VLSGGELLRATLACV---LNAEPAPqLLLLDEPTNNLDLASVAQLESALLAYR--GAFVVVSHDDRFLA 521
                 79****988888877...57888886889******************999998..889*****998876 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   9.2e-06    0.0057      22      89 ..     132     186 ..     116     187 .. 0.82
   2 !   10.6   0.0   0.00084      0.52      30      84 ..     456     499 ..     448     504 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 9.2e-06
     SbcCD_C  22 kekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 +++ l+r+ gtlSGGe        + ++laa++ +      ++++++LDE  ++lD+e +a+l ++l+
  KIR66162.1 132 TDVALDRRLGTLSGGEV-------VSLGLAAQLLK------RPDVLLLDEPTNNLDGEARARLTAVLR 186
                 556799***********.......55567788877......599******************998886 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00084
     SbcCD_C  30 sgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatl 84 
                 +g lSGGe        l a la +++     epa++l++LDE  ++lD  s+a+l
  KIR66162.1 456 VGVLSGGEL-------LRATLACVLNA----EPAPQLLLLDEPTNNLDLASVAQL 499
                 567788887.......77788888888....79***************9999887 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0    0.0003      0.19      11      37 ..      23      49 ..      20      52 .. 0.80
   2 ?    0.2   0.1       1.5   9.4e+02     168     190 ..     238     260 ..     204     305 .. 0.64
   3 !   14.0   0.0   8.8e-05     0.054      23      37 ..     372     386 ..     363     389 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0003
      AAA_23 11 rdqeidFskgltlItGpNGaGKTTild 37
                +d ++    g t ++ pNGaGK+T+l+
  KIR66162.1 23 QDLSFSVPGGRTGLVAPNGAGKSTLLR 49
                55555556788999***********97 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.5
      AAA_23 168 ekkllekleqekekekeleelee 190
                 e++  +++++ k ++ el++ +e
  KIR66162.1 238 ERQVRQAEQDVKRQKRELQQARE 260
                 22222222222223333333333 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 8.8e-05
      AAA_23  23 lItGpNGaGKTTild 37 
                 +++GpNGaGK+T+l+
  KIR66162.1 372 ALVGPNGAGKSTLLR 386
                 689**********97 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00089      0.55      17      39 ..      25      48 ..      18      52 .. 0.78
   2 !   15.5   0.0   1.7e-05      0.01      16      39 ..     360     385 ..     355     387 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00089
      AAA_29 17 ieidlkg.atlltGpsGsGKSTll 39
                +++++ g  t l+ p+G+GKSTll
  KIR66162.1 25 LSFSVPGgRTGLVAPNGAGKSTLL 48
                44555555899999*********8 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.7e-05
      AAA_29  16 tieidlkg..atlltGpsGsGKSTll 39 
                  + +d +g   + l+Gp+G+GKSTll
  KIR66162.1 360 GVGLDIRGpeRVALVGPNGAGKSTLL 385
                 5556666776899***********98 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0056       3.5      91     126 ..      23      58 ..      12      74 .. 0.81
   2 !   13.1   0.0   0.00011     0.068     100     136 ..     369     405 ..     363     425 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0056
                  HHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  91 eelkellkdktsvlvGqSGvGKStLinallpelelk 126
                  ++l+  + +  + lv + G+GKStL+  +++el+  
   KIR66162.1  23 QDLSFSVPGGRTGLVAPNGAGKSTLLRLVAGELRPT 58 
                  56777777778889999**********999987655 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00011
                  SEEEEECSTTSSHHHHHHHHCTT-----S-------- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevseklgr 136
                  + ++lvG+ G+GKStL+  + +++e   g+v ++ gr
   KIR66162.1 369 ERVALVGPNGAGKSTLLRLVGGHQEPVSGAVTRAEGR 405
                  5689**************9999988887887776554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   5.3     0.084        52      22      54 ..      35      67 ..      29     282 .. 0.85
   2 !   14.9   0.0   2.6e-05     0.016      21     139 ..     371     531 ..     365     539 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.084
      AAA_30 22 vltGpAGtGKttalkalreaweaaggrviglAp 54
                 l++p G+GK+t+l+ ++  ++  gg++ ++  
  KIR66162.1 35 GLVAPNGAGKSTLLRLVAGELRPTGGSITVAGT 67
                5899*************9999999877766554 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 2.6e-05
      AAA_30  21 avltGpAGtGKttalkalreaweaa.g..........................grviglAptgkaAkvLa..eelgieastiakllkrlk......... 81 
                 ++l+Gp G+GK+t+l+ +  + e   g                           +++++Ap+   A++++  + + +++++ +  +  l          
  KIR66162.1 371 VALVGPNGAGKSTLLRLVGGHQEPVsGavtraegrvaylsqrldlldadrtvaDNLAVFAPSRSEADRMNllARFLFRGARAHLPVGVLSggellratl 469
                 5799************99888777756888888899999988888888877777777888888888877744222234444443333333677777777 PP

      AAA_30  82 ..grarlepg.tllivDEag.mvdtkqlaallkaaek.agakvilvGDerQlasVeaGgvlrd 139
                      + ep+ +ll+ DE    +d +++a+l +a+ + +ga v++  D+r la+++  ++lr+
  KIR66162.1 470 acV-LNAEPApQLLLLDEPTnNLDLASVAQLESALLAyRGAFVVVSHDDRFLAAIGVDRWLRL 531
                 852.5677888*******661579******9999888568***************98888876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   9.6    0.0044       2.7      29     125 ..      36     187 ..      27     329 .. 0.82
   2 !   14.3   0.3   6.7e-05     0.041      23      58 ..     367     402 ..     343     505 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0044
      AAA_16  29 lsGesGvGKsslvrellralekdg.giflrgkcdqlesaipy...salaqalareellrqllde.............aesaeleawrekleeala.... 106
                 l+ + G GKs+l+r ++ +l+ +g  i+++g+   l++ +p+   +++a++l  ++++++l++                    ++w             
  KIR66162.1  36 LVAPNGAGKSTLLRLVAGELRPTGgSITVAGTLGYLPQHLPFtrhQTVARVLGVDHVVAALHAIeagdaaeehfttvG-----DDW--------Dveer 121
                 67899******************8678899999999999999995559999999888888887744444444333331.....222........13344 PP

      AAA_16 107 ...............................................avpelagaeasrllellkr 125
                                                                ++++l+g+++ rl ++l++
  KIR66162.1 122 araeldrlgltdvaldrrlgtlsggevvslglaaqllkrpdvllldePTNNLDGEARARLTAVLRS 187
                 444466666777778888888888888888888888888888888888888888888777777665 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 6.7e-05
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdggiflrg 58 
                 +pe v l+G+ G GKs+l+r +  + e   g ++r+
  KIR66162.1 367 GPERVALVGPNGAGKSTLLRLVGGHQEPVSGAVTRA 402
                 3499****************9985433332333222 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2     0.018        11      10      29 ..      36      55 ..      31      73 .. 0.88
   2 ?   -2.1   0.0         7   4.3e+03      80     103 ..     182     208 ..     151     215 .. 0.52
   3 !   12.3   0.0   0.00025      0.16       9     103 ..     372     491 ..     366     513 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.018
      AAA_22 10 vtGesGtGKTtllrrlleql 29
                ++++ G+GK+tllr ++ +l
  KIR66162.1 36 LVAPNGAGKSTLLRLVAGEL 55
                7899**********998766 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 7
      AAA_22  80 ealeqalrarav...ielliiDEaqhl 103
                 +a+ + +  +     +   ++DE++++
  KIR66162.1 182 TAVLRSWTGCLLvvsHDRALLDEMDRI 208
                 333333333333333344556666665 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00025
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee................erpevv...fvtlpsstsskdllrellralglelka....erlsseell.eale 83 
                 +++G+ G+GK+tllr +    + ++ a +                  +++v   +   + s s +d ++ l+r+l +++ a      ls  ell ++l+
  KIR66162.1 372 ALVGPNGAGKSTLLRLVGGHQEPVSGAVTraegrvaylsqrldllDADRTVadnLAVFAPSRSEADRMNLLARFLFRGARAhlpvGVLSGGELLrATLA 470
                 79**************99887766665557788888888888888444444365333333336666677777777776666666633333333335555 PP

      AAA_22  84 qalraravielliiDEaqh.l 103
                   l+a  +++ll++DE  + l
  KIR66162.1 471 CVLNAEPAPQLLLLDEPTNnL 491
                 566665557788888765556 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   5.1   7.7e-07   0.00048       2      63 ..     210     271 ..     209     281 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 7.7e-07
  ABC_tran_Xtn   2 elengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsr 63 
                    l++g+++ Y Gn +ey +  ++++e ++++ ++ ++ +k++++  ++ r++a++ +   sr
    KIR66162.1 210 ALDHGEIRWYGGNHTEYEQAVRAEREVAERQVRQAEQDVKRQKRELQQARERAARRASTASR 271
                   589***********************************************999777766666 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1     0.011         7       3      23 ..      36      56 ..      35      81 .. 0.85
   2 ?   -1.6   0.0       5.5   3.4e+03      63      74 ..     201     212 ..     194     232 .. 0.78
   3 !    7.7   0.0    0.0071       4.4       2      21 ..     372     391 ..     371     429 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.011
                EESSTTSSHHHHHHHHHHHHT CS
         AAA  3 lyGppGtGKTllakavakelg 23
                l+ p G GK++l + va el 
  KIR66162.1 36 LVAPNGAGKSTLLRLVAGELR 56
                678***************985 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 5.5
                 EEETGGGHHHHH CS
         AAA  63 fiDEidalaksr 74 
                 ++DE+d++a  +
  KIR66162.1 201 LLDEMDRIAALD 212
                 689999998765 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0071
                 EEESSTTSSHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavake 21 
                  l+Gp G GK++l + v  +
  KIR66162.1 372 ALVGPNGAGKSTLLRLVGGH 391
                 69*************99876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1      0.12        76       7      22 ..      39      54 ..      33      69 .. 0.78
   2 !   10.8   0.0   0.00065       0.4       1      21 [.     370     390 ..     370     410 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.12
                STTSSHHHHHHHHHTS CS
    MMR_HSR1  7 rpNvGKStLinaltge 22
                   +GKStL++   ge
  KIR66162.1 39 PNGAGKSTLLRLVAGE 54
                5579******998876 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00065
                 EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg 21 
                 +va+vG   +GKStL++   g
  KIR66162.1 370 RVALVGPNGAGKSTLLRLVGG 390
                 69**************86655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.063        39       7      23 ..      39      55 ..      36      65 .. 0.84
   2 ?    3.7   2.9       0.1        64      16      93 ..     154     296 ..     152     334 .. 0.59
   3 ?    9.7   0.1    0.0015      0.92       2      18 ..     371     387 ..     371     401 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.063
      AAA_33  7 lpGsGKstlaerllkkl 23
                ++G+GKstl++ ++ +l
  KIR66162.1 39 PNGAGKSTLLRLVAGEL 55
                68*********998776 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.1
      AAA_33  16 aerllkklgavllssdt.............................................................lrrrlfgtdqqsktdytrvld 53 
                 a +llk+ ++ ll+++t                                                             + r ++++++++ ++  +  +
  KIR66162.1 154 AAQLLKRPDVLLLDEPTnnldgeararltavlrswtgcllvvshdralldemdriaaldhgeirwyggnhteyeqavrAEREVAERQVRQAEQDVKRQK 252
                 566666666666666666666666666666666666666666666677777777777777777777777776666655223333344444444444455 PP

      AAA_33  54 rlyqilnelarkalsagrnvildatnls....rrerarflklar 93 
                 r  q+ +e+a++++s +   ++da++++    + +r++ +++ar
  KIR66162.1 253 RELQQARERAARRASTASRNLADAGLARivagNLKRDAQVSAAR 296
                 55555555555555555555555554443333334444444444 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0015
      AAA_33   2 vllvGlpGsGKstlaer 18 
                 v lvG++G+GKstl++ 
  KIR66162.1 371 VALVGPNGAGKSTLLRL 387
                 569***********985 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0014      0.88      25      50 ..      40      65 ..      35      68 .. 0.87
   2 ?   -3.4   0.5       7.9   4.9e+03     142     147 ..     252     257 ..     224     285 .. 0.52
   3 ?    6.9   0.1    0.0055       3.4      16      37 ..     368     389 ..     363     400 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0014
  Zeta_toxin 25 pGAGKselaellkdelerqgnvvrld 50
                 GAGKs+l++l++ el+++g+ +++ 
  KIR66162.1 40 NGAGKSTLLRLVAGELRPTGGSITVA 65
                7****************999999886 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.9
  Zeta_toxin 142 dRyeee 147
                 +R++++
  KIR66162.1 252 KRELQQ 257
                 222222 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0055
  Zeta_toxin  16 PklillgGqpGAGKselaellk 37 
                 P  + l+G  GAGKs+l++l+ 
  KIR66162.1 368 PERVALVGPNGAGKSTLLRLVG 389
                 77899*************9986 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2     0.022        14       4      28 ..      36      60 ..      33      69 .. 0.80
   2 ?    5.2   0.0     0.028        17       1      19 [.     370     388 ..     370     404 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.022
                EE--TTSSHHHHHHHHHHHH...GG CS
    NTPase_1  4 iTGppGvGKtTlvkkvlellkssgv 28
                + +p G GK+Tl++ v+ +l+  g 
  KIR66162.1 36 LVAPNGAGKSTLLRLVAGELRPTGG 60
                55799**************987764 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.028
                 EEEEE--TTSSHHHHHHHH CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkv 19 
                 +v++ Gp G GK+Tl++ v
  KIR66162.1 370 RVALVGPNGAGKSTLLRLV 388
                 58899**********9876 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.25   1.6e+02       6      20 ..      35      49 ..      31      57 .. 0.84
   2 ?   -3.1   0.0       8.7   5.4e+03      19      64 ..     154     203 ..     153     209 .. 0.73
   3 ?    7.8   0.0    0.0041       2.5       4      22 ..     370     388 ..     368     396 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.25
      AAA_24  6 liyGpsgiGKTtlak 20
                 +++p+g+GK+tl++
  KIR66162.1 35 GLVAPNGAGKSTLLR 49
                6899********987 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.7
      AAA_24  19 akelgpkplfidtekGlksldadkfpdie....swedfldevvelaaela 64 
                 a++l ++p ++ +++ +++ld+    +++    sw+ +l  v  ++a l+
  KIR66162.1 154 AAQLLKRPDVLLLDEPTNNLDGEARARLTavlrSWTGCLLVVSHDRALLD 203
                 55666888888888889999988877777888899988877777666555 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0041
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 +++++Gp+g+GK+tl++  
  KIR66162.1 370 RVALVGPNGAGKSTLLRLV 388
                 799***********99865 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2     0.046        28       3      20 ..      34      51 ..      33      64 .. 0.82
   2 ?   -3.2   0.0       8.6   5.3e+03      96     124 ..      72     101 ..      70     114 .. 0.68
   3 ?    6.8   0.0    0.0074       4.6       4      21 ..     372     389 ..     370     405 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.046
                EEEEESTTCCHHHHHHHH CS
        cobW  3 tvltGflGsGKTtLlnhl 20
                t+l+ + G+GK+tLl+ +
  KIR66162.1 34 TGLVAPNGAGKSTLLRLV 51
                6789999********866 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.6
                 HHHHHTT.SHHHHHCCCECEEEEEEETTTH CS
        cobW  96 Papvaft.eeelksdltldavvavvDaknl 124
                 P+ + ft ++++++ l +d+vva + a ++
  KIR66162.1  72 PQHLPFTrHQTVARVLGVDHVVAALHAIEA 101
                 566644548888889999999998888444 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0074
                 EEEESTTCCHHHHHHHHH CS
        cobW   4 vltGflGsGKTtLlnhll 21 
                  l+G+ G+GK+tLl+ + 
  KIR66162.1 372 ALVGPNGAGKSTLLRLVG 389
                 689***********8665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.21   1.3e+02       5      21 ..      38      54 ..      35     138 .. 0.81
   2 ?   -2.3   0.2       9.6   5.9e+03      12      12 ..     267     267 ..     222     327 .. 0.63
   3 ?    7.5   0.0     0.009       5.6       1      18 [.     371     388 ..     371     428 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.21
      AAA_18  5 GtpGvGKttlakeLskr 21
                 + G+GK+tl + ++ +
  KIR66162.1 38 APNGAGKSTLLRLVAGE 54
                578*******9998655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 9.6
      AAA_18  12 t 12 
                 +
  KIR66162.1 267 S 267
                 2 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.009
      AAA_18   1 IlltGtpGvGKttlakeL 18 
                 ++l G+ G+GK+tl + +
  KIR66162.1 371 VALVGPNGAGKSTLLRLV 388
                 6899**********9987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.24   1.5e+02       9      24 ..      40      55 ..      36      60 .. 0.85
   2 ?    7.7   0.0    0.0049         3       2      18 ..     370     386 ..     369     389 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.24
                TTTCHHHHHHHHHHHH CS
       NACHT  9 aGsGKTtLlqklalaw 24
                +G GK+tLl+ +a ++
  KIR66162.1 40 NGAGKSTLLRLVAGEL 55
                8********9988766 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0049
                 CEEEEC-TTTCHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlq 18 
                  v+l G++G GK+tLl+
  KIR66162.1 370 RVALVGPNGAGKSTLLR 386
                 689************97 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1      0.02        12      32      51 ..      30      49 ..      22      64 .. 0.84
   2 ?   -2.4   1.1       4.7   2.9e+03     107     107 ..     296     296 ..     241     351 .. 0.51
   3 ?    6.7   0.0    0.0077       4.7      34      50 ..     369     385 ..     363     445 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.02
      AAA_25 32 agelallaGapgtGKttlal 51
                 g+ + l+++ g+GK+tl+ 
  KIR66162.1 30 PGGRTGLVAPNGAGKSTLLR 49
                588899***********985 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.7
      AAA_25 107 d 107
                  
  KIR66162.1 296 R 296
                 2 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0077
      AAA_25  34 elallaGapgtGKttla 50 
                 e ++l+G+ g+GK+tl+
  KIR66162.1 369 ERVALVGPNGAGKSTLL 385
                 5789***********97 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   0.00043      0.27      47      99 ..     229     281 ..     167     285 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00043
                 SSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTCCCGGGCHHHHGGGHHHHH CS
         MCU  47 nveeeqlkkereleekleelreelepleekkeeidekAerrtrrllwagLall 99 
                  v+ e++  er++++ +++++++ ++l++++e+ +++A++ +r l+ agLa +
  KIR66162.1 229 AVRAEREVAERQVRQAEQDVKRQKRELQQARERAARRASTASRNLADAGLARI 281
                 34555667778888888888889999999999*****************9865 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       1.1   6.9e+02       8      28 ..      41      60 ..      36      68 .. 0.75
   2 ?    1.0   0.0      0.63   3.9e+02      44      87 ..     225     270 ..     185     303 .. 0.66
   3 ?    6.9   0.0    0.0099       6.1       1      29 [.     371     397 ..     371     426 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.1
                TTTHHHHHHHHHTS--S---S CS
   Dynamin_N  8 SsGKSSvlnaLlgedilprgp 28
                 +GKS++l  + ge   p+g 
  KIR66162.1 41 GAGKSTLLRLVAGEL-RPTGG 60
                58******8888875.56655 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.63
                 ---CCS...SSEEEE..T-EB--CHHHHHHHHHHHHHHHTSSSS-- CS
   Dynamin_N  44 eeaseravkeelkek..ekkledfsevreeieketekiagankgis 87 
                 e+++  +++ e+ e+  ++ ++d+++ ++e+++++e++a++ ++ s
  KIR66162.1 225 EYEQAVRAEREVAERqvRQAEQDVKRQKRELQQARERAARRASTAS 270
                 4444334444444445566777777777777777776665554444 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0099
                 EEEEEBTTTTHHHHHHHHHTS--S---SS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpn 29 
                 +a+vG   +GKS++l  + g++  p++ +
  KIR66162.1 371 VALVGPNGAGKSTLLRLVGGHQ-EPVS-G 397
                 799************7776666.5554.3 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.71   4.4e+02       8      20 ..      40      52 ..      37     106 .. 0.85
   2 ?   -2.6   6.5       9.5   5.9e+03      28      69 ..     230     269 ..     221     283 .. 0.69
   3 ?   -2.2   0.0         7   4.3e+03      34      70 ..     281     318 ..     267     328 .. 0.58
   4 ?   10.8   0.0   0.00068      0.42       1      24 [.     370     398 ..     370     444 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.71
      AAA_28  8 estGKTtlleaLa 20
                 ++GK+tll+  a
  KIR66162.1 40 NGAGKSTLLRLVA 52
                699******9887 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9.5
      AAA_28  28 pEaareileeklakgedalpwvedllafaervleeqleeeaa 69 
                  +a re+ e + ++ e++ +  +++ +++++++++++++ +a
  KIR66162.1 230 VRAEREVAERQVRQAEQDVK--RQKRELQQARERAARRASTA 269
                 56678889888888888655..57888888877776654433 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 7
      AAA_28  34 ileeklakgedalpwv.edllafaervleeqleeeaaa 70 
                 i+  +l+++ + +++  +d+ a + +  +++l ++ aa
  KIR66162.1 281 IVAGNLKRDAQVSAARsNDVHAARLGAAQARLDQASAA 318
                 44455555555555555566666666666666555444 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00068
      AAA_28   1 kivitGgestGKTtlleaLaar.....gy 24 
                 +++++G+ ++GK+tll+    +     g 
  KIR66162.1 370 RVALVGPNGAGKSTLLRLVGGHqepvsGA 398
                 799**************999773344344 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.081        50      32      44 ..      37      49 ..      21      54 .. 0.71
   2 ?   -2.5   2.7       5.1   3.2e+03     177     201 ..     235     259 ..     218     273 .. 0.53
   3 ?    8.2   0.0    0.0027       1.7      29      44 ..     371     386 ..     355     390 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.081
      AAA_27 32 yGpNEAGKstalr 44
                + pN AGKst+lr
  KIR66162.1 37 VAPNGAGKSTLLR 49
                56*********98 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.1
      AAA_27 177 kskkrainealeeleeakkelreaq 201
                 + ++r++++a+++++++k+el++a 
  KIR66162.1 235 EVAERQVRQAEQDVKRQKRELQQAR 259
                 2333444455555554444444443 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0027
      AAA_27  29 hliyGpNEAGKstalr 44 
                   ++GpN AGKst+lr
  KIR66162.1 371 VALVGPNGAGKSTLLR 386
                 4568*********998 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.071        44       6      22 ..      39      55 ..      35      86 .. 0.91
   2 ?    0.7   1.1       0.6   3.7e+02     140     176 ..     258     294 ..     255     306 .. 0.84
   3 ?    7.0   0.0    0.0069       4.3       1      21 [.     371     391 ..     371     435 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.071
                    STTSSHHHHHHHHHHHH CS
  Cytidylate_kin  6 PagsGKssvaralaekl 22
                    P g+GKs++ r++a +l
      KIR66162.1 39 PNGAGKSTLLRLVAGEL 55
                    99************988 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.6
                     HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHC CS
  Cytidylate_kin 140 veeRakRRlkqlkakgtsvsleellaeikeRDklDke 176
                     ++eRa+RR++  +++  +  l++++a   +RD++ ++
      KIR66162.1 258 ARERAARRASTASRNLADAGLARIVAGNLKRDAQVSA 294
                     679********9999999********99999987554 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0069
                     EEEE-STTSSHHHHHHHHHHH CS
  Cytidylate_kin   1 iaiDGPagsGKssvaralaek 21 
                     +a+ GP g+GKs++ r+++ +
      KIR66162.1 371 VALVGPNGAGKSTLLRLVGGH 391
                     6899***********999754 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.7    0.0015      0.95      11      57 ..     224     270 ..     221     283 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0015
                 HHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHH CS
        GrpE  11 edeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeak 57 
                 ++ e++ ++e e +e++v++++++++r++ e++++r+r++++++ a+
  KIR66162.1 224 TEYEQAVRAEREVAERQVRQAEQDVKRQKRELQQARERAARRASTAS 270
                 566889999999****************************9988765 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.7     0.002       1.2      58     113 ..     216     287 ..     198     320 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.002
       Atg14  58 ledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk................k 113
                  ++   n++++ +  +++++  ++++++ +++++++k+e+++++++ a++ ++ +                k
  KIR66162.1 216 IRWYGGNHTEYEQAVRAEREVAERQVRQAEQDVKRQKRELQQARERAARRASTASrnladaglarivagnlK 287
                 567778999999**********************************99999998855555555555555441 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.014       8.7      18      37 ..      32      51 ..      29      52 .. 0.90
   2 ?   -2.2  13.8      0.88   5.5e+02     600     689 ..     226     315 ..     221     328 .. 0.69
   3 ?    8.9   0.1   0.00039      0.24      17      37 ..     368     388 ..     357     389 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.014
     DUF3584 18 ghtnieGtNaaGKTtLlrLi 37
                g+t ++  N+aGK tLlrL+
  KIR66162.1 32 GRTGLVAPNGAGKSTLLRLV 51
                88999999***********8 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.88
     DUF3584 600 seeeLrerlqaleealqsaeakqkqaeeelkqlnaeleeakravaeaatalknardtlerlqnekesekdklekaiaerkqqaeeqlqkl 689
                  e+++r++++++e ++ +ae+  k++  el+q+++ +  +   +++  + +  ar   + l+   +  + + + + a+r  +a+++l++ 
  KIR66162.1 226 YEQAVRAEREVAERQVRQAEQDVKRQKRELQQARERAARRASTASRNLADAGLARIVAGNLKRDAQVSAARSNDVHAARLGAAQARLDQA 315
                 466777777777777777777777777777777777777777777777777777777777777777777777777777777777766664 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00039
     DUF3584  17 dghtnieGtNaaGKTtLlrLi 37 
                  +++ ++G N+aGK tLlrL+
  KIR66162.1 368 PERVALVGPNGAGKSTLLRLV 388
                 46999***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1201  (0.0669864); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 3670.23
//
Query:       KIR66163.1  [L=141]
Description: hypothetical protein TK50_13240 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1056.74
//
Query:       KIR66164.1  [L=133]
Description: hypothetical protein TK50_13245 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.057   13.5   0.9       0.15   12.1   0.9    1.8  1  DUF3592   Protein of unknown function (DUF3592)


Domain annotation for each model (and alignments):
>> DUF3592  Protein of unknown function (DUF3592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.9   8.3e-06      0.15      90     113 ..     105     127 ..      24     131 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.3e-06
     DUF3592  90 aqlyraGnavqvyynPsnPtqavl 113
                  q +r+G +v v+y+P++P+  ++
  KIR66164.1 105 GQ-LRPGGTVAVRYSPADPNSVAV 127
                 34.9***************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 962.72
//
Query:       KIR66165.1  [L=415]
Description: hypothetical protein TK50_13250 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-13   50.0   0.0    6.8e-13   48.8   0.0    1.5  1  Peptidase_M48  Peptidase family M48


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   3.8e-17   6.8e-13       3     193 ..     130     374 ..     128     376 .. 0.79

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 3.8e-17
                    -SSHHHHHHHHHHHHTT-..-EEEEEEE-GGGT-EEEEESSS-E.EEEEE.HHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48   3 reaelkevveelakeaglpkpltkvyvvnspkrNAFalgggknk.rivlt.dgLlkqllseeelaaVlGHElGHikhrhsvvslivsllasillll 96 
                     ++el++ v+e+a++ag   p ++v  ++ + +NA + + g+++  + +   +L   +l ++    Vl+HElGH+++++   ++  +l a+ + + 
     KIR66165.1 130 AAPELHRLVREVADAAGT--PVPDVICADLS-INAGVAQLGWRQrPVLVIgIPLW-VMLPRAARVSVLAHELGHLANGDP-LRVRWTLPARTFGTR 220
                    5789**************..99**9999999.7***********64444414555.9***********************.789999999999999 PP

                    HHHHHTT-SHHHHHTT--S---HHHHHHHHHHTT.........................HHHHHHHHHHHHHHHHTTT.HHHHHHHHHH.HHHHTT CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
  Peptidase_M48  97 glallisraeedaagafldalavliglliillfl.........................alSRkrEyqADeagvellkrakdlvralik.lakdle 166
                    ++a++++r+  ++a  ++d+la   g l +ll +                         + SR+ Ey+AD ++ +++  a  l ++    la++  
     KIR66165.1 221 AVAATGGRNPWRRALDTADSLAERQGGLVVLLGMavhgtialvnvvgatvqllvdsvamPDSRRAEYRADLVARRVAGTAPFLRSSETVlLADRIW 316
                    999999998776666666665555555555544456679*******************999****************9777776654440444444 PP

                    -..............-S---HHHH........................HHS-SS--HHHHHHHHH CS
                    x..............xxxxxxxxx........................xxxxxxxxxxxxxxxxx RF
  Peptidase_M48 167 r..............qdvsaslrs........................ellstHPplleRiqalk 193
                    r              +       +                        +l stHP+  +R++ ++
     KIR66165.1 317 RdlwhlapridgeqlE-------ElaaearqrlavqlplarqvsrratDLWSTHPSEDQRMRLIE 374
                    4666676666666552.......0444445578888888888888888************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2963.94
//
Query:       KIR66166.1  [L=302]
Description: hypothetical protein TK50_13255 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-10   39.4  30.6    2.6e-07   30.4  21.5    3.2  2  DUF2336   Uncharacterised protein conserved in bacteria (DUF2
    1.9e-09   37.3  72.7    0.00053   20.2   0.5    9.4 10  LRV       Leucine rich repeat variant
     0.0021   18.4  30.5      0.098   13.1   4.0    6.8  4  HEAT_2    HEAT repeats
  ------ inclusion threshold ------
       0.11   12.8  26.5        5.9    7.4   0.0    8.2  9  HEAT      HEAT repeat
       0.12   13.0   1.0         15    6.3   0.0    3.3  3  RHH_6     Ribbon-helix-helix domain


Domain annotation for each model (and alignments):
>> DUF2336  Uncharacterised protein conserved in bacteria (DUF2336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4  21.5   7.3e-11   2.6e-07       2     164 ..      30     197 ..      30     218 .. 0.83
   2 !   10.7   2.0   7.2e-05      0.26      11      55 ..     220     264 ..     213     272 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 7.3e-11
     DUF2336   2 AapvLerSpvLtdedLvdiartgsqahllaIAsRpdlsaaVadalaergdeevvrallaNpgAelseeslerlveragedealreaLlrRpdLpaavae 100
                 A+  L+++p  ++ +L+d+a++ s+  ++a+A+R d +a+    la+  d++v +a+++Np+A+   + l rlv+ a  d+ +r a++  p  +++v++
  KIR66166.1  30 ARLALAQHPETPQLTLIDLAADPSPLVRRAVAGRTDAPAQALRPLARDHDRQVREAVARNPSAS--VGNLVRLVKDA--DRWVRWAVAGNPACDESVRQ 124
                 56679999999999*************************************************5..68899999987..566777789*********** PP

     DUF2336 101 rLlsrvsealrdrllarfaldaaaaeelvaeareratlslaea..deeeakrlva...hlrrngrl.....tea 164
                  +++  + +lr  l ++++l+++ a++lv +++ ++ ++la    d e +++l+a   + r+++ l     t++
  KIR66166.1 125 VMAQAHDKELRGLLAESRELEPDLAARLVDDVSPEVRERLATHthDPEVITALLAdrtA-RVRRGLarnprTST 197
                 *******************************************8777777888776632.33333335444444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 7.2e-05
     DUF2336  11 vLtdedLvdiartgsqahllaIAsRpdlsaaVadalaergdeevv 55 
                  Lt++dL +++ ++s + ++a+A  + +++ + +al +  de v+
  KIR66166.1 220 ELTEADLRHLVDDRSVQVRMAVATSELVPPHIRQALRDDPDEMVA 264
                 69*********************************9555544443 PP

>> LRV  Leucine rich repeat variant
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   1.4   2.5e-05     0.089       2      26 .]      29      53 ..      28      53 .. 0.94
   2 !   17.5   6.2   1.1e-06    0.0039       2      25 ..      55      78 ..      54      79 .. 0.93
   3 !   20.2   0.5   1.5e-07   0.00053       1      26 []      80     105 ..      80     105 .. 0.95
   4 ?    4.0   0.1     0.022        79       1      15 [.     106     120 ..     106     131 .. 0.81
   5 ?    0.1   1.0      0.39   1.4e+03       4      24 ..     135     155 ..     133     157 .. 0.82
   6 ?    2.3   0.6     0.078   2.8e+02      14      25 ..     157     171 ..     152     172 .. 0.72
   7 ?    2.3   1.0     0.075   2.7e+02       1      24 [.     158     180 ..     158     181 .. 0.70
   8 !   16.7   3.3   1.9e-06    0.0068       1      25 [.     183     207 ..     183     208 .. 0.96
   9 ?    0.6   3.9      0.26   9.4e+02       2      25 ..     210     233 ..     209     234 .. 0.92
  10 ?    3.4   1.2     0.033   1.2e+02       2      26 .]     236     260 ..     235     260 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.5e-05
         LRV  2 eVRaaVArrPdlPpeaLerLahDPd 26
                e R+a+A++P +P  +L  La+DP+
  KIR66166.1 29 EARLALAQHPETPQLTLIDLAADPS 53
                78*********************96 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 1.1e-06
         LRV  2 eVRaaVArrPdlPpeaLerLahDP 25
                 VR+aVA r d+P+ aL+ La+D 
  KIR66166.1 55 LVRRAVAGRTDAPAQALRPLARDH 78
                7*********************95 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 1.5e-07
         LRV   1 reVRaaVArrPdlPpeaLerLahDPd 26 
                 r+VR+aVAr+P+++++ L+rL+ D d
  KIR66166.1  80 RQVREAVARNPSASVGNLVRLVKDAD 105
                 68********************9987 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.022
         LRV   1 reVRaaVArrPdlPp 15 
                 r+VR aVA +P+++ 
  KIR66166.1 106 RWVRWAVAGNPACDE 120
                 68*********9876 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.39
         LRV   4 RaaVArrPdlPpeaLerLahD 24 
                 R  +A+   l p+   rL++D
  KIR66166.1 135 RGLLAESRELEPDLAARLVDD 155
                 66778888899*******999 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.078
         LRV  14 PpeaLerLah...DP 25 
                 +pe++erLa+   DP
  KIR66166.1 157 SPEVRERLAThthDP 171
                 788888888755566 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.075
         LRV   1 reVRaaVArrPdlPpeaLerLahD 24 
                 +eVR+ +A++   +pe++ +L++D
  KIR66166.1 158 PEVRERLATH-THDPEVITALLAD 180
                 5788888888.4467777777777 PP

  == domain 8  score: 16.7 bits;  conditional E-value: 1.9e-06
         LRV   1 reVRaaVArrPdlPpeaLerLahDP 25 
                 ++VR+ +Ar+P+++ + +++La+DP
  KIR66166.1 183 ARVRRGLARNPRTSTAQRGALARDP 207
                 58**********************9 PP

  == domain 9  score: 0.6 bits;  conditional E-value: 0.26
         LRV   2 eVRaaVArrPdlPpeaLerLahDP 25 
                 +VR+a+++   l  + L+ L++D 
  KIR66166.1 210 DVRVALVLAVELTEADLRHLVDDR 233
                 8*********************96 PP

  == domain 10  score: 3.4 bits;  conditional E-value: 0.033
         LRV   2 eVRaaVArrPdlPpeaLerLahDPd 26 
                 +VR aVA+    Pp  + +L +DPd
  KIR66166.1 236 QVRMAVATSELVPPHIRQALRDDPD 260
                 699999999999999*********9 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   4.0   2.7e-05     0.098      28      85 ..      37      88 ..      18      89 .. 0.72
   2 !    8.2   2.7   0.00087       3.1      30      82 ..      91     163 ..      87     169 .. 0.60
   3 ?   -1.7   6.1       1.1   3.9e+03      66      83 ..     147     164 ..     115     220 .. 0.70
   4 ?   -5.6  13.3         5   1.8e+04      41      83 ..     205     267 ..     145     269 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.7e-05
      HEAT_2 28 gnpealpaLvellededpavRraaaeaLgaigdpealpaLkellddddddvvReaAae 85
                ++++ + +L++l+ d++p vRra+a   g+ + p  ++aL+ l++ d+d+ vRea+a+
  KIR66166.1 37 HPETPQLTLIDLAADPSPLVRRAVA---GRTDAP--AQALRPLAR-DHDRQVREAVAR 88
                3345588899999999999999987...555555..788888765.688888888765 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00087
      HEAT_2  30 pealpaLvellededpavRraaa......eaLgai..........g....dpealpaLkellddddddvvRea 82 
                   ++  Lv+l++d+d++vR+a+a      e+  ++          g    + e  p L+++l dd +++vRe+
  KIR66166.1  91 SASVGNLVRLVKDADRWVRWAVAgnpacdESVRQVmaqahdkelrGllaeSRELEPDLAARLVDDVSPEVRER 163
                 355999****************944433333333333333333331322234445777777777777777766 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.1
      HEAT_2  66 aLkellddddddvvReaA 83 
                  L+++l dd +++vRe+ 
  KIR66166.1 147 DLAARLVDDVSPEVRERL 164
                 344444444444444432 PP

  == domain 4  score: -5.6 bits;  conditional E-value: 5
      HEAT_2  41 ededpavRraaaeaLg...................aig.dpealpaLkellddddddvvReaA 83 
                 +d+ ++vR a + a                     a++ ++ + p+ +++l+dd+d+ v  aA
  KIR66166.1 205 RDPVADVRVALVLAVElteadlrhlvddrsvqvrmAVAtSELVPPHIRQALRDDPDEMVADAA 267
                 555555555555555322222222222222211111121355668889999999998888776 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0017       5.9       5      21 ..      45      61 ..      43      62 .. 0.88
   2 ?    4.9   0.2     0.011        38       5      22 ..      71      88 ..      69      89 .. 0.83
   3 ?    1.3   0.1      0.16   5.7e+02       5      21 ..      97     113 ..      94     115 .. 0.85
   4 ?   -2.4   0.1       2.3   8.3e+03      12      22 ..     118     128 ..     117     129 .. 0.72
   5 ?    2.8   0.1      0.05   1.8e+02       7      19 ..     151     163 ..     146     166 .. 0.76
   6 ?    0.2   0.0      0.34   1.2e+03       5      18 ..     174     187 ..     171     192 .. 0.77
   7 ?    3.5   0.1     0.029     1e+02       8      23 ..     203     218 ..     201     220 .. 0.84
   8 ?    3.1   0.1     0.041   1.5e+02       7      22 ..     228     243 ..     226     244 .. 0.80
   9 ?    2.2   0.1     0.079   2.8e+02       3      20 ..     249     267 ..     246     267 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0017
                HHHHHT-SSHHHHHHHH CS
        HEAT  5 llkllsDpspeVReaAa 21
                l+ l  Dpsp VR+a+a
  KIR66166.1 45 LIDLAADPSPLVRRAVA 61
                778889*********97 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.011
                HHHHHT-SSHHHHHHHHH CS
        HEAT  5 llkllsDpspeVReaAak 22
                l  l +D + +VRea+a+
  KIR66166.1 71 LRPLARDHDRQVREAVAR 88
                556779**********97 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.16
                 HHHHHT-SSHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAa 21 
                 l++l +D +  VR a+a
  KIR66166.1  97 LVRLVKDADRWVRWAVA 113
                 78889********9998 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 2.3
                 SSHHHHHHHHH CS
        HEAT  12 pspeVReaAak 22 
                 ++ +VR+  a+
  KIR66166.1 118 CDESVRQVMAQ 128
                 67889987776 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.05
                 HHHT-SSHHHHHH CS
        HEAT   7 kllsDpspeVRea 19 
                 +l  D speVRe 
  KIR66166.1 151 RLVDDVSPEVRER 163
                 44599******96 PP

  == domain 6  score: 0.2 bits;  conditional E-value: 0.34
                 HHHHHT-SSHHHHH CS
        HEAT   5 llkllsDpspeVRe 18 
                 +  ll D  ++VR+
  KIR66166.1 174 ITALLADRTARVRR 187
                 56678*******97 PP

  == domain 7  score: 3.5 bits;  conditional E-value: 0.029
                 HHT-SSHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAaka 23 
                 l +Dp ++VR a ++a
  KIR66166.1 203 LARDPVADVRVALVLA 218
                 459*********9987 PP

  == domain 8  score: 3.1 bits;  conditional E-value: 0.041
                 HHHT-SSHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAak 22 
                 +l  D s +VR+a+a 
  KIR66166.1 228 HLVDDRSVQVRMAVAT 243
                 45599********985 PP

  == domain 9  score: 2.2 bits;  conditional E-value: 0.079
                 HHHHHHH.T-SSHHHHHHH CS
        HEAT   3 Plllkll.sDpspeVReaA 20 
                 P++ ++l  Dp+  V +aA
  KIR66166.1 249 PHIRQALrDDPDEMVADAA 267
                 6799999788****99887 PP

>> RHH_6  Ribbon-helix-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.036   1.3e+02      11      42 ..      76     107 ..      73     108 .. 0.73
   2 ?    6.3   0.0    0.0042        15       3      24 ..     108     129 ..     106     186 .. 0.74
   3 ?    0.4   0.1      0.28     1e+03      58      71 ..     220     233 ..     202     269 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.036
       RHH_6  11 petdqavrafLAsqGggrkGdLSrfieeAVra 42 
                 ++ d  vr  +A++     G+L r++++A r+
  KIR66166.1  76 RDHDRQVREAVARNPSASVGNLVRLVKDADRW 107
                 67778888888888788888888888887665 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0042
       RHH_6   3 vrwnvavspetdqavrafLAsq 24 
                 vrw va  p  d++vr  +A+ 
  KIR66166.1 108 VRWAVAGNPACDESVRQVMAQA 129
                 8*****************9986 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.28
       RHH_6  58 dvsedelsdlidea 71 
                 +++e++l +l+d+ 
  KIR66166.1 220 ELTEADLRHLVDDR 233
                 56677777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2022.80
//
Query:       KIR66167.1  [L=150]
Description: protein phosphatase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1221.10
//
Query:       KIR66168.1  [L=314]
Description: hypothetical protein TK50_13265 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-43  146.1   0.0    1.6e-42  144.8   0.0    1.4  1  GNAT_C    GNAT-like C-terminal domain
    5.5e-20   71.0   0.6    1.1e-19   70.0   0.6    1.5  1  DUF5596   Domain of unknown function (DUF5596)


Domain annotation for each model (and alignments):
>> GNAT_C  GNAT-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.8   0.0   1.8e-46   1.6e-42      24     153 ..     179     311 ..     172     312 .. 0.94

  Alignments for each domain:
  == domain 1  score: 144.8 bits;  conditional E-value: 1.8e-46
      GNAT_C  24 lleegekvlsvHIPeggpLtpeaveeSlaqakeffkkhfperevklvvceSWLLdpqlkellpedSnIvrFqrrFelvpvee....eedsqilefvfgl 118
                 + ++g+ ++ +HIP+ gpLtpeav +Sl++a++ff++hfp++++ ++ c SWLLdpql+e+lpe+SnIvrFqrrFel p+ee    + d ++l+fvf++
  KIR66168.1 179 QHHRGDGAIGLHIPDSGPLTPEAVAASLDEARAFFPRHFPDERYTAFACGSWLLDPQLREYLPESSNIVRFQRRFELEPYEEpeglDADVEVLRFVFRT 277
                 34567899************************************************************************9988888999********* PP

      GNAT_C 119 rteadlaklpedtsLqravkeyLsaggelgsggGv 153
                   +++l++lp++t+Lqrav+++L ag++++   G 
  KIR66168.1 278 L-TTPLDRLPRRTALQRAVVDHLTAGRHWQWRQGR 311
                 *.****************************99997 PP

>> DUF5596  Domain of unknown function (DUF5596)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.6   1.2e-23   1.1e-19       3      79 ..      91     167 ..      89     168 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 1.2e-23
     DUF5596   3 akrawpqlpeklgedeelfllyallaaapdvleayrkrGIseeifwaTladlgrfvaehrrkhGrygldrafWltrh 79 
                 + +++p lp++ g+++++++ ya+la+++ v+ ++r++GI ++++w Tladlgr++a+ rr+ G+++   ++Wlt+h
  KIR66168.1  91 WLSPGPALPRDRGPAWRHLYGYAYLALVDVVRGYHRDHGIADAVSWTTLADLGRNLAVDRRMRGEGWPVMQSWLTLH 167
                 567899**********************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2397.63
//
Query:       KIR66169.1  [L=338]
Description: luciferase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-27   95.7   6.8    5.8e-27   94.9   6.8    1.3  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   6.8   3.2e-31   5.8e-27      24     246 ..      29     260 ..      11     303 .. 0.73

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 3.2e-31
  Bac_luciferase  24 ylvelaraaEelGfdavwvaehhggpggaldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhlsgGRfglglgtggpaveerrf. 117
                      ++ l+++ E+lGfd++wv  +h+  +g ++++++laa+ ++T+ri+lgtav pl + +P++lA++ at+d lsgGR+  g+  g p++  r   
      KIR66169.1  29 ATLSLIELGEQLGFDSAWVRHRHLQ-FGISSPVAVLAAATQRTRRIELGTAVIPLGWENPLRLAEDLATVDVLSGGRLNPGVSVGPPMHYDRVRh 122
                     567899999**************95.6669***************************************************99999998744433 PP

  Bac_luciferase 118 ......GvdhderyarlrEfvevlrrlwrgeevdfeGef.fsvkgalllprpgqgpiPvyvaaaspaglelaarhadglllag.....eppeeaa 200
                           G+  d  + r r  ++++r+      +d +G   f +   +++p ++   + ++ +a+s +++++a++ +  ll+ +     e  +   
      KIR66169.1 123 alypdtGDAEDFGHTRVRRLLDLVRGEQ---ASDLDGVEgFEAYSRRVQPYSPGLIHRMWYGAGSLRSARWAGEQGMNLLTSSvvkaeEATDFDD 214
                     4445556699999999999999999877...346666554677777778877544377*************************755433333334 PP

  Bac_luciferase 201 elierlragaaeagrdpadirvgisltvivadteeeAraea..ralia 246
                      +++++ra  a + ++p ++rv  +l vi + +++ A+++a  +++++
      KIR66169.1 215 IQLAHIRAYRAHHPAGP-AARVSQGLVVIPT-DSATAEQRAryEEYVR 260
                     55666665444444433.5666666666655.5666666653455552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2565.86
//
Query:       KIR66170.1  [L=322]
Description: aldo/keto reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-52  179.1   0.0    1.4e-52  178.8   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.8   0.0   7.6e-57   1.4e-52       2     283 ..      16     308 ..      15     314 .. 0.96

  Alignments for each domain:
  == domain 1  score: 178.8 bits;  conditional E-value: 7.6e-57
                   EEEE-SSS-ST..TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.....................--SSST CS
  Aldo_ket_red   2 lglGtwqlgsk.eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv.....................dlrdae 76 
                   +g+G++ +g+  +++++++a +++++a +aGi+++DtA+ Yg g se+ lG al     +r e+ ++tKv                        d++
    KIR66170.1  16 VGFGAAGIGNLyRAVDDDTARRAVEAAWQAGIRYYDTAPHYGLGLSERRLGAALTG--RPRAEFTVSTKVgrilvpspqtahlrddaggfdVPADHA 110
                   89******************************************************..******************************998888999 PP

                   TSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-..HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHH CS
  Aldo_ket_red  77 iksglskeniresleeslkrLgtdyvDllllHrpdpslp.sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllrelee 172
                    ++++s++ +r+sle sl rLg+d+vD++l+H+pd  +   + e++ al+el+++G + aiGv   ++++le+  ++  +++v++  +y+ll++ ++
    KIR66170.1 111 RRWDFSADGVRRSLESSLARLGLDRVDVVLIHDPDEHWRqAVDEAYPALHELRDAGVVGAIGVGMNQWQMLERFVTDTDIDAVMLAGRYTLLDQSAA 207
                   99************************************9889******************************************************* PP

                   TTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHH CS
  Aldo_ket_red 173 egllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieq 269
                   + ll+ c++  v++ a++++ +G+l    ++++++ d +p +d         ++ +a ++ +++++hgvsl q+a++++  +pav++v++ga n+eq
    KIR66170.1 208 RTLLPRCRERSVGVLAAGVFNSGILA--TEPPGRTYDYGPVPD--------ATYARAVRIAQVCRTHGVSLPQAAMAFVARHPAVVSVLFGAGNAEQ 294
                   *************************9..667777778889998........799******************************************* PP

                   HHHHHGGGG----H CS
  Aldo_ket_red 270 lednldalelklse 283
                   ++ n++  +++ ++
    KIR66170.1 295 VDRNVQLAATPVPD 308
                   ******99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2660.87
//
Query:       KIR66171.1  [L=592]
Description: hypothetical protein TK50_13290 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-06   27.0   0.2    4.6e-06   27.0   0.2    4.5  4  FtsX      FtsX-like permease family


Domain annotation for each model (and alignments):
>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.6       0.8   1.4e+04      25      32 ..     265     272 ..     255     282 .. 0.45
   2 !   27.0   0.2   2.5e-10   4.6e-06       1      94 [.     288     380 ..     288     382 .. 0.92
   3 ?   -0.2   1.3      0.08   1.4e+03      26      46 ..     471     491 ..     466     498 .. 0.71
   4 !    9.1   5.8    0.0001       1.8       4      81 ..     500     576 ..     497     591 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.8
        FtsX  25 illitlva 32 
                 ++l+t++a
  KIR66171.1 265 SWLLTALA 272
                 22222222 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 2.5e-10
        FtsX   1 kreigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiskilkk 94 
                 +r +g+l+a+G+  + v+ + l e l+++l a+  Gl++g+laa +l d +   ++    ++   l +v+++ +l+l +a +a+l+++++++ +
  KIR66171.1 288 RRRVGLLKAVGAGPAMVAAVHLAEHLVVGLAAAGTGLAAGWLAAPALTDPGAGLLG-ATGTPPPGLRAVVAGTALALAIAAAATLAPVLRAATT 380
                 6889*******************************************999999987.888888889999999999999999******9998765 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.08
        FtsX  26 llitlvalviGlglgllaaql 46 
                 ll++ v +v+Gl+++++ ++ 
  KIR66171.1 471 LLVIGVLCVLGLVNAIVSTWT 491
                 566667777788888887775 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.0001
        FtsX   4 igilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllal 81 
                 +++ r+lG++ +qv  ++ +  ll + ++ ++G+ +g+ +  ++s++ + +    +  + +    +l++++l+ + al
  KIR66171.1 500 LAVARTLGATPAQVTMGMAVAQLLPATLGVAVGVPAGIGLYLVVSAGEQRY-APVSWLLAMACAVLLAVAALAAVPAL 576
                 5799*****************************888888855544443333.22333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 3647.00
//
Query:       KIR66172.1  [L=179]
Description: transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-17   61.0   0.0    1.3e-16   60.3   0.0    1.3  1  PadR             Transcriptional regulator PadR-like family
    0.00072   18.6   0.8    0.00094   18.2   0.8    1.1  1  DUF3375          Protein of unknown function (DUF3375)
  ------ inclusion threshold ------
       0.01   16.5   1.9       0.02   15.6   1.9    1.4  1  Vir_act_alpha_C  Virulence activator alpha C-term
      0.013   16.1   0.0      0.022   15.4   0.0    1.3  1  RTP              Replication terminator protein
      0.019   15.1   0.3      0.044   13.9   0.1    1.6  2  Replic_Relax     Replication-relaxation
       0.05   13.8   0.0      0.092   12.9   0.0    1.6  1  HTH_34           Winged helix DNA-binding domain
      0.062   13.4   0.0        1.7    8.8   0.0    2.9  2  Mrr_N            Mrr N-terminal domain
       0.11   12.4   0.2       0.51   10.3   0.0    2.1  3  TrmB             Sugar-specific transcriptional regulator Trm
       0.18   12.1   0.0       0.62   10.4   0.0    1.8  2  DUF2513          Hypothetical protein (DUF2513)


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   6.6e-20   1.3e-16       1      74 [.       5      80 ..       5      81 .. 0.94

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 6.6e-20
                HHHHHCCS-EEHHHHHHHHHCCST..T-CCTTHHHHHHHHHHHHHTTSEEEEEE-S.TSSS-EEEEEESHCCCHHHH CS
        PadR  1 iLalleeqpsyGyeiikeleelse..gllelseGslYpaLkrLekeglvesewees.gegpprkyYrlTdaGrrela 74
                +La+l+++p yGy+++++l++ ++  g +++++G++Y +L+rL k glv+s+++e   ++p r++Y+lT+aG++++a
  KIR66172.1  5 VLAMLAKEPAYGYDLRSRLRAALGplG-ETMNAGQIYVTLTRLAKAGLVTSQRVEGlPDRPDRRVYALTPAGQQRVA 80
                89********************98434.7899***********************9*****************9976 PP

>> DUF3375  Protein of unknown function (DUF3375)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.8   4.7e-07   0.00094      40     156 ..      19     136 ..      14     145 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4.7e-07
     DUF3375  40 lheaLedeLeelreeeeeealpksAreylrdWvkegWLrrrydegs....deevyelTaaa.ekAlefverlserravvTeSrlrtilealeqlaeete 133
                 l+++L ++L  l e+ ++     +    l++++k+g ++ +  eg     d+ vy lT+a  +++ ++++++  +r  +Te +l+ +++a ++la+ ++
  KIR66172.1  19 LRSRLRAALGPLGETMNA----GQIYVTLTRLAKAGLVTSQRVEGLpdrpDRRVYALTPAGqQRVAAWLAEVHWPRPDLTEFHLKLVAAAAARLADPVD 113
                 555666666666642211....1122335566667777665444434444********997257999******************************** PP

     DUF3375 134 pDpeeRlaeLeaeiaeidaeidr 156
                    ++R++ L++ +++ +a +dr
  KIR66172.1 114 LVDAQRREVLRRLRDAQRAALDR 136
                 9999999*999988887777776 PP

>> Vir_act_alpha_C  Virulence activator alpha C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   1.9     1e-05      0.02       4      74 ..      95     165 ..      94     167 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1e-05
  Vir_act_alpha_C   4 elllKlfaaavldpealieeLerrreeheekLaeyeeieerl..eeargqylvLrrgiryeeawieWcdeale 74 
                      e+ lKl aaa+   ++ ++++ ++r+e  ++L++ ++    l  + +    l L++ + + +a +eW++ + +
       KIR66172.1  95 EFHLKLVAAAAARLADPVDLVDAQRREVLRRLRDAQRAA--LdrAVDPVVGLLLEGVVLRLRADLEWLEACER 165
                      89*******************************999332..2324499999******************9976 PP

>> RTP  Replication terminator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   1.1e-05     0.022      14      89 ..       5      79 ..       3      88 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
                HHHHHHTT-EBCTCHHHHHHHHHTTTT----HHHHHHHHHHHHHTTSEEEEEEEBTSSSSSEEEEEEESS..HHHH CS
         RTP 14 litlvekkklyglklldelkkeFkelgykPnhseiyralhelvedgilkrrkelkekaklqevviYsltdeGkeka 89
                ++ +++k++ yg+ l  +l++   +lg + n  +iy +l  l + g+++ ++      ++ +  +Y lt +G++++
  KIR66172.1  5 VLAMLAKEPAYGYDLRSRLRAALGPLGETMNAGQIYVTLTRLAKAGLVTSQRVEG-LPDRPDRRVYALTPAGQQRV 79
                58899******************************************99776544.34444445577777776665 PP

>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.2e-05     0.044      25      71 ..      33      81 ..      20      99 .. 0.80
   2 ?   -1.7   0.0       1.3   2.5e+03      24      39 ..     119     133 ..      93     145 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.2e-05
  Replic_Relax 25 a....tarrrLarLrelgllsrlrkrvggarggsepyvYaLtpkGarllaa 71
                  +    +++  L+rL++ gl+++  +rv+g  +  ++ vYaLtp+G++ +aa
    KIR66172.1 33 TmnagQIYVTLTRLAKAGLVTS--QRVEGLPDRPDRRVYALTPAGQQRVAA 81
                  334467999************9..7778999999************98854 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.3
  Replic_Relax  24 ratarrrLarLrelgl 39 
                   r+++ rrL++  ++ +
    KIR66172.1 119 RREVLRRLRDA-QRAA 133
                   22244444443.3344 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.6e-05     0.092      26      75 ..      34      85 ..       4      88 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.6e-05
      HTH_34 26 atdgnLsvhlkkLekagYievdke..fkgkkprtllriTpeGreafkkyvka 75
                +++g+++v l+ L kag ++ +    + ++  r ++ +Tp+G+++ ++ +++
  KIR66172.1 34 MNAGQIYVTLTRLAKAGLVTSQRVegLPDRPDRRVYALTPAGQQRVAAWLAE 85
                689****************99875126788899**********998877765 PP

>> Mrr_N  Mrr N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00085       1.7      64      84 ..      58      78 ..      15      81 .. 0.80
   2 ?   -0.7   0.0      0.81   1.6e+03      24      43 ..     105     124 ..      97     137 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00085
       Mrr_N 64 agllespkrgvwkiTekGrev 84
                +gl ++p+r v+ +T++G++ 
  KIR66172.1 58 EGLPDRPDRRVYALTPAGQQR 78
                56667788**********986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.81
       Mrr_N  24 rervaerfglseeeraellp 43 
                  +r+a+ + l + +r+e+l 
  KIR66172.1 105 AARLADPVDLVDAQRREVLR 124
                 56677777777777777663 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.5     5e+03      15      31 ..       6      22 ..       3      24 .. 0.78
   2 ?   10.3   0.0   0.00025      0.51      37      64 ..      37      71 ..      33      74 .. 0.82
   3 ?   -1.4   0.0       1.1   2.2e+03      23      48 ..     103     128 ..      98     130 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.5
                HHHHHHCCCHHCHHCCC CS
        TrmB 15 laLlklgpatadeiaee 31
                la+l+++pa  +++ ++
  KIR66172.1  6 LAMLAKEPAYGYDLRSR 22
                78999999999888766 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00025
                HCHHHHHHHHHHCTSEEEESST.......TTEEEE CS
        TrmB 37 skvYevLrsLedkGlVerekgr.......pklYra 64
                 ++Y +L +L ++GlV+ ++ +       +++Y  
  KIR66172.1 37 GQIYVTLTRLAKAGLVTSQRVEglpdrpdRRVYAL 71
                589***************99888888876667765 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.1
                 CHHCHHCCCTTSSCHCHHHHHHHHHH CS
        TrmB  23 atadeiaeelgvprskvYevLrsLed 48 
                 a a  +a  +++  ++  evLr+L d
  KIR66172.1 103 AAAARLADPVDLVDAQRREVLRRLRD 128
                 56666666666666777789999987 PP

>> DUF2513  Hypothetical protein (DUF2513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00031      0.62      36      80 ..      33      77 ..       8      89 .. 0.86
   2 ?   -1.5   0.0       1.5   3.1e+03      73      80 ..     164     171 ..     145     172 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00031
     DUF2513 36 gyskeeiiyhlkllaeagLieaekkkakssiislvvkrLtweGhd 80
                ++++ +i+ +l+ la+agL+ ++ ++   + ++  v+ Lt +G +
  KIR66172.1 33 TMNAGQIYVTLTRLAKAGLVTSQRVEGLPDRPDRRVYALTPAGQQ 77
                445559*************************************87 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.5
     DUF2513  73 rLtweGhd 80 
                 + tw+Ghd
  KIR66172.1 164 ERTWTGHD 171
                 55999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1369.34
//
Query:       KIR66173.1  [L=369]
Description: FAD-dependent oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-51  174.4  11.7    5.6e-51  174.2  11.7    1.0  1  DAO             FAD dependent oxidoreductase
    0.00032   20.7   1.6      0.026   14.5   0.1    2.5  2  NAD_binding_9   FAD-NAD(P)-binding
    0.00041   20.5   2.6    0.00041   20.5   2.6    2.4  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0016   19.0   3.3     0.0023   18.5   2.3    1.7  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0022   17.3   6.6       0.01   15.1   3.1    2.3  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.025   13.7   8.5      0.041   13.0   7.9    1.8  1  FAD_binding_2   FAD binding domain
      0.028   14.9   0.0      0.043   14.2   0.0    1.4  1  NAD_binding_7   Putative NAD(P)-binding
      0.034   14.0   1.9      0.052   13.4   1.9    1.2  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.085   11.9   2.9       0.88    8.6   1.4    2.1  2  GIDA            Glucose inhibited division protein A
       0.18   12.0   0.7       0.33   11.2   0.7    1.4  1  TrkA_N          TrkA-N domain
        0.2   10.5   2.5        1.3    7.7   0.0    2.1  2  Trp_halogenase  Tryptophan halogenase
       0.25   11.3   0.9       0.41   10.6   0.9    1.3  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
       0.26   10.6   1.8       0.27   10.5   0.9    1.6  2  FAD_oxidored    FAD dependent oxidoreductase
       0.27   10.8   0.8        0.4   10.2   0.8    1.2  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.39    9.9   2.4       0.63    9.2   2.4    1.2  1  FAD_binding_3   FAD binding domain
        0.4    9.9   5.1       0.72    9.1   5.1    1.4  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
        1.9    7.1   3.4        2.5    6.7   2.4    1.6  2  HI0933_like     HI0933-like protein


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.2  11.7   5.3e-54   5.6e-51       1     350 [.       4     349 ..       4     351 .. 0.86

  Alignments for each domain:
  == domain 1  score: 174.2 bits;  conditional E-value: 5.3e-54
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTS.EEEEEEEEEESSHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgidid.yrrtGllslaadeeel 96 
                 +vv+iG+G+ G+++  +L+rrg  Vt+++++  ++ g+Sg++  +  s + + p    +++ls ++++  r+l++e  +  d y++ G l  a+de+ +
  KIR66173.1   4 HVVVIGAGVYGAAVTAALTRRGahVTVVDAA-VPAGGTSGATFSWTNS-CGKQPR--PYHDLSVAGMAAHRRLAAEV-PLSDwYHEGGNLEWADDEAGR 97 
                 79*****************************.5555**********99.633443..3569**************94.55566*************9** PP

                 HHHHHHHHHHHHTTTTEEEEEHHHHHHHSTT.ST...TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEE. CS
         DAO  97 ealdkllallleagldaelldaeevrelepa.lp...gllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttpgen. 190
                 ++l+++++ +l++g++a++l+++++++lep   p   +  g  ++p++g+++p +l+  l+++a  +G+e++++  vtgle  dg v  v+   +g++ 
  KIR66173.1  98 AKLRRKVEGVLDYGYEARWLTRAQALRLEPDmNPaelPDDGIAYFPQEGWIEPTRLIGHLLSTAVVAGAELVRHDAVTGLEVADGLVRSVH-LVSGRKi 195
                 ********9999******************97336564457789************************************99999999995.3347774 PP

                 EEEEEEEE--GGGHHHH.HTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSE....EETTCSSTSCSHHH CS
         DAO 191 daadavVnaaGawsdll.gllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtad....eesgdddpevdeed 284
                 ++ davVn+aG+++d + gl+  l lp++ +rg  + ++p            +v  ++  + gv+++p+ +gr+l+ +++       ++ ++ +vd+ +
  KIR66173.1 196 VT-DAVVNCAGPGTDRIaGLA-GLALPMRNTRGVLVYTSPAAV---------AVS-RVVHAPGVHLRPDGGGRLLLHTHEIdgaaHLDDSGEISVDQPA 282
                 55.************773444.4456************77533.........233.88899***************998867765444444499***** PP

                 HHHHHHHHHHHSGGGCG..EEEEEEEEEEET.TSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHH CS
         DAO 285 idellealrklfPqlgd..vlrkwaGlrplp.dglpligetpgvkglylatGhsghGltlapatGklla 350
                 +d++l a r+l+P+l+d  v++ ++G rp p dglp++g++   +++++a  h  +G tl+  +G l+a
  KIR66173.1 283 VDRVLAAGRALYPGLRDvvVESVRVGERPIPgDGLPVLGRVVDLPNFHFAVSH--SGATLSVHAGDLVA 349
                 **************999444479******866********88899*****999..99999999999998 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   2.5e-05     0.026       1      93 [.       6     102 ..       6     124 .. 0.77
   2 ?    5.0   0.3     0.021        22     119     154 ..     169     205 ..     154     207 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.5e-05
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddp.............ptfaeWlrergaleeae 83 
                    +++GaG+ G+av+++L +r       ++t++d + p  g+   +   +  ++N+  ++  +++d +               + +W++e g+le a+
     KIR66173.1   6 VVIGAGVYGAAVTAALTRR-----GAHVTVVDAAVPA-GGTSGA---TFSWTNSCGKQPRPYHDLSvagmaahrrlaaeVPLSDWYHEGGNLEWAD 92 
                    69****************9.....59*******7664.444444...4568999999999999999999999999998888888888888622234 PP

  NAD_binding_9  84 eldpddfvpR 93 
                    +  +++ ++R
     KIR66173.1  93 DEAGRAKLRR 102
                    4444444444 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.021
  NAD_binding_9 119 vhraevvdleeradgq.avlladgaslaadaVvLAlG 154
                    v ++ v+ le +++ +  v+l +g+++  daVv + G
     KIR66173.1 169 VRHDAVTGLEVADGLVrSVHLVSGRKIVTDAVVNCAG 205
                    345677778877666558***************9999 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   2.6   3.9e-07   0.00041       1      34 [.       7      40 ..       7      63 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.9e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGr 34
                   ++GaG+ G++  ++L+++g++v++++++   GG 
     KIR66173.1  7 VIGAGVYGAAVTAALTRRGAHVTVVDAAVPAGGT 40
                   8**************************9888875 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   2.3   2.2e-06    0.0023       1      30 [.       4      33 ..       4      38 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.2e-06
                EEEEECSSHHHHHHHHHHHHTTSEEEEEES CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvver 30
                +vvv+G+G+ g  + +al++ g++Vtvv++
  KIR66173.1  4 HVVVIGAGVYGAAVTAALTRRGAHVTVVDA 33
                89**************************86 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   3.1   9.5e-06      0.01     143     174 ..       3      34 ..       1      42 [. 0.93
   2 ?    3.2   0.1      0.04        42     206     258 ..     174     227 ..     160     243 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.5e-06
                  SEEEEES-SHHHHHHHHHHHHHT-EEEEEESS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalaklgkevtlvear 174
                  +++vv+G+G+ G  ++aal++ g++vt+v+a+
   KIR66173.1   3 EHVVVIGAGVYGAAVTAALTRRGAHVTVVDAA 34 
                  69***************************985 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.04
                  EEEEEETTEEEE.EEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTEE CS
                  xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Pyr_redox_2 206 vkeidgngekle.vvledgeeidadlvvvavGvrpstelle.eklglelderggi 258
                  v+ ++  +  ++ v+l +g++i +d vv ++G   ++ +++   l l++ +++g+
   KIR66173.1 174 VTGLEVADGLVRsVHLVSGRKIVTDAVVNCAGPGTDR-IAGlAGLALPMRNTRGV 227
                  45555555556679999***************99996.55667777777544444 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   7.9   3.9e-05     0.041       2      52 ..       5      55 ..       4     210 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.9e-05
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..S CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspe 52
                   v+ViG+G+ G a +++++++G+ v+vv+ + + gg++ + + + +  ++++
     KIR66173.1  5 VVVIGAGVYGAAVTAALTRRGAHVTVVDAAVPAGGTSGATFSWTNSCGKQP 55
                   9*********9999999**********************999999888665 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.1e-05     0.043       8      40 ..       3      35 ..       1     125 [. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.1e-05
  NAD_binding_7  8 kkvlvvGgGevAarkvrklleagakvtvvapev 40
                   ++v+v+G+G  +a     l + ga+vtvv+ +v
     KIR66173.1  3 EHVVVIGAGVYGAAVTAALTRRGAHVTVVDAAV 35
                   79***************************9886 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.9     5e-05     0.052       1      31 [.       4      34 ..       4      49 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5e-05
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S- CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdis 31
                +v viGaG+ Ga ++a++ ++g +V++vd +
  KIR66173.1  4 HVVVIGAGVYGAAVTAALTRRGAHVTVVDAA 34
                599*************************975 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.4   0.00083      0.88       2      29 ..       5      35 ..       4      66 .. 0.83
   2 ?    2.7   0.0     0.051        54     113     150 ..     169     206 ..     167     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00083
                EEEE-SSHHHHHHHHHHHHTT--EEEE...E CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLi...t 29
                v+ViG+G  G +  +a+ r+Ga+v+ +   +
  KIR66173.1  5 VVVIGAGVYGAAVTAALTRRGAHVTVVdaaV 35
                9***********************9985541 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.051
                 EEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 113 iieeeveeliveekkvkgvvtedgetikakavviatGt 150
                 ++++ v+ l+v ++ v+ v + +g++i ++avv  +G+
  KIR66173.1 169 VRHDAVTGLEVADGLVRSVHLVSGRKIVTDAVVNCAGP 206
                 5778999******************************9 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7   0.00031      0.33       1      29 [.       5      33 ..       5      35 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00031
                EEEES-SHHHHHHHHHHHHTTEEEEEEES CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidk 29
                +++iG+G  G +++  L+++g +v+v+d 
  KIR66173.1  5 VVVIGAGVYGAAVTAALTRRGAHVTVVDA 33
                79*****************6657****96 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   2.6      0.19     2e+02       2      34 ..       5      34 ..       4      48 .. 0.87
   2 ?    7.7   0.0    0.0013       1.3     157     211 ..     154     208 ..     117     245 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.19
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlvese 34
                    +v++G+G  G  + aal + +   ++vt+v+++
      KIR66173.1  5 VVVIGAGVYGAAVTAALTRRG---AHVTVVDAA 34
                    9*********99999999999...889999864 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0013
                     HHHHHHHHHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG- CS
  Trp_halogenase 157 akfLrrvaearGvtrvegkvvevqldedgrveslrledgreveadlfiDcsGfrg 211
                       +L   a  +G + v+ + v+    +dg v s++l +gr++  d ++ c G   
      KIR66173.1 154 IGHLLSTAVVAGAELVRHDAVTGLEVADGLVRSVHLVSGRKIVTDAVVNCAGPGT 208
                     567888899999999999999998899************************9654 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.9   0.00039      0.41       2      27 ..       5      30 ..       4      35 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
                    EEEE--SHHHHHHHHHHHTTT--EEE CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrl 27
                    + v+GaG +G a+ ++l+++g +v++
      KIR66173.1  5 VVVIGAGVYGAAVTAALTRRGAHVTV 30
                    89*******************99986 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.9   0.00026      0.27       2      43 ..       5      46 ..       4     122 .. 0.86
   2 ?   -2.1   0.0       1.7   1.8e+03     100     146 ..     164     207 ..     140     219 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00026
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglv 43
                  vvV+G+g+ G a   a  r+Ga v +v+     GG++ +   
    KIR66173.1  5 VVVIGAGVYGAAVTAALTRRGAHVTVVDAAVPAGGTSGATFS 46
                  9*********99999999****************98766554 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.7
  FAD_oxidored 100 agvtvllntrlvevekegkriesvtveskegrktirAkvfiDATgdG 146
                   ag +++ +  +++ e+ ++ ++sv + s   +++i  + ++ + g G
    KIR66173.1 164 AGAELVRHDAVTGLEVADGLVRSVHLVS---GRKIVTDAVVNCAGPG 207
                   5788999999999999887799999986...6666677777777666 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.8   0.00038       0.4       2      31 ..       4      33 ..       3      36 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00038
                    EEEEE--STTHHHHHHHHHHCTSEEEEE-S CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevigvDi 31
                    +++viG+G  G+   a+l ++g +v++vD 
      KIR66173.1  4 HVVVIGAGVYGAAVTAALTRRGAHVTVVDA 33
                    589**************************6 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.4    0.0006      0.63       3      32 ..       4      33 ..       3      44 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0006
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvek 32
                    V+++GaG  G+  +  L+++G  v++v+ 
     KIR66173.1  4 HVVVIGAGVYGAAVTAALTRRGAHVTVVDA 33
                   599*************************96 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.1   0.00068      0.72      30      59 ..       4      33 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00068
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEES CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDv 59
                 +v+viG+Gv G +  a+ ++ ga+Vtv+D 
   KIR66173.1  4 HVVVIGAGVYGAAVTAALTRRGAHVTVVDA 33
                 79**********999999**********97 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   2.4    0.0024       2.5       2      33 ..       4      35 ..       3      40 .. 0.90
   2 ?   -1.7   0.0      0.86     9e+02     111     164 ..     153     206 ..     148     238 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0024
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 +v+viG+G  G   ++++ +rg++V+++++a 
   KIR66173.1  4 HVVVIGAGVYGAAVTAALTRRGAHVTVVDAAV 35
                 79*********9999999***********875 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.86
                  HHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 111 ivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                  ++  ll+++  ag +l  + +v+++e  ++ + +v++ s++++ +d++v   G 
   KIR66173.1 153 LIGHLLSTAVVAGAELVRHDAVTGLEVADGLVRSVHLVSGRKIVTDAVVNCAGP 206
                  667788888889999999999999999999999999999999999999877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2889.62
//
Query:       KIR66174.1  [L=207]
Description: LuxR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-13   49.8   0.0    3.9e-13   48.7   0.0    1.6  1  GerE             Bacterial regulatory proteins, luxR family
    0.00023   21.1   0.0    0.00057   19.9   0.0    1.6  1  HTH_29           Winged helix-turn helix
      0.006   16.4   0.0      0.013   15.2   0.0    1.6  1  HTH_23           Homeodomain-like domain
  ------ inclusion threshold ------
      0.057   13.2   0.0       0.15   11.9   0.0    1.7  1  HTH_38           Helix-turn-helix domain
      0.062   12.6   2.4       0.14   11.4   1.4    1.8  2  EutC             Ethanolamine ammonia-lyase light chain (EutC
      0.089   12.4   0.4       0.13   11.8   0.0    1.6  2  PGP_phosphatase  Mitochondrial PGP phosphatase


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   1.3e-16   3.9e-13       3      57 .]     147     201 ..     145     201 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 1.3e-16
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 L  RE +vLrl+aeG+ ++eIA++l  Se+TVk+ +     +L++++r+++v +a
  KIR66174.1 147 LNAREIDVLRLMAEGLDTNEIASRLCYSERTVKNVIYGFTHRLKLRNRSHAVAYA 201
                 789*************************************************997 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.9e-07   0.00057       4      33 ..     154     182 ..     152     185 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.9e-07
      HTH_29   4 allllaeGvstvsqiAkllglsrrtvyrwl 33 
                 +l+l+aeG++ + +iA +l++s+rtv +++
  KIR66174.1 154 VLRLMAEGLD-TNEIASRLCYSERTVKNVI 182
                 89*******9.***************8875 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.5e-06     0.013      10      41 ..     154     185 ..     149     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.5e-06
      HTH_23  10 illllaeGlsvreIAreLgvsrrTvyrwlkry 41 
                 +l+l aeGl + eIA +L  s+rTv +++  +
  KIR66174.1 154 VLRLMAEGLDTNEIASRLCYSERTVKNVIYGF 185
                 89999*********************998766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     5e-05      0.15      15      40 ..     156     181 ..     146     182 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5e-05
      HTH_38  15 rllaeGlslreIArrLgrspsTIsRE 40 
                 rl aeGl   eIA rL++s  T+ + 
  KIR66174.1 156 RLMAEGLDTNEIASRLCYSERTVKNV 181
                 5679******************9886 PP

>> EutC  Ethanolamine ammonia-lyase light chain (EutC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.4   4.8e-05      0.14      74     168 ..      14     110 ..       6     119 .. 0.73
   2 ?   -0.2   0.0      0.16   4.9e+02     103     134 ..     136     167 ..     112     178 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.8e-05
                 TT-HHHHTSB-HHH.HHHHHHHS-SS-SEEEEEE-TT-HHHHHTTHHHHHHH.HHHHHHTTTS-B---EEEET--TTHHHHHHHHHT-SEEEEEEE- CS
        EutC  74 LrrPdlGrklsees.leklkekaeeeadvaivvaDGLsaeAveenaaellea.llealkeaglsvapvvlveqgRValgdeigellgakvvvvliGE 168
                 L+r  +G  l++++ ++ l++ ++ eadv +vvaD L ++ v+    +  ++   + l ++++s a+++ +  +RV + +  +++   ++v  l+  
  KIR66174.1  14 LSRAGVGDYLRHRAeVTLLDDGRQGEADVLLVVADRLTTDVVAVLRRNAAATgAPTVLIANEISQAELITAVDCRVVAIQPRAAITTDRLVDSLVAA 110
                 6677778888776615556677799*************998754433333330334466669**************998887777777777666655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.16
                 EEEE-TT-HHHHHTTHHHHHHHHHHHHHTTTS CS
        EutC 103 ivvaDGLsaeAveenaaelleallealkeagl 134
                 ++   GL a+ +++   ++l+ ++e+l+++++
  KIR66174.1 136 VLTPHGLTASGLNAREIDVLRLMAEGLDTNEI 167
                 55567888888888888888888888887655 PP

>> PGP_phosphatase  Mitochondrial PGP phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.5e-05      0.13     108     153 ..       5      57 ..       1      77 [. 0.71
   2 ?   -3.2   0.1       1.9   5.6e+03     139     157 ..      96     114 ..      85     117 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.5e-05
  PGP_phosphatase 108 pVlrhkekKPgcaeevleyfkerkvve........eadeiavvgDRllTdvlla 153
                      +V  h+   P ++  v +y+++r +v+        ead ++vv DRl+Tdv++ 
       KIR66174.1   5 RVAVHT-TDPLSRAGVGDYLRHRAEVTllddgrqgEADVLLVVADRLTTDVVAV 57 
                      555554.468888999999999988764444444468899***********964 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.9
  PGP_phosphatase 139 iavvgDRllTdvllanmmG 157
                       a+  DRl+  +++a+  G
       KIR66174.1  96 AAITTDRLVDSLVAARDGG 114
                      5778899987777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1402.38
//
Query:       KIR66175.1  [L=1089]
Description: ATPase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-24   85.4   0.0      1e-12   48.2   0.0    3.5  3  Beta_helix    Right handed beta helix region
    4.7e-17   62.7   0.0    7.4e-15   55.5   0.0    2.3  2  AAA           ATPase family associated with various cellular 
    2.4e-14   53.3   1.6    1.5e-13   50.7   0.1    3.2  3  AAA_lid_6     AAA lid domain
    5.3e-07   30.2   2.1      0.015   15.7   0.0    2.6  2  AAA_16        AAA ATPase domain
    4.9e-06   26.0   0.0    4.5e-05   22.8   0.0    2.2  2  NosD          Periplasmic copper-binding protein (NosD)
      2e-05   24.6   0.2      0.005   16.8   0.1    2.5  2  AAA_5         AAA domain (dynein-related subfamily)
    3.5e-05   24.1   1.2       0.12   12.7   0.1    4.0  3  AAA_22        AAA domain
    0.00036   20.0   0.4      0.044   13.2   0.1    2.9  3  Mg_chelatase  Magnesium chelatase, subunit ChlI
    0.00074   19.3   2.6     0.0039   16.9   0.4    2.6  2  AAA_30        AAA domain
    0.00093   19.1   0.3      0.094   12.6   0.1    2.6  2  NTPase_1      NTPase
     0.0035   17.1   0.0     0.0093   15.7   0.0    1.7  1  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
  ------ inclusion threshold ------
      0.017   15.5   0.2        1.3    9.4   0.1    2.6  2  AAA_19        AAA domain
      0.052   13.7   0.4       0.22   11.6   0.1    2.2  2  AAA_33        AAA domain
      0.078   13.5   0.1       0.44   11.1   0.1    2.3  2  AAA_18        AAA domain
      0.083   12.2   0.2       0.21   10.9   0.2    1.7  1  DUF1565       Protein of unknown function (DUF1565)
       0.25   10.5   0.1        3.2    6.9   0.0    2.4  3  DUF815        Protein of unknown function (DUF815)
        6.1    5.9   5.1         12    5.0   0.1    2.8  4  TIP49         TIP49 P-loop domain


Domain annotation for each model (and alignments):
>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.8e-05      0.03       9      73 ..      99     163 ..      80     164 .. 0.79
   2 !   48.2   0.0   9.5e-16     1e-12       1     149 [.     160     306 ..     160     318 .. 0.95
   3 !   21.2   0.0   1.9e-07    0.0002       2     137 ..     366     497 ..     363     510 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.8e-05
                 -E.EEESEEEES-SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT-S-EEES-EEE---SEEE- CS
  Beta_helix   9 snvtiknntisnsggyGiylrgssnvvienneiannsgsGiyilgssnntisnntisdnngggia 73 
                 ++v ++n+t++++ + ++ +r+ +++ + ++++ + +g Gi ++++  +t+++ +++d  ++gi 
  KIR66175.1  99 GQVALDNCTVRGAAWVALLARHEGSIALHGCTVGSTGGAGIVVTSDRLSTVEDTVVTDVSSSGIV 163
                 34578888888888888888888888888888888888888888888888888888888877775 PP

  == domain 2  score: 48.2 bits;  conditional E-value: 9.5e-16
                 -SEEE-SS-E.EEESEEEES-SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT-S-EEES-EEE---SEEE-TT--S--EEES-EEES-SS-SEE-TT CS
  Beta_helix   1 sgisingssnvtiknntisnsggyGiylrgssnvvienneiannsgsGiyilgssnntisnntisdnngggialfgasnnlienneitdnggsGiylny 99 
                 sgi++   +++t++ + ++++g++Gi+++g+ ++vie++ i++ +   + +++  ++ +++ t++d+ ++ ++++g   ++i ++e+t  +    ++ +
  KIR66175.1 160 SGIVVAEKGVLTLRRSAVRSPGDNGICVNGDARCVIEECGITGAGKPALVVEQRGHARVTGLTVRDSRNVDLYVRGEVDVTITGSEFTGAEVQAAHVAD 258
                 69*****************************************************************************************99****** PP

                 -S--EEES-EEESTT--SEE---TT---EEES-EEES-SSEEEE-TT-SS CS
  Beta_helix 100 ssnntienNiidnnagsGividdsssnvtvtnNtitnnkgaGiavvgsss 149
                      ++++ +++ +g++++++ ++ + ++t++t+ ++  +G++  g+s+
  KIR66175.1 259 GATPHFHDCLFRSAGGAAVHVTGGA-RPRFTDCTVADSP-VGVQADGGSR 306
                 *************************.9999********9.***9998887 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 1.9e-07
                 SEEE-SS-E.EEESEEEES-SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT-S-EEES-EEE---SEEE-TT--S--EEES-EEES-SS-SEE-TT- CS
  Beta_helix   2 gisingssnvtiknntisnsggyGiylrgssnvvienneiannsgsGiyilgssnntisnntisdnngggialfgasnnlienneitdnggsGiylnys 100
                 +++++g++++t+ +  +s+ g ++++++g+s+  +e+ ++ +    G+    ++ +t+++++i    g+++ + ++   +  + +i+d gg+G+ l   
  KIR66175.1 366 AVEVRGGGVATVCDARLSGGGEHAVTVGGGSTLGLESARLRG---AGLLAVDAATVTVRDCEIVAASGTALTAGDGVLLTAARTRIRDAGGTGVLLGPG 461
                 578888899999999999999999999999995555444444...555555555666666666655533333333333444556666666666666666 PP

                 S--EEES-EEESTT--SEE---TT---EEES-EEES- CS
  Beta_helix 101 snntienNiidnnagsGividdsssnvtvtnNtitnn 137
                 s+ t++++ + + ag+G+ +d +   v+ t +t+ ++
  KIR66175.1 462 SSGTLTECEVLDSAGDGVGVDTGL-PVELTRCTVRGS 497
                 666666666666666666666666.555566665544 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0     7e-18   7.4e-15       2     131 ..     596     729 ..     595     730 .. 0.83
   2 ?    4.8   0.0     0.033        35       1      67 [.     885     955 ..     885     987 .. 0.72

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 7e-18
                 EEESSTTSSHHHHHHHHHHHH.......THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel.......gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLltel 93 
                 ++ GppGtGKT++a+   + l       + +++e   ++l+ +y+g ++ k+ el+++a       +lf+DE++ l   + gs  +++++++++L++++
  KIR66175.1 596 VFAGPPGTGKTTVARLYGSVLaelgvltKGHLVEAARADLVGQYIGSTAIKTTELVTRA--LG--GVLFVDEAYTLSAGSGGSGPDFGQEAIDALMKMM 690
                 799************7655543335555699*************************987..44..9**********9999999**************** PP

                 HHTTTSSSTEEEEEEESS..GGGSTHHHH.S.TTSSEEEETT CS
         AAA  94 dgvkkkeskvivigatnr..pdkldpall.r.gRfdrkieie 131
                 ++ +++   ++vi+a+++  + ++ +    + +Rf+r +e++
  KIR66175.1 691 EDHRDE---LVVIVAGYSelMGRFLDSNPgLaSRFTRTVEFP 729
                 *****4...666666555447777666665679999999887 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.033
                 EEEESSTTSSHHHHHHHHHHHHT.......HEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETG CS
         AAA   1 vllyGppGtGKTllakavakelg.......vefleisgsell.skyvgesekkirelfkeakekakpsilfiDEi 67 
                 v+++G  G G+T  a+  a  l+        +++++s++  l  ++ g++ + +r+ +++a+      +l+++ +
  KIR66175.1 885 VVITGRRGDGRTEYARHYAAALSelglvstGQLVRVSVAGELaPQWPGQARHLVRAAVRDARG----GVLVVEHA 955
                 57899****************844445444779999987666599*************99863....45666555 PP

>> AAA_lid_6  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       7.4   7.8e+03      39      58 ..     723     740 ..     719     741 .. 0.77
   2 !   50.7   0.1   1.4e-16   1.5e-13       1      62 []     753     812 ..     753     812 .. 0.98
   3 ?   -1.2   0.1       2.3   2.5e+03       1      25 [.     860     884 ..     860     885 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.4
   AAA_lid_6  39 dRlattddseltredlmtLt 58 
                 +R ++   ++++ ++l t+t
  KIR66175.1 723 TRTVE--FPNYSVDELVTIT 740
                 56666..8999*******98 PP

  == domain 2  score: 50.7 bits;  conditional E-value: 1.4e-16
   AAA_lid_6   1 eeAeevlrellerrrrdenfGNARfVRnllekairrqadRlattddseltredlmtLtaeDi 62 
                 ++A +++  ++er ++ ++fGN+R +R+l+e++i +qa Rla+   ++  +  l++Lta+D+
  KIR66175.1 753 DDAHDAVARYFERVPKGPTFGNGRVARKLFEAMINNQASRLAA--LPPGRDVALNRLTAADL 812
                 7999***************************************..9***************7 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.3
   AAA_lid_6   1 eeAeevlrellerrrrdenfGNARf 25 
                 e+A + l el++ r r+++ G A+ 
  KIR66175.1 860 EAAAATLVELCRLRGRQRSIGRAGN 884
                 6899999*****6666666665554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.4e-05     0.015       7      63 ..     566     630 ..     561     705 .. 0.72
   2 !   13.2   0.5   8.3e-05     0.088      18     117 ..     876    1026 ..     857    1059 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.4e-05
      AAA_16   7 eeleqLlsalervrsgrp.........elvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 +e+++L ++++++ + +          + +++ G++G+GK++++r    ++ ++ g++++g+ ++ 
  KIR66175.1 566 QEVSALVNLIRMAQARQRmglpmppmsRHLVFAGPPGTGKTTVARLYG-SVLAELGVLTKGHLVEA 630
                 6777777777733333333455888889****************9888.56655456666666666 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 8.3e-05
      AAA_16   18 rvrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala....... 106 
                  + + gr ++v+++G +G G +  +r+ + al++  g++ +g+ ++ + a ++++ +  ++ r +l+r+  ++a+   l   +++ e+a++       
  KIR66175.1  876 QRSIGRAGNVVITGRRGDGRTEYARHYAAALSEL-GLVSTGQLVRVSVAGELAPqWPGQA-R-HLVRAAVRDARGGVLVVEHARAEGAAEvlealvd 969 
                  4456777*********************988888.9**********88888888677777.7.9*****9997777777777777777666666666 PP

      AAA_16  107 ..........................................avpelagaea............s 117 
                                                            +                     +
  KIR66175.1  970 emrdnpadplvvligeepvtdgvpgladafgrrwrvpphsaaE--------LgeiavrqllrrgH 1026
                  6667777777777777777777777777777666554443331........22222344444443 PP

>> NosD  Periplasmic copper-binding protein (NosD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   4.3e-08   4.5e-05      42     180 ..     117     257 ..      42     266 .. 0.84
   2 ?    0.5   0.0      0.29   3.1e+02      62     144 ..     409     493 ..     382     504 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 4.3e-08
        NosD  42 lldnssnntitgntienl.ryGihlensesntiedntlssne.sGialmsssnntlenNtisnnenyGillsdssnntisnNtis.nnnkGiflensss 137
                 l+ ++ ++ + g+t+ +   +Gi++++   +t+ed ++++ + sGi++ ++   tl+ + +++  ++Gi +++ + + i++  i+   + ++ +e+  +
  KIR66175.1 117 LARHEGSIALHGCTVGSTgGAGIVVTSDRLSTVEDTVVTDVSsSGIVVAEKGVLTLRRSAVRSPGDNGICVNGDARCVIEECGITgAGKPALVVEQRGH 215
                 445555566666655444489999999999**********999********999**********99*******************99999********* PP

        NosD 138 ntitgNriesnqkiGilllsssegntiynNyFinnsenvkydg 180
                  ++tg ++ ++++++++ + +  + ti++  F + +++++ ++
  KIR66175.1 216 ARVTGLTVRDSRNVDLY-VRGEVDVTITGSEFTGAEVQAAHVA 257
                 *****************.9999999999999999988887665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.29
        NosD  62 GihlensesntiedntlssnesGialmsssnn..tlenNtisnnenyGillsdssnntisnNtis.nnnkGiflensssntitgNr 144
                 G+  +++  +t++d+++   + G al+   +   t    +i++  + G+ll   s+ t+++ +++ + ++G+ ++     ++t+++
  KIR66175.1 409 GLLAVDAATVTVRDCEIVAAS-GTALTAGDGVllTAARTRIRDAGGTGVLLGPGSSGTLTECEVLdSAGDGVGVDTGLPVELTRCT 493
                 666677777888888888855.6666665544236667788888889999999999999999998888888877765555555555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   4.7e-06     0.005       1      74 [.     594     664 ..     594     669 .. 0.87
   2 ?    5.4   0.0     0.016        17       1      23 [.     884     906 ..     884     968 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.7e-06
                 EEEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESG CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEv 74 
                 +++  GppGtgK+++a+ + ++l +  v+++       ++dl+g++    g t+ +  +lv+ a  g +l++DE 
  KIR66175.1 594 HLVFAGPPGTGKTTVARLYGSVLaELGVLTKGHLVEAARADLVGQYI---GSTAIKTTELVTRAL-GGVLFVDEA 664
                 68899******************98899999888999*********9...899999999997775.668888875 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.016
                 EEEEE--SSSSHHHHHHHGGGGB CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal 23 
                 +v++ G  G g++e a+++aaal
  KIR66175.1 884 NVVITGRRGDGRTEYARHYAAAL 906
                 6999*****************99 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   0.00011      0.12       6      27 ..     593     614 ..     592     620 .. 0.87
   2 ?    2.9   0.0      0.12   1.3e+02      91     135 ..     650     709 ..     611     711 .. 0.74
   3 ?    4.5   0.0     0.037        39       4      31 ..     881     908 ..     876    1026 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      AAA_22   6 gilvvtGesGtGKTtllrrlle 27 
                 ++lv  G++GtGKTt++r + +
  KIR66175.1 593 RHLVFAGPPGTGKTTVARLYGS 614
                 589999************9965 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.12
      AAA_22  91 v.....ielliiDEaqhlr..s........eealeeLrsllnlsrkgvqliLvGtpelrk 135
                        ++l +DEa  l+  s        +ea+  L ++++++r+ + +i++G  el  
  KIR66175.1 650 LvtralGGVLFVDEAYTLSagSggsgpdfgQEAIDALMKMMEDHRDELVVIVAGYSELMG 709
                 03333458**********776266688899999999988888899******999888765 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.037
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqlde 31 
                 +ag +v+tG  G G+T  +r ++  l e
  KIR66175.1 881 RAGNVVITGRRGDGRTEYARHYAAALSE 908
                 68999*****************999865 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   4.2e-05     0.044      23      49 ..     593     619 ..     577     633 .. 0.86
   2 ?    3.7   0.0     0.032        34      91     117 ..     640     666 ..     626     694 .. 0.79
   3 ?   -3.3   0.0       4.5   4.8e+03      24      49 ..     884     909 ..     879     921 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.2e-05
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlpsllppl 49 
                    +l+++GppG+GKt +a+   s+l++l
    KIR66175.1 593 RHLVFAGPPGTGKTTVARLYGSVLAEL 619
                   5799**************999999986 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.032
  Mg_chelatase  91 vGggskpkpGeislahnGvLfLDElpe 117
                   +G+ ++ +   +++a  GvLf+DE+  
    KIR66175.1 640 IGSTAIKTTELVTRALGGVLFVDEAYT 666
                   455556666679************865 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 4.5
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllppl 49 
                   n++++G  G G+t  a+  ++ l++l
    KIR66175.1 884 NVVITGRRGDGRTEYARHYAAALSEL 909
                   89999999***999999888877765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.4   3.7e-06    0.0039      21     100 ..     595     667 ..     590     703 .. 0.83
   2 ?    1.3   0.1      0.22   2.3e+02      21      50 ..     885     918 ..     875     987 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.7e-06
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmv 100
                  v  Gp+GtGKtt+ + +  ++++ g    g   +++ A+ +++ +g +a  + +l++r  g        +l vDEa  +
  KIR66175.1 595 LVFAGPPGTGKTTVARLYGSVLAELGVLTKGHLVEAARADLVGQYIGSTAIKTTELVTRALG-------GVLFVDEAYTL 667
                 6789**********************9999999999999********999999999966655.......79999999776 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.22
      AAA_30  21 avltGpAGtGKttalkalreaweaag....grvi 50 
                 +v+tG+ G G t   +++++a+ + g    g+++
  KIR66175.1 885 VVITGRRGDGRTEYARHYAAALSELGlvstGQLV 918
                 799***************9999999855552222 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   8.9e-05     0.094       1      40 [.     594     633 ..     594     655 .. 0.87
   2 ?    3.8   0.0     0.045        47       1      32 [.     884     915 ..     884     923 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.9e-05
                 EEEEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE-- CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlellkssgvkvgGfyteevre 40 
                 +++  GppG+GKtT+ +   ++l++ gv  +G ++e  r 
  KIR66175.1 594 HLVFAGPPGTGKTTVARLYGSVLAELGVLTKGHLVEAARA 633
                 56789***************************99999884 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.045
                 EEEEE--TTSSHHHHHHHHHHHH...GGGEEE CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlellkssgvkvgG 32 
                 +v+iTG+ G G t   +  + +l++ g+  +G
  KIR66175.1 884 NVVITGRRGDGRTEYARHYAAALSELGLVSTG 915
                 699********************999988777 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.9e-06    0.0093      32      77 ..     591     637 ..     554     699 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.9e-06
      RuvB_N  32 aldhvllyGpPGlGkttlakiiakelgvklkitsgPvleka.gdlaa 77 
                    h++++GpPG Gktt+a++  + l      t g  +e a +dl++
  KIR66175.1 591 MSRHLVFAGPPGTGKTTVARLYGSVLAELGVLTKGHLVEAArADLVG 637
                 357****************9988777666666777777654245554 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1    0.0012       1.3      11      38 ..     593     620 ..     589     634 .. 0.80
   2 ?    3.3   0.0     0.093        98      10      52 ..     882     924 ..     876     946 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0012
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelg 38 
                 ++l+  ++pGtGKT+v +   ++l elg
  KIR66175.1 593 RHLVFAGPPGTGKTTVARLYGSVLAELG 620
                 667788999*******998887777766 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.093
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftg 52 
                 ++++++t+  G G T+  +h  a l elg v+  +++ v+++g
  KIR66175.1 882 AGNVVITGRRGDGRTEYARHYAAALSELGLVSTGQLVRVSVAG 924
                 6789*************************99998888887765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.2   3.4e+03       1      16 [.     194     209 ..     194     226 .. 0.78
   2 ?   11.6   0.1   0.00021      0.22       3      19 ..     596     612 ..     595     647 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.2
      AAA_33   1 lvllvGlpGsGKstla 16 
                 +++ +G  G+GK  l+
  KIR66175.1 194 VIEECGITGAGKPALV 209
                 5777********7665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00021
      AAA_33   3 llvGlpGsGKstlaerl 19 
                 ++ G+pG+GK+t+a+ +
  KIR66175.1 596 VFAGPPGTGKTTVARLY 612
                 799***********976 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00042      0.44       3      17 ..     597     611 ..     595     633 .. 0.89
   2 ?   -2.7   0.0       7.5   7.9e+03      70      94 ..     878     902 ..     857     906 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00042
      AAA_18   3 ltGtpGvGKttlake 17 
                  +G+pG+GKtt+a+ 
  KIR66175.1 597 FAGPPGTGKTTVARL 611
                 69**********985 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 7.5
      AAA_18  70 aleegknlvidghlaeleseaakdi 94 
                 + + ++n+vi g++++ + e+a+ +
  KIR66175.1 878 SIGRAGNVVITGRRGDGRTEYARHY 902
                 4577899999999999998888765 PP

>> DUF1565  Protein of unknown function (DUF1565)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2    0.0002      0.21       9     142 ..      10     164 ..       2     213 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0002
     DUF1565   9 GsksaPfktiTkAlllakageviqlapGtYsea..tgEtFPlvipegvnlvGneagKGlskslyagk...................kvgp.lisgggdd 85 
                 G + + + ti  Al+ a++g++i++ +G Yse    g    +   +gv  v  +   G    ++ g                    +v    +      
  KIR66175.1  10 GGRPNAYPTIGSALSRARPGTTIAVHAGRYSERlvVGNSVTIAAEDGVGTVEVHVEEGS-VLVGNGTgaqlrgivlssaddrlaavDVHSgQVALDNCT 107
                 55667799***********************9733477777766666666655555555.222222223222222222222222221111111111122 PP

     DUF1565  86 lsgvqnvtivlaneatia..GvtitNpnilkgtgvliesa.sakianNtitgniadGiev 142
                 + g   v+++  +e +ia  G t+  +    g g++++s   +++++  +t++   Gi v
  KIR66175.1 108 VRGAAWVALLARHEGSIAlhGCTVGST---GGAGIVVTSDrLSTVEDTVVTDVSSSGIVV 164
                 234444444444433332113333333...667777777666777777777777777666 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.4   2.5e+03      54      81 ..     593     620 ..     590     637 .. 0.67
   2 ?    6.9   0.0     0.003       3.2     181     248 ..     717     787 ..     709     789 .. 0.84
   3 ?    0.1   0.1      0.35   3.7e+02      52      81 ..     881     910 ..     868     921 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.4
      DUF815  54 nnvLLwGarGtGKSslvkallneyaeeg 81 
                 +++++ G  GtGK ++ +   + +ae g
  KIR66175.1 593 RHLVFAGPPGTGKTTVARLYGSVLAELG 620
                 678899*******999887666555555 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.003
      DUF815 181 sLsdRFGlwlgFykldqeeYleiveklakklglelekeeleeeAlewalergsr...sgRvArqfvkelag 248
                  L+ RF  ++ F + + +e ++i ++l++k+  el++++ ++ A  +++   +    +gRvAr+ ++ +++
  KIR66175.1 717 GLASRFTRTVEFPNYSVDELVTITSNLCAKHYYELTDDAHDAVARYFERVPKGPtfgNGRVARKLFEAMIN 787
                 599*********************************99999999999876544323379999998887765 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.35
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeeg 81 
                 +a nv+++G rG G+    +   ++++e g
  KIR66175.1 881 RAGNVVITGRRGDGRTEYARHYAAALSELG 910
                 589***********9988888777776655 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       5.3   5.6e+03      29      61 ..     319     353 ..     298     355 .. 0.72
   2 ?    5.0   0.1     0.011        12      50      67 ..     592     609 ..     544     657 .. 0.65
   3 ?   -2.4   0.0         2   2.1e+03     277     290 ..     654     667 ..     634     668 .. 0.82
   4 ?    2.2   0.2     0.077        81      24      74 ..     850     906 ..     834     914 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 5.3
                 XXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  29 qkkarea..agvivelikekklaGravLlaGpsgt 61 
                  + ar    agv ++ ++++++aG ++L+ G +  
  KIR66175.1 319 EHVARVVggAGVELSRLRADRFAGAGLLVDGATVE 353
                 55566541156666678999*********998765 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.011
                 XXXXXXXXXXXXXXXXXX CS
       TIP49  50 GravLlaGpsgtGktala 67 
                  r +++aGp+gtGkt +a
  KIR66175.1 592 SRHLVFAGPPGTGKTTVA 609
                 48999***********99 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2
                 XXXXXXXXXXXXXX CS
       TIP49 277 ivpGvlfiDevhml 290
                  + Gvlf+De++ l
  KIR66175.1 654 ALGGVLFVDEAYTL 667
                 4679******9865 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.077
                 XXXXXXXXXXXXX.XXXXXXXX...XXXXXXXX..XXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  24 eglvGqkkareaa.gvivelik...ekklaGra..vLlaGpsgtGktalaiaiskel 74 
                 + lvG ++ reaa + +vel +    ++  Gra  v+++G +g G+t  a   + +l
  KIR66175.1 850 GELVGGEAVREAAaATLVELCRlrgRQRSIGRAgnVVITGRRGDGRTEYARHYAAAL 906
                 579*******986256889986433456667866699*********98876655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1089 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 6930.32
//
Query:       KIR66176.1  [L=826]
Description: hypothetical protein TK50_13330 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 5812.07
//
Query:       KIR66177.1  [L=220]
Description: hypothetical protein TK50_13335 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-18   64.2   0.0      1e-17   63.4   0.0    1.3  1  GerE          Bacterial regulatory proteins, luxR family
    5.1e-16   58.8   0.0    7.1e-16   58.4   0.0    1.2  1  Response_reg  Response regulator receiver domain
    7.6e-05   22.1   0.0    0.00015   21.3   0.0    1.4  1  Sigma70_r4    Sigma-70, region 4
     0.0001   21.9   0.0    0.00018   21.1   0.0    1.4  1  Sigma70_r4_2  Sigma-70, region 4
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.043   13.6   0.0    1.6  1  HTH_38        Helix-turn-helix domain
      0.028   14.0   0.0      0.084   12.5   0.0    1.8  1  HTH_24        Winged helix-turn-helix DNA-binding
      0.038   14.5   0.0      0.066   13.7   0.0    1.4  1  HTH_40        Helix-turn-helix domain
       0.04   14.0   0.0       0.11   12.6   0.0    1.8  1  HTH_20        Helix-turn-helix domain
       0.06   13.2   0.0       0.18   11.6   0.0    1.8  1  HTH_23        Homeodomain-like domain
       0.09   12.2   0.0       0.21   11.0   0.0    1.6  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   5.6e-21     1e-17       3      55 ..     161     213 ..     160     215 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 5.6e-21
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvr 55 
                 Ls+RE+evL ll +G++n  I+++l++ ekTVk+h+ +++ KL+v++r+e+v 
  KIR66177.1 161 LSRREQEVLDLLGTGLTNAAIGRRLGLTEKTVKNHLNHVFAKLGVQNRTEAVL 213
                 9**************************************************96 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   3.9e-19   7.1e-16       2     111 ..       5     113 ..       4     114 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 3.9e-19
                   EEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   2 livdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   ++vdD+p+vr+++r +l   ++++ v+ea+dg+eal+l+ + ++++ llD +mp  dGl ++  + ++    ++++lt+ ++  ++  +l+ ga ++
    KIR66177.1   5 VVVDDNPIVRAAVRGFLAaASDVRIVGEASDGREALRLVTSLRPHVTLLDYRMPVADGLSVVGDLSAHT---RILALTSDTDPGTVSGMLRGGAGGY 98 
                   69****************889**9*****************************************9965...************************* PP

                   EES.SG-HHHHHHHH CS
  Response_reg  98 lsK.pfdpeeLlkal 111
                   l+  +f+p++Ll+a+
    KIR66177.1  99 LVWgQFRPDDLLDAV 113
                   975266888888876 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   8.1e-08   0.00015       5      48 ..     161     203 ..     159     204 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8.1e-08
                 S-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   5 LpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 L+ re+evl l  g glT + Ig+rlg+++ +V+ +++  + kL
  KIR66177.1 161 LSRREQEVLDLL-GTGLTNAAIGRRLGLTEKTVKNHLNHVFAKL 203
                 999******995.9***********************9999998 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   9.9e-08   0.00018      11      54 .]     161     203 ..     160     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 9.9e-08
                   S-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  11 LperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   L+ r++e++ l    gl+ + I ++lg++e+tVk++l    +kL
    KIR66177.1 161 LSRREQEVLDL-LGTGLTNAAIGRRLGLTEKTVKNHLNHVFAKL 203
                   88999999999.689**********************8776665 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.4e-05     0.043      14      41 ..     169     196 ..     163     198 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.4e-05
      HTH_38  14 erllaeGlslreIArrLgrspsTIsREl 41 
                  +ll  Gl++++I+rrLg    T+ ++l
  KIR66177.1 169 LDLLGTGLTNAAIGRRLGLTEKTVKNHL 196
                 678889******************9988 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.7e-05     0.084      17      39 ..     175     197 ..     162     198 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.7e-05
      HTH_24  17 risqreLAerlglSpstvnrrlk 39 
                 +++++ + +rlgl+  tv+ +l+
  KIR66177.1 175 GLTNAAIGRRLGLTEKTVKNHLN 197
                 79******************997 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.7e-05     0.066       3      37 ..     166     200 ..     164     211 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.7e-05
      HTH_40   3 eetlelleeglsieeIAkerglkesTIegHLaeli 37 
                 +e l+ll  gl+ ++I ++ gl+e+T+ +HL +  
  KIR66177.1 166 QEVLDLLGTGLTNAAIGRRLGLTEKTVKNHLNHVF 200
                 678999*************************8765 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     6e-05      0.11      14      46 ..     167     197 ..     161     204 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6e-05
                 HHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHH CS
      HTH_20  14 rilraLaraegltaselaerldlskntlsyHLr 46 
                 ++l++L  + glt +++ +rl+l+ +t+ +HL+
  KIR66177.1 167 EVLDLL--GTGLTNAAIGRRLGLTEKTVKNHLN 197
                 699999..************************6 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0001      0.18       7      36 ..     165     194 ..     155     199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
      HTH_23   7 RlrillllaeGlsvreIAreLgvsrrTvyr 36 
                  +++l ll  Gl+ ++I r+Lg ++ Tv +
  KIR66177.1 165 EQEVLDLLGTGLTNAAIGRRLGLTEKTVKN 194
                 5678888889******************87 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.21      17      50 ..     165     198 ..     163     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
  HTH_Tnp_ISL3  17 eayilelllesrsvkavArqlgvSwtTVwrildr 50 
                   e+ +l ll  + + +a+ r+lg++++TV++ l++
    KIR66177.1 165 EQEVLDLLGTGLTNAAIGRRLGLTEKTVKNHLNH 198
                   788999999*******************986665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1514.24
//
Query:       KIR66178.1  [L=281]
Description: hypothetical protein TK50_13345 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1983.65
//
Query:       KIR66179.1  [L=4923]
Description: hypothetical protein TK50_13370 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.5e-06   25.2   0.0       0.11   11.8   0.0    3.4  4  ART             NAD:arginine ADP-ribosyltransferase
    0.00021   20.7   0.0       0.56    9.5   0.0    2.9  3  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
  ------ inclusion threshold ------
      0.028   14.7   0.0         15    6.0   0.0    4.0  5  BLOC1_2         Biogenesis of lysosome-related organelles com
      0.039   13.9   0.2       0.11   12.4   0.2    1.8  1  SCO1-SenC       SCO1/SenC
        8.6    6.7  11.9        7.3    6.9   0.1    5.3  6  DUF948          Bacterial protein of unknown function (DUF948


Domain annotation for each model (and alignments):
>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.1     4e+03      42      82 ..    1500    1539 ..    1481    1547 .. 0.62
   2 !    8.2   0.0   0.00037       1.3     132     205 ..    1672    1747 ..    1659    1763 .. 0.73
   3 ?   -0.2   0.0      0.14   5.2e+02      57      80 ..    2740    2761 ..    2712    2769 .. 0.76
   4 !   11.8   0.0     3e-05      0.11     142     216 ..    2899    2984 ..    2891    2988 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.1
         ART   42 eqakkkwkerkakle..lpegfkdehgiAllaYtssselyrel 82  
                  +q +++w +    +   l +++ + h +Al ++t+s    ++l
  KIR66179.1 1500 KQLTQEWLNFNSVDPkaLANRLTRAHLLALQVWTGS---NHSL 1539
                  3445556655544445688999************99...3333 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00037
         ART  132 glrfsrakkgksvRfgqFtssslkkkvaeefgqdtllsik..tclgvpIkefskfpsedevLIppfevFkvtnlsk 205 
                  g  ++  + ++  R++  +   l+k   +   + +l+ i+     g +I +fs +p e+evL  p   F vt  + 
  KIR66179.1 1672 GDDLTLSGLNSASRDERVAQGILAKYTNSATSHRVLIGIElaGHAGRDITPFSAKPTEQEVLFLPGARFVVTSREI 1747
                  55566667777777777777777777766777777776652156899**********************9998443 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.14
         ART   57 lpegfkdehgiAllaYtssselyr 80  
                  l  ++   h++Al aYt+s   + 
  KIR66179.1 2740 LTRQLTPAHFTALQAYTGS--NHS 2761
                  66788999*********99..333 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 3e-05
         ART  142 ksvRfgqFtssslkkkvae.........efgqdtll..siktclgvpIkefskfpsedevLIppfevFkvtnlskeegkskiqLrs 216 
                  + + fg   s+s + +vae            + +ll  ++    g +I ++s  p+e+evL  p   F+v+  + ++++ +i  r+
  KIR66179.1 2899 TEITFGSLSSASRRSRVAEeflaghtadGTSHPVLLemQLDGHAGRDITPLSAEPDEQEVLFLPGARFEVVSRTTNDQYEHIVVRE 2984
                  56678888888888888885555544322223344422577899****************************99999999998877 PP

>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0     0.001       3.7     140     191 ..    1713    1759 ..    1688    1762 .. 0.79
   2 ?   -0.4   0.0      0.17   6.1e+02       9      36 ..    2737    2764 ..    2733    2766 .. 0.88
   3 !    9.5   0.0   0.00016      0.56     129     175 ..    2929    2974 ..    2891    2987 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.001
                      TTSBEEE-CCCSSSGCG-EEEE-TTEEEEEEEEEEE...SGGGTTSSEEEEE CS
  ADPrib_exo_Tox  140 kgsegayisplslypgeaEvLlprgltykinkitlveandgtskgkekliid 191 
                       g  g +i p+s++p+e+EvL+  g  + ++++++ e       g ek+++ 
      KIR66179.1 1713 AGHAGRDITPFSAKPTEQEVLFLPGARFVVTSREIDE-----AAGIEKIMMR 1759
                      489999************************9999865.....7777777665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.17
                      HHHHHHTS-HHHHHHHHHHCCTTHHHHH CS
  ADPrib_exo_Tox    9 ykklkekltssekeaireYtgsgysdIN 36  
                      +  l ++lt++   a++ Ytgs+ s +N
      KIR66179.1 2737 TRALTRQLTPAHFTALQAYTGSNHSLLN 2764
                      567899*****************99998 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00016
                      TTSEEEEEEE-TTSBEEE-CCCSSSGCG-EEEE-TTEEEEEEEEEEE CS
  ADPrib_exo_Tox  129 greilleltvpkgsegayisplslypgeaEvLlprgltykinkitlv 175 
                        ++lle++++ g  g +i pls++p+e+EvL+  g  +++ ++t++
      KIR66179.1 2929 SHPVLLEMQLD-GHAGRDITPLSAEPDEQEVLFLPGARFEVVSRTTN 2974
                      33899999986.99*******************99*99999777763 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.3   1.5e+04      60      91 ..    1775    1806 ..    1769    1807 .. 0.67
   2 ?   -0.3   0.0      0.38   1.4e+03      21      80 ..    1896    1955 ..    1883    1958 .. 0.85
   3 ?    6.0   0.0    0.0041        15       8      76 ..    1999    2067 ..    1994    2072 .. 0.91
   4 ?   -2.5   0.0       1.8   6.6e+03      34      86 ..    3015    3067 ..    3009    3070 .. 0.82
   5 ?    2.3   0.0     0.056     2e+02      36      76 ..    3410    3450 ..    3387    3457 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.3
     BLOC1_2   60 lqpylqqidqiekqvteLeeavseLDeyskeL 91  
                   +  + ++  + + v++L eav  L e +++L
  KIR66179.1 1775 AKRSIAEVSGLGTAVRSLAEAVPPLAEQVRAL 1806
                  45556667777777888888887777776665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.38
     BLOC1_2   21 dyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeea 80  
                    ++Le++ ++a +   +l ++   l + ++++++   ++++  + +d ie+ vt+L +a
  KIR66179.1 1896 AHDILEAMEHEALATSRALGQAQHVLFTAFHATESGPRTIDEAGRAVDTIEDGVTQLAAA 1955
                  5678889999999999999999999999999999999999999*************9875 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0041
     BLOC1_2    8 skyleaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvte 76  
                   + l  ++ + ++d++l+e+   +a+ ++ + +++++ +++ + +++++y+  q++ + id++ ++++ 
  KIR66179.1 1999 HAHLPTQIRGLADDLRLVETAVANAEWEIGSADSALDAVRSLAGQIDARYARSQELARLIDELLDDLDV 2067
                  556777889999**************************************************9888765 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.8
     BLOC1_2   34 ekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDe 86  
                  + ++ ++d +a +++++ ++++  + + p  +++ ++ +q ++    +++LDe
  KIR66179.1 3015 RTVDTVTDLTAAATRTAAQVDKAAADVGPPHRRVADLARQARTTLGEAKALDE 3067
                  55778899999999999999999999999999999999998888888888887 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.056
     BLOC1_2   36 ykklkdvaaslekkleklnekyeelqpylqqidqiekqvte 76  
                   +  + +++++++++e+l +  ++++p + q+dq  k+vte
  KIR66179.1 3410 LATAAGSLDGARETAERLHAYAASVHPAVAQLDQAAKDVTE 3450
                  556677889999********999**************9997 PP

>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   3.1e-05      0.11      46     114 ..    3398    3467 ..    3392    3486 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.1e-05
   SCO1-SenC   46 evldalgeeaekvqplfiTvDPerDtpevlkeyleafdpriigltGskeeiakaake.frvyvekvedee 114 
                  +++da+  +++++     ++D +r t e+l++y+++++p + +l    +++++a+ e  r++++  +  +
  KIR66179.1 3398 AAQDAVSRTEKALATAAGSLDGARETAERLHAYAASVHPAVAQLDQAAKDVTEATAEvARAQAAARDGAA 3467
                  68899999999***********************************999999999885666655555544 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.051   1.8e+02      24      61 ..    1785    1822 ..    1745    1830 .. 0.84
   2 ?   -2.5   0.0       1.8   6.4e+03      23      65 ..    1850    1898 ..    1841    1905 .. 0.57
   3 ?   -3.7   0.0       4.3   1.5e+04      26      45 ..    1933    1952 ..    1921    1959 .. 0.73
   4 ?    6.9   0.1     0.002       7.3      21      83 ..    2992    3054 ..    2985    3058 .. 0.85
   5 ?   -2.1   0.2       1.3   4.7e+03      27      46 ..    3139    3158 ..    3102    3191 .. 0.59
   6 ?    0.3   0.1      0.23   8.4e+02      33      70 ..    3422    3455 ..    3392    3471 .. 0.48

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.051
      DUF948   24 lkktldeaaatieelekqvdpilkevedllakvnelle 61  
                  l+  ++++a+++  l +qv++++ e++++la+ ++ll+
  KIR66179.1 1785 LGTAVRSLAEAVPPLAEQVRALTPELTAALATFRDLLD 1822
                  57778888888888899999999999999999988887 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.8
      DUF948   23 klkktldeaaatieele......kqvdpilkevedllakvnelledvne 65  
                    ++t+ +a a++++le       ++++i++e+e++ a   +  ed ++
  KIR66179.1 1850 AYENTIANAWAAVRDLEdraqdpGNARAIVTEAERIWADLHQAGEDAHD 1898
                  5578888999999999944444444455555555555555544444444 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 4.3
      DUF948   26 ktldeaaatieelekqvdpi 45  
                  +t+dea ++++++e+ v+++
  KIR66179.1 1933 RTIDEAGRAVDTIEDGVTQL 1952
                  57777777777777766655 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.002
      DUF948   21 llklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlges 83  
                  l     t+++a   ++++++ ++ +++ v+dl+a + +++++v +  ++v p    vadl+++
  KIR66179.1 2992 LHTFDTTAEHALFELTGIGRSIERTVDTVTDLTAAATRTAAQVDKAAADVGPPHRRVADLARQ 3054
                  5555667777777889999*********************************99999999876 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 1.3
      DUF948   27 tldeaaatieelekqvdpil 46  
                  +ld+a+++ +++ +++ +++
  KIR66179.1 3139 LLDRATRHAADVASRAAAYT 3158
                  33333333333333333333 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 0.23
      DUF948   33 atieelekqvdpilkevedllakvnelledvneklekv 70  
                  +t     ++++++   v+ ++a+  + ++dv+e +++v
  KIR66179.1 3422 ETA----ERLHAYAASVHPAVAQLDQAAKDVTEATAEV 3455
                  222....2222222222222333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4923 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       920  (0.0513135); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.94u 0.30s 00:00:02.23 Elapsed: 00:00:00.54
# Mc/sec: 27446.04
//
Query:       KIR66180.1  [L=265]
Description: hypothetical protein TK50_13375 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.067   13.7   0.0       0.13   12.8   0.0    1.5  1  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d


Domain annotation for each model (and alignments):
>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     7e-06      0.13       1      94 [.       1      96 [.       1     104 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7e-06
  T7SS_ESX_EspC  1 mtdnLsVdpdhlrelaakhdevaaeiasavaaaagasaavldshGp..icaatndavaaaeaarraagealaaasteLadkLraAAaaYeatDeea 94
                   m+++L Vdp+ l +l++++++ a+  ++++a          +s G   +++++++ + a + a +  + a a++++  ad L+++ +++  +D++a
     KIR66180.1  1 MSGDLFVDPEGLGRLGDQYRGRADAFRQLQAYIEALRHTYGTSWGNddLGQQFAAKFVAGLLALENIVGAAADTLDYTADGLTVSGTTFRGADDDA 96
                   899*************************99999777777777777544788999999999999999999999999999999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1924.70
//
Query:       KIR66181.1  [L=138]
Description: hypothetical protein TK50_13380 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-09   37.4   0.0    2.7e-09   37.1   0.0    1.1  1  YbaB_DNA_bd  YbaB/EbfC DNA-binding family


Domain annotation for each model (and alignments):
>> YbaB_DNA_bd  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   1.5e-13   2.7e-09       2      90 ..      12     101 ..      11     102 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.5e-13
                  HHHHHHHHHHHHHHHHHTTSEEEEEETTTTEEEEEETT--EEEEEE-GGGG.GS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.--X CS
  YbaB_DNA_bd   2 kqaqkmqkkmeeaqeelaekevegssggglVkVtvngkgevksikIdpslldpedkemLedlivaAvndAlkkaeeeaeeemsklt.ggl 90 
                  ++ q+ +  + ++ +++ ++ v+ +s    V+Vtv  +g v +i++  ++     +  L  l+++A+ +A+++a+ +a++ +++l+ +gl
   KIR66181.1  12 QRYQQQRDGLGALRRRMRSIAVTRTSPRREVSVTVGHNGVVSDITFPTNAYRRLAPAELRTLLMQAIGEAREEAQSQAAAVIAPLLpDGL 101
                  56799999999***********************************999966555667************************99984466 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1062.77
//
Query:       KIR66182.1  [L=106]
Description: hypothetical protein TK50_13385 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-14   53.8   7.2    2.6e-14   53.2   7.2    1.3  1  WXG100     Proteins of 100 residues with WXG
     0.0031   17.8   0.2     0.0037   17.5   0.2    1.1  1  DUF5082    Domain of unknown function (DUF5082)
     0.0032   17.6   1.1     0.0032   17.6   1.1    1.7  2  RPN13_C    UCH-binding domain
  ------ inclusion threshold ------
       0.03   15.0   1.1       0.56   10.9   1.1    2.0  1  AATF-Che1  Apoptosis antagonizing transcription factor
       0.03   13.5   0.3      0.036   13.2   0.2    1.3  1  DUF2232    Predicted membrane protein (DUF2232)
      0.051   14.0   1.2        3.9    8.0   0.0    2.1  2  ZapA       Cell division protein ZapA
      0.052   13.1   0.2      0.058   12.9   0.2    1.1  1  FAP206     Domain of unknown function
      0.095   12.4   0.3       0.12   12.1   0.3    1.1  1  GrpE       GrpE


Domain annotation for each model (and alignments):
>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   7.2   1.1e-17   2.6e-14       2      85 ..       6      89 ..       5      90 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 1.1e-17
                HCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  2 ikvdpeelrqaaarfqkqaeeledelqrlkaevdalqsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaanafedaD 85
                ++++   ++qaa++f++ aee ++ l++++ ++  lq++W G+a+ +f+++++ w +a+qk++++L +i ea+  ++++++ a+
  KIR66182.1  6 VQTNEPGMQQAAQEFASRAEEFTTHLRNVNDQMGMLQASWTGEASAQFNSAMDAWENAFQKVINELLTIMEAMGVNTQSYSAAE 89
                6788889**************************************************************************998 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   1.6e-06    0.0037      31     103 ..      15      88 ..      12     103 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.6e-06
     DUF5082  31 eaktklsdekeslkqkkkkle.kplnssesWkGkeennydgirsnlessyqtyvdkldelidaieeEIerLenq 103
                 +a ++  +  e++ ++ ++++ ++ + ++sW+G+++++++++    e + q+++ +l +++ a+   ++ +   
  KIR66182.1  15 QAAQEFASRAEEFTTHLRNVNdQMGMLQASWTGEASAQFNSAMDAWENAFQKVINELLTIMEAMGVNTQSYSAA 88 
                 45555556666666666666625677888***********************************9999887665 PP

>> RPN13_C  UCH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.61   1.4e+03      68      92 ..      14      40 ..       7      49 .. 0.52
   2 !   17.6   1.1   1.4e-06    0.0032      64     112 .]      50     103 ..      48     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.61
     RPN13_C 68 rqalsslsqALqs..gqlgpvlsqlgL 92
                +qa +++ +  ++    l++v +q+g+
  KIR66182.1 14 QQAAQEFASRAEEftTHLRNVNDQMGM 40
                555555543332112344455555554 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.4e-06
     RPN13_C  64 SPqfrqalsslsqALqs..gqlgpvlsqlgLdee...avaaaakggveaFlkAl 112
                 S+qf++a+++ ++A+q+  ++l ++++++g++++   a++ +a+++  +F++Al
  KIR66182.1  50 SAQFNSAMDAWENAFQKviNELLTIMEAMGVNTQsysAAEDEASSTAASFAQAL 103
                 9**************99999*************977777778888899999996 PP

>> AATF-Che1  Apoptosis antagonizing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.1   0.00025      0.56      47      83 ..      36      86 ..       1     102 [. 0.60

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00025
   AATF-Che1 47 s.............seefeealeeaekalkklleslleLreelleqne.ik 83
                +             s++f++a+++ e+a +k++++ll++ e++  + +  +
  KIR66182.1 36 DqmgmlqaswtgeaSAQFNSAMDAWENAFQKVINELLTIMEAMGVNTQsYS 86
                033344444555557788888899999999999999999999933333222 PP

>> DUF2232  Predicted membrane protein (DUF2232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   1.6e-05     0.036     114     163 ..      56     105 ..      38     106 .] 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
     DUF2232 114 llaqvekeikesveealklyeeaGmsedelkelqklleeevslllrllPa 163
                  ++  e++++++++e l+++e++G++++  ++ ++   + + ++ + lP+
  KIR66182.1  56 AMDAWENAFQKVINELLTIMEAMGVNTQSYSAAEDEASSTAASFAQALPG 105
                 488999*******************9988888888888889999999997 PP

>> ZapA  Cell division protein ZapA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0017       3.9      18      49 ..       9      40 ..       2      47 .. 0.86
   2 ?    5.4   0.2     0.011        25      24      68 ..      48      93 ..      46     103 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0017
        ZapA 18 eeeylreaaklvdekikeireaggnlseerll 49
                 e+ +++aa+++ ++++e++   +n+++++ +
  KIR66182.1  9 NEPGMQQAAQEFASRAEEFTTHLRNVNDQMGM 40
                5889*********************9999755 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.011
        ZapA 24 eaaklvdekikeireaggnlseerllvmaaLnladellkl.kkrae 68
                ea +++++ ++++++a++++ +e l++m a+ +  +  ++ +++a+
  KIR66182.1 48 EASAQFNSAMDAWENAFQKVINELLTIMEAMGVNTQSYSAaEDEAS 93
                678999************99999999**777555544444044433 PP

>> FAP206  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   2.6e-05     0.058      72     144 ..      14      88 ..       7     103 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.6e-05
      FAP206  72 eksaeeveellkrfeaeleklketvksktavpkeqVyPkFialaelWselqdel..ellsvlsnllesLqqflas 144
                 +++a+e+ +  ++f ++l+++++ +++ +a  + +   +F++  ++W+++ +++  ell +++ +  + q+++a+
  KIR66182.1  14 QQAAQEFASRAEEFTTHLRNVNDQMGMLQASWTGEASAQFNSAMDAWENAFQKVinELLTIMEAMGVNTQSYSAA 88 
                 6899********************************************998864224555555555555665543 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   5.2e-05      0.12      11      89 ..      14      92 ..       6     103 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.2e-05
                HHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC..HHH-HH CS
        GrpE 11 edeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfaiekfakdLLpvlDnleralksakeneeek 89
                +++ +e  ++ ee+ + ++++++++  l+a +        + + +a + a +k++++LL +++++   ++s +++e+e 
  KIR66182.1 14 QQAAQEFASRAEEFTTHLRNVNDQMGMLQASWTGEASAQFNSAMDAWENAFQKVINELLTIMEAMGVNTQSYSAAEDEA 92
                5667777888999999*****************6666666677788999***************999999888555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 684.90
//
Query:       KIR66183.1  [L=100]
Description: hypothetical protein TK50_13390 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-10   40.7   6.6    2.3e-10   40.5   6.6    1.1  1  WXG100         Proteins of 100 residues with WXG
  ------ inclusion threshold ------
       0.13   12.4   0.1        1.8    8.7   0.0    2.1  2  FeThRed_A      Ferredoxin thioredoxin reductase variable alph
       0.16   12.4   6.1       0.21   12.1   6.1    1.1  1  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d


Domain annotation for each model (and alignments):
>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   6.6   3.9e-14   2.3e-10       2      86 .]       4      88 ..       3      88 .. 0.97

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 3.9e-14
                HCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
      WXG100  2 ikvdpeelrqaaarfqkqaeeledelqrlkaevdalqsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaanafedaDe 86
                ++ ++ + +++ +++++++++++++l+++++ v+   + W Gaa++++q   + w++aa+++  aL++ +++l ++a+++  +++
  KIR66183.1  4 YRFSFTQADATLTDMNGINGRITSALAEMEGNVERTLAEWTGAAQEQYQVSKAAWNAAAAQMTVALDSARQTLLSIADNYGTTEQ 88
                67789999************************************************************************99997 PP

>> FeThRed_A  Ferredoxin thioredoxin reductase variable alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0022        13      23      42 ..      15      34 ..       6      35 .. 0.83
   2 ?    8.7   0.0   0.00031       1.8      26      43 ..      29      46 ..      26      54 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0022
                -EE-TT-EEEEEEE-SEETT CS
   FeThRed_A 23 aldlkgmeGevvqivtewkG 42
                 +d++g++G +++ ++e +G
  KIR66183.1 15 LTDMNGINGRITSALAEMEG 34
                57*************99998 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00031
                -TT-EEEEEEE-SEETTE CS
   FeThRed_A 26 lkgmeGevvqivtewkGr 43
                l +meG+v+ +++ew G 
  KIR66183.1 29 LAEMEGNVERTLAEWTGA 46
                789*************95 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   6.1   3.5e-05      0.21      18      96 ..      17      92 ..      13      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
  T7SS_ESX_EspC 18 khdevaaeiasavaaaagasaavldshGpicaatndavaaaeaarraagealaaasteLadkLraAAaaYeatDeeaag 96
                   +++++ ++i+sa+a +     +v  +   ++ a +   +  +aa +aa++++  a++  ++ L + A++Y  t+++aa+
     KIR66183.1 17 DMNGINGRITSALAEM---EGNVERTLAEWTGAAQEQYQVSKAAWNAAAAQMTVALDSARQTLLSIADNYGTTEQNAAK 92
                   67889999********...5555566666*********************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       976  (0.0544369); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 771.00
//
Query:       KIR66184.1  [L=260]
Description: hypothetical protein TK50_13395 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2046.99
//
Query:       KIR66185.1  [L=365]
Description: hypothetical protein TK50_13405 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       177  (0.00987227); expected 358.6 (0.02)
Passed bias filter:                       77  (0.00429472); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2776.75
//
Query:       KIR66186.1  [L=114]
Description: hypothetical protein TK50_13410 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       914  (0.0509789); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 866.41
//
Query:       KIR66187.1  [L=1322]
Description: secretion protein EccC [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-91  305.3   0.0      5e-52  176.7   0.0    5.6  5  FtsK_SpoIIIE     FtsK/SpoIIIE family
      1e-11   45.5   2.2      0.021   15.2   0.2    3.8  3  AAA_16           AAA ATPase domain
    1.3e-07   32.0   0.0      0.033   14.5   0.0    4.0  3  AAA_22           AAA domain
    5.7e-06   26.4   0.0        0.3   11.0   0.0    4.0  3  NACHT            NACHT domain
    2.2e-05   24.6   0.1      0.038   14.1   0.1    3.1  3  DUF87            Helicase HerA, central domain
    6.9e-05   22.5   0.3       0.18   11.6   0.1    3.3  3  AAA_29           P-loop containing region of AAA domain
    0.00014   21.9   0.0       0.11   12.6   0.0    2.8  2  MMR_HSR1         50S ribosome-binding GTPase
     0.0004   19.4   0.2       0.41    9.5   0.0    3.0  3  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
    0.00075   19.9   0.0       0.28   11.5   0.0    3.4  3  AAA_19           AAA domain
     0.0025   18.0   0.3        5.5    7.1   0.0    3.6  3  AAA_33           AAA domain
     0.0038   17.6   0.0         15    6.0   0.0    3.4  3  RNA_helicase     RNA helicase
     0.0039   16.2   0.0        2.2    7.1   0.0    2.5  2  AAA_10           AAA-like domain
     0.0053   17.3   0.4        1.8    9.1   0.0    2.5  2  ABC_tran         ABC transporter
  ------ inclusion threshold ------
      0.011   14.9   0.0       0.16   11.1   0.0    2.3  2  DUF815           Protein of unknown function (DUF815)
      0.011   15.3   6.3          1    8.9   0.0    3.8  4  AAA_25           AAA domain
      0.017   13.9   0.1       0.78    8.5   0.0    2.3  2  Adeno_IVa2       Adenovirus IVa2 protein
      0.027   14.7   0.1      0.081   13.2   0.1    1.7  1  MID_pPIWI_RE     MID domain of pPIWI_RE
      0.029   14.9   0.0        9.1    6.8   0.0    2.5  2  AAA_18           AAA domain
      0.031   14.0   0.1        9.2    5.9   0.0    2.3  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.045   12.7   0.5       0.17   10.9   0.0    1.9  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.067   11.8   0.1       0.23   10.0   0.1    1.8  2  DUF853           Bacterial protein of unknown function (DUF85
      0.099   11.9   1.2         13    5.0   0.1    3.5  3  Zeta_toxin       Zeta toxin
       0.18   11.2   0.7        1.4    8.3   0.2    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
        0.2   11.4   0.7        1.5    8.6   0.1    2.3  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.19   1.4e+02      57     109 ..     229     282 ..     225     293 .. 0.81
   2 !  102.1   0.0     4e-32     3e-29      12     187 ..     436     624 ..     428     628 .. 0.93
   3 !  176.7   0.0   6.6e-55     5e-52      16     241 ..     807    1040 ..     802    1041 .. 0.95
   4 !   13.8   0.0   3.7e-05     0.028      22      75 ..    1095    1148 ..    1083    1153 .. 0.79
   5 ?   -0.3   0.0      0.72   5.4e+02     147     190 ..    1209    1258 ..    1184    1272 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.19
                   HHHHHHHHTT--TTTEEEEEE-TTSS..SCGGGTT-TTBSS.S-B-SHHHHHHHH CS
  FtsK_SpoIIIE  57 ntLilSlatthtPeeVqliliDykgv..elsalediphllsvavatdperalral 109
                   +++++ lat h+P+e++  +++  +   e   ++ +ph ++ + a d+   +r++
    KIR66187.1 229 RAMLAQLATFHAPDELRIAVLAAEEHraEWDWIKWLPHNAH-PTAHDAAGPARLF 282
                   89******************999887778888999999998.7777776666555 PP

  == domain 2  score: 102.1 bits;  conditional E-value: 4e-32
                   HT---TTEEEEEEETTS-EEEEEGGGS-......SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS.SCGGGTT-TTBSS...S-B- CS
  FtsK_SpoIIIE  12 rtessqlpvalgkeisgnplvldlkkma.....shllvaGatgsGKStalntLilSlatthtPeeVqliliDykgv.elsalediphlls..vavat 100
                   + ++s+l+v +g+   g++++ldlk++a     +h+l++GatgsGKS+ l+tL+++la+th+ e ++l+l+D+kg+ ++  +e++ph+ +  ++ a+
    KIR66187.1 436 QPQRSRLTVPIGVTADGEVIELDLKESAqggmgPHGLLIGATGSGKSELLRTLVCALAATHSSEILNLVLVDFKGGaTFLGMERLPHTSAviTNLAD 532
                   4567899999999999************************************************************************99889**** PP

                   SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHH.HHHHHHHHHHTT---B-TT-..........................-----------B CS
  FtsK_SpoIIIE 101 dperalraleeLvkemeeryalfreagvrsiaa.ydgeiaedpldifgdvflvlDnyddlaaene....ritsLsnqgpsygvhvlvtagre 187
                   +   + r+ ++L  e+ +r++++r++g +s+ +  ++ +a +pl+ f+++ +v+D+ ++l   +       +s+   g s gvh+l++++r 
    KIR66187.1 533 ELPLVDRMQDALNGELTRRQEVLRASGHASLFDyEKARAAGAPLVPFPVLLVVVDEFSELLSSKSefmdLFVSIGRLGRSLGVHLLLASQRL 624
                   *********************************556677889****************9987776699999***************998875 PP

  == domain 3  score: 176.7 bits;  conditional E-value: 6.6e-55
                    -TTEEEEEEETTS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSSCGGGTT-TTBSS.S-B-SHHHHHHHHH CS
  FtsK_SpoIIIE   16 sqlpvalgkeisgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgvelsalediphllsvavatdperalrale 110 
                    + ++v++++++ ++ +v+dl+++ +h+ vaGa++sGKSt l+tLilSla+thtPee q + +D++g+ l+a+ ++ph++sva + + +r++r++e
    KIR66187.1  807 PVGIVDRPQDQLRELFVADLSGADGHVGVAGAPQSGKSTLLRTLILSLAVTHTPEEAQIYGLDFSGGGLAAVAGLPHVGSVATRLERDRVVRTVE 901 
                    567899***************************************************************************************** PP

                    HHHHHHHHHHHHHHHTT-SSHHH.HHHHHHHHHHTT---B-TT-..........................-----------B-----EEEEEEC- CS
  FtsK_SpoIIIE  111 eLvkemeeryalfreagvrsiaa.ydgeiaedpldifgdvflvlDnyddlaaene....ritsLsnqgpsygvhvlvtagrelekrpslvvivde 200 
                    e+ + +e+r+a f e+g++s+a    + +a +++d fg vflv+D++ ++++  +    ri +L+++g+s+g+h++vta+r++e r  l+++++ 
    KIR66187.1  902 EVRQILERREAEFVERGIDSMATyLAQRAAGAIDDPFGHVFLVVDGWYTVKQDYPdleqRIGELASRGLSFGIHLVVTATRWSELRTWLRDLLGT 996 
                    ***********************6667778899*******************999999************************************* PP

                    HHHHHHHHHHH....HHHHHHHHHHHCG...GGTEEEEEEES-- CS
  FtsK_SpoIIIE  201 rieLrlaapkdssvlvedaivRlarkgr...aaglHlllatqrl 241 
                     +eLrl ++ +s+v+ ++a++ + ++gr   a+glH+l a +r+
    KIR66187.1  997 KVELRLGDSMESEVGSRKAATVPNQPGRgitADGLHFLTALPRM 1040
                    ************8888888888888877778*********9985 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 3.7e-05
                    EEEET.TS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEE CS
  FtsK_SpoIIIE   22 lgkei.sgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqli 75  
                    +g++  +  p+ +d  + + hllv G  ++GKS+al+  + ++  ++ P+e + +
    KIR66187.1 1095 VGRDEqRLAPVWHDFLTTP-HLLVFGDAETGKSNALRLVLDAVRRRYGPDEAKVV 1148
                    5555546679999999999.****************9887777777777776665 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 0.72
                    --B-TT-............................-----------B--- CS
  FtsK_SpoIIIE  147 gdvflvlDnyddlaaene......ritsLsnqgpsygvhvlvtagrelek 190 
                    + +f+v+D+yd +               L +qg + g h++v++    + 
    KIR66187.1 1209 PELFVVVDDYDLMTRGVGagstldPLLPLLAQGAYIGLHLIVARSTSGAM 1258
                    5578899999866554436777888889999*********9997766554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   2.8e-05     0.021      17     163 ..     461     608 ..     453     619 .. 0.67
   2 !   13.5   0.1   9.7e-05     0.073       7      87 ..     813     902 ..     812     971 .. 0.65
   3 !   14.1   0.0   6.2e-05     0.046       2      88 ..    1094    1182 ..    1093    1242 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.8e-05
      AAA_16  17 ervrsgrpelvllsGesGvGKsslvrellralekdg.giflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelaga 114
                 e++  g ++  ll+G+ G+GKs l+r+l  al +++    l+   ++++ +++++   ++  ++ +++ l+de    ++++ +++l ++l+  +e+ +a
  KIR66187.1 461 ESAQGGMGPHGLLIGATGSGKSELLRTLVCALAATHsSEILNLVLVDFKGGATFLGMERLPHTSAVITNLADE--LPLVDRMQDALNGELTRRQEVLRA 557
                 4556666799*****************9999998864555777777777777777777777777888888877..555778888888888844444444 PP

      AAA_16 115 ea.srllellkrllallsrderp.lvlvlDdlqwadeaslqllaaLlrlle 163
                 +   +l++  k+ +a ++    p l++v+D++  + ++  ++++++++ + 
  KIR66187.1 558 SGhASLFDYEKARAAGAPLVPFPvLLVVVDEFSELLSSKSEFMDLFVSIGR 608
                 443444444444444444433346888899988887777777777766654 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 9.7e-05
      AAA_16   7 eeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd..............ggiflrgkcdqlesa.......ipysa.laqalareellr 83 
                 + ++qL++++ +  sg  + v + G++ +GKs+l+r+l  +l  +              g             +       +p +  +a+ l+r++++r
  KIR66187.1 813 RPQDQLRELFVADLSGADGHVGVAGAPQSGKSTLLRTLILSLAVThtpeeaqiygldfsG-------------GglaavagLPHVGsVATRLERDRVVR 898
                 56799******************************9887555544233333332222221.............02222222333344555555555554 PP

      AAA_16  84 qlld 87 
                  +++
  KIR66187.1 899 TVEE 902
                 4444 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 6.2e-05
      AAA_16    2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd....ggiflrgkcdql.esaipy.salaqalareellrqllde 88  
                  +vGR+e++  L+ ++++  +   + +l+ G++ +GKs  +r +l+a++++    ++ ++ g++++  ++a+p  +++ + l+ ++l++  +++
  KIR66187.1 1094 CVGRDEQR--LAPVWHDFLTT--PHLLVFGDAETGKSNALRLVLDAVRRRygpdEAKVVLGDTRRDlDTALPAeYQVGTGLTGDKLFELAGQA 1182
                  79*****7..******99876..9********************9999998887788877777777566666655577777777777766666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.4e-05     0.033       7     126 ..     470     618 ..     466     626 .. 0.56
   2 !    7.7   0.0    0.0055       4.1       6      32 ..     831     857 ..     827     946 .. 0.79
   3 ?    4.8   0.0     0.044        33       6      35 ..    1113    1142 ..    1110    1223 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.4e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee.................erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalra 88 
                 +++++G +G+GK+ llr+l+  l +  + e                  er +  +  ++++ +   l  ++  al+ el +   ++e l++  +  l +
  KIR66187.1 470 HGLLIGATGSGKSELLRTLVCALAATHSSEIlnlvlvdfkggatflgmERLPHTSAVITNLADELPLVDRMQDALNGELTR---RQEVLRASGHASLFD 565
                 799******************995443333377777777666666555333333333334444444444444444444444...333333333333322 PP

      AAA_22  89 rav............ielliiDEaqhlr.s.eealeeLrsllnl.srkgvqli 126
                 + +            + l+++DE+  l  s  e +  ++s+  l ++ gv+l+
  KIR66187.1 566 YEKaraagaplvpfpVLLVVVDEFSELLsSkSEFMDLFVSIGRLgRSLGVHLL 618
                 22244455566688888888899888554335555555666666444455544 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0055
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldee 32 
                 g++ v G + +GK+tllr+l  +l   
  KIR66187.1 831 GHVGVAGAPQSGKSTLLRTLILSLAVT 857
                 677799**************9998544 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.044
      AAA_22    6 gilvvtGesGtGKTtllrrlleqldeeaka 35  
                   +l+v+G + tGK+  lr +l+   +++ +
  KIR66187.1 1113 PHLLVFGDAETGKSNALRLVLDAVRRRYGP 1142
                  589*****************9987555444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0    0.0004       0.3       4      37 ..     472     504 ..     471     646 .. 0.80
   2 !    9.2   0.0    0.0014       1.1       5     128 ..     835     981 ..     832    1006 .. 0.66
   3 ?   -0.2   0.0       1.1   8.5e+02       4      47 ..    1116    1158 ..    1114    1264 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0004
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEE CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpqgafklv 37 
                 +l G+ GsGK+ Ll+ l+ a+a+ +  +    lv
  KIR66187.1 472 LLIGATGSGKSELLRTLVCALAATHSSEI-LNLV 504
                 589*******************9997664.3444 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0014
                 EEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-......-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE................ CS
       NACHT   5 lqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna...rsladllfsqlpepaapvsevwavllelperlL................ 84 
                 + G++ sGK+tLl+ l+l +a  + p++a  + + +s + l          s+a+ l    +   ++v+ev+++l +++   +                
  KIR66187.1 835 VAGAPQSGKSTLLRTLILSLAVTHTPEEAQIYGLDFSGGGLAAVAGLphvGSVATRLE--RDRVVRTVEEVRQILERREAEFVergidsmatylaqraa 931
                 6678889******************998866666666555555555533334444443..334445555566666666666667777777777777777 PP

                 ...........EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEE CS
       NACHT  85 ...........lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvr 128
                            l++Dg   +++d +      +++ ++el ++ l  + +l++t++
  KIR66187.1 932 gaiddpfghvfLVVDGWYTVKQDYPD-----LEQRIGELASRGLSFGIHLVVTAT 981
                 77777777777777777777777666.....777777777777777777777654 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.1
                  EEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTT CS
       NACHT    4 ilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsr 47  
                  ++ G+a  GK+  l+ + +a ++++ p +a k+v+  + r+l +
  KIR66187.1 1116 LVFGDAETGKSNALRLVLDAVRRRYGPDEA-KVVLGDTRRDLDT 1158
                  566777778888888888887777777764.6665444444444 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   5.1e-05     0.038      25      60 ..     470     508 ..     449     522 .. 0.85
   2 ?    1.3   0.1       0.4     3e+02      25      48 ..     832     855 ..     827     862 .. 0.89
   3 ?    4.7   0.0     0.037        28      21      46 ..    1110    1135 ..    1097    1164 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.1e-05
       DUF87  25 HlAilgsTGsGKSntvavLleelle...kkgatililDp 60 
                 H + +g TGsGKS + + L+  l++   +  ++++++D 
  KIR66187.1 470 HGLLIGATGSGKSELLRTLVCALAAthsSEILNLVLVDF 508
                 88899*******************955544556667775 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.4
       DUF87  25 HlAilgsTGsGKSntvavLleell 48 
                 H+++ g   sGKS++ + L+ +l+
  KIR66187.1 832 HVGVAGAPQSGKSTLLRTLILSLA 855
                 999999999**********98876 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.037
       DUF87   21 lvtrHlAilgsTGsGKSntvavLlee 46  
                  l t Hl+++g + +GKSn  ++ l+ 
  KIR66187.1 1110 LTTPHLLVFGDAETGKSNALRLVLDA 1135
                  6689***************9998865 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   0.00024      0.18      24      48 ..     470     494 ..     453     502 .. 0.79
   2 ?    5.9   0.1     0.014        11      24      39 ..     832     847 ..     822     859 .. 0.79
   3 ?    0.5   0.0      0.68   5.1e+02      25      37 ..    1115    1127 ..    1106    1138 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
      AAA_29  24 atlltGpsGsGKSTllDAiqalLvp 48 
                   ll+G++GsGKS ll  +   L +
  KIR66187.1 470 HGLLIGATGSGKSELLRTLVCALAA 494
                 45***********999766666655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.014
      AAA_29  24 atlltGpsGsGKSTll 39 
                  + ++G+  sGKSTll
  KIR66187.1 832 HVGVAGAPQSGKSTLL 847
                 56689**********9 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.68
      AAA_29   25 tlltGpsGsGKST 37  
                   l+ G+ ++GKS 
  KIR66187.1 1115 LLVFGDAETGKSN 1127
                  7999********6 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.016        12       3      24 ..     472     493 ..     470     502 .. 0.82
   2 !   12.6   0.0   0.00014      0.11       1      24 [.     832     855 ..     832     865 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.016
                 EEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgeka 24 
                 +++G + +GKS L+++l+ + a
  KIR66187.1 472 LLIGATGSGKSELLRTLVCALA 493
                 589**************97744 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00014
                 EEEEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgeka 24 
                 +v+++G p +GKStL+++l+ + a
  KIR66187.1 832 HVGVAGAPQSGKSTLLRTLILSLA 855
                 599****************97644 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00054      0.41      17      54 ..     470     511 ..     467     521 .. 0.80
   2 ?   -0.6   0.1      0.64   4.8e+02      16      37 ..     831     852 ..     827     860 .. 0.89
   3 !    5.7   0.0     0.008         6      15      43 ..    1112    1140 ..    1105    1163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00054
  TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairarg....draivlDltGa 54 
                    h l++G+tGsGK++ l+ l+ a+ a         + +D++G 
     KIR66187.1 470 HGLLIGATGSGKSELLRTLVCALAATHsseiLNLVLVDFKGG 511
                    889****************99988877343345566777775 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.64
  TrwB_AAD_bind  16 qhilivGttGsGKtqalekllr 37 
                     h+ ++G+  sGK++ l+ l+ 
     KIR66187.1 831 GHVGVAGAPQSGKSTLLRTLIL 852
                    699***************9985 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.008
  TrwB_AAD_bind   15 tqhilivGttGsGKtqalekllrairarg 43  
                     t h+l++G + +GK++al+  l+a+r+r 
     KIR66187.1 1112 TPHLLVFGDAETGKSNALRLVLDAVRRRY 1140
                     679***********************996 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00038      0.28      11     116 ..     469     594 ..     460     606 .. 0.66
   2 ?    3.3   0.0      0.12        93      11      47 ..     831     867 ..     824     877 .. 0.84
   3 ?   -0.3   0.0       1.6   1.2e+03       9      41 ..    1111    1143 ..    1106    1156 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00038
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal.........ldfddlltealelle........ 92 
                 ++ l+++  G+GK+++l++ v  l ++++ +  +++lv f g A+    erl    +    i +la           +++++lt   e+l+        
  KIR66187.1 469 PHGLLIGATGSGKSELLRTLVCALAATHSSEILNLVLVDFKGGATFLGMERLP---HTSAVITNLADelplvdrmqDALNGELTRRQEVLRasghaslf 564
                 6779*************************************999988888883...3333344443344445555523333333333333366666666 PP

      AAA_19  93 .....eaeeekkl.qeee.llivDEfqdvde 116
                      + +   +l      l++vDEf+++  
  KIR66187.1 565 dyekaR-AAGAPLvPFPVlLVVVDEFSELLS 594
                 665532.333333033445888899988765 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.12
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeill 47 
                 +++ v + p +GK+++l++ +  l  +++ + ++i+ 
  KIR66187.1 831 GHVGVAGAPQSGKSTLLRTLILSLAVTHTPEEAQIYG 867
                 678899***************9999999877777765 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.6
      AAA_19    9 kekvllvtaGpGtGKTrvlkhivallvelggvk 41  
                  + ++llv + + tGK+  l+ ++  + ++ g +
  KIR66187.1 1111 TTPHLLVFGDAETGKSNALRLVLDAVRRRYGPD 1143
                  567899*************99999888877654 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       1.4   1.1e+03      56      79 ..     108     141 ..      87     156 .. 0.65
   2 !    7.1   0.0    0.0074       5.5       3      27 ..     472     496 ..     472     550 .. 0.93
   3 ?    5.8   0.0     0.019        14       4      39 ..     835     898 ..     833     995 .. 0.57

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.4
      AAA_33  56 yqilnelarkalsagrn.vildat.........n 79 
                   +l++ arka+ + r+ v++d++         +
  KIR66187.1 108 VTQLRRQARKAANQHRQaVLWDNPqpdtlwsvaM 141
                 3478899999985555538889985555444433 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0074
      AAA_33   3 llvGlpGsGKstlaerllkklgavl 27 
                 ll+G+ GsGKs l++ l+ +l+a++
  KIR66187.1 472 LLIGATGSGKSELLRTLVCALAATH 496
                 589**************98887655 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.019
      AAA_33   4 lvGlpGsGKstlaerllkklgavllssdt............................lrrrlfg 39 
                 + G+p sGKstl++ l+  l++++  + +                            +r+r++ 
  KIR66187.1 835 VAGAPQSGKSTLLRTLILSLAVTHTPEEAqiygldfsggglaavaglphvgsvatrlERDRVVR 898
                 579999**********977776665555566666667777777777777777666664444444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.033        25       3      26 ..     473     496 ..     472     514 .. 0.85
   2 ?    6.0   0.0      0.02        15       3      35 ..     835     866 ..     833     871 .. 0.81
   3 ?    1.7   0.0      0.43   3.2e+02       2      27 ..    1116    1141 ..    1115    1156 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.033
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl 26 
                   l G++g GKS l ++L+ al+ + 
    KIR66187.1 473 LIGATGSGKSELLRTLVCALAATH 496
                   78*************999998554 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.02
  RNA_helicase   3 lyGpsgeGKStlakeLakallkklklkkkdsvy 35 
                   + G+++ GKStl ++L+ +l+ +  ++++ ++y
    KIR66187.1 835 VAGAPQSGKSTLLRTLILSLAVTH-TPEEAQIY 866
                   679**************9999555.56666666 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.43
  RNA_helicase    2 wlyGpsgeGKStlakeLakallkklk 27  
                    +++G++ +GKS++ + + +a+ ++++
    KIR66187.1 1116 LVFGDAETGKSNALRLVLDAVRRRYG 1141
                    799***********999998887774 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0     0.003       2.2      22      60 ..     469     511 ..     460     540 .. 0.78
   2 !    6.1   0.0    0.0058       4.4     244     312 ..     584     653 ..     581     656 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.003
      AAA_10  22 sasliiGdlGnGKSvlakllvlyisllg....gkaliiDpkke 60 
                 ++ l+iG +G GKS l ++lv  +++        ++++D k  
  KIR66187.1 469 PHGLLIGATGSGKSELLRTLVCALAATHsseiLNLVLVDFKGG 511
                 7889*****************9998887666666777777766 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0058
      AAA_10 244 vifDEawif.tssaeGkkllkelvRiGRsynaavylvtqsadDvlkeelknniglklaFretdkeeikkv 312
                 v++DE   +  s +e   l  ++ R GRs    ++l++q  d    ++ ++ ++++la r     e + v
  KIR66187.1 584 VVVDEFSELlSSKSEFMDLFVSIGRLGRSLGVHLLLASQRLDEGRINRVEGHLSYRLALRTFSTMESRAV 653
                 577886554055578899999**************************************98777776655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0024       1.8      15      34 ..     472     491 ..     466     556 .. 0.87
   2 ?    5.7   0.1     0.027        20      13      33 ..     832     852 ..     828     891 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0024
                 EEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagl 34 
                  ++G +G+GKS Ll++l   
  KIR66187.1 472 LLIGATGSGKSELLRTLVCA 491
                 589************98754 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.027
                 EEEEEESTTSSHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllag 33 
                  v++ G   +GKStLl++l+ 
  KIR66187.1 832 HVGVAGAPQSGKSTLLRTLIL 852
                 688999999********9875 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00021      0.16      31      87 ..     446     506 ..     429     520 .. 0.78
   2 ?    0.6   0.0      0.35   2.6e+02      53      79 ..    1112    1138 ..    1105    1148 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
      DUF815  31 vgidkqkealventeqfleglpannvLLwGarGtGKSslvkallneyaeeg....Lrliev 87 
                 +g+ +  e +  + ++ ++g    + LL+Ga G+GKS l+++l+ ++a+++    L l+ v
  KIR66187.1 446 IGVTADGEVIELDLKESAQGGMGPHGLLIGATGSGKSELLRTLVCALAATHsseiLNLVLV 506
                 5666666666667778889999999************999998887776655556666655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.35
      DUF815   53 annvLLwGarGtGKSslvkallneyae 79  
                  + ++L++G+  tGKS  ++ +l ++++
  KIR66187.1 1112 TPHLLVFGDAETGKSNALRLVLDAVRR 1138
                  5689***************99988765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2       1.4     1e+03      53     124 ..     227     289 ..     223     308 .. 0.64
   2 ?    6.8   0.6     0.006       4.5      36      61 ..     471     496 ..     466     601 .. 0.70
   3 ?    8.9   0.0    0.0014         1      22      59 ..     819     857 ..     801     912 .. 0.85
   4 ?   -3.3   0.0       7.4   5.6e+03      35      49 ..    1114    1128 ..    1100    1150 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.4
      AAA_25  53 lalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLfakdrggt 124
                 la a++     ++  ap   +  +++aE+ ++e+      + + l+++a+ +++d+ag  + +Lfa+++++ 
  KIR66187.1 227 LARAMLAQLATFH--APDELRIAVLAAEEHRAEWD-----WIKWLPHNAHPTAHDAAG--PARLFAAGHDEL 289
                 6666665555544..56778888888888885543.....333344446777777655..677777776654 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.006
      AAA_25  36 allaGapgtGKttlaldlalavatGk 61 
                 +ll+Ga+g+GK+ l+  l++a+a  +
  KIR66187.1 471 GLLIGATGSGKSELLRTLVCALAATH 496
                 79*******************99544 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0014
      AAA_25  22 rrwlvkgllpagelallaGapgtGKttlaldlalava.t 59 
                 r+  v +l  a++ + +aGap +GK+tl+  l l++a t
  KIR66187.1 819 RELFVADLSGADGHVGVAGAPQSGKSTLLRTLILSLAvT 857
                 4444568889999999*************9999999854 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 7.4
      AAA_25   35 lallaGapgtGKttl 49  
                    l++G+  tGK+ +
  KIR66187.1 1114 HLLVFGDAETGKSNA 1128
                  457788888888854 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0     0.001      0.78      90     109 ..     471     490 ..     411     501 .. 0.89
   2 ?    2.9   0.0     0.051        38      90     118 ..     834     861 ..     827     866 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.001
  Adeno_IVa2  90 GviyGPtGsGksqllrnlis 109
                 G++ G tGsGks+llr+l+ 
  KIR66187.1 471 GLLIGATGSGKSELLRTLVC 490
                 8999*************986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.051
  Adeno_IVa2  90 GviyGPtGsGksqllrnlissklisPiPe 118
                 Gv  G   sGks llr+li s  +  +Pe
  KIR66187.1 834 GV-AGAPQSGKSTLLRTLILSLAVTHTPE 861
                 55.455579**********9999999998 PP

>> MID_pPIWI_RE  MID domain of pPIWI_RE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   0.00011     0.081      24     116 ..      92     183 ..      75     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
  MID_pPIWI_RE  24 llklpevtrrperllaaikekrrrvkereealaqllg..raerptlalveiegkskakkrsdsDPKfalRlglakaGrlsQfilppekakaedka 116
                     + ++++  +++ l+ +++ rr+++ ++++ +q +   +++++tl  v +  +   ++r+++D +  +R+gl +++ +  f+ pp++++ ed +
    KIR66187.1  92 D-RKRKMRGERRDFLRYVTQLRRQARKAANQHRQAVLwdNPQPDTLWSVAMSSR-LWERRPSHDDFGKVRIGLGRQNAMMRFL-PPTTKPIEDLE 183
                   3.6778888888999999999997777777777777788999999988888888.89**************************.88777766655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.032        24       2      21 ..     472     491 ..     472     570 .. 0.74
   2 ?    6.8   0.0     0.012       9.1       1      18 [.     833     850 ..     833     914 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.032
      AAA_18   2 lltGtpGvGKttlakeLskr 21 
                 ll G+ G+GK++l + L   
  KIR66187.1 472 LLIGATGSGKSELLRTLVCA 491
                 589************99433 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.012
      AAA_18   1 IlltGtpGvGKttlakeL 18 
                 ++++G+p +GK+tl + L
  KIR66187.1 833 VGVAGAPQSGKSTLLRTL 850
                 689***********9988 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.014        10       5      23 ..     475     492 ..     471     514 .. 0.79
   2 ?    5.9   0.0     0.012       9.2       3      30 ..     835     861 ..     833     871 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.014
  Viral_helicase1   5 GvpGcGKStlirkllrtsl 23 
                      G+ G+GKS l+r+l++  l
       KIR66187.1 475 GATGSGKSELLRTLVCA-L 492
                      99************988.3 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.012
  Viral_helicase1   3 vhGvpGcGKStlirkllrtsliltvnrp 30 
                      v+G+p +GKStl+r+l+ + l +t  ++
       KIR66187.1 835 VAGAPQSGKSTLLRTLILS-LAVTHTPE 861
                      788999**********988.55554444 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.93   6.9e+02      34      55 ..     473     494 ..     464     516 .. 0.84
   2 ?   10.9   0.0   0.00022      0.17      23      54 ..     824     855 ..     808     860 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.93
                 EEE-TTSSHHHHHHHHHHHHHC CS
        MeaB  34 ltGvPGaGkstlvealglelrr 55 
                 l G  G+Gks l+  l++ l++
  KIR66187.1 473 LIGATGSGKSELLRTLVCALAA 494
                 468899**********999975 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00022
                 GGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHH CS
        MeaB  23 lakaGraqvvGltGvPGaGkstlvealglelr 54 
                  + +G    vG+ G P +Gkstl+  l+l+l+
  KIR66187.1 824 ADLSGADGHVGVAGAPQSGKSTLLRTLILSLA 855
                 456888899******************99885 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1    0.0003      0.23      22      62 ..     469     513 ..     456     544 .. 0.76
   2 ?   -2.7   0.0       2.2   1.7e+03     276     334 ..     598     655 ..     580     662 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0003
      DUF853  22 rhGliaGatGtGktvtLqvl....aeslseaGvpvfladvkGdLs 62 
                  hGl+ GatG Gk   L++l    a + s+     +l+d kG  +
  KIR66187.1 469 PHGLLIGATGSGKSELLRTLvcalAATHSSEILNLVLVDFKGGAT 513
                 5**************999872211445566667788888888655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.2
      DUF853 276 allekveqvvrLirskGvGvyfvtqnPld.lPdtvLaqLGnrvqhalraftpkdqkavka 334
                  +++    + rL rs Gv + + +q   +   + v + L  r+  alr f++ + +av  
  KIR66187.1 598 EFMDLFVSIGRLGRSLGVHLLLASQRLDEgRINRVEGHLSYRL--ALRTFSTMESRAVIG 655
                 4677777788999999999999999754425689999999997..9******99999865 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.46   3.4e+02      14      28 ..      63      77 ..      61      78 .. 0.92
   2 ?    5.0   0.1     0.017        13      20      41 ..     472     493 ..     463     509 .. 0.82
   3 ?    2.3   0.0      0.12        89      21      40 ..     835     854 ..     832     861 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.46
  Zeta_toxin 14 erPklillgGqpGAG 28
                ++P+l+++gG+ +AG
  KIR66187.1 63 RTPILYVMGGAMAAG 77
                68************9 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.017
  Zeta_toxin  20 llgGqpGAGKselaellkdele 41 
                 ll G++G+GKsel++ l  +l+
  KIR66187.1 472 LLIGATGSGKSELLRTLVCALA 493
                 7889**********99877765 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.12
  Zeta_toxin  21 lgGqpGAGKselaellkdel 40 
                 ++G+p +GKs+l++ l  +l
  KIR66187.1 835 VAGAPQSGKSTLLRTLILSL 854
                 89***********9987766 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.2    0.0019       1.4      21      58 ..     468     504 ..     459     517 .. 0.86
   2 ?    0.3   0.0      0.52   3.9e+02      24      48 ..     832     856 ..     815     868 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0019
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakrlpsllpplseeealeva 58 
                   G H  ll+G+ GsGK+ l + l   l++ +++e+l+  
    KIR66187.1 468 GPHG-LLIGATGSGKSELLRTLVCALAATHSSEILNLV 504
                   4454.689**********************99999865 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.52
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllpp 48 
                   ++ ++G+p sGK+ l + l   l+ 
    KIR66187.1 832 HVGVAGAPQSGKSTLLRTLILSLAV 856
                   46789********999988655544 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1     0.002       1.5       3      24 ..     472     493 ..     471     520 .. 0.81
   2 ?    0.3   0.0      0.67     5e+02      10      21 ..     841     852 ..     840     876 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.002
      AAA_21   3 vliGpNgsGKSnLLdaldllar 24 
                 +liG+ gsGKS LL++l ++  
  KIR66187.1 472 LLIGATGSGKSELLRTLVCALA 493
                 69***************88765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.67
      AAA_21  10 sGKSnLLdaldl 21 
                 sGKS+LL++l l
  KIR66187.1 841 SGKSTLLRTLIL 852
                 9********944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.45
# Mc/sec: 8758.57
//
Query:       KIR66188.1  [L=468]
Description: secretion protein snm4 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-15   55.8   1.5    9.9e-15   55.0   0.2    2.2  2  YukD      WXG100 protein secretion system (Wss), protein YukD


Domain annotation for each model (and alignments):
>> YukD  WXG100 protein secretion system (Wss), protein YukD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.2   5.5e-19   9.9e-15       1      76 []       9      86 ..       9      86 .. 0.93
   2 ?   -2.5   0.1      0.47   8.5e+03      13      56 ..     323     364 ..     316     371 .. 0.63

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 5.5e-19
                EEEEEEE-TTTEEEEEEETTSBTTHHHHHHHHHS-.....--S---TT-EEEEGGGEEEETTSBCGGGT--TT-EEEE CS
        YukD  1 lvrVtvlagnrrvDlaLPadvpvaellpalvrllg..epddeagrpggwsLarvggapLsgdrtLaeagVrDGdlLvL 76
                l+r+tv +++r+vDla+P   pva+llp l+r+ +  +p   a++++gw+L+rvg+ap+++  t ++++   G+ LvL
  KIR66188.1  9 LCRITVTGPRRKVDLAVPSGTPVATLLPILLRHTAtaGPPTGAAGAAGWVLQRVGEAPFDLAGTPESLDWLEGEELVL 86
                6*********************************99977777789999*****************9999999999987 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.47
                 EEEEEETTSBTTHHHHHHHHHS-...--S---TT-EEEEGGG.EE CS
        YukD  13 vDlaLPadvpvaellpalvrllgepddeagrpggwsLarvgg.ap 56 
                 +D  L  ++ va+ll  ++ l+     ++++  gw+L +v   a+
  KIR66188.1 323 ADTYLTVTMVVAALLLPVLFLFV---MATPGWVGWTLVTVLAsAV 364
                 55666666667777766666665...6666777788877655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1235  (0.0688828); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.57
# Mc/sec: 2476.62
//
Query:       KIR66189.1  [L=100]
Description: hypothetical protein TK50_13430 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-21   75.8   0.0    2.9e-21   75.5   0.0    1.1  1  YbaB_DNA_bd  YbaB/EbfC DNA-binding family


Domain annotation for each model (and alignments):
>> YbaB_DNA_bd  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.0   1.6e-25   2.9e-21       3      86 ..      11      94 ..       9      97 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 1.6e-25
                 HHHHHHHHHHHHHHHHTTSEEEEEETTTTEEEEEETT--EEEEEE-GGGG.GS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  YbaB_DNA_bd  3 qaqkmqkkmeeaqeelaekevegssggglVkVtvngkgevksikIdpslldpedkemLedlivaAvndAlkkaeeeaeeemskl 86
                 +a++++++m+ aqeel+ ++v+g +ggglV+Vt++g ge++++++dp+++ + d+  Le+l vaAv+d  + +++ a+++m+++
   KIR66189.1 11 RAERLRQRMASAQEELDRTSVTGRAGGGLVTVTLSGLGELRQVHVDPAVFAEGDARRLEELFVAAVRDGAESVRRLASARMGPI 94
                 7999*********************************************9999****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 702.99
//
Query:       KIR66190.1  [L=695]
Description: helicase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-12   47.1   0.0    8.3e-11   42.4   0.0    2.3  1  AAA_19           AAA domain
      3e-09   36.8   0.0    0.00035   20.2   0.0    2.1  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
    5.8e-09   35.6   0.0    5.2e-08   32.6   0.0    2.5  2  UvrD_C_2         UvrD-like helicase C-terminal domain
    1.3e-08   34.5   0.0    0.00079   18.9   0.0    2.5  2  PhoH             PhoH-like protein
    1.4e-07   31.5   0.0    4.4e-06   26.6   0.0    2.4  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    9.9e-06   25.4   0.0     0.0058   16.4   0.0    2.7  2  AAA_30           AAA domain
    7.3e-05   22.7   0.0    0.00013   21.8   0.0    1.3  1  AAA_11           AAA domain
    0.00053   19.3   0.3      0.031   13.5   0.1    2.3  2  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0021   17.6   0.0     0.0073   15.9   0.0    1.9  1  AAA_25           AAA domain
  ------ inclusion threshold ------
      0.016   15.6   0.4      0.076   13.4   0.1    2.4  3  AAA_16           AAA ATPase domain
      0.016   15.0   0.0       0.09   12.5   0.0    2.0  2  DEAD             DEAD/DEAH box helicase
      0.064   12.3   0.0       0.11   11.5   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
      0.083   12.3   0.0       0.15   11.4   0.0    1.3  1  UvrD_C           UvrD-like helicase C-terminal domain
       0.11   11.9   0.0        0.2   10.9   0.0    1.4  1  ATPase           KaiC
       0.15   11.8   0.9       0.49   10.2   0.4    2.0  2  S4               S4 domain


Domain annotation for each model (and alignments):
>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0     7e-14   8.3e-11       1     141 [.     181     540 ..     181     543 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 7e-14
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelg..gvkpeeillvaftgrAakelrerlaalgaeatTiHrlal.................... 77 
                 q ea++a +++v l+t+GpGtGKT+v  h+ a+l+ +   +    ++l+v +    ++ + + l +lg++   + ++++                    
  KIR66190.1 181 QDEAIRAPAHGVTLITGGPGTGKTQVALHRAAYLLYTDrgRFTDGRVLVVGPSTVFTEYIGKVLPGLGEDSVHLRAIGElfdgvvatrrdpaavarskg 279
                 8899*999************************98765500555599******************99999866666666577888888888888888888 PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  KIR66190.1 280 dltmvrvladlawdtpphapdhlrgltaddlakarveirrrceargvtvngaraeaarvlaelldgreapeaflnawwppltpqdvlpaqdgqwsvddv 378
                 888899999999999999999999999999999****************************************************************** PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  KIR66190.1 379 plldelaeilgrppeptrakpewqlrelrsgarlaetfvlswslndgwqlfapglatpmassgqsidhngywaaqrwaaaivlreghqvvswvdgfdpy 477
                 ****************************************************************************************99999777665 PP

      AAA_19  78 ..ldfddlltealelleeaeeekklqeee.llivDEfqdvdelqyrLlkallgekkklllvGDpdQl 141
                    ++ + l e+l     ae+e+++ +++ ++i DE+qd+++++ r++ + +  ++++++vGD  Q+
  KIR66190.1 478 geEGYVPVLAEPLP---VAETEEPVGDAYlHVILDEAQDLSPMECRMIARRA-AHASMTIVGDLGQA 540
                 55444444433333...578999**9***********************999.55559*****9997 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0     3e-07   0.00035       3      42 ..     179     219 ..     177     235 .. 0.83
   2 !   14.5   0.0   1.6e-05     0.019     256     295 ..     502     540 ..     490     542 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3e-07
                    HHHHHHHHS.-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS CS
  UvrD-helicase   3 peqreaias.lggpilveAsAGsGKTfvlaerilrlikeee 42 
                    +eq eai+   +g +l+  ++G+GKT+v  +r ++l+ + +
     KIR66190.1 179 REQDEAIRApAHGVTLITGGPGTGKTQVALHRAAYLLYTDR 219
                    7999***99999************************98765 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.6e-05
                    HSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG- CS
  UvrD-helicase 256 rykeiliDEyQDTnkiQyrilkllasgheelfmvGDpkQs 295
                     y ++  DE+QD++++  r++ + a++   +++vGD  Q+
     KIR66190.1 502 AYLHVILDEAQDLSPMECRMIARRAAHA-SMTIVGDLGQA 540
                    6889******************999887.7******9996 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.3   1.5e+03      38      46 ..     158     166 ..     136     168 .. 0.83
   2 !   32.6   0.0   4.3e-11   5.2e-08       4      51 ..     631     677 ..     629     678 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.3
    UvrD_C_2  38 LYtavTRAr 46 
                 L t +TRAr
  KIR66190.1 158 LLTSLTRAR 166
                 7799****8 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 4.3e-11
    UvrD_C_2   4 altihkaQGsefpaVivfdpd.laaarmgelrrrlLYtavTRAreklil 51 
                 a+ + +++G+e++ V++++p    aa+      + LY+a+TRA ++l++
  KIR66190.1 631 AVPVSQVKGLEYDRVVLVEPAdIVAAEPRG--MNRLYVALTRAVAELVV 677
                 78899***************9766666554..9***********99997 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   4.4e-05     0.053       9      66 ..     178     241 ..     173     331 .. 0.76
   2 !   18.9   0.0   6.6e-07   0.00079     123     164 ..     506     546 ..     502     565 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.4e-05
                 HHHHHHHHH..H-SEEEEE--TTSSTTHHHHHHHHHHHHT..TS-S..EEEEEE-S--TT---- CS
        PhoH   9 Qkeylealk..kndivfaiGpaGtGKtylavalavealkk..kkvk..riiltrpaveageelG 66 
                 Q+e  ea++  ++ ++ ++G  GtGKt +a+  a+ +l    ++++  r++++ p+    e +G
  KIR66190.1 178 QREQDEAIRapAHGVTLITGGPGTGKTQVALHRAAYLLYTdrGRFTdgRVLVVGPSTVFTEYIG 241
                 55555666666899*******************9988865223333446666666666555555 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 6.6e-07
                 EEE-SGGG--HHHHHHHHTTB-TT-EEEEEE----------- CS
        PhoH 123 vilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlpkgk 164
                 vilDEAQ++++++ +m+  R  + s + ++Gd+ q  +p   
  KIR66190.1 506 VILDEAQDLSPMECRMIARRAAHAS-MTIVGDLGQATHPLAA 546
                 9****************99987666.7778******999763 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.11   1.3e+02       2      16 ..     194     208 ..     193     222 .. 0.83
   2 !   26.6   0.0   3.7e-09   4.4e-06      65     232 ..     505     677 ..     493     679 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
  Viral_helicase1   2 vvhGvpGcGKStlir 16 
                      ++ G pG GK+++  
       KIR66190.1 194 LITGGPGTGKTQVAL 208
                      899********9755 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 3.7e-09
  Viral_helicase1  65 ililDEylllhaGyilllaalskaklvilfGDplQipfhsrnasfllahlpssl....shrvgrrttyllpsdvaeilsakvgteveversgel 154
                       +ilDE++ l + +  ++a+++      ++GD  Q ++   ++  +++ l+ +l     +     t y+ p+  a++  +    ++  +rs   
       KIR66190.1 505 HVILDEAQDLSPMECRMIARRAAHASMTIVGDLGQATHPLAAD--SWPELVRRLgkreARTLDLPTGYRVPQVIADFAARALAPGIPPTRSFRP 596
                      589**************99999999**********99997777..9999999994444444455678999999999999884555555554444 PP

  Viral_helicase1 155 kvetepkgqe.kvlvyltftqalkealgvr...evttvhevqGltfdkVtlvllketdlelisesrenllvAlTRhrkslvi 232
                       ++ e+ +++    ++  +t    +         +  v++v Gl++d+V+lv   +    +  ++ + l+vAlTR+  +lv+
       KIR66190.1 597 GGSLEIRQVDdLAEAVARETGTVIAPDHLAaalGAVPVSQVKGLEYDRVVLVEPADI-VAAEPRGMNRLYVALTRAVAELVV 677
                      4556666663333333333333333222224576789***************99775.45555779**********999987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.8e-06    0.0058       3      57 ..     178     235 ..     176     256 .. 0.73
   2 !    6.1   0.0    0.0069       8.3      91     157 ..     505     572 ..     447     594 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.8e-06
      AAA_30   3 naeQaaavealltsgdrvavltGpAGtGKttal..kalreaweaag....grviglAptgk 57 
                 + eQ +a++a +   + v+++tG++GtGKt +   +a+  +++++g    grv+++ p+  
  KIR66190.1 178 QREQDEAIRAPA---HGVTLITGGPGTGKTQVAlhRAAYLLYTDRGrftdGRVLVVGPSTV 235
                 678888887654...4489***********8641134445556657788888888877765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0069
      AAA_30  91 llivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlvea...agigtaeLtevvRq 157
                  +i DEa  ++  + + ++++a++  a++ +vGD  Q +   a + + +lv+    ++++t  L + +R 
  KIR66190.1 505 HVILDEAQDLSPMECRMIARRAAH--ASMTIVGDLGQATHPLAADSWPELVRRlgkREARTLDLPTGYRV 572
                 699*******************77..89999***999765555544444444333345555555555555 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.1e-07   0.00013       4      64 ..     179     234 ..     176     249 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.1e-07
      AAA_11   4 dsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSN 64 
                 ++q eai+ +     +tli G PGtgKT++ ++  ++ll     ++ + ++ r+Lv +pS 
  KIR66190.1 179 REQDEAIRAPAHG--VTLITGGPGTGKTQVALHRAAYLLY---TDRGRFTDGRVLVVGPST 234
                 6777888776654..59*********************55...46799***********95 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   2.6e-05     0.031       3      25 ..     192     214 ..     190     233 .. 0.83
   2 ?    3.5   0.0     0.029        35     343     360 ..     661     678 ..     650     680 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.6e-05
     DUF2075   3 vvlVtGvaGtGKtvvllnllael 25 
                 v l+tG++GtGKt v+l+ +a l
  KIR66190.1 192 VTLITGGPGTGKTQVALHRAAYL 214
                 789**************998877 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.029
     DUF2075 343 kNayrVLLtRGrkGlyiy 360
                 +N+++V LtR++ +l++ 
  KIR66190.1 661 MNRLYVALTRAVAELVVL 678
                 8**************996 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.1e-06    0.0073      30      77 ..     187     230 ..     164     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.1e-06
      AAA_25  30 lpagelallaGapgtGKttlaldlalava.tGkpwlgpvapeqgkVlyv 77 
                  pa++++l++G pgtGKt +al+ a+ ++ t++   g++  + g+Vl+v
  KIR66190.1 187 APAHGVTLITGGPGTGKTQVALHRAAYLLyTDR---GRF--TDGRVLVV 230
                 599***********************9998666...534..77888887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   6.4e-05     0.076      18     106 ..     184     266 ..     166     356 .. 0.65
   2 ?   -2.7   0.0       5.7   6.8e+03     139     150 ..     506     517 ..     492     587 .. 0.55
   3 ?   -2.4   0.0       4.7   5.6e+03      89     127 ..     635     672 ..     597     679 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.4e-05
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekd.ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala 106
                 ++r++  +++l++G +G+GK+ ++ + + +l  + +g f+ g+        p  ++++++   ++l  l+++  s  l+a  e +++++a
  KIR66190.1 184 AIRAPAHGVTLITGGPGTGKTQVALHRAAYLLYTdRGRFTDGRVLVV---GPSTVFTEYI-G-KVLPGLGED--SVHLRAIGELFDGVVA 266
                 566666699***************44444444441577777776666...3333466666.4.566666666..3335555555555555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.7
      AAA_16 139 lvlDdlqwadea 150
                 ++lD++q++ ++
  KIR66190.1 506 VILDEAQDLSPM 517
                 444444433332 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.7
      AAA_16  89 aesaeleawrekleealaavpelagaeasrllellkrll 127
                 ++ + le++r  l e +  + ++++ + +rl+ +l+r++
  KIR66190.1 635 SQVKGLEYDRVVLVEPAD-IVAAEPRGMNRLYVALTRAV 672
                 222233333333333222.44444444477777777766 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.5e-05      0.09       4      78 ..     181     256 ..     176     290 .. 0.79
   2 ?   -0.7   0.0      0.89   1.1e+03     125     145 ..     506     526 ..     500     539 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.5e-05
                 HHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.TTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
        DEAD   4 QaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.kgktgpkalivePtreLaeqtlnnlkkfkky.idlrv 78 
                 Q+eai +    g  l+ +  G+GKT ++l  +   +y++  + t  ++l+v P++  +e + + l  +++  ++lr+
  KIR66190.1 181 QDEAIRAPA-HGVTLITGGPGTGKTQVALHRAAYLLYTDrGRFTDGRVLVVGPSTVFTEYIGKVLPGLGEDsVHLRA 256
                 667777666.4588999999****************9987689999*********9999888888777775344554 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.89
                 EEEETHHHHHHTTTHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
        DEAD 125 lVlDEadrlldqgfsdfinri 145
                 ++lDEa+ l+ ++ +   +r 
  KIR66190.1 506 VILDEAQDLSPMECRMIARRA 526
                 8********999777666664 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   9.6e-05      0.11     113     146 ..     176     207 ..     162     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.6e-05
       T2SSE 113 alkekiaevlrkavrerglilvsGgTgsGKttll 146
                 + + +++e++r++  ++g+ l++Gg g+GKt ++
  KIR66190.1 176 TIQREQDEAIRAP--AHGVTLITGGPGTGKTQVA 207
                 5668899******..****************764 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.15     294     345 ..     636     678 ..     631     681 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 294 qAKGlEFdvVflagleegtfPsyrskkekrleEEkRlfYVaiTRAkkrLfis 345
                 q KGlE+d V+l++      P  +   e      ++ +YVa+TRA  +L++ 
  KIR66190.1 636 QVKGLEYDRVVLVE------PADIVAAE---PRGMNRLYVALTRAVAELVVL 678
                 89************......75543333...3457899*********99985 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00017       0.2      17      38 ..     188     209 ..     176     215 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
      ATPase  17 pegrvvlitGepGtGKtifalq 38 
                 p   v+litG+pGtGKt +al+
  KIR66190.1 188 PAHGVTLITGGPGTGKTQVALH 209
                 77789************88865 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.4   0.00041      0.49      13      36 ..     311     334 ..     310     340 .. 0.87
   2 ?   -2.1   0.0       2.8   3.4e+03       8      25 ..     662     679 ..     661     681 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00041
                 SSSHHHHHHHHHTTTEEETTEEE- CS
          S4  13 assrreArqlIehGrVlVNGkvvk 36 
                 a+ r e+r+ +e+++V+VNG ++ 
  KIR66190.1 311 AKARVEIRRRCEARGVTVNGARAE 334
                 66699***************9987 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.8
                 HHTTSSSSHHHHHHHHHT CS
          S4   8 arlglassrreArqlIeh 25 
                  rl+ a +r  A+  + h
  KIR66190.1 662 NRLYVALTRAVAELVVLH 679
                 6999*****999877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.48
# Mc/sec: 4378.76
//
Query:       KIR66191.1  [L=449]
Description: esterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-27   95.6   7.8    1.8e-27   95.6   7.8    2.0  2  CBM_2          Cellulose binding domain
    1.4e-22   80.3   1.0    1.4e-22   80.3   1.0    1.6  2  Esterase_phd   Esterase PHB depolymerase
    2.7e-13   49.9   0.5    5.1e-13   49.0   0.5    1.4  1  Peptidase_S9   Prolyl oligopeptidase family
     0.0018   18.2   0.0      0.035   13.9   0.0    2.5  2  Abhydrolase_2  Phospholipase/Carboxylesterase
     0.0092   15.9   0.1      0.029   14.2   0.1    1.8  2  Abhydrolase_3  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.011   15.4   4.0      0.074   12.7   2.9    2.3  2  Abhydrolase_1  alpha/beta hydrolase fold
      0.013   15.2   0.6      0.027   14.1   0.6    1.4  1  Esterase       Putative esterase
       0.54   10.4   5.1          1    9.5   5.1    1.4  1  CBP_BcsO       Cellulose biosynthesis protein BcsO


Domain annotation for each model (and alignments):
>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.3   2.8e+03      41      51 ..     262     272 ..     242     323 .. 0.55
   2 !   95.6   7.8     8e-31   1.8e-27       1     101 []     347     446 ..     347     446 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.3
                 TEEEEEEESEE CS
       CBM_2  41 gqrvtqlWnat 51 
                 +++ +  Wn  
  KIR66191.1 262 SDTPQAGWNRR 272
                 22233334433 PP

  == domain 2  score: 95.6 bits;  conditional E-value: 8e-31
                 EEEEEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S--EETTE CS
       CBM_2   1 aeatyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsaptsftvnGa 99 
                 +++t+av+  W+tG ta++t++N+g sa+ngW++ + lpagq++t+ Wnat+s +  +vta+n+ +N+ i++ gs+++Gfq ++ g+ ++ptsf++nGa
  KIR66191.1 347 CRVTVAVN-AWNTGLTANLTITNTGASAVNGWSLVFGLPAGQTITSGWNATYSPTTGQVTARNLAYNAAIPANGSIDIGFQVTHGGNAAKPTSFALNGA 444
                 67888886.9***************************************************************************************** PP

                 E- CS
       CBM_2 100 aC 101
                 +C
  KIR66191.1 445 SC 446
                 *9 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   1.0   6.1e-26   1.4e-22       4     185 ..      49     239 ..      46     266 .. 0.78
   2 ?   -2.6   0.3       1.4   3.2e+03     128     187 ..     293     355 ..     288     378 .. 0.52

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 6.1e-26
  Esterase_phd   4 rlylppGarrgamplvvmlhGctqsveefaaGtrmnlladklGvvvlypeqslranaqkcwnwykdtdra..GrGeaavvvalvdalvdehrvdaar 98 
                    +y+p  ++      v+ +hGc  s   f +G+ +  lad++G++v+yp  +++a   +c++ + d  ++  G  ++  +v++v+   ++++ d+ r
    KIR66191.1  49 HVYVPDNRPA-HPATVIAMHGCGGSGPAFYSGSEFASLADRYGFIVIYPTATQQAGFGNCFDTWSDAAKRhdGGSDPVSLVSMVRYAQQQYGADPER 144
                   5799987776.34467889******************************************9777665551266688999***************** PP

  Esterase_phd  99 vyvaGlsaGaaladllalhypdvfaavalhsGlalGeaadvi...saldvmrrG.lrqapaaavdalveagaypgl....p.alvvqGdadtvvav 185
                   vy +G s+G+ +++ +   yp+vf a a   G+++ + a ++      +    G ++++p    da  +  aypg     p   v +G adt v  
    KIR66191.1 145 VYATGSSSGGMMTNHMLAVYPEVFKAGAAFMGVPYNCFAGAAdypPGSSQCTGGsMNRTPQQWGDAVRQQ-AYPGYsgprPrVQVWHGTADTLVPY 239
                   ***********************************99665541113444444441445666666665555.8888633334235889999998865 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.4
  Esterase_phd 128 hsGlalGeaadvisaldvmrr.Glrqapaaavdalveagaypglpalv..vqGdadtvvavkn 187
                   hs ++ G aa +i+ +    +  +  +p+ +v    ++   p lp       G +  +vav+ 
    KIR66191.1 293 HSLPSGGMAAAAIAFFGLTSTpSPTTTPSPTVTPTPTTTPSPTLPPTTppASGACRVTVAVNA 355
                   555555666655554443322134556666777666666677776544123444444555443 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.5   2.3e-16   5.1e-13       5     160 ..      80     240 ..      75     247 .. 0.77

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 2.3e-16
                   HHHHHHHCC.T-EEEEE--TTSSTTH...CHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE CS
  Peptidase_S9   5 selqlladr.GyvvvvanirGsggyG...eafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevp 97 
                   se+++ladr G++v+++  +  +g+G   +++ da kr+ g  +   ++ +++++ +++ +d+er+++tG S GG++t+ +l+  p++Fka++a  +
    KIR66191.1  80 SEFASLADRyGFIVIYPTATQQAGFGncfDTWSDAAKRHDGGSDPVSLVSMVRYAQQQYGADPERVYATGSSSGGMMTNHMLAVYPEVFKAGAAFMG 176
                   55666665559*****9999888888444589***************************************************************** PP

                   ---CCCHHCSTTS.THH.HCCCC--TTTCHHHH...HHHHHH-CGGG-----EEEEEEETT-SSS-TH CS
  Peptidase_S9  98 vvdvlrydsdtdl.lte.eymewgnpeeneegy...kelspyspldnvkaypplLlihGlaDdrvppa 160
                   v  +      +    +  + ++ g  ++ +++     ++++y  +      p++ + hG+aD+ vp++
    KIR66191.1 177 VPYNCFAGAAD-YpPGSsQCTG-GSMNRTPQQWgdaVRQQAYPGYSG--PRPRVQVWHGTADTLVPYS 240
                   99888887775.3333323332.333233332200024455555555..9999999999999999986 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.6e-05     0.035      10     128 ..      56     166 ..      48     179 .. 0.76
   2 ?    0.9   0.0      0.14   3.2e+02     162     185 ..     229     252 ..     224     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.6e-05
                    SS---EEEEEE--TT--SHHHHHHHH.TT--TTEEEEEE---EEE-GGGTT-EEE-SS-B--SSTTS-B-HHHHHHHHHHHHHHHHHHHHTT--GG CS
  Abhydrolase_2  10 kdkaqavviflHGlGdsghawaeaakteaalpnikfifphgpelpvtlnggmrmpaWfdlvglspekkedeagikksaekleelidaelkkgipss 105
                    + ++ a+vi +HG G sg a++   +  +  ++  fi+        t+++g      fd  ++s+ + ++ +g ++ ++ ++ +  a++++g + +
     KIR66191.1  56 RPAHPATVIAMHGCGGSGPAFYSGSEFASLADRYGFIVIY---PTATQQAGFG--NCFD--TWSDAA-KRHDGGSDPVSLVSMVRYAQQQYGADPE 143
                    556789*****************99988888999999843...3344444443..2343..455555.55668888899888888889999***** PP

                    GEEEEEETHHHHHHHHHHHT-SS CS
  Abhydrolase_2 106 riiigGFSqGaalalylaltlpk 128
                    r+   G S G++++ +    +p+
     KIR66191.1 144 RVYATGSSSGGMMTNHMLAVYPE 166
                    *************9998877776 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.14
                    EEETT-SSS-HHHHHHHHHHHHTT CS
  Abhydrolase_2 162 iHgeeDpvvplalgkaakevlkkl 185
                     Hg+ D +vp++l +++ e  +++
     KIR66191.1 229 WHGTADTLVPYSLLQESIEQWTNV 252
                    6***********999887776665 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.7   3.9e+03     138     181 ..      45      87 ..      12      91 .. 0.64
   2 !   14.2   0.1   1.3e-05     0.029      48      89 ..     103     161 ..      63     188 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.7
                    HHHHHHHSSGGGGGSTTTSGGGCS-SST---EEEEEETT-TTHH CS
  Abhydrolase_3 138 dlfwrlylpeadrddplaspllaedlsglpptlvvvaefDplrd 181
                    ++ + +y+p++  ++p+    ++    g  p++    ef  l d
     KIR66191.1  45 RMRMHVYVPDNRPAHPATVIAMH-GCGGSGPAFYSGSEFASLAD 87 
                    34467888888888887765444.66667777766666666655 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.3e-05
                    HHHHHHHHHHHHHHTH.................HHHTETTCEEEEEEETHHHHHHHHHH CS
  Abhydrolase_3  48 avedalaalrwlaeqa.................welgadpsrivlaGdSaGGnlaaava 89 
                     +  +++ ++ +a+++                 +++gadp+r++  G S GG ++ +++
     KIR66191.1 103 GFGNCFDTWSDAAKRHdggsdpvslvsmvryaqQQYGADPERVYATGSSSGGMMTNHML 161
                    555555555555555556666666666666653599*******************9987 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.9   3.3e-05     0.074       3     106 ..      63     176 ..      61     215 .. 0.79
   2 ?    1.7   0.0     0.077   1.7e+02     198     240 ..     213     252 ..     180     261 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.3e-05
                    EEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.........CHH..SHHHHHHHHHHHHHHCTTS..SEEEEEETHHHHH CS
  Abhydrolase_1   3 lvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin........ddy..gtasvaddldrildalgdd..kltlvGhSmGGmi 86 
                    ++  hG +gs+  ++  + +  La+ ++ +i++ +    +  ++ +  +        +d     +s+  +++++++++g d  +++  G S GGm+
     KIR66191.1  63 VIAMHGCGGSGPAFYSGSEFASLAD-RYGFIVIYPTATQQAGFGNC-FDtwsdaakrHDGgsDPVSLVSMVRYAQQQYGADpeRVYATGSSSGGMM 156
                    6778999999999999999999998.88888888888888888885.444554445522255446899******999997522799********** PP

                    HHHHHHHHGGGEEEEEEESE CS
  Abhydrolase_1  87 alayaaeyperVkalvllga 106
                      +++a ype  ka ++  +
     KIR66191.1 157 TNHMLAVYPEVFKAGAAFMG 176
                    **********9998766555 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.077
                    HHHHHHHHC..THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSE CS
  Abhydrolase_1 198 aklllrlre..lknvlaptlvisgtsDplvppkaledlaqllpkk 240
                     + +  + +  +      + v++gt D lvp++ l ++ +++ ++
     KIR66191.1 213 QQAYPGYSGprP-----RVQVWHGTADTLVPYSLLQESIEQWTNV 252
                    334444433222.....7899***********8888877777765 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.6   1.2e-05     0.027       7     197 ..      45     237 ..      42     252 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
                 EEEEEEEE.CC.GGTTTEEEEEEE--TTHHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSBB.TTEEETTCCCCCCHCHHHHTHHHHH CS
    Esterase   7 eikvqvyLPedyspgrkypvvylldGltgwdqnfrakelleslaregeiaeviivvvprggessfysdwdlgarfyenategpgaeayetfltqeLlpl 105
                 ++++ vy P++ +p+  + +v++++G  g    f   + + sla+++     +iv+ p   +++   ++      +++a+  +g ++ ++ +   ++ +
  KIR66191.1  45 RMRMHVYVPDN-RPA-HPATVIAMHGCGGSGPAFYSGSEFASLADRY----GFIVIYPTATQQAGFGNCFDT--WSDAAKRHDGGSDPVSLV--SMVRY 133
                 57777888887.444.4455666677777778888888887888886....455555555555444444322..233344444444444444..37789 PP

                 HHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CCHCHHHC..............TTCCHHHCC-CCCCHCHHCHTTSEEEEEEEE CS
    Esterase 106 ldanfrtapdgravaGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWgq..............eekeawqendpvllakelsaslkalriyldv 190
                  ++++  +p++  ++G+S GG++  ++ + +p+ F+  ++f ++  p n++ g+               +++ +q++d+v +      s ++ r+ +  
  KIR66191.1 134 AQQQYGADPERVYATGSSSGGMMTNHMLAVYPEVFKAGAAFMGV--PYNCFAGAadyppgssqctggsMNRTPQQWGDAVRQQAYPGYSGPRPRVQVWH 230
                 99********99******************************99..77777777777777777777778888899999999998888888888888888 PP

                 CTTBCCC CS
    Esterase 191 Gtseddl 197
                 Gt ++ +
  KIR66191.1 231 GTADTLV 237
                 8888765 PP

>> CBP_BcsO  Cellulose biosynthesis protein BcsO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.1   0.00045         1      64     163 ..     258     355 ..     247     365 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00045
    CBP_BcsO  64 vPvsatvlsapasprr.vlPssslnvnadqsraaqislfnallaslasaesvsiiaPvtiasrePvsapqpaaltietvppatvrphplasaaavseas 161
                 +P s     a  + rr    s++ +v+a   ++a +sl    +a+ a a +    +P + +++ P + p p++    t+pp+t+     + a  v+ a 
  KIR66191.1 258 TPTSSDTPQAGWNRRRyADGSGTVQVEAYSIQGAGHSLPSGGMAAAAIAFFGLTSTPSPTTTPSPTVTPTPTTTPSPTLPPTTPP---ASGACRVTVAV 353
                 4555555555445555145699999*************99999999999999999999999999******************986...67777776555 PP

    CBP_BcsO 162 aa 163
                 +a
  KIR66191.1 354 NA 355
                 54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3009.66
//
Query:       KIR66192.1  [L=323]
Description: PaaX family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-21   74.4   0.2    1.1e-20   73.7   0.2    1.3  1  PaaX_C           PaaX-like protein C-terminal domain
    5.2e-14   52.2   2.1    5.2e-14   52.2   2.1    1.8  2  PaaX             PaaX-like protein
     0.0042   16.7   0.6       0.01   15.5   0.6    1.7  1  GntR             Bacterial regulatory proteins, gntR family
  ------ inclusion threshold ------
      0.032   14.6   0.0      0.074   13.4   0.0    1.5  2  Penicillinase_R  Penicillinase repressor


Domain annotation for each model (and alignments):
>> PaaX_C  PaaX-like protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.2   2.5e-24   1.1e-20       8      98 ..     200     289 ..     195     290 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 2.5e-24
      PaaX_C   8 lWdldelaakYeeflaeyrpllkellekeelapeeaFlvrtlllheyrkllfrDPgLPeellpedWpGaaarelfrelyrelaeaaerfle 98 
                 +Wd+d ++++Y++fl+++ p l  ++++   + + a ++rt++++ yr+++  DP+LP ellp+ Wp ++arelf+++y+ la++aer+++
  KIR66192.1 200 AWDIDVISRHYQAFLRRWTP-LLPRVRSGRIDGAAAVRARTEVMDTYRRFPVLDPQLPLELLPQGWPRQRARELFAAVYDGLAAPAERHVR 289
                 8*******************.7777788999**********************************************************97 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   2.1   1.2e-17   5.2e-14       3      67 ..      30      94 ..      28      97 .. 0.96
   2 ?   -2.1   0.0         1   4.6e+03      37      48 ..     285     296 ..     283     298 .. 0.85

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 1.2e-17
        PaaX  3 rSlivtlygdyveprggaiwlgsLirllaelGiseslvRaalsRlakaGwlvrekegrrsfYrLs 67
                + + vtl+ dy   +++a++++  ++llae G+s    R+a+sRla++G l ++++grrs YrLs
  KIR66192.1 30 QGVAVTLLADYTLRARAALPSAAIVALLAEAGVSTAGARTAISRLARRGVLEGSRQGRRSAYRLS 94
                56889***********************************************************9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1
        PaaX  37 eslvRaalsRla 48 
                 e+ vRa + R a
  KIR66192.1 285 ERHVRAVVARFA 296
                 899*****9976 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.6   2.3e-06      0.01      17      57 ..      41      83 ..      35      91 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.3e-06
                SS-TTSB---HH..HHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        GntR 17 elrpGdkLPser..eLaaefgVsrttvReALrrLeaeglverr 57
                +lr+ ++LPs    +L ae gVs+   R A++rL+++g++e  
  KIR66192.1 41 TLRARAALPSAAivALLAEAGVSTAGARTAISRLARRGVLEGS 83
                66777777764322899***********************843 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.7e-05     0.074      13      63 ..      43      92 ..      40     102 .. 0.88
   2 ?   -3.8   0.0       3.6   1.6e+04      85      97 ..     285     297 ..     275     302 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.7e-05
                     HHHS-EEHHHHHHT--GGG---HHHHHHHHHHHHHTTS-EEEEETTEEEEE CS
  Penicillinase_R 13 wekgeatvkevveeleeekelaysTVktllrrLvkKgllsrekegrafiYs 63
                     +++  + ++ +v+ l+e   ++ +  +t ++rL ++g+l+  ++gr+ +Y+
       KIR66192.1 43 RARAALPSAAIVALLAEA-GVSTAGARTAISRLARRGVLEGSRQGRRSAYR 92
                     566677888899999998.99999**************************7 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.6
                      XXXXXXXXXXXXX CS
  Penicillinase_R  85 egsvkelvaafve 97 
                      e++v+++va+f++
       KIR66192.1 285 ERHVRAVVARFAD 297
                      4455666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2448.40
//
Query:       KIR66193.1  [L=149]
Description: hypothetical protein TK50_13450 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00078   19.9   0.0     0.0013   19.2   0.0    1.4  1  DUF1801   Domain of unknown function (DU1801)


Domain annotation for each model (and alignments):
>> DUF1801  Domain of unknown function (DU1801)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   7.1e-08    0.0013       2      42 ..      57      97 ..      56     123 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 7.1e-08
                HHHHHHHHHHHHHHSTTSEEEEETTEEEEEE-SSEEEE... CS
     DUF1801  2 reelerLrklilealpeveesikwgmpfYtyakkhvslffk 42
                r+ +er++  + +a+p+++ + ++gmp+Y  a  ++ +ff+
  KIR66193.1 57 RALAERVHVAVTAAAPQLSPKTWYGMPAYANADGKIVVFFQ 97
                78899**************************9999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1082.09
//
Query:       KIR66194.1  [L=457]
Description: 1,4-beta-xylanase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.6e-104  348.8   0.0   3.1e-104  348.5   0.0    1.1  1  Glyco_hydro_10  Glycosyl hydrolase family 10
    9.4e-18   64.4  10.7    3.5e-17   62.6  10.7    2.0  1  CBM_2           Cellulose binding domain
     0.0003   20.3   0.1     0.0028   17.1   0.1    2.0  1  Cellulase       Cellulase (glycosyl hydrolase family 5)
     0.0083   15.5   0.0      0.069   12.5   0.0    2.0  2  Glyco_hydro_42  Beta-galactosidase


Domain annotation for each model (and alignments):
>> Glyco_hydro_10  Glycosyl hydrolase family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.5   0.0    7e-108  3.1e-104       2     315 ..      37     329 ..      36     330 .. 0.95

  Alignments for each domain:
  == domain 1  score: 348.5 bits;  conditional E-value: 7e-108
                     HHHHHHHTT.EEEEEESCHGHHCTTHHHHHHHHH-SEEEESSTTSHHHHCSBTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESSS--HHHHTSCC CS
  Glyco_hydro_10   2 lkelakakf.kvgtavsaselegeskekellkkefnsltaeNemKwealepsegnftfekadklvdfakennmkvrGHtLvWhsqlPdwvkkeng 95 
                     l+++a++k+ ++g+av+ ++l+++ +++++l++efns++aeNemKw+a+ep++g f+++ +d+lv++a++n+m+vrGH+L+Wh+q P w +    
      KIR66194.1  37 LRAAAAEKGrYFGAAVATGKLSNS-TYTTILNREFNSVVAENEMKWDATEPQQGVFNYSGGDRLVSHARANGMSVRGHALLWHQQEPGWAQGM-- 128
                     7889999999***********998.******************************************************************96.. PP

                     CHHHHHHHHHHHHHHHHHHHHTTTTESEEEEEES-B-TTSCSBE-SHHHHHHTTHHHHHHHHHHHHH-TTSEEEEEESSTTSTSHHHHHHHHHHH CS
  Glyco_hydro_10  96 skaeeallkrlenhiktvverykgkiyawDVVNEavddnggslresvwyqilGedyiekAFeaAreadpdakLyyNDYnieeanakrkavvelvk 190
                     s ++  l++++ nh+++v++++kg+iyawDVVNEa++d g + r+    q +G+d+ie AF+aAr+adp akL+yNDYn++  nak+++++++v+
      KIR66194.1 129 SGSA--LRSAMINHVTQVATHFKGQIYAWDVVNEAFADGGSGGRRDSNLQRTGNDWIEAAFRAARAADPGAKLCYNDYNTDGVNAKSTGIYNMVR 221
                     4445..99********************************555665668899******************************************* PP

                     HHHHTT----EEEE--EEETTSCHHHHHHHHHHHHHTTTSEEEEEEEEEECETTSSHHHHHHHHHHHHHHHHHHHHHCTTTEEEEEESSSBGGGS CS
  Glyco_hydro_10 191 elkekgvpidgvGiQsHlsvdspsiseieaalkklaalglevaitELDirvkkssseeealeaqakrykelvkallevkekitgvtvWgvtDkys 285
                     ++k++gvpid+vG+QsHl +  +  s+++a+l+++a+lg++v+itELD+ +           +qa+ + ++++a+++v+ ++tg+tvWgv+D +s
      KIR66194.1 222 DFKSRGVPIDCVGFQSHLGTTLA--SDYQANLQRFADLGVDVQITELDVMTGG---------NQANIFGAVTRACMNVS-RCTGITVWGVRDCDS 304
                     ******************88887..************************9965.........689**************.*************** PP

                     TTHHHSTTEC--SSB-TTS-B-HHHHHHHH CS
  Glyco_hydro_10 286 Wlsglkkkeeapllfdsnyqpkpayeavvd 315
                     W+ +     +++llfd n ++kpay++v++
      KIR66194.1 305 WRGS-----DNALLFDCNGNKKPAYDSVLN 329
                     ***9.....******************987 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6  10.7   7.8e-21   3.5e-17       4      92 ..     367     453 ..     364     457 .] 0.89

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 7.8e-21
                 EEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S CS
       CBM_2   4 tyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsapt 92 
                 t++  ++W +Gf a+v+v+  gs  + gW+v+ tlp g++vt +W+at+s+s  +v + nv++Ng++a+G+ ++fGfqg++t+ + +pt
  KIR66194.1 367 TVS-ANSWTGGFVATVKVTA-GSGGTRGWNVSVTLPGGTSVTGTWSATASGSSGTVRFANVDYNGQLAAGQVTEFGFQGNGTAPTQTPT 453
                 444.469***********97.555668*******************************************************9887776 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   6.3e-07    0.0028      65     165 ..      97     196 ..      58     296 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.3e-07
                 HHHHHHHHHTT-EE...EEEEESS.TTTCSSSSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCTCCT..CHHHTTHHHHHHHHHHH CS
   Cellulase  65 eevvkyakenglyv...ildiHse.egwltkadgnssedtaeeffkklwtqiAerykkndevvifelmNEPhgnntgaew..tseeadevkayaeeaik 157
                 + +v  a +ng+ v    l +H++ +gw   a+g s ++ + + +++ +tq+A+++  + ++ +++++NE +  +  + +  +s+ + + +++ e+a+ 
  KIR66194.1  97 DRLVSHARANGMSVrghALLWHQQePGW---AQGMSGSALRSAMINH-VTQVATHF--KGQIYAWDVVNEAFADGG-SGGrrDSNLQRTGNDWIEAAFR 188
                 67899999999999888899***999**...5556666777777777.999*****..77899*********9554.4457889999999********* PP

                 HHHHHTTS CS
   Cellulase 158 aIRavgpn 165
                 a Ra++p 
  KIR66194.1 189 AARAADPG 196
                 *****997 PP

>> Glyco_hydro_42  Beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   1.5e-05     0.069      26      63 ..      73     110 ..      60     111 .. 0.89
   2 ?    0.4   0.0     0.072   3.2e+02     106     138 ..     131     161 ..     124     190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.5e-05
                     EEEE-TT-HHHH-SBTTB---HHHHHHHHHHHCTT-EE CS
  Glyco_hydro_42  26 vvrlgefaWaklePeegkydFewLdevldllekagikv 63 
                     vv+ +e+ W  +eP++g +++++ d++++ + ++g++v
      KIR66194.1  73 VVAENEMKWDATEPQQGVFNYSGGDRLVSHARANGMSV 110
                     56668999***************************988 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.072
                     HHHHHHHHHHHHHHHHHHTT-TTEEEEE-SSST CS
  Glyco_hydro_42 106 pvyrekvakivealaerYkdhpavilwhidnEy 138
                     ++ r+++ + v+++a+++k   ++ +w + nE 
      KIR66194.1 131 SALRSAMINHVTQVATHFKG--QIYAWDVVNEA 161
                     5679999999********86..699******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 2917.41
//
Query:       KIR66195.1  [L=437]
Description: esterase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-19   71.0   0.1    1.7e-19   70.2   0.1    1.4  1  Esterase_phd   Esterase PHB depolymerase
    3.2e-17   62.7  10.7    3.2e-17   62.7  10.7    2.2  2  CBM_2          Cellulose binding domain
    1.3e-07   31.4   0.1    2.2e-07   30.6   0.1    1.4  1  Peptidase_S9   Prolyl oligopeptidase family
     0.0052   16.5   0.0     0.0079   15.9   0.0    1.3  1  FSH1           Serine hydrolase (FSH1)
     0.0053   16.7   0.0     0.0053   16.7   0.0    1.9  3  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
  ------ inclusion threshold ------
      0.012   15.3   0.0        6.4    6.6   0.0    2.8  2  DUF3060        Protein of unknown function (DUF3060)
      0.018   14.9   0.3       0.04   13.7   0.1    1.6  2  Abhydrolase_2  Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.1   6.8e-23   1.7e-19       3     195 ..      49     245 ..      47     265 .. 0.78

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 6.8e-23
  Esterase_phd   3 yrlylpp.GarrgamplvvmlhGctqsveefaaGtrmnlladklGvvvlypeqslranaqkcwnwyk.dt.draGrGeaavvvalvdalvdehrvda 96 
                     ly+p   a r    l++ lh ct s     +G ++  lad++G++v+yp  ++   + kcw+    +   r G  ++  + +++d +   + vda
    KIR66195.1  49 MHLYVPDrVAAR--PALLLALHYCTGSGPAVHTGFQLSSLADRYGYIVIYPSVTR---SSKCWDVSSpQAlRRDGGSDPVGLKSMIDYVRGRYPVDA 140
                   679999844445..357889*******************************9875...679***99876515567778999**************** PP

  Esterase_phd  97 arvyvaGlsaGaaladllalhypdvfaavalhsGlalGeaadv.isaldvmrrGlrqapa.aavdalveagaypgl....pal.vvqGdadtvvavk 186
                    r+ v G+s+Ga +++++a  ypdvf a    sG+++G+ a +  s  +   +G r   +    + lv   aypg     p + + +G +dt+++  
    KIR66195.1 141 NRIGVIGFSSGAMMTNVMAGLYPDVFHAGVSSSGVPFGCFATTnGSEWNSECSGGRIVKTpQQWGDLVRN-AYPGYtgkrPRMqIWHGTTDTTLSYV 236
                   ****************************999********6654156677777776643330334555555.68875333344338889888888877 PP

  Esterase_phd 187 naeslvval 195
                   n  + + + 
    KIR66195.1 237 NFGEQIKQW 245
                   766555555 PP

>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       2.4   6.1e+03      60      73 ..     182     195 ..     165     205 .. 0.59
   2 !   62.7  10.7   1.3e-20   3.2e-17       4      92 ..     347     433 ..     344     437 .] 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.4
                 EEEE-STT-EE-TT CS
       CBM_2  60 tatnvswNgtiapG 73 
                 t ++ +wN+    G
  KIR66195.1 182 TTNGSEWNSECSGG 195
                 34445566555444 PP

  == domain 2  score: 62.7 bits;  conditional E-value: 1.3e-20
                 EEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S CS
       CBM_2   4 tyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsapt 92 
                 t++  ++W +Gf a+v+v+  gs  + gW+v+ tlp g++vt +W+at+s+s  +v + nv++Ng++a+G+ ++fGfqg++t+ + +pt
  KIR66195.1 347 TVS-ANSWTGGFVATVKVTA-GSGGTRGWNVSVTLPGGTSVTGTWSATASGSSGTVRFANVDYNGQLAAGQVTEFGFQGNGTAPTQTPT 433
                 444.469***********97.555668*******************************************************9887776 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.1   8.5e-11   2.2e-07      47     159 ..     124     235 ..      78     250 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 8.5e-11
                   HHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTSTHHHCCCC--TTTCHHHHHH..HHHH-CGGG-- CS
  Peptidase_S9  47 DfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdllteeymewgnpeeneegyke..lspyspldnvk 141
                    +  +++++  ++ vd++r+++ G S G ++t+++++  pd+F+a+v++ +v       ++ + ++ e  +     + +++  +  +++y  ++   
    KIR66195.1 124 GLKSMIDYVRGRYPVDANRIGVIGFSSGAMMTNVMAGLYPDVFHAGVSSSGVPFGCFATTNGSEWNSECSGGRIV-KTPQQWGDlvRNAYPGYTG-- 217
                   466788999999*************************************99977777777666677766664443.3333333211444555555.. PP

                   ---EEEEEEETT-SSS-T CS
  Peptidase_S9 142 aypplLlihGlaDdrvpp 159
                   + p++ + hG++D+   +
    KIR66195.1 218 KRPRMQIWHGTTDTTLSY 235
                   778888888888876655 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.1e-06    0.0079      80     124 ..     119     163 ..      88     235 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.1e-06
        FSH1  80 kneyegleesldavkdyikengpfdGiiGFSqGaalaallaslle 124
                  ++  gl+  +d+v+          G+iGFS Ga++++++a l  
  KIR66195.1 119 GSDPVGLKSMIDYVRGRYPVDANRIGVIGFSSGAMMTNVMAGLYP 163
                 4455566666666666666666677**************998765 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3       1.7   4.3e+03      35      65 ..       8      38 ..       6      50 .. 0.70
   2 !   16.7   0.0   2.1e-06    0.0053      10      51 ..     129     171 ..     126     188 .. 0.85
   3 ?   -3.4   0.0         3   7.6e+03     150     166 ..     278     294 ..     273     297 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.7
                HHHHHHHHSSSEEEEEEES--SB--SSEEEE CS
      BAAT_C 35 lalllasflkkisavvlingsavvvegklvy 65
                la +la+ l   +av+  + +a     ++v 
  KIR66195.1  8 LAAALATALATTTAVITAATPASAATLTQVT 38
                6778888888888888877766655555555 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.1e-06
                 HHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSSSE.EEEEE CS
      BAAT_C  10 inyllrhpkvkkdkigllGiSkGgelalllasflkki.savvl 51 
                 i+y++ +  v  ++ig++G S G+ +++++a  ++++ +a v+
  KIR66195.1 129 IDYVRGRYPVDANRIGVIGFSSGAMMTNVMAGLYPDVfHAGVS 171
                 899999999*************************976245555 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3
                 --EEEEETTB-S---ST CS
      BAAT_C 150 evqlltYpkaGHliepP 166
                  v+ +++++ GH i ++
  KIR66195.1 278 PVEAISFQGYGHSIPFD 294
                 688999******99776 PP

>> DUF3060  Protein of unknown function (DUF3060)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0025       6.4      15      40 ..     280     305 ..     276     307 .. 0.91
   2 ?    5.5   0.2    0.0055        14       9      32 ..     384     406 ..     371     407 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0025
     DUF3060  15 eavtVsGssNtVtvdsvdkitvsGld 40 
                 ea++ +G ++++ +d++++i+  G+d
  KIR66195.1 280 EAISFQGYGHSIPFDAAQAIRFLGFD 305
                 78999*******************99 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0055
     DUF3060   9 tltGeCeavtVsGssNtVtvdsvd 32 
                 ++tG+ ++ t sGss tV++ +vd
  KIR66195.1 384 SVTGT-WSATASGSSGTVRFANVD 406
                 58999.**************9997 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.6e-05      0.04      99     125 ..     135     161 ..     124     195 .. 0.77
   2 ?   -3.4   0.0       2.8   7.1e+03      53      74 ..     232     253 ..     225     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.6e-05
                    HTT--GGGEEEEEETHHHHHHHHHHHT CS
  Abhydrolase_2  99 kkgipssriiigGFSqGaalalylalt 125
                     ++++++ri ++GFS Ga+++   a  
     KIR66195.1 135 RYPVDANRIGVIGFSSGAMMTNVMAGL 161
                    5679****************9665555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.8
                    EE-GGGTT-EEE-SS-B--SST CS
  Abhydrolase_2  53 lpvtlnggmrmpaWfdlvglsp 74 
                     ++++n g +  +W ++ g+s+
     KIR66195.1 232 TLSYVNFGEQIKQWTNVLGVSQ 253
                    4567788888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3092.52
//
Query:       KIR66196.1  [L=429]
Description: cellulose-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-17   62.7  10.7    3.2e-17   62.7  10.7    2.0  2  CBM_2          Cellulose binding domain
      0.006   16.3   0.1      0.041   13.5   0.1    2.0  1  Esterase       Putative esterase
  ------ inclusion threshold ------
        0.2   11.5   0.0       0.32   10.8   0.0    1.3  1  Abhydrolase_2  Phospholipase/Carboxylesterase
       0.83    9.7   3.8        1.6    8.8   3.8    1.4  1  PRIMA1         Proline-rich membrane anchor 1


Domain annotation for each model (and alignments):
>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2       3.4   1.5e+04      11      33 ..      92     111 ..      89     122 .. 0.57
   2 !   62.7  10.7     7e-21   3.2e-17       4      92 ..     339     425 ..     336     429 .] 0.89

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.4
                 -SSEEEEEEEEEE-SSS-EES-E CS
       CBM_2  11 WetGftasvtvkNsgssaingWt 33 
                 W +G     ++ N g+s    W+
  KIR66196.1  92 WRGGTA--TEIDNGGTSGA-AWS 111
                 555543..34666666653.465 PP

  == domain 2  score: 62.7 bits;  conditional E-value: 7e-21
                 EEEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEEESEEEEEETTEEEEEE-STT-EE-TTEEEEEEEEEEE-SS----S CS
       CBM_2   4 tyavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtqlWnatvsqsGnsvtatnvswNgtiapGgsasfGfqgsktgsnsapt 92 
                 t++  ++W +Gf a+v+v+  gs  + gW+v+ tlp g++vt +W+at+s+s  +v + nv++Ng++a+G+ ++fGfqg++t+ + +pt
  KIR66196.1 339 TVS-ANSWTGGFVATVKVTA-GSGGTRGWNVSVTLPGGTSVTGTWSATASGSSGTVRFANVDYNGQLAAGQVTEFGFQGNGTAPTQTPT 425
                 444.469***********97.555668*******************************************************9887776 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   9.2e-06     0.041       4     149 ..      64     196 ..      61     209 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.2e-06
                 TTEEEEEEEEE.CC.GGTTTEEEEEEE--T.......THHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSBB.TTEEETTCCCCCCHC CS
    Esterase   4 lgreikvqvyLPedyspgrkypvvylldGl.......tgwdqnfrakelleslaregeiaeviivvvprggessfysdwdlgarfyenategpgaeaye 95 
                  g+++ + ++ P++y+++++y ++++++         ++  +++ a++++++l ++    + +i v p+g  +     w          ++g++    +
  KIR66196.1  64 NGKSRSFILRMPNNYNNNNQYRLIFAFHWRggtateiDNGGTSGAAWSYYGQLEQS---NNTAILVAPQGLGN----GWG---------NAGGED---V 143
                 57889999999999999999999999994444463333333455666666666555...69999999999888....333.........223333...4 PP

                 HHHHTHHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCEEEEES-- CS
    Esterase  96 tfltqeLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFgsvssfSpi 149
                 tf+   +l  +++ + +++++r ++G+S GG ++  la  + + F  v++ S+ 
  KIR66196.1 144 TFVD-DMLRRIEGDLCVDTTQRFALGFSWGGGMSYALACARATVFRAVAVISGA 196
                 6664.57889******************************************85 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.2e-05      0.32     105     184 ..     162     235 ..     145     246 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.2e-05
                    GGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHHHHHT CS
  Abhydrolase_2 105 sriiigGFSqGaalalylaltlpkklggivafsgalplsqklessatavtkklpilqiHgeeDpvvplalgkaakevlkk 184
                     + +  GFS G+ ++ +la +  +  + +  +sga ++  +        t+ ++++ +Hg  D v++++ g a+   +  
     KIR66196.1 162 TQRFALGFSWGGGMSYALACARATVFRAVAVISGAQISGCSGG------TQPIAYFGLHGISDSVLNISQGRALRDTFVR 235
                    555678*************999999999999999988765544......45688***************99998776655 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.8   0.00036       1.6      24      69 ..     311     357 ..     296     360 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00036
      PRIMA1  24 rrypplpppppppppprllslt.aaestvsplepwwselviiiavvc 69 
                  ++ p p+p+ ppp+p    +  a  s+++ +++w  ++v  + v+ 
  KIR66196.1 311 NPTTPPPSPTTPPPSPTTPPPGgAGCSATVSANSWTGGFVATVKVTA 357
                 34445566666777776654441445666777899999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3018.61
//
Query:       KIR66197.1  [L=231]
Description: GntR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-27   94.0  10.6    1.6e-26   93.1  10.6    1.4  1  FCD       FCD domain
    7.8e-18   63.9   0.1    1.7e-17   62.8   0.1    1.6  1  GntR      Bacterial regulatory proteins, gntR family
     0.0014   18.6   0.1     0.0067   16.5   0.0    2.3  2  HTH_20    Helix-turn-helix domain
     0.0037   17.7   0.5     0.0089   16.5   0.5    1.6  1  HSCB_C    HSCB C-terminal oligomerisation domain
     0.0056   16.6   1.3      0.021   14.7   0.1    2.6  3  MarR_2    MarR family
  ------ inclusion threshold ------
       0.01   15.5   0.0      0.027   14.2   0.0    1.7  1  HTH_41    Helix-turn-helix domain
      0.016   14.8   0.8      0.095   12.3   0.1    2.3  2  HTH_24    Winged helix-turn-helix DNA-binding
      0.024   14.5   0.0      0.026   14.4   0.0    1.3  1  FadR_C    FadR C-terminal domain
      0.026   14.9   0.2       0.95    9.9   0.0    2.4  2  Rrf2      Transcriptional regulator
      0.032   13.8   0.0      0.065   12.8   0.0    1.5  1  HTH_CodY  CodY helix-turn-helix domain
       0.12   12.4   0.4       0.46   10.5   0.0    2.1  2  HTH_11    HTH domain
       0.13   12.4   0.2         28    5.0   0.0    3.4  3  HTH_17    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1  10.6   1.1e-29   1.6e-26       1     124 [.      92     214 ..      92     215 .. 0.94

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 1.1e-29
         FCD   1 dlyelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrrlrrlals.sperleesla 98 
                 +++e+R++LEp a+ laa r+tdadl+el ++le++++aa+  d e++++ d aFH ++++a+gn++l++ll+ l+ r+ r+r ++    ++ ++++++
  KIR66197.1  92 EVMEVRRMLEPVATGLAALRMTDADLDELSRILEEMRAAAD--DAEKLIRFDTAFHHTVVAATGNETLTSLLDGLSSRTVRARVWRGLiEGNSAHQTID 188
                 689************************************88..8889*********************************966665556********** PP

         FCD  99 eHraildAirardadaAraamrrHle 124
                 eH+ai+ A+rard   A+a +  H++
  KIR66197.1 189 EHHAIYLALRARDQLLAQASALMHVN 214
                 *******************9999986 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.1   1.2e-20   1.7e-17       2      64 .]       4      66 ..       3      66 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 1.2e-20
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                ++++ +++r +I sgel pG++LP+e +Laa++g sr+ vReA + Le++ ++ +r+g Gt+V
  KIR66197.1  4 TDDAIAKIRSMIQSGELPPGARLPPEPQLAAQMGLSRSGVREAVKVLESARVLDVRRGDGTYV 66
                577899********************************************************9 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.5e-06    0.0067      26      58 ..      28      60 ..       2      62 .. 0.87
   2 ?   -3.0   0.0       5.3   7.9e+03      36      44 ..     164     172 ..     156     182 .. 0.53

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.5e-06
                -HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEEC CS
      HTH_20 26 taselaerldlskntlsyHLrvLeeagLvevvr 58
                  ++la++++ls++ ++  ++vLe+a  ++v+r
  KIR66197.1 28 PEPQLAAQMGLSRSGVREAVKVLESARVLDVRR 60
                578****************************98 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.3
                 S-HHHHHHH CS
      HTH_20  36 lskntlsyH 44 
                 ls  t++ +
  KIR66197.1 164 LSSRTVRAR 172
                 444444433 PP

>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.5   5.9e-06    0.0089       4      46 ..      88     138 ..      86     164 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.9e-06
                 HHHHHHHHHHHHHHCG........GGSSSHHHHHHHHHHHHHHHHHHHHHH CS
      HSCB_C   4 efLmevMelrEeleea........eeaadkeeleelkaeveerieeleael 46 
                 + L evMe+r  le +        + +ad +el+++ +e+++  ++ e+ +
  KIR66197.1  88 DTLLEVMEVRRMLEPVatglaalrMTDADLDELSRILEEMRAAADDAEKLI 138
                 679*************99999999777799*************99999876 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   1.4e-05     0.021      26      59 ..      31      62 ..      22      63 .. 0.92
   2 ?   -1.5   0.0       1.6   2.4e+03      38      48 ..     120     130 ..     103     131 .. 0.76
   3 ?   -2.8   0.0         4     6e+03       5      17 ..     204     216 ..     202     223 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
                HHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSS CS
      MarR_2 26 elarrlglsksavsrilkrLvaaGLverrpgpeD 59
                +la+ +gls+s v  ++k L++a  +  r+g  D
  KIR66197.1 31 QLAAQMGLSRSGVREAVKVLESARVLDVRRG--D 62
                89**********************9999988..5 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.6
                 HHHHHHHHHHT CS
      MarR_2  38 vsrilkrLvaa 48 
                 +sril+++ aa
  KIR66197.1 120 LSRILEEMRAA 130
                 68888888776 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 4
                 HHHHHHHHHHHCT CS
      MarR_2   5 paqarvLaaLgrr 17 
                 +aqa +L+++  +
  KIR66197.1 204 LAQASALMHVNTS 216
                 5788888877665 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.8e-05     0.027       3      42 ..      23      61 ..      22      66 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
      HTH_41  3 GdRlktIeelakeleLSvGlvQkALklLeddkaislerrG 42
                G+Rl+  ++la +++LS+  v  A+k Le++++  + r G
  KIR66197.1 23 GARLPPEPQLAAQMGLSRSGVREAVKVLESARVLDVRR-G 61
                99******************************999854.4 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   6.3e-05     0.095      22      44 ..      31      53 ..      30      56 .. 0.92
   2 ?   -0.2   0.1      0.51   7.6e+02      28      38 ..     163     173 ..     163     173 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.3e-05
      HTH_24 22 eLAerlglSpstvnrrlkrLeee 44
                +LA + glS+s v++ +k Le++
  KIR66197.1 31 QLAAQMGLSRSGVREAVKVLESA 53
                79******************986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.51
      HTH_24  28 glSpstvnrrl 38 
                 glS+ tv++r+
  KIR66197.1 163 GLSSRTVRARV 173
                 8********97 PP

>> FadR_C  FadR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.7e-05     0.026      51      99 ..     118     166 ..      31     221 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
      FadR_C  51 ekslevlaevkeledkaeafaefDYklfrelafasgnkiYvLilNglkk 99 
                 ++   +l+e++  +d+ae++ +fD  +++++  a+gn+  + +l gl++
  KIR66197.1 118 DELSRILEEMRAAADDAEKLIRFDTAFHHTVVAATGNETLTSLLDGLSS 166
                 455889********************************99999999964 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00064      0.95      29      65 ..      30      65 ..       1      72 [. 0.85
   2 ?    2.7   0.1      0.11   1.6e+02      14      47 ..     192     225 ..     186     226 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00064
                HHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCE CS
        Rrf2 29 eeiaerqnispsylekilakLrkaglvksvrGkgGGy 65
                 ++a+++++s+s ++  ++ L+ a ++ ++rG  G y
  KIR66197.1 30 PQLAAQMGLSRSGVREAVKVLESARVLDVRRGD-GTY 65
                589*****************************9.655 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.11
                 HHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHH CS
        Rrf2  14 llyLakeeeeepvsseeiaerqnispsylekila 47 
                  +yLa++++++ ++ ++   ++n+s+  l+++la
  KIR66197.1 192 AIYLALRARDQLLAQASALMHVNTSEAWLRRVLA 225
                 589******9998888888999*********996 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.4e-05     0.065      10      52 ..      32      72 ..      29      78 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.4e-05
    HTH_CodY 10 iaDriGitrsvivnaLrkLesaGiiesrsLGmkGtYlkvlnek 52
                +a ++G+ rs +  a++ Lesa +++ r     GtY+  l  +
  KIR66197.1 32 LAAQMGLSRSGVREAVKVLESARVLDVRR--GDGTYVTSLAPR 72
                7899**********************996..379998777655 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00031      0.46      20      43 ..      31      54 ..      30      63 .. 0.88
   2 ?   -1.9   0.2       2.2   3.3e+03      26      35 ..     163     172 ..     163     173 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00031
      HTH_11 20 eLAeeLnvSrrtvrrdIkaLeelg 43
                +LA ++++Sr+ vr  +k Le++ 
  KIR66197.1 31 QLAAQMGLSRSGVREAVKVLESAR 54
                79******************9975 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.2
      HTH_11  26 nvSrrtvrrd 35 
                 ++S rtvr +
  KIR66197.1 163 GLSSRTVRAR 172
                 579****975 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.019        28      16      29 ..       9      22 ..       7      26 .. 0.88
   2 ?    1.6   0.0      0.22   3.2e+02       6      22 ..      31      47 ..      30      62 .. 0.84
   3 ?    1.3   0.1      0.26   3.9e+02      10      27 ..     161     178 ..     159     180 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.019
      HTH_17 16 stvyrlirrgelpa 29
                ++++ +i++gelp+
  KIR66197.1  9 AKIRSMIQSGELPP 22
                589*********98 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.22
      HTH_17  6 EaAelLgvsrstvyrli 22
                ++A+  g+srs v++ +
  KIR66197.1 31 QLAAQMGLSRSGVREAV 47
                788999*******9977 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.26
      HTH_17  10 lLgvsrstvyrlirrgel 27 
                 l g+s +tv+  + rg +
  KIR66197.1 161 LDGLSSRTVRARVWRGLI 178
                 5699******98999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1668.66
//
Query:       KIR66198.1  [L=803]
Description: galactosylceramidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.4e-113  377.7   0.8   4.5e-113  377.3   0.8    1.2  1  Glyco_hydro_59   Glycosyl hydrolase family 59
    5.6e-27   94.5  11.1    1.5e-26   93.1  11.1    1.8  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    1.5e-26   93.0  20.8    3.7e-13   50.0   1.4    5.9  6  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    1.7e-08   34.6   0.1    3.6e-06   27.1   0.1    2.5  1  Glyco_hydro_59M  Glycosyl hydrolase family 59 central domain
    8.5e-06   26.0   5.2    8.5e-06   26.0   5.2    4.4  6  Laminin_G_3      Concanavalin A-like lectin/glucanases superf


Domain annotation for each model (and alignments):
>> Glyco_hydro_59  Glycosyl hydrolase family 59
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  377.3   0.8  1.3e-116  4.5e-113       1     294 []      53     352 ..      53     352 .. 0.96

  Alignments for each domain:
  == domain 1  score: 377.3 bits;  conditional E-value: 1.3e-116
  Glyco_hydro_59   1 fdGiGav.sagatsrLLldYkeeqrseiLdyLFkpkfgaslqilkveiGgdanstsGtepshkrseeeladverGyefwlakeAkkrnpdikldi 94 
                     fdG+Gav ++g++srLL+dY+e+qr +iLdyLFkp++gaslqilkveiGgd+nstsG+epsh++ + +l d++rGye+w++++Ak rnp+ikl +
      KIR66198.1  53 FDGLGAVsGGGGNSRLLIDYPEPQRGQILDYLFKPNYGASLQILKVEIGGDTNSTSGSEPSHSHFRGDL-DCNRGYEWWIMEQAKLRNPNIKLVG 146
                     9******999***********************************************************.9************************ PP

  Glyco_hydro_59  95 leWgaPgwlkksaekasektaeylkswlkgakktygldidyiaglrnekeydkdyvktlrkaLdkngykkvklvaadeaat.wsiakelakdsel 188
                     l+WgaPgw++ + +++s+++++y  swl +a k+++l+idy+++++ne+ yd++++ +lr+aL++ngy  vkl+  d+    w+ a+  +++++l
      KIR66198.1 147 LAWGAPGWIG-NGTFMSQDSIDYHLSWLGCA-KQHNLTIDYLTAAQNERLYDANWTINLRTALNNNGYAGVKLIFGDDYPGsWNPANVAVNNAAL 239
                     *********6.89***************999.77***************************************999965555************* PP

  Glyco_hydro_59 189 kdavdvvglHytt.......ekss.snaealgkplwasEdlssknseegaldlarrinknyvkgkmtkyilwpliaaiyegvsyakkglikAneP 275
                     ++a+dv+g Hy++       +++  +na+a+g++lw+sE+ +s+++++ga+ lar in+ y++gkmt+yi+w+li+a++ ++++a+ gl+ An+P
      KIR66198.1 240 RNAIDVIGGHYPCgylaaqtTCTVsANATATGETLWNSEG-GSQDYNDGAKPLARGINRGYIDGKMTAYINWNLIGATTTNIPWATVGLMLANQP 333
                     **************99987633333559999999******.999**9************************************************ PP

  Glyco_hydro_59 276 WsGyyevdagiwavahttq 294
                     WsG+y v+++ w++ahttq
      KIR66198.1 334 WSGWYAVGKNSWTLAHTTQ 352
                     ******************8 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1  11.1   4.1e-30   1.5e-26       2     127 .]     677     800 ..     676     800 .. 0.97

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 4.1e-30
                     EEEEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEETTSEEEETT.TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTTEEE CS
  Ricin_B_lectin   2 sgeirnvasgkCLdvegeska.gapvglydChgskgkQlwtltkdgeirskaqselCldvs..staegakvvlakChkgkgnqrWefdkdgtqir 93 
                     ++ +rn++ g CLdv+++s++ g++++l+dC+++ + Q+wt t+ +++++   + +Cld++  +t++g++v++++C+ g++nq+W++++dgt i 
      KIR66198.1 677 QVSLRNTNAGRCLDVPSQSQTnGTQLTLWDCNSGPN-QQWTQTAGKQLQVY--GTKCLDAEgaGTSSGTRVIIWDCT-GGTNQQWNLNTDGT-IT 766
                     6789******************************77.*************5..9**********************9.999***********.** PP

                     ETTTSEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  94 hkksgkCLdvkgasksne.klilkkcdsgsdsQkW 127
                       +sg+CL+ +g++++n+ ++++++c +g +sQkW
      KIR66198.1 767 GVQSGLCLSPTGGGTANGtQVVISTC-TGGNSQKW 800
                     ************************99.******** PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2       1.4   5.2e+03      67      67 ..     372     372 ..     316     401 .. 0.61
   2 ?    0.8   0.9      0.23   8.2e+02      21      66 ..     400     449 ..     371     469 .. 0.66
   3 ?    0.8   0.1      0.24   8.6e+02      46      83 ..     575     613 ..     549     616 .. 0.58
   4 !   38.1   1.9   5.5e-13     2e-09      11      56 ..     674     718 ..     662     727 .. 0.84
   5 !   50.0   1.4     1e-16   3.7e-13      23      87 ..     728     788 ..     722     789 .. 0.94
   6 !   33.1   2.8     2e-11   7.1e-08       2      53 ..     754     801 ..     754     803 .] 0.94

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
                      T CS
  RicinB_lectin_2  67 k 67 
                      +
       KIR66198.1 372 R 372
                      1 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.23
                      SSSEEEECGCCTBCTTEEEEEE-TT.T-GGCEEE....EECCESSEEEEEE CS
  RicinB_lectin_2  21 asgkvLdvaggstanganvqqwtcs.gaanqqWr....ledtgdgtyrivn 66 
                      a ++ L+v+gg  + +++v+  + + ++++ ++     +++ g g+y+++ 
       KIR66198.1 400 AQTLNLSVTGGLSTGSVRVWSTNLNsNNTADHFVrgadITPSG-GNYSLTV 449
                      4456667777766656666666655688888888555556666.6777765 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.24
                      T-GGCEEEEECCESSEEEEEETTTT.EEEEECGCS-..STT CS
  RicinB_lectin_2  46 gaanqqWrledtgdgtyrivnkasg.kvLdvaggst..anG 83 
                      +a+n  +  +++g g ++i  ++++ ++ ++  ++t  a G
       KIR66198.1 575 SAQNAYFLRVTDG-GAWSILRNNTSnQLTTLR-SGTvaALG 613
                      5555555544444.666655544441555555.55545555 PP

  == domain 4  score: 38.1 bits;  conditional E-value: 5.5e-13
                      TTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEEC CS
  RicinB_lectin_2  11 gdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrled 56 
                      g+ +++++n + g++Ldv+++s++ng+++  w+c++++nqqW+ ++
       KIR66198.1 674 GGTQVSLRNTNAGRCLDVPSQSQTNGTQLTLWDCNSGPNQQWT-QT 718
                      3447**************************************9.33 PP

  == domain 5  score: 50.0 bits;  conditional E-value: 1e-16
                      SEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEE CS
  RicinB_lectin_2  23 gkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvq 87 
                      +k+Ld++g++t++g++v  w+c+g++nqqW l+++g    +i+ ++sg++L  +gg+tanGt+v 
       KIR66198.1 728 TKCLDAEGAGTSSGTRVIIWDCTGGTNQQWNLNTDG----TITGVQSGLCLSPTGGGTANGTQVV 788
                      79******************************8888....9**********************96 PP

  == domain 6  score: 33.1 bits;  conditional E-value: 2e-11
                      CGEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEE CS
  RicinB_lectin_2   2 nQqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWr 53 
                      nQqW+l    +   ti+ v+sg++L+ +gg+tang++v+ +tc+g+++q+W+
       KIR66198.1 754 NQQWNL----NTDGTITGVQSGLCLSPTGGGTANGTQVVISTCTGGNSQKWT 801
                      8*****....4556*************************************8 PP

>> Glyco_hydro_59M  Glycosyl hydrolase family 59 central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1     1e-09   3.6e-06       8     115 ..     371     463 ..     364     464 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1e-09
  Glyco_hydro_59M   8 LekgGsyvaLtd.gkgnltiiiEtmshehskCirpplpkykvseQkatfkLkGsfkkikklqvwysklkfkseksvlfkklskikvsegsisle 100
                       +++Gsyv+L + ++ + t ++Etm                 ++Q+ ++++ G + +  +++vw+++l+ ++ +  +f +  +i+ s g+ sl+
       KIR66198.1 371 ARNNGSYVSLKSpNNSDYTTVVETMDAT--------------AAQTLNLSVTGGL-STGSVRVWSTNLNSNN-TADHFVRGADITPSGGNYSLT 448
                      5789*********************865..............57999*******9.5689*********999.8889999999*********** PP

  Glyco_hydro_59M 101 levdevytlttlttg 115
                      ++   +yt+tt+t g
       KIR66198.1 449 VQPGYLYTITTTTGG 463
                      ***********9875 PP

>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       4.3   1.5e+04     121     138 ..     107     123 ..     100     127 .. 0.67
   2 ?   -3.4   0.0       2.6   9.5e+03      91     126 ..     301     333 ..     299     342 .. 0.58
   3 ?   -0.4   0.4      0.33   1.2e+03      15      60 ..     348     391 ..     335     411 .. 0.59
   4 ?    2.5   0.7      0.04   1.4e+02      17      74 ..     412     471 ..     396     477 .. 0.67
   5 !   26.0   5.2   2.4e-09   8.5e-06      15     110 ..     542     645 ..     530     668 .. 0.74
   6 ?   -1.5   0.3      0.68   2.4e+03      67     114 ..     700     747 ..     655     769 .. 0.54

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 4.3
  Laminin_G_3 121 viGrdpggddpfdGlide 138
                  + G++p+  ++f+G++d 
   KIR66198.1 107 TSGSEPS-HSHFRGDLDC 123
                  4455554.7999999997 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.6
  Laminin_G_3  91 ggtlrlYvNGvevgsatltggllsatsgplviGrdp 126
                  +g+++ Y+N +++g +t +  +++at g l++ ++p
   KIR66198.1 301 DGKMTAYINWNLIGATTTN--IPWATVG-LMLANQP 333
                  5678888888888877543..3443333.4555555 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.33
  Laminin_G_3  15 p.tssfTvsaWvkpdslpsaaqiiis.sssdgrgfelgldgsgrlrfs 60 
                  + t++fT   W ++ds+++    +i  + ++g++ +l+  ++ +++  
   KIR66198.1 348 AhTTQFTAPGWKYLDSSSG----FIGgARNNGSYVSLKSPNNSDYTTV 391
                  4488999999999999997....4432233334555555444444433 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.04
  Laminin_G_3  17 ssfTvsaWvkpdslpsaaqiiis....sssdgrgfelgldgsgrlrfsvnagngaeesvtsg 74 
                  s+ +v +W    +++++a ++++    + s+g +++l+++++  +++++ +g+ +  ++ts+
   KIR66198.1 412 STGSVRVWSTNLNSNNTADHFVRgadiTPSGG-NYSLTVQPGYLYTITTTTGG-GKGTATSP 471
                  45688899766666666778887777645666.9*****99776666666664.44455554 PP

  == domain 5  score: 26.0 bits;  conditional E-value: 2.4e-09
  Laminin_G_3  15 ptssfTvsaWvkpdslp..saaqiiis.....sssdgrgfelgldgsgrlrfsvnagngaeesvtsgasvpa..geWtHvavtydggtlrlYvNGvev 103
                  + +++Tvsa v +++++  + ++++ s      s ++  + l+++++g +++  n++ ++ ++++sg+ +++  ++W+ +a  ++g+t++  v+Gv v
   KIR66198.1 542 NWNNYTVSADVLLEKAGyvQLEGRVGSqnldpVSAQN-AYFLRVTDGGAWSILRNNTSNQLTTLRSGTVAALgtNRWHSLALGFSGSTITATVDGVTV 638
                  5567777777777776522222333333444445566.9******************999**999888555545************************ PP

  Laminin_G_3 104 gsatltg 110
                  g+at+++
   KIR66198.1 639 GTATDSS 645
                  ***9876 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 0.68
  Laminin_G_3  67 aeesvtsgasvpageWtHvavtydggtlrlYvNGvevgsatltgglls 114
                  ++ ++   +s p  +Wt+ a+       + +++ + +g++++t  +++
   KIR66198.1 700 TQLTLWDCNSGPNQQWTQTAGKQLQVYGTKCLDAEGAGTSSGTRVIIW 747
                  222444555666677777766555555555566666666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.48
# Mc/sec: 5002.57
//
Query:       KIR66199.1  [L=422]
Description: sugar ABC transporter substrate-binding protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-27   97.3   0.6    1.8e-27   96.9   0.6    1.1  1  SBP_bac_8  Bacterial extracellular solute-binding protein
    8.4e-24   85.1   3.6    1.6e-23   84.2   3.6    1.4  1  SBP_bac_1  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.9   0.6     2e-31   1.8e-27       3     266 ..      57     357 ..      55     369 .. 0.77

  Alignments for each domain:
  == domain 1  score: 96.9 bits;  conditional E-value: 2e-31
                 HHHHHHH-.TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH..-HHHHHTT--TS.----EEEEEEE-EEE CS
   SBP_bac_8   3 akefekkt.gvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnldd..ltdalaavgydgklygvPyasetpyvli 98 
                  ++f  k+ gv+v++v ++ +++ + l +a+++g++pd++++ + +++++  + +++l +l+++   d   l +  +a++ dg +y+ P++ +  + ++
  KIR66199.1  57 KADFARKHpGVTVEFVAQPHDQYYTLLGTAIQSGKGPDVILFNG-GGQIR--DRADALLPLDEYVAEDRqrL-AGWDAFTKDGRTYAGPVTLQG-HPIY 150
                 689***********************************876666.68999..6668******6544444223.45677899************6.9*** PP

                 EEHHHHHHS......---BHHHHHHHHHHHHHH-SE....GG---G.GGGGGTHH.ETTEE---H............HHH.HHHHHHHHHHHHTT-... CS
   SBP_bac_8  99 ynkdlleka.....edpktwdellaaakklkgkfgl....pdpasg.wlqaalla.kdgksldddg..........gkdglkealellkklkdngk... 173
                 yn +l+eka     ++ +tw e++a ++++++++g+      + +g   q++l a  +g+ + + +          +++ +k++++l+k+++d++    
  KIR66199.1 151 YNRALYEKAgldpaKPAATWPEFVANCAAITKQTGTkcfaLGNKEGiGIQFFLSAfGSGVLTPQEYdawiagkrdwTSPHVKRIFALWKETQDAKLnsd 249
                 ********999999999*************999966444423334423344444464444444444444453334567777***********9997556 PP

                 EE-S.....--SSTTTTTSBSEEEE-TTHHHHHH-TTT.....SEEEE.--......S--EEEEEE.EEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHH CS
   SBP_bac_8 174 tydtg...adavsefanGevaftingswdiaaaqkagk.....klgai.vp......kqgsfaggk.glavpknaknedlaAldFlkwltspenqaala 256
                  +++    +da + f++ ++  +i+  +di  +++ g+     k+g++ +p       ++++ +g  g+ v   + +++l A+d+++ lts ++ +a++
  KIR66199.1 250 GPNSTamfNDAFAIFQSAKASHVIGLMSDIGHWKDFGEflpadKIGVMrAPvvvpgaTPSLPFDGGiGYGVARWTRDPKL-AADLVRSLTSTDALTAFH 347
                 6666612356666666******************887445555999988776655665566666664899*********9.****************** PP

                 HHH---BS-S CS
   SBP_bac_8 257 ektgyipvnk 266
                 e+ g i + +
  KIR66199.1 348 EQAGAIAADT 357
                 **99987655 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   3.6   1.8e-27   1.6e-23       5     312 ..      47     341 ..      43     344 .. 0.74

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 1.8e-27
                 HHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEE.CGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHH CS
   SBP_bac_1   5 tegaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviav.dndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkil 102
                 ++ a + + + ++f ++hpg++Ve++ ++ +++++ l +ai++G+gp Dvi   ++++i++   a++llpld+yv+++      +  +  ++ ++++ +
  KIR66199.1  47 ASAAQYIEKAKADFARKHPGVTVEFVAQPHDQYYTLLGTAIQSGKGP-DVILFnGGGQIRDR--ADALLPLDEYVAED------RQRLAGWDAFTKDGR 136
                 4556677777577**********************************.************75..566***********......566667777777666 PP

                 CEEEES.EEEE.EEEEEEEETTTHHCTTGGG...SHBHHHHHHHHHHHHHHCTCT.........HCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTH CS
   SBP_bac_1 103 dskvly.vPly.aargliYNkdlfekagldp...pwtWdelveaakklkekgkkp.........iggarggsasgtayyfalalakslggkvfdkdggg 187
                 +    y  P+  +  +++YN  l+ekagldp     tW e+v+ +  ++++++++         ig++++ sa g + ++ +++ ++ +          
  KIR66199.1 137 T----YaGPVTlQGHPIYYNRALYEKAGLDPakpAATWPEFVANCAAITKQTGTKcfalgnkegIGIQFFLSAFGSGVLTPQEYDAWIA---------- 221
                 6....66699966********************99********************7777777766666666666666666666555555.......... PP

                 HCSHHHHSHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHH.......TTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTT CS
   SBP_bac_1 188 ldnpegvtaatylvklyavanltkelkgkgaenkdgaaalalfe.......aGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkgg 279
                    ++  ++   ++  +a +    + +++ ++n+dg++ +a+f+       + +a   i   +++  ++        ++    p +++gv   P + +g
  KIR66199.1 222 ---GKRDWTSPHVKRIFALW----KETQDAKLNSDGPNSTAMFNdafaifqSAKASHVIGLMSDIGHWK--------DFGEFLPADKIGVMRAPVVVPG 305
                 ...33333444444444444....455555555555555555543333332555555554444444444........7777777788888888888888 PP

                 TSEE...EEEEEEEEBTTCSTHHHHHHHHHHHTSHH CS
   SBP_bac_1 280 kpgi...lgayglaipkgsknpeaAkkFldfllspe 312
                 ++++    g+ g+++   + +p+ A ++++ l+s +
  KIR66199.1 306 ATPSlpfDGGIGYGVARWTRDPKLAADLVRSLTSTD 341
                 888889666666999999999999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3396.47
//
Query:       KIR66200.1  [L=275]
Description: sugar ABC transporter permease [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-11   44.1  13.4    1.8e-11   44.1  13.4    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   4.0    0.0035        63      99     168 ..       9      86 ..       4     100 .. 0.77
   2 !   44.1  13.4     1e-15   1.8e-11       3     172 ..      85     260 ..      84     269 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0035
  BPD_transp_1  99 rkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis............nggvlalviavlll 168
                   +  +lP+al  ++t  +l+f++++   +  e+++        l +a+ + +++ +             +g+v a v+++ll+
    KIR66200.1   9 WLLALPMALLALATIYPLVFTANVAMKTRREYVL----DRFSLADALRWENVATAWntvdmarylansVGTVTASVVLLLLF 86 
                   6689********************9999999999....88888888888888877788998888885544444444444443 PP

  == domain 2  score: 44.1 bits;  conditional E-value: 1e-15
  BPD_transp_1   3 llGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilg..hlilpviillllsaapyvrlirraalrslpkdlveaaralGasr 94 
                   l+G++a+    + +++++ +l     +   +P+ v++++l     i+ ++g  ++  +++++++ +++p++++++ ++ r++p++ v aar++G s 
    KIR66200.1  85 LFGSMAGfalSQLRFRGSSVLFLGCLAAVFVPFQVIMVPLN---RIMADAGlvDTYPGLVLAYVAQFLPFTIYLMTSYYRTIPTEIVDAARIDGNSV 178
                   67888887777899999999999999999**********99...566666632566669999*********************************** PP

  BPD_transp_1  95 wqifrkvvlPnalppiitglilafggllggavlleflgswpG.....lgtllleailgydyseisnggvlalviavlllnlva 172
                     ++r+++lP+  p +++  il + + +++ +++++l+ +       +g + l+ + + d++  +  gvl+++i vl++ l++
    KIR66200.1 179 YGVYRRIMLPLGTPALLSVGILDALFCWNDVLIALLLMPSAEhrtlmVGVTSLRGQYSADIPTFA-SGVLIAAIPVLVVYLLL 260
                   **************************************666596666666666666666666444.66666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1921.57
//
Query:       KIR66201.1  [L=412]
Description: racemase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-42  144.2   1.5    4.2e-42  144.2   1.5    1.7  2  MR_MLE_C  Enolase C-terminal domain-like
    8.9e-10   38.8   0.5    2.7e-09   37.2   0.5    1.8  1  MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   1.5   4.6e-46   4.2e-42       8     219 ..     145     349 ..     139     351 .. 0.90
   2 ?   -1.2   0.2      0.14   1.2e+03     138     167 ..     374     402 ..     359     408 .. 0.69

  Alignments for each domain:
  == domain 1  score: 144.2 bits;  conditional E-value: 4.6e-46
                 HHHHHHT-SEEEEETSSSHHHHHHHHHHHHHHHHTT...TSTSEEEEE-TTTSBHHHHHHHHHHHGG.GTESEEESSSSTTTHHHHHHHHHHHH.SSEE CS
    MR_MLE_C   8 elvaeqgfravKlkvggddvaedvervravreavgp...gddvdlmvDanqawdlatAirvarelee.ldllwlEEPvppeddleglaelrara.sipi 101
                 e +a++g ra Klk gg d+++d +r+ +vr+++ +   g++  lm+D+n+aw++++A+r + ele  ldl w+EEPv+++ d egla++ +   +  +
  KIR66201.1 145 EGYARHGLRAAKLK-GGLDIERDRDRLHLVRNVLTDaahGQRPGLMLDVNEAWTRKQAVRHVCELERtLDLVWIEEPVRRW-DAEGLAAVGQ-GiRASV 240
                 346678********.9999*************99777778888**********************999************6.6********5.4478** PP

                 EESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCSSHHHHHHHHHHHHTTTTBEEEEEEGGGGHTSGCSBSSSSEEE CS
    MR_MLE_C 102 aagEslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgsgglglaaslhlaaaipnllileyfldaelleeelleepleve 200
                 a+gE+l++++++r+ll+agavd+vq+ + +  G+t +++v ala+af++pv+p ++ +++gl   lh a+++pn l+ e    +       ++ +l v+
  KIR66201.1 241 ATGENLTGLEQYRPLLAAGAVDVVQAAAVW--GVTHFLRVSALAHAFDLPVSPIGN-SPVGL---LHAATSVPNHLVSELQDLHA---PVGVSLDLHVS 330
                 *************************98766..9*********************94.67877...8*************999985...77788899*** PP

                 TTEEECTSSSBTSSEB-HH CS
    MR_MLE_C 201 dGrvtvpdgpGlGveldee 219
                 dG + + d+pGlGv++ ee
  KIR66201.1 331 DGAFVLGDSPGLGVTVAEE 349
                 ***************9965 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.14
                 HHHHHHHHHHTT-EEEEBSCSSHHHHHHHH CS
    MR_MLE_C 138 arkvaalaeafgvpvapHsgsgglglaasl 167
                  r+++a+a++++ +  pH+     g  a++
  KIR66201.1 374 GRRLLAVADHAHATARPHAT-VRPGAPAHT 402
                 48899999999999999993.345555555 PP

>> MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.5     3e-13   2.7e-09      28     117 .]      33     118 ..       8     118 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 3e-13
                 EEEEEEEECTTEEEEEEEE-STTGHHHHHHHHHHHHHHHHTTSBTTHHHHHHHHHHHHCSS......CHHHHHHHHHHHHHHHHHHTTSBHHHHTT CS
    MR_MLE_N  28 lvlvkietseGvvGigeatsvggraetikaelddhlapllvgkdaanisdlaqllkravlg......nmsAkaaidmAlwDlkakalnlpladLlG 117
                 + +v +et+eG++G+g  ++ g         +++ + ++l g+d+  +  l   + r+ +           + a+d+AlwD+ka+a+++pl+ LlG
  KIR66201.1  33 VPIVLVETDEGITGVGL-GPHG--------DIEN-IFAALHGEDPRAVTSLYDRMLRQTFKaghagsVFGTIGALDTALWDIKAQAAGQPLWRLLG 118
                 457889999******95.4555........6777.8889*******************999677776666789**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2905.32
//
Query:       KIR66202.1  [L=798]
Description: ricin B lectin [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-28   97.4  13.1    6.9e-28   97.4  13.1    2.2  2  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    9.3e-26   90.4  23.5    4.9e-14   52.8   6.2    5.1  5  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
  ------ inclusion threshold ------
       0.55    9.2   2.9          1    8.3   2.9    1.3  1  Chloroplast_duf  Petal formation-expressed
        1.3    9.4   6.2          9    6.7   0.2    3.5  3  ET               ET module


Domain annotation for each model (and alignments):
>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.9      0.45     2e+03      11     104 ..     550     640 ..     541     658 .. 0.53
   2 !   97.4  13.1   1.5e-31   6.9e-28       3     127 .]     672     794 ..     670     794 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.45
                     GEEEEETTCTTSTEBEEEEE-TSCCGGGEEEEETTSEEEETT.TTEEEEESSSSTTSBEEEEETTTTSG.GGCEEEETTTTEEEETTTSEEEEES CS
  Ricin_B_lectin  11 gkCLdvegeskagapvglydChgskgkQlwtltkdgeirskaqselCldvsstaegakvvlakChkgkg.nqrWefdkdgtqirhkksgkCLdvk 104
                     g C+ + +++  ga+++ + C  ++g  ++ l+ d+  r    ++  +++++t  +a+ ++a+  ++ + ++ W+ +++++ + + ++g++++ +
      KIR66202.1 550 GGCIYTLSANP-GATINENYCLRTNG--WFGLYFDEGSRYYTARNNVFSSTGTWATANYWYAENMGNFTvTNNWSTNNSTN-VTNGDRGNVVNNN 640
                     55555555555.55666666655534..44444444444444444444444222222222222222333467788775555.8888877777665 PP

  == domain 2  score: 97.4 bits;  conditional E-value: 1.5e-31
                     EEEEETTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEETTSEEEETT.TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTTEEEE CS
  Ricin_B_lectin   3 geirnvasgkCLdvegeska.gapvglydChgskgkQlwtltkdgeirskaqselCldvs..staegakvvlakChkgkgnqrWefdkdgtqirh 94 
                     ++i++v+sg C ++ g+s++ g++++l+dC g+++ Q+wt t+ +++++   + +Cld+s  +t++g++vv+++C+ g++nq+W+++ +gt i  
      KIR66202.1 672 VQIVGVQSGRCAEIGGSSTTnGTQAQLWDCVGAAN-QRWTQTAGKQLMVY--GTKCLDASgqGTSNGTQVVIWDCN-GQANQQWNVNANGT-ITG 761
                     689******************************88.************95..9**********************9.**************.*** PP

                     TTTSEEEEESTTSSTTT.BEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  95 kksgkCLdvkgasksne.klilkkcdsgsdsQkW 127
                     ++sg+CLd++ga+++n+ klil++c +g ++Q+W
      KIR66202.1 762 AQSGLCLDANGAGTANGtKLILWAC-NGGANQQW 794
                     ***********************99.******** PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.8   8.3e+03      24      24 ..     115     115 ..      82     149 .. 0.50
   2 ?   -1.6   4.5         1   4.6e+03      36      78 ..     590     631 ..     555     654 .. 0.67
   3 !   32.1   1.9   3.2e-11   1.4e-07      13      56 ..     670     712 ..     660     720 .. 0.87
   4 !   52.8   6.2   1.1e-17   4.9e-14      23      89 .]     722     784 ..     716     784 .. 0.96
   5 !   33.5   0.9   1.2e-11   5.4e-08      16      55 ..     758     797 ..     756     798 .] 0.95

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.8
                      E CS
  RicinB_lectin_2  24 k 24 
                       
       KIR66202.1 115 S 115
                      2 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1
                      TEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTT.EEEEECGC CS
  RicinB_lectin_2  36 ganvqqwtcsgaanqqWrledtgdgtyrivnkasg.kvLdvagg 78 
                        nv  +t ++a++  W+ e+ g  +++++n+ s     +v++g
       KIR66202.1 590 RNNVFSSTGTWATANYWYAENMG--NFTVTNNWSTnNSTNVTNG 631
                      45666666778888888876555..6666665444244444433 PP

  == domain 3  score: 32.1 bits;  conditional E-value: 3.2e-11
                      TEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEEC CS
  RicinB_lectin_2  13 gyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrled 56 
                        ++i+ v+sg++ ++ g+st+ng+++q w+c+gaanq+W+ ++
       KIR66202.1 670 QGVQIVGVQSGRCAEIGGSSTTNGTQAQLWDCVGAANQRWT-QT 712
                      4599************************************9.33 PP

  == domain 4  score: 52.8 bits;  conditional E-value: 1.1e-17
                      SEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  23 gkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvqqw 89 
                      +k+Ld++g++t+ng++v+ w+c+g+anqqW ++ +g    +i+ ++sg++Ld +g++tanGt++++w
       KIR66202.1 722 TKCLDASGQGTSNGTQVVIWDCNGQANQQWNVNANG----TITGAQSGLCLDANGAGTANGTKLILW 784
                      79******************************8888....9*************************9 PP

  == domain 5  score: 33.5 bits;  conditional E-value: 1.2e-11
                      EEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEE CS
  RicinB_lectin_2  16 tiknvasgkvLdvaggstanganvqqwtcsgaanqqWrle 55 
                      ti+ ++sg++Ld++g++tang+++  w+c+g+anqqW l+
       KIR66202.1 758 TITGAQSGLCLDANGAGTANGTKLILWACNGGANQQWSLR 797
                      7999*********************************985 PP

>> Chloroplast_duf  Petal formation-expressed
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.9   0.00023         1      39      95 ..      17      69 ..      11      89 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00023
  Chloroplast_duf 39 ltaavmaglaaasssgapllalklsstlllaaatgllavvnkiqPsqLaeeqRnatR 95
                     ++aa++a+ aa+ ++  ++ al++ +t l+a+ +g  ++ +  qP  L+e q na+R
       KIR66202.1 17 VAAATLAAAAAVFAA--ATPALAA-TTTLYASPAGSGTACSASQPCSLTEAQ-NAVR 69
                     678888887776665..5666655.5678999999**************998.5555 PP

>> ET  ET module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2     0.002         9      21      44 ..     679     702 ..     660     708 .. 0.89
   2 ?    3.1   0.9     0.027   1.2e+02      13      47 ..     712     747 ..     702     771 .. 0.70
   3 ?    0.7   0.1      0.15   6.9e+02      21      44 ..     764     787 ..     747     790 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.002
          ET  21 dGeCasvsltttvngqnvtlytCd 44 
                 +G+Ca +  ++t ng++++l+ C+
  KIR66202.1 679 SGRCAEIGGSSTTNGTQAQLWDCV 702
                 5**********************8 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.027
          ET  13 stgaevaCdGe.CasvsltttvngqnvtlytCdpts 47 
                 ++g++ +  G+ C  +s ++t ng++v ++ C  + 
  KIR66202.1 712 TAGKQLMVYGTkCLDASGQGTSNGTQVVIWDCNGQA 747
                 566666777766********************8764 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.15
          ET  21 dGeCasvsltttvngqnvtlytCd 44 
                 +G C  ++  +t ng+++ l++C 
  KIR66202.1 764 SGLCLDANGAGTANGTKLILWACN 787
                 599*****9**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 5727.13
//
Query:       KIR66203.1  [L=194]
Description: TetR family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-11   43.4   0.1      7e-11   41.7   0.1    2.0  1  TetR_N     Bacterial regulatory proteins, tetR family
    9.3e-10   39.2   3.6    9.3e-10   39.2   3.6    2.0  2  TetR_C_33  Tetracyclin repressor-like, C-terminal domain
     0.0012   19.1   0.0      0.003   17.8   0.0    1.7  1  TetR_C_24  Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
        0.2   11.9   0.0       0.27   11.6   0.0    1.2  1  TetR_C_10  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.1   1.6e-14     7e-11       1      47 []      13      59 ..      13      59 .. 0.98

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1.6e-14
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                +l+aA++ + ++G +++++re+A++AGvs +a  r+Fp++++Ll+al
  KIR66203.1 13 LLAAAERSLRQHGAEQLSLRELAREAGVSHAAPRRHFPDRQALLDAL 59
                79******************************************996 PP

>> TetR_C_33  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.8       0.5   2.2e+03      50      54 ..      55      59 ..      11      81 .. 0.55
   2 !   39.2   3.6   2.1e-13   9.3e-10       1     101 [.      86     184 ..      86     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.5
                HHGGG CS
   TetR_C_33 50 alaal 54
                +l+al
  KIR66203.1 55 LLDAL 59
                22222 PP

  == domain 2  score: 39.2 bits;  conditional E-value: 2.1e-13
                 HHHHHHHHHHHHHH-HHHHHHCCSS--TT-S-HGHHCCCCHHHHHHHHHHHGGG---TH-.-CCHHHHHHHHHHHHHHHHHHHHCTTTTSSS-HHHHHH CS
   TetR_C_33   1 lralarayrrfAlahpaeYallfgspvpgyaapdelaaagarvlalllaalaalvaaglp.padavaaaralwaalhGlvsLelfghfglpadpdalfe 98 
                 l+a+a ay+rfA ++ a+ +l+f  +++  a +d l++a+a +++l+ +++a+ +a+g+  p+d+ ++ ++l+a+l G+++L ++g++  p+ +d  ++
  KIR66203.1  86 LHAIAAAYLRFATEDAALLELMFTRKHR--AGADHLVEAAAAPFGLMHDLIAQGQAQGALePGDPQRVGVVLFATLQGIATL-VNGNLVAPELLDGIVQ 181
                 78*********************33333..33469*****************999999986888*****************9.5666634555555555 PP

                 HHH CS
   TetR_C_33  99 rlv 101
                  +v
  KIR66203.1 182 TAV 184
                 555 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   6.6e-07     0.003       7      89 ..      85     164 ..      79     186 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 6.6e-07
                 HHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB-SS-HHHHHHHHHHHHHCHHH CS
   TetR_C_24   7 rLralvrahveviaeereeaavllrelraLspehreeiralrreyerllrdlieeGvaagefedldpklaalailgmlnwvyr 89 
                 rL+a+ +a++++ +e+ +   ++++  +   ++h   +++   +   l+ dli++G+a+g +e+ dp+ +  +++ +l+++++
  KIR66203.1  85 RLHAIAAAYLRFATEDAALLELMFTRKHRAGADH---LVEAAAAPFGLMHDLIAQGQAQGALEPGDPQRVGVVLFATLQGIAT 164
                 9********************9999966655555...56777888999****************************9999875 PP

>> TetR_C_10  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.9e-05      0.27      29     108 ..      89     167 ..      64     185 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.9e-05
   TetR_C_10  29 vfqrlvefakeneqaflflethkdakyLdeeskelfeelmdfltdliekGkekGvirslpskaliaivygallklyklle 108
                 +  + + fa e++  + ++ t+k+    d+  ++     +++++dli +G+++G + + +++ + ++ + +l+ +  l++
  KIR66203.1  89 IAAAYLRFATEDAALLELMFTRKHRAGADHLVEAAA-APFGLMHDLIAQGQAQGALEPGDPQRVGVVLFATLQGIATLVN 167
                 555666777777766555555555444444443333.3357899******************999999999998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1456.95
//
Query:       KIR66204.1  [L=300]
Description: oxidoreductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-26   90.8   0.0    7.8e-25   87.5   0.0    2.0  1  adh_short       short chain dehydrogenase
    8.4e-16   58.2   0.1    4.4e-15   55.9   0.1    1.9  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    6.5e-06   25.8   0.0    7.9e-06   25.5   0.0    1.2  1  Epimerase       NAD dependent epimerase/dehydratase family
    3.2e-05   23.9   0.3    5.3e-05   23.2   0.3    1.4  1  KR              KR domain
     0.0013   18.7   4.0     0.0023   17.9   4.0    1.6  1  NAD_binding_10  NAD(P)H-binding
     0.0033   17.5   0.3      0.006   16.7   0.3    1.4  1  AdoHcyase_NAD   S-adenosyl-L-homocysteine hydrolase, NAD bind
  ------ inclusion threshold ------
      0.012   15.1   1.1      0.018   14.6   1.1    1.2  1  NmrA            NmrA-like family
      0.027   14.5   0.2        0.1   12.6   0.3    1.8  2  ADH_zinc_N      Zinc-binding dehydrogenase
       0.24   10.7   3.0       0.31   10.3   3.0    1.2  1  FAD_oxidored    FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.0   3.9e-28   7.8e-25       2     192 ..      16     209 ..      15     212 .. 0.86

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 3.9e-28
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 +v+vtGa sGIGr  a++la++Ga+vv++ r ++k  ++a+ +     ++++ ++D++d ++v+a+ e     ++++dvL+nNAG+  + p    +++ 
  KIR66204.1  16 TVVVTGANSGIGRTAARALAARGARVVLAVRDPAKGGAAAATMTG---DVVVRRLDLADLASVRAFAEGL---TEPIDVLINNAGL--MMPPLGRTADG 106
                 89**************************99999999999998886...5*****************9998...89***********..45555556667 PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEG...GGT..........SB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT..EEEEEEEESSBSS CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSv...agk..........vpvagvaaYsAsKaavagltrslakelaptg..irvnavaPGlvdT 184
                 +e  + +N  g f lt ++lp      +Gr+v+vsS+   ag            p+  ++aY+ sK a   +t +l++ l + g  +r +a +PGl +T
  KIR66204.1 107 FELQFGTNHLGHFALTNLLLPR----IRGRVVTVSSTghrAGTidfddlnwerRPYRAFPAYAQSKLANLLFTAELHRRLTEAGspVRATAAHPGLAAT 201
                 *********************9....57********8333222222222222268899***************************************** PP

                 HHHHHHCT CS
   adh_short 185 dmakelre 192
                 ++   l +
  KIR66204.1 202 NLLGHLDH 209
                 99887766 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.1   2.2e-18   4.4e-15       1     202 [.      21     226 ..      21     238 .. 0.75

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 2.2e-18
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                   Ga sgIGr +A+ala++Ga+vvl+ ++ ++    +++a+ +g   v ++D +d ++v+a++e ++e    +D+l+nnag + +     l  + ++f+
    KIR66204.1  21 GANSGIGRTAARALAARGARVVLAVRDPAKG--GAAAATMTGDVvVRRLDLADLASVRAFAEGLTE---PIDVLINNAGLMMP----PLGRTADGFE 108
                   899***********************99983..3333333444426**************999987...59*********999....577789**** PP

                   HHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBS...........TTTT...HHHHHHHHHHHHHHHHHHHHGGGT..EEEEEEEE--BHCT CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeggsivnlssvgaervv...........pnyn...aygaaKaalealtrylAvelgpkg..iRvNavspgpikTl 177
                     + +n  + f+l++ +lp ++  g++v++ss+g + ++           p      ay+ +K a   +t  l + l + g  +R  a +pg+ +T+
    KIR66204.1 109 LQFGTNHLGHFALTNLLLPRIR--GRVVTVSSTGHRAGTidfddlnwerrPY-RafpAYAQSKLANLLFTAELHRRLTEAGspVRATAAHPGLAATN 202
                   *****************99775..99******98876542222222222111.13447888888888888888888877443378888888888888 PP

                   GGGGSTTHHHHHHHHHHHSTTSS-B CS
  adh_short_C2 178 aasgikgfdelleelearaplgrlg 202
                   +  ++++ ++ll++l+  a  +rl+
    KIR66204.1 203 LLGHLDHDRSLLHRLQ-TAVTNRLA 226
                   8888877777666654.44555555 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0     4e-09   7.9e-06       1     160 [.      17     182 ..      17     288 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 4e-09
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC...EEEE--TT-HHHHHHHHHHH..T-SEEEE--S..---HHHHHHSHHHHHHHHT CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl...elveldltdrsalerlfkee..qpdavihlAa..vggvaassedpadfieknl 92 
                 ++VtGa+  iG+  ++al+++g +v+   r++ ++  a+   +    + +ldl d ++++++ +     +d+ i+ A+      +++++  +  + +n 
  KIR66204.1  17 VVVTGANSGIGRTAARALAARGARVVLAVRDPAKGGAAAATMTgdvVVRRLDLADLASVRAFAEGLtePIDVLINNAGlmMPPLGRTADGFELQFGTNH 115
                 68**********************8888888777666655555888999********9999998655499******99655556788888889999*** PP

                 HHHHHHHHHHHHHTCTEEEEEEE.GGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH CS
   Epimerase  93 qgtlnlleaarkagvkrllflsS.sevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy 160
                  g   l + +  +   r++ +sS  +  G  +   ++ + +  p++   +Ya +Kla    + ++++  
  KIR66204.1 116 LGHFALTNLLLPRIRGRVVTVSStGHRAGTIDF--DDLNWERRPYRAFPAYAQSKLANLLFTAELHRRL 182
                 **********98866688888881334443333..88899999**************988888777655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.3   2.7e-08   5.3e-05       2      93 ..      16      97 ..      15     146 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.7e-08
                EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------ CS
          KR  2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr 93
                t+++tG+  g+G++ ar la++gar +vl  R++a+  ++       + +  +v v+++D++d ++v+a  e ++   +pi   i+ Ag+++
  KIR66204.1 16 TVVVTGANSGIGRTAARALAARGAR-VVLAVRDPAKGGAA------AATMTGDVVVRRLDLADLASVRAFAEGLT---EPIDVLINNAGLMM 97
                689********************97.67778884333332......3445669****************999998...78999999998876 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   4.0   1.1e-06    0.0023       1      60 [.      21      81 ..      21     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-06
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT..TTCEEEE--TT-CCHHHHHHTT CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaeleae..eglevvegdvtdvedlaealkg 60
                    GA+ ++Gr +++ l+arg  +v++ vR+p+k  + +a+    + v  +d+ d +++++  +g
      KIR66204.1 21 GANSGIGRTAARALAARG-ARVVLAVRDPAKGGAAAATmtGDVVVRRLDLADLASVRAFAEG 81
                    9****************5.***********98655533227788888999999999987765 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.3     3e-06     0.006      21      81 ..      12      75 ..       4      92 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3e-06
                   -TTSEEEEE--.SHHHHHHHHHHHHCT-EEEEE-S-HHH..HHHHHCTT-EE--HHHCTTT-SE CS
  AdoHcyase_NAD 21 laGkvavvaGy.GdvGkGcaaslkglGarvivtevdPic..alqaameGfevvtleevvkkadi 81
                   ++G+++vv+G    +G+ +a++l + Garv+++  dP    a  a+m G  vv+  ++++ a++
     KIR66204.1 12 MTGRTVVVTGAnSGIGRTAARALAARGARVVLAVRDPAKggAAAATMTGDVVVRRLDLADLASV 75
                   789******972579**********************854488999*99888877777666665 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.1   8.9e-06     0.018       1      63 [.      17      80 ..      17      93 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.9e-06
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEE.ES-TT-HHHHHHHHT CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelv.kgdlddkeslvealk 63
                ++v+Ga   +G+  +ral+++g +v   vRd+ +  a++    G ++v   dl d +s+++  +
  KIR66204.1 17 VVVTGANSGIGRTAARALAARGARVVLAVRDPAKGGAAAATMTGDVVVrRLDLADLASVRAFAE 80
                689*********************************************999****999887655 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   5.1e-05       0.1       1      67 [.      25      94 ..      25     100 .. 0.75
   2 ?   -1.3   0.0      0.98     2e+03      77      98 ..     125     147 ..     102     160 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.1e-05
                HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTESEEEETTTC.H...HHHHHHHHTTTSSEEEEEESSC CS
  ADH_zinc_N  1 gvGlaavqlAkalGaeviavdsseeklelakk.lGadevinykea.d...lverikeltggegvdvvfecvG 67
                g+G  a  +++a Ga+v+ +++++ k   a+  +  d+v+ + +  d   + +  + lt  e++dv ++ +G
  KIR66204.1 25 GIGRTAARALAARGARVVLAVRDPAKGGAAAAtMTGDVVVRRLDLaDlasVRAFAEGLT--EPIDVLINNAG 94
                89***********************9955555466699999955445111444444444..78898888877 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.98
                 HCEEEEEEEEECSC.TSSEEEEE CS
  ADH_zinc_N  77 kllkpgGrlvvvGg.gkgeeefd 98 
                  l + +Gr+v+v   g+   ++d
  KIR66204.1 125 LLPRIRGRVVTVSStGHRAGTID 147
                 45566788888876544444455 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.0   0.00016      0.31       2      44 ..      17      60 ..      16     117 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00016
  FAD_oxidored  2 vvVvGGgpa.GvaAAiaAaraGakvlLveergvlGGlltsglva 44
                  vvV G++++ G +AA a a +Ga+v+L  +++  GG +++ + +
    KIR66204.1 17 VVVTGANSGiGRTAARALAARGARVVLAVRDPAKGGAAAATMTG 60
                  89*****999***************************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1997.40
//
Query:       KIR66205.1  [L=337]
Description: LacI family transcriptional regulator [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-25   90.4   1.6    2.9e-25   89.5   1.6    1.5  1  Peripla_BP_3    Periplasmic binding protein-like domain
    4.5e-19   68.0   0.2    8.4e-19   67.1   0.2    1.5  1  LacI            Bacterial regulatory proteins, lacI family
    1.5e-15   57.4   0.0    1.9e-15   57.1   0.0    1.1  1  Peripla_BP_1    Periplasmic binding proteins and sugar bindin
    5.5e-05   22.9   0.1    0.00011   21.9   0.1    1.5  1  Peripla_BP_4    Periplasmic binding protein domain
    0.00093   19.2   0.1     0.0019   18.2   0.1    1.5  1  HTH_3           Helix-turn-helix
     0.0013   19.1   0.2     0.0048   17.2   0.2    2.1  1  HTH_31          Helix-turn-helix domain
     0.0022   17.7   0.1     0.0084   15.9   0.1    2.0  1  HTH_38          Helix-turn-helix domain
     0.0041   17.0   0.1       0.04   13.8   0.0    2.8  2  MarR_2          MarR family
  ------ inclusion threshold ------
       0.01   15.6   0.0      0.026   14.3   0.0    1.8  1  HTH_IclR        IclR helix-turn-helix domain
      0.034   13.9   0.1       0.11   12.3   0.1    1.9  1  MerR            MerR family regulatory protein
      0.041   13.7   0.0       0.13   12.1   0.0    1.9  1  HTH_23          Homeodomain-like domain
       0.05   13.5   0.0       0.11   12.4   0.0    1.5  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
      0.083   12.5   0.1       0.23   11.1   0.0    1.8  2  HTH_24          Winged helix-turn-helix DNA-binding
      0.086   12.6   0.0       0.19   11.5   0.0    1.6  1  TetR_N          Bacterial regulatory proteins, tetR family
      0.091   12.8   0.0       0.19   11.8   0.0    1.5  1  HTH_7           Helix-turn-helix domain of resolvase
        0.1   12.5   1.0       0.34   10.8   0.0    2.4  3  HTH_5           Bacterial regulatory protein, arsR family
       0.11   12.6   0.5       0.37   11.0   0.1    2.2  2  HTH_28          Helix-turn-helix domain
       0.12   12.3   0.0       0.34   10.9   0.0    1.7  1  MarR            MarR family


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   1.6   2.9e-28   2.9e-25       1     166 []     168     331 ..     168     331 .. 0.88

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 2.9e-28
                   ..HHHHCS--EEEEEE...--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-S..EEEEESSCCHHHHHHHH CS
  Peripla_BP_3   1 vehLvelGhrriafig...gegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalP..tAviaasDelAlgvlqa 92 
                   v+hL++lGhr++a+++   +  ++g   s++ ++gfr a++e gl   ++ + +d + +++a  ++ll      aa+P  tA+   ++++  gv +a
    KIR66205.1 168 VHHLADLGHRHVALVNrsaELVASGYGPSHRALAGFRAAVAERGLVGVDVCCGDDAA-SGEACVEQLL------AAYPqlTAMATINEAALPGVQRA 257
                   79**************99977888889999***************977776655555.5555555552......2356337**************** PP

                   HCCTT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEE.E--EEE--GGG CS
  Peripla_BP_3  93 lreaglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvl.lppelveReSt 166
                   l+ agl+vP d+sv+g+  ++ a+ +sPplT++++p+ ++G +a+ lll+ ++ ++a+p+++l  pp + +R+St
    KIR66205.1 258 LAGAGLAVPGDFSVTGVAAQHWAEDFSPPLTAADVPMVDMGTEAVALLLEIIAAPDAVPRHRLySPP-VSLRSST 331
                   ***************************************************************7777.*****98 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.2   8.4e-22   8.4e-19       2      46 .]       3      47 ..       2      47 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 8.4e-22
                HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                i ++Ar+AGVS +TVS+vL++k++Vse+tr+r+ a+++el+Y+Pn
  KIR66205.1  3 IGEIARRAGVSRSTVSYVLSGKRTVSEATRQRIQAVIDELDYRPN 47
                789*****************************************9 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   1.9e-18   1.9e-15      20     268 ..      80     318 ..      58     327 .. 0.82

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 1.9e-18
                   HHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EEEE-HHHHHHHHHHHHHH CS
  Peripla_BP_1  20 vkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPcvipddtqageestqkLia 115
                   v+ + +aa++h+ dvll + g++ d   +  + ++ +++dg+++       d++t+ a+ g+p++ +++++ +p+g+  +  d     ++   +L  
    KIR66205.1  80 VASVVEAAARHDLDVLLSPSGGDHDRSfE--RIVAGRRVDGVVLMEIRLADDRVTRLAKVGLPFVTIGRTA-EPHGMSWIDVDYAGLIARCVHHLAD 173
                   677889*********99888877776544..56899*********9998889******************5.55599855566666778******** PP

                   HHHHHTGEEEEEE-T..TS...HHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHHHHHHHHHHTT.--G CS
  Peripla_BP_1 116 eghkrpiallegpes..al...takervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaalGavlalkkeGrlki 207
                    gh+  +al++  +   a+    ++++  Gf+aa+ae Gl    v+v  g +d   ++  +++ll   P++ a+ +in+ a  G  +al ++G l  
    KIR66205.1 174 LGHRH-VALVNRSAElvASgygPSHRALAGFRAAVAERGL--VGVDVCCG-DDAASGEACVEQLLAAYPQLTAMATINEAALPGVQRALAGAG-LAV 265
                   *****.98776554311221124678899***********..55566544.566778889999******************************.999 PP

                   GGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-SEEEE--E CS
  Peripla_BP_1 208 keevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkinkerehprv 268
                   +++      sv ++++   a+d   + +pl+ +++p   +G +a   +l++i +  ++pr 
    KIR66205.1 266 PGDF-----SVTGVAAQHWAED---FSPPLTAADVPMVDMGTEAVALLLEIIAAPDAVPRH 318
                   9999.....8888888855666...79*************************887777775 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   1.1e-07   0.00011     142     218 ..     200     276 ..     183     311 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.1e-07
                   HHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSCCHHHCHHHHHHHTTT..TSTEEEEEES- CS
  Peripla_BP_4 142 iegfrkvlkeypgikivaevaganwdaekaqqalealltanp.ldgilaandgmaegalealeaagl..agkvvvtgqDa 218
                   ++gfr++ +e  g+  v+  +++++da+ +  ++e+ll+a+p l ++ + n ++ +g+ +al+ agl   g++ vtg+ a
    KIR66205.1 200 LAGFRAAVAE-RGLVGVD--VCCGDDAASGEACVEQLLAAYPqLTAMATINEAALPGVQRALAGAGLavPGDFSVTGVAA 276
                   6899999888.5666665..3459*****************66************************8888888999876 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.9e-06    0.0019      14      40 ..       5      31 ..       1      44 [. 0.84

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.9e-06
                HHHHHHTSSHHHHHHHHTTSSCSBHHH CS
       HTH_3 14 eLAeklGvsrstisriEnGernPslet 40
                e+A+++Gvsrst+s   +G+r  s  t
  KIR66205.1  5 EIARRAGVSRSTVSYVLSGKRTVSEAT 31
                89*****************99998776 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   4.8e-06    0.0048      19      48 ..       5      33 ..       2      52 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.8e-06
      HTH_31 19 evAerlgvsestlsrlEqGrrgrpspavle 48
                e A+r+gvs+st+s + +G+r+ +s+a+  
  KIR66205.1  5 EIARRAGVSRSTVSYVLSGKRT-VSEATRQ 33
                89*******************6.9887544 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   8.4e-06    0.0084      21      41 ..       1      21 [.       1      22 [. 0.91

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.4e-06
      HTH_38 21 lslreIArrLgrspsTIsREl 41
                +++ eIArr g+s+sT+s+ l
  KIR66205.1  1 MNIGEIARRAGVSRSTVSYVL 21
                6788**************987 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     4e-05      0.04      23      42 ..       2      21 ..       1      23 [. 0.91
   2 ?   -2.0   0.0       3.4   3.4e+03      10      28 ..     120     135 ..     119     138 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4e-05
                EHHHHHHHHTSSHHHHHHHH CS
      MarR_2 23 tvgelarrlglsksavsril 42
                ++ge+arr g+s+s+vs++l
  KIR66205.1  2 NIGEIARRAGVSRSTVSYVL 21
                689**************987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.4
                 HHHHHHCTTTSEEEHHHHH CS
      MarR_2  10 vLaaLgrrpgrdltvgela 28 
                 vL++++ +++   +v+ la
  KIR66205.1 120 VLMEIRLADD---RVTRLA 135
                 7889988887...666665 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.6e-05     0.026      19      39 ..       1      21 [.       1      23 [. 0.89

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.6e-05
                -BHHHHHHHHTS-HHHHHHHH CS
    HTH_IclR 19 ltlselArrtglpkStvhRlL 39
                +++ e+Arr+g+++Stv+  L
  KIR66205.1  1 MNIGEIARRAGVSRSTVSYVL 21
                7899*************9766 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00011      0.11       1      16 [.       2      17 ..       2      20 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
                EHHHHHHHHTTTHHHH CS
        MerR  1 tIgevAeltGvsprtL 16
                +Ige+A+++Gvs +t+
  KIR66205.1  2 NIGEIARRAGVSRSTV 17
                6**************8 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.13      20      38 ..       3      21 ..       1      23 [. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
      HTH_23 20 vreIAreLgvsrrTvyrwl 38
                + eIAr+ gvsr+Tv+ +l
  KIR66205.1  3 IGEIARRAGVSRSTVSYVL 21
                569************9766 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011      0.11      13      37 ..       5      29 ..       2      39 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
  YdaS_antitoxin 13 aLAealgvsqqaVsqWlkgkkqvpa 37
                    + A++ gvs+++Vs++l+gk++v+ 
      KIR66205.1  5 EIARRAGVSRSTVSYVLSGKRTVSE 29
                    67*******************9875 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00023      0.23      19      37 ..       2      20 ..       1      22 [. 0.88
   2 ?   -2.7   0.0       4.6   4.6e+03      26      41 ..      60      75 ..      59      76 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
      HTH_24 19 sqreLAerlglSpstvnrr 37
                ++ e+A+r g+S+stv++ 
  KIR66205.1  2 NIGEIARRAGVSRSTVSYV 20
                678*************985 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.6
      HTH_24 26 rlglSpstvnrrlkrL 41
                 lgl +++ ++rl  +
  KIR66205.1 60 TLGLVIPPASQRLTDM 75
                5899999999998765 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00019      0.19      19      35 ..       3      19 ..       1      30 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
                HHHHHHHHTSSHHHHHH CS
      TetR_N 19 vreIAkrAGvskgalYr 35
                + eIA+rAGvs++++ +
  KIR66205.1  3 IGEIARRAGVSRSTVSY 19
                679***********976 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00019      0.19      22      38 ..       1      17 [.       1      23 [. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
                --STTTSSSS---SSSS CS
       HTH_7 22 isiskIAkevnisRsTv 38
                + i +IA++ ++sRsTv
  KIR66205.1  1 MNIGEIARRAGVSRSTV 17
                6799************9 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00034      0.34      16      34 ..       1      19 [.       1      22 [. 0.89
   2 ?   -3.4   0.1       9.4   9.4e+03      34      39 ..     169     174 ..     169     175 .. 0.88
   3 ?   -1.4   0.0       2.3   2.3e+03      13      22 ..     225     234 ..     224     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00034
                EEHHHHHHHHTS-HHHHHH CS
       HTH_5 16 lcvcelaeelglsqstvSh 34
                + ++e+a+  g+s+stvS+
  KIR66205.1  1 MNIGEIARRAGVSRSTVSY 19
                6799**************8 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.4
                 HHHHHH CS
       HTH_5  34 hHLkkL 39 
                 hHL+ L
  KIR66205.1 169 HHLADL 174
                 9**988 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.3
                 TSSEEHHHHH CS
       HTH_5  13 egelcvcela 22 
                 +ge+cv +l 
  KIR66205.1 225 SGEACVEQLL 234
                 79*****996 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00037      0.37      14      32 ..       2      20 ..       1      32 [. 0.89
   2 ?   -3.2   0.0       9.6   9.6e+03      14      24 ..      82      92 ..      80      93 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00037
      HTH_28 14 svreaArelgisrrtvyrW 32
                ++ e+Ar+ g+sr+tv+  
  KIR66205.1  2 NIGEIARRAGVSRSTVSYV 20
                799*************655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 9.6
      HTH_28 14 svreaArelgi 24
                sv eaA+++ +
  KIR66205.1 82 SVVEAAARHDL 92
                67788888765 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00034      0.34      18      38 ..       1      21 [.       1      22 [. 0.94

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00034
                EEHHHHHHHHTS-HHHHHHHH CS
        MarR 18 lsvseLakklgvskstvtrvl 38
                +++ e+a++ gvs+stv+ vl
  KIR66205.1  1 MNIGEIARRAGVSRSTVSYVL 21
                7999**************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2574.03
//
Query:       KIR66206.1  [L=570]
Description: glycogen debranching protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-07   28.1   0.0    1.2e-06   27.6   0.0    1.1  1  Trehalase  Trehalase


Domain annotation for each model (and alignments):
>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   6.8e-11   1.2e-06     304     465 ..     374     529 ..     357     538 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 6.8e-11
                 EE-HHHHHHHHHHHHHHHHCCCHCC-CCHHHHHHHHHHHHHHHHHHHCEETTTTEE--EETTTTEE----BGGGGHHHHCT-S-HHH.HHHHHHHCHHH CS
   Trehalase 304 lvpvDLNallyklekdiaefedklgdsetseefeekaekrkkaidkvLWneeagvylDYdlkkkkqtnyesatnlvpLwaglaskeq.aaklvakvlek 401
                 l + DL a+l+   + +a ++++lg  e + +++++a++ ++a+ + LW+ ++  +   d ++ +++ + s   l+p  +g+  +   aa+l+  v ++
  KIR66206.1 374 LQTADLAAFLVSQLRCLADLATELG--EPAGRWSAEADRIRAAMLRDLWDGAR--FTARDPRTGRRRASRSLLDLMPVTLGADLPAPvAAALARGVEAH 468
                 5689*****************9999..7789*******************655..55566667777888888899999999987766144455555555 PP

                 HCCCCCEESCCCC-SBSSS.-SSTTSTTEEEHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH CS
   Trehalase 402 leesgllvaegglgtsllk.sgrQWDyPngWaPlqilaveglerygeeelaerlaerwlktvtka 465
                 l+++gl + +   + s+   +   W  P  WaP ++l+ +gl+r+g++ la+++++r+l  ++k+
  KIR66206.1 469 LTTHGLATEP---PDSADYlADGYWRGPI-WAPSTVLVEDGLRRAGHTALADEVSRRFLALCEKS 529
                 5555555533...23333337788****5.*****************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.20s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4359.28
//
Query:       KIR66207.1  [L=611]
Description: beta-xylosidase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-26   90.5  19.3    7.5e-17   61.8   4.2    3.5  3  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
      1e-15   58.1  13.9    2.5e-15   56.9  11.2    2.5  2  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    0.00075   18.2   0.0     0.0012   17.6   0.0    1.2  1  Glyco_hydro_39   Glycosyl hydrolases family 39
  ------ inclusion threshold ------
      0.083   13.1   0.4       0.24   11.6   0.4    1.8  1  DUF4987          Domain of unknown function
       0.18   11.8   3.1       0.13   12.2   0.8    1.8  2  DUF1859          Domain of unknown function (DUF1859)
       0.47   10.8   2.7         10    6.5   0.1    3.0  3  DPBB_1           Lytic transglycolase


Domain annotation for each model (and alignments):
>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       2.4   7.3e+03      66      75 ..     345     354 ..     287     373 .. 0.53
   2 !   61.8   4.2   2.5e-20   7.5e-17      18      89 .]     466     539 ..     444     539 .. 0.88
   3 !   38.3   1.0   5.4e-13   1.6e-09       2      54 ..     546     608 ..     545     610 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.4
                      ETTTTEEEEE CS
  RicinB_lectin_2  66 nkasgkvLdv 75 
                      + ++g+++ v
       KIR66207.1 345 ASQTGQAVSV 354
                      2222222222 PP

  == domain 2  score: 61.8 bits;  conditional E-value: 2.5e-20
                      ECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESS...EEEEEETTTTEEEEECGCS-STTEEEEEE CS
  RicinB_lectin_2  18 knvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdg...tyrivnkasgkvLdvaggstanGtnvqqw 89 
                      ++++s+++Ld +g +ta+g  +qq++c g+++q+W +++ + g   ty++vn+ sgk+Ldv+g sta+G++v+qw
       KIR66207.1 466 VAQHSQQCLDNTGLGTADGNLQQQYYCEGGDQQLWNFRPVD-GvanTYTVVNQSSGKCLDVSGVSTADGAAVHQW 539
                      678**********************************8888.4478****************99*********** PP

  == domain 3  score: 38.3 bits;  conditional E-value: 5.4e-13
                      CGEEEE...CETTTT..EEEEECTSSSEEEECGCCTBCTTEEEEEE-TT....T-G.GCEEEE CS
  RicinB_lectin_2   2 nQqWtl...gsggdg..yytiknvasgkvLdvaggstanganvqqwtcs....gaa.nqqWrl 54 
                      nQq+tl   ++ g++   y++++++sgk++dv+g sta++a+v+qwtc+    g++ nq+Wr+
       KIR66207.1 546 NQQFTLrkvTYAGNDshDYQLVARHSGKCVDVSGVSTAAQARVHQWTCNpvgqGSPlNQTWRI 608
                      9*****997433332337*******************************99765558****97 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.4     1e+04      22      43 ..     333     355 ..     314     367 .. 0.48
   2 !   56.9  11.2   8.3e-19   2.5e-15       8     120 ..     468     595 ..     462     606 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.4
                     S.TEBEEEEE-TSCCGGGEEEEE CS
  Ricin_B_lectin  22 a.gapvglydChgskgkQlwtlt 43 
                     + +++ + y+   s++ Q  ++t
      KIR66207.1 333 QpKGEWWAYRYYASQTGQAVSVT 355
                     33333333333333222444444 PP

  == domain 2  score: 56.9 bits;  conditional E-value: 8.3e-19
                     TTTGEEEEETTCTTS.TEBEEEEE-TSCCGGGEEEEE.TT...SEEEETT..TTEEEEES..SSSTTSBEEEEETTTTSGGGCEEEETTTTE... CS
  Ricin_B_lectin   8 vasgkCLdvegeska.gapvglydChgskgkQlwtlt.kd...geirska.qselCldvs..staegakvvlakChkgkgnqrWefdkdgtq... 91 
                     ++s++CLd +g  +a g+  ++y C+g+++ Qlw+++  d   +++ +++ +s++Cldvs  sta+ga v++++C+ ++ nq+++++k +     
      KIR66207.1 468 QHSQQCLDNTGLGTAdGNLQQQYYCEGGDQ-QLWNFRpVDgvaNTYTVVNqSSGKCLDVSgvSTADGAAVHQWTCQ-NGLNQQFTLRKVTYAgnd 560
                     479************99999********88.******633333444444478***********************9.555999998875543444 PP

                     .....EEETTTSEEEEESTTSSTTT.BEEEEEE.T CS
  Ricin_B_lectin  92 .....irhkksgkCLdvkgasksne.klilkkcds 120
                          ++ ++sgkC+dv+g s++++ ++++++c++
      KIR66207.1 561 shdyqLVARHSGKCVDVSGVSTAAQaRVHQWTCNP 595
                     556669***************************86 PP

>> Glyco_hydro_39  Glycosyl hydrolases family 39
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.9e-07    0.0012     159     237 ..     172     252 ..     164     264 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.9e-07
  Glyco_hydro_39 159 FevWnePdlkdFdkvattkeylklYkaaaealkkvseelkvGGP...alctgldewieeltnFfteelvrlDfislHkkgad 237
                     +++WneP+   F++     +yl+l+  + + l+   ++  + GP    +  +  ++ +++++F+   +   D +s H  + d
      KIR66207.1 172 WDIWNEPNITIFWNRP-ISQYLELWRRTYQRLRSEFPDQLIVGPscaCVPSTNHAFWNQYLDFVRSTNTVPDIVSWHSLPGD 252
                     68********999976.679*************98887777777433233455677899*****9999555******98766 PP

>> DUF4987  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4     8e-05      0.24      25      90 ..     336     398 ..     331     450 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8e-05
     DUF4987  25 GdytfklsmyeekvsvdvtiepevegesfllkglvggdfdillgYDkasGrLvlnsqsigavssns 90 
                 G++   +  y +++ + v ++  +  +++  k+ +g    +l+g  ++ G+L++n q++ ++s++ 
  KIR66207.1 336 GEW-WAYRYYASQTGQAVSVTASQSYDAYATKA-TG-AAKVLVGGGRTTGNLTVNLQRLDTTSGVV 398
                 554.347778888999999999999999****9.65.59***********************9975 PP

>> DUF1859  Domain of unknown function (DUF1859)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.5   4.6e+03      41      71 ..     356     386 ..     342     393 .. 0.50
   2 ?   12.2   0.8   4.4e-05      0.13       3      53 ..     400     450 ..     398     455 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.5
                 -TTT-----EEEE-TT--S-EEEE--TTS-- CS
     DUF1859  41 vdlklladtqkisGvqtlyidlaefdGdvev 71 
                     ++a + k +G   + +      G+++v
  KIR66207.1 356 ASQSYDAYATKATGAAKVLVGGGRTTGNLTV 386
                 2233444445555555555555555555555 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4.4e-05
                 XX-----------TT--SS--EE--EEESSS-EEE----TTT-----EEEE CS
     DUF1859   3 vnninqstvtpvynGaisgeGpvavrsvieavaGeevkvdlklladtqkis 53 
                 +n++   t    ynG  +++Gpv+v + +  v+ ++v v l +  +t+ ++
  KIR66207.1 400 NNQVRVLTQRIPYNGGGAVQGPVTVSNSVVNVSNNNVAVTLPYGNQTDTYT 450
                 677777777778*************766656************99998765 PP

>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.7   5.2e+03      13      40 ..     468     495 ..     460     500 .. 0.82
   2 ?    6.5   0.1    0.0034        10       4      44 ..     507     548 ..     504     556 .. 0.78
   3 ?    3.0   0.1     0.042   1.2e+02      13      39 ..     569     595 ..     550     603 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.7
                 -TTSSB--TTS-EEE-SSS-TT-EEEET CS
      DPBB_1  13 tacGecyevkcltaahktlplgtycrvl 40 
                 + +++c++ + l +a+  l  + yc  +
  KIR66207.1 468 QHSQQCLDNTGLGTADGNLQQQYYCEGG 495
                 5688999999999999999999999874 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0034
                 EEEEE-CCC.-TTSSB--TTS-EEE-SSS-TT-EEEE.TT--E CS
      DPBB_1   4 gsaslykdg.tacGecyevkcltaahktlplgtycrv.lsgks 44 
                 g a+ y+   +++G+c++v+ +++a+ +  +++ c   l +++
  KIR66207.1 507 GVANTYTVVnQSSGKCLDVSGVSTADGAAVHQWTCQNgL-NQQ 548
                 66777744459************************9843.344 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.042
                 -TTSSB--TTS-EEE-SSS-TT-EEEE CS
      DPBB_1  13 tacGecyevkcltaahktlplgtycrv 39 
                 + +G+c +v+ +++a ++  +++ c +
  KIR66207.1 569 RHSGKCVDVSGVSTAAQARVHQWTCNP 595
                 679***************9******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4352.23
//
Query:       KIR66208.1  [L=467]
Description: hypothetical protein TK50_13545 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-15   54.8   0.0    8.3e-15   54.1   0.0    1.3  1  GerE          Bacterial regulatory proteins, luxR family
    1.8e-06   28.1  18.3     0.0011   19.3   0.7    5.2  5  TPR_12        Tetratricopeptide repeat
     0.0045   16.8   0.1     0.0068   16.1   0.1    1.4  1  MctB          Copper transport outer membrane protein, MctB
     0.0059   17.1   0.5     0.0059   17.1   0.5    8.2  7  TPR_4         Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.021   14.9   9.3      0.081   13.1   0.8    4.0  4  TPR_2         Tetratricopeptide repeat
      0.032   14.0   0.7      0.095   12.5   0.0    2.1  2  HTH_23        Homeodomain-like domain
      0.039   13.6   0.0       0.11   12.1   0.0    1.8  1  Sigma70_r4_2  Sigma-70, region 4
       0.11   12.4   1.1       0.56   10.1   0.0    2.7  3  Sigma70_ECF   ECF sigma factor
       0.11   11.8  16.5       0.01   15.3   8.0    2.8  3  TPR_MalT      MalT-like TPR region
       0.46   10.6   2.4         13    6.1   0.2    3.8  3  TPR_7         Tetratricopeptide repeat
        1.4    8.9   9.4        1.6    8.7   0.9    3.6  3  TPR_10        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   5.1e-18   8.3e-15       3      54 ..     409     460 ..     407     462 .. 0.95

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 5.1e-18
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelv 54 
                 L+  E+ v + +a+G+sn e A++l++S kT+++h++ni++KL+v++r+el+
  KIR66208.1 409 LTGAEARVAAAIADGLSNREAAQRLFVSVKTIEFHLGNIFRKLGVRNRTELA 460
                 78889*********************************************98 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.011        19      22      66 ..      76     117 ..      55     119 .. 0.66
   2 !   19.3   0.7   6.5e-07    0.0011       4      62 ..     174     230 ..     171     231 .. 0.85
   3 ?   -2.0   0.1       2.9   4.7e+03      51      67 ..     258     274 ..     251     278 .. 0.57
   4 ?    0.3   0.0      0.53   8.7e+02      32      49 ..     293     311 ..     290     314 .. 0.81
   5 !   11.8   0.8   0.00013      0.22      40      75 ..     322     357 ..     316     359 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.011
      TPR_12  22 Alellekaleia.rrllGpdhpltattlrnLgrlyralgryeeAle 66 
                   ++l+kal+i+ ++++G+d   ++++  + + +  ++ r++eA++
  KIR66208.1  76 GPDYLDKALRIFdQNAFGDDA-VLVECALTAALT--LM-RPQEARR 117
                 5589********888898775.444444444444..46.7777776 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 6.5e-07
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrly.ralgrye 62 
                  a + la + + +g++deA ++l++a+e+a r+  + ++++a+ l     ++ +a+g+++
  KIR66208.1 174 EATSWLAKCDALRGDLDEAADHLDQARELAARV--G-SAWVARHLPECTVALaFARGDHD 230
                 56667***************************9..4.66899999999888745888887 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.9
      TPR_12  51 LgrlyralgryeeAlel 67 
                 L++ + ++gr+  A  l
  KIR66208.1 258 LATHHALAGRPGLAATL 274
                 45555555555555555 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.53
      TPR_12  32 iarrl.lGpdhpltattlr 49 
                 ++r++ l+pd+p+ta++l 
  KIR66208.1 293 AWRAWiLDPDSPATAAALT 311
                 67777799********996 PP

  == domain 5  score: 11.8 bits;  conditional E-value: 0.00013
      TPR_12  40 dhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 +++l+a++   Lg  + ++gr  eA +lle+a a +
  KIR66208.1 322 ERLLAARVAWLLGAHHGRSGRRGEAARLLEQASAGY 357
                 57899***************************9876 PP

>> MctB  Copper transport outer membrane protein, MctB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   4.2e-06    0.0068      38     128 ..     170     261 ..     149     357 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.2e-06
        MctB  38 egqveelr..eekeelraeadaleaqleaaddfaaavaprlvagrLtgrsVavvttpdadeedvdavtelleqAGAtvtgtvtltdkfvdpde 128
                   q e+ +  ++ ++lr + d++   l++a ++aa+v+ + va +L + +Va+  + + d +   ++ el+ + +A vt+ ++ ++++  +++
  KIR66208.1 170 DVQAEATSwlAKCDALRGDLDEAADHLDQARELAARVGSAWVARHLPECTVALAFA-RGDHDAWVGLLELVVATDAGVTAGLQHEHRWELATH 261
                 44444444447889**************************************9887.78889999**************99999988877665 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.6       7.2   1.2e+04      16      24 ..      13      21 ..      13      21 .. 0.87
   2 ?   -2.6   0.2       8.1   1.3e+04      16      23 ..     111     118 ..     111     119 .. 0.82
   3 !   17.1   0.5   3.6e-06    0.0059       1      26 []     173     198 ..     173     198 .. 0.94
   4 ?    1.1   0.1      0.53   8.6e+02      10      19 ..     222     231 ..     219     231 .. 0.85
   5 !    7.2   4.1    0.0057       9.2       3      25 ..     254     276 ..     252     277 .. 0.92
   6 !    9.6   6.1   0.00097       1.6       1      26 []     327     352 ..     327     352 .. 0.96
   7 ?   -2.7   0.3       9.2   1.5e+04      14      25 ..     454     465 ..     452     466 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7.2
       TPR_4 16 dldeArall 24
                d+d+A++l+
  KIR66208.1 13 DPDRAARLA 21
                8999*9986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8.1
       TPR_4  16 dldeAral 23 
                 ++ eAr+ 
  KIR66208.1 111 RPQEARRF 118
                 789***97 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 3.6e-06
       TPR_4   1 arallaLArallalGdldeAraller 26 
                 a a+++LA   +++GdldeA+++l++
  KIR66208.1 173 AEATSWLAKCDALRGDLDEAADHLDQ 198
                 5799********************97 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.53
       TPR_4  10 allalGdlde 19 
                 +++a+Gd+d+
  KIR66208.1 222 LAFARGDHDA 231
                 789*****96 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.0057
       TPR_4   3 allaLArallalGdldeAralle 25 
                 +++ LA  ++++G++  A++ll+
  KIR66208.1 254 HRWELATHHALAGRPGLAATLLA 276
                 799*****************996 PP

  == domain 6  score: 9.6 bits;  conditional E-value: 0.00097
       TPR_4   1 arallaLArallalGdldeAraller 26 
                 ar++++L+  + + G+  eA++lle+
  KIR66208.1 327 ARVAWLLGAHHGRSGRRGEAARLLEQ 352
                 6899********************98 PP

  == domain 7  score: -2.7 bits;  conditional E-value: 9.2
       TPR_4  14 lGdldeAralle 25 
                 + + + A++ ++
  KIR66208.1 454 RNRTELAARRAR 465
                 567888888887 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         2   3.2e+03      23      33 ..      79      89 ..      78      90 .. 0.71
   2 ?   13.1   0.8     5e-05     0.081       1      31 [.     173     203 ..     173     205 .. 0.91
   3 ?    5.0   0.2     0.019        32       2      27 ..     328     353 ..     327     355 .. 0.89
   4 ?   -2.8   0.0       6.1     1e+04       5      15 ..     442     452 ..     442     452 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2
       TPR_2 23 afekAleldPn 33
                +++kAl++  +
  KIR66208.1 79 YLDKALRIFDQ 89
                78888888765 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 5e-05
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 aea  +l+++ + +gd++eA++++++A el+
  KIR66208.1 173 AEATSWLAKCDALRGDLDEAADHLDQARELA 203
                 567789*********************9996 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.019
       TPR_2   2 ealynlGlayyklgdyeeAleafekA 27 
                 ++ + lG  + ++g+  eA++++e+A
  KIR66208.1 328 RVAWLLGAHHGRSGRRGEAARLLEQA 353
                 5667899******************9 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 6.1
       TPR_2   5 ynlGlayyklg 15 
                 + lG++ +klg
  KIR66208.1 442 FHLGNIFRKLG 452
                 679***99998 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       3.9   6.3e+03       7      22 ..     343     361 ..     342     366 .. 0.52
   2 ?   12.5   0.0   5.9e-05     0.095       8      34 ..     414     440 ..     413     442 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.9
      HTH_23   7 Rlrillllae...Glsvre 22 
                 R ++++ll +   G+ ++ 
  KIR66208.1 343 RGEAARLLEQasaGYARAG 361
                 6666666666555554443 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.9e-05
      HTH_23   8 lrillllaeGlsvreIAreLgvsrrTv 34 
                 +r++ + a+Gls re+A++L vs  T+
  KIR66208.1 414 ARVAAAIADGLSNREAAQRLFVSVKTI 440
                 6899999******************98 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     7e-05      0.11      25      53 ..     422     450 ..     418     451 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7e-05
                   S---HHHHHHHHT--HHHHHHHHHHHHHH CS
  Sigma70_r4_2  25 eglsykEIAellgisegtVksrlsRArkk 53 
                   +gls +E+A++l +s++t++ +l    +k
    KIR66208.1 422 DGLSNREAAQRLFVSVKTIEFHLGNIFRK 450
                   8*********************9766666 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.1   1.8e+03      35      67 ..       3      35 ..       1      38 [. 0.63
   2 ?   -2.0   0.0       1.7   2.8e+03       4      33 ..     346     376 ..     344     379 .. 0.81
   3 ?   10.1   0.0   0.00034      0.56     143     172 ..     415     444 ..     409     456 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.1
  Sigma70_ECF 35 gsklknerreetledtaLvfeaflrlvdkekfp 67
                 ++ l      +   +  L+f af++l ++ +++
   KIR66208.1  3 ERLLSAADSADPDRAARLAFRAFVALSRTADSH 35
                 555555555555566678899999888877765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.7
  Sigma70_ECF   4 vtelleqvkdGdaea.aeqllelvydeLrrl 33 
                   ++lleq   G a a a+ ll lv ++Lr l
   KIR66208.1 346 AARLLEQASAGYARAgAAGLLALVLKDLRLL 376
                  6899*******99884678999999999966 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00034
  Sigma70_ECF 143 lvelrkleGlsveEiAeklgvskrtverrl 172
                   v+ +  +Gls+ E+A++l vs +t+e +l
   KIR66208.1 415 RVAAAIADGLSNREAAQRLFVSVKTIEFHL 444
                  5888999*******************9665 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.14   2.2e+02     163     220 ..      59     117 ..      35     133 .. 0.71
   2 ?   15.3   8.0   6.2e-06      0.01     144     264 ..     155     276 ..     123     282 .. 0.81
   3 ?   -1.5   0.2      0.78   1.3e+03      87     106 ..     334     353 ..     295     364 .. 0.49

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.14
    TPR_MalT 163 ayvllarialaqGdleeAetllekaeelaresnf..hvdwlanaeevrvrlwlaqgdlaa 220
                 +y +la  a+ +  l +  ++l+ka +  +++ f  +   +++a  + ++l+   ++ ++
  KIR66208.1  59 IYCTLAGTAATRAGLADGPDYLDKALRIFDQNAFgdDAVLVECALTAALTLM-RPQEARR 117
                 789999999999999999999****999999999322333455555555433.3334444 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 6.2e-06
    TPR_MalT 144 hlqeGielleql.epeaaldayvllarialaqGdleeAetllekaeelaresnfhvdwla.naeevrvrlwlaqgdlaaaerwleaaelpsdddnhfle 240
                  l+e+++l+    + +++++a+  la+  + +Gdl+eA++ l++a ela++  +  +w+a  + e+ v+l  a+gd +a + +le     + +++  l+
  KIR66208.1 155 ELREAVRLAALCdSLDVQAEATSWLAKCDALRGDLDEAADHLDQARELAAR--VGSAWVArHLPECTVALAFARGDHDAWVGLLELVVATDAGVTAGLQ 251
                 456666666666455999*******************************95..55577643789*******************9999888888887777 PP

    TPR_MalT 241 lelrn.larvllalgrydeAlelle 264
                  e+r  la  + ++gr   A +ll+
  KIR66208.1 252 HEHRWeLATHHALAGRPGLAATLLA 276
                 7776657777777787777777776 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.78
    TPR_MalT  87 aeilvaqGrLheAletyeqa 106
                 +  +   Gr  eA+++ eqa
  KIR66208.1 334 GAHHGRSGRRGEAARLLEQA 353
                 22222233333333333333 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.41   6.7e+02      12      25 ..     186     199 ..     181     215 .. 0.84
   2 ?    6.1   0.2    0.0081        13       5      25 ..     333     353 ..     331     372 .. 0.86
   3 ?   -0.4   0.0      0.92   1.5e+03       4      13 ..     443     452 ..     442     462 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.41
       TPR_7  12 lGdyeeAielyeqs 25 
                 +Gd +eA++++ q+
  KIR66208.1 186 RGDLDEAADHLDQA 199
                 69*******99993 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0081
       TPR_7   5 LarlysrlGdyeeAielyeqs 25 
                 L+  + r G++ eA++l+eq+
  KIR66208.1 333 LGAHHGRSGRRGEAARLLEQA 353
                 888899**************4 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.92
       TPR_7   4 nLarlysrlG 13 
                  L++++++lG
  KIR66208.1 443 HLGNIFRKLG 452
                 69******77 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       5.5   8.9e+03      13      24 ..     151     162 ..     147     164 .. 0.66
   2 ?    3.9   0.2     0.032        52      15      35 ..     186     206 ..     183     208 .. 0.88
   3 ?    8.7   0.9     0.001       1.6       8      34 ..     333     359 ..     332     361 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.5
      TPR_10  13 rqrgrydeAeal 24 
                 r + ++ eA++l
  KIR66208.1 151 RGQAELREAVRL 162
                 556677788877 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.032
      TPR_10  15 rgrydeAealleealairrrl 35 
                 rg++deA ++l++a ++  r+
  KIR66208.1 186 RGDLDEAADHLDQARELAARV 206
                 8*************9987665 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.001
      TPR_10   8 LanalrqrgrydeAealleealairrr 34 
                 L++ + + gr+ eA +lle+a a + r
  KIR66208.1 333 LGAHHGRSGRRGEAARLLEQASAGYAR 359
                 7888999**************888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.20s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3238.39
//
Query:       KIR66209.1  [L=337]
Description: hypothetical protein TK50_13550 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00043   19.9   0.0    0.00078   19.1   0.0    1.5  1  RimK      RimK-like ATP-grasp domain


Domain annotation for each model (and alignments):
>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.4e-08   0.00078      80     186 ..     210     324 ..     134     326 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.4e-08
                 EE--SS-S...EEEEEEEETTEEEEE.EEEE--S...SS----TTTT-EEEE----HHHHHHHHHHHHHCT-SEEEEEEEEETTE.EEEEEEESS--SH CS
        RimK  80 eyieeaen...ediRvlvvddevvaa.lrrvske...GdFRsnlhrGgvaeklqlseeekelAikaakamelvvaGvDllrakrg.llvlEvnsspgle 170
                  +i++a      ++Rv vv+d v +a +  +  +    d+R    r +  ++++l  +     +  ++a++l +  +Dl+ + +g ++ +E+n s +  
  KIR66209.1 210 PFIAQARVpkqVELRVTVVGDRVFTAaIDSQRSNharHDWRRQDGRNTPLSPYDLPADVAARCVALTRALGLCYGALDLIVTPDGrYVYIEINPSGQYL 308
                 56666654444899*********865154442221113777777778888999**9999999999*************777766616669********* PP

                 HHHHHHT--HHHHHHH CS
        RimK 171 kiektlgidiakklie 186
                  +e ++g+ i + +++
  KIR66209.1 309 WVEEETGLPITAAVVD 324
                 *******999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2586.94
//
Query:       KIR66210.1  [L=330]
Description: hypothetical protein TK50_13555 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.01   15.6   0.0      0.016   15.0   0.0    1.3  1  SurA_N_3        SurA N-terminal domain
       0.11   12.6   1.8        0.2   11.7   1.8    1.4  1  Haem_degrading  Haem-degrading


Domain annotation for each model (and alignments):
>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.7e-06     0.016      84     161 ..     119     194 ..     107     195 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-06
    SurA_N_3  84 rqqvldqlidealllqeakklglsvsdeevakeiasipaFqedGkFdkerYkqlLaangltpeefeaslredlllqkl 161
                 + +vl +l+d  +l++e + + ++v+d e++++  +++  +++G +d++   + La++gl++++f++ +++ +++ +l
  KIR66210.1 119 DHDVLARLVDTGVLAAELELHPVEVTDGELQAAADAYR--RAKGLLDPASTARWLAERGLSAADFADLVAHTVAVARL 194
                 6789***************************9987776..599**************************999998876 PP

>> Haem_degrading  Haem-degrading
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.8   2.3e-05       0.2       9     113 ..     190     294 ..     183     295 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.3e-05
  Haem_degrading   9 lgaaarakarekgkpvviai.vdaggqllffarmdgaspdnedwaerKantaarfgkstaalgeklkeedyagrv.ilgGGvpirvkggvvGaig 101
                     ++a++r+++ +++ p+ +a    + + l++  + d a p+  + a +    a+r g+    l+  +++   a++v +  G vp +v g++v a++
      KIR66210.1 190 AVARLRERVVADRLPAWFARhRSDFDTLVVAWAADAALPAEPEAALAAVAGAVRAGRAAGVLRTVATA--AAPEVrAACGPVPTVVAGTPVTAVV 282
                     56778888888899988888444556788888888***************************999883..448899******************* PP

  Haem_degrading 102 vSGlkqeeDhqv 113
                     v   ++e D +v
      KIR66210.1 283 VAREPAELDDAV 294
                     *99999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2230.58
//
Query:       KIR66211.1  [L=285]
Description: hypothetical protein TK50_13565 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-26   91.0   0.0    1.3e-25   90.2   0.0    1.4  1  DUF4132   Domain of unknown function (DUF4132)


Domain annotation for each model (and alignments):
>> DUF4132  Domain of unknown function (DUF4132)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.0   7.3e-30   1.3e-25       1     174 [.      30     201 ..      30     206 .. 0.87

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 7.3e-30
     DUF4132   1 GKrlksvPaklkkddavakelkelkkelkeqasrqrarLeeamvsg.........rvwtaeewqelllehpvlgdlvrrLvwkvyeegeallrafr.ed 89 
                 G++lk++P++l++d++v ++l++l+++l+++a+++ ar++++ vs+         rvw++ +w+++l++++vlgd  ++  +          +++   d
  KIR66211.1  30 GRPLKTLPKALRDDPEV-DRLRQLAQWLDRHAAECLARVDAWVVSSlpvptallaRVWPDPAWRDALRDLVVLGDDPAAPGFL--------RDVTDgGD 119
                 99***************.***********************************************999999996533322222........22222457 PP

     DUF4132  90 gslvdlddeevelkedakvrlaHPveleaeelaawqelladyeivQpfkQlfRevyvlteeerete..eserfaghqiqpkkllall 174
                  ++vdld+e+v+l++  + rl+HP++l   +la+++e++ +  i+Q+++Ql+R ++  +++ ++++   +++f+g +++ + ++ ++
  KIR66211.1 120 LRMVDLDGETVRLSPS-TARLPHPAHL--PALADLREFADELDITQRVEQLHRGTWS-RPATLTDRdtTVTDFRGTKVPNRLAV-RA 201
                 88*************9.99********..79**************************.77777777799*********998777.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2203.86
//
Query:       KIR66212.1  [L=622]
Description: SWIM zinc finger domain protein [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-05   22.9   1.9    4.8e-05   22.9   1.9    1.8  2  SWIM      SWIM zinc finger


Domain annotation for each model (and alignments):
>> SWIM  SWIM zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   1.9   2.7e-09   4.8e-05       9      39 ..      56      94 ..      48      95 .. 0.79
   2 ?   -3.8   0.1       0.6   1.1e+04      29      33 ..     296     300 ..     295     301 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.7e-09
        SWIM  9 r............vrlnkatCsCpefqkngipCkHalAvllal 39
                +            ++ ++a+CsC       + C+H++Avl a+
  KIR66212.1 56 AlvvlrpgptgavTGPEQARCSCL----LAPRCLHLAAVLAAC 94
                55555555578888999*******....************998 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.6
        SWIM  29 CkHal 33 
                 C Ha+
  KIR66212.1 296 CAHAV 300
                 ***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 4456.73
//
Query:       KIR66213.1  [L=244]
Description: 3-ketoacyl-ACP reductase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-55  188.5   9.7    1.6e-55  188.2   9.7    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    5.6e-46  156.5   5.0    6.6e-46  156.2   5.0    1.1  1  adh_short     short chain dehydrogenase
    3.7e-20   72.6   2.5    5.1e-20   72.1   2.5    1.1  1  KR            KR domain
    0.00025   20.6   2.9    0.00068   19.2   2.9    1.7  1  Epimerase     NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.018   16.0   6.6      0.025   15.6   4.4    2.1  2  LytR_C        LytR cell envelope-related transcriptional atte


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.2   9.7   4.4e-59   1.6e-55       3     233 ..      14     243 ..      10     244 .] 0.96

  Alignments for each domain:
  == domain 1  score: 188.2 bits;  conditional E-value: 4.4e-59
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                    +gIGr++A++la+ G  vv+  +  +   ++ v+++++++g++v +++DV+de +v++l++ +++++g++D++v++ag+a +  +p++e++ +e+d
    KIR66213.1  14 SQGIGRQVAQRLAADGFAVVVNFATGKVaaEQVVAAIVAAGGEAVaVPADVADEVAVAELFDVAERTYGGIDVVVHSAGVASH--APVTELDLAELD 108
                   59*******************9998888778899999999999966*************************************..************ PP

                   HHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHH CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleele 193
                   r++ vn++++f + ++a++ +++gg++vn+ss+  + ++p+y+ay+ +Kaa+ a+t  lA+el  + ++vNav+pg++ T++  + k  ++ +++++
    KIR66213.1 109 RVHRVNVRGTFVVDQQAARRIRPGGALVNISSTTPRLSMPGYAAYASSKAAVDAITLILARELRGRDVTVNAVAPGATGTDLFLAGK-DEQTIAAMA 204
                   **********************************************************************************77665.68889999* PP

                   HHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 194 araplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   a++p+grlg+p + ae+++fLa +  ++i+Gq+++v+gG 
    KIR66213.1 205 AMSPMGRLGDPADTAEVVAFLAGPG-RWINGQVVYVNGGA 243
                   ***********************98.*************5 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.2   5.0   1.9e-49   6.6e-46       2     187 ..       7     191 ..       6     199 .. 0.97

  Alignments for each domain:
  == domain 1  score: 156.2 bits;  conditional E-value: 1.9e-49
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 v++vtG+s+GIGr++a++la++G+ vvv ++  + ++e+v++ + ++g +a+a+++Dv+d+ +v +l++ a+  +g++dv+v+ AG++  +p+ el+ +
  KIR66213.1   7 VAIVTGGSQGIGRQVAQRLAADGFAVVVnFATGKVAAEQVVAAIVAAGGEAVAVPADVADEVAVAELFDVAERTYGGIDVVVHSAGVASHAPVTELDLA 105
                 89************************************************************************************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 e +rv  vN+ g+f + +++++  + + +G+ vn+sS++ + +++g+aaY++sKaav+++t  la+el+ + ++vnavaPG++ Td+ 
  KIR66213.1 106 ELDRVHRVNVRGTFVVDQQAARR-I-RPGGALVNISSTTPRLSMPGYAAYASSKAAVDAITLILARELRGRDVTVNAVAPGATGTDLF 191
                 ***********************.4.7**********************************************************986 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   2.5   1.4e-23   5.1e-20       4     160 ..       9     164 ..       7     184 .. 0.91

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 1.4e-23
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 ++tGG  g+G+++a+ la++g + +v ++     + ++++ +a++ a g e  +v+aDv+d+ av++l++ ++++ + i  v+h+Agv+  ++++e++ 
  KIR66213.1   9 IVTGGSQGIGRQVAQRLAADGFAVVVNFATG---KVAAEQVVAAIVAAGGEAVAVPADVADEVAVAELFDVAERTYGGIDVVVHSAGVASHAPVTELDL 104
                 8********************9999988887...4566679********************************************************** PP

                 HHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHH CS
          KR 103 edleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanYaaaNaflDala 160
                 ++l++v +  v+G+ ++++  ++  ++   +v +SS    l ++g a+Ya+  a +Da+ 
  KIR66213.1 105 AELDRVHRVNVRGTFVVDQQAARriRPGGALVNISSTTPRLSMPGYAAYASSKAAVDAIT 164
                 ******************99988899*******************************975 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   2.9   1.9e-07   0.00068       2     116 ..       9     141 ..       8     182 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.9e-07
                 EEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHH....HH.T-SEEEE--S.---HHHHHHSHHH. CS
   Epimerase   2 lVtGatGfiGsalvkallekgye.vigldrlssasntarledl......elveldltdrsalerlfk....ee.qpdavihlAa.vggvaassedpad. 86 
                 +VtG++  iG++++++l++ g   v++++  + a ++   + +        v +d+ d++a+++lf+    ++ ++d+v+h A+  ++ +++  d a+ 
  KIR66213.1   9 IVTGGSQGIGRQVAQRLAADGFAvVVNFATGKVAAEQVVAAIVaaggeaVAVPADVADEVAVAELFDvaerTYgGIDVVVHSAGvASHAPVTELDLAEl 107
                 8********************66588888886666555555449***99999*************98333223579********999999987766542 PP

                 ..HHHHHTHHHHHHHHHHHHH.TCT.EEEEEEEG CS
   Epimerase  87 ..fieknlqgtlnlleaarka.gvk.rllflsSs 116
                   + + n++gt  + + a ++  +   l+++sS+
  KIR66213.1 108 drVHRVNVRGTFVVDQQAARRiRPGgALVNISST 141
                 2268899999999977666554333488888885 PP

>> LytR_C  LytR cell envelope-related transcriptional attenuator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   4.4     7e-06     0.025      11      81 ..      13      88 ..       6      91 .. 0.62
   2 ?    0.1   0.0      0.47   1.7e+03      19      34 ..     167     182 ..     140     230 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7e-06
      LytR_C 11 gvsGlAarvadaLeerGftvgevgnagnadeettivy.....reaaa........aaak..alaaalglgelqedsvkdasvtvvl 81
                g +G+ ++va+ L++ Gf+v+   ++g+  +  ++v+     +  ++        a  +  a+a+++ ++e     ++  +++vv+
  KIR66213.1 13 GSQGIGRQVAQRLAADGFAVVVNFATGKVAA-EQVVAaivaaG--GEavavpadvA--DevAVAELFDVAE-----RTYGGIDVVV 88
                679***************8887556666644.44443344232..22333443222..1346666666666.....5555588887 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.47
      LytR_C  19 vadaLeerGftvgevg 34 
                 +a++L++r  tv +v+
  KIR66213.1 167 LARELRGRDVTVNAVA 182
                 4556666665555533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1775.90
//
Query:       KIR66214.1  [L=212]
Description: hypothetical protein TK50_13595 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-28   99.8   0.0    1.9e-28   99.0   0.0    1.4  1  TetR_C_24  Tetracyclin repressor-like, C-terminal domain
    3.5e-19   68.3   1.3    6.5e-19   67.5   0.2    2.1  3  TetR_N     Bacterial regulatory proteins, tetR family
    0.00064   19.8   0.0     0.0015   18.6   0.0    1.6  2  TetR_C_29  Tetracyclin repressor-like, C-terminal domain
     0.0011   19.3   1.1      0.019   15.3   0.1    2.5  2  TetR_C_11  Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
      0.033   14.2   0.0       0.09   12.8   0.0    1.8  1  TetR_C_7   AefR-like transcriptional repressor, C-terminal do
      0.084   12.9   0.0        8.7    6.5   0.0    2.7  2  HTH_20     Helix-turn-helix domain
       0.12   12.8   0.0        2.7    8.5   0.0    2.4  2  HTH_40     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.0   7.2e-32   1.9e-28       2     114 .]      97     210 ..      96     210 .. 0.98

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 7.2e-32
                 SSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB.-SS-HHHHHHHHHHHHHCHHHC--TTSSS-H CS
   TetR_C_24   2 gspaerLralvrahveviaeereeaavllrelraLspehreeiralrreyerllrdlieeGvaagef.edldpklaalailgmlnwvyrWyrpdGplsp 99 
                 ++p+ r ++l+r  +  +ae+r++++++++e+r+L+++  +e++++r  +e+ ++ +i++Gva+g f +d+dp++a++ ++gm+ w y+W + +Gpls 
  KIR66214.1  97 DDPKVRVAELIRFSLTSVAEYRAHVTIFYQERRNLTADLFAEVTRKRGLVESAFAGMIADGVARGAFrSDVDPRIATFGLVGMCAWAYQWLNVGGPLSV 195
                 6788899******************************************************************************************** PP

                 HHHHHHHHHHHHH-S CS
   TetR_C_24 100 eeiadqyadlllrgl 114
                 +e+a+q+  ++l+gl
  KIR66214.1 196 DEVARQFSAMVLEGL 210
                 ************996 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.2   2.6e-22   6.5e-19       1      46 [.      31      76 ..      31      77 .. 0.96
   2 ?   -3.8   0.0       4.5   1.1e+04      16      24 ..      83      91 ..      81      92 .. 0.70
   3 ?   -3.6   0.0       3.9     1e+04      17      24 ..     193     200 ..     192     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 2.6e-22
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLlea 46
                +++ A+elf++rG+d+t+v+eIA+rA+++kga+Y++F sK++Ll+ 
  KIR66214.1 31 LIASALELFEKRGFDRTSVQEIADRAKLTKGAFYHHFESKDDLLRH 76
                6899***************************************986 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.5
                T--HHHHHH CS
      TetR_N 16 attvreIAk 24
                ++++++IAk
  KIR66214.1 83 EAQLAAIAK 91
                567788887 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.9
                 --HHHHHH CS
      TetR_N  17 ttvreIAk 24 
                 ++v+e+A+
  KIR66214.1 193 LSVDEVAR 200
                 68999998 PP

>> TetR_C_29  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.4   6.1e+03      12      30 ..      63      81 ..      57      87 .. 0.70
   2 !   18.6   0.0   5.9e-07    0.0015       1      85 [.      99     181 ..      99     189 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.4
                HHHHHHH-HHHHHHHHHHH CS
   TetR_C_29 12 tfdyhaanpefvrLvsiEn 30
                ++++++++ +++r +++E 
  KIR66214.1 63 FYHHFESKDDLLRHIQEEY 81
                5677777777777776665 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 5.9e-07
                 HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHS-TT--TTS--SS-.THHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHHHHH CS
   TetR_C_29   1 PvealrrlveftfdyhaanpefvrLvsiEnlhrgrhlkksesirelnspliekleeilerGqaagvFrpgvdaldlyllisslcf 85 
                 P+  +++l++f  +  a+  + v++  +E  +   +l    ++++    + ++++ +++ G+a+g+Fr++vd++   +  +++c 
  KIR66214.1  99 PKVRVAELIRFSLTSVAEYRAHVTIFYQERRNLTADL--FAEVTRKRGLVESAFAGMIADGVARGAFRSDVDPRIATFGLVGMCA 181
                 7888999**********************88888888..66666668899999********************998888888886 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.084   2.1e+02      29      63 ..      58      92 ..      44      98 .. 0.79
   2 !   15.3   0.1   7.2e-06     0.019      57     107 ..     147     199 ..     111     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.084
   TetR_C_11 29 allrallaeaqrdpelaealrerlleprraalrav 63
                 +  a+ ++ +++++l + ++e++le + aa++++
  KIR66214.1 58 LTKGAFYHHFESKDDLLRHIQEEYLEAQLAAIAKI 92
                5555677888889999************9999876 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 7.2e-06
   TetR_C_11  57 raalravlrrAvarGelradadvelvldlllgpll..yrllltgeplddafae 107
                  +a++ +++ +varG  r d+d++++   l+g+    y++l  g+pl+ + ++
  KIR66214.1 147 ESAFAGMIADGVARGAFRSDVDPRIATFGLVGMCAwaYQWLNVGGPLSVDEVA 199
                 68999********************9999998865459999999999877766 PP

>> TetR_C_7  AefR-like transcriptional repressor, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.5e-05      0.09      43      90 ..     142     189 ..     121     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.5e-05
                 T.T----HHHHHHHHHHHHTTSB-SS.-HHHHHHHHHHHHHHHHTHHHH CS
    TetR_C_7  43 agpgrveealaayLeaavaaGrLrid.DpelAAeqflgllkgelfwprl 90 
                 +  g ve+a+a ++++ va+G+ r d Dp +A   ++g++   ++w  +
  KIR66214.1 142 K-RGLVESAFAGMIADGVARGAFRSDvDPRIATFGLVGMCAWAYQWLNV 189
                 3.577899*************************************9765 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0034       8.7      25      46 ..      47      68 ..      34      69 .. 0.91
   2 ?    3.3   0.0     0.033        85      16      34 ..     184     202 ..     184     207 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0034
                B-HHHHHHHHTS-HHHHHHHHH CS
      HTH_20 25 ltaselaerldlskntlsyHLr 46
                 ++ e+a+r  l+k   ++H++
  KIR66214.1 47 TSVQEIADRAKLTKGAFYHHFE 68
                6999****************86 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.033
                 HHHHSTCTTB-HHHHHHHH CS
      HTH_20  16 lraLaraegltaselaerl 34 
                 +++L+ +++l++ e+a+++
  KIR66214.1 184 YQWLNVGGPLSVDEVARQF 202
                 699*************997 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0     0.001       2.7      13      62 ..      47      90 ..      34     119 .. 0.73
   2 ?    1.7   0.0      0.14   3.6e+02      16      41 ..     137     162 ..     133     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.001
      HTH_40 13 lsieeIAkerglkesTIegHLaelieegeeidlerlvseeeekeIeeaie 62
                 s++eIA++ +l+++  + H+ +  ++    dl r ++ee  ++  +ai+
  KIR66214.1 47 TSVQEIADRAKLTKGAFYHHFES--KD----DLLRHIQEEYLEAQLAAIA 90
                599*****************976..22....3444444444444444444 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.14
      HTH_40  16 eeIAkerglkesTIegHLaelieege 41 
                 +e+ ++rgl es  +g +a+ +  g 
  KIR66214.1 137 AEVTRKRGLVESAFAGMIADGVARGA 162
                 7999************9999998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1590.78
//
Query:       KIR66215.1  [L=383]
Description: acyl-CoA dehydrogenase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-48  164.5   8.5    3.1e-48  163.8   8.5    1.3  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    2.8e-29  101.2   0.0    5.2e-29  100.3   0.0    1.5  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
      3e-29  102.0   0.2    6.3e-29  100.9   0.2    1.6  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    5.5e-25   88.2   6.6    5.5e-25   88.2   6.6    2.2  2  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.8   8.5   6.9e-52   3.1e-48       1     150 []     231     381 ..     231     381 .. 0.99

  Alignments for each domain:
  == domain 1  score: 163.8 bits;  conditional E-value: 6.9e-52
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------.HHHHHHHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd.raeasmaKlfa 95 
                    g Gf+ am+tl+h+R+++aa+alg+a+ al++al+y+r+r++fg++++d+q v+++la+m   leaar l+y+aa + ++g+ d +   ++aK fa
     KIR66215.1 231 GTGFATAMRTLDHTRVTIAAQALGIAQGALDHALAYVRQRRQFGRAVADFQGVQFMLADMGMSLEAARQLTYAAAGRSERGEADlTYFGAAAKCFA 326
                    67********************************************************************************************** PP

                    HHHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHHH. CS
  Acyl-CoA_dh_1  96 selaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarrll 150
                    s++a++v+++a+qllGg+Gy+++ p+er++rda++++i+eGt+++qr ++ar+ll
     KIR66215.1 327 SDVAMRVTTDAVQLLGGYGYTRDFPLERMMRDAKITQIYEGTNQVQRIVMARHLL 381
                    ****************************************************985 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.0   1.2e-32   5.2e-29       1      97 []     124     219 ..     124     219 .. 0.95

  Alignments for each domain:
  == domain 1  score: 100.3 bits;  conditional E-value: 1.2e-32
                    EEE---SS-SS-GGG---EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE. CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvkttaaerdggeyvlnGeKiwitnaaiatlalvlartekpdrarglslflvprdapgvsvrrieeklGlrglptgelvfed 96 
                    +++l+Ep+aGsd+as++t  aerdg+ +vlnG K+witna+ +++++v+a t+ ++r+rg+s f+v+r +pg+s++  e+klG++g pt e++f+d
     KIR66215.1 124 SYCLSEPEAGSDAASMRT-RAERDGDTWVLNGVKRWITNAGLSEFYTVFAVTDPTARSRGISAFVVERTDPGISFGAPERKLGIKGSPTREVYFDD 218
                    589***************.89999999************************544449**************************************9 PP

                    . CS
  Acyl-CoA_dh_M  97 v 97 
                    +
     KIR66215.1 219 C 219
                    7 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.2   1.4e-32   6.3e-29       2     113 .]      10     120 ..       9     120 .. 0.96

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 1.4e-32
                    HHHHHHHHHHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHHS CS
  Acyl-CoA_dh_N   2 eeqealrdtvrefaeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailrfG 97 
                    ee+ ++r++vr++++ ++aphaae+de+g+fp++ +++l ++++ + +vp eygGag+d+l++aiv+ee+ara+a  +l + +++ l++ ++l  +
     KIR66215.1  10 EEHAEVRAAVRAVCDAKVAPHAAEADETGQFPQSSYDALRAADFHAPHVPAEYGGAGADALATAIVIEEVARACACSSL-VPAGNKLGTMPLLLAA 104
                    9**************************************************************************9766.6678999999****** PP

                    -HHHHHHHHHHHHTTS CS
  Acyl-CoA_dh_N  98 teeqkrryLpklasge 113
                     e+ k+ryLp++a+ge
     KIR66215.1 105 DEQLKQRYLPPVARGE 120
                    ***************8 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.9      0.63   2.8e+03      48     111 ..      12      71 ..       5      86 .. 0.51
   2 !   88.2   6.6   1.2e-28   5.5e-25       2     133 ..     247     369 ..     246     370 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.63
                    HHHHHHH.HHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGB CS
  Acyl-CoA_dh_2  48 aarldAA.ralleraaaraealaaagkevtvedraearraaalavelaiaavdalfeaaGgsalr 111
                     a+++AA ra+  +++a + a a++  ++      +++ +a++a++  + +v a +  aG++al+
     KIR66215.1  12 HAEVRAAvRAVCDAKVAPHAAEADETGQF-----PQSSYDALRAADFHAPHVPAEYGGAGADALA 71 
                    55555553444444555544444444443.....4444455555555555555555555555554 PP

  == domain 2  score: 88.2 bits;  conditional E-value: 1.2e-28
                    HHHHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   2 giaavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaa 97 
                    +iaa+alG+A++al+++++++r+r +  +g+++ad++ +q+ la++ ++l+AAr+l+++aa r    +++g++   +++  +++a+ +a++ a ++
     KIR66215.1 247 TIAAQALGIAQGALDHALAYVRQRRQ--FGRAVADFQGVQFMLADMGMSLEAARQLTYAAAGR----SERGEA---DLTYFGAAAKCFASDVAMRV 333
                    79************************..***********************************....888888...788899************** PP

                    HHHHHHHCGGGGGBTT-HHHHHHHHHHHHCTSGGG- CS
  Acyl-CoA_dh_2  98 vdalfeaaGgsalrkesplqRlwRDahaaaaHaaln 133
                    + +++++ Gg++++ + pl+R++RDa+++++++++n
     KIR66215.1 334 TTDAVQLLGGYGYTRDFPLERMMRDAKITQIYEGTN 369
                    *********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2822.86
//
Query:       KIR66216.1  [L=322]
Description: hypothetical protein TK50_13605 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-12   47.3  10.2    1.4e-06   28.9   4.4    3.9  2  SnoaL_2   SnoaL-like domain
    3.3e-06   27.4   1.9      0.044   14.2   1.5    3.4  3  DUF4440   Domain of unknown function (DUF4440)
    3.3e-05   23.9   0.2     0.0057   16.8   0.0    2.2  2  WI12      Wound-induced protein WI12


Domain annotation for each model (and alignments):
>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.3   8.5e-07    0.0051       3      99 ..       2     121 ..       1     124 [. 0.73
   2 !   28.9   4.4   2.3e-10   1.4e-06       3      97 ..     171     290 ..     169     297 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.5e-07
                 HHHHHHHTTCHHHHHHTEEEEEEEE...ETTSE..................EESHHHHHH...HHHHHHH..HEEEEEEEEEEEEEETTEEEEEEEEEE CS
     SnoaL_2   3 aflaalnagdldalaalfapdvvwe...dpgge..................lrGreaira...ffralfa..afpdlrfeihdvvadgdrvavewtvtg 75 
                 +f+ al++g l +la+l+a  ++w+   +   +                  l+G  ++ +    +r+l       ++r   ++vva +d+ ++e++ +g
  KIR66216.1   2 DFISALDRGSLGGLARLCATGATWWvdtG---PdrrggdpqlsphgsgrfpLHGVMRMDDklaLMRRLGPtaFPTGCRQIPRRVVAGDDTCVIEVEGHG 97 
                 6999********************95551...3333344555556566677666666666554666666674555666668888999999999****99 PP

                 EEETTSSEEEEEEEEEEEEE.TTEE CS
     SnoaL_2  76 tipatgrgvtvrgvdvfrvr.dGki 99 
                  + a+g ++ +r+  vf+v+  G +
  KIR66216.1  98 -VHASGVEYANRYGFVFDVDpTGAV 121
                 .****************99524655 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 2.3e-10
                 HHHHHHHTTCHHHHHHTEEEEEEEE..................ETTSE..........EESHHHHHHHHHHHHHHEEEEEEEEEEEEEETTEEEEEEEE CS
     SnoaL_2   3 aflaalnagdldalaalfapdvvwe..................dpgge..........lrGreairaffralfaafpdlrfeihdvvadgdrvavewtv 73 
                 a++ al++gdld++  lf+ d++w+                  +   +          ++  +a+ra ++a   ++  ++++ ++++ad+  vave   
  KIR66216.1 171 AMWPALARGDLDTFGGLFTGDATWWtdtgrdrrlgrphrrgdiH---AngpfhgtvtlTEKLAAMRARLAAGGYRSAAVTVTPRRWIADDTLVAVEAVG 266
                 67889*******************96666666666555555542...0555333455555555666666666559*********************999 PP

                 EEEEETTSSEEEEEEEEEEEE.ETT CS
     SnoaL_2  74 tgtipatgrgvtvrgvdvfrv.rdG 97 
                 ++ + a+g+++++r+  + +v +dG
  KIR66216.1 267 DA-VLADGARYQNRYLWIVDVrADG 290
                 88.9*****************4455 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0003       1.8      10      74 ..       5      73 ..       2      90 .. 0.81
   2 ?   -2.5   0.0       1.2   6.9e+03      68      82 ..     117     131 ..     102     146 .. 0.54
   3 !   14.2   1.5   7.4e-06     0.044       7      49 ..     171     215 ..     166     290 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0003
                HHHHCT-HHHHHHCEEEEEEEE-TTS-EE.EHHHHHHHHHCCHCEEEEE.EEEE..EEEEEETTEEEEE CS
     DUF4440 10 eafvagdaealaallapdavlvgpsgtvl.dkeellealeagfaagrsl.elte..eevrvlgdlAvvt 74
                +a+ +g++  la+l+a  a+++ + g+ + +++ +l  + +g+++ + + ++++  +  r+lg +A+ t
  KIR66216.1  5 SALDRGSLGGLARLCATGATWWVDTGPDRrGGDPQLSPHGSGRFPLHGVmRMDDklALMRRLGPTAFPT 73
                7999******************99999966999999999999999888756666666667777777655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
                 TTEEEEEEEEEEEEC CS
     DUF4440  68 gdlAvvtgrytfegr 82 
                 + +Avv++r   +++
  KIR66216.1 117 PTGAVVSVREYLDTV 131
                 334444444433332 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 7.4e-06
                 HHHHHHHCT-HHHHHHCEEEEEEEE-TTS-EE..EHHHHHHHHHC CS
     DUF4440   7 aleeafvagdaealaallapdavlvgpsgtvl..dkeellealea 49 
                 a++ a+++gd+++++ l++ da+++++ g+ +  +++     + a
  KIR66216.1 171 AMWPALARGDLDTFGGLFTGDATWWTDTGRDRrlGRPHRRGDIHA 215
                 7899*********************88854422355554444443 PP

>> WI12  Wound-induced protein WI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0043        26      22      63 ..      92     132 ..      81     151 .. 0.76
   2 !   16.8   0.0   9.6e-07    0.0057      20      62 ..     261     301 ..     256     318 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0043
        WI12  22 dafgstviaeGtdetrklyWvhaWtvk.dGvitqvreyfntsl 63 
                 ++ g+ v a G++ +++  +v  + v   G +  vrey +t  
  KIR66216.1  92 EVEGHGVHASGVEYANRYGFV--FDVDpTGAVVSVREYLDTVH 132
                 555666777777777776655..6788899*********9975 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 9.6e-07
        WI12  20 svdafgstviaeGtdetrklyWvhaWtvk.dGvitqvreyfnts 62 
                 +v+a+g++v+a+G+   ++  W+    v  dG i +vrey++t 
  KIR66216.1 261 AVEAVGDAVLADGARYQNRYLWIV--DVRaDG-IGEVREYCDTL 301
                 799***********9999999985..566355.89******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2519.82
//
Query:       KIR66217.1  [L=318]
Description: hypothetical protein TK50_13615 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-23   81.3   1.8    1.2e-22   80.3   1.8    1.5  1  ADH_zinc_N    Zinc-binding dehydrogenase
    3.7e-10   41.0   0.5    3.7e-10   41.0   0.5    2.1  3  ADH_zinc_N_2  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.016   14.7   1.5      0.016   14.7   1.5    1.6  2  adh_short     short chain dehydrogenase
       0.12   12.2   1.9       0.73    9.7   0.1    2.8  2  ADH_N         Alcohol dehydrogenase GroES-like domain
        8.6    5.6  13.6        3.8    6.8   7.5    2.3  2  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   1.8   3.2e-26   1.2e-22       1     128 [.     163     279 ..     163     281 .. 0.92

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 3.2e-26
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgeeefd 98 
                 gv +aav lA a+Ga+v+++++s+ k+e a  lGa ++++       +r+ el      dvv+e+vG +at+  ++++++ gG +vv+Gg ++   ++d
  KIR66217.1 163 GVATAAVGLAVAAGATVVVTSRSPAKRERALALGAAVALDV-----GDRVPELA-----DVVVETVG-PATFAHSVRSTRAGGVIVVCGGtSGFTAQLD 250
                 8999***********************************99.....67888888.....********.**********************7444444** PP

                 HHHHHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  99 lrnlllkeksilGsllgslreefkealdll 128
                 l +l+++e+++ Gs++gs  +ef++++d +
  KIR66217.1 251 LPRLFAREITVHGSTMGS-LDEFRALVDYV 279
                 ******************.7****999865 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.1   1.1e+04      47      53 ..      89      95 ..      62     130 .. 0.54
   2 ?   -0.9   0.1      0.92   3.3e+03      31      53 ..     162     183 ..     139     202 .. 0.46
   3 !   41.0   0.5     1e-13   3.7e-10      20     131 ..     208     313 ..     175     315 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.1
                  EEEEE-- CS
  ADH_zinc_N_2 47 Grlvsig 53
                  Gr v+++
    KIR66217.1 89 GRTVTHA 95
                  3322222 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.92
                   HHHHH.HHHHHHE.EEEEEEEE-- CS
  ADH_zinc_N_2  31 ggealleaslkvl.pggGrlvsig 53 
                   gg a+  a++ +  + g+++v+ +
    KIR66217.1 162 GGVAT--AAVGLAvAAGATVVVTS 183
                   23333..22222223324444433 PP

  == domain 3  score: 41.0 bits;  conditional E-value: 1e-13
                   TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----..S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH----EEEEEEGGGH CS
  ADH_zinc_N_2  20 gegvDvvldtvggealleaslkvlpggGrlvsiggpp.lsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGklrpvvdrvfpleea 115
                   +e  Dvv++tvg +++ ++s++  + gG +v+ gg++ ++a+l  p++++++ +v+ +++ s       + +++l+++++ + +rp vd+v +l+++
    KIR66217.1 208 PELADVVVETVGPATF-AHSVRSTRAGGVIVVCGGTSgFTAQLDLPRLFAREITVHGSTMGS-----LDE-FRALVDYVDTHGIRPAVDSVVDLADV 297
                   4558********9999.*******77588877775555999999999999888888888884.....556.*************************9 PP

                   HHHHHHHHSS--SSEE CS
  ADH_zinc_N_2 116 aeAhrylesgrarGKi 131
                   +   +++ +  a+GK+
    KIR66217.1 298 RAQAARMLASTAFGKL 313
                   9999999999999998 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.5   4.5e-06     0.016       2      42 ..     154     194 ..     153     220 .. 0.88
   2 ?   -2.5   0.0      0.81   2.9e+03       2      14 ..     235     247 ..     230     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.5e-06
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevak 42 
                 vvlv Ga++G+  a +   +++Ga+vvv++rs++k e++++
  KIR66217.1 154 VVLVQGAGGGVATAAVGLAVAAGATVVVTSRSPAKRERALA 194
                 8*********************************9987765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.81
                 EEEEESTTSHHHH CS
   adh_short   2 vvlvtGassGIGr 14 
                 v++v G++sG+  
  KIR66217.1 235 VIVVCGGTSGFTA 247
                 6777788887755 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1    0.0002      0.73       1      42 [.      30      71 ..      30     120 .. 0.92
   2 ?   -2.4   0.2       1.2   4.3e+03      43      64 ..     157     178 ..     148     191 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0002
                TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEE CS
       ADH_N  1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGe 42
                pg+v ++v+a +++  D+++l+g +  ++  p ++G +++G+
  KIR66217.1 30 PGWVGVDVRAGALNMHDIWTLRGVAGRPHGGPHVIGSDAAGV 71
                5899*******************9999*************97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
                 EEEESTT-CS--TT-EEEE-SE CS
       ADH_N  43 veevgpevkklkvGdrVvvepl 64 
                 v+ +g +v + +vG  V++ ++
  KIR66217.1 157 VQGAGGGVATAAVGLAVAAGAT 178
                 4556667777666666655444 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   7.5    0.0011       3.8      22      75 ..     146     199 ..     128     218 .. 0.78
   2 ?    2.3   0.6     0.024        87      16      50 ..     220     254 ..     207     310 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0011
                  EETCB---EEEEE...STSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCEC CS
  AlaDh_PNT_C  22 gvpgvepakvlvi...GgGvaGlqAiatakglgakVtvlDvrparleqleslgakfv 75 
                  + + v p++v+ +   GgG + ++A+  a++ ga+V+v+  +pa++e+  +lga  v
   KIR66217.1 146 KAT-VGPGRVVLVqgaGGG-VATAAVGLAVAAGATVVVTSRSPAKRERALALGAA-V 199
                  444.678998765543555.5689***********************99998887.4 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.024
                  EEETTCEETCB---EEEEESTSHHHHHHHHHHHHT CS
  AlaDh_PNT_C  16 kgtlaGgvpgvepakvlviGgGvaGlqAiatakgl 50 
                    t a  v+ ++++ v+v+ gG+ G  A     +l
   KIR66217.1 220 PATFAHSVRSTRAGGVIVVCGGTSGFTAQLDLPRL 254
                  567788899999*************9996555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2596.77
//
Query:       KIR66218.1  [L=162]
Description: dehydratase [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-25   87.4   0.0    6.8e-25   87.0   0.0    1.1  1  MaoC_dehydratas  MaoC like domain
  ------ inclusion threshold ------
       0.02   15.0   0.0      0.024   14.8   0.0    1.3  1  MaoC_dehydrat_N  N-terminal half of MaoC dehydratase


Domain annotation for each model (and alignments):
>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   7.6e-29   6.8e-25       6     104 ..      19     120 ..      14     130 .. 0.94

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 7.6e-29
                      TTSEEEEEEEEEEEHHHHHHHHHHHT---GGGT-HHHHHHTTTSSSB--HHHHHHHHHHHHHHHHSTT...EGGGEEEEEEEE-S--BTTCEEE CS
  MaoC_dehydratas   6 igekvetekeitvteadialyalvsgDlnpiHvdpefAkkagfggpIahGmltlaivaklveeelgdn...vvarvgeikvrFtkpVlpgdtlk 96 
                      +g+++ +++++ vt+++i ++a v+gD+++iHvd e A+ ++fg++++hG+ltla+v  l+++ l  +   +  ++g ++vrF++p +pg +++
       KIR66218.1  19 VGQDLGASEPRVVTQEQIDRFADVTGDHQWIHVDVERARSGPFGTTVVHGFLTLALVPLLLADILEVRehsMGVNYGLDRVRFVRPLPPGVEIQ 112
                      799999*********************************************************999999999********************** PP

                      EEEEEEEE CS
  MaoC_dehydratas  97 velevvgk 104
                       +++ v  
       KIR66218.1 113 GTATLVSA 120
                      99998875 PP

>> MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.6e-06     0.024       2      49 ..      18      66 ..      17     119 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.6e-06
  MaoC_dehydrat_N  2 liGaef.epvkaevereavrefakavgetnpayldeeaaraagyrslia 49
                     l+G+ + + +  +v++e++ +fa  +g+ + +++d e ar+  +++ ++
       KIR66218.1 18 LVGQDLgASEPRVVTQEQIDRFADVTGDHQWIHVDVERARSGPFGTTVV 66
                     578888666889***************************9988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1229.41
//
Query:       KIR66219.1  [L=171]
Description: hypothetical protein TK50_13630 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-29  103.3   0.2    1.4e-29  103.2   0.2    1.0  1  Flavin_Reduct  Flavin reductase like domain


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.2   7.7e-34   1.4e-29       2     152 ..      17     163 ..      16     166 .. 0.95

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 7.7e-34
                    TTS-EE-EEEEE.EETTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBCCGHHHHHHTCS...SCCCCCCCCCCCEEECTC CS
  Flavin_Reduct   2 rrvaqpvavvttsvpptsplgatlssftslsldPplvafslrlpsstadalkeagefvinllsesqealadafsqksgprtddksifagltweesp 97 
                    ++++++v+ vt+    ++ +++t++sfts+sl Pp v+f++   ss+  +l++a + +i++ls++qe++a++f++    ++ ++  + g++w ++p
     KIR66219.1  17 GHFPTGVTAVTAVTGAGEVAALTVNSFTSVSLRPPKVLFCVTSHSSSFPVLMAADRIAIHILSQNQEDVARRFATSGL-SGAQR--LDGVSWVPGP 109
                    579*********888999999******************************************************776.89999..99******** PP

                    CCSEEETTCSEEEEEEEEEEECCTTEEEEEEEEEEEEESTTECTTBEECCCCCEE CS
  Flavin_Reduct  98 tgapallgalasleCqvvgsvelgdhelfigeVvavkvgddadeepLlywrrrya 152
                    +++p+l g +a l  +  + ++ gdh ++++ V +v+++     + L ++r+r+ 
     KIR66219.1 110 DAVPLLPGTPAILAGRRDEVITSGDHVIVLLDVDHVHLKPTGV-PALSFYRGRFV 163
                    ****************************************955.5799***9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1200.60
//
Query:       KIR66220.1  [L=508]
Description: hypothetical protein TK50_13645 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-53  181.9   9.6    2.6e-53  181.4   9.6    1.2  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.4   9.6   1.4e-57   2.6e-53       5     374 ..      89     430 ..      87     433 .. 0.84

  Alignments for each domain:
  == domain 1  score: 181.4 bits;  conditional E-value: 1.4e-57
                 SSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESSETTTTTTHCHHHHHHHGCC CS
   SBP_bac_5   5 aLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkkpnalfltllaavpasiakk 103
                 +L +s  ++ +D++t+tfk R+++ Fs+G++  A++v+ ++  + d   ++  +++     +++++ea+d +tv++++k+p+ + + ll+ v   ++  
  KIR66220.1  89 GLVTS--WTRTDATTWTFKVRPDIAFSNGEKADAAAVANTITLTRDAAASQLKSYFT----NVTAIEAPDATTVVVKTKTPQYNIPDLLTTVYLVPP-- 179
                 68899..459**********************************9999999998888....6*******************8866666666666555.. PP

                 HTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHH.HTTSSSEEESTTCCTHCHHHHHTTEEEEEEE CS
   SBP_bac_5 104 aaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaal.qsGeiddvaepppsdieqlkeakglkvlyes 201
                  +  +++ ++ ++++pvgtGPY+ +  + g+ i +++npdYw g k+  d i+f    +++a+++al qs+ +d+  ++pp+++ + k a g++v +++
  KIR66220.1 180 -KYYQEKGSEGFAAAPVGTGPYVWAGANAGRDISVKKNPDYW-GTKATNDGITFTWA-NEAAQRLALiQSKSVDISFDLPPAQASAAKSA-GVDV-VST 273
                 .34478889*********************************.*************9.7777777777*****99999999888886555.5555.466 PP

                 EEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHHHTT-BCSSTSCEETCEEEEE CS
   SBP_bac_5 202 pgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLkeaGykdgdggglrekklklt 300
                  ++     ++ ++k+pfdd+++R+A ++AiDr++ivk ++ g+a+++++ll   + + +    +     d + Ak+l  +a                ++
  KIR66220.1 274 ETAMKIIAFLDSTKAPFDDPKLREAAALAIDRDAIVKGIFDGQAVADAGLLNVKPGQQPSRSVT----ADAARAKELVGSAAPA-------------VQ 355
                 6666666666777*************************************99876666555444....499*******999766.............44 PP

                 EEEETTSHHHH.HHHHHHHHHHHHTTEEEEEEEECHHHHHHHH.HHCTTESEEEEEEECTTSTTHHHHHHHHSTTC CS
   SBP_bac_5 301 lllasgspaek.aiaeliqqqlkkiGikvevktvdwaatyler.vkdgdfdmillgwgadypdpdnflnpflsssg 374
                 +++++ + ++  ++a+++  +l+++G+kv+  ++d   t  +r   ++ + +++++  ++ + pd+f++ fl++++
  KIR66220.1 356 ISYPAAQYTNIeEVAQAVGGSLEQAGFKVTYVPLDY-GTLVKRiIGRQVPGISIFAGVPNVAVPDYFVSGFLKTKS 430
                 5555555555449*********************99.666666477788889999999999999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3866.94
//
Query:       KIR66221.1  [L=307]
Description: hypothetical protein TK50_13655 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-44  152.2  11.6    1.3e-44  152.2  11.6    1.8  3  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       0.4   7.1e+03     166     172 ..      20      26 ..       8      39 .. 0.49
   2 ?   -2.6   0.1      0.22   3.9e+03     101     118 ..      96     113 ..      91     114 .. 0.82
   3 !  152.2  11.6   7.3e-49   1.3e-44       1     184 [.     116     307 .]     116     307 .] 0.99

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.4
  BPD_transp_1 166 lllnlva 172
                   ll+ l++
    KIR66221.1  20 LLIALSL 26 
                   2222222 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.22
  BPD_transp_1 101 vvlPnalppiitglilaf 118
                    +lP +l  +++g++la+
    KIR66221.1  96 DRLPYTLQLVAAGMGLAL 113
                   579999999999999986 PP

  == domain 3  score: 152.2 bits;  conditional E-value: 7.3e-49
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.........vilsilghlilpviillllsaapyvrlirraalrslpkdlveaar 88 
                   g++lG+laa++ + ++d++ ++l  +++s+P+f+++++lv++f           ++  +hlilp+++++++ +a ++rl+r+++ ++l + ++  ar
    KIR66221.1 116 GVPLGVLAATREGTWWDRAASTLALLGQSVPVFWFGMMLVVLFavklgwlpaGQSGTPKHLILPALTMSVYPMAHIARLTRASMSEALAEPYIDSAR 212
                   89*************************************************99999999************************************** PP

  BPD_transp_1  89 alGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprvr 184
                   a+G++ +++++++++ na+ pi+t ++l+ g+ll gav++e++ swpGlg+l l+ai+ +d+++ + ++v++++++++llnlv+d+l+ ++dprvr
    KIR66221.1 213 ARGLGNRRVVWRHAFANAMMPILTIVVLQTGILLSGAVAVEYVYSWPGLGQLALQAIQFRDFPLVQ-AIVVFGALVFVLLNLVVDVLHSIVDPRVR 307
                   ******************************************************************.***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2168.39
//
Query:       KIR66222.1  [L=263]
Description: hypothetical protein TK50_13665 [Micromonospora carbonacea]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-27   94.5   0.0    1.1e-26   94.0   0.0    1.2  1  ABC_tran      ABC transporter
    1.9e-05   24.2   0.0    2.7e-05   23.7   0.0    1.2  1  SMC_N         RecF/RecN/SMC N terminal domain
    2.9e-05   24.5   0.6    5.2e-05   23.7   0.6    1.4  1  AAA_16        AAA ATPase domain
    0.00013   22.2   0.3    0.00097   19.4   0.3    2.1  1  AAA_22        AAA domain
    0.00031   20.9   0.1     0.0014   18.8   0.1    1.9  1  AAA_33        AAA domain
    0.00039   20.3   0.1       0.42   10.4   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    0.00068   19.1   0.3       0.16   11.4   0.2    2.4  2  PhoH          PhoH-like protein
     0.0037   17.7   0.0     0.0071   16.8   0.0    1.5  1  oligo_HPY     Oligopeptide/dipeptide transporter, C-terminal 
     0.0091   15.9   0.1      0.053   13.4   0.0    2.0  2  NACHT         NACHT domain
  ------ inclusion threshold ------
      0.013   14.9   0.0       0.48    9.8   0.0    2.3  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.019   14.1   0.0      0.031   13.5   0.0    1.3  1  NB-ARC        NB-ARC domain
       0.02   14.6   0.0      0.037   13.8   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
      0.022   14.6   0.1      0.043   13.7   0.1    1.5  1  MobB          Molybdopterin guanine dinucleotide synthesis pr
      0.025   14.3   0.1      0.038   13.7   0.1    1.3  1  PRK           Phosphoribulokinase / Uridine kinase family
      0.068   13.7   0.0      0.079   13.4   0.0    1.2  1  AAA_23        AAA domain
      0.086   12.7   0.0       0.16   11.8   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
      0.095   12.7   0.0        0.3   11.1   0.0    1.9  1  AAA_5         AAA domain (dynein-related subfamily)
        0.1   12.0   0.0       0.23   10.8   0.0    1.6  1  ATPase        KaiC
       0.11   12.9   0.0       0.18   12.2   0.0    1.5  1  AAA           ATPase family associated with various cellular 
       0.16   11.9   1.2       0.22   11.4   0.2    1.7  2  NTPase_1      NTPase
       0.19   11.4   0.0       0.28   10.9   0.0    1.3  1  AAA_24        AAA domain
       0.49   10.6   4.7        1.2    9.4   0.1    3.2  3  Tugs          Tethering Ubl4a to BAGS domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.0   1.3e-29   1.1e-26       1     136 [.      24     183 ..      24     184 .. 0.95

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 1.3e-29
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH.......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx.......... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren.......... 79 
                 l++v+l++++g++v++vGe+G+GK+tL++++ gll+     + G+++l g+ + +    ++ ++  + +g+++q+   +l+p ++vr++          
  KIR66222.1  24 LDDVDLEIRRGQIVGVVGESGSGKTTLARCVVGLLDRnvrvERGSVTLAGDVVVSpgvdRTDRVRGSAVGMVFQDasRSLNPLMRVRTQlaevlrrhvr 122
                 799*******************************9998999********9999989998888889999*******9999******************** PP

                 .....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                      e +++  ++l+++++ + +++v++s p++LSgG +qrva+a a++++p l+++DE+t
  KIR66222.1 123 ditraEVRRRSLEVLEQMRIAD-PARVLDSYPHQLSGGLRQRVAIALAVVTRPALVIADECT 183
                 *999888889*********999.*************************************99 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   3.4e-08   2.7e-05      25     189 ..      35     204 ..      22     232 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.4e-08
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCC.....CCC--..BTTCSSTTEEEEEEEEEETTEE....SSSSSSCEEEEEEEETTSE.EEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxx..xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxx.xxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrsekls.....dlihk..skekasvkkaeveitfdnedkk....lkiekeevsisrrvkrkge.sey 111
                 ++  +vG+ GSGK+ l   +  +L     +++r e+ s     d++ +   ++ ++v    v ++f++ +++    ++++++  ++ rr +r+ +  e+
  KIR66222.1  35 QIVGVVGESGSGKTTLARCVVGLLD----RNVRVERGSvtlagDVVVSpgVDRTDRVRGSAVGMVFQDASRSlnplMRVRTQLAEVLRRHVRDITrAEV 129
                 46789************99955555....466666654112226666688899999**********999999777666777777888877777663444 PP

                 EETT.EEE-HHHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT CS
                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 112 king.kevtkkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn 189
                 +    +  ++  +++  +  + ++++LSgG ++ va+aL      v + +l++ De   aLD +  +kv+ l+++  ++
  KIR66222.1 130 RRRSlEVLEQMRIADPARVLDSYPHQLSGGLRQRVAIALA----VVTRPALVIADECTTALDVTTQTKVVGLFRTLVDE 204
                 4333134455777777888888889********9999987....4667789******************9999887665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.6   6.4e-08   5.2e-05      22     158 ..      32     197 ..      21     212 .. 0.59

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 6.4e-08
      AAA_16  22 grpelvllsGesGvGKsslvrellralekd..........................ggiflrgkcdqlesa..............ipysalaqalaree 80 
                  r+++v ++GesG+GK++l+r++   l ++                          +             +               p+  + ++l + e
  KIR66222.1  32 RRGQIVGVVGESGSGKTTLARCVVGLLDRNvrvergsvtlagdvvvspgvdrtdrvR-------------GsavgmvfqdasrslNPLMRVRTQL-A-E 115
                 45589*******************888888999886666665444444444443331.............1334444444443344555566666.4.5 PP

      AAA_16  81 llrqlldeaesaeleawrekleealaavpelagaea..srllellkrll.allsrderplvlvlDdlqwadeaslql.laaL 158
                 +lr   ++ + ae+++ + + +e+++++++++  ++  ++l   l++ +   l+   rp +++ D+   a + + q     L
  KIR66222.1 116 VLRRHVRDITRAEVRRRSLEVLEQMRIADPARVLDSypHQLSGGLRQRVaIALAVVTRPALVIADECTTALDVTTQTkVVGL 197
                 6666666645545555555555555544444444447788888888887755555577888888887766665555545544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.3   1.2e-06   0.00097       4      38 ..      33      83 ..      30     217 .. 0.58

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.2e-06
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeeakaee................e 38
                + +i+ v+GesG+GKTtl+r ++  ld+    e+                +
  KIR66222.1 33 RGQIVGVVGESGSGKTTLARCVVGLLDRNVRVERgsvtlagdvvvspgvdR 83
                577888*****************9998765555555555444444444440 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   1.7e-06    0.0014       2      69 ..      37     127 ..      36     202 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.7e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklg........avllssdt...............lrrrlfgtdqqsktdytrvldrlyqilnelarkalsa 69 
                 v +vG +GsGK+tla+ ++  l+         v+l+ d+               +  ++f +  +s++ + rv+++l + l++ +r+  +a
  KIR66222.1  37 VGVVGESGSGKTTLARCVVGLLDrnvrvergSVTLAGDVvvspgvdrtdrvrgsAVGMVFQDASRSLNPLMRVRTQLAEVLRRHVRDITRA 127
                 5589**************8777774444445666666669999999999988885555555555566666666666555555555554444 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00051      0.42       2      25 ..      37      60 ..      36      92 .. 0.77
   2 !    8.3   0.1    0.0022       1.8     233     299 ..     152     216 ..      94     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00051
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl 25
                 +++G  gsGK++L ++  +l + 
  KIR66222.1 37 VGVVGESGSGKTTLARCVVGLLDR 60
                689***************999875 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0022
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSp 299
                  +++lS G ++  a+++a+  ++   +l++ DE  + L+   ++++++l++ l +  g+ ++++TH+ 
  KIR66222.1 152 YPHQLSGGLRQRVAIALAVVTRP---ALVIADECTTALDVTTQTKVVGLFRTLVDeLGIGLLFVTHDL 216
                 67899*****999*******999...************************6666669*********95 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.2    0.0002      0.16      16      39 ..      31      54 ..      25     137 .. 0.86
   2 ?    5.7   0.0     0.011       8.8      52      88 ..     169     206 ..     160     240 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
                HHH-SEEEEE--TTSSTTHHHHHH CS
        PhoH 16 lkkndivfaiGpaGtGKtylaval 39
                +++ +iv ++G++G+GKt la ++
  KIR66222.1 31 IRRGQIVGVVGESGSGKTTLARCV 54
                66889***************9764 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.011
                 EEEEE-S-.-TT----SS---------TTTHHHHHHHT CS
        PhoH  52 iiltrpav.eageelGflpgdleekvdpylrplydaLk 88 
                  ++trpa+  a+e  ++l+ ++++kv   +r+l+d+L 
  KIR66222.1 169 AVVTRPALvIADECTTALDVTTQTKVVGLFRTLVDELG 206
                 589***98356999*********************996 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.8e-06    0.0071       1      27 [.     235     261 ..     235     263 .] 0.96

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.8e-06
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvpr 27 
                 vE g+++ ++d+p+  YT+ Ll+++p+
  KIR66222.1 235 VEAGDAASVLDRPQQEYTRRLLAAIPS 261
                 8*************************7 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   6.5e-05     0.053       3      25 ..      37 